22 0 0 0 chr15 12 34 -85695720 + AT_rich Low_complexity Low_complexity 1 22 0 1393 304 55 21 chr15 45 317 -85695437 - MLT1H1 LTR MaLR -24 531 269 2435 51 7 0 chr15 317 612 -85695142 - AluY SINE Alu -14 297 1 1393 304 55 21 chr15 612 853 -85694901 - MLT1H1 LTR MaLR -286 269 1 773 276 22 41 chr15 874 1176 -85694578 - L2 LINE L2 -277 3036 2736 1121 138 0 6 chr15 1182 1356 -85694398 - L1PA13 LINE L1 0 6163 5991 930 109 7 0 chr15 1356 1494 -85694260 + L1P4 LINE L1 5347 5485 -676 583 110 0 0 chr15 1594 1676 -85694078 + AluSp/q SINE Alu 221 302 -11 1632 240 112 14 chr15 2805 3321 -85692433 + L1ME3 LINE L1 5489 6055 -107 1363 167 40 0 chr15 3321 3543 -85692211 + AluJo SINE Alu 1 231 -81 265 158 0 0 chr15 3543 3581 -85692173 - Alu SINE Alu -257 43 6 2174 117 3 3 chr15 3655 3962 -85691792 - AluSp SINE Alu -6 307 1 1432 152 13 0 chr15 4185 4409 -85691345 + AluJb SINE Alu 1 227 -85 2085 93 0 0 chr15 4416 4684 -85691070 - AluSx SINE Alu -44 268 1 1695 135 0 75 chr15 4688 5007 -85690747 - AluJo SINE Alu -17 295 1 384 268 82 89 chr15 5505 5774 -85689980 - L1M2 LINE L1 -5442 1407 1141 324 261 101 138 chr15 9617 10267 -85685487 - L1M2 LINE L1 -5399 1450 451 2484 59 0 7 chr15 10649 10955 -85684799 - AluY SINE Alu -7 304 1 291 85 6 0 chr15 11508 11557 -85684197 - MLT2C1 LTR ERVL -4 410 349 804 252 25 3 chr15 12089 12324 -85683430 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 12324 12456 -85683298 + GA-rich Low_complexity Low_complexity 4 139 0 628 184 101 77 chr15 12512 12624 -85683130 + L1MC4 LINE L1 7593 7714 -328 2365 57 0 41 chr15 12624 12938 -85682816 - AluY SINE Alu -10 301 1 628 184 101 77 chr15 12938 13032 -85682722 + L1MC4 LINE L1 7714 7804 -238 186 143 0 0 chr15 13074 13109 -85682645 + (TA)n Simple_repeat Simple_repeat 1 35 0 1031 181 26 71 chr15 13144 13370 -85682384 - MER20 DNA MER1_type 0 219 4 800 306 39 11 chr15 13411 13770 -85681984 + L1MEc LINE L1 1601 1969 -4427 1439 195 66 10 chr15 13805 14107 -85681647 - L1MC1 LINE L1 0 6333 6015 822 287 10 10 chr15 14448 14748 -85681006 + L1MEc LINE L1 2209 2508 -3707 1336 262 51 8 chr15 14839 15346 -85680408 + L1MEc LINE L1 2506 3034 -3181 * 3056 116 57 116 chr15 15326 15455 -85680299 + L1MA5A LINE L1 5658 5793 -504 1797 128 79 0 chr15 15455 15721 -85680033 + AluSx SINE Alu 1 287 -25 3056 116 57 116 chr15 15721 16271 -85679483 + L1MA5A LINE L1 5793 6297 0 280 288 221 0 chr15 16386 16685 -85679069 + L1MEc LINE L1 3164 3528 -2687 301 214 14 0 chr15 16699 16769 -85678985 - L1 LINE L1 -2743 3403 3333 719 215 11 6 chr15 16775 16952 -85678802 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 20360 20382 -85675372 + GC_rich Low_complexity Low_complexity 1 22 0 1741 221 30 24 chr15 20738 21169 -85674585 + L1 LINE L1 3062 3498 -2648 2210 71 0 39 chr15 21169 21477 -85674277 + AluY SINE Alu 1 296 -15 1741 221 30 24 chr15 21477 21552 -85674202 + L1 LINE L1 3498 3571 -2575 1135 170 21 21 chr15 21567 21761 -85673993 - AluJo SINE Alu -115 197 4 662 44 11 0 chr15 21773 21863 -85673891 + (TA)n Simple_repeat Simple_repeat 2 92 0 2142 128 3 0 chr15 21864 22161 -85673593 - AluSx SINE Alu -14 298 1 2244 110 3 0 chr15 22696 22996 -85672758 - AluY SINE Alu -10 301 1 1717 74 4 81 chr15 23247 23518 -85672236 - AluY SINE Alu -2 309 60 364 143 0 0 chr15 24143 24199 -85671555 + AluJb SINE Alu 59 114 -188 811 205 13 0 chr15 24214 24370 -85671384 - AluSp SINE Alu -24 289 132 1703 172 17 7 chr15 24374 24671 -85671083 + LTR15 LTR ERV1 188 487 -6 810 189 18 79 chr15 24737 24856 -85670898 + AluJb SINE Alu 2 102 -210 1710 173 0 0 chr15 24856 25156 -85670598 - AluSp SINE Alu -13 300 1 810 189 18 79 chr15 25156 25264 -85670490 + AluJb SINE Alu 102 215 -97 254 88 0 0 chr15 25267 25301 -85670453 + AluJb SINE Alu 84 117 -185 734 142 0 25 chr15 25328 25448 -85670306 - AluSp SINE Alu -194 119 3 628 170 18 9 chr15 25479 25591 -85670163 + AluJb SINE Alu 2 114 -198 908 161 11 0 chr15 25593 25767 -85669987 - AluSp SINE Alu -16 297 122 235 143 18 0 chr15 26223 26279 -85669475 + G-rich Low_complexity Low_complexity 3 59 0 25 31 0 0 chr15 26748 26780 -85668974 + AT_rich Low_complexity Low_complexity 1 32 0 2435 76 0 0 chr15 26812 27115 -85668639 - AluY SINE Alu -8 303 1 273 262 24 12 chr15 27467 27551 -85668203 + L2 LINE L2 3228 3312 -1 255 345 0 0 chr15 27655 27739 -85668015 + L2 LINE L2 3230 3313 0 1693 167 0 44 chr15 28112 28430 -85667324 - AluJb SINE Alu 0 312 9 26 30 0 0 chr15 28949 28982 -85666772 + AT_rich Low_complexity Low_complexity 1 33 0 2281 57 0 0 chr15 29124 29436 -85666318 + AluY SINE Alu 1 312 0 297 0 0 0 chr15 30405 30438 -85665316 + (TG)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr15 31647 31676 -85664078 + (T)n Simple_repeat Simple_repeat 1 29 0 348 313 32 47 chr15 32115 32393 -85663361 + L1ME4a LINE L1 5708 5981 -140 707 89 0 20 chr15 32508 32609 -85663145 - AluSc SINE Alu -9 300 202 997 320 120 35 chr15 32814 33322 -85662432 + L2 LINE L2 2180 2643 -670 2205 118 0 0 chr15 33322 33626 -85662128 - AluSx SINE Alu -8 304 1 997 320 120 35 chr15 33626 34158 -85661596 + L2 LINE L2 2643 3313 0 22 35 0 0 chr15 34416 34445 -85661309 + AT_rich Low_complexity Low_complexity 1 29 0 2475 58 6 13 chr15 34688 34999 -85660755 + AluSp SINE Alu 1 309 -4 299 232 52 45 chr15 35550 35705 -85660049 - Charlie7 DNA MER1_type -36 2576 2421 24 67 0 0 chr15 36371 36416 -85659338 + AT_rich Low_complexity Low_complexity 1 45 0 210 133 40 46 chr15 37673 37846 -85657908 + (TA)n Simple_repeat Simple_repeat 1 172 0 405 141 33 56 chr15 37857 38134 -85657620 + (CATATA)n Simple_repeat Simple_repeat 1 270 0 443 136 32 55 chr15 38136 38609 -85657145 + (TA)n Simple_repeat Simple_repeat 1 461 0 184 70 70 18 chr15 38882 38939 -85656815 + (TA)n Simple_repeat Simple_repeat 1 60 0 231 318 73 27 chr15 39193 39303 -85656451 - L2 LINE L2 0 3272 3158 1130 158 11 5 chr15 39828 40018 -85655736 + L1PB3 LINE L1 5959 6149 -5 2392 39 4 0 chr15 40021 40339 -85655415 - AluY SINE Alu 0 319 1 189 0 0 0 chr15 40490 40511 -85655243 + (A)n Simple_repeat Simple_repeat 1 21 0 237 213 0 0 chr15 40511 40558 -85655196 + L2 LINE L2 3263 3309 -4 23 0 0 0 chr15 41076 41099 -85654655 + AT_rich Low_complexity Low_complexity 1 23 0 712 273 42 118 chr15 41545 41945 -85653809 + LTR16A LTR ERVL 68 437 -13 852 134 0 24 chr15 42160 42287 -85653467 + FLAM_C SINE Alu 1 124 -9 1948 112 0 0 chr15 43299 43557 -85652197 + AluSx SINE Alu 45 302 -10 237 366 30 22 chr15 43752 43886 -85651868 - L2 LINE L2 -2516 798 664 322 294 12 19 chr15 44274 44434 -85651320 - AluY SINE Alu -142 159 1 218 122 0 41 chr15 45690 45739 -85650015 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1006 207 110 42 chr15 46017 46399 -85649355 + LTR37A LTR ERV1 19 426 0 24 0 0 0 chr15 47098 47122 -85648632 + AT_rich Low_complexity Low_complexity 1 24 0 2112 96 0 60 chr15 47384 47698 -85648056 - AluY SINE Alu -14 297 3 342 219 36 51 chr15 48374 48511 -85647243 - HAL1b LINE L1 -22 1326 1192 2315 82 0 3 chr15 48519 48825 -85646929 + AluY SINE Alu 1 305 -6 31 26 0 0 chr15 48843 48881 -85646873 + AT_rich Low_complexity Low_complexity 1 38 0 2331 57 3 17 chr15 49028 49328 -85646426 - AluY SINE Alu -15 296 1 269 211 0 0 chr15 49428 49480 -85646274 - FLAM SINE Alu -2 131 80 933 195 32 52 chr15 49503 49754 -85646000 - MLT1A1 LTR MaLR 0 365 120 1808 197 37 8 chr15 50014 50369 -85645385 - MLT1A1 LTR MaLR 0 365 1 1555 65 0 10 chr15 50391 50590 -85645164 - AluY SINE Alu -4 307 111 834 85 25 8 chr15 50831 50949 -85644805 + AluY SINE Alu 1 120 -191 537 262 94 20 chr15 51087 51289 -85644465 - MIR SINE MIR -30 232 16 3262 97 15 0 chr15 51530 51995 -85643759 - L1PA10 LINE L1 -1 6167 5696 1217 77 0 0 chr15 52000 52170 -85643584 + L1PA10 LINE L1 5517 5686 -482 2495 60 0 0 chr15 53619 53918 -85641836 - AluY SINE Alu -12 299 1 186 236 246 60 chr15 54097 54296 -85641458 - L2 LINE L2 -2739 575 340 250 300 225 0 chr15 54448 54568 -85641186 - MIR SINE MIR 0 262 116 245 208 21 0 chr15 54922 55018 -85640736 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4778 126 22 19 chr15 55628 56405 -85639349 - MER4E LTR ERV1 0 779 1 24 0 0 0 chr15 56646 56670 -85639084 + AT_rich Low_complexity Low_complexity 1 24 0 2505 75 0 0 chr15 56696 57004 -85638750 + AluY SINE Alu 1 308 -3 1535 97 20 16 chr15 58957 59204 -85636550 - THE1C LTR MaLR -127 248 1 1598 154 68 7 chr15 60077 60356 -85635398 + AluSx SINE Alu 1 296 -16 2108 137 3 0 chr15 60361 60668 -85635086 + AluSg SINE Alu 1 308 -2 41 98 0 0 chr15 60685 60817 -85634937 + AT_rich Low_complexity Low_complexity 1 132 0 24 77 0 0 chr15 60865 60917 -85634837 + AT_rich Low_complexity Low_complexity 1 52 0 2018 93 31 10 chr15 61074 61365 -85634389 - AluY SINE Alu -14 297 1 2048 97 24 7 chr15 61368 61656 -85634098 - AluSc SINE Alu -16 293 1 185 378 18 18 chr15 62099 62210 -85633544 - L2 LINE L2 -251 3062 2952 2439 40 0 13 chr15 62306 62608 -85633146 - AluY SINE Alu -13 298 1 1005 244 122 29 chr15 62621 63039 -85632715 - MLT1E2 LTR MaLR -169 457 1 241 283 25 82 chr15 63101 63260 -85632494 - L2 LINE L2 -991 2323 2174 237 132 0 0 chr15 63464 63502 -85632252 + (CACG)n Simple_repeat Simple_repeat 1 38 0 271 211 13 0 chr15 63503 63579 -85632175 + MLT1D LTR MaLR 429 505 0 3374 202 61 11 chr15 63617 64422 -85631332 + L1MB7 LINE L1 4735 5636 -548 2034 118 0 0 chr15 64422 64701 -85631053 + AluSx SINE Alu 34 312 0 3374 202 61 11 chr15 64701 65259 -85630495 + L1MB7 LINE L1 5636 6165 -19 24 0 0 0 chr15 65297 65321 -85630433 + AT_rich Low_complexity Low_complexity 1 24 0 348 272 105 17 chr15 65505 65744 -85630010 + L1M4 LINE L1 4132 4391 -1755 209 200 0 0 chr15 66342 66382 -85629372 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 382 171 68 0 chr15 67583 67671 -85628083 + MSTC LTR MaLR 1 94 -334 241 300 50 40 chr15 67817 67917 -85627837 - L2 LINE L2 -3 3269 3169 2273 74 7 7 chr15 68980 69276 -85626478 + AluY SINE Alu 1 296 -15 2272 72 10 7 chr15 69289 69582 -85626172 + AluY SINE Alu 2 295 -16 449 218 142 58 chr15 69583 69808 -85625946 - L1MC4a LINE L1 -1520 6288 6045 1687 208 42 17 chr15 69953 70309 -85625445 - MLT1A1 LTR MaLR 0 365 1 2675 105 0 5 chr15 70603 70994 -85624760 - MER1A DNA MER1_type 0 529 141 36 62 0 0 chr15 72696 72760 -85622994 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr15 73216 73244 -85622510 + AT_rich Low_complexity Low_complexity 1 28 0 929 155 42 10 chr15 74193 74386 -85621368 + LTR15 LTR ERV1 288 486 -7 246 108 0 0 chr15 74417 74454 -85621300 - Alu SINE Alu -265 37 1 563 188 8 8 chr15 74482 74599 -85621155 + AluJo/FLAM SINE Alu 1 117 -185 1657 160 3 3 chr15 74602 74909 -85620845 - AluSp SINE Alu 0 313 7 785 224 13 48 chr15 74943 75057 -85620697 + AluJb SINE Alu 1 105 -207 1562 156 6 50 chr15 75057 75377 -85620377 - AluSp SINE Alu -7 306 1 785 224 13 48 chr15 75377 75490 -85620264 + AluJb SINE Alu 105 220 -92 1730 146 6 43 chr15 75532 75854 -85619900 - AluSp SINE Alu -3 310 1 1325 147 6 107 chr15 75882 76001 -85619753 + AluJb SINE Alu 1 130 -182 1624 173 0 29 chr15 76001 76313 -85619441 - AluSp SINE Alu -10 303 1 1325 147 6 107 chr15 76313 76540 -85619214 + AluJb SINE Alu 130 312 0 288 0 0 0 chr15 76696 76728 -85619026 + (A)n Simple_repeat Simple_repeat 1 32 0 391 217 64 96 chr15 77176 77397 -85618357 + L1MC5 LINE L1 7609 7819 -142 2228 128 0 0 chr15 77397 77703 -85618051 + AluSq SINE Alu 1 306 -7 391 217 64 96 chr15 77703 77795 -85617959 + L1MC5 LINE L1 7819 7912 -49 256 310 117 12 chr15 77846 78017 -85617737 - L1MEd LINE L1 -5927 192 4 340 288 136 45 chr15 78476 78674 -85617080 + L1ME4a LINE L1 5621 5836 -285 1740 150 7 7 chr15 78986 79266 -85616488 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr15 79268 79295 -85616459 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1431 208 0 4 chr15 79335 79580 -85616174 + AluJo SINE Alu 1 244 -68 38 61 0 0 chr15 80322 80388 -85615366 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr15 80844 80872 -85614882 + AT_rich Low_complexity Low_complexity 1 28 0 1788 60 20 8 chr15 81153 81402 -85614352 - MER11B LTR ERVK -984 252 1 1654 111 91 4 chr15 81402 81645 -85614109 + AluSx SINE Alu 49 312 0 268 250 307 21 chr15 81992 82132 -85613622 + L2 LINE L2 3114 3293 -20 26 0 0 0 chr15 82766 82792 -85612962 + AT_rich Low_complexity Low_complexity 1 26 0 765 180 24 24 chr15 82792 82959 -85612795 - L1MC3 LINE L1 -23 7762 7596 323 223 154 23 chr15 84181 84311 -85611443 + MER103 DNA DNA 8 154 -12 250 276 17 52 chr15 84550 84666 -85611088 + MER5A DNA MER1_type 56 167 -22 2646 48 0 0 chr15 84988 85299 -85610455 - AluY SINE Alu 0 311 1 186 342 179 5 chr15 85983 86173 -85609581 - L2 LINE L2 -1268 2046 1824 2202 238 46 26 chr15 87789 88529 -85607225 + L1ME3A LINE L1 5407 6161 -9 270 0 0 0 chr15 88731 88761 -85606993 + (TTCCC)n Simple_repeat Simple_repeat 5 34 0 2315 71 0 3 chr15 89397 89708 -85606046 - AluY SINE Alu 0 310 1 2506 31 41 0 chr15 90451 90741 -85605013 - AluY SINE Alu -9 302 1 556 184 14 14 chr15 91906 92047 -85603707 - L1MA10 LINE L1 -2 6332 6192 1000 188 10 5 chr15 92182 92374 -85603380 - AluJb SINE Alu -4 308 116 2522 223 76 14 chr15 92379 93736 -85602018 - L1ME1 LINE L1 -244 5922 4493 246 270 40 8 chr15 93862 93988 -85601766 + L1ME LINE L1 1243 1372 -5158 416 277 134 57 chr15 93996 94332 -85601422 + L1ME LINE L1 1332 1650 -4892 249 296 172 0 chr15 94332 94501 -85601253 + L1M2 LINE L1 2374 2571 -4278 1913 36 0 9 chr15 94783 95036 -85600718 + AluY SINE Alu 59 309 0 316 282 32 97 chr15 95150 95210 -85600544 + L1ME LINE L1 2159 2221 -4319 2235 115 0 0 chr15 95210 95506 -85600248 + AluSx SINE Alu 1 296 -16 316 282 32 97 chr15 95506 95661 -85600093 + L1ME LINE L1 2221 2360 -4180 21 0 0 0 chr15 95715 95736 -85600018 + AT_rich Low_complexity Low_complexity 1 21 0 1243 121 0 0 chr15 95737 95910 -85599844 + AluSg/x SINE Alu 121 293 -17 1576 191 48 18 chr15 95910 96302 -85599452 + L1MB4 LINE L1 5777 6180 0 497 217 95 59 chr15 97094 97315 -85598439 + L1MC5 LINE L1 7680 7908 -53 1934 100 12 0 chr15 97908 98167 -85597587 + AluSq SINE Alu 1 262 -51 1324 211 219 20 chr15 98173 98684 -85597070 + MER90 LTR ERV1 2 614 0 1975 162 3 0 chr15 99302 99598 -85596156 + AluJb SINE Alu 1 297 -15 390 318 35 0 chr15 99601 99774 -85595980 + L1MC4 LINE L1 6763 6941 -1101 279 250 73 0 chr15 99977 100073 -85595681 + L1MC5 LINE L1 7124 7226 -735 306 291 109 11 chr15 100207 100382 -85595372 + L1MC5 LINE L1 7305 7496 -465 1002 178 201 22 chr15 100398 100555 -85595199 + MLT1B LTR MaLR 15 143 -231 2164 108 7 0 chr15 100555 100852 -85594902 + AluSx SINE Alu 5 303 -9 1002 178 201 22 chr15 100852 101010 -85594744 + MLT1B LTR MaLR 143 374 0 368 254 48 60 chr15 101036 101304 -85594450 + L1MC5 LINE L1 7513 7777 -184 249 311 259 11 chr15 101569 101855 -85593899 + L2 LINE L2 2952 3308 -5 343 239 62 44 chr15 103898 104011 -85591743 + L1ME LINE L1 2 116 -5954 345 273 55 55 chr15 104696 104776 -85590978 + L1ME LINE L1 715 794 -5276 2221 78 10 0 chr15 104776 105071 -85590683 + AluSg SINE Alu 1 298 -12 345 273 55 55 chr15 105071 105320 -85590434 + L1ME LINE L1 793 1044 -5026 481 296 65 88 chr15 105323 105674 -85590080 + L1ME LINE L1 1065 1421 -4673 2333 87 0 0 chr15 107015 107324 -85588430 + AluY SINE Alu 1 309 -2 1131 133 0 0 chr15 107324 107490 -85588264 + AluSc SINE Alu 132 297 -12 2069 111 3 3 chr15 107600 107898 -85587856 - AluSx SINE Alu -14 298 1 935 178 40 0 chr15 108223 108397 -85587357 - MER58A DNA MER1_type 0 224 44 912 190 194 7 chr15 109661 109797 -85585957 - MER2 DNA MER2_type 0 344 235 2427 75 0 0 chr15 109797 110105 -85585649 - AluY SINE Alu -3 308 1 912 190 194 7 chr15 110105 110257 -85585497 - MER2 DNA MER2_type -109 235 2 1086 96 5 75 chr15 110403 110591 -85585163 - AluSg/x SINE Alu -3 309 135 2209 94 0 10 chr15 110591 110899 -85584855 - AluY SINE Alu -6 305 1 353 242 10 0 chr15 111131 111230 -85584524 - MER5A DNA MER1_type -80 98 10 301 264 179 9 chr15 113264 113370 -85582384 + L1ME4a LINE L1 5995 6118 -3 2113 89 7 13 chr15 113393 113697 -85582057 + AluSx SINE Alu 1 302 -10 1997 117 0 19 chr15 115332 115640 -85580114 - AluSg SINE Alu -8 302 1 695 167 0 0 chr15 116470 116584 -85579170 - FLAM_A SINE Alu -9 133 20 21 36 0 0 chr15 116770 116798 -85578956 + AT_rich Low_complexity Low_complexity 1 28 0 311 323 6 0 chr15 117068 117235 -85578519 + (CA)n Simple_repeat Simple_repeat 1 168 0 250 307 17 22 chr15 117550 117729 -85578025 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 864 236 145 51 chr15 118063 118449 -85577305 + MLT1C LTR MaLR 3 425 -42 1504 166 80 43 chr15 118449 118861 -85576893 + MLT1C LTR MaLR 1 467 0 276 75 132 0 chr15 119238 119291 -85576463 - L1MC1 LINE L1 -9 6324 6265 626 211 55 0 chr15 119291 119419 -85576335 - AluJb SINE Alu -4 308 174 328 264 107 21 chr15 122926 123066 -85572688 + L1ME LINE L1 5631 5782 -339 2224 186 107 0 chr15 123068 123574 -85572180 + MER68 LTR ERV1 1 560 -2 1797 272 52 47 chr15 123582 124547 -85571207 + HERVL68 LTR ERVL 60 1117 -1920 30 59 0 0 chr15 124547 124598 -85571156 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr15 124598 124639 -85571115 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 139 0 0 chr15 124642 124685 -85571069 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1544 148 0 44 chr15 124700 124971 -85570783 - AluJb SINE Alu -31 281 23 1390 213 67 13 chr15 125104 125554 -85570200 + L1MB5 LINE L1 2613 3086 -3060 912 196 5 5 chr15 125558 125747 -85570007 + AluJb SINE Alu 118 306 -6 1513 221 95 12 chr15 125752 125887 -85569867 + L1MB5 LINE L1 3112 3234 -2912 2311 87 0 6 chr15 125887 126198 -85569556 + AluSc SINE Alu 1 309 0 1513 221 95 12 chr15 126198 126569 -85569185 + L1MB5 LINE L1 3234 3660 -2486 3588 191 67 67 chr15 126574 127464 -85568290 + L1MB5 LINE L1 4457 5357 -817 2227 109 0 0 chr15 127464 127776 -85567978 + AluSx SINE Alu 1 312 0 3588 191 67 67 chr15 127776 128595 -85567159 + L1MB5 LINE L1 5357 6174 0 255 61 0 0 chr15 128602 128635 -85567119 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 131011 131033 -85564721 + AT_rich Low_complexity Low_complexity 1 22 0 1060 256 53 12 chr15 131203 131523 -85564231 - MER58B DNA MER1_type -5 336 4 2048 227 72 39 chr15 131677 132263 -85563491 + MER77 LTR ERV1 1 605 0 2232 78 3 29 chr15 132732 133040 -85562714 + AluSc SINE Alu 1 300 -9 2211 79 0 0 chr15 136773 137052 -85558702 - AluSq SINE Alu -26 287 9 1873 159 0 0 chr15 137067 137357 -85558397 - AluJb SINE Alu -22 290 1 750 244 45 42 chr15 139447 139783 -85555971 + L1MB3 LINE L1 2713 3049 -3097 387 208 32 97 chr15 139833 139987 -85555767 + L1MC5 LINE L1 6957 7100 -861 477 281 93 56 chr15 140155 140604 -85555150 + L1MC5 LINE L1 7317 7782 -179 2251 68 0 0 chr15 140610 140926 -85554828 + AluY SINE Alu 5 320 0 4576 179 60 8 chr15 141133 142009 -85553745 + L1MB3 LINE L1 4754 5728 -455 2136 101 3 7 chr15 142009 142317 -85553437 + AluSc SINE Alu 1 307 -2 4576 179 60 8 chr15 142317 142766 -85552988 + L1MB3 LINE L1 5728 6152 -31 241 302 17 17 chr15 142745 142861 -85552893 + L1ME2 LINE L1 3556 3671 -2475 * 1050 264 53 24 chr15 143118 143535 -85552219 + L1ME2 LINE L1 3723 4151 -1995 1096 272 101 34 chr15 143562 144379 -85551375 + L1ME2 LINE L1 4830 5667 -497 1342 155 102 11 chr15 144379 144643 -85551111 + AluJb SINE Alu 4 291 -21 1096 272 101 34 chr15 144643 144857 -85550897 + L1ME2 LINE L1 5667 5865 -299 213 271 0 0 chr15 145673 145732 -85550022 - L3b LINE CR1 -170 1413 1355 2007 128 0 0 chr15 145734 146031 -85549723 + AluSx SINE Alu 1 297 -15 369 0 0 0 chr15 146034 146075 -85549679 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 208 0 42 chr15 146083 146155 -85549599 - L1MCa LINE L1 -4362 2064 1996 797 171 0 8 chr15 147635 147764 -85547990 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr15 147766 147787 -85547967 + AT_rich Low_complexity Low_complexity 1 21 0 2322 81 7 3 chr15 147888 148196 -85547558 - AluSq SINE Alu -4 309 1 1958 101 0 34 chr15 150126 150423 -85545331 - AluSc SINE Alu -22 287 1 23 33 0 0 chr15 150919 150949 -85544805 + AT_rich Low_complexity Low_complexity 1 30 0 2044 153 0 0 chr15 151629 151923 -85543831 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 151930 151987 -85543767 - Charlie5 DNA MER1_type -57 2567 2508 2251 106 3 0 chr15 151987 152280 -85543474 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 152280 152589 -85543165 - Charlie5 DNA MER1_type -116 2508 2222 280 246 32 56 chr15 152572 152698 -85543056 - Charlie5 DNA MER1_type -2489 123 1 * 2165 121 0 13 chr15 154148 154453 -85541301 + AluSx SINE Alu 1 301 -11 1984 138 7 0 chr15 154470 154774 -85540980 + AluSp SINE Alu 1 306 -7 1026 248 158 38 chr15 155303 155524 -85540230 + L1ME2 LINE L1 5487 5680 -484 1683 174 10 3 chr15 155524 155822 -85539932 + AluJb SINE Alu 3 302 -10 1026 248 158 38 chr15 155822 156105 -85539649 + L1ME2 LINE L1 5680 6052 -112 1963 74 0 4 chr15 157121 157363 -85538391 - AluY SINE Alu -70 241 1 280 188 94 0 chr15 158148 158212 -85537542 + L1M4 LINE L1 2617 2686 -3460 369 85 0 0 chr15 158214 158261 -85537493 - AluY SINE Alu -6 296 250 1439 94 0 21 chr15 158261 158452 -85537302 - AluY SINE Alu -124 187 1 2803 237 55 51 chr15 158452 158656 -85537098 + L1M4 LINE L1 2679 2881 -3265 1974 128 3 10 chr15 158656 158945 -85536809 + AluSp SINE Alu 1 287 -26 2803 237 55 51 chr15 158945 159554 -85536200 + L1M4 LINE L1 2881 3486 -2660 2298 107 3 3 chr15 159554 159862 -85535892 - AluSq SINE Alu -4 309 2 2803 237 55 51 chr15 159862 160141 -85535613 + L1M4 LINE L1 3486 3780 -2366 2080 116 0 47 chr15 160141 160459 -85535295 + AluSx SINE Alu 1 303 -9 2803 237 55 51 chr15 160459 160527 -85535227 + L1M4 LINE L1 3780 3846 -2300 922 130 0 0 chr15 160531 160662 -85535092 + FLAM_C SINE Alu 6 136 -7 1591 252 29 25 chr15 160682 161209 -85534545 + L1M4 LINE L1 3839 4367 -1779 225 128 26 0 chr15 162496 162535 -85533219 + MER58B DNA MER1_type 302 341 0 1921 151 43 0 chr15 164218 164517 -85531237 + AluSx SINE Alu 1 312 0 708 234 53 6 chr15 164628 164799 -85530955 - MER58A DNA MER1_type -1 223 45 2245 103 3 0 chr15 166702 166993 -85528761 + AluSq SINE Alu 1 292 -21 1053 252 45 13 chr15 167048 167358 -85528396 + L1ME1 LINE L1 5803 6122 -44 1590 111 0 4 chr15 170422 170647 -85525107 - AluSp SINE Alu -5 308 85 270 52 7 0 chr15 170671 170750 -85525004 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 28 48 0 0 chr15 170754 170796 -85524958 + AT_rich Low_complexity Low_complexity 1 42 0 2188 93 0 23 chr15 171849 172150 -85523604 + AluY SINE Alu 1 294 -17 21 36 0 0 chr15 174228 174256 -85521498 + AT_rich Low_complexity Low_complexity 1 28 0 239 300 90 0 chr15 175230 175330 -85520424 - MIR SINE MIR -60 148 40 819 93 0 0 chr15 176144 176279 -85519475 + AluY SINE Alu 175 309 0 1708 114 4 0 chr15 176447 176684 -85519070 + AluSg/x SINE Alu 75 312 0 1827 120 11 19 chr15 176968 177234 -85518520 + AluSx SINE Alu 49 312 0 344 172 81 46 chr15 177235 177322 -85518432 + L1MD2 LINE L1 5801 5890 -469 1292 175 18 13 chr15 177322 177550 -85518204 + AluJo SINE Alu 60 288 -24 25 31 0 0 chr15 177550 177582 -85518172 + AT_rich Low_complexity Low_complexity 1 32 0 1029 210 174 3 chr15 177614 177942 -85517812 + L1MD2 LINE L1 5960 6343 -16 1409 178 63 72 chr15 178289 178443 -85517311 + MER2 DNA MER2_type 1 155 -190 792 164 0 15 chr15 178443 178577 -85517177 + FLAM_C SINE Alu 2 133 0 1607 160 82 3 chr15 178583 178865 -85516889 + AluJb SINE Alu 1 304 -8 1409 178 63 72 chr15 178865 179051 -85516703 + MER2 DNA MER2_type 160 345 0 206 246 15 0 chr15 179073 179138 -85516616 + A-rich Low_complexity Low_complexity 4 69 0 2048 97 48 7 chr15 179469 179758 -85515996 - AluSp SINE Alu -12 301 1 1401 153 142 47 chr15 179993 180084 -85515670 + AluJo SINE Alu 1 82 -230 324 0 0 0 chr15 180084 180120 -85515634 + (CA)n Simple_repeat Simple_repeat 1 36 0 1401 153 142 47 chr15 180120 180303 -85515451 + AluJo SINE Alu 82 301 -11 492 264 34 7 chr15 180862 181010 -85514744 - MIR SINE MIR -30 232 81 2226 104 0 17 chr15 181091 181390 -85514364 + AluSx SINE Alu 1 294 -18 5260 211 69 83 chr15 182551 183120 -85512634 + L1MDa LINE L1 831 1406 -5134 1948 124 4 0 chr15 183120 183395 -85512359 + AluSg SINE Alu 1 276 -34 5260 211 69 83 chr15 183395 184333 -85511421 + L1MDa LINE L1 1406 2355 -4185 1667 158 83 9 chr15 184333 184669 -85511085 - MER46B DNA MER2_type 0 236 1 5260 211 69 83 chr15 184669 185107 -85510647 + L1MDa LINE L1 2355 2798 -3742 2232 108 26 7 chr15 185107 185414 -85510340 + AluSq SINE Alu 1 313 0 5260 211 69 83 chr15 185414 187115 -85508639 + L1MDa LINE L1 2798 4422 -2118 245 311 126 0 chr15 188033 188152 -85507602 - MIR SINE MIR 0 262 129 2264 93 13 3 chr15 188187 188489 -85507265 - AluY SINE Alu -6 305 1 1842 99 15 33 chr15 188744 189016 -85506738 + AluSp SINE Alu 34 300 -13 1935 132 0 35 chr15 189018 189328 -85506426 + AluSq SINE Alu 1 299 -14 314 325 38 24 chr15 189361 189573 -85506181 + L1MEc LINE L1 1850 2064 -4332 833 242 148 25 chr15 189582 189975 -85505779 + L1MEc LINE L1 2215 2655 -3560 397 167 0 0 chr15 190769 190829 -85504925 - AluS SINE Alu -9 292 233 1251 121 0 0 chr15 190831 190996 -85504758 - AluSq SINE Alu -148 165 1 2080 194 84 20 chr15 190996 191554 -85504200 + L1MEc LINE L1 2752 3345 -2870 246 309 31 0 chr15 191597 191694 -85504060 - MIR SINE MIR -22 240 141 742 209 26 13 chr15 191702 191855 -85503899 - FRAM SINE Alu -21 155 1 1441 83 0 0 chr15 192220 192401 -85503353 + AluY SINE Alu 131 311 0 2396 101 0 3 chr15 192411 192718 -85503036 + AluSq SINE Alu 1 306 -7 1415 173 43 18 chr15 192721 192998 -85502756 + L1M3 LINE L1 5325 5608 -572 606 237 0 0 chr15 192999 193117 -85502637 + FLAM_C SINE Alu 2 119 -24 694 108 0 0 chr15 193127 193229 -85502525 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 193229 193261 -85502493 + AT_rich Low_complexity Low_complexity 1 32 0 2617 59 0 0 chr15 193676 193979 -85501775 + AluY SINE Alu 1 303 -8 443 241 73 7 chr15 194552 194689 -85501065 - MER21B LTR ERV1 -57 806 661 577 220 16 44 chr15 194693 194875 -85500879 + L1MDa LINE L1 1543 1719 -4821 2073 164 117 5 chr15 194920 195347 -85500407 + LTR53 LTR ERVL 5 479 -40 813 222 57 4 chr15 195420 195650 -85500104 + L1ME2 LINE L1 5323 5564 -2478 895 248 17 111 chr15 195802 195908 -85499846 + MER58B DNA MER1_type 3 117 -2303 1710 79 8 75 chr15 195908 196160 -85499594 - AluSx SINE Alu -77 235 1 895 248 17 111 chr15 196160 196425 -85499329 + MER58B DNA MER1_type 117 339 -2 2039 149 0 0 chr15 196657 196959 -85498795 + AluSg1 SINE Alu 1 302 -7 798 233 118 28 chr15 198028 198315 -85497439 + L1ME2 LINE L1 5851 6163 -1 273 29 0 0 chr15 198468 198502 -85497252 + (TG)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr15 198515 198543 -85497211 + AT_rich Low_complexity Low_complexity 1 28 0 2266 114 0 3 chr15 198606 198914 -85496840 - AluSx SINE Alu -2 310 4 2367 75 0 16 chr15 198977 199283 -85496471 + AluY SINE Alu 2 302 -9 276 105 0 0 chr15 199288 199326 -85496428 - tRNA-Phe-TTC tRNA tRNA -38 38 1 390 300 144 34 chr15 200150 200232 -85495522 + L1MC4a LINE L1 5856 5928 -1880 2171 115 3 3 chr15 200232 200545 -85495209 + AluSq SINE Alu 1 313 0 390 300 144 34 chr15 200545 200815 -85494939 + L1MC4a LINE L1 5928 6247 -1561 25 51 0 0 chr15 200846 200885 -85494869 + AT_rich Low_complexity Low_complexity 1 39 0 2170 125 3 6 chr15 201004 201317 -85494437 + AluSx SINE Alu 1 312 0 471 270 138 6 chr15 201404 201563 -85494191 + L1MD3 LINE L1 6663 6842 -1153 2187 128 0 0 chr15 201596 201893 -85493861 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 201927 201949 -85493805 + AT_rich Low_complexity Low_complexity 1 22 0 429 70 0 0 chr15 202189 202246 -85493508 + (TA)n Simple_repeat Simple_repeat 1 57 0 2170 119 3 0 chr15 202267 202562 -85493192 - AluSc SINE Alu -13 296 1 6175 146 16 40 chr15 202562 204348 -85491406 - L1MA3 LINE L1 -246 6059 4231 2372 101 0 0 chr15 204348 204656 -85491098 + AluSx SINE Alu 1 308 -4 6175 146 16 40 chr15 204656 204819 -85490935 - L1MA3 LINE L1 -2074 4231 4162 2173 133 13 0 chr15 204819 205127 -85490627 - AluSx SINE Alu 0 312 1 6175 146 16 40 chr15 205127 205166 -85490588 - L1MA3 LINE L1 -2143 4162 4124 5622 15 0 8 chr15 205173 205781 -85489973 - L1PA2 LINE L1 0 6155 5553 5225 22 2 0 chr15 205781 206561 -85489193 + L1PA2 LINE L1 4781 5561 -594 * 6471 169 47 23 chr15 206557 207294 -85488460 - L1MA3 LINE L1 -2019 4127 3344 2146 135 0 3 chr15 207294 207598 -85488156 - AluSx SINE Alu -9 303 1 6471 169 47 23 chr15 207598 208193 -85487561 - L1MA3 LINE L1 -2802 3344 2764 * 7910 151 17 7 chr15 208185 209508 -85486246 - L1 LINE L1 -1158 4988 3652 1878 217 35 27 chr15 209508 209987 -85485767 - L1MA3 LINE L1 -3384 2762 2280 1129 202 129 14 chr15 210018 210305 -85485449 + MLT1E1 LTR MaLR 326 645 -9 781 200 21 14 chr15 210486 210626 -85485128 + AluJo SINE Alu 1 141 -171 1744 160 17 3 chr15 210628 210915 -85484839 + AluJb SINE Alu 1 291 -21 51 0 0 0 chr15 210915 210966 -85484788 + AT_rich Low_complexity Low_complexity 1 51 0 2218 120 0 0 chr15 211259 211568 -85484186 + AluY SINE Alu 1 309 -2 1981 140 3 3 chr15 211647 211947 -85483807 + AluJb SINE Alu 1 300 -12 223 336 43 51 chr15 211970 212223 -85483531 - L2 LINE L2 -900 2414 2164 1436 202 26 0 chr15 212816 213088 -85482666 + AluJo SINE Alu 1 279 -33 188 86 29 0 chr15 213090 213125 -85482629 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 203 308 58 29 chr15 213427 213531 -85482223 - MIR SINE MIR -136 126 20 2142 43 98 7 chr15 213657 213933 -85481821 - AluY SINE Alu -10 301 1 251 157 20 0 chr15 214918 214969 -85480785 + MER41A LTR ERV1 402 453 -101 437 202 43 40 chr15 214984 215041 -85480713 + MER58B DNA MER1_type 70 125 -2295 2226 96 3 20 chr15 215041 215344 -85480410 + AluSg SINE Alu 1 298 -12 437 202 43 40 chr15 215344 215518 -85480236 + MER58B DNA MER1_type 125 340 -1 969 94 23 0 chr15 215980 216108 -85479646 + AluSg SINE Alu 1 131 -179 1230 150 0 0 chr15 216526 216713 -85479041 + AluSg SINE Alu 119 305 -5 799 180 0 0 chr15 216823 216951 -85478803 + FLAM_C SINE Alu 1 128 -5 2112 80 62 0 chr15 217247 217523 -85478231 - AluSc SINE Alu -16 293 1 2186 107 7 0 chr15 217563 217854 -85477900 - AluSx SINE Alu -19 293 1 903 251 58 86 chr15 217962 218392 -85477362 + L1MD1 LINE L1 5825 6242 0 2059 107 17 3 chr15 218810 219100 -85476654 + AluSx SINE Alu 1 294 -18 2187 95 20 16 chr15 219768 220072 -85475682 + AluSx SINE Alu 1 305 -7 2235 92 10 0 chr15 220586 220878 -85474876 - AluSq SINE Alu -18 295 1 21 36 0 0 chr15 221203 221231 -85474523 + AT_rich Low_complexity Low_complexity 1 28 0 191 188 21 0 chr15 222053 222101 -85473653 + GA-rich Low_complexity Low_complexity 1 49 0 384 268 82 89 chr15 222410 222679 -85473075 + L1M4c LINE L1 1141 1407 -5442 1695 135 0 75 chr15 223177 223496 -85472258 + AluJo SINE Alu 1 295 -17 2085 93 0 0 chr15 223500 223768 -85471986 + AluSx SINE Alu 1 268 -44 1432 152 13 0 chr15 223775 223999 -85471755 - AluJb SINE Alu -85 227 1 2121 120 3 3 chr15 224222 224523 -85471231 + AluSp SINE Alu 1 301 -12 465 257 37 39 chr15 224525 224709 -85471045 + L1M4c LINE L1 2887 3074 -3774 1892 162 3 0 chr15 224709 225011 -85470743 + AluJb SINE Alu 1 303 -9 465 257 37 39 chr15 225011 225037 -85470717 + L1M4c LINE L1 3074 3099 -3749 2116 105 10 0 chr15 225039 225335 -85470419 - AluSq SINE Alu -9 304 6 2072 138 0 0 chr15 225364 225660 -85470094 + AluSx SINE Alu 1 296 -16 2303 109 3 0 chr15 225820 226132 -85469622 - AluSp SINE Alu 0 313 1 2307 100 0 3 chr15 226136 226436 -85469318 - AluSx SINE Alu -13 299 1 2114 133 0 0 chr15 226555 226849 -85468905 - AluJb SINE Alu -18 294 1 24 0 0 0 chr15 226920 226944 -85468810 + AT_rich Low_complexity Low_complexity 1 24 0 2333 74 0 10 chr15 226951 227248 -85468506 + AluY SINE Alu 5 298 -13 22 0 0 0 chr15 227441 227463 -85468291 + AT_rich Low_complexity Low_complexity 1 22 0 2388 75 0 31 chr15 227606 227926 -85467828 - AluY SINE Alu -1 310 1 186 284 0 0 chr15 228089 228170 -85467584 + T-rich Low_complexity Low_complexity 5 85 0 2425 155 52 2 chr15 228419 228825 -85466929 + MSTB LTR MaLR 1 426 0 517 100 0 67 chr15 229483 229573 -85466181 - L1PA8 LINE L1 -6 6166 6083 841 235 6 6 chr15 229734 229913 -85465841 - MLT1A1 LTR MaLR -15 350 172 2342 110 33 0 chr15 230014 230350 -85465404 + L1PA13 LINE L1 5628 5974 -189 631 266 39 34 chr15 230352 230585 -85465169 - L2 LINE L2 -570 2744 2511 49 71 0 0 chr15 230735 230833 -85464921 + AT_rich Low_complexity Low_complexity 1 98 0 2714 109 8 16 chr15 231824 232191 -85463563 - THE1B LTR MaLR 0 364 1 6882 124 25 43 chr15 232191 233300 -85462454 - THE1B-int LTR MaLR 0 1580 490 2272 68 23 16 chr15 233300 233608 -85462146 - AluY SINE Alu -1 310 1 6882 124 25 43 chr15 233608 233641 -85462113 - THE1B-int LTR MaLR -1090 490 458 2278 78 0 0 chr15 234101 234405 -85461349 - AluY SINE Alu 0 304 1 1100 92 7 7 chr15 234532 234684 -85461070 + AluY SINE Alu 1 152 -159 225 94 0 0 chr15 234787 234819 -85460935 + (A)n Simple_repeat Simple_repeat 1 32 0 982 253 25 8 chr15 234819 235056 -85460698 - MLT1H1 LTR MaLR -24 531 291 2447 47 7 0 chr15 235091 235388 -85460366 - AluY SINE Alu -12 299 1 1981 140 3 3 chr15 236103 236403 -85459351 - AluJb SINE Alu -12 300 1 2458 68 0 3 chr15 236483 236791 -85458963 - AluY SINE Alu -4 307 1 186 284 0 0 chr15 236954 237035 -85458719 + T-rich Low_complexity Low_complexity 5 85 0 2362 160 52 5 chr15 237284 237691 -85458063 + MSTB LTR MaLR 1 426 0 488 111 0 67 chr15 238348 238438 -85457316 - L1PA8 LINE L1 -6 6166 6083 1675 226 9 6 chr15 238599 238948 -85456806 - MLT1A1 LTR MaLR -15 350 1 347 322 106 35 chr15 238975 239230 -85456524 - L1 LINE L1 -2273 3873 3601 24 0 0 0 chr15 239308 239332 -85456422 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 239737 239758 -85455996 + AT_rich Low_complexity Low_complexity 1 21 0 740 102 0 10 chr15 239971 240113 -85455641 - AluSp/q SINE Alu 0 313 192 327 275 88 0 chr15 240451 240542 -85455212 + L2 LINE L2 3154 3252 -20 595 264 97 33 chr15 240573 240842 -85454912 + MLT1E2 LTR MaLR 1 285 -341 2628 45 0 0 chr15 241162 241473 -85454281 - AluY SINE Alu 0 311 1 502 265 66 24 chr15 241477 241643 -85454111 - MLT1H1 LTR MaLR -345 245 73 1459 122 77 12 chr15 242339 242586 -85453168 - L1PA10 LINE L1 -2 6166 5904 505 232 0 11 chr15 242630 242811 -85452943 + (TA)n Simple_repeat Simple_repeat 2 180 0 229 260 0 41 chr15 242834 242957 -85452797 + A-rich Low_complexity Low_complexity 1 118 0 398 188 10 0 chr15 242957 243053 -85452701 + (TA)n Simple_repeat Simple_repeat 2 98 0 198 345 0 0 chr15 243568 243623 -85452131 - MIR SINE MIR -133 75 21 1980 139 7 13 chr15 243848 244151 -85451603 - AluJb SINE Alu -11 301 1 241 192 208 48 chr15 244346 244471 -85451283 - MER103 DNA DNA -20 146 2 951 174 64 100 chr15 244688 244999 -85450755 + AluY SINE Alu 1 300 -1 578 290 44 30 chr15 245002 245077 -85450677 + L1M4 LINE L1 4378 4451 -1695 1477 195 31 92 chr15 245077 245466 -85450288 + MLT1A1 LTR MaLR 1 365 0 578 290 44 30 chr15 245466 245687 -85450067 + L1M4 LINE L1 4451 4678 -1468 772 174 14 28 chr15 245700 245844 -85449910 + FLAM_C SINE Alu 2 143 0 1565 159 67 14 chr15 245891 246174 -85449580 - AluJb SINE Alu -14 298 1 198 0 0 0 chr15 246182 246204 -85449550 + (T)n Simple_repeat Simple_repeat 1 22 0 281 238 16 0 chr15 246405 246468 -85449286 - MIR SINE MIR -112 150 87 1585 174 20 40 chr15 246696 246994 -85448760 - AluJo SINE Alu -20 292 1 255 61 0 0 chr15 247005 247037 -85448717 + (TG)n Simple_repeat Simple_repeat 1 65 0 255 61 0 0 chr15 247037 247070 -85448684 + (TG)n Simple_repeat Simple_repeat 2 34 0 908 219 26 59 chr15 247255 247561 -85448193 - L1MA9 LINE L1 -30 6282 5987 294 164 0 0 chr15 247734 247789 -85447965 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 * 414 139 0 0 chr15 247782 247854 -85447900 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2151 131 3 3 chr15 248329 248641 -85447113 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 248731 248787 -85446967 + MER3 DNA MER1_type 1 56 -153 836 201 53 0 chr15 248798 248967 -85446787 + AluJb SINE Alu 133 310 -2 319 285 106 68 chr15 248967 249174 -85446580 + L1MEd LINE L1 931 1145 -4974 2138 110 0 0 chr15 249211 249520 -85446234 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 249829 249883 -85445871 + (CA)n Simple_repeat Simple_repeat 2 54 0 2620 49 0 0 chr15 251494 251798 -85443956 + AluY SINE Alu 1 304 -7 270 81 0 0 chr15 252047 252084 -85443670 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr15 252083 252106 -85443648 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 6074 70 5 4 chr15 252324 253082 -85442672 + L1PA7 LINE L1 5383 6141 -13 3877 63 2 4 chr15 252590 253083 -85442671 + L1PA7 LINE L1 5651 6173 0 240 0 32 0 chr15 253083 253114 -85442640 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 801 274 55 30 chr15 253194 253522 -85442232 + LTR16B LTR ERVL 129 464 0 308 265 15 98 chr15 253526 253658 -85442096 - MIR SINE MIR -95 167 47 635 158 0 0 chr15 253837 253938 -85441816 + AluJb SINE Alu 136 236 -76 266 178 0 0 chr15 253980 254025 -85441729 + Alu SINE Alu 248 292 -9 631 266 179 19 chr15 254555 254818 -85440936 + L1ME3A LINE L1 5430 5734 -428 522 278 130 40 chr15 254820 255173 -85440581 + L1ME3A LINE L1 5782 6166 -4 2295 68 0 0 chr15 255581 255877 -85439877 - AluY SINE Alu -15 296 1 1488 246 81 27 chr15 258487 258930 -85436824 - MLT1C LTR MaLR 0 467 1 310 160 0 0 chr15 259780 259830 -85435924 - MIR3 SINE MIR -21 187 138 2279 93 0 0 chr15 259855 260157 -85435597 + AluY SINE Alu 1 302 -9 2190 67 0 0 chr15 260917 261221 -85434533 + AluY SINE Alu 1 304 0 758 252 141 27 chr15 262236 262569 -85433185 + L1ME3 LINE L1 5685 6055 -107 1559 183 31 0 chr15 262569 262858 -85432896 + AluJb SINE Alu 1 298 -14 2073 226 56 56 chr15 262858 263477 -85432277 - L1M4 LINE L1 -2651 3495 2874 1898 122 0 10 chr15 263477 263772 -85431982 - AluSq SINE Alu -21 292 1 2073 226 56 56 chr15 263772 263973 -85431781 - L1M4 LINE L1 -3271 2875 2675 302 202 53 26 chr15 263973 264065 -85431689 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 1967 83 0 18 chr15 264065 264341 -85431413 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 264341 264362 -85431392 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2221 74 0 48 chr15 264362 264674 -85431080 + AluY SINE Alu 1 297 -14 325 229 133 0 chr15 264676 264781 -85430973 - L1M4 LINE L1 -3460 2686 2568 1340 101 106 0 chr15 265751 265959 -85429795 + MER30 DNA MER1_type 1 230 0 1544 149 88 0 chr15 266942 267204 -85428550 - AluJb SINE Alu -19 293 9 943 279 126 26 chr15 268216 268504 -85427250 - L1ME2 LINE L1 -112 6052 5794 1683 163 13 3 chr15 268504 268811 -85426943 - AluJb SINE Alu 0 312 3 943 279 126 26 chr15 268811 269023 -85426731 - L1ME2 LINE L1 -370 5794 5502 2066 133 3 0 chr15 269559 269867 -85425887 - AluSp SINE Alu -4 309 1 2088 128 0 0 chr15 269890 270196 -85425558 - AluSx SINE Alu -6 306 1 282 92 0 138 chr15 270958 271045 -85424709 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 271706 271820 -85423934 + MER3 DNA MER1_type 48 163 -46 * 1117 232 3 10 chr15 271815 272125 -85423629 + MER3 DNA MER1_type 2222 2529 0 1866 118 3 70 chr15 272125 272440 -85423314 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 272461 272511 -85423243 + T-rich Low_complexity Low_complexity 5 56 0 1855 148 0 3 chr15 272545 272828 -85422926 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 273513 273543 -85422211 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 274035 274086 -85421668 - Alu SINE Alu -250 52 2 2082 125 3 0 chr15 274306 274610 -85421144 - AluSx SINE Alu -7 305 1 383 271 57 62 chr15 275672 275864 -85419890 + MIR SINE MIR 2 192 -70 294 314 139 7 chr15 276806 276943 -85418811 + MIR3 SINE MIR 31 185 -23 229 164 15 75 chr15 276950 277017 -85418737 + MER39 LTR ERV1 68 130 -577 270 180 60 0 chr15 277030 277080 -85418674 + L2 LINE L2 3217 3269 -3 516 229 141 40 chr15 278680 278890 -85416864 + MIR SINE MIR 16 252 -10 222 216 39 0 chr15 279865 279916 -85415838 + MIR SINE MIR 95 147 -61 261 83 0 0 chr15 280050 280086 -85415668 + (T)n Simple_repeat Simple_repeat 1 36 0 190 241 22 0 chr15 280415 280461 -85415293 + MIR SINE MIR 103 150 -58 1735 130 0 86 chr15 281003 281327 -85414427 + AluSx SINE Alu 2 297 -15 371 257 175 6 chr15 281340 281516 -85414238 + MIR SINE MIR 45 256 -6 943 161 0 0 chr15 282271 282426 -85413328 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 287356 287381 -85408373 + AT_rich Low_complexity Low_complexity 1 25 0 1434 191 0 0 chr15 287951 288197 -85407557 - AluJo SINE Alu -66 246 1 1842 149 10 0 chr15 288240 288541 -85407213 - AluSx SINE Alu -8 304 1 314 216 77 115 chr15 289730 289820 -85405934 - L1MC5 LINE L1 -47 7914 7822 212 77 26 0 chr15 289820 289859 -85405895 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2061 110 0 0 chr15 289863 290145 -85405609 - AluSq SINE Alu -31 282 1 314 216 77 115 chr15 290145 290415 -85405339 - L1MC5 LINE L1 -142 7819 7563 185 250 143 0 chr15 290680 290736 -85405018 + MIR SINE MIR 106 169 -93 1308 172 12 86 chr15 290991 291205 -85404549 - AluJb SINE Alu 0 302 119 1371 163 42 0 chr15 291205 291325 -85404429 + AluSp SINE Alu 1 114 -199 396 0 0 0 chr15 291325 291369 -85404385 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1371 163 42 0 chr15 291369 291531 -85404223 + AluSp SINE Alu 114 295 -18 1308 172 12 86 chr15 291531 291642 -85404112 - AluJb SINE Alu -183 119 1 1567 141 10 61 chr15 291669 291982 -85403772 + AluSp SINE Alu 1 297 -16 517 205 8 8 chr15 291993 292110 -85403644 - FLAM_C SINE Alu -16 117 1 844 85 15 0 chr15 292139 292269 -85403485 + AluSp SINE Alu 2 133 -180 1470 169 19 19 chr15 292275 292588 -85403166 + AluSp SINE Alu 1 313 0 332 167 15 0 chr15 292594 292660 -85403094 - AluJb SINE Alu -185 117 51 672 168 0 8 chr15 292691 292816 -85402938 + AluSp SINE Alu 7 130 -183 1121 113 0 59 chr15 293345 293548 -85402206 + AluSg/x SINE Alu 119 309 -1 1449 175 3 20 chr15 293560 293857 -85401897 + AluSp SINE Alu 7 298 -15 252 33 0 0 chr15 293868 293898 -85401856 - AluJb SINE Alu -185 117 88 738 220 13 48 chr15 293900 294013 -85401741 - AluJo SINE Alu -92 220 117 1634 141 0 50 chr15 294013 294332 -85401422 + AluSp SINE Alu 1 303 -10 738 220 13 48 chr15 294332 294445 -85401309 - AluJo SINE Alu -195 117 2 1843 186 49 13 chr15 294449 294836 -85400918 - LTR15 LTR ERV1 -92 401 1 233 269 60 0 chr15 295454 295521 -85400233 + L2 LINE L2 2204 2274 -1040 851 318 165 14 chr15 295697 296319 -85399435 + L2 LINE L2 2353 3068 -245 2206 74 3 7 chr15 297049 297348 -85398406 + AluY SINE Alu 1 298 -13 262 221 130 0 chr15 297365 297442 -85398312 + L1M4 LINE L1 4750 4836 -1310 669 293 25 37 chr15 297939 298260 -85397494 - L1MC4 LINE L1 -1 8041 7725 717 186 103 0 chr15 298490 298646 -85397108 - MER5A DNA MER1_type -2 187 16 2007 117 3 0 chr15 298837 299183 -85396571 + AluSx SINE Alu 1 347 0 352 248 106 33 chr15 299754 300101 -85395653 - L1P2 LINE L1 -589 5565 5174 1326 186 37 15 chr15 300210 300479 -85395275 - AluJo SINE Alu -37 275 1 790 151 68 14 chr15 301224 301370 -85394384 - MER5A DNA MER1_type -33 156 3 438 53 0 0 chr15 301756 301813 -85393941 + (TG)n Simple_repeat Simple_repeat 2 58 0 1892 132 3 10 chr15 301814 302102 -85393652 - AluSx SINE Alu -26 286 1 222 250 0 0 chr15 302626 302714 -85393040 + C-rich Low_complexity Low_complexity 2 89 0 411 301 66 0 chr15 304653 304789 -85390965 + MIR SINE MIR 48 192 -70 279 254 105 26 chr15 304926 305040 -85390714 + L2 LINE L2 3188 3310 -3 508 238 192 21 chr15 306641 306834 -85388920 + MIR SINE MIR 23 248 -14 2156 138 3 0 chr15 306973 307285 -85388469 + AluSp SINE Alu 1 313 0 226 317 195 0 chr15 307632 307755 -85387999 + MIR3 SINE MIR 53 199 -9 190 340 113 0 chr15 308097 308203 -85387551 + MER5A DNA MER1_type 24 141 -48 2375 68 0 0 chr15 308239 308556 -85387198 - AluY SINE Alu 0 317 1 523 292 0 35 chr15 308745 309239 -85386515 + GA-rich Low_complexity Low_complexity 1 476 0 350 250 150 56 chr15 309424 309993 -85385761 - L1M4 LINE L1 -3311 2835 2196 2107 102 20 23 chr15 309993 310298 -85385456 - AluSg SINE Alu 0 310 7 350 250 150 56 chr15 310298 310375 -85385379 - L1M4 LINE L1 -3950 2196 2128 1411 86 10 10 chr15 310664 310862 -85384892 + AluSg/x SINE Alu 115 312 0 767 233 87 15 chr15 310903 310993 -85384761 - AluJo SINE Alu -90 222 140 1933 125 0 20 chr15 310993 311290 -85384464 + AluSq SINE Alu 17 307 -6 767 233 87 15 chr15 311290 311405 -85384349 - AluJo SINE Alu -172 140 2 906 106 8 0 chr15 311434 311566 -85384188 + AluSp SINE Alu 1 133 -180 969 86 0 14 chr15 311709 311848 -85383906 + AluY SINE Alu 175 311 0 323 296 108 85 chr15 311974 312018 -85383736 + L1MDa LINE L1 2160 2202 -4338 2186 133 0 0 chr15 312018 312326 -85383428 + AluSx SINE Alu 1 308 -4 323 296 108 85 chr15 312326 312541 -85383213 + L1MDa LINE L1 2202 2425 -4115 1219 143 0 0 chr15 312555 312730 -85383024 + AluSg/x SINE Alu 121 295 -17 1638 191 48 18 chr15 312730 313122 -85382632 + L1MB4 LINE L1 5777 6180 0 582 212 90 59 chr15 313914 314136 -85381618 + L1MC5 LINE L1 7680 7908 -53 1886 109 4 0 chr15 314732 314989 -85380765 + AluSg SINE Alu 1 258 -52 1513 200 225 25 chr15 315000 315511 -85380243 + MER90 LTR ERV1 2 614 0 1978 169 3 3 chr15 316137 316438 -85379316 + AluJb SINE Alu 3 303 -9 274 313 23 11 chr15 316482 316627 -85379127 + L1MC3 LINE L1 6746 6873 -912 382 235 61 17 chr15 316810 316925 -85378829 + L1MC5 LINE L1 7107 7226 -735 356 286 109 11 chr15 317059 317234 -85378520 + L1MC5 LINE L1 7305 7496 -465 996 189 55 103 chr15 317241 317411 -85378343 + MLT1B LTR MaLR 4 181 -215 2343 103 7 0 chr15 317411 317713 -85378041 + AluSp SINE Alu 5 308 -5 996 189 55 103 chr15 317713 317798 -85377956 + MLT1B LTR MaLR 181 269 -127 2536 82 0 3 chr15 317798 318104 -85377650 + AluY SINE Alu 1 305 -6 996 189 55 103 chr15 318104 318262 -85377492 + MLT1B LTR MaLR 269 396 0 358 254 49 62 chr15 318267 318555 -85377199 + L1MC5 LINE L1 7494 7777 -184 204 274 333 10 chr15 319004 319106 -85376648 + L2 LINE L2 3133 3267 -5 350 274 18 0 chr15 321150 321263 -85374491 + L1ME LINE L1 348 462 -5954 226 323 51 44 chr15 321767 322026 -85373728 + L1ME LINE L1 877 1142 -5274 2456 84 7 0 chr15 322026 322334 -85373420 + AluSg SINE Alu 1 310 0 226 323 51 44 chr15 322334 322548 -85373206 + L1ME LINE L1 1142 1353 -5063 531 321 71 42 chr15 322569 322948 -85372806 + L1ME LINE L1 1228 1753 -4673 1798 128 33 56 chr15 324518 324822 -85370932 - AluSg SINE Alu -13 297 1 880 178 40 0 chr15 325147 325321 -85370433 - MER58A DNA MER1_type 0 224 44 249 124 169 11 chr15 326369 326458 -85369296 - L1ME4a LINE L1 -1 6120 6018 987 197 170 3 chr15 326580 326721 -85369033 - MER2 DNA MER2_type 0 344 228 2605 74 0 0 chr15 326721 327032 -85368722 - AluY SINE Alu 0 311 1 987 197 170 3 chr15 327032 327184 -85368570 - MER2 DNA MER2_type -116 228 2 942 138 0 80 chr15 327325 327513 -85368241 - AluSg/x SINE Alu -6 304 132 2401 88 0 0 chr15 327513 327810 -85367944 - AluY SINE Alu -12 299 3 350 258 10 0 chr15 328044 328143 -85367611 - MER5A DNA MER1_type -80 98 10 320 217 217 19 chr15 330179 330285 -85365469 + L1ME4a LINE L1 5995 6121 0 2272 86 7 13 chr15 330308 330612 -85365142 + AluSx SINE Alu 1 302 -10 2261 112 0 13 chr15 332182 332494 -85363260 - AluSg SINE Alu -2 308 1 809 141 0 0 chr15 333323 333444 -85362310 - FLAM_A SINE Alu -2 140 20 347 316 6 0 chr15 333921 334092 -85361662 + (CA)n Simple_repeat Simple_repeat 1 172 0 789 239 128 51 chr15 334921 335310 -85360444 + MLT1C LTR MaLR 3 421 -46 1414 175 80 43 chr15 335311 335723 -85360031 + MLT1C LTR MaLR 1 467 0 321 257 121 36 chr15 338772 338912 -85356842 + L1ME LINE L1 5631 5782 -339 2386 176 109 0 chr15 338914 339419 -85356335 + MER68 LTR ERV1 1 560 -2 1731 283 47 44 chr15 339427 340394 -85355360 + HERVL68 LTR ERVL 60 1117 -1920 210 183 56 0 chr15 340400 340471 -85355283 + (TA)n Simple_repeat Simple_repeat 2 76 0 198 128 0 0 chr15 340472 340511 -85355243 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1654 148 0 44 chr15 340526 340797 -85354957 - AluJb SINE Alu -31 281 23 1358 232 56 13 chr15 340930 341392 -85354362 + L1MB5 LINE L1 2613 3094 -3052 1024 199 0 5 chr15 341392 341588 -85354166 + AluJb SINE Alu 118 312 0 1479 220 71 21 chr15 341593 341732 -85354022 + L1MB5 LINE L1 3112 3243 -2903 2270 115 0 13 chr15 341732 342045 -85353709 + AluSc SINE Alu 1 309 0 1479 220 71 21 chr15 342045 342286 -85353468 + L1MB5 LINE L1 3243 3527 -2619 2456 73 0 0 chr15 342286 342586 -85353168 + AluY SINE Alu 1 300 -11 1479 220 71 21 chr15 342586 342727 -85353027 + L1MB5 LINE L1 3527 3660 -2486 3592 196 62 59 chr15 342732 343625 -85352129 + L1MB5 LINE L1 4457 5361 -813 2394 106 0 0 chr15 343625 343936 -85351818 + AluSx SINE Alu 1 311 -1 3592 196 62 59 chr15 343936 344752 -85351002 + L1MB5 LINE L1 5361 6174 0 22 0 0 0 chr15 347182 347204 -85348550 + AT_rich Low_complexity Low_complexity 1 22 0 961 254 53 22 chr15 347374 347697 -85348057 - MER58B DNA MER1_type -5 336 4 2135 219 75 39 chr15 347851 348435 -85347319 + MER77 LTR ERV1 1 605 0 2400 85 3 0 chr15 348898 349192 -85346562 + AluSc SINE Alu 1 295 -14 286 239 119 15 chr15 351053 351187 -85344567 + MIR SINE MIR 21 168 -94 403 287 167 7 chr15 351218 351368 -85344386 + MER5A DNA MER1_type 1 174 -15 404 264 64 0 chr15 352213 352338 -85343416 + MIR3 SINE MIR 42 174 -34 274 354 28 21 chr15 353553 353697 -85342057 + L2 LINE L2 2250 2394 -920 309 304 59 59 chr15 354545 354749 -85341005 - MLT1L LTR MaLR -407 208 5 466 244 47 17 chr15 355899 356071 -85339683 + L1ME2 LINE L1 5986 6162 -2 1828 142 49 14 chr15 356091 356379 -85339375 + AluSx SINE Alu 1 298 -14 1980 95 106 0 chr15 357007 357271 -85338483 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 357284 357311 -85338443 + AT_rich Low_complexity Low_complexity 1 27 0 247 367 61 0 chr15 360638 360736 -85335018 + L2 LINE L2 3168 3271 -1 2347 92 7 0 chr15 361172 361465 -85334289 - AluSq SINE Alu -18 295 1 2001 163 0 0 chr15 361474 361763 -85333991 - AluJb SINE Alu -23 289 1 300 257 64 36 chr15 363696 363836 -85331918 + L1M4 LINE L1 2475 2618 -3528 530 216 25 133 chr15 363868 364229 -85331525 + L1M4 LINE L1 2728 3049 -3097 339 214 32 97 chr15 364283 364437 -85331317 + L1MC5 LINE L1 6957 7100 -861 461 297 46 55 chr15 364605 365043 -85330711 + L1MC5 LINE L1 7317 7750 -211 261 57 0 0 chr15 367535 367570 -85328184 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 971 169 0 18 chr15 368695 368861 -85326893 - 7SLRNA srpRNA srpRNA -63 257 95 251 254 197 8 chr15 369567 369689 -85326065 - MIR SINE MIR -70 192 48 1984 141 0 33 chr15 369706 370012 -85325742 - AluSx SINE Alu -15 297 2 181 250 231 0 chr15 371447 371499 -85324255 - MIR SINE MIR -111 151 88 228 216 39 0 chr15 372598 372649 -85323105 - MIR SINE MIR -61 147 95 181 250 231 0 chr15 372986 373038 -85322716 - MIR SINE MIR -111 151 88 307 218 40 89 chr15 373794 373864 -85321890 - L1MC4a LINE L1 -1806 6002 5939 282 56 0 0 chr15 373864 373900 -85321854 + (CA)n Simple_repeat Simple_repeat 2 37 0 307 218 40 89 chr15 373900 373953 -85321801 - L1MC4a LINE L1 -1869 5939 5885 182 284 102 11 chr15 373983 374071 -85321683 - MIR3 SINE MIR -106 102 7 327 278 70 17 chr15 375229 375344 -85320410 - L2 LINE L2 -5 3308 3188 295 336 131 0 chr15 375364 375501 -85320253 - MIR3 SINE MIR -23 185 31 180 241 133 48 chr15 376046 376129 -85319625 - L2 LINE L2 -490 2824 2735 355 269 62 46 chr15 376479 376589 -85319165 - MIR SINE MIR -115 147 33 2309 97 7 3 chr15 376589 376887 -85318867 - AluY SINE Alu -12 299 1 355 269 62 46 chr15 376887 376906 -85318848 - MIR SINE MIR -229 33 16 211 259 0 19 chr15 379198 379252 -85316502 + (TG)n Simple_repeat Simple_repeat 2 54 0 2064 125 7 0 chr15 379571 379851 -85315903 + AluY SINE Alu 1 282 -29 33 0 0 0 chr15 379866 379899 -85315855 + AT_rich Low_complexity Low_complexity 1 33 0 589 294 230 38 chr15 379914 380330 -85315424 + L1M4 LINE L1 2908 3243 -2903 2500 59 7 13 chr15 380330 380635 -85315119 - AluY SINE Alu -8 303 1 589 294 230 38 chr15 380635 380766 -85314988 + L1M4 LINE L1 3243 3348 -2798 981 203 37 28 chr15 380766 380983 -85314771 - MER20 DNA MER1_type 0 219 1 589 294 230 38 chr15 380983 381144 -85314610 + L1M4 LINE L1 3348 3753 -2393 468 306 81 78 chr15 381367 381775 -85313979 + HAL1 LINE L1 43 451 -2056 1986 143 19 26 chr15 381938 382246 -85313508 - AluJo SINE Alu -2 310 5 2349 117 0 0 chr15 382315 382623 -85313131 + AluSp SINE Alu 1 308 -5 618 253 111 15 chr15 382641 382839 -85312915 + HAL1 LINE L1 854 1070 -1437 432 254 112 87 chr15 382857 383381 -85312373 + MLT1H1 LTR MaLR 19 555 0 863 249 127 31 chr15 383382 383895 -85311859 + HAL1 LINE L1 1069 1630 -877 254 224 0 0 chr15 383925 383974 -85311780 - MIR SINE MIR -30 232 184 351 0 0 0 chr15 383986 384025 -85311729 + (CA)n Simple_repeat Simple_repeat 2 40 0 318 148 0 0 chr15 385272 385326 -85310428 + (A)n Simple_repeat Simple_repeat 1 54 0 2334 67 37 3 chr15 385330 385627 -85310127 + AluY SINE Alu 5 311 0 1284 140 189 53 chr15 386427 386499 -85309255 - MER47A DNA MER2_type -1957 366 305 2177 108 3 7 chr15 386499 386787 -85308967 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr15 386791 386814 -85308940 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1284 140 189 53 chr15 386814 387058 -85308696 - MER47A DNA MER2_type -2020 303 1 315 275 18 37 chr15 387520 387629 -85308125 - MER5C DNA MER1_type -200 124 18 436 194 21 0 chr15 387675 387768 -85307986 + MER103 DNA DNA 51 145 -21 2454 78 0 0 chr15 388366 388660 -85307094 + AluY SINE Alu 1 294 -17 260 364 0 68 chr15 388690 388822 -85306932 - MIR SINE MIR -62 146 24 293 215 31 0 chr15 389057 389122 -85306632 + MLT1K LTR MaLR 483 549 -39 184 373 45 22 chr15 389132 389266 -85306488 + L2 LINE L2 2772 2908 -406 1844 102 82 0 chr15 389276 389532 -85306222 - AluSq SINE Alu -2 311 35 215 323 162 35 chr15 389719 389917 -85305837 + L2 LINE L2 3045 3267 -5 512 272 35 99 chr15 390290 390405 -85305349 + MIR SINE MIR 25 123 -139 1739 113 4 0 chr15 390405 390635 -85305119 + AluSx SINE Alu 58 288 -24 512 272 35 99 chr15 390635 390721 -85305033 + MIR SINE MIR 123 213 -49 279 243 307 21 chr15 390924 391064 -85304690 - L2 LINE L2 -20 3293 3114 1445 156 91 4 chr15 391409 391652 -85304102 - AluSx SINE Alu 0 312 49 7198 90 13 21 chr15 391652 392717 -85303037 + MER11C LTR ERVK 1 1057 -14 335 167 0 0 chr15 392734 392788 -85302966 - AluSx SINE Alu -248 54 1 316 303 69 27 chr15 392821 393094 -85302660 - L1ME3 LINE L1 -206 5915 5650 270 291 112 8 chr15 393151 393394 -85302360 - L1ME3 LINE L1 -769 5395 5257 350 233 124 30 chr15 393502 393656 -85302098 + L1MC4a LINE L1 5722 5901 -1907 1426 172 26 63 chr15 393656 393959 -85301795 + AluJb SINE Alu 1 292 -20 350 233 124 30 chr15 393959 394006 -85301748 + L1MC4a LINE L1 5901 5942 -1866 929 131 24 42 chr15 394007 394175 -85301579 - AluSp SINE Alu -121 192 28 2290 164 38 19 chr15 394176 394652 -85301102 + LTR15 LTR ERV1 2 486 -7 229 139 0 23 chr15 394678 394721 -85301033 - AluSp SINE Alu -260 42 1 585 176 9 9 chr15 394750 394858 -85300896 + FLAM_C SINE Alu 2 109 -34 1611 155 3 50 chr15 394865 395187 -85300567 - AluSp SINE Alu 0 313 7 790 224 13 53 chr15 395222 395336 -85300418 + AluJb SINE Alu 2 104 -208 1678 162 7 13 chr15 395336 395645 -85300109 - AluSp SINE Alu -6 307 1 790 224 13 53 chr15 395645 395758 -85299996 + AluJb SINE Alu 104 220 -92 1069 155 16 0 chr15 395794 395987 -85299767 - AluSq SINE Alu 0 313 118 367 268 87 52 chr15 396111 396187 -85299567 + L1M4 LINE L1 3602 3674 -2472 2460 82 0 7 chr15 396187 396492 -85299262 + AluY SINE Alu 5 307 -4 367 268 87 52 chr15 396492 396784 -85298970 + L1M4 LINE L1 3674 3983 -2163 2115 124 3 22 chr15 396860 397175 -85298579 + AluSg SINE Alu 1 309 -1 6723 67 7 70 chr15 397531 398956 -85296798 + SVA Other Other 339 1402 0 28 48 0 0 chr15 398975 399017 -85296737 + AT_rich Low_complexity Low_complexity 1 42 0 377 311 137 58 chr15 400827 401093 -85294661 + L1M4 LINE L1 3104 3410 -2736 2568 55 0 16 chr15 401093 401403 -85294351 - AluY SINE Alu -6 305 1 377 311 137 58 chr15 401403 401515 -85294239 + L1M4 LINE L1 3410 3512 -2634 898 221 37 28 chr15 401533 401750 -85294004 - MER20 DNA MER1_type 0 219 1 495 297 83 81 chr15 402138 402546 -85293208 + HAL1 LINE L1 43 451 -2056 2038 144 3 26 chr15 402709 403022 -85292732 - AluJo SINE Alu -2 310 5 2170 138 3 0 chr15 403091 403396 -85292358 + AluSp SINE Alu 1 306 -7 229 234 127 25 chr15 403414 403611 -85292143 + HAL1 LINE L1 854 1070 -1437 455 254 114 89 chr15 403629 404153 -85291601 + MLT1H1 LTR MaLR 19 555 0 940 256 125 27 chr15 404154 404666 -85291088 + HAL1 LINE L1 1069 1630 -877 273 204 0 0 chr15 404696 404745 -85291009 - MIR SINE MIR -30 232 184 243 0 0 0 chr15 404757 404784 -85290970 + (CA)n Simple_repeat Simple_repeat 2 28 0 2020 116 32 0 chr15 404913 405197 -85290557 + AluSx SINE Alu 1 293 -19 2341 81 0 0 chr15 405877 406174 -85289580 + AluY SINE Alu 1 297 -14 235 319 8 34 chr15 406285 406404 -85289350 + CT-rich Low_complexity Low_complexity 6 121 0 21 0 0 0 chr15 407254 407275 -85288479 + AT_rich Low_complexity Low_complexity 1 21 0 2083 124 13 0 chr15 407468 407766 -85287988 - AluSg SINE Alu -6 304 3 1795 142 68 0 chr15 407926 408080 -85287674 - AluSx SINE Alu -12 300 158 1632 90 14 0 chr15 408080 408291 -85287463 - AluSg SINE Alu -85 225 12 1795 142 68 0 chr15 408291 408417 -85287337 - AluSx SINE Alu -154 158 1 904 144 0 0 chr15 408420 408552 -85287202 - FLAM_C SINE Alu -11 132 1 833 221 47 35 chr15 408957 409215 -85286539 - MER58B DNA MER1_type -1 340 80 497 171 83 138 chr15 409445 409548 -85286206 - L1MC5 LINE L1 -44 7917 7810 2133 141 0 0 chr15 409548 409861 -85285893 - AluSq SINE Alu 0 313 1 497 171 83 138 chr15 409861 410084 -85285670 - L1MC5 LINE L1 -151 7810 7609 184 226 113 0 chr15 410400 410453 -85285301 + MIR SINE MIR 111 169 -93 1206 171 6 99 chr15 410707 410939 -85284815 - AluJb SINE Alu 0 312 121 1641 141 6 32 chr15 410939 411252 -85284502 + AluSp SINE Alu 1 305 -8 1206 171 6 99 chr15 411252 411363 -85284391 - AluJb SINE Alu -191 121 1 1677 132 9 60 chr15 411390 411708 -85284046 + AluSp SINE Alu 1 302 -11 576 181 9 9 chr15 411709 411825 -85283929 - AluJb SINE Alu -195 117 2 885 84 15 0 chr15 411854 411985 -85283769 + AluSp SINE Alu 1 133 -180 1559 152 17 20 chr15 411993 412290 -85283464 + AluSp SINE Alu 1 296 -17 541 184 74 84 chr15 412308 412378 -85283376 - AluJb SINE Alu -123 189 120 1423 142 13 58 chr15 412378 412689 -85283065 + AluSp SINE Alu 1 297 -16 541 184 74 84 chr15 412689 412808 -85282946 - AluJb SINE Alu -192 120 2 818 109 0 23 chr15 412837 412965 -85282789 + AluSp SINE Alu 1 125 -188 770 181 126 85 chr15 412977 413131 -85282623 - AluJb SINE Alu -30 282 111 1517 157 13 47 chr15 413131 413431 -85282323 + AluSp SINE Alu 7 296 -17 770 181 126 85 chr15 413431 413546 -85282208 - AluJb SINE Alu -201 111 2 1602 176 37 7 chr15 413612 413907 -85281847 - LTR15 LTR ERV1 -6 487 184 833 172 32 0 chr15 413907 414064 -85281690 + AluSq SINE Alu 132 293 -20 331 179 0 0 chr15 414067 414123 -85281631 - FLAM_A SINE Alu -20 113 58 1984 36 0 59 chr15 414732 414985 -85280769 + AluY SINE Alu 60 297 -14 1372 156 5 0 chr15 415625 415830 -85279924 - L1MC1 LINE L1 -6 6327 6122 1036 183 0 0 chr15 415936 416111 -85279643 + FRAM SINE Alu 1 174 -2 1906 63 20 4 chr15 418044 418296 -85277458 + AluY SINE Alu 46 301 -10 2389 52 0 23 chr15 419221 419529 -85276225 + AluY SINE Alu 1 301 -10 2173 94 0 13 chr15 420163 420470 -85275284 - AluY SINE Alu -8 303 1 2580 68 0 0 chr15 421204 421514 -85274240 + AluY SINE Alu 1 310 -1 21 0 0 0 chr15 421527 421548 -85274206 + AT_rich Low_complexity Low_complexity 1 21 0 312 293 146 15 chr15 422131 422153 -85273601 - L1ME3 LINE L1 -1 6163 6145 1959 213 30 34 chr15 422153 422622 -85273132 + MLT1C LTR MaLR 1 467 0 312 293 146 15 chr15 422622 422831 -85272923 - L1ME3 LINE L1 -19 6145 5910 522 266 92 14 chr15 422847 423065 -85272689 - L1ME3 LINE L1 -325 5837 5603 1548 262 50 56 chr15 423100 423219 -85272535 - L1ME3 LINE L1 0 6231 6113 2265 111 0 0 chr15 423219 423516 -85272238 + AluSq SINE Alu 1 297 -16 1548 262 50 56 chr15 423516 424059 -85271695 - L1ME3 LINE L1 -118 6113 5573 2104 102 30 13 chr15 424157 424461 -85271293 - AluSg SINE Alu -1 309 1 26 50 0 0 chr15 424469 424509 -85271245 + AT_rich Low_complexity Low_complexity 1 40 0 367 282 44 52 chr15 424796 425140 -85270614 - L1ME3 LINE L1 -2421 3794 3454 * 422 315 127 20 chr15 425123 425729 -85270025 - L1ME3 LINE L1 -4616 1780 1110 2268 109 3 0 chr15 426897 427201 -85268553 - AluSc SINE Alu -2 307 3 717 246 182 0 chr15 429106 429293 -85266461 - MER58A DNA MER1_type 0 224 4 212 222 0 16 chr15 429858 429921 -85265833 + CT-rich Low_complexity Low_complexity 1 62 0 919 248 127 74 chr15 430089 430611 -85265143 - MLT1F1 LTR MaLR -2 565 15 2477 44 7 3 chr15 432204 432500 -85263254 + AluY SINE Alu 1 297 -14 1079 133 0 76 chr15 433568 433778 -85261976 - AluSq SINE Alu -119 194 1 2215 77 18 3 chr15 434071 434357 -85261397 - AluY SINE Alu -21 290 1 183 42 0 0 chr15 434885 434909 -85260845 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1245 181 96 22 chr15 436647 436918 -85258836 + AluJo SINE Alu 5 295 -17 2657 115 3 16 chr15 437525 437891 -85257863 + THE1B LTR MaLR 2 362 -2 23 0 0 0 chr15 438023 438046 -85257708 + AT_rich Low_complexity Low_complexity 1 23 0 3773 104 28 4 chr15 438331 438830 -85256924 + MER9 LTR ERVK 1 511 0 1530 237 101 47 chr15 439009 439751 -85256003 + L1M4 LINE L1 3670 4451 -1695 1246 136 0 0 chr15 439756 439932 -85255822 - AluJb SINE Alu -131 181 6 863 74 57 0 chr15 439975 440097 -85255657 + L1MA5 LINE L1 6172 6300 0 1126 69 0 21 chr15 441775 441919 -85253835 - AluSq SINE Alu -20 293 153 400 248 85 50 chr15 441929 442070 -85253684 - MIR SINE MIR -111 151 6 1577 173 118 7 chr15 442433 442705 -85253049 - AluJb SINE Alu 0 302 1 2146 132 0 0 chr15 442814 443118 -85252636 + AluSx SINE Alu 1 304 -8 2155 124 0 0 chr15 443396 443694 -85252060 + AluSx SINE Alu 3 300 -12 234 216 0 20 chr15 443694 443745 -85252009 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 443784 443827 -85251927 + AT_rich Low_complexity Low_complexity 1 43 0 21 82 0 0 chr15 444178 444227 -85251527 + AT_rich Low_complexity Low_complexity 1 49 0 282 154 77 0 chr15 444229 444281 -85251473 - L1ME4a LINE L1 -72 6049 5994 237 275 7 14 chr15 444291 444433 -85251321 + (TA)n Simple_repeat Simple_repeat 2 142 0 2210 109 3 6 chr15 444521 444832 -85250922 + AluSx SINE Alu 1 310 -2 345 211 225 14 chr15 444832 444974 -85250780 - L1ME4a LINE L1 -303 5818 5647 331 186 100 0 chr15 444978 445048 -85250706 - L1ME4a LINE L1 -518 5603 5527 1106 268 148 21 chr15 445317 446324 -85249430 + L1ME4a LINE L1 4409 5543 -746 2364 98 0 3 chr15 446329 446635 -85249119 - AluSx SINE Alu -7 305 1 491 247 184 80 chr15 446769 447008 -85248746 + L1ME4a LINE L1 5602 5815 -306 583 138 0 0 chr15 447008 447095 -85248659 + L1MA3 LINE L1 6219 6305 0 491 247 184 80 chr15 447095 447218 -85248536 + L1ME4a LINE L1 5815 5924 -197 2075 98 0 86 chr15 447218 447545 -85248209 - AluSx SINE Alu -13 299 1 491 247 184 80 chr15 447545 447642 -85248112 + L1ME4a LINE L1 5924 6110 -11 1732 183 8 80 chr15 448164 448564 -85247190 + MLT1A2 LTR MaLR 4 374 0 1432 129 67 21 chr15 448892 449132 -85246622 + L1PB4 LINE L1 5905 6155 -1 2490 71 0 0 chr15 449141 449450 -85246304 + AluY SINE Alu 1 309 -2 23 0 0 0 chr15 449672 449695 -85246059 + AT_rich Low_complexity Low_complexity 1 23 0 364 322 104 13 chr15 449799 450175 -85245579 - L1ME4a LINE L1 -3 6118 5709 408 323 47 58 chr15 450181 450695 -85245059 + L2 LINE L2 2766 3267 -5 1978 141 33 39 chr15 451369 451731 -85244023 + MLT1A1 LTR MaLR 6 365 0 3537 164 98 1 chr15 451771 452455 -85243299 + L1MB7 LINE L1 5377 6126 -58 335 229 21 31 chr15 452472 452568 -85243186 + L1MC4 LINE L1 6609 6703 -1339 * 347 250 23 0 chr15 452534 452622 -85243132 - L1MC4 LINE L1 -1339 6703 6614 251 245 0 43 chr15 452633 452727 -85243027 + L1MC4 LINE L1 6614 6703 -1339 348 253 0 53 chr15 452729 452824 -85242930 - L1MC4 LINE L1 -1339 6703 6614 2307 92 0 19 chr15 452877 453192 -85242562 + AluSp SINE Alu 1 309 -4 2096 121 17 10 chr15 453681 453979 -85241775 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr15 454069 454097 -85241657 + AT_rich Low_complexity Low_complexity 1 28 0 702 216 8 8 chr15 454109 454234 -85241520 + FLAM_C SINE Alu 3 127 -16 24 0 0 0 chr15 454336 454360 -85241394 + AT_rich Low_complexity Low_complexity 1 24 0 335 237 127 69 chr15 454687 454805 -85240949 + L1ME4a LINE L1 5743 5876 -245 2285 92 3 0 chr15 454805 455098 -85240656 + AluSp SINE Alu 1 294 -19 335 237 127 69 chr15 455098 455152 -85240602 + L1ME4a LINE L1 5876 5925 -196 2124 92 10 0 chr15 455271 455565 -85240189 + AluY SINE Alu 1 297 -14 26 30 0 0 chr15 456133 456166 -85239588 + AT_rich Low_complexity Low_complexity 1 33 0 977 61 0 0 chr15 458328 458442 -85237312 + AluY SINE Alu 1 114 -197 2344 89 0 3 