22 0 0 0 chr15 12 34 -85695720 + AT_rich Low_complexity Low_complexity 1 22 0 1393 304 55 21 chr15 45 317 -85695437 - MLT1H1 LTR MaLR -24 531 269 2435 51 7 0 chr15 317 612 -85695142 - AluY SINE Alu -14 297 1 1393 304 55 21 chr15 612 853 -85694901 - MLT1H1 LTR MaLR -286 269 1 773 276 22 41 chr15 874 1176 -85694578 - L2 LINE L2 -277 3036 2736 1121 138 0 6 chr15 1182 1356 -85694398 - L1PA13 LINE L1 0 6163 5991 930 109 7 0 chr15 1356 1494 -85694260 + L1P4 LINE L1 5347 5485 -676 583 110 0 0 chr15 1594 1676 -85694078 + AluSp/q SINE Alu 221 302 -11 1632 240 112 14 chr15 2805 3321 -85692433 + L1ME3 LINE L1 5489 6055 -107 1363 167 40 0 chr15 3321 3543 -85692211 + AluJo SINE Alu 1 231 -81 265 158 0 0 chr15 3543 3581 -85692173 - Alu SINE Alu -257 43 6 2174 117 3 3 chr15 3655 3962 -85691792 - AluSp SINE Alu -6 307 1 1432 152 13 0 chr15 4185 4409 -85691345 + AluJb SINE Alu 1 227 -85 2085 93 0 0 chr15 4416 4684 -85691070 - AluSx SINE Alu -44 268 1 1695 135 0 75 chr15 4688 5007 -85690747 - AluJo SINE Alu -17 295 1 384 268 82 89 chr15 5505 5774 -85689980 - L1M2 LINE L1 -5442 1407 1141 324 261 101 138 chr15 9617 10267 -85685487 - L1M2 LINE L1 -5399 1450 451 2484 59 0 7 chr15 10649 10955 -85684799 - AluY SINE Alu -7 304 1 291 85 6 0 chr15 11508 11557 -85684197 - MLT2C1 LTR ERVL -4 410 349 804 252 25 3 chr15 12089 12324 -85683430 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 12324 12456 -85683298 + GA-rich Low_complexity Low_complexity 4 139 0 628 184 101 77 chr15 12512 12624 -85683130 + L1MC4 LINE L1 7593 7714 -328 2365 57 0 41 chr15 12624 12938 -85682816 - AluY SINE Alu -10 301 1 628 184 101 77 chr15 12938 13032 -85682722 + L1MC4 LINE L1 7714 7804 -238 186 143 0 0 chr15 13074 13109 -85682645 + (TA)n Simple_repeat Simple_repeat 1 35 0 1031 181 26 71 chr15 13144 13370 -85682384 - MER20 DNA MER1_type 0 219 4 800 306 39 11 chr15 13411 13770 -85681984 + L1MEc LINE L1 1601 1969 -4427 1439 195 66 10 chr15 13805 14107 -85681647 - L1MC1 LINE L1 0 6333 6015 822 287 10 10 chr15 14448 14748 -85681006 + L1MEc LINE L1 2209 2508 -3707 1336 262 51 8 chr15 14839 15346 -85680408 + L1MEc LINE L1 2506 3034 -3181 * 3056 116 57 116 chr15 15326 15455 -85680299 + L1MA5A LINE L1 5658 5793 -504 1797 128 79 0 chr15 15455 15721 -85680033 + AluSx SINE Alu 1 287 -25 3056 116 57 116 chr15 15721 16271 -85679483 + L1MA5A LINE L1 5793 6297 0 280 288 221 0 chr15 16386 16685 -85679069 + L1MEc LINE L1 3164 3528 -2687 301 214 14 0 chr15 16699 16769 -85678985 - L1 LINE L1 -2743 3403 3333 719 215 11 6 chr15 16775 16952 -85678802 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 20360 20382 -85675372 + GC_rich Low_complexity Low_complexity 1 22 0 1741 221 30 24 chr15 20738 21169 -85674585 + L1 LINE L1 3062 3498 -2648 2210 71 0 39 chr15 21169 21477 -85674277 + AluY SINE Alu 1 296 -15 1741 221 30 24 chr15 21477 21552 -85674202 + L1 LINE L1 3498 3571 -2575 1135 170 21 21 chr15 21567 21761 -85673993 - AluJo SINE Alu -115 197 4 662 44 11 0 chr15 21773 21863 -85673891 + (TA)n Simple_repeat Simple_repeat 2 92 0 2142 128 3 0 chr15 21864 22161 -85673593 - AluSx SINE Alu -14 298 1 2244 110 3 0 chr15 22696 22996 -85672758 - AluY SINE Alu -10 301 1 1717 74 4 81 chr15 23247 23518 -85672236 - AluY SINE Alu -2 309 60 364 143 0 0 chr15 24143 24199 -85671555 + AluJb SINE Alu 59 114 -188 811 205 13 0 chr15 24214 24370 -85671384 - AluSp SINE Alu -24 289 132 1703 172 17 7 chr15 24374 24671 -85671083 + LTR15 LTR ERV1 188 487 -6 810 189 18 79 chr15 24737 24856 -85670898 + AluJb SINE Alu 2 102 -210 1710 173 0 0 chr15 24856 25156 -85670598 - AluSp SINE Alu -13 300 1 810 189 18 79 chr15 25156 25264 -85670490 + AluJb SINE Alu 102 215 -97 254 88 0 0 chr15 25267 25301 -85670453 + AluJb SINE Alu 84 117 -185 734 142 0 25 chr15 25328 25448 -85670306 - AluSp SINE Alu -194 119 3 628 170 18 9 chr15 25479 25591 -85670163 + AluJb SINE Alu 2 114 -198 908 161 11 0 chr15 25593 25767 -85669987 - AluSp SINE Alu -16 297 122 235 143 18 0 chr15 26223 26279 -85669475 + G-rich Low_complexity Low_complexity 3 59 0 25 31 0 0 chr15 26748 26780 -85668974 + AT_rich Low_complexity Low_complexity 1 32 0 2435 76 0 0 chr15 26812 27115 -85668639 - AluY SINE Alu -8 303 1 273 262 24 12 chr15 27467 27551 -85668203 + L2 LINE L2 3228 3312 -1 255 345 0 0 chr15 27655 27739 -85668015 + L2 LINE L2 3230 3313 0 1693 167 0 44 chr15 28112 28430 -85667324 - AluJb SINE Alu 0 312 9 26 30 0 0 chr15 28949 28982 -85666772 + AT_rich Low_complexity Low_complexity 1 33 0 2281 57 0 0 chr15 29124 29436 -85666318 + AluY SINE Alu 1 312 0 297 0 0 0 chr15 30405 30438 -85665316 + (TG)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr15 31647 31676 -85664078 + (T)n Simple_repeat Simple_repeat 1 29 0 348 313 32 47 chr15 32115 32393 -85663361 + L1ME4a LINE L1 5708 5981 -140 707 89 0 20 chr15 32508 32609 -85663145 - AluSc SINE Alu -9 300 202 997 320 120 35 chr15 32814 33322 -85662432 + L2 LINE L2 2180 2643 -670 2205 118 0 0 chr15 33322 33626 -85662128 - AluSx SINE Alu -8 304 1 997 320 120 35 chr15 33626 34158 -85661596 + L2 LINE L2 2643 3313 0 22 35 0 0 chr15 34416 34445 -85661309 + AT_rich Low_complexity Low_complexity 1 29 0 2475 58 6 13 chr15 34688 34999 -85660755 + AluSp SINE Alu 1 309 -4 299 232 52 45 chr15 35550 35705 -85660049 - Charlie7 DNA MER1_type -36 2576 2421 24 67 0 0 chr15 36371 36416 -85659338 + AT_rich Low_complexity Low_complexity 1 45 0 210 133 40 46 chr15 37673 37846 -85657908 + (TA)n Simple_repeat Simple_repeat 1 172 0 405 141 33 56 chr15 37857 38134 -85657620 + (CATATA)n Simple_repeat Simple_repeat 1 270 0 443 136 32 55 chr15 38136 38609 -85657145 + (TA)n Simple_repeat Simple_repeat 1 461 0 184 70 70 18 chr15 38882 38939 -85656815 + (TA)n Simple_repeat Simple_repeat 1 60 0 231 318 73 27 chr15 39193 39303 -85656451 - L2 LINE L2 0 3272 3158 1130 158 11 5 chr15 39828 40018 -85655736 + L1PB3 LINE L1 5959 6149 -5 2392 39 4 0 chr15 40021 40339 -85655415 - AluY SINE Alu 0 319 1 189 0 0 0 chr15 40490 40511 -85655243 + (A)n Simple_repeat Simple_repeat 1 21 0 237 213 0 0 chr15 40511 40558 -85655196 + L2 LINE L2 3263 3309 -4 23 0 0 0 chr15 41076 41099 -85654655 + AT_rich Low_complexity Low_complexity 1 23 0 712 273 42 118 chr15 41545 41945 -85653809 + LTR16A LTR ERVL 68 437 -13 852 134 0 24 chr15 42160 42287 -85653467 + FLAM_C SINE Alu 1 124 -9 1948 112 0 0 chr15 43299 43557 -85652197 + AluSx SINE Alu 45 302 -10 237 366 30 22 chr15 43752 43886 -85651868 - L2 LINE L2 -2516 798 664 322 294 12 19 chr15 44274 44434 -85651320 - AluY SINE Alu -142 159 1 218 122 0 41 chr15 45690 45739 -85650015 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1006 207 110 42 chr15 46017 46399 -85649355 + LTR37A LTR ERV1 19 426 0 24 0 0 0 chr15 47098 47122 -85648632 + AT_rich Low_complexity Low_complexity 1 24 0 2112 96 0 60 chr15 47384 47698 -85648056 - AluY SINE Alu -14 297 3 342 219 36 51 chr15 48374 48511 -85647243 - HAL1b LINE L1 -22 1326 1192 2315 82 0 3 chr15 48519 48825 -85646929 + AluY SINE Alu 1 305 -6 31 26 0 0 chr15 48843 48881 -85646873 + AT_rich Low_complexity Low_complexity 1 38 0 2331 57 3 17 chr15 49028 49328 -85646426 - AluY SINE Alu -15 296 1 269 211 0 0 chr15 49428 49480 -85646274 - FLAM SINE Alu -2 131 80 933 195 32 52 chr15 49503 49754 -85646000 - MLT1A1 LTR MaLR 0 365 120 1808 197 37 8 chr15 50014 50369 -85645385 - MLT1A1 LTR MaLR 0 365 1 1555 65 0 10 chr15 50391 50590 -85645164 - AluY SINE Alu -4 307 111 834 85 25 8 chr15 50831 50949 -85644805 + AluY SINE Alu 1 120 -191 537 262 94 20 chr15 51087 51289 -85644465 - MIR SINE MIR -30 232 16 3262 97 15 0 chr15 51530 51995 -85643759 - L1PA10 LINE L1 -1 6167 5696 1217 77 0 0 chr15 52000 52170 -85643584 + L1PA10 LINE L1 5517 5686 -482 2495 60 0 0 chr15 53619 53918 -85641836 - AluY SINE Alu -12 299 1 186 236 246 60 chr15 54097 54296 -85641458 - L2 LINE L2 -2739 575 340 250 300 225 0 chr15 54448 54568 -85641186 - MIR SINE MIR 0 262 116 245 208 21 0 chr15 54922 55018 -85640736 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4778 126 22 19 chr15 55628 56405 -85639349 - MER4E LTR ERV1 0 779 1 24 0 0 0 chr15 56646 56670 -85639084 + AT_rich Low_complexity Low_complexity 1 24 0 2505 75 0 0 chr15 56696 57004 -85638750 + AluY SINE Alu 1 308 -3 1535 97 20 16 chr15 58957 59204 -85636550 - THE1C LTR MaLR -127 248 1 1598 154 68 7 chr15 60077 60356 -85635398 + AluSx SINE Alu 1 296 -16 2108 137 3 0 chr15 60361 60668 -85635086 + AluSg SINE Alu 1 308 -2 41 98 0 0 chr15 60685 60817 -85634937 + AT_rich Low_complexity Low_complexity 1 132 0 24 77 0 0 chr15 60865 60917 -85634837 + AT_rich Low_complexity Low_complexity 1 52 0 2018 93 31 10 chr15 61074 61365 -85634389 - AluY SINE Alu -14 297 1 2048 97 24 7 chr15 61368 61656 -85634098 - AluSc SINE Alu -16 293 1 185 378 18 18 chr15 62099 62210 -85633544 - L2 LINE L2 -251 3062 2952 2439 40 0 13 chr15 62306 62608 -85633146 - AluY SINE Alu -13 298 1 1005 244 122 29 chr15 62621 63039 -85632715 - MLT1E2 LTR MaLR -169 457 1 241 283 25 82 chr15 63101 63260 -85632494 - L2 LINE L2 -991 2323 2174 237 132 0 0 chr15 63464 63502 -85632252 + (CACG)n Simple_repeat Simple_repeat 1 38 0 271 211 13 0 chr15 63503 63579 -85632175 + MLT1D LTR MaLR 429 505 0 3374 202 61 11 chr15 63617 64422 -85631332 + L1MB7 LINE L1 4735 5636 -548 2034 118 0 0 chr15 64422 64701 -85631053 + AluSx SINE Alu 34 312 0 3374 202 61 11 chr15 64701 65259 -85630495 + L1MB7 LINE L1 5636 6165 -19 24 0 0 0 chr15 65297 65321 -85630433 + AT_rich Low_complexity Low_complexity 1 24 0 348 272 105 17 chr15 65505 65744 -85630010 + L1M4 LINE L1 4132 4391 -1755 209 200 0 0 chr15 66342 66382 -85629372 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 382 171 68 0 chr15 67583 67671 -85628083 + MSTC LTR MaLR 1 94 -334 241 300 50 40 chr15 67817 67917 -85627837 - L2 LINE L2 -3 3269 3169 2273 74 7 7 chr15 68980 69276 -85626478 + AluY SINE Alu 1 296 -15 2272 72 10 7 chr15 69289 69582 -85626172 + AluY SINE Alu 2 295 -16 449 218 142 58 chr15 69583 69808 -85625946 - L1MC4a LINE L1 -1520 6288 6045 1687 208 42 17 chr15 69953 70309 -85625445 - MLT1A1 LTR MaLR 0 365 1 2675 105 0 5 chr15 70603 70994 -85624760 - MER1A DNA MER1_type 0 529 141 36 62 0 0 chr15 72696 72760 -85622994 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr15 73216 73244 -85622510 + AT_rich Low_complexity Low_complexity 1 28 0 929 155 42 10 chr15 74193 74386 -85621368 + LTR15 LTR ERV1 288 486 -7 246 108 0 0 chr15 74417 74454 -85621300 - Alu SINE Alu -265 37 1 563 188 8 8 chr15 74482 74599 -85621155 + AluJo/FLAM SINE Alu 1 117 -185 1657 160 3 3 chr15 74602 74909 -85620845 - AluSp SINE Alu 0 313 7 785 224 13 48 chr15 74943 75057 -85620697 + AluJb SINE Alu 1 105 -207 1562 156 6 50 chr15 75057 75377 -85620377 - AluSp SINE Alu -7 306 1 785 224 13 48 chr15 75377 75490 -85620264 + AluJb SINE Alu 105 220 -92 1730 146 6 43 chr15 75532 75854 -85619900 - AluSp SINE Alu -3 310 1 1325 147 6 107 chr15 75882 76001 -85619753 + AluJb SINE Alu 1 130 -182 1624 173 0 29 chr15 76001 76313 -85619441 - AluSp SINE Alu -10 303 1 1325 147 6 107 chr15 76313 76540 -85619214 + AluJb SINE Alu 130 312 0 288 0 0 0 chr15 76696 76728 -85619026 + (A)n Simple_repeat Simple_repeat 1 32 0 391 217 64 96 chr15 77176 77397 -85618357 + L1MC5 LINE L1 7609 7819 -142 2228 128 0 0 chr15 77397 77703 -85618051 + AluSq SINE Alu 1 306 -7 391 217 64 96 chr15 77703 77795 -85617959 + L1MC5 LINE L1 7819 7912 -49 256 310 117 12 chr15 77846 78017 -85617737 - L1MEd LINE L1 -5927 192 4 340 288 136 45 chr15 78476 78674 -85617080 + L1ME4a LINE L1 5621 5836 -285 1740 150 7 7 chr15 78986 79266 -85616488 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr15 79268 79295 -85616459 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1431 208 0 4 chr15 79335 79580 -85616174 + AluJo SINE Alu 1 244 -68 38 61 0 0 chr15 80322 80388 -85615366 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr15 80844 80872 -85614882 + AT_rich Low_complexity Low_complexity 1 28 0 1788 60 20 8 chr15 81153 81402 -85614352 - MER11B LTR ERVK -984 252 1 1654 111 91 4 chr15 81402 81645 -85614109 + AluSx SINE Alu 49 312 0 268 250 307 21 chr15 81992 82132 -85613622 + L2 LINE L2 3114 3293 -20 26 0 0 0 chr15 82766 82792 -85612962 + AT_rich Low_complexity Low_complexity 1 26 0 765 180 24 24 chr15 82792 82959 -85612795 - L1MC3 LINE L1 -23 7762 7596 323 223 154 23 chr15 84181 84311 -85611443 + MER103 DNA DNA 8 154 -12 250 276 17 52 chr15 84550 84666 -85611088 + MER5A DNA MER1_type 56 167 -22 2646 48 0 0 chr15 84988 85299 -85610455 - AluY SINE Alu 0 311 1 186 342 179 5 chr15 85983 86173 -85609581 - L2 LINE L2 -1268 2046 1824 2202 238 46 26 chr15 87789 88529 -85607225 + L1ME3A LINE L1 5407 6161 -9 270 0 0 0 chr15 88731 88761 -85606993 + (TTCCC)n Simple_repeat Simple_repeat 5 34 0 2315 71 0 3 chr15 89397 89708 -85606046 - AluY SINE Alu 0 310 1 2506 31 41 0 chr15 90451 90741 -85605013 - AluY SINE Alu -9 302 1 556 184 14 14 chr15 91906 92047 -85603707 - L1MA10 LINE L1 -2 6332 6192 1000 188 10 5 chr15 92182 92374 -85603380 - AluJb SINE Alu -4 308 116 2522 223 76 14 chr15 92379 93736 -85602018 - L1ME1 LINE L1 -244 5922 4493 246 270 40 8 chr15 93862 93988 -85601766 + L1ME LINE L1 1243 1372 -5158 416 277 134 57 chr15 93996 94332 -85601422 + L1ME LINE L1 1332 1650 -4892 249 296 172 0 chr15 94332 94501 -85601253 + L1M2 LINE L1 2374 2571 -4278 1913 36 0 9 chr15 94783 95036 -85600718 + AluY SINE Alu 59 309 0 316 282 32 97 chr15 95150 95210 -85600544 + L1ME LINE L1 2159 2221 -4319 2235 115 0 0 chr15 95210 95506 -85600248 + AluSx SINE Alu 1 296 -16 316 282 32 97 chr15 95506 95661 -85600093 + L1ME LINE L1 2221 2360 -4180 21 0 0 0 chr15 95715 95736 -85600018 + AT_rich Low_complexity Low_complexity 1 21 0 1243 121 0 0 chr15 95737 95910 -85599844 + AluSg/x SINE Alu 121 293 -17 1576 191 48 18 chr15 95910 96302 -85599452 + L1MB4 LINE L1 5777 6180 0 497 217 95 59 chr15 97094 97315 -85598439 + L1MC5 LINE L1 7680 7908 -53 1934 100 12 0 chr15 97908 98167 -85597587 + AluSq SINE Alu 1 262 -51 1324 211 219 20 chr15 98173 98684 -85597070 + MER90 LTR ERV1 2 614 0 1975 162 3 0 chr15 99302 99598 -85596156 + AluJb SINE Alu 1 297 -15 390 318 35 0 chr15 99601 99774 -85595980 + L1MC4 LINE L1 6763 6941 -1101 279 250 73 0 chr15 99977 100073 -85595681 + L1MC5 LINE L1 7124 7226 -735 306 291 109 11 chr15 100207 100382 -85595372 + L1MC5 LINE L1 7305 7496 -465 1002 178 201 22 chr15 100398 100555 -85595199 + MLT1B LTR MaLR 15 143 -231 2164 108 7 0 chr15 100555 100852 -85594902 + AluSx SINE Alu 5 303 -9 1002 178 201 22 chr15 100852 101010 -85594744 + MLT1B LTR MaLR 143 374 0 368 254 48 60 chr15 101036 101304 -85594450 + L1MC5 LINE L1 7513 7777 -184 249 311 259 11 chr15 101569 101855 -85593899 + L2 LINE L2 2952 3308 -5 343 239 62 44 chr15 103898 104011 -85591743 + L1ME LINE L1 2 116 -5954 345 273 55 55 chr15 104696 104776 -85590978 + L1ME LINE L1 715 794 -5276 2221 78 10 0 chr15 104776 105071 -85590683 + AluSg SINE Alu 1 298 -12 345 273 55 55 chr15 105071 105320 -85590434 + L1ME LINE L1 793 1044 -5026 481 296 65 88 chr15 105323 105674 -85590080 + L1ME LINE L1 1065 1421 -4673 2333 87 0 0 chr15 107015 107324 -85588430 + AluY SINE Alu 1 309 -2 1131 133 0 0 chr15 107324 107490 -85588264 + AluSc SINE Alu 132 297 -12 2069 111 3 3 chr15 107600 107898 -85587856 - AluSx SINE Alu -14 298 1 935 178 40 0 chr15 108223 108397 -85587357 - MER58A DNA MER1_type 0 224 44 912 190 194 7 chr15 109661 109797 -85585957 - MER2 DNA MER2_type 0 344 235 2427 75 0 0 chr15 109797 110105 -85585649 - AluY SINE Alu -3 308 1 912 190 194 7 chr15 110105 110257 -85585497 - MER2 DNA MER2_type -109 235 2 1086 96 5 75 chr15 110403 110591 -85585163 - AluSg/x SINE Alu -3 309 135 2209 94 0 10 chr15 110591 110899 -85584855 - AluY SINE Alu -6 305 1 353 242 10 0 chr15 111131 111230 -85584524 - MER5A DNA MER1_type -80 98 10 301 264 179 9 chr15 113264 113370 -85582384 + L1ME4a LINE L1 5995 6118 -3 2113 89 7 13 chr15 113393 113697 -85582057 + AluSx SINE Alu 1 302 -10 1997 117 0 19 chr15 115332 115640 -85580114 - AluSg SINE Alu -8 302 1 695 167 0 0 chr15 116470 116584 -85579170 - FLAM_A SINE Alu -9 133 20 21 36 0 0 chr15 116770 116798 -85578956 + AT_rich Low_complexity Low_complexity 1 28 0 311 323 6 0 chr15 117068 117235 -85578519 + (CA)n Simple_repeat Simple_repeat 1 168 0 250 307 17 22 chr15 117550 117729 -85578025 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 864 236 145 51 chr15 118063 118449 -85577305 + MLT1C LTR MaLR 3 425 -42 1504 166 80 43 chr15 118449 118861 -85576893 + MLT1C LTR MaLR 1 467 0 276 75 132 0 chr15 119238 119291 -85576463 - L1MC1 LINE L1 -9 6324 6265 626 211 55 0 chr15 119291 119419 -85576335 - AluJb SINE Alu -4 308 174 328 264 107 21 chr15 122926 123066 -85572688 + L1ME LINE L1 5631 5782 -339 2224 186 107 0 chr15 123068 123574 -85572180 + MER68 LTR ERV1 1 560 -2 1797 272 52 47 chr15 123582 124547 -85571207 + HERVL68 LTR ERVL 60 1117 -1920 30 59 0 0 chr15 124547 124598 -85571156 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr15 124598 124639 -85571115 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 139 0 0 chr15 124642 124685 -85571069 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1544 148 0 44 chr15 124700 124971 -85570783 - AluJb SINE Alu -31 281 23 1390 213 67 13 chr15 125104 125554 -85570200 + L1MB5 LINE L1 2613 3086 -3060 912 196 5 5 chr15 125558 125747 -85570007 + AluJb SINE Alu 118 306 -6 1513 221 95 12 chr15 125752 125887 -85569867 + L1MB5 LINE L1 3112 3234 -2912 2311 87 0 6 chr15 125887 126198 -85569556 + AluSc SINE Alu 1 309 0 1513 221 95 12 chr15 126198 126569 -85569185 + L1MB5 LINE L1 3234 3660 -2486 3588 191 67 67 chr15 126574 127464 -85568290 + L1MB5 LINE L1 4457 5357 -817 2227 109 0 0 chr15 127464 127776 -85567978 + AluSx SINE Alu 1 312 0 3588 191 67 67 chr15 127776 128595 -85567159 + L1MB5 LINE L1 5357 6174 0 255 61 0 0 chr15 128602 128635 -85567119 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 131011 131033 -85564721 + AT_rich Low_complexity Low_complexity 1 22 0 1060 256 53 12 chr15 131203 131523 -85564231 - MER58B DNA MER1_type -5 336 4 2048 227 72 39 chr15 131677 132263 -85563491 + MER77 LTR ERV1 1 605 0 2232 78 3 29 chr15 132732 133040 -85562714 + AluSc SINE Alu 1 300 -9 2211 79 0 0 chr15 136773 137052 -85558702 - AluSq SINE Alu -26 287 9 1873 159 0 0 chr15 137067 137357 -85558397 - AluJb SINE Alu -22 290 1 750 244 45 42 chr15 139447 139783 -85555971 + L1MB3 LINE L1 2713 3049 -3097 387 208 32 97 chr15 139833 139987 -85555767 + L1MC5 LINE L1 6957 7100 -861 477 281 93 56 chr15 140155 140604 -85555150 + L1MC5 LINE L1 7317 7782 -179 2251 68 0 0 chr15 140610 140926 -85554828 + AluY SINE Alu 5 320 0 4576 179 60 8 chr15 141133 142009 -85553745 + L1MB3 LINE L1 4754 5728 -455 2136 101 3 7 chr15 142009 142317 -85553437 + AluSc SINE Alu 1 307 -2 4576 179 60 8 chr15 142317 142766 -85552988 + L1MB3 LINE L1 5728 6152 -31 241 302 17 17 chr15 142745 142861 -85552893 + L1ME2 LINE L1 3556 3671 -2475 * 1050 264 53 24 chr15 143118 143535 -85552219 + L1ME2 LINE L1 3723 4151 -1995 1096 272 101 34 chr15 143562 144379 -85551375 + L1ME2 LINE L1 4830 5667 -497 1342 155 102 11 chr15 144379 144643 -85551111 + AluJb SINE Alu 4 291 -21 1096 272 101 34 chr15 144643 144857 -85550897 + L1ME2 LINE L1 5667 5865 -299 213 271 0 0 chr15 145673 145732 -85550022 - L3b LINE CR1 -170 1413 1355 2007 128 0 0 chr15 145734 146031 -85549723 + AluSx SINE Alu 1 297 -15 369 0 0 0 chr15 146034 146075 -85549679 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 208 0 42 chr15 146083 146155 -85549599 - L1MCa LINE L1 -4362 2064 1996 797 171 0 8 chr15 147635 147764 -85547990 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr15 147766 147787 -85547967 + AT_rich Low_complexity Low_complexity 1 21 0 2322 81 7 3 chr15 147888 148196 -85547558 - AluSq SINE Alu -4 309 1 1958 101 0 34 chr15 150126 150423 -85545331 - AluSc SINE Alu -22 287 1 23 33 0 0 chr15 150919 150949 -85544805 + AT_rich Low_complexity Low_complexity 1 30 0 2044 153 0 0 chr15 151629 151923 -85543831 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 151930 151987 -85543767 - Charlie5 DNA MER1_type -57 2567 2508 2251 106 3 0 chr15 151987 152280 -85543474 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 152280 152589 -85543165 - Charlie5 DNA MER1_type -116 2508 2222 280 246 32 56 chr15 152572 152698 -85543056 - Charlie5 DNA MER1_type -2489 123 1 * 2165 121 0 13 chr15 154148 154453 -85541301 + AluSx SINE Alu 1 301 -11 1984 138 7 0 chr15 154470 154774 -85540980 + AluSp SINE Alu 1 306 -7 1026 248 158 38 chr15 155303 155524 -85540230 + L1ME2 LINE L1 5487 5680 -484 1683 174 10 3 chr15 155524 155822 -85539932 + AluJb SINE Alu 3 302 -10 1026 248 158 38 chr15 155822 156105 -85539649 + L1ME2 LINE L1 5680 6052 -112 1963 74 0 4 chr15 157121 157363 -85538391 - AluY SINE Alu -70 241 1 280 188 94 0 chr15 158148 158212 -85537542 + L1M4 LINE L1 2617 2686 -3460 369 85 0 0 chr15 158214 158261 -85537493 - AluY SINE Alu -6 296 250 1439 94 0 21 chr15 158261 158452 -85537302 - AluY SINE Alu -124 187 1 2803 237 55 51 chr15 158452 158656 -85537098 + L1M4 LINE L1 2679 2881 -3265 1974 128 3 10 chr15 158656 158945 -85536809 + AluSp SINE Alu 1 287 -26 2803 237 55 51 chr15 158945 159554 -85536200 + L1M4 LINE L1 2881 3486 -2660 2298 107 3 3 chr15 159554 159862 -85535892 - AluSq SINE Alu -4 309 2 2803 237 55 51 chr15 159862 160141 -85535613 + L1M4 LINE L1 3486 3780 -2366 2080 116 0 47 chr15 160141 160459 -85535295 + AluSx SINE Alu 1 303 -9 2803 237 55 51 chr15 160459 160527 -85535227 + L1M4 LINE L1 3780 3846 -2300 922 130 0 0 chr15 160531 160662 -85535092 + FLAM_C SINE Alu 6 136 -7 1591 252 29 25 chr15 160682 161209 -85534545 + L1M4 LINE L1 3839 4367 -1779 225 128 26 0 chr15 162496 162535 -85533219 + MER58B DNA MER1_type 302 341 0 1921 151 43 0 chr15 164218 164517 -85531237 + AluSx SINE Alu 1 312 0 708 234 53 6 chr15 164628 164799 -85530955 - MER58A DNA MER1_type -1 223 45 2245 103 3 0 chr15 166702 166993 -85528761 + AluSq SINE Alu 1 292 -21 1053 252 45 13 chr15 167048 167358 -85528396 + L1ME1 LINE L1 5803 6122 -44 1590 111 0 4 chr15 170422 170647 -85525107 - AluSp SINE Alu -5 308 85 270 52 7 0 chr15 170671 170750 -85525004 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 28 48 0 0 chr15 170754 170796 -85524958 + AT_rich Low_complexity Low_complexity 1 42 0 2188 93 0 23 chr15 171849 172150 -85523604 + AluY SINE Alu 1 294 -17 21 36 0 0 chr15 174228 174256 -85521498 + AT_rich Low_complexity Low_complexity 1 28 0 239 300 90 0 chr15 175230 175330 -85520424 - MIR SINE MIR -60 148 40 819 93 0 0 chr15 176144 176279 -85519475 + AluY SINE Alu 175 309 0 1708 114 4 0 chr15 176447 176684 -85519070 + AluSg/x SINE Alu 75 312 0 1827 120 11 19 chr15 176968 177234 -85518520 + AluSx SINE Alu 49 312 0 344 172 81 46 chr15 177235 177322 -85518432 + L1MD2 LINE L1 5801 5890 -469 1292 175 18 13 chr15 177322 177550 -85518204 + AluJo SINE Alu 60 288 -24 25 31 0 0 chr15 177550 177582 -85518172 + AT_rich Low_complexity Low_complexity 1 32 0 1029 210 174 3 chr15 177614 177942 -85517812 + L1MD2 LINE L1 5960 6343 -16 1409 178 63 72 chr15 178289 178443 -85517311 + MER2 DNA MER2_type 1 155 -190 792 164 0 15 chr15 178443 178577 -85517177 + FLAM_C SINE Alu 2 133 0 1607 160 82 3 chr15 178583 178865 -85516889 + AluJb SINE Alu 1 304 -8 1409 178 63 72 chr15 178865 179051 -85516703 + MER2 DNA MER2_type 160 345 0 206 246 15 0 chr15 179073 179138 -85516616 + A-rich Low_complexity Low_complexity 4 69 0 2048 97 48 7 chr15 179469 179758 -85515996 - AluSp SINE Alu -12 301 1 1401 153 142 47 chr15 179993 180084 -85515670 + AluJo SINE Alu 1 82 -230 324 0 0 0 chr15 180084 180120 -85515634 + (CA)n Simple_repeat Simple_repeat 1 36 0 1401 153 142 47 chr15 180120 180303 -85515451 + AluJo SINE Alu 82 301 -11 492 264 34 7 chr15 180862 181010 -85514744 - MIR SINE MIR -30 232 81 2226 104 0 17 chr15 181091 181390 -85514364 + AluSx SINE Alu 1 294 -18 5260 211 69 83 chr15 182551 183120 -85512634 + L1MDa LINE L1 831 1406 -5134 1948 124 4 0 chr15 183120 183395 -85512359 + AluSg SINE Alu 1 276 -34 5260 211 69 83 chr15 183395 184333 -85511421 + L1MDa LINE L1 1406 2355 -4185 1667 158 83 9 chr15 184333 184669 -85511085 - MER46B DNA MER2_type 0 236 1 5260 211 69 83 chr15 184669 185107 -85510647 + L1MDa LINE L1 2355 2798 -3742 2232 108 26 7 chr15 185107 185414 -85510340 + AluSq SINE Alu 1 313 0 5260 211 69 83 chr15 185414 187115 -85508639 + L1MDa LINE L1 2798 4422 -2118 245 311 126 0 chr15 188033 188152 -85507602 - MIR SINE MIR 0 262 129 2264 93 13 3 chr15 188187 188489 -85507265 - AluY SINE Alu -6 305 1 1842 99 15 33 chr15 188744 189016 -85506738 + AluSp SINE Alu 34 300 -13 1935 132 0 35 chr15 189018 189328 -85506426 + AluSq SINE Alu 1 299 -14 314 325 38 24 chr15 189361 189573 -85506181 + L1MEc LINE L1 1850 2064 -4332 833 242 148 25 chr15 189582 189975 -85505779 + L1MEc LINE L1 2215 2655 -3560 397 167 0 0 chr15 190769 190829 -85504925 - AluS SINE Alu -9 292 233 1251 121 0 0 chr15 190831 190996 -85504758 - AluSq SINE Alu -148 165 1 2080 194 84 20 chr15 190996 191554 -85504200 + L1MEc LINE L1 2752 3345 -2870 246 309 31 0 chr15 191597 191694 -85504060 - MIR SINE MIR -22 240 141 742 209 26 13 chr15 191702 191855 -85503899 - FRAM SINE Alu -21 155 1 1441 83 0 0 chr15 192220 192401 -85503353 + AluY SINE Alu 131 311 0 2396 101 0 3 chr15 192411 192718 -85503036 + AluSq SINE Alu 1 306 -7 1415 173 43 18 chr15 192721 192998 -85502756 + L1M3 LINE L1 5325 5608 -572 606 237 0 0 chr15 192999 193117 -85502637 + FLAM_C SINE Alu 2 119 -24 694 108 0 0 chr15 193127 193229 -85502525 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 193229 193261 -85502493 + AT_rich Low_complexity Low_complexity 1 32 0 2617 59 0 0 chr15 193676 193979 -85501775 + AluY SINE Alu 1 303 -8 443 241 73 7 chr15 194552 194689 -85501065 - MER21B LTR ERV1 -57 806 661 577 220 16 44 chr15 194693 194875 -85500879 + L1MDa LINE L1 1543 1719 -4821 2073 164 117 5 chr15 194920 195347 -85500407 + LTR53 LTR ERVL 5 479 -40 813 222 57 4 chr15 195420 195650 -85500104 + L1ME2 LINE L1 5323 5564 -2478 895 248 17 111 chr15 195802 195908 -85499846 + MER58B DNA MER1_type 3 117 -2303 1710 79 8 75 chr15 195908 196160 -85499594 - AluSx SINE Alu -77 235 1 895 248 17 111 chr15 196160 196425 -85499329 + MER58B DNA MER1_type 117 339 -2 2039 149 0 0 chr15 196657 196959 -85498795 + AluSg1 SINE Alu 1 302 -7 798 233 118 28 chr15 198028 198315 -85497439 + L1ME2 LINE L1 5851 6163 -1 273 29 0 0 chr15 198468 198502 -85497252 + (TG)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr15 198515 198543 -85497211 + AT_rich Low_complexity Low_complexity 1 28 0 2266 114 0 3 chr15 198606 198914 -85496840 - AluSx SINE Alu -2 310 4 2367 75 0 16 chr15 198977 199283 -85496471 + AluY SINE Alu 2 302 -9 276 105 0 0 chr15 199288 199326 -85496428 - tRNA-Phe-TTC tRNA tRNA -38 38 1 390 300 144 34 chr15 200150 200232 -85495522 + L1MC4a LINE L1 5856 5928 -1880 2171 115 3 3 chr15 200232 200545 -85495209 + AluSq SINE Alu 1 313 0 390 300 144 34 chr15 200545 200815 -85494939 + L1MC4a LINE L1 5928 6247 -1561 25 51 0 0 chr15 200846 200885 -85494869 + AT_rich Low_complexity Low_complexity 1 39 0 2170 125 3 6 chr15 201004 201317 -85494437 + AluSx SINE Alu 1 312 0 471 270 138 6 chr15 201404 201563 -85494191 + L1MD3 LINE L1 6663 6842 -1153 2187 128 0 0 chr15 201596 201893 -85493861 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 201927 201949 -85493805 + AT_rich Low_complexity Low_complexity 1 22 0 429 70 0 0 chr15 202189 202246 -85493508 + (TA)n Simple_repeat Simple_repeat 1 57 0 2170 119 3 0 chr15 202267 202562 -85493192 - AluSc SINE Alu -13 296 1 6175 146 16 40 chr15 202562 204348 -85491406 - L1MA3 LINE L1 -246 6059 4231 2372 101 0 0 chr15 204348 204656 -85491098 + AluSx SINE Alu 1 308 -4 6175 146 16 40 chr15 204656 204819 -85490935 - L1MA3 LINE L1 -2074 4231 4162 2173 133 13 0 chr15 204819 205127 -85490627 - AluSx SINE Alu 0 312 1 6175 146 16 40 chr15 205127 205166 -85490588 - L1MA3 LINE L1 -2143 4162 4124 5622 15 0 8 chr15 205173 205781 -85489973 - L1PA2 LINE L1 0 6155 5553 5225 22 2 0 chr15 205781 206561 -85489193 + L1PA2 LINE L1 4781 5561 -594 * 6471 169 47 23 chr15 206557 207294 -85488460 - L1MA3 LINE L1 -2019 4127 3344 2146 135 0 3 chr15 207294 207598 -85488156 - AluSx SINE Alu -9 303 1 6471 169 47 23 chr15 207598 208193 -85487561 - L1MA3 LINE L1 -2802 3344 2764 * 7910 151 17 7 chr15 208185 209508 -85486246 - L1 LINE L1 -1158 4988 3652 1878 217 35 27 chr15 209508 209987 -85485767 - L1MA3 LINE L1 -3384 2762 2280 1129 202 129 14 chr15 210018 210305 -85485449 + MLT1E1 LTR MaLR 326 645 -9 781 200 21 14 chr15 210486 210626 -85485128 + AluJo SINE Alu 1 141 -171 1744 160 17 3 chr15 210628 210915 -85484839 + AluJb SINE Alu 1 291 -21 51 0 0 0 chr15 210915 210966 -85484788 + AT_rich Low_complexity Low_complexity 1 51 0 2218 120 0 0 chr15 211259 211568 -85484186 + AluY SINE Alu 1 309 -2 1981 140 3 3 chr15 211647 211947 -85483807 + AluJb SINE Alu 1 300 -12 223 336 43 51 chr15 211970 212223 -85483531 - L2 LINE L2 -900 2414 2164 1436 202 26 0 chr15 212816 213088 -85482666 + AluJo SINE Alu 1 279 -33 188 86 29 0 chr15 213090 213125 -85482629 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 203 308 58 29 chr15 213427 213531 -85482223 - MIR SINE MIR -136 126 20 2142 43 98 7 chr15 213657 213933 -85481821 - AluY SINE Alu -10 301 1 251 157 20 0 chr15 214918 214969 -85480785 + MER41A LTR ERV1 402 453 -101 437 202 43 40 chr15 214984 215041 -85480713 + MER58B DNA MER1_type 70 125 -2295 2226 96 3 20 chr15 215041 215344 -85480410 + AluSg SINE Alu 1 298 -12 437 202 43 40 chr15 215344 215518 -85480236 + MER58B DNA MER1_type 125 340 -1 969 94 23 0 chr15 215980 216108 -85479646 + AluSg SINE Alu 1 131 -179 1230 150 0 0 chr15 216526 216713 -85479041 + AluSg SINE Alu 119 305 -5 799 180 0 0 chr15 216823 216951 -85478803 + FLAM_C SINE Alu 1 128 -5 2112 80 62 0 chr15 217247 217523 -85478231 - AluSc SINE Alu -16 293 1 2186 107 7 0 chr15 217563 217854 -85477900 - AluSx SINE Alu -19 293 1 903 251 58 86 chr15 217962 218392 -85477362 + L1MD1 LINE L1 5825 6242 0 2059 107 17 3 chr15 218810 219100 -85476654 + AluSx SINE Alu 1 294 -18 2187 95 20 16 chr15 219768 220072 -85475682 + AluSx SINE Alu 1 305 -7 2235 92 10 0 chr15 220586 220878 -85474876 - AluSq SINE Alu -18 295 1 21 36 0 0 chr15 221203 221231 -85474523 + AT_rich Low_complexity Low_complexity 1 28 0 191 188 21 0 chr15 222053 222101 -85473653 + GA-rich Low_complexity Low_complexity 1 49 0 384 268 82 89 chr15 222410 222679 -85473075 + L1M4c LINE L1 1141 1407 -5442 1695 135 0 75 chr15 223177 223496 -85472258 + AluJo SINE Alu 1 295 -17 2085 93 0 0 chr15 223500 223768 -85471986 + AluSx SINE Alu 1 268 -44 1432 152 13 0 chr15 223775 223999 -85471755 - AluJb SINE Alu -85 227 1 2121 120 3 3 chr15 224222 224523 -85471231 + AluSp SINE Alu 1 301 -12 465 257 37 39 chr15 224525 224709 -85471045 + L1M4c LINE L1 2887 3074 -3774 1892 162 3 0 chr15 224709 225011 -85470743 + AluJb SINE Alu 1 303 -9 465 257 37 39 chr15 225011 225037 -85470717 + L1M4c LINE L1 3074 3099 -3749 2116 105 10 0 chr15 225039 225335 -85470419 - AluSq SINE Alu -9 304 6 2072 138 0 0 chr15 225364 225660 -85470094 + AluSx SINE Alu 1 296 -16 2303 109 3 0 chr15 225820 226132 -85469622 - AluSp SINE Alu 0 313 1 2307 100 0 3 chr15 226136 226436 -85469318 - AluSx SINE Alu -13 299 1 2114 133 0 0 chr15 226555 226849 -85468905 - AluJb SINE Alu -18 294 1 24 0 0 0 chr15 226920 226944 -85468810 + AT_rich Low_complexity Low_complexity 1 24 0 2333 74 0 10 chr15 226951 227248 -85468506 + AluY SINE Alu 5 298 -13 22 0 0 0 chr15 227441 227463 -85468291 + AT_rich Low_complexity Low_complexity 1 22 0 2388 75 0 31 chr15 227606 227926 -85467828 - AluY SINE Alu -1 310 1 186 284 0 0 chr15 228089 228170 -85467584 + T-rich Low_complexity Low_complexity 5 85 0 2425 155 52 2 chr15 228419 228825 -85466929 + MSTB LTR MaLR 1 426 0 517 100 0 67 chr15 229483 229573 -85466181 - L1PA8 LINE L1 -6 6166 6083 841 235 6 6 chr15 229734 229913 -85465841 - MLT1A1 LTR MaLR -15 350 172 2342 110 33 0 chr15 230014 230350 -85465404 + L1PA13 LINE L1 5628 5974 -189 631 266 39 34 chr15 230352 230585 -85465169 - L2 LINE L2 -570 2744 2511 49 71 0 0 chr15 230735 230833 -85464921 + AT_rich Low_complexity Low_complexity 1 98 0 2714 109 8 16 chr15 231824 232191 -85463563 - THE1B LTR MaLR 0 364 1 6882 124 25 43 chr15 232191 233300 -85462454 - THE1B-int LTR MaLR 0 1580 490 2272 68 23 16 chr15 233300 233608 -85462146 - AluY SINE Alu -1 310 1 6882 124 25 43 chr15 233608 233641 -85462113 - THE1B-int LTR MaLR -1090 490 458 2278 78 0 0 chr15 234101 234405 -85461349 - AluY SINE Alu 0 304 1 1100 92 7 7 chr15 234532 234684 -85461070 + AluY SINE Alu 1 152 -159 225 94 0 0 chr15 234787 234819 -85460935 + (A)n Simple_repeat Simple_repeat 1 32 0 982 253 25 8 chr15 234819 235056 -85460698 - MLT1H1 LTR MaLR -24 531 291 2447 47 7 0 chr15 235091 235388 -85460366 - AluY SINE Alu -12 299 1 1981 140 3 3 chr15 236103 236403 -85459351 - AluJb SINE Alu -12 300 1 2458 68 0 3 chr15 236483 236791 -85458963 - AluY SINE Alu -4 307 1 186 284 0 0 chr15 236954 237035 -85458719 + T-rich Low_complexity Low_complexity 5 85 0 2362 160 52 5 chr15 237284 237691 -85458063 + MSTB LTR MaLR 1 426 0 488 111 0 67 chr15 238348 238438 -85457316 - L1PA8 LINE L1 -6 6166 6083 1675 226 9 6 chr15 238599 238948 -85456806 - MLT1A1 LTR MaLR -15 350 1 347 322 106 35 chr15 238975 239230 -85456524 - L1 LINE L1 -2273 3873 3601 24 0 0 0 chr15 239308 239332 -85456422 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 239737 239758 -85455996 + AT_rich Low_complexity Low_complexity 1 21 0 740 102 0 10 chr15 239971 240113 -85455641 - AluSp/q SINE Alu 0 313 192 327 275 88 0 chr15 240451 240542 -85455212 + L2 LINE L2 3154 3252 -20 595 264 97 33 chr15 240573 240842 -85454912 + MLT1E2 LTR MaLR 1 285 -341 2628 45 0 0 chr15 241162 241473 -85454281 - AluY SINE Alu 0 311 1 502 265 66 24 chr15 241477 241643 -85454111 - MLT1H1 LTR MaLR -345 245 73 1459 122 77 12 chr15 242339 242586 -85453168 - L1PA10 LINE L1 -2 6166 5904 505 232 0 11 chr15 242630 242811 -85452943 + (TA)n Simple_repeat Simple_repeat 2 180 0 229 260 0 41 chr15 242834 242957 -85452797 + A-rich Low_complexity Low_complexity 1 118 0 398 188 10 0 chr15 242957 243053 -85452701 + (TA)n Simple_repeat Simple_repeat 2 98 0 198 345 0 0 chr15 243568 243623 -85452131 - MIR SINE MIR -133 75 21 1980 139 7 13 chr15 243848 244151 -85451603 - AluJb SINE Alu -11 301 1 241 192 208 48 chr15 244346 244471 -85451283 - MER103 DNA DNA -20 146 2 951 174 64 100 chr15 244688 244999 -85450755 + AluY SINE Alu 1 300 -1 578 290 44 30 chr15 245002 245077 -85450677 + L1M4 LINE L1 4378 4451 -1695 1477 195 31 92 chr15 245077 245466 -85450288 + MLT1A1 LTR MaLR 1 365 0 578 290 44 30 chr15 245466 245687 -85450067 + L1M4 LINE L1 4451 4678 -1468 772 174 14 28 chr15 245700 245844 -85449910 + FLAM_C SINE Alu 2 143 0 1565 159 67 14 chr15 245891 246174 -85449580 - AluJb SINE Alu -14 298 1 198 0 0 0 chr15 246182 246204 -85449550 + (T)n Simple_repeat Simple_repeat 1 22 0 281 238 16 0 chr15 246405 246468 -85449286 - MIR SINE MIR -112 150 87 1585 174 20 40 chr15 246696 246994 -85448760 - AluJo SINE Alu -20 292 1 255 61 0 0 chr15 247005 247037 -85448717 + (TG)n Simple_repeat Simple_repeat 1 65 0 255 61 0 0 chr15 247037 247070 -85448684 + (TG)n Simple_repeat Simple_repeat 2 34 0 908 219 26 59 chr15 247255 247561 -85448193 - L1MA9 LINE L1 -30 6282 5987 294 164 0 0 chr15 247734 247789 -85447965 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 * 414 139 0 0 chr15 247782 247854 -85447900 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2151 131 3 3 chr15 248329 248641 -85447113 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 248731 248787 -85446967 + MER3 DNA MER1_type 1 56 -153 836 201 53 0 chr15 248798 248967 -85446787 + AluJb SINE Alu 133 310 -2 319 285 106 68 chr15 248967 249174 -85446580 + L1MEd LINE L1 931 1145 -4974 2138 110 0 0 chr15 249211 249520 -85446234 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 249829 249883 -85445871 + (CA)n Simple_repeat Simple_repeat 2 54 0 2620 49 0 0 chr15 251494 251798 -85443956 + AluY SINE Alu 1 304 -7 270 81 0 0 chr15 252047 252084 -85443670 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr15 252083 252106 -85443648 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 6074 70 5 4 chr15 252324 253082 -85442672 + L1PA7 LINE L1 5383 6141 -13 3877 63 2 4 chr15 252590 253083 -85442671 + L1PA7 LINE L1 5651 6173 0 240 0 32 0 chr15 253083 253114 -85442640 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 801 274 55 30 chr15 253194 253522 -85442232 + LTR16B LTR ERVL 129 464 0 308 265 15 98 chr15 253526 253658 -85442096 - MIR SINE MIR -95 167 47 635 158 0 0 chr15 253837 253938 -85441816 + AluJb SINE Alu 136 236 -76 266 178 0 0 chr15 253980 254025 -85441729 + Alu SINE Alu 248 292 -9 631 266 179 19 chr15 254555 254818 -85440936 + L1ME3A LINE L1 5430 5734 -428 522 278 130 40 chr15 254820 255173 -85440581 + L1ME3A LINE L1 5782 6166 -4 2295 68 0 0 chr15 255581 255877 -85439877 - AluY SINE Alu -15 296 1 1488 246 81 27 chr15 258487 258930 -85436824 - MLT1C LTR MaLR 0 467 1 310 160 0 0 chr15 259780 259830 -85435924 - MIR3 SINE MIR -21 187 138 2279 93 0 0 chr15 259855 260157 -85435597 + AluY SINE Alu 1 302 -9 2190 67 0 0 chr15 260917 261221 -85434533 + AluY SINE Alu 1 304 0 758 252 141 27 chr15 262236 262569 -85433185 + L1ME3 LINE L1 5685 6055 -107 1559 183 31 0 chr15 262569 262858 -85432896 + AluJb SINE Alu 1 298 -14 2073 226 56 56 chr15 262858 263477 -85432277 - L1M4 LINE L1 -2651 3495 2874 1898 122 0 10 chr15 263477 263772 -85431982 - AluSq SINE Alu -21 292 1 2073 226 56 56 chr15 263772 263973 -85431781 - L1M4 LINE L1 -3271 2875 2675 302 202 53 26 chr15 263973 264065 -85431689 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 1967 83 0 18 chr15 264065 264341 -85431413 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 264341 264362 -85431392 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2221 74 0 48 chr15 264362 264674 -85431080 + AluY SINE Alu 1 297 -14 325 229 133 0 chr15 264676 264781 -85430973 - L1M4 LINE L1 -3460 2686 2568 1340 101 106 0 chr15 265751 265959 -85429795 + MER30 DNA MER1_type 1 230 0 1544 149 88 0 chr15 266942 267204 -85428550 - AluJb SINE Alu -19 293 9 943 279 126 26 chr15 268216 268504 -85427250 - L1ME2 LINE L1 -112 6052 5794 1683 163 13 3 chr15 268504 268811 -85426943 - AluJb SINE Alu 0 312 3 943 279 126 26 chr15 268811 269023 -85426731 - L1ME2 LINE L1 -370 5794 5502 2066 133 3 0 chr15 269559 269867 -85425887 - AluSp SINE Alu -4 309 1 2088 128 0 0 chr15 269890 270196 -85425558 - AluSx SINE Alu -6 306 1 282 92 0 138 chr15 270958 271045 -85424709 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 271706 271820 -85423934 + MER3 DNA MER1_type 48 163 -46 * 1117 232 3 10 chr15 271815 272125 -85423629 + MER3 DNA MER1_type 2222 2529 0 1866 118 3 70 chr15 272125 272440 -85423314 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 272461 272511 -85423243 + T-rich Low_complexity Low_complexity 5 56 0 1855 148 0 3 chr15 272545 272828 -85422926 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 273513 273543 -85422211 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 274035 274086 -85421668 - Alu SINE Alu -250 52 2 2082 125 3 0 chr15 274306 274610 -85421144 - AluSx SINE Alu -7 305 1 383 271 57 62 chr15 275672 275864 -85419890 + MIR SINE MIR 2 192 -70 294 314 139 7 chr15 276806 276943 -85418811 + MIR3 SINE MIR 31 185 -23 229 164 15 75 chr15 276950 277017 -85418737 + MER39 LTR ERV1 68 130 -577 270 180 60 0 chr15 277030 277080 -85418674 + L2 LINE L2 3217 3269 -3 516 229 141 40 chr15 278680 278890 -85416864 + MIR SINE MIR 16 252 -10 222 216 39 0 chr15 279865 279916 -85415838 + MIR SINE MIR 95 147 -61 261 83 0 0 chr15 280050 280086 -85415668 + (T)n Simple_repeat Simple_repeat 1 36 0 190 241 22 0 chr15 280415 280461 -85415293 + MIR SINE MIR 103 150 -58 1735 130 0 86 chr15 281003 281327 -85414427 + AluSx SINE Alu 2 297 -15 371 257 175 6 chr15 281340 281516 -85414238 + MIR SINE MIR 45 256 -6 943 161 0 0 chr15 282271 282426 -85413328 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 287356 287381 -85408373 + AT_rich Low_complexity Low_complexity 1 25 0 1434 191 0 0 chr15 287951 288197 -85407557 - AluJo SINE Alu -66 246 1 1842 149 10 0 chr15 288240 288541 -85407213 - AluSx SINE Alu -8 304 1 314 216 77 115 chr15 289730 289820 -85405934 - L1MC5 LINE L1 -47 7914 7822 212 77 26 0 chr15 289820 289859 -85405895 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2061 110 0 0 chr15 289863 290145 -85405609 - AluSq SINE Alu -31 282 1 314 216 77 115 chr15 290145 290415 -85405339 - L1MC5 LINE L1 -142 7819 7563 185 250 143 0 chr15 290680 290736 -85405018 + MIR SINE MIR 106 169 -93 1308 172 12 86 chr15 290991 291205 -85404549 - AluJb SINE Alu 0 302 119 1371 163 42 0 chr15 291205 291325 -85404429 + AluSp SINE Alu 1 114 -199 396 0 0 0 chr15 291325 291369 -85404385 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1371 163 42 0 chr15 291369 291531 -85404223 + AluSp SINE Alu 114 295 -18 1308 172 12 86 chr15 291531 291642 -85404112 - AluJb SINE Alu -183 119 1 1567 141 10 61 chr15 291669 291982 -85403772 + AluSp SINE Alu 1 297 -16 517 205 8 8 chr15 291993 292110 -85403644 - FLAM_C SINE Alu -16 117 1 844 85 15 0 chr15 292139 292269 -85403485 + AluSp SINE Alu 2 133 -180 1470 169 19 19 chr15 292275 292588 -85403166 + AluSp SINE Alu 1 313 0 332 167 15 0 chr15 292594 292660 -85403094 - AluJb SINE Alu -185 117 51 672 168 0 8 chr15 292691 292816 -85402938 + AluSp SINE Alu 7 130 -183 1121 113 0 59 chr15 293345 293548 -85402206 + AluSg/x SINE Alu 119 309 -1 1449 175 3 20 chr15 293560 293857 -85401897 + AluSp SINE Alu 7 298 -15 252 33 0 0 chr15 293868 293898 -85401856 - AluJb SINE Alu -185 117 88 738 220 13 48 chr15 293900 294013 -85401741 - AluJo SINE Alu -92 220 117 1634 141 0 50 chr15 294013 294332 -85401422 + AluSp SINE Alu 1 303 -10 738 220 13 48 chr15 294332 294445 -85401309 - AluJo SINE Alu -195 117 2 1843 186 49 13 chr15 294449 294836 -85400918 - LTR15 LTR ERV1 -92 401 1 233 269 60 0 chr15 295454 295521 -85400233 + L2 LINE L2 2204 2274 -1040 851 318 165 14 chr15 295697 296319 -85399435 + L2 LINE L2 2353 3068 -245 2206 74 3 7 chr15 297049 297348 -85398406 + AluY SINE Alu 1 298 -13 262 221 130 0 chr15 297365 297442 -85398312 + L1M4 LINE L1 4750 4836 -1310 669 293 25 37 chr15 297939 298260 -85397494 - L1MC4 LINE L1 -1 8041 7725 717 186 103 0 chr15 298490 298646 -85397108 - MER5A DNA MER1_type -2 187 16 2007 117 3 0 chr15 298837 299183 -85396571 + AluSx SINE Alu 1 347 0 352 248 106 33 chr15 299754 300101 -85395653 - L1P2 LINE L1 -589 5565 5174 1326 186 37 15 chr15 300210 300479 -85395275 - AluJo SINE Alu -37 275 1 790 151 68 14 chr15 301224 301370 -85394384 - MER5A DNA MER1_type -33 156 3 438 53 0 0 chr15 301756 301813 -85393941 + (TG)n Simple_repeat Simple_repeat 2 58 0 1892 132 3 10 chr15 301814 302102 -85393652 - AluSx SINE Alu -26 286 1 222 250 0 0 chr15 302626 302714 -85393040 + C-rich Low_complexity Low_complexity 2 89 0 411 301 66 0 chr15 304653 304789 -85390965 + MIR SINE MIR 48 192 -70 279 254 105 26 chr15 304926 305040 -85390714 + L2 LINE L2 3188 3310 -3 508 238 192 21 chr15 306641 306834 -85388920 + MIR SINE MIR 23 248 -14 2156 138 3 0 chr15 306973 307285 -85388469 + AluSp SINE Alu 1 313 0 226 317 195 0 chr15 307632 307755 -85387999 + MIR3 SINE MIR 53 199 -9 190 340 113 0 chr15 308097 308203 -85387551 + MER5A DNA MER1_type 24 141 -48 2375 68 0 0 chr15 308239 308556 -85387198 - AluY SINE Alu 0 317 1 523 292 0 35 chr15 308745 309239 -85386515 + GA-rich Low_complexity Low_complexity 1 476 0 350 250 150 56 chr15 309424 309993 -85385761 - L1M4 LINE L1 -3311 2835 2196 2107 102 20 23 chr15 309993 310298 -85385456 - AluSg SINE Alu 0 310 7 350 250 150 56 chr15 310298 310375 -85385379 - L1M4 LINE L1 -3950 2196 2128 1411 86 10 10 chr15 310664 310862 -85384892 + AluSg/x SINE Alu 115 312 0 767 233 87 15 chr15 310903 310993 -85384761 - AluJo SINE Alu -90 222 140 1933 125 0 20 chr15 310993 311290 -85384464 + AluSq SINE Alu 17 307 -6 767 233 87 15 chr15 311290 311405 -85384349 - AluJo SINE Alu -172 140 2 906 106 8 0 chr15 311434 311566 -85384188 + AluSp SINE Alu 1 133 -180 969 86 0 14 chr15 311709 311848 -85383906 + AluY SINE Alu 175 311 0 323 296 108 85 chr15 311974 312018 -85383736 + L1MDa LINE L1 2160 2202 -4338 2186 133 0 0 chr15 312018 312326 -85383428 + AluSx SINE Alu 1 308 -4 323 296 108 85 chr15 312326 312541 -85383213 + L1MDa LINE L1 2202 2425 -4115 1219 143 0 0 chr15 312555 312730 -85383024 + AluSg/x SINE Alu 121 295 -17 1638 191 48 18 chr15 312730 313122 -85382632 + L1MB4 LINE L1 5777 6180 0 582 212 90 59 chr15 313914 314136 -85381618 + L1MC5 LINE L1 7680 7908 -53 1886 109 4 0 chr15 314732 314989 -85380765 + AluSg SINE Alu 1 258 -52 1513 200 225 25 chr15 315000 315511 -85380243 + MER90 LTR ERV1 2 614 0 1978 169 3 3 chr15 316137 316438 -85379316 + AluJb SINE Alu 3 303 -9 274 313 23 11 chr15 316482 316627 -85379127 + L1MC3 LINE L1 6746 6873 -912 382 235 61 17 chr15 316810 316925 -85378829 + L1MC5 LINE L1 7107 7226 -735 356 286 109 11 chr15 317059 317234 -85378520 + L1MC5 LINE L1 7305 7496 -465 996 189 55 103 chr15 317241 317411 -85378343 + MLT1B LTR MaLR 4 181 -215 2343 103 7 0 chr15 317411 317713 -85378041 + AluSp SINE Alu 5 308 -5 996 189 55 103 chr15 317713 317798 -85377956 + MLT1B LTR MaLR 181 269 -127 2536 82 0 3 chr15 317798 318104 -85377650 + AluY SINE Alu 1 305 -6 996 189 55 103 chr15 318104 318262 -85377492 + MLT1B LTR MaLR 269 396 0 358 254 49 62 chr15 318267 318555 -85377199 + L1MC5 LINE L1 7494 7777 -184 204 274 333 10 chr15 319004 319106 -85376648 + L2 LINE L2 3133 3267 -5 350 274 18 0 chr15 321150 321263 -85374491 + L1ME LINE L1 348 462 -5954 226 323 51 44 chr15 321767 322026 -85373728 + L1ME LINE L1 877 1142 -5274 2456 84 7 0 chr15 322026 322334 -85373420 + AluSg SINE Alu 1 310 0 226 323 51 44 chr15 322334 322548 -85373206 + L1ME LINE L1 1142 1353 -5063 531 321 71 42 chr15 322569 322948 -85372806 + L1ME LINE L1 1228 1753 -4673 1798 128 33 56 chr15 324518 324822 -85370932 - AluSg SINE Alu -13 297 1 880 178 40 0 chr15 325147 325321 -85370433 - MER58A DNA MER1_type 0 224 44 249 124 169 11 chr15 326369 326458 -85369296 - L1ME4a LINE L1 -1 6120 6018 987 197 170 3 chr15 326580 326721 -85369033 - MER2 DNA MER2_type 0 344 228 2605 74 0 0 chr15 326721 327032 -85368722 - AluY SINE Alu 0 311 1 987 197 170 3 chr15 327032 327184 -85368570 - MER2 DNA MER2_type -116 228 2 942 138 0 80 chr15 327325 327513 -85368241 - AluSg/x SINE Alu -6 304 132 2401 88 0 0 chr15 327513 327810 -85367944 - AluY SINE Alu -12 299 3 350 258 10 0 chr15 328044 328143 -85367611 - MER5A DNA MER1_type -80 98 10 320 217 217 19 chr15 330179 330285 -85365469 + L1ME4a LINE L1 5995 6121 0 2272 86 7 13 chr15 330308 330612 -85365142 + AluSx SINE Alu 1 302 -10 2261 112 0 13 chr15 332182 332494 -85363260 - AluSg SINE Alu -2 308 1 809 141 0 0 chr15 333323 333444 -85362310 - FLAM_A SINE Alu -2 140 20 347 316 6 0 chr15 333921 334092 -85361662 + (CA)n Simple_repeat Simple_repeat 1 172 0 789 239 128 51 chr15 334921 335310 -85360444 + MLT1C LTR MaLR 3 421 -46 1414 175 80 43 chr15 335311 335723 -85360031 + MLT1C LTR MaLR 1 467 0 321 257 121 36 chr15 338772 338912 -85356842 + L1ME LINE L1 5631 5782 -339 2386 176 109 0 chr15 338914 339419 -85356335 + MER68 LTR ERV1 1 560 -2 1731 283 47 44 chr15 339427 340394 -85355360 + HERVL68 LTR ERVL 60 1117 -1920 210 183 56 0 chr15 340400 340471 -85355283 + (TA)n Simple_repeat Simple_repeat 2 76 0 198 128 0 0 chr15 340472 340511 -85355243 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1654 148 0 44 chr15 340526 340797 -85354957 - AluJb SINE Alu -31 281 23 1358 232 56 13 chr15 340930 341392 -85354362 + L1MB5 LINE L1 2613 3094 -3052 1024 199 0 5 chr15 341392 341588 -85354166 + AluJb SINE Alu 118 312 0 1479 220 71 21 chr15 341593 341732 -85354022 + L1MB5 LINE L1 3112 3243 -2903 2270 115 0 13 chr15 341732 342045 -85353709 + AluSc SINE Alu 1 309 0 1479 220 71 21 chr15 342045 342286 -85353468 + L1MB5 LINE L1 3243 3527 -2619 2456 73 0 0 chr15 342286 342586 -85353168 + AluY SINE Alu 1 300 -11 1479 220 71 21 chr15 342586 342727 -85353027 + L1MB5 LINE L1 3527 3660 -2486 3592 196 62 59 chr15 342732 343625 -85352129 + L1MB5 LINE L1 4457 5361 -813 2394 106 0 0 chr15 343625 343936 -85351818 + AluSx SINE Alu 1 311 -1 3592 196 62 59 chr15 343936 344752 -85351002 + L1MB5 LINE L1 5361 6174 0 22 0 0 0 chr15 347182 347204 -85348550 + AT_rich Low_complexity Low_complexity 1 22 0 961 254 53 22 chr15 347374 347697 -85348057 - MER58B DNA MER1_type -5 336 4 2135 219 75 39 chr15 347851 348435 -85347319 + MER77 LTR ERV1 1 605 0 2400 85 3 0 chr15 348898 349192 -85346562 + AluSc SINE Alu 1 295 -14 286 239 119 15 chr15 351053 351187 -85344567 + MIR SINE MIR 21 168 -94 403 287 167 7 chr15 351218 351368 -85344386 + MER5A DNA MER1_type 1 174 -15 404 264 64 0 chr15 352213 352338 -85343416 + MIR3 SINE MIR 42 174 -34 274 354 28 21 chr15 353553 353697 -85342057 + L2 LINE L2 2250 2394 -920 309 304 59 59 chr15 354545 354749 -85341005 - MLT1L LTR MaLR -407 208 5 466 244 47 17 chr15 355899 356071 -85339683 + L1ME2 LINE L1 5986 6162 -2 1828 142 49 14 chr15 356091 356379 -85339375 + AluSx SINE Alu 1 298 -14 1980 95 106 0 chr15 357007 357271 -85338483 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 357284 357311 -85338443 + AT_rich Low_complexity Low_complexity 1 27 0 247 367 61 0 chr15 360638 360736 -85335018 + L2 LINE L2 3168 3271 -1 2347 92 7 0 chr15 361172 361465 -85334289 - AluSq SINE Alu -18 295 1 2001 163 0 0 chr15 361474 361763 -85333991 - AluJb SINE Alu -23 289 1 300 257 64 36 chr15 363696 363836 -85331918 + L1M4 LINE L1 2475 2618 -3528 530 216 25 133 chr15 363868 364229 -85331525 + L1M4 LINE L1 2728 3049 -3097 339 214 32 97 chr15 364283 364437 -85331317 + L1MC5 LINE L1 6957 7100 -861 461 297 46 55 chr15 364605 365043 -85330711 + L1MC5 LINE L1 7317 7750 -211 261 57 0 0 chr15 367535 367570 -85328184 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 971 169 0 18 chr15 368695 368861 -85326893 - 7SLRNA srpRNA srpRNA -63 257 95 251 254 197 8 chr15 369567 369689 -85326065 - MIR SINE MIR -70 192 48 1984 141 0 33 chr15 369706 370012 -85325742 - AluSx SINE Alu -15 297 2 181 250 231 0 chr15 371447 371499 -85324255 - MIR SINE MIR -111 151 88 228 216 39 0 chr15 372598 372649 -85323105 - MIR SINE MIR -61 147 95 181 250 231 0 chr15 372986 373038 -85322716 - MIR SINE MIR -111 151 88 307 218 40 89 chr15 373794 373864 -85321890 - L1MC4a LINE L1 -1806 6002 5939 282 56 0 0 chr15 373864 373900 -85321854 + (CA)n Simple_repeat Simple_repeat 2 37 0 307 218 40 89 chr15 373900 373953 -85321801 - L1MC4a LINE L1 -1869 5939 5885 182 284 102 11 chr15 373983 374071 -85321683 - MIR3 SINE MIR -106 102 7 327 278 70 17 chr15 375229 375344 -85320410 - L2 LINE L2 -5 3308 3188 295 336 131 0 chr15 375364 375501 -85320253 - MIR3 SINE MIR -23 185 31 180 241 133 48 chr15 376046 376129 -85319625 - L2 LINE L2 -490 2824 2735 355 269 62 46 chr15 376479 376589 -85319165 - MIR SINE MIR -115 147 33 2309 97 7 3 chr15 376589 376887 -85318867 - AluY SINE Alu -12 299 1 355 269 62 46 chr15 376887 376906 -85318848 - MIR SINE MIR -229 33 16 211 259 0 19 chr15 379198 379252 -85316502 + (TG)n Simple_repeat Simple_repeat 2 54 0 2064 125 7 0 chr15 379571 379851 -85315903 + AluY SINE Alu 1 282 -29 33 0 0 0 chr15 379866 379899 -85315855 + AT_rich Low_complexity Low_complexity 1 33 0 589 294 230 38 chr15 379914 380330 -85315424 + L1M4 LINE L1 2908 3243 -2903 2500 59 7 13 chr15 380330 380635 -85315119 - AluY SINE Alu -8 303 1 589 294 230 38 chr15 380635 380766 -85314988 + L1M4 LINE L1 3243 3348 -2798 981 203 37 28 chr15 380766 380983 -85314771 - MER20 DNA MER1_type 0 219 1 589 294 230 38 chr15 380983 381144 -85314610 + L1M4 LINE L1 3348 3753 -2393 468 306 81 78 chr15 381367 381775 -85313979 + HAL1 LINE L1 43 451 -2056 1986 143 19 26 chr15 381938 382246 -85313508 - AluJo SINE Alu -2 310 5 2349 117 0 0 chr15 382315 382623 -85313131 + AluSp SINE Alu 1 308 -5 618 253 111 15 chr15 382641 382839 -85312915 + HAL1 LINE L1 854 1070 -1437 432 254 112 87 chr15 382857 383381 -85312373 + MLT1H1 LTR MaLR 19 555 0 863 249 127 31 chr15 383382 383895 -85311859 + HAL1 LINE L1 1069 1630 -877 254 224 0 0 chr15 383925 383974 -85311780 - MIR SINE MIR -30 232 184 351 0 0 0 chr15 383986 384025 -85311729 + (CA)n Simple_repeat Simple_repeat 2 40 0 318 148 0 0 chr15 385272 385326 -85310428 + (A)n Simple_repeat Simple_repeat 1 54 0 2334 67 37 3 chr15 385330 385627 -85310127 + AluY SINE Alu 5 311 0 1284 140 189 53 chr15 386427 386499 -85309255 - MER47A DNA MER2_type -1957 366 305 2177 108 3 7 chr15 386499 386787 -85308967 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr15 386791 386814 -85308940 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1284 140 189 53 chr15 386814 387058 -85308696 - MER47A DNA MER2_type -2020 303 1 315 275 18 37 chr15 387520 387629 -85308125 - MER5C DNA MER1_type -200 124 18 436 194 21 0 chr15 387675 387768 -85307986 + MER103 DNA DNA 51 145 -21 2454 78 0 0 chr15 388366 388660 -85307094 + AluY SINE Alu 1 294 -17 260 364 0 68 chr15 388690 388822 -85306932 - MIR SINE MIR -62 146 24 293 215 31 0 chr15 389057 389122 -85306632 + MLT1K LTR MaLR 483 549 -39 184 373 45 22 chr15 389132 389266 -85306488 + L2 LINE L2 2772 2908 -406 1844 102 82 0 chr15 389276 389532 -85306222 - AluSq SINE Alu -2 311 35 215 323 162 35 chr15 389719 389917 -85305837 + L2 LINE L2 3045 3267 -5 512 272 35 99 chr15 390290 390405 -85305349 + MIR SINE MIR 25 123 -139 1739 113 4 0 chr15 390405 390635 -85305119 + AluSx SINE Alu 58 288 -24 512 272 35 99 chr15 390635 390721 -85305033 + MIR SINE MIR 123 213 -49 279 243 307 21 chr15 390924 391064 -85304690 - L2 LINE L2 -20 3293 3114 1445 156 91 4 chr15 391409 391652 -85304102 - AluSx SINE Alu 0 312 49 7198 90 13 21 chr15 391652 392717 -85303037 + MER11C LTR ERVK 1 1057 -14 335 167 0 0 chr15 392734 392788 -85302966 - AluSx SINE Alu -248 54 1 316 303 69 27 chr15 392821 393094 -85302660 - L1ME3 LINE L1 -206 5915 5650 270 291 112 8 chr15 393151 393394 -85302360 - L1ME3 LINE L1 -769 5395 5257 350 233 124 30 chr15 393502 393656 -85302098 + L1MC4a LINE L1 5722 5901 -1907 1426 172 26 63 chr15 393656 393959 -85301795 + AluJb SINE Alu 1 292 -20 350 233 124 30 chr15 393959 394006 -85301748 + L1MC4a LINE L1 5901 5942 -1866 929 131 24 42 chr15 394007 394175 -85301579 - AluSp SINE Alu -121 192 28 2290 164 38 19 chr15 394176 394652 -85301102 + LTR15 LTR ERV1 2 486 -7 229 139 0 23 chr15 394678 394721 -85301033 - AluSp SINE Alu -260 42 1 585 176 9 9 chr15 394750 394858 -85300896 + FLAM_C SINE Alu 2 109 -34 1611 155 3 50 chr15 394865 395187 -85300567 - AluSp SINE Alu 0 313 7 790 224 13 53 chr15 395222 395336 -85300418 + AluJb SINE Alu 2 104 -208 1678 162 7 13 chr15 395336 395645 -85300109 - AluSp SINE Alu -6 307 1 790 224 13 53 chr15 395645 395758 -85299996 + AluJb SINE Alu 104 220 -92 1069 155 16 0 chr15 395794 395987 -85299767 - AluSq SINE Alu 0 313 118 367 268 87 52 chr15 396111 396187 -85299567 + L1M4 LINE L1 3602 3674 -2472 2460 82 0 7 chr15 396187 396492 -85299262 + AluY SINE Alu 5 307 -4 367 268 87 52 chr15 396492 396784 -85298970 + L1M4 LINE L1 3674 3983 -2163 2115 124 3 22 chr15 396860 397175 -85298579 + AluSg SINE Alu 1 309 -1 6723 67 7 70 chr15 397531 398956 -85296798 + SVA Other Other 339 1402 0 28 48 0 0 chr15 398975 399017 -85296737 + AT_rich Low_complexity Low_complexity 1 42 0 377 311 137 58 chr15 400827 401093 -85294661 + L1M4 LINE L1 3104 3410 -2736 2568 55 0 16 chr15 401093 401403 -85294351 - AluY SINE Alu -6 305 1 377 311 137 58 chr15 401403 401515 -85294239 + L1M4 LINE L1 3410 3512 -2634 898 221 37 28 chr15 401533 401750 -85294004 - MER20 DNA MER1_type 0 219 1 495 297 83 81 chr15 402138 402546 -85293208 + HAL1 LINE L1 43 451 -2056 2038 144 3 26 chr15 402709 403022 -85292732 - AluJo SINE Alu -2 310 5 2170 138 3 0 chr15 403091 403396 -85292358 + AluSp SINE Alu 1 306 -7 229 234 127 25 chr15 403414 403611 -85292143 + HAL1 LINE L1 854 1070 -1437 455 254 114 89 chr15 403629 404153 -85291601 + MLT1H1 LTR MaLR 19 555 0 940 256 125 27 chr15 404154 404666 -85291088 + HAL1 LINE L1 1069 1630 -877 273 204 0 0 chr15 404696 404745 -85291009 - MIR SINE MIR -30 232 184 243 0 0 0 chr15 404757 404784 -85290970 + (CA)n Simple_repeat Simple_repeat 2 28 0 2020 116 32 0 chr15 404913 405197 -85290557 + AluSx SINE Alu 1 293 -19 2341 81 0 0 chr15 405877 406174 -85289580 + AluY SINE Alu 1 297 -14 235 319 8 34 chr15 406285 406404 -85289350 + CT-rich Low_complexity Low_complexity 6 121 0 21 0 0 0 chr15 407254 407275 -85288479 + AT_rich Low_complexity Low_complexity 1 21 0 2083 124 13 0 chr15 407468 407766 -85287988 - AluSg SINE Alu -6 304 3 1795 142 68 0 chr15 407926 408080 -85287674 - AluSx SINE Alu -12 300 158 1632 90 14 0 chr15 408080 408291 -85287463 - AluSg SINE Alu -85 225 12 1795 142 68 0 chr15 408291 408417 -85287337 - AluSx SINE Alu -154 158 1 904 144 0 0 chr15 408420 408552 -85287202 - FLAM_C SINE Alu -11 132 1 833 221 47 35 chr15 408957 409215 -85286539 - MER58B DNA MER1_type -1 340 80 497 171 83 138 chr15 409445 409548 -85286206 - L1MC5 LINE L1 -44 7917 7810 2133 141 0 0 chr15 409548 409861 -85285893 - AluSq SINE Alu 0 313 1 497 171 83 138 chr15 409861 410084 -85285670 - L1MC5 LINE L1 -151 7810 7609 184 226 113 0 chr15 410400 410453 -85285301 + MIR SINE MIR 111 169 -93 1206 171 6 99 chr15 410707 410939 -85284815 - AluJb SINE Alu 0 312 121 1641 141 6 32 chr15 410939 411252 -85284502 + AluSp SINE Alu 1 305 -8 1206 171 6 99 chr15 411252 411363 -85284391 - AluJb SINE Alu -191 121 1 1677 132 9 60 chr15 411390 411708 -85284046 + AluSp SINE Alu 1 302 -11 576 181 9 9 chr15 411709 411825 -85283929 - AluJb SINE Alu -195 117 2 885 84 15 0 chr15 411854 411985 -85283769 + AluSp SINE Alu 1 133 -180 1559 152 17 20 chr15 411993 412290 -85283464 + AluSp SINE Alu 1 296 -17 541 184 74 84 chr15 412308 412378 -85283376 - AluJb SINE Alu -123 189 120 1423 142 13 58 chr15 412378 412689 -85283065 + AluSp SINE Alu 1 297 -16 541 184 74 84 chr15 412689 412808 -85282946 - AluJb SINE Alu -192 120 2 818 109 0 23 chr15 412837 412965 -85282789 + AluSp SINE Alu 1 125 -188 770 181 126 85 chr15 412977 413131 -85282623 - AluJb SINE Alu -30 282 111 1517 157 13 47 chr15 413131 413431 -85282323 + AluSp SINE Alu 7 296 -17 770 181 126 85 chr15 413431 413546 -85282208 - AluJb SINE Alu -201 111 2 1602 176 37 7 chr15 413612 413907 -85281847 - LTR15 LTR ERV1 -6 487 184 833 172 32 0 chr15 413907 414064 -85281690 + AluSq SINE Alu 132 293 -20 331 179 0 0 chr15 414067 414123 -85281631 - FLAM_A SINE Alu -20 113 58 1984 36 0 59 chr15 414732 414985 -85280769 + AluY SINE Alu 60 297 -14 1372 156 5 0 chr15 415625 415830 -85279924 - L1MC1 LINE L1 -6 6327 6122 1036 183 0 0 chr15 415936 416111 -85279643 + FRAM SINE Alu 1 174 -2 1906 63 20 4 chr15 418044 418296 -85277458 + AluY SINE Alu 46 301 -10 2389 52 0 23 chr15 419221 419529 -85276225 + AluY SINE Alu 1 301 -10 2173 94 0 13 chr15 420163 420470 -85275284 - AluY SINE Alu -8 303 1 2580 68 0 0 chr15 421204 421514 -85274240 + AluY SINE Alu 1 310 -1 21 0 0 0 chr15 421527 421548 -85274206 + AT_rich Low_complexity Low_complexity 1 21 0 312 293 146 15 chr15 422131 422153 -85273601 - L1ME3 LINE L1 -1 6163 6145 1959 213 30 34 chr15 422153 422622 -85273132 + MLT1C LTR MaLR 1 467 0 312 293 146 15 chr15 422622 422831 -85272923 - L1ME3 LINE L1 -19 6145 5910 522 266 92 14 chr15 422847 423065 -85272689 - L1ME3 LINE L1 -325 5837 5603 1548 262 50 56 chr15 423100 423219 -85272535 - L1ME3 LINE L1 0 6231 6113 2265 111 0 0 chr15 423219 423516 -85272238 + AluSq SINE Alu 1 297 -16 1548 262 50 56 chr15 423516 424059 -85271695 - L1ME3 LINE L1 -118 6113 5573 2104 102 30 13 chr15 424157 424461 -85271293 - AluSg SINE Alu -1 309 1 26 50 0 0 chr15 424469 424509 -85271245 + AT_rich Low_complexity Low_complexity 1 40 0 367 282 44 52 chr15 424796 425140 -85270614 - L1ME3 LINE L1 -2421 3794 3454 * 422 315 127 20 chr15 425123 425729 -85270025 - L1ME3 LINE L1 -4616 1780 1110 2268 109 3 0 chr15 426897 427201 -85268553 - AluSc SINE Alu -2 307 3 717 246 182 0 chr15 429106 429293 -85266461 - MER58A DNA MER1_type 0 224 4 212 222 0 16 chr15 429858 429921 -85265833 + CT-rich Low_complexity Low_complexity 1 62 0 919 248 127 74 chr15 430089 430611 -85265143 - MLT1F1 LTR MaLR -2 565 15 2477 44 7 3 chr15 432204 432500 -85263254 + AluY SINE Alu 1 297 -14 1079 133 0 76 chr15 433568 433778 -85261976 - AluSq SINE Alu -119 194 1 2215 77 18 3 chr15 434071 434357 -85261397 - AluY SINE Alu -21 290 1 183 42 0 0 chr15 434885 434909 -85260845 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1245 181 96 22 chr15 436647 436918 -85258836 + AluJo SINE Alu 5 295 -17 2657 115 3 16 chr15 437525 437891 -85257863 + THE1B LTR MaLR 2 362 -2 23 0 0 0 chr15 438023 438046 -85257708 + AT_rich Low_complexity Low_complexity 1 23 0 3773 104 28 4 chr15 438331 438830 -85256924 + MER9 LTR ERVK 1 511 0 1530 237 101 47 chr15 439009 439751 -85256003 + L1M4 LINE L1 3670 4451 -1695 1246 136 0 0 chr15 439756 439932 -85255822 - AluJb SINE Alu -131 181 6 863 74 57 0 chr15 439975 440097 -85255657 + L1MA5 LINE L1 6172 6300 0 1126 69 0 21 chr15 441775 441919 -85253835 - AluSq SINE Alu -20 293 153 400 248 85 50 chr15 441929 442070 -85253684 - MIR SINE MIR -111 151 6 1577 173 118 7 chr15 442433 442705 -85253049 - AluJb SINE Alu 0 302 1 2146 132 0 0 chr15 442814 443118 -85252636 + AluSx SINE Alu 1 304 -8 2155 124 0 0 chr15 443396 443694 -85252060 + AluSx SINE Alu 3 300 -12 234 216 0 20 chr15 443694 443745 -85252009 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 443784 443827 -85251927 + AT_rich Low_complexity Low_complexity 1 43 0 21 82 0 0 chr15 444178 444227 -85251527 + AT_rich Low_complexity Low_complexity 1 49 0 282 154 77 0 chr15 444229 444281 -85251473 - L1ME4a LINE L1 -72 6049 5994 237 275 7 14 chr15 444291 444433 -85251321 + (TA)n Simple_repeat Simple_repeat 2 142 0 2210 109 3 6 chr15 444521 444832 -85250922 + AluSx SINE Alu 1 310 -2 345 211 225 14 chr15 444832 444974 -85250780 - L1ME4a LINE L1 -303 5818 5647 331 186 100 0 chr15 444978 445048 -85250706 - L1ME4a LINE L1 -518 5603 5527 1106 268 148 21 chr15 445317 446324 -85249430 + L1ME4a LINE L1 4409 5543 -746 2364 98 0 3 chr15 446329 446635 -85249119 - AluSx SINE Alu -7 305 1 491 247 184 80 chr15 446769 447008 -85248746 + L1ME4a LINE L1 5602 5815 -306 583 138 0 0 chr15 447008 447095 -85248659 + L1MA3 LINE L1 6219 6305 0 491 247 184 80 chr15 447095 447218 -85248536 + L1ME4a LINE L1 5815 5924 -197 2075 98 0 86 chr15 447218 447545 -85248209 - AluSx SINE Alu -13 299 1 491 247 184 80 chr15 447545 447642 -85248112 + L1ME4a LINE L1 5924 6110 -11 1732 183 8 80 chr15 448164 448564 -85247190 + MLT1A2 LTR MaLR 4 374 0 1432 129 67 21 chr15 448892 449132 -85246622 + L1PB4 LINE L1 5905 6155 -1 2490 71 0 0 chr15 449141 449450 -85246304 + AluY SINE Alu 1 309 -2 23 0 0 0 chr15 449672 449695 -85246059 + AT_rich Low_complexity Low_complexity 1 23 0 364 322 104 13 chr15 449799 450175 -85245579 - L1ME4a LINE L1 -3 6118 5709 408 323 47 58 chr15 450181 450695 -85245059 + L2 LINE L2 2766 3267 -5 1978 141 33 39 chr15 451369 451731 -85244023 + MLT1A1 LTR MaLR 6 365 0 3537 164 98 1 chr15 451771 452455 -85243299 + L1MB7 LINE L1 5377 6126 -58 335 229 21 31 chr15 452472 452568 -85243186 + L1MC4 LINE L1 6609 6703 -1339 * 347 250 23 0 chr15 452534 452622 -85243132 - L1MC4 LINE L1 -1339 6703 6614 251 245 0 43 chr15 452633 452727 -85243027 + L1MC4 LINE L1 6614 6703 -1339 348 253 0 53 chr15 452729 452824 -85242930 - L1MC4 LINE L1 -1339 6703 6614 2307 92 0 19 chr15 452877 453192 -85242562 + AluSp SINE Alu 1 309 -4 2096 121 17 10 chr15 453681 453979 -85241775 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr15 454069 454097 -85241657 + AT_rich Low_complexity Low_complexity 1 28 0 702 216 8 8 chr15 454109 454234 -85241520 + FLAM_C SINE Alu 3 127 -16 24 0 0 0 chr15 454336 454360 -85241394 + AT_rich Low_complexity Low_complexity 1 24 0 335 237 127 69 chr15 454687 454805 -85240949 + L1ME4a LINE L1 5743 5876 -245 2285 92 3 0 chr15 454805 455098 -85240656 + AluSp SINE Alu 1 294 -19 335 237 127 69 chr15 455098 455152 -85240602 + L1ME4a LINE L1 5876 5925 -196 2124 92 10 0 chr15 455271 455565 -85240189 + AluY SINE Alu 1 297 -14 26 30 0 0 chr15 456133 456166 -85239588 + AT_rich Low_complexity Low_complexity 1 33 0 977 61 0 0 chr15 458328 458442 -85237312 + AluY SINE Alu 1 114 -197 2344 89 0 3 chr15 458816 459119 -85236635 - AluSq SINE Alu -11 302 1 327 217 86 57 chr15 459121 459296 -85236458 + L1MC4a LINE L1 5703 5882 -1926 1837 146 4 0 chr15 460789 461064 -85234690 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 461066 461133 -85234621 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 461155 461180 -85234574 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4478 221 54 54 chr15 461180 461989 -85233765 + L1MDa LINE L1 1483 2290 -4250 1734 161 83 9 chr15 461989 462325 -85233429 - MER46B DNA MER2_type 0 236 1 4478 221 54 54 chr15 462325 462758 -85232996 + L1MDa LINE L1 2290 2721 -3819 2102 110 28 7 chr15 462758 463049 -85232705 + AluSq SINE Alu 1 297 -16 4478 221 54 54 chr15 463049 464751 -85231003 + L1MDa LINE L1 2721 4422 -2118 357 285 89 0 chr15 465664 465787 -85229967 - MIR SINE MIR 0 262 129 2279 101 7 3 chr15 465820 466126 -85229628 - AluY SINE Alu -4 307 1 1867 96 15 33 chr15 466381 466653 -85229101 + AluSp SINE Alu 34 300 -13 2008 118 0 36 chr15 466655 466960 -85228794 + AluSq SINE Alu 1 294 -19 358 302 42 28 chr15 466993 467205 -85228549 + L1MEc LINE L1 1850 2064 -4332 772 258 144 25 chr15 467214 467582 -85228172 + L1MEc LINE L1 2215 2626 -3589 416 172 0 0 chr15 468275 468339 -85227415 - AluSq SINE Alu -15 297 234 1251 126 0 0 chr15 468339 468506 -85227248 - AluSq SINE Alu -146 167 1 2137 203 69 19 chr15 468506 469072 -85226682 + L1MEc LINE L1 2752 3345 -2870 262 350 34 0 chr15 469095 469212 -85226542 - MIR SINE MIR -1 261 141 867 184 0 13 chr15 469220 469372 -85226382 - FRAM SINE Alu -21 155 6 1333 108 0 0 chr15 469748 469924 -85225830 + AluY SINE Alu 131 306 -5 2193 110 3 13 chr15 469933 470241 -85225513 + AluSq SINE Alu 1 305 -8 1532 155 43 18 chr15 470242 470520 -85225234 + L1MB3 LINE L1 5324 5608 -572 648 237 0 0 chr15 470521 470639 -85225115 + FLAM_C SINE Alu 2 119 -24 660 137 0 0 chr15 470649 470751 -85225003 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 470751 470783 -85224971 + AT_rich Low_complexity Low_complexity 1 32 0 2430 86 0 0 chr15 471195 471496 -85224258 + AluY SINE Alu 1 301 -10 458 226 73 7 chr15 472069 472206 -85223548 - MER21B LTR ERV1 -57 806 661 588 246 17 17 chr15 472213 472392 -85223362 + L1MDa LINE L1 1541 1719 -4821 2027 169 120 2 chr15 472437 472862 -85222892 + LTR53 LTR ERVL 5 479 -40 812 209 65 13 chr15 472935 473165 -85222589 + L1ME3 LINE L1 5323 5564 -2221 297 0 0 0 chr15 473275 473308 -85222446 + (TG)n Simple_repeat Simple_repeat 1 33 0 233 269 0 0 chr15 473314 473366 -85222388 + MER58B DNA MER1_type 13 64 -277 1627 87 8 75 chr15 473411 473663 -85222091 - AluSx SINE Alu -77 235 1 972 209 42 35 chr15 473669 473928 -85221826 + MER58B DNA MER1_type 80 340 -1 1932 140 13 13 chr15 474159 474459 -85221295 + AluSg1 SINE Alu 1 300 -9 854 223 118 28 chr15 475523 475810 -85219944 + L1ME2 LINE L1 5851 6163 -1 342 0 0 0 chr15 475963 476001 -85219753 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr15 476014 476042 -85219712 + AT_rich Low_complexity Low_complexity 1 28 0 436 314 147 17 chr15 476978 477060 -85218694 + L1MC4a LINE L1 5856 5926 -1882 1961 133 3 7 chr15 477060 477368 -85218386 + AluSq SINE Alu 1 307 -6 436 314 147 17 chr15 477368 477632 -85218122 + L1MC4a LINE L1 5926 6247 -1561 2115 134 3 6 chr15 477821 478134 -85217620 + AluSx SINE Alu 1 312 0 482 270 138 6 chr15 478226 478385 -85217369 + L1MD3 LINE L1 6663 6842 -1153 2381 109 0 0 chr15 478418 478729 -85217025 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr15 478762 478784 -85216970 + AT_rich Low_complexity Low_complexity 1 22 0 1513 115 5 0 chr15 479057 479265 -85216489 - AluSc SINE Alu -17 292 84 2599 56 0 0 chr15 480364 480666 -85215088 - AluY SINE Alu -9 302 1 244 263 62 0 chr15 480815 480895 -85214859 + L1ME3 LINE L1 5550 5634 -536 664 256 84 9 chr15 480898 481113 -85214641 + L1ME3 LINE L1 5733 5963 -199 21 36 0 0 chr15 481214 481242 -85214512 + AT_rich Low_complexity Low_complexity 1 28 0 234 225 122 27 chr15 482266 482399 -85213355 + MIR SINE MIR 52 203 -59 2079 137 0 0 chr15 482454 482761 -85212993 + AluSx SINE Alu 1 307 -5 2376 71 0 19 chr15 483114 483424 -85212330 - AluY SINE Alu -7 304 1 218 122 0 41 chr15 484674 484723 -85211031 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 993 220 114 32 chr15 485002 485379 -85210375 + LTR37A LTR ERV1 19 426 0 420 20 0 0 chr15 486073 486122 -85209632 + (TA)n Simple_repeat Simple_repeat 2 50 0 2182 102 0 30 chr15 486385 486688 -85209066 - AluY SINE Alu -13 298 5 306 125 0 0 chr15 486692 486740 -85209014 + (T)n Simple_repeat Simple_repeat 1 48 0 205 180 49 0 chr15 487261 487322 -85208432 + (TAA)n Simple_repeat Simple_repeat 3 66 0 28 0 0 0 chr15 487599 487627 -85208127 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 487883 487928 -85207826 + AT_rich Low_complexity Low_complexity 1 45 0 185 232 143 0 chr15 489055 489111 -85206643 + MIR SINE MIR 106 169 -93 1406 155 12 81 chr15 489370 489587 -85206167 - AluJo SINE Alu 0 312 124 1688 116 23 76 chr15 489587 489889 -85205865 + AluSp SINE Alu 2 287 -26 1406 155 12 81 chr15 489889 490006 -85205748 - AluJo SINE Alu -188 124 1 1749 144 13 16 chr15 490040 490346 -85205408 + AluSp SINE Alu 5 309 -4 616 179 18 9 chr15 490346 490458 -85205296 - AluJb SINE Alu -198 114 2 815 133 23 0 chr15 490489 490617 -85205137 + AluSp SINE Alu 3 133 -180 1761 147 13 19 chr15 490622 490935 -85204819 + AluSp SINE Alu 1 311 -2 685 131 9 9 chr15 490941 491048 -85204706 - AluJb SINE Alu -204 108 2 1739 145 30 13 chr15 491078 491382 -85204372 + AluSp SINE Alu 2 310 -3 372 97 194 0 chr15 491384 491456 -85204298 - AluJb SINE Alu -193 109 24 1633 218 128 2 chr15 491457 491870 -85203884 + MLT2B1 LTR ERVL 1 465 -55 1182 117 6 0 chr15 491870 492041 -85203713 + L1PA11 LINE L1 5771 5942 -232 1642 216 90 38 chr15 492044 492488 -85203266 + MLT1D LTR MaLR 39 505 0 1870 195 23 21 chr15 493087 493472 -85202282 - L1MB2 LINE L1 -8 6163 5778 315 0 0 0 chr15 493472 493507 -85202247 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 886 168 14 0 chr15 493507 493650 -85202104 - AluJb SINE Alu -30 282 138 1735 153 19 16 chr15 494133 494441 -85201313 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 497467 497500 -85198254 + AT_rich Low_complexity Low_complexity 1 33 0 576 204 138 13 chr15 497543 497695 -85198059 - MIR SINE MIR -64 198 28 2034 109 13 33 chr15 497848 498151 -85197603 - AluSx SINE Alu -13 299 3 2057 141 0 0 chr15 498516 498815 -85196939 - AluSx SINE Alu -13 299 1 2401 92 0 0 chr15 499184 499488 -85196266 - AluSg SINE Alu -2 308 5 2213 262 96 10 chr15 499502 500277 -85195477 - L1ME1 LINE L1 -3 6163 5323 630 171 49 0 chr15 500353 500476 -85195278 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 500802 500835 -85194919 + AT_rich Low_complexity Low_complexity 1 33 0 2704 160 86 0 chr15 500835 501359 -85194395 - L1MB3 LINE L1 -8 6175 5607 2167 92 7 3 chr15 501365 501657 -85194097 - AluY SINE Alu -18 293 1 909 157 0 0 chr15 501699 501833 -85193921 - FRAM SINE Alu -25 151 18 657 218 46 6 chr15 502708 502882 -85192872 + L1ME2 LINE L1 5982 6162 -2 2220 110 3 0 chr15 502902 503202 -85192552 + AluSx SINE Alu 1 301 -11 874 160 17 66 chr15 503842 504023 -85191731 - AluSg/x SINE Alu -13 297 126 351 280 0 24 chr15 504367 504492 -85191262 + CT-rich Low_complexity Low_complexity 3 124 0 507 291 0 7 chr15 504526 505197 -85190557 + CT-rich Low_complexity Low_complexity 1 666 0 283 325 195 0 chr15 505851 505974 -85189780 - MIR3 SINE MIR -9 199 53 1344 97 0 0 chr15 506314 506490 -85189264 - AluSp SINE Alu -2 311 136 540 254 179 20 chr15 506625 506826 -85188928 - MIR SINE MIR -10 252 20 363 44 0 0 chr15 507020 507065 -85188689 + (CA)n Simple_repeat Simple_repeat 2 46 0 227 192 19 0 chr15 507069 507121 -85188633 - L1MC/D LINE L1 -1871 5937 5885 268 265 68 26 chr15 508454 508571 -85187183 - L2 LINE L2 -5 3308 3187 195 282 176 0 chr15 508568 508653 -85187101 - MIR3 SINE MIR 0 208 109 * 7247 39 0 0 chr15 508917 509862 -85185892 - L1PA4 LINE L1 -3 6152 5209 195 42 0 0 chr15 512143 512167 -85183587 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr15 512441 512467 -85183287 + AT_rich Low_complexity Low_complexity 1 26 0 655 218 69 55 chr15 514929 515131 -85180623 + MIR SINE MIR 58 262 0 25 0 0 0 chr15 515804 515829 -85179925 + AT_rich Low_complexity Low_complexity 1 25 0 2007 128 0 34 chr15 515829 516126 -85179628 - AluSx SINE Alu -25 287 1 207 0 0 0 chr15 516949 516972 -85178782 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 98 0 54 chr15 518032 518348 -85177406 + AluSg SINE Alu 1 299 -11 29 0 0 0 chr15 518733 518762 -85176992 + AT_rich Low_complexity Low_complexity 1 29 0 2017 141 0 7 chr15 518784 519083 -85176671 - AluSx SINE Alu -15 297 1 189 121 0 0 chr15 521100 521133 -85174621 + (TG)n Simple_repeat Simple_repeat 2 34 0 2371 64 0 0 chr15 521390 521699 -85174055 + AluY SINE Alu 1 309 0 902 209 43 2 chr15 522370 522576 -85173178 - MIR SINE MIR -21 241 31 2156 107 3 0 chr15 522578 522876 -85172878 - AluSx SINE Alu -13 299 1 189 171 0 0 chr15 523760 523795 -85171959 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1681 139 9 89 chr15 523796 524133 -85171621 - AluJo SINE Alu -2 310 1 2515 194 79 70 chr15 524141 525022 -85170732 - L1ME1 LINE L1 -65 6101 5223 2557 113 32 32 chr15 525022 525456 -85170298 - Tigger2a DNA MER2_type 0 434 1 2515 194 79 70 chr15 525456 525487 -85170267 - L1ME1 LINE L1 -943 5223 5194 2240 102 3 0 chr15 526024 526318 -85169436 - AluSx SINE Alu -12 300 6 24 0 0 0 chr15 526497 526521 -85169233 + AT_rich Low_complexity Low_complexity 1 24 0 417 241 7 0 chr15 527155 527296 -85168458 - L1MEd LINE L1 -5279 840 699 1020 199 80 4 chr15 527319 527545 -85168209 - L1MD3 LINE L1 -24 7971 7729 385 248 35 0 chr15 527543 527656 -85168098 - L1MEd LINE L1 -5405 714 598 * 302 269 38 17 chr15 528063 528240 -85167514 + MER58C DNA MER1_type 9 206 -9 1884 166 0 0 chr15 529149 529459 -85166295 - AluJb SINE Alu 0 310 1 242 413 51 22 chr15 531022 531160 -85164594 - L2 LINE L2 -22 3250 3109 364 279 36 36 chr15 532479 532590 -85163164 + MER91A DNA MER1_type 66 176 -20 229 266 142 9 chr15 532831 532944 -85162810 - L2 LINE L2 -1 3312 3185 2294 75 0 4 chr15 533057 533361 -85162393 - AluSc SINE Alu 0 303 1 967 198 81 102 chr15 533438 533772 -85161982 + MER58B DNA MER1_type 5 331 -10 447 290 92 22 chr15 533785 534026 -85161728 + L2 LINE L2 2770 3037 -276 440 319 81 0 chr15 534745 534905 -85160849 - MIR SINE MIR -17 245 73 244 167 10 83 chr15 535102 535198 -85160556 - L1MC4a LINE L1 -1749 6059 5971 379 211 29 0 chr15 535279 535383 -85160371 - L1MC4a LINE L1 -1853 5955 5849 215 250 15 0 chr15 535577 535645 -85160109 + CT-rich Low_complexity Low_complexity 4 72 0 1614 169 59 10 chr15 536160 536450 -85159304 - AluJb SINE Alu -8 304 1 260 296 9 28 chr15 536534 536642 -85159112 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 729 282 55 35 chr15 536720 536975 -85158779 + MIR SINE MIR 3 262 0 2586 46 0 0 chr15 537609 537911 -85157843 - AluY SINE Alu -8 303 2 6803 32 7 3 chr15 539507 540374 -85155380 - L1PA4 LINE L1 -2 6153 5284 2023 126 11 52 chr15 541295 541643 -85154111 + MER1B DNA MER1_type 3 336 -1 319 278 97 72 chr15 541830 542261 -85153493 + HAL1b LINE L1 70 511 -837 1918 95 103 0 chr15 542579 542841 -85152913 - AluSx SINE Alu -23 289 1 315 289 123 54 chr15 542884 543586 -85152168 + L1MC/D LINE L1 3663 4412 -1734 722 205 26 19 chr15 543824 543980 -85151774 + FAM SINE Alu 2 158 -17 2509 61 0 0 chr15 544014 544309 -85151445 + AluY SINE Alu 1 295 -16 388 274 139 30 chr15 544369 544570 -85151184 + L1MC/D LINE L1 4624 4846 -1300 441 249 83 28 chr15 544895 545112 -85150642 + L1MC/D LINE L1 5254 5482 -2326 189 308 218 38 chr15 545236 545369 -85150385 + L2 LINE L2 2595 2751 -563 263 244 126 0 chr15 545434 545569 -85150185 + MER103 DNA DNA 13 164 -2 181 373 42 0 chr15 545982 546100 -85149654 - MIR SINE MIR -26 236 114 282 29 0 0 chr15 546553 546588 -85149166 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2316 86 0 3 chr15 546588 546882 -85148872 - AluY SINE Alu -16 295 1 363 286 62 51 chr15 547898 548076 -85147678 + L1ME LINE L1 12 191 -5879 23 92 0 0 chr15 548233 548298 -85147456 + AT_rich Low_complexity Low_complexity 1 65 0 31 58 0 0 chr15 548429 548481 -85147273 + AT_rich Low_complexity Low_complexity 1 52 0 302 286 103 59 chr15 548722 548925 -85146829 - HAL1b LINE L1 -442 906 695 350 279 50 19 chr15 549130 549291 -85146463 - HAL1b LINE L1 -890 458 293 21 36 0 0 chr15 550431 550459 -85145295 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 550742 550764 -85144990 + AT_rich Low_complexity Low_complexity 1 22 0 2221 108 0 7 chr15 551023 551319 -85144435 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr15 551337 551366 -85144388 + (TA)n Simple_repeat Simple_repeat 2 30 0 392 271 148 39 chr15 551931 552134 -85143620 + HAL1 LINE L1 1317 1541 -966 445 296 57 40 chr15 552153 552454 -85143300 + MER46C DNA MER2_type 3 308 -30 24 0 0 0 chr15 552642 552666 -85143088 + AT_rich Low_complexity Low_complexity 1 24 0 213 208 59 99 chr15 553142 553243 -85142511 - MIR SINE MIR -90 172 76 288 333 41 65 chr15 554248 554371 -85141383 + MIR3 SINE MIR 67 186 -22 216 135 0 0 chr15 554402 554439 -85141315 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 233 29 29 0 chr15 554439 554473 -85141281 + (TG)n Simple_repeat Simple_repeat 2 36 0 2148 134 27 3 chr15 554671 555006 -85140748 + MER61A LTR ERV1 1 343 0 1072 204 7 57 chr15 555006 555305 -85140449 + MER61A-int LTR ERV1 1 284 -4933 1349 100 0 17 chr15 555412 555592 -85140162 - AluSq SINE Alu -136 177 1 26 30 0 0 chr15 555720 555753 -85140001 + AT_rich Low_complexity Low_complexity 1 33 0 3739 151 73 9 chr15 557010 557671 -85138083 + L1PBa LINE L1 144 846 -6017 417 182 39 0 chr15 557774 557851 -85137903 + LTR22B LTR ERVK 413 492 0 2490 108 8 17 chr15 557853 558204 -85137550 + HERVK22 LTR ERVK 3 350 -6487 3787 32 0 0 chr15 558232 558674 -85137080 - L1PA2 LINE L1 0 6155 5714 4470 96 2 3 chr15 558674 559255 -85136499 - HERVK22 LTR ERVK -1327 5510 4929 1606 213 80 49 chr15 559355 559812 -85135942 + L1ME4a LINE L1 4801 5276 -890 2092 92 0 39 chr15 559812 560118 -85135636 + AluSx SINE Alu 1 294 -18 1606 213 80 49 chr15 560118 560468 -85135286 + L1ME4a LINE L1 5276 5614 -552 453 108 0 0 chr15 560570 560635 -85135119 - Alu SINE Alu -244 65 1 3455 39 34 17 chr15 561475 561940 -85133814 - L1P LINE L1 -2026 4120 3648 1401 30 0 6 chr15 561936 562104 -85133650 + L1PA4 LINE L1 5850 6016 -139 * 624 330 29 0 chr15 562492 562701 -85133053 + MER58A DNA MER1_type 6 220 -4 2185 161 39 3 chr15 562800 563186 -85132568 + MER57A LTR ERV1 1 400 -3 249 270 18 49 chr15 563470 563633 -85132121 - L1M4 LINE L1 -2296 3850 3693 9801 67 99 5 chr15 563884 565222 -85130532 - L1P LINE L1 -4683 1463 1 945 136 7 0 chr15 565223 565363 -85130391 + HERVK22 LTR ERVK 339 479 -6358 1142 137 6 0 chr15 567111 567286 -85128468 + AluSq SINE Alu 1 176 -137 1107 189 62 8 chr15 567386 567629 -85128125 - L1P LINE L1 -1762 4384 4129 2052 127 16 13 chr15 567629 567944 -85127810 - MER49 LTR ERV1 -599 324 9 2060 61 3 54 chr15 568361 568676 -85127078 - AluY SINE Alu 0 300 1 1277 143 25 94 chr15 568925 569211 -85126543 - L1M2 LINE L1 -520 5780 5515 354 287 112 79 chr15 569443 569861 -85125893 + L1ME4a LINE L1 5650 6081 -40 793 76 9 0 chr15 571479 571584 -85124170 - AluSq/x SINE Alu -205 107 2 1404 158 41 21 chr15 571624 571915 -85123839 + AluJo SINE Alu 1 297 -15 2124 64 3 71 chr15 571976 572302 -85123452 + AluY SINE Alu 1 304 -7 437 263 89 0 chr15 572340 572519 -85123235 - HAL1b LINE L1 -183 1165 971 1644 141 16 4 chr15 572527 572783 -85122971 + AluJb SINE Alu 1 259 -53 405 277 77 51 chr15 573043 573466 -85122288 - MER41E LTR ERV1 -59 453 148 220 387 106 0 chr15 573756 573898 -85121856 - L2 LINE L2 0 3272 3116 853 261 119 17 chr15 574024 574319 -85121435 + L2 LINE L2 2989 3313 0 900 269 92 68 chr15 574598 575424 -85120330 + HAL1 LINE L1 446 1291 -1216 2990 123 69 2 chr15 575494 575999 -85119755 - L1MC1 LINE L1 -1 6332 5794 216 0 0 0 chr15 576099 576123 -85119631 + (A)n Simple_repeat Simple_repeat 1 24 0 1595 113 117 25 chr15 576540 576674 -85119080 - AluSq SINE Alu -14 299 179 2433 62 0 10 chr15 576674 576982 -85118772 - AluY SINE Alu -4 307 3 1595 113 117 25 chr15 576982 577121 -85118633 - AluSq SINE Alu -134 179 1 374 247 47 40 chr15 577165 577315 -85118439 + L1MC5 LINE L1 7539 7689 -272 1607 173 43 56 chr15 577471 577659 -85118095 - L1PA16 LINE L1 -27 6139 5957 1752 120 25 11 chr15 577659 577834 -85117920 - AluJb SINE Alu -2 310 128 2384 57 0 10 chr15 577834 578133 -85117621 - AluY SINE Alu -15 296 1 1752 120 25 11 chr15 578133 578240 -85117514 - AluJb SINE Alu -184 128 24 1607 173 43 56 chr15 578240 578426 -85117328 - L1PA16 LINE L1 -209 5957 5770 22 56 0 0 chr15 578720 578756 -85116998 + AT_rich Low_complexity Low_complexity 1 36 0 2373 68 0 0 chr15 578784 579095 -85116659 - AluY SINE Alu 0 311 1 328 251 16 64 chr15 579420 579607 -85116147 + C-rich Low_complexity Low_complexity 3 180 0 267 31 0 0 chr15 579670 579702 -85116052 + (CGG)n Simple_repeat Simple_repeat 3 34 0 291 200 0 71 chr15 579840 579980 -85115774 + G-rich Low_complexity Low_complexity 4 133 0 465 206 277 37 chr15 581120 581218 -85114536 + L1MC3 LINE L1 7344 7417 -491 2057 98 7 0 chr15 581218 581514 -85114240 + AluY SINE Alu 1 298 -13 465 206 277 37 chr15 581514 581659 -85114095 + L1MC3 LINE L1 7417 7739 -169 1079 157 0 0 chr15 581770 581942 -85113812 + AluSp SINE Alu 136 307 -6 476 98 0 0 chr15 582089 582150 -85113604 - Alu SINE Alu -256 62 2 2109 78 0 0 chr15 582194 582463 -85113291 + AluY SINE Alu 30 298 -13 2023 90 65 0 chr15 583057 583347 -85112407 + AluSq SINE Alu 1 309 -4 386 77 0 0 chr15 583476 583533 -85112221 - L1PB4 LINE L1 -210 5951 5895 269 128 0 0 chr15 583534 583573 -85112181 + L1PB4 LINE L1 5954 5992 -164 483 101 0 0 chr15 583574 583643 -85112111 - MER50 LTR ERV1 -167 567 499 576 95 19 38 chr15 583740 583845 -85111909 + L1PB4 LINE L1 6053 6155 -1 238 286 18 0 chr15 584053 584109 -85111645 + L2 LINE L2 3237 3293 -20 2108 93 28 0 chr15 584109 584400 -85111354 + AluSp SINE Alu 1 299 -14 460 162 81 0 chr15 584400 584499 -85111255 + FLAM_C SINE Alu 34 140 -3 1267 130 27 45 chr15 584643 584733 -85111021 + MER50 LTR ERV1 504 594 -140 2007 122 3 0 chr15 584733 585020 -85110734 + AluSx SINE Alu 5 292 -20 1267 130 27 45 chr15 585020 585152 -85110602 + MER50 LTR ERV1 594 722 -12 1894 156 25 15 chr15 585152 585478 -85110276 + MER50-int LTR ERV1 7 335 -6870 2000 106 17 3 chr15 585533 585834 -85109920 + AluSq SINE Alu 1 305 -8 2241 77 0 10 chr15 586025 586324 -85109430 + AluY SINE Alu 1 296 -15 1941 115 14 10 chr15 586366 586661 -85109093 + AluSx SINE Alu 1 296 -16 2285 61 3 10 chr15 586661 586955 -85108799 + AluY SINE Alu 1 293 -18 1240 101 0 0 chr15 586964 587132 -85108622 + AluSg/x SINE Alu 131 298 -12 276 155 69 0 chr15 587196 587254 -85108500 + L1ME4a LINE L1 6059 6120 -1 791 189 0 0 chr15 587569 587701 -85108053 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr15 587715 587756 -85107998 + AT_rich Low_complexity Low_complexity 1 41 0 1556 145 53 18 chr15 587950 588232 -85107522 + AluJo SINE Alu 1 292 -20 230 269 0 77 chr15 588553 588631 -85107123 + MLT1G LTR MaLR 219 290 -300 1707 150 63 3 chr15 589640 589974 -85105780 - L1MB3 LINE L1 -4 6179 5826 2085 193 23 2 chr15 590033 590468 -85105286 + L1 LINE L1 4575 5018 -1128 1714 128 0 4 chr15 590468 590733 -85105021 + AluSx SINE Alu 39 302 -10 1088 133 0 12 chr15 591738 591903 -85103851 + AluSg/x SINE Alu 136 298 -14 586 149 39 0 chr15 591906 592039 -85103715 + L1M4 LINE L1 3167 3309 -2837 376 265 23 45 chr15 592036 592083 -85103671 - L1M4b LINE L1 -6717 142 95 * 198 0 0 0 chr15 592083 592105 -85103649 + (TG)n Simple_repeat Simple_repeat 1 22 0 2021 95 0 21 chr15 592105 592389 -85103365 - AluY SINE Alu -33 278 1 376 265 23 45 chr15 592389 592472 -85103282 - L1M4b LINE L1 -6762 97 14 564 266 157 4 chr15 592782 592977 -85102777 - L1MC4 LINE L1 -499 7389 7225 1817 163 0 3 chr15 592977 593271 -85102483 - AluJo SINE Alu -19 293 1 564 266 157 4 chr15 593271 593318 -85102436 - L1MC4 LINE L1 -663 7225 7037 2008 147 0 0 chr15 593406 593712 -85102042 + AluSx SINE Alu 1 306 -6 1935 127 14 0 chr15 593768 594059 -85101695 + AluSx SINE Alu 1 295 -17 2202 70 3 23 chr15 594059 594358 -85101396 + AluSp SINE Alu 1 293 -20 1793 149 14 0 chr15 595627 595922 -85099832 + AluJb SINE Alu 1 299 -13 1951 138 0 3 chr15 596671 596969 -85098785 + AluSx SINE Alu 1 297 -15 209 200 14 29 chr15 597574 597644 -85098110 + T-rich Low_complexity Low_complexity 4 72 0 297 255 71 20 chr15 597661 597759 -85097995 - LTR52 LTR ERVL -315 106 4 798 69 8 10 chr15 598555 598802 -85096952 - AluY SINE Alu -8 303 1 515 189 47 142 chr15 599042 599172 -85096582 - L1MC4 LINE L1 -10 8032 7891 968 205 85 0 chr15 599172 599372 -85096382 - MER20 DNA MER1_type -2 217 1 515 189 47 142 chr15 599372 599600 -85096154 - L1MC4 LINE L1 -151 7891 7708 1441 155 109 53 chr15 599664 599948 -85095806 + AluSx SINE Alu 1 300 -2 1731 231 55 4 chr15 599948 600399 -85095355 + L1M4 LINE L1 3672 4145 -2001 1390 74 69 0 chr15 600500 600689 -85095065 - AluSg SINE Alu -108 202 1 1868 177 42 0 chr15 602224 602558 -85093196 - MER7A DNA MER2_type 0 346 1 279 324 27 26 chr15 605912 606075 -85089679 + MIR SINE MIR 23 182 -26 1912 142 3 7 chr15 607092 607395 -85088359 + AluSx SINE Alu 1 302 -10 2122 99 3 0 chr15 607443 607750 -85088004 + AluSp SINE Alu 1 308 0 2274 97 0 3 chr15 607752 608060 -85087694 + AluSg SINE Alu 1 307 -3 1052 116 107 28 chr15 608327 608542 -85087212 - AluJo SINE Alu 0 312 81 2201 82 3 3 chr15 609043 609336 -85086418 + AluSp SINE Alu 1 293 -20 2089 220 45 6 chr15 609613 610099 -85085655 - MLT1D LTR MaLR 0 505 1 8589 60 7 10 chr15 610353 611427 -85084327 - MER11C LTR ERVK 0 1071 1 966 279 20 26 chr15 611721 612069 -85083685 - L1ME1 LINE L1 -5 6161 5816 2019 91 16 26 chr15 612075 612383 -85083371 - AluY SINE Alu -6 305 1 820 199 51 0 chr15 612383 612539 -85083215 - L1ME1 LINE L1 -475 5689 5526 1315 103 0 73 chr15 612894 613098 -85082656 - MER1B DNA MER1_type 0 339 151 355 227 76 42 chr15 613132 613251 -85082503 - MLT1H LTR MaLR 0 549 427 428 119 415 0 chr15 613359 613477 -85082277 - MLT1H LTR MaLR -382 167 1 1959 63 0 12 chr15 614112 614212 -85081542 + AluSc SINE Alu 34 134 -175 2269 70 3 13 chr15 614212 614510 -85081244 + AluSg SINE Alu 1 295 -15 1959 63 0 12 chr15 614510 614662 -85081092 + AluSc SINE Alu 134 283 -26 2183 85 7 0 chr15 614933 615238 -85080516 - AluSg SINE Alu -3 307 1 2273 67 0 0 chr15 615248 615547 -85080207 - AluY SINE Alu -12 299 1 1475 167 29 0 chr15 617128 617409 -85078345 - AluJb SINE Alu -23 289 1 2291 71 0 7 chr15 617480 617789 -85077965 - AluSx SINE Alu -5 307 1 223 273 208 26 chr15 617848 618002 -85077752 + MIR SINE MIR 81 262 0 609 234 208 19 chr15 618187 618456 -85077298 + L1MA9 LINE L1 5957 6276 -36 2239 75 7 0 chr15 618701 618996 -85076758 - AluSq SINE Alu -16 297 1 237 285 254 35 chr15 619119 619347 -85076407 + L2 LINE L2 3036 3313 0 2165 82 0 26 chr15 619546 619685 -85076069 + AluY SINE Alu 1 142 -169 2087 105 0 13 chr15 619685 619991 -85075763 + AluSg SINE Alu 1 302 -8 2165 82 0 26 chr15 619991 620154 -85075600 + AluY SINE Alu 142 295 -16 262 242 105 42 chr15 620264 620359 -85075395 + MIR SINE MIR 21 121 -87 2288 67 0 7 chr15 620360 620658 -85075096 + AluY SINE Alu 1 296 -15 949 97 8 0 chr15 620853 620987 -85074767 - AluSq/x SINE Alu -178 135 1 1983 108 18 0 chr15 621269 621555 -85074199 + AluSg SINE Alu 1 291 -19 734 239 6 12 chr15 621578 621741 -85074013 + AluJo SINE Alu 118 279 -33 204 67 0 0 chr15 621741 621771 -85073983 + (CAA)n Simple_repeat Simple_repeat 1 30 0 216 132 105 0 chr15 621921 621959 -85073795 + L2 LINE L2 3221 3262 -10 1038 202 179 22 chr15 623015 623412 -85072342 - LTR53 LTR ERVL 0 519 1 403 208 24 7 chr15 623506 623603 -85072151 + AluJ/FLAM SINE Alu 1 83 -219 2269 97 0 0 chr15 623860 624158 -85071596 + AluSg SINE Alu 1 298 -12 471 209 18 27 chr15 624158 624268 -85071486 - L1MA10 LINE L1 -4 6330 6222 1436 223 67 16 chr15 624301 624674 -85071080 - L1ME2 LINE L1 0 6164 5773 344 160 0 27 chr15 624680 624700 -85071054 - Alu SINE Alu -254 48 29 1962 115 0 36 chr15 624700 625005 -85070749 - AluSx SINE Alu -18 294 1 344 160 0 27 chr15 625005 625053 -85070701 - Alu SINE Alu -273 29 2 182 222 19 0 chr15 625093 625147 -85070607 + (TA)n Simple_repeat Simple_repeat 2 56 0 1445 222 90 41 chr15 625165 625252 -85070502 - L1ME2 LINE L1 -873 5273 5192 2131 92 0 44 chr15 625252 625424 -85070330 - AluSg SINE Alu -7 303 125 2379 76 0 0 chr15 625424 625727 -85070027 - AluY SINE Alu -8 303 1 2028 127 0 3 chr15 625727 626026 -85069728 - AluSx SINE Alu -14 298 1 2131 92 0 44 chr15 626026 626169 -85069585 - AluSg SINE Alu -183 127 1 1445 222 90 41 chr15 626169 626590 -85069164 - L1ME2 LINE L1 -954 5192 4740 2167 78 7 14 chr15 626591 626887 -85068867 - AluY SINE Alu -17 294 1 2108 111 0 0 chr15 626891 627188 -85068566 - AluSc SINE Alu -12 297 1 2011 117 3 3 chr15 627447 627745 -85068009 - AluSg SINE Alu -12 298 1 2334 93 0 0 chr15 627768 628081 -85067673 - AluSp SINE Alu 0 313 1 463 217 0 0 chr15 628380 628472 -85067282 - FLAM_A SINE Alu -12 130 39 2047 132 7 3 chr15 628527 628837 -85066917 + AluSx SINE Alu 1 311 -1 2242 70 3 13 chr15 629547 629845 -85065909 - AluY SINE Alu -16 295 1 276 191 90 34 chr15 629954 630043 -85065711 - L1MC5 LINE L1 -1 7994 7845 454 250 31 31 chr15 630258 630418 -85065336 - MLT1H LTR MaLR -292 257 98 218 287 92 46 chr15 630581 630668 -85065086 + L2 LINE L2 3182 3272 0 24 32 0 0 chr15 631477 631508 -85064246 + AT_rich Low_complexity Low_complexity 1 31 0 2137 91 3 10 chr15 632168 632465 -85063289 + AluSx SINE Alu 1 295 -17 2179 98 3 0 chr15 633358 633654 -85062100 - AluSg SINE Alu -13 297 1 2167 109 3 0 chr15 633654 633957 -85061797 - AluSx SINE Alu -7 305 2 763 177 35 91 chr15 633957 634069 -85061685 + L1M4 LINE L1 4212 4329 -1817 2190 100 3 13 chr15 634069 634378 -85061376 + AluSx SINE Alu 1 306 -6 2242 84 3 0 chr15 634386 634684 -85061070 + AluSq SINE Alu 2 300 -13 2359 70 0 10 chr15 634688 634990 -85060764 + AluY SINE Alu 1 299 -12 763 177 35 91 chr15 634990 635095 -85060659 + L1M4 LINE L1 4339 4430 -1716 409 206 0 0 chr15 635096 635164 -85060590 + AluS SINE Alu 1 68 -232 761 177 67 34 chr15 635165 635325 -85060429 + L1M4 LINE L1 5110 5280 -866 2058 106 13 3 chr15 635325 635627 -85060127 + AluSq SINE Alu 2 306 -7 761 177 67 34 chr15 635627 635675 -85060079 + L1M4 LINE L1 5280 5325 -821 2042 96 3 3 chr15 635682 635964 -85059790 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr15 635964 635990 -85059764 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 287 211 30 39 chr15 636383 636473 -85059281 + MIR SINE MIR 73 164 -44 1817 169 0 10 chr15 637079 637393 -85058361 + AluJo SINE Alu 1 311 -1 2113 77 50 10 chr15 638134 638432 -85057322 - AluY SINE Alu -1 310 1 1818 271 92 2 chr15 638984 639616 -85056138 - MER20B DNA MER1_type -61 722 34 2112 92 13 10 chr15 639714 640018 -85055736 + AluSq SINE Alu 1 305 -8 2085 91 13 20 chr15 640399 640697 -85055057 + AluSp SINE Alu 1 296 -17 1036 282 35 47 chr15 640728 641132 -85054622 - L2 LINE L2 -5 3308 2910 1117 199 93 31 chr15 641149 641440 -85054314 + MLT1F LTR MaLR 21 329 -213 310 254 106 63 chr15 641459 641648 -85054106 + L1ME LINE L1 1918 2114 -4282 374 301 22 37 chr15 641817 641953 -85053801 + L1ME LINE L1 5245 5378 -837 294 197 135 16 chr15 642008 642140 -85053614 + L1ME LINE L1 5483 5644 -587 194 277 138 15 chr15 642140 642205 -85053549 + L2 LINE L2 2685 2757 -557 371 276 75 92 chr15 642254 642417 -85053337 + L2 LINE L2 3046 3205 -108 2179 81 0 33 chr15 642417 642724 -85053030 + AluSx SINE Alu 1 297 -15 371 276 75 92 chr15 642724 642799 -85052955 + L2 LINE L2 3205 3280 -33 2403 82 0 0 chr15 642823 643127 -85052627 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 643222 643244 -85052510 + AT_rich Low_complexity Low_complexity 1 22 0 2323 76 0 3 chr15 643380 643682 -85052072 + AluY SINE Alu 1 301 -10 2036 123 13 0 chr15 644164 644472 -85051282 + AluSx SINE Alu 1 312 0 2410 74 0 0 chr15 644549 644860 -85050894 - AluY SINE Alu 0 311 1 1885 122 40 3 chr15 645292 645588 -85050166 - AluSx SINE Alu -5 307 1 314 253 0 0 chr15 646218 646305 -85049449 - HAL1 LINE L1 -143 2364 2278 1200 239 98 27 chr15 646345 647017 -85048737 - HAL1 LINE L1 -357 2150 1527 1626 167 21 10 chr15 647017 647305 -85048449 - AluSx SINE Alu -21 291 1 1200 239 98 27 chr15 647305 647318 -85048436 - HAL1 LINE L1 -980 1527 1516 2316 84 0 0 chr15 647318 647616 -85048138 - AluSq SINE Alu -15 298 1 1200 239 98 27 chr15 647616 647898 -85047856 - HAL1 LINE L1 -991 1516 1030 1153 136 0 0 chr15 648160 648337 -85047417 - AluJb SINE Alu -2 310 134 1735 162 6 16 chr15 648337 648652 -85047102 - AluSx SINE Alu 0 312 1 239 258 0 34 chr15 648882 648971 -85046783 - L1ME LINE L1 -5687 383 298 303 330 37 18 chr15 649093 649202 -85046552 - L1ME LINE L1 -5901 169 59 319 248 15 131 chr15 649271 649408 -85046346 - HAL1 LINE L1 -1505 1002 882 2403 57 3 0 chr15 649425 649722 -85046032 - AluY SINE Alu -13 298 1 254 213 200 12 chr15 649745 649825 -85045929 - HAL1 LINE L1 -1823 684 590 313 311 105 16 chr15 649951 650141 -85045613 - HAL1 LINE L1 -2174 333 127 1052 129 13 0 chr15 650141 650296 -85045458 - AluSg/x SINE Alu -21 291 135 2398 58 0 0 chr15 650401 650693 -85045061 + AluY SINE Alu 2 293 -18 315 268 204 14 chr15 650735 650877 -85044877 + MIR SINE MIR 93 261 -1 672 172 35 48 chr15 653356 653501 -85042253 - MER106B DNA MER1_type -13 1046 904 1569 159 48 27 chr15 655514 655809 -85039945 - AluJo SINE Alu -11 301 1 356 272 136 68 chr15 656408 656702 -85039052 + L1MEd LINE L1 751 1064 -5055 781 227 194 33 chr15 656705 657205 -85038549 + MLT1E2 LTR MaLR 2 626 0 2068 87 27 50 chr15 657218 657517 -85038237 + AluSq SINE Alu 20 311 -2 430 219 8 62 chr15 657533 657661 -85038093 + L1MEd LINE L1 1083 1203 -4916 1203 176 210 0 chr15 658996 659234 -85036520 - AluSg1 SINE Alu -21 288 1 558 144 136 16 chr15 659248 659373 -85036381 + MER20 DNA MER1_type 80 219 0 254 219 0 16 chr15 659517 659581 -85036173 - MIR SINE MIR -30 232 170 426 225 81 38 chr15 660053 660213 -85035541 - L1MC5 LINE L1 -50 7911 7745 639 204 56 4 chr15 660590 660773 -85034981 + MER3 DNA MER1_type 6 179 -30 2062 122 31 0 chr15 661565 661853 -85033901 + AluSx SINE Alu 1 297 -15 2432 74 0 0 chr15 662534 662831 -85032923 + AluY SINE Alu 1 297 -14 210 324 0 45 chr15 662944 663055 -85032699 + CT-rich Low_complexity Low_complexity 4 109 0 2216 120 3 0 chr15 664129 664430 -85031324 - AluSg SINE Alu -6 304 3 1947 125 68 0 chr15 664590 664744 -85031010 - AluSx SINE Alu -12 300 158 1583 109 14 0 chr15 664744 664955 -85030799 - AluSg SINE Alu -85 225 12 1947 125 68 0 chr15 664955 665081 -85030673 - AluSx SINE Alu -154 158 1 902 152 0 0 chr15 665084 665216 -85030538 - FLAM_C SINE Alu -11 132 1 911 240 35 47 chr15 665621 665886 -85029868 - MER58B DNA MER1_type -2080 340 78 1699 103 117 43 chr15 665886 666168 -85029586 + AluSx SINE Alu 1 303 -9 911 240 35 47 chr15 666168 666244 -85029510 - MER58B DNA MER1_type -2342 78 3 184 289 142 51 chr15 666275 666472 -85029282 + MIR SINE MIR 21 235 -27 2177 139 0 0 chr15 666481 666790 -85028964 - AluSx SINE Alu -3 309 1 2416 96 0 0 chr15 667156 667458 -85028296 - AluSg SINE Alu -4 306 5 2102 269 91 6 chr15 667472 668250 -85027504 - L1ME1 LINE L1 -3 6163 5320 622 179 49 0 chr15 668323 668446 -85027308 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 668775 668808 -85026946 + AT_rich Low_complexity Low_complexity 1 33 0 2408 173 92 0 chr15 668808 669329 -85026425 - L1MB3 LINE L1 -8 6175 5607 2346 78 0 3 chr15 669335 669629 -85026125 - AluY SINE Alu -18 293 1 901 185 0 0 chr15 669659 669805 -85025949 - FRAM SINE Alu -13 163 18 610 225 52 6 chr15 670688 670861 -85024893 + L1ME2 LINE L1 5982 6162 -2 2226 112 3 0 chr15 670881 671177 -85024577 + AluSx SINE Alu 1 297 -15 833 173 11 62 chr15 671821 672000 -85023754 - AluSg/x SINE Alu -15 297 128 394 305 0 0 chr15 672347 672475 -85023279 + CT-rich Low_complexity Low_complexity 3 130 0 223 212 0 26 chr15 672509 672622 -85023132 + CT-rich Low_complexity Low_complexity 3 112 0 367 222 0 17 chr15 672677 672853 -85022901 + CT-rich Low_complexity Low_complexity 3 175 0 270 261 0 0 chr15 672887 673063 -85022691 + CT-rich Low_complexity Low_complexity 3 178 0 530 279 0 1 chr15 673097 674868 -85020886 + CT-rich Low_complexity Low_complexity 1 1768 0 255 324 0 0 chr15 674873 675009 -85020745 + (CTG)n Simple_repeat Simple_repeat 3 138 0 212 323 0 0 chr15 675620 675685 -85020069 - MIR SINE MIR -91 117 53 1370 101 0 0 chr15 676024 676202 -85019552 - AluSp SINE Alu 0 313 136 504 259 179 20 chr15 676335 676536 -85019218 - MIR SINE MIR -10 252 20 222 91 0 0 chr15 676730 676763 -85018991 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 192 19 0 chr15 676767 676819 -85018935 - L1MC4a LINE L1 -1871 5937 5885 274 274 60 17 chr15 678152 678269 -85017485 - L2 LINE L2 -5 3308 3187 312 314 64 29 chr15 678410 678550 -85017204 - MIR SINE MIR -70 192 48 521 134 12 0 chr15 680696 680778 -85014976 + AluS SINE Alu 5 87 -225 2203 105 3 22 chr15 681129 681443 -85014311 - AluSg SINE Alu -2 308 1 611 277 80 44 chr15 681532 681799 -85013955 - L1M4 LINE L1 -2186 3960 3704 2240 112 0 3 chr15 681799 682136 -85013618 - AluY SINE Alu 0 311 3 611 277 80 44 chr15 682136 682432 -85013322 - L1M4 LINE L1 -2442 3704 3377 248 209 55 22 chr15 682456 682547 -85013207 - L1M4 LINE L1 -2869 3277 3184 660 319 69 9 chr15 682563 682996 -85012758 - L1M4 LINE L1 -3308 2838 2380 1812 231 46 104 chr15 683030 683763 -85011991 + LTR34 LTR ERV1 1 691 -8 4131 218 23 25 chr15 683854 684879 -85010875 - L1MA9 LINE L1 -30 6282 5260 1771 180 30 0 chr15 684879 685174 -85010580 - AluJb SINE Alu -8 304 1 699 153 9 0 chr15 685200 685311 -85010443 + AluSx SINE Alu 2 113 -199 1562 123 0 0 chr15 685402 685613 -85010141 + AluSx SINE Alu 92 302 -8 593 217 56 35 chr15 685632 685775 -85009979 + LTR8 LTR ERV1 1 146 -545 977 114 15 0 chr15 685869 686001 -85009753 + AluSg/x SINE Alu 159 292 -20 2165 94 42 3 chr15 686474 686760 -85008994 + AluSp SINE Alu 1 297 -16 1124 216 64 49 chr15 686962 687351 -85008403 + MSTD LTR MaLR 2 396 0 297 350 25 2 chr15 688345 688566 -85007188 + L1ME LINE L1 4882 5110 -1036 311 291 103 29 chr15 688721 688768 -85006986 + L1ME LINE L1 5268 5310 -860 2514 75 0 0 chr15 688768 689075 -85006679 + AluY SINE Alu 1 307 -4 311 291 103 29 chr15 689075 689202 -85006552 + L1ME LINE L1 5310 5455 -715 445 244 76 8 chr15 689372 689491 -85006263 - MER3 DNA MER1_type -2 207 81 252 100 0 0 chr15 689768 689808 -85005946 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 730 173 0 0 chr15 692436 692569 -85003185 + FLAM_C SINE Alu 1 133 0 1909 134 21 54 chr15 693373 693449 -85002305 - THE1C LTR MaLR 0 375 298 2558 70 0 0 chr15 693449 693751 -85002003 + AluY SINE Alu 1 302 -9 1909 134 21 54 chr15 693751 694062 -85001692 - THE1C LTR MaLR -77 298 1 7996 110 122 43 chr15 694062 695363 -85000391 - THE1C-int LTR MaLR 0 1580 150 2308 114 0 7 chr15 695363 695670 -85000084 + AluSg SINE Alu 1 305 -5 7996 110 122 43 chr15 695670 695833 -84999921 - THE1C-int LTR MaLR -1430 150 1 2029 118 55 22 chr15 695833 696196 -84999558 - THE1C LTR MaLR 0 375 1 245 200 55 0 chr15 696264 696319 -84999435 - L1ME LINE L1 -3118 3097 3040 2207 241 47 8 chr15 696356 696999 -84998755 - L1ME LINE L1 -3151 3064 2397 517 298 63 0 chr15 696999 697157 -84998597 + MER68 LTR ERV1 395 562 0 200 226 119 48 chr15 697840 697924 -84997830 + MIR SINE MIR 61 150 -112 1962 135 7 10 chr15 698363 698660 -84997094 + AluJb SINE Alu 1 296 -16 2009 133 23 13 chr15 698672 698981 -84996773 + AluSx SINE Alu 1 312 0 2093 110 7 33 chr15 699944 700244 -84995510 + AluSx SINE Alu 13 304 -8 2440 92 0 0 chr15 701055 701360 -84994394 + AluSx SINE Alu 1 305 -7 2438 93 3 3 chr15 704191 704502 -84991252 - AluSp SINE Alu -2 311 1 312 257 44 66 chr15 704648 704784 -84990970 + L1MCa LINE L1 1932 2064 -4362 1685 150 23 19 chr15 704801 704929 -84990825 - AluJo SINE Alu -45 267 141 2497 77 0 0 chr15 704929 705226 -84990528 - AluY SINE Alu -14 297 1 1685 150 23 19 chr15 705226 705363 -84990391 - AluJo SINE Alu -171 141 1 303 271 43 0 chr15 705363 705433 -84990321 - HAL1 LINE L1 -163 2344 2272 398 247 39 55 chr15 705560 705767 -84989987 + MER21B LTR ERV1 149 353 -252 227 265 13 99 chr15 705938 706089 -84989665 + MER21A LTR ERV1 622 759 -172 1037 311 111 24 chr15 706224 706837 -84988917 - L1ME LINE L1 -4981 1224 691 2223 114 0 19 chr15 706837 707145 -84988609 + AluSq SINE Alu 1 302 -11 2135 125 20 0 chr15 707391 707696 -84988058 - AluSx SINE Alu -1 311 1 704 328 97 8 chr15 707776 708148 -84987606 - L1ME LINE L1 -5937 459 55 1151 148 12 0 chr15 708169 708338 -84987416 - AluSg/x SINE Alu -9 301 131 850 223 44 50 chr15 708341 708451 -84987303 + L1MC4a LINE L1 6300 6409 -1399 1800 173 0 33 chr15 708451 708634 -84987120 - AluJb SINE Alu -16 296 125 2264 102 3 0 chr15 708634 708928 -84986826 + AluY SINE Alu 1 295 -16 1800 173 0 33 chr15 708928 709050 -84986704 - AluJb SINE Alu -187 125 1 850 223 44 50 chr15 709050 709257 -84986497 + L1MC4a LINE L1 6409 6615 -1193 2302 141 31 6 chr15 709274 709629 -84986125 + THE1B LTR MaLR 1 364 0 1977 139 14 0 chr15 709680 709960 -84985794 + AluSx SINE Alu 3 286 -26 229 105 26 0 chr15 709961 709999 -84985755 + MLT1C LTR MaLR 34 72 -395 395 22 0 0 chr15 710346 710391 -84985363 + (TC)n Simple_repeat Simple_repeat 2 46 0 1246 121 0 12 chr15 712435 712608 -84983146 + AluSg/x SINE Alu 84 254 -56 4733 220 51 22 chr15 712608 712702 -84983052 + L1M2c LINE L1 11 101 -6688 2090 102 25 3 chr15 712702 712987 -84982767 + AluY SINE Alu 1 291 -20 4733 220 51 22 chr15 712987 714058 -84981696 + L1M2c LINE L1 101 1209 -5580 21 0 0 0 chr15 714204 714225 -84981529 + GC_rich Low_complexity Low_complexity 1 21 0 762 226 90 73 chr15 715162 715239 -84980515 + L1MEc LINE L1 1978 2052 -4344 2306 92 0 3 chr15 715239 715534 -84980220 + AluSx SINE Alu 1 294 -18 762 226 90 73 chr15 715534 715835 -84979919 + L1MEc LINE L1 2052 2370 -4026 2199 119 3 3 chr15 715835 716137 -84979617 + AluSp SINE Alu 1 302 -11 762 226 90 73 chr15 716137 716292 -84979462 + L1MEc LINE L1 2370 2521 -3875 1698 109 26 4 chr15 716317 716546 -84979208 + AluSx SINE Alu 1 234 -78 1038 117 0 0 chr15 716546 716683 -84979071 + AluSp/q SINE Alu 170 306 -7 295 288 72 7 chr15 716694 716847 -84978907 + L1MEc LINE L1 2519 2681 -3534 308 261 11 0 chr15 716979 717067 -84978687 + L1MEc LINE L1 2758 2846 -3369 684 188 0 45 chr15 717070 717224 -84978530 - MER44D DNA MER2_type 0 605 459 735 190 0 0 chr15 717224 717345 -84978409 + AluSg/x SINE Alu 154 274 -36 180 0 0 0 chr15 717366 717386 -84978368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 554 127 100 0 chr15 717386 717496 -84978258 - MER44D DNA MER2_type -138 467 347 343 185 0 0 chr15 717515 717569 -84978185 + MER44D DNA MER2_type 38 361 -248 1855 135 14 3 chr15 717591 717906 -84977848 + AluSx SINE Alu 1 318 0 338 231 0 39 chr15 717907 718011 -84977743 + L1ME3 LINE L1 97 196 -6663 * 1184 231 64 44 chr15 717981 718088 -84977666 + L1ME3 LINE L1 5605 5708 -1249 2228 120 3 0 chr15 718088 718388 -84977366 + AluSx SINE Alu 1 301 -11 1184 231 64 44 chr15 718388 718825 -84976929 + L1ME3 LINE L1 5708 6160 -797 839 188 36 80 chr15 718819 718959 -84976795 + L1ME2 LINE L1 5564 5688 -476 * 2488 87 3 0 chr15 718959 719268 -84976486 - AluSp SINE Alu -3 310 1 839 188 36 80 chr15 719268 719403 -84976351 + L1ME2 LINE L1 5688 5827 -337 1111 74 0 27 chr15 719469 719602 -84976152 + AluSg/x SINE Alu 167 297 -15 2504 87 0 3 chr15 719602 719912 -84975842 + AluY SINE Alu 1 309 -2 1111 74 0 27 chr15 719912 719927 -84975827 + AluSg/x SINE Alu 297 311 -1 536 156 44 9 chr15 719928 720040 -84975714 + L1ME3 LINE L1 6297 6407 -598 391 221 44 127 chr15 720035 720205 -84975549 + L1ME3 LINE L1 6624 6742 -231 * 2377 105 0 3 chr15 720205 720510 -84975244 + AluSx SINE Alu 1 304 -8 391 221 44 127 chr15 720510 720652 -84975102 + L1ME3 LINE L1 6742 6894 -79 485 211 8 45 chr15 720652 720785 -84974969 - MLT2C1 LTR ERVL 0 397 270 2388 90 0 10 chr15 720801 721111 -84974643 + AluSp SINE Alu 1 307 -6 1535 177 15 47 chr15 721242 721365 -84974389 + MLT1A1 LTR MaLR 38 163 -202 2692 58 0 0 chr15 721365 721674 -84974080 + AluY SINE Alu 1 309 -2 1535 177 15 47 chr15 721674 721889 -84973865 + MLT1A1 LTR MaLR 163 365 0 380 301 139 26 chr15 721891 722200 -84973554 + MLT1C LTR MaLR 72 415 -52 2492 50 0 10 chr15 722202 722500 -84973254 + AluY SINE Alu 1 295 -16 852 228 23 8 chr15 729328 729560 -84966194 - L1M3e LINE L1 -6808 681 13 2653 49 0 3 chr15 729782 730089 -84965665 + AluY SINE Alu 1 306 -5 2236 104 24 0 chr15 731204 731491 -84964263 - AluSx SINE Alu -18 294 1 1445 196 43 47 chr15 731860 732161 -84963593 - AluSx SINE Alu -12 300 1 1948 163 16 7 chr15 732441 732748 -84963006 + AluJb SINE Alu 1 310 -2 2094 143 3 0 chr15 733125 733425 -84962329 + AluSx SINE Alu 1 301 -11 1350 191 14 11 chr15 733585 733868 -84961886 - MSTB1 LTR MaLR 0 432 149 533 191 56 93 chr15 733976 734191 -84961563 - MLT1D LTR MaLR -292 213 7 * 553 256 47 21 chr15 734166 734400 -84961354 - MLT2C2 LTR ERVL -224 240 1 307 122 0 0 chr15 734402 734451 -84961303 - Ricksha DNA DNA -1703 343 295 764 169 15 0 chr15 734479 734609 -84961145 - FLAM_C SINE Alu -1 132 1 283 138 15 15 chr15 735154 735219 -84960535 + CT-rich Low_complexity Low_complexity 3 67 0 699 145 53 0 chr15 735517 735648 -84960106 + MLT1A1 LTR MaLR 228 365 0 730 264 114 25 chr15 735648 736008 -84959746 + MLT1C LTR MaLR 69 460 -7 2302 79 14 3 chr15 736037 736329 -84959425 - AluSx SINE Alu -17 295 1 3087 156 42 2 chr15 736579 737125 -84958629 - LTR24B LTR ERV1 -7 569 2 368 279 25 41 chr15 737133 737380 -84958374 + MLT2F LTR ERVL 292 614 -49 201 147 0 0 chr15 737403 737437 -84958317 + (TA)n Simple_repeat Simple_repeat 2 35 0 775 280 53 20 chr15 737489 737945 -84957809 + MLT1C-int LTR MaLR 1 606 -765 2337 90 0 0 chr15 738042 738331 -84957423 - AluSg SINE Alu -21 289 1 1325 172 121 8 chr15 738339 738462 -84957292 - AluSg SINE Alu -19 291 183 2577 73 0 13 chr15 738462 738776 -84956978 - AluSx SINE Alu 0 312 3 1325 172 121 8 chr15 738776 738908 -84956846 - AluSg SINE Alu -127 183 7 2185 123 3 7 chr15 739021 739323 -84956431 - AluSq SINE Alu -12 301 1 1090 180 60 85 chr15 739449 739765 -84955989 - L1ME1 LINE L1 -307 5859 5552 776 126 24 31 chr15 739767 739894 -84955860 + AluJo/FLAM SINE Alu 2 127 -185 1963 149 0 0 chr15 739895 740220 -84955534 + AluSx SINE Alu 1 325 0 468 117 0 0 chr15 740457 740534 -84955220 + AluS SINE Alu 229 305 -4 377 198 12 0 chr15 740544 740625 -84955129 - L1ME1 LINE L1 -598 5568 5487 * 1804 248 112 6 chr15 740623 741251 -84954503 - L1ME2 LINE L1 -54 6110 5417 1458 178 16 52 chr15 741296 741409 -84954345 + AluJb SINE Alu 1 116 -196 1939 170 0 6 chr15 741409 741721 -84954033 - AluSx SINE Alu -2 310 1 1458 178 16 52 chr15 741721 741916 -84953838 + AluJb SINE Alu 116 298 -14 397 243 195 5 chr15 742032 742114 -84953640 - L1ME2 LINE L1 -917 5229 5164 2416 94 0 0 chr15 742114 742413 -84953341 - AluSx SINE Alu -13 299 1 397 243 195 5 chr15 742413 742515 -84953239 - L1ME2 LINE L1 -982 5164 5010 2313 123 0 3 chr15 742541 742849 -84952905 - AluSg SINE Alu -3 307 1 2225 114 0 7 chr15 742967 743264 -84952490 + AluSx SINE Alu 2 296 -16 1201 155 0 0 chr15 743385 743559 -84952195 - AluJb SINE Alu -5 307 134 2228 90 17 7 chr15 743559 743848 -84951906 - AluSx SINE Alu -19 293 2 249 152 315 0 chr15 746674 746766 -84948988 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 746766 746788 -84948966 + AT_rich Low_complexity Low_complexity 1 22 0 1965 57 0 0 chr15 747749 747978 -84947776 + AluY SINE Alu 1 229 -82 1384 184 123 5 chr15 747982 748363 -84947391 + Charlie4a DNA MER1_type 83 508 0 1773 208 2 45 chr15 749273 749672 -84946082 - MER77 LTR ERV1 -4 601 220 252 315 31 47 chr15 749833 749960 -84945794 + L2 LINE L2 3146 3270 -43 2167 145 9 9 chr15 750102 750439 -84945315 + MER1B DNA MER1_type 1 337 0 2242 117 0 7 chr15 750463 750762 -84944992 - AluSx SINE Alu -10 302 6 512 233 26 11 chr15 750766 750955 -84944799 - L1M4 LINE L1 -2798 3348 3157 1762 110 141 0 chr15 750968 751231 -84944523 - AluSx SINE Alu -2 300 1 1218 159 111 4 chr15 751234 751504 -84944250 - L1MCa LINE L1 -5273 1153 855 527 286 102 79 chr15 751524 751867 -84943887 - MER77 LTR ERV1 -254 351 1 669 278 170 13 chr15 751868 752236 -84943518 + L1MC/D LINE L1 5254 5710 -2098 2144 125 0 3 chr15 752236 752531 -84943223 + AluSg SINE Alu 1 294 -16 669 278 170 13 chr15 752531 752622 -84943132 + L1MC/D LINE L1 5710 5785 -2023 993 190 49 19 chr15 753248 753547 -84942207 - MER2 DNA MER2_type -2 343 1 24 53 0 0 chr15 753643 753681 -84942073 + AT_rich Low_complexity Low_complexity 1 38 0 733 125 39 55 chr15 754052 754180 -84941574 + FLAM_C SINE Alu 2 127 -16 1969 134 7 17 chr15 754197 754496 -84941258 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr15 755193 755215 -84940539 + AT_rich Low_complexity Low_complexity 1 22 0 482 132 0 0 chr15 755232 755308 -84940446 + AluJ/FRAM SINE Alu 229 304 -8 582 139 0 0 chr15 755308 755394 -84940360 - MER2 DNA MER2_type -213 132 47 1485 273 50 7 chr15 755494 755956 -84939798 + L1M1 LINE L1 269 750 -6815 1293 149 69 40 chr15 755956 756232 -84939522 + LTR19A LTR ERV1 1 284 -202 9057 181 53 60 chr15 756234 756365 -84939389 + L1M1 LINE L1 2184 2314 -5251 416 174 0 14 chr15 756365 756461 -84939293 - AluS SINE Alu 0 309 227 9057 181 53 60 chr15 756461 757268 -84938486 + L1M1 LINE L1 2314 3125 -4440 1732 161 8 0 chr15 757268 757529 -84938225 + AluSx SINE Alu 35 297 -15 2470 81 0 0 chr15 757535 757832 -84937922 + AluY SINE Alu 1 297 -14 9057 181 53 60 chr15 757832 758329 -84937425 + L1M1 LINE L1 3130 3629 -3936 2128 127 10 10 chr15 758329 758637 -84937117 + AluSq SINE Alu 1 308 -5 9057 181 53 60 chr15 758637 759442 -84936312 + L1M1 LINE L1 3629 4438 -3127 1681 155 0 57 chr15 759442 759758 -84935996 + AluJb SINE Alu 1 298 -14 9057 181 53 60 chr15 759758 760989 -84934765 + L1M1 LINE L1 4438 5721 -1844 989 134 6 0 chr15 760989 761146 -84934608 + AluSx SINE Alu 1 158 -154 2044 131 3 0 chr15 768540 768845 -84926909 + AluSq SINE Alu 1 306 -7 273 185 0 62 chr15 768845 768920 -84926834 - L1M4 LINE L1 -1532 4614 4545 432 273 118 68 chr15 768951 769632 -84926122 - L1M4 LINE L1 -1665 4481 3767 1219 153 0 40 chr15 769660 769888 -84925866 - AluJo SINE Alu -9 303 85 260 285 105 40 chr15 769979 770207 -84925547 - L1M4 LINE L1 -2467 3679 3437 1336 195 36 20 chr15 770288 770590 -84925164 - AluJb SINE Alu -4 308 2 462 159 0 65 chr15 770971 771078 -84924676 - AluJb SINE Alu -3 309 210 1948 134 0 28 chr15 771089 771410 -84924344 - AluSx SINE Alu 0 312 1 25 75 0 0 chr15 771435 771488 -84924266 + AT_rich Low_complexity Low_complexity 1 53 0 2262 75 3 0 chr15 772212 772505 -84923249 - AluY SINE Alu -12 299 6 1850 139 7 14 chr15 772863 773158 -84922596 + AluJb SINE Alu 5 297 -15 24 32 0 0 chr15 773710 773741 -84922013 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr15 774237 774268 -84921486 + AT_rich Low_complexity Low_complexity 1 31 0 540 234 98 33 chr15 774522 774706 -84921048 - L1MC4a LINE L1 -1969 5839 5644 1481 119 155 0 chr15 774708 774959 -84920795 - AluY SINE Alu -7 304 15 289 338 89 19 chr15 774982 775195 -84920559 - L1MC4a LINE L1 -2156 5652 5425 696 239 41 82 chr15 775226 775544 -84920210 - L1MD2 LINE L1 -55 6304 6000 400 253 75 29 chr15 775582 775756 -84919998 - L1MC4a LINE L1 -2373 5435 5254 889 177 51 95 chr15 776369 776579 -84919175 + L1MB2 LINE L1 5900 6091 -80 874 146 0 0 chr15 776579 776702 -84919052 + FLAM_C SINE Alu 1 123 -10 889 177 51 95 chr15 776702 776780 -84918974 + L1MB2 LINE L1 6091 6171 0 1446 177 0 71 chr15 776790 776943 -84918811 + AluJb SINE Alu 1 122 -190 1574 81 28 0 chr15 776943 777154 -84918600 + AluSg/x SINE Alu 70 286 -24 1446 177 0 71 chr15 777154 777310 -84918444 + AluJb SINE Alu 122 288 -24 2135 100 16 13 chr15 777446 777624 -84918130 - AluSg SINE Alu 0 310 129 2176 100 0 13 chr15 777624 777934 -84917820 - AluSg SINE Alu -4 306 1 2135 100 16 13 chr15 777934 778064 -84917690 - AluSg SINE Alu -181 129 1 235 196 39 0 chr15 778170 778221 -84917533 - MER94 DNA DNA -81 53 1 2140 98 10 7 chr15 778239 778544 -84917210 - AluSc SINE Alu -2 307 2 5753 112 61 6 chr15 780600 781065 -84914689 - L1MA5A LINE L1 -2 6295 5857 213 39 0 0 chr15 781065 781091 -84914663 + (TA)n Simple_repeat Simple_repeat 2 27 0 5753 112 61 6 chr15 781091 781547 -84914207 - L1MA5A LINE L1 -440 5857 5320 2148 112 0 3 chr15 781547 781850 -84913904 - AluSq SINE Alu -11 302 1 2621 155 57 38 chr15 781850 782374 -84913380 - L1M2c LINE L1 -4886 1903 1370 481 118 0 129 chr15 782375 782411 -84913343 + AluS SINE Alu 2 41 -271 1919 145 7 0 chr15 782411 782701 -84913053 - AluSx SINE Alu -20 292 1 481 118 0 129 chr15 782701 782757 -84912997 + AluS SINE Alu 41 82 -230 290 239 23 23 chr15 782857 782945 -84912809 - L1MC4a LINE L1 -1049 5097 5010 2240 89 0 13 chr15 782971 783284 -84912470 - AluSx SINE Alu -3 309 1 700 209 7 14 chr15 783287 783426 -84912328 - AluJo SINE Alu -173 139 2 1679 176 0 0 chr15 783778 784068 -84911686 - AluJb SINE Alu -22 290 1 1766 140 25 3 chr15 784289 784574 -84911180 - AluSx SINE Alu -21 291 1 2052 115 0 0 chr15 785414 785710 -84910044 - AluSx SINE Alu -16 296 1 2130 88 7 17 chr15 785713 786010 -84909744 - AluSp SINE Alu -19 294 1 470 314 136 34 chr15 786018 786429 -84909325 - L1MC5 LINE L1 -30 7931 7479 704 136 0 0 chr15 787252 787355 -84908399 - FLAM_A SINE Alu -12 130 28 1693 166 3 25 chr15 788000 788319 -84907435 - AluJo SINE Alu 0 312 1 470 314 88 18 chr15 789275 789549 -84906205 + MARNA DNA Mariner 126 418 -168 214 193 193 18 chr15 791255 791312 -84904442 - MIR SINE MIR -33 229 163 1946 66 73 4 chr15 791495 791767 -84903987 + AluY SINE Alu 2 292 -19 220 365 51 15 chr15 791790 791927 -84903827 - L2 LINE L2 0 3313 3172 899 158 0 0 chr15 792436 792569 -84903185 - FLAM_C SINE Alu 0 133 1 232 232 136 40 chr15 792609 792635 -84903119 + MIR SINE MIR 98 120 -142 2099 93 31 0 chr15 792635 792924 -84902830 - AluSq SINE Alu -15 298 1 232 232 136 40 chr15 792924 793022 -84902732 + MIR SINE MIR 120 234 -28 322 214 111 79 chr15 793459 793585 -84902169 - L1ME4a LINE L1 -32 6089 5960 2336 65 0 0 chr15 793640 793934 -84901820 - AluY SINE Alu -17 294 1 1902 136 3 10 chr15 795068 795377 -84900377 + AluSx SINE Alu 6 312 0 365 262 107 77 chr15 795708 795876 -84899878 + L1MCa LINE L1 1902 2074 -4352 2137 82 3 20 chr15 795882 796176 -84899578 - AluSq SINE Alu -24 289 1 1634 144 27 27 chr15 796201 796500 -84899254 + AluJb SINE Alu 3 301 -11 1382 130 0 0 chr15 796609 796816 -84898938 + AluSg/x SINE Alu 102 308 -2 787 267 67 16 chr15 796831 797146 -84898608 + L1MC4 LINE L1 7177 7507 -535 610 243 76 19 chr15 800053 800263 -84895491 + Charlie5 DNA MER1_type 2359 2580 -32 1428 99 5 19 chr15 801112 801325 -84894429 - AluSc SINE Alu -99 210 1 2288 81 3 3 chr15 801335 801644 -84894110 - AluY SINE Alu -2 309 1 2201 109 0 3 chr15 801691 801993 -84893761 - AluSx SINE Alu -11 301 1 2515 43 0 0 chr15 802048 802350 -84893404 - AluY SINE Alu -9 302 1 425 310 59 34 chr15 803453 803692 -84892062 - L1M4c LINE L1 -5029 1355 1111 1998 189 26 3 chr15 803709 804091 -84891663 + L1PBa LINE L1 1 391 -6472 2226 92 3 0 chr15 804104 804409 -84891345 - AluSx SINE Alu -1 311 6 21 0 0 0 chr15 805297 805318 -84890436 + AT_rich Low_complexity Low_complexity 1 21 0 596 75 0 0 chr15 805322 805402 -84890352 - L1MA1 LINE L1 0 6302 6223 2049 109 7 16 chr15 805741 806045 -84889709 - AluSx SINE Alu -11 301 1 979 106 56 0 chr15 806501 806643 -84889111 - AluSg/x SINE Alu -18 292 143 702 147 217 7 chr15 806643 806786 -84888968 + AluSc SINE Alu 132 304 -5 265 309 73 0 chr15 807346 807469 -84888285 + L1ME LINE L1 5597 5728 -393 1627 151 14 17 chr15 808222 808513 -84887241 + AluJb SINE Alu 1 290 -22 1670 164 0 36 chr15 808525 808805 -84886949 + AluJb SINE Alu 27 296 -16 2475 97 3 0 chr15 808832 809141 -84886613 + AluSx SINE Alu 1 310 -2 207 69 0 0 chr15 809191 809220 -84886534 + (A)n Simple_repeat Simple_repeat 1 29 0 879 158 168 11 chr15 810005 810195 -84885559 - AluJo SINE Alu -5 307 88 1935 117 28 24 chr15 810716 811006 -84884748 - AluJo SINE Alu -16 296 6 2388 103 0 0 chr15 811054 811356 -84884398 + AluSg SINE Alu 1 302 -8 1928 143 4 4 chr15 815326 815605 -84880149 + AluJo SINE Alu 1 279 -33 386 293 0 15 chr15 815775 815908 -84879846 + AluSq/x SINE Alu 1 131 -171 1197 154 0 16 chr15 816291 816479 -84879275 - AluJo SINE Alu -7 305 121 677 293 129 38 chr15 816993 817221 -84878533 + L1MB8 LINE L1 2900 3106 -3040 2269 112 0 10 chr15 817221 817559 -84878195 + AluSg SINE Alu 3 310 0 677 293 129 38 chr15 817559 817665 -84878089 + L1MB8 LINE L1 3106 3201 -2945 1597 106 204 4 chr15 817665 817920 -84877834 + AluSx SINE Alu 1 306 -6 677 293 129 38 chr15 817920 818001 -84877753 + L1MB8 LINE L1 3201 3354 -2792 3556 185 58 47 chr15 818004 818165 -84877589 + L1MB8 LINE L1 4784 4942 -1236 1636 234 88 47 chr15 818165 818746 -84877008 + MER77 LTR ERV1 1 605 0 3556 185 58 47 chr15 818746 818841 -84876913 + L1MB8 LINE L1 4942 5035 -1143 2385 110 0 0 chr15 818841 819142 -84876612 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 819142 819794 -84875960 + L1MB8 LINE L1 5035 5679 -499 1988 171 10 0 chr15 819794 820103 -84875651 + AluJo SINE Alu 1 312 0 3556 185 58 47 chr15 820103 820273 -84875481 + L1MB8 LINE L1 5679 5846 -332 2209 133 0 0 chr15 820273 820574 -84875180 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 820574 820850 -84874904 + L1MB8 LINE L1 5846 6151 -27 1475 164 0 0 chr15 820921 821141 -84874613 + AluJb SINE Alu 1 220 -92 352 219 68 0 chr15 821192 821265 -84874489 + MER2 DNA MER2_type 268 345 0 265 251 190 39 chr15 821276 821555 -84874199 + L1M4 LINE L1 4553 4873 -1273 233 292 11 0 chr15 821637 821726 -84874028 + L1M4 LINE L1 5043 5132 -1014 887 169 7 0 chr15 822522 822658 -84873096 + AluJo SINE Alu 1 137 -175 903 224 42 8 chr15 822882 823145 -84872609 + L1MA4 LINE L1 6027 6298 -2 1555 167 17 43 chr15 823186 823329 -84872425 + AluJo SINE Alu 1 146 -166 2459 81 0 10 chr15 823329 823639 -84872115 + AluSq SINE Alu 1 307 -6 1555 167 17 43 chr15 823639 823795 -84871959 + AluJo SINE Alu 146 292 -20 1944 69 15 15 chr15 824276 824581 -84871173 + AluY SINE Alu 42 311 0 313 213 53 75 chr15 824840 824934 -84870820 + L1MC4a LINE L1 6085 6176 -1632 2177 112 3 16 chr15 825069 825372 -84870382 + AluSq SINE Alu 1 299 -14 2363 106 0 3 chr15 825483 825785 -84869969 + AluSc SINE Alu 1 301 -8 2595 50 0 3 chr15 825785 826085 -84869669 + AluY SINE Alu 1 299 -12 1944 62 48 140 chr15 826208 826544 -84869210 + AluY SINE Alu 1 305 -6 495 280 16 0 chr15 826599 826724 -84869030 + Tigger3(Golem) DNA MER2_type 1 127 -2902 * 2223 151 17 14 chr15 826696 827112 -84868642 + Tigger3(Golem) DNA MER2_type 2277 2693 -336 216 0 0 0 chr15 827818 827842 -84867912 + (A)n Simple_repeat Simple_repeat 1 24 0 1712 185 45 0 chr15 827915 828245 -84867509 + MER7A DNA MER2_type 1 343 -3 610 246 108 10 chr15 828506 828701 -84867053 + MER58C DNA MER1_type 2 215 0 309 317 10 0 chr15 828739 828843 -84866911 - MER63 DNA MER1_type -815 246 142 2018 135 0 14 chr15 828965 829261 -84866493 - AluJo SINE Alu -16 296 5 725 184 77 41 chr15 829313 829441 -84866313 + MER3 DNA MER1_type 1 140 -69 2725 40 0 0 chr15 829441 829745 -84866009 - AluY SINE Alu -7 304 1 725 184 77 41 chr15 829745 829812 -84865942 + MER3 DNA MER1_type 140 203 -6 2653 68 3 0 chr15 830306 830616 -84865138 - AluY SINE Alu 0 311 1 2306 90 6 22 chr15 830617 830929 -84864825 - AluSc SINE Alu -2 307 1 306 286 91 74 chr15 830929 831759 -84863995 + L1ME3A LINE L1 4323 5137 -1033 1401 183 39 10 chr15 831759 832071 -84863683 + L1MA9 LINE L1 5992 6312 0 306 286 91 74 chr15 832071 832121 -84863633 + L1ME3A LINE L1 5137 5185 -985 1296 184 131 4 chr15 832121 832388 -84863366 + AluJo SINE Alu 1 301 -1 306 286 91 74 chr15 832388 832797 -84862957 + L1ME3A LINE L1 5185 5657 -513 533 330 28 1 chr15 832808 833098 -84862656 + L1ME3A LINE L1 5700 5995 -167 294 62 0 42 chr15 833623 833671 -84862083 - MADE1 DNA Mariner -1 79 34 267 326 88 42 chr15 833669 833725 -84862029 - MER3 DNA MER1_type -6 203 151 * 2329 93 3 19 chr15 833725 834035 -84861719 - AluSx SINE Alu -7 305 1 267 326 88 42 chr15 834035 834171 -84861583 - MER3 DNA MER1_type -58 151 2 1707 177 10 13 chr15 834453 834758 -84860996 + AluJo SINE Alu 1 304 -8 1831 159 6 41 chr15 834760 835075 -84860679 + AluJo SINE Alu 9 312 0 216 0 0 0 chr15 835689 835713 -84860041 + (A)n Simple_repeat Simple_repeat 1 24 0 873 266 82 43 chr15 836367 836856 -84858898 + MLT1J LTR MaLR 4 511 0 2040 124 17 7 chr15 836890 837181 -84858573 + AluSx SINE Alu 1 294 -18 1952 147 3 33 chr15 837186 837493 -84858261 - AluJo SINE Alu -14 298 1 2472 102 0 0 chr15 840088 840393 -84855361 + AluSx SINE Alu 1 305 -7 316 303 87 84 chr15 841622 841710 -84854044 + L1ME4a LINE L1 5630 5716 -405 2344 79 3 30 chr15 841710 842015 -84853739 - AluSx SINE Alu -15 297 1 316 303 87 84 chr15 842015 842157 -84853597 + L1ME4a LINE L1 5716 5856 -265 1958 145 13 7 chr15 842157 842460 -84853294 + AluJb SINE Alu 3 307 -5 316 303 87 84 chr15 842460 842491 -84853263 + L1ME4a LINE L1 5856 5885 -236 2257 117 0 0 chr15 842491 842782 -84852972 + AluSx SINE Alu 1 291 -21 316 303 87 84 chr15 842782 842841 -84852913 + L1ME4a LINE L1 5885 5953 -168 1263 239 131 40 chr15 844469 845316 -84850438 + L1MDb LINE L1 882 1761 -4779 246 251 36 84 chr15 845826 845993 -84849761 + L1MDb LINE L1 2212 2370 -4170 650 153 0 27 chr15 846001 846112 -84849642 + FLAM_A SINE Alu 22 129 -13 747 257 77 30 chr15 846125 846651 -84849103 + L1MDb LINE L1 2356 2910 -3630 1267 239 3 7 chr15 846655 846944 -84848810 + Tigger7 DNA MER2_type 4 291 -2196 968 228 199 3 chr15 846945 847252 -84848502 + Tigger7 DNA MER2_type 2121 2487 0 1730 151 46 57 chr15 848143 848510 -84847244 + L1MB3 LINE L1 5764 6126 -57 2181 104 0 20 chr15 848510 848808 -84846946 + AluSg SINE Alu 5 296 -14 1730 151 46 57 chr15 848808 848864 -84846890 + L1MB3 LINE L1 6126 6181 -2 2564 55 7 7 chr15 849906 850215 -84845539 + AluY SINE Alu 1 309 -2 716 163 205 6 chr15 850315 850481 -84845273 + MLT1B LTR MaLR 192 390 0 2096 122 38 0 chr15 852068 852355 -84843399 + AluSx SINE Alu 1 298 -14 225 108 0 0 chr15 852613 852650 -84843104 + (TG)n Simple_repeat Simple_repeat 2 38 0 1178 52 0 0 chr15 853353 853487 -84842267 + AluY SINE Alu 1 134 -177 2532 61 0 0 chr15 853487 853781 -84841973 + AluY SINE Alu 1 294 -17 2140 104 36 0 chr15 854225 854503 -84841251 - AluSq SINE Alu -10 303 16 335 313 71 47 chr15 857060 857129 -84838625 - L1MC/D LINE L1 -2303 5505 5439 2140 102 7 3 chr15 857129 857454 -84838300 - AluSx SINE Alu 0 326 1 335 313 71 47 chr15 857454 857512 -84838242 - L1MC/D LINE L1 -2369 5439 5384 1878 166 7 7 chr15 857512 857813 -84837941 - AluJb SINE Alu -11 301 1 335 313 71 47 chr15 857813 857894 -84837860 - L1MC/D LINE L1 -2424 5384 5290 2383 98 0 16 chr15 858519 858836 -84836918 - AluSp SINE Alu -1 312 1 346 237 13 0 chr15 859180 859256 -84836498 + L1MC4 LINE L1 7782 7858 -184 1971 120 56 0 chr15 859356 859627 -84836127 + AluSp SINE Alu 1 290 -23 531 0 0 0 chr15 859627 859686 -84836068 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1971 120 56 0 chr15 859686 859698 -84836056 + AluSp SINE Alu 290 300 -13 566 176 8 8 chr15 860173 860298 -84835456 - L1MA8 LINE L1 -12 6279 6155 564 127 15 8 chr15 860402 860536 -84835218 + (CA)n Simple_repeat Simple_repeat 1 135 0 325 260 57 32 chr15 860844 860967 -84834787 - MIR3 SINE MIR -50 158 33 1187 126 16 0 chr15 860984 861164 -84834590 - L1MA7 LINE L1 -315 5976 5791 315 0 0 0 chr15 861164 861199 -84834555 + (TG)n Simple_repeat Simple_repeat 2 36 0 1939 117 0 0 chr15 861306 861553 -84834201 + AluSx SINE Alu 3 249 -63 1172 214 63 0 chr15 861555 861793 -84833961 + Tigger3(Golem) DNA MER2_type 2777 3029 0 2112 150 45 18 chr15 862031 862194 -84833560 + MLT1B LTR MaLR 1 158 -232 2263 70 3 76 chr15 862194 862522 -84833232 + AluSp SINE Alu 1 304 -9 2112 150 45 18 chr15 862522 862738 -84833016 + MLT1B LTR MaLR 158 390 0 875 120 32 0 chr15 863885 864010 -84831744 + AluJo/FLAM SINE Alu 1 129 -173 2136 104 0 0 chr15 864012 864292 -84831462 + AluSx SINE Alu 32 311 -1 2344 154 42 27 chr15 864328 864736 -84831018 + MLT2D LTR ERVL 1 414 0 788 229 62 34 chr15 865733 866059 -84829695 + L1MEc LINE L1 2179 2485 -3730 3036 203 28 83 chr15 866093 866922 -84828832 + L1M4 LINE L1 4213 4981 -1165 2333 96 0 6 chr15 866922 867235 -84828519 + AluY SINE Alu 1 311 0 3036 203 28 83 chr15 867235 867384 -84828370 + L1M4 LINE L1 4981 5137 -1009 1603 167 6 63 chr15 867384 867518 -84828236 + AluJo SINE Alu 1 141 -171 2212 114 9 19 chr15 867518 867833 -84827921 + AluSp SINE Alu 1 312 -1 1603 167 6 63 chr15 867833 868015 -84827739 + AluJo SINE Alu 141 299 -13 264 54 0 0 chr15 868018 868055 -84827699 + L1M2 LINE L1 4558 4594 -1552 2380 166 7 18 chr15 868095 868281 -84827473 + L1M2 LINE L1 4563 4750 -1396 2472 78 0 3 chr15 868281 868588 -84827166 + AluSx SINE Alu 1 306 -6 2380 166 7 18 chr15 868588 868859 -84826895 + L1M2 LINE L1 4750 5015 -1131 1744 150 32 54 chr15 868859 868989 -84826765 + AluJb SINE Alu 1 132 -180 2299 103 0 0 chr15 868989 869281 -84826473 + AluSx SINE Alu 9 300 -12 1744 150 32 54 chr15 869281 869463 -84826291 + AluJb SINE Alu 132 306 -6 347 129 7 201 chr15 869466 869605 -84826149 - L1MB8 LINE L1 -140 6038 5927 962 162 6 0 chr15 869607 869786 -84825968 - L1MA6 LINE L1 -242 6058 5879 2798 140 55 2 chr15 869799 870422 -84825332 + L1M2 LINE L1 5102 5762 -529 729 157 37 30 chr15 870427 870561 -84825193 + AluJo SINE Alu 2 136 -176 2036 127 10 10 chr15 870575 870875 -84824879 + AluSx SINE Alu 1 300 -12 382 191 0 0 chr15 870932 871000 -84824754 + Tigger2 DNA MER2_type 2 69 -2649 * 2006 151 16 13 chr15 870989 871361 -84824393 + Tigger2 DNA MER2_type 2273 2645 -73 1436 62 150 0 chr15 871400 871593 -84824161 + AluSg/x SINE Alu 85 306 -6 2072 105 7 20 chr15 871600 871894 -84823860 + AluSq SINE Alu 1 290 -23 313 213 0 0 chr15 871894 871948 -84823806 + Tigger2 DNA MER2_type 2646 2702 -16 690 248 70 47 chr15 872063 872285 -84823469 - L1M4 LINE L1 -1543 4603 4388 2524 67 0 0 chr15 872285 872583 -84823171 - AluSg SINE Alu -12 298 1 690 248 70 47 chr15 872583 872615 -84823139 - L1M4 LINE L1 -1758 4388 4358 1451 169 59 53 chr15 872615 872952 -84822802 + MER44D DNA MER2_type 1 609 0 690 248 70 47 chr15 872952 872994 -84822760 - L1M4 LINE L1 -1788 4358 4299 2498 76 3 0 chr15 873045 873348 -84822406 + AluSp SINE Alu 1 304 -9 839 213 38 0 chr15 873355 873538 -84822216 - L1M4 LINE L1 -1827 4319 4130 2356 85 0 0 chr15 873680 874006 -84821748 + AluSq SINE Alu 5 330 0 304 243 30 109 chr15 874046 874197 -84821557 + L1ME LINE L1 5658 5791 -2017 2221 128 0 3 chr15 874197 874510 -84821244 + AluSx SINE Alu 1 312 0 304 243 30 109 chr15 874510 874560 -84821194 + L1ME LINE L1 5791 5843 -1965 254 167 0 0 chr15 874886 874934 -84820820 + L1ME LINE L1 5841 5888 -278 36 82 0 0 chr15 876262 876347 -84819407 + GC_rich Low_complexity Low_complexity 1 85 0 1141 219 8 4 chr15 926490 926727 -84769027 + HERVL74 LTR ERVL 1787 2024 -3661 1700 208 46 3 chr15 926729 927056 -84768698 - MLT1A1 LTR MaLR 0 365 25 1437 249 57 73 chr15 927059 927564 -84768190 - MLT-int LTR MaLR -633 1102 606 267 31 0 0 chr15 927579 927611 -84768143 + (TTCTCC)n Simple_repeat Simple_repeat 3 34 0 527 154 0 0 chr15 927611 927689 -84768065 - FRAM SINE Alu -31 145 68 3378 230 89 89 chr15 927789 928094 -84767660 + LTR35-int LTR ERV1 1655 1959 -4769 387 0 0 0 chr15 928094 928137 -84767617 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3378 230 89 89 chr15 928137 929692 -84766062 + LTR35-int LTR ERV1 1959 3513 -3215 1527 134 25 0 chr15 929692 929930 -84765824 + L1PA15 LINE L1 5914 6157 -8 3378 230 89 89 chr15 929930 929958 -84765796 + LTR35-int LTR ERV1 3513 3540 -3188 2044 119 31 0 chr15 929958 930244 -84765510 + AluSx SINE Alu 1 295 -17 3378 230 89 89 chr15 930244 930759 -84764995 + LTR35-int LTR ERV1 3540 4567 -2161 608 81 50 20 chr15 930768 930867 -84764887 - MER41B LTR ERV1 -86 549 448 1437 136 0 5 chr15 930867 931081 -84764673 - AluSq SINE Alu -19 294 82 1027 128 7 0 chr15 931081 931229 -84764525 - MER41B LTR ERV1 -182 453 305 2727 227 42 8 chr15 931243 931905 -84763849 + LTR35-int LTR ERV1 5106 5790 -541 392 166 69 97 chr15 931925 932070 -84763684 + LTR35-int LTR ERV1 5914 6054 -277 2047 167 36 44 chr15 932496 933057 -84762697 + LTR35 LTR ERV1 1 618 0 2234 241 47 2 chr15 933059 933549 -84762205 + MSTD-int LTR MaLR 1224 1735 0 786 191 111 35 chr15 933549 933874 -84761880 + MSTD LTR MaLR 1 420 -8 618 212 109 2 chr15 934079 934249 -84761505 + MER61E LTR ERV1 342 774 -20 1007 162 133 54 chr15 934289 934530 -84761224 + MER61E-int LTR ERV1 30 289 -6707 3984 245 38 40 chr15 934630 935904 -84759850 + MER61E-int LTR ERV1 479 1749 -5247 12769 167 60 63 chr15 935913 937587 -84758167 + MER61E-int LTR ERV1 2116 3339 -3657 2241 115 0 22 chr15 937587 937901 -84757853 - AluSc SINE Alu -2 307 1 12769 167 60 63 chr15 937901 939348 -84756406 + MER61E-int LTR ERV1 3339 4789 -2207 971 176 16 21 chr15 939492 939679 -84756075 + MER61E LTR ERV1 341 526 -43 1409 325 47 16 chr15 939725 940233 -84755521 + HERVL74 LTR ERVL 414 937 -4748 228 67 0 0 chr15 940370 940400 -84755354 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 8765 156 27 20 chr15 940569 940625 -84755129 + MER61E-int LTR ERV1 2479 2533 -4463 2198 136 0 0 chr15 940625 940927 -84754827 + AluSg SINE Alu 1 302 -8 8765 156 27 20 chr15 940927 942654 -84753100 + MER61E-int LTR ERV1 2533 6993 -3 251 175 0 111 chr15 942897 942960 -84752794 + MER61E LTR ERV1 99 154 -415 2639 212 16 12 chr15 943101 943663 -84752091 - MLT1A1-int LTR MaLR -1168 567 4 1595 239 28 3 chr15 943667 944022 -84751732 - MLT1A1 LTR MaLR 0 365 2 979 270 61 0 chr15 944023 944301 -84751453 + HERVL74 LTR ERVL 3130 3424 -2261 1107 243 67 13 chr15 944312 944612 -84751142 + HERVL74 LTR ERVL 3536 3851 -1834 539 70 0 0 chr15 944880 944951 -84750803 - L1PA5 LINE L1 -209 5945 5875 1149 91 0 0 chr15 945051 945194 -84750560 - AluY SINE Alu -168 143 1 771 261 147 12 chr15 945194 945528 -84750226 - L1M4 LINE L1 -938 5208 4830 331 130 0 0 chr15 945554 945608 -84750146 - L1MA5A LINE L1 -2 6295 6242 2029 142 3 3 chr15 945608 945917 -84749837 - AluSx SINE Alu -3 309 1 1982 129 3 29 chr15 945931 946242 -84749512 - AluJb SINE Alu -9 303 1 572 116 30 2 chr15 946242 946338 -84749416 - L1MC/D LINE L1 -672 5625 5520 423 138 0 0 chr15 946393 946458 -84749296 + L1MA5A LINE L1 6183 6247 -50 771 192 8 0 chr15 946467 946597 -84749157 - AluSg/x SINE Alu -49 263 133 2175 109 0 3 chr15 946597 946911 -84748843 - AluSx SINE Alu 0 313 1 2299 82 7 0 chr15 946933 947251 -84748503 - AluSg SINE Alu 0 320 1 2064 98 47 0 chr15 947787 948062 -84747692 + AluSx SINE Alu 13 300 -12 404 234 76 21 chr15 949560 949705 -84746049 - MIR SINE MIR -109 153 1 389 287 17 17 chr15 949958 950073 -84745681 - L1ME