chr15 458816 459119 -85236635 - AluSq SINE Alu -11 302 1 327 217 86 57 chr15 459121 459296 -85236458 + L1MC4a LINE L1 5703 5882 -1926 1837 146 4 0 chr15 460789 461064 -85234690 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 461066 461133 -85234621 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 461155 461180 -85234574 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4478 221 54 54 chr15 461180 461989 -85233765 + L1MDa LINE L1 1483 2290 -4250 1734 161 83 9 chr15 461989 462325 -85233429 - MER46B DNA MER2_type 0 236 1 4478 221 54 54 chr15 462325 462758 -85232996 + L1MDa LINE L1 2290 2721 -3819 2102 110 28 7 chr15 462758 463049 -85232705 + AluSq SINE Alu 1 297 -16 4478 221 54 54 chr15 463049 464751 -85231003 + L1MDa LINE L1 2721 4422 -2118 357 285 89 0 chr15 465664 465787 -85229967 - MIR SINE MIR 0 262 129 2279 101 7 3 chr15 465820 466126 -85229628 - AluY SINE Alu -4 307 1 1867 96 15 33 chr15 466381 466653 -85229101 + AluSp SINE Alu 34 300 -13 2008 118 0 36 chr15 466655 466960 -85228794 + AluSq SINE Alu 1 294 -19 358 302 42 28 chr15 466993 467205 -85228549 + L1MEc LINE L1 1850 2064 -4332 772 258 144 25 chr15 467214 467582 -85228172 + L1MEc LINE L1 2215 2626 -3589 416 172 0 0 chr15 468275 468339 -85227415 - AluSq SINE Alu -15 297 234 1251 126 0 0 chr15 468339 468506 -85227248 - AluSq SINE Alu -146 167 1 2137 203 69 19 chr15 468506 469072 -85226682 + L1MEc LINE L1 2752 3345 -2870 262 350 34 0 chr15 469095 469212 -85226542 - MIR SINE MIR -1 261 141 867 184 0 13 chr15 469220 469372 -85226382 - FRAM SINE Alu -21 155 6 1333 108 0 0 chr15 469748 469924 -85225830 + AluY SINE Alu 131 306 -5 2193 110 3 13 chr15 469933 470241 -85225513 + AluSq SINE Alu 1 305 -8 1532 155 43 18 chr15 470242 470520 -85225234 + L1MB3 LINE L1 5324 5608 -572 648 237 0 0 chr15 470521 470639 -85225115 + FLAM_C SINE Alu 2 119 -24 660 137 0 0 chr15 470649 470751 -85225003 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 470751 470783 -85224971 + AT_rich Low_complexity Low_complexity 1 32 0 2430 86 0 0 chr15 471195 471496 -85224258 + AluY SINE Alu 1 301 -10 458 226 73 7 chr15 472069 472206 -85223548 - MER21B LTR ERV1 -57 806 661 588 246 17 17 chr15 472213 472392 -85223362 + L1MDa LINE L1 1541 1719 -4821 2027 169 120 2 chr15 472437 472862 -85222892 + LTR53 LTR ERVL 5 479 -40 812 209 65 13 chr15 472935 473165 -85222589 + L1ME3 LINE L1 5323 5564 -2221 297 0 0 0 chr15 473275 473308 -85222446 + (TG)n Simple_repeat Simple_repeat 1 33 0 233 269 0 0 chr15 473314 473366 -85222388 + MER58B DNA MER1_type 13 64 -277 1627 87 8 75 chr15 473411 473663 -85222091 - AluSx SINE Alu -77 235 1 972 209 42 35 chr15 473669 473928 -85221826 + MER58B DNA MER1_type 80 340 -1 1932 140 13 13 chr15 474159 474459 -85221295 + AluSg1 SINE Alu 1 300 -9 854 223 118 28 chr15 475523 475810 -85219944 + L1ME2 LINE L1 5851 6163 -1 342 0 0 0 chr15 475963 476001 -85219753 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr15 476014 476042 -85219712 + AT_rich Low_complexity Low_complexity 1 28 0 436 314 147 17 chr15 476978 477060 -85218694 + L1MC4a LINE L1 5856 5926 -1882 1961 133 3 7 chr15 477060 477368 -85218386 + AluSq SINE Alu 1 307 -6 436 314 147 17 chr15 477368 477632 -85218122 + L1MC4a LINE L1 5926 6247 -1561 2115 134 3 6 chr15 477821 478134 -85217620 + AluSx SINE Alu 1 312 0 482 270 138 6 chr15 478226 478385 -85217369 + L1MD3 LINE L1 6663 6842 -1153 2381 109 0 0 chr15 478418 478729 -85217025 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr15 478762 478784 -85216970 + AT_rich Low_complexity Low_complexity 1 22 0 1513 115 5 0 chr15 479057 479265 -85216489 - AluSc SINE Alu -17 292 84 2599 56 0 0 chr15 480364 480666 -85215088 - AluY SINE Alu -9 302 1 244 263 62 0 chr15 480815 480895 -85214859 + L1ME3 LINE L1 5550 5634 -536 664 256 84 9 chr15 480898 481113 -85214641 + L1ME3 LINE L1 5733 5963 -199 21 36 0 0 chr15 481214 481242 -85214512 + AT_rich Low_complexity Low_complexity 1 28 0 234 225 122 27 chr15 482266 482399 -85213355 + MIR SINE MIR 52 203 -59 2079 137 0 0 chr15 482454 482761 -85212993 + AluSx SINE Alu 1 307 -5 2376 71 0 19 chr15 483114 483424 -85212330 - AluY SINE Alu -7 304 1 218 122 0 41 chr15 484674 484723 -85211031 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 993 220 114 32 chr15 485002 485379 -85210375 + LTR37A LTR ERV1 19 426 0 420 20 0 0 chr15 486073 486122 -85209632 + (TA)n Simple_repeat Simple_repeat 2 50 0 2182 102 0 30 chr15 486385 486688 -85209066 - AluY SINE Alu -13 298 5 306 125 0 0 chr15 486692 486740 -85209014 + (T)n Simple_repeat Simple_repeat 1 48 0 205 180 49 0 chr15 487261 487322 -85208432 + (TAA)n Simple_repeat Simple_repeat 3 66 0 28 0 0 0 chr15 487599 487627 -85208127 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 487883 487928 -85207826 + AT_rich Low_complexity Low_complexity 1 45 0 185 232 143 0 chr15 489055 489111 -85206643 + MIR SINE MIR 106 169 -93 1406 155 12 81 chr15 489370 489587 -85206167 - AluJo SINE Alu 0 312 124 1688 116 23 76 chr15 489587 489889 -85205865 + AluSp SINE Alu 2 287 -26 1406 155 12 81 chr15 489889 490006 -85205748 - AluJo SINE Alu -188 124 1 1749 144 13 16 chr15 490040 490346 -85205408 + AluSp SINE Alu 5 309 -4 616 179 18 9 chr15 490346 490458 -85205296 - AluJb SINE Alu -198 114 2 815 133 23 0 chr15 490489 490617 -85205137 + AluSp SINE Alu 3 133 -180 1761 147 13 19 chr15 490622 490935 -85204819 + AluSp SINE Alu 1 311 -2 685 131 9 9 chr15 490941 491048 -85204706 - AluJb SINE Alu -204 108 2 1739 145 30 13 chr15 491078 491382 -85204372 + AluSp SINE Alu 2 310 -3 372 97 194 0 chr15 491384 491456 -85204298 - AluJb SINE Alu -193 109 24 1633 218 128 2 chr15 491457 491870 -85203884 + MLT2B1 LTR ERVL 1 465 -55 1182 117 6 0 chr15 491870 492041 -85203713 + L1PA11 LINE L1 5771 5942 -232 1642 216 90 38 chr15 492044 492488 -85203266 + MLT1D LTR MaLR 39 505 0 1870 195 23 21 chr15 493087 493472 -85202282 - L1MB2 LINE L1 -8 6163 5778 315 0 0 0 chr15 493472 493507 -85202247 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 886 168 14 0 chr15 493507 493650 -85202104 - AluJb SINE Alu -30 282 138 1735 153 19 16 chr15 494133 494441 -85201313 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 497467 497500 -85198254 + AT_rich Low_complexity Low_complexity 1 33 0 576 204 138 13 chr15 497543 497695 -85198059 - MIR SINE MIR -64 198 28 2034 109 13 33 chr15 497848 498151 -85197603 - AluSx SINE Alu -13 299 3 2057 141 0 0 chr15 498516 498815 -85196939 - AluSx SINE Alu -13 299 1 2401 92 0 0 chr15 499184 499488 -85196266 - AluSg SINE Alu -2 308 5 2213 262 96 10 chr15 499502 500277 -85195477 - L1ME1 LINE L1 -3 6163 5323 630 171 49 0 chr15 500353 500476 -85195278 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 500802 500835 -85194919 + AT_rich Low_complexity Low_complexity 1 33 0 2704 160 86 0 chr15 500835 501359 -85194395 - L1MB3 LINE L1 -8 6175 5607 2167 92 7 3 chr15 501365 501657 -85194097 - AluY SINE Alu -18 293 1 909 157 0 0 chr15 501699 501833 -85193921 - FRAM SINE Alu -25 151 18 657 218 46 6 chr15 502708 502882 -85192872 + L1ME2 LINE L1 5982 6162 -2 2220 110 3 0 chr15 502902 503202 -85192552 + AluSx SINE Alu 1 301 -11 874 160 17 66 chr15 503842 504023 -85191731 - AluSg/x SINE Alu -13 297 126 351 280 0 24 chr15 504367 504492 -85191262 + CT-rich Low_complexity Low_complexity 3 124 0 507 291 0 7 chr15 504526 505197 -85190557 + CT-rich Low_complexity Low_complexity 1 666 0 283 325 195 0 chr15 505851 505974 -85189780 - MIR3 SINE MIR -9 199 53 1344 97 0 0 chr15 506314 506490 -85189264 - AluSp SINE Alu -2 311 136 540 254 179 20 chr15 506625 506826 -85188928 - MIR SINE MIR -10 252 20 363 44 0 0 chr15 507020 507065 -85188689 + (CA)n Simple_repeat Simple_repeat 2 46 0 227 192 19 0 chr15 507069 507121 -85188633 - L1MC/D LINE L1 -1871 5937 5885 268 265 68 26 chr15 508454 508571 -85187183 - L2 LINE L2 -5 3308 3187 195 282 176 0 chr15 508568 508653 -85187101 - MIR3 SINE MIR 0 208 109 * 7247 39 0 0 chr15 508917 509862 -85185892 - L1PA4 LINE L1 -3 6152 5209 195 42 0 0 chr15 512143 512167 -85183587 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr15 512441 512467 -85183287 + AT_rich Low_complexity Low_complexity 1 26 0 655 218 69 55 chr15 514929 515131 -85180623 + MIR SINE MIR 58 262 0 25 0 0 0 chr15 515804 515829 -85179925 + AT_rich Low_complexity Low_complexity 1 25 0 2007 128 0 34 chr15 515829 516126 -85179628 - AluSx SINE Alu -25 287 1 207 0 0 0 chr15 516949 516972 -85178782 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 98 0 54 chr15 518032 518348 -85177406 + AluSg SINE Alu 1 299 -11 29 0 0 0 chr15 518733 518762 -85176992 + AT_rich Low_complexity Low_complexity 1 29 0 2017 141 0 7 chr15 518784 519083 -85176671 - AluSx SINE Alu -15 297 1 189 121 0 0 chr15 521100 521133 -85174621 + (TG)n Simple_repeat Simple_repeat 2 34 0 2371 64 0 0 chr15 521390 521699 -85174055 + AluY SINE Alu 1 309 0 902 209 43 2 chr15 522370 522576 -85173178 - MIR SINE MIR -21 241 31 2156 107 3 0 chr15 522578 522876 -85172878 - AluSx SINE Alu -13 299 1 189 171 0 0 chr15 523760 523795 -85171959 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1681 139 9 89 chr15 523796 524133 -85171621 - AluJo SINE Alu -2 310 1 2515 194 79 70 chr15 524141 525022 -85170732 - L1ME1 LINE L1 -65 6101 5223 2557 113 32 32 chr15 525022 525456 -85170298 - Tigger2a DNA MER2_type 0 434 1 2515 194 79 70 chr15 525456 525487 -85170267 - L1ME1 LINE L1 -943 5223 5194 2240 102 3 0 chr15 526024 526318 -85169436 - AluSx SINE Alu -12 300 6 24 0 0 0 chr15 526497 526521 -85169233 + AT_rich Low_complexity Low_complexity 1 24 0 417 241 7 0 chr15 527155 527296 -85168458 - L1MEd LINE L1 -5279 840 699 1020 199 80 4 chr15 527319 527545 -85168209 - L1MD3 LINE L1 -24 7971 7729 385 248 35 0 chr15 527543 527656 -85168098 - L1MEd LINE L1 -5405 714 598 * 302 269 38 17 chr15 528063 528240 -85167514 + MER58C DNA MER1_type 9 206 -9 1884 166 0 0 chr15 529149 529459 -85166295 - AluJb SINE Alu 0 310 1 242 413 51 22 chr15 531022 531160 -85164594 - L2 LINE L2 -22 3250 3109 364 279 36 36 chr15 532479 532590 -85163164 + MER91A DNA MER1_type 66 176 -20 229 266 142 9 chr15 532831 532944 -85162810 - L2 LINE L2 -1 3312 3185 2294 75 0 4 chr15 533057 533361 -85162393 - AluSc SINE Alu 0 303 1 967 198 81 102 chr15 533438 533772 -85161982 + MER58B DNA MER1_type 5 331 -10 447 290 92 22 chr15 533785 534026 -85161728 + L2 LINE L2 2770 3037 -276 440 319 81 0 chr15 534745 534905 -85160849 - MIR SINE MIR -17 245 73 244 167 10 83 chr15 535102 535198 -85160556 - L1MC4a LINE L1 -1749 6059 5971 379 211 29 0 chr15 535279 535383 -85160371 - L1MC4a LINE L1 -1853 5955 5849 215 250 15 0 chr15 535577 535645 -85160109 + CT-rich Low_complexity Low_complexity 4 72 0 1614 169 59 10 chr15 536160 536450 -85159304 - AluJb SINE Alu -8 304 1 260 296 9 28 chr15 536534 536642 -85159112 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 729 282 55 35 chr15 536720 536975 -85158779 + MIR SINE MIR 3 262 0 2586 46 0 0 chr15 537609 537911 -85157843 - AluY SINE Alu -8 303 2 6803 32 7 3 chr15 539507 540374 -85155380 - L1PA4 LINE L1 -2 6153 5284 2023 126 11 52 chr15 541295 541643 -85154111 + MER1B DNA MER1_type 3 336 -1 319 278 97 72 chr15 541830 542261 -85153493 + HAL1b LINE L1 70 511 -837 1918 95 103 0 chr15 542579 542841 -85152913 - AluSx SINE Alu -23 289 1 315 289 123 54 chr15 542884 543586 -85152168 + L1MC/D LINE L1 3663 4412 -1734 722 205 26 19 chr15 543824 543980 -85151774 + FAM SINE Alu 2 158 -17 2509 61 0 0 chr15 544014 544309 -85151445 + AluY SINE Alu 1 295 -16 388 274 139 30 chr15 544369 544570 -85151184 + L1MC/D LINE L1 4624 4846 -1300 441 249 83 28 chr15 544895 545112 -85150642 + L1MC/D LINE L1 5254 5482 -2326 189 308 218 38 chr15 545236 545369 -85150385 + L2 LINE L2 2595 2751 -563 263 244 126 0 chr15 545434 545569 -85150185 + MER103 DNA DNA 13 164 -2 181 373 42 0 chr15 545982 546100 -85149654 - MIR SINE MIR -26 236 114 282 29 0 0 chr15 546553 546588 -85149166 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2316 86 0 3 chr15 546588 546882 -85148872 - AluY SINE Alu -16 295 1 363 286 62 51 chr15 547898 548076 -85147678 + L1ME LINE L1 12 191 -5879 23 92 0 0 chr15 548233 548298 -85147456 + AT_rich Low_complexity Low_complexity 1 65 0 31 58 0 0 chr15 548429 548481 -85147273 + AT_rich Low_complexity Low_complexity 1 52 0 302 286 103 59 chr15 548722 548925 -85146829 - HAL1b LINE L1 -442 906 695 350 279 50 19 chr15 549130 549291 -85146463 - HAL1b LINE L1 -890 458 293 21 36 0 0 chr15 550431 550459 -85145295 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 550742 550764 -85144990 + AT_rich Low_complexity Low_complexity 1 22 0 2221 108 0 7 chr15 551023 551319 -85144435 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr15 551337 551366 -85144388 + (TA)n Simple_repeat Simple_repeat 2 30 0 392 271 148 39 chr15 551931 552134 -85143620 + HAL1 LINE L1 1317 1541 -966 445 296 57 40 chr15 552153 552454 -85143300 + MER46C DNA MER2_type 3 308 -30 24 0 0 0 chr15 552642 552666 -85143088 + AT_rich Low_complexity Low_complexity 1 24 0 213 208 59 99 chr15 553142 553243 -85142511 - MIR SINE MIR -90 172 76 288 333 41 65 chr15 554248 554371 -85141383 + MIR3 SINE MIR 67 186 -22 216 135 0 0 chr15 554402 554439 -85141315 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 233 29 29 0 chr15 554439 554473 -85141281 + (TG)n Simple_repeat Simple_repeat 2 36 0 2148 134 27 3 chr15 554671 555006 -85140748 + MER61A LTR ERV1 1 343 0 1072 204 7 57 chr15 555006 555305 -85140449 + MER61A-int LTR ERV1 1 284 -4933 1349 100 0 17 chr15 555412 555592 -85140162 - AluSq SINE Alu -136 177 1 26 30 0 0 chr15 555720 555753 -85140001 + AT_rich Low_complexity Low_complexity 1 33 0 3739 151 73 9 chr15 557010 557671 -85138083 + L1PBa LINE L1 144 846 -6017 417 182 39 0 chr15 557774 557851 -85137903 + LTR22B LTR ERVK 413 492 0 2490 108 8 17 chr15 557853 558204 -85137550 + HERVK22 LTR ERVK 3 350 -6487 3787 32 0 0 chr15 558232 558674 -85137080 - L1PA2 LINE L1 0 6155 5714 4470 96 2 3 chr15 558674 559255 -85136499 - HERVK22 LTR ERVK -1327 5510 4929 1606 213 80 49 chr15 559355 559812 -85135942 + L1ME4a LINE L1 4801 5276 -890 2092 92 0 39 chr15 559812 560118 -85135636 + AluSx SINE Alu 1 294 -18 1606 213 80 49 chr15 560118 560468 -85135286 + L1ME4a LINE L1 5276 5614 -552 453 108 0 0 chr15 560570 560635 -85135119 - Alu SINE Alu -244 65 1 3455 39 34 17 chr15 561475 561940 -85133814 - L1P LINE L1 -2026 4120 3648 1401 30 0 6 chr15 561936 562104 -85133650 + L1PA4 LINE L1 5850 6016 -139 * 624 330 29 0 chr15 562492 562701 -85133053 + MER58A DNA MER1_type 6 220 -4 2185 161 39 3 chr15 562800 563186 -85132568 + MER57A LTR ERV1 1 400 -3 249 270 18 49 chr15 563470 563633 -85132121 - L1M4 LINE L1 -2296 3850 3693 9801 67 99 5 chr15 563884 565222 -85130532 - L1P LINE L1 -4683 1463 1 945 136 7 0 chr15 565223 565363 -85130391 + HERVK22 LTR ERVK 339 479 -6358 1142 137 6 0 chr15 567111 567286 -85128468 + AluSq SINE Alu 1 176 -137 1107 189 62 8 chr15 567386 567629 -85128125 - L1P LINE L1 -1762 4384 4129 2052 127 16 13 chr15 567629 567944 -85127810 - MER49 LTR ERV1 -599 324 9 2060 61 3 54 chr15 568361 568676 -85127078 - AluY SINE Alu 0 300 1 1277 143 25 94 chr15 568925 569211 -85126543 - L1M2 LINE L1 -520 5780 5515 354 287 112 79 chr15 569443 569861 -85125893 + L1ME4a LINE L1 5650 6081 -40 793 76 9 0 chr15 571479 571584 -85124170 - AluSq/x SINE Alu -205 107 2 1404 158 41 21 chr15 571624 571915 -85123839 + AluJo SINE Alu 1 297 -15 2124 64 3 71 chr15 571976 572302 -85123452 + AluY SINE Alu 1 304 -7 437 263 89 0 chr15 572340 572519 -85123235 - HAL1b LINE L1 -183 1165 971 1644 141 16 4 chr15 572527 572783 -85122971 + AluJb SINE Alu 1 259 -53 405 277 77 51 chr15 573043 573466 -85122288 - MER41E LTR ERV1 -59 453 148 220 387 106 0 chr15 573756 573898 -85121856 - L2 LINE L2 0 3272 3116 853 261 119 17 chr15 574024 574319 -85121435 + L2 LINE L2 2989 3313 0 900 269 92 68 chr15 574598 575424 -85120330 + HAL1 LINE L1 446 1291 -1216 2990 123 69 2 chr15 575494 575999 -85119755 - L1MC1 LINE L1 -1 6332 5794 216 0 0 0 chr15 576099 576123 -85119631 + (A)n Simple_repeat Simple_repeat 1 24 0 1595 113 117 25 chr15 576540 576674 -85119080 - AluSq SINE Alu -14 299 179 2433 62 0 10 chr15 576674 576982 -85118772 - AluY SINE Alu -4 307 3 1595 113 117 25 chr15 576982 577121 -85118633 - AluSq SINE Alu -134 179 1 374 247 47 40 chr15 577165 577315 -85118439 + L1MC5 LINE L1 7539 7689 -272 1607 173 43 56 chr15 577471 577659 -85118095 - L1PA16 LINE L1 -27 6139 5957 1752 120 25 11 chr15 577659 577834 -85117920 - AluJb SINE Alu -2 310 128 2384 57 0 10 chr15 577834 578133 -85117621 - AluY SINE Alu -15 296 1 1752 120 25 11 chr15 578133 578240 -85117514 - AluJb SINE Alu -184 128 24 1607 173 43 56 chr15 578240 578426 -85117328 - L1PA16 LINE L1 -209 5957 5770 22 56 0 0 chr15 578720 578756 -85116998 + AT_rich Low_complexity Low_complexity 1 36 0 2373 68 0 0 chr15 578784 579095 -85116659 - AluY SINE Alu 0 311 1 328 251 16 64 chr15 579420 579607 -85116147 + C-rich Low_complexity Low_complexity 3 180 0 267 31 0 0 chr15 579670 579702 -85116052 + (CGG)n Simple_repeat Simple_repeat 3 34 0 291 200 0 71 chr15 579840 579980 -85115774 + G-rich Low_complexity Low_complexity 4 133 0 465 206 277 37 chr15 581120 581218 -85114536 + L1MC3 LINE L1 7344 7417 -491 2057 98 7 0 chr15 581218 581514 -85114240 + AluY SINE Alu 1 298 -13 465 206 277 37 chr15 581514 581659 -85114095 + L1MC3 LINE L1 7417 7739 -169 1079 157 0 0 chr15 581770 581942 -85113812 + AluSp SINE Alu 136 307 -6 476 98 0 0 chr15 582089 582150 -85113604 - Alu SINE Alu -256 62 2 2109 78 0 0 chr15 582194 582463 -85113291 + AluY SINE Alu 30 298 -13 2023 90 65 0 chr15 583057 583347 -85112407 + AluSq SINE Alu 1 309 -4 386 77 0 0 chr15 583476 583533 -85112221 - L1PB4 LINE L1 -210 5951 5895 269 128 0 0 chr15 583534 583573 -85112181 + L1PB4 LINE L1 5954 5992 -164 483 101 0 0 chr15 583574 583643 -85112111 - MER50 LTR ERV1 -167 567 499 576 95 19 38 chr15 583740 583845 -85111909 + L1PB4 LINE L1 6053 6155 -1 238 286 18 0 chr15 584053 584109 -85111645 + L2 LINE L2 3237 3293 -20 2108 93 28 0 chr15 584109 584400 -85111354 + AluSp SINE Alu 1 299 -14 460 162 81 0 chr15 584400 584499 -85111255 + FLAM_C SINE Alu 34 140 -3 1267 130 27 45 chr15 584643 584733 -85111021 + MER50 LTR ERV1 504 594 -140 2007 122 3 0 chr15 584733 585020 -85110734 + AluSx SINE Alu 5 292 -20 1267 130 27 45 chr15 585020 585152 -85110602 + MER50 LTR ERV1 594 722 -12 1894 156 25 15 chr15 585152 585478 -85110276 + MER50-int LTR ERV1 7 335 -6870 2000 106 17 3 chr15 585533 585834 -85109920 + AluSq SINE Alu 1 305 -8 2241 77 0 10 chr15 586025 586324 -85109430 + AluY SINE Alu 1 296 -15 1941 115 14 10 chr15 586366 586661 -85109093 + AluSx SINE Alu 1 296 -16 2285 61 3 10 chr15 586661 586955 -85108799 + AluY SINE Alu 1 293 -18 1240 101 0 0 chr15 586964 587132 -85108622 + AluSg/x SINE Alu 131 298 -12 276 155 69 0 chr15 587196 587254 -85108500 + L1ME4a LINE L1 6059 6120 -1 791 189 0 0 chr15 587569 587701 -85108053 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr15 587715 587756 -85107998 + AT_rich Low_complexity Low_complexity 1 41 0 1556 145 53 18 chr15 587950 588232 -85107522 + AluJo SINE Alu 1 292 -20 230 269 0 77 chr15 588553 588631 -85107123 + MLT1G LTR MaLR 219 290 -300 1707 150 63 3 chr15 589640 589974 -85105780 - L1MB3 LINE L1 -4 6179 5826 2085 193 23 2 chr15 590033 590468 -85105286 + L1 LINE L1 4575 5018 -1128 1714 128 0 4 chr15 590468 590733 -85105021 + AluSx SINE Alu 39 302 -10 1088 133 0 12 chr15 591738 591903 -85103851 + AluSg/x SINE Alu 136 298 -14 586 149 39 0 chr15 591906 592039 -85103715 + L1M4 LINE L1 3167 3309 -2837 376 265 23 45 chr15 592036 592083 -85103671 - L1M4b LINE L1 -6717 142 95 * 198 0 0 0 chr15 592083 592105 -85103649 + (TG)n Simple_repeat Simple_repeat 1 22 0 2021 95 0 21 chr15 592105 592389 -85103365 - AluY SINE Alu -33 278 1 376 265 23 45 chr15 592389 592472 -85103282 - L1M4b LINE L1 -6762 97 14 564 266 157 4 chr15 592782 592977 -85102777 - L1MC4 LINE L1 -499 7389 7225 1817 163 0 3 chr15 592977 593271 -85102483 - AluJo SINE Alu -19 293 1 564 266 157 4 chr15 593271 593318 -85102436 - L1MC4 LINE L1 -663 7225 7037 2008 147 0 0 chr15 593406 593712 -85102042 + AluSx SINE Alu 1 306 -6 1935 127 14 0 chr15 593768 594059 -85101695 + AluSx SINE Alu 1 295 -17 2202 70 3 23 chr15 594059 594358 -85101396 + AluSp SINE Alu 1 293 -20 1793 149 14 0 chr15 595627 595922 -85099832 + AluJb SINE Alu 1 299 -13 1951 138 0 3 chr15 596671 596969 -85098785 + AluSx SINE Alu 1 297 -15 209 200 14 29 chr15 597574 597644 -85098110 + T-rich Low_complexity Low_complexity 4 72 0 297 255 71 20 chr15 597661 597759 -85097995 - LTR52 LTR ERVL -315 106 4 798 69 8 10 chr15 598555 598802 -85096952 - AluY SINE Alu -8 303 1 515 189 47 142 chr15 599042 599172 -85096582 - L1MC4 LINE L1 -10 8032 7891 968 205 85 0 chr15 599172 599372 -85096382 - MER20 DNA MER1_type -2 217 1 515 189 47 142 chr15 599372 599600 -85096154 - L1MC4 LINE L1 -151 7891 7708 1441 155 109 53 chr15 599664 599948 -85095806 + AluSx SINE Alu 1 300 -2 1731 231 55 4 chr15 599948 600399 -85095355 + L1M4 LINE L1 3672 4145 -2001 1390 74 69 0 chr15 600500 600689 -85095065 - AluSg SINE Alu -108 202 1 1868 177 42 0 chr15 602224 602558 -85093196 - MER7A DNA MER2_type 0 346 1 279 324 27 26 chr15 605912 606075 -85089679 + MIR SINE MIR 23 182 -26 1912 142 3 7 chr15 607092 607395 -85088359 + AluSx SINE Alu 1 302 -10 2122 99 3 0 chr15 607443 607750 -85088004 + AluSp SINE Alu 1 308 0 2274 97 0 3 chr15 607752 608060 -85087694 + AluSg SINE Alu 1 307 -3 1052 116 107 28 chr15 608327 608542 -85087212 - AluJo SINE Alu 0 312 81 2201 82 3 3 chr15 609043 609336 -85086418 + AluSp SINE Alu 1 293 -20 2089 220 45 6 chr15 609613 610099 -85085655 - MLT1D LTR MaLR 0 505 1 8589 60 7 10 chr15 610353 611427 -85084327 - MER11C LTR ERVK 0 1071 1 966 279 20 26 chr15 611721 612069 -85083685 - L1ME1 LINE L1 -5 6161 5816 2019 91 16 26 chr15 612075 612383 -85083371 - AluY SINE Alu -6 305 1 820 199 51 0 chr15 612383 612539 -85083215 - L1ME1 LINE L1 -475 5689 5526 1315 103 0 73 chr15 612894 613098 -85082656 - MER1B DNA MER1_type 0 339 151 355 227 76 42 chr15 613132 613251 -85082503 - MLT1H LTR MaLR 0 549 427 428 119 415 0 chr15 613359 613477 -85082277 - MLT1H LTR MaLR -382 167 1 1959 63 0 12 chr15 614112 614212 -85081542 + AluSc SINE Alu 34 134 -175 2269 70 3 13 chr15 614212 614510 -85081244 + AluSg SINE Alu 1 295 -15 1959 63 0 12 chr15 614510 614662 -85081092 + AluSc SINE Alu 134 283 -26 2183 85 7 0 chr15 614933 615238 -85080516 - AluSg SINE Alu -3 307 1 2273 67 0 0 chr15 615248 615547 -85080207 - AluY SINE Alu -12 299 1 1475 167 29 0 chr15 617128 617409 -85078345 - AluJb SINE Alu -23 289 1 2291 71 0 7 chr15 617480 617789 -85077965 - AluSx SINE Alu -5 307 1 223 273 208 26 chr15 617848 618002 -85077752 + MIR SINE MIR 81 262 0 609 234 208 19 chr15 618187 618456 -85077298 + L1MA9 LINE L1 5957 6276 -36 2239 75 7 0 chr15 618701 618996 -85076758 - AluSq SINE Alu -16 297 1 237 285 254 35 chr15 619119 619347 -85076407 + L2 LINE L2 3036 3313 0 2165 82 0 26 chr15 619546 619685 -85076069 + AluY SINE Alu 1 142 -169 2087 105 0 13 chr15 619685 619991 -85075763 + AluSg SINE Alu 1 302 -8 2165 82 0 26 chr15 619991 620154 -85075600 + AluY SINE Alu 142 295 -16 262 242 105 42 chr15 620264 620359 -85075395 + MIR SINE MIR 21 121 -87 2288 67 0 7 chr15 620360 620658 -85075096 + AluY SINE Alu 1 296 -15 949 97 8 0 chr15 620853 620987 -85074767 - AluSq/x SINE Alu -178 135 1 1983 108 18 0 chr15 621269 621555 -85074199 + AluSg SINE Alu 1 291 -19 734 239 6 12 chr15 621578 621741 -85074013 + AluJo SINE Alu 118 279 -33 204 67 0 0 chr15 621741 621771 -85073983 + (CAA)n Simple_repeat Simple_repeat 1 30 0 216 132 105 0 chr15 621921 621959 -85073795 + L2 LINE L2 3221 3262 -10 1038 202 179 22 chr15 623015 623412 -85072342 - LTR53 LTR ERVL 0 519 1 403 208 24 7 chr15 623506 623603 -85072151 + AluJ/FLAM SINE Alu 1 83 -219 2269 97 0 0 chr15 623860 624158 -85071596 + AluSg SINE Alu 1 298 -12 471 209 18 27 chr15 624158 624268 -85071486 - L1MA10 LINE L1 -4 6330 6222 1436 223 67 16 chr15 624301 624674 -85071080 - L1ME2 LINE L1 0 6164 5773 344 160 0 27 chr15 624680 624700 -85071054 - Alu SINE Alu -254 48 29 1962 115 0 36 chr15 624700 625005 -85070749 - AluSx SINE Alu -18 294 1 344 160 0 27 chr15 625005 625053 -85070701 - Alu SINE Alu -273 29 2 182 222 19 0 chr15 625093 625147 -85070607 + (TA)n Simple_repeat Simple_repeat 2 56 0 1445 222 90 41 chr15 625165 625252 -85070502 - L1ME2 LINE L1 -873 5273 5192 2131 92 0 44 chr15 625252 625424 -85070330 - AluSg SINE Alu -7 303 125 2379 76 0 0 chr15 625424 625727 -85070027 - AluY SINE Alu -8 303 1 2028 127 0 3 chr15 625727 626026 -85069728 - AluSx SINE Alu -14 298 1 2131 92 0 44 chr15 626026 626169 -85069585 - AluSg SINE Alu -183 127 1 1445 222 90 41 chr15 626169 626590 -85069164 - L1ME2 LINE L1 -954 5192 4740 2167 78 7 14 chr15 626591 626887 -85068867 - AluY SINE Alu -17 294 1 2108 111 0 0 chr15 626891 627188 -85068566 - AluSc SINE Alu -12 297 1 2011 117 3 3 chr15 627447 627745 -85068009 - AluSg SINE Alu -12 298 1 2334 93 0 0 chr15 627768 628081 -85067673 - AluSp SINE Alu 0 313 1 463 217 0 0 chr15 628380 628472 -85067282 - FLAM_A SINE Alu -12 130 39 2047 132 7 3 chr15 628527 628837 -85066917 + AluSx SINE Alu 1 311 -1 2242 70 3 13 chr15 629547 629845 -85065909 - AluY SINE Alu -16 295 1 276 191 90 34 chr15 629954 630043 -85065711 - L1MC5 LINE L1 -1 7994 7845 454 250 31 31 chr15 630258 630418 -85065336 - MLT1H LTR MaLR -292 257 98 218 287 92 46 chr15 630581 630668 -85065086 + L2 LINE L2 3182 3272 0 24 32 0 0 chr15 631477 631508 -85064246 + AT_rich Low_complexity Low_complexity 1 31 0 2137 91 3 10 chr15 632168 632465 -85063289 + AluSx SINE Alu 1 295 -17 2179 98 3 0 chr15 633358 633654 -85062100 - AluSg SINE Alu -13 297 1 2167 109 3 0 chr15 633654 633957 -85061797 - AluSx SINE Alu -7 305 2 763 177 35 91 chr15 633957 634069 -85061685 + L1M4 LINE L1 4212 4329 -1817 2190 100 3 13 chr15 634069 634378 -85061376 + AluSx SINE Alu 1 306 -6 2242 84 3 0 chr15 634386 634684 -85061070 + AluSq SINE Alu 2 300 -13 2359 70 0 10 chr15 634688 634990 -85060764 + AluY SINE Alu 1 299 -12 763 177 35 91 chr15 634990 635095 -85060659 + L1M4 LINE L1 4339 4430 -1716 409 206 0 0 chr15 635096 635164 -85060590 + AluS SINE Alu 1 68 -232 761 177 67 34 chr15 635165 635325 -85060429 + L1M4 LINE L1 5110 5280 -866 2058 106 13 3 chr15 635325 635627 -85060127 + AluSq SINE Alu 2 306 -7 761 177 67 34 chr15 635627 635675 -85060079 + L1M4 LINE L1 5280 5325 -821 2042 96 3 3 chr15 635682 635964 -85059790 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr15 635964 635990 -85059764 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 287 211 30 39 chr15 636383 636473 -85059281 + MIR SINE MIR 73 164 -44 1817 169 0 10 chr15 637079 637393 -85058361 + AluJo SINE Alu 1 311 -1 2113 77 50 10 chr15 638134 638432 -85057322 - AluY SINE Alu -1 310 1 1818 271 92 2 chr15 638984 639616 -85056138 - MER20B DNA MER1_type -61 722 34 2112 92 13 10 chr15 639714 640018 -85055736 + AluSq SINE Alu 1 305 -8 2085 91 13 20 chr15 640399 640697 -85055057 + AluSp SINE Alu 1 296 -17 1036 282 35 47 chr15 640728 641132 -85054622 - L2 LINE L2 -5 3308 2910 1117 199 93 31 chr15 641149 641440 -85054314 + MLT1F LTR MaLR 21 329 -213 310 254 106 63 chr15 641459 641648 -85054106 + L1ME LINE L1 1918 2114 -4282 374 301 22 37 chr15 641817 641953 -85053801 + L1ME LINE L1 5245 5378 -837 294 197 135 16 chr15 642008 642140 -85053614 + L1ME LINE L1 5483 5644 -587 194 277 138 15 chr15 642140 642205 -85053549 + L2 LINE L2 2685 2757 -557 371 276 75 92 chr15 642254 642417 -85053337 + L2 LINE L2 3046 3205 -108 2179 81 0 33 chr15 642417 642724 -85053030 + AluSx SINE Alu 1 297 -15 371 276 75 92 chr15 642724 642799 -85052955 + L2 LINE L2 3205 3280 -33 2403 82 0 0 chr15 642823 643127 -85052627 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 643222 643244 -85052510 + AT_rich Low_complexity Low_complexity 1 22 0 2323 76 0 3 chr15 643380 643682 -85052072 + AluY SINE Alu 1 301 -10 2036 123 13 0 chr15 644164 644472 -85051282 + AluSx SINE Alu 1 312 0 2410 74 0 0 chr15 644549 644860 -85050894 - AluY SINE Alu 0 311 1 1885 122 40 3 chr15 645292 645588 -85050166 - AluSx SINE Alu -5 307 1 314 253 0 0 chr15 646218 646305 -85049449 - HAL1 LINE L1 -143 2364 2278 1200 239 98 27 chr15 646345 647017 -85048737 - HAL1 LINE L1 -357 2150 1527 1626 167 21 10 chr15 647017 647305 -85048449 - AluSx SINE Alu -21 291 1 1200 239 98 27 chr15 647305 647318 -85048436 - HAL1 LINE L1 -980 1527 1516 2316 84 0 0 chr15 647318 647616 -85048138 - AluSq SINE Alu -15 298 1 1200 239 98 27 chr15 647616 647898 -85047856 - HAL1 LINE L1 -991 1516 1030 1153 136 0 0 chr15 648160 648337 -85047417 - AluJb SINE Alu -2 310 134 1735 162 6 16 chr15 648337 648652 -85047102 - AluSx SINE Alu 0 312 1 239 258 0 34 chr15 648882 648971 -85046783 - L1ME LINE L1 -5687 383 298 303 330 37 18 chr15 649093 649202 -85046552 - L1ME LINE L1 -5901 169 59 319 248 15 131 chr15 649271 649408 -85046346 - HAL1 LINE L1 -1505 1002 882 2403 57 3 0 chr15 649425 649722 -85046032 - AluY SINE Alu -13 298 1 254 213 200 12 chr15 649745 649825 -85045929 - HAL1 LINE L1 -1823 684 590 313 311 105 16 chr15 649951 650141 -85045613 - HAL1 LINE L1 -2174 333 127 1052 129 13 0 chr15 650141 650296 -85045458 - AluSg/x SINE Alu -21 291 135 2398 58 0 0 chr15 650401 650693 -85045061 + AluY SINE Alu 2 293 -18 315 268 204 14 chr15 650735 650877 -85044877 + MIR SINE MIR 93 261 -1 672 172 35 48 chr15 653356 653501 -85042253 - MER106B DNA MER1_type -13 1046 904 1569 159 48 27 chr15 655514 655809 -85039945 - AluJo SINE Alu -11 301 1 356 272 136 68 chr15 656408 656702 -85039052 + L1MEd LINE L1 751 1064 -5055 781 227 194 33 chr15 656705 657205 -85038549 + MLT1E2 LTR MaLR 2 626 0 2068 87 27 50 chr15 657218 657517 -85038237 + AluSq SINE Alu 20 311 -2 430 219 8 62 chr15 657533 657661 -85038093 + L1MEd LINE L1 1083 1203 -4916 1203 176 210 0 chr15 658996 659234 -85036520 - AluSg1 SINE Alu -21 288 1 558 144 136 16 chr15 659248 659373 -85036381 + MER20 DNA MER1_type 80 219 0 254 219 0 16 chr15 659517 659581 -85036173 - MIR SINE MIR -30 232 170 426 225 81 38 chr15 660053 660213 -85035541 - L1MC5 LINE L1 -50 7911 7745 639 204 56 4 chr15 660590 660773 -85034981 + MER3 DNA MER1_type 6 179 -30 2062 122 31 0 chr15 661565 661853 -85033901 + AluSx SINE Alu 1 297 -15 2432 74 0 0 chr15 662534 662831 -85032923 + AluY SINE Alu 1 297 -14 210 324 0 45 chr15 662944 663055 -85032699 + CT-rich Low_complexity Low_complexity 4 109 0 2216 120 3 0 chr15 664129 664430 -85031324 - AluSg SINE Alu -6 304 3 1947 125 68 0 chr15 664590 664744 -85031010 - AluSx SINE Alu -12 300 158 1583 109 14 0 chr15 664744 664955 -85030799 - AluSg SINE Alu -85 225 12 1947 125 68 0 chr15 664955 665081 -85030673 - AluSx SINE Alu -154 158 1 902 152 0 0 chr15 665084 665216 -85030538 - FLAM_C SINE Alu -11 132 1 911 240 35 47 chr15 665621 665886 -85029868 - MER58B DNA MER1_type -2080 340 78 1699 103 117 43 chr15 665886 666168 -85029586 + AluSx SINE Alu 1 303 -9 911 240 35 47 chr15 666168 666244 -85029510 - MER58B DNA MER1_type -2342 78 3 184 289 142 51 chr15 666275 666472 -85029282 + MIR SINE MIR 21 235 -27 2177 139 0 0 chr15 666481 666790 -85028964 - AluSx SINE Alu -3 309 1 2416 96 0 0 chr15 667156 667458 -85028296 - AluSg SINE Alu -4 306 5 2102 269 91 6 chr15 667472 668250 -85027504 - L1ME1 LINE L1 -3 6163 5320 622 179 49 0 chr15 668323 668446 -85027308 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 668775 668808 -85026946 + AT_rich Low_complexity Low_complexity 1 33 0 2408 173 92 0 chr15 668808 669329 -85026425 - L1MB3 LINE L1 -8 6175 5607 2346 78 0 3 chr15 669335 669629 -85026125 - AluY SINE Alu -18 293 1 901 185 0 0 chr15 669659 669805 -85025949 - FRAM SINE Alu -13 163 18 610 225 52 6 chr15 670688 670861 -85024893 + L1ME2 LINE L1 5982 6162 -2 2226 112 3 0 chr15 670881 671177 -85024577 + AluSx SINE Alu 1 297 -15 833 173 11 62 chr15 671821 672000 -85023754 - AluSg/x SINE Alu -15 297 128 394 305 0 0 chr15 672347 672475 -85023279 + CT-rich Low_complexity Low_complexity 3 130 0 223 212 0 26 chr15 672509 672622 -85023132 + CT-rich Low_complexity Low_complexity 3 112 0 367 222 0 17 chr15 672677 672853 -85022901 + CT-rich Low_complexity Low_complexity 3 175 0 270 261 0 0 chr15 672887 673063 -85022691 + CT-rich Low_complexity Low_complexity 3 178 0 530 279 0 1 chr15 673097 674868 -85020886 + CT-rich Low_complexity Low_complexity 1 1768 0 255 324 0 0 chr15 674873 675009 -85020745 + (CTG)n Simple_repeat Simple_repeat 3 138 0 212 323 0 0 chr15 675620 675685 -85020069 - MIR SINE MIR -91 117 53 1370 101 0 0 chr15 676024 676202 -85019552 - AluSp SINE Alu 0 313 136 504 259 179 20 chr15 676335 676536 -85019218 - MIR SINE MIR -10 252 20 222 91 0 0 chr15 676730 676763 -85018991 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 192 19 0 chr15 676767 676819 -85018935 - L1MC4a LINE L1 -1871 5937 5885 274 274 60 17 chr15 678152 678269 -85017485 - L2 LINE L2 -5 3308 3187 312 314 64 29 chr15 678410 678550 -85017204 - MIR SINE MIR -70 192 48 521 134 12 0 chr15 680696 680778 -85014976 + AluS SINE Alu 5 87 -225 2203 105 3 22 chr15 681129 681443 -85014311 - AluSg SINE Alu -2 308 1 611 277 80 44 chr15 681532 681799 -85013955 - L1M4 LINE L1 -2186 3960 3704 2240 112 0 3 chr15 681799 682136 -85013618 - AluY SINE Alu 0 311 3 611 277 80 44 chr15 682136 682432 -85013322 - L1M4 LINE L1 -2442 3704 3377 248 209 55 22 chr15 682456 682547 -85013207 - L1M4 LINE L1 -2869 3277 3184 660 319 69 9 chr15 682563 682996 -85012758 - L1M4 LINE L1 -3308 2838 2380 1812 231 46 104 chr15 683030 683763 -85011991 + LTR34 LTR ERV1 1 691 -8 4131 218 23 25 chr15 683854 684879 -85010875 - L1MA9 LINE L1 -30 6282 5260 1771 180 30 0 chr15 684879 685174 -85010580 - AluJb SINE Alu -8 304 1 699 153 9 0 chr15 685200 685311 -85010443 + AluSx SINE Alu 2 113 -199 1562 123 0 0 chr15 685402 685613 -85010141 + AluSx SINE Alu 92 302 -8 593 217 56 35 chr15 685632 685775 -85009979 + LTR8 LTR ERV1 1 146 -545 977 114 15 0 chr15 685869 686001 -85009753 + AluSg/x SINE Alu 159 292 -20 2165 94 42 3 chr15 686474 686760 -85008994 + AluSp SINE Alu 1 297 -16 1124 216 64 49 chr15 686962 687351 -85008403 + MSTD LTR MaLR 2 396 0 297 350 25 2 chr15 688345 688566 -85007188 + L1ME LINE L1 4882 5110 -1036 311 291 103 29 chr15 688721 688768 -85006986 + L1ME LINE L1 5268 5310 -860 2514 75 0 0 chr15 688768 689075 -85006679 + AluY SINE Alu 1 307 -4 311 291 103 29 chr15 689075 689202 -85006552 + L1ME LINE L1 5310 5455 -715 445 244 76 8 chr15 689372 689491 -85006263 - MER3 DNA MER1_type -2 207 81 252 100 0 0 chr15 689768 689808 -85005946 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 730 173 0 0 chr15 692436 692569 -85003185 + FLAM_C SINE Alu 1 133 0 1909 134 21 54 chr15 693373 693449 -85002305 - THE1C LTR MaLR 0 375 298 2558 70 0 0 chr15 693449 693751 -85002003 + AluY SINE Alu 1 302 -9 1909 134 21 54 chr15 693751 694062 -85001692 - THE1C LTR MaLR -77 298 1 7996 110 122 43 chr15 694062 695363 -85000391 - THE1C-int LTR MaLR 0 1580 150 2308 114 0 7 chr15 695363 695670 -85000084 + AluSg SINE Alu 1 305 -5 7996 110 122 43 chr15 695670 695833 -84999921 - THE1C-int LTR MaLR -1430 150 1 2029 118 55 22 chr15 695833 696196 -84999558 - THE1C LTR MaLR 0 375 1 245 200 55 0 chr15 696264 696319 -84999435 - L1ME LINE L1 -3118 3097 3040 2207 241 47 8 chr15 696356 696999 -84998755 - L1ME LINE L1 -3151 3064 2397 517 298 63 0 chr15 696999 697157 -84998597 + MER68 LTR ERV1 395 562 0 200 226 119 48 chr15 697840 697924 -84997830 + MIR SINE MIR 61 150 -112 1962 135 7 10 chr15 698363 698660 -84997094 + AluJb SINE Alu 1 296 -16 2009 133 23 13 chr15 698672 698981 -84996773 + AluSx SINE Alu 1 312 0 2093 110 7 33 chr15 699944 700244 -84995510 + AluSx SINE Alu 13 304 -8 2440 92 0 0 chr15 701055 701360 -84994394 + AluSx SINE Alu 1 305 -7 2438 93 3 3 chr15 704191 704502 -84991252 - AluSp SINE Alu -2 311 1 312 257 44 66 chr15 704648 704784 -84990970 + L1MCa LINE L1 1932 2064 -4362 1685 150 23 19 chr15 704801 704929 -84990825 - AluJo SINE Alu -45 267 141 2497 77 0 0 chr15 704929 705226 -84990528 - AluY SINE Alu -14 297 1 1685 150 23 19 chr15 705226 705363 -84990391 - AluJo SINE Alu -171 141 1 303 271 43 0 chr15 705363 705433 -84990321 - HAL1 LINE L1 -163 2344 2272 398 247 39 55 chr15 705560 705767 -84989987 + MER21B LTR ERV1 149 353 -252 227 265 13 99 chr15 705938 706089 -84989665 + MER21A LTR ERV1 622 759 -172 1037 311 111 24 chr15 706224 706837 -84988917 - L1ME LINE L1 -4981 1224 691 2223 114 0 19 chr15 706837 707145 -84988609 + AluSq SINE Alu 1 302 -11 2135 125 20 0 chr15 707391 707696 -84988058 - AluSx SINE Alu -1 311 1 704 328 97 8 chr15 707776 708148 -84987606 - L1ME LINE L1 -5937 459 55 1151 148 12 0 chr15 708169 708338 -84987416 - AluSg/x SINE Alu -9 301 131 850 223 44 50 chr15 708341 708451 -84987303 + L1MC4a LINE L1 6300 6409 -1399 1800 173 0 33 chr15 708451 708634 -84987120 - AluJb SINE Alu -16 296 125 2264 102 3 0 chr15 708634 708928 -84986826 + AluY SINE Alu 1 295 -16 1800 173 0 33 chr15 708928 709050 -84986704 - AluJb SINE Alu -187 125 1 850 223 44 50 chr15 709050 709257 -84986497 + L1MC4a LINE L1 6409 6615 -1193 2302 141 31 6 chr15 709274 709629 -84986125 + THE1B LTR MaLR 1 364 0 1977 139 14 0 chr15 709680 709960 -84985794 + AluSx SINE Alu 3 286 -26 229 105 26 0 chr15 709961 709999 -84985755 + MLT1C LTR MaLR 34 72 -395 395 22 0 0 chr15 710346 710391 -84985363 + (TC)n Simple_repeat Simple_repeat 2 46 0 1246 121 0 12 chr15 712435 712608 -84983146 + AluSg/x SINE Alu 84 254 -56 4733 220 51 22 chr15 712608 712702 -84983052 + L1M2c LINE L1 11 101 -6688 2090 102 25 3 chr15 712702 712987 -84982767 + AluY SINE Alu 1 291 -20 4733 220 51 22 chr15 712987 714058 -84981696 + L1M2c LINE L1 101 1209 -5580 21 0 0 0 chr15 714204 714225 -84981529 + GC_rich Low_complexity Low_complexity 1 21 0 762 226 90 73 chr15 715162 715239 -84980515 + L1MEc LINE L1 1978 2052 -4344 2306 92 0 3 chr15 715239 715534 -84980220 + AluSx SINE Alu 1 294 -18 762 226 90 73 chr15 715534 715835 -84979919 + L1MEc LINE L1 2052 2370 -4026 2199 119 3 3 chr15 715835 716137 -84979617 + AluSp SINE Alu 1 302 -11 762 226 90 73 chr15 716137 716292 -84979462 + L1MEc LINE L1 2370 2521 -3875 1698 109 26 4 chr15 716317 716546 -84979208 + AluSx SINE Alu 1 234 -78 1038 117 0 0 chr15 716546 716683 -84979071 + AluSp/q SINE Alu 170 306 -7 295 288 72 7 chr15 716694 716847 -84978907 + L1MEc LINE L1 2519 2681 -3534 308 261 11 0 chr15 716979 717067 -84978687 + L1MEc LINE L1 2758 2846 -3369 684 188 0 45 chr15 717070 717224 -84978530 - MER44D DNA MER2_type 0 605 459 735 190 0 0 chr15 717224 717345 -84978409 + AluSg/x SINE Alu 154 274 -36 180 0 0 0 chr15 717366 717386 -84978368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 554 127 100 0 chr15 717386 717496 -84978258 - MER44D DNA MER2_type -138 467 347 343 185 0 0 chr15 717515 717569 -84978185 + MER44D DNA MER2_type 38 361 -248 1855 135 14 3 chr15 717591 717906 -84977848 + AluSx SINE Alu 1 318 0 338 231 0 39 chr15 717907 718011 -84977743 + L1ME3 LINE L1 97 196 -6663 * 1184 231 64 44 chr15 717981 718088 -84977666 + L1ME3 LINE L1 5605 5708 -1249 2228 120 3 0 chr15 718088 718388 -84977366 + AluSx SINE Alu 1 301 -11 1184 231 64 44 chr15 718388 718825 -84976929 + L1ME3 LINE L1 5708 6160 -797 839 188 36 80 chr15 718819 718959 -84976795 + L1ME2 LINE L1 5564 5688 -476 * 2488 87 3 0 chr15 718959 719268 -84976486 - AluSp SINE Alu -3 310 1 839 188 36 80 chr15 719268 719403 -84976351 + L1ME2 LINE L1 5688 5827 -337 1111 74 0 27 chr15 719469 719602 -84976152 + AluSg/x SINE Alu 167 297 -15 2504 87 0 3 chr15 719602 719912 -84975842 + AluY SINE Alu 1 309 -2 1111 74 0 27 chr15 719912 719927 -84975827 + AluSg/x SINE Alu 297 311 -1 536 156 44 9 chr15 719928 720040 -84975714 + L1ME3 LINE L1 6297 6407 -598 391 221 44 127 chr15 720035 720205 -84975549 + L1ME3 LINE L1 6624 6742 -231 * 2377 105 0 3 chr15 720205 720510 -84975244 + AluSx SINE Alu 1 304 -8 391 221 44 127 chr15 720510 720652 -84975102 + L1ME3 LINE L1 6742 6894 -79 485 211 8 45 chr15 720652 720785 -84974969 - MLT2C1 LTR ERVL 0 397 270 2388 90 0 10 chr15 720801 721111 -84974643 + AluSp SINE Alu 1 307 -6 1535 177 15 47 chr15 721242 721365 -84974389 + MLT1A1 LTR MaLR 38 163 -202 2692 58 0 0 chr15 721365 721674 -84974080 + AluY SINE Alu 1 309 -2 1535 177 15 47 chr15 721674 721889 -84973865 + MLT1A1 LTR MaLR 163 365 0 380 301 139 26 chr15 721891 722200 -84973554 + MLT1C LTR MaLR 72 415 -52 2492 50 0 10 chr15 722202 722500 -84973254 + AluY SINE Alu 1 295 -16 852 228 23 8 chr15 729328 729560 -84966194 - L1M3e LINE L1 -6808 681 13 2653 49 0 3 chr15 729782 730089 -84965665 + AluY SINE Alu 1 306 -5 2236 104 24 0 chr15 731204 731491 -84964263 - AluSx SINE Alu -18 294 1 1445 196 43 47 chr15 731860 732161 -84963593 - AluSx SINE Alu -12 300 1 1948 163 16 7 chr15 732441 732748 -84963006 + AluJb SINE Alu 1 310 -2 2094 143 3 0 chr15 733125 733425 -84962329 + AluSx SINE Alu 1 301 -11 1350 191 14 11 chr15 733585 733868 -84961886 - MSTB1 LTR MaLR 0 432 149 533 191 56 93 chr15 733976 734191 -84961563 - MLT1D LTR MaLR -292 213 7 * 553 256 47 21 chr15 734166 734400 -84961354 - MLT2C2 LTR ERVL -224 240 1 307 122 0 0 chr15 734402 734451 -84961303 - Ricksha DNA DNA -1703 343 295 764 169 15 0 chr15 734479 734609 -84961145 - FLAM_C SINE Alu -1 132 1 283 138 15 15 chr15 735154 735219 -84960535 + CT-rich Low_complexity Low_complexity 3 67 0 699 145 53 0 chr15 735517 735648 -84960106 + MLT1A1 LTR MaLR 228 365 0 730 264 114 25 chr15 735648 736008 -84959746 + MLT1C LTR MaLR 69 460 -7 2302 79 14 3 chr15 736037 736329 -84959425 - AluSx SINE Alu -17 295 1 3087 156 42 2 chr15 736579 737125 -84958629 - LTR24B LTR ERV1 -7 569 2 368 279 25 41 chr15 737133 737380 -84958374 + MLT2F LTR ERVL 292 614 -49 201 147 0 0 chr15 737403 737437 -84958317 + (TA)n Simple_repeat Simple_repeat 2 35 0 775 280 53 20 chr15 737489 737945 -84957809 + MLT1C-int LTR MaLR 1 606 -765 2337 90 0 0 chr15 738042 738331 -84957423 - AluSg SINE Alu -21 289 1 1325 172 121 8 chr15 738339 738462 -84957292 - AluSg SINE Alu -19 291 183 2577 73 0 13 chr15 738462 738776 -84956978 - AluSx SINE Alu 0 312 3 1325 172 121 8 chr15 738776 738908 -84956846 - AluSg SINE Alu -127 183 7 2185 123 3 7 chr15 739021 739323 -84956431 - AluSq SINE Alu -12 301 1 1090 180 60 85 chr15 739449 739765 -84955989 - L1ME1 LINE L1 -307 5859 5552 776 126 24 31 chr15 739767 739894 -84955860 + AluJo/FLAM SINE Alu 2 127 -185 1963 149 0 0 chr15 739895 740220 -84955534 + AluSx SINE Alu 1 325 0 468 117 0 0 chr15 740457 740534 -84955220 + AluS SINE Alu 229 305 -4 377 198 12 0 chr15 740544 740625 -84955129 - L1ME1 LINE L1 -598 5568 5487 * 1804 248 112 6 chr15 740623 741251 -84954503 - L1ME2 LINE L1 -54 6110 5417 1458 178 16 52 chr15 741296 741409 -84954345 + AluJb SINE Alu 1 116 -196 1939 170 0 6 chr15 741409 741721 -84954033 - AluSx SINE Alu -2 310 1 1458 178 16 52 chr15 741721 741916 -84953838 + AluJb SINE Alu 116 298 -14 397 243 195 5 chr15 742032 742114 -84953640 - L1ME2 LINE L1 -917 5229 5164 2416 94 0 0 chr15 742114 742413 -84953341 - AluSx SINE Alu -13 299 1 397 243 195 5 chr15 742413 742515 -84953239 - L1ME2 LINE L1 -982 5164 5010 2313 123 0 3 chr15 742541 742849 -84952905 - AluSg SINE Alu -3 307 1 2225 114 0 7 chr15 742967 743264 -84952490 + AluSx SINE Alu 2 296 -16 1201 155 0 0 chr15 743385 743559 -84952195 - AluJb SINE Alu -5 307 134 2228 90 17 7 chr15 743559 743848 -84951906 - AluSx SINE Alu -19 293 2 249 152 315 0 chr15 746674 746766 -84948988 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 746766 746788 -84948966 + AT_rich Low_complexity Low_complexity 1 22 0 1965 57 0 0 chr15 747749 747978 -84947776 + AluY SINE Alu 1 229 -82 1384 184 123 5 chr15 747982 748363 -84947391 + Charlie4a DNA MER1_type 83 508 0 1773 208 2 45 chr15 749273 749672 -84946082 - MER77 LTR ERV1 -4 601 220 252 315 31 47 chr15 749833 749960 -84945794 + L2 LINE L2 3146 3270 -43 2167 145 9 9 chr15 750102 750439 -84945315 + MER1B DNA MER1_type 1 337 0 2242 117 0 7 chr15 750463 750762 -84944992 - AluSx SINE Alu -10 302 6 512 233 26 11 chr15 750766 750955 -84944799 - L1M4 LINE L1 -2798 3348 3157 1762 110 141 0 chr15 750968 751231 -84944523 - AluSx SINE Alu -2 300 1 1218 159 111 4 chr15 751234 751504 -84944250 - L1MCa LINE L1 -5273 1153 855 527 286 102 79 chr15 751524 751867 -84943887 - MER77 LTR ERV1 -254 351 1 669 278 170 13 chr15 751868 752236 -84943518 + L1MC/D LINE L1 5254 5710 -2098 2144 125 0 3 chr15 752236 752531 -84943223 + AluSg SINE Alu 1 294 -16 669 278 170 13 chr15 752531 752622 -84943132 + L1MC/D LINE L1 5710 5785 -2023 993 190 49 19 chr15 753248 753547 -84942207 - MER2 DNA MER2_type -2 343 1 24 53 0 0 chr15 753643 753681 -84942073 + AT_rich Low_complexity Low_complexity 1 38 0 733 125 39 55 chr15 754052 754180 -84941574 + FLAM_C SINE Alu 2 127 -16 1969 134 7 17 chr15 754197 754496 -84941258 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr15 755193 755215 -84940539 + AT_rich Low_complexity Low_complexity 1 22 0 482 132 0 0 chr15 755232 755308 -84940446 + AluJ/FRAM SINE Alu 229 304 -8 582 139 0 0 chr15 755308 755394 -84940360 - MER2 DNA MER2_type -213 132 47 1485 273 50 7 chr15 755494 755956 -84939798 + L1M1 LINE L1 269 750 -6815 1293 149 69 40 chr15 755956 756232 -84939522 + LTR19A LTR ERV1 1 284 -202 9057 181 53 60 chr15 756234 756365 -84939389 + L1M1 LINE L1 2184 2314 -5251 416 174 0 14 chr15 756365 756461 -84939293 - AluS SINE Alu 0 309 227 9057 181 53 60 chr15 756461 757268 -84938486 + L1M1 LINE L1 2314 3125 -4440 1732 161 8 0 chr15 757268 757529 -84938225 + AluSx SINE Alu 35 297 -15 2470 81 0 0 chr15 757535 757832 -84937922 + AluY SINE Alu 1 297 -14 9057 181 53 60 chr15 757832 758329 -84937425 + L1M1 LINE L1 3130 3629 -3936 2128 127 10 10 chr15 758329 758637 -84937117 + AluSq SINE Alu 1 308 -5 9057 181 53 60 chr15 758637 759442 -84936312 + L1M1 LINE L1 3629 4438 -3127 1681 155 0 57 chr15 759442 759758 -84935996 + AluJb SINE Alu 1 298 -14 9057 181 53 60 chr15 759758 760989 -84934765 + L1M1 LINE L1 4438 5721 -1844 989 134 6 0 chr15 760989 761146 -84934608 + AluSx SINE Alu 1 158 -154 2044 131 3 0 chr15 768540 768845 -84926909 + AluSq SINE Alu 1 306 -7 273 185 0 62 chr15 768845 768920 -84926834 - L1M4 LINE L1 -1532 4614 4545 432 273 118 68 chr15 768951 769632 -84926122 - L1M4 LINE L1 -1665 4481 3767 1219 153 0 40 chr15 769660 769888 -84925866 - AluJo SINE Alu -9 303 85 260 285 105 40 chr15 769979 770207 -84925547 - L1M4 LINE L1 -2467 3679 3437 1336 195 36 20 chr15 770288 770590 -84925164 - AluJb SINE Alu -4 308 2 462 159 0 65 chr15 770971 771078 -84924676 - AluJb SINE Alu -3 309 210 1948 134 0 28 chr15 771089 771410 -84924344 - AluSx SINE Alu 0 312 1 25 75 0 0 chr15 771435 771488 -84924266 + AT_rich Low_complexity Low_complexity 1 53 0 2262 75 3 0 chr15 772212 772505 -84923249 - AluY SINE Alu -12 299 6 1850 139 7 14 chr15 772863 773158 -84922596 + AluJb SINE Alu 5 297 -15 24 32 0 0 chr15 773710 773741 -84922013 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr15 774237 774268 -84921486 + AT_rich Low_complexity Low_complexity 1 31 0 540 234 98 33 chr15 774522 774706 -84921048 - L1MC4a LINE L1 -1969 5839 5644 1481 119 155 0 chr15 774708 774959 -84920795 - AluY SINE Alu -7 304 15 289 338 89 19 chr15 774982 775195 -84920559 - L1MC4a LINE L1 -2156 5652 5425 696 239 41 82 chr15 775226 775544 -84920210 - L1MD2 LINE L1 -55 6304 6000 400 253 75 29 chr15 775582 775756 -84919998 - L1MC4a LINE L1 -2373 5435 5254 889 177 51 95 chr15 776369 776579 -84919175 + L1MB2 LINE L1 5900 6091 -80 874 146 0 0 chr15 776579 776702 -84919052 + FLAM_C SINE Alu 1 123 -10 889 177 51 95 chr15 776702 776780 -84918974 + L1MB2 LINE L1 6091 6171 0 1446 177 0 71 chr15 776790 776943 -84918811 + AluJb SINE Alu 1 122 -190 1574 81 28 0 chr15 776943 777154 -84918600 + AluSg/x SINE Alu 70 286 -24 1446 177 0 71 chr15 777154 777310 -84918444 + AluJb SINE Alu 122 288 -24 2135 100 16 13 chr15 777446 777624 -84918130 - AluSg SINE Alu 0 310 129 2176 100 0 13 chr15 777624 777934 -84917820 - AluSg SINE Alu -4 306 1 2135 100 16 13 chr15 777934 778064 -84917690 - AluSg SINE Alu -181 129 1 235 196 39 0 chr15 778170 778221 -84917533 - MER94 DNA DNA -81 53 1 2140 98 10 7 chr15 778239 778544 -84917210 - AluSc SINE Alu -2 307 2 5753 112 61 6 chr15 780600 781065 -84914689 - L1MA5A LINE L1 -2 6295 5857 213 39 0 0 chr15 781065 781091 -84914663 + (TA)n Simple_repeat Simple_repeat 2 27 0 5753 112 61 6 chr15 781091 781547 -84914207 - L1MA5A LINE L1 -440 5857 5320 2148 112 0 3 chr15 781547 781850 -84913904 - AluSq SINE Alu -11 302 1 2621 155 57 38 chr15 781850 782374 -84913380 - L1M2c LINE L1 -4886 1903 1370 481 118 0 129 chr15 782375 782411 -84913343 + AluS SINE Alu 2 41 -271 1919 145 7 0 chr15 782411 782701 -84913053 - AluSx SINE Alu -20 292 1 481 118 0 129 chr15 782701 782757 -84912997 + AluS SINE Alu 41 82 -230 290 239 23 23 chr15 782857 782945 -84912809 - L1MC4a LINE L1 -1049 5097 5010 2240 89 0 13 chr15 782971 783284 -84912470 - AluSx SINE Alu -3 309 1 700 209 7 14 chr15 783287 783426 -84912328 - AluJo SINE Alu -173 139 2 1679 176 0 0 chr15 783778 784068 -84911686 - AluJb SINE Alu -22 290 1 1766 140 25 3 chr15 784289 784574 -84911180 - AluSx SINE Alu -21 291 1 2052 115 0 0 chr15 785414 785710 -84910044 - AluSx SINE Alu -16 296 1 2130 88 7 17 chr15 785713 786010 -84909744 - AluSp SINE Alu -19 294 1 470 314 136 34 chr15 786018 786429 -84909325 - L1MC5 LINE L1 -30 7931 7479 704 136 0 0 chr15 787252 787355 -84908399 - FLAM_A SINE Alu -12 130 28 1693 166 3 25 chr15 788000 788319 -84907435 - AluJo SINE Alu 0 312 1 470 314 88 18 chr15 789275 789549 -84906205 + MARNA DNA Mariner 126 418 -168 214 193 193 18 chr15 791255 791312 -84904442 - MIR SINE MIR -33 229 163 1946 66 73 4 chr15 791495 791767 -84903987 + AluY SINE Alu 2 292 -19 220 365 51 15 chr15 791790 791927 -84903827 - L2 LINE L2 0 3313 3172 899 158 0 0 chr15 792436 792569 -84903185 - FLAM_C SINE Alu 0 133 1 232 232 136 40 chr15 792609 792635 -84903119 + MIR SINE MIR 98 120 -142 2099 93 31 0 chr15 792635 792924 -84902830 - AluSq SINE Alu -15 298 1 232 232 136 40 chr15 792924 793022 -84902732 + MIR SINE MIR 120 234 -28 322 214 111 79 chr15 793459 793585 -84902169 - L1ME4a LINE L1 -32 6089 5960 2336 65 0 0 chr15 793640 793934 -84901820 - AluY SINE Alu -17 294 1 1902 136 3 10 chr15 795068 795377 -84900377 + AluSx SINE Alu 6 312 0 365 262 107 77 chr15 795708 795876 -84899878 + L1MCa LINE L1 1902 2074 -4352 2137 82 3 20 chr15 795882 796176 -84899578 - AluSq SINE Alu -24 289 1 1634 144 27 27 chr15 796201 796500 -84899254 + AluJb SINE Alu 3 301 -11 1382 130 0 0 chr15 796609 796816 -84898938 + AluSg/x SINE Alu 102 308 -2 787 267 67 16 chr15 796831 797146 -84898608 + L1MC4 LINE L1 7177 7507 -535 610 243 76 19 chr15 800053 800263 -84895491 + Charlie5 DNA MER1_type 2359 2580 -32 1428 99 5 19 chr15 801112 801325 -84894429 - AluSc SINE Alu -99 210 1 2288 81 3 3 chr15 801335 801644 -84894110 - AluY SINE Alu -2 309 1 2201 109 0 3 chr15 801691 801993 -84893761 - AluSx SINE Alu -11 301 1 2515 43 0 0 chr15 802048 802350 -84893404 - AluY SINE Alu -9 302 1 425 310 59 34 chr15 803453 803692 -84892062 - L1M4c LINE L1 -5029 1355 1111 1998 189 26 3 chr15 803709 804091 -84891663 + L1PBa LINE L1 1 391 -6472 2226 92 3 0 chr15 804104 804409 -84891345 - AluSx SINE Alu -1 311 6 21 0 0 0 chr15 805297 805318 -84890436 + AT_rich Low_complexity Low_complexity 1 21 0 596 75 0 0 chr15 805322 805402 -84890352 - L1MA1 LINE L1 0 6302 6223 2049 109 7 16 chr15 805741 806045 -84889709 - AluSx SINE Alu -11 301 1 979 106 56 0 chr15 806501 806643 -84889111 - AluSg/x SINE Alu -18 292 143 702 147 217 7 chr15 806643 806786 -84888968 + AluSc SINE Alu 132 304 -5 265 309 73 0 chr15 807346 807469 -84888285 + L1ME LINE L1 5597 5728 -393 1627 151 14 17 chr15 808222 808513 -84887241 + AluJb SINE Alu 1 290 -22 1670 164 0 36 chr15 808525 808805 -84886949 + AluJb SINE Alu 27 296 -16 2475 97 3 0 chr15 808832 809141 -84886613 + AluSx SINE Alu 1 310 -2 207 69 0 0 chr15 809191 809220 -84886534 + (A)n Simple_repeat Simple_repeat 1 29 0 879 158 168 11 chr15 810005 810195 -84885559 - AluJo SINE Alu -5 307 88 1935 117 28 24 chr15 810716 811006 -84884748 - AluJo SINE Alu -16 296 6 2388 103 0 0 chr15 811054 811356 -84884398 + AluSg SINE Alu 1 302 -8 1928 143 4 4 chr15 815326 815605 -84880149 + AluJo SINE Alu 1 279 -33 386 293 0 15 chr15 815775 815908 -84879846 + AluSq/x SINE Alu 1 131 -171 1197 154 0 16 chr15 816291 816479 -84879275 - AluJo SINE Alu -7 305 121 677 293 129 38 chr15 816993 817221 -84878533 + L1MB8 LINE L1 2900 3106 -3040 2269 112 0 10 chr15 817221 817559 -84878195 + AluSg SINE Alu 3 310 0 677 293 129 38 chr15 817559 817665 -84878089 + L1MB8 LINE L1 3106 3201 -2945 1597 106 204 4 chr15 817665 817920 -84877834 + AluSx SINE Alu 1 306 -6 677 293 129 38 chr15 817920 818001 -84877753 + L1MB8 LINE L1 3201 3354 -2792 3556 185 58 47 chr15 818004 818165 -84877589 + L1MB8 LINE L1 4784 4942 -1236 1636 234 88 47 chr15 818165 818746 -84877008 + MER77 LTR ERV1 1 605 0 3556 185 58 47 chr15 818746 818841 -84876913 + L1MB8 LINE L1 4942 5035 -1143 2385 110 0 0 chr15 818841 819142 -84876612 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 819142 819794 -84875960 + L1MB8 LINE L1 5035 5679 -499 1988 171 10 0 chr15 819794 820103 -84875651 + AluJo SINE Alu 1 312 0 3556 185 58 47 chr15 820103 820273 -84875481 + L1MB8 LINE L1 5679 5846 -332 2209 133 0 0 chr15 820273 820574 -84875180 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 820574 820850 -84874904 + L1MB8 LINE L1 5846 6151 -27 1475 164 0 0 chr15 820921 821141 -84874613 + AluJb SINE Alu 1 220 -92 352 219 68 0 chr15 821192 821265 -84874489 + MER2 DNA MER2_type 268 345 0 265 251 190 39 chr15 821276 821555 -84874199 + L1M4 LINE L1 4553 4873 -1273 233 292 11 0 chr15 821637 821726 -84874028 + L1M4 LINE L1 5043 5132 -1014 887 169 7 0 chr15 822522 822658 -84873096 + AluJo SINE Alu 1 137 -175 903 224 42 8 chr15 822882 823145 -84872609 + L1MA4 LINE L1 6027 6298 -2 1555 167 17 43 chr15 823186 823329 -84872425 + AluJo SINE Alu 1 146 -166 2459 81 0 10 chr15 823329 823639 -84872115 + AluSq SINE Alu 1 307 -6 1555 167 17 43 chr15 823639 823795 -84871959 + AluJo SINE Alu 146 292 -20 1944 69 15 15 chr15 824276 824581 -84871173 + AluY SINE Alu 42 311 0 313 213 53 75 chr15 824840 824934 -84870820 + L1MC4a LINE L1 6085 6176 -1632 2177 112 3 16 chr15 825069 825372 -84870382 + AluSq SINE Alu 1 299 -14 2363 106 0 3 chr15 825483 825785 -84869969 + AluSc SINE Alu 1 301 -8 2595 50 0 3 chr15 825785 826085 -84869669 + AluY SINE Alu 1 299 -12 1944 62 48 140 chr15 826208 826544 -84869210 + AluY SINE Alu 1 305 -6 495 280 16 0 chr15 826599 826724 -84869030 + Tigger3(Golem) DNA MER2_type 1 127 -2902 * 2223 151 17 14 chr15 826696 827112 -84868642 + Tigger3(Golem) DNA MER2_type 2277 2693 -336 216 0 0 0 chr15 827818 827842 -84867912 + (A)n Simple_repeat Simple_repeat 1 24 0 1712 185 45 0 chr15 827915 828245 -84867509 + MER7A DNA MER2_type 1 343 -3 610 246 108 10 chr15 828506 828701 -84867053 + MER58C DNA MER1_type 2 215 0 309 317 10 0 chr15 828739 828843 -84866911 - MER63 DNA MER1_type -815 246 142 2018 135 0 14 chr15 828965 829261 -84866493 - AluJo SINE Alu -16 296 5 725 184 77 41 chr15 829313 829441 -84866313 + MER3 DNA MER1_type 1 140 -69 2725 40 0 0 chr15 829441 829745 -84866009 - AluY SINE Alu -7 304 1 725 184 77 41 chr15 829745 829812 -84865942 + MER3 DNA MER1_type 140 203 -6 2653 68 3 0 chr15 830306 830616 -84865138 - AluY SINE Alu 0 311 1 2306 90 6 22 chr15 830617 830929 -84864825 - AluSc SINE Alu -2 307 1 306 286 91 74 chr15 830929 831759 -84863995 + L1ME3A LINE L1 4323 5137 -1033 1401 183 39 10 chr15 831759 832071 -84863683 + L1MA9 LINE L1 5992 6312 0 306 286 91 74 chr15 832071 832121 -84863633 + L1ME3A LINE L1 5137 5185 -985 1296 184 131 4 chr15 832121 832388 -84863366 + AluJo SINE Alu 1 301 -1 306 286 91 74 chr15 832388 832797 -84862957 + L1ME3A LINE L1 5185 5657 -513 533 330 28 1 chr15 832808 833098 -84862656 + L1ME3A LINE L1 5700 5995 -167 294 62 0 42 chr15 833623 833671 -84862083 - MADE1 DNA Mariner -1 79 34 267 326 88 42 chr15 833669 833725 -84862029 - MER3 DNA MER1_type -6 203 151 * 2329 93 3 19 chr15 833725 834035 -84861719 - AluSx SINE Alu -7 305 1 267 326 88 42 chr15 834035 834171 -84861583 - MER3 DNA MER1_type -58 151 2 1707 177 10 13 chr15 834453 834758 -84860996 + AluJo SINE Alu 1 304 -8 1831 159 6 41 chr15 834760 835075 -84860679 + AluJo SINE Alu 9 312 0 216 0 0 0 chr15 835689 835713 -84860041 + (A)n Simple_repeat Simple_repeat 1 24 0 873 266 82 43 chr15 836367 836856 -84858898 + MLT1J LTR MaLR 4 511 0 2040 124 17 7 chr15 836890 837181 -84858573 + AluSx SINE Alu 1 294 -18 1952 147 3 33 chr15 837186 837493 -84858261 - AluJo SINE Alu -14 298 1 2472 102 0 0 chr15 840088 840393 -84855361 + AluSx SINE Alu 1 305 -7 316 303 87 84 chr15 841622 841710 -84854044 + L1ME4a LINE L1 5630 5716 -405 2344 79 3 30 chr15 841710 842015 -84853739 - AluSx SINE Alu -15 297 1 316 303 87 84 chr15 842015 842157 -84853597 + L1ME4a LINE L1 5716 5856 -265 1958 145 13 7 chr15 842157 842460 -84853294 + AluJb SINE Alu 3 307 -5 316 303 87 84 chr15 842460 842491 -84853263 + L1ME4a LINE L1 5856 5885 -236 2257 117 0 0 chr15 842491 842782 -84852972 + AluSx SINE Alu 1 291 -21 316 303 87 84 chr15 842782 842841 -84852913 + L1ME4a LINE L1 5885 5953 -168 1263 239 131 40 chr15 844469 845316 -84850438 + L1MDb LINE L1 882 1761 -4779 246 251 36 84 chr15 845826 845993 -84849761 + L1MDb LINE L1 2212 2370 -4170 650 153 0 27 chr15 846001 846112 -84849642 + FLAM_A SINE Alu 22 129 -13 747 257 77 30 chr15 846125 846651 -84849103 + L1MDb LINE L1 2356 2910 -3630 1267 239 3 7 chr15 846655 846944 -84848810 + Tigger7 DNA MER2_type 4 291 -2196 968 228 199 3 chr15 846945 847252 -84848502 + Tigger7 DNA MER2_type 2121 2487 0 1730 151 46 57 chr15 848143 848510 -84847244 + L1MB3 LINE L1 5764 6126 -57 2181 104 0 20 chr15 848510 848808 -84846946 + AluSg SINE Alu 5 296 -14 1730 151 46 57 chr15 848808 848864 -84846890 + L1MB3 LINE L1 6126 6181 -2 2564 55 7 7 chr15 849906 850215 -84845539 + AluY SINE Alu 1 309 -2 716 163 205 6 chr15 850315 850481 -84845273 + MLT1B LTR MaLR 192 390 0 2096 122 38 0 chr15 852068 852355 -84843399 + AluSx SINE Alu 1 298 -14 225 108 0 0 chr15 852613 852650 -84843104 + (TG)n Simple_repeat Simple_repeat 2 38 0 1178 52 0 0 chr15 853353 853487 -84842267 + AluY SINE Alu 1 134 -177 2532 61 0 0 chr15 853487 853781 -84841973 + AluY SINE Alu 1 294 -17 2140 104 36 0 chr15 854225 854503 -84841251 - AluSq SINE Alu -10 303 16 335 313 71 47 chr15 857060 857129 -84838625 - L1MC/D LINE L1 -2303 5505 5439 2140 102 7 3 chr15 857129 857454 -84838300 - AluSx SINE Alu 0 326 1 335 313 71 47 chr15 857454 857512 -84838242 - L1MC/D LINE L1 -2369 5439 5384 1878 166 7 7 chr15 857512 857813 -84837941 - AluJb SINE Alu -11 301 1 335 313 71 47 chr15 857813 857894 -84837860 - L1MC/D LINE L1 -2424 5384 5290 2383 98 0 16 chr15 858519 858836 -84836918 - AluSp SINE Alu -1 312 1 346 237 13 0 chr15 859180 859256 -84836498 + L1MC4 LINE L1 7782 7858 -184 1971 120 56 0 chr15 859356 859627 -84836127 + AluSp SINE Alu 1 290 -23 531 0 0 0 chr15 859627 859686 -84836068 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1971 120 56 0 chr15 859686 859698 -84836056 + AluSp SINE Alu 290 300 -13 566 176 8 8 chr15 860173 860298 -84835456 - L1MA8 LINE L1 -12 6279 6155 564 127 15 8 chr15 860402 860536 -84835218 + (CA)n Simple_repeat Simple_repeat 1 135 0 325 260 57 32 chr15 860844 860967 -84834787 - MIR3 SINE MIR -50 158 33 1187 126 16 0 chr15 860984 861164 -84834590 - L1MA7 LINE L1 -315 5976 5791 315 0 0 0 chr15 861164 861199 -84834555 + (TG)n Simple_repeat Simple_repeat 2 36 0 1939 117 0 0 chr15 861306 861553 -84834201 + AluSx SINE Alu 3 249 -63 1172 214 63 0 chr15 861555 861793 -84833961 + Tigger3(Golem) DNA MER2_type 2777 3029 0 2112 150 45 18 chr15 862031 862194 -84833560 + MLT1B LTR MaLR 1 158 -232 2263 70 3 76 chr15 862194 862522 -84833232 + AluSp SINE Alu 1 304 -9 2112 150 45 18 chr15 862522 862738 -84833016 + MLT1B LTR MaLR 158 390 0 875 120 32 0 chr15 863885 864010 -84831744 + AluJo/FLAM SINE Alu 1 129 -173 2136 104 0 0 chr15 864012 864292 -84831462 + AluSx SINE Alu 32 311 -1 2344 154 42 27 chr15 864328 864736 -84831018 + MLT2D LTR ERVL 1 414 0 788 229 62 34 chr15 865733 866059 -84829695 + L1MEc LINE L1 2179 2485 -3730 3036 203 28 83 chr15 866093 866922 -84828832 + L1M4 LINE L1 4213 4981 -1165 2333 96 0 6 chr15 866922 867235 -84828519 + AluY SINE Alu 1 311 0 3036 203 28 83 chr15 867235 867384 -84828370 + L1M4 LINE L1 4981 5137 -1009 1603 167 6 63 chr15 867384 867518 -84828236 + AluJo SINE Alu 1 141 -171 2212 114 9 19 chr15 867518 867833 -84827921 + AluSp SINE Alu 1 312 -1 1603 167 6 63 chr15 867833 868015 -84827739 + AluJo SINE Alu 141 299 -13 264 54 0 0 chr15 868018 868055 -84827699 + L1M2 LINE L1 4558 4594 -1552 2380 166 7 18 chr15 868095 868281 -84827473 + L1M2 LINE L1 4563 4750 -1396 2472 78 0 3 chr15 868281 868588 -84827166 + AluSx SINE Alu 1 306 -6 2380 166 7 18 chr15 868588 868859 -84826895 + L1M2 LINE L1 4750 5015 -1131 1744 150 32 54 chr15 868859 868989 -84826765 + AluJb SINE Alu 1 132 -180 2299 103 0 0 chr15 868989 869281 -84826473 + AluSx SINE Alu 9 300 -12 1744 150 32 54 chr15 869281 869463 -84826291 + AluJb SINE Alu 132 306 -6 347 129 7 201 chr15 869466 869605 -84826149 - L1MB8 LINE L1 -140 6038 5927 962 162 6 0 chr15 869607 869786 -84825968 - L1MA6 LINE L1 -242 6058 5879 2798 140 55 2 chr15 869799 870422 -84825332 + L1M2 LINE L1 5102 5762 -529 729 157 37 30 chr15 870427 870561 -84825193 + AluJo SINE Alu 2 136 -176 2036 127 10 10 chr15 870575 870875 -84824879 + AluSx SINE Alu 1 300 -12 382 191 0 0 chr15 870932 871000 -84824754 + Tigger2 DNA MER2_type 2 69 -2649 * 2006 151 16 13 chr15 870989 871361 -84824393 + Tigger2 DNA MER2_type 2273 2645 -73 1436 62 150 0 chr15 871400 871593 -84824161 + AluSg/x SINE Alu 85 306 -6 2072 105 7 20 chr15 871600 871894 -84823860 + AluSq SINE Alu 1 290 -23 313 213 0 0 chr15 871894 871948 -84823806 + Tigger2 DNA MER2_type 2646 2702 -16 690 248 70 47 chr15 872063 872285 -84823469 - L1M4 LINE L1 -1543 4603 4388 2524 67 0 0 chr15 872285 872583 -84823171 - AluSg SINE Alu -12 298 1 690 248 70 47 chr15 872583 872615 -84823139 - L1M4 LINE L1 -1758 4388 4358 1451 169 59 53 chr15 872615 872952 -84822802 + MER44D DNA MER2_type 1 609 0 690 248 70 47 chr15 872952 872994 -84822760 - L1M4 LINE L1 -1788 4358 4299 2498 76 3 0 chr15 873045 873348 -84822406 + AluSp SINE Alu 1 304 -9 839 213 38 0 chr15 873355 873538 -84822216 - L1M4 LINE L1 -1827 4319 4130 2356 85 0 0 chr15 873680 874006 -84821748 + AluSq SINE Alu 5 330 0 304 243 30 109 chr15 874046 874197 -84821557 + L1ME LINE L1 5658 5791 -2017 2221 128 0 3 chr15 874197 874510 -84821244 + AluSx SINE Alu 1 312 0 304 243 30 109 chr15 874510 874560 -84821194 + L1ME LINE L1 5791 5843 -1965 254 167 0 0 chr15 874886 874934 -84820820 + L1ME LINE L1 5841 5888 -278 36 82 0 0 chr15 876262 876347 -84819407 + GC_rich Low_complexity Low_complexity 1 85 0 1141 219 8 4 chr15 926490 926727 -84769027 + HERVL74 LTR ERVL 1787 2024 -3661 1700 208 46 3 chr15 926729 927056 -84768698 - MLT1A1 LTR MaLR 0 365 25 1437 249 57 73 chr15 927059 927564 -84768190 - MLT-int LTR MaLR -633 1102 606 267 31 0 0 chr15 927579 927611 -84768143 + (TTCTCC)n Simple_repeat Simple_repeat 3 34 0 527 154 0 0 chr15 927611 927689 -84768065 - FRAM SINE Alu -31 145 68 3378 230 89 89 chr15 927789 928094 -84767660 + LTR35-int LTR ERV1 1655 1959 -4769 387 0 0 0 chr15 928094 928137 -84767617 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3378 230 89 89 chr15 928137 929692 -84766062 + LTR35-int LTR ERV1 1959 3513 -3215 1527 134 25 0 chr15 929692 929930 -84765824 + L1PA15 LINE L1 5914 6157 -8 3378 230 89 89 chr15 929930 929958 -84765796 + LTR35-int LTR ERV1 3513 3540 -3188 2044 119 31 0 chr15 929958 930244 -84765510 + AluSx SINE Alu 1 295 -17 3378 230 89 89 chr15 930244 930759 -84764995 + LTR35-int LTR ERV1 3540 4567 -2161 608 81 50 20 chr15 930768 930867 -84764887 - MER41B LTR ERV1 -86 549 448 1437 136 0 5 chr15 930867 931081 -84764673 - AluSq SINE Alu -19 294 82 1027 128 7 0 chr15 931081 931229 -84764525 - MER41B LTR ERV1 -182 453 305 2727 227 42 8 chr15 931243 931905 -84763849 + LTR35-int LTR ERV1 5106 5790 -541 392 166 69 97 chr15 931925 932070 -84763684 + LTR35-int LTR ERV1 5914 6054 -277 2047 167 36 44 chr15 932496 933057 -84762697 + LTR35 LTR ERV1 1 618 0 2234 241 47 2 chr15 933059 933549 -84762205 + MSTD-int LTR MaLR 1224 1735 0 786 191 111 35 chr15 933549 933874 -84761880 + MSTD LTR MaLR 1 420 -8 618 212 109 2 chr15 934079 934249 -84761505 + MER61E LTR ERV1 342 774 -20 1007 162 133 54 chr15 934289 934530 -84761224 + MER61E-int LTR ERV1 30 289 -6707 3984 245 38 40 chr15 934630 935904 -84759850 + MER61E-int LTR ERV1 479 1749 -5247 12769 167 60 63 chr15 935913 937587 -84758167 + MER61E-int LTR ERV1 2116 3339 -3657 2241 115 0 22 chr15 937587 937901 -84757853 - AluSc SINE Alu -2 307 1 12769 167 60 63 chr15 937901 939348 -84756406 + MER61E-int LTR ERV1 3339 4789 -2207 971 176 16 21 chr15 939492 939679 -84756075 + MER61E LTR ERV1 341 526 -43 1409 325 47 16 chr15 939725 940233 -84755521 + HERVL74 LTR ERVL 414 937 -4748 228 67 0 0 chr15 940370 940400 -84755354 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 8765 156 27 20 chr15 940569 940625 -84755129 + MER61E-int LTR ERV1 2479 2533 -4463 2198 136 0 0 chr15 940625 940927 -84754827 + AluSg SINE Alu 1 302 -8 8765 156 27 20 chr15 940927 942654 -84753100 + MER61E-int LTR ERV1 2533 6993 -3 251 175 0 111 chr15 942897 942960 -84752794 + MER61E LTR ERV1 99 154 -415 2639 212 16 12 chr15 943101 943663 -84752091 - MLT1A1-int LTR MaLR -1168 567 4 1595 239 28 3 chr15 943667 944022 -84751732 - MLT1A1 LTR MaLR 0 365 2 979 270 61 0 chr15 944023 944301 -84751453 + HERVL74 LTR ERVL 3130 3424 -2261 1107 243 67 13 chr15 944312 944612 -84751142 + HERVL74 LTR ERVL 3536 3851 -1834 539 70 0 0 chr15 944880 944951 -84750803 - L1PA5 LINE L1 -209 5945 5875 1149 91 0 0 chr15 945051 945194 -84750560 - AluY SINE Alu -168 143 1 771 261 147 12 chr15 945194 945528 -84750226 - L1M4 LINE L1 -938 5208 4830 331 130 0 0 chr15 945554 945608 -84750146 - L1MA5A LINE L1 -2 6295 6242 2029 142 3 3 chr15 945608 945917 -84749837 - AluSx SINE Alu -3 309 1 1982 129 3 29 chr15 945931 946242 -84749512 - AluJb SINE Alu -9 303 1 572 116 30 2 chr15 946242 946338 -84749416 - L1MC/D LINE L1 -672 5625 5520 423 138 0 0 chr15 946393 946458 -84749296 + L1MA5A LINE L1 6183 6247 -50 771 192 8 0 chr15 946467 946597 -84749157 - AluSg/x SINE Alu -49 263 133 2175 109 0 3 chr15 946597 946911 -84748843 - AluSx SINE Alu 0 313 1 2299 82 7 0 chr15 946933 947251 -84748503 - AluSg SINE Alu 0 320 1 2064 98 47 0 chr15 947787 948062 -84747692 + AluSx SINE Alu 13 300 -12 404 234 76 21 chr15 949560 949705 -84746049 - MIR SINE MIR -109 153 1 389 287 17 17 chr15 949958 950073 -84745681 - L1ME LINE L1 -441 5680 5566 2176 117 27 3 chr15 950149 950448 -84745306 - AluSx SINE Alu -6 306 1 1879 136 3 81 chr15 950455 950656 -84745098 - AluJo SINE Alu 0 312 146 2227 101 3 7 chr15 950656 950964 -84744790 - AluSg SINE Alu -3 307 1 1879 136 3 81 chr15 950964 951094 -84744660 - AluJo SINE Alu -166 146 7 236 88 0 0 chr15 951305 951339 -84744415 - Alu SINE Alu -267 34 1 780 229 28 0 chr15 951446 951625 -84744129 + MER5A DNA MER1_type 6 189 0 2223 118 0 7 chr15 951942 952246 -84743508 - AluSg SINE Alu -8 302 1 338 213 53 0 chr15 952248 952342 -84743412 - MIR SINE MIR -147 115 17 1954 143 0 17 chr15 953348 953649 -84742105 + AluJb SINE Alu 1 296 -16 1338 147 117 57 chr15 954012 954158 -84741596 + AluJo SINE Alu 1 137 -175 2227 109 24 0 chr15 954158 954452 -84741302 + AluSg SINE Alu 1 301 -9 1338 147 117 57 chr15 954452 954570 -84741184 + AluJo SINE Alu 137 281 -31 200 83 0 28 chr15 954571 954607 -84741147 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1942 140 11 49 chr15 954717 955066 -84740688 - MER1B DNA MER1_type 0 337 2 986 188 28 0 chr15 955790 955966 -84739788 + FRAM SINE Alu 1 176 0 539 181 0 38 chr15 955975 956135 -84739619 + GA-rich Low_complexity Low_complexity 3 156 0 232 190 210 30 chr15 956418 956518 -84739236 + MLT1K LTR MaLR 125 242 -346 242 286 8 48 chr15 956677 956803 -84738951 + MLT1K LTR MaLR 457 577 -11 2321 129 0 0 chr15 957883 958194 -84737560 - AluSx SINE Alu -1 311 1 1509 169 12 0 chr15 958302 958556 -84737198 + AluJb SINE Alu 51 307 -5 1824 155 54 0 chr15 958632 958910 -84736844 + AluJo SINE Alu 3 295 -17 334 230 0 46 chr15 959001 959088 -84736666 + MLT1F1 LTR MaLR 62 144 -449 2784 84 0 0 chr15 959115 959470 -84736284 - THE1A LTR MaLR 0 355 1 445 276 125 0 chr15 959475 959627 -84736127 + MLT1F1 LTR MaLR 121 291 -276 1174 93 0 13 chr15 959628 959778 -84735976 + AluSq/x SINE Alu 2 149 -163 213 39 0 0 chr15 959800 959826 -84735928 + (A)n Simple_repeat Simple_repeat 1 26 0 864 209 141 30 chr15 959826 960089 -84735665 + MLT1F1 LTR MaLR 276 567 0 251 289 0 48 chr15 960097 960180 -84735574 - MLT1J LTR MaLR -431 80 2 542 159 23 15 chr15 960263 960395 -84735359 + CT-rich Low_complexity Low_complexity 3 135 0 833 161 23 0 chr15 960409 960539 -84735215 - FLAM_C SINE Alu 0 133 1 3216 157 11 14 chr15 960575 961137 -84734617 + LTR31 LTR ERV1 60 619 0 252 259 24 35 chr15 961144 961229 -84734525 + MIR SINE MIR 156 239 -23 221 0 35 0 chr15 961251 961280 -84734474 + (TTA)n Simple_repeat Simple_repeat 2 31 0 967 104 0 15 chr15 961280 961408 -84734346 - AluSp SINE Alu -185 128 1 2289 97 33 0 chr15 961590 961889 -84733865 - AluSx SINE Alu -1 311 3 231 287 202 0 chr15 961943 962072 -84733682 - MIR3 SINE MIR -3 205 51 1904 112 15 8 chr15 962172 962439 -84733315 + AluSx SINE Alu 33 301 -11 2329 121 0 3 chr15 963040 963353 -84732401 + AluSx SINE Alu 1 312 0 2071 122 28 0 chr15 963421 963707 -84732047 + AluSx SINE Alu 1 294 -18 1078 169 0 17 chr15 963991 964163 -84731591 + FAM SINE Alu 1 169 -6 1822 190 0 3 chr15 964225 964536 -84731218 + AluJo SINE Alu 1 310 -2 209 195 0 0 chr15 964611 964652 -84731102 + (TG)n Simple_repeat Simple_repeat 1 41 0 2409 103 0 25 chr15 964718 965038 -84730716 + AluSx SINE Alu 1 312 0 1560 39 6 0 chr15 965160 965338 -84730416 - AluY SINE Alu -132 179 1 1198 15 0 0 chr15 965376 965509 -84730245 + AluY SINE Alu 176 308 -3 2531 39 0 0 chr15 966883 967189 -84728565 - AluY SINE Alu 0 306 1 674 281 35 5 chr15 967539 967738 -84728016 + MIR SINE MIR 10 214 -48 1420 92 5 0 chr15 968102 968309 -84727445 - L1MA3 LINE L1 0 6305 6098 2408 69 0 13 chr15 968546 968852 -84726902 - AluY SINE Alu -9 302 1 27 49 0 0 chr15 969319 969360 -84726394 + AT_rich Low_complexity Low_complexity 1 41 0 2455 66 0 0 chr15 969632 969935 -84725819 - AluY SINE Alu -8 303 1 525 173 0 0 chr15 970195 970276 -84725478 + AluSg/x SINE Alu 216 296 -16 677 149 174 8 chr15 970404 970525 -84725229 + AluJo SINE Alu 2 142 -170 2093 148 0 0 chr15 970529 970820 -84724934 + AluSq SINE Alu 6 296 -17 2097 218 64 56 chr15 970911 971331 -84724423 - MER82 DNA MER2_type -3 650 235 2573 77 0 3 chr15 971331 971643 -84724111 - AluY SINE Alu 0 311 1 2134 121 10 0 chr15 971645 971935 -84723819 - AluSx SINE Alu -19 293 1 2097 218 64 56 chr15 971935 972120 -84723634 - MER82 DNA MER2_type -418 235 37 216 339 83 0 chr15 972153 972262 -84723492 - MIR3 SINE MIR -46 162 45 241 295 57 9 chr15 972588 972693 -84723061 + MIR SINE MIR 40 149 -113 2447 71 0 3 chr15 972702 972996 -84722758 - AluSc SINE Alu -16 293 1 190 222 0 0 chr15 973126 973162 -84722592 - MIR SINE MIR -59 149 114 211 252 19 107 chr15 973381 973484 -84722270 - L2 LINE L2 -1 3271 3178 1040 192 56 14 chr15 973696 973744 -84722010 + MER58A DNA MER1_type 2 47 -2373 2456 77 7 0 chr15 973744 974041 -84721713 - AluY SINE Alu -12 299 1 1040 192 56 14 chr15 974041 974206 -84721548 + MER58A DNA MER1_type 47 224 0 309 337 20 0 chr15 974208 974309 -84721445 + L2 LINE L2 3191 3293 -20 445 311 33 7 chr15 974769 974920 -84720834 + MIR SINE MIR 34 188 -74 396 269 19 31 chr15 975368 975545 -84720209 + MIR3 SINE MIR 10 183 -68 197 318 153 0 chr15 975664 975749 -84720005 - L2 LINE L2 0 3272 3175 2494 90 0 3 chr15 975839 976151 -84719603 + AluSx SINE Alu 1 311 -1 2092 107 32 0 chr15 977078 977359 -84718395 + AluSx SINE Alu 1 290 -22 495 286 0 0 chr15 977585 977697 -84718057 - MIR SINE MIR -70 192 81 408 304 122 0 chr15 977758 977906 -84717848 - MIR SINE MIR -53 209 44 1769 200 99 38 chr15 977927 978224 -84717530 - MLT1D LTR MaLR 0 505 167 2133 101 35 3 chr15 978224 978512 -84717242 + AluSx SINE Alu 1 297 -15 1769 200 99 38 chr15 978512 978690 -84717064 - MLT1D LTR MaLR -338 167 1 240 283 0 0 chr15 978690 978743 -84717011 - L2 LINE L2 -10 3262 3210 603 239 0 0 chr15 978785 978915 -84716839 - L1PB4 LINE L1 -3 6153 6024 2271 77 11 0 chr15 978941 979227 -84716527 - AluSx SINE Alu -23 289 1 2040 153 0 3 chr15 979229 979523 -84716231 - AluJb SINE Alu -18 294 2 907 160 6 12 chr15 979581 979750 -84716004 - L1PB4 LINE L1 -159 5997 5830 484 157 372 8 chr15 979750 979871 -84715883 - MER5A DNA MER1_type -8 181 17 2410 83 3 10 chr15 979873 980187 -84715567 - AluSq SINE Alu -1 312 1 335 311 0 0 chr15 980216 980306 -84715448 - MER58 DNA MER1_type -251 90 1 522 202 0 48 chr15 980308 980432 -84715322 + L2 LINE L2 3191 3308 -5 303 287 11 0 chr15 981393 981487 -84714267 - MER58 DNA MER1_type -291 95 1 1594 218 99 7 chr15 981621 982044 -84713710 - MLT1C LTR MaLR 0 467 6 1020 298 90 23 chr15 982232 982470 -84713284 + MLT1K LTR MaLR 2 223 -365 1909 122 0 57 chr15 982470 982766 -84712988 - AluSx SINE Alu -33 279 1 1020 298 90 23 chr15 982766 983048 -84712706 + MLT1K LTR MaLR 223 557 -31 1994 131 0 54 chr15 983470 983784 -84711970 + AluJo SINE Alu 1 297 -15 2197 131 13 0 chr15 984030 984336 -84711418 + AluSx SINE Alu 3 312 0 1673 175 29 4 chr15 984403 984677 -84711077 - AluJo SINE Alu -31 281 1 207 289 0 0 chr15 984830 984875 -84710879 + MIR SINE MIR 193 237 -25 1704 208 0 0 chr15 985070 985354 -84710400 - AluJb SINE Alu -28 284 1 1989 155 3 3 chr15 986151 986454 -84709300 + AluJo SINE Alu 3 305 -7 400 143 0 0 chr15 986654 986717 -84709037 - AluJ/FLAM SINE Alu -248 64 2 510 252 122 2 chr15 986718 986941 -84708813 - L1 LINE L1 -3250 2896 2645 247 176 55 33 chr15 986942 987011 -84708743 + (TATATG)n Simple_repeat Simple_repeat 4 77 -19 2092 84 0 18 chr15 987011 987286 -84708468 + AluY SINE Alu 31 300 -11 247 176 55 33 chr15 987286 987307 -84708447 + (TATATG)n Simple_repeat Simple_repeat 77 96 0 2356 71 0 49 chr15 987307 987615 -84708139 + AluY SINE Alu 1 293 -18 301 238 133 0 chr15 987617 987722 -84708032 - L1 LINE L1 -3460 2686 2568 1332 106 106 0 chr15 988692 988900 -84706854 + MER30 DNA MER1_type 1 230 0 1675 142 92 0 chr15 989883 990144 -84705610 - AluJb SINE Alu -19 293 9 908 281 128 18 chr15 991156 991445 -84704309 - L1ME2 LINE L1 -112 6052 5796 1896 162 10 3 chr15 991445 991753 -84704001 - AluJb SINE Alu 0 312 3 908 281 128 18 chr15 991753 991962 -84703792 - L1ME2 LINE L1 -368 5796 5499 2262 125 3 0 chr15 992501 992813 -84702941 - AluSp SINE Alu 0 313 1 2172 136 0 0 chr15 992833 993135 -84702619 - AluSx SINE Alu -10 302 1 208 100 0 143 chr15 993894 993964 -84701790 + (GGGTG)n Simple_repeat Simple_repeat 4 63 0 232 203 51 38 chr15 994672 994751 -84701003 + Charlie5 DNA MER1_type 45 124 -2488 * 986 255 3 10 chr15 994732 995042 -84700712 + Charlie5 DNA MER1_type 2222 2529 -83 469 169 0 12 chr15 995042 995125 -84700629 - AluJb SINE Alu -18 294 213 492 233 33 0 chr15 995222 995342 -84700412 + MIR3 SINE MIR 51 174 -34 503 62 0 25 chr15 995716 995797 -84699957 + Alu SINE Alu 232 310 -2 1544 121 159 8 chr15 996414 996671 -84699083 - AluSx SINE Alu -5 297 2 201 74 0 0 chr15 996698 996725 -84699029 + (T)n Simple_repeat Simple_repeat 1 27 0 453 306 2 4 chr15 997099 997623 -84698131 + CT-rich Low_complexity Low_complexity 1 523 0 421 299 0 0 chr15 997651 997973 -84697781 + CT-rich Low_complexity Low_complexity 1 322 0 427 294 0 22 chr15 998042 998226 -84697528 + CT-rich Low_complexity Low_complexity 1 180 0 486 314 1 17 chr15 998298 998910 -84696844 + CT-rich Low_complexity Low_complexity 1 602 0 219 317 195 0 chr15 999463 999586 -84696168 - MIR3 SINE MIR -9 199 53 1209 117 17 22 chr15 999925 1000104 -84695650 - AluSp SINE Alu 0 313 136 547 260 157 20 chr15 1000239 1000443 -84695311 - MIR SINE MIR -10 252 21 261 83 0 0 chr15 1000637 1000673 -84695081 + (CA)n Simple_repeat Simple_repeat 2 37 0 318 261 67 25 chr15 1002064 1002183 -84693571 - L2 LINE L2 -3 3310 3187 205 282 176 0 chr15 1002180 1002265 -84693489 - MIR3 SINE MIR 0 208 109 * 375 293 64 29 chr15 1002323 1002463 -84693291 - MIR SINE MIR -70 192 48 695 92 0 0 chr15 1004958 1005045 -84690709 + AluS SINE Alu 1 87 -226 2518 77 0 0 chr15 1005160 1005458 -84690296 + AluSg SINE Alu 1 298 -12 2206 107 0 13 chr15 1005708 1006016 -84689738 - AluSc SINE Alu -5 304 1 401 256 60 53 chr15 1006106 1006391 -84689363 - L1M4 LINE L1 -2186 3960 3674 2536 63 0 3 chr15 1006397 1006698 -84689056 - AluY SINE Alu -11 300 1 201 241 35 0 chr15 1006903 1006961 -84688793 + (TA)n Simple_repeat Simple_repeat 2 61 0 937 10 0 0 chr15 1007629 1007733 -84688021 - AluYa5/8 SINE Alu -3 307 204 2529 58 0 0 chr15 1007735 1008029 -84687725 - AluY SINE Alu -17 294 1 348 186 0 0 chr15 1008146 1008205 -84687549 - Tigger3(Golem) DNA MER2_type -1 3028 2970 805 176 85 0 chr15 1008241 1008394 -84687360 - FRAM SINE Alu -10 166 1 1967 138 233 2 chr15 1008396 1008830 -84686924 - Tigger3(Golem) DNA MER2_type -53 2976 2443 1853 149 11 3 chr15 1009281 1009563 -84686191 - AluJb SINE Alu -20 292 9 264 217 87 0 chr15 1009740 1009809 -84685945 - MIR SINE MIR -26 236 162 1886 163 17 0 chr15 1009809 1010109 -84685645 - AluJb SINE Alu -7 305 1 604 137 0 20 chr15 1010439 1010541 -84685213 - FLAM_A SINE Alu 0 142 43 315 49 0 0 chr15 1011061 1011102 -84684652 + (CA)n Simple_repeat Simple_repeat 1 41 0 459 255 57 14 chr15 1012238 1012379 -84683375 - MIR SINE MIR -66 196 50 1708 147 20 14 chr15 1014199 1014491 -84681263 + AluJo SINE Alu 1 294 -18 365 100 0 17 chr15 1014491 1014551 -84681203 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 3795 212 36 42 chr15 1014579 1014830 -84680924 + L1ME1 LINE L1 4947 5198 -968 2233 85 0 7 chr15 1014830 1015136 -84680618 + AluSg SINE Alu 1 304 -6 3795 212 36 42 chr15 1015136 1016114 -84679640 + L1ME1 LINE L1 5198 6161 -5 1581 100 129 30 chr15 1017704 1017975 -84677779 - AluSg SINE Alu -12 298 1 228 313 102 16 chr15 1018149 1018277 -84677477 + MIR SINE MIR 111 249 -13 2062 116 0 0 chr15 1018436 1018730 -84677024 - AluSq SINE Alu -18 295 2 200 206 0 0 chr15 1019394 1019428 -84676326 + polypyrimidine Low_complexity Low_complexity 3 36 0 24 32 0 0 chr15 1019628 1019659 -84676095 + AT_rich Low_complexity Low_complexity 1 31 0 1399 180 36 46 chr15 1019925 1020231 -84675523 - AluJo SINE Alu -9 303 1 208 233 11 111 chr15 1021950 1022040 -84673714 + L2 LINE L2 3190 3270 -2 27 0 0 0 chr15 1022614 1022641 -84673113 + AT_rich Low_complexity Low_complexity 1 27 0 1428 183 29 7 chr15 1023376 1023649 -84672105 + LTR15 LTR ERV1 209 487 -6 545 207 9 9 chr15 1023715 1023831 -84671923 + AluJb SINE Alu 2 117 -195 1514 157 3 35 chr15 1023832 1024145 -84671609 - AluSp SINE Alu -10 303 1 392 125 16 0 chr15 1024171 1024235 -84671519 + AluJb SINE Alu 52 116 -186 1534 157 9 46 chr15 1024237 1024561 -84671193 - AluSp SINE Alu -1 312 1 836 105 8 8 chr15 1024567 1024700 -84671054 - AluSp SINE Alu -180 133 1 577 179 8 8 chr15 1024728 1024845 -84670909 + FLAM_C SINE Alu 1 117 -16 1608 131 13 33 chr15 1024852 1025158 -84670596 - AluSp SINE Alu -13 300 1 1298 173 12 80 chr15 1025185 1025296 -84670458 + AluJb SINE Alu 1 118 -184 1568 149 7 23 chr15 1025296 1025604 -84670150 - AluSp SINE Alu -10 303 1 1298 173 12 80 chr15 1025604 1025816 -84669938 + AluJb SINE Alu 118 302 0 413 191 75 125 chr15 1026437 1026656 -84669098 + L1MC5 LINE L1 7609 7809 -152 2039 135 0 6 chr15 1026656 1026968 -84668786 + AluSq SINE Alu 1 310 -3 413 191 75 125 chr15 1026968 1027068 -84668686 + L1MC5 LINE L1 7809 7912 -49 433 318 112 52 chr15 1027725 1028011 -84667743 + L1ME4a LINE L1 5621 5923 -198 1657 150 7 7 chr15 1028235 1028515 -84667239 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr15 1028518 1028545 -84667209 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1306 208 0 4 chr15 1028585 1028830 -84666924 + AluJo SINE Alu 1 244 -68 43 56 0 0 chr15 1029571 1029642 -84666112 + AT_rich Low_complexity Low_complexity 1 71 0 21 36 0 0 chr15 1030099 1030127 -84665627 + AT_rich Low_complexity Low_complexity 1 28 0 261 57 0 0 chr15 1033370 1033405 -84662349 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 965 155 0 0 chr15 1034546 1034701 -84661053 - 7SLRNA srpRNA srpRNA -71 249 95 371 257 175 6 chr15 1035457 1035633 -84660121 - MIR SINE MIR -6 256 45 1720 133 0 86 chr15 1035646 1035970 -84659784 - AluSx SINE Alu -15 297 2 190 241 22 0 chr15 1036512 1036558 -84659196 - MIR SINE MIR -58 150 103 390 42 0 0 chr15 1036867 1036915 -84658839 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 222 216 39 0 chr15 1037051 1037102 -84658652 - MIR SINE MIR -61 147 95 519 302 1 21 chr15 1037439 1038220 -84657534 + CT-rich Low_complexity Low_complexity 1 765 0 533 249 0 38 chr15 1038231 1038416 -84657338 + CT-rich Low_complexity Low_complexity 1 178 0 2199 67 0 3 chr15 1038619 1038937 -84656817 + AluY SINE Alu 1 317 0 184 340 113 0 chr15 1038973 1039079 -84656675 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 1039421 1039544 -84656210 - MIR3 SINE MIR -9 199 53 2010 138 3 0 chr15 1039890 1040202 -84655552 - AluSp SINE Alu 0 313 1 528 234 188 20 chr15 1040337 1040534 -84655220 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 1042134 1042248 -84653506 - L2 LINE L2 -3 3310 3188 397 309 66 0 chr15 1042385 1042521 -84653233 - MIR SINE MIR -70 192 48 257 258 0 0 chr15 1044450 1044512 -84651242 + G-rich Low_complexity Low_complexity 4 65 0 1872 128 3 14 chr15 1045036 1045325 -84650429 + AluSx SINE Alu 1 286 -26 495 33 0 0 chr15 1045326 1045387 -84650367 + (CA)n Simple_repeat Simple_repeat 2 62 0 790 151 68 14 chr15 1045773 1045919 -84649835 + MER5A DNA MER1_type 3 156 -33 1347 182 37 15 chr15 1046664 1046933 -84648821 + AluJo SINE Alu 1 275 -37 314 255 61 36 chr15 1047042 1047303 -84648451 + L1P5 LINE L1 5174 5443 -711 2006 117 3 0 chr15 1047947 1048301 -84647453 - AluSx SINE Alu 0 355 1 691 216 96 0 chr15 1048479 1048646 -84647108 + MER5A DNA MER1_type 5 187 -2 655 296 25 37 chr15 1048876 1049197 -84646557 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 1049694 1049771 -84645983 - L1M4 LINE L1 -1310 4836 4750 2193 74 3 7 chr15 1049788 1050087 -84645667 - AluY SINE Alu -13 298 1 909 310 168 14 chr15 1050824 1051439 -84644315 - L2 LINE L2 -251 3062 2353 233 269 60 0 chr15 1051615 1051682 -84644072 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 1052300 1052688 -84643066 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 1052692 1052805 -84642949 + AluJo SINE Alu 2 105 -207 1650 138 0 47 chr15 1052805 1053123 -84642631 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 1053123 1053236 -84642518 + AluJo SINE Alu 105 220 -92 243 0 0 0 chr15 1053263 1053290 -84642464 + (TC)n Simple_repeat Simple_repeat 2 28 0 1292 187 3 27 chr15 1053290 1053584 -84642170 - AluSp SINE Alu -20 293 7 1777 96 10 83 chr15 1053596 1053909 -84641845 - AluSx SINE Alu -1 311 22 575 161 8 17 chr15 1053916 1054034 -84641720 + FLAM_C SINE Alu 1 117 -16 1498 133 13 33 chr15 1054045 1054347 -84641407 - AluSp SINE Alu -17 296 1 763 233 46 32 chr15 1054375 1054503 -84641251 + AluJo SINE Alu 1 135 -177 1825 112 0 21 chr15 1054503 1054790 -84640964 - AluSq SINE Alu -16 297 17 763 233 46 32 chr15 1054790 1054880 -84640874 + AluJo SINE Alu 135 222 -90 1214 69 11 17 chr15 1054922 1055119 -84640635 - AluSg/x SINE Alu 0 308 113 411 246 152 57 chr15 1055408 1055485 -84640269 + L1M4 LINE L1 2128 2196 -3950 1978 98 20 23 chr15 1055485 1055790 -84639964 + AluSg SINE Alu 7 310 0 411 246 152 57 chr15 1055790 1056359 -84639395 + L1M4 LINE L1 2196 2835 -3311 1375 122 77 12 chr15 1057373 1057620 -84638134 - L1PA10 LINE L1 -2 6166 5904 367 186 21 0 chr15 1057646 1057743 -84638011 + (TATATG)n Simple_repeat Simple_repeat 5 103 0 301 300 100 0 chr15 1057743 1057853 -84637901 + L1MC4 LINE L1 6583 6703 -1339 * 402 342 43 39 chr15 1057847 1058081 -84637673 + L1MC4 LINE L1 6468 6702 -1340 200 345 0 0 chr15 1058596 1058651 -84637103 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 1058870 1059179 -84636575 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 1059374 1059499 -84636255 - MER103 DNA DNA -20 146 2 830 183 61 96 chr15 1059716 1060028 -84635726 + AluYa5 SINE Alu 1 301 0 566 294 44 27 chr15 1060029 1060103 -84635651 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 1060103 1060493 -84635261 + MLT1A1 LTR MaLR 1 365 0 566 294 44 27 chr15 1060493 1060714 -84635040 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 1060726 1060845 -84634909 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 1060851 1060874 -84634880 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1541 161 68 14 chr15 1060923 1061203 -84634551 - AluJb SINE Alu -17 295 1 287 238 16 0 chr15 1061430 1061493 -84634261 - MIR SINE MIR -112 150 87 1618 174 17 37 chr15 1061708 1062006 -84633748 - AluJo SINE Alu -20 292 1 232 275 25 0 chr15 1062017 1062097 -84633657 - L1MC4 LINE L1 -1352 6690 6609 905 220 30 56 chr15 1062261 1062565 -84633189 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 1062738 1062774 -84632980 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 471 148 0 0 chr15 1062774 1062862 -84632892 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 2116 131 3 6 chr15 1063336 1063649 -84632105 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 1063739 1063795 -84631959 + MER3 DNA MER1_type 1 56 -153 803 207 53 0 chr15 1063806 1063975 -84631779 + AluJb SINE Alu 133 310 -2 307 290 106 68 chr15 1063975 1064182 -84631572 + L1MEd LINE L1 931 1145 -4974 2100 117 0 0 chr15 1064219 1064528 -84631226 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 1064837 1064891 -84630863 + (CA)n Simple_repeat Simple_repeat 2 54 0 367 271 57 62 chr15 1067066 1067258 -84628496 + MIR SINE MIR 2 192 -70 291 296 156 7 chr15 1068200 1068335 -84627419 + MIR3 SINE MIR 31 185 -23 338 246 76 25 chr15 1068354 1068472 -84627282 + L2 LINE L2 3146 3269 -3 494 231 141 40 chr15 1070071 1070281 -84625473 + MIR SINE MIR 16 252 -10 220 216 39 0 chr15 1071256 1071307 -84624447 + MIR SINE MIR 95 147 -61 240 35 0 0 chr15 1071444 1071473 -84624281 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 187 268 0 0 chr15 1071808 1071849 -84623905 + MIR SINE MIR 110 150 -58 1861 127 0 86 chr15 1072388 1072712 -84623042 + AluSx SINE Alu 2 297 -15 374 226 144 15 chr15 1072725 1072885 -84622869 + MIR SINE MIR 45 231 -31 968 174 0 0 chr15 1073657 1073812 -84621942 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 1078729 1078754 -84617000 + AT_rich Low_complexity Low_complexity 1 25 0 1520 191 0 0 chr15 1079324 1079570 -84616184 - AluJo SINE Alu -66 246 1 1961 149 10 0 chr15 1079613 1079914 -84615840 - AluSx SINE Alu -8 304 1 237 339 16 8 chr15 1081247 1081374 -84614380 - L2 LINE L2 -2375 939 812 211 262 262 21 chr15 1081598 1081743 -84614011 + MIR SINE MIR 53 232 -30 1752 115 11 11 chr15 1084390 1084650 -84611104 - THE1C LTR MaLR 0 375 116 26 0 0 0 chr15 1084659 1084685 -84611069 + AT_rich Low_complexity Low_complexity 1 26 0 1052 186 67 0 chr15 1084710 1084903 -84610851 - MER2 DNA MER2_type -139 206 1 2614 49 0 7 chr15 1086494 1086799 -84608955 - AluY SINE Alu -6 305 3 2218 66 3 24 chr15 1087008 1087325 -84608429 - AluY SINE Alu 0 311 1 446 314 115 57 chr15 1087606 1088164 -84607590 + L2 LINE L2 1602 2191 -1123 647 200 123 0 chr15 1088262 1088417 -84607337 + MER58B DNA MER1_type 167 340 -1 302 254 109 52 chr15 1088982 1089175 -84606579 - L1MC4a LINE L1 -1932 5876 5673 28 0 0 0 chr15 1089459 1089487 -84606267 + AT_rich Low_complexity Low_complexity 1 28 0 1914 257 89 6 chr15 1090172 1090803 -84604951 + L1 LINE L1 2046 2726 -3420 662 212 155 21 chr15 1090843 1090958 -84604796 + AluJb SINE Alu 2 100 -212 1521 139 56 21 chr15 1090958 1091126 -84604628 - AluSp SINE Alu -5 298 114 270 0 0 0 chr15 1091126 1091156 -84604598 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1521 139 56 21 chr15 1091156 1091274 -84604480 - AluSp SINE Alu -189 114 2 662 212 155 21 chr15 1091274 1091351 -84604403 + AluJb SINE Alu 100 220 -92 1292 142 88 61 chr15 1091382 1091678 -84604076 - AluSp SINE Alu -9 304 1 904 260 94 76 chr15 1092398 1092621 -84603133 - L1ME3A LINE L1 -6 6164 5946 2160 96 3 7 chr15 1092621 1092914 -84602840 - AluSc SINE Alu -17 292 1 904 260 94 76 chr15 1092914 1093263 -84602491 - L1ME3A LINE L1 -224 5946 5576 2482 48 3 35 chr15 1093263 1093573 -84602181 + AluY SINE Alu 1 300 -11 904 260 94 76 chr15 1093573 1093683 -84602071 - L1ME3A LINE L1 -594 5576 5469 1845 234 68 12 chr15 1093688 1094171 -84601583 - MLT2B1 LTR ERVL -10 510 1 2813 233 46 25 chr15 1094174 1095069 -84600685 - ERVL LTR ERVL -3 5651 4773 1562 226 122 88 chr15 1095104 1095824 -84599930 - LTR1B LTR ERV1 -81 745 1 18794 201 34 18 chr15 1095824 1097924 -84597830 - ERVL LTR ERVL -949 4815 2623 1225 167 14 14 chr15 1097924 1098134 -84597620 + MER6B DNA MER2_type 1 210 0 18794 201 34 18 chr15 1098134 1099791 -84595963 - ERVL LTR ERVL -3141 2623 995 367 214 51 31 chr15 1099792 1099858 -84595896 + MER4-int LTR ERV1 351 421 -7699 314 61 20 0 chr15 1099858 1099907 -84595847 + (TG)n Simple_repeat Simple_repeat 1 50 0 367 214 51 31 chr15 1099907 1099938 -84595816 + MER4-int LTR ERV1 421 450 -7670 6925 153 58 35 chr15 1100011 1101392 -84594362 + MER4-int LTR ERV1 451 1863 -6257 815 182 25 106 chr15 1101407 1101597 -84594157 + MER4-int LTR ERV1 2346 2550 -4048 2433 64 0 0 chr15 1101597 1101894 -84593860 - AluY SINE Alu -14 297 1 815 182 25 106 chr15 1101894 1102072 -84593682 + MER4-int LTR ERV1 2550 3710 -2888 1893 150 40 52 chr15 1102082 1102429 -84593325 + MER61A LTR ERV1 1 343 0 263 245 41 31 chr15 1102431 1102529 -84593225 + MER61A-int LTR ERV1 3 101 -5116 1409 118 78 108 chr15 1102749 1102907 -84592847 + MER61A-int LTR ERV1 246 390 -4827 2391 76 0 19 chr15 1102907 1103224 -84592530 - AluY SINE Alu 0 311 1 1409 118 78 108 chr15 1103224 1103397 -84592357 + MER61A-int LTR ERV1 390 567 -4650 * 4325 88 13 8 chr15 1103377 1104001 -84591753 + MER61A-int LTR ERV1 1396 2022 -3195 * 7842 72 18 4 chr15 1103990 1105017 -84590737 + MER61A-int LTR ERV1 2948 3988 -1229 1710 227 25 19 chr15 1105017 1105502 -84590252 - L1 LINE L1 -2441 3705 3218 2762 188 69 21 chr15 1105502 1105581 -84590173 + MER4-int LTR ERV1 4962 5036 -3084 2344 87 0 7 chr15 1105581 1105880 -84589874 - AluSg SINE Alu -13 297 1 2762 188 69 21 chr15 1105880 1106427 -84589327 + MER4-int LTR ERV1 5036 5618 -2502 2559 71 0 0 chr15 1106436 1106747 -84589007 - AluY SINE Alu 0 311 1 3404 175 38 12 chr15 1106754 1107353 -84588401 + MER4-int LTR ERV1 3116 3730 -3028 256 184 0 0 chr15 1107347 1107396 -84588358 + MER4-int LTR ERV1 1114 1162 -5436 * 279 233 27 0 chr15 1107397 1107470 -84588284 + (TA)n Simple_repeat Simple_repeat 1 75 0 4535 157 104 68 chr15 1107475 1108455 -84587299 + MER4-int LTR ERV1 6631 7645 -475 235 143 0 71 chr15 1108455 1108497 -84587257 + LOR1b LTR ERV1 395 433 -28 1135 277 58 27 chr15 1108498 1108674 -84587080 - HERVL-B1 LTR ERVL -5185 469 300 1859 149 5 115 chr15 1108674 1109064 -84586690 - MER7A DNA MER2_type -1 345 1 1135 277 58 27 chr15 1109064 1109338 -84586416 - HERVL-B1 LTR ERVL -5354 300 5 231 118 0 0 chr15 1109338 1109372 -84586382 - MLT2B1 LTR ERVL -6 514 481 571 66 0 22 chr15 1109372 1109463 -84586291 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 967 252 110 3 chr15 1109465 1109782 -84585972 - MLT2B1 LTR ERVL -169 351 1 307 245 24 0 chr15 1109785 1109913 -84585841 - L1ME LINE L1 -688 5474 5341 377 274 111 8 chr15 1109928 1110162 -84585592 - L1ME LINE L1 -846 5300 5043 1578 235 70 56 chr15 1110415 1110754 -84585000 + L1MEc LINE L1 2172 2505 -3710 2938 32 3 12 chr15 1110754 1111093 -84584661 - L1PA4 LINE L1 0 6155 5820 1578 235 70 56 chr15 1111093 1111512 -84584242 + L1MEc LINE L1 2505 2894 -3321 518 206 20 0 chr15 1111665 1111767 -84583987 - AluSp SINE Alu -78 235 132 1703 172 17 7 chr15 1111771 1112068 -84583686 + LTR15 LTR ERV1 188 487 -6 775 184 18 79 chr15 1112134 1112253 -84583501 + AluJb SINE Alu 2 102 -210 1563 165 0 29 chr15 1112253 1112562 -84583192 - AluSp SINE Alu -13 300 1 775 184 18 79 chr15 1112562 1112670 -84583084 + AluJb SINE Alu 102 215 -97 260 88 0 0 chr15 1112673 1112707 -84583047 + AluJb SINE Alu 84 117 -185 697 150 0 25 chr15 1112726 1112846 -84582908 - AluSp SINE Alu -194 119 3 595 162 45 0 chr15 1112877 1112988 -84582766 + AluJb SINE Alu 2 117 -195 22 0 0 0 chr15 1113093 1113115 -84582639 + AT_rich Low_complexity Low_complexity 1 22 0 1834 104 8 0 chr15 1113115 1113375 -84582379 + AluSq SINE Alu 36 297 -16 1633 240 112 14 chr15 1114510 1115026 -84580728 + L1ME3 LINE L1 5489 6055 -107 800 187 58 0 chr15 1115026 1115181 -84580573 + AluJo SINE Alu 1 164 -148 1763 133 0 73 chr15 1115403 1115733 -84580021 + AluSg SINE Alu 1 306 -4 330 322 17 8 chr15 1116795 1116913 -84578841 + GA-rich Low_complexity Low_complexity 3 121 0 2045 81 0 37 chr15 1117363 1117661 -84578093 - AluY SINE Alu -24 287 1 287 307 0 11 chr15 1117823 1117911 -84577843 + CT-rich Low_complexity Low_complexity 4 90 0 2292 155 52 2 chr15 1118148 1118554 -84577200 + MSTB LTR MaLR 1 426 0 489 100 0 67 chr15 1119212 1119302 -84576452 - L1PA8 LINE L1 -6 6166 6083 1660 229 9 6 chr15 1119463 1119812 -84575942 - MLT1A1 LTR MaLR -15 350 1 22 0 0 0 chr15 1120128 1120150 -84575604 + AT_rich Low_complexity Low_complexity 1 22 0 2501 43 0 3 chr15 1120223 1120525 -84575229 - AluY SINE Alu -10 301 1 293 85 6 0 chr15 1121082 1121131 -84574623 - MLT2C1 LTR ERVL -4 410 349 24 0 0 0 chr15 1121447 1121471 -84574283 + AT_rich Low_complexity Low_complexity 1 24 0 780 252 25 3 chr15 1121665 1121900 -84573854 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 1121900 1122032 -84573722 + GA-rich Low_complexity Low_complexity 4 139 0 599 184 94 80 chr15 1122088 1122200 -84573554 + L1MC4 LINE L1 7593 7711 -331 2180 65 0 45 chr15 1122200 1122509 -84573245 - AluY SINE Alu -16 295 1 599 184 94 80 chr15 1122509 1122597 -84573157 + L1MC4 LINE L1 7711 7796 -246 208 143 0 0 chr15 1122645 1122680 -84573074 + (TA)n Simple_repeat Simple_repeat 1 35 0 944 190 22 66 chr15 1122715 1122941 -84572813 - MER20 DNA MER1_type 0 219 4 753 316 35 11 chr15 1122982 1123358 -84572396 + L1MEc LINE L1 1601 1985 -4411 1448 192 66 10 chr15 1123376 1123678 -84572076 - L1MC1 LINE L1 0 6333 6015 735 302 7 7 chr15 1124019 1124307 -84571447 + L1MEc LINE L1 2209 2496 -3719 1253 260 51 8 chr15 1124410 1124917 -84570837 + L1MEc LINE L1 2506 3034 -3181 * 2974 116 57 116 chr15 1124897 1125026 -84570728 + L1MA5A LINE L1 5658 5793 -504 1694 128 79 0 chr15 1125026 1125292 -84570462 + AluSx SINE Alu 1 287 -25 2974 116 57 116 chr15 1125292 1125842 -84569912 + L1MA5A LINE L1 5793 6297 0 782 285 253 5 chr15 1125844 1126279 -84569475 + L1MEc LINE L1 3000 3542 -2673 317 200 14 0 chr15 1126279 1126349 -84569405 - L1 LINE L1 -2743 3403 3333 716 209 11 6 chr15 1126355 1126532 -84569222 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 1129940 1129962 -84565792 + GC_rich Low_complexity Low_complexity 1 22 0 1716 213 30 26 chr15 1130318 1130750 -84565004 + L1 LINE L1 3062 3498 -2648 2124 71 0 45 chr15 1130750 1131060 -84564694 + AluY SINE Alu 1 296 -15 1716 213 30 26 chr15 1131060 1131135 -84564619 + L1 LINE L1 3498 3571 -2575 822 151 27 27 chr15 1131150 1131296 -84564458 - AluJo SINE Alu -115 197 52 1954 127 3 0 chr15 1131397 1131689 -84564065 - AluSx SINE Alu -19 293 1 2036 132 0 0 chr15 1132063 1132373 -84563381 - AluSg SINE Alu 0 310 1 2185 258 96 10 chr15 1132378 1133158 -84562596 - L1ME1 LINE L1 0 6166 5320 2048 172 120 2 chr15 1133231 1133656 -84562098 - LTR53 LTR ERVL -40 479 5 604 209 16 44 chr15 1133701 1133883 -84561871 - L1MDa LINE L1 -4821 1719 1543 413 212 117 51 chr15 1133887 1134024 -84561730 + MER21B LTR ERV1 661 806 -57 2050 129 3 3 chr15 1134594 1134905 -84560849 - AluY SINE Alu 0 311 1 860 276 126 39 chr15 1137446 1137740 -84558014 - L1ME2 LINE L1 -112 6052 5785 1699 163 13 3 chr15 1137740 1138047 -84557707 - AluJo SINE Alu 0 312 3 860 276 126 39 chr15 1138047 1138259 -84557495 - L1ME2 LINE L1 -379 5785 5502 2027 139 3 0 chr15 1138794 1139103 -84556651 - AluSp SINE Alu -3 310 1 2132 124 0 0 chr15 1139126 1139433 -84556321 - AluSx SINE Alu -5 307 1 254 115 0 138 chr15 1140195 1140282 -84555472 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 1140943 1141057 -84554697 + Charlie5 DNA MER1_type 1 116 -2496 * 1117 232 3 10 chr15 1141052 1141362 -84554392 + Charlie5 DNA MER1_type 2222 2529 -83 1836 121 3 70 chr15 1141362 1141677 -84554077 - AluSx SINE Alu -18 294 1 189 0 0 0 chr15 1141721 1141742 -84554012 + (T)n Simple_repeat Simple_repeat 1 21 0 1909 141 0 3 chr15 1141785 1142068 -84553686 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 1142753 1142783 -84552971 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 1143275 1143326 -84552428 - Alu SINE Alu -249 52 2 2082 125 3 0 chr15 1143546 1143850 -84551904 - AluSx SINE Alu -7 305 1 275 239 119 15 chr15 1145371 1145505 -84550249 + MIR SINE MIR 21 168 -94 391 287 167 7 chr15 1145536 1145686 -84550068 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 1146531 1146656 -84549098 + MIR3 SINE MIR 42 174 -34 235 361 28 21 chr15 1147871 1148015 -84547739 + L2 LINE L2 2250 2394 -920 324 309 59 59 chr15 1148863 1149067 -84546687 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 1150214 1150390 -84545364 + L1ME2 LINE L1 5982 6163 -1 1663 146 49 14 chr15 1150410 1150698 -84545056 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 1151326 1151590 -84544164 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 1151603 1151630 -84544124 + AT_rich Low_complexity Low_complexity 1 27 0 3684 161 19 9 chr15 1152507 1152770 -84542984 + L1PB4 LINE L1 5502 5761 -395 396 0 0 0 chr15 1152770 1152814 -84542940 + (TA)n Simple_repeat Simple_repeat 2 45 0 3684 161 19 9 chr15 1152814 1153197 -84542557 + L1PB4 LINE L1 5761 6154 -2 1263 231 77 12 chr15 1153202 1153631 -84542123 + L1ME1 LINE L1 4362 4818 -1328 746 223 58 22 chr15 1153644 1153918 -84541836 + L1ME1 LINE L1 4995 5278 -868 804 168 6 56 chr15 1153945 1154106 -84541648 + FRAM SINE Alu 12 164 -12 1353 279 164 14 chr15 1154125 1154834 -84540920 + L1ME1 LINE L1 5345 6159 -7 703 332 56 23 chr15 1154865 1155296 -84540458 + L1M3c LINE L1 1 445 -5696 1529 256 50 30 chr15 1155492 1155652 -84540102 - LTR49-int LTR ERV1 -2401 2722 2567 2549 33 0 0 chr15 1155652 1155953 -84539801 - AluY SINE Alu -10 301 1 1529 256 50 30 chr15 1155953 1156316 -84539438 - LTR49-int LTR ERV1 -2556 2567 2189 2388 220 51 65 chr15 1156324 1157160 -84538594 - LTR49-int LTR ERV1 -1992 3297 2344 1910 104 0 0 chr15 1157160 1157420 -84538334 + AluSx SINE Alu 44 303 -9 2388 220 51 65 chr15 1157420 1157505 -84538249 - LTR49-int LTR ERV1 -2945 2344 2259 983 238 95 53 chr15 1157506 1158044 -84537710 - LTR49-int LTR ERV1 -3571 2375 1861 2052 62 7 56 chr15 1158044 1158380 -84537374 - AluY SINE Alu 0 311 1 983 238 95 53 chr15 1158380 1158533 -84537221 - LTR49-int LTR ERV1 -4085 1861 998 738 148 0 8 chr15 1158701 1158829 -84536925 - AluSp SINE Alu -180 133 7 332 167 15 0 chr15 1158860 1158926 -84536828 + AluJb SINE Alu 51 117 -185 1441 163 19 47 chr15 1158927 1159246 -84536508 - AluSp SINE Alu -3 310 1 844 85 15 0 chr15 1159252 1159382 -84536372 - AluSp SINE Alu -180 133 2 542 197 8 8 chr15 1159411 1159528 -84536226 + FLAM_C SINE Alu 1 117 -16 1645 138 10 39 chr15 1159541 1159846 -84535908 - AluSp SINE Alu -17 296 1 1275 175 12 86 chr15 1159873 1159984 -84535770 + AluJb SINE Alu 1 119 -183 1359 166 42 0 chr15 1159984 1160147 -84535607 - AluSp SINE Alu -17 296 114 324 0 0 0 chr15 1160147 1160183 -84535571 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1359 166 42 0 chr15 1160183 1160303 -84535451 - AluSp SINE Alu -199 114 1 1275 175 12 86 chr15 1160303 1160517 -84535237 + AluJb SINE Alu 119 302 0 185 250 143 0 chr15 1160782 1160838 -84534916 - MIR SINE MIR -93 169 106 277 216 76 124 chr15 1161103 1161373 -84534381 + L1MC5 LINE L1 7563 7845 -116 2061 110 0 0 chr15 1161373 1161655 -84534099 + AluSq SINE Alu 1 282 -31 203 79 26 0 chr15 1161659 1161697 -84534057 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 277 216 76 124 chr15 1161697 1161791 -84533963 + L1MC5 LINE L1 7848 7914 -47 1609 121 9 0 chr15 1361902 1362133 -84333621 + AluSg/x SINE Alu 66 298 -12 234 0 0 0 chr15 1362302 1362328 -84333426 + (A)n Simple_repeat Simple_repeat 1 26 0 22 43 0 21 chr15 1362587 1362608 -84333146 + AT_rich Low_complexity Low_complexity 1 21 -25 1657 157 51 0 chr15 1362608 1362882 -84332872 - AluJb SINE Alu -24 288 1 22 43 0 21 chr15 1362882 1362907 -84332847 + AT_rich Low_complexity Low_complexity 21 46 0 948 162 7 0 chr15 1362915 1363069 -84332685 - AluJo SINE Alu -74 238 84 1668 135 0 0 chr15 1363473 1363725 -84332029 + AluSq SINE Alu 58 309 -4 1942 93 21 11 chr15 1363861 1364178 -84331576 + AluSq SINE Alu 1 320 0 2412 53 0 3 chr15 1364402 1364702 -84331052 - AluY SINE Alu -12 299 1 2434 66 0 0 chr15 1365110 1365412 -84330342 - AluY SINE Alu -9 302 1 904 155 0 26 chr15 1365421 1365576 -84330178 - FRAM SINE Alu -23 153 3 1670 169 3 13 chr15 1365688 1365996 -84329758 - AluJo SINE Alu -7 305 1 2053 102 40 7 chr15 1366010 1366313 -84329441 - AluSq SINE Alu 0 313 1 2093 118 0 3 chr15 1366617 1366913 -84328841 - AluSg SINE Alu -15 295 1 1680 177 0 10 chr15 1366913 1367212 -84328542 - AluJb SINE Alu -14 298 3 307 73 24 0 chr15 1367258 1367299 -84328455 + 5S rRNA rRNA 1 42 -79 713 205 8 0 chr15 1367358 1367480 -84328274 + FLAM_A SINE Alu 1 123 -10 196 293 17 0 chr15 1368226 1368284 -84327470 + MIR3 SINE MIR 15 73 -135 2013 140 0 0 chr15 1368310 1368610 -84327144 - AluSx SINE Alu -12 300 1 993 80 0 15 chr15 1368610 1368747 -84327007 - AluSq/x SINE Alu -177 135 1 1155 145 199 12 chr15 1369153 1369394 -84326360 - AluSg1 SINE Alu -23 286 1 1945 155 0 0 chr15 1369400 1369697 -84326057 - AluSq SINE Alu -12 301 5 513 177 0 0 chr15 1369789 1369868 -84325886 + AluJ/FLAM SINE Alu 13 91 -221 1152 165 5 9 chr15 1370053 1370265 -84325489 - AluJb SINE Alu -10 302 92 1210 113 62 5 chr15 1370403 1370598 -84325156 + AluSg/x SINE Alu 90 295 -15 2497 166 110 25 chr15 1371070 1371589 -84324165 + LTR6A LTR ERV1 2 564 0 1344 224 0 10 chr15 1371609 1371922 -84323832 - AluJo SINE Alu -2 310 1 702 236 208 48 chr15 1371973 1372213 -84323541 - L2 LINE L2 -5 3308 3108 2127 108 10 0 chr15 1372213 1372510 -84323244 - AluSx SINE Alu -12 300 1 702 236 208 48 chr15 1372510 1372791 -84322963 - L2 LINE L2 -205 3108 2709 492 194 19 0 chr15 1372837 1372940 -84322814 + MIR SINE MIR 93 197 -65 327 236 146 0 chr15 1372966 1373076 -84322678 - L2 LINE L2 -721 2593 2468 752 151 0 0 chr15 1373080 1373199 -84322555 + FLAM_C SINE Alu 6 124 -19 1520 178 16 16 chr15 1373214 1373523 -84322231 + AluJo SINE Alu 1 309 -3 186 250 0 0 chr15 1373555 1373611 -84322143 + GA-rich Low_complexity Low_complexity 1 56 0 710 120 4 58 chr15 1373635 1373902 -84321852 + (GGGGA)n Simple_repeat Simple_repeat 1 252 0 530 243 91 100 chr15 1374047 1374274 -84321480 + L1M4 LINE L1 4156 4381 -1765 1869 154 0 13 chr15 1374274 1374586 -84321168 + AluSx SINE Alu 1 308 -4 530 243 91 100 chr15 1374586 1374687 -84321067 + L1M4 LINE L1 4381 4481 -1665 836 191 25 0 chr15 1374720 1374882 -84320872 - AluJb SINE Alu -10 302 137 2091 128 0 0 chr15 1374909 1375221 -84320533 + AluSx SINE Alu 1 312 0 2069 117 17 0 chr15 1375609 1375899 -84319855 + AluSq SINE Alu 1 295 -18 756 158 0 43 chr15 1376081 1376220 -84319534 + FLAM_C SINE Alu 1 133 0 1864 122 0 78 chr15 1376245 1376374 -84319380 + AluSx SINE Alu 7 144 -168 2018 109 3 0 chr15 1376374 1376658 -84319096 + AluSg1 SINE Alu 1 285 -24 1864 122 0 78 chr15 1376658 1376849 -84318905 + AluSx SINE Alu 144 302 -10 687 171 0 17 chr15 1376858 1376975 -84318779 - FLAM_C SINE Alu -16 117 3 2049 97 47 3 chr15 1377271 1377571 -84318183 + AluSq SINE Alu 1 313 0 1674 167 3 37 chr15 1377672 1377807 -84317947 + AluJb SINE Alu 1 139 -173 2272 90 3 0 chr15 1377807 1378108 -84317646 + AluSp SINE Alu 1 302 -11 1674 167 3 37 chr15 1378108 1378295 -84317459 + AluJb SINE Alu 139 312 0 1014 129 29 12 chr15 1378825 1378996 -84316758 - AluSq SINE Alu -6 307 134 1867 133 0 23 chr15 1378996 1379297 -84316457 - AluSx SINE Alu -18 294 1 337 113 0 0 chr15 1379297 1379350 -84316404 + MADE1 DNA Mariner 28 80 0 1083 128 0 0 chr15 1379852 1380008 -84315746 - FRAM SINE Alu -10 166 11 1663 146 26 42 chr15 1380432 1380740 -84315014 - AluSx SINE Alu -9 303 1 2110 119 3 3 chr15 1381700 1382012 -84313742 + AluSx SINE Alu 1 312 0 2416 68 7 0 chr15 1382060 1382369 -84313385 + AluY SINE Alu 1 311 0 2106 96 0 10 chr15 1382709 1383021 -84312733 + AluSg SINE Alu 1 310 0 1244 97 0 0 chr15 1383562 1383727 -84312027 - AluSc SINE Alu -13 296 132 2198 98 0 3 chr15 1383727 1384032 -84311722 - AluY SINE Alu -7 304 1 253 341 30 15 chr15 1385355 1385487 -84310267 - MIR SINE MIR -126 136 3 294 339 105 0 chr15 1386275 1386399 -84309355 + MIR SINE MIR 48 184 -78 319 244 25 59 chr15 1386714 1386833 -84308921 + MLT2C1 LTR ERVL 2 116 -281 245 323 30 0 chr15 1386850 1386949 -84308805 + MLT2C1 LTR ERVL 237 338 -59 341 182 0 0 chr15 1386961 1387027 -84308727 + MER72 LTR ERV1 1 66 -656 2414 230 68 12 chr15 1387450 1388036 -84307718 + MER82 DNA MER2_type 34 652 -1 1268 211 187 44 chr15 1388163 1388618 -84307136 - MLT2B1 LTR ERVL 0 520 1 345 314 71 59 chr15 1388887 1389142 -84306612 - MIR SINE MIR -3 259 2 185 387 28 35 chr15 1389885 1390027 -84305727 + L2 LINE L2 2746 2886 -428 1934 128 3 10 chr15 1390386 1390684 -84305070 - AluSx SINE Alu -12 300 5 378 0 0 0 chr15 1390991 1391033 -84304721 + (TG)n Simple_repeat Simple_repeat 1 42 0 270 193 59 30 chr15 1391069 1391204 -84304550 + (TG)n Simple_repeat Simple_repeat 1 139 0 207 0 0 0 chr15 1391218 1391241 -84304513 + (TG)n Simple_repeat Simple_repeat 1 23 0 229 85 0 43 chr15 1391241 1391288 -84304466 + (GA)n Simple_repeat Simple_repeat 2 46 0 525 281 0 16 chr15 1391871 1391999 -84303755 - L2 LINE L2 0 3313 3188 7313 44 3 0 chr15 1393612 1394763 -84300991 + L1PA3 LINE L1 4984 6137 -18 4411 224 57 46 chr15 1394865 1396291 -84299463 - L1MDa LINE L1 -2364 4176 2767 1995 110 28 7 chr15 1396291 1396582 -84299172 - AluSq SINE Alu -16 297 1 4411 224 57 46 chr15 1396582 1397015 -84298739 - L1MDa LINE L1 -3773 2767 2340 1617 161 83 9 chr15 1397015 1397351 -84298403 + MER46B DNA MER2_type 1 236 0 4411 224 57 46 chr15 1397351 1398160 -84297594 - L1MDa LINE L1 -4200 2340 1483 192 40 0 0 chr15 1398160 1398185 -84297569 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 390 134 0 0 chr15 1398207 1398274 -84297480 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1729 149 4 0 chr15 1398276 1398551 -84297203 - AluSg SINE Alu -34 276 1 315 217 86 57 chr15 1400043 1400218 -84295536 - L1MC4a LINE L1 -1926 5882 5703 2245 94 0 3 chr15 1400220 1400529 -84295225 + AluSq SINE Alu 1 308 -5 936 61 0 0 chr15 1400898 1401012 -84294742 - AluY SINE Alu -197 114 1 530 295 70 44 chr15 1401015 1401469 -84294285 - L1MC5 LINE L1 -179 7782 7317 362 214 32 97 chr15 1401637 1401791 -84293963 - L1MC5 LINE L1 -861 7100 6957 514 231 35 35 chr15 1401845 1402048 -84293706 - L1M4 LINE L1 -3097 3049 2847 350 267 22 0 chr15 1402116 1402206 -84293548 - L1M4 LINE L1 -3327 2819 2728 1836 164 0 0 chr15 1404311 1404598 -84291156 + AluJb SINE Alu 1 287 -25 2167 96 7 0 chr15 1404607 1404899 -84290855 + AluSq SINE Alu 1 294 -19 244 367 61 0 chr15 1405335 1405433 -84290321 - L2 LINE L2 -1 3271 3168 2257 85 3 0 chr15 1408700 1408994 -84286760 - AluSc SINE Alu -14 295 1 2055 227 70 39 chr15 1409457 1410044 -84285710 - MER77 LTR ERV1 0 605 1 1032 254 53 22 chr15 1410198 1410521 -84285233 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 1410691 1410713 -84285041 + AT_rich Low_complexity Low_complexity 1 22 0 3787 193 62 59 chr15 1413143 1413959 -84281795 - L1MB5 LINE L1 0 6174 5361 2262 103 0 0 chr15 1413959 1414270 -84281484 - AluSx SINE Alu -1 311 1 3787 193 62 59 chr15 1414270 1415163 -84280591 - L1MB5 LINE L1 -813 5361 4457 1519 206 69 43 chr15 1415168 1415309 -84280445 - L1MB5 LINE L1 -2486 3660 3524 2327 70 0 0 chr15 1415309 1415609 -84280145 - AluY SINE Alu -11 300 1 1519 206 69 43 chr15 1415609 1415852 -84279902 - L1MB5 LINE L1 -2622 3524 3256 2147 99 0 13 chr15 1415852 1416155 -84279599 - AluSc SINE Alu 0 309 11 1519 206 69 43 chr15 1416155 1416304 -84279450 - L1MB5 LINE L1 -2890 3256 3112 926 199 0 5 chr15 1416309 1416505 -84279249 - AluJb SINE Alu 0 312 118 1398 223 58 17 chr15 1416505 1416968 -84278786 - L1MB5 LINE L1 -3052 3094 2613 1514 151 0 44 chr15 1417101 1417372 -84278382 + AluJb SINE Alu 23 281 -31 213 139 0 0 chr15 1417387 1417430 -84278324 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 219 181 56 0 chr15 1417430 1417502 -84278252 + (TA)n Simple_repeat Simple_repeat 2 77 0 1907 266 47 46 chr15 1417508 1418477 -84277277 - HERVL68 LTR ERVL -1920 1117 60 2332 176 109 0 chr15 1418485 1418990 -84276764 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 1418992 1419132 -84276622 - L1ME LINE L1 -339 5782 5631 1508 172 80 43 chr15 1422171 1422583 -84273171 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 1422584 1422973 -84272781 - MLT1C LTR MaLR -46 421 3 343 315 6 0 chr15 1423800 1423965 -84271789 + (TG)n Simple_repeat Simple_repeat 1 166 0 790 142 0 0 chr15 1424442 1424562 -84271192 + FLAM_A SINE Alu 20 139 -3 2116 108 0 13 chr15 1425387 1425694 -84270060 + AluSg SINE Alu 1 303 -7 2140 86 7 13 chr15 1427332 1427636 -84268118 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 1427659 1427765 -84267989 - L1ME4a LINE L1 0 6121 5995 338 248 10 0 chr15 1429802 1429901 -84265853 + MER5A DNA MER1_type 10 98 -80 2282 87 0 0 chr15 1430135 1430435 -84265319 + AluY SINE Alu 3 302 -9 856 135 0 81 chr15 1430435 1430620 -84265134 + AluSg/x SINE Alu 132 301 -9 979 197 170 3 chr15 1430764 1430916 -84264838 + MER2 DNA MER2_type 2 127 -217 2433 77 0 0 chr15 1430916 1431227 -84264527 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 1431227 1431368 -84264386 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 1431470 1431579 -84264175 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 1432623 1432797 -84262957 + MER58A DNA MER1_type 44 224 0 450 227 100 0 chr15 1433131 1433241 -84262513 + MLT1D LTR MaLR 385 505 0 224 281 101 0 chr15 1434352 1434441 -84261313 - L2 LINE L2 -215 3057 2960 390 242 68 43 chr15 1434982 1435143 -84260611 + MIR3 SINE MIR 3 167 -41 2043 130 0 3 chr15 1435921 1436229 -84259525 + AluSq SINE Alu 1 307 -6 884 257 15 20 chr15 1437154 1437480 -84258274 - MER34C LTR ERV1 -155 430 63 6373 34 4 0 chr15 1438218 1438956 -84256798 + L1PA5 LINE L1 5408 6148 -6 263 305 21 0 chr15 1439726 1439821 -84255933 - L2 LINE L2 -1 3312 3216 1745 161 10 26 chr15 1441848 1442159 -84253595 - AluSp SINE Alu -7 306 1 1968 140 0 0 chr15 1442531 1442824 -84252930 + AluSx SINE Alu 1 293 -19 217 314 0 0 chr15 1442994 1443064 -84252690 - MIR SINE MIR -8 254 185 3425 175 5 14 chr15 1443375 1444039 -84251715 - L1MA5 LINE L1 -1 6299 5642 1728 201 214 28 chr15 1444041 1444643 -84251111 + L1 LINE L1 3884 4597 -1549 28 29 0 0 chr15 1445281 1445316 -84250438 + AT_rich Low_complexity Low_complexity 1 35 0 200 158 105 0 chr15 1445369 1445445 -84250309 + (CATTT)n Simple_repeat Simple_repeat 5 88 0 561 123 81 6 chr15 1445466 1445781 -84249973 + (CATTT)n Simple_repeat Simple_repeat 1 338 0 43125 37 24 1 chr15 1445793 1451811 -84243943 - L1PA2 LINE L1 0 6155 3 313 177 42 0 chr15 1451812 1451908 -84243846 + (CATCT)n Simple_repeat Simple_repeat 2 101 0 337 289 85 73 chr15 1451916 1453288 -84242466 - L1MEd LINE L1 -4902 1217 795 578 119 89 8 chr15 1453288 1453524 -84242230 + (CATTT)n Simple_repeat Simple_repeat 1 255 0 301 131 66 0 chr15 1453528 1453589 -84242165 + (CATCT)n Simple_repeat Simple_repeat 5 69 0 350 287 111 64 chr15 1453593 1454263 -84241491 - L1MEd LINE L1 -4892 1227 798 218 87 43 72 chr15 1454324 1454393 -84241361 + (CATCT)n Simple_repeat Simple_repeat 1 67 0 36 33 0 16 chr15 1454517 1454541 -84241213 + AT_rich Low_complexity Low_complexity 1 24 -36 703 189 23 30 chr15 1454541 1454555 -84241199 - FLAM_C SINE Alu -171 131 118 1420 189 50 13 chr15 1454555 1454856 -84240898 - AluJo SINE Alu 0 312 1 198 0 0 0 chr15 1454856 1454878 -84240876 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 703 189 23 30 chr15 1454878 1454994 -84240760 - FLAM_C SINE Alu -182 120 1 36 33 0 16 chr15 1454994 1455030 -84240724 + AT_rich Low_complexity Low_complexity 24 60 0 273 324 47 0 chr15 1455420 1455568 -84240186 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 261 141 0 78 chr15 1455568 1455759 -84239995 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 219 177 0 99 chr15 1455877 1456164 -84239590 + (CAGGG)n Simple_repeat Simple_repeat 1 258 0 340 171 0 55 chr15 1456191 1456355 -84239399 + (CAGGG)n Simple_repeat Simple_repeat 2 156 0 361 178 2 76 chr15 1456488 1457067 -84238687 + (CAGGG)n Simple_repeat Simple_repeat 1 535 0 205 141 0 90 chr15 1457074 1457152 -84238602 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 788 126 0 17 chr15 1457206 1457325 -84238429 - AluJb SINE Alu -179 133 17 392 223 32 11 chr15 1457327 1457421 -84238333 + MIR SINE MIR 92 187 -75 335 293 48 0 chr15 1457630 1457777 -84237977 + (CCCTAG)n Simple_repeat Simple_repeat 6 159 0 284 265 61 7 chr15 1457989 1458136 -84237618 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 203 174 0 47 chr15 1458140 1458226 -84237528 + (CAGGG)n Simple_repeat Simple_repeat 5 86 0 444 275 47 0 chr15 1458237 1458408 -84237346 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 296 277 54 14 chr15 1458421 1458569 -84237185 + (CTAGGG)n Simple_repeat Simple_repeat 1 154 0 239 321 45 0 chr15 1458589 1458723 -84237031 + (CTAGGG)n Simple_repeat Simple_repeat 1 140 0 431 250 34 23 chr15 1458785 1458961 -84236793 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 244 152 0 79 chr15 1458962 1459126 -84236628 + (CAGGG)n Simple_repeat Simple_repeat 1 151 0 307 302 28 28 chr15 1459142 1459321 -84236433 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 189 143 7 79 chr15 1459370 1459510 -84236244 + (CAGGG)n Simple_repeat Simple_repeat 2 131 0 473 259 46 9 chr15 1459613 1459951 -84235803 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 203 130 0 22 chr15 1459969 1460015 -84235739 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 213 156 0 74 chr15 1460098 1460233 -84235521 + (CAGGG)n Simple_repeat Simple_repeat 1 125 0 415 260 48 0 chr15 1460289 1460435 -84235319 + (CTAGGG)n Simple_repeat Simple_repeat 2 154 0 359 286 48 0 chr15 1460554 1460722 -84235032 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 209 238 16 76 chr15 1460673 1460858 -84234896 + (CAAGG)n Simple_repeat Simple_repeat 2 175 0 * 336 198 6 72 chr15 1460806 1460973 -84234781 + (CAGGG)n Simple_repeat Simple_repeat 1 156 0 236 183 0 59 chr15 1461052 1461221 -84234533 + (CAGGG)n Simple_repeat Simple_repeat 2 160 0 815 276 109 35 chr15 1462045 1462397 -84233357 - HSREP522 Satellite telomeric -171 377 1 4123 214 61 37 chr15 1462528 1463750 -84232004 + L1 LINE L1 2785 4035 -2111 625 96 0 0 chr15 1463754 1463837 -84231917 + AluJb SINE Alu 208 290 -22 943 152 0 24 chr15 1463868 1464032 -84231722 + AluJo SINE Alu 6 165 -147 2608 187 36 13 chr15 1464032 1464584 -84231170 + L1MB7 LINE L1 5599 6163 -21 22 35 0 0 chr15 1464770 1464799 -84230955 + AT_rich Low_complexity Low_complexity 1 29 0 647 197 0 47 chr15 1464799 1464926 -84230828 + FLAM_A SINE Alu 1 121 -12 2084 131 0 3 chr15 1464935 1465241 -84230513 + AluSx SINE Alu 1 305 -7 350 186 17 0 chr15 1465241 1465300 -84230454 - L1MC4 LINE L1 -1340 6702 6643 1495 160 45 17 chr15 1465447 1465734 -84230020 + AluSx SINE Alu 1 295 -17 2049 136 0 3 chr15 1465737 1466046 -84229708 + AluSx SINE Alu 1 308 -4 1266 171 35 52 chr15 1466315 1466602 -84229152 - AluJo SINE Alu -30 282 1 343 342 8 17 chr15 1466794 1466911 -84228843 - L2 LINE L2 0 3272 3157 186 118 0 0 chr15 1467468 1467502 -84228252 + (CA)n Simple_repeat Simple_repeat 2 35 0 2242 61 14 0 chr15 1468389 1468682 -84227072 - AluY SINE Alu -14 297 1 226 368 18 36 chr15 1468790 1468956 -84226798 + MIR SINE MIR 12 174 -88 2596 127 90 19 chr15 1468988 1469475 -84226279 - Tigger3(Golem) DNA MER2_type -3 3026 2505 2096 121 0 9 chr15 1469475 1469790 -84225964 + AluSq SINE Alu 2 313 0 528 321 24 6 chr15 1470149 1470317 -84225437 + MIR SINE MIR 13 183 -79 638 272 75 55 chr15 1470439 1470693 -84225061 + MER46C DNA MER2_type 80 338 0 1959 139 0 3 chr15 1470981 1471282 -84224472 + AluSx SINE Alu 1 300 -12 1845 163 0 0 chr15 1471966 1472261 -84223493 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr15 1472307 1472328 -84223426 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1419 165 32 36 chr15 1473767 1473904 -84221850 + AluJo SINE Alu 1 137 -175 2071 130 3 0 chr15 1473904 1474205 -84221549 + AluSx SINE Alu 1 302 -10 1419 165 32 36 chr15 1474205 1474346 -84221408 + AluJo SINE Alu 137 278 -34 367 180 33 16 chr15 1474346 1474468 -84221286 + GA-rich Low_complexity Low_complexity 4 127 0 477 125 0 14 chr15 1474468 1474540 -84221214 + AluS SINE Alu 3 73 -239 2025 134 3 0 chr15 1474751 1475056 -84220698 + AluSq SINE Alu 1 306 -7 803 243 6 0 chr15 1475090 1475271 -84220483 + AluJo SINE Alu 122 303 -9 209 333 42 25 chr15 1475306 1475426 -84220328 - MIR SINE MIR -57 151 30 1891 166 55 19 chr15 1476270 1476632 -84219122 + THE1C LTR MaLR 1 375 0 1432 134 0 0 chr15 1477205 1477422 -84218332 + AluSg/x SINE Alu 85 301 -9 514 254 90 9 chr15 1478357 1478529 -84217225 - MIR SINE MIR -56 206 22 1717 142 4 4 chr15 1478914 1479188 -84216566 + AluJb SINE Alu 1 274 -38 433 255 172 14 chr15 1479740 1479885 -84215869 - MER5B DNA MER1_type -7 171 4 213 39 0 0 chr15 1479908 1479934 -84215820 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1658 142 3 20 chr15 1479943 1480238 -84215516 - TAR1 Satellite telomeric -297 1814 1525 467 306 138 56 chr15 1480621 1481287 -84214467 - L1MEd LINE L1 -5353 766 46 339 181 86 9 chr15 1481800 1481905 -84213849 + MIR3 SINE MIR 81 193 -15 1160 201 108 0 chr15 1482691 1482940 -84212814 + MER68 LTR ERV1 287 562 0 2937 231 84 58 chr15 1482942 1483073 -84212681 - L1 LINE L1 -1208 5959 5833 2080 92 0 74 chr15 1483073 1483399 -84212355 - AluY SINE Alu -9 302 1 2937 231 84 58 chr15 1483399 1483481 -84212273 - L1 LINE L1 -1334 5833 5755 1967 147 0 3 chr15 1483481 1483793 -84211961 - AluSq SINE Alu -2 311 1 2937 231 84 58 chr15 1483793 1484200 -84211554 - L1 LINE L1 -1412 5755 5360 1770 166 3 3 chr15 1484200 1484502 -84211252 + AluJb SINE Alu 1 302 -10 2937 231 84 58 chr15 1484502 1485044 -84210710 - L1 LINE L1 -1807 5360 4765 810 170 107 13 chr15 1485097 1485120 -84210634 - FRAM SINE Alu -141 171 152 255 31 0 0 chr15 1485120 1485152 -84210602 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr15 1485151 1485180 -84210574 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 * 810 170 107 13 chr15 1485152 1485315 -84210439 - FRAM SINE Alu -160 152 1 27 49 0 0 chr15 1485330 1485371 -84210383 + AT_rich Low_complexity Low_complexity 1 41 0 1990 119 36 10 chr15 1485400 1485702 -84210052 - AluSx SINE Alu -2 310 1 1921 133 23 0 chr15 1486462 1486763 -84208991 + AluSx SINE Alu 1 308 -4 1906 123 0 14 chr15 1487257 1487542 -84208212 - AluSx SINE Alu -19 293 13 492 262 16 27 chr15 1487642 1487730 -84208024 - L1 LINE L1 -2383 4784 4697 396 0 0 0 chr15 1487730 1487774 -84207980 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 262 16 27 chr15 1487774 1487868 -84207886 - L1 LINE L1 -2470 4697 4604 2231 218 15 17 chr15 1487910 1488378 -84207376 - L1 LINE L1 -5941 1227 761 1169 206 86 86 chr15 1488440 1488872 -84206882 + MSTB1 LTR MaLR 1 432 0 1347 221 246 10 chr15 1488881 1489364 -84206390 - L1 LINE L1 -6571 597 1 649 269 187 26 chr15 1489487 1489877 -84205877 - L1ME3A LINE L1 -1 6169 5717 314 198 0 74 chr15 1490047 1490128 -84205626 - L1ME3A LINE L1 -2241 5544 5470 379 303 61 6 chr15 1490149 1490314 -84205440 - L1MEd LINE L1 -5943 176 3 1351 95 37 0 chr15 1490631 1490821 -84204933 + AluY SINE Alu 106 302 -9 2175 103 3 0 chr15 1491029 1491319 -84204435 + AluSx SINE Alu 1 291 -21 1155 193 82 4 chr15 1491535 1491805 -84203949 - L1ME3A LINE L1 -769 5377 5087 309 266 16 57 chr15 1492256 1492380 -84203374 + Charlie1 DNA MER1_type 1 119 -2642 432 195 57 24 chr15 1492490 1492613 -84203141 + Charlie1 DNA MER1_type 2523 2649 -112 275 294 84 0 chr15 1492643 1492762 -84202992 - L1MA9 LINE L1 -5 6307 6179 979 161 134 28 chr15 1493323 1493577 -84202177 + AluJo SINE Alu 1 281 -31 857 199 61 30 chr15 1493588 1493696 -84202058 - Charlie5 DNA MER1_type -119 2505 2402 2179 105 0 7 chr15 1493696 1494002 -84201752 - AluSq SINE Alu -9 304 1 857 199 61 30 chr15 1494002 1494124 -84201630 - Charlie5 DNA MER1_type -222 2402 2268 477 164 103 0 chr15 1494143 1494259 -84201495 - MER3 DNA MER1_type -41 168 41 232 278 142 57 chr15 1494262 1494731 -84201023 - L2 LINE L2 -208 3064 2554 193 312 18 46 chr15 1494802 1494911 -84200843 - L2 LINE L2 -987 2327 2222 735 107 116 16 chr15 1494991 1495112 -84200642 - FLAM_C SINE Alu 0 133 1 499 280 63 7 chr15 1495372 1495515 -84200239 + MIR SINE MIR 42 192 -70 4958 128 85 15 chr15 1495519 1495578 -84200176 - Tigger2 DNA MER2_type 0 2718 2665 2120 106 14 0 chr15 1495578 1495870 -84199884 + AluSg SINE Alu 1 296 -14 4958 128 85 15 chr15 1495870 1496656 -84199098 - Tigger2 DNA MER2_type -53 2665 1814 1587 185 58 48 chr15 1496633 1496989 -84198765 + MER49 LTR ERV1 515 866 -57 * 1879 148 0 16 chr15 1496989 1497294 -84198460 + AluSx SINE Alu 6 305 -7 1478 162 8 15 chr15 1497304 1497563 -84198191 + AluJo SINE Alu 1 257 -55 1587 185 58 48 chr15 1497563 1497590 -84198164 + MER49 LTR ERV1 874 913 -10 672 125 0 0 chr15 1497616 1497720 -84198034 - Tigger2 DNA MER2_type -1742 976 873 786 204 40 28 chr15 1497735 1497911 -84197843 - AluJb SINE Alu -1 311 134 4316 126 64 29 chr15 1497911 1498676 -84197078 - Tigger2 DNA MER2_type -1833 885 94 505 175 0 0 chr15 1498689 1498769 -84196985 - AluJ/FLAM SINE Alu -229 83 4 445 158 13 0 chr15 1498772 1498848 -84196906 - Tigger2 DNA MER2_type -1831 887 811 721 161 0 9 chr15 1498902 1499014 -84196740 + FLAM_C SINE Alu 3 113 -30 1972 125 0 29 chr15 1499019 1499330 -84196424 - AluSc SINE Alu -7 302 1 363 181 0 42 chr15 1499372 1499444 -84196310 - Tigger2 DNA MER2_type -2649 69 1 957 236 71 13 chr15 1499585 1500405 -84195349 - L1ME1 LINE L1 -142 6024 5032 2983 167 70 2 chr15 1500434 1500978 -84194776 - ERVL LTR ERVL -357 5407 4827 803 142 0 0 chr15 1500978 1501091 -84194663 - AluSq/x SINE Alu -198 114 2 8338 247 61 32 chr15 1501114 1503539 -84192215 - L1MC/D LINE L1 -743 5797 3445 1658 153 28 17 chr15 1503539 1503827 -84191927 - AluJb SINE Alu -21 291 1 8338 247 61 32 chr15 1503827 1504489 -84191265 - L1MC/D LINE L1 -3095 3445 2687 2778 13 0 0 chr15 1504489 1504800 -84190954 - AluY SINE Alu 0 311 1 8338 247 61 32 chr15 1504800 1504922 -84190832 - L1MC/D LINE L1 -3853 2687 2570 1026 256 120 50 chr15 1504997 1505512 -84190242 - MER77 LTR ERV1 -1 604 54 3114 245 94 17 chr15 1505543 1506779 -84188975 - L1MDb LINE L1 -4012 2528 1106 1491 180 3 49 chr15 1506779 1507106 -84188648 - AluJo SINE Alu 0 312 1 3114 245 94 17 chr15 1507106 1507383 -84188371 - L1MDb LINE L1 -5434 1106 852 731 276 62 23 chr15 1507554 1507811 -84187943 - L1MDb LINE L1 -6212 328 62 476 317 100 42 chr15 1508958 1509267 -84186487 + HAL1 LINE L1 1246 1572 -935 873 127 8 0 chr15 1509602 1509736 -84186018 + AluSq/x SINE Alu 1 135 -177 2035 118 0 0 chr15 1509736 1510032 -84185722 + AluSx SINE Alu 1 296 -16 700 184 45 11 chr15 1510176 1510361 -84185393 - L1M3 LINE L1 -661 5510 5288 182 216 0 0 chr15 1510440 1510477 -84185277 + L2 LINE L2 3261 3297 -16 749 260 27 14 chr15 1512589 1512816 -84182938 + LTR33 LTR ERVL 35 252 -271 348 288 15 15 chr15 1512868 1513000 -84182754 + LTR33 LTR ERVL 382 513 -8 259 247 55 0 chr15 1513543 1513616 -84182138 - MIR3 SINE MIR -5 203 127 1994 150 3 35 chr15 1514672 1514860 -84180894 + L1M3 LINE L1 5442 5616 -555 2376 108 93 18 chr15 1514860 1515258 -84180496 + MSTA LTR MaLR 1 428 0 1994 150 3 35 chr15 1515258 1515415 -84180339 + L1M3 LINE L1 5616 5776 -395 321 303 110 0 chr15 1516822 1516931 -84178823 + L2 LINE L2 3143 3263 -9 199 346 59 0 chr15 1516948 1517049 -84178705 + MIR SINE MIR 34 140 -122 258 32 0 0 chr15 1517102 1517133 -84178621 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 261 98 0 0 chr15 1517132 1517173 -84178581 + (TA)n Simple_repeat Simple_repeat 1 41 0 15172 80 10 1 chr15 1519397 1522182 -84173572 - L1PA7 LINE L1 -4 6150 3338 15743 116 13 22 chr15 1522290 1524760 -84170994 - L1PA7 LINE L1 -3076 3070 625 726 273 125 13 chr15 1525305 1525725 -84170029 + L2 LINE L2 2530 3052 -261 207 167 0 0 chr15 1525828 1525870 -84169884 + L2 LINE L2 3231 3272 0 25 0 0 0 chr15 1526144 1526169 -84169585 + AT_rich Low_complexity Low_complexity 1 25 0 1665 243 92 27 chr15 1526264 1526745 -84169009 + LTR33 LTR ERVL 4 515 -6 2281 105 7 0 chr15 1526751 1527047 -84168707 - AluSg SINE Alu -12 298 1 8541 60 6 91 chr15 1527661 1528922 -84166832 - SVA Other Other -7 1379 226 290 302 78 8 chr15 1529227 1529356 -84166398 + MIR SINE MIR 51 188 -74 1916 178 79 5 chr15 1529366 1529760 -84165994 + L1MC2 LINE L1 5917 6339 -5 30 45 0 0 chr15 1529782 1529826 -84165928 + AT_rich Low_complexity Low_complexity 1 44 0 475 294 20 7 chr15 1530779 1530932 -84164822 - MER103 DNA DNA 0 166 12 2317 112 3 0 chr15 1531016 1531319 -84164435 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr15 1531450 1531478 -84164276 + AT_rich Low_complexity Low_complexity 1 28 0 375 0 0 0 chr15 1531756 1531799 -84163955 - MADE1 DNA Mariner 0 80 38 333 23 23 0 chr15 1532603 1532646 -84163108 + MADE1 DNA Mariner 37 80 0 380 313 37 82 chr15 1532739 1532931 -84162823 + MIR SINE MIR 6 184 -78 1590 167 36 4 chr15 1532931 1533054 -84162700 + AluJb SINE Alu 1 119 -193 360 0 0 0 chr15 1533054 1533094 -84162660 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 167 36 4 chr15 1533094 1533246 -84162508 + AluJb SINE Alu 119 285 -27 380 313 37 82 chr15 1533246 1533321 -84162433 + MIR SINE MIR 184 261 -1 200 307 157 30 chr15 1535817 1536276 -84159478 + L2 LINE L2 2118 2634 -680 863 186 56 0 chr15 1536525 1536686 -84159068 - FAM SINE Alu -5 170 1 347 319 50 0 chr15 1536688 1536807 -84158947 + L2 LINE L2 3125 3249 -23 219 36 0 0 chr15 1537340 1537368 -84158386 + (A)n Simple_repeat Simple_repeat 1 28 0 1848 176 38 61 chr15 1537429 1537906 -84157848 - MLT1C LTR MaLR -1 466 1 811 189 34 34 chr15 1538569 1538744 -84157010 + FAM SINE Alu 1 175 0 22 35 0 0 chr15 1538744 1538773 -84156981 + AT_rich Low_complexity Low_complexity 1 29 0 1744 172 40 3 chr15 1538815 1539112 -84156642 + AluJo SINE Alu 1 308 -4 541 194 191 53 chr15 1539235 1539435 -84156319 - L1ME4a LINE L1 -4 6117 5946 1834 141 27 13 chr15 1539435 1539733 -84156021 - AluJb SINE Alu -10 302 1 541 194 191 53 chr15 1539733 1539887 -84155867 - L1ME4a LINE L1 -175 5946 5714 361 203 0 0 chr15 1540137 1540206 -84155548 + AluJ/FLAM SINE Alu 1 69 -233 231 186 0 0 chr15 1540244 1540287 -84155467 + G-rich Low_complexity Low_complexity 5 47 0 834 175 111 11 chr15 1540290 1540479 -84155275 + MER50 LTR ERV1 33 240 -494 * 1855 126 11 7 chr15 1540462 1540740 -84155014 + MER50 LTR ERV1 433 711 -23 292 254 0 0 chr15 1540744 1540799 -84154955 + FLAM SINE Alu 71 125 -8 186 328 107 8 chr15 1541056 1541187 -84154567 + MIR SINE MIR 3 146 -116 188 287 210 19 chr15 1541219 1541376 -84154378 - MIR SINE MIR -54 208 22 928 193 49 34 chr15 1541524 1541789 -84153965 - MER96B DNA MER1_type? 0 417 149 2296 72 31 7 chr15 1541820 1542113 -84153641 + AluY SINE Alu 1 300 -11 21 0 0 0 chr15 1542232 1542253 -84153501 + AT_rich Low_complexity Low_complexity 1 21 0 2119 88 56 7 chr15 1542308 1542592 -84153162 - AluSq SINE Alu -15 298 1 2188 120 7 0 chr15 1543790 1544098 -84151656 + AluSg SINE Alu 1 310 0 2294 104 0 0 chr15 1544158 1544456 -84151298 + AluSc SINE Alu 1 298 -11 662 137 24 0 chr15 1544505 1544629 -84151125 + L1MB3 LINE L1 6041 6167 -16 21 36 0 0 chr15 1544673 1544701 -84151053 + AT_rich Low_complexity Low_complexity 1 28 0 2144 118 10 7 chr15 1544866 1545163 -84150591 - AluSx SINE Alu -14 298 1 1407 202 65 110 chr15 1545176 1545687 -84150067 + MER20B DNA MER1_type 64 551 -232 21 0 0 0 chr15 1545687 1545708 -84150046 + AT_rich Low_complexity Low_complexity 1 21 0 2396 88 0 0 chr15 1546553 1546847 -84148907 + AluSg1 SINE Alu 2 295 -14 466 248 61 43 chr15 1546961 1547125 -84148629 + L1ME4a LINE L1 5696 5876 -245 1963 159 10 0 chr15 1547125 1547427 -84148327 + AluJb SINE