LINE L1 -441 5680 5566 2176 117 27 3 chr15 950149 950448 -84745306 - AluSx SINE Alu -6 306 1 1879 136 3 81 chr15 950455 950656 -84745098 - AluJo SINE Alu 0 312 146 2227 101 3 7 chr15 950656 950964 -84744790 - AluSg SINE Alu -3 307 1 1879 136 3 81 chr15 950964 951094 -84744660 - AluJo SINE Alu -166 146 7 236 88 0 0 chr15 951305 951339 -84744415 - Alu SINE Alu -267 34 1 780 229 28 0 chr15 951446 951625 -84744129 + MER5A DNA MER1_type 6 189 0 2223 118 0 7 chr15 951942 952246 -84743508 - AluSg SINE Alu -8 302 1 338 213 53 0 chr15 952248 952342 -84743412 - MIR SINE MIR -147 115 17 1954 143 0 17 chr15 953348 953649 -84742105 + AluJb SINE Alu 1 296 -16 1338 147 117 57 chr15 954012 954158 -84741596 + AluJo SINE Alu 1 137 -175 2227 109 24 0 chr15 954158 954452 -84741302 + AluSg SINE Alu 1 301 -9 1338 147 117 57 chr15 954452 954570 -84741184 + AluJo SINE Alu 137 281 -31 200 83 0 28 chr15 954571 954607 -84741147 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1942 140 11 49 chr15 954717 955066 -84740688 - MER1B DNA MER1_type 0 337 2 986 188 28 0 chr15 955790 955966 -84739788 + FRAM SINE Alu 1 176 0 539 181 0 38 chr15 955975 956135 -84739619 + GA-rich Low_complexity Low_complexity 3 156 0 232 190 210 30 chr15 956418 956518 -84739236 + MLT1K LTR MaLR 125 242 -346 242 286 8 48 chr15 956677 956803 -84738951 + MLT1K LTR MaLR 457 577 -11 2321 129 0 0 chr15 957883 958194 -84737560 - AluSx SINE Alu -1 311 1 1509 169 12 0 chr15 958302 958556 -84737198 + AluJb SINE Alu 51 307 -5 1824 155 54 0 chr15 958632 958910 -84736844 + AluJo SINE Alu 3 295 -17 334 230 0 46 chr15 959001 959088 -84736666 + MLT1F1 LTR MaLR 62 144 -449 2784 84 0 0 chr15 959115 959470 -84736284 - THE1A LTR MaLR 0 355 1 445 276 125 0 chr15 959475 959627 -84736127 + MLT1F1 LTR MaLR 121 291 -276 1174 93 0 13 chr15 959628 959778 -84735976 + AluSq/x SINE Alu 2 149 -163 213 39 0 0 chr15 959800 959826 -84735928 + (A)n Simple_repeat Simple_repeat 1 26 0 864 209 141 30 chr15 959826 960089 -84735665 + MLT1F1 LTR MaLR 276 567 0 251 289 0 48 chr15 960097 960180 -84735574 - MLT1J LTR MaLR -431 80 2 542 159 23 15 chr15 960263 960395 -84735359 + CT-rich Low_complexity Low_complexity 3 135 0 833 161 23 0 chr15 960409 960539 -84735215 - FLAM_C SINE Alu 0 133 1 3216 157 11 14 chr15 960575 961137 -84734617 + LTR31 LTR ERV1 60 619 0 252 259 24 35 chr15 961144 961229 -84734525 + MIR SINE MIR 156 239 -23 221 0 35 0 chr15 961251 961280 -84734474 + (TTA)n Simple_repeat Simple_repeat 2 31 0 967 104 0 15 chr15 961280 961408 -84734346 - AluSp SINE Alu -185 128 1 2289 97 33 0 chr15 961590 961889 -84733865 - AluSx SINE Alu -1 311 3 231 287 202 0 chr15 961943 962072 -84733682 - MIR3 SINE MIR -3 205 51 1904 112 15 8 chr15 962172 962439 -84733315 + AluSx SINE Alu 33 301 -11 2329 121 0 3 chr15 963040 963353 -84732401 + AluSx SINE Alu 1 312 0 2071 122 28 0 chr15 963421 963707 -84732047 + AluSx SINE Alu 1 294 -18 1078 169 0 17 chr15 963991 964163 -84731591 + FAM SINE Alu 1 169 -6 1822 190 0 3 chr15 964225 964536 -84731218 + AluJo SINE Alu 1 310 -2 209 195 0 0 chr15 964611 964652 -84731102 + (TG)n Simple_repeat Simple_repeat 1 41 0 2409 103 0 25 chr15 964718 965038 -84730716 + AluSx SINE Alu 1 312 0 1560 39 6 0 chr15 965160 965338 -84730416 - AluY SINE Alu -132 179 1 1198 15 0 0 chr15 965376 965509 -84730245 + AluY SINE Alu 176 308 -3 2531 39 0 0 chr15 966883 967189 -84728565 - AluY SINE Alu 0 306 1 674 281 35 5 chr15 967539 967738 -84728016 + MIR SINE MIR 10 214 -48 1420 92 5 0 chr15 968102 968309 -84727445 - L1MA3 LINE L1 0 6305 6098 2408 69 0 13 chr15 968546 968852 -84726902 - AluY SINE Alu -9 302 1 27 49 0 0 chr15 969319 969360 -84726394 + AT_rich Low_complexity Low_complexity 1 41 0 2455 66 0 0 chr15 969632 969935 -84725819 - AluY SINE Alu -8 303 1 525 173 0 0 chr15 970195 970276 -84725478 + AluSg/x SINE Alu 216 296 -16 677 149 174 8 chr15 970404 970525 -84725229 + AluJo SINE Alu 2 142 -170 2093 148 0 0 chr15 970529 970820 -84724934 + AluSq SINE Alu 6 296 -17 2097 218 64 56 chr15 970911 971331 -84724423 - MER82 DNA MER2_type -3 650 235 2573 77 0 3 chr15 971331 971643 -84724111 - AluY SINE Alu 0 311 1 2134 121 10 0 chr15 971645 971935 -84723819 - AluSx SINE Alu -19 293 1 2097 218 64 56 chr15 971935 972120 -84723634 - MER82 DNA MER2_type -418 235 37 216 339 83 0 chr15 972153 972262 -84723492 - MIR3 SINE MIR -46 162 45 241 295 57 9 chr15 972588 972693 -84723061 + MIR SINE MIR 40 149 -113 2447 71 0 3 chr15 972702 972996 -84722758 - AluSc SINE Alu -16 293 1 190 222 0 0 chr15 973126 973162 -84722592 - MIR SINE MIR -59 149 114 211 252 19 107 chr15 973381 973484 -84722270 - L2 LINE L2 -1 3271 3178 1040 192 56 14 chr15 973696 973744 -84722010 + MER58A DNA MER1_type 2 47 -2373 2456 77 7 0 chr15 973744 974041 -84721713 - AluY SINE Alu -12 299 1 1040 192 56 14 chr15 974041 974206 -84721548 + MER58A DNA MER1_type 47 224 0 309 337 20 0 chr15 974208 974309 -84721445 + L2 LINE L2 3191 3293 -20 445 311 33 7 chr15 974769 974920 -84720834 + MIR SINE MIR 34 188 -74 396 269 19 31 chr15 975368 975545 -84720209 + MIR3 SINE MIR 10 183 -68 197 318 153 0 chr15 975664 975749 -84720005 - L2 LINE L2 0 3272 3175 2494 90 0 3 chr15 975839 976151 -84719603 + AluSx SINE Alu 1 311 -1 2092 107 32 0 chr15 977078 977359 -84718395 + AluSx SINE Alu 1 290 -22 495 286 0 0 chr15 977585 977697 -84718057 - MIR SINE MIR -70 192 81 408 304 122 0 chr15 977758 977906 -84717848 - MIR SINE MIR -53 209 44 1769 200 99 38 chr15 977927 978224 -84717530 - MLT1D LTR MaLR 0 505 167 2133 101 35 3 chr15 978224 978512 -84717242 + AluSx SINE Alu 1 297 -15 1769 200 99 38 chr15 978512 978690 -84717064 - MLT1D LTR MaLR -338 167 1 240 283 0 0 chr15 978690 978743 -84717011 - L2 LINE L2 -10 3262 3210 603 239 0 0 chr15 978785 978915 -84716839 - L1PB4 LINE L1 -3 6153 6024 2271 77 11 0 chr15 978941 979227 -84716527 - AluSx SINE Alu -23 289 1 2040 153 0 3 chr15 979229 979523 -84716231 - AluJb SINE Alu -18 294 2 907 160 6 12 chr15 979581 979750 -84716004 - L1PB4 LINE L1 -159 5997 5830 484 157 372 8 chr15 979750 979871 -84715883 - MER5A DNA MER1_type -8 181 17 2410 83 3 10 chr15 979873 980187 -84715567 - AluSq SINE Alu -1 312 1 335 311 0 0 chr15 980216 980306 -84715448 - MER58 DNA MER1_type -251 90 1 522 202 0 48 chr15 980308 980432 -84715322 + L2 LINE L2 3191 3308 -5 303 287 11 0 chr15 981393 981487 -84714267 - MER58 DNA MER1_type -291 95 1 1594 218 99 7 chr15 981621 982044 -84713710 - MLT1C LTR MaLR 0 467 6 1020 298 90 23 chr15 982232 982470 -84713284 + MLT1K LTR MaLR 2 223 -365 1909 122 0 57 chr15 982470 982766 -84712988 - AluSx SINE Alu -33 279 1 1020 298 90 23 chr15 982766 983048 -84712706 + MLT1K LTR MaLR 223 557 -31 1994 131 0 54 chr15 983470 983784 -84711970 + AluJo SINE Alu 1 297 -15 2197 131 13 0 chr15 984030 984336 -84711418 + AluSx SINE Alu 3 312 0 1673 175 29 4 chr15 984403 984677 -84711077 - AluJo SINE Alu -31 281 1 207 289 0 0 chr15 984830 984875 -84710879 + MIR SINE MIR 193 237 -25 1704 208 0 0 chr15 985070 985354 -84710400 - AluJb SINE Alu -28 284 1 1989 155 3 3 chr15 986151 986454 -84709300 + AluJo SINE Alu 3 305 -7 400 143 0 0 chr15 986654 986717 -84709037 - AluJ/FLAM SINE Alu -248 64 2 510 252 122 2 chr15 986718 986941 -84708813 - L1 LINE L1 -3250 2896 2645 247 176 55 33 chr15 986942 987011 -84708743 + (TATATG)n Simple_repeat Simple_repeat 4 77 -19 2092 84 0 18 chr15 987011 987286 -84708468 + AluY SINE Alu 31 300 -11 247 176 55 33 chr15 987286 987307 -84708447 + (TATATG)n Simple_repeat Simple_repeat 77 96 0 2356 71 0 49 chr15 987307 987615 -84708139 + AluY SINE Alu 1 293 -18 301 238 133 0 chr15 987617 987722 -84708032 - L1 LINE L1 -3460 2686 2568 1332 106 106 0 chr15 988692 988900 -84706854 + MER30 DNA MER1_type 1 230 0 1675 142 92 0 chr15 989883 990144 -84705610 - AluJb SINE Alu -19 293 9 908 281 128 18 chr15 991156 991445 -84704309 - L1ME2 LINE L1 -112 6052 5796 1896 162 10 3 chr15 991445 991753 -84704001 - AluJb SINE Alu 0 312 3 908 281 128 18 chr15 991753 991962 -84703792 - L1ME2 LINE L1 -368 5796 5499 2262 125 3 0 chr15 992501 992813 -84702941 - AluSp SINE Alu 0 313 1 2172 136 0 0 chr15 992833 993135 -84702619 - AluSx SINE Alu -10 302 1 208 100 0 143 chr15 993894 993964 -84701790 + (GGGTG)n Simple_repeat Simple_repeat 4 63 0 232 203 51 38 chr15 994672 994751 -84701003 + Charlie5 DNA MER1_type 45 124 -2488 * 986 255 3 10 chr15 994732 995042 -84700712 + Charlie5 DNA MER1_type 2222 2529 -83 469 169 0 12 chr15 995042 995125 -84700629 - AluJb SINE Alu -18 294 213 492 233 33 0 chr15 995222 995342 -84700412 + MIR3 SINE MIR 51 174 -34 503 62 0 25 chr15 995716 995797 -84699957 + Alu SINE Alu 232 310 -2 1544 121 159 8 chr15 996414 996671 -84699083 - AluSx SINE Alu -5 297 2 201 74 0 0 chr15 996698 996725 -84699029 + (T)n Simple_repeat Simple_repeat 1 27 0 453 306 2 4 chr15 997099 997623 -84698131 + CT-rich Low_complexity Low_complexity 1 523 0 421 299 0 0 chr15 997651 997973 -84697781 + CT-rich Low_complexity Low_complexity 1 322 0 427 294 0 22 chr15 998042 998226 -84697528 + CT-rich Low_complexity Low_complexity 1 180 0 486 314 1 17 chr15 998298 998910 -84696844 + CT-rich Low_complexity Low_complexity 1 602 0 219 317 195 0 chr15 999463 999586 -84696168 - MIR3 SINE MIR -9 199 53 1209 117 17 22 chr15 999925 1000104 -84695650 - AluSp SINE Alu 0 313 136 547 260 157 20 chr15 1000239 1000443 -84695311 - MIR SINE MIR -10 252 21 261 83 0 0 chr15 1000637 1000673 -84695081 + (CA)n Simple_repeat Simple_repeat 2 37 0 318 261 67 25 chr15 1002064 1002183 -84693571 - L2 LINE L2 -3 3310 3187 205 282 176 0 chr15 1002180 1002265 -84693489 - MIR3 SINE MIR 0 208 109 * 375 293 64 29 chr15 1002323 1002463 -84693291 - MIR SINE MIR -70 192 48 695 92 0 0 chr15 1004958 1005045 -84690709 + AluS SINE Alu 1 87 -226 2518 77 0 0 chr15 1005160 1005458 -84690296 + AluSg SINE Alu 1 298 -12 2206 107 0 13 chr15 1005708 1006016 -84689738 - AluSc SINE Alu -5 304 1 401 256 60 53 chr15 1006106 1006391 -84689363 - L1M4 LINE L1 -2186 3960 3674 2536 63 0 3 chr15 1006397 1006698 -84689056 - AluY SINE Alu -11 300 1 201 241 35 0 chr15 1006903 1006961 -84688793 + (TA)n Simple_repeat Simple_repeat 2 61 0 937 10 0 0 chr15 1007629 1007733 -84688021 - AluYa5/8 SINE Alu -3 307 204 2529 58 0 0 chr15 1007735 1008029 -84687725 - AluY SINE Alu -17 294 1 348 186 0 0 chr15 1008146 1008205 -84687549 - Tigger3(Golem) DNA MER2_type -1 3028 2970 805 176 85 0 chr15 1008241 1008394 -84687360 - FRAM SINE Alu -10 166 1 1967 138 233 2 chr15 1008396 1008830 -84686924 - Tigger3(Golem) DNA MER2_type -53 2976 2443 1853 149 11 3 chr15 1009281 1009563 -84686191 - AluJb SINE Alu -20 292 9 264 217 87 0 chr15 1009740 1009809 -84685945 - MIR SINE MIR -26 236 162 1886 163 17 0 chr15 1009809 1010109 -84685645 - AluJb SINE Alu -7 305 1 604 137 0 20 chr15 1010439 1010541 -84685213 - FLAM_A SINE Alu 0 142 43 315 49 0 0 chr15 1011061 1011102 -84684652 + (CA)n Simple_repeat Simple_repeat 1 41 0 459 255 57 14 chr15 1012238 1012379 -84683375 - MIR SINE MIR -66 196 50 1708 147 20 14 chr15 1014199 1014491 -84681263 + AluJo SINE Alu 1 294 -18 365 100 0 17 chr15 1014491 1014551 -84681203 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 3795 212 36 42 chr15 1014579 1014830 -84680924 + L1ME1 LINE L1 4947 5198 -968 2233 85 0 7 chr15 1014830 1015136 -84680618 + AluSg SINE Alu 1 304 -6 3795 212 36 42 chr15 1015136 1016114 -84679640 + L1ME1 LINE L1 5198 6161 -5 1581 100 129 30 chr15 1017704 1017975 -84677779 - AluSg SINE Alu -12 298 1 228 313 102 16 chr15 1018149 1018277 -84677477 + MIR SINE MIR 111 249 -13 2062 116 0 0 chr15 1018436 1018730 -84677024 - AluSq SINE Alu -18 295 2 200 206 0 0 chr15 1019394 1019428 -84676326 + polypyrimidine Low_complexity Low_complexity 3 36 0 24 32 0 0 chr15 1019628 1019659 -84676095 + AT_rich Low_complexity Low_complexity 1 31 0 1399 180 36 46 chr15 1019925 1020231 -84675523 - AluJo SINE Alu -9 303 1 208 233 11 111 chr15 1021950 1022040 -84673714 + L2 LINE L2 3190 3270 -2 27 0 0 0 chr15 1022614 1022641 -84673113 + AT_rich Low_complexity Low_complexity 1 27 0 1428 183 29 7 chr15 1023376 1023649 -84672105 + LTR15 LTR ERV1 209 487 -6 545 207 9 9 chr15 1023715 1023831 -84671923 + AluJb SINE Alu 2 117 -195 1514 157 3 35 chr15 1023832 1024145 -84671609 - AluSp SINE Alu -10 303 1 392 125 16 0 chr15 1024171 1024235 -84671519 + AluJb SINE Alu 52 116 -186 1534 157 9 46 chr15 1024237 1024561 -84671193 - AluSp SINE Alu -1 312 1 836 105 8 8 chr15 1024567 1024700 -84671054 - AluSp SINE Alu -180 133 1 577 179 8 8 chr15 1024728 1024845 -84670909 + FLAM_C SINE Alu 1 117 -16 1608 131 13 33 chr15 1024852 1025158 -84670596 - AluSp SINE Alu -13 300 1 1298 173 12 80 chr15 1025185 1025296 -84670458 + AluJb SINE Alu 1 118 -184 1568 149 7 23 chr15 1025296 1025604 -84670150 - AluSp SINE Alu -10 303 1 1298 173 12 80 chr15 1025604 1025816 -84669938 + AluJb SINE Alu 118 302 0 413 191 75 125 chr15 1026437 1026656 -84669098 + L1MC5 LINE L1 7609 7809 -152 2039 135 0 6 chr15 1026656 1026968 -84668786 + AluSq SINE Alu 1 310 -3 413 191 75 125 chr15 1026968 1027068 -84668686 + L1MC5 LINE L1 7809 7912 -49 433 318 112 52 chr15 1027725 1028011 -84667743 + L1ME4a LINE L1 5621 5923 -198 1657 150 7 7 chr15 1028235 1028515 -84667239 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr15 1028518 1028545 -84667209 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1306 208 0 4 chr15 1028585 1028830 -84666924 + AluJo SINE Alu 1 244 -68 43 56 0 0 chr15 1029571 1029642 -84666112 + AT_rich Low_complexity Low_complexity 1 71 0 21 36 0 0 chr15 1030099 1030127 -84665627 + AT_rich Low_complexity Low_complexity 1 28 0 261 57 0 0 chr15 1033370 1033405 -84662349 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 965 155 0 0 chr15 1034546 1034701 -84661053 - 7SLRNA srpRNA srpRNA -71 249 95 371 257 175 6 chr15 1035457 1035633 -84660121 - MIR SINE MIR -6 256 45 1720 133 0 86 chr15 1035646 1035970 -84659784 - AluSx SINE Alu -15 297 2 190 241 22 0 chr15 1036512 1036558 -84659196 - MIR SINE MIR -58 150 103 390 42 0 0 chr15 1036867 1036915 -84658839 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 222 216 39 0 chr15 1037051 1037102 -84658652 - MIR SINE MIR -61 147 95 519 302 1 21 chr15 1037439 1038220 -84657534 + CT-rich Low_complexity Low_complexity 1 765 0 533 249 0 38 chr15 1038231 1038416 -84657338 + CT-rich Low_complexity Low_complexity 1 178 0 2199 67 0 3 chr15 1038619 1038937 -84656817 + AluY SINE Alu 1 317 0 184 340 113 0 chr15 1038973 1039079 -84656675 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 1039421 1039544 -84656210 - MIR3 SINE MIR -9 199 53 2010 138 3 0 chr15 1039890 1040202 -84655552 - AluSp SINE Alu 0 313 1 528 234 188 20 chr15 1040337 1040534 -84655220 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 1042134 1042248 -84653506 - L2 LINE L2 -3 3310 3188 397 309 66 0 chr15 1042385 1042521 -84653233 - MIR SINE MIR -70 192 48 257 258 0 0 chr15 1044450 1044512 -84651242 + G-rich Low_complexity Low_complexity 4 65 0 1872 128 3 14 chr15 1045036 1045325 -84650429 + AluSx SINE Alu 1 286 -26 495 33 0 0 chr15 1045326 1045387 -84650367 + (CA)n Simple_repeat Simple_repeat 2 62 0 790 151 68 14 chr15 1045773 1045919 -84649835 + MER5A DNA MER1_type 3 156 -33 1347 182 37 15 chr15 1046664 1046933 -84648821 + AluJo SINE Alu 1 275 -37 314 255 61 36 chr15 1047042 1047303 -84648451 + L1P5 LINE L1 5174 5443 -711 2006 117 3 0 chr15 1047947 1048301 -84647453 - AluSx SINE Alu 0 355 1 691 216 96 0 chr15 1048479 1048646 -84647108 + MER5A DNA MER1_type 5 187 -2 655 296 25 37 chr15 1048876 1049197 -84646557 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 1049694 1049771 -84645983 - L1M4 LINE L1 -1310 4836 4750 2193 74 3 7 chr15 1049788 1050087 -84645667 - AluY SINE Alu -13 298 1 909 310 168 14 chr15 1050824 1051439 -84644315 - L2 LINE L2 -251 3062 2353 233 269 60 0 chr15 1051615 1051682 -84644072 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 1052300 1052688 -84643066 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 1052692 1052805 -84642949 + AluJo SINE Alu 2 105 -207 1650 138 0 47 chr15 1052805 1053123 -84642631 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 1053123 1053236 -84642518 + AluJo SINE Alu 105 220 -92 243 0 0 0 chr15 1053263 1053290 -84642464 + (TC)n Simple_repeat Simple_repeat 2 28 0 1292 187 3 27 chr15 1053290 1053584 -84642170 - AluSp SINE Alu -20 293 7 1777 96 10 83 chr15 1053596 1053909 -84641845 - AluSx SINE Alu -1 311 22 575 161 8 17 chr15 1053916 1054034 -84641720 + FLAM_C SINE Alu 1 117 -16 1498 133 13 33 chr15 1054045 1054347 -84641407 - AluSp SINE Alu -17 296 1 763 233 46 32 chr15 1054375 1054503 -84641251 + AluJo SINE Alu 1 135 -177 1825 112 0 21 chr15 1054503 1054790 -84640964 - AluSq SINE Alu -16 297 17 763 233 46 32 chr15 1054790 1054880 -84640874 + AluJo SINE Alu 135 222 -90 1214 69 11 17 chr15 1054922 1055119 -84640635 - AluSg/x SINE Alu 0 308 113 411 246 152 57 chr15 1055408 1055485 -84640269 + L1M4 LINE L1 2128 2196 -3950 1978 98 20 23 chr15 1055485 1055790 -84639964 + AluSg SINE Alu 7 310 0 411 246 152 57 chr15 1055790 1056359 -84639395 + L1M4 LINE L1 2196 2835 -3311 1375 122 77 12 chr15 1057373 1057620 -84638134 - L1PA10 LINE L1 -2 6166 5904 367 186 21 0 chr15 1057646 1057743 -84638011 + (TATATG)n Simple_repeat Simple_repeat 5 103 0 301 300 100 0 chr15 1057743 1057853 -84637901 + L1MC4 LINE L1 6583 6703 -1339 * 402 342 43 39 chr15 1057847 1058081 -84637673 + L1MC4 LINE L1 6468 6702 -1340 200 345 0 0 chr15 1058596 1058651 -84637103 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 1058870 1059179 -84636575 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 1059374 1059499 -84636255 - MER103 DNA DNA -20 146 2 830 183 61 96 chr15 1059716 1060028 -84635726 + AluYa5 SINE Alu 1 301 0 566 294 44 27 chr15 1060029 1060103 -84635651 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 1060103 1060493 -84635261 + MLT1A1 LTR MaLR 1 365 0 566 294 44 27 chr15 1060493 1060714 -84635040 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 1060726 1060845 -84634909 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 1060851 1060874 -84634880 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1541 161 68 14 chr15 1060923 1061203 -84634551 - AluJb SINE Alu -17 295 1 287 238 16 0 chr15 1061430 1061493 -84634261 - MIR SINE MIR -112 150 87 1618 174 17 37 chr15 1061708 1062006 -84633748 - AluJo SINE Alu -20 292 1 232 275 25 0 chr15 1062017 1062097 -84633657 - L1MC4 LINE L1 -1352 6690 6609 905 220 30 56 chr15 1062261 1062565 -84633189 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 1062738 1062774 -84632980 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 471 148 0 0 chr15 1062774 1062862 -84632892 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 2116 131 3 6 chr15 1063336 1063649 -84632105 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 1063739 1063795 -84631959 + MER3 DNA MER1_type 1 56 -153 803 207 53 0 chr15 1063806 1063975 -84631779 + AluJb SINE Alu 133 310 -2 307 290 106 68 chr15 1063975 1064182 -84631572 + L1MEd LINE L1 931 1145 -4974 2100 117 0 0 chr15 1064219 1064528 -84631226 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 1064837 1064891 -84630863 + (CA)n Simple_repeat Simple_repeat 2 54 0 367 271 57 62 chr15 1067066 1067258 -84628496 + MIR SINE MIR 2 192 -70 291 296 156 7 chr15 1068200 1068335 -84627419 + MIR3 SINE MIR 31 185 -23 338 246 76 25 chr15 1068354 1068472 -84627282 + L2 LINE L2 3146 3269 -3 494 231 141 40 chr15 1070071 1070281 -84625473 + MIR SINE MIR 16 252 -10 220 216 39 0 chr15 1071256 1071307 -84624447 + MIR SINE MIR 95 147 -61 240 35 0 0 chr15 1071444 1071473 -84624281 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 187 268 0 0 chr15 1071808 1071849 -84623905 + MIR SINE MIR 110 150 -58 1861 127 0 86 chr15 1072388 1072712 -84623042 + AluSx SINE Alu 2 297 -15 374 226 144 15 chr15 1072725 1072885 -84622869 + MIR SINE MIR 45 231 -31 968 174 0 0 chr15 1073657 1073812 -84621942 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 1078729 1078754 -84617000 + AT_rich Low_complexity Low_complexity 1 25 0 1520 191 0 0 chr15 1079324 1079570 -84616184 - AluJo SINE Alu -66 246 1 1961 149 10 0 chr15 1079613 1079914 -84615840 - AluSx SINE Alu -8 304 1 237 339 16 8 chr15 1081247 1081374 -84614380 - L2 LINE L2 -2375 939 812 211 262 262 21 chr15 1081598 1081743 -84614011 + MIR SINE MIR 53 232 -30 1752 115 11 11 chr15 1084390 1084650 -84611104 - THE1C LTR MaLR 0 375 116 26 0 0 0 chr15 1084659 1084685 -84611069 + AT_rich Low_complexity Low_complexity 1 26 0 1052 186 67 0 chr15 1084710 1084903 -84610851 - MER2 DNA MER2_type -139 206 1 2614 49 0 7 chr15 1086494 1086799 -84608955 - AluY SINE Alu -6 305 3 2218 66 3 24 chr15 1087008 1087325 -84608429 - AluY SINE Alu 0 311 1 446 314 115 57 chr15 1087606 1088164 -84607590 + L2 LINE L2 1602 2191 -1123 647 200 123 0 chr15 1088262 1088417 -84607337 + MER58B DNA MER1_type 167 340 -1 302 254 109 52 chr15 1088982 1089175 -84606579 - L1MC4a LINE L1 -1932 5876 5673 28 0 0 0 chr15 1089459 1089487 -84606267 + AT_rich Low_complexity Low_complexity 1 28 0 1914 257 89 6 chr15 1090172 1090803 -84604951 + L1 LINE L1 2046 2726 -3420 662 212 155 21 chr15 1090843 1090958 -84604796 + AluJb SINE Alu 2 100 -212 1521 139 56 21 chr15 1090958 1091126 -84604628 - AluSp SINE Alu -5 298 114 270 0 0 0 chr15 1091126 1091156 -84604598 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1521 139 56 21 chr15 1091156 1091274 -84604480 - AluSp SINE Alu -189 114 2 662 212 155 21 chr15 1091274 1091351 -84604403 + AluJb SINE Alu 100 220 -92 1292 142 88 61 chr15 1091382 1091678 -84604076 - AluSp SINE Alu -9 304 1 904 260 94 76 chr15 1092398 1092621 -84603133 - L1ME3A LINE L1 -6 6164 5946 2160 96 3 7 chr15 1092621 1092914 -84602840 - AluSc SINE Alu -17 292 1 904 260 94 76 chr15 1092914 1093263 -84602491 - L1ME3A LINE L1 -224 5946 5576 2482 48 3 35 chr15 1093263 1093573 -84602181 + AluY SINE Alu 1 300 -11 904 260 94 76 chr15 1093573 1093683 -84602071 - L1ME3A LINE L1 -594 5576 5469 1845 234 68 12 chr15 1093688 1094171 -84601583 - MLT2B1 LTR ERVL -10 510 1 2813 233 46 25 chr15 1094174 1095069 -84600685 - ERVL LTR ERVL -3 5651 4773 1562 226 122 88 chr15 1095104 1095824 -84599930 - LTR1B LTR ERV1 -81 745 1 18794 201 34 18 chr15 1095824 1097924 -84597830 - ERVL LTR ERVL -949 4815 2623 1225 167 14 14 chr15 1097924 1098134 -84597620 + MER6B DNA MER2_type 1 210 0 18794 201 34 18 chr15 1098134 1099791 -84595963 - ERVL LTR ERVL -3141 2623 995 367 214 51 31 chr15 1099792 1099858 -84595896 + MER4-int LTR ERV1 351 421 -7699 314 61 20 0 chr15 1099858 1099907 -84595847 + (TG)n Simple_repeat Simple_repeat 1 50 0 367 214 51 31 chr15 1099907 1099938 -84595816 + MER4-int LTR ERV1 421 450 -7670 6925 153 58 35 chr15 1100011 1101392 -84594362 + MER4-int LTR ERV1 451 1863 -6257 815 182 25 106 chr15 1101407 1101597 -84594157 + MER4-int LTR ERV1 2346 2550 -4048 2433 64 0 0 chr15 1101597 1101894 -84593860 - AluY SINE Alu -14 297 1 815 182 25 106 chr15 1101894 1102072 -84593682 + MER4-int LTR ERV1 2550 3710 -2888 1893 150 40 52 chr15 1102082 1102429 -84593325 + MER61A LTR ERV1 1 343 0 263 245 41 31 chr15 1102431 1102529 -84593225 + MER61A-int LTR ERV1 3 101 -5116 1409 118 78 108 chr15 1102749 1102907 -84592847 + MER61A-int LTR ERV1 246 390 -4827 2391 76 0 19 chr15 1102907 1103224 -84592530 - AluY SINE Alu 0 311 1 1409 118 78 108 chr15 1103224 1103397 -84592357 + MER61A-int LTR ERV1 390 567 -4650 * 4325 88 13 8 chr15 1103377 1104001 -84591753 + MER61A-int LTR ERV1 1396 2022 -3195 * 7842 72 18 4 chr15 1103990 1105017 -84590737 + MER61A-int LTR ERV1 2948 3988 -1229 1710 227 25 19 chr15 1105017 1105502 -84590252 - L1 LINE L1 -2441 3705 3218 2762 188 69 21 chr15 1105502 1105581 -84590173 + MER4-int LTR ERV1 4962 5036 -3084 2344 87 0 7 chr15 1105581 1105880 -84589874 - AluSg SINE Alu -13 297 1 2762 188 69 21 chr15 1105880 1106427 -84589327 + MER4-int LTR ERV1 5036 5618 -2502 2559 71 0 0 chr15 1106436 1106747 -84589007 - AluY SINE Alu 0 311 1 3404 175 38 12 chr15 1106754 1107353 -84588401 + MER4-int LTR ERV1 3116 3730 -3028 256 184 0 0 chr15 1107347 1107396 -84588358 + MER4-int LTR ERV1 1114 1162 -5436 * 279 233 27 0 chr15 1107397 1107470 -84588284 + (TA)n Simple_repeat Simple_repeat 1 75 0 4535 157 104 68 chr15 1107475 1108455 -84587299 + MER4-int LTR ERV1 6631 7645 -475 235 143 0 71 chr15 1108455 1108497 -84587257 + LOR1b LTR ERV1 395 433 -28 1135 277 58 27 chr15 1108498 1108674 -84587080 - HERVL-B1 LTR ERVL -5185 469 300 1859 149 5 115 chr15 1108674 1109064 -84586690 - MER7A DNA MER2_type -1 345 1 1135 277 58 27 chr15 1109064 1109338 -84586416 - HERVL-B1 LTR ERVL -5354 300 5 231 118 0 0 chr15 1109338 1109372 -84586382 - MLT2B1 LTR ERVL -6 514 481 571 66 0 22 chr15 1109372 1109463 -84586291 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 967 252 110 3 chr15 1109465 1109782 -84585972 - MLT2B1 LTR ERVL -169 351 1 307 245 24 0 chr15 1109785 1109913 -84585841 - L1ME LINE L1 -688 5474 5341 377 274 111 8 chr15 1109928 1110162 -84585592 - L1ME LINE L1 -846 5300 5043 1578 235 70 56 chr15 1110415 1110754 -84585000 + L1MEc LINE L1 2172 2505 -3710 2938 32 3 12 chr15 1110754 1111093 -84584661 - L1PA4 LINE L1 0 6155 5820 1578 235 70 56 chr15 1111093 1111512 -84584242 + L1MEc LINE L1 2505 2894 -3321 518 206 20 0 chr15 1111665 1111767 -84583987 - AluSp SINE Alu -78 235 132 1703 172 17 7 chr15 1111771 1112068 -84583686 + LTR15 LTR ERV1 188 487 -6 775 184 18 79 chr15 1112134 1112253 -84583501 + AluJb SINE Alu 2 102 -210 1563 165 0 29 chr15 1112253 1112562 -84583192 - AluSp SINE Alu -13 300 1 775 184 18 79 chr15 1112562 1112670 -84583084 + AluJb SINE Alu 102 215 -97 260 88 0 0 chr15 1112673 1112707 -84583047 + AluJb SINE Alu 84 117 -185 697 150 0 25 chr15 1112726 1112846 -84582908 - AluSp SINE Alu -194 119 3 595 162 45 0 chr15 1112877 1112988 -84582766 + AluJb SINE Alu 2 117 -195 22 0 0 0 chr15 1113093 1113115 -84582639 + AT_rich Low_complexity Low_complexity 1 22 0 1834 104 8 0 chr15 1113115 1113375 -84582379 + AluSq SINE Alu 36 297 -16 1633 240 112 14 chr15 1114510 1115026 -84580728 + L1ME3 LINE L1 5489 6055 -107 800 187 58 0 chr15 1115026 1115181 -84580573 + AluJo SINE Alu 1 164 -148 1763 133 0 73 chr15 1115403 1115733 -84580021 + AluSg SINE Alu 1 306 -4 330 322 17 8 chr15 1116795 1116913 -84578841 + GA-rich Low_complexity Low_complexity 3 121 0 2045 81 0 37 chr15 1117363 1117661 -84578093 - AluY SINE Alu -24 287 1 287 307 0 11 chr15 1117823 1117911 -84577843 + CT-rich Low_complexity Low_complexity 4 90 0 2292 155 52 2 chr15 1118148 1118554 -84577200 + MSTB LTR MaLR 1 426 0 489 100 0 67 chr15 1119212 1119302 -84576452 - L1PA8 LINE L1 -6 6166 6083 1660 229 9 6 chr15 1119463 1119812 -84575942 - MLT1A1 LTR MaLR -15 350 1 22 0 0 0 chr15 1120128 1120150 -84575604 + AT_rich Low_complexity Low_complexity 1 22 0 2501 43 0 3 chr15 1120223 1120525 -84575229 - AluY SINE Alu -10 301 1 293 85 6 0 chr15 1121082 1121131 -84574623 - MLT2C1 LTR ERVL -4 410 349 24 0 0 0 chr15 1121447 1121471 -84574283 + AT_rich Low_complexity Low_complexity 1 24 0 780 252 25 3 chr15 1121665 1121900 -84573854 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 1121900 1122032 -84573722 + GA-rich Low_complexity Low_complexity 4 139 0 599 184 94 80 chr15 1122088 1122200 -84573554 + L1MC4 LINE L1 7593 7711 -331 2180 65 0 45 chr15 1122200 1122509 -84573245 - AluY SINE Alu -16 295 1 599 184 94 80 chr15 1122509 1122597 -84573157 + L1MC4 LINE L1 7711 7796 -246 208 143 0 0 chr15 1122645 1122680 -84573074 + (TA)n Simple_repeat Simple_repeat 1 35 0 944 190 22 66 chr15 1122715 1122941 -84572813 - MER20 DNA MER1_type 0 219 4 753 316 35 11 chr15 1122982 1123358 -84572396 + L1MEc LINE L1 1601 1985 -4411 1448 192 66 10 chr15 1123376 1123678 -84572076 - L1MC1 LINE L1 0 6333 6015 735 302 7 7 chr15 1124019 1124307 -84571447 + L1MEc LINE L1 2209 2496 -3719 1253 260 51 8 chr15 1124410 1124917 -84570837 + L1MEc LINE L1 2506 3034 -3181 * 2974 116 57 116 chr15 1124897 1125026 -84570728 + L1MA5A LINE L1 5658 5793 -504 1694 128 79 0 chr15 1125026 1125292 -84570462 + AluSx SINE Alu 1 287 -25 2974 116 57 116 chr15 1125292 1125842 -84569912 + L1MA5A LINE L1 5793 6297 0 782 285 253 5 chr15 1125844 1126279 -84569475 + L1MEc LINE L1 3000 3542 -2673 317 200 14 0 chr15 1126279 1126349 -84569405 - L1 LINE L1 -2743 3403 3333 716 209 11 6 chr15 1126355 1126532 -84569222 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 1129940 1129962 -84565792 + GC_rich Low_complexity Low_complexity 1 22 0 1716 213 30 26 chr15 1130318 1130750 -84565004 + L1 LINE L1 3062 3498 -2648 2124 71 0 45 chr15 1130750 1131060 -84564694 + AluY SINE Alu 1 296 -15 1716 213 30 26 chr15 1131060 1131135 -84564619 + L1 LINE L1 3498 3571 -2575 822 151 27 27 chr15 1131150 1131296 -84564458 - AluJo SINE Alu -115 197 52 1954 127 3 0 chr15 1131397 1131689 -84564065 - AluSx SINE Alu -19 293 1 2036 132 0 0 chr15 1132063 1132373 -84563381 - AluSg SINE Alu 0 310 1 2185 258 96 10 chr15 1132378 1133158 -84562596 - L1ME1 LINE L1 0 6166 5320 2048 172 120 2 chr15 1133231 1133656 -84562098 - LTR53 LTR ERVL -40 479 5 604 209 16 44 chr15 1133701 1133883 -84561871 - L1MDa LINE L1 -4821 1719 1543 413 212 117 51 chr15 1133887 1134024 -84561730 + MER21B LTR ERV1 661 806 -57 2050 129 3 3 chr15 1134594 1134905 -84560849 - AluY SINE Alu 0 311 1 860 276 126 39 chr15 1137446 1137740 -84558014 - L1ME2 LINE L1 -112 6052 5785 1699 163 13 3 chr15 1137740 1138047 -84557707 - AluJo SINE Alu 0 312 3 860 276 126 39 chr15 1138047 1138259 -84557495 - L1ME2 LINE L1 -379 5785 5502 2027 139 3 0 chr15 1138794 1139103 -84556651 - AluSp SINE Alu -3 310 1 2132 124 0 0 chr15 1139126 1139433 -84556321 - AluSx SINE Alu -5 307 1 254 115 0 138 chr15 1140195 1140282 -84555472 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 1140943 1141057 -84554697 + Charlie5 DNA MER1_type 1 116 -2496 * 1117 232 3 10 chr15 1141052 1141362 -84554392 + Charlie5 DNA MER1_type 2222 2529 -83 1836 121 3 70 chr15 1141362 1141677 -84554077 - AluSx SINE Alu -18 294 1 189 0 0 0 chr15 1141721 1141742 -84554012 + (T)n Simple_repeat Simple_repeat 1 21 0 1909 141 0 3 chr15 1141785 1142068 -84553686 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 1142753 1142783 -84552971 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 1143275 1143326 -84552428 - Alu SINE Alu -249 52 2 2082 125 3 0 chr15 1143546 1143850 -84551904 - AluSx SINE Alu -7 305 1 275 239 119 15 chr15 1145371 1145505 -84550249 + MIR SINE MIR 21 168 -94 391 287 167 7 chr15 1145536 1145686 -84550068 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 1146531 1146656 -84549098 + MIR3 SINE MIR 42 174 -34 235 361 28 21 chr15 1147871 1148015 -84547739 + L2 LINE L2 2250 2394 -920 324 309 59 59 chr15 1148863 1149067 -84546687 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 1150214 1150390 -84545364 + L1ME2 LINE L1 5982 6163 -1 1663 146 49 14 chr15 1150410 1150698 -84545056 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 1151326 1151590 -84544164 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 1151603 1151630 -84544124 + AT_rich Low_complexity Low_complexity 1 27 0 3684 161 19 9 chr15 1152507 1152770 -84542984 + L1PB4 LINE L1 5502 5761 -395 396 0 0 0 chr15 1152770 1152814 -84542940 + (TA)n Simple_repeat Simple_repeat 2 45 0 3684 161 19 9 chr15 1152814 1153197 -84542557 + L1PB4 LINE L1 5761 6154 -2 1263 231 77 12 chr15 1153202 1153631 -84542123 + L1ME1 LINE L1 4362 4818 -1328 746 223 58 22 chr15 1153644 1153918 -84541836 + L1ME1 LINE L1 4995 5278 -868 804 168 6 56 chr15 1153945 1154106 -84541648 + FRAM SINE Alu 12 164 -12 1353 279 164 14 chr15 1154125 1154834 -84540920 + L1ME1 LINE L1 5345 6159 -7 703 332 56 23 chr15 1154865 1155296 -84540458 + L1M3c LINE L1 1 445 -5696 1529 256 50 30 chr15 1155492 1155652 -84540102 - LTR49-int LTR ERV1 -2401 2722 2567 2549 33 0 0 chr15 1155652 1155953 -84539801 - AluY SINE Alu -10 301 1 1529 256 50 30 chr15 1155953 1156316 -84539438 - LTR49-int LTR ERV1 -2556 2567 2189 2388 220 51 65 chr15 1156324 1157160 -84538594 - LTR49-int LTR ERV1 -1992 3297 2344 1910 104 0 0 chr15 1157160 1157420 -84538334 + AluSx SINE Alu 44 303 -9 2388 220 51 65 chr15 1157420 1157505 -84538249 - LTR49-int LTR ERV1 -2945 2344 2259 983 238 95 53 chr15 1157506 1158044 -84537710 - LTR49-int LTR ERV1 -3571 2375 1861 2052 62 7 56 chr15 1158044 1158380 -84537374 - AluY SINE Alu 0 311 1 983 238 95 53 chr15 1158380 1158533 -84537221 - LTR49-int LTR ERV1 -4085 1861 998 738 148 0 8 chr15 1158701 1158829 -84536925 - AluSp SINE Alu -180 133 7 332 167 15 0 chr15 1158860 1158926 -84536828 + AluJb SINE Alu 51 117 -185 1441 163 19 47 chr15 1158927 1159246 -84536508 - AluSp SINE Alu -3 310 1 844 85 15 0 chr15 1159252 1159382 -84536372 - AluSp SINE Alu -180 133 2 542 197 8 8 chr15 1159411 1159528 -84536226 + FLAM_C SINE Alu 1 117 -16 1645 138 10 39 chr15 1159541 1159846 -84535908 - AluSp SINE Alu -17 296 1 1275 175 12 86 chr15 1159873 1159984 -84535770 + AluJb SINE Alu 1 119 -183 1359 166 42 0 chr15 1159984 1160147 -84535607 - AluSp SINE Alu -17 296 114 324 0 0 0 chr15 1160147 1160183 -84535571 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1359 166 42 0 chr15 1160183 1160303 -84535451 - AluSp SINE Alu -199 114 1 1275 175 12 86 chr15 1160303 1160517 -84535237 + AluJb SINE Alu 119 302 0 185 250 143 0 chr15 1160782 1160838 -84534916 - MIR SINE MIR -93 169 106 277 216 76 124 chr15 1161103 1161373 -84534381 + L1MC5 LINE L1 7563 7845 -116 2061 110 0 0 chr15 1161373 1161655 -84534099 + AluSq SINE Alu 1 282 -31 203 79 26 0 chr15 1161659 1161697 -84534057 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 277 216 76 124 chr15 1161697 1161791 -84533963 + L1MC5 LINE L1 7848 7914 -47 1609 121 9 0 chr15 1361902 1362133 -84333621 + AluSg/x SINE Alu 66 298 -12 234 0 0 0 chr15 1362302 1362328 -84333426 + (A)n Simple_repeat Simple_repeat 1 26 0 22 43 0 21 chr15 1362587 1362608 -84333146 + AT_rich Low_complexity Low_complexity 1 21 -25 1657 157 51 0 chr15 1362608 1362882 -84332872 - AluJb SINE Alu -24 288 1 22 43 0 21 chr15 1362882 1362907 -84332847 + AT_rich Low_complexity Low_complexity 21 46 0 948 162 7 0 chr15 1362915 1363069 -84332685 - AluJo SINE Alu -74 238 84 1668 135 0 0 chr15 1363473 1363725 -84332029 + AluSq SINE Alu 58 309 -4 1942 93 21 11 chr15 1363861 1364178 -84331576 + AluSq SINE Alu 1 320 0 2412 53 0 3 chr15 1364402 1364702 -84331052 - AluY SINE Alu -12 299 1 2434 66 0 0 chr15 1365110 1365412 -84330342 - AluY SINE Alu -9 302 1 904 155 0 26 chr15 1365421 1365576 -84330178 - FRAM SINE Alu -23 153 3 1670 169 3 13 chr15 1365688 1365996 -84329758 - AluJo SINE Alu -7 305 1 2053 102 40 7 chr15 1366010 1366313 -84329441 - AluSq SINE Alu 0 313 1 2093 118 0 3 chr15 1366617 1366913 -84328841 - AluSg SINE Alu -15 295 1 1680 177 0 10 chr15 1366913 1367212 -84328542 - AluJb SINE Alu -14 298 3 307 73 24 0 chr15 1367258 1367299 -84328455 + 5S rRNA rRNA 1 42 -79 713 205 8 0 chr15 1367358 1367480 -84328274 + FLAM_A SINE Alu 1 123 -10 196 293 17 0 chr15 1368226 1368284 -84327470 + MIR3 SINE MIR 15 73 -135 2013 140 0 0 chr15 1368310 1368610 -84327144 - AluSx SINE Alu -12 300 1 993 80 0 15 chr15 1368610 1368747 -84327007 - AluSq/x SINE Alu -177 135 1 1155 145 199 12 chr15 1369153 1369394 -84326360 - AluSg1 SINE Alu -23 286 1 1945 155 0 0 chr15 1369400 1369697 -84326057 - AluSq SINE Alu -12 301 5 513 177 0 0 chr15 1369789 1369868 -84325886 + AluJ/FLAM SINE Alu 13 91 -221 1152 165 5 9 chr15 1370053 1370265 -84325489 - AluJb SINE Alu -10 302 92 1210 113 62 5 chr15 1370403 1370598 -84325156 + AluSg/x SINE Alu 90 295 -15 2497 166 110 25 chr15 1371070 1371589 -84324165 + LTR6A LTR ERV1 2 564 0 1344 224 0 10 chr15 1371609 1371922 -84323832 - AluJo SINE Alu -2 310 1 702 236 208 48 chr15 1371973 1372213 -84323541 - L2 LINE L2 -5 3308 3108 2127 108 10 0 chr15 1372213 1372510 -84323244 - AluSx SINE Alu -12 300 1 702 236 208 48 chr15 1372510 1372791 -84322963 - L2 LINE L2 -205 3108 2709 492 194 19 0 chr15 1372837 1372940 -84322814 + MIR SINE MIR 93 197 -65 327 236 146 0 chr15 1372966 1373076 -84322678 - L2 LINE L2 -721 2593 2468 752 151 0 0 chr15 1373080 1373199 -84322555 + FLAM_C SINE Alu 6 124 -19 1520 178 16 16 chr15 1373214 1373523 -84322231 + AluJo SINE Alu 1 309 -3 186 250 0 0 chr15 1373555 1373611 -84322143 + GA-rich Low_complexity Low_complexity 1 56 0 710 120 4 58 chr15 1373635 1373902 -84321852 + (GGGGA)n Simple_repeat Simple_repeat 1 252 0 530 243 91 100 chr15 1374047 1374274 -84321480 + L1M4 LINE L1 4156 4381 -1765 1869 154 0 13 chr15 1374274 1374586 -84321168 + AluSx SINE Alu 1 308 -4 530 243 91 100 chr15 1374586 1374687 -84321067 + L1M4 LINE L1 4381 4481 -1665 836 191 25 0 chr15 1374720 1374882 -84320872 - AluJb SINE Alu -10 302 137 2091 128 0 0 chr15 1374909 1375221 -84320533 + AluSx SINE Alu 1 312 0 2069 117 17 0 chr15 1375609 1375899 -84319855 + AluSq SINE Alu 1 295 -18 756 158 0 43 chr15 1376081 1376220 -84319534 + FLAM_C SINE Alu 1 133 0 1864 122 0 78 chr15 1376245 1376374 -84319380 + AluSx SINE Alu 7 144 -168 2018 109 3 0 chr15 1376374 1376658 -84319096 + AluSg1 SINE Alu 1 285 -24 1864 122 0 78 chr15 1376658 1376849 -84318905 + AluSx SINE Alu 144 302 -10 687 171 0 17 chr15 1376858 1376975 -84318779 - FLAM_C SINE Alu -16 117 3 2049 97 47 3 chr15 1377271 1377571 -84318183 + AluSq SINE Alu 1 313 0 1674 167 3 37 chr15 1377672 1377807 -84317947 + AluJb SINE Alu 1 139 -173 2272 90 3 0 chr15 1377807 1378108 -84317646 + AluSp SINE Alu 1 302 -11 1674 167 3 37 chr15 1378108 1378295 -84317459 + AluJb SINE Alu 139 312 0 1014 129 29 12 chr15 1378825 1378996 -84316758 - AluSq SINE Alu -6 307 134 1867 133 0 23 chr15 1378996 1379297 -84316457 - AluSx SINE Alu -18 294 1 337 113 0 0 chr15 1379297 1379350 -84316404 + MADE1 DNA Mariner 28 80 0 1083 128 0 0 chr15 1379852 1380008 -84315746 - FRAM SINE Alu -10 166 11 1663 146 26 42 chr15 1380432 1380740 -84315014 - AluSx SINE Alu -9 303 1 2110 119 3 3 chr15 1381700 1382012 -84313742 + AluSx SINE Alu 1 312 0 2416 68 7 0 chr15 1382060 1382369 -84313385 + AluY SINE Alu 1 311 0 2106 96 0 10 chr15 1382709 1383021 -84312733 + AluSg SINE Alu 1 310 0 1244 97 0 0 chr15 1383562 1383727 -84312027 - AluSc SINE Alu -13 296 132 2198 98 0 3 chr15 1383727 1384032 -84311722 - AluY SINE Alu -7 304 1 253 341 30 15 chr15 1385355 1385487 -84310267 - MIR SINE MIR -126 136 3 294 339 105 0 chr15 1386275 1386399 -84309355 + MIR SINE MIR 48 184 -78 319 244 25 59 chr15 1386714 1386833 -84308921 + MLT2C1 LTR ERVL 2 116 -281 245 323 30 0 chr15 1386850 1386949 -84308805 + MLT2C1 LTR ERVL 237 338 -59 341 182 0 0 chr15 1386961 1387027 -84308727 + MER72 LTR ERV1 1 66 -656 2414 230 68 12 chr15 1387450 1388036 -84307718 + MER82 DNA MER2_type 34 652 -1 1268 211 187 44 chr15 1388163 1388618 -84307136 - MLT2B1 LTR ERVL 0 520 1 345 314 71 59 chr15 1388887 1389142 -84306612 - MIR SINE MIR -3 259 2 185 387 28 35 chr15 1389885 1390027 -84305727 + L2 LINE L2 2746 2886 -428 1934 128 3 10 chr15 1390386 1390684 -84305070 - AluSx SINE Alu -12 300 5 378 0 0 0 chr15 1390991 1391033 -84304721 + (TG)n Simple_repeat Simple_repeat 1 42 0 270 193 59 30 chr15 1391069 1391204 -84304550 + (TG)n Simple_repeat Simple_repeat 1 139 0 207 0 0 0 chr15 1391218 1391241 -84304513 + (TG)n Simple_repeat Simple_repeat 1 23 0 229 85 0 43 chr15 1391241 1391288 -84304466 + (GA)n Simple_repeat Simple_repeat 2 46 0 525 281 0 16 chr15 1391871 1391999 -84303755 - L2 LINE L2 0 3313 3188 7313 44 3 0 chr15 1393612 1394763 -84300991 + L1PA3 LINE L1 4984 6137 -18 4411 224 57 46 chr15 1394865 1396291 -84299463 - L1MDa LINE L1 -2364 4176 2767 1995 110 28 7 chr15 1396291 1396582 -84299172 - AluSq SINE Alu -16 297 1 4411 224 57 46 chr15 1396582 1397015 -84298739 - L1MDa LINE L1 -3773 2767 2340 1617 161 83 9 chr15 1397015 1397351 -84298403 + MER46B DNA MER2_type 1 236 0 4411 224 57 46 chr15 1397351 1398160 -84297594 - L1MDa LINE L1 -4200 2340 1483 192 40 0 0 chr15 1398160 1398185 -84297569 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 390 134 0 0 chr15 1398207 1398274 -84297480 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1729 149 4 0 chr15 1398276 1398551 -84297203 - AluSg SINE Alu -34 276 1 315 217 86 57 chr15 1400043 1400218 -84295536 - L1MC4a LINE L1 -1926 5882 5703 2245 94 0 3 chr15 1400220 1400529 -84295225 + AluSq SINE Alu 1 308 -5 936 61 0 0 chr15 1400898 1401012 -84294742 - AluY SINE Alu -197 114 1 530 295 70 44 chr15 1401015 1401469 -84294285 - L1MC5 LINE L1 -179 7782 7317 362 214 32 97 chr15 1401637 1401791 -84293963 - L1MC5 LINE L1 -861 7100 6957 514 231 35 35 chr15 1401845 1402048 -84293706 - L1M4 LINE L1 -3097 3049 2847 350 267 22 0 chr15 1402116 1402206 -84293548 - L1M4 LINE L1 -3327 2819 2728 1836 164 0 0 chr15 1404311 1404598 -84291156 + AluJb SINE Alu 1 287 -25 2167 96 7 0 chr15 1404607 1404899 -84290855 + AluSq SINE Alu 1 294 -19 244 367 61 0 chr15 1405335 1405433 -84290321 - L2 LINE L2 -1 3271 3168 2257 85 3 0 chr15 1408700 1408994 -84286760 - AluSc SINE Alu -14 295 1 2055 227 70 39 chr15 1409457 1410044 -84285710 - MER77 LTR ERV1 0 605 1 1032 254 53 22 chr15 1410198 1410521 -84285233 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 1410691 1410713 -84285041 + AT_rich Low_complexity Low_complexity 1 22 0 3787 193 62 59 chr15 1413143 1413959 -84281795 - L1MB5 LINE L1 0 6174 5361 2262 103 0 0 chr15 1413959 1414270 -84281484 - AluSx SINE Alu -1 311 1 3787 193 62 59 chr15 1414270 1415163 -84280591 - L1MB5 LINE L1 -813 5361 4457 1519 206 69 43 chr15 1415168 1415309 -84280445 - L1MB5 LINE L1 -2486 3660 3524 2327 70 0 0 chr15 1415309 1415609 -84280145 - AluY SINE Alu -11 300 1 1519 206 69 43 chr15 1415609 1415852 -84279902 - L1MB5 LINE L1 -2622 3524 3256 2147 99 0 13 chr15 1415852 1416155 -84279599 - AluSc SINE Alu 0 309 11 1519 206 69 43 chr15 1416155 1416304 -84279450 - L1MB5 LINE L1 -2890 3256 3112 926 199 0 5 chr15 1416309 1416505 -84279249 - AluJb SINE Alu 0 312 118 1398 223 58 17 chr15 1416505 1416968 -84278786 - L1MB5 LINE L1 -3052 3094 2613 1514 151 0 44 chr15 1417101 1417372 -84278382 + AluJb SINE Alu 23 281 -31 213 139 0 0 chr15 1417387 1417430 -84278324 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 219 181 56 0 chr15 1417430 1417502 -84278252 + (TA)n Simple_repeat Simple_repeat 2 77 0 1907 266 47 46 chr15 1417508 1418477 -84277277 - HERVL68 LTR ERVL -1920 1117 60 2332 176 109 0 chr15 1418485 1418990 -84276764 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 1418992 1419132 -84276622 - L1ME LINE L1 -339 5782 5631 1508 172 80 43 chr15 1422171 1422583 -84273171 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 1422584 1422973 -84272781 - MLT1C LTR MaLR -46 421 3 343 315 6 0 chr15 1423800 1423965 -84271789 + (TG)n Simple_repeat Simple_repeat 1 166 0 790 142 0 0 chr15 1424442 1424562 -84271192 + FLAM_A SINE Alu 20 139 -3 2116 108 0 13 chr15 1425387 1425694 -84270060 + AluSg SINE Alu 1 303 -7 2140 86 7 13 chr15 1427332 1427636 -84268118 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 1427659 1427765 -84267989 - L1ME4a LINE L1 0 6121 5995 338 248 10 0 chr15 1429802 1429901 -84265853 + MER5A DNA MER1_type 10 98 -80 2282 87 0 0 chr15 1430135 1430435 -84265319 + AluY SINE Alu 3 302 -9 856 135 0 81 chr15 1430435 1430620 -84265134 + AluSg/x SINE Alu 132 301 -9 979 197 170 3 chr15 1430764 1430916 -84264838 + MER2 DNA MER2_type 2 127 -217 2433 77 0 0 chr15 1430916 1431227 -84264527 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 1431227 1431368 -84264386 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 1431470 1431579 -84264175 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 1432623 1432797 -84262957 + MER58A DNA MER1_type 44 224 0 450 227 100 0 chr15 1433131 1433241 -84262513 + MLT1D LTR MaLR 385 505 0 224 281 101 0 chr15 1434352 1434441 -84261313 - L2 LINE L2 -215 3057 2960 390 242 68 43 chr15 1434982 1435143 -84260611 + MIR3 SINE MIR 3 167 -41 2043 130 0 3 chr15 1435921 1436229 -84259525 + AluSq SINE Alu 1 307 -6 884 257 15 20 chr15 1437154 1437480 -84258274 - MER34C LTR ERV1 -155 430 63 6373 34 4 0 chr15 1438218 1438956 -84256798 + L1PA5 LINE L1 5408 6148 -6 263 305 21 0 chr15 1439726 1439821 -84255933 - L2 LINE L2 -1 3312 3216 1745 161 10 26 chr15 1441848 1442159 -84253595 - AluSp SINE Alu -7 306 1 1968 140 0 0 chr15 1442531 1442824 -84252930 + AluSx SINE Alu 1 293 -19 217 314 0 0 chr15 1442994 1443064 -84252690 - MIR SINE MIR -8 254 185 3425 175 5 14 chr15 1443375 1444039 -84251715 - L1MA5 LINE L1 -1 6299 5642 1728 201 214 28 chr15 1444041 1444643 -84251111 + L1 LINE L1 3884 4597 -1549 28 29 0 0 chr15 1445281 1445316 -84250438 + AT_rich Low_complexity Low_complexity 1 35 0 200 158 105 0 chr15 1445369 1445445 -84250309 + (CATTT)n Simple_repeat Simple_repeat 5 88 0 561 123 81 6 chr15 1445466 1445781 -84249973 + (CATTT)n Simple_repeat Simple_repeat 1 338 0 43125 37 24 1 chr15 1445793 1451811 -84243943 - L1PA2 LINE L1 0 6155 3 313 177 42 0 chr15 1451812 1451908 -84243846 + (CATCT)n Simple_repeat Simple_repeat 2 101 0 337 289 85 73 chr15 1451916 1453288 -84242466 - L1MEd LINE L1 -4902 1217 795 578 119 89 8 chr15 1453288 1453524 -84242230 + (CATTT)n Simple_repeat Simple_repeat 1 255 0 301 131 66 0 chr15 1453528 1453589 -84242165 + (CATCT)n Simple_repeat Simple_repeat 5 69 0 350 287 111 64 chr15 1453593 1454263 -84241491 - L1MEd LINE L1 -4892 1227 798 218 87 43 72 chr15 1454324 1454393 -84241361 + (CATCT)n Simple_repeat Simple_repeat 1 67 0 36 33 0 16 chr15 1454517 1454541 -84241213 + AT_rich Low_complexity Low_complexity 1 24 -36 703 189 23 30 chr15 1454541 1454555 -84241199 - FLAM_C SINE Alu -171 131 118 1420 189 50 13 chr15 1454555 1454856 -84240898 - AluJo SINE Alu 0 312 1 198 0 0 0 chr15 1454856 1454878 -84240876 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 703 189 23 30 chr15 1454878 1454994 -84240760 - FLAM_C SINE Alu -182 120 1 36 33 0 16 chr15 1454994 1455030 -84240724 + AT_rich Low_complexity Low_complexity 24 60 0 273 324 47 0 chr15 1455420 1455568 -84240186 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 261 141 0 78 chr15 1455568 1455759 -84239995 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 219 177 0 99 chr15 1455877 1456164 -84239590 + (CAGGG)n Simple_repeat Simple_repeat 1 258 0 340 171 0 55 chr15 1456191 1456355 -84239399 + (CAGGG)n Simple_repeat Simple_repeat 2 156 0 361 178 2 76 chr15 1456488 1457067 -84238687 + (CAGGG)n Simple_repeat Simple_repeat 1 535 0 205 141 0 90 chr15 1457074 1457152 -84238602 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 788 126 0 17 chr15 1457206 1457325 -84238429 - AluJb SINE Alu -179 133 17 392 223 32 11 chr15 1457327 1457421 -84238333 + MIR SINE MIR 92 187 -75 335 293 48 0 chr15 1457630 1457777 -84237977 + (CCCTAG)n Simple_repeat Simple_repeat 6 159 0 284 265 61 7 chr15 1457989 1458136 -84237618 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 203 174 0 47 chr15 1458140 1458226 -84237528 + (CAGGG)n Simple_repeat Simple_repeat 5 86 0 444 275 47 0 chr15 1458237 1458408 -84237346 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 296 277 54 14 chr15 1458421 1458569 -84237185 + (CTAGGG)n Simple_repeat Simple_repeat 1 154 0 239 321 45 0 chr15 1458589 1458723 -84237031 + (CTAGGG)n Simple_repeat Simple_repeat 1 140 0 431 250 34 23 chr15 1458785 1458961 -84236793 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 244 152 0 79 chr15 1458962 1459126 -84236628 + (CAGGG)n Simple_repeat Simple_repeat 1 151 0 307 302 28 28 chr15 1459142 1459321 -84236433 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 189 143 7 79 chr15 1459370 1459510 -84236244 + (CAGGG)n Simple_repeat Simple_repeat 2 131 0 473 259 46 9 chr15 1459613 1459951 -84235803 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 203 130 0 22 chr15 1459969 1460015 -84235739 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 213 156 0 74 chr15 1460098 1460233 -84235521 + (CAGGG)n Simple_repeat Simple_repeat 1 125 0 415 260 48 0 chr15 1460289 1460435 -84235319 + (CTAGGG)n Simple_repeat Simple_repeat 2 154 0 359 286 48 0 chr15 1460554 1460722 -84235032 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 209 238 16 76 chr15 1460673 1460858 -84234896 + (CAAGG)n Simple_repeat Simple_repeat 2 175 0 * 336 198 6 72 chr15 1460806 1460973 -84234781 + (CAGGG)n Simple_repeat Simple_repeat 1 156 0 236 183 0 59 chr15 1461052 1461221 -84234533 + (CAGGG)n Simple_repeat Simple_repeat 2 160 0 815 276 109 35 chr15 1462045 1462397 -84233357 - HSREP522 Satellite telomeric -171 377 1 4123 214 61 37 chr15 1462528 1463750 -84232004 + L1 LINE L1 2785 4035 -2111 625 96 0 0 chr15 1463754 1463837 -84231917 + AluJb SINE Alu 208 290 -22 943 152 0 24 chr15 1463868 1464032 -84231722 + AluJo SINE Alu 6 165 -147 2608 187 36 13 chr15 1464032 1464584 -84231170 + L1MB7 LINE L1 5599 6163 -21 22 35 0 0 chr15 1464770 1464799 -84230955 + AT_rich Low_complexity Low_complexity 1 29 0 647 197 0 47 chr15 1464799 1464926 -84230828 + FLAM_A SINE Alu 1 121 -12 2084 131 0 3 chr15 1464935 1465241 -84230513 + AluSx SINE Alu 1 305 -7 350 186 17 0 chr15 1465241 1465300 -84230454 - L1MC4 LINE L1 -1340 6702 6643 1495 160 45 17 chr15 1465447 1465734 -84230020 + AluSx SINE Alu 1 295 -17 2049 136 0 3 chr15 1465737 1466046 -84229708 + AluSx SINE Alu 1 308 -4 1266 171 35 52 chr15 1466315 1466602 -84229152 - AluJo SINE Alu -30 282 1 343 342 8 17 chr15 1466794 1466911 -84228843 - L2 LINE L2 0 3272 3157 186 118 0 0 chr15 1467468 1467502 -84228252 + (CA)n Simple_repeat Simple_repeat 2 35 0 2242 61 14 0 chr15 1468389 1468682 -84227072 - AluY SINE Alu -14 297 1 226 368 18 36 chr15 1468790 1468956 -84226798 + MIR SINE MIR 12 174 -88 2596 127 90 19 chr15 1468988 1469475 -84226279 - Tigger3(Golem) DNA MER2_type -3 3026 2505 2096 121 0 9 chr15 1469475 1469790 -84225964 + AluSq SINE Alu 2 313 0 528 321 24 6 chr15 1470149 1470317 -84225437 + MIR SINE MIR 13 183 -79 638 272 75 55 chr15 1470439 1470693 -84225061 + MER46C DNA MER2_type 80 338 0 1959 139 0 3 chr15 1470981 1471282 -84224472 + AluSx SINE Alu 1 300 -12 1845 163 0 0 chr15 1471966 1472261 -84223493 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr15 1472307 1472328 -84223426 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1419 165 32 36 chr15 1473767 1473904 -84221850 + AluJo SINE Alu 1 137 -175 2071 130 3 0 chr15 1473904 1474205 -84221549 + AluSx SINE Alu 1 302 -10 1419 165 32 36 chr15 1474205 1474346 -84221408 + AluJo SINE Alu 137 278 -34 367 180 33 16 chr15 1474346 1474468 -84221286 + GA-rich Low_complexity Low_complexity 4 127 0 477 125 0 14 chr15 1474468 1474540 -84221214 + AluS SINE Alu 3 73 -239 2025 134 3 0 chr15 1474751 1475056 -84220698 + AluSq SINE Alu 1 306 -7 803 243 6 0 chr15 1475090 1475271 -84220483 + AluJo SINE Alu 122 303 -9 209 333 42 25 chr15 1475306 1475426 -84220328 - MIR SINE MIR -57 151 30 1891 166 55 19 chr15 1476270 1476632 -84219122 + THE1C LTR MaLR 1 375 0 1432 134 0 0 chr15 1477205 1477422 -84218332 + AluSg/x SINE Alu 85 301 -9 514 254 90 9 chr15 1478357 1478529 -84217225 - MIR SINE MIR -56 206 22 1717 142 4 4 chr15 1478914 1479188 -84216566 + AluJb SINE Alu 1 274 -38 433 255 172 14 chr15 1479740 1479885 -84215869 - MER5B DNA MER1_type -7 171 4 213 39 0 0 chr15 1479908 1479934 -84215820 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1658 142 3 20 chr15 1479943 1480238 -84215516 - TAR1 Satellite telomeric -297 1814 1525 467 306 138 56 chr15 1480621 1481287 -84214467 - L1MEd LINE L1 -5353 766 46 339 181 86 9 chr15 1481800 1481905 -84213849 + MIR3 SINE MIR 81 193 -15 1160 201 108 0 chr15 1482691 1482940 -84212814 + MER68 LTR ERV1 287 562 0 2937 231 84 58 chr15 1482942 1483073 -84212681 - L1 LINE L1 -1208 5959 5833 2080 92 0 74 chr15 1483073 1483399 -84212355 - AluY SINE Alu -9 302 1 2937 231 84 58 chr15 1483399 1483481 -84212273 - L1 LINE L1 -1334 5833 5755 1967 147 0 3 chr15 1483481 1483793 -84211961 - AluSq SINE Alu -2 311 1 2937 231 84 58 chr15 1483793 1484200 -84211554 - L1 LINE L1 -1412 5755 5360 1770 166 3 3 chr15 1484200 1484502 -84211252 + AluJb SINE Alu 1 302 -10 2937 231 84 58 chr15 1484502 1485044 -84210710 - L1 LINE L1 -1807 5360 4765 810 170 107 13 chr15 1485097 1485120 -84210634 - FRAM SINE Alu -141 171 152 255 31 0 0 chr15 1485120 1485152 -84210602 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr15 1485151 1485180 -84210574 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 * 810 170 107 13 chr15 1485152 1485315 -84210439 - FRAM SINE Alu -160 152 1 27 49 0 0 chr15 1485330 1485371 -84210383 + AT_rich Low_complexity Low_complexity 1 41 0 1990 119 36 10 chr15 1485400 1485702 -84210052 - AluSx SINE Alu -2 310 1 1921 133 23 0 chr15 1486462 1486763 -84208991 + AluSx SINE Alu 1 308 -4 1906 123 0 14 chr15 1487257 1487542 -84208212 - AluSx SINE Alu -19 293 13 492 262 16 27 chr15 1487642 1487730 -84208024 - L1 LINE L1 -2383 4784 4697 396 0 0 0 chr15 1487730 1487774 -84207980 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 262 16 27 chr15 1487774 1487868 -84207886 - L1 LINE L1 -2470 4697 4604 2231 218 15 17 chr15 1487910 1488378 -84207376 - L1 LINE L1 -5941 1227 761 1169 206 86 86 chr15 1488440 1488872 -84206882 + MSTB1 LTR MaLR 1 432 0 1347 221 246 10 chr15 1488881 1489364 -84206390 - L1 LINE L1 -6571 597 1 649 269 187 26 chr15 1489487 1489877 -84205877 - L1ME3A LINE L1 -1 6169 5717 314 198 0 74 chr15 1490047 1490128 -84205626 - L1ME3A LINE L1 -2241 5544 5470 379 303 61 6 chr15 1490149 1490314 -84205440 - L1MEd LINE L1 -5943 176 3 1351 95 37 0 chr15 1490631 1490821 -84204933 + AluY SINE Alu 106 302 -9 2175 103 3 0 chr15 1491029 1491319 -84204435 + AluSx SINE Alu 1 291 -21 1155 193 82 4 chr15 1491535 1491805 -84203949 - L1ME3A LINE L1 -769 5377 5087 309 266 16 57 chr15 1492256 1492380 -84203374 + Charlie1 DNA MER1_type 1 119 -2642 432 195 57 24 chr15 1492490 1492613 -84203141 + Charlie1 DNA MER1_type 2523 2649 -112 275 294 84 0 chr15 1492643 1492762 -84202992 - L1MA9 LINE L1 -5 6307 6179 979 161 134 28 chr15 1493323 1493577 -84202177 + AluJo SINE Alu 1 281 -31 857 199 61 30 chr15 1493588 1493696 -84202058 - Charlie5 DNA MER1_type -119 2505 2402 2179 105 0 7 chr15 1493696 1494002 -84201752 - AluSq SINE Alu -9 304 1 857 199 61 30 chr15 1494002 1494124 -84201630 - Charlie5 DNA MER1_type -222 2402 2268 477 164 103 0 chr15 1494143 1494259 -84201495 - MER3 DNA MER1_type -41 168 41 232 278 142 57 chr15 1494262 1494731 -84201023 - L2 LINE L2 -208 3064 2554 193 312 18 46 chr15 1494802 1494911 -84200843 - L2 LINE L2 -987 2327 2222 735 107 116 16 chr15 1494991 1495112 -84200642 - FLAM_C SINE Alu 0 133 1 499 280 63 7 chr15 1495372 1495515 -84200239 + MIR SINE MIR 42 192 -70 4958 128 85 15 chr15 1495519 1495578 -84200176 - Tigger2 DNA MER2_type 0 2718 2665 2120 106 14 0 chr15 1495578 1495870 -84199884 + AluSg SINE Alu 1 296 -14 4958 128 85 15 chr15 1495870 1496656 -84199098 - Tigger2 DNA MER2_type -53 2665 1814 1587 185 58 48 chr15 1496633 1496989 -84198765 + MER49 LTR ERV1 515 866 -57 * 1879 148 0 16 chr15 1496989 1497294 -84198460 + AluSx SINE Alu 6 305 -7 1478 162 8 15 chr15 1497304 1497563 -84198191 + AluJo SINE Alu 1 257 -55 1587 185 58 48 chr15 1497563 1497590 -84198164 + MER49 LTR ERV1 874 913 -10 672 125 0 0 chr15 1497616 1497720 -84198034 - Tigger2 DNA MER2_type -1742 976 873 786 204 40 28 chr15 1497735 1497911 -84197843 - AluJb SINE Alu -1 311 134 4316 126 64 29 chr15 1497911 1498676 -84197078 - Tigger2 DNA MER2_type -1833 885 94 505 175 0 0 chr15 1498689 1498769 -84196985 - AluJ/FLAM SINE Alu -229 83 4 445 158 13 0 chr15 1498772 1498848 -84196906 - Tigger2 DNA MER2_type -1831 887 811 721 161 0 9 chr15 1498902 1499014 -84196740 + FLAM_C SINE Alu 3 113 -30 1972 125 0 29 chr15 1499019 1499330 -84196424 - AluSc SINE Alu -7 302 1 363 181 0 42 chr15 1499372 1499444 -84196310 - Tigger2 DNA MER2_type -2649 69 1 957 236 71 13 chr15 1499585 1500405 -84195349 - L1ME1 LINE L1 -142 6024 5032 2983 167 70 2 chr15 1500434 1500978 -84194776 - ERVL LTR ERVL -357 5407 4827 803 142 0 0 chr15 1500978 1501091 -84194663 - AluSq/x SINE Alu -198 114 2 8338 247 61 32 chr15 1501114 1503539 -84192215 - L1MC/D LINE L1 -743 5797 3445 1658 153 28 17 chr15 1503539 1503827 -84191927 - AluJb SINE Alu -21 291 1 8338 247 61 32 chr15 1503827 1504489 -84191265 - L1MC/D LINE L1 -3095 3445 2687 2778 13 0 0 chr15 1504489 1504800 -84190954 - AluY SINE Alu 0 311 1 8338 247 61 32 chr15 1504800 1504922 -84190832 - L1MC/D LINE L1 -3853 2687 2570 1026 256 120 50 chr15 1504997 1505512 -84190242 - MER77 LTR ERV1 -1 604 54 3114 245 94 17 chr15 1505543 1506779 -84188975 - L1MDb LINE L1 -4012 2528 1106 1491 180 3 49 chr15 1506779 1507106 -84188648 - AluJo SINE Alu 0 312 1 3114 245 94 17 chr15 1507106 1507383 -84188371 - L1MDb LINE L1 -5434 1106 852 731 276 62 23 chr15 1507554 1507811 -84187943 - L1MDb LINE L1 -6212 328 62 476 317 100 42 chr15 1508958 1509267 -84186487 + HAL1 LINE L1 1246 1572 -935 873 127 8 0 chr15 1509602 1509736 -84186018 + AluSq/x SINE Alu 1 135 -177 2035 118 0 0 chr15 1509736 1510032 -84185722 + AluSx SINE Alu 1 296 -16 700 184 45 11 chr15 1510176 1510361 -84185393 - L1M3 LINE L1 -661 5510 5288 182 216 0 0 chr15 1510440 1510477 -84185277 + L2 LINE L2 3261 3297 -16 749 260 27 14 chr15 1512589 1512816 -84182938 + LTR33 LTR ERVL 35 252 -271 348 288 15 15 chr15 1512868 1513000 -84182754 + LTR33 LTR ERVL 382 513 -8 259 247 55 0 chr15 1513543 1513616 -84182138 - MIR3 SINE MIR -5 203 127 1994 150 3 35 chr15 1514672 1514860 -84180894 + L1M3 LINE L1 5442 5616 -555 2376 108 93 18 chr15 1514860 1515258 -84180496 + MSTA LTR MaLR 1 428 0 1994 150 3 35 chr15 1515258 1515415 -84180339 + L1M3 LINE L1 5616 5776 -395 321 303 110 0 chr15 1516822 1516931 -84178823 + L2 LINE L2 3143 3263 -9 199 346 59 0 chr15 1516948 1517049 -84178705 + MIR SINE MIR 34 140 -122 258 32 0 0 chr15 1517102 1517133 -84178621 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 261 98 0 0 chr15 1517132 1517173 -84178581 + (TA)n Simple_repeat Simple_repeat 1 41 0 15172 80 10 1 chr15 1519397 1522182 -84173572 - L1PA7 LINE L1 -4 6150 3338 15743 116 13 22 chr15 1522290 1524760 -84170994 - L1PA7 LINE L1 -3076 3070 625 726 273 125 13 chr15 1525305 1525725 -84170029 + L2 LINE L2 2530 3052 -261 207 167 0 0 chr15 1525828 1525870 -84169884 + L2 LINE L2 3231 3272 0 25 0 0 0 chr15 1526144 1526169 -84169585 + AT_rich Low_complexity Low_complexity 1 25 0 1665 243 92 27 chr15 1526264 1526745 -84169009 + LTR33 LTR ERVL 4 515 -6 2281 105 7 0 chr15 1526751 1527047 -84168707 - AluSg SINE Alu -12 298 1 8541 60 6 91 chr15 1527661 1528922 -84166832 - SVA Other Other -7 1379 226 290 302 78 8 chr15 1529227 1529356 -84166398 + MIR SINE MIR 51 188 -74 1916 178 79 5 chr15 1529366 1529760 -84165994 + L1MC2 LINE L1 5917 6339 -5 30 45 0 0 chr15 1529782 1529826 -84165928 + AT_rich Low_complexity Low_complexity 1 44 0 475 294 20 7 chr15 1530779 1530932 -84164822 - MER103 DNA DNA 0 166 12 2317 112 3 0 chr15 1531016 1531319 -84164435 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr15 1531450 1531478 -84164276 + AT_rich Low_complexity Low_complexity 1 28 0 375 0 0 0 chr15 1531756 1531799 -84163955 - MADE1 DNA Mariner 0 80 38 333 23 23 0 chr15 1532603 1532646 -84163108 + MADE1 DNA Mariner 37 80 0 380 313 37 82 chr15 1532739 1532931 -84162823 + MIR SINE MIR 6 184 -78 1590 167 36 4 chr15 1532931 1533054 -84162700 + AluJb SINE Alu 1 119 -193 360 0 0 0 chr15 1533054 1533094 -84162660 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 167 36 4 chr15 1533094 1533246 -84162508 + AluJb SINE Alu 119 285 -27 380 313 37 82 chr15 1533246 1533321 -84162433 + MIR SINE MIR 184 261 -1 200 307 157 30 chr15 1535817 1536276 -84159478 + L2 LINE L2 2118 2634 -680 863 186 56 0 chr15 1536525 1536686 -84159068 - FAM SINE Alu -5 170 1 347 319 50 0 chr15 1536688 1536807 -84158947 + L2 LINE L2 3125 3249 -23 219 36 0 0 chr15 1537340 1537368 -84158386 + (A)n Simple_repeat Simple_repeat 1 28 0 1848 176 38 61 chr15 1537429 1537906 -84157848 - MLT1C LTR MaLR -1 466 1 811 189 34 34 chr15 1538569 1538744 -84157010 + FAM SINE Alu 1 175 0 22 35 0 0 chr15 1538744 1538773 -84156981 + AT_rich Low_complexity Low_complexity 1 29 0 1744 172 40 3 chr15 1538815 1539112 -84156642 + AluJo SINE Alu 1 308 -4 541 194 191 53 chr15 1539235 1539435 -84156319 - L1ME4a LINE L1 -4 6117 5946 1834 141 27 13 chr15 1539435 1539733 -84156021 - AluJb SINE Alu -10 302 1 541 194 191 53 chr15 1539733 1539887 -84155867 - L1ME4a LINE L1 -175 5946 5714 361 203 0 0 chr15 1540137 1540206 -84155548 + AluJ/FLAM SINE Alu 1 69 -233 231 186 0 0 chr15 1540244 1540287 -84155467 + G-rich Low_complexity Low_complexity 5 47 0 834 175 111 11 chr15 1540290 1540479 -84155275 + MER50 LTR ERV1 33 240 -494 * 1855 126 11 7 chr15 1540462 1540740 -84155014 + MER50 LTR ERV1 433 711 -23 292 254 0 0 chr15 1540744 1540799 -84154955 + FLAM SINE Alu 71 125 -8 186 328 107 8 chr15 1541056 1541187 -84154567 + MIR SINE MIR 3 146 -116 188 287 210 19 chr15 1541219 1541376 -84154378 - MIR SINE MIR -54 208 22 928 193 49 34 chr15 1541524 1541789 -84153965 - MER96B DNA MER1_type? 0 417 149 2296 72 31 7 chr15 1541820 1542113 -84153641 + AluY SINE Alu 1 300 -11 21 0 0 0 chr15 1542232 1542253 -84153501 + AT_rich Low_complexity Low_complexity 1 21 0 2119 88 56 7 chr15 1542308 1542592 -84153162 - AluSq SINE Alu -15 298 1 2188 120 7 0 chr15 1543790 1544098 -84151656 + AluSg SINE Alu 1 310 0 2294 104 0 0 chr15 1544158 1544456 -84151298 + AluSc SINE Alu 1 298 -11 662 137 24 0 chr15 1544505 1544629 -84151125 + L1MB3 LINE L1 6041 6167 -16 21 36 0 0 chr15 1544673 1544701 -84151053 + AT_rich Low_complexity Low_complexity 1 28 0 2144 118 10 7 chr15 1544866 1545163 -84150591 - AluSx SINE Alu -14 298 1 1407 202 65 110 chr15 1545176 1545687 -84150067 + MER20B DNA MER1_type 64 551 -232 21 0 0 0 chr15 1545687 1545708 -84150046 + AT_rich Low_complexity Low_complexity 1 21 0 2396 88 0 0 chr15 1546553 1546847 -84148907 + AluSg1 SINE Alu 2 295 -14 466 248 61 43 chr15 1546961 1547125 -84148629 + L1ME4a LINE L1 5696 5876 -245 1963 159 10 0 chr15 1547125 1547427 -84148327 + AluJb SINE Alu 2 306 -6 466 248 61 43 chr15 1547427 1547554 -84148200 + L1ME4a LINE L1 5876 5999 -122 268 338 81 5 chr15 1547997 1548354 -84147400 + L2 LINE L2 2593 2981 -291 2866 69 11 16 chr15 1548356 1548733 -84147021 + THE1C LTR MaLR 1 375 0 359 326 62 17 chr15 1548880 1549058 -84146696 + MIR SINE MIR 25 210 -52 238 274 20 78 chr15 1549186 1549288 -84146466 + L2 LINE L2 2992 3087 -185 312 299 47 19 chr15 1549519 1549626 -84146128 + L2 LINE L2 3163 3272 0 487 287 91 35 chr15 1550237 1550674 -84145080 + LTR33 LTR ERVL 23 521 0 655 221 23 0 chr15 1550702 1550833 -84144921 + MER94 DNA DNA 1 134 0 2047 134 7 0 chr15 1553268 1553559 -84142195 + AluSx SINE Alu 1 293 -19 731 161 0 0 chr15 1553634 1553752 -84142002 - FLAM_A SINE Alu -15 127 10 468 86 0 0 chr15 1553779 1553849 -84141905 - Alu SINE Alu 0 312 243 1386 82 66 6 chr15 1553961 1554143 -84141611 - AluY SINE Alu -118 193 1 928 156 0 19 chr15 1554278 1554432 -84141322 + AluJb SINE Alu 140 290 -22 225 154 77 0 chr15 1554440 1554505 -84141249 + GA-rich Low_complexity Low_complexity 1 70 0 466 60 0 0 chr15 1554685 1554752 -84141002 - Alu SINE Alu 0 310 244 754 147 16 0 chr15 1554752 1554881 -84140873 - L1MB3 LINE L1 -41 6142 6012 2035 141 3 0 chr15 1555116 1555430 -84140324 + AluSx SINE Alu 1 315 0 316 296 44 0 chr15 1555970 1556086 -84139668 - MIR SINE MIR -53 155 34 38 39 0 0 chr15 1556257 1556309 -84139445 + AT_rich Low_complexity Low_complexity 1 52 0 2092 141 0 3 chr15 1556315 1556614 -84139140 + AluSq SINE Alu 1 298 -15 612 246 0 0 chr15 1556616 1556738 -84139016 + FLAM_A SINE Alu 1 122 -11 979 188 11 11 chr15 1556772 1556953 -84138801 + AluJo SINE Alu 1 181 -131 1403 117 117 0 chr15 1556954 1557167 -84138587 - AluSx SINE Alu -15 297 60 710 182 0 0 chr15 1557173 1557294 -84138460 + AluJo SINE Alu 190 310 -2 1453 191 57 7 chr15 1557312 1557595 -84138159 + AluJb SINE Alu 1 297 -15 2009 157 0 0 chr15 1557596 1557890 -84137864 - AluSx SINE Alu -18 294 1 2506 68 0 0 chr15 1557898 1558191 -84137563 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 1558198 1558219 -84137535 + AT_rich Low_complexity Low_complexity 1 21 0 284 321 28 0 chr15 1558346 1558455 -84137299 - MIR SINE MIR -139 123 12 2074 126 11 0 chr15 1558775 1559061 -84136693 + AluSg SINE Alu 4 292 -18 1026 116 60 101 chr15 1559063 1559124 -84136630 - L1MB7 LINE L1 -16 6168 6106 1985 127 0 17 chr15 1559124 1559423 -84136331 - AluJo SINE Alu -13 299 6 1026 116 60 101 chr15 1559423 1559629 -84136125 - L1MB7 LINE L1 -78 6106 5912 409 304 192 14 chr15 1559633 1560117 -84135637 + L2 LINE L2 1823 2392 -922 306 166 59 27 chr15 1560123 1560230 -84135524 + AluJ/FLAM SINE Alu 2 86 -216 887 192 11 6 chr15 1560413 1560590 -84135164 + FRAM SINE Alu 1 173 -3 272 297 60 22 chr15 1560639 1560824 -84134930 + L2 LINE L2 2434 2625 -689 379 338 163 12 chr15 1560929 1561352 -84134402 + L2 LINE L2 2827 3313 0 1844 145 28 3 chr15 1561463 1561745 -84134009 - AluSx SINE Alu -23 289 1 1612 168 0 67 chr15 1562025 1562159 -84133595 + AluJo SINE Alu 1 142 -170 2470 83 0 0 chr15 1562159 1562461 -84133293 + AluY SINE Alu 1 302 -9 1612 168 0 67 chr15 1562461 1562641 -84133113 + AluJo SINE Alu 142 294 -18 1559 142 4 0 chr15 1563094 1563319 -84132435 + AluSq SINE Alu 35 260 -53 1714 131 0 46 chr15 1563347 1563483 -84132271 + AluSx SINE Alu 1 121 -191 2176 110 0 10 chr15 1563483 1563784 -84131970 + AluSg SINE Alu 1 298 -12 1714 131 0 46 chr15 1563784 1563907 -84131847 + AluSx SINE Alu 121 248 -64 2103 118 45 0 chr15 1564502 1564790 -84130964 - AluSx SINE Alu -11 301 1 1747 155 7 20 chr15 1564841 1565138 -84130616 + AluJo SINE Alu 17 309 -3 1837 170 7 0 chr15 1565143 1565432 -84130322 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr15 1565432 1565455 -84130299 + AT_rich Low_complexity Low_complexity 1 23 0 2038 131 3 0 chr15 1565498 1565803 -84129951 + AluSx SINE Alu 1 306 -6 1664 160 25 110 chr15 1565819 1566218 -84129536 + MLT1A1 LTR MaLR 1 365 0 1865 124 4 4 chr15 1566418 1566693 -84129061 + AluSg SINE Alu 1 275 -35 1801 116 40 4 chr15 1566986 1567284 -84128470 + AluSq SINE Alu 1 308 0 1116 144 5 21 chr15 1567394 1567582 -84128172 - AluJb SINE Alu -26 286 102 929 122 0 67 chr15 1567683 1567847 -84127907 - AluJo SINE Alu -159 153 1 539 256 56 17 chr15 1567847 1568027 -84127727 - MER47A DNA MER2_type -179 187 1 486 0 0 0 chr15 1569931 1569985 -84125769 + (TG)n Simple_repeat Simple_repeat 2 55 0 345 186 0 14 chr15 1571263 1571333 -84124421 - MLT1D LTR MaLR -7 498 430 228 302 83 0 chr15 1571351 1571447 -84124307 - U13 snRNA snRNA 0 104 1 * 780 223 51 17 chr15 1571443 1571850 -84123904 - MLT1D LTR MaLR -47 458 5 1513 178 13 7 chr15 1572186 1572489 -84123265 - AluJb SINE Alu -2 310 6 1871 126 3 30 chr15 1572511 1572813 -84122941 - AluSq SINE Alu -19 294 1 1386 185 57 4 chr15 1573832 1574113 -84121641 + AluJo SINE Alu 1 296 -16 2138 105 0 3 chr15 1574115 1574411 -84121343 + AluSx SINE Alu 1 295 -17 262 238 131 0 chr15 1574456 1574540 -84121214 - L1MC5 LINE L1 -866 7095 7001 2286 93 0 3 chr15 1575126 1575437 -84120317 - AluSp SINE Alu -3 310 1 876 188 109 0 chr15 1575437 1575593 -84120161 - AluJb SINE Alu -12 300 118 477 0 0 0 chr15 1575593 1575646 -84120108 + (TG)n Simple_repeat Simple_repeat 2 54 0 876 188 109 0 chr15 1575646 1575681 -84120073 - AluJb SINE Alu -194 118 88 191 114 29 0 chr15 1577420 1577455 -84118299 + CT-rich Low_complexity Low_complexity 2 37 0 4766 168 23 39 chr15 1577563 1578462 -84117292 + MER49 LTR ERV1 37 921 -2 222 37 0 0 chr15 1578474 1578501 -84117253 + (CA)n Simple_repeat Simple_repeat 2 28 0 840 238 21 0 chr15 1578501 1578684 -84117070 + ERVL LTR ERVL 1003 1189 -4575 313 146 10 21 chr15 1578686 1578782 -84116972 + (TTGG)n Simple_repeat Simple_repeat 1 95 0 3148 264 33 6 chr15 1578785 1579604 -84116150 + ERVL LTR ERVL 1174 2014 -3750 606 211 0 0 chr15 1579605 1579709 -84116045 - AluJ SINE Alu -207 105 2 1898 95 23 56 chr15 1579797 1579961 -84115793 - AluSg SINE Alu -15 295 144 2190 104 0 7 chr15 1579961 1580268 -84115486 - AluY SINE Alu -6 305 1 1898 95 23 56 chr15 1580268 1580408 -84115346 - AluSg SINE Alu -166 144 1 1955 135 0 0 chr15 1580903 1581191 -84114563 - AluSx SINE Alu -24 288 1 290 87 0 0 chr15 1581195 1581241 -84114513 - L1PA13 LINE L1 -129 6034 5989 * 1738 152 7 112 chr15 1581238 1581385 -84114369 + L1PA16 LINE L1 5769 5930 -236 3217 103 0 2 chr15 1581385 1581833 -84113921 - L1PA7 LINE L1 0 6154 5708 1738 152 7 112 chr15 1581833 1582105 -84113649 + L1PA16 LINE L1 5930 6144 -22 1531 161 15 68 chr15 1582110 1582201 -84113553 + L1PA16 LINE L1 5611 5705 -461 1973 113 7 0 chr15 1582201 1582483 -84113271 - AluSx SINE Alu -6 306 23 1531 161 15 68 chr15 1582483 1582715 -84113039 + L1PA16 LINE L1 5705 5917 -249 919 152 6 6 chr15 1582716 1582874 -84112880 + L1PA16 LINE L1 5761 5918 -248 994 145 0 6 chr15 1582875 1583034 -84112720 + L1PA16 LINE L1 5762 5919 -247 894 144 12 12 chr15 1583034 1583194 -84112560 + L1PA16 LINE L1 5762 5921 -245 * 1376 185 2 11 chr15 1583187 1583625 -84112129 + L1PA16 LINE L1 5718 6033 -133 2319 92 0 0 chr15 1583730 1584033 -84111721 - AluSx SINE Alu -9 303 1 572 186 0 0 chr15 1584168 1584310 -84111444 + L1PA16 LINE L1 6040 6181 0 367 276 4 15 chr15 1585513 1585779 -84109975 + (TG)n Simple_repeat Simple_repeat 1 262 0 344 148 0 0 chr15 1585791 1585845 -84109909 - Alu SINE Alu -3 298 245 1169 125 0 0 chr15 1585847 1586015 -84109739 + AluSg/x SINE Alu 94 261 -49 702 91 0 64 chr15 1586015 1586389 -84109365 + (CAGC)n Simple_repeat Simple_repeat 1 349 0 899 70 2 68 chr15 1586436 1587073 -84108681 + (CAGC)n Simple_repeat Simple_repeat 1 594 0 510 95 0 67 chr15 1587103 1587282 -84108472 + (CAGC)n Simple_repeat Simple_repeat 4 170 0 960 31 0 65 chr15 1587324 1587708 -84108046 + (CAGC)n Simple_repeat Simple_repeat 1 358 0 704 68 0 68 chr15 1587734 1587924 -84107830 + (CAGC)n Simple_repeat Simple_repeat 2 178 0 809 67 0 76 chr15 1587967 1588554 -84107200 + (CAGC)n Simple_repeat Simple_repeat 1 542 0 839 69 0 77 chr15 1588573 1589652 -84106102 + (CAGC)n Simple_repeat Simple_repeat 1 995 0 837 52 0 63 chr15 1589683 1589874 -84105880 + (CAGC)n Simple_repeat Simple_repeat 2 180 0 317 308 0 0 chr15 1590166 1590244 -84105510 + L2 LINE L2 3195 3272 0 235 243 230 0 chr15 1590272 1590346 -84105408 + L2 LINE L2 2605 2695 -619 192 182 0 0 chr15 1592166 1592210 -84103544 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 246 182 0 0 chr15 1592454 1592498 -84103256 - MLT1C LTR MaLR -17 488 445 635 223 117 51 chr15 1592506 1592780 -84102974 - MLT1C LTR MaLR -173 294 3 1127 292 16 7 chr15 1595381 1595689 -84100065 + L1MD2 LINE L1 20 330 -6079 561 251 18 54 chr15 1595698 1595865 -84099889 + L1MD2 LINE L1 388 548 -5861 427 123 27 0 chr15 1595865 1595938 -84099816 - MSTD LTR MaLR 0 396 322 5659 245 63 48 chr15 1596284 1597896 -84097858 + L1MD2 LINE L1 2661 4247 -2372 1963 173 64 50 chr15 1597896 1598318 -84097436 + MSTA LTR MaLR 1 428 0 5659 245 63 48 chr15 1598318 1600557 -84095197 + L1MD2 LINE L1 4247 6601 -18 419 358 32 5 chr15 1601904 1602094 -84093660 - L2 LINE L2 -1300 2014 1820 1235 121 0 0 chr15 1602094 1602276 -84093478 + L1PA10 LINE L1 5987 6168 0 1650 209 73 19 chr15 1602281 1602706 -84093048 + L1MB4 LINE L1 5731 6178 -2 53 30 0 0 chr15 1603401 1603468 -84092286 + AT_rich Low_complexity Low_complexity 1 67 0 245 300 43 0 chr15 1604005 1604075 -84091679 - L2 LINE L2 -2 3270 3198 21 0 0 0 chr15 1604445 1604466 -84091288 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 1604679 1604702 -84091052 + AT_rich Low_complexity Low_complexity 1 23 0 198 358 70 30 chr15 1605086 1605227 -84090527 - MIR3 SINE MIR -78 130 14 204 163 23 0 chr15 1606224 1606267 -84089487 + (TA)n Simple_repeat Simple_repeat 1 44 0 194 281 103 62 chr15 1606291 1606437 -84089317 - MIR SINE MIR -59 203 52 528 157 88 0 chr15 1606900 1607002 -84088752 + MER20 DNA MER1_type 77 187 -32 279 255 149 56 chr15 1607083 1607244 -84088510 + LTR16A LTR ERVL 182 357 -93 1633 70 43 66 chr15 1607530 1607788 -84087966 + AluY SINE Alu 54 305 -6 347 248 62 26 chr15 1607788 1607901 -84087853 + HERV16 LTR ERVL 86 202 -4794 1030 298 65 49 chr15 1607938 1608488 -84087266 + HERV16 LTR ERVL 192 750 -4246 6088 58 1 4 chr15 1608488 1609261 -84086493 - L1P LINE L1 -1725 4421 3651 7045 72 1 4 chr15 1609261 1610886 -84084868 + L1PA8 LINE L1 4551 6172 0 230 279 63 13 chr15 1611465 1611544 -84084210 + L2 LINE L2 3231 3313 0 1601 214 70 62 chr15 1611558 1611994 -84083760 + MLT1D LTR MaLR 1 443 -62 1765 101 79 8 chr15 1611994 1612261 -84083493 - AluSc SINE Alu -23 286 1 1601 214 70 62 chr15 1612261 1612325 -84083429 + MLT1D LTR MaLR 443 505 0 301 329 134 12 chr15 1612457 1612621 -84083133 + MIR SINE MIR 8 191 -71 310 292 142 31 chr15 1612901 1613127 -84082627 + MIR SINE MIR 12 262 0 330 240 74 50 chr15 1613271 1613392 -84082362 + L2 LINE L2 3187 3310 -3 253 284 4 13 chr15 1613549 1613625 -84082129 + MIR SINE MIR 65 144 -64 2827 165 0 25 chr15 1613783 1614293 -84081461 - LOR1a LTR ERV1 0 497 1 190 195 0 0 chr15 1616136 1616177 -84079577 - MIR SINE MIR -50 212 172 1425 198 74 14 chr15 1616797 1617241 -84078513 - L1M4 LINE L1 -1495 5045 4575 990 265 86 23 chr15 1617378 1618208 -84077546 - L1MDa LINE L1 -3257 3283 2394 305 256 108 77 chr15 1618351 1618546 -84077208 - L1M4 LINE L1 -1481 4665 4465 261 275 69 47 chr15 1618576 1618940 -84076814 - L1M4 LINE L1 -1716 4430 4059 4810 159 44 12 chr15 1619149 1619641 -84076113 - L1MA7 LINE L1 0 6291 5816 225 0 0 0 chr15 1619641 1619666 -84076088 + (TG)n Simple_repeat Simple_repeat 2 26 0 4810 159 44 12 chr15 1619666 1620364 -84075390 - L1MA7 LINE L1 -475 5816 5064 1920 176 40 0 chr15 1620366 1620631 -84075123 - L1P LINE L1 -1470 4676 4388 333 0 0 0 chr15 1620631 1620668 -84075086 + (TG)n Simple_repeat Simple_repeat 1 37 0 1920 176 40 0 chr15 1620668 1620799 -84074955 - L1P LINE L1 -1758 4388 4264 331 298 119 23 chr15 1620887 1621105 -84074649 - L1M4 LINE L1 -3229 2917 2679 29 84 0 0 chr15 1622738 1622809 -84072945 + AT_rich Low_complexity Low_complexity 1 71 0 239 331 61 14 chr15 1623553 1623701 -84072053 - MIR SINE MIR -57 205 51 2046 138 0 10 chr15 1624988 1625279 -84070475 + AluSx SINE Alu 1 288 -24 21 82 0 0 chr15 1625443 1625492 -84070262 + AT_rich Low_complexity Low_complexity 1 49 0 3621 165 90 4 chr15 1625579 1626300 -84069454 - L1PA8 LINE L1 0 6172 5390 3296 256 23 13 chr15 1626300 1627342 -84068412 + L1P LINE L1 1067 2118 -4028 1703 184 31 0 chr15 1627342 1627630 -84068124 - AluJb SINE Alu -13 299 3 395 290 83 5 chr15 1628318 1628535 -84067219 - L1ME3A LINE L1 -181 5989 5756 285 248 124 0 chr15 1628555 1628676 -84067078 - L1ME3A LINE L1 -474 5696 5561 3397 198 62 22 chr15 1628708 1629936 -84065818 - L1MB4 LINE L1 0 6180 4903 254 235 15 83 chr15 1630035 1630167 -84065587 - L1M2 LINE L1 -762 5404 5312 583 309 87 37 chr15 1630206 1630504 -84065250 - L1ME3A LINE L1 -933 5213 4901 29 84 0 0 chr15 1630720 1630791 -84064963 + AT_rich Low_complexity Low_complexity 1 71 0 654 313 85 20 chr15 1630792 1631369 -84064385 - L1ME3A LINE L1 -1780 4366 3828 2550 135 14 36 chr15 1631369 1631813 -84063941 + Tigger2a DNA MER2_type 1 434 0 654 313 85 20 chr15 1631813 1632254 -84063500 - L1ME3A LINE L1 -2318 3828 3281 2690 13 16 0 chr15 1632285 1632600 -84063154 - L1PA2 LINE L1 -2 6153 5834 229 278 44 44 chr15 1632882 1632972 -84062782 + MLT1H LTR MaLR 114 203 -346 311 172 21 97 chr15 1633188 1633325 -84062429 + MLT1H1 LTR MaLR 439 529 -26 298 340 21 14 chr15 1633528 1633672 -84062082 + MLT-int LTR MaLR 382 526 -1209 339 281 24 85 chr15 1633863 1634027 -84061727 - MIR3 SINE MIR -30 178 25 4218 167 50 11 chr15 1635179 1636028 -84059726 - L1MC1 LINE L1 0 6333 5452 204 122 0 0 chr15 1636695 1636736 -84059018 + (A)n Simple_repeat Simple_repeat 1 41 0 36938 39 4 0 chr15 1636921 1642423 -84053331 - L1PA4 LINE L1 -3 6152 632 208 296 120 28 chr15 1642587 1642695 -84053059 + MIR SINE MIR 90 207 -55 750 144 17 0 chr15 1642697 1642815 -84052939 - FRAM SINE Alu -14 162 43 1931 108 41 10 chr15 1643938 1644233 -84051521 + AluSx SINE Alu 1 304 -8 308 306 37 96 chr15 1644273 1644544 -84051210 - HAL1b LINE L1 -43 1305 1051 324 264 138 54 chr15 1644713 1645103 -84050651 - HAL1b LINE L1 -509 839 417 653 267 58 97 chr15 1645164 1645546 -84050208 - HAL1 LINE L1 -1391 1116 750 448 250 33 8 chr15 1646136 1646256 -84049498 + MLT1E1 LTR MaLR 5 127 -527 500 275 174 30 chr15 1646294 1646599 -84049155 + MLT1E1 LTR MaLR 305 653 -1 10357 229 76 14 chr15 1647056 1647917 -84047837 - L1PA16 LINE L1 -5 7599 6793 1499 167 50 56 chr15 1647917 1648294 -84047460 + THE1C LTR MaLR 1 375 0 10357 229 76 14 chr15 1648294 1652441 -84043313 - L1PA16 LINE L1 -811 6793 2271 296 296 10 10 chr15 1652761 1652859 -84042895 - L1PA16 LINE L1 -5399 2182 2085 788 375 19 19 chr15 1653000 1653586 -84042168 - L1PA16 LINE L1 -6201 1373 788 255 280 48 48 chr15 1654495 1654575 -84041179 + L1ME2 LINE L1 1061 1140 -5276 2274 99 10 0 chr15 1654575 1654877 -84040877 + AluSg SINE Alu 1 305 -5 255 280 48 48 chr15 1654877 1655089 -84040665 + L1ME2 LINE L1 1139 1353 -5063 346 305 65 41 chr15 1655107 1655370 -84040384 + L1ME2 LINE L1 1224 1442 -4882 1891 123 0 0 chr15 1655640 1655901 -84039853 + AluSq SINE Alu 1 261 -52 28 71 0 0 chr15 1655902 1655958 -84039796 + AT_rich Low_complexity Low_complexity 1 56 0 27 49 0 0 chr15 1656014 1656055 -84039699 + AT_rich Low_complexity Low_complexity 1 41 0 507 112 0 82 chr15 1656071 1656169 -84039585 - L1MB3 LINE L1 -41 6142 6053 1826 178 0 7 chr15 1656185 1656483 -84039271 + AluJo SINE Alu 1 296 -16 654 176 8 16 chr15 1656508 1656633 -84039121 - FLAM_A SINE Alu -9 124 1 1957 193 20 31 chr15 1656634 1657089 -84038665 - L1MB3 LINE L1 -118 6065 5616 1870 148 65 0 chr15 1657150 1657440 -84038314 - AluSx SINE Alu -3 309 1 341 198 16 95 chr15 1658516 1658613 -84037141 - MER96B DNA MER1_type? -34 383 297 2163 124 10 0 chr15 1658613 1658920 -84036834 + AluSx SINE Alu 1 310 -2 341 198 16 95 chr15 1658920 1658948 -84036806 - MER96B DNA MER1_type? -120 297 268 282 29 0 0 chr15 1658949 1658984 -84036770 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 1477 157 19 38 chr15 1658993 1659254 -84036500 - AluJo SINE Alu -56 256 1 822 290 41 0 chr15 1659297 1659518 -84036236 + MIR SINE MIR 13 242 -20 2282 96 0 0 chr15 1660010 1660301 -84035453 + AluSg SINE Alu 3 293 -17 1825 152 4 11 chr15 1660351 1660628 -84035126 + AluJo SINE Alu 1 275 -37 280 106 43 0 chr15 1660629 1660676 -84035078 + Alu SINE Alu 247 295 -7 385 197 68 8 chr15 1661397 1661514 -84034240 + L2 LINE L2 2360 2483 -831 671 155 0 14 chr15 1661522 1661664 -84034090 + C-rich Low_complexity Low_complexity 1 140 0 306 242 77 90 chr15 1662220 1662691 -84033063 + L1ME2 LINE L1 2001 6312 -132 2207 114 13 0 chr15 1662752 1663058 -84032696 + AluSg SINE Alu 1 310 0 638 235 47 35 chr15 1663480 1663650 -84032104 + MIR SINE MIR 69 240 -22 415 294 89 81 chr15 1663657 1664297 -84031457 + L1M2 LINE L1 451 1095 -5754 272 291 12 23 chr15 1665583 1665669 -84030085 + GA-rich Low_complexity Low_complexity 6 90 0 1462 175 111 43 chr15 1665842 1666213 -84029541 - MSTD LTR MaLR 0 396 1 821 122 0 0 chr15 1666628 1666743 -84029011 + AluSg/x SINE Alu 186 300 -10 4957 92 63 11 chr15 1666743 1667437 -84028317 + THE1C-int LTR MaLR 851 1580 0 1019 98 7 14 chr15 1667437 1667580 -84028174 + THE1C LTR MaLR 1 142 -233 1649 122 4 4 chr15 1667581 1667818 -84027936 + AluJo SINE Alu 76 312 0 1708 154 31 35 chr15 1667822 1668002 -84027752 + MLT1D LTR MaLR 180 360 -145 2316 96 0 0 chr15 1668002 1668304 -84027450 + AluY SINE Alu 1 302 -9 1708 154 31 35 chr15 1668304 1668441 -84027313 + MLT1D LTR MaLR 360 496 -9 2165 108 21 0 chr15 1668690 1668978 -84026776 + AluSx SINE Alu 1 294 -18 302 220 128 0 chr15 1669601 1669710 -84026044 + MIR SINE MIR 60 182 -80 180 259 19 0 chr15 1669889 1669943 -84025811 + MIR SINE MIR 30 84 -124 385 133 66 18 chr15 1670383 1670549 -84025205 + (CA)n Simple_repeat Simple_repeat 2 175 0 462 142 40 28 chr15 1670604 1670780 -84024974 + (CA)n Simple_repeat Simple_repeat 1 178 0 356 93 59 42 chr15 1670843 1670961 -84024793 + (TG)n Simple_repeat Simple_repeat 1 120 0 251 281 24 72 chr15 1671108 1671275 -84024479 + L1MC4 LINE L1 7883 8041 -1 234 266 31 0 chr15 1671436 1671500 -84024254 + MIR SINE MIR 79 144 -118 305 303 20 79 chr15 1671620 1671684 -84024070 - MER5A DNA MER1_type 0 189 123 1921 124 32 3 chr15 1671684 1671966 -84023788 + AluSx SINE Alu 1 290 -22 305 303 20 79 chr15 1671966 1672053 -84023701 - MER5A DNA MER1_type -66 123 47 2653 11 0 0 chr15 1673822 1674104 -84021650 - AluY SINE Alu -29 282 1 33 0 0 0 chr15 1675472 1675505 -84020249 + AT_rich Low_complexity Low_complexity 1 33 0 461 273 80 45 chr15 1675522 1676082 -84019672 + L1M4 LINE L1 3125 3704 -2442 3888 196 68 17 chr15 1676082 1677036 -84018718 - L1 LINE L1 -1023 5123 4121 * 5032 150 62 6 chr15 1677030 1677936 -84017818 + L1MA7 LINE L1 5334 6290 -1 2090 315 116 16 chr15 1677935 1679011 -84016743 + L1M4 LINE L1 3682 4865 -1281 * 1571 96 5 0 chr15 1679012 1679266 -84016488 + AluSg/x SINE Alu 81 335 0 464 291 11 22 chr15 1679302 1679481 -84016273 - MIR SINE MIR -1 261 85 2151 123 0 7 chr15 1679556 1679857 -84015897 + AluY SINE Alu 3 301 -10 2069 149 0 0 chr15 1679864 1680172 -84015582 + AluSx SINE Alu 1 308 -4 1974 124 11 3 chr15 1683457 1683740 -84012014 + AluSq SINE Alu 9 293 -20 23 33 0 0 chr15 1684263 1684293 -84011461 + AT_rich Low_complexity Low_complexity 1 30 0 348 281 74 35 chr15 1684569 1684800 -84010954 - MIR SINE MIR -7 255 16 404 253 10 10 chr15 1687508 1687607 -84008147 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr15 1688693 1688721 -84007033 + AT_rich Low_complexity Low_complexity 1 28 0 1696 143 0 104 chr15 1689626 1689961 -84005793 + AluSx SINE Alu 2 301 -11 566 157 0 0 chr15 1691610 1691699 -84004055 - AluJ/FLAM SINE Alu -222 90 2 622 132 0 0 chr15 1691924 1692015 -84003739 - FLAM_C SINE Alu -20 123 33 1055 39 0 0 chr15 1692015 1692143 -84003611 + L1PA4 LINE L1 6027 6154 -1 1406 180 32 18 chr15 1692479 1692757 -84002997 - AluJo SINE Alu -30 282 1 2094 109 7 14 chr15 1693047 1693331 -84002423 - AluJb SINE Alu -7 305 24 2336 110 0 0 chr15 1693628 1693928 -84001826 - AluSx SINE Alu -12 300 1 264 214 36 12 chr15 1694622 1694706 -84001048 + (TCTCTG)n Simple_repeat Simple_repeat 5 90 0 723 189 0 8 chr15 1695241 1695373 -84000381 + FLAM_C SINE Alu 1 131 -2 2398 85 0 19 chr15 1695431 1695748 -84000006 + AluY SINE Alu 1 311 0 2058 113 28 3 chr15 1695970 1696261 -83999493 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 1696540 1696563 -83999191 + AT_rich Low_complexity Low_complexity 1 23 0 216 319 132 0 chr15 1696603 1696694 -83999060 - L2 LINE L2 -2 3270 3168 2270 102 16 0 chr15 1696879 1697182 -83998572 + AluY SINE Alu 1 308 -3 2350 102 0 0 chr15 1697659 1697963 -83997791 + AluSx SINE Alu 1 304 -8 570 173 7 13 chr15 1698134 1698284 -83997470 + (TGGA)n Simple_repeat Simple_repeat 4 152 0 1079 205 157 40 chr15 1698456 1698831 -83996923 - MLT1C LTR MaLR -43 424 6 303 187 99 22 chr15 1699006 1699097 -83996657 - MIR SINE MIR -61 147 50 1866 163 10 0 chr15 1699221 1699510 -83996244 - AluJb SINE Alu -20 292 1 608 158 0 0 chr15 1699930 1700025 -83995729 - FLAM_A SINE Alu -32 110 16 406 236 57 0 chr15 1700658 1700781 -83994973 - MIR SINE MIR -108 154 25 181 79 0 53 chr15 1701237 1701275 -83994479 + (CCG)n Simple_repeat Simple_repeat 2 37 0 205 180 39 62 chr15 1701645 1701773 -83993981 + (CCCG)n Simple_repeat Simple_repeat 2 126 0 * 299 224 7 48 chr15 1701688 1701835 -83993919 + C-rich Low_complexity Low_complexity 3 143 0 24 0 0 0 chr15 1701835 1701859 -83993895 + GC_rich Low_complexity Low_complexity 1 24 0 243 297 11 22 chr15 1703181 1703272 -83992482 + (TG)n Simple_repeat Simple_repeat 1 90 0 275 236 114 24 chr15 1704380 1704503 -83991251 + MIR SINE MIR 72 205 -57 1872 159 0 3 chr15 1705140 1705429 -83990325 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr15 1705429 1705450 -83990304 + AT_rich Low_complexity Low_complexity 1 21 0 1562 236 63 5 chr15 1705856 1706283 -83989471 - L1MB7 LINE L1 0 6184 5733 195 42 0 0 chr15 1707287 1707311 -83988443 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 1474 226 58 0 chr15 1707381 1707709 -83988045 - MER7A DNA MER2_type -1 345 1 240 35 0 0 chr15 1708349 1708378 -83987376 + (T)n Simple_repeat Simple_repeat 1 29 0 332 257 203 51 chr15 1710103 1710418 -83985336 - L1MB7 LINE L1 -2145 5663 5301 2208 102 0 49 chr15 1710419 1710743 -83985011 - AluSx SINE Alu -4 308 1 2686 86 25 171 chr15 1711177 1711737 -83984017 - THE1C-int LTR MaLR -1102 478 1 1751 116 99 63 chr15 1711737 1711785 -83983969 - THE1C LTR MaLR 0 375 330 2273 95 3 0 chr15 1711785 1712119 -83983635 - AluY SINE Alu 0 335 1 2374 87 3 3 chr15 1712120 1712420 -83983334 - AluY SINE Alu -11 300 1 1751 116 99 63 chr15 1712420 1712730 -83983024 - THE1C LTR MaLR -44 331 1 843 180 0 62 chr15 1712730 1712748 -83983006 - AluJo SINE Alu -161 151 133 2354 90 0 3 chr15 1712748 1713048 -83982706 - AluY SINE Alu -12 299 1 2061 143 0 3 chr15 1713048 1713348 -83982406 - AluSx SINE Alu -12 300 1 843 180 0 62 chr15 1713348 1713489 -83982265 - AluJo SINE Alu -177 135 1 662 139 35 9 chr15 1713489 1713604 -83982150 - MLT1D LTR MaLR -387 118 1 242 276 198 0 chr15 1713690 1713805 -83981949 + Charlie7 DNA MER1_type 29 166 -2446 304 275 24 0 chr15 1713805 1713925 -83981829 - LTR50 LTR ERVL 0 795 402 956 271 85 48 chr15 1714001 1714056 -83981698 + Charlie7 DNA MER1_type 220 271 -2341 1811 171 0 10 chr15 1714056 1714360 -83981394 - AluJo SINE Alu -8 304 4 956 271 85 48 chr15 1714360 1714788 -83980966 + Charlie7 DNA MER1_type 271 721 -1891 412 261 5 72 chr15 1714787 1714837 -83980917 + Charlie7 DNA MER1_type 2420 2472 -140 * 2196 114 7 0 chr15 1714837 1715127 -83980627 + AluSx SINE Alu 1 292 -20 412 261 5 72 chr15 1715127 1715283 -83980471 + Charlie7 DNA MER1_type 2472 2612 0 2204 121 3 0 chr15 1715327 1715625 -83980129 + AluSq SINE Alu 1 299 -14 183 321 0 18 chr15 1715835 1715891 -83979863 - L2 LINE L2 -209 3063 3009 315 190 0 0 chr15 1715904 1715962 -83979792 - THE1A LTR MaLR -76 279 222 240 250 0 0 chr15 1715993 1716037 -83979717 + AluJ/monomer SINE Alu 1 44 -259 272 151 31 0 chr15 1716156 1716220 -83979534 + MIR SINE MIR 75 146 -62 320 294 0 12 chr15 1716970 1717055 -83978699 + MIR SINE MIR 5 88 -174 251 288 129 23 chr15 1717230 1717362 -83978392 - L1ME4a LINE L1 -38 6083 5938 411 252 64 9 chr15 1719625 1719752 -83976002 + MIR SINE MIR 34 173 -62 275 190 17 17 chr15 1720197 1720255 -83975499 - MLT1K LTR MaLR -8 580 523 28 29 0 0 chr15 1720260 1720295 -83975459 + AT_rich Low_complexity Low_complexity 1 35 0 2218 83 0 3 chr15 1720301 1720590 -83975164 - AluSq SINE Alu -25 288 1 485 200 147 74 chr15 1720591 1720781 -83974973 - MLT1K LTR MaLR -58 530 327 435 234 8 62 chr15 1720840 1720968 -83974786 + MLT1G LTR MaLR 93 213 -377 396 193 125 0 chr15 1720972 1721060 -83974694 + MLT1G LTR MaLR 471 569 -21 980 170 0 6 chr15 1721486 1721657 -83974097 + AluJb SINE Alu 121 290 -22 1905 155 0 13 chr15 1721660 1721976 -83973778 + AluSx SINE Alu 1 312 0 851 232 171 20 chr15 1722213 1722536 -83973218 - MLT1J LTR MaLR 0 493 139 2376 190 17 85 chr15 1722542 1723057 -83972697 - MER41D LTR ERV1 -22 535 61 2127 109 0 28 chr15 1723057 1723378 -83972376 - AluSq SINE Alu -1 312 1 2376 190 17 85 chr15 1723378 1723436 -83972318 - MER41D LTR ERV1 -496 61 1 500 259 30 15 chr15 1723436 1723571 -83972183 - MLT1J LTR MaLR -371 140 4 2011 90 54 0 chr15 1723651 1723930 -83971824 + AluY SINE Alu 1 294 -17 353 266 146 70 chr15 1723930 1724057 -83971697 + MIR SINE MIR 22 138 -124 1486 189 34 0 chr15 1724057 1724354 -83971400 - AluJo SINE Alu -5 307 1 373 221 110 31 chr15 1724355 1724518 -83971236 + MER104 DNA MER2_type 2 177 -3 353 266 146 70 chr15 1724518 1724587 -83971167 + MIR SINE MIR 137 235 -27 772 84 6 39 chr15 1724897 1725075 -83970679 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 518 152 5 33 chr15 1725136 1725320 -83970434 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 402 147 0 37 chr15 1725364 1725473 -83970281 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 914 258 119 12 chr15 1725504 1725923 -83969831 - MLT1C LTR MaLR -3 464 1 1758 154 0 14 chr15 1726690 1726975 -83968779 - AluJo SINE Alu -21 291 11 1720 252 89 19 chr15 1726994 1727557 -83968197 - MER20B DNA MER1_type -34 749 148 688 268 10 20 chr15 1727923 1728121 -83967633 + MIR SINE MIR 17 212 -50 2126 113 7 0 chr15 1728128 1728429 -83967325 - AluSp SINE Alu -10 303 1 1607 233 37 17 chr15 1728573 1729019 -83966735 - L1MB5 LINE L1 -58 6116 5665 203 276 181 9 chr15 1729082 1729187 -83966567 + MIR SINE MIR 31 153 -109 818 242 14 28 chr15 1729352 1729563 -83966191 - MER63A DNA MER1_type 0 210 3 285 286 164 21 chr15 1729797 1729937 -83965817 + MLT1L LTR MaLR 226 385 -230 1964 107 0 0 chr15 1730441 1730704 -83965050 + AluSc SINE Alu 16 278 -31 183 80 0 0 chr15 1730707 1730732 -83965022 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1038 126 16 33 chr15 1732170 1732352 -83963402 + AluJo SINE Alu 39 217 -95 266 152 0 0 chr15 1732353 1732404 -83963350 + AluJb SINE Alu 84 125 -177 1308 167 0 67 chr15 1732431 1732730 -83963024 + AluJo SINE Alu 7 285 -27 1946 117 0 0 chr15 1732754 1733028 -83962726 + AluSx SINE Alu 1 274 -38 306 0 0 0 chr15 1733447 1733481 -83962273 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 94 0 0 chr15 1733564 1733596 -83962158 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr15 1733681 1733716 -83962038 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 71 0 0 chr15 1733895 1733923 -83961831 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr15 1734012 1734053 -83961701 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr15 1734232 1734260 -83961494 + (TG)n Simple_repeat Simple_repeat 2 29 0 707 153 0 8 chr15 1734683 1734807 -83960947 + AluJo/FLAM SINE Alu 2 124 -188 2122 107 3 0 chr15 1734807 1735106 -83960648 - AluSx SINE Alu -12 300 1 1055 127 0 13 chr15 1735322 1735479 -83960275 - PABL_B LTR ERV1 0 667 513 231 175 62 0 chr15 1735609 1735664 -83960090 - Alu SINE Alu -253 50 1 1335 172 47 0 chr15 1735701 1735957 -83959797 + AluJo SINE Alu 30 297 -15 2017 132 0 0 chr15 1736233 1736537 -83959217 - AluSx SINE Alu -8 304 1 2171 103 0 10 chr15 1736749 1737059 -83958695 - AluSx SINE Alu -5 307 1 1815 137 0 0 chr15 1737216 1737500 -83958254 - AluSx SINE Alu -11 301 18 231 319 17 17 chr15 1737967 1738083 -83957671 + C-rich Low_complexity Low_complexity 4 119 0 5472 84 5 5 chr15 1738184 1738919 -83956835 + L1PA10 LINE L1 5425 6159 -9 1795 239 86 23 chr15 1739224 1739700 -83956054 - MER77 LTR ERV1 -36 569 64 236 184 224 31 chr15 1740556 1740654 -83955100 + MER103 DNA DNA 7 123 -43 486 300 33 42 chr15 1740786 1741026 -83954728 + MIR SINE MIR 13 250 -12 786 180 0 0 chr15 1741026 1741204 -83954550 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1956 137 0 0 chr15 1741827 1742126 -83953628 + AluSq SINE Alu 1 299 -14 198 287 0 0 chr15 1742631 1742718 -83953036 + G-rich Low_complexity Low_complexity 1 87 0 8725 119 16 2 chr15 1742824 1744621 -83951133 - L1P4 LINE L1 -350 5818 4002 283 291 73 24 chr15 1745005 1745156 -83950598 + MIR3 SINE MIR 4 159 -69 275 254 0 0 chr15 1745213 1745268 -83950486 - L2 LINE L2 -8 3264 3210 294 301 44 18 chr15 1745338 1745451 -83950303 + L1MC5 LINE L1 7798 7913 -48 1579 173 16 36 chr15 1745462 1745769 -83949985 - AluJo SINE Alu -11 301 1 334 291 82 6 chr15 1745772 1745930 -83949824 - MIR SINE MIR -59 203 34 447 19 0 0 chr15 1746443 1746495 -83949259 + (TG)n Simple_repeat Simple_repeat 2 53 0 267 203 0 0 chr15 1747533 1747592 -83948162 + (TG)n Simple_repeat Simple_repeat 1 59 0 291 333 51 7 chr15 1747679 1747817 -83947937 + L3 LINE CR1 235 378 -1199 389 259 105 49 chr15 1747872 1748119 -83947635 - L1MC4a LINE L1 -1642 6166 5906 185 266 125 0 chr15 1748130 1748194 -83947560 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr15 1748511 1748568 -83947186 + L2 LINE L2 3262 3311 -2 483 298 160 0 chr15 1749644 1749832 -83945922 + MIR SINE MIR 42 259 -3 238 243 186 0 chr15 1749947 1750017 -83945737 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr15 1750034 1750068 -83945686 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1277 218 19 16 chr15 1752634 1752951 -83942803 + MER65A LTR ERV1 1 318 -127 1038 294 59 54 chr15 1752952 1753596 -83942158 - MER89-int LTR ERV1 -1669 5132 4486 687 229 127 0 chr15 1754219 1754376 -83941378 - MER89-int LTR ERV1 -1594 5207 5031 256 313 88 33 chr15 1755494 1755734 -83940020 + L1MCb LINE L1 571 823 -5222 2317 71 0 3 chr15 1755837 1756134 -83939620 + AluY SINE Alu 1 296 -15 7029 37 6 0 chr15 1756192 1757024 -83938730 + L1PA5 LINE L1 5317 6153 -1 515 300 88 35 chr15 1759410 1759840 -83935914 - L1MC4a LINE L1 -612 5732 5280 259 247 43 0 chr15 1759850 1759943 -83935811 - L1MC4a LINE L1 -853 5293 5197 1144 299 39 29 chr15 1760096 1760717 -83935037 - L1MC3 LINE L1 -621 7164 6538 281 231 11 22 chr15 1760789 1760817 -83934937 + (TAGA)n Simple_repeat Simple_repeat 4 31 -62 186 43 0 0 chr15 1760817 1760840 -83934914 + (CATA)n Simple_repeat Simple_repeat 3 25 0 281 231 11 22 chr15 1760840 1760902 -83934852 + (TAGA)n Simple_repeat Simple_repeat 31 93 0 621 283 52 13 chr15 1761130 1761360 -83934394 - MER89-int LTR ERV1 -3076 3725 3487 1957 203 5 3 chr15 1761689 1762063 -83933691 - L1PA16 LINE L1 -290 5876 5502 409 214 0 0 chr15 1762062 1762146 -83933608 - L1P4 LINE L1 -581 5585 5502 * 509 146 0 0 chr15 1762145 1762227 -83933527 - L1P4 LINE L1 -581 5585 5504 2418 219 23 23 chr15 1762227 1763255 -83932499 - L1P4 LINE L1 -580 5586 4562 4620 254 40 19 chr15 1763261 1764774 -83930980 + L1P4 LINE L1 3001 4544 -1602 765 279 50 47 chr15 1764820 1765200 -83930554 - MER89-int LTR ERV1 -2111 4690 4310 675 317 28 41 chr15 1765198 1765561 -83930193 - MER89-int LTR ERV1 -2647 4154 3797 * 446 299 46 10 chr15 1765607 1765801 -83929953 - MER89-int LTR ERV1 -3095 3706 3506 368 136 0 0 chr15 1766387 1766446 -83929308 + Alu SINE Alu 242 300 -2 1749 155 0 0 chr15 1767971 1768248 -83927506 + AluSx SINE Alu 11 287 -25 1136 228 36 69 chr15 1769521 1769912 -83925842 + MLT1B LTR MaLR 2 379 -11 220 308 104 57 chr15 1770875 1771210 -83924544 - L2 LINE L2 -1648 1666 1316 381 250 37 63 chr15 1771283 1771456 -83924298 - L1M4c LINE L1 -4258 2475 1928 1475 230 22 0 chr15 1771457 1771774 -83923980 + MER7A DNA MER2_type 2 323 -23 1918 126 3 20 chr15 1771779 1772081 -83923673 - AluSx SINE Alu -15 297 1 524 318 30 35 chr15 1772131 1772499 -83923255 - L1M4c LINE L1 -4874 1779 1414 274 340 0 0 chr15 1772790 1772896 -83922858 + L1MCb LINE L1 726 831 -5214 404 152 0 29 chr15 1774341 1774446 -83921308 + (TG)n Simple_repeat Simple_repeat 2 103 0 593 269 73 53 chr15 1776188 1776732 -83919022 - L1MC/D LINE L1 -771 5375 5170 23 33 0 0 chr15 1776757 1776787 -83918967 + AT_rich Low_complexity Low_complexity 1 30 0 2077 278 92 14 chr15 1776898 1777769 -83917985 - L1MC3 LINE L1 -657 7128 6190 320 288 75 27 chr15 1777735 1778030 -83917724 + L1MC3 LINE L1 5904 6212 -1573 * 26 0 0 0 chr15 1778133 1778159 -83917595 + AT_rich Low_complexity Low_complexity 1 26 0 1755 102 102 0 chr15 1782140 1782406 -83913348 + AluSp SINE Alu 1 293 -20 22 35 0 0 chr15 1782498 1782527 -83913227 + AT_rich Low_complexity Low_complexity 1 29 0 264 30 0 0 chr15 1782599 1782632 -83913122 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 1782644 1782666 -83913088 + AT_rich Low_complexity Low_complexity 1 22 0 384 284 70 0 chr15 1783198 1783399 -83912355 - L1MD3 LINE L1 -11 7984 7770 308 276 86 0 chr15 1783718 1783870 -83911884 - L1MCa LINE L1 -3711 2715 2551 574 318 75 38 chr15 1783959 1784540 -83911214 - L1MCa LINE L1 -4236 2371 1680 309 228 30 30 chr15 1785612 1785713 -83910041 + L1ME LINE L1 5698 5798 -368 1229 286 101 14 chr15 1785782 1786417 -83909337 + L1PA13 LINE L1 529 1258 -5529 2364 168 21 9 chr15 1786420 1786844 -83908910 + L1PA13 LINE L1 1396 1824 -4963 * 2890 210 34 16 chr15 1786836 1787574 -83908180 + L1MA7 LINE L1 5541 6291 0 473 305 66 5 chr15 1787585 1787798 -83907956 + L1M4 LINE L1 5172 5397 -749 456 72 24 24 chr15 1787924 1788007 -83907747 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 222 37 0 0 chr15 1788009 1788036 -83907718 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 508 311 0 0 chr15 1788460 1788595 -83907159 + MER70B LTR ERVL 90 224 -354 327 271 211 12 chr15 1788633 1788880 -83906874 - L1MCa LINE L1 -4206 2220 1925 * 1471 164 21 0 chr15 1788872 1789159 -83906595 - L1 LINE L1 -1404 4742 4450 366 174 0 54 chr15 1789172 1789264 -83906490 + L1MA2 LINE L1 6218 6304 0 589 292 65 26 chr15 1789327 1789808 -83905946 + L1MC3 LINE L1 5254 6040 -160 672 305 38 0 chr15 1789946 1790159 -83905595 - HERVL74 LTR ERVL -3785 1900 1680 1924 130 0 17 chr15 1790745 1791038 -83904716 + AluSx SINE Alu 5 292 -20 301 232 0 0 chr15 1791041 1791097 -83904657 + L1MC4 LINE L1 6648 6703 -1339 1531 109 23 9 chr15 1791290 1791510 -83904244 + PABL_B LTR ERV1 445 667 0 2073 103 3 7 chr15 1791726 1792027 -83903727 + AluSx SINE Alu 1 300 -12 687 161 0 8 chr15 1792027 1792151 -83903603 - AluJo/FLAM SINE Alu -188 124 2 198 71 0 0 chr15 1792574 1792602 -83903152 + (CA)n Simple_repeat Simple_repeat 2 29 0 291 28 0 0 chr15 1792781 1792817 -83902937 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 94 0 0 chr15 1792904 1792936 -83902818 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr15 1793019 1793051 -83902703 + (CA)n Simple_repeat Simple_repeat 2 33 0 1946 117 0 0 chr15 1793470 1793744 -83902010 - AluSx SINE Alu -38 274 1 551 329 83 28 chr15 1793849 1794284 -83901470 + L1MCb LINE L1 114 572 -5473 2094 128 0 0 chr15 1796417 1796729 -83899025 - AluSx SINE Alu 0 312 1 461 291 41 67 chr15 1796799 1796874 -83898880 - L1MC/D LINE L1 -2069 5716 5641 2043 91 0 4 chr15 1796874 1797178 -83898576 + AluSg1 SINE Alu 6 308 0 461 291 41 67 chr15 1797178 1797445 -83898309 - L1MC/D LINE L1 -2144 5641 5382 1900 244 65 2 chr15 1797476 1797906 -83897848 + LTR32 LTR ERVL 15 471 0 945 299 19 23 chr15 1797924 1798458 -83897296 + HERVL32 LTR ERVL 19 590 -2828 1760 253 20 44 chr15 1798467 1799024 -83896730 + HERVL32 LTR ERVL 2309 2856 -562 1171 253 37 53 chr15 1799144 1799826 -83895928 + HERVL32 LTR ERVL 612 1326 -2092 * 3222 239 65 63 chr15 1799819 1800871 -83894883 + HERVL32 LTR ERVL 1627 2680 -738 1518 216 24 32 chr15 1800897 1801277 -83894477 + MLT1B LTR MaLR 14 390 0 1244 314 55 43 chr15 1802918 1803678 -83892076 + MER89-int LTR ERV1 3526 4294 -2507 1799 178 41 25 chr15 1804489 1804883 -83890871 - L1MA7 LINE L1 -25 6266 5867 644 49 0 0 chr15 1804889 1804970 -83890784 + L1M3 LINE L1 5389 5469 -865 1709 218 39 13 chr15 1804972 1805357 -83890397 - MSTD LTR MaLR -1 395 1 2226 244 150 55 chr15 1805372 1805723 -83890031 - MSTD-int LTR MaLR -17 1718 1402 5089 38 10 3 chr15 1805723 1806337 -83889417 + L1PA3 LINE L1 5538 6155 0 2226 244 150 55 chr15 1806337 1806787 -83888967 - MSTD-int LTR MaLR -333 1402 841 1601 260 30 2 chr15 1806848 1807279 -83888475 - MSTD-int LTR MaLR -1291 444 2 1439 209 38 62 chr15 1807281 1807654 -83888100 - MSTD LTR MaLR 0 396 33 1942 121 4 0 chr15 1811170 1811473 -83884281 - AluSx SINE Alu 0 304 1 624 255 1 10 chr15 1812198 1812380 -83883374 - L1MB1 LINE L1 0 6168 6008 2465 220 39 15 chr15 1812410 1813049 -83882705 - L1 LINE L1 -1888 4258 3601 1859 89 4 0 chr15 1813049 1813323 -83882431 + AluY SINE Alu 38 312 0 500 208 78 13 chr15 1813345 1813499 -83882255 - L1 LINE L1 -2645 3501 3338 359 280 59 51 chr15 1813804 1814040 -83881714 + L1MC5 LINE L1 7530 7767 -194 722 274 145 13 chr15 1814171 1814551 -83881203 + MLT1D LTR MaLR 1 430 -75 3999 258 68 25 chr15 1814561 1816881 -83878873 + HERVL74 LTR ERVL 1196 3652 -2033 527 236 51 67 chr15 1816885 1817063 -83878691 + HERVL74 LTR ERVL 3890 4064 -1621 1100 291 43 39 chr15 1817088 1817712 -83878042 + HERVL74 LTR ERVL 4611 5268 -417 613 268 24 24 chr15 1817730 1817935 -83877819 + HERVL74 LTR ERVL 5393 5597 -88 831 285 43 32 chr15 1817993 1818340 -83877414 + MER74B LTR ERVL 60 410 -212 1332 313 93 31 chr15 1819830 1820794 -83874960 - L1M4b LINE L1 -5814 1045 22 457 308 73 40 chr15 1820808 1821136 -83874618 - L1MCa LINE L1 -4761 1665 1327 11074 203 38 29 chr15 1821325 1824684 -83871070 - L1PA13 LINE L1 -3424 3373 1 2166 209 41 16 chr15 1824690 1825207 -83870547 + L1MC3 LINE L1 5580 6109 -1676 7366 202 41 8 chr15 1825230 1827863 -83867891 + L1MA9 LINE L1 3356 6081 -231 435 221 31 0 chr15 1827865 1827992 -83867762 + L1MA9 LINE L1 6180 6310 -2 1351 204 18 0 chr15 1828015 1828353 -83867401 + L1 LINE L1 4328 4671 -1475 904 290 87 8 chr15 1828353 1828732 -83867022 - L2 LINE L2 -1564 1750 1342 21 36 0 0 chr15 1828803 1828831 -83866923 + AT_rich Low_complexity Low_complexity 1 28 0 572 406 31 16 chr15 1829587 1830149 -83865605 + L2 LINE L2 2722 3292 -21 196 300 38 38 chr15 1832016 1832096 -83863658 - MIR3 SINE MIR -3 205 126 2234 74 3 14 chr15 1832743 1833070 -83862684 + AluY SINE Alu 1 324 0 254 73 24 0 chr15 1833201 1833242 -83862512 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 223 302 16 0 chr15 1833418 1833481 -83862273 + (CA)n Simple_repeat Simple_repeat 1 64 0 2132 181 26 16 chr15 1833632 1834062 -83861692 - Tigger2a DNA MER2_type 0 434 1 279 299 0 59 chr15 1834891 1835078 -83860676 + CT-rich Low_complexity Low_complexity 3 178 0 185 327 0 0 chr15 1835702 1835757 -83859997 + MIR3 SINE MIR 123 177 -31 254 287 36 28 chr15 1835833 1835973 -83859781 + MIR SINE MIR 60 197 -65 279 54 0 0 chr15 1837281 1837318 -83858436 + (TA)n Simple_repeat Simple_repeat 1 37 0 29255 105 8 20 chr15 1837451 1842919 -83852835 + L1PA7 LINE L1 1 5487 -982 258 56 0 0 chr15 1842919 1842955 -83852799 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 29255 105 8 20 chr15 1842955 1843905 -83851849 + L1PA7 LINE L1 5487 6446 -23 813 213 64 13 chr15 1843905 1844140 -83851614 + MER96B DNA MER1_type? 148 394 -23 33 80 0 0 chr15 1844380 1844455 -83851299 + AT_rich Low_complexity Low_complexity 1 75 0 222 370 0 0 chr15 1844598 1844698 -83851056 + GA-rich Low_complexity Low_complexity 3 102 0 2939 121 11 6 chr15 1844785 1845255 -83850499 + MER84 LTR ERVI 36 507 0 953 105 0 25 chr15 1845764 1845926 -83849828 + L1P4 LINE L1 5333 5490 -671 2558 47 0 19 chr15 1845926 1846243 -83849511 + AluY SINE Alu 1 311 0 1765 265 99 42 chr15 1846433 1847001 -83848753 - L1M4 LINE L1 -1822 4324 3790 2285 84 7 0 chr15 1847001 1847298 -83848456 + AluY SINE Alu 1 299 -12 1765 265 99 42 chr15 1847298 1847872 -83847882 - L1M4 LINE L1 -2356 3790 3117 * 3103 157 51 16 chr15 1847871 1848690 -83847064 - L1PA15 LINE L1 -324 5841 4984 752 41 0 10 chr15 1848690 1848787 -83846967 + L1PA4 LINE L1 6057 6152 -3 3103 157 51 16 chr15 1848787 1849102 -83846652 - L1PA15 LINE L1 -1181 4984 4681 10757 241 24 40 chr15 1849103 1853435 -83842319 - L1PA12 LINE L1 -816 6768 2554 5908 231 31 15 chr15 1853460 1855186 -83840568 + L1PA15 LINE L1 2143 3896 -2250 1594 196 43 0 chr15 1855175 1855547 -83840207 + L1PA15 LINE L1 4846 5233 -913 * 1095 99 13 0 chr15 1855549 1855700 -83840054 + AluSc SINE Alu 150 302 -7 2279 101 0 3 chr15 1855710 1856006 -83839748 + AluSq SINE Alu 1 295 -18 4841 127 6 10 chr15 1856007 1856818 -83838936 + L1PA15 LINE L1 5357 6164 -1 1214 273 11 5 chr15 1856865 1857232 -83838522 - L1PA12 LINE L1 -5025 2556 2188 777 286 107 56 chr15 1857470 1859024 -83836730 - L1PA12 LINE L1 -5399 2182 22 204 140 40 20 chr15 1859245 1859295 -83836459 + T-rich Low_complexity Low_complexity 5 55 0 1658 220 80 78 chr15 1859971 1860608 -83835146 + LTR9B LTR ERV1 7 644 0 401 158 29 0 chr15 1860793 1860932 -83834822 + (TA)n Simple_repeat Simple_repeat 1 143 0 43 0 0 0 chr15 1860937 1860980 -83834774 + AT_rich Low_complexity Low_complexity 1 43 0 194 379 107 12 chr15 1861108 1861277 -83834477 + L2 LINE L2 2725 2909 -405 252 258 11 75 chr15 1861289 1861382 -83834372 + L2 LINE L2 3184 3270 -2 311 280 57 45 chr15 1862730 1862887 -83832867 + L1ME1 LINE L1 5998 6156 -10 1849 154 32 0 chr15 1863623 1863908 -83831846 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr15 1864876 1864899 -83830855 + AT_rich Low_complexity Low_complexity 1 23 0 249 328 0 35 chr15 1864966 1865140 -83830614 + T-rich Low_complexity Low_complexity 2 169 0 39 22 0 0 chr15 1867309 1867355 -83828399 + AT_rich Low_complexity Low_complexity 1 46 0 729 307 137 30 chr15 1867914 1868638 -83827116 - L2 LINE L2 -34 3279 2474 28 79 0 0 chr15 1868708 1868771 -83826983 + AT_rich Low_complexity Low_complexity 1 63 0 1713 268 39 40 chr15 1868930 1869609 -83826145 - L1ME2 LINE L1 -16 6148 5465 1740 191 148 41 chr15 1869612 1870100 -83825654 + MER74A LTR ERVL 19 558 0 442 194 31 0 chr15 1870614 1870712 -83825042 - L1ME2 LINE L1 -744 5418 5318 548 244 39 17 chr15 1870754 1870984 -83824770 - L1ME2 LINE L1 -916 5230 4996 1819 164 13 0 chr15 1871096 1871401 -83824353 + AluSx SINE Alu 1 309 -3 3131 167 22 4 chr15 1871527 1872067 -83823687 + MER44D DNA MER2_type 1 605 0 385 226 11 11 chr15 1872067 1872152 -83823602 + L1MC4 LINE L1 6616 6703 -1339 180 0 0 0 chr15 1872152 1872172 -83823582 + (TG)n Simple_repeat Simple_repeat 2 21 0 26 82 0 0 chr15 1872529 1872590 -83823164 + AT_rich Low_complexity Low_complexity 1 61 0 706 203 120 52 chr15 1873082 1873274 -83822480 - MER20 DNA MER1_type -2 217 13 23 0 0 0 chr15 1877031 1877054 -83818700 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr15 1878617 1878672 -83817082 + (CA)n Simple_repeat Simple_repeat 1 55 0 376 289 141 34 chr15 1878880 1879023 -83816731 - L2 LINE L2 0 3313 3187 223 27 27 27 chr15 1879023 1879060 -83816694 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 376 289 141 34 chr15 1879060 1879179 -83816575 - L2 LINE L2 -126 3187 3023 416 327 194 32 chr15 1879330 1879473 -83816281 - L2 LINE L2 0 3313 3195 223 27 27 27 chr15 1879473 1879510 -83816244 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 416 327 194 32 chr15 1879510 1879921 -83815833 - L2 LINE L2 -118 3195 2653 432 0 0 0 chr15 1879931 1879979 -83815775 + (TA)n Simple_repeat Simple_repeat 2 49 0 275 259 89 27 chr15 1880657 1880769 -83814985 + MIR3 SINE MIR 82 200 -8 270 242 17 39 chr15 1881178 1881356 -83814398 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 298 90 51 13 chr15 1881358 1881436 -83814318 + (TA)n Simple_repeat Simple_repeat 2 82 0 1764 145 28 3 chr15 1881484 1881766 -83813988 - MER72 LTR ERV1 0 722 434 1685 191 3 7 chr15 1881768 1882067 -83813687 - MER72 LTR ERV1 -420 302 5 570 206 59 7 chr15 1882077 1882213 -83813541 + MIR SINE MIR 45 187 -75 307 318 100 0 chr15 1882472 1882582 -83813172 + L2 LINE L2 3152 3272 0 22447 28 0 0 chr15 1882930 1886409 -83809345 + L1PA2 LINE L1 2702 6180 0 2340 193 27 27 chr15 1887610 1888127 -83807627 + L1MA9 LINE L1 5267 5783 -385 671 336 47 26 chr15 1888127 1888555 -83807199 + L1MA9 LINE L1 1360 1796 -5700 969 268 113 95 chr15 1888654 1889644 -83806110 - MER52A LTR ERV1 0 1755 630 11847 218 67 27 chr15 1889706 1894375 -83801379 + L1MA9 LINE L1 2061 7021 -710 2411 128 8 31 chr15 1894375 1894759 -83800995 + THE1C LTR MaLR 1 375 0 11847 218 67 27 chr15 1894759 1895501 -83800253 + L1MA9 LINE L1 7021 7731 0 306 98 0 20 chr15 1895496 1895547 -83800207 + L1MA9 LINE L1 5771 5820 -348 * 2028 157 31 19 chr15 1895553 1895968 -83799786 + L1MA9 LINE L1 5892 6311 -1 425 217 33 0 chr15 1896481 1896573 -83799181 + U13 snRNA snRNA 1 95 -9 775 317 117 14 chr15 1896632 1897213 -83798541 - HAL1 LINE L1 -726 1781 1141 435 280 45 91 chr15 1897739 1897982 -83797772 - HAL1 LINE L1 -2185 322 91 204 216 39 0 chr15 1899238 1899289 -83796465 + A-rich Low_complexity Low_complexity 4 56 0 24 0 0 0 chr15 1900980 1901004 -83794750 + AT_rich Low_complexity Low_complexity 1 24 0 459 325 74 12 chr15 1901733 1901896 -83793858 + MIR SINE MIR 20 192 -70 439 263 109 6 chr15 1902112 1902268 -83793486 - MIR SINE MIR 0 262 91 960 144 0 0 chr15 1902434 1902580 -83793174 - AluSg/x SINE Alu -23 289 144 1074 269 13 8 chr15 1902769 1903007 -83792747 - MIR SINE MIR -22 240 2 734 275 68 13 chr15 1903737 1903973 -83791781 + MIR SINE MIR 13 261 -1 182 363 99 0 chr15 1905192 1905283 -83790471 - L2 LINE L2 0 3272 3173 232 318 47 54 chr15 1905382 1905511 -83790243 - MIR3 SINE MIR -31 177 50 215 61 30 0 chr15 1905903 1905936 -83789818 + (TC)n Simple_repeat Simple_repeat 1 34 0 404 200 27 36 chr15 1906563 1906673 -83789081 + L1MA8 LINE L1 6180 6288 -3 481 189 147 32 chr15 1906936 1907126 -83788628 + L1MC3 LINE L1 7574 7785 0 2389 144 100 4 chr15 1907214 1907664 -83788090 - L1PA16 LINE L1 -2 6164 5672 420 49 98 0 chr15 1907682 1907804 -83787950 + (TA)n Simple_repeat Simple_repeat 1 134 0 2051 204 13 7 chr15 1907842 1908531 -83787223 - L1PA16 LINE L1 -534 5632 4939 * 3016 215 12 19 chr15 1908530 1909301 -83786453 + L1 LINE L1 3061 3825 -2321 2075 113 21 0 chr15 1910223 1910514 -83785240 + AluSq SINE Alu 1 297 -16 1298 139 22 0 chr15 1911176 1911399 -83784355 + L1MA4 LINE L1 6070 6297 -3 2036 126 14 3 chr15 1911458 1911752 -83784002 + AluSx SINE Alu 1 297 -15 387 0 0 0 chr15 1912179 1912222 -83783532 + (TG)n Simple_repeat Simple_repeat 1 43 0 213 65 0 0 chr15 1914856 1914887 -83780867 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 303 351 54 30 chr15 1915150 1915318 -83780436 + MIR SINE MIR 19 190 -72 403 257 68 24 chr15 1918737 1918943 -83776811 - LTR37B LTR ERV1 0 468 254 457 92 77 0 chr15 1918943 1919008 -83776746 + L1PA13 LINE L1 6088 6157 -6 248 211 0 18 chr15 1919056 1919113 -83776641 - LTR37B LTR ERV1 -221 247 192 5046 140 19 8 chr15 1919265 1920063 -83775691 - L1MA2 LINE L1 0 6304 5498 3692 35 12 5 chr15 1920163 1920592 -83775162 + L1PA3 LINE L1 5723 6154 -1 1474 277 63 39 chr15 1920593 1921545 -83774209 + L1MA3 LINE L1 2265 3403 -4163 2762 247 38 23 chr15 1921686 1922557 -83773197 + L1P LINE L1 2790 3673 -2473 3642 203 60 5 chr15 1922560 1923431 -83772323 + L1MA3 LINE L1 4418 5336 -2229 * 6489 131 31 1 chr15 1923425 1924505 -83771249 + L1MA3 LINE L1 6614 7724 0 3940 190 51 29 chr15 1924499 1925153 -83770601 + L1 LINE L1 3026 3711 -2435 * 216 0 0 0 chr15 1925153 1925177 -83770577 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3940 190 51 29 chr15 1925177 1925517 -83770237 + L1 LINE L1 3711 4042 -2104 1853 204 25 32 chr15 1925519 1925926 -83769828 + MSTB LTR MaLR 23 426 0 713 296 16 11 chr15 1926030 1926216 -83769538 + L2 LINE L2 2889 3075 -238 684 177 0 0 chr15 1926219 1926332 -83769422 + L1MA7 LINE L1 5997 6109 -182 1088 191 123 52 chr15 1926352 1926661 -83769093 + MER2 DNA MER2_type 12 342 -3 645 150 78 7 chr15 1926663 1926816 -83768938 + L1MA8 LINE L1 6107 6270 -21 371 275 69 61 chr15 1927102 1927349 -83768405 + L2 LINE L2 3065 3313 0 36 0 0 0 chr15 1927352 1927388 -83768366 + AT_rich Low_complexity Low_complexity 1 36 0 7816 162 25 4 chr15 1927749 1929185 -83766569 - L1 LINE L1 -883 5263 3798 2322 132 3 23 chr15 1929185 1929571 -83766183 + L1MA2 LINE L1 5926 6304 0 2181 113 0 28 chr15 1929592 1930099 -83765655 + AluSq SINE Alu 1 313 0 419 167 11 0 chr15 1930117 1930207 -83765547 + GA-rich Low_complexity Low_complexity 2 92 0 7779 179 43 18 chr15 1930215 1932109 -83763645 + L1M2 LINE L1 3663 5620 -680 186 216 0 0 chr15 1932120 1932157 -83763597 + L2 LINE L2 3277 3313 0 827 322 77 53 chr15 1936651 1937383 -83758371 + ERVL LTR ERVL 3603 4351 -1413 184 290 87 0 chr15 1937791 1937860 -83757894 + MER5A DNA MER1_type 2 76 -113 2926 277 21 39 chr15 1937861 1939410 -83756344 + L1M3b LINE L1 3 1287 -4994 19237 33 9 0 chr15 1939411 1942375 -83753379 + L1PA3 LINE L1 3178 6155 0 520 293 54 0 chr15 1942376 1942543 -83753211 - MST-int LTR MaLR -314 1337 1162 267 73 98 0 chr15 1946963 1947004 -83748750 + MLT2A2 LTR ERVL 399 443 -10 25 31 0 0 chr15 1947010 1947042 -83748712 + AT_rich Low_complexity Low_complexity 1 32 0 3116 80 15 2 chr15 1947042 1947443 -83748311 - MLT2A2 LTR ERVL -47 406 1 10675 89 12 1 chr15 1947443 1948826 -83746928 - HERVL-A2 LTR ERVL 0 5654 4258 6868 153 15 37 chr15 1948859 1950068 -83745686 - THE1C-int LTR MaLR -2 1578 427 2345 144 98 7 chr15 1950085 1950510 -83745244 - MER4E LTR ERV1 -129 650 217 728 119 8 0 chr15 1950511 1950629 -83745125 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 2175 121 3 0 chr15 1950647 1950945 -83744809 - AluSp SINE Alu -14 299 1 1737 104 0 0 chr15 1950945 1951175 -83744579 - MER4E LTR ERV1 -549 230 1 1393 145 9 13 chr15 1951175 1951403 -83744351 - THE1C-int LTR MaLR -1353 227 1 1580 162 22 114 chr15 1951403 1951760 -83743994 - THE1C LTR MaLR 0 375 59 2714 17 0 0 chr15 1951760 1952057 -83743697 - AluYa5 SINE Alu -14 297 1 1580 162 22 114 chr15 1952057 1952112 -83743642 - THE1C LTR MaLR -316 59 1 42540 60 3 1 chr15 1952147 1958294 -83737460 + L1PA4 LINE L1 1 6155 0 5145 202 19 39 chr15 1958300 1960099 -83735655 - L1PA13 LINE L1 -3816 2981 1204 3583 231 46 25 chr15 1960105 1960954 -83734800 - L1PA13 LINE L1 -5920 867 1 529 197 42 42 chr15 1960964 1961106 -83734648 + LTR49-int LTR ERV1 4036 4177 -2154 493 276 70 30 chr15 1961123 1961322 -83734432 + MLT2F LTR ERVL 385 591 -72 660 125 21 0 chr15 1961337 1961433 -83734321 - AluJ/FLAM SINE Alu -213 99 2 560 271 0 0 chr15 1961450 1961579 -83734175 + FRAM SINE Alu 2 130 -46 1586 208 60 21 chr15 1962305 1962690 -83733064 - MLT1D LTR MaLR -105 400 1 550 226 8 0 chr15 1963482 1963606 -83732148 + L1MA8 LINE L1 6167 6291 0 2049 140 3 0 chr15 1964245 1964531 -83731223 + AluSx SINE Alu 1 287 -25 182 125 0 25 chr15 1964858 1964898 -83730856 + (GA)n Simple_repeat Simple_repeat 2 40 0 699 201 0 0 chr15 1965466 1965716 -83730038 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 3990 136 14 22 chr15 1965744 1965797 -83729957 + MER50 LTR ERV1 83 135 -599 2098 129 0 0 chr15 1965797 1966108 -83729646 + AluSc SINE Alu 1 311 0 3990 136 14 22 chr15 1966108 1966693 -83729061 + MER50 LTR ERV1 135 717 -17 601 203 11 0 chr15 1966696 1966873 -83728881 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr15 1967627 1967647 -83728107 + (TG)n Simple_repeat Simple_repeat 2 21 0 925 233 107 47 chr15 1970717 1971146 -83724608 + MLT1D LTR MaLR 39 493 -12 327 164 0 0 chr15 1971298 1971359 -83724395 + CT-rich Low_complexity Low_complexity 1 61 0 378 314 14 90 chr15 1973871 1974094 -83721660 + MIR SINE MIR 53 258 -4 276 298 38 15 chr15 1974672 1974803 -83720951 + L1ME4a LINE L1 3418 3551 -2595 359 245 84 45 chr15 1975356 1975511 -83720243 + L1ME4a LINE L1 5231 5391 -755 354 347 112 16 chr15 1975497 1975748 -83720006 + L1ME4a LINE L1 5664 5938 -183 * 944 148 223 135 chr15 1976048 1976412 -83719342 - MSTD LTR MaLR 0 396 1 1768 238 82 14 chr15 1977308 1977892 -83717862 + MER67B LTR ERV1 32 655 -6 318 205 0 98 chr15 1982379 1982491 -83713263 + L1MEd LINE L1 968 1068 -5051 336 325 41 33 chr15 1982634 1982905 -83712849 + L1ME3A LINE L1 5684 5956 -214 225 163 116 0 chr15 1983145 1983188 -83712566 + L1P4 LINE L1 5699 5746 -420 260 176 0 66 chr15 1983702 1983884 -83711870 + (ACCTG)n Simple_repeat Simple_repeat 1 170 0 1344 222 50 7 chr15 1987232 1987534 -83708220 + MSTB LTR MaLR 100 414 -12 764 155 0 0 chr15 1987807 1987923 -83707831 - AluSg/x SINE Alu -21 291 176 277 259 52 26 chr15 1987933 1988049 -83707705 - HAL1b LINE L1 -539 809 691 341 238 156 19 chr15 1988108 1988268 -83707486 - L1ME3A LINE L1 -182 5988 5807 833 69 4 7 chr15 1988388 1988517 -83707237 + MER30B DNA MER1_type 4 109 -81 261 57 0 0 chr15 1988638 1988673 -83707081 + (TC)n Simple_repeat Simple_repeat 1 35 0 343 276 61 42 chr15 1988683 1988891 -83706863 + MLT1B LTR MaLR 181 370 -4 809 291 55 30 chr15 1989003 1989401 -83706353 + MLT1B-int LTR MaLR 264 671 -700 419 327 35 51 chr15 1989700 1989957 -83705797 + MLT1B-int LTR MaLR 1238 1490 -245 3930 219 37 9 chr15 1990657 1991954 -83703800 + L1PB4 LINE L1 4814 6152 -4 21 0 0 0 chr15 1991970 1991991 -83703763 + AT_rich Low_complexity Low_complexity 1 21 0 1973 121 7 10 chr15 1992023 1992303 -83703451 + AluSg SINE Alu 1 281 -29 234 81 0 0 chr15 1992303 1992340 -83703414 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1497 257 59 41 chr15 1992352 1993113 -83702641 + L1MD2 LINE L1 5117 5896 -463 1879 310 119 28 chr15 1993115 1994205 -83701549 - L1M4b LINE L1 -5650 1209 21 235 289 55 32 chr15 1994218 1994457 -83701297 - L1M1 LINE L1 -4708 1718 1422 664 240 89 27 chr15 1994832 1995057 -83700697 - LTR52-int LTR ERVL -3297 259 21 1033 250 47 47 chr15 1995108 1995488 -83700266 - LTR52 LTR ERVL -38 383 4 4127 202 52 5 chr15 1995849 1996722 -83699032 - MER49 LTR ERV1 -9 914 1 365 248 128 18 chr15 1996728 1996837 -83698917 - MER89-int LTR ERV1 -1653 5148 5028 24 0 0 0 chr15 1996837 1996861 -83698893 + AT_rich Low_complexity Low_complexity 1 24 0 485 266 146 31 chr15 1998649 1998875 -83696879 - MIR SINE MIR 0 262 11 343 343 86 6 chr15 1998926 1999101 -83696653 + MIR SINE MIR 74 262 0 324 265 183 27 chr15 1999131 1999306 -83696448 - MIR SINE MIR -40 222 30 3200 21 5 3 chr15 2000242 2000616 -83695138 - L1PA4 LINE L1 -5 6150 5776 4446 34 0 0 chr15 2000616 2001140 -83694614 + L1PA4 LINE L1 5275 5798 -357 418 287 28 101 chr15 2001465 2001712 -83694042 - MLT1J LTR MaLR -9 502 274 24 0 0 0 chr15 2002139 2002163 -83693591 + AT_rich Low_complexity Low_complexity 1 24 0 7683 24 7 0 chr15 2002221 2003475 -83692279 + L1PA3 LINE L1 4910 6169 0 22 0 0 0 chr15 2003479 2003501 -83692253 + AT_rich Low_complexity Low_complexity 1 22 0 260 262 99 55 chr15 2005986 2006163 -83689591 - MIR SINE MIR -67 195 16 399 250 167 21 chr15 2006334 2006622 -83689132 + L1ME4a LINE L1 5781 6110 -11 504 204 0 0 chr15 2006797 2006890 -83688864 + LTR55 LTR ERV 1 93 -455 754 257 33 0 chr15 2006917 2007131 -83688623 + LTR55 LTR ERV 235 455 -93 409 352 142 4 chr15 2007594 2007875 -83687879 - L3 LINE CR1 -159 1418 1099 578 188 87 0 chr15 2008957 2009106 -83686648 + Ricksha DNA DNA 9 170 -1084 * 2300 165 44 40 chr15 2009009 2009488 -83686266 - Ricksha DNA DNA -18 3228 2745 1152 167 33 12 chr15 2009488 2009728 -83686026 + L1MA5 LINE L1 6056 6300 0 2300 165 44 40 chr15 2009728 2009744 -83686010 - Ricksha DNA DNA -501 2745 2731 2556 120 69 5 chr15 2011148 2011556 -83684198 - MER57B LTR ERV1 0 434 1 180 274 119 36 chr15 2011733 2011817 -83683937 - L2 LINE L2 0 3272 3182 5525 56 0 9 chr15 2011863 2012556 -83683198 - L1PA7 LINE L1 -1 6153 5467 3266 85 7 12 chr15 2012556 2013108 -83682646 + L1PA7 LINE L1 4936 5483 -689 198 256 0 0 chr15 2013109 2013148 -83682606 - MER5A DNA MER1_type -138 51 13 227 361 45 69 chr15 2013416 2013793 -83681961 - L2 LINE L2 0 3313 2946 * 239 343 56 9 chr15 2013787 2013895 -83681859 - L2 LINE L2 -579 2735 2623 940 151 11 11 chr15 2013927 2014106 -83681648 - Looper DNA T2_type -1376 182 4 361 156 52 0 chr15 2014248 2014325 -83681429 + L1MB5 LINE L1 6028 6108 -66 1063 295 91 15 chr15 2014482 2014889 -83680865 + LTR16C LTR ERVL 37 474 -17 481 326 84 74 chr15 2014947 2015517 -83680237 - L2 LINE L2 -934 2380 1805 739 305 5 0 chr15 2015525 2015715 -83680039 + L2 LINE L2 2885 3075 -238 626 159 26 0 chr15 2015718 2015831 -83679923 + L1MA9 LINE L1 5993 6108 -204 1077 210 0 0 chr15 2015832 2016037 -83679717 + MER2 DNA MER2_type 1 205 -140 387 211 40 0 chr15 2016067 2016143 -83679611 + MER2 DNA MER2_type 264 342 -3 984 123 67 20 chr15 2016147 2016342 -83679412 + L1MA9 LINE L1 6109 6312 0 328 313 78 39 chr15 2016353 2016583 -83679171 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2016584 2016614 -83679140 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2017946 2017987 -83677767 + (TA)n Simple_repeat Simple_repeat 1 43 0 1502 159 3 73 chr15 2018944 2019258 -83676496 - AluJb SINE Alu -20 292 1 254 342 13 0 chr15 2019476 2019555 -83676199 + MER5A DNA MER1_type 110 189 0 1140 270 37 12 chr15 2019779 2020317 -83675437 + L1M3c LINE L1 2155 2977 -4519 715 235 123 58 chr15 2020318 2021007 -83674747 + L1M3c LINE L1 2843 3576 -3989 1032 219 0 0 chr15 2021008 2021218 -83674536 + MER2 DNA MER2_type 1 210 -135 4484 243 49 28 chr15 2021325 2023067 -83672687 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2023068 2023375 -83672379 + AluSc SINE Alu 1 307 -2 7902 185 24 7 chr15 2023379 2024906 -83670848 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 2025582 2025760 -83669994 + MIR3 SINE MIR 2 194 -14 3224 34 0 3 chr15 2028376 2028762 -83666992 + L1PA5 LINE L1 5763 6147 -7 33 0 0 0 chr15 2028765 2028798 -83666956 + AT_rich Low_complexity Low_complexity 1 33 0 1576 165 28 31 chr15 2029033 2029385 -83666369 - L1MA7 LINE L1 0 6291 5941 2390 184 13 4 chr15 2029386 2029849 -83665905 + L1MA7 LINE L1 5436 5902 -389 359 293 88 61 chr15 2030048 2030333 -83665421 - LTR67 LTR ERVL -4 553 250 2242 81 10 10 chr15 2030333 2030640 -83665114 - AluY SINE Alu -4 307 1 359 293 88 61 chr15 2030640 2030795 -83664959 - LTR67 LTR ERVL -307 250 101 405 0 0 0 chr15 2030888 2030933 -83664821 + (CA)n Simple_repeat Simple_repeat 2 46 0 1020 167 44 4 chr15 2032187 2032414 -83663340 + MER33 DNA MER1_type 1 236 -88 831 256 90 50 chr15 2032710 2033011 -83662743 + L2 LINE L2 2995 3307 -6 184 228 51 51 chr15 2033060 2033139 -83662615 - L2 LINE L2 -71 3242 3164 3436 43 11 0 chr15 2034769 2035208 -83660546 - L1PA4 LINE L1 -136 6019 5576 211 298 181 11 chr15 2036334 2036428 -83659326 - L2 LINE L2 -5 3308 3199 451 274 67 0 chr15 2039261 2039396 -83656358 + MLT1J1 LTR MaLR 28 171 -275 2189 122 7 3 chr15 2039560 2039864 -83655890 + AluSx SINE Alu 1 305 -7 461 295 32 26 chr15 2040785 2040975 -83654779 - MLT1I LTR MaLR -218 191 1 22 0 0 0 chr15 2041154 2041176 -83654578 + AT_rich Low_complexity Low_complexity 1 22 0 184 361 0 12 chr15 2041661 2041744 -83654010 - L2 LINE L2 -2 3311 3230 736 301 82 75 chr15 2041787 2042482 -83653272 - L2 LINE L2 -926 2388 1689 664 180 0 0 chr15 2042976 2043104 -83652650 - L1MA4 LINE L1 -10 6290 6163 462 287 54 49 chr15 2043111 2043423 -83652331 - L1MC4a LINE L1 -1879 5929 5613 2263 117 0 0 chr15 2043423 2043723 -83652031 - AluSx SINE Alu -12 300 1 462 287 54 49 chr15 2043723 2043779 -83651975 - L1MC4a LINE L1 -2195 5613 5559 882 97 28 0 chr15 2044490 2044635 -83651119 - L1MA6 LINE L1 0 6300 6152 2301 101 10 0 chr15 2044700 2044998 -83650756 - AluSg SINE Alu -9 301 1 288 53 0 0 chr15 2045717 2045755 -83649999 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 215 0 114 chr15 2046165 2046244 -83649510 - MIR SINE MIR -97 165 96 253 339 170 27 chr15 2047186 2047516 -83648238 + L2 LINE L2 2463 2839 -475 556 321 27 0 chr15 2048207 2048391 -83647363 - MIR SINE MIR -6 256 68 204 211 0 0 chr15 2048528 2048566 -83647188 + (CA)n Simple_repeat Simple_repeat 1 38 0 10714 165 19 0 chr15 2048631 2050759 -83644995 + L1PA13 LINE L1 2006 4188 -2609 1368 129 57 0 chr15 2050741 2050989 -83644765 + L1PA13 LINE L1 4440 4701 -2096 * 677 150 136 7 chr15 2050999 2051139 -83644615 + Tigger1 DNA MER2_type 2259 2416 -2 373 310 32 39 chr15 2051554 2051709 -83644045 + MIR SINE MIR 1 154 -108 23 54 0 0 chr15 2051900 2051937 -83643817 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr15 2052154 2052207 -83643547 + AT_rich Low_complexity Low_complexity 1 53 0 2893 166 11 23 chr15 2052825 2053182 -83642572 - Tigger3b DNA MER2_type -2463 565 216 2329 81 0 0 chr15 2053182 2053477 -83642277 - AluY SINE Alu -16 295 1 2893 166 11 23 chr15 2053477 2053691 -83642063 - Tigger3b DNA MER2_type -2812 216 1 371 262 75 73 chr15 2054796 2055466 -83640288 - HSREP522 Satellite telomeric 0 671 1 765 219 83 91 chr15 2055536 2056092 -83639662 - HSREP522 Satellite telomeric 0 551 1 2153 110 0 31 chr15 2057666 2057985 -83637769 - AluSg SINE Alu -1 309 1 1388 186 144 42 chr15 2058932 2059336 -83636418 + L1P LINE L1 3282 3726 -2420 2302 103 0 0 chr15 2059403 2059695 -83636059 + AluSc SINE Alu 1 292 -17 482 266 146 31 chr15 2065364 2065590 -83630164 - MIR SINE MIR 0 262 11 360 311 16 8 chr15 2065641 2065763 -83629991 + MIR SINE MIR 74 196 -66 309 265 183 27 chr15 2065846 2066021 -83629733 - MIR SINE MIR -40 222 30 189 0 0 0 chr15 2066770 2066791 -83628963 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3206 19 5 0 chr15 2066965 2067340 -83628414 - L1PA4 LINE L1 -3 6152 5776 4195 32 0 0 chr15 2067340 2067864 -83627890 + L1PA4 LINE L1 5275 5798 -357 363 257 41 76 chr15 2068189 2068360 -83627394 - MLT1J LTR MaLR -9 502 338 24 0 0 0 chr15 2068862 2068886 -83626868 + AT_rich Low_complexity Low_complexity 1 24 0 7083 25 6 0 chr15 2068944 2070163 -83625591 + L1PA3 LINE L1 4910 6135 -20 220 67 0 44 chr15 2070174 2070219 -83625535 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 238 271 99 55 chr15 2072701 2072878 -83622876 - MIR SINE MIR -67 195 16 317 225 79 22 chr15 2073047 2073225 -83622529 + L1ME4a LINE L1 5781 5968 -153 461 204 0 0 chr15 2073510 2073603 -83622151 + LTR55 LTR ERV 1 93 -455 671 252 33 0 chr15 2073630 2073844 -83621910 + LTR55 LTR ERV 235 455 -93 433 365 126 3 chr15 2074313 2074598 -83621156 - L3 LINE CR1 -159 1418 1099 2172 165 44 36 chr15 2075679 2076210 -83619544 - Ricksha DNA DNA -18 3233 2750 1104 167 33 12 chr15 2076210 2076450 -83619304 + L1MA5 LINE L1 6056 6300 0 2172 165 44 36 chr15 2076450 2076466 -83619288 - Ricksha DNA DNA -501 2750 2736 2481 123 69 5 chr15 2077877 2078285 -83617469 - MER57B LTR ERV1 0 434 1 5389 59 0 9 chr15 2078592 2079285 -83616469 - L1PA7 LINE L1 -1 6153 5467 3076 82 10 0 chr15 2079285 2079818 -83615936 + L1PA7 LINE L1 4936 5471 -701 326 190 17 0 chr15 2079818 2079876 -83615878 - MER5A DNA MER1_type -118 71 13 245 355 45 71 chr15 2080144 2080522 -83615232 - L2 LINE L2 0 3313 2946 237 343 56 9 chr15 2080516 2080624 -83615130 - L2 LINE L2 -579 2735 2623 * 886 151 11 11 chr15 2080656 2080835 -83614919 - Looper DNA T2_type -1376 182 4 320 156 52 0 chr15 2080977 2081054 -83614700 + L1MB5 LINE L1 6028 6108 -66 906 298 91 15 chr15 2081212 2081618 -83614136 + LTR16C LTR ERVL 38 474 -17 521 332 66 73 chr15 2081676 2082248 -83613506 - L2 LINE L2 -934 2380 1813 744 305 5 0 chr15 2082253 2082443 -83613311 + L2 LINE L2 2885 3075 -238 570 168 26 0 chr15 2082446 2082559 -83613195 + L1MA9 LINE L1 5993 6108 -204 971 219 0 0 chr15 2082560 2082765 -83612989 + MER2 DNA MER2_type 1 205 -140 374 222 14 0 chr15 2082799 2082871 -83612883 + MER2 DNA MER2_type 270 342 -3 961 118 67 20 chr15 2082875 2083070 -83612684 + L1MA9 LINE L1 6109 6312 0 288 317 78 39 chr15 2083081 2083311 -83612443 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2083312 2083342 -83612412 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2084674 2084715 -83611039 + (TA)n Simple_repeat Simple_repeat 1 43 0 1628 159 3 73 chr15 2085672 2085986 -83609768 - AluJb SINE Alu -20 292 1 245 354 13 0 chr15 2086203 2086282 -83609472 + MER5A DNA MER1_type 110 189 0 1067 263 39 12 chr15 2086509 2087043 -83608711 + L1M3c LINE L1 2155 2977 -4519 586 246 114 55 chr15 2087044 2087720 -83608034 + L1M3c LINE L1 2843 3558 -4007 1057 214 0 0 chr15 2087734 2087944 -83607810 + MER2 DNA MER2_type 1 210 -135 4454 242 51 28 chr15 2088049 2089788 -83605966 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2089789 2090096 -83605658 + AluSc SINE Alu 1 307 -2 4683 188 32 9 chr15 2090100 2091022 -83604732 + L1M1 LINE L1 10 953 -6612 1199 252 55 102 chr15 2091156 2091405 -83604349 - L1 LINE L1 -3137 4428 4169 239 171 0 0 chr15 2091405 2091446 -83604308 + U2 snRNA snRNA 1 41 -147 1199 252 55 102 chr15 2091446 2091949 -83603805 - L1 LINE L1 -3396 4169 3673 1180 219 7 7 chr15 2091979 2092249 -83603505 + L1M3e LINE L1 7 276 -6754 422 261 120 42 chr15 2092234 2092297 -83603457 - L1 LINE L1 -4011 3554 3497 * 964 113 6 6 chr15 2092297 2092456 -83603298 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 422 261 120 42 chr15 2092456 2092676 -83603078 - L1 LINE L1 -4068 3497 3249 1920 241 9 9 chr15 2092677 2093255 -83602499 - L1 LINE L1 -4475 3090 2513 1219 217 38 62 chr15 2095334 2095707 -83600047 + MSTD LTR MaLR 33 396 0 1407 273 28 2 chr15 2095710 2096142 -83599612 + MSTD-int LTR MaLR 2 444 -1291 * 1695 241 109 38 chr15 2096138 2096979 -83598775 + MSTD-int LTR MaLR 730 1719 -16 1465 208 46 14 chr15 2096993 2097339 -83598415 + MSTD LTR MaLR 1 357 -39 1018 122 0 0 chr15 2097343 2097491 -83598263 + AluY SINE Alu 146 293 -18 295 85 0 21 chr15 2097493 2097540 -83598214 + MSTD LTR MaLR 350 395 -1 469 106 0 47 chr15 2097542 2097627 -83598127 - L1M2 LINE L1 -822 5469 5389 1565 181 29 39 chr15 2097635 2098043 -83597711 + L1MA7 LINE L1 5867 6270 -21 1117 317 54 38 chr15 2098160 2098899 -83596855 - MER89-int LTR ERV1 -2540 4261 3511 1285 232 23 31 chr15 2100294 2100682 -83595072 - MLT1B LTR MaLR 0 390 6 435 305 21 21 chr15 2101077 2101267 -83594487 + L1MEc LINE L1 390 579 -5817 812 164 10 77 chr15 2101339 2101534 -83594220 - MER4A LTR ERV1 -110 554 373 240 99 380 14 chr15 2101589 2101660 -83594094 - MER4A LTR ERV1 -567 97 1 204 88 59 0 chr15 2103022 2103056 -83592698 + (CCTTG)n Simple_repeat Simple_repeat 4 39 0 1564 151 27 81 chr15 2103078 2103522 -83592232 + HSREP522 Satellite telomeric 3 422 -82 964 202 5 0 chr15 2103541 2103744 -83592010 - L1 LINE L1 -1998 4148 3945 619 175 8 42 chr15 2103775 2103895 -83591859 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr15 2103948 2103969 -83591785 + AT_rich Low_complexity Low_complexity 1 21 0 5687 138 15 17 chr15 2103969 2105058 -83590696 + L1MA5A LINE L1 5174 6264 -33 21 0 0 0 chr15 2105072 2105093 -83590661 + AT_rich Low_complexity Low_complexity 1 21 0 2476 144 51 90 chr15 2105803 2106426 -83589328 - L1MB2 LINE L1 -1 6170 5572 22 0 0 0 chr15 2106494 2106516 -83589238 + AT_rich Low_complexity Low_complexity 1 22 0 2407 73 0 22 chr15 2106651 2106965 -83588789 - AluY SINE Alu -4 307 1 276 30 0 0 chr15 2107240 2107273 -83588481 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 240 0 0 chr15 2108674 2108724 -83587030 + MER3 DNA MER1_type 41 90 -119 * 740 173 123 17 chr15 2108692 2108871 -83586883 - MER3 DNA MER1_type -11 198 1 705 152 3 43 chr15 2109316 2109517 -83586237 - L1MB8 LINE L1 -2 6182 5989 807 188 0 6 chr15 2109537 2109702 -83586052 - L1MB8 LINE L1 -170 6008 5845 278 310 9 0 chr15 2110537 2110650 -83585104 + (TG)n Simple_repeat Simple_repeat 2 115 0 1639 151 14 92 chr15 2112361 2112732 -83583022 + MER2 DNA MER2_type 3 344 0 387 0 0 0 chr15 2113157 2113200 -83582554 + (CA)n Simple_repeat Simple_repeat 1 43 0 194 114 0 23 chr15 2113203 2113247 -83582507 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 247 204 0 19 chr15 2114220 2114274 -83581480 + L2 LINE L2 3217 3269 -3 600 314 64 13 chr15 2114859 2115095 -83580659 + L2 LINE L2 2729 2976 -338 842 149 32 0 chr15 2115100 2115254 -83580500 - L1MB1 LINE L1 -1 6167 6009 1959 120 11 0 chr15 2117011 2117277 -83578477 - AluSx SINE Alu -43 269 1 26 0 0 0 chr15 2120072 2120098 -83575656 + AT_rich Low_complexity Low_complexity 1 26 0 213 226 113 47 chr15 2120428 2120534 -83575220 + MIR SINE MIR 100 212 -50 340 310 129 19 chr15 2120749 2120904 -83574850 + MIR3 SINE MIR 13 184 -24 2283 123 0 0 chr15 2121741 2122051 -83573703 + AluSq SINE Alu 1 310 -3 278 26 26 0 chr15 2122806 2122845 -83572909 + (TA)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr15 2123690 2123726 -83572028 + AT_rich Low_complexity Low_complexity 1 36 0 792 159 15 0 chr15 2123726 2123858 -83571896 + AluJb SINE Alu 1 134 -178 1581 178 59 0 chr15 2123859 2124146 -83571608 + AluJo SINE Alu 1 304 -8 262 318 0 0 chr15 2124337 2124425 -83571329 + MIR SINE MIR 175 262 0 2360 83 0 7 chr15 2124506 2124807 -83570947 - AluY SINE Alu -12 299 1 286 260 57 24 chr15 2124844 2124967 -83570787 - L1ME4a LINE L1 -51 6070 5944 1969 119 3 31 chr15 2125134 2125420 -83570334 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 2125421 2125441 -83570313 