Alu 2 306 -6 466 248 61 43 chr15 1547427 1547554 -84148200 + L1ME4a LINE L1 5876 5999 -122 268 338 81 5 chr15 1547997 1548354 -84147400 + L2 LINE L2 2593 2981 -291 2866 69 11 16 chr15 1548356 1548733 -84147021 + THE1C LTR MaLR 1 375 0 359 326 62 17 chr15 1548880 1549058 -84146696 + MIR SINE MIR 25 210 -52 238 274 20 78 chr15 1549186 1549288 -84146466 + L2 LINE L2 2992 3087 -185 312 299 47 19 chr15 1549519 1549626 -84146128 + L2 LINE L2 3163 3272 0 487 287 91 35 chr15 1550237 1550674 -84145080 + LTR33 LTR ERVL 23 521 0 655 221 23 0 chr15 1550702 1550833 -84144921 + MER94 DNA DNA 1 134 0 2047 134 7 0 chr15 1553268 1553559 -84142195 + AluSx SINE Alu 1 293 -19 731 161 0 0 chr15 1553634 1553752 -84142002 - FLAM_A SINE Alu -15 127 10 468 86 0 0 chr15 1553779 1553849 -84141905 - Alu SINE Alu 0 312 243 1386 82 66 6 chr15 1553961 1554143 -84141611 - AluY SINE Alu -118 193 1 928 156 0 19 chr15 1554278 1554432 -84141322 + AluJb SINE Alu 140 290 -22 225 154 77 0 chr15 1554440 1554505 -84141249 + GA-rich Low_complexity Low_complexity 1 70 0 466 60 0 0 chr15 1554685 1554752 -84141002 - Alu SINE Alu 0 310 244 754 147 16 0 chr15 1554752 1554881 -84140873 - L1MB3 LINE L1 -41 6142 6012 2035 141 3 0 chr15 1555116 1555430 -84140324 + AluSx SINE Alu 1 315 0 316 296 44 0 chr15 1555970 1556086 -84139668 - MIR SINE MIR -53 155 34 38 39 0 0 chr15 1556257 1556309 -84139445 + AT_rich Low_complexity Low_complexity 1 52 0 2092 141 0 3 chr15 1556315 1556614 -84139140 + AluSq SINE Alu 1 298 -15 612 246 0 0 chr15 1556616 1556738 -84139016 + FLAM_A SINE Alu 1 122 -11 979 188 11 11 chr15 1556772 1556953 -84138801 + AluJo SINE Alu 1 181 -131 1403 117 117 0 chr15 1556954 1557167 -84138587 - AluSx SINE Alu -15 297 60 710 182 0 0 chr15 1557173 1557294 -84138460 + AluJo SINE Alu 190 310 -2 1453 191 57 7 chr15 1557312 1557595 -84138159 + AluJb SINE Alu 1 297 -15 2009 157 0 0 chr15 1557596 1557890 -84137864 - AluSx SINE Alu -18 294 1 2506 68 0 0 chr15 1557898 1558191 -84137563 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 1558198 1558219 -84137535 + AT_rich Low_complexity Low_complexity 1 21 0 284 321 28 0 chr15 1558346 1558455 -84137299 - MIR SINE MIR -139 123 12 2074 126 11 0 chr15 1558775 1559061 -84136693 + AluSg SINE Alu 4 292 -18 1026 116 60 101 chr15 1559063 1559124 -84136630 - L1MB7 LINE L1 -16 6168 6106 1985 127 0 17 chr15 1559124 1559423 -84136331 - AluJo SINE Alu -13 299 6 1026 116 60 101 chr15 1559423 1559629 -84136125 - L1MB7 LINE L1 -78 6106 5912 409 304 192 14 chr15 1559633 1560117 -84135637 + L2 LINE L2 1823 2392 -922 306 166 59 27 chr15 1560123 1560230 -84135524 + AluJ/FLAM SINE Alu 2 86 -216 887 192 11 6 chr15 1560413 1560590 -84135164 + FRAM SINE Alu 1 173 -3 272 297 60 22 chr15 1560639 1560824 -84134930 + L2 LINE L2 2434 2625 -689 379 338 163 12 chr15 1560929 1561352 -84134402 + L2 LINE L2 2827 3313 0 1844 145 28 3 chr15 1561463 1561745 -84134009 - AluSx SINE Alu -23 289 1 1612 168 0 67 chr15 1562025 1562159 -84133595 + AluJo SINE Alu 1 142 -170 2470 83 0 0 chr15 1562159 1562461 -84133293 + AluY SINE Alu 1 302 -9 1612 168 0 67 chr15 1562461 1562641 -84133113 + AluJo SINE Alu 142 294 -18 1559 142 4 0 chr15 1563094 1563319 -84132435 + AluSq SINE Alu 35 260 -53 1714 131 0 46 chr15 1563347 1563483 -84132271 + AluSx SINE Alu 1 121 -191 2176 110 0 10 chr15 1563483 1563784 -84131970 + AluSg SINE Alu 1 298 -12 1714 131 0 46 chr15 1563784 1563907 -84131847 + AluSx SINE Alu 121 248 -64 2103 118 45 0 chr15 1564502 1564790 -84130964 - AluSx SINE Alu -11 301 1 1747 155 7 20 chr15 1564841 1565138 -84130616 + AluJo SINE Alu 17 309 -3 1837 170 7 0 chr15 1565143 1565432 -84130322 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr15 1565432 1565455 -84130299 + AT_rich Low_complexity Low_complexity 1 23 0 2038 131 3 0 chr15 1565498 1565803 -84129951 + AluSx SINE Alu 1 306 -6 1664 160 25 110 chr15 1565819 1566218 -84129536 + MLT1A1 LTR MaLR 1 365 0 1865 124 4 4 chr15 1566418 1566693 -84129061 + AluSg SINE Alu 1 275 -35 1801 116 40 4 chr15 1566986 1567284 -84128470 + AluSq SINE Alu 1 308 0 1116 144 5 21 chr15 1567394 1567582 -84128172 - AluJb SINE Alu -26 286 102 929 122 0 67 chr15 1567683 1567847 -84127907 - AluJo SINE Alu -159 153 1 539 256 56 17 chr15 1567847 1568027 -84127727 - MER47A DNA MER2_type -179 187 1 486 0 0 0 chr15 1569931 1569985 -84125769 + (TG)n Simple_repeat Simple_repeat 2 55 0 345 186 0 14 chr15 1571263 1571333 -84124421 - MLT1D LTR MaLR -7 498 430 228 302 83 0 chr15 1571351 1571447 -84124307 - U13 snRNA snRNA 0 104 1 * 780 223 51 17 chr15 1571443 1571850 -84123904 - MLT1D LTR MaLR -47 458 5 1513 178 13 7 chr15 1572186 1572489 -84123265 - AluJb SINE Alu -2 310 6 1871 126 3 30 chr15 1572511 1572813 -84122941 - AluSq SINE Alu -19 294 1 1386 185 57 4 chr15 1573832 1574113 -84121641 + AluJo SINE Alu 1 296 -16 2138 105 0 3 chr15 1574115 1574411 -84121343 + AluSx SINE Alu 1 295 -17 262 238 131 0 chr15 1574456 1574540 -84121214 - L1MC5 LINE L1 -866 7095 7001 2286 93 0 3 chr15 1575126 1575437 -84120317 - AluSp SINE Alu -3 310 1 876 188 109 0 chr15 1575437 1575593 -84120161 - AluJb SINE Alu -12 300 118 477 0 0 0 chr15 1575593 1575646 -84120108 + (TG)n Simple_repeat Simple_repeat 2 54 0 876 188 109 0 chr15 1575646 1575681 -84120073 - AluJb SINE Alu -194 118 88 191 114 29 0 chr15 1577420 1577455 -84118299 + CT-rich Low_complexity Low_complexity 2 37 0 4766 168 23 39 chr15 1577563 1578462 -84117292 + MER49 LTR ERV1 37 921 -2 222 37 0 0 chr15 1578474 1578501 -84117253 + (CA)n Simple_repeat Simple_repeat 2 28 0 840 238 21 0 chr15 1578501 1578684 -84117070 + ERVL LTR ERVL 1003 1189 -4575 313 146 10 21 chr15 1578686 1578782 -84116972 + (TTGG)n Simple_repeat Simple_repeat 1 95 0 3148 264 33 6 chr15 1578785 1579604 -84116150 + ERVL LTR ERVL 1174 2014 -3750 606 211 0 0 chr15 1579605 1579709 -84116045 - AluJ SINE Alu -207 105 2 1898 95 23 56 chr15 1579797 1579961 -84115793 - AluSg SINE Alu -15 295 144 2190 104 0 7 chr15 1579961 1580268 -84115486 - AluY SINE Alu -6 305 1 1898 95 23 56 chr15 1580268 1580408 -84115346 - AluSg SINE Alu -166 144 1 1955 135 0 0 chr15 1580903 1581191 -84114563 - AluSx SINE Alu -24 288 1 290 87 0 0 chr15 1581195 1581241 -84114513 - L1PA13 LINE L1 -129 6034 5989 * 1738 152 7 112 chr15 1581238 1581385 -84114369 + L1PA16 LINE L1 5769 5930 -236 3217 103 0 2 chr15 1581385 1581833 -84113921 - L1PA7 LINE L1 0 6154 5708 1738 152 7 112 chr15 1581833 1582105 -84113649 + L1PA16 LINE L1 5930 6144 -22 1531 161 15 68 chr15 1582110 1582201 -84113553 + L1PA16 LINE L1 5611 5705 -461 1973 113 7 0 chr15 1582201 1582483 -84113271 - AluSx SINE Alu -6 306 23 1531 161 15 68 chr15 1582483 1582715 -84113039 + L1PA16 LINE L1 5705 5917 -249 919 152 6 6 chr15 1582716 1582874 -84112880 + L1PA16 LINE L1 5761 5918 -248 994 145 0 6 chr15 1582875 1583034 -84112720 + L1PA16 LINE L1 5762 5919 -247 894 144 12 12 chr15 1583034 1583194 -84112560 + L1PA16 LINE L1 5762 5921 -245 * 1376 185 2 11 chr15 1583187 1583625 -84112129 + L1PA16 LINE L1 5718 6033 -133 2319 92 0 0 chr15 1583730 1584033 -84111721 - AluSx SINE Alu -9 303 1 572 186 0 0 chr15 1584168 1584310 -84111444 + L1PA16 LINE L1 6040 6181 0 367 276 4 15 chr15 1585513 1585779 -84109975 + (TG)n Simple_repeat Simple_repeat 1 262 0 344 148 0 0 chr15 1585791 1585845 -84109909 - Alu SINE Alu -3 298 245 1169 125 0 0 chr15 1585847 1586015 -84109739 + AluSg/x SINE Alu 94 261 -49 702 91 0 64 chr15 1586015 1586389 -84109365 + (CAGC)n Simple_repeat Simple_repeat 1 349 0 899 70 2 68 chr15 1586436 1587073 -84108681 + (CAGC)n Simple_repeat Simple_repeat 1 594 0 510 95 0 67 chr15 1587103 1587282 -84108472 + (CAGC)n Simple_repeat Simple_repeat 4 170 0 960 31 0 65 chr15 1587324 1587708 -84108046 + (CAGC)n Simple_repeat Simple_repeat 1 358 0 704 68 0 68 chr15 1587734 1587924 -84107830 + (CAGC)n Simple_repeat Simple_repeat 2 178 0 809 67 0 76 chr15 1587967 1588554 -84107200 + (CAGC)n Simple_repeat Simple_repeat 1 542 0 839 69 0 77 chr15 1588573 1589652 -84106102 + (CAGC)n Simple_repeat Simple_repeat 1 995 0 837 52 0 63 chr15 1589683 1589874 -84105880 + (CAGC)n Simple_repeat Simple_repeat 2 180 0 317 308 0 0 chr15 1590166 1590244 -84105510 + L2 LINE L2 3195 3272 0 235 243 230 0 chr15 1590272 1590346 -84105408 + L2 LINE L2 2605 2695 -619 192 182 0 0 chr15 1592166 1592210 -84103544 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 246 182 0 0 chr15 1592454 1592498 -84103256 - MLT1C LTR MaLR -17 488 445 635 223 117 51 chr15 1592506 1592780 -84102974 - MLT1C LTR MaLR -173 294 3 1127 292 16 7 chr15 1595381 1595689 -84100065 + L1MD2 LINE L1 20 330 -6079 561 251 18 54 chr15 1595698 1595865 -84099889 + L1MD2 LINE L1 388 548 -5861 427 123 27 0 chr15 1595865 1595938 -84099816 - MSTD LTR MaLR 0 396 322 5659 245 63 48 chr15 1596284 1597896 -84097858 + L1MD2 LINE L1 2661 4247 -2372 1963 173 64 50 chr15 1597896 1598318 -84097436 + MSTA LTR MaLR 1 428 0 5659 245 63 48 chr15 1598318 1600557 -84095197 + L1MD2 LINE L1 4247 6601 -18 419 358 32 5 chr15 1601904 1602094 -84093660 - L2 LINE L2 -1300 2014 1820 1235 121 0 0 chr15 1602094 1602276 -84093478 + L1PA10 LINE L1 5987 6168 0 1650 209 73 19 chr15 1602281 1602706 -84093048 + L1MB4 LINE L1 5731 6178 -2 53 30 0 0 chr15 1603401 1603468 -84092286 + AT_rich Low_complexity Low_complexity 1 67 0 245 300 43 0 chr15 1604005 1604075 -84091679 - L2 LINE L2 -2 3270 3198 21 0 0 0 chr15 1604445 1604466 -84091288 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 1604679 1604702 -84091052 + AT_rich Low_complexity Low_complexity 1 23 0 198 358 70 30 chr15 1605086 1605227 -84090527 - MIR3 SINE MIR -78 130 14 204 163 23 0 chr15 1606224 1606267 -84089487 + (TA)n Simple_repeat Simple_repeat 1 44 0 194 281 103 62 chr15 1606291 1606437 -84089317 - MIR SINE MIR -59 203 52 528 157 88 0 chr15 1606900 1607002 -84088752 + MER20 DNA MER1_type 77 187 -32 279 255 149 56 chr15 1607083 1607244 -84088510 + LTR16A LTR ERVL 182 357 -93 1633 70 43 66 chr15 1607530 1607788 -84087966 + AluY SINE Alu 54 305 -6 347 248 62 26 chr15 1607788 1607901 -84087853 + HERV16 LTR ERVL 86 202 -4794 1030 298 65 49 chr15 1607938 1608488 -84087266 + HERV16 LTR ERVL 192 750 -4246 6088 58 1 4 chr15 1608488 1609261 -84086493 - L1P LINE L1 -1725 4421 3651 7045 72 1 4 chr15 1609261 1610886 -84084868 + L1PA8 LINE L1 4551 6172 0 230 279 63 13 chr15 1611465 1611544 -84084210 + L2 LINE L2 3231 3313 0 1601 214 70 62 chr15 1611558 1611994 -84083760 + MLT1D LTR MaLR 1 443 -62 1765 101 79 8 chr15 1611994 1612261 -84083493 - AluSc SINE Alu -23 286 1 1601 214 70 62 chr15 1612261 1612325 -84083429 + MLT1D LTR MaLR 443 505 0 301 329 134 12 chr15 1612457 1612621 -84083133 + MIR SINE MIR 8 191 -71 310 292 142 31 chr15 1612901 1613127 -84082627 + MIR SINE MIR 12 262 0 330 240 74 50 chr15 1613271 1613392 -84082362 + L2 LINE L2 3187 3310 -3 253 284 4 13 chr15 1613549 1613625 -84082129 + MIR SINE MIR 65 144 -64 2827 165 0 25 chr15 1613783 1614293 -84081461 - LOR1a LTR ERV1 0 497 1 190 195 0 0 chr15 1616136 1616177 -84079577 - MIR SINE MIR -50 212 172 1425 198 74 14 chr15 1616797 1617241 -84078513 - L1M4 LINE L1 -1495 5045 4575 990 265 86 23 chr15 1617378 1618208 -84077546 - L1MDa LINE L1 -3257 3283 2394 305 256 108 77 chr15 1618351 1618546 -84077208 - L1M4 LINE L1 -1481 4665 4465 261 275 69 47 chr15 1618576 1618940 -84076814 - L1M4 LINE L1 -1716 4430 4059 4810 159 44 12 chr15 1619149 1619641 -84076113 - L1MA7 LINE L1 0 6291 5816 225 0 0 0 chr15 1619641 1619666 -84076088 + (TG)n Simple_repeat Simple_repeat 2 26 0 4810 159 44 12 chr15 1619666 1620364 -84075390 - L1MA7 LINE L1 -475 5816 5064 1920 176 40 0 chr15 1620366 1620631 -84075123 - L1P LINE L1 -1470 4676 4388 333 0 0 0 chr15 1620631 1620668 -84075086 + (TG)n Simple_repeat Simple_repeat 1 37 0 1920 176 40 0 chr15 1620668 1620799 -84074955 - L1P LINE L1 -1758 4388 4264 331 298 119 23 chr15 1620887 1621105 -84074649 - L1M4 LINE L1 -3229 2917 2679 29 84 0 0 chr15 1622738 1622809 -84072945 + AT_rich Low_complexity Low_complexity 1 71 0 239 331 61 14 chr15 1623553 1623701 -84072053 - MIR SINE MIR -57 205 51 2046 138 0 10 chr15 1624988 1625279 -84070475 + AluSx SINE Alu 1 288 -24 21 82 0 0 chr15 1625443 1625492 -84070262 + AT_rich Low_complexity Low_complexity 1 49 0 3621 165 90 4 chr15 1625579 1626300 -84069454 - L1PA8 LINE L1 0 6172 5390 3296 256 23 13 chr15 1626300 1627342 -84068412 + L1P LINE L1 1067 2118 -4028 1703 184 31 0 chr15 1627342 1627630 -84068124 - AluJb SINE Alu -13 299 3 395 290 83 5 chr15 1628318 1628535 -84067219 - L1ME3A LINE L1 -181 5989 5756 285 248 124 0 chr15 1628555 1628676 -84067078 - L1ME3A LINE L1 -474 5696 5561 3397 198 62 22 chr15 1628708 1629936 -84065818 - L1MB4 LINE L1 0 6180 4903 254 235 15 83 chr15 1630035 1630167 -84065587 - L1M2 LINE L1 -762 5404 5312 583 309 87 37 chr15 1630206 1630504 -84065250 - L1ME3A LINE L1 -933 5213 4901 29 84 0 0 chr15 1630720 1630791 -84064963 + AT_rich Low_complexity Low_complexity 1 71 0 654 313 85 20 chr15 1630792 1631369 -84064385 - L1ME3A LINE L1 -1780 4366 3828 2550 135 14 36 chr15 1631369 1631813 -84063941 + Tigger2a DNA MER2_type 1 434 0 654 313 85 20 chr15 1631813 1632254 -84063500 - L1ME3A LINE L1 -2318 3828 3281 2690 13 16 0 chr15 1632285 1632600 -84063154 - L1PA2 LINE L1 -2 6153 5834 229 278 44 44 chr15 1632882 1632972 -84062782 + MLT1H LTR MaLR 114 203 -346 311 172 21 97 chr15 1633188 1633325 -84062429 + MLT1H1 LTR MaLR 439 529 -26 298 340 21 14 chr15 1633528 1633672 -84062082 + MLT-int LTR MaLR 382 526 -1209 339 281 24 85 chr15 1633863 1634027 -84061727 - MIR3 SINE MIR -30 178 25 4218 167 50 11 chr15 1635179 1636028 -84059726 - L1MC1 LINE L1 0 6333 5452 204 122 0 0 chr15 1636695 1636736 -84059018 + (A)n Simple_repeat Simple_repeat 1 41 0 36938 39 4 0 chr15 1636921 1642423 -84053331 - L1PA4 LINE L1 -3 6152 632 208 296 120 28 chr15 1642587 1642695 -84053059 + MIR SINE MIR 90 207 -55 750 144 17 0 chr15 1642697 1642815 -84052939 - FRAM SINE Alu -14 162 43 1931 108 41 10 chr15 1643938 1644233 -84051521 + AluSx SINE Alu 1 304 -8 308 306 37 96 chr15 1644273 1644544 -84051210 - HAL1b LINE L1 -43 1305 1051 324 264 138 54 chr15 1644713 1645103 -84050651 - HAL1b LINE L1 -509 839 417 653 267 58 97 chr15 1645164 1645546 -84050208 - HAL1 LINE L1 -1391 1116 750 448 250 33 8 chr15 1646136 1646256 -84049498 + MLT1E1 LTR MaLR 5 127 -527 500 275 174 30 chr15 1646294 1646599 -84049155 + MLT1E1 LTR MaLR 305 653 -1 10357 229 76 14 chr15 1647056 1647917 -84047837 - L1PA16 LINE L1 -5 7599 6793 1499 167 50 56 chr15 1647917 1648294 -84047460 + THE1C LTR MaLR 1 375 0 10357 229 76 14 chr15 1648294 1652441 -84043313 - L1PA16 LINE L1 -811 6793 2271 296 296 10 10 chr15 1652761 1652859 -84042895 - L1PA16 LINE L1 -5399 2182 2085 788 375 19 19 chr15 1653000 1653586 -84042168 - L1PA16 LINE L1 -6201 1373 788 255 280 48 48 chr15 1654495 1654575 -84041179 + L1ME2 LINE L1 1061 1140 -5276 2274 99 10 0 chr15 1654575 1654877 -84040877 + AluSg SINE Alu 1 305 -5 255 280 48 48 chr15 1654877 1655089 -84040665 + L1ME2 LINE L1 1139 1353 -5063 346 305 65 41 chr15 1655107 1655370 -84040384 + L1ME2 LINE L1 1224 1442 -4882 1891 123 0 0 chr15 1655640 1655901 -84039853 + AluSq SINE Alu 1 261 -52 28 71 0 0 chr15 1655902 1655958 -84039796 + AT_rich Low_complexity Low_complexity 1 56 0 27 49 0 0 chr15 1656014 1656055 -84039699 + AT_rich Low_complexity Low_complexity 1 41 0 507 112 0 82 chr15 1656071 1656169 -84039585 - L1MB3 LINE L1 -41 6142 6053 1826 178 0 7 chr15 1656185 1656483 -84039271 + AluJo SINE Alu 1 296 -16 654 176 8 16 chr15 1656508 1656633 -84039121 - FLAM_A SINE Alu -9 124 1 1957 193 20 31 chr15 1656634 1657089 -84038665 - L1MB3 LINE L1 -118 6065 5616 1870 148 65 0 chr15 1657150 1657440 -84038314 - AluSx SINE Alu -3 309 1 341 198 16 95 chr15 1658516 1658613 -84037141 - MER96B DNA MER1_type? -34 383 297 2163 124 10 0 chr15 1658613 1658920 -84036834 + AluSx SINE Alu 1 310 -2 341 198 16 95 chr15 1658920 1658948 -84036806 - MER96B DNA MER1_type? -120 297 268 282 29 0 0 chr15 1658949 1658984 -84036770 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 1477 157 19 38 chr15 1658993 1659254 -84036500 - AluJo SINE Alu -56 256 1 822 290 41 0 chr15 1659297 1659518 -84036236 + MIR SINE MIR 13 242 -20 2282 96 0 0 chr15 1660010 1660301 -84035453 + AluSg SINE Alu 3 293 -17 1825 152 4 11 chr15 1660351 1660628 -84035126 + AluJo SINE Alu 1 275 -37 280 106 43 0 chr15 1660629 1660676 -84035078 + Alu SINE Alu 247 295 -7 385 197 68 8 chr15 1661397 1661514 -84034240 + L2 LINE L2 2360 2483 -831 671 155 0 14 chr15 1661522 1661664 -84034090 + C-rich Low_complexity Low_complexity 1 140 0 306 242 77 90 chr15 1662220 1662691 -84033063 + L1ME2 LINE L1 2001 6312 -132 2207 114 13 0 chr15 1662752 1663058 -84032696 + AluSg SINE Alu 1 310 0 638 235 47 35 chr15 1663480 1663650 -84032104 + MIR SINE MIR 69 240 -22 415 294 89 81 chr15 1663657 1664297 -84031457 + L1M2 LINE L1 451 1095 -5754 272 291 12 23 chr15 1665583 1665669 -84030085 + GA-rich Low_complexity Low_complexity 6 90 0 1462 175 111 43 chr15 1665842 1666213 -84029541 - MSTD LTR MaLR 0 396 1 821 122 0 0 chr15 1666628 1666743 -84029011 + AluSg/x SINE Alu 186 300 -10 4957 92 63 11 chr15 1666743 1667437 -84028317 + THE1C-int LTR MaLR 851 1580 0 1019 98 7 14 chr15 1667437 1667580 -84028174 + THE1C LTR MaLR 1 142 -233 1649 122 4 4 chr15 1667581 1667818 -84027936 + AluJo SINE Alu 76 312 0 1708 154 31 35 chr15 1667822 1668002 -84027752 + MLT1D LTR MaLR 180 360 -145 2316 96 0 0 chr15 1668002 1668304 -84027450 + AluY SINE Alu 1 302 -9 1708 154 31 35 chr15 1668304 1668441 -84027313 + MLT1D LTR MaLR 360 496 -9 2165 108 21 0 chr15 1668690 1668978 -84026776 + AluSx SINE Alu 1 294 -18 302 220 128 0 chr15 1669601 1669710 -84026044 + MIR SINE MIR 60 182 -80 180 259 19 0 chr15 1669889 1669943 -84025811 + MIR SINE MIR 30 84 -124 385 133 66 18 chr15 1670383 1670549 -84025205 + (CA)n Simple_repeat Simple_repeat 2 175 0 462 142 40 28 chr15 1670604 1670780 -84024974 + (CA)n Simple_repeat Simple_repeat 1 178 0 356 93 59 42 chr15 1670843 1670961 -84024793 + (TG)n Simple_repeat Simple_repeat 1 120 0 251 281 24 72 chr15 1671108 1671275 -84024479 + L1MC4 LINE L1 7883 8041 -1 234 266 31 0 chr15 1671436 1671500 -84024254 + MIR SINE MIR 79 144 -118 305 303 20 79 chr15 1671620 1671684 -84024070 - MER5A DNA MER1_type 0 189 123 1921 124 32 3 chr15 1671684 1671966 -84023788 + AluSx SINE Alu 1 290 -22 305 303 20 79 chr15 1671966 1672053 -84023701 - MER5A DNA MER1_type -66 123 47 2653 11 0 0 chr15 1673822 1674104 -84021650 - AluY SINE Alu -29 282 1 33 0 0 0 chr15 1675472 1675505 -84020249 + AT_rich Low_complexity Low_complexity 1 33 0 461 273 80 45 chr15 1675522 1676082 -84019672 + L1M4 LINE L1 3125 3704 -2442 3888 196 68 17 chr15 1676082 1677036 -84018718 - L1 LINE L1 -1023 5123 4121 * 5032 150 62 6 chr15 1677030 1677936 -84017818 + L1MA7 LINE L1 5334 6290 -1 2090 315 116 16 chr15 1677935 1679011 -84016743 + L1M4 LINE L1 3682 4865 -1281 * 1571 96 5 0 chr15 1679012 1679266 -84016488 + AluSg/x SINE Alu 81 335 0 464 291 11 22 chr15 1679302 1679481 -84016273 - MIR SINE MIR -1 261 85 2151 123 0 7 chr15 1679556 1679857 -84015897 + AluY SINE Alu 3 301 -10 2069 149 0 0 chr15 1679864 1680172 -84015582 + AluSx SINE Alu 1 308 -4 1974 124 11 3 chr15 1683457 1683740 -84012014 + AluSq SINE Alu 9 293 -20 23 33 0 0 chr15 1684263 1684293 -84011461 + AT_rich Low_complexity Low_complexity 1 30 0 348 281 74 35 chr15 1684569 1684800 -84010954 - MIR SINE MIR -7 255 16 404 253 10 10 chr15 1687508 1687607 -84008147 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr15 1688693 1688721 -84007033 + AT_rich Low_complexity Low_complexity 1 28 0 1696 143 0 104 chr15 1689626 1689961 -84005793 + AluSx SINE Alu 2 301 -11 566 157 0 0 chr15 1691610 1691699 -84004055 - AluJ/FLAM SINE Alu -222 90 2 622 132 0 0 chr15 1691924 1692015 -84003739 - FLAM_C SINE Alu -20 123 33 1055 39 0 0 chr15 1692015 1692143 -84003611 + L1PA4 LINE L1 6027 6154 -1 1406 180 32 18 chr15 1692479 1692757 -84002997 - AluJo SINE Alu -30 282 1 2094 109 7 14 chr15 1693047 1693331 -84002423 - AluJb SINE Alu -7 305 24 2336 110 0 0 chr15 1693628 1693928 -84001826 - AluSx SINE Alu -12 300 1 264 214 36 12 chr15 1694622 1694706 -84001048 + (TCTCTG)n Simple_repeat Simple_repeat 5 90 0 723 189 0 8 chr15 1695241 1695373 -84000381 + FLAM_C SINE Alu 1 131 -2 2398 85 0 19 chr15 1695431 1695748 -84000006 + AluY SINE Alu 1 311 0 2058 113 28 3 chr15 1695970 1696261 -83999493 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 1696540 1696563 -83999191 + AT_rich Low_complexity Low_complexity 1 23 0 216 319 132 0 chr15 1696603 1696694 -83999060 - L2 LINE L2 -2 3270 3168 2270 102 16 0 chr15 1696879 1697182 -83998572 + AluY SINE Alu 1 308 -3 2350 102 0 0 chr15 1697659 1697963 -83997791 + AluSx SINE Alu 1 304 -8 570 173 7 13 chr15 1698134 1698284 -83997470 + (TGGA)n Simple_repeat Simple_repeat 4 152 0 1079 205 157 40 chr15 1698456 1698831 -83996923 - MLT1C LTR MaLR -43 424 6 303 187 99 22 chr15 1699006 1699097 -83996657 - MIR SINE MIR -61 147 50 1866 163 10 0 chr15 1699221 1699510 -83996244 - AluJb SINE Alu -20 292 1 608 158 0 0 chr15 1699930 1700025 -83995729 - FLAM_A SINE Alu -32 110 16 406 236 57 0 chr15 1700658 1700781 -83994973 - MIR SINE MIR -108 154 25 181 79 0 53 chr15 1701237 1701275 -83994479 + (CCG)n Simple_repeat Simple_repeat 2 37 0 205 180 39 62 chr15 1701645 1701773 -83993981 + (CCCG)n Simple_repeat Simple_repeat 2 126 0 * 299 224 7 48 chr15 1701688 1701835 -83993919 + C-rich Low_complexity Low_complexity 3 143 0 24 0 0 0 chr15 1701835 1701859 -83993895 + GC_rich Low_complexity Low_complexity 1 24 0 243 297 11 22 chr15 1703181 1703272 -83992482 + (TG)n Simple_repeat Simple_repeat 1 90 0 275 236 114 24 chr15 1704380 1704503 -83991251 + MIR SINE MIR 72 205 -57 1872 159 0 3 chr15 1705140 1705429 -83990325 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr15 1705429 1705450 -83990304 + AT_rich Low_complexity Low_complexity 1 21 0 1562 236 63 5 chr15 1705856 1706283 -83989471 - L1MB7 LINE L1 0 6184 5733 195 42 0 0 chr15 1707287 1707311 -83988443 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 1474 226 58 0 chr15 1707381 1707709 -83988045 - MER7A DNA MER2_type -1 345 1 240 35 0 0 chr15 1708349 1708378 -83987376 + (T)n Simple_repeat Simple_repeat 1 29 0 332 257 203 51 chr15 1710103 1710418 -83985336 - L1MB7 LINE L1 -2145 5663 5301 2208 102 0 49 chr15 1710419 1710743 -83985011 - AluSx SINE Alu -4 308 1 2686 86 25 171 chr15 1711177 1711737 -83984017 - THE1C-int LTR MaLR -1102 478 1 1751 116 99 63 chr15 1711737 1711785 -83983969 - THE1C LTR MaLR 0 375 330 2273 95 3 0 chr15 1711785 1712119 -83983635 - AluY SINE Alu 0 335 1 2374 87 3 3 chr15 1712120 1712420 -83983334 - AluY SINE Alu -11 300 1 1751 116 99 63 chr15 1712420 1712730 -83983024 - THE1C LTR MaLR -44 331 1 843 180 0 62 chr15 1712730 1712748 -83983006 - AluJo SINE Alu -161 151 133 2354 90 0 3 chr15 1712748 1713048 -83982706 - AluY SINE Alu -12 299 1 2061 143 0 3 chr15 1713048 1713348 -83982406 - AluSx SINE Alu -12 300 1 843 180 0 62 chr15 1713348 1713489 -83982265 - AluJo SINE Alu -177 135 1 662 139 35 9 chr15 1713489 1713604 -83982150 - MLT1D LTR MaLR -387 118 1 242 276 198 0 chr15 1713690 1713805 -83981949 + Charlie7 DNA MER1_type 29 166 -2446 304 275 24 0 chr15 1713805 1713925 -83981829 - LTR50 LTR ERVL 0 795 402 956 271 85 48 chr15 1714001 1714056 -83981698 + Charlie7 DNA MER1_type 220 271 -2341 1811 171 0 10 chr15 1714056 1714360 -83981394 - AluJo SINE Alu -8 304 4 956 271 85 48 chr15 1714360 1714788 -83980966 + Charlie7 DNA MER1_type 271 721 -1891 412 261 5 72 chr15 1714787 1714837 -83980917 + Charlie7 DNA MER1_type 2420 2472 -140 * 2196 114 7 0 chr15 1714837 1715127 -83980627 + AluSx SINE Alu 1 292 -20 412 261 5 72 chr15 1715127 1715283 -83980471 + Charlie7 DNA MER1_type 2472 2612 0 2204 121 3 0 chr15 1715327 1715625 -83980129 + AluSq SINE Alu 1 299 -14 183 321 0 18 chr15 1715835 1715891 -83979863 - L2 LINE L2 -209 3063 3009 315 190 0 0 chr15 1715904 1715962 -83979792 - THE1A LTR MaLR -76 279 222 240 250 0 0 chr15 1715993 1716037 -83979717 + AluJ/monomer SINE Alu 1 44 -259 272 151 31 0 chr15 1716156 1716220 -83979534 + MIR SINE MIR 75 146 -62 320 294 0 12 chr15 1716970 1717055 -83978699 + MIR SINE MIR 5 88 -174 251 288 129 23 chr15 1717230 1717362 -83978392 - L1ME4a LINE L1 -38 6083 5938 411 252 64 9 chr15 1719625 1719752 -83976002 + MIR SINE MIR 34 173 -62 275 190 17 17 chr15 1720197 1720255 -83975499 - MLT1K LTR MaLR -8 580 523 28 29 0 0 chr15 1720260 1720295 -83975459 + AT_rich Low_complexity Low_complexity 1 35 0 2218 83 0 3 chr15 1720301 1720590 -83975164 - AluSq SINE Alu -25 288 1 485 200 147 74 chr15 1720591 1720781 -83974973 - MLT1K LTR MaLR -58 530 327 435 234 8 62 chr15 1720840 1720968 -83974786 + MLT1G LTR MaLR 93 213 -377 396 193 125 0 chr15 1720972 1721060 -83974694 + MLT1G LTR MaLR 471 569 -21 980 170 0 6 chr15 1721486 1721657 -83974097 + AluJb SINE Alu 121 290 -22 1905 155 0 13 chr15 1721660 1721976 -83973778 + AluSx SINE Alu 1 312 0 851 232 171 20 chr15 1722213 1722536 -83973218 - MLT1J LTR MaLR 0 493 139 2376 190 17 85 chr15 1722542 1723057 -83972697 - MER41D LTR ERV1 -22 535 61 2127 109 0 28 chr15 1723057 1723378 -83972376 - AluSq SINE Alu -1 312 1 2376 190 17 85 chr15 1723378 1723436 -83972318 - MER41D LTR ERV1 -496 61 1 500 259 30 15 chr15 1723436 1723571 -83972183 - MLT1J LTR MaLR -371 140 4 2011 90 54 0 chr15 1723651 1723930 -83971824 + AluY SINE Alu 1 294 -17 353 266 146 70 chr15 1723930 1724057 -83971697 + MIR SINE MIR 22 138 -124 1486 189 34 0 chr15 1724057 1724354 -83971400 - AluJo SINE Alu -5 307 1 373 221 110 31 chr15 1724355 1724518 -83971236 + MER104 DNA MER2_type 2 177 -3 353 266 146 70 chr15 1724518 1724587 -83971167 + MIR SINE MIR 137 235 -27 772 84 6 39 chr15 1724897 1725075 -83970679 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 518 152 5 33 chr15 1725136 1725320 -83970434 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 402 147 0 37 chr15 1725364 1725473 -83970281 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 914 258 119 12 chr15 1725504 1725923 -83969831 - MLT1C LTR MaLR -3 464 1 1758 154 0 14 chr15 1726690 1726975 -83968779 - AluJo SINE Alu -21 291 11 1720 252 89 19 chr15 1726994 1727557 -83968197 - MER20B DNA MER1_type -34 749 148 688 268 10 20 chr15 1727923 1728121 -83967633 + MIR SINE MIR 17 212 -50 2126 113 7 0 chr15 1728128 1728429 -83967325 - AluSp SINE Alu -10 303 1 1607 233 37 17 chr15 1728573 1729019 -83966735 - L1MB5 LINE L1 -58 6116 5665 203 276 181 9 chr15 1729082 1729187 -83966567 + MIR SINE MIR 31 153 -109 818 242 14 28 chr15 1729352 1729563 -83966191 - MER63A DNA MER1_type 0 210 3 285 286 164 21 chr15 1729797 1729937 -83965817 + MLT1L LTR MaLR 226 385 -230 1964 107 0 0 chr15 1730441 1730704 -83965050 + AluSc SINE Alu 16 278 -31 183 80 0 0 chr15 1730707 1730732 -83965022 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1038 126 16 33 chr15 1732170 1732352 -83963402 + AluJo SINE Alu 39 217 -95 266 152 0 0 chr15 1732353 1732404 -83963350 + AluJb SINE Alu 84 125 -177 1308 167 0 67 chr15 1732431 1732730 -83963024 + AluJo SINE Alu 7 285 -27 1946 117 0 0 chr15 1732754 1733028 -83962726 + AluSx SINE Alu 1 274 -38 306 0 0 0 chr15 1733447 1733481 -83962273 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 94 0 0 chr15 1733564 1733596 -83962158 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr15 1733681 1733716 -83962038 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 71 0 0 chr15 1733895 1733923 -83961831 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr15 1734012 1734053 -83961701 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr15 1734232 1734260 -83961494 + (TG)n Simple_repeat Simple_repeat 2 29 0 707 153 0 8 chr15 1734683 1734807 -83960947 + AluJo/FLAM SINE Alu 2 124 -188 2122 107 3 0 chr15 1734807 1735106 -83960648 - AluSx SINE Alu -12 300 1 1055 127 0 13 chr15 1735322 1735479 -83960275 - PABL_B LTR ERV1 0 667 513 231 175 62 0 chr15 1735609 1735664 -83960090 - Alu SINE Alu -253 50 1 1335 172 47 0 chr15 1735701 1735957 -83959797 + AluJo SINE Alu 30 297 -15 2017 132 0 0 chr15 1736233 1736537 -83959217 - AluSx SINE Alu -8 304 1 2171 103 0 10 chr15 1736749 1737059 -83958695 - AluSx SINE Alu -5 307 1 1815 137 0 0 chr15 1737216 1737500 -83958254 - AluSx SINE Alu -11 301 18 231 319 17 17 chr15 1737967 1738083 -83957671 + C-rich Low_complexity Low_complexity 4 119 0 5472 84 5 5 chr15 1738184 1738919 -83956835 + L1PA10 LINE L1 5425 6159 -9 1795 239 86 23 chr15 1739224 1739700 -83956054 - MER77 LTR ERV1 -36 569 64 236 184 224 31 chr15 1740556 1740654 -83955100 + MER103 DNA DNA 7 123 -43 486 300 33 42 chr15 1740786 1741026 -83954728 + MIR SINE MIR 13 250 -12 786 180 0 0 chr15 1741026 1741204 -83954550 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1956 137 0 0 chr15 1741827 1742126 -83953628 + AluSq SINE Alu 1 299 -14 198 287 0 0 chr15 1742631 1742718 -83953036 + G-rich Low_complexity Low_complexity 1 87 0 8725 119 16 2 chr15 1742824 1744621 -83951133 - L1P4 LINE L1 -350 5818 4002 283 291 73 24 chr15 1745005 1745156 -83950598 + MIR3 SINE MIR 4 159 -69 275 254 0 0 chr15 1745213 1745268 -83950486 - L2 LINE L2 -8 3264 3210 294 301 44 18 chr15 1745338 1745451 -83950303 + L1MC5 LINE L1 7798 7913 -48 1579 173 16 36 chr15 1745462 1745769 -83949985 - AluJo SINE Alu -11 301 1 334 291 82 6 chr15 1745772 1745930 -83949824 - MIR SINE MIR -59 203 34 447 19 0 0 chr15 1746443 1746495 -83949259 + (TG)n Simple_repeat Simple_repeat 2 53 0 267 203 0 0 chr15 1747533 1747592 -83948162 + (TG)n Simple_repeat Simple_repeat 1 59 0 291 333 51 7 chr15 1747679 1747817 -83947937 + L3 LINE CR1 235 378 -1199 389 259 105 49 chr15 1747872 1748119 -83947635 - L1MC4a LINE L1 -1642 6166 5906 185 266 125 0 chr15 1748130 1748194 -83947560 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr15 1748511 1748568 -83947186 + L2 LINE L2 3262 3311 -2 483 298 160 0 chr15 1749644 1749832 -83945922 + MIR SINE MIR 42 259 -3 238 243 186 0 chr15 1749947 1750017 -83945737 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr15 1750034 1750068 -83945686 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1277 218 19 16 chr15 1752634 1752951 -83942803 + MER65A LTR ERV1 1 318 -127 1038 294 59 54 chr15 1752952 1753596 -83942158 - MER89-int LTR ERV1 -1669 5132 4486 687 229 127 0 chr15 1754219 1754376 -83941378 - MER89-int LTR ERV1 -1594 5207 5031 256 313 88 33 chr15 1755494 1755734 -83940020 + L1MCb LINE L1 571 823 -5222 2317 71 0 3 chr15 1755837 1756134 -83939620 + AluY SINE Alu 1 296 -15 7029 37 6 0 chr15 1756192 1757024 -83938730 + L1PA5 LINE L1 5317 6153 -1 515 300 88 35 chr15 1759410 1759840 -83935914 - L1MC4a LINE L1 -612 5732 5280 259 247 43 0 chr15 1759850 1759943 -83935811 - L1MC4a LINE L1 -853 5293 5197 1144 299 39 29 chr15 1760096 1760717 -83935037 - L1MC3 LINE L1 -621 7164 6538 281 231 11 22 chr15 1760789 1760817 -83934937 + (TAGA)n Simple_repeat Simple_repeat 4 31 -62 186 43 0 0 chr15 1760817 1760840 -83934914 + (CATA)n Simple_repeat Simple_repeat 3 25 0 281 231 11 22 chr15 1760840 1760902 -83934852 + (TAGA)n Simple_repeat Simple_repeat 31 93 0 621 283 52 13 chr15 1761130 1761360 -83934394 - MER89-int LTR ERV1 -3076 3725 3487 1957 203 5 3 chr15 1761689 1762063 -83933691 - L1PA16 LINE L1 -290 5876 5502 409 214 0 0 chr15 1762062 1762146 -83933608 - L1P4 LINE L1 -581 5585 5502 * 509 146 0 0 chr15 1762145 1762227 -83933527 - L1P4 LINE L1 -581 5585 5504 2418 219 23 23 chr15 1762227 1763255 -83932499 - L1P4 LINE L1 -580 5586 4562 4620 254 40 19 chr15 1763261 1764774 -83930980 + L1P4 LINE L1 3001 4544 -1602 765 279 50 47 chr15 1764820 1765200 -83930554 - MER89-int LTR ERV1 -2111 4690 4310 675 317 28 41 chr15 1765198 1765561 -83930193 - MER89-int LTR ERV1 -2647 4154 3797 * 446 299 46 10 chr15 1765607 1765801 -83929953 - MER89-int LTR ERV1 -3095 3706 3506 368 136 0 0 chr15 1766387 1766446 -83929308 + Alu SINE Alu 242 300 -2 1749 155 0 0 chr15 1767971 1768248 -83927506 + AluSx SINE Alu 11 287 -25 1136 228 36 69 chr15 1769521 1769912 -83925842 + MLT1B LTR MaLR 2 379 -11 220 308 104 57 chr15 1770875 1771210 -83924544 - L2 LINE L2 -1648 1666 1316 381 250 37 63 chr15 1771283 1771456 -83924298 - L1M4c LINE L1 -4258 2475 1928 1475 230 22 0 chr15 1771457 1771774 -83923980 + MER7A DNA MER2_type 2 323 -23 1918 126 3 20 chr15 1771779 1772081 -83923673 - AluSx SINE Alu -15 297 1 524 318 30 35 chr15 1772131 1772499 -83923255 - L1M4c LINE L1 -4874 1779 1414 274 340 0 0 chr15 1772790 1772896 -83922858 + L1MCb LINE L1 726 831 -5214 404 152 0 29 chr15 1774341 1774446 -83921308 + (TG)n Simple_repeat Simple_repeat 2 103 0 593 269 73 53 chr15 1776188 1776732 -83919022 - L1MC/D LINE L1 -771 5375 5170 23 33 0 0 chr15 1776757 1776787 -83918967 + AT_rich Low_complexity Low_complexity 1 30 0 2077 278 92 14 chr15 1776898 1777769 -83917985 - L1MC3 LINE L1 -657 7128 6190 320 288 75 27 chr15 1777735 1778030 -83917724 + L1MC3 LINE L1 5904 6212 -1573 * 26 0 0 0 chr15 1778133 1778159 -83917595 + AT_rich Low_complexity Low_complexity 1 26 0 1755 102 102 0 chr15 1782140 1782406 -83913348 + AluSp SINE Alu 1 293 -20 22 35 0 0 chr15 1782498 1782527 -83913227 + AT_rich Low_complexity Low_complexity 1 29 0 264 30 0 0 chr15 1782599 1782632 -83913122 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 1782644 1782666 -83913088 + AT_rich Low_complexity Low_complexity 1 22 0 384 284 70 0 chr15 1783198 1783399 -83912355 - L1MD3 LINE L1 -11 7984 7770 308 276 86 0 chr15 1783718 1783870 -83911884 - L1MCa LINE L1 -3711 2715 2551 574 318 75 38 chr15 1783959 1784540 -83911214 - L1MCa LINE L1 -4236 2371 1680 309 228 30 30 chr15 1785612 1785713 -83910041 + L1ME LINE L1 5698 5798 -368 1229 286 101 14 chr15 1785782 1786417 -83909337 + L1PA13 LINE L1 529 1258 -5529 2364 168 21 9 chr15 1786420 1786844 -83908910 + L1PA13 LINE L1 1396 1824 -4963 * 2890 210 34 16 chr15 1786836 1787574 -83908180 + L1MA7 LINE L1 5541 6291 0 473 305 66 5 chr15 1787585 1787798 -83907956 + L1M4 LINE L1 5172 5397 -749 456 72 24 24 chr15 1787924 1788007 -83907747 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 222 37 0 0 chr15 1788009 1788036 -83907718 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 508 311 0 0 chr15 1788460 1788595 -83907159 + MER70B LTR ERVL 90 224 -354 327 271 211 12 chr15 1788633 1788880 -83906874 - L1MCa LINE L1 -4206 2220 1925 * 1471 164 21 0 chr15 1788872 1789159 -83906595 - L1 LINE L1 -1404 4742 4450 366 174 0 54 chr15 1789172 1789264 -83906490 + L1MA2 LINE L1 6218 6304 0 589 292 65 26 chr15 1789327 1789808 -83905946 + L1MC3 LINE L1 5254 6040 -160 672 305 38 0 chr15 1789946 1790159 -83905595 - HERVL74 LTR ERVL -3785 1900 1680 1924 130 0 17 chr15 1790745 1791038 -83904716 + AluSx SINE Alu 5 292 -20 301 232 0 0 chr15 1791041 1791097 -83904657 + L1MC4 LINE L1 6648 6703 -1339 1531 109 23 9 chr15 1791290 1791510 -83904244 + PABL_B LTR ERV1 445 667 0 2073 103 3 7 chr15 1791726 1792027 -83903727 + AluSx SINE Alu 1 300 -12 687 161 0 8 chr15 1792027 1792151 -83903603 - AluJo/FLAM SINE Alu -188 124 2 198 71 0 0 chr15 1792574 1792602 -83903152 + (CA)n Simple_repeat Simple_repeat 2 29 0 291 28 0 0 chr15 1792781 1792817 -83902937 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 94 0 0 chr15 1792904 1792936 -83902818 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr15 1793019 1793051 -83902703 + (CA)n Simple_repeat Simple_repeat 2 33 0 1946 117 0 0 chr15 1793470 1793744 -83902010 - AluSx SINE Alu -38 274 1 551 329 83 28 chr15 1793849 1794284 -83901470 + L1MCb LINE L1 114 572 -5473 2094 128 0 0 chr15 1796417 1796729 -83899025 - AluSx SINE Alu 0 312 1 461 291 41 67 chr15 1796799 1796874 -83898880 - L1MC/D LINE L1 -2069 5716 5641 2043 91 0 4 chr15 1796874 1797178 -83898576 + AluSg1 SINE Alu 6 308 0 461 291 41 67 chr15 1797178 1797445 -83898309 - L1MC/D LINE L1 -2144 5641 5382 1900 244 65 2 chr15 1797476 1797906 -83897848 + LTR32 LTR ERVL 15 471 0 945 299 19 23 chr15 1797924 1798458 -83897296 + HERVL32 LTR ERVL 19 590 -2828 1760 253 20 44 chr15 1798467 1799024 -83896730 + HERVL32 LTR ERVL 2309 2856 -562 1171 253 37 53 chr15 1799144 1799826 -83895928 + HERVL32 LTR ERVL 612 1326 -2092 * 3222 239 65 63 chr15 1799819 1800871 -83894883 + HERVL32 LTR ERVL 1627 2680 -738 1518 216 24 32 chr15 1800897 1801277 -83894477 + MLT1B LTR MaLR 14 390 0 1244 314 55 43 chr15 1802918 1803678 -83892076 + MER89-int LTR ERV1 3526 4294 -2507 1799 178 41 25 chr15 1804489 1804883 -83890871 - L1MA7 LINE L1 -25 6266 5867 644 49 0 0 chr15 1804889 1804970 -83890784 + L1M3 LINE L1 5389 5469 -865 1709 218 39 13 chr15 1804972 1805357 -83890397 - MSTD LTR MaLR -1 395 1 2226 244 150 55 chr15 1805372 1805723 -83890031 - MSTD-int LTR MaLR -17 1718 1402 5089 38 10 3 chr15 1805723 1806337 -83889417 + L1PA3 LINE L1 5538 6155 0 2226 244 150 55 chr15 1806337 1806787 -83888967 - MSTD-int LTR MaLR -333 1402 841 1601 260 30 2 chr15 1806848 1807279 -83888475 - MSTD-int LTR MaLR -1291 444 2 1439 209 38 62 chr15 1807281 1807654 -83888100 - MSTD LTR MaLR 0 396 33 1942 121 4 0 chr15 1811170 1811473 -83884281 - AluSx SINE Alu 0 304 1 624 255 1 10 chr15 1812198 1812380 -83883374 - L1MB1 LINE L1 0 6168 6008 2465 220 39 15 chr15 1812410 1813049 -83882705 - L1 LINE L1 -1888 4258 3601 1859 89 4 0 chr15 1813049 1813323 -83882431 + AluY SINE Alu 38 312 0 500 208 78 13 chr15 1813345 1813499 -83882255 - L1 LINE L1 -2645 3501 3338 359 280 59 51 chr15 1813804 1814040 -83881714 + L1MC5 LINE L1 7530 7767 -194 722 274 145 13 chr15 1814171 1814551 -83881203 + MLT1D LTR MaLR 1 430 -75 3999 258 68 25 chr15 1814561 1816881 -83878873 + HERVL74 LTR ERVL 1196 3652 -2033 527 236 51 67 chr15 1816885 1817063 -83878691 + HERVL74 LTR ERVL 3890 4064 -1621 1100 291 43 39 chr15 1817088 1817712 -83878042 + HERVL74 LTR ERVL 4611 5268 -417 613 268 24 24 chr15 1817730 1817935 -83877819 + HERVL74 LTR ERVL 5393 5597 -88 831 285 43 32 chr15 1817993 1818340 -83877414 + MER74B LTR ERVL 60 410 -212 1332 313 93 31 chr15 1819830 1820794 -83874960 - L1M4b LINE L1 -5814 1045 22 457 308 73 40 chr15 1820808 1821136 -83874618 - L1MCa LINE L1 -4761 1665 1327 11074 203 38 29 chr15 1821325 1824684 -83871070 - L1PA13 LINE L1 -3424 3373 1 2166 209 41 16 chr15 1824690 1825207 -83870547 + L1MC3 LINE L1 5580 6109 -1676 7366 202 41 8 chr15 1825230 1827863 -83867891 + L1MA9 LINE L1 3356 6081 -231 435 221 31 0 chr15 1827865 1827992 -83867762 + L1MA9 LINE L1 6180 6310 -2 1351 204 18 0 chr15 1828015 1828353 -83867401 + L1 LINE L1 4328 4671 -1475 904 290 87 8 chr15 1828353 1828732 -83867022 - L2 LINE L2 -1564 1750 1342 21 36 0 0 chr15 1828803 1828831 -83866923 + AT_rich Low_complexity Low_complexity 1 28 0 572 406 31 16 chr15 1829587 1830149 -83865605 + L2 LINE L2 2722 3292 -21 196 300 38 38 chr15 1832016 1832096 -83863658 - MIR3 SINE MIR -3 205 126 2234 74 3 14 chr15 1832743 1833070 -83862684 + AluY SINE Alu 1 324 0 254 73 24 0 chr15 1833201 1833242 -83862512 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 223 302 16 0 chr15 1833418 1833481 -83862273 + (CA)n Simple_repeat Simple_repeat 1 64 0 2132 181 26 16 chr15 1833632 1834062 -83861692 - Tigger2a DNA MER2_type 0 434 1 279 299 0 59 chr15 1834891 1835078 -83860676 + CT-rich Low_complexity Low_complexity 3 178 0 185 327 0 0 chr15 1835702 1835757 -83859997 + MIR3 SINE MIR 123 177 -31 254 287 36 28 chr15 1835833 1835973 -83859781 + MIR SINE MIR 60 197 -65 279 54 0 0 chr15 1837281 1837318 -83858436 + (TA)n Simple_repeat Simple_repeat 1 37 0 29255 105 8 20 chr15 1837451 1842919 -83852835 + L1PA7 LINE L1 1 5487 -982 258 56 0 0 chr15 1842919 1842955 -83852799 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 29255 105 8 20 chr15 1842955 1843905 -83851849 + L1PA7 LINE L1 5487 6446 -23 813 213 64 13 chr15 1843905 1844140 -83851614 + MER96B DNA MER1_type? 148 394 -23 33 80 0 0 chr15 1844380 1844455 -83851299 + AT_rich Low_complexity Low_complexity 1 75 0 222 370 0 0 chr15 1844598 1844698 -83851056 + GA-rich Low_complexity Low_complexity 3 102 0 2939 121 11 6 chr15 1844785 1845255 -83850499 + MER84 LTR ERVI 36 507 0 953 105 0 25 chr15 1845764 1845926 -83849828 + L1P4 LINE L1 5333 5490 -671 2558 47 0 19 chr15 1845926 1846243 -83849511 + AluY SINE Alu 1 311 0 1765 265 99 42 chr15 1846433 1847001 -83848753 - L1M4 LINE L1 -1822 4324 3790 2285 84 7 0 chr15 1847001 1847298 -83848456 + AluY SINE Alu 1 299 -12 1765 265 99 42 chr15 1847298 1847872 -83847882 - L1M4 LINE L1 -2356 3790 3117 * 3103 157 51 16 chr15 1847871 1848690 -83847064 - L1PA15 LINE L1 -324 5841 4984 752 41 0 10 chr15 1848690 1848787 -83846967 + L1PA4 LINE L1 6057 6152 -3 3103 157 51 16 chr15 1848787 1849102 -83846652 - L1PA15 LINE L1 -1181 4984 4681 10757 241 24 40 chr15 1849103 1853435 -83842319 - L1PA12 LINE L1 -816 6768 2554 5908 231 31 15 chr15 1853460 1855186 -83840568 + L1PA15 LINE L1 2143 3896 -2250 1594 196 43 0 chr15 1855175 1855547 -83840207 + L1PA15 LINE L1 4846 5233 -913 * 1095 99 13 0 chr15 1855549 1855700 -83840054 + AluSc SINE Alu 150 302 -7 2279 101 0 3 chr15 1855710 1856006 -83839748 + AluSq SINE Alu 1 295 -18 4841 127 6 10 chr15 1856007 1856818 -83838936 + L1PA15 LINE L1 5357 6164 -1 1214 273 11 5 chr15 1856865 1857232 -83838522 - L1PA12 LINE L1 -5025 2556 2188 777 286 107 56 chr15 1857470 1859024 -83836730 - L1PA12 LINE L1 -5399 2182 22 204 140 40 20 chr15 1859245 1859295 -83836459 + T-rich Low_complexity Low_complexity 5 55 0 1658 220 80 78 chr15 1859971 1860608 -83835146 + LTR9B LTR ERV1 7 644 0 401 158 29 0 chr15 1860793 1860932 -83834822 + (TA)n Simple_repeat Simple_repeat 1 143 0 43 0 0 0 chr15 1860937 1860980 -83834774 + AT_rich Low_complexity Low_complexity 1 43 0 194 379 107 12 chr15 1861108 1861277 -83834477 + L2 LINE L2 2725 2909 -405 252 258 11 75 chr15 1861289 1861382 -83834372 + L2 LINE L2 3184 3270 -2 311 280 57 45 chr15 1862730 1862887 -83832867 + L1ME1 LINE L1 5998 6156 -10 1849 154 32 0 chr15 1863623 1863908 -83831846 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr15 1864876 1864899 -83830855 + AT_rich Low_complexity Low_complexity 1 23 0 249 328 0 35 chr15 1864966 1865140 -83830614 + T-rich Low_complexity Low_complexity 2 169 0 39 22 0 0 chr15 1867309 1867355 -83828399 + AT_rich Low_complexity Low_complexity 1 46 0 729 307 137 30 chr15 1867914 1868638 -83827116 - L2 LINE L2 -34 3279 2474 28 79 0 0 chr15 1868708 1868771 -83826983 + AT_rich Low_complexity Low_complexity 1 63 0 1713 268 39 40 chr15 1868930 1869609 -83826145 - L1ME2 LINE L1 -16 6148 5465 1740 191 148 41 chr15 1869612 1870100 -83825654 + MER74A LTR ERVL 19 558 0 442 194 31 0 chr15 1870614 1870712 -83825042 - L1ME2 LINE L1 -744 5418 5318 548 244 39 17 chr15 1870754 1870984 -83824770 - L1ME2 LINE L1 -916 5230 4996 1819 164 13 0 chr15 1871096 1871401 -83824353 + AluSx SINE Alu 1 309 -3 3131 167 22 4 chr15 1871527 1872067 -83823687 + MER44D DNA MER2_type 1 605 0 385 226 11 11 chr15 1872067 1872152 -83823602 + L1MC4 LINE L1 6616 6703 -1339 180 0 0 0 chr15 1872152 1872172 -83823582 + (TG)n Simple_repeat Simple_repeat 2 21 0 26 82 0 0 chr15 1872529 1872590 -83823164 + AT_rich Low_complexity Low_complexity 1 61 0 706 203 120 52 chr15 1873082 1873274 -83822480 - MER20 DNA MER1_type -2 217 13 23 0 0 0 chr15 1877031 1877054 -83818700 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr15 1878617 1878672 -83817082 + (CA)n Simple_repeat Simple_repeat 1 55 0 376 289 141 34 chr15 1878880 1879023 -83816731 - L2 LINE L2 0 3313 3187 223 27 27 27 chr15 1879023 1879060 -83816694 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 376 289 141 34 chr15 1879060 1879179 -83816575 - L2 LINE L2 -126 3187 3023 416 327 194 32 chr15 1879330 1879473 -83816281 - L2 LINE L2 0 3313 3195 223 27 27 27 chr15 1879473 1879510 -83816244 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 416 327 194 32 chr15 1879510 1879921 -83815833 - L2 LINE L2 -118 3195 2653 432 0 0 0 chr15 1879931 1879979 -83815775 + (TA)n Simple_repeat Simple_repeat 2 49 0 275 259 89 27 chr15 1880657 1880769 -83814985 + MIR3 SINE MIR 82 200 -8 270 242 17 39 chr15 1881178 1881356 -83814398 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 298 90 51 13 chr15 1881358 1881436 -83814318 + (TA)n Simple_repeat Simple_repeat 2 82 0 1764 145 28 3 chr15 1881484 1881766 -83813988 - MER72 LTR ERV1 0 722 434 1685 191 3 7 chr15 1881768 1882067 -83813687 - MER72 LTR ERV1 -420 302 5 570 206 59 7 chr15 1882077 1882213 -83813541 + MIR SINE MIR 45 187 -75 307 318 100 0 chr15 1882472 1882582 -83813172 + L2 LINE L2 3152 3272 0 22447 28 0 0 chr15 1882930 1886409 -83809345 + L1PA2 LINE L1 2702 6180 0 2340 193 27 27 chr15 1887610 1888127 -83807627 + L1MA9 LINE L1 5267 5783 -385 671 336 47 26 chr15 1888127 1888555 -83807199 + L1MA9 LINE L1 1360 1796 -5700 969 268 113 95 chr15 1888654 1889644 -83806110 - MER52A LTR ERV1 0 1755 630 11847 218 67 27 chr15 1889706 1894375 -83801379 + L1MA9 LINE L1 2061 7021 -710 2411 128 8 31 chr15 1894375 1894759 -83800995 + THE1C LTR MaLR 1 375 0 11847 218 67 27 chr15 1894759 1895501 -83800253 + L1MA9 LINE L1 7021 7731 0 306 98 0 20 chr15 1895496 1895547 -83800207 + L1MA9 LINE L1 5771 5820 -348 * 2028 157 31 19 chr15 1895553 1895968 -83799786 + L1MA9 LINE L1 5892 6311 -1 425 217 33 0 chr15 1896481 1896573 -83799181 + U13 snRNA snRNA 1 95 -9 775 317 117 14 chr15 1896632 1897213 -83798541 - HAL1 LINE L1 -726 1781 1141 435 280 45 91 chr15 1897739 1897982 -83797772 - HAL1 LINE L1 -2185 322 91 204 216 39 0 chr15 1899238 1899289 -83796465 + A-rich Low_complexity Low_complexity 4 56 0 24 0 0 0 chr15 1900980 1901004 -83794750 + AT_rich Low_complexity Low_complexity 1 24 0 459 325 74 12 chr15 1901733 1901896 -83793858 + MIR SINE MIR 20 192 -70 439 263 109 6 chr15 1902112 1902268 -83793486 - MIR SINE MIR 0 262 91 960 144 0 0 chr15 1902434 1902580 -83793174 - AluSg/x SINE Alu -23 289 144 1074 269 13 8 chr15 1902769 1903007 -83792747 - MIR SINE MIR -22 240 2 734 275 68 13 chr15 1903737 1903973 -83791781 + MIR SINE MIR 13 261 -1 182 363 99 0 chr15 1905192 1905283 -83790471 - L2 LINE L2 0 3272 3173 232 318 47 54 chr15 1905382 1905511 -83790243 - MIR3 SINE MIR -31 177 50 215 61 30 0 chr15 1905903 1905936 -83789818 + (TC)n Simple_repeat Simple_repeat 1 34 0 404 200 27 36 chr15 1906563 1906673 -83789081 + L1MA8 LINE L1 6180 6288 -3 481 189 147 32 chr15 1906936 1907126 -83788628 + L1MC3 LINE L1 7574 7785 0 2389 144 100 4 chr15 1907214 1907664 -83788090 - L1PA16 LINE L1 -2 6164 5672 420 49 98 0 chr15 1907682 1907804 -83787950 + (TA)n Simple_repeat Simple_repeat 1 134 0 2051 204 13 7 chr15 1907842 1908531 -83787223 - L1PA16 LINE L1 -534 5632 4939 * 3016 215 12 19 chr15 1908530 1909301 -83786453 + L1 LINE L1 3061 3825 -2321 2075 113 21 0 chr15 1910223 1910514 -83785240 + AluSq SINE Alu 1 297 -16 1298 139 22 0 chr15 1911176 1911399 -83784355 + L1MA4 LINE L1 6070 6297 -3 2036 126 14 3 chr15 1911458 1911752 -83784002 + AluSx SINE Alu 1 297 -15 387 0 0 0 chr15 1912179 1912222 -83783532 + (TG)n Simple_repeat Simple_repeat 1 43 0 213 65 0 0 chr15 1914856 1914887 -83780867 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 303 351 54 30 chr15 1915150 1915318 -83780436 + MIR SINE MIR 19 190 -72 403 257 68 24 chr15 1918737 1918943 -83776811 - LTR37B LTR ERV1 0 468 254 457 92 77 0 chr15 1918943 1919008 -83776746 + L1PA13 LINE L1 6088 6157 -6 248 211 0 18 chr15 1919056 1919113 -83776641 - LTR37B LTR ERV1 -221 247 192 5046 140 19 8 chr15 1919265 1920063 -83775691 - L1MA2 LINE L1 0 6304 5498 3692 35 12 5 chr15 1920163 1920592 -83775162 + L1PA3 LINE L1 5723 6154 -1 1474 277 63 39 chr15 1920593 1921545 -83774209 + L1MA3 LINE L1 2265 3403 -4163 2762 247 38 23 chr15 1921686 1922557 -83773197 + L1P LINE L1 2790 3673 -2473 3642 203 60 5 chr15 1922560 1923431 -83772323 + L1MA3 LINE L1 4418 5336 -2229 * 6489 131 31 1 chr15 1923425 1924505 -83771249 + L1MA3 LINE L1 6614 7724 0 3940 190 51 29 chr15 1924499 1925153 -83770601 + L1 LINE L1 3026 3711 -2435 * 216 0 0 0 chr15 1925153 1925177 -83770577 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3940 190 51 29 chr15 1925177 1925517 -83770237 + L1 LINE L1 3711 4042 -2104 1853 204 25 32 chr15 1925519 1925926 -83769828 + MSTB LTR MaLR 23 426 0 713 296 16 11 chr15 1926030 1926216 -83769538 + L2 LINE L2 2889 3075 -238 684 177 0 0 chr15 1926219 1926332 -83769422 + L1MA7 LINE L1 5997 6109 -182 1088 191 123 52 chr15 1926352 1926661 -83769093 + MER2 DNA MER2_type 12 342 -3 645 150 78 7 chr15 1926663 1926816 -83768938 + L1MA8 LINE L1 6107 6270 -21 371 275 69 61 chr15 1927102 1927349 -83768405 + L2 LINE L2 3065 3313 0 36 0 0 0 chr15 1927352 1927388 -83768366 + AT_rich Low_complexity Low_complexity 1 36 0 7816 162 25 4 chr15 1927749 1929185 -83766569 - L1 LINE L1 -883 5263 3798 2322 132 3 23 chr15 1929185 1929571 -83766183 + L1MA2 LINE L1 5926 6304 0 2181 113 0 28 chr15 1929592 1930099 -83765655 + AluSq SINE Alu 1 313 0 419 167 11 0 chr15 1930117 1930207 -83765547 + GA-rich Low_complexity Low_complexity 2 92 0 7779 179 43 18 chr15 1930215 1932109 -83763645 + L1M2 LINE L1 3663 5620 -680 186 216 0 0 chr15 1932120 1932157 -83763597 + L2 LINE L2 3277 3313 0 827 322 77 53 chr15 1936651 1937383 -83758371 + ERVL LTR ERVL 3603 4351 -1413 184 290 87 0 chr15 1937791 1937860 -83757894 + MER5A DNA MER1_type 2 76 -113 2926 277 21 39 chr15 1937861 1939410 -83756344 + L1M3b LINE L1 3 1287 -4994 19237 33 9 0 chr15 1939411 1942375 -83753379 + L1PA3 LINE L1 3178 6155 0 520 293 54 0 chr15 1942376 1942543 -83753211 - MST-int LTR MaLR -314 1337 1162 267 73 98 0 chr15 1946963 1947004 -83748750 + MLT2A2 LTR ERVL 399 443 -10 25 31 0 0 chr15 1947010 1947042 -83748712 + AT_rich Low_complexity Low_complexity 1 32 0 3116 80 15 2 chr15 1947042 1947443 -83748311 - MLT2A2 LTR ERVL -47 406 1 10675 89 12 1 chr15 1947443 1948826 -83746928 - HERVL-A2 LTR ERVL 0 5654 4258 6868 153 15 37 chr15 1948859 1950068 -83745686 - THE1C-int LTR MaLR -2 1578 427 2345 144 98 7 chr15 1950085 1950510 -83745244 - MER4E LTR ERV1 -129 650 217 728 119 8 0 chr15 1950511 1950629 -83745125 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 2175 121 3 0 chr15 1950647 1950945 -83744809 - AluSp SINE Alu -14 299 1 1737 104 0 0 chr15 1950945 1951175 -83744579 - MER4E LTR ERV1 -549 230 1 1393 145 9 13 chr15 1951175 1951403 -83744351 - THE1C-int LTR MaLR -1353 227 1 1580 162 22 114 chr15 1951403 1951760 -83743994 - THE1C LTR MaLR 0 375 59 2714 17 0 0 chr15 1951760 1952057 -83743697 - AluYa5 SINE Alu -14 297 1 1580 162 22 114 chr15 1952057 1952112 -83743642 - THE1C LTR MaLR -316 59 1 42540 60 3 1 chr15 1952147 1958294 -83737460 + L1PA4 LINE L1 1 6155 0 5145 202 19 39 chr15 1958300 1960099 -83735655 - L1PA13 LINE L1 -3816 2981 1204 3583 231 46 25 chr15 1960105 1960954 -83734800 - L1PA13 LINE L1 -5920 867 1 529 197 42 42 chr15 1960964 1961106 -83734648 + LTR49-int LTR ERV1 4036 4177 -2154 493 276 70 30 chr15 1961123 1961322 -83734432 + MLT2F LTR ERVL 385 591 -72 660 125 21 0 chr15 1961337 1961433 -83734321 - AluJ/FLAM SINE Alu -213 99 2 560 271 0 0 chr15 1961450 1961579 -83734175 + FRAM SINE Alu 2 130 -46 1586 208 60 21 chr15 1962305 1962690 -83733064 - MLT1D LTR MaLR -105 400 1 550 226 8 0 chr15 1963482 1963606 -83732148 + L1MA8 LINE L1 6167 6291 0 2049 140 3 0 chr15 1964245 1964531 -83731223 + AluSx SINE Alu 1 287 -25 182 125 0 25 chr15 1964858 1964898 -83730856 + (GA)n Simple_repeat Simple_repeat 2 40 0 699 201 0 0 chr15 1965466 1965716 -83730038 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 3990 136 14 22 chr15 1965744 1965797 -83729957 + MER50 LTR ERV1 83 135 -599 2098 129 0 0 chr15 1965797 1966108 -83729646 + AluSc SINE Alu 1 311 0 3990 136 14 22 chr15 1966108 1966693 -83729061 + MER50 LTR ERV1 135 717 -17 601 203 11 0 chr15 1966696 1966873 -83728881 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr15 1967627 1967647 -83728107 + (TG)n Simple_repeat Simple_repeat 2 21 0 925 233 107 47 chr15 1970717 1971146 -83724608 + MLT1D LTR MaLR 39 493 -12 327 164 0 0 chr15 1971298 1971359 -83724395 + CT-rich Low_complexity Low_complexity 1 61 0 378 314 14 90 chr15 1973871 1974094 -83721660 + MIR SINE MIR 53 258 -4 276 298 38 15 chr15 1974672 1974803 -83720951 + L1ME4a LINE L1 3418 3551 -2595 359 245 84 45 chr15 1975356 1975511 -83720243 + L1ME4a LINE L1 5231 5391 -755 354 347 112 16 chr15 1975497 1975748 -83720006 + L1ME4a LINE L1 5664 5938 -183 * 944 148 223 135 chr15 1976048 1976412 -83719342 - MSTD LTR MaLR 0 396 1 1768 238 82 14 chr15 1977308 1977892 -83717862 + MER67B LTR ERV1 32 655 -6 318 205 0 98 chr15 1982379 1982491 -83713263 + L1MEd LINE L1 968 1068 -5051 336 325 41 33 chr15 1982634 1982905 -83712849 + L1ME3A LINE L1 5684 5956 -214 225 163 116 0 chr15 1983145 1983188 -83712566 + L1P4 LINE L1 5699 5746 -420 260 176 0 66 chr15 1983702 1983884 -83711870 + (ACCTG)n Simple_repeat Simple_repeat 1 170 0 1344 222 50 7 chr15 1987232 1987534 -83708220 + MSTB LTR MaLR 100 414 -12 764 155 0 0 chr15 1987807 1987923 -83707831 - AluSg/x SINE Alu -21 291 176 277 259 52 26 chr15 1987933 1988049 -83707705 - HAL1b LINE L1 -539 809 691 341 238 156 19 chr15 1988108 1988268 -83707486 - L1ME3A LINE L1 -182 5988 5807 833 69 4 7 chr15 1988388 1988517 -83707237 + MER30B DNA MER1_type 4 109 -81 261 57 0 0 chr15 1988638 1988673 -83707081 + (TC)n Simple_repeat Simple_repeat 1 35 0 343 276 61 42 chr15 1988683 1988891 -83706863 + MLT1B LTR MaLR 181 370 -4 809 291 55 30 chr15 1989003 1989401 -83706353 + MLT1B-int LTR MaLR 264 671 -700 419 327 35 51 chr15 1989700 1989957 -83705797 + MLT1B-int LTR MaLR 1238 1490 -245 3930 219 37 9 chr15 1990657 1991954 -83703800 + L1PB4 LINE L1 4814 6152 -4 21 0 0 0 chr15 1991970 1991991 -83703763 + AT_rich Low_complexity Low_complexity 1 21 0 1973 121 7 10 chr15 1992023 1992303 -83703451 + AluSg SINE Alu 1 281 -29 234 81 0 0 chr15 1992303 1992340 -83703414 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1497 257 59 41 chr15 1992352 1993113 -83702641 + L1MD2 LINE L1 5117 5896 -463 1879 310 119 28 chr15 1993115 1994205 -83701549 - L1M4b LINE L1 -5650 1209 21 235 289 55 32 chr15 1994218 1994457 -83701297 - L1M1 LINE L1 -4708 1718 1422 664 240 89 27 chr15 1994832 1995057 -83700697 - LTR52-int LTR ERVL -3297 259 21 1033 250 47 47 chr15 1995108 1995488 -83700266 - LTR52 LTR ERVL -38 383 4 4127 202 52 5 chr15 1995849 1996722 -83699032 - MER49 LTR ERV1 -9 914 1 365 248 128 18 chr15 1996728 1996837 -83698917 - MER89-int LTR ERV1 -1653 5148 5028 24 0 0 0 chr15 1996837 1996861 -83698893 + AT_rich Low_complexity Low_complexity 1 24 0 485 266 146 31 chr15 1998649 1998875 -83696879 - MIR SINE MIR 0 262 11 343 343 86 6 chr15 1998926 1999101 -83696653 + MIR SINE MIR 74 262 0 324 265 183 27 chr15 1999131 1999306 -83696448 - MIR SINE MIR -40 222 30 3200 21 5 3 chr15 2000242 2000616 -83695138 - L1PA4 LINE L1 -5 6150 5776 4446 34 0 0 chr15 2000616 2001140 -83694614 + L1PA4 LINE L1 5275 5798 -357 418 287 28 101 chr15 2001465 2001712 -83694042 - MLT1J LTR MaLR -9 502 274 24 0 0 0 chr15 2002139 2002163 -83693591 + AT_rich Low_complexity Low_complexity 1 24 0 7683 24 7 0 chr15 2002221 2003475 -83692279 + L1PA3 LINE L1 4910 6169 0 22 0 0 0 chr15 2003479 2003501 -83692253 + AT_rich Low_complexity Low_complexity 1 22 0 260 262 99 55 chr15 2005986 2006163 -83689591 - MIR SINE MIR -67 195 16 399 250 167 21 chr15 2006334 2006622 -83689132 + L1ME4a LINE L1 5781 6110 -11 504 204 0 0 chr15 2006797 2006890 -83688864 + LTR55 LTR ERV 1 93 -455 754 257 33 0 chr15 2006917 2007131 -83688623 + LTR55 LTR ERV 235 455 -93 409 352 142 4 chr15 2007594 2007875 -83687879 - L3 LINE CR1 -159 1418 1099 578 188 87 0 chr15 2008957 2009106 -83686648 + Ricksha DNA DNA 9 170 -1084 * 2300 165 44 40 chr15 2009009 2009488 -83686266 - Ricksha DNA DNA -18 3228 2745 1152 167 33 12 chr15 2009488 2009728 -83686026 + L1MA5 LINE L1 6056 6300 0 2300 165 44 40 chr15 2009728 2009744 -83686010 - Ricksha DNA DNA -501 2745 2731 2556 120 69 5 chr15 2011148 2011556 -83684198 - MER57B LTR ERV1 0 434 1 180 274 119 36 chr15 2011733 2011817 -83683937 - L2 LINE L2 0 3272 3182 5525 56 0 9 chr15 2011863 2012556 -83683198 - L1PA7 LINE L1 -1 6153 5467 3266 85 7 12 chr15 2012556 2013108 -83682646 + L1PA7 LINE L1 4936 5483 -689 198 256 0 0 chr15 2013109 2013148 -83682606 - MER5A DNA MER1_type -138 51 13 227 361 45 69 chr15 2013416 2013793 -83681961 - L2 LINE L2 0 3313 2946 * 239 343 56 9 chr15 2013787 2013895 -83681859 - L2 LINE L2 -579 2735 2623 940 151 11 11 chr15 2013927 2014106 -83681648 - Looper DNA T2_type -1376 182 4 361 156 52 0 chr15 2014248 2014325 -83681429 + L1MB5 LINE L1 6028 6108 -66 1063 295 91 15 chr15 2014482 2014889 -83680865 + LTR16C LTR ERVL 37 474 -17 481 326 84 74 chr15 2014947 2015517 -83680237 - L2 LINE L2 -934 2380 1805 739 305 5 0 chr15 2015525 2015715 -83680039 + L2 LINE L2 2885 3075 -238 626 159 26 0 chr15 2015718 2015831 -83679923 + L1MA9 LINE L1 5993 6108 -204 1077 210 0 0 chr15 2015832 2016037 -83679717 + MER2 DNA MER2_type 1 205 -140 387 211 40 0 chr15 2016067 2016143 -83679611 + MER2 DNA MER2_type 264 342 -3 984 123 67 20 chr15 2016147 2016342 -83679412 + L1MA9 LINE L1 6109 6312 0 328 313 78 39 chr15 2016353 2016583 -83679171 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2016584 2016614 -83679140 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2017946 2017987 -83677767 + (TA)n Simple_repeat Simple_repeat 1 43 0 1502 159 3 73 chr15 2018944 2019258 -83676496 - AluJb SINE Alu -20 292 1 254 342 13 0 chr15 2019476 2019555 -83676199 + MER5A DNA MER1_type 110 189 0 1140 270 37 12 chr15 2019779 2020317 -83675437 + L1M3c LINE L1 2155 2977 -4519 715 235 123 58 chr15 2020318 2021007 -83674747 + L1M3c LINE L1 2843 3576 -3989 1032 219 0 0 chr15 2021008 2021218 -83674536 + MER2 DNA MER2_type 1 210 -135 4484 243 49 28 chr15 2021325 2023067 -83672687 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2023068 2023375 -83672379 + AluSc SINE Alu 1 307 -2 7902 185 24 7 chr15 2023379 2024906 -83670848 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 2025582 2025760 -83669994 + MIR3 SINE MIR 2 194 -14 3224 34 0 3 chr15 2028376 2028762 -83666992 + L1PA5 LINE L1 5763 6147 -7 33 0 0 0 chr15 2028765 2028798 -83666956 + AT_rich Low_complexity Low_complexity 1 33 0 1576 165 28 31 chr15 2029033 2029385 -83666369 - L1MA7 LINE L1 0 6291 5941 2390 184 13 4 chr15 2029386 2029849 -83665905 + L1MA7 LINE L1 5436 5902 -389 359 293 88 61 chr15 2030048 2030333 -83665421 - LTR67 LTR ERVL -4 553 250 2242 81 10 10 chr15 2030333 2030640 -83665114 - AluY SINE Alu -4 307 1 359 293 88 61 chr15 2030640 2030795 -83664959 - LTR67 LTR ERVL -307 250 101 405 0 0 0 chr15 2030888 2030933 -83664821 + (CA)n Simple_repeat Simple_repeat 2 46 0 1020 167 44 4 chr15 2032187 2032414 -83663340 + MER33 DNA MER1_type 1 236 -88 831 256 90 50 chr15 2032710 2033011 -83662743 + L2 LINE L2 2995 3307 -6 184 228 51 51 chr15 2033060 2033139 -83662615 - L2 LINE L2 -71 3242 3164 3436 43 11 0 chr15 2034769 2035208 -83660546 - L1PA4 LINE L1 -136 6019 5576 211 298 181 11 chr15 2036334 2036428 -83659326 - L2 LINE L2 -5 3308 3199 451 274 67 0 chr15 2039261 2039396 -83656358 + MLT1J1 LTR MaLR 28 171 -275 2189 122 7 3 chr15 2039560 2039864 -83655890 + AluSx SINE Alu 1 305 -7 461 295 32 26 chr15 2040785 2040975 -83654779 - MLT1I LTR MaLR -218 191 1 22 0 0 0 chr15 2041154 2041176 -83654578 + AT_rich Low_complexity Low_complexity 1 22 0 184 361 0 12 chr15 2041661 2041744 -83654010 - L2 LINE L2 -2 3311 3230 736 301 82 75 chr15 2041787 2042482 -83653272 - L2 LINE L2 -926 2388 1689 664 180 0 0 chr15 2042976 2043104 -83652650 - L1MA4 LINE L1 -10 6290 6163 462 287 54 49 chr15 2043111 2043423 -83652331 - L1MC4a LINE L1 -1879 5929 5613 2263 117 0 0 chr15 2043423 2043723 -83652031 - AluSx SINE Alu -12 300 1 462 287 54 49 chr15 2043723 2043779 -83651975 - L1MC4a LINE L1 -2195 5613 5559 882 97 28 0 chr15 2044490 2044635 -83651119 - L1MA6 LINE L1 0 6300 6152 2301 101 10 0 chr15 2044700 2044998 -83650756 - AluSg SINE Alu -9 301 1 288 53 0 0 chr15 2045717 2045755 -83649999 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 215 0 114 chr15 2046165 2046244 -83649510 - MIR SINE MIR -97 165 96 253 339 170 27 chr15 2047186 2047516 -83648238 + L2 LINE L2 2463 2839 -475 556 321 27 0 chr15 2048207 2048391 -83647363 - MIR SINE MIR -6 256 68 204 211 0 0 chr15 2048528 2048566 -83647188 + (CA)n Simple_repeat Simple_repeat 1 38 0 10714 165 19 0 chr15 2048631 2050759 -83644995 + L1PA13 LINE L1 2006 4188 -2609 1368 129 57 0 chr15 2050741 2050989 -83644765 + L1PA13 LINE L1 4440 4701 -2096 * 677 150 136 7 chr15 2050999 2051139 -83644615 + Tigger1 DNA MER2_type 2259 2416 -2 373 310 32 39 chr15 2051554 2051709 -83644045 + MIR SINE MIR 1 154 -108 23 54 0 0 chr15 2051900 2051937 -83643817 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr15 2052154 2052207 -83643547 + AT_rich Low_complexity Low_complexity 1 53 0 2893 166 11 23 chr15 2052825 2053182 -83642572 - Tigger3b DNA MER2_type -2463 565 216 2329 81 0 0 chr15 2053182 2053477 -83642277 - AluY SINE Alu -16 295 1 2893 166 11 23 chr15 2053477 2053691 -83642063 - Tigger3b DNA MER2_type -2812 216 1 371 262 75 73 chr15 2054796 2055466 -83640288 - HSREP522 Satellite telomeric 0 671 1 765 219 83 91 chr15 2055536 2056092 -83639662 - HSREP522 Satellite telomeric 0 551 1 2153 110 0 31 chr15 2057666 2057985 -83637769 - AluSg SINE Alu -1 309 1 1388 186 144 42 chr15 2058932 2059336 -83636418 + L1P LINE L1 3282 3726 -2420 2302 103 0 0 chr15 2059403 2059695 -83636059 + AluSc SINE Alu 1 292 -17 482 266 146 31 chr15 2065364 2065590 -83630164 - MIR SINE MIR 0 262 11 360 311 16 8 chr15 2065641 2065763 -83629991 + MIR SINE MIR 74 196 -66 309 265 183 27 chr15 2065846 2066021 -83629733 - MIR SINE MIR -40 222 30 189 0 0 0 chr15 2066770 2066791 -83628963 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3206 19 5 0 chr15 2066965 2067340 -83628414 - L1PA4 LINE L1 -3 6152 5776 4195 32 0 0 chr15 2067340 2067864 -83627890 + L1PA4 LINE L1 5275 5798 -357 363 257 41 76 chr15 2068189 2068360 -83627394 - MLT1J LTR MaLR -9 502 338 24 0 0 0 chr15 2068862 2068886 -83626868 + AT_rich Low_complexity Low_complexity 1 24 0 7083 25 6 0 chr15 2068944 2070163 -83625591 + L1PA3 LINE L1 4910 6135 -20 220 67 0 44 chr15 2070174 2070219 -83625535 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 238 271 99 55 chr15 2072701 2072878 -83622876 - MIR SINE MIR -67 195 16 317 225 79 22 chr15 2073047 2073225 -83622529 + L1ME4a LINE L1 5781 5968 -153 461 204 0 0 chr15 2073510 2073603 -83622151 + LTR55 LTR ERV 1 93 -455 671 252 33 0 chr15 2073630 2073844 -83621910 + LTR55 LTR ERV 235 455 -93 433 365 126 3 chr15 2074313 2074598 -83621156 - L3 LINE CR1 -159 1418 1099 2172 165 44 36 chr15 2075679 2076210 -83619544 - Ricksha DNA DNA -18 3233 2750 1104 167 33 12 chr15 2076210 2076450 -83619304 + L1MA5 LINE L1 6056 6300 0 2172 165 44 36 chr15 2076450 2076466 -83619288 - Ricksha DNA DNA -501 2750 2736 2481 123 69 5 chr15 2077877 2078285 -83617469 - MER57B LTR ERV1 0 434 1 5389 59 0 9 chr15 2078592 2079285 -83616469 - L1PA7 LINE L1 -1 6153 5467 3076 82 10 0 chr15 2079285 2079818 -83615936 + L1PA7 LINE L1 4936 5471 -701 326 190 17 0 chr15 2079818 2079876 -83615878 - MER5A DNA MER1_type -118 71 13 245 355 45 71 chr15 2080144 2080522 -83615232 - L2 LINE L2 0 3313 2946 237 343 56 9 chr15 2080516 2080624 -83615130 - L2 LINE L2 -579 2735 2623 * 886 151 11 11 chr15 2080656 2080835 -83614919 - Looper DNA T2_type -1376 182 4 320 156 52 0 chr15 2080977 2081054 -83614700 + L1MB5 LINE L1 6028 6108 -66 906 298 91 15 chr15 2081212 2081618 -83614136 + LTR16C LTR ERVL 38 474 -17 521 332 66 73 chr15 2081676 2082248 -83613506 - L2 LINE L2 -934 2380 1813 744 305 5 0 chr15 2082253 2082443 -83613311 + L2 LINE L2 2885 3075 -238 570 168 26 0 chr15 2082446 2082559 -83613195 + L1MA9 LINE L1 5993 6108 -204 971 219 0 0 chr15 2082560 2082765 -83612989 + MER2 DNA MER2_type 1 205 -140 374 222 14 0 chr15 2082799 2082871 -83612883 + MER2 DNA MER2_type 270 342 -3 961 118 67 20 chr15 2082875 2083070 -83612684 + L1MA9 LINE L1 6109 6312 0 288 317 78 39 chr15 2083081 2083311 -83612443 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2083312 2083342 -83612412 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2084674 2084715 -83611039 + (TA)n Simple_repeat Simple_repeat 1 43 0 1628 159 3 73 chr15 2085672 2085986 -83609768 - AluJb SINE Alu -20 292 1 245 354 13 0 chr15 2086203 2086282 -83609472 + MER5A DNA MER1_type 110 189 0 1067 263 39 12 chr15 2086509 2087043 -83608711 + L1M3c LINE L1 2155 2977 -4519 586 246 114 55 chr15 2087044 2087720 -83608034 + L1M3c LINE L1 2843 3558 -4007 1057 214 0 0 chr15 2087734 2087944 -83607810 + MER2 DNA MER2_type 1 210 -135 4454 242 51 28 chr15 2088049 2089788 -83605966 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2089789 2090096 -83605658 + AluSc SINE Alu 1 307 -2 4683 188 32 9 chr15 2090100 2091022 -83604732 + L1M1 LINE L1 10 953 -6612 1199 252 55 102 chr15 2091156 2091405 -83604349 - L1 LINE L1 -3137 4428 4169 239 171 0 0 chr15 2091405 2091446 -83604308 + U2 snRNA snRNA 1 41 -147 1199 252 55 102 chr15 2091446 2091949 -83603805 - L1 LINE L1 -3396 4169 3673 1180 219 7 7 chr15 2091979 2092249 -83603505 + L1M3e LINE L1 7 276 -6754 422 261 120 42 chr15 2092234 2092297 -83603457 - L1 LINE L1 -4011 3554 3497 * 964 113 6 6 chr15 2092297 2092456 -83603298 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 422 261 120 42 chr15 2092456 2092676 -83603078 - L1 LINE L1 -4068 3497 3249 1920 241 9 9 chr15 2092677 2093255 -83602499 - L1 LINE L1 -4475 3090 2513 1219 217 38 62 chr15 2095334 2095707 -83600047 + MSTD LTR MaLR 33 396 0 1407 273 28 2 chr15 2095710 2096142 -83599612 + MSTD-int LTR MaLR 2 444 -1291 * 1695 241 109 38 chr15 2096138 2096979 -83598775 + MSTD-int LTR MaLR 730 1719 -16 1465 208 46 14 chr15 2096993 2097339 -83598415 + MSTD LTR MaLR 1 357 -39 1018 122 0 0 chr15 2097343 2097491 -83598263 + AluY SINE Alu 146 293 -18 295 85 0 21 chr15 2097493 2097540 -83598214 + MSTD LTR MaLR 350 395 -1 469 106 0 47 chr15 2097542 2097627 -83598127 - L1M2 LINE L1 -822 5469 5389 1565 181 29 39 chr15 2097635 2098043 -83597711 + L1MA7 LINE L1 5867 6270 -21 1117 317 54 38 chr15 2098160 2098899 -83596855 - MER89-int LTR ERV1 -2540 4261 3511 1285 232 23 31 chr15 2100294 2100682 -83595072 - MLT1B LTR MaLR 0 390 6 435 305 21 21 chr15 2101077 2101267 -83594487 + L1MEc LINE L1 390 579 -5817 812 164 10 77 chr15 2101339 2101534 -83594220 - MER4A LTR ERV1 -110 554 373 240 99 380 14 chr15 2101589 2101660 -83594094 - MER4A LTR ERV1 -567 97 1 204 88 59 0 chr15 2103022 2103056 -83592698 + (CCTTG)n Simple_repeat Simple_repeat 4 39 0 1564 151 27 81 chr15 2103078 2103522 -83592232 + HSREP522 Satellite telomeric 3 422 -82 964 202 5 0 chr15 2103541 2103744 -83592010 - L1 LINE L1 -1998 4148 3945 619 175 8 42 chr15 2103775 2103895 -83591859 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr15 2103948 2103969 -83591785 + AT_rich Low_complexity Low_complexity 1 21 0 5687 138 15 17 chr15 2103969 2105058 -83590696 + L1MA5A LINE L1 5174 6264 -33 21 0 0 0 chr15 2105072 2105093 -83590661 + AT_rich Low_complexity Low_complexity 1 21 0 2476 144 51 90 chr15 2105803 2106426 -83589328 - L1MB2 LINE L1 -1 6170 5572 22 0 0 0 chr15 2106494 2106516 -83589238 + AT_rich Low_complexity Low_complexity 1 22 0 2407 73 0 22 chr15 2106651 2106965 -83588789 - AluY SINE Alu -4 307 1 276 30 0 0 chr15 2107240 2107273 -83588481 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 240 0 0 chr15 2108674 2108724 -83587030 + MER3 DNA MER1_type 41 90 -119 * 740 173 123 17 chr15 2108692 2108871 -83586883 - MER3 DNA MER1_type -11 198 1 705 152 3 43 chr15 2109316 2109517 -83586237 - L1MB8 LINE L1 -2 6182 5989 807 188 0 6 chr15 2109537 2109702 -83586052 - L1MB8 LINE L1 -170 6008 5845 278 310 9 0 chr15 2110537 2110650 -83585104 + (TG)n Simple_repeat Simple_repeat 2 115 0 1639 151 14 92 chr15 2112361 2112732 -83583022 + MER2 DNA MER2_type 3 344 0 387 0 0 0 chr15 2113157 2113200 -83582554 + (CA)n Simple_repeat Simple_repeat 1 43 0 194 114 0 23 chr15 2113203 2113247 -83582507 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 247 204 0 19 chr15 2114220 2114274 -83581480 + L2 LINE L2 3217 3269 -3 600 314 64 13 chr15 2114859 2115095 -83580659 + L2 LINE L2 2729 2976 -338 842 149 32 0 chr15 2115100 2115254 -83580500 - L1MB1 LINE L1 -1 6167 6009 1959 120 11 0 chr15 2117011 2117277 -83578477 - AluSx SINE Alu -43 269 1 26 0 0 0 chr15 2120072 2120098 -83575656 + AT_rich Low_complexity Low_complexity 1 26 0 213 226 113 47 chr15 2120428 2120534 -83575220 + MIR SINE MIR 100 212 -50 340 310 129 19 chr15 2120749 2120904 -83574850 + MIR3 SINE MIR 13 184 -24 2283 123 0 0 chr15 2121741 2122051 -83573703 + AluSq SINE Alu 1 310 -3 278 26 26 0 chr15 2122806 2122845 -83572909 + (TA)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr15 2123690 2123726 -83572028 + AT_rich Low_complexity Low_complexity 1 36 0 792 159 15 0 chr15 2123726 2123858 -83571896 + AluJb SINE Alu 1 134 -178 1581 178 59 0 chr15 2123859 2124146 -83571608 + AluJo SINE Alu 1 304 -8 262 318 0 0 chr15 2124337 2124425 -83571329 + MIR SINE MIR 175 262 0 2360 83 0 7 chr15 2124506 2124807 -83570947 - AluY SINE Alu -12 299 1 286 260 57 24 chr15 2124844 2124967 -83570787 - L1ME4a LINE L1 -51 6070 5944 1969 119 3 31 chr15 2125134 2125420 -83570334 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 2125421 2125441 -83570313 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 676 251 16 43 chr15 2125451 2125706 -83570048 + L1MEd LINE L1 1010 1257 -4862 884 122 0 7 chr15 2126717 2126856 -83568898 - AluSg/x SINE Alu -2 310 173 2720 157 38 4 chr15 2126856 2127352 -83568402 - L1MA4 LINE L1 -290 6010 5498 2148 129 0 3 chr15 2128621 2128931 -83566823 + AluSx SINE Alu 1 309 -3 1480 245 60 8 chr15 2129605 2129881 -83565873 - L1ME4a LINE L1 -465 5701 5441 2176 91 0 3 chr15 2129881 2130166 -83565588 - AluSx SINE Alu -24 288 5 1480 245 60 8 chr15 2130166 2130420 -83565334 - L1ME4a LINE L1 -725 5441 5143 2120 110 0 0 chr15 2130665 2130946 -83564808 + AluSg SINE Alu 7 287 -23 24 0 0 0 chr15 2130949 2130973 -83564781 + AT_rich Low_complexity Low_complexity 1 24 0 2193 95 3 0 chr15 2131185 2131491 -83564263 + AluSx SINE Alu 1 307 0 1952 139 0 29 chr15 2132026 2132342 -83563412 + AluSx SINE Alu 3 309 -3 2170 108 7 0 chr15 2133028 2133315 -83562439 + AluSx SINE Alu 1 289 -23 672 121 0 10 chr15 2133705 2133804 -83561950 - MER4A LTR ERV1 -566 98 1 1006 121 79 11 chr15 2133804 2133994 -83561760 + L1MA3 LINE L1 5705 5907 -398 * 2704 189 86 13 chr15 2133992 2134669 -83561085 - L1 LINE L1 -1446 4700 3975 * 6849 121 28 20 chr15 2134661 2136148 -83559606 - L1PA3 LINE L1 -2 6153 4678 2158 103 0 19 chr15 2136148 2136458 -83559296 - AluSx SINE Alu 0 312 9 6849 121 28 20 chr15 2136458 2136676 -83559078 - L1PA3 LINE L1 -1477 4678 3052 2048 127 6 9 chr15 2136676 2137008 -83558746 - L1PB2 LINE L1 0 7570 7240 3023 198 25 27 chr15 2137008 2137971 -83557783 - L1PB2 LINE L1 -622 6948 5996 3187 214 32 10 chr15 2137992 2138905 -83556849 - L1PB2 LINE L1 -3114 4451 3509 677 209 103 169 chr15 2138908 2139239 -83556515 - LTR28 LTR ERV1 -676 344 1 7704 225 42 8 chr15 2139240 2140864 -83554890 - L1M1 LINE L1 -5870 1695 17 382 185 2 7 chr15 2142463 2142547 -83553207 - L1MA4 LINE L1 -175 6129 6049 620 238 33 0 chr15 2142566 2142717 -83553037 + FRAM SINE Alu 1 156 -20 1573 215 3 0 chr15 2142719 2143021 -83552733 + AluJo SINE Alu 1 303 -9 273 194 16 23 chr15 2143143 2143229 -83552525 + L1MB5 LINE L1 5838 5932 -238 1793 138 25 14 chr15 2143268 2143550 -83552204 + AluSx SINE Alu 3 287 -25 2783 257 90 48 chr15 2143871 2146360 -83549394 - L1M4 LINE L1 -3591 3053 455 263 189 116 11 chr15 2146357 2146452 -83549302 - L1M4 LINE L1 -3081 3065 2961 * 1249 243 14 7 chr15 2146452 2146740 -83549014 - AluJb SINE Alu -22 290 1 334 203 40 124 chr15 2146831 2147033 -83548721 + MER53 DNA DNA 5 189 0 985 258 0 14 chr15 2147758 2147979 -83547775 - AluJo SINE Alu -82 230 13 365 304 5 77 chr15 2148414 2148608 -83547146 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 2150520 2150557 -83545197 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr15 2151346 2151385 -83544369 + AT_rich Low_complexity Low_complexity 1 39 0 3699 211 57 27 chr15 2152913 2154816 -83540938 - L1MA8 LINE L1 -3 6288 4326 5133 136 66 7 chr15 2154838 2155789 -83539965 - L1MA2 LINE L1 0 6304 5298 613 256 175 6 chr15 2156381 2156741 -83539013 + L1MB2 LINE L1 1071 1491 -4822 544 283 103 32 chr15 2156778 2157210 -83538544 + L1MB2 LINE L1 1363 2223 -4160 506 222 101 50 chr15 2157374 2157811 -83537943 + L1MB2 LINE L1 2137 2611 -3771 328 250 158 12 chr15 2158058 2158298 -83537456 + L1MB2 LINE L1 2837 3111 -3271 887 281 30 9 chr15 2158315 2158646 -83537108 + L1MB2 LINE L1 4757 5094 -1288 482 253 166 4 chr15 2158635 2158864 -83536890 + L1MB2 LINE L1 5909 6174 -233 * 2180 94 10 7 chr15 2158890 2159187 -83536567 + AluSx SINE Alu 1 298 -14 989 282 64 88 chr15 2160071 2160695 -83535059 + L1M3 LINE L1 2 610 -5345 3167 236 74 46 chr15 2160738 2161345 -83534409 + L1M3 LINE L1 3978 4566 -1490 2322 96 0 7 chr15 2161345 2161638 -83534116 - AluSg SINE Alu -16 294 4 3167 236 74 46 chr15 2161638 2162374 -83533380 + L1M3 LINE L1 4566 5367 -689 398 183 0 0 chr15 2162383 2162454 -83533300 + L1PB4 LINE L1 6045 6115 -41 2113 87 18 0 chr15 2163061 2163399 -83532355 - AluSc SINE Alu 0 343 1 402 294 114 92 chr15 2164293 2165127 -83530627 + L1M4 LINE L1 445 1296 -5553 1421 181 42 19 chr15 2167140 2167270 -83528484 - L1MA9 LINE L1 -387 5925 5799 261 0 0 0 chr15 2167270 2167299 -83528455 + (TG)n Simple_repeat Simple_repeat 2 30 0 1421 181 42 19 chr15 2167299 2167478 -83528276 - L1MA9 LINE L1 -513 5799 5609 1372 185 39 4 chr15 2167472 2167753 -83528001 + L1MA9 LINE L1 5972 6262 -50 * 316 187 22 112 chr15 2168005 2168139 -83527615 - L1MEc LINE L1 -4258 2138 2017 1656 112 29 105 chr15 2168140 2168481 -83527273 - AluYb8 SINE Alu 0 317 1 432 0 0 0 chr15 2169661 2169709 -83526045 + (CA)n Simple_repeat Simple_repeat 1 48 0 2117 119 7 10 chr15 2169888 2170190 -83525564 + AluSx SINE Alu 1 301 -11 331 138 231 0 chr15 2172319 2172384 -83523370 - MADE1 DNA Mariner 0 80 1 1075 274 18 26 chr15 2173695 2173927 -83521827 + L1M4 LINE L1 3355 3587 -3261 3008 102 13 11 chr15 2173927 2174389 -83521365 - L1PA10 LINE L1 0 6168 5706 1075 274 18 26 chr15 2174389 2174770 -83520984 + L1M4 LINE L1 3587 3963 -2885 348 125 0 0 chr15 2175002 2175066 -83520688 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2019 82 50 4 chr15 2175066 2175345 -83520409 - AluY SINE Alu -19 292 1 1834 164 3 3 chr15 2178215 2178508 -83517246 - AluSg1 SINE Alu -15 294 2 2056 125 4 4 chr15 2178684 2178999 -83516755 + AluSg SINE Alu 1 315 0 2509 117 13 8 chr15 2180193 2180586 -83515168 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 2180908 2181093 -83514661 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 2181195 2181443 -83514311 - MIR SINE MIR -1 261 4 318 26 0 0 chr15 2182637 2182658 -83513096 + (TG)n Simple_repeat Simple_repeat 1 60 0 318 26 0 0 chr15 2182658 2182697 -83513057 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 367 36 36 chr15 2183197 2183336 -83512418 - MER5B DNA MER1_type 0 178 40 710 186 0 0 chr15 2183341 2183459 -83512295 + FLAM_A SINE Alu 1 118 -15 1073 207 161 8 chr15 2183633 2183894 -83511860 - AluJb SINE Alu -1 301 1 340 293 101 22 chr15 2185643 2185853 -83509901 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 2187742 2187848 -83507906 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 2188544 2188695 -83507059 - MIR SINE MIR -47 215 57 3128 163 8 9 chr15 2189077 2189605 -83506149 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr15 2189833 2189885 -83505869 - MER91B DNA MER1_type -60 130 79 534 277 188 15 chr15 2190866 2191260 -83504494 - MLT1L LTR MaLR -153 462 1 181 296 56 28 chr15 2191266 2191337 -83504417 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 2191342 2191556 -83504198 - MER58A DNA MER1_type -3 221 8 2066 153 7 0 chr15 2193337 2193644 -83502110 + AluSc SINE Alu 1 309 0 1364 195 136 49 chr15 2193747 2194236 -83501518 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 2194730 2194779 -83500975 + AT_rich Low_complexity Low_complexity 1 49 0 52 50 0 0 chr15 2195823 2195903 -83499851 + AT_rich Low_complexity Low_complexity 1 80 0 1597 166 7 7 chr15 2197480 2197769 -83497985 - L1PA15 LINE L1 -1 6164 5876 635 214 1 39 chr15 2197870 2198088 -83497666 - L1M4 LINE L1 -2598 3548 3344 710 181 167 9 chr15 2198090 2198300 -83497454 - MSTA LTR MaLR 0 428 186 306 147 0 0 chr15 2198300 2198368 -83497386 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 2136 110 10 3 chr15 2198370 2198679 -83497075 - AluY SINE Alu 0 311 1 378 100 71 14 chr15 2198681 2198751 -83497003 - MSTA LTR MaLR -231 197 124 205 264 22 22 chr15 2198882 2198973 -83496781 + (TA)n Simple_repeat Simple_repeat 1 91 0 370 185 0 0 chr15 2199459 2199524 -83496230 - MER58A DNA MER1_type 0 224 160 941 167 25 19 chr15 2199528 2199690 -83496064 - AluJb SINE Alu -18 294 132 444 224 10 10 chr15 2199703 2199801 -83495953 - MER58A DNA MER1_type -9 98 1 25 65 0 0 chr15 2200250 2200296 -83495458 + AT_rich Low_complexity Low_complexity 1 46 0 2501 289 133 17 chr15 2200401 2200779 -83494975 + L2 LINE L2 1777 2110 -1203 1996 156 0 0 chr15 2200779 2201080 -83494674 - AluSx SINE Alu -11 301 1 2501 289 133 17 chr15 2201080 2201836 -83493918 + L2 LINE L2 2110 3040 -273 452 261 142 54 chr15 2202117 2202377 -83493377 + L2 LINE L2 3031 3313 0 21 0 0 0 chr15 2202510 2202531 -83493223 + AT_rich Low_complexity Low_complexity 1 21 0 1940 149 3 0 chr15 2202637 2202932 -83492822 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 2202937 2202959 -83492795 + AT_rich Low_complexity Low_complexity 1 22 0 1485 147 72 33 chr15 2203843 2204163 -83491591 + THE1C LTR MaLR 5 340 -35 507 73 0 0 chr15 2204163 2204231 -83491523 + (TA)n Simple_repeat Simple_repeat 1 68 0 1485 147 72 33 chr15 2204231 2204243 -83491511 + THE1C LTR MaLR 340 350 -25 3294 216 45 10 chr15 2204243 2204856 -83490898 - L1P5 LINE L1 -388 5766 5176 315 0 0 0 chr15 2204856 2204891 -83490863 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3294 216 45 10 chr15 2204891 2205832 -83489922 - L1P5 LINE L1 -978 5176 4125 3098 147 29 10 chr15 2206072 2206583 -83489171 + MER1A DNA MER1_type 1 521 -8 243 0 0 0 chr15 2207811 2207838 -83487916 + (TG)n Simple_repeat Simple_repeat 2 28 0 857 192 0 0 chr15 2207843 2207989 -83487765 - AluSg/x SINE Alu -31 279 134 1668 179 0 0 chr15 2209170 2209450 -83486304 + L1PA12 LINE L1 637 916 -6665 893 101 0 7 chr15 2209455 2209594 -83486160 + L1PA12 LINE L1 1616 1753 -5828 297 270 71 73 chr15 2209989 2210679 -83485075 + HSREP522 Satellite telomeric 1 688 -14 279 167 0 0 chr15 2211114 2211162 -83484592 - L1PA12 LINE L1 -6273 1308 1261 4165 236 56 34 chr15 2211182 2213635 -83482119 + L1PA13 LINE L1 482 3042 -3755 2490 87 0 0 chr15 2213644 2213955 -83481799 + AluY SINE Alu 1 311 0 1268 227 39 20 chr15 2214047 2214528 -83481226 + MER4-int LTR ERV1 109 641 -5957 981 276 0 0 chr15 2214642 2214896 -83480858 + AluY SINE Alu 58 311 0 2092 155 77 14 chr15 2214934 2215480 -83480274 + MER4-int LTR ERV1 29 652 -5946 669 159 82 159 chr15 2215507 2215871 -83479883 + MER4-int LTR ERV1 762 1097 -5501 6092 86 6 0 chr15 2215879 2216951 -83478803 - L1PA7 LINE L1 -1 6153 5051 3066 119 8 4 chr15 2216977 2217490 -83478264 + L1P LINE L1 4555 5069 -1077 279 0 0 0 chr15 2218290 2218321 -83477433 + (T)n Simple_repeat Simple_repeat 1 31 0 2073 146 0 3 chr15 2218321 2218684 -83477070 - L1P LINE L1 -3825 2321 1960 1352 234 3 17 chr15 2218854 2219153 -83476601 - AluJo SINE Alu -16 296 2 1225 196 30 9 chr15 2220113 2220578 -83475176 + L1P4 LINE L1 5027 5496 -670 26 0 0 0 chr15 2220578 2220604 -83475150 + AT_rich Low_complexity Low_complexity 1 26 0 2157 113 0 10 chr15 2220724 2221024 -83474730 + AluSg SINE Alu 1 297 -13 1008 285 87 63 chr15 2221105 2222922 -83472832 - L1MCc LINE L1 -4326 2796 727 251 345 53 35 chr15 2222960 2223131 -83472623 - L1MCc LINE L1 -5601 822 649 209 273 160 13 chr15 2224143 2224293 -83471461 - MIR SINE MIR 0 262 91 371 62 0 75 chr15 2224511 2224591 -83471163 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1581 189 3 25 chr15 2224594 2224911 -83470843 - AluJb SINE Alu -2 310 1 2320 196 37 4 chr15 2226337 2226856 -83468898 - L1MB3 LINE L1 -2 6181 5646 840 225 171 52 chr15 2227445 2227925 -83467829 + L1M4 LINE L1 4399 4935 -1211 396 0 0 0 chr15 2227936 2227980 -83467774 + (TG)n Simple_repeat Simple_repeat 1 44 0 321 309 47 0 chr15 2228024 2228173 -83467581 + L1MA10 LINE L1 6169 6324 -10 576 278 87 20 chr15 2228411 2228663 -83467091 + LTR37B LTR ERV1 198 466 -2 309 298 24 0 chr15 2229961 2230129 -83465625 + (CA)n Simple_repeat Simple_repeat 2 173 0 243 270 19 13 chr15 2230171 2230330 -83465424 + (CA)n Simple_repeat Simple_repeat 2 161 0 282 238 49 12 chr15 2230348 2230512 -83465242 + (CA)n Simple_repeat Simple_repeat 2 171 0 2200 88 0 3 chr15 2230640 2230936 -83464818 - AluY SINE Alu -16 295 1 3205 50 0 4 chr15 2232113 2232571 -83463183 + L1P2 LINE L1 4984 5438 -716 6754 149 18 13 chr15 2234057 2235651 -83460103 - L1MA1 LINE L1 -9 6293 4687 2221 125 3 0 chr15 2235798 2236110 -83459644 + AluSq SINE Alu 1 313 0 1198 219 72 81 chr15 2236418 2236948 -83458806 - L1ME2 LINE L1 -1 6163 5639 318 0 0 0 chr15 2238190 2238229 -83457525 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr15 2238229 2238256 -83457498 + AT_rich Low_complexity Low_complexity 1 27 0 2031 194 61 28 chr15 2238784 2239289 -83456465 - L1MA7 LINE L1 -1 6290 5769 2493 211 60 28 chr15 2239293 2239941 -83455813 - L1MB8 LINE L1 -2 6176 5508 * 4368 193 40 18 chr15 2239935 2241453 -83454301 - L1MA7 LINE L1 -510 5781 4230 21 0 0 0 chr15 2242765 2242786 -83452968 + AT_rich Low_complexity Low_complexity 1 21 0 333 140 0 0 chr15 2243913 2243970 -83451784 + (A)n Simple_repeat Simple_repeat 1 57 0 33 73 0 0 chr15 2244677 2244745 -83451009 + AT_rich Low_complexity Low_complexity 1 68 0 464 230 0 9 chr15 2244745 2244858 -83450896 - L1MA7 LINE L1 -1904 4242 4131 354 278 147 17 chr15 2248549 2248688 -83447066 - MIR SINE MIR -63 145 34 184 158 26 0 chr15 2248713 2248751 -83447003 + MIR SINE MIR 102 140 -122 273 167 0 0 chr15 2249631 2249685 -83446069 + (CA)n Simple_repeat Simple_repeat 2 55 0 401 249 35 47 chr15 2250401 2250570 -83445184 + MLT1L LTR MaLR 422 588 -27 278 177 203 0 chr15 2250717 2250796 -83444958 + MIR SINE MIR 71 165 -97 1381 220 11 11 chr15 2251197 2251474 -83444280 - AluJb SINE Alu -35 277 1 25 31 0 0 chr15 2251554 2251586 -83444168 + AT_rich Low_complexity Low_complexity 1 32 0 1774 159 120 26 chr15 2252173 2252564 -83443190 + MSTA LTR MaLR 1 428 0 736 195 0 8 chr15 2252892 2253020 -83442734 + AluJb SINE Alu 6 132 -180 572 231 88 6 chr15 2253052 2253232 -83442522 + FAM SINE Alu 1 59 0 216 0 0 0 chr15 2253847 2253871 -83441883 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1017 199 5 0 chr15 2253989 2254175 -83441579 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr15 2254948 2254970 -83440784 + AT_rich Low_complexity Low_complexity 1 22 0 511 281 88 38 chr15 2255089 2255312 -83440442 + L1ME4a LINE L1 5535 5780 -341 1713 174 7 3 chr15 2255312 2255599 -83440155 - AluSx SINE Alu -23 289 2 511 281 88 38 chr15 2255599 2255695 -83440059 + L1ME4a LINE L1 5780 5870 -251 196 309 31 62 chr15 2255775 2255937 -83439817 + MIR SINE MIR 105 261 -1 183 114 0 0 chr15 2255966 2256001 -83439753 + (CA)n Simple_repeat Simple_repeat 1 35 0 331 252 18 72 chr15 2256047 2256158 -83439596 + L1ME4a LINE L1 6014 6118 -3 1624 201 10 16 chr15 2256200 2256513 -83439241 + AluJo SINE Alu 1 311 -1 2302 128 103 140 chr15 2256555 2257148 -83438606 - LTR4 LTR ERV1 0 596 26 207 167 0 0 chr15 2258274 2258316 -83437438 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 652 236 62 0 chr15 2258409 2258570 -83437184 + MIR SINE MIR 20 190 -72 460 210 63 42 chr15 2259106 2259249 -83436505 + MLT1D LTR MaLR 48 193 -312 1201 181 4 69 chr15 2259251 2259527 -83436227 + AluJb SINE Alu 5 262 -50 1350 239 52 49 chr15 2263478 2264010 -83431744 + MER67C LTR ERV1 22 514 0 23 33 0 0 chr15 2264286 2264316 -83431438 + AT_rich Low_complexity Low_complexity 1 30 0 223 327 47 0 chr15 2264455 2264562 -83431192 - MIR SINE MIR -71 191 80 524 289 39 55 chr15 2264710 2265137 -83430617 + L1M3e LINE L1 466 1675 -4890 8133 234 43 33 chr15 2265375 2268225 -83427529 + L1M3e LINE L1 2007 4903 -2662 1586 184 6 32 chr15 2268225 2268540 -83427214 + AluJo SINE Alu 6 312 0 8133 234 43 33 chr15 2268540 2269690 -83426064 + L1M3e LINE L1 4903 6041 -1524 24 32 0 0 chr15 2270212 2270243 -83425511 + GC_rich Low_complexity Low_complexity 1 31 0 405 294 17 6 chr15 2271989 2272166 -83423588 + (CA)n Simple_repeat Simple_repeat 1 179 0 257 315 9 0 chr15 2272200 2272311 -83423443 + (CA)n Simple_repeat Simple_repeat 1 112 0 1054 169 15 0 chr15 2273321 2273516 -83422238 + MER49 LTR ERV1 715 912 -11 22 56 0 0 chr15 2275102 2275138 -83420616 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr15 2276647 2276677 -83419077 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr15 2276700 2276752 -83419002 + AT_rich Low_complexity Low_complexity 1 52 0 2137 125 10 0 chr15 2276916 2277221 -83418533 - AluSp SINE Alu -3 310 3 653 318 52 16 chr15 2277444 2277828 -83417926 - L1MEc LINE L1 -3568 2647 2250 277 233 161 52 chr15 2277925 2278118 -83417636 - L1MEc LINE L1 -4282 2114 1901 320 301 82 68 chr15 2278154 2278300 -83417454 - L1MEc LINE L1 -4590 1806 1655 4778 17 6 0 chr15 2278300 2278817 -83416937 + L1PA3 LINE L1 5636 6155 0 320 301 82 68 chr15 2278817 2278889 -83416865 - L1MEc LINE L1 -4741 1655 1585 242 355 73 32 chr15 2279215 2279339 -83416415 - MIR SINE MIR -57 151 23 265 313 57 17 chr15 2280393 2280569 -83415185 + HERV16 LTR ERVL 2781 2963 -2033 1015 65 0 0 chr15 2284603 2284726 -83411028 + AluY SINE Alu 1 123 -188 22 35 0 0 chr15 2284726 2284755 -83410999 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 2284920 2284983 -83410771 + AT_rich Low_complexity Low_complexity 1 63 0 312 129 86 43 chr15 2287110 2287180 -83408574 + AluJ/FRAM SINE Alu 229 301 -1 2095 124 0 3 chr15 2287188 2287487 -83408267 + AluSp SINE Alu 1 298 -15 1583 168 37 17 chr15 2287797 2288094 -83407660 - AluJb SINE Alu -9 303 1 248 293 217 0 chr15 2288148 2288182 -83407572 + MIR SINE MIR 2 27 -235 204 67 0 0 chr15 2288182 2288212 -83407542 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 248 293 217 0 chr15 2288212 2288334 -83407420 + MIR SINE MIR 27 192 -70 1761 101 0 0 chr15 2288362 2288600 -83407154 - AluSg/x SINE Alu -7 305 68 325 276 74 37 chr15 2288807 2288970 -83406784 - L1M4 LINE L1 -938 5208 5040 27 49 0 0 chr15 2288970 2289011 -83406743 + AT_rich Low_complexity Low_complexity 1 41 0 186 308 30 77 chr15 2289037 2289206 -83406548 - L2 LINE L2 -203 3069 2909 491 264 60 53 chr15 2289212 2289496 -83406258 - L1M4 LINE L1 -1091 5055 4770 21 95 0 0 chr15 2289642 2289705 -83406049 + AT_rich Low_complexity Low_complexity 1 63 0 987 114 29 105 chr15 2289852 2289959 -83405795 + L1PA16 LINE L1 5932 6017 -149 1693 173 0 3 chr15 2289959 2290248 -83405506 + AluJb SINE Alu 1 288 -24 987 114 29 105 chr15 2290248 2290350 -83405404 + L1PA16 LINE L1 6017 6125 -41 910 213 0 0 chr15 2290506 2290706 -83405048 + AluSg/x SINE Alu 116 315 0 1192 134 18 0 chr15 2290941 2291112 -83404642 + AluSq SINE Alu 1 174 -139 201 216 39 0 chr15 2291930 2291981 -83403773 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr15 2292018 2292039 -83403715 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 2292842 2292866 -83402888 + AT_rich Low_complexity Low_complexity 1 24 0 236 71 71 0 chr15 2293251 2293307 -83402447 + GA-rich Low_complexity Low_complexity 2 61 0 2338 155 62 56 chr15 2293314 2293816 -83401938 - LTR9 LTR ERV1 -107 505 1 1822 178 0 7 chr15 2293877 2294175 -83401579 + AluJo SINE Alu 1 296 -16 2032 118 14 3 chr15 2296514 2296802 -83398952 + AluSg SINE Alu 1 291 -19 8212 103 32 15 chr15 2296838 2297615 -83398139 - HSMAR1 DNA Mariner 0 1287 483 2217 124 0 0 chr15 2297615 2297922 -83397832 + AluSx SINE Alu 1 307 -5 8212 103 32 15 chr15 2297922 2298315 -83397439 - HSMAR1 DNA Mariner -804 483 98 200 156 44 0 chr15 2298442 2298487 -83397267 + (CA)n Simple_repeat Simple_repeat 2 48 0 1986 148 10 7 chr15 2298839 2299137 -83396617 + AluSx SINE Alu 1 299 -13 417 175 92 25 chr15 2299143 2299263 -83396491 - L1ME4a LINE L1 -2 6119 5992 186 103 0 0 chr15 2299599 2299628 -83396126 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3061 50 0 2 chr15 2299646 2299678 -83396076 + L1P2 LINE L1 5111 5142 -1013 4762 26 4 9 chr15 2299678 2300216 -83395538 - L1PA4 LINE L1 -5 6150 5616 3061 50 0 2 chr15 2300216 2300689 -83395065 + L1PA4 LINE L1 5142 5609 -546 291 345 73 9 chr15 2300892 2301002 -83394752 - L2 LINE L2 -3 3269 3153 2279 95 0 3 chr15 2301211 2301515 -83394239 - AluY SINE Alu -8 303 1 2102 129 0 3 chr15 2304100 2304402 -83391352 - AluSx SINE Alu -11 301 1 192 273 132 74 chr15 2304516 2304637 -83391117 - MIR SINE MIR -58 150 23 263 300 36 36 chr15 2305391 2305501 -83390253 + L2 LINE L2 3204 3313 0 382 261 120 20 chr15 2305811 2305997 -83389757 + MIR3 SINE MIR 3 206 -2 294 392 0 0 chr15 2306614 2306716 -83389038 + MIR SINE MIR 48 149 -59 356 258 17 17 chr15 2307240 2307360 -83388394 - MER112 DNA MER1_type -103 157 38 832 154 24 0 chr15 2307382 2307505 -83388249 - FLAM_C SINE Alu -17 126 1 909 89 0 16 chr15 2307940 2308063 -83387691 - AluSg/x SINE Alu -24 288 168 2145 121 0 0 chr15 2308440 2308729 -83387025 - AluSx SINE Alu -23 289 1 1646 205 10 0 chr15 2309185 2309478 -83386276 - AluJo SINE Alu -16 296 1 2355 89 3 3 chr15 2309791 2310094 -83385660 - AluSq SINE Alu -10 303 1 965 179 151 114 chr15 2310640 2310992 -83384762 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 2312528 2312549 -83383205 + AT_rich Low_complexity Low_complexity 1 21 0 396 186 15 7 chr15 2314283 2314378 -83381376 + L1M3 LINE L1 5683 5780 -382 27 29 0 0 chr15 2314647 2314681 -83381073 + AT_rich Low_complexity Low_complexity 1 34 0 278 259 0 12 chr15 2314816 2314897 -83380857 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 380 301 75 63 chr15 2315042 2315441 -83380313 + L1M4 LINE L1 2110 2513 -3633 1979 182 106 40 chr15 2315797 2316270 -83379484 + MLT1D LTR MaLR 1 504 -1 762 168 59 0 chr15 2316914 2317033 -83378721 - AluJb SINE Alu -185 127 2 824 210 80 34 chr15 2317233 2317264 -83378490 + L1ME3A LINE L1 5889 5917 -253 831 103 0 0 chr15 2317264 2317371 -83378383 - U6 snRNA snRNA 0 107 1 824 210 80 34 chr15 2317371 2317601 -83378153 + L1ME3A LINE L1 5917 6162 -8 271 178 55 27 chr15 2317762 2317835 -83377919 - L1ME3A LINE L1 -3 6167 6093 200 344 49 5 chr15 2317921 2318050 -83377704 + MIR SINE MIR 20 151 -67 382 221 43 80 chr15 2318243 2318406 -83377348 - MIR SINE MIR -16 246 90 1503 186 62 0 chr15 2318441 2318716 -83377038 - AluJb SINE Alu -20 292 1 665 211 54 92 chr15 2319203 2319463 -83376291 - L1ME1 LINE L1 -32 6134 5885 422 225 0 22 chr15 2319463 2319552 -83376202 - AluJo SINE Alu -176 136 50 974 175 55 23 chr15 2319556 2319773 -83375981 - L1ME1 LINE L1 -260 5906 5683 1735 156 43 0 chr15 2320159 2320441 -83375313 - AluJb SINE Alu -14 298 5 7560 259 70 26 chr15 2320454 2324477 -83371277 + L1ME LINE L1 1046 5208 -1007 1344 126 0 42 chr15 2324484 2324699 -83371055 + AluSc SINE Alu 1 206 -103 629 190 20 99 chr15 2324799 2324886 -83370868 + L1ME LINE L1 5298 5390 -846 1734 121 16 72 chr15 2324886 2325193 -83370561 - AluSx SINE Alu -18 294 5 629 190 20 99 chr15 2325193 2325316 -83370438 + L1ME LINE L1 5390 5493 -743 191 331 107 38 chr15 2325327 2325590 -83370164 - L2 LINE L2 -665 2649 2369 387 271 33 46 chr15 2325641 2325881 -83369873 - L1MC5 LINE L1 -179 7782 7546 1080 237 67 3 chr15 2327047 2327347 -83368407 + L1MD2 LINE L1 5904 6222 -137 22 0 0 0 chr15 2327564 2327586 -83368168 + AT_rich Low_complexity Low_complexity 1 22 0 499 125 20 0 chr15 2327954 2328046 -83367708 - L1MD1 LINE L1 0 7995 6146 7552 29 8 0 chr15 2328355 2329729 -83366025 - L1PA4 LINE L1 -1 6154 4776 239 186 0 17 chr15 2330914 2330973 -83364781 + CT-rich Low_complexity Low_complexity 5 62 0 22 0 0 0 chr15 2331841 2331863 -83363891 + AT_rich Low_complexity Low_complexity 1 22 0 2037 150 0 3 chr15 2331914 2332227 -83363527 - AluSx SINE Alu 0 312 1 2362 79 0 0 chr15 2333820 2334123 -83361631 - AluY SINE Alu -8 303 1 301 294 32 54 chr15 2334537 2334758 -83360996 + L1ME LINE L1 5616 5831 -359 301 335 152 6 chr15 2334983 2335147 -83360607 - MIR3 SINE MIR -7 201 14 1438 81 5 0 chr15 2335536 2335721 -83360033 + AluSp SINE Alu 1 186 -127 21 0 0 0 chr15 2335891 2335912 -83359842 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr15 2336074 2336116 -83359638 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4647 70 22 31 chr15 2336154 2336591 -83359163 + PABL_B LTR ERV1 1 432 -235 2395 80 3 0 chr15 2336591 2336891 -83358863 + AluSp SINE Alu 1 301 -12 4647 70 22 31 chr15 2336891 2337098 -83358656 + PABL_B LTR ERV1 432 639 -28 326 336 76 72 chr15 2337290 2337805 -83357949 - LTR33A LTR ERVL -4 519 3 355 272 26 0 chr15 2337862 2337950 -83357804 - MIR3 SINE MIR -45 163 73 231 323 0 16 chr15 2338054 2338116 -83357638 + L2 LINE L2 3204 3264 -8 330 182 0 0 chr15 2338700 2338766 -83356988 + GA-rich Low_complexity Low_complexity 1 66 0 248 221 0 15 chr15 2339214 2339282 -83356472 + GA-rich Low_complexity Low_complexity 3 69 0 380 215 33 66 chr15 2339868 2339989 -83355765 + L1MC4 LINE L1 7434 7550 -492 453 292 38 14 chr15 2340419 2340628 -83355126 + L1MC4 LINE L1 7689 7902 -140 208 313 16 0 chr15 2340638 2340702 -83355052 + (TATG)n Simple_repeat Simple_repeat 4 68 0 338 230 36 43 chr15 2340703 2340842 -83354912 + L1MC4 LINE L1 7903 8040 -2 1557 157 28 0 chr15 2340911 2341159 -83354595 + AluJb SINE Alu 3 257 -55 271 207 0 0 chr15 2341243 2341301 -83354453 - MLT1I LTR MaLR -12 397 340 1522 186 11 0 chr15 2341446 2341761 -83353993 - AluJb SINE Alu 0 318 1 785 254 54 94 chr15 2342274 2342680 -83353074 + MLT1I LTR MaLR 18 407 -2 824 254 36 10 chr15 2343682 2343875 -83351879 - AluJb SINE Alu -28 284 87 2490 216 75 28 chr15 2344833 2345538 -83350216 - L1ME2 LINE L1 -37 6127 5390 229 200 0 0 chr15 2345575 2345615 -83350139 + L2 LINE L2 3265 3304 -9 1135 267 160 13 chr15 2347703 2348274 -83347480 - L2 LINE L2 -126 3187 2536 533 212 35 104 chr15 2348590 2348821 -83346933 + MER58C DNA MER1_type 1 215 0 21 0 0 0 chr15 2349826 2349847 -83345907 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 2349868 2349896 -83345858 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 2350523 2350551 -83345203 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 2350978 2350996 -83344758 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr15 2350996 2351022 -83344732 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr15 2351956 2351995 -83343759 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 2352490 2352512 -83343242 + AT_rich Low_complexity Low_complexity 1 22 0 465 297 62 16 chr15 2352720 2352912 -83342842 + L1ME LINE L1 3 203 -5867 320 280 33 47 chr15 2352953 2353103 -83342651 + L1ME LINE L1 595 742 -5328 231 225 0 0 chr15 2357382 2357422 -83338332 + Tigger7 DNA MER2_type 228 267 -2220 270 176 20 0 chr15 2357435 2357486 -83338268 + Tigger7 DNA MER2_type 2536 2587 0 2036 128 0 19 chr15 2357518 2357831 -83337923 - AluSx SINE Alu -5 307 1 2240 61 7 17 chr15 2358222 2358547 -83337207 - AluY SINE Alu 0 311 1 466 190 20 0 chr15 2358777 2358877 -83336877 + L1MB5 LINE L1 5743 5844 -330 285 289 40 27 chr15 2359370 2359519 -83336235 - L1MC/D LINE L1 -2342 5466 5316 * 857 215 47 6 chr15 2359498 2359728 -83336026 - L1MB4 LINE L1 -119 6047 5792 1357 248 126 63 chr15 2359728 2360065 -83335689 - L1MB4 LINE L1 -1375 4771 4457 246 114 0 0 chr15 2360065 2360100 -83335654 - U2 snRNA snRNA -153 35 1 1357 248 126 63 chr15 2360100 2360633 -83335121 - L1MB4 LINE L1 -1689 4457 3810 849 318 146 52 chr15 2360635 2361361 -83334393 + L2 LINE L2 1822 2615 -699 855 322 107 29 chr15 2361457 2361830 -83333924 + L2 LINE L2 2824 3239 -74 960 139 0 0 chr15 2361830 2361988 -83333766 + (TA)n Simple_repeat Simple_repeat 2 159 0 855 322 107 29 chr15 2361988 2362061 -83333693 + L2 LINE L2 3239 3305 -8 663 317 45 5 chr15 2362521 2362864 -83332890 - LTR33 LTR ERVL -2 519 102 334 291 60 15 chr15 2362938 2363072 -83332682 - MLT1L LTR MaLR -112 503 364 225 309 85 0 chr15 2363481 2363575 -83332179 - L3 LINE CR1 -157 1420 1319 26 82 0 0 chr15 2364711 2364772 -83330982 + AT_rich Low_complexity Low_complexity 1 61 0 1715 93 14 54 chr15 2415078 2415356 -83280398 + AluSp SINE Alu 34 300 -13 2002 121 0 36 chr15 2415358 2415664 -83280090 + AluSq SINE Alu 1 295 -18 334 307 42 28 chr15 2415697 2415909 -83279845 + L1MEc LINE L1 1850 2064 -4332 365 261 0 0 chr15 2415918 2416010 -83279744 + L1MEc LINE L1 2255 2346 -4050 475 225 8 23 chr15 2416110 2416239 -83279515 + AluSp/q SINE Alu 187 313 0 482 270 138 6 chr15 2416331 2416490 -83279264 + L1MD3 LINE L1 6663 6842 -1153 2297 125 0 0 chr15 2416523 2416835 -83278919 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 2416869 2416891 -83278863 + AT_rich Low_complexity Low_complexity 1 22 0 2086 121 3 0 chr15 2417163 2417452 -83278302 - AluSc SINE Alu -19 290 1 2493 123 14 34 chr15 2417452 2417866 -83277888 - L1MA3 LINE L1 -246 6059 5654 5473 146 11 53 chr15 2419140 2419196 -83276558 + L1M1 LINE L1 4286 4343 -1928 2311 105 0 0 chr15 2419196 2419501 -83276253 - AluSx SINE Alu -7 305 1 5473 146 11 53 chr15 2419501 2420749 -83275005 + L1M1 LINE L1 4343 5526 -745 21 36 0 0 chr15 2420961 2420989 -83274765 + AT_rich Low_complexity Low_complexity 1 28 0 38 61 0 0 chr15 2421445 2421511 -83274243 + AT_rich Low_complexity Low_complexity 1 66 0 1399 208 0 4 chr15 2422250 2422495 -83273259 - AluJo SINE Alu -68 244 1 243 0 0 0 chr15 2422535 2422562 -83273192 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2294 98 7 3 chr15 2422669 2422975 -83272779 + AluY SINE Alu 1 307 -4 357 285 89 0 chr15 2423008 2423131 -83272623 + MIR SINE MIR 129 262 0 1185 233 66 13 chr15 2424044 2424421 -83271333 - L1M4 LINE L1 -2118 4028 3632 2118 250 64 30 chr15 2424457 2425384 -83270370 - L1M4 LINE L1 -2436 3710 2753 1349 246 35 11 chr15 2425485 2425948 -83269806 + L1MEc LINE L1 3095 3568 -2647 1695 177 31 0 chr15 2425948 2426236 -83269518 - AluJo SINE Alu -15 297 1 1622 240 112 14 chr15 2426236 2426752 -83269002 - L1ME3 LINE L1 -107 6055 5489 1827 108 35 0 chr15 2427881 2428139 -83267615 - AluSq SINE Alu -11 302 36 1484 61 0 0 chr15 2428144 2428324 -83267430 - AluY SINE Alu -13 298 119 471 248 198 5 chr15 2428437 2428659 -83267095 + L1M4 LINE L1 2293 2557 -3589 385 188 0 0 chr15 2429352 2429416 -83266338 - AluSq SINE Alu -5 297 234 1250 132 0 0 chr15 2429416 2429583 -83266171 - AluSq SINE Alu -146 167 1 2090 203 69 19 chr15 2429583 2430149 -83265605 + L1M4 LINE L1 2683 3276 -2870 230 330 31 0 chr15 2430192 2430289 -83265465 - MIR SINE MIR -22 240 141 872 184 0 13 chr15 2430297 2430449 -83265305 - FRAM SINE Alu -21 155 6 1340 108 0 0 chr15 2430825 2431001 -83264753 + AluY SINE Alu 131 306 -5 2216 110 3 13 chr15 2431010 2431318 -83264436 + AluSq SINE Alu 1 305 -8 1534 151 43 18 chr15 2431319 2431597 -83264157 + L1MB3 LINE L1 5324 5608 -572 572 254 0 0 chr15 2431598 2431716 -83264038 + FLAM_C SINE Alu 2 119 -24 634 137 0 0 chr15 2431726 2431828 -83263926 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 2431828 2431860 -83263894 + AT_rich Low_complexity Low_complexity 1 32 0 2440 87 0 0 chr15 2432272 2432572 -83263182 + AluY SINE Alu 1 300 -11 457 226 73 7 chr15 2433145 2433282 -83262472 - MER21B LTR ERV1 -57 806 661 584 246 17 17 chr15 2433289 2433468 -83262286 + L1MDa LINE L1 1541 1719 -4821 2056 169 120 2 chr15 2433513 2433938 -83261816 + LTR53 LTR ERVL 5 479 -40 620 158 82 7 chr15 2434011 2434157 -83261597 + L1MC/D LINE L1 5323 5479 -880 326 319 142 14 chr15 2434989 2435071 -83260683 + L1MC4a LINE L1 5856 5926 -1882 1961 136 3 7 chr15 2435071 2435379 -83260375 + AluSq SINE Alu 1 307 -6 326 319 142 14 chr15 2435379 2435578 -83260176 + L1MC4a LINE L1 5926 6173 -1635 315 0 0 0 chr15 2435820 2435855 -83259899 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 269 0 0 chr15 2435861 2435913 -83259841 + MER58B DNA MER1_type 13 64 -277 1650 87 8 75 chr15 2435958 2436210 -83259544 - AluSx SINE Alu -77 235 1 965 209 42 35 chr15 2436216 2436475 -83259279 + MER58B DNA MER1_type 80 340 -1 1952 140 13 13 chr15 2436706 2437006 -83258748 + AluSg1 SINE Alu 1 300 -9 6465 175 45 23 chr15 2438200 2438971 -83256783 - L1 LINE L1 -1984 4162 3345 2031 148 0 7 chr15 2438971 2439276 -83256478 - AluSx SINE Alu -9 303 1 6465 175 45 23 chr15 2439276 2439872 -83255882 - L1 LINE L1 -2801 3345 2764 * 7666 153 20 8 chr15 2439864 2441185 -83254569 - L1 LINE L1 -1158 4988 3652 1838 213 38 27 chr15 2441185 2441664 -83254090 - L1 LINE L1 -3384 2762 2279 1147 205 139 13 chr15 2441678 2441981 -83253773 + MLT1E1 LTR MaLR 305 645 -9 737 191 8 15 chr15 2442173 2442304 -83253450 + AluJo SINE Alu 12 141 -171 1784 150 18 3 chr15 2442306 2442592 -83253162 + AluJb SINE Alu 1 290 -22 52 0 0 0 chr15 2442592 2442644 -83253110 + AT_rich Low_complexity Low_complexity 1 52 0 2230 113 3 3 chr15 2442937 2443239 -83252515 + AluY SINE Alu 1 302 -9 806 160 0 0 chr15 2443347 2443472 -83252282 + FLAM_C SINE Alu 1 125 -18 2051 98 61 0 chr15 2443771 2444048 -83251706 - AluSc SINE Alu -15 294 1 2229 106 7 0 chr15 2444079 2444371 -83251383 - AluSx SINE Alu -18 294 1 810 260 56 86 chr15 2444479 2444910 -83250844 + L1MD1 LINE L1 5825 6242 0 2293 78 17 3 chr15 2445329 2445624 -83250130 + AluSx SINE Alu 1 299 -13 2032 100 21 21 chr15 2446293 2446583 -83249171 + AluSx SINE Alu 1 290 -22 2161 105 17 3 chr15 2447098 2447393 -83248361 - AluSq SINE Alu -14 299 1 191 188 21 0 chr15 2448576 2448624 -83247130 + GA-rich Low_complexity Low_complexity 1 49 0 35 88 0 0 chr15 2448949 2449040 -83246714 + GC_rich Low_complexity Low_complexity 1 91 0 25 31 0 0 chr15 2449069 2449101 -83246653 + GC_rich Low_complexity Low_complexity 1 32 0 1633 133 48 44 chr15 2449697 2449991 -83245763 + AluJo SINE Alu 1 295 -17 1290 123 0 0 chr15 2449995 2450166 -83245588 + AluSx SINE Alu 1 171 -141 422 130 0 0 chr15 2450267 2450336 -83245418 - AluS SINE Alu -242 70 2 578 234 114 10 chr15 2450337 2450538 -83245216 - L1 LINE L1 -3250 2896 2675 302 202 53 26 chr15 2450538 2450630 -83245124 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 2083 83 0 18 chr15 2450630 2450906 -83244848 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 2450906 2450927 -83244827 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2351 73 0 48 chr15 2450927 2451240 -83244514 + AluY SINE Alu 1 298 -13 330 229 133 0 chr15 2451242 2451347 -83244407 - L1 LINE L1 -3460 2686 2568 1339 101 106 0 chr15 2452317 2452525 -83243229 + MER30 DNA MER1_type 1 230 0 1621 146 92 0 chr15 2453508 2453769 -83241985 - AluJb SINE Alu -19 293 9 934 279 126 26 chr15 2454781 2455069 -83240685 - L1ME2 LINE L1 -112 6052 5794 1808 160 13 3 chr15 2455069 2455376 -83240378 - AluJb SINE Alu 0 312 3 934 279 126 26 chr15 2455376 2455588 -83240166 - L1ME2 LINE L1 -370 5794 5502 2152 133 3 3 chr15 2456124 2456433 -83239321 - AluSp SINE Alu -4 309 1 2186 131 0 0 chr15 2456456 2456762 -83238992 - AluSx SINE Alu -6 306 1 268 103 0 138 chr15 2457524 2457611 -83238143 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 237 281 35 18 chr15 2458272 2458386 -83237368 + Charlie5 DNA MER1_type 1 116 -2496 * 1135 232 3 10 chr15 2458381 2458691 -83237063 + Charlie5 DNA MER1_type 2222 2529 -83 1992 118 3 70 chr15 2458691 2459006 -83236748 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 2459027 2459077 -83236677 + T-rich Low_complexity Low_complexity 5 56 0 1952 152 0 3 chr15 2459111 2459394 -83236360 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 2460079 2460109 -83235645 + AT_rich Low_complexity Low_complexity 1 30 0 376 78 0 0 chr15 2460601 2460652 -83235102 - Alu SINE Alu -250 52 2 2205 125 3 0 chr15 2460872 2461176 -83234578 - AluSx SINE Alu -7 305 1 1676 154 7 7 chr15 2461286 2461559 -83234195 - AluSx SINE Alu -39 273 1 375 220 63 107 chr15 2462756 2462848 -83232906 - L1MC5 LINE L1 -49 7912 7817 2234 124 0 0 chr15 2462848 2463154 -83232600 - AluSq SINE Alu -7 306 1 375 220 63 107 chr15 2463154 2463379 -83232375 - L1MC5 LINE L1 -144 7817 7609 1278 154 6 101 chr15 2464005 2464232 -83231522 - AluJb SINE Alu 0 312 128 1729 162 0 29 chr15 2464232 2464540 -83231214 + AluSp SINE Alu 1 299 -14 1278 154 6 101 chr15 2464540 2464657 -83231097 - AluJb SINE Alu -184 128 1 1645 166 6 43 chr15 2464685 2465010 -83230744 + AluSp SINE Alu 1 313 0 764 229 13 48 chr15 2465045 2465158 -83230596 - AluJb SINE Alu -92 220 117 1654 163 7 10 chr15 2465158 2465465 -83230289 + AluSp SINE Alu 1 306 -7 764 229 13 48 chr15 2465465 2465578 -83230176 - AluJb SINE Alu -195 117 2 1637 149 3 50 chr15 2465613 2465935 -83229819 + AluSp SINE Alu 7 313 0 558 176 9 9 chr15 2465946 2466054 -83229700 - FLAM_C SINE Alu -34 109 2 264 108 0 0 chr15 2466083 2466120 -83229634 + AluSp SINE Alu 1 37 -265 2433 157 47 19 chr15 2466151 2466623 -83229131 - LTR15 LTR ERV1 -7 486 2 923 131 24 42 chr15 2466624 2466792 -83228962 + AluSp SINE Alu 28 192 -121 405 233 124 30 chr15 2466793 2466840 -83228914 - L1MC4a LINE L1 -1866 5942 5901 1390 175 26 63 chr15 2466840 2467143 -83228611 - AluJb SINE Alu -20 292 1 405 233 124 30 chr15 2467143 2467297 -83228457 - L1MC4a LINE L1 -1907 5901 5722 286 271 125 20 chr15 2467405 2467648 -83228106 + L1ME3A LINE L1 5257 5395 -769 350 296 78 31 chr15 2467705 2467978 -83227776 + L1ME4a LINE L1 5650 5934 -206 352 139 0 97 chr15 2468011 2468083 -83227671 + AluSx SINE Alu 1 54 -248 * 7589 87 14 21 chr15 2468082 2469146 -83226608 - MER11C LTR ERVK -14 1057 1 1556 113 96 0 chr15 2469146 2469376 -83226378 + AluSx SINE Alu 49 300 -12 225 243 307 21 chr15 2469719 2469859 -83225895 + L2 LINE L2 3114 3293 -20 813 196 25 27 chr15 2470499 2470686 -83225068 - L1MC3 LINE L1 -2 7765 6196 375 231 146 15 chr15 2471908 2472038 -83223716 + MER103 DNA DNA 8 154 -12 213 149 21 21 chr15 2472346 2472393 -83223361 + MER5A DNA MER1_type 121 167 -22 2728 42 0 0 chr15 2472716 2473027 -83222727 - AluY SINE Alu 0 311 1 1785 282 39 89 chr15 2475517 2476312 -83219442 + L1ME3A LINE L1 5407 6161 -9 225 0 0 0 chr15 2476514 2476539 -83219215 + (TTCCC)n Simple_repeat Simple_repeat 5 29 0 2227 71 0 3 chr15 2477175 2477498 -83218256 - AluY SINE Alu 0 322 1 2458 31 41 0 chr15 2478242 2478536 -83217218 - AluY SINE Alu -5 306 1 2816 228 66 40 chr15 2479713 2479971 -83215783 - L1ME1 LINE L1 -5 6161 5911 1931 149 0 3 chr15 2479971 2480280 -83215474 - AluJb SINE Alu -4 308 1 2816 228 66 40 chr15 2480280 2481660 -83214094 - L1ME1 LINE L1 -255 5911 4493 278 284 179 36 chr15 2481682 2482547 -83213207 + L1MEc LINE L1 829 1817 -4579 711 81 0 0 chr15 2482605 2482704 -83213050 - AluY SINE Alu -4 307 209 315 274 109 109 chr15 2482938 2482982 -83212772 + L1MEc LINE L1 1835 1878 -4337 2044 129 0 0 chr15 2482982 2483285 -83212469 + AluSx SINE Alu 1 303 -9 315 274 109 109 chr15 2483285 2483506 -83212248 + L1MEc LINE L1 1877 2100 -4115 1133 143 0 0 chr15 2483520 2483695 -83212059 + AluSg/x SINE Alu 121 295 -17 1696 194 48 18 chr15 2483695 2484087 -83211667 + L1MB4 LINE L1 5777 6180 0 633 207 90 59 chr15 2484879 2485101 -83210653 + L1MC5 LINE L1 7680 7908 -53 1778 104 12 0 chr15 2485697 2485956 -83209798 + AluSq SINE Alu 1 262 -51 1467 200 225 25 chr15 2485962 2486473 -83209281 + MER90 LTR ERV1 2 614 0 1921 156 3 3 chr15 2487099 2487406 -83208348 + AluJb SINE Alu 3 309 -3 397 303 30 12 chr15 2487409 2487574 -83208180 + L1MC3 LINE L1 6706 6873 -912 398 235 61 17 chr15 2487757 2487872 -83207882 + L1MC5 LINE L1 7107 7226 -735 351 286 109 11 chr15 2488006 2488181 -83207573 + L1MC5 LINE L1 7305 7496 -465 1085 189 55 103 chr15 2488188 2488358 -83207396 + MLT1B LTR MaLR 4 181 -215 2114 121 7 0 chr15 2488358 2488664 -83207090 + AluSp SINE Alu 5 312 -1 1085 189 55 103 chr15 2488664 2488749 -83207005 + MLT1B LTR MaLR 181 269 -127 2380 79 0 3 chr15 2488749 2489053 -83206701 + AluY SINE Alu 1 303 -8 1085 189 55 103 chr15 2489053 2489211 -83206543 + MLT1B LTR MaLR 269 396 0 386 243 52 66 chr15 2489216 2489504 -83206250 + L1MC5 LINE L1 7494 7777 -184 195 331 236 8 chr15 2489812 2490066 -83205688 + L2 LINE L2 2997 3308 -5 1032 254 53 22 chr15 2491422 2491745 -83204009 - MER58B DNA MER1_type -5 336 4 2068 225 70 39 chr15 2491899 2492486 -83203268 + MER77 LTR ERV1 1 605 0 2248 85 3 0 chr15 2492949 2493242 -83202512 + AluSc SINE Alu 1 294 -15 244 367 61 0 chr15 2496509 2496607 -83199147 + L2 LINE L2 3168 3271 -1 2220 92 7 0 chr15 2497043 2497338 -83198416 - AluSq SINE Alu -16 297 1 1855 163 0 0 chr15 2497347 2497636 -83198118 - AluJb SINE Alu -23 289 1 350 267 22 0 chr15 2499741 2499831 -83195923 + L1M4 LINE L1 2728 2819 -3327 514 231 35 35 chr15 2499899 2500102 -83195652 + L1M4 LINE L1 2847 3049 -3097 362 214 32 97 chr15 2500156 2500310 -83195444 + L1MC5 LINE L1 6957 7100 -861 530 295 70 44 chr15 2500478 2500932 -83194822 + L1MC5 LINE L1 7317 7782 -179 936 61 0 0 chr15 2500935 2501049 -83194705 + AluY SINE Alu 1 114 -197 2247 94 0 3 chr15 2501418 2501727 -83194027 - AluSq SINE Alu -5 308 1 314 217 80 51 chr15 2501729 2501904 -83193850 + L1MC4a LINE L1 5703 5882 -1926 1743 146 4 0 chr15 2503398 2503673 -83192081 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 2503675 2503742 -83192012 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 2503764 2503789 -83191965 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4349 212 66 27 chr15 2503789 2504598 -83191156 + L1MDa LINE L1 1483 2259 -4281 1617 161 83 9 chr15 2504598 2504934 -83190820 - MER46B DNA MER2_type 0 236 1 4349 212 66 27 chr15 2504934 2505367 -83190387 + L1MDa LINE L1 2259 2795 -3745 2003 110 27 7 chr15 2505367 2505659 -83190095 + AluSq SINE Alu 1 298 -15 4349 212 66 27 chr15 2505659 2505911 -83189843 + L1MDa LINE L1 2795 3036 -3504 369 298 159 7 chr15 2506091 2506242 -83189512 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 2507087 2507212 -83188542 + MIR3 SINE MIR 42 174 -34 324 309 59 59 chr15 2509426 2509630 -83186124 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 2510777 2510953 -83184801 + L1ME2 LINE L1 5982 6163 -1 1632 149 49 14 chr15 2510973 2511261 -83184493 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 2511889 2512153 -83183601 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 2512166 2512193 -83183561 + AT_rich Low_complexity Low_complexity 1 27 0 533 292 1 23 chr15 2512999 2514103 -83181651 + CT-rich Low_complexity Low_complexity 1 1078 0 2199 67 0 3 chr15 2514306 2514628 -83181126 + AluY SINE Alu 1 321 0 184 340 113 0 chr15 2514664 2514770 -83180984 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 2515112 2515235 -83180519 - MIR3 SINE MIR -9 199 53 1997 133 10 0 chr15 2515594 2515903 -83179851 - AluSp SINE Alu -1 312 1 532 234 188 20 chr15 2516038 2516235 -83179519 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 2517836 2517950 -83177804 - L2 LINE L2 -3 3310 3188 409 301 66 0 chr15 2518087 2518223 -83177531 - MIR SINE MIR -70 192 48 222 250 0 0 chr15 2520162 2520250 -83175504 + G-rich Low_complexity Low_complexity 2 89 0 1921 125 3 10 chr15 2520775 2521063 -83174691 + AluSx SINE Alu 1 286 -26 603 51 0 0 chr15 2521064 2521143 -83174611 + (CA)n Simple_repeat Simple_repeat 2 80 0 790 151 68 14 chr15 2521529 2521675 -83174079 + MER5A DNA MER1_type 3 156 -33 1331 186 37 15 chr15 2522420 2522689 -83173065 + AluJo SINE Alu 1 275 -37 362 238 109 39 chr15 2522798 2523144 -83172610 + L1P2 LINE L1 5174 5565 -589 2006 117 3 0 chr15 2523715 2524054 -83171700 - AluSx SINE Alu 0 340 1 709 192 103 0 chr15 2524245 2524401 -83171353 + MER5A DNA MER1_type 16 187 -2 669 293 25 37 chr15 2524631 2524952 -83170802 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 2525449 2525526 -83170228 - L1M4 LINE L1 -1310 4836 4750 1663 85 4 8 chr15 2525543 2525779 -83169975 - AluY SINE Alu -13 298 64 871 29 0 0 chr15 2525879 2525982 -83169772 - AluY SINE Alu -208 103 1 847 316 168 14 chr15 2526712 2527333 -83168421 - L2 LINE L2 -245 3068 2353 233 269 60 0 chr15 2527509 2527576 -83168178 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 2528194 2528582 -83167172 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 2528586 2528699 -83167055 + AluJo SINE Alu 2 105 -207 1657 138 0 47 chr15 2528699 2529017 -83166737 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 2529017 2529130 -83166624 + AluJo SINE Alu 105 220 -92 252 33 0 0 chr15 2529132 2529162 -83166592 + AluJb SINE Alu 88 117 -185 1425 171 3 24 chr15 2529175 2529468 -83166286 - AluSp SINE Alu -20 293 7 1453 123 13 101 chr15 2529480 2529798 -83165956 - AluSx SINE Alu -1 311 22 580 161 8 17 chr15 2529805 2529923 -83165831 + FLAM_C SINE Alu 1 117 -16 1446 143 13 30 chr15 2529934 2530235 -83165519 - AluSp SINE Alu -17 296 1 759 223 60 33 chr15 2530264 2530388 -83165366 + AluJo SINE Alu 2 136 -176 1833 111 0 21 chr15 2530388 2530676 -83165078 - AluSq SINE Alu -15 298 17 759 223 60 33 chr15 2530676 2530766 -83164988 + AluJo SINE Alu 136 222 -90 1292 86 10 15 chr15 2530807 2531004 -83164750 - AluSg/x SINE Alu -2 308 113 430 241 142 61 chr15 2531292 2531369 -83164385 + L1M4 LINE L1 2128 2197 -3949 1961 104 20 14 chr15 2531369 2531666 -83164088 + AluSg SINE Alu 7 305 -5 430 241 142 61 chr15 2531666 2532243 -83163511 + L1M4 LINE L1 2197 2835 -3311 1375 122 77 12 chr15 2533257 2533504 -83162250 - L1PA10 LINE L1 -2 6166 5904 373 172 21 0 chr15 2533530 2533623 -83162131 + (TATATG)n Simple_repeat Simple_repeat 3 97 0 301 300 100 0 chr15 2533623 2533733 -83162021 + L1MC4 LINE L1 6583 6703 -1339 391 337 0 50 chr15 2533798 2533979 -83161775 + L1MC4 LINE L1 6531 6702 -1340 200 345 0 0 chr15 2534509 2534564 -83161190 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 2534783 2535092 -83160662 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 2535287 2535412 -83160342 - MER103 DNA DNA -20 146 2 852 173 64 99 chr15 2535629 2535941 -83159813 + AluY SINE Alu 1 301 0 570 291 44 27 chr15 2535945 2536019 -83159735 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 2536019 2536409 -83159345 + MLT1A1 LTR MaLR 1 365 0 570 291 44 27 chr15 2536409 2536630 -83159124 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 2536642 2536761 -83158993 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 2536767 2536790 -83158964 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1455 160 68 14 chr15 2536839 2537120 -83158634 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 2537128 2537148 -83158606 + (T)n Simple_repeat Simple_repeat 1 20 0 287 238 16 0 chr15 2537349 2537412 -83158342 - MIR SINE MIR -112 150 87 1497 175 20 37 chr15 2537641 2537938 -83157816 - AluJo SINE Alu -20 292 1 226 288 0 0 chr15 2537952 2538018 -83157736 + L1MC4 LINE L1 6640 6705 -1337 890 220 30 56 chr15 2538193 2538497 -83157257 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 2538670 2538706 -83157048 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 456 143 0 0 chr15 2538706 2538790 -83156964 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2063 128 3 3 chr15 2539262 2539574 -83156180 - AluJb SINE Alu 0 312 1 292 214 0 0 chr15 2539664 2539720 -83156034 + MER3 DNA MER1_type 1 56 -153 864 195 53 0 chr15 2539731 2539900 -83155854 + AluJb SINE Alu 133 310 -2 374 284 121 75 chr15 2539900 2540139 -83155615 + L1MEd LINE L1 931 1180 -4939 2013 113 0 0 chr15 2540144 2540453 -83155301 - AluY SINE Alu 0 309 1 21 0 0 0 chr15 2541451 2541472 -83154282 + AT_rich Low_complexity Low_complexity 1 21 0 3805 192 62 59 chr15 2543900 2544716 -83151038 - L1MB5 LINE L1 0 6174 5361 2201 113 0 0 chr15 2544716 2545027 -83150727 - AluSx SINE Alu -1 311 1 3805 192 62 59 chr15 2545027 2545920 -83149834 - L1MB5 LINE L1 -813 5361 4457 1579 209 70 25 chr15 2545925 2546066 -83149688 - L1MB5 LINE L1 -2486 3660 3527 2323 73 0 0 chr15 2546066 2546367 -83149387 - AluY SINE Alu -10 301 1 1579 209 70 25 chr15 2546367 2546610 -83149144 - L1MB5 LINE L1 -2619 3527 3243 2135 112 0 13 chr15 2546610 2546923 -83148831 - AluSc SINE Alu 0 309 1 1579 209 70 25 chr15 2546923 2547062 -83148692 - L1MB5 LINE L1 -2903 3243 3112 926 199 0 5 chr15 2547067 2547263 -83148491 - AluJb SINE Alu 0 312 118 1429 227 56 13 chr15 2547263 2547725 -83148029 - L1MB5 LINE L1 -3052 3094 2613 1530 148 0 44 chr15 2547858 2548129 -83147625 + AluJb SINE Alu 23 281 -31 201 139 0 0 chr15 2548144 2548187 -83147567 + (TC)n Simple_repeat Simple_repeat 2 44 0 46 54 0 0 chr15 2548187 2548261 -83147493 + AT_rich Low_complexity Low_complexity 1 74 0 1871 267 50 46 chr15 2548261 2549227 -83146527 - HERVL68 LTR ERVL -1920 1117 60 2328 176 109 0 chr15 2549235 2549740 -83146014 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 2549742 2549882 -83145872 - L1ME LINE L1 -339 5782 5631 1509 173 80 43 chr15 2552931 2553343 -83142411 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 2553344 2553733 -83142021 - MLT1C LTR MaLR -46 421 3 329 319 6 0 chr15 2554562 2554731 -83141023 + (TG)n Simple_repeat Simple_repeat 1 170 0 782 141 0 0 chr15 2555208 2555329 -83140425 + FLAM_A SINE Alu 20 140 -2 2084 112 0 13 chr15 2556154 2556459 -83139295 + AluSg SINE Alu 1 301 -9 2129 86 7 13 chr15 2558035 2558339 -83137415 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 2558362 2558468 -83137286 - L1ME4a LINE L1 0 6121 5995 356 242 10 0 chr15 2560505 2560604 -83135150 + MER5A DNA MER1_type 10 98 -80 2244 85 0 0 chr15 2560838 2561132 -83134622 + AluY SINE Alu 3 296 -15 856 135 0 81 chr15 2561132 2561317 -83134437 + AluSg/x SINE Alu 134 303 -9 992 99 0 0 chr15 2561433 2561564 -83134190 - AluY SINE Alu -180 131 1 506 317 48 78 chr15 2562906 2563284 -83132470 - L1MCa LINE L1 -4673 1753 1228 348 294 59 51 chr15 2563305 2563518 -83132236 - L1MCa LINE L1 -5063 1353 1143 2258 86 10 0 chr15 2563518 2563821 -83131933 - AluSg SINE Alu -4 306 1 348 294 59 51 chr15 2563821 2564080 -83131674 - L1MCa LINE L1 -5273 1143 877 384 274 18 0 chr15 2564584 2564697 -83131057 - L1MCa LINE L1 -5954 462 348 979 197 170 3 chr15 2565271 2565423 -83130331 + MER2 DNA MER2_type 2 127 -217 2448 74 0 0 chr15 2565423 2565734 -83130020 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 2565734 2565875 -83129879 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 2565977 2566086 -83129668 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 2567130 2567304 -83128450 + MER58A DNA MER1_type 44 224 0 1727 125 30 56 chr15 2567629 2567934 -83127820 + AluSg SINE Alu 1 297 -13 261 57 0 0 chr15 2569256 2569291 -83126463 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 895 163 0 18 chr15 2570416 2570582 -83125172 - 7SLRNA srpRNA srpRNA -63 257 95 267 287 189 0 chr15 2571288 2571410 -83124344 - MIR SINE MIR -70 192 48 1761 141 0 54 chr15 2571427 2571740 -83124014 - AluSx SINE Alu -15 297 2 222 216 39 0 chr15 2572780 2572831 -83122923 - MIR SINE MIR -61 147 95 184 250 231 0 chr15 2573168 2573220 -83122534 - MIR SINE MIR -111 151 88 229 173 27 80 chr15 2574025 2574046 -83121708 - L1MC4a LINE L1 -1853 5955 5934 246 62 0 0 chr15 2574046 2574078 -83121676 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 173 27 80 chr15 2574078 2574131 -83121623 - L1MC4a LINE L1 -1874 5934 5885 322 278 70 17 chr15 2575409 2575524 -83120230 - L2 LINE L2 -5 3308 3188 286 336 131 0 chr15 2575544 2575681 -83120073 - MIR3 SINE MIR -23 185 31 342 250 10 48 chr15 2576659 2576763 -83118991 - MIR SINE MIR -115 147 48 2161 97 7 3 chr15 2576769 2577067 -83118687 - AluY SINE Alu -12 299 1 1184 179 0 5 chr15 2777080 2777275 -82918479 + MLT1A1 LTR MaLR 172 365 0 2973 277 58 64 chr15 2777437 2777588 -82918166 + L2 LINE L2 1531 1681 -1632 3486 47 21 36 chr15 2777588 2777928 -82917826 - L1PA8 LINE L1 -2 6170 5837 2348 110 0 0 chr15 2777928 2778229 -82917525 - AluSg SINE Alu -7 303 3 3486 47 21 36 chr15 2778229 2778360 -82917394 - L1PA8 LINE L1 -335 5837 5706 2973 277 58 64 chr15 2778360 2778513 -82917241 + L2 LINE L2 1681 1833 -1480 2367 79 0 23 chr15 2778513 2778816 -82916938 - AluY SINE Alu -13 298 3 2973 277 58 64 chr15 2778816 2779670 -82916084 + L2 LINE L2 1833 2676 -637 2529 70 0 6 chr15 2779670 2779983 -82915771 + AluY SINE Alu 1 311 0 2973 277 58 64 chr15 2779983 2780618 -82915136 + L2 LINE L2 2676 3313 0 2191 109 3 0 chr15 2780840 2781143 -82914611 - AluY SINE Alu -7 304 1 2274 141 0 57 chr15 2781232 2781505 -82914249 + L1PA13 LINE L1 5767 6010 -153 2350 78 0 0 chr15 2781505 2781825 -82913929 + AluY SINE Alu 1 320 0 2274 141 0 57 chr15 2781825 2781970 -82913784 + L1PA13 LINE L1 6010 6162 -1 358 241 8 0 chr15 2782055 2782311 -82913443 + (CA)n Simple_repeat Simple_repeat 1 258 0 471 291 0 22 chr15 2782362 2782544 -82913210 + (CA)n Simple_repeat Simple_repeat 1 178 0 408 264 9 5 chr15 2782555 2782774 -82912980 + (CA)n Simple_repeat Simple_repeat 1 220 0 514 294 0 17 chr15 2782881 2783061 -82912693 + (CA)n Simple_repeat Simple_repeat 2 178 0 195 114 0 0 chr15 2783122 2783157 -82912597 + (CA)n Simple_repeat Simple_repeat 2 36 0 278 342 80 35 chr15 2783735 2784133 -82911621 + L2 LINE L2 2288 2703 -611 194 350 117 15 chr15 2785478 2785615 -82910139 + L2 LINE L2 2916 3066 -206 493 269 15 8 chr15 2786226 2786360 -82909394 - L2 LINE L2 0 3313 3179 5687 129 25 18 chr15 2786448 2787395 -82908359 - L1PA15 LINE L1 0 6165 5213 * 10225 228 32 7 chr15 2787383 2789918 -82905836 - L1PA15 LINE L1 -1270 4876 2280 811 285 90 42 chr15 2791040 2791419 -82904335 + MLT1J2 LTR MaLR 39 435 -15 552 335 41 61 chr15 2791438 2791951 -82903803 - L2 LINE L2 -261 3052 2549 2951 191 20 42 chr15 2792028 2792621 -82903133 + LTR22 LTR ERVK 1 580 0 2291 231 23 0 chr15 2793328 2793891 -82901863 - L1M4 LINE L1 -813 5333 4758 1602 224 107 95 chr15 2793883 2794441 -82901313 - L1M4 LINE L1 -2069 4077 3507 * 2461 44 0 17 chr15 2794441 2794734 -82901020 + AluY SINE Alu 1 288 -23 1602 224 107 95 chr15 2794734 2794873 -82900881 - L1M4 LINE L1 -2639 3507 3371 398 253 11 0 chr15 2795017 2795108 -82900646 - L1MCb LINE L1 -5880 165 74 2061 113 3 33 chr15 2795753 2796054 -82899700 - AluSx SINE Alu -20 292 1 2155 120 0 23 chr15 2796323 2796631 -82899123 - AluSx SINE Alu -11 301 1 2483 47 7 3 chr15 2797025 2797323 -82898431 - AluY SINE Alu -12 299 1 2091 281 103 20 chr15 2797445 2798262 -82897492 + L1MD2 LINE L1 272 1156 -5384 2513 214 27 102 chr15 2798300 2799025 -82896729 + L1MD2 LINE L1 3906 4555 -1985 2322 88 0 10 chr15 2799025 2799322 -82896432 + AluY SINE Alu 1 294 -17 2513 214 27 102 chr15 2799322 2799475 -82896279 + L1MD2 LINE L1 4555 4718 -1822 206 61 0 30 chr15 2799515 2799530 -82896224 + (TATAA)n Simple_repeat Simple_repeat 1 15 -17 2248 103 0 7 chr15 2799530 2799821 -82895933 + AluSq SINE Alu 1 289 -24 206 61 0 30 chr15 2799821 2799838 -82895916 + (TATAA)n Simple_repeat Simple_repeat 15 32 0 1242 246 34 34 chr15 2799852 2800270 -82895484 + L1MD2 LINE L1 4766 5183 -1357 2488 242 107 62 chr15 2800328 2800493 -82895261 + L1MD2 LINE L1 5196 5352 -1401 194 0 0 37 chr15 2800493 2800520 -82895234 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2488 242 107 62 chr15 2800520 2800916 -82894838 + L1MD2 LINE L1 5352 5729 -1024 2112 121 7 3 chr15 2800916 2801213 -82894541 + AluSx SINE Alu 3 300 -12 2488 242 107 62 chr15 2801213 2801423 -82894331 + L1MD2 LINE L1 5729 5928 -825 2722 45 0 0 chr15 2801423 2801734 -82894020 + AluY SINE Alu 1 311 0 2488 242 107 62 chr15 2801734 2802455 -82893299 + L1MD2 LINE L1 5928 6741 -12 463 279 73 62 chr15 2804188 2804529 -82891225 - L1ME LINE L1 -420 5701 5357 2270 95 3 19 chr15 2804679 2804995 -82890759 - AluY SINE Alu 0 311 1 420 300 56 4 chr15 2807051 2807284 -82888470 + L1 LINE L1 3535 3779 -2367 208 302 0 44 chr15 2809673 2809855 -82885899 + (CGGGG)n Simple_repeat Simple_repeat 3 176 0 246 269 13 13 chr15 2811495 2811573 -82884181 - L2 LINE L2 -564 2750 2673 429 183 43 43 chr15 2812807 2812900 -82882854 - Tigger7 DNA MER2_type 0 2487 2395 1817 162 20 0 chr15 2812905 2813199 -82882555 - Tigger7 DNA MER2_type -219 514 215 1440 192 48 0 chr15 2813199 2813449 -82882305 + Tigger7 DNA MER2_type 1 262 -2225 557 160 0 40 chr15 2813452 2813552 -82882202 + Tigger7 DNA MER2_type 2492 2587 0 197 259 0 52 chr15 2815046 2815104 -82880650 - L2 LINE L2 -2 3311 3257 1577 182 0 57 chr15 2815720 2816038 -82879716 - AluJo SINE Alu -12 300 1 1668 256 63 47 chr15 2816074 2816321 -82879433 - L1ME2 LINE L1 -2 6162 5921 195 42 0 0 chr15 2816321 2816345 -82879409 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 1668 256 63 47 chr15 2816345 2816821 -82878933 - L1ME2 LINE L1 -243 5921 5427 340 213 56 46 chr15 2816806 2816914 -82878840 - L1ME LINE L1 -598 5566 5458 * 1846 168 80 105 chr15 2816985 2817520 -82878234 - L1MC2 LINE L1 -9 6335 5814 3337 185 6 12 chr15 2817525 2818178 -82877576 - L1MC1 LINE L1 -3 6330 5682 2262 91 3 10 chr15 2818180 2818478 -82877276 - AluY SINE Alu -14 297 2 1622 273 75 24 chr15 2818480 2818651 -82877103 - L1MCc LINE L1 -3014 3927 3766 2323 79 4 0 chr15 2818651 2818972 -82876782 - AluSc SINE Alu 0 322 1 1622 273 75 24 chr15 2818972 2819624 -82876130 - L1MCc LINE L1 -3175 3766 3061 669 206 46 88 chr15 2819645 2819905 -82875849 - MLT2B1 LTR ERVL -41 491 282 363 188 62 21 chr15 2819935 2820031 -82875723 - MLT2D LTR ERVL -314 100 1 635 264 108 16 chr15 2820084 2820463 -82875291 - L1MCc LINE L1 -4134 2988 2575 341 86 17 0 chr15 2820493 2820551 -82875203 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 25 0 0 0 chr15 2820736 2820761 -82874993 + AT_rich Low_complexity Low_complexity 1 25 0 513 249 35 46 chr15 2820843 2821040 -82874714 - L2 LINE L2 -6 3307 3113 225 108 0 0 chr15 2821731 2821768 -82873986 + (CA)n Simple_repeat Simple_repeat 2 38 0 672 278 28 0 chr15 2821776 2821988 -82873766 - L1MCc LINE L1 -4604 2518 2301 5006 169 10 54 chr15 2821990 2822494 -82873260 + L1MA8 LINE L1 4784 5309 -982 2358 105 0 3 chr15 2822494 2822800 -82872954 + AluSx SINE Alu 6 310 -2 5006 169 10 54 chr15 2822800 2823857 -82871897 + L1MA8 LINE L1 5309 6287 -4 713 315 47 25 chr15 2823926 2824743 -82871011 - L1MCc LINE L1 -4888 1535 1180 186 43 0 0 chr15 2824998 2825021 -82870733 + (TTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 2826606 2826628 -82869126 + AT_rich Low_complexity Low_complexity 1 22 0 658 311 128 19 chr15 2827298 2827713 -82868041 + L2 LINE L2 2839 3298 -15 446 305 24 12 chr15 2827855 2828019 -82867735 + MIR SINE MIR 24 189 -73 23 0 0 0 chr15 2828239 2828262 -82867492 + AT_rich Low_complexity Low_complexity 1 23 0 2137 90 11 0 chr15 2828270 2828547 -82867207 + AluSg SINE Alu 1 280 -30 2523 59 3 0 chr15 2828547 2828852 -82866902 + AluY SINE Alu 1 306 -5 2600 222 64 67 chr15 2828889 2829733 -82866021 - L1MD2 LINE L1 -4 6355 5510 2540 52 3 3 chr15 2829733 2830043 -82865711 - AluY SINE Alu -1 310 1 2600 222 64 67 chr15 2830043 2830363 -82865391 - L1MD2 LINE L1 -849 5510 5191 2432 73 0 6 chr15 2830363 2830676 -82865078 + AluY SINE Alu 1 311 0 2600 222 64 67 chr15 2830676 2831261 -82864493 - L1MD2 LINE L1 -1168 5191 4622 219 36 0 0 chr15 2831421 2831449 -82864305 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1374 196 4 0 chr15 2831451 2831691 -82864063 - AluJb SINE Alu -30 282 42 2114 128 0 0 chr15 2832583 2832872 -82862882 + AluSx SINE Alu 1 289 -23 206 57 57 0 chr15 2834239 2834274 -82861480 + A-rich Low_complexity Low_complexity 3 39 0 1019 128 4 149 chr15 2834333 2834568 -82861186 + MLT1B LTR MaLR 190 390 0 271 290 0 0 chr15 2835164 2835226 -82860528 + MER81 DNA DNA 32 93 -21 2275 244 66 46 chr15 2835229 2836078 -82859676 - L1MD2 LINE L1 -1538 4608 3743 294 70 0 23 chr15 2836808 2836851 -82858903 + U2 snRNA snRNA 1 42 -146 376 341 60 27 chr15 2837005 2837304 -82858450 + L2 LINE L2 2301 2609 -705 254 321 43 36 chr15 2837415 2837555 -82858199 + L2 LINE L2 1959 2099 -1215 2064 131 24 3 chr15 2837803 2838093 -82857661 + AluJo SINE Alu 1 296 -16 231 178 78 67 chr15 2838834 2838924 -82856830 - MLT1L LTR MaLR -5 610 520 243 274 39 10 chr15 2839284 2839386 -82856368 + L1MC4 LINE L1 6600 6704 -1338 * 252 255 38 9 chr15 2839299 2839405 -82856349 - L1MC4 LINE L1 -1339 6703 6595 460 236 27 0 chr15 2839405 2839625 -82856129 + (TA)n Simple_repeat Simple_repeat 1 225 0 232 245 0 82 chr15 2839660 2839758 -82855996 - L1MC4 LINE L1 -1339 6703 6614 183 235 12 24 chr15 2839759 2839844 -82855910 + (TA)n Simple_repeat Simple_repeat 1 84 0 226 277 9 71 chr15 2839845 2839957 -82855797 + L1MC4 LINE L1 6614 6718 -1324 811 186 0 0 chr15 2840118 2840242 -82855512 - FLAM_C SINE Alu -18 125 2 2427 80 0 0 chr15 2840339 2840638 -82855116 + AluY SINE Alu 1 299 -12 279 318 45 18 chr15 2840649 2840759 -82854995 + L2 LINE L2 3160 3272 0 420 324 82 72 chr15 2841281 2841587 -82854167 + L2 LINE L2 2964 3272 0 2423 64 3 3 chr15 2841830 2842126 -82853628 - L1PA6 LINE L1 -1 6153 5858 2487 54 3 0 chr15 2842126 2842421 -82853333 + AluY SINE Alu 1 296 -15 3085 38 6 0 chr15 2842421 2842786 -82852968 - L1PA5 