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 676 251 16 43 chr15 2125451 2125706 -83570048 + L1MEd LINE L1 1010 1257 -4862 884 122 0 7 chr15 2126717 2126856 -83568898 - AluSg/x SINE Alu -2 310 173 2720 157 38 4 chr15 2126856 2127352 -83568402 - L1MA4 LINE L1 -290 6010 5498 2148 129 0 3 chr15 2128621 2128931 -83566823 + AluSx SINE Alu 1 309 -3 1480 245 60 8 chr15 2129605 2129881 -83565873 - L1ME4a LINE L1 -465 5701 5441 2176 91 0 3 chr15 2129881 2130166 -83565588 - AluSx SINE Alu -24 288 5 1480 245 60 8 chr15 2130166 2130420 -83565334 - L1ME4a LINE L1 -725 5441 5143 2120 110 0 0 chr15 2130665 2130946 -83564808 + AluSg SINE Alu 7 287 -23 24 0 0 0 chr15 2130949 2130973 -83564781 + AT_rich Low_complexity Low_complexity 1 24 0 2193 95 3 0 chr15 2131185 2131491 -83564263 + AluSx SINE Alu 1 307 0 1952 139 0 29 chr15 2132026 2132342 -83563412 + AluSx SINE Alu 3 309 -3 2170 108 7 0 chr15 2133028 2133315 -83562439 + AluSx SINE Alu 1 289 -23 672 121 0 10 chr15 2133705 2133804 -83561950 - MER4A LTR ERV1 -566 98 1 1006 121 79 11 chr15 2133804 2133994 -83561760 + L1MA3 LINE L1 5705 5907 -398 * 2704 189 86 13 chr15 2133992 2134669 -83561085 - L1 LINE L1 -1446 4700 3975 * 6849 121 28 20 chr15 2134661 2136148 -83559606 - L1PA3 LINE L1 -2 6153 4678 2158 103 0 19 chr15 2136148 2136458 -83559296 - AluSx SINE Alu 0 312 9 6849 121 28 20 chr15 2136458 2136676 -83559078 - L1PA3 LINE L1 -1477 4678 3052 2048 127 6 9 chr15 2136676 2137008 -83558746 - L1PB2 LINE L1 0 7570 7240 3023 198 25 27 chr15 2137008 2137971 -83557783 - L1PB2 LINE L1 -622 6948 5996 3187 214 32 10 chr15 2137992 2138905 -83556849 - L1PB2 LINE L1 -3114 4451 3509 677 209 103 169 chr15 2138908 2139239 -83556515 - LTR28 LTR ERV1 -676 344 1 7704 225 42 8 chr15 2139240 2140864 -83554890 - L1M1 LINE L1 -5870 1695 17 382 185 2 7 chr15 2142463 2142547 -83553207 - L1MA4 LINE L1 -175 6129 6049 620 238 33 0 chr15 2142566 2142717 -83553037 + FRAM SINE Alu 1 156 -20 1573 215 3 0 chr15 2142719 2143021 -83552733 + AluJo SINE Alu 1 303 -9 273 194 16 23 chr15 2143143 2143229 -83552525 + L1MB5 LINE L1 5838 5932 -238 1793 138 25 14 chr15 2143268 2143550 -83552204 + AluSx SINE Alu 3 287 -25 2783 257 90 48 chr15 2143871 2146360 -83549394 - L1M4 LINE L1 -3591 3053 455 263 189 116 11 chr15 2146357 2146452 -83549302 - L1M4 LINE L1 -3081 3065 2961 * 1249 243 14 7 chr15 2146452 2146740 -83549014 - AluJb SINE Alu -22 290 1 334 203 40 124 chr15 2146831 2147033 -83548721 + MER53 DNA DNA 5 189 0 985 258 0 14 chr15 2147758 2147979 -83547775 - AluJo SINE Alu -82 230 13 365 304 5 77 chr15 2148414 2148608 -83547146 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 2150520 2150557 -83545197 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr15 2151346 2151385 -83544369 + AT_rich Low_complexity Low_complexity 1 39 0 3699 211 57 27 chr15 2152913 2154816 -83540938 - L1MA8 LINE L1 -3 6288 4326 5133 136 66 7 chr15 2154838 2155789 -83539965 - L1MA2 LINE L1 0 6304 5298 613 256 175 6 chr15 2156381 2156741 -83539013 + L1MB2 LINE L1 1071 1491 -4822 544 283 103 32 chr15 2156778 2157210 -83538544 + L1MB2 LINE L1 1363 2223 -4160 506 222 101 50 chr15 2157374 2157811 -83537943 + L1MB2 LINE L1 2137 2611 -3771 328 250 158 12 chr15 2158058 2158298 -83537456 + L1MB2 LINE L1 2837 3111 -3271 887 281 30 9 chr15 2158315 2158646 -83537108 + L1MB2 LINE L1 4757 5094 -1288 482 253 166 4 chr15 2158635 2158864 -83536890 + L1MB2 LINE L1 5909 6174 -233 * 2180 94 10 7 chr15 2158890 2159187 -83536567 + AluSx SINE Alu 1 298 -14 989 282 64 88 chr15 2160071 2160695 -83535059 + L1M3 LINE L1 2 610 -5345 3167 236 74 46 chr15 2160738 2161345 -83534409 + L1M3 LINE L1 3978 4566 -1490 2322 96 0 7 chr15 2161345 2161638 -83534116 - AluSg SINE Alu -16 294 4 3167 236 74 46 chr15 2161638 2162374 -83533380 + L1M3 LINE L1 4566 5367 -689 398 183 0 0 chr15 2162383 2162454 -83533300 + L1PB4 LINE L1 6045 6115 -41 2113 87 18 0 chr15 2163061 2163399 -83532355 - AluSc SINE Alu 0 343 1 402 294 114 92 chr15 2164293 2165127 -83530627 + L1M4 LINE L1 445 1296 -5553 1421 181 42 19 chr15 2167140 2167270 -83528484 - L1MA9 LINE L1 -387 5925 5799 261 0 0 0 chr15 2167270 2167299 -83528455 + (TG)n Simple_repeat Simple_repeat 2 30 0 1421 181 42 19 chr15 2167299 2167478 -83528276 - L1MA9 LINE L1 -513 5799 5609 1372 185 39 4 chr15 2167472 2167753 -83528001 + L1MA9 LINE L1 5972 6262 -50 * 316 187 22 112 chr15 2168005 2168139 -83527615 - L1MEc LINE L1 -4258 2138 2017 1656 112 29 105 chr15 2168140 2168481 -83527273 - AluYb8 SINE Alu 0 317 1 432 0 0 0 chr15 2169661 2169709 -83526045 + (CA)n Simple_repeat Simple_repeat 1 48 0 2117 119 7 10 chr15 2169888 2170190 -83525564 + AluSx SINE Alu 1 301 -11 331 138 231 0 chr15 2172319 2172384 -83523370 - MADE1 DNA Mariner 0 80 1 1075 274 18 26 chr15 2173695 2173927 -83521827 + L1M4 LINE L1 3355 3587 -3261 3008 102 13 11 chr15 2173927 2174389 -83521365 - L1PA10 LINE L1 0 6168 5706 1075 274 18 26 chr15 2174389 2174770 -83520984 + L1M4 LINE L1 3587 3963 -2885 348 125 0 0 chr15 2175002 2175066 -83520688 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2019 82 50 4 chr15 2175066 2175345 -83520409 - AluY SINE Alu -19 292 1 1834 164 3 3 chr15 2178215 2178508 -83517246 - AluSg1 SINE Alu -15 294 2 2056 125 4 4 chr15 2178684 2178999 -83516755 + AluSg SINE Alu 1 315 0 2509 117 13 8 chr15 2180193 2180586 -83515168 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 2180908 2181093 -83514661 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 2181195 2181443 -83514311 - MIR SINE MIR -1 261 4 318 26 0 0 chr15 2182637 2182658 -83513096 + (TG)n Simple_repeat Simple_repeat 1 60 0 318 26 0 0 chr15 2182658 2182697 -83513057 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 367 36 36 chr15 2183197 2183336 -83512418 - MER5B DNA MER1_type 0 178 40 710 186 0 0 chr15 2183341 2183459 -83512295 + FLAM_A SINE Alu 1 118 -15 1073 207 161 8 chr15 2183633 2183894 -83511860 - AluJb SINE Alu -1 301 1 340 293 101 22 chr15 2185643 2185853 -83509901 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 2187742 2187848 -83507906 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 2188544 2188695 -83507059 - MIR SINE MIR -47 215 57 3128 163 8 9 chr15 2189077 2189605 -83506149 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr15 2189833 2189885 -83505869 - MER91B DNA MER1_type -60 130 79 534 277 188 15 chr15 2190866 2191260 -83504494 - MLT1L LTR MaLR -153 462 1 181 296 56 28 chr15 2191266 2191337 -83504417 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 2191342 2191556 -83504198 - MER58A DNA MER1_type -3 221 8 2066 153 7 0 chr15 2193337 2193644 -83502110 + AluSc SINE Alu 1 309 0 1364 195 136 49 chr15 2193747 2194236 -83501518 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 2194730 2194779 -83500975 + AT_rich Low_complexity Low_complexity 1 49 0 52 50 0 0 chr15 2195823 2195903 -83499851 + AT_rich Low_complexity Low_complexity 1 80 0 1597 166 7 7 chr15 2197480 2197769 -83497985 - L1PA15 LINE L1 -1 6164 5876 635 214 1 39 chr15 2197870 2198088 -83497666 - L1M4 LINE L1 -2598 3548 3344 710 181 167 9 chr15 2198090 2198300 -83497454 - MSTA LTR MaLR 0 428 186 306 147 0 0 chr15 2198300 2198368 -83497386 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 2136 110 10 3 chr15 2198370 2198679 -83497075 - AluY SINE Alu 0 311 1 378 100 71 14 chr15 2198681 2198751 -83497003 - MSTA LTR MaLR -231 197 124 205 264 22 22 chr15 2198882 2198973 -83496781 + (TA)n Simple_repeat Simple_repeat 1 91 0 370 185 0 0 chr15 2199459 2199524 -83496230 - MER58A DNA MER1_type 0 224 160 941 167 25 19 chr15 2199528 2199690 -83496064 - AluJb SINE Alu -18 294 132 444 224 10 10 chr15 2199703 2199801 -83495953 - MER58A DNA MER1_type -9 98 1 25 65 0 0 chr15 2200250 2200296 -83495458 + AT_rich Low_complexity Low_complexity 1 46 0 2501 289 133 17 chr15 2200401 2200779 -83494975 + L2 LINE L2 1777 2110 -1203 1996 156 0 0 chr15 2200779 2201080 -83494674 - AluSx SINE Alu -11 301 1 2501 289 133 17 chr15 2201080 2201836 -83493918 + L2 LINE L2 2110 3040 -273 452 261 142 54 chr15 2202117 2202377 -83493377 + L2 LINE L2 3031 3313 0 21 0 0 0 chr15 2202510 2202531 -83493223 + AT_rich Low_complexity Low_complexity 1 21 0 1940 149 3 0 chr15 2202637 2202932 -83492822 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 2202937 2202959 -83492795 + AT_rich Low_complexity Low_complexity 1 22 0 1485 147 72 33 chr15 2203843 2204163 -83491591 + THE1C LTR MaLR 5 340 -35 507 73 0 0 chr15 2204163 2204231 -83491523 + (TA)n Simple_repeat Simple_repeat 1 68 0 1485 147 72 33 chr15 2204231 2204243 -83491511 + THE1C LTR MaLR 340 350 -25 3294 216 45 10 chr15 2204243 2204856 -83490898 - L1P5 LINE L1 -388 5766 5176 315 0 0 0 chr15 2204856 2204891 -83490863 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3294 216 45 10 chr15 2204891 2205832 -83489922 - L1P5 LINE L1 -978 5176 4125 3098 147 29 10 chr15 2206072 2206583 -83489171 + MER1A DNA MER1_type 1 521 -8 243 0 0 0 chr15 2207811 2207838 -83487916 + (TG)n Simple_repeat Simple_repeat 2 28 0 857 192 0 0 chr15 2207843 2207989 -83487765 - AluSg/x SINE Alu -31 279 134 1668 179 0 0 chr15 2209170 2209450 -83486304 + L1PA12 LINE L1 637 916 -6665 893 101 0 7 chr15 2209455 2209594 -83486160 + L1PA12 LINE L1 1616 1753 -5828 297 270 71 73 chr15 2209989 2210679 -83485075 + HSREP522 Satellite telomeric 1 688 -14 279 167 0 0 chr15 2211114 2211162 -83484592 - L1PA12 LINE L1 -6273 1308 1261 4165 236 56 34 chr15 2211182 2213635 -83482119 + L1PA13 LINE L1 482 3042 -3755 2490 87 0 0 chr15 2213644 2213955 -83481799 + AluY SINE Alu 1 311 0 1268 227 39 20 chr15 2214047 2214528 -83481226 + MER4-int LTR ERV1 109 641 -5957 981 276 0 0 chr15 2214642 2214896 -83480858 + AluY SINE Alu 58 311 0 2092 155 77 14 chr15 2214934 2215480 -83480274 + MER4-int LTR ERV1 29 652 -5946 669 159 82 159 chr15 2215507 2215871 -83479883 + MER4-int LTR ERV1 762 1097 -5501 6092 86 6 0 chr15 2215879 2216951 -83478803 - L1PA7 LINE L1 -1 6153 5051 3066 119 8 4 chr15 2216977 2217490 -83478264 + L1P LINE L1 4555 5069 -1077 279 0 0 0 chr15 2218290 2218321 -83477433 + (T)n Simple_repeat Simple_repeat 1 31 0 2073 146 0 3 chr15 2218321 2218684 -83477070 - L1P LINE L1 -3825 2321 1960 1352 234 3 17 chr15 2218854 2219153 -83476601 - AluJo SINE Alu -16 296 2 1225 196 30 9 chr15 2220113 2220578 -83475176 + L1P4 LINE L1 5027 5496 -670 26 0 0 0 chr15 2220578 2220604 -83475150 + AT_rich Low_complexity Low_complexity 1 26 0 2157 113 0 10 chr15 2220724 2221024 -83474730 + AluSg SINE Alu 1 297 -13 1008 285 87 63 chr15 2221105 2222922 -83472832 - L1MCc LINE L1 -4326 2796 727 251 345 53 35 chr15 2222960 2223131 -83472623 - L1MCc LINE L1 -5601 822 649 209 273 160 13 chr15 2224143 2224293 -83471461 - MIR SINE MIR 0 262 91 371 62 0 75 chr15 2224511 2224591 -83471163 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1581 189 3 25 chr15 2224594 2224911 -83470843 - AluJb SINE Alu -2 310 1 2320 196 37 4 chr15 2226337 2226856 -83468898 - L1MB3 LINE L1 -2 6181 5646 840 225 171 52 chr15 2227445 2227925 -83467829 + L1M4 LINE L1 4399 4935 -1211 396 0 0 0 chr15 2227936 2227980 -83467774 + (TG)n Simple_repeat Simple_repeat 1 44 0 321 309 47 0 chr15 2228024 2228173 -83467581 + L1MA10 LINE L1 6169 6324 -10 576 278 87 20 chr15 2228411 2228663 -83467091 + LTR37B LTR ERV1 198 466 -2 309 298 24 0 chr15 2229961 2230129 -83465625 + (CA)n Simple_repeat Simple_repeat 2 173 0 243 270 19 13 chr15 2230171 2230330 -83465424 + (CA)n Simple_repeat Simple_repeat 2 161 0 282 238 49 12 chr15 2230348 2230512 -83465242 + (CA)n Simple_repeat Simple_repeat 2 171 0 2200 88 0 3 chr15 2230640 2230936 -83464818 - AluY SINE Alu -16 295 1 3205 50 0 4 chr15 2232113 2232571 -83463183 + L1P2 LINE L1 4984 5438 -716 6754 149 18 13 chr15 2234057 2235651 -83460103 - L1MA1 LINE L1 -9 6293 4687 2221 125 3 0 chr15 2235798 2236110 -83459644 + AluSq SINE Alu 1 313 0 1198 219 72 81 chr15 2236418 2236948 -83458806 - L1ME2 LINE L1 -1 6163 5639 318 0 0 0 chr15 2238190 2238229 -83457525 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr15 2238229 2238256 -83457498 + AT_rich Low_complexity Low_complexity 1 27 0 2031 194 61 28 chr15 2238784 2239289 -83456465 - L1MA7 LINE L1 -1 6290 5769 2493 211 60 28 chr15 2239293 2239941 -83455813 - L1MB8 LINE L1 -2 6176 5508 * 4368 193 40 18 chr15 2239935 2241453 -83454301 - L1MA7 LINE L1 -510 5781 4230 21 0 0 0 chr15 2242765 2242786 -83452968 + AT_rich Low_complexity Low_complexity 1 21 0 333 140 0 0 chr15 2243913 2243970 -83451784 + (A)n Simple_repeat Simple_repeat 1 57 0 33 73 0 0 chr15 2244677 2244745 -83451009 + AT_rich Low_complexity Low_complexity 1 68 0 464 230 0 9 chr15 2244745 2244858 -83450896 - L1MA7 LINE L1 -1904 4242 4131 354 278 147 17 chr15 2248549 2248688 -83447066 - MIR SINE MIR -63 145 34 184 158 26 0 chr15 2248713 2248751 -83447003 + MIR SINE MIR 102 140 -122 273 167 0 0 chr15 2249631 2249685 -83446069 + (CA)n Simple_repeat Simple_repeat 2 55 0 401 249 35 47 chr15 2250401 2250570 -83445184 + MLT1L LTR MaLR 422 588 -27 278 177 203 0 chr15 2250717 2250796 -83444958 + MIR SINE MIR 71 165 -97 1381 220 11 11 chr15 2251197 2251474 -83444280 - AluJb SINE Alu -35 277 1 25 31 0 0 chr15 2251554 2251586 -83444168 + AT_rich Low_complexity Low_complexity 1 32 0 1774 159 120 26 chr15 2252173 2252564 -83443190 + MSTA LTR MaLR 1 428 0 736 195 0 8 chr15 2252892 2253020 -83442734 + AluJb SINE Alu 6 132 -180 572 231 88 6 chr15 2253052 2253232 -83442522 + FAM SINE Alu 1 59 0 216 0 0 0 chr15 2253847 2253871 -83441883 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1017 199 5 0 chr15 2253989 2254175 -83441579 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr15 2254948 2254970 -83440784 + AT_rich Low_complexity Low_complexity 1 22 0 511 281 88 38 chr15 2255089 2255312 -83440442 + L1ME4a LINE L1 5535 5780 -341 1713 174 7 3 chr15 2255312 2255599 -83440155 - AluSx SINE Alu -23 289 2 511 281 88 38 chr15 2255599 2255695 -83440059 + L1ME4a LINE L1 5780 5870 -251 196 309 31 62 chr15 2255775 2255937 -83439817 + MIR SINE MIR 105 261 -1 183 114 0 0 chr15 2255966 2256001 -83439753 + (CA)n Simple_repeat Simple_repeat 1 35 0 331 252 18 72 chr15 2256047 2256158 -83439596 + L1ME4a LINE L1 6014 6118 -3 1624 201 10 16 chr15 2256200 2256513 -83439241 + AluJo SINE Alu 1 311 -1 2302 128 103 140 chr15 2256555 2257148 -83438606 - LTR4 LTR ERV1 0 596 26 207 167 0 0 chr15 2258274 2258316 -83437438 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 652 236 62 0 chr15 2258409 2258570 -83437184 + MIR SINE MIR 20 190 -72 460 210 63 42 chr15 2259106 2259249 -83436505 + MLT1D LTR MaLR 48 193 -312 1201 181 4 69 chr15 2259251 2259527 -83436227 + AluJb SINE Alu 5 262 -50 1350 239 52 49 chr15 2263478 2264010 -83431744 + MER67C LTR ERV1 22 514 0 23 33 0 0 chr15 2264286 2264316 -83431438 + AT_rich Low_complexity Low_complexity 1 30 0 223 327 47 0 chr15 2264455 2264562 -83431192 - MIR SINE MIR -71 191 80 524 289 39 55 chr15 2264710 2265137 -83430617 + L1M3e LINE L1 466 1675 -4890 8133 234 43 33 chr15 2265375 2268225 -83427529 + L1M3e LINE L1 2007 4903 -2662 1586 184 6 32 chr15 2268225 2268540 -83427214 + AluJo SINE Alu 6 312 0 8133 234 43 33 chr15 2268540 2269690 -83426064 + L1M3e LINE L1 4903 6041 -1524 24 32 0 0 chr15 2270212 2270243 -83425511 + GC_rich Low_complexity Low_complexity 1 31 0 405 294 17 6 chr15 2271989 2272166 -83423588 + (CA)n Simple_repeat Simple_repeat 1 179 0 257 315 9 0 chr15 2272200 2272311 -83423443 + (CA)n Simple_repeat Simple_repeat 1 112 0 1054 169 15 0 chr15 2273321 2273516 -83422238 + MER49 LTR ERV1 715 912 -11 22 56 0 0 chr15 2275102 2275138 -83420616 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr15 2276647 2276677 -83419077 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr15 2276700 2276752 -83419002 + AT_rich Low_complexity Low_complexity 1 52 0 2137 125 10 0 chr15 2276916 2277221 -83418533 - AluSp SINE Alu -3 310 3 653 318 52 16 chr15 2277444 2277828 -83417926 - L1MEc LINE L1 -3568 2647 2250 277 233 161 52 chr15 2277925 2278118 -83417636 - L1MEc LINE L1 -4282 2114 1901 320 301 82 68 chr15 2278154 2278300 -83417454 - L1MEc LINE L1 -4590 1806 1655 4778 17 6 0 chr15 2278300 2278817 -83416937 + L1PA3 LINE L1 5636 6155 0 320 301 82 68 chr15 2278817 2278889 -83416865 - L1MEc LINE L1 -4741 1655 1585 242 355 73 32 chr15 2279215 2279339 -83416415 - MIR SINE MIR -57 151 23 265 313 57 17 chr15 2280393 2280569 -83415185 + HERV16 LTR ERVL 2781 2963 -2033 1015 65 0 0 chr15 2284603 2284726 -83411028 + AluY SINE Alu 1 123 -188 22 35 0 0 chr15 2284726 2284755 -83410999 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 2284920 2284983 -83410771 + AT_rich Low_complexity Low_complexity 1 63 0 312 129 86 43 chr15 2287110 2287180 -83408574 + AluJ/FRAM SINE Alu 229 301 -1 2095 124 0 3 chr15 2287188 2287487 -83408267 + AluSp SINE Alu 1 298 -15 1583 168 37 17 chr15 2287797 2288094 -83407660 - AluJb SINE Alu -9 303 1 248 293 217 0 chr15 2288148 2288182 -83407572 + MIR SINE MIR 2 27 -235 204 67 0 0 chr15 2288182 2288212 -83407542 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 248 293 217 0 chr15 2288212 2288334 -83407420 + MIR SINE MIR 27 192 -70 1761 101 0 0 chr15 2288362 2288600 -83407154 - AluSg/x SINE Alu -7 305 68 325 276 74 37 chr15 2288807 2288970 -83406784 - L1M4 LINE L1 -938 5208 5040 27 49 0 0 chr15 2288970 2289011 -83406743 + AT_rich Low_complexity Low_complexity 1 41 0 186 308 30 77 chr15 2289037 2289206 -83406548 - L2 LINE L2 -203 3069 2909 491 264 60 53 chr15 2289212 2289496 -83406258 - L1M4 LINE L1 -1091 5055 4770 21 95 0 0 chr15 2289642 2289705 -83406049 + AT_rich Low_complexity Low_complexity 1 63 0 987 114 29 105 chr15 2289852 2289959 -83405795 + L1PA16 LINE L1 5932 6017 -149 1693 173 0 3 chr15 2289959 2290248 -83405506 + AluJb SINE Alu 1 288 -24 987 114 29 105 chr15 2290248 2290350 -83405404 + L1PA16 LINE L1 6017 6125 -41 910 213 0 0 chr15 2290506 2290706 -83405048 + AluSg/x SINE Alu 116 315 0 1192 134 18 0 chr15 2290941 2291112 -83404642 + AluSq SINE Alu 1 174 -139 201 216 39 0 chr15 2291930 2291981 -83403773 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr15 2292018 2292039 -83403715 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 2292842 2292866 -83402888 + AT_rich Low_complexity Low_complexity 1 24 0 236 71 71 0 chr15 2293251 2293307 -83402447 + GA-rich Low_complexity Low_complexity 2 61 0 2338 155 62 56 chr15 2293314 2293816 -83401938 - LTR9 LTR ERV1 -107 505 1 1822 178 0 7 chr15 2293877 2294175 -83401579 + AluJo SINE Alu 1 296 -16 2032 118 14 3 chr15 2296514 2296802 -83398952 + AluSg SINE Alu 1 291 -19 8212 103 32 15 chr15 2296838 2297615 -83398139 - HSMAR1 DNA Mariner 0 1287 483 2217 124 0 0 chr15 2297615 2297922 -83397832 + AluSx SINE Alu 1 307 -5 8212 103 32 15 chr15 2297922 2298315 -83397439 - HSMAR1 DNA Mariner -804 483 98 200 156 44 0 chr15 2298442 2298487 -83397267 + (CA)n Simple_repeat Simple_repeat 2 48 0 1986 148 10 7 chr15 2298839 2299137 -83396617 + AluSx SINE Alu 1 299 -13 417 175 92 25 chr15 2299143 2299263 -83396491 - L1ME4a LINE L1 -2 6119 5992 186 103 0 0 chr15 2299599 2299628 -83396126 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3061 50 0 2 chr15 2299646 2299678 -83396076 + L1P2 LINE L1 5111 5142 -1013 4762 26 4 9 chr15 2299678 2300216 -83395538 - L1PA4 LINE L1 -5 6150 5616 3061 50 0 2 chr15 2300216 2300689 -83395065 + L1PA4 LINE L1 5142 5609 -546 291 345 73 9 chr15 2300892 2301002 -83394752 - L2 LINE L2 -3 3269 3153 2279 95 0 3 chr15 2301211 2301515 -83394239 - AluY SINE Alu -8 303 1 2102 129 0 3 chr15 2304100 2304402 -83391352 - AluSx SINE Alu -11 301 1 192 273 132 74 chr15 2304516 2304637 -83391117 - MIR SINE MIR -58 150 23 263 300 36 36 chr15 2305391 2305501 -83390253 + L2 LINE L2 3204 3313 0 382 261 120 20 chr15 2305811 2305997 -83389757 + MIR3 SINE MIR 3 206 -2 294 392 0 0 chr15 2306614 2306716 -83389038 + MIR SINE MIR 48 149 -59 356 258 17 17 chr15 2307240 2307360 -83388394 - MER112 DNA MER1_type -103 157 38 832 154 24 0 chr15 2307382 2307505 -83388249 - FLAM_C SINE Alu -17 126 1 909 89 0 16 chr15 2307940 2308063 -83387691 - AluSg/x SINE Alu -24 288 168 2145 121 0 0 chr15 2308440 2308729 -83387025 - AluSx SINE Alu -23 289 1 1646 205 10 0 chr15 2309185 2309478 -83386276 - AluJo SINE Alu -16 296 1 2355 89 3 3 chr15 2309791 2310094 -83385660 - AluSq SINE Alu -10 303 1 965 179 151 114 chr15 2310640 2310992 -83384762 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 2312528 2312549 -83383205 + AT_rich Low_complexity Low_complexity 1 21 0 396 186 15 7 chr15 2314283 2314378 -83381376 + L1M3 LINE L1 5683 5780 -382 27 29 0 0 chr15 2314647 2314681 -83381073 + AT_rich Low_complexity Low_complexity 1 34 0 278 259 0 12 chr15 2314816 2314897 -83380857 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 380 301 75 63 chr15 2315042 2315441 -83380313 + L1M4 LINE L1 2110 2513 -3633 1979 182 106 40 chr15 2315797 2316270 -83379484 + MLT1D LTR MaLR 1 504 -1 762 168 59 0 chr15 2316914 2317033 -83378721 - AluJb SINE Alu -185 127 2 824 210 80 34 chr15 2317233 2317264 -83378490 + L1ME3A LINE L1 5889 5917 -253 831 103 0 0 chr15 2317264 2317371 -83378383 - U6 snRNA snRNA 0 107 1 824 210 80 34 chr15 2317371 2317601 -83378153 + L1ME3A LINE L1 5917 6162 -8 271 178 55 27 chr15 2317762 2317835 -83377919 - L1ME3A LINE L1 -3 6167 6093 200 344 49 5 chr15 2317921 2318050 -83377704 + MIR SINE MIR 20 151 -67 382 221 43 80 chr15 2318243 2318406 -83377348 - MIR SINE MIR -16 246 90 1503 186 62 0 chr15 2318441 2318716 -83377038 - AluJb SINE Alu -20 292 1 665 211 54 92 chr15 2319203 2319463 -83376291 - L1ME1 LINE L1 -32 6134 5885 422 225 0 22 chr15 2319463 2319552 -83376202 - AluJo SINE Alu -176 136 50 974 175 55 23 chr15 2319556 2319773 -83375981 - L1ME1 LINE L1 -260 5906 5683 1735 156 43 0 chr15 2320159 2320441 -83375313 - AluJb SINE Alu -14 298 5 7560 259 70 26 chr15 2320454 2324477 -83371277 + L1ME LINE L1 1046 5208 -1007 1344 126 0 42 chr15 2324484 2324699 -83371055 + AluSc SINE Alu 1 206 -103 629 190 20 99 chr15 2324799 2324886 -83370868 + L1ME LINE L1 5298 5390 -846 1734 121 16 72 chr15 2324886 2325193 -83370561 - AluSx SINE Alu -18 294 5 629 190 20 99 chr15 2325193 2325316 -83370438 + L1ME LINE L1 5390 5493 -743 191 331 107 38 chr15 2325327 2325590 -83370164 - L2 LINE L2 -665 2649 2369 387 271 33 46 chr15 2325641 2325881 -83369873 - L1MC5 LINE L1 -179 7782 7546 1080 237 67 3 chr15 2327047 2327347 -83368407 + L1MD2 LINE L1 5904 6222 -137 22 0 0 0 chr15 2327564 2327586 -83368168 + AT_rich Low_complexity Low_complexity 1 22 0 499 125 20 0 chr15 2327954 2328046 -83367708 - L1MD1 LINE L1 0 7995 6146 7552 29 8 0 chr15 2328355 2329729 -83366025 - L1PA4 LINE L1 -1 6154 4776 239 186 0 17 chr15 2330914 2330973 -83364781 + CT-rich Low_complexity Low_complexity 5 62 0 22 0 0 0 chr15 2331841 2331863 -83363891 + AT_rich Low_complexity Low_complexity 1 22 0 2037 150 0 3 chr15 2331914 2332227 -83363527 - AluSx SINE Alu 0 312 1 2362 79 0 0 chr15 2333820 2334123 -83361631 - AluY SINE Alu -8 303 1 301 294 32 54 chr15 2334537 2334758 -83360996 + L1ME LINE L1 5616 5831 -359 301 335 152 6 chr15 2334983 2335147 -83360607 - MIR3 SINE MIR -7 201 14 1438 81 5 0 chr15 2335536 2335721 -83360033 + AluSp SINE Alu 1 186 -127 21 0 0 0 chr15 2335891 2335912 -83359842 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr15 2336074 2336116 -83359638 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4647 70 22 31 chr15 2336154 2336591 -83359163 + PABL_B LTR ERV1 1 432 -235 2395 80 3 0 chr15 2336591 2336891 -83358863 + AluSp SINE Alu 1 301 -12 4647 70 22 31 chr15 2336891 2337098 -83358656 + PABL_B LTR ERV1 432 639 -28 326 336 76 72 chr15 2337290 2337805 -83357949 - LTR33A LTR ERVL -4 519 3 355 272 26 0 chr15 2337862 2337950 -83357804 - MIR3 SINE MIR -45 163 73 231 323 0 16 chr15 2338054 2338116 -83357638 + L2 LINE L2 3204 3264 -8 330 182 0 0 chr15 2338700 2338766 -83356988 + GA-rich Low_complexity Low_complexity 1 66 0 248 221 0 15 chr15 2339214 2339282 -83356472 + GA-rich Low_complexity Low_complexity 3 69 0 380 215 33 66 chr15 2339868 2339989 -83355765 + L1MC4 LINE L1 7434 7550 -492 453 292 38 14 chr15 2340419 2340628 -83355126 + L1MC4 LINE L1 7689 7902 -140 208 313 16 0 chr15 2340638 2340702 -83355052 + (TATG)n Simple_repeat Simple_repeat 4 68 0 338 230 36 43 chr15 2340703 2340842 -83354912 + L1MC4 LINE L1 7903 8040 -2 1557 157 28 0 chr15 2340911 2341159 -83354595 + AluJb SINE Alu 3 257 -55 271 207 0 0 chr15 2341243 2341301 -83354453 - MLT1I LTR MaLR -12 397 340 1522 186 11 0 chr15 2341446 2341761 -83353993 - AluJb SINE Alu 0 318 1 785 254 54 94 chr15 2342274 2342680 -83353074 + MLT1I LTR MaLR 18 407 -2 824 254 36 10 chr15 2343682 2343875 -83351879 - AluJb SINE Alu -28 284 87 2490 216 75 28 chr15 2344833 2345538 -83350216 - L1ME2 LINE L1 -37 6127 5390 229 200 0 0 chr15 2345575 2345615 -83350139 + L2 LINE L2 3265 3304 -9 1135 267 160 13 chr15 2347703 2348274 -83347480 - L2 LINE L2 -126 3187 2536 533 212 35 104 chr15 2348590 2348821 -83346933 + MER58C DNA MER1_type 1 215 0 21 0 0 0 chr15 2349826 2349847 -83345907 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 2349868 2349896 -83345858 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 2350523 2350551 -83345203 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 2350978 2350996 -83344758 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr15 2350996 2351022 -83344732 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr15 2351956 2351995 -83343759 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 2352490 2352512 -83343242 + AT_rich Low_complexity Low_complexity 1 22 0 465 297 62 16 chr15 2352720 2352912 -83342842 + L1ME LINE L1 3 203 -5867 320 280 33 47 chr15 2352953 2353103 -83342651 + L1ME LINE L1 595 742 -5328 231 225 0 0 chr15 2357382 2357422 -83338332 + Tigger7 DNA MER2_type 228 267 -2220 270 176 20 0 chr15 2357435 2357486 -83338268 + Tigger7 DNA MER2_type 2536 2587 0 2036 128 0 19 chr15 2357518 2357831 -83337923 - AluSx SINE Alu -5 307 1 2240 61 7 17 chr15 2358222 2358547 -83337207 - AluY SINE Alu 0 311 1 466 190 20 0 chr15 2358777 2358877 -83336877 + L1MB5 LINE L1 5743 5844 -330 285 289 40 27 chr15 2359370 2359519 -83336235 - L1MC/D LINE L1 -2342 5466 5316 * 857 215 47 6 chr15 2359498 2359728 -83336026 - L1MB4 LINE L1 -119 6047 5792 1357 248 126 63 chr15 2359728 2360065 -83335689 - L1MB4 LINE L1 -1375 4771 4457 246 114 0 0 chr15 2360065 2360100 -83335654 - U2 snRNA snRNA -153 35 1 1357 248 126 63 chr15 2360100 2360633 -83335121 - L1MB4 LINE L1 -1689 4457 3810 849 318 146 52 chr15 2360635 2361361 -83334393 + L2 LINE L2 1822 2615 -699 855 322 107 29 chr15 2361457 2361830 -83333924 + L2 LINE L2 2824 3239 -74 960 139 0 0 chr15 2361830 2361988 -83333766 + (TA)n Simple_repeat Simple_repeat 2 159 0 855 322 107 29 chr15 2361988 2362061 -83333693 + L2 LINE L2 3239 3305 -8 663 317 45 5 chr15 2362521 2362864 -83332890 - LTR33 LTR ERVL -2 519 102 334 291 60 15 chr15 2362938 2363072 -83332682 - MLT1L LTR MaLR -112 503 364 225 309 85 0 chr15 2363481 2363575 -83332179 - L3 LINE CR1 -157 1420 1319 26 82 0 0 chr15 2364711 2364772 -83330982 + AT_rich Low_complexity Low_complexity 1 61 0 1715 93 14 54 chr15 2415078 2415356 -83280398 + AluSp SINE Alu 34 300 -13 2002 121 0 36 chr15 2415358 2415664 -83280090 + AluSq SINE Alu 1 295 -18 334 307 42 28 chr15 2415697 2415909 -83279845 + L1MEc LINE L1 1850 2064 -4332 365 261 0 0 chr15 2415918 2416010 -83279744 + L1MEc LINE L1 2255 2346 -4050 475 225 8 23 chr15 2416110 2416239 -83279515 + AluSp/q SINE Alu 187 313 0 482 270 138 6 chr15 2416331 2416490 -83279264 + L1MD3 LINE L1 6663 6842 -1153 2297 125 0 0 chr15 2416523 2416835 -83278919 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 2416869 2416891 -83278863 + AT_rich Low_complexity Low_complexity 1 22 0 2086 121 3 0 chr15 2417163 2417452 -83278302 - AluSc SINE Alu -19 290 1 2493 123 14 34 chr15 2417452 2417866 -83277888 - L1MA3 LINE L1 -246 6059 5654 5473 146 11 53 chr15 2419140 2419196 -83276558 + L1M1 LINE L1 4286 4343 -1928 2311 105 0 0 chr15 2419196 2419501 -83276253 - AluSx SINE Alu -7 305 1 5473 146 11 53 chr15 2419501 2420749 -83275005 + L1M1 LINE L1 4343 5526 -745 21 36 0 0 chr15 2420961 2420989 -83274765 + AT_rich Low_complexity Low_complexity 1 28 0 38 61 0 0 chr15 2421445 2421511 -83274243 + AT_rich Low_complexity Low_complexity 1 66 0 1399 208 0 4 chr15 2422250 2422495 -83273259 - AluJo SINE Alu -68 244 1 243 0 0 0 chr15 2422535 2422562 -83273192 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2294 98 7 3 chr15 2422669 2422975 -83272779 + AluY SINE Alu 1 307 -4 357 285 89 0 chr15 2423008 2423131 -83272623 + MIR SINE MIR 129 262 0 1185 233 66 13 chr15 2424044 2424421 -83271333 - L1M4 LINE L1 -2118 4028 3632 2118 250 64 30 chr15 2424457 2425384 -83270370 - L1M4 LINE L1 -2436 3710 2753 1349 246 35 11 chr15 2425485 2425948 -83269806 + L1MEc LINE L1 3095 3568 -2647 1695 177 31 0 chr15 2425948 2426236 -83269518 - AluJo SINE Alu -15 297 1 1622 240 112 14 chr15 2426236 2426752 -83269002 - L1ME3 LINE L1 -107 6055 5489 1827 108 35 0 chr15 2427881 2428139 -83267615 - AluSq SINE Alu -11 302 36 1484 61 0 0 chr15 2428144 2428324 -83267430 - AluY SINE Alu -13 298 119 471 248 198 5 chr15 2428437 2428659 -83267095 + L1M4 LINE L1 2293 2557 -3589 385 188 0 0 chr15 2429352 2429416 -83266338 - AluSq SINE Alu -5 297 234 1250 132 0 0 chr15 2429416 2429583 -83266171 - AluSq SINE Alu -146 167 1 2090 203 69 19 chr15 2429583 2430149 -83265605 + L1M4 LINE L1 2683 3276 -2870 230 330 31 0 chr15 2430192 2430289 -83265465 - MIR SINE MIR -22 240 141 872 184 0 13 chr15 2430297 2430449 -83265305 - FRAM SINE Alu -21 155 6 1340 108 0 0 chr15 2430825 2431001 -83264753 + AluY SINE Alu 131 306 -5 2216 110 3 13 chr15 2431010 2431318 -83264436 + AluSq SINE Alu 1 305 -8 1534 151 43 18 chr15 2431319 2431597 -83264157 + L1MB3 LINE L1 5324 5608 -572 572 254 0 0 chr15 2431598 2431716 -83264038 + FLAM_C SINE Alu 2 119 -24 634 137 0 0 chr15 2431726 2431828 -83263926 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 2431828 2431860 -83263894 + AT_rich Low_complexity Low_complexity 1 32 0 2440 87 0 0 chr15 2432272 2432572 -83263182 + AluY SINE Alu 1 300 -11 457 226 73 7 chr15 2433145 2433282 -83262472 - MER21B LTR ERV1 -57 806 661 584 246 17 17 chr15 2433289 2433468 -83262286 + L1MDa LINE L1 1541 1719 -4821 2056 169 120 2 chr15 2433513 2433938 -83261816 + LTR53 LTR ERVL 5 479 -40 620 158 82 7 chr15 2434011 2434157 -83261597 + L1MC/D LINE L1 5323 5479 -880 326 319 142 14 chr15 2434989 2435071 -83260683 + L1MC4a LINE L1 5856 5926 -1882 1961 136 3 7 chr15 2435071 2435379 -83260375 + AluSq SINE Alu 1 307 -6 326 319 142 14 chr15 2435379 2435578 -83260176 + L1MC4a LINE L1 5926 6173 -1635 315 0 0 0 chr15 2435820 2435855 -83259899 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 269 0 0 chr15 2435861 2435913 -83259841 + MER58B DNA MER1_type 13 64 -277 1650 87 8 75 chr15 2435958 2436210 -83259544 - AluSx SINE Alu -77 235 1 965 209 42 35 chr15 2436216 2436475 -83259279 + MER58B DNA MER1_type 80 340 -1 1952 140 13 13 chr15 2436706 2437006 -83258748 + AluSg1 SINE Alu 1 300 -9 6465 175 45 23 chr15 2438200 2438971 -83256783 - L1 LINE L1 -1984 4162 3345 2031 148 0 7 chr15 2438971 2439276 -83256478 - AluSx SINE Alu -9 303 1 6465 175 45 23 chr15 2439276 2439872 -83255882 - L1 LINE L1 -2801 3345 2764 * 7666 153 20 8 chr15 2439864 2441185 -83254569 - L1 LINE L1 -1158 4988 3652 1838 213 38 27 chr15 2441185 2441664 -83254090 - L1 LINE L1 -3384 2762 2279 1147 205 139 13 chr15 2441678 2441981 -83253773 + MLT1E1 LTR MaLR 305 645 -9 737 191 8 15 chr15 2442173 2442304 -83253450 + AluJo SINE Alu 12 141 -171 1784 150 18 3 chr15 2442306 2442592 -83253162 + AluJb SINE Alu 1 290 -22 52 0 0 0 chr15 2442592 2442644 -83253110 + AT_rich Low_complexity Low_complexity 1 52 0 2230 113 3 3 chr15 2442937 2443239 -83252515 + AluY SINE Alu 1 302 -9 806 160 0 0 chr15 2443347 2443472 -83252282 + FLAM_C SINE Alu 1 125 -18 2051 98 61 0 chr15 2443771 2444048 -83251706 - AluSc SINE Alu -15 294 1 2229 106 7 0 chr15 2444079 2444371 -83251383 - AluSx SINE Alu -18 294 1 810 260 56 86 chr15 2444479 2444910 -83250844 + L1MD1 LINE L1 5825 6242 0 2293 78 17 3 chr15 2445329 2445624 -83250130 + AluSx SINE Alu 1 299 -13 2032 100 21 21 chr15 2446293 2446583 -83249171 + AluSx SINE Alu 1 290 -22 2161 105 17 3 chr15 2447098 2447393 -83248361 - AluSq SINE Alu -14 299 1 191 188 21 0 chr15 2448576 2448624 -83247130 + GA-rich Low_complexity Low_complexity 1 49 0 35 88 0 0 chr15 2448949 2449040 -83246714 + GC_rich Low_complexity Low_complexity 1 91 0 25 31 0 0 chr15 2449069 2449101 -83246653 + GC_rich Low_complexity Low_complexity 1 32 0 1633 133 48 44 chr15 2449697 2449991 -83245763 + AluJo SINE Alu 1 295 -17 1290 123 0 0 chr15 2449995 2450166 -83245588 + AluSx SINE Alu 1 171 -141 422 130 0 0 chr15 2450267 2450336 -83245418 - AluS SINE Alu -242 70 2 578 234 114 10 chr15 2450337 2450538 -83245216 - L1 LINE L1 -3250 2896 2675 302 202 53 26 chr15 2450538 2450630 -83245124 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 2083 83 0 18 chr15 2450630 2450906 -83244848 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 2450906 2450927 -83244827 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2351 73 0 48 chr15 2450927 2451240 -83244514 + AluY SINE Alu 1 298 -13 330 229 133 0 chr15 2451242 2451347 -83244407 - L1 LINE L1 -3460 2686 2568 1339 101 106 0 chr15 2452317 2452525 -83243229 + MER30 DNA MER1_type 1 230 0 1621 146 92 0 chr15 2453508 2453769 -83241985 - AluJb SINE Alu -19 293 9 934 279 126 26 chr15 2454781 2455069 -83240685 - L1ME2 LINE L1 -112 6052 5794 1808 160 13 3 chr15 2455069 2455376 -83240378 - AluJb SINE Alu 0 312 3 934 279 126 26 chr15 2455376 2455588 -83240166 - L1ME2 LINE L1 -370 5794 5502 2152 133 3 3 chr15 2456124 2456433 -83239321 - AluSp SINE Alu -4 309 1 2186 131 0 0 chr15 2456456 2456762 -83238992 - AluSx SINE Alu -6 306 1 268 103 0 138 chr15 2457524 2457611 -83238143 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 237 281 35 18 chr15 2458272 2458386 -83237368 + Charlie5 DNA MER1_type 1 116 -2496 * 1135 232 3 10 chr15 2458381 2458691 -83237063 + Charlie5 DNA MER1_type 2222 2529 -83 1992 118 3 70 chr15 2458691 2459006 -83236748 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 2459027 2459077 -83236677 + T-rich Low_complexity Low_complexity 5 56 0 1952 152 0 3 chr15 2459111 2459394 -83236360 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 2460079 2460109 -83235645 + AT_rich Low_complexity Low_complexity 1 30 0 376 78 0 0 chr15 2460601 2460652 -83235102 - Alu SINE Alu -250 52 2 2205 125 3 0 chr15 2460872 2461176 -83234578 - AluSx SINE Alu -7 305 1 1676 154 7 7 chr15 2461286 2461559 -83234195 - AluSx SINE Alu -39 273 1 375 220 63 107 chr15 2462756 2462848 -83232906 - L1MC5 LINE L1 -49 7912 7817 2234 124 0 0 chr15 2462848 2463154 -83232600 - AluSq SINE Alu -7 306 1 375 220 63 107 chr15 2463154 2463379 -83232375 - L1MC5 LINE L1 -144 7817 7609 1278 154 6 101 chr15 2464005 2464232 -83231522 - AluJb SINE Alu 0 312 128 1729 162 0 29 chr15 2464232 2464540 -83231214 + AluSp SINE Alu 1 299 -14 1278 154 6 101 chr15 2464540 2464657 -83231097 - AluJb SINE Alu -184 128 1 1645 166 6 43 chr15 2464685 2465010 -83230744 + AluSp SINE Alu 1 313 0 764 229 13 48 chr15 2465045 2465158 -83230596 - AluJb SINE Alu -92 220 117 1654 163 7 10 chr15 2465158 2465465 -83230289 + AluSp SINE Alu 1 306 -7 764 229 13 48 chr15 2465465 2465578 -83230176 - AluJb SINE Alu -195 117 2 1637 149 3 50 chr15 2465613 2465935 -83229819 + AluSp SINE Alu 7 313 0 558 176 9 9 chr15 2465946 2466054 -83229700 - FLAM_C SINE Alu -34 109 2 264 108 0 0 chr15 2466083 2466120 -83229634 + AluSp SINE Alu 1 37 -265 2433 157 47 19 chr15 2466151 2466623 -83229131 - LTR15 LTR ERV1 -7 486 2 923 131 24 42 chr15 2466624 2466792 -83228962 + AluSp SINE Alu 28 192 -121 405 233 124 30 chr15 2466793 2466840 -83228914 - L1MC4a LINE L1 -1866 5942 5901 1390 175 26 63 chr15 2466840 2467143 -83228611 - AluJb SINE Alu -20 292 1 405 233 124 30 chr15 2467143 2467297 -83228457 - L1MC4a LINE L1 -1907 5901 5722 286 271 125 20 chr15 2467405 2467648 -83228106 + L1ME3A LINE L1 5257 5395 -769 350 296 78 31 chr15 2467705 2467978 -83227776 + L1ME4a LINE L1 5650 5934 -206 352 139 0 97 chr15 2468011 2468083 -83227671 + AluSx SINE Alu 1 54 -248 * 7589 87 14 21 chr15 2468082 2469146 -83226608 - MER11C LTR ERVK -14 1057 1 1556 113 96 0 chr15 2469146 2469376 -83226378 + AluSx SINE Alu 49 300 -12 225 243 307 21 chr15 2469719 2469859 -83225895 + L2 LINE L2 3114 3293 -20 813 196 25 27 chr15 2470499 2470686 -83225068 - L1MC3 LINE L1 -2 7765 6196 375 231 146 15 chr15 2471908 2472038 -83223716 + MER103 DNA DNA 8 154 -12 213 149 21 21 chr15 2472346 2472393 -83223361 + MER5A DNA MER1_type 121 167 -22 2728 42 0 0 chr15 2472716 2473027 -83222727 - AluY SINE Alu 0 311 1 1785 282 39 89 chr15 2475517 2476312 -83219442 + L1ME3A LINE L1 5407 6161 -9 225 0 0 0 chr15 2476514 2476539 -83219215 + (TTCCC)n Simple_repeat Simple_repeat 5 29 0 2227 71 0 3 chr15 2477175 2477498 -83218256 - AluY SINE Alu 0 322 1 2458 31 41 0 chr15 2478242 2478536 -83217218 - AluY SINE Alu -5 306 1 2816 228 66 40 chr15 2479713 2479971 -83215783 - L1ME1 LINE L1 -5 6161 5911 1931 149 0 3 chr15 2479971 2480280 -83215474 - AluJb SINE Alu -4 308 1 2816 228 66 40 chr15 2480280 2481660 -83214094 - L1ME1 LINE L1 -255 5911 4493 278 284 179 36 chr15 2481682 2482547 -83213207 + L1MEc LINE L1 829 1817 -4579 711 81 0 0 chr15 2482605 2482704 -83213050 - AluY SINE Alu -4 307 209 315 274 109 109 chr15 2482938 2482982 -83212772 + L1MEc LINE L1 1835 1878 -4337 2044 129 0 0 chr15 2482982 2483285 -83212469 + AluSx SINE Alu 1 303 -9 315 274 109 109 chr15 2483285 2483506 -83212248 + L1MEc LINE L1 1877 2100 -4115 1133 143 0 0 chr15 2483520 2483695 -83212059 + AluSg/x SINE Alu 121 295 -17 1696 194 48 18 chr15 2483695 2484087 -83211667 + L1MB4 LINE L1 5777 6180 0 633 207 90 59 chr15 2484879 2485101 -83210653 + L1MC5 LINE L1 7680 7908 -53 1778 104 12 0 chr15 2485697 2485956 -83209798 + AluSq SINE Alu 1 262 -51 1467 200 225 25 chr15 2485962 2486473 -83209281 + MER90 LTR ERV1 2 614 0 1921 156 3 3 chr15 2487099 2487406 -83208348 + AluJb SINE Alu 3 309 -3 397 303 30 12 chr15 2487409 2487574 -83208180 + L1MC3 LINE L1 6706 6873 -912 398 235 61 17 chr15 2487757 2487872 -83207882 + L1MC5 LINE L1 7107 7226 -735 351 286 109 11 chr15 2488006 2488181 -83207573 + L1MC5 LINE L1 7305 7496 -465 1085 189 55 103 chr15 2488188 2488358 -83207396 + MLT1B LTR MaLR 4 181 -215 2114 121 7 0 chr15 2488358 2488664 -83207090 + AluSp SINE Alu 5 312 -1 1085 189 55 103 chr15 2488664 2488749 -83207005 + MLT1B LTR MaLR 181 269 -127 2380 79 0 3 chr15 2488749 2489053 -83206701 + AluY SINE Alu 1 303 -8 1085 189 55 103 chr15 2489053 2489211 -83206543 + MLT1B LTR MaLR 269 396 0 386 243 52 66 chr15 2489216 2489504 -83206250 + L1MC5 LINE L1 7494 7777 -184 195 331 236 8 chr15 2489812 2490066 -83205688 + L2 LINE L2 2997 3308 -5 1032 254 53 22 chr15 2491422 2491745 -83204009 - MER58B DNA MER1_type -5 336 4 2068 225 70 39 chr15 2491899 2492486 -83203268 + MER77 LTR ERV1 1 605 0 2248 85 3 0 chr15 2492949 2493242 -83202512 + AluSc SINE Alu 1 294 -15 244 367 61 0 chr15 2496509 2496607 -83199147 + L2 LINE L2 3168 3271 -1 2220 92 7 0 chr15 2497043 2497338 -83198416 - AluSq SINE Alu -16 297 1 1855 163 0 0 chr15 2497347 2497636 -83198118 - AluJb SINE Alu -23 289 1 350 267 22 0 chr15 2499741 2499831 -83195923 + L1M4 LINE L1 2728 2819 -3327 514 231 35 35 chr15 2499899 2500102 -83195652 + L1M4 LINE L1 2847 3049 -3097 362 214 32 97 chr15 2500156 2500310 -83195444 + L1MC5 LINE L1 6957 7100 -861 530 295 70 44 chr15 2500478 2500932 -83194822 + L1MC5 LINE L1 7317 7782 -179 936 61 0 0 chr15 2500935 2501049 -83194705 + AluY SINE Alu 1 114 -197 2247 94 0 3 chr15 2501418 2501727 -83194027 - AluSq SINE Alu -5 308 1 314 217 80 51 chr15 2501729 2501904 -83193850 + L1MC4a LINE L1 5703 5882 -1926 1743 146 4 0 chr15 2503398 2503673 -83192081 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 2503675 2503742 -83192012 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 2503764 2503789 -83191965 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4349 212 66 27 chr15 2503789 2504598 -83191156 + L1MDa LINE L1 1483 2259 -4281 1617 161 83 9 chr15 2504598 2504934 -83190820 - MER46B DNA MER2_type 0 236 1 4349 212 66 27 chr15 2504934 2505367 -83190387 + L1MDa LINE L1 2259 2795 -3745 2003 110 27 7 chr15 2505367 2505659 -83190095 + AluSq SINE Alu 1 298 -15 4349 212 66 27 chr15 2505659 2505911 -83189843 + L1MDa LINE L1 2795 3036 -3504 369 298 159 7 chr15 2506091 2506242 -83189512 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 2507087 2507212 -83188542 + MIR3 SINE MIR 42 174 -34 324 309 59 59 chr15 2509426 2509630 -83186124 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 2510777 2510953 -83184801 + L1ME2 LINE L1 5982 6163 -1 1632 149 49 14 chr15 2510973 2511261 -83184493 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 2511889 2512153 -83183601 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 2512166 2512193 -83183561 + AT_rich Low_complexity Low_complexity 1 27 0 533 292 1 23 chr15 2512999 2514103 -83181651 + CT-rich Low_complexity Low_complexity 1 1078 0 2199 67 0 3 chr15 2514306 2514628 -83181126 + AluY SINE Alu 1 321 0 184 340 113 0 chr15 2514664 2514770 -83180984 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 2515112 2515235 -83180519 - MIR3 SINE MIR -9 199 53 1997 133 10 0 chr15 2515594 2515903 -83179851 - AluSp SINE Alu -1 312 1 532 234 188 20 chr15 2516038 2516235 -83179519 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 2517836 2517950 -83177804 - L2 LINE L2 -3 3310 3188 409 301 66 0 chr15 2518087 2518223 -83177531 - MIR SINE MIR -70 192 48 222 250 0 0 chr15 2520162 2520250 -83175504 + G-rich Low_complexity Low_complexity 2 89 0 1921 125 3 10 chr15 2520775 2521063 -83174691 + AluSx SINE Alu 1 286 -26 603 51 0 0 chr15 2521064 2521143 -83174611 + (CA)n Simple_repeat Simple_repeat 2 80 0 790 151 68 14 chr15 2521529 2521675 -83174079 + MER5A DNA MER1_type 3 156 -33 1331 186 37 15 chr15 2522420 2522689 -83173065 + AluJo SINE Alu 1 275 -37 362 238 109 39 chr15 2522798 2523144 -83172610 + L1P2 LINE L1 5174 5565 -589 2006 117 3 0 chr15 2523715 2524054 -83171700 - AluSx SINE Alu 0 340 1 709 192 103 0 chr15 2524245 2524401 -83171353 + MER5A DNA MER1_type 16 187 -2 669 293 25 37 chr15 2524631 2524952 -83170802 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 2525449 2525526 -83170228 - L1M4 LINE L1 -1310 4836 4750 1663 85 4 8 chr15 2525543 2525779 -83169975 - AluY SINE Alu -13 298 64 871 29 0 0 chr15 2525879 2525982 -83169772 - AluY SINE Alu -208 103 1 847 316 168 14 chr15 2526712 2527333 -83168421 - L2 LINE L2 -245 3068 2353 233 269 60 0 chr15 2527509 2527576 -83168178 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 2528194 2528582 -83167172 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 2528586 2528699 -83167055 + AluJo SINE Alu 2 105 -207 1657 138 0 47 chr15 2528699 2529017 -83166737 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 2529017 2529130 -83166624 + AluJo SINE Alu 105 220 -92 252 33 0 0 chr15 2529132 2529162 -83166592 + AluJb SINE Alu 88 117 -185 1425 171 3 24 chr15 2529175 2529468 -83166286 - AluSp SINE Alu -20 293 7 1453 123 13 101 chr15 2529480 2529798 -83165956 - AluSx SINE Alu -1 311 22 580 161 8 17 chr15 2529805 2529923 -83165831 + FLAM_C SINE Alu 1 117 -16 1446 143 13 30 chr15 2529934 2530235 -83165519 - AluSp SINE Alu -17 296 1 759 223 60 33 chr15 2530264 2530388 -83165366 + AluJo SINE Alu 2 136 -176 1833 111 0 21 chr15 2530388 2530676 -83165078 - AluSq SINE Alu -15 298 17 759 223 60 33 chr15 2530676 2530766 -83164988 + AluJo SINE Alu 136 222 -90 1292 86 10 15 chr15 2530807 2531004 -83164750 - AluSg/x SINE Alu -2 308 113 430 241 142 61 chr15 2531292 2531369 -83164385 + L1M4 LINE L1 2128 2197 -3949 1961 104 20 14 chr15 2531369 2531666 -83164088 + AluSg SINE Alu 7 305 -5 430 241 142 61 chr15 2531666 2532243 -83163511 + L1M4 LINE L1 2197 2835 -3311 1375 122 77 12 chr15 2533257 2533504 -83162250 - L1PA10 LINE L1 -2 6166 5904 373 172 21 0 chr15 2533530 2533623 -83162131 + (TATATG)n Simple_repeat Simple_repeat 3 97 0 301 300 100 0 chr15 2533623 2533733 -83162021 + L1MC4 LINE L1 6583 6703 -1339 391 337 0 50 chr15 2533798 2533979 -83161775 + L1MC4 LINE L1 6531 6702 -1340 200 345 0 0 chr15 2534509 2534564 -83161190 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 2534783 2535092 -83160662 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 2535287 2535412 -83160342 - MER103 DNA DNA -20 146 2 852 173 64 99 chr15 2535629 2535941 -83159813 + AluY SINE Alu 1 301 0 570 291 44 27 chr15 2535945 2536019 -83159735 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 2536019 2536409 -83159345 + MLT1A1 LTR MaLR 1 365 0 570 291 44 27 chr15 2536409 2536630 -83159124 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 2536642 2536761 -83158993 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 2536767 2536790 -83158964 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1455 160 68 14 chr15 2536839 2537120 -83158634 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 2537128 2537148 -83158606 + (T)n Simple_repeat Simple_repeat 1 20 0 287 238 16 0 chr15 2537349 2537412 -83158342 - MIR SINE MIR -112 150 87 1497 175 20 37 chr15 2537641 2537938 -83157816 - AluJo SINE Alu -20 292 1 226 288 0 0 chr15 2537952 2538018 -83157736 + L1MC4 LINE L1 6640 6705 -1337 890 220 30 56 chr15 2538193 2538497 -83157257 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 2538670 2538706 -83157048 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 456 143 0 0 chr15 2538706 2538790 -83156964 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2063 128 3 3 chr15 2539262 2539574 -83156180 - AluJb SINE Alu 0 312 1 292 214 0 0 chr15 2539664 2539720 -83156034 + MER3 DNA MER1_type 1 56 -153 864 195 53 0 chr15 2539731 2539900 -83155854 + AluJb SINE Alu 133 310 -2 374 284 121 75 chr15 2539900 2540139 -83155615 + L1MEd LINE L1 931 1180 -4939 2013 113 0 0 chr15 2540144 2540453 -83155301 - AluY SINE Alu 0 309 1 21 0 0 0 chr15 2541451 2541472 -83154282 + AT_rich Low_complexity Low_complexity 1 21 0 3805 192 62 59 chr15 2543900 2544716 -83151038 - L1MB5 LINE L1 0 6174 5361 2201 113 0 0 chr15 2544716 2545027 -83150727 - AluSx SINE Alu -1 311 1 3805 192 62 59 chr15 2545027 2545920 -83149834 - L1MB5 LINE L1 -813 5361 4457 1579 209 70 25 chr15 2545925 2546066 -83149688 - L1MB5 LINE L1 -2486 3660 3527 2323 73 0 0 chr15 2546066 2546367 -83149387 - AluY SINE Alu -10 301 1 1579 209 70 25 chr15 2546367 2546610 -83149144 - L1MB5 LINE L1 -2619 3527 3243 2135 112 0 13 chr15 2546610 2546923 -83148831 - AluSc SINE Alu 0 309 1 1579 209 70 25 chr15 2546923 2547062 -83148692 - L1MB5 LINE L1 -2903 3243 3112 926 199 0 5 chr15 2547067 2547263 -83148491 - AluJb SINE Alu 0 312 118 1429 227 56 13 chr15 2547263 2547725 -83148029 - L1MB5 LINE L1 -3052 3094 2613 1530 148 0 44 chr15 2547858 2548129 -83147625 + AluJb SINE Alu 23 281 -31 201 139 0 0 chr15 2548144 2548187 -83147567 + (TC)n Simple_repeat Simple_repeat 2 44 0 46 54 0 0 chr15 2548187 2548261 -83147493 + AT_rich Low_complexity Low_complexity 1 74 0 1871 267 50 46 chr15 2548261 2549227 -83146527 - HERVL68 LTR ERVL -1920 1117 60 2328 176 109 0 chr15 2549235 2549740 -83146014 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 2549742 2549882 -83145872 - L1ME LINE L1 -339 5782 5631 1509 173 80 43 chr15 2552931 2553343 -83142411 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 2553344 2553733 -83142021 - MLT1C LTR MaLR -46 421 3 329 319 6 0 chr15 2554562 2554731 -83141023 + (TG)n Simple_repeat Simple_repeat 1 170 0 782 141 0 0 chr15 2555208 2555329 -83140425 + FLAM_A SINE Alu 20 140 -2 2084 112 0 13 chr15 2556154 2556459 -83139295 + AluSg SINE Alu 1 301 -9 2129 86 7 13 chr15 2558035 2558339 -83137415 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 2558362 2558468 -83137286 - L1ME4a LINE L1 0 6121 5995 356 242 10 0 chr15 2560505 2560604 -83135150 + MER5A DNA MER1_type 10 98 -80 2244 85 0 0 chr15 2560838 2561132 -83134622 + AluY SINE Alu 3 296 -15 856 135 0 81 chr15 2561132 2561317 -83134437 + AluSg/x SINE Alu 134 303 -9 992 99 0 0 chr15 2561433 2561564 -83134190 - AluY SINE Alu -180 131 1 506 317 48 78 chr15 2562906 2563284 -83132470 - L1MCa LINE L1 -4673 1753 1228 348 294 59 51 chr15 2563305 2563518 -83132236 - L1MCa LINE L1 -5063 1353 1143 2258 86 10 0 chr15 2563518 2563821 -83131933 - AluSg SINE Alu -4 306 1 348 294 59 51 chr15 2563821 2564080 -83131674 - L1MCa LINE L1 -5273 1143 877 384 274 18 0 chr15 2564584 2564697 -83131057 - L1MCa LINE L1 -5954 462 348 979 197 170 3 chr15 2565271 2565423 -83130331 + MER2 DNA MER2_type 2 127 -217 2448 74 0 0 chr15 2565423 2565734 -83130020 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 2565734 2565875 -83129879 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 2565977 2566086 -83129668 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 2567130 2567304 -83128450 + MER58A DNA MER1_type 44 224 0 1727 125 30 56 chr15 2567629 2567934 -83127820 + AluSg SINE Alu 1 297 -13 261 57 0 0 chr15 2569256 2569291 -83126463 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 895 163 0 18 chr15 2570416 2570582 -83125172 - 7SLRNA srpRNA srpRNA -63 257 95 267 287 189 0 chr15 2571288 2571410 -83124344 - MIR SINE MIR -70 192 48 1761 141 0 54 chr15 2571427 2571740 -83124014 - AluSx SINE Alu -15 297 2 222 216 39 0 chr15 2572780 2572831 -83122923 - MIR SINE MIR -61 147 95 184 250 231 0 chr15 2573168 2573220 -83122534 - MIR SINE MIR -111 151 88 229 173 27 80 chr15 2574025 2574046 -83121708 - L1MC4a LINE L1 -1853 5955 5934 246 62 0 0 chr15 2574046 2574078 -83121676 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 173 27 80 chr15 2574078 2574131 -83121623 - L1MC4a LINE L1 -1874 5934 5885 322 278 70 17 chr15 2575409 2575524 -83120230 - L2 LINE L2 -5 3308 3188 286 336 131 0 chr15 2575544 2575681 -83120073 - MIR3 SINE MIR -23 185 31 342 250 10 48 chr15 2576659 2576763 -83118991 - MIR SINE MIR -115 147 48 2161 97 7 3 chr15 2576769 2577067 -83118687 - AluY SINE Alu -12 299 1 1184 179 0 5 chr15 2777080 2777275 -82918479 + MLT1A1 LTR MaLR 172 365 0 2973 277 58 64 chr15 2777437 2777588 -82918166 + L2 LINE L2 1531 1681 -1632 3486 47 21 36 chr15 2777588 2777928 -82917826 - L1PA8 LINE L1 -2 6170 5837 2348 110 0 0 chr15 2777928 2778229 -82917525 - AluSg SINE Alu -7 303 3 3486 47 21 36 chr15 2778229 2778360 -82917394 - L1PA8 LINE L1 -335 5837 5706 2973 277 58 64 chr15 2778360 2778513 -82917241 + L2 LINE L2 1681 1833 -1480 2367 79 0 23 chr15 2778513 2778816 -82916938 - AluY SINE Alu -13 298 3 2973 277 58 64 chr15 2778816 2779670 -82916084 + L2 LINE L2 1833 2676 -637 2529 70 0 6 chr15 2779670 2779983 -82915771 + AluY SINE Alu 1 311 0 2973 277 58 64 chr15 2779983 2780618 -82915136 + L2 LINE L2 2676 3313 0 2191 109 3 0 chr15 2780840 2781143 -82914611 - AluY SINE Alu -7 304 1 2274 141 0 57 chr15 2781232 2781505 -82914249 + L1PA13 LINE L1 5767 6010 -153 2350 78 0 0 chr15 2781505 2781825 -82913929 + AluY SINE Alu 1 320 0 2274 141 0 57 chr15 2781825 2781970 -82913784 + L1PA13 LINE L1 6010 6162 -1 358 241 8 0 chr15 2782055 2782311 -82913443 + (CA)n Simple_repeat Simple_repeat 1 258 0 471 291 0 22 chr15 2782362 2782544 -82913210 + (CA)n Simple_repeat Simple_repeat 1 178 0 408 264 9 5 chr15 2782555 2782774 -82912980 + (CA)n Simple_repeat Simple_repeat 1 220 0 514 294 0 17 chr15 2782881 2783061 -82912693 + (CA)n Simple_repeat Simple_repeat 2 178 0 195 114 0 0 chr15 2783122 2783157 -82912597 + (CA)n Simple_repeat Simple_repeat 2 36 0 278 342 80 35 chr15 2783735 2784133 -82911621 + L2 LINE L2 2288 2703 -611 194 350 117 15 chr15 2785478 2785615 -82910139 + L2 LINE L2 2916 3066 -206 493 269 15 8 chr15 2786226 2786360 -82909394 - L2 LINE L2 0 3313 3179 5687 129 25 18 chr15 2786448 2787395 -82908359 - L1PA15 LINE L1 0 6165 5213 * 10225 228 32 7 chr15 2787383 2789918 -82905836 - L1PA15 LINE L1 -1270 4876 2280 811 285 90 42 chr15 2791040 2791419 -82904335 + MLT1J2 LTR MaLR 39 435 -15 552 335 41 61 chr15 2791438 2791951 -82903803 - L2 LINE L2 -261 3052 2549 2951 191 20 42 chr15 2792028 2792621 -82903133 + LTR22 LTR ERVK 1 580 0 2291 231 23 0 chr15 2793328 2793891 -82901863 - L1M4 LINE L1 -813 5333 4758 1602 224 107 95 chr15 2793883 2794441 -82901313 - L1M4 LINE L1 -2069 4077 3507 * 2461 44 0 17 chr15 2794441 2794734 -82901020 + AluY SINE Alu 1 288 -23 1602 224 107 95 chr15 2794734 2794873 -82900881 - L1M4 LINE L1 -2639 3507 3371 398 253 11 0 chr15 2795017 2795108 -82900646 - L1MCb LINE L1 -5880 165 74 2061 113 3 33 chr15 2795753 2796054 -82899700 - AluSx SINE Alu -20 292 1 2155 120 0 23 chr15 2796323 2796631 -82899123 - AluSx SINE Alu -11 301 1 2483 47 7 3 chr15 2797025 2797323 -82898431 - AluY SINE Alu -12 299 1 2091 281 103 20 chr15 2797445 2798262 -82897492 + L1MD2 LINE L1 272 1156 -5384 2513 214 27 102 chr15 2798300 2799025 -82896729 + L1MD2 LINE L1 3906 4555 -1985 2322 88 0 10 chr15 2799025 2799322 -82896432 + AluY SINE Alu 1 294 -17 2513 214 27 102 chr15 2799322 2799475 -82896279 + L1MD2 LINE L1 4555 4718 -1822 206 61 0 30 chr15 2799515 2799530 -82896224 + (TATAA)n Simple_repeat Simple_repeat 1 15 -17 2248 103 0 7 chr15 2799530 2799821 -82895933 + AluSq SINE Alu 1 289 -24 206 61 0 30 chr15 2799821 2799838 -82895916 + (TATAA)n Simple_repeat Simple_repeat 15 32 0 1242 246 34 34 chr15 2799852 2800270 -82895484 + L1MD2 LINE L1 4766 5183 -1357 2488 242 107 62 chr15 2800328 2800493 -82895261 + L1MD2 LINE L1 5196 5352 -1401 194 0 0 37 chr15 2800493 2800520 -82895234 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2488 242 107 62 chr15 2800520 2800916 -82894838 + L1MD2 LINE L1 5352 5729 -1024 2112 121 7 3 chr15 2800916 2801213 -82894541 + AluSx SINE Alu 3 300 -12 2488 242 107 62 chr15 2801213 2801423 -82894331 + L1MD2 LINE L1 5729 5928 -825 2722 45 0 0 chr15 2801423 2801734 -82894020 + AluY SINE Alu 1 311 0 2488 242 107 62 chr15 2801734 2802455 -82893299 + L1MD2 LINE L1 5928 6741 -12 463 279 73 62 chr15 2804188 2804529 -82891225 - L1ME LINE L1 -420 5701 5357 2270 95 3 19 chr15 2804679 2804995 -82890759 - AluY SINE Alu 0 311 1 420 300 56 4 chr15 2807051 2807284 -82888470 + L1 LINE L1 3535 3779 -2367 208 302 0 44 chr15 2809673 2809855 -82885899 + (CGGGG)n Simple_repeat Simple_repeat 3 176 0 246 269 13 13 chr15 2811495 2811573 -82884181 - L2 LINE L2 -564 2750 2673 429 183 43 43 chr15 2812807 2812900 -82882854 - Tigger7 DNA MER2_type 0 2487 2395 1817 162 20 0 chr15 2812905 2813199 -82882555 - Tigger7 DNA MER2_type -219 514 215 1440 192 48 0 chr15 2813199 2813449 -82882305 + Tigger7 DNA MER2_type 1 262 -2225 557 160 0 40 chr15 2813452 2813552 -82882202 + Tigger7 DNA MER2_type 2492 2587 0 197 259 0 52 chr15 2815046 2815104 -82880650 - L2 LINE L2 -2 3311 3257 1577 182 0 57 chr15 2815720 2816038 -82879716 - AluJo SINE Alu -12 300 1 1668 256 63 47 chr15 2816074 2816321 -82879433 - L1ME2 LINE L1 -2 6162 5921 195 42 0 0 chr15 2816321 2816345 -82879409 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 1668 256 63 47 chr15 2816345 2816821 -82878933 - L1ME2 LINE L1 -243 5921 5427 340 213 56 46 chr15 2816806 2816914 -82878840 - L1ME LINE L1 -598 5566 5458 * 1846 168 80 105 chr15 2816985 2817520 -82878234 - L1MC2 LINE L1 -9 6335 5814 3337 185 6 12 chr15 2817525 2818178 -82877576 - L1MC1 LINE L1 -3 6330 5682 2262 91 3 10 chr15 2818180 2818478 -82877276 - AluY SINE Alu -14 297 2 1622 273 75 24 chr15 2818480 2818651 -82877103 - L1MCc LINE L1 -3014 3927 3766 2323 79 4 0 chr15 2818651 2818972 -82876782 - AluSc SINE Alu 0 322 1 1622 273 75 24 chr15 2818972 2819624 -82876130 - L1MCc LINE L1 -3175 3766 3061 669 206 46 88 chr15 2819645 2819905 -82875849 - MLT2B1 LTR ERVL -41 491 282 363 188 62 21 chr15 2819935 2820031 -82875723 - MLT2D LTR ERVL -314 100 1 635 264 108 16 chr15 2820084 2820463 -82875291 - L1MCc LINE L1 -4134 2988 2575 341 86 17 0 chr15 2820493 2820551 -82875203 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 25 0 0 0 chr15 2820736 2820761 -82874993 + AT_rich Low_complexity Low_complexity 1 25 0 513 249 35 46 chr15 2820843 2821040 -82874714 - L2 LINE L2 -6 3307 3113 225 108 0 0 chr15 2821731 2821768 -82873986 + (CA)n Simple_repeat Simple_repeat 2 38 0 672 278 28 0 chr15 2821776 2821988 -82873766 - L1MCc LINE L1 -4604 2518 2301 5006 169 10 54 chr15 2821990 2822494 -82873260 + L1MA8 LINE L1 4784 5309 -982 2358 105 0 3 chr15 2822494 2822800 -82872954 + AluSx SINE Alu 6 310 -2 5006 169 10 54 chr15 2822800 2823857 -82871897 + L1MA8 LINE L1 5309 6287 -4 713 315 47 25 chr15 2823926 2824743 -82871011 - L1MCc LINE L1 -4888 1535 1180 186 43 0 0 chr15 2824998 2825021 -82870733 + (TTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 2826606 2826628 -82869126 + AT_rich Low_complexity Low_complexity 1 22 0 658 311 128 19 chr15 2827298 2827713 -82868041 + L2 LINE L2 2839 3298 -15 446 305 24 12 chr15 2827855 2828019 -82867735 + MIR SINE MIR 24 189 -73 23 0 0 0 chr15 2828239 2828262 -82867492 + AT_rich Low_complexity Low_complexity 1 23 0 2137 90 11 0 chr15 2828270 2828547 -82867207 + AluSg SINE Alu 1 280 -30 2523 59 3 0 chr15 2828547 2828852 -82866902 + AluY SINE Alu 1 306 -5 2600 222 64 67 chr15 2828889 2829733 -82866021 - L1MD2 LINE L1 -4 6355 5510 2540 52 3 3 chr15 2829733 2830043 -82865711 - AluY SINE Alu -1 310 1 2600 222 64 67 chr15 2830043 2830363 -82865391 - L1MD2 LINE L1 -849 5510 5191 2432 73 0 6 chr15 2830363 2830676 -82865078 + AluY SINE Alu 1 311 0 2600 222 64 67 chr15 2830676 2831261 -82864493 - L1MD2 LINE L1 -1168 5191 4622 219 36 0 0 chr15 2831421 2831449 -82864305 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1374 196 4 0 chr15 2831451 2831691 -82864063 - AluJb SINE Alu -30 282 42 2114 128 0 0 chr15 2832583 2832872 -82862882 + AluSx SINE Alu 1 289 -23 206 57 57 0 chr15 2834239 2834274 -82861480 + A-rich Low_complexity Low_complexity 3 39 0 1019 128 4 149 chr15 2834333 2834568 -82861186 + MLT1B LTR MaLR 190 390 0 271 290 0 0 chr15 2835164 2835226 -82860528 + MER81 DNA DNA 32 93 -21 2275 244 66 46 chr15 2835229 2836078 -82859676 - L1MD2 LINE L1 -1538 4608 3743 294 70 0 23 chr15 2836808 2836851 -82858903 + U2 snRNA snRNA 1 42 -146 376 341 60 27 chr15 2837005 2837304 -82858450 + L2 LINE L2 2301 2609 -705 254 321 43 36 chr15 2837415 2837555 -82858199 + L2 LINE L2 1959 2099 -1215 2064 131 24 3 chr15 2837803 2838093 -82857661 + AluJo SINE Alu 1 296 -16 231 178 78 67 chr15 2838834 2838924 -82856830 - MLT1L LTR MaLR -5 610 520 243 274 39 10 chr15 2839284 2839386 -82856368 + L1MC4 LINE L1 6600 6704 -1338 * 252 255 38 9 chr15 2839299 2839405 -82856349 - L1MC4 LINE L1 -1339 6703 6595 460 236 27 0 chr15 2839405 2839625 -82856129 + (TA)n Simple_repeat Simple_repeat 1 225 0 232 245 0 82 chr15 2839660 2839758 -82855996 - L1MC4 LINE L1 -1339 6703 6614 183 235 12 24 chr15 2839759 2839844 -82855910 + (TA)n Simple_repeat Simple_repeat 1 84 0 226 277 9 71 chr15 2839845 2839957 -82855797 + L1MC4 LINE L1 6614 6718 -1324 811 186 0 0 chr15 2840118 2840242 -82855512 - FLAM_C SINE Alu -18 125 2 2427 80 0 0 chr15 2840339 2840638 -82855116 + AluY SINE Alu 1 299 -12 279 318 45 18 chr15 2840649 2840759 -82854995 + L2 LINE L2 3160 3272 0 420 324 82 72 chr15 2841281 2841587 -82854167 + L2 LINE L2 2964 3272 0 2423 64 3 3 chr15 2841830 2842126 -82853628 - L1PA6 LINE L1 -1 6153 5858 2487 54 3 0 chr15 2842126 2842421 -82853333 + AluY SINE Alu 1 296 -15 3085 38 6 0 chr15 2842421 2842786 -82852968 - L1PA5 LINE L1 -1898 4248 3882 9924 36 0 0 chr15 2842786 2844684 -82851070 + L1PA5 LINE L1 4249 6149 -5 240 35 0 0 chr15 2844684 2844713 -82851041 + (TA)n Simple_repeat Simple_repeat 1 29 0 231 71 0 0 chr15 2844714 2844742 -82851012 - L1PA6 LINE L1 -258 5873 5846 * 756 16 0 157 chr15 2844739 2844805 -82850949 + L1P2 LINE L1 5391 5431 -723 2538 51 3 6 chr15 2844805 2845117 -82850637 + AluY SINE Alu 1 311 0 756 16 0 157 chr15 2845117 2845171 -82850583 + L1P2 LINE L1 5431 5492 -662 2115 125 0 0 chr15 2845344 2845641 -82850113 - AluSx SINE Alu -15 297 1 180 0 0 0 chr15 2845656 2845676 -82850078 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2329 53 3 7 chr15 2845678 2845962 -82849792 - AluY SINE Alu -24 287 5 189 419 31 16 chr15 2846046 2846175 -82849579 - L2 LINE L2 -1 3271 3141 26 0 0 0 chr15 2846440 2846466 -82849288 + AT_rich Low_complexity Low_complexity 1 26 0 253 354 97 0 chr15 2848011 2848155 -82847599 + MIR SINE MIR 31 188 -74 26 30 0 0 chr15 2848219 2848252 -82847502 + AT_rich Low_complexity Low_complexity 1 33 0 424 318 53 11 chr15 2848302 2848491 -82847263 + MIR SINE MIR 28 224 -38 21 57 0 0 chr15 2848496 2848531 -82847223 + AT_rich Low_complexity Low_complexity 1 35 0 239 311 36 44 chr15 2849052 2849300 -82846454 + L1 LINE L1 3532 3777 -2369 22 35 0 0 chr15 2850591 2850620 -82845134 + GC_rich Low_complexity Low_complexity 1 29 0 182 320 103 49 chr15 2850656 2850859 -82844895 - L2 LINE L2 -850 2464 2251 269 186 14 0 chr15 2851921 2851991 -82843763 + CT-rich Low_complexity Low_complexity 3 73 0 2120 114 7 7 chr15 2852199 2852506 -82843248 + AluSx SINE Alu 1 307 -5 195 298 41 50 chr15 2854243 2854364 -82841390 - L2 LINE L2 -609 2705 2586 225 238 202 24 chr15 2854367 2854451 -82841303 - L2 LINE L2 -1 3271 3173 955 273 73 23 chr15 2855292 2855659 -82840095 - L1M4c LINE L1 -2358 4024 3630 2037 147 144 5 chr15 2855659 2856034 -82839720 - MSTA LTR MaLR 0 428 2 955 273 73 23 chr15 2856034 2856105 -82839649 - L1M4c LINE L1 -2752 3630 3564 466 341 61 29 chr15 2856275 2856522 -82839232 + L2 LINE L2 2068 2336 -978 1514 199 14 7 chr15 2856522 2856842 -82838912 - AluJb SINE Alu 0 322 1 466 341 61 29 chr15 2856842 2857001 -82838753 + L2 LINE L2 2336 2488 -826 897 244 67 8 chr15 2857186 2857424 -82838330 - MLT1C LTR MaLR -2 465 214 27 62 0 0 chr15 2857826 2857874 -82837880 + AT_rich Low_complexity Low_complexity 1 48 0 1289 288 118 45 chr15 2857986 2858671 -82837083 - MER21B LTR ERV1 -128 735 1 3516 120 14 10 chr15 2858794 2859302 -82836452 - MER9 LTR ERVK -1 510 1 31286 83 6 5 chr15 2859305 2863637 -82832117 - HERVK9 LTR ERVK -2 8033 1669 2285 85 0 0 chr15 2863637 2863940 -82831814 + AluY SINE Alu 1 303 0 31286 83 6 5 chr15 2863940 2863986 -82831768 - HERVK9 LTR ERVK -6366 1669 1625 4469 101 18 21 chr15 2863986 2864650 -82831104 - HERVK9 LTR ERVK -5254 662 1 3467 99 47 12 chr15 2864650 2865144 -82830610 - MER9 LTR ERVK 0 511 1 2846 253 36 17 chr15 2865358 2866391 -82829363 - L1ME1 LINE L1 -5 6161 5006 518 273 72 36 chr15 2866842 2867201 -82828553 - L1M4c LINE L1 -2815 3567 3196 1188 244 107 46 chr15 2867202 2867831 -82827923 - L1M4c LINE L1 -3229 3153 2477 2112 139 0 0 chr15 2867831 2868126 -82827628 + AluSx SINE Alu 1 295 -17 1188 244 107 46 chr15 2868126 2868185 -82827569 - L1M4c LINE L1 -3905 2477 2423 2323 234 28 14 chr15 2868196 2868765 -82826989 - L1MD3 LINE L1 -8 7987 7411 414 294 8 0 chr15 2868769 2868888 -82826866 - MLT1F1 LTR MaLR -447 120 1 1322 240 11 35 chr15 2868889 2869260 -82826494 - L1MD3 LINE L1 -718 7277 6916 249 57 0 0 chr15 2869260 2869295 -82826459 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 167 0 0 chr15 2869411 2869459 -82826295 - L1M4c LINE L1 -4740 1823 1776 247 137 39 0 chr15 2869460 2869511 -82826243 - L1M4c LINE L1 -4701 1681 1629 380 286 25 26 chr15 2869536 2869547 -82826207 - L1M4c LINE L1 -4816 1566 1556 2236 114 0 19 chr15 2869547 2869864 -82825890 - AluY SINE Alu 0 311 1 2323 119 0 0 chr15 2869864 2870174 -82825580 - AluSq SINE Alu -3 310 1 380 286 25 26 chr15 2870174 2870361 -82825393 - L1M4c LINE L1 -4824 1558 1266 324 143 0 0 chr15 2870386 2870435 -82825319 - Alu SINE Alu -252 50 2 1910 247 84 13 chr15 2870435 2871066 -82824688 - L1MCc LINE L1 -4823 2118 1443 288 302 68 27 chr15 2871380 2871602 -82824152 - MER41B LTR ERV1 -230 405 175 300 303 10 0 chr15 2871702 2871801 -82823953 - PRIMA41-int LTR ERV1 -4 7752 7653 1966 149 0 10 chr15 2872735 2873036 -82822718 - AluSx SINE Alu -13 299 2 653 360 38 7 chr15 2873337 2873787 -82821967 - PRIMA41-int LTR ERV1 -1934 5822 5359 267 266 0 0 chr15 2874188 2874252 -82821502 - PRIMA41-int LTR ERV1 -1838 5253 5190 2009 138 0 3 chr15 2874546 2874842 -82820912 + AluSx SINE Alu 1 295 -17 2526 71 3 0 chr15 2875213 2875523 -82820231 - AluY SINE Alu 0 311 1 364 269 105 46 chr15 2875764 2875983 -82819771 - MER41B LTR ERV1 -220 415 184 822 190 0 0 chr15 2876018 2876160 -82819594 - L1PA15 LINE L1 0 6165 6024 1122 220 36 11 chr15 2876239 2876539 -82819215 - L1MCc LINE L1 -5711 711 58 500 216 36 91 chr15 2876593 2876818 -82818936 - L1MEc LINE L1 -4203 2281 2006 320 220 34 30 chr15 2876783 2876946 -82818808 + (TA)n Simple_repeat Simple_repeat 1 219 -69 * 26 74 0 0 chr15 2876946 2877000 -82818754 + AT_rich Low_complexity Low_complexity 1 54 0 320 220 34 30 chr15 2877000 2877071 -82818683 + (TA)n Simple_repeat Simple_repeat 219 288 0 274 243 45 62 chr15 2877026 2877269 -82818485 - L1MEc LINE L1 -4361 2065 1827 * 40901 34 23 2 chr15 2877272 2883296 -82812458 + L1PA3 LINE L1 2 6152 -3 24 0 0 0 chr15 2883296 2883320 -82812434 + AT_rich Low_complexity Low_complexity 1 24 0 476 246 44 60 chr15 2883328 2883576 -82812178 - L1MEc LINE L1 -4668 1939 1696 772 122 0 0 chr15 2883915 2884038 -82811716 - AluSg/x SINE Alu -1 308 186 3203 173 58 6 chr15 2884038 2884717 -82811037 - L1MA8 LINE L1 -342 5949 5194 1393 188 117 56 chr15 2884717 2884809 -82810945 + MER47B DNA MER2_type 1 86 -2237 2500 57 0 0 chr15 2884809 2885106 -82810648 - AluY SINE Alu -14 297 1 1393 188 117 56 chr15 2885106 2885407 -82810347 + MER47B DNA MER2_type 86 418 0 3203 173 58 6 chr15 2885407 2885817 -82809937 - L1MA8 LINE L1 -1097 5194 4807 1015 98 0 0 chr15 2885817 2885949 -82809805 - AluY SINE Alu -179 132 1 1242 177 24 0 chr15 2885956 2886204 -82809550 - L1MA8 LINE L1 -1330 4816 4563 520 273 147 74 chr15 2886490 2887326 -82808428 + L1M2 LINE L1 424 1403 -5446 1547 195 25 6 chr15 2887471 2887830 -82807924 - L1MA8 LINE L1 -1613 4533 4168 619 167 0 9 chr15 2887831 2887939 -82807815 + AluSq/x SINE Alu 2 108 -205 1686 126 0 4 chr15 2887939 2888178 -82807576 + AluSx SINE Alu 62 299 -13 2299 75 16 0 chr15 2888507 2888813 -82806941 - AluY SINE Alu 0 311 1 418 220 9 0 chr15 2888967 2889076 -82806678 - L1MEc LINE L1 -4110 2286 2177 239 189 0 19 chr15 2889289 2889342 -82806412 + MLT1A1 LTR MaLR 82 133 -232 2236 151 9 16 chr15 2890784 2891216 -82804538 + L1 LINE L1 4548 4976 -1170 274 226 7 55 chr15 2891331 2891477 -82804277 + (CACCC)n Simple_repeat Simple_repeat 4 142 0 391 218 23 74 chr15 2891701 2891917 -82803837 - L1MEc LINE L1 -4355 2041 1837 744 260 0 40 chr15 2891978 2892201 -82803553 - MER20 DNA MER1_type -5 214 1 295 283 0 19 chr15 2892201 2892307 -82803447 - L1MEc LINE L1 -4627 1769 1666 723 181 30 0 chr15 2892310 2892476 -82803278 - L1MB5 LINE L1 -6 6168 5998 2101 244 45 6 chr15 2892485 2893178 -82802576 - L1MB5 LINE L1 -221 5953 5230 450 160 13 173 chr15 2893182 2893407 -82802347 + L1M4 LINE L1 3718 3906 -2240 * 991 197 43 36 chr15 2893385 2893689 -82802065 - L1MCa LINE L1 -4408 2236 1931 1661 185 10 3 chr15 2893691 2893988 -82801766 - AluJb SINE Alu -2 310 12 964 223 137 42 chr15 2894041 2894404 -82801350 - L1M4 LINE L1 -496 5678 5267 1787 215 3 8 chr15 2894404 2894771 -82800983 + MLT1A1 LTR MaLR 1 365 0 964 223 137 42 chr15 2894771 2894825 -82800929 - L1M4 LINE L1 -907 5267 5220 2301 76 0 3 chr15 2894969 2895272 -82800482 - AluY SINE Alu -9 302 1 299 301 59 30 chr15 2895333 2895457 -82800297 - L1MCa LINE L1 -6298 244 110 215 31 31 0 chr15 2895457 2895489 -82800265 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 301 59 30 chr15 2895489 2895567 -82800187 - L1MCa LINE L1 -6432 110 36 347 301 36 30 chr15 2895602 2895964 -82799790 - L1MEc LINE L1 -4724 1672 1309 409 298 95 34 chr15 2896022 2896465 -82799289 - L1MEc LINE L1 -5224 1172 703 608 260 27 18 chr15 2896476 2896699 -82799055 - L1MEc LINE L1 -5728 668 444 2127 106 30 0 chr15 2896819 2897121 -82798633 - AluY SINE Alu 0 311 1 2201 129 0 3 chr15 2898198 2898508 -82797246 - AluSx SINE Alu -3 309 1 198 0 0 0 chr15 2898570 2898592 -82797162 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 324 236 126 50 chr15 2898698 2898897 -82796857 - L1MC/D LINE L1 -2338 5470 5257 2528 60 0 0 chr15 2899072 2899371 -82796383 - AluY SINE Alu -12 299 1 347 252 148 82 chr15 2899461 2899731 -82796023 - L1ME LINE L1 -347 5774 5487 2119 113 3 7 chr15 2899876 2900186 -82795568 - AluSx SINE Alu -3 309 1 189 74 0 0 chr15 2900686 2900713 -82795041 + (T)n Simple_repeat Simple_repeat 1 27 0 384 168 38 23 chr15 2901181 2901312 -82794442 + GA-rich Low_complexity Low_complexity 2 134 0 293 274 43 26 chr15 2901415 2901532 -82794222 + MIR SINE MIR 50 168 -94 214 135 19 19 chr15 2901669 2901721 -82794033 + T-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr15 2901818 2901847 -82793907 + AT_rich Low_complexity Low_complexity 1 29 0 302 311 79 66 chr15 2902168 2902486 -82793268 - L1ME4a LINE L1 -199 5922 5601 22 0 0 0 chr15 2903022 2903044 -82792710 + AT_rich Low_complexity Low_complexity 1 22 0 390 195 8 24 chr15 2904012 2904135 -82791619 - L1MC/D LINE L1 -1709 4437 4317 2285 231 89 16 chr15 2904143 2904885 -82790869 - L1MD1 LINE L1 -19 6223 5428 573 203 152 0 chr15 2904896 2905034 -82790720 - AluJo SINE Alu -6 296 138 311 154 0 0 chr15 2905070 2905122 -82790632 - AluJo SINE Alu -168 134 83 950 149 37 80 chr15 2905123 2905201 -82790553 - AluJo SINE Alu -132 180 100 1740 48 5 0 chr15 2905201 2905410 -82790344 + AluY SINE Alu 102 311 0 950 149 37 80 chr15 2905410 2905519 -82790235 - AluJo SINE Alu -212 100 1 1208 227 52 44 chr15 2905519 2905702 -82790052 - L1MD1 LINE L1 -743 5403 5223 5884 21 0 0 chr15 2905702 2906378 -82789376 - L1PA3 LINE L1 -2 6153 5478 1208 227 52 44 chr15 2906378 2906865 -82788889 - L1MD1 LINE L1 -923 5223 4769 856 168 0 66 chr15 2906873 2907023 -82788731 - L1MB7 LINE L1 -16 6168 6032 2099 133 0 0 chr15 2907023 2907325 -82788429 + AluSx SINE Alu 1 302 -10 856 168 0 66 chr15 2907325 2907370 -82788384 - L1MB7 LINE L1 -152 6032 5986 342 177 0 0 chr15 2907370 2907432 -82788322 - AluJ/FLAM SINE Alu -240 62 1 997 226 75 81 chr15 2907432 2907579 -82788175 - L1M4 LINE L1 -958 5424 5278 188 35 35 0 chr15 2907579 2907608 -82788146 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 997 226 75 81 chr15 2907608 2908096 -82787658 - L1M4 LINE L1 -1104 5278 4791 1578 239 23 8 chr15 2908096 2908486 -82787268 - MSTD LTR MaLR 0 396 1 997 226 75 81 chr15 2908486 2908552 -82787202 - L1M4 LINE L1 -1591 4791 4726 2629 176 41 9 chr15 2908558 2909097 -82786657 - L1PA16 LINE L1 -2 6164 5609 897 196 18 5 chr15 2909099 2909318 -82786436 + L1 LINE L1 4368 4589 -1557 4804 256 75 17 chr15 2909321 2910624 -82785130 - L1M4 LINE L1 -1653 4729 3503 2231 113 0 3 chr15 2910624 2910925 -82784829 - AluSq SINE Alu -13 300 1 4804 256 75 17 chr15 2910925 2911997 -82783757 - L1M4 LINE L1 -2879 3503 2221 517 192 8 0 chr15 2912001 2912131 -82783623 - L1MA4A LINE L1 -5 6298 6168 572 81 23 0 chr15 2912137 2912223 -82783531 - L1MA1 LINE L1 -4 6298 6211 2519 83 0 0 chr15 2912223 2912574 -82783180 + L1M1 LINE L1 5429 5779 -525 1034 181 48 4 chr15 2912567 2912794 -82782960 - L1MA4 LINE L1 -118 6182 5946 * 21 71 0 0 chr15 2912794 2912836 -82782918 + AT_rich Low_complexity Low_complexity 1 42 0 2385 86 0 10 chr15 2912912 2913225 -82782529 - AluY SINE Alu -1 310 1 385 41 0 0 chr15 2913249 2913298 -82782456 - L1PA7 LINE L1 -8 6146 6098 2009 107 13 0 chr15 2913298 2913596 -82782158 + L1P3 LINE L1 5427 5728 -426 3430 157 26 26 chr15 2913611 2914012 -82781742 - L1MA4 LINE L1 -359 5941 5541 2648 20 0 0 chr15 2914012 2914310 -82781444 - AluYa5 SINE Alu -13 298 1 3430 157 26 26 chr15 2914310 2914794 -82780960 - L1MA4 LINE L1 -759 5541 5054 1954 129 0 0 chr15 2914794 2915057 -82780697 - AluSx SINE Alu -16 296 34 3430 157 26 26 chr15 2915057 2915120 -82780634 - L1MA4 LINE L1 -1246 5054 4992 22 35 0 0 chr15 2915134 2915163 -82780591 + AT_rich Low_complexity Low_complexity 1 29 0 1720 116 0 0 chr15 2915163 2915388 -82780366 - AluSc SINE Alu -27 282 58 395 285 5 24 chr15 2915393 2915600 -82780154 - L1M4c LINE L1 -4182 2202 2000 1761 280 50 30 chr15 2915608 2916548 -82779206 - L1M4 LINE L1 -1554 5294 4336 1781 244 42 72 chr15 2916559 2916705 -82779049 + MER77 LTR ERV1 1 150 -455 2435 83 0 3 chr15 2916705 2917017 -82778737 - AluY SINE Alu 0 311 1 1781 244 42 72 chr15 2917017 2917485 -82778269 + MER77 LTR ERV1 150 597 -8 205 138 0 0 chr15 2917555 2917584 -82778170 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1233 326 14 15 chr15 2917584 2918176 -82777578 + MER21-int LTR ERV1 3079 3669 -3089 1479 227 47 31 chr15 2918176 2919001 -82776753 - L1M4 LINE L1 -3415 3433 2598 260 98 0 39 chr15 2919006 2919057 -82776697 - Alu SINE Alu 0 300 252 2214 194 10 12 chr15 2919071 2919587 -82776167 - L1M4 LINE L1 -4916 1933 1419 229 300 0 0 chr15 2919673 2919733 -82776021 + L1M2b LINE L1 679 738 -6471 815 307 86 79 chr15 2919797 2920913 -82774841 - L1M4 LINE L1 -5446 1403 280 594 311 10 19 chr15 2921092 2921298 -82774456 + MER21-int LTR ERV1 1669 1872 -2319 2312 76 0 45 chr15 2921369 2921683 -82774071 - AluY SINE Alu -10 301 2 222 191 0 0 chr15 2921883 2921930 -82773824 + (CA)n Simple_repeat Simple_repeat 2 48 0 2038 158 3 0 chr15 2921952 2922263 -82773491 - AluSx SINE Alu 0 312 1 2263 172 17 2 chr15 2922683 2923091 -82772663 - MSTB1 LTR MaLR -15 417 4 2955 280 40 68 chr15 2923454 2923774 -82771980 + MER21-int LTR ERV1 2014 2341 -1850 3661 110 178 0 chr15 2923774 2924358 -82771396 + LTR12 LTR ERV1 1 688 0 2955 280 40 68 chr15 2924358 2925474 -82770280 + MER21-int LTR ERV1 2341 3410 -781 367 287 17 6 chr15 2925494 2925668 -82770086 - L1M4 LINE L1 -3229 2917 2742 3375 191 20 26 chr15 2925819 2926610 -82769144 + L1MB3 LINE L1 5397 6182 -1 182 387 91 5 chr15 2926741 2926927 -82768827 - L2 LINE L2 -2298 1016 815 22 0 0 0 chr15 2929637 2929659 -82766095 + AT_rich Low_complexity Low_complexity 1 22 0 3557 189 52 14 chr15 2930876 2931644 -82764110 - L1MC3 LINE L1 -1677 6526 5730 1498 192 15 4 chr15 2931681 2931940 -82763814 + Tigger7 DNA MER2_type 59 320 -413 2360 187 30 117 chr15 2931940 2932582 -82763172 - LTR8 LTR ERV1 0 691 -5 2758 88 6 30 chr15 2932582 2932817 -82762937 + THE1A LTR MaLR 1 225 -130 2510 67 0 0 chr15 2932817 2933114 -82762640 + AluY SINE Alu 1 297 -14 2758 88 6 30 chr15 2933114 2933242 -82762512 + THE1A LTR MaLR 225 355 0 12047 96 7 13 chr15 2933242 2934831 -82760923 + THE1A-int LTR MaLR 1 1580 0 2784 93 6 0 chr15 2934831 2935184 -82760570 + THE1A LTR MaLR 1 355 0 2360 187 30 117 chr15 2935184 2935292 -82760462 - LTR8 LTR ERV1 -571 120 4 1104 131 47 0 chr15 2935293 2935484 -82760270 + Tigger7 DNA MER2_type 315 514 -219 452 221 0 0 chr15 2935506 2935592 -82760162 + Tigger7 DNA MER2_type 2501 2586 -1 744 241 19 6 chr15 2935645 2935803 -82759951 - AluJb SINE Alu -151 161 2 477 257 62 24 chr15 2935807 2936017 -82759737 - L1MC3 LINE L1 -878 5686 5469 1183 83 25 0 chr15 2936023 2936180 -82759574 - MLT2A2 LTR ERVL 0 453 293 1915 131 37 7 chr15 2936228 2936526 -82759228 - MLT2A2 LTR ERVL -145 308 2 402 191 22 226 chr15 2936526 2936661 -82759093 - L1MC3 LINE L1 -1096 5468 5434 2092 131 3 0 chr15 2936661 2936952 -82758802 - AluSq SINE Alu -21 292 1 402 191 22 226 chr15 2936952 2937135 -82758619 - L1MC3 LINE L1 -1130 5434 5215 3318 255 76 50 chr15 2937466 2938149 -82757605 - L1MC3 LINE L1 -1336 5228 4564 4901 15 0 2 chr15 2938149 2938673 -82757081 + L1PA3 LINE L1 5629 6151 -4 3318 255 76 50 chr15 2938673 2939483 -82756271 - L1MC3 LINE L1 -2000 4564 3697 268 230 10 115 chr15 2939549 2939749 -82756005 - L1MC3 LINE L1 -4892 1672 1494 315 203 14 72 chr15 2939862 2940000 -82755754 - L1MC3 LINE L1 -5145 1419 1290 11395 202 19 19 chr15 2940001 2941527 -82754227 - L1PA16 LINE L1 -3 6163 4639 2066 161 30 25 chr15 2941527 2941888 -82753866 + THE1B LTR MaLR 1 363 -1 11395 202 19 19 chr15 2941888 2942152 -82753602 - L1PA16 LINE L1 -1527 4639 4377 2504 66 0 0 chr15 2942152 2942454 -82753300 - AluY SINE Alu -9 302 1 11395 202 19 19 chr15 2942454 2944349 -82751405 - L1PA16 LINE L1 -1789 4377 2482 656 265 100 0 chr15 2944490 2944739 -82751015 - L1MEc LINE L1 -3676 2453 2180 * 1866 233 72 39 chr15 2944718 2944744 -82751010 - L1MC3 LINE L1 -4849 1196 1172 698 159 0 0 chr15 2944744 2944851 -82750903 - U6 snRNA snRNA 0 107 1 1866 233 72 39 chr15 2944851 2945586 -82750168 - L1MC3 LINE L1 -4873 1172 539 288 336 19 0 chr15 2945726 2945833 -82749921 - L1MC3 LINE L1 -5612 433 325 397 286 35 35 chr15 2945979 2946178 -82749576 + L1ME2 LINE L1 4967 5165 -981 1805 274 114 16 chr15 2946206 2947010 -82748744 + L1ME2 LINE L1 5281 6163 -1 3110 175 44 39 chr15 2949573 2949927 -82745827 - L1MC3 LINE L1 -31 7754 7392 1814 141 7 14 chr15 2949927 2950231 -82745523 - AluSx SINE Alu 0 304 3 3110 175 44 39 chr15 2950231 2950550 -82745204 - L1MC3 LINE L1 -393 7392 7076 2162 117 0 0 chr15 2950933 2951224 -82744530 + AluSx SINE Alu 1 291 -21 327 293 151 42 chr15 2951766 2952005 -82743749 - MLT1I LTR MaLR -19 390 126 1079 162 50 10 chr15 2952110 2952308 -82743446 - MLT1I-int LTR MaLR -170 1565 1360 341 229 20 27 chr15 2952304 2952416 -82743338 - L1MEc LINE L1 -4891 1690 1572 * 420 299 92 56 chr15 2954222 2954506 -82741248 - MLT1I LTR MaLR -18 391 98 245 244 89 22 chr15 2955767 2955857 -82739897 + MER114 LTR ERV 3 98 -550 21 0 0 0 chr15 2955866 2955887 -82739867 + AT_rich Low_complexity Low_complexity 1 21 0 325 224 53 118 chr15 2956106 2956258 -82739496 + L1ME2 LINE L1 1235 1525 -4891 * 1784 199 50 8 chr15 2956254 2956615 -82739139 + MLT1A1-int LTR MaLR 1360 1735 0 1128 247 117 6 chr15 2956620 2956944 -82738810 + MLT1A1 LTR MaLR 6 365 0 445 331 53 34 chr15 2957040 2957360 -82738394 + L1ME2 LINE L1 2069 2394 -4213 1135 250 117 27 chr15 2957683 2958318 -82737436 + L1ME2 LINE L1 4661 5352 -1074 1281 202 98 12 chr15 2958656 2958983 -82736771 + L1ME2 LINE L1 6069 6423 -21 21 0 0 0 chr15 2959318 2959339 -82736415 + AT_rich Low_complexity Low_complexity 1 21 0 518 221 130 10 chr15 2959350 2959558 -82736196 - MER114 LTR ERV -274 374 142 591 287 66 25 chr15 2960289 2960533 -82735221 - MIR SINE MIR -8 254 1 499 275 8 0 chr15 2962117 2962237 -82733517 + L1MC4a LINE L1 6607 6727 -1081 804 120 0 0 chr15 2962287 2962395 -82733359 + AluSp/q SINE Alu 174 281 -32 294 50 0 0 chr15 2962395 2962435 -82733319 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 1250 189 22 76 chr15 2962435 2962790 -82732964 + L1MD3 LINE L1 6783 7118 -877 608 242 110 11 chr15 2962799 2962981 -82732773 - MLT1G LTR MaLR -72 518 319 2713 176 54 12 chr15 2962996 2963571 -82732183 + L1MD3 LINE L1 7397 7995 0 1027 227 78 34 chr15 2963576 2963933 -82731821 + L1ME1 LINE L1 5790 6162 -4 284 143 18 0 chr15 2963934 2963990 -82731764 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 733 277 170 63 chr15 2964027 2964855 -82730899 + L1MC4 LINE L1 7124 8040 -2 4071 170 28 66 chr15 2966205 2966664 -82729090 + L1MA7 LINE L1 4548 5023 -1268 1847 137 32 3 chr15 2966664 2966948 -82728806 + AluSx SINE Alu 1 292 -20 4071 170 28 66 chr15 2966948 2967088 -82728666 + L1MA7 LINE L1 5023 5167 -1124 2269 96 7 0 chr15 2967088 2967390 -82728364 + AluSg SINE Alu 1 304 -6 4071 170 28 66 chr15 2967390 2968614 -82727140 + L1MA7 LINE L1 5167 6291 0 2477 156 36 7 chr15 2969538 2969954 -82725800 - MSTA LTR MaLR 0 428 1 4060 117 93 127 chr15 2970037 2971462 -82724292 + pTR5 LTR ERV1 743 2438 0 358 276 48 9 chr15 2971562 2971667 -82724087 + MER5A DNA MER1_type 59 167 -22 286 205 167 0 chr15 2972281 2972359 -82723395 - MLT1J2 LTR MaLR -288 162 72 3093 46 0 6 chr15 2972732 2973074 -82722680 - L1PA3 LINE L1 0 6155 5814 2307 94 3 0 chr15 2973074 2973362 -82722392 + AluSp SINE Alu 1 289 -24 3093 46 0 6 chr15 2973362 2973385 -82722369 - L1PA3 LINE L1 -341 5814 5792 2216 133 6 14 chr15 2973385 2973719 -82722035 - L1PB1 LINE L1 -6 6145 5804 1326 203 45 19 chr15 2974159 2974500 -82721254 + L1MA8 LINE L1 5685 6256 -35 * 2261 192 46 2 chr15 2974460 2974919 -82720835 + L1PA16 LINE L1 5685 6163 -3 21 0 0 0 chr15 2974971 2974992 -82720762 + AT_rich Low_complexity Low_complexity 1 21 0 192 27 81 0 chr15 2976656 2976693 -82719061 + T-rich Low_complexity Low_complexity 2 41 0 358 244 70 13 chr15 2977342 2977498 -82718256 + MER104 DNA Tc2 15 179 -1 1629 183 3 14 chr15 2978995 2979285 -82716469 + AluJb SINE Alu 1 287 -25 629 177 0 0 chr15 2979508 2979604 -82716150 + AluJb SINE Alu 192 287 -25 438 114 0 0 chr15 2979607 2979677 -82716077 + (GGA)n Simple_repeat Simple_repeat 3 72 0 212 329 0 14 chr15 2979871 2980011 -82715743 + (TG)n Simple_repeat Simple_repeat 1 138 0 560 323 57 37 chr15 2980270 2980620 -82715134 + L1M4 LINE L1 4757 5113 -1033 314 322 17 9 chr15 2980748 2980863 -82714891 + MIR SINE MIR 140 255 -7 840 272 74 25 chr15 2980904 2981349 -82714405 - HsTC2 DNA Tc2 -23 1875 1233 993 194 43 8 chr15 2984081 2984339 -82711415 - L1MD3 LINE L1 -1 7994 7728 478 277 121 32 chr15 2984345 2984798 -82710956 - MLT1E LTR MaLR 0 593 30 596 190 16 0 chr15 2984829 2984950 -82710804 - L1MD3 LINE L1 -308 7687 7565 984 161 14 14 chr15 2984993 2985204 -82710550 + L1 LINE L1 4730 4940 -1206 * 1678 243 77 30 chr15 2985199 2985851 -82709903 - L1MC3 LINE L1 -86 6080 5882 1625 216 32 13 chr15 2985920 2986383 -82709371 - L1MC3 LINE L1 -1256 4890 4419 1780 127 71 4 chr15 2986383 2986651 -82709103 + AluSc SINE Alu 22 307 -2 1544 118 33 4 chr15 2986651 2986921 -82708833 - L1MA2 LINE L1 -136 7128 6851 4924 77 29 1 chr15 2986921 2987741 -82708013 - MER11D LTR ERVK 0 897 6 1560 129 0 0 chr15 2987745 2987993 -82707761 - L1MA2 LINE L1 -409 6856 6609 1784 185 52 54 chr15 2987993 2988496 -82707258 + L1 LINE L1 4871 5372 -774 2230 165 55 32 chr15 2988503 2988698 -82707056 - Tigger1 DNA MER2_type -1935 483 294 1781 178 0 13 chr15 2988698 2989007 -82706747 - AluSx SINE Alu -7 305 1 2230 165 55 32 chr15 2989007 2989283 -82706471 - Tigger1 DNA MER2_type -2124 294 1 3310 184 31 16 chr15 2989286 2990118 -82705636 - L1MA2 LINE L1 -657 6603 5747 2255 112 3 3 chr15 2990118 2990423 -82705331 - AluSp SINE Alu -8 305 1 3310 184 31 16 chr15 2990423 2990697 -82705057 - L1MA2 LINE L1 -1513 5747 5479 573 175 73 58 chr15 2990701 2990878 -82704876 - L1MA2 LINE L1 -3717 3389 3207 2519 47 3 0 chr15 2990878 2991177 -82704577 - AluY SINE Alu -11 300 1 573 175 73 58 chr15 2991177 2991205 -82704549 - L1MA2 LINE L1 -3899 3207 3181 336 195 0 61 chr15 2991211 2991293 -82704461 - L1MA2 LINE L1 -5143 1887 1811 1328 308 16 29 chr15 2991419 2991965 -82703789 - L1MA2 LINE L1 -6439 591 53 573 28 0 0 chr15 2991965 2992036 -82703718 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 24 67 0 0 chr15 2992036 2992081 -82703673 + AT_rich Low_complexity Low_complexity 1 45 0 1049 242 16 3 chr15 2992119 2992429 -82703325 - L1M4 LINE L1 -1747 4399 4086 638 217 0 0 chr15 2992533 2992662 -82703092 - AluJb SINE Alu 0 312 184 1260 130 10 0 chr15 2992919 2993111 -82702643 - AluSq SINE Alu -119 194 1 1876 197 33 38 chr15 2993113 2994311 -82701443 - L1MB1 LINE L1 -39 6129 4788 749 219 84 113 chr15 2994364 2994779 -82700975 - L1MD3 LINE L1 -1107 6888 6486 300 89 18 0 chr15 2996119 2996175 -82699579 - L1MB8 LINE L1 0 6178 6122 959 215 45 78 chr15 2996289 2996586 -82699168 - L1MB8 LINE L1 -25 6153 5848 2244 93 3 0 chr15 2996586 2996876 -82698878 + AluSg SINE Alu 1 291 -19 959 215 45 78 chr15 2996876 2996918 -82698836 - L1MB8 LINE L1 -330 5848 5826 1449 200 6 72 chr15 2996918 2997238 -82698516 - AluJb SINE Alu -13 299 1 959 215 45 78 chr15 2997238 2997297 -82698457 - L1MB8 LINE L1 -352 5826 5767 1337 227 42 62 chr15 2997402 2998001 -82697753 - L1M4 LINE L1 -2242 3904 3318 656 265 29 23 chr15 2998271 2998622 -82697132 - L1MCa LINE L1 -5711 334 2 715 230 22 0 chr15 2998624 2998802 -82696952 - L1MD3 LINE L1 -419 7576 7395 289 262 75 37 chr15 2998807 2998914 -82696840 - MLT1F1 LTR MaLR -456 111 1 562 298 21 0 chr15 2998920 2999111 -82696643 - L1MD3 LINE L1 -727 7268 7074 1992 112 10 10 chr15 2999171 2999466 -82696288 - AluY SINE Alu -16 295 1 1160 152 28 5 chr15 2999467 2999684 -82696070 - L1MB8 LINE L1 -479 5705 5484 3257 182 95 33 chr15 2999881 3000076 -82695678 - L1MB3 LINE L1 -1 6182 6000 1835 155 7 17 chr15 3000076 3000373 -82695381 - AluJo SINE Alu -18 294 1 3257 182 95 33 chr15 3000373 3000991 -82694763 - L1MB3 LINE L1 -183 6000 5319 248 160 13 27 chr15 3001109 3001184 -82694570 + L1ME1 LINE L1 5293 5366 -2629 2142 71 0 0 chr15 3001924 3002191 -82693563 - AluY SINE Alu -43 268 2 2398 125 17 3 chr15 3002421 3002780 -82692974 - THE1B LTR MaLR 0 364 1 1294 243 133 41 chr15 3002896 3003436 -82692318 - MLT1G LTR MaLR 0 590 1 4571 158 23 33 chr15 3003530 3004977 -82690777 - L1MA8 LINE L1 -5 6286 4855 322 294 33 39 chr15 3005615 3005768 -82689986 + MLT1I LTR MaLR 250 401 -8 318 50 0 0 chr15 3005890 3005930 -82689824 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 * 972 49 0 0 chr15 3005929 3006051 -82689703 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1879 137 6 29 chr15 3006086 3006400 -82689354 - AluSg SINE Alu -3 307 1 2019 119 11 0 chr15 3006648 3006926 -82688828 + AluSx SINE Alu 1 281 -31 227 241 21 21 chr15 3007099 3007240 -82688514 + (TTGTG)n Simple_repeat Simple_repeat 1 141 0 2532 56 10 3 chr15 3007745 3008049 -82687705 + AluY SINE Alu 1 306 -5 919 278 39 30 chr15 3008074 3008480 -82687274 + L1ME1 LINE L1 5550 5959 -207 432 0 0 0 chr15 3008826 3008874 -82686880 + (CA)n Simple_repeat Simple_repeat 2 49 0 1715 133 98 11 chr15 3009035 3009320 -82686434 - AluSx SINE Alu -2 310 1 270 0 0 0 chr15 3009329 3009359 -82686395 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2477 183 17 17 chr15 3009470 3009996 -82685758 + L1PA16 LINE L1 5625 6150 -16 1103 222 19 12 chr15 3010014 3010338 -82685416 - L1MB3 LINE L1 -798 5348 5023 * 3486 129 5 7 chr15 3010311 3010907 -82684847 - L1P LINE L1 -849 5297 4703 1308 209 13 7 chr15 3010905 3011206 -82684548 - L1MB3 LINE L1 -1898 4248 3946 * 3867 172 7 12 chr15 3011259 3012008 -82683746 + L1PB4 LINE L1 5411 6155 -1 1102 265 21 9 chr15 3012010 3012148 -82683606 - L1MB8 LINE L1 -55 6123 5988 1688 169 14 3 chr15 3012148 3012310 -82683444 - AluSx SINE Alu -19 293 125 378 57 0 0 chr15 3012310 3012363 -82683391 + (TG)n Simple_repeat Simple_repeat 2 54 0 1688 169 14 3 chr15 3012363 3012490 -82683264 - AluSx SINE Alu -187 125 1 1102 265 21 9 chr15 3012490 3012728 -82683026 - L1MB8 LINE L1 -190 5988 5746 593 300 113 32 chr15 3013155 3013650 -82682104 + L1ME1 LINE L1 37 419 -5278 2429 90 0 6 chr15 3013650 3013962 -82681792 + AluSp SINE Alu 1 310 -3 593 300 113 32 chr15 3013962 3014289 -82681465 + L1ME1 LINE L1 419 718 -4979 2450 266 59 13 chr15 3014319 3015158 -82680596 + L1ME1 LINE L1 4270 5187 -1048 642 121 0 17 chr15 3015158 3015274 -82680480 - L1PA13 LINE L1 0 6163 6050 2450 266 59 13 chr15 3015274 3015800 -82679954 + L1ME1 LINE L1 5187 5687 -548 1131 256 66 5 chr15 3015807 3016218 -82679536 + L1ME1 LINE L1 5785 6220 -15 21 0 0 0 chr15 3016281 3016302 -82679452 + AT_rich Low_complexity Low_complexity 1 21 0 4920 167 119 7 chr15 3016303 3017823 -82677931 - L1MA6 LINE L1 -4 6296 4539 210 23 70 23 chr15 3017823 3017866 -82677888 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4920 167 119 7 chr15 3017866 3018098 -82677656 - L1MA6 LINE L1 -1761 4539 4334 698 117 55 6 chr15 3020179 3020342 -82675412 + GA-rich Low_complexity Low_complexity 2 172 0 970 270 62 75 chr15 3021160 3021786 -82673968 + L1ME LINE L1 78 695 -5375 22 0 0 0 chr15 3022088 3022110 -82673644 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 39 0 chr15 3022331 3022382 -82673372 + (TG)n Simple_repeat Simple_repeat 2 54 0 453 224 28 7 chr15 3022497 3022640 -82673114 - L1ME3A LINE L1 -31 6139 5994 263 298 53 57 chr15 3023407 3023635 -82672119 - L2 LINE L2 -1285 2029 1803 374 313 144 23 chr15 3025945 3026201 -82669553 - L1MC4a LINE L1 -1962 5846 5560 522 303 117 36 chr15 3026791 3027433 -82668321 - L2 LINE L2 0 3313 2579 1461 183 14 21 chr15 3028043 3028328 -82667426 + AluJo SINE Alu 20 302 -10 383 229 92 0 chr15 3029299 3029408 -82666346 + MER5A DNA MER1_type 52 170 -19 460 346 79 31 chr15 3029979 3030398 -82665356 - L2 LINE L2 -678 2636 2198 807 34 61 0 chr15 3030841 3030989 -82664765 + (TA)n Simple_repeat Simple_repeat 2 158 0 251 187 243 37 chr15 3031033 3031140 -82664614 - MLT1H LTR MaLR -9 540 412 270 347 100 20 chr15 3031512 3031763 -82663991 - L2 LINE L2 -1185 2129 1859 317 244 49 0 chr15 3032670 3032752 -82663002 - L1MC4 LINE L1 -16 8026 7941 1778 251 153 6 chr15 3032873 3033658 -82662096 - L1MC4 LINE L1 -144 7898 6999 442 211 28 20 chr15 3033655 3034283 -82661471 - L1MC3 LINE L1 0 7785 6139 * 239 273 34 0 chr15 3034283 3034371 -82661383 - MLT1F1 LTR MaLR -442 125 35 260 169 15 15 chr15 3034395 3034460 -82661294 - L1MC4a LINE L1 -930 6878 6814 2368 50 3 0 chr15 3035608 3035891 -82659863 - AluY SINE Alu -24 287 4 264 232 12 0 chr15 3036065 3036147 -82659607 + (TA)n Simple_repeat Simple_repeat 1 83 0 2044 115 3 7 chr15 3036443 3036738 -82659016 + AluSq SINE Alu 1 294 -19 216 324 81 37 chr15 3039290 3039426 -82656328 - MIR SINE MIR -110 152 11 263 281 52 72 chr15 3039481 3039787 -82655967 - L1ME LINE L1 -279 5842 5543 198 351 0 0 chr15 3040564 3040638 -82655116 + MIR SINE MIR 188 261 -1 313 188 12 12 chr15 3041316 3041396 -82654358 - L1MD3 LINE L1 -86 7909 7830 587 72 0 0 chr15 3041396 3041479 -82654275 - Alu SINE Alu -6 303 221 5255 101 95 1 chr15 3041606 3042361 -82653393 + LTR12 LTR ERV1 1 826 0 2267 85 0 13 chr15 3042397 3042702 -82653052 - AluY SINE Alu -10 301 1 1840 283 107 26 chr15 3042872 3043932 -82651822 - L1MEc LINE L1 -5138 1258 114 2199 194 33 5 chr15 3044449 3044898 -82650856 + L1PA15 LINE L1 5704 6165 0 337 196 41 0 chr15 3046995 3047092 -82648662 - L1MCa LINE L1 -3024 3402 3302 881 196 41 21 chr15 3047094 3047411 -82648343 - L1MCa LINE L1 -3963 2463 2247 779 198 211 0 chr15 3047429 3047676 -82648078 + L1MCa LINE L1 1921 2219 -4207 624 260 51 23 chr15 3047676 3047989 -82647765 - MLT1E LTR MaLR -248 345 1 398 230 25 93 chr15 3047993 3048078 -82647676 - L1MD3 LINE L1 -282 7713 7643 2171 93 0 10 chr15 3048078 3048368 -82647386 - AluY SINE Alu -11 300 14 398 230 25 93 chr15 3048368 3048443 -82647311 - L1MD3 LINE L1 -352 7643 7564 3955 220 101 75 chr15 3048636 3048857 -82646897 - L1MC2 LINE L1 -3 7770 7556 1772 141 0 4 chr15 3048857 3049126 -82646628 - AluY SINE Alu -13 298 31 3955 220 101 75 chr15 3049126 3049356 -82646398 - L1MC2 LINE L1 -217 7556 7334 3719 113 143 2 chr15 3049356 3049959 -82645795 - LTR12 LTR ERV1 0 688 1 3955 220 101 75 chr15 3049959 3050136 -82645618 - L1MC2 LINE L1 -439 7334 7163 2171 110 3 3 chr15 3050136 3050437 -82645317 + AluY SINE Alu 1 301 -10 3955 220 101 75 chr15 3050437 3051461 -82644293 - L1MC2 LINE L1 -610 7163 6097 2358 85 10 0 chr15 3051461 3051756 -82643998 + AluSx SINE Alu 1 298 -14 3955 220 101 75 chr15 3051756 3052007 -82643747 - L1MC2 LINE L1 -1676 6097 5854 3621 215 52 32 chr15 3052007 3053382 -82642372 - L1MC2 LINE L1 -720 5454 4044 782 232 29 79 chr15 3053451 3053708 -82642046 - L1MC2 LINE L1 -2302 3844 3607 185 0 40 0 chr15 3053708 3053733 -82642021 + (TTG)n Simple_repeat Simple_repeat 2 27 0 782 232 29 79 chr15 3053733 3053815 -82641939 - L1MC2 LINE L1 -2539 3607 3522 352 241 46 8 chr15 3053817 3054004 -82641750 + MLT1E LTR MaLR 346 585 -8 830 202 51 20 chr15 3054007 3054260 -82641494 + L1MD3 LINE L1 7721 7981 -14 1490 190 64 39 chr15 3056223 3056613 -82639141 - MSTB1 LTR MaLR 0 432 33 2327 87 3 22 chr15 3056614 3056925 -82638829 - AluSp SINE Alu -8 305 1 2588 214 33 48 chr15 3056926 3057015 -82638739 + MER54A LTR ERVL 188 277 -624 2147 137 0 6 chr15 3057015 3057328 -82638426 - AluSx SINE Alu -1 311 1 2588 214 33 48 chr15 3057328 3057963 -82637791 + MER54A LTR ERVL 277 901 0 2198 96 3 3 chr15 3058074 3058367 -82637387 + AluSc SINE Alu 1 293 -16 627 290 69 35 chr15 3058578 3059030 -82636724 + HsTC2 DNA Tc2 1233 1875 -23 2086 105 54 0 chr15 3059344 3059638 -82636116 + AluSx SINE Alu 1 310 -2 482 262 142 21 chr15 3059690 3059857 -82635897 - L1M4 LINE L1 -1125 5021 4817 333 0 0 0 chr15 3059857 3059894 -82635860 + (TG)n Simple_repeat Simple_repeat 2 38 0 482 262 142 21 chr15 3059894 3059959 -82635795 - L1M4 LINE L1 -1329 4817 4761 884 191 7 0 chr15 3061756 3061903 -82633851 - FRAM SINE Alu -30 146 1 2145 100 0 33 chr15 3062794 3063095 -82632659 - AluSc SINE Alu -18 291 1 464 316 82 9 chr15 3063296 3063527 -82632227 - L1MEc LINE L1 -6083 313 66 2232 91 10 0 chr15 3063698 3063995 -82631759 + AluSx SINE Alu 1 300 -12 1385 104 79 5 chr15 3064343 3064545 -82631209 - AluSc SINE Alu -12 297 81 266 252 117 27 chr15 3064568 3064679 -82631075 - HsTC2 DNA Tc2 -546 1352 1232 221 197 26 40 chr15 3065778 3065854 -82629900 + L2 LINE L2 2427 2501 -813 2073 81 34 10 chr15 3066306 3066652 -82629102 - AluSq SINE Alu 0 353 1 528 89 125 54 chr15 3066751 3066863 -82628891 - AluSc SINE Alu 0 309 190 930 101 0 0 chr15 3066863 3066982 -82628772 - AluSq SINE Alu -159 154 36 962 291 42 13 chr15 3067313 3067856 -82627898 - L1M4 LINE L1 -3204 2942 2384 487 192 96 25 chr15 3067904 3068102 -82627652 + L1MCa LINE L1 2008 2219 -4207 353 295 180 25 chr15 3068104 3068304 -82627450 - MLT1E LTR MaLR -250 343 113 6666 19 0 0 chr15 3068326 3069125 -82626629 - L1PA3 LINE L1 0 6155 5357 319 255 9 38 chr15 3069126 3069232 -82626522 - MLT1E LTR MaLR -487 106 4 668 189 26 46 chr15 3069238 3069391 -82626363 - L1MD3 LINE L1 -281 7714 7565 1785 74 0 41 chr15 3069583 3069827 -82625927 - AluY SINE Alu -6 305 72 5028 232 91 34 chr15 3069875 3071743 -82624011 - L1MC2 LINE L1 0 7772 5835 269 188 12 75 chr15 3071724 3071767 -82623987 - L1MC2 LINE L1 -788 5454 5417 * 2037 202 34 7 chr15 3071767 3072182 -82623572 - MSTB LTR MaLR 0 426 1 269 188 12 75 chr15 3072182 3072218 -82623536 - L1MC2 LINE L1 -825 5417 5380 * 1084 241 69 11 chr15 3072213 3072590 -82623164 - L1MC2 LINE L1 -1008 5138 4740 467 118 0 0 chr15 3072590 3072658 -82623096 - AluJ/FLAM SINE Alu -217 95 28 542 179 9 127 chr15 3072662 3072891 -82622863 - L1MC2 LINE L1 -1446 4700 4499 888 177 0 0 chr15 3072920 3073061 -82622693 - FRAM SINE Alu -35 141 1 22 0 0 0 chr15 3073069 3073091 -82622663 + AT_rich Low_complexity Low_complexity 1 22 0 3980 137 46 29 chr15 3073148 3073909 -82621845 - LTR1 LTR ERV1 -11 774 1 736 235 20 44 chr15 3073912 3074163 -82621591 - L1MC2 LINE L1 -2383 3763 3519 392 220 53 53 chr15 3074213 3074363 -82621391 + MLT1E LTR MaLR 475 593 0 969 221 27 8 chr15 3074365 3074627 -82621127 + L1MD3 LINE L1 7724 7990 -5 2224 103 20 0 chr15 3075266 3075566 -82620188 + AluSg SINE Alu 1 306 -4 1635 129 20 106 chr15 3077335 3077470 -82618284 + AluYb8 SINE Alu 1 146 -172 2017 105 51 10 chr15 3077470 3077764 -82617990 + AluSc SINE Alu 1 306 -3 1635 129 20 106 chr15 3077764 3077969 -82617785 + AluYb8 SINE Alu 146 312 -6 4329 198 38 8 chr15 3077984 3078859 -82616895 + MER54A LTR ERVL 1 901 0 273 321 36 0 chr15 3079075 3079187 -82616567 + HsTC2 DNA Tc2 35 150 -1748 * 611 293 75 35 chr15 3079186 3079637 -82616117 + HsTC2 DNA Tc2 1231 1875 -23 317 358 137 4 chr15 3079674 3079900 -82615854 - MIR SINE MIR 0 262 7 277 262 158 32 chr15 3080011 3080232 -82615522 - L1M4 LINE L1 -1125 5021 4773 29 0 0 0 chr15 3082239 3082268 -82613486 + AT_rich Low_complexity Low_complexity 1 29 0 393 315 108 22 chr15 3083039 3083271 -82612483 - L1MEc LINE L1 -6083 313 62 282 305 99 21 chr15 3084219 3084360 -82611394 - MIR SINE MIR -1 261 110 2067 158 3 0 chr15 3084388 3084691 -82611063 - AluSx SINE Alu -8 304 1 223 200 143 76 chr15 3084698 3084803 -82610951 + MER5B DNA MER1_type 5 116 -62 1641 79 0 10 chr15 3084976 3085178 -82610576 - AluSq SINE Alu -113 200 1 200 287 196 28 chr15 3085734 3085877 -82609877 - MIR3 SINE MIR -35 173 7 348 133 33 0 chr15 3086068 3086128 -82609626 + MLT1C LTR MaLR 1 62 -405 2290 163 59 2 chr15 3086555 3086960 -82608794 + MSTA LTR MaLR 1 428 0 433 248 32 6 chr15 3087079 3087236 -82608518 + L2 LINE L2 2429 2589 -725 2094 93 4 0 chr15 3087339 3087617 -82608137 - AluSx SINE Alu -33 279 1 1137 239 64 18 chr15 3088378 3088888 -82606866 + L1MC4 LINE L1 4915 5454 -720 2197 104 10 0 chr15 3088890 3089179 -82606575 - AluSp SINE Alu -21 292 1 442 173 0 39 chr15 3089183 3089287 -82606467 + L1MC4 LINE L1 5854 5953 -2089 1991 213 82 16 chr15 3089409 3089876 -82605878 - L1MC3 LINE L1 -74 7711 7199 2800 7 0 0 chr15 3089876 3090178 -82605576 + AluYa5 SINE Alu 1 302 -9 1991 213 82 16 chr15 3090178 3090273 -82605481 - L1MC3 LINE L1 -586 7199 7112 530 182 0 9 chr15 3090286 3090396 -82605358 - L1PB3 LINE L1 -14 6140 6032 1565 156 154 96 chr15 3090396 3090940 -82604814 + LTR12 LTR ERV1 1 576 -138 348 215 25 0 chr15 3090940 3091019 -82604735 - L1PB3 LINE L1 -114 6040 5960 754 127 32 0 chr15 3091171 3091297 -82604457 - L1PB3 LINE L1 -207 5947 5818 1272 300 24 20 chr15 3091530 3092277 -82603477 - L1M4 LINE L1 -3022 3124 2375 305 200 56 11 chr15 3092290 3092380 -82603374 + L1MCa LINE L1 2101 2194 -4232 26 82 0 0 chr15 3092380 3092441 -82603313 + AT_rich Low_complexity Low_complexity 1 61 0 4148 127 40 19 chr15 3092442 3092499 -82603255 - L1PA14 LINE L1 -24 6137 6083 2064 153 80 30 chr15 3092499 3092938 -82602816 - LOR1b LTR ERV1 0 461 1 4148 127 40 19 chr15 3092938 3093631 -82602123 - L1PA14 LINE L1 -78 6083 5371 664 71 36 0 chr15 3093622 3093734 -82602020 - L1P4 LINE L1 -672 5489 5374 * 3742 144 16 21 chr15 3093729 3094587 -82601167 - L1P4 LINE L1 -673 5488 4638 2191 92 7 10 chr15 3094587 3094880 -82600874 + AluY SINE Alu 1 292 -19 3742 144 16 21 chr15 3094880 3094962 -82600792 - L1P4 LINE L1 -1523 4638 4557 379 287 0 29 chr15 3095168 3095304 -82600450 - MLT1E LTR MaLR -461 132 1 398 193 35 35 chr15 3095311 3095425 -82600329 - L1MD3 LINE L1 -285 7710 7597 1864 89 8 4 chr15 3095693 3095974 -82599780 + AluY SINE Alu 35 316 0 2064 133 3 0 chr15 3096074 3096359 -82599395 + AluSx SINE Alu 5 290 -22 580 229 3 129 chr15 3096359 3096577 -82599177 - L1MCa LINE L1 -3390 3036 2867 2280 104 0 3 chr15 3096577 3096875 -82598879 - AluSg SINE Alu -13 297 1 580 229 3 129 chr15 3096875 3096966 -82598788 - L1MCa LINE L1 -3559 2867 2766 2365 95 0 0 chr15 3096977 3097273 -82598481 - AluSx SINE Alu -16 296 1 261 261 95 46 chr15 3097466 3097707 -82598047 - L1 LINE L1 -1127 5019 4767 218 281 0 0 chr15 3097722 3097779 -82597975 - MIR SINE MIR -205 57 1 1690 200 0 7 chr15 3097844 3098144 -82597610 - AluJb SINE Alu -14 298 1 2183 118 3 3 chr15 3098394 3098698 -82597056 + AluSc SINE Alu 1 304 -5 957 228 38 29 chr15 3098798 3098919 -82596835 - L1MCa LINE L1 -3907 2700 2582 531 140 75 9 chr15 3098919 3099026 -82596728 - L1MA3 LINE L1 0 6305 6192 957 228 38 29 chr15 3099026 3099344 -82596410 - L1MCa LINE L1 -4025 2582 2223 1181 183 3 45 chr15 3099350 3099661 -82596093 + L1MCa LINE L1 1921 2218 -4208 2415 86 0 0 chr15 3100022 3100325 -82595429 + AluY SINE Alu 1 303 -8 259 206 55 14 chr15 3100326 3100399 -82595355 - L1MD3 LINE L1 -355 7640 7565 3967 239 61 72 chr15 3100644 3102542 -82593212 - L1MC3 LINE L1 -14 8051 6173 2365 112 3 0 chr15 3102542 3102854 -82592900 - AluSp SINE Alu 0 313 1 3967 239 61 72 chr15 3102854 3102894 -82592860 - L1MC3 LINE L1 -1892 6173 6134 1527 194 3 48 chr15 3102904 3103218 -82592536 + AluJo SINE Alu 1 300 -12 1792 237 65 20 chr15 3103230 3103351 -82592403 - L1MC3 LINE L1 -732 5722 5608 2292 90 3 0 chr15 3103351 3103639 -82592115 - AluSg SINE Alu -17 293 5 1792 237 65 20 chr15 3103639 3104298 -82591456 - L1MC3 LINE L1 -846 5608 4896 1979 260 35 41 chr15 3104311 3105172 -82590582 - L1MC3 LINE L1 -1772 4654 3799 348 246 18 2 chr15 3105173 3105353 -82590401 + MLT1F1 LTR MaLR 349 567 0 838 213 31 39 chr15 3105361 3105568 -82590186 + L1MD3 LINE L1 7731 7937 -58 2140 127 0 25 chr15 3105568 3105884 -82589870 - AluSx SINE Alu -4 308 1 838 213 31 39 chr15 3105884 3105930 -82589824 + L1MD3 LINE L1 7937 7982 -13 230 21 62 21 chr15 3105959 3106007 -82589747 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2382 97 0 7 chr15 3106416 3106726 -82589028 - AluSq SINE Alu -5 308 1 1890 164 3 6 chr15 3107049 3107360 -82588394 + AluJo SINE Alu 1 310 -2 2269 154 28 42 chr15 3108634 3109015 -82586739 + MSTA LTR MaLR 1 377 -51 2376 86 7 0 chr15 3109015 3109317 -82586437 - AluSg SINE Alu -6 304 1 2269 154 28 42 chr15 3109317 3109369 -82586385 + MSTA LTR MaLR 377 428 0 2150 122 3 0 chr15 3109627 3109931 -82585823 - AluSx SINE Alu -7 305 1 3805 221 18 18 chr15 3109933 3110819 -82584935 + MER54A LTR ERVL 16 901 0 576 186 16 32 chr15 3113752 3113940 -82581814 - L1MA7 LINE L1 -6 6285 6101 1773 243 46 35 chr15 3114155 3115323 -82580431 - L1MC3 LINE L1 -2994 3432 2255 2135 166 32 12 chr15 3115363 3115774 -82579980 + MSTB1 LTR MaLR 1 419 -13 2459 76 0 0 chr15 3115823 3116126 -82579628 + AluY SINE Alu 1 303 -8 794 215 89 7 chr15 3116126 3116391 -82579363 + L1MCa LINE L1 1935 2221 -4205 433 323 165 25 chr15 3116408 3116693 -82579061 - MLT1E LTR MaLR -268 325 1 601 210 14 0 chr15 3116696 3116839 -82578915 - L1MD3 LINE L1 -281 7714 7570 964 196 11 6 chr15 3117119 3117298 -82578456 + AluJb SINE Alu 130 309 -3 4818 229 86 41 chr15 3117311 3118021 -82577733 - L1MC3 LINE L1 -25 8040 7364 1991 119 14 11 chr15 3118021 3118330 -82577424 - AluSc SINE Alu 0 312 3 4818 229 86 41 chr15 3118330 3119264 -82576490 - L1MC3 LINE L1 -701 7364 6301 2575 58 0 10 chr15 3119264 3119577 -82576177 + AluY SINE Alu 1 310 -1 4818 229 86 41 chr15 3119577 3119754 -82576000 - L1MC3 LINE L1 -1764 6301 6134 1835 254 59 33 chr15 3119755 3120425 -82575329 - L1MC3 LINE L1 -721 5733 5028 1558 194 3 40 chr15 3120425 3120618 -82575136 - AluJo SINE Alu 0 312 134 2219 113 3 0 chr15 3120618 3120918 -82574836 - AluSx SINE Alu -11 301 1 1558 194 3 40 chr15 3120918 3121048 -82574706 - AluJo SINE Alu -178 134 1 1835 254 59 33 chr15 3121048 3121363 -82574391 - L1MC3 LINE L1 -1426 5028 4723 852 299 131 18 chr15 3121367 3122033 -82573721 - L1MC3 LINE L1 -1799 4627 3887 443 187 47 19 chr15 3122117 3122305 -82573449 + MLT1E LTR MaLR 355 593 0 758 220 47 8 chr15 3122313 3122549 -82573205 + L1MD3 LINE L1 7731 7975 -20 2408 85 0 0 chr15 3122923 3123217 -82572537 + AluY SINE Alu 1 294 -17 941 163 69 82 chr15 3123590 3124053 -82571701 + THE1C LTR MaLR 1 375 0 1788 131 64 0 chr15 3124736 3125003 -82570751 + AluSx SINE Alu 1 307 0 208 0 0 0 chr15 3125003 3125026 -82570728 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 1194 175 9 22 chr15 3125919 3126148 -82569606 - L1PA15 LINE L1 0 6165 5940 2429 62 10 10 chr15 3126237 3126545 -82569209 - AluY SINE Alu -3 308 1 505 236 124 42 chr15 3126779 3127038 -82568716 + HsTC2 DNA Tc2 1233 1688 -210 1379 214 45 3 chr15 3127604 3127894 -82567860 - AluJb SINE Alu -10 302 1 2261 78 23 13 chr15 3127971 3128279 -82567475 + AluY SINE Alu 1 311 0 403 329 92 12 chr15 3128605 3128845 -82566909 - L1MEc LINE L1 -6046 350 92 2354 90 10 0 chr15 3129063 3129364 -82566390 + AluSp SINE Alu 1 304 -9 656 217 73 62 chr15 3130412 3130719 -82565035 - L1MC3 LINE L1 -3942 2665 2294 2256 88 0 3 chr15 3130719 3131038 -82564716 - AluSg SINE Alu 0 318 1 656 217 73 62 chr15 3131038 3131133 -82564621 - L1MC3 LINE L1 -4313 2294 2201 * 1418 162 0 29 chr15 3131129 3131437 -82564317 + L1MCa LINE L1 1921 2219 -4207 677 253 115 48 chr15 3131437 3131749 -82564005 - MLT1E LTR MaLR -248 345 13 325 311 121 0 chr15 3131763 3131895 -82563859 - L1MD3 LINE L1 -282 7713 7566 3895 294 106 38 chr15 3132149 3133886 -82561868 - L1MC3 LINE L1 -11 7774 5837 2273 84 3 53 chr15 3133886 3134209 -82561545 - AluSq SINE Alu -6 307 1 3895 294 106 38 chr15 3134209 3134805 -82560949 - L1MC3 LINE L1 -1948 5837 5283 198 0 0 0 chr15 3135091 3135113 -82560641 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 555 157 0 0 chr15 3135118 3135201 -82560553 - AluSc SINE Alu -21 288 206 303 75 0 0 chr15 3135201 3135241 -82560513 - Alu SINE Alu -268 40 1 411 113 0 0 chr15 3135250 3135312 -82560442 + (TG)n Simple_repeat Simple_repeat 1 62 0 2136 75 0 4 chr15 3135312 3135593 -82560161 - AluY SINE Alu -31 280 1 2363 74 0 0 chr15 3135863 3136161 -82559593 - AluY SINE Alu -13 298 1 390 234 73 92 chr15 3136348 3136566 -82559188 - L1MCa LINE L1 -3759 2667 2454 302 78 0 59 chr15 3136570 3136621 -82559133 - MER75 DNA T2_type -4 500 453 651 202 52 19 chr15 3136643 3136856 -82558898 - L1MCa LINE L1 -3969 2457 2238 781 211 40 46 chr15 3136862 3137166 -82558588 + L1MCa LINE L1 1918 2219 -4207 337 136 11 80 chr15 3137166 3137254 -82558500 - MLT1F1 LTR MaLR -233 334 253 309 284 55 37 chr15 3137342 3137451 -82558303 - MLT1F1 LTR MaLR -482 111 1 497 230 6 67 chr15 3137455 3137620 -82558134 - L1MD3 LINE L1 -282 7713 7559 3094 260 96 47 chr15 3137832 3139477 -82556277 - L1MC3 LINE L1 -6 7779 6033 1600 209 3 0 chr15 3139477 3139773 -82555981 - AluSx SINE Alu -15 297 1 3094 260 96 47 chr15 3139773 3139963 -82555791 - L1MC3 LINE L1 -1752 6033 5854 994 257 62 30 chr15 3139963 3140153 -82555601 - L1MC3 LINE L1 -720 5454 5272 2208 110 0 10 chr15 3140153 3140461 -82555293 + AluSc SINE Alu 4 308 -1 994 257 62 30 chr15 3140461 3140916 -82554838 - L1MC3 LINE L1 -902 5272 4781 * 1379 237 36 14 chr15 3140913 3141419 -82554335 - L1MC3 LINE L1 -2111 4035 3519 260 281 24 0 chr15 3141421 3141503 -82554251 + MLT1E LTR MaLR 350 433 -160 900 190 79 8 chr15 3141607 3141860 -82553894 + L1MD3 LINE L1 7724 7994 -1 2318 81 3 10 chr15 3142199 3142497 -82553257 + AluSc SINE Alu 1 296 -13 1013 270 61 10 chr15 3142711 3143107 -82552647 - L1MC3 LINE L1 -1504 6281 5866 808 228 58 83 chr15 3143177 3143616 -82552138 - MER66A LTR ERV1 -3 475 97 2008 262 66 32 chr15 3143716 3144347 -82551407 - L1MC3 LINE L1 -748 5398 4707 2004 119 13 50 chr15 3144347 3144665 -82551089 - AluSx SINE Alu -6 306 1 2008 262 66 32 chr15 3144665 3145209 -82550545 - L1MC3 LINE L1 -1439 4707 4183 2439 79 0 13 chr15 3145234 3145549 -82550205 - AluY SINE Alu 0 311 1 656 251 55 34 chr15 3145557 3145940 -82549814 - L1MC3 LINE L1 -2190 3956 3566 371 241 131 8 chr15 3145982 3146168 -82549586 + MLT1E LTR MaLR 418 593 0 467 258 38 22 chr15 3146170 3146437 -82549317 + L1MD3 LINE L1 7724 7994 -1 2196 108 0 10 chr15 3147344 3147639 -82548115 - AluY SINE Alu -15 296 5 1398 207 0 39 chr15 3147655 3147960 -82547794 - AluJo SINE Alu -19 293 1 606 265 35 5 chr15 3147962 3148162 -82547592 - L1MC3 LINE L1 -506 7279 7074 1449 291 39 39 chr15 3148176 3148449 -82547305 - L1M4 LINE L1 -1458 4688 4416 1750 118 0 8 chr15 3148449 3148694 -82547060 - AluSg SINE Alu -19 291 49 1449 291 39 39 chr15 3148694 3148789 -82546965 - L1M4 LINE L1 -1730 4416 4322 1684 157 78 28 chr15 3148789 3149146 -82546608 - THE1C LTR MaLR 0 375 1 1449 291 39 39 chr15 3149146 3149945 -82545809 - L1M4 LINE L1 -1823 4323 3520 373 249 296 6 chr15 3149953 3150122 -82545632 + MLT1E LTR MaLR 376 593 0 755 212 45 12 chr15 3150130 3150375 -82545379 + L1MD3 LINE L1 7731 7983 -12 1779 84 88 29 chr15 3150516 3150789 -82544965 - AluSg SINE Alu -21 289 1 687 239 7 0 chr15 3151022 3151211 -82544543 + FAM SINE Alu 1 56 0 1503 255 39 37 chr15 3151418 3151928 -82543826 + MER54A LTR ERVL 19 529 -372 185 160 0 20 chr15 3151974 3152024 -82543730 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1100 266 34 87 chr15 3152054 3152122 -82543632 - MLT2B3 LTR ERVL -54 500 430 2206 92 4 0 chr15 3152122 3152425 -82543329 - AluY SINE Alu 0 304 1 1100 266 34 87 chr15 3152425 3152882 -82542872 - MLT2B3 LTR ERVL -124 430 2 2475 201 54 2 chr15 3152885 3153463 -82542291 - ERVL-B3 LTR ERVL -20 5744 5137 1508 230 34 37 chr15 3153465 3153874 -82541880 - MSTC LTR MaLR 0 428 21 403 231 66 8 chr15 3153878 3153999 -82541755 - MSTC-int LTR MaLR -1 1734 1607 2419 230 8 69 chr15 3154061 3154788 -82540966 - LTR8 LTR ERV1 -8 683 1 962 258 39 13 chr15 3154791 3155097 -82540657 - HUERS-P1 LTR ERV1 -4 6259 5946 861 252 71 17 chr15 3155202 3155496 -82540258 - PRIMA41-int LTR ERV1 -105 6226 5917 5642 159 51 117 chr15 3155533 3156541 -82539213 - PRIMA41-int LTR ERV1 -299 5422 4350 1950 115 7 17 chr15 3156541 3156828 -82538926 - AluSc SINE Alu -25 284 1 5642 159 51 117 chr15 3156828 3157107 -82538647 - PRIMA41-int LTR ERV1 -1371 4350 4054 1488 180 29 67 chr15 3157107 3157282 -82538472 - AluJb SINE Alu -5 307 148 2213 112 0 3 chr15 3157282 3157576 -82538178 - AluSp SINE Alu -14 299 7 1488 180 29 67 chr15 3157576 3157716 -82538038 - AluJb SINE Alu -164 148 4 5642 159 51 117 chr15 3157716 3158351 -82537403 - PRIMA41-int LTR ERV1 -1667 4054 3729 765 195 124 28 chr15 3158365 3158647 -82537107 - LTR15 LTR ERV1 -18 475 167 3289 197 64 33 chr15 3158835 3159086 -82536668 - PRIMA41-int LTR ERV1 -1588 3292 3050 2389 86 23 0 chr15 3159086 3159388 -82536366 + AluY SINE Alu 1 309 -2 3289 197 64 33 chr15 3159388 3160148 -82535606 - PRIMA41-int LTR ERV1 -1830 3050 1210 1499 237 91 45 chr15 3160173 3160691 -82535063 - PRIMA41-int LTR ERV1 -5442 2095 366 1434 215 75 70 chr15 3160692 3161249 -82534505 - PRIMA41-int LTR ERV1 -5242 1021 462 575 288 0 12 chr15 3161403 3161566 -82534188 - PRIMA41-int LTR ERV1 -6062 201 41 1892 234 11 104 chr15 3161591 3162353 -82533401 - LTR8 LTR ERV1 0 691 1 2102 275 78 64 chr15 3162355 3163327 -82532427 - MSTC-int LTR MaLR -210 1441 449 372 22 0 0 chr15 3163327 3163372 -82532382 + (TG)n Simple_repeat Simple_repeat 2 46 0 2102 275 78 64 chr15 3163372 3163549 -82532205 - MSTC-int LTR MaLR -1202 449 276 7567 21 15 0 chr15 3163553 3164565 -82531189 - L1PA3 LINE L1 0 6155 5136 2620 19 0 0 chr15 3164565 3164887 -82530867 + L1PA3 LINE L1 4817 5138 -1008 709 250 123 35 chr15 3164880 3164936 -82530818 - MSTC-int LTR MaLR -1390 345 295 * 3748 122 80 5 chr15 3164936 3165535 -82530219 - LTR9B LTR ERV1 0 644 1 709 250 123 35 chr15 3165535 3165794 -82529960 - MSTC-int LTR MaLR -1440 295 2 763 193 9 71 chr15 3165796 3166006 -82529748 - MSTC LTR MaLR 0 428 232 1457 182 60 54 chr15 3166006 3166357 -82529397 - LTR10B LTR ERV1 0 547 195 892 179 49 27 chr15 3166481 3166704 -82529050 - MSTC LTR MaLR -193 235 8 775 164 42 12 chr15 3166709 3166874 -82528880 - ERVL-B3 LTR ERVL -624 5140 4971 * 6373 231 22 20 chr15 3166870 3168434 -82527320 - ERVL-B3 LTR ERVL -946 4818 3252 275 353 0 0 chr15 3169330 3169466 -82526288 - PRIMA41-int LTR ERV1 -499 4455 4320 467 339 14 42 chr15 3171228 3171450 -82524304 - PRIMA41-int LTR ERV1 -1990 5766 5539 1963 131 14 0 chr15 3171450 3171740 -82524014 - AluSg SINE Alu -16 294 1 2356 98 0 19 chr15 3171745 3172052 -82523702 - AluSg SINE Alu -9 301 1 467 339 14 42 chr15 3172052 3172254 -82523500 - PRIMA41-int LTR ERV1 -2221 5535 5348 9039 228 49 6 chr15 3172790 3175502 -82520252 - ERVL-B3 LTR ERVL -2905 2859 20 1924 239 35 44 chr15 3175534 3175943 -82519811 - MLT2B3 LTR ERVL -12 542 138 4086 163 23 40 chr15 3175943 3176213 -82519541 - LTR39 LTR ERV1 0 783 510 2233 121 0 0 chr15 3176213 3176519 -82519235 - AluSg SINE Alu -4 306 1 4086 163 23 40 chr15 3176519 3177045 -82518709 - LTR39 LTR ERV1 -273 510 1 1924 239 35 44 chr15 3177045 3177182 -82518572 - MLT2B3 LTR ERVL -416 138 1 1256 264 39 6 chr15 3177182 3177546 -82518208 + MER54A LTR ERVL 522 897 -4 278 343 86 0 chr15 3177736 3177876 -82517878 + HsTC2 DNA Tc2 2 153 -1745 296 264 187 25 chr15 3177965 3178094 -82517660 + HsTC2 DNA Tc2 1508 1615 -283 2051 123 33 41 chr15 3178094 3178459 -82517295 - THE1B LTR MaLR -2 362 1 296 264 187 25 chr15 3178459 3178644 -82517110 + HsTC2 DNA Tc2 1615 1873 -25 801 204 96 119 chr15 3178715 3179186 -82516568 - MER4C LTR ERV1 0 465 6 6241 169 50 43 chr15 3179187 3181028 -82514726 - MER4C-int LTR ERV1 -8 6590 4290 6999 30 1 1 chr15 3181032 3181905 -82513849 - L1PA4 LINE L1 -5 6150 5278 5660 40 0 0 chr15 3181905 3182625 -82513129 + L1P LINE L1 4309 5028 -1118 1091 145 52 76 chr15 3182625 3182914 -82512840 - MER83A-int LTR ERV1 -3404 4716 4435 647 168 0 0 chr15 3182917 3183018 -82512736 + AluJ/FLAM SINE Alu 1 101 -211 2273 141 71 2 chr15 3183019 3183415 -82512339 - MER83A-int LTR ERV1 -1415 5676 5254 2192 59 33 52 chr15 3184922 3185229 -82510525 - AluY SINE Alu -10 301 1 186 226 81 16 chr15 3185970 3186032 -82509722 + MER5B DNA MER1_type 113 178 0 2089 138 6 13 chr15 3187430 3187742 -82508012 + AluSx SINE Alu 1 310 -2 2361 28 0 0 chr15 3189146 3189430 -82506324 - L1PA3 LINE L1 -413 5742 5459 3472 31 12 0 chr15 3189430 3189842 -82505912 + L1PA3 LINE L1 5738 6155 0 1216 234 12 8 chr15 3189850 3190098 -82505656 - AluJo SINE Alu -30 282 34 546 206 5 98 chr15 3190390 3190574 -82505180 - MER83A-int LTR ERV1 -4168 3952 3786 271 269 46 46 chr15 3190708 3190838 -82504916 - MER83A-int LTR ERV1 -3494 4626 4497 434 195 131 56 chr15 3190845 3191112 -82504642 - MER83A-int LTR ERV1 -2581 4017 3731 1433 154 24 14 chr15 3191201 3192361 -82503393 + L1P LINE L1 2843 4164 -1982 671 244 22 39 chr15 3192434 3192479 -82503275 - MLT2B3 LTR ERVL 0 554 510 258 116 0 0 chr15 3192479 3192522 -82503232 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 671 244 22 39 chr15 3192522 3192706 -82503048 - MLT2B3 LTR ERVL -44 510 329 436 326 51 37 chr15 3192795 3193169 -82502585 - L1MC3 LINE L1 -945 6840 6462 555 173 9 0 chr15 3193207 3193317 -82502437 - Tigger4(Zombi) DNA MER2_type 0 2731 2621 1078 192 78 117 chr15 3193318 3193730 -82502024 - MER83 LTR ERV1 -7 441 46 354 90 45 30 chr15 3193727 3193794 -82501960 - MER83 LTR ERV1 -344 104 37 * 2047 162 17 0 chr15 3193799 3194144 -82501610 - MER83-int LTR ERV1 -44 4241 3891 1951 133 57 17 chr15 3194135 3194489 -82501265 - MER83-int LTR ERV1 -1244 3041 2674 * 399 167 0 13 chr15 3194501 3194579 -82501175 - MER83-int LTR ERV1 -258 6073 5997 5000 187 72 37 chr15 3194749 3196073 -82499681 - MER83A-int LTR ERV1 -547 5399 4059 3134 155 97 6 chr15 3196064 3196703 -82499051 - MER83A-int LTR ERV1 -1818 3062 2366 * 589 136 17 102 chr15 3196805 3196850 -82498904 - MER83A-int LTR ERV1 -2492 2388 2341 2174 107 0 7 chr15 3196850 3197149 -82498605 - AluY SINE Alu -14 297 1 589 136 17 102 chr15 3197149 3197280 -82498474 - MER83A-int LTR ERV1 -2539 2341 2227 * 2399 168 58 32 chr15 3197278 3198184 -82497570 - MER83A-int LTR ERV1 -193 1932 1075 3418 181 63 35 chr15 3198202 3199246 -82496508 - MER83A-int LTR ERV1 -3725 1155 9 1143 164 82 108 chr15 3199257 3199635 -82496119 - MER83 LTR ERV1 -27 421 54 451 163 10 10 chr15 3199641 3199739 -82496015 - MER83 LTR ERV1 -344 104 7 34 0 0 0 chr15 3199769 3199803 -82495951 + AT_rich Low_complexity Low_complexity 1 34 0 707 153 44 0 chr15 3199841 3199978 -82495776 - Tigger4(Zombi) DNA MER2_type -134 2597 2455 2203 102 7 0 chr15 3199993 3200297 -82495457 - AluSq SINE Alu -7 306 1 2821 190 134 8 chr15 3200297 3201050 -82494704 + Tigger3(Golem) DNA MER2_type 2181 3028 -1 1753 131 67 25 chr15 3201060 3201420 -82494334 - MER51B LTR ERV1 -2 375 1 606 207 25 0 chr15 3201421 3201542 -82494212 - MER51B-int LTR ERV1 0 7816 7693 363 229 11 78 chr15 3201765 3201944 -82493810 - MER51A-int LTR ERV1 -6987 829 663 281 208 0 13 chr15 3202029 3202106 -82493648 - MER51A-int LTR ERV1 -3067 2519 2444 * 1499 194 50 124 chr15 3202105 3202702 -82493052 - MER51A-int LTR ERV1 -7263 553 1 1437 143 56 44 chr15 3202702 3203023 -82492731 - MER51A LTR ERV1 0 634 310 231 185 231 0 chr15 3203038 3203103 -82492651 - MER51A LTR ERV1 -554 80 1 796 174 64 0 chr15 3203108 3203280 -82492474 - Tigger4(Zombi) DNA MER2_type -485 2246 2064 1016 273 55 42 chr15 3203315 3203562 -82492192 - L1MC3 LINE L1 -1377 6408 6166 2290 85 0 0 chr15 3203562 3203890 -82491864 - AluY SINE Alu 0 328 1 1016 273 55 42 chr15 3203890 3204183 -82491571 - L1MC3 LINE L1 -1619 6166 5860 543 214 51 56 chr15 3204197 3204634 -82491120 - L1M4 LINE L1 -734 5444 5003 3945 137 56 19 chr15 3204669 3205841 -82489913 + L1PA11 LINE L1 4824 6045 -129 5721 183 20 4 chr15 3205843 3206979 -82488775 + PRIMA41-int LTR ERV1 2740 3893 -3863 2150 112 7 3 chr15 3207070 3207365 -82488389 + AluY SINE Alu 1 296 -15 278 313 98 0 chr15 3208254 3208366 -82487388 - MER83A-int LTR ERV1 -971 815 693 1114 296 35 23 chr15 3208662 3209057 -82486697 - MER83A-int LTR ERV1 -1343 443 44 773 259 58 88 chr15 3209063 3209515 -82486239 - LTR38B LTR ERV1 -55 555 118 677 110 0 0 chr15 3209568 3209668 -82486086 + L1PA11 LINE L1 6008 6107 -67 312 213 33 17 chr15 3209755 3209926 -82485828 - MLT1E LTR MaLR -15 578 346 349 296 43 0 chr15 3261733 3261848 -82433906 + HsTC2 DNA Tc2 35 154 -1744 * 689 274 31 57 chr15 3261845 3262326 -82433428 + HsTC2 DNA Tc2 1233 1873 -25 355 333 49 27 chr15 3262596 3262821 -82432933 - L1M4 LINE L1 -1034 5112 4883 1283 241 0 10 chr15 3262954 3263257 -82432497 - AluJo SINE Alu -12 300 1 564 222 11 103 chr15 3264333 3264518 -82431236 - MER83A-int LTR ERV1 -4167 3953 3786 1037 220 20 27 chr15 3264606 3265040 -82430714 - MER83A-int LTR ERV1 -2148 4183 3731 5084 179 76 78 chr15 3265078 3266972 -82428782 - MER83A-int LTR ERV1 -2869 3729 682 1496 204 28 29 chr15 3266961 3267524 -82428230 - MER83A-int LTR ERV1 -2351 1934 1317 * 2427 177 60 11 chr15 3268594 3269452 -82426302 - L1P5 LINE L1 -479 5675 4767 903 302 73 72 chr15 3269463 3270650 -82425104 - L1PA15-16 LINE L1 -5685 1165 1 2459 248 98 55 chr15 3270668 3271179 -82424575 - L1MC3 LINE L1 -659 7195 6708 240 59 0 0 chr15 3271179 3271213 -82424541 + (CA)n Simple_repeat Simple_repeat 1 34 0 2459 248 98 55 chr15 3271213 3271921 -82423833 - L1MC3 LINE L1 -1146 6708 5923 1331 253 40 22 chr15 3271921 3272591 -82423163 - L1MC3 LINE L1 -720 5523 4846 1225 264 35 31 chr15 3272606 3273118 -82422636 - L1MC3 LINE L1 -2105 4110 3597 281 288 18 54 chr15 3273122 3273233 -82422521 + MLT1E LTR MaLR 341 447 -146 415 259 164 9 chr15 3273315 3273535 -82422219 + L1MD3 LINE L1 7733 7986 -9 400 277 130 30 chr15 3274856 3275087 -82420667 - L1MC3 LINE L1 -6051 345 92 386 284 22 0 chr15 3275206 3275340 -82420414 - L1MD3 LINE L1 -288 7707 7571 1079 163 0 0 chr15 3275442 3275602 -82420152 + AluSx SINE Alu 1 160 -152 1080 275 65 2 chr15 3275607 3276072 -82419682 - L1M4 LINE L1 -872 5274 4781 * 1093 254 86 11 chr15 3276070 3276547 -82419207 - L1M4 LINE L1 -2115 4031 3519 343 238 12 0 chr15 3276548 3276628 -82419126 + MLT1E LTR MaLR 349 429 -164 1051 183 53 0 chr15 3276729 3276975 -82418779 + L1MD3 LINE L1 7724 7982 -13 2206 146 25 3 chr15 3277592 3277948 -82417806 - THE1B LTR MaLR 0 364 1 1646 209 6 3 chr15 3279781 3280116 -82415638 + MER54A LTR ERVL 24 359 -542 674 203 14 0 chr15 3280175 3280318 -82415436 - L1MD3 LINE L1 -282 7713 7569 813 221 42 8 chr15 3280548 3280810 -82414944 - L1MC3 LINE L1 -4 7781 7511 411 319 59 28 chr15 3281168 3281422 -82414332 - LTR38B-int LTR ERV1 -1412 374 113 479 262 87 42 chr15 3281486 3282004 -82413750 - LTR38B LTR ERV1 0 611 64 394 299 109 0 chr15 3282689 3282873 -82412881 - L1MEc LINE L1 -6078 318 115 601 180 44 16 chr15 3283366 3283549 -82412205 - L1MCa LINE L1 -3996 2430 2243 295 132 0 0 chr15 3283565 3283633 -82412121 + L1MCa LINE L1 1921 1988 -4438 447 224 39 75 chr15 3283654 3283674 -82412080 + L1MCa LINE L1 1974 1993 -4433 1975 130 3 23 chr15 3283674 3283974 -82411780 + AluSx SINE Alu 2 295 -17 447 224 39 75 chr15 3283974 3284208 -82411546 + L1MCa LINE L1 1993 2219 -4207 282 291 97 24 chr15 3284270 3284435 -82411319 - MLT1E LTR MaLR -333 260 84 239 229 220 18 chr15 3284519 3284628 -82411126 - L1MC4 LINE L1 -421 7621 7491 21 0 0 0 chr15 3284759 3284780 -82410974 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr15 3284873 3284912 -82410842 + AT_rich Low_complexity Low_complexity 1 39 0 968 205 111 3 chr15 3284913 3285201 -82410553 - L1MC3 LINE L1 -19 7766 7448 962 258 18 40 chr15 3285207 3285337 -82410417 - L1MC3 LINE L1 -384 7401 7270 1885 151 6 26 chr15 3285337 3285649 -82410105 - AluJo SINE Alu -6 306 1 962 258 18 40 chr15 3285649 3285844 -82409910 - L1MC3 LINE L1 -515 7270 7083 1285 285 66 46 chr15 3285862 3286738 -82409016 - L1M4 LINE L1 -1453 4693 3787 180 0 0 0 chr15 3286738 3286758 -82408996 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1285 285 66 46 chr15 3286758 3287032 -82408722 - L1M4 LINE L1 -2359 3787 3520 395 208 52 7 chr15 3287073 3287208 -82408546 + MLT1E LTR MaLR 422 593 0 667 256 24 12 chr15 3287215 3287465 -82408289 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 3287555 3287577 -82408177 + AT_rich Low_complexity Low_complexity 1 22 0 349 269 15 15 chr15 3287825 3287955 -82407799 + L1ME1 LINE L1 6011 6140 -26 610 242 6 38 chr15 3288022 3288179 -82407575 + FAM SINE Alu 3 154 -31 471 35 0 0 chr15 3288181 3288238 -82407516 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2356 77 0 3 chr15 3288295 3288593 -82407161 - AluY SINE Alu -14 297 1 1840 244 32 25 chr15 3288719 3289244 -82406510 + MER54A LTR ERVL 1 529 -372 249 139 0 0 chr15 3289282 3289325 -82406429 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1626 230 28 83 chr15 3289333 3289898 -82405856 - MLT2B3 LTR ERVL -20 534 1 2603 209 16 5 chr15 3289898 3290509 -82405245 - ERVL-B3 LTR ERVL -7 5757 5140 1770 214 33 33 chr15 3290512 3290938 -82404816 - MSTC LTR MaLR 0 428 3 2343 231 20 52 chr15 3291125 3291814 -82403940 - LTR8 LTR ERV1 -9 682 16 1148 261 19 13 chr15 3291850 3292161 -82403593 - HUERS-P1 LTR ERV1 -5 6258 5946 6845 189 65 74 chr15 3292266 3293517 -82402237 - MER41-int LTR ERV1 -105 6226 4965 2361 77 7 3 chr15 3293517 3293827 -82401927 + AluY SINE Alu 1 311 0 6845 189 65 74 chr15 3293827 3294180 -82401574 - MER41-int LTR ERV1 -1366 4965 4610 1548 193 18 11 chr15 3294180 3294465 -82401289 - AluJo SINE Alu -23 289 3 6845 189 65 74 chr15 3294465 3296371 -82399383 - MER41-int LTR ERV1 -1721 4610 1816 1064 235 89 89 chr15 3296431 3296924 -82398830 - MER41-int LTR ERV1 -4114 3423 2931 2554 223 33 27 chr15 3296939 3297793 -82397961 - MER41-int LTR ERV1 -2594 2286 1280 894 218 66 9 chr15 3297793 3298134 -82397620 - LTR8 LTR ERV1 -364 363 1 899 284 61 78 chr15 3298134 3298665 -82397089 - MSTC-int LTR MaLR -221 1430 923 413 155 0 0 chr15 3298679 3298763 -82396991 + MSTC LTR MaLR 345 428 0 460 222 5 123 chr15 3298763 3298966 -82396788 + MSTC-int LTR MaLR 1 179 -1472 3012 217 11 10 chr15 3298968 3299669 -82396085 - ERVL-B3 LTR ERVL -1001 4763 4062 3216 265 82 12 chr15 3299875 3301094 -82394660 - ERVL-B3 LTR ERVL -4369 1285 10 1738 226 49 55 chr15 3301113 3301525 -82394229 - MLT2B3 LTR ERVL -8 546 136 4177 179 21 8 chr15 3301525 3302298 -82393456 - LTR39 LTR ERV1 0 783 1 1738 226 49 55 chr15 3302298 3302434 -82393320 - MLT2B3 LTR ERVL -418 136 1 1159 249 49 12 chr15 3302449 3302795 -82392959 + MER54A LTR ERVL 538 896 -5 395 273 106 48 chr15 3303123 3303450 -82392304 + HsTC2 DNA Tc2 1236 1543 -355 4766 51 10 0 chr15 3303450 3304035 -82391719 + LTR10C LTR ERV1 1 591 0 395 273 106 48 chr15 3304035 3304145 -82391609 + HsTC2 DNA Tc2 1543 1874 -24 545 215 81 6 chr15 3304225 3304397 -82391357 - MER4C LTR ERV1 -1 464 280 388 223 58 6 chr15 3304456 3304679 -82391075 - MER4C LTR ERV1 -196 269 6 7667 182 46 60 chr15 3304680 3306832 -82388922 - MER4C-int LTR ERV1 -8 6590 4091 1630 196 7 17 chr15 3306832 3307133 -82388621 + AluJb SINE Alu 1 298 -14 7667 182 46 60 chr15 3307133 3307639 -82388115 - MER4C-int LTR ERV1 -2507 4091 3579 1430 206 61 80 chr15 3307644 3307675 -82388079 - MER4C-int LTR ERV1 -1863 3017 2987 1581 211 0 20 chr15 3307675 3307969 -82387785 - AluJo SINE Alu -18 294 7 1430 206 61 80 chr15 3307969 3308525 -82387229 - MER4C-int LTR ERV1 -1893 2987 2441 398 122 27 0 chr15 3308527 3308601 -82387153 - L1PA15 LINE L1 -16 6149 6074 314 204 122 10 chr15 3308732 3308830 -82386924 - MER4C-int LTR ERV1 -5232 1099 991 316 49 0 0 chr15 3308840 3308881 -82386873 - MER4C-int LTR ERV1 -4793 1153 1113 457 209 23 16 chr15 3309067 3309196 -82386558 - MER4C-int LTR ERV1 -6356 242 113 1026 202 72 118 chr15 3309291 3309776 -82385978 - MER4C LTR ERV1 0 465 3 461 324 89 22 chr15 3310001 3310273 -82385481 - L1M4 LINE L1 -1050 5376 5077 2056 135 10 19 chr15 3310273 3310459 -82385295 - AluSg SINE Alu -2 308 125 207 0 0 0 chr15 3310459 3310482 -82385272 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2056 135 10 19 chr15 3310482 3310606 -82385148 - AluSg SINE Alu -185 125 1 461 324 89 22 chr15 3310606 3310657 -82385097 - L1M4 LINE L1 -1349 5077 5031 1114 235 78 35 chr15 3310804 3311229 -82384525 + LTR47B LTR ERVL 1 443 0 292 260 20 20 chr15 3312301 3312401 -82383353 + HERVL18 LTR ERVL 1225 1324 -4723 357 356 24 0 chr15 3313061 3313269 -82382485 + HERVL18 LTR ERVL 1852 2064 -3279 620 360 29 23 chr15 3313364 3313613 -82382141 + HERVL18 LTR ERVL 2312 2558 -2785 1952 169 0 13 chr15 3313613 3313927 -82381827 + AluSx SINE Alu 1 310 -2 620 360 29 23 chr15 3313927 3314366 -82381388 + HERVL18 LTR ERVL 2558 3004 -2339 999 251 34 17 chr15 3314560 3315179 -82380575 - L1MCa LINE L1 -3584 2842 2213 962 207 20 47 chr15 3315185 3315485 -82380269 + L1MCa LINE L1 1925 2216 -4210 386 297 157 13 chr15 3315493 3315722 -82380032 - MLT1E LTR MaLR -253 340 79 639 212 0 20 chr15 3315821 3315972 -82379782 - L1MD3 LINE L1 -283 7712 7565 1522 218 105 4 chr15 3316221 3316680 -82379074 - L1MC3 LINE L1 -6 7779 7275 5936 72 12 1 chr15 3316680 3317494 -82378260 - MER11B LTR ERVK -413 823 1 5978 199 32 56 chr15 3317506 3320213 -82375541 - L1MA1 LINE L1 -17 6285 3654 1403 205 6 75 chr15 3321175 3321497 -82374257 - AluJo SINE Alu -2 300 1 476 253 258 5 chr15 3321501 3321699 -82374055 + MLT1E LTR MaLR 346 593 0 793 225 29 16 chr15 3321726 3321970 -82373784 + L1MD3 LINE L1 7745 7991 -4 794 207 0 0 chr15 3321993 3322138 -82373616 + FRAM SINE Alu 13 157 -19 31 26 0 0 chr15 3322491 3322529 -82373225 + AT_rich Low_complexity Low_complexity 1 38 0 327 283 0 22 chr15 3322728 3322820 -82372934 + L1MC4 LINE L1 6614 6703 -1339 266 185 31 0 chr15 3322757 3322822 -82372932 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 * 339 300 0 0 chr15 3322822 3322912 -82372842 + L1MC4 LINE L1 6614 6703 -1339 1566 204 19 16 chr15 3323052 3323361 -82372393 + AluJb SINE Alu 3 312 0 254 140 0 20 chr15 3323380 3323430 -82372324 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 966 138 170 167 chr15 3324703 3325151 -82370603 - LTR47A LTR ERVL -2 450 2 895 253 38 112 chr15 3325312 3325971 -82369783 - LTR38B LTR ERV1 0 610 1 1525 306 53 38 chr15 3326168 3327320 -82368434 - LTR38B-int LTR ERV1 -251 7505 6337 1517 328 54 39 chr15 3327981 3329655 -82366099 - LTR38B-int LTR ERV1 -2913 4209 2511 277 273 45 0 chr15 3329870 3329958 -82365796 - LTR38B-int LTR ERV1 -4824 2298 2207 365 209 33 22 chr15 3330088 3330179 -82365575 - LTR38B-int LTR ERV1 -5045 2077 1986 627 325 18 24 chr15 3330672 3331004 -82364750 - LTR38B-int LTR ERV1 -5861 1261 932 287 339 58 0 chr15 3332191 3332312 -82363442 - LTR38B-int LTR ERV1 -971 815 688 782 304 38 46 chr15 3332563 3332958 -82362796 - LTR38B-int LTR ERV1 -1342 444 53 3516 104 10 45 chr15 3332979 3333584 -82362170 - L1PA13 LINE L1 -186 5977 5394 1105 188 8 0 chr15 3333581 3333815 -82361939 + L1P LINE L1 3265 3500 -2646 * 22 80 0 0 chr15 3333913 3333963 -82361791 + AT_rich Low_complexity Low_complexity 1 50 0 2753 182 66 5 chr15 3334257 3334860 -82360894 + LTR39 LTR ERV1 1 640 -143 1881 148 0 0 chr15 3334868 3335183 -82360571 - AluSq SINE Alu 0 315 1 618 212 7 22 chr15 3335183 3335320 -82360434 - AluJo SINE Alu -177 135 1 1374 90 0 0 chr15 3337042 3337220 -82358534 + AluSx SINE Alu 1 178 -134 299 271 69 62 chr15 3337250 3337738 -82358016 - LTR38B LTR ERV1 -65 545 1 243 88 0 0 chr15 3338148 3338182 -82357572 + (TG)n Simple_repeat Simple_repeat 2 35 0 1353 261 127 44 chr15 3338429 3339361 -82356393 - L1MC3 LINE L1 -913 6872 5864 583 261 51 5 chr15 3339372 3339734 -82356020 - L1MC3 LINE L1 -725 5453 5075 1669 176 168 8 chr15 3339786 3340155 -82355599 - MSTA LTR MaLR 0 428 1 5480 180 10 14 chr15 3340157 3341187 -82354567 - MSTA-int LTR MaLR -2 1578 553 1068 233 51 86 chr15 3341287 3341473 -82354281 - L1MC3 LINE L1 -472 7313 7122 2053 125 3 23 chr15 3341473 3341776 -82353978 + AluSx SINE Alu 1 297 -15 1068 233 51 86 chr15 3341776 3342122 -82353632 - L1MC3 LINE L1 -663 7122 6800 1754 258 32 5 chr15 3342251 3342816 -82352938 - L1MC3 LINE L1 -1352 6433 5854 1098 214 64 94 chr15 3342859 3343386 -82352368 - MER66A LTR ERV1 0 478 97 308 291 29 0 chr15 3343400 3343572 -82352182 - L1MC3 LINE L1 -748 5398 5222 3830 121 11 10 chr15 3343574 3344193 -82351561 - L1PA13 LINE L1 -6 6157 5538 2008 279 92 70 chr15 3344202 3346091 -82349663 - L1PA13 LINE L1 -707 5461 3528 320 191 36 12 chr15 3346186 3346270 -82349484 + MLT1E LTR MaLR 493 578 -15 786 212 48 8 chr15 3346284 3346534 -82349220 + L1MD3 LINE L1 7721 7980 -15 23 0 0 0 chr15 3346543 3346566 -82349188 + AT_rich Low_complexity Low_complexity 1 23 0 225 376 26 0 chr15 3348352 3348469 -82347285 + HsTC2 DNA Tc2 35 154 -1744 * 613 248 71 44 chr15 3348466 3348760 -82346994 + HsTC2 DNA Tc2 1233 1710 -188 2802 182 28 39 chr15 3349300 3349336 -82346418 - MSTA-int LTR MaLR -1010 641 606 2365 74 0 7 chr15 3349336 3349632 -82346122 - AluY SINE Alu -17 294 1 2802 182 28 39 chr15 3349632 3349707 -82346047 - MSTA-int LTR MaLR -1045 606 532 2253 136 0 0 chr15 3349707 3350017 -82345737 - AluSg SINE Alu 0 310 1 2802 182 28 39 chr15 3350017 3350552 -82345202 - MSTA-int LTR MaLR -1119 532 1 1938 163 129 5 chr15 3350552 3350933 -82344821 - MSTA LTR MaLR 0 428 1 2325 277 60 27 chr15 3350941 3352370 -82343384 - L1MC3 LINE L1 -1152 4994 3519 356 253 24 0 chr15 3352373 3352456 -82343298 + MLT1E LTR MaLR 350 434 -159 831 92 8 0 chr15 3352846 3352966 -82342788 - AluSg/x SINE Alu -15 295 175 294 328 35 0 chr15 3353027 3353143 -82342611 + HsTC2 DNA Tc2 35 154 -1744 693 225 65 33 chr15 3353180 3353487 -82342267 + HsTC2 DNA Tc2 1281 1773 -125 541 316 128 6 chr15 3353915 3354235 -82341519 - L1M4 LINE L1 -1033 5393 5035 22 88 0 0 chr15 3355319 3355376 -82340378 + AT_rich Low_complexity Low_complexity 1 57 0 600 201 69 0 chr15 3357287 3357461 -82338293 - L1MA7 LINE L1 0 6291 6106 1949 267 37 11 chr15 3357704 3358861 -82336893 - L1MCa LINE L1 -3016 3410 2222 313 222 94 8 chr15 3358866 3358983 -82336771 + L1MCa LINE L1 1938 2064 -4362 550 227 70 0 chr15 3358997 3359169 -82336585 + L1MCa LINE L1 2008 2191 -4235 5653 116 3 15 chr15 3359202 3360047 -82335707 - L1PA14 LINE L1 -2 6159 5339 2104 128 0 0 chr15 3360047 3360344 -82335410 - AluY SINE Alu -12 299 3 5653 116 3 15 chr15 3360344 3361127 -82334627 - L1PA14 LINE L1 -822 5339 4549 495 246 116 30 chr15 3361225 3361457 -82334297 - MLT1E LTR MaLR -341 252 1 599 250 0 0 chr15 3361461 3361605 -82334149 - L1MD3 LINE L1 -282 7713 7570 282 29 0 0 chr15 3361828 3361863 -82333891 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2001 118 34 3 chr15 3361885 3362181 -82333573 + AluSx SINE Alu 1 305 -7 1665 232 101 15 chr15 3362201 3362796 -82332958 - L1MC3 LINE L1 -28 7757 7112 2413 172 45 4 chr15 3362819 3363166 -82332588 - L1PB3 LINE L1 -7 6147 5775 321 26 0 0 chr15 3363166 3363204 -82332550 + (CA)n Simple_repeat Simple_repeat 2 39 0 2413 172 45 4 chr15 3363204 3363321 -82332433 - L1PB3 LINE L1 -379 5775 5664 360 0 0 0 chr15 3363321 3363361 -82332393 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr15 3363360 3363398 -82332356 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1592 179 18 0 chr15 3363398 3363671 -82332083 - AluSx SINE Alu -34 278 1 4021 125 1 19 chr15 3363678 3364326 -82331428 + LTR8 LTR ERV1 55 691 0 481 265 89 51 chr15 3364844 3365101 -82330653 - L1M4 LINE L1 -1127 5019 4753 1859 157 14 7 chr15 3365105 3365398 -82330356 - AluSx SINE Alu -17 295 1 1205 215 16 60 chr15 3365453 3365769 -82329985 - AluJo SINE Alu 0 302 1 22 0 0 0 chr15 3365895 3365917 -82329837 + AT_rich Low_complexity Low_complexity 1 22 0 1702 174 3 24 chr15 3365918 3366212 -82329542 - AluJb SINE Alu -24 288 1 29 28 0 0 chr15 3367381 3367417 -82328337 + AT_rich Low_complexity Low_complexity 1 36 0 780 188 71 67 chr15 3367420 3367675 -82328079 - MER4-int LTR ERV1 -127 6631 6376 595 216 57 18 chr15 3367644 3367821 -82327933 - MER4-int LTR ERV1 -593 6165 3950 * 1733 123 0 16 chr15 3367905 3368156 -82327598 + AluSc SINE Alu 45 291 -18 898 217 46 39 chr15 3368569 3368993 -82326761 - MER4-int LTR ERV1 -2138 4021 2474 739 168 41 38 chr15 3369076 3369353 -82326401 - MER4-int LTR ERV1 -2900 3698 2403 351 255 9 47 chr15 3369472 3369578 -82326176 + L1MC4 LINE L1 6614 6715 -1327 424 226 35 0 chr15 3370146 3370261 -82325493 + L1MCa LINE L1 2101 2219 -4207 423 282 153 16 chr15 3370261 3370509 -82325245 - MLT1E LTR MaLR -248 345 64 21 0 0 0 chr15 3370812 3370833 -82324921 + AT_rich Low_complexity Low_complexity 1 21 0 42 0 0 0 chr15 3370925 3370967 -82324787 + AT_rich Low_complexity Low_complexity 1 42 0 974 205 111 3 chr15 3370968 3371256 -82324498 - L1MC3 LINE L1 -19 7766 7448 580 221 15 60 chr15 3371262 3371392 -82324362 - L1MC3 LINE L1 -384 7401 7282 1704 182 3 23 chr15 3371392 3371699 -82324055 - AluJo SINE Alu -11 301 1 580 221 15 60 chr15 3371699 3371767 -82323987 - L1MC3 LINE L1 -503 7282 7212 6352 119 24 44 chr15 3371767 3372975 -82322779 - MER11C LTR ERVK 0 1071 1 329 315 23 8 chr15 3372976 3373106 -82322648 - L1MC3 LINE L1 -571 7214 7083 1089 281 64 53 chr15 3373124 3374286 -82321468 - L1M4 LINE L1 -1453 4693 3520 455 214 304 6 chr15 3374294 3374462 -82321292 + MLT1E LTR MaLR 376 593 0 730 240 24 12 chr15 3374470 3374720 -82321034 + L1MD3 LINE L1 7731 7983 -12 667 237 29 35 chr15 3375081 3375254 -82320500 + FAM SINE Alu 3 174 -1 2066 128 0 3 chr15 3375315 3375613 -82320141 - AluY SINE Alu -14 297 1 1734 247 36 25 chr15 3375739 3376262 -82319492 + MER54A LTR ERVL 1 529 -372 1622 259 38 30 chr15 3376346 3376876 -82318878 - MLT2B3 LTR ERVL -20 534 1 2512 206 14 26 chr15 3376876 3377293 -82318461 - ERVL-B3 LTR ERVL -7 5757 5337 186 118 0 0 chr15 3377293 3377327 -82318427 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2279 81 3 0 chr15 3377330 3377615 -82318139 - AluY SINE Alu -25 286 1 2512 206 14 26 chr15 3377615 3377818 -82317936 - ERVL-B3 LTR ERVL -429 5335 5140 1778 216 31 33 chr15 3377822 3378247 -82317507 - MSTC LTR MaLR -2 426 3 238 308 67 0 chr15 3378250 3378370 -82317384 - MSTC-int LTR MaLR -1 1734 1607 2360 232 19 52 chr15 3378433 3379123 -82316631 - LTR8 LTR ERV1 -9 682 16 1094 291 19 6 chr15 3379156 3379472 -82316282 - HUERS-P1 LTR ERV1 0 6263 5944 865 210 179 14 chr15 3379551 3379841 -82315913 - PRIMA41-int LTR ERV1 -57 6274 5937 9334 179 40 89 chr15 3380012 3380990 -82314764 - PRIMA41-int LTR ERV1 -524 5422 4398 207 0 0 0 chr15 3380990 3381013 -82314741 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9334 179 40 89 chr15 3381013 3381169 -82314585 - PRIMA41-int LTR ERV1 -1548 4398 4236 1595 202 11 11 chr15 3381169 3381456 -82314298 - AluJo SINE Alu -23 289 3 9334 179 40 89 chr15 3381456 3383340 -82312414 - PRIMA41-int LTR ERV1 -1710 4236 1816 1000 261 77 54 chr15 3383400 3383882 -82311872 - PRIMA41-int LTR ERV1 -4114 3423 2931 2543 223 33 27 chr15 3383897 3384751 -82311003 - PRIMA41-int LTR ERV1 -2594 2286 1280 946 211 150 85 chr15 3384751 3385092 -82310662 - LTR8 LTR ERV1 -364 363 1 838 297 55 72 chr15 3385092 3385622 -82310132 - MSTC-int LTR MaLR -221 1430 923 376 179 0 0 chr15 3385636 3385720 -82310034 + MSTC LTR MaLR 345 428 0 428 231 10 128 chr15 3385720 3385923 -82309831 + MSTC-int LTR MaLR 1 179 -1472 3110 215 13 7 chr15 3385925 3386623 -82309131 - ERVL-B3 LTR ERVL -1001 4763 4062 484 292 26 17 chr15 3386634 3386815 -82308939 - PRIMA41-int LTR ERV1 -1990 5766 5581 1933 116 0 77 chr15 3386815 3387142 -82308612 + AluSg SINE Alu 1 302 -8 484 292 26 17 chr15 3387142 3387193 -82308561 - PRIMA41-int LTR ERV1 -2175 5581 5532 9670 232 62 8 chr15 3387715 3390265 -82305489 - ERVL-B3 LTR ERVL -2904 2860 172 1892 219 46 48 chr15 3390428 3390838 -82304916 - MLT2B3 LTR ERVL -8 546 136 4185 176 22 7 chr15 3390838 3391609 -82304145 - LTR39 LTR ERV1 0 783 1 1892 219 46 48 chr15 3391609 3391745 -82304009 - MLT2B3 LTR ERVL -418 136 1 1259 236 50 11 chr15 3391745 3392105 -82303649 + MER54A LTR ERVL 523 896 -5 450 254 102 44 chr15 3392587 3392822 -82302932 + HsTC2 DNA Tc2 1507 1770 -128 4775 56 0 0 chr15 3392822 3393413 -82302341 + LTR10C LTR ERV1 1 591 0 450 254 102 44 chr15 3393413 3393519 -82302235 + HsTC2 DNA Tc2 1770 1868 -30 501 222 102 6 chr15 3393602 3393778 -82301976 - MER4C LTR ERV1 0 465 273 409 225 48 11 chr15 3393838 3394055 -82301699 - MER4A LTR ERV1 -203 262 6 7356 189 52 59 chr15 3394056 3396189 -82299565 - MER4A-int LTR ERV1 -8 6590 2831 1625 201 3 16 chr15 3396189 3396492 -82299262 + AluJb SINE Alu 1 299 -13 7356 189 52 59 chr15 3396492 3396999 -82298755 - MER4A-int LTR ERV1 -3767 2831 2322 1513 230 0 3 chr15 3397039 3397330 -82298424 - AluJo SINE Alu -22 290 1 1605 186 48 81 chr15 3397380 3397885 -82297869 - MER4C-int LTR ERV1 -1952 2928 2441 415 137 14 0 chr15 3397889 3397962 -82297792 - L1PA15 LINE L1 -18 6147 6074 363 184 122 10 chr15 3398093 3398191 -82297563 - MER4C-int LTR ERV1 -5232 1099 991 304 51 0 0 chr15 3398203 3398242 -82297512 - MER4C-int LTR ERV1 -5764 1773 1735 441 209 23 16 chr15 3398428 3398557 -82297197 - MER4C-int LTR ERV1 -6356 242 113 714 213 25 35 chr15 3398652 3399134 -82296620 - MER4C LTR ERV1 0 695 3 343 324 75 42 chr15 3399359 3399558 -82296196 - L1M4 LINE L1 -1050 5096 4882 2435 84 3 0 chr15 3399558 3399867 -82295887 + AluY SINE Alu 1 310 -1 343 324 75 42 chr15 3399867 3399973 -82295781 - L1M4 LINE L1 -1264 4882 4781 1743 118 95 0 chr15 3399976 3400128 -82295626 - AluSx SINE Alu -24 288 152 189 0 0 0 chr15 3400128 3400149 -82295605 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1743 118 95 0 chr15 3400149 3400259 -82295495 - AluSx SINE Alu -160 152 1 463 193 42 8 chr15 3400460 3400579 -82295175 + LTR47A LTR ERVL 1 123 -329 341 250 12 0 chr15 3400629 3400713 -82295041 + LTR47B LTR ERVL 359 443 0 310 234 0 0 chr15 3401643 3401720 -82294034 + LTR57-int LTR ERVL 1248 1324 -4723 390 326 34 8 chr15 3402343 3402600 -82293154 + LTR57-int LTR ERVL 1852 2086 -1332 521 361 22 26 chr15 3402698 3402947 -82292807 + LTR57-int LTR ERVL 2312 2561 -2782 1839 162 3 10 chr15 3402947 3403244 -82292510 + AluSq SINE Alu 1 295 -18 521 361 22 26 chr15 3403244 3403687 -82292067 + LTR57-int LTR ERVL 2561 3001 -2342 892 266 47 6 chr15 3403896 3404490 -82291264 - L1MCa LINE L1 -3595 2831 2213 1029 146 22 95 chr15 3404496 3404811 -82290943 + L1MCa LINE L1 1925 2216 -4210 410 282 124 71 chr15 3404819 3405142 -82290612 - MLT1E LTR MaLR -253 340 1 659 223 0 0 chr15 3405147 3405295 -82290459 - L1MD3 LINE L1 -283 7712 7565 28 29 0 0 chr15 3405301 3405336 -82290418 + AT_rich Low_complexity Low_complexity 1 35 0 4200 253 68 45 chr15 3405542 3406355 -82289399 - L1MC3 LINE L1 -6 7779 6986 2227 125 0 0 chr15 3406355 3406666 -82289088 - AluY SINE Alu 0 311 1 4200 253 68 45 chr15 3406666 3407447 -82288307 - L1MC3 LINE L1 -799 6986 6134 1814 157 3 26 chr15 3407447 3407759 -82287995 - AluSx SINE Alu -7 305 1 4200 253 68 45 chr15 3407759 3408037 -82287717 - L1MC3 LINE L1 -1651 6134 5864 559 251 36 5 chr15 3408047 3408380 -82287374 - L1MC3 LINE L1 -720 5454 5113 231 213 32 32 chr15 3408377 3408471 -82287283 - L1MC3 LINE L1 -987 5159 5066 * 2299 126 55 2 chr15 3408471 3408869 -82286885 - MSTA LTR MaLR 0 428 10 413 286 82 5 chr15 3408918 3409138 -82286616 - L1MC3 LINE L1 -1121 5025 4789 7069 96 4 19 chr15 3409180 3410253 -82285501 - MER11C LTR ERVK -14 1057 1 6217 201 31 54 chr15 3410265 3412968 -82282786 - L1MA1 LINE L1 -17 6285 3654 1437 198 3 75 chr15 3413926 3414245 -82281509 - AluJo SINE Alu -6 296 1 467 258 258 5 chr15 3414249 3414447 -82281307 + MLT1E LTR MaLR 346 593 0 800 214 30 17 chr15 3414474 3414708 -82281046 + L1MD3 LINE L1 7745 7981 -14 23 0 0 0 chr15 3414714 3414737 -82281017 + AT_rich Low_complexity Low_complexity 1 23 0 766 208 0 0 chr15 3414741 3414885 -82280869 + FRAM SINE Alu 13 156 -20 28 48 0 0 chr15 3415232 3415274 -82280480 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr15 3415472 3415506 -82280248 + (TA)n Simple_repeat Simple_repeat 2 35 0 1543 202 0 4 chr15 3415640 3415917 -82279837 + AluJb SINE Alu 1 276 -36 316 198 12 12 chr15 3415917 3416003 -82279751 + GA-rich Low_complexity Low_complexity 3 88 0 272 301 0 0 chr15 3416799 3416882 -82278872 - MER66A-int LTR ERV1 -6387 735 653 273 333 0 0 chr15 3417603 3417693 -82278061 - MER66A-int LTR ERV1 -971 815 726 774 329 25 33 chr15 3417974 3418369 -82277385 - MER66A-int LTR ERV1 -1342 444 53 1544 81 8 8 chr15 3418390 3418626 -82277128 - L1PA12 LINE L1 -191 5977 5742 850 225 89 52 chr15 3418630 3418954 -82276800 - MER66A LTR ERV1 -46 432 97 3069 275 61 28 chr15 3419114 3420895 -82274859 - L1M4 LINE L1 -744 5402 3564 330 190 52 16 chr15 3420936 3421118 -82274636 + MLT1E LTR MaLR 350 593 0 681 230 34 19 chr15 3421120 3421385 -82274369 + L1MD3 LINE L1 7724 7992 -3 306 325 26 0 chr15 3423501 3423618 -82272136 + HsTC2 DNA Tc2 35 154 -1744 * 688 286 29 58 chr15 3423613 3424096 -82271658 + HsTC2 DNA Tc2 1231 1875 -23 348 353 31 9 chr15 3424366 3424590 -82271164 - L1M4 LINE L1 -1034 5112 4884 1318 240 0 13 chr15 3424724 3425028 -82270726 - AluJo SINE Alu -12 300 1 2848 7 0 0 chr15 3425480 3425788 -82269966 + AluY SINE Alu 1 308 -3 259 78 0 4 chr15 3427069 3427288 -82268466 + AluSx SINE Alu 1 300 0 * 284 301 65 63 chr15 3427285 3427774 -82267980 - LTR38 LTR ERV1 -66 490 1 22 35 0 0 chr15 3428042 3428071 -82267683 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr15 3428182 3428219 -82267535 + (TG)n Simple_repeat Simple_repeat 2 38 0 2679 211 88 21 chr15 3428455 3429162 -82266592 - MER49 LTR ERV1 -169 754 1 1134 208 22 45 chr15 3429163 3429537 -82266217 - MER49-int LTR ERV1 -3 7093 6376 624 212 57 18 chr15 3429506 3429683 -82266071 - MER49-int LTR ERV1 -593 6165 3950 * 1682 106 16 8 chr15 3429767 3430012 -82265742 + AluSc SINE Alu 45 291 -18 261 174 0 151 chr15 3430244 3430330 -82265424 - MER49-int LTR ERV1 -4262 3858 3786 977 207 34 37 chr15 3430417 3430849 -82264905 - LTR49-int LTR ERV1 -2147 4184 3731 756 205 43 75 chr15 3430929 3431344 -82264410 - LTR49-int LTR ERV1 -2900 3698 3297 1662 280 4 6 chr15 3431348 3431827 -82263927 - ERVL-B3 LTR ERVL -3961 1803 1326 1001 187 6 11 chr15 3431831 3432013 -82263741 - AluSp SINE Alu -18 295 115 3296 264 45 20 chr15 3432120 3432321 -82263433 - ERVL-B3 LTR ERVL -4441 1252 1058 826 219 0 18 chr15 3432321 3432490 -82263264 - FRAM SINE Alu 0 166 1 3296 264 45 20 chr15 3432490 3433491 -82262263 - ERVL-B3 LTR ERVL -4635 1058 1 698 236 13 52 chr15 3433491 3433553 -82262201 - MLT2B3 LTR ERVL 0 554 491 315 0 0 0 chr15 3433553 3433588 -82262166 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 698 236 13 52 chr15 3433588 3433754 -82262000 - MLT2B3 LTR ERVL -63 491 335 1539 249 123 40 chr15 3433834 3434775 -82260979 - L1MC3 LINE L1 -913 7152 6134 2575 271 70 24 chr15 3434776 3435182 -82260572 - L1MC3 LINE L1 -725 5733 5347 1569 188 169 5 chr15 3435182 3435550 -82260204 - MSTA LTR MaLR 0 428 1 8038 191 18 22 chr15 3435552 3436590 -82259164 - MSTA-int LTR MaLR -2 1649 608 183 42 0 0 chr15 3436590 3436614 -82259140 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2081 98 0 7 chr15 3436624 3436900 -82258854 - AluY SINE Alu -37 274 1 8038 191 18 22 chr15 3436900 3436967 -82258787 - MSTA-int LTR MaLR -1052 599 533 2283 118 3 0 chr15 3436967 3437271 -82258483 - AluSg SINE Alu 0 310 6 8038 191 18 22 chr15 3437271 3437810 -82257944 - MSTA-int LTR MaLR -1118 533 1 1864 144 155 11 chr15 3437810 3438184 -82257570 - MSTA LTR MaLR 0 428 1 2575 271 70 24 chr15 3438184 3439626 -82256128 - L1MC3 LINE L1 -1110 5348 3799 519 212 264 5 chr15 3439630 3439823 -82255931 + MLT1E LTR MaLR 351 593 0 722 233 29 10 chr15 3439829 3440035 -82255719 + L1MD3 LINE L1 7729 7938 -57 26 0 0 0 chr15 3440035 3440061 -82255693 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 3440089 3440113 -82255641 + AT_rich Low_complexity Low_complexity 1 24 0 1923 248 38 25 chr15 3442284 3443452 -82252302 - L1MC3 LINE L1 -3015 3411 2227 242 215 37 52 chr15 3443447 3443582 -82252172 + L1MCa LINE L1 1936 2068 -4358 * 542 220 45 11 chr15 3443574 3443751 -82252003 + L1MCa LINE L1 2008 2190 -4236 26 30 0 0 chr15 3443751 3443784 -82251970 + AT_rich Low_complexity Low_complexity 1 33 0 5400 116 5 16 chr15 3443788 3444625 -82251129 - L1PA14 LINE L1 -3 6158 5339 2083 100 3 7 chr15 3444625 3444915 -82250839 - AluSc SINE Alu -19 290 2 5400 116 5 16 chr15 3444915 3445699 -82250055 - L1PA14 LINE L1 -822 5339 4547 549 236 88 32 chr15 3445807 3446023 -82249731 - MLT1E LTR MaLR -365 228 1 618 210 3 0 chr15 3446028 3446171 -82249583 - L1MD3 LINE L1 -299 7696 7488 1893 146 36 3 chr15 3446443 3446745 -82249009 + AluSx SINE Alu 1 312 0 1753 240 102 7 chr15 3446762 3447349 -82248405 - L1MC3 LINE L1 -31 7754 7112 2084 153 57 5 chr15 3447372 3447718 -82248036 - L1PB3 LINE L1 -7 6147 5778 393 22 0 0 chr15 3447718 3447764 -82247990 + (CA)n Simple_repeat Simple_repeat 2 47 0 2084 153 57 5 chr15 3447764 3447803 -82247951 - L1PB3 LINE L1 -376 5778 5742 561 138 0 0 chr15 3447904 3447998 -82247756 - L1PB3 LINE L1 -397 5757 5664 378 0 0 0 chr15 3447998 3448040 -82247714 + (TG)n Simple_repeat Simple_repeat 1 42 0 269 129 6 0 chr15 3448056 3448104 -82247650 - Alu SINE Alu -20 282 242 839 283 72 37 chr15 3448141 3448947 -82246807 - L1M4 LINE L1 -1659 4487 3654 1249 195 6 114 chr15 3449903 3450236 -82245518 - AluJo SINE Alu -5 297 1 501 224 265 15 chr15 3450242 3450438 -82245316 + MLT1E LTR MaLR 349 593 0 832 205 30 17 chr15 3450465 3450699 -82245055 + L1MD3 LINE L1 7745 7981 -14 22 0 0 0 chr15 3450705 3450727 -82245027 + AT_rich Low_complexity Low_complexity 1 22 0 737 217 0 0 chr15 3450731 3450874 -82244880 + FRAM SINE Alu 13 155 -21 31 26 0 0 chr15 3451221 3451259 -82244495 + AT_rich Low_complexity Low_complexity 1 38 0 308 194 28 14 chr15 3451500 3451572 -82244182 + L1MCa LINE L1 1996 2068 -4358 195 184 0 0 chr15 3451574 3451612 -82244142 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1482 192 0 38 chr15 3451745 3452032 -82243722 + AluJb SINE Alu 1 276 -36 277 205 13 13 chr15 3452032 3452110 -82243644 + GA-rich Low_complexity Low_complexity 3 80 0 568 213 8 0 chr15 3453380 3453502 -82242252 - LTR47A LTR ERVL -3 449 327 1396 315 43 22 chr15 3453658 3454486 -82241268 - PABL_B-int LTR ERV1 -251 7505 6660 1730 330 44 36 chr15 3455502 3457156 -82238598 - PABL_B-int LTR ERV1 -2945 4177 2511 29 0 0 0 chr15 3509266 3509295 -82186459 + AT_rich Low_complexity Low_complexity 1 29 0 1017 136 81 10 chr15 3509591 3509789 -82185965 - MER101 LTR ERV1 -1 473 262 1710 148 93 0 chr15 3509796 3509918 -82185836 + AluSx SINE Alu 9 118 -194 216 0 0 0 chr15 3509918 3509942 -82185812 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1710 148 93 0 chr15 3509942 3510097 -82185657 + AluSx SINE Alu 118 312 0 719 158 0 0 chr15 3510135 3510255 -82185499 - MER101 LTR ERV1 -354 120 1 300 365 33 39 chr15 3510358 3510539 -82185215 - HAL1 LINE L1 -2326 181 2 653 208 48 24 chr15 3511311 3511518 -82184236 - AluSg/x SINE Alu -11 298 87 1960 123 10 10 chr15 3511740 3512059 -82183695 - AluSx SINE Alu 0 312 1 1989 150 7 3 chr15 3512063 3512357 -82183397 - AluSx SINE Alu -16 296 2 2108 119 44 0 chr15 3512426 3512769 -82182985 + Tigger3(Golem) DNA MER2_type 2605 2962 -67 2241 172 78 38 chr15 3512770 3512970 -82182784 + MER4B LTR ERV1 1 192 -418 1970 138 17 0 chr15 3512970 3513267 -82182487 + AluSx SINE Alu 4 305 -7 2241 172 78 38 chr15 3513267 3513618 -82182136 + MER4B LTR ERV1 192 574 -36 362 286 8 0 chr15 3514072 3514191 -82181563 + L1MEc LINE L1 111 230 -6166 1109 171 5 0 chr15 3514661 3514866 -82180888 + MER47A DNA MER2_type 3 208 -158 440 217 9 17 chr15 3515281 3515429 -82180325 + ALR/Alpha Satellite centromeric 1 146 -62 368 225 25 17 chr15 3515721 3515841 -82179913 - Tigger5 DNA MER2_type -22 2301 2181 379 163 12 12 chr15 3516049 3516135 -82179619 - L1MC3 LINE L1 -203 7582 7497 261 57 0 0 chr15 3516189 3516224 -82179530 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 711 255 18 99 chr15 3516280 3516664 -82179090 - L1MC3 LINE L1 -787 6998 6646 381 230 9 9 chr15 3516668 3516781 -82178973 - L1MC3 LINE L1 -2029 5966 5854 538 245 32 69 chr15 3516781 3516938 -82178816 - L1MC3 LINE L1 -720 5454 5293 2266 91 20 3 chr15 3516938 3517234 -82178520 + AluSq SINE Alu 2 302 -11 538 245 32 69 chr15 3517234 3517521 -82178233 - L1MC3 LINE L1 -881 5293 5013 825 216 9 22 chr15 3517537 3517769 -82177985 - L1MC3 LINE L1 -1304 4842 4614 2667 209 29 18 chr15 3517831 3518535 -82177219 - L1PA16 LINE L1 -3 6165 5487 7879 94 39 20 chr15 3518642 3518707 -82177047 - HSMAR1 DNA Mariner -47 1240 1178 2086 114 0 0 chr15 3518707 3519016 -82176738 - AluSx SINE Alu 0 309 1 7879 94 39 20 chr15 3519016 3520167 -82175587 - HSMAR1 DNA Mariner -109 1178 1 1634 198 13 11 chr15 3520167 3520540 -82175214 - L1PA16 LINE L1 -1683 4463 4090 1498 123 3 78 chr15 3520540 3520822 -82174932 + L1PA15 LINE L1 5901 6163 -2 3285 215 102 55 chr15 3520825 3522074 -82173680 - L1MC3 LINE L1 -621 7164 5858 296 230 93 12 chr15 3522089 3522250 -82173504 - L1MC3 LINE L1 -740 5438 5265 * 1788 124 7 70 chr15 3522212 3522640 -82173114 - L1MA2 LINE L1 0 6304 5265 2259 181 67 85 chr15 3522745 3522777 -82172977 - MER67B LTR ERV1 -144 517 486 3126 176 75 52 chr15 3522777 3523488 -82172266 + LTR8A LTR ERV1 1 727 0 2259 181 67 85 chr15 3523488 3524031 -82171723 - MER67B LTR ERV1 -175 486 1 4608 202 22 18 chr15 3524049 3525188 -82170566 + L1MB2 LINE L1 4638 5771 -400 1220 186 53 9 chr15 3525188 3525414 -82170340 - MER46A DNA MER2_type 0 236 1 4608 202 22 18 chr15 3525414 3525757 -82169997 + L1MB2 LINE L1 5771 6123 -48 824 227 7 7 chr15 3525757 3525907 -82169847 + FRAM SINE Alu 1 150 -16 4608 202 22 18 chr15 3525907 3525943 -82169811 + L1MB2 LINE L1 6123 6157 -14 666 179 50 7 chr15 3526043 3526183 -82169571 + LTR10C LTR ERV1 446 591 0 2247 114 0 0 chr15 3527606 3527905 -82167849 + AluSx SINE Alu 7 305 -7 2445 102 151 5 chr15 3528095 3528486 -82167268 - LTR7 LTR ERV1 -2 448 1 2410 96 48 13 chr15 3528486 3528863 -82166891 - HERVH LTR ERV1 0 7713 7324 1215 163 9 26 chr15 3528863 3529090 -82166664 - HERVH LTR ERV1 -1894 5819 5597 8075 126 1 1 chr15 3529091 3530256 -82165498 - HERVH LTR ERV1 -2567 5146 3994 1552 150 0 4 chr15 3530266 3530512 -82165242 - HERVH LTR ERV1 -3977 3736 3492 1005 120 7 0 chr15 3530502 3530652 -82165102 - HERVH LTR ERV1 -4423 3290 3140 * 14914 110 21 11 chr15 3530646 3533360 -82162394 - HERVH LTR ERV1 -4726 2987 1 2626 90 125 8 chr15 3533362 3533763 -82161991 - LTR7 LTR ERV1 -2 448 1 331 264 39 16 chr15 3534312 3534441 -82161313 - L1MEc LINE L1 -6153 243 112 4315 88 22 0 chr15 3534601 3535228 -82160526 - L1P LINE L1 -1063 5083 4443 5839 34 4 1 chr15 3535328 3536028 -82159726 - L1P LINE L1 -1566 4580 3879 2275 33 3 0 chr15 3536019 3536949 -82158805 + L1PA2 LINE L1 5089 6155 0 * 3356 34 5 0 chr15 3536960 3537344 -82158410 + L1PA4 LINE L1 5770 6155 0 336 292 70 70 chr15 3537589 3537873 -82157881 - HsTC2 DNA Tc2 -198 1700 1241 5138 103 5 1 chr15 3539029 3539691 -82156063 - MER4A LTR ERV1 0 664 1 2811 133 164 30 chr15 3539796 3540337 -82155417 - LTR18B LTR ERVL 0 614 1 2661 246 53 31 chr15 3540486 3541313 -82154441 - L1MDa LINE L1 -3138 3402 2547 2286 73 30 3 chr15 3541313 3541615 -82154139 - AluY SINE Alu -1 310 1 2661 246 53 31 chr15 3541615 3541842 -82153912 - L1MDa LINE L1 -3993 2547 2326 944 201 22 48 chr15 3541852 3542125 -82153629 + L1MCa LINE L1 1955 2220 -4206 983 268 104 19 chr15 3542125 3542442 -82153312 - MLT1E LTR MaLR -249 344 1 571 261 49 0 chr15 3542446 3542588 -82153166 - L1MD3 LINE L1 -282 7713 7565 532 163 0 10 chr15 3542832 3542930 -82152824 - L1MC3 LINE L1 -11 7774 7678 262 277 25 57 chr15 3543035 3543194 -82152560 - L1M4 LINE L1 -2391 3755 3602 3794 234 126 17 chr15 3543221 3544514 -82151240 - L1M4 LINE L1 -1112 5034 3601 382 190 83 33 chr15 3544599 3544700 -82151054 + MLT1E LTR MaLR 281 427 -166 904 199 99 5 chr15 3544758 3544969 -82150785 - MER34 LTR ERV1 -283 259 29 25 51 0 0 chr15 3545546 3545585 -82150169 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr15 3545643 3545683 -82150071 + AT_rich Low_complexity Low_complexity 1 40 0 21886 121 66 1 chr15 3545683 3549018 -82146736 - L1P LINE L1 -818 5336 1785 5840 153 19 83 chr15 3549036 3550304 -82145450 + L1P LINE L1 591 1777 -4369 874 142 39 0 chr15 3550314 3550469 -82145285 - L1M2 LINE L1 -821 5479 5319 465 348 103 11 chr15 3551924 3552275 -82143479 + L1M4 LINE L1 4755 5137 -1009 183 296 19 0 chr15 3552376 3552430 -82143324 + MIR SINE MIR 137 191 -71 863 269 83 28 chr15 3552527 3552962 -82142792 - HsTC2 DNA Tc2 -22 1876 1242 2414 73 0 25 chr15 3552962 3553277 -82142477 - AluY SINE Alu -4 307 1 251 354 35 0 chr15 3553293 3553406 -82142348 - HsTC2 DNA Tc2 -1744 154 38 247 241 0 0 chr15 3553651 3553705 -82142049 - MER54A LTR ERVL -834 67 14 252 218 36 0 chr15 3553903 3553958 -82141796 - MER52A LTR ERV1 0 1755 1699 5005 226 78 47 chr15 3553970 3554510 -82141244 - MER52A LTR ERV1 -270 1485 964 180 0 0 0 chr15 3554510 3554530 -82141224 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5005 226 78 47 chr15 3554530 3555428 -82140326 - MER52A LTR ERV1 -791 964 1 868 246 104 106 chr15 3555611 3556586 -82139168 + LTR28 LTR ERV1 1 1755 0 656 224 64 4 chr15 3556587 3556852 -82138902 + L1M4 LINE L1 5215 5485 -699 552 223 0 9 chr15 3558352 3558464 -82137290 + FLAM_A SINE Alu 20 130 -12 200 278 0 0 chr15 3558914 3558968 -82136786 + MIR SINE MIR 1 54 -208 3033 44 14 0 chr15 3559093 3559460 -82136294 - LTR10C LTR ERV1 -219 372 1 657 103 0 0 chr15 3560297 3560384 -82135370 + AluY SINE Alu 205 291 -20 476 13 66 0 chr15 3560483 3560559 -82135195 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 1663 224 42 8 chr15 3560562 3560919 -82134835 - MLT1A2 LTR MaLR -4 370 2 286 78 20 20 chr15 3560925 3560976 -82134778 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 785 317 65 18 chr15 3561168 3561565 -82134189 + L2 LINE L2 2827 3242 -71 237 33 0 0 chr15 3561700 3561730 -82134024 + (CA)n Simple_repeat Simple_repeat 2 31 0 1991 132 24 7 chr15 3562032 3562356 -82133398 + AluSx SINE Alu 1 312 0 2308 92 0 7 chr15 3567126 3567432 -82128322 + AluSx SINE Alu 1 304 -8 213 255 0 0 chr15 3567498 3567549 -82128205 - MIR SINE MIR -188 74 24 808 103 9 9 chr15 3568421 3568537 -82127217 - AluSg1 SINE Alu -193 116 1 709 294 59 88 chr15 3568537 3569229 -82126525 + L2 LINE L2 2633 3312 -1 237 278 0 14 chr15 3569506 3569578 -82126176 - MIR SINE MIR -64 198 128 297 316 35 18 chr15 3570556 3570670 -82125084 + MIR SINE MIR 20 135 -73 554 269 88 35 chr15 3572044 3572282 -82123472 + L1M4 LINE L1 526 789 -5595 2240 102 6 13 chr15 3572282 3572596 -82123158 - AluSx SINE Alu 0 312 1 554 269 88 35 chr15 3572596 3572699 -82123055 + L1M4 LINE L1 789 885 -5499 * 1698 213 35 25 chr15 3572695 3573206 -82122548 + L1M4 LINE L1 1173 1688 -4696 351 280 82 78 chr15 3573306 3573574 -82122180 + L1M4 LINE L1 5064 5332 -1050 2562 39 39 3 chr15 3573731 3574098 -82121656 + L1PA4 LINE L1 5785 6163 0 266 239 72 43 chr15 3574266 3574404 -82121350 - HsTC2 DNA Tc2 -25 1873 1732 847 155 19 0 chr15 3574404 3574565 -82121189 + L1M2 LINE L1 5509 5672 -619 446 311 75 23 chr15 3574567 3574872 -82120882 - HsTC2 DNA Tc2 -169 1729 1233 2422 84 3 0 chr15 3575535 3575843 -82119911 + AluSx SINE Alu 1 309 -3 856 236 209 27 chr15 3577041 3577620 -82118134 + L1M4 LINE L1 4593 5301 -845 1619 141 15 19 chr15 3577620 3577890 -82117864 + AluJb SINE Alu 26 294 -18 856 236 209 27 chr15 3577890 3577950 -82117804 + L1M4 LINE L1 5301 5349 -797 2384 208 79 25 chr15 3577991 3578530 -82117224 + L1MC3 LINE L1 7072 7656 -129 2190 61 0 48 chr15 3578530 3578863 -82116891 + AluY SINE Alu 1 319 0 2384 208 79 25 chr15 3578863 3578992 -82116762 + L1MC3 LINE L1 7656 7777 -8 200 173 0 39 chr15 3579100 3579152 -82116602 + T-rich Low_complexity Low_complexity 2 51 0 474 247 34 14 chr15 3579228 3579374 -82116380 + L1MD3 LINE L1 7565 7713 -282 672 296 71 40 chr15 3579389 3579713 -82116041 + MLT1E LTR MaLR 12 345 -248 969 158 43 63 chr15 3579713 3579752 -82116002 - L1MCa LINE L1 -4207 2219 2181 2176 119 0 0 chr15 3579752 3580047 -82115707 + AluSx SINE Alu 1 295 -17 969 158 43 63 chr15 3580047 3580310 -82115444 - L1MCa LINE L1 -4245 2181 1923 2438 228 46 27 chr15 3580310 3580445 -82115309 + L1MCa LINE L1 2212 2343 -4083 1521 176 3 44 chr15 3580445 3580763 -82114991 + AluJo SINE Alu 1 305 -7 2438 228 46 27 chr15 3580763 3581814 -82113940 + L1MCa LINE L1 2343 3412 -3014 2764 182 8 45 chr15 3583215 3583861 -82111893 + MER54B LTR ERVL 1 678 -115 311 155 0 52 chr15 3586367 3586425 -82109329 - HERVL74 LTR ERVL -1048 4637 4583 * 957 144 7 0 chr15 3586407 3586560 -82109194 - HERVL74 LTR ERVL -1612 4073 3920 829 183 7 13 chr15 3586565 3586718 -82109036 - HERVL74 LTR ERVL -2043 3642 3491 1980 220 33 27 chr15 3586719 3587241 -82108513 - HERVL74 LTR ERVL -2353 3332 2808 2288 194 25 15 chr15 3587322 3587842 -82107912 - HERVL74 LTR ERVL -2873 2812 2288 1453 107 60 0 chr15 3587842 3588057 -82107697 - MER30 DNA MER1_type 0 230 3 186 103 0 0 chr15 3588278 3588307 -82107447 + (TC)n Simple_repeat Simple_repeat 2 30 0 1848 181 19 2 chr15 3589652 3590282 -82105472 + MER54B LTR ERVL 1 682 -111 284 247 158 0 chr15 3590594 3590752 -82105002 + L1MC3 LINE L1 370 552 -6055 21 57 0 0 chr15 3591600 3591635 -82104119 + AT_rich Low_complexity Low_complexity 1 35 0 7580 29 1 1 chr15 3591642 3592726 -82103028 + L1PA4 LINE L1 5072 6155 0 261 316 79 9 chr15 3593378 3593695 -82102059 + L1M4 LINE L1 4754 5092 -1054 337 332 157 9 chr15 3593741 3593964 -82101790 + MIR SINE MIR 7 262 0 280 240 70 23 chr15 3594003 3594132 -82101622 - HsTC2 DNA Tc2 -28 1870 1736 747 170 9 2 chr15 3594193 3594348 -82101406 + L1M2 LINE L1 5547 5707 -595 1567 271 42 24 chr15 3594615 3595287 -82100467 + L1MC3 LINE L1 3918 4609 -1817 6890 60 13 2 chr15 3595287 3596654 -82099100 - L1PA7 LINE L1 -2 6152 4774 1567 271 42 24 chr15 3596654 3596820 -82098934 + L1MC3 LINE L1 4609 4771 -1655 747 141 63 0 chr15 3596821 3596963 -82098791 - L1MA4A LINE L1 -260 6043 5893 1473 89 31 0 chr15 3596963 3597188 -82098566 + L1MA4A LINE L1 6066 6297 -6 2425 232 46 37 chr15 3597190 3598153 -82097601 + L1MC3 LINE L1 4762 5734 -730 1122 246 113 15 chr15 3598153 3598429 -82097325 + L1MC3 LINE L1 6134 6381 -1684 438 20 0 0 chr15 3598429 3598480 -82097274 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1122 246 113 15 chr15 3598480 3598671 -82097083 + L1MC3 LINE L1 6381 6647 -1418 1120 265 11 23 chr15 3598683 3599030 -82096724 + L1MC3 LINE L1 6792 7134 -931 * 14085 204 105 29 chr15 3599027 3603746 -82092008 + L1P3 LINE L1 5 5184 -1277 2033 135 10 0 chr15 3605820 3606116 -82089638 + AluSg SINE Alu 1 299 -11 805 193 48 70 chr15 3606244 3606514 -82089240 - LTR48B LTR ERV1 0 644 381 1474 174 189 10 chr15 3606514 3606917 -82088837 - LTR48 LTR ERV1 -312 475 1 2139 96 7 0 chr15 3607040 3607332 -82088422 + AluY SINE Alu 14 307 -4 23 33 0 0 chr15 3607356 3607386 -82088368 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 3607811 3607833 -82087921 + AT_rich Low_complexity Low_complexity 1 22 0 588 200 8 0 chr15 3607979 3608099 -82087655 - MER70A LTR ERVL -313 159 39 818 219 39 32 chr15 3608138 3608421 -82087333 - L1ME1 LINE L1 -118 6048 5764 1838 238 62 32 chr15 3608658 3608832 -82086922 - L1ME1 LINE L1 -918 5228 5061 405 0 0 0 chr15 3608832 3608877 -82086877 + (TG)n Simple_repeat Simple_repeat 1 45 0 1540 189 18 4 chr15 3608878 3609158 -82086596 - AluJb SINE Alu -28 284 1 1838 238 62 32 chr15 3609158 3609802 -82085952 - L1ME1 LINE L1 -1084 5062 4383 2513 61 3 6 chr15 3611606 3611918 -82083836 - AluY SINE Alu 0 311 1 1725 221 8 3 chr15 3612428 3612790 -82082964 - MER54B LTR ERVL -428 365 2 348 234 140 37 chr15 3612980 3613194 -82082560 - HsTC2 DNA Tc2 -256 1642 1231 259 261 14 0 chr15 3613191 3613260 -82082494 - HsTC2 DNA Tc2 -1747 151 82 * 321 318 13 26 chr15 3614243 3614397 -82081357 - MLT1E LTR MaLR -441 152 1 692 187 43 0 chr15 3614401 3614540 -82081214 - L1MD3 LINE L1 -282 7713 7569 1620 201 0 7 chr15 3614606 3614890 -82080864 + AluJb SINE Alu 1 282 -30 1351 131 0 5 chr15 3614908 3615106 -82080648 - AluSg/x SINE Alu -30 280 84 23 33 0 0 chr15 3615289 3615319 -82080435 + AT_rich Low_complexity Low_complexity 1 30 0 3262 236 87 50 chr15 3615319 3616182 -82079572 - L1MC3 LINE L1 -19 7766 6833 239 0 32 0 chr15 3616182 3616213 -82079541 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3262 236 87 50 chr15 3616213 3616724 -82079030 - L1MC3 LINE L1 -952 6833 6342 479 287 80 3 chr15 3616773 3617059 -82078695 - L1MC3 LINE L1 -1624 6161 5854 2607 212 45 150 chr15 3617068 3618138 -82077616 - L1MC3 LINE L1 -725 5453 4272 2048 150 0 0 chr15 3618138 3618432 -82077322 - AluSq SINE Alu -19 294 1 2607 212 45 150 chr15 3618432 3618482 -82077272 - L1MC3 LINE L1 -1906 4272 4218 1280 205 0 8 chr15 3618482 3618721 -82077033 - AluJo SINE Alu -75 237 1 2607 212 45 150 chr15 3618721 3618735 -82077019 - L1MC3 LINE L1 -1960 4218 4204 2169 99 0 3 chr15 3618735 3619018 -82076736 - AluSx SINE Alu -20 292 11 2607 212 45 150 chr15 3619018 3619818 -82075936 - L1MC3 LINE L1 -1974 4204 3520 359 234 213 25 chr15 3619818 3620015 -82075739 + MLT1E LTR MaLR 346 622 -2 645 226 50 13 chr15 3620016 3620255 -82075499 + L1MD3 LINE L1 7721 7968 -27 4504 184 23 21 chr15 3620259 3621264 -82074490 - L1MA7 LINE L1 -2 6289 5286 3844 98 8 6 chr15 3621264 3621774 -82073980 - MER9 LTR ERVK 0 511 1 4504 184 23 21 chr15 3621774 3621799 -82073955 - L1MA7 LINE L1 -1005 5286 5263 4200 94 25 4 chr15 3622435 3622987 -82072767 - LTR6A LTR ERV1 0 564 1 3706 226 79 21 chr15 3624024 3624874 -82070880 + MER54A LTR ERVL 3 901 0 1027 247 87 31 chr15 3625172 3625630 -82070124 + HsTC2 DNA Tc2 1216 1875 -23 234 319 21 11 chr15 3625714 3625808 -82069946 - MIR SINE MIR -36 226 132 22 80 0 0 chr15 3626086 3626136 -82069618 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3627627 3627925 -82067829 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3627940 3628296 -82067458 - MER47A DNA MER2_type -1 365 4 322 256 12 0 chr15 3628703 3628789 -82066965 - L1MEc LINE L1 -6210 186 100 2330 95 0 3 chr15 3628846 3629141 -82066613 + AluSc SINE Alu 1 294 -15 2495 171 38 71 chr15 3629405 3629703 -82066051 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3629703 3629999 -82065755 + AluSp SINE Alu 1 297 -16 2495 171 38 71 chr15 3629999 3630188 -82065566 - MER7C DNA MER2_type -2732 296 133 1783 156 3 59 chr15 3630188 3630508 -82065246 + AluSx SINE Alu 1 302 -10 2495 171 38 71 chr15 3630508 3630626 -82065128 - MER7C DNA MER2_type -2895 133 13 2054 93 14 4 chr15 3630864 3631143 -82064611 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3631156 3631297 -82064457 - HsTC2 DNA Tc2 -344 1554 1231 2356 78 0 10 chr15 3632290 3632597 -82063157 + AluY SINE Alu 2 305 -6 1941 285 32 22 chr15 3633430 3633512 -82062242 - L1MCa LINE L1 -3014 3412 3332 198 0 0 0 chr15 3633512 3633534 -82062220 + (TA)n Simple_repeat Simple_repeat 2 23 0 2390 54 40 0 chr15 3633535 3633831 -82061923 - AluSg SINE Alu 0 310 3 1941 285 32 22 chr15 3633831 3634199 -82061555 - L1MCa LINE L1 -3094 3332 2969 2892 88 3 0 chr15 3634199 3634553 -82061201 + THE1A LTR MaLR 1 355 0 1941 285 32 22 chr15 3634553 3634920 -82060834 - L1MCa LINE L1 -3457 2969 2584 1111 108 0 7 chr15 3634921 3635069 -82060685 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3635125 3635244 -82060510 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3635242 3635293 -82060461 - L1ME LINE L1 -706 5740 5690 * 1399 141 49 20 chr15 3635280 3635373 -82060381 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3635373 3635682 -82060072 - AluSx SINE Alu 0 314 1 1399 141 49 20 chr15 3635682 3635932 -82059822 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3635932 3636031 -82059723 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3636031 3636055 -82059699 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3636055 3636074 -82059680 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3636079 3636212 -82059542 - MER41E LTR ERV1 -335 177 23 5565 228 77 43 chr15 3636649 3636806 -82058948 - L1MC3 LINE L1 -6 7779 7629 2086 117 0 3 chr15 3636806 3637123 -82058631 - AluSx SINE Alu 0 316 1 5565 228 77 43 chr15 3637123 3638823 -82056931 - L1MC3 LINE L1 -156 7629 5858 2011 132 13 7 chr15 3638836 3639140 -82056614 - AluSq SINE Alu -7 306 1 1428 251 71 18 chr15 3639141 3639778 -82055976 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3639778 3640126 -82055628 - MER52A LTR ERV1 0 1755 1410 1073 282 8 56 chr15 3640149 3640761 -82054993 - MER52A LTR ERV1 -570 1185 464 1138 184 41 33 chr15 3640761 3641006 -82054748 - LTR12 LTR ERV1 -251 463 217 1040 244 87 31 chr15 3641994 3642452 -82053302 + HsTC2 DNA Tc2 1216 1875 -23 251 267 61 61 chr15 3642527 3642658 -82053096 - MIR SINE MIR -36 226 96 22 80 0 0 chr15 3642899 3642949 -82052805 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3644439 3644737 -82051017 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3644752 3645108 -82050646 - MER47A DNA MER2_type -1 365 4 513 268 14 0 chr15 3645463 3645601 -82050153 - L1MEc LINE L1 -6157 239 100 2365 95 0 0 chr15 3645658 3645952 -82049802 + AluSc SINE Alu 1 294 -15 2511 170 38 71 chr15 3646216 3646514 -82049240 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3646514 3646810 -82048944 + AluSp SINE Alu 1 297 -16 2511 170 38 71 chr15 3646810 3646999 -82048755 - MER7C DNA MER2_type -2732 296 133 1845 153 0 59 chr15 3646999 3647319 -82048435 + AluSx SINE Alu 1 301 -11 2511 170 38 71 chr15 3647319 3647437 -82048317 - MER7C DNA MER2_type -2895 133 13 2292 75 7 0 chr15 3647675 3647955 -82047799 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3647967 3648108 -82047646 - HsTC2 DNA Tc2 -344 1554 1231 2352 84 0 10 chr15 3649101 3649412 -82046342 + AluY SINE Alu 2 309 -2 1818 279 27 43 chr15 3650246 3650351 -82045403 - L1MCa LINE L1 -3014 3412 3307 2306 62 41 0 chr15 3650351 3650643 -82045111 - AluSg SINE Alu -4 306 3 1818 279 27 43 chr15 3650643 3651011 -82044743 - L1MCa LINE L1 -3119 3307 2955 2931 82 3 0 chr15 3651011 3651365 -82044389 + THE1A LTR MaLR 1 355 0 1818 279 27 43 chr15 3651365 3651732 -82044022 - L1MCa LINE L1 -3471 2955 2584 1111 108 0 7 chr15 3651733 3651881 -82043873 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3651937 3652056 -82043698 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3652054 3652105 -82043649 - L1ME LINE L1 -706 5740 5690 * 1401 138 45 20 chr15 3652092 3652185 -82043569 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3652185 3652494 -82043260 - AluSx SINE Alu 0 314 1 1401 138 45 20 chr15 3652494 3652745 -82043009 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3652745 3652844 -82042910 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3652844 3652868 -82042886 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3652868 3652887 -82042867 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3652892 3653025 -82042729 - MER41E LTR ERV1 -335 177 23 5631 230 77 40 chr15 3653462 3653616 -82042138 - L1MC3 LINE L1 -6 7779 7632 2086 117 0 3 chr15 3653616 3653948 -82041806 - AluSx SINE Alu 0 331 1 5631 230 77 40 chr15 3653948 3655647 -82040107 - L1MC3 LINE L1 -153 7632 5858 2138 133 7 0 chr15 3655660 3655962 -82039792 - AluSx SINE Alu -8 304 1 1438 252 68 18 chr15 3655963 3656602 -82039152 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3656602 3656950 -82038804 - MER52A LTR ERV1 0 1755 1410 345 244 22 0 chr15 3656973 3657063 -82038691 - MER52A LTR ERV1 -570 1185 1094 1050 296 6 66 chr15 3657068 3657585 -82038169 - MER52A LTR ERV1 -806 949 464 2225 139 88 25 chr15 3657585 3657981 -82037773 - LTR12 LTR ERV1 -251 463 43 553 275 119 24 chr15 3657981 3658382 -82037372 - MER52A LTR ERV1 -635 643 29 601 199 72 48 chr15 3658396 3658562 -82037192 - L1MC3 LINE L1 -1361 4785 4616 834 224 0 0 chr15 3659868 3660043 -82035711 - AluJb SINE Alu 0 306 132 744 278 68 23 chr15 3660405 3660714 -82035040 + HsTC2 DNA Tc2 1227 1725 -173 902 123 71 0 chr15 3660716 3660871 -82034883 - L1M2 LINE L1 -618 5673 5508 346 168 106 9 chr15 3660896 3661009 -82034745 + HsTC2 DNA Tc2 1754 1877 -21 358 290 172 11 chr15 3661071 3661257 -82034497 - MIR SINE MIR -40 222 7 383 280 84 84 chr15 3661292 3661388 -82034366 - L1M4 LINE L1 -1050 5096 5001 2000 125 18 0 chr15 3661388 3661667 -82034087 + AluSg SINE Alu 1 284 -26 383 280 84 84 chr15 3661667 3661913 -82033841 - L1M4 LINE L1 -1144 5002 4754 198 0 0 0 chr15 3662044 3662066 -82033688 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4202 245 41 38 chr15 3663799 3665146 -82030608 + L1PA13 LINE L1 1 1409 -5378 4315 135 0 5 chr15 3665149 3665778 -82029976 + L1PA15 LINE L1 5533 6158 -7 888 148 8 0 chr15 3666411 3666539 -82029215 + AluSq/x SINE Alu 5 133 -179 1970 141 3 0 chr15 3666543 3666826 -82028928 + AluSg SINE Alu 2 285 -25 216 0 0 0 chr15 3666899 3666923 -82028831 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 488 329 78 13 chr15 3667162 3667393 -82028361 - L1MEc LINE L1 -6089 307 62 551 231 111 53 chr15 3667772 3667997 -82027757 - HsTC2 DNA Tc2 -246 1652 1239 233 310 69 45 chr15 3668517 3668807 -82026947 - L2 LINE L2 -62 3210 2914 246 226 0 0 chr15 3669022 3669075 -82026679 + L1MCa LINE L1 2074 2126 -4300 701 185 15 0 chr15 3669120 3669255 -82026499 + L1MCa LINE L1 2080 2216 -4210 366 342 76 11 chr15 3669318 3669502 -82026252 - MLT1E LTR MaLR -330 263 68 2817 218 11 44 chr15 3669506 3670122 -82025632 - L1MA7 LINE L1 -353 5938 5303 1633 194 11 0 chr15 3670122 3670406 -82025348 - AluJo SINE Alu -25 287 1 2239 93 27 0 chr15 3670416 3670716 -82025038 - AluSx SINE Alu -4 308 1 2817 218 11 44 chr15 3670716 3670785 -82024969 - L1MA7 LINE L1 -997 5294 5263 685 48 0 0 chr15 3671259 3671343 -82024411 + MSTB LTR MaLR 1 84 -342 2104 176 72 17 chr15 3671366 3671770 -82023984 + MSTB LTR MaLR 1 426 0 2304 95 0 25 chr15 3672637 3672954 -82022800 + AluSc SINE Alu 1 309 0 2301 101 3 0 chr15 3673732 3674030 -82021724 + AluSp SINE Alu 1 299 -14 3208 239 97 3 chr15 3674508 3675272 -82020482 + MER54A LTR ERVL 59 894 -7 2054 94 63 23 chr15 3675396 3675695 -82020059 + AluSp SINE Alu 1 311 -2 1376 200 28 39 chr15 3675722 3676007 -82019747 + AluJo SINE Alu 1 282 -30 2256 211 33 7 chr15 3676147 3676568 -82019186 + MSTB1 LTR MaLR 1 432 0 504 258 102 27 chr15 3676660 3676885 -82018869 + HsTC2 DNA Tc2 1235 1652 -246 1375 133 0 0 chr15 3676894 3677082 -82018672 - AluSg/x SINE Alu -12 298 111 2435 67 0 10 chr15 3677083 3677381 -82018373 - AluY SINE Alu -11 300 6 266 315 80 24 chr15 3677385 3677598 -82018156 + HsTC2 DNA Tc2 1649 1873 -25 191 370 10 10 chr15 3677651 3677751 -82018003 - MIR SINE MIR -22 240 141 241 289 70 30 chr15 3677872 3678073 -82017681 - L1M4 LINE L1 -1049 5097 4889 311 144 0 178 chr15 3680482 3680572 -82015182 - MER47A DNA MER2_type 0 366 291 1762 166 14 0 chr15 3680573 3680869 -82014885 - MER47A DNA MER2_type -44 322 23 302 333 30 0 chr15 3681316 3681481 -82014273 - L1MEc LINE L1 -6137 259 90 2409 197 36 60 chr15 3681792 3682219 -82013535 - MER7C DNA MER2_type -2427 601 165 2435 65 0 7 chr15 3682219 3682525 -82013229 + AluY SINE Alu 1 304 -7 2409 197 36 60 chr15 3682525 3682572 -82013182 - MER7C DNA MER2_type -2863 165 118 2353 95 0 0 chr15 3682572 3682867 -82012887 + AluSg SINE Alu 1 295 -15 2409 197 36 60 chr15 3682867 3683005 -82012749 - MER7C DNA MER2_type -2910 118 3 528 159 86 73 chr15 3683199 3683350 -82012404 - HsTC2 DNA Tc2 -332 1566 1238 889 77 0 0 chr15 3683444 3683561 -82012193 + AluY SINE Alu 195 311 0 629 206 0 0 chr15 3683609 3683716 -82012038 + FAM SINE Alu 58 164 -21 2056 270 45 26 chr15 3685441 3686310 -82009444 - L1M4 LINE L1 -3014 3132 2248 3311 205 35 42 chr15 3686379 3687358 -82008396 - L1MA8 LINE L1 -47 6313 2235 241 163 0 0 chr15 3687358 3687401 -82008353 + LTR30 LTR ERV1 1 43 -679 410 172 49 93 chr15 3687401 3687595 -82008159 + LTR12 LTR ERV1 44 289 -425 269 210 16 0 chr15 3687595 3687657 -82008097 + LTR30 LTR ERV1 556 618 -104 2576 39 3 7 chr15 3687809 3688118 -82007636 + AluY SINE Alu 1 308 -3 216 309 147 0 chr15 3688317 3688385 -82007369 + L2 LINE L2 3192 3269 -44 904 247 63 28 chr15 3688437 3688692 -82007062 - LTR48B LTR ERV1 0 644 381 1189 178 230 57 chr15 3688692 3688907 -82006847 - LTR48 LTR ERV1 -312 475 298 2269 109 0 0 chr15 3688907 3689209 -82006545 - AluSg SINE Alu -8 302 1 1189 178 230 57 chr15 3689209 3689398 -82006356 - LTR48 LTR ERV1 -489 298 1 831 202 98 38 chr15 3689520 3689703 -82006051 + AluJo SINE Alu 85 278 -34 420 20 0 0 chr15 3689703 3689752 -82006002 + (TC)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr15 3689751 3689779 -82005975 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1137 112 12 0 chr15 3689779 3689940 -82005814 + AluSg/x SINE Alu 135 297 -13 186 0 28 56 chr15 3689943 3689979 -82005775 + (TA)n Simple_repeat Simple_repeat 1 35 0 48 95 0 0 chr15 3691679 3691763 -82003991 + AT_rich Low_complexity Low_complexity 1 84 0 719 94 0 28 chr15 3692770 3692876 -82002878 - FLAM_C SINE Alu -4 139 37 1312 184 58 41 chr15 3692921 3693263 -82002491 - MLT1B LTR MaLR 0 390 43 1390 205 85 53 chr15 3693264 3693366 -82002388 - MER39 LTR ERV1 0 707 610 2139 112 0 3 chr15 3693366 3693660 -82002094 - AluSq SINE Alu -20 293 1 1390 205 85 53 chr15 3693660 3694038 -82001716 - MER39 LTR ERV1 -97 610 4 2459 54 0 7 chr15 3694318 3694616 -82001138 - AluY SINE Alu -15 296 1 2175 113 7 0 chr15 3694678 3694970 -82000784 - AluSx SINE Alu -18 294 1 2379 85 0 3 chr15 3694975 3695282 -82000472 - AluY SINE Alu -4 307 2 287 313 0 0 chr15 3695318 3695398 -82000356 - L1ME1 LINE L1 -30 6136 6057 10312 198 36 10 chr15 3695399 3697024 -81998730 - MER70B-int LTR ERVL -1326 3697 2008 2342 109 0 0 chr15 3697024 3697328 -81998426 + AluSq SINE Alu 1 304 -9 10312 198 36 10 chr15 3697328 3697727 -81998027 - MER70B-int LTR ERVL -3015 2008 1621 5643 189 51 14 chr15 3697737 3697798 -81997956 - MER70B-int LTR ERVL -3867 1156 1099 1984 125 21 0 chr15 3697798 3698087 -81997667 - AluSg SINE Alu -15 295 1 5643 189 51 14 chr15 3698087 3699140 -81996614 - MER70B-int LTR ERVL -3924 1099 1 2020 225 19 16 chr15 3699144 3699629 -81996125 - MER70B LTR ERVL -2 576 91 797 239 0 6 chr15 3699630 3699789 -81995965 - MER70B LTR ERVL -420 158 1 512 256 211 0 chr15 3699792 3700015 -81995739 - L1ME1 LINE L1 -127 6039 5770 818 132 8 0 chr15 3700030 3700151 -81995603 - AluSp/q SINE Alu -21 292 171 23 33 0 0 chr15 3700157 3700187 -81995567 + AT_rich Low_complexity Low_complexity 1 30 0 773 182 0 198 chr15 3700236 3700314 -81995440 - L1ME1 LINE L1 -493 5671 5572 1903 144 3 33 chr15 3700314 3700449 -81995305 + AluSx SINE Alu 1 138 -174 2145 106 0 14 chr15 3700449 3700732 -81995022 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr15 3700732 3700770 -81994984 + (CA)n Simple_repeat Simple_repeat 1 38 0 1903 144 3 33 chr15 3700770 3700939 -81994815 + AluSx SINE Alu 136 297 -15 773 182 0 198 chr15 3700939 3701062 -81994692 - L1ME1 LINE L1 -592 5572 5559 311 59 0 20 chr15 3701062 3701113 -81994641 + (TG)n Simple_repeat Simple_repeat 1 50 0 773 182 0 198 chr15 3701113 3701327 -81994427 - L1ME1 LINE L1 -605 5559 5285 832 259 55 64 chr15 3701378 3701476 -81994278 - L1ME1 LINE L1 -917 5229 5132 2250 110 3 0 chr15 3701476 3701776 -81993978 - AluSx SINE Alu -11 301 1 832 259 55 64 chr15 3701776 3702132 -81993622 - L1ME1 LINE L1 -1014 5132 4779 203 224 0 20 chr15 3702132 3702181 -81993573 + (TA)n Simple_repeat Simple_repeat 2 49 0 1197 248 48 48 chr15 3702184 3702269 -81993485 - L1ME1 LINE L1 -1330 4816 4732 2198 96 3 0 chr15 3702269 3702575 -81993179 + AluSp SINE Alu 1 307 0 1197 248 48 48 chr15 3702575 3702755 -81992999 - L1ME1 LINE L1 -1414 4732 4553 2262 101 0 7 chr15 3702755 3703051 -81992703 + AluSg SINE Alu 1 294 -16 1197 248 48 48 chr15 3703051 3703283 -81992471 - L1ME1 LINE L1 -1592 4554 4317 2144 110 7 0 chr15 3704311 3704603 -81991151 + AluSx SINE Alu 1 294 -18 453 50 0 0 chr15 3705166 3705226 -81990528 + (CGGGGG)n Simple_repeat Simple_repeat 2 61 0 2057 82 0 94 chr15 3705841 3706183 -81989571 - AluSc SINE Alu 0 309 1 1695 233 22 0 chr15 3706307 3706663 -81989091 - MER54B LTR ERVL -429 364 1 738 230 146 42 chr15 3706797 3707132 -81988622 - HsTC2 DNA Tc2 -122 1776 1231 278 259 0 0 chr15 3707128 3707186 -81988568 - HsTC2 DNA Tc2 -1756 142 85 * 22 0 0 0 chr15 3707197 3707219 -81988535 + AT_rich Low_complexity Low_complexity 1 22 0 2186 83 10 20 chr15 3707266 3707567 -81988187 - AluSq SINE Alu -15 298 1 1164 178 18 4 chr15 3707862 3708087 -81987667 - AluJb SINE Alu -1 311 84 404 211 16 24 chr15 3709211 3709334 -81986420 - L1ME1 LINE L1 -2973 3173 3052 681 219 7 0 chr15 3709367 3709504 -81986250 - L1MD3 LINE L1 -282 7713 7576 1430 213 3 56 chr15 3709588 3709912 -81985842 + AluJb SINE Alu 1 307 -5 2651 221 126 12 chr15 3710008 3710352 -81985402 - L1MC3 LINE L1 -11 7774 7471 2405 71 3 0 chr15 3710352 3710646 -81985108 - AluY SINE Alu -16 295 1 2651 221 126 12 chr15 3710646 3711100 -81984654 - L1MC3 LINE L1 -314 7471 6885 646 193 39 8 chr15 3711105 3711252 -81984502 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 3711602 3711677 -81984077 + MER54A LTR ERVL 1 83 -818 1932 129 20 14 chr15 3711677 3711972 -81983782 + AluSx SINE Alu 1 297 -15 439 253 0 108 chr15 3711972 3712090 -81983664 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 3712214 3712297 -81983457 - MIR SINE MIR -39 223 141 2240 118 0 7 chr15 3712460 3712766 -81982988 + AluSx SINE Alu 1 304 -8 243 274 154 30 chr15 3712822 3713056 -81982698 - L1 LINE L1 -1125 5021 4759 3821 135 47 72 chr15 3714652 3715361 -81980393 - LTR8 LTR ERV1 0 691 1 1869 124 11 28 chr15 3715468 3715750 -81980004 + AluSg SINE Alu 1 277 -33 3529 122 16 2 chr15 3715750 3716252 -81979502 + LTR10D LTR ERV1 4 512 -1 3954 96 49 2 chr15 3716547 3717076 -81978678 - MER41A LTR ERV1 0 554 1 28 48 0 0 chr15 3717159 3717201 -81978553 + AT_rich Low_complexity Low_complexity 1 42 0 1751 181 47 0 chr15 3717445 3717788 -81977966 - MER47A DNA MER2_type 0 366 8 771 153 0 0 chr15 3717970 3718081 -81977673 + AluSg/x SINE Alu 189 299 -10 3300 173 22 10 chr15 3718103 3718697 -81977057 - MER7C DNA MER2_type 0 602 2 266 238 38 76 chr15 3718903 3719008 -81976746 - HsTC2 DNA Tc2 -345 1553 1277 257 246 98 0 chr15 3719039 3719100 -81976654 - HsTC2 DNA Tc2 -1747 151 85 322 245 19 9 chr15 3720845 3720951 -81974803 - L1 LINE L1 -3014 3132 3026 35 0 0 0 chr15 3720951 3720986 -81974768 + AT_rich Low_complexity Low_complexity 1 35 0 2132 98 0 7 chr15 3720986 3721281 -81974473 - AluY SINE Alu -18 293 1 2320 110 7 0 chr15 3721285 3721593 -81974161 - AluSq SINE Alu -3 310 1 594 232 40 27 chr15 3721630 3721854 -81973900 - L1 LINE L1 -3138 3008 2782 240 139 0 0 chr15 3721854 3721897 -81973857 - MER49 LTR ERV1 0 923 881 * 4141 158 27 22 chr15 3721893 3721996 -81973758 - MER49 LTR ERV1 -206 717 616 2291 113 0 0 chr15 3721996 3722296 -81973458 - AluSx SINE Alu -12 300 1 4141 158 27 22 chr15 3722296 3722902 -81972852 - MER49 LTR ERV1 -307 616 5 840 246 86 4 chr15 3722907 3723187 -81972567 - L1 LINE L1 -3588 2558 2256 694 203 22 11 chr15 3723190 3723372 -81972382 - L1MA8 LINE L1 -2 6569 6386 1034 141 7 0 chr15 3723372 3723521 -81972233 - AluJb SINE Alu -34 278 129 1776 200 44 69 chr15 3723543 3724328 -81971426 - L1MA8 LINE L1 -192 6379 5576 2553 47 0 10 chr15 3724328 3724625 -81971129 - AluY SINE Alu -17 294 1 1776 200 44 69 chr15 3724625 3724934 -81970820 - L1MA8 LINE L1 -995 5576 2213 402 189 79 0 chr15 3724934 3725061 -81970693 + L1MCa LINE L1 1918 2054 -4372 239 191 0 0 chr15 3725061 3725108 -81970646 + LTR66 LTR ERVL 393 439 -171 548 264 7 0 chr15 3725114 3725262 -81970492 + L1MCa LINE L1 2052 2200 -4226 834 265 118 29 chr15 3725268 3725581 -81970173 - MLT1E LTR MaLR -248 345 5 527 273 7 0 chr15 3725590 3725733 -81970021 - L1MD3 LINE L1 -283 7712 7569 1628 153 3 40 chr15 3725806 3726106 -81969648 + AluJb SINE Alu 1 289 -23 5236 243 57 58 chr15 3726176 3727815 -81967939 - L1MC3 LINE L1 0 7785 6146 1946 136 0 34 chr15 3727815 3728145 -81967609 - AluSx SINE Alu 0 320 1 5236 243 57 58 chr15 3728145 3728434 -81967320 - L1MC3 LINE L1 -1639 6146 5858 660 234 47 0 chr15 3728437 3728658 -81967096 - L1MC3 LINE L1 -720 5454 5225 2417 84 3 0 chr15 3728658 3728957 -81966797 - AluY SINE Alu -11 300 1 2516 67 13 0 chr15 3729244 3729544 -81966210 + AluY SINE Alu 2 305 -6 328 325 26 0 chr15 3729748 3729865 -81965889 + HsTC2 DNA Tc2 35 154 -1744 * 1008 233 89 28 chr15 3729863 3730300 -81965454 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3730371 3730479 -81965275 - MIR SINE MIR -31 231 119 723 200 23 0 chr15 3730853 3730983 -81964771 + AluJo SINE Alu 3 135 -177 2429 106 0 0 chr15 3730986 3731297 -81964457 + AluSx SINE Alu 1 311 -1 2260 110 3 0 chr15 3731553 3731852 -81963902 + AluSx SINE Alu 3 302 -10 1933 81 84 0 chr15 3732760 3732879 -81962875 + AluSx SINE Alu 1 109 -203 273 29 0 0 chr15 3732879 3732913 -81962841 + (CA)n Simple_repeat Simple_repeat 2 35 0 1933 81 84 0 chr15 3732913 3733066 -81962688 + AluSx SINE Alu 109 296 -16 39 22 0 0 chr15 3734223 3734269 -81961485 + AT_rich Low_complexity Low_complexity 1 46 0 2173 112 3 10 chr15 3734362 3734674 -81961080 + AluSx SINE Alu 1 310 -2 653 235 56 34 chr15 3734888 3735067 -81960687 + MER58A DNA MER1_type 16 198 -26 231 274 32 32 chr15 3735703 3735798 -81959956 - L1ME LINE L1 -5928 142 48 695 165 0 0 chr15 3735965 3736074 -81959680 - AluSg/x SINE Alu -21 291 183 682 140 0 0 chr15 3736076 3736176 -81959578 - AluJo/FLAM SINE Alu -199 113 14 2121 107 0 31 chr15 3736453 3736743 -81959011 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr15 3736743 3736775 -81958979 + (GA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 3737422 3737444 -81958310 + AT_rich Low_complexity Low_complexity 1 22 0 2064 124 18 72 chr15 3737628 3737699 -81958055 - MER47A DNA MER2_type -1957 366 293 2284 98 3 0 chr15 3737699 3737984 -81957770 + AluSg SINE Alu 1 286 -24 2064 124 18 72 chr15 3737984 3738299 -81957455 - MER47A DNA MER2_type -2030 293 1 1975 153 20 0 chr15 3738881 3739175 -81956579 + AluSx SINE Alu 1 300 -12 1622 148 0 104 chr15 3739180 3739517 -81956237 + AluJb SINE Alu 1 302 -10 231 250 172 39 chr15 3739815 3739969 -81955785 - L1MC/D LINE L1 -2004 5804 5615 3161 146 31 29 chr15 3739969 3740525 -81955229 - MER41D LTR ERV1 0 557 1 231 250 172 39 chr15 3740525 3740574 -81955180 - L1MC/D LINE L1 -2193 5615 5574 381 58 0 0 chr15 3740880 3740932 -81954822 + (TG)n Simple_repeat Simple_repeat 1 52 0 2676 155 19 25 chr15 3741194 3741678 -81954076 + MER31A LTR ERV1 5 485 0 2399 93 0 0 chr15 3742309 3742610 -81953144 - AluSx SINE Alu -11 301 1 431 78 62 0 chr15 3742688 3742752 -81953002 + Alu SINE Alu 5 72 -237 460 111 12 12 chr15 3743172 3743253 -81952501 + L1MB3 LINE L1 6100 6180 -3 2189 119 3 0 chr15 3743275 3743569 -81952185 - AluSg SINE Alu -15 295 1 2363 107 0 0 chr15 3744073 3744381 -81951373 - AluSx SINE Alu -4 308 1 2466 75 0 10 chr15 3744463 3744768 -81950986 - AluY SINE Alu -9 302 1 2343 104 7 0 chr15 3744931 3745230 -81950524 + AluSx SINE Alu 1 301 -11 1163 228 134 37 chr15 3745231 3745558 -81950196 + MER39 LTR ERV1 19 313 -394 2352 99 0 13 chr15 3745558 3745872 -81949882 + AluSg SINE Alu 1 310 0 1163 228 134 37 chr15 3745872 3746006 -81949748 + MER39 LTR ERV1 313 662 -45 1642 177 7 0 chr15 3746080 3746357 -81949397 - AluSx SINE Alu -16 296 18 3577 194 62 90 chr15 3746420 3746600 -81949154 - LTR49-int LTR ERV1 -3587 1349 1165 2247 113 0 0 chr15 3746600 3746900 -81948854 - AluSx SINE Alu -11 301 2 3577 194 62 90 chr15 3746900 3747661 -81948093 - LTR49-int LTR ERV1 -3771 1165 440 1816 113 4 4 chr15 3747661 3747928 -81947826 + AluSx SINE Alu 44 310 0 3577 194 62 90 chr15 3747928 3748073 -81947681 - LTR49-int LTR ERV1 -4496 440 292 2329 109 3 0 chr15 3748090 3748420 -81947334 + AluSx SINE Alu 1 312 0 355 228 51 112 chr15 3748427 3748498 -81947256 - LTR49-int LTR ERV1 -4661 1670 1596 1934 143 0 3 chr15 3748498 3748784 -81946970 + AluJo SINE Alu 1 285 -27 355 228 51 112 chr15 3748784 3748909 -81946845 - LTR49-int LTR ERV1 -4735 1596 1486 317 226 59 39 chr15 3748910 3749012 -81946742 + U13 snRNA snRNA 1 104 0 208 217 14 58 chr15 3749016 3749085 -81946669 + A-rich Low_complexity Low_complexity 5 70 0 392 182 74 74 chr15 3749086 3749207 -81946547 - LTR49-int LTR ERV1 -4836 1495 1375 2541 59 0 3 chr15 3749378 3749682 -81946072 - AluY SINE Alu -8 303 1 848 231 68 57 chr15 3750025 3750438 -81945316 - MER39 LTR ERV1 -27 650 269 385 283 0 0 chr15 3750422 3750528 -81945226 - MER34 LTR ERV1 -428 114 9 * 276 53 0 0 chr15 3750556 3750594 -81945160 + (CA)n Simple_repeat Simple_repeat 2 39 0 927 230 67 60 chr15 3751420 3751636 -81944118 + MLT1E1 LTR MaLR 54 267 -326 1866 79 0 17 chr15 3751636 3751876 -81943878 + AluY SINE Alu 55 290 -21 927 230 67 60 chr15 3751876 3752029 -81943725 + MLT1E1 LTR MaLR 267 417 -176 1727 190 7 3 chr15 3752029 3752329 -81943425 + AluJb SINE Alu 7 307 -5 927 230 67 60 chr15 3752329 3752458 -81943296 + MLT1E1 LTR MaLR 417 544 -49 1622 191 11 4 chr15 3752458 3752735 -81943019 + AluJo SINE Alu 1 279 -33 2210 137 34 0 chr15 3752735 3753086 -81942668 + THE1B LTR MaLR 2 364 0 927 230 67 60 chr15 3753086 3753120 -81942634 + MLT1E1 LTR MaLR 543 585 -8 215 59 0 29 chr15 3753317 3753351 -81942403 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2282 86 3 0 chr15 3753461 3753751 -81942003 + AluSc SINE Alu 1 291 -18 2039 93 117 11 chr15 3753899 3754345 -81941409 - LTR14B LTR ERVK 0 608 1 865 264 117 39 chr15 3754465 3754901 -81940853 + LTR41 LTR ERVL 1 470 -303 233 227 0 53 chr15 3754958 3755033 -81940721 + LTR41 LTR ERVL 693 763 -10 282 261 67 52 chr15 3755352 3755486 -81940268 + ERVL LTR ERVL 351 486 -5278 1481 176 14 21 chr15 3755978 3756267 -81939487 + AluJb SINE Alu 12 298 -14 318 177 0 0 chr15 3756271 3756333 -81939421 - L1 LINE L1 -1676 4470 4409 334 232 21 21 chr15 3756466 3756561 -81939193 + ERVL LTR ERVL 1548 1642 -3843 895 260 92 0 chr15 3756632 3756859 -81938895 + MER82 DNA MER2_type 405 652 -1 4983 73 52 9 chr15 3757637 3758297 -81937457 - LTR12 LTR ERV1 0 688 1 198 0 0 0 chr15 3758574 3758596 -81937158 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1748 159 3 20 chr15 3758905 3759206 -81936548 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr15 3759272 3759293 -81936461 + AT_rich Low_complexity Low_complexity 1 21 0 2325 112 0 0 chr15 3759526 3759838 -81935916 + AluSx SINE Alu 1 312 0 1881 100 126 0 chr15 3759848 3760119 -81935635 + AluSx SINE Alu 1 305 -7 1228 127 0 0 chr15 3760119 3760285 -81935469 + AluSg/x SINE Alu 134 299 -13 2120 98 0 4 chr15 3760417 3760692 -81935062 + AluSx SINE Alu 30 303 -9 1172 282 59 16 chr15 3760797 3761513 -81934241 - L1MEc LINE L1 -4837 1276 673 5638 117 6 12 chr15 3761514 3762372 -81933382 + L1PA13 LINE L1 5307 6159 -4 544 228 0 8 chr15 3762620 3762747 -81933007 + AluY SINE Alu 180 305 -6 328 325 26 0 chr15 3762952 3763069 -81932685 + HsTC2 DNA Tc2 35 154 -1744 * 962 238 97 25 chr15 3763067 3763500 -81932254 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3763571 3763679 -81932075 - MIR SINE MIR -31 231 119 756 166 30 4 chr15 3764257 3764421 -81931333 - MSTA LTR MaLR -208 167 1 2076 130 7 0 chr15 3764521 3764821 -81930933 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 3764899 3764929 -81930825 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 837 181 87 0 chr15 3764936 3765085 -81930669 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 3765085 3765108 -81930646 + AT_rich Low_complexity Low_complexity 1 23 0 2585 172 59 12 chr15 3765170 3765676 -81930078 - L1MB3 LINE L1 -2 6181 5652 453 206 18 100 chr15 3765676 3765846 -81929908 - AluSg/x SINE Alu -19 290 135 495 175 0 0 chr15 3766257 3766377 -81929377 + G-rich Low_complexity Low_complexity 1 120 0 1209 228 54 33 chr15 3766532 3766631 -81929123 + MER58B DNA MER1_type 1 96 -2324 2375 97 3 0 chr15 3766631 3766931 -81928823 + AluSx SINE Alu 1 301 -11 1209 228 54 33 chr15 3766931 3767165 -81928589 + MER58B DNA MER1_type 96 341 0 1706 174 14 3 chr15 3767188 3767470 -81928284 - AluSx SINE Alu -27 285 1 1898 146 3 3 chr15 3767604 3767898 -81927856 + AluSx SINE Alu 2 295 -17 2235 102 10 3 chr15 3768450 3768743 -81927011 + AluSg SINE Alu 1 295 -15 1200 143 104 17 chr15 3769098 3769328 -81926426 - MSTA LTR MaLR 0 428 179 2183 127 3 0 chr15 3769460 3769760 -81925994 + AluSq SINE Alu 1 301 -12 1665 197 14 57 chr15 3769806 3769876 -81925878 + MER67A LTR ERV1 1 72 -471 2209 110 3 0 chr15 3769876 3770175 -81925579 + AluSq SINE Alu 2 301 -12 1665 197 14 57 chr15 3770175 3770526 -81925228 + MER67A LTR ERV1 72 404 -139 1803 149 6 19 chr15 3770544 3770860 -81924894 - AluSx SINE Alu 0 312 1 453 158 13 0 chr15 3770862 3770938 -81924816 - FLAM_A SINE Alu -34 108 32 868 182 7 7 chr15 3770965 3771119 -81924635 + MER67A LTR ERV1 390 543 0 1584 119 61 61 chr15 3771350 3771496 -81924258 - AluJb SINE Alu -17 295 147 2158 102 3 33 chr15 3771496 3771801 -81923953 - AluSg SINE Alu -12 298 3 1584 119 61 61 chr15 3771801 3771931 -81923823 - AluJb SINE Alu -164 148 19 24 41 0 20 chr15 3772213 3772250 -81923504 + AT_rich Low_complexity Low_complexity 1 38 -10 1476 117 167 8 chr15 3772250 3772507 -81923247 - AluSc SINE Alu -1 298 1 24 41 0 20 chr15 3772507 3772518 -81923236 + AT_rich Low_complexity Low_complexity 38 48 0 831 244 151 26 chr15 3773109 3773454 -81922300 + L1MC4 LINE L1 6493 6880 -1162 1360 196 109 7 chr15 3773502 3773778 -81921976 + AluJo SINE Alu 1 304 -8 358 175 0 0 chr15 3773778 3773835 -81921919 + L1MA5A LINE L1 6043 6099 -198 3323 137 61 4 chr15 3773870 3774425 -81921329 - L1MA5 LINE L1 -319 5981 5395 437 312 12 0 chr15 3774475 3774645 -81921109 + L1MC4 LINE L1 7454 7625 -417 231 36 0 0 chr15 3774954 3774982 -81920772 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 312 27 0 0 chr15 3774981 3775018 -81920736 + (GA)n Simple_repeat Simple_repeat 2 38 0 784 197 98 38 chr15 3775018 3775201 -81920553 - AluJo SINE Alu -34 278 85 1101 181 236 57 chr15 3775323 3775510 -81920244 + LTR48 LTR ERV1 1 153 -634 2255 106 3 3 chr15 3775510 3775812 -81919942 + AluSg SINE Alu 1 302 -8 1101 181 236 57 chr15 3775812 3776027 -81919727 + LTR48 LTR ERV1 153 475 -312 924 239 63 28 chr15 3776027 3776282 -81919472 + LTR48B LTR ERV1 381 644 0 183 309 147 0 chr15 3776334 3776402 -81919352 - L2 LINE L2 -44 3269 3192 2480 85 0 0 chr15 3776601 3776908 -81918846 - AluSg SINE Alu -3 307 1 1590 242 57 11 chr15 3776908 3777362 -81918392 - L1MC3 LINE L1 -426 7359 6885 643 193 39 8 chr15 3777367 3777514 -81918240 - MSTC LTR MaLR -244 152 1 427 253 0 108 chr15 3777864 3777939 -81917815 + MER54A LTR ERVL 1 83 -818 1961 128 20 14 chr15 3777939 3778235 -81917519 + AluSx SINE Alu 1 298 -14 427 253 0 108 chr15 3778235 3778353 -81917401 + MER54A LTR ERVL 83 173 -728 215 228 18 0 chr15 3778503 3778560 -81917194 - MIR SINE MIR -64 198 141 2229 121 0 7 chr15 3778723 3779030 -81916724 + AluSx SINE Alu 1 305 -7 363 260 160 35 chr15 3779086 3779317 -81916437 - L1M4 LINE L1 -1125 5021 4762 23 33 0 0 chr15 3779887 3779917 -81915837 + AT_rich Low_complexity Low_complexity 1 30 0 483 163 39 28 chr15 3779994 3780172 -81915582 + (TA)n Simple_repeat Simple_repeat 1 180 0 2528 34 7 10 chr15 3780253 3780550 -81915204 + AluY SINE Alu 2 297 -14 2291 116 160 2 chr15 3780550 3780956 -81914798 - MER31A LTR ERV1 -15 470 1 570 195 122 12 chr15 3781484 3781648 -81914106 - MER5A DNA MER1_type 0 189 8 2189 102 0 41 chr15 3783019 3783334 -81912420 + AluSq SINE Alu 1 302 -11 213 281 49 12 chr15 3783339 3783421 -81912333 - MIR SINE MIR -146 116 32 2208 124 0 13 chr15 3783993 3784308 -81911446 - AluSx SINE Alu -1 311 1 326 369 0 0 chr15 3784312 3784461 -81911293 - L1ME LINE L1 -402 5768 5620 1034 268 119 28 chr15 3784467 3784937 -81910817 + L1ME3A LINE L1 5528 6040 -130 321 26 0 0 chr15 3784979 3785017 -81910737 + (TG)n Simple_repeat Simple_repeat 2 39 0 420 52 0 0 chr15 3785026 3785084 -81910670 - Alu SINE Alu -5 307 250 377 190 53 0 chr15 3785085 3785173 -81910581 - AluSq/x SINE Alu -160 143 65 502 278 87 80 chr15 3785173 3785687 -81910067 - LTR48B LTR ERV1 0 633 20 1074 175 10 35 chr15 3785688 3785888 -81909866 - AluJb SINE Alu -115 197 3 812 143 32 0 chr15 3786433 3786559 -81909195 + FLAM_C SINE Alu 1 130 -3 1129 185 138 31 chr15 3786725 3786847 -81908907 - AluJo SINE Alu -31 281 173 2283 69 24 0 chr15 3786847 3787135 -81908619 - AluY SINE Alu -16 295 1 1129 185 138 31 chr15 3787135 3787266 -81908488 - AluJo SINE Alu -139 173 1 33 43 0 0 chr15 3787353 3787400 -81908354 + AT_rich Low_complexity Low_complexity 1 47 0 397 248 64 40 chr15 3787468 3787593 -81908161 - MER94 DNA DNA -5 129 2 273 183 139 52 chr15 3787775 3787827 -81907927 - L1MC4 LINE L1 0 8042 7996 1700 166 0 45 chr15 3787827 3788135 -81907619 + AluJo SINE Alu 4 297 -15 273 183 139 52 chr15 3788135 3788197 -81907557 - L1MC4 LINE L1 -46 7996 7918 1718 201 0 3 chr15 3788225 3788523 -81907231 - AluJo SINE Alu -15 297 1 345 24 0 0 chr15 3788578 3788620 -81907134 + (T)n Simple_repeat Simple_repeat 1 42 0 898 106 0 15 chr15 3788756 3788888 -81906866 + AluSg/x SINE Alu 176 305 -7 2241 108 0 0 chr15 3788979 3789276 -81906478 + AluSg SINE Alu 1 297 -13 1202 184 43 71 chr15 3789282 3789608 -81906146 - LTR48B-int LTR ERV1 -55 4881 4565 329 253 0 0 chr15 3789582 3789661 -81906093 - LTR48B-int LTR ERV1 -941 3930 3852 * 1261 223 129 42 chr15 3789689 3789865 -81905889 - MER39 LTR ERV1 0 707 548 1747 160 3 31 chr15 3789865 3790183 -81905571 - AluJb SINE Alu -3 309 1 1261 223 129 42 chr15 3790183 3790392 -81905362 - MER39 LTR ERV1 -159 548 288 507 192 123 68 chr15 3790574 3790793 -81904961 - MER31-int LTR ERV1 -4160 776 546 * 680 228 98 23 chr15 3790786 3791001 -81904753 - MER31-int LTR ERV1 -4505 431 201 2461 67 3 3 chr15 3791066 3791363 -81904391 + AluY SINE Alu 1 297 -14 733 111 0 0 chr15 3791395 3791494 -81904260 - AluJ/FLAM SINE Alu -212 100 2 2215 112 0 0 chr15 3791522 3791808 -81903946 + AluSg SINE Alu 1 286 -24 546 197 21 42 chr15 3791856 3791998 -81903756 + MLT1A1 LTR MaLR 227 365 0 1987 153 38 3 chr15 3791998 3792339 -81903415 + MLT1A1-int LTR MaLR 1 353 -1382 770 203 38 55 chr15 3792363 3792600 -81903154 - PABL_B LTR ERV1 -66 601 369 314 319 64 29 chr15 3793688 3793892 -81901862 - PABL_B LTR ERV1 -456 211 1 988 197 53 5 chr15 3793892 3794080 -81901674 + MLT-int LTR MaLR 348 544 -1191 896 157 54 0 chr15 3794083 3794230 -81901524 + FRAM SINE Alu 1 155 -11 2207 91 0 11 chr15 3794235 3794539 -81901215 - AluSg SINE Alu 0 301 1 4792 215 24 76 chr15 3794908 3795903 -81899851 + MLT1A1-int LTR MaLR 512 1428 -307 639 186 59 0 chr15 3795903 3796021 -81899733 - FLAM_A SINE Alu -8 125 1 4792 215 24 76 chr15 3796021 3796295 -81899459 + MLT1A1-int LTR MaLR 1428 1715 -20 828 232 22 130 chr15 3796318 3796685 -81899069 + MLT1A1 LTR MaLR 1 321 -44 2161 123 3 0 chr15 3796685 3796985 -81898769 - AluSx SINE Alu -11 301 1 828 232 22 130 chr15 3796985 3797026 -81898728 + MLT1A1 LTR MaLR 321 365 0 2092 122 0 17 chr15 3797106 3797432 -81898322 + AluSx SINE Alu 1 312 0 2965 159 32 32 chr15 3797435 3798000 -81897754 - MER34B LTR ERV1 0 565 1 366 241 71 27 chr15 3798000 3798112 -81897642 - MER31A-int LTR ERV1 -4648 288 172 741 124 20 92 chr15 3798159 3798312 -81897442 + FLAM_C SINE Alu 2 143 0 514 274 20 26 chr15 3798316 3798469 -81897285 - MER31A-int LTR ERV1 -4770 166 15 2452 141 43 56 chr15 3798491 3798857 -81896897 - MER31A LTR ERV1 -7 478 118 2285 96 0 7 chr15 3798857 3799170 -81896584 - AluSg SINE Alu 0 310 1 2452 141 43 56 chr15 3799170 3799287 -81896467 - MER31A LTR ERV1 -367 118 1 2215 93 38 3 chr15 3799713 3800004 -81895750 - AluSg SINE Alu -9 301 1 255 161 0 0 chr15 3800086 3800142 -81895612 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 800 191 13 7 chr15 3800171 3800323 -81895431 + AluJb SINE Alu 156 308 -4 663 125 22 125 chr15 3800483 3800619 -81895135 - LTR12 LTR ERV1 -234 480 359 245 280 13 0 chr15 3800620 3800695 -81895059 - LTR30 LTR ERV1 -99 623 548 1570 118 122 4 chr15 3800698 3800953 -81894801 - LTR12 LTR ERV1 -429 285 1 1004 183 17 74 chr15 3803014 3803095 -81892659 - AluSx SINE Alu -95 217 133 2240 84 3 7 chr15 3803095 3803407 -81892347 - AluSx SINE Alu 0 311 1 1004 183 17 74 chr15 3803407 3803554 -81892200 - AluSx SINE Alu -179 133 1 1931 226 52 21 chr15 3803560 3804083 -81891671 - MER74B LTR ERVL -82 540 2 2399 170 38 57 chr15 3804086 3804398 -81891356 - L1M3 LINE L1 -560 5623 5307 192 97 0 0 chr15 3804398 3804429 -81891325 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1960 147 7 0 chr15 3804429 3804710 -81891044 - AluSx SINE Alu -29 283 1 2399 170 38 57 chr15 3804710 3804761 -81890993 - L1M3 LINE L1 -875 5308 5258 2027 166 0 0 chr15 3804761 3805068 -81890686 - AluSx SINE Alu -5 307 1 2399 170 38 57 chr15 3805068 3805541 -81890213 - L1M3 LINE L1 -925 5258 4793 240 59 0 0 chr15 3805727 3805761 -81889993 + (TG)n Simple_repeat Simple_repeat 1 34 0 867 196 6 30 chr15 3805783 3805951 -81889803 - MLT2D LTR ERVL -54 360 197 2163 123 20 0 chr15 3805952 3806254 -81889500 - AluSx SINE Alu -4 308 1 12638 184 39 20 chr15 3806255 3806736 -81889018 - ERVL LTR ERVL -303 5461 4991 2167 113 0 3 chr15 3806736 3807055 -81888699 - AluSg SINE Alu 0 310 1 12638 184 39 20 chr15 3807055 3808788 -81886966 - ERVL LTR ERVL -773 4991 3198 2195 135 0 6 chr15 3808788 3809099 -81886655 - AluSx SINE Alu -3 309 1 12638 184 39 20 chr15 3809099 3809224 -81886530 - ERVL LTR ERVL -2566 3198 3077 544 258 67 16 chr15 3809208 3809402 -81886352 - ERVL LTR ERVL -5345 419 216 * 848 107 90 0 chr15 3809404 3809526 -81886228 + AluSq/x SINE Alu 1 133 -180 272 264 86 71 chr15 3809537 3809677 -81886077 - ERVL LTR ERVL -5621 143 2 1912 179 42 32 chr15 3809685 3810088 -81885666 - MLT2D LTR ERVL -7 407 1 940 203 81 0 chr15 3810088 3810285 -81885469 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 3810321 3810345 -81885409 + (A)n Simple_repeat Simple_repeat 1 24 0 876 184 0 7 chr15 3810390 3810542 -81885212 + FAM SINE Alu 20 170 -15 434 270 20 7 chr15 3811087 3811239 -81884515 + MIR SINE MIR 2 155 -107 1046 175 0 0 chr15 3811240 3811406 -81884348 + AluJb SINE Alu 137 302 -10 1618 199 3 27 chr15 3811434 3811735 -81884019 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 3811754 3811793 -81883961 + AT_rich Low_complexity Low_complexity 1 39 0 200 235 59 0 chr15 3811823 3811874 -81883880 + MIR SINE MIR 184 237 -25 2285 114 3 0 chr15 3812328 3812634 -81883120 + AluSg SINE Alu 1 307 -3 696 35 0 0 chr15 3812926 3813012 -81882742 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 3813079 3813102 -81882652 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2188 101 0 11 chr15 3813105 3813391 -81882363 - AluSc SINE Alu -26 283 1 1450 183 101 6 chr15 3813391 3813729 -81882025 - L1MC3 LINE L1 -23 7762 7393 * 3294 166 50 100 chr15 3813726 3813991 -81881763 - L1MB7 LINE L1 0 6184 5907 2470 100 0 0 chr15 3813991 3814302 -81881452 - AluSx SINE Alu -1 311 1 3294 166 50 100 chr15 3814302 3814349 -81881405 - L1MB7 LINE L1 -277 5907 5859 1723 189 0 3 chr15 3814349 3814650 -81881104 + AluJo SINE Alu 2 301 -11 3294 166 50 100 chr15 3814650 3814796 -81880958 - L1MB7 LINE L1 -325 5859 5707 1524 199 46 26 chr15 3814796 3815102 -81880652 - AluJo SINE Alu 0 312 1 3294 166 50 100 chr15 3815102 3815162 -81880592 - L1MB7 LINE L1 -477 5707 5646 2278 95 0 0 chr15 3815162 3815447 -81880307 - AluSg SINE Alu -17 293 9 3294 166 50 100 chr15 3815447 3815521 -81880233 - L1MB7 LINE L1 -538 5646 5570 1756 163 16 10 chr15 3815521 3815828 -81879926 - AluJo SINE Alu -3 309 1 1889 130 13 23 chr15 3815834 3816142 -81879612 - AluSx SINE Alu -7 305 1 3294 166 50 100 chr15 3816142 3816493 -81879261 - L1MB7 LINE L1 -619 5565 5297 2055 146 7 0 chr15 3816493 3816787 -81878967 - AluSx SINE Alu -16 296 1 3294 166 50 100 chr15 3816787 3817016 -81878738 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 3817016 3817163 -81878591 + (TA)n Simple_repeat Simple_repeat 2 151 0 270 133 0 0 chr15 3817191 3817236 -81878518 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 3817701 3817737 -81878017 + AT_rich Low_complexity Low_complexity 1 36 0 302 254 97 6 chr15 3817775 3817940 -81877814 + L1MC3 LINE L1 7444 7623 -162 409 276 91 25 chr15 3818007 3818250 -81877504 - MIR SINE MIR -2 260 2 2250 110 3 0 chr15 3818301 3818600 -81877154 - AluSc SINE Alu -9 300 1 320 187 13 27 chr15 3818673 3818748 -81877006 - MER116 DNA Mariner -6 74 1 564 263 10 57 chr15 3822415 3822609 -81873145 + MIR3 SINE MIR 15 199 -9 521 249 171 63 chr15 3823745 3824206 -81871548 + MLT2B1 LTR ERVL 2 512 -8 371 123 99 12 chr15 3824418 3824499 -81871255 - MER20B DNA MER1_type -71 712 625 2583 170 236 15 chr15 3824607 3825320 -81870434 + MER52C LTR ERV1 409 1278 0 1198 204 41 44 chr15 3825498 3825885 -81869869 + L1MC/D LINE L1 5288 5680 -688 210 256 26 64 chr15 3826318 3826396 -81869358 - MER5A DNA MER1_type -6 183 109 1787 129 48 3 chr15 3826920 3827230 -81868524 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr15 3827234 3827266 -81868488 + (T)n Simple_repeat Simple_repeat 1 32 0 5265 48 5 1 chr15 3828780 3829433 -81866321 + L1PA5 LINE L1 5500 6154 0 193 322 44 0 chr15 3829685 3829775 -81865979 - L2 LINE L2 -4 3309 3216 345 285 64 121 chr15 3830132 3830381 -81865373 - L2 LINE L2 -6 3266 3032 287 281 0 0 chr15 3830398 3830462 -81865292 + L2 LINE L2 3201 3264 -8 25 0 0 0 chr15 3830577 3830602 -81865152 + AT_rich Low_complexity Low_complexity 1 25 0 1192 165 89 8 chr15 3831051 3831287 -81864467 - AluJb SINE Alu -18 294 40 668 201 63 0 chr15 3831305 3831479 -81864275 - L1M4 LINE L1 -733 5441 5257 318 258 11 84 chr15 3831495 3831673 -81864081 - L1MA10 LINE L1 -13 6321 6157 323 254 127 5 chr15 3831679 3831876 -81863878 - L1M4 LINE L1 -870 5276 5056 1720 176 28 3 chr15 3832772 3833062 -81862692 - AluJo SINE Alu -15 297 1 21 36 0 0 chr15 3833139 3833167 -81862587 + AT_rich Low_complexity Low_complexity 1 28 0 2311 113 0 0 chr15 3833183 3833484 -81862270 - AluSg SINE Alu -9 301 1 258 268 113 12 chr15 3833515 3833683 -81862071 + L1MC/D LINE L1 5706 5890 -1918 21 36 0 0 chr15 3833884 3833912 -81861842 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr15 3836012 3836097 -81859657 + AT_rich Low_complexity Low_complexity 1 85 0 1230 113 0 0 chr15 3836608 3836768 -81858986 - AluSx SINE Alu -150 162 3 765 143 54 0 chr15 3836917 3837064 -81858690 + L1MB7 LINE L1 5696 5850 -334 622 160 84 25 chr15 3837288 3837407 -81858347 - FLAM_C SINE Alu -6 127 2 1535 193 10 3 chr15 3837735 3838030 -81857724 + AluJo SINE Alu 1 297 -15 446 141 0 81 chr15 3838148 3838247 -81857507 + FLAM_A SINE Alu 40 130 -12 2070 116 0 7 chr15 3839708 3839993 -81855761 - AluSx SINE Alu -29 283 1 691 208 104 22 chr15 3840003 3840186 -81855568 + Tigger3(Golem) DNA MER2_type 2811 3008 -21 2192 91 0 39 chr15 3840197 3840504 -81855250 - AluSq SINE Alu -18 295 1 734 102 68 0 chr15 3841422 3841540 -81854214 - AluSx SINE Alu -9 301 176 847 117 0 39 chr15 3841540 3841668 -81854086 - AluSx SINE Alu -189 123 1 405 248 44 9 chr15 3841902 3842015 -81853739 + MER106A DNA MER1_type 1 117 -119 1992 115 17 3 chr15 3844162 3844450 -81851304 + AluSq SINE Alu 1 292 -21 1860 122 83 17 chr15 3845538 3845826 -81849928 - AluSp SINE Alu -6 307 1 2062 130 10 0 chr15 3846486 3846786 -81848968 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 3846794 3846815 -81848939 + AT_rich Low_complexity Low_complexity 1 21 0 594 280 115 85 chr15 3847285 3847956 -81847798 - MER21B LTR ERV1 -149 714 24 2239 100 0 7 chr15 3848590 3848889 -81846865 + AluSx SINE Alu 3 299 -13 1118 165 0 0 chr15 3848889 3849059 -81846695 + AluSg/x SINE Alu 134 303 -9 26 0 0 0 chr15 3849550 3849576 -81846178 + AT_rich Low_complexity Low_complexity 1 26 0 2165 116 3 0 chr15 3850365 3850659 -81845095 - AluSq SINE Alu -18 295 1 586 259 27 22 chr15 3851043 3851228 -81844526 + MER58A DNA MER1_type 33 218 -6 1989 131 3 3 chr15 3851528 3851819 -81843935 + AluSx SINE Alu 1 291 -21 36 23 0 0 chr15 3852753 3852796 -81842958 + AT_rich Low_complexity Low_complexity 1 43 0 654 69 129 0 chr15 3852866 3852967 -81842787 - MER85 DNA T2_type -25 114 1 444 275 10 28 chr15 3852967 3853154 -81842600 - L1MB7 LINE L1 -3 6181 5994 2211 117 0 0 chr15 3853205 3853503 -81842251 + AluSx SINE Alu 1 298 -14 2493 68 13 0 chr15 3855368 3855675 -81840079 + AluY SINE Alu 1 311 0 2115 117 0 0 chr15 3856228 3856530 -81839224 - AluSx SINE Alu 0 302 1 248 283 22 33 chr15 3857458 3857550 -81838204 + L2 LINE L2 3221 3311 -2 1349 186 67 22 chr15 3857575 3857844 -81837910 - AluJo SINE Alu -29 283 3 1858 108 0 34 chr15 3858091 3858388 -81837366 + AluSx SINE Alu 19 305 -7 2058 142 14 0 chr15 3858476 3858772 -81836982 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr15 3859744 3859767 -81835987 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 332 26 0 0 chr15 3859766 3859804 -81835950 + (TG)n Simple_repeat Simple_repeat 1 38 0 1318 153 61 4 chr15 3860342 3860570 -81835184 - AluSg SINE Alu -69 241 1 315 161 0 0 chr15 3861799 3861855 -81833899 + (TG)n Simple_repeat Simple_repeat 2 57 0 548 263 111 12 chr15 3862434 3862605 -81833149 - MER5A DNA MER1_type 0 189 2 22 56 0 0 chr15 3862856 3862892 -81832862 + AT_rich Low_complexity Low_complexity 1 36 0 212 402 0 0 chr15 3863977 3864059 -81831695 + L2 LINE L2 3214 3295 -18 201 240 0 0 chr15 3867912 3867987 -81827767 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr15 3868444 3868472 -81827282 + AT_rich Low_complexity Low_complexity 1 28 0 469 283 40 35 chr15 3869330 3869528 -81826226 - MER8 DNA MER2_type -40 199 1 25 31 0 0 chr15 3869911 3869943 -81825811 + AT_rich Low_complexity Low_complexity 1 32 0 2286 86 0 0 chr15 3869994 3870285 -81825469 + AluSg SINE Alu 1 291 -19 228 151 38 0 chr15 3870895 3870948 -81824806 - MER109 Unknown Unknown -1442 990 936 2283 88 0 16 chr15 3871953 3872258 -81823496 + AluSq SINE Alu 1 300 -13 3784 97 122 5 chr15 3874195 3874785 -81820969 - PABL_A LTR ERV1 -1 659 1 295 231 115 0 chr15 3875459 3875537 -81820217 - MLT1G LTR MaLR -7 583 497 2021 106 46 13 chr15 3875824 3876127 -81819627 + AluSq SINE Alu 1 313 0 325 275 90 47 chr15 3877652 3877863 -81817891 - L1M4 LINE L1 -1426 4720 4501 2247 256 57 31 chr15 3878607 3879221 -81816533 - L1 LINE L1 -1278 4868 4222 1645 143 94 0 chr15 3879221 3879487 -81816267 - AluSq SINE Alu -22 291 1 2247 256 57 31 chr15 3879487 3879764 -81815990 - L1 LINE L1 -1924 4222 3954 799 266 186 20 chr15 3879765 3879914 -81815840 - L1 LINE L1 -2449 3697 3574 2416 70 0 3 chr15 3879914 3880216 -81815538 - AluY SINE Alu -10 301 1 799 266 186 20 chr15 3880216 3881008 -81814746 - L1 LINE L1 -2572 3574 2600 1720 117 0 0 chr15 3881032 3881262 -81814492 - AluSg SINE Alu -29 281 52 1080 173 42 35 chr15 3881368 3881628 -81814126 + AluSx SINE Alu 51 312 0 1848 100 126 0 chr15 3881638 3881909 -81813845 + AluSx SINE Alu 1 305 -7 1234 121 0 0 chr15 3881909 3882075 -81813679 + AluSg/x SINE Alu 134 299 -13 2195 106 0 0 chr15 3882175 3882468 -81813286 + AluSg SINE Alu 3 295 -15 1195 188 50 67 chr15 3882468 3882800 -81812954 - PABL_B-int LTR ERV1 -44 4892 4565 322 253 0 0 chr15 3882774 3882853 -81812901 - PABL_B-int LTR ERV1 -941 3930 3852 * 1215 228 148 40 chr15 3882881 3883057 -81812697 - MER39 LTR ERV1 0 707 552 1729 160 3 31 chr15 3883057 3883375 -81812379 - AluJb SINE Alu -3 309 1 1215 228 148 40 chr15 3883375 3883602 -81812152 - MER39 LTR ERV1 -155 552 260 529 188 127 66 chr15 3883766 3883979 -81811775 - PABL_B-int LTR ERV1 -4160 776 551 * 679 228 98 23 chr15 3883978 3884193 -81811561 - PABL_B-int LTR ERV1 -4505 431 201 2505 60 0 3 chr15 3884258 3884556 -81811198 + AluY SINE Alu 1 297 -14 720 110 0 0 chr15 3884588 3884688 -81811066 - AluJ/FLAM SINE Alu -212 100 1 2347 110 0 0 chr15 3884715 3885025 -81810729 + AluSg SINE Alu 1 310 0 540 197 21 42 chr15 3885050 3885192 -81810562 + MLT1A1 LTR MaLR 227 365 0 1941 153 38 3 chr15 3885192 3885533 -81810221 + MLT1A1-int LTR MaLR 1 353 -1382 727 207 38 55 chr15 3885552 3885789 -81809965 - PABL_B LTR ERV1 -66 601 369 307 319 64 29 chr15 3886880 3887084 -81808670 - PABL_B LTR ERV1 -456 211 1 960 198 53 5 chr15 3887084 3887271 -81808483 + MLT-int LTR MaLR 348 543 -1192 961 146 53 0 chr15 3887271 3887422 -81808332 + FRAM SINE Alu 1 155 -21 2184 88 0 11 chr15 3887427 3887731 -81808023 - AluSg SINE Alu 0 301 1 4708 216 20 76 chr15 3888116 3889095 -81806659 + MLT1A1-int LTR MaLR 532 1427 -308 627 186 59 0 chr15 3889095 3889213 -81806541 - FLAM_A SINE Alu -8 125 1 4708 216 20 76 chr15 3889213 3889487 -81806267 + MLT1A1-int LTR MaLR 1427 1715 -20 856 247 20 112 chr15 3889510 3889877 -81805877 + MLT1A1 LTR MaLR 1 424 -33 1301 107 0 0 chr15 3889877 3890045 -81805709 - AluSg/x SINE Alu -11 301 134 363 65 0 0 chr15 3890046 3890092 -81805662 - Alu SINE Alu -257 46 1 484 265 76 0 chr15 3890113 3890336 -81805418 - L1M4 LINE L1 -3563 2819 2580 3686 198 75 44 chr15 3890347 3890446 -81805308 - L1M4 LINE L1 -4272 2112 2018 2310 74 0 3 chr15 3890446 3890731 -81805023 - AluY SINE Alu -27 284 1 3686 198 75 44 chr15 3890731 3890888 -81804866 - L1M4 LINE L1 -4366 2018 1867 1463 205 0 33 chr15 3890888 3891191 -81804563 + AluJo SINE Alu 1 293 -19 3686 198 75 44 chr15 3891191 3892090 -81803664 - L1M4 LINE L1 -4517 1867 920 1053 234 75 67 chr15 3892091 3892479 -81803275 - L1M4 LINE L1 -5980 404 14 1290 216 40 7 chr15 3892483 3892784 -81802970 - AluJo SINE Alu -1 311 1 940 253 129 3 chr15 3892863 3893234 -81802520 - L1MB4 LINE L1 -1 6179 5762 347 234 54 18 chr15 3893403 3893514 -81802240 - L1MB4 LINE L1 -479 5701 5587 977 242 104 4 chr15 3893794 3894063 -81801691 + AluJo SINE Alu 1 296 -6 21 57 0 0 chr15 3895164 3895199 -81800555 + AT_rich Low_complexity Low_complexity 1 35 0 270 227 93 0 chr15 3895518 3895615 -81800139 - L1MC5 LINE L1 -886 7075 6970 1711 163 10 24 chr15 3895854 3896149 -81799605 - AluSx SINE Alu -19 293 3 22 0 0 54 chr15 3896156 3896174 -81799580 + AT_rich Low_complexity Low_complexity 1 18 -17 2094 132 6 0 chr15 3896174 3896485 -81799269 - AluSp SINE Alu 0 313 1 22 0 0 54 chr15 3896485 3896503 -81799251 + AT_rich Low_complexity Low_complexity 18 35 0 1814 161 0 7 chr15 3896543 3896828 -81798926 - AluSx SINE Alu -19 293 11 746 112 19 0 chr15 3897287 3897394 -81798360 + BC200 scRNA scRNA 12 120 -80 491 300 29 40 chr15 3898571 3898844 -81796910 + L1MC/D LINE L1 5335 5604 -2204 2066 147 0 3 chr15 3899390 3899697 -81796057 + AluSx SINE Alu 1 306 -6 1957 128 7 0 chr15 3900869 3901143 -81794611 + AluSg SINE Alu 12 287 -23 768 247 12 18 chr15 3905725 3905895 -81789859 - MER58A DNA MER1_type -55 169 1 294 238 112 93 chr15 3906544 3906715 -81789039 - L1MC/D LINE L1 -2154 5654 5477 2249 95 10 3 chr15 3906715 3907009 -81788745 + AluSx SINE Alu 1 296 -16 294 238 112 93 chr15 3907009 3907051 -81788703 - L1MC/D LINE L1 -2331 5477 5437 1296 279 109 42 chr15 3907262 3908145 -81787609 - L1MD3 LINE L1 -6 8036 7103 390 356 169 12 chr15 3910524 3911010 -81784744 - L2 LINE L2 -746 2568 2007 2408 91 0 0 chr15 3911701 3911998 -81783756 + AluSq SINE Alu 1 297 -16 585 262 122 67 chr15 3914560 3915274 -81780480 - L1MDa LINE L1 -4471 1609 857 1340 173 39 27 chr15 3915276 3915536 -81780218 - AluJo SINE Alu -7 305 43 383 254 123 9 chr15 3915582 3915810 -81779944 - L1MDa LINE L1 -5253 817 564 403 217 15 152 chr15 3915817 3916015 -81779739 - MER20 DNA MER1_type -5 214 44 639 242 4 78 chr15 3916120 3916364 -81779390 - L1MDa LINE L1 -5525 545 320 524 321 29 0 chr15 3916369 3916578 -81779176 - L1MDa LINE L1 -5846 224 10 202 231 88 0 chr15 3917819 3917910 -81777844 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 727 249 41 30 chr15 3918264 3918461 -81777293 - MER58A DNA MER1_type 0 224 26 252 228 18 53 chr15 3919195 3919309 -81776445 + L1ME LINE L1 5311 5420 -883 24 32 0 0 chr15 3919336 3919367 -81776387 + AT_rich Low_complexity Low_complexity 1 31 0 532 309 98 4 chr15 3919438 3919674 -81776080 + L1ME LINE L1 5552 5809 -312 36 62 0 0 chr15 3920001 3920065 -81775689 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr15 3920187 3920222 -81775532 + AT_rich Low_complexity Low_complexity 1 35 0 1589 258 156 14 chr15 3921294 3922146 -81773608 + L1MC4 LINE L1 7067 8039 -3 851 204 196 8 chr15 3922319 3922574 -81773180 - L1MB7 LINE L1 -300 5884 5582 2480 83 0 16 chr15 3922724 3923037 -81772717 + AluY SINE Alu 1 308 -3 450 0 0 0 chr15 3923437 3923487 -81772267 + (TA)n Simple_repeat Simple_repeat 1 50 0 2087 114 4 0 chr15 3923756 3924036 -81771718 + AluSx SINE Alu 11 291 -21 63 26 0 0 chr15 3924356 3924433 -81771321 + AT_rich Low_complexity Low_complexity 1 77 0 758 181 0 30 chr15 3924608 3924741 -81771013 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr15 3924741 3924763 -81770991 + AT_rich Low_complexity Low_complexity 1 22 0 2127 87 72 0 chr15 3924901 3925177 -81770577 + AluSp SINE Alu 1 296 -17 191 35 0 35 chr15 3926143 3926172 -81769582 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1481 197 0 67 chr15 3926176 3926476 -81769278 - AluJo SINE Alu -31 281 2 1412 223 98 119 chr15 3926477 3926911 -81768843 - L1M4 LINE L1 -2428 4216 3774 424 328 8 0 chr15 3926911 3927036 -81768718 - FLAM_C SINE Alu -7 126 1 1412 223 98 119 chr15 3927036 3927833 -81767921 - L1M4 LINE L1 -2870 3774 2893 2530 65 0 0 chr15 3927833 3928127 -81767627 - AluY SINE Alu -17 294 1 1412 223 98 119 chr15 3928127 3928259 -81767495 - L1M4 LINE L1 -3751 2893 2760 1099 191 0 38 chr15 3928278 3928488 -81767266 - AluJo SINE Alu -27 285 84 537 254 106 39 chr15 3928502 3929631 -81766123 - L1M4 LINE L1 -3884 2762 1337 1126 146 3 3 chr15 3929680 3930018 -81765736 - L1PA15 LINE L1 -20 6145 5756 1837 175 47 57 chr15 3930019 3930560 -81765194 + MLT2A2 LTR ERVL 1 554 0 2347 139 70 32 chr15 3930560 3930887 -81764867 - L1PA15 LINE L1 -407 5759 5409 1792 151 43 0 chr15 3930887 3931186 -81764568 - AluSx SINE Alu 0 312 1 2347 139 70 32 chr15 3931186 3931385 -81764369 - L1PA15 LINE L1 -757 5409 5219 2121 187 22 11 chr15 3931421 3931751 -81764003 - L1M3 LINE L1 -514 5820 5482 2219 91 0 4 chr15 3931751 3932026 -81763728 - AluSq SINE Alu -39 274 1 2121 187 22 11 chr15 3932026 3932154 -81763600 - L1M3 LINE L1 -852 5482 5357 703 196 0 5 chr15 3932254 3932469 -81763285 + CT-rich Low_complexity Low_complexity 1 213 0 1054 231 30 41 chr15 3932499 3932767 -81762987 - AluJb SINE Alu -43 269 5 2004 239 62 13 chr15 3932783 3933466 -81762288 - L1M3 LINE L1 -895 5251 4536 566 121 9 0 chr15 3934135 3934251 -81761503 + (CA)n Simple_repeat Simple_repeat 2 118 0 348 64 0 0 chr15 3936950 3936997 -81758757 + (CA)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr15 3942305 3942332 -81753422 + (CA)n Simple_repeat Simple_repeat 2 28 0 318 204 0 0 chr15 3945015 3945123 -81750631 + (CA)n Simple_repeat Simple_repeat 1 108 0 230 284 0 0 chr15 3950517 3950584 -81745170 + (CA)n Simple_repeat Simple_repeat 2 68 0 297 131 0 0 chr15 3953215 3953276 -81742478 + (CA)n Simple_repeat Simple_repeat 2 62 0 297 0 0 0 chr15 3955852 3955885 -81739869 + (CA)n Simple_repeat Simple_repeat 1 33 0 201 182 0 0 chr15 3978236 3978269 -81717485 + T-rich Low_complexity Low_complexity 1 33 0 2111 141 14 0 chr15 3979383 3979680 -81716074 + AluSg SINE Alu 1 301 -9 1705 235 80 55 chr15 3979718 3980403 -81715351 - L1MDb LINE L1 -5045 1364 663 343 159 0 72 chr15 4030962 4031031 -81664723 + MER58 DNA MER1_type 2357 2420 0 1742 170 11 3 chr15 4031054 4031337 -81664417 - AluSx SINE Alu -27 285 1 1879 146 3 3 chr15 4031471 4031765 -81663989 + AluSx SINE Alu 2 295 -17 2216 102 10 3 chr15 4032317 4032610 -81663144 + AluSg SINE Alu 1 295 -15 2127 148 143 11 chr15 4032965 4033343 -81662411 - MSTA LTR MaLR 0 428 1 2060 130 7 0 chr15 4033443 4033743 -81662011 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 4033821 4033851 -81661903 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 827 181 87 0 chr15 4033858 4034007 -81661747 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 4034007 4034030 -81661724 + AT_rich Low_complexity Low_complexity 1 23 0 2674 166 58 42 chr15 4034092 4034595 -81661159 - L1MB3 LINE L1 -1 6182 5668 1885 125 0 54 chr15 4034595 4034908 -81660846 - AluSx SINE Alu -16 296 1 2674 166 58 42 chr15 4034908 4034958 -81660796 - L1MB3 LINE L1 -515 5668 5620 663 126 0 0 chr15 4034967 4035054 -81660700 - AluS SINE Alu -225 88 2 1947 226 52 21 chr15 4035061 4035584 -81660170 - MER74B LTR ERVL -82 540 2 2421 166 43 61 chr15 4035587 4035899 -81659855 - L1MB3 LINE L1 -560 5623 5307 192 97 0 0 chr15 4035899 4035930 -81659824 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2021 142 0 0 chr15 4035930 4036213 -81659541 - AluSx SINE Alu -29 283 1 2421 166 43 61 chr15 4036213 4036264 -81659490 - L1MB3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 4036264 4036571 -81659183 - AluSx SINE Alu -5 307 1 2421 166 43 61 chr15 4036571 4037044 -81658710 - L1MB3 LINE L1 -925 5258 4793 240 59 0 0 chr15 4037230 4037264 -81658490 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 4037286 4037454 -81658300 - MLT2D LTR ERVL -54 360 197 2189 122 16 0 chr15 4037455 4037758 -81657996 - AluSx SINE Alu -4 308 1 12706 182 39 20 chr15 4037759 4038240 -81657514 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 4038240 4038559 -81657195 - AluSg SINE Alu 0 310 1 12706 182 39 20 chr15 4038559 4040292 -81655462 - ERVL LTR ERVL -773 4991 3198 2160 138 0 6 chr15 4040292 4040603 -81655151 - AluSx SINE Alu -3 309 1 12706 182 39 20 chr15 4040603 4040728 -81655026 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 4040712 4040906 -81654848 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 4040908 4041030 -81654724 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 4041041 4041181 -81654573 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 4041189 4041592 -81654162 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 4041592 4041789 -81653965 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 4041825 4041849 -81653905 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 4041894 4042046 -81653708 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 4042590 4042742 -81653012 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 4042743 4042909 -81652845 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 4042937 4043238 -81652516 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 4043257 4043296 -81652458 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 4043326 4043377 -81652377 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 4043831 4044137 -81651617 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 4044429 4044515 -81651239 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 4044582 4044605 -81651149 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2180 98 0 11 chr15 4044608 4044894 -81650860 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 4044894 4045232 -81650522 - L1MC3 LINE L1 -23 7762 7393 * 3379 166 50 99 chr15 4045229 4045493 -81650261 - L1MB7 LINE L1 0 6184 5909 2444 100 0 0 chr15 4045493 4045803 -81649951 - AluSx SINE Alu -2 310 1 3379 166 50 99 chr15 4045803 4045850 -81649904 - L1MB7 LINE L1 -275 5909 5861 1719 189 0 3 chr15 4045850 4046151 -81649603 + AluJo SINE Alu 2 301 -11 3379 166 50 99 chr15 4046151 4046297 -81649457 - L1MB7 LINE L1 -323 5861 5709 1512 199 46 26 chr15 4046297 4046603 -81649151 - AluJo SINE Alu 0 312 1 3379 166 50 99 chr15 4046603 4046663 -81649091 - L1MB7 LINE L1 -475 5709 5648 2255 95 0 0 chr15 4046663 4046948 -81648806 - AluSg SINE Alu -17 293 9 3379 166 50 99 chr15 4046948 4047022 -81648732 - L1MB7 LINE L1 -536 5648 5572 1790 156 16 10 chr15 4047022 4047329 -81648425 - AluJo SINE Alu -3 309 1 1912 129 10 23 chr15 4047335 4047644 -81648110 - AluSx SINE Alu -7 305 1 3379 166 50 99 chr15 4047644 4047995 -81647759 - L1MB7 LINE L1 -617 5567 5297 2041 146 7 0 chr15 4047995 4048289 -81647465 - AluSx SINE Alu -16 296 1 3379 166 50 99 chr15 4048289 4048518 -81647236 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 4048518 4048665 -81647089 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 4048693 4048738 -81647016 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 4049203 4049239 -81646515 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 4049277 4049442 -81646312 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 4049509 4049752 -81646002 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 4049803 4050102 -81645652 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 4050175 4050250 -81645504 - MER116 DNA Mariner -6 74 1 562 127 0 64 chr15 4054976 4055086 -81640668 - FLAM_A SINE Alu 0 142 40 1514 193 10 3 chr15 4055204 4055499 -81640255 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 4055826 4055944 -81639810 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 4056170 4056317 -81639437 - L1MB7 LINE L1 -334 5850 5696 1423 109 0 0 chr15 4056466 4056650 -81639104 + AluSx SINE Alu 3 186 -126 249 250 250 9 chr15 4056673 4056785 -81638969 - L1MB7 LINE L1 -526 5640 5502 1219 157 89 8 chr15 4056827 4057063 -81638691 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 4057081 4057255 -81638499 - L1MB7 LINE L1 -733 5441 5257 383 257 16 82 chr15 4057266 4057449 -81638305 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 4057455 4057652 -81638102 - L1MB7 LINE L1 -870 5276 5056 21 36 0 0 chr15 4059387 4059415 -81636339 + AT_rich Low_complexity Low_complexity 1 28 0 327 268 113 12 chr15 4059617 4059785 -81635969 - L1MC4a LINE L1 -1918 5890 5706 2285 116 0 0 chr15 4059816 4060117 -81635637 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr15 4060133 4060161 -81635593 + AT_rich Low_complexity Low_complexity 1 28 0 1728 169 28 3 chr15 4060238 4060528 -81635226 + AluJo SINE Alu 1 297 -15 1861 118 83 17 chr15 4060791 4061079 -81634675 - AluSp SINE Alu -6 307 1 2068 127 10 0 chr15 4061737 4062037 -81633717 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 4062045 4062066 -81633688 + AT_rich Low_complexity Low_complexity 1 21 0 902 275 112 83 chr15 4062535 4063207 -81632547 - MER21B LTR ERV1 -149 714 24 2245 100 0 7 chr15 4063841 4064140 -81631614 + AluSx SINE Alu 3 299 -13 1104 165 0 0 chr15 4064140 4064310 -81631444 + AluSg/x SINE Alu 132 301 -9 26 0 0 0 chr15 4064801 4064827 -81630927 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 3 0 chr15 4065616 4065910 -81629844 - AluSq SINE Alu -18 295 1 656 259 27 22 chr15 4066294 4066479 -81629275 + MER58A DNA MER1_type 33 218 -6 427 115 0 0 chr15 4066780 4066841 -81628913 + AluS SINE Alu 2 62 -256 893 208 120 0 chr15 4269038 4269406 -81426348 + LTR54 LTR ERV1 1 450 -60 785 245 63 100 chr15 4269437 4269996 -81425758 - MLT1E LTR MaLR -4 589 1 1200 230 109 35 chr15 4270322 4270726 -81425028 - MER57B LTR ERV1 0 434 1 182 330 11 23 chr15 4270948 4271036 -81424718 - L2 LINE L2 -255 3017 2931 1040 162 47 11 chr15 4272390 4272581 -81423173 + MLT1A1 LTR MaLR 9 206 -159 2022 192 8 6 chr15 4272625 4272985 -81422769 - MLT1A1 LTR MaLR 0 365 5 1644 219 24 4 chr15 4272989 4273359 -81422395 - MLT1A1-int LTR MaLR 0 1651 1306 3027 179 22 72 chr15 4273731 4273934 -81421820 - MLT1A1-int LTR MaLR -1031 704 492 2354 90 40 0 chr15 4273934 4274235 -81421519 - AluSq SINE Alu 0 313 1 3027 179 22 72 chr15 4274235 4274772 -81420982 - MLT1A1-int LTR MaLR -1243 492 1 186 189 0 0 chr15 4274772 4274809 -81420945 + T-rich Low_complexity Low_complexity 1 37 0 2404 105 0 9 chr15 4274811 4275126 -81420628 - AluSx SINE Alu 0 312 1 1736 188 79 9 chr15 4275135 4275476 -81420278 - MLT1A1 LTR MaLR 0 365 1 199 353 12 12 chr15 4276646 4276731 -81419023 + L2 LINE L2 3188 3272 0 225 264 127 9 chr15 4277035 4277145 -81418609 - L2 LINE L2 -223 3049 2927 642 275 85 35 chr15 4277474 4277584 -81418170 + MLT1C LTR MaLR 3 106 -361 2372 92 0 10 chr15 4277584 4277887 -81417867 - AluSc SINE Alu -7 302 3 642 275 85 35 chr15 4277887 4278215 -81417539 + MLT1C LTR MaLR 106 464 -3 748 210 82 20 chr15 4279317 4279512 -81416242 + MLT2B2 LTR ERVL 1 207 -308 390 233 11 0 chr15 4279548 4279638 -81416116 + MLT2D LTR ERVL 316 406 -8 290 302 56 16 chr15 4279913 4280039 -81415715 + MIR SINE MIR 126 256 -6 1139 219 77 28 chr15 4280060 4280412 -81415342 + MLT1C LTR MaLR 6 374 -93 1326 211 111 4 chr15 4281434 4281550 -81414204 + AluJo SINE Alu 1 103 -209 213 39 0 0 chr15 4281550 4281576 -81414178 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1326 211 111 4 chr15 4281576 4281738 -81414016 + AluJo SINE Alu 103 309 -3 749 214 0 0 chr15 4281763 4281894 -81413860 + FLAM_A SINE Alu 1 131 -2 492 271 171 65 chr15 4281966 4282457 -81413297 + MLT1H LTR MaLR 7 549 0 43 47 0 0 chr15 4282670 4282734 -81413020 + AT_rich Low_complexity Low_complexity 1 64 0 2317 97 3 31 chr15 4283401 4283722 -81412032 - AluSp SINE Alu -1 312 1 495 219 0 0 chr15 4286460 4286565 -81409189 + MER45A DNA AcHobo 72 176 -2 35 24 0 0 chr15 4288021 4288063 -81407691 + AT_rich Low_complexity Low_complexity 1 42 0 1063 178 14 14 chr15 4288727 4288941 -81406813 + MLT1A1 LTR MaLR 1 214 -151 3718 103 19 17 chr15 4288941 4289467 -81406287 - MER1A DNA MER1_type 0 527 1 5074 153 37 9 chr15 4290071 4291298 -81404456 + L1PA16 LINE L1 4730 5999 -167 1989 106 81 0 chr15 4291298 4291581 -81404173 + AluSx SINE Alu 1 306 -6 5074 153 37 9 chr15 4291581 4291752 -81404002 + L1PA16 LINE L1 5999 6164 -2 238 353 0 17 chr15 4292296 4292415 -81403339 + MER58 DNA MER1_type 10 126 -2294 1692 185 34 25 chr15 4292738 4293094 -81402660 + MER46B DNA MER2_type 1 234 -2 526 154 0 39 chr15 4293214 4293318 -81402436 - L1MA6 LINE L1 0 6300 6201 1445 141 4 21 chr15 4293382 4293616 -81402138 + AluJb SINE Alu 1 230 -82 181 358 52 22 chr15 4293923 4294057 -81401697 + L3b LINE CR1 1102 1239 -344 2090 99 57 3 chr15 4294673 4294955 -81400799 - AluSc SINE Alu -12 297 1 247 340 81 36 chr15 4296621 4296930 -81398824 - L1MC/D LINE L1 -1976 5832 5510 367 335 51 10 chr15 4298700 4298897 -81396857 - L2 LINE L2 -10 3303 3099 473 175 28 34 chr15 4298912 4299457 -81396297 + (TG)n Simple_repeat Simple_repeat 1 542 0 243 79 0 0 chr15 4299575 4299613 -81396141 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 1242 145 291 27 chr15 4299817 4300154 -81395600 - MSTA LTR MaLR 0 428 3 191 281 61 37 chr15 4300746 4300828 -81394926 - MER5B DNA MER1_type -82 96 13 1890 166 0 12 chr15 4301048 4301391 -81394363 - L1MB5 LINE L1 -194 6478 6140 1752 156 43 3 chr15 4301402 4301728 -81394026 + MER47A DNA MER2_type 28 366 0 1220 167 31 0 chr15 4301732 4301960 -81393794 - L1MB5 LINE L1 -540 6138 5904 * 3256 226 64 29 chr15 4301954 4303012 -81392742 - L1MB5 LINE L1 -1621 5023 3929 436 320 101 4 chr15 4303137 4303365 -81392389 - L1MB5 LINE L1 -6291 251 2 191 259 12 86 chr15 4304044 4304125 -81391629 - MIR3 SINE MIR -8 200 126 1765 73 20 4 chr15 4304233 4304478 -81391276 + L1PA10 LINE L1 5918 6166 -2 1740 149 11 0 chr15 4305373 4305642 -81390112 + AluSx SINE Alu 41 312 0 390 362 54 0 chr15 4305917 4306102 -81389652 - MIR SINE MIR -1 261 67 2089 98 79 25 chr15 4307287 4307643 -81388111 + THE1C LTR MaLR 1 375 0 759 233 132 35 chr15 4307716 4308007 -81387747 - MLT1E2 LTR MaLR -258 396 51 469 278 115 53 chr15 4308079 4308288 -81387466 - MIR SINE MIR -35 227 6 1304 167 40 4 chr15 4311740 4311968 -81383786 - MER46A DNA MER2_type 0 236 1 1896 216 98 5 chr15 4312939 4313366 -81382388 - MLT1C LTR MaLR 0 467 1 371 252 86 29 chr15 4313972 4314111 -81381643 - L2 LINE L2 -2 3311 3165 1972 129 0 4 chr15 4314189 4314468 -81381286 + AluSx SINE Alu 27 304 -8 227 318 45 23 chr15 4316735 4316867 -81378887 - LTR16B LTR ERVL -6 458 324 3248 233 38 55 chr15 4317156 4319166 -81376588 + L1MD2 LINE L1 4147 6133 -226 254 231 201 22 chr15 4319172 4319306 -81376448 + L1MD2 LINE L1 6191 6348 -11 21 0 0 0 chr15 4320835 4320856 -81374898 + AT_rich Low_complexity Low_complexity 1 21 0 2003 115 0 11 chr15 4321329 4321665 -81374089 + AluSx SINE Alu 1 333 0 228 226 0 19 chr15 4321962 4322015 -81373739 + C-rich Low_complexity Low_complexity 1 52 0 22 35 7 0 chr15 4325122 4325198 -81370556 + GC_rich Low_complexity Low_complexity 1 36 0 22 103 0 0 chr15 4325236 4325314 -81370440 + GC_rich Low_complexity Low_complexity 1 78 0 943 155 0 12 chr15 4326175 4326343 -81369411 + AluJb SINE Alu 1 166 -146 1920 121 0 0 chr15 4326781 4327054 -81368700 - AluSx SINE Alu -36 276 4 719 252 133 13 chr15 4327131 4327365 -81368389 - MIR SINE MIR 0 262 1 2785 10 0 0 chr15 4327896 4328207 -81367547 + AluYb8 SINE Alu 1 311 -7 289 276 0 23 chr15 4328872 4328959 -81366795 - L1ME3 LINE L1 -7 6155 6071 1877 177 88 20 chr15 4330444 4330538 -81365216 - L1MC2 LINE L1 0 6344 6258 361 36 36 0 chr15 4330538 4330593 -81365161 + (CA)n Simple_repeat Simple_repeat 2 58 0 1877 177 88 20 chr15 4330593 4330939 -81364815 - L1MC2 LINE L1 -86 6258 5874 315 291 103 14 chr15 4331390 4331756 -81363998 - L1ME LINE L1 -4869 1671 1262 2635 124 41 5 chr15 4331862 4332273 -81363481 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr15 4333203 4333225 -81362529 + AT_rich Low_complexity Low_complexity 1 22 0 408 289 162 7 chr15 4333426 4333568 -81362186 + MER5A DNA MER1_type 18 181 -8 507 335 31 11 chr15 4335488 4335679 -81360075 - L2 LINE L2 0 3313 3119 2013 113 3 0 chr15 4335900 4336184 -81359570 + AluSg SINE Alu 1 285 -25 2232 175 31 26 chr15 4336310 4336767 -81358987 + MLT1C LTR MaLR 9 467 0 3969 112 28 0 chr15 4336812 4337376 -81358378 - LTR19B LTR ERV1 0 580 1 629 207 39 96 chr15 4337600 4337808 -81357946 - MLT1A1 LTR MaLR -2 363 168 797 199 145 11 chr15 4338434 4338800 -81356954 - MER31B LTR ERV1 0 543 1 1764 157 7 0 chr15 4340684 4340971 -81354783 - AluJb SINE Alu -23 289 1 282 289 11 22 chr15 4342592 4342682 -81353072 - MLT1J1 LTR MaLR -141 305 217 330 286 62 34 chr15 4342696 4342874 -81352880 - MLT1J LTR MaLR -327 184 2 458 327 44 10 chr15 4345373 4345578 -81350176 - L3 LINE CR1 -151 1426 1215 1652 134 0 96 chr15 4345779 4346122 -81349632 + AluY SINE Alu 1 310 -1 197 357 31 10 chr15 4346350 4346448 -81349306 + MIR3 SINE MIR 102 201 -7 1997 136 110 18 chr15 4346800 4347190 -81348564 + MSTB LTR MaLR 1 426 0 218 176 20 0 chr15 4348672 4348723 -81347031 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 309 266 187 12 chr15 4350885 4351126 -81344628 + LTR16A1 LTR ERVL 75 357 -100 439 248 16 16 chr15 4351220 4351345 -81344409 + LTR67 LTR ERVL 426 550 -7 1204 203 127 152 chr15 4351367 4352145 -81343609 - LTR41 LTR ERVL -10 763 5 389 279 36 89 chr15 4352981 4353228 -81342526 + L1ME4a LINE L1 5885 6118 -3 252 212 30 15 chr15 4355819 4355885 -81339869 + CT-rich Low_complexity Low_complexity 4 70 0 386 312 95 18 chr15 4356002 4356287 -81339467 - MLT1J1 LTR MaLR -8 438 132 198 0 0 0 chr15 4356478 4356500 -81339254 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 782 286 84 35 chr15 4357132 4357387 -81338367 - MLT1E LTR MaLR 0 593 321 1949 110 52 55 chr15 4357387 4357752 -81338002 - THE1B LTR MaLR 0 364 1 782 286 84 35 chr15 4357752 4357783 -81337971 - MLT1E LTR MaLR -272 321 293 250 304 13 0 chr15 4357861 4357940 -81337814 - MLT1E LTR MaLR -436 157 78 2041 122 0 3 chr15 4358058 4358361 -81337393 - AluSg SINE Alu -8 302 1 2223 89 7 0 chr15 4361839 4362141 -81333613 - AluSx SINE Alu -8 304 1 4796 172 35 22 chr15 4362277 4363588 -81332166 + L1MB3 LINE L1 4849 6175 -8 1629 201 0 7 chr15 4365023 4365327 -81330427 - AluJo SINE Alu -10 302 1 940 218 13 0 chr15 4365691 4365916 -81329838 - L1MA4 LINE L1 -3 6297 6070 2287 63 0 16 chr15 4366169 4366484 -81329270 + AluY SINE Alu 1 310 -1 327 305 35 0 chr15 4366678 4366808 -81328946 + MIR SINE MIR 25 166 -96 253 264 239 39 chr15 4367311 4367466 -81328288 - MIR SINE MIR -26 236 51 2570 51 0 6 chr15 4367515 4367827 -81327927 + AluY SINE Alu 1 310 -1 286 290 0 0 chr15 4368676 4368745 -81327009 + MIR SINE MIR 76 144 -64 644 300 59 39 chr15 4369010 4369347 -81326407 + L1MB1 LINE L1 242 585 -5546 239 125 429 0 chr15 4369562 4369618 -81326136 + MADE1 DNA Mariner 1 80 0 376 257 30 10 chr15 4369640 4369742 -81326012 + L1M3d LINE L1 898 999 -5132 * 3923 230 66 64 chr15 4369732 4370577 -81325177 + L1MB1 LINE L1 662 1504 -4706 449 161 0 0 chr15 4370577 4370658 -81325096 + AluJ/FRAM SINE Alu 232 312 0 3923 230 66 64 chr15 4370658 4371197 -81324557 + L1MB1 LINE L1 1504 2040 -4170 2619 36 0 10 chr15 4371197 4371500 -81324254 + AluY SINE Alu 1 300 -11 3923 230 66 64 chr15 4371500 4372797 -81322957 + L1MB1 LINE L1 2040 3435 -2775 2697 236 30 10 chr15 4372801 4373533 -81322221 + L1MB1 LINE L1 4493 5239 -971 1151 184 22 4 chr15 4373530 4373758 -81321996 + L1MB1 LINE L1 5778 6009 -223 * 505 287 35 54 chr15 4373996 4374257 -81321497 - L2 LINE L2 -4 3309 3054 689 346 26 8 chr15 4374386 4374892 -81320862 + L1MEc LINE L1 1284 1798 -4598 2481 61 0 3 chr15 4375020 4375317 -81320437 - AluY SINE Alu -15 296 1 452 291 30 39 chr15 4375836 4376070 -81319684 - L1ME2 LINE L1 -10 6154 5923 * 871 234 68 0 chr15 4376067 4376315 -81319439 + L1ME2 LINE L1 5647 5911 -253 3391 98 34 23 chr15 4376496 4377025 -81318729 - L1PA14 LINE L1 -1 6160 5626 1381 176 0 5 chr15 4378871 4379092 -81316662 - AluJb SINE Alu -21 291 72 1656 107 5 32 chr15 4380382 4380909 -81314845 + MER4B LTR ERV1 1 610 0 279 324 6 59 chr15 4380917 4381071 -81314683 - MIR SINE MIR -62 146 24 276 30 0 0 chr15 4381342 4381375 -81314379 + (GA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 4381606 4381628 -81314126 + AT_rich Low_complexity Low_complexity 1 22 0 199 377 0 0 chr15 4382156 4382233 -81313521 + L2 LINE L2 3196 3272 0 256 300 12 12 chr15 4382381 4382461 -81313293 + Charlie8 DNA MER1_type 154 233 -2184 1889 284 86 57 chr15 4382502 4383641 -81312113 + L1MC4a LINE L1 -244 927 -5353 1802 254 36 39 chr15 4383679 4384514 -81311240 + L1MC4a LINE L1 1314 2307 -4256 2490 207 33 37 chr15 4384521 4385176 -81310578 + L1MC4a LINE L1 2329 2981 -3401 1522 164 114 18 chr15 4385176 4385456 -81310298 - AluJb SINE Alu -5 307 1 2490 207 33 37 chr15 4385456 4385527 -81310227 + L1MC4a LINE L1 2981 3051 -3331 376 304 62 0 chr15 4385528 4385640 -81310114 + MER94 DNA DNA 15 133 -1 704 110 0 42 chr15 4385867 4385985 -81309769 - L1MA3 LINE L1 -19 6286 6174 793 165 15 0 chr15 4386112 4386245 -81309509 - AluJo SINE Alu -171 141 7 5265 182 37 7 chr15 4386455 4387141 -81308613 - L1 LINE L1 -1049 5097 4365 207 0 0 0 chr15 4387141 4387164 -81308590 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5265 182 37 7 chr15 4387164 4387550 -81308204 - L1 LINE L1 -1781 4365 3992 5383 160 14 23 chr15 4387557 4387766 -81307988 + L1MA7 LINE L1 5042 5251 -1040 2072 122 26 13 chr15 4387766 4388070 -81307684 - AluSx SINE Alu 0 312 5 5383 160 14 23 chr15 4388070 4389107 -81306647 + L1MA7 LINE L1 5251 6281 -10 229 239 150 17 chr15 4389154 4389388 -81306366 + L1MC4a LINE L1 3199 3463 -2919 450 53 0 0 chr15 4389635 4389692 -81306062 + (CA)n Simple_repeat Simple_repeat 2 58 0 240 35 0 0 chr15 4389691 4389720 -81306034 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 241 264 41 50 chr15 4389725 4389846 -81305908 + L1MC4a LINE L1 3759 3878 -2504 413 329 82 30 chr15 4390059 4391165 -81304589 + L1MC4a LINE L1 4306 5469 -913 3443 243 83 110 chr15 4391195 4391294 -81304460 + L1MC4a LINE L1 5518 5618 -2426 2340 113 0 0 chr15 4391294 4391604 -81304150 - AluSg SINE Alu 0 310 1 3443 243 83 110 chr15 4391604 4393950 -81301804 + L1MC4a LINE L1 5618 7897 -147 1549 294 86 11 chr15 4395754 4395910 -81299844 + L1ME3 LINE L1 5272 5415 -747 2287 79 3 13 chr15 4395910 4396214 -81299540 + AluSc SINE Alu 1 301 -8 1549 294 86 11 chr15 4396214 4396720 -81299034 + L1ME3 LINE L1 5415 5984 -178 1860 97 0 73 chr15 4396841 4397155 -81298599 + AluSx SINE Alu 20 312 0 1158 183 10 0 chr15 4397846 4398048 -81297706 + AluJb SINE Alu 103 306 -6 368 183 11 0 chr15 4398055 4398148 -81297606 + GA-rich Low_complexity Low_complexity 3 96 0 22 56 0 0 chr15 4399832 4399868 -81295886 + AT_rich Low_complexity Low_complexity 1 36 0 3324 110 24 24 chr15 4399999 4400611 -81295143 + L1PA15 LINE L1 5069 5681 -484 1799 174 10 3 chr15 4400611 4400910 -81294844 + AluJb SINE Alu 1 301 -11 3324 110 24 24 chr15 4400910 4400987 -81294767 + L1PA15 LINE L1 5681 5756 -409 940 166 7 0 chr15 4400994 4401145 -81294609 + FRAM SINE Alu 9 160 -16 2134 122 18 9 chr15 4401145 4401481 -81294273 + L1PA15 LINE L1 5814 6152 -13 2107 123 3 0 chr15 4401488 4401790 -81293964 + AluSx SINE Alu 1 303 -9 352 298 191 6 chr15 4402165 4402333 -81293421 + MLT1H LTR MaLR 83 281 -268 283 170 0 0 chr15 4402359 4402406 -81293348 + L1M1 LINE L1 5816 5862 -438 1313 92 0 0 chr15 4402622 4402795 -81292959 + AluSc SINE Alu 134 306 -3 249 33 0 0 chr15 4402917 4402947 -81292807 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 235 300 190 0 chr15 4403090 4403190 -81292564 + MLT1H LTR MaLR 431 549 0 6116 76 47 37 chr15 4403320 4404829 -81290925 + SVA Other Other 327 1449 0 1000 182 0 18 chr15 4404970 4405167 -81290587 - AluJo SINE Alu 0 312 135 338 141 0 16 chr15 4405167 4405231 -81290523 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 770 176 8 0 chr15 4405231 4405362 -81290392 - AluJo SINE Alu -169 133 2 261 0 0 0 chr15 4406087 4406116 -81289638 + (A)n Simple_repeat Simple_repeat 1 29 0 810 281 9 5 chr15 4406719 4406936 -81288818 + L1MEc LINE L1 32 249 -6147 2258 264 36 70 chr15 4406959 4407121 -81288633 + L1MEc LINE L1 415 581 -5815 2541 127 7 56 chr15 4407121 4407571 -81288183 - MSTA LTR MaLR 0 428 1 2258 264 36 70 chr15 4407571 4408607 -81287147 + L1MEc LINE L1 581 1572 -4824 1142 215 66 51 chr15 4408607 4408942 -81286812 + MER2 DNA MER2_type 5 344 0 2258 264 36 70 chr15 4408942 4408979 -81286775 + L1MEc LINE L1 1572 1609 -4787 2008 324 82 30 chr15 4409003 4409881 -81285873 + L1M4b LINE L1 -562 361 -5923 577 256 65 38 chr15 4410453 4411053 -81284701 + L1M4b LINE L1 655 1238 -5325 2282 68 0 10 chr15 4411053 4411345 -81284409 + AluY SINE Alu 1 289 -22 270 0 0 0 chr15 4411353 4411383 -81284371 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 577 256 65 38 chr15 4411383 4411841 -81283913 + L1M4b LINE L1 1244 1989 -4574 25 31 0 0 chr15 4411929 4411961 -81283793 + AT_rich Low_complexity Low_complexity 1 32 0 2362 254 29 16 chr15 4412433 4413281 -81282473 + L1M4b LINE L1 2299 3112 -3270 13488 162 24 19 chr15 4413286 4415987 -81279767 + L1MA2 LINE L1 3022 5706 -2017 2387 87 3 0 chr15 4415987 4416296 -81279458 + AluY SINE Alu 1 310 -1 13488 162 24 19 chr15 4416296 4416927 -81278827 + L1MA2 LINE L1 5706 6332 -1391 2059 124 0 0 chr15 4416927 4417201 -81278553 + AluSg SINE Alu 25 298 -12 13488 162 24 19 chr15 4417201 4418514 -81277240 + L1MA2 LINE L1 6332 7721 -2 1571 218 66 61 chr15 4418545 4419104 -81276650 + L1MB7 LINE L1 5613 6174 -10 2696 234 76 26 chr15 4419140 4420345 -81275409 + L1MEc LINE L1 1997 3242 -2973 249 276 0 0 chr15 4420428 4420486 -81275268 + MIR3 SINE MIR 149 206 -2 1696 71 0 5 chr15 4420786 4420996 -81274758 - AluY SINE Alu -69 242 34 1631 152 4 12 chr15 4424221 4424477 -81271277 - AluJo SINE Alu -19 293 40 317 324 9 19 chr15 4425947 4426055 -81269699 - MIR3 SINE MIR -18 190 84 564 262 38 0 chr15 4426464 4426647 -81269107 + L1M4 LINE L1 2687 2876 -3270 307 190 0 0 chr15 4426655 4426713 -81269041 + L1ME LINE L1 5685 5742 -422 1326 99 0 20 chr15 4426833 4427034 -81268720 - L1PA13 LINE L1 -4 6159 5963 2446 198 118 39 chr15 4427034 4427218 -81268536 + L1M4 LINE L1 2867 3035 -3111 2359 74 0 16 chr15 4427218 4427530 -81268224 - AluY SINE Alu -4 307 1 2446 198 118 39 chr15 4427530 4428321 -81267433 + L1M4 LINE L1 3035 3919 -2227 22 35 0 0 chr15 4479383 4479412 -81216342 + AT_rich Low_complexity Low_complexity 1 29 0 1504 223 76 3 chr15 4479569 4479936 -81215818 + MER89 LTR ERV1 166 559 0 890 173 162 5 chr15 4480262 4480447 -81215307 + AluJo SINE Alu 81 294 -18 33 25 0 0 chr15 4481134 4481174 -81214580 + AT_rich Low_complexity Low_complexity 1 40 0 1983 157 141 11 chr15 4481225 4481534 -81214220 + MSTB LTR MaLR 3 371 -55 2049 103 65 3 chr15 4481534 4481825 -81213929 - AluSg SINE Alu -1 309 1 1983 157 141 11 chr15 4481825 4481890 -81213864 + MSTB LTR MaLR 371 426 0 36 65 0 49 chr15 4482507 4482630 -81213124 + AT_rich Low_complexity Low_complexity 1 117 0 795 153 13 38 chr15 4482630 4482787 -81212967 - FRAM SINE Alu -26 150 1 2378 165 85 6 chr15 4483084 4483885 -81211869 - L1M2 LINE L1 -536 5755 4895 1340 172 93 26 chr15 4483937 4484205 -81211549 - AluJo SINE Alu -25 287 2 3603 153 38 11 chr15 4484860 4485493 -81210261 - L1MA5 LINE L1 0 6300 5651 2253 174 62 24 chr15 4485733 4486199 -81209555 + MER72 LTR ERV1 239 722 0 1066 151 25 10 chr15 4488118 4488317 -81207437 - MER65A LTR ERV1 0 445 244 1295 183 65 48 chr15 4489236 4489680 -81206074 + MER89 LTR ERV1 9 559 0 401 304 190 27 chr15 4490682 4491051 -81204703 + MLT1J LTR MaLR 83 511 0 22 56 0 0 chr15 4493358 4493394 -81202360 + AT_rich Low_complexity Low_complexity 1 36 0 1169 136 61 24 chr15 4493553 4493766 -81201988 + MER65A LTR ERV1 1 221 -224 22 0 0 0 chr15 4493866 4493888 -81201866 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 4494078 4494101 -81201653 + AT_rich Low_complexity Low_complexity 1 23 0 406 285 65 27 chr15 4494294 4494480 -81201274 + L1ME2 LINE L1 5707 5899 -265 349 262 44 44 chr15 4494526 4494765 -81200989 - L1ME LINE L1 -5007 1076 834 1179 129 0 0 chr15 4494771 4494941 -81200813 - AluSp SINE Alu -7 306 137 557 285 52 22 chr15 4494951 4495065 -81200689 - L1ME LINE L1 -5194 876 767 2062 119 22 19 chr15 4495065 4495377 -81200377 - AluSq SINE Alu 0 313 1 557 285 52 22 chr15 4495377 4495632 -81200122 - L1ME LINE L1 -5303 767 508 2133 142 0 0 chr15 4496445 4496748 -81199006 - AluSq SINE Alu 0 313 11 1378 66 12 0 chr15 4496903 4497069 -81198685 + L1PA7 LINE L1 5985 6152 -2 21 0 0 0 chr15 4497080 4497101 -81198653 + AT_rich Low_complexity Low_complexity 1 21 0 2469 122 98 0 chr15 4497104 4497482 -81198272 + MER4C LTR ERV1 51 465 0 718 283 101 24 chr15 4497482 4498029 -81197725 - L1MCa LINE L1 -3985 2622 2034 6944 140 46 9 chr15 4498041 4499223 -81196531 - Tigger3b DNA MER2_type -1 1230 6 384 284 36 47 chr15 4499388 4499633 -81196121 - L1MCa LINE L1 -4452 2155 1800 * 937 263 25 25 chr15 4499632 4499913 -81195841 + L1M4b LINE L1 400 680 -6179 24 0 0 0 chr15 4500531 4500555 -81195199 + AT_rich Low_complexity Low_complexity 1 24 0 596 248 25 12 chr15 4501021 4501182 -81194572 - MER5A DNA MER1_type -26 163 1 720 143 9 0 chr15 4501243 4501348 -81194406 + AluJb SINE Alu 2 107 -205 2144 165 98 73 chr15 4501715 4502279 -81193475 + MER34C LTR ERV1 1 578 -7 440 277 69 27 chr15 4503326 4503518 -81192236 - MIR SINE MIR -24 238 40 1282 177 53 87 chr15 4504143 4504521 -81191233 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr15 4506800 4506836 -81188918 + (CA)n Simple_repeat Simple_repeat 1 36 0 4797 140 24 40 chr15 4507634 4508067 -81187687 + L1PA14 LINE L1 4343 4781 -1380 2190 104 0 3 chr15 4508067 4508364 -81187390 + AluSx SINE Alu 1 296 -16 4797 140 24 40 chr15 4508364 4509345 -81186409 + L1PA14 LINE L1 4781 5728 -433 3109 97 27 0 chr15 4509445 4509856 -81185898 + L1PA14 LINE L1 5735 6156 -5 1023 173 24 0 chr15 4510228 4510396 -81185358 - FRAM SINE Alu -10 166 1 1609 168 0 42 chr15 4510418 4510727 -81185027 - AluJb SINE Alu -16 296 1 240 111 0 0 chr15 4512087 4512123 -81183631 + (A)n Simple_repeat Simple_repeat 1 36 0 434 288 109 71 chr15 4512185 4512553 -81183201 + L2 LINE L2 2928 3309 -4 2005 112 54 20 chr15 4512628 4512924 -81182830 - AluSx SINE Alu -6 306 1 1721 70 19 0 chr15 4513892 4514105 -81181649 - L1PA7 LINE L1 -3 6151 5935 1953 39 0 4 chr15 4514105 4514334 -81181420 + L1PA7 LINE L1 5718 5945 -209 5692 170 110 78 chr15 4515348 4515924 -81179830 - L1MC3 LINE L1 -7 7778 7222 238 215 0 118 chr15 4515924 4516017 -81179737 - MLT1D LTR MaLR -443 124 43 5692 170 110 78 chr15 4516017 4516891 -81178863 - L1MC3 LINE L1 -563 7222 6187 781 266 113 38 chr15 4516887 4517534 -81178220 + L1ME LINE L1 895 1565 -4515 * 1029 114 60 0 chr15 4517602 4517751 -81178003 - AluSq SINE Alu -12 301 144 2952 117 3 0 chr15 4517751 4518143 -81177611 + MER1A DNA MER1_type 133 525 -4 396 200 0 0 chr15 4518158 4518228 -81177526 - MLT1D LTR MaLR -435 70 1 2465 77 3 0 chr15 4518297 4518596 -81177158 + AluY SINE Alu 1 300 -11 367 282 31 11 chr15 4518786 4518939 -81176815 - L1ME LINE L1 -567 5595 5434 533 289 58 0 chr15 4519140 4519348 -81176406 + L1ME LINE L1 2398 2617 -3463 249 257 95 0 chr15 4520335 4520409 -81175345 - L2 LINE L2 -4 3268 3188 253 185 154 0 chr15 4522429 4522494 -81173260 - MIR3 SINE MIR -48 160 86 849 158 129 0 chr15 4523497 4523668 -81172086 + LOR1b LTR ERV1 1 193 -268 515 136 45 0 chr15 4523669 4523757 -81171997 + LOR1b LTR ERV1 370 461 0 190 328 156 26 chr15 4524298 4524490 -81171264 - L3 LINE CR1 -41 1536 1320 212 322 299 0 chr15 4524626 4524800 -81170954 - MIR SINE MIR 0 262 37 1758 180 59 73 chr15 4526152 4526635 -81169119 + LTR39 LTR ERV1 1 395 -388 230 158 0 0 chr15 4526605 4526643 -81169111 + MER4D LTR ERV1 244 281 -591 * 2105 175 29 11 chr15 4526681 4527058 -81168696 + LTR39 LTR ERV1 400 783 0 517 235 74 20 chr15 4528514 4528663 -81167091 + MER34 LTR ERV1 1 157 -385 941 189 112 58 chr15 4528729 4528988 -81166766 + AluJb SINE Alu 1 273 -39 671 62 0 14 chr15 4529722 4529822 -81165932 - L1P5 LINE L1 -387 5764 5672 3630 12 5 0 chr15 4529830 4530241 -81165513 + L1HS LINE L1 5741 6153 -2 268 43 21 21 chr15 4530246 4530293 -81165461 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 266 358 98 17 chr15 4532846 4533019 -81162735 - MIR SINE MIR -74 188 2 1273 157 50 5 chr15 4533349 4533754 -81162000 + LTR54 LTR ERV1 8 510 0 2063 159 31 48 chr15 4534043 4534464 -81161290 + L1MB3 LINE L1 5761 6174 -9 222 296 0 0 chr15 4536509 4536563 -81159191 + (TG)n Simple_repeat Simple_repeat 1 54 0 1775 171 39 47 chr15 4536921 4537302 -81158452 + MLT1B LTR MaLR 2 379 -11 480 155 0 0 chr15 4537562 4537701 -81158053 + AluS SINE Alu 227 365 0 231 314 35 0 chr15 4538014 4538100 -81157654 + MIR SINE MIR 51 139 -123 331 260 40 20 chr15 4538244 4538344 -81157410 - L2 LINE L2 0 3313 3212 14220 193 17 15 chr15 4539877 4543989 -81151765 + L1PA15 LINE L1 2047 6164 -1 678 299 104 8 chr15 4544299 4544664 -81151090 + L1ME LINE L1 5329 5728 -393 318 209 32 0 chr15 4545496 4545654 -81150100 + CT-rich Low_complexity Low_complexity 1 163 0 204 40 0 0 chr15 4545654 4545679 -81150075 + (CA)n Simple_repeat Simple_repeat 1 25 0 452 286 65 16 chr15 4546231 4546416 -81149338 + MER58A DNA MER1_type 26 219 -5 440 261 0 6 chr15 4546954 4547134 -81148620 + GA-rich Low_complexity Low_complexity 1 179 0 2117 166 119 5 chr15 4547200 4547579 -81148175 - MSTB LTR MaLR -4 422 1 7456 63 11 0 chr15 4547860 4548959 -81146795 - L1PA7 LINE L1 -3 6151 5049 2703 109 12 0 chr15 4548959 4549362 -81146392 + L1P LINE L1 3199 3606 -2540 489 214 10 0 chr15 4549767 4549865 -81145889 - Tigger5 DNA MER2_type 0 2323 2225 228 202 112 56 chr15 4550002 4550091 -81145663 + MIR SINE MIR 61 154 -108 240 266 159 18 chr15 4550114 4550227 -81145527 - MIR SINE MIR -9 253 125 273 226 107 0 chr15 4550983 4551067 -81144687 + L1MDb LINE L1 1013 1105 -5438 2161 138 0 0 chr15 4551081 4551393 -81144361 + AluSx SINE Alu 1 312 0 1991 100 38 0 chr15 4551396 4551657 -81144097 + AluSc SINE Alu 1 271 -38 264 149 0 0 chr15 4551665 4551712 -81144042 + (GA)n Simple_repeat Simple_repeat 2 48 0 3597 229 106 40 chr15 4551716 4553118 -81142636 + L1MDb LINE L1 1067 2560 -3980 44951 36 3 2 chr15 4553130 4559276 -81136478 + L1PA3 LINE L1 1 6154 -1 4802 176 90 10 chr15 4559294 4560981 -81134773 + L1PA16 LINE L1 4352 6166 0 3612 268 36 26 chr15 4560987 4562412 -81133342 + L1MDb LINE L1 2555 3993 -2547 230 263 18 0 chr15 4562449 4562506 -81133248 + L2 LINE L2 3180 3237 -76 2395 175 25 47 chr15 4562514 4563027 -81132727 + MER34B LTR ERV1 1 502 -63 189 147 0 0 chr15 4563065 4563099 -81132655 + MIR SINE MIR 218 251 -11 285 311 59 8 chr15 4563515 4563634 -81132120 + MIR SINE MIR 4 128 -134 258 384 64 5 chr15 4564326 4564545 -81131209 - MIR SINE MIR -20 242 11 257 127 38 51 chr15 4564976 4565055 -81130699 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 186 171 0 0 chr15 4566324 4566365 -81129389 + (CA)n Simple_repeat Simple_repeat 1 41 0 3747 133 33 9 chr15 4567884 4568522 -81127232 + MER39B LTR ERV1 1 653 0 1595 162 87 21 chr15 4568816 4569253 -81126501 + MER31A LTR ERV1 1 542 -1 1767 171 71 149 chr15 4569298 4570084 -81125670 + LTR8A LTR ERV1 1 725 -2 203 178 22 22 chr15 4570349 4570394 -81125360 + L2 LINE L2 3026 3070 -202 259 250 48 48 chr15 4570792 4570896 -81124858 - MER103 DNA DNA -21 145 42 207 100 0 0 chr15 4570939 4570969 -81124785 + (T)n Simple_repeat Simple_repeat 1 30 0 519 238 81 104 chr15 4571991 4572373 -81123381 + L1MC5 LINE L1 6695 6965 -996 386 19 0 19 chr15 4572373 4572425 -81123329 + (GA)n Simple_repeat Simple_repeat 1 51 0 519 238 81 104 chr15 4572425 4572610 -81123144 + L1MC5 LINE L1 6965 7153 -808 1312 216 16 44 chr15 4573094 4573409 -81122345 - AluJo SINE Alu -6 306 1 982 257 120 14 chr15 4574819 4575177 -81120577 + MSTD LTR MaLR 1 396 0 474 120 0 0 chr15 4575426 4575501 -81120253 + (TA)n Simple_repeat Simple_repeat 1 75 0 1035 268 68 78 chr15 4576362 4577247 -81118507 - L1MEc LINE L1 -4110 2286 1411 370 214 0 12 chr15 4577248 4577332 -81118422 + MLT1A2 LTR MaLR 281 363 -11 309 307 84 46 chr15 4577523 4577976 -81117778 + L2 LINE L2 2808 3277 -36 1514 207 13 0 chr15 4578126 4578431 -81117323 - MLT1A1 LTR MaLR -2 363 55 319 280 19 0 chr15 4581435 4581542 -81114212 + L3 LINE CR1 1179 1287 -290 275 276 21 80 chr15 4582251 4582490 -81113264 + L1MC4 LINE L1 7455 7679 -363 406 266 114 45 chr15 4582619 4582909 -81112845 + L1MC4 LINE L1 7732 8041 -1 481 177 146 10 chr15 4583367 4583463 -81112291 - FRAM SINE Alu -25 151 43 613 175 0 10 chr15 4583588 4583691 -81112063 + AluJo SINE Alu 87 188 -124 506 206 10 0 chr15 4583689 4583791 -81111963 - AluJo/FLAM SINE Alu -209 103 1 * 359 265 31 95 chr15 4585209 4585526 -81110228 + L1M4 LINE L1 4896 5192 -954 1145 199 75 39 chr15 4585536 4585817 -81109937 + LTR40a LTR ERVL 229 519 0 252 284 30 67 chr15 4585996 4586130 -81109624 + HAL1 LINE L1 581 709 -1798 259 261 19 45 chr15 4586273 4586430 -81109324 + HAL1 LINE L1 926 1078 -1429 366 271 66 22 chr15 4586813 4586994 -81108760 + HAL1 LINE L1 1661 1849 -658 360 323 105 28 chr15 4587235 4587515 -81108239 + HAL1 LINE L1 2121 2435 -72 2111 143 0 0 chr15 4587515 4587809 -81107945 - AluSx SINE Alu -18 294 1 360 323 105 28 chr15 4587809 4587881 -81107873 + HAL1 LINE L1 2435 2500 -7 324 286 161 0 chr15 4589311 4589423 -81106331 - MIR SINE MIR -96 166 37 21 0 0 0 chr15 4590322 4590343 -81105411 + AT_rich Low_complexity Low_complexity 1 21 0 2386 244 63 49 chr15 4590351 4590677 -81105077 + L1MD1 LINE L1 27 347 -6193 2455 91 0 0 chr15 4590677 4590986 -81104768 - AluY SINE Alu -2 309 1 2386 244 63 49 chr15 4590986 4592016 -81103738 + L1MD1 LINE L1 347 1558 -4982 1792 240 41 21 chr15 4592067 4592683 -81103071 + L1M4 LINE L1 3544 4171 -1975 280 48 71 0 chr15 4592684 4592726 -81103028 + MER31A LTR ERV1 1 45 -440 1759 209 63 23 chr15 4592730 4593251 -81102503 + L1MCb LINE L1 603 1144 -4901 1432 245 57 33 chr15 4593304 4593843 -81101911 + L1M4 LINE L1 4431 4986 -1160 2532 37 0 3 chr15 4593843 4594142 -81101612 + AluY SINE Alu 1 298 -13 1432 245 57 33 chr15 4594142 4594177 -81101577 + L1M4 LINE L1 4986 5019 -1127 249 136 0 34 chr15 4594292 4594351 -81101403 + L1M LINE L1 5304 5360 -999 * 1759 270 46 16 chr15 4594337 4595138 -81100616 + L1MD1 LINE L1 4861 5685 -855 1423 246 35 22 chr15 4595138 4595541 -81100213 - MLT1D LTR MaLR -90 415 8 2063 183 27 11 chr15 4595544 4595992 -81099762 + L1MD1 LINE L1 6182 6636 0 258 253 40 0 chr15 4596977 4597052 -81098702 - MIR SINE MIR -111 151 74 324 196 0 0 chr15 4597241 4597297 -81098457 - MLT1D LTR MaLR -119 386 331 7262 235 55 51 chr15 4597309 4600520 -81095234 - L1M4 LINE L1 -1298 5346 2149 1981 128 0 11 chr15 4600520 4600830 -81094924 - AluY SINE Alu 0 308 2 7262 235 55 51 chr15 4600830 4601338 -81094416 - L1M4 LINE L1 -4495 2149 1644 778 0 31 0 chr15 4601338 4601435 -81094319 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 7262 235 55 51 chr15 4601435 4602979 -81092775 - L1M4 LINE L1 -5000 1644 16 1630 196 0 7 chr15 4603651 4603931 -81091823 + AluJo SINE Alu 1 278 -34 219 36 0 0 chr15 4603937 4603965 -81091789 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1549 168 80 18 chr15 4603984 4604270 -81091484 + AluJb SINE Alu 9 312 0 2068 101 5 69 chr15 4604416 4604791 -81090963 + THE1A LTR MaLR 5 355 0 1651 219 83 59 chr15 4605260 4605836 -81089918 + LTR68 LTR ERV1 21 610 -130 459 214 68 48 chr15 4606187 4606439 -81089315 + HAL1 LINE L1 899 1155 -1352 3999 184 73 12 chr15 4606565 4607376 -81088378 - MER21B LTR ERV1 -3 860 1 2517 162 30 48 chr15 4607438 4607962 -81087792 + MLT2B3 LTR ERVL 1 515 -39 258 105 0 0 chr15 4607987 4608025 -81087729 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 607 247 77 13 chr15 4608095 4608330 -81087424 + HAL1 LINE L1 1338 1587 -920 329 245 47 0 chr15 4608814 4608920 -81086834 + HAL1 LINE L1 2287 2397 -110 2110 122 0 7 chr15 4611080 4611406 -81084348 - AluSg SINE Alu 0 310 1 1521 236 29 52 chr15 4613878 4614649 -81081105 + L1MB3 LINE L1 2798 3550 -2596 * 2521 158 31 8 chr15 4614646 4615346 -81080408 + L1M1 LINE L1 4899 5614 -686 5995 204 40 25 chr15 4615402 4617976 -81077778 + L1MB3 LINE L1 3554 6173 -10 908 136 0 0 chr15 4618821 4618953 -81076801 - FLAM_C SINE Alu -11 132 1 2286 178 38 2 chr15 4619522 4619949 -81075805 - L1MB3 LINE L1 -120 6063 5622 554 279 47 12 chr15 4620668 4620840 -81074914 + MIR SINE MIR 37 214 -48 1878 178 67 13 chr15 4621403 4621791 -81073963 - L1MA5 LINE L1 -1 6299 5891 1871 179 68 0 chr15 4623435 4623771 -81071983 - MLT1A1 LTR MaLR -6 359 1 517 280 45 40 chr15 4624524 4624724 -81071030 + MIR SINE MIR 32 232 -30 3606 80 35 8 chr15 4624778 4625266 -81070488 - L1MA2 LINE L1 -2 6302 5802 365 259 0 0 chr15 4625309 4625390 -81070364 + MIR SINE MIR 34 114 -148 227 233 0 33 chr15 4626616 4626676 -81069078 - Charlie8 DNA MER1_type 0 2417 2360 1541 290 36 63 chr15 4626953 4627557 -81068197 + MLT1E LTR MaLR 1 588 -5 1479 236 44 35 chr15 4627610 4628064 -81067690 - MER39 LTR ERV1 0 707 250 207 336 71 18 chr15 4628574 4628687 -81067067 + L3 LINE CR1 618 736 -841 512 297 102 25 chr15 4629029 4629265 -81066489 + MIR SINE MIR 9 262 0 21 0 0 0 chr15 4629271 4629292 -81066462 + AT_rich Low_complexity Low_complexity 1 21 0 270 303 311 8 chr15 4629311 4629443 -81066311 + L3 LINE CR1 1282 1453 -124 625 264 25 0 chr15 4629856 4630015 -81065739 + MIR SINE MIR 28 190 -72 1454 192 17 118 chr15 4630016 4630422 -81065332 - MLT1A1 LTR MaLR 0 365 1 222 219 0 0 chr15 4630436 4630477 -81065277 + CT-rich Low_complexity Low_complexity 2 42 0 1757 200 63 25 chr15 4630727 4631173 -81064581 + MER31B LTR ERV1 1 543 0 22 88 0 0 chr15 4632739 4632796 -81062958 + AT_rich Low_complexity Low_complexity 1 57 0 239 200 178 30 chr15 4632796 4632931 -81062823 + L1MC/D LINE L1 3030 3184 -2962 2666 230 82 26 chr15 4633044 4634163 -81061591 + L1MC/D LINE L1 4399 5587 -772 216 0 0 0 chr15 4634163 4634187 -81061567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2666 230 82 26 chr15 4634187 4634221 -81061533 + L1MC/D LINE L1 5587 5618 -741 4498 246 126 58 chr15 4635440 4635780 -81059974 + L1MDa LINE L1 4 319 -6221 2013 113 10 7 chr15 4635780 4636071 -81059683 - AluSx SINE Alu -20 292 1 4498 246 126 58 chr15 4636071 4638954 -81056800 + L1MDa LINE L1 319 3432 -3108 727 174 0 9 chr15 4638955 4639070 -81056684 + 5S rRNA rRNA 2 115 -6 2245 169 125 5 chr15 4640365 4640773 -81054981 + MSTB2 LTR MaLR 1 457 0 869 260 174 0 chr15 4640948 4641229 -81054525 + MLT1F LTR MaLR 213 542 0 289 276 46 0 chr15 4641280 4641367 -81054387 - L2 LINE L2 -1 3312 3222 764 224 167 5 chr15 4641944 4642136 -81053618 + MER58A DNA MER1_type 2 224 0 2608 195 43 4 chr15 4642559 4643118 -81052636 + LTR69 LTR ERVL 1 581 -7 1839 211 49 0 chr15 4644152 4644560 -81051194 - L1MA6 LINE L1 0 6300 5873 204 254 16 0 chr15 4645135 4645198 -81050556 + (TA)n Simple_repeat Simple_repeat 2 65 0 1172 260 14 33 chr15 4645936 4646302 -81049452 + L1MEc LINE L1 36 394 -6002 * 3085 226 53 40 chr15 4646288 4647366 -81048388 + L1M4 LINE L1 2922 4013 -2133 1128 185 28 5 chr15 4647371 4647587 -81048167 + AluJo SINE Alu 79 299 -13 3975 222 93 18 chr15 4647593 4647623 -81048131 + L1M4 LINE L1 4023 4049 -2097 2278 120 0 0 chr15 4647623 4647931 -81047823 + AluSq SINE Alu 1 308 -5 3975 222 93 18 chr15 4647931 4648849 -81046905 + L1M4 LINE L1 4049 5076 -1070 2268 116 3 0 chr15 4648849 4649159 -81046595 + AluSp SINE Alu 3 313 0 3975 222 93 18 chr15 4649159 4649367 -81046387 + L1M4 LINE L1 5076 5267 -879 456 324 17 12 chr15 4649555 4649728 -81046026 - LTR10B LTR ERV1 0 505 332 1659 283 39 27 chr15 4650054 4650838 -81044916 - HERVI LTR ERV1 -1788 5836 4091 1194 59 13 0 chr15 4651070 4651222 -81044532 - AluY SINE Alu -4 307 154 23 68 0 0 chr15 4653386 4653430 -81042324 + AT_rich Low_complexity Low_complexity 1 44 0 257 135 19 0 chr15 4653448 4653500 -81042254 + (TA)n Simple_repeat Simple_repeat 2 54 0 341 312 127 12 chr15 4654134 4654307 -81041447 - HAL1 LINE L1 -605 1902 1710 842 168 15 0 chr15 4654338 4654475 -81041279 + MER2 DNA MER2_type 1 139 -206 282 242 45 15 chr15 4654470 4654536 -81041218 + MER2 DNA MER2_type 278 345 0 * 1904 171 68 11 chr15 4654567 4654936 -81040818 + MLT1B LTR MaLR 1 390 0 624 232 45 68 chr15 4655935 4656155 -81039599 + MER87 LTR ERV1 174 388 -153 2372 66 13 0 chr15 4656158 4656459 -81039295 - AluY SINE Alu -6 305 1 1276 162 42 37 chr15 4656460 4656701 -81039053 - MLT1D LTR MaLR -263 242 1 230 51 51 0 chr15 4657710 4657749 -81038005 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1812 197 70 12 chr15 4657828 4658173 -81037581 + MLT1A1 LTR MaLR 1 365 0 284 309 62 0 chr15 4659822 4659903 -81035851 + MIR3 SINE MIR 108 193 -15 2182 98 18 0 chr15 4661891 4662176 -81033578 + AluSx SINE Alu 1 290 -22 423 250 9 9 chr15 4662213 4662321 -81033433 + MER3 DNA MER1_type 78 185 -24 387 41 0 0 chr15 4663771 4663820 -81031934 + (TC)n Simple_repeat Simple_repeat 2 50 0 297 0 0 0 chr15 4663819 4663852 -81031902 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2177 152 6 30 chr15 4664649 4665010 -81030744 + THE1A LTR MaLR 4 355 0 468 181 0 0 chr15 4665381 4665453 -81030301 + AluJ/FLAM SINE Alu 2 73 -239 1493 197 100 3 chr15 4865753 4866228 -80829526 + L1MC4 LINE L1 5498 5782 -384 920 229 103 10 chr15 4866033 4866335 -80829419 + L1MB7 LINE L1 5846 6175 -9 * 2233 105 3 0 chr15 4866708 4867002 -80828752 - AluSx SINE Alu -17 295 1 1902 163 0 3 chr15 4867443 4867743 -80828011 + AluSx SINE Alu 1 299 -13 389 314 70 13 chr15 4867794 4868023 -80827731 - MIR SINE MIR 0 262 21 226 292 45 0 chr15 4868010 4868099 -80827655 + MIR3 SINE MIR 94 186 -22 * 2044 102 74 34 chr15 4868680 4869004 -80826750 + MER1B DNA MER1_type 1 337 0 3634 200 56 122 chr15 4869520 4869996 -80825758 + L1M2 LINE L1 2296 2802 -3344 1743 184 14 3 chr15 4869996 4870279 -80825475 - AluJo SINE Alu -20 292 7 3634 200 56 122 chr15 4870279 4870409 -80825345 + L1M2 LINE L1 2802 2939 -3207 2306 114 0 0 chr15 4870409 4870706 -80825048 - AluSg SINE Alu -13 297 1 3634 200 56 122 chr15 4870706 4871596 -80824158 + L1M2 LINE L1 2939 3695 -2451 861 156 4 24 chr15 4871596 4871841 -80823913 + GA-rich Low_complexity Low_complexity 1 240 0 292 141 13 103 chr15 4871841 4871919 -80823835 + L1P LINE L1 3673 3743 -2403 * 6443 20 0 0 chr15 4871917 4872654 -80823100 - L1PA3 LINE L1 -1137 5009 4273 7918 23 0 0 chr15 4872657 4873804 -80821950 + L1PA3 LINE L1 5005 6151 -4 8773 167 17 11 chr15 4873806 4875825 -80819929 + L1M2 LINE L1 3736 5764 -548 1192 211 53 43 chr15 4876038 4876091 -80819663 + L1MEc LINE L1 1925 1976 -4420 1896 132 0 51 chr15 4876091 4876402 -80819352 + AluY SINE Alu 2 296 -15 1192 211 53 43 chr15 4876402 4876746 -80819008 + L1MEc LINE L1 1976 2326 -4070 1491 128 21 4 chr15 4876755 4876989 -80818765 - Tigger5 DNA MER2_type -1 2322 2085 339 219 0 0 chr15 4877008 4877072 -80818682 - Tigger5 DNA MER2_type -2259 64 1 2160 108 10 3 chr15 4877117 4877412 -80818342 + AluSq SINE Alu 1 297 -16 1958 232 80 5 chr15 4877448 4878086 -80817668 + L1MEc LINE L1 2356 3000 -3215 1593 182 29 66 chr15 4878094 4878474 -80817280 - MLT1A2 LTR MaLR -8 366 1 239 180 0 0 chr15 4878474 4878524 -80817230 + L1MEc LINE L1 2996 3045 -3170 624 248 33 26 chr15 4878534 4878687 -80817067 - MER58B DNA MER1_type 0 341 188 6729 232 57 23 chr15 4878711 4880717 -80815037 + L1MEc LINE L1 3050 5123 -1092 2061 132 0 4 chr15 4881338 4881618 -80814136 - AluSx SINE Alu -33 279 1 5889 150 17 21 chr15 4881895 4882933 -80812821 + L1PB3 LINE L1 4125 5166 -988 2106 106 0 14 chr15 4882933 4883217 -80812537 + AluSx SINE Alu 1 280 -32 558 0 0 0 chr15 4883220 4883282 -80812472 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 5889 150 17 21 chr15 4883282 4884276 -80811478 + L1PB3 LINE L1 5168 6152 -2 22 0 0 0 chr15 4886182 4886204 -80809550 + AT_rich Low_complexity Low_complexity 1 22 0 2459 255 97 19 chr15 4886647 4887451 -80808303 - L1M4 LINE L1 -5675 867 1 889 169 20 0 chr15 4888435 4888583 -80807171 - FRAM SINE Alu -25 151 1 2332 109 27 29 chr15 4892899 4893275 -80802479 + THE1C LTR MaLR 1 375 0 369 289 8 16 chr15 4893624 4893745 -80802009 + (CATA)n Simple_repeat Simple_repeat 1 120 0 522 191 0 53 chr15 4893747 4893935 -80801819 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 180 200 0 0 chr15 4893958 4893998 -80801756 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 822 163 0 33 chr15 4896264 4896417 -80799337 + FAM SINE Alu 1 49 0 2093 117 11 0 chr15 4896424 4896731 -80799023 + AluSp SINE Alu 1 310 0 2007 86 7 15 chr15 4897431 4897700 -80798054 - AluSx SINE Alu -7 305 39 1940 151 3 20 chr15 4897713 4898017 -80797737 - AluJo SINE Alu -13 299 1 4511 206 67 14 chr15 4898032 4898995 -80796759 - L1MB4 LINE L1 -1 6179 5268 1862 172 14 0 chr15 4898995 4899291 -80796463 - AluJb SINE Alu -12 300 1 4511 206 67 14 chr15 4899291 4900429 -80795325 - L1MB4 LINE L1 -912 5268 3964 396 285 111 12 chr15 4900661 4900833 -80794921 + MER5A DNA MER1_type 1 189 0 924 271 93 22 chr15 4901364 4901815 -80793939 + LTR33 LTR ERVL 37 519 -2 987 169 94 155 chr15 4902438 4902916 -80792838 + L1MEc LINE L1 1744 2192 -4204 1386 231 41 66 chr15 4903022 4903581 -80792173 + L1MEc LINE L1 2154 2668 -3547 1975 132 0 44 chr15 4905471 4905809 -80789945 - AluSx SINE Alu 0 325 1 616 232 58 0 chr15 4906300 4906455 -80789299 - L1ME3A LINE L1 -228 5942 5779 8123 212 36 37 chr15 4906455 4907856 -80787898 - L1MDa LINE L1 -1829 4815 3403 1925 162 7 76 chr15 4907856 4908094 -80787660 - MLT1B LTR MaLR 0 390 192 2306 112 3 0 chr15 4908094 4908399 -80787355 - AluSg SINE Alu -4 306 1 1925 162 7 76 chr15 4908399 4908579 -80787175 - MLT1B LTR MaLR -198 192 1 8123 212 36 37 chr15 4908579 4909357 -80786397 - L1MDa LINE L1 -3241 3403 2626 277 250 0 0 chr15 4909411 4909471 -80786283 - L1MDa LINE L1 -5833 709 650 258 165 46 9 chr15 4910048 4910157 -80785597 + GA-rich Low_complexity Low_complexity 2 114 0 295 236 76 35 chr15 4910405 4910549 -80785205 + MIR SINE MIR 113 262 0 762 284 25 80 chr15 4911826 4912315 -80783439 + L1ME4a LINE L1 5613 6074 -47 1731 175 3 7 chr15 4913367 4913659 -80782095 - AluJb SINE Alu -21 291 1 1356 180 73 38 chr15 4913849 4914138 -80781616 - AluJo SINE Alu -13 299 1 2403 82 3 31 chr15 4915330 4915649 -80780105 - AluSg SINE Alu 0 310 1 1008 106 35 0 chr15 4916384 4916554 -80779200 + MER20 DNA MER1_type 44 219 0 2865 117 144 14 chr15 4916815 4917377 -80778377 - LTR24C LTR ERV1 0 635 1 852 140 129 0 chr15 4918510 4918681 -80777073 - MER3 DNA MER1_type -16 193 1 2289 116 0 0 chr15 4919177 4919478 -80776276 + AluSx SINE Alu 10 310 -2 269 286 92 0 chr15 4922338 4922436 -80773318 - L2 LINE L2 -5 3308 3202 182 269 167 0 chr15 4924071 4924149 -80771605 + L2 LINE L2 3220 3310 -3 269 258 11 65 chr15 4924171 4924357 -80771397 + (TG)n Simple_repeat Simple_repeat 1 176 0 428 270 51 15 chr15 4926064 4926260 -80769494 - L1MCc LINE L1 -5080 1343 1141 270 301 29 19 chr15 4926545 4926648 -80769106 - L1MCc LINE L1 -5702 720 617 228 188 24 35 chr15 4928866 4928951 -80766803 + CT-rich Low_complexity Low_complexity 3 86 0 385 273 128 14 chr15 4929048 4929325 -80766429 - MER39 LTR ERV1 -4 642 397 29 0 0 0 chr15 4931336 4931365 -80764389 + AT_rich Low_complexity Low_complexity 1 29 0 1707 166 3 14 chr15 4931370 4931659 -80764095 - AluJo SINE Alu -24 288 3 303 269 10 10 chr15 4931711 4931815 -80763939 + MER69 DNA AcHobo 2422 2525 -1 1518 198 106 25 chr15 4932408 4932767 -80762987 - MLT1B LTR MaLR 0 390 3 184 252 15 114 chr15 4933654 4933785 -80761969 + MIR SINE MIR 65 182 -80 433 240 79 104 chr15 4934446 4934800 -80760954 - MER68 LTR ERV1 -150 412 68 246 47 0 70 chr15 4935552 4935595 -80760159 - LTR10C LTR ERV1 -440 151 112 815 195 31 22 chr15 4935896 4936171 -80759583 - L1MC/D LINE L1 -743 5403 5188 243 100 25 0 chr15 4936181 4936221 -80759533 - Alu SINE Alu -262 41 1 2130 130 3 7 chr15 4936221 4936520 -80759234 - AluSx SINE Alu -14 298 1 346 261 109 51 chr15 4936523 4936661 -80759093 - L1MC/D LINE L1 -1015 5131 4986 678 165 0 0 chr15 4936662 4936771 -80758983 - FRAM SINE Alu -5 171 63 2077 161 29 5 chr15 4939032 4939411 -80756343 - MLT1B LTR MaLR 0 390 3 270 252 8 138 chr15 4939923 4939979 -80755775 - MIR SINE MIR -128 134 101 2331 67 3 33 chr15 4939979 4940279 -80755475 - AluY SINE Alu -20 291 1 270 252 8 138 chr15 4940279 4940345 -80755409 - MIR SINE MIR -161 101 28 307 279 73 50 chr15 4940688 4940867 -80754887 + MIR SINE MIR 58 240 -22 2213 125 0 0 chr15 4941726 4942021 -80753733 + AluSg SINE Alu 1 295 -15 1608 59 0 0 chr15 4942955 4943164 -80752590 + AluSg/x SINE Alu 98 306 0 222 314 157 7 chr15 4943355 4943508 -80752246 - MER5B DNA MER1_type 0 178 3 635 237 63 5 chr15 4943536 4943726 -80752028 + L1MA4 LINE L1 6086 6286 -14 4679 265 74 23 chr15 4945576 4947290 -80748464 + L1MEc LINE L1 38 1845 -4551 2403 73 0 13 chr15 4947290 4947591 -80748163 + AluY SINE Alu 1 297 -14 4679 265 74 23 chr15 4947591 4947641 -80748113 + L1MEc LINE L1 1845 1891 -4505 661 209 70 50 chr15 4948235 4948436 -80747318 + ORSL DNA AcHobo 30 234 -41 2376 71 20 3 chr15 4950208 4950504 -80745250 - AluY SINE Alu -8 303 3 2287 226 81 59 chr15 4951046 4952096 -80743658 - L1MC/D LINE L1 -1272 4874 3802 892 235 35 48 chr15 4952090 4952380 -80743374 - L1MC/D LINE L1 -3101 3045 2753 * 396 0 0 0 chr15 4952380 4952424 -80743330 + (TG)n Simple_repeat Simple_repeat 1 44 0 1995 141 0 0 chr15 4952424 4952701 -80743053 - AluSx SINE Alu -33 279 3 892 235 35 48 chr15 4952701 4952784 -80742970 - L1MC/D LINE L1 -3391 2755 2676 4771 59 2 7 chr15 4953353 4953947 -80741807 - LTR10C LTR ERV1 0 591 1 374 212 59 12 chr15 4953989 4954074 -80741680 + L2 LINE L2 3222 3310 -3 2258 81 28 3 chr15 4954376 4954661 -80741093 - AluSg SINE Alu -18 292 1 491 305 53 0 chr15 4955960 4956111 -80739643 - MIR SINE MIR -35 227 69 730 222 116 81 chr15 4956276 4956646 -80739108 + MLT1D LTR MaLR 1 383 -122 186 43 0 0 chr15 4956948 4956971 -80738783 + (AGCTG)n Simple_repeat Simple_repeat 2 24 0 381 305 6 0 chr15 4957241 4957418 -80738336 + (TG)n Simple_repeat Simple_repeat 2 179 0 303 280 5 0 chr15 4957436 4957638 -80738116 + (TG)n Simple_repeat Simple_repeat 1 203 0 776 85 78 8 chr15 4960689 4960818 -80734936 - L1MA9 LINE L1 -382 5930 5793 279 114 0 0 chr15 4960818 4960862 -80734892 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 260 26 13 chr15 4960965 4961196 -80734558 - L1M4 LINE L1 -2823 3323 3090 355 227 57 34 chr15 4961196 4961284 -80734470 + L1M LINE L1 5308 5397 -765 2213 109 0 3 chr15 4961289 4961615 -80734139 + AluSx SINE Alu 1 325 0 226 274 27 14 chr15 4962785 4962858 -80732896 - MER5A DNA MER1_type -34 155 82 308 172 0 17 chr15 4962871 4962929 -80732825 - MLT1I LTR MaLR -7 402 346 3621 250 83 22 chr15 4963235 4964943 -80730811 - L1MEc LINE L1 -2392 3823 2060 369 253 0 0 chr15 4964946 4965029 -80730725 - L1MEc LINE L1 -4371 2025 1943 225 98 59 20 chr15 4965416 4965467 -80730287 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 38 39 0 0 chr15 4965536 4965588 -80730166 + AT_rich Low_complexity Low_complexity 1 52 0 186 71 0 0 chr15 4965588 4965616 -80730138 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 7684 44 14 0 chr15 4965620 4966643 -80729111 - L1PA7 LINE L1 -13 6141 5114 2039 119 0 11 chr15 4966643 4966928 -80728826 - AluSx SINE Alu -11 301 20 357 43 0 0 chr15 4966930 4966977 -80728777 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 195 274 124 66 chr15 4967302 4967543 -80728211 - L2 LINE L2 -820 2494 2240 2331 52 0 0 chr15 4969359 4969628 -80726126 - L1PA5 LINE L1 -3 6151 5883 183 322 69 75 chr15 4970083 4970257 -80725497 - MIR SINE MIR -30 232 60 205 250 73 0 chr15 4971100 4971168 -80724586 - MIR SINE MIR -69 139 67 2268 99 3 0 chr15 4971209 4971503 -80724251 - AluSp SINE Alu -18 295 1 428 143 0 39 chr15 4971798 4971875 -80723879 - AluJ/FLAM SINE Alu -221 91 18 420 20 0 0 chr15 4973409 4973458 -80722296 + (TG)n Simple_repeat Simple_repeat 1 49 0 2652 97 26 3 chr15 4973458 4973810 -80721944 + L1PB1 LINE L1 5792 6151 0 1947 150 6 13 chr15 4974590 4974903 -80720851 + AluSx SINE Alu 2 312 0 2120 127 0 10 chr15 4977890 4978189 -80717565 - AluSx SINE Alu -16 296 1 218 292 14 0 chr15 4978238 4978310 -80717444 + (ATATG)n Simple_repeat Simple_repeat 3 75 0 908 266 117 5 chr15 4978475 4978800 -80716954 - L1MD2 LINE L1 0 6166 5819 2022 133 13 3 chr15 4978804 4979112 -80716642 + AluJb SINE Alu 1 311 -1 528 295 18 26 chr15 4979123 4979350 -80716404 - L1MD2 LINE L1 -455 5711 5487 3794 142 30 2 chr15 4980305 4980891 -80714863 - MER39B LTR ERV1 -3 650 43 3152 111 9 2 chr15 4980891 4981322 -80714432 - MER57B LTR ERV1 0 434 1 3794 142 30 2 chr15 4981322 4981362 -80714392 - MER39B LTR ERV1 -610 43 6 327 172 0 0 chr15 4981536 4981594 -80714160 - MER57B LTR ERV1 -376 58 1 344 48 0 0 chr15 4981594 4981636 -80714118 - MER39B LTR ERV1 -608 45 4 * 837 251 39 39 chr15 4981636 4981935 -80713819 - MER46C DNA MER2_type -39 299 1 266 214 66 88 chr15 4982973 4983155 -80712599 - LTR8A LTR ERV1 -53 674 497 659 89 50 0 chr15 4983289 4983390 -80712364 - AluSp SINE Alu -206 107 2 1651 138 57 40 chr15 4983488 4983786 -80711968 + AluSx SINE Alu 5 307 -5 439 279 44 33 chr15 4983812 4984065 -80711689 + L1MA10 LINE L1 5915 6321 0 2403 232 29 9 chr15 4984837 4985502 -80710252 - L1M4c LINE L1 -3181 3201 2524 381 304 60 36 chr15 4985514 4986002 -80709752 - L1M4c LINE L1 -3947 2437 1990 1113 133 12 6 chr15 4986006 4986179 -80709575 + Tigger2 DNA MER2_type 1 174 -2544 5666 123 13 54 chr15 4986180 4987582 -80708172 + L1PA13 LINE L1 4795 6159 -4 297 68 0 0 chr15 4987662 4987706 -80708048 + (CA)n Simple_repeat Simple_repeat 2 45 0 3397 149 53 0 chr15 4987726 4988289 -80707465 + Tigger2 DNA MER2_type 165 757 -1961 738 99 0 0 chr15 4988343 4988454 -80707300 + Tigger2 DNA MER2_type 2461 2571 -147 1331 168 4 9 chr15 4988455 4988681 -80707073 + AluJb SINE Alu 72 296 -16 930 176 7 0 chr15 4988683 4988836 -80706918 + Tigger2 DNA MER2_type 2561 2714 -4 210 37 0 0 chr15 4988839 4988866 -80706888 + (TG)n Simple_repeat Simple_repeat 2 28 0 1674 255 63 74 chr15 4988866 4989923 -80705831 - L1M4c LINE L1 -4573 1811 766 877 236 31 49 chr15 4989986 4990344 -80705410 - L1M4 LINE L1 -3738 3219 2869 522 211 0 0 chr15 4990330 4990425 -80705329 - L1M4 LINE L1 -5723 1136 1042 * 4491 137 3 13 chr15 4990436 4991124 -80704630 - L1MC1 LINE L1 -17 6316 5636 523 343 53 20 chr15 4992686 4992931 -80702823 + MIR SINE MIR 10 262 0 9002 183 31 2 chr15 4993769 4996189 -80699565 - L1PA15 LINE L1 0 6165 3681 561 68 0 0 chr15 4996189 4996263 -80699491 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 9002 183 31 2 chr15 4996263 4996293 -80699461 - L1PA15 LINE L1 -2484 3681 3653 432 232 20 10 chr15 4996500 4996599 -80699155 + L1MEd LINE L1 654 753 -5366 4876 229 87 50 chr15 4996723 4998245 -80697509 - L1MC4a LINE L1 -1 7807 6229 2030 142 49 30 chr15 4998258 4998624 -80697130 + MSTB1 LTR MaLR 1 373 -59 1243 166 45 14 chr15 4998625 4998848 -80696906 - AluJb SINE Alu -1 311 82 354 88 53 0 chr15 4998848 4998905 -80696849 + MSTB1 LTR MaLR 371 430 -2 2475 279 81 32 chr15 4998910 4999079 -80696675 - L1MC4a LINE L1 -755 5391 5232 2254 110 7 3 chr15 4999079 4999388 -80696366 - AluSg SINE Alu 0 310 1 2475 279 81 32 chr15 4999388 5000997 -80694757 - L1MC4a LINE L1 -914 5232 4296 2286 204 58 49 chr15 5001029 5001583 -80694171 + MER68 LTR ERV1 4 562 0 255 242 8 94 chr15 5001593 5001721 -80694033 - L1P LINE L1 -2082 4064 3948 3788 141 10 7 chr15 5001825 5002421 -80693333 - LTR8A LTR ERV1 -129 598 1 5024 138 65 32 chr15 5002546 5002931 -80692823 - MER4D LTR ERV1 0 903 532 642 24 0 24 chr15 5002931 5003013 -80692741 - L1PA2 LINE L1 0 6155 6076 5024 138 65 32 chr15 5003013 5003501 -80692253 - MER4D LTR ERV1 -371 532 1 312 120 0 0 chr15 5003744 5003794 -80691960 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 2953 216 41 33 chr15 5003923 5004748 -80691006 - L1MB7 LINE L1 0 6682 5851 402 143 11 66 chr15 5007070 5007161 -80688593 + L1ME LINE L1 5374 5459 -703 2273 259 47 29 chr15 5008640 5009503 -80686251 + L1ME3A LINE L1 5089 5971 -199 240 238 48 32 chr15 5009984 5010047 -80685707 + MIR SINE MIR 167 230 -32 245 374 9 9 chr15 5010959 5011066 -80684688 + MIR SINE MIR 25 131 -77 286 124 11 56 chr15 5012550 5012639 -80683115 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 664 180 81 62 chr15 5012652 5012730 -80683024 - L1MB4 LINE L1 -12 6168 6093 1519 200 102 31 chr15 5012730 5013150 -80682604 + LTR7 LTR ERV1 1 450 0 664 180 81 62 chr15 5013150 5013282 -80682472 - L1MB4 LINE L1 -87 6093 5954 1420 233 76 68 chr15 5013283 5014102 -80681652 - L1MB7 LINE L1 -992 5652 620 210 339 64 78 chr15 5014438 5014656 -80681098 + L2 LINE L2 3027 3241 -31 2315 77 10 13 chr15 5014981 5015280 -80680474 + AluSq SINE Alu 1 321 0 187 43 0 0 chr15 5015280 5015303 -80680451 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2736 221 30 25 chr15 5016067 5017352 -80678402 - L1ME1 LINE L1 -273 5893 4601 460 281 0 0 chr15 5017353 5017474 -80678280 + L1ME1 LINE L1 4462 4582 -1564 1760 268 47 38 chr15 5017483 5018017 -80677737 + MLT1E2 LTR MaLR 20 558 -68 622 255 25 12 chr15 5018032 5018275 -80677479 - L1ME1 LINE L1 -2811 3335 3090 2213 211 14 53 chr15 5018287 5018368 -80677386 + L1ME1 LINE L1 5314 5397 -769 2380 117 0 0 chr15 5018368 5018676 -80677078 + AluSx SINE Alu 1 308 -4 2213 211 14 53 chr15 5018676 5019157 -80676597 + L1ME1 LINE L1 5397 5854 -312 1865 90 4 0 chr15 5019157 5019391 -80676363 - AluSp SINE Alu -16 297 63 1296 274 60 49 chr15 5019495 5020491 -80675263 - L1M4 LINE L1 -2238 3908 2902 1995 148 51 21 chr15 5020644 5021017 -80674737 + MSTB1 LTR MaLR 1 384 -48 327 272 158 38 chr15 5021017 5021201 -80674553 - HAL1b LINE L1 -832 516 311 1662 123 8 11 chr15 5021477 5021745 -80674009 - L1MA4 LINE L1 -16 6284 6018 2475 83 0 0 chr15 5022611 5022912 -80672842 - AluSx SINE Alu -11 301 1 241 128 0 0 chr15 5024260 5024307 -80671447 + Alu SINE Alu 261 307 -1 245 276 60 26 chr15 5026043 5026159 -80669595 - L1ME LINE L1 -312 5809 5690 316 263 91 10 chr15 5026365 5026464 -80669290 - LTR33 LTR ERVL -313 208 102 790 342 75 37 chr15 5026851 5027188 -80668566 - ERVL LTR ERVL -462 5302 4979 4208 109 45 5 chr15 5027188 5027767 -80667987 - LTR43 LTR ERV1 0 602 1 790 342 75 37 chr15 5027767 5028187 -80667567 - ERVL LTR ERVL -785 4979 4516 518 231 0 0 chr15 5028354 5028461 -80667293 - MLT1D LTR MaLR -324 181 75 542 222 194 0 chr15 5028461 5028605 -80667149 - MLT1D LTR MaLR 0 505 334 1357 213 94 3 chr15 5028606 5028926 -80666828 - L1MDa LINE L1 -2253 4153 3805 2336 138 36 20 chr15 5029175 5029531 -80666223 - THE1B LTR MaLR -2 362 1 8161 86 15 85 chr15 5029536 5030582 -80665172 - THE1B-int LTR MaLR -6 1574 634 2314 97 0 0 chr15 5030582 5030881 -80664873 - AluY SINE Alu -12 299 1 8161 86 15 85 chr15 5030881 5031132 -80664622 - THE1B-int LTR MaLR -946 634 367 2964 66 8 0 chr15 5032128 5032506 -80663248 - THE1B-int LTR MaLR -1199 381 1 401 80 0 0 chr15 5032506 5032556 -80663198 - THE1B LTR MaLR 0 364 315 595 237 10 42 chr15 5032557 5032965 -80662789 + BSR/Beta Satellite Satellite 1 394 -60 598 199 35 59 chr15 5032984 5033201 -80662553 + BSR/Beta Satellite Satellite 1 211 -38 5739 93 94 29 chr15 5033597 5034683 -80661071 - MER11A LTR ERVK -5 1261 1 3396 271 28 9 chr15 5034690 5036034 -80659720 - L1MDa LINE L1 -2619 3787 2363 1138 227 97 25 chr15 5036036 5036357 -80659397 - MER2 DNA MER2_type -1 344 1 723 233 84 32 chr15 5036359 5036608 -80659146 - L1MDa LINE L1 -4044 2362 2101 2739 201 51 48 chr15 5036614 5036742 -80659012 - L1MDa LINE L1 -4366 2040 1914 2320 101 3 0 chr15 5036742 5037039 -80658715 - AluSc SINE Alu -11 298 1 2739 201 51 48 chr15 5037039 5037748 -80658006 - L1MDa LINE L1 -4492 1914 1200 328 171 48 4 chr15 5037756 5037838 -80657916 + MLT1A1 LTR MaLR 227 301 -73 189 258 32 65 chr15 5037860 5037953 -80657801 - MIR SINE MIR -77 131 42 212 323 20 40 chr15 5038727 5038826 -80656928 + L2 LINE L2 3019 3115 -157 185 179 0 54 chr15 5038982 5039038 -80656716 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 2770 210 74 7 chr15 5039129 5039734 -80656020 - L1MDa LINE L1 -5195 1214 569 524 147 0 74 chr15 5040091 5040186 -80655568 - THE1B LTR MaLR 0 364 277 902 217 82 25 chr15 5040423 5040522 -80655232 - L1MDa LINE L1 -6143 266 174 2524 87 25 33 chr15 5040522 5040889 -80654865 - THE1B LTR MaLR 0 364 1 902 217 82 25 chr15 5040889 5041033 -80654721 - L1MDa LINE L1 -6235 174 9 570 260 104 89 chr15 5041522 5042025 -80653729 + L2 LINE L2 2758 3291 -22 1740 169 23 10 chr15 5043364 5043666 -80652088 - AluJb SINE Alu -5 307 2 22 35 0 0 chr15 5043779 5043808 -80651946 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 5044277 5044298 -80651456 + AT_rich Low_complexity Low_complexity 1 21 0 517 268 100 52 chr15 5044352 5044811 -80650943 + L1ME LINE L1 3 483 -5587 1025 274 31 26 chr15 5045063 5045515 -80650239 + L1ME LINE L1 547 1000 -5070 2231 171 30 2 chr15 5045573 5045999 -80649755 + L1P LINE L1 2817 3254 -2892 1471 292 36 8 chr15 5096530 5097115 -80598639 - L1M4 LINE L1 -1418 4728 4128 3550 225 130 27 chr15 5097127 5098789 -80596965 - L1MDb LINE L1 -4541 1865 7 633 269 42 23 chr15 5099706 5099922 -80595832 - MER92C LTR ERV1 -27 527 308 2010 115 0 17 chr15 5099931 5100252 -80595502 - AluSg SINE Alu 0 316 1 4899 145 56 18 chr15 5100270 5100835 -80594919 - MER4D LTR ERV1 0 903 292 3425 133 27 15 chr15 5100835 5101382 -80594372 + MER41C LTR ERV1 1 554 0 4899 145 56 18 chr15 5101382 5101686 -80594068 - MER4D LTR ERV1 -611 292 1 305 263 26 53 chr15 5101686 5101782 -80593972 - MER92C LTR ERV1 -232 322 230 190 258 45 61 chr15 5105118 5105184 -80590570 + MIR SINE MIR 18 82 -180 188 243 114 0 chr15 5105857 5105927 -80589827 + MER5A DNA MER1_type 28 105 -84 242 248 142 64 chr15 5106469 5106650 -80589104 + Charlie2 DNA MER1_type 2591 2793 -69 2040 131 0 0 chr15 5106650 5106947 -80588807 + AluSx SINE Alu 1 297 -15 242 248 142 64 chr15 5106947 5106983 -80588771 + Charlie2 DNA MER1_type 2793 2825 -37 323 220 22 7 chr15 5107199 5107296 -80588458 - LTR30 LTR ERV1 -102 677 552 1690 116 141 48 chr15 5107299 5107700 -80588054 - pTR5 LTR ERV1 -436 2002 1 2472 104 52 0 chr15 5107700 5108047 -80587707 - HERV9 LTR ERV1 0 8399 8035 849 198 119 18 chr15 5108075 5108302 -80587452 - LTR32 LTR ERVL -51 420 171 589 179 71 50 chr15 5108611 5108751 -80587003 - LTR32 LTR ERVL -286 185 43 * 590 215 87 0 chr15 5108749 5108944 -80586810 + Charlie5 DNA MER1_type 2378 2589 -23 3985 126 5 44 chr15 5109011 5109289 -80586465 + MER41B LTR ERV1 1 288 -347 4384 100 28 15 chr15 5109289 5109941 -80585813 - PABL_A LTR ERV1 0 660 1 3985 126 5 44 chr15 5109941 5110322 -80585432 + MER41B LTR ERV1 288 634 -1 563 265 45 54 chr15 5110353 5110576 -80585178 - MER58A DNA MER1_type -3 221 1 271 248 8 8 chr15 5110852 5110969 -80584785 + CT-rich Low_complexity Low_complexity 1 117 0 205 155 35 0 chr15 5111002 5111060 -80584694 + CT-rich Low_complexity Low_complexity 1 60 0 934 221 13 32 chr15 5111504 5111865 -80583889 - L1M LINE L1 -743 5403 5076 1040 187 21 0 chr15 5111988 5112187 -80583567 + L1PB4 LINE L1 5743 5949 -207 490 222 88 107 chr15 5112189 5112530 -80583224 - LTR58 LTR ERV1 0 670 350 316 224 90 0 chr15 5112728 5112795 -80582959 - LTR35 LTR ERV1 -543 75 3 1188 141 50 0 chr15 5112795 5112994 -80582760 + L1PB4 LINE L1 5948 6156 0 1974 234 64 84 chr15 5112996 5113056 -80582698 - L1MDa LINE L1 -1241 5299 5239 606 245 99 0 chr15 5113056 5113207 -80582547 + FAM SINE Alu 2 167 -8 1974 234 64 84 chr15 5113207 5114058 -80581696 - L1MDa LINE L1 -1301 5239 4407 2292 235 42 82 chr15 5114063 5114974 -80580780 - L1MDa LINE L1 -2450 4090 3261 185 32 0 65 chr15 5114974 5115005 -80580749 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 2292 235 42 82 chr15 5115005 5115577 -80580177 - L1MDa LINE L1 -3279 3261 2668 4059 188 92 11 chr15 5115590 5116587 -80579167 - L1MDa LINE L1 -4384 2156 1079 1461 232 118 25 chr15 5116586 5117060 -80578694 - L1MDa LINE L1 -6016 524 7 * 2296 115 0 10 chr15 5117548 5117860 -80577894 - AluSq SINE Alu -1 312 4 201 175 0 0 chr15 5118586 5118626 -80577128 + CT-rich Low_complexity Low_complexity 2 41 0 1009 257 113 22 chr15 5118642 5119878 -80575876 + L1ME3A LINE L1 4696 6152 -18 465 255 9 9 chr15 5119901 5120007 -80575747 + MER58A DNA MER1_type 37 142 0 300 262 12 12 chr15 5120089 5120173 -80575581 + (TG)n Simple_repeat Simple_repeat 2 85 0 203 276 10 0 chr15 5120186 5120284 -80575470 + (TATG)n Simple_repeat Simple_repeat 4 102 0 201 175 0 0 chr15 5120378 5120418 -80575336 + (TG)n Simple_repeat Simple_repeat 1 40 0 353 359 6 6 chr15 5120430 5120586 -80575168 + (TG)n Simple_repeat Simple_repeat 2 157 0 5236 211 58 27 chr15 5121248 5122514 -80573240 - L1MC3 LINE L1 -169 7616 6312 280 229 43 0 chr15 5122768 5122838 -80572916 - MIR SINE MIR -70 192 120 467 205 188 0 chr15 5122880 5122992 -80572762 - LTR40b LTR ERVL -18 444 312 900 237 34 17 chr15 5123018 5123254 -80572500 - LTR40b LTR ERVL -222 240 1 2221 110 3 0 chr15 5123544 5123834 -80571920 - AluSx SINE Alu -16 296 6 3739 133 38 0 chr15 5124157 5124736 -80571018 - LTR26 LTR ERV1 0 603 3 2345 94 3 7 chr15 5125787 5126096 -80569658 - AluSp SINE Alu -5 308 1 438 279 75 30 chr15 5126347 5126548 -80569206 - L1ME LINE L1 -481 5640 5431 582 60 0 0 chr15 5126980 5127063 -80568691 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1797 147 3 18 chr15 5127064 5127350 -80568404 - AluSx SINE Alu -30 282 1 280 289 12 35 chr15 5127946 5128119 -80567635 + (GGGTG)n Simple_repeat Simple_repeat 2 170 0 1262 187 14 28 chr15 5128292 5128581 -80567173 + L1MA4 LINE L1 6009 6293 -7 237 221 0 0 chr15 5129039 5129107 -80566647 + (TG)n Simple_repeat Simple_repeat 1 68 0 248 263 0 0 chr15 5130671 5130747 -80565007 - MIR SINE MIR -110 152 77 6587 164 19 11 chr15 5130964 5133180 -80562574 - L1PB2 LINE L1 0 6151 3920 249 309 12 0 chr15 5133985 5134066 -80561688 - L3 LINE CR1 -150 1427 1346 182 266 0 31 chr15 5137621 5137685 -80558069 + L2 LINE L2 3111 3172 -141 189 0 0 0 chr15 5137853 5137874 -80557880 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 3681 217 52 22 chr15 5138015 5139362 -80556392 - L1M4 LINE L1 -2427 3955 2387 1950 95 4 0 chr15 5139362 5139614 -80556140 - AluSq SINE Alu 0 313 61 3681 217 52 22 chr15 5139614 5139974 -80555780 - L1M4 LINE L1 -3995 2387 2039 2135 241 88 60 chr15 5139988 5140172 -80555582 - L1M4 LINE L1 -4966 1314 1137 1421 151 12 8 chr15 5140172 5140424 -80555330 - L1MB3 LINE L1 0 6183 5931 2135 241 88 60 chr15 5140424 5141031 -80554723 - L1M4 LINE L1 -5143 1137 548 362 69 17 0 chr15 5141031 5141089 -80554665 + (TG)n Simple_repeat Simple_repeat 2 60 0 2135 241 88 60 chr15 5141089 5141431 -80554323 - L1M4 LINE L1 -5732 548 104 1519 210 92 16 chr15 5141431 5141864 -80553890 + MLT1C LTR MaLR 2 467 0 2135 241 88 60 chr15 5141864 5141966 -80553788 - L1M4 LINE L1 -6176 104 6 331 306 24 16 chr15 5141977 5142101 -80553653 + L2 LINE L2 3184 3308 -5 308 176 30 5 chr15 5143617 5143698 -80552056 - MLT1H LTR MaLR -385 164 41 7892 19 2 0 chr15 5144180 5145329 -80550425 - L1PA2 LINE L1 0 6155 5004 2042 30 0 0 chr15 5145329 5145565 -80550189 + L1PA2 LINE L1 4778 5013 -1133 210 319 103 36 chr15 5145764 5145932 -80549822 + MIR SINE MIR 8 188 -58 944 199 0 6 chr15 5147924 5148105 -80547649 - L1MB3 LINE L1 -7 6176 5997 284 293 30 10 chr15 5151681 5151780 -80543974 - L1ME4a LINE L1 -57 6064 5964 521 307 164 17 chr15 5151824 5152355 -80543399 - L1ME4a LINE L1 -226 5895 5287 2399 213 59 0 chr15 5152517 5153023 -80542731 - L1MD1 LINE L1 0 6242 5707 1232 237 26 66 chr15 5153030 5153532 -80542222 - L1ME4a LINE L1 -919 5227 4746 250 286 87 29 chr15 5153633 5154150 -80541604 - L1ME4a LINE L1 -2794 3352 2806 367 336 69 30 chr15 5154198 5154531 -80541223 - L1ME4a LINE L1 -3461 2685 2340 307 278 61 51 chr15 5155174 5155469 -80540285 - HAL1b LINE L1 -745 603 306 195 42 0 0 chr15 5156142 5156166 -80539588 + (T)n Simple_repeat Simple_repeat 1 24 0 279 133 13 40 chr15 5157599 5157674 -80538080 + A-rich Low_complexity Low_complexity 3 75 0 1134 138 37 0 chr15 5158166 5158354 -80537400 - L1M3 LINE L1 -359 5812 5618 7342 223 64 47 chr15 5158356 5159981 -80535773 - L1M3 LINE L1 -725 5441 3844 2214 98 41 0 chr15 5159981 5160276 -80535478 - AluSc SINE Alu -1 308 2 7342 223 64 47 chr15 5160276 5160587 -80535167 - L1M3 LINE L1 -2322 3844 3540 1802 179 3 10 chr15 5160587 5160877 -80534877 - AluJb SINE Alu -24 288 1 7342 223 64 47 chr15 5160877 5161565 -80534189 - L1M3 LINE L1 -2626 3540 2777 400 278 129 72 chr15 5161568 5161799 -80533955 + L2 LINE L2 2776 2992 -321 2080 102 0 0 chr15 5161799 5162065 -80533689 - AluSx SINE Alu -14 298 33 400 278 129 72 chr15 5162065 5162349 -80533405 + L2 LINE L2 2992 3313 0 187 301 64 55 chr15 5165966 5166185 -80529569 - L2 LINE L2 -711 2603 2383 23 0 0 0 chr15 5168131 5168154 -80527600 + AT_rich Low_complexity Low_complexity 1 23 0 232 190 35 0 chr15 5169265 5169323 -80526431 + GA-rich Low_complexity Low_complexity 3 62 0 225 154 0 0 chr15 5169324 5169363 -80526391 + A-rich Low_complexity Low_complexity 4 42 0 1041 268 77 18 chr15 5169908 5170367 -80525387 - L1ME1 LINE L1 -22 6144 5663 23 0 0 0 chr15 5170442 5170465 -80525289 + AT_rich Low_complexity Low_complexity 1 23 0 1419 188 0 0 chr15 5170468 5170713 -80525041 + AluJo SINE Alu 1 245 -67 245 230 50 30 chr15 5171104 5171219 -80524535 - MLT1H LTR MaLR 0 590 437 237 258 52 52 chr15 5171392 5171489 -80524265 - MLT1G1 LTR MaLR -498 97 1 292 212 0 15 chr15 5171537 5171603 -80524151 + MLT1K LTR MaLR 524 588 0 2609 241 35 52 chr15 5172042 5172788 -80522966 - MER21B LTR ERV1 -112 751 19 1795 119 60 11 chr15 5173621 5173906 -80521848 + AluSx SINE Alu 1 299 -13 2133 94 0 0 chr15 5175433 5175720 -80520034 - AluSc SINE Alu -8 301 15 312 304 64 41 chr15 5176106 5176326 -80519428 - L1MEd LINE L1 -2884 3245 3021 235 258 88 25 chr15 5176616 5176775 -80518979 - L1M4 LINE L1 -1437 4709 4541 282 294 178 33 chr15 5176804 5176984 -80518770 - ERVL LTR ERVL -3174 2590 2385 227 290 21 43 chr15 5177253 5177346 -80518408 - LTR67 LTR ERVL -389 168 78 303 248 53 60 chr15 5177388 5177521 -80518233 - L1MEd LINE L1 -5031 1088 957 322 268 192 56 chr15 5180296 5180361 -80515393 + MIR SINE MIR 8 63 -199 216 0 0 0 chr15 5180361 5180385 -80515369 + (TG)n Simple_repeat Simple_repeat 1 24 0 322 268 192 56 chr15 5180385 5180517 -80515237 + MIR SINE MIR 63 232 -30 32 43 0 0 chr15 5182088 5182134 -80513620 + AT_rich Low_complexity Low_complexity 1 46 0 23 88 0 0 chr15 5182181 5182215 -80513539 + AT_rich Low_complexity Low_complexity 1 34 0 1411 216 126 10 chr15 5182649 5183707 -80512047 - L1ME1 LINE L1 -29 6137 4853 6853 259 82 41 chr15 5183909 5187346 -80508408 + L1M4c LINE L1 1515 5194 -1188 2746 207 23 16 chr15 5187352 5187966 -80507788 - L1MB5 LINE L1 -213 5961 5344 1047 180 0 0 chr15 5187963 5188157 -80507597 - L1M4 LINE L1 -361 5813 5620 * 1642 269 93 22 chr15 5188155 5189411 -80506343 - L1MCc LINE L1 -4762 2179 830 429 342 66 35 chr15 5189529 5190012 -80505742 - L1MCc LINE L1 -5886 537 40 209 275 208 13 chr15 5190473 5190622 -80505132 + L2 LINE L2 3135 3312 -1 346 305 23 23 chr15 5191356 5191487 -80504267 + L2 LINE L2 3182 3312 -1 263 297 27 63 chr15 5191492 5191603 -80504151 + MIR3 SINE MIR 96 202 -6 327 340 149 18 chr15 5192019 5192348 -80503406 + L3 LINE CR1 1103 1474 -103 382 215 68 61 chr15 5192681 5192844 -80502910 - MER103 DNA DNA -2 164 1 718 127 25 0 chr15 5193382 5193500 -80502254 - L1MB1 LINE L1 0 6168 6048 2848 221 18 15 chr15 5193500 5194305 -80501449 + L1M4c LINE L1 2244 3058 -3324 274 305 78 39 chr15 5194394 5194522 -80501232 + MIR SINE MIR 112 244 -18 239 265 12 12 chr15 5197035 5197118 -80498636 + GA-rich Low_complexity Low_complexity 1 83 0 1381 217 95 0 chr15 5197435 5197781 -80497973 + MLT1B LTR MaLR 1 379 -11 402 39 0 0 chr15 5198290 5198342 -80497412 + (CA)n Simple_repeat Simple_repeat 2 53 0 1668 181 28 39 chr15 5198424 5198811 -80496943 - MLT1B LTR MaLR -7 383 1 668 243 64 40 chr15 5199679 5199881 -80495873 + MIR SINE MIR 56 262 0 2217 92 7 3 chr15 5200537 5200843 -80494911 - AluSc SINE Alu -2 307 1 189 154 0 0 chr15 5201064 5201103 -80494651 + (TAG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr15 5201997 5202018 -80493736 + AT_rich Low_complexity Low_complexity 1 21 0 194 88 0 29 chr15 5202256 5202290 -80493464 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 881 173 0 14 chr15 5202292 5202661 -80493093 + GA-rich Low_complexity Low_complexity 1 363 0 1056 214 97 35 chr15 5203786 5204076 -80491678 + MER92B LTR ERV1 1 308 -328 876 197 25 25 chr15 5204144 5204347 -80491407 + MER92B LTR ERV1 434 636 0 248 118 0 171 chr15 5205364 5205440 -80490314 - LTR39 LTR ERV1 -720 63 1 913 96 0 7 chr15 5205828 5205963 -80489791 - L1PB1 LINE L1 0 6151 6018 1434 176 32 22 chr15 5206769 5207082 -80488672 - LTR23 LTR ERV1 0 437 122 194 294 120 11 chr15 5207676 5207768 -80487986 + MIR SINE MIR 31 132 -130 1547 135 52 11 chr15 5208941 5209208 -80486546 + AluSx SINE Alu 17 294 -18 517 273 87 6 chr15 5209349 5209510 -80486244 - MIR SINE MIR -41 221 48 311 288 102 34 chr15 5209593 5209770 -80485984 + MIR SINE MIR 61 249 -13 189 121 69 138 chr15 5211431 5211489 -80484265 + L2 LINE L2 2314 2367 -947 218 173 58 58 chr15 5212739 5212791 -80482963 + MIR SINE MIR 23 74 -134 2365 70 0 13 chr15 5213328 5213642 -80482112 - AluY SINE Alu -1 310 1 201 342 75 20 chr15 5213841 5214136 -80481618 + L2 LINE L2 865 1263 -2051 196 267 33 17 chr15 5214507 5214567 -80481187 + L2 LINE L2 1377 1437 -1877 184 282 39 0 chr15 5214667 5214745 -80481009 + L2 LINE L2 1610 1690 -1624 246 296 12 0 chr15 5215642 5215723 -80480031 + L2 LINE L2 2813 2894 -419 3045 181 8 2 chr15 5215726 5216262 -80479492 + L1PA16 LINE L1 5617 6155 -11 302 384 23 9 chr15 5216395 5216614 -80479140 + HERV16 LTR ERVL 1258 1479 -3517 691 325 62 19 chr15 5216748 5217167 -80478587 + HERV16 LTR ERVL 1785 2221 -3543 1345 331 41 20 chr15 5217250 5217909 -80477845 + HERV16 LTR ERVL 2930 3602 -2162 295 315 45 0 chr15 5220726 5220815 -80474939 + MIR3 SINE MIR 111 203 -5 644 190 22 0 chr15 5221313 5221450 -80474304 - L1MA10 LINE L1 0 6334 6195 788 242 41 0 chr15 5221460 5221654 -80474100 - L1M4 LINE L1 -538 5636 5435 2300 151 12 24 chr15 5221654 5222065 -80473689 - L1MB3 LINE L1 -1 6182 5777 180 357 108 8 chr15 5222268 5222397 -80473357 + L2 LINE L2 3127 3268 -4 2487 90 0 0 chr15 5223186 5223498 -80472256 + AluSx SINE Alu 1 312 0 1348 285 81 37 chr15 5224158 5224199 -80471555 - L1ME2 LINE L1 -195 5903 5865 2289 47 54 0 chr15 5224199 5224477 -80471277 - AluY SINE Alu -18 293 1 1348 285 81 37 chr15 5224477 5225116 -80470638 - L1ME2 LINE L1 -233 5865 5193 1484 276 161 29 chr15 5225123 5226173 -80469581 - L1ME2 LINE L1 -942 5138 3950 243 225 75 38 chr15 5226617 5226697 -80469057 - L1ME2 LINE L1 -5984 86 4 25 31 0 0 chr15 5226744 5226776 -80468978 + AT_rich Low_complexity Low_complexity 1 32 0 623 235 31 0 chr15 5226804 5226966 -80468788 - L1MA8 LINE L1 0 6291 6125 * 3331 230 24 25 chr15 5226965 5227168 -80468586 - L1M1 LINE L1 -4499 3066 2864 205 0 114 0 chr15 5227168 5227203 -80468551 + T-rich Low_complexity Low_complexity 2 40 0 3331 230 24 25 chr15 5227203 5228121 -80467633 - L1M1 LINE L1 -4701 2864 2019 2309 238 26 42 chr15 5228122 5228736 -80467018 - L1M1 LINE L1 -6419 1070 467 2005 135 28 0 chr15 5228762 5229051 -80466703 - AluSg SINE Alu -13 297 1 34 55 0 0 chr15 5229055 5229110 -80466644 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr15 5229190 5229216 -80466538 + AT_rich Low_complexity Low_complexity 1 26 0 272 314 58 0 chr15 5229216 5229302 -80466452 - L2 LINE L2 -10 3303 3213 301 315 16 8 chr15 5231882 5232009 -80463745 - MLT1L LTR MaLR -5 610 483 1672 242 55 21 chr15 5232128 5232152 -80463602 + MER21B LTR ERV1 1 23 -840 414 0 0 0 chr15 5232152 5232198 -80463556 + (TA)n Simple_repeat Simple_repeat 2 47 0 1672 242 55 21 chr15 5232198 5232595 -80463159 + MER21B LTR ERV1 23 436 -427 1496 201 64 38 chr15 5232598 5233017 -80462737 + MER21B LTR ERV1 376 805 -58 238 200 0 0 chr15 5233159 5233204 -80462550 + MLT1D LTR MaLR 2 46 -459 279 243 27 10 chr15 5233332 5233428 -80462326 + MLT1D LTR MaLR 317 394 -111 228 200 0 0 chr15 5233439 5233479 -80462275 + MLT1D LTR MaLR 587 626 0 1686 227 107 71 chr15 5233482 5234102 -80461652 + MLT1D-int LTR MaLR 3 644 -727 1823 263 56 68 chr15 5234265 5234945 -80460809 + MLT1D-int LTR MaLR 692 1363 -8 578 189 9 0 chr15 5234967 5235073 -80460681 + MLT1D LTR MaLR 23 129 -376 249 310 26 9 chr15 5236032 5236145 -80459609 - MLT1J LTR MaLR -8 503 389 303 180 0 0 chr15 5236152 5236231 -80459523 - L1PA8A LINE L1 0 6131 6068 259 324 43 7 chr15 5236294 5236433 -80459321 - MLT1J LTR MaLR -314 197 54 2131 112 0 3 chr15 5236587 5236916 -80458838 - AluSx SINE Alu 0 328 1 2194 118 30 0 chr15 5237332 5237636 -80458118 - AluSq SINE Alu 0 313 1 1437 177 20 96 chr15 5238362 5238769 -80456985 + MLT1B LTR MaLR 8 383 -7 326 316 73 9 chr15 5239599 5239788 -80455966 - L2 LINE L2 -3 3310 3104 2103 132 6 3 chr15 5239788 5240099 -80455655 + AluSx SINE Alu 1 312 0 326 316 73 9 chr15 5240099 5240127 -80455627 - L2 LINE L2 -209 3104 3079 755 137 17 23 chr15 5240131 5240306 -80455448 + GA-rich Low_complexity Low_complexity 4 177 0 21 0 0 0 chr15 5241155 5241176 -80454578 + AT_rich Low_complexity Low_complexity 1 21 0 806 204 7 0 chr15 5241567 5241709 -80454045 - AluJb SINE Alu -34 278 136 540 277 26 0 chr15 5242099 5242114 -80453640 - L1MA10 LINE L1 0 6334 6320 324 249 175 35 chr15 5242114 5242368 -80453386 - L1ME2 LINE L1 -9 6155 5844 198 192 0 0 chr15 5242368 5242420 -80453334 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5242441 5242475 -80453279 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 31 44 0 0 chr15 5242520 5242565 -80453189 + AT_rich Low_complexity Low_complexity 1 45 0 373 224 96 8 chr15 5242649 5242774 -80452980 - L1ME2 LINE L1 -360 5806 5671 376 182 0 0 chr15 5242776 5242842 -80452912 + MSTC LTR MaLR 3 68 -360 971 235 41 26 chr15 5242980 5243248 -80452506 + MSTC LTR MaLR 157 428 0 390 158 162 77 chr15 5243248 5243407 -80452347 - L1ME2 LINE L1 -491 5675 5508 1016 218 46 46 chr15 5243434 5243737 -80452017 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5243891 5243953 -80451801 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 3990 245 50 41 chr15 5245252 5246721 -80449033 + L1M4 LINE L1 2920 4402 -1744 2540 251 67 47 chr15 5246909 5248041 -80447713 + L1M4 LINE L1 3382 4536 -1610 991 273 50 14 chr15 5248019 5248382 -80447372 + L1MD2 LINE L1 5974 6349 -10 * 366 245 57 0 chr15 5249057 5249163 -80446591 - MLT1J LTR MaLR -342 169 58 299 231 74 65 chr15 5249455 5249492 -80446262 + MER5A DNA MER1_type 80 115 -74 3751 121 24 121 chr15 5249492 5250252 -80445502 - LTR12 LTR ERV1 0 688 3 299 231 74 65 chr15 5250252 5250322 -80445432 + MER5A DNA MER1_type 115 188 -1 300 340 26 26 chr15 5250501 5250657 -80445097 + L2 LINE L2 3116 3271 -1 1320 231 137 70 chr15 5250872 5251457 -80444297 - MLT1E2 LTR MaLR -2 624 1 1302 230 40 162 chr15 5251457 5252227 -80443527 - MLT1E2-int LTR MaLR 0 1371 696 2314 243 26 3 chr15 5252433 5253005 -80442749 - MLT1E2-int LTR MaLR -781 590 6 992 287 94 3 chr15 5253024 5253310 -80442444 - MLT1E2 LTR MaLR 0 626 315 810 193 37 32 chr15 5253290 5253477 -80442277 - MLT1E2 LTR MaLR -438 188 1 * 1628 290 55 70 chr15 5253511 5254448 -80441306 + L1M4 LINE L1 -260 662 -5618 673 94 10 10 chr15 5254448 5254544 -80441210 - MSTA LTR MaLR 0 428 333 450 68 122 40 chr15 5254550 5254624 -80441130 - THE1C LTR MaLR -295 80 1 2215 199 64 42 chr15 5254624 5255801 -80439953 + L1M4 LINE L1 658 2103 -4281 243 0 0 0 chr15 5257032 5257059 -80438695 + (T)n Simple_repeat Simple_repeat 1 27 0 663 280 125 11 chr15 5257212 5257491 -80438263 + L1ME3A LINE L1 5661 5971 -199 659 191 64 0 chr15 5258025 5258166 -80437588 - L1MB3 LINE L1 -7 6176 6027 21 0 0 0 chr15 5258602 5258623 -80437131 + AT_rich Low_complexity Low_complexity 1 21 0 2028 112 97 9 chr15 5259441 5259780 -80435974 - THE1C LTR MaLR -3 372 4 215 0 0 62 chr15 5259803 5259835 -80435919 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 181 264 97 0 chr15 5259889 5259961 -80435793 - MIR SINE MIR -77 185 107 188 268 0 0 chr15 5260776 5260817 -80434937 + MIR SINE MIR 216 256 -6 450 265 74 37 chr15 5261254 5261469 -80434285 + L1ME LINE L1 5532 5754 -367 3837 193 60 9 chr15 5261612 5262484 -80433270 + L1MA4A LINE L1 1 916 -5933 5957 150 28 25 chr15 5262484 5263827 -80431927 + L1MA4A LINE L1 5649 7005 0 207 279 124 90 chr15 5263996 5264197 -80431557 - L3 LINE CR1 -58 1519 1312 2023 174 61 30 chr15 5264871 5265278 -80430476 - MSTB LTR MaLR 0 426 7 464 304 34 14 chr15 5266570 5266718 -80429036 - L2 LINE L2 -1 3312 3162 217 145 32 0 chr15 5266764 5266826 -80428928 + (TA)n Simple_repeat Simple_repeat 2 65 0 424 213 40 29 chr15 5267726 5267900 -80427854 + (TG)n Simple_repeat Simple_repeat 1 176 0 308 152 70 13 chr15 5267941 5268099 -80427655 + (TG)n Simple_repeat Simple_repeat 1 167 0 3490 106 32 4 chr15 5268975 5269474 -80426280 - LTR10D LTR ERV1 0 513 1 1576 130 13 4 chr15 5269568 5269806 -80425948 - MSTA LTR MaLR 0 428 189 1170 96 0 24 chr15 5269808 5269974 -80425780 - AluSp SINE Alu -14 299 138 1293 132 10 5 chr15 5269975 5270172 -80425582 - MSTA LTR MaLR -230 198 1 * 2171 140 79 25 chr15 5270172 5270561 -80425193 - MSTC LTR MaLR -18 410 1 1362 214 60 3 chr15 5270586 5270885 -80424869 - MER58B DNA MER1_type 0 341 26 355 296 71 33 chr15 5271843 5272083 -80423671 + MER34B LTR ERV1 317 565 0 303 293 72 83 chr15 5274879 5275241 -80420513 - MLT1I LTR MaLR -2 407 50 450 284 14 27 chr15 5275439 5275587 -80420167 + MIR SINE MIR 63 208 -54 247 374 71 13 chr15 5276120 5276275 -80419479 - L2 LINE L2 0 3272 3109 549 200 0 10 chr15 5276294 5276394 -80419360 + MLT1A1 LTR MaLR 267 365 0 1300 194 145 17 chr15 5277374 5277959 -80417795 - LTR48 LTR ERV1 0 644 1 3173 128 41 41 chr15 5278889 5279497 -80416257 - MER4B LTR ERV1 0 779 1 2701 235 31 10 chr15 5280390 5280994 -80414760 + MER82 DNA MER2_type 26 642 -11 1072 213 39 67 chr15 5281048 5281264 -80414490 - MLT1A1 LTR MaLR -18 347 143 780 162 0 28 chr15 5281264 5281406 -80414348 + L1PA10 LINE L1 6025 6162 -6 1072 213 39 67 chr15 5281406 5281546 -80414208 - MLT1A1 LTR MaLR -222 143 1 302 212 40 22 chr15 5281893 5281986 -80413768 + MIR SINE MIR 63 158 -58 788 243 26 13 chr15 5281997 5282223 -80413531 - MER92B LTR ERV1 -15 621 393 955 196 174 42 chr15 5282261 5282526 -80413228 - MER92B LTR ERV1 -336 300 1 212 300 80 10 chr15 5282527 5282627 -80413127 + MIR SINE MIR 156 262 0 1121 169 0 5 chr15 5283077 5283266 -80412488 + AluJo SINE Alu 86 273 -39 327 234 0 0 chr15 5283306 5283370 -80412384 + L1MC4 LINE L1 6640 6703 -1339 524 234 85 21 chr15 5284531 5284672 -80411082 + MIR SINE MIR 107 256 -6 1009 275 66 22 chr15 5285063 5285470 -80410284 + LTR37A LTR ERV1 1 425 -1 1313 203 14 10 chr15 5287933 5288228 -80407526 - L1MA5 LINE L1 0 6300 6005 1600 180 35 38 chr15 5289358 5289724 -80406030 - MLT1A1 LTR MaLR 0 365 1 479 313 82 5 chr15 5290007 5290215 -80405539 - MER58A DNA MER1_type 0 224 1 1743 174 0 7 chr15 5290240 5290538 -80405216 + AluJb SINE Alu 1 296 -16 525 267 0 0 chr15 5291332 5291592 -80404162 + (TG)n Simple_repeat Simple_repeat 1 260 0 1512 223 56 11 chr15 5291762 5292201 -80403553 + MER89 LTR ERV1 1 559 0 375 287 65 57 chr15 5292611 5292841 -80402913 + MIR SINE MIR 31 262 0 3646 214 66 7 chr15 5293493 5294324 -80401430 - L1MC3 LINE L1 -511 7274 6395 312 202 34 56 chr15 5295921 5296010 -80399744 - L1MCa LINE L1 -4336 2090 2004 480 275 8 23 chr15 5296025 5296156 -80399598 - L2 LINE L2 0 3272 3144 27 29 0 0 chr15 5297313 5297347 -80398407 + AT_rich Low_complexity Low_complexity 1 34 0 213 261 0 0 chr15 5297583 5297629 -80398125 + (TA)n Simple_repeat Simple_repeat 1 46 0 404 163 29 0 chr15 5297629 5297709 -80398045 + MLT2D LTR ERVL 301 480 -40 198 236 0 0 chr15 5297726 5297781 -80397973 + (TA)n Simple_repeat Simple_repeat 2 56 0 1944 162 29 21 chr15 5297801 5298141 -80397613 - MLT2D LTR ERVL -41 373 31 1009 66 22 0 chr15 5299625 5299762 -80395992 - L1MA8 LINE L1 -25 6266 6127 379 127 89 0 chr15 5299763 5299842 -80395912 - L1 LINE L1 -861 5285 5200 1869 152 108 8 chr15 5299845 5300214 -80395540 - L1MA8 LINE L1 -165 6126 5721 3404 97 19 13 chr15 5300214 5300705 -80395049 + LTR15 LTR ERV1 1 595 0 3077 133 19 35 chr15 5300705 5300929 -80394825 - L1MA8 LINE L1 -567 5724 5498 3772 131 38 0 chr15 5300929 5301488 -80394266 + LTR19B LTR ERV1 1 580 0 3077 133 19 35 chr15 5301488 5302215 -80393539 - L1MA8 LINE L1 -793 5498 4790 333 0 0 0 chr15 5302215 5302252 -80393502 + (TG)n Simple_repeat Simple_repeat 2 38 0 894 192 12 6 chr15 5302254 5302426 -80393328 - AluJb SINE Alu -23 289 117 1735 142 14 0 chr15 5302426 5302714 -80393040 - L1MA8 LINE L1 -1367 4779 4488 306 0 0 0 chr15 5303361 5303395 -80392359 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 211 0 0 chr15 5304641 5304679 -80391075 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 305 301 94 8 chr15 5304679 5304797 -80390957 + L1MC4 LINE L1 6589 6703 -1339 * 308 255 128 11 chr15 5304752 5304846 -80390908 - L1MC4 LINE L1 -1337 6705 6601 322 292 45 11 chr15 5305085 5305174 -80390580 + L1MC4 LINE L1 6611 6702 -1340 * 325 267 35 12 chr15 5305149 5305235 -80390519 - L1MC4 LINE L1 -1341 6701 6614 192 152 0 0 chr15 5306028 5306061 -80389693 + T-rich Low_complexity Low_complexity 3 35 0 303 268 117 57 chr15 5306934 5307199 -80388555 - L1M4 LINE L1 -1073 5073 4793 4134 152 197 20 chr15 5307203 5308493 -80387261 + pTR5 LTR ERV1 741 2437 -1 3725 179 37 13 chr15 5308576 5309334 -80386420 - L1MA7 LINE L1 0 6291 5516 5722 168 19 4 chr15 5309335 5310392 -80385362 + L1 LINE L1 3646 4718 -1428 517 297 28 31 chr15 5310393 5310679 -80385075 - L1M4 LINE L1 -1440 4706 4422 596 285 16 36 chr15 5311144 5311337 -80384417 - MIR SINE MIR -30 232 44 1288 159 40 36 chr15 5312184 5312236 -80383518 - L1MA5 LINE L1 -2 6298 6248 1949 107 3 58 chr15 5312236 5312545 -80383209 - AluSx SINE Alu -20 292 1 1288 159 40 36 chr15 5312545 5312768 -80382986 - L1MA5 LINE L1 -52 6248 6022 22 80 0 0 chr15 5312963 5313013 -80382741 + AT_rich Low_complexity Low_complexity 1 50 0 3945 144 29 47 chr15 5313021 5313505 -80382249 - L1MB3 LINE L1 -2 6181 5715 3625 135 23 30 chr15 5313505 5314112 -80381642 + LTR26 LTR ERV1 1 603 0 3945 144 29 47 chr15 5314112 5314395 -80381359 - L1MB3 LINE L1 -468 5715 5428 1155 201 17 8 chr15 5314681 5314920 -80380834 + MER4E LTR ERV1 539 779 0 1112 211 164 40 chr15 5315862 5316450 -80379304 + LTR48 LTR ERV1 1 644 0 366 307 15 0 chr15 5317659 5317796 -80377958 - L1MA10 LINE L1 -20 6314 6176 241 215 177 0 chr15 5317831 5317910 -80377844 - L1ME2 LINE L1 -228 5936 5844 198 192 0 0 chr15 5317910 5317962 -80377792 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5317983 5318017 -80377737 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 200 89 67 0 chr15 5318062 5318107 -80377647 + (TA)n Simple_repeat Simple_repeat 2 49 0 341 219 78 23 chr15 5318198 5318326 -80377428 - L1ME2 LINE L1 -364 5802 5668 245 123 15 77 chr15 5318329 5318394 -80377360 + MSTC LTR MaLR 6 66 -362 837 238 42 26 chr15 5318539 5318804 -80376950 + MSTC LTR MaLR 157 425 -3 335 196 145 58 chr15 5318808 5318946 -80376808 - L1ME2 LINE L1 -491 5675 5526 885 224 40 40 chr15 5318996 5319299 -80376455 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5319454 5319516 -80376238 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 662 229 4 32 chr15 5320827 5321080 -80374674 + L1M4 LINE L1 2925 3170 -2976 1928 138 31 7 chr15 5322862 5323151 -80372603 + AluSx SINE Alu 1 296 -16 2481 88 0 0 chr15 5323790 5324098 -80371656 - AluSc SINE Alu -1 308 1 25 31 0 0 chr15 5327122 5327154 -80368600 + AT_rich Low_complexity Low_complexity 1 32 0 22574 171 29 16 chr15 5327636 5332788 -80362966 - L1P3 LINE L1 -743 5718 430 1749 239 35 26 chr15 5332814 5333368 -80362386 - L1P3 LINE L1 -5330 545 2 348 225 117 0 chr15 5333624 5333735 -80362019 - L1MC4 LINE L1 0 8042 7919 2266 107 7 0 chr15 5333803 5334103 -80361651 - AluSx SINE Alu -10 302 1 236 294 0 0 chr15 5334203 5334295 -80361459 - Charlie2a DNA MER1_type -1370 1492 1401 24 32 0 0 chr15 5335221 5335252 -80360502 + AT_rich Low_complexity Low_complexity 1 31 0 231 236 14 28 chr15 5335347 5335419 -80360335 + CT-rich Low_complexity Low_complexity 4 74 0 2097 138 0 0 chr15 5336140 5336436 -80359318 - AluSq SINE Alu -17 296 1 22 35 0 0 chr15 5336632 5336661 -80359093 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr15 5336680 5336713 -80359041 + AT_rich Low_complexity Low_complexity 1 33 0 697 286 53 11 chr15 5337081 5337363 -80358391 + L1P3 LINE L1 5561 5853 -319 1217 146 59 14 chr15 5338003 5338223 -80357531 + MER30 DNA MER1_type 1 230 0 1978 146 7 7 chr15 5338744 5339046 -80356708 + AluSx SINE Alu 1 302 -10 713 251 79 20 chr15 5339211 5339554 -80356200 + Charlie2a DNA MER1_type 911 1273 -1589 722 319 83 27 chr15 5339686 5340093 -80355661 - L2 LINE L2 -20 3293 2864 294 333 72 31 chr15 5340129 5340447 -80355307 - L2 LINE L2 -586 2728 2398 182 264 57 0 chr15 5341080 5341133 -80354621 - L2 LINE L2 -2 3311 3256 2314 74 0 0 chr15 5341266 5341580 -80354174 - AluY SINE Alu 0 314 1 983 106 0 0 chr15 5341585 5341717 -80354037 - AluY SINE Alu -179 132 1 232 192 48 67 chr15 5341747 5341851 -80353903 + MLT1I LTR MaLR 249 350 -59 1035 252 91 23 chr15 5341935 5341993 -80353761 - MLT2F LTR ERVL -9 654 601 300 27 0 0 chr15 5341993 5342030 -80353724 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 414 0 0 0 chr15 5342029 5342075 -80353679 + (TG)n Simple_repeat Simple_repeat 1 46 0 1035 252 91 23 chr15 5342030 5342151 -80353603 - MLT2F LTR ERVL -62 601 490 189 0 0 0 chr15 5342151 5342172 -80353582 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 1035 252 91 23 chr15 5342172 5342476 -80353278 - MLT2F LTR ERVL -173 490 185 1732 255 47 72 chr15 5342571 5344283 -80351471 - L1MEc LINE L1 -3164 3051 1437 368 128 21 32 chr15 5344284 5344378 -80351376 + CT-rich Low_complexity Low_complexity 3 95 0 351 265 61 39 chr15 5344453 5344683 -80351071 - L1MEc LINE L1 -5037 1181 947 345 291 52 70 chr15 5344690 5344920 -80350834 - L1MEc LINE L1 -5510 886 661 349 347 52 38 chr15 5345596 5346074 -80349680 - L1M4 LINE L1 -3174 2972 2488 343 340 44 6 chr15 5346466 5346625 -80349129 - MER20B DNA MER1_type -612 171 7 343 221 54 69 chr15 5346756 5346960 -80348794 - HAL1b LINE L1 -468 880 680 421 288 144 55 chr15 5347266 5347729 -80348025 - HAL1b LINE L1 -824 524 65 325 246 155 16 chr15 5347734 5347921 -80347833 - MER58C DNA MER1_type -2 213 1 1260 152 13 0 chr15 5350686 5350917 -80344837 - L1MA4A LINE L1 -5 6298 6065 249 337 32 11 chr15 5351460 5351555 -80344199 + L2 LINE L2 3197 3293 -20 22 35 0 0 chr15 5352783 5352812 -80342942 + AT_rich Low_complexity Low_complexity 1 29 0 8300 229 56 27 chr15 5353076 5353424 -80342330 - L1MC3 LINE L1 -7 8058 7722 2425 62 3 0 chr15 5353424 5353714 -80342040 - AluY SINE Alu -16 295 5 8300 229 56 27 chr15 5353714 5355715 -80340039 - L1MC3 LINE L1 -343 7722 5565 2007 131 17 14 chr15 5355715 5356012 -80339742 - AluSx SINE Alu -14 298 1 8300 229 56 27 chr15 5356012 5356940 -80338814 - L1MC3 LINE L1 -2500 5565 4666 3714 254 76 37 chr15 5356965 5358003 -80337751 - L1MC3 LINE L1 -2084 4342 3346 2190 124 0 0 chr15 5358003 5358293 -80337461 + AluSp SINE Alu 1 290 -23 810 124 84 22 chr15 5358293 5358471 -80337283 - L1MA5A LINE L1 -9 6288 6100 3714 254 76 37 chr15 5358471 5359361 -80336393 - L1MC3 LINE L1 -3079 3347 2335 34 0 0 0 chr15 5359405 5359439 -80336315 + AT_rich Low_complexity Low_complexity 1 34 0 478 305 97 55 chr15 5359457 5359696 -80336058 - L1 LINE L1 -3177 3249 3021 934 245 84 25 chr15 5359696 5360018 -80335736 + MER58B DNA MER1_type 1 341 0 478 305 97 55 chr15 5360018 5360336 -80335418 - L1 LINE L1 -3405 3021 2647 288 53 0 0 chr15 5360336 5360374 -80335380 + (TG)n Simple_repeat Simple_repeat 1 38 0 478 305 97 55 chr15 5360374 5360487 -80335267 - L1 LINE L1 -3779 2647 2540 228 238 0 0 chr15 5360487 5360550 -80335204 - L1MC4 LINE L1 0 8042 7980 23 33 0 0 chr15 5360805 5360835 -80334919 + AT_rich Low_complexity Low_complexity 1 30 0 2576 57 0 13 chr15 5361509 5361824 -80333930 - AluY SINE Alu 0 311 1 219 329 29 0 chr15 5362082 5362152 -80333602 + MIR3 SINE MIR 85 156 -52 515 261 30 0 chr15 5362613 5362747 -80333007 + MER21B LTR ERV1 304 441 -422 2316 147 9 104 chr15 5362813 5363343 -80332411 + LTR12 LTR ERV1 1 480 -234 225 57 0 29 chr15 5363808 5363843 -80331911 + (TTTTA)n Simple_repeat Simple_repeat 5 160 0 787 234 0 25 chr15 5363843 5364002 -80331752 - FRAM SINE Alu -25 151 1 1520 129 47 0 chr15 5364319 5364551 -80331203 - L1MA5A LINE L1 -11 6286 6044 30 0 0 0 chr15 5364558 5364588 -80331166 + AT_rich Low_complexity Low_complexity 1 30 0 2400 77 0 19 chr15 5364715 5365039 -80330715 + AluYb8 SINE Alu 1 318 0 3699 80 4 0 chr15 5365627 5366077 -80329677 + MLT2A2 LTR ERVL 1 452 -1 776 257 48 0 chr15 5366129 5366335 -80329419 - MER20 DNA MER1_type -1 218 3 1661 234 131 30 chr15 5367160 5367377 -80328377 + L1MDa LINE L1 21 215 -6325 288 0 0 0 chr15 5367377 5367409 -80328345 + (CA)n Simple_repeat Simple_repeat 2 33 0 1661 234 131 30 chr15 5367409 5367755 -80327999 + L1MDa LINE L1 215 641 -5899 * 1787 216 67 17 chr15 5367753 5368229 -80327525 - L1MDa LINE L1 -5000 1540 1041 2773 160 36 5 chr15 5368578 5369021 -80326733 - MSTB2 LTR MaLR 0 457 1 378 0 0 0 chr15 5369109 5369151 -80326603 + (CA)n Simple_repeat Simple_repeat 1 42 0 316 273 47 35 chr15 5369777 5369949 -80325805 - L1M4 LINE L1 -1437 4709 4536 22 0 0 0 chr15 5371548 5371570 -80324184 + AT_rich Low_complexity Low_complexity 1 22 0 637 233 8 0 chr15 5371570 5371699 -80324055 - MLT1C LTR MaLR -46 421 292 2543 174 44 25 chr15 5371718 5372241 -80323513 - L1MA6 LINE L1 -1 6299 5767 2294 194 29 12 chr15 5373453 5373943 -80321811 + LTR53 LTR ERVL 20 517 -2 1875 199 14 6 chr15 5374230 5374586 -80321168 + MLT1A1 LTR MaLR 7 365 0 394 252 25 23 chr15 5375215 5375392 -80320362 + HERVL74 LTR ERVL 982 1230 -2407 762 191 0 31 chr15 5375392 5375554 -80320200 - L1MC/D LINE L1 -630 5612 5456 1912 255 75 54 chr15 5377260 5377340 -80318414 + MER21B LTR ERV1 19 96 -767 2375 88 3 10 chr15 5377340 5377648 -80318106 - AluSp SINE Alu -7 306 1 1912 255 75 54 chr15 5377648 5378305 -80317449 + MER21B LTR ERV1 96 771 -92 412 284 153 6 chr15 5379926 5380102 -80315652 + MLT1J2 LTR MaLR 3 204 -246 882 291 96 34 chr15 5380146 5380593 -80315161 + LTR33 LTR ERVL 47 521 0 346 203 11 22 chr15 5381871 5382053 -80313701 + (TG)n Simple_repeat Simple_repeat 1 180 0 409 207 6 11 chr15 5382101 5382280 -80313474 + (TG)n Simple_repeat Simple_repeat 2 179 0 404 325 24 8 chr15 5383689 5383812 -80311942 - L2 LINE L2 -11 3261 3137 661 309 133 46 chr15 5384054 5384550 -80311204 + L2 LINE L2 159 697 -2617 1238 276 165 12 chr15 5384583 5385221 -80310533 + L1M4 LINE L1 2296 3030 -3116 1911 275 72 31 chr15 5385237 5385981 -80309773 + L1M4 LINE L1 3158 3870 -2276 2173 112 0 17 chr15 5385981 5386276 -80309478 + AluSx SINE Alu 1 290 -22 1911 275 72 31 chr15 5386276 5386558 -80309196 + L1M4 LINE L1 3870 4229 -1917 1914 157 47 18 chr15 5386558 5386940 -80308814 - L1MB4 LINE L1 -7 6173 5781 4405 200 50 22 chr15 5387125 5388570 -80307184 - L1MB4 LINE L1 -419 5761 4277 220 333 12 0 chr15 5388583 5388664 -80307090 + MIR3 SINE MIR 126 207 -1 234 0 0 0 chr15 5389748 5389774 -80305980 + (TG)n Simple_repeat Simple_repeat 2 27 0 2490 171 107 13 chr15 5390907 5391333 -80304421 + MLT2B2 LTR ERVL 1 476 -39 917 173 11 148 chr15 5391333 5391610 -80304144 - MER8 DNA MER2_type 0 239 1 2490 171 107 13 chr15 5391610 5391650 -80304104 + MLT2B2 LTR ERVL 476 511 -4 5720 148 18 10 chr15 5393195 5394211 -80301543 - L1 LINE L1 -1293 4853 3830 1811 131 6 51 chr15 5394473 5394814 -80300940 + AluSq SINE Alu 1 313 0 1589 189 150 14 chr15 5396278 5396712 -80299042 - LTR54B LTR ERV1 -1 497 5 197 272 39 48 chr15 5397281 5397384 -80298370 - L2 LINE L2 -217 3096 2995 188 382 22 0 chr15 5397782 5397871 -80297883 + MIR SINE MIR 93 183 -79 2540 228 48 159 chr15 5398754 5399832 -80295922 + L1ME2 LINE L1 2333 3529 -2617 326 175 0 0 chr15 5399832 5399895 -80295859 + Alu SINE Alu 240 302 0 2540 228 48 159 chr15 5399895 5400247 -80295507 + L1ME2 LINE L1 3529 3505 -2641 1619 201 7 0 chr15 5400247 5400544 -80295210 + AluJb SINE Alu 1 302 -10 189 0 0 0 chr15 5400544 5400565 -80295189 + (CA)n Simple_repeat Simple_repeat 2 22 0 2540 228 48 159 chr15 5400575 5401286 -80294468 + L1ME2 LINE L1 3504 4292 -1854 1118 119 0 0 chr15 5401324 5401483 -80294271 + AluSg/x SINE Alu 154 312 0 2443 241 107 20 chr15 5401502 5402855 -80292899 + L1ME2 LINE L1 4407 6126 -38 261 289 59 40 chr15 5402753 5402905 -80292849 + L1MA10 LINE L1 6180 6334 0 * 1443 260 37 12 chr15 5403700 5404188 -80291566 - L1M4 LINE L1 -973 5173 4674 2337 68 65 0 chr15 5404191 5404484 -80291270 + L1PB1 LINE L1 5834 6145 -6 447 322 0 0 chr15 5404507 5404653 -80291101 - L1MEc LINE L1 -3629 2586 2441 2032 142 3 0 chr15 5404688 5404991 -80290763 + AluSx SINE Alu 1 304 -8 228 231 77 33 chr15 5404991 5405073 -80290681 + LTR38 LTR ERV1 468 556 0 659 270 44 0 chr15 5405074 5405278 -80290476 - L1MEc LINE L1 -3772 2443 2231 860 247 49 63 chr15 5405289 5405539 -80290215 - L1MEc LINE L1 -6034 362 110 207 0 0 0 chr15 5405539 5405562 -80290192 + (TC)n Simple_repeat Simple_repeat 2 24 0 2156 96 21 0 chr15 5405562 5405844 -80289910 - AluSp SINE Alu -22 291 4 860 247 49 63 chr15 5405844 5405940 -80289814 - L1MEc LINE L1 -6284 112 20 611 220 113 0 chr15 5406432 5406600 -80289154 + MER20 DNA MER1_type 33 219 0 280 257 88 9 chr15 5409555 5409668 -80286086 + L1M4 LINE L1 3659 3780 -2366 21 36 0 0 chr15 5410495 5410523 -80285231 + AT_rich Low_complexity Low_complexity 1 28 0 417 285 89 49 chr15 5410576 5411102 -80284652 + L1ME1 LINE L1 1336 1882 -4839 * 2878 233 49 19 chr15 5411101 5411388 -80284366 + L1ME1 LINE L1 5298 5575 -985 1455 193 68 17 chr15 5411388 5411683 -80284071 + AluJo SINE Alu 1 310 -2 2878 233 49 19 chr15 5411683 5412427 -80283327 + L1ME1 LINE L1 5575 6362 -198 2358 271 63 14 chr15 5412426 5413425 -80282329 + L1MEc LINE L1 1757 2848 -3873 * 1699 256 64 26 chr15 5413437 5414079 -80281675 + L1MEc LINE L1 4035 4700 -1840 440 323 32 14 chr15 5414153 5414373 -80281381 + L1MEc LINE L1 3866 4089 -2451 924 276 104 3 chr15 5414490 5414874 -80280880 + L1MEc LINE L1 4668 5090 -1450 1788 181 0 0 chr15 5415041 5415379 -80280375 + AluJb SINE Alu 1 338 0 295 322 40 40 chr15 5415470 5415672 -80280082 + MLT1J LTR MaLR 308 509 -2 345 288 58 14 chr15 5415798 5415937 -80279817 + MIR SINE MIR 77 221 -41 2996 177 16 19 chr15 5416065 5416629 -80279125 + L1PA16 LINE L1 5586 6147 -19 220 320 13 0 chr15 5418536 5418611 -80277143 - L2 LINE L2 -2 3270 3195 2232 177 77 7 chr15 5418850 5419291 -80276463 - L1MB2 LINE L1 -7 6164 5693 2852 126 24 9 chr15 5419689 5420110 -80275644 - MSTA LTR MaLR 0 428 2 1176 222 61 80 chr15 5420200 5420793 -80274961 - MER67B LTR ERV1 -164 403 1 262 268 0 0 chr15 5420867 5420923 -80274831 + (TG)n Simple_repeat Simple_repeat 2 57 0 1651 187 0 17 chr15 5421521 5421821 -80273933 - AluJo SINE Alu -15 297 3 205 200 147 40 chr15 5423317 5423392 -80272362 - MER5A DNA MER1_type -89 100 18 278 226 189 79 chr15 5423496 5423686 -80272068 + MLT1J2 LTR MaLR 22 232 -218 281 182 159 23 chr15 5423749 5423837 -80271917 + MLT1J2 LTR MaLR 351 450 0 208 279 0 0 chr15 5424052 5424095 -80271659 + MER5A DNA MER1_type 63 105 -84 2210 101 0 19 chr15 5424361 5424668 -80271086 - AluSg SINE Alu -1 309 9 505 184 112 10 chr15 5424941 5425039 -80270715 + FLAM_C SINE Alu 2 109 -34 275 168 8 107 chr15 5425406 5425537 -80270217 + FRAM SINE Alu 23 140 -26 1920 61 32 4 chr15 5425540 5425787 -80269967 - AluY SINE Alu -14 297 44 872 281 35 24 chr15 5425811 5426099 -80269655 + MER93a LTR ERV1 112 402 0 2416 47 4 0 chr15 5427233 5427512 -80268242 - L1PA5 LINE L1 0 6154 5875 2618 61 0 0 chr15 5428437 5428748 -80267006 + AluY SINE Alu 1 311 0 304 374 107 0 chr15 5428893 5429080 -80266674 + MIR SINE MIR 32 238 -24 2448 78 0 0 chr15 5429458 5429767 -80265987 + AluSg1 SINE Alu 1 309 0 209 105 0 26 chr15 5431300 5431338 -80264416 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 2318 78 0 14 chr15 5434192 5434540 -80261214 + AluSq SINE Alu 1 313 0 195 42 0 0 chr15 5435185 5435209 -80260545 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr15 5438136 5438172 -80257582 + AT_rich Low_complexity Low_complexity 1 36 0 2156 93 0 84 chr15 5438172 5438505 -80257249 + AluSx SINE Alu 1 305 -7 201 74 0 0 chr15 5439249 5439276 -80256478 + (TG)n Simple_repeat Simple_repeat 2 28 0 739 75 0 98 chr15 5439905 5440038 -80255716 - LTR9B LTR ERV1 -84 560 441 283 224 0 71 chr15 5440071 5440156 -80255598 - L1P5 LINE L1 -708 5443 5365 216 233 33 17 chr15 5442108 5442168 -80253586 - MIR SINE MIR -120 142 82 22 0 0 0 chr15 5442429 5442451 -80253303 + AT_rich Low_complexity Low_complexity 1 22 0 279 220 258 68 chr15 5443112 5443244 -80252510 + MIR SINE MIR 88 244 -18 35 24 0 0 chr15 5443470 5443512 -80252242 + AT_rich Low_complexity Low_complexity 1 42 0 225 343 55 27 chr15 5445434 5445580 -80250174 + L2 LINE L2 3123 3272 0 1073 99 53 0 chr15 5446370 5446522 -80249232 - L1PA10 LINE L1 0 6168 6009 668 38 13 6 chr15 5446524 5446613 -80249141 + L1PA8A LINE L1 5796 5874 -257 236 271 86 14 chr15 5446919 5446989 -80248765 - L1M2a LINE L1 -6747 421 347 764 207 79 35 chr15 5447127 5447330 -80248424 - L1MD2 LINE L1 -459 5969 5758 5305 196 95 33 chr15 5447349 5448878 -80246876 - L1MDa LINE L1 -3892 2648 1025 27 49 0 0 chr15 5448932 5448973 -80246781 + AT_rich Low_complexity Low_complexity 1 41 0 355 283 101 0 chr15 5449162 5449300 -80246454 - L1MD2 LINE L1 -1050 5165 5014 425 250 74 28 chr15 5449457 5449633 -80246121 - L1MD2 LINE L1 -3584 2631 2448 1147 286 89 42 chr15 5449864 5450864 -80244890 - L1MD2 LINE L1 -4544 1852 806 25 0 0 0 chr15 5452805 5452830 -80242924 + AT_rich Low_complexity Low_complexity 1 25 0 199 280 192 0 chr15 5453214 5453339 -80242415 + L2 LINE L2 2334 2482 -832 229 303 86 63 chr15 5453580 5453801 -80241953 + L2 LINE L2 2849 3074 -198 21 0 0 0 chr15 5453900 5453921 -80241833 + AT_rich Low_complexity Low_complexity 1 21 0 2068 115 3 60 chr15 5453953 5454267 -80241487 - AluSp SINE Alu -17 296 1 2109 104 3 32 chr15 5456750 5457058 -80238696 + AluSq SINE Alu 1 299 -14 257 331 40 24 chr15 5457068 5457192 -80238562 - L1M4 LINE L1 -970 5176 5051 1034 230 72 23 chr15 5457409 5457937 -80237817 + MLT1E LTR MaLR 1 593 0 258 231 68 26 chr15 5457965 5458082 -80237672 - L1M4 LINE L1 -1434 4712 4591 404 332 135 9 chr15 5458337 5458566 -80237188 - HAL1b LINE L1 -994 354 97 2431 66 0 10 chr15 5458673 5458977 -80236777 - AluY SINE Alu -10 301 1 906 300 142 51 chr15 5459407 5460546 -80235208 + L2 LINE L2 2071 3307 -6 917 242 106 124 chr15 5461840 5462683 -80233071 + L1MCb LINE L1 570 1400 -4851 1880 73 4 0 chr15 5662685 5662930 -80032824 - AluSc SINE Alu -63 246 1 32 26 0 0 chr15 5662940 5662979 -80032775 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 5663139 5663160 -80032594 + AT_rich Low_complexity Low_complexity 1 21 0 669 214 30 40 chr15 5663161 5663362 -80032392 + L1MC5 LINE L1 6977 7175 -786 402 299 47 16 chr15 5663372 5663499 -80032255 + MER5B DNA MER1_type 48 178 0 270 304 54 20 chr15 5663590 5663738 -80032016 + L2 LINE L2 2942 3094 -178 530 271 47 10 chr15 5663829 5664021 -80031733 - L1ME1 LINE L1 -114 5986 5788 2268 86 7 0 chr15 5664161 5664462 -80031292 + AluSp SINE Alu 1 303 -10 1419 258 106 23 chr15 5664689 5665237 -80030517 - L1ME1 LINE L1 -298 5806 5165 2241 74 3 3 chr15 5665237 5665535 -80030219 - AluY SINE Alu -13 298 1 1419 258 106 23 chr15 5665535 5665722 -80030032 - L1ME1 LINE L1 -939 5165 4995 882 262 54 81 chr15 5665749 5665820 -80029934 - L1ME1 LINE L1 -3107 2973 2902 2653 146 50 7 chr15 5665820 5666280 -80029474 - L1MB2 LINE L1 -2 6169 5690 882 262 54 81 chr15 5666280 5666953 -80028801 - L1ME1 LINE L1 -3178 2902 2249 3131 185 189 6 chr15 5666955 5667678 -80028076 - L1MC3 LINE L1 -12 7773 6918 291 310 49 28 chr15 5667964 5668106 -80027648 - L1ME1 LINE L1 -5924 146 2 2280 74 0 10 chr15 5668247 5668556 -80027198 - AluY SINE Alu -5 306 1 714 330 113 45 chr15 5669006 5669425 -80026329 - L3 LINE CR1 -861 716 258 655 201 141 5 chr15 5669425 5669609 -80026145 - MER3 DNA MER1_type 0 209 1 714 330 113 45 chr15 5669609 5669674 -80026080 - L3 LINE CR1 -1319 258 199 1036 126 12 18 chr15 5669679 5669846 -80025908 - FRAM SINE Alu -9 167 2 2101 92 0 0 chr15 5670953 5671264 -80024490 + AluSc SINE Alu 1 311 0 250 268 18 36 chr15 5671759 5671871 -80023883 + CT-rich Low_complexity Low_complexity 3 112 0 532 262 55 75 chr15 5672206 5672363 -80023391 - HAL1 LINE L1 -1192 1315 1156 1710 110 110 11 chr15 5672363 5672644 -80023110 - AluSg SINE Alu 0 310 2 532 262 55 75 chr15 5672644 5673035 -80022719 - HAL1 LINE L1 -1351 1156 778 204 319 43 11 chr15 5673035 5673129 -80022625 + MER5B DNA MER1_type 23 119 -59 186 200 29 0 chr15 5673190 5673225 -80022529 - MER5B DNA MER1_type -134 44 9 432 225 7 63 chr15 5674642 5674784 -80020970 - L1MC4a LINE L1 -1973 5835 5702 250 326 7 0 chr15 5674976 5675114 -80020640 - L1P LINE L1 -726 5425 5287 24 0 0 0 chr15 5675466 5675490 -80020264 + AT_rich Low_complexity Low_complexity 1 24 0 2197 99 0 10 chr15 5675497 5675801 -80019953 + AluSq SINE Alu 1 301 -12 1975 71 4 0 chr15 5676219 5676471 -80019283 + AluSx SINE Alu 1 253 -59 4173 199 32 14 chr15 5676471 5677341 -80018413 - L1MA10 LINE L1 -39 6295 5410 21 71 0 0 chr15 5677762 5677804 -80017950 + AT_rich Low_complexity Low_complexity 1 42 0 623 312 28 43 chr15 5677812 5678376 -80017378 - L1M4 LINE L1 -1662 4484 3929 2182 116 3 0 chr15 5678391 5678702 -80017052 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5678785 5678834 -80016920 - L1MC4 LINE L1 -99 7943 7896 2231 114 0 9 chr15 5678834 5679149 -80016605 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5679149 5679350 -80016404 - L1MC4 LINE L1 -146 7896 7689 330 244 26 43 chr15 5679971 5680086 -80015668 - L1MC4a LINE L1 -391 7417 7305 2562 171 17 11 chr15 5680260 5680733 -80015021 - L1MB3 LINE L1 -233 5950 5475 579 304 84 4 chr15 5680792 5681019 -80014735 - MER119 DNA MER1_type -338 245 1 2127 62 0 117 chr15 5681425 5681777 -80013977 + AluY SINE Alu 1 311 0 666 294 21 0 chr15 5681835 5682029 -80013725 + L1MC5 LINE L1 6635 6832 -1129 727 213 40 109 chr15 5682075 5682404 -80013350 + L1MC5 LINE L1 6820 7125 -836 301 273 48 95 chr15 5682534 5682765 -80012989 + L1MC5 LINE L1 7308 7527 -434 2235 56 0 11 chr15 5682937 5683253 -80012501 - AluY SINE Alu 0 313 1 252 270 90 0 chr15 5684469 5684558 -80011196 - MLT1I LTR MaLR -243 166 70 2002 84 22 0 chr15 5686716 5686989 -80008765 - AluSx SINE Alu -14 298 20 2318 184 29 63 chr15 5687348 5687764 -80007990 + MLT1D LTR MaLR 1 397 -108 1783 168 3 3 chr15 5687764 5688073 -80007681 - AluJo SINE Alu -3 309 1 2318 184 29 63 chr15 5688073 5688179 -80007575 + MLT1D LTR MaLR 397 505 0 224 146 24 0 chr15 5690038 5690079 -80005675 + L2 LINE L2 3225 3266 -6 1920 137 0 0 chr15 5690671 5690963 -80004791 - AluJb SINE Alu -20 292 1 5217 201 36 16 chr15 5690976 5691541 -80004213 - L1MC3 LINE L1 -8 7777 7225 2344 85 3 0 chr15 5691541 5691847 -80003907 + AluY SINE Alu 1 307 -4 5217 201 36 16 chr15 5691847 5692196 -80003558 - L1MC3 LINE L1 -560 7225 6833 1928 174 21 6 chr15 5692196 5692535 -80003219 - MER2 DNA MER2_type 0 344 1 5217 201 36 16 chr15 5692535 5692767 -80002987 - L1MC3 LINE L1 -952 6833 6607 2158 113 7 0 chr15 5692774 5693075 -80002679 - AluSc SINE Alu -6 303 1 1183 133 6 0 chr15 5693075 5693256 -80002498 - AluSg/x SINE Alu -4 306 125 1292 202 0 8 chr15 5693476 5693733 -80002021 + AluJo SINE Alu 36 290 -22 261 335 112 22 chr15 5693977 5694156 -80001598 - MIR SINE MIR -48 214 20 1802 282 143 44 chr15 5694346 5695574 -80000180 + L2 LINE L2 1438 2786 -528 285 286 98 0 chr15 5695866 5695978 -79999776 + MER96 DNA MER1_type? 48 170 -5 320 299 9 9 chr15 5696332 5696439 -79999315 + MER112 DNA MER1_type 36 142 -118 312 328 24 16 chr15 5696530 5696655 -79999099 - MIR SINE MIR -62 146 21 280 233 33 22 chr15 5697109 5697199 -79998555 + MER5A DNA MER1_type 19 109 -80 24 32 0 0 chr15 5697717 5697748 -79998006 + AT_rich Low_complexity Low_complexity 1 31 0 3659 180 28 31 chr15 5697748 5698254 -79997500 - L1MB3 LINE L1 -7 6176 5673 2426 57 0 22 chr15 5698254 5698572 -79997182 - AluY SINE Alu 0 311 1 3659 180 28 31 chr15 5698572 5698865 -79996889 - L1MB3 LINE L1 -510 5673 5380 628 308 138 21 chr15 5699270 5699595 -79996159 + MLT1I LTR MaLR 47 409 0 2046 124 0 0 chr15 5700174 5700473 -79995281 - AluSc SINE Alu -2 307 9 2125 177 19 0 chr15 5700498 5700870 -79994884 + MLT1B LTR MaLR 12 390 0 185 218 109 18 chr15 5700951 5701006 -79994748 - L2 LINE L2 -62 3251 3192 1849 147 0 16 chr15 5701056 5701363 -79994391 + AluJb SINE Alu 1 302 -10 1754 164 3 10 chr15 5701373 5701671 -79994083 + AluJo SINE Alu 1 296 -16 255 271 27 59 chr15 5702492 5702620 -79993134 - MIR SINE MIR -37 171 48 635 254 11 16 chr15 5702787 5702972 -79992782 - L1MD2 LINE L1 -14 6739 6556 189 107 0 0 chr15 5702972 5703000 -79992754 + (TATG)n Simple_repeat Simple_repeat 4 31 0 513 243 95 7 chr15 5703002 5703150 -79992604 - L1MD2 LINE L1 -229 6524 6364 * 3445 210 28 38 chr15 5703142 5703576 -79992178 - L1MD2 LINE L1 -598 6155 5718 2335 80 0 0 chr15 5703576 5703875 -79991879 - AluSq SINE Alu -14 299 1 3445 210 28 38 chr15 5703875 5704929 -79990825 - L1MD2 LINE L1 -1035 5718 4674 2866 234 69 4 chr15 5704925 5705985 -79989769 - L1MD2 LINE L1 -3134 3406 2284 * 692 211 256 4 chr15 5705989 5706259 -79989495 - L1MD2 LINE L1 -4292 2248 1911 632 128 8 26 chr15 5706260 5706377 -79989377 - L1MB8 LINE L1 0 6178 6064 2391 78 0 0 chr15 5706518 5706825 -79988929 - AluY SINE Alu -4 307 1 22 35 0 0 chr15 5706831 5706860 -79988894 + AT_rich Low_complexity Low_complexity 1 29 0 3102 163 32 17 chr15 5706861 5707461 -79988293 - L1MB3 LINE L1 -2 6181 5573 229 303 46 0 chr15 5707504 5707613 -79988141 - L1MC5 LINE L1 -516 7445 7332 1048 217 14 0 chr15 5707720 5707932 -79987822 + MLT1B LTR MaLR 1 215 -175 653 213 0 0 chr15 5708076 5708198 -79987556 + FLAM_C SINE Alu 1 122 -11 942 9 0 0 chr15 5708216 5708323 -79987431 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1990 103 14 0 chr15 5708325 5708615 -79987139 - AluSx SINE Alu -18 294 1 221 271 17 17 chr15 5709406 5709524 -79986230 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 846 140 0 22 chr15 5709530 5709666 -79986088 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 5709895 5709916 -79985838 + AT_rich Low_complexity Low_complexity 1 21 0 607 280 84 108 chr15 5711148 5711777 -79983977 + HAL1b LINE L1 56 532 -816 3560 238 36 4 chr15 5711834 5712659 -79983095 + MER97a DNA MER1_type? 2 853 -41 365 348 29 47 chr15 5712989 5713480 -79982274 + L1MC/D LINE L1 2119 2563 -3652 263 267 74 48 chr15 5713613 5713924 -79981830 + L1MC/D LINE L1 2746 3064 -3151 559 307 76 57 chr15 5713968 5714336 -79981418 + L1MC/D LINE L1 3146 3520 -2695 361 342 26 0 chr15 5714343 5714460 -79981294 + L1MC/D LINE L1 3564 3683 -2532 270 270 88 65 chr15 5714554 5714895 -79980859 + L1MC/D LINE L1 4972 5320 -895 268 175 53 184 chr15 5714907 5715021 -79980733 + L1MC/D LINE L1 5483 5581 -2296 1078 315 81 34 chr15 5715320 5716145 -79979609 - L1M4 LINE L1 -1828 4318 3455 1199 201 123 9 chr15 5716229 5716547 -79979207 - MLT1A1 LTR MaLR -11 354 1 299 240 0 13 chr15 5717050 5717125 -79978629 + MIR SINE MIR 14 87 -175 209 247 76 101 chr15 5718841 5718999 -79976755 + MIR3 SINE MIR 23 176 -32 5544 171 43 1 chr15 5719361 5721299 -79974455 + L1PA16 LINE L1 4130 6157 -9 234 0 0 0 chr15 5723080 5723106 -79972648 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 293 225 0 101 chr15 5723461 5723550 -79972204 - MIR SINE MIR -70 192 113 228 35 0 0 chr15 5723984 5724013 -79971741 + (TC)n Simple_repeat Simple_repeat 1 29 0 306 73 0 0 chr15 5724048 5724089 -79971665 + (TC)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr15 5725623 5725650 -79970104 + AT_rich Low_complexity Low_complexity 1 27 0 1559 130 138 8 chr15 5725650 5725904 -79969850 - AluSg1 SINE Alu -22 287 1 1875 153 91 18 chr15 5725946 5726286 -79969468 - MLT1A1 LTR MaLR 0 365 1 2278 170 118 26 chr15 5726363 5726862 -79968892 - MLT1F1 LTR MaLR -2 565 21 216 0 0 0 chr15 5726867 5726891 -79968863 + (TA)n Simple_repeat Simple_repeat 2 25 0 2228 113 3 13 chr15 5726893 5727194 -79968560 - AluSx SINE Alu -14 298 1 1024 268 54 62 chr15 5727337 5727406 -79968348 - L1ME3A LINE L1 -219 5951 5883 2307 96 0 0 chr15 5727406 5727697 -79968057 - AluSx SINE Alu -17 295 5 1024 268 54 62 chr15 5727697 5728292 -79967462 - L1ME3A LINE L1 -287 5883 5292 603 281 133 0 chr15 5728353 5728563 -79967191 + MIR SINE MIR 3 240 -22 1808 96 137 4 chr15 5729284 5729554 -79966200 + AluSq SINE Alu 2 307 -6 249 284 128 27 chr15 5733287 5733435 -79962319 - MIR SINE MIR -31 231 69 216 135 0 0 chr15 5737318 5737355 -79958399 + (T)n Simple_repeat Simple_repeat 1 37 0 322 299 51 26 chr15 5737594 5737711 -79958043 + L1ME LINE L1 66 185 -5934 377 337 155 47 chr15 5737753 5738004 -79957750 + L1ME LINE L1 4730 5037 -1092 2378 96 3 3 chr15 5738004 5738306 -79957448 + AluSx SINE Alu 2 303 -9 377 337 155 47 chr15 5738306 5738434 -79957320 + L1ME LINE L1 5037 5150 -979 450 274 125 0 chr15 5738436 5738604 -79957150 + L1ME LINE L1 5182 5370 -759 384 313 42 0 chr15 5738652 5738818 -79956936 + L1ME LINE L1 5448 5620 -533 2146 176 60 56 chr15 5738836 5739354 -79956400 - MLT2B1 LTR ERVL 0 520 1 329 218 39 13 chr15 5739354 5739432 -79956322 - MER112 DNA MER1_type -60 200 121 1418 184 90 15 chr15 5739739 5740005 -79955749 - AluJb SINE Alu -12 290 5 224 298 0 18 chr15 5740257 5740314 -79955440 + L2 LINE L2 3200 3255 -17 2010 151 10 0 chr15 5740342 5740641 -79955113 - AluJb SINE Alu -2 310 9 469 243 53 13 chr15 5741171 5741323 -79954431 - MER103 DNA DNA -3 163 6 186 316 53 0 chr15 5741528 5741585 -79954169 + MIR SINE MIR 91 150 -58 253 314 81 0 chr15 5742558 5742644 -79953110 - MIR3 SINE MIR -45 163 71 883 266 26 49 chr15 5742732 5743081 -79952673 - MLT2C1 LTR ERVL -2 395 55 347 255 235 13 chr15 5743605 5743758 -79951996 + MER5A DNA MER1_type 3 189 0 401 245 151 69 chr15 5743774 5743814 -79951940 - MER5A DNA MER1_type -8 181 146 2351 105 0 0 chr15 5743814 5744118 -79951636 - AluSp SINE Alu -9 304 1 401 245 151 69 chr15 5744118 5744236 -79951518 - MER5A DNA MER1_type -43 146 10 440 250 27 27 chr15 5744283 5744395 -79951359 + MIR SINE MIR 39 150 -112 1764 181 0 3 chr15 5744400 5744692 -79951062 - AluJo SINE Alu -13 299 9 2074 113 3 3 chr15 5744720 5745024 -79950730 + AluSx SINE Alu 1 304 0 5219 195 43 19 chr15 5745055 5745609 -79950145 + L1MB3 LINE L1 3984 4523 -1660 2227 147 31 3 chr15 5745609 5745963 -79949791 - THE1B LTR MaLR 0 364 1 5219 195 43 19 chr15 5745963 5747546 -79948208 + L1MB3 LINE L1 4523 6176 -7 1274 181 76 24 chr15 5747620 5747869 -79947885 + AluJo SINE Alu 50 311 -1 457 285 48 5 chr15 5748535 5748721 -79947033 - L1ME3A LINE L1 -5 6165 5972 585 119 0 0 chr15 5748873 5748957 -79946797 + Alu SINE Alu 218 301 -10 837 292 144 41 chr15 5749186 5749609 -79946145 - L1MEc LINE L1 -2505 3710 3229 2399 74 10 7 chr15 5749609 5749919 -79945835 - AluY SINE Alu 0 311 1 837 292 144 41 chr15 5749919 5749981 -79945773 - L1MEc LINE L1 -2986 3229 3175 6572 83 11 7 chr15 5750004 5751327 -79944427 - L1PA10 LINE L1 0 6168 4850 350 283 24 72 chr15 5752123 5752194 -79943560 - LTR41 LTR ERVL -615 158 85 2339 80 0 10 chr15 5752194 5752522 -79943232 + AluY SINE Alu 1 325 0 350 283 24 72 chr15 5752522 5752613 -79943141 - LTR41 LTR ERVL -688 85 1 405 39 0 0 chr15 5752738 5752789 -79942965 + (TG)n Simple_repeat Simple_repeat 2 52 0 654 314 73 17 chr15 5752894 5753248 -79942506 - L1MEc LINE L1 -3601 2614 2283 715 186 122 5 chr15 5753279 5753467 -79942287 - MLT1B LTR MaLR 0 390 181 925 91 8 0 chr15 5753495 5753616 -79942138 - AluSp/q SINE Alu -14 299 178 822 134 474 21 chr15 5753667 5753861 -79941893 - LTR12 LTR ERV1 -507 207 55 244 250 0 0 chr15 5753861 5753913 -79941841 - LTR30 LTR ERV1 -670 52 1 248 149 85 0 chr15 5754109 5754156 -79941598 + L2 LINE L2 3203 3253 -60 1992 189 36 5 chr15 5754203 5754595 -79941159 + MLT2D LTR ERVL 3 406 -8 833 242 63 62 chr15 5755465 5755703 -79940051 - MER77 LTR ERV1 -3 602 454 2586 60 0 16 chr15 5755703 5756018 -79939736 + AluY SINE Alu 1 310 -1 833 242 63 62 chr15 5756018 5756197 -79939557 - MER77 LTR ERV1 -151 454 277 320 263 94 60 chr15 5756221 5756486 -79939268 - MER21B LTR ERV1 -400 205 57 771 196 67 11 chr15 5756739 5756918 -79938836 - MER5A DNA MER1_type 0 189 1 485 227 117 19 chr15 5757713 5757867 -79937887 + MER5A DNA MER1_type 1 169 -20 22 70 0 0 chr15 5758246 5758289 -79937465 + AT_rich Low_complexity Low_complexity 1 43 0 1896 190 0 0 chr15 5758765 5759065 -79936689 + AluJb SINE Alu 1 300 -12 208 247 0 14 chr15 5759074 5759147 -79936607 + A-rich Low_complexity Low_complexity 3 74 0 1547 192 95 24 chr15 5759677 5760047 -79935707 - MSTD LTR MaLR 0 396 1 2427 105 0 0 chr15 5760693 5760998 -79934756 - AluSg SINE Alu -4 306 2 414 0 0 0 chr15 5761126 5761172 -79934582 + (TG)n Simple_repeat Simple_repeat 2 47 0 414 267 109 48 chr15 5761486 5761651 -79934103 - MER5B DNA MER1_type -1 177 3 592 231 105 31 chr15 5762872 5763200 -79932554 + L1MCc LINE L1 1354 1874 -4961 * 765 221 76 42 chr15 5763173 5763206 -79932548 + L1M4 LINE L1 5143 5173 -1768 1770 162 43 16 chr15 5763206 5763323 -79932431 + AluJb SINE Alu 1 113 -199 195 42 0 0 chr15 5763323 5763347 -79932407 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1770 162 43 16 chr15 5763347 5763532 -79932222 + AluJb SINE Alu 113 311 -1 765 221 76 42 chr15 5763532 5763828 -79931926 + L1M4 LINE L1 5173 5483 -1458 1847 154 104 82 chr15 5763944 5764301 -79931453 - MLT1C LTR MaLR -4 463 92 1923 114 81 0 chr15 5764301 5764573 -79931181 - AluSc SINE Alu -15 294 1 1847 154 104 82 chr15 5764573 5764668 -79931086 - MLT1C LTR MaLR -375 92 1 1202 160 9 27 chr15 5766812 5767037 -79928717 - MLT1A1 LTR MaLR 0 365 145 279 173 0 0 chr15 5767051 5767103 -79928651 + CT-rich Low_complexity Low_complexity 3 54 0 2012 98 0 52 chr15 5767109 5767396 -79928358 - AluSg SINE Alu -38 272 1 908 124 20 13 chr15 5767396 5767549 -79928205 - MLT1A1 LTR MaLR -209 156 3 233 298 67 19 chr15 5767692 5767796 -79927958 + L1ME4a LINE L1 5959 6067 -54 1057 153 5 20 chr15 5769379 5769582 -79926172 - MER96B DNA MER1_type? -165 252 53 294 327 113 37 chr15 5769605 5770072 -79925682 + L1M4 LINE L1 4048 4593 -1553 1905 152 7 7 chr15 5770072 5770368 -79925386 + AluSx SINE Alu 1 296 -16 294 327 113 37 chr15 5770368 5770633 -79925121 + L1M4 LINE L1 4593 4836 -1310 2361 81 0 29 chr15 5770660 5770967 -79924787 + AluSc SINE Alu 1 298 -11 363 250 13 0 chr15 5770984 5771060 -79924694 + MER81 DNA DNA 2 78 -36 394 273 169 26 chr15 5771134 5771288 -79924466 + MER5B DNA MER1_type 3 178 0 533 271 72 62 chr15 5771914 5772346 -79923408 + HAL1 LINE L1 1239 1674 -833 2521 84 0 0 chr15 5774183 5774493 -79921261 + AluY SINE Alu 2 311 0 186 275 50 0 chr15 5774527 5774607 -79921147 + L2 LINE L2 2570 2653 -661 2307 164 13 0 chr15 5774687 5775077 -79920677 - MSTD LTR MaLR 0 396 2 360 0 0 0 chr15 5777690 5777730 -79918024 + (TG)n Simple_repeat Simple_repeat 2 41 0 415 163 0 22 chr15 5778543 5778635 -79917119 + CT-rich Low_complexity Low_complexity 3 92 0 195 42 0 0 chr15 5778635 5778659 -79917095 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 5778769 5778791 -79916963 + GC_rich Low_complexity Low_complexity 1 22 0 3152 193 22 3 chr15 5779189 5779837 -79915917 - L1MB5 LINE L1 -1 6173 5514 239 278 0 0 chr15 5780398 5780452 -79915302 + MER53 DNA DNA 1 54 -135 605 152 32 70 chr15 5780454 5780612 -79915142 + L1MB2 LINE L1 6020 6171 0 284 215 0 0 chr15 5780613 5780678 -79915076 - MER53 DNA DNA -33 156 92 186 314 0 0 chr15 5783576 5783627 -79912127 + MIR SINE MIR 98 148 -60 2257 106 0 3 chr15 5783698 5783990 -79911764 - AluSx SINE Alu -21 291 1 3256 171 9 28 chr15 5784366 5785034 -79910720 + L1MB3 LINE L1 5528 6182 -1 949 167 27 45 chr15 5785683 5785905 -79909849 - MER20 DNA MER1_type -1 218 1 2088 131 7 3 chr15 5788353 5788659 -79907095 + AluSc SINE Alu 1 307 -2 2500 100 0 0 chr15 5788669 5788979 -79906775 + AluSg SINE Alu 1 310 0 231 291 139 12 chr15 5788983 5789148 -79906606 - MLT1J LTR MaLR -92 419 234 227 262 49 0 chr15 5789790 5789851 -79905903 - MLT1L LTR MaLR -351 264 201 343 289 39 31 chr15 5790268 5790396 -79905358 - MIR SINE MIR -85 177 49 306 283 87 3 chr15 5790469 5790660 -79905094 - MIR SINE MIR -3 259 2 381 320 71 63 chr15 5792074 5792562 -79903192 - L1MC/D LINE L1 -527 5594 5311 1570 136 99 0 chr15 5792562 5792864 -79902890 - L1MA9 LINE L1 -5 6307 5976 381 320 71 63 chr15 5792864 5792911 -79902843 - L1MC/D LINE L1 -810 5311 5266 2072 139 0 3 chr15 5793117 5793411 -79902343 + AluSx SINE Alu 1 293 -19 371 318 81 52 chr15 5793442 5793864 -79901890 - L1MC/D LINE L1 -1101 5045 4637 2395 108 0 0 chr15 5793864 5794169 -79901585 - AluSx SINE Alu -7 305 1 371 318 81 52 chr15 5794169 5794637 -79901117 - L1MC/D LINE L1 -1509 4637 4129 2796 222 82 68 chr15 5794747 5795582 -79900172 - L1MC5 LINE L1 -112 7849 6992 2650 63 0 0 chr15 5795582 5795885 -79899869 + AluY SINE Alu 1 303 -8 2796 222 82 68 chr15 5795885 5796221 -79899533 - L1MC5 LINE L1 -969 6992 6662 1463 246 71 62 chr15 5796238 5796775 -79898979 + MLT1F LTR MaLR 1 542 0 28 29 0 0 chr15 5797154 5797189 -79898565 + AT_rich Low_complexity Low_complexity 1 35 0 394 288 107 40 chr15 5797331 5797613 -79898141 - L1MC5 LINE L1 -359 5762 5643 235 298 0 39 chr15 5799248 5799352 -79896402 + L2 LINE L2 2926 3025 -288 757 206 75 33 chr15 5802384 5802598 -79893156 + MER58A DNA MER1_type 1 223 -1 667 180 29 41 chr15 5802690 5802862 -79892892 - MER3 DNA MER1_type -30 179 10 1765 153 31 59 chr15 5805116 5805437 -79890317 + AluJb SINE Alu 1 312 0 2485 70 0 7 chr15 5805484 5805785 -79889969 + AluSp SINE Alu 1 299 -14 4388 189 31 2 chr15 5807873 5808783 -79886971 - L1MA8 LINE L1 -4 6287 5352 1656 198 64 1 chr15 5809582 5810071 -79885683 - MER68 LTR ERV1 0 562 8 224 338 14 0 chr15 5810120 5810191 -79885563 + MIR SINE MIR 50 121 -141 1027 200 9 9 chr15 5811325 5811540 -79884214 + MER20 DNA MER1_type 3 217 -2 2422 96 0 6 chr15 5811556 5811870 -79883884 - AluSq SINE Alu -1 312 1 2244 109 0 13 chr15 5812811 5813113 -79882641 + AluSq SINE Alu 1 298 -15 845 209 0 23 chr15 5815140 5815312 -79880442 + AluJo SINE Alu 1 168 -144 240 152 0 0 chr15 5815314 5815360 -79880394 + Alu SINE Alu 84 129 -4 238 302 174 0 chr15 5817245 5817331 -79878423 - MIR SINE MIR -115 147 47 184 277 126 63 chr15 5817413 5817452 -79878302 + L3 LINE CR1 1298 1333 -244 500 198 27 9 chr15 5817452 5817563 -79878191 - MER81 DNA DNA 0 114 2 184 277 126 63 chr15 5817563 5817682 -79878072 + L3 LINE CR1 1333 1466 -111 212 204 23 0 chr15 5819084 5819128 -79876626 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 321 320 0 0 chr15 5819128 5819206 -79876548 - L2 LINE L2 0 3272 3195 699 294 124 8 chr15 5819682 5820046 -79875708 - MLT1J2 LTR MaLR -7 443 38 319 167 0 0 chr15 5820972 5821026 -79874728 - MIR SINE MIR -131 131 78 1417 254 58 32 chr15 5823024 5823492 -79872262 - L1MB3 LINE L1 -6 6177 5686 322 135 0 0 chr15 5823593 5823645 -79872109 + Alu SINE Alu 239 290 -12 278 224 0 33 chr15 5824910 5825093 -79870661 + (TG)n Simple_repeat Simple_repeat 1 177 0 245 242 8 0 chr15 5825112 5825240 -79870514 + (TG)n Simple_repeat Simple_repeat 1 129 0 297 239 28 0 chr15 5825258 5825367 -79870387 + (TG)n Simple_repeat Simple_repeat 1 112 0 2354 66 0 7 chr15 5826683 5826985 -79868769 + AluY SINE Alu 1 300 -11 2746 9 0 0 chr15 5829610 5829948 -79865806 + L1HS LINE L1 5815 6152 -3 353 257 48 67 chr15 5829948 5830053 -79865701 + L1MDa LINE L1 2382 2517 -4056 181 125 0 50 chr15 5836904 5836944 -79858810 + MER5A DNA MER1_type 84 121 -68 660 255 11 21 chr15 5837300 5837488 -79858266 + MER5A DNA MER1_type 4 189 0 198 0 0 0 chr15 5839030 5839052 -79856702 + (GAGAA)n Simple_repeat Simple_repeat 4 25 0 2170 109 0 7 chr15 5839401 5839704 -79856050 - AluSx SINE Alu -11 301 1 1060 147 11 16 chr15 5839807 5839991 -79855763 - FRAM SINE Alu -1 175 1 343 202 12 36 chr15 5842113 5842197 -79853557 + L1MC/D LINE L1 5680 5761 -2047 232 294 24 8 chr15 5842327 5842453 -79853301 + (CACCC)n Simple_repeat Simple_repeat 3 130 0 279 283 81 30 chr15 5844139 5844238 -79851516 + MER5A DNA MER1_type 84 187 -2 212 214 18 36 chr15 5844302 5844358 -79851396 + L2 LINE L2 1861 1915 -1399 222 236 28 66 chr15 5844692 5844798 -79850956 + L2 LINE L2 2889 2990 -282 948 178 6 0 chr15 5846038 5846212 -79849542 - L1PA12 LINE L1 -4509 3072 2898 383 235 130 9 chr15 5846365 5846480 -79849274 - MIR SINE MIR -17 245 117 238 336 26 18 chr15 5846917 5847030 -79848724 + MIR SINE MIR 109 222 -40 2070 115 0 38 chr15 5848345 5848659 -79847095 + AluSx SINE Alu 1 302 -10 509 227 84 45 chr15 5848733 5848887 -79846867 - MER103 DNA DNA -2 164 5 825 194 0 0 chr15 5849338 5849518 -79846236 + (TG)n Simple_repeat Simple_repeat 1 180 0 180 279 162 0 chr15 5851027 5851095 -79844659 + L2 LINE L2 3184 3262 -10 303 344 29 70 chr15 5854522 5854763 -79840991 + HAL1 LINE L1 822 1052 -1455 698 176 80 75 chr15 5855088 5855239 -79840515 + L1MC5 LINE L1 3400 3549 -2597 1822 160 3 7 chr15 5855239 5855545 -79840209 + AluJo SINE Alu 1 305 -7 1851 122 7 53 chr15 5855550 5855854 -79839900 + AluSx SINE Alu 1 290 -22 698 176 80 75 chr15 5855854 5855935 -79839819 + L1MC5 LINE L1 3552 3639 -2507 1909 198 57 18 chr15 5855937 5856133 -79839621 + L1MC5 LINE L1 3770 3957 -2189 2501 65 0 3 chr15 5856133 5856441 -79839313 + AluY SINE Alu 1 307 -4 1909 198 57 18 chr15 5856441 5856733 -79839021 + L1MC5 LINE L1 3957 4277 -1869 3883 158 6 39 chr15 5857822 5858546 -79837208 - L1MD1 LINE L1 -3 6239 5540 1466 86 5 32 chr15 5858881 5859101 -79836653 - AluSg/x SINE Alu -12 298 85 3835 138 320 96 chr15 5859532 5860914 -79834840 - pTR5 LTR ERV1 -1 2437 745 2184 108 10 0 chr15 5860914 5861210 -79834544 + AluSx SINE Alu 10 308 -4 513 232 51 133 chr15 5861535 5861888 -79833866 - L1M4 LINE L1 -1768 4378 4055 2550 62 0 0 chr15 5862503 5862812 -79832942 + AluY SINE Alu 1 309 -2 1652 245 114 23 chr15 5862814 5863385 -79832369 - L1MEc LINE L1 -5731 665 43 715 129 20 0 chr15 5863681 5863806 -79831948 - AluSg/x SINE Alu 0 307 181 1225 183 40 5 chr15 5863906 5864317 -79831437 + L1MC5 LINE L1 5093 5526 -648 421 186 72 0 chr15 5864306 5864403 -79831351 + L1M3 LINE L1 5423 5526 -654 * 3361 177 36 7 chr15 5864392 5865122 -79830632 + L1MB8 LINE L1 5423 6173 -5 1146 175 0 28 chr15 5865176 5865387 -79830367 + MER2 DNA MER2_type 6 210 -135 2246 93 20 7 chr15 5865677 5865979 -79829775 - AluSx SINE Alu -6 306 1 333 266 21 50 chr15 5866919 5867060 -79828694 - MIR SINE MIR -39 169 32 223 119 30 30 chr15 5867702 5867769 -79827985 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 2217 84 3 3 chr15 5868029 5868371 -79827383 + AluSp SINE Alu 1 342 0 342 235 67 67 chr15 5868371 5868550 -79827204 + L1MC5 LINE L1 5774 5952 -1856 4034 128 44 39 chr15 5869060 5869384 -79826370 - L1PA16 LINE L1 -5 6161 5840 2494 74 0 0 chr15 5869384 5869683 -79826071 - AluY SINE Alu -12 299 1 4034 128 44 39 chr15 5869683 5870083 -79825671 - L1PA16 LINE L1 -326 5840 5433 828 204 95 36 chr15 5870139 5870443 -79825311 + L1MC5 LINE L1 6640 6961 -1000 246 32 0 0 chr15 5870528 5870559 -79825195 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2109 87 45 0 chr15 5870560 5870826 -79824928 - AluSg SINE Alu -32 278 1 1095 166 73 106 chr15 5870844 5871212 -79824542 - LTR37A LTR ERV1 -52 374 19 261 0 0 0 chr15 5871212 5871241 -79824513 + (T)n Simple_repeat Simple_repeat 1 29 0 262 333 21 0 chr15 5871313 5871409 -79824345 - MER31-int LTR ERV1 -735 4201 4104 2341 84 0 10 chr15 5871752 5872048 -79823706 - AluSg SINE Alu -15 295 3 1770 154 14 17 chr15 5874175 5874467 -79821287 + AluJb SINE Alu 21 311 -1 1036 220 130 43 chr15 5874605 5874951 -79820803 + MER92A LTR ERV1 37 412 0 2567 40 0 17 chr15 5875727 5876029 -79819725 - AluY SINE Alu -14 297 1 331 213 58 85 chr15 5876480 5876528 -79819226 + L1M4 LINE L1 2787 2835 -3311 2373 78 7 0 chr15 5876528 5876851 -79818903 + AluSx SINE Alu 1 325 0 331 213 58 85 chr15 5876851 5876988 -79818766 + L1M4 LINE L1 2835 2969 -3177 3760 226 70 8 chr15 5877218 5878195 -79817559 + L1PB1 LINE L1 6 1042 -5821 349 161 16 0 chr15 5878203 5878265 -79817489 + L1PB1 LINE L1 1094 1156 -5707 15296 188 15 8 chr15 5878270 5883749 -79812005 + L1PB1 LINE L1 1311 6866 -1 937 266 202 12 chr15 5884929 5885440 -79810314 + L1M4 LINE L1 3709 4316 -1830 2015 84 0 4 chr15 5885440 5885690 -79810064 + AluY SINE Alu 1 249 -62 255 31 0 0 chr15 5885843 5885875 -79809879 + (TG)n Simple_repeat Simple_repeat 1 32 0 825 171 39 54 chr15 5885928 5886111 -79809643 + MLT1A1 LTR MaLR 164 345 -20 1773 175 63 29 chr15 5886111 5886494 -79809260 - MSTD LTR MaLR 0 396 1 825 171 39 54 chr15 5886494 5886515 -79809239 + MLT1A1 LTR MaLR 345 365 0 2299 61 0 7 chr15 5889669 5889947 -79805807 + AluY SINE Alu 1 276 -35 215 91 0 23 chr15 5889947 5889991 -79805763 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 226 274 0 53 chr15 5890603 5890698 -79805056 - L1ME3A LINE L1 0 6170 6081 1488 259 61 13 chr15 5890829 5891307 -79804447 - L1ME3A LINE L1 -202 5968 5468 774 275 100 20 chr15 5891309 5891658 -79804096 + HAL1 LINE L1 1688 2064 -443 6000 239 67 32 chr15 5891676 5892216 -79803538 - L1ME3A LINE L1 -896 5250 4730 2132 119 3 0 chr15 5892216 5892502 -79803252 - AluSx SINE Alu -20 292 6 6000 239 67 32 chr15 5892502 5892590 -79803164 - L1ME3A LINE L1 -1416 4730 4647 2121 114 0 26 chr15 5892590 5892897 -79802857 - AluSq SINE Alu -14 299 1 6000 239 67 32 chr15 5892897 5894371 -79801383 - L1ME3A LINE L1 -1499 4647 3073 6374 84 10 18 chr15 5894378 5895152 -79800602 - L1PA8 LINE L1 0 6291 5528 2351 92 0 0 chr15 5895152 5895455 -79800299 + AluY SINE Alu 1 303 -8 6374 84 10 18 chr15 5895455 5895632 -79800122 - L1PA8 LINE L1 -763 5528 5351 819 133 63 0 chr15 5895610 5895768 -79799986 - L1MA7 LINE L1 -115 6176 6009 * 222 186 17 51 chr15 5896603 5896662 -79799092 + MIR SINE MIR 74 130 -78 5301 165 22 6 chr15 5896834 5897847 -79797907 - L1MB3 LINE L1 -1 6182 5150 243 176 44 59 chr15 5897936 5898004 -79797750 + MER96B DNA MER1_type? 109 175 0 1965 144 44 18 chr15 5898108 5898449 -79797305 - MLT1A1 LTR MaLR -15 350 1 1339 205 28 37 chr15 5898505 5898863 -79796891 + L1MB8 LINE L1 5825 6178 0 1487 176 89 110 chr15 5899288 5899725 -79796029 - LTR12 LTR ERV1 -234 480 53 233 235 0 0 chr15 5899725 5899776 -79795978 - LTR30 LTR ERV1 -670 52 2 359 303 118 11 chr15 5900126 5900304 -79795450 - MER117 DNA MER1_type 0 197 1 1213 245 109 75 chr15 5900595 5901207 -79794547 + L1ME3A LINE L1 5514 6146 -24 2098 137 0 0 chr15 5901253 5901560 -79794194 + AluSx SINE Alu 3 309 -3 1931 218 70 23 chr15 5902025 5902396 -79793358 + MER74B LTR ERVL 66 471 -151 2261 120 15 29 chr15 5902396 5902738 -79793016 + MER1B DNA MER1_type 1 337 0 1931 218 70 23 chr15 5902738 5902898 -79792856 + MER74B LTR ERVL 471 622 0 5931 213 5 9 chr15 5903499 5904802 -79790952 - L1 LINE L1 -1983 4163 2866 6926 42 1 2 chr15 5904802 5905654 -79790100 - L1P LINE L1 -973 5173 4323 321 255 140 32 chr15 5906173 5906197 -79789557 + L2 LINE L2 3099 3119 -153 2297 122 0 0 chr15 5906197 5906509 -79789245 - AluSx SINE Alu 0 312 1 321 255 140 32 chr15 5906509 5906641 -79789113 + L2 LINE L2 3119 3272 0 2936 54 8 3 chr15 5907179 5907549 -79788205 - L1PA8 LINE L1 -1 6171 5800 3123 206 93 18 chr15 5907567 5908328 -79787426 + MER21B LTR ERV1 20 837 -26 1920 127 22 0 chr15 5910575 5910850 -79784904 + AluJb SINE Alu 6 286 -26 685 260 142 31 chr15 5910866 5911154 -79784600 - MLT1I LTR MaLR -89 320 1 299 252 63 47 chr15 5911155 5911282 -79784472 + HAL1b LINE L1 386 514 -834 382 237 89 35 chr15 5911326 5911495 -79784259 + L1MCc LINE L1 25 202 -6221 563 247 17 23 chr15 5911528 5911702 -79784052 + L1MCc LINE L1 1469 1641 -5300 * 1283 236 73 45 chr15 5911700 5912082 -79783672 + L1M4 LINE L1 3791 4183 -1963 2923 155 37 41 chr15 5912084 5912626 -79783128 + MLT2B3 LTR ERVL 1 540 -14 1256 249 89 8 chr15 5912627 5913120 -79782634 + L1M4 LINE L1 4185 4717 -1429 2304 96 3 0 chr15 5914465 5914758 -79780996 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 5914882 5914910 -79780844 + AT_rich Low_complexity Low_complexity 1 28 0 206 360 0 22 chr15 5914938 5915027 -79780727 + L3b LINE CR1 1397 1483 -100 1760 148 3 25 chr15 5916293 5916576 -79779178 + AluJo SINE Alu 29 305 -7 1326 224 22 102 chr15 5916576 5917066 -79778688 + L1MB8 LINE L1 3482 3932 -2214 1125 213 87 8 chr15 5917075 5917442 -79778312 - L1M4 LINE L1 -816 5330 4935 * 3710 170 38 57 chr15 5917439 5917710 -79778044 + L1MB8 LINE L1 5368 5643 -535 328 109 0 0 chr15 5917710 5917756 -79777998 - MADE1 DNA Mariner 0 80 35 3710 170 38 57 chr15 5917756 5918240 -79777514 + L1MB8 LINE L1 5643 6152 -26 2145 111 3 14 chr15 5918252 5918549 -79777205 + AluY SINE Alu 1 294 -17 2175 104 60 11 chr15 5918549 5918896 -79776858 - MSTA LTR MaLR -64 364 1 235 250 31 0 chr15 5918945 5919009 -79776745 + MER63 DNA MER1_type 997 1062 0 1429 177 141 52 chr15 5919930 5919983 -79775771 + MSTD LTR MaLR 1 48 -348 2409 87 3 3 chr15 5919983 5920295 -79775459 + AluSx SINE Alu 1 312 0 1429 177 141 52 chr15 5920295 5920603 -79775151 + MSTD LTR MaLR 48 394 -2 244 306 20 10 chr15 5920695 5920793 -79774961 + MIR SINE MIR 156 254 -8 215 31 31 0 chr15 5920797 5920829 -79774925 + (CAT)n Simple_repeat Simple_repeat 1 33 0 208 226 38 0 chr15 5921299 5921352 -79774402 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 1445 170 4 61 chr15 5921681 5921958 -79773796 + AluJo SINE Alu 29 289 -23 1590 162 26 26 chr15 5921961 5922270 -79773484 - AluSx SINE Alu -3 309 1 289 225 0 42 chr15 5923508 5923579 -79772175 - L1MB8 LINE L1 -168 6010 5943 585 310 119 29 chr15 5923601 5924291 -79771463 + L1MC4a LINE L1 3341 4092 -2054 21 0 0 0 chr15 5925238 5925259 -79770495 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 5925505 5925534 -79770220 + AT_rich Low_complexity Low_complexity 1 29 0 551 271 78 53 chr15 5925536 5925857 -79769897 + L1MC4a LINE L1 5291 5619 -2189 211 213 53 53 chr15 5925909 5925984 -79769770 + L2 LINE L2 3231 3305 -8 341 248 41 92 chr15 5925984 5926014 -79769740 + L1MC4a LINE L1 5675 5705 -2103 2039 127 13 13 chr15 5926014 5926314 -79769440 + AluJb SINE Alu 4 303 -9 2307 79 0 26 chr15 5926314 5926618 -79769136 + AluSq SINE Alu 1 296 -17 341 248 41 92 chr15 5926618 5926804 -79768950 + L1MC4a LINE L1 5703 5881 -1927 411 21 0 0 chr15 5926877 5926925 -79768829 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 326 10 77 chr15 5927087 5927492 -79768262 + L1ME4a LINE L1 4456 4833 -1313 306 256 114 31 chr15 5928239 5928493 -79767261 + L1ME4a LINE L1 5119 5393 -753 592 261 84 28 chr15 5928549 5928798 -79766956 + L1ME4a LINE L1 5381 5643 -478 307 276 113 15 chr15 5928842 5928946 -79766808 + L1ME4a LINE L1 5741 5833 -288 2023 122 49 0 chr15 5928946 5929233 -79766521 + AluSx SINE Alu 1 301 -11 307 276 113 15 chr15 5929233 5929331 -79766423 + L1ME4a LINE L1 5833 5963 -158 30 89 0 0 chr15 5929446 5929525 -79766229 + AT_rich Low_complexity Low_complexity 1 79 0 1979 183 38 19 chr15 5929610 5930030 -79765724 - MSTA LTR MaLR 0 428 1 286 291 31 24 chr15 5930037 5930164 -79765590 - MIR3 SINE MIR -78 130 3 1449 102 69 5 chr15 5931337 5931553 -79764201 - MER30 DNA MER1_type 0 230 1 1322 72 17 17 chr15 5931587 5931768 -79763986 - MER30 DNA MER1_type -49 181 1 1391 223 113 46 chr15 5932745 5933328 -79762426 - L1MC5 LINE L1 -28 7933 7312 2310 83 17 0 chr15 5933357 5933646 -79762108 - AluSc SINE Alu -15 294 1 843 201 57 44 chr15 5933659 5933888 -79761866 - L1MC5 LINE L1 -722 7239 7008 1095 166 73 106 chr15 5934081 5934449 -79761305 + LTR37A LTR ERV1 19 374 -52 2109 87 45 0 chr15 5934467 5934733 -79761021 + AluSg SINE Alu 1 278 -32 213 65 0 0 chr15 5934734 5934765 -79760989 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 828 204 95 36 chr15 5934849 5935153 -79760601 - L1MC5 LINE L1 -1000 6961 6640 2896 127 23 21 chr15 5935209 5935680 -79760074 + L1PA14 LINE L1 5433 5904 -257 2423 157 26 28 chr15 5937711 5938137 -79757617 + MSTB LTR MaLR 1 425 -1 2237 154 24 0 chr15 5938240 5938623 -79757131 - L1MB3 LINE L1 0 6183 5792 207 0 0 0 chr15 5939953 5939976 -79755778 + (CA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr15 5941250 5941270 -79754484 + (CAT)n Simple_repeat Simple_repeat 3 22 0 971 188 36 5 chr15 5945369 5945561 -79750193 + MER82 DNA MER2_type 7 204 -449 1673 211 111 13 chr15 5945802 5945931 -79749823 + MER82 DNA MER2_type 227 342 -311 189 0 0 0 chr15 5945931 5945952 -79749802 + (CA)n Simple_repeat Simple_repeat 2 22 0 1673 211 111 13 chr15 5945952 5946211 -79749543 + MER82 DNA MER2_type 342 653 0 2178 131 0 3 chr15 5946634 5946939 -79748815 - AluSx SINE Alu -8 304 1 401 179 12 0 chr15 5948488 5948572 -79747182 + GA-rich Low_complexity Low_complexity 1 85 0 2378 76 3 0 chr15 5948881 5949171 -79746583 - AluY SINE Alu -17 294 4 2119 191 6 0 chr15 5949942 5950303 -79745451 + MLT1A1 LTR MaLR 3 365 0 2469 113 28 35 chr15 5951783 5952150 -79743604 - L1PA15 LINE L1 -14 6151 5786 2241 120 0 7 chr15 5952150 5952459 -79743295 - AluSx SINE Alu -5 307 1 2469 113 28 35 chr15 5952459 5952490 -79743264 - L1PA15 LINE L1 -379 5786 5756 1201 244 13 0 chr15 5952492 5952799 -79742955 + L1P LINE L1 2562 2872 -3274 5864 214 6 9 chr15 5952982 5954284 -79741470 - L1 LINE L1 -1983 4879 3582 7871 37 2 0 chr15 5954284 5955234 -79740520 - L1PA5 LINE L1 -973 5173 4222 7495 38 7 0 chr15 5955234 5956214 -79739540 + L1PA5 LINE L1 5169 6154 0 4806 139 51 38 chr15 5956228 5956698 -79739056 - L1PBa LINE L1 -3267 3595 3133 3192 75 49 5 chr15 5956698 5957082 -79738672 + MLT2A1 LTR ERVL 1 407 -37 221 0 35 0 chr15 5957082 5957111 -79738643 + (TA)n Simple_repeat Simple_repeat 2 31 0 3192 75 49 5 chr15 5957111 5957151 -79738603 + MLT2A1 LTR ERVL 407 444 0 4806 139 51 38 chr15 5957151 5958137 -79737617 - L1PBa LINE L1 -3729 3133 2132 286 172 65 32 chr15 5958243 5958336 -79737418 - L1ME4a LINE L1 -1 6120 6025 231 36 0 0 chr15 5958367 5958395 -79737359 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3977 66 15 11 chr15 5958395 5958925 -79736829 - LTR6B LTR ERV1 -26 532 1 4151 167 79 4 chr15 5958925 5959854 -79735900 - L1PBa LINE L1 -4728 2135 990 * 6004 147 11 11 chr15 5959849 5961124 -79734630 + L1PB1 LINE L1 4511 5793 -358 489 17 0 0 chr15 5961124 5961182 -79734572 + (TA)n Simple_repeat Simple_repeat 2 59 0 6004 147 11 11 chr15 5961182 5961541 -79734213 + L1PB1 LINE L1 5793 6150 -1 2411 88 0 0 chr15 5962722 5963016 -79732738 - AluSg SINE Alu -15 295 2 239 241 0 0 chr15 5963359 5963417 -79732337 + L1MB4 LINE L1 5688 5745 -2063 3796 90 43 2 chr15 5963519 5964051 -79731703 + MER41A LTR ERV1 1 554 0 4412 127 97 35 chr15 5965508 5966829 -79728925 - pTR5 LTR ERV1 0 2438 743 1947 144 6 41 chr15 5969510 5969568 -79726186 + L1MB4 LINE L1 5852 5911 -269 2257 91 37 0 chr15 5969568 5969866 -79725888 + AluSg SINE Alu 2 310 0 1947 144 6 41 chr15 5969866 5970148 -79725606 + L1MB4 LINE L1 5911 6180 0 26 0 0 0 chr15 5970477 5970503 -79725251 + AT_rich Low_complexity Low_complexity 1 26 0 987 315 120 42 chr15 5970891 5971859 -79723895 + L2 LINE L2 1705 2747 -567 900 333 53 5 chr15 5972077 5972542 -79723212 - L2 LINE L2 -189 3083 2590 367 279 83 59 chr15 5972774 5972978 -79722776 + L2 LINE L2 2287 2495 -819 2251 107 3 3 chr15 5973397 5973707 -79722047 - AluSx SINE Alu -2 310 1 1707 122 52 38 chr15 5974014 5974181 -79721573 - AluJo SINE Alu -21 291 117 234 0 0 0 chr15 5974181 5974207 -79721547 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 122 52 38 chr15 5974207 5974326 -79721428 - AluJo SINE Alu -195 117 1 3220 233 40 55 chr15 5976957 5977200 -79718554 + L1MB8 LINE L1 2839 3084 -3062 2259 109 0 0 chr15 5977200 5977504 -79718250 + AluSg1 SINE Alu 1 304 -5 3220 233 40 55 chr15 5977504 5977880 -79717874 + L1MB8 LINE L1 3084 3464 -2682 1920 154 3 22 chr15 5977880 5978191 -79717563 + AluJo SINE Alu 1 305 -7 3220 233 40 55 chr15 5978191 5978681 -79717073 + L1MB8 LINE L1 3464 3932 -2214 1151 215 87 8 chr15 5978690 5979057 -79716697 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 5979054 5979325 -79716429 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 5979325 5979371 -79716383 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 5979371 5979855 -79715899 + L1MB8 LINE L1 5643 6152 -26 2167 116 0 13 chr15 5979867 5980170 -79715584 + AluY SINE Alu 1 299 -12 232 115 77 0 chr15 5980170 5980222 -79715532 - MER44D DNA MER2_type -123 582 527 * 3971 123 15 2 chr15 5980218 5980874 -79714880 + MER72 LTR ERV1 9 722 0 547 134 229 0 chr15 5980874 5981003 -79714751 - MER44D DNA MER2_type -167 438 10 4184 45 16 10 chr15 5981501 5981988 -79713766 - LTR2B LTR ERV1 0 490 1 26 50 0 0 chr15 5983855 5983895 -79711859 + GC_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr15 5984955 5984992 -79710762 + AT_rich Low_complexity Low_complexity 1 37 0 325 314 38 0 chr15 5985434 5985539 -79710215 + MIR SINE MIR 35 143 -119 362 274 89 45 chr15 5985799 5985978 -79709776 + MIR SINE MIR 9 195 -67 411 264 139 79 chr15 5986696 5987246 -79708508 - L1ME2 LINE L1 -235 5929 5306 327 262 131 45 chr15 5987392 5987613 -79708141 - L1ME2 LINE L1 -1039 5107 4868 2315 104 0 0 chr15 5987707 5988006 -79707748 - AluSq SINE Alu -14 299 1 304 239 68 118 chr15 5988032 5988371 -79707383 - L1ME2 LINE L1 -1956 4190 3869 260 207 0 17 chr15 5988575 5988633 -79707121 - L1MC4 LINE L1 -2 8040 7984 1477 211 61 8 chr15 5988646 5989006 -79706748 - L1MC4 LINE L1 -399 7643 7265 1460 227 87 48 chr15 5989003 5989195 -79706559 - L1MC4a LINE L1 -830 6978 6795 * 2397 66 13 3 chr15 5989195 5989497 -79706257 - AluY SINE Alu -2 309 5 1460 227 87 48 chr15 5989497 5989829 -79705925 - L1MC4a LINE L1 -1013 6795 6439 237 271 171 11 chr15 5990051 5990320 -79705434 - L1ME2 LINE L1 -2499 3647 3336 4583 152 66 15 chr15 5990344 5991146 -79704608 - MER21A LTR ERV1 -2 929 87 1892 114 4 0 chr15 5991247 5991510 -79704244 + AluSx SINE Alu 47 310 -2 440 286 132 5 chr15 5992024 5992213 -79703541 + LTR50 LTR ERVL 1 213 -582 1929 284 77 24 chr15 5992341 5993323 -79702431 + L1M4 LINE L1 3331 4364 -1782 487 289 61 56 chr15 5993330 5993695 -79702059 + MLT1H1 LTR MaLR 1 377 -178 1019 266 61 66 chr15 5993695 5994254 -79701500 + LTR38 LTR ERV1 1 556 0 487 289 61 56 chr15 5994254 5994434 -79701320 + MLT1H1 LTR MaLR 377 555 0 1153 305 74 6 chr15 5994479 5995129 -79700625 + L1M4 LINE L1 4415 5113 -1033 258 329 0 0 chr15 5995209 5995285 -79700469 + Tigger3(Golem) DNA MER2_type 1 76 -2953 432 199 175 30 chr15 5995286 5995452 -79700302 + L2 LINE L2 2874 3063 -250 1378 164 72 34 chr15 5995473 5995736 -79700018 + Tigger3(Golem) DNA MER2_type 2756 3028 -1 222 171 0 0 chr15 5995737 5995778 -79699976 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1869 152 10 7 chr15 5995851 5996148 -79699606 + AluJb SINE Alu 1 298 -14 1723 161 65 6 chr15 5996149 5996472 -79699282 + L1PA16 LINE L1 5820 6161 -5 1292 246 32 61 chr15 5996982 5997160 -79698594 - L1MC4a LINE L1 -1856 5952 5770 2214 88 3 0 chr15 5997160 5997490 -79698264 - AluSp SINE Alu 0 331 1 1292 246 32 61 chr15 5997490 5997752 -79698002 - L1MC4a LINE L1 -2038 5770 5523 2389 84 0 10 chr15 5998048 5998358 -79697396 + AluSg SINE Alu 2 308 -2 229 82 20 61 chr15 5998620 5998669 -79697085 - L1MB3 LINE L1 0 6183 6137 2344 152 2 25 chr15 5998677 5999079 -79696675 - L1MB3 LINE L1 0 6183 5791 238 254 34 0 chr15 5999120 5999179 -79696575 + L1M4 LINE L1 73 133 -6409 772 256 13 34 chr15 5999211 5999445 -79696309 + L1M4 LINE L1 829 1057 -5485 1770 147 24 53 chr15 5999472 5999813 -79695941 + MER67A LTR ERV1 86 416 -127 782 150 0 0 chr15 5999815 5999928 -79695826 + AluJb SINE Alu 1 113 -199 204 40 0 0 chr15 5999929 5999954 -79695800 + (TA)n Simple_repeat Simple_repeat 1 25 0 814 181 0 0 chr15 5999993 6000131 -79695623 + MER67A LTR ERV1 406 543 0 1253 214 47 126 chr15 6000131 6000701 -79695053 + L1M4 LINE L1 3907 4431 -2213 378 265 123 24 chr15 6000705 6000916 -79694838 + L1MC5 LINE L1 7701 7932 -29 1394 175 8 16 chr15 6001261 6001513 -79694241 + AluJo SINE Alu 39 288 -24 515 257 7 29 chr15 6001528 6001664 -79694090 + FLAM_A SINE Alu 1 133 0 594 241 123 44 chr15 6001675 6002218 -79693536 + L1ME3A LINE L1 2677 3262 -2884 628 280 88 18 chr15 6002474 6002803 -79692951 + L1ME3A LINE L1 5614 5965 -199 231 274 0 53 chr15 6002938 6003033 -79692721 + L1ME3A LINE L1 6081 6170 0 376 331 20 0 chr15 6003113 6003264 -79692490 + L1ME LINE L1 5479 5632 -538 287 283 18 26 chr15 6003349 6003462 -79692292 - MLT1H LTR MaLR -311 238 127 2337 102 0 0 chr15 6003824 6004118 -79691636 - AluSg SINE Alu -15 295 2 1991 170 50 31 chr15 6004143 6004685 -79691069 + MLT2A2 LTR ERVL 1 554 0 719 181 0 0 chr15 6004685 6004801 -79690953 + Tigger7 DNA MER2_type 2371 2486 -1 647 289 41 18 chr15 6004816 6005034 -79690720 - MIR SINE MIR -32 230 8 197 77 0 0 chr15 6005202 6005228 -79690526 + L2 LINE L2 3207 3232 -40 2020 210 109 16 chr15 6005309 6005805 -79689949 - MER34 LTR ERV1 0 542 1 533 281 141 19 chr15 6007156 6007426 -79688328 + MLT1K LTR MaLR 282 584 -4 2229 110 7 0 chr15 6007681 6007980 -79687774 + AluSx SINE Alu 1 301 -11 499 140 11 43 chr15 6008056 6008149 -79687605 - MER1B DNA MER1_type 0 339 250 * 1228 133 16 0 chr15 6008146 6008334 -79687420 - MER1B DNA MER1_type -106 191 1 303 306 83 0 chr15 6008569 6008677 -79687077 + HAL1b LINE L1 83 199 -1149 326 299 0 0 chr15 6009332 6009429 -79686325 - L1M4 LINE L1 -1258 4888 4792 1013 227 45 39 chr15 6009429 6009759 -79685995 - MLT1B LTR MaLR 0 390 59 1181 164 82 39 chr15 6010112 6010344 -79685410 + Tigger3(Golem) DNA MER2_type 2786 3027 -2 222 171 0 0 chr15 6010345 6010386 -79685368 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1935 151 10 6 chr15 6010459 6010770 -79684984 + AluJb SINE Alu 1 312 0 1524 234 75 26 chr15 6010798 6011102 -79684652 + L1ME3 LINE L1 5346 5685 -477 2244 102 0 0 chr15 6011102 6011385 -79684369 + AluSx SINE Alu 6 288 -24 1524 234 75 26 chr15 6011385 6011571 -79684183 + L1ME3 LINE L1 5685 5860 -302 999 271 106 31 chr15 6011638 6012189 -79683565 + L2 LINE L2 2718 3310 -3 241 225 69 106 chr15 6012293 6012453 -79683301 - HAL1 LINE L1 -1814 693 540 521 286 77 46 chr15 6012497 6012822 -79682932 + MLT1I LTR MaLR 68 402 -7 471 333 48 33 chr15 6012896 6013293 -79682461 - HAL1 LINE L1 -2057 450 48 294 179 0 0 chr15 6013790 6013846 -79681908 + CT-rich Low_complexity Low_complexity 3 58 0 264 59 0 0 chr15 6013871 6013905 -79681849 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2190 123 10 0 chr15 6013905 6014213 -79681541 - AluSq SINE Alu -1 312 2 360 235 0 0 chr15 6014724 6014792 -79680962 - MLT1K LTR MaLR -15 573 506 2389 44 14 30 chr15 6014792 6015089 -79680665 - AluY SINE Alu -19 292 1 2248 196 97 6 chr15 6016983 6017487 -79678267 - MER44D DNA MER2_type 0 605 1 1172 171 96 32 chr15 6017509 6017760 -79677994 + MLT2D LTR ERVL 146 412 -2 443 215 114 7 chr15 6017764 6017913 -79677841 - L2 LINE L2 -697 2617 2453 456 112 2 17 chr15 6018232 6018305 -79677449 - MLT1C LTR MaLR 0 467 406 437 241 0 11 chr15 6018399 6018486 -79677268 + MER58 DNA MER1_type 5 90 -125 385 285 10 57 chr15 6018550 6018743 -79677011 + L1MEc LINE L1 638 821 -5575 259 267 70 64 chr15 6018821 6018993 -79676761 + L1MC5 LINE L1 6876 7048 -913 989 232 89 36 chr15 6019012 6019404 -79676350 + L1MC5 LINE L1 7112 7524 -437 2105 265 85 21 chr15 6019484 6020506 -79675248 + L1M4 LINE L1 2670 3756 -2390 286 250 40 0 chr15 6020759 6020835 -79674919 - MLT1B LTR MaLR 0 530 452 548 212 147 41 chr15 6021083 6021328 -79674426 - MLT1B LTR MaLR -118 272 2 924 218 28 40 chr15 6021349 6021514 -79674240 - L1M4 LINE L1 -1373 4773 4611 2426 75 0 0 chr15 6021514 6021806 -79673948 - AluSc SINE Alu -17 292 1 924 218 28 40 chr15 6021806 6021892 -79673862 - L1M4 LINE L1 -1535 4611 4525 789 283 78 44 chr15 6023489 6023899 -79671855 + MLT1L LTR MaLR 184 607 -8 2229 127 51 25 chr15 6024243 6024598 -79671156 + THE1B LTR MaLR 1 364 0 452 169 0 0 chr15 6025488 6025559 -79670195 - AluJ/FRAM SINE Alu -10 302 232 1842 124 0 11 chr15 6025583 6025849 -79669905 - AluSq SINE Alu -50 263 1 1355 212 49 61 chr15 6026351 6026742 -79669012 + MLT1B LTR MaLR 1 386 -4 1536 116 19 0 chr15 6026976 6027191 -79668563 + AluSg/x SINE Alu 83 301 -11 923 192 72 5 chr15 6027507 6027715 -79668039 + MER34 LTR ERV1 1 222 -320 1096 171 35 0 chr15 6027777 6027976 -79667778 + MER34 LTR ERV1 337 542 0 2125 117 0 32 chr15 6028297 6028605 -79667149 + AluSx SINE Alu 1 298 -14 2027 132 0 17 chr15 6030209 6030505 -79665249 + AluSx SINE Alu 1 291 -21 702 246 116 78 chr15 6030665 6031188 -79664566 + L1M4 LINE L1 3796 4297 -1849 14937 125 46 4 chr15 6031188 6033509 -79662245 + Tigger1 DNA MER2_type 2 2418 0 702 246 116 78 chr15 6033509 6033570 -79662184 + L1M4 LINE L1 4297 4354 -1792 2205 115 3 0 chr15 6033570 6033866 -79661888 + AluSx SINE Alu 1 297 -15 702 246 116 78 chr15 6033866 6034583 -79661171 + L1M4 LINE L1 4354 5214 -932 23 68 0 0 chr15 6034906 6034950 -79660804 + AT_rich Low_complexity Low_complexity 1 44 0 564 226 56 78 chr15 6035212 6035518 -79660236 + L1MC5 LINE L1 7610 7908 -53 875 258 113 19 chr15 6035848 6036370 -79659384 + L2 LINE L2 2744 3313 0 1671 287 123 21 chr15 6036494 6037293 -79658461 - L2 LINE L2 -543 2771 1892 500 117 0 0 chr15 6037860 6037937 -79657817 - AluJ/FRAM SINE Alu -4 308 232 1916 105 8 4 chr15 6037961 6038219 -79657535 - AluSq SINE Alu -50 263 5 1718 158 54 3 chr15 6038223 6038558 -79657196 - L1MB3 LINE L1 -40 6143 5792 933 181 0 18 chr15 6039464 6039630 -79656124 + Tigger1 DNA MER2_type 1 163 -2255 * 1100 167 0 77 chr15 6039611 6039659 -79656095 + Tigger1 DNA MER2_type 2202 2252 -166 2577 62 0 0 chr15 6039659 6039964 -79655790 - AluY SINE Alu -6 305 1 1100 167 0 77 chr15 6039964 6040149 -79655605 + Tigger1 DNA MER2_type 2252 2417 -1 1163 265 77 20 chr15 6040915 6041380 -79654374 + L1MC3 LINE L1 1 839 -5583 9450 166 104 77 chr15 6041398 6042712 -79653042 + L1MC3 LINE L1 877 2155 -6425 2272 101 0 7 chr15 6042712 6043018 -79652736 + AluSg SINE Alu 1 304 -6 9450 166 104 77 chr15 6043018 6043114 -79652640 + L1MC3 LINE L1 2155 2247 -6333 1664 80 9 0 chr15 6043114 6043338 -79652416 + L1PA10 LINE L1 5939 6164 -4 9450 166 104 77 chr15 6043338 6043492 -79652262 + L1MC3 LINE L1 2247 2395 -6185 1480 166 50 0 chr15 6043492 6043775 -79651979 - L1MA8 LINE L1 -4 6287 5991 9450 166 104 77 chr15 6043775 6043828 -79651926 + L1MC3 LINE L1 2395 2445 -6135 2637 161 11 25 chr15 6043828 6044299 -79651455 + MER4C LTR ERV1 1 464 -1 9450 166 104 77 chr15 6044299 6044415 -79651339 + L1MC3 LINE L1 2445 2556 -6024 3570 181 106 16 chr15 6044415 6045206 -79650548 + MER21B LTR ERV1 1 862 -1 9450 166 104 77 chr15 6045206 6045451 -79650303 + L1MC3 LINE L1 2556 2793 -5787 1366 201 73 4 chr15 6045451 6045725 -79650029 - AluJo SINE Alu -19 293 1 9450 166 104 77 chr15 6045725 6048651 -79647103 + L1MC3 LINE L1 2793 5640 -2940 2305 82 0 20 chr15 6048651 6048956 -79646798 + AluY SINE Alu 1 299 -12 9450 166 104 77 chr15 6048956 6050240 -79645514 + L1MC3 LINE L1 5640 6888 -1692 1123 179 159 14 chr15 6050240 6050426 -79645328 - MER44D DNA MER2_type -1882 609 451 2455 70 0 3 chr15 6050426 6050724 -79645030 + AluY SINE Alu 1 297 -14 1123 179 159 14 chr15 6050724 6050833 -79644921 - MER44D DNA MER2_type -2040 451 1 9450 166 104 77 chr15 6050833 6051252 -79644502 + L1MC3 LINE L1 6888 7294 -1286 397 239 9 44 chr15 6051252 6051365 -79644389 + MLT1F1 LTR MaLR 25 133 -434 9450 166 104 77 chr15 6051365 6051502 -79644252 + L1MC3 LINE L1 7294 7426 -1154 2097 104 0 42 chr15 6051502 6051810 -79643944 + AluSc SINE Alu 1 295 -14 9450 166 104 77 chr15 6051810 6052247 -79643507 + L1MC3 LINE L1 7426 8580 0 2339 90 3 0 chr15 6054023 6054324 -79641430 + AluSp SINE Alu 1 302 -11 2338 177 20 22 chr15 6055041 6055499 -79640255 + MLT1C LTR MaLR 1 457 -10 489 241 111 128 chr15 6055999 6056560 -79639194 + MLT1G LTR MaLR 40 590 0 2541 62 0 3 chr15 6057205 6057509 -79638245 + AluY SINE Alu 1 303 -8 1903 168 3 0 chr15 6057659 6057957 -79637797 - AluJb SINE Alu -13 299 1 551 240 120 5 chr15 6059044 6059244 -79636510 - MIR SINE MIR -19 243 21 320 310 26 9 chr15 6059233 6059346 -79636408 + MIR SINE MIR 46 160 -102 * 1110 71 0 0 chr15 6059662 6059802 -79635952 + AluSg/x SINE Alu 173 312 0 201 325 44 26 chr15 6062485 6062599 -79633155 - MIR3 SINE MIR -87 121 6 288 239 11 34 chr15 6062603 6062691 -79633063 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 679 312 98 21 chr15 6063757 6064187 -79631567 - L1MC/D LINE L1 -2069 5739 5277 21 0 0 0 chr15 6064266 6064287 -79631467 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 178 48 chr15 6064346 6064525 -79631229 + L1MC4a LINE L1 5795 5949 -1859 2067 153 43 85 chr15 6064525 6065008 -79630746 + MLT2C2 LTR ERVL 1 463 -1 309 258 178 48 chr15 6065008 6065165 -79630589 + L1MC4a LINE L1 5949 6175 -1633 351 96 0 0 chr15 6066263 6066315 -79629439 + (CA)n Simple_repeat Simple_repeat 2 53 0 566 313 82 0 chr15 6067242 6067450 -79628304 - MIR SINE MIR -20 242 18 1354 205 85 3 chr15 6068510 6068670 -79627084 - AluJo SINE Alu -6 306 160 180 0 0 0 chr15 6068670 6068690 -79627064 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1354 205 85 3 chr15 6068690 6068812 -79626942 - AluJo SINE Alu -152 160 1 289 278 22 0 chr15 6069492 6069582 -79626172 - L2 LINE L2 0 3313 3222 1843 104 4 19 chr15 6070995 6071264 -79624490 + AluSx SINE Alu 39 303 -9 204 40 0 0 chr15 6071267 6071292 -79624462 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 464 310 154 16 chr15 6071443 6071814 -79623940 - L1M4 LINE L1 -2579 3567 3146 2169 107 10 0 chr15 6072089 6072379 -79623375 + AluSx SINE Alu 5 297 -15 1693 156 39 67 chr15 6072438 6072796 -79622958 - MER7A DNA MER2_type 0 346 1 260 224 0 141 chr15 6072992 6073063 -79622691 - MIR SINE MIR 0 262 183 1561 148 50 44 chr15 6073063 6073361 -79622393 - AluJo SINE Alu -8 304 5 1814 177 0 3 chr15 6073367 6073661 -79622093 - AluJo SINE Alu -19 293 1 260 224 0 141 chr15 6073661 6073738 -79622016 - MIR SINE MIR -84 178 129 32 26 0 0 chr15 6074565 6074604 -79621150 + AT_rich Low_complexity Low_complexity 1 39 0 240 235 10 49 chr15 6074844 6074860 -79620894 + (TATG)n Simple_repeat Simple_repeat 3 18 -82 198 0 0 0 chr15 6074860 6074882 -79620872 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 240 235 10 49 chr15 6074882 6074967 -79620787 + (TATG)n Simple_repeat Simple_repeat 18 100 0 197 329 24 0 chr15 6074972 6075057 -79620697 - MIR SINE MIR -8 254 168 200 308 11 11 chr15 6075115 6075206 -79620548 - MIR SINE MIR -74 188 98 335 272 68 0 chr15 6075207 6075310 -79620444 - MIR SINE MIR -90 172 63 2580 172 42 22 chr15 6075360 6075865 -79619889 + MLT2B2 LTR ERVL 1 515 0 909 263 211 12 chr15 6076309 6076735 -79619019 + LTR33 LTR ERVL 3 513 -8 335 324 0 0 chr15 6077455 6077560 -79618194 + L1ME2 LINE L1 6038 6142 -22 309 215 15 0 chr15 6077663 6077728 -79618026 + L1MC4 LINE L1 6638 6703 -1339 2613 62 3 0 chr15 6077729 6078038 -79617716 - AluY SINE Alu -1 310 1 710 321 105 24 chr15 6078076 6078970 -79616784 + L1ME3A LINE L1 4401 5367 -779 2478 44 13 32 chr15 6078989 6079305 -79616449 + AluY SINE Alu 1 310 -1 646 310 39 18 chr15 6079433 6079814 -79615940 + L1ME3A LINE L1 5557 5951 -213 28 0 0 0 chr15 6080026 6080054 -79615700 + AT_rich Low_complexity Low_complexity 1 28 0 2113 114 0 23 chr15 6080845 6081144 -79614610 - AluSg SINE Alu -18 292 1 2235 124 3 3 chr15 6083801 6084108 -79611646 - AluSx SINE Alu -5 307 1 189 276 216 17 chr15 6085703 6085884 -79609870 + MIR SINE MIR 19 235 -27 27 0 0 0 chr15 6086154 6086181 -79609573 + AT_rich Low_complexity Low_complexity 1 27 0 3549 123 26 9 chr15 6086181 6086680 -79609074 - L1MC1 LINE L1 0 6333 5821 2073 129 3 0 chr15 6086680 6086967 -79608787 - AluSx SINE Alu -4 308 21 3549 123 26 9 chr15 6086967 6087045 -79608709 - L1MC1 LINE L1 -512 5821 5746 2175 118 0 3 chr15 6087522 6087810 -79607944 - AluSx SINE Alu -25 287 1 1108 221 79 25 chr15 6087856 6088173 -79607581 - L1ME1 LINE L1 -5 6161 5828 4337 238 43 44 chr15 6088418 6089477 -79606277 + L1M4 LINE L1 1 1060 -5586 1984 143 3 20 chr15 6089477 6089778 -79605976 + AluSx SINE Alu 1 296 -16 4337 238 43 44 chr15 6089778 6090033 -79605721 + L1M4 LINE L1 1060 1314 -5332 1827 161 0 30 chr15 6090033 6090337 -79605417 + AluJo SINE Alu 1 295 -17 4337 238 43 44 chr15 6090337 6091037 -79604717 + L1M4 LINE L1 1314 2018 -4628 1458 168 183 40 chr15 6091142 6091542 -79604212 + MSTB2 LTR MaLR 1 457 0 987 206 78 5 chr15 6091542 6091896 -79603858 + L1M4 LINE L1 2588 2970 -3674 390 310 110 0 chr15 6092039 6092194 -79603560 - MER5B DNA MER1_type -4 174 3 315 260 48 19 chr15 6092202 6092306 -79603448 + MIR SINE MIR 13 119 -143 272 26 0 26 chr15 6092466 6092504 -79603250 + (CAT)n Simple_repeat Simple_repeat 3 39 0 396 0 0 0 chr15 6092787 6092831 -79602923 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 320 100 7 chr15 6093110 6093349 -79602405 + L1ME4a LINE L1 904 1172 -4947 255 103 0 0 chr15 6093349 6093388 -79602366 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 241 320 100 7 chr15 6093388 6093417 -79602337 + L1ME4a LINE L1 1172 1197 -4922 2659 148 11 25 chr15 6093544 6093983 -79601771 + Tigger2a DNA MER2_type 1 433 -1 237 340 10 0 chr15 6094151 6094251 -79601503 + L1ME4a LINE L1 4721 4821 -1308 311 303 99 36 chr15 6094310 6094531 -79601223 + L1ME4a LINE L1 4889 5123 -1006 215 30 0 30 chr15 6094593 6094626 -79601128 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 275 269 0 25 chr15 6094994 6095113 -79600641 + T-rich Low_complexity Low_complexity 5 120 0 511 254 78 54 chr15 6095236 6095571 -79600183 + L1ME4a LINE L1 5762 6104 0 1174 182 43 38 chr15 6095653 6096000 -79599754 - L1MEc LINE L1 -4176 2220 1872 620 246 77 49 chr15 6095984 6096374 -79599380 - L1MEc LINE L1 -4993 1403 1003 * 2124 273 49 5 chr15 6096415 6097002 -79598752 - L1MEc LINE L1 -5578 818 206 942 282 59 17 chr15 6097010 6097297 -79598457 + ERVL LTR ERVL 1341 1639 -4125 261 0 0 0 chr15 6097981 6098010 -79597744 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 306 81 62 chr15 6098732 6098965 -79596789 - L2 LINE L2 -557 2757 2512 2171 110 3 0 chr15 6098965 6099285 -79596469 + AluSg SINE Alu 1 321 0 184 306 81 62 chr15 6099285 6099435 -79596319 - L2 LINE L2 -802 2512 2366 183 263 53 18 chr15 6099495 6099552 -79596202 + MIR3 SINE MIR 10 68 -140 1802 189 39 8 chr15 6099802 6100162 -79595592 + MLT2D LTR ERVL 3 373 -41 225 246 29 0 chr15 6100162 6100231 -79595523 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 224 0 0 chr15 6100233 6100291 -79595463 + MLT2D LTR ERVL 455 512 -8 2259 89 3 7 chr15 6101357 6101648 -79594106 + AluSg1 SINE Alu 14 303 -6 1156 101 0 0 chr15 6102295 6102444 -79593310 + AluSg/x SINE Alu 149 297 -15 303 177 302 10 chr15 6105666 6105762 -79589992 + MLT1E1 LTR MaLR 2 125 -529 3985 166 26 35 chr15 6105851 6106633 -79589121 + LTR1 LTR ERV1 11 785 0 574 225 0 0 chr15 6106633 6106744 -79589010 + MLT1E1 LTR MaLR 537 647 -7 828 201 65 15 chr15 6106747 6106946 -79588808 + MLT1A2 LTR MaLR 1 209 -165 4494 29 0 0 chr15 6106966 6107487 -79588267 - L1PA5 LINE L1 -1795 4351 3831 8650 38 7 2 chr15 6107487 6109292 -79586462 + L1PA5 LINE L1 4342 6151 -3 761 200 33 7 chr15 6109338 6109488 -79586266 + MLT1A2 LTR MaLR 237 390 0 317 185 169 23 chr15 6111840 6111970 -79583784 + Charlie4a DNA MER1_type 251 399 -109 2395 80 0 13 chr15 6111981 6112294 -79583460 - AluY SINE Alu -2 309 1 1098 60 0 8 chr15 6112295 6112428 -79583326 - AluY SINE Alu -179 132 1 447 125 0 0 chr15 6112436 6112500 -79583254 + Charlie4a DNA MER1_type 408 471 -37 583 274 81 62 chr15 6112537 6113224 -79582530 - L1MEd LINE L1 -4682 1628 871 475 290 38 27 chr15 6114144 6114468 -79581286 + L1M4 LINE L1 4318 4657 -1489 3456 162 89 60 chr15 6114719 6115049 -79580705 - L1MB3 LINE L1 -1 6182 5863 2392 72 10 7 chr15 6115049 6115353 -79580401 - AluY SINE Alu -6 305 1 3456 162 89 60 chr15 6115353 6115682 -79580072 - L1MB3 LINE L1 -320 5863 5545 1964 142 6 19 chr15 6115682 6115993 -79579761 - AluJb SINE Alu 0 312 6 3456 162 89 60 chr15 6115993 6116131 -79579623 - L1MB3 LINE L1 -638 5545 5413 2510 139 39 24 chr15 6116131 6116599 -79579155 - L1MA9 LINE L1 -3 6309 5835 3456 162 89 60 chr15 6116599 6116998 -79578756 - L1MB3 LINE L1 -770 5413 4931 21 57 0 0 chr15 6116999 6117034 -79578720 + AT_rich Low_complexity Low_complexity 1 35 0 2191 112 3 16 chr15 6117270 6117574 -79578180 + AluSx SINE Alu 1 300 -12 2170 113 0 0 chr15 6118607 6118915 -79576839 + AluSx SINE Alu 1 308 0 237 303 37 41 chr15 6118919 6118932 -79576822 + L1MC4a LINE L1 4123 4135 -2011 1947 221 94 29 chr15 6118932 6119546 -79576208 + MLT1E1 LTR MaLR 1 654 0 237 303 37 41 chr15 6119546 6119750 -79576004 + L1MC4a LINE L1 4135 4339 -1807 2512 131 52 24 chr15 6119751 6120076 -79575678 - Tigger2a DNA MER2_type -2275 433 92 195 42 0 0 chr15 6120076 6120100 -79575654 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2512 131 52 24 chr15 6120100 6120193 -79575561 - Tigger2a DNA MER2_type -2616 92 3 403 299 125 5 chr15 6120196 6120380 -79575374 - MIR SINE MIR -7 255 50 253 294 52 0 chr15 6120660 6120813 -79574941 + L1MC4a LINE L1 4883 5043 -1103 330 316 73 38 chr15 6121456 6121884 -79573870 + L1MC4a LINE L1 5260 5706 -415 285 270 98 23 chr15 6121905 6122079 -79573675 + L1MC4a LINE L1 5751 5937 -1871 219 139 0 0 chr15 6122417 6122453 -79573301 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 81 0 0 chr15 6122458 6122495 -79573259 + (TG)n Simple_repeat Simple_repeat 2 38 0 1783 159 22 0 chr15 6122501 6122777 -79572977 - AluJb SINE Alu -30 282 1 287 292 30 77 chr15 6125177 6125274 -79570480 + L2 LINE L2 2613 2700 -614 2468 90 0 0 chr15 6125274 6125575 -79570179 + AluSx SINE Alu 1 301 -11 287 292 30 77 chr15 6125575 6125645 -79570109 + L2 LINE L2 2700 2772 -542 1950 131 0 24 chr15 6126452 6126743 -79569011 + AluSx SINE Alu 21 304 -8 23 33 0 0 chr15 6126743 6126773 -79568981 + AT_rich Low_complexity Low_complexity 1 30 0 477 257 129 83 chr15 6126834 6127201 -79568553 - HAL1 LINE L1 -115 2392 1999 1978 194 6 0 chr15 6127201 6127547 -79568207 - MER7A DNA MER2_type 0 346 1 477 257 129 83 chr15 6127547 6127627 -79568127 - HAL1 LINE L1 -508 1999 1924 437 228 71 16 chr15 6127628 6127812 -79567942 + HAL1 LINE L1 1716 1909 -598 1805 106 14 48 chr15 6127855 6128147 -79567607 - AluSx SINE Alu -30 282 1 318 319 200 0 chr15 6128153 6128338 -79567416 - HAL1 LINE L1 -788 1719 1498 296 254 101 63 chr15 6128341 6128530 -79567224 - L2 LINE L2 -10 3303 3108 248 255 134 34 chr15 6128703 6128942 -79566812 - HAL1 LINE L1 -1171 1336 1074 343 280 99 55 chr15 6128945 6129262 -79566492 - L1MC4 LINE L1 -27 8015 7556 2125 89 64 0 chr15 6129511 6129793 -79565961 - AluSq SINE Alu -13 300 1 806 159 8 0 chr15 6129796 6129928 -79565826 - FLAM_A SINE Alu 0 133 1 1066 282 94 54 chr15 6130849 6130957 -79564797 - L1ME3A LINE L1 -297 5873 5771 2386 78 3 0 chr15 6130957 6131250 -79564504 - AluSg SINE Alu -16 294 1 1066 282 94 54 chr15 6131250 6131972 -79563782 - L1ME3A LINE L1 -399 5771 4996 855 251 119 52 chr15 6131982 6132687 -79563067 - L1ME3A LINE L1 -1197 4949 4031 704 284 163 34 chr15 6132744 6133728 -79562026 - L1ME3A LINE L1 -2734 3412 2302 26323 31 6 0 chr15 6133930 6137844 -79557910 + L1PA4 LINE L1 2252 6175 0 262 280 128 0 chr15 6138496 6138621 -79557133 - MER117 DNA MER1_type 0 197 57 315 268 85 20 chr15 6139360 6139628 -79556126 + L1M3d LINE L1 909 1187 -4704 396 251 144 46 chr15 6139820 6140159 -79555595 + L1MEc LINE L1 1704 1991 -4549 528 273 16 44 chr15 6140159 6140342 -79555412 + HAL1 LINE L1 138 315 -2192 1998 212 75 21 chr15 6140350 6140869 -79554885 - LTR55 LTR ERV -1 547 1 1042 248 234 18 chr15 6141079 6141745 -79554009 + HAL1 LINE L1 1671 2480 -27 2401 98 0 6 chr15 6142153 6142468 -79553286 + AluSq SINE Alu 1 313 0 2140 70 10 37 chr15 6143674 6143973 -79551781 + AluY SINE Alu 1 291 -20 2835 154 90 47 chr15 6144109 6144666 -79551088 - LTR12 LTR ERV1 -133 581 1 2165 103 3 31 chr15 6145184 6145504 -79550250 - AluY SINE Alu 0 311 1 223 224 21 35 chr15 6146134 6146277 -79549477 + (TTAA)n Simple_repeat Simple_repeat 4 144 0 2148 159 118 25 chr15 6147538 6147978 -79547776 - MLT1D LTR MaLR -2 503 23 2057 122 0 3 chr15 6148388 6148682 -79547072 - AluSx SINE Alu -19 293 1 221 360 0 10 chr15 6149128 6149228 -79546526 - L3 LINE CR1 -633 944 846 588 192 0 34 chr15 6149228 6149405 -79546349 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1554 205 3 0 chr15 6149405 6149688 -79546066 - AluJb SINE Alu -28 284 1 333 283 125 18 chr15 6150370 6150642 -79545112 + L2 LINE L2 2986 3286 -27 1093 111 0 26 chr15 6150666 6150842 -79544912 + AluSg/x SINE Alu 134 305 0 217 265 94 65 chr15 6151237 6151407 -79544347 - MIR SINE MIR -42 220 46 50 0 0 0 chr15 6151604 6151654 -79544100 + AT_rich Low_complexity Low_complexity 1 50 0 302 222 12 0 chr15 6155822 6155903 -79539851 - L1MC4 LINE L1 -1346 6696 6615 347 196 11 76 chr15 6155969 6156061 -79539693 - MER81 DNA DNA -2 112 27 1243 196 0 14 chr15 6158469 6158689 -79537065 + MER101B LTR ERV1 1 217 -353 765 214 22 45 chr15 6159024 6159202 -79536552 - MER82 DNA MER2_type -472 181 8 2362 163 216 161 chr15 6159208 6159452 -79536302 + L1MD3 LINE L1 6659 6888 -1107 444 19 0 0 chr15 6159452 6159505 -79536249 + (CA)n Simple_repeat Simple_repeat 2 54 0 2362 163 216 161 chr15 6159505 6159874 -79535880 + L1MD3 LINE L1 6888 7235 -760 604 230 36 7 chr15 6159874 6160013 -79535741 + MLT1A1 LTR MaLR 6 148 -419 2362 163 216 161 chr15 6160013 6160429 -79535325 + L1MD3 LINE L1 7235 7891 -104 2787 150 27 16 chr15 6161079 6161566 -79534188 + L1MB3 LINE L1 5584 6075 -108 228 299 141 4 chr15 6161968 6162202 -79533552 + L2 LINE L2 2138 2403 -911 589 250 42 32 chr15 6163732 6163979 -79531775 - MER4C LTR ERV1 0 597 325 948 95 7 7 chr15 6164309 6164446 -79531308 + MLT1A1 LTR MaLR 1 137 -228 3785 194 70 36 chr15 6164468 6165292 -79530462 + MER21B LTR ERV1 12 863 0 1229 164 26 17 chr15 6165302 6165533 -79530221 + MLT1A1 LTR MaLR 133 365 0 386 291 94 24 chr15 6165533 6165811 -79529943 + MLT1L LTR MaLR 57 461 -154 1365 206 120 59 chr15 6165881 6166357 -79529397 - MLT1D LTR MaLR 0 505 1 36 23 0 0 chr15 6166403 6166446 -79529308 + AT_rich Low_complexity Low_complexity 1 43 0 1503 114 4 92 chr15 6166721 6166994 -79528760 - AluJb SINE Alu -14 298 50 2097 92 3 46 chr15 6167034 6167339 -79528415 + AluSx SINE Alu 1 292 -20 2541 154 31 1 chr15 6169119 6169762 -79525992 - L1PA13 LINE L1 -626 5539 4874 3772 121 40 8 chr15 6169765 6170370 -79525384 + L1PA13 LINE L1 5540 6163 0 1138 272 175 18 chr15 6172878 6173491 -79522263 - L1ME4a LINE L1 -57 6064 5356 269 289 157 25 chr15 6173733 6173854 -79521900 + MIR SINE MIR 46 182 -80 794 238 121 0 chr15 6173926 6174166 -79521588 + MLT1F1 LTR MaLR 299 567 0 216 100 0 0 chr15 6174168 6174198 -79521556 + MIR SINE MIR 196 225 -37 714 256 102 63 chr15 6174225 6174686 -79521068 + MLT1H LTR MaLR 71 549 0 3782 128 2 6 chr15 6174898 6175427 -79520327 + MER1A DNA MER1_type 1 527 0 2581 171 89 0 chr15 6177229 6177702 -79518052 - MLT2B2 LTR ERVL 0 515 1 1527 171 14 31 chr15 6179218 6179505 -79516249 + AluJo SINE Alu 1 282 -30 2016 103 3 3 chr15 6179604 6179918 -79515836 + AluSx SINE Alu 3 316 0 3483 130 27 30 chr15 6180679 6180729 -79515025 - L1MB3 LINE L1 -3 6180 6131 1848 135 24 0 chr15 6180729 6181026 -79514728 - AluSg SINE Alu -6 304 1 3483 130 27 30 chr15 6181026 6181577 -79514177 - L1MB3 LINE L1 -52 6131 5581 1981 111 0 4 chr15 6181589 6181889 -79513865 + AluSq SINE Alu 10 308 0 322 280 70 14 chr15 6182638 6182781 -79512973 + L1MB8 LINE L1 6027 6177 -1 2942 190 26 3 chr15 6182909 6183489 -79512265 + L1MB3 LINE L1 5591 6183 0 370 306 214 20 chr15 6183713 6183965 -79511789 + L3 LINE CR1 192 492 -1085 253 245 50 86 chr15 6184138 6184277 -79511477 + L3 LINE CR1 743 876 -701 22 35 0 0 chr15 6184990 6185019 -79510735 + AT_rich Low_complexity Low_complexity 1 29 0 355 231 0 0 chr15 6185250 6185315 -79510439 - L2 LINE L2 0 3272 3208 291 288 38 38 chr15 6185512 6185644 -79510110 - L2 LINE L2 -583 2731 2600 2101 114 3 0 chr15 6187582 6187881 -79507873 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr15 6188140 6188172 -79507582 + AT_rich Low_complexity Low_complexity 1 32 0 1784 143 30 50 chr15 6188335 6188436 -79507318 + L1MB3 LINE L1 5824 5925 -258 2201 94 0 7 chr15 6188436 6188753 -79507001 - AluSx SINE Alu 0 312 1 1784 143 30 50 chr15 6188753 6189014 -79506740 + L1MB3 LINE L1 5925 6179 -4 30 0 0 0 chr15 6189015 6189045 -79506709 + AT_rich Low_complexity Low_complexity 1 30 0 239 289 28 42 chr15 6189771 6189913 -79505841 - MER117 DNA MER1_type -38 159 20 27 32 0 32 chr15 6191645 6191664 -79504090 + AT_rich Low_complexity Low_complexity 1 19 -42 487 0 32 0 chr15 6191664 6191727 -79504027 + (CA)n Simple_repeat Simple_repeat 2 66 0 2215 81 0 0 chr15 6191733 6192018 -79503736 - AluSx SINE Alu -27 285 1 27 32 0 32 chr15 6192018 6192054 -79503700 + AT_rich Low_complexity Low_complexity 24 61 0 496 269 85 40 chr15 6192638 6192861 -79502893 - Charlie8 DNA MER1_type -2184 233 1 2031 135 0 6 chr15 6193799 6194110 -79501644 - AluSx SINE Alu -3 309 1 2158 240 64 18 chr15 6196022 6196675 -79499079 + L1ME3A LINE L1 5488 6170 0 910 237 25 29 chr15 6197154 6197247 -79498507 - MER33 DNA MER1_type -2264 321 229 243 0 0 0 chr15 6197247 6197274 -79498480 + (TA)n Simple_repeat Simple_repeat 1 27 0 2450 56 0 10 chr15 6197274 6197580 -79498174 - AluY SINE Alu -8 303 1 910 237 25 29 chr15 6197580 6197703 -79498051 - MER33 DNA MER1_type -2355 230 108 1671 164 40 95 chr15 6197703 6197876 -79497878 + MSTB LTR MaLR 1 182 -244 1818 84 0 0 chr15 6197876 6198113 -79497641 + AluSq SINE Alu 1 237 -76 1671 164 40 95 chr15 6198113 6198166 -79497588 + MSTB LTR MaLR 182 236 -190 2425 44 0 41 chr15 6198166 6198481 -79497273 + AluY SINE Alu 1 302 -9 1671 164 40 95 chr15 6198481 6198704 -79497050 + MSTB LTR MaLR 236 426 0 910 237 25 29 chr15 6198704 6198764 -79496990 - MER33 DNA MER1_type -2477 108 44 306 132 0 0 chr15 6198856 6198909 -79496845 + (TC)n Simple_repeat Simple_repeat 2 54 0 423 56 0 0 chr15 6198909 6198963 -79496791 + (CA)n Simple_repeat Simple_repeat 1 54 0 542 307 77 38 chr15 6199012 6199351 -79496403 + MLT1K LTR MaLR 237 588 0 243 0 0 0 chr15 6199592 6199619 -79496135 + (A)n Simple_repeat Simple_repeat 1 27 0 437 268 150 7 chr15 6200481 6200634 -79495120 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr15 6200871 6200892 -79494862 + AT_rich Low_complexity Low_complexity 1 21 0 6049 168 45 15 chr15 6201108 6201240 -79494514 - L1MC1 LINE L1 -2 6331 6204 2092 121 0 37 chr15 6201240 6201563 -79494191 - AluSq SINE Alu -2 311 1 6049 168 45 15 chr15 6201563 6202884 -79492870 - L1MC1 LINE L1 -129 6204 4829 581 246 82 10 chr15 6202901 6203096 -79492658 - L1MC1 LINE L1 -1353 4793 4585 32 26 0 0 chr15 6203352 6203391 -79492363 + AT_rich Low_complexity Low_complexity 1 39 0 205 261 0 0 chr15 6203798 6203844 -79491910 + (CA)n Simple_repeat Simple_repeat 2 47 0 909 270 92 57 chr15 6204321 6204862 -79490892 + L1MB5 LINE L1 8 567 -5975 3597 130 9 65 chr15 6204888 6205567 -79490187 + L1MA5 LINE L1 5268 5908 -392 2751 134 23 48 chr15 6205613 6205664 -79490090 + L1MA5 LINE L1 5793 5844 -456 2054 118 3 0 chr15 6205664 6205968 -79489786 + AluSx SINE Alu 3 307 -5 2751 134 23 48 chr15 6205968 6206437 -79489317 + L1MA5 LINE L1 5844 6300 0 2793 234 66 66 chr15 6206461 6206948 -79488806 + L1MB5 LINE L1 592 1077 -5595 1908 155 0 0 chr15 6206948 6207245 -79488509 - AluSx SINE Alu -14 298 2 2793 234 66 66 chr15 6207245 6208384 -79487370 + L1MB5 LINE L1 1077 6664 -8 3879 169 113 64 chr15 6209348 6210686 -79485068 - pTR5 LTR ERV1 0 2438 743 197 319 33 22 chr15 6211430 6211521 -79484233 + MIR SINE MIR 95 186 -76 2340 75 0 0 chr15 6211975 6212269 -79483485 + AluSx SINE Alu 1 294 -18 341 182 15 0 chr15 6212387 6212453 -79483301 + AluJ/FRAM SINE Alu 230 296 -6 1969 114 3 7 chr15 6212517 6212806 -79482948 + AluSx SINE Alu 1 288 -24 254 282 157 14 chr15 6212812 6213028 -79482726 + L1P LINE L1 4053 4299 -1847 5201 179 38 41 chr15 6213190 6215198 -79480556 - L1MA9 LINE L1 -1 7730 5719 217 0 61 0 chr15 6215198 6215231 -79480523 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 5201 179 38 41 chr15 6215231 6215763 -79479991 - L1MA9 LINE L1 -2012 5719 5187 1769 184 111 8 chr15 6215763 6216122 -79479632 + MSTD LTR MaLR 1 396 0 5201 179 38 41 chr15 6216122 6216777 -79478977 - L1MA9 LINE L1 -2544 5187 4532 1688 158 79 22 chr15 6216777 6217132 -79478622 + THE1C LTR MaLR 1 375 0 5201 179 38 41 chr15 6217132 6218210 -79477544 - L1MA9 LINE L1 -3199 4532 3323 1512 190 31 3 chr15 6218210 6218499 -79477255 - AluJo SINE Alu -15 297 1 5201 179 38 41 chr15 6218499 6218529 -79477225 - L1MA9 LINE L1 -4408 3323 3294 11199 208 61 18 chr15 6218560 6222432 -79473322 + L1MB7 LINE L1 2120 6167 -17 852 209 95 41 chr15 6222447 6222763 -79472991 + MER69 DNA AcHobo 2138 2470 -56 431 298 121 15 chr15 6222795 6223081 -79472673 + L1ME LINE L1 5429 5638 -528 31566 103 7 12 chr15 6223972 6229366 -79466388 + L1PA7 LINE L1 700 6091 -378 2247 60 3 18 chr15 6229366 6229648 -79466106 + AluY SINE Alu 19 296 -15 31566 103 7 12 chr15 6229648 6230025 -79465729 + L1PA7 LINE L1 6091 6468 -1 2019 122 42 0 chr15 6230153 6230440 -79465314 - AluSx SINE Alu -1 311 13 1077 66 7 0 chr15 6230540 6230676 -79465078 + L1PA7 LINE L1 6017 6153 -1 1698 141 67 20 chr15 6230804 6231101 -79464653 - AluSx SINE Alu -1 311 1 372 246 131 8 chr15 6231286 6231416 -79464338 - MER104 DNA Tc2 -14 166 21 402 258 80 13 chr15 6231607 6231758 -79463996 + MER69A DNA AcHobo 13 173 -4 2006 164 49 27 chr15 6231925 6232291 -79463463 + MLT1A2 LTR MaLR 1 374 0 316 262 115 25 chr15 6233312 6233434 -79462320 - L2 LINE L2 0 3313 3181 3023 141 58 0 chr15 6233546 6234028 -79461726 - L1MB2 LINE L1 -2 6169 5660 988 210 223 3 chr15 6234773 6235020 -79460734 - MLT2B2 LTR ERVL -181 233 1 786 201 187 10 chr15 6235020 6235229 -79460525 + MLT1D LTR MaLR 322 505 0 898 242 41 0 chr15 6235317 6235511 -79460243 + MER3 DNA MER1_type 4 205 -4 818 216 11 28 chr15 6235522 6235703 -79460051 + MER5B DNA MER1_type 1 178 0 245 179 128 51 chr15 6236456 6236534 -79459220 + HAL1b LINE L1 604 687 -661 574 258 109 45 chr15 6236713 6236934 -79458820 - MIR SINE MIR -27 235 1 865 173 24 18 chr15 6237256 6237424 -79458330 - L1MA9 LINE L1 0 6312 6144 1154 184 148 0 chr15 6237430 6237704 -79458050 + AluJo SINE Alu 2 311 0 683 157 0 0 chr15 6237707 6237822 -79457932 - L1MA9 LINE L1 -178 6134 6020 204 40 0 0 chr15 6238610 6238635 -79457119 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 231 36 0 0 chr15 6238634 6238662 -79457092 + (CA)n Simple_repeat Simple_repeat 1 28 0 471 157 0 0 chr15 6238734 6238804 -79456950 - MER8 DNA MER2_type 0 239 170 * 2736 131 18 31 chr15 6238787 6239206 -79456548 + Tigger2 DNA MER2_type 2267 2681 -37 1588 175 133 30 chr15 6239206 6239611 -79456143 + LTR7 LTR ERV1 3 449 -1 2736 131 18 31 chr15 6239611 6239649 -79456105 + Tigger2 DNA MER2_type 2681 2718 0 1683 241 27 31 chr15 6240153 6240479 -79455275 + L1M4 LINE L1 4256 4581 -1565 1143 188 14 36 chr15 6240479 6240702 -79455052 + MER20B DNA MER1_type 2 219 0 1683 241 27 31 chr15 6240702 6240860 -79454894 + L1M4 LINE L1 4581 4738 -1408 1750 222 102 14 chr15 6241358 6241867 -79453887 + L1M4 LINE L1 4747 5300 -846 3136 224 21 34 chr15 6241867 6242644 -79453110 + L1MB7 LINE L1 3 769 -5773 4538 182 70 52 chr15 6242648 6243894 -79451860 + L1MB7 LINE L1 4704 5928 -736 5365 105 68 7 chr15 6243894 6244629 -79451125 - LTR17 LTR ERV1 0 780 1 4538 182 70 52 chr15 6244629 6245328 -79450426 + L1MB7 LINE L1 5928 6614 -50 1743 149 20 40 chr15 6245943 6246245 -79449509 - AluJo SINE Alu -16 296 1 379 316 106 28 chr15 6246331 6246755 -79448999 + L2 LINE L2 1820 2276 -1038 288 292 188 0 chr15 6247488 6247632 -79448122 - L2 LINE L2 0 3272 3102 491 294 0 0 chr15 6248716 6248893 -79446861 + G-rich Low_complexity Low_complexity 1 177 0 1448 198 29 3 chr15 6249036 6249349 -79446405 - MER74A LTR ERVL -222 336 16 764 288 171 16 chr15 6250052 6250503 -79445251 + MER20B DNA MER1_type 213 733 -50 1239 110 48 118 chr15 6251236 6251344 -79444410 - L1MA8 LINE L1 -5 6286 6172 2036 129 0 0 chr15 6251344 6251631 -79444123 - AluSx SINE Alu -25 287 1 1239 110 48 118 chr15 6251631 6251834 -79443920 - L1MA8 LINE L1 -119 6172 6013 285 29 0 0 chr15 6253772 6253806 -79441948 + (A)n Simple_repeat Simple_repeat 1 34 0 794 165 0 0 chr15 6305056 6305177 -79390577 + FLAM_A SINE Alu 1 121 -12 499 314 116 59 chr15 6305269 6305617 -79390137 + L1MC4a LINE L1 4161 4547 -1599 2122 121 7 0 chr15 6305617 6305922 -79389832 + AluSx SINE Alu 1 307 -5 499 314 116 59 chr15 6305922 6306066 -79389688 + L1MC4a LINE L1 4547 4681 -1465 1377 246 81 38 chr15 6306118 6306613 -79389141 + MLT1H1 LTR MaLR 38 553 -2 521 155 16 16 chr15 6306623 6306636 -79389118 + GA-rich Low_complexity Low_complexity 3 15 -116 2230 81 0 7 chr15 6306636 6306932 -79388822 + AluSg SINE Alu 1 294 -16 521 155 16 16 chr15 6306932 6307047 -79388707 + GA-rich Low_complexity Low_complexity 14 131 0 386 281 294 0 chr15 6307108 6307336 -79388418 - L2 LINE L2 -4 3309 3015 347 295 127 27 chr15 6307351 6307720 -79388034 + L1MC4a LINE L1 5518 5923 -1885 23 0 0 0 chr15 6308039 6308062 -79387692 + AT_rich Low_complexity Low_complexity 1 23 0 1684 135 11 18 chr15 6308577 6308858 -79386896 + AluJo SINE Alu 1 279 -33 220 180 24 18 chr15 6308968 6309023 -79386731 - MIR SINE MIR -52 156 98 250 140 20 20 chr15 6310607 6310657 -79385097 - MIR SINE MIR -115 147 98 207 256 0 37 chr15 6311299 6311381 -79384373 + (CAAAC)n Simple_repeat Simple_repeat 5 83 0 545 161 5 38 chr15 6311449 6311635 -79384119 + CT-rich Low_complexity Low_complexity 1 180 0 2085 146 108 28 chr15 6311654 6311736 -79384018 + Tigger2 DNA MER2_type 2298 2372 -346 186 43 0 0 chr15 6311736 6311759 -79383995 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2085 146 108 28 chr15 6311759 6312066 -79383688 + Tigger2 DNA MER2_type 2372 2718 0 347 271 33 49 chr15 6312066 6312188 -79383566 + MIR SINE MIR 134 253 -9 2314 193 52 4 chr15 6312414 6312895 -79382859 - MLT1D LTR MaLR -1 504 1 388 331 238 5 chr15 6312984 6313362 -79382392 - L2 LINE L2 -592 2722 2257 772 243 27 0 chr15 6313850 6313998 -79381756 + MER58A DNA MER1_type 1 152 0 1792 149 17 3 chr15 6313998 6314294 -79381460 + L1M2 LINE L1 5401 5700 -612 201 94 0 0 chr15 6314305 6314337 -79381417 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1981 260 58 73 chr15 6314337 6314397 -79381357 + L1MC4 LINE L1 7090 7149 -893 2221 73 0 3 chr15 6314397 6314683 -79381071 + AluY SINE Alu 1 285 -26 1981 260 58 73 chr15 6314683 6314703 -79381051 + L1MC4 LINE L1 7149 7168 -874 180 0 0 0 chr15 6314703 6314723 -79381031 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1981 260 58 73 chr15 6314723 6315601 -79380153 + L1MC4 LINE L1 7168 8036 -6 456 285 72 101 chr15 6315731 6315772 -79379982 - L1MDb LINE L1 -1029 1738 1697 1733 173 3 3 chr15 6315772 6316078 -79379676 - AluJb SINE Alu -2 310 5 456 285 72 101 chr15 6316078 6316534 -79379220 - L1MDb LINE L1 -1070 1697 1148 1786 132 3 21 chr15 6316544 6316832 -79378922 + AluSx SINE Alu 5 287 -25 222 37 0 0 chr15 6316835 6316862 -79378892 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr15 6316912 6316941 -79378813 + AT_rich Low_complexity Low_complexity 1 29 0 370 260 0 32 chr15 6317945 6318068 -79377686 + L1ME LINE L1 4461 4579 -1567 415 313 74 44 chr15 6318096 6318393 -79377361 + L1ME LINE L1 5357 5662 -459 269 298 67 0 chr15 6318420 6318524 -79377230 + L1ME LINE L1 5703 5813 -357 2392 63 7 0 chr15 6318672 6318975 -79376779 + AluY SINE Alu 1 305 -6 207 0 0 0 chr15 6319142 6319165 -79376589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2030 91 3 21 chr15 6319167 6319454 -79376300 - AluY SINE Alu -29 282 1 2017 120 0 3 chr15 6319456 6319748 -79376006 - AluSq SINE Alu -22 291 1 279 0 0 0 chr15 6319837 6319868 -79375886 + (CA)n Simple_repeat Simple_repeat 2 32 0 269 267 95 43 chr15 6320424 6320540 -79375214 + MIR SINE MIR 9 130 -132 388 310 9 0 chr15 6320540 6320656 -79375098 - MLT1H LTR MaLR -325 224 108 183 286 36 0 chr15 6321293 6321349 -79374405 + L2 LINE L2 3224 3281 -32 1808 135 12 55 chr15 6321400 6321726 -79374028 + AluJo SINE Alu 1 312 0 291 54 0 0 chr15 6324320 6324357 -79371397 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 263 308 48 10 chr15 6324406 6324510 -79371244 - L2 LINE L2 -52 3261 3154 187 274 226 0 chr15 6324530 6324632 -79371122 - L2 LINE L2 -8 3305 3181 307 351 58 0 chr15 6324723 6324894 -79370860 - L2 LINE L2 -610 2704 2524 731 189 44 9 chr15 6325180 6325406 -79370348 - MER57A LTR ERV1 0 403 201 359 183 49 12 chr15 6325391 6325473 -79370281 - LTR54 LTR ERV1 -271 239 155 * 424 81 16 0 chr15 6325473 6325535 -79370219 + (TC)n Simple_repeat Simple_repeat 2 64 0 761 163 95 0 chr15 6325562 6325709 -79370045 - LTR54 LTR ERV1 -345 165 5 313 241 25 13 chr15 6325852 6325931 -79369823 + GA-rich Low_complexity Low_complexity 3 82 0 2205 127 0 3 chr15 6326138 6326445 -79369309 - AluSc SINE Alu -3 306 1 5624 191 45 28 chr15 6327201 6328661 -79367093 + L1MB3 LINE L1 3982 5415 -768 2450 67 3 3 chr15 6328661 6328959 -79366795 - AluY SINE Alu -13 298 1 5624 191 45 28 chr15 6328959 6329166 -79366588 + L1MB3 LINE L1 5415 5617 -566 333 0 0 0 chr15 6329166 6329203 -79366551 + (TG)n Simple_repeat Simple_repeat 1 37 0 5624 191 45 28 chr15 6329203 6329226 -79366528 + L1MB3 LINE L1 5617 5638 -545 1720 178 0 0 chr15 6329226 6329490 -79366264 - AluJb SINE Alu -32 280 17 5624 191 45 28 chr15 6329490 6329969 -79365785 + L1MB3 LINE L1 5638 6183 0 1456 165 26 0 chr15 6329964 6330230 -79365524 + L1M3 LINE L1 5428 5700 -480 * 265 241 130 37 chr15 6330534 6330642 -79365112 + L2 LINE L2 3187 3304 -9 1934 136 0 52 chr15 6331365 6331551 -79364203 - AluSx SINE Alu -5 307 144 2585 71 0 0 chr15 6331551 6331862 -79363892 - AluY SINE Alu 0 311 1 1934 136 0 52 chr15 6331862 6331999 -79363755 - AluSx SINE Alu -168 144 1 495 242 33 0 chr15 6332188 6332308 -79363446 + MIR SINE MIR 139 262 0 916 182 17 22 chr15 6333236 6333417 -79362337 - MLT2D LTR ERVL -234 180 1 1890 215 20 51 chr15 6333429 6333795 -79361959 + L1M4 LINE L1 4484 4829 -1317 1573 107 5 9 chr15 6333795 6334011 -79361743 - AluSg/x SINE Alu -13 297 83 1890 215 20 51 chr15 6334011 6334197 -79361557 + L1M4 LINE L1 4829 5019 -1127 606 309 55 60 chr15 6334320 6334486 -79361268 + HAL1b LINE L1 73 238 -1110 2274 94 3 0 chr15 6334486 6334801 -79360953 - AluSg SINE Alu 0 316 1 606 309 55 60 chr15 6334801 6335101 -79360653 + HAL1b LINE L1 238 539 -809 2947 82 13 0 chr15 6335106 6335497 -79360257 + L1PA10 LINE L1 5757 6152 -16 24 0 0 0 chr15 6335499 6335523 -79360231 + AT_rich Low_complexity Low_complexity 1 24 0 1594 169 29 88 chr15 6335698 6336153 -79359601 + L1MB7 LINE L1 4946 5373 -773 3557 146 51 2 chr15 6336157 6336280 -79359474 + L1MA9 LINE L1 5653 5768 -544 258 105 0 0 chr15 6336280 6336318 -79359436 + (TG)n Simple_repeat Simple_repeat 1 38 0 3557 146 51 2 chr15 6336318 6336823 -79358931 + L1MA9 LINE L1 5768 6312 0 371 56 19 0 chr15 6336841 6336895 -79358859 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4266 160 23 27 chr15 6337224 6337427 -79358327 + L1MB7 LINE L1 5366 5568 -616 2613 56 0 0 chr15 6337427 6337732 -79358022 + AluY SINE Alu 1 305 -6 4266 160 23 27 chr15 6337732 6338345 -79357409 + L1MB7 LINE L1 5568 6179 -5 1113 141 32 2 chr15 6338382 6338630 -79357124 + AluSx SINE Alu 2 309 -1 1650 232 99 92 chr15 6338917 6338991 -79356763 + L1MC5 LINE L1 6541 6613 -1348 468 0 0 0 chr15 6338991 6339043 -79356711 + (TG)n Simple_repeat Simple_repeat 2 53 0 1650 232 99 92 chr15 6339043 6339516 -79356238 + L1MC5 LINE L1 6613 7108 -853 2090 129 7 3 chr15 6339516 6339811 -79355943 - AluSx SINE Alu -16 296 1 1650 232 99 92 chr15 6339811 6340128 -79355626 + L1MC5 LINE L1 7108 7421 -540 1057 133 0 0 chr15 6340183 6340334 -79355420 + AluSg/x SINE Alu 144 294 -16 515 248 7 0 chr15 6340343 6340496 -79355258 + GA-rich Low_complexity Low_complexity 4 157 0 1930 135 40 10 chr15 6340569 6340872 -79354882 + AluJb SINE Alu 1 312 0 308 314 25 38 chr15 6341002 6341161 -79354593 + L1ME3A LINE L1 6013 6169 -1 273 301 152 2 chr15 6341608 6341756 -79353998 + MIR SINE MIR 16 182 -62 2522 73 0 3 chr15 6342253 6342566 -79353188 + AluSx SINE Alu 1 312 0 883 220 17 0 chr15 6343294 6343464 -79352290 + MLT1C LTR MaLR 1 173 -217 1020 151 58 16 chr15 6343464 6343751 -79352003 + AluJo SINE Alu 1 353 0 998 222 32 5 chr15 6343783 6343999 -79351755 + MLT1C LTR MaLR 246 467 0 930 238 110 12 chr15 6344167 6344486 -79351268 - MSTD LTR MaLR 0 396 21 2605 116 16 49 chr15 6344486 6344933 -79350821 + MSTB1 LTR MaLR 1 432 0 930 238 110 12 chr15 6344933 6344957 -79350797 - MSTD LTR MaLR -375 21 1 300 182 61 0 chr15 6345126 6345192 -79350562 + LTR50 LTR ERVL 1 70 -725 251 299 106 23 chr15 6345230 6345447 -79350307 + L2 LINE L2 666 900 -2414 1289 224 131 8 chr15 6345599 6345965 -79349789 + L1MD2 LINE L1 5949 6359 0 231 333 138 8 chr15 6346342 6346465 -79349289 + L2 LINE L2 3134 3272 0 1356 157 39 74 chr15 6346509 6346533 -79349221 - L1MC3 LINE L1 0 7785 7762 1800 125 14 54 chr15 6346533 6346671 -79349083 + AluSx SINE Alu 1 143 -167 2339 43 0 7 chr15 6346671 6346950 -79348804 + AluY SINE Alu 35 311 0 1800 125 14 54 chr15 6346950 6347133 -79348621 + AluSx SINE Alu 143 310 0 1356 157 39 74 chr15 6347133 6347444 -79348310 - L1MC3 LINE L1 -23 7762 7461 4053 163 59 131 chr15 6347455 6347988 -79347766 - L1MC3 LINE L1 -658 7127 6557 299 65 22 0 chr15 6347988 6348034 -79347720 + MADE1 DNA Mariner 1 47 -33 4053 163 59 131 chr15 6348034 6348516 -79347238 - L1MC3 LINE L1 -1228 6557 6172 2039 147 0 7 chr15 6348516 6348822 -79346932 - AluSx SINE Alu -8 304 1 4053 163 59 131 chr15 6348822 6349046 -79346708 - L1MC3 LINE L1 -1613 6172 5934 1411 116 5 0 chr15 6349146 6349353 -79346401 + AluSp SINE Alu 90 297 -16 2361 160 21 36 chr15 6349353 6349610 -79346144 - L1MC3 LINE L1 -1928 5857 5609 1798 161 3 7 chr15 6349610 6349909 -79345845 + AluJb SINE Alu 1 298 -14 2361 160 21 36 chr15 6349909 6350119 -79345635 - L1MC3 LINE L1 -2176 5609 5397 2598 64 0 0 chr15 6350455 6350766 -79344988 - AluY SINE Alu 0 311 1 285 280 21 0 chr15 6351291 6351384 -79344370 + MIR SINE MIR 59 153 -109 383 289 128 50 chr15 6351457 6351699 -79344055 + Charlie8 DNA MER1_type 6 266 -2151 436 32 16 16 chr15 6352207 6352270 -79343484 + (CAT)n Simple_repeat Simple_repeat 1 63 0 760 192 0 0 chr15 6352416 6352541 -79343213 - FLAM_A SINE Alu -8 125 1 3841 150 147 107 chr15 6352563 6352663 -79343091 - Tigger6a DNA MER2_type -514 1083 988 2705 36 0 0 chr15 6352663 6352967 -79342787 - AluY SINE Alu -7 304 1 3841 150 147 107 chr15 6352967 6353907 -79341847 - Tigger6a DNA MER2_type -609 988 1 286 255 7 111 chr15 6353907 6354060 -79341694 + L2 LINE L2 3169 3305 -8 24 0 0 0 chr15 6354288 6354312 -79341442 + AT_rich Low_complexity Low_complexity 1 24 0 1356 120 0 0 chr15 6354312 6354496 -79341258 - AluSg/x SINE Alu -16 294 111 297 212 0 15 chr15 6354667 6354733 -79341021 - L2 LINE L2 -301 2971 2907 578 246 50 17 chr15 6355040 6355219 -79340535 + MER5A DNA MER1_type 3 187 -2 2178 125 0 0 chr15 6355412 6355709 -79340045 - AluSx SINE Alu -15 297 1 358 277 190 39 chr15 6355853 6356163 -79339591 + L1ME LINE L1 5258 5617 -504 320 267 10 10 chr15 6357188 6357289 -79338465 - L1MC4a LINE L1 -1893 5915 5815 2125 114 10 3 chr15 6357325 6357622 -79338132 + AluSx SINE Alu 1 299 -13 272 287 140 15 chr15 6357627 6357763 -79337991 - L1ME3A LINE L1 -30 6140 5988 303 174 96 43 chr15 6357878 6357993 -79337761 - L1MC5 LINE L1 -431 7530 7410 2039 101 0 7 chr15 6357995 6358271 -79337483 - AluSc SINE Alu -2 307 34 260 294 50 102 chr15 6358294 6358592 -79337162 - HAL1b LINE L1 -809 539 277 1897 137 4 14 chr15 6358592 6358895 -79336859 - AluSx SINE Alu 0 308 9 260 294 50 102 chr15 6358895 6359115 -79336639 - HAL1b LINE L1 -1071 277 47 3160 64 52 9 chr15 6359528 6359562 -79336192 - MLT2A1 LTR ERVL -6 438 407 497 89 25 0 chr15 6359562 6359641 -79336113 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3160 64 52 9 chr15 6359641 6360026 -79335728 - MLT2A1 LTR ERVL -37 407 1 2245 64 0 44 chr15 6360293 6360637 -79335117 - AluY SINE Alu 0 331 1 368 164 15 0 chr15 6361037 6361104 -79334650 - L1MC4a LINE L1 -2035 5773 5706 956 205 252 20 chr15 6361109 6361411 -79334343 + MSTD LTR MaLR 1 372 -24 375 164 44 3 chr15 6361443 6361523 -79334231 + MSTD LTR MaLR 324 396 0 184 256 205 0 chr15 6361824 6361902 -79333852 - L2 LINE L2 -38 3234 3141 471 187 79 50 chr15 6364921 6365060 -79330694 + LTR45B LTR ERV1 342 484 -5 338 183 0 0 chr15 6366224 6366284 -79329470 + L2 LINE L2 3251 3310 -3 813 153 0 0 chr15 6366545 6366663 -79329091 + FLAM_C SINE Alu 1 118 -25 2249 112 7 0 chr15 6366920 6367224 -79328530 - AluSx SINE Alu -6 306 1 2667 180 13 42 chr15 6368492 6368563 -79327191 - MLT2B2 LTR ERVL 0 515 443 1985 119 51 14 chr15 6368563 6368857 -79326897 + AluSx SINE Alu 1 305 -7 2667 180 13 42 chr15 6368857 6369308 -79326446 - MLT2B2 LTR ERVL -72 443 8 2351 97 0 3 chr15 6369912 6370211 -79325543 + AluSg SINE Alu 1 298 -12 521 279 113 22 chr15 6370822 6370881 -79324873 - MIR SINE MIR -6 256 204 2272 104 0 3 chr15 6370881 6371180 -79324574 + AluY SINE Alu 1 298 -13 521 279 113 22 chr15 6371180 6371342 -79324412 - MIR SINE MIR -58 204 15 797 246 123 29 chr15 6371781 6372255 -79323499 - MLT2F LTR ERVL -23 640 98 1077 169 0 0 chr15 6372262 6372434 -79323320 + FRAM SINE Alu 1 172 -4 1171 53 0 0 chr15 6372878 6373011 -79322743 + AluY SINE Alu 1 133 -178 2595 55 3 3 chr15 6373012 6373321 -79322433 + AluY SINE Alu 1 309 -2 2470 187 118 42 chr15 6373330 6373955 -79321799 + L1MB1 LINE L1 5446 6118 -50 1228 102 0 18 chr15 6374056 6374222 -79321532 - AluSq SINE Alu -150 163 1 437 294 37 27 chr15 6375080 6375267 -79320487 - MIR SINE MIR -65 197 9 1705 73 9 18 chr15 6375534 6375752 -79320002 - AluSq SINE Alu -97 216 1 233 233 0 0 chr15 6376027 6376070 -79319684 + (CA)n Simple_repeat Simple_repeat 2 44 0 2604 214 92 42 chr15 6376369 6376586 -79319168 - L1MD2 LINE L1 -3 6750 6545 333 0 0 0 chr15 6376586 6376623 -79319131 + (TG)n Simple_repeat Simple_repeat 2 38 0 2604 214 92 42 chr15 6376623 6377111 -79318643 - L1MD2 LINE L1 -208 6545 5993 2129 128 3 0 chr15 6377111 6377407 -79318347 - AluSx SINE Alu -13 299 3 2604 214 92 42 chr15 6377407 6377552 -79318202 - L1MD2 LINE L1 -760 5993 5857 1682 122 50 4 chr15 6377562 6377824 -79317930 - AluSx SINE Alu -1 311 38 1296 217 97 26 chr15 6377842 6377944 -79317810 - L1MD2 LINE L1 -1794 4746 4653 2344 128 34 0 chr15 6377944 6378296 -79317458 + THE1B LTR MaLR 1 364 0 1296 217 97 26 chr15 6378296 6378576 -79317178 - L1MD2 LINE L1 -1887 4653 4337 558 250 61 0 chr15 6378690 6378886 -79316868 - L1MD2 LINE L1 -3003 3537 3330 4116 167 39 34 chr15 6378917 6378977 -79316777 - L1MB4 LINE L1 -41 6139 6081 2453 84 0 0 chr15 6378977 6379275 -79316479 + AluSc SINE Alu 1 298 -11 4116 167 39 34 chr15 6379275 6380090 -79315664 - L1MB4 LINE L1 -99 6081 5260 * 5356 231 91 76 chr15 6380084 6380467 -79315287 - L1MD2 LINE L1 -3351 3189 2813 2015 152 0 0 chr15 6380467 6380764 -79314990 - AluSx SINE Alu -15 297 1 5356 231 91 76 chr15 6380764 6381549 -79314205 - L1MD2 LINE L1 -3727 2813 2041 2088 133 3 7 chr15 6381549 6381858 -79313896 + AluSx SINE Alu 1 308 -4 5356 231 91 76 chr15 6381858 6382415 -79313339 - L1MD2 LINE L1 -4499 2041 1494 2048 93 22 0 chr15 6382415 6382683 -79313071 - AluSx SINE Alu -25 287 14 5356 231 91 76 chr15 6382683 6384046 -79311708 - L1MD2 LINE L1 -5046 1494 41 1860 132 0 29 chr15 6384214 6384494 -79311260 + AluSq SINE Alu 1 272 -41 2193 95 31 0 chr15 6385393 6385687 -79310067 + AluSx SINE Alu 1 303 -9 2182 152 40 71 chr15 6386157 6386636 -79309118 - MER21A LTR ERV1 -9 922 459 1590 54 32 36 chr15 6386636 6386857 -79308897 - AluY SINE Alu -91 220 1 1185 173 240 0 chr15 6386858 6387112 -79308642 - MER21B LTR ERV1 -548 315 1 259 280 51 42 chr15 6388157 6388275 -79307479 + MLT1H LTR MaLR 433 536 -13 402 264 42 0 chr15 6389402 6389546 -79306208 - MLT2E LTR ERVL -9 619 470 600 227 87 35 chr15 6389626 6389798 -79305956 - MLT2E LTR ERVL -318 310 130 563 245 125 35 chr15 6389963 6390163 -79305591 - MER20 DNA MER1_type -1 218 1 436 213 37 37 chr15 6390172 6390308 -79305446 + Charlie7 DNA MER1_type 2277 2412 -200 980 151 7 0 chr15 6390309 6390455 -79305299 + AluJo SINE Alu 1 147 -165 301 64 0 0 chr15 6391139 6391186 -79304568 + L1MB4 LINE L1 6134 6180 0 7126 225 29 32 chr15 6391232 6391472 -79304282 + L1M4 LINE L1 2964 3203 -2943 2414 100 0 3 chr15 6391472 6391783 -79303971 - AluSx SINE Alu -2 310 1 7126 225 29 32 chr15 6391783 6392090 -79303664 + L1M4 LINE L1 3203 3509 -2637 1604 178 44 17 chr15 6392090 6392419 -79303335 + AluJb SINE Alu 1 312 0 7126 225 29 32 chr15 6392419 6393264 -79302490 + L1M4 LINE L1 3509 4352 -1794 2229 124 0 0 chr15 6393264 6393571 -79302183 + AluSx SINE Alu 1 307 -5 7126 225 29 32 chr15 6393571 6394161 -79301593 + L1M4 LINE L1 4352 4942 -1204 318 244 11 22 chr15 6394176 6394266 -79301488 - L1MC4 LINE L1 -1339 6703 6615 280 71 0 71 chr15 6394269 6394339 -79301415 + (TA)n Simple_repeat Simple_repeat 2 66 0 2196 104 0 3 chr15 6394339 6394626 -79301128 - AluSc SINE Alu -23 286 1 3619 194 74 25 chr15 6394626 6395215 -79300539 + L1MB8 LINE L1 4891 5450 -728 2400 93 3 0 chr15 6395215 6395525 -79300229 + AluY SINE Alu 1 311 0 3619 194 74 25 chr15 6395525 6396150 -79299604 + L1MB8 LINE L1 5450 6168 -10 2230 103 3 28 chr15 6396235 6396598 -79299156 + AluSx SINE Alu 1 355 0 658 197 0 58 chr15 6396642 6396779 -79298975 + FLAM_C SINE Alu 2 130 -3 2230 81 3 11 chr15 6397263 6397573 -79298181 - AluY SINE Alu 0 308 1 1987 214 49 62 chr15 6397870 6398504 -79297250 - MLT1E2 LTR MaLR 0 626 1 279 289 68 55 chr15 6399886 6400121 -79295633 + MER110-int LTR ERV1 3160 3397 -3404 2263 104 16 3 chr15 6400370 6400677 -79295077 + AluSq SINE Alu 1 311 -2 324 70 0 0 chr15 6400764 6400807 -79294947 + (CA)n Simple_repeat Simple_repeat 2 44 0 2238 123 7 0 chr15 6401153 6401499 -79294255 + AluSx SINE Alu 1 348 0 2320 119 0 0 chr15 6402025 6402335 -79293419 + AluSx SINE Alu 1 310 -2 264 135 0 0 chr15 6402405 6402442 -79293312 + AluSg/x SINE Alu 142 178 -122 1392 166 11 42 chr15 6402487 6402752 -79293002 + AluJo SINE Alu 47 303 -9 390 339 49 36 chr15 6402758 6403065 -79292689 + MER110-int LTR ERV1 2426 2736 -1911 6981 195 66 37 chr15 6403133 6404705 -79291049 + MER52A LTR ERV1 136 1753 -2 189 0 0 0 chr15 6404859 6404880 -79290874 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2110 128 32 35 chr15 6405111 6405487 -79290267 + THE1C LTR MaLR 1 375 0 265 333 9 9 chr15 6406450 6406564 -79289190 + MER70-int LTR ERVL 4552 4665 -358 1614 242 69 10 chr15 6406917 6407440 -79288314 + L1MCc LINE L1 1002 1571 -4851 1985 148 7 0 chr15 6407460 6407758 -79287996 + AluSx SINE Alu 3 302 -10 688 244 21 50 chr15 6407775 6407944 -79287810 + L1MCc LINE L1 2279 2441 -4681 1862 175 0 3 chr15 6407944 6408241 -79287513 - AluSx SINE Alu -16 296 1 688 244 21 50 chr15 6408241 6408309 -79287445 + L1MCc LINE L1 2441 2509 -4613 * 1529 188 39 36 chr15 6408287 6408671 -79287083 + L1ME1 LINE L1 6165 6549 -2288 441 141 81 101 chr15 6408671 6408770 -79286984 - LTR12 LTR ERV1 -132 582 313 1320 155 0 48 chr15 6408770 6409041 -79286713 - AluY SINE Alu -20 291 34 1492 142 60 173 chr15 6409070 6409522 -79286232 - LTR12 LTR ERV1 -313 401 1 941 204 97 94 chr15 6409585 6409772 -79285982 + L1ME1 LINE L1 6574 6759 -202 2417 115 13 31 chr15 6409772 6410154 -79285600 + THE1C LTR MaLR 1 375 0 941 204 97 94 chr15 6410154 6410348 -79285406 + L1ME1 LINE L1 6759 6956 -5 2194 112 0 3 chr15 6410903 6411199 -79284555 + AluY SINE Alu 1 295 -16 574 249 104 37 chr15 6411235 6411476 -79284278 - L1ME3A LINE L1 -99 6071 5815 1135 79 13 26 chr15 6412108 6412260 -79283494 + AluSq/x SINE Alu 1 150 -163 526 95 0 0 chr15 6412261 6412335 -79283419 + Alu SINE Alu 222 295 -17 342 221 75 80 chr15 6414426 6414639 -79281115 + L1ME1 LINE L1 4943 5154 -992 1852 196 101 13 chr15 6414646 6415120 -79280634 + L1ME1 LINE L1 5648 6163 -3 270 81 0 0 chr15 6416239 6416276 -79279478 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 266 248 99 30 chr15 6417559 6417660 -79278094 - MER94 DNA DNA -23 111 4 634 190 224 6 chr15 6418007 6418181 -79277573 + MER20 DNA MER1_type 2 213 -6 2161 93 43 7 chr15 6418685 6418986 -79276768 + AluSx SINE Alu 1 312 0 2104 116 0 17 chr15 6419247 6419541 -79276213 - AluSx SINE Alu -23 289 1 891 194 164 64 chr15 6419649 6419979 -79275775 + MLT1A1 LTR MaLR 3 365 0 1446 180 0 4 chr15 6420196 6420435 -79275319 - MER8 DNA MER2_type 0 239 2 1236 126 0 0 chr15 6420628 6420802 -79274952 - AluSg/x SINE Alu 0 310 137 3640 44 0 0 chr15 6420902 6421337 -79274417 + L1PA5 LINE L1 5716 6150 -4 1369 94 0 0 chr15 6421340 6421510 -79274244 + AluSp SINE Alu 130 299 -14 2285 99 3 10 chr15 6423318 6423621 -79272133 - AluSx SINE Alu -11 301 1 748 279 276 17 chr15 6423656 6424186 -79271568 + L2 LINE L2 2309 2975 -339 1687 225 57 14 chr15 6424224 6424642 -79271112 - MLT1C LTR MaLR -5 462 27 2486 84 0 3 chr15 6424643 6424953 -79270801 - AluY SINE Alu -2 309 1 2427 88 0 13 chr15 6424953 6425261 -79270493 - AluSq SINE Alu -9 304 1 1415 174 33 10 chr15 6425798 6426097 -79269657 + L1MB7 LINE L1 5562 5867 -317 821 238 117 57 chr15 6426097 6426483 -79269271 + LTR48B LTR ERV1 1 409 -213 1304 133 0 10 chr15 6426507 6426702 -79269052 + AluSg/x SINE Alu 119 311 -1 2094 115 21 24 chr15 6426703 6427043 -79268711 + MSTC LTR MaLR 88 426 -2 228 250 32 97 chr15 6428073 6428197 -79267557 - MER69A DNA AcHobo -19 158 43 2585 222 80 43 chr15 6428282 6429049 -79266705 + MER21B LTR ERV1 12 806 -57 2239 122 0 3 chr15 6429448 6429751 -79266003 - AluSx SINE Alu -8 304 3 1238 185 13 21 chr15 6430045 6430283 -79265471 - LTR8 LTR ERV1 0 691 456 3303 128 78 32 chr15 6430291 6430890 -79264864 - MER41B LTR ERV1 -8 627 1 2174 121 61 93 chr15 6430890 6431359 -79264395 - LTR8 LTR ERV1 -232 459 6 2425 84 0 0 chr15 6431724 6432032 -79263722 - AluSg SINE Alu -2 308 1 191 121 15 76 chr15 6432177 6432243 -79263511 + GA-rich Low_complexity Low_complexity 2 63 0 1415 121 4 82 chr15 6432924 6433205 -79262549 + AluJb SINE Alu 34 292 -20 2430 73 3 7 chr15 6433781 6434084 -79261670 + AluSp SINE Alu 1 302 -11 890 126 0 15 chr15 6434084 6434211 -79261543 - FLAM_C SINE Alu -175 127 1 280 243 0 78 chr15 6436150 6436253 -79259501 - MLT1K LTR MaLR -111 477 383 2222 105 0 3 chr15 6436645 6436939 -79258815 + AluSx SINE Alu 1 293 -19 203 237 0 0 chr15 6437068 6437106 -79258648 + G-rich Low_complexity Low_complexity 1 38 0 400 215 56 0 chr15 6437110 6437217 -79258537 - MLT1A2 LTR MaLR -200 174 62 3250 92 18 2 chr15 6437218 6437676 -79258078 - Charlie3 DNA MER1_type -4 2706 2242 2885 102 93 9 chr15 6437670 6438130 -79257624 - Charlie3 DNA MER1_type -2210 500 2 * 336 247 41 10 chr15 6438173 6438270 -79257484 - LTR45B LTR ERV1 -39 450 351 443 191 0 22 chr15 6438393 6438482 -79257272 - MER72 LTR ERV1 -266 456 370 374 149 75 0 chr15 6438673 6438740 -79257014 - MLT1A2 LTR MaLR -302 72 1 350 147 46 67 chr15 6439053 6439162 -79256592 + MER41B LTR ERV1 191 323 -269 * 929 184 150 49 chr15 6439160 6439427 -79256327 + MER66A LTR ERV1 184 477 -1 244 322 51 76 chr15 6439461 6439815 -79255939 - L1ME LINE L1 -410 5711 5367 1948 174 36 0 chr15 6439974 6440308 -79255446 + MER7A DNA MER2_type 2 345 -1 228 159 0 23 chr15 6440362 6440392 -79255362 + (TATG)n Simple_repeat Simple_repeat 2 32 -12 1652 185 14 11 chr15 6440392 6440679 -79255075 - AluJb SINE Alu -24 288 1 228 159 0 23 chr15 6440679 6440692 -79255062 + (TATG)n Simple_repeat Simple_repeat 32 44 0 302 357 24 12 chr15 6440704 6440956 -79254798 - L1ME LINE L1 -1006 5140 4886 286 194 32 54 chr15 6440985 6441078 -79254676 + L1MC4 LINE L1 7864 7954 -88 1077 223 97 19 chr15 6441102 6441421 -79254333 - MER2 DNA MER2_type 0 344 1 2059 96 30 46 chr15 6441483 6441786 -79253968 + AluSx SINE Alu 1 298 -14 248 231 0 0 chr15 6443190 6443242 -79252512 + LTR30 LTR ERV1 1 52 -670 1631 146 16 177 chr15 6443242 6443756 -79251998 + LTR12 LTR ERV1 53 483 -231 227 306 58 50 chr15 6445649 6445770 -79249984 - MIR SINE MIR -43 219 98 236 270 90 0 chr15 6446617 6446702 -79249052 + MIR SINE MIR 32 129 -79 1627 132 14 66 chr15 6446702 6446898 -79248856 - AluJb SINE Alu -3 309 131 2221 112 0 10 chr15 6446898 6447192 -79248562 + AluSq SINE Alu 1 291 -22 1627 132 14 66 chr15 6447192 6447284 -79248470 - AluJb SINE Alu -181 131 36 236 270 90 0 chr15 6447284 6447298 -79248456 + MIR SINE MIR 129 140 -68 311 300 36 0 chr15 6447871 6448011 -79247743 + L1M4 LINE L1 16 160 -6382 389 254 49 60 chr15 6448177 6448362 -79247392 + L1M4 LINE L1 483 665 -5877 225 156 133 0 chr15 6448395 6448440 -79247314 - MER2 DNA MER2_type -28 317 267 1957 161 0 0 chr15 6448440 6448744 -79247010 + AluSx SINE Alu 1 304 -8 1875 126 17 3 chr15 6448750 6449051 -79246703 + L1MA3 LINE L1 6000 6304 -1 1030 187 5 46 chr15 6449057 6449276 -79246478 - MER2 DNA MER2_type -134 211 2 2236 213 79 88 chr15 6449340 6449523 -79246231 + L1M4 LINE L1 724 907 -5739 195 100 0 0 chr15 6449523 6449553 -79246201 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2236 213 79 88 chr15 6449553 6449921 -79245833 + L1M4 LINE L1 907 1277 -5369 1993 128 10 10 chr15 6449921 6450218 -79245536 - AluSx SINE Alu -15 297 1 2236 213 79 88 chr15 6450218 6450965 -79244789 + L1M4 LINE L1 1277 2038 -4608 3208 226 61 13 chr15 6451098 6452204 -79243550 + L1M4 LINE L1 2544 3707 -2937 702 261 125 46 chr15 6452314 6452617 -79243137 + MLT1B LTR MaLR 1 327 -63 260 128 0 0 chr15 6452679 6452718 -79243036 + MLT1B LTR MaLR 335 373 -17 2345 80 7 0 chr15 6452958 6453245 -79242509 - AluSx SINE Alu -23 289 1 900 216 158 18 chr15 6453731 6454004 -79241750 - MER33 DNA MER1_type -2 322 12 2262 119 0 10 chr15 6455224 6455534 -79240220 - AluSg SINE Alu -2 308 2 608 113 66 28 chr15 6455689 6455795 -79239959 + MER46A DNA MER2_type 1 110 -126 361 184 0 0 chr15 6455796 6455872 -79239882 + MER46A DNA MER2_type 158 233 -3 384 211 59 125 chr15 6455892 6455972 -79239782 + MER104 DNA Tc2 35 102 -1796 1944 140 21 0 chr15 6455972 6456257 -79239497 - AluSx SINE Alu -21 291 1 384 211 59 125 chr15 6456257 6456328 -79239426 + MER104 DNA Tc2 102 176 -4 2216 110 13 10 chr15 6457218 6457519 -79238235 + AluSx SINE Alu 1 302 -10 372 303 68 8 chr15 6457519 6457651 -79238103 + MIR SINE MIR 24 163 -99 487 257 33 56 chr15 6458616 6458830 -79236924 + L1ME LINE L1 5366 5574 -590 892 250 111 6 chr15 6458909 6459165 -79236589 + L1M4 LINE L1 4376 4676 -1968 2321 107 7 3 chr15 6459165 6459473 -79236281 + AluSx SINE Alu 1 309 -3 892 250 111 6 chr15 6459473 6459548 -79236206 + L1M4 LINE L1 4676 4742 -1902 2185 122 0 3 chr15 6460673 6460969 -79234785 - AluSx SINE Alu -17 295 1 560 247 80 7 chr15 6461041 6461191 -79234563 - MER58B DNA MER1_type -1 340 180 262 241 115 23 chr15 6463366 6463453 -79232301 - L2 LINE L2 -1 3312 3218 2450 69 3 0 chr15 6463548 6463839 -79231915 - AluY SINE Alu -19 292 1 2466 79 0 3 chr15 6463839 6464142 -79231612 - AluY SINE Alu -9 302 1 466 202 97 24 chr15 6464938 6465062 -79230692 + MLT1E3 LTR MaLR 90 222 -402 282 130 0 0 chr15 6465273 6465319 -79230435 - MLT2F LTR ERVL -2 661 616 282 227 15 15 chr15 6465384 6465450 -79230304 + MIR3 SINE MIR 7 72 -136 23 0 0 0 chr15 6465554 6465577 -79230177 + AT_rich Low_complexity Low_complexity 1 23 0 230 257 121 7 chr15 6466766 6466904 -79228850 + MIR SINE MIR 20 179 -65 180 0 0 0 chr15 6467426 6467446 -79228308 + (A)n Simple_repeat Simple_repeat 1 20 0 2301 109 120 5 chr15 6470490 6470874 -79224880 + MSTA LTR MaLR 1 428 0 7585 128 8 51 chr15 6470874 6472505 -79223249 + MSTA-int LTR MaLR 1 1580 0 2023 137 129 5 chr15 6472505 6472886 -79222868 + MSTA LTR MaLR 1 428 0 1998 113 0 0 chr15 6475448 6475734 -79220020 - AluSx SINE Alu 0 302 17 35 54 0 0 chr15 6476061 6476117 -79219637 + AT_rich Low_complexity Low_complexity 1 56 0 2321 66 7 7 chr15 6476353 6476656 -79219098 - AluY SINE Alu -8 303 1 1901 165 0 13 chr15 6477273 6477589 -79218165 + AluSq SINE Alu 2 313 0 23 0 0 0 chr15 6477767 6477790 -79217964 + AT_rich Low_complexity Low_complexity 1 23 0 2267 80 37 10 chr15 6478060 6478360 -79217394 - AluSp SINE Alu -5 308 1 444 213 213 7 chr15 6478632 6478787 -79216967 - MIR SINE MIR 0 262 76 687 188 43 120 chr15 6478844 6479078 -79216676 + MER20 DNA MER1_type 1 216 -3 2360 91 0 7 chr15 6479713 6480010 -79215744 - AluSx SINE Alu -17 295 1 1903 172 13 0 chr15 6480531 6480839 -79214915 + AluJb SINE Alu 1 312 0 186 43 0 0 chr15 6483575 6483598 -79212156 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1510 186 0 66 chr15 6483969 6484302 -79211452 + AluJo SINE Alu 1 311 -1 2476 56 0 7 chr15 6484668 6484970 -79210784 - AluY SINE Alu -11 300 1 1297 60 72 0 chr15 6485215 6485381 -79210373 - AluY SINE Alu -14 297 120 1034 158 82 0 chr15 6485509 6485705 -79210049 + MER20 DNA MER1_type 8 219 0 1182 168 40 128 chr15 6486640 6486961 -79208793 + AluJo SINE Alu 1 293 -9 447 272 106 57 chr15 6487519 6487884 -79207870 + L1ME LINE L1 4637 5025 -1121 1612 190 7 23 chr15 6488146 6488446 -79207308 + AluJo SINE Alu 4 298 -14 269 308 111 31 chr15 6488466 6488598 -79207156 + L1ME LINE L1 5310 5430 -691 2266 103 0 0 chr15 6488598 6488889 -79206865 + AluSc SINE Alu 1 291 -18 269 308 111 31 chr15 6488889 6489171 -79206583 + L1ME LINE L1 5430 5757 -364 245 280 116 37 chr15 6489531 6489720 -79206034 + L1M4 LINE L1 3661 3864 -2282 1849 160 0 17 chr15 6491262 6491588 -79204166 + AluSx SINE Alu 1 321 0 234 218 13 51 chr15 6492276 6492354 -79203400 - MER20 DNA MER1_type 0 219 145 259 159 0 0 chr15 6492480 6492524 -79203230 + MER96B DNA MER1_type? 191 234 -183 985 147 0 7 chr15 6493355 6493534 -79202220 + AluSg/x SINE Alu 132 309 0 2417 63 0 13 chr15 6493743 6494044 -79201710 + AluY SINE Alu 1 297 -14 1565 188 43 0 chr15 6494507 6494626 -79201128 + AluJo SINE Alu 3 115 -197 234 0 0 0 chr15 6494626 6494652 -79201102 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1565 188 43 0 chr15 6494652 6494814 -79200940 + AluJo SINE Alu 115 296 -16 234 250 42 0 chr15 6496321 6496393 -79199361 + MIR SINE MIR 117 191 -71 35 41 0 0 chr15 6497505 6497554 -79198200 + AT_rich Low_complexity Low_complexity 1 49 0 1048 210 113 0 chr15 6498115 6498406 -79197348 - MER33 DNA MER1_type 0 324 1 1909 149 13 7 chr15 6498601 6498909 -79196845 - AluJb SINE Alu -2 310 1 336 48 0 0 chr15 6498959 6499001 -79196753 + (TG)n Simple_repeat Simple_repeat 1 42 0 725 198 23 109 chr15 6499708 6499877 -79195877 + LTR41 LTR ERVL 482 615 -158 2133 114 3 16 chr15 6499877 6500046 -79195708 - AluSx SINE Alu -10 302 137 2304 65 14 3 chr15 6500046 6500339 -79195415 - AluY SINE Alu -15 296 1 2133 114 3 16 chr15 6500339 6500475 -79195279 - AluSx SINE Alu -175 137 1 725 198 23 109 chr15 6500475 6500608 -79195146 + LTR41 LTR ERVL 615 758 -15 965 190 0 22 chr15 6501953 6502132 -79193622 - AluJb SINE Alu -4 308 134 2335 99 0 3 chr15 6502138 6502440 -79193314 - AluSx SINE Alu -11 301 1 362 312 163 47 chr15 6502859 6503221 -79192533 + L2 LINE L2 2824 3227 -86 2548 59 0 3 chr15 6503238 6503545 -79192209 + AluY SINE Alu 1 306 -5 3378 89 35 8 chr15 6504062 6504570 -79191184 + L1PA14 LINE L1 5640 6161 0 1152 143 107 14 chr15 6504678 6504894 -79190860 - MER46A DNA MER2_type 0 236 1 1622 140 104 3 chr15 6505053 6505360 -79190394 + MER7A DNA MER2_type 11 346 0 244 231 123 0 chr15 6506516 6506581 -79189173 - MER58A DNA MER1_type -32 75 3 292 271 146 0 chr15 6507102 6507198 -79188556 - MIR SINE MIR -125 137 28 2147 121 39 100 chr15 6507855 6508317 -79187437 + Tigger2a DNA MER2_type 1 434 0 4587 123 36 10 chr15 6509367 6510146 -79185608 - L1MA9 LINE L1 -2 6310 5512 2275 101 0 3 chr15 6510415 6510713 -79185041 - AluSx SINE Alu -15 297 1 693 183 111 7 chr15 6510863 6511016 -79184738 + MER58A DNA MER1_type 47 215 -9 677 195 0 23 chr15 6513002 6513130 -79182624 - FLAM_A SINE Alu -8 125 1 2194 108 7 7 chr15 6513716 6514013 -79181741 + AluSg SINE Alu 1 297 -13 280 252 148 9 chr15 6514254 6514369 -79181385 - L2 LINE L2 -1 3312 3182 639 311 153 53 chr15 6514726 6515542 -79180212 - L2 LINE L2 -666 2648 1751 1503 203 0 7 chr15 6515836 6516117 -79179637 + AluJb SINE Alu 1 279 -33 246 32 0 0 chr15 6516117 6516148 -79179606 + (CAA)n Simple_repeat Simple_repeat 2 32 0 251 253 92 23 chr15 6519590 6519677 -79176077 + L1MB8 LINE L1 5562 5654 -467 4653 122 98 61 chr15 6519831 6520392 -79175362 + Tigger3b DNA MER2_type 1 540 -2488 1673 153 51 0 chr15 6520392 6520667 -79175087 + AluSx SINE Alu 1 289 -23 1690 68 135 41 chr15 6520671 6520937 -79174817 + AluY SINE Alu 21 311 0 4653 122 98 61 chr15 6520937 6521396 -79174358 + Tigger3b DNA MER2_type 542 1064 -167 1567 179 57 3 chr15 6521400 6521701 -79174053 - MER7A DNA MER2_type -31 315 1 2498 71 0 0 chr15 6521751 6522048 -79173706 + AluY SINE Alu 1 297 -14 508 264 110 72 chr15 6522624 6522996 -79172758 - MER113 DNA MER1_type? -1 520 123 1904 164 0 10 chr15 6522996 6523294 -79172460 - AluJo SINE Alu -17 295 1 508 264 110 72 chr15 6523294 6523422 -79172332 - MER113 DNA MER1_type? -398 123 1 1561 196 66 17 chr15 6524583 6524991 -79170763 + L1MB8 LINE L1 5741 6168 -10 3815 188 21 7 chr15 6525129 6525852 -79169902 + MER44D DNA MER2_type 1 605 0 390 316 70 41 chr15 6525999 6526556 -79169198 + L1M4 LINE L1 3370 3942 -2204 3195 244 58 24 chr15 6526609 6527673 -79168081 - Charlie1a DNA MER1_type -349 1106 7 22 0 0 0 chr15 6527708 6527730 -79168024 + AT_rich Low_complexity Low_complexity 1 22 0 722 208 19 42 chr15 6527867 6528083 -79167671 + L1MC/D LINE L1 5533 5743 -2065 303 293 46 69 chr15 6528442 6528616 -79167138 + MER5B DNA MER1_type 7 176 -2 231 377 9 9 chr15 6528956 6529070 -79166684 + L2 LINE L2 2948 3061 -211 1730 244 17 28 chr15 6529296 6529768 -79165986 + LTR31 LTR ERV1 115 581 -38 243 0 0 0 chr15 6530169 6530196 -79165558 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3388 144 17 6 chr15 6530290 6530811 -79164943 - MER1A DNA MER1_type 0 527 1 6078 174 32 8 chr15 6531132 6532428 -79163326 + L1PA13 LINE L1 3049 4375 -1771 4763 110 80 25 chr15 6532429 6533218 -79162536 + L1PA13 LINE L1 4646 5390 -773 2273 110 0 0 chr15 6533218 6533518 -79162236 + AluSq SINE Alu 1 300 -13 4763 110 80 25 chr15 6533518 6534185 -79161569 + L1PA13 LINE L1 5390 6152 -11 2136 104 13 13 chr15 6534528 6534826 -79160928 - AluSq SINE Alu -15 298 1 372 284 183 41 chr15 6534826 6535094 -79160660 + HAL1b LINE L1 493 798 -550 514 204 120 7 chr15 6535554 6535696 -79160058 + MER58B DNA MER1_type 181 338 -3 236 319 29 0 chr15 6536024 6536093 -79159661 - MIR3 SINE MIR -10 198 128 * 255 298 220 21 chr15 6536089 6536230 -79159524 + MIR3 SINE MIR 36 204 -4 1708 168 14 20 chr15 6536731 6537023 -79158731 - AluJo SINE Alu -17 295 6 469 121 61 0 chr15 6537336 6537435 -79158319 - L1MB8 LINE L1 -3 6175 6071 1032 221 8 0 chr15 6537440 6537689 -79158065 + L1M4 LINE L1 4907 5157 -989 * 3323 180 78 4 chr15 6537686 6538536 -79157218 - L1MB8 LINE L1 -115 6063 5153 2333 211 104 42 chr15 6538698 6538862 -79156892 + L1ME1 LINE L1 5287 5439 -727 1956 115 11 0 chr15 6538862 6539132 -79156622 - AluSx SINE Alu -38 274 2 2333 211 104 42 chr15 6539132 6539172 -79156582 + L1ME1 LINE L1 5439 5475 -691 1248 171 54 0 chr15 6539172 6539394 -79156360 - MER46A DNA MER2_type 0 236 3 2333 211 104 42 chr15 6539394 6540017 -79155737 + L1ME1 LINE L1 5475 6166 0 21 57 0 0 chr15 6540025 6540060 -79155694 + AT_rich Low_complexity Low_complexity 1 35 0 2412 67 0 7 chr15 6540279 6540577 -79155177 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 6540586 6540607 -79155147 + AT_rich Low_complexity Low_complexity 1 21 0 226 359 31 31 chr15 6540888 6541016 -79154738 - MIR SINE MIR -119 143 16 2712 7 0 0 chr15 6542326 6542623 -79153131 - AluYa5 SINE Alu -14 297 1 1353 67 130 24 chr15 6542645 6542853 -79152901 + MER30 DNA MER1_type 1 230 0 1673 139 139 9 chr15 6544123 6544447 -79151307 + MER47A DNA MER2_type 1 366 0 249 303 0 50 chr15 6545803 6545902 -79149852 + MIR3 SINE MIR 115 208 0 207 0 0 0 chr15 6546392 6546415 -79149339 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 290 110 82 55 chr15 6546515 6546588 -79149166 - MADE1 DNA Mariner 0 80 6 184 306 122 20 chr15 6547456 6547554 -79148200 - L2 LINE L2 -1884 1430 1323 195 171 49 49 chr15 6547560 6547601 -79148153 - L2 LINE L2 -73 3240 3200 500 204 12 126 chr15 6548350 6548605 -79147149 + L1MC4a LINE L1 6044 6269 -1539 24 67 0 0 chr15 6548618 6548663 -79147091 + AT_rich Low_complexity Low_complexity 1 45 0 2149 129 7 0 chr15 6548848 6549151 -79146603 + AluSx SINE Alu 1 305 -7 435 266 38 22 chr15 6549151 6549335 -79146419 + L1ME3A LINE L1 5939 6125 -45 1074 196 28 40 chr15 6549483 6549810 -79145944 + L1MC5 LINE L1 7003 7325 -636 550 173 4 9 chr15 6549810 6549920 -79145834 + MER33 DNA MER1_type 1 100 -88 447 172 69 28 chr15 6549978 6550123 -79145631 + MER33 DNA MER1_type 88 238 -86 239 224 86 9 chr15 6550175 6550291 -79145463 + L1MC5 LINE L1 7344 7468 -493 2132 105 3 7 chr15 6550426 6550722 -79145032 + AluSq SINE Alu 1 295 -18 672 182 0 0 chr15 6550893 6551014 -79144740 - MER46A DNA MER2_type -94 142 22 474 246 41 35 chr15 6551036 6551207 -79144547 + L1MC5 LINE L1 7753 7924 -37 194 293 24 30 chr15 6551592 6551706 -79144048 - L2 LINE L2 -248 3024 2914 426 317 55 35 chr15 6551711 6551910 -79143844 - L2 LINE L2 -2 3311 3109 273 294 66 116 chr15 6551956 6552334 -79143420 - L2 LINE L2 -411 2903 2545 288 0 0 0 chr15 6552722 6552754 -79143000 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 183 80 0 0 chr15 6552785 6552810 -79142944 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 242 215 75 47 chr15 6553112 6553219 -79142535 + L1ME3A LINE L1 6061 6170 0 411 268 87 22 chr15 6553243 6553381 -79142373 + Charlie8 DNA MER1_type 97 243 -2174 489 236 108 32 chr15 6553535 6553692 -79142062 + MIR SINE MIR 78 246 -16 468 207 61 61 chr15 6554309 6554473 -79141281 + L1ME3A LINE L1 5787 5950 -220 448 266 169 0 chr15 6554602 6554756 -79140998 + L2 LINE L2 3127 3306 -7 1802 132 0 59 chr15 6556875 6557179 -79138575 - AluSx SINE Alu -13 299 14 6431 67 5 46 chr15 6557652 6558886 -79136868 + L1PA8 LINE L1 4970 6166 -6 1878 101 36 42 chr15 6559362 6559668 -79136086 - AluSg SINE Alu -6 304 1 1888 111 0 4 chr15 6559671 6559932 -79135822 - AluSx SINE Alu -3 309 50 504 257 138 13 chr15 6560188 6560340 -79135414 + MIR SINE MIR 66 236 -26 266 314 101 6 chr15 6560703 6560933 -79134821 + L1ME LINE L1 5561 5647 -474 184 214 48 0 chr15 6561076 6561118 -79134636 + MIR SINE MIR 198 241 -21 512 312 136 55 chr15 6562450 6563374 -79132380 + L1M2 LINE L1 388 1295 -5554 247 131 0 33 chr15 6563375 6563436 -79132318 + (CGGGG)n Simple_repeat Simple_repeat 1 59 0 1278 204 23 3 chr15 6564734 6565038 -79130716 - L1M4 LINE L1 -970 5176 4867 528 214 58 30 chr15 6565376 6565654 -79130100 + MER33 DNA MER1_type 10 363 0 290 244 25 101 chr15 6565868 6565987 -79129767 + L2 LINE L2 3204 3313 0 203 331 16 33 chr15 6566320 6566441 -79129313 + MER5A DNA MER1_type 3 121 -68 716 179 33 26 chr15 6566521 6566672 -79129082 + MER58B DNA MER1_type 187 338 -3 7898 158 59 34 chr15 6566848 6567481 -79128273 - L1MA3 LINE L1 0 6305 5689 2047 115 10 7 chr15 6567481 6567776 -79127978 - AluSx SINE Alu -16 296 1 7898 158 59 34 chr15 6567776 6567859 -79127895 - L1MA3 LINE L1 -616 5689 5610 2025 89 96 0 chr15 6567859 6568141 -79127613 - AluY SINE Alu -2 309 1 7898 158 59 34 chr15 6568141 6569298 -79126456 - L1MA3 LINE L1 -695 5610 4483 180 0 0 0 chr15 6569298 6569318 -79126436 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 7898 158 59 34 chr15 6569318 6569862 -79125892 - L1MA3 LINE L1 -1822 4483 3791 2295 130 80 8 chr15 6569862 6570261 -79125493 - MSTA LTR MaLR 0 428 1 7898 158 59 34 chr15 6570261 6570556 -79125198 - L1MA3 LINE L1 -2514 3791 3505 4064 218 74 63 chr15 6571229 6571590 -79124164 + L1M4 LINE L1 3041 3396 -2750 1970 134 24 0 chr15 6571590 6571880 -79123874 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr15 6571889 6571912 -79123842 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4064 218 74 63 chr15 6571912 6573596 -79122158 + L1M4 LINE L1 3403 5000 -1146 2045 142 0 3 chr15 6573596 6573898 -79121856 - AluSx SINE Alu -11 301 1 4064 218 74 63 chr15 6573898 6574232 -79121522 + L1M4 LINE L1 5000 5329 -817 1545 94 5 0 chr15 6574335 6574536 -79121218 + AluSq SINE Alu 84 285 -28 324 0 0 0 chr15 6574536 6574572 -79121182 + (CAT)n Simple_repeat Simple_repeat 2 37 0 606 128 53 0 chr15 6574572 6574666 -79121088 + FLAM_C SINE Alu 31 129 -14 22 35 0 0 chr15 6575029 6575058 -79120696 + AT_rich Low_complexity Low_complexity 1 29 0 301 234 13 0 chr15 6576121 6576198 -79119556 + L1MB2 LINE L1 6093 6170 -1 624 250 58 16 chr15 6576854 6577042 -79118712 + MER45C DNA AcHobo 17 212 -741 378 239 110 9 chr15 6577245 6577354 -79118400 + MER45C DNA AcHobo 470 589 -364 1359 168 72 0 chr15 6577639 6577901 -79117853 + MER45B DNA AcHobo 713 993 -47 331 294 155 46 chr15 6578340 6578738 -79117016 - L1MC4a LINE L1 -297 5824 5433 2114 118 3 0 chr15 6578826 6578995 -79116759 - AluSx SINE Alu -14 298 126 180 0 0 0 chr15 6578995 6579015 -79116739 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2114 118 3 0 chr15 6579015 6579142 -79116612 - AluSx SINE Alu -186 126 1 775 171 105 7 chr15 6579195 6579347 -79116407 - L1MD3 LINE L1 -15 7980 7814 195 42 0 0 chr15 6579719 6579743 -79116011 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr15 6580094 6580129 -79115625 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr15 6580399 6580443 -79115311 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 6580559 6580608 -79115146 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 6580769 6580791 -79114963 + AT_rich Low_complexity Low_complexity 1 22 0 1072 238 142 114 chr15 6580803 6582039 -79113715 + L1MC5 LINE L1 6637 7906 -55 665 286 172 29 chr15 6582117 6582593 -79113161 + MLT1H LTR MaLR 6 549 0 1981 146 10 3 chr15 6583489 6583784 -79111970 - AluSx SINE Alu -15 297 1 21 57 0 0 chr15 6583931 6583966 -79111788 + AT_rich Low_complexity Low_complexity 1 35 0 2493 50 7 0 chr15 6583966 6584263 -79111491 - AluY SINE Alu -12 299 1 2100 106 7 7 chr15 6584309 6584602 -79111152 - AluSg1 SINE Alu -16 293 1 992 104 0 7 chr15 6585605 6585749 -79110005 + FRAM SINE Alu 20 162 -14 318 67 0 0 chr15 6585969 6586014 -79109740 + (GA)n Simple_repeat Simple_repeat 1 45 0 2251 75 14 0 chr15 6586357 6586651 -79109103 - AluY SINE Alu -13 298 1 1250 176 42 139 chr15 6586721 6587125 -79108629 + MLT1A1 LTR MaLR 1 365 0 2045 94 4 7 chr15 6587385 6587660 -79108094 + AluSp SINE Alu 29 302 -11 4261 204 62 44 chr15 6588179 6588223 -79107531 - L1MD2 LINE L1 -9 6350 6308 2094 158 0 0 chr15 6588223 6588527 -79107227 + AluSx SINE Alu 1 304 -8 4261 204 62 44 chr15 6588527 6588685 -79107069 - L1MD2 LINE L1 -51 6308 6154 251 27 0 27 chr15 6588685 6588722 -79107032 + (TG)n Simple_repeat Simple_repeat 1 36 0 4261 204 62 44 chr15 6588722 6589073 -79106681 - L1MD2 LINE L1 -205 6154 5811 2552 62 0 0 chr15 6589073 6589378 -79106376 - AluY SINE Alu -6 305 1 4261 204 62 44 chr15 6589378 6589440 -79106314 - L1MD2 LINE L1 -548 5811 5752 1728 179 13 19 chr15 6589440 6589753 -79106001 + AluJo SINE Alu 1 311 -1 4261 204 62 44 chr15 6589753 6590442 -79105312 - L1MD2 LINE L1 -607 5752 5022 231 337 33 0 chr15 6590836 6590928 -79104826 - L2 LINE L2 -40 3273 3179 238 113 19 38 chr15 6591780 6591833 -79103921 + CT-rich Low_complexity Low_complexity 1 52 0 3636 147 21 20 chr15 6592166 6592770 -79102984 - MER6A DNA MER2_type 0 605 1 2522 70 3 3 chr15 6593255 6593568 -79102186 - AluSp SINE Alu 0 313 1 518 259 84 93 chr15 6593660 6594089 -79101665 - L2 LINE L2 -70 3243 2819 340 145 4 49 chr15 6594123 6594178 -79101576 - Alu SINE Alu -1 300 258 1834 107 52 0 chr15 6594178 6594448 -79101306 - AluSx SINE Alu -28 284 1 340 145 4 49 chr15 6594448 6594468 -79101286 - Alu SINE Alu -43 258 239 1838 275 104 14 chr15 6594475 6595174 -79100580 - L2 LINE L2 -628 2686 1925 1976 99 10 7 chr15 6595604 6595897 -79099857 + AluSc SINE Alu 1 294 -15 2298 70 0 3 chr15 6596722 6597032 -79098722 + AluY SINE Alu 1 309 0 216 205 0 0 chr15 6597103 6597142 -79098612 - L2 LINE L2 -10 3303 3265 1348 145 9 14 chr15 6597170 6597391 -79098363 - AluJb SINE Alu -3 309 90 2128 201 37 80 chr15 6597393 6597582 -79098172 - L1M4 LINE L1 -2937 3209 3014 2296 97 0 0 chr15 6597582 6597882 -79097872 + AluY SINE Alu 1 300 -11 2128 201 37 80 chr15 6597882 6598497 -79097257 - L1M4 LINE L1 -3132 3014 2439 2364 91 3 0 chr15 6598658 6598956 -79096798 + AluSc SINE Alu 1 299 -10 269 142 124 159 chr15 6599385 6599498 -79096256 + MLT1F1 LTR MaLR 1 109 -458 30 27 0 0 chr15 6599498 6599535 -79096219 + AT_rich Low_complexity Low_complexity 1 37 0 1944 134 10 33 chr15 6599535 6599840 -79095914 + AluSx SINE Alu 1 298 -14 752 179 27 0 chr15 6599840 6599952 -79095802 - AluJo/FLAM SINE Alu -196 116 2 1439 212 42 111 chr15 6599954 6600404 -79095350 + MLT1F1 LTR MaLR 94 507 -60 2313 85 7 19 chr15 6600404 6600711 -79095043 - AluSg SINE Alu -7 303 1 1439 212 42 111 chr15 6600711 6600765 -79094989 + MLT1F1 LTR MaLR 507 563 -4 799 172 0 22 chr15 6600777 6600911 -79094843 + FLAM_C SINE Alu 2 132 -11 915 249 75 31 chr15 6600921 6600932 -79094822 + L1MD2 LINE L1 3151 3160 -2986 2075 154 0 0 chr15 6600932 6601237 -79094517 + AluSx SINE Alu 1 305 -7 915 249 75 31 chr15 6601237 6601638 -79094116 + L1MD2 LINE L1 3160 3581 -2565 * 4627 206 53 31 chr15 6601627 6602704 -79093050 + L1MD2 LINE L1 4588 5711 -648 2301 81 20 0 chr15 6602704 6603001 -79092753 + AluSp SINE Alu 1 303 -10 4627 206 53 31 chr15 6603001 6603635 -79092119 + L1MD2 LINE L1 5711 6329 -30 1014 229 86 67 chr15 6604332 6604778 -79090976 + MLT1C LTR MaLR 1 458 -9 746 107 14 29 chr15 6605477 6605617 -79090137 + L1MA4 LINE L1 6160 6297 -3 2164 108 10 0 chr15 6605651 6605946 -79089808 + AluSx SINE Alu 1 298 -14 2145 139 25 79 chr15 6606055 6606220 -79089534 + L1MB7 LINE L1 5663 5835 -349 618 138 165 18 chr15 6606220 6606329 -79089425 + FLAM_A SINE Alu 1 125 -8 2145 139 25 79 chr15 6606329 6606595 -79089159 + L1MB7 LINE L1 5835 6071 -113 462 216 11 0 chr15 6606678 6606766 -79088988 - MER2 DNA MER2_type 0 345 257 994 69 0 0 chr15 6606766 6606882 -79088872 + AluY SINE Alu 1 116 -195 522 78 0 0 chr15 6606883 6606947 -79088807 + Alu SINE Alu 231 294 -15 1658 165 4 0 chr15 6606949 6607210 -79088544 - MER2 DNA MER2_type -82 263 2 361 78 20 0 chr15 6607406 6607457 -79088297 - MER75 DNA T2_type 0 504 453 2246 100 0 3 chr15 6607847 6608137 -79087617 - AluSq SINE Alu -24 289 1 1840 177 0 7 chr15 6608193 6608493 -79087261 + AluJb SINE Alu 1 298 -14 338 264 0 0 chr15 6608517 6608604 -79087150 - L2 LINE L2 -4 3268 3182 1772 139 7 17 chr15 6608623 6608911 -79086843 - AluJb SINE Alu -17 295 11 703 191 22 15 chr15 6608930 6609066 -79086688 - AluJb SINE Alu -174 138 2 1513 176 3 30 chr15 6610502 6610797 -79084957 - L1MB7 LINE L1 -185 5999 5713 726 212 15 0 chr15 6610800 6610937 -79084817 + Tigger1 DNA MER2_type 1 139 -2279 * 1122 154 32 41 chr15 6610933 6611154 -79084600 + Tigger1 DNA MER2_type 2200 2418 0 2299 158 21 76 chr15 6611154 6611472 -79084282 - L1MB7 LINE L1 -466 5712 5378 997 72 29 22 chr15 6611472 6611610 -79084144 + MER85 DNA T2_type 1 139 0 2299 158 21 76 chr15 6611610 6612168 -79083586 - L1MB7 LINE L1 -800 5378 4903 298 202 0 0 chr15 6612193 6612249 -79083505 - MIR3 SINE MIR -50 158 102 237 65 0 0 chr15 6612709 6612740 -79083014 + (T)n Simple_repeat Simple_repeat 1 31 0 2128 102 0 3 chr15 6612897 6613201 -79082553 + AluSx SINE Alu 3 305 0 282 220 0 0 chr15 6613328 6613387 -79082367 + Charlie8 DNA MER1_type 33 91 -2326 297 140 20 0 chr15 6613471 6613521 -79082233 + Charlie8 DNA MER1_type 1374 1424 -993 1458 92 0 83 chr15 6613994 6614223 -79081531 + AluSg SINE Alu 1 210 -100 309 323 21 0 chr15 6614290 6614383 -79081371 + L2 LINE L2 3153 3247 -25 185 262 82 16 chr15 6615797 6615858 -79079896 - L2 LINE L2 -41 3231 3167 1427 180 20 56 chr15 6617508 6617656 -79078098 + AluJo SINE Alu 1 134 -178 1988 159 0 7 chr15 6617656 6617958 -79077796 + AluJo SINE Alu 1 300 -12 1427 180 20 56 chr15 6617958 6618114 -79077640 + AluJo SINE Alu 134 294 -18 214 317 61 0 chr15 6618394 6618476 -79077278 + L2 LINE L2 3185 3271 -1 309 277 31 23 chr15 6618939 6619069 -79076685 + L1M4 LINE L1 4904 5034 -1112 2200 76 0 96 chr15 6619678 6620022 -79075732 - AluSx SINE Alu -1 311 1 28 29 0 0 chr15 6624554 6624589 -79071165 + AT_rich Low_complexity Low_complexity 1 35 0 2348 96 3 0 chr15 6625444 6625746 -79070008 - AluSg SINE Alu -7 303 1 641 220 100 13 chr15 6625846 6625996 -79069758 - MER3 DNA MER1_type 0 209 47 1551 83 69 14 chr15 6626026 6626120 -79069634 - MER30 DNA MER1_type -1 229 142 2379 94 0 3 chr15 6626120 6626417 -79069337 + AluSx SINE Alu 1 296 -16 1551 83 69 14 chr15 6626417 6626539 -79069215 - MER30 DNA MER1_type -88 142 1 1782 159 20 17 chr15 6627101 6627403 -79068351 - AluJb SINE Alu -9 303 1 2238 76 7 33 chr15 6627410 6627849 -79067905 - AluSg SINE Alu 0 431 1 2247 67 7 3 chr15 6627926 6628232 -79067522 - AluY SINE Alu 0 307 1 2416 74 0 6 chr15 6628725 6629036 -79066718 + AluSc SINE Alu 1 309 0 1342 174 5 5 chr15 6629591 6629810 -79065944 - AluSg/x SINE Alu -9 303 85 6183 142 25 22 chr15 6630157 6631313 -79064441 - L1MA10 LINE L1 -4 6330 5171 259 306 97 15 chr15 6631340 6631474 -79064280 + MIR SINE MIR 10 154 -108 222 62 0 0 chr15 6631817 6631849 -79063905 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 6633607 6633628 -79062126 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 22 0 0 0 chr15 6633701 6633723 -79062031 + AT_rich Low_complexity Low_complexity 1 22 0 205 236 164 73 chr15 6634116 6634146 -79061608 - MIR3 SINE MIR -25 183 157 464 321 38 11 chr15 6634146 6634330 -79061424 + MER5A DNA MER1_type 1 189 0 205 236 164 73 chr15 6634330 6634409 -79061345 - MIR3 SINE MIR -51 157 64 27 62 0 0 chr15 6636157 6636205 -79059549 + AT_rich Low_complexity Low_complexity 1 48 0 878 163 14 0 chr15 6636349 6636496 -79059258 + FAM SINE Alu 21 169 -16 399 296 208 26 chr15 6636511 6636963 -79058791 + L1ME LINE L1 4310 4843 -1303 365 79 40 13 chr15 6637125 6637195 -79058559 + (TA)n Simple_repeat Simple_repeat 2 74 0 2197 101 7 3 chr15 6637195 6637483 -79058271 - AluSq SINE Alu -24 289 1 643 209 71 75 chr15 6637708 6637975 -79057779 + L1ME LINE L1 5523 5784 -337 39 60 0 0 chr15 6638052 6638119 -79057635 + AT_rich Low_complexity Low_complexity 1 67 0 196 132 0 57 chr15 6638136 6638189 -79057565 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 211 182 0 0 chr15 6638227 6638260 -79057494 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 309 36 0 chr15 6639493 6639577 -79056177 + LTR67 LTR ERVL 107 193 -364 193 95 0 143 chr15 6641157 6641199 -79054555 + L3b LINE CR1 1540 1575 -8 16546 121 22 11 chr15 6641339 6643730 -79052024 + Tigger1 DNA MER2_type 1 2417 -1 2043 146 0 0 chr15 6644058 6644346 -79051408 + AluSx SINE Alu 1 288 -24 286 125 21 0 chr15 6644397 6644445 -79051309 - MLT1A2 LTR MaLR 0 374 326 5302 198 97 41 chr15 6644446 6645673 -79050081 - MLT1A1-int LTR MaLR -439 1296 1 1808 179 36 30 chr15 6645673 6646012 -79049742 - MLT1A1 LTR MaLR 0 365 29 2352 141 28 19 chr15 6646012 6646373 -79049381 + THE1B LTR MaLR 1 364 0 12594 84 9 9 chr15 6646373 6647954 -79047800 + THE1B-int LTR MaLR 1 1580 0 2437 137 28 14 chr15 6647954 6648313 -79047441 + THE1B LTR MaLR 1 364 0 1808 179 36 30 chr15 6648313 6648334 -79047420 - MLT1A1 LTR MaLR -335 30 1 477 227 100 47 chr15 6648475 6648625 -79047129 - MER46A DNA MER2_type -78 158 1 * 1107 181 60 9 chr15 6648491 6648707 -79047047 + MER46A DNA MER2_type 1 227 -9 205 306 88 31 chr15 6649391 6649551 -79046203 + MIR SINE MIR 20 188 -74 1032 254 155 32 chr15 6649725 6650506 -79045248 - L2 LINE L2 0 3313 2434 291 316 45 82 chr15 6650635 6650879 -79044875 - L2 LINE L2 -13 3259 3025 2346 94 3 0 chr15 6651420 6651718 -79044036 + AluSx SINE Alu 1 299 -13 1687 100 0 0 chr15 6652634 6652854 -79042900 + AluSc SINE Alu 1 220 -89 2535 48 0 0 chr15 6653332 6653624 -79042130 - AluY SINE Alu -19 292 1 671 315 133 0 chr15 6654034 6654336 -79041418 - L2 LINE L2 -509 2805 2464 266 244 13 32 chr15 6654411 6654531 -79041223 + L1ME4a LINE L1 5325 5429 -737 1713 180 103 28 chr15 6654577 6655005 -79040749 + MLT1C LTR MaLR 6 465 -2 785 306 68 16 chr15 6655008 6655315 -79040439 + L1ME4a LINE L1 5484 5806 -315 4414 140 32 29 chr15 6655318 6656069 -79039685 + L1MC1 LINE L1 5570 6322 -11 2165 100 21 0 chr15 6656071 6656350 -79039404 + AluSx SINE Alu 1 285 -27 34 42 0 0 chr15 6656374 6656422 -79039332 + AT_rich Low_complexity Low_complexity 1 48 0 829 100 0 0 chr15 6656455 6656565 -79039189 - AluSg/x SINE Alu -8 304 195 490 189 5 55 chr15 6656681 6656821 -79038933 + L1MC4 LINE L1 7845 8042 0 2376 87 0 0 chr15 6656836 6657134 -79038620 + AluY SINE Alu 1 298 -13 351 258 132 13 chr15 6657148 6657307 -79038447 + L1ME4a LINE L1 5939 6116 -5 471 248 48 28 chr15 6657658 6657803 -79037951 + HAL1 LINE L1 1047 1194 -1313 1122 196 97 33 chr15 6657856 6658187 -79037567 + HAL1 LINE L1 1296 1647 -860 491 261 200 74 chr15 6658208 6658445 -79037309 + MLT1L LTR MaLR 5 211 -404 2148 117 0 19 chr15 6658445 6658581 -79037173 + AluSx SINE Alu 1 138 -174 2491 67 0 10 chr15 6658581 6658895 -79036859 + AluY SINE Alu 1 311 0 2148 117 0 19 chr15 6658895 6659066 -79036688 + AluSx SINE Alu 138 302 -10 491 261 200 74 chr15 6659066 6659287 -79036467 + MLT1L LTR MaLR 211 521 -94 2370 125 149 8 chr15 6661095 6661470 -79034284 - MSTA LTR MaLR 0 428 1 1768 181 54 25 chr15 6661673 6662027 -79033727 - MLT1A1 LTR MaLR 0 365 2 2056 113 41 0 chr15 6662136 6662429 -79033325 + AluSg SINE Alu 1 305 -5 481 181 55 48 chr15 6662440 6662586 -79033168 + L1ME1 LINE L1 6017 6162 -2 210 360 33 7 chr15 6662887 6663037 -79032717 - L2 LINE L2 -474 2840 2687 243 360 11 0 chr15 6663163 6663252 -79032502 + Charlie4 DNA MER1_type 1867 1956 -5 360 152 0 0 chr15 6664557 6664623 -79031131 + (CA)n Simple_repeat Simple_repeat 2 67 0 1960 87 20 0 chr15 6665711 6665965 -79029789 + AluSq SINE Alu 44 302 -11 355 292 179 40 chr15 6667140 6667469 -79028285 + HAL1 LINE L1 91 465 -2042 3348 137 16 2 chr15 6667525 6668030 -79027724 - L1MB3 LINE L1 -11 6172 5661 398 255 0 11 chr15 6668030 6668124 -79027630 + HAL1 LINE L1 811 903 -1604 1794 170 0 13 chr15 6668158 6668469 -79027285 + AluJb SINE Alu 1 307 -5 1199 244 132 9 chr15 6668472 6668927 -79026827 + HAL1 LINE L1 1104 1614 -893 603 221 202 54 chr15 6669085 6669402 -79026352 - L2 LINE L2 0 3313 2950 298 248 112 8 chr15 6669775 6669900 -79025854 - MIR SINE MIR -102 160 23 262 254 30 0 chr15 6670739 6670806 -79024948 + L1MC4a LINE L1 7739 7807 -1 200 278 262 0 chr15 6670833 6671024 -79024730 + L2 LINE L2 664 904 -2410 231 277 61 34 chr15 6671256 6671404 -79024350 - HAL1 LINE L1 -665 1842 1691 311 213 101 77 chr15 6671410 6671528 -79024226 - L1MC5 LINE L1 -36 7925 7800 2164 123 0 19 chr15 6671528 6671845 -79023909 - AluSq SINE Alu 0 313 3 311 213 101 77 chr15 6671845 6671895 -79023859 - L1MC5 LINE L1 -161 7800 7753 779 156 0 0 chr15 6671918 6672027 -79023727 + FLAM_C SINE Alu 18 126 -17 431 310 92 4 chr15 6672789 6673028 -79022726 + L1ME LINE L1 5561 5820 -301 233 329 13 0 chr15 6673036 6673112 -79022642 + L2 LINE L2 1177 1253 -2061 1616 125 101 87 chr15 6673171 6673538 -79022216 + L1MB8 LINE L1 5806 6177 -1 1523 159 34 23 chr15 6673807 6674071 -79021683 - AluJb SINE Alu -45 267 1 514 248 117 5 chr15 6674078 6674284 -79021470 + L1ME4a LINE L1 5713 5941 -180 203 345 0 0 chr15 6675181 6675239 -79020515 + MIR SINE MIR 90 147 -115 284 238 12 0 chr15 6675438 6675518 -79020236 - L1MB8 LINE L1 -2 6176 6096 2058 130 7 7 chr15 6676029 6676330 -79019424 + AluSq SINE Alu 1 301 -12 1908 121 0 0 chr15 6676785 6677041 -79018713 + AluSx SINE Alu 49 304 -8 989 267 48 22 chr15 6677960 6678275 -79017479 + L1ME LINE L1 5372 5694 -476 2555 50 3 0 chr15 6678361 6678661 -79017093 + AluY SINE Alu 1 301 -10 2742 278 129 45 chr15 6678838 6679114 -79016640 + L1M4 LINE L1 2773 3024 -3122 1882 161 0 0 chr15 6679114 6679405 -79016349 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr15 6679409 6679429 -79016325 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2742 278 129 45 chr15 6679429 6680632 -79015122 + L1M4 LINE L1 3026 4126 -2020 2906 122 23 25 chr15 6680632 6681067 -79014687 - Tigger2a DNA MER2_type 0 434 1 2742 278 129 45 chr15 6681067 6681378 -79014376 + L1M4 LINE L1 4126 4409 -1737 4437 77 18 0 chr15 6681378 6681922 -79013832 - MER41A LTR ERV1 0 554 1 2742 278 129 45 chr15 6681922 6682450 -79013304 + L1M4 LINE L1 4409 5295 -851 24 32 0 0 chr15 6682704 6682735 -79013019 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 170 20 chr15 6682891 6683244 -79012510 - L2 LINE L2 -997 2317 1912 23 0 0 0 chr15 6687076 6687099 -79008655 + AT_rich Low_complexity Low_complexity 1 23 0 2052 153 25 25 chr15 6689315 6689680 -79006074 + MLT1A1 LTR MaLR 1 365 0 222 329 114 25 chr15 6692626 6692784 -79002970 - L2 LINE L2 -10 3303 3132 2334 95 3 7 chr15 6693045 6693351 -79002403 + AluSg SINE Alu 1 305 -5 2230 114 0 0 chr15 6693364 6693654 -79002100 + AluSx SINE Alu 1 290 -22 2249 67 3 11 chr15 6693770 6694092 -79001662 - AluY SINE Alu 0 320 1 2535 230 184 22 chr15 6695357 6695474 -79000280 + L1MC4 LINE L1 6484 6581 -1461 294 29 0 0 chr15 6695474 6695509 -79000245 + (CA)n Simple_repeat Simple_repeat 2 36 0 2535 230 184 22 chr15 6695509 6696349 -78999405 + L1MC4 LINE L1 6581 7596 -446 184 270 81 40 chr15 6696423 6696497 -78999257 - L2 LINE L2 0 3313 3237 460 291 49 85 chr15 6697202 6697648 -78998106 + MLT1J LTR MaLR 5 434 -77 2131 104 10 0 chr15 6697686 6697975 -78997779 + AluSc SINE Alu 5 296 -13 252 290 65 19 chr15 6698408 6698515 -78997239 + MLT1K LTR MaLR 457 568 -20 449 203 0 6 chr15 6698612 6698775 -78996979 + (CCA)n Simple_repeat Simple_repeat 3 164 0 2829 190 55 4 chr15 6698879 6699783 -78995971 - L1MC2 LINE L1 -486 5927 4968 2211 95 7 3 chr15 6699784 6700078 -78995676 + AluSg SINE Alu 1 295 -15 1141 157 0 0 chr15 6700104 6700270 -78995484 - AluJb SINE Alu -144 168 3 804 248 5 0 chr15 6700272 6700470 -78995284 - L1MC2 LINE L1 -2404 3811 3613 914 122 0 6 chr15 6700655 6700836 -78994918 + (CCA)n Simple_repeat Simple_repeat 1 180 0 603 206 0 0 chr15 6700866 6701041 -78994713 + (CCA)n Simple_repeat Simple_repeat 3 177 0 312 208 0 0 chr15 6701058 6701154 -78994600 + (CCA)n Simple_repeat Simple_repeat 3 98 0 501 239 8 45 chr15 6701512 6701646 -78994108 + MIR SINE MIR 112 240 -22 2308 115 0 0 chr15 6701800 6702105 -78993649 - AluSx SINE Alu -7 305 1 218 79 0 26 chr15 6703270 6703308 -78992446 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2318 100 0 0 chr15 6703778 6704079 -78991675 - AluSx SINE Alu -11 301 1 29 90 0 0 chr15 6705351 6705429 -78990325 + AT_rich Low_complexity Low_complexity 1 78 0 2381 75 0 3 chr15 6705436 6705730 -78990024 + AluSg SINE Alu 1 293 -17 1554 135 0 12 chr15 6706176 6706421 -78989333 + AluJo SINE Alu 71 312 0 1507 158 29 40 chr15 6707242 6707520 -78988234 + AluJb SINE Alu 9 283 -29 958 248 83 73 chr15 6707936 6708525 -78987229 - L1ME4a LINE L1 -14 6107 5513 372 332 60 11 chr15 6708577 6708842 -78986912 - L1MC2 LINE L1 -3532 2683 2406 260 261 72 29 chr15 6708965 6709103 -78986651 - L1MC2 LINE L1 -4055 2341 2198 264 289 0 12 chr15 6709242 6709325 -78986429 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2303 95 0 3 chr15 6709623 6709927 -78985827 - AluY SINE Alu -8 303 1 21 0 0 0 chr15 6710715 6710736 -78985018 + AT_rich Low_complexity Low_complexity 1 21 0 1609 179 0 11 chr15 6711010 6711289 -78984465 + AluJo SINE Alu 23 298 -14 1351 13 0 0 chr15 6711969 6712119 -78983635 - AluYb8 SINE Alu -2 316 167 2384 84 0 7 chr15 6713494 6713793 -78981961 + AluSq SINE Alu 1 297 -16 214 258 114 30 chr15 6714010 6714142 -78981612 + MIR SINE MIR 120 262 0 2373 89 0 0 chr15 6714298 6714589 -78981165 - AluSc SINE Alu -18 291 1 506 195 81 16 chr15 6714744 6714867 -78980887 + MLT1C LTR MaLR 64 194 -311 24 32 0 0 chr15 6715006 6715037 -78980717 + AT_rich Low_complexity Low_complexity 1 31 0 712 191 24 154 chr15 6715064 6715310 -78980444 + MLT1C LTR MaLR 170 460 -7 2071 133 0 7 chr15 6715824 6716149 -78979605 - AluSx SINE Alu 0 323 1 1986 111 14 4 chr15 6716860 6717172 -78978582 + AluSq SINE Alu 3 317 0 599 235 33 66 chr15 6717238 6717451 -78978303 - L2 LINE L2 0 3313 3108 2015 95 9 76 chr15 6717656 6717972 -78977782 - AluSx SINE Alu -16 296 2 25 0 0 0 chr15 6717993 6718018 -78977736 + AT_rich Low_complexity Low_complexity 1 25 0 434 292 113 11 chr15 6718042 6718227 -78977527 - MIR SINE MIR -7 255 52 22 0 0 0 chr15 6719148 6719170 -78976584 + GC_rich Low_complexity Low_complexity 1 22 0 4268 169 105 53 chr15 6720104 6720240 -78975514 - Tigger6a DNA MER2_type -514 1083 955 1754 152 3 13 chr15 6720240 6720549 -78975205 + AluJo SINE Alu 3 308 -4 4268 169 105 53 chr15 6720549 6721337 -78974417 - Tigger6a DNA MER2_type -642 955 97 1850 151 0 21 chr15 6721337 6721655 -78974099 - AluJb SINE Alu 0 316 5 4268 169 105 53 chr15 6721655 6721757 -78973997 - Tigger6a DNA MER2_type -1500 97 2 210 119 0 48 chr15 6721763 6721805 -78973949 + (TA)n Simple_repeat Simple_repeat 2 41 0 6912 211 68 40 chr15 6722329 6724505 -78971249 + L1M4 LINE L1 37 2150 -4496 2448 86 0 0 chr15 6724505 6724806 -78970948 + AluY SINE Alu 1 301 -10 6912 211 68 40 chr15 6724806 6724818 -78970936 + L1M4 LINE L1 2150 2160 -4486 1900 155 27 0 chr15 6724818 6724939 -78970815 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr15 6724939 6724974 -78970780 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1900 155 27 0 chr15 6724974 6725149 -78970605 + AluJo SINE Alu 117 305 -7 6912 211 68 40 chr15 6725149 6725456 -78970298 + L1M4 LINE L1 2160 2699 -3947 829 230 45 45 chr15 6725453 6725766 -78969988 + L1M4 LINE L1 3539 3851 -2793 * 844 191 13 0 chr15 6725771 6725923 -78969831 + FRAM SINE Alu 1 40 0 415 209 17 9 chr15 6725923 6726038 -78969716 + GA-rich Low_complexity Low_complexity 4 119 0 349 269 15 8 chr15 6726041 6726175 -78969579 + L1M4 LINE L1 3881 4015 -2629 455 230 0 0 chr15 6726178 6726265 -78969489 + L2 LINE L2 3218 3304 -9 2170 114 0 0 chr15 6726460 6726749 -78969005 - AluSx SINE Alu -23 289 1 231 173 0 0 chr15 6726777 6726829 -78968925 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 225 79 0 chr15 6726829 6726918 -78968836 + MER112 DNA MER1_type 67 162 -98 647 312 50 80 chr15 6726918 6727307 -78968447 + L2 LINE L2 293 663 -2651 2518 53 0 0 chr15 6727307 6727606 -78968148 - AluY SINE Alu -12 299 1 647 312 50 80 chr15 6727606 6727751 -78968003 + L2 LINE L2 663 811 -2503 493 235 69 104 chr15 6727751 6728011 -78967743 - MER102a DNA MER1_type -2 328 78 266 271 110 88 chr15 6728128 6728158 -78967596 + HAL1 LINE L1 149 177 -2330 2481 52 3 13 chr15 6728158 6728464 -78967290 + AluY SINE Alu 1 303 -8 266 271 110 88 chr15 6728464 6728862 -78966892 + HAL1 LINE L1 177 622 -1885 708 255 47 56 chr15 6728906 6729247 -78966507 - HAL1 LINE L1 -335 2172 1835 481 30 30 0 chr15 6729248 6729315 -78966439 + (GA)n Simple_repeat Simple_repeat 2 70 0 234 95 0 48 chr15 6729318 6729360 -78966394 - MLT2C1 LTR ERVL -48 349 310 390 96 41 0 chr15 6729402 6729475 -78966279 + GA-rich Low_complexity Low_complexity 2 77 0 1588 184 34 24 chr15 6729478 6729806 -78965948 - MLT2D LTR ERVL -20 534 55 3444 275 113 44 chr15 6729884 6729985 -78965769 + L1ME3A LINE L1 1868 1961 -4254 2108 124 3 7 chr15 6729985 6730291 -78965463 - AluSq SINE Alu -8 305 1 3444 275 113 44 chr15 6730291 6730526 -78965228 + L1ME3A LINE L1 1961 2178 -4037 2345 95 0 0 chr15 6730526 6730821 -78964933 + AluY SINE Alu 9 303 -8 3444 275 113 44 chr15 6730821 6731911 -78963843 + L1ME3A LINE L1 2178 3192 -3023 501 230 22 65 chr15 6731911 6732050 -78963704 - MER94 DNA DNA 0 134 2 3444 275 113 44 chr15 6732050 6732448 -78963306 + L1ME3A LINE L1 3192 3561 -2654 1579 174 34 31 chr15 6732448 6732741 -78963013 + AluJo SINE Alu 1 294 -18 3444 275 113 44 chr15 6732741 6733361 -78962393 + L1ME3A LINE L1 3561 4137 -2078 3144 176 26 11 chr15 6733361 6733902 -78961852 - MER44D DNA MER2_type -1 604 1 3444 275 113 44 chr15 6733902 6734059 -78961695 + L1ME3A LINE L1 4137 4282 -1933 2281 79 28 0 chr15 6734059 6734350 -78961404 - AluSx SINE Alu -13 299 1 2488 64 0 0 chr15 6734359 6734657 -78961097 - AluY SINE Alu -11 300 3 3444 275 113 44 chr15 6734657 6735222 -78960532 + L1ME3A LINE L1 4289 5341 -874 2132 84 30 7 chr15 6735297 6735594 -78960160 + AluSg SINE Alu 1 304 -6 560 247 124 6 chr15 6735596 6735853 -78959901 + L1ME3A LINE L1 5365 5644 -595 558 262 48 6 chr15 6735862 6736030 -78959724 + LTR41 LTR ERVL 7 181 -592 369 250 47 123 chr15 6736280 6736556 -78959198 + LTR41 LTR ERVL 510 764 -9 861 273 54 24 chr15 6736592 6736926 -78958828 + L1ME3A LINE L1 5693 6036 -203 203 217 196 0 chr15 6737145 6737191 -78958563 - L2 LINE L2 -81 3191 3137 2098 142 0 0 chr15 6737241 6737588 -78958166 - AluJb SINE Alu 0 347 1 1489 243 105 101 chr15 6737651 6738009 -78957745 + L1MEd LINE L1 78 433 -5686 1920 151 0 7 chr15 6738009 6738300 -78957454 + AluSx SINE Alu 24 312 0 1489 243 105 101 chr15 6738300 6738810 -78956944 + L1MEd LINE L1 433 949 -5170 331 360 100 20 chr15 6739745 6739945 -78955809 + L2 LINE L2 3056 3271 -1 1081 211 100 106 chr15 6739989 6740501 -78955253 - MLT1J LTR MaLR 0 511 3 270 310 0 0 chr15 6741156 6741227 -78954527 - L2 LINE L2 -1 3312 3242 2561 60 0 0 chr15 6742336 6742637 -78953117 + AluY SINE Alu 1 301 -10 2069 116 0 0 chr15 6742639 6742924 -78952830 + AluSq SINE Alu 17 301 -12 316 308 122 51 chr15 6742987 6743176 -78952578 - L1ME LINE L1 -508 5654 5443 2289 108 0 3 chr15 6743176 6743482 -78952272 + AluSx SINE Alu 1 305 -7 316 308 122 51 chr15 6743482 6743529 -78952225 - L1ME LINE L1 -719 5443 5401 393 231 23 69 chr15 6743580 6743753 -78952001 - L1ME LINE L1 -874 5272 5108 4849 146 26 43 chr15 6745283 6745378 -78950376 + L1PB4 LINE L1 5254 5349 -954 1881 144 16 19 chr15 6745378 6745691 -78950063 - AluSx SINE Alu 0 312 1 4849 146 26 43 chr15 6745691 6745836 -78949918 + L1PB4 LINE L1 5349 5495 -808 2140 109 0 0 chr15 6745836 6746120 -78949634 - AluSg SINE Alu -26 284 1 4849 146 26 43 chr15 6746120 6746811 -78948943 + L1PB4 LINE L1 5495 6300 -3 2209 111 7 0 chr15 6747023 6747321 -78948433 + AluSx SINE Alu 1 300 -12 209 258 0 41 chr15 6747694 6747791 -78947963 + CT-rich Low_complexity Low_complexity 4 96 0 306 286 85 54 chr15 6747792 6748016 -78947738 - MLT1H-int LTR MaLR -832 539 309 297 278 26 9 chr15 6748024 6748139 -78947615 - MLT1H-int LTR MaLR -1250 121 5 1028 264 117 34 chr15 6748143 6748647 -78947107 - MLT1H LTR MaLR 0 549 4 433 351 50 32 chr15 6748807 6749089 -78946665 - L3 LINE CR1 -78 1499 1213 1484 121 0 5 chr15 6749568 6749775 -78945979 - L1PB1 LINE L1 -2 6149 5944 1973 161 0 19 chr15 6750500 6750817 -78944937 + AluJb SINE Alu 1 311 -1 796 172 11 11 chr15 6750832 6751006 -78944748 + GA-rich Low_complexity Low_complexity 4 177 0 2399 121 121 3 chr15 6751011 6751216 -78944538 + MSTB LTR MaLR 2 181 -245 201 39 0 0 chr15 6751216 6751242 -78944512 + (TC)n Simple_repeat Simple_repeat 1 26 0 2399 121 121 3 chr15 6751242 6751416 -78944338 + MSTB LTR MaLR 181 426 0 702 130 32 24 chr15 6751501 6751624 -78944130 + L1MB4 LINE L1 6057 6180 0 2365 99 0 6 chr15 6751632 6751944 -78943810 - AluSg SINE Alu 0 310 1 1967 122 0 4 chr15 6752929 6753208 -78942546 - AluSx SINE Alu -18 294 17 411 264 145 50 chr15 6753230 6753319 -78942435 - MER5A DNA MER1_type -7 182 103 2532 74 0 0 chr15 6753319 6753629 -78942125 - AluY SINE Alu -1 310 1 411 264 145 50 chr15 6753629 6753698 -78942056 - MER5A DNA MER1_type -86 103 9 293 322 38 2 chr15 6753934 6754044 -78941710 + MER20B DNA MER1_type 86 202 -17 191 250 0 0 chr15 6754112 6754156 -78941598 + L2 LINE L2 774 817 -2497 1653 162 10 43 chr15 6754676 6754978 -78940776 + AluJo SINE Alu 1 292 -20 326 167 30 15 chr15 6757255 6757321 -78938433 - MER58B DNA MER1_type -4 337 271 487 242 12 55 chr15 6759599 6759851 -78935903 + L1MEc LINE L1 2063 2260 -3955 2261 81 3 10 chr15 6759851 6760149 -78935605 - AluSg1 SINE Alu -13 296 1 487 242 12 55 chr15 6760149 6760180 -78935574 + L1MEc LINE L1 2260 2291 -3924 804 133 23 0 chr15 6760180 6760308 -78935446 + AluJb SINE Alu 1 131 -181 267 119 68 8 chr15 6811147 6811265 -78884489 + (TG)n Simple_repeat Simple_repeat 2 126 0 245 143 68 15 chr15 6811279 6811547 -78884207 + (TG)n Simple_repeat Simple_repeat 1 282 0 321 114 60 20 chr15 6811583 6811732 -78884022 + (TG)n Simple_repeat Simple_repeat 1 155 0 1713 155 17 24 chr15 6811914 6812204 -78883550 - AluJb SINE Alu -17 295 8 409 113 141 0 chr15 6812351 6812422 -78883332 - AluJ/FRAM SINE Alu -16 296 216 2042 85 0 0 chr15 6812687 6812934 -78882820 - AluSg SINE Alu -63 247 1 1875 89 0 102 chr15 6816170 6816484 -78879270 - AluSg SINE Alu -28 282 1 2305 74 0 3 chr15 6816665 6816986 -78878768 - AluY SINE Alu 0 320 1 1271 122 5 0 chr15 6816986 6817175 -78878579 + Charlie3 DNA MER1_type 2513 2702 -8 1232 146 5 0 chr15 6817177 6817397 -78878357 - L1MB3 LINE L1 -259 5924 5704 2084 130 0 3 chr15 6817472 6817757 -78877997 - AluSx SINE Alu -28 284 1 3421 203 44 18 chr15 6817757 6818716 -78877038 - L1MB3 LINE L1 -724 5460 4475 2440 86 0 0 chr15 6818967 6819270 -78876484 + AluY SINE Alu 1 303 -8 357 82 0 0 chr15 6822417 6822466 -78873288 + (TG)n Simple_repeat Simple_repeat 1 49 0 6360 17 1 0 chr15 6822798 6823511 -78872243 + L1PA3 LINE L1 5442 6155 0 278 269 64 8 chr15 6825179 6825286 -78870468 - MIR3 SINE MIR -38 170 59 1673 167 7 24 chr15 6825332 6825626 -78870128 - AluJo SINE Alu -23 289 1 2114 190 28 2 chr15 6826458 6826894 -78868860 - L1MB3 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 6826897 6827194 -78868560 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 6827205 6827252 -78868502 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 6827349 6827385 -78868369 + GC_rich Low_complexity Low_complexity 1 36 0 1438 85 15 5 chr15 6828261 6828460 -78867294 + AluSq SINE Alu 1 201 -112 2018 189 13 30 chr15 6828826 6829223 -78866531 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 6830113 6830253 -78865501 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 6830896 6831001 -78864753 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 6831555 6831848 -78863906 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 6831924 6832748 -78863006 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 6832966 6833104 -78862650 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 6832991 6833123 -78862631 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 6833133 6833309 -78862445 + MER58A DNA MER1_type 45 224 0 10792 103 52 17 chr15 6834121 6834329 -78861425 - L1PBa LINE L1 -3752 3110 2911 1802 150 44 7 chr15 6834329 6834622 -78861132 - AluSx SINE Alu -8 304 1 10792 103 52 17 chr15 6834622 6834633 -78861121 - L1PBa LINE L1 -3951 2911 2902 2209 66 27 40 chr15 6834633 6834934 -78860820 - AluY SINE Alu -14 297 1 10792 103 52 17 chr15 6834934 6836977 -78858777 - L1PBa LINE L1 -3960 2902 634 1114 155 26 0 chr15 6836977 6837170 -78858584 - L1PBa LINE L1 -6663 200 3 2046 114 4 0 chr15 6838756 6839028 -78856726 + AluSg SINE Alu 30 302 -8 1056 187 60 60 chr15 6839436 6839719 -78856035 - L1MD2 LINE L1 -2 6357 6075 9747 205 34 13 chr15 6839735 6842079 -78853675 + L1MA9 LINE L1 3011 5403 -743 2400 230 20 52 chr15 6842090 6842762 -78852992 + L1MA9 LINE L1 5543 6190 -122 474 65 0 0 chr15 6842762 6842824 -78852930 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 6842824 6842907 -78852847 + L1MA9 LINE L1 6190 6274 -38 22 0 0 0 chr15 6842910 6842932 -78852822 + AT_rich Low_complexity Low_complexity 1 22 0 982 9 0 0 chr15 6844493 6844600 -78851154 + U6 snRNA snRNA 1 107 0 3832 27 0 0 chr15 6844600 6845038 -78850716 + L1PA3 LINE L1 5711 6148 -7 827 90 0 0 chr15 6845547 6845647 -78850107 + AluSq/x SINE Alu 17 116 -197 801 144 8 0 chr15 6845647 6845772 -78849982 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 6845772 6845959 -78849795 + AluSx SINE Alu 121 308 -4 252 299 41 0 chr15 6846057 6846154 -78849600 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 6847130 6847445 -78848309 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 6847730 6847956 -78847798 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 6848047 6848197 -78847557 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 6848197 6848329 -78847425 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 6848329 6848553 -78847201 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 6848553 6848577 -78847177 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 6848578 6848841 -78846913 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 6848841 6848987 -78846767 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 6849459 6849617 -78846137 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 6849710 6849740 -78846014 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 6850504 6850532 -78845222 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 6851913 6852207 -78843547 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 6852838 6852883 -78842871 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 6853188 6853321 -78842433 - FLAM_C SINE Alu -1 132 2 309 263 130 47 chr15 6853642 6853855 -78841899 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 6853855 6854133 -78841621 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 6855095 6855343 -78840411 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 6855426 6855478 -78840276 - L1MB4 LINE L1 -12 6168 6117 1770 95 0 9 chr15 6855478 6855709 -78840045 + AluY SINE Alu 68 296 -15 280 261 23 23 chr15 6857117 6857205 -78838549 + MER5C DNA MER1_type 37 124 -200 1424 130 189 53 chr15 6857667 6857911 -78837843 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 6857911 6857934 -78837820 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2127 111 3 7 chr15 6857938 6858226 -78837528 - AluSp SINE Alu -26 287 1 1424 130 189 53 chr15 6858226 6858298 -78837456 + MER47A DNA MER2_type 212 366 0 2263 73 38 0 chr15 6859098 6859387 -78836367 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 6859391 6859446 -78836308 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 6859972 6860028 -78835726 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 6860305 6860333 -78835421 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 6860590 6860635 -78835119 + AT_rich Low_complexity Low_complexity 1 45 0 1399 160 12 78 chr15 6862074 6862288 -78833466 - AluJo SINE Alu -2 310 124 1864 114 28 41 chr15 6862288 6862578 -78833176 + AluSp SINE Alu 2 287 -26 1399 160 12 78 chr15 6862578 6862695 -78833059 - AluJo SINE Alu -188 124 1 1760 135 14 17 chr15 6862729 6863026 -78832728 + AluSp SINE Alu 5 300 -13 550 196 9 0 chr15 6863026 6863138 -78832616 - AluJb SINE Alu -198 114 2 1697 139 23 16 chr15 6863173 6863476 -78832278 + AluSp SINE Alu 5 309 -4 284 136 0 0 chr15 6863476 6863520 -78832234 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 6863511 6863950 -78831804 + MLT1D LTR MaLR 44 505 0 1767 194 28 33 chr15 6864489 6864885 -78830869 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 6864885 6864932 -78830822 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 6864932 6865075 -78830679 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 6865558 6865866 -78829888 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 6868897 6868930 -78826824 + AT_rich Low_complexity Low_complexity 1 33 0 517 204 138 13 chr15 6868973 6869125 -78826629 - MIR SINE MIR -64 198 28 2038 109 13 33 chr15 6869278 6869581 -78826173 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 6870745 6870786 -78824968 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 204 0 0 chr15 6870798 6870847 -78824907 + MIR SINE MIR 184 232 -30 933 249 127 33 chr15 6870877 6871391 -78824363 - HAL1 LINE L1 -877 1630 1069 592 236 126 95 chr15 6871392 6871867 -78823887 - MLT1H1 LTR MaLR 0 555 66 242 239 127 25 chr15 6871934 6872131 -78823623 - HAL1 LINE L1 -1437 1070 854 2264 112 3 3 chr15 6872158 6872461 -78823293 - AluSp SINE Alu -10 303 1 1876 138 10 31 chr15 6872525 6872853 -78822901 + AluJo SINE Alu 1 322 0 346 286 93 65 chr15 6873127 6873417 -78822337 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 6873800 6874017 -78821737 + MER20 DNA MER1_type 1 219 0 2413 63 0 20 chr15 6874147 6874448 -78821306 + AluY SINE Alu 5 299 -12 270 0 0 0 chr15 6874886 6874916 -78820838 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 6874916 6875195 -78820559 - AluY SINE Alu -27 284 1 388 251 99 41 chr15 6877853 6877876 -78817878 + MIR SINE MIR 12 32 -230 2215 99 7 3 chr15 6877876 6878169 -78817585 + AluY SINE Alu 1 294 -17 388 251 99 41 chr15 6878169 6878316 -78817438 + MIR SINE MIR 32 192 -70 271 343 131 0 chr15 6879246 6879383 -78816371 + MIR3 SINE MIR 31 185 -23 323 233 78 26 chr15 6879402 6879518 -78816236 + L2 LINE L2 3146 3267 -5 236 173 58 0 chr15 6880854 6880906 -78814848 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 6880909 6880945 -78814809 + (TG)n Simple_repeat Simple_repeat 2 37 0 482 255 160 25 chr15 6881141 6881341 -78814413 + MIR SINE MIR 26 252 -10 1916 145 0 26 chr15 6883423 6883726 -78812028 + AluSx SINE Alu 3 297 -15 252 238 197 8 chr15 6883743 6883865 -78811889 + MIR SINE MIR 48 192 -70 897 175 0 18 chr15 6884572 6884738 -78811016 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 6885863 6885898 -78809856 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 293 215 21 21 chr15 6887978 6888071 -78807683 + L1M4c LINE L1 1132 1224 -5160 * 1773 234 64 32 chr15 6888070 6889187 -78806567 + L1M4c LINE L1 1540 2782 -3600 1035 266 109 39 chr15 6889187 6889606 -78806148 - MLT1C LTR MaLR 0 467 2 2171 133 3 46 chr15 6889870 6890238 -78805516 + MSTA LTR MaLR 1 352 -76 2688 146 37 2 chr15 6890338 6890769 -78804985 - MER7C DNA MER2_type -156 446 1 1136 284 61 50 chr15 6890787 6891245 -78804509 - MER21B LTR ERV1 -396 467 5 360 241 288 4 chr15 6891253 6891489 -78804265 - HAL1 LINE L1 -695 1812 1510 390 213 16 39 chr15 6891590 6891717 -78804037 + CT-rich Low_complexity Low_complexity 3 126 0 703 254 130 52 chr15 6891726 6891856 -78803898 - HAL1 LINE L1 -1542 965 846 337 39 19 19 chr15 6891856 6891908 -78803846 + (TG)n Simple_repeat Simple_repeat 1 52 0 703 254 130 52 chr15 6891908 6892139 -78803615 - HAL1 LINE L1 -1661 846 576 2938 228 52 47 chr15 6892355 6893161 -78802593 + L1M4 LINE L1 5 814 -5728 333 220 11 33 chr15 6893161 6893252 -78802502 + L1M4 LINE L1 737 825 -5717 295 218 23 11 chr15 6893227 6893314 -78802440 + L1M4 LINE L1 727 814 -5728 * 296 164 16 0 chr15 6893312 6893373 -78802381 + L1M4 LINE L1 735 796 -5746 3116 249 64 45 chr15 6893379 6893670 -78802084 + L1M4 LINE L1 727 1011 -5814 2356 88 0 3 chr15 6893670 6893965 -78801789 - AluSc SINE Alu -15 294 1 3116 249 64 45 chr15 6893965 6895417 -78800337 + L1M4 LINE L1 1011 2647 -4178 1472 213 11 0 chr15 6895417 6895690 -78800064 + AluJo SINE Alu 3 278 -34 3116 249 64 45 chr15 6895690 6895952 -78799802 + L1M4 LINE L1 2647 2903 -3922 1226 105 0 0 chr15 6895968 6896130 -78799624 + AluSg/x SINE Alu 143 304 -8 848 227 35 11 chr15 6896131 6896394 -78799360 + L1M4 LINE L1 2871 3135 -3509 469 151 140 26 chr15 6896535 6896711 -78799043 + L1M4 LINE L1 5177 5370 -808 1705 193 0 3 chr15 6896750 6897061 -78798693 + AluJo SINE Alu 1 310 -2 235 218 18 0 chr15 6897063 6897118 -78798636 + L1MB7 LINE L1 6108 6163 -21 22 0 0 0 chr15 6897327 6897349 -78798405 + AT_rich Low_complexity Low_complexity 1 22 0 593 228 54 58 chr15 6897461 6897595 -78798159 - L1ME1 LINE L1 -5 6397 6263 180 0 0 0 chr15 6897595 6897615 -78798139 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 593 228 54 58 chr15 6897615 6897704 -78798050 - L1ME1 LINE L1 -139 6263 6175 * 2185 249 80 26 chr15 6897699 6898061 -78797693 - L1ME1 LINE L1 -816 5566 5225 2585 74 0 3 chr15 6898061 6898373 -78797381 - AluY SINE Alu 0 311 1 2185 249 80 26 chr15 6898373 6898881 -78796873 - L1ME1 LINE L1 -1157 5225 4649 2294 144 76 13 chr15 6898883 6899280 -78796474 + MSTB LTR MaLR 3 424 -2 9541 176 11 18 chr15 6899282 6900943 -78794811 + MSTB-int LTR MaLR 3 1651 0 2401 180 65 0 chr15 6900943 6901343 -78794411 + MSTB LTR MaLR 1 426 0 202 239 15 30 chr15 6901348 6901415 -78794339 + CT-rich Low_complexity Low_complexity 4 69 0 180 111 0 0 chr15 6901423 6901450 -78794304 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1013 212 14 29 chr15 6901462 6901740 -78794014 - L1ME1 LINE L1 -1755 4627 4354 474 320 32 20 chr15 6902269 6902516 -78793238 - L1M4 LINE L1 -6269 273 24 345 239 122 22 chr15 6902555 6902735 -78793019 + L1MEc LINE L1 1774 1971 -4425 22 35 0 0 chr15 6902783 6902812 -78792942 + AT_rich Low_complexity Low_complexity 1 29 0 372 130 0 0 chr15 6903172 6903241 -78792513 + (TC)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr15 6903242 6903271 -78792483 + (TA)n Simple_repeat Simple_repeat 1 29 0 241 185 62 0 chr15 6903273 6903354 -78792400 - L1ME1 LINE L1 -5504 880 795 271 243 48 0 chr15 6903357 6903460 -78792294 + (TA)n Simple_repeat Simple_repeat 1 108 0 1033 252 82 18 chr15 6903461 6903790 -78791964 - MLT2D LTR ERVL -64 350 1 6110 168 45 37 chr15 6903792 6904018 -78791736 - ERVL-D LTR ERVL -11 5753 5530 2457 80 0 0 chr15 6904018 6904317 -78791437 + AluY SINE Alu 1 299 -12 6110 168 45 37 chr15 6904317 6904434 -78791320 - ERVL-D LTR ERVL -234 5530 5415 2281 125 0 0 chr15 6904434 6904746 -78791008 + AluSx SINE Alu 1 312 0 6110 168 45 37 chr15 6904746 6905570 -78790184 - ERVL-D LTR ERVL -349 5415 4576 4469 262 51 31 chr15 6905678 6905899 -78789855 - L1MEc LINE L1 -2033 4096 3881 2055 100 25 4 chr15 6905899 6906218 -78789536 - AluSq SINE Alu 0 325 1 4469 262 51 31 chr15 6906218 6907871 -78787883 - L1MEc LINE L1 -2248 3881 2183 6347 159 20 24 chr15 6907876 6908883 -78786871 - L1MC1 LINE L1 -1 6592 5590 2476 153 40 26 chr15 6908883 6909309 -78786445 - MSTB1 LTR MaLR 0 432 1 6347 159 20 24 chr15 6909309 6909745 -78786009 - L1MC1 LINE L1 -1003 5590 5154 13387 123 30 11 chr15 6909795 6912570 -78783184 + L1PA10 LINE L1 3373 6163 -5 3616 196 94 43 chr15 6912591 6913720 -78782034 - L1MC1 LINE L1 -3971 2435 1251 301 304 155 26 chr15 6913929 6914123 -78781631 - L1ME LINE L1 -284 5837 5619 1241 144 0 6 chr15 6914123 6914304 -78781450 + AluSx SINE Alu 1 180 -132 2028 196 41 21 chr15 6914364 6914752 -78781002 + MSTD LTR MaLR 1 396 0 2172 115 14 0 chr15 6916104 6916399 -78779355 - AluSq SINE Alu -14 299 1 399 120 22 76 chr15 6916689 6916781 -78778973 + HsTC2 DNA Tc2 1 87 -1811 276 287 66 55 chr15 6917000 6917272 -78778482 - L1MEc LINE L1 -4706 1604 1330 31 26 0 0 chr15 6917275 6917313 -78778441 + AT_rich Low_complexity Low_complexity 1 38 0 2457 73 3 0 chr15 6917358 6917660 -78778094 + AluY SINE Alu 1 303 -8 10263 204 70 18 chr15 6917702 6918414 -78777340 - L1MC3 LINE L1 -39 8164 7490 180 77 0 0 chr15 6918414 6918440 -78777314 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 10263 204 70 18 chr15 6918440 6920364 -78775390 - L1MC3 LINE L1 -713 7490 5396 3342 228 54 81 chr15 6920388 6921983 -78773771 - L1MC3 LINE L1 -4850 1195 1 902 296 103 77 chr15 6922039 6923250 -78772504 - L1MEc LINE L1 -4872 1247 5 28 29 0 0 chr15 6923732 6923767 -78771987 + AT_rich Low_complexity Low_complexity 1 35 0 317 310 16 64 chr15 6925902 6925920 -78769834 - MIR SINE MIR -26 236 219 2323 84 40 0 chr15 6925920 6926218 -78769536 - AluY SINE Alu -1 310 1 317 310 16 64 chr15 6926218 6926386 -78769368 - MIR SINE MIR -43 219 59 1763 231 45 27 chr15 6926543 6927057 -78768697 - Charlie1b DNA MER1_type 0 523 1 378 221 31 24 chr15 6927542 6927669 -78768085 - L1M4 LINE L1 -777 5369 5242 1453 194 65 26 chr15 6928572 6928923 -78766831 + MLT1A1 LTR MaLR 1 365 0 342 0 0 0 chr15 6930143 6930181 -78765573 + (CA)n Simple_repeat Simple_repeat 2 39 0 2099 225 124 37 chr15 6933053 6933393 -78762361 - Charlie2 DNA MER1_type -33 2829 2520 1978 121 0 28 chr15 6933393 6933718 -78762036 - AluSx SINE Alu 0 317 1 2099 225 124 37 chr15 6933718 6934265 -78761489 - Charlie2 DNA MER1_type -342 2520 1864 732 69 0 0 chr15 6934484 6934571 -78761183 + AluSc SINE Alu 83 169 -140 910 235 118 42 chr15 6935511 6935800 -78759954 - MER21B LTR ERV1 -62 801 491 68 42 0 0 chr15 6935800 6935896 -78759858 + AT_rich Low_complexity Low_complexity 1 96 0 382 146 126 215 chr15 6936152 6936399 -78759355 - MER21B LTR ERV1 -627 236 12 230 328 0 0 chr15 6936439 6936497 -78759257 + C-rich Low_complexity Low_complexity 4 61 0 181 264 56 56 chr15 6937241 6937313 -78758441 - MIR SINE MIR -70 138 67 1841 214 16 3 chr15 6938183 6938566 -78757188 - MLT1B LTR MaLR 0 390 3 806 183 154 6 chr15 6938937 6938969 -78756785 + AluJo SINE Alu 86 112 -200 192 77 0 0 chr15 6938969 6938995 -78756759 + (CAA)n Simple_repeat Simple_repeat 2 27 0 806 183 154 6 chr15 6938995 6939137 -78756617 + AluJo SINE Alu 112 286 -26 591 173 0 0 chr15 6939137 6939247 -78756507 + (TA)n Simple_repeat Simple_repeat 1 110 0 367 276 136 67 chr15 6939831 6940309 -78755445 - MLT1H1 LTR MaLR -8 547 37 1018 258 63 3 chr15 6942171 6942473 -78753281 - LTR16C LTR ERVL -22 469 150 2591 148 35 0 chr15 6943069 6943475 -78752279 + MSTC LTR MaLR 9 428 0 253 290 10 40 chr15 6943762 6943862 -78751892 - L2 LINE L2 -1 3271 3175 628 244 45 29 chr15 6944162 6944519 -78751235 + LTR37A LTR ERV1 26 424 -2 182 287 16 57 chr15 6944521 6944643 -78751111 - L2 LINE L2 -379 2934 2818 22 0 0 0 chr15 6944746 6944768 -78750986 + AT_rich Low_complexity Low_complexity 1 22 0 233 192 0 0 chr15 6945258 6945310 -78750444 - MIR SINE MIR -134 128 77 261 0 0 0 chr15 6945535 6945564 -78750190 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 413 263 0 0 chr15 6946767 6946862 -78748892 - MER94 DNA DNA -1 133 39 311 300 9 9 chr15 6947748 6947858 -78747896 - L1M4 LINE L1 -1160 4986 4877 25 0 0 0 chr15 6948078 6948103 -78747651 + AT_rich Low_complexity Low_complexity 1 25 0 27311 103 14 10 chr15 6949063 6953005 -78742749 - L1P LINE L1 -2180 3966 11 406 272 38 46 chr15 6953016 6953255 -78742499 + L1M4 LINE L1 3725 3961 -2185 429 276 31 69 chr15 6953737 6953998 -78741756 + L1M4 LINE L1 4578 4828 -1318 1392 153 25 8 chr15 6954131 6954366 -78741388 + L1PA16 LINE L1 5919 6157 -9 876 153 7 0 chr15 6954374 6954549 -78741205 + FRAM SINE Alu 10 185 0 30 27 0 0 chr15 6956970 6957007 -78738747 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 3 23 chr15 6957008 6957313 -78738441 - AluJo SINE Alu -11 301 3 245 320 0 13 chr15 6957937 6958012 -78737742 + CT-rich Low_complexity Low_complexity 4 77 0 1643 202 85 50 chr15 6959031 6959120 -78736634 - MER74A LTR ERVL -24 534 450 2220 100 3 3 chr15 6959120 6959409 -78736345 + AluSg SINE Alu 1 289 -21 1643 202 85 50 chr15 6959409 6959835 -78735919 - MER74A LTR ERVL -108 450 1 2367 90 0 7 chr15 6960096 6960396 -78735358 + AluY SINE Alu 1 298 -13 349 326 54 44 chr15 6961980 6962367 -78733387 + L1M4 LINE L1 2133 2523 -3623 1346 201 13 42 chr15 6962629 6962938 -78732816 + MLT1A1 LTR MaLR 1 300 -65 184 338 25 12 chr15 6963650 6963730 -78732024 - MER5A DNA MER1_type -39 150 70 7113 242 78 35 chr15 6964692 6968471 -78727283 - L1MD2 LINE L1 -29 6724 2685 185 0 40 0 chr15 6968478 6968503 -78727251 + (TA)n Simple_repeat Simple_repeat 2 27 0 1616 213 76 52 chr15 6968503 6970415 -78725339 - L1MD2 LINE L1 -4073 2467 59 841 206 44 40 chr15 6970419 6970728 -78725026 - MLT1A2 LTR MaLR -4 405 97 399 286 101 68 chr15 6971461 6971828 -78723926 + L1MEd LINE L1 292 670 -5449 2191 121 3 0 chr15 6972095 6972402 -78723352 - AluSx SINE Alu -4 308 1 392 291 127 28 chr15 6972677 6972890 -78722864 + L1MEd LINE L1 849 1082 -5037 333 252 211 0 chr15 6972901 6973024 -78722730 - MIR SINE MIR 0 262 114 762 241 91 44 chr15 6973184 6973591 -78722163 - LTR37A LTR ERV1 0 426 1 452 294 53 50 chr15 6973605 6974033 -78721721 + L1MEd LINE L1 1213 1690 -800 2330 86 0 23 chr15 6974156 6974458 -78721296 + AluSx SINE Alu 5 299 -13 2687 26 3 3 chr15 6974694 6975005 -78720749 + AluYa5 SINE Alu 1 311 0 300 242 135 68 chr15 6975161 6975546 -78720208 + L1MEd LINE L1 2194 2604 -3525 200 114 29 0 chr15 6975669 6975704 -78720050 + (TG)n Simple_repeat Simple_repeat 1 36 0 629 167 19 0 chr15 6975784 6975892 -78719862 + L1MC/D LINE L1 5599 5708 -625 519 264 121 19 chr15 6975966 6976281 -78719473 + L1MEd LINE L1 3053 3399 -2730 6342 143 21 21 chr15 6976308 6976670 -78719084 - L1MC1 LINE L1 -5 6328 5968 373 22 0 0 chr15 6976670 6976715 -78719039 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 2280 89 0 0 chr15 6976715 6976997 -78718757 - AluSx SINE Alu -1 326 1 6342 143 21 21 chr15 6976997 6977800 -78717954 - L1MC1 LINE L1 -364 5969 5161 10542 50 6 1 chr15 6977869 6979971 -78715783 - L1PA6 LINE L1 -4 6150 4047 419 179 11 42 chr15 6980107 6980202 -78715552 + MLT1A2 LTR MaLR 14 105 -269 822 237 17 23 chr15 6980210 6980383 -78715371 + MER21B LTR ERV1 12 183 -680 959 222 84 25 chr15 6980704 6980983 -78714771 - L1MB8 LINE L1 0 6178 5884 243 0 0 0 chr15 6981469 6981496 -78714258 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1387 182 28 21 chr15 6981500 6981791 -78713963 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 6981925 6981951 -78713803 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 6982873 6982895 -78712859 + AT_rich Low_complexity Low_complexity 1 22 0 411 264 91 8 chr15 6983825 6983946 -78711808 - MIR3 SINE MIR -40 168 38 1832 164 12 84 chr15 6985389 6985803 -78709951 - MLT1B LTR MaLR -4 386 3 945 199 49 29 chr15 6986156 6986402 -78709352 - MLT1A1 LTR MaLR -16 349 99 3147 211 81 39 chr15 6986443 6987210 -78708544 - MER21B LTR ERV1 -53 810 12 419 179 11 42 chr15 6987218 6987313 -78708441 - MLT1A1 LTR MaLR -269 105 14 2127 109 0 13 chr15 6988171 6988473 -78707281 - AluSg SINE Alu -12 298 1 1003 147 0 40 chr15 6989493 6989670 -78706084 + FRAM SINE Alu 1 40 0 319 309 0 0 chr15 6990882 6990966 -78704788 + MIR3 SINE MIR 73 156 -52 479 230 111 15 chr15 6991583 6991718 -78704036 + MER58A DNA MER1_type 1 148 0 225 94 62 0 chr15 6991718 6991750 -78704004 + MER58A DNA MER1_type 191 224 0 887 263 55 15 chr15 6991822 6992285 -78703469 - MER119 DNA MER1_type -1 582 5 209 200 98 14 chr15 6992302 6992371 -78703383 - MIR SINE MIR -69 139 74 204 40 0 0 chr15 6993680 6993705 -78702049 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1445 88 0 16 chr15 6994499 6994693 -78701061 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 6994963 6994998 -78700756 + (TG)n Simple_repeat Simple_repeat 1 36 0 862 301 68 37 chr15 6995549 6996141 -78699613 - L1MC4a LINE L1 -1915 6153 5544 465 332 93 18 chr15 6996734 6996960 -78698794 - L1MC4a LINE L1 -1604 4802 4560 275 317 106 22 chr15 6997003 6997363 -78698391 - L1MC4a LINE L1 -1949 4457 4068 22 0 0 0 chr15 6997660 6997682 -78698072 + AT_rich Low_complexity Low_complexity 1 22 0 312 136 34 0 chr15 6998669 6998728 -78697026 - L1MC4a LINE L1 -2980 3426 3366 1368 171 95 29 chr15 6998745 6998937 -78696817 - L1MB3 LINE L1 -1 6182 5959 2037 131 0 3 chr15 6998937 6999243 -78696511 - AluSx SINE Alu -7 305 1 1368 171 95 29 chr15 6999243 6999366 -78696388 - L1MB3 LINE L1 -224 5959 5846 2001 99 16 59 chr15 6999370 6999693 -78696061 - AluSx SINE Alu -3 309 1 548 333 45 31 chr15 6999707 6999927 -78695827 - L1MC4a LINE L1 -3044 3362 3134 633 125 0 29 chr15 6999927 7000031 -78695723 - HY3 scRNA scRNA 0 101 1 548 333 45 31 chr15 7000031 7000167 -78695587 - L1MC4a LINE L1 -3272 3134 3001 2367 223 149 19 chr15 7000437 7001148 -78694606 - MER21B LTR ERV1 -31 832 40 439 205 13 0 chr15 7001187 7001265 -78694489 - MER21B LTR ERV1 -773 90 12 2163 99 0 0 chr15 7003656 7003949 -78691805 - AluSx SINE Alu -13 299 7 1759 168 36 0 chr15 7003954 7004263 -78691491 + MER44D DNA MER2_type 18 607 -2 2090 156 33 0 chr15 7005075 7005441 -78690313 + MLT1B LTR MaLR 2 379 -11 241 270 101 11 chr15 7005642 7005731 -78690023 - MIR SINE MIR -72 136 40 1076 121 0 0 chr15 7005947 7006104 -78689650 - AluSp SINE Alu -17 296 140 2106 117 0 0 chr15 7006836 7007136 -78688618 + AluSx SINE Alu 1 300 -12 45122 33 4 5 chr15 7008109 7014270 -78681484 + L1PA3 LINE L1 7 6155 0 1620 226 41 13 chr15 7014345 7014810 -78680944 - L1MC4a LINE L1 -5264 1145 668 666 260 166 6 chr15 7014906 7015244 -78680510 - L1MC4a LINE L1 -6009 400 9 2074 205 32 42 chr15 7015732 7015881 -78679873 + MER90 LTR ERV1 6 155 -459 2397 75 0 3 chr15 7015881 7016188 -78679566 + AluY SINE Alu 1 306 -5 2074 205 32 42 chr15 7016188 7016608 -78679146 + MER90 LTR ERV1 155 610 -4 1931 112 49 3 chr15 7017372 7017658 -78678096 - AluSx SINE Alu -13 299 1 230 145 72 58 chr15 7018006 7018075 -78677679 + MER53 DNA DNA 119 188 -1 1662 213 81 29 chr15 7019352 7019832 -78675922 - MLT1D LTR MaLR 0 505 1 203 317 79 67 chr15 7020014 7020178 -78675576 - MIR SINE MIR -6 256 91 184 263 0 92 chr15 7020438 7020514 -78675240 - L3 LINE CR1 -2 1575 1507 * 385 229 35 83 chr15 7020496 7020610 -78675144 - MER5A DNA MER1_type -6 183 75 1675 139 40 7 chr15 7020610 7020926 -78674828 - AluY SINE Alu 0 326 2 385 229 35 83 chr15 7020926 7020954 -78674800 - MER5A DNA MER1_type -114 75 47 1752 118 129 26 chr15 7020997 7021337 -78674417 - THE1C LTR MaLR 0 375 1 1952 88 25 63 chr15 7023098 7023417 -78672337 + AluY SINE Alu 1 307 -4 313 265 131 29 chr15 7024317 7024562 -78671192 + L1MC4a LINE L1 970 1239 -4880 324 233 159 80 chr15 7024661 7024975 -78670779 + L1MC4a LINE L1 2887 3225 -2904 304 271 75 81 chr15 7025041 7025373 -78670381 + L1MC4a LINE L1 3609 3938 -2191 351 253 153 35 chr15 7025645 7025815 -78669939 + L1MC4a LINE L1 4221 4410 -1719 347 252 69 23 chr15 7025939 7026070 -78669684 - MLT1J1 LTR MaLR -167 279 143 1058 262 78 31 chr15 7026119 7026543 -78669211 - MLT1J1 LTR MaLR -2 444 1 348 338 45 7 chr15 7026543 7026697 -78669057 + L1MC4a LINE L1 4406 4565 -1564 7664 36 0 4 chr15 7026705 7027912 -78667842 + L1PA4 LINE L1 4951 6154 -1 748 211 79 152 chr15 7028003 7028228 -78667526 - MLT1A1 LTR MaLR 0 365 180 2189 138 76 15 chr15 7028228 7028569 -78667185 - THE1B LTR MaLR -2 362 1 748 211 79 152 chr15 7028569 7028737 -78667017 - MLT1A1 LTR MaLR -185 180 1 2307 173 38 26 chr15 7028794 7029221 -78666533 - MSTB1 LTR MaLR 0 432 1 1780 170 22 41 chr15 7029329 7029694 -78666060 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 7029702 7029737 -78666017 + AT_rich Low_complexity Low_complexity 1 35 0 763 326 110 12 chr15 7030204 7030775 -78664979 + L1MC4a LINE L1 5239 5865 -1926 307 264 8 72 chr15 7030953 7031078 -78664676 - MLT1H LTR MaLR -238 311 195 271 308 54 32 chr15 7032072 7032257 -78663497 + ERVL LTR ERVL 514 702 -5062 781 334 46 13 chr15 7032737 7033146 -78662608 + ERVL LTR ERVL 2644 3111 -2638 2138 114 0 0 chr15 7033175 7033503 -78662251 + AluSg SINE Alu 1 328 0 1200 283 114 27 chr15 7033518 7034388 -78661366 + ERVL LTR ERVL 3229 4216 -1548 486 351 101 4 chr15 7034560 7034808 -78660946 + ERVL LTR ERVL 4769 5040 -724 1683 225 46 38 chr15 7034939 7035112 -78660642 + MLT1C LTR MaLR 3 173 -294 2416 71 7 0 chr15 7035112 7035409 -78660345 + AluY SINE Alu 1 299 -12 1683 225 46 38 chr15 7035409 7035688 -78660066 + MLT1C LTR MaLR 173 459 -8 411 266 0 9 chr15 7035692 7035801 -78659953 + ERVL LTR ERVL 5172 5279 -485 5900 132 20 28 chr15 7035923 7035945 -78659809 + MER49 LTR ERV1 1 22 -901 1843 136 0 74 chr15 7035945 7036268 -78659486 + AluSx SINE Alu 1 299 -13 5900 132 20 28 chr15 7036268 7037175 -78658579 + MER49 LTR ERV1 22 923 0 576 191 18 12 chr15 7038135 7038303 -78657451 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2275 115 3 0 chr15 7039606 7039911 -78655843 - AluSq SINE Alu -5 308 3 2262 104 0 7 chr15 7039922 7040230 -78655524 - AluY SINE Alu -5 306 1 21955 195 46 6 chr15 7041526 7045695 -78650059 - ERVL LTR ERVL -788 4976 550 3304 252 53 26 chr15 7045833 7047076 -78648678 + L1MC2 LINE L1 2626 3902 -2244 2000 143 181 8 chr15 7047076 7047441 -78648313 + MSTA LTR MaLR 1 428 0 9905 132 12 85 chr15 7047443 7049145 -78646609 + MSTA-int LTR MaLR 3 1580 0 403 113 238 0 chr15 7049145 7049225 -78646529 + MSTA LTR MaLR 1 99 -329 985 145 134 0 chr15 7049227 7049406 -78646348 + MSTA LTR MaLR 226 428 0 1294 253 6 10 chr15 7049406 7049718 -78646036 + L1MC2 LINE L1 3898 4208 -1938 1402 247 118 34 chr15 7049721 7049838 -78645916 - MLT1D LTR MaLR 0 505 399 2356 151 28 13 chr15 7049838 7050228 -78645526 + MSTD LTR MaLR 1 396 0 1402 247 118 34 chr15 7050228 7050576 -78645178 - MLT1D LTR MaLR -106 399 1 865 263 23 7 chr15 7050580 7050880 -78644874 + L1MC2 LINE L1 4211 4515 -1631 1043 327 86 22 chr15 7050895 7051587 -78644167 + L1MA9 LINE L1 106 770 -5185 423 245 71 71 chr15 7051652 7051807 -78643947 + L1MA9 LINE L1 635 789 -5166 11728 197 21 28 chr15 7051808 7054122 -78641632 + L1MA9 LINE L1 2544 4851 -1349 2176 99 0 38 chr15 7054122 7054436 -78641318 + AluSp SINE Alu 1 302 -11 11728 197 21 28 chr15 7054436 7055262 -78640492 + L1MA9 LINE L1 4851 5681 -519 306 160 20 120 chr15 7055288 7055388 -78640366 - L1MC4 LINE L1 -1339 6703 6614 301 233 35 23 chr15 7055325 7055411 -78640343 + L1MC4 LINE L1 6615 6701 -1341 * 2759 163 27 17 chr15 7055428 7055951 -78639803 + L1MA9 LINE L1 5673 6200 0 2951 206 73 10 chr15 7055955 7056946 -78638808 + L1MC2 LINE L1 4980 6034 -310 2795 98 40 10 chr15 7056947 7057347 -78638407 - L1MA2 LINE L1 0 6304 5893 796 171 76 0 chr15 7057382 7057540 -78638214 + L1MC3 LINE L1 7118 7287 -498 1453 213 53 36 chr15 7057543 7057767 -78637987 + L1MC3 LINE L1 7364 7600 -185 2397 75 3 0 chr15 7057767 7058061 -78637693 + AluSp SINE Alu 1 295 -18 1453 213 53 36 chr15 7058061 7058249 -78637505 + L1MC3 LINE L1 7600 7783 -2 240 244 134 12 chr15 7058295 7058377 -78637377 - LTR67 LTR ERVL -367 190 99 1010 230 8 28 chr15 7058779 7059027 -78636727 - LTR53 LTR ERVL -88 431 189 293 266 25 0 chr15 7060916 7060995 -78634759 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 189 215 25 13 chr15 7061007 7061086 -78634668 + (TA)n Simple_repeat Simple_repeat 2 81 0 2649 29 7 3 chr15 7061123 7061430 -78634324 - AluY SINE Alu -3 308 1 212 359 26 0 chr15 7063486 7063564 -78632190 - L2 LINE L2 -553 2761 2682 2508 198 29 2 chr15 7064235 7064711 -78631043 - L1MB3 LINE L1 -2 6181 5693 397 343 18 24 chr15 7064897 7065066 -78630688 + MIR SINE MIR 88 255 -7 1527 150 108 119 chr15 7065404 7065683 -78630071 + MLT1C LTR MaLR 1 274 -193 2823 148 14 5 chr15 7065683 7066102 -78629652 - MSTB LTR MaLR 0 426 4 1527 150 108 119 chr15 7066102 7066294 -78629460 + MLT1C LTR MaLR 274 467 0 2120 121 3 7 chr15 7067267 7067565 -78628189 - AluSx SINE Alu -13 299 3 2554 44 0 0 chr15 7067911 7068207 -78627547 - AluY SINE Alu -14 297 2 24 32 0 0 chr15 7068442 7068473 -78627281 + AT_rich Low_complexity Low_complexity 1 31 0 7476 143 26 13 chr15 7069090 7070303 -78625451 - Tigger3b DNA MER2_type -3 1228 1 2208 114 13 0 chr15 7070523 7070951 -78624803 + AluSx SINE Alu 1 432 0 1096 47 0 0 chr15 7070986 7071113 -78624641 - L1PA2 LINE L1 -2 6153 6027 2185 78 0 31 chr15 7071397 7071718 -78624036 - AluY SINE Alu 0 311 1 2613 42 0 3 chr15 7072016 7072328 -78623426 - AluY SINE Alu 0 311 1 240 218 26 39 chr15 7072558 7072636 -78623118 + MIR SINE MIR 168 244 -18 618 300 91 72 chr15 7072752 7073513 -78622241 - L1MC4 LINE L1 -136 7906 7132 4521 210 63 38 chr15 7073791 7075372 -78620382 - L1MD2 LINE L1 -14 6345 4741 2601 122 29 67 chr15 7075404 7075854 -78619900 + Tigger2a DNA MER2_type 1 433 -1 1583 181 59 25 chr15 7075861 7076182 -78619572 + MER2 DNA MER2_type 1 332 -13 349 181 194 0 chr15 7076188 7076260 -78619494 + MER21B LTR ERV1 11 96 -767 3110 231 46 10 chr15 7076260 7077159 -78618595 - L1MD2 LINE L1 -2200 3946 3016 1674 251 117 27 chr15 7077132 7078451 -78617303 - L1MEc LINE L1 -2525 3690 1747 * 304 205 111 0 chr15 7078483 7078600 -78617154 - L1MEc LINE L1 -4636 1620 1450 2364 95 3 13 chr15 7078604 7078919 -78616835 - AluSp SINE Alu -1 312 1 1025 145 0 7 chr15 7078921 7079073 -78616681 - FRAM SINE Alu -5 171 21 692 197 8 0 chr15 7079313 7079440 -78616314 - FLAM_C SINE Alu -3 130 3 846 270 48 28 chr15 7079503 7079896 -78615858 - L1MEc LINE L1 -5638 758 358 230 226 10 78 chr15 7079942 7080044 -78615710 - L1MEc LINE L1 -6013 383 289 3017 130 35 0 chr15 7080095 7080604 -78615150 - Tigger1 DNA MER2_type -420 1998 1472 24 32 0 0 chr15 7080991 7081022 -78614732 + AT_rich Low_complexity Low_complexity 1 31 0 1132 257 117 45 chr15 7081933 7082559 -78613195 + HAL1 LINE L1 1813 2483 -24 2109 136 0 13 chr15 7082729 7083045 -78612709 - AluSx SINE Alu 0 312 1 270 0 0 0 chr15 7084596 7084626 -78611128 + (T)n Simple_repeat Simple_repeat 1 30 0 239 238 113 96 chr15 7084937 7085219 -78610535 + L1MC5 LINE L1 6695 6981 -980 1924 141 0 0 chr15 7085298 7085575 -78610179 + AluSx SINE Alu 32 308 -4 619 277 104 6 chr15 7087356 7087709 -78608045 + MER57A LTR ERV1 41 403 0 21 0 0 0 chr15 7087977 7087998 -78607756 + AT_rich Low_complexity Low_complexity 1 21 0 417 299 0 0 chr15 7088303 7088450 -78607304 + L1ME3 LINE L1 5043 5189 -957 2545 62 0 0 chr15 7088568 7088873 -78606881 - AluY SINE Alu -6 305 1 1310 196 103 56 chr15 7088876 7089254 -78606500 + MSTD LTR MaLR 1 396 0 1618 246 53 45 chr15 7089266 7089999 -78605755 + L1ME3 LINE L1 5255 5993 -169 218 321 55 28 chr15 7090742 7090851 -78604903 - L3 LINE CR1 -696 881 770 1839 155 12 75 chr15 7091547 7091827 -78603927 - L1MA4 LINE L1 -4 6296 6051 2350 92 0 0 chr15 7091827 7092122 -78603632 - AluSc SINE Alu -14 295 1 1839 155 12 75 chr15 7092122 7092267 -78603487 - L1MA4 LINE L1 -249 6051 5898 1271 142 11 0 chr15 7092594 7092784 -78602970 + AluSx SINE Alu 1 192 -120 41625 39 5 1 chr15 7092784 7098887 -78596867 + L1PA3 LINE L1 17 6139 -16 888 157 0 0 chr15 7098895 7099029 -78596725 + AluSg/x SINE Alu 162 295 -17 531 282 85 56 chr15 7099270 7099683 -78596071 + L1MD3 LINE L1 790 1187 -5018 907 259 5 0 chr15 7099689 7099901 -78595853 - MER20 DNA MER1_type -6 213 1 2237 110 0 0 chr15 7099995 7100286 -78595468 + AluSg SINE Alu 1 291 -19 497 279 65 30 chr15 7100288 7101228 -78594526 + L1MD3 LINE L1 1258 2264 -4132 5805 185 22 16 chr15 7101716 7102969 -78592785 + L1MC1 LINE L1 24 1284 -5142 2027 141 9 15 chr15 7102969 7103310 -78592444 + MER1B DNA MER1_type 1 339 0 7656 209 42 77 chr15 7103314 7105873 -78589881 + L1MC1 LINE L1 1281 3927 -2686 855 154 0 0 chr15 7105873 7106003 -78589751 + AluSq/x SINE Alu 9 138 -174 7656 209 42 77 chr15 7106003 7108758 -78586996 + L1MC1 LINE L1 3927 6611 -2 4543 233 56 82 chr15 7109069 7111444 -78584310 - L1M4 LINE L1 -1095 5051 2739 408 287 0 0 chr15 7111529 7111679 -78584075 + L1MD3 LINE L1 4288 4437 -1778 2606 234 30 74 chr15 7111733 7112318 -78583436 - L1MDb LINE L1 -4918 1488 879 189 0 0 0 chr15 7112318 7112339 -78583415 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2173 94 4 0 chr15 7112341 7112617 -78583137 - AluSx SINE Alu -26 286 10 2606 234 30 74 chr15 7112617 7113041 -78582713 - L1MDb LINE L1 -5528 878 536 356 245 20 0 chr15 7113027 7113125 -78582629 + L1MD3 LINE L1 5633 5732 -501 * 687 237 46 92 chr15 7113140 7113777 -78581977 + L1MD3 LINE L1 5814 6479 -1375 1461 163 87 24 chr15 7113777 7114066 -78581688 + AluJo SINE Alu 1 307 -5 687 237 46 92 chr15 7114066 7114401 -78581353 + L1MD3 LINE L1 6479 6828 -1026 2773 3 0 0 chr15 7114401 7114699 -78581055 - AluYa5 SINE Alu -13 298 1 687 237 46 92 chr15 7114699 7114952 -78580802 + L1MD3 LINE L1 6828 6839 -1015 2626 63 8 11 chr15 7114952 7115318 -78580436 + L1PA8 LINE L1 5805 6169 -3 687 237 46 92 chr15 7115318 7115620 -78580134 + L1MD3 LINE L1 6839 7153 -701 2928 152 45 7 chr15 7115629 7116187 -78579567 + L1MA8 LINE L1 5708 6286 -5 2471 266 44 15 chr15 7116202 7117989 -78577765 + L1MEc LINE L1 1053 3052 -3374 262 326 86 31 chr15 7117985 7118335 -78577419 + L1MC5 LINE L1 7138 7506 -455 * 1449 135 4 13 chr15 7118450 7118680 -78577074 + AluSg/x SINE Alu 85 312 0 194 362 40 7 chr15 7118830 7118979 -78576775 + L2 LINE L2 1480 1633 -1681 1032 300 71 44 chr15 7118994 7119917 -78575837 + L2 LINE L2 2368 3313 0 207 176 0 0 chr15 7120558 7120592 -78575162 + GA-rich Low_complexity Low_complexity 3 36 0 769 98 22 44 chr15 7120592 7120775 -78574979 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2444 59 10 7 chr15 7121800 7122107 -78573647 - AluY SINE Alu -3 308 1 194 238 38 100 chr15 7123398 7123478 -78572276 - MIR SINE MIR -111 151 77 591 257 11 29 chr15 7123774 7123949 -78571805 + MER5B DNA MER1_type 2 173 -5 287 256 88 40 chr15 7123981 7124106 -78571648 + MER5B DNA MER1_type 17 147 -31 230 98 24 0 chr15 7124224 7124265 -78571489 + MLT1K LTR MaLR 524 565 -23 411 226 11 0 chr15 7124275 7124368 -78571386 - MER81 DNA DNA -5 109 16 2510 66 0 0 chr15 7124498 7124800 -78570954 - AluY SINE Alu -9 302 1 233 328 161 10 chr15 7125611 7125803 -78569951 + MIR SINE MIR 36 256 -6 2034 103 38 14 chr15 7126293 7126583 -78569171 + AluSx SINE Alu 1 297 -15 361 214 0 36 chr15 7126657 7126797 -78568957 + CT-rich Low_complexity Low_complexity 4 138 0 277 322 85 22 chr15 7127082 7127548 -78568206 - L1MC/D LINE L1 -429 5733 5257 311 339 90 44 chr15 7127610 7128065 -78567689 - L1MC/D LINE L1 -989 5157 4682 624 263 112 10 chr15 7128502 7128814 -78566940 + HAL1 LINE L1 1007 1350 -1157 321 306 99 46 chr15 7128939 7129263 -78566491 + HAL1 LINE L1 1532 1872 -635 1345 146 26 15 chr15 7129437 7129705 -78566049 + L1MA4 LINE L1 6027 6297 -3 308 267 39 36 chr15 7129706 7130048 -78565706 + L1M4 LINE L1 3386 3723 -2423 424 300 58 27 chr15 7130317 7130540 -78565214 + L1M4 LINE L1 4231 4460 -1686 523 183 16 16 chr15 7130567 7130693 -78565061 - L1MD1 LINE L1 0 6242 6117 3120 178 19 17 chr15 7130694 7131336 -78564418 - L1MD2 LINE L1 -183 6176 5534 618 135 0 0 chr15 7131659 7131755 -78563999 - MSTB LTR MaLR 0 426 331 291 323 13 77 chr15 7133283 7133438 -78562316 + MIR3 SINE MIR 1 145 -63 465 175 58 10 chr15 7133500 7133603 -78562151 - MIR SINE MIR -70 192 85 403 276 125 117 chr15 7135958 7136363 -78559391 + L1M2 LINE L1 527 897 -5952 231 36 0 0 chr15 7136363 7136391 -78559363 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 403 276 125 117 chr15 7136391 7136723 -78559031 + L1M2 LINE L1 897 1225 -5624 263 378 27 0 chr15 7138239 7138350 -78557404 + MIR SINE MIR 33 146 -62 249 57 0 0 chr15 7138423 7138458 -78557296 + (A)n Simple_repeat Simple_repeat 1 35 0 278 309 65 30 chr15 7138569 7138737 -78557017 + L1MEd LINE L1 283 456 -5663 2038 117 3 0 chr15 7139058 7139378 -78556376 + AluSx SINE Alu 1 321 0 306 244 49 0 chr15 7139416 7139498 -78556256 - MLT1J2 LTR MaLR -11 439 354 1763 266 85 9 chr15 7139662 7140542 -78555212 - L1M4 LINE L1 -2345 3801 2855 1906 262 105 41 chr15 7140585 7141990 -78553764 - L1ME LINE L1 -586 5972 4438 1985 178 58 9 chr15 7141990 7142435 -78553319 - MLT1C LTR MaLR 0 467 1 1906 262 105 41 chr15 7142435 7142678 -78553076 - L1ME LINE L1 -2120 4438 4212 422 265 42 52 chr15 7143282 7143569 -78552185 - L1ME LINE L1 -2361 4179 3896 304 259 112 9 chr15 7143636 7143752 -78552002 - L1ME LINE L1 -5326 1214 1087 256 265 117 12 chr15 7143877 7144039 -78551715 - L1ME LINE L1 -5448 1095 917 431 318 73 67 chr15 7144549 7144876 -78550878 - L1ME LINE L1 -6190 350 22 1907 138 10 3 chr15 7144896 7145193 -78550561 - AluSx SINE Alu -13 299 1 320 239 58 71 chr15 7145461 7145616 -78550138 - L1ME3 LINE L1 -47 6115 5963 573 247 101 86 chr15 7145761 7145971 -78549783 - L1MC5 LINE L1 -522 7439 7234 2302 113 3 0 chr15 7145971 7146273 -78549481 - AluSq SINE Alu -10 303 1 573 247 101 86 chr15 7146273 7146527 -78549227 - L1MC5 LINE L1 -727 7234 6968 436 280 127 34 chr15 7146683 7146951 -78548803 + LTR16B LTR ERVL 172 464 0 539 217 14 140 chr15 7146958 7147244 -78548510 - L1MC5 LINE L1 -1002 6959 6710 233 243 73 22 chr15 7147569 7147705 -78548049 - HAL1b LINE L1 -556 792 650 234 286 94 28 chr15 7147733 7147946 -78547808 - HAL1b LINE L1 -749 599 373 2604 65 0 0 chr15 7148355 7148663 -78547091 - AluY SINE Alu -3 308 1 1561 264 130 14 chr15 7148966 7149558 -78546196 + MLT2F LTR ERVL 1 661 -2 1790 169 41 39 chr15 7149916 7150465 -78545289 - MLT2A2 LTR ERVL 0 554 1 684 265 132 71 chr15 7150467 7150792 -78544962 - MER45C DNA AcHobo -2 951 607 661 268 96 18 chr15 7150763 7150983 -78544771 - MER45C DNA AcHobo -671 282 46 * 618 324 101 16 chr15 7151273 7151707 -78544047 - HAL1b LINE L1 -817 1598 72 919 202 163 28 chr15 7151998 7152280 -78543474 - L1MDa LINE L1 -6194 346 27 304 312 83 38 chr15 7153035 7153192 -78542562 - L1MC4a LINE L1 -401 7407 7244 412 220 85 14 chr15 7153213 7153354 -78542400 - L1MC5 LINE L1 -735 7226 7076 548 266 152 47 chr15 7153402 7153831 -78541923 + LTR33 LTR ERVL 34 507 -14 3189 161 22 20 chr15 7153859 7154499 -78541255 - L1MA4 LINE L1 0 6300 5660 2222 118 0 0 chr15 7154500 7154804 -78540950 - AluSc SINE Alu -5 304 1 226 338 61 9 chr15 7154945 7155158 -78540596 - L1MEd LINE L1 -5285 834 611 516 184 10 0 chr15 7155374 7155472 -78540282 - AluJ/FLAM SINE Alu -213 99 1 279 0 0 0 chr15 7155663 7155694 -78540060 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 269 37 15 chr15 7155820 7155954 -78539800 - L1M4 LINE L1 -1040 5106 4970 577 247 60 32 chr15 7155983 7156234 -78539520 - L1MC5 LINE L1 -1093 6868 6611 983 234 82 30 chr15 7156568 7156932 -78538822 - L1MC5 LINE L1 -2036 5772 5390 345 164 0 0 chr15 7156933 7156994 -78538760 + HERVL LTR ERVL 516 576 -5078 12657 194 43 45 chr15 7156996 7159908 -78535846 + HERVL LTR ERVL 1299 4204 -1450 820 159 7 0 chr15 7159909 7160047 -78535707 + HERVL LTR ERVL 4362 4500 -1264 299 169 323 40 chr15 7160404 7160528 -78535226 + L1M4 LINE L1 4497 4655 -1491 238 215 41 33 chr15 7160618 7160739 -78535015 + L1M LINE L1 5284 5405 -757 505 299 59 21 chr15 7161099 7161710 -78534044 + L1M4 LINE L1 2855 3488 -2658 297 340 7 0 chr15 7162151 7162295 -78533459 + L1M4 LINE L1 4015 4159 -1987 8458 28 4 0 chr15 7162310 7163373 -78532381 - L1P LINE L1 -798 5348 4282 1512 33 0 0 chr15 7163373 7163552 -78532202 + L1PA4 LINE L1 5976 6155 0 327 264 35 62 chr15 7163591 7163735 -78532019 + L1M4 LINE L1 4219 4358 -1788 3356 191 50 14 chr15 7163738 7164825 -78530929 - L1MCb LINE L1 -4516 2124 825 636 222 5 97 chr15 7164823 7165030 -78530724 - L1MCb LINE L1 -6024 540 353 * 4598 221 50 28 chr15 7165035 7166589 -78529165 + L1 LINE L1 2257 3844 -2302 4646 181 35 2 chr15 7166689 7167705 -78528049 + L1 LINE L1 4105 5154 -992 303 238 0 0 chr15 7167706 7167790 -78527964 - L1M4 LINE L1 -2663 3483 3400 1434 177 76 12 chr15 7167790 7168118 -78527636 - MER92B LTR ERV1 -228 408 60 2302 189 13 13 chr15 7168118 7168590 -78527164 - L1PA16 LINE L1 -1 6165 5694 2276 181 21 210 chr15 7168590 7169087 -78526667 + L1 LINE L1 3448 3883 -2263 1258 185 14 0 chr15 7169087 7169298 -78526456 + AluJo SINE Alu 84 297 -15 2276 181 21 210 chr15 7169298 7169668 -78526086 + L1 LINE L1 3883 4321 -1825 348 175 16 0 chr15 7169673 7169736 -78526018 - MER92B LTR ERV1 -570 66 3 344 294 50 1 chr15 7169759 7169901 -78525853 + L1 LINE L1 4873 5023 -1123 291 264 0 0 chr15 7169903 7169975 -78525779 + L1MEd LINE L1 11 82 -6037 1296 175 30 17 chr15 7170031 7170265 -78525489 - MER8 DNA MER2_type -1 238 2 2496 53 0 31 chr15 7170630 7170948 -78524806 - AluY SINE Alu -3 308 1 4205 115 10 30 chr15 7170970 7171647 -78524107 - L1PA16 LINE L1 -9 6157 5494 2650 175 15 0 chr15 7171660 7172208 -78523546 - L1PA16 LINE L1 -743 5403 4848 923 237 124 25 chr15 7172223 7172699 -78523055 - L1MEc LINE L1 -2680 3964 3442 596 246 73 51 chr15 7172693 7173223 -78522531 - L1MEc LINE L1 -3792 2852 2362 * 865 211 74 0 chr15 7173509 7173751 -78522003 - L1MEc LINE L1 -4856 1790 1531 1309 245 64 18 chr15 7173775 7174290 -78521464 - L1MEc LINE L1 -5085 1457 919 864 237 129 47 chr15 7174587 7174950 -78520804 - MSTD LTR MaLR -2 394 2 26 50 0 0 chr15 7175011 7175051 -78520703 + AT_rich Low_complexity Low_complexity 1 40 0 205 276 92 61 chr15 7176016 7176114 -78519640 - MIR SINE MIR -146 116 16 183 321 0 0 chr15 7176404 7176460 -78519294 + MIR3 SINE MIR 112 167 -41 2946 139 79 18 chr15 7177451 7178019 -78517735 + LTR26 LTR ERV1 1 603 0 39 0 0 0 chr15 7178857 7178896 -78516858 + GC_rich Low_complexity Low_complexity 1 39 0 262 231 19 0 chr15 7179026 7179078 -78516676 - MER31B LTR ERV1 -395 71 19 418 286 56 56 chr15 7179083 7179261 -78516493 + LTR16A1 LTR ERVL 280 457 0 250 270 70 20 chr15 7179502 7179602 -78516152 + ERVL LTR ERVL 2477 2581 -3183 640 195 70 0 chr15 7179603 7179731 -78516023 - L1MC1 LINE L1 0 6333 6197 * 1286 164 36 49 chr15 7179729 7180034 -78515720 - L1MDa LINE L1 -4249 2291 1991 2120 194 48 22 chr15 7180035 7180397 -78515357 + MSTB LTR MaLR 1 377 -49 1896 121 90 36 chr15 7180397 7180753 -78515001 - THE1C LTR MaLR 0 375 1 2120 194 48 22 chr15 7180753 7180803 -78514951 + MSTB LTR MaLR 377 424 -2 9423 163 22 18 chr15 7180803 7181781 -78513973 + MSTB-int LTR MaLR 1 992 -659 2001 136 10 13 chr15 7181781 7182083 -78513671 + AluSg SINE Alu 1 301 -9 9423 163 22 18 chr15 7182083 7182747 -78513007 + MSTB-int LTR MaLR 992 1651 0 2336 151 64 10 chr15 7182747 7183151 -78512603 + MSTB LTR MaLR 1 426 0 6401 225 84 44 chr15 7183152 7183516 -78512238 - L1MDa LINE L1 -4547 1993 1645 2255 169 46 7 chr15 7183516 7183931 -78511823 + MSTB1 LTR MaLR 2 432 0 6401 225 84 44 chr15 7183931 7184356 -78511398 - L1MDa LINE L1 -4895 1645 1238 2256 117 0 3 chr15 7184356 7184654 -78511100 - AluSx SINE Alu -15 297 1 6401 225 84 44 chr15 7184654 7185528 -78510226 - L1MDa LINE L1 -5302 1238 242 195 100 0 0 chr15 7185528 7185558 -78510196 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6401 225 84 44 chr15 7185558 7185795 -78509959 - L1MDa LINE L1 -6298 242 16 299 140 0 0 chr15 7186187 7186237 -78509517 - MLT2B1 LTR ERVL -2 518 469 901 250 5 20 chr15 7186304 7186500 -78509254 - MLT2B1 LTR ERVL -63 457 265 1462 287 81 20 chr15 7186641 7187763 -78507991 + L1ME3A LINE L1 4930 6166 -2 270 0 0 0 chr15 7188130 7188160 -78507594 + (TTG)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr15 7188233 7188285 -78507469 + AT_rich Low_complexity Low_complexity 1 52 0 1031 301 106 21 chr15 7188536 7189036 -78506718 + MLT1G1 LTR MaLR 1 595 0 2179 242 73 9 chr15 7190296 7190460 -78505294 + L1MDa LINE L1 2333 2485 -4055 471 17 0 0 chr15 7190460 7190518 -78505236 + L1PA4 LINE L1 6095 6152 -3 2179 242 73 9 chr15 7190518 7191324 -78504430 + L1MDa LINE L1 2485 3374 -3166 * 2209 230 67 73 chr15 7191317 7191564 -78504190 + L1MDa LINE L1 36 283 -6257 189 0 0 0 chr15 7191564 7191585 -78504169 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2209 230 67 73 chr15 7191585 7192262 -78503492 + L1MDa LINE L1 283 1204 -5336 1809 222 93 39 chr15 7192279 7192734 -78503020 + L1MDa LINE L1 3646 4154 -2386 2570 57 0 0 chr15 7192734 7193033 -78502721 + AluY SINE Alu 1 299 -12 1809 222 93 39 chr15 7193033 7193274 -78502480 + L1MDa LINE L1 4154 4380 -2160 207 363 19 25 chr15 7193319 7193476 -78502278 - MIR SINE MIR -73 189 34 200 132 0 53 chr15 7194322 7194360 -78501394 + L2 LINE L2 3262 3297 -16 1396 166 29 4 chr15 7194372 7194613 -78501141 - MLT1A1 LTR MaLR -1 364 118 265 151 57 25 chr15 7198757 7198916 -78496838 + (CTGTG)n Simple_repeat Simple_repeat 1 164 0 191 36 36 0 chr15 7201527 7201555 -78494199 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2212 88 7 29 chr15 7204443 7204749 -78491005 - AluSx SINE Alu -13 299 1 2385 74 0 10 chr15 7205141 7205438 -78490316 + AluY SINE Alu 1 294 -17 1560 142 40 4 chr15 7205551 7205804 -78489950 + MSTB1 LTR MaLR 167 428 -4 1896 192 16 0 chr15 7205815 7206228 -78489526 - MLT2B1 LTR ERVL -50 465 1 736 193 66 6 chr15 7207559 7207740 -78488014 - L1MD3 LINE L1 -14 7981 7790 180 0 0 0 chr15 7207968 7207988 -78487766 + (TG)n Simple_repeat Simple_repeat 2 21 0 1310 255 35 19 chr15 7209094 7209521 -78486233 + L1MC4a LINE L1 5508 5941 -1867 208 281 152 22 chr15 7209736 7209960 -78485794 + L2 LINE L2 2804 3056 -257 1527 210 28 62 chr15 7210536 7210936 -78484818 - MLT1B LTR MaLR -4 386 1 1799 233 89 100 chr15 7210937 7211820 -78483934 - MLT1B-int LTR MaLR -1 1370 497 2120 121 121 26 chr15 7211820 7212112 -78483642 - Tigger1 DNA MER2_type 0 2418 2079 2233 110 7 3 chr15 7212112 7212420 -78483334 - AluSg SINE Alu 0 310 2 2120 121 121 26 chr15 7212420 7212514 -78483240 - Tigger1 DNA MER2_type -339 2079 1995 2146 141 0 6 chr15 7213036 7213348 -78482406 - AluSg SINE Alu 0 310 1 484 273 18 0 chr15 7213589 7213699 -78482055 - MER81 DNA DNA 0 114 3 207 0 0 0 chr15 7213877 7213900 -78481854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3609 76 41 6 chr15 7214464 7214948 -78480806 - MER41A LTR ERV1 -53 501 1 530 267 40 65 chr15 7216043 7216290 -78479464 + MER46C DNA MER2_type 2 242 -96 1742 52 0 19 chr15 7217382 7217594 -78478160 - AluY SINE Alu -103 208 1 435 232 71 54 chr15 7217600 7217824 -78477930 + L1MC5 LINE L1 7685 7912 -49 407 272 44 0 chr15 7219169 7219305 -78476449 - Charlie1 DNA MER1_type 0 2761 2620 * 559 207 112 95 chr15 7219287 7219519 -78476235 - Charlie1 DNA MER1_type -2521 240 5 317 237 85 25 chr15 7219803 7219921 -78475833 - MLT1I LTR MaLR -244 165 41 2402 75 7 0 chr15 7219928 7220220 -78475534 - AluY SINE Alu -9 302 9 1914 124 71 0 chr15 7220578 7220860 -78474894 - AluSx SINE Alu -10 302 1 236 295 9 62 chr15 7220944 7221056 -78474698 + MIR SINE MIR 136 241 -21 259 219 68 0 chr15 7222039 7222112 -78473642 + L1MEc LINE L1 1129 1206 -5217 * 357 242 10 20 chr15 7222111 7222210 -78473544 + L1MEc LINE L1 2677 2774 -4348 4031 257 60 15 chr15 7222231 7223657 -78472097 + L1MD2 LINE L1 3636 5126 -1815 3870 111 7 32 chr15 7223657 7224252 -78471502 - LTR12 LTR ERV1 -134 580 1 5077 208 45 32 chr15 7224253 7226244 -78469510 + L1MD2 LINE L1 5123 7145 -9 1462 215 9 25 chr15 7226263 7226588 -78469166 + L1MC1 LINE L1 6009 6328 -5 515 278 68 12 chr15 7226595 7226982 -78468772 + L1MEc LINE L1 2772 3145 -3796 319 201 36 65 chr15 7227045 7227153 -78468601 - L1M4b LINE L1 -5283 1263 1151 453 267 37 21 chr15 7227169 7227360 -78468394 - L1M4b LINE L1 -6335 207 14 1714 185 13 3 chr15 7227744 7228042 -78467712 + AluJo SINE Alu 1 301 -11 1692 124 31 99 chr15 7228101 7228423 -78467331 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr15 7228899 7228934 -78466820 + AT_rich Low_complexity Low_complexity 1 35 0 322 209 50 97 chr15 7229079 7229288 -78466466 + L1MCc LINE L1 12 519 -5903 667 229 91 47 chr15 7229778 7230097 -78465657 + L1MCc LINE L1 1665 1997 -4944 1076 270 14 0 chr15 7230503 7230781 -78464973 - MLT1-int LTR MaLR -770 601 320 611 64 0 0 chr15 7230781 7230859 -78464895 - AluY SINE Alu -16 295 218 843 261 32 16 chr15 7230861 7231110 -78464644 - MLT1-int LTR MaLR -1118 253 1 1720 175 3 3 chr15 7231114 7231423 -78464331 - AluJb SINE Alu -1 311 3 195 184 0 0 chr15 7232103 7232141 -78463613 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 240 30 20 chr15 7233582 7233682 -78462072 + (TA)n Simple_repeat Simple_repeat 1 101 0 2371 141 27 3 chr15 7233701 7234076 -78461678 - Tigger2 DNA MER2_type -1 2717 2334 7855 22 1 0 chr15 7234143 7235768 -78459986 + L1PA3 LINE L1 4530 6155 0 1672 141 3 21 chr15 7235909 7236193 -78459561 - L1PA16 LINE L1 0 6166 5888 211 282 0 73 chr15 7236542 7236666 -78459088 + L2 LINE L2 3195 3309 -4 21 0 0 0 chr15 7236993 7237014 -78458740 + AT_rich Low_complexity Low_complexity 1 21 0 506 200 78 9 chr15 7237685 7237800 -78457954 - MIR SINE MIR -103 159 37 1313 211 42 7 chr15 7238092 7238377 -78457377 + MLT1F LTR MaLR 243 537 -5 180 355 0 0 chr15 7238453 7238515 -78457239 + L2 LINE L2 3252 3313 0 266 270 0 0 chr15 7238550 7238613 -78457141 - L2 LINE L2 -5 3308 3246 309 318 85 23 chr15 7238664 7238840 -78456914 - LTR16C LTR ERVL -218 273 87 2325 83 0 3 chr15 7239074 7239386 -78456368 + AluSq SINE Alu 1 311 -2 1350 224 55 22 chr15 7239852 7240214 -78455540 + MLT1A2 LTR MaLR 1 374 0 2324 91 0 0 chr15 7240578 7240886 -78454868 - AluY SINE Alu -3 308 1 216 229 0 29 chr15 7241298 7241368 -78454386 + T-rich Low_complexity Low_complexity 2 69 0 1527 173 41 77 chr15 7244133 7244185 -78451569 - MLT1B LTR MaLR -16 374 322 2067 107 4 0 chr15 7244185 7244504 -78451250 + AluSq SINE Alu 1 320 0 1527 173 41 77 chr15 7244504 7244838 -78450916 - MLT1B LTR MaLR -68 322 1 392 298 55 34 chr15 7244927 7245131 -78450623 + MIR SINE MIR 11 219 -43 186 43 0 0 chr15 7245507 7245530 -78450224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1153 133 87 18 chr15 7245618 7245836 -78449918 - THE1C LTR MaLR 0 375 143 2596 217 96 51 chr15 7295836 7296596 -78399158 - L1M4 LINE L1 -846 5300 4507 241 324 10 0 chr15 7296593 7296695 -78399059 + HAL1 LINE L1 1506 1608 -899 * 468 316 210 14 chr15 7296706 7297292 -78398462 - L2 LINE L2 -1480 1834 1134 2025 119 24 0 chr15 7297342 7297636 -78398118 + AluSx SINE Alu 1 301 -11 325 302 148 20 chr15 7297824 7297973 -78397781 - MER5B DNA MER1_type -1 177 10 1546 78 59 4 chr15 7298491 7298520 -78397234 + L1M4c LINE L1 1447 1473 -4909 6904 65 4 0 chr15 7298520 7299978 -78395776 - L1PA5 LINE L1 0 6154 4722 1546 78 59 4 chr15 7299978 7300176 -78395578 + L1M4c LINE L1 1473 2172 -4210 186 143 79 16 chr15 7301251 7301377 -78394377 + (TA)n Simple_repeat Simple_repeat 1 134 0 35 24 0 0 chr15 7301384 7301426 -78394328 + AT_rich Low_complexity Low_complexity 1 42 0 34 42 0 0 chr15 7301478 7301526 -78394228 + AT_rich Low_complexity Low_complexity 1 48 0 186 303 96 11 chr15 7302054 7302232 -78393522 - L2 LINE L2 -195 3077 2885 318 236 36 86 chr15 7302324 7302404 -78393350 - L2 LINE L2 -528 2786 2714 2189 107 17 0 chr15 7302404 7302704 -78393050 - AluSq SINE Alu -8 305 1 318 236 36 86 chr15 7302704 7302763 -78392991 - L2 LINE L2 -600 2714 2654 802 273 98 52 chr15 7302964 7303640 -78392114 - L1ME3A LINE L1 -1 6163 5423 2196 117 16 7 chr15 7304888 7305016 -78390738 + AluSx SINE Alu 1 126 -186 216 0 0 0 chr15 7305016 7305040 -78390714 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2196 117 16 7 chr15 7305040 7305220 -78390534 + AluSx SINE Alu 126 312 0 1434 206 133 69 chr15 7306593 7307126 -78388628 + L1ME3A LINE L1 5598 6164 -6 227 79 26 0 chr15 7308692 7308730 -78387024 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 247 188 0 chr15 7308734 7308819 -78386935 - MIR SINE MIR -71 191 91 522 0 0 0 chr15 7309388 7309446 -78386308 + (TG)n Simple_repeat Simple_repeat 2 59 0 2479 64 0 3 chr15 7310338 7310634 -78385120 - AluY SINE Alu -16 295 1 396 267 9 26 chr15 7310848 7310964 -78384790 + CT-rich Low_complexity Low_complexity 4 117 0 270 153 0 0 chr15 7310992 7311051 -78384703 + (CA)n Simple_repeat Simple_repeat 1 59 0 231 61 0 0 chr15 7311053 7311086 -78384668 + (TC)n Simple_repeat Simple_repeat 2 34 0 620 165 10 0 chr15 7311169 7311266 -78384488 + Charlie1a DNA MER1_type 1 98 -1357 6227 130 26 4 chr15 7311269 7312333 -78383421 + L1PB1 LINE L1 4704 5802 -349 425 51 39 13 chr15 7312333 7312411 -78383343 + (TA)n Simple_repeat Simple_repeat 2 81 0 6227 130 26 4 chr15 7312411 7312767 -78382987 + L1PB1 LINE L1 5802 6149 -2 238 271 0 14 chr15 7312767 7312837 -78382917 - L1M4 LINE L1 -2584 3562 3494 4116 188 92 18 chr15 7312842 7313784 -78381970 + Charlie1a DNA MER1_type 95 1106 -349 371 214 110 39 chr15 7313825 7314007 -78381747 - L1ME3A LINE L1 -209 5961 5767 1135 212 0 4 chr15 7314013 7314239 -78381515 - L1PA16 LINE L1 -8 6158 5934 1475 106 0 19 chr15 7314339 7314546 -78381208 - AluSq SINE Alu -110 203 1 594 258 139 0 chr15 7315037 7315246 -78380508 - MIR SINE MIR -4 258 21 2415 85 0 16 chr15 7315631 7315947 -78379807 + AluY SINE Alu 1 311 0 979 248 18 5 chr15 7316746 7316964 -78378790 - MER58A DNA MER1_type -2 222 2 1015 189 0 0 chr15 7317566 7317735 -78378019 - MLT1A1 LTR MaLR 0 365 197 384 174 0 29 chr15 7317739 7317808 -78377946 - MLT1A1 LTR MaLR -298 67 1 796 42 0 0 chr15 7319235 7319330 -78376424 - L1P2 LINE L1 -619 5535 5441 1578 237 68 44 chr15 7319380 7319924 -78375830 - L1MC4 LINE L1 -506 7536 6980 861 184 48 0 chr15 7320462 7320609 -78375145 - FRAM SINE Alu -14 162 9 1072 274 79 51 chr15 7320683 7321290 -78374464 + L2 LINE L2 2310 2933 -381 3356 126 46 59 chr15 7321640 7321777 -78373977 + MER7C DNA MER2_type 1 138 -2890 2394 64 7 3 chr15 7321777 7322073 -78373681 - AluY SINE Alu -12 299 3 3356 126 46 59 chr15 7322073 7322545 -78373209 + MER7C DNA MER2_type 138 602 0 221 339 101 0 chr15 7323231 7323340 -78372414 + L2 LINE L2 3142 3261 -11 22 0 0 0 chr15 7324770 7324792 -78370962 + GC_rich Low_complexity Low_complexity 1 22 0 2436 104 0 0 chr15 7325142 7325509 -78370245 - AluSg SINE Alu 0 367 1 543 267 68 15 chr15 7326224 7326430 -78369324 + L2 LINE L2 2949 3165 -148 212 244 37 49 chr15 7326521 7326603 -78369151 - L2 LINE L2 -51 3221 3141 3976 176 21 32 chr15 7326899 7327505 -78368249 + LTR39 LTR ERV1 1 599 -184 2243 121 3 0 chr15 7327505 7327811 -78367943 - AluSx SINE Alu -5 307 1 3976 176 21 32 chr15 7327811 7327995 -78367759 + LTR39 LTR ERV1 599 783 0 21 57 0 0 chr15 7328148 7328183 -78367571 + AT_rich Low_complexity Low_complexity 1 35 0 1247 256 83 48 chr15 7329307 7329886 -78365868 + L1ME1 LINE L1 823 1421 -4988 4190 233 75 33 chr15 7330000 7330316 -78365438 + L1ME1 LINE L1 4180 4481 -1945 261 0 0 0 chr15 7330316 7330345 -78365409 + (CA)n Simple_repeat Simple_repeat 2 30 0 4190 233 75 33 chr15 7330345 7331693 -78364061 + L1ME1 LINE L1 4481 5953 -473 2229 101 6 25 chr15 7331693 7332009 -78363745 + AluSg SINE Alu 1 310 0 4190 233 75 33 chr15 7332009 7332504 -78363250 + L1ME1 LINE L1 5953 6426 0 417 223 11 11 chr15 7332786 7332880 -78362874 - L1ME LINE L1 -507 5919 5826 1112 234 57 29 chr15 7332885 7333570 -78362184 - L1MDb LINE L1 -3653 2753 2059 1956 153 14 0 chr15 7333596 7333890 -78361864 - AluJb SINE Alu -13 299 2 282 315 31 8 chr15 7337199 7337326 -78358428 - L2 LINE L2 -4 3309 3180 525 254 46 23 chr15 7337432 7337605 -78358149 + MER5B DNA MER1_type 2 178 0 2637 225 92 35 chr15 7338124 7338956 -78356798 - L1MDb LINE L1 -4411 1995 1109 2152 114 0 0 chr15 7338956 7339267 -78356487 - AluSx SINE Alu 0 311 1 2637 225 92 35 chr15 7339267 7339620 -78356134 - L1MDb LINE L1 -5297 1109 777 2695 157 74 9 chr15 7340111 7340666 -78355088 - L1MB8 LINE L1 -16 6162 5572 361 190 139 0 chr15 7340767 7340846 -78354908 - MLT1B LTR MaLR -300 90 1 332 22 0 22 chr15 7342998 7343044 -78352710 + (TG)n Simple_repeat Simple_repeat 2 46 0 317 340 40 0 chr15 7343903 7344053 -78351701 + MIR SINE MIR 92 247 -15 3624 51 0 22 chr15 7348595 7349001 -78346753 + MLT2A1 LTR ERVL 1 397 -47 414 57 0 0 chr15 7349001 7349054 -78346700 + (CA)n Simple_repeat Simple_repeat 2 54 0 3624 51 0 22 chr15 7349054 7349101 -78346653 + MLT2A1 LTR ERVL 397 444 0 36 82 0 0 chr15 7349272 7349357 -78346397 + AT_rich Low_complexity Low_complexity 1 85 0 180 0 0 0 chr15 7350070 7350090 -78345664 + (T)n Simple_repeat Simple_repeat 1 20 0 1600 204 23 69 chr15 7351385 7351777 -78343977 - MLT1A2 LTR MaLR 0 374 1 869 296 92 40 chr15 7351903 7352569 -78343185 - HAL1b LINE L1 -295 1053 354 2139 118 5 62 chr15 7352636 7353010 -78342744 - THE1A LTR MaLR -2 353 1 11769 99 5 0 chr15 7353010 7354582 -78341172 - THE1A-int LTR MaLR 0 1580 1 2011 136 21 51 chr15 7354582 7354957 -78340797 - THE1B LTR MaLR 0 364 1 1952 150 0 27 chr15 7355084 7355384 -78340370 + AluSx SINE Alu 1 292 -20 826 176 96 0 chr15 7355767 7355955 -78339799 - L1MA6 LINE L1 -4 6296 6091 183 277 0 0 chr15 7356450 7356497 -78339257 + L2 LINE L2 3267 3313 0 227 289 105 9 chr15 7357826 7357940 -78337814 - MIR SINE MIR -26 236 112 1443 232 72 5 chr15 7358360 7358774 -78336980 + L1ME2 LINE L1 4740 5181 -965 1316 271 119 18 chr15 7358778 7359530 -78336224 + L1ME2 LINE L1 5282 6137 -27 3575 158 75 7 chr15 7359883 7360560 -78335194 - L1MB2 LINE L1 -7 6164 5442 183 129 0 0 chr15 7361707 7361738 -78334016 + (CAGAA)n Simple_repeat Simple_repeat 3 33 0 204 40 0 0 chr15 7361831 7361856 -78333898 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 809 208 27 6 chr15 7362651 7362834 -78332920 - MER53 DNA DNA 0 189 3 543 216 23 11 chr15 7363086 7363262 -78332492 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1332 119 75 40 chr15 7363278 7363504 -78332250 - MER46A DNA MER2_type -2 234 1 4708 237 60 15 chr15 7363938 7364686 -78331068 + L1M4 LINE L1 3623 4336 -1810 2285 93 0 59 chr15 7364686 7365008 -78330746 + AluSg SINE Alu 1 303 -7 4708 237 60 15 chr15 7365008 7365734 -78330020 + L1M4 LINE L1 4336 5163 -983 230 343 0 0 chr15 7366338 7366408 -78329346 + L2 LINE L2 2930 2999 -314 408 318 50 22 chr15 7366443 7366720 -78329034 + LTR40c LTR ERVL 68 352 -113 1701 188 15 52 chr15 7367193 7367598 -78328156 + MLT1B LTR MaLR 1 390 0 181 258 0 16 chr15 7367870 7367932 -78327822 - L2 LINE L2 -73 3240 3180 677 284 23 23 chr15 7367955 7368173 -78327581 + HsTC2 DNA Tc2 296 513 -1385 307 269 107 61 chr15 7368308 7368400 -78327354 + HsTC2 DNA Tc2 1633 1719 -179 2210 114 3 0 chr15 7368400 7368689 -78327065 + AluSx SINE Alu 1 290 -22 307 269 107 61 chr15 7368689 7368793 -78326961 + HsTC2 DNA Tc2 1719 1838 -60 1953 177 34 46 chr15 7368824 7369173 -78326581 + MLT2D LTR ERVL 4 349 -65 561 63 32 0 chr15 7369173 7369268 -78326486 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1953 177 34 46 chr15 7369268 7369331 -78326423 + MLT2D LTR ERVL 349 411 -3 232 247 52 13 chr15 7369604 7369681 -78326073 - MIR SINE MIR -116 146 67 426 263 15 23 chr15 7370749 7370882 -78324872 + L2 LINE L2 3182 3313 0 439 301 160 19 chr15 7371121 7371718 -78324036 + L1M4 LINE L1 4741 5421 -749 403 301 205 23 chr15 7372876 7373741 -78322013 - L2 LINE L2 -351 2963 1942 2483 84 0 0 chr15 7374107 7374415 -78321339 + AluSc SINE Alu 1 308 -1 654 166 31 43 chr15 7375069 7375232 -78320522 + MER5A DNA MER1_type 6 166 -23 568 68 14 0 chr15 7375539 7375612 -78320142 - AluSp SINE Alu -174 139 66 838 80 26 0 chr15 7375612 7375725 -78320029 + AluSp/q SINE Alu 187 302 -11 294 307 37 49 chr15 7376433 7376596 -78319158 + MIR SINE MIR 33 193 -69 258 203 51 0 chr15 7377100 7377159 -78318595 + MLT1K LTR MaLR 517 578 -10 456 247 124 34 chr15 7379119 7379157 -78316597 - MIR SINE MIR 0 262 229 2392 125 89 0 chr15 7379157 7379550 -78316204 - MSTC LTR MaLR 0 428 1 456 247 124 34 chr15 7379550 7379689 -78316065 - MIR SINE MIR -33 229 69 229 287 91 42 chr15 7379831 7379974 -78315780 - MLT1J1 LTR MaLR -164 282 133 3945 205 70 3 chr15 7380746 7381620 -78314134 - Charlie1a DNA MER1_type -4 1451 520 529 300 70 36 chr15 7381727 7381892 -78313862 - L1M4 LINE L1 -842 5304 5146 2029 149 0 0 chr15 7381892 7382194 -78313560 - AluSx SINE Alu -9 303 2 529 300 70 36 chr15 7382194 7382415 -78313339 - L1M4 LINE L1 -1000 5146 4905 1130 213 125 86 chr15 7384170 7384587 -78311167 - Charlie1a DNA MER1_type -969 486 54 699 291 124 25 chr15 7384743 7385217 -78310537 + L2 LINE L2 1992 2512 -802 193 254 42 42 chr15 7385496 7385567 -78310187 + L2 LINE L2 2866 2936 -336 1248 243 157 10 chr15 7386439 7386895 -78308859 - MLT1G LTR MaLR -96 494 1 294 73 0 0 chr15 7389217 7389258 -78306496 + (TG)n Simple_repeat Simple_repeat 1 41 0 1274 211 73 10 chr15 7390642 7390972 -78304782 + MLT1A1 LTR MaLR 1 362 -3 745 11 0 0 chr15 7391041 7391128 -78304626 - L1PA3 LINE L1 0 6155 6069 394 314 197 20 chr15 7392396 7392695 -78303059 + L2 LINE L2 2962 3313 0 270 0 0 0 chr15 7392880 7392910 -78302844 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 337 44 12 chr15 7394264 7394368 -78301386 - MIR SINE MIR -47 161 55 1827 160 45 15 chr15 7394385 7394722 -78301032 + MLT1A1 LTR MaLR 14 360 -5 229 270 0 0 chr15 7394905 7394979 -78300775 + (TA)n Simple_repeat Simple_repeat 2 75 0 611 273 35 0 chr15 7395319 7395491 -78300263 - MER5B DNA MER1_type 0 178 1 298 282 40 24 chr15 7395588 7395712 -78300042 - L2 LINE L2 -30 3283 3158 2871 3 0 0 chr15 7395727 7396028 -78299726 - AluYa5 SINE Alu -10 301 1 649 308 68 39 chr15 7396384 7396722 -78299032 - L2 LINE L2 -686 2628 2281 3422 254 70 17 chr15 7396795 7398016 -78297738 - L1M4 LINE L1 -1847 4299 3015 1704 223 44 24 chr15 7398020 7398478 -78297276 - L1ME1 LINE L1 0 6166 5700 840 231 10 10 chr15 7398817 7399016 -78296738 + MER96B DNA MER1_type? 1 199 -218 248 331 131 19 chr15 7399251 7399411 -78296343 + MIR SINE MIR 22 199 -63 3357 219 83 50 chr15 7400848 7402170 -78293584 - L1MC5 LINE L1 -34 7927 6551 480 331 35 26 chr15 7402300 7402611 -78293143 - L1 LINE L1 -1815 4331 4018 423 0 0 0 chr15 7402623 7402670 -78293084 + (CA)n Simple_repeat Simple_repeat 2 48 0 2988 56 24 0 chr15 7402681 7403058 -78292696 - L1PA10 LINE L1 -15 6153 5768 14526 180 30 9 chr15 7403063 7408575 -78287179 - L1PB1 LINE L1 0 6867 1093 3617 215 68 12 chr15 7408579 7409536 -78286218 - L1PB1 LINE L1 -5818 1045 36 4124 101 32 8 chr15 7409546 7410100 -78285654 - L1P4 LINE L1 -387 5781 5196 2621 30 0 13 chr15 7410100 7410399 -78285355 + AluY SINE Alu 1 295 -16 4124 101 32 8 chr15 7410399 7410887 -78284867 - L1P4 LINE L1 -972 5196 4721 562 315 34 88 chr15 7410957 7411150 -78284604 - L1M4 LINE L1 -2251 3895 3693 1868 121 4 0 chr15 7411150 7411423 -78284331 - L1PA15 LINE L1 0 6165 5892 562 315 34 88 chr15 7411423 7411797 -78283957 - L1M4 LINE L1 -2453 3693 3359 395 205 36 0 chr15 7412431 7412514 -78283240 - Tigger5 DNA MER2_type 0 2323 2238 335 192 14 14 chr15 7412564 7412637 -78283117 - Tigger5 DNA MER2_type 0 2323 2251 234 253 89 79 chr15 7414254 7414444 -78281310 + MLT1K LTR MaLR 395 586 -2 255 279 87 10 chr15 7414652 7414756 -78280998 + MLT1J LTR MaLR 342 453 -58 644 268 75 56 chr15 7415068 7415592 -78280162 - L1MC/D LINE L1 -517 5647 5268 1018 275 90 14 chr15 7417016 7417383 -78278371 + MLT1I LTR MaLR 1 395 -14 297 233 58 0 chr15 7417396 7417482 -78278272 + L2 LINE L2 2188 2278 -1036 365 324 58 6 chr15 7417490 7417663 -78278091 + L2 LINE L2 2077 2258 -1056 321 26 0 0 chr15 7417762 7417800 -78277954 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr15 7417893 7417920 -78277834 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 318 228 65 76 chr15 7418865 7419049 -78276705 - L1MC/D LINE L1 -1467 4679 4498 755 346 84 31 chr15 7419082 7419761 -78275993 + L2 LINE L2 1865 2579 -735 184 322 46 107 chr15 7420074 7420335 -78275419 + L2 LINE L2 2993 3237 -35 1718 133 84 31 chr15 7420372 7420694 -78275060 + MER44D DNA MER2_type 1 609 0 194 281 109 0 chr15 7420745 7420809 -78274945 + MIR3 SINE MIR 9 79 -129 1770 167 35 12 chr15 7421385 7421727 -78274027 + MLT1A1 LTR MaLR 1 350 -15 339 327 10 0 chr15 7422090 7422194 -78273560 + MIR SINE MIR 41 145 -117 3976 125 39 3 chr15 7422697 7423320 -78272434 + L1MC1 LINE L1 5689 6333 0 192 263 40 0 chr15 7424598 7424674 -78271080 + MIR SINE MIR 158 236 -26 497 311 212 20 chr15 7424824 7425126 -78270628 + L2 LINE L2 2912 3271 -1 6775 70 20 2 chr15 7425530 7426673 -78269081 + L1PA13 LINE L1 4335 5513 -650 2195 95 0 41 chr15 7426673 7426989 -78268765 + AluSx SINE Alu 1 303 -9 6775 70 20 2 chr15 7426989 7427648 -78268106 + L1PA13 LINE L1 5513 6159 -4 344 265 10 20 chr15 7427738 7427840 -78267914 + L1MC5 LINE L1 7813 7913 -48 30 43 0 43 chr15 7428143 7428213 -78267541 + AT_rich Low_complexity Low_complexity 1 67 0 1855 139 4 0 chr15 7428272 7428531 -78267223 - AluSx SINE Alu -30 282 23 276 316 114 42 chr15 7428707 7429226 -78266528 + L1ME LINE L1 5267 5822 -340 186 43 0 0 chr15 7430814 7430837 -78264917 + (AAATG)n Simple_repeat Simple_repeat 2 24 0 1708 148 81 0 chr15 7431034 7431305 -78264449 - AluSx SINE Alu -19 293 1 190 315 69 72 chr15 7431315 7431661 -78264093 - L2 LINE L2 -24 3289 2945 798 253 70 57 chr15 7431980 7432674 -78263080 + L1MDa LINE L1 2403 3287 -3253 249 221 22 177 chr15 7432670 7432764 -78262990 + L1MC5 LINE L1 7759 7813 -148 * 749 54 0 0 chr15 7432764 7432856 -78262898 - L1PA6 LINE L1 -7 6147 6056 249 221 22 177 chr15 7432856 7432942 -78262812 + L1MC5 LINE L1 7813 7911 -50 484 276 117 38 chr15 7432992 7433997 -78261757 + L1MDa LINE L1 3254 4458 -2082 5028 243 64 80 chr15 7434002 7435053 -78260701 + L1ME2 LINE L1 2215 3282 -2951 854 170 0 0 chr15 7435053 7435194 -78260560 + FLAM_C SINE Alu 1 141 -2 5028 243 64 80 chr15 7435194 7437764 -78257990 + L1ME2 LINE L1 3282 5859 -374 245 250 0 62 chr15 7437811 7437891 -78257863 + L1ME2 LINE L1 5859 5933 -298 690 268 36 13 chr15 7438077 7438301 -78257453 + L1ME2 LINE L1 5995 6223 -10 * 4014 207 129 16 chr15 7438298 7439613 -78256141 + L1MC4 LINE L1 6345 7713 -95 297 243 19 19 chr15 7439614 7439717 -78256037 + (TA)n Simple_repeat Simple_repeat 1 103 0 284 268 28 42 chr15 7439731 7439873 -78255881 + L1MC4 LINE L1 7902 8041 -1 896 189 33 6 chr15 7439895 7440075 -78255679 + L1ME LINE L1 5539 5723 -447 489 224 0 0 chr15 7440073 7440171 -78255583 - L1ME LINE L1 -363 5807 5710 * 799 248 105 33 chr15 7440163 7440254 -78255500 + L1ME LINE L1 5375 5458 -712 2754 28 6 0 chr15 7440254 7440575 -78255179 + L1PA4 LINE L1 5831 6153 -2 799 248 105 33 chr15 7440575 7440874 -78254880 + L1ME LINE L1 5458 5793 -377 * 5647 178 16 40 chr15 7440870 7441403 -78254351 + L1PA16 LINE L1 4027 4572 -1594 2137 121 17 0 chr15 7441403 7441700 -78254054 + AluSq SINE Alu 1 302 -11 5647 178 16 40 chr15 7441700 7443062 -78252692 + L1PA16 LINE L1 4572 5865 -301 1101 208 4 73 chr15 7443165 7443439 -78252315 + MLT1B LTR MaLR 132 386 -4 251 132 59 0 chr15 7444049 7444117 -78251637 + (TG)n Simple_repeat Simple_repeat 1 72 0 283 189 20 33 chr15 7444160 7444313 -78251441 + (TG)n Simple_repeat Simple_repeat 2 152 0 570 256 45 0 chr15 7446290 7446446 -78249308 + MER103 DNA DNA 3 165 -1 347 339 75 18 chr15 7446775 7447159 -78248595 - MLT1I LTR MaLR -1 408 3 2230 130 0 0 chr15 7447275 7447574 -78248180 - AluSx SINE Alu -13 299 1 203 309 82 10 chr15 7448205 7448302 -78247452 - MIR SINE MIR -69 139 36 2349 62 20 14 chr15 7449159 7449451 -78246303 + AluY SINE Alu 1 294 -17 736 204 11 43 chr15 7450588 7450774 -78244980 + MLT1A1 LTR MaLR 10 189 -176 819 268 5 0 chr15 7450794 7450992 -78244762 + MLT1A1 LTR MaLR 164 362 -3 627 293 154 17 chr15 7451184 7451542 -78244212 + MLT1I LTR MaLR 3 409 0 23 0 0 0 chr15 7451573 7451596 -78244158 + AT_rich Low_complexity Low_complexity 1 23 0 247 146 0 21 chr15 7452127 7452175 -78243579 + L1MD3 LINE L1 7938 7984 -11 243 241 56 19 chr15 7452424 7452586 -78243168 + (TA)n Simple_repeat Simple_repeat 1 168 0 257 247 141 12 chr15 7453242 7453327 -78242427 - MIR SINE MIR -27 235 140 4564 167 40 23 chr15 7453527 7453873 -78241881 - L1MB8 LINE L1 0 6178 5839 2296 84 0 40 chr15 7453873 7454195 -78241559 - AluSc SINE Alu 0 309 1 4564 167 40 23 chr15 7454195 7454914 -78240840 - L1MB8 LINE L1 -339 5839 5097 238 302 90 32 chr15 7457337 7457526 -78238228 + L1MC/D LINE L1 3882 4081 -2065 336 223 161 44 chr15 7457801 7458075 -78237679 + L1MC/D LINE L1 4524 4829 -1317 258 270 14 0 chr15 7458121 7458195 -78237559 + MLT1L LTR MaLR 3 77 -538 21 0 0 0 chr15 7458670 7458691 -78237063 + AT_rich Low_complexity Low_complexity 1 21 0 659 304 105 36 chr15 7458900 7459262 -78236492 + MLT1J2 LTR MaLR 62 448 -2 2216 112 24 37 chr15 7459303 7459679 -78236075 + THE1C LTR MaLR 3 373 -2 10984 101 14 33 chr15 7459681 7461292 -78234462 + THE1C-int LTR MaLR 1 1580 0 2013 103 44 82 chr15 7461294 7461682 -78234072 + THE1C LTR MaLR 3 375 0 266 299 53 66 chr15 7461830 7462074 -78233680 + L1MC/D LINE L1 5303 5543 -2265 356 278 20 13 chr15 7462897 7463048 -78232706 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 252 170 0 0 chr15 7463186 7463239 -78232515 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 381 255 5 54 chr15 7463248 7463432 -78232322 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1576 244 111 12 chr15 7464109 7464605 -78231149 + L1M4 LINE L1 4463 5007 -1139 187 254 6 36 chr15 7464633 7464798 -78230956 + (TG)n Simple_repeat Simple_repeat 1 160 0 203 138 0 0 chr15 7465467 7465496 -78230258 + L2 LINE L2 3216 3244 -28 275 125 0 0 chr15 7465510 7465558 -78230196 + L1MA3 LINE L1 6258 6305 0 1596 231 97 43 chr15 7466261 7466799 -78228955 - MLT1F1 LTR MaLR 0 567 1 424 216 69 99 chr15 7467114 7467256 -78228498 + LTR37B LTR ERV1 185 319 -149 2305 63 0 46 chr15 7467256 7467558 -78228196 + AluY SINE Alu 1 288 -23 424 216 69 99 chr15 7467558 7467647 -78228107 + LTR37B LTR ERV1 319 409 -59 210 302 16 93 chr15 7469453 7469582 -78226172 - MIR SINE MIR -130 132 14 835 286 101 49 chr15 7469699 7469826 -78225928 + L1MC4 LINE L1 7126 7245 -797 2379 88 0 7 chr15 7469826 7470122 -78225632 + AluSc SINE Alu 1 294 -15 835 286 101 49 chr15 7470122 7470773 -78224981 + L1MC4 LINE L1 7245 8042 0 40 59 0 0 chr15 7471449 7471517 -78224237 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 7471910 7471952 -78223802 + AT_rich Low_complexity Low_complexity 1 42 0 2656 192 15 65 chr15 7472309 7472986 -78222768 + L1M4 LINE L1 4658 5300 -846 * 5143 143 37 3 chr15 7472980 7474548 -78221206 + L1MA4 LINE L1 4486 6110 -190 3572 144 29 53 chr15 7476372 7476739 -78219015 - L1MA8 LINE L1 -155 6136 5793 2566 50 3 0 chr15 7476739 7477036 -78218718 - AluY SINE Alu -13 298 1 3572 144 29 53 chr15 7477036 7477391 -78218363 - L1MA8 LINE L1 -498 5793 5431 205 287 78 30 chr15 7479516 7479684 -78216070 - MIR SINE MIR -11 251 75 22 0 0 0 chr15 7480031 7480053 -78215701 + AT_rich Low_complexity Low_complexity 1 22 0 628 230 40 0 chr15 7480316 7480464 -78215290 + MER5A DNA MER1_type 1 154 -35 2561 61 0 0 chr15 7480974 7481271 -78214483 - AluY SINE Alu -14 297 1 222 258 0 0 chr15 7482414 7482476 -78213278 + CT-rich Low_complexity Low_complexity 1 62 0 2524 211 42 24 chr15 7482654 7483281 -78212473 + L1MC4a LINE L1 7159 7796 -12 37 39 0 0 chr15 7483281 7483332 -78212422 + AT_rich Low_complexity Low_complexity 1 51 0 7044 207 65 10 chr15 7483335 7484927 -78210827 + L1MD1 LINE L1 3270 5083 -1159 231 36 0 0 chr15 7484927 7484955 -78210799 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 7044 207 65 10 chr15 7484955 7486182 -78209572 + L1MD1 LINE L1 5083 6241 -1 273 250 26 0 chr15 7486846 7486922 -78208832 + MER5A DNA MER1_type 29 106 -83 204 226 19 0 chr15 7486981 7487034 -78208720 + MIR SINE MIR 133 186 -76 627 227 129 12 chr15 7487718 7487881 -78207873 + MER58A DNA MER1_type 42 223 -1 256 373 35 35 chr15 7487890 7488091 -78207663 - L3 LINE CR1 -920 657 457 407 302 38 19 chr15 7488099 7488258 -78207496 - MIR3 SINE MIR -15 193 32 361 278 97 36 chr15 7490028 7490339 -78205415 + L1ME4a LINE L1 5396 5726 -568 267 313 12 0 chr15 7491677 7491757 -78203997 + (TA)n Simple_repeat Simple_repeat 2 82 0 275 294 76 0 chr15 7492016 7492135 -78203619 + L1ME4a LINE L1 5991 6118 -3 2284 92 27 0 chr15 7494357 7494650 -78201104 + AluSg SINE Alu 2 302 -8 1854 150 134 28 chr15 7497814 7498201 -78197553 - MSTA LTR MaLR 0 428 1 5625 57 1 11 chr15 7498357 7499060 -78196694 + L1PA7 LINE L1 5459 6154 0 516 216 78 33 chr15 7499064 7499217 -78196537 + L1MC4 LINE L1 7587 7746 -296 284 0 28 0 chr15 7500175 7500211 -78195543 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2287 88 0 3 chr15 7500211 7500490 -78195264 - AluSg SINE Alu -32 278 1 306 294 17 25 chr15 7500997 7501116 -78194638 + MIR SINE MIR 112 229 -33 729 94 0 0 chr15 7601198 7601294 -78094460 - LOR1a LTR ERV1 -401 96 1 993 108 28 34 chr15 7601294 7601470 -78094284 - L1MB4 LINE L1 -317 5863 5689 699 151 60 12 chr15 7601477 7601612 -78094142 - L1MB4 LINE L1 -711 5463 5315 2147 108 10 3 chr15 7601612 7601909 -78093845 - AluSx SINE Alu -13 299 1 699 151 60 12 chr15 7601909 7601940 -78093814 - L1MB4 LINE L1 -859 5315 5287 2034 114 3 17 chr15 7602322 7602620 -78093134 + AluSq SINE Alu 12 305 -8 691 170 44 11 chr15 7602622 7602888 -78092866 + L1MA9 LINE L1 5942 6312 0 24 0 0 0 chr15 7602891 7602915 -78092839 + AT_rich Low_complexity Low_complexity 1 24 0 3211 203 12 9 chr15 7602999 7603683 -78092071 + L1 LINE L1 3832 4517 -1629 697 106 0 113 chr15 7603783 7603919 -78091835 + AluSg/x SINE Alu 185 305 0 1945 97 10 34 chr15 7603919 7604217 -78091537 - AluSq SINE Alu -22 291 1 271 319 60 9 chr15 7605553 7605669 -78090085 - MIR SINE MIR -56 152 31 1640 198 3 13 chr15 7605677 7605980 -78089774 + AluJo SINE Alu 1 300 -12 704 133 0 0 chr15 7605984 7606082 -78089672 - AluSg/x SINE Alu -10 302 205 21 36 0 0 chr15 7606659 7606687 -78089067 + AT_rich Low_complexity Low_complexity 1 28 0 2528 81 0 0 chr15 7608182 7608489 -78087265 - AluY SINE Alu -4 307 1 1334 128 5 0 chr15 7608490 7608678 -78087076 + Charlie3 DNA MER1_type 2518 2706 -4 1317 146 5 0 chr15 7608680 7608900 -78086854 - L1MB3 LINE L1 -259 5924 5704 2024 137 0 3 chr15 7608975 7609260 -78086494 - AluSx SINE Alu -28 284 1 3592 201 45 20 chr15 7609260 7610183 -78085571 - L1MB3 LINE L1 -724 5460 4511 2017 148 3 3 chr15 7610686 7610983 -78084771 - AluSx SINE Alu -15 297 1 32 0 0 0 chr15 7611370 7611402 -78084352 + AT_rich Low_complexity Low_complexity 1 32 0 1232 279 99 25 chr15 7611530 7612014 -78083740 + MLT1E LTR MaLR 1 520 -73 11683 28 0 0 chr15 7612114 7614179 -78081575 + L1PA3 LINE L1 4090 6155 0 2488 77 0 0 chr15 7614201 7614512 -78081242 + AluY SINE Alu 1 311 0 205 306 16 0 chr15 7615488 7615550 -78080204 - L2 LINE L2 -219 3053 2991 339 91 73 0 chr15 7615554 7615609 -78080145 + L1MB1 LINE L1 5789 5847 -342 2086 190 28 2 chr15 7615712 7616134 -78079620 - L1MB3 LINE L1 -2383 3763 3331 2161 84 7 7 chr15 7616137 7616434 -78079320 - AluY SINE Alu -10 301 5 372 22 0 0 chr15 7616445 7616490 -78079264 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 56 0 0 chr15 7616587 7616623 -78079131 + GC_rich Low_complexity Low_complexity 1 36 0 228 356 30 15 chr15 7617352 7617484 -78078270 - MLT1I LTR MaLR -40 369 236 429 277 106 0 chr15 7618276 7618417 -78077337 - L1ME LINE L1 -484 5686 5531 2012 208 59 13 chr15 7618452 7618924 -78076830 - L1PA15 LINE L1 -1411 4735 4242 * 4117 212 23 37 chr15 7618919 7620380 -78075374 + L1PA15 LINE L1 4731 6164 -1 1011 286 58 25 chr15 7620389 7621107 -78074647 - L1ME LINE L1 -694 5470 4730 1782 141 10 47 chr15 7621160 7621457 -78074297 + AluJo SINE Alu 3 288 -24 784 112 5 53 chr15 7621484 7621672 -78074082 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1983 194 29 0 chr15 7621679 7622060 -78073694 + L1MA8 LINE L1 5894 6285 -6 2198 99 41 0 chr15 7622069 7622363 -78073391 + AluSp SINE Alu 1 306 -7 2910 56 0 6 chr15 7622371 7622713 -78073041 + L1PA8 LINE L1 5825 6164 -8 3038 233 74 26 chr15 7622848 7623792 -78071962 - L1MC3 LINE L1 -8 7777 6789 521 238 105 68 chr15 7623766 7624014 -78071740 - L1ME LINE L1 -1978 4168 3912 * 1178 163 0 11 chr15 7624114 7624304 -78071450 + LOR1a LTR ERV1 310 497 0 1205 172 33 20 chr15 7624304 7624548 -78071206 + L1MB4 LINE L1 5922 6168 -12 428 306 32 24 chr15 7624631 7624879 -78070875 + L1ME LINE L1 5472 5721 -400 1818 79 126 14 chr15 7625841 7626118 -78069636 + AluY SINE Alu 1 308 -3 374 264 130 47 chr15 7626118 7626331 -78069423 - MIR SINE MIR -37 225 3 905 143 0 15 chr15 7626652 7626785 -78068969 + FLAM_C SINE Alu 2 132 -1 24 67 0 0 chr15 7627090 7627135 -78068619 + AT_rich Low_complexity Low_complexity 1 45 0 1223 159 15 0 chr15 7630247 7630442 -78065312 - AluJo SINE Alu -111 201 4 419 271 64 0 chr15 7630846 7630986 -78064768 + MER3 DNA MER1_type 1 149 -60 1633 167 51 4 chr15 7630988 7631264 -78064490 - AluJb SINE Alu -12 300 12 327 298 107 8 chr15 7631553 7631674 -78064080 + L2 LINE L2 3136 3268 -4 2309 101 0 3 chr15 7632492 7632799 -78062955 + AluSx SINE Alu 3 308 -4 903 133 7 7 chr15 7632842 7632985 -78062769 + FLAM_C SINE Alu 1 143 0 252 184 0 0 chr15 7632988 7633026 -78062728 + AluJ/F(R)AM SINE Alu 131 168 -134 229 282 0 0 chr15 7633077 7633148 -78062606 + A-rich Low_complexity Low_complexity 1 71 0 1108 182 8 29 chr15 7634430 7634672 -78061082 + L1PA14 LINE L1 5925 6161 0 1820 142 62 8 chr15 7634675 7635027 -78060727 + L1MB7 LINE L1 5579 5949 -235 233 302 0 0 chr15 7636197 7636260 -78059494 - MIR SINE MIR 0 262 200 2182 115 0 7 chr15 7636287 7636582 -78059172 + AluSx SINE Alu 1 293 -19 264 254 231 6 chr15 7636722 7636895 -78058859 - MLT1I LTR MaLR -197 212 1 377 277 17 8 chr15 7636927 7637046 -78058708 - MIR SINE MIR -122 140 21 2168 89 11 0 chr15 7637057 7637363 -78058391 - AluSp SINE Alu 0 309 1 309 183 0 0 chr15 7637367 7637427 -78058327 - L1MA8 LINE L1 0 6291 6232 2950 183 29 11 chr15 7637461 7638014 -78057740 - L1MA8 LINE L1 -47 6244 5682 193 328 0 30 chr15 7638222 7638289 -78057465 - MIR SINE MIR -192 70 6 306 337 10 10 chr15 7638447 7638548 -78057206 - MER91B DNA MER1_type 0 190 90 264 343 9 9 chr15 7638565 7638670 -78057084 - MER91B DNA MER1_type -61 129 25 318 340 125 24 chr15 7639050 7639338 -78056416 + L3 LINE CR1 733 1049 -528 31351 39 34 3 chr15 7639978 7643818 -78051936 + L1P LINE L1 1 3961 -2185 239 318 56 0 chr15 7644377 7644484 -78051270 + L1ME LINE L1 5615 5727 -394 3832 27 0 0 chr15 7644812 7645250 -78050504 - L1PA3 LINE L1 -7 6148 5711 982 9 0 0 chr15 7645250 7645357 -78050397 - U6 snRNA snRNA 0 107 1 22 0 0 0 chr15 7646918 7646940 -78048814 + AT_rich Low_complexity Low_complexity 1 22 0 2400 230 20 52 chr15 7646943 7647026 -78048728 - L1MA9 LINE L1 -38 6274 6190 474 65 0 0 chr15 7647026 7647088 -78048666 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 7647088 7647760 -78047994 - L1MA9 LINE L1 -122 6190 5543 4610 200 29 4 chr15 7647771 7648793 -78046961 - L1MA9 LINE L1 -743 5403 4356 570 209 47 16 chr15 7648902 7649093 -78046661 - L1MA9 LINE L1 -2939 3207 3011 1056 187 60 60 chr15 7649109 7649392 -78046362 + L1MD2 LINE L1 6075 6357 -2 2046 114 4 0 chr15 7649800 7650072 -78045682 - AluSg SINE Alu -8 302 30 459 228 41 0 chr15 7653504 7653627 -78042127 - L1M4 LINE L1 -1278 4868 4741 2469 129 24 62 chr15 7653659 7654109 -78041645 + Tigger2a DNA MER2_type 1 433 -1 1564 181 59 25 chr15 7654116 7654437 -78041317 + MER2 DNA MER2_type 1 332 -13 348 181 194 0 chr15 7654443 7654515 -78041239 + MER21B LTR ERV1 11 96 -767 3035 231 46 10 chr15 7654515 7655414 -78040340 - L1M4 LINE L1 -2200 3946 3016 1621 250 116 27 chr15 7655387 7656713 -78039041 - L1MEc LINE L1 -2525 3690 1740 * 341 205 111 0 chr15 7656738 7656855 -78038899 - L1MEc LINE L1 -4636 1579 1450 2372 95 3 13 chr15 7656859 7657174 -78038580 - AluSp SINE Alu -1 312 1 1017 145 0 7 chr15 7657176 7657328 -78038426 - FRAM SINE Alu -5 171 21 698 197 8 0 chr15 7657568 7657695 -78038059 - FLAM_C SINE Alu -3 130 3 954 273 48 28 chr15 7657751 7658151 -78037603 - L1MEc LINE L1 -5631 765 358 262 226 10 78 chr15 7658197 7658299 -78037455 - L1MEc LINE L1 -6013 383 289 1215 165 0 0 chr15 7658350 7658556 -78037198 - Tigger1 DNA MER2_type -420 1998 1793 1169 156 28 28 chr15 7658656 7658868 -78036886 - AluJb SINE Alu -93 219 8 405 113 141 0 chr15 7659015 7659086 -78036668 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 7659352 7659599 -78036155 - AluSg SINE Alu -63 247 1 940 95 0 0 chr15 7660112 7660228 -78035526 + AluSq/x SINE Alu 1 116 -196 851 131 0 0 chr15 7660228 7660350 -78035404 + AluSc SINE Alu 166 287 -22 1136 160 5 0 chr15 7660350 7660537 -78035217 + AluSx SINE Alu 119 306 -4 252 299 41 0 chr15 7660635 7660732 -78035022 + MIR SINE MIR 92 192 -70 2433 89 0 13 chr15 7661708 7662023 -78033731 - AluY SINE Alu 0 311 1 1622 80 40 13 chr15 7662308 7662532 -78033222 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 7662623 7662773 -78032981 - L1MD3 LINE L1 -10 7985 7808 657 189 15 8 chr15 7662773 7662905 -78032849 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 7662905 7663129 -78032625 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 7663129 7663153 -78032601 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1970 114 0 0 chr15 7663154 7663417 -78032337 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 7663417 7663563 -78032191 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 7664037 7664195 -78031559 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 7664288 7664318 -78031436 + AT_rich Low_complexity Low_complexity 1 30 0 2018 189 13 30 chr15 7664716 7665113 -78030641 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 7666003 7666143 -78029611 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 7666786 7666891 -78028863 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 7667445 7667738 -78028016 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 7667814 7668638 -78027116 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 7668856 7668994 -78026760 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 7668881 7669013 -78026741 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 7669023 7669199 -78026555 + MER58A DNA MER1_type 45 224 0 13754 102 109 17 chr15 7670011 7670219 -78025535 - L1PBa LINE L1 -3752 3110 2923 1802 150 44 7 chr15 7670219 7670512 -78025242 - AluSx SINE Alu -8 304 1 13754 102 109 17 chr15 7670512 7670523 -78025231 - L1PBa LINE L1 -3939 2923 2914 2209 66 27 40 chr15 7670523 7670824 -78024930 - AluY SINE Alu -14 297 1 13754 102 109 17 chr15 7670824 7672867 -78022887 - L1PBa LINE L1 -3948 2914 634 1114 155 26 0 chr15 7672867 7673060 -78022694 - L1PBa LINE L1 -6663 200 3 207 69 0 0 chr15 7675984 7676013 -78019741 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 969 163 0 18 chr15 7677135 7677301 -78018453 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 7677986 7678074 -78017680 - MIR SINE MIR -70 192 96 1934 140 0 39 chr15 7678125 7678433 -78017321 - AluSx SINE Alu -15 297 2 424 217 104 47 chr15 7680551 7680721 -78015033 - MIR SINE MIR -58 150 16 234 149 40 81 chr15 7680887 7680907 -78014847 - L1MC4a LINE L1 -1853 5955 5936 384 22 0 0 chr15 7680907 7680952 -78014802 + (CA)n Simple_repeat Simple_repeat 1 45 0 234 149 40 81 chr15 7680952 7681005 -78014749 - L1MC4a LINE L1 -1872 5936 5885 289 198 62 31 chr15 7682349 7682445 -78013309 - L2 LINE L2 -5 3267 3169 225 364 0 0 chr15 7682522 7682621 -78013133 - MIR SINE MIR -79 129 31 386 257 99 41 chr15 7683758 7683905 -78011849 - MIR SINE MIR -70 192 32 2358 94 7 0 chr15 7683905 7684203 -78011551 - AluY SINE Alu -11 300 1 386 257 99 41 chr15 7684203 7684226 -78011528 - MIR SINE MIR -230 32 12 1943 122 10 0 chr15 7686889 7687210 -78008544 + AluY SINE Alu 1 311 0 528 267 172 49 chr15 7687245 7687607 -78008147 + L1M4 LINE L1 2922 3312 -2834 2460 52 0 13 chr15 7687646 7687953 -78007801 - AluY SINE Alu -8 303 1 2273 80 0 3 chr15 7688386 7688697 -78007057 - AluY SINE Alu -1 310 1 252 37 8 0 chr15 7689066 7689143 -78006611 + (CA)n Simple_repeat Simple_repeat 1 34 0 1233 179 0 17 chr15 7689541 7689775 -78005979 - AluSg/x SINE Alu 0 310 81 238 288 16 114 chr15 7690147 7690315 -78005439 - L2 LINE L2 -211 3061 2910 1861 130 0 18 chr15 7690315 7690635 -78005119 + AluSx SINE Alu 6 320 0 238 288 16 114 chr15 7690635 7690649 -78005105 - L2 LINE L2 -362 2910 2896 235 149 0 21 chr15 7691143 7691190 -78004564 - MADE1 DNA Mariner -1 79 34 539 285 104 10 chr15 7691835 7692028 -78003726 - L2 LINE L2 0 3313 3103 450 189 14 0 chr15 7692077 7692151 -78003603 - MER33 DNA MER1_type -246 78 4 226 267 30 0 chr15 7692358 7692459 -78003295 - L1MEd LINE L1 -2775 3354 3251 57 39 0 0 chr15 7692475 7692553 -78003201 + AT_rich Low_complexity Low_complexity 1 78 0 360 214 22 0 chr15 7692626 7692715 -78003039 - L1MC5 LINE L1 -72 7889 7799 2077 124 7 0 chr15 7692818 7693125 -78002629 - AluSx SINE Alu -3 309 1 526 332 84 8 chr15 7693202 7693452 -78002302 + L2 LINE L2 3045 3313 0 787 169 11 56 chr15 7693948 7694126 -78001628 - MER77 LTR ERV1 -20 585 416 * 1205 165 30 121 chr15 7694125 7694422 -78001332 - MER77 LTR ERV1 -335 270 1 386 290 65 0 chr15 7694422 7694546 -78001208 - L1M4 LINE L1 -1442 5406 5275 306 342 97 15 chr15 7694816 7695012 -78000742 - L1M4 LINE L1 -2532 4316 4105 565 234 69 58 chr15 7695056 7695244 -78000510 + MLT1F LTR MaLR 163 352 -190 189 0 0 0 chr15 7695244 7695265 -78000489 + (T)n Simple_repeat Simple_repeat 1 21 0 203 191 48 0 chr15 7695649 7695691 -78000063 - MIR SINE MIR -116 146 103 357 263 98 103 chr15 7695917 7696469 -77999285 - L1M4 LINE L1 -5516 1333 785 48 72 0 0 chr15 7698133 7698230 -77997524 + GC_rich Low_complexity Low_complexity 1 97 0 28 29 0 0 chr15 7698246 7698281 -77997473 + GC_rich Low_complexity Low_complexity 1 35 0 27 35 0 0 chr15 7698483 7698512 -77997242 + GC_rich Low_complexity Low_complexity 1 29 0 649 259 33 24 chr15 7698540 7698752 -77997002 + MLT1F LTR MaLR 329 542 0 359 240 117 52 chr15 7698840 7698994 -77996760 - L1MEd LINE L1 -3316 2813 2650 467 349 72 16 chr15 7699078 7699382 -77996372 - L1MEd LINE L1 -3670 2459 2139 1349 199 55 2 chr15 7699382 7699774 -77995980 - LTR53 LTR ERVL -12 507 8 743 245 88 111 chr15 7700234 7700667 -77995087 + LTR16A LTR ERVL 8 430 -20 359 353 31 36 chr15 7700674 7700898 -77994856 - L1MEd LINE L1 -5524 595 373 325 298 101 6 chr15 7701024 7701192 -77994562 - L1MEd LINE L1 -5922 197 14 399 195 81 0 chr15 7701897 7701984 -77993770 + MLT1F1 LTR MaLR 474 567 0 1819 198 29 3 chr15 7706506 7706855 -77988899 + MLT2D LTR ERVL 1 358 -56 200 146 0 42 chr15 7706924 7706972 -77988782 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 361 102 0 0 chr15 7707002 7707051 -77988703 + MLT2D LTR ERVL 349 397 0 246 255 0 0 chr15 7707864 7707908 -77987846 + CT-rich Low_complexity Low_complexity 1 47 -4 2113 117 3 0 chr15 7707908 7708208 -77987546 - AluSx SINE Alu -11 301 1 677 325 60 39 chr15 7708275 7708743 -77987011 - L2 LINE L2 0 3313 2836 201 94 0 0 chr15 7709228 7709260 -77986494 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 399 330 53 15 chr15 7709289 7709495 -77986259 - L1M4 LINE L1 -2712 3434 3221 259 250 31 0 chr15 7709502 7709566 -77986188 - L1M4 LINE L1 -2562 3584 3519 21 0 0 0 chr15 7709579 7709600 -77986154 + AT_rich Low_complexity Low_complexity 1 21 0 1907 124 0 20 chr15 7709610 7709909 -77985845 + AluSx SINE Alu 1 293 -19 270 0 0 0 chr15 7710039 7710069 -77985685 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1868 105 4 15 chr15 7710069 7710208 -77985546 - AluSc SINE Alu -27 282 146 2178 102 0 7 chr15 7710208 7710512 -77985242 - AluSg1 SINE Alu -7 302 1 1868 105 4 15 chr15 7710512 7710639 -77985115 - AluSc SINE Alu -163 146 19 389 281 102 38 chr15 7710648 7710883 -77984871 - LTR33 LTR ERVL -8 513 264 335 250 0 81 chr15 7710955 7711079 -77984675 - LTR33 LTR ERVL -407 114 1 235 329 39 24 chr15 7711265 7711472 -77984282 + HAL1 LINE L1 1170 1379 -1128 336 305 176 11 chr15 7711554 7711741 -77984013 + L1M4 LINE L1 4478 4695 -1451 3588 262 71 42 chr15 7712482 7714043 -77981711 + L1M3c LINE L1 1 1516 -4694 1498 153 4 0 chr15 7714043 7714278 -77981476 + MER46A DNA MER2_type 1 236 0 3588 262 71 42 chr15 7714278 7715187 -77980567 + L1M3c LINE L1 1516 2398 -3812 279 0 0 0 chr15 7715187 7715218 -77980536 + (CA)n Simple_repeat Simple_repeat 2 32 0 3588 262 71 42 chr15 7715218 7715967 -77979787 + L1M3c LINE L1 2398 3076 -3134 2016 130 0 0 chr15 7715967 7716286 -77979468 + AluSx SINE Alu 1 319 0 3588 262 71 42 chr15 7716286 7716813 -77978941 + L1M3c LINE L1 3076 3586 -2624 1437 112 0 0 chr15 7716815 7717012 -77978742 + AluSx SINE Alu 1 197 -115 1080 224 0 4 chr15 7717014 7717264 -77978490 + L1M3c LINE L1 3594 3842 -2368 1379 208 89 30 chr15 7717268 7717604 -77978150 - MSTB2 LTR MaLR -78 379 24 1276 196 159 20 chr15 7717762 7718108 -77977646 + MSTD LTR MaLR 1 394 -2 22 35 0 0 chr15 7718723 7718752 -77977002 + AT_rich Low_complexity Low_complexity 1 29 0 2111 70 0 0 chr15 7719809 7720080 -77975674 - AluSc SINE Alu -9 300 30 202 259 35 17 chr15 7720083 7720141 -77975613 + MER5A DNA MER1_type 128 186 -3 331 68 0 0 chr15 7720801 7720851 -77974903 + MLT2A2 LTR ERVL 1 43 -410 533 82 0 14 chr15 7720968 7721041 -77974713 - AluSq/x SINE Alu -167 145 74 251 175 48 32 chr15 7721857 7721920 -77973834 + C-rich Low_complexity Low_complexity 2 65 0 374 206 7 174 chr15 7722010 7722109 -77973645 + MIR SINE MIR 22 87 -175 186 43 0 0 chr15 7722109 7722132 -77973622 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 374 206 7 174 chr15 7722132 7722187 -77973567 + MIR SINE MIR 87 150 -112 279 0 0 0 chr15 7722580 7722611 -77973143 + (T)n Simple_repeat Simple_repeat 1 31 0 214 197 0 30 chr15 7724209 7724275 -77971479 + G-rich Low_complexity Low_complexity 5 68 0 239 79 26 0 chr15 7725338 7725376 -77970378 + (GA)n Simple_repeat Simple_repeat 2 40 0 225 212 150 53 chr15 7726271 7726384 -77969370 + MIR3 SINE MIR 1 124 -84 457 271 17 0 chr15 7726609 7726727 -77969027 + MIR3 SINE MIR 74 193 -15 298 295 216 48 chr15 7727010 7727237 -77968517 - L3b LINE CR1 -28 1555 1291 416 253 84 45 chr15 7727277 7727431 -77968323 + MIR3 SINE MIR 37 196 -12 563 287 85 49 chr15 7727562 7727809 -77967945 + MIR SINE MIR 3 258 -4 210 37 0 0 chr15 7727933 7727960 -77967794 + (TC)n Simple_repeat Simple_repeat 2 28 0 446 272 44 7 chr15 7728270 7728406 -77967348 + MIR3 SINE MIR 61 201 -7 514 273 15 8 chr15 7728562 7728694 -77967060 + MIR SINE MIR 16 148 -114 510 283 31 13 chr15 7729181 7729340 -77966414 - MIR3 SINE MIR -27 181 20 274 365 10 0 chr15 7729363 7729459 -77966295 + L3b LINE CR1 1290 1386 -197 326 281 144 27 chr15 7729469 7729615 -77966139 - MIR3 SINE MIR -42 166 4 204 313 0 0 chr15 7730061 7730128 -77965626 + L3b LINE CR1 1326 1392 -191 4351 31 2 4 chr15 7730512 7731031 -77964723 + L1PA4 LINE L1 5638 6155 0 220 333 26 0 chr15 7731382 7731460 -77964294 + L3b LINE CR1 1319 1398 -185 1040 147 0 6 chr15 7732094 7732257 -77963497 - AluJb SINE Alu -24 288 127 180 0 0 0 chr15 7732272 7732292 -77963462 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 870 127 0 8 chr15 7732296 7732430 -77963324 - AluJb SINE Alu -179 133 1 803 260 49 29 chr15 7732490 7732736 -77963018 + MIR SINE MIR 2 252 -10 181 149 255 0 chr15 7733888 7733935 -77961819 - MIR SINE MIR -64 144 86 263 307 118 26 chr15 7734241 7734394 -77961360 + MIR SINE MIR 18 184 -78 3021 171 11 4 chr15 7734402 7734950 -77960804 - L1MB7 LINE L1 0 6184 5633 2435 90 3 0 chr15 7734963 7735263 -77960491 - AluSp SINE Alu -12 301 1 635 240 47 42 chr15 7735295 7735487 -77960267 - MIR SINE MIR -34 228 36 188 297 95 0 chr15 7735515 7735589 -77960165 + MIR SINE MIR 176 256 -6 341 287 83 19 chr15 7735755 7735912 -77959842 + MIR3 SINE MIR 42 208 0 419 348 67 10 chr15 7736573 7736789 -77958965 - MIR SINE MIR -20 242 16 579 352 9 13 chr15 7737643 7737873 -77957881 - L3 LINE CR1 -3 1574 1346 260 242 0 0 chr15 7738513 7738579 -77957175 + MIR SINE MIR 78 143 -65 923 175 0 2 chr15 7739823 7740006 -77955748 - AluJo SINE Alu -95 217 3 624 235 56 17 chr15 7740589 7740768 -77954986 - MIR SINE MIR -54 208 23 246 211 158 0 chr15 7741368 7741444 -77954310 + MIR SINE MIR 113 200 -62 217 267 174 0 chr15 7741725 7741811 -77953943 + L2 LINE L2 3175 3275 -38 340 316 171 1 chr15 7742628 7742847 -77952907 - MIR SINE MIR -6 256 6 1517 89 171 4 chr15 7742925 7743182 -77952572 + AluJo SINE Alu 1 300 -2 248 299 35 56 chr15 7745078 7745222 -77950532 + MIR3 SINE MIR 63 203 -5 1923 171 0 3 chr15 7746447 7746756 -77948998 + AluJo SINE Alu 1 308 -4 338 228 41 86 chr15 7748027 7748207 -77947547 + MIR SINE MIR 41 219 -43 355 262 27 86 chr15 7748370 7748557 -77947197 + MER5A DNA MER1_type 7 182 -7 331 243 97 10 chr15 7748997 7749100 -77946654 + MIR3 SINE MIR 11 122 -86 330 45 0 0 chr15 7749623 7749667 -77946087 + (CA)n Simple_repeat Simple_repeat 2 45 0 1720 113 12 4 chr15 7749910 7750157 -77945597 + AluSx SINE Alu 52 300 -12 2200 133 113 18 chr15 7750454 7750845 -77944909 - MSTA LTR MaLR 0 428 1 251 318 182 10 chr15 7750854 7751150 -77944604 - L2 LINE L2 -348 2966 2620 221 346 37 21 chr15 7751330 7751518 -77944236 - L2 LINE L2 -1320 1994 1804 422 157 12 0 chr15 7751520 7751603 -77944151 + (TG)n Simple_repeat Simple_repeat 1 84 0 214 293 73 49 chr15 7752075 7752198 -77943556 - L2 LINE L2 -2141 1173 1048 428 276 285 12 chr15 7752278 7752706 -77943048 - L2 LINE L2 -340 2974 2430 532 328 48 20 chr15 7753047 7753464 -77942290 + L2 LINE L2 2654 3083 -189 336 48 0 0 chr15 7753591 7753633 -77942121 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 301 336 132 7 chr15 7754092 7754315 -77941439 - MIR SINE MIR -6 256 4 3599 165 60 172 chr15 7754432 7754674 -77941080 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 7754674 7754699 -77941055 + (CA)n Simple_repeat Simple_repeat 2 26 0 3599 165 60 172 chr15 7754699 7754722 -77941032 + L1MB7 LINE L1 4255 4279 -1899 2297 129 0 0 chr15 7754722 7755033 -77940721 + AluSx SINE Alu 1 311 -1 3599 165 60 172 chr15 7755033 7755427 -77940327 + L1MB7 LINE L1 4279 4716 -1462 2004 148 7 0 chr15 7755427 7755731 -77940023 + AluJb SINE Alu 1 306 -6 3599 165 60 172 chr15 7755731 7756061 -77939693 + L1MB7 LINE L1 4716 5081 -1097 1176 190 5 0 chr15 7756061 7756256 -77939498 + AluJb SINE Alu 96 291 -21 3599 165 60 172 chr15 7756256 7756460 -77939294 + L1MB7 LINE L1 5081 5154 -1024 2291 111 0 10 chr15 7756460 7756766 -77938988 + AluSq SINE Alu 1 303 -10 3599 165 60 172 chr15 7756766 7757078 -77938676 + L1MB7 LINE L1 5154 5499 -679 * 5702 33 0 0 chr15 7757075 7757775 -77937979 - L1PA4 LINE L1 -1441 4705 4006 7316 28 3 1 chr15 7757775 7759203 -77936551 + L1PA4 LINE L1 4702 6155 0 2975 137 61 78 chr15 7759205 7759509 -77936245 + L1MB7 LINE L1 5494 5802 -382 1910 153 7 0 chr15 7759509 7759803 -77935951 + AluJo SINE Alu 1 296 -16 2975 137 61 78 chr15 7759803 7760201 -77935553 + L1MB7 LINE L1 5802 6184 0 183 219 49 0 chr15 7760810 7760851 -77934903 - L2 LINE L2 -6 3307 3265 390 243 29 10 chr15 7761027 7761145 -77934609 + L1ME LINE L1 5714 5823 -304 664 293 60 0 chr15 7761742 7761957 -77933797 + MIR SINE MIR 5 232 -30 313 183 11 53 chr15 7761969 7762062 -77933692 - FRAM SINE Alu -68 98 41 238 189 0 0 chr15 7762089 7762126 -77933628 - Alu SINE Alu -12 121 85 1627 175 3 21 chr15 7763328 7763613 -77932141 + AluJo SINE Alu 10 289 -23 292 251 24 20 chr15 7763665 7763766 -77931988 + MIR3 SINE MIR 69 170 -38 348 24 0 0 chr15 7765775 7765816 -77929938 + (CA)n Simple_repeat Simple_repeat 1 41 0 1026 217 90 32 chr15 7868306 7868583 -77827171 - MLT1E1 LTR MaLR -9 584 292 618 221 231 5 chr15 7868596 7868791 -77826963 - MER70A LTR ERVL -1 471 233 2155 181 98 65 chr15 7868891 7869139 -77826615 - L1MDa LINE L1 -4423 2117 1879 2196 136 3 3 chr15 7869139 7869441 -77826313 + AluSx SINE Alu 1 302 -10 2155 181 98 65 chr15 7869441 7869721 -77826033 - L1MDa LINE L1 -4661 1879 1564 2495 58 0 23 chr15 7869721 7870030 -77825724 - AluY SINE Alu -9 302 1 2155 181 98 65 chr15 7870030 7870113 -77825641 - L1MDa LINE L1 -4976 1564 1485 1994 183 68 8 chr15 7870859 7871257 -77824497 + MER95 LTR ERV 10 431 0 1537 254 81 22 chr15 7871697 7872242 -77823512 + L1ME3A LINE L1 5052 5563 -607 1144 210 75 42 chr15 7872242 7872575 -77823179 - MER2 DNA MER2_type 0 344 1 1537 254 81 22 chr15 7872575 7872675 -77823079 + L1ME3A LINE L1 5563 5656 -514 1359 205 27 102 chr15 7872675 7873079 -77822675 + MLT1A2 LTR MaLR 1 374 0 1537 254 81 22 chr15 7873079 7873262 -77822492 + L1ME3A LINE L1 5656 5924 -246 352 178 55 27 chr15 7873398 7873471 -77822283 - MER70A LTR ERVL -383 89 15 1448 167 42 14 chr15 7873671 7873958 -77821796 - MLT1E1 LTR MaLR -359 295 1 2180 141 0 0 chr15 7874158 7874462 -77821292 - AluSx SINE Alu -8 304 1 804 228 61 88 chr15 7877384 7877713 -77818041 + MLT2D LTR ERVL 47 366 -48 3386 109 56 8 chr15 7877790 7878323 -77817431 - Tigger3(Golem) DNA MER2_type 0 3029 2471 646 293 78 57 chr15 7878437 7878949 -77816805 - HAL1b LINE L1 -809 539 17 1780 152 4 4 chr15 7880151 7880427 -77815327 - AluJb SINE Alu -36 276 1 1801 199 11 16 chr15 7881693 7882060 -77813694 - MLT1A1 LTR MaLR 0 365 1 2360 265 50 4 chr15 7882210 7882946 -77812808 - L1M4 LINE L1 -3013 3133 2364 2635 175 49 35 chr15 7883058 7883110 -77812644 + L1MB7 LINE L1 5437 5487 -697 2532 60 0 3 chr15 7883110 7883408 -77812346 + AluY SINE Alu 1 297 -14 2635 175 49 35 chr15 7883408 7883931 -77811823 + L1MB7 LINE L1 5487 6020 -164 625 178 6 89 chr15 7883958 7884138 -77811616 - FRAM SINE Alu -11 165 1 522 220 78 0 chr15 7884140 7884281 -77811473 + L1MB8 LINE L1 6022 6173 -5 289 186 0 36 chr15 7884368 7884435 -77811319 - L1M3 LINE L1 -580 5603 5541 415 329 72 50 chr15 7884439 7884856 -77810898 + HAL1b LINE L1 351 776 -572 2262 114 0 0 chr15 7885170 7885467 -77810287 + AluSx SINE Alu 3 299 -13 279 276 9 9 chr15 7885524 7885629 -77810125 + L1 LINE L1 2148 2252 -3894 350 297 84 88 chr15 7885750 7886013 -77809741 + L1 LINE L1 2270 2531 -3615 2311 91 0 0 chr15 7886045 7886341 -77809413 - AluY SINE Alu -15 296 1 321 232 0 14 chr15 7886493 7886562 -77809192 - MLT2C2 LTR ERVL -396 68 1 9573 160 50 56 chr15 7886562 7888222 -77807532 - ERVL-C2 LTR ERVL -8 5756 4108 2153 77 0 3 chr15 7888222 7888508 -77807246 - AluSg SINE Alu -25 285 1 9573 160 50 56 chr15 7888508 7888781 -77806973 - ERVL-C2 LTR ERVL -1656 4108 3835 207 0 0 0 chr15 7888787 7888810 -77806944 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 227 0 0 chr15 7888815 7888903 -77806851 + G-rich Low_complexity Low_complexity 1 88 0 1620 197 49 12 chr15 7888903 7889248 -77806506 - MLT2D LTR ERVL -36 378 21 483 162 20 10 chr15 7889256 7889355 -77806399 - L1MEc LINE L1 -2352 3863 3764 * 1470 243 33 27 chr15 7889354 7889934 -77805820 - L1M4 LINE L1 -2985 3161 2110 1137 268 22 8 chr15 7890041 7890407 -77805347 - L1MEc LINE L1 -3353 2862 2492 286 235 25 12 chr15 7890436 7890517 -77805237 - L1MEc LINE L1 -4699 1697 1616 1279 302 66 30 chr15 7890605 7891586 -77804168 - L1MEd LINE L1 -2990 3139 2123 1374 281 112 35 chr15 7891932 7893249 -77802505 - L1MEd LINE L1 -4584 1726 276 374 196 59 23 chr15 7893911 7894083 -77801671 - MER5C DNA MER1_type 0 324 57 920 268 33 0 chr15 7894316 7894559 -77801195 - MIR SINE MIR -4 258 8 237 238 71 40 chr15 7894632 7894758 -77800996 + MER117 DNA MER1_type 18 147 -50 30700 93 15 7 chr15 7895119 7899751 -77796003 - L1P3 LINE L1 -557 5597 928 307 277 90 17 chr15 7899851 7900060 -77795694 - L1MC4 LINE L1 -135 7739 7462 351 182 0 15 chr15 7900988 7901054 -77794700 + MIR SINE MIR 87 151 -111 341 314 116 25 chr15 7901114 7901356 -77794398 - MLT1L LTR MaLR -38 577 314 225 224 134 67 chr15 7901435 7901614 -77794140 - MLT1L LTR MaLR -424 191 1 1843 149 53 0 chr15 7902471 7902906 -77792848 - L1MA4A LINE L1 -23 6280 5762 527 196 39 73 chr15 7903321 7903500 -77792254 - HAL1 LINE L1 -662 1845 1673 2415 64 0 13 chr15 7903538 7903849 -77791905 + AluY SINE Alu 1 307 -4 944 186 54 50 chr15 7903928 7904030 -77791724 - L1ME LINE L1 -450 6108 6008 2088 121 55 28 chr15 7904030 7904394 -77791360 - THE1C LTR MaLR -1 374 1 944 186 54 50 chr15 7904394 7904512 -77791242 - L1ME LINE L1 -550 6008 5887 2544 213 53 13 chr15 7904512 7904529 -77791225 - L1ME LINE L1 -1801 4739 4724 1238 218 0 36 chr15 7904529 7904777 -77790977 - MER8 DNA MER2_type 0 239 1 2544 213 53 13 chr15 7904777 7905435 -77790319 - L1ME LINE L1 -1816 4724 4037 940 198 37 29 chr15 7905466 7905708 -77790046 - L1ME LINE L1 -4150 2390 2147 7850 105 4 3 chr15 7905808 7906868 -77788886 - L1P3 LINE L1 -5394 1067 7 210 148 93 0 chr15 7907135 7907189 -77788565 + L2 LINE L2 2475 2533 -781 2346 240 45 22 chr15 7907526 7907848 -77787906 + L1ME3 LINE L1 4882 5195 -969 1666 190 0 10 chr15 7907848 7908153 -77787601 + AluJb SINE Alu 1 302 -10 2346 240 45 22 chr15 7908153 7908875 -77786879 + L1ME3 LINE L1 5195 5942 -222 1822 213 81 86 chr15 7908880 7909482 -77786272 + MLT1E2 LTR MaLR 1 600 -25 343 213 75 94 chr15 7909496 7909656 -77786098 + L1ME3 LINE L1 5991 6147 -15 * 648 160 10 2 chr15 7909640 7909779 -77785975 + L1MA4 LINE L1 5791 5930 -244 285 306 62 50 chr15 7909790 7910079 -77785675 + L2 LINE L2 2723 3077 -236 1043 210 63 60 chr15 7911514 7911832 -77783922 + LTR55 LTR ERV 1 319 -229 259 196 0 0 chr15 7911832 7911878 -77783876 - MLT2C1 LTR ERVL 0 397 352 2340 139 106 24 chr15 7911890 7912176 -77783578 + Tigger3b DNA MER2_type 1 262 -2766 549 80 0 0 chr15 7912176 7912251 -77783503 + (TA)n Simple_repeat Simple_repeat 1 75 0 2324 79 7 0 chr15 7912251 7912555 -77783199 - AluY SINE Alu -5 306 1 2340 139 106 24 chr15 7912555 7912690 -77783064 + Tigger3b DNA MER2_type 261 458 -773 9232 197 11 14 chr15 7912790 7914303 -77781451 - L1 LINE L1 -1862 4284 2768 2438 52 0 26 chr15 7914303 7914613 -77781141 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 7914613 7914638 -77781116 + (TA)n Simple_repeat Simple_repeat 1 25 0 9232 197 11 14 chr15 7914638 7915099 -77780655 - L1 LINE L1 -3376 2770 2315 2025 209 111 3 chr15 7915093 7916499 -77779255 - L1PBa LINE L1 -5159 1704 2 * 331 200 0 0 chr15 7916556 7916611 -77779143 + Tigger5 DNA MER2_type 1 55 -2268 385 203 0 0 chr15 7916613 7916682 -77779072 + Tigger5 DNA MER2_type 2255 2323 0 364 253 81 58 chr15 7916797 7916971 -77778783 - L1ME LINE L1 -5077 993 816 2202 92 14 0 chr15 7916971 7917265 -77778489 - AluSc SINE Alu -11 298 1 21 0 0 0 chr15 7917286 7917307 -77778447 + AT_rich Low_complexity Low_complexity 1 21 0 1734 140 4 0 chr15 7917312 7917569 -77778185 - Tigger3(Golem) DNA MER2_type -1 3028 2771 544 178 0 0 chr15 7917566 7917656 -77778098 - Tigger3(Golem) DNA MER2_type -2887 142 53 * 464 283 94 11 chr15 7918211 7918391 -77777363 - LTR33 LTR ERVL -322 199 5 1936 150 17 0 chr15 7919593 7919893 -77775861 + AluJb SINE Alu 1 305 -7 267 313 61 17 chr15 7921388 7921503 -77774251 - L2 LINE L2 -22 3291 3172 936 279 89 81 chr15 7921669 7922642 -77773112 - L2 LINE L2 -420 2894 1914 229 271 144 8 chr15 7923118 7923236 -77772518 + MIR SINE MIR 117 250 -12 2506 139 50 5 chr15 7923409 7923812 -77771942 - MSTB LTR MaLR -5 421 1 202 285 112 89 chr15 7925080 7925427 -77770327 - L2 LINE L2 -82 3190 2836 251 232 73 12 chr15 7927145 7927227 -77768527 + L2 LINE L2 2683 2769 -545 261 247 32 75 chr15 7927494 7927587 -77768167 + L2 LINE L2 3183 3271 -42 273 98 0 0 chr15 7927592 7927633 -77768121 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 284 280 42 17 chr15 7931258 7931376 -77764378 + LTR33 LTR ERVL 401 521 0 356 200 75 13 chr15 7932136 7932216 -77763538 - MIR SINE MIR -56 152 67 232 171 45 11 chr15 7932875 7932963 -77762791 + (CA)n Simple_repeat Simple_repeat 2 92 0 301 270 35 26 chr15 7932966 7933081 -77762673 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 188 178 0 22 chr15 7933082 7933127 -77762627 + (CA)n Simple_repeat Simple_repeat 1 44 0 449 251 34 23 chr15 7933185 7933360 -77762394 + (CATA)n Simple_repeat Simple_repeat 4 180 0 201 259 0 28 chr15 7933372 7933480 -77762274 + (CA)n Simple_repeat Simple_repeat 1 105 0 234 116 0 0 chr15 7935389 7935432 -77760322 + (CA)n Simple_repeat Simple_repeat 1 43 0 370 173 95 19 chr15 7935640 7935746 -77760008 - FLAM SINE Alu -2 131 66 1485 258 37 52 chr15 7935752 7936314 -77759440 + MER74B LTR ERVL 69 622 0 875 199 86 0 chr15 7936314 7936500 -77759254 - MER58A DNA MER1_type -4 220 19 326 349 98 34 chr15 7937770 7938005 -77757749 + HAL1 LINE L1 1455 1704 -803 497 309 19 40 chr15 7938327 7938703 -77757051 + L1ME4a LINE L1 2155 2522 -3624 355 315 59 31 chr15 7938825 7939190 -77756564 + L1ME4a LINE L1 4100 4616 -1530 23 33 0 0 chr15 7939499 7939529 -77756225 + AT_rich Low_complexity Low_complexity 1 30 0 2581 69 3 0 chr15 7939531 7939835 -77755919 + AluY SINE Alu 1 305 -6 225 248 28 9 chr15 7940032 7940141 -77755613 + L1ME4a LINE L1 5283 5393 -753 2694 113 23 57 chr15 7940194 7940635 -77755119 + MSTB LTR MaLR 1 426 0 9022 152 38 15 chr15 7940653 7942230 -77753524 + MSTB-int LTR MaLR 37 1650 -1 2589 160 9 21 chr15 7942231 7942662 -77753092 + MSTB LTR MaLR 1 426 0 302 291 92 78 chr15 7942727 7943033 -77752721 + L1ME4a LINE L1 5578 5887 -234 290 249 55 73 chr15 7943081 7943246 -77752508 + L1ME4a LINE L1 5960 6121 0 397 349 62 19 chr15 7943248 7943506 -77752248 + L3 LINE CR1 1110 1378 -199 411 21 0 0 chr15 7944059 7944107 -77751647 + (CA)n Simple_repeat Simple_repeat 1 48 0 1195 123 0 27 chr15 7944581 7944800 -77750954 + L1MA4 LINE L1 6078 6290 -10 26 0 0 0 chr15 7944825 7944851 -77750903 + AT_rich Low_complexity Low_complexity 1 26 0 403 363 71 8 chr15 7945064 7945304 -77750450 + MIR SINE MIR 8 262 0 2137 155 0 0 chr15 7945604 7945914 -77749840 + AluSx SINE Alu 1 310 -2 534 357 32 47 chr15 7946022 7946624 -77749130 + L1MEc LINE L1 1948 2489 -3726 1856 193 22 29 chr15 7946635 7947044 -77748710 + MER74A LTR ERVL 1 406 -152 381 239 101 14 chr15 7947213 7947351 -77748403 + MER74B LTR ERVL 473 622 0 842 293 53 20 chr15 7947491 7947846 -77747908 - MLT1I LTR MaLR -33 376 10 2151 109 25 41 chr15 7948001 7948721 -77747033 + MER4A LTR ERV1 1 779 0 4563 147 17 40 chr15 7948784 7949660 -77746094 + MER4D LTR ERV1 2 857 -46 8000 104 24 36 chr15 7949781 7951037 -77744717 - THE1B-int LTR MaLR -336 1244 4 2385 125 25 0 chr15 7951037 7951390 -77744364 - THE1B LTR MaLR -2 362 1 2174 128 31 31 chr15 7952025 7952383 -77743371 + THE1B LTR MaLR 1 358 -6 235 259 0 0 chr15 7954329 7954383 -77741371 + (TA)n Simple_repeat Simple_repeat 1 54 0 343 299 84 13 chr15 7955066 7955220 -77740534 + MIR3 SINE MIR 7 171 -37 1287 291 217 15 chr15 7955375 7955964 -77739790 + L2 LINE L2 1976 2445 -868 2367 82 3 16 chr15 7955964 7956268 -77739486 + AluSg SINE Alu 1 300 -10 1287 291 217 15 chr15 7956268 7956591 -77739163 + L2 LINE L2 2445 3068 -245 824 262 32 41 chr15 7956591 7956935 -77738819 + L1ME3A LINE L1 5611 5951 -219 349 207 157 41 chr15 7957235 7957412 -77738342 - MLT1J1 LTR MaLR -51 460 207 326 306 19 0 chr15 7957608 7957716 -77738038 - MLT1J2 LTR MaLR -340 110 1 416 305 67 63 chr15 7957722 7957896 -77737858 + L1ME4a LINE L1 5877 6054 -67 1806 158 10 29 chr15 7957896 7958206 -77737548 - AluJb SINE Alu -4 308 5 416 305 67 63 chr15 7958206 7958254 -77737500 + L1ME4a LINE L1 6054 6100 -21 1913 178 138 10 chr15 7958793 7959198 -77736556 + LTR32 LTR ERVL 15 471 0 2139 128 20 0 chr15 7959643 7959940 -77735814 + AluSx SINE Alu 1 303 -9 2281 58 3 88 chr15 7959942 7960272 -77735482 + AluY SINE Alu 1 302 -9 213 94 0 0 chr15 7960463 7960495 -77735259 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1724 267 57 25 chr15 7960751 7961473 -77734281 + L1MC3 LINE L1 5856 6600 -1185 1565 181 45 3 chr15 7961532 7961846 -77733908 + MSTB LTR MaLR 98 424 -2 720 205 19 0 chr15 7961849 7962005 -77733749 + L1MC3 LINE L1 6616 6774 -1011 363 288 107 0 chr15 7963104 7963281 -77732473 - L1MC/D LINE L1 -2010 5798 5603 573 262 48 32 chr15 7963737 7964066 -77731688 + L1M4b LINE L1 -254 119 -6165 1493 137 46 76 chr15 7964123 7964452 -77731302 + MER2 DNA MER2_type 25 343 -2 1518 185 82 142 chr15 7964455 7965686 -77730068 + L1M4b LINE L1 377 1478 -4906 195 42 0 0 chr15 7965686 7965710 -77730044 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1518 185 82 142 chr15 7965710 7965821 -77729933 + L1M4b LINE L1 1478 1594 -4790 2397 98 0 0 chr15 7965823 7966119 -77729635 + AluSx SINE Alu 1 296 -16 260 210 0 0 chr15 7967767 7967829 -77727925 + A-rich Low_complexity Low_complexity 1 62 0 829 155 8 0 chr15 7967866 7967995 -77727759 + FLAM_C SINE Alu 1 130 -13 344 249 38 121 chr15 7968003 7968349 -77727405 + L1M4b LINE L1 1645 2112 -4451 367 336 28 65 chr15 7968379 7968626 -77727128 + L1MEc LINE L1 1734 1971 -4425 197 161 0 0 chr15 7969564 7969595 -77726159 - L2 LINE L2 -18 3254 3224 197 246 92 0 chr15 7969597 7969662 -77726092 - MIR SINE MIR -92 170 100 1771 197 101 5 chr15 7969662 7970099 -77725655 - MLT2B1 LTR ERVL 0 520 42 3774 148 39 0 chr15 7970945 7971592 -77724162 - L1PB4 LINE L1 -1 6155 5484 5513 196 12 11 chr15 7971592 7972794 -77722960 - L1PB4 LINE L1 -1024 5122 3919 1166 139 0 0 chr15 7972790 7972984 -77722770 + L1PB4 LINE L1 3725 3918 -2228 * 328 278 167 17 chr15 7975442 7975622 -77720132 + L2 LINE L2 3014 3220 -93 182 71 0 71 chr15 7979092 7979134 -77716620 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 281 129 0 32 chr15 7979637 7979699 -77716055 + (CCG)n Simple_repeat Simple_repeat 3 62 0 42 71 0 0 chr15 7979781 7979865 -77715889 + GC_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr15 7980041 7980062 -77715692 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 7980090 7980146 -77715608 + GC_rich Low_complexity Low_complexity 1 56 0 2393 101 0 3 chr15 7980562 7980869 -77714885 + AluSx SINE Alu 1 306 -6 377 322 55 39 chr15 7980869 7981113 -77714641 + L1MEc LINE L1 2728 2978 -3237 365 214 43 43 chr15 7981812 7981929 -77713825 + MLT1G1 LTR MaLR 477 593 -2 242 237 53 79 chr15 7982018 7982132 -77713622 + MIR SINE MIR 134 244 -18 1599 137 63 3 chr15 7982277 7982562 -77713192 + AluJo SINE Alu 1 302 -10 1885 68 129 4 chr15 7982563 7982827 -77712927 + AluSg1 SINE Alu 1 297 -12 1416 104 62 78 chr15 7983771 7983820 -77711934 + L1MA8 LINE L1 5988 6036 -255 2526 62 7 0 chr15 7983820 7984124 -77711630 + AluSp SINE Alu 1 306 -7 1416 104 62 78 chr15 7984124 7984383 -77711371 + L1MA8 LINE L1 6036 6291 0 1174 182 146 3 chr15 7984991 7985323 -77710431 - MER47B DNA MER2_type -1 417 1 181 158 70 70 chr15 7985548 7985605 -77710149 + MIR SINE MIR 19 75 -133 295 286 107 58 chr15 7985704 7985910 -77709844 + MLT1K LTR MaLR 329 544 -44 201 113 16 32 chr15 7986367 7986429 -77709325 + (CGCGG)n Simple_repeat Simple_repeat 4 64 0 25 0 0 0 chr15 7988612 7988637 -77707117 + AT_rich Low_complexity Low_complexity 1 25 0 1496 226 54 41 chr15 7991566 7992030 -77703724 + L2 LINE L2 2843 3312 -1 1980 89 25 70 chr15 7994479 7994806 -77700948 - AluSx SINE Alu 0 312 1 2164 122 44 33 chr15 7994883 7995243 -77700511 - THE1B LTR MaLR 0 364 1 249 325 13 13 chr15 7995668 7995745 -77700009 - MIR SINE MIR -185 77 1 235 241 19 0 chr15 7996125 7996179 -77699575 + MIR SINE MIR 87 141 -67 619 273 171 24 chr15 7996238 7996572 -77699182 - LTR50 LTR ERVL -26 769 387 2847 276 86 56 chr15 7996761 7998288 -77697466 - ERVL LTR ERVL -321 5443 3871 1044 159 17 82 chr15 7998291 7998399 -77697355 - MER20 DNA MER1_type 0 219 132 2774 175 35 14 chr15 7998399 7998908 -77696846 + MLT2B1 LTR ERVL 1 520 0 1044 159 17 82 chr15 7998908 7999032 -77696722 - MER20 DNA MER1_type -87 132 2 1161 336 90 5 chr15 7999048 7999690 -77696064 - ERVL LTR ERVL -1904 3860 3164 4958 123 54 26 chr15 7999943 8000991 -77694763 + MER52C LTR ERV1 1 1278 0 1512 301 62 53 chr15 8000998 8001271 -77694483 - ERVL LTR ERVL -2944 2820 2551 2173 111 0 0 chr15 8001271 8001569 -77694185 + AluSx SINE Alu 1 298 -14 1512 301 62 53 chr15 8001569 8002157 -77693597 - ERVL LTR ERVL -3213 2551 1952 1724 249 89 31 chr15 8002455 8002930 -77692824 - L1ME2 LINE L1 -9 6155 5638 1400 118 107 48 chr15 8002930 8003075 -77692679 + AluSx SINE Alu 1 136 -176 2142 89 3 3 chr15 8003075 8003367 -77692387 + AluSg1 SINE Alu 1 292 -17 1400 118 107 48 chr15 8003367 8003510 -77692244 + AluSx SINE Alu 136 306 -6 1724 249 89 31 chr15 8003510 8003621 -77692133 - L1ME2 LINE L1 -526 5638 5535 194 310 70 10 chr15 8004318 8004418 -77691336 - L2 LINE L2 -3 3269 3164 212 284 91 11 chr15 8004603 8004691 -77691063 - MIR SINE MIR -140 122 28 2767 160 67 24 chr15 8005841 8006355 -77689399 - MER21A LTR ERV1 0 931 272 2536 55 0 0 chr15 8006355 8006664 -77689090 - AluY SINE Alu -2 309 1 2767 160 67 24 chr15 8006664 8006949 -77688805 - MER21A LTR ERV1 -659 272 1 23 0 0 0 chr15 8007090 8007113 -77688641 + AT_rich Low_complexity Low_complexity 1 23 0 1644 153 122 68 chr15 8007463 8007874 -77687880 - LTR12 LTR ERV1 -229 485 53 267 231 0 0 chr15 8007874 8007926 -77687828 - LTR30 LTR ERV1 -670 52 1 1546 262 53 31 chr15 8008007 8008375 -77687379 - LTR19-int LTR ERV1 -3744 3152 2769 2264 63 0 13 chr15 8008375 8008674 -77687080 - AluY SINE Alu -15 296 2 1546 262 53 31 chr15 8008674 8008794 -77686960 - LTR19-int LTR ERV1 -4127 2769 2653 622 148 142 6 chr15 8008984 8009153 -77686601 - LTR19-int LTR ERV1 -2321 3265 3074 2184 88 0 7 chr15 8009316 8009611 -77686143 - AluSc SINE Alu -16 293 1 305 273 118 0 chr15 8009679 8009789 -77685965 + MER94 DNA DNA 12 134 0 4260 148 19 3 chr15 8010523 8011191 -77684563 + MER54B LTR ERVL 4 682 -111 797 232 0 4 chr15 8011736 8012018 -77683736 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 588 212 11 6 chr15 8012043 8012222 -77683532 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 250 286 18 0 chr15 8012289 8012345 -77683409 + L2 LINE L2 3246 3302 -11 385 230 147 9 chr15 8013163 8013340 -77682414 + L1MC4a LINE L1 6441 6604 -1204 1567 238 86 52 chr15 8013394 8013452 -77682302 + L1MC4 LINE L1 6870 6925 -1117 1920 149 10 0 chr15 8013452 8013761 -77681993 + AluJo SINE Alu 1 312 0 1567 238 86 52 chr15 8013761 8014548 -77681206 + L1MC4 LINE L1 6925 7902 -140 1372 105 0 11 chr15 8014632 8014822 -77680932 + AluSq SINE Alu 1 188 -125 4065 115 3 2 chr15 8014823 8015413 -77680341 + LTR10C LTR ERV1 1 591 0 563 332 103 19 chr15 8015415 8015677 -77680077 + LTR10C-int LTR ERV1 6 289 -6360 271 200 93 53 chr15 8015940 8016015 -77679739 + LTR10C-int LTR ERV1 528 605 -6044 320 209 55 66 chr15 8016016 8016107 -77679647 + L1MC4 LINE L1 6613 6702 -1340 208 175 25 0 chr15 8016108 8016148 -77679606 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 322 253 0 74 chr15 8016157 8016252 -77679502 + L1MC4 LINE L1 6615 6702 -1340 312 286 0 33 chr15 8016273 8016364 -77679390 + L1MC4 LINE L1 6615 6702 -1340 308 300 22 11 chr15 8016396 8016486 -77679268 + L1MC4 LINE L1 6614 6704 -1338 320 217 22 60 chr15 8016499 8016640 -77679114 + L1MC4 LINE L1 6558 6646 -1139 307 235 0 98 chr15 8016588 8016690 -77679064 - L1MC4 LINE L1 -1339 6703 6612 * 312 242 33 55 chr15 8016655 8016746 -77679008 + L1MC4 LINE L1 6614 6702 -1340 301 258 11 54 chr15 8016753 8016846 -77678908 + L1MC4 LINE L1 6614 6702 -1340 294 148 0 37 chr15 8016847 8016928 -77678826 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 340 223 32 64 chr15 8016928 8017022 -77678732 + L1MC4 LINE L1 6614 6704 -1338 224 301 0 0 chr15 8017484 8017557 -77678197 + A-rich Low_complexity Low_complexity 1 73 0 328 120 189 74 chr15 8017570 8017745 -77678009 + HERVKC4 LTR ERVK 2609 2803 -2459 * 2132 131 64 43 chr15 8017635 8017916 -77677838 + Harlequin LTR ERV1 1896 2170 -4726 2141 96 3 3 chr15 8017916 8018208 -77677546 + AluY SINE Alu 1 292 -19 2132 131 64 43 chr15 8018208 8018489 -77677265 + Harlequin LTR ERV1 2170 2470 -4426 473 306 19 0 chr15 8018716 8018873 -77676881 + L1MCc LINE L1 264 423 -6000 268 288 14 0 chr15 8018977 8019050 -77676704 - L1MCc LINE L1 -5507 916 843 2573 253 59 49 chr15 8019067 8020396 -77675358 + L1MCc LINE L1 1192 2507 -4615 2112 111 3 16 chr15 8020396 8020703 -77675051 + AluSx SINE Alu 1 303 -9 2573 253 59 49 chr15 8020703 8021031 -77674723 + L1MCc LINE L1 2507 2830 -4292 1470 129 37 0 chr15 8021031 8021248 -77674506 + AluSx SINE Alu 1 225 -87 2573 253 59 49 chr15 8021248 8021348 -77674406 + L1MCc LINE L1 2830 3177 -3945 1987 132 3 3 chr15 8022125 8022420 -77673334 - AluSx SINE Alu -17 295 1 223 232 214 36 chr15 8022700 8022812 -77672942 + MIR SINE MIR 119 250 -12 888 256 156 14 chr15 8022965 8023325 -77672429 + MER20B DNA MER1_type 350 760 -23 215 111 56 0 chr15 8025872 8025908 -77669846 - MER91B DNA MER1_type -129 61 24 777 245 21 21 chr15 8026015 8026203 -77669551 - MER58A DNA MER1_type 0 224 37 274 364 26 7 chr15 8027932 8028086 -77667668 + MIR SINE MIR 92 248 -14 480 113 0 113 chr15 8029738 8029844 -77665910 - AluSg/x SINE Alu -1 308 215 3611 130 37 0 chr15 8029844 8030414 -77665340 - LTR10C LTR ERV1 0 591 1 2642 303 65 28 chr15 8030459 8030619 -77665135 - HERVI LTR ERV1 -79 7706 7553 2317 52 38 0 chr15 8030619 8030908 -77664846 - AluY SINE Alu -11 300 1 2642 303 65 28 chr15 8030908 8031936 -77663818 - HERVI LTR ERV1 -232 7553 6474 4578 146 21 8 chr15 8032039 8032697 -77663057 + L1P LINE L1 3917 4588 -1558 2760 93 3 11 chr15 8032697 8033064 -77662690 + THE1B LTR MaLR 1 364 0 4578 146 21 8 chr15 8033064 8033181 -77662573 + L1P LINE L1 4588 4702 -1444 360 346 23 8 chr15 8033299 8033429 -77662325 + GA-rich Low_complexity Low_complexity 5 136 0 1096 100 0 17 chr15 8033430 8033610 -77662144 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 11608 24 1 1 chr15 8034535 8035886 -77659868 + L1P LINE L1 3537 4888 -1258 6506 103 1 15 chr15 8035986 8036989 -77658765 + L1P LINE L1 2529 3517 -2629 2506 258 74 14 chr15 8038701 8039638 -77656116 + L1M1 LINE L1 2262 3254 -4311 526 157 11 0 chr15 8039632 8039721 -77656033 + L1PBa LINE L1 1 90 -6773 * 289 343 124 29 chr15 8039832 8040243 -77655511 - L2 LINE L2 -19 3253 2804 238 374 131 14 chr15 8040361 8040711 -77655043 - L2 LINE L2 -645 2669 2279 1170 113 0 6 chr15 8041158 8041326 -77654428 - AluSg/x SINE Alu -8 302 136 233 160 0 20 chr15 8041378 8041428 -77654326 + A-rich Low_complexity Low_complexity 2 50 0 1757 156 96 28 chr15 8041670 8042023 -77653731 - MLT1B LTR MaLR -11 379 3 1477 189 84 112 chr15 8042027 8042452 -77653302 + LTR8 LTR ERV1 4 375 -316 527 159 9 28 chr15 8043090 8043197 -77652557 - MER53 DNA DNA -82 107 3 2988 80 0 3 chr15 8044070 8044446 -77651308 - THE1C LTR MaLR 0 375 1 5878 103 4 9 chr15 8044446 8045254 -77650500 - THE1C-int LTR MaLR 0 1580 777 716 268 59 75 chr15 8045836 8046280 -77649474 + MLT1J LTR MaLR 24 511 0 5641 61 12 10 chr15 8046545 8047265 -77648489 - Harlequin LTR ERV1 -5912 984 263 2097 107 20 57 chr15 8047245 8047599 -77648155 - Harlequin LTR ERV1 -6497 399 59 * 2494 50 0 7 chr15 8047771 8048070 -77647684 + AluY SINE Alu 2 298 -13 1294 147 14 9 chr15 8048090 8048301 -77647453 + AluJb SINE Alu 85 296 -16 2105 112 0 10 chr15 8048603 8048907 -77646847 - AluSx SINE Alu -11 301 1 1354 209 0 0 chr15 8049240 8049498 -77646256 - L1PB4 LINE L1 -12 6144 5887 1095 203 16 32 chr15 8050199 8050280 -77645474 + L1 LINE L1 4476 4557 -1589 2357 77 27 0 chr15 8050280 8050578 -77645176 + AluSp SINE Alu 1 306 -7 1095 203 16 32 chr15 8050578 8050747 -77645007 + L1 LINE L1 4557 4722 -1424 13947 53 3 14 chr15 8050858 8052562 -77643192 - Harlequin LTR ERV1 -2517 4379 2693 2676 77 0 0 chr15 8054114 8054451 -77641303 - L1MA2 LINE L1 -370 5934 5598 2107 92 7 50 chr15 8054454 8054787 -77640967 - AluSx SINE Alu 0 312 1 378 229 31 0 chr15 8054949 8055045 -77640709 - MER103 DNA DNA -9 157 59 706 207 94 48 chr15 8055146 8055510 -77640244 + MLT1C LTR MaLR 5 458 -9 1805 77 28 4 chr15 8055896 8056144 -77639610 + L1PA13 LINE L1 5908 6161 -2 1112 146 131 16 chr15 8056214 8056485 -77639269 + MSTA LTR MaLR 91 428 0 183 244 44 0 chr15 8056923 8056968 -77638786 + MIR SINE MIR 72 118 -90 213 39 0 0 chr15 8057647 8057673 -77638081 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3799 107 23 12 chr15 8059669 8059858 -77635896 + LTR43 LTR ERV1 25 211 -391 1881 128 7 7 chr15 8059858 8060140 -77635614 + AluSx SINE Alu 16 297 -15 3799 107 23 12 chr15 8060140 8060521 -77635233 + LTR43 LTR ERV1 211 601 -1 441 246 159 34 chr15 8060791 8061055 -77634699 - L1MCa LINE L1 -2572 3854 3558 2242 252 59 25 chr15 8061064 8061268 -77634486 - L1MCa LINE L1 -3599 2827 2631 396 0 0 0 chr15 8061268 8061312 -77634442 + (TG)n Simple_repeat Simple_repeat 2 45 0 2242 252 59 25 chr15 8061312 8062234 -77633520 - L1MCa LINE L1 -3795 2631 1516 253 288 91 15 chr15 8062386 8062518 -77633236 + MIR SINE MIR 12 153 -109 398 257 176 93 chr15 8062527 8062935 -77632819 - LTR67 LTR ERVL -2 555 114 3611 232 66 28 chr15 8063625 8064504 -77631250 + L1MEc LINE L1 1856 2774 -3441 2464 158 11 34 chr15 8064504 8064946 -77630808 + MSTB1 LTR MaLR 1 432 0 3611 232 66 28 chr15 8064946 8065489 -77630265 + L1MEc LINE L1 2774 3295 -2920 2627 223 29 51 chr15 8066185 8067184 -77628570 - L1M4c LINE L1 -4519 1794 800 745 157 45 8 chr15 8067195 8067329 -77628425 + MSTA LTR MaLR 233 371 -57 893 101 25 0 chr15 8067354 8067473 -77628281 - FLAM_C SINE Alu -11 122 1 2187 106 0 3 chr15 8068122 8068427 -77627327 - AluSx SINE Alu 0 304 1 1556 197 37 34 chr15 8068427 8068777 -77626977 - MSTD LTR MaLR -43 353 3 1270 234 55 2 chr15 8068950 8069348 -77626406 - L1M4 LINE L1 -2098 4284 3866 1228 209 41 34 chr15 8069771 8070063 -77625691 - MLT1A2 LTR MaLR -78 296 3 274 306 19 37 chr15 8070201 8070472 -77625282 + L1M4 LINE L1 2237 2502 -3644 213 39 0 0 chr15 8070872 8070898 -77624856 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1934 106 26 4 chr15 8070898 8071163 -77624591 + AluSx SINE Alu 1 271 -41 536 225 125 21 chr15 8071711 8071880 -77623874 + MLT1J1 LTR MaLR 21 204 -246 2246 106 27 0 chr15 8071881 8072182 -77623572 - AluSx SINE Alu -3 309 1 274 262 143 60 chr15 8072453 8072789 -77622965 - L2 LINE L2 -543 2771 2408 2457 84 0 0 chr15 8072858 8073154 -77622600 - AluSq SINE Alu -17 296 1 374 216 55 80 chr15 8073156 8073267 -77622487 - L1M4 LINE L1 -4790 1594 1482 203 32 65 0 chr15 8073267 8073298 -77622456 + T-rich Low_complexity Low_complexity 3 35 0 374 216 55 80 chr15 8073298 8073496 -77622258 - L1M4 LINE L1 -4902 1482 1306 475 80 13 13 chr15 8076322 8076397 -77619357 + L1PA13 LINE L1 6082 6156 -7 231 376 50 0 chr15 8077125 8077226 -77618528 + MIR SINE MIR 20 125 -137 641 169 14 21 chr15 8077472 8077614 -77618140 + L1MA4A LINE L1 5983 6123 -180 401 223 0 21 chr15 8077617 8077711 -77618043 + L1MA4A LINE L1 6189 6280 -23 184 75 25 25 chr15 8079915 8079955 -77615799 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 267 303 0 20 chr15 8080613 8080712 -77615042 - MIR3 SINE MIR -11 197 101 2223 108 0 0 chr15 8081078 8081373 -77614381 - AluSx SINE Alu -17 295 1 770 265 49 73 chr15 8082086 8082539 -77613215 + L2 LINE L2 2872 3313 0 26 0 0 0 chr15 8082546 8082572 -77613182 + AT_rich Low_complexity Low_complexity 1 26 0 694 36 0 0 chr15 8082665 8082749 -77613005 - L1PA5 LINE L1 -1 6153 6070 2351 88 3 0 chr15 8082750 8083047 -77612707 - AluSp SINE Alu -15 298 1 420 314 35 6 chr15 8083517 8083689 -77612065 - MIR SINE MIR -6 256 80 691 286 105 58 chr15 8084394 8084984 -77610770 - HAL1 LINE L1 -707 1800 1183 208 184 81 35 chr15 8085397 8085484 -77610270 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 11852 65 15 0 chr15 8085924 8087398 -77608356 + Harlequin LTR ERV1 5401 6896 0 1690 203 14 23 chr15 8087398 8087856 -77607898 + LTR2B LTR ERV1 1 490 0 1477 225 37 44 chr15 8089100 8089160 -77606594 + L1M4 LINE L1 16 75 -6467 222 37 0 0 chr15 8089160 8089187 -77606567 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1477 225 37 44 chr15 8089187 8089535 -77606219 + L1M4 LINE L1 75 421 -6121 603 240 0 0 chr15 8089560 8089685 -77606069 + L1M4 LINE L1 1085 1209 -5333 528 233 100 7 chr15 8089726 8089876 -77605878 + MER103 DNA DNA 1 164 -2 7906 19 0 4 chr15 8090035 8090979 -77604775 + L1HS LINE L1 5216 6155 0 4545 150 13 29 chr15 8090975 8091349 -77604405 + L1M4 LINE L1 1869 2248 -4396 * 1885 146 53 0 chr15 8091349 8091630 -77604124 + AluSx SINE Alu 1 296 -16 4545 150 13 29 chr15 8091630 8092104 -77603650 + L1M4 LINE L1 2248 3145 -3499 1914 71 71 0 chr15 8092590 8092829 -77602925 + AluSq SINE Alu 1 256 -57 371 201 169 58 chr15 8094361 8094500 -77601254 - MIR3 SINE MIR -43 165 31 260 154 19 0 chr15 8094786 8094838 -77600916 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 3157 80 2 88 chr15 8095026 8095526 -77600228 + LTR8 LTR ERV1 1 457 -234 607 272 96 27 chr15 8096962 8097242 -77598512 + L1ME4a LINE L1 5174 5433 -729 2266 107 0 0 chr15 8097242 8097532 -77598222 - AluSx SINE Alu -22 290 1 607 272 96 27 chr15 8097532 8097751 -77598003 + L1ME4a LINE L1 5433 5704 -458 831 174 0 0 chr15 8097754 8097886 -77597868 - AluSg/x SINE Alu -8 304 173 2036 122 14 0 chr15 8098270 8098565 -77597189 - AluSq SINE Alu -14 299 1 481 309 92 32 chr15 8099132 8099414 -77596340 + L2 LINE L2 2532 2830 -484 893 279 14 9 chr15 8099794 8100013 -77595741 - LTR16C LTR ERVL 0 491 272 260 178 22 0 chr15 8100046 8100091 -77595663 + LTR16C LTR ERVL 199 244 -247 367 191 36 20 chr15 8100228 8100378 -77595376 - L1M3 LINE L1 -634 5537 5323 840 251 70 18 chr15 8100478 8100808 -77594946 + L1M4 LINE L1 4446 4792 -1354 305 225 25 38 chr15 8100820 8100900 -77594854 - MER5B DNA MER1_type -98 80 2 572 295 116 68 chr15 8101776 8102413 -77593341 - L3 LINE CR1 -259 1318 651 2594 55 0 7 chr15 8103603 8103913 -77591841 + AluY SINE Alu 1 308 -3 279 247 50 111 chr15 8104002 8104141 -77591613 + L1ME4a LINE L1 5854 5969 -152 2124 86 32 4 chr15 8104141 8104420 -77591334 + AluSx SINE Alu 1 287 -25 279 247 50 111 chr15 8104420 8104559 -77591195 + L1ME4a LINE L1 5969 6115 -6 369 150 17 0 chr15 8104872 8104932 -77590822 + MLT1A2 LTR MaLR 1 61 -313 1068 257 115 41 chr15 8105246 8105733 -77590021 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr15 8105911 8105938 -77589816 + AT_rich Low_complexity Low_complexity 1 27 0 670 271 4 62 chr15 8106140 8106384 -77589370 - MLT1K LTR MaLR -3 585 356 266 259 75 75 chr15 8106402 8106576 -77589178 - MLT1K LTR MaLR -359 229 56 1140 170 57 145 chr15 8106653 8106971 -77588783 + AluJb SINE Alu 1 290 -12 222 348 0 65 chr15 8107035 8107140 -77588614 + L2 LINE L2 2487 2580 -734 835 204 122 5 chr15 8107140 8107336 -77588418 - MER20B DNA MER1_type 0 219 1 222 348 0 65 chr15 8107336 8107385 -77588369 + L2 LINE L2 2580 2631 -683 243 0 0 0 chr15 8107391 8107418 -77588336 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1640 171 0 0 chr15 8107514 8107759 -77587995 - AluSx SINE Alu -67 245 1 2024 142 0 43 chr15 8107928 8108252 -77587502 - AluSx SINE Alu -2 310 1 197 332 53 91 chr15 8108330 8108517 -77587237 + L2 LINE L2 2872 3051 -221 184 360 56 11 chr15 8108755 8108844 -77586910 + MIR SINE MIR 61 153 -109 2588 195 9 26 chr15 8109143 8109681 -77586073 + L1MB8 LINE L1 5542 6070 -108 1908 132 0 4 chr15 8109681 8109953 -77585801 + AluSx SINE Alu 1 271 -41 1243 183 12 74 chr15 8110055 8110378 -77585376 + MER83B-int LTR ERV1 2930 3232 -2714 1853 197 52 65 chr15 8110391 8110793 -77584961 + MER83B-int LTR ERV1 2886 3269 -1611 1883 138 0 31 chr15 8110793 8111112 -77584642 + AluSx SINE Alu 1 310 0 1853 197 52 65 chr15 8111112 8111246 -77584508 + MER83B-int LTR ERV1 3269 3403 -1477 1549 210 16 57 chr15 8111310 8111682 -77584072 + MLT1A1 LTR MaLR 1 357 -8 7272 134 33 12 chr15 8111799 8112640 -77583114 + Tigger1 DNA MER2_type 1 877 -1541 2297 125 0 3 chr15 8112640 8112952 -77582802 + AluSq SINE Alu 1 311 -2 7272 134 33 12 chr15 8112952 8113309 -77582445 + Tigger1 DNA MER2_type 877 1225 -1193 614 286 95 8 chr15 8113440 8113692 -77582062 - ERVL LTR ERVL -667 5097 4824 538 295 66 0 chr15 8113808 8113974 -77581780 - ERVL LTR ERVL -1089 4675 4499 315 260 0 0 chr15 8114670 8114743 -77581011 - L1M1 LINE L1 -4193 3372 3300 11055 204 34 20 chr15 8114800 8115156 -77580598 - L1PB2 LINE L1 -3 6148 5799 267 31 0 0 chr15 8115156 8115188 -77580566 + (TG)n Simple_repeat Simple_repeat 2 33 0 11055 204 34 20 chr15 8115188 8116302 -77579452 - L1PB2 LINE L1 -352 5799 4703 2200 142 39 25 chr15 8116302 8116661 -77579093 + THE1B LTR MaLR 1 364 0 11055 204 34 20 chr15 8116661 8116939 -77578815 - L1PB2 LINE L1 -1448 4703 4431 293 0 0 26 chr15 8116939 8116977 -77578777 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 11055 204 34 20 chr15 8116977 8117198 -77578556 - L1PB2 LINE L1 -1720 4431 4215 9252 58 3 2 chr15 8117198 8118266 -77577488 - MER11C LTR ERVK -2 1069 1 11055 204 34 20 chr15 8118266 8119812 -77575942 - L1PB2 LINE L1 -1936 4215 2552 340 285 10 67 chr15 8120300 8120493 -77575261 + L1ME4a LINE L1 5783 5964 -157 237 279 100 56 chr15 8120809 8121078 -77574676 + L1 LINE L1 4736 5016 -1130 516 225 196 35 chr15 8121482 8121632 -77574122 - AluJo SINE Alu -15 297 114 206 81 27 0 chr15 8121632 8121669 -77574085 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 516 225 196 35 chr15 8121669 8121691 -77574063 - AluJo SINE Alu -198 114 97 440 141 0 0 chr15 8121705 8121769 -77573985 - AluSp/q SINE Alu -36 267 204 3456 177 4 2 chr15 8121769 8122324 -77573430 + L1PA12 LINE L1 1030 1585 -5996 3391 148 44 19 chr15 8122322 8122952 -77572802 + L1PA12 LINE L1 2388 3033 -4541 * 5265 126 37 16 chr15 8123066 8123901 -77571853 - L1PB2 LINE L1 -5251 895 9 2068 124 0 0 chr15 8123914 8124188 -77571566 - AluSx SINE Alu -15 297 24 1034 175 11 26 chr15 8124188 8124377 -77571377 - MLT1C LTR MaLR -281 186 1 24 0 0 0 chr15 8127213 8127237 -77568517 + AT_rich Low_complexity Low_complexity 1 24 0 188 122 24 0 chr15 8127752 8127793 -77567961 + T-rich Low_complexity Low_complexity 6 47 0 207 281 135 11 chr15 8128141 8128230 -77567524 - MIR3 SINE MIR 0 208 109 385 249 12 89 chr15 8128405 8128574 -77567180 - LTR2 LTR ERV1 -293 156 1 316 138 17 0 chr15 8128908 8128966 -77566788 - MLT1E LTR MaLR -2 565 507 1523 205 51 32 chr15 8128966 8129336 -77566418 - MSTD LTR MaLR -19 377 1 1764 278 71 14 chr15 8129336 8129606 -77566148 - MLT1E LTR MaLR -56 537 284 2148 148 3 0 chr15 8129606 8129917 -77565837 - AluSp SINE Alu -1 312 1 1764 278 71 14 chr15 8129917 8130154 -77565600 - MLT1E LTR MaLR -309 284 1 1082 237 53 0 chr15 8130192 8130437 -77565317 - MIR SINE MIR -3 259 2 1918 159 37 67 chr15 8131556 8131958 -77563796 + MLT1B LTR MaLR 1 390 0 1443 180 38 52 chr15 8132288 8132632 -77563122 - MER44D DNA MER2_type 0 609 1 2303 89 10 0 chr15 8133474 8133766 -77561988 + AluSx SINE Alu 1 295 -17 242 186 0 0 chr15 8134091 8134134 -77561620 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr15 8134523 8134555 -77561199 + AT_rich Low_complexity Low_complexity 1 32 0 2280 87 13 0 chr15 8134562 8134860 -77560894 - AluY SINE Alu -7 304 3 21 36 0 0 chr15 8135664 8135692 -77560062 + AT_rich Low_complexity Low_complexity 1 28 0 2265 101 3 0 chr15 8137183 8137480 -77558274 - AluSx SINE Alu -14 298 1 621 291 39 35 chr15 8137589 8137843 -77557911 - LTR40b LTR ERVL -5 457 203 373 190 267 0 chr15 8138023 8138139 -77557615 - LTR40a LTR ERVL -372 147 1 1817 166 11 0 chr15 8138334 8138617 -77557137 - AluJo SINE Alu -26 286 1 5669 150 12 7 chr15 8139392 8139525 -77556229 + L1MA4 LINE L1 5237 5368 -932 2025 134 0 0 chr15 8139525 8139835 -77555919 + AluSx SINE Alu 1 310 0 5669 150 12 7 chr15 8139835 8140750 -77555004 + L1MA4 LINE L1 5368 6291 -9 1555 81 0 5 chr15 8141040 8141262 -77554492 - L1P LINE L1 -1216 4930 4710 * 3082 71 23 2 chr15 8141251 8141686 -77554068 - L1P LINE L1 -1697 4449 4006 1207 97 0 0 chr15 8142135 8142300 -77553454 + L1PA13 LINE L1 5980 6144 -19 53 17 0 0 chr15 8142301 8142361 -77553393 + AT_rich Low_complexity Low_complexity 1 60 0 2385 94 3 0 chr15 8142687 8142995 -77552759 + AluSc SINE Alu 1 309 0 21 36 0 0 chr15 8143100 8143128 -77552626 + AT_rich Low_complexity Low_complexity 1 28 0 2175 130 0 3 chr15 8143693 8143992 -77551762 + AluJb SINE Alu 3 300 -12 2010 151 0 10 chr15 8145176 8145480 -77550274 - AluSx SINE Alu -3 309 9 959 189 0 0 chr15 8145491 8145650 -77550104 - FRAM SINE Alu -17 159 1 25 51 0 0 chr15 8145943 8145982 -77549772 + AT_rich Low_complexity Low_complexity 1 39 0 394 18 36 0 chr15 8146083 8146138 -77549616 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 428 253 102 49 chr15 8146176 8146370 -77549384 - MIR SINE MIR -46 216 15 2062 167 0 24 chr15 8147190 8147562 -77548192 - MLT1A1 LTR MaLR -2 363 1 226 230 6 0 chr15 8147562 8147609 -77548145 + MER5B DNA MER1_type 64 123 -66 610 218 127 30 chr15 8147842 8148007 -77547747 - MER5A DNA MER1_type 0 189 9 263 307 10 0 chr15 8150546 8150647 -77545107 + MER94 DNA DNA 1 102 -32 2263 122 6 3 chr15 8150782 8151094 -77544660 + AluSq SINE Alu 1 313 0 243 286 14 0 chr15 8152067 8152137 -77543617 + GA-rich Low_complexity Low_complexity 2 72 0 26 0 0 0 chr15 8152763 8152789 -77542965 + AT_rich Low_complexity Low_complexity 1 26 0 318 251 57 109 chr15 8153111 8153322 -77542432 - LTR41 LTR ERVL -564 209 10 207 326 174 0 chr15 8153366 8153464 -77542290 + L2 LINE L2 2233 2347 -967 26 0 0 0 chr15 8153547 8153573 -77542181 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 103 22 chr15 8153866 8154098 -77541656 - MIR SINE MIR -7 255 5 3524 188 42 39 chr15 8154122 8154642 -77541112 + L1MB4 LINE L1 4415 4932 -1248 2587 185 9 0 chr15 8154642 8155101 -77540653 + MLT1C LTR MaLR 5 467 0 3524 188 42 39 chr15 8155101 8155893 -77539861 + L1MB4 LINE L1 4932 5720 -460 2106 120 3 3 chr15 8155893 8156192 -77539562 + AluSc SINE Alu 1 299 -10 3524 188 42 39 chr15 8156192 8156296 -77539458 + L1MB4 LINE L1 5720 5822 -358 2189 105 0 13 chr15 8156296 8156601 -77539153 + AluSc SINE Alu 1 301 -8 3524 188 42 39 chr15 8156601 8156938 -77538816 + L1MB4 LINE L1 5822 6174 -6 421 252 101 0 chr15 8157318 8157437 -77538317 - MIR SINE MIR 0 262 132 415 341 7 7 chr15 8157697 8157832 -77537922 + L2 LINE L2 3137 3271 -1 22 0 0 0 chr15 8158455 8158477 -77537277 + AT_rich Low_complexity Low_complexity 1 22 0 2271 99 3 0 chr15 8160456 8160748 -77535006 + AluSx SINE Alu 1 293 -19 3521 135 4 0 chr15 8161403 8161930 -77533824 - LTR26B LTR ERV1 -2 529 1 997 65 43 0 chr15 8162802 8162940 -77532814 - L1MA2 LINE L1 -5 6299 6156 1197 93 0 0 chr15 8163763 8163914 -77531840 + AluSq/x SINE Alu 1 151 -161 2688 97 11 3 chr15 8165781 8166153 -77529601 + THE1C LTR MaLR 1 375 0 2485 79 93 109 chr15 8166153 8166649 -77529105 + THE1C-int LTR MaLR 1 488 -1092 6753 179 86 20 chr15 8166750 8168189 -77527565 + MER52A LTR ERV1 223 1755 0 180 111 0 0 chr15 8168413 8168440 -77527314 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr15 8168932 8169005 -77526749 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr15 8169600 8170246 -77525508 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr15 8170396 8170890 -77524864 - L1M4 LINE L1 -3444 2702 2159 820 199 6 0 chr15 8171431 8171607 -77524147 - L1MB3 LINE L1 -197 5986 5810 579 266 10 3 chr15 8171726 8171869 -77523885 + MER45A DNA AcHobo 28 169 -9 609 242 25 80 chr15 8171920 8172026 -77523728 - L1MB3 LINE L1 -1393 4753 4643 2404 59 16 7 chr15 8172026 8172333 -77523421 - AluY SINE Alu -1 310 1 609 242 25 80 chr15 8172333 8172540 -77523214 - L1MB3 LINE L1 -1503 4643 4457 2670 192 58 12 chr15 8172594 8172844 -77522910 - L1MB2 LINE L1 -123 6048 5811 2280 141 88 8 chr15 8172844 8173240 -77522514 + MSTA LTR MaLR 1 428 0 2670 192 58 12 chr15 8173240 8173630 -77522124 - L1MB2 LINE L1 -360 5811 5379 2715 191 12 20 chr15 8173631 8174179 -77521575 - MLT2B3 LTR ERVL -19 514 1 1544 228 24 2 chr15 8174179 8174596 -77521158 - L1MB2 LINE L1 -782 5364 4939 2612 72 8 3 chr15 8174602 8174965 -77520789 + THE1-int LTR MaLR 61 425 -1155 2339 98 0 0 chr15 8174966 8175263 -77520491 - AluSq SINE Alu -16 297 1 5249 204 39 43 chr15 8175344 8175953 -77519801 - L1MB2 LINE L1 -1265 4881 4271 270 0 0 0 chr15 8175953 8175983 -77519771 + (TG)n Simple_repeat Simple_repeat 1 30 0 5249 204 39 43 chr15 8175983 8176896 -77518858 - L1MB2 LINE L1 -1875 4271 3365 1166 241 31 3 chr15 8176896 8177219 -77518535 - L1MB2 LINE L1 -3208 2938 2607 2176 121 0 0 chr15 8177220 8177509 -77518245 - AluSq SINE Alu -22 291 3 236 300 28 67 chr15 8178060 8178240 -77517514 - HAL1b LINE L1 -825 523 351 263 184 0 36 chr15 8178244 8178311 -77517443 + L1MC/D LINE L1 5541 5598 -644 2222 108 0 3 chr15 8180456 8180762 -77514992 + AluSx SINE Alu 1 305 -7 319 234 86 78 chr15 8183680 8183936 -77511818 - Charlie7 DNA MER1_type -144 2468 2211 569 290 30 21 chr15 8185377 8185702 -77510052 + MLT1I LTR MaLR 40 400 -9 2242 88 0 3 chr15 8186003 8186311 -77509443 - AluSq SINE Alu 0 307 1 225 309 55 55 chr15 8186488 8186598 -77509156 + L2 LINE L2 3204 3313 0 446 324 56 42 chr15 8186609 8186825 -77508929 + L3 LINE CR1 909 1127 -450 310 370 65 16 chr15 8187263 8187447 -77508307 - MIR SINE MIR -50 212 20 * 429 297 179 29 chr15 8187443 8187716 -77508038 + L3 LINE CR1 1204 1517 -60 1808 160 7 4 chr15 8188612 8188893 -77506861 + AluJo SINE Alu 1 282 -30 360 256 0 0 chr15 8188835 8188913 -77506841 + AluJ/FRAM SINE Alu 225 302 0 216 67 0 0 chr15 8188895 8188925 -77506829 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 3424 148 50 62 chr15 8189068 8189830 -77505924 + HUERS-P1 LTR ERV1 4449 5201 -745 2284 135 120 5 chr15 8189830 8190214 -77505540 - MSTA LTR MaLR 0 428 1 7388 186 126 8 chr15 8190214 8191691 -77504063 - MSTA-int LTR MaLR 0 1651 1 2362 132 62 34 chr15 8191691 8192107 -77503647 - MSTA LTR MaLR 0 428 1 1448 190 45 23 chr15 8192107 8192171 -77503583 + HUERS-P1 LTR ERV1 5430 5491 -840 2627 103 13 19 chr15 8192171 8192548 -77503206 + THE1C LTR MaLR 1 375 0 1448 190 45 23 chr15 8192548 8192836 -77502918 + HUERS-P1 LTR ERV1 5491 5790 -541 1280 167 140 39 chr15 8192848 8193183 -77502571 + HUERS-P1 LTR ERV1 5906 6274 -57 764 272 22 0 chr15 8193268 8193452 -77502302 + HUERS-P1 LTR ERV1 5950 6137 -126 2779 205 24 56 chr15 8193537 8194234 -77501520 + LTR8 LTR ERV1 16 690 -1 2207 99 0 13 chr15 8197260 8197564 -77498190 - AluSq SINE Alu -13 300 1 311 295 0 36 chr15 8197659 8197771 -77497983 - L1MC5 LINE L1 -145 7816 7709 344 254 30 52 chr15 8198383 8198517 -77497237 - HAL1 LINE L1 -122 2385 2255 690 291 225 44 chr15 8198787 8198904 -77496850 - HAL1 LINE L1 -698 1809 1715 1884 115 26 36 chr15 8198904 8199151 -77496603 - L1PA15 LINE L1 0 6165 5920 2224 76 7 0 chr15 8199151 8199440 -77496314 + AluSx SINE Alu 1 291 -21 1884 115 26 36 chr15 8199440 8199497 -77496257 - L1PA15 LINE L1 -245 5920 5864 690 291 225 44 chr15 8199497 8200907 -77494847 - HAL1 LINE L1 -792 1715 5 1131 181 84 50 chr15 8201198 8201519 -77494235 - L1MC/D LINE L1 -2199 5586 5255 202 268 0 0 chr15 8204778 8204819 -77490935 + polypyrimidine Low_complexity Low_complexity 3 43 0 1325 281 144 29 chr15 8205695 8206382 -77489372 - L1MC4a LINE L1 -743 5403 5092 2145 88 3 0 chr15 8206382 8206665 -77489089 - AluSx SINE Alu -28 284 1 1325 281 144 29 chr15 8206665 8206812 -77488942 - L1MC4a LINE L1 -1054 5092 4963 216 292 90 11 chr15 8207578 8207667 -77488087 + MIR3 SINE MIR 59 154 -54 650 265 132 0 chr15 8209679 8209868 -77485886 + Charlie1 DNA MER1_type 1 214 -2547 230 278 14 14 chr15 8209885 8209957 -77485797 + Charlie1 DNA MER1_type 2633 2704 -57 704 220 81 47 chr15 8210720 8211093 -77484661 - MLT1C LTR MaLR 0 467 5 367 229 31 0 chr15 8211194 8211290 -77484464 + MER103 DNA DNA 59 157 -9 1586 116 13 0 chr15 8211452 8211677 -77484077 + AluSq SINE Alu 1 228 -85 357 24 0 0 chr15 8211700 8211742 -77484012 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 346 229 106 39 chr15 8211787 8211966 -77483788 - HAL1 LINE L1 -95 2412 2222 259 290 0 0 chr15 8212247 8212316 -77483438 + MIR SINE MIR 159 227 -35 338 254 12 83 chr15 8212672 8212841 -77482913 - HAL1 LINE L1 -949 1558 1402 2156 89 3 10 chr15 8213691 8213983 -77481771 - AluSg SINE Alu -18 292 3 340 273 6 43 chr15 8214318 8214479 -77481275 + L1ME4a LINE L1 5967 6121 0 1617 182 20 37 chr15 8216620 8216972 -77478782 + MLT1A1 LTR MaLR 3 348 -17 1001 178 0 0 chr15 8224014 8224177 -77471577 + FRAM SINE Alu 1 163 -3 1486 153 102 11 chr15 8225956 8226230 -77469524 + AluJo SINE Alu 2 300 -12 192 179 0 0 chr15 8226671 8226710 -77469044 + (TG)n Simple_repeat Simple_repeat 1 39 0 398 301 37 34 chr15 8227432 8227665 -77468089 + HAL1 LINE L1 823 1059 -1448 2224 116 0 0 chr15 8227665 8227968 -77467786 + AluSx SINE Alu 1 303 -9 398 301 37 34 chr15 8227968 8228086 -77467668 + HAL1 LINE L1 1059 1175 -1332 749 246 107 85 chr15 8228783 8228809 -77466945 + MLT1J LTR MaLR 1 25 -486 2201 225 86 34 chr15 8228809 8229346 -77466408 - MLT1F1 LTR MaLR -2 565 1 749 246 107 85 chr15 8229346 8229729 -77466025 + MLT1J LTR MaLR 25 419 -92 2379 73 10 10 chr15 8229813 8230126 -77465628 + AluSq SINE Alu 1 313 0 2107 99 0 0 chr15 8231422 8231724 -77464030 + AluSg SINE Alu 1 302 0 365 304 99 48 chr15 8231731 8232004 -77463750 - L1MC4 LINE L1 -31 8011 7725 396 0 0 0 chr15 8232546 8232590 -77463164 + (TG)n Simple_repeat Simple_repeat 1 44 0 286 23 47 0 chr15 8232590 8232633 -77463121 + (GA)n Simple_repeat Simple_repeat 2 46 0 831 257 57 21 chr15 8232816 8233096 -77462658 - L1MC4a LINE L1 -1952 5856 5567 410 347 43 14 chr15 8233104 8233330 -77462424 - MIR SINE MIR -12 250 20 297 262 158 0 chr15 8234387 8234501 -77461253 - MIR SINE MIR -63 145 20 254 281 45 34 chr15 8235318 8235407 -77460347 - LTR33 LTR ERVL -341 180 91 880 193 173 85 chr15 8236681 8236895 -77458859 - MLT1A2 LTR MaLR 0 374 117 2089 122 0 0 chr15 8236895 8237189 -77458565 + AluSx SINE Alu 1 294 -18 880 193 173 85 chr15 8237189 8237316 -77458438 - MLT1A2 LTR MaLR -257 117 3 2240 108 0 0 chr15 8237854 8238159 -77457595 + AluSx SINE Alu 1 305 -7 195 162 0 0 chr15 8239039 8239076 -77456678 + (CA)n Simple_repeat Simple_repeat 2 38 0 1901 168 44 18 chr15 8239551 8239890 -77455864 + MER7A DNA MER2_type 1 346 0 480 35 0 0 chr15 8241889 8241947 -77453807 + (CA)n Simple_repeat Simple_repeat 1 58 0 2622 80 0 0 chr15 8242641 8242954 -77452800 + AluSq SINE Alu 1 313 0 736 282 116 28 chr15 8243345 8243732 -77452022 + L1MC4 LINE L1 7340 7760 -282 579 288 10 25 chr15 8244058 8244256 -77451498 + MIR SINE MIR 39 233 -29 308 289 30 73 chr15 8245187 8245419 -77450335 + L1MC/D LINE L1 5605 5826 -1982 27 0 0 0 chr15 8249055 8249082 -77446672 + GC_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr15 8249269 8249296 -77446458 + GC_rich Low_complexity Low_complexity 1 27 0 37 76 0 0 chr15 8249486 8249565 -77446189 + GC_rich Low_complexity Low_complexity 1 79 0 36 106 0 0 chr15 8249975 8250116 -77445638 + GC_rich Low_complexity Low_complexity 1 141 0 30 0 0 0 chr15 8250414 8250444 -77445310 + GC_rich Low_complexity Low_complexity 1 30 0 202 725 7 0 chr15 8250451 8250589 -77445165 + (GGCTG)n Simple_repeat Simple_repeat 3 141 0 30 27 0 0 chr15 8250830 8250867 -77444887 + GC_rich Low_complexity Low_complexity 1 37 0 3494 271 144 19 chr15 8253285 8254932 -77440822 + HAL1 LINE L1 84 1937 -570 304 239 266 0 chr15 8254968 8255081 -77440673 - MLT1I LTR MaLR -71 338 196 232 94 0 0 chr15 8255613 8255645 -77440109 - MLT1A2 LTR MaLR -62 312 281 890 240 151 43 chr15 8256026 8256302 -77439452 - MLT1I LTR MaLR 0 409 86 1829 164 5 67 chr15 8256302 8256457 -77439297 + MLT1A1 LTR MaLR 1 164 -201 2197 109 20 10 chr15 8256457 8256759 -77438995 + AluSx SINE Alu 1 305 -7 1829 164 5 67 chr15 8256759 8256992 -77438762 + MLT1A1 LTR MaLR 164 365 0 890 240 151 43 chr15 8256992 8257065 -77438689 - MLT1I LTR MaLR -323 86 22 794 292 111 39 chr15 8257100 8257437 -77438317 + HAL1 LINE L1 1957 2345 -162 2124 196 88 35 chr15 8257437 8258029 -77437725 + MLT1E3 LTR MaLR 1 623 -1 794 292 111 39 chr15 8258029 8258205 -77437549 + HAL1 LINE L1 2345 2507 0 1937 112 98 0 chr15 8258290 8258567 -77437187 - AluSg SINE Alu -6 304 1 372 341 96 10 chr15 8258567 8258775 -77436979 + MLT1J2 LTR MaLR 73 298 -152 184 336 64 0 chr15 8259953 8260063 -77435691 - MIR SINE MIR -83 179 63 2152 111 0 36 chr15 8261544 8261850 -77433904 + AluSx SINE Alu 3 297 -15 1087 213 171 72 chr15 8261877 8262346 -77433408 + MLT1G LTR MaLR 76 590 0 2449 89 0 13 chr15 8262364 8262678 -77433076 - AluSg SINE Alu 0 310 1 645 132 88 29 chr15 8262817 8262953 -77432801 + MLT1E3 LTR MaLR 1 144 -480 2522 76 0 0 chr15 8264085 8264386 -77431368 - AluY SINE Alu -10 301 1 248 318 86 18 chr15 8264407 8264579 -77431175 - L1M4 LINE L1 -3733 2413 2213 2099 126 13 0 chr15 8264579 8264880 -77430874 + AluSx SINE Alu 1 305 -7 248 318 86 18 chr15 8264880 8264987 -77430767 - L1M4 LINE L1 -3933 2213 2115 1077 246 68 14 chr15 8265327 8265620 -77430134 + MSTC LTR MaLR 1 309 -119 189 0 0 0 chr15 8266498 8266519 -77429235 + (A)n Simple_repeat Simple_repeat 1 21 0 2345 99 0 29 chr15 8270331 8270645 -77425109 + AluSg SINE Alu 1 305 -5 413 239 72 22 chr15 8270805 8270985 -77424769 + MER115 DNA AcHobo 58 246 -447 246 32 0 0 chr15 8271052 8271083 -77424671 + (GGCTG)n Simple_repeat Simple_repeat 2 32 0 347 259 168 5 chr15 8271091 8271276 -77424478 + MER115 DNA AcHobo 401 615 -78 3233 216 31 28 chr15 8271305 8272084 -77423670 + MER21B LTR ERV1 5 785 -78 232 288 38 12 chr15 8272645 8272725 -77423029 + MLT1L LTR MaLR 222 303 -312 1111 241 66 6 chr15 8273335 8273654 -77422100 + MER46C DNA MER2_type 1 338 0 835 182 6 77 chr15 8274710 8274891 -77420863 - FRAM SINE Alu -5 171 4 724 259 61 18 chr15 8274982 8275260 -77420494 + L1MEc LINE L1 35 324 -6072 2133 139 0 16 chr15 8275277 8275594 -77420160 + AluSx SINE Alu 1 312 0 1600 112 21 150 chr15 8275806 8276180 -77419574 + MER7A DNA MER2_type 1 324 -22 776 272 31 24 chr15 8276245 8276660 -77419094 + L1MEc LINE L1 660 1077 -5319 267 323 24 32 chr15 8276665 8276789 -77418965 + L1MDb LINE L1 7 129 -6280 311 264 11 11 chr15 8276899 8276986 -77418768 + L1MDb LINE L1 116 202 -6204 5663 251 50 17 chr15 8277504 8278175 -77417579 + L1MDb LINE L1 780 1427 -6015 2123 153 0 0 chr15 8278175 8278483 -77417271 + AluSx SINE Alu 1 308 -4 5663 251 50 17 chr15 8278483 8278528 -77417226 + L1MDb LINE L1 1427 1469 -5973 934 110 6 28 chr15 8278528 8278710 -77417044 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5663 251 50 17 chr15 8278710 8279402 -77416352 + L1MDb LINE L1 1469 2137 -5305 2175 132 0 0 chr15 8279402 8279697 -77416057 + AluSx SINE Alu 1 295 -17 5663 251 50 17 chr15 8279697 8279755 -77415999 + L1MDb LINE L1 2137 2192 -5250 333 0 0 0 chr15 8279755 8279792 -77415962 + (TA)n Simple_repeat Simple_repeat 1 37 0 5663 251 50 17 chr15 8279792 8281190 -77414564 + L1MDb LINE L1 2192 3542 -3900 2273 103 3 0 chr15 8281190 8281481 -77414273 - AluSg SINE Alu -18 292 1 5663 251 50 17 chr15 8281481 8282494 -77413260 + L1MDb LINE L1 3542 5704 -1738 1465 218 20 59 chr15 8282774 8282991 -77412763 + L1M4 LINE L1 4390 4614 -1532 1722 85 48 0 chr15 8282991 8283262 -77412492 + L1MA3 LINE L1 6020 6303 -2 1465 218 20 59 chr15 8283262 8283534 -77412220 + L1M4 LINE L1 4614 4860 -1286 4212 182 47 32 chr15 8283552 8284537 -77411217 - L1MB7 LINE L1 -23 6161 5154 2225 103 7 0 chr15 8284537 8284856 -77410898 + AluSp SINE Alu 1 313 0 4212 182 47 32 chr15 8284856 8285407 -77410347 - L1MB7 LINE L1 -1030 5154 4613 468 308 57 38 chr15 8285452 8285871 -77409883 + L1MEc LINE L1 1060 1486 -4910 5309 145 38 24 chr15 8285872 8286846 -77408908 + L1MC1 LINE L1 5346 6333 0 312 242 156 16 chr15 8286847 8286975 -77408779 + L1MEc LINE L1 1432 1577 -4638 753 251 76 51 chr15 8286980 8287374 -77408380 + L1MEc LINE L1 1845 2248 -4148 505 300 58 10 chr15 8287344 8287657 -77408097 + L1MEc LINE L1 2179 2506 -3709 * 1328 212 44 80 chr15 8287662 8287828 -77407926 + MLT1B LTR MaLR 1 171 -219 2186 139 0 0 chr15 8287828 8288129 -77407625 + AluSx SINE Alu 1 301 -11 1328 212 44 80 chr15 8288129 8288348 -77407406 + MLT1B LTR MaLR 171 372 -18 1853 227 118 2 chr15 8288364 8288888 -77406866 + L1MEc LINE L1 2513 3097 -3118 288 111 0 0 chr15 8289058 8289103 -77406651 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 212 71 0 chr15 8290531 8290616 -77405138 - MER45C DNA AcHobo -145 808 718 487 198 10 0 chr15 8290720 8290816 -77404938 - MER45C DNA AcHobo -776 177 81 456 323 69 44 chr15 8291573 8291942 -77403812 + HERV16 LTR ERVL 492 866 -4130 1705 175 66 0 chr15 8291942 8292262 -77403492 - L1MB3 LINE L1 -7 6176 5836 456 323 69 44 chr15 8292262 8292439 -77403315 + HERV16 LTR ERVL 866 1037 -3959 251 286 36 12 chr15 8292494 8292578 -77403176 + HERV16 LTR ERVL 1007 1092 -3904 2062 326 125 10 chr15 8292740 8293856 -77401898 + HERV16 LTR ERVL 1375 2658 -2430 2286 67 13 25 chr15 8295486 8295801 -77399953 - AluY SINE Alu 0 311 1 350 382 24 14 chr15 8296288 8296495 -77399259 + MIR SINE MIR 6 214 -48 541 196 250 7 chr15 8296589 8296737 -77399017 - LTR2 LTR ERV1 0 449 266 296 312 6 81 chr15 8296733 8296906 -77398848 - LTR2 LTR ERV1 -289 160 1 * 185 253 96 72 chr15 8297730 8297813 -77397941 - MIR SINE MIR -72 190 106 329 266 82 53 chr15 8298830 8299015 -77396739 + LTR33 LTR ERVL 1 166 -355 408 257 18 9 chr15 8299214 8299327 -77396427 + LTR33A LTR ERVL 407 520 -3 390 268 63 39 chr15 8300000 8300185 -77395569 - MLT1G LTR MaLR -138 417 218 447 186 23 0 chr15 8300490 8300568 -77395186 + MER67A LTR ERV1 1 80 -463 1086 235 70 60 chr15 8300568 8301027 -77394727 + MER67B LTR ERV1 1 341 -331 1728 143 17 7 chr15 8301027 8301321 -77394433 + AluY SINE Alu 1 297 -14 1086 235 70 60 chr15 8301321 8301385 -77394369 + MER67B LTR ERV1 341 403 -269 447 255 72 18 chr15 8301395 8301599 -77394155 + MER67A LTR ERV1 289 541 -2 672 205 0 0 chr15 8302172 8302338 -77393416 + (TG)n Simple_repeat Simple_repeat 2 167 0 199 339 0 0 chr15 8305770 8305829 -77389925 - L2 LINE L2 -9 3263 3205 330 67 0 0 chr15 8307286 8307331 -77388423 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 295 85 31 chr15 8307936 8308065 -77387689 - MIR SINE MIR -56 152 17 367 282 150 29 chr15 8308365 8308638 -77387116 + ERVL LTR ERVL 5038 5343 -421 1531 193 7 10 chr15 8308660 8308956 -77386798 + AluSx SINE Alu 1 295 -17 1786 244 89 21 chr15 8308956 8309360 -77386394 - L1ME3A LINE L1 -40 6130 5755 2060 105 3 59 chr15 8309360 8309683 -77386071 - AluSg SINE Alu -5 305 1 1786 244 89 21 chr15 8309683 8309718 -77386036 - L1ME3A LINE L1 -415 5755 5724 297 0 0 0 chr15 8309718 8309751 -77386003 + (CA)n Simple_repeat Simple_repeat 2 34 0 1786 244 89 21 chr15 8309751 8309961 -77385793 - L1ME3A LINE L1 -446 5724 5436 204 40 0 0 chr15 8309965 8309990 -77385764 + (TCCCC)n Simple_repeat Simple_repeat 4 28 0 316 323 120 32 chr15 8310046 8310387 -77385367 - L1M4c LINE L1 -1205 1538 937 3812 201 11 62 chr15 8310438 8310638 -77385116 - L1MB8 LINE L1 -45 6133 5925 1594 164 20 30 chr15 8310638 8310942 -77384812 - AluJb SINE Alu -11 301 1 3812 201 11 62 chr15 8310942 8311803 -77383951 - L1MB8 LINE L1 -253 5925 5122 2348 88 3 0 chr15 8311955 8312263 -77383491 - AluY SINE Alu -2 309 1 238 321 101 0 chr15 8312472 8312581 -77383173 - LTR33A LTR ERVL -16 507 388 2132 192 11 8 chr15 8312629 8312993 -77382761 - MLT1A1 LTR MaLR 0 365 1 244 231 39 108 chr15 8313208 8313338 -77382416 - LTR33A LTR ERVL -365 158 38 1740 133 0 4 chr15 8313693 8313956 -77381798 + AluSx SINE Alu 12 273 -39 279 284 88 14 chr15 8314242 8314390 -77381364 + MER103 DNA DNA 1 159 -7 1528 212 164 15 chr15 8315209 8315606 -77380148 - MLT1F1 LTR MaLR -2 565 110 31 26 0 0 chr15 8315926 8315964 -77379790 + AT_rich Low_complexity Low_complexity 1 38 0 668 148 40 0 chr15 8316201 8316302 -77379452 + FLAM_C SINE Alu 7 111 -32 2040 141 10 0 chr15 8316327 8316633 -77379121 + AluSq SINE Alu 3 311 -2 280 315 36 18 chr15 8316976 8317087 -77378667 - L2 LINE L2 0 3313 3201 630 152 128 0 chr15 8317156 8317281 -77378473 - MLT1F1 LTR MaLR -426 141 1 244 163 105 13 chr15 8317513 8317606 -77378148 + MIR SINE MIR 102 207 -55 1674 62 0 5 chr15 8319009 8319218 -77376536 - L1PA5 LINE L1 0 6154 5947 324 339 17 40 chr15 8319677 8319854 -77375900 + MIR SINE MIR 21 193 -69 1831 94 4 0 chr15 8319953 8320208 -77375546 + AluSx SINE Alu 57 312 0 928 112 0 0 chr15 8321705 8321830 -77373924 - AluSq/x SINE Alu -188 125 1 189 306 16 0 chr15 8321959 8322021 -77373733 + MIR3 SINE MIR 122 184 -24 2180 160 28 21 chr15 8322805 8323192 -77372562 + MLT1B LTR MaLR 1 390 0 381 328 73 35 chr15 8324473 8324705 -77371049 - HERV16 LTR ERVL -4211 785 545 801 338 21 68 chr15 8325005 8325490 -77370264 + HERV16 LTR ERVL 1110 1571 -3425 1024 173 26 30 chr15 8325527 8325819 -77369935 + L1MB7 LINE L1 5726 6148 -36 1646 254 98 27 chr15 8325844 8326367 -77369387 + HERV16 LTR ERVL 1712 2271 -2725 775 144 30 30 chr15 8326369 8326484 -77369270 + AluJo/FLAM SINE Alu 1 118 -184 1943 152 0 13 chr15 8326484 8326619 -77369135 + AluJb SINE Alu 1 136 -176 2211 116 3 0 chr15 8326619 8326929 -77368825 + AluSp SINE Alu 2 312 -1 1943 152 0 13 chr15 8326929 8327108 -77368646 + AluJb SINE Alu 136 311 -1 775 144 30 30 chr15 8327108 8327124 -77368630 + AluJo/FLAM SINE Alu 117 132 -170 21 57 0 0 chr15 8327142 8327177 -77368577 + AT_rich Low_complexity Low_complexity 1 35 0 1811 318 26 46 chr15 8327194 8328083 -77367671 + HERV16 LTR ERVL 2309 3091 -1905 367 331 20 67 chr15 8328105 8328359 -77367395 + HERV16 LTR ERVL 3595 3836 -1928 216 0 0 0 chr15 8328557 8328581 -77367173 + (A)n Simple_repeat Simple_repeat 1 24 0 404 318 47 25 chr15 8328586 8328804 -77366950 - L1MEc LINE L1 -3927 2482 2237 2714 142 49 0 chr15 8329025 8329433 -77366321 + MSTC LTR MaLR 1 428 0 378 347 140 0 chr15 8329456 8329649 -77366105 - L1MEc LINE L1 -4579 1984 1765 5409 110 10 22 chr15 8329973 8330533 -77365221 + L1MA5A LINE L1 5489 6037 -260 2058 121 3 10 chr15 8330533 8330838 -77364916 + AluSx SINE Alu 1 303 -9 5409 110 10 22 chr15 8330838 8331096 -77364658 + L1MA5A LINE L1 6037 6297 0 21 57 0 0 chr15 8331096 8331131 -77364623 + AT_rich Low_complexity Low_complexity 1 35 0 361 263 11 21 chr15 8331728 8331823 -77363931 + MER91A DNA MER1_type 1 94 -102 303 261 34 11 chr15 8332960 8333048 -77362706 + L2 LINE L2 3134 3223 -49 199 289 24 48 chr15 8333170 8333253 -77362501 + MIR SINE MIR 89 169 -93 1771 171 0 7 chr15 8333356 8333654 -77362100 + AluJb SINE Alu 1 296 -16 1396 227 98 102 chr15 8333860 8334398 -77361356 + MLT1F LTR MaLR 7 542 0 733 273 131 41 chr15 8335171 8335753 -77360001 - HAL1 LINE L1 0 2507 1874 2200 316 86 31 chr15 8335764 8336518 -77359236 - HAL1 LINE L1 -694 1813 955 2077 92 4 0 chr15 8336518 8336791 -77358963 - AluSx SINE Alu -38 274 1 2200 316 86 31 chr15 8336791 8337340 -77358414 - HAL1 LINE L1 -1552 955 438 329 276 0 0 chr15 8337585 8337661 -77358093 + MIR SINE MIR 119 194 -68 2340 86 0 0 chr15 8338564 8338868 -77356886 + AluSc SINE Alu 1 304 -5 1878 112 0 14 chr15 8338875 8339153 -77356601 + AluSx SINE Alu 39 312 0 2056 115 13 16 chr15 8339886 8340198 -77355556 + AluSx SINE Alu 1 311 -1 738 191 26 32 chr15 8340288 8340598 -77355156 - MLT1A1 LTR MaLR -1 364 1 311 307 98 53 chr15 8340670 8340779 -77354975 - L1MC4a LINE L1 -1876 5932 5829 2091 115 6 53 chr15 8340779 8341100 -77354654 - AluSq SINE Alu -7 306 1 311 307 98 53 chr15 8341100 8341234 -77354520 - L1MC4a LINE L1 -1979 5829 5678 362 265 66 10 chr15 8341347 8341543 -77354211 - L1MC4a LINE L1 -2322 5486 5280 414 0 0 0 chr15 8341834 8341880 -77353874 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 167 7 0 chr15 8341880 8342162 -77353592 - AluSx SINE Alu -28 284 1 1185 129 4 117 chr15 8342396 8342660 -77353094 + LTR12 LTR ERV1 1 234 -480 275 149 0 0 chr15 8342717 8342764 -77352990 + LTR12 LTR ERV1 228 274 -440 233 274 0 0 chr15 8342794 8342867 -77352887 + LTR30 LTR ERV1 552 624 -98 558 217 58 0 chr15 8342867 8342987 -77352767 + LTR12 LTR ERV1 359 485 -229 1955 117 11 3 chr15 8343398 8343681 -77352073 + AluSg SINE Alu 15 299 -11 3960 83 18 2 chr15 8343776 8344321 -77351433 - MER41A LTR ERV1 0 554 1 355 206 29 0 chr15 8345788 8345856 -77349898 - MER8 DNA MER2_type 0 239 170 * 2210 143 88 7 chr15 8345839 8346257 -77349497 + Tigger2 DNA MER2_type 2267 2718 0 568 205 93 12 chr15 8346888 8347049 -77348705 - Charlie1b DNA MER1_type -24 499 326 938 82 16 0 chr15 8347058 8347180 -77348574 + AluSp SINE Alu 2 125 -188 277 114 0 0 chr15 8347363 8347407 -77348347 - MADE1 DNA Mariner -36 44 1 214 239 0 0 chr15 8347433 8347479 -77348275 - L2 LINE L2 -13 3300 3255 1240 279 42 18 chr15 8347746 8348180 -77347574 - L1ME1 LINE L1 -5 6161 5718 640 211 35 99 chr15 8348729 8348961 -77346793 - Charlie1b DNA MER1_type -305 218 2 403 291 117 45 chr15 8348971 8349150 -77346604 + HAL1 LINE L1 818 1009 -1498 * 467 289 179 7 chr15 8349120 8349393 -77346361 + L1MC/D LINE L1 4240 4559 -1587 2063 155 0 15 chr15 8349495 8349837 -77345917 - MER1B DNA MER1_type 0 337 1 354 312 65 13 chr15 8349844 8349998 -77345756 + L1MC/D LINE L1 5173 5334 -812 225 0 171 0 chr15 8350127 8350162 -77345592 - MLT2D LTR ERVL 0 515 475 293 264 24 24 chr15 8350165 8350290 -77345464 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1642 196 32 51 chr15 8350325 8350605 -77345149 - MLT2D LTR ERVL -45 369 85 2082 105 22 0 chr15 8350605 8350872 -77344882 + AluSx SINE Alu 3 275 -37 204 40 0 0 chr15 8350875 8350900 -77344854 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1642 196 32 51 chr15 8350900 8350988 -77344766 - MLT2D LTR ERVL -331 83 4 279 272 99 27 chr15 8351126 8351292 -77344462 - MLT1J1 LTR MaLR -279 167 31 678 167 9 0 chr15 8351303 8351411 -77344343 - FLAM_C SINE Alu -20 123 15 272 178 56 56 chr15 8351430 8351520 -77344234 + L1MC/D LINE L1 5393 5482 -2326 235 250 16 0 chr15 8351799 8351863 -77343891 + MER115 DNA AcHobo 180 244 -449 2312 103 7 0 chr15 8352040 8352342 -77343412 + AluSg SINE Alu 1 304 -6 720 276 75 13 chr15 8352459 8352698 -77343056 + MIR SINE MIR 9 262 0 329 328 0 17 chr15 8353432 8353548 -77342206 + C-rich Low_complexity Low_complexity 5 118 0 424 117 0 72 chr15 8353551 8353662 -77342092 + (CCCCCT)n Simple_repeat Simple_repeat 6 108 0 22 0 0 0 chr15 8354047 8354069 -77341685 + GC_rich Low_complexity Low_complexity 1 22 0 2483 80 0 0 chr15 8355625 8355927 -77339827 - AluY SINE Alu -9 302 1 2301 92 7 0 chr15 8356074 8356369 -77339385 - AluSp SINE Alu -16 297 1 255 339 31 63 chr15 8357286 8357413 -77338341 + MIR3 SINE MIR 15 137 -71 1788 191 0 6 chr15 8357467 8357943 -77337811 - AluJb SINE Alu 0 474 1 464 230 34 39 chr15 8357993 8358171 -77337583 - L1MC5 LINE L1 -70 7891 7715 929 255 97 47 chr15 8358188 8358569 -77337185 - MLT1H LTR MaLR -43 506 107 1468 197 60 161 chr15 8358674 8358906 -77336848 - L1MC5 LINE L1 -262 7699 7445 2018 159 0 3 chr15 8358906 8359208 -77336546 - AluSx SINE Alu -9 303 3 1468 197 60 161 chr15 8359208 8359523 -77336231 - L1MC5 LINE L1 -516 7445 7100 2454 97 3 0 chr15 8359523 8359832 -77335922 - AluSx SINE Alu -2 310 1 1468 197 60 161 chr15 8359832 8360457 -77335297 - L1MC5 LINE L1 -861 7100 6645 237 244 77 51 chr15 8360733 8360889 -77334865 - L1MC4a LINE L1 -1614 6194 6035 2419 78 10 0 chr15 8361128 8361421 -77334333 - AluSx SINE Alu -14 298 3 1305 174 154 48 chr15 8361444 8361496 -77334258 - MSTD LTR MaLR -2 394 349 2111 133 3 7 chr15 8361496 8361796 -77333958 - AluSx SINE Alu -13 299 1 1305 174 154 48 chr15 8361796 8362099 -77333655 - MSTD LTR MaLR -47 349 1 1079 227 61 14 chr15 8363582 8363926 -77331828 - MER69 DNA AcHobo -1 2525 2166 866 217 28 0 chr15 8363926 8364106 -77331648 - MER58A DNA MER1_type 0 224 40 786 194 47 56 chr15 8364152 8364237 -77331517 - MER69 DNA AcHobo -381 2145 2061 2456 81 0 0 chr15 8364237 8364534 -77331220 - AluY SINE Alu -14 297 1 786 194 47 56 chr15 8364534 8364680 -77331074 - MER69 DNA AcHobo -465 2061 1916 * 800 266 56 0 chr15 8364676 8364890 -77330864 - MER69 DNA AcHobo -1591 935 710 2156 178 116 65 chr15 8365506 8366033 -77329721 + MLT2B3 LTR ERVL 1 554 0 468 286 86 45 chr15 8367576 8367803 -77327951 + MIR SINE MIR 17 261 -1 357 24 0 0 chr15 8369139 8369181 -77326573 + (CA)n Simple_repeat Simple_repeat 2 43 0 1995 125 12 64 chr15 8370054 8370383 -77325371 + AluSx SINE Alu 1 312 0 304 330 124 29 chr15 8370408 8370519 -77325235 + HAL1 LINE L1 880 979 -1528 1282 164 122 73 chr15 8370519 8370946 -77324808 - LTR7 LTR ERV1 -2 448 1 304 330 124 29 chr15 8370946 8371218 -77324536 + HAL1 LINE L1 979 1302 -1205 217 204 37 0 chr15 8371634 8371688 -77324066 + GA-rich Low_complexity Low_complexity 4 59 0 266 328 59 8 chr15 8371794 8371913 -77323841 - MIR SINE MIR -131 131 7 2556 77 0 0 chr15 8372455 8372766 -77322988 + AluY SINE Alu 1 311 0 554 380 123 0 chr15 8372768 8373100 -77322654 + L1MC4a LINE L1 4143 4515 -1631 2476 71 7 7 chr15 8373119 8373428 -77322326 - AluSc SINE Alu 0 309 1 312 285 166 40 chr15 8373450 8373601 -77322153 + L1MC4a LINE L1 5550 5719 -402 430 239 29 116 chr15 8373644 8373921 -77321833 + L1MC4a LINE L1 5707 5963 -158 2130 96 36 0 chr15 8373938 8374219 -77321535 - AluSx SINE Alu -17 295 5 29 70 0 0 chr15 8374369 8374426 -77321328 + AT_rich Low_complexity Low_complexity 1 57 0 645 178 8 0 chr15 8374426 8374544 -77321210 - FLAM_C SINE Alu -14 119 1 852 268 105 32 chr15 8374622 8375148 -77320606 - HAL1 LINE L1 -85 2422 1859 2467 71 10 0 chr15 8375491 8375938 -77319816 + AluY SINE Alu 1 450 0 287 360 0 0 chr15 8376259 8376412 -77319342 + CT-rich Low_complexity Low_complexity 2 154 0 2919 13 0 0 chr15 8376796 8377105 -77318649 + AluYb8 SINE Alu 1 309 -9 1366 237 59 3 chr15 8377629 8377950 -77317804 - MER70A LTR ERVL -130 342 4 1018 217 5 0 chr15 8378848 8379051 -77316703 - MLT1B LTR MaLR -11 379 176 1108 146 29 0 chr15 8379051 8379222 -77316532 - FRAM SINE Alu -3 173 1 779 213 30 0 chr15 8379226 8379395 -77316359 - MLT1B LTR MaLR -213 177 4 1308 204 19 94 chr15 8380750 8381166 -77314588 - MLT1B LTR MaLR -5 385 1 260 212 24 0 chr15 8381333 8381418 -77314336 + (CATAT)n Simple_repeat Simple_repeat 4 90 0 606 195 29 6 chr15 8381433 8381607 -77314147 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 558 227 80 25 chr15 8382162 8382325 -77313429 - MER69A DNA AcHobo -5 172 1 365 216 21 0 chr15 8383375 8383472 -77312282 + (CATAT)n Simple_repeat Simple_repeat 5 103 0 2289 111 0 0 chr15 8383672 8383969 -77311785 - AluSx SINE Alu -15 297 1 25 0 0 0 chr15 8384199 8384224 -77311530 + AT_rich Low_complexity Low_complexity 1 25 0 2125 116 17 0 chr15 8384885 8385177 -77310577 - AluSg SINE Alu -13 297 1 216 279 18 6 chr15 8385493 8385604 -77310150 - MER5A DNA MER1_type 0 189 12 388 272 73 15 chr15 8386517 8386653 -77309101 + MER69 DNA AcHobo 6 149 -2377 343 194 15 0 chr15 8386670 8386737 -77309017 - MLT1G1 LTR MaLR 0 595 528 4906 229 47 36 chr15 8386743 8387786 -77307968 + L1MDb LINE L1 8 1069 -5340 2150 147 0 10 chr15 8387786 8388099 -77307655 - AluSx SINE Alu -2 310 1 4906 229 47 36 chr15 8388099 8388368 -77307386 + L1MDb LINE L1 1069 1334 -5075 2335 126 0 0 chr15 8388378 8388688 -77307066 + AluSg SINE Alu 1 310 0 656 291 12 8 chr15 8388688 8388929 -77306825 + L1MDb LINE L1 2776 3017 -3389 1354 165 40 144 chr15 8389170 8389474 -77306280 - Zaphod DNA AcHobo -238 3793 3459 213 39 0 0 chr15 8389474 8389500 -77306254 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1354 165 40 144 chr15 8389500 8389523 -77306231 - Zaphod DNA AcHobo -572 3459 3435 1821 118 19 23 chr15 8389523 8389785 -77305969 - AluSx SINE Alu -51 261 1 1354 165 40 144 chr15 8389785 8390025 -77305729 - Zaphod DNA AcHobo -596 3435 3284 327 246 77 62 chr15 8390225 8390355 -77305399 + L1MCa LINE L1 1933 2064 -4362 256 24 49 0 chr15 8390357 8390398 -77305356 + (TA)n Simple_repeat Simple_repeat 1 43 0 2427 65 0 40 chr15 8390399 8390723 -77305031 - AluY SINE Alu 0 311 1 239 325 83 17 chr15 8390729 8390849 -77304905 - L1MEd LINE L1 -5496 623 496 586 164 61 73 chr15 8390851 8391089 -77304665 + MLT1E3 LTR MaLR 1 285 -369 2853 106 27 12 chr15 8391135 8391549 -77304205 + MSTA LTR MaLR 1 420 -8 1017 226 41 79 chr15 8391556 8391781 -77303973 + MLT1E3 LTR MaLR 292 501 -123 2261 93 3 0 chr15 8391781 8392082 -77303672 - AluSp SINE Alu -11 302 1 1017 226 41 79 chr15 8392082 8392196 -77303558 + MLT1E3 LTR MaLR 501 618 -6 727 216 117 47 chr15 8393230 8393615 -77302139 + MLT1G3 LTR MaLR 68 483 -107 3910 162 33 7 chr15 8393655 8394385 -77301369 - L1MD1 LINE L1 0 6242 5494 2790 144 44 6 chr15 8394393 8394872 -77300882 - L1MB2 LINE L1 -4 6167 5671 198 0 0 0 chr15 8394880 8394902 -77300852 + (TA)n Simple_repeat Simple_repeat 2 23 0 1999 109 0 7 chr15 8394905 8395189 -77300565 - AluSq SINE Alu -31 282 1 5928 214 36 48 chr15 8395202 8395394 -77300360 - L1MD1 LINE L1 -1949 4197 4004 1876 134 7 0 chr15 8395394 8395671 -77300083 - AluSx SINE Alu -17 295 17 5928 214 36 48 chr15 8395671 8397126 -77298628 - L1MD1 LINE L1 -2142 4004 2571 2576 125 72 5 chr15 8397126 8397527 -77298227 - MSTA LTR MaLR 0 428 1 5928 214 36 48 chr15 8397527 8397705 -77298049 - L1MD1 LINE L1 -3575 2571 2392 5361 135 5 24 chr15 8397705 8398868 -77296886 + L1PA16 LINE L1 5015 6160 -6 297 230 95 32 chr15 8399017 8399143 -77296611 - L1M3d LINE L1 -5756 135 2 * 3239 223 115 91 chr15 8399135 8399617 -77296137 - L1MB2 LINE L1 -743 5403 4934 1711 166 3 19 chr15 8399617 8399930 -77295824 - AluJo SINE Alu -2 310 3 3239 223 115 91 chr15 8399930 8400152 -77295602 - L1MB2 LINE L1 -1212 4934 4719 1492 156 26 22 chr15 8400152 8400422 -77295332 - AluJo SINE Alu -30 282 12 3239 223 115 91 chr15 8400422 8400526 -77295228 - L1MB2 LINE L1 -1427 4719 4619 424 60 0 230 chr15 8400526 8400573 -77295181 + MADE1 DNA Mariner 4 18 -62 9727 62 6 76 chr15 8400573 8402063 -77293691 - SVA Other Other 0 1386 1 424 60 0 230 chr15 8402063 8402115 -77293639 + MADE1 DNA Mariner 18 80 0 3239 223 115 91 chr15 8402115 8402827 -77292927 - L1MB2 LINE L1 -1527 4619 3926 2194 149 86 8 chr15 8402827 8403224 -77292530 + MSTA LTR MaLR 1 428 0 3239 223 115 91 chr15 8403224 8403274 -77292480 - L1MB2 LINE L1 -2220 3926 3879 704 187 8 0 chr15 8403274 8403397 -77292357 + FLAM_C SINE Alu 6 129 -14 3239 223 115 91 chr15 8403397 8404361 -77291393 - L1MB2 LINE L1 -2267 3879 2751 1078 215 106 8 chr15 8404368 8404624 -77291130 + AluJo SINE Alu 9 289 -23 438 271 8 0 chr15 8404629 8404751 -77291003 - L1MB2 LINE L1 -3389 2757 2635 496 250 45 82 chr15 8404895 8405115 -77290639 - L1M4 LINE L1 -1986 4160 3949 207 0 0 0 chr15 8405205 8405228 -77290526 + (T)n Simple_repeat Simple_repeat 1 23 0 397 279 50 95 chr15 8405254 8405443 -77290311 - L1M4 LINE L1 -2230 3916 3747 1093 142 296 9 chr15 8405443 8405676 -77290078 - AluYa5 SINE Alu -1 300 1 397 279 50 95 chr15 8405676 8405823 -77289931 - L1M4 LINE L1 -2399 3747 3595 202 307 23 23 chr15 8406576 8406664 -77289090 - L2 LINE L2 -1323 1991 1904 975 260 157 34 chr15 8406673 8407239 -77288515 + L2 LINE L2 2369 3088 -225 1833 49 4 0 chr15 8407239 8407465 -77288289 - AluY SINE Alu -4 307 81 975 260 157 34 chr15 8407465 8407714 -77288040 + L2 LINE L2 3088 3305 -8 201 337 34 11 chr15 8410007 8410096 -77285658 + MIR3 SINE MIR 107 197 -11 3294 116 65 35 chr15 8410734 8411149 -77284605 + MER41C LTR ERV1 2 438 -116 2330 83 0 0 chr15 8411149 8411450 -77284304 - AluY SINE Alu -10 301 1 3294 116 65 35 chr15 8411450 8411571 -77284183 + MER41C LTR ERV1 438 554 0 443 294 101 24 chr15 8412326 8412574 -77283180 + L1ME3A LINE L1 5618 5884 -286 1651 143 52 11 chr15 8412583 8412870 -77282884 + AluJb SINE Alu 1 299 -13 4288 147 20 33 chr15 8412966 8413575 -77282179 - MER4E LTR ERV1 0 779 181 2196 108 3 0 chr15 8413575 8413882 -77281872 - AluSx SINE Alu -4 308 1 4288 147 20 33 chr15 8413882 8414061 -77281693 - MER4E LTR ERV1 -598 181 1 207 204 0 0 chr15 8414073 8414117 -77281637 + CT-rich Low_complexity Low_complexity 2 45 0 5004 88 44 0 chr15 8414707 8415369 -77280385 - LTR8 LTR ERV1 0 691 1 866 256 75 17 chr15 8415515 8415808 -77279946 - MER5C DNA MER1_type -8 316 7 4244 127 116 83 chr15 8415930 8416174 -77279580 - MER4D LTR ERV1 0 872 638 1877 148 3 0 chr15 8416174 8416464 -77279290 + AluSx SINE Alu 1 291 -21 4244 127 116 83 chr15 8416464 8416855 -77278899 - MER4D LTR ERV1 -234 638 200 1764 159 3 3 chr15 8416855 8417138 -77278616 + AluJb SINE Alu 1 283 -29 4244 127 116 83 chr15 8417138 8417345 -77278409 - MER4D LTR ERV1 -672 200 1 3768 106 23 25 chr15 8418560 8419065 -77276689 - MER61E LTR ERV1 0 569 64 2159 120 3 0 chr15 8419065 8419373 -77276381 + AluSg SINE Alu 2 310 0 3768 106 23 25 chr15 8419373 8419433 -77276321 - MER61E LTR ERV1 -505 64 5 470 143 95 0 chr15 8419522 8419606 -77276148 - MER103 DNA DNA -44 122 31 2408 38 20 0 chr15 8419979 8420271 -77275483 + AluY SINE Alu 1 298 -13 202 0 91 0 chr15 8421773 8421806 -77273948 + T-rich Low_complexity Low_complexity 5 40 0 314 260 197 16 chr15 8422198 8422325 -77273429 + MIR3 SINE MIR 7 156 -52 239 195 0 91 chr15 8422523 8422600 -77273154 - L2 LINE L2 -9 3263 3194 2558 153 11 68 chr15 8422601 8422796 -77272958 - LTR54 LTR ERV1 0 510 305 2204 94 3 3 chr15 8422796 8423093 -77272661 - AluSp SINE Alu -16 297 1 2558 153 11 68 chr15 8423093 8423438 -77272316 - LTR54 LTR ERV1 -205 305 1 1764 164 55 7 chr15 8423438 8423748 -77272006 - MER89-int LTR ERV1 -393 7144 6820 1110 101 5 101 chr15 8423760 8423977 -77271777 - MER30 DNA MER1_type -33 197 2 464 293 107 19 chr15 8423979 8424194 -77271560 - MER89-int LTR ERV1 -712 6825 6592 338 197 0 0 chr15 8424249 8424310 -77271444 - MER89-int LTR ERV1 -697 4174 4114 4813 193 108 65 chr15 8424355 8424782 -77270972 - MER89-int LTR ERV1 -514 5817 5410 2283 92 0 0 chr15 8424782 8425085 -77270669 + AluSp SINE Alu 1 303 -10 4813 193 108 65 chr15 8425085 8425340 -77270414 - MER89-int LTR ERV1 -921 5410 5168 1562 173 20 13 chr15 8425340 8425641 -77270113 - AluJb SINE Alu -9 303 1 4813 193 108 65 chr15 8425641 8426087 -77269667 - MER89-int LTR ERV1 -1163 5168 4743 1665 127 31 55 chr15 8426087 8426428 -77269326 + AluSx SINE Alu 1 334 0 4813 193 108 65 chr15 8426428 8427492 -77268262 - MER89-int LTR ERV1 -1588 4743 2391 523 178 207 7 chr15 8427503 8427638 -77268116 - MER34C LTR ERV1 -255 330 169 706 190 0 36 chr15 8427723 8427860 -77267894 - AluJo SINE Alu -178 134 3 321 226 36 24 chr15 8427867 8427951 -77267803 - MER89-int LTR ERV1 -3352 2911 2827 722 209 62 67 chr15 8427994 8428391 -77267363 - MER89-int LTR ERV1 -2696 2427 1719 1738 219 62 68 chr15 8428405 8428669 -77267085 - MER89-int LTR ERV1 -2946 2278 2014 1834 136 0 34 chr15 8428669 8428987 -77266767 + AluSx SINE Alu 1 308 0 2304 141 34 69 chr15 8428997 8429391 -77266363 - MSTB1 LTR MaLR 0 432 54 2027 105 0 43 chr15 8429391 8429716 -77266038 - AluSx SINE Alu -1 311 1 2304 141 34 69 chr15 8429716 8429769 -77265985 - MSTB1 LTR MaLR -378 54 1 1738 219 62 68 chr15 8429769 8430568 -77265186 - MER89-int LTR ERV1 -3219 2005 1193 307 247 0 14 chr15 8430621 8430694 -77265060 + MER57-int LTR ERV1 548 619 -6918 325 279 110 41 chr15 8430774 8430993 -77264761 - MER34C LTR ERV1 -192 393 160 186 43 0 0 chr15 8431079 8431102 -77264652 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 822 153 0 0 chr15 8431107 8431225 -77264529 - FLAM_C SINE Alu -15 118 1 262 281 42 13 chr15 8431225 8431327 -77264427 - MER89-int LTR ERV1 -3220 2726 829 317 239 53 62 chr15 8431820 8431933 -77263821 - MER89-int LTR ERV1 -5432 1369 1258 272 228 17 173 chr15 8432157 8432446 -77263308 - MER89-int LTR ERV1 -6761 776 533 700 281 106 33 chr15 8432565 8432867 -77262887 - MER89-int LTR ERV1 -4079 2252 1929 1531 145 71 74 chr15 8432897 8433234 -77262520 - LTR54 LTR ERV1 0 510 175 2463 144 58 5 chr15 8433839 8434249 -77261505 - MSTB1 LTR MaLR 0 432 1 33 0 0 0 chr15 8434350 8434383 -77261371 + AT_rich Low_complexity Low_complexity 1 33 0 301 134 0 45 chr15 8434383 8434450 -77261304 - L1MA8 LINE L1 -3 6288 6225 3058 142 21 56 chr15 8434632 8434787 -77260967 - MER34C LTR ERV1 -2 583 424 2088 92 27 14 chr15 8434787 8435082 -77260672 - AluSp SINE Alu -14 299 1 3058 142 21 56 chr15 8435082 8435530 -77260224 - MER34C LTR ERV1 -161 424 1 267 182 182 0 chr15 8435591 8435646 -77260108 - MIR3 SINE MIR -52 156 92 190 236 138 49 chr15 8435840 8435963 -77259791 + L2 LINE L2 3094 3227 -86 1593 139 66 0 chr15 8436101 8436374 -77259380 - AluSx SINE Alu -9 303 13 310 146 0 18 chr15 8436376 8436431 -77259323 - AluSq/x SINE Alu -163 139 86 1171 149 33 14 chr15 8436433 8436647 -77259107 - AluSx SINE Alu -94 218 1 2672 100 11 0 chr15 8436773 8437133 -77258621 - THE1B LTR MaLR 0 364 1 2925 168 163 7 chr15 8438197 8438774 -77256980 - Tigger7 DNA MER2_type -1820 667 1 3805 147 11 72 chr15 8438802 8439538 -77256216 - LTR8 LTR ERV1 0 691 1 189 226 43 32 chr15 8439818 8439881 -77255873 - MIR SINE MIR -97 165 103 356 179 15 0 chr15 8440204 8440271 -77255483 - MER116 DNA Mariner 0 80 13 864 227 23 0 chr15 8440904 8441076 -77254678 - MER45A DNA AcHobo -2 176 1 226 301 41 0 chr15 8441761 8441834 -77253920 + MIR SINE MIR 45 120 -88 202 255 157 0 chr15 8442700 8442751 -77253003 + MIR SINE MIR 93 151 -111 2015 115 0 11 chr15 8442805 8443120 -77252634 - AluSx SINE Alu 0 312 1 497 239 30 138 chr15 8443446 8443642 -77252112 - L1M4 LINE L1 -3467 2679 2463 2082 122 0 3 chr15 8443642 8443953 -77251801 - AluSx SINE Alu -2 310 1 497 239 30 138 chr15 8443953 8444045 -77251709 - L1M4 LINE L1 -3683 2463 2423 2769 10 0 0 chr15 8444045 8444353 -77251401 - AluYa5 SINE Alu -3 308 1 497 239 30 138 chr15 8444353 8444368 -77251386 - L1M4 LINE L1 -3723 2423 2408 11323 214 59 60 chr15 8444373 8444594 -77251160 - L1MC2 LINE L1 -15 6609 6389 2208 104 0 13 chr15 8444594 8444910 -77250844 - AluSx SINE Alu 0 312 1 11323 214 59 60 chr15 8444910 8445127 -77250627 - L1MC2 LINE L1 -235 6389 6173 1910 148 0 3 chr15 8445127 8445430 -77250324 - AluSx SINE Alu -10 302 1 11323 214 59 60 chr15 8445430 8445494 -77250260 - L1MC2 LINE L1 -451 6173 6110 1652 150 0 4 chr15 8445494 8445771 -77249983 - AluSx SINE Alu 0 305 30 11323 214 59 60 chr15 8445771 8448553 -77247201 - L1MC2 LINE L1 -514 6110 3326 2021 121 7 0 chr15 8448553 8448850 -77246904 - AluSg1 SINE Alu -5 304 6 11323 214 59 60 chr15 8448850 8450527 -77245227 - L1MC2 LINE L1 -3298 3326 1648 2241 80 0 3 chr15 8450527 8450844 -77244910 - AluSp SINE Alu 0 316 1 11323 214 59 60 chr15 8450844 8450868 -77244886 - L1MC2 LINE L1 -4976 1648 1625 1222 167 32 137 chr15 8450868 8451276 -77244478 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8451276 8451511 -77244243 - L1MC2 LINE L1 -4999 1625 1391 2050 106 13 16 chr15 8451511 8451823 -77243931 - AluSx SINE Alu -1 311 1 11323 214 59 60 chr15 8451823 8452102 -77243652 - L1MC2 LINE L1 -5233 1391 1113 306 0 0 0 chr15 8452102 8452136 -77243618 + (TG)n Simple_repeat Simple_repeat 2 35 0 2074 123 0 10 chr15 8452137 8452302 -77243452 - AluSx SINE Alu -13 299 137 2204 95 0 0 chr15 8452302 8452598 -77243156 - AluSq SINE Alu -17 296 1 2074 123 0 10 chr15 8452598 8452734 -77243020 - AluSx SINE Alu -175 137 1 11323 214 59 60 chr15 8452734 8453164 -77242590 - L1MC2 LINE L1 -5511 1113 684 1776 138 22 0 chr15 8453164 8453475 -77242279 - AluSq SINE Alu 0 318 2 11323 214 59 60 chr15 8453475 8453673 -77242081 - L1MC2 LINE L1 -5940 684 487 1855 188 34 11 chr15 8453673 8454030 -77241724 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8454030 8454495 -77241259 - L1MC2 LINE L1 -6137 487 2 1949 124 0 10 chr15 8454540 8454830 -77240924 - AluSx SINE Alu -25 287 1 532 313 86 4 chr15 8454890 8455168 -77240586 - L1MEc LINE L1 -4579 1817 1517 1061 165 0 0 chr15 8455288 8455464 -77240290 + AluJo SINE Alu 119 294 -18 572 289 89 91 chr15 8455695 8456337 -77239417 + L2 LINE L2 2645 3313 0 1339 174 113 43 chr15 8456933 8457077 -77238677 - AluJo SINE Alu 0 302 170 2169 92 3 10 chr15 8457077 8457383 -77238371 - AluSg SINE Alu -6 304 1 1339 174 113 43 chr15 8457383 8457520 -77238234 - AluJo SINE Alu -132 170 1 545 284 97 40 chr15 8457865 8458341 -77237413 - HAL1 LINE L1 -1191 1316 814 1656 145 55 3 chr15 8459179 8459489 -77236265 + L1MA7 LINE L1 5960 6285 -6 2158 102 0 0 chr15 8459557 8459874 -77235880 + AluSx SINE Alu 1 317 0 2914 167 33 0 chr15 8459983 8460497 -77235257 - L1MB3 LINE L1 -101 6082 5552 512 273 32 18 chr15 8460615 8460835 -77234919 - L1MEc LINE L1 -4849 1547 1325 * 2340 73 22 3 chr15 8460833 8461150 -77234604 + L1PA13 LINE L1 5725 6047 -116 2515 116 108 28 chr15 8461150 8461583 -77234171 + LTR12 LTR ERV1 1 468 -246 439 209 69 0 chr15 8461613 8461727 -77234027 + L1PA13 LINE L1 6041 6161 -2 733 176 25 6 chr15 8462379 8462538 -77233216 + MER103 DNA DNA 3 164 -2 1775 110 24 0 chr15 8462825 8463079 -77232675 - AluSp SINE Alu -53 260 1 316 200 24 0 chr15 8464356 8464441 -77231313 + GA-rich Low_complexity Low_complexity 2 88 0 2118 106 0 10 chr15 8465565 8465866 -77229888 - AluSx SINE Alu -14 298 1 224 146 0 21 chr15 8465868 8465916 -77229838 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 517 68 0 0 chr15 8465917 8465991 -77229763 - Alu SINE Alu 0 311 238 1868 102 0 0 chr15 8466094 8466348 -77229406 + AluSx SINE Alu 55 308 -4 3015 217 39 18 chr15 8466353 8467193 -77228561 + L1MC5 LINE L1 2842 3699 -2447 1974 249 107 89 chr15 8467201 8467763 -77227991 + L1MC5 LINE L1 5425 5975 -1986 2163 108 10 0 chr15 8467763 8468068 -77227686 + AluSq SINE Alu 1 308 -5 1974 249 107 89 chr15 8468068 8468725 -77227029 + L1MC5 LINE L1 5975 6619 -1342 366 42 0 0 chr15 8468725 8468773 -77226981 + (CA)n Simple_repeat Simple_repeat 1 48 0 1974 249 107 89 chr15 8468773 8469305 -77226449 + L1MC5 LINE L1 6619 7184 -777 2421 65 0 3 chr15 8469305 8469612 -77226142 + AluY SINE Alu 1 306 -5 1974 249 107 89 chr15 8469612 8469813 -77225941 + L1MC5 LINE L1 7184 7380 -581 2183 101 0 0 chr15 8470358 8470654 -77225100 - AluSx SINE Alu -2 310 15 783 219 193 0 chr15 8470660 8470898 -77224856 - MER33 DNA MER1_type -40 284 1 215 245 163 10 chr15 8471587 8471685 -77224069 + MIR SINE MIR 36 148 -114 250 245 324 0 chr15 8473191 8473293 -77222461 + L1ME4a LINE L1 5530 5664 -457 239 303 0 0 chr15 8473345 8473421 -77222333 + L1ME4a LINE L1 5734 5809 -361 389 315 85 47 chr15 8473430 8473665 -77222089 + L1ME4a LINE L1 5874 6117 -4 430 135 0 0 chr15 8473679 8473753 -77222001 - L1MA4 LINE L1 -6 6294 6221 2154 92 16 3 chr15 8473824 8474128 -77221626 + AluSc SINE Alu 1 308 -1 201 94 0 0 chr15 8474780 8474812 -77220942 + (TG)n Simple_repeat Simple_repeat 2 33 0 1897 107 38 17 chr15 8475756 8476045 -77219709 - AluSx SINE Alu -17 295 1 1116 193 3 134 chr15 8476069 8476450 -77219304 - MER33 DNA MER1_type -4 320 1 306 247 82 87 chr15 8476556 8476775 -77218979 - L1ME LINE L1 -302 5819 5602 403 186 20 10 chr15 8478016 8478118 -77217636 + CT-rich Low_complexity Low_complexity 3 105 0 2157 118 0 6 chr15 8478122 8478437 -77217317 - AluSq SINE Alu 0 313 1 2244 79 0 7 chr15 8478485 8478796 -77216958 - AluSx SINE Alu 0 312 1 4653 186 27 21 chr15 8478813 8480294 -77215460 - L1MB5 LINE L1 -8 6166 4680 2033 128 3 3 chr15 8480296 8480602 -77215152 + AluSx SINE Alu 1 306 -6 442 226 182 13 chr15 8480757 8480916 -77214838 - L1MB5 LINE L1 -1729 4417 4232 2329 101 0 0 chr15 8480919 8481227 -77214527 - AluSx SINE Alu -4 308 1 728 282 114 21 chr15 8481252 8481626 -77214128 - L1ME3A LINE L1 -192 5972 5571 187 179 95 53 chr15 8481974 8482069 -77213685 + L2 LINE L2 2921 3019 -253 207 0 0 0 chr15 8482075 8482098 -77213656 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 216 0 0 0 chr15 8482353 8482377 -77213377 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 533 326 41 9 chr15 8483206 8483427 -77212327 - MIR SINE MIR -34 228 1 2147 126 0 0 chr15 8483540 8483849 -77211905 - AluSg SINE Alu -1 309 1 351 265 29 29 chr15 8484387 8484523 -77211231 - MER69A DNA AcHobo -14 163 28 508 169 169 14 chr15 8485061 8485203 -77210551 - MER96B DNA MER1_type? -241 176 13 3622 126 60 27 chr15 8485555 8486152 -77209602 - LTR12 LTR ERV1 -97 617 1 4000 167 102 20 chr15 8486195 8486653 -77209101 - L1MB3 LINE L1 0 6183 5764 2261 75 0 31 chr15 8486653 8486974 -77208780 + AluY SINE Alu 1 311 0 4000 167 102 20 chr15 8486974 8487424 -77208330 - L1MB3 LINE L1 -419 5764 5201 305 309 73 12 chr15 8489036 8489201 -77206553 - L1ME4a LINE L1 -3 6118 5944 2126 92 3 49 chr15 8489218 8489545 -77206209 + AluSx SINE Alu 1 312 0 2262 158 92 15 chr15 8489558 8490015 -77205739 + L1MB7 LINE L1 5693 6184 0 188 340 11 64 chr15 8490257 8490351 -77205403 - MIR SINE MIR -45 217 129 319 264 56 0 chr15 8491271 8491396 -77204358 + L2 LINE L2 1707 1838 -1476 195 286 0 0 chr15 8491749 8491791 -77203963 - MIR SINE MIR -115 147 106 186 254 45 0 chr15 8492624 8492691 -77203063 - L2 LINE L2 -247 3066 2997 351 230 0 66 chr15 8493451 8493603 -77202151 + G-rich Low_complexity Low_complexity 3 144 0 3183 219 109 16 chr15 8493632 8494507 -77201247 - L1MC4 LINE L1 -432 7610 6655 1314 241 92 50 chr15 8494512 8495013 -77200741 + MLT1F LTR MaLR 21 542 0 1300 226 80 12 chr15 8495019 8495355 -77200399 - L1MC4 LINE L1 -1340 6702 6344 390 150 28 39 chr15 8496294 8496474 -77199280 + (CA)n Simple_repeat Simple_repeat 1 178 0 1479 242 38 10 chr15 8498387 8498771 -77196983 + L1MB8 LINE L1 89 553 -6302 * 8233 220 52 20 chr15 8498768 8502233 -77193521 + L1MB8 LINE L1 3110 6465 -524 297 0 0 0 chr15 8502233 8502266 -77193488 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 351 0 0 0 chr15 8502265 8502304 -77193450 + (TA)n Simple_repeat Simple_repeat 1 39 0 8233 220 52 20 chr15 8502266 8502305 -77193449 + L1MB8 LINE L1 6465 6501 -488 2073 124 0 0 chr15 8502305 8502603 -77193151 - AluSx SINE Alu -14 298 1 8233 220 52 20 chr15 8502603 8502660 -77193094 + L1MB8 LINE L1 6501 6977 -12 193 187 11 66 chr15 8502669 8502760 -77192994 + GA-rich Low_complexity Low_complexity 3 88 0 1397 180 0 31 chr15 8503436 8503697 -77192057 + AluJb SINE Alu 13 265 -47 802 152 5 105 chr15 8505129 8505298 -77190456 - MER53 DNA DNA 0 189 43 2025 177 11 30 chr15 8505298 8505515 -77190239 - MLT1A1 LTR MaLR 0 365 156 2193 103 3 10 chr15 8505515 8505825 -77189929 - AluSq SINE Alu -5 308 1 2025 177 11 30 chr15 8505825 8505979 -77189775 - MLT1A1 LTR MaLR -209 156 1 802 152 5 105 chr15 8505979 8506019 -77189735 - MER53 DNA DNA -146 43 1 248 338 149 14 chr15 8506613 8506761 -77188993 - MIR SINE MIR -1 261 94 2814 181 68 10 chr15 8507252 8507843 -77187911 - L1MD1 LINE L1 0 6242 5618 206 241 19 19 chr15 8509418 8509472 -77186282 + L2 LINE L2 3214 3267 -5 201 303 117 56 chr15 8510109 8510271 -77185483 - MIR SINE MIR -59 203 32 1893 147 26 10 chr15 8510531 8510837 -77184917 + AluJb SINE Alu 1 311 -1 2234 102 0 9 chr15 8512296 8512611 -77183143 + AluSq SINE Alu 1 312 -1 348 217 15 31 chr15 8514120 8514387 -77181367 + (TG)n Simple_repeat Simple_repeat 1 262 0 1756 177 0 3 chr15 8514577 8514882 -77180872 + AluJo SINE Alu 1 304 -8 2015 118 10 14 chr15 8515188 8515485 -77180269 - AluSx SINE Alu -16 296 1 1552 158 67 64 chr15 8516194 8516568 -77179186 - THE1C LTR MaLR 0 375 1 2579 76 12 3 chr15 8516739 8517083 -77178671 - L1PA13 LINE L1 -12 6151 5805 312 317 19 0 chr15 8517212 8517316 -77178438 - HAL1 LINE L1 -711 1796 1691 591 143 0 0 chr15 8517454 8517538 -77178216 - AluS SINE Alu -228 85 2 749 158 0 0 chr15 8517553 8517680 -77178074 - L1M4 LINE L1 -1117 5029 4903 908 339 128 17 chr15 8517821 8518534 -77177220 - L2 LINE L2 -564 2750 1959 264 325 17 8 chr15 8519241 8519358 -77176396 + (TG)n Simple_repeat Simple_repeat 1 118 0 227 302 16 0 chr15 8519526 8519589 -77176165 + GA-rich Low_complexity Low_complexity 3 66 0 1684 158 4 0 chr15 8521203 8521482 -77174272 - AluJb SINE Alu -12 300 21 240 35 0 0 chr15 8521741 8521770 -77173984 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1902 129 11 0 chr15 8521773 8522051 -77173703 - AluSx SINE Alu -31 281 1 465 270 131 42 chr15 8525003 8525182 -77170572 - L1M4 LINE L1 -2673 3473 3311 2096 122 0 26 chr15 8525182 8525494 -77170260 - AluSx SINE Alu -8 304 1 465 270 131 42 chr15 8525494 8525978 -77169776 - L1M4 LINE L1 -2835 3311 2751 22 0 0 0 chr15 8526175 8526197 -77169557 + AT_rich Low_complexity Low_complexity 1 22 0 2188 60 4 0 chr15 8526493 8526797 -77168957 + AluY SINE Alu 1 305 0 229 328 92 8 chr15 8526871 8527002 -77168752 + MIR SINE MIR 70 211 -51 211 200 0 0 chr15 8527764 8527799 -77167955 + polypurine Low_complexity Low_complexity 1 35 0 880 128 44 61 chr15 8528355 8528535 -77167219 - L1MCa LINE L1 -5736 690 514 2217 69 17 3 chr15 8528535 8528825 -77166929 + AluY SINE Alu 1 294 -17 282 277 71 19 chr15 8529061 8529216 -77166538 - L1ME3A LINE L1 -15 6155 5993 190 293 67 0 chr15 8529299 8529374 -77166380 + L2 LINE L2 3137 3216 -56 550 350 35 0 chr15 8529914 8530114 -77165640 - MIR SINE MIR -28 234 28 711 271 30 48 chr15 8530669 8530984 -77164770 + L1MEc LINE L1 1426 1747 -829 31 26 0 0 chr15 8531173 8531211 -77164543 + AT_rich Low_complexity Low_complexity 1 38 0 1926 115 4 4 chr15 8531243 8531550 -77164204 - AluSx SINE Alu 0 312 6 227 250 140 30 chr15 8533339 8533439 -77162315 + MER5A DNA MER1_type 74 184 -5 388 200 0 24 chr15 8533585 8533670 -77162084 - MER69 DNA AcHobo -1135 91 9 892 117 0 29 chr15 8534539 8534676 -77161078 + AluSq/x SINE Alu 1 133 -179 1796 150 3 7 chr15 8534679 8534985 -77160769 + AluSx SINE Alu 1 305 -7 326 246 234 50 chr15 8535327 8535648 -77160106 - LTR16A1 LTR ERVL -77 380 1 224 250 164 39 chr15 8536783 8536887 -77158867 + L3b LINE CR1 1334 1450 -133 225 221 12 23 chr15 8537513 8537599 -77158155 + (TA)n Simple_repeat Simple_repeat 2 86 0 180 0 0 0 chr15 8537959 8537979 -77157775 + (A)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 8540549 8540569 -77155185 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1029 69 0 50 chr15 8541199 8541359 -77154395 - AluY SINE Alu -3 308 157 385 333 8 0 chr15 8542237 8542357 -77153397 - MIR3 SINE MIR -3 205 85 198 284 52 75 chr15 8544357 8544491 -77151263 + L2 LINE L2 3139 3269 -3 283 308 155 23 chr15 8546243 8546936 -77148818 + L2 LINE L2 2383 3248 -24 1361 152 45 26 chr15 8546943 8547207 -77148547 - AluJo SINE Alu -1 311 43 934 142 0 8 chr15 8547503 8547637 -77148117 - FLAM_C SINE Alu -10 133 1 2057 145 0 7 chr15 8548258 8548568 -77147186 - AluJo SINE Alu 0 312 5 1297 145 20 5 chr15 8550017 8550217 -77145537 + AluSq SINE Alu 1 203 -110 565 75 0 0 chr15 8550217 8550284 -77145470 + AluSq/x SINE Alu 69 135 -178 2091 115 13 13 chr15 8550284 8550588 -77145166 + AluSx SINE Alu 1 304 -8 1897 134 36 0 chr15 8551030 8551307 -77144447 + AluSx SINE Alu 1 287 -25 2081 124 13 3 chr15 8551315 8551621 -77144133 + AluSq SINE Alu 1 309 -4 2223 98 3 0 chr15 8551635 8551968 -77143786 + AluSx SINE Alu 1 334 0 2314 72 0 14 chr15 8552673 8552963 -77142791 - AluSx SINE Alu -26 286 1 243 0 0 0 chr15 8552996 8553023 -77142731 + (TG)n Simple_repeat Simple_repeat 2 28 0 197 241 108 24 chr15 8554012 8554095 -77141659 - L2 LINE L2 -522 2792 2703 2214 107 3 19 chr15 8554209 8554526 -77141228 - AluSx SINE Alu 0 312 1 4740 212 49 72 chr15 8554950 8556278 -77139476 + L1M4 LINE L1 1 1297 -5245 3537 220 33 20 chr15 8556300 8556341 -77139413 + L1M4 LINE L1 1239 1278 -5368 1731 142 9 99 chr15 8556341 8556673 -77139081 + AluJo SINE Alu 1 302 0 3537 220 33 20 chr15 8556673 8557686 -77138068 + L1M4 LINE L1 1278 2397 -4249 918 145 0 0 chr15 8557688 8557819 -77137935 + AluSx SINE Alu 1 131 -182 1009 139 0 13 chr15 8557925 8558083 -77137671 + AluSx SINE Alu 140 295 -14 3508 230 23 20 chr15 8558085 8558195 -77137559 + L1M4 LINE L1 2389 2497 -4147 788 220 0 0 chr15 8558195 8558327 -77137427 + FLAM_A SINE Alu 1 132 -1 3508 230 23 20 chr15 8558327 8559376 -77136378 + L1M4 LINE L1 2497 3547 -3097 3801 233 68 38 chr15 8559451 8560406 -77135348 + L1MDb LINE L1 775 1750 -4656 738 194 8 0 chr15 8560406 8560535 -77135219 - FLAM_A SINE Alu -3 130 1 3801 233 68 38 chr15 8560535 8561036 -77134718 + L1MDb LINE L1 1750 2234 -4172 3581 223 73 60 chr15 8561050 8562054 -77133700 + L1M4 LINE L1 4118 5107 -1557 438 69 0 0 chr15 8562054 8562112 -77133642 + (TTG)n Simple_repeat Simple_repeat 2 59 0 785 174 0 0 chr15 8562114 8562229 -77133525 - FLAM_C SINE Alu -28 115 1 3581 223 73 60 chr15 8562229 8563256 -77132498 + L1M4 LINE L1 5107 6286 -378 2240 99 0 0 chr15 8563272 8563582 -77132172 + AluSx SINE Alu 2 311 0 204 118 29 0 chr15 8564272 8564306 -77131448 + G-rich Low_complexity Low_complexity 4 38 0 2185 105 0 0 chr15 8564609 8564929 -77130825 - AluSx SINE Alu 0 320 1 22 35 0 0 chr15 8565953 8565982 -77129772 + AT_rich Low_complexity Low_complexity 1 29 0 674 241 55 19 chr15 8566210 8566391 -77129363 + MIR SINE MIR 12 192 -62 1027 121 0 0 chr15 8568282 8568414 -77127340 + FLAM_C SINE Alu 2 133 0 330 287 101 32 chr15 8570774 8570962 -77124792 - L1ME3A LINE L1 0 6170 5970 595 153 40 48 chr15 8570982 8571106 -77124648 - MLT1G LTR MaLR 0 590 468 881 200 40 0 chr15 8571107 8571257 -77124497 + MER63A DNA MER1_type 55 210 0 1276 244 168 21 chr15 8571257 8571643 -77124111 - MLT1G LTR MaLR -130 460 18 2250 62 24 0 chr15 8571643 8571934 -77123820 - AluYa5 SINE Alu -13 298 1 1392 226 108 46 chr15 8572030 8572551 -77123203 - L1MC5 LINE L1 -430 7531 6979 794 191 31 6 chr15 8572553 8572715 -77123039 + MLT1A2 LTR MaLR 209 374 0 2146 99 19 19 chr15 8572861 8573173 -77122581 - AluSx SINE Alu 0 312 1 669 285 40 59 chr15 8573178 8573634 -77122120 - HAL1b LINE L1 -841 507 61 2583 62 0 0 chr15 8574053 8574362 -77121392 - AluY SINE Alu -2 309 1 995 265 189 28 chr15 8575096 8575730 -77120024 + L2 LINE L2 2549 3313 0 1886 109 0 7 chr15 8575894 8576168 -77119586 + AluSx SINE Alu 40 311 -1 1381 215 25 104 chr15 8576299 8576703 -77119051 + MLT1A2 LTR MaLR 3 374 0 827 198 18 12 chr15 8577006 8577173 -77118581 + AluJb SINE Alu 122 289 -23 312 242 85 103 chr15 8577717 8577940 -77117814 + L1M2 LINE L1 1181 1399 -5450 614 147 55 156 chr15 8579418 8579656 -77116098 - MER20 DNA MER1_type -5 214 1 2440 57 0 10 chr15 8579864 8580162 -77115592 + AluY SINE Alu 1 295 -16 23 0 0 0 chr15 8580284 8580307 -77115447 + AT_rich Low_complexity Low_complexity 1 23 0 2373 70 13 16 chr15 8580731 8581043 -77114711 - AluSq SINE Alu -2 311 1 233 35 0 0 chr15 8581248 8581277 -77114477 - U7 snRNA snRNA -33 30 2 2033 228 42 40 chr15 8631312 8631904 -77063850 - L1MC3 LINE L1 -709 7076 6484 1063 222 43 0 chr15 8632222 8632429 -77063325 - MER58A DNA MER1_type 0 224 9 1576 98 98 70 chr15 8632708 8632993 -77062761 - AluSx SINE Alu -19 293 1 275 359 36 24 chr15 8633495 8633662 -77062092 + MIR SINE MIR 20 188 -74 400 273 49 33 chr15 8633881 8634064 -77061690 - L2 LINE L2 0 3313 3128 2183 64 4 4 chr15 8634536 8634846 -77060908 - AluY SINE Alu 0 310 1 1318 220 43 69 chr15 8634870 8635288 -77060466 + MLT1C LTR MaLR 3 409 -58 489 183 75 0 chr15 8635287 8635364 -77060390 - MLT2D LTR ERVL -183 231 148 2231 150 106 10 chr15 8635364 8635751 -77060003 - MSTB1 LTR MaLR 0 432 9 729 193 40 0 chr15 8635757 8635907 -77059847 - MLT2D LTR ERVL -254 160 5 1549 163 52 7 chr15 8635910 8636217 -77059537 - ERVL-D LTR ERVL -7 5757 5437 2244 225 39 4 chr15 8636300 8636811 -77058943 - ERVL-D LTR ERVL -320 5444 4916 * 9918 216 42 7 chr15 8636799 8638812 -77056942 - ERVL-D LTR ERVL -1313 4451 2367 2398 65 31 0 chr15 8638812 8639106 -77056648 - AluY SINE Alu -8 303 1 2091 175 95 5 chr15 8639113 8639524 -77056230 - L1MC1 LINE L1 -9 6324 5877 1386 251 50 19 chr15 8639505 8639923 -77055831 - L1M4 LINE L1 -1008 5138 4708 * 2818 225 17 20 chr15 8639928 8640375 -77055379 - ERVL-D LTR ERVL -3391 2373 1927 2147 132 0 6 chr15 8640375 8640686 -77055068 + AluSg SINE Alu 1 309 -1 2818 225 17 20 chr15 8640686 8640837 -77054917 - ERVL-D LTR ERVL -3837 1927 1777 11367 191 14 5 chr15 8640855 8642928 -77052826 + ERVL-B1 LTR ERVL 3668 5757 -7 1462 212 14 98 chr15 8642928 8643348 -77052406 + MLT2B1 LTR ERVL 1 385 -135 586 281 17 17 chr15 8643353 8643531 -77052223 + Ricksha DNA DNA 727 904 -2342 357 253 72 75 chr15 8644043 8644128 -77051626 + L1M4b LINE L1 11 95 -6764 2589 66 0 0 chr15 8644128 8644433 -77051321 - AluY SINE Alu -6 305 1 357 253 72 75 chr15 8644433 8644579 -77051175 + L1M4b LINE L1 95 241 -6618 251 319 60 0 chr15 8644585 8644701 -77051053 + L1M4b LINE L1 700 822 -6037 1413 277 41 76 chr15 8644717 8645013 -77050741 + L1M4b LINE L1 798 1103 -5752 2504 63 0 0 chr15 8645013 8645315 -77050439 - AluY SINE Alu -9 302 1 1413 277 41 76 chr15 8645315 8646070 -77049684 + L1M4b LINE L1 1103 1812 -5043 384 303 66 31 chr15 8646242 8646724 -77049030 - L1M4 LINE L1 -2392 3754 3256 2308 92 7 0 chr15 8646750 8647053 -77048701 + AluSx SINE Alu 1 305 -7 2494 84 0 0 chr15 8647071 8647380 -77048374 + AluY SINE Alu 3 311 0 630 202 229 0 chr15 8647392 8647580 -77048174 - LTR39 LTR ERV1 -552 231 1 3692 197 30 77 chr15 8647580 8648631 -77047123 - HERVL74 LTR ERVL -809 4876 3875 592 187 168 0 chr15 8648631 8648786 -77046968 - LTR47A LTR ERVL -11 441 261 737 244 38 14 chr15 8649417 8649626 -77046128 - HERVL74 LTR ERVL -1936 3749 3536 904 282 57 4 chr15 8649637 8649917 -77045837 - HERVL74 LTR ERVL -2261 3424 3130 1596 224 9 3 chr15 8649927 8650276 -77045478 + MLT1A1 LTR MaLR 15 365 0 3870 213 41 63 chr15 8650280 8650881 -77044873 + MLT1A1-int LTR MaLR 4 617 -1118 1571 196 0 41 chr15 8650881 8651172 -77044582 + AluJo SINE Alu 3 281 -31 204 40 0 0 chr15 8651172 8651197 -77044557 + (GGAGAA)n Simple_repeat Simple_repeat 3 27 0 3870 213 41 63 chr15 8651197 8651715 -77044039 + MLT1A1-int LTR MaLR 615 1099 -636 1574 218 33 3 chr15 8651720 8652051 -77043703 + MLT1A1 LTR MaLR 25 365 0 1079 209 25 0 chr15 8652051 8652286 -77043468 - HERVL74 LTR ERVL -3657 2028 1788 1815 176 22 6 chr15 8652289 8652652 -77043102 + LTR57 LTR ERVL 3 371 -40 201 343 29 0 chr15 8653479 8653549 -77042205 + L2 LINE L2 3186 3257 -15 1488 166 22 47 chr15 8654164 8654484 -77041270 - AluJb SINE Alu 0 312 1 243 304 247 15 chr15 8657171 8657434 -77038320 + L3 LINE CR1 1244 1567 -10 207 391 45 30 chr15 8657839 8657972 -77037782 - L2 LINE L2 -44 3228 3094 763 224 84 70 chr15 8660148 8660447 -77035307 + L2 LINE L2 3008 3310 -3 440 297 94 42 chr15 8661781 8661993 -77033761 - MIR SINE MIR -26 236 14 387 0 0 0 chr15 8662032 8662075 -77033679 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 371 64 50 chr15 8662349 8662489 -77033265 - L2 LINE L2 -5 3267 3126 22 35 0 0 chr15 8663326 8663355 -77032399 + AT_rich Low_complexity Low_complexity 1 29 0 202 241 161 46 chr15 8665460 8665547 -77030207 + MER5B DNA MER1_type 3 99 -79 521 273 119 92 chr15 8666381 8666718 -77029036 - L1M4 LINE L1 -1972 4174 3829 384 77 0 0 chr15 8666917 8666969 -77028785 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2117 89 3 28 chr15 8666969 8667260 -77028494 - AluY SINE Alu -26 285 2 740 133 0 16 chr15 8667404 8667532 -77028222 + MER3 DNA MER1_type 67 192 -17 2180 93 7 23 chr15 8669069 8669369 -77026385 + AluSx SINE Alu 1 295 -17 216 67 0 0 chr15 8669561 8669591 -77026163 + (GGA)n Simple_repeat Simple_repeat 3 32 0 30 45 0 0 chr15 8669832 8669876 -77025878 + AT_rich Low_complexity Low_complexity 1 44 0 810 230 90 22 chr15 8669923 8670288 -77025466 - L1MC5 LINE L1 -304 7657 7268 442 257 104 25 chr15 8670452 8670693 -77025061 - L1MC5 LINE L1 -745 7216 6957 493 329 69 83 chr15 8672735 8672891 -77022863 + L2 LINE L2 2842 2999 -273 2068 101 61 0 chr15 8672891 8673169 -77022585 - AluSx SINE Alu -17 295 1 493 329 69 83 chr15 8673169 8673447 -77022307 + L2 LINE L2 2999 3270 -2 641 316 53 4 chr15 8673920 8674167 -77021587 + L2 LINE L2 2815 3073 -240 537 214 0 0 chr15 8674258 8674361 -77021393 + U6 snRNA snRNA 4 106 -1 2297 81 0 3 chr15 8675042 8675340 -77020414 + AluSg SINE Alu 3 299 -11 363 250 173 10 chr15 8675583 8675687 -77020067 + L2 LINE L2 3193 3313 0 1122 224 97 24 chr15 8677077 8677457 -77018297 - L1MD2 LINE L1 -13 6346 5939 2311 102 0 0 chr15 8677520 8677813 -77017941 + AluSx SINE Alu 1 293 -19 563 198 78 0 chr15 8677825 8677941 -77017813 + FLAM_C SINE Alu 1 125 -18 1369 205 31 14 chr15 8677951 8678244 -77017510 + AluJo SINE Alu 1 298 -14 334 194 9 4 chr15 8678289 8678397 -77017357 + Tigger5 DNA MER2_type 44 199 -2124 2156 105 24 0 chr15 8678811 8679106 -77016648 + AluSx SINE Alu 1 302 -10 1807 172 30 15 chr15 8679531 8679868 -77015886 - MER2 DNA MER2_type -1 343 2 2306 95 0 3 chr15 8679926 8680222 -77015532 - AluSx SINE Alu -17 295 1 1471 150 213 8 chr15 8680533 8680933 -77014821 - L1MB7 LINE L1 0 6184 5703 * 1704 225 135 16 chr15 8680931 8681679 -77014075 - L1M4 LINE L1 -1638 4508 3638 360 182 0 0 chr15 8684377 8684443 -77011311 - MER92C LTR ERV1 0 554 489 1140 161 0 0 chr15 8684629 8684803 -77010951 + AluJb SINE Alu 109 282 -30 1903 159 7 3 chr15 8685585 8685881 -77009873 - AluJb SINE Alu -15 297 1 2367 86 0 13 chr15 8686025 8686328 -77009426 