LINE L1 -1898 4248 3882 9924 36 0 0 chr15 2842786 2844684 -82851070 + L1PA5 LINE L1 4249 6149 -5 240 35 0 0 chr15 2844684 2844713 -82851041 + (TA)n Simple_repeat Simple_repeat 1 29 0 231 71 0 0 chr15 2844714 2844742 -82851012 - L1PA6 LINE L1 -258 5873 5846 * 756 16 0 157 chr15 2844739 2844805 -82850949 + L1P2 LINE L1 5391 5431 -723 2538 51 3 6 chr15 2844805 2845117 -82850637 + AluY SINE Alu 1 311 0 756 16 0 157 chr15 2845117 2845171 -82850583 + L1P2 LINE L1 5431 5492 -662 2115 125 0 0 chr15 2845344 2845641 -82850113 - AluSx SINE Alu -15 297 1 180 0 0 0 chr15 2845656 2845676 -82850078 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2329 53 3 7 chr15 2845678 2845962 -82849792 - AluY SINE Alu -24 287 5 189 419 31 16 chr15 2846046 2846175 -82849579 - L2 LINE L2 -1 3271 3141 26 0 0 0 chr15 2846440 2846466 -82849288 + AT_rich Low_complexity Low_complexity 1 26 0 253 354 97 0 chr15 2848011 2848155 -82847599 + MIR SINE MIR 31 188 -74 26 30 0 0 chr15 2848219 2848252 -82847502 + AT_rich Low_complexity Low_complexity 1 33 0 424 318 53 11 chr15 2848302 2848491 -82847263 + MIR SINE MIR 28 224 -38 21 57 0 0 chr15 2848496 2848531 -82847223 + AT_rich Low_complexity Low_complexity 1 35 0 239 311 36 44 chr15 2849052 2849300 -82846454 + L1 LINE L1 3532 3777 -2369 22 35 0 0 chr15 2850591 2850620 -82845134 + GC_rich Low_complexity Low_complexity 1 29 0 182 320 103 49 chr15 2850656 2850859 -82844895 - L2 LINE L2 -850 2464 2251 269 186 14 0 chr15 2851921 2851991 -82843763 + CT-rich Low_complexity Low_complexity 3 73 0 2120 114 7 7 chr15 2852199 2852506 -82843248 + AluSx SINE Alu 1 307 -5 195 298 41 50 chr15 2854243 2854364 -82841390 - L2 LINE L2 -609 2705 2586 225 238 202 24 chr15 2854367 2854451 -82841303 - L2 LINE L2 -1 3271 3173 955 273 73 23 chr15 2855292 2855659 -82840095 - L1M4c LINE L1 -2358 4024 3630 2037 147 144 5 chr15 2855659 2856034 -82839720 - MSTA LTR MaLR 0 428 2 955 273 73 23 chr15 2856034 2856105 -82839649 - L1M4c LINE L1 -2752 3630 3564 466 341 61 29 chr15 2856275 2856522 -82839232 + L2 LINE L2 2068 2336 -978 1514 199 14 7 chr15 2856522 2856842 -82838912 - AluJb SINE Alu 0 322 1 466 341 61 29 chr15 2856842 2857001 -82838753 + L2 LINE L2 2336 2488 -826 897 244 67 8 chr15 2857186 2857424 -82838330 - MLT1C LTR MaLR -2 465 214 27 62 0 0 chr15 2857826 2857874 -82837880 + AT_rich Low_complexity Low_complexity 1 48 0 1289 288 118 45 chr15 2857986 2858671 -82837083 - MER21B LTR ERV1 -128 735 1 3516 120 14 10 chr15 2858794 2859302 -82836452 - MER9 LTR ERVK -1 510 1 31286 83 6 5 chr15 2859305 2863637 -82832117 - HERVK9 LTR ERVK -2 8033 1669 2285 85 0 0 chr15 2863637 2863940 -82831814 + AluY SINE Alu 1 303 0 31286 83 6 5 chr15 2863940 2863986 -82831768 - HERVK9 LTR ERVK -6366 1669 1625 4469 101 18 21 chr15 2863986 2864650 -82831104 - HERVK9 LTR ERVK -5254 662 1 3467 99 47 12 chr15 2864650 2865144 -82830610 - MER9 LTR ERVK 0 511 1 2846 253 36 17 chr15 2865358 2866391 -82829363 - L1ME1 LINE L1 -5 6161 5006 518 273 72 36 chr15 2866842 2867201 -82828553 - L1M4c LINE L1 -2815 3567 3196 1188 244 107 46 chr15 2867202 2867831 -82827923 - L1M4c LINE L1 -3229 3153 2477 2112 139 0 0 chr15 2867831 2868126 -82827628 + AluSx SINE Alu 1 295 -17 1188 244 107 46 chr15 2868126 2868185 -82827569 - L1M4c LINE L1 -3905 2477 2423 2323 234 28 14 chr15 2868196 2868765 -82826989 - L1MD3 LINE L1 -8 7987 7411 414 294 8 0 chr15 2868769 2868888 -82826866 - MLT1F1 LTR MaLR -447 120 1 1322 240 11 35 chr15 2868889 2869260 -82826494 - L1MD3 LINE L1 -718 7277 6916 249 57 0 0 chr15 2869260 2869295 -82826459 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 167 0 0 chr15 2869411 2869459 -82826295 - L1M4c LINE L1 -4740 1823 1776 247 137 39 0 chr15 2869460 2869511 -82826243 - L1M4c LINE L1 -4701 1681 1629 380 286 25 26 chr15 2869536 2869547 -82826207 - L1M4c LINE L1 -4816 1566 1556 2236 114 0 19 chr15 2869547 2869864 -82825890 - AluY SINE Alu 0 311 1 2323 119 0 0 chr15 2869864 2870174 -82825580 - AluSq SINE Alu -3 310 1 380 286 25 26 chr15 2870174 2870361 -82825393 - L1M4c LINE L1 -4824 1558 1266 324 143 0 0 chr15 2870386 2870435 -82825319 - Alu SINE Alu -252 50 2 1910 247 84 13 chr15 2870435 2871066 -82824688 - L1MCc LINE L1 -4823 2118 1443 288 302 68 27 chr15 2871380 2871602 -82824152 - MER41B LTR ERV1 -230 405 175 300 303 10 0 chr15 2871702 2871801 -82823953 - PRIMA41-int LTR ERV1 -4 7752 7653 1966 149 0 10 chr15 2872735 2873036 -82822718 - AluSx SINE Alu -13 299 2 653 360 38 7 chr15 2873337 2873787 -82821967 - PRIMA41-int LTR ERV1 -1934 5822 5359 267 266 0 0 chr15 2874188 2874252 -82821502 - PRIMA41-int LTR ERV1 -1838 5253 5190 2009 138 0 3 chr15 2874546 2874842 -82820912 + AluSx SINE Alu 1 295 -17 2526 71 3 0 chr15 2875213 2875523 -82820231 - AluY SINE Alu 0 311 1 364 269 105 46 chr15 2875764 2875983 -82819771 - MER41B LTR ERV1 -220 415 184 822 190 0 0 chr15 2876018 2876160 -82819594 - L1PA15 LINE L1 0 6165 6024 1122 220 36 11 chr15 2876239 2876539 -82819215 - L1MCc LINE L1 -5711 711 58 500 216 36 91 chr15 2876593 2876818 -82818936 - L1MEc LINE L1 -4203 2281 2006 320 220 34 30 chr15 2876783 2876946 -82818808 + (TA)n Simple_repeat Simple_repeat 1 219 -69 * 26 74 0 0 chr15 2876946 2877000 -82818754 + AT_rich Low_complexity Low_complexity 1 54 0 320 220 34 30 chr15 2877000 2877071 -82818683 + (TA)n Simple_repeat Simple_repeat 219 288 0 274 243 45 62 chr15 2877026 2877269 -82818485 - L1MEc LINE L1 -4361 2065 1827 * 40901 34 23 2 chr15 2877272 2883296 -82812458 + L1PA3 LINE L1 2 6152 -3 24 0 0 0 chr15 2883296 2883320 -82812434 + AT_rich Low_complexity Low_complexity 1 24 0 476 246 44 60 chr15 2883328 2883576 -82812178 - L1MEc LINE L1 -4668 1939 1696 772 122 0 0 chr15 2883915 2884038 -82811716 - AluSg/x SINE Alu -1 308 186 3203 173 58 6 chr15 2884038 2884717 -82811037 - L1MA8 LINE L1 -342 5949 5194 1393 188 117 56 chr15 2884717 2884809 -82810945 + MER47B DNA MER2_type 1 86 -2237 2500 57 0 0 chr15 2884809 2885106 -82810648 - AluY SINE Alu -14 297 1 1393 188 117 56 chr15 2885106 2885407 -82810347 + MER47B DNA MER2_type 86 418 0 3203 173 58 6 chr15 2885407 2885817 -82809937 - L1MA8 LINE L1 -1097 5194 4807 1015 98 0 0 chr15 2885817 2885949 -82809805 - AluY SINE Alu -179 132 1 1242 177 24 0 chr15 2885956 2886204 -82809550 - L1MA8 LINE L1 -1330 4816 4563 520 273 147 74 chr15 2886490 2887326 -82808428 + L1M2 LINE L1 424 1403 -5446 1547 195 25 6 chr15 2887471 2887830 -82807924 - L1MA8 LINE L1 -1613 4533 4168 619 167 0 9 chr15 2887831 2887939 -82807815 + AluSq/x SINE Alu 2 108 -205 1686 126 0 4 chr15 2887939 2888178 -82807576 + AluSx SINE Alu 62 299 -13 2299 75 16 0 chr15 2888507 2888813 -82806941 - AluY SINE Alu 0 311 1 418 220 9 0 chr15 2888967 2889076 -82806678 - L1MEc LINE L1 -4110 2286 2177 239 189 0 19 chr15 2889289 2889342 -82806412 + MLT1A1 LTR MaLR 82 133 -232 2236 151 9 16 chr15 2890784 2891216 -82804538 + L1 LINE L1 4548 4976 -1170 274 226 7 55 chr15 2891331 2891477 -82804277 + (CACCC)n Simple_repeat Simple_repeat 4 142 0 391 218 23 74 chr15 2891701 2891917 -82803837 - L1MEc LINE L1 -4355 2041 1837 744 260 0 40 chr15 2891978 2892201 -82803553 - MER20 DNA MER1_type -5 214 1 295 283 0 19 chr15 2892201 2892307 -82803447 - L1MEc LINE L1 -4627 1769 1666 723 181 30 0 chr15 2892310 2892476 -82803278 - L1MB5 LINE L1 -6 6168 5998 2101 244 45 6 chr15 2892485 2893178 -82802576 - L1MB5 LINE L1 -221 5953 5230 450 160 13 173 chr15 2893182 2893407 -82802347 + L1M4 LINE L1 3718 3906 -2240 * 991 197 43 36 chr15 2893385 2893689 -82802065 - L1MCa LINE L1 -4408 2236 1931 1661 185 10 3 chr15 2893691 2893988 -82801766 - AluJb SINE Alu -2 310 12 964 223 137 42 chr15 2894041 2894404 -82801350 - L1M4 LINE L1 -496 5678 5267 1787 215 3 8 chr15 2894404 2894771 -82800983 + MLT1A1 LTR MaLR 1 365 0 964 223 137 42 chr15 2894771 2894825 -82800929 - L1M4 LINE L1 -907 5267 5220 2301 76 0 3 chr15 2894969 2895272 -82800482 - AluY SINE Alu -9 302 1 299 301 59 30 chr15 2895333 2895457 -82800297 - L1MCa LINE L1 -6298 244 110 215 31 31 0 chr15 2895457 2895489 -82800265 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 301 59 30 chr15 2895489 2895567 -82800187 - L1MCa LINE L1 -6432 110 36 347 301 36 30 chr15 2895602 2895964 -82799790 - L1MEc LINE L1 -4724 1672 1309 409 298 95 34 chr15 2896022 2896465 -82799289 - L1MEc LINE L1 -5224 1172 703 608 260 27 18 chr15 2896476 2896699 -82799055 - L1MEc LINE L1 -5728 668 444 2127 106 30 0 chr15 2896819 2897121 -82798633 - AluY SINE Alu 0 311 1 2201 129 0 3 chr15 2898198 2898508 -82797246 - AluSx SINE Alu -3 309 1 198 0 0 0 chr15 2898570 2898592 -82797162 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 324 236 126 50 chr15 2898698 2898897 -82796857 - L1MC/D LINE L1 -2338 5470 5257 2528 60 0 0 chr15 2899072 2899371 -82796383 - AluY SINE Alu -12 299 1 347 252 148 82 chr15 2899461 2899731 -82796023 - L1ME LINE L1 -347 5774 5487 2119 113 3 7 chr15 2899876 2900186 -82795568 - AluSx SINE Alu -3 309 1 189 74 0 0 chr15 2900686 2900713 -82795041 + (T)n Simple_repeat Simple_repeat 1 27 0 384 168 38 23 chr15 2901181 2901312 -82794442 + GA-rich Low_complexity Low_complexity 2 134 0 293 274 43 26 chr15 2901415 2901532 -82794222 + MIR SINE MIR 50 168 -94 214 135 19 19 chr15 2901669 2901721 -82794033 + T-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr15 2901818 2901847 -82793907 + AT_rich Low_complexity Low_complexity 1 29 0 302 311 79 66 chr15 2902168 2902486 -82793268 - L1ME4a LINE L1 -199 5922 5601 22 0 0 0 chr15 2903022 2903044 -82792710 + AT_rich Low_complexity Low_complexity 1 22 0 390 195 8 24 chr15 2904012 2904135 -82791619 - L1MC/D LINE L1 -1709 4437 4317 2285 231 89 16 chr15 2904143 2904885 -82790869 - L1MD1 LINE L1 -19 6223 5428 573 203 152 0 chr15 2904896 2905034 -82790720 - AluJo SINE Alu -6 296 138 311 154 0 0 chr15 2905070 2905122 -82790632 - AluJo SINE Alu -168 134 83 950 149 37 80 chr15 2905123 2905201 -82790553 - AluJo SINE Alu -132 180 100 1740 48 5 0 chr15 2905201 2905410 -82790344 + AluY SINE Alu 102 311 0 950 149 37 80 chr15 2905410 2905519 -82790235 - AluJo SINE Alu -212 100 1 1208 227 52 44 chr15 2905519 2905702 -82790052 - L1MD1 LINE L1 -743 5403 5223 5884 21 0 0 chr15 2905702 2906378 -82789376 - L1PA3 LINE L1 -2 6153 5478 1208 227 52 44 chr15 2906378 2906865 -82788889 - L1MD1 LINE L1 -923 5223 4769 856 168 0 66 chr15 2906873 2907023 -82788731 - L1MB7 LINE L1 -16 6168 6032 2099 133 0 0 chr15 2907023 2907325 -82788429 + AluSx SINE Alu 1 302 -10 856 168 0 66 chr15 2907325 2907370 -82788384 - L1MB7 LINE L1 -152 6032 5986 342 177 0 0 chr15 2907370 2907432 -82788322 - AluJ/FLAM SINE Alu -240 62 1 997 226 75 81 chr15 2907432 2907579 -82788175 - L1M4 LINE L1 -958 5424 5278 188 35 35 0 chr15 2907579 2907608 -82788146 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 997 226 75 81 chr15 2907608 2908096 -82787658 - L1M4 LINE L1 -1104 5278 4791 1578 239 23 8 chr15 2908096 2908486 -82787268 - MSTD LTR MaLR 0 396 1 997 226 75 81 chr15 2908486 2908552 -82787202 - L1M4 LINE L1 -1591 4791 4726 2629 176 41 9 chr15 2908558 2909097 -82786657 - L1PA16 LINE L1 -2 6164 5609 897 196 18 5 chr15 2909099 2909318 -82786436 + L1 LINE L1 4368 4589 -1557 4804 256 75 17 chr15 2909321 2910624 -82785130 - L1M4 LINE L1 -1653 4729 3503 2231 113 0 3 chr15 2910624 2910925 -82784829 - AluSq SINE Alu -13 300 1 4804 256 75 17 chr15 2910925 2911997 -82783757 - L1M4 LINE L1 -2879 3503 2221 517 192 8 0 chr15 2912001 2912131 -82783623 - L1MA4A LINE L1 -5 6298 6168 572 81 23 0 chr15 2912137 2912223 -82783531 - L1MA1 LINE L1 -4 6298 6211 2519 83 0 0 chr15 2912223 2912574 -82783180 + L1M1 LINE L1 5429 5779 -525 1034 181 48 4 chr15 2912567 2912794 -82782960 - L1MA4 LINE L1 -118 6182 5946 * 21 71 0 0 chr15 2912794 2912836 -82782918 + AT_rich Low_complexity Low_complexity 1 42 0 2385 86 0 10 chr15 2912912 2913225 -82782529 - AluY SINE Alu -1 310 1 385 41 0 0 chr15 2913249 2913298 -82782456 - L1PA7 LINE L1 -8 6146 6098 2009 107 13 0 chr15 2913298 2913596 -82782158 + L1P3 LINE L1 5427 5728 -426 3430 157 26 26 chr15 2913611 2914012 -82781742 - L1MA4 LINE L1 -359 5941 5541 2648 20 0 0 chr15 2914012 2914310 -82781444 - AluYa5 SINE Alu -13 298 1 3430 157 26 26 chr15 2914310 2914794 -82780960 - L1MA4 LINE L1 -759 5541 5054 1954 129 0 0 chr15 2914794 2915057 -82780697 - AluSx SINE Alu -16 296 34 3430 157 26 26 chr15 2915057 2915120 -82780634 - L1MA4 LINE L1 -1246 5054 4992 22 35 0 0 chr15 2915134 2915163 -82780591 + AT_rich Low_complexity Low_complexity 1 29 0 1720 116 0 0 chr15 2915163 2915388 -82780366 - AluSc SINE Alu -27 282 58 395 285 5 24 chr15 2915393 2915600 -82780154 - L1M4c LINE L1 -4182 2202 2000 1761 280 50 30 chr15 2915608 2916548 -82779206 - L1M4 LINE L1 -1554 5294 4336 1781 244 42 72 chr15 2916559 2916705 -82779049 + MER77 LTR ERV1 1 150 -455 2435 83 0 3 chr15 2916705 2917017 -82778737 - AluY SINE Alu 0 311 1 1781 244 42 72 chr15 2917017 2917485 -82778269 + MER77 LTR ERV1 150 597 -8 205 138 0 0 chr15 2917555 2917584 -82778170 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1233 326 14 15 chr15 2917584 2918176 -82777578 + MER21-int LTR ERV1 3079 3669 -3089 1479 227 47 31 chr15 2918176 2919001 -82776753 - L1M4 LINE L1 -3415 3433 2598 260 98 0 39 chr15 2919006 2919057 -82776697 - Alu SINE Alu 0 300 252 2214 194 10 12 chr15 2919071 2919587 -82776167 - L1M4 LINE L1 -4916 1933 1419 229 300 0 0 chr15 2919673 2919733 -82776021 + L1M2b LINE L1 679 738 -6471 815 307 86 79 chr15 2919797 2920913 -82774841 - L1M4 LINE L1 -5446 1403 280 594 311 10 19 chr15 2921092 2921298 -82774456 + MER21-int LTR ERV1 1669 1872 -2319 2312 76 0 45 chr15 2921369 2921683 -82774071 - AluY SINE Alu -10 301 2 222 191 0 0 chr15 2921883 2921930 -82773824 + (CA)n Simple_repeat Simple_repeat 2 48 0 2038 158 3 0 chr15 2921952 2922263 -82773491 - AluSx SINE Alu 0 312 1 2263 172 17 2 chr15 2922683 2923091 -82772663 - MSTB1 LTR MaLR -15 417 4 2955 280 40 68 chr15 2923454 2923774 -82771980 + MER21-int LTR ERV1 2014 2341 -1850 3661 110 178 0 chr15 2923774 2924358 -82771396 + LTR12 LTR ERV1 1 688 0 2955 280 40 68 chr15 2924358 2925474 -82770280 + MER21-int LTR ERV1 2341 3410 -781 367 287 17 6 chr15 2925494 2925668 -82770086 - L1M4 LINE L1 -3229 2917 2742 3375 191 20 26 chr15 2925819 2926610 -82769144 + L1MB3 LINE L1 5397 6182 -1 182 387 91 5 chr15 2926741 2926927 -82768827 - L2 LINE L2 -2298 1016 815 22 0 0 0 chr15 2929637 2929659 -82766095 + AT_rich Low_complexity Low_complexity 1 22 0 3557 189 52 14 chr15 2930876 2931644 -82764110 - L1MC3 LINE L1 -1677 6526 5730 1498 192 15 4 chr15 2931681 2931940 -82763814 + Tigger7 DNA MER2_type 59 320 -413 2360 187 30 117 chr15 2931940 2932582 -82763172 - LTR8 LTR ERV1 0 691 -5 2758 88 6 30 chr15 2932582 2932817 -82762937 + THE1A LTR MaLR 1 225 -130 2510 67 0 0 chr15 2932817 2933114 -82762640 + AluY SINE Alu 1 297 -14 2758 88 6 30 chr15 2933114 2933242 -82762512 + THE1A LTR MaLR 225 355 0 12047 96 7 13 chr15 2933242 2934831 -82760923 + THE1A-int LTR MaLR 1 1580 0 2784 93 6 0 chr15 2934831 2935184 -82760570 + THE1A LTR MaLR 1 355 0 2360 187 30 117 chr15 2935184 2935292 -82760462 - LTR8 LTR ERV1 -571 120 4 1104 131 47 0 chr15 2935293 2935484 -82760270 + Tigger7 DNA MER2_type 315 514 -219 452 221 0 0 chr15 2935506 2935592 -82760162 + Tigger7 DNA MER2_type 2501 2586 -1 744 241 19 6 chr15 2935645 2935803 -82759951 - AluJb SINE Alu -151 161 2 477 257 62 24 chr15 2935807 2936017 -82759737 - L1MC3 LINE L1 -878 5686 5469 1183 83 25 0 chr15 2936023 2936180 -82759574 - MLT2A2 LTR ERVL 0 453 293 1915 131 37 7 chr15 2936228 2936526 -82759228 - MLT2A2 LTR ERVL -145 308 2 402 191 22 226 chr15 2936526 2936661 -82759093 - L1MC3 LINE L1 -1096 5468 5434 2092 131 3 0 chr15 2936661 2936952 -82758802 - AluSq SINE Alu -21 292 1 402 191 22 226 chr15 2936952 2937135 -82758619 - L1MC3 LINE L1 -1130 5434 5215 3318 255 76 50 chr15 2937466 2938149 -82757605 - L1MC3 LINE L1 -1336 5228 4564 4901 15 0 2 chr15 2938149 2938673 -82757081 + L1PA3 LINE L1 5629 6151 -4 3318 255 76 50 chr15 2938673 2939483 -82756271 - L1MC3 LINE L1 -2000 4564 3697 268 230 10 115 chr15 2939549 2939749 -82756005 - L1MC3 LINE L1 -4892 1672 1494 315 203 14 72 chr15 2939862 2940000 -82755754 - L1MC3 LINE L1 -5145 1419 1290 11395 202 19 19 chr15 2940001 2941527 -82754227 - L1PA16 LINE L1 -3 6163 4639 2066 161 30 25 chr15 2941527 2941888 -82753866 + THE1B LTR MaLR 1 363 -1 11395 202 19 19 chr15 2941888 2942152 -82753602 - L1PA16 LINE L1 -1527 4639 4377 2504 66 0 0 chr15 2942152 2942454 -82753300 - AluY SINE Alu -9 302 1 11395 202 19 19 chr15 2942454 2944349 -82751405 - L1PA16 LINE L1 -1789 4377 2482 656 265 100 0 chr15 2944490 2944739 -82751015 - L1MEc LINE L1 -3676 2453 2180 * 1866 233 72 39 chr15 2944718 2944744 -82751010 - L1MC3 LINE L1 -4849 1196 1172 698 159 0 0 chr15 2944744 2944851 -82750903 - U6 snRNA snRNA 0 107 1 1866 233 72 39 chr15 2944851 2945586 -82750168 - L1MC3 LINE L1 -4873 1172 539 288 336 19 0 chr15 2945726 2945833 -82749921 - L1MC3 LINE L1 -5612 433 325 397 286 35 35 chr15 2945979 2946178 -82749576 + L1ME2 LINE L1 4967 5165 -981 1805 274 114 16 chr15 2946206 2947010 -82748744 + L1ME2 LINE L1 5281 6163 -1 3110 175 44 39 chr15 2949573 2949927 -82745827 - L1MC3 LINE L1 -31 7754 7392 1814 141 7 14 chr15 2949927 2950231 -82745523 - AluSx SINE Alu 0 304 3 3110 175 44 39 chr15 2950231 2950550 -82745204 - L1MC3 LINE L1 -393 7392 7076 2162 117 0 0 chr15 2950933 2951224 -82744530 + AluSx SINE Alu 1 291 -21 327 293 151 42 chr15 2951766 2952005 -82743749 - MLT1I LTR MaLR -19 390 126 1079 162 50 10 chr15 2952110 2952308 -82743446 - MLT1I-int LTR MaLR -170 1565 1360 341 229 20 27 chr15 2952304 2952416 -82743338 - L1MEc LINE L1 -4891 1690 1572 * 420 299 92 56 chr15 2954222 2954506 -82741248 - MLT1I LTR MaLR -18 391 98 245 244 89 22 chr15 2955767 2955857 -82739897 + MER114 LTR ERV 3 98 -550 21 0 0 0 chr15 2955866 2955887 -82739867 + AT_rich Low_complexity Low_complexity 1 21 0 325 224 53 118 chr15 2956106 2956258 -82739496 + L1ME2 LINE L1 1235 1525 -4891 * 1784 199 50 8 chr15 2956254 2956615 -82739139 + MLT1A1-int LTR MaLR 1360 1735 0 1128 247 117 6 chr15 2956620 2956944 -82738810 + MLT1A1 LTR MaLR 6 365 0 445 331 53 34 chr15 2957040 2957360 -82738394 + L1ME2 LINE L1 2069 2394 -4213 1135 250 117 27 chr15 2957683 2958318 -82737436 + L1ME2 LINE L1 4661 5352 -1074 1281 202 98 12 chr15 2958656 2958983 -82736771 + L1ME2 LINE L1 6069 6423 -21 21 0 0 0 chr15 2959318 2959339 -82736415 + AT_rich Low_complexity Low_complexity 1 21 0 518 221 130 10 chr15 2959350 2959558 -82736196 - MER114 LTR ERV -274 374 142 591 287 66 25 chr15 2960289 2960533 -82735221 - MIR SINE MIR -8 254 1 499 275 8 0 chr15 2962117 2962237 -82733517 + L1MC4a LINE L1 6607 6727 -1081 804 120 0 0 chr15 2962287 2962395 -82733359 + AluSp/q SINE Alu 174 281 -32 294 50 0 0 chr15 2962395 2962435 -82733319 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 1250 189 22 76 chr15 2962435 2962790 -82732964 + L1MD3 LINE L1 6783 7118 -877 608 242 110 11 chr15 2962799 2962981 -82732773 - MLT1G LTR MaLR -72 518 319 2713 176 54 12 chr15 2962996 2963571 -82732183 + L1MD3 LINE L1 7397 7995 0 1027 227 78 34 chr15 2963576 2963933 -82731821 + L1ME1 LINE L1 5790 6162 -4 284 143 18 0 chr15 2963934 2963990 -82731764 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 733 277 170 63 chr15 2964027 2964855 -82730899 + L1MC4 LINE L1 7124 8040 -2 4071 170 28 66 chr15 2966205 2966664 -82729090 + L1MA7 LINE L1 4548 5023 -1268 1847 137 32 3 chr15 2966664 2966948 -82728806 + AluSx SINE Alu 1 292 -20 4071 170 28 66 chr15 2966948 2967088 -82728666 + L1MA7 LINE L1 5023 5167 -1124 2269 96 7 0 chr15 2967088 2967390 -82728364 + AluSg SINE Alu 1 304 -6 4071 170 28 66 chr15 2967390 2968614 -82727140 + L1MA7 LINE L1 5167 6291 0 2477 156 36 7 chr15 2969538 2969954 -82725800 - MSTA LTR MaLR 0 428 1 4060 117 93 127 chr15 2970037 2971462 -82724292 + pTR5 LTR ERV1 743 2438 0 358 276 48 9 chr15 2971562 2971667 -82724087 + MER5A DNA MER1_type 59 167 -22 286 205 167 0 chr15 2972281 2972359 -82723395 - MLT1J2 LTR MaLR -288 162 72 3093 46 0 6 chr15 2972732 2973074 -82722680 - L1PA3 LINE L1 0 6155 5814 2307 94 3 0 chr15 2973074 2973362 -82722392 + AluSp SINE Alu 1 289 -24 3093 46 0 6 chr15 2973362 2973385 -82722369 - L1PA3 LINE L1 -341 5814 5792 2216 133 6 14 chr15 2973385 2973719 -82722035 - L1PB1 LINE L1 -6 6145 5804 1326 203 45 19 chr15 2974159 2974500 -82721254 + L1MA8 LINE L1 5685 6256 -35 * 2261 192 46 2 chr15 2974460 2974919 -82720835 + L1PA16 LINE L1 5685 6163 -3 21 0 0 0 chr15 2974971 2974992 -82720762 + AT_rich Low_complexity Low_complexity 1 21 0 192 27 81 0 chr15 2976656 2976693 -82719061 + T-rich Low_complexity Low_complexity 2 41 0 358 244 70 13 chr15 2977342 2977498 -82718256 + MER104 DNA Tc2 15 179 -1 1629 183 3 14 chr15 2978995 2979285 -82716469 + AluJb SINE Alu 1 287 -25 629 177 0 0 chr15 2979508 2979604 -82716150 + AluJb SINE Alu 192 287 -25 438 114 0 0 chr15 2979607 2979677 -82716077 + (GGA)n Simple_repeat Simple_repeat 3 72 0 212 329 0 14 chr15 2979871 2980011 -82715743 + (TG)n Simple_repeat Simple_repeat 1 138 0 560 323 57 37 chr15 2980270 2980620 -82715134 + L1M4 LINE L1 4757 5113 -1033 314 322 17 9 chr15 2980748 2980863 -82714891 + MIR SINE MIR 140 255 -7 840 272 74 25 chr15 2980904 2981349 -82714405 - HsTC2 DNA Tc2 -23 1875 1233 993 194 43 8 chr15 2984081 2984339 -82711415 - L1MD3 LINE L1 -1 7994 7728 478 277 121 32 chr15 2984345 2984798 -82710956 - MLT1E LTR MaLR 0 593 30 596 190 16 0 chr15 2984829 2984950 -82710804 - L1MD3 LINE L1 -308 7687 7565 984 161 14 14 chr15 2984993 2985204 -82710550 + L1 LINE L1 4730 4940 -1206 * 1678 243 77 30 chr15 2985199 2985851 -82709903 - L1MC3 LINE L1 -86 6080 5882 1625 216 32 13 chr15 2985920 2986383 -82709371 - L1MC3 LINE L1 -1256 4890 4419 1780 127 71 4 chr15 2986383 2986651 -82709103 + AluSc SINE Alu 22 307 -2 1544 118 33 4 chr15 2986651 2986921 -82708833 - L1MA2 LINE L1 -136 7128 6851 4924 77 29 1 chr15 2986921 2987741 -82708013 - MER11D LTR ERVK 0 897 6 1560 129 0 0 chr15 2987745 2987993 -82707761 - L1MA2 LINE L1 -409 6856 6609 1784 185 52 54 chr15 2987993 2988496 -82707258 + L1 LINE L1 4871 5372 -774 2230 165 55 32 chr15 2988503 2988698 -82707056 - Tigger1 DNA MER2_type -1935 483 294 1781 178 0 13 chr15 2988698 2989007 -82706747 - AluSx SINE Alu -7 305 1 2230 165 55 32 chr15 2989007 2989283 -82706471 - Tigger1 DNA MER2_type -2124 294 1 3310 184 31 16 chr15 2989286 2990118 -82705636 - L1MA2 LINE L1 -657 6603 5747 2255 112 3 3 chr15 2990118 2990423 -82705331 - AluSp SINE Alu -8 305 1 3310 184 31 16 chr15 2990423 2990697 -82705057 - L1MA2 LINE L1 -1513 5747 5479 573 175 73 58 chr15 2990701 2990878 -82704876 - L1MA2 LINE L1 -3717 3389 3207 2519 47 3 0 chr15 2990878 2991177 -82704577 - AluY SINE Alu -11 300 1 573 175 73 58 chr15 2991177 2991205 -82704549 - L1MA2 LINE L1 -3899 3207 3181 336 195 0 61 chr15 2991211 2991293 -82704461 - L1MA2 LINE L1 -5143 1887 1811 1328 308 16 29 chr15 2991419 2991965 -82703789 - L1MA2 LINE L1 -6439 591 53 573 28 0 0 chr15 2991965 2992036 -82703718 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 24 67 0 0 chr15 2992036 2992081 -82703673 + AT_rich Low_complexity Low_complexity 1 45 0 1049 242 16 3 chr15 2992119 2992429 -82703325 - L1M4 LINE L1 -1747 4399 4086 638 217 0 0 chr15 2992533 2992662 -82703092 - AluJb SINE Alu 0 312 184 1260 130 10 0 chr15 2992919 2993111 -82702643 - AluSq SINE Alu -119 194 1 1876 197 33 38 chr15 2993113 2994311 -82701443 - L1MB1 LINE L1 -39 6129 4788 749 219 84 113 chr15 2994364 2994779 -82700975 - L1MD3 LINE L1 -1107 6888 6486 300 89 18 0 chr15 2996119 2996175 -82699579 - L1MB8 LINE L1 0 6178 6122 959 215 45 78 chr15 2996289 2996586 -82699168 - L1MB8 LINE L1 -25 6153 5848 2244 93 3 0 chr15 2996586 2996876 -82698878 + AluSg SINE Alu 1 291 -19 959 215 45 78 chr15 2996876 2996918 -82698836 - L1MB8 LINE L1 -330 5848 5826 1449 200 6 72 chr15 2996918 2997238 -82698516 - AluJb SINE Alu -13 299 1 959 215 45 78 chr15 2997238 2997297 -82698457 - L1MB8 LINE L1 -352 5826 5767 1337 227 42 62 chr15 2997402 2998001 -82697753 - L1M4 LINE L1 -2242 3904 3318 656 265 29 23 chr15 2998271 2998622 -82697132 - L1MCa LINE L1 -5711 334 2 715 230 22 0 chr15 2998624 2998802 -82696952 - L1MD3 LINE L1 -419 7576 7395 289 262 75 37 chr15 2998807 2998914 -82696840 - MLT1F1 LTR MaLR -456 111 1 562 298 21 0 chr15 2998920 2999111 -82696643 - L1MD3 LINE L1 -727 7268 7074 1992 112 10 10 chr15 2999171 2999466 -82696288 - AluY SINE Alu -16 295 1 1160 152 28 5 chr15 2999467 2999684 -82696070 - L1MB8 LINE L1 -479 5705 5484 3257 182 95 33 chr15 2999881 3000076 -82695678 - L1MB3 LINE L1 -1 6182 6000 1835 155 7 17 chr15 3000076 3000373 -82695381 - AluJo SINE Alu -18 294 1 3257 182 95 33 chr15 3000373 3000991 -82694763 - L1MB3 LINE L1 -183 6000 5319 248 160 13 27 chr15 3001109 3001184 -82694570 + L1ME1 LINE L1 5293 5366 -2629 2142 71 0 0 chr15 3001924 3002191 -82693563 - AluY SINE Alu -43 268 2 2398 125 17 3 chr15 3002421 3002780 -82692974 - THE1B LTR MaLR 0 364 1 1294 243 133 41 chr15 3002896 3003436 -82692318 - MLT1G LTR MaLR 0 590 1 4571 158 23 33 chr15 3003530 3004977 -82690777 - L1MA8 LINE L1 -5 6286 4855 322 294 33 39 chr15 3005615 3005768 -82689986 + MLT1I LTR MaLR 250 401 -8 318 50 0 0 chr15 3005890 3005930 -82689824 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 * 972 49 0 0 chr15 3005929 3006051 -82689703 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1879 137 6 29 chr15 3006086 3006400 -82689354 - AluSg SINE Alu -3 307 1 2019 119 11 0 chr15 3006648 3006926 -82688828 + AluSx SINE Alu 1 281 -31 227 241 21 21 chr15 3007099 3007240 -82688514 + (TTGTG)n Simple_repeat Simple_repeat 1 141 0 2532 56 10 3 chr15 3007745 3008049 -82687705 + AluY SINE Alu 1 306 -5 919 278 39 30 chr15 3008074 3008480 -82687274 + L1ME1 LINE L1 5550 5959 -207 432 0 0 0 chr15 3008826 3008874 -82686880 + (CA)n Simple_repeat Simple_repeat 2 49 0 1715 133 98 11 chr15 3009035 3009320 -82686434 - AluSx SINE Alu -2 310 1 270 0 0 0 chr15 3009329 3009359 -82686395 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2477 183 17 17 chr15 3009470 3009996 -82685758 + L1PA16 LINE L1 5625 6150 -16 1103 222 19 12 chr15 3010014 3010338 -82685416 - L1MB3 LINE L1 -798 5348 5023 * 3486 129 5 7 chr15 3010311 3010907 -82684847 - L1P LINE L1 -849 5297 4703 1308 209 13 7 chr15 3010905 3011206 -82684548 - L1MB3 LINE L1 -1898 4248 3946 * 3867 172 7 12 chr15 3011259 3012008 -82683746 + L1PB4 LINE L1 5411 6155 -1 1102 265 21 9 chr15 3012010 3012148 -82683606 - L1MB8 LINE L1 -55 6123 5988 1688 169 14 3 chr15 3012148 3012310 -82683444 - AluSx SINE Alu -19 293 125 378 57 0 0 chr15 3012310 3012363 -82683391 + (TG)n Simple_repeat Simple_repeat 2 54 0 1688 169 14 3 chr15 3012363 3012490 -82683264 - AluSx SINE Alu -187 125 1 1102 265 21 9 chr15 3012490 3012728 -82683026 - L1MB8 LINE L1 -190 5988 5746 593 300 113 32 chr15 3013155 3013650 -82682104 + L1ME1 LINE L1 37 419 -5278 2429 90 0 6 chr15 3013650 3013962 -82681792 + AluSp SINE Alu 1 310 -3 593 300 113 32 chr15 3013962 3014289 -82681465 + L1ME1 LINE L1 419 718 -4979 2450 266 59 13 chr15 3014319 3015158 -82680596 + L1ME1 LINE L1 4270 5187 -1048 642 121 0 17 chr15 3015158 3015274 -82680480 - L1PA13 LINE L1 0 6163 6050 2450 266 59 13 chr15 3015274 3015800 -82679954 + L1ME1 LINE L1 5187 5687 -548 1131 256 66 5 chr15 3015807 3016218 -82679536 + L1ME1 LINE L1 5785 6220 -15 21 0 0 0 chr15 3016281 3016302 -82679452 + AT_rich Low_complexity Low_complexity 1 21 0 4920 167 119 7 chr15 3016303 3017823 -82677931 - L1MA6 LINE L1 -4 6296 4539 210 23 70 23 chr15 3017823 3017866 -82677888 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4920 167 119 7 chr15 3017866 3018098 -82677656 - L1MA6 LINE L1 -1761 4539 4334 698 117 55 6 chr15 3020179 3020342 -82675412 + GA-rich Low_complexity Low_complexity 2 172 0 970 270 62 75 chr15 3021160 3021786 -82673968 + L1ME LINE L1 78 695 -5375 22 0 0 0 chr15 3022088 3022110 -82673644 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 39 0 chr15 3022331 3022382 -82673372 + (TG)n Simple_repeat Simple_repeat 2 54 0 453 224 28 7 chr15 3022497 3022640 -82673114 - L1ME3A LINE L1 -31 6139 5994 263 298 53 57 chr15 3023407 3023635 -82672119 - L2 LINE L2 -1285 2029 1803 374 313 144 23 chr15 3025945 3026201 -82669553 - L1MC4a LINE L1 -1962 5846 5560 522 303 117 36 chr15 3026791 3027433 -82668321 - L2 LINE L2 0 3313 2579 1461 183 14 21 chr15 3028043 3028328 -82667426 + AluJo SINE Alu 20 302 -10 383 229 92 0 chr15 3029299 3029408 -82666346 + MER5A DNA MER1_type 52 170 -19 460 346 79 31 chr15 3029979 3030398 -82665356 - L2 LINE L2 -678 2636 2198 807 34 61 0 chr15 3030841 3030989 -82664765 + (TA)n Simple_repeat Simple_repeat 2 158 0 251 187 243 37 chr15 3031033 3031140 -82664614 - MLT1H LTR MaLR -9 540 412 270 347 100 20 chr15 3031512 3031763 -82663991 - L2 LINE L2 -1185 2129 1859 317 244 49 0 chr15 3032670 3032752 -82663002 - L1MC4 LINE L1 -16 8026 7941 1778 251 153 6 chr15 3032873 3033658 -82662096 - L1MC4 LINE L1 -144 7898 6999 442 211 28 20 chr15 3033655 3034283 -82661471 - L1MC3 LINE L1 0 7785 6139 * 239 273 34 0 chr15 3034283 3034371 -82661383 - MLT1F1 LTR MaLR -442 125 35 260 169 15 15 chr15 3034395 3034460 -82661294 - L1MC4a LINE L1 -930 6878 6814 2368 50 3 0 chr15 3035608 3035891 -82659863 - AluY SINE Alu -24 287 4 264 232 12 0 chr15 3036065 3036147 -82659607 + (TA)n Simple_repeat Simple_repeat 1 83 0 2044 115 3 7 chr15 3036443 3036738 -82659016 + AluSq SINE Alu 1 294 -19 216 324 81 37 chr15 3039290 3039426 -82656328 - MIR SINE MIR -110 152 11 263 281 52 72 chr15 3039481 3039787 -82655967 - L1ME LINE L1 -279 5842 5543 198 351 0 0 chr15 3040564 3040638 -82655116 + MIR SINE MIR 188 261 -1 313 188 12 12 chr15 3041316 3041396 -82654358 - L1MD3 LINE L1 -86 7909 7830 587 72 0 0 chr15 3041396 3041479 -82654275 - Alu SINE Alu -6 303 221 5255 101 95 1 chr15 3041606 3042361 -82653393 + LTR12 LTR ERV1 1 826 0 2267 85 0 13 chr15 3042397 3042702 -82653052 - AluY SINE Alu -10 301 1 1840 283 107 26 chr15 3042872 3043932 -82651822 - L1MEc LINE L1 -5138 1258 114 2199 194 33 5 chr15 3044449 3044898 -82650856 + L1PA15 LINE L1 5704 6165 0 337 196 41 0 chr15 3046995 3047092 -82648662 - L1MCa LINE L1 -3024 3402 3302 881 196 41 21 chr15 3047094 3047411 -82648343 - L1MCa LINE L1 -3963 2463 2247 779 198 211 0 chr15 3047429 3047676 -82648078 + L1MCa LINE L1 1921 2219 -4207 624 260 51 23 chr15 3047676 3047989 -82647765 - MLT1E LTR MaLR -248 345 1 398 230 25 93 chr15 3047993 3048078 -82647676 - L1MD3 LINE L1 -282 7713 7643 2171 93 0 10 chr15 3048078 3048368 -82647386 - AluY SINE Alu -11 300 14 398 230 25 93 chr15 3048368 3048443 -82647311 - L1MD3 LINE L1 -352 7643 7564 3955 220 101 75 chr15 3048636 3048857 -82646897 - L1MC2 LINE L1 -3 7770 7556 1772 141 0 4 chr15 3048857 3049126 -82646628 - AluY SINE Alu -13 298 31 3955 220 101 75 chr15 3049126 3049356 -82646398 - L1MC2 LINE L1 -217 7556 7334 3719 113 143 2 chr15 3049356 3049959 -82645795 - LTR12 LTR ERV1 0 688 1 3955 220 101 75 chr15 3049959 3050136 -82645618 - L1MC2 LINE L1 -439 7334 7163 2171 110 3 3 chr15 3050136 3050437 -82645317 + AluY SINE Alu 1 301 -10 3955 220 101 75 chr15 3050437 3051461 -82644293 - L1MC2 LINE L1 -610 7163 6097 2358 85 10 0 chr15 3051461 3051756 -82643998 + AluSx SINE Alu 1 298 -14 3955 220 101 75 chr15 3051756 3052007 -82643747 - L1MC2 LINE L1 -1676 6097 5854 3621 215 52 32 chr15 3052007 3053382 -82642372 - L1MC2 LINE L1 -720 5454 4044 782 232 29 79 chr15 3053451 3053708 -82642046 - L1MC2 LINE L1 -2302 3844 3607 185 0 40 0 chr15 3053708 3053733 -82642021 + (TTG)n Simple_repeat Simple_repeat 2 27 0 782 232 29 79 chr15 3053733 3053815 -82641939 - L1MC2 LINE L1 -2539 3607 3522 352 241 46 8 chr15 3053817 3054004 -82641750 + MLT1E LTR MaLR 346 585 -8 830 202 51 20 chr15 3054007 3054260 -82641494 + L1MD3 LINE L1 7721 7981 -14 1490 190 64 39 chr15 3056223 3056613 -82639141 - MSTB1 LTR MaLR 0 432 33 2327 87 3 22 chr15 3056614 3056925 -82638829 - AluSp SINE Alu -8 305 1 2588 214 33 48 chr15 3056926 3057015 -82638739 + MER54A LTR ERVL 188 277 -624 2147 137 0 6 chr15 3057015 3057328 -82638426 - AluSx SINE Alu -1 311 1 2588 214 33 48 chr15 3057328 3057963 -82637791 + MER54A LTR ERVL 277 901 0 2198 96 3 3 chr15 3058074 3058367 -82637387 + AluSc SINE Alu 1 293 -16 627 290 69 35 chr15 3058578 3059030 -82636724 + HsTC2 DNA Tc2 1233 1875 -23 2086 105 54 0 chr15 3059344 3059638 -82636116 + AluSx SINE Alu 1 310 -2 482 262 142 21 chr15 3059690 3059857 -82635897 - L1M4 LINE L1 -1125 5021 4817 333 0 0 0 chr15 3059857 3059894 -82635860 + (TG)n Simple_repeat Simple_repeat 2 38 0 482 262 142 21 chr15 3059894 3059959 -82635795 - L1M4 LINE L1 -1329 4817 4761 884 191 7 0 chr15 3061756 3061903 -82633851 - FRAM SINE Alu -30 146 1 2145 100 0 33 chr15 3062794 3063095 -82632659 - AluSc SINE Alu -18 291 1 464 316 82 9 chr15 3063296 3063527 -82632227 - L1MEc LINE L1 -6083 313 66 2232 91 10 0 chr15 3063698 3063995 -82631759 + AluSx SINE Alu 1 300 -12 1385 104 79 5 chr15 3064343 3064545 -82631209 - AluSc SINE Alu -12 297 81 266 252 117 27 chr15 3064568 3064679 -82631075 - HsTC2 DNA Tc2 -546 1352 1232 221 197 26 40 chr15 3065778 3065854 -82629900 + L2 LINE L2 2427 2501 -813 2073 81 34 10 chr15 3066306 3066652 -82629102 - AluSq SINE Alu 0 353 1 528 89 125 54 chr15 3066751 3066863 -82628891 - AluSc SINE Alu 0 309 190 930 101 0 0 chr15 3066863 3066982 -82628772 - AluSq SINE Alu -159 154 36 962 291 42 13 chr15 3067313 3067856 -82627898 - L1M4 LINE L1 -3204 2942 2384 487 192 96 25 chr15 3067904 3068102 -82627652 + L1MCa LINE L1 2008 2219 -4207 353 295 180 25 chr15 3068104 3068304 -82627450 - MLT1E LTR MaLR -250 343 113 6666 19 0 0 chr15 3068326 3069125 -82626629 - L1PA3 LINE L1 0 6155 5357 319 255 9 38 chr15 3069126 3069232 -82626522 - MLT1E LTR MaLR -487 106 4 668 189 26 46 chr15 3069238 3069391 -82626363 - L1MD3 LINE L1 -281 7714 7565 1785 74 0 41 chr15 3069583 3069827 -82625927 - AluY SINE Alu -6 305 72 5028 232 91 34 chr15 3069875 3071743 -82624011 - L1MC2 LINE L1 0 7772 5835 269 188 12 75 chr15 3071724 3071767 -82623987 - L1MC2 LINE L1 -788 5454 5417 * 2037 202 34 7 chr15 3071767 3072182 -82623572 - MSTB LTR MaLR 0 426 1 269 188 12 75 chr15 3072182 3072218 -82623536 - L1MC2 LINE L1 -825 5417 5380 * 1084 241 69 11 chr15 3072213 3072590 -82623164 - L1MC2 LINE L1 -1008 5138 4740 467 118 0 0 chr15 3072590 3072658 -82623096 - AluJ/FLAM SINE Alu -217 95 28 542 179 9 127 chr15 3072662 3072891 -82622863 - L1MC2 LINE L1 -1446 4700 4499 888 177 0 0 chr15 3072920 3073061 -82622693 - FRAM SINE Alu -35 141 1 22 0 0 0 chr15 3073069 3073091 -82622663 + AT_rich Low_complexity Low_complexity 1 22 0 3980 137 46 29 chr15 3073148 3073909 -82621845 - LTR1 LTR ERV1 -11 774 1 736 235 20 44 chr15 3073912 3074163 -82621591 - L1MC2 LINE L1 -2383 3763 3519 392 220 53 53 chr15 3074213 3074363 -82621391 + MLT1E LTR MaLR 475 593 0 969 221 27 8 chr15 3074365 3074627 -82621127 + L1MD3 LINE L1 7724 7990 -5 2224 103 20 0 chr15 3075266 3075566 -82620188 + AluSg SINE Alu 1 306 -4 1635 129 20 106 chr15 3077335 3077470 -82618284 + AluYb8 SINE Alu 1 146 -172 2017 105 51 10 chr15 3077470 3077764 -82617990 + AluSc SINE Alu 1 306 -3 1635 129 20 106 chr15 3077764 3077969 -82617785 + AluYb8 SINE Alu 146 312 -6 4329 198 38 8 chr15 3077984 3078859 -82616895 + MER54A LTR ERVL 1 901 0 273 321 36 0 chr15 3079075 3079187 -82616567 + HsTC2 DNA Tc2 35 150 -1748 * 611 293 75 35 chr15 3079186 3079637 -82616117 + HsTC2 DNA Tc2 1231 1875 -23 317 358 137 4 chr15 3079674 3079900 -82615854 - MIR SINE MIR 0 262 7 277 262 158 32 chr15 3080011 3080232 -82615522 - L1M4 LINE L1 -1125 5021 4773 29 0 0 0 chr15 3082239 3082268 -82613486 + AT_rich Low_complexity Low_complexity 1 29 0 393 315 108 22 chr15 3083039 3083271 -82612483 - L1MEc LINE L1 -6083 313 62 282 305 99 21 chr15 3084219 3084360 -82611394 - MIR SINE MIR -1 261 110 2067 158 3 0 chr15 3084388 3084691 -82611063 - AluSx SINE Alu -8 304 1 223 200 143 76 chr15 3084698 3084803 -82610951 + MER5B DNA MER1_type 5 116 -62 1641 79 0 10 chr15 3084976 3085178 -82610576 - AluSq SINE Alu -113 200 1 200 287 196 28 chr15 3085734 3085877 -82609877 - MIR3 SINE MIR -35 173 7 348 133 33 0 chr15 3086068 3086128 -82609626 + MLT1C LTR MaLR 1 62 -405 2290 163 59 2 chr15 3086555 3086960 -82608794 + MSTA LTR MaLR 1 428 0 433 248 32 6 chr15 3087079 3087236 -82608518 + L2 LINE L2 2429 2589 -725 2094 93 4 0 chr15 3087339 3087617 -82608137 - AluSx SINE Alu -33 279 1 1137 239 64 18 chr15 3088378 3088888 -82606866 + L1MC4 LINE L1 4915 5454 -720 2197 104 10 0 chr15 3088890 3089179 -82606575 - AluSp SINE Alu -21 292 1 442 173 0 39 chr15 3089183 3089287 -82606467 + L1MC4 LINE L1 5854 5953 -2089 1991 213 82 16 chr15 3089409 3089876 -82605878 - L1MC3 LINE L1 -74 7711 7199 2800 7 0 0 chr15 3089876 3090178 -82605576 + AluYa5 SINE Alu 1 302 -9 1991 213 82 16 chr15 3090178 3090273 -82605481 - L1MC3 LINE L1 -586 7199 7112 530 182 0 9 chr15 3090286 3090396 -82605358 - L1PB3 LINE L1 -14 6140 6032 1565 156 154 96 chr15 3090396 3090940 -82604814 + LTR12 LTR ERV1 1 576 -138 348 215 25 0 chr15 3090940 3091019 -82604735 - L1PB3 LINE L1 -114 6040 5960 754 127 32 0 chr15 3091171 3091297 -82604457 - L1PB3 LINE L1 -207 5947 5818 1272 300 24 20 chr15 3091530 3092277 -82603477 - L1M4 LINE L1 -3022 3124 2375 305 200 56 11 chr15 3092290 3092380 -82603374 + L1MCa LINE L1 2101 2194 -4232 26 82 0 0 chr15 3092380 3092441 -82603313 + AT_rich Low_complexity Low_complexity 1 61 0 4148 127 40 19 chr15 3092442 3092499 -82603255 - L1PA14 LINE L1 -24 6137 6083 2064 153 80 30 chr15 3092499 3092938 -82602816 - LOR1b LTR ERV1 0 461 1 4148 127 40 19 chr15 3092938 3093631 -82602123 - L1PA14 LINE L1 -78 6083 5371 664 71 36 0 chr15 3093622 3093734 -82602020 - L1P4 LINE L1 -672 5489 5374 * 3742 144 16 21 chr15 3093729 3094587 -82601167 - L1P4 LINE L1 -673 5488 4638 2191 92 7 10 chr15 3094587 3094880 -82600874 + AluY SINE Alu 1 292 -19 3742 144 16 21 chr15 3094880 3094962 -82600792 - L1P4 LINE L1 -1523 4638 4557 379 287 0 29 chr15 3095168 3095304 -82600450 - MLT1E LTR MaLR -461 132 1 398 193 35 35 chr15 3095311 3095425 -82600329 - L1MD3 LINE L1 -285 7710 7597 1864 89 8 4 chr15 3095693 3095974 -82599780 + AluY SINE Alu 35 316 0 2064 133 3 0 chr15 3096074 3096359 -82599395 + AluSx SINE Alu 5 290 -22 580 229 3 129 chr15 3096359 3096577 -82599177 - L1MCa LINE L1 -3390 3036 2867 2280 104 0 3 chr15 3096577 3096875 -82598879 - AluSg SINE Alu -13 297 1 580 229 3 129 chr15 3096875 3096966 -82598788 - L1MCa LINE L1 -3559 2867 2766 2365 95 0 0 chr15 3096977 3097273 -82598481 - AluSx SINE Alu -16 296 1 261 261 95 46 chr15 3097466 3097707 -82598047 - L1 LINE L1 -1127 5019 4767 218 281 0 0 chr15 3097722 3097779 -82597975 - MIR SINE MIR -205 57 1 1690 200 0 7 chr15 3097844 3098144 -82597610 - AluJb SINE Alu -14 298 1 2183 118 3 3 chr15 3098394 3098698 -82597056 + AluSc SINE Alu 1 304 -5 957 228 38 29 chr15 3098798 3098919 -82596835 - L1MCa LINE L1 -3907 2700 2582 531 140 75 9 chr15 3098919 3099026 -82596728 - L1MA3 LINE L1 0 6305 6192 957 228 38 29 chr15 3099026 3099344 -82596410 - L1MCa LINE L1 -4025 2582 2223 1181 183 3 45 chr15 3099350 3099661 -82596093 + L1MCa LINE L1 1921 2218 -4208 2415 86 0 0 chr15 3100022 3100325 -82595429 + AluY SINE Alu 1 303 -8 259 206 55 14 chr15 3100326 3100399 -82595355 - L1MD3 LINE L1 -355 7640 7565 3967 239 61 72 chr15 3100644 3102542 -82593212 - L1MC3 LINE L1 -14 8051 6173 2365 112 3 0 chr15 3102542 3102854 -82592900 - AluSp SINE Alu 0 313 1 3967 239 61 72 chr15 3102854 3102894 -82592860 - L1MC3 LINE L1 -1892 6173 6134 1527 194 3 48 chr15 3102904 3103218 -82592536 + AluJo SINE Alu 1 300 -12 1792 237 65 20 chr15 3103230 3103351 -82592403 - L1MC3 LINE L1 -732 5722 5608 2292 90 3 0 chr15 3103351 3103639 -82592115 - AluSg SINE Alu -17 293 5 1792 237 65 20 chr15 3103639 3104298 -82591456 - L1MC3 LINE L1 -846 5608 4896 1979 260 35 41 chr15 3104311 3105172 -82590582 - L1MC3 LINE L1 -1772 4654 3799 348 246 18 2 chr15 3105173 3105353 -82590401 + MLT1F1 LTR MaLR 349 567 0 838 213 31 39 chr15 3105361 3105568 -82590186 + L1MD3 LINE L1 7731 7937 -58 2140 127 0 25 chr15 3105568 3105884 -82589870 - AluSx SINE Alu -4 308 1 838 213 31 39 chr15 3105884 3105930 -82589824 + L1MD3 LINE L1 7937 7982 -13 230 21 62 21 chr15 3105959 3106007 -82589747 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2382 97 0 7 chr15 3106416 3106726 -82589028 - AluSq SINE Alu -5 308 1 1890 164 3 6 chr15 3107049 3107360 -82588394 + AluJo SINE Alu 1 310 -2 2269 154 28 42 chr15 3108634 3109015 -82586739 + MSTA LTR MaLR 1 377 -51 2376 86 7 0 chr15 3109015 3109317 -82586437 - AluSg SINE Alu -6 304 1 2269 154 28 42 chr15 3109317 3109369 -82586385 + MSTA LTR MaLR 377 428 0 2150 122 3 0 chr15 3109627 3109931 -82585823 - AluSx SINE Alu -7 305 1 3805 221 18 18 chr15 3109933 3110819 -82584935 + MER54A LTR ERVL 16 901 0 576 186 16 32 chr15 3113752 3113940 -82581814 - L1MA7 LINE L1 -6 6285 6101 1773 243 46 35 chr15 3114155 3115323 -82580431 - L1MC3 LINE L1 -2994 3432 2255 2135 166 32 12 chr15 3115363 3115774 -82579980 + MSTB1 LTR MaLR 1 419 -13 2459 76 0 0 chr15 3115823 3116126 -82579628 + AluY SINE Alu 1 303 -8 794 215 89 7 chr15 3116126 3116391 -82579363 + L1MCa LINE L1 1935 2221 -4205 433 323 165 25 chr15 3116408 3116693 -82579061 - MLT1E LTR MaLR -268 325 1 601 210 14 0 chr15 3116696 3116839 -82578915 - L1MD3 LINE L1 -281 7714 7570 964 196 11 6 chr15 3117119 3117298 -82578456 + AluJb SINE Alu 130 309 -3 4818 229 86 41 chr15 3117311 3118021 -82577733 - L1MC3 LINE L1 -25 8040 7364 1991 119 14 11 chr15 3118021 3118330 -82577424 - AluSc SINE Alu 0 312 3 4818 229 86 41 chr15 3118330 3119264 -82576490 - L1MC3 LINE L1 -701 7364 6301 2575 58 0 10 chr15 3119264 3119577 -82576177 + AluY SINE Alu 1 310 -1 4818 229 86 41 chr15 3119577 3119754 -82576000 - L1MC3 LINE L1 -1764 6301 6134 1835 254 59 33 chr15 3119755 3120425 -82575329 - L1MC3 LINE L1 -721 5733 5028 1558 194 3 40 chr15 3120425 3120618 -82575136 - AluJo SINE Alu 0 312 134 2219 113 3 0 chr15 3120618 3120918 -82574836 - AluSx SINE Alu -11 301 1 1558 194 3 40 chr15 3120918 3121048 -82574706 - AluJo SINE Alu -178 134 1 1835 254 59 33 chr15 3121048 3121363 -82574391 - L1MC3 LINE L1 -1426 5028 4723 852 299 131 18 chr15 3121367 3122033 -82573721 - L1MC3 LINE L1 -1799 4627 3887 443 187 47 19 chr15 3122117 3122305 -82573449 + MLT1E LTR MaLR 355 593 0 758 220 47 8 chr15 3122313 3122549 -82573205 + L1MD3 LINE L1 7731 7975 -20 2408 85 0 0 chr15 3122923 3123217 -82572537 + AluY SINE Alu 1 294 -17 941 163 69 82 chr15 3123590 3124053 -82571701 + THE1C LTR MaLR 1 375 0 1788 131 64 0 chr15 3124736 3125003 -82570751 + AluSx SINE Alu 1 307 0 208 0 0 0 chr15 3125003 3125026 -82570728 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 1194 175 9 22 chr15 3125919 3126148 -82569606 - L1PA15 LINE L1 0 6165 5940 2429 62 10 10 chr15 3126237 3126545 -82569209 - AluY SINE Alu -3 308 1 505 236 124 42 chr15 3126779 3127038 -82568716 + HsTC2 DNA Tc2 1233 1688 -210 1379 214 45 3 chr15 3127604 3127894 -82567860 - AluJb SINE Alu -10 302 1 2261 78 23 13 chr15 3127971 3128279 -82567475 + AluY SINE Alu 1 311 0 403 329 92 12 chr15 3128605 3128845 -82566909 - L1MEc LINE L1 -6046 350 92 2354 90 10 0 chr15 3129063 3129364 -82566390 + AluSp SINE Alu 1 304 -9 656 217 73 62 chr15 3130412 3130719 -82565035 - L1MC3 LINE L1 -3942 2665 2294 2256 88 0 3 chr15 3130719 3131038 -82564716 - AluSg SINE Alu 0 318 1 656 217 73 62 chr15 3131038 3131133 -82564621 - L1MC3 LINE L1 -4313 2294 2201 * 1418 162 0 29 chr15 3131129 3131437 -82564317 + L1MCa LINE L1 1921 2219 -4207 677 253 115 48 chr15 3131437 3131749 -82564005 - MLT1E LTR MaLR -248 345 13 325 311 121 0 chr15 3131763 3131895 -82563859 - L1MD3 LINE L1 -282 7713 7566 3895 294 106 38 chr15 3132149 3133886 -82561868 - L1MC3 LINE L1 -11 7774 5837 2273 84 3 53 chr15 3133886 3134209 -82561545 - AluSq SINE Alu -6 307 1 3895 294 106 38 chr15 3134209 3134805 -82560949 - L1MC3 LINE L1 -1948 5837 5283 198 0 0 0 chr15 3135091 3135113 -82560641 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 555 157 0 0 chr15 3135118 3135201 -82560553 - AluSc SINE Alu -21 288 206 303 75 0 0 chr15 3135201 3135241 -82560513 - Alu SINE Alu -268 40 1 411 113 0 0 chr15 3135250 3135312 -82560442 + (TG)n Simple_repeat Simple_repeat 1 62 0 2136 75 0 4 chr15 3135312 3135593 -82560161 - AluY SINE Alu -31 280 1 2363 74 0 0 chr15 3135863 3136161 -82559593 - AluY SINE Alu -13 298 1 390 234 73 92 chr15 3136348 3136566 -82559188 - L1MCa LINE L1 -3759 2667 2454 302 78 0 59 chr15 3136570 3136621 -82559133 - MER75 DNA T2_type -4 500 453 651 202 52 19 chr15 3136643 3136856 -82558898 - L1MCa LINE L1 -3969 2457 2238 781 211 40 46 chr15 3136862 3137166 -82558588 + L1MCa LINE L1 1918 2219 -4207 337 136 11 80 chr15 3137166 3137254 -82558500 - MLT1F1 LTR MaLR -233 334 253 309 284 55 37 chr15 3137342 3137451 -82558303 - MLT1F1 LTR MaLR -482 111 1 497 230 6 67 chr15 3137455 3137620 -82558134 - L1MD3 LINE L1 -282 7713 7559 3094 260 96 47 chr15 3137832 3139477 -82556277 - L1MC3 LINE L1 -6 7779 6033 1600 209 3 0 chr15 3139477 3139773 -82555981 - AluSx SINE Alu -15 297 1 3094 260 96 47 chr15 3139773 3139963 -82555791 - L1MC3 LINE L1 -1752 6033 5854 994 257 62 30 chr15 3139963 3140153 -82555601 - L1MC3 LINE L1 -720 5454 5272 2208 110 0 10 chr15 3140153 3140461 -82555293 + AluSc SINE Alu 4 308 -1 994 257 62 30 chr15 3140461 3140916 -82554838 - L1MC3 LINE L1 -902 5272 4781 * 1379 237 36 14 chr15 3140913 3141419 -82554335 - L1MC3 LINE L1 -2111 4035 3519 260 281 24 0 chr15 3141421 3141503 -82554251 + MLT1E LTR MaLR 350 433 -160 900 190 79 8 chr15 3141607 3141860 -82553894 + L1MD3 LINE L1 7724 7994 -1 2318 81 3 10 chr15 3142199 3142497 -82553257 + AluSc SINE Alu 1 296 -13 1013 270 61 10 chr15 3142711 3143107 -82552647 - L1MC3 LINE L1 -1504 6281 5866 808 228 58 83 chr15 3143177 3143616 -82552138 - MER66A LTR ERV1 -3 475 97 2008 262 66 32 chr15 3143716 3144347 -82551407 - L1MC3 LINE L1 -748 5398 4707 2004 119 13 50 chr15 3144347 3144665 -82551089 - AluSx SINE Alu -6 306 1 2008 262 66 32 chr15 3144665 3145209 -82550545 - L1MC3 LINE L1 -1439 4707 4183 2439 79 0 13 chr15 3145234 3145549 -82550205 - AluY SINE Alu 0 311 1 656 251 55 34 chr15 3145557 3145940 -82549814 - L1MC3 LINE L1 -2190 3956 3566 371 241 131 8 chr15 3145982 3146168 -82549586 + MLT1E LTR MaLR 418 593 0 467 258 38 22 chr15 3146170 3146437 -82549317 + L1MD3 LINE L1 7724 7994 -1 2196 108 0 10 chr15 3147344 3147639 -82548115 - AluY SINE Alu -15 296 5 1398 207 0 39 chr15 3147655 3147960 -82547794 - AluJo SINE Alu -19 293 1 606 265 35 5 chr15 3147962 3148162 -82547592 - L1MC3 LINE L1 -506 7279 7074 1449 291 39 39 chr15 3148176 3148449 -82547305 - L1M4 LINE L1 -1458 4688 4416 1750 118 0 8 chr15 3148449 3148694 -82547060 - AluSg SINE Alu -19 291 49 1449 291 39 39 chr15 3148694 3148789 -82546965 - L1M4 LINE L1 -1730 4416 4322 1684 157 78 28 chr15 3148789 3149146 -82546608 - THE1C LTR MaLR 0 375 1 1449 291 39 39 chr15 3149146 3149945 -82545809 - L1M4 LINE L1 -1823 4323 3520 373 249 296 6 chr15 3149953 3150122 -82545632 + MLT1E LTR MaLR 376 593 0 755 212 45 12 chr15 3150130 3150375 -82545379 + L1MD3 LINE L1 7731 7983 -12 1779 84 88 29 chr15 3150516 3150789 -82544965 - AluSg SINE Alu -21 289 1 687 239 7 0 chr15 3151022 3151211 -82544543 + FAM SINE Alu 1 56 0 1503 255 39 37 chr15 3151418 3151928 -82543826 + MER54A LTR ERVL 19 529 -372 185 160 0 20 chr15 3151974 3152024 -82543730 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1100 266 34 87 chr15 3152054 3152122 -82543632 - MLT2B3 LTR ERVL -54 500 430 2206 92 4 0 chr15 3152122 3152425 -82543329 - AluY SINE Alu 0 304 1 1100 266 34 87 chr15 3152425 3152882 -82542872 - MLT2B3 LTR ERVL -124 430 2 2475 201 54 2 chr15 3152885 3153463 -82542291 - ERVL-B3 LTR ERVL -20 5744 5137 1508 230 34 37 chr15 3153465 3153874 -82541880 - MSTC LTR MaLR 0 428 21 403 231 66 8 chr15 3153878 3153999 -82541755 - MSTC-int LTR MaLR -1 1734 1607 2419 230 8 69 chr15 3154061 3154788 -82540966 - LTR8 LTR ERV1 -8 683 1 962 258 39 13 chr15 3154791 3155097 -82540657 - HUERS-P1 LTR ERV1 -4 6259 5946 861 252 71 17 chr15 3155202 3155496 -82540258 - PRIMA41-int LTR ERV1 -105 6226 5917 5642 159 51 117 chr15 3155533 3156541 -82539213 - PRIMA41-int LTR ERV1 -299 5422 4350 1950 115 7 17 chr15 3156541 3156828 -82538926 - AluSc SINE Alu -25 284 1 5642 159 51 117 chr15 3156828 3157107 -82538647 - PRIMA41-int LTR ERV1 -1371 4350 4054 1488 180 29 67 chr15 3157107 3157282 -82538472 - AluJb SINE Alu -5 307 148 2213 112 0 3 chr15 3157282 3157576 -82538178 - AluSp SINE Alu -14 299 7 1488 180 29 67 chr15 3157576 3157716 -82538038 - AluJb SINE Alu -164 148 4 5642 159 51 117 chr15 3157716 3158351 -82537403 - PRIMA41-int LTR ERV1 -1667 4054 3729 765 195 124 28 chr15 3158365 3158647 -82537107 - LTR15 LTR ERV1 -18 475 167 3289 197 64 33 chr15 3158835 3159086 -82536668 - PRIMA41-int LTR ERV1 -1588 3292 3050 2389 86 23 0 chr15 3159086 3159388 -82536366 + AluY SINE Alu 1 309 -2 3289 197 64 33 chr15 3159388 3160148 -82535606 - PRIMA41-int LTR ERV1 -1830 3050 1210 1499 237 91 45 chr15 3160173 3160691 -82535063 - PRIMA41-int LTR ERV1 -5442 2095 366 1434 215 75 70 chr15 3160692 3161249 -82534505 - PRIMA41-int LTR ERV1 -5242 1021 462 575 288 0 12 chr15 3161403 3161566 -82534188 - PRIMA41-int LTR ERV1 -6062 201 41 1892 234 11 104 chr15 3161591 3162353 -82533401 - LTR8 LTR ERV1 0 691 1 2102 275 78 64 chr15 3162355 3163327 -82532427 - MSTC-int LTR MaLR -210 1441 449 372 22 0 0 chr15 3163327 3163372 -82532382 + (TG)n Simple_repeat Simple_repeat 2 46 0 2102 275 78 64 chr15 3163372 3163549 -82532205 - MSTC-int LTR MaLR -1202 449 276 7567 21 15 0 chr15 3163553 3164565 -82531189 - L1PA3 LINE L1 0 6155 5136 2620 19 0 0 chr15 3164565 3164887 -82530867 + L1PA3 LINE L1 4817 5138 -1008 709 250 123 35 chr15 3164880 3164936 -82530818 - MSTC-int LTR MaLR -1390 345 295 * 3748 122 80 5 chr15 3164936 3165535 -82530219 - LTR9B LTR ERV1 0 644 1 709 250 123 35 chr15 3165535 3165794 -82529960 - MSTC-int LTR MaLR -1440 295 2 763 193 9 71 chr15 3165796 3166006 -82529748 - MSTC LTR MaLR 0 428 232 1457 182 60 54 chr15 3166006 3166357 -82529397 - LTR10B LTR ERV1 0 547 195 892 179 49 27 chr15 3166481 3166704 -82529050 - MSTC LTR MaLR -193 235 8 775 164 42 12 chr15 3166709 3166874 -82528880 - ERVL-B3 LTR ERVL -624 5140 4971 * 6373 231 22 20 chr15 3166870 3168434 -82527320 - ERVL-B3 LTR ERVL -946 4818 3252 275 353 0 0 chr15 3169330 3169466 -82526288 - PRIMA41-int LTR ERV1 -499 4455 4320 467 339 14 42 chr15 3171228 3171450 -82524304 - PRIMA41-int LTR ERV1 -1990 5766 5539 1963 131 14 0 chr15 3171450 3171740 -82524014 - AluSg SINE Alu -16 294 1 2356 98 0 19 chr15 3171745 3172052 -82523702 - AluSg SINE Alu -9 301 1 467 339 14 42 chr15 3172052 3172254 -82523500 - PRIMA41-int LTR ERV1 -2221 5535 5348 9039 228 49 6 chr15 3172790 3175502 -82520252 - ERVL-B3 LTR ERVL -2905 2859 20 1924 239 35 44 chr15 3175534 3175943 -82519811 - MLT2B3 LTR ERVL -12 542 138 4086 163 23 40 chr15 3175943 3176213 -82519541 - LTR39 LTR ERV1 0 783 510 2233 121 0 0 chr15 3176213 3176519 -82519235 - AluSg SINE Alu -4 306 1 4086 163 23 40 chr15 3176519 3177045 -82518709 - LTR39 LTR ERV1 -273 510 1 1924 239 35 44 chr15 3177045 3177182 -82518572 - MLT2B3 LTR ERVL -416 138 1 1256 264 39 6 chr15 3177182 3177546 -82518208 + MER54A LTR ERVL 522 897 -4 278 343 86 0 chr15 3177736 3177876 -82517878 + HsTC2 DNA Tc2 2 153 -1745 296 264 187 25 chr15 3177965 3178094 -82517660 + HsTC2 DNA Tc2 1508 1615 -283 2051 123 33 41 chr15 3178094 3178459 -82517295 - THE1B LTR MaLR -2 362 1 296 264 187 25 chr15 3178459 3178644 -82517110 + HsTC2 DNA Tc2 1615 1873 -25 801 204 96 119 chr15 3178715 3179186 -82516568 - MER4C LTR ERV1 0 465 6 6241 169 50 43 chr15 3179187 3181028 -82514726 - MER4C-int LTR ERV1 -8 6590 4290 6999 30 1 1 chr15 3181032 3181905 -82513849 - L1PA4 LINE L1 -5 6150 5278 5660 40 0 0 chr15 3181905 3182625 -82513129 + L1P LINE L1 4309 5028 -1118 1091 145 52 76 chr15 3182625 3182914 -82512840 - MER83A-int LTR ERV1 -3404 4716 4435 647 168 0 0 chr15 3182917 3183018 -82512736 + AluJ/FLAM SINE Alu 1 101 -211 2273 141 71 2 chr15 3183019 3183415 -82512339 - MER83A-int LTR ERV1 -1415 5676 5254 2192 59 33 52 chr15 3184922 3185229 -82510525 - AluY SINE Alu -10 301 1 186 226 81 16 chr15 3185970 3186032 -82509722 + MER5B DNA MER1_type 113 178 0 2089 138 6 13 chr15 3187430 3187742 -82508012 + AluSx SINE Alu 1 310 -2 2361 28 0 0 chr15 3189146 3189430 -82506324 - L1PA3 LINE L1 -413 5742 5459 3472 31 12 0 chr15 3189430 3189842 -82505912 + L1PA3 LINE L1 5738 6155 0 1216 234 12 8 chr15 3189850 3190098 -82505656 - AluJo SINE Alu -30 282 34 546 206 5 98 chr15 3190390 3190574 -82505180 - MER83A-int LTR ERV1 -4168 3952 3786 271 269 46 46 chr15 3190708 3190838 -82504916 - MER83A-int LTR ERV1 -3494 4626 4497 434 195 131 56 chr15 3190845 3191112 -82504642 - MER83A-int LTR ERV1 -2581 4017 3731 1433 154 24 14 chr15 3191201 3192361 -82503393 + L1P LINE L1 2843 4164 -1982 671 244 22 39 chr15 3192434 3192479 -82503275 - MLT2B3 LTR ERVL 0 554 510 258 116 0 0 chr15 3192479 3192522 -82503232 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 671 244 22 39 chr15 3192522 3192706 -82503048 - MLT2B3 LTR ERVL -44 510 329 436 326 51 37 chr15 3192795 3193169 -82502585 - L1MC3 LINE L1 -945 6840 6462 555 173 9 0 chr15 3193207 3193317 -82502437 - Tigger4(Zombi) DNA MER2_type 0 2731 2621 1078 192 78 117 chr15 3193318 3193730 -82502024 - MER83 LTR ERV1 -7 441 46 354 90 45 30 chr15 3193727 3193794 -82501960 - MER83 LTR ERV1 -344 104 37 * 2047 162 17 0 chr15 3193799 3194144 -82501610 - MER83-int LTR ERV1 -44 4241 3891 1951 133 57 17 chr15 3194135 3194489 -82501265 - MER83-int LTR ERV1 -1244 3041 2674 * 399 167 0 13 chr15 3194501 3194579 -82501175 - MER83-int LTR ERV1 -258 6073 5997 5000 187 72 37 chr15 3194749 3196073 -82499681 - MER83A-int LTR ERV1 -547 5399 4059 3134 155 97 6 chr15 3196064 3196703 -82499051 - MER83A-int LTR ERV1 -1818 3062 2366 * 589 136 17 102 chr15 3196805 3196850 -82498904 - MER83A-int LTR ERV1 -2492 2388 2341 2174 107 0 7 chr15 3196850 3197149 -82498605 - AluY SINE Alu -14 297 1 589 136 17 102 chr15 3197149 3197280 -82498474 - MER83A-int LTR ERV1 -2539 2341 2227 * 2399 168 58 32 chr15 3197278 3198184 -82497570 - MER83A-int LTR ERV1 -193 1932 1075 3418 181 63 35 chr15 3198202 3199246 -82496508 - MER83A-int LTR ERV1 -3725 1155 9 1143 164 82 108 chr15 3199257 3199635 -82496119 - MER83 LTR ERV1 -27 421 54 451 163 10 10 chr15 3199641 3199739 -82496015 - MER83 LTR ERV1 -344 104 7 34 0 0 0 chr15 3199769 3199803 -82495951 + AT_rich Low_complexity Low_complexity 1 34 0 707 153 44 0 chr15 3199841 3199978 -82495776 - Tigger4(Zombi) DNA MER2_type -134 2597 2455 2203 102 7 0 chr15 3199993 3200297 -82495457 - AluSq SINE Alu -7 306 1 2821 190 134 8 chr15 3200297 3201050 -82494704 + Tigger3(Golem) DNA MER2_type 2181 3028 -1 1753 131 67 25 chr15 3201060 3201420 -82494334 - MER51B LTR ERV1 -2 375 1 606 207 25 0 chr15 3201421 3201542 -82494212 - MER51B-int LTR ERV1 0 7816 7693 363 229 11 78 chr15 3201765 3201944 -82493810 - MER51A-int LTR ERV1 -6987 829 663 281 208 0 13 chr15 3202029 3202106 -82493648 - MER51A-int LTR ERV1 -3067 2519 2444 * 1499 194 50 124 chr15 3202105 3202702 -82493052 - MER51A-int LTR ERV1 -7263 553 1 1437 143 56 44 chr15 3202702 3203023 -82492731 - MER51A LTR ERV1 0 634 310 231 185 231 0 chr15 3203038 3203103 -82492651 - MER51A LTR ERV1 -554 80 1 796 174 64 0 chr15 3203108 3203280 -82492474 - Tigger4(Zombi) DNA MER2_type -485 2246 2064 1016 273 55 42 chr15 3203315 3203562 -82492192 - L1MC3 LINE L1 -1377 6408 6166 2290 85 0 0 chr15 3203562 3203890 -82491864 - AluY SINE Alu 0 328 1 1016 273 55 42 chr15 3203890 3204183 -82491571 - L1MC3 LINE L1 -1619 6166 5860 543 214 51 56 chr15 3204197 3204634 -82491120 - L1M4 LINE L1 -734 5444 5003 3945 137 56 19 chr15 3204669 3205841 -82489913 + L1PA11 LINE L1 4824 6045 -129 5721 183 20 4 chr15 3205843 3206979 -82488775 + PRIMA41-int LTR ERV1 2740 3893 -3863 2150 112 7 3 chr15 3207070 3207365 -82488389 + AluY SINE Alu 1 296 -15 278 313 98 0 chr15 3208254 3208366 -82487388 - MER83A-int LTR ERV1 -971 815 693 1114 296 35 23 chr15 3208662 3209057 -82486697 - MER83A-int LTR ERV1 -1343 443 44 773 259 58 88 chr15 3209063 3209515 -82486239 - LTR38B LTR ERV1 -55 555 118 677 110 0 0 chr15 3209568 3209668 -82486086 + L1PA11 LINE L1 6008 6107 -67 312 213 33 17 chr15 3209755 3209926 -82485828 - MLT1E LTR MaLR -15 578 346 349 296 43 0 chr15 3261733 3261848 -82433906 + HsTC2 DNA Tc2 35 154 -1744 * 689 274 31 57 chr15 3261845 3262326 -82433428 + HsTC2 DNA Tc2 1233 1873 -25 355 333 49 27 chr15 3262596 3262821 -82432933 - L1M4 LINE L1 -1034 5112 4883 1283 241 0 10 chr15 3262954 3263257 -82432497 - AluJo SINE Alu -12 300 1 564 222 11 103 chr15 3264333 3264518 -82431236 - MER83A-int LTR ERV1 -4167 3953 3786 1037 220 20 27 chr15 3264606 3265040 -82430714 - MER83A-int LTR ERV1 -2148 4183 3731 5084 179 76 78 chr15 3265078 3266972 -82428782 - MER83A-int LTR ERV1 -2869 3729 682 1496 204 28 29 chr15 3266961 3267524 -82428230 - MER83A-int LTR ERV1 -2351 1934 1317 * 2427 177 60 11 chr15 3268594 3269452 -82426302 - L1P5 LINE L1 -479 5675 4767 903 302 73 72 chr15 3269463 3270650 -82425104 - L1PA15-16 LINE L1 -5685 1165 1 2459 248 98 55 chr15 3270668 3271179 -82424575 - L1MC3 LINE L1 -659 7195 6708 240 59 0 0 chr15 3271179 3271213 -82424541 + (CA)n Simple_repeat Simple_repeat 1 34 0 2459 248 98 55 chr15 3271213 3271921 -82423833 - L1MC3 LINE L1 -1146 6708 5923 1331 253 40 22 chr15 3271921 3272591 -82423163 - L1MC3 LINE L1 -720 5523 4846 1225 264 35 31 chr15 3272606 3273118 -82422636 - L1MC3 LINE L1 -2105 4110 3597 281 288 18 54 chr15 3273122 3273233 -82422521 + MLT1E LTR MaLR 341 447 -146 415 259 164 9 chr15 3273315 3273535 -82422219 + L1MD3 LINE L1 7733 7986 -9 400 277 130 30 chr15 3274856 3275087 -82420667 - L1MC3 LINE L1 -6051 345 92 386 284 22 0 chr15 3275206 3275340 -82420414 - L1MD3 LINE L1 -288 7707 7571 1079 163 0 0 chr15 3275442 3275602 -82420152 + AluSx SINE Alu 1 160 -152 1080 275 65 2 chr15 3275607 3276072 -82419682 - L1M4 LINE L1 -872 5274 4781 * 1093 254 86 11 chr15 3276070 3276547 -82419207 - L1M4 LINE L1 -2115 4031 3519 343 238 12 0 chr15 3276548 3276628 -82419126 + MLT1E LTR MaLR 349 429 -164 1051 183 53 0 chr15 3276729 3276975 -82418779 + L1MD3 LINE L1 7724 7982 -13 2206 146 25 3 chr15 3277592 3277948 -82417806 - THE1B LTR MaLR 0 364 1 1646 209 6 3 chr15 3279781 3280116 -82415638 + MER54A LTR ERVL 24 359 -542 674 203 14 0 chr15 3280175 3280318 -82415436 - L1MD3 LINE L1 -282 7713 7569 813 221 42 8 chr15 3280548 3280810 -82414944 - L1MC3 LINE L1 -4 7781 7511 411 319 59 28 chr15 3281168 3281422 -82414332 - LTR38B-int LTR ERV1 -1412 374 113 479 262 87 42 chr15 3281486 3282004 -82413750 - LTR38B LTR ERV1 0 611 64 394 299 109 0 chr15 3282689 3282873 -82412881 - L1MEc LINE L1 -6078 318 115 601 180 44 16 chr15 3283366 3283549 -82412205 - L1MCa LINE L1 -3996 2430 2243 295 132 0 0 chr15 3283565 3283633 -82412121 + L1MCa LINE L1 1921 1988 -4438 447 224 39 75 chr15 3283654 3283674 -82412080 + L1MCa LINE L1 1974 1993 -4433 1975 130 3 23 chr15 3283674 3283974 -82411780 + AluSx SINE Alu 2 295 -17 447 224 39 75 chr15 3283974 3284208 -82411546 + L1MCa LINE L1 1993 2219 -4207 282 291 97 24 chr15 3284270 3284435 -82411319 - MLT1E LTR MaLR -333 260 84 239 229 220 18 chr15 3284519 3284628 -82411126 - L1MC4 LINE L1 -421 7621 7491 21 0 0 0 chr15 3284759 3284780 -82410974 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr15 3284873 3284912 -82410842 + AT_rich Low_complexity Low_complexity 1 39 0 968 205 111 3 chr15 3284913 3285201 -82410553 - L1MC3 LINE L1 -19 7766 7448 962 258 18 40 chr15 3285207 3285337 -82410417 - L1MC3 LINE L1 -384 7401 7270 1885 151 6 26 chr15 3285337 3285649 -82410105 - AluJo SINE Alu -6 306 1 962 258 18 40 chr15 3285649 3285844 -82409910 - L1MC3 LINE L1 -515 7270 7083 1285 285 66 46 chr15 3285862 3286738 -82409016 - L1M4 LINE L1 -1453 4693 3787 180 0 0 0 chr15 3286738 3286758 -82408996 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1285 285 66 46 chr15 3286758 3287032 -82408722 - L1M4 LINE L1 -2359 3787 3520 395 208 52 7 chr15 3287073 3287208 -82408546 + MLT1E LTR MaLR 422 593 0 667 256 24 12 chr15 3287215 3287465 -82408289 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 3287555 3287577 -82408177 + AT_rich Low_complexity Low_complexity 1 22 0 349 269 15 15 chr15 3287825 3287955 -82407799 + L1ME1 LINE L1 6011 6140 -26 610 242 6 38 chr15 3288022 3288179 -82407575 + FAM SINE Alu 3 154 -31 471 35 0 0 chr15 3288181 3288238 -82407516 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2356 77 0 3 chr15 3288295 3288593 -82407161 - AluY SINE Alu -14 297 1 1840 244 32 25 chr15 3288719 3289244 -82406510 + MER54A LTR ERVL 1 529 -372 249 139 0 0 chr15 3289282 3289325 -82406429 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1626 230 28 83 chr15 3289333 3289898 -82405856 - MLT2B3 LTR ERVL -20 534 1 2603 209 16 5 chr15 3289898 3290509 -82405245 - ERVL-B3 LTR ERVL -7 5757 5140 1770 214 33 33 chr15 3290512 3290938 -82404816 - MSTC LTR MaLR 0 428 3 2343 231 20 52 chr15 3291125 3291814 -82403940 - LTR8 LTR ERV1 -9 682 16 1148 261 19 13 chr15 3291850 3292161 -82403593 - HUERS-P1 LTR ERV1 -5 6258 5946 6845 189 65 74 chr15 3292266 3293517 -82402237 - MER41-int LTR ERV1 -105 6226 4965 2361 77 7 3 chr15 3293517 3293827 -82401927 + AluY SINE Alu 1 311 0 6845 189 65 74 chr15 3293827 3294180 -82401574 - MER41-int LTR ERV1 -1366 4965 4610 1548 193 18 11 chr15 3294180 3294465 -82401289 - AluJo SINE Alu -23 289 3 6845 189 65 74 chr15 3294465 3296371 -82399383 - MER41-int LTR ERV1 -1721 4610 1816 1064 235 89 89 chr15 3296431 3296924 -82398830 - MER41-int LTR ERV1 -4114 3423 2931 2554 223 33 27 chr15 3296939 3297793 -82397961 - MER41-int LTR ERV1 -2594 2286 1280 894 218 66 9 chr15 3297793 3298134 -82397620 - LTR8 LTR ERV1 -364 363 1 899 284 61 78 chr15 3298134 3298665 -82397089 - MSTC-int LTR MaLR -221 1430 923 413 155 0 0 chr15 3298679 3298763 -82396991 + MSTC LTR MaLR 345 428 0 460 222 5 123 chr15 3298763 3298966 -82396788 + MSTC-int LTR MaLR 1 179 -1472 3012 217 11 10 chr15 3298968 3299669 -82396085 - ERVL-B3 LTR ERVL -1001 4763 4062 3216 265 82 12 chr15 3299875 3301094 -82394660 - ERVL-B3 LTR ERVL -4369 1285 10 1738 226 49 55 chr15 3301113 3301525 -82394229 - MLT2B3 LTR ERVL -8 546 136 4177 179 21 8 chr15 3301525 3302298 -82393456 - LTR39 LTR ERV1 0 783 1 1738 226 49 55 chr15 3302298 3302434 -82393320 - MLT2B3 LTR ERVL -418 136 1 1159 249 49 12 chr15 3302449 3302795 -82392959 + MER54A LTR ERVL 538 896 -5 395 273 106 48 chr15 3303123 3303450 -82392304 + HsTC2 DNA Tc2 1236 1543 -355 4766 51 10 0 chr15 3303450 3304035 -82391719 + LTR10C LTR ERV1 1 591 0 395 273 106 48 chr15 3304035 3304145 -82391609 + HsTC2 DNA Tc2 1543 1874 -24 545 215 81 6 chr15 3304225 3304397 -82391357 - MER4C LTR ERV1 -1 464 280 388 223 58 6 chr15 3304456 3304679 -82391075 - MER4C LTR ERV1 -196 269 6 7667 182 46 60 chr15 3304680 3306832 -82388922 - MER4C-int LTR ERV1 -8 6590 4091 1630 196 7 17 chr15 3306832 3307133 -82388621 + AluJb SINE Alu 1 298 -14 7667 182 46 60 chr15 3307133 3307639 -82388115 - MER4C-int LTR ERV1 -2507 4091 3579 1430 206 61 80 chr15 3307644 3307675 -82388079 - MER4C-int LTR ERV1 -1863 3017 2987 1581 211 0 20 chr15 3307675 3307969 -82387785 - AluJo SINE Alu -18 294 7 1430 206 61 80 chr15 3307969 3308525 -82387229 - MER4C-int LTR ERV1 -1893 2987 2441 398 122 27 0 chr15 3308527 3308601 -82387153 - L1PA15 LINE L1 -16 6149 6074 314 204 122 10 chr15 3308732 3308830 -82386924 - MER4C-int LTR ERV1 -5232 1099 991 316 49 0 0 chr15 3308840 3308881 -82386873 - MER4C-int LTR ERV1 -4793 1153 1113 457 209 23 16 chr15 3309067 3309196 -82386558 - MER4C-int LTR ERV1 -6356 242 113 1026 202 72 118 chr15 3309291 3309776 -82385978 - MER4C LTR ERV1 0 465 3 461 324 89 22 chr15 3310001 3310273 -82385481 - L1M4 LINE L1 -1050 5376 5077 2056 135 10 19 chr15 3310273 3310459 -82385295 - AluSg SINE Alu -2 308 125 207 0 0 0 chr15 3310459 3310482 -82385272 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2056 135 10 19 chr15 3310482 3310606 -82385148 - AluSg SINE Alu -185 125 1 461 324 89 22 chr15 3310606 3310657 -82385097 - L1M4 LINE L1 -1349 5077 5031 1114 235 78 35 chr15 3310804 3311229 -82384525 + LTR47B LTR ERVL 1 443 0 292 260 20 20 chr15 3312301 3312401 -82383353 + HERVL18 LTR ERVL 1225 1324 -4723 357 356 24 0 chr15 3313061 3313269 -82382485 + HERVL18 LTR ERVL 1852 2064 -3279 620 360 29 23 chr15 3313364 3313613 -82382141 + HERVL18 LTR ERVL 2312 2558 -2785 1952 169 0 13 chr15 3313613 3313927 -82381827 + AluSx SINE Alu 1 310 -2 620 360 29 23 chr15 3313927 3314366 -82381388 + HERVL18 LTR ERVL 2558 3004 -2339 999 251 34 17 chr15 3314560 3315179 -82380575 - L1MCa LINE L1 -3584 2842 2213 962 207 20 47 chr15 3315185 3315485 -82380269 + L1MCa LINE L1 1925 2216 -4210 386 297 157 13 chr15 3315493 3315722 -82380032 - MLT1E LTR MaLR -253 340 79 639 212 0 20 chr15 3315821 3315972 -82379782 - L1MD3 LINE L1 -283 7712 7565 1522 218 105 4 chr15 3316221 3316680 -82379074 - L1MC3 LINE L1 -6 7779 7275 5936 72 12 1 chr15 3316680 3317494 -82378260 - MER11B LTR ERVK -413 823 1 5978 199 32 56 chr15 3317506 3320213 -82375541 - L1MA1 LINE L1 -17 6285 3654 1403 205 6 75 chr15 3321175 3321497 -82374257 - AluJo SINE Alu -2 300 1 476 253 258 5 chr15 3321501 3321699 -82374055 + MLT1E LTR MaLR 346 593 0 793 225 29 16 chr15 3321726 3321970 -82373784 + L1MD3 LINE L1 7745 7991 -4 794 207 0 0 chr15 3321993 3322138 -82373616 + FRAM SINE Alu 13 157 -19 31 26 0 0 chr15 3322491 3322529 -82373225 + AT_rich Low_complexity Low_complexity 1 38 0 327 283 0 22 chr15 3322728 3322820 -82372934 + L1MC4 LINE L1 6614 6703 -1339 266 185 31 0 chr15 3322757 3322822 -82372932 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 * 339 300 0 0 chr15 3322822 3322912 -82372842 + L1MC4 LINE L1 6614 6703 -1339 1566 204 19 16 chr15 3323052 3323361 -82372393 + AluJb SINE Alu 3 312 0 254 140 0 20 chr15 3323380 3323430 -82372324 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 966 138 170 167 chr15 3324703 3325151 -82370603 - LTR47A LTR ERVL -2 450 2 895 253 38 112 chr15 3325312 3325971 -82369783 - LTR38B LTR ERV1 0 610 1 1525 306 53 38 chr15 3326168 3327320 -82368434 - LTR38B-int LTR ERV1 -251 7505 6337 1517 328 54 39 chr15 3327981 3329655 -82366099 - LTR38B-int LTR ERV1 -2913 4209 2511 277 273 45 0 chr15 3329870 3329958 -82365796 - LTR38B-int LTR ERV1 -4824 2298 2207 365 209 33 22 chr15 3330088 3330179 -82365575 - LTR38B-int LTR ERV1 -5045 2077 1986 627 325 18 24 chr15 3330672 3331004 -82364750 - LTR38B-int LTR ERV1 -5861 1261 932 287 339 58 0 chr15 3332191 3332312 -82363442 - LTR38B-int LTR ERV1 -971 815 688 782 304 38 46 chr15 3332563 3332958 -82362796 - LTR38B-int LTR ERV1 -1342 444 53 3516 104 10 45 chr15 3332979 3333584 -82362170 - L1PA13 LINE L1 -186 5977 5394 1105 188 8 0 chr15 3333581 3333815 -82361939 + L1P LINE L1 3265 3500 -2646 * 22 80 0 0 chr15 3333913 3333963 -82361791 + AT_rich Low_complexity Low_complexity 1 50 0 2753 182 66 5 chr15 3334257 3334860 -82360894 + LTR39 LTR ERV1 1 640 -143 1881 148 0 0 chr15 3334868 3335183 -82360571 - AluSq SINE Alu 0 315 1 618 212 7 22 chr15 3335183 3335320 -82360434 - AluJo SINE Alu -177 135 1 1374 90 0 0 chr15 3337042 3337220 -82358534 + AluSx SINE Alu 1 178 -134 299 271 69 62 chr15 3337250 3337738 -82358016 - LTR38B LTR ERV1 -65 545 1 243 88 0 0 chr15 3338148 3338182 -82357572 + (TG)n Simple_repeat Simple_repeat 2 35 0 1353 261 127 44 chr15 3338429 3339361 -82356393 - L1MC3 LINE L1 -913 6872 5864 583 261 51 5 chr15 3339372 3339734 -82356020 - L1MC3 LINE L1 -725 5453 5075 1669 176 168 8 chr15 3339786 3340155 -82355599 - MSTA LTR MaLR 0 428 1 5480 180 10 14 chr15 3340157 3341187 -82354567 - MSTA-int LTR MaLR -2 1578 553 1068 233 51 86 chr15 3341287 3341473 -82354281 - L1MC3 LINE L1 -472 7313 7122 2053 125 3 23 chr15 3341473 3341776 -82353978 + AluSx SINE Alu 1 297 -15 1068 233 51 86 chr15 3341776 3342122 -82353632 - L1MC3 LINE L1 -663 7122 6800 1754 258 32 5 chr15 3342251 3342816 -82352938 - L1MC3 LINE L1 -1352 6433 5854 1098 214 64 94 chr15 3342859 3343386 -82352368 - MER66A LTR ERV1 0 478 97 308 291 29 0 chr15 3343400 3343572 -82352182 - L1MC3 LINE L1 -748 5398 5222 3830 121 11 10 chr15 3343574 3344193 -82351561 - L1PA13 LINE L1 -6 6157 5538 2008 279 92 70 chr15 3344202 3346091 -82349663 - L1PA13 LINE L1 -707 5461 3528 320 191 36 12 chr15 3346186 3346270 -82349484 + MLT1E LTR MaLR 493 578 -15 786 212 48 8 chr15 3346284 3346534 -82349220 + L1MD3 LINE L1 7721 7980 -15 23 0 0 0 chr15 3346543 3346566 -82349188 + AT_rich Low_complexity Low_complexity 1 23 0 225 376 26 0 chr15 3348352 3348469 -82347285 + HsTC2 DNA Tc2 35 154 -1744 * 613 248 71 44 chr15 3348466 3348760 -82346994 + HsTC2 DNA Tc2 1233 1710 -188 2802 182 28 39 chr15 3349300 3349336 -82346418 - MSTA-int LTR MaLR -1010 641 606 2365 74 0 7 chr15 3349336 3349632 -82346122 - AluY SINE Alu -17 294 1 2802 182 28 39 chr15 3349632 3349707 -82346047 - MSTA-int LTR MaLR -1045 606 532 2253 136 0 0 chr15 3349707 3350017 -82345737 - AluSg SINE Alu 0 310 1 2802 182 28 39 chr15 3350017 3350552 -82345202 - MSTA-int LTR MaLR -1119 532 1 1938 163 129 5 chr15 3350552 3350933 -82344821 - MSTA LTR MaLR 0 428 1 2325 277 60 27 chr15 3350941 3352370 -82343384 - L1MC3 LINE L1 -1152 4994 3519 356 253 24 0 chr15 3352373 3352456 -82343298 + MLT1E LTR MaLR 350 434 -159 831 92 8 0 chr15 3352846 3352966 -82342788 - AluSg/x SINE Alu -15 295 175 294 328 35 0 chr15 3353027 3353143 -82342611 + HsTC2 DNA Tc2 35 154 -1744 693 225 65 33 chr15 3353180 3353487 -82342267 + HsTC2 DNA Tc2 1281 1773 -125 541 316 128 6 chr15 3353915 3354235 -82341519 - L1M4 LINE L1 -1033 5393 5035 22 88 0 0 chr15 3355319 3355376 -82340378 + AT_rich Low_complexity Low_complexity 1 57 0 600 201 69 0 chr15 3357287 3357461 -82338293 - L1MA7 LINE L1 0 6291 6106 1949 267 37 11 chr15 3357704 3358861 -82336893 - L1MCa LINE L1 -3016 3410 2222 313 222 94 8 chr15 3358866 3358983 -82336771 + L1MCa LINE L1 1938 2064 -4362 550 227 70 0 chr15 3358997 3359169 -82336585 + L1MCa LINE L1 2008 2191 -4235 5653 116 3 15 chr15 3359202 3360047 -82335707 - L1PA14 LINE L1 -2 6159 5339 2104 128 0 0 chr15 3360047 3360344 -82335410 - AluY SINE Alu -12 299 3 5653 116 3 15 chr15 3360344 3361127 -82334627 - L1PA14 LINE L1 -822 5339 4549 495 246 116 30 chr15 3361225 3361457 -82334297 - MLT1E LTR MaLR -341 252 1 599 250 0 0 chr15 3361461 3361605 -82334149 - L1MD3 LINE L1 -282 7713 7570 282 29 0 0 chr15 3361828 3361863 -82333891 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2001 118 34 3 chr15 3361885 3362181 -82333573 + AluSx SINE Alu 1 305 -7 1665 232 101 15 chr15 3362201 3362796 -82332958 - L1MC3 LINE L1 -28 7757 7112 2413 172 45 4 chr15 3362819 3363166 -82332588 - L1PB3 LINE L1 -7 6147 5775 321 26 0 0 chr15 3363166 3363204 -82332550 + (CA)n Simple_repeat Simple_repeat 2 39 0 2413 172 45 4 chr15 3363204 3363321 -82332433 - L1PB3 LINE L1 -379 5775 5664 360 0 0 0 chr15 3363321 3363361 -82332393 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr15 3363360 3363398 -82332356 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1592 179 18 0 chr15 3363398 3363671 -82332083 - AluSx SINE Alu -34 278 1 4021 125 1 19 chr15 3363678 3364326 -82331428 + LTR8 LTR ERV1 55 691 0 481 265 89 51 chr15 3364844 3365101 -82330653 - L1M4 LINE L1 -1127 5019 4753 1859 157 14 7 chr15 3365105 3365398 -82330356 - AluSx SINE Alu -17 295 1 1205 215 16 60 chr15 3365453 3365769 -82329985 - AluJo SINE Alu 0 302 1 22 0 0 0 chr15 3365895 3365917 -82329837 + AT_rich Low_complexity Low_complexity 1 22 0 1702 174 3 24 chr15 3365918 3366212 -82329542 - AluJb SINE Alu -24 288 1 29 28 0 0 chr15 3367381 3367417 -82328337 + AT_rich Low_complexity Low_complexity 1 36 0 780 188 71 67 chr15 3367420 3367675 -82328079 - MER4-int LTR ERV1 -127 6631 6376 595 216 57 18 chr15 3367644 3367821 -82327933 - MER4-int LTR ERV1 -593 6165 3950 * 1733 123 0 16 chr15 3367905 3368156 -82327598 + AluSc SINE Alu 45 291 -18 898 217 46 39 chr15 3368569 3368993 -82326761 - MER4-int LTR ERV1 -2138 4021 2474 739 168 41 38 chr15 3369076 3369353 -82326401 - MER4-int LTR ERV1 -2900 3698 2403 351 255 9 47 chr15 3369472 3369578 -82326176 + L1MC4 LINE L1 6614 6715 -1327 424 226 35 0 chr15 3370146 3370261 -82325493 + L1MCa LINE L1 2101 2219 -4207 423 282 153 16 chr15 3370261 3370509 -82325245 - MLT1E LTR MaLR -248 345 64 21 0 0 0 chr15 3370812 3370833 -82324921 + AT_rich Low_complexity Low_complexity 1 21 0 42 0 0 0 chr15 3370925 3370967 -82324787 + AT_rich Low_complexity Low_complexity 1 42 0 974 205 111 3 chr15 3370968 3371256 -82324498 - L1MC3 LINE L1 -19 7766 7448 580 221 15 60 chr15 3371262 3371392 -82324362 - L1MC3 LINE L1 -384 7401 7282 1704 182 3 23 chr15 3371392 3371699 -82324055 - AluJo SINE Alu -11 301 1 580 221 15 60 chr15 3371699 3371767 -82323987 - L1MC3 LINE L1 -503 7282 7212 6352 119 24 44 chr15 3371767 3372975 -82322779 - MER11C LTR ERVK 0 1071 1 329 315 23 8 chr15 3372976 3373106 -82322648 - L1MC3 LINE L1 -571 7214 7083 1089 281 64 53 chr15 3373124 3374286 -82321468 - L1M4 LINE L1 -1453 4693 3520 455 214 304 6 chr15 3374294 3374462 -82321292 + MLT1E LTR MaLR 376 593 0 730 240 24 12 chr15 3374470 3374720 -82321034 + L1MD3 LINE L1 7731 7983 -12 667 237 29 35 chr15 3375081 3375254 -82320500 + FAM SINE Alu 3 174 -1 2066 128 0 3 chr15 3375315 3375613 -82320141 - AluY SINE Alu -14 297 1 1734 247 36 25 chr15 3375739 3376262 -82319492 + MER54A LTR ERVL 1 529 -372 1622 259 38 30 chr15 3376346 3376876 -82318878 - MLT2B3 LTR ERVL -20 534 1 2512 206 14 26 chr15 3376876 3377293 -82318461 - ERVL-B3 LTR ERVL -7 5757 5337 186 118 0 0 chr15 3377293 3377327 -82318427 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2279 81 3 0 chr15 3377330 3377615 -82318139 - AluY SINE Alu -25 286 1 2512 206 14 26 chr15 3377615 3377818 -82317936 - ERVL-B3 LTR ERVL -429 5335 5140 1778 216 31 33 chr15 3377822 3378247 -82317507 - MSTC LTR MaLR -2 426 3 238 308 67 0 chr15 3378250 3378370 -82317384 - MSTC-int LTR MaLR -1 1734 1607 2360 232 19 52 chr15 3378433 3379123 -82316631 - LTR8 LTR ERV1 -9 682 16 1094 291 19 6 chr15 3379156 3379472 -82316282 - HUERS-P1 LTR ERV1 0 6263 5944 865 210 179 14 chr15 3379551 3379841 -82315913 - PRIMA41-int LTR ERV1 -57 6274 5937 9334 179 40 89 chr15 3380012 3380990 -82314764 - PRIMA41-int LTR ERV1 -524 5422 4398 207 0 0 0 chr15 3380990 3381013 -82314741 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9334 179 40 89 chr15 3381013 3381169 -82314585 - PRIMA41-int LTR ERV1 -1548 4398 4236 1595 202 11 11 chr15 3381169 3381456 -82314298 - AluJo SINE Alu -23 289 3 9334 179 40 89 chr15 3381456 3383340 -82312414 - PRIMA41-int LTR ERV1 -1710 4236 1816 1000 261 77 54 chr15 3383400 3383882 -82311872 - PRIMA41-int LTR ERV1 -4114 3423 2931 2543 223 33 27 chr15 3383897 3384751 -82311003 - PRIMA41-int LTR ERV1 -2594 2286 1280 946 211 150 85 chr15 3384751 3385092 -82310662 - LTR8 LTR ERV1 -364 363 1 838 297 55 72 chr15 3385092 3385622 -82310132 - MSTC-int LTR MaLR -221 1430 923 376 179 0 0 chr15 3385636 3385720 -82310034 + MSTC LTR MaLR 345 428 0 428 231 10 128 chr15 3385720 3385923 -82309831 + MSTC-int LTR MaLR 1 179 -1472 3110 215 13 7 chr15 3385925 3386623 -82309131 - ERVL-B3 LTR ERVL -1001 4763 4062 484 292 26 17 chr15 3386634 3386815 -82308939 - PRIMA41-int LTR ERV1 -1990 5766 5581 1933 116 0 77 chr15 3386815 3387142 -82308612 + AluSg SINE Alu 1 302 -8 484 292 26 17 chr15 3387142 3387193 -82308561 - PRIMA41-int LTR ERV1 -2175 5581 5532 9670 232 62 8 chr15 3387715 3390265 -82305489 - ERVL-B3 LTR ERVL -2904 2860 172 1892 219 46 48 chr15 3390428 3390838 -82304916 - MLT2B3 LTR ERVL -8 546 136 4185 176 22 7 chr15 3390838 3391609 -82304145 - LTR39 LTR ERV1 0 783 1 1892 219 46 48 chr15 3391609 3391745 -82304009 - MLT2B3 LTR ERVL -418 136 1 1259 236 50 11 chr15 3391745 3392105 -82303649 + MER54A LTR ERVL 523 896 -5 450 254 102 44 chr15 3392587 3392822 -82302932 + HsTC2 DNA Tc2 1507 1770 -128 4775 56 0 0 chr15 3392822 3393413 -82302341 + LTR10C LTR ERV1 1 591 0 450 254 102 44 chr15 3393413 3393519 -82302235 + HsTC2 DNA Tc2 1770 1868 -30 501 222 102 6 chr15 3393602 3393778 -82301976 - MER4C LTR ERV1 0 465 273 409 225 48 11 chr15 3393838 3394055 -82301699 - MER4A LTR ERV1 -203 262 6 7356 189 52 59 chr15 3394056 3396189 -82299565 - MER4A-int LTR ERV1 -8 6590 2831 1625 201 3 16 chr15 3396189 3396492 -82299262 + AluJb SINE Alu 1 299 -13 7356 189 52 59 chr15 3396492 3396999 -82298755 - MER4A-int LTR ERV1 -3767 2831 2322 1513 230 0 3 chr15 3397039 3397330 -82298424 - AluJo SINE Alu -22 290 1 1605 186 48 81 chr15 3397380 3397885 -82297869 - MER4C-int LTR ERV1 -1952 2928 2441 415 137 14 0 chr15 3397889 3397962 -82297792 - L1PA15 LINE L1 -18 6147 6074 363 184 122 10 chr15 3398093 3398191 -82297563 - MER4C-int LTR ERV1 -5232 1099 991 304 51 0 0 chr15 3398203 3398242 -82297512 - MER4C-int LTR ERV1 -5764 1773 1735 441 209 23 16 chr15 3398428 3398557 -82297197 - MER4C-int LTR ERV1 -6356 242 113 714 213 25 35 chr15 3398652 3399134 -82296620 - MER4C LTR ERV1 0 695 3 343 324 75 42 chr15 3399359 3399558 -82296196 - L1M4 LINE L1 -1050 5096 4882 2435 84 3 0 chr15 3399558 3399867 -82295887 + AluY SINE Alu 1 310 -1 343 324 75 42 chr15 3399867 3399973 -82295781 - L1M4 LINE L1 -1264 4882 4781 1743 118 95 0 chr15 3399976 3400128 -82295626 - AluSx SINE Alu -24 288 152 189 0 0 0 chr15 3400128 3400149 -82295605 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1743 118 95 0 chr15 3400149 3400259 -82295495 - AluSx SINE Alu -160 152 1 463 193 42 8 chr15 3400460 3400579 -82295175 + LTR47A LTR ERVL 1 123 -329 341 250 12 0 chr15 3400629 3400713 -82295041 + LTR47B LTR ERVL 359 443 0 310 234 0 0 chr15 3401643 3401720 -82294034 + LTR57-int LTR ERVL 1248 1324 -4723 390 326 34 8 chr15 3402343 3402600 -82293154 + LTR57-int LTR ERVL 1852 2086 -1332 521 361 22 26 chr15 3402698 3402947 -82292807 + LTR57-int LTR ERVL 2312 2561 -2782 1839 162 3 10 chr15 3402947 3403244 -82292510 + AluSq SINE Alu 1 295 -18 521 361 22 26 chr15 3403244 3403687 -82292067 + LTR57-int LTR ERVL 2561 3001 -2342 892 266 47 6 chr15 3403896 3404490 -82291264 - L1MCa LINE L1 -3595 2831 2213 1029 146 22 95 chr15 3404496 3404811 -82290943 + L1MCa LINE L1 1925 2216 -4210 410 282 124 71 chr15 3404819 3405142 -82290612 - MLT1E LTR MaLR -253 340 1 659 223 0 0 chr15 3405147 3405295 -82290459 - L1MD3 LINE L1 -283 7712 7565 28 29 0 0 chr15 3405301 3405336 -82290418 + AT_rich Low_complexity Low_complexity 1 35 0 4200 253 68 45 chr15 3405542 3406355 -82289399 - L1MC3 LINE L1 -6 7779 6986 2227 125 0 0 chr15 3406355 3406666 -82289088 - AluY SINE Alu 0 311 1 4200 253 68 45 chr15 3406666 3407447 -82288307 - L1MC3 LINE L1 -799 6986 6134 1814 157 3 26 chr15 3407447 3407759 -82287995 - AluSx SINE Alu -7 305 1 4200 253 68 45 chr15 3407759 3408037 -82287717 - L1MC3 LINE L1 -1651 6134 5864 559 251 36 5 chr15 3408047 3408380 -82287374 - L1MC3 LINE L1 -720 5454 5113 231 213 32 32 chr15 3408377 3408471 -82287283 - L1MC3 LINE L1 -987 5159 5066 * 2299 126 55 2 chr15 3408471 3408869 -82286885 - MSTA LTR MaLR 0 428 10 413 286 82 5 chr15 3408918 3409138 -82286616 - L1MC3 LINE L1 -1121 5025 4789 7069 96 4 19 chr15 3409180 3410253 -82285501 - MER11C LTR ERVK -14 1057 1 6217 201 31 54 chr15 3410265 3412968 -82282786 - L1MA1 LINE L1 -17 6285 3654 1437 198 3 75 chr15 3413926 3414245 -82281509 - AluJo SINE Alu -6 296 1 467 258 258 5 chr15 3414249 3414447 -82281307 + MLT1E LTR MaLR 346 593 0 800 214 30 17 chr15 3414474 3414708 -82281046 + L1MD3 LINE L1 7745 7981 -14 23 0 0 0 chr15 3414714 3414737 -82281017 + AT_rich Low_complexity Low_complexity 1 23 0 766 208 0 0 chr15 3414741 3414885 -82280869 + FRAM SINE Alu 13 156 -20 28 48 0 0 chr15 3415232 3415274 -82280480 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr15 3415472 3415506 -82280248 + (TA)n Simple_repeat Simple_repeat 2 35 0 1543 202 0 4 chr15 3415640 3415917 -82279837 + AluJb SINE Alu 1 276 -36 316 198 12 12 chr15 3415917 3416003 -82279751 + GA-rich Low_complexity Low_complexity 3 88 0 272 301 0 0 chr15 3416799 3416882 -82278872 - MER66A-int LTR ERV1 -6387 735 653 273 333 0 0 chr15 3417603 3417693 -82278061 - MER66A-int LTR ERV1 -971 815 726 774 329 25 33 chr15 3417974 3418369 -82277385 - MER66A-int LTR ERV1 -1342 444 53 1544 81 8 8 chr15 3418390 3418626 -82277128 - L1PA12 LINE L1 -191 5977 5742 850 225 89 52 chr15 3418630 3418954 -82276800 - MER66A LTR ERV1 -46 432 97 3069 275 61 28 chr15 3419114 3420895 -82274859 - L1M4 LINE L1 -744 5402 3564 330 190 52 16 chr15 3420936 3421118 -82274636 + MLT1E LTR MaLR 350 593 0 681 230 34 19 chr15 3421120 3421385 -82274369 + L1MD3 LINE L1 7724 7992 -3 306 325 26 0 chr15 3423501 3423618 -82272136 + HsTC2 DNA Tc2 35 154 -1744 * 688 286 29 58 chr15 3423613 3424096 -82271658 + HsTC2 DNA Tc2 1231 1875 -23 348 353 31 9 chr15 3424366 3424590 -82271164 - L1M4 LINE L1 -1034 5112 4884 1318 240 0 13 chr15 3424724 3425028 -82270726 - AluJo SINE Alu -12 300 1 2848 7 0 0 chr15 3425480 3425788 -82269966 + AluY SINE Alu 1 308 -3 259 78 0 4 chr15 3427069 3427288 -82268466 + AluSx SINE Alu 1 300 0 * 284 301 65 63 chr15 3427285 3427774 -82267980 - LTR38 LTR ERV1 -66 490 1 22 35 0 0 chr15 3428042 3428071 -82267683 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr15 3428182 3428219 -82267535 + (TG)n Simple_repeat Simple_repeat 2 38 0 2679 211 88 21 chr15 3428455 3429162 -82266592 - MER49 LTR ERV1 -169 754 1 1134 208 22 45 chr15 3429163 3429537 -82266217 - MER49-int LTR ERV1 -3 7093 6376 624 212 57 18 chr15 3429506 3429683 -82266071 - MER49-int LTR ERV1 -593 6165 3950 * 1682 106 16 8 chr15 3429767 3430012 -82265742 + AluSc SINE Alu 45 291 -18 261 174 0 151 chr15 3430244 3430330 -82265424 - MER49-int LTR ERV1 -4262 3858 3786 977 207 34 37 chr15 3430417 3430849 -82264905 - LTR49-int LTR ERV1 -2147 4184 3731 756 205 43 75 chr15 3430929 3431344 -82264410 - LTR49-int LTR ERV1 -2900 3698 3297 1662 280 4 6 chr15 3431348 3431827 -82263927 - ERVL-B3 LTR ERVL -3961 1803 1326 1001 187 6 11 chr15 3431831 3432013 -82263741 - AluSp SINE Alu -18 295 115 3296 264 45 20 chr15 3432120 3432321 -82263433 - ERVL-B3 LTR ERVL -4441 1252 1058 826 219 0 18 chr15 3432321 3432490 -82263264 - FRAM SINE Alu 0 166 1 3296 264 45 20 chr15 3432490 3433491 -82262263 - ERVL-B3 LTR ERVL -4635 1058 1 698 236 13 52 chr15 3433491 3433553 -82262201 - MLT2B3 LTR ERVL 0 554 491 315 0 0 0 chr15 3433553 3433588 -82262166 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 698 236 13 52 chr15 3433588 3433754 -82262000 - MLT2B3 LTR ERVL -63 491 335 1539 249 123 40 chr15 3433834 3434775 -82260979 - L1MC3 LINE L1 -913 7152 6134 2575 271 70 24 chr15 3434776 3435182 -82260572 - L1MC3 LINE L1 -725 5733 5347 1569 188 169 5 chr15 3435182 3435550 -82260204 - MSTA LTR MaLR 0 428 1 8038 191 18 22 chr15 3435552 3436590 -82259164 - MSTA-int LTR MaLR -2 1649 608 183 42 0 0 chr15 3436590 3436614 -82259140 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2081 98 0 7 chr15 3436624 3436900 -82258854 - AluY SINE Alu -37 274 1 8038 191 18 22 chr15 3436900 3436967 -82258787 - MSTA-int LTR MaLR -1052 599 533 2283 118 3 0 chr15 3436967 3437271 -82258483 - AluSg SINE Alu 0 310 6 8038 191 18 22 chr15 3437271 3437810 -82257944 - MSTA-int LTR MaLR -1118 533 1 1864 144 155 11 chr15 3437810 3438184 -82257570 - MSTA LTR MaLR 0 428 1 2575 271 70 24 chr15 3438184 3439626 -82256128 - L1MC3 LINE L1 -1110 5348 3799 519 212 264 5 chr15 3439630 3439823 -82255931 + MLT1E LTR MaLR 351 593 0 722 233 29 10 chr15 3439829 3440035 -82255719 + L1MD3 LINE L1 7729 7938 -57 26 0 0 0 chr15 3440035 3440061 -82255693 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 3440089 3440113 -82255641 + AT_rich Low_complexity Low_complexity 1 24 0 1923 248 38 25 chr15 3442284 3443452 -82252302 - L1MC3 LINE L1 -3015 3411 2227 242 215 37 52 chr15 3443447 3443582 -82252172 + L1MCa LINE L1 1936 2068 -4358 * 542 220 45 11 chr15 3443574 3443751 -82252003 + L1MCa LINE L1 2008 2190 -4236 26 30 0 0 chr15 3443751 3443784 -82251970 + AT_rich Low_complexity Low_complexity 1 33 0 5400 116 5 16 chr15 3443788 3444625 -82251129 - L1PA14 LINE L1 -3 6158 5339 2083 100 3 7 chr15 3444625 3444915 -82250839 - AluSc SINE Alu -19 290 2 5400 116 5 16 chr15 3444915 3445699 -82250055 - L1PA14 LINE L1 -822 5339 4547 549 236 88 32 chr15 3445807 3446023 -82249731 - MLT1E LTR MaLR -365 228 1 618 210 3 0 chr15 3446028 3446171 -82249583 - L1MD3 LINE L1 -299 7696 7488 1893 146 36 3 chr15 3446443 3446745 -82249009 + AluSx SINE Alu 1 312 0 1753 240 102 7 chr15 3446762 3447349 -82248405 - L1MC3 LINE L1 -31 7754 7112 2084 153 57 5 chr15 3447372 3447718 -82248036 - L1PB3 LINE L1 -7 6147 5778 393 22 0 0 chr15 3447718 3447764 -82247990 + (CA)n Simple_repeat Simple_repeat 2 47 0 2084 153 57 5 chr15 3447764 3447803 -82247951 - L1PB3 LINE L1 -376 5778 5742 561 138 0 0 chr15 3447904 3447998 -82247756 - L1PB3 LINE L1 -397 5757 5664 378 0 0 0 chr15 3447998 3448040 -82247714 + (TG)n Simple_repeat Simple_repeat 1 42 0 269 129 6 0 chr15 3448056 3448104 -82247650 - Alu SINE Alu -20 282 242 839 283 72 37 chr15 3448141 3448947 -82246807 - L1M4 LINE L1 -1659 4487 3654 1249 195 6 114 chr15 3449903 3450236 -82245518 - AluJo SINE Alu -5 297 1 501 224 265 15 chr15 3450242 3450438 -82245316 + MLT1E LTR MaLR 349 593 0 832 205 30 17 chr15 3450465 3450699 -82245055 + L1MD3 LINE L1 7745 7981 -14 22 0 0 0 chr15 3450705 3450727 -82245027 + AT_rich Low_complexity Low_complexity 1 22 0 737 217 0 0 chr15 3450731 3450874 -82244880 + FRAM SINE Alu 13 155 -21 31 26 0 0 chr15 3451221 3451259 -82244495 + AT_rich Low_complexity Low_complexity 1 38 0 308 194 28 14 chr15 3451500 3451572 -82244182 + L1MCa LINE L1 1996 2068 -4358 195 184 0 0 chr15 3451574 3451612 -82244142 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1482 192 0 38 chr15 3451745 3452032 -82243722 + AluJb SINE Alu 1 276 -36 277 205 13 13 chr15 3452032 3452110 -82243644 + GA-rich Low_complexity Low_complexity 3 80 0 568 213 8 0 chr15 3453380 3453502 -82242252 - LTR47A LTR ERVL -3 449 327 1396 315 43 22 chr15 3453658 3454486 -82241268 - PABL_B-int LTR ERV1 -251 7505 6660 1730 330 44 36 chr15 3455502 3457156 -82238598 - PABL_B-int LTR ERV1 -2945 4177 2511 29 0 0 0 chr15 3509266 3509295 -82186459 + AT_rich Low_complexity Low_complexity 1 29 0 1017 136 81 10 chr15 3509591 3509789 -82185965 - MER101 LTR ERV1 -1 473 262 1710 148 93 0 chr15 3509796 3509918 -82185836 + AluSx SINE Alu 9 118 -194 216 0 0 0 chr15 3509918 3509942 -82185812 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1710 148 93 0 chr15 3509942 3510097 -82185657 + AluSx SINE Alu 118 312 0 719 158 0 0 chr15 3510135 3510255 -82185499 - MER101 LTR ERV1 -354 120 1 300 365 33 39 chr15 3510358 3510539 -82185215 - HAL1 LINE L1 -2326 181 2 653 208 48 24 chr15 3511311 3511518 -82184236 - AluSg/x SINE Alu -11 298 87 1960 123 10 10 chr15 3511740 3512059 -82183695 - AluSx SINE Alu 0 312 1 1989 150 7 3 chr15 3512063 3512357 -82183397 - AluSx SINE Alu -16 296 2 2108 119 44 0 chr15 3512426 3512769 -82182985 + Tigger3(Golem) DNA MER2_type 2605 2962 -67 2241 172 78 38 chr15 3512770 3512970 -82182784 + MER4B LTR ERV1 1 192 -418 1970 138 17 0 chr15 3512970 3513267 -82182487 + AluSx SINE Alu 4 305 -7 2241 172 78 38 chr15 3513267 3513618 -82182136 + MER4B LTR ERV1 192 574 -36 362 286 8 0 chr15 3514072 3514191 -82181563 + L1MEc LINE L1 111 230 -6166 1109 171 5 0 chr15 3514661 3514866 -82180888 + MER47A DNA MER2_type 3 208 -158 440 217 9 17 chr15 3515281 3515429 -82180325 + ALR/Alpha Satellite centromeric 1 146 -62 368 225 25 17 chr15 3515721 3515841 -82179913 - Tigger5 DNA MER2_type -22 2301 2181 379 163 12 12 chr15 3516049 3516135 -82179619 - L1MC3 LINE L1 -203 7582 7497 261 57 0 0 chr15 3516189 3516224 -82179530 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 711 255 18 99 chr15 3516280 3516664 -82179090 - L1MC3 LINE L1 -787 6998 6646 381 230 9 9 chr15 3516668 3516781 -82178973 - L1MC3 LINE L1 -2029 5966 5854 538 245 32 69 chr15 3516781 3516938 -82178816 - L1MC3 LINE L1 -720 5454 5293 2266 91 20 3 chr15 3516938 3517234 -82178520 + AluSq SINE Alu 2 302 -11 538 245 32 69 chr15 3517234 3517521 -82178233 - L1MC3 LINE L1 -881 5293 5013 825 216 9 22 chr15 3517537 3517769 -82177985 - L1MC3 LINE L1 -1304 4842 4614 2667 209 29 18 chr15 3517831 3518535 -82177219 - L1PA16 LINE L1 -3 6165 5487 7879 94 39 20 chr15 3518642 3518707 -82177047 - HSMAR1 DNA Mariner -47 1240 1178 2086 114 0 0 chr15 3518707 3519016 -82176738 - AluSx SINE Alu 0 309 1 7879 94 39 20 chr15 3519016 3520167 -82175587 - HSMAR1 DNA Mariner -109 1178 1 1634 198 13 11 chr15 3520167 3520540 -82175214 - L1PA16 LINE L1 -1683 4463 4090 1498 123 3 78 chr15 3520540 3520822 -82174932 + L1PA15 LINE L1 5901 6163 -2 3285 215 102 55 chr15 3520825 3522074 -82173680 - L1MC3 LINE L1 -621 7164 5858 296 230 93 12 chr15 3522089 3522250 -82173504 - L1MC3 LINE L1 -740 5438 5265 * 1788 124 7 70 chr15 3522212 3522640 -82173114 - L1MA2 LINE L1 0 6304 5265 2259 181 67 85 chr15 3522745 3522777 -82172977 - MER67B LTR ERV1 -144 517 486 3126 176 75 52 chr15 3522777 3523488 -82172266 + LTR8A LTR ERV1 1 727 0 2259 181 67 85 chr15 3523488 3524031 -82171723 - MER67B LTR ERV1 -175 486 1 4608 202 22 18 chr15 3524049 3525188 -82170566 + L1MB2 LINE L1 4638 5771 -400 1220 186 53 9 chr15 3525188 3525414 -82170340 - MER46A DNA MER2_type 0 236 1 4608 202 22 18 chr15 3525414 3525757 -82169997 + L1MB2 LINE L1 5771 6123 -48 824 227 7 7 chr15 3525757 3525907 -82169847 + FRAM SINE Alu 1 150 -16 4608 202 22 18 chr15 3525907 3525943 -82169811 + L1MB2 LINE L1 6123 6157 -14 666 179 50 7 chr15 3526043 3526183 -82169571 + LTR10C LTR ERV1 446 591 0 2247 114 0 0 chr15 3527606 3527905 -82167849 + AluSx SINE Alu 7 305 -7 2445 102 151 5 chr15 3528095 3528486 -82167268 - LTR7 LTR ERV1 -2 448 1 2410 96 48 13 chr15 3528486 3528863 -82166891 - HERVH LTR ERV1 0 7713 7324 1215 163 9 26 chr15 3528863 3529090 -82166664 - HERVH LTR ERV1 -1894 5819 5597 8075 126 1 1 chr15 3529091 3530256 -82165498 - HERVH LTR ERV1 -2567 5146 3994 1552 150 0 4 chr15 3530266 3530512 -82165242 - HERVH LTR ERV1 -3977 3736 3492 1005 120 7 0 chr15 3530502 3530652 -82165102 - HERVH LTR ERV1 -4423 3290 3140 * 14914 110 21 11 chr15 3530646 3533360 -82162394 - HERVH LTR ERV1 -4726 2987 1 2626 90 125 8 chr15 3533362 3533763 -82161991 - LTR7 LTR ERV1 -2 448 1 331 264 39 16 chr15 3534312 3534441 -82161313 - L1MEc LINE L1 -6153 243 112 4315 88 22 0 chr15 3534601 3535228 -82160526 - L1P LINE L1 -1063 5083 4443 5839 34 4 1 chr15 3535328 3536028 -82159726 - L1P LINE L1 -1566 4580 3879 2275 33 3 0 chr15 3536019 3536949 -82158805 + L1PA2 LINE L1 5089 6155 0 * 3356 34 5 0 chr15 3536960 3537344 -82158410 + L1PA4 LINE L1 5770 6155 0 336 292 70 70 chr15 3537589 3537873 -82157881 - HsTC2 DNA Tc2 -198 1700 1241 5138 103 5 1 chr15 3539029 3539691 -82156063 - MER4A LTR ERV1 0 664 1 2811 133 164 30 chr15 3539796 3540337 -82155417 - LTR18B LTR ERVL 0 614 1 2661 246 53 31 chr15 3540486 3541313 -82154441 - L1MDa LINE L1 -3138 3402 2547 2286 73 30 3 chr15 3541313 3541615 -82154139 - AluY SINE Alu -1 310 1 2661 246 53 31 chr15 3541615 3541842 -82153912 - L1MDa LINE L1 -3993 2547 2326 944 201 22 48 chr15 3541852 3542125 -82153629 + L1MCa LINE L1 1955 2220 -4206 983 268 104 19 chr15 3542125 3542442 -82153312 - MLT1E LTR MaLR -249 344 1 571 261 49 0 chr15 3542446 3542588 -82153166 - L1MD3 LINE L1 -282 7713 7565 532 163 0 10 chr15 3542832 3542930 -82152824 - L1MC3 LINE L1 -11 7774 7678 262 277 25 57 chr15 3543035 3543194 -82152560 - L1M4 LINE L1 -2391 3755 3602 3794 234 126 17 chr15 3543221 3544514 -82151240 - L1M4 LINE L1 -1112 5034 3601 382 190 83 33 chr15 3544599 3544700 -82151054 + MLT1E LTR MaLR 281 427 -166 904 199 99 5 chr15 3544758 3544969 -82150785 - MER34 LTR ERV1 -283 259 29 25 51 0 0 chr15 3545546 3545585 -82150169 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr15 3545643 3545683 -82150071 + AT_rich Low_complexity Low_complexity 1 40 0 21886 121 66 1 chr15 3545683 3549018 -82146736 - L1P LINE L1 -818 5336 1785 5840 153 19 83 chr15 3549036 3550304 -82145450 + L1P LINE L1 591 1777 -4369 874 142 39 0 chr15 3550314 3550469 -82145285 - L1M2 LINE L1 -821 5479 5319 465 348 103 11 chr15 3551924 3552275 -82143479 + L1M4 LINE L1 4755 5137 -1009 183 296 19 0 chr15 3552376 3552430 -82143324 + MIR SINE MIR 137 191 -71 863 269 83 28 chr15 3552527 3552962 -82142792 - HsTC2 DNA Tc2 -22 1876 1242 2414 73 0 25 chr15 3552962 3553277 -82142477 - AluY SINE Alu -4 307 1 251 354 35 0 chr15 3553293 3553406 -82142348 - HsTC2 DNA Tc2 -1744 154 38 247 241 0 0 chr15 3553651 3553705 -82142049 - MER54A LTR ERVL -834 67 14 252 218 36 0 chr15 3553903 3553958 -82141796 - MER52A LTR ERV1 0 1755 1699 5005 226 78 47 chr15 3553970 3554510 -82141244 - MER52A LTR ERV1 -270 1485 964 180 0 0 0 chr15 3554510 3554530 -82141224 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5005 226 78 47 chr15 3554530 3555428 -82140326 - MER52A LTR ERV1 -791 964 1 868 246 104 106 chr15 3555611 3556586 -82139168 + LTR28 LTR ERV1 1 1755 0 656 224 64 4 chr15 3556587 3556852 -82138902 + L1M4 LINE L1 5215 5485 -699 552 223 0 9 chr15 3558352 3558464 -82137290 + FLAM_A SINE Alu 20 130 -12 200 278 0 0 chr15 3558914 3558968 -82136786 + MIR SINE MIR 1 54 -208 3033 44 14 0 chr15 3559093 3559460 -82136294 - LTR10C LTR ERV1 -219 372 1 657 103 0 0 chr15 3560297 3560384 -82135370 + AluY SINE Alu 205 291 -20 476 13 66 0 chr15 3560483 3560559 -82135195 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 1663 224 42 8 chr15 3560562 3560919 -82134835 - MLT1A2 LTR MaLR -4 370 2 286 78 20 20 chr15 3560925 3560976 -82134778 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 785 317 65 18 chr15 3561168 3561565 -82134189 + L2 LINE L2 2827 3242 -71 237 33 0 0 chr15 3561700 3561730 -82134024 + (CA)n Simple_repeat Simple_repeat 2 31 0 1991 132 24 7 chr15 3562032 3562356 -82133398 + AluSx SINE Alu 1 312 0 2308 92 0 7 chr15 3567126 3567432 -82128322 + AluSx SINE Alu 1 304 -8 213 255 0 0 chr15 3567498 3567549 -82128205 - MIR SINE MIR -188 74 24 808 103 9 9 chr15 3568421 3568537 -82127217 - AluSg1 SINE Alu -193 116 1 709 294 59 88 chr15 3568537 3569229 -82126525 + L2 LINE L2 2633 3312 -1 237 278 0 14 chr15 3569506 3569578 -82126176 - MIR SINE MIR -64 198 128 297 316 35 18 chr15 3570556 3570670 -82125084 + MIR SINE MIR 20 135 -73 554 269 88 35 chr15 3572044 3572282 -82123472 + L1M4 LINE L1 526 789 -5595 2240 102 6 13 chr15 3572282 3572596 -82123158 - AluSx SINE Alu 0 312 1 554 269 88 35 chr15 3572596 3572699 -82123055 + L1M4 LINE L1 789 885 -5499 * 1698 213 35 25 chr15 3572695 3573206 -82122548 + L1M4 LINE L1 1173 1688 -4696 351 280 82 78 chr15 3573306 3573574 -82122180 + L1M4 LINE L1 5064 5332 -1050 2562 39 39 3 chr15 3573731 3574098 -82121656 + L1PA4 LINE L1 5785 6163 0 266 239 72 43 chr15 3574266 3574404 -82121350 - HsTC2 DNA Tc2 -25 1873 1732 847 155 19 0 chr15 3574404 3574565 -82121189 + L1M2 LINE L1 5509 5672 -619 446 311 75 23 chr15 3574567 3574872 -82120882 - HsTC2 DNA Tc2 -169 1729 1233 2422 84 3 0 chr15 3575535 3575843 -82119911 + AluSx SINE Alu 1 309 -3 856 236 209 27 chr15 3577041 3577620 -82118134 + L1M4 LINE L1 4593 5301 -845 1619 141 15 19 chr15 3577620 3577890 -82117864 + AluJb SINE Alu 26 294 -18 856 236 209 27 chr15 3577890 3577950 -82117804 + L1M4 LINE L1 5301 5349 -797 2384 208 79 25 chr15 3577991 3578530 -82117224 + L1MC3 LINE L1 7072 7656 -129 2190 61 0 48 chr15 3578530 3578863 -82116891 + AluY SINE Alu 1 319 0 2384 208 79 25 chr15 3578863 3578992 -82116762 + L1MC3 LINE L1 7656 7777 -8 200 173 0 39 chr15 3579100 3579152 -82116602 + T-rich Low_complexity Low_complexity 2 51 0 474 247 34 14 chr15 3579228 3579374 -82116380 + L1MD3 LINE L1 7565 7713 -282 672 296 71 40 chr15 3579389 3579713 -82116041 + MLT1E LTR MaLR 12 345 -248 969 158 43 63 chr15 3579713 3579752 -82116002 - L1MCa LINE L1 -4207 2219 2181 2176 119 0 0 chr15 3579752 3580047 -82115707 + AluSx SINE Alu 1 295 -17 969 158 43 63 chr15 3580047 3580310 -82115444 - L1MCa LINE L1 -4245 2181 1923 2438 228 46 27 chr15 3580310 3580445 -82115309 + L1MCa LINE L1 2212 2343 -4083 1521 176 3 44 chr15 3580445 3580763 -82114991 + AluJo SINE Alu 1 305 -7 2438 228 46 27 chr15 3580763 3581814 -82113940 + L1MCa LINE L1 2343 3412 -3014 2764 182 8 45 chr15 3583215 3583861 -82111893 + MER54B LTR ERVL 1 678 -115 311 155 0 52 chr15 3586367 3586425 -82109329 - HERVL74 LTR ERVL -1048 4637 4583 * 957 144 7 0 chr15 3586407 3586560 -82109194 - HERVL74 LTR ERVL -1612 4073 3920 829 183 7 13 chr15 3586565 3586718 -82109036 - HERVL74 LTR ERVL -2043 3642 3491 1980 220 33 27 chr15 3586719 3587241 -82108513 - HERVL74 LTR ERVL -2353 3332 2808 2288 194 25 15 chr15 3587322 3587842 -82107912 - HERVL74 LTR ERVL -2873 2812 2288 1453 107 60 0 chr15 3587842 3588057 -82107697 - MER30 DNA MER1_type 0 230 3 186 103 0 0 chr15 3588278 3588307 -82107447 + (TC)n Simple_repeat Simple_repeat 2 30 0 1848 181 19 2 chr15 3589652 3590282 -82105472 + MER54B LTR ERVL 1 682 -111 284 247 158 0 chr15 3590594 3590752 -82105002 + L1MC3 LINE L1 370 552 -6055 21 57 0 0 chr15 3591600 3591635 -82104119 + AT_rich Low_complexity Low_complexity 1 35 0 7580 29 1 1 chr15 3591642 3592726 -82103028 + L1PA4 LINE L1 5072 6155 0 261 316 79 9 chr15 3593378 3593695 -82102059 + L1M4 LINE L1 4754 5092 -1054 337 332 157 9 chr15 3593741 3593964 -82101790 + MIR SINE MIR 7 262 0 280 240 70 23 chr15 3594003 3594132 -82101622 - HsTC2 DNA Tc2 -28 1870 1736 747 170 9 2 chr15 3594193 3594348 -82101406 + L1M2 LINE L1 5547 5707 -595 1567 271 42 24 chr15 3594615 3595287 -82100467 + L1MC3 LINE L1 3918 4609 -1817 6890 60 13 2 chr15 3595287 3596654 -82099100 - L1PA7 LINE L1 -2 6152 4774 1567 271 42 24 chr15 3596654 3596820 -82098934 + L1MC3 LINE L1 4609 4771 -1655 747 141 63 0 chr15 3596821 3596963 -82098791 - L1MA4A LINE L1 -260 6043 5893 1473 89 31 0 chr15 3596963 3597188 -82098566 + L1MA4A LINE L1 6066 6297 -6 2425 232 46 37 chr15 3597190 3598153 -82097601 + L1MC3 LINE L1 4762 5734 -730 1122 246 113 15 chr15 3598153 3598429 -82097325 + L1MC3 LINE L1 6134 6381 -1684 438 20 0 0 chr15 3598429 3598480 -82097274 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1122 246 113 15 chr15 3598480 3598671 -82097083 + L1MC3 LINE L1 6381 6647 -1418 1120 265 11 23 chr15 3598683 3599030 -82096724 + L1MC3 LINE L1 6792 7134 -931 * 14085 204 105 29 chr15 3599027 3603746 -82092008 + L1P3 LINE L1 5 5184 -1277 2033 135 10 0 chr15 3605820 3606116 -82089638 + AluSg SINE Alu 1 299 -11 805 193 48 70 chr15 3606244 3606514 -82089240 - LTR48B LTR ERV1 0 644 381 1474 174 189 10 chr15 3606514 3606917 -82088837 - LTR48 LTR ERV1 -312 475 1 2139 96 7 0 chr15 3607040 3607332 -82088422 + AluY SINE Alu 14 307 -4 23 33 0 0 chr15 3607356 3607386 -82088368 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 3607811 3607833 -82087921 + AT_rich Low_complexity Low_complexity 1 22 0 588 200 8 0 chr15 3607979 3608099 -82087655 - MER70A LTR ERVL -313 159 39 818 219 39 32 chr15 3608138 3608421 -82087333 - L1ME1 LINE L1 -118 6048 5764 1838 238 62 32 chr15 3608658 3608832 -82086922 - L1ME1 LINE L1 -918 5228 5061 405 0 0 0 chr15 3608832 3608877 -82086877 + (TG)n Simple_repeat Simple_repeat 1 45 0 1540 189 18 4 chr15 3608878 3609158 -82086596 - AluJb SINE Alu -28 284 1 1838 238 62 32 chr15 3609158 3609802 -82085952 - L1ME1 LINE L1 -1084 5062 4383 2513 61 3 6 chr15 3611606 3611918 -82083836 - AluY SINE Alu 0 311 1 1725 221 8 3 chr15 3612428 3612790 -82082964 - MER54B LTR ERVL -428 365 2 348 234 140 37 chr15 3612980 3613194 -82082560 - HsTC2 DNA Tc2 -256 1642 1231 259 261 14 0 chr15 3613191 3613260 -82082494 - HsTC2 DNA Tc2 -1747 151 82 * 321 318 13 26 chr15 3614243 3614397 -82081357 - MLT1E LTR MaLR -441 152 1 692 187 43 0 chr15 3614401 3614540 -82081214 - L1MD3 LINE L1 -282 7713 7569 1620 201 0 7 chr15 3614606 3614890 -82080864 + AluJb SINE Alu 1 282 -30 1351 131 0 5 chr15 3614908 3615106 -82080648 - AluSg/x SINE Alu -30 280 84 23 33 0 0 chr15 3615289 3615319 -82080435 + AT_rich Low_complexity Low_complexity 1 30 0 3262 236 87 50 chr15 3615319 3616182 -82079572 - L1MC3 LINE L1 -19 7766 6833 239 0 32 0 chr15 3616182 3616213 -82079541 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3262 236 87 50 chr15 3616213 3616724 -82079030 - L1MC3 LINE L1 -952 6833 6342 479 287 80 3 chr15 3616773 3617059 -82078695 - L1MC3 LINE L1 -1624 6161 5854 2607 212 45 150 chr15 3617068 3618138 -82077616 - L1MC3 LINE L1 -725 5453 4272 2048 150 0 0 chr15 3618138 3618432 -82077322 - AluSq SINE Alu -19 294 1 2607 212 45 150 chr15 3618432 3618482 -82077272 - L1MC3 LINE L1 -1906 4272 4218 1280 205 0 8 chr15 3618482 3618721 -82077033 - AluJo SINE Alu -75 237 1 2607 212 45 150 chr15 3618721 3618735 -82077019 - L1MC3 LINE L1 -1960 4218 4204 2169 99 0 3 chr15 3618735 3619018 -82076736 - AluSx SINE Alu -20 292 11 2607 212 45 150 chr15 3619018 3619818 -82075936 - L1MC3 LINE L1 -1974 4204 3520 359 234 213 25 chr15 3619818 3620015 -82075739 + MLT1E LTR MaLR 346 622 -2 645 226 50 13 chr15 3620016 3620255 -82075499 + L1MD3 LINE L1 7721 7968 -27 4504 184 23 21 chr15 3620259 3621264 -82074490 - L1MA7 LINE L1 -2 6289 5286 3844 98 8 6 chr15 3621264 3621774 -82073980 - MER9 LTR ERVK 0 511 1 4504 184 23 21 chr15 3621774 3621799 -82073955 - L1MA7 LINE L1 -1005 5286 5263 4200 94 25 4 chr15 3622435 3622987 -82072767 - LTR6A LTR ERV1 0 564 1 3706 226 79 21 chr15 3624024 3624874 -82070880 + MER54A LTR ERVL 3 901 0 1027 247 87 31 chr15 3625172 3625630 -82070124 + HsTC2 DNA Tc2 1216 1875 -23 234 319 21 11 chr15 3625714 3625808 -82069946 - MIR SINE MIR -36 226 132 22 80 0 0 chr15 3626086 3626136 -82069618 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3627627 3627925 -82067829 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3627940 3628296 -82067458 - MER47A DNA MER2_type -1 365 4 322 256 12 0 chr15 3628703 3628789 -82066965 - L1MEc LINE L1 -6210 186 100 2330 95 0 3 chr15 3628846 3629141 -82066613 + AluSc SINE Alu 1 294 -15 2495 171 38 71 chr15 3629405 3629703 -82066051 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3629703 3629999 -82065755 + AluSp SINE Alu 1 297 -16 2495 171 38 71 chr15 3629999 3630188 -82065566 - MER7C DNA MER2_type -2732 296 133 1783 156 3 59 chr15 3630188 3630508 -82065246 + AluSx SINE Alu 1 302 -10 2495 171 38 71 chr15 3630508 3630626 -82065128 - MER7C DNA MER2_type -2895 133 13 2054 93 14 4 chr15 3630864 3631143 -82064611 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3631156 3631297 -82064457 - HsTC2 DNA Tc2 -344 1554 1231 2356 78 0 10 chr15 3632290 3632597 -82063157 + AluY SINE Alu 2 305 -6 1941 285 32 22 chr15 3633430 3633512 -82062242 - L1MCa LINE L1 -3014 3412 3332 198 0 0 0 chr15 3633512 3633534 -82062220 + (TA)n Simple_repeat Simple_repeat 2 23 0 2390 54 40 0 chr15 3633535 3633831 -82061923 - AluSg SINE Alu 0 310 3 1941 285 32 22 chr15 3633831 3634199 -82061555 - L1MCa LINE L1 -3094 3332 2969 2892 88 3 0 chr15 3634199 3634553 -82061201 + THE1A LTR MaLR 1 355 0 1941 285 32 22 chr15 3634553 3634920 -82060834 - L1MCa LINE L1 -3457 2969 2584 1111 108 0 7 chr15 3634921 3635069 -82060685 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3635125 3635244 -82060510 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3635242 3635293 -82060461 - L1ME LINE L1 -706 5740 5690 * 1399 141 49 20 chr15 3635280 3635373 -82060381 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3635373 3635682 -82060072 - AluSx SINE Alu 0 314 1 1399 141 49 20 chr15 3635682 3635932 -82059822 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3635932 3636031 -82059723 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3636031 3636055 -82059699 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3636055 3636074 -82059680 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3636079 3636212 -82059542 - MER41E LTR ERV1 -335 177 23 5565 228 77 43 chr15 3636649 3636806 -82058948 - L1MC3 LINE L1 -6 7779 7629 2086 117 0 3 chr15 3636806 3637123 -82058631 - AluSx SINE Alu 0 316 1 5565 228 77 43 chr15 3637123 3638823 -82056931 - L1MC3 LINE L1 -156 7629 5858 2011 132 13 7 chr15 3638836 3639140 -82056614 - AluSq SINE Alu -7 306 1 1428 251 71 18 chr15 3639141 3639778 -82055976 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3639778 3640126 -82055628 - MER52A LTR ERV1 0 1755 1410 1073 282 8 56 chr15 3640149 3640761 -82054993 - MER52A LTR ERV1 -570 1185 464 1138 184 41 33 chr15 3640761 3641006 -82054748 - LTR12 LTR ERV1 -251 463 217 1040 244 87 31 chr15 3641994 3642452 -82053302 + HsTC2 DNA Tc2 1216 1875 -23 251 267 61 61 chr15 3642527 3642658 -82053096 - MIR SINE MIR -36 226 96 22 80 0 0 chr15 3642899 3642949 -82052805 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3644439 3644737 -82051017 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3644752 3645108 -82050646 - MER47A DNA MER2_type -1 365 4 513 268 14 0 chr15 3645463 3645601 -82050153 - L1MEc LINE L1 -6157 239 100 2365 95 0 0 chr15 3645658 3645952 -82049802 + AluSc SINE Alu 1 294 -15 2511 170 38 71 chr15 3646216 3646514 -82049240 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3646514 3646810 -82048944 + AluSp SINE Alu 1 297 -16 2511 170 38 71 chr15 3646810 3646999 -82048755 - MER7C DNA MER2_type -2732 296 133 1845 153 0 59 chr15 3646999 3647319 -82048435 + AluSx SINE Alu 1 301 -11 2511 170 38 71 chr15 3647319 3647437 -82048317 - MER7C DNA MER2_type -2895 133 13 2292 75 7 0 chr15 3647675 3647955 -82047799 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3647967 3648108 -82047646 - HsTC2 DNA Tc2 -344 1554 1231 2352 84 0 10 chr15 3649101 3649412 -82046342 + AluY SINE Alu 2 309 -2 1818 279 27 43 chr15 3650246 3650351 -82045403 - L1MCa LINE L1 -3014 3412 3307 2306 62 41 0 chr15 3650351 3650643 -82045111 - AluSg SINE Alu -4 306 3 1818 279 27 43 chr15 3650643 3651011 -82044743 - L1MCa LINE L1 -3119 3307 2955 2931 82 3 0 chr15 3651011 3651365 -82044389 + THE1A LTR MaLR 1 355 0 1818 279 27 43 chr15 3651365 3651732 -82044022 - L1MCa LINE L1 -3471 2955 2584 1111 108 0 7 chr15 3651733 3651881 -82043873 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3651937 3652056 -82043698 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3652054 3652105 -82043649 - L1ME LINE L1 -706 5740 5690 * 1401 138 45 20 chr15 3652092 3652185 -82043569 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3652185 3652494 -82043260 - AluSx SINE Alu 0 314 1 1401 138 45 20 chr15 3652494 3652745 -82043009 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3652745 3652844 -82042910 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3652844 3652868 -82042886 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3652868 3652887 -82042867 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3652892 3653025 -82042729 - MER41E LTR ERV1 -335 177 23 5631 230 77 40 chr15 3653462 3653616 -82042138 - L1MC3 LINE L1 -6 7779 7632 2086 117 0 3 chr15 3653616 3653948 -82041806 - AluSx SINE Alu 0 331 1 5631 230 77 40 chr15 3653948 3655647 -82040107 - L1MC3 LINE L1 -153 7632 5858 2138 133 7 0 chr15 3655660 3655962 -82039792 - AluSx SINE Alu -8 304 1 1438 252 68 18 chr15 3655963 3656602 -82039152 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3656602 3656950 -82038804 - MER52A LTR ERV1 0 1755 1410 345 244 22 0 chr15 3656973 3657063 -82038691 - MER52A LTR ERV1 -570 1185 1094 1050 296 6 66 chr15 3657068 3657585 -82038169 - MER52A LTR ERV1 -806 949 464 2225 139 88 25 chr15 3657585 3657981 -82037773 - LTR12 LTR ERV1 -251 463 43 553 275 119 24 chr15 3657981 3658382 -82037372 - MER52A LTR ERV1 -635 643 29 601 199 72 48 chr15 3658396 3658562 -82037192 - L1MC3 LINE L1 -1361 4785 4616 834 224 0 0 chr15 3659868 3660043 -82035711 - AluJb SINE Alu 0 306 132 744 278 68 23 chr15 3660405 3660714 -82035040 + HsTC2 DNA Tc2 1227 1725 -173 902 123 71 0 chr15 3660716 3660871 -82034883 - L1M2 LINE L1 -618 5673 5508 346 168 106 9 chr15 3660896 3661009 -82034745 + HsTC2 DNA Tc2 1754 1877 -21 358 290 172 11 chr15 3661071 3661257 -82034497 - MIR SINE MIR -40 222 7 383 280 84 84 chr15 3661292 3661388 -82034366 - L1M4 LINE L1 -1050 5096 5001 2000 125 18 0 chr15 3661388 3661667 -82034087 + AluSg SINE Alu 1 284 -26 383 280 84 84 chr15 3661667 3661913 -82033841 - L1M4 LINE L1 -1144 5002 4754 198 0 0 0 chr15 3662044 3662066 -82033688 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4202 245 41 38 chr15 3663799 3665146 -82030608 + L1PA13 LINE L1 1 1409 -5378 4315 135 0 5 chr15 3665149 3665778 -82029976 + L1PA15 LINE L1 5533 6158 -7 888 148 8 0 chr15 3666411 3666539 -82029215 + AluSq/x SINE Alu 5 133 -179 1970 141 3 0 chr15 3666543 3666826 -82028928 + AluSg SINE Alu 2 285 -25 216 0 0 0 chr15 3666899 3666923 -82028831 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 488 329 78 13 chr15 3667162 3667393 -82028361 - L1MEc LINE L1 -6089 307 62 551 231 111 53 chr15 3667772 3667997 -82027757 - HsTC2 DNA Tc2 -246 1652 1239 233 310 69 45 chr15 3668517 3668807 -82026947 - L2 LINE L2 -62 3210 2914 246 226 0 0 chr15 3669022 3669075 -82026679 + L1MCa LINE L1 2074 2126 -4300 701 185 15 0 chr15 3669120 3669255 -82026499 + L1MCa LINE L1 2080 2216 -4210 366 342 76 11 chr15 3669318 3669502 -82026252 - MLT1E LTR MaLR -330 263 68 2817 218 11 44 chr15 3669506 3670122 -82025632 - L1MA7 LINE L1 -353 5938 5303 1633 194 11 0 chr15 3670122 3670406 -82025348 - AluJo SINE Alu -25 287 1 2239 93 27 0 chr15 3670416 3670716 -82025038 - AluSx SINE Alu -4 308 1 2817 218 11 44 chr15 3670716 3670785 -82024969 - L1MA7 LINE L1 -997 5294 5263 685 48 0 0 chr15 3671259 3671343 -82024411 + MSTB LTR MaLR 1 84 -342 2104 176 72 17 chr15 3671366 3671770 -82023984 + MSTB LTR MaLR 1 426 0 2304 95 0 25 chr15 3672637 3672954 -82022800 + AluSc SINE Alu 1 309 0 2301 101 3 0 chr15 3673732 3674030 -82021724 + AluSp SINE Alu 1 299 -14 3208 239 97 3 chr15 3674508 3675272 -82020482 + MER54A LTR ERVL 59 894 -7 2054 94 63 23 chr15 3675396 3675695 -82020059 + AluSp SINE Alu 1 311 -2 1376 200 28 39 chr15 3675722 3676007 -82019747 + AluJo SINE Alu 1 282 -30 2256 211 33 7 chr15 3676147 3676568 -82019186 + MSTB1 LTR MaLR 1 432 0 504 258 102 27 chr15 3676660 3676885 -82018869 + HsTC2 DNA Tc2 1235 1652 -246 1375 133 0 0 chr15 3676894 3677082 -82018672 - AluSg/x SINE Alu -12 298 111 2435 67 0 10 chr15 3677083 3677381 -82018373 - AluY SINE Alu -11 300 6 266 315 80 24 chr15 3677385 3677598 -82018156 + HsTC2 DNA Tc2 1649 1873 -25 191 370 10 10 chr15 3677651 3677751 -82018003 - MIR SINE MIR -22 240 141 241 289 70 30 chr15 3677872 3678073 -82017681 - L1M4 LINE L1 -1049 5097 4889 311 144 0 178 chr15 3680482 3680572 -82015182 - MER47A DNA MER2_type 0 366 291 1762 166 14 0 chr15 3680573 3680869 -82014885 - MER47A DNA MER2_type -44 322 23 302 333 30 0 chr15 3681316 3681481 -82014273 - L1MEc LINE L1 -6137 259 90 2409 197 36 60 chr15 3681792 3682219 -82013535 - MER7C DNA MER2_type -2427 601 165 2435 65 0 7 chr15 3682219 3682525 -82013229 + AluY SINE Alu 1 304 -7 2409 197 36 60 chr15 3682525 3682572 -82013182 - MER7C DNA MER2_type -2863 165 118 2353 95 0 0 chr15 3682572 3682867 -82012887 + AluSg SINE Alu 1 295 -15 2409 197 36 60 chr15 3682867 3683005 -82012749 - MER7C DNA MER2_type -2910 118 3 528 159 86 73 chr15 3683199 3683350 -82012404 - HsTC2 DNA Tc2 -332 1566 1238 889 77 0 0 chr15 3683444 3683561 -82012193 + AluY SINE Alu 195 311 0 629 206 0 0 chr15 3683609 3683716 -82012038 + FAM SINE Alu 58 164 -21 2056 270 45 26 chr15 3685441 3686310 -82009444 - L1M4 LINE L1 -3014 3132 2248 3311 205 35 42 chr15 3686379 3687358 -82008396 - L1MA8 LINE L1 -47 6313 2235 241 163 0 0 chr15 3687358 3687401 -82008353 + LTR30 LTR ERV1 1 43 -679 410 172 49 93 chr15 3687401 3687595 -82008159 + LTR12 LTR ERV1 44 289 -425 269 210 16 0 chr15 3687595 3687657 -82008097 + LTR30 LTR ERV1 556 618 -104 2576 39 3 7 chr15 3687809 3688118 -82007636 + AluY SINE Alu 1 308 -3 216 309 147 0 chr15 3688317 3688385 -82007369 + L2 LINE L2 3192 3269 -44 904 247 63 28 chr15 3688437 3688692 -82007062 - LTR48B LTR ERV1 0 644 381 1189 178 230 57 chr15 3688692 3688907 -82006847 - LTR48 LTR ERV1 -312 475 298 2269 109 0 0 chr15 3688907 3689209 -82006545 - AluSg SINE Alu -8 302 1 1189 178 230 57 chr15 3689209 3689398 -82006356 - LTR48 LTR ERV1 -489 298 1 831 202 98 38 chr15 3689520 3689703 -82006051 + AluJo SINE Alu 85 278 -34 420 20 0 0 chr15 3689703 3689752 -82006002 + (TC)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr15 3689751 3689779 -82005975 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1137 112 12 0 chr15 3689779 3689940 -82005814 + AluSg/x SINE Alu 135 297 -13 186 0 28 56 chr15 3689943 3689979 -82005775 + (TA)n Simple_repeat Simple_repeat 1 35 0 48 95 0 0 chr15 3691679 3691763 -82003991 + AT_rich Low_complexity Low_complexity 1 84 0 719 94 0 28 chr15 3692770 3692876 -82002878 - FLAM_C SINE Alu -4 139 37 1312 184 58 41 chr15 3692921 3693263 -82002491 - MLT1B LTR MaLR 0 390 43 1390 205 85 53 chr15 3693264 3693366 -82002388 - MER39 LTR ERV1 0 707 610 2139 112 0 3 chr15 3693366 3693660 -82002094 - AluSq SINE Alu -20 293 1 1390 205 85 53 chr15 3693660 3694038 -82001716 - MER39 LTR ERV1 -97 610 4 2459 54 0 7 chr15 3694318 3694616 -82001138 - AluY SINE Alu -15 296 1 2175 113 7 0 chr15 3694678 3694970 -82000784 - AluSx SINE Alu -18 294 1 2379 85 0 3 chr15 3694975 3695282 -82000472 - AluY SINE Alu -4 307 2 287 313 0 0 chr15 3695318 3695398 -82000356 - L1ME1 LINE L1 -30 6136 6057 10312 198 36 10 chr15 3695399 3697024 -81998730 - MER70B-int LTR ERVL -1326 3697 2008 2342 109 0 0 chr15 3697024 3697328 -81998426 + AluSq SINE Alu 1 304 -9 10312 198 36 10 chr15 3697328 3697727 -81998027 - MER70B-int LTR ERVL -3015 2008 1621 5643 189 51 14 chr15 3697737 3697798 -81997956 - MER70B-int LTR ERVL -3867 1156 1099 1984 125 21 0 chr15 3697798 3698087 -81997667 - AluSg SINE Alu -15 295 1 5643 189 51 14 chr15 3698087 3699140 -81996614 - MER70B-int LTR ERVL -3924 1099 1 2020 225 19 16 chr15 3699144 3699629 -81996125 - MER70B LTR ERVL -2 576 91 797 239 0 6 chr15 3699630 3699789 -81995965 - MER70B LTR ERVL -420 158 1 512 256 211 0 chr15 3699792 3700015 -81995739 - L1ME1 LINE L1 -127 6039 5770 818 132 8 0 chr15 3700030 3700151 -81995603 - AluSp/q SINE Alu -21 292 171 23 33 0 0 chr15 3700157 3700187 -81995567 + AT_rich Low_complexity Low_complexity 1 30 0 773 182 0 198 chr15 3700236 3700314 -81995440 - L1ME1 LINE L1 -493 5671 5572 1903 144 3 33 chr15 3700314 3700449 -81995305 + AluSx SINE Alu 1 138 -174 2145 106 0 14 chr15 3700449 3700732 -81995022 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr15 3700732 3700770 -81994984 + (CA)n Simple_repeat Simple_repeat 1 38 0 1903 144 3 33 chr15 3700770 3700939 -81994815 + AluSx SINE Alu 136 297 -15 773 182 0 198 chr15 3700939 3701062 -81994692 - L1ME1 LINE L1 -592 5572 5559 311 59 0 20 chr15 3701062 3701113 -81994641 + (TG)n Simple_repeat Simple_repeat 1 50 0 773 182 0 198 chr15 3701113 3701327 -81994427 - L1ME1 LINE L1 -605 5559 5285 832 259 55 64 chr15 3701378 3701476 -81994278 - L1ME1 LINE L1 -917 5229 5132 2250 110 3 0 chr15 3701476 3701776 -81993978 - AluSx SINE Alu -11 301 1 832 259 55 64 chr15 3701776 3702132 -81993622 - L1ME1 LINE L1 -1014 5132 4779 203 224 0 20 chr15 3702132 3702181 -81993573 + (TA)n Simple_repeat Simple_repeat 2 49 0 1197 248 48 48 chr15 3702184 3702269 -81993485 - L1ME1 LINE L1 -1330 4816 4732 2198 96 3 0 chr15 3702269 3702575 -81993179 + AluSp SINE Alu 1 307 0 1197 248 48 48 chr15 3702575 3702755 -81992999 - L1ME1 LINE L1 -1414 4732 4553 2262 101 0 7 chr15 3702755 3703051 -81992703 + AluSg SINE Alu 1 294 -16 1197 248 48 48 chr15 3703051 3703283 -81992471 - L1ME1 LINE L1 -1592 4554 4317 2144 110 7 0 chr15 3704311 3704603 -81991151 + AluSx SINE Alu 1 294 -18 453 50 0 0 chr15 3705166 3705226 -81990528 + (CGGGGG)n Simple_repeat Simple_repeat 2 61 0 2057 82 0 94 chr15 3705841 3706183 -81989571 - AluSc SINE Alu 0 309 1 1695 233 22 0 chr15 3706307 3706663 -81989091 - MER54B LTR ERVL -429 364 1 738 230 146 42 chr15 3706797 3707132 -81988622 - HsTC2 DNA Tc2 -122 1776 1231 278 259 0 0 chr15 3707128 3707186 -81988568 - HsTC2 DNA Tc2 -1756 142 85 * 22 0 0 0 chr15 3707197 3707219 -81988535 + AT_rich Low_complexity Low_complexity 1 22 0 2186 83 10 20 chr15 3707266 3707567 -81988187 - AluSq SINE Alu -15 298 1 1164 178 18 4 chr15 3707862 3708087 -81987667 - AluJb SINE Alu -1 311 84 404 211 16 24 chr15 3709211 3709334 -81986420 - L1ME1 LINE L1 -2973 3173 3052 681 219 7 0 chr15 3709367 3709504 -81986250 - L1MD3 LINE L1 -282 7713 7576 1430 213 3 56 chr15 3709588 3709912 -81985842 + AluJb SINE Alu 1 307 -5 2651 221 126 12 chr15 3710008 3710352 -81985402 - L1MC3 LINE L1 -11 7774 7471 2405 71 3 0 chr15 3710352 3710646 -81985108 - AluY SINE Alu -16 295 1 2651 221 126 12 chr15 3710646 3711100 -81984654 - L1MC3 LINE L1 -314 7471 6885 646 193 39 8 chr15 3711105 3711252 -81984502 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 3711602 3711677 -81984077 + MER54A LTR ERVL 1 83 -818 1932 129 20 14 chr15 3711677 3711972 -81983782 + AluSx SINE Alu 1 297 -15 439 253 0 108 chr15 3711972 3712090 -81983664 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 3712214 3712297 -81983457 - MIR SINE MIR -39 223 141 2240 118 0 7 chr15 3712460 3712766 -81982988 + AluSx SINE Alu 1 304 -8 243 274 154 30 chr15 3712822 3713056 -81982698 - L1 LINE L1 -1125 5021 4759 3821 135 47 72 chr15 3714652 3715361 -81980393 - LTR8 LTR ERV1 0 691 1 1869 124 11 28 chr15 3715468 3715750 -81980004 + AluSg SINE Alu 1 277 -33 3529 122 16 2 chr15 3715750 3716252 -81979502 + LTR10D LTR ERV1 4 512 -1 3954 96 49 2 chr15 3716547 3717076 -81978678 - MER41A LTR ERV1 0 554 1 28 48 0 0 chr15 3717159 3717201 -81978553 + AT_rich Low_complexity Low_complexity 1 42 0 1751 181 47 0 chr15 3717445 3717788 -81977966 - MER47A DNA MER2_type 0 366 8 771 153 0 0 chr15 3717970 3718081 -81977673 + AluSg/x SINE Alu 189 299 -10 3300 173 22 10 chr15 3718103 3718697 -81977057 - MER7C DNA MER2_type 0 602 2 266 238 38 76 chr15 3718903 3719008 -81976746 - HsTC2 DNA Tc2 -345 1553 1277 257 246 98 0 chr15 3719039 3719100 -81976654 - HsTC2 DNA Tc2 -1747 151 85 322 245 19 9 chr15 3720845 3720951 -81974803 - L1 LINE L1 -3014 3132 3026 35 0 0 0 chr15 3720951 3720986 -81974768 + AT_rich Low_complexity Low_complexity 1 35 0 2132 98 0 7 chr15 3720986 3721281 -81974473 - AluY SINE Alu -18 293 1 2320 110 7 0 chr15 3721285 3721593 -81974161 - AluSq SINE Alu -3 310 1 594 232 40 27 chr15 3721630 3721854 -81973900 - L1 LINE L1 -3138 3008 2782 240 139 0 0 chr15 3721854 3721897 -81973857 - MER49 LTR ERV1 0 923 881 * 4141 158 27 22 chr15 3721893 3721996 -81973758 - MER49 LTR ERV1 -206 717 616 2291 113 0 0 chr15 3721996 3722296 -81973458 - AluSx SINE Alu -12 300 1 4141 158 27 22 chr15 3722296 3722902 -81972852 - MER49 LTR ERV1 -307 616 5 840 246 86 4 chr15 3722907 3723187 -81972567 - L1 LINE L1 -3588 2558 2256 694 203 22 11 chr15 3723190 3723372 -81972382 - L1MA8 LINE L1 -2 6569 6386 1034 141 7 0 chr15 3723372 3723521 -81972233 - AluJb SINE Alu -34 278 129 1776 200 44 69 chr15 3723543 3724328 -81971426 - L1MA8 LINE L1 -192 6379 5576 2553 47 0 10 chr15 3724328 3724625 -81971129 - AluY SINE Alu -17 294 1 1776 200 44 69 chr15 3724625 3724934 -81970820 - L1MA8 LINE L1 -995 5576 2213 402 189 79 0 chr15 3724934 3725061 -81970693 + L1MCa LINE L1 1918 2054 -4372 239 191 0 0 chr15 3725061 3725108 -81970646 + LTR66 LTR ERVL 393 439 -171 548 264 7 0 chr15 3725114 3725262 -81970492 + L1MCa LINE L1 2052 2200 -4226 834 265 118 29 chr15 3725268 3725581 -81970173 - MLT1E LTR MaLR -248 345 5 527 273 7 0 chr15 3725590 3725733 -81970021 - L1MD3 LINE L1 -283 7712 7569 1628 153 3 40 chr15 3725806 3726106 -81969648 + AluJb SINE Alu 1 289 -23 5236 243 57 58 chr15 3726176 3727815 -81967939 - L1MC3 LINE L1 0 7785 6146 1946 136 0 34 chr15 3727815 3728145 -81967609 - AluSx SINE Alu 0 320 1 5236 243 57 58 chr15 3728145 3728434 -81967320 - L1MC3 LINE L1 -1639 6146 5858 660 234 47 0 chr15 3728437 3728658 -81967096 - L1MC3 LINE L1 -720 5454 5225 2417 84 3 0 chr15 3728658 3728957 -81966797 - AluY SINE Alu -11 300 1 2516 67 13 0 chr15 3729244 3729544 -81966210 + AluY SINE Alu 2 305 -6 328 325 26 0 chr15 3729748 3729865 -81965889 + HsTC2 DNA Tc2 35 154 -1744 * 1008 233 89 28 chr15 3729863 3730300 -81965454 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3730371 3730479 -81965275 - MIR SINE MIR -31 231 119 723 200 23 0 chr15 3730853 3730983 -81964771 + AluJo SINE Alu 3 135 -177 2429 106 0 0 chr15 3730986 3731297 -81964457 + AluSx SINE Alu 1 311 -1 2260 110 3 0 chr15 3731553 3731852 -81963902 + AluSx SINE Alu 3 302 -10 1933 81 84 0 chr15 3732760 3732879 -81962875 + AluSx SINE Alu 1 109 -203 273 29 0 0 chr15 3732879 3732913 -81962841 + (CA)n Simple_repeat Simple_repeat 2 35 0 1933 81 84 0 chr15 3732913 3733066 -81962688 + AluSx SINE Alu 109 296 -16 39 22 0 0 chr15 3734223 3734269 -81961485 + AT_rich Low_complexity Low_complexity 1 46 0 2173 112 3 10 chr15 3734362 3734674 -81961080 + AluSx SINE Alu 1 310 -2 653 235 56 34 chr15 3734888 3735067 -81960687 + MER58A DNA MER1_type 16 198 -26 231 274 32 32 chr15 3735703 3735798 -81959956 - L1ME LINE L1 -5928 142 48 695 165 0 0 chr15 3735965 3736074 -81959680 - AluSg/x SINE Alu -21 291 183 682 140 0 0 chr15 3736076 3736176 -81959578 - AluJo/FLAM SINE Alu -199 113 14 2121 107 0 31 chr15 3736453 3736743 -81959011 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr15 3736743 3736775 -81958979 + (GA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 3737422 3737444 -81958310 + AT_rich Low_complexity Low_complexity 1 22 0 2064 124 18 72 chr15 3737628 3737699 -81958055 - MER47A DNA MER2_type -1957 366 293 2284 98 3 0 chr15 3737699 3737984 -81957770 + AluSg SINE Alu 1 286 -24 2064 124 18 72 chr15 3737984 3738299 -81957455 - MER47A DNA MER2_type -2030 293 1 1975 153 20 0 chr15 3738881 3739175 -81956579 + AluSx SINE Alu 1 300 -12 1622 148 0 104 chr15 3739180 3739517 -81956237 + AluJb SINE Alu 1 302 -10 231 250 172 39 chr15 3739815 3739969 -81955785 - L1MC/D LINE L1 -2004 5804 5615 3161 146 31 29 chr15 3739969 3740525 -81955229 - MER41D LTR ERV1 0 557 1 231 250 172 39 chr15 3740525 3740574 -81955180 - L1MC/D LINE L1 -2193 5615 5574 381 58 0 0 chr15 3740880 3740932 -81954822 + (TG)n Simple_repeat Simple_repeat 1 52 0 2676 155 19 25 chr15 3741194 3741678 -81954076 + MER31A LTR ERV1 5 485 0 2399 93 0 0 chr15 3742309 3742610 -81953144 - AluSx SINE Alu -11 301 1 431 78 62 0 chr15 3742688 3742752 -81953002 + Alu SINE Alu 5 72 -237 460 111 12 12 chr15 3743172 3743253 -81952501 + L1MB3 LINE L1 6100 6180 -3 2189 119 3 0 chr15 3743275 3743569 -81952185 - AluSg SINE Alu -15 295 1 2363 107 0 0 chr15 3744073 3744381 -81951373 - AluSx SINE Alu -4 308 1 2466 75 0 10 chr15 3744463 3744768 -81950986 - AluY SINE Alu -9 302 1 2343 104 7 0 chr15 3744931 3745230 -81950524 + AluSx SINE Alu 1 301 -11 1163 228 134 37 chr15 3745231 3745558 -81950196 + MER39 LTR ERV1 19 313 -394 2352 99 0 13 chr15 3745558 3745872 -81949882 + AluSg SINE Alu 1 310 0 1163 228 134 37 chr15 3745872 3746006 -81949748 + MER39 LTR ERV1 313 662 -45 1642 177 7 0 chr15 3746080 3746357 -81949397 - AluSx SINE Alu -16 296 18 3577 194 62 90 chr15 3746420 3746600 -81949154 - LTR49-int LTR ERV1 -3587 1349 1165 2247 113 0 0 chr15 3746600 3746900 -81948854 - AluSx SINE Alu -11 301 2 3577 194 62 90 chr15 3746900 3747661 -81948093 - LTR49-int LTR ERV1 -3771 1165 440 1816 113 4 4 chr15 3747661 3747928 -81947826 + AluSx SINE Alu 44 310 0 3577 194 62 90 chr15 3747928 3748073 -81947681 - LTR49-int LTR ERV1 -4496 440 292 2329 109 3 0 chr15 3748090 3748420 -81947334 + AluSx SINE Alu 1 312 0 355 228 51 112 chr15 3748427 3748498 -81947256 - LTR49-int LTR ERV1 -4661 1670 1596 1934 143 0 3 chr15 3748498 3748784 -81946970 + AluJo SINE Alu 1 285 -27 355 228 51 112 chr15 3748784 3748909 -81946845 - LTR49-int LTR ERV1 -4735 1596 1486 317 226 59 39 chr15 3748910 3749012 -81946742 + U13 snRNA snRNA 1 104 0 208 217 14 58 chr15 3749016 3749085 -81946669 + A-rich Low_complexity Low_complexity 5 70 0 392 182 74 74 chr15 3749086 3749207 -81946547 - LTR49-int LTR ERV1 -4836 1495 1375 2541 59 0 3 chr15 3749378 3749682 -81946072 - AluY SINE Alu -8 303 1 848 231 68 57 chr15 3750025 3750438 -81945316 - MER39 LTR ERV1 -27 650 269 385 283 0 0 chr15 3750422 3750528 -81945226 - MER34 LTR ERV1 -428 114 9 * 276 53 0 0 chr15 3750556 3750594 -81945160 + (CA)n Simple_repeat Simple_repeat 2 39 0 927 230 67 60 chr15 3751420 3751636 -81944118 + MLT1E1 LTR MaLR 54 267 -326 1866 79 0 17 chr15 3751636 3751876 -81943878 + AluY SINE Alu 55 290 -21 927 230 67 60 chr15 3751876 3752029 -81943725 + MLT1E1 LTR MaLR 267 417 -176 1727 190 7 3 chr15 3752029 3752329 -81943425 + AluJb SINE Alu 7 307 -5 927 230 67 60 chr15 3752329 3752458 -81943296 + MLT1E1 LTR MaLR 417 544 -49 1622 191 11 4 chr15 3752458 3752735 -81943019 + AluJo SINE Alu 1 279 -33 2210 137 34 0 chr15 3752735 3753086 -81942668 + THE1B LTR MaLR 2 364 0 927 230 67 60 chr15 3753086 3753120 -81942634 + MLT1E1 LTR MaLR 543 585 -8 215 59 0 29 chr15 3753317 3753351 -81942403 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2282 86 3 0 chr15 3753461 3753751 -81942003 + AluSc SINE Alu 1 291 -18 2039 93 117 11 chr15 3753899 3754345 -81941409 - LTR14B LTR ERVK 0 608 1 865 264 117 39 chr15 3754465 3754901 -81940853 + LTR41 LTR ERVL 1 470 -303 233 227 0 53 chr15 3754958 3755033 -81940721 + LTR41 LTR ERVL 693 763 -10 282 261 67 52 chr15 3755352 3755486 -81940268 + ERVL LTR ERVL 351 486 -5278 1481 176 14 21 chr15 3755978 3756267 -81939487 + AluJb SINE Alu 12 298 -14 318 177 0 0 chr15 3756271 3756333 -81939421 - L1 LINE L1 -1676 4470 4409 334 232 21 21 chr15 3756466 3756561 -81939193 + ERVL LTR ERVL 1548 1642 -3843 895 260 92 0 chr15 3756632 3756859 -81938895 + MER82 DNA MER2_type 405 652 -1 4983 73 52 9 chr15 3757637 3758297 -81937457 - LTR12 LTR ERV1 0 688 1 198 0 0 0 chr15 3758574 3758596 -81937158 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1748 159 3 20 chr15 3758905 3759206 -81936548 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr15 3759272 3759293 -81936461 + AT_rich Low_complexity Low_complexity 1 21 0 2325 112 0 0 chr15 3759526 3759838 -81935916 + AluSx SINE Alu 1 312 0 1881 100 126 0 chr15 3759848 3760119 -81935635 + AluSx SINE Alu 1 305 -7 1228 127 0 0 chr15 3760119 3760285 -81935469 + AluSg/x SINE Alu 134 299 -13 2120 98 0 4 chr15 3760417 3760692 -81935062 + AluSx SINE Alu 30 303 -9 1172 282 59 16 chr15 3760797 3761513 -81934241 - L1MEc LINE L1 -4837 1276 673 5638 117 6 12 chr15 3761514 3762372 -81933382 + L1PA13 LINE L1 5307 6159 -4 544 228 0 8 chr15 3762620 3762747 -81933007 + AluY SINE Alu 180 305 -6 328 325 26 0 chr15 3762952 3763069 -81932685 + HsTC2 DNA Tc2 35 154 -1744 * 962 238 97 25 chr15 3763067 3763500 -81932254 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3763571 3763679 -81932075 - MIR SINE MIR -31 231 119 756 166 30 4 chr15 3764257 3764421 -81931333 - MSTA LTR MaLR -208 167 1 2076 130 7 0 chr15 3764521 3764821 -81930933 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 3764899 3764929 -81930825 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 837 181 87 0 chr15 3764936 3765085 -81930669 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 3765085 3765108 -81930646 + AT_rich Low_complexity Low_complexity 1 23 0 2585 172 59 12 chr15 3765170 3765676 -81930078 - L1MB3 LINE L1 -2 6181 5652 453 206 18 100 chr15 3765676 3765846 -81929908 - AluSg/x SINE Alu -19 290 135 495 175 0 0 chr15 3766257 3766377 -81929377 + G-rich Low_complexity Low_complexity 1 120 0 1209 228 54 33 chr15 3766532 3766631 -81929123 + MER58B DNA MER1_type 1 96 -2324 2375 97 3 0 chr15 3766631 3766931 -81928823 + AluSx SINE Alu 1 301 -11 1209 228 54 33 chr15 3766931 3767165 -81928589 + MER58B DNA MER1_type 96 341 0 1706 174 14 3 chr15 3767188 3767470 -81928284 - AluSx SINE Alu -27 285 1 1898 146 3 3 chr15 3767604 3767898 -81927856 + AluSx SINE Alu 2 295 -17 2235 102 10 3 chr15 3768450 3768743 -81927011 + AluSg SINE Alu 1 295 -15 1200 143 104 17 chr15 3769098 3769328 -81926426 - MSTA LTR MaLR 0 428 179 2183 127 3 0 chr15 3769460 3769760 -81925994 + AluSq SINE Alu 1 301 -12 1665 197 14 57 chr15 3769806 3769876 -81925878 + MER67A LTR ERV1 1 72 -471 2209 110 3 0 chr15 3769876 3770175 -81925579 + AluSq SINE Alu 2 301 -12 1665 197 14 57 chr15 3770175 3770526 -81925228 + MER67A LTR ERV1 72 404 -139 1803 149 6 19 chr15 3770544 3770860 -81924894 - AluSx SINE Alu 0 312 1 453 158 13 0 chr15 3770862 3770938 -81924816 - FLAM_A SINE Alu -34 108 32 868 182 7 7 chr15 3770965 3771119 -81924635 + MER67A LTR ERV1 390 543 0 1584 119 61 61 chr15 3771350 3771496 -81924258 - AluJb SINE Alu -17 295 147 2158 102 3 33 chr15 3771496 3771801 -81923953 - AluSg SINE Alu -12 298 3 1584 119 61 61 chr15 3771801 3771931 -81923823 - AluJb SINE Alu -164 148 19 24 41 0 