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 8687512 8687533 -77008221 + AT_rich Low_complexity Low_complexity 1 21 0 2231 88 3 14 chr15 8692411 8692708 -77003046 - AluY SINE Alu -17 294 1 2212 103 0 19 chr15 8692850 8693160 -77002594 + AluSx SINE Alu 1 304 -8 1839 189 88 8 chr15 8693628 8694015 -77001739 + MER47B DNA MER2_type 1 418 0 266 286 125 72 chr15 8694094 8694349 -77001405 + L2 LINE L2 2670 3046 -267 240 222 56 0 chr15 8694416 8694470 -77001284 + L2 LINE L2 3196 3252 -61 422 266 95 6 chr15 8694536 8694922 -77000832 + L1MEc LINE L1 1226 1672 -4724 1210 112 77 0 chr15 8694924 8695120 -77000634 + MER2 DNA MER2_type 1 211 -134 460 248 58 15 chr15 8695235 8695270 -77000484 + L1MEc LINE L1 1675 1707 -4689 1848 168 0 7 chr15 8695270 8695568 -77000186 - AluJb SINE Alu 0 312 17 460 248 58 15 chr15 8695568 8695669 -77000085 + L1MEc LINE L1 1707 1817 -4579 629 233 149 4 chr15 8695674 8695923 -76999831 + L1MEc LINE L1 1856 2140 -4256 987 185 11 38 chr15 8695929 8696113 -76999641 + AluJb SINE Alu 1 179 -133 4487 228 99 18 chr15 8696113 8696569 -76999185 + L1MEc LINE L1 2168 2585 -3630 1582 162 86 14 chr15 8696569 8696859 -76998895 + AluJb SINE Alu 1 311 -1 4487 228 99 18 chr15 8696859 8697588 -76998166 + L1MEc LINE L1 2585 3492 -2723 2080 114 13 35 chr15 8697588 8697905 -76997849 + AluSx SINE Alu 1 310 -2 4487 228 99 18 chr15 8697905 8698254 -76997500 + L1MEc LINE L1 3492 3811 -2404 2799 209 75 26 chr15 8698291 8698366 -76997388 + L1MB4 LINE L1 4540 4610 -1536 2448 80 0 0 chr15 8698366 8698668 -76997086 - AluY SINE Alu -9 302 1 2799 209 75 26 chr15 8698668 8699328 -76996426 + L1MB4 LINE L1 4610 5311 -835 1374 52 29 0 chr15 8699401 8699575 -76996179 - L1MA1 LINE L1 -6 6296 6118 451 232 99 91 chr15 8699595 8699865 -76995889 + MLT1E LTR MaLR 41 312 -255 459 40 100 24 chr15 8700549 8700801 -76994953 + (TA)n Simple_repeat Simple_repeat 1 271 0 * 476 91 57 34 chr15 8700765 8700940 -76994814 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 231 68 54 40 chr15 8700979 8701053 -76994701 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 283 194 0 42 chr15 8701058 8701130 -76994624 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr15 8702065 8702099 -76993655 + (CA)n Simple_repeat Simple_repeat 1 34 0 206 279 98 74 chr15 8702315 8702437 -76993317 - MER5A DNA MER1_type 0 189 65 821 156 0 0 chr15 8703379 8703507 -76992247 - AluJb SINE Alu -13 299 172 461 152 0 0 chr15 8703507 8703573 -76992181 - AluJ/FLAM SINE Alu -244 68 3 2851 204 63 26 chr15 8706049 8706774 -76988980 + L1MB4 LINE L1 5428 6179 -1 1877 142 3 65 chr15 8709499 8709822 -76985932 + AluJb SINE Alu 1 303 -9 1583 190 36 18 chr15 8710288 8710619 -76985135 + MER58B DNA MER1_type 5 341 0 2426 150 17 74 chr15 8710677 8710889 -76984865 + Tigger2a DNA MER2_type 1 223 -2485 2280 118 7 0 chr15 8710889 8711195 -76984559 - AluSx SINE Alu -4 308 1 2431 71 10 0 chr15 8711203 8711500 -76984254 - AluSp SINE Alu -8 305 6 2426 150 17 74 chr15 8711500 8711738 -76984016 + Tigger2a DNA MER2_type 230 434 0 222 118 0 0 chr15 8712726 8712760 -76982994 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 304 279 162 35 chr15 8713191 8713567 -76982187 + L2 LINE L2 2187 2610 -704 382 330 118 9 chr15 8713567 8713916 -76981838 + L2 LINE L2 2884 3270 -2 414 239 157 0 chr15 8714199 8714333 -76981421 - MIR SINE MIR 0 262 108 4558 93 27 37 chr15 8714866 8714996 -76980758 - L1MA5 LINE L1 -2 6298 6168 710 225 0 0 chr15 8714996 8715116 -76980638 - FLAM_A SINE Alu -13 120 1 4558 93 27 37 chr15 8715116 8715694 -76980060 - L1MA5 LINE L1 -132 6168 5597 1998 125 30 13 chr15 8715938 8716241 -76979513 + AluJb SINE Alu 1 308 -4 2303 138 12 0 chr15 8717224 8717558 -76978196 - MER1B DNA MER1_type 0 339 2 1038 154 109 25 chr15 8717718 8717919 -76977835 - MER20 DNA MER1_type 0 219 2 472 219 18 0 chr15 8717953 8718067 -76977687 + ERVL LTR ERVL 2291 2406 -3358 2392 98 0 0 chr15 8718524 8718821 -76976933 - AluSg SINE Alu -13 297 1 21 36 0 0 chr15 8719998 8720026 -76975728 + AT_rich Low_complexity Low_complexity 1 28 0 543 338 113 5 chr15 8720525 8720942 -76974812 - L2 LINE L2 -1 3312 2851 2343 77 18 0 chr15 8721753 8722039 -76973715 - AluSp SINE Alu -22 291 1 2402 96 0 0 chr15 8723054 8723367 -76972387 - AluSq SINE Alu 0 313 1 916 170 0 30 chr15 8723369 8723534 -76972220 + AluJo/FRAM SINE Alu 148 307 -5 796 202 91 29 chr15 8727214 8727359 -76968395 + MER63 DNA MER1_type 838 1001 -60 2538 75 0 0 chr15 8727359 8727667 -76968087 - AluY SINE Alu -3 308 1 796 202 91 29 chr15 8727667 8727729 -76968025 + MER63 DNA MER1_type 1001 1058 -3 196 398 8 8 chr15 8727737 8727860 -76967894 + L2 LINE L2 3191 3313 0 584 235 121 95 chr15 8727900 8728312 -76967442 - L2 LINE L2 -5 3308 2886 934 225 6 0 chr15 8728360 8728542 -76967212 - MER58A DNA MER1_type 0 224 42 345 222 159 16 chr15 8728577 8728703 -76967051 - L2 LINE L2 -504 2810 2667 2350 85 3 0 chr15 8728709 8729002 -76966752 + AluY SINE Alu 1 294 -17 1729 215 80 5 chr15 8729002 8729425 -76966329 + L1MB5 LINE L1 5598 6052 -122 2144 120 10 0 chr15 8729906 8730198 -76965556 + AluSx SINE Alu 2 296 -16 483 208 88 0 chr15 8731180 8731305 -76964449 + L1MC3 LINE L1 5195 5330 -816 1802 206 57 4 chr15 8731308 8731968 -76963786 + L1MD2 LINE L1 4849 5545 -743 949 146 11 22 chr15 8731991 8732169 -76963585 + L1MD1 LINE L1 6062 6237 -5 2478 185 40 57 chr15 8732171 8732219 -76963535 + L1MC3 LINE L1 5319 5366 -2419 2446 62 0 10 chr15 8732219 8732528 -76963226 + AluY SINE Alu 1 306 -5 2478 185 40 57 chr15 8732528 8733129 -76962625 + L1MC3 LINE L1 5366 5957 -1828 576 154 31 15 chr15 8733282 8733412 -76962342 - AluSp SINE Alu -180 133 2 552 152 18 9 chr15 8733440 8733552 -76962202 + AluJb SINE Alu 2 114 -198 1628 158 0 45 chr15 8733554 8733864 -76961890 - AluSp SINE Alu -17 296 1 885 98 30 0 chr15 8733871 8734003 -76961751 - AluSp SINE Alu -177 136 1 928 196 11 0 chr15 8734033 8734222 -76961532 + AluJb SINE Alu 118 308 -4 1462 98 0 0 chr15 8735373 8735557 -76960197 + AluSx SINE Alu 2 185 -127 1868 234 67 38 chr15 8735680 8735722 -76960032 + L1MD2 LINE L1 5551 5590 -769 180 0 0 0 chr15 8735722 8735742 -76960012 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1868 234 67 38 chr15 8735742 8736033 -76959721 + L1MD2 LINE L1 5590 5912 -447 2211 89 0 3 chr15 8736033 8736353 -76959401 + AluSc SINE Alu 1 319 0 1868 234 67 38 chr15 8736353 8736599 -76959155 + L1MD2 LINE L1 5912 6149 -210 462 173 0 0 chr15 8736802 8736881 -76958873 - MER2 DNA MER2_type -135 210 132 1604 159 5 66 chr15 8736881 8737304 -76958450 - MER1B DNA MER1_type 0 339 3 706 182 8 0 chr15 8737311 8737432 -76958322 - MER2 DNA MER2_type -222 123 2 359 203 8 73 chr15 8737433 8737556 -76958198 + L1MD3 LINE L1 7868 7982 -13 2588 58 3 0 chr15 8737556 8737864 -76957890 + AluY SINE Alu 1 309 -2 1746 146 182 17 chr15 8738891 8739253 -76956501 + MSTB LTR MaLR 5 426 0 2464 60 0 0 chr15 8739652 8739969 -76955785 + AluY SINE Alu 1 317 0 1903 289 166 39 chr15 8740596 8741998 -76953756 + L2 LINE L2 285 1864 -1450 1808 225 3 11 chr15 8742054 8742414 -76953340 + MLT1A1 LTR MaLR 1 357 -8 2841 187 8 14 chr15 8742414 8742927 -76952827 + MLT1A1-int LTR MaLR 3 512 -1223 2203 109 10 3 chr15 8742949 8743252 -76952502 + AluSx SINE Alu 1 305 -7 1012 191 109 18 chr15 8743255 8743517 -76952237 - MLT-int LTR MaLR -155 1496 1222 973 235 19 103 chr15 8743640 8743959 -76951795 - MLT-int LTR MaLR -945 790 499 * 2523 176 17 38 chr15 8743951 8744485 -76951269 + L1MA2 LINE L1 3938 4460 -1686 5185 126 18 119 chr15 8744485 8746025 -76949729 - pTR5 LTR ERV1 0 2606 1524 1292 150 20 4 chr15 8746025 8746271 -76949483 + L1MA2 LINE L1 4457 4706 -1440 5245 146 20 12 chr15 8747694 8748869 -76946885 + L1MA2 LINE L1 4696 5891 -413 1780 153 60 38 chr15 8748869 8749234 -76946520 + THE1C LTR MaLR 1 373 -2 5245 146 20 12 chr15 8749234 8749420 -76946334 + L1MA2 LINE L1 5891 6074 -230 22 0 0 0 chr15 8749501 8749523 -76946231 + AT_rich Low_complexity Low_complexity 1 22 0 702 310 150 13 chr15 8749595 8750056 -76945698 + L2 LINE L2 2203 2726 -588 422 183 17 52 chr15 8750126 8750241 -76945513 + MER3 DNA MER1_type 97 207 -2 788 203 0 0 chr15 8750387 8750525 -76945229 + MLT1A1 LTR MaLR 228 365 0 230 214 0 0 chr15 8750527 8750569 -76945185 - L1MEc LINE L1 -6314 82 41 1217 170 44 22 chr15 8750869 8751098 -76944656 - MLT1A1 LTR MaLR -129 236 3 2682 281 81 37 chr15 8751099 8751174 -76944580 + L1MEc LINE L1 79 149 -6247 1439 199 42 72 chr15 8751174 8751576 -76944178 - MLT1B LTR MaLR 0 390 1 2682 281 81 37 chr15 8751576 8751875 -76943879 + L1MEc LINE L1 149 434 -5962 2459 206 63 34 chr15 8751875 8752459 -76943295 - MER77 LTR ERV1 -4 601 1 2682 281 81 37 chr15 8752459 8752740 -76943014 + L1MEc LINE L1 434 701 -5695 4809 164 44 1 chr15 8752740 8754099 -76941655 + L1PA16 LINE L1 4766 6158 -8 2682 281 81 37 chr15 8754099 8754113 -76941641 + L1MEc LINE L1 701 713 -5683 1423 199 95 9 chr15 8754113 8754449 -76941305 + MLT1A1 LTR MaLR 1 365 0 2682 281 81 37 chr15 8754449 8754864 -76940890 + L1MEc LINE L1 713 1239 -5157 2411 90 0 3 chr15 8754864 8755176 -76940578 + AluY SINE Alu 1 311 0 2682 281 81 37 chr15 8755176 8755452 -76940302 + L1MEc LINE L1 1239 1502 -4894 257 132 0 0 chr15 8755551 8755589 -76940165 + Alu SINE Alu 5 42 -260 1427 233 25 6 chr15 8755751 8756077 -76939677 - HERVL74 LTR ERVL -3894 1791 1460 1371 192 92 3 chr15 8756119 8756411 -76939343 - HERVL74 LTR ERVL -4299 1386 1069 201 74 0 0 chr15 8756478 8756505 -76939249 + (T)n Simple_repeat Simple_repeat 1 27 0 44447 46 5 1 chr15 8756539 8762670 -76933084 + L1PA4 LINE L1 2 6155 0 1439 247 126 14 chr15 8762688 8763198 -76932556 - L1MEc LINE L1 -5646 750 184 1534 88 92 11 chr15 8763217 8763478 -76932276 - L1MA3 LINE L1 0 6305 6024 227 250 0 0 chr15 8763489 8763545 -76932209 - L1MEc LINE L1 -6206 190 135 362 16 81 0 chr15 8763551 8763613 -76932141 + (CATTT)n Simple_repeat Simple_repeat 1 67 0 405 127 0 0 chr15 8763613 8763668 -76932086 - AluJ/FRAM SINE Alu -22 280 226 506 24 73 0 chr15 8763668 8763750 -76932004 + (CATTT)n Simple_repeat Simple_repeat 1 88 0 377 146 0 0 chr15 8763752 8763807 -76931947 - AluJ/FRAM SINE Alu -22 280 226 518 15 30 0 chr15 8763807 8763873 -76931881 + (CATTT)n Simple_repeat Simple_repeat 1 68 0 405 127 0 0 chr15 8763875 8763930 -76931824 - AluJ/FRAM SINE Alu -22 280 226 316 21 62 0 chr15 8763930 8763978 -76931776 + (CATTT)n Simple_repeat Simple_repeat 1 51 0 369 164 0 0 chr15 8763982 8764037 -76931717 - AluJ/FRAM SINE Alu -22 280 226 269 26 26 0 chr15 8764044 8764082 -76931672 + (CATTT)n Simple_repeat Simple_repeat 5 43 0 362 151 0 0 chr15 8764098 8764151 -76931603 - AluJ/FRAM SINE Alu -24 278 226 306 19 94 0 chr15 8764151 8764204 -76931550 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 392 143 0 0 chr15 8764206 8764262 -76931492 - AluJ/FRAM SINE Alu -22 280 225 379 26 117 0 chr15 8764262 8764339 -76931415 + (CATTT)n Simple_repeat Simple_repeat 2 87 0 365 191 0 0 chr15 8764339 8764402 -76931352 - AluJ/FRAM SINE Alu -14 288 226 331 0 82 0 chr15 8764402 8764451 -76931303 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 392 143 0 0 chr15 8764453 8764509 -76931245 - AluJ/FRAM SINE Alu -22 280 225 357 18 70 0 chr15 8764515 8764572 -76931182 + (CATTT)n Simple_repeat Simple_repeat 5 65 0 355 233 0 0 chr15 8764576 8764649 -76931105 - AluJ/FRAM SINE Alu -4 298 226 202 0 91 0 chr15 8764649 8764682 -76931072 + (CATTT)n Simple_repeat Simple_repeat 1 36 0 369 164 0 0 chr15 8764686 8764741 -76931013 - AluJ/FRAM SINE Alu -22 280 226 327 0 94 0 chr15 8764741 8764794 -76930960 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764810 8764863 -76930891 - AluJ/FRAM SINE Alu -24 278 257 306 19 94 0 chr15 8764863 8764916 -76930838 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764916 8764948 -76930806 - AluJ/FRAM SINE Alu -45 257 226 343 93 0 0 chr15 8764926 8764969 -76930785 - Alu SINE Alu -34 267 225 * 215 0 67 0 chr15 8764970 8765000 -76930754 + (CATTT)n Simple_repeat Simple_repeat 2 33 0 405 127 0 0 chr15 8765002 8765057 -76930697 - AluJ/FRAM SINE Alu -22 280 226 494 12 96 0 chr15 8765058 8765141 -76930613 + (CATTT)n Simple_repeat Simple_repeat 2 92 0 406 140 0 0 chr15 8765142 8765199 -76930555 - AluJ/FRAM SINE Alu -31 281 225 413 208 0 0 chr15 8765232 8765309 -76930445 - AluJ/FRAM SINE Alu 0 302 226 381 32 65 0 chr15 8765309 8765371 -76930383 + (CATTT)n Simple_repeat Simple_repeat 1 66 0 369 164 0 0 chr15 8765375 8765430 -76930324 - AluJ/FRAM SINE Alu -22 280 226 325 20 61 0 chr15 8765431 8765480 -76930274 + (CATTT)n Simple_repeat Simple_repeat 2 53 0 355 130 0 19 chr15 8765496 8765550 -76930204 - AluJ/FRAM SINE Alu -24 278 226 232 25 75 0 chr15 8765550 8765590 -76930164 + (CATTT)n Simple_repeat Simple_repeat 1 43 0 355 164 0 0 chr15 8765592 8765647 -76930107 - AluJ/FRAM SINE Alu -22 280 226 282 0 104 0 chr15 8765647 8765695 -76930059 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 401 125 0 0 chr15 8765697 8765753 -76930001 - AluJ/FRAM SINE Alu -22 280 225 246 43 85 0 chr15 8765759 8765806 -76929948 + (CATTT)n Simple_repeat Simple_repeat 5 55 0 369 206 27 0 chr15 8765810 8765883 -76929871 - AluJ/FRAM SINE Alu -2 300 226 273 0 106 0 chr15 8765883 8765930 -76929824 + (CATTT)n Simple_repeat Simple_repeat 1 52 0 360 167 0 0 chr15 8765930 8765984 -76929770 - AluJ/FRAM SINE Alu -23 279 226 196 0 118 0 chr15 8765984 8766018 -76929736 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 385 132 0 0 chr15 8766034 8766087 -76929667 - AluJ/FRAM SINE Alu -24 278 226 474 14 57 0 chr15 8766087 8766157 -76929597 + (CATTT)n Simple_repeat Simple_repeat 1 74 0 394 127 0 0 chr15 8766166 8766221 -76929533 - AluJ/FRAM SINE Alu -22 280 226 232 0 105 0 chr15 8766222 8766260 -76929494 + (CATTT)n Simple_repeat Simple_repeat 2 43 0 405 127 0 0 chr15 8766262 8766317 -76929437 - AluJ/FRAM SINE Alu -22 280 226 418 16 66 0 chr15 8766317 8766378 -76929376 + (CATTT)n Simple_repeat Simple_repeat 1 65 0 1442 160 125 12 chr15 8766378 8766634 -76929120 - AluJo SINE Alu -17 285 1 892 205 144 5 chr15 8768267 8768462 -76927292 + MER58A DNA MER1_type 1 222 -2 11292 121 29 16 chr15 8768979 8770430 -76925324 + Tigger1 DNA MER2_type 1 1480 -938 1551 70 10 5 chr15 8770430 8770630 -76925124 + AluY SINE Alu 110 310 -1 11292 121 29 16 chr15 8770630 8770918 -76924836 + Tigger1 DNA MER2_type 1480 1763 -655 668 174 68 0 chr15 8770911 8771043 -76924711 + Tigger1 DNA MER2_type 2277 2417 -1 * 799 220 154 76 chr15 8771049 8771458 -76924296 + MLT1F1 LTR MaLR 69 509 -58 2385 81 0 44 chr15 8771645 8771965 -76923789 + AluSg SINE Alu 1 306 -4 2188 107 30 0 chr15 8772396 8772695 -76923059 - AluSx SINE Alu -4 308 1 2377 79 0 26 chr15 8772823 8773126 -76922628 + AluSq SINE Alu 1 295 -18 2049 62 0 0 chr15 8774004 8774245 -76921509 - AluSg SINE Alu -69 241 1 2224 102 3 0 chr15 8775582 8775875 -76919879 - AluY SINE Alu -17 294 1 295 204 0 0 chr15 8777688 8777742 -76918012 + MER58 DNA MER1_type 171 224 -117 207 305 0 0 chr15 8779053 8779112 -76916642 + GA-rich Low_complexity Low_complexity 1 59 0 510 291 32 77 chr15 8779136 8779449 -76916305 - L2 LINE L2 -585 2729 2431 1453 184 42 4 chr15 8779523 8779784 -76915970 + AluJb SINE Alu 1 271 -41 1764 154 3 10 chr15 8779906 8780199 -76915555 + AluJo SINE Alu 1 291 -21 24 32 0 0 chr15 8781805 8781836 -76913918 + AT_rich Low_complexity Low_complexity 1 31 0 1139 136 0 0 chr15 8782069 8782223 -76913531 + FRAM SINE Alu 1 150 -26 949 217 57 62 chr15 8782394 8782782 -76912972 + L1MC5 LINE L1 6876 7237 -724 2312 99 3 3 chr15 8783833 8784136 -76911618 + AluSp SINE Alu 1 303 -10 2133 131 0 3 chr15 8784147 8784445 -76911309 + AluSx SINE Alu 5 301 -11 22 0 0 0 chr15 8784807 8784829 -76910925 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 8785049 8785071 -76910683 + AT_rich Low_complexity Low_complexity 1 22 0 221 214 54 54 chr15 8785350 8785462 -76910292 + MIR SINE MIR 26 137 -125 253 262 16 0 chr15 8785822 8785883 -76909871 - MER46C DNA MER2_type -276 62 1 506 282 124 19 chr15 8786741 8787000 -76908754 - MER46C DNA MER2_type -51 287 2 2457 60 10 3 chr15 8787017 8787318 -76908436 - AluY SINE Alu -8 303 1 2483 199 117 23 chr15 8789208 8790453 -76905301 + L1MD2 LINE L1 4552 5910 -449 188 300 0 0 chr15 8790553 8790613 -76905141 - MIR SINE MIR -144 118 59 3174 220 62 52 chr15 8790706 8792291 -76903463 + L1ME1 LINE L1 4295 5895 -271 2044 147 0 3 chr15 8792291 8792604 -76903150 + AluJb SINE Alu 1 312 0 3174 220 62 52 chr15 8792604 8792874 -76902880 + L1ME1 LINE L1 5895 6161 -5 2370 65 41 0 chr15 8794059 8794353 -76901401 + AluY SINE Alu 1 306 -5 2356 69 0 4 chr15 8795092 8795374 -76900380 + AluY SINE Alu 1 281 -30 190 0 0 0 chr15 8795374 8795395 -76900359 + (TAAA)n Simple_repeat Simple_repeat 2 104 0 180 0 0 0 chr15 8796031 8796051 -76899703 + (GGGAA)n Simple_repeat Simple_repeat 5 24 0 2476 239 40 29 chr15 8796236 8796994 -76898760 - L1ME3A LINE L1 -2 6168 5403 303 303 86 12 chr15 8798949 8799111 -76896643 - L1ME3A LINE L1 -1871 4275 4102 2408 54 0 0 chr15 8799491 8799807 -76895947 + AluY SINE Alu 1 316 0 213 149 21 21 chr15 8800130 8800177 -76895577 - MER5A DNA MER1_type -22 167 121 340 246 146 15 chr15 8800491 8800621 -76895133 - MER103 DNA DNA -12 154 8 899 173 25 27 chr15 8801839 8802026 -76893728 + L1MC3 LINE L1 6196 6357 -2 235 236 307 21 chr15 8802666 8802806 -76892948 - L2 LINE L2 -20 3293 3114 1580 108 95 0 chr15 8803156 8803387 -76892367 - AluSx SINE Alu -11 301 49 7595 92 8 21 chr15 8803387 8804457 -76891297 + MER11C LTR ERVK 1 1057 -14 395 107 0 88 chr15 8804456 8804548 -76891206 - Alu SINE Alu -246 54 1 * 328 299 64 34 chr15 8804575 8804852 -76890902 - L1ME3 LINE L1 -206 5915 5650 305 236 133 33 chr15 8804922 8805154 -76890600 - L1ME3 LINE L1 -769 5395 5255 375 254 124 25 chr15 8805264 8805417 -76890337 + L1MC4a LINE L1 5722 5901 -1907 1457 181 3 60 chr15 8805417 8805731 -76890023 + AluJb SINE Alu 1 296 -16 375 254 124 25 chr15 8805731 8805778 -76889976 + L1MC4a LINE L1 5901 5942 -1866 858 129 5 118 chr15 8805779 8805965 -76889789 - AluSp SINE Alu -121 192 28 2452 164 38 19 chr15 8805966 8806442 -76889312 + LTR15 LTR ERV1 2 486 -7 264 108 0 0 chr15 8806473 8806510 -76889244 - AluSp SINE Alu -265 37 1 696 219 8 80 chr15 8806539 8806662 -76889092 + AluJb SINE Alu 2 101 -211 1696 176 3 3 chr15 8806662 8806974 -76888780 - AluSp SINE Alu -1 312 1 696 219 8 80 chr15 8806974 8807088 -76888666 + AluJb SINE Alu 101 222 -90 1551 168 6 47 chr15 8807113 8807434 -76888320 - AluSp SINE Alu -5 308 1 590 159 9 9 chr15 8807463 8807576 -76888178 + AluJb SINE Alu 2 114 -198 1578 168 6 50 chr15 8807578 8807899 -76887855 - AluSp SINE Alu -6 307 1 1288 144 9 107 chr15 8807927 8808044 -76887710 + AluJb SINE Alu 1 128 -184 1687 164 0 29 chr15 8808044 8808356 -76887398 - AluSp SINE Alu -10 303 1 1288 144 9 107 chr15 8808356 8808584 -76887170 + AluJb SINE Alu 128 312 0 394 178 40 103 chr15 8809242 8809416 -76886338 + L1MC5 LINE L1 7658 7820 -141 207 69 0 0 chr15 8809757 8809786 -76885968 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 943 169 0 18 chr15 8810910 8811076 -76884678 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 8811782 8811870 -76883884 - MIR SINE MIR -70 192 96 1921 132 0 45 chr15 8811921 8812231 -76883523 - AluSx SINE Alu -15 297 2 183 200 0 0 chr15 8812758 8812798 -76882956 - MIR SINE MIR -117 145 106 207 0 0 0 chr15 8813127 8813150 -76882604 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 235 78 0 chr15 8813285 8813336 -76882418 - MIR SINE MIR -59 149 95 431 233 103 27 chr15 8814358 8814504 -76881250 - MIR SINE MIR -70 192 36 228 307 79 18 chr15 8816121 8816235 -76879519 - L2 LINE L2 -5 3308 3188 246 338 119 0 chr15 8816242 8816393 -76879361 - MIR3 SINE MIR -9 199 31 310 287 73 7 chr15 8817322 8817458 -76878296 - MIR SINE MIR -70 192 48 2411 82 7 7 chr15 8817465 8817771 -76877983 - AluY SINE Alu -5 306 1 312 91 0 0 chr15 8820058 8820102 -76875652 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2315 107 0 0 chr15 8820449 8820749 -76875005 + AluSx SINE Alu 1 300 -12 532 236 114 7 chr15 8821083 8821113 -76874641 + MER5A DNA MER1_type 2 27 -162 252 0 0 0 chr15 8821113 8821141 -76874613 + (CAG)n Simple_repeat Simple_repeat 2 29 0 532 236 114 7 chr15 8821141 8821250 -76874504 + MER5A DNA MER1_type 27 156 -33 1491 204 4 4 chr15 8821992 8822267 -76873487 + AluJo SINE Alu 1 275 -37 609 173 17 34 chr15 8822380 8822559 -76873195 + GA-rich Low_complexity Low_complexity 2 177 0 461 231 117 41 chr15 8822568 8823034 -76872720 + L1ME LINE L1 5188 5701 -469 2303 84 0 7 chr15 8823212 8823508 -76872246 + AluY SINE Alu 1 294 -17 682 235 84 50 chr15 8824126 8824424 -76871330 - L1MC4a LINE L1 -1799 6009 5702 685 169 0 25 chr15 8824697 8824815 -76870939 + FRAM SINE Alu 56 170 -6 1796 176 0 3 chr15 8824815 8825099 -76870655 + AluJo SINE Alu 1 283 -29 324 0 0 0 chr15 8825099 8825135 -76870619 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 367 125 75 25 chr15 8825243 8825323 -76870431 + L1MB3 LINE L1 6083 6166 -17 746 167 0 53 chr15 8825343 8825493 -76870261 - FLAM_C SINE Alu 0 143 2 314 333 56 20 chr15 8825589 8825784 -76869970 + L1M4 LINE L1 2841 3042 -3104 310 278 183 33 chr15 8826113 8826354 -76869400 + L1M4 LINE L1 4557 4833 -1313 22 0 0 0 chr15 8826442 8826464 -76869290 + AT_rich Low_complexity Low_complexity 1 22 0 2268 99 3 0 chr15 8826893 8827187 -76868567 - AluSg SINE Alu -15 295 1 897 220 62 56 chr15 8827338 8827466 -76868288 - L1MEc LINE L1 -4409 1987 1861 1716 191 0 17 chr15 8827466 8827764 -76867990 + AluJb SINE Alu 1 293 -19 897 220 62 56 chr15 8827764 8827972 -76867782 - L1MEc LINE L1 -4535 1861 1649 2429 156 103 54 chr15 8827972 8828589 -76867165 + pTR5 LTR ERV1 1176 1768 -670 923 145 45 99 chr15 8828589 8828810 -76866944 - LTR15 LTR ERV1 -275 218 10 1161 154 48 92 chr15 8828810 8829082 -76866672 + AluSp SINE Alu 22 281 -32 203 79 26 0 chr15 8829083 8829121 -76866633 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1811 105 47 0 chr15 8829136 8829394 -76866360 + MSTB1 LTR MaLR 163 432 0 2281 107 7 3 chr15 8829425 8829725 -76866029 + AluSx SINE Alu 1 301 -11 360 0 0 0 chr15 8829861 8829901 -76865853 + (TTA)n Simple_repeat Simple_repeat 3 42 0 42368 53 6 19 chr15 8829901 8836111 -76859643 - L1PA4 LINE L1 -18 6137 11 260 284 59 0 chr15 8836126 8836228 -76859526 + L1ME3A LINE L1 6055 6162 -8 1126 222 162 55 chr15 8837098 8837585 -76858169 + MLT1F LTR MaLR 4 542 0 22 0 0 0 chr15 8837617 8837639 -76858115 + AT_rich Low_complexity Low_complexity 1 22 0 1961 245 26 83 chr15 8837639 8838406 -76857348 + L1ME2 LINE L1 5428 6150 -14 222 259 0 0 chr15 8838518 8838572 -76857182 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 269 250 62 0 chr15 8838572 8838668 -76857086 + L1MC4 LINE L1 7924 8025 -17 1863 170 0 0 chr15 8838804 8839093 -76856661 - AluJo SINE Alu -23 289 1 4576 167 36 19 chr15 8839227 8840112 -76855642 - MER54A LTR ERVL 0 901 2 323 284 43 9 chr15 8841120 8841236 -76854518 - MIR3 SINE MIR -33 175 56 235 198 99 12 chr15 8841847 8841928 -76853826 - L1MA10 LINE L1 -4 6330 6243 2536 159 28 35 chr15 8841928 8842386 -76853368 + Tigger1 DNA MER2_type 1 455 -1963 10224 102 46 23 chr15 8842395 8843863 -76851891 + Tigger1 DNA MER2_type 802 2310 -108 1628 163 7 52 chr15 8843863 8844169 -76851585 - AluJb SINE Alu -20 292 1 10224 102 46 23 chr15 8844169 8844277 -76851477 + Tigger1 DNA MER2_type 2310 2414 -4 2033 107 52 0 chr15 8844327 8844617 -76851137 + AluY SINE Alu 1 305 -6 3043 223 25 47 chr15 8844617 8845598 -76850156 - L1ME1 LINE L1 -141 6094 5153 2039 95 82 0 chr15 8845598 8845903 -76849851 + L1PB1 LINE L1 5822 6151 0 3043 223 25 47 chr15 8845903 8846186 -76849568 - L1ME1 LINE L1 -1082 5153 4865 636 184 97 72 chr15 8846212 8846419 -76849335 - L1MA9 LINE L1 -38 6274 6063 * 4422 243 62 21 chr15 8846416 8846480 -76849274 - L1ME1 LINE L1 -1366 4849 4789 1989 126 37 37 chr15 8846480 8846854 -76848900 + THE1C LTR MaLR 1 374 -1 4422 243 62 21 chr15 8846854 8848416 -76847338 - L1ME1 LINE L1 -1426 4789 3157 397 265 41 6 chr15 8848423 8848593 -76847161 - L1ME1 LINE L1 -2987 3228 3053 1270 219 20 68 chr15 8848635 8848705 -76847049 - L1ME1 LINE L1 -5142 1254 1182 757 208 0 8 chr15 8848705 8848835 -76846919 - FLAM_A SINE Alu -4 129 1 1270 219 20 68 chr15 8848835 8849348 -76846406 - L1ME1 LINE L1 -5214 1182 699 1066 235 81 86 chr15 8849352 8849963 -76845791 + LTR19C LTR ERV1 1 779 0 1812 265 60 19 chr15 8849987 8850023 -76845731 - L1ME1 LINE L1 -5715 681 648 1605 204 10 10 chr15 8850023 8850327 -76845427 - AluJo SINE Alu -8 304 1 1812 265 60 19 chr15 8850327 8850912 -76844842 - L1ME1 LINE L1 -5748 648 35 526 260 110 34 chr15 8850965 8851319 -76844435 - L1MC5 LINE L1 -83 7878 7498 346 195 61 12 chr15 8851323 8851405 -76844349 + MER58A DNA MER1_type 5 90 -17 198 167 0 0 chr15 8851954 8851990 -76843764 + CT-rich Low_complexity Low_complexity 1 36 0 2412 107 0 0 chr15 8851991 8852301 -76843453 - AluSg SINE Alu 0 310 1 616 251 84 15 chr15 8853025 8853228 -76842526 + L2 LINE L2 2949 3165 -148 216 319 34 34 chr15 8853278 8853397 -76842357 - L2 LINE L2 -10 3303 3185 3909 161 32 42 chr15 8853697 8854303 -76841451 + LTR39 LTR ERV1 1 599 -184 2191 128 3 0 chr15 8854303 8854609 -76841145 - AluSx SINE Alu -5 307 1 3909 161 32 42 chr15 8854609 8854793 -76840961 + LTR39 LTR ERV1 599 783 0 1044 257 83 48 chr15 8856107 8856686 -76839068 + L1ME1 LINE L1 823 1421 -4988 3609 241 66 22 chr15 8856801 8857117 -76838637 + L1ME1 LINE L1 4180 4481 -1945 234 0 0 0 chr15 8857117 8857143 -76838611 + (CA)n Simple_repeat Simple_repeat 2 27 0 3609 241 66 22 chr15 8857143 8858489 -76837265 + L1ME1 LINE L1 4481 5952 -474 2173 114 6 22 chr15 8858489 8858804 -76836950 + AluSg SINE Alu 1 310 0 3609 241 66 22 chr15 8858804 8859281 -76836473 + L1ME1 LINE L1 5952 6407 -19 365 357 65 18 chr15 8859412 8859639 -76836115 - MIR SINE MIR -14 248 4 370 136 0 30 chr15 8861126 8861192 -76834562 + MLT1A1 LTR MaLR 4 67 -298 930 189 0 0 chr15 8861196 8861365 -76834389 + MLT1A1 LTR MaLR 197 365 0 954 248 18 5 chr15 8861967 8862185 -76833569 + MER58A DNA MER1_type 2 222 -2 2347 87 0 19 chr15 8862975 8863284 -76832470 - AluY SINE Alu -8 303 1 573 261 172 0 chr15 8863671 8863874 -76831880 + MIR SINE MIR 21 258 -4 1929 117 0 53 chr15 8864365 8864712 -76831042 + AluSq SINE Alu 1 331 0 190 326 95 0 chr15 8864941 8865036 -76830718 + L2 LINE L2 3175 3278 -35 788 228 14 9 chr15 8865036 8865247 -76830507 + MER96B DNA MER1_type? 1 212 -205 275 317 145 21 chr15 8865499 8865644 -76830110 + MIR SINE MIR 22 184 -78 2774 234 76 43 chr15 8867096 8868404 -76827350 - L1MC5 LINE L1 -49 7912 6551 311 328 40 27 chr15 8868537 8868833 -76826921 - L1 LINE L1 -1818 4328 4029 204 40 0 0 chr15 8868856 8868881 -76826873 + (CA)n Simple_repeat Simple_repeat 2 26 0 2790 77 26 3 chr15 8868883 8869274 -76826480 - L1PA10 LINE L1 -1 6167 5768 12546 194 48 9 chr15 8869280 8874707 -76821047 - L1PB1 LINE L1 -1 6866 1093 3297 221 62 9 chr15 8874711 8875671 -76820083 - L1PB1 LINE L1 -5818 1045 36 3817 100 35 7 chr15 8875681 8876236 -76819518 - L1P4 LINE L1 -387 5781 5188 2611 45 0 13 chr15 8876236 8876545 -76819209 + AluY SINE Alu 1 305 -6 3817 100 35 7 chr15 8876545 8877027 -76818727 - L1P4 LINE L1 -980 5188 4721 424 298 36 42 chr15 8877099 8877267 -76818487 - L1M4 LINE L1 -2251 3895 3729 1745 136 4 0 chr15 8877292 8877565 -76818189 - L1PA15 LINE L1 0 6165 5892 260 330 36 21 chr15 8877595 8877928 -76817826 - L1M4 LINE L1 -2439 3707 3370 347 195 49 0 chr15 8878572 8878654 -76817100 - Tigger5 DNA MER2_type 0 2323 2238 344 164 14 14 chr15 8878704 8878777 -76816977 - Tigger5 DNA MER2_type 0 2323 2251 2139 113 7 0 chr15 8880322 8880613 -76815141 + AluSq SINE Alu 1 293 -20 653 256 27 70 chr15 8880717 8881348 -76814406 + L1MC4a LINE L1 6683 7214 -636 395 207 96 114 chr15 8881767 8882144 -76813610 + L1MC5 LINE L1 7560 7929 -32 314 289 82 15 chr15 8882703 8882838 -76812916 + L1MB4 LINE L1 3638 3781 -2365 297 289 74 13 chr15 8882908 8883057 -76812697 + MLT1J LTR MaLR 344 501 -10 245 219 16 0 chr15 8883064 8883128 -76812626 + L1MB4 LINE L1 3856 3920 -2226 324 168 168 32 chr15 8883530 8883685 -76812069 + L1MB4 LINE L1 4524 4699 -1447 438 172 0 33 chr15 8884472 8884594 -76811160 + GA-rich Low_complexity Low_complexity 1 118 0 2120 109 10 0 chr15 8884878 8885171 -76810583 + AluSx SINE Alu 1 296 -16 927 154 80 28 chr15 8885348 8885804 -76809950 + L1MB4 LINE L1 5190 5863 -317 3238 136 0 6 chr15 8885804 8886304 -76809450 + LOR1a LTR ERV1 1 497 0 1075 179 39 8 chr15 8886304 8886538 -76809216 + L1MB4 LINE L1 5922 6162 -18 255 276 27 70 chr15 8886689 8886874 -76808880 + L1ME LINE L1 5539 5715 -406 22 0 0 0 chr15 8887140 8887162 -76808592 + AT_rich Low_complexity Low_complexity 1 22 0 450 267 73 42 chr15 8888124 8888289 -76807465 - L2 LINE L2 0 3313 3144 712 156 32 219 chr15 8888756 8888902 -76806852 + L1MD3 LINE L1 7564 7609 -386 2154 126 0 0 chr15 8888902 8889203 -76806551 + AluSg SINE Alu 1 301 -9 712 156 32 219 chr15 8889203 8889403 -76806351 + L1MD3 LINE L1 7609 7845 -150 327 236 22 0 chr15 8889433 8889522 -76806232 - U8 snRNA snRNA -8 128 38 312 214 0 14 chr15 8890685 8890755 -76804999 - MER8 DNA MER2_type -170 69 1 312 247 137 71 chr15 8891195 8891420 -76804334 - MIR SINE MIR -28 234 3 829 143 0 15 chr15 8891738 8891871 -76803883 + FLAM_C SINE Alu 2 132 -1 23 33 0 0 chr15 8891938 8891968 -76803786 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr15 8892088 8892112 -76803642 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr15 8892172 8892217 -76803537 + AT_rich Low_complexity Low_complexity 1 45 0 2123 97 4 0 chr15 8892846 8893146 -76802608 - AluSq SINE Alu 0 303 3 833 68 25 17 chr15 8893160 8893278 -76802476 - AluY SINE Alu -15 296 178 2146 133 3 0 chr15 8894210 8894511 -76801243 + AluSx SINE Alu 1 302 -10 2198 120 0 13 chr15 8894586 8894887 -76800867 + AluSq SINE Alu 1 297 -16 25 0 0 0 chr15 8895086 8895111 -76800643 + AT_rich Low_complexity Low_complexity 1 25 0 258 280 0 13 chr15 8895702 8895777 -76799977 + L3 LINE CR1 916 989 -588 378 0 0 0 chr15 8896212 8896254 -76799500 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 88 0 0 chr15 8897329 8897386 -76798368 + AT_rich Low_complexity Low_complexity 1 57 0 1917 164 0 3 chr15 8898105 8898409 -76797345 + AluSx SINE Alu 1 303 -9 196 305 171 12 chr15 8898588 8898752 -76797002 + L2 LINE L2 2598 2787 -527 729 231 0 8 chr15 8900629 8900763 -76794991 - FLAM_A SINE Alu 0 133 1 887 265 106 19 chr15 8901392 8901807 -76793947 + L2 LINE L2 1742 2192 -1122 1829 133 24 7 chr15 8902203 8902497 -76793257 - AluJb SINE Alu -7 305 7 666 189 8 16 chr15 8902597 8902719 -76793035 - FLAM_C SINE Alu -12 121 1 2138 129 0 13 chr15 8902775 8903085 -76792669 + AluSx SINE Alu 1 306 -6 237 333 0 24 chr15 8903309 8903393 -76792361 + L3b LINE CR1 1272 1353 -230 200 317 24 81 chr15 8903474 8903597 -76792157 - L2 LINE L2 -2 3270 3155 2014 141 3 0 chr15 8903598 8903889 -76791865 + AluSx SINE Alu 1 292 -20 284 104 0 21 chr15 8904431 8904479 -76791275 - MADE1 DNA Mariner 0 80 34 493 286 104 10 chr15 8905136 8905328 -76790426 - L2 LINE L2 0 3313 3104 460 171 13 0 chr15 8905379 8905455 -76790299 - MER33 DNA MER1_type -246 78 2 2200 99 0 3 chr15 8907665 8907979 -76787775 + AluY SINE Alu 1 313 0 1196 174 15 0 chr15 8908234 8908429 -76787325 - AluJo SINE Alu -111 201 4 231 303 91 24 chr15 8910836 8911001 -76784753 - MIR SINE MIR -11 251 76 22 0 0 0 chr15 8911350 8911372 -76784382 + AT_rich Low_complexity Low_complexity 1 22 0 673 216 40 0 chr15 8911633 8911781 -76783973 + MER5A DNA MER1_type 1 154 -35 2621 53 0 0 chr15 8912291 8912594 -76783160 - AluY SINE Alu -8 303 1 222 258 0 0 chr15 8913737 8913799 -76781955 + CT-rich Low_complexity Low_complexity 1 62 0 2553 211 42 24 chr15 8913977 8914604 -76781150 + L1MC4a LINE L1 7159 7796 -12 * 7022 215 69 12 chr15 8914594 8916250 -76779504 + L1MD1 LINE L1 3196 5049 -1193 216 0 0 0 chr15 8916250 8916274 -76779480 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 7022 215 69 12 chr15 8916274 8917184 -76778570 + L1MD1 LINE L1 5049 5906 -336 5401 172 7 0 chr15 8917285 8918239 -76777515 - L1P LINE L1 -850 5296 4336 434 263 249 37 chr15 8918644 8918941 -76776813 - L2 LINE L2 -1 3271 2912 213 263 40 0 chr15 8919091 8919167 -76776587 - MIR SINE MIR -26 236 158 1418 180 11 27 chr15 8919345 8919606 -76776148 - AluSx SINE Alu -53 259 3 1678 263 93 21 chr15 8919675 8920436 -76775318 - L1MEc LINE L1 -3116 3099 2284 1120 117 47 12 chr15 8920439 8920610 -76775144 - AluSg/x SINE Alu -7 303 127 1851 115 29 48 chr15 8920615 8920790 -76774964 - AluSx SINE Alu -1 311 143 2161 99 6 10 chr15 8920790 8921102 -76774652 - AluY SINE Alu 0 311 1 1851 115 29 48 chr15 8921102 8921238 -76774516 - AluSx SINE Alu -169 143 6 1376 259 67 117 chr15 8921242 8921455 -76774299 - L1MEc LINE L1 -4070 2326 2104 624 98 87 0 chr15 8921455 8921547 -76774207 - HY3 scRNA scRNA -1 100 1 1376 259 67 117 chr15 8921547 8921746 -76774008 - L1MEc LINE L1 -4292 2104 1897 1841 148 16 16 chr15 8921746 8922051 -76773703 + AluSx SINE Alu 5 309 -3 1376 259 67 117 chr15 8922051 8922968 -76772786 - L1MEc LINE L1 -4499 1897 1062 * 2338 212 95 95 chr15 8922966 8923287 -76772467 - L1MD2 LINE L1 -8 6234 5915 2210 128 77 8 chr15 8923287 8923638 -76772116 + THE1C LTR MaLR 1 375 0 2338 212 95 95 chr15 8923638 8924515 -76771239 - L1MD2 LINE L1 -327 5915 5049 311 275 225 14 chr15 8925151 8925289 -76770465 - L1MEc LINE L1 -5901 304 138 373 293 123 98 chr15 8925301 8925447 -76770307 - L1MEd LINE L1 -5556 563 422 2083 137 0 3 chr15 8925447 8925753 -76770001 + AluSg1 SINE Alu 1 305 -4 373 293 123 98 chr15 8925753 8926094 -76769660 - L1MEd LINE L1 -5697 422 64 2155 138 0 0 chr15 8926094 8926399 -76769355 - AluSx SINE Alu -3 309 5 1691 164 34 17 chr15 8927102 8927395 -76768359 + L1PB3 LINE L1 5855 6152 -2 482 198 22 11 chr15 8927570 8927661 -76768093 + AluJo SINE Alu 2 93 -219 182 148 0 0 chr15 8927663 8927690 -76768064 + MIR SINE MIR 222 248 -14 966 184 58 34 chr15 8927722 8927929 -76767825 + AluJo SINE Alu 82 293 -19 265 264 61 56 chr15 8928111 8928685 -76767069 + L1MC4 LINE L1 3718 7630 -412 535 283 126 12 chr15 8928723 8928970 -76766784 + L1ME3A LINE L1 5484 5758 -404 413 213 71 8 chr15 8928972 8929100 -76766654 + L1ME3A LINE L1 5791 5929 -241 597 298 105 39 chr15 8929288 8929651 -76766103 + MLT1J2 LTR MaLR 62 448 -2 2340 117 24 35 chr15 8929692 8930067 -76765687 + THE1C LTR MaLR 3 373 -2 11691 99 14 32 chr15 8930069 8931679 -76764075 + THE1C-int LTR MaLR 1 1580 0 2141 101 44 83 chr15 8931682 8932069 -76763685 + THE1C LTR MaLR 4 375 0 297 265 59 82 chr15 8932246 8932465 -76763289 + L1MC/D LINE L1 5332 5545 -2263 241 248 165 15 chr15 8932619 8932752 -76763002 + L1MC/D LINE L1 5668 5820 -1988 313 290 21 14 chr15 8933312 8933457 -76762297 + (TCTA)n Simple_repeat Simple_repeat 2 147 0 462 136 0 0 chr15 8933595 8933676 -76762078 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 430 243 5 60 chr15 8933685 8933870 -76761884 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1670 244 93 14 chr15 8934547 8935052 -76760702 + L1M4 LINE L1 4463 5007 -1139 211 245 6 37 chr15 8935080 8935243 -76760511 + (TG)n Simple_repeat Simple_repeat 1 158 0 250 254 209 15 chr15 8935831 8935965 -76759789 + MIR SINE MIR 89 248 -14 268 146 0 0 chr15 8935972 8936020 -76759734 + L1MA3 LINE L1 6258 6305 0 1626 228 97 43 chr15 8936723 8937261 -76758493 - MLT1F1 LTR MaLR 0 567 1 419 216 69 99 chr15 8937575 8937717 -76758037 + LTR37B LTR ERV1 185 319 -149 2267 59 3 53 chr15 8937717 8938020 -76757734 + AluY SINE Alu 1 288 -23 419 216 69 99 chr15 8938020 8938109 -76757645 + LTR37B LTR ERV1 319 409 -59 225 310 16 93 chr15 8939924 8940053 -76755701 - MIR SINE MIR -130 132 14 809 286 102 52 chr15 8940173 8940297 -76755457 + L1MC4 LINE L1 7129 7245 -797 2371 84 0 7 chr15 8940297 8940596 -76755158 + AluSc SINE Alu 1 297 -12 809 286 102 52 chr15 8940596 8941248 -76754506 + L1MC4 LINE L1 7245 8042 0 47 44 0 0 chr15 8941924 8941992 -76753762 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 8942383 8942425 -76753329 + AT_rich Low_complexity Low_complexity 1 42 0 2652 204 25 57 chr15 8942753 8943459 -76752295 + L1MC4a LINE L1 4617 5300 -846 * 5141 144 36 4 chr15 8943451 8945021 -76750733 + L1MA4 LINE L1 4487 6110 -190 693 143 34 0 chr15 8945625 8945744 -76750010 + L1MD1 LINE L1 6118 6240 -2 297 250 26 0 chr15 8946409 8946485 -76749269 + MER5A DNA MER1_type 29 106 -83 219 226 19 0 chr15 8946544 8946597 -76749157 + MIR SINE MIR 133 186 -76 636 227 129 12 chr15 8947281 8947444 -76748310 + MER58A DNA MER1_type 42 223 -1 301 373 35 35 chr15 8947453 8947654 -76748100 - L3 LINE CR1 -920 657 457 457 302 38 19 chr15 8947662 8947821 -76747933 - MIR3 SINE MIR -15 193 32 381 285 106 31 chr15 8949647 8949903 -76745851 + L1MC4a LINE L1 5452 5726 -2082 231 146 0 0 chr15 8951251 8951292 -76744462 + LTR66 LTR ERVL 399 439 -171 301 245 39 65 chr15 8951322 8951477 -76744277 + L1MC4a LINE L1 5847 5997 -1811 313 277 76 0 chr15 8951580 8951699 -76744055 + L1ME4a LINE L1 5991 6118 -3 629 293 22 0 chr15 8952059 8952240 -76743514 - L1 LINE L1 -3452 2694 2510 1252 272 92 52 chr15 8953647 8953920 -76741834 + L1ME3 LINE L1 4855 5116 -1050 1943 166 0 0 chr15 8953920 8954222 -76741532 + AluSx SINE Alu 2 303 -9 1252 272 92 52 chr15 8954222 8955179 -76740575 + L1ME3 LINE L1 5116 6166 0 249 274 106 58 chr15 8955378 8955432 -76740322 + L2 LINE L2 2657 2707 -565 2104 110 17 0 chr15 8955432 8955731 -76740023 + AluSx SINE Alu 1 304 -8 249 274 106 58 chr15 8955731 8956078 -76739676 + L2 LINE L2 2707 3077 -195 29 47 0 0 chr15 8956605 8956648 -76739106 + AT_rich Low_complexity Low_complexity 1 43 0 35 24 0 0 chr15 8956705 8956747 -76739007 + AT_rich Low_complexity Low_complexity 1 42 0 186 143 79 16 chr15 8956754 8956880 -76738874 + (TA)n Simple_repeat Simple_repeat 1 134 0 1948 232 64 76 chr15 8957517 8957824 -76737930 - L1MC4 LINE L1 -1 7807 7498 6267 45 0 0 chr15 8957824 8958527 -76737227 - L1PA7 LINE L1 -11 6143 5441 1948 232 64 76 chr15 8958527 8959127 -76736627 - L1MC4 LINE L1 -310 7498 6895 851 184 48 0 chr15 8959666 8959813 -76735941 - FRAM SINE Alu -14 162 9 1221 276 75 51 chr15 8959887 8960500 -76735254 + L2 LINE L2 2310 2937 -377 3550 122 48 59 chr15 8960845 8960982 -76734772 + MER7C DNA MER2_type 1 138 -2890 2259 55 21 0 chr15 8960982 8961271 -76734483 - AluY SINE Alu -14 297 3 3550 122 48 59 chr15 8961271 8961742 -76734012 + MER7C DNA MER2_type 138 602 0 274 318 93 0 chr15 8962430 8962537 -76733217 + L2 LINE L2 3145 3261 -11 666 274 74 55 chr15 8964144 8964725 -76731029 - L1MC4 LINE L1 -517 5647 5268 993 275 90 14 chr15 8966147 8966514 -76729240 + MLT1I LTR MaLR 1 395 -14 268 256 58 0 chr15 8966527 8966613 -76729141 + L2 LINE L2 2188 2278 -1036 476 316 54 0 chr15 8966619 8966787 -76728967 + L2 LINE L2 2082 2258 -1056 375 23 0 0 chr15 8966944 8966988 -76728766 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 111 0 0 chr15 8967081 8967108 -76728646 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 884 153 15 0 chr15 8968269 8968400 -76727354 - AluSg/x SINE Alu -46 266 134 1093 103 0 0 chr15 8968400 8968545 -76727209 - AluSc SINE Alu -4 305 161 901 83 0 0 chr15 8968547 8968655 -76727099 - AluSq/x SINE Alu -203 109 2 672 136 0 75 chr15 8969171 8969318 -76726436 + AluSg SINE Alu 2 137 -173 2211 95 0 0 chr15 8969424 8969708 -76726046 + AluY SINE Alu 18 301 -10 1666 155 17 24 chr15 8969845 8970135 -76725619 - AluJb SINE Alu -17 295 8 428 114 143 0 chr15 8970282 8970352 -76725402 - AluJ/FRAM SINE Alu -17 295 216 278 231 0 15 chr15 8970617 8970682 -76725072 - AluSg/x SINE Alu -53 249 186 1262 195 43 14 chr15 8970787 8971325 -76724429 + LTR1B LTR ERV1 233 826 0 180 111 0 0 chr15 8971366 8971393 -76724361 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 261 108 0 0 chr15 8971398 8971435 -76724319 + MLT2D LTR ERVL 378 414 0 873 229 10 5 chr15 8971435 8971640 -76724114 + HERVL-D LTR ERVL 1 206 -5448 1531 187 63 3 chr15 8971710 8971994 -76723760 + HERVL-D LTR ERVL 380 680 -5084 1463 127 17 68 chr15 8971996 8972288 -76723466 - LTR23 LTR ERV1 0 437 161 589 200 82 0 chr15 8972366 8972501 -76723253 - LTR23 LTR ERV1 -291 146 1 1194 167 14 5 chr15 8972526 8972747 -76723007 + HERVL-D LTR ERVL 679 901 -4863 1973 254 43 42 chr15 8972885 8973096 -76722658 - L1M4 LINE L1 -2465 3681 3472 2413 79 0 3 chr15 8973096 8973400 -76722354 + AluY SINE Alu 1 303 -8 1973 254 43 42 chr15 8973400 8973994 -76721760 - L1M4 LINE L1 -2674 3472 2875 1813 253 33 33 chr15 8973984 8974590 -76721164 - L1MCb LINE L1 -4882 1163 558 * 448 274 111 66 chr15 8974673 8974899 -76720855 - L1MCb LINE L1 -5481 564 329 243 255 43 78 chr15 8974913 8975054 -76720700 - L1MCb LINE L1 -5789 256 121 1123 283 52 71 chr15 8975060 8975777 -76719977 - MER21B LTR ERV1 -137 726 24 1546 127 5 0 chr15 8976090 8976303 -76719451 + AluSg/x SINE Alu 68 281 -29 4018 74 6 4 chr15 8976304 8976793 -76718961 + LTR2B LTR ERV1 1 490 0 432 37 0 0 chr15 8976794 8976848 -76718906 + (CATAA)n Simple_repeat Simple_repeat 1 54 0 1777 216 35 0 chr15 8976849 8977191 -76718563 - ERVL LTR ERVL -4360 1404 1051 629 122 218 27 chr15 8977192 8977339 -76718415 - MER4C LTR ERV1 0 465 291 275 29 0 229 chr15 8977390 8977460 -76718294 - MER4A LTR ERV1 -305 359 306 1563 153 63 39 chr15 8977468 8977802 -76717952 - MER4A LTR ERV1 -322 342 1 548 181 211 0 chr15 8977802 8977935 -76717819 - ERVL LTR ERVL -4711 1053 893 961 55 55 0 chr15 8977938 8978066 -76717688 + MER30 DNA MER1_type 4 138 -92 2263 81 7 0 chr15 8978066 8978350 -76717404 - AluY SINE Alu -17 294 9 2562 68 0 0 chr15 8978842 8979152 -76716602 - AluY SINE Alu -1 310 1 282 238 62 0 chr15 8979301 8979381 -76716373 + L1ME3 LINE L1 5550 5634 -536 654 256 84 9 chr15 8979384 8979599 -76716155 + L1ME3 LINE L1 5733 5963 -199 234 221 122 28 chr15 8980761 8980893 -76714861 + MIR SINE MIR 53 203 -59 1776 151 4 0 chr15 8980948 8981226 -76714528 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr15 8981231 8981254 -76714500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 347 228 43 0 chr15 8981677 8981769 -76713985 + L1M4 LINE L1 3863 3958 -2188 631 196 43 0 chr15 8981776 8981914 -76713840 + L1MC1 LINE L1 6128 6271 -62 551 149 33 66 chr15 8981914 8982021 -76713733 + L1MC1 LINE L1 6206 6322 -11 2046 124 0 7 chr15 8982027 8982340 -76713414 + AluSc SINE Alu 1 311 0 2312 78 0 13 chr15 8982366 8982673 -76713081 + AluY SINE Alu 1 303 -8 2436 55 0 19 chr15 8983606 8983916 -76711838 + AluY SINE Alu 1 304 -7 2387 67 3 3 chr15 8984554 8984851 -76710903 - AluY SINE Alu -14 297 1 674 99 10 0 chr15 8985472 8985573 -76710181 - LTR1B LTR ERV1 -724 102 1 1836 213 28 14 chr15 8985628 8985985 -76709769 - MLT2B2 LTR ERVL -54 461 100 271 194 237 0 chr15 8986052 8986145 -76709609 - MLT2B2 LTR ERVL -400 115 1 3662 228 129 29 chr15 8986203 8987816 -76707938 - L1MDb LINE L1 -4666 1740 6 2285 65 45 3 chr15 8987978 8988269 -76707485 + AluY SINE Alu 1 303 -8 22 0 0 0 chr15 8988328 8988350 -76707404 + AT_rich Low_complexity Low_complexity 1 22 0 717 269 62 88 chr15 8988355 8988897 -76706857 + HAL1 LINE L1 1059 1584 -923 2834 121 45 17 chr15 8988897 8989319 -76706435 + MER57B LTR ERV1 1 434 0 717 269 62 88 chr15 8989319 8989401 -76706353 + HAL1 LINE L1 1584 1667 -840 232 284 31 0 chr15 8989427 8989502 -76706252 - MER20B DNA MER1_type -5 214 135 2020 178 109 5 chr15 8989734 8990155 -76705599 - MLT1C LTR MaLR 0 467 3 888 97 24 16 chr15 8990591 8990715 -76705039 + AluY SINE Alu 1 125 -186 2409 73 0 3 chr15 8991086 8991387 -76704367 + AluY SINE Alu 1 300 -11 1452 137 5 0 chr15 8992173 8992378 -76703376 - L1MC1 LINE L1 -6 6327 6122 190 120 20 60 chr15 8992425 8992475 -76703279 + MIR SINE MIR 107 154 -108 972 158 0 19 chr15 8992484 8992665 -76703089 + FRAM SINE Alu 1 176 0 474 91 0 15 chr15 8994298 8994364 -76701390 - Alu SINE Alu -243 66 2 452 194 21 0 chr15 8994963 8995056 -76700698 - MER103 DNA DNA -21 145 51 301 275 18 37 chr15 8995102 8995211 -76700543 + MER5C DNA MER1_type 18 124 -200 1519 135 191 44 chr15 8995673 8995917 -76699837 + MER47A DNA MER2_type 1 208 -2115 234 0 0 0 chr15 8995917 8995943 -76699811 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 2090 115 3 7 chr15 8995944 8996232 -76699522 - AluSp SINE Alu -26 287 1 1519 135 191 44 chr15 8996232 8996304 -76699450 + MER47A DNA MER2_type 207 366 0 2258 69 38 0 chr15 8997104 8997392 -76698362 - AluY SINE Alu -8 303 5 297 128 0 0 chr15 8997396 8997443 -76698311 + (T)n Simple_repeat Simple_repeat 1 47 0 21 89 0 0 chr15 8997969 8998025 -76697729 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 8998302 8998330 -76697424 + AT_rich Low_complexity Low_complexity 1 28 0 2254 86 0 0 chr15 8998732 8999052 -76696702 - AluSg SINE Alu 0 321 2 185 81 0 54 chr15 9000323 9000360 -76695394 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 867 243 96 35 chr15 9000621 9001016 -76694738 + LTR37A LTR ERV1 8 426 0 2072 100 0 31 chr15 9002046 9002336 -76693418 - AluY SINE Alu -13 298 18 218 211 158 0 chr15 9002931 9003007 -76692747 + MIR SINE MIR 113 200 -62 207 247 185 0 chr15 9003293 9003374 -76692380 + L2 LINE L2 3139 3234 -38 288 303 91 23 chr15 9004238 9004411 -76691343 - MIR SINE MIR -62 146 5 1575 90 172 4 chr15 9004486 9004742 -76691012 + AluJo SINE Alu 1 299 -3 2146 186 28 2 chr15 9005623 9006059 -76689695 - L1 LINE L1 -2369 3777 3331 2210 81 7 7 chr15 9006062 9006360 -76689394 - AluY SINE Alu -9 302 5 495 33 0 0 chr15 9006371 9006432 -76689322 + (CA)n Simple_repeat Simple_repeat 2 62 0 22 56 0 0 chr15 9006529 9006565 -76689189 + GC_rich Low_complexity Low_complexity 1 36 0 1962 97 10 34 chr15 9007441 9007739 -76688015 + AluSq SINE Alu 1 291 -22 2058 86 0 95 chr15 9007740 9008077 -76687677 - AluSg SINE Alu -5 305 1 2355 68 0 10 chr15 9008260 9008586 -76687168 - AluY SINE Alu 0 311 1 1350 122 5 0 chr15 9008586 9008775 -76686979 + Charlie3 DNA MER1_type 2513 2702 -8 1304 146 5 0 chr15 9008777 9008997 -76686757 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 9009072 9009357 -76686397 - AluSx SINE Alu -28 284 1 3640 203 44 20 chr15 9009357 9010317 -76685437 - L1MB3 LINE L1 -724 5460 4475 1642 167 7 24 chr15 9010899 9011193 -76684561 + AluJo SINE Alu 1 289 -23 243 233 29 24 chr15 9011245 9011329 -76684425 + MIR SINE MIR 69 153 -55 6426 13 1 0 chr15 9013011 9013724 -76682030 - L1PA3 LINE L1 0 6155 5442 429 70 0 0 chr15 9014057 9014114 -76681640 + (CA)n Simple_repeat Simple_repeat 1 57 0 598 246 40 6 chr15 9015389 9015564 -76680190 - MIR SINE MIR -31 231 51 2418 54 0 0 chr15 9015698 9015977 -76679777 + AluY SINE Alu 1 279 -32 233 29 29 0 chr15 9015977 9016011 -76679743 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2071 138 0 0 chr15 9016772 9017070 -76678684 + AluSx SINE Alu 3 300 -12 237 216 0 20 chr15 9017070 9017121 -76678633 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 9017160 9017203 -76678551 + AT_rich Low_complexity Low_complexity 1 43 0 267 173 77 0 chr15 9017603 9017655 -76678099 - L1ME4a LINE L1 -72 6049 5994 454 294 18 12 chr15 9017665 9017828 -76677926 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 2230 109 3 10 chr15 9017888 9018199 -76677555 + AluSx SINE Alu 1 309 -3 521 199 352 0 chr15 9018199 9018415 -76677339 - L1ME4a LINE L1 -303 5818 5527 1099 253 143 104 chr15 9018685 9019696 -76676058 + L1ME4a LINE L1 4409 5380 -741 2383 96 0 3 chr15 9019696 9019998 -76675756 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9019998 9020369 -76675385 + L1ME4a LINE L1 5380 5735 -386 606 103 0 0 chr15 9020369 9020456 -76675298 + L1MA3 LINE L1 6219 6305 0 1099 253 143 104 chr15 9020456 9020577 -76675177 + L1ME4a LINE L1 5735 5850 -271 2185 85 0 85 chr15 9020577 9020906 -76674848 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9020906 9021003 -76674751 + L1ME4a LINE L1 5850 6110 -11 1534 182 26 77 chr15 9021523 9021914 -76673840 + MLT1A2 LTR MaLR 4 374 0 252 299 41 0 chr15 9022381 9022478 -76673276 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 9023457 9023772 -76671982 - AluY SINE Alu 0 311 1 1590 80 40 18 chr15 9024057 9024282 -76671472 + MER30 DNA MER1_type 1 230 0 953 157 42 237 chr15 9024373 9024523 -76671231 - L1MD3 LINE L1 -10 7985 7808 667 189 15 8 chr15 9024523 9024655 -76671099 + U8 snRNA snRNA 4 136 0 953 157 42 237 chr15 9024655 9024879 -76670875 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 9024879 9024903 -76670851 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1990 114 0 0 chr15 9024904 9025167 -76670587 - AluSg SINE Alu -47 263 1 953 157 42 237 chr15 9025167 9025313 -76670441 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 9025785 9025943 -76669811 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 9026036 9026066 -76669688 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 9026833 9026861 -76668893 + AT_rich Low_complexity Low_complexity 1 28 0 2091 119 3 0 chr15 9028242 9028536 -76667218 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 9029164 9029209 -76666545 + AT_rich Low_complexity Low_complexity 1 45 0 830 150 0 15 chr15 9029514 9029647 -76666107 - FLAM_C SINE Alu -1 132 2 328 258 130 47 chr15 9029965 9030178 -76665576 + MIR SINE MIR 3 225 -37 1872 76 126 14 chr15 9030178 9030455 -76665299 - AluY SINE Alu -3 308 1 418 311 11 11 chr15 9031417 9031600 -76664154 - L1ME LINE L1 -400 5721 5539 1108 176 33 20 chr15 9031748 9031992 -76663762 - L1MB4 LINE L1 -12 6168 5922 3185 145 0 6 chr15 9031992 9032490 -76663264 - LOR1a LTR ERV1 0 497 3 1345 141 58 21 chr15 9032620 9032862 -76662892 + L1PB4 LINE L1 5905 6155 -1 2301 75 0 0 chr15 9032871 9033187 -76662567 + AluY SINE Alu 1 316 0 316 307 103 16 chr15 9033531 9033909 -76661845 - L1ME4a LINE L1 -2 6119 5709 235 328 54 37 chr15 9033915 9034210 -76661544 + L2 LINE L2 2766 3067 -205 2095 136 31 31 chr15 9035105 9035465 -76660289 + MLT1A1 LTR MaLR 6 365 0 3524 171 88 1 chr15 9035505 9036195 -76659559 + L1MB7 LINE L1 5377 6126 -58 399 157 0 0 chr15 9036195 9036265 -76659489 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 347 264 23 0 chr15 9036266 9036353 -76659401 - L1MC4 LINE L1 -1339 6703 6615 2353 98 0 19 chr15 9036405 9036722 -76659032 + AluSp SINE Alu 1 311 -2 2204 112 13 13 chr15 9037213 9037517 -76658237 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr15 9037608 9037636 -76658118 + AT_rich Low_complexity Low_complexity 1 28 0 679 189 8 8 chr15 9037651 9037773 -76657981 + FLAM_C SINE Alu 6 127 -16 24 0 0 0 chr15 9037865 9037889 -76657865 + AT_rich Low_complexity Low_complexity 1 24 0 366 236 27 45 chr15 9038215 9038325 -76657429 + L1ME4a LINE L1 5743 5850 -271 2333 88 3 0 chr15 9038333 9038629 -76657125 + AluSp SINE Alu 1 297 -16 2263 103 0 0 chr15 9038802 9039103 -76656651 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 9039335 9039356 -76656398 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 9039658 9039697 -76656057 + AT_rich Low_complexity Low_complexity 1 39 0 1411 159 12 78 chr15 9043873 9044089 -76651665 - AluJo SINE Alu 0 312 124 1880 110 28 41 chr15 9044089 9044379 -76651375 + AluSp SINE Alu 2 287 -26 1411 159 12 78 chr15 9044379 9044495 -76651259 - AluJo SINE Alu -188 124 2 1816 132 13 16 chr15 9044530 9044833 -76650921 + AluSp SINE Alu 5 306 -7 523 198 9 0 chr15 9044837 9044943 -76650811 - AluJb SINE Alu -204 108 2 1708 139 23 16 chr15 9044979 9045282 -76650472 + AluSp SINE Alu 6 310 -3 284 136 0 0 chr15 9045282 9045326 -76650428 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 9045317 9045756 -76649998 + MLT1D LTR MaLR 44 505 0 1751 194 23 33 chr15 9046295 9046693 -76649061 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 9046693 9046740 -76649014 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 9046740 9046883 -76648871 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 9047366 9047674 -76648080 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 9050700 9050733 -76645021 + AT_rich Low_complexity Low_complexity 1 33 0 518 204 138 13 chr15 9050776 9050928 -76644826 - MIR SINE MIR -64 198 28 2055 105 13 33 chr15 9051081 9051385 -76644369 - AluSx SINE Alu -12 300 3 342 67 0 0 chr15 9052549 9052594 -76643160 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 204 0 0 chr15 9052606 9052655 -76643099 + MIR SINE MIR 184 232 -30 944 247 127 33 chr15 9052685 9053199 -76642555 - HAL1 LINE L1 -877 1630 1069 632 237 117 94 chr15 9053200 9053724 -76642030 - MLT1H1 LTR MaLR 0 555 19 245 239 127 25 chr15 9053742 9053939 -76641815 - HAL1 LINE L1 -1437 1070 854 2253 117 3 0 chr15 9053966 9054265 -76641489 - AluSp SINE Alu -13 300 1 1846 144 3 31 chr15 9054329 9054663 -76641091 + AluJo SINE Alu 1 326 0 346 286 93 65 chr15 9054936 9055226 -76640528 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 9055609 9055826 -76639928 + MER20 DNA MER1_type 1 219 0 2525 60 0 13 chr15 9055956 9056258 -76639496 + AluY SINE Alu 5 302 -9 270 0 0 0 chr15 9056696 9056726 -76639028 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 9056726 9057005 -76638749 - AluY SINE Alu -27 284 1 2064 124 10 0 chr15 9058468 9058480 -76637274 - AluY SINE Alu -17 294 284 213 65 0 0 chr15 9058480 9058511 -76637243 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2064 124 10 0 chr15 9058511 9058789 -76636965 - AluY SINE Alu -27 284 1 334 251 99 41 chr15 9061446 9061469 -76634285 + MIR SINE MIR 12 32 -230 2211 105 7 3 chr15 9061469 9061764 -76633990 + AluY SINE Alu 1 296 -15 334 251 99 41 chr15 9061764 9061911 -76633843 + MIR SINE MIR 32 192 -70 225 364 0 0 chr15 9062842 9062941 -76632813 + MIR SINE MIR 31 129 -79 284 241 78 26 chr15 9062998 9063114 -76632640 + L2 LINE L2 3146 3267 -5 233 173 58 0 chr15 9064450 9064502 -76631252 + L1MC4a LINE L1 5885 5939 -1869 300 53 0 0 chr15 9064505 9064543 -76631211 + (TG)n Simple_repeat Simple_repeat 2 39 0 424 222 104 47 chr15 9064729 9064899 -76630855 + MIR SINE MIR 16 192 -58 1926 145 0 26 chr15 9067024 9067327 -76628427 + AluSx SINE Alu 3 297 -15 225 250 102 0 chr15 9067378 9067466 -76628288 + MIR SINE MIR 96 192 -70 917 175 0 18 chr15 9068172 9068338 -76627416 + 7SLRNA srpRNA srpRNA 95 257 -63 240 86 0 0 chr15 9069464 9069499 -76626255 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 35 0 0 chr15 9072833 9072862 -76622892 + AT_rich Low_complexity Low_complexity 1 29 0 240 83 0 0 chr15 9073532 9073568 -76622186 - MER5A DNA MER1_type -80 109 74 2316 60 3 13 chr15 9073572 9073871 -76621883 - AluY SINE Alu -15 296 1 303 196 0 0 chr15 9073886 9073932 -76621822 + Tigger3(Golem) DNA MER2_type 4 49 -2980 844 124 0 0 chr15 9073936 9074057 -76621697 - Tigger3(Golem) DNA MER2_type -746 2283 2163 399 198 10 79 chr15 9074054 9074155 -76621599 - Tigger3(Golem) DNA MER2_type -2869 160 67 * 2344 80 3 13 chr15 9074155 9074468 -76621286 - AluY SINE Alu -1 310 1 232 37 0 0 chr15 9074469 9074496 -76621258 - Tigger3(Golem) DNA MER2_type -2947 82 56 * 3955 122 69 36 chr15 9074494 9074563 -76621191 + Tigger3(Golem) DNA MER2_type 2276 2341 -687 1907 165 0 3 chr15 9074563 9074860 -76620894 - AluJb SINE Alu -16 296 1 3955 122 69 36 chr15 9074860 9075248 -76620506 + Tigger3(Golem) DNA MER2_type 2341 2768 -260 2380 101 3 0 chr15 9075248 9075555 -76620199 + AluSc SINE Alu 1 308 -1 3955 122 69 36 chr15 9075555 9075824 -76619930 + Tigger3(Golem) DNA MER2_type 2768 3027 -1 828 297 93 13 chr15 9075913 9076310 -76619444 - LTR16A LTR ERVL -6 444 16 2445 43 4 0 chr15 9076436 9076736 -76619018 + AluY SINE Alu 1 301 0 2000 113 0 0 chr15 9077192 9077449 -76618305 + AluSx SINE Alu 1 257 -55 296 289 107 8 chr15 9078605 9078726 -76617028 - L2 LINE L2 -4 3268 3136 282 309 89 30 chr15 9078826 9078994 -76616760 - MIR SINE MIR 0 262 85 1711 175 49 0 chr15 9079043 9079329 -76616425 + AluJb SINE Alu 1 300 -12 253 235 122 0 chr15 9079329 9079418 -76616336 - MER3 DNA MER1_type -3 159 56 370 197 197 16 chr15 9079573 9079700 -76616054 - L1MC4a LINE L1 -1883 5925 5776 * 1422 253 63 15 chr15 9079697 9079754 -76616000 + L1MC/D LINE L1 5377 5430 -2378 2165 122 0 0 chr15 9079754 9080050 -76615704 + AluSx SINE Alu 1 296 -16 1422 253 63 15 chr15 9080050 9080388 -76615366 + L1MC/D LINE L1 5430 5791 -2017 24 53 0 0 chr15 9080619 9080657 -76615097 + AT_rich Low_complexity Low_complexity 1 38 0 2373 94 0 0 chr15 9080740 9081047 -76614707 + AluSg1 SINE Alu 1 307 -2 253 283 123 47 chr15 9081768 9081874 -76613880 - L2 LINE L2 0 3313 3200 2044 152 0 0 chr15 9083052 9083348 -76612406 - AluSx SINE Alu -11 301 6 2788 137 98 7 chr15 9083508 9084049 -76611705 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9084050 9084265 -76611489 - L1PA13 LINE L1 0 6163 5950 209 57 29 0 chr15 9085613 9085648 -76610106 + (TTA)n Simple_repeat Simple_repeat 1 36 0 879 169 6 62 chr15 9085697 9085875 -76609879 - AluJb SINE Alu -144 168 1 2072 114 4 4 chr15 9085920 9086221 -76609533 - AluSx SINE Alu 0 303 3 889 182 40 45 chr15 9087231 9087407 -76608347 - MER20 DNA MER1_type 0 219 45 2538 64 0 3 chr15 9088140 9088452 -76607302 - AluY SINE Alu 0 311 1 315 283 91 43 chr15 9088491 9088678 -76607076 + MIR SINE MIR 36 231 -31 504 285 124 0 chr15 9089141 9089334 -76606420 - MIR SINE MIR -5 257 41 2329 51 3 37 chr15 9089337 9089632 -76606122 + AluY SINE Alu 5 289 -22 1047 179 66 0 chr15 9090869 9091081 -76604673 + AluJb SINE Alu 1 226 -86 805 104 9 0 chr15 9091268 9091374 -76604380 - AluSq/x SINE Alu -206 107 1 592 143 0 17 chr15 9091670 9091789 -76603965 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 2227 118 0 7 chr15 9091790 9092096 -76603658 - AluSx SINE Alu -8 304 1 2772 139 98 7 chr15 9092251 9092792 -76602962 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9092793 9093008 -76602746 - L1PA13 LINE L1 0 6163 5950 2668 7 0 0 chr15 9093425 9093706 -76602048 - AluYa5 SINE Alu -9 302 22 229 282 0 0 chr15 9094605 9094676 -76601078 + T-rich Low_complexity Low_complexity 1 71 0 907 154 6 82 chr15 9094727 9094909 -76600845 - AluJo SINE Alu -144 168 1 2383 94 0 3 chr15 9094952 9095259 -76600495 - AluSx SINE Alu -4 308 3 290 298 107 8 chr15 9096077 9096198 -76599556 - L2 LINE L2 -4 3268 3136 262 270 78 43 chr15 9096351 9096466 -76599288 - MIR SINE MIR -59 203 85 433 270 57 0 chr15 9096499 9096515 -76599239 - MER3 DNA MER1_type 6 168 154 1777 170 49 0 chr15 9096515 9096803 -76598951 + AluJb SINE Alu 1 302 -10 433 270 57 0 chr15 9096803 9096945 -76598809 - MER3 DNA MER1_type -8 154 1 1236 159 15 0 chr15 9097349 9097544 -76598210 + AluJo SINE Alu 4 201 -111 313 326 126 23 chr15 9099819 9099994 -76595760 + L1MEd LINE L1 908 1100 -5019 427 189 14 0 chr15 9100008 9100082 -76595672 + MER33 DNA MER1_type 4 78 -246 529 285 104 10 chr15 9100131 9100324 -76595430 + L2 LINE L2 3103 3313 0 238 288 16 114 chr15 9101510 9101524 -76594230 + L2 LINE L2 2896 2910 -362 1997 130 0 18 chr15 9101524 9101844 -76593910 - AluSx SINE Alu 0 320 6 238 288 16 114 chr15 9101844 9102012 -76593742 + L2 LINE L2 2910 3061 -211 1350 179 0 17 chr15 9102384 9102618 -76593136 + AluSg/x SINE Alu 83 312 0 273 149 23 11 chr15 9103016 9103103 -76592651 + (TG)n Simple_repeat Simple_repeat 1 88 0 2475 74 0 3 chr15 9103472 9103783 -76591971 + AluY SINE Alu 1 310 -1 229 178 22 0 chr15 9104201 9104246 -76591508 + Alu SINE Alu 121 166 -137 248 250 31 0 chr15 9104480 9104544 -76591210 + MLT1K LTR MaLR 484 549 -39 1968 122 7 0 chr15 9104698 9104969 -76590785 - AluSq SINE Alu -6 307 35 191 352 57 9 chr15 9105249 9105354 -76590400 + L2 LINE L2 3199 3308 -5 531 268 89 89 chr15 9105727 9105842 -76589912 + MIR SINE MIR 25 142 -120 1762 117 0 0 chr15 9105842 9106073 -76589681 + AluSx SINE Alu 58 288 -24 531 268 89 89 chr15 9106073 9106181 -76589573 + MIR SINE MIR 141 248 -14 1880 206 86 112 chr15 9106226 9106488 -76589266 + L1MC4a LINE L1 6045 6312 -1496 1441 72 111 5 chr15 9106488 9106696 -76589058 - MER30 DNA MER1_type 0 230 1 1880 206 86 112 chr15 9106696 9107273 -76588481 + L1MC4a LINE L1 6312 6862 -946 1853 164 0 26 chr15 9107549 9107874 -76587880 - AluSx SINE Alu 0 312 1 289 294 17 26 chr15 9107986 9108109 -76587645 - L1M4 LINE L1 -2005 4141 4020 739 219 26 0 chr15 9108125 9108280 -76587474 + AluJb SINE Alu 137 295 -17 227 317 0 49 chr15 9108307 9108449 -76587305 - L1M4 LINE L1 -2310 3836 3702 513 316 66 13 chr15 9108450 9108678 -76587076 - MIR SINE MIR -10 252 13 2068 123 0 19 chr15 9109041 9109349 -76586405 - AluY SINE Alu -9 302 1 2184 126 0 19 chr15 9109556 9109873 -76585881 - AluSx SINE Alu -1 311 1 299 261 112 8 chr15 9111394 9111528 -76584226 + MIR SINE MIR 21 168 -94 366 286 164 0 chr15 9111561 9111701 -76584053 + MER5A DNA MER1_type 1 163 -26 416 233 52 9 chr15 9112565 9112681 -76583073 + MIR3 SINE MIR 52 172 -36 314 343 22 7 chr15 9113896 9114033 -76581721 + L2 LINE L2 2250 2388 -926 323 304 59 59 chr15 9114883 9115087 -76580667 - MLT1L LTR MaLR -407 208 5 635 213 41 6 chr15 9116246 9116415 -76579339 + L1ME2 LINE L1 5986 6160 -4 2039 136 3 7 chr15 9116437 9116739 -76579015 + AluSx SINE Alu 1 301 -11 2007 97 104 0 chr15 9117370 9117639 -76578115 - AluSx SINE Alu -15 297 1 30 27 0 0 chr15 9117650 9117687 -76578067 + AT_rich Low_complexity Low_complexity 1 37 0 200 409 0 0 chr15 9118427 9118591 -76577163 + C-rich Low_complexity Low_complexity 1 164 0 * 449 292 0 52 chr15 9118475 9118714 -76577040 + CT-rich Low_complexity Low_complexity 1 226 0 450 340 0 12 chr15 9118842 9119178 -76576576 + CT-rich Low_complexity Low_complexity 1 332 0 181 378 92 0 chr15 9119381 9119500 -76576254 - MER5B DNA MER1_type -32 146 17 200 346 185 0 chr15 9119836 9119966 -76575788 - MIR3 SINE MIR -2 206 53 802 127 6 22 chr15 9120323 9120504 -76575250 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1559 137 17 0 chr15 9120506 9120739 -76575015 - AluSp SINE Alu -1 312 76 265 247 87 10 chr15 9120788 9120955 -76574799 + L1P5 LINE L1 5292 5474 -647 627 223 97 24 chr15 9121675 9121881 -76573873 - MLT1J LTR MaLR 0 511 291 461 31 0 16 chr15 9122189 9122253 -76573501 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1846 112 8 4 chr15 9122268 9122518 -76573236 - AluSx SINE Alu -61 251 1 707 218 77 0 chr15 9122698 9122868 -76572886 + MER5A DNA MER1_type 5 187 -2 653 293 27 40 chr15 9123084 9123412 -76572342 + L1MC4 LINE L1 7719 8042 0 250 208 130 0 chr15 9123889 9123966 -76571788 - L1 LINE L1 -1310 4836 4750 2342 90 0 7 chr15 9123988 9124288 -76571466 - AluY SINE Alu -13 298 1 709 110 9 0 chr15 9124293 9124402 -76571352 - MLT1B LTR MaLR -218 172 63 2388 94 0 0 chr15 9124544 9124841 -76570913 - AluSg1 SINE Alu -12 297 1 290 299 65 60 chr15 9125956 9126157 -76569597 + MIR3 SINE MIR 2 203 -5 1917 171 0 3 chr15 9127382 9127691 -76568063 + AluJo SINE Alu 1 308 -4 369 250 85 80 chr15 9128954 9129142 -76566612 + MIR SINE MIR 31 219 -43 391 262 27 86 chr15 9129305 9129492 -76566262 + MER5A DNA MER1_type 7 182 -7 359 243 97 10 chr15 9129932 9130035 -76565719 + MIR3 SINE MIR 11 122 -86 317 43 21 0 chr15 9130558 9130605 -76565149 + (CA)n Simple_repeat Simple_repeat 2 49 0 1672 117 12 4 chr15 9130848 9131095 -76564659 + AluSx SINE Alu 52 300 -12 2355 128 113 18 chr15 9131392 9131783 -76563971 - MSTA LTR MaLR 0 428 1 319 304 186 14 chr15 9131792 9132088 -76563666 - L2 LINE L2 -348 2966 2620 497 135 11 0 chr15 9132458 9132547 -76563207 + (TG)n Simple_repeat Simple_repeat 1 90 0 243 293 73 49 chr15 9133019 9133142 -76562612 - L2 LINE L2 -2141 1173 1048 509 271 269 22 chr15 9133222 9133683 -76562071 - L2 LINE L2 -340 2974 2400 584 320 51 22 chr15 9133991 9134408 -76561346 + L2 LINE L2 2654 3083 -189 372 43 0 0 chr15 9134535 9134581 -76561173 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 337 310 158 19 chr15 9135040 9135263 -76560491 - MIR SINE MIR -6 256 4 3570 168 60 172 chr15 9135380 9135622 -76560132 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 9135622 9135647 -76560107 + (CA)n Simple_repeat Simple_repeat 2 26 0 3570 168 60 172 chr15 9135647 9135670 -76560084 + L1MB7 LINE L1 4255 4279 -1899 2280 131 0 0 chr15 9135670 9135982 -76559772 + AluSx SINE Alu 1 312 0 3570 168 60 172 chr15 9135982 9136376 -76559378 + L1MB7 LINE L1 4279 4716 -1462 2002 148 7 0 chr15 9136376 9136680 -76559074 + AluJb SINE Alu 1 306 -6 3570 168 60 172 chr15 9136680 9137010 -76558744 + L1MB7 LINE L1 4716 5081 -1097 1178 190 5 0 chr15 9137010 9137205 -76558549 + AluJb SINE Alu 96 291 -21 3570 168 60 172 chr15 9137205 9137409 -76558345 + L1MB7 LINE L1 5081 5154 -1024 2271 114 0 10 chr15 9137409 9137715 -76558039 + AluSq SINE Alu 1 303 -10 3570 168 60 172 chr15 9137715 9138027 -76557727 + L1MB7 LINE L1 5154 5499 -679 * 5695 36 0 0 chr15 9138024 9138724 -76557030 - L1PA4 LINE L1 -1441 4705 4006 7580 33 3 1 chr15 9138724 9140176 -76555578 + L1PA4 LINE L1 4702 6155 0 2990 134 61 78 chr15 9140178 9140482 -76555272 + L1MB7 LINE L1 5494 5802 -382 1906 155 7 0 chr15 9140482 9140778 -76554976 + AluJo SINE Alu 1 298 -14 2990 134 61 78 chr15 9140778 9141176 -76554578 + L1MB7 LINE L1 5802 6184 0 191 219 49 0 chr15 9141785 9141826 -76553928 - L2 LINE L2 -6 3307 3265 388 238 30 0 chr15 9142002 9142103 -76553651 + L1ME LINE L1 5714 5817 -304 748 284 60 0 chr15 9142717 9142932 -76552822 + MIR SINE MIR 5 232 -30 305 183 11 53 chr15 9142944 9143037 -76552717 - FRAM SINE Alu -68 98 41 233 189 0 0 chr15 9143063 9143100 -76552654 - Alu SINE Alu -12 121 85 1621 175 3 21 chr15 9144301 9144586 -76551168 + AluJo SINE Alu 10 289 -23 311 251 34 19 chr15 9144632 9144739 -76551015 + MIR3 SINE MIR 59 170 -38 294 29 0 0 chr15 9146748 9146783 -76548971 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr15 9148927 9148958 -76546796 + AT_rich Low_complexity Low_complexity 1 31 0 1592 172 62 14 chr15 9149891 9150181 -76545573 - AluJo SINE Alu -7 305 2 329 294 143 53 chr15 9150197 9150462 -76545292 - L1M4 LINE L1 -1984 4162 3874 1712 156 4 7 chr15 9150974 9151243 -76544511 - AluJo SINE Alu -43 269 2 21 0 0 0 chr15 9151252 9151273 -76544481 + AT_rich Low_complexity Low_complexity 1 21 0 1777 180 3 7 chr15 9151691 9151997 -76543757 - AluJo SINE Alu -7 305 1 2146 119 10 0 chr15 9152054 9152348 -76543406 + AluSx SINE Alu 5 301 -11 341 289 10 10 chr15 9205296 9205393 -76490361 - MIR SINE MIR -102 160 64 334 291 39 21 chr15 9205417 9205623 -76490131 - MIR SINE MIR -5 257 10 1366 182 42 6 chr15 9205642 9205955 -76489799 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr15 9205963 9205984 -76489770 + AT_rich Low_complexity Low_complexity 1 21 0 2185 119 0 7 chr15 9206414 9206717 -76489037 - AluSx SINE Alu -7 305 5 330 321 128 5 chr15 9209723 9209910 -76485844 - MIR SINE MIR -6 256 47 180 0 0 0 chr15 9211660 9211680 -76484074 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr15 9212102 9212124 -76483630 + AT_rich Low_complexity Low_complexity 1 22 0 487 188 21 0 chr15 9212156 9212252 -76483502 + MER5A DNA MER1_type 9 106 -83 432 0 0 0 chr15 9212274 9212322 -76483432 + (TG)n Simple_repeat Simple_repeat 2 49 0 1930 112 48 0 chr15 9212489 9212777 -76482977 - AluSg SINE Alu 0 301 1 271 352 25 76 chr15 9214421 9214657 -76481097 + L2 LINE L2 3034 3257 -15 25 0 0 0 chr15 9214832 9214857 -76480897 + AT_rich Low_complexity Low_complexity 1 25 0 926 264 105 54 chr15 9217106 9217659 -76478095 + L1ME4a LINE L1 5302 5882 -239 2059 130 3 23 chr15 9217953 9218260 -76477494 - AluSx SINE Alu -11 301 1 2390 76 0 10 chr15 9218954 9219256 -76476498 - AluY SINE Alu -12 299 1 720 230 158 27 chr15 9219632 9219854 -76475900 + MIR SINE MIR 12 262 0 511 139 13 0 chr15 9219965 9220044 -76475710 + MADE1 DNA Mariner 1 80 0 393 303 70 14 chr15 9220044 9220186 -76475568 - MIR SINE MIR -111 151 2 444 181 0 0 chr15 9220230 9220313 -76475441 - AluJo SINE Alu 0 312 230 1239 174 0 0 chr15 9220321 9220505 -76475249 - AluJo SINE Alu -123 189 6 859 204 11 27 chr15 9220874 9221060 -76474694 + MER5A DNA MER1_type 1 183 -6 299 278 126 13 chr15 9222321 9222472 -76473282 - MIR SINE MIR -6 256 89 1069 227 84 80 chr15 9222685 9223125 -76472629 - MLT1J1 LTR MaLR 0 446 5 857 348 116 29 chr15 9223782 9224466 -76471288 + L3 LINE CR1 74 816 -761 194 314 10 39 chr15 9224612 9224714 -76471040 + L2 LINE L2 1337 1435 -1879 226 243 0 40 chr15 9225310 9225384 -76470370 + GA-rich Low_complexity Low_complexity 2 72 0 306 306 41 0 chr15 9225484 9225582 -76470172 - L2 LINE L2 -30 3242 3141 190 284 0 54 chr15 9226559 9226633 -76469121 - L2 LINE L2 -10 3262 3193 357 264 253 0 chr15 9226691 9226869 -76468885 - MIR SINE MIR -10 252 30 2208 219 158 28 chr15 9227204 9227437 -76468317 - L1MC4 LINE L1 -451 7591 7390 2500 63 0 3 chr15 9227437 9227739 -76468015 + AluY SINE Alu 1 301 -10 2208 219 158 28 chr15 9227739 9227949 -76467805 - L1MC4 LINE L1 -652 7390 7209 195 114 0 0 chr15 9227949 9227984 -76467770 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2208 219 158 28 chr15 9227984 9228265 -76467489 - L1MC4 LINE L1 -833 7209 6771 2391 44 0 0 chr15 9228598 9228872 -76466882 - AluY SINE Alu -8 303 30 2198 107 0 0 chr15 9232588 9232894 -76462860 + AluSx SINE Alu 1 306 0 23 0 0 0 chr15 9233400 9233423 -76462331 + AT_rich Low_complexity Low_complexity 1 23 0 2610 61 0 0 chr15 9233764 9234074 -76461680 - AluY SINE Alu -1 310 1 21 0 0 0 chr15 9234665 9234686 -76461068 + AT_rich Low_complexity Low_complexity 1 21 0 2620 64 0 0 chr15 9234865 9235176 -76460578 - AluY SINE Alu 0 311 1 254 281 10 42 chr15 9235920 9236016 -76459738 - MIR SINE MIR -56 206 114 1244 194 94 65 chr15 9236041 9236520 -76459234 + L1MC5 LINE L1 7388 7880 -81 2041 141 3 3 chr15 9236529 9236841 -76458913 - AluSx SINE Alu 0 312 1 2263 115 3 0 chr15 9236947 9237251 -76458503 + AluSp SINE Alu 3 307 -6 2075 109 0 53 chr15 9238519 9238841 -76456913 + AluSq SINE Alu 1 305 -8 392 301 44 15 chr15 9239051 9239187 -76456567 - MIR SINE MIR -120 142 3 2108 149 95 0 chr15 9239193 9239561 -76456193 - MER57A LTR ERV1 0 403 1 2441 64 0 7 chr15 9239843 9240141 -76455613 - AluY SINE Alu -15 296 1 248 250 32 105 chr15 9241488 9241612 -76454142 - L2 LINE L2 0 3313 3199 455 309 63 11 chr15 9241681 9241856 -76453898 + MIR SINE MIR 1 184 -78 2248 145 6 6 chr15 9242355 9242692 -76453062 + MER1B DNA MER1_type 1 337 0 437 242 83 8 chr15 9244722 9244842 -76450912 - MER5B DNA MER1_type 0 178 50 258 282 58 63 chr15 9244724 9244898 -76450856 + MER5A DNA MER1_type 17 189 0 * 1822 140 51 14 chr15 9245861 9246154 -76449600 + AluJb SINE Alu 1 304 -8 380 267 61 15 chr15 9246247 9246378 -76449376 - L2 LINE L2 0 3272 3136 2081 111 4 7 chr15 9246491 9246815 -76448939 + AluSc SINE Alu 1 323 0 251 304 13 0 chr15 9246849 9246928 -76448826 - L2 LINE L2 -663 2651 2572 246 128 0 0 chr15 9247743 9247782 -76447972 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 2013 135 0 20 chr15 9248951 9249254 -76446500 + AluSx SINE Alu 1 297 -15 315 105 0 0 chr15 9249269 9249326 -76446428 + (GA)n Simple_repeat Simple_repeat 2 58 0 2637 62 0 0 chr15 9249424 9249733 -76446021 - AluY SINE Alu 0 311 3 587 311 70 4 chr15 9249966 9250194 -76445560 + MIR SINE MIR 6 248 -14 258 32 0 0 chr15 9250219 9250250 -76445504 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 212 74 132 chr15 9250269 9250423 -76445331 + L1ME4a LINE L1 5769 5930 -191 195 42 0 0 chr15 9250423 9250447 -76445307 + (TC)n Simple_repeat Simple_repeat 1 24 0 396 212 74 132 chr15 9250447 9250655 -76445099 + L1ME4a LINE L1 5930 6110 -11 216 0 0 0 chr15 9250866 9250890 -76444864 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr15 9251499 9251523 -76444231 + (A)n Simple_repeat Simple_repeat 1 24 0 310 259 30 0 chr15 9251558 9251693 -76444061 + CT-rich Low_complexity Low_complexity 2 140 0 2659 42 0 0 chr15 9251787 9252096 -76443658 + AluY SINE Alu 1 309 -2 375 313 83 14 chr15 9252187 9252404 -76443350 - MIR SINE MIR -24 238 7 910 284 59 66 chr15 9253114 9253770 -76441984 - L1MC4a LINE L1 -345 5817 5279 235 296 28 83 chr15 9254458 9254566 -76441188 + L2 LINE L2 3190 3291 -22 * 364 226 58 58 chr15 9254565 9254702 -76441052 - L2 LINE L2 0 3313 3177 285 75 0 0 chr15 9258823 9258863 -76436891 + (TG)n Simple_repeat Simple_repeat 2 41 0 618 266 38 61 chr15 9259566 9259629 -76436125 + MIR SINE MIR 6 69 -193 2183 112 3 3 chr15 9259629 9259942 -76435812 + AluSp SINE Alu 1 313 0 618 266 38 61 chr15 9259942 9260141 -76435613 + MIR SINE MIR 69 262 0 2006 107 39 4 chr15 9260227 9260508 -76435246 + AluSg SINE Alu 1 291 -19 269 217 188 0 chr15 9262793 9262862 -76432892 - L2 LINE L2 -2 3270 3189 7622 55 9 0 chr15 9263395 9264908 -76430846 - L1PA7 LINE L1 -2 6152 4630 15209 82 17 9 chr15 9264908 9267032 -76428722 + L1P LINE L1 2641 4781 -1365 22 35 0 0 chr15 9267251 9267280 -76428474 + AT_rich Low_complexity Low_complexity 1 29 0 2503 60 0 13 chr15 9267681 9267996 -76427758 - AluY SINE Alu 0 311 1 327 315 167 12 chr15 9269109 9269271 -76426483 + MIR SINE MIR 36 222 -40 24 0 0 0 chr15 9269288 9269312 -76426442 + AT_rich Low_complexity Low_complexity 1 24 0 521 332 14 27 chr15 9273678 9273898 -76421856 + L3 LINE CR1 1347 1563 -14 297 281 0 24 chr15 9273975 9274057 -76421697 - MIR SINE MIR -36 226 147 4011 213 56 35 chr15 9274471 9275416 -76420338 + L1M4 LINE L1 5 969 -5573 1277 193 37 15 chr15 9275440 9275709 -76420045 + LTR52 LTR ERVL 144 418 -3 4786 209 51 43 chr15 9275714 9276313 -76419441 + L1M4 LINE L1 3908 4501 -2143 2391 96 0 3 chr15 9276313 9276625 -76419129 + AluSp SINE Alu 1 311 -2 4786 209 51 43 chr15 9276625 9277348 -76418406 + L1M4 LINE L1 4501 5241 -1403 1599 181 77 14 chr15 9277352 9277639 -76418115 + AluJo SINE Alu 1 305 -7 917 213 48 0 chr15 9277640 9277847 -76417907 + L1M4 LINE L1 4548 4764 -1880 2869 216 40 7 chr15 9278243 9279408 -76416346 + L1 LINE L1 3 1375 -4516 342 300 59 41 chr15 9279458 9279628 -76416126 - MLT1K LTR MaLR -282 306 134 4997 196 20 10 chr15 9280028 9281065 -76414689 - L1 LINE L1 -1671 4475 3428 3553 179 32 7 chr15 9281071 9281757 -76413997 + L1 LINE L1 4343 5045 -925 451 269 93 84 chr15 9281760 9282094 -76413660 + MLT1K LTR MaLR 143 479 -109 1106 226 20 8 chr15 9282114 9282362 -76413392 - MLT1F1 LTR MaLR 0 567 317 999 226 92 38 chr15 9282567 9282828 -76412926 - MLT1F1 LTR MaLR -280 287 13 441 172 69 0 chr15 9282838 9282925 -76412829 + MLT1K LTR MaLR 494 586 -2 2442 66 3 3 chr15 9282959 9283262 -76412492 + AluY SINE Alu 1 303 -8 2171 128 0 0 chr15 9286044 9286348 -76409406 - AluSx SINE Alu -8 304 1 1924 156 0 3 chr15 9287518 9287807 -76407947 - AluSx SINE Alu -19 293 6 235 292 73 51 chr15 9287940 9288077 -76407677 + MIR3 SINE MIR 21 160 -48 222 299 87 39 chr15 9288172 9288299 -76407455 - MIR3 SINE MIR -61 147 15 2208 101 0 10 chr15 9288303 9288599 -76407155 - AluSq SINE Alu -20 293 1 272 326 105 0 chr15 9290055 9290193 -76405561 - MIR SINE MIR -65 143 35 495 186 0 0 chr15 9290203 9290305 -76405449 + CT-rich Low_complexity Low_complexity 3 104 0 622 269 96 0 chr15 9290542 9290698 -76405056 + MER45A DNA AcHobo 8 178 0 1303 239 95 26 chr15 9290818 9291282 -76404472 - L1ME3A LINE L1 -224 5929 5434 1224 110 22 16 chr15 9291312 9291494 -76404260 - AluSg/x SINE Alu -10 302 120 793 289 97 33 chr15 9291501 9292290 -76403464 - L1ME3A LINE L1 -743 5386 4530 1585 168 32 72 chr15 9292291 9292611 -76403143 + MLT1A1 LTR MaLR 5 336 -29 2578 118 91 30 chr15 9292611 9292806 -76402948 + MSTB1 LTR MaLR 1 183 -249 2222 89 3 7 chr15 9292806 9293109 -76402645 + AluSg SINE Alu 2 303 -7 2578 118 91 30 chr15 9293109 9293318 -76402436 + MSTB1 LTR MaLR 183 430 -2 1585 168 32 72 chr15 9293318 9293333 -76402421 + MLT1A1 LTR MaLR 336 350 -15 2139 137 3 0 chr15 9293333 9293639 -76402115 - AluJb SINE Alu -5 307 1 1585 168 32 72 chr15 9293639 9293678 -76402076 + MLT1A1 LTR MaLR 350 365 0 1543 256 120 36 chr15 9294200 9295057 -76400697 - L1ME3A LINE L1 -1958 4171 3243 * 5328 133 8 17 chr15 9295034 9296623 -76399131 - L1MA1 LINE L1 -243 6042 4471 1063 279 127 33 chr15 9296624 9297513 -76398241 - L1ME3A LINE L1 -2853 3276 2304 324 274 91 48 chr15 9297635 9297843 -76397911 - L1ME3A LINE L1 -3969 2341 2125 4361 118 20 3 chr15 9297843 9298497 -76397257 - Tigger4(Zombi) DNA MER2_type -1 2730 2066 1015 134 117 0 chr15 9298496 9298667 -76397087 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 410 289 90 56 chr15 9298686 9299041 -76396713 - L1MDa LINE L1 -4785 1344 1003 2455 67 0 3 chr15 9299041 9299339 -76396415 - AluY SINE Alu -14 297 1 410 289 90 56 chr15 9299339 9299723 -76396031 - L1MDa LINE L1 -5126 1003 562 886 187 34 9 chr15 9299723 9299909 -76395845 - MER20 DNA MER1_type -12 207 2 1739 174 6 40 chr15 9300787 9301114 -76394640 + LTR62 LTR ERVK 1 316 -403 2385 100 47 0 chr15 9301118 9301457 -76394297 - THE1A LTR MaLR 0 355 1 1733 72 4 0 chr15 9301457 9301692 -76394062 - THE1A-int LTR MaLR 0 1580 1345 2495 62 0 3 chr15 9301692 9301996 -76393758 + AluY SINE Alu 1 303 -8 934 211 93 117 chr15 9302180 9302729 -76393025 + MLT1F LTR MaLR 1 542 0 896 254 111 18 chr15 9302937 9303271 -76392483 + MLT1A1 LTR MaLR 1 365 0 210 281 49 49 chr15 9303611 9303693 -76392061 + MIR SINE MIR 30 111 -97 21 0 0 0 chr15 9304678 9304699 -76391055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 9306621 9306642 -76389112 + AT_rich Low_complexity Low_complexity 1 21 0 2389 55 7 3 chr15 9309973 9310263 -76385491 - AluY SINE Alu -20 291 1 474 259 149 18 chr15 9314886 9315114 -76380640 - MIR SINE MIR -3 259 2 363 341 24 24 chr15 9315226 9315352 -76380402 + MIR SINE MIR 25 150 -58 241 284 30 0 chr15 9315818 9315885 -76379869 + GA-rich Low_complexity Low_complexity 4 72 0 323 133 86 0 chr15 9316322 9316473 -76379281 + (TA)n Simple_repeat Simple_repeat 2 165 0 379 159 33 71 chr15 9316570 9316752 -76379002 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 320 117 98 0 chr15 9316761 9316924 -76378830 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 106 43 0 chr15 9316948 9316995 -76378759 + (TA)n Simple_repeat Simple_repeat 2 50 0 636 99 0 0 chr15 9316995 9317076 -76378678 - AluSg/x SINE Alu -23 287 207 3857 155 59 62 chr15 9317076 9318050 -76377704 + L1MB7 LINE L1 5211 6184 0 314 308 136 18 chr15 9318066 9318339 -76377415 + L1MC/D LINE L1 5438 5742 -2066 511 254 48 0 chr15 9318375 9318501 -76377253 - MIR SINE MIR 0 262 131 495 315 73 0 chr15 9318674 9318839 -76376915 + MIR SINE MIR 11 187 -75 3846 115 2 4 chr15 9318844 9319399 -76376355 + MER41A LTR ERV1 1 554 0 286 113 57 0 chr15 9319399 9319452 -76376302 + MER41A-int LTR ERV1 1 56 -7700 25 0 0 0 chr15 9319854 9319879 -76375875 + AT_rich Low_complexity Low_complexity 1 25 0 495 291 7 14 chr15 9320155 9320296 -76375458 - MER58A DNA MER1_type 0 140 1 341 270 50 38 chr15 9320389 9320551 -76375203 + MIR SINE MIR 45 205 -57 212 302 0 16 chr15 9321242 9321305 -76374449 - MIR SINE MIR -59 149 88 2115 153 32 19 chr15 9321451 9321862 -76373892 + L1PB4 LINE L1 5741 6156 0 2465 74 10 7 chr15 9322164 9322474 -76373280 + AluY SINE Alu 1 311 0 297 0 0 0 chr15 9323114 9323147 -76372607 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 489 76 0 0 chr15 9323835 9323901 -76371853 + (TG)n Simple_repeat Simple_repeat 2 67 0 948 162 0 0 chr15 9323918 9324054 -76371700 - FLAM_C SINE Alu -5 138 3 1566 169 41 31 chr15 9326268 9326558 -76369196 + AluJo SINE Alu 1 293 -19 211 273 45 57 chr15 9327793 9327881 -76367873 - L2 LINE L2 0 3272 3186 3752 121 19 3 chr15 9328160 9328745 -76367009 + MER7C DNA MER2_type 2 595 -7 201 245 0 19 chr15 9328982 9329035 -76366719 - MIR3 SINE MIR -6 202 151 268 324 61 4 chr15 9329186 9329312 -76366442 - MER5A DNA MER1_type -37 152 1 453 344 145 37 chr15 9330143 9330881 -76364873 - L2 LINE L2 -533 2781 1964 2109 78 0 21 chr15 9330891 9331174 -76364580 + AluY SINE Alu 35 311 0 794 256 124 42 chr15 9331260 9331710 -76364044 + MLT1J LTR MaLR 25 511 0 2288 107 7 3 chr15 9331971 9332280 -76363474 - AluSx SINE Alu -2 310 1 203 179 0 0 chr15 9333268 9333307 -76362447 + A-rich Low_complexity Low_complexity 1 39 0 1859 128 4 19 chr15 9333616 9333881 -76361873 + AluJo SINE Alu 4 264 -48 367 252 14 91 chr15 9334145 9334288 -76361466 - MIR3 SINE MIR -6 202 71 357 24 0 0 chr15 9336875 9336917 -76358837 + (CA)n Simple_repeat Simple_repeat 2 43 0 321 353 9 0 chr15 9338103 9338219 -76357535 + MIR3 SINE MIR 54 170 -38 351 359 111 11 chr15 9339291 9339472 -76356282 - MIR3 SINE MIR -5 203 5 2018 99 0 87 chr15 9340182 9340515 -76355239 + AluY SINE Alu 1 304 -7 181 290 16 32 chr15 9342195 9342257 -76353497 + L3b LINE CR1 1507 1567 -16 1027 178 61 4 chr15 9342685 9342916 -76352838 + L1MB3 LINE L1 5864 6107 -76 6991 48 22 0 chr15 9343211 9344269 -76351485 - L1PA6 LINE L1 0 6154 5084 350 288 93 0 chr15 9344289 9344407 -76351347 + MER94 DNA DNA 5 133 -1 399 192 212 0 chr15 9344514 9344613 -76351141 - Charlie4 DNA MER1_type -24 1937 1818 580 246 84 22 chr15 9344967 9345146 -76350608 + MIR SINE MIR 57 246 -16 529 298 63 54 chr15 9345211 9345736 -76350018 + L2 LINE L2 2725 3251 -62 285 262 131 16 chr15 9346955 9347077 -76348677 + MIR SINE MIR 28 163 -99 585 302 86 5 chr15 9347193 9347415 -76348339 + MIR SINE MIR 3 242 -20 265 262 36 24 chr15 9347676 9347760 -76347994 - L3b LINE CR1 -208 1375 1291 2254 108 10 0 chr15 9348619 9348914 -76346840 - AluSx SINE Alu -14 298 1 2159 93 59 3 chr15 9350357 9350646 -76345108 - AluSx SINE Alu -7 305 1 315 0 0 0 chr15 9350713 9350748 -76345006 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 651 241 23 0 chr15 9350784 9350958 -76344796 - MER105 DNA DNA -3 201 24 1389 147 39 108 chr15 9351035 9351423 -76344331 - MER46B DNA MER2_type 0 236 1 1865 140 71 9 chr15 9351628 9351950 -76343804 - MER2 DNA MER2_type 0 344 3 21 0 0 0 chr15 9352983 9353004 -76342750 + AT_rich Low_complexity Low_complexity 1 21 0 2443 42 0 0 chr15 9353625 9353939 -76341815 - AluY SINE Alu 0 314 1 205 138 0 0 chr15 9354462 9354491 -76341263 + (TGG)n Simple_repeat Simple_repeat 1 29 0 472 317 70 5 chr15 9354584 9354770 -76340984 + MIR SINE MIR 64 261 -1 241 308 110 0 chr15 9355275 9355366 -76340388 - MIR3 SINE MIR -103 105 5 225 287 93 8 chr15 9356673 9356802 -76338952 - L1ME4a LINE L1 -1 6120 5981 32 43 0 0 chr15 9356957 9357003 -76338751 + AT_rich Low_complexity Low_complexity 1 46 0 424 266 144 29 chr15 9359473 9359751 -76336003 - L1ME4a LINE L1 -875 5271 4962 2366 90 0 3 chr15 9360147 9360447 -76335307 - AluSg1 SINE Alu -10 299 1 2006 100 0 4 chr15 9360785 9361045 -76334709 + AluSx SINE Alu 22 280 -32 189 0 0 0 chr15 9361045 9361066 -76334688 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 373 251 25 31 chr15 9361086 9361249 -76334505 - HAL1 LINE L1 -842 1665 1504 2533 71 0 10 chr15 9361850 9362161 -76333593 - AluY SINE Alu -3 308 1 985 158 0 13 chr15 9363294 9363452 -76332302 - FRAM SINE Alu -7 159 4 982 328 119 39 chr15 9363498 9364424 -76331330 + L2 LINE L2 2222 3268 -4 2229 72 31 10 chr15 9366266 9366557 -76329197 + AluY SINE Alu 1 297 -14 1892 130 69 0 chr15 9366708 9366984 -76328770 + AluSx SINE Alu 1 295 -17 380 245 105 7 chr15 9369772 9369915 -76325839 + MIR SINE MIR 106 262 0 1039 123 7 0 chr15 9369916 9370062 -76325692 - AluSg/x SINE Alu -12 300 154 1992 91 4 4 chr15 9371195 9371449 -76324305 + AluSc SINE Alu 1 254 -55 22 0 0 0 chr15 9372891 9372913 -76322841 + AT_rich Low_complexity Low_complexity 1 22 0 1652 184 7 7 chr15 9374549 9374858 -76320896 - AluJo SINE Alu -3 309 1 571 282 79 0 chr15 9376199 9376401 -76319353 - L2 LINE L2 -1153 2161 1944 495 292 124 13 chr15 9380736 9381186 -76314568 + MLT1G LTR MaLR 41 523 -19 385 283 20 20 chr15 9381227 9381326 -76314428 + L2 LINE L2 3147 3245 -27 211 264 58 109 chr15 9381392 9381541 -76314213 - MIR SINE MIR -50 212 72 2377 105 0 3 chr15 9381541 9381854 -76313900 + AluSp SINE Alu 1 312 -1 211 264 58 109 chr15 9381854 9381878 -76313876 - MIR SINE MIR -190 72 48 24 32 0 0 chr15 9382676 9382707 -76313047 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr15 9383125 9383172 -76312582 + AT_rich Low_complexity Low_complexity 1 47 0 287 294 49 10 chr15 9384286 9384388 -76311366 + MIR SINE MIR 86 191 -71 461 304 22 40 chr15 9384579 9384773 -76310981 - MIR SINE MIR -54 208 20 522 124 0 11 chr15 9384807 9384896 -76310858 + L1MB1 LINE L1 6078 6165 -3 4042 59 47 0 chr15 9384932 9385602 -76310152 + L1PA8A LINE L1 5144 5836 -295 267 31 0 0 chr15 9385972 9386004 -76309750 + (TG)n Simple_repeat Simple_repeat 2 33 0 560 119 0 0 chr15 9386149 9386233 -76309521 + AluS SINE Alu 1 84 -228 2336 82 3 3 chr15 9386271 9386575 -76309179 + AluY SINE Alu 1 304 -7 217 244 0 0 chr15 9387024 9387065 -76308689 + (TG)n Simple_repeat Simple_repeat 2 42 0 977 124 51 0 chr15 9387855 9388033 -76307721 + Tigger3(Golem) DNA MER2_type 2842 3028 -1 202 143 95 0 chr15 9388153 9388195 -76307559 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 456 351 56 56 chr15 9388244 9388529 -76307225 - L2 LINE L2 0 3272 2988 271 352 33 0 chr15 9388819 9388910 -76306844 - L2 LINE L2 -234 3079 2986 * 833 320 142 19 chr15 9388900 9389485 -76306269 - L2 LINE L2 -924 2390 1734 188 329 13 13 chr15 9389533 9389609 -76306145 + L3b LINE CR1 1420 1495 -88 2351 74 3 26 chr15 9390636 9390947 -76304807 - AluY SINE Alu -7 304 1 382 202 73 32 chr15 9391050 9391174 -76304580 - L1MC4a LINE L1 -1909 5899 5771 2173 110 13 0 chr15 9391312 9391613 -76304141 - AluSx SINE Alu -7 305 1 336 202 35 79 chr15 9392245 9392359 -76303395 - L2 LINE L2 -1 3271 3163 490 0 0 0 chr15 9392471 9392532 -76303222 - L1PA14 LINE L1 -1 6160 6100 1199 67 7 0 chr15 9392567 9392751 -76303003 + AluY SINE Alu 134 318 0 318 283 222 6 chr15 9393795 9393975 -76301779 + L2 LINE L2 2298 2516 -798 1414 159 71 0 chr15 9394041 9394280 -76301474 - AluJo SINE Alu -13 299 44 317 346 110 2 chr15 9394447 9394675 -76301079 + L2 LINE L2 2715 2970 -302 369 340 54 14 chr15 9394695 9394842 -76300912 + MIR SINE MIR 110 262 0 427 235 38 8 chr15 9394989 9395121 -76300633 + MER104 DNA Tc2 31 166 -14 821 179 31 131 chr15 9395618 9395976 -76299778 - MER33 DNA MER1_type -1 323 2 2462 83 0 3 chr15 9396287 9396601 -76299153 + AluSq SINE Alu 1 313 0 204 351 0 0 chr15 9396683 9396740 -76299014 + L2 LINE L2 3202 3258 -14 273 57 0 0 chr15 9396814 9396849 -76298905 + (A)n Simple_repeat Simple_repeat 1 35 0 588 224 40 0 chr15 9396849 9396974 -76298780 - MER5B DNA MER1_type -48 130 1 314 186 14 14 chr15 9398793 9398863 -76296891 - L2 LINE L2 -12 3260 3191 223 268 118 81 chr15 9400601 9400847 -76294907 - L2 LINE L2 -726 2588 2334 1271 202 49 22 chr15 9401411 9401678 -76294076 + AluJo SINE Alu 1 274 -38 239 91 0 23 chr15 9401686 9401730 -76294024 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 668 188 28 6 chr15 9401758 9401934 -76293820 + GA-rich Low_complexity Low_complexity 1 180 0 1585 194 0 7 chr15 9402027 9402311 -76293443 + AluJb SINE Alu 1 282 -30 349 232 123 36 chr15 9403130 9403268 -76292486 + MIR SINE MIR 113 262 0 2272 33 33 4 chr15 9404818 9405125 -76290629 + AluY SINE Alu 1 315 0 462 264 56 8 chr15 9405127 9405252 -76290502 - L2 LINE L2 -3 3310 3180 1821 189 17 44 chr15 9406489 9406948 -76288806 + L1MB8 LINE L1 5723 6169 -9 2270 91 3 0 chr15 9407212 9407528 -76288226 + AluSp SINE Alu 1 317 0 1454 68 0 0 chr15 9407707 9407898 -76287856 + L1PA5 LINE L1 5964 6154 0 430 336 96 29 chr15 9408271 9408762 -76286992 + L2 LINE L2 1754 2277 -1037 422 300 140 42 chr15 9408765 9409167 -76286587 + L2 LINE L2 2594 3085 -187 1920 71 64 21 chr15 9409167 9409448 -76286306 - AluY SINE Alu -18 293 1 422 300 140 42 chr15 9409448 9409657 -76286097 + L2 LINE L2 3085 3272 0 612 261 0 0 chr15 9409740 9409882 -76285872 + Tigger3(Golem) DNA MER2_type 1 142 -2887 429 83 0 0 chr15 9409890 9409950 -76285804 + Tigger3(Golem) DNA MER2_type 2802 2861 -168 402 314 40 105 chr15 9410598 9410968 -76284786 - L1ME4a LINE L1 -224 5897 5552 183 337 58 12 chr15 9411415 9411501 -76284253 - L2 LINE L2 -960 2354 2265 2231 101 0 19 chr15 9413231 9413547 -76282207 - AluSg SINE Alu 0 310 1 282 256 103 0 chr15 9414459 9414537 -76281217 - MIR SINE MIR -170 92 7 188 277 0 46 chr15 9414701 9414766 -76280988 - MIR SINE MIR -181 81 20 997 240 27 15 chr15 9415570 9415872 -76279882 + L1MD3 LINE L1 6123 6344 0 2130 133 0 3 chr15 9416230 9416530 -76279224 + AluSx SINE Alu 1 299 -13 300 273 227 25 chr15 9416795 9417037 -76278717 - L3 LINE CR1 -6 1571 1281 646 317 182 14 chr15 9417102 9417841 -76277913 - L2 LINE L2 0 3313 2426 335 244 115 13 chr15 9417858 9418006 -76277748 - MIR SINE MIR -63 145 32 1462 280 118 37 chr15 9419097 9420108 -76275646 - HAL1 LINE L1 -7 2500 1408 429 282 141 5 chr15 9420525 9420731 -76275023 - HAL1 LINE L1 -2253 254 21 646 179 0 0 chr15 9421747 9421859 -76273895 - MER97b DNA MER1_type? -874 179 68 544 202 101 0 chr15 9421859 9422027 -76273727 - MER53 DNA DNA -4 185 1 1949 158 0 22 chr15 9422455 9422766 -76272988 + AluJo SINE Alu 9 312 0 340 214 97 45 chr15 9423008 9423162 -76272592 + MER103 DNA DNA 2 163 -3 192 97 0 0 chr15 9423344 9423375 -76272379 + (TG)n Simple_repeat Simple_repeat 2 32 0 2237 162 52 44 chr15 9423421 9423922 -76271832 - MLT1D LTR MaLR 0 505 1 230 178 22 0 chr15 9424307 9424352 -76271402 - MIR SINE MIR -92 170 125 382 343 66 11 chr15 9424730 9424911 -76270843 + MIR SINE MIR 22 212 -50 21 0 0 0 chr15 9425105 9425126 -76270628 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 141 0 chr15 9427057 9427156 -76268598 + MIR SINE MIR 66 178 -84 1682 143 19 4 chr15 9428161 9428419 -76267335 - AluJb SINE Alu -10 302 41 297 264 142 26 chr15 9428748 9429038 -76266716 + L2 LINE L2 2776 3090 -182 8046 174 25 15 chr15 9429083 9430561 -76265193 - L1PB1 LINE L1 -3 6148 4686 2056 86 47 0 chr15 9430561 9430840 -76264914 - AluY SINE Alu -19 292 1 8046 174 25 15 chr15 9430840 9431087 -76264667 - L1PB1 LINE L1 -1465 4686 4443 198 103 0 0 chr15 9431087 9431116 -76264638 + (TA)n Simple_repeat Simple_repeat 1 29 0 8046 174 25 15 chr15 9431116 9432148 -76263606 - L1PB1 LINE L1 -1708 4443 3371 251 292 56 14 chr15 9432168 9432240 -76263514 + L2 LINE L2 3121 3195 -77 2205 100 13 17 chr15 9433509 9433809 -76261945 + AluSx SINE Alu 1 299 -13 385 262 132 32 chr15 9434023 9434393 -76261361 - L1ME4a LINE L1 -1 6120 5714 529 151 0 11 chr15 9434520 9434613 -76261141 + U13 snRNA snRNA 13 104 0 285 284 0 0 chr15 9434615 9434689 -76261065 + A-rich Low_complexity Low_complexity 1 74 0 251 360 93 0 chr15 9434698 9434784 -76260970 - MER91A DNA MER1_type -10 186 93 353 270 135 44 chr15 9435443 9435695 -76260059 - L1ME4a LINE L1 -1278 4868 4594 3687 161 54 32 chr15 9435761 9436594 -76259160 - L1MB1 LINE L1 -22 6146 5296 213 209 0 0 chr15 9437977 9438020 -76257734 + MIR SINE MIR 98 140 -68 2217 101 0 0 chr15 9440181 9440497 -76255257 + AluSq SINE Alu 1 316 0 214 317 0 0 chr15 9441000 9441060 -76254694 + CT-rich Low_complexity Low_complexity 1 60 0 184 341 91 28 chr15 9443703 9443879 -76251875 - L2 LINE L2 -568 2746 2560 1599 226 12 6 chr15 9445528 9445864 -76249890 + MER58B DNA MER1_type 2 339 -2 3023 95 91 34 chr15 9446369 9446865 -76248889 - MER1A DNA MER1_type 0 527 4 189 132 0 0 chr15 9447896 9447934 -76247820 + (A)n Simple_repeat Simple_repeat 1 38 0 617 225 95 18 chr15 9447972 9448141 -76247613 + MER5A DNA MER1_type 8 189 0 329 296 55 45 chr15 9449166 9449365 -76246389 - MIR SINE MIR -58 204 4 649 290 190 16 chr15 9451694 9452015 -76243739 - L2 LINE L2 0 3313 2937 242 301 181 30 chr15 9452089 9452255 -76243499 + MIR SINE MIR 72 262 0 254 342 61 30 chr15 9452602 9452865 -76242889 + L2 LINE L2 2659 2929 -385 182 313 90 75 chr15 9453012 9453146 -76242608 + L2 LINE L2 3124 3259 -13 431 215 185 31 chr15 9456805 9456935 -76238819 - MIR SINE MIR -2 260 111 1264 253 132 17 chr15 9458263 9458855 -76236899 + Charlie7 DNA MER1_type 64 723 -1889 283 225 123 22 chr15 9458872 9459010 -76236744 + Charlie7 DNA MER1_type 2458 2609 -3 26 0 0 0 chr15 9459353 9459379 -76236375 + AT_rich Low_complexity Low_complexity 1 26 0 248 399 51 33 chr15 9459849 9460278 -76235476 + L2 LINE L2 2243 2679 -635 * 692 276 121 76 chr15 9460263 9460726 -76235028 - L2 LINE L2 -1 3312 2829 1749 137 29 14 chr15 9460981 9461258 -76234496 - AluSx SINE Alu -8 304 24 2143 125 20 0 chr15 9463954 9464259 -76231495 + AluSp SINE Alu 2 312 -1 1190 223 94 26 chr15 9464490 9464956 -76230798 + L1MC5 LINE L1 7085 7582 -379 892 153 0 0 chr15 9465094 9465231 -76230523 + FLAM_C SINE Alu 1 137 -6 270 251 113 31 chr15 9465234 9465429 -76230325 + L1MC5 LINE L1 7703 7913 -48 294 342 68 6 chr15 9466016 9466112 -76229642 + MIR SINE MIR 62 173 -89 1576 188 10 50 chr15 9466112 9466415 -76229339 - AluJb SINE Alu -21 291 1 294 342 68 6 chr15 9466415 9466479 -76229275 + MIR SINE MIR 173 232 -30 23 24 0 24 chr15 9466569 9466588 -76229166 + AT_rich Low_complexity Low_complexity 1 19 -21 1462 204 17 24 chr15 9466588 9466877 -76228877 - AluJo SINE Alu -25 287 1 23 24 0 24 chr15 9466877 9466898 -76228856 + AT_rich Low_complexity Low_complexity 19 40 0 330 302 10 10 chr15 9467779 9467875 -76227879 - L2 LINE L2 0 3313 3218 4077 206 44 38 chr15 9468749 9469300 -76226454 - L1MB1 LINE L1 -6 5986 5440 2319 95 7 0 chr15 9469300 9469606 -76226148 - AluY SINE Alu -3 308 1 4077 206 44 38 chr15 9469606 9471436 -76224318 - L1MB1 LINE L1 -552 5440 3622 2069 101 0 7 chr15 9471436 9471712 -76224042 + AluSx SINE Alu 1 274 -38 4077 206 44 38 chr15 9471712 9473906 -76221848 - L1MB1 LINE L1 -2370 3622 1300 2191 123 0 25 chr15 9473909 9474226 -76221528 - AluSx SINE Alu -3 309 1 815 130 8 0 chr15 9474235 9474358 -76221396 - AluSg/x SINE Alu -5 307 184 429 282 141 5 chr15 9474587 9474793 -76220961 - HAL1 LINE L1 -2253 254 21 1208 132 0 6 chr15 9475627 9475801 -76219953 - AluSg SINE Alu -137 173 1 1225 283 47 0 chr15 9475810 9476280 -76219474 - L1MB1 LINE L1 -4706 1185 694 404 222 17 22 chr15 9476488 9476668 -76219086 + GA-rich Low_complexity Low_complexity 2 180 0 1108 301 89 52 chr15 9476782 9477430 -76218324 - L1MB1 LINE L1 -5217 674 3 1972 131 0 10 chr15 9478118 9478409 -76217345 + AluSx SINE Alu 1 288 -24 372 22 0 0 chr15 9480264 9480309 -76215445 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 158 22 0 chr15 9480838 9480977 -76214777 + LTR25 LTR ERV1 1 142 -652 439 240 73 45 chr15 9481516 9481695 -76214059 - L3b LINE CR1 -159 1424 1241 903 202 146 38 chr15 9482848 9483061 -76212693 + MER46A DNA MER2_type 1 236 0 564 204 19 19 chr15 9484802 9484956 -76210798 + MLT1C LTR MaLR 347 467 0 257 233 50 0 chr15 9484968 9485028 -76210726 - MER5A DNA MER1_type -118 71 9 1316 265 145 38 chr15 9486774 9488696 -76207058 - L1M4 LINE L1 -844 5302 3174 336 203 13 0 chr15 9488732 9488811 -76206943 + MER116 DNA Mariner 1 80 0 5741 114 15 10 chr15 9489061 9489813 -76205941 + L1PA13 LINE L1 4637 5384 -779 903 121 0 0 chr15 9489813 9489953 -76205801 + (TA)n Simple_repeat Simple_repeat 2 141 0 5741 114 15 10 chr15 9489953 9490722 -76205032 + L1PA13 LINE L1 5384 6159 -4 348 64 0 0 chr15 9491297 9491344 -76204410 + (CA)n Simple_repeat Simple_repeat 2 48 0 410 245 37 86 chr15 9491535 9491698 -76204056 - MIR SINE MIR -31 231 77 377 388 7 0 chr15 9494332 9494484 -76201270 - MIR3 SINE MIR -37 171 19 1782 109 102 18 chr15 9494596 9494871 -76200883 + AluSx SINE Alu 1 298 -14 495 308 42 0 chr15 9494901 9495044 -76200710 + MIR SINE MIR 65 213 -49 321 155 0 0 chr15 9495668 9495726 -76200028 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr15 9496233 9496255 -76199499 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr15 9497168 9497198 -76198556 + (T)n Simple_repeat Simple_repeat 1 30 0 198 310 92 0 chr15 9497613 9497700 -76198054 - MIR SINE MIR -71 191 97 30 69 0 0 chr15 9497864 9497922 -76197832 + AT_rich Low_complexity Low_complexity 1 58 0 297 320 52 0 chr15 9498289 9498386 -76197368 + MIR3 SINE MIR 97 198 -10 378 0 0 0 chr15 9498422 9498464 -76197290 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2258 112 0 3 chr15 9498632 9498936 -76196818 + AluSq SINE Alu 1 303 -10 748 147 177 20 chr15 9500094 9500292 -76195462 - MSTA LTR MaLR -190 238 10 2328 101 3 3 chr15 9500586 9500892 -76194862 + AluSx SINE Alu 1 306 -6 2254 104 0 0 chr15 9501009 9501306 -76194448 - AluSq SINE Alu -16 297 1 409 272 22 100 chr15 9501524 9501755 -76193999 - MIR SINE MIR -12 250 30 221 277 18 54 chr15 9501801 9501913 -76193841 + L2 LINE L2 3005 3112 -201 239 54 27 0 chr15 9501978 9502015 -76193739 + (TTA)n Simple_repeat Simple_repeat 2 39 0 415 215 13 0 chr15 9502046 9502125 -76193629 + MER3 DNA MER1_type 1 80 -129 7701 18 2 2 chr15 9502144 9503375 -76192379 + L1PA3 LINE L1 4921 6151 -4 226 179 298 0 chr15 9503396 9503480 -76192274 + MER3 DNA MER1_type 101 209 0 251 237 34 17 chr15 9503480 9503539 -76192215 + L2 LINE L2 3254 3313 0 22 0 0 0 chr15 9503592 9503614 -76192140 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr15 9503796 9503820 -76191934 + (CA)n Simple_repeat Simple_repeat 1 24 0 297 0 0 0 chr15 9503889 9503922 -76191832 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 118 0 7 chr15 9504988 9505277 -76190477 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr15 9508785 9508807 -76186947 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 222 213 0 0 chr15 9508826 9508873 -76186881 + (TGG)n Simple_repeat Simple_repeat 2 48 0 241 276 35 35 chr15 9510258 9510345 -76185409 + L2 LINE L2 3137 3223 -49 511 350 40 5 chr15 9510882 9511105 -76184649 + MIR SINE MIR 22 252 -10 374 263 53 59 chr15 9511871 9512023 -76183731 + MIR SINE MIR 91 241 -21 422 320 164 34 chr15 9512196 9512881 -76182873 + L2 LINE L2 1732 2505 -809 265 243 110 37 chr15 9513109 9513245 -76182509 + L2 LINE L2 2829 2974 -298 573 283 23 12 chr15 9514407 9514580 -76181174 - MER5B DNA MER1_type -1 177 3 184 405 51 0 chr15 9516829 9516908 -76178846 - MIR SINE MIR -160 102 20 301 300 36 9 chr15 9517013 9517123 -76178631 - MIR SINE MIR -56 206 94 319 357 53 29 chr15 9517342 9517513 -76178241 + MIR3 SINE MIR 17 191 -17 2136 106 20 0 chr15 9517733 9518026 -76177728 - AluSc SINE Alu -10 299 1 21 36 0 0 chr15 9518247 9518275 -76177479 + AT_rich Low_complexity Low_complexity 1 28 0 2414 91 0 3 chr15 9519147 9519456 -76176298 + AluY SINE Alu 2 309 -2 1625 141 20 12 chr15 9520640 9520895 -76174859 + AluSx SINE Alu 35 291 -21 2049 71 0 87 chr15 9521082 9521418 -76174336 + AluY SINE Alu 1 309 0 180 0 0 0 chr15 9521418 9521438 -76174316 + (TTA)n Simple_repeat Simple_repeat 1 20 0 267 224 30 0 chr15 9521519 9521586 -76174168 + L1ME1 LINE L1 5044 5112 -1034 506 158 40 0 chr15 9521627 9521728 -76174026 + L1MA7 LINE L1 6182 6286 -5 1637 209 11 76 chr15 9521819 9522369 -76173385 + L1ME1 LINE L1 5204 5721 -445 1561 249 14 45 chr15 9522369 9522856 -76172898 + MLT2B1 LTR ERVL 1 472 -48 261 170 0 0 chr15 9522914 9522961 -76172793 + MLT2D LTR ERVL 368 414 0 1357 271 25 9 chr15 9522963 9523403 -76172351 + L1ME1 LINE L1 5719 6165 -1 242 180 148 0 chr15 9524300 9524361 -76171393 + MIR SINE MIR 95 164 -98 204 40 0 0 chr15 9524851 9524876 -76170878 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr15 9526409 9526438 -76169316 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr15 9527922 9527951 -76167803 + (T)n Simple_repeat Simple_repeat 1 29 0 195 311 22 22 chr15 9529464 9529554 -76166200 - L2 LINE L2 -505 2809 2720 272 327 83 48 chr15 9529580 9529748 -76166006 - L2 LINE L2 -701 2613 2440 205 379 133 10 chr15 9529927 9530236 -76165518 - L2 LINE L2 -961 2353 2007 2336 111 30 16 chr15 9530519 9530889 -76164865 - THE1C LTR MaLR 0 375 1 291 234 26 0 chr15 9533084 9533161 -76162593 - MER116 DNA Mariner 0 80 2 183 239 0 0 chr15 9533486 9533532 -76162222 - L2 LINE L2 0 3313 3268 420 326 26 70 chr15 9533665 9533935 -76161819 + L2 LINE L2 2577 2834 -480 189 0 0 0 chr15 9534085 9534106 -76161648 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr15 9534105 9534138 -76161616 + (CA)n Simple_repeat Simple_repeat 1 33 0 508 289 83 72 chr15 9534208 9534568 -76161186 + L2 LINE L2 2907 3270 -2 303 250 11 34 chr15 9535375 9535463 -76160291 + MIR SINE MIR 176 261 -1 453 292 35 14 chr15 9536059 9536203 -76159551 - MIR SINE MIR -109 153 7 187 219 0 24 chr15 9536481 9536522 -76159232 + MIR SINE MIR 223 262 0 231 330 22 22 chr15 9537334 9537425 -76158329 + MIR SINE MIR 34 124 -84 251 277 0 15 chr15 9537697 9537762 -76157992 + GA-rich Low_complexity Low_complexity 5 68 0 238 286 57 0 chr15 9537868 9537938 -76157816 - Charlie8 DNA MER1_type 0 2417 2344 262 355 51 7 chr15 9538303 9538441 -76157313 - MIR3 SINE MIR -9 199 56 2388 86 0 0 chr15 9540040 9540342 -76155412 + AluYa5 SINE Alu 1 302 -9 663 172 8 39 chr15 9540367 9540495 -76155259 + AluJb SINE Alu 1 124 -188 2126 147 0 0 chr15 9540873 9541172 -76154582 + AluSq SINE Alu 1 299 -14 276 113 0 56 chr15 9541411 9541482 -76154272 + (TCC)n Simple_repeat Simple_repeat 2 68 0 326 105 0 18 chr15 9541544 9541601 -76154153 + (TCC)n Simple_repeat Simple_repeat 2 57 0 283 200 0 0 chr15 9541601 9541656 -76154098 - Alu SINE Alu -11 291 237 566 304 32 16 chr15 9542444 9542697 -76153057 - Charlie8 DNA MER1_type -2128 289 33 12513 33 7 6 chr15 9542775 9545079 -76150675 + L1PA4 LINE L1 3828 6155 0 232 304 114 0 chr15 9545414 9545493 -76150261 + MIR SINE MIR 164 251 -11 5184 133 28 44 chr15 9546013 9547081 -76148673 + L1MA8 LINE L1 5237 6287 -4 1036 303 65 35 chr15 9549007 9549439 -76146315 + L2 LINE L2 2497 2941 -373 775 209 29 17 chr15 9549452 9549624 -76146130 - MIR SINE MIR 0 262 89 1054 204 20 95 chr15 9549631 9549757 -76145997 + L1ME1 LINE L1 5716 5850 -316 1977 109 19 0 chr15 9549757 9550023 -76145731 - AluSq SINE Alu -9 304 34 1054 204 20 95 chr15 9550023 9550297 -76145457 + L1ME1 LINE L1 5850 6089 -77 278 292 77 73 chr15 9550379 9551737 -76144017 + L1ME LINE L1 4060 5417 -747 357 311 42 30 chr15 9551742 9551909 -76143845 + L1ME LINE L1 5478 5646 -516 229 368 0 0 chr15 9552654 9552760 -76142994 + (TGG)n Simple_repeat Simple_repeat 3 108 0 549 268 61 53 chr15 9554793 9555021 -76140733 - MIR SINE MIR -10 252 23 676 243 112 0 chr15 9555780 9555949 -76139805 + MER5A DNA MER1_type 2 189 0 22 70 0 0 chr15 9555986 9556029 -76139725 + AT_rich Low_complexity Low_complexity 1 43 0 1246 199 68 61 chr15 9556577 9556973 -76138781 + LTR52 LTR ERVL 8 406 -15 1363 181 99 11 chr15 9557013 9557366 -76138388 + L1MC2 LINE L1 5961 6344 0 710 141 0 94 chr15 9557612 9557655 -76138099 + MLT1A1 LTR MaLR 2 47 -318 2255 109 0 0 chr15 9557655 9557957 -76137797 + AluSx SINE Alu 1 302 -10 710 141 0 94 chr15 9557957 9558062 -76137692 + MLT1A1 LTR MaLR 47 136 -229 2232 205 50 5 chr15 9558064 9558508 -76137246 + MER21B LTR ERV1 1 464 -399 4034 111 79 91 chr15 9558515 9559901 -76135853 - pTR5 LTR ERV1 0 2438 743 1228 201 19 30 chr15 9559902 9560170 -76135584 + MER21A LTR ERV1 550 814 -117 2086 107 34 0 chr15 9560238 9560529 -76135225 + AluSq SINE Alu 1 301 -12 245 288 88 12 chr15 9560558 9560638 -76135116 - L2 LINE L2 -18 3254 3169 287 243 112 86 chr15 9560787 9561055 -76134699 + MLT1I LTR MaLR 21 295 -114 797 126 144 29 chr15 9561879 9562053 -76133701 + MER2 DNA MER2_type 2 195 -150 296 308 13 0 chr15 9562079 9562157 -76133597 + MER2 DNA MER2_type 267 345 0 787 160 0 80 chr15 9562775 9562950 -76132804 + FRAM SINE Alu 4 164 -2 724 277 73 40 chr15 9563841 9564105 -76131649 + L1ME3 LINE L1 5201 5455 -707 2591 61 0 6 chr15 9564105 9564418 -76131336 - AluY SINE Alu 0 311 1 724 277 73 40 chr15 9564418 9564850 -76130904 + L1ME3 LINE L1 5455 5909 -253 327 317 114 72 chr15 9565424 9565897 -76129857 + L1M4 LINE L1 3729 4221 -1925 339 25 0 0 chr15 9565966 9566006 -76129748 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr15 9566283 9566312 -76129442 + (CA)n Simple_repeat Simple_repeat 1 29 0 484 186 167 19 chr15 9567141 9567297 -76128457 + MER53 DNA DNA 11 189 0 780 276 11 0 chr15 9567941 9568115 -76127639 - MER5B DNA MER1_type 0 178 3 279 71 0 0 chr15 9568387 9568429 -76127325 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 191 294 15 59 chr15 9568953 9569021 -76126733 - L3b LINE CR1 -2 1581 1517 2321 86 0 3 chr15 9569748 9570050 -76125704 + AluY SINE Alu 1 301 -10 574 217 20 124 chr15 9570466 9570496 -76125258 - MIR SINE MIR -34 228 196 360 244 98 18 chr15 9570496 9570660 -76125094 - MER104 DNA MER2_type 0 180 4 574 217 20 124 chr15 9570660 9570698 -76125056 - MIR SINE MIR -66 196 156 1724 61 0 22 chr15 9570698 9570926 -76124828 - L1PA7 LINE L1 -3 6151 5929 574 217 20 124 chr15 9570926 9571105 -76124649 - MIR SINE MIR -106 156 6 216 329 13 0 chr15 9571922 9572001 -76123753 - MIR SINE MIR -2 260 181 312 301 78 20 chr15 9572162 9572315 -76123439 + L1ME LINE L1 5658 5819 -302 351 203 0 14 chr15 9572384 9572458 -76123296 - Tigger5 DNA MER2_type 0 2323 2251 270 170 0 19 chr15 9572428 9572481 -76123273 - Tigger5 DNA MER2_type -2270 53 2 * 728 284 36 4 chr15 9572626 9572851 -76122903 + MIR SINE MIR 2 233 -29 2464 73 0 0 chr15 9572900 9573202 -76122552 - AluY SINE Alu -9 302 1 3379 245 106 45 chr15 9573203 9574189 -76121565 + L2 LINE L2 1364 2457 -857 1669 150 4 26 chr15 9574189 9574462 -76121292 + AluJo SINE Alu 29 295 -17 3379 245 106 45 chr15 9574462 9574839 -76120915 + L2 LINE L2 2457 2810 -504 1302 221 129 18 chr15 9574839 9575282 -76120472 - Charlie4a DNA MER1_type 0 508 17 768 266 101 59 chr15 9575343 9575627 -76120127 + L2 LINE L2 2872 3181 -132 2123 171 58 24 chr15 9575627 9576041 -76119713 + MSTC LTR MaLR 1 428 0 768 266 101 59 chr15 9576041 9576180 -76119574 + L2 LINE L2 3181 3313 0 507 289 37 74 chr15 9576416 9576658 -76119096 + MIR SINE MIR 8 240 -22 21 0 0 0 chr15 9576784 9576805 -76118949 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 9576985 9577016 -76118738 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 0 0 chr15 9577581 9577625 -76118129 - MER5A DNA MER1_type -111 78 35 992 263 76 30 chr15 9577651 9577816 -76117938 - Charlie2 DNA MER1_type 0 2862 2706 1976 135 10 16 chr15 9577816 9578127 -76117627 + AluSx SINE Alu 1 309 -3 992 263 76 30 chr15 9578127 9578486 -76117268 - Charlie2 DNA MER1_type -156 2706 2314 310 255 47 9 chr15 9578537 9578643 -76117111 - Charlie2 DNA MER1_type -2443 339 230 276 274 0 32 chr15 9578687 9578782 -76116972 - Charlie2 DNA MER1_type -2657 125 34 237 211 35 18 chr15 9578828 9578885 -76116869 + MER5A DNA MER1_type 49 106 -83 286 327 91 14 chr15 9579708 9579928 -76115826 + L2 LINE L2 2589 2825 -489 221 288 41 41 chr15 9580317 9580390 -76115364 + L2 LINE L2 3239 3311 -2 468 280 163 47 chr15 9580895 9581281 -76114473 + L1M4 LINE L1 3730 4160 -1986 1201 162 51 0 chr15 9581407 9581641 -76114113 + L1MB2 LINE L1 5308 5553 -630 652 176 94 18 chr15 9581641 9581811 -76113943 + L1MB2 LINE L1 5987 6169 -2 294 115 0 0 chr15 9581819 9581871 -76113883 + L1MB4 LINE L1 6128 6179 -1 325 254 113 11 chr15 9581891 9582068 -76113686 + L1M4 LINE L1 4215 4409 -1737 263 281 68 25 chr15 9582147 9582382 -76113372 + L1M4 LINE L1 4518 4762 -1384 361 328 16 16 chr15 9582677 9582799 -76112955 - MIR SINE MIR -139 123 2 843 211 91 15 chr15 9582881 9583080 -76112674 + Tigger5 DNA MER2_type 1 214 -2109 1961 179 36 8 chr15 9583080 9583472 -76112282 + MER57A LTR ERV1 1 403 0 2877 151 26 18 chr15 9583472 9583534 -76112220 + MER57A-int LTR ERV1 1 61 -7476 5112 208 60 83 chr15 9583534 9585330 -76110424 + MER52A LTR ERV1 1 1753 -2 2877 151 26 18 chr15 9585330 9585769 -76109985 + MER57A-int LTR ERV1 61 506 -7031 356 146 0 10 chr15 9585770 9585840 -76109914 - AluS SINE Alu -242 60 7 26 82 0 0 chr15 9585929 9585990 -76109764 + AT_rich Low_complexity Low_complexity 1 61 0 3919 141 53 9 chr15 9586061 9586977 -76108777 + MER57A-int LTR ERV1 494 1451 -4495 2144 168 38 2 chr15 9586968 9587366 -76108388 + MER57A-int LTR ERV1 2218 2629 -4908 * 1178 151 0 10 chr15 9587358 9587557 -76108197 + MER57A-int LTR ERV1 2777 2973 -4564 * 3650 133 31 69 chr15 9587557 9588449 -76107305 + MER57A-int LTR ERV1 2533 3485 -2778 2039 125 58 58 chr15 9588449 9588810 -76106944 - THE1B LTR MaLR -3 361 1 3650 133 31 69 chr15 9588810 9588983 -76106771 + MER57A-int LTR ERV1 3485 3663 -2600 531 83 0 0 chr15 9589025 9589097 -76106657 + MER57A-int LTR ERV1 7078 7149 -388 658 123 23 31 chr15 9589097 9589227 -76106527 + LTR54B LTR ERV1 3 131 -367 1245 74 157 26 chr15 9589227 9589456 -76106298 + MER57A-int LTR ERV1 7279 7537 0 2162 182 8 2 chr15 9589456 9589857 -76105897 + MER57A LTR ERV1 1 403 0 1515 135 39 0 chr15 9589859 9590119 -76105635 + Tigger5 DNA MER2_type 2054 2323 0 260 280 70 10 chr15 9590275 9590475 -76105279 + L1MC4a LINE L1 5264 5475 -2333 297 260 116 62 chr15 9590568 9590860 -76104894 + L1MC4a LINE L1 5617 5924 -1884 224 294 20 0 chr15 9591213 9591264 -76104490 + MIR SINE MIR 19 70 -138 3948 132 22 12 chr15 9591265 9591941 -76103813 + MER50 LTR ERV1 1 683 -51 308 243 54 14 chr15 9591971 9592045 -76103709 + MIR3 SINE MIR 108 184 -24 25 0 0 0 chr15 9592132 9592157 -76103597 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr15 9592417 9592443 -76103311 + (CAATT)n Simple_repeat Simple_repeat 1 26 0 2475 186 9 23 chr15 9592493 9593064 -76102690 + LTR27 LTR ERV1 3 627 -141 1653 197 6 24 chr15 9593068 9593398 -76102356 + LTR28 LTR ERV1 697 1020 0 496 246 71 58 chr15 9593398 9593622 -76102132 - MER21B LTR ERV1 -215 648 422 210 175 0 25 chr15 9593744 9593784 -76101970 + T-rich Low_complexity Low_complexity 5 43 0 838 229 18 31 chr15 9593784 9594007 -76101747 - MER21B LTR ERV1 -546 317 98 463 177 0 0 chr15 9594059 9594138 -76101616 - MER21B LTR ERV1 -773 90 12 2736 108 66 38 chr15 9594811 9595312 -76100442 + MER4B LTR ERV1 1 515 -95 304 143 26 52 chr15 9595324 9595401 -76100353 + L1ME3A LINE L1 4753 4827 -1319 23 33 0 0 chr15 9595547 9595577 -76100177 + AT_rich Low_complexity Low_complexity 1 30 0 2360 243 88 38 chr15 9595733 9596143 -76099611 + L1ME3A LINE L1 5259 5647 -523 2410 153 8 2 chr15 9596143 9596542 -76099212 - MER57A LTR ERV1 -2 401 1 2360 243 88 38 chr15 9596542 9596766 -76098988 + L1ME3A LINE L1 5647 5858 -312 1963 132 7 7 chr15 9596766 9597055 -76098699 + AluSx SINE Alu 1 289 -23 2360 243 88 38 chr15 9597055 9597280 -76098474 + L1ME3A LINE L1 5858 6162 -8 333 312 123 13 chr15 9597319 9597473 -76098281 - MIR SINE MIR -55 207 37 231 256 8 34 chr15 9597854 9597971 -76097783 + (TGG)n Simple_repeat Simple_repeat 1 114 0 3854 166 12 15 chr15 9598632 9599384 -76096370 - L1MA7 LINE L1 -4 6287 5538 266 217 58 0 chr15 9599597 9599666 -76096088 + MIR3 SINE MIR 130 202 -6 192 163 0 0 chr15 9601290 9601333 -76094421 + (TA)n Simple_repeat Simple_repeat 2 44 0 334 259 54 18 chr15 9602019 9602131 -76093623 + L1ME LINE L1 5571 5686 -435 2358 62 0 3 chr15 9602211 9602500 -76093254 + AluY SINE Alu 1 288 -23 858 287 79 24 chr15 9602989 9603483 -76092271 + LTR33 LTR ERVL 1 521 0 24 0 0 0 chr15 9605201 9605225 -76090529 + AT_rich Low_complexity Low_complexity 1 24 0 562 281 118 6 chr15 9605737 9605915 -76089839 - MIR SINE MIR -49 213 16 2442 84 3 0 chr15 9609865 9610176 -76085578 - AluSp SINE Alu -1 312 1 325 233 92 25 chr15 9610503 9610623 -76085131 - MIR SINE MIR -65 197 70 808 274 24 28 chr15 9610625 9610873 -76084881 - MIR SINE MIR -3 259 13 185 0 40 0 chr15 9611024 9611049 -76084705 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr15 9611943 9611969 -76083785 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 761 239 58 40 chr15 9612058 9612284 -76083470 - MER8 DNA MER2_type -8 231 2 2227 116 3 3 chr15 9612512 9612815 -76082939 + AluSx SINE Alu 1 303 -9 1814 168 3 3 chr15 9613604 9613902 -76081852 - AluJb SINE Alu -14 298 1 206 333 0 14 chr15 9613910 9613979 -76081775 - MIR SINE MIR -60 148 81 378 269 63 29 chr15 9614577 9614605 -76081149 + MIR SINE MIR 2 28 -234 2388 92 0 16 chr15 9614605 9614922 -76080832 + AluSx SINE Alu 1 312 0 378 269 63 29 chr15 9614922 9615068 -76080686 + MIR SINE MIR 28 182 -80 1757 146 7 27 chr15 9616911 9617206 -76078548 - AluJb SINE Alu -23 289 1 30 0 0 0 chr15 9617211 9617241 -76078513 + AT_rich Low_complexity Low_complexity 1 30 0 2626 77 0 3 chr15 9617241 9617590 -76078164 - L1PA5 LINE L1 -5 6149 5802 1989 33 24 0 chr15 9617590 9617895 -76077859 + L1P2 LINE L1 5218 5527 -628 377 286 93 28 chr15 9617987 9618169 -76077585 + MIR SINE MIR 69 262 0 2096 122 0 3 chr15 9619213 9619507 -76076247 + AluSx SINE Alu 1 293 -19 230 177 0 81 chr15 9620279 9620341 -76075413 + LTR36 LTR ERV1 139 195 -416 976 119 8 0 chr15 9620344 9620478 -76075276 + AluSq/x SINE Alu 1 135 -177 2333 94 0 0 chr15 9620478 9620777 -76074977 + AluSp SINE Alu 1 299 -14 345 271 70 34 chr15 9620777 9621154 -76074600 + LTR38B LTR ERV1 209 603 -8 487 159 44 0 chr15 9621183 9621296 -76074458 - L1MA4 LINE L1 -4 6296 6179 321 313 16 28 chr15 9621323 9621505 -76074249 + LTR67 LTR ERVL 327 506 -51 345 24 0 0 chr15 9621895 9621937 -76073817 + (TG)n Simple_repeat Simple_repeat 2 43 0 1579 137 16 4 chr15 9621937 9621977 -76073777 - AluSx SINE Alu -28 284 246 342 0 0 0 chr15 9621977 9622015 -76073739 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 137 16 4 chr15 9622015 9622223 -76073531 - AluSx SINE Alu -66 246 33 273 194 9 74 chr15 9622704 9622812 -76072942 + MER53 DNA DNA 1 101 -88 * 415 117 0 53 chr15 9622723 9622817 -76072937 - MER53 DNA DNA -10 179 91 296 198 33 77 chr15 9622997 9623088 -76072666 + MER21B LTR ERV1 3 89 -774 1494 224 170 34 chr15 9623266 9623548 -76072206 + MER21B LTR ERV1 133 375 -488 3938 138 14 5 chr15 9623548 9624177 -76071577 + MER41B LTR ERV1 1 635 0 1494 224 170 34 chr15 9624177 9624483 -76071271 + MER21B LTR ERV1 375 801 -62 780 107 38 8 chr15 9624992 9625123 -76070631 - L1PB1 LINE L1 -1 6150 6016 310 156 28 18 chr15 9625379 9625488 -76070266 + (TA)n Simple_repeat Simple_repeat 1 110 0 290 229 66 93 chr15 9625527 9625812 -76069942 + L1ME4a LINE L1 5575 5854 -318 2336 100 0 7 chr15 9625849 9626159 -76069595 + AluY SINE Alu 1 308 -3 357 243 140 0 chr15 9626236 9626372 -76069382 + L1ME4a LINE L1 5965 6119 -2 2084 125 10 6 chr15 9627146 9627457 -76068297 + AluSx SINE Alu 1 312 0 1376 61 10 10 chr15 9627483 9627680 -76068074 + L1PB1 LINE L1 5596 5792 -359 318 180 0 0 chr15 9627680 9627741 -76068013 + (TA)n Simple_repeat Simple_repeat 2 62 0 2582 90 14 0 chr15 9627741 9628106 -76067648 + L1PB1 LINE L1 5782 6151 0 21 0 0 0 chr15 9628106 9628127 -76067627 + AT_rich Low_complexity Low_complexity 1 21 0 195 302 103 26 chr15 9629236 9629352 -76066402 + L2 LINE L2 3148 3272 0 799 288 91 5 chr15 9629464 9629683 -76066071 - MIR SINE MIR -19 243 6 493 250 72 7 chr15 9629740 9629892 -76065862 - MER103 DNA DNA -2 164 3 183 196 71 36 chr15 9630716 9630772 -76064982 - MIR SINE MIR -93 169 112 282 356 60 7 chr15 9633767 9633916 -76061838 - MIR3 SINE MIR -5 203 47 448 302 22 7 chr15 9633999 9634138 -76061616 + MIR SINE MIR 17 157 -105 2151 133 7 0 chr15 9634954 9635262 -76060492 + AluSx SINE Alu 1 310 -2 1395 193 95 8 chr15 9635297 9635561 -76060193 - AluJo SINE Alu -25 287 1 22 35 0 0 chr15 9635792 9635821 -76059933 + AT_rich Low_complexity Low_complexity 1 29 0 1529 154 44 50 chr15 9636492 9636790 -76058964 - AluJb SINE Alu -16 296 1 225 146 42 0 chr15 9636823 9636871 -76058883 - L1MDb LINE L1 -5033 1376 1327 1974 131 0 33 chr15 9636900 9637206 -76058548 + AluJb SINE Alu 1 296 -16 381 229 74 56 chr15 9637207 9637502 -76058252 + L1M4 LINE L1 1539 2007 -4818 1753 216 38 24 chr15 9637540 9638087 -76057667 + L1M4 LINE L1 2878 3432 -3212 691 291 56 35 chr15 9638176 9638571 -76057183 + HAL1 LINE L1 480 882 -1625 453 269 58 51 chr15 9638617 9638874 -76056880 + LTR33 LTR ERVL 212 470 -51 1802 124 0 78 chr15 9638877 9639184 -76056570 + AluJb SINE Alu 3 285 -27 1110 306 83 10 chr15 9639267 9639771 -76055983 - ERVL LTR ERVL -2901 2863 2323 629 318 29 4 chr15 9639775 9640014 -76055740 + ERVL LTR ERVL 4754 4998 -766 401 196 81 82 chr15 9640320 9640537 -76055217 + MER58B DNA MER1_type 1 341 0 298 229 90 133 chr15 9640538 9640839 -76054915 + L1ME4a LINE L1 5590 5877 -244 1133 95 73 6 chr15 9641250 9641429 -76054325 + MER30 DNA MER1_type 2 192 -38 295 364 41 26 chr15 9641625 9641820 -76053934 + L2 LINE L2 2715 2912 -402 268 293 0 27 chr15 9642388 9642463 -76053291 + CT-rich Low_complexity Low_complexity 4 76 0 271 281 75 69 chr15 9642846 9643006 -76052748 + L2 LINE L2 3151 3311 -2 874 244 57 18 chr15 9643116 9643345 -76052409 + MIR SINE MIR 23 260 -2 289 316 75 8 chr15 9645323 9645456 -76050298 + ERVL LTR ERVL 5176 5317 -447 303 71 0 0 chr15 9646166 9646208 -76049546 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 306 166 25 chr15 9646374 9646531 -76049223 + L2 LINE L2 1930 2108 -1206 659 175 169 42 chr15 9646538 9646727 -76049027 - MER20 DNA MER1_type -6 213 1 1677 287 123 13 chr15 9646727 9647634 -76048120 + L2 LINE L2 2110 3108 -205 21 0 0 0 chr15 9649060 9649081 -76046673 + AT_rich Low_complexity Low_complexity 1 21 0 3022 98 22 2 chr15 9649288 9649735 -76046019 + L1PA14 LINE L1 5706 6161 0 246 304 14 0 chr15 9649828 9649897 -76045857 + L2 LINE L2 3203 3272 0 414 331 77 17 chr15 9649944 9650231 -76045523 + L1ME4a LINE L1 5564 5867 -254 226 239 131 8 chr15 9650279 9650409 -76045345 + L1ME4a LINE L1 5964 6109 -12 21 0 0 0 chr15 9651102 9651123 -76044631 + AT_rich Low_complexity Low_complexity 1 21 0 3098 184 79 10 chr15 9651138 9651857 -76043897 + L1MB7 LINE L1 5416 6184 0 369 275 137 47 chr15 9651967 9652178 -76043576 + L1ME4a LINE L1 5669 5898 -223 23 0 0 0 chr15 9652178 9652201 -76043553 + AT_rich Low_complexity Low_complexity 1 23 0 240 292 135 22 chr15 9654927 9655112 -76040642 - L2 LINE L2 -2 3311 3106 231 36 0 0 chr15 9655377 9655405 -76040349 + (CA)n Simple_repeat Simple_repeat 1 28 0 1425 149 103 0 chr15 9656228 9656470 -76039284 + MER57A LTR ERV1 135 401 -2 206 299 175 26 chr15 9656677 9656831 -76038923 + MIR SINE MIR 86 262 0 350 299 31 67 chr15 9659818 9660012 -76035742 - MIR SINE MIR -45 217 31 2046 125 7 13 chr15 9661428 9661733 -76034021 - AluSc SINE Alu -6 303 1 483 222 170 0 chr15 9662791 9662944 -76032810 - MIR SINE MIR -6 256 78 288 303 243 7 chr15 9662949 9663233 -76032521 + L2 LINE L2 2409 2759 -555 630 311 106 9 chr15 9663675 9664167 -76031587 - MLT1K LTR MaLR -4 584 11 341 154 0 46 chr15 9664393 9664458 -76031296 - MER5B DNA MER1_type -108 70 9 336 258 195 32 chr15 9665047 9665237 -76030517 + MIR SINE MIR 41 261 -1 1054 121 7 0 chr15 9665464 9665604 -76030150 + AluSq/x SINE Alu 5 145 -168 213 250 15 44 chr15 9666952 9667020 -76028734 - L2 LINE L2 -22 3250 3185 210 296 21 7 chr15 9667822 9667910 -76027844 + GA-rich Low_complexity Low_complexity 2 144 0 2969 132 67 89 chr15 9668436 9669047 -76026707 - LTR12 LTR ERV1 -136 578 1 357 248 165 0 chr15 9669487 9669620 -76026134 - MIR SINE MIR -81 181 27 1994 96 0 116 chr15 9669690 9670034 -76025720 - AluY SINE Alu -7 304 1 344 262 105 5 chr15 9670278 9670488 -76025266 + L1ME4a LINE L1 5639 5869 -252 25 0 0 0 chr15 9670700 9670725 -76025029 + AT_rich Low_complexity Low_complexity 1 25 0 338 316 32 25 chr15 9670755 9670924 -76024830 + MIR SINE MIR 42 210 -52 2074 106 26 23 chr15 9670950 9671252 -76024502 + AluSx SINE Alu 1 303 -9 332 275 22 51 chr15 9673141 9673279 -76022475 + MIR3 SINE MIR 6 139 -69 344 301 116 14 chr15 9673351 9673497 -76022257 + MIR3 SINE MIR 5 165 -43 1749 165 34 3 chr15 9673854 9674151 -76021603 - AluJo SINE Alu -6 306 1 2264 112 0 0 chr15 9674622 9674917 -76020837 + AluSx SINE Alu 1 295 -17 475 225 7 106 chr15 9675785 9675936 -76019818 + L2 LINE L2 3173 3308 -5 2437 88 0 0 chr15 9676709 9677017 -76018737 + AluSx SINE Alu 2 309 -3 513 319 35 26 chr15 9677751 9677977 -76017777 + MIR SINE MIR 9 236 -26 2050 108 17 3 chr15 9679217 9679514 -76016240 + AluY SINE Alu 1 301 -10 27 29 0 0 chr15 9679906 9679940 -76015814 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr15 9680096 9680139 -76015615 + (CA)n Simple_repeat Simple_repeat 2 44 0 226 294 160 112 chr15 9680432 9680701 -76015053 - L2 LINE L2 -75 3197 2916 431 274 99 62 chr15 9680751 9681313 -76014441 - L1MC/D LINE L1 -743 5403 4887 457 481 18 53 chr15 9681360 9681697 -76014057 - LTR16A LTR ERVL -5 445 121 316 289 35 14 chr15 9681755 9681897 -76013857 - LTR16A1 LTR ERVL -312 145 1 591 297 179 14 chr15 9681961 9682396 -76013358 - L3 LINE CR1 -393 1184 678 252 355 47 9 chr15 9683335 9683442 -76012312 - L2 LINE L2 0 3272 3162 2512 58 0 7 chr15 9684291 9684599 -76011155 + AluY SINE Alu 1 306 -5 910 150 0 0 chr15 9685914 9686054 -76009700 - AluSg/x SINE Alu -14 296 157 2024 115 27 3 chr15 9686837 9687132 -76008622 + AluSg SINE Alu 9 310 0 24 32 0 0 chr15 9687289 9687320 -76008434 + AT_rich Low_complexity Low_complexity 1 31 0 635 268 134 29 chr15 9688333 9688646 -76007108 + LTR33 LTR ERVL 13 358 -163 703 264 25 15 chr15 9689303 9689500 -76006254 - L1MC/D LINE L1 -1997 5811 5613 708 363 31 35 chr15 9742454 9742936 -75952818 - L3 LINE CR1 -9 1568 1089 238 264 0 0 chr15 9743155 9743208 -75952546 - LTR67 LTR ERVL -15 542 490 351 123 71 42 chr15 9746944 9747046 -75948708 + FRAM/FAM SINE Alu 26 65 -101 2089 84 44 3 chr15 9748151 9748448 -75947306 - AluSg SINE Alu -1 309 1 39 38 0 0 chr15 9748731 9748784 -75946970 + AT_rich Low_complexity Low_complexity 1 53 0 1370 133 62 8 chr15 9748790 9749031 -75946723 + MER21A LTR ERV1 11 264 -667 2456 138 45 96 chr15 9749036 9749567 -75946187 + MER21A LTR ERV1 376 879 -52 1134 135 157 26 chr15 9749741 9749971 -75945783 - AluJo SINE Alu 0 312 53 1934 132 7 0 chr15 9750019 9750343 -75945411 + AluSx SINE Alu 1 326 0 300 341 99 2 chr15 9750961 9751123 -75944631 + MIR SINE MIR 38 213 -49 1658 177 0 13 chr15 9751126 9751431 -75944323 + AluJb SINE Alu 1 301 -11 186 225 25 0 chr15 9751591 9751631 -75944123 - MIR SINE MIR -126 136 96 2386 65 0 0 chr15 9753000 9753308 -75942446 + AluY SINE Alu 1 308 -3 234 246 0 29 chr15 9753656 9753725 -75942029 + L2 LINE L2 2998 3064 -208 285 254 0 0 chr15 9754724 9754787 -75940967 + L2 LINE L2 3246 3308 -5 2501 125 71 24 chr15 9755191 9755600 -75940154 + MSTA LTR MaLR 1 428 0 1925 117 0 0 chr15 9755888 9756137 -75939617 + AluSq SINE Alu 1 249 -64 1563 197 0 3 chr15 9756261 9756561 -75939193 + AluSx SINE Alu 10 308 -4 2328 73 21 0 chr15 9757974 9758289 -75937465 + AluSq SINE Alu 1 321 0 209 301 129 0 chr15 9758549 9758642 -75937112 + L3 LINE CR1 1404 1508 -69 881 143 52 45 chr15 9759360 9759514 -75936240 - AluJb SINE Alu -18 294 140 1019 94 0 0 chr15 9759798 9759926 -75935828 + AluSg SINE Alu 6 133 -177 2267 119 0 0 chr15 9759926 9760229 -75935525 + AluSg SINE Alu 1 303 -7 942 225 38 4 chr15 9760689 9760925 -75934829 - MIR SINE MIR -1 261 18 445 233 29 0 chr15 9761111 9761214 -75934540 + MIR SINE MIR 38 143 -119 2171 123 0 10 chr15 9761423 9761724 -75934030 + AluSq SINE Alu 1 298 -15 287 237 284 21 chr15 9762284 9762474 -75933280 + MIR SINE MIR 23 262 0 490 330 82 33 chr15 9763197 9763372 -75932382 - L2 LINE L2 -607 2707 2542 1765 167 26 16 chr15 9763372 9763678 -75932076 + AluSx SINE Alu 1 309 -3 490 330 82 33 chr15 9763678 9763987 -75931767 - L2 LINE L2 -772 2542 2199 1151 257 63 6 chr15 9765651 9765982 -75929772 + LTR33 LTR ERVL 5 354 -167 1034 58 0 0 chr15 9766104 9766225 -75929529 + AluY SINE Alu 1 121 -190 2208 114 0 3 chr15 9766937 9767236 -75928518 + AluSx SINE Alu 1 298 -14 239 261 0 11 chr15 9767375 9767467 -75928287 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 1505 182 56 7 chr15 9767481 9767767 -75927987 + AluJo SINE Alu 1 300 -12 363 309 109 9 chr15 9767797 9768041 -75927713 + L2 LINE L2 2784 3055 -217 2314 85 0 3 chr15 9768093 9768386 -75927368 - AluSx SINE Alu -15 297 6 313 215 87 74 chr15 9768469 9768618 -75927136 + L2 LINE L2 3163 3313 0 206 299 0 46 chr15 9770130 9770217 -75925537 - MIR SINE MIR -110 152 70 2454 81 0 0 chr15 9772079 9772375 -75923379 - AluY SINE Alu -15 296 1 205 254 29 22 chr15 9773515 9773599 -75922155 - MIR SINE MIR -62 146 90 415 175 58 19 chr15 9774351 9774454 -75921300 - MIR SINE MIR -67 141 35 2250 91 0 24 chr15 9774916 9775212 -75920542 - AluSg SINE Alu -21 289 1 1065 106 0 0 chr15 9775519 9775660 -75920094 + AluSg/x SINE Alu 164 304 -8 645 176 14 179 chr15 9775664 9775954 -75919800 - MER33 DNA MER1_type -28 296 55 4052 225 104 49 chr15 9776017 9776573 -75919181 + L1 LINE L1 1841 2365 -3781 2547 66 0 3 chr15 9776573 9776877 -75918877 + AluY SINE Alu 1 303 -8 4052 225 104 49 chr15 9776877 9776957 -75918797 + L1 LINE L1 2365 2439 -3707 2314 113 0 3 chr15 9776957 9777259 -75918495 + AluSx SINE Alu 1 301 -11 4052 225 104 49 chr15 9777259 9777643 -75918111 + L1 LINE L1 2439 2800 -3346 2259 109 3 0 chr15 9777643 9777946 -75917808 + AluSp SINE Alu 1 304 -9 4052 225 104 49 chr15 9777946 9778034 -75917720 + L1 LINE L1 2800 2882 -3264 7457 44 3 3 chr15 9778034 9779215 -75916539 + L1PA5 LINE L1 4974 6154 0 4052 225 104 49 chr15 9779215 9779632 -75916122 + L1 LINE L1 2882 3274 -2872 2025 134 3 14 chr15 9779632 9779922 -75915832 + AluJb SINE Alu 3 289 -23 546 57 0 0 chr15 9779925 9779995 -75915759 + (GA)n Simple_repeat Simple_repeat 1 70 0 4052 225 104 49 chr15 9779995 9780126 -75915628 + L1 LINE L1 3275 3605 -2541 286 215 43 43 chr15 9781266 9781359 -75914395 - MIR SINE MIR -121 141 49 231 152 0 0 chr15 9782355 9782401 -75913353 + CT-rich Low_complexity Low_complexity 1 46 0 378 0 0 0 chr15 9782820 9782862 -75912892 + (TG)n Simple_repeat Simple_repeat 1 42 0 433 88 25 0 chr15 9782864 9782944 -75912810 + (GA)n Simple_repeat Simple_repeat 2 83 0 757 218 35 0 chr15 9788606 9788780 -75906974 + MIR SINE MIR 83 262 0 307 286 78 48 chr15 9790876 9791082 -75904672 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 9791969 9792038 -75903716 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 210 179 30 15 chr15 9792051 9792118 -75903636 + CT-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr15 9792750 9792772 -75902982 + AT_rich Low_complexity Low_complexity 1 22 0 530 203 64 119 chr15 9792820 9792850 -75902904 + MER102a DNA MER1_type 94 124 -1293 2097 133 0 3 chr15 9792850 9793144 -75902610 - AluSx SINE Alu -11 301 9 530 203 64 119 chr15 9793144 9793364 -75902390 + MER102a DNA MER1_type 124 330 0 1718 173 4 0 chr15 9793523 9793789 -75901965 - AluJb SINE Alu -44 268 2 2471 64 0 3 chr15 9794420 9794715 -75901039 + AluY SINE Alu 1 294 -17 304 189 0 0 chr15 9795023 9795076 -75900678 + MSTC LTR MaLR 79 131 -243 1653 165 146 19 chr15 9795096 9795459 -75900295 - MSTA LTR MaLR -19 409 1 733 195 102 29 chr15 9795470 9795675 -75900079 + MSTC LTR MaLR 179 398 -30 254 186 0 0 chr15 9795738 9795781 -75899973 + MSTC LTR MaLR 354 396 0 907 236 10 5 chr15 9795836 9796031 -75899723 - MER20 DNA MER1_type -2 217 22 2479 64 14 0 chr15 9797659 9797954 -75897800 + AluSp SINE Alu 1 299 -14 26 50 0 0 chr15 9798310 9798350 -75897404 + AT_rich Low_complexity Low_complexity 1 40 0 2253 114 3 13 chr15 9798366 9798681 -75897073 + AluSp SINE Alu 1 312 -1 2266 112 0 0 chr15 9798810 9799104 -75896650 + AluSx SINE Alu 1 294 -18 1434 221 89 35 chr15 9800022 9800448 -75895306 + LTR40c LTR ERVL 9 457 -8 560 262 77 27 chr15 9801411 9801632 -75894122 - LTR33 LTR ERVL -269 252 21 261 0 0 0 chr15 9801664 9801693 -75894061 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 288 127 0 0 chr15 9801723 9801778 -75893976 + (TA)n Simple_repeat Simple_repeat 1 55 0 488 158 12 12 chr15 9801828 9801910 -75893844 + LTR41 LTR ERVL 99 180 -593 2280 152 29 31 chr15 9802333 9802786 -75892968 + L1MB4 LINE L1 5715 6166 -14 229 129 0 0 chr15 9802921 9802952 -75892802 + AluSx SINE Alu 1 31 -271 7191 117 23 46 chr15 9803052 9803805 -75891949 + L1MA1 LINE L1 4044 4813 -1489 2034 148 10 3 chr15 9803805 9804110 -75891644 + AluSx SINE Alu 1 307 -5 7191 117 23 46 chr15 9804110 9804669 -75891085 + L1MA1 LINE L1 4813 5383 -919 1918 121 0 4 chr15 9804669 9804926 -75890828 + AluSx SINE Alu 35 290 -22 7191 117 23 46 chr15 9804926 9805395 -75890359 + L1MA1 LINE L1 5383 5779 -523 2220 129 0 3 chr15 9805395 9805704 -75890050 + AluSx SINE Alu 2 309 -3 7191 117 23 46 chr15 9805704 9806217 -75889537 + L1MA1 LINE L1 5779 6302 0 1827 177 44 25 chr15 9806229 9806750 -75889004 + L1MB1 LINE L1 4942 5485 -683 348 206 0 0 chr15 9806855 9806923 -75888831 - L1 LINE L1 -2740 3406 3339 * 20831 158 22 47 chr15 9806921 9808447 -75887307 - L1 LINE L1 -2131 5434 3872 498 33 0 0 chr15 9808447 9808507 -75887247 + (TG)n Simple_repeat Simple_repeat 2 61 0 20831 158 22 47 chr15 9808507 9808520 -75887234 - L1 LINE L1 -3693 3872 3860 2050 134 0 7 chr15 9808520 9808818 -75886936 - AluSx SINE Alu -16 296 1 20831 158 22 47 chr15 9808818 9810136 -75885618 - L1 LINE L1 -3705 3860 2511 186 43 0 0 chr15 9810136 9810159 -75885595 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2061 129 0 0 chr15 9810160 9810440 -75885314 - AluSx SINE Alu -32 280 1 20831 158 22 47 chr15 9810440 9813139 -75882615 - L1 LINE L1 -5053 2512 12 1440 215 4 0 chr15 9813138 9813412 -75882342 - L1 LINE L1 -1188 4958 4684 * 1601 98 0 0 chr15 9813512 9813715 -75882039 - AluSx SINE Alu -109 203 1 1779 188 10 39 chr15 9813715 9814104 -75881650 + L1MB1 LINE L1 5791 6168 -21 782 179 0 26 chr15 9814156 9814312 -75881442 + L1MA10 LINE L1 6180 6331 -3 769 151 0 32 chr15 9814493 9814619 -75881135 + AluJb SINE Alu 3 124 -188 24 32 0 0 chr15 9814619 9814650 -75881104 + AT_rich Low_complexity Low_complexity 1 31 0 3570 271 146 23 chr15 9814650 9815537 -75880217 - L2 LINE L2 -90 3223 2446 2578 43 0 3 chr15 9815537 9815841 -75879913 + AluY SINE Alu 1 303 -8 3570 271 146 23 chr15 9815841 9816701 -75879053 - L2 LINE L2 -867 2446 1275 338 260 70 0 chr15 9816704 9816804 -75878950 - MIR SINE MIR -40 222 116 642 329 99 20 chr15 9817625 9817969 -75877785 + L2 LINE L2 2943 3313 0 250 209 0 0 chr15 9817996 9818039 -75877715 + MIR SINE MIR 196 238 -24 205 301 134 92 chr15 9818683 9818716 -75877038 + L2 LINE L2 2592 2622 -692 531 232 18 9 chr15 9818716 9818828 -75876926 + MER81 DNA DNA 1 113 -1 205 301 134 92 chr15 9818828 9818966 -75876788 + L2 LINE L2 2622 2753 -561 2044 137 0 7 chr15 9818966 9819272 -75876482 - AluSx SINE Alu -8 304 1 205 301 134 92 chr15 9819272 9819458 -75876296 + L2 LINE L2 2753 2965 -349 596 259 36 106 chr15 9819757 9819918 -75875836 - L2 LINE L2 -459 2855 2719 2421 99 0 3 chr15 9819918 9820231 -75875523 - AluSq SINE Alu -1 312 1 596 259 36 106 chr15 9820231 9820343 -75875411 - L2 LINE L2 -595 2719 2601 190 361 115 8 chr15 9820883 9821005 -75874749 + L2 LINE L2 2911 3045 -227 482 320 141 2 chr15 9821064 9821270 -75874484 - MIR SINE MIR -2 260 30 516 242 83 0 chr15 9821403 9821560 -75874194 + MIR SINE MIR 80 249 -13 254 282 126 10 chr15 9821551 9821654 -75874100 - L2 LINE L2 -2 3311 3197 * 253 320 68 10 chr15 9821687 9821790 -75873964 + L2 LINE L2 3162 3270 -2 935 256 99 50 chr15 9821918 9822543 -75873211 + HAL1b LINE L1 692 1347 -1 2130 138 0 10 chr15 9822713 9823025 -75872729 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 9823610 9823631 -75872123 + AT_rich Low_complexity Low_complexity 1 21 0 2316 102 3 0 chr15 9823790 9824093 -75871661 - AluSq SINE Alu -9 304 1 2002 146 3 3 chr15 9824399 9824707 -75871047 + AluSx SINE Alu 1 308 -4 1359 213 80 0 chr15 9824718 9824840 -75870914 + AluJo SINE Alu 1 112 -200 208 0 0 59 chr15 9824840 9824874 -75870880 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1359 213 80 0 chr15 9824874 9825014 -75870740 + AluJo SINE Alu 112 284 -28 1673 188 24 30 chr15 9825034 9825369 -75870385 + L1PA16 LINE L1 5817 6149 -17 366 23 0 0 chr15 9825388 9825431 -75870323 + (TG)n Simple_repeat Simple_repeat 2 44 0 2107 127 0 0 chr15 9825431 9825715 -75870039 - AluSx SINE Alu -28 284 1 434 167 94 10 chr15 9825827 9825923 -75869831 + MER104 DNA Tc2 74 177 -3 2369 103 0 3 chr15 9825926 9826228 -75869526 - AluSx SINE Alu -11 301 1 316 339 28 0 chr15 9826240 9826349 -75869405 + MIR SINE MIR 103 214 -48 799 246 119 25 chr15 9826349 9826593 -75869161 - MLT1D LTR MaLR -190 315 49 1234 202 107 12 chr15 9826611 9826938 -75868816 + MLT1A1 LTR MaLR 1 358 -7 233 143 0 0 chr15 9827290 9827325 -75868429 - MER5B DNA MER1_type 0 178 144 711 221 0 88 chr15 9827594 9827798 -75867956 + MER51C LTR ERV1 453 638 -2 539 193 126 30 chr15 9827798 9827933 -75867821 + MER5B DNA MER1_type 28 175 -3 1968 173 40 12 chr15 9829568 9829914 -75865840 - MLT1A1 LTR MaLR 0 365 10 1778 156 10 7 chr15 9830325 9830620 -75865134 + AluSx SINE Alu 1 296 -16 259 221 73 29 chr15 9831307 9831375 -75864379 + L2 LINE L2 3234 3304 -9 2126 96 7 14 chr15 9831429 9831711