20 chr15 3772213 3772250 -81923504 + AT_rich Low_complexity Low_complexity 1 38 -10 1476 117 167 8 chr15 3772250 3772507 -81923247 - AluSc SINE Alu -1 298 1 24 41 0 20 chr15 3772507 3772518 -81923236 + AT_rich Low_complexity Low_complexity 38 48 0 831 244 151 26 chr15 3773109 3773454 -81922300 + L1MC4 LINE L1 6493 6880 -1162 1360 196 109 7 chr15 3773502 3773778 -81921976 + AluJo SINE Alu 1 304 -8 358 175 0 0 chr15 3773778 3773835 -81921919 + L1MA5A LINE L1 6043 6099 -198 3323 137 61 4 chr15 3773870 3774425 -81921329 - L1MA5 LINE L1 -319 5981 5395 437 312 12 0 chr15 3774475 3774645 -81921109 + L1MC4 LINE L1 7454 7625 -417 231 36 0 0 chr15 3774954 3774982 -81920772 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 312 27 0 0 chr15 3774981 3775018 -81920736 + (GA)n Simple_repeat Simple_repeat 2 38 0 784 197 98 38 chr15 3775018 3775201 -81920553 - AluJo SINE Alu -34 278 85 1101 181 236 57 chr15 3775323 3775510 -81920244 + LTR48 LTR ERV1 1 153 -634 2255 106 3 3 chr15 3775510 3775812 -81919942 + AluSg SINE Alu 1 302 -8 1101 181 236 57 chr15 3775812 3776027 -81919727 + LTR48 LTR ERV1 153 475 -312 924 239 63 28 chr15 3776027 3776282 -81919472 + LTR48B LTR ERV1 381 644 0 183 309 147 0 chr15 3776334 3776402 -81919352 - L2 LINE L2 -44 3269 3192 2480 85 0 0 chr15 3776601 3776908 -81918846 - AluSg SINE Alu -3 307 1 1590 242 57 11 chr15 3776908 3777362 -81918392 - L1MC3 LINE L1 -426 7359 6885 643 193 39 8 chr15 3777367 3777514 -81918240 - MSTC LTR MaLR -244 152 1 427 253 0 108 chr15 3777864 3777939 -81917815 + MER54A LTR ERVL 1 83 -818 1961 128 20 14 chr15 3777939 3778235 -81917519 + AluSx SINE Alu 1 298 -14 427 253 0 108 chr15 3778235 3778353 -81917401 + MER54A LTR ERVL 83 173 -728 215 228 18 0 chr15 3778503 3778560 -81917194 - MIR SINE MIR -64 198 141 2229 121 0 7 chr15 3778723 3779030 -81916724 + AluSx SINE Alu 1 305 -7 363 260 160 35 chr15 3779086 3779317 -81916437 - L1M4 LINE L1 -1125 5021 4762 23 33 0 0 chr15 3779887 3779917 -81915837 + AT_rich Low_complexity Low_complexity 1 30 0 483 163 39 28 chr15 3779994 3780172 -81915582 + (TA)n Simple_repeat Simple_repeat 1 180 0 2528 34 7 10 chr15 3780253 3780550 -81915204 + AluY SINE Alu 2 297 -14 2291 116 160 2 chr15 3780550 3780956 -81914798 - MER31A LTR ERV1 -15 470 1 570 195 122 12 chr15 3781484 3781648 -81914106 - MER5A DNA MER1_type 0 189 8 2189 102 0 41 chr15 3783019 3783334 -81912420 + AluSq SINE Alu 1 302 -11 213 281 49 12 chr15 3783339 3783421 -81912333 - MIR SINE MIR -146 116 32 2208 124 0 13 chr15 3783993 3784308 -81911446 - AluSx SINE Alu -1 311 1 326 369 0 0 chr15 3784312 3784461 -81911293 - L1ME LINE L1 -402 5768 5620 1034 268 119 28 chr15 3784467 3784937 -81910817 + L1ME3A LINE L1 5528 6040 -130 321 26 0 0 chr15 3784979 3785017 -81910737 + (TG)n Simple_repeat Simple_repeat 2 39 0 420 52 0 0 chr15 3785026 3785084 -81910670 - Alu SINE Alu -5 307 250 377 190 53 0 chr15 3785085 3785173 -81910581 - AluSq/x SINE Alu -160 143 65 502 278 87 80 chr15 3785173 3785687 -81910067 - LTR48B LTR ERV1 0 633 20 1074 175 10 35 chr15 3785688 3785888 -81909866 - AluJb SINE Alu -115 197 3 812 143 32 0 chr15 3786433 3786559 -81909195 + FLAM_C SINE Alu 1 130 -3 1129 185 138 31 chr15 3786725 3786847 -81908907 - AluJo SINE Alu -31 281 173 2283 69 24 0 chr15 3786847 3787135 -81908619 - AluY SINE Alu -16 295 1 1129 185 138 31 chr15 3787135 3787266 -81908488 - AluJo SINE Alu -139 173 1 33 43 0 0 chr15 3787353 3787400 -81908354 + AT_rich Low_complexity Low_complexity 1 47 0 397 248 64 40 chr15 3787468 3787593 -81908161 - MER94 DNA DNA -5 129 2 273 183 139 52 chr15 3787775 3787827 -81907927 - L1MC4 LINE L1 0 8042 7996 1700 166 0 45 chr15 3787827 3788135 -81907619 + AluJo SINE Alu 4 297 -15 273 183 139 52 chr15 3788135 3788197 -81907557 - L1MC4 LINE L1 -46 7996 7918 1718 201 0 3 chr15 3788225 3788523 -81907231 - AluJo SINE Alu -15 297 1 345 24 0 0 chr15 3788578 3788620 -81907134 + (T)n Simple_repeat Simple_repeat 1 42 0 898 106 0 15 chr15 3788756 3788888 -81906866 + AluSg/x SINE Alu 176 305 -7 2241 108 0 0 chr15 3788979 3789276 -81906478 + AluSg SINE Alu 1 297 -13 1202 184 43 71 chr15 3789282 3789608 -81906146 - LTR48B-int LTR ERV1 -55 4881 4565 329 253 0 0 chr15 3789582 3789661 -81906093 - LTR48B-int LTR ERV1 -941 3930 3852 * 1261 223 129 42 chr15 3789689 3789865 -81905889 - MER39 LTR ERV1 0 707 548 1747 160 3 31 chr15 3789865 3790183 -81905571 - AluJb SINE Alu -3 309 1 1261 223 129 42 chr15 3790183 3790392 -81905362 - MER39 LTR ERV1 -159 548 288 507 192 123 68 chr15 3790574 3790793 -81904961 - MER31-int LTR ERV1 -4160 776 546 * 680 228 98 23 chr15 3790786 3791001 -81904753 - MER31-int LTR ERV1 -4505 431 201 2461 67 3 3 chr15 3791066 3791363 -81904391 + AluY SINE Alu 1 297 -14 733 111 0 0 chr15 3791395 3791494 -81904260 - AluJ/FLAM SINE Alu -212 100 2 2215 112 0 0 chr15 3791522 3791808 -81903946 + AluSg SINE Alu 1 286 -24 546 197 21 42 chr15 3791856 3791998 -81903756 + MLT1A1 LTR MaLR 227 365 0 1987 153 38 3 chr15 3791998 3792339 -81903415 + MLT1A1-int LTR MaLR 1 353 -1382 770 203 38 55 chr15 3792363 3792600 -81903154 - PABL_B LTR ERV1 -66 601 369 314 319 64 29 chr15 3793688 3793892 -81901862 - PABL_B LTR ERV1 -456 211 1 988 197 53 5 chr15 3793892 3794080 -81901674 + MLT-int LTR MaLR 348 544 -1191 896 157 54 0 chr15 3794083 3794230 -81901524 + FRAM SINE Alu 1 155 -11 2207 91 0 11 chr15 3794235 3794539 -81901215 - AluSg SINE Alu 0 301 1 4792 215 24 76 chr15 3794908 3795903 -81899851 + MLT1A1-int LTR MaLR 512 1428 -307 639 186 59 0 chr15 3795903 3796021 -81899733 - FLAM_A SINE Alu -8 125 1 4792 215 24 76 chr15 3796021 3796295 -81899459 + MLT1A1-int LTR MaLR 1428 1715 -20 828 232 22 130 chr15 3796318 3796685 -81899069 + MLT1A1 LTR MaLR 1 321 -44 2161 123 3 0 chr15 3796685 3796985 -81898769 - AluSx SINE Alu -11 301 1 828 232 22 130 chr15 3796985 3797026 -81898728 + MLT1A1 LTR MaLR 321 365 0 2092 122 0 17 chr15 3797106 3797432 -81898322 + AluSx SINE Alu 1 312 0 2965 159 32 32 chr15 3797435 3798000 -81897754 - MER34B LTR ERV1 0 565 1 366 241 71 27 chr15 3798000 3798112 -81897642 - MER31A-int LTR ERV1 -4648 288 172 741 124 20 92 chr15 3798159 3798312 -81897442 + FLAM_C SINE Alu 2 143 0 514 274 20 26 chr15 3798316 3798469 -81897285 - MER31A-int LTR ERV1 -4770 166 15 2452 141 43 56 chr15 3798491 3798857 -81896897 - MER31A LTR ERV1 -7 478 118 2285 96 0 7 chr15 3798857 3799170 -81896584 - AluSg SINE Alu 0 310 1 2452 141 43 56 chr15 3799170 3799287 -81896467 - MER31A LTR ERV1 -367 118 1 2215 93 38 3 chr15 3799713 3800004 -81895750 - AluSg SINE Alu -9 301 1 255 161 0 0 chr15 3800086 3800142 -81895612 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 800 191 13 7 chr15 3800171 3800323 -81895431 + AluJb SINE Alu 156 308 -4 663 125 22 125 chr15 3800483 3800619 -81895135 - LTR12 LTR ERV1 -234 480 359 245 280 13 0 chr15 3800620 3800695 -81895059 - LTR30 LTR ERV1 -99 623 548 1570 118 122 4 chr15 3800698 3800953 -81894801 - LTR12 LTR ERV1 -429 285 1 1004 183 17 74 chr15 3803014 3803095 -81892659 - AluSx SINE Alu -95 217 133 2240 84 3 7 chr15 3803095 3803407 -81892347 - AluSx SINE Alu 0 311 1 1004 183 17 74 chr15 3803407 3803554 -81892200 - AluSx SINE Alu -179 133 1 1931 226 52 21 chr15 3803560 3804083 -81891671 - MER74B LTR ERVL -82 540 2 2399 170 38 57 chr15 3804086 3804398 -81891356 - L1M3 LINE L1 -560 5623 5307 192 97 0 0 chr15 3804398 3804429 -81891325 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1960 147 7 0 chr15 3804429 3804710 -81891044 - AluSx SINE Alu -29 283 1 2399 170 38 57 chr15 3804710 3804761 -81890993 - L1M3 LINE L1 -875 5308 5258 2027 166 0 0 chr15 3804761 3805068 -81890686 - AluSx SINE Alu -5 307 1 2399 170 38 57 chr15 3805068 3805541 -81890213 - L1M3 LINE L1 -925 5258 4793 240 59 0 0 chr15 3805727 3805761 -81889993 + (TG)n Simple_repeat Simple_repeat 1 34 0 867 196 6 30 chr15 3805783 3805951 -81889803 - MLT2D LTR ERVL -54 360 197 2163 123 20 0 chr15 3805952 3806254 -81889500 - AluSx SINE Alu -4 308 1 12638 184 39 20 chr15 3806255 3806736 -81889018 - ERVL LTR ERVL -303 5461 4991 2167 113 0 3 chr15 3806736 3807055 -81888699 - AluSg SINE Alu 0 310 1 12638 184 39 20 chr15 3807055 3808788 -81886966 - ERVL LTR ERVL -773 4991 3198 2195 135 0 6 chr15 3808788 3809099 -81886655 - AluSx SINE Alu -3 309 1 12638 184 39 20 chr15 3809099 3809224 -81886530 - ERVL LTR ERVL -2566 3198 3077 544 258 67 16 chr15 3809208 3809402 -81886352 - ERVL LTR ERVL -5345 419 216 * 848 107 90 0 chr15 3809404 3809526 -81886228 + AluSq/x SINE Alu 1 133 -180 272 264 86 71 chr15 3809537 3809677 -81886077 - ERVL LTR ERVL -5621 143 2 1912 179 42 32 chr15 3809685 3810088 -81885666 - MLT2D LTR ERVL -7 407 1 940 203 81 0 chr15 3810088 3810285 -81885469 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 3810321 3810345 -81885409 + (A)n Simple_repeat Simple_repeat 1 24 0 876 184 0 7 chr15 3810390 3810542 -81885212 + FAM SINE Alu 20 170 -15 434 270 20 7 chr15 3811087 3811239 -81884515 + MIR SINE MIR 2 155 -107 1046 175 0 0 chr15 3811240 3811406 -81884348 + AluJb SINE Alu 137 302 -10 1618 199 3 27 chr15 3811434 3811735 -81884019 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 3811754 3811793 -81883961 + AT_rich Low_complexity Low_complexity 1 39 0 200 235 59 0 chr15 3811823 3811874 -81883880 + MIR SINE MIR 184 237 -25 2285 114 3 0 chr15 3812328 3812634 -81883120 + AluSg SINE Alu 1 307 -3 696 35 0 0 chr15 3812926 3813012 -81882742 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 3813079 3813102 -81882652 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2188 101 0 11 chr15 3813105 3813391 -81882363 - AluSc SINE Alu -26 283 1 1450 183 101 6 chr15 3813391 3813729 -81882025 - L1MC3 LINE L1 -23 7762 7393 * 3294 166 50 100 chr15 3813726 3813991 -81881763 - L1MB7 LINE L1 0 6184 5907 2470 100 0 0 chr15 3813991 3814302 -81881452 - AluSx SINE Alu -1 311 1 3294 166 50 100 chr15 3814302 3814349 -81881405 - L1MB7 LINE L1 -277 5907 5859 1723 189 0 3 chr15 3814349 3814650 -81881104 + AluJo SINE Alu 2 301 -11 3294 166 50 100 chr15 3814650 3814796 -81880958 - L1MB7 LINE L1 -325 5859 5707 1524 199 46 26 chr15 3814796 3815102 -81880652 - AluJo SINE Alu 0 312 1 3294 166 50 100 chr15 3815102 3815162 -81880592 - L1MB7 LINE L1 -477 5707 5646 2278 95 0 0 chr15 3815162 3815447 -81880307 - AluSg SINE Alu -17 293 9 3294 166 50 100 chr15 3815447 3815521 -81880233 - L1MB7 LINE L1 -538 5646 5570 1756 163 16 10 chr15 3815521 3815828 -81879926 - AluJo SINE Alu -3 309 1 1889 130 13 23 chr15 3815834 3816142 -81879612 - AluSx SINE Alu -7 305 1 3294 166 50 100 chr15 3816142 3816493 -81879261 - L1MB7 LINE L1 -619 5565 5297 2055 146 7 0 chr15 3816493 3816787 -81878967 - AluSx SINE Alu -16 296 1 3294 166 50 100 chr15 3816787 3817016 -81878738 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 3817016 3817163 -81878591 + (TA)n Simple_repeat Simple_repeat 2 151 0 270 133 0 0 chr15 3817191 3817236 -81878518 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 3817701 3817737 -81878017 + AT_rich Low_complexity Low_complexity 1 36 0 302 254 97 6 chr15 3817775 3817940 -81877814 + L1MC3 LINE L1 7444 7623 -162 409 276 91 25 chr15 3818007 3818250 -81877504 - MIR SINE MIR -2 260 2 2250 110 3 0 chr15 3818301 3818600 -81877154 - AluSc SINE Alu -9 300 1 320 187 13 27 chr15 3818673 3818748 -81877006 - MER116 DNA Mariner -6 74 1 564 263 10 57 chr15 3822415 3822609 -81873145 + MIR3 SINE MIR 15 199 -9 521 249 171 63 chr15 3823745 3824206 -81871548 + MLT2B1 LTR ERVL 2 512 -8 371 123 99 12 chr15 3824418 3824499 -81871255 - MER20B DNA MER1_type -71 712 625 2583 170 236 15 chr15 3824607 3825320 -81870434 + MER52C LTR ERV1 409 1278 0 1198 204 41 44 chr15 3825498 3825885 -81869869 + L1MC/D LINE L1 5288 5680 -688 210 256 26 64 chr15 3826318 3826396 -81869358 - MER5A DNA MER1_type -6 183 109 1787 129 48 3 chr15 3826920 3827230 -81868524 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr15 3827234 3827266 -81868488 + (T)n Simple_repeat Simple_repeat 1 32 0 5265 48 5 1 chr15 3828780 3829433 -81866321 + L1PA5 LINE L1 5500 6154 0 193 322 44 0 chr15 3829685 3829775 -81865979 - L2 LINE L2 -4 3309 3216 345 285 64 121 chr15 3830132 3830381 -81865373 - L2 LINE L2 -6 3266 3032 287 281 0 0 chr15 3830398 3830462 -81865292 + L2 LINE L2 3201 3264 -8 25 0 0 0 chr15 3830577 3830602 -81865152 + AT_rich Low_complexity Low_complexity 1 25 0 1192 165 89 8 chr15 3831051 3831287 -81864467 - AluJb SINE Alu -18 294 40 668 201 63 0 chr15 3831305 3831479 -81864275 - L1M4 LINE L1 -733 5441 5257 318 258 11 84 chr15 3831495 3831673 -81864081 - L1MA10 LINE L1 -13 6321 6157 323 254 127 5 chr15 3831679 3831876 -81863878 - L1M4 LINE L1 -870 5276 5056 1720 176 28 3 chr15 3832772 3833062 -81862692 - AluJo SINE Alu -15 297 1 21 36 0 0 chr15 3833139 3833167 -81862587 + AT_rich Low_complexity Low_complexity 1 28 0 2311 113 0 0 chr15 3833183 3833484 -81862270 - AluSg SINE Alu -9 301 1 258 268 113 12 chr15 3833515 3833683 -81862071 + L1MC/D LINE L1 5706 5890 -1918 21 36 0 0 chr15 3833884 3833912 -81861842 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr15 3836012 3836097 -81859657 + AT_rich Low_complexity Low_complexity 1 85 0 1230 113 0 0 chr15 3836608 3836768 -81858986 - AluSx SINE Alu -150 162 3 765 143 54 0 chr15 3836917 3837064 -81858690 + L1MB7 LINE L1 5696 5850 -334 622 160 84 25 chr15 3837288 3837407 -81858347 - FLAM_C SINE Alu -6 127 2 1535 193 10 3 chr15 3837735 3838030 -81857724 + AluJo SINE Alu 1 297 -15 446 141 0 81 chr15 3838148 3838247 -81857507 + FLAM_A SINE Alu 40 130 -12 2070 116 0 7 chr15 3839708 3839993 -81855761 - AluSx SINE Alu -29 283 1 691 208 104 22 chr15 3840003 3840186 -81855568 + Tigger3(Golem) DNA MER2_type 2811 3008 -21 2192 91 0 39 chr15 3840197 3840504 -81855250 - AluSq SINE Alu -18 295 1 734 102 68 0 chr15 3841422 3841540 -81854214 - AluSx SINE Alu -9 301 176 847 117 0 39 chr15 3841540 3841668 -81854086 - AluSx SINE Alu -189 123 1 405 248 44 9 chr15 3841902 3842015 -81853739 + MER106A DNA MER1_type 1 117 -119 1992 115 17 3 chr15 3844162 3844450 -81851304 + AluSq SINE Alu 1 292 -21 1860 122 83 17 chr15 3845538 3845826 -81849928 - AluSp SINE Alu -6 307 1 2062 130 10 0 chr15 3846486 3846786 -81848968 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 3846794 3846815 -81848939 + AT_rich Low_complexity Low_complexity 1 21 0 594 280 115 85 chr15 3847285 3847956 -81847798 - MER21B LTR ERV1 -149 714 24 2239 100 0 7 chr15 3848590 3848889 -81846865 + AluSx SINE Alu 3 299 -13 1118 165 0 0 chr15 3848889 3849059 -81846695 + AluSg/x SINE Alu 134 303 -9 26 0 0 0 chr15 3849550 3849576 -81846178 + AT_rich Low_complexity Low_complexity 1 26 0 2165 116 3 0 chr15 3850365 3850659 -81845095 - AluSq SINE Alu -18 295 1 586 259 27 22 chr15 3851043 3851228 -81844526 + MER58A DNA MER1_type 33 218 -6 1989 131 3 3 chr15 3851528 3851819 -81843935 + AluSx SINE Alu 1 291 -21 36 23 0 0 chr15 3852753 3852796 -81842958 + AT_rich Low_complexity Low_complexity 1 43 0 654 69 129 0 chr15 3852866 3852967 -81842787 - MER85 DNA T2_type -25 114 1 444 275 10 28 chr15 3852967 3853154 -81842600 - L1MB7 LINE L1 -3 6181 5994 2211 117 0 0 chr15 3853205 3853503 -81842251 + AluSx SINE Alu 1 298 -14 2493 68 13 0 chr15 3855368 3855675 -81840079 + AluY SINE Alu 1 311 0 2115 117 0 0 chr15 3856228 3856530 -81839224 - AluSx SINE Alu 0 302 1 248 283 22 33 chr15 3857458 3857550 -81838204 + L2 LINE L2 3221 3311 -2 1349 186 67 22 chr15 3857575 3857844 -81837910 - AluJo SINE Alu -29 283 3 1858 108 0 34 chr15 3858091 3858388 -81837366 + AluSx SINE Alu 19 305 -7 2058 142 14 0 chr15 3858476 3858772 -81836982 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr15 3859744 3859767 -81835987 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 332 26 0 0 chr15 3859766 3859804 -81835950 + (TG)n Simple_repeat Simple_repeat 1 38 0 1318 153 61 4 chr15 3860342 3860570 -81835184 - AluSg SINE Alu -69 241 1 315 161 0 0 chr15 3861799 3861855 -81833899 + (TG)n Simple_repeat Simple_repeat 2 57 0 548 263 111 12 chr15 3862434 3862605 -81833149 - MER5A DNA MER1_type 0 189 2 22 56 0 0 chr15 3862856 3862892 -81832862 + AT_rich Low_complexity Low_complexity 1 36 0 212 402 0 0 chr15 3863977 3864059 -81831695 + L2 LINE L2 3214 3295 -18 201 240 0 0 chr15 3867912 3867987 -81827767 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr15 3868444 3868472 -81827282 + AT_rich Low_complexity Low_complexity 1 28 0 469 283 40 35 chr15 3869330 3869528 -81826226 - MER8 DNA MER2_type -40 199 1 25 31 0 0 chr15 3869911 3869943 -81825811 + AT_rich Low_complexity Low_complexity 1 32 0 2286 86 0 0 chr15 3869994 3870285 -81825469 + AluSg SINE Alu 1 291 -19 228 151 38 0 chr15 3870895 3870948 -81824806 - MER109 Unknown Unknown -1442 990 936 2283 88 0 16 chr15 3871953 3872258 -81823496 + AluSq SINE Alu 1 300 -13 3784 97 122 5 chr15 3874195 3874785 -81820969 - PABL_A LTR ERV1 -1 659 1 295 231 115 0 chr15 3875459 3875537 -81820217 - MLT1G LTR MaLR -7 583 497 2021 106 46 13 chr15 3875824 3876127 -81819627 + AluSq SINE Alu 1 313 0 325 275 90 47 chr15 3877652 3877863 -81817891 - L1M4 LINE L1 -1426 4720 4501 2247 256 57 31 chr15 3878607 3879221 -81816533 - L1 LINE L1 -1278 4868 4222 1645 143 94 0 chr15 3879221 3879487 -81816267 - AluSq SINE Alu -22 291 1 2247 256 57 31 chr15 3879487 3879764 -81815990 - L1 LINE L1 -1924 4222 3954 799 266 186 20 chr15 3879765 3879914 -81815840 - L1 LINE L1 -2449 3697 3574 2416 70 0 3 chr15 3879914 3880216 -81815538 - AluY SINE Alu -10 301 1 799 266 186 20 chr15 3880216 3881008 -81814746 - L1 LINE L1 -2572 3574 2600 1720 117 0 0 chr15 3881032 3881262 -81814492 - AluSg SINE Alu -29 281 52 1080 173 42 35 chr15 3881368 3881628 -81814126 + AluSx SINE Alu 51 312 0 1848 100 126 0 chr15 3881638 3881909 -81813845 + AluSx SINE Alu 1 305 -7 1234 121 0 0 chr15 3881909 3882075 -81813679 + AluSg/x SINE Alu 134 299 -13 2195 106 0 0 chr15 3882175 3882468 -81813286 + AluSg SINE Alu 3 295 -15 1195 188 50 67 chr15 3882468 3882800 -81812954 - PABL_B-int LTR ERV1 -44 4892 4565 322 253 0 0 chr15 3882774 3882853 -81812901 - PABL_B-int LTR ERV1 -941 3930 3852 * 1215 228 148 40 chr15 3882881 3883057 -81812697 - MER39 LTR ERV1 0 707 552 1729 160 3 31 chr15 3883057 3883375 -81812379 - AluJb SINE Alu -3 309 1 1215 228 148 40 chr15 3883375 3883602 -81812152 - MER39 LTR ERV1 -155 552 260 529 188 127 66 chr15 3883766 3883979 -81811775 - PABL_B-int LTR ERV1 -4160 776 551 * 679 228 98 23 chr15 3883978 3884193 -81811561 - PABL_B-int LTR ERV1 -4505 431 201 2505 60 0 3 chr15 3884258 3884556 -81811198 + AluY SINE Alu 1 297 -14 720 110 0 0 chr15 3884588 3884688 -81811066 - AluJ/FLAM SINE Alu -212 100 1 2347 110 0 0 chr15 3884715 3885025 -81810729 + AluSg SINE Alu 1 310 0 540 197 21 42 chr15 3885050 3885192 -81810562 + MLT1A1 LTR MaLR 227 365 0 1941 153 38 3 chr15 3885192 3885533 -81810221 + MLT1A1-int LTR MaLR 1 353 -1382 727 207 38 55 chr15 3885552 3885789 -81809965 - PABL_B LTR ERV1 -66 601 369 307 319 64 29 chr15 3886880 3887084 -81808670 - PABL_B LTR ERV1 -456 211 1 960 198 53 5 chr15 3887084 3887271 -81808483 + MLT-int LTR MaLR 348 543 -1192 961 146 53 0 chr15 3887271 3887422 -81808332 + FRAM SINE Alu 1 155 -21 2184 88 0 11 chr15 3887427 3887731 -81808023 - AluSg SINE Alu 0 301 1 4708 216 20 76 chr15 3888116 3889095 -81806659 + MLT1A1-int LTR MaLR 532 1427 -308 627 186 59 0 chr15 3889095 3889213 -81806541 - FLAM_A SINE Alu -8 125 1 4708 216 20 76 chr15 3889213 3889487 -81806267 + MLT1A1-int LTR MaLR 1427 1715 -20 856 247 20 112 chr15 3889510 3889877 -81805877 + MLT1A1 LTR MaLR 1 424 -33 1301 107 0 0 chr15 3889877 3890045 -81805709 - AluSg/x SINE Alu -11 301 134 363 65 0 0 chr15 3890046 3890092 -81805662 - Alu SINE Alu -257 46 1 484 265 76 0 chr15 3890113 3890336 -81805418 - L1M4 LINE L1 -3563 2819 2580 3686 198 75 44 chr15 3890347 3890446 -81805308 - L1M4 LINE L1 -4272 2112 2018 2310 74 0 3 chr15 3890446 3890731 -81805023 - AluY SINE Alu -27 284 1 3686 198 75 44 chr15 3890731 3890888 -81804866 - L1M4 LINE L1 -4366 2018 1867 1463 205 0 33 chr15 3890888 3891191 -81804563 + AluJo SINE Alu 1 293 -19 3686 198 75 44 chr15 3891191 3892090 -81803664 - L1M4 LINE L1 -4517 1867 920 1053 234 75 67 chr15 3892091 3892479 -81803275 - L1M4 LINE L1 -5980 404 14 1290 216 40 7 chr15 3892483 3892784 -81802970 - AluJo SINE Alu -1 311 1 940 253 129 3 chr15 3892863 3893234 -81802520 - L1MB4 LINE L1 -1 6179 5762 347 234 54 18 chr15 3893403 3893514 -81802240 - L1MB4 LINE L1 -479 5701 5587 977 242 104 4 chr15 3893794 3894063 -81801691 + AluJo SINE Alu 1 296 -6 21 57 0 0 chr15 3895164 3895199 -81800555 + AT_rich Low_complexity Low_complexity 1 35 0 270 227 93 0 chr15 3895518 3895615 -81800139 - L1MC5 LINE L1 -886 7075 6970 1711 163 10 24 chr15 3895854 3896149 -81799605 - AluSx SINE Alu -19 293 3 22 0 0 54 chr15 3896156 3896174 -81799580 + AT_rich Low_complexity Low_complexity 1 18 -17 2094 132 6 0 chr15 3896174 3896485 -81799269 - AluSp SINE Alu 0 313 1 22 0 0 54 chr15 3896485 3896503 -81799251 + AT_rich Low_complexity Low_complexity 18 35 0 1814 161 0 7 chr15 3896543 3896828 -81798926 - AluSx SINE Alu -19 293 11 746 112 19 0 chr15 3897287 3897394 -81798360 + BC200 scRNA scRNA 12 120 -80 491 300 29 40 chr15 3898571 3898844 -81796910 + L1MC/D LINE L1 5335 5604 -2204 2066 147 0 3 chr15 3899390 3899697 -81796057 + AluSx SINE Alu 1 306 -6 1957 128 7 0 chr15 3900869 3901143 -81794611 + AluSg SINE Alu 12 287 -23 768 247 12 18 chr15 3905725 3905895 -81789859 - MER58A DNA MER1_type -55 169 1 294 238 112 93 chr15 3906544 3906715 -81789039 - L1MC/D LINE L1 -2154 5654 5477 2249 95 10 3 chr15 3906715 3907009 -81788745 + AluSx SINE Alu 1 296 -16 294 238 112 93 chr15 3907009 3907051 -81788703 - L1MC/D LINE L1 -2331 5477 5437 1296 279 109 42 chr15 3907262 3908145 -81787609 - L1MD3 LINE L1 -6 8036 7103 390 356 169 12 chr15 3910524 3911010 -81784744 - L2 LINE L2 -746 2568 2007 2408 91 0 0 chr15 3911701 3911998 -81783756 + AluSq SINE Alu 1 297 -16 585 262 122 67 chr15 3914560 3915274 -81780480 - L1MDa LINE L1 -4471 1609 857 1340 173 39 27 chr15 3915276 3915536 -81780218 - AluJo SINE Alu -7 305 43 383 254 123 9 chr15 3915582 3915810 -81779944 - L1MDa LINE L1 -5253 817 564 403 217 15 152 chr15 3915817 3916015 -81779739 - MER20 DNA MER1_type -5 214 44 639 242 4 78 chr15 3916120 3916364 -81779390 - L1MDa LINE L1 -5525 545 320 524 321 29 0 chr15 3916369 3916578 -81779176 - L1MDa LINE L1 -5846 224 10 202 231 88 0 chr15 3917819 3917910 -81777844 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 727 249 41 30 chr15 3918264 3918461 -81777293 - MER58A DNA MER1_type 0 224 26 252 228 18 53 chr15 3919195 3919309 -81776445 + L1ME LINE L1 5311 5420 -883 24 32 0 0 chr15 3919336 3919367 -81776387 + AT_rich Low_complexity Low_complexity 1 31 0 532 309 98 4 chr15 3919438 3919674 -81776080 + L1ME LINE L1 5552 5809 -312 36 62 0 0 chr15 3920001 3920065 -81775689 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr15 3920187 3920222 -81775532 + AT_rich Low_complexity Low_complexity 1 35 0 1589 258 156 14 chr15 3921294 3922146 -81773608 + L1MC4 LINE L1 7067 8039 -3 851 204 196 8 chr15 3922319 3922574 -81773180 - L1MB7 LINE L1 -300 5884 5582 2480 83 0 16 chr15 3922724 3923037 -81772717 + AluY SINE Alu 1 308 -3 450 0 0 0 chr15 3923437 3923487 -81772267 + (TA)n Simple_repeat Simple_repeat 1 50 0 2087 114 4 0 chr15 3923756 3924036 -81771718 + AluSx SINE Alu 11 291 -21 63 26 0 0 chr15 3924356 3924433 -81771321 + AT_rich Low_complexity Low_complexity 1 77 0 758 181 0 30 chr15 3924608 3924741 -81771013 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr15 3924741 3924763 -81770991 + AT_rich Low_complexity Low_complexity 1 22 0 2127 87 72 0 chr15 3924901 3925177 -81770577 + AluSp SINE Alu 1 296 -17 191 35 0 35 chr15 3926143 3926172 -81769582 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1481 197 0 67 chr15 3926176 3926476 -81769278 - AluJo SINE Alu -31 281 2 1412 223 98 119 chr15 3926477 3926911 -81768843 - L1M4 LINE L1 -2428 4216 3774 424 328 8 0 chr15 3926911 3927036 -81768718 - FLAM_C SINE Alu -7 126 1 1412 223 98 119 chr15 3927036 3927833 -81767921 - L1M4 LINE L1 -2870 3774 2893 2530 65 0 0 chr15 3927833 3928127 -81767627 - AluY SINE Alu -17 294 1 1412 223 98 119 chr15 3928127 3928259 -81767495 - L1M4 LINE L1 -3751 2893 2760 1099 191 0 38 chr15 3928278 3928488 -81767266 - AluJo SINE Alu -27 285 84 537 254 106 39 chr15 3928502 3929631 -81766123 - L1M4 LINE L1 -3884 2762 1337 1126 146 3 3 chr15 3929680 3930018 -81765736 - L1PA15 LINE L1 -20 6145 5756 1837 175 47 57 chr15 3930019 3930560 -81765194 + MLT2A2 LTR ERVL 1 554 0 2347 139 70 32 chr15 3930560 3930887 -81764867 - L1PA15 LINE L1 -407 5759 5409 1792 151 43 0 chr15 3930887 3931186 -81764568 - AluSx SINE Alu 0 312 1 2347 139 70 32 chr15 3931186 3931385 -81764369 - L1PA15 LINE L1 -757 5409 5219 2121 187 22 11 chr15 3931421 3931751 -81764003 - L1M3 LINE L1 -514 5820 5482 2219 91 0 4 chr15 3931751 3932026 -81763728 - AluSq SINE Alu -39 274 1 2121 187 22 11 chr15 3932026 3932154 -81763600 - L1M3 LINE L1 -852 5482 5357 703 196 0 5 chr15 3932254 3932469 -81763285 + CT-rich Low_complexity Low_complexity 1 213 0 1054 231 30 41 chr15 3932499 3932767 -81762987 - AluJb SINE Alu -43 269 5 2004 239 62 13 chr15 3932783 3933466 -81762288 - L1M3 LINE L1 -895 5251 4536 566 121 9 0 chr15 3934135 3934251 -81761503 + (CA)n Simple_repeat Simple_repeat 2 118 0 348 64 0 0 chr15 3936950 3936997 -81758757 + (CA)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr15 3942305 3942332 -81753422 + (CA)n Simple_repeat Simple_repeat 2 28 0 318 204 0 0 chr15 3945015 3945123 -81750631 + (CA)n Simple_repeat Simple_repeat 1 108 0 230 284 0 0 chr15 3950517 3950584 -81745170 + (CA)n Simple_repeat Simple_repeat 2 68 0 297 131 0 0 chr15 3953215 3953276 -81742478 + (CA)n Simple_repeat Simple_repeat 2 62 0 297 0 0 0 chr15 3955852 3955885 -81739869 + (CA)n Simple_repeat Simple_repeat 1 33 0 201 182 0 0 chr15 3978236 3978269 -81717485 + T-rich Low_complexity Low_complexity 1 33 0 2111 141 14 0 chr15 3979383 3979680 -81716074 + AluSg SINE Alu 1 301 -9 1705 235 80 55 chr15 3979718 3980403 -81715351 - L1MDb LINE L1 -5045 1364 663 343 159 0 72 chr15 4030962 4031031 -81664723 + MER58 DNA MER1_type 2357 2420 0 1742 170 11 3 chr15 4031054 4031337 -81664417 - AluSx SINE Alu -27 285 1 1879 146 3 3 chr15 4031471 4031765 -81663989 + AluSx SINE Alu 2 295 -17 2216 102 10 3 chr15 4032317 4032610 -81663144 + AluSg SINE Alu 1 295 -15 2127 148 143 11 chr15 4032965 4033343 -81662411 - MSTA LTR MaLR 0 428 1 2060 130 7 0 chr15 4033443 4033743 -81662011 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 4033821 4033851 -81661903 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 827 181 87 0 chr15 4033858 4034007 -81661747 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 4034007 4034030 -81661724 + AT_rich Low_complexity Low_complexity 1 23 0 2674 166 58 42 chr15 4034092 4034595 -81661159 - L1MB3 LINE L1 -1 6182 5668 1885 125 0 54 chr15 4034595 4034908 -81660846 - AluSx SINE Alu -16 296 1 2674 166 58 42 chr15 4034908 4034958 -81660796 - L1MB3 LINE L1 -515 5668 5620 663 126 0 0 chr15 4034967 4035054 -81660700 - AluS SINE Alu -225 88 2 1947 226 52 21 chr15 4035061 4035584 -81660170 - MER74B LTR ERVL -82 540 2 2421 166 43 61 chr15 4035587 4035899 -81659855 - L1MB3 LINE L1 -560 5623 5307 192 97 0 0 chr15 4035899 4035930 -81659824 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2021 142 0 0 chr15 4035930 4036213 -81659541 - AluSx SINE Alu -29 283 1 2421 166 43 61 chr15 4036213 4036264 -81659490 - L1MB3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 4036264 4036571 -81659183 - AluSx SINE Alu -5 307 1 2421 166 43 61 chr15 4036571 4037044 -81658710 - L1MB3 LINE L1 -925 5258 4793 240 59 0 0 chr15 4037230 4037264 -81658490 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 4037286 4037454 -81658300 - MLT2D LTR ERVL -54 360 197 2189 122 16 0 chr15 4037455 4037758 -81657996 - AluSx SINE Alu -4 308 1 12706 182 39 20 chr15 4037759 4038240 -81657514 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 4038240 4038559 -81657195 - AluSg SINE Alu 0 310 1 12706 182 39 20 chr15 4038559 4040292 -81655462 - ERVL LTR ERVL -773 4991 3198 2160 138 0 6 chr15 4040292 4040603 -81655151 - AluSx SINE Alu -3 309 1 12706 182 39 20 chr15 4040603 4040728 -81655026 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 4040712 4040906 -81654848 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 4040908 4041030 -81654724 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 4041041 4041181 -81654573 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 4041189 4041592 -81654162 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 4041592 4041789 -81653965 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 4041825 4041849 -81653905 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 4041894 4042046 -81653708 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 4042590 4042742 -81653012 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 4042743 4042909 -81652845 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 4042937 4043238 -81652516 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 4043257 4043296 -81652458 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 4043326 4043377 -81652377 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 4043831 4044137 -81651617 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 4044429 4044515 -81651239 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 4044582 4044605 -81651149 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2180 98 0 11 chr15 4044608 4044894 -81650860 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 4044894 4045232 -81650522 - L1MC3 LINE L1 -23 7762 7393 * 3379 166 50 99 chr15 4045229 4045493 -81650261 - L1MB7 LINE L1 0 6184 5909 2444 100 0 0 chr15 4045493 4045803 -81649951 - AluSx SINE Alu -2 310 1 3379 166 50 99 chr15 4045803 4045850 -81649904 - L1MB7 LINE L1 -275 5909 5861 1719 189 0 3 chr15 4045850 4046151 -81649603 + AluJo SINE Alu 2 301 -11 3379 166 50 99 chr15 4046151 4046297 -81649457 - L1MB7 LINE L1 -323 5861 5709 1512 199 46 26 chr15 4046297 4046603 -81649151 - AluJo SINE Alu 0 312 1 3379 166 50 99 chr15 4046603 4046663 -81649091 - L1MB7 LINE L1 -475 5709 5648 2255 95 0 0 chr15 4046663 4046948 -81648806 - AluSg SINE Alu -17 293 9 3379 166 50 99 chr15 4046948 4047022 -81648732 - L1MB7 LINE L1 -536 5648 5572 1790 156 16 10 chr15 4047022 4047329 -81648425 - AluJo SINE Alu -3 309 1 1912 129 10 23 chr15 4047335 4047644 -81648110 - AluSx SINE Alu -7 305 1 3379 166 50 99 chr15 4047644 4047995 -81647759 - L1MB7 LINE L1 -617 5567 5297 2041 146 7 0 chr15 4047995 4048289 -81647465 - AluSx SINE Alu -16 296 1 3379 166 50 99 chr15 4048289 4048518 -81647236 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 4048518 4048665 -81647089 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 4048693 4048738 -81647016 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 4049203 4049239 -81646515 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 4049277 4049442 -81646312 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 4049509 4049752 -81646002 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 4049803 4050102 -81645652 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 4050175 4050250 -81645504 - MER116 DNA Mariner -6 74 1 562 127 0 64 chr15 4054976 4055086 -81640668 - FLAM_A SINE Alu 0 142 40 1514 193 10 3 chr15 4055204 4055499 -81640255 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 4055826 4055944 -81639810 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 4056170 4056317 -81639437 - L1MB7 LINE L1 -334 5850 5696 1423 109 0 0 chr15 4056466 4056650 -81639104 + AluSx SINE Alu 3 186 -126 249 250 250 9 chr15 4056673 4056785 -81638969 - L1MB7 LINE L1 -526 5640 5502 1219 157 89 8 chr15 4056827 4057063 -81638691 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 4057081 4057255 -81638499 - L1MB7 LINE L1 -733 5441 5257 383 257 16 82 chr15 4057266 4057449 -81638305 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 4057455 4057652 -81638102 - L1MB7 LINE L1 -870 5276 5056 21 36 0 0 chr15 4059387 4059415 -81636339 + AT_rich Low_complexity Low_complexity 1 28 0 327 268 113 12 chr15 4059617 4059785 -81635969 - L1MC4a LINE L1 -1918 5890 5706 2285 116 0 0 chr15 4059816 4060117 -81635637 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr15 4060133 4060161 -81635593 + AT_rich Low_complexity Low_complexity 1 28 0 1728 169 28 3 chr15 4060238 4060528 -81635226 + AluJo SINE Alu 1 297 -15 1861 118 83 17 chr15 4060791 4061079 -81634675 - AluSp SINE Alu -6 307 1 2068 127 10 0 chr15 4061737 4062037 -81633717 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 4062045 4062066 -81633688 + AT_rich Low_complexity Low_complexity 1 21 0 902 275 112 83 chr15 4062535 4063207 -81632547 - MER21B LTR ERV1 -149 714 24 2245 100 0 7 chr15 4063841 4064140 -81631614 + AluSx SINE Alu 3 299 -13 1104 165 0 0 chr15 4064140 4064310 -81631444 + AluSg/x SINE Alu 132 301 -9 26 0 0 0 chr15 4064801 4064827 -81630927 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 3 0 chr15 4065616 4065910 -81629844 - AluSq SINE Alu -18 295 1 656 259 27 22 chr15 4066294 4066479 -81629275 + MER58A DNA MER1_type 33 218 -6 427 115 0 0 chr15 4066780 4066841 -81628913 + AluS SINE Alu 2 62 -256 893 208 120 0 chr15 4269038 4269406 -81426348 + LTR54 LTR ERV1 1 450 -60 785 245 63 100 chr15 4269437 4269996 -81425758 - MLT1E LTR MaLR -4 589 1 1200 230 109 35 chr15 4270322 4270726 -81425028 - MER57B LTR ERV1 0 434 1 182 330 11 23 chr15 4270948 4271036 -81424718 - L2 LINE L2 -255 3017 2931 1040 162 47 11 chr15 4272390 4272581 -81423173 + MLT1A1 LTR MaLR 9 206 -159 2022 192 8 6 chr15 4272625 4272985 -81422769 - MLT1A1 LTR MaLR 0 365 5 1644 219 24 4 chr15 4272989 4273359 -81422395 - MLT1A1-int LTR MaLR 0 1651 1306 3027 179 22 72 chr15 4273731 4273934 -81421820 - MLT1A1-int LTR MaLR -1031 704 492 2354 90 40 0 chr15 4273934 4274235 -81421519 - AluSq SINE Alu 0 313 1 3027 179 22 72 chr15 4274235 4274772 -81420982 - MLT1A1-int LTR MaLR -1243 492 1 186 189 0 0 chr15 4274772 4274809 -81420945 + T-rich Low_complexity Low_complexity 1 37 0 2404 105 0 9 chr15 4274811 4275126 -81420628 - AluSx SINE Alu 0 312 1 1736 188 79 9 chr15 4275135 4275476 -81420278 - MLT1A1 LTR MaLR 0 365 1 199 353 12 12 chr15 4276646 4276731 -81419023 + L2 LINE L2 3188 3272 0 225 264 127 9 chr15 4277035 4277145 -81418609 - L2 LINE L2 -223 3049 2927 642 275 85 35 chr15 4277474 4277584 -81418170 + MLT1C LTR MaLR 3 106 -361 2372 92 0 10 chr15 4277584 4277887 -81417867 - AluSc SINE Alu -7 302 3 642 275 85 35 chr15 4277887 4278215 -81417539 + MLT1C LTR MaLR 106 464 -3 748 210 82 20 chr15 4279317 4279512 -81416242 + MLT2B2 LTR ERVL 1 207 -308 390 233 11 0 chr15 4279548 4279638 -81416116 + MLT2D LTR ERVL 316 406 -8 290 302 56 16 chr15 4279913 4280039 -81415715 + MIR SINE MIR 126 256 -6 1139 219 77 28 chr15 4280060 4280412 -81415342 + MLT1C LTR MaLR 6 374 -93 1326 211 111 4 chr15 4281434 4281550 -81414204 + AluJo SINE Alu 1 103 -209 213 39 0 0 chr15 4281550 4281576 -81414178 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1326 211 111 4 chr15 4281576 4281738 -81414016 + AluJo SINE Alu 103 309 -3 749 214 0 0 chr15 4281763 4281894 -81413860 + FLAM_A SINE Alu 1 131 -2 492 271 171 65 chr15 4281966 4282457 -81413297 + MLT1H LTR MaLR 7 549 0 43 47 0 0 chr15 4282670 4282734 -81413020 + AT_rich Low_complexity Low_complexity 1 64 0 2317 97 3 31 chr15 4283401 4283722 -81412032 - AluSp SINE Alu -1 312 1 495 219 0 0 chr15 4286460 4286565 -81409189 + MER45A DNA AcHobo 72 176 -2 35 24 0 0 chr15 4288021 4288063 -81407691 + AT_rich Low_complexity Low_complexity 1 42 0 1063 178 14 14 chr15 4288727 4288941 -81406813 + MLT1A1 LTR MaLR 1 214 -151 3718 103 19 17 chr15 4288941 4289467 -81406287 - MER1A DNA MER1_type 0 527 1 5074 153 37 9 chr15 4290071 4291298 -81404456 + L1PA16 LINE L1 4730 5999 -167 1989 106 81 0 chr15 4291298 4291581 -81404173 + AluSx SINE Alu 1 306 -6 5074 153 37 9 chr15 4291581 4291752 -81404002 + L1PA16 LINE L1 5999 6164 -2 238 353 0 17 chr15 4292296 4292415 -81403339 + MER58 DNA MER1_type 10 126 -2294 1692 185 34 25 chr15 4292738 4293094 -81402660 + MER46B DNA MER2_type 1 234 -2 526 154 0 39 chr15 4293214 4293318 -81402436 - L1MA6 LINE L1 0 6300 6201 1445 141 4 21 chr15 4293382 4293616 -81402138 + AluJb SINE Alu 1 230 -82 181 358 52 22 chr15 4293923 4294057 -81401697 + L3b LINE CR1 1102 1239 -344 2090 99 57 3 chr15 4294673 4294955 -81400799 - AluSc SINE Alu -12 297 1 247 340 81 36 chr15 4296621 4296930 -81398824 - L1MC/D LINE L1 -1976 5832 5510 367 335 51 10 chr15 4298700 4298897 -81396857 - L2 LINE L2 -10 3303 3099 473 175 28 34 chr15 4298912 4299457 -81396297 + (TG)n Simple_repeat Simple_repeat 1 542 0 243 79 0 0 chr15 4299575 4299613 -81396141 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 1242 145 291 27 chr15 4299817 4300154 -81395600 - MSTA LTR MaLR 0 428 3 191 281 61 37 chr15 4300746 4300828 -81394926 - MER5B DNA MER1_type -82 96 13 1890 166 0 12 chr15 4301048 4301391 -81394363 - L1MB5 LINE L1 -194 6478 6140 1752 156 43 3 chr15 4301402 4301728 -81394026 + MER47A DNA MER2_type 28 366 0 1220 167 31 0 chr15 4301732 4301960 -81393794 - L1MB5 LINE L1 -540 6138 5904 * 3256 226 64 29 chr15 4301954 4303012 -81392742 - L1MB5 LINE L1 -1621 5023 3929 436 320 101 4 chr15 4303137 4303365 -81392389 - L1MB5 LINE L1 -6291 251 2 191 259 12 86 chr15 4304044 4304125 -81391629 - MIR3 SINE MIR -8 200 126 1765 73 20 4 chr15 4304233 4304478 -81391276 + L1PA10 LINE L1 5918 6166 -2 1740 149 11 0 chr15 4305373 4305642 -81390112 + AluSx SINE Alu 41 312 0 390 362 54 0 chr15 4305917 4306102 -81389652 - MIR SINE MIR -1 261 67 2089 98 79 25 chr15 4307287 4307643 -81388111 + THE1C LTR MaLR 1 375 0 759 233 132 35 chr15 4307716 4308007 -81387747 - MLT1E2 LTR MaLR -258 396 51 469 278 115 53 chr15 4308079 4308288 -81387466 - MIR SINE MIR -35 227 6 1304 167 40 4 chr15 4311740 4311968 -81383786 - MER46A DNA MER2_type 0 236 1 1896 216 98 5 chr15 4312939 4313366 -81382388 - MLT1C LTR MaLR 0 467 1 371 252 86 29 chr15 4313972 4314111 -81381643 - L2 LINE L2 -2 3311 3165 1972 129 0 4 chr15 4314189 4314468 -81381286 + AluSx SINE Alu 27 304 -8 227 318 45 23 chr15 4316735 4316867 -81378887 - LTR16B LTR ERVL -6 458 324 3248 233 38 55 chr15 4317156 4319166 -81376588 + L1MD2 LINE L1 4147 6133 -226 254 231 201 22 chr15 4319172 4319306 -81376448 + L1MD2 LINE L1 6191 6348 -11 21 0 0 0 chr15 4320835 4320856 -81374898 + AT_rich Low_complexity Low_complexity 1 21 0 2003 115 0 11 chr15 4321329 4321665 -81374089 + AluSx SINE Alu 1 333 0 228 226 0 19 chr15 4321962 4322015 -81373739 + C-rich Low_complexity Low_complexity 1 52 0 22 35 7 0 chr15 4325122 4325198 -81370556 + GC_rich Low_complexity Low_complexity 1 36 0 22 103 0 0 chr15 4325236 4325314 -81370440 + GC_rich Low_complexity Low_complexity 1 78 0 943 155 0 12 chr15 4326175 4326343 -81369411 + AluJb SINE Alu 1 166 -146 1920 121 0 0 chr15 4326781 4327054 -81368700 - AluSx SINE Alu -36 276 4 719 252 133 13 chr15 4327131 4327365 -81368389 - MIR SINE MIR 0 262 1 2785 10 0 0 chr15 4327896 4328207 -81367547 + AluYb8 SINE Alu 1 311 -7 289 276 0 23 chr15 4328872 4328959 -81366795 - L1ME3 LINE L1 -7 6155 6071 1877 177 88 20 chr15 4330444 4330538 -81365216 - L1MC2 LINE L1 0 6344 6258 361 36 36 0 chr15 4330538 4330593 -81365161 + (CA)n Simple_repeat Simple_repeat 2 58 0 1877 177 88 20 chr15 4330593 4330939 -81364815 - L1MC2 LINE L1 -86 6258 5874 315 291 103 14 chr15 4331390 4331756 -81363998 - L1ME LINE L1 -4869 1671 1262 2635 124 41 5 chr15 4331862 4332273 -81363481 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr15 4333203 4333225 -81362529 + AT_rich Low_complexity Low_complexity 1 22 0 408 289 162 7 chr15 4333426 4333568 -81362186 + MER5A DNA MER1_type 18 181 -8 507 335 31 11 chr15 4335488 4335679 -81360075 - L2 LINE L2 0 3313 3119 2013 113 3 0 chr15 4335900 4336184 -81359570 + AluSg SINE Alu 1 285 -25 2232 175 31 26 chr15 4336310 4336767 -81358987 + MLT1C LTR MaLR 9 467 0 3969 112 28 0 chr15 4336812 4337376 -81358378 - LTR19B LTR ERV1 0 580 1 629 207 39 96 chr15 4337600 4337808 -81357946 - MLT1A1 LTR MaLR -2 363 168 797 199 145 11 chr15 4338434 4338800 -81356954 - MER31B LTR ERV1 0 543 1 1764 157 7 0 chr15 4340684 4340971 -81354783 - AluJb SINE Alu -23 289 1 282 289 11 22 chr15 4342592 4342682 -81353072 - MLT1J1 LTR MaLR -141 305 217 330 286 62 34 chr15 4342696 4342874 -81352880 - MLT1J LTR MaLR -327 184 2 458 327 44 10 chr15 4345373 4345578 -81350176 - L3 LINE CR1 -151 1426 1215 1652 134 0 96 chr15 4345779 4346122 -81349632 + AluY SINE Alu 1 310 -1 197 357 31 10 chr15 4346350 4346448 -81349306 + MIR3 SINE MIR 102 201 -7 1997 136 110 18 chr15 4346800 4347190 -81348564 + MSTB LTR MaLR 1 426 0 218 176 20 0 chr15 4348672 4348723 -81347031 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 309 266 187 12 chr15 4350885 4351126 -81344628 + LTR16A1 LTR ERVL 75 357 -100 439 248 16 16 chr15 4351220 4351345 -81344409 + LTR67 LTR ERVL 426 550 -7 1204 203 127 152 chr15 4351367 4352145 -81343609 - LTR41 LTR ERVL -10 763 5 389 279 36 89 chr15 4352981 4353228 -81342526 + L1ME4a LINE L1 5885 6118 -3 252 212 30 15 chr15 4355819 4355885 -81339869 + CT-rich Low_complexity Low_complexity 4 70 0 386 312 95 18 chr15 4356002 4356287 -81339467 - MLT1J1 LTR MaLR -8 438 132 198 0 0 0 chr15 4356478 4356500 -81339254 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 782 286 84 35 chr15 4357132 4357387 -81338367 - MLT1E LTR MaLR 0 593 321 1949 110 52 55 chr15 4357387 4357752 -81338002 - THE1B LTR MaLR 0 364 1 782 286 84 35 chr15 4357752 4357783 -81337971 - MLT1E LTR MaLR -272 321 293 250 304 13 0 chr15 4357861 4357940 -81337814 - MLT1E LTR MaLR -436 157 78 2041 122 0 3 chr15 4358058 4358361 -81337393 - AluSg SINE Alu -8 302 1 2223 89 7 0 chr15 4361839 4362141 -81333613 - AluSx SINE Alu -8 304 1 4796 172 35 22 chr15 4362277 4363588 -81332166 + L1MB3 LINE L1 4849 6175 -8 1629 201 0 7 chr15 4365023 4365327 -81330427 - AluJo SINE Alu -10 302 1 940 218 13 0 chr15 4365691 4365916 -81329838 - L1MA4 LINE L1 -3 6297 6070 2287 63 0 16 chr15 4366169 4366484 -81329270 + AluY SINE Alu 1 310 -1 327 305 35 0 chr15 4366678 4366808 -81328946 + MIR SINE MIR 25 166 -96 253 264 239 39 chr15 4367311 4367466 -81328288 - MIR SINE MIR -26 236 51 2570 51 0 6 chr15 4367515 4367827 -81327927 + AluY SINE Alu 1 310 -1 286 290 0 0 chr15 4368676 4368745 -81327009 + MIR SINE MIR 76 144 -64 644 300 59 39 chr15 4369010 4369347 -81326407 + L1MB1 LINE L1 242 585 -5546 239 125 429 0 chr15 4369562 4369618 -81326136 + MADE1 DNA Mariner 1 80 0 376 257 30 10 chr15 4369640 4369742 -81326012 + L1M3d LINE L1 898 999 -5132 * 3923 230 66 64 chr15 4369732 4370577 -81325177 + L1MB1 LINE L1 662 1504 -4706 449 161 0 0 chr15 4370577 4370658 -81325096 + AluJ/FRAM SINE Alu 232 312 0 3923 230 66 64 chr15 4370658 4371197 -81324557 + L1MB1 LINE L1 1504 2040 -4170 2619 36 0 10 chr15 4371197 4371500 -81324254 + AluY SINE Alu 1 300 -11 3923 230 66 64 chr15 4371500 4372797 -81322957 + L1MB1 LINE L1 2040 3435 -2775 2697 236 30 10 chr15 4372801 4373533 -81322221 + L1MB1 LINE L1 4493 5239 -971 1151 184 22 4 chr15 4373530 4373758 -81321996 + L1MB1 LINE L1 5778 6009 -223 * 505 287 35 54 chr15 4373996 4374257 -81321497 - L2 LINE L2 -4 3309 3054 689 346 26 8 chr15 4374386 4374892 -81320862 + L1MEc LINE L1 1284 1798 -4598 2481 61 0 3 chr15 4375020 4375317 -81320437 - AluY SINE Alu -15 296 1 452 291 30 39 chr15 4375836 4376070 -81319684 - L1ME2 LINE L1 -10 6154 5923 * 871 234 68 0 chr15 4376067 4376315 -81319439 + L1ME2 LINE L1 5647 5911 -253 3391 98 34 23 chr15 4376496 4377025 -81318729 - L1PA14 LINE L1 -1 6160 5626 1381 176 0 5 chr15 4378871 4379092 -81316662 - AluJb SINE Alu -21 291 72 1656 107 5 32 chr15 4380382 4380909 -81314845 + MER4B LTR ERV1 1 610 0 279 324 6 59 chr15 4380917 4381071 -81314683 - MIR SINE MIR -62 146 24 276 30 0 0 chr15 4381342 4381375 -81314379 + (GA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 4381606 4381628 -81314126 + AT_rich Low_complexity Low_complexity 1 22 0 199 377 0 0 chr15 4382156 4382233 -81313521 + L2 LINE L2 3196 3272 0 256 300 12 12 chr15 4382381 4382461 -81313293 + Charlie8 DNA MER1_type 154 233 -2184 1889 284 86 57 chr15 4382502 4383641 -81312113 + L1MC4a LINE L1 -244 927 -5353 1802 254 36 39 chr15 4383679 4384514 -81311240 + L1MC4a LINE L1 1314 2307 -4256 2490 207 33 37 chr15 4384521 4385176 -81310578 + L1MC4a LINE L1 2329 2981 -3401 1522 164 114 18 chr15 4385176 4385456 -81310298 - AluJb SINE Alu -5 307 1 2490 207 33 37 chr15 4385456 4385527 -81310227 + L1MC4a LINE L1 2981 3051 -3331 376 304 62 0 chr15 4385528 4385640 -81310114 + MER94 DNA DNA 15 133 -1 704 110 0 42 chr15 4385867 4385985 -81309769 - L1MA3 LINE L1 -19 6286 6174 793 165 15 0 chr15 4386112 4386245 -81309509 - AluJo SINE Alu -171 141 7 5265 182 37 7 chr15 4386455 4387141 -81308613 - L1 LINE L1 -1049 5097 4365 207 0 0 0 chr15 4387141 4387164 -81308590 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5265 182 37 7 chr15 4387164 4387550 -81308204 - L1 LINE L1 -1781 4365 3992 5383 160 14 23 chr15 4387557 4387766 -81307988 + L1MA7 LINE L1 5042 5251 -1040 2072 122 26 13 chr15 4387766 4388070 -81307684 - AluSx SINE Alu 0 312 5 5383 160 14 23 chr15 4388070 4389107 -81306647 + L1MA7 LINE L1 5251 6281 -10 229 239 150 17 chr15 4389154 4389388 -81306366 + L1MC4a LINE L1 3199 3463 -2919 450 53 0 0 chr15 4389635 4389692 -81306062 + (CA)n Simple_repeat Simple_repeat 2 58 0 240 35 0 0 chr15 4389691 4389720 -81306034 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 241 264 41 50 chr15 4389725 4389846 -81305908 + L1MC4a LINE L1 3759 3878 -2504 413 329 82 30 chr15 4390059 4391165 -81304589 + L1MC4a LINE L1 4306 5469 -913 3443 243 83 110 chr15 4391195 4391294 -81304460 + L1MC4a LINE L1 5518 5618 -2426 2340 113 0 0 chr15 4391294 4391604 -81304150 - AluSg SINE Alu 0 310 1 3443 243 83 110 chr15 4391604 4393950 -81301804 + L1MC4a LINE L1 5618 7897 -147 1549 294 86 11 chr15 4395754 4395910 -81299844 + L1ME3 LINE L1 5272 5415 -747 2287 79 3 13 chr15 4395910 4396214 -81299540 + AluSc SINE Alu 1 301 -8 1549 294 86 11 chr15 4396214 4396720 -81299034 + L1ME3 LINE L1 5415 5984 -178 1860 97 0 73 chr15 4396841 4397155 -81298599 + AluSx SINE Alu 20 312 0 1158 183 10 0 chr15 4397846 4398048 -81297706 + AluJb SINE Alu 103 306 -6 368 183 11 0 chr15 4398055 4398148 -81297606 + GA-rich Low_complexity Low_complexity 3 96 0 22 56 0 0 chr15 4399832 4399868 -81295886 + AT_rich Low_complexity Low_complexity 1 36 0 3324 110 24 24 chr15 4399999 4400611 -81295143 + L1PA15 LINE L1 5069 5681 -484 1799 174 10 3 chr15 4400611 4400910 -81294844 + AluJb SINE Alu 1 301 -11 3324 110 24 24 chr15 4400910 4400987 -81294767 + L1PA15 LINE L1 5681 5756 -409 940 166 7 0 chr15 4400994 4401145 -81294609 + FRAM SINE Alu 9 160 -16 2134 122 18 9 chr15 4401145 4401481 -81294273 + L1PA15 LINE L1 5814 6152 -13 2107 123 3 0 chr15 4401488 4401790 -81293964 + AluSx SINE Alu 1 303 -9 352 298 191 6 chr15 4402165 4402333 -81293421 + MLT1H LTR MaLR 83 281 -268 283 170 0 0 chr15 4402359 4402406 -81293348 + L1M1 LINE L1 5816 5862 -438 1313 92 0 0 chr15 4402622 4402795 -81292959 + AluSc SINE Alu 134 306 -3 249 33 0 0 chr15 4402917 4402947 -81292807 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 235 300 190 0 chr15 4403090 4403190 -81292564 + MLT1H LTR MaLR 431 549 0 6116 76 47 37 chr15 4403320 4404829 -81290925 + SVA Other Other 327 1449 0 1000 182 0 18 chr15 4404970 4405167 -81290587 - AluJo SINE Alu 0 312 135 338 141 0 16 chr15 4405167 4405231 -81290523 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 770 176 8 0 chr15 4405231 4405362 -81290392 - AluJo SINE Alu -169 133 2 261 0 0 0 chr15 4406087 4406116 -81289638 + (A)n Simple_repeat Simple_repeat 1 29 0 810 281 9 5 chr15 4406719 4406936 -81288818 + L1MEc LINE L1 32 249 -6147 2258 264 36 70 chr15 4406959 4407121 -81288633 + L1MEc LINE L1 415 581 -5815 2541 127 7 56 chr15 4407121 4407571 -81288183 - MSTA LTR MaLR 0 428 1 2258 264 36 70 chr15 4407571 4408607 -81287147 + L1MEc LINE L1 581 1572 -4824 1142 215 66 51 chr15 4408607 4408942 -81286812 + MER2 DNA MER2_type 5 344 0 2258 264 36 70 chr15 4408942 4408979 -81286775 + L1MEc LINE L1 1572 1609 -4787 2008 324 82 30 chr15 4409003 4409881 -81285873 + L1M4b LINE L1 -562 361 -5923 577 256 65 38 chr15 4410453 4411053 -81284701 + L1M4b LINE L1 655 1238 -5325 2282 68 0 10 chr15 4411053 4411345 -81284409 + AluY SINE Alu 1 289 -22 270 0 0 0 chr15 4411353 4411383 -81284371 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 577 256 65 38 chr15 4411383 4411841 -81283913 + L1M4b LINE L1 1244 1989 -4574 25 31 0 0 chr15 4411929 4411961 -81283793 + AT_rich Low_complexity Low_complexity 1 32 0 2362 254 29 16 chr15 4412433 4413281 -81282473 + L1M4b LINE L1 2299 3112 -3270 13488 162 24 19 chr15 4413286 4415987 -81279767 + L1MA2 LINE L1 3022 5706 -2017 2387 87 3 0 chr15 4415987 4416296 -81279458 + AluY SINE Alu 1 310 -1 13488 162 24 19 chr15 4416296 4416927 -81278827 + L1MA2 LINE L1 5706 6332 -1391 2059 124 0 0 chr15 4416927 4417201 -81278553 + AluSg SINE Alu 25 298 -12 13488 162 24 19 chr15 4417201 4418514 -81277240 + L1MA2 LINE L1 6332 7721 -2 1571 218 66 61 chr15 4418545 4419104 -81276650 + L1MB7 LINE L1 5613 6174 -10 2696 234 76 26 chr15 4419140 4420345 -81275409 + L1MEc LINE L1 1997 3242 -2973 249 276 0 0 chr15 4420428 4420486 -81275268 + MIR3 SINE MIR 149 206 -2 1696 71 0 5 chr15 4420786 4420996 -81274758 - AluY SINE Alu -69 242 34 1631 152 4 12 chr15 4424221 4424477 -81271277 - AluJo SINE Alu -19 293 40 317 324 9 19 chr15 4425947 4426055 -81269699 - MIR3 SINE MIR -18 190 84 564 262 38 0 chr15 4426464 4426647 -81269107 + L1M4 LINE L1 2687 2876 -3270 307 190 0 0 chr15 4426655 4426713 -81269041 + L1ME LINE L1 5685 5742 -422 1326 99 0 20 chr15 4426833 4427034 -81268720 - L1PA13 LINE L1 -4 6159 5963 2446 198 118 39 chr15 4427034 4427218 -81268536 + L1M4 LINE L1 2867 3035 -3111 2359 74 0 16 chr15 4427218 4427530 -81268224 - AluY SINE Alu -4 307 1 2446 198 118 39 chr15 4427530 4428321 -81267433 + L1M4 LINE L1 3035 3919 -2227 22 35 0 0 chr15 4479383 4479412 -81216342 + AT_rich Low_complexity Low_complexity 1 29 0 1504 223 76 3 chr15 4479569 4479936 -81215818 + MER89 LTR ERV1 166 559 0 890 173 162 5 chr15 4480262 4480447 -81215307 + AluJo SINE Alu 81 294 -18 33 25 0 0 chr15 4481134 4481174 -81214580 + AT_rich Low_complexity Low_complexity 1 40 0 1983 157 141 11 chr15 4481225 4481534 -81214220 + MSTB LTR MaLR 3 371 -55 2049 103 65 3 chr15 4481534 4481825 -81213929 - AluSg SINE Alu -1 309 1 1983 157 141 11 chr15 4481825 4481890 -81213864 + MSTB LTR MaLR 371 426 0 36 65 0 49 chr15 4482507 4482630 -81213124 + AT_rich Low_complexity Low_complexity 1 117 0 795 153 13 38 chr15 4482630 4482787 -81212967 - FRAM SINE Alu -26 150 1 2378 165 85 6 chr15 4483084 4483885 -81211869 - L1M2 LINE L1 -536 5755 4895 1340 172 93 26 chr15 4483937 4484205 -81211549 - AluJo SINE Alu -25 287 2 3603 153 38 11 chr15 4484860 4485493 -81210261 - L1MA5 LINE L1 0 6300 5651 2253 174 62 24 chr15 4485733 4486199 -81209555 + MER72 LTR ERV1 239 722 0 1066 151 25 10 chr15 4488118 4488317 -81207437 - MER65A LTR ERV1 0 445 244 1295 183 65 48 chr15 4489236 4489680 -81206074 + MER89 LTR ERV1 9 559 0 401 304 190 27 chr15 4490682 4491051 -81204703 + MLT1J LTR MaLR 83 511 0 22 56 0 0 chr15 4493358 4493394 -81202360 + AT_rich Low_complexity Low_complexity 1 36 0 1169 136 61 24 chr15 4493553 4493766 -81201988 + MER65A LTR ERV1 1 221 -224 22 0 0 0 chr15 4493866 4493888 -81201866 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 4494078 4494101 -81201653 + AT_rich Low_complexity Low_complexity 1 23 0 406 285 65 27 chr15 4494294 4494480 -81201274 + L1ME2 LINE L1 5707 5899 -265 349 262 44 44 chr15 4494526 4494765 -81200989 - L1ME LINE L1 -5007 1076 834 1179 129 0 0 chr15 4494771 4494941 -81200813 - AluSp SINE Alu -7 306 137 557 285 52 22 chr15 4494951 4495065 -81200689 - L1ME LINE L1 -5194 876 767 2062 119 22 19 chr15 4495065 4495377 -81200377 - AluSq SINE Alu 0 313 1 557 285 52 22 chr15 4495377 4495632 -81200122 - L1ME LINE L1 -5303 767 508 2133 142 0 0 chr15 4496445 4496748 -81199006 - AluSq SINE Alu 0 313 11 1378 66 12 0 chr15 4496903 4497069 -81198685 + L1PA7 LINE L1 5985 6152 -2 21 0 0 0 chr15 4497080 4497101 -81198653 + AT_rich Low_complexity Low_complexity 1 21 0 2469 122 98 0 chr15 4497104 4497482 -81198272 + MER4C LTR ERV1 51 465 0 718 283 101 24 chr15 4497482 4498029 -81197725 - L1MCa LINE L1 -3985 2622 2034 6944 140 46 9 chr15 4498041 4499223 -81196531 - Tigger3b DNA MER2_type -1 1230 6 384 284 36 47 chr15 4499388 4499633 -81196121 - L1MCa LINE L1 -4452 2155 1800 * 937 263 25 25 chr15 4499632 4499913 -81195841 + L1M4b LINE L1 400 680 -6179 24 0 0 0 chr15 4500531 4500555 -81195199 + AT_rich Low_complexity Low_complexity 1 24 0 596 248 25 12 chr15 4501021 4501182 -81194572 - MER5A DNA MER1_type -26 163 1 720 143 9 0 chr15 4501243 4501348 -81194406 + AluJb SINE Alu 2 107 -205 2144 165 98 73 chr15 4501715 4502279 -81193475 + MER34C LTR ERV1 1 578 -7 440 277 69 27 chr15 4503326 4503518 -81192236 - MIR SINE MIR -24 238 40 1282 177 53 87 chr15 4504143 4504521 -81191233 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr15 4506800 4506836 -81188918 + (CA)n Simple_repeat Simple_repeat 1 36 0 4797 140 24 40 chr15 4507634 4508067 -81187687 + L1PA14 LINE L1 4343 4781 -1380 2190 104 0 3 chr15 4508067 4508364 -81187390 + AluSx SINE Alu 1 296 -16 4797 140 24 40 chr15 4508364 4509345 -81186409 + L1PA14 LINE L1 4781 5728 -433 3109 97 27 0 chr15 4509445 4509856 -81185898 + L1PA14 LINE L1 5735 6156 -5 1023 173 24 0 chr15 4510228 4510396 -81185358 - FRAM SINE Alu -10 166 1 1609 168 0 42 chr15 4510418 4510727 -81185027 - AluJb SINE Alu -16 296 1 240 111 0 0 chr15 4512087 4512123 -81183631 + (A)n Simple_repeat Simple_repeat 1 36 0 434 288 109 71 chr15 4512185 4512553 -81183201 + L2 LINE L2 2928 3309 -4 2005 112 54 20 chr15 4512628 4512924 -81182830 - AluSx SINE Alu -6 306 1 1721 70 19 0 chr15 4513892 4514105 -81181649 - L1PA7 LINE L1 -3 6151 5935 1953 39 0 4 chr15 4514105 4514334 -81181420 + L1PA7 LINE L1 5718 5945 -209 5692 170 110 78 chr15 4515348 4515924 -81179830 - L1MC3 LINE L1 -7 7778 7222 238 215 0 118 chr15 4515924 4516017 -81179737 - MLT1D LTR MaLR -443 124 43 5692 170 110 78 chr15 4516017 4516891 -81178863 - L1MC3 LINE L1 -563 7222 6187 781 266 113 38 chr15 4516887 4517534 -81178220 + L1ME LINE L1 895 1565 -4515 * 1029 114 60 0 chr15 4517602 4517751 -81178003 - AluSq SINE Alu -12 301 144 2952 117 3 0 chr15 4517751 4518143 -81177611 + MER1A DNA MER1_type 133 525 -4 396 200 0 0 chr15 4518158 4518228 -81177526 - MLT1D LTR MaLR -435 70 1 2465 77 3 0 chr15 4518297 4518596 -81177158 + AluY SINE Alu 1 300 -11 367 282 31 11 chr15 4518786 4518939 -81176815 - L1ME LINE L1 -567 5595 5434 533 289 58 0 chr15 4519140 4519348 -81176406 + L1ME LINE L1 2398 2617 -3463 249 257 95 0 chr15 4520335 4520409 -81175345 - L2 LINE L2 -4 3268 3188 253 185 154 0 chr15 4522429 4522494 -81173260 - MIR3 SINE MIR -48 160 86 849 158 129 0 chr15 4523497 4523668 -81172086 + LOR1b LTR ERV1 1 193 -268 515 136 45 0 chr15 4523669 4523757 -81171997 + LOR1b LTR ERV1 370 461 0 190 328 156 26 chr15 4524298 4524490 -81171264 - L3 LINE CR1 -41 1536 1320 212 322 299 0 chr15 4524626 4524800 -81170954 - MIR SINE MIR 0 262 37 1758 180 59 73 chr15 4526152 4526635 -81169119 + LTR39 LTR ERV1 1 395 -388 230 158 0 0 chr15 4526605 4526643 -81169111 + MER4D LTR ERV1 244 281 -591 * 2105 175 29 11 chr15 4526681 4527058 -81168696 + LTR39 LTR ERV1 400 783 0 517 235 74 20 chr15 4528514 4528663 -81167091 + MER34 LTR ERV1 1 157 -385 941 189 112 58 chr15 4528729 4528988 -81166766 + AluJb SINE Alu 1 273 -39 671 62 0 14 chr15 4529722 4529822 -81165932 - L1P5 LINE L1 -387 5764 5672 3630 12 5 0 chr15 4529830 4530241 -81165513 + L1HS LINE L1 5741 6153 -2 268 43 21 21 chr15 4530246 4530293 -81165461 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 266 358 98 17 chr15 4532846 4533019 -81162735 - MIR SINE MIR -74 188 2 1273 157 50 5 chr15 4533349 4533754 -81162000 + LTR54 LTR ERV1 8 510 0 2063 159 31 48 chr15 4534043 4534464 -81161290 + L1MB3 LINE L1 5761 6174 -9 222 296 0 0 chr15 4536509 4536563 -81159191 + (TG)n Simple_repeat Simple_repeat 1 54 0 1775 171 39 47 chr15 4536921 4537302 -81158452 + MLT1B LTR MaLR 2 379 -11 480 155 0 0 chr15 4537562 4537701 -81158053 + AluS SINE Alu 227 365 0 231 314 35 0 chr15 4538014 4538100 -81157654 + MIR SINE MIR 51 139 -123 331 260 40 20 chr15 4538244 4538344 -81157410 - L2 LINE L2 0 3313 3212 14220 193 17 15 chr15 4539877 4543989 -81151765 + L1PA15 LINE L1 2047 6164 -1 678 299 104 8 chr15 4544299 4544664 -81151090 + L1ME LINE L1 5329 5728 -393 318 209 32 0 chr15 4545496 4545654 -81150100 + CT-rich Low_complexity Low_complexity 1 163 0 204 40 0 0 chr15 4545654 4545679 -81150075 + (CA)n Simple_repeat Simple_repeat 1 25 0 452 286 65 16 chr15 4546231 4546416 -81149338 + MER58A DNA MER1_type 26 219 -5 440 261 0 6 chr15 4546954 4547134 -81148620 + GA-rich Low_complexity Low_complexity 1 179 0 2117 166 119 5 chr15 4547200 4547579 -81148175 - MSTB LTR MaLR -4 422 1 7456 63 11 0 chr15 4547860 4548959 -81146795 - L1PA7 LINE L1 -3 6151 5049 2703 109 12 0 chr15 4548959 4549362 -81146392 + L1P LINE L1 3199 3606 -2540 489 214 10 0 chr15 4549767 4549865 -81145889 - Tigger5 DNA MER2_type 0 2323 2225 228 202 112 56 chr15 4550002 4550091 -81145663 + MIR SINE MIR 61 154 -108 240 266 159 18 chr15 4550114 4550227 -81145527 - MIR SINE MIR -9 253 125 273 226 107 0 chr15 4550983 4551067 -81144687 + L1MDb LINE L1 1013 1105 -5438 2161 138 0 0 chr15 4551081 4551393 -81144361 + AluSx SINE Alu 1 312 0 1991 100 38 0 chr15 4551396 4551657 -81144097 + AluSc SINE Alu 1 271 -38 264 149 0 0 chr15 4551665 4551712 -81144042 + (GA)n Simple_repeat Simple_repeat 2 48 0 3597 229 106 40 chr15 4551716 4553118 -81142636 + L1MDb LINE L1 1067 2560 -3980 44951 36 3 2 chr15 4553130 4559276 -81136478 + L1PA3 LINE L1 1 6154 -1 4802 176 90 10 chr15 4559294 4560981 -81134773 + L1PA16 LINE L1 4352 6166 0 3612 268 36 26 chr15 4560987 4562412 -81133342 + L1MDb LINE L1 2555 3993 -2547 230 263 18 0 chr15 4562449 4562506 -81133248 + L2 LINE L2 3180 3237 -76 2395 175 25 47 chr15 4562514 4563027 -81132727 + MER34B LTR ERV1 1 502 -63 189 147 0 0 chr15 4563065 4563099 -81132655 + MIR SINE MIR 218 251 -11 285 311 59 8 chr15 4563515 4563634 -81132120 + MIR SINE MIR 4 128 -134 258 384 64 5 chr15 4564326 4564545 -81131209 - MIR SINE MIR -20 242 11 257 127 38 51 chr15 4564976 4565055 -81130699 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 186 171 0 0 chr15 4566324 4566365 -81129389 + (CA)n Simple_repeat Simple_repeat 1 41 0 3747 133 33 9 chr15 4567884 4568522 -81127232 + MER39B LTR ERV1 1 653 0 1595 162 87 21 chr15 4568816 4569253 -81126501 + MER31A LTR ERV1 1 542 -1 1767 171 71 149 chr15 4569298 4570084 -81125670 + LTR8A LTR ERV1 1 725 -2 203 178 22 22 chr15 4570349 4570394 -81125360 + L2 LINE L2 3026 3070 -202 259 250 48 48 chr15 4570792 4570896 -81124858 - MER103 DNA DNA -21 145 42 207 100 0 0 chr15 4570939 4570969 -81124785 + (T)n Simple_repeat Simple_repeat 1 30 0 519 238 81 104 chr15 4571991 4572373 -81123381 + L1MC5 LINE L1 6695 6965 -996 386 19 0 19 chr15 4572373 4572425 -81123329 + (GA)n Simple_repeat Simple_repeat 1 51 0 519 238 81 104 chr15 4572425 4572610 -81123144 + L1MC5 LINE L1 6965 7153 -808 1312 216 16 44 chr15 4573094 4573409 -81122345 - AluJo SINE Alu -6 306 1 982 257 120 14 chr15 4574819 4575177 -81120577 + MSTD LTR MaLR 1 396 0 474 120 0 0 chr15 4575426 4575501 -81120253 + (TA)n Simple_repeat Simple_repeat 1 75 0 1035 268 68 78 chr15 4576362 4577247 -81118507 - L1MEc LINE L1 -4110 2286 1411 370 214 0 12 chr15 4577248 4577332 -81118422 + MLT1A2 LTR MaLR 281 363 -11 309 307 84 46 chr15 4577523 4577976 -81117778 + L2 LINE L2 2808 3277 -36 1514 207 13 0 chr15 4578126 4578431 -81117323 - MLT1A1 LTR MaLR -2 363 55 319 280 19 0 chr15 4581435 4581542 -81114212 + L3 LINE CR1 1179 1287 -290 275 276 21 80 chr15 4582251 4582490 -81113264 + L1MC4 LINE L1 7455 7679 -363 406 266 114 45 chr15 4582619 4582909 -81112845 + L1MC4 LINE L1 7732 8041 -1 481 177 146 10 chr15 4583367 4583463 -81112291 - FRAM SINE Alu -25 151 43 613 175 0 10 chr15 4583588 4583691 -81112063 + AluJo SINE Alu 87 188 -124 506 206 10 0 chr15 4583689 4583791 -81111963 - AluJo/FLAM SINE Alu -209 103 1 * 359 265 31 95 chr15 4585209 4585526 -81110228 + L1M4 LINE L1 4896 5192 -954 1145 199 75 39 chr15 4585536 4585817 -81109937 + LTR40a LTR ERVL 229 519 0 252 284 30 67 chr15 4585996 4586130 -81109624 + HAL1 LINE L1 581 709 -1798 259 261 19 45 chr15 4586273 4586430 -81109324 + HAL1 LINE L1 926 1078 -1429 366 271 66 22 chr15 4586813 4586994 -81108760 + HAL1 LINE L1 1661 1849 -658 360 323 105 28 chr15 4587235 4587515 -81108239 + HAL1 LINE L1 2121 2435 -72 2111 143 0 0 chr15 4587515 4587809 -81107945 - AluSx SINE Alu -18 294 1 360 323 105 28 chr15 4587809 4587881 -81107873 + HAL1 LINE L1 2435 2500 -7 324 286 161 0 chr15 4589311 4589423 -81106331 - MIR SINE MIR -96 166 37 21 0 0 0 chr15 4590322 4590343 -81105411 + AT_rich Low_complexity Low_complexity 1 21 0 2386 244 63 49 chr15 4590351 4590677 -81105077 + L1MD1 LINE L1 27 347 -6193 2455 91 0 0 chr15 4590677 4590986 -81104768 - AluY SINE Alu -2 309 1 2386 244 63 49 chr15 4590986 4592016 -81103738 + L1MD1 LINE L1 347 1558 -4982 1792 240 41 21 chr15 4592067 4592683 -81103071 + L1M4 LINE L1 3544 4171 -1975 280 48 71 0 chr15 4592684 4592726 -81103028 + MER31A LTR ERV1 1 45 -440 1759 209 63 23 chr15 4592730 4593251 -81102503 + L1MCb LINE L1 603 1144 -4901 1432 245 57 33 chr15 4593304 4593843 -81101911 + L1M4 LINE L1 4431 4986 -1160 2532 37 0 3 chr15 4593843 4594142 -81101612 + AluY SINE Alu 1 298 -13 1432 245 57 33 chr15 4594142 4594177 -81101577 + L1M4 LINE L1 4986 5019 -1127 249 136 0 34 chr15 4594292 4594351 -81101403 + L1M LINE L1 5304 5360 -999 * 1759 270 46 16 chr15 4594337 4595138 -81100616 + L1MD1 LINE L1 4861 5685 -855 1423 246 35 22 chr15 4595138 4595541 -81100213 - MLT1D LTR MaLR -90 415 8 2063 183 27 11 chr15 4595544 4595992 -81099762 + L1MD1 LINE L1 6182 6636 0 258 253 40 0 chr15 4596977 4597052 -81098702 - MIR SINE MIR -111 151 74 324 196 0 0 chr15 4597241 4597297 -81098457 - MLT1D LTR MaLR -119 386 331 7262 235 55 51 chr15 4597309 4600520 -81095234 - L1M4 LINE L1 -1298 5346 2149 1981 128 0 11 chr15 4600520 4600830 -81094924 - AluY SINE Alu 0 308 2 7262 235 55 51 chr15 4600830 4601338 -81094416 - L1M4 LINE L1 -4495 2149 1644 778 0 31 0 chr15 4601338 4601435 -81094319 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 7262 235 55 51 chr15 4601435 4602979 -81092775 - L1M4 LINE L1 -5000 1644 16 1630 196 0 7 chr15 4603651 4603931 -81091823 + AluJo SINE Alu 1 278 -34 219 36 0 0 chr15 4603937 4603965 -81091789 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1549 168 80 18 chr15 4603984 4604270 -81091484 + AluJb SINE Alu 9 312 0 2068 101 5 69 chr15 4604416 4604791 -81090963 + THE1A LTR MaLR 5 355 0 1651 219 83 59 chr15 4605260 4605836 -81089918 + LTR68 LTR ERV1 21 610 -130 459 214 68 48 chr15 4606187 4606439 -81089315 + HAL1 LINE L1 899 1155 -1352 3999 184 73 12 chr15 4606565 4607376 -81088378 - MER21B LTR ERV1 -3 860 1 2517 162 30 48 chr15 4607438 4607962 -81087792 + MLT2B3 LTR ERVL 1 515 -39 258 105 0 0 chr15 4607987 4608025 -81087729 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 607 247 77 13 chr15 4608095 4608330 -81087424 + HAL1 LINE L1 1338 1587 -920 329 245 47 0 chr15 4608814 4608920 -81086834 + HAL1 LINE L1 2287 2397 -110 2110 122 0 7 chr15 4611080 4611406 -81084348 - AluSg SINE Alu 0 310 1 1521 236 29 52 chr15 4613878 4614649 -81081105 + L1MB3 LINE L1 2798 3550 -2596 * 2521 158 31 8 chr15 4614646 4615346 -81080408 + L1M1 LINE L1 4899 5614 -686 5995 204 40 25 chr15 4615402 4617976 -81077778 + L1MB3 LINE L1 3554 6173 -10 908 136 0 0 chr15 4618821 4618953 -81076801 - FLAM_C SINE Alu -11 132 1 2286 178 38 2 chr15 4619522 4619949 -81075805 - L1MB3 LINE L1 -120 6063 5622 554 279 47 12 chr15 4620668 4620840 -81074914 + MIR SINE MIR 37 214 -48 1878 178 67 13 chr15 4621403 4621791 -81073963 - L1MA5 LINE L1 -1 6299 5891 1871 179 68 0 chr15 4623435 4623771 -81071983 - MLT1A1 LTR MaLR -6 359 1 517 280 45 40 chr15 4624524 4624724 -81071030 + MIR SINE MIR 32 232 -30 3606 80 35 8 chr15 4624778 4625266 -81070488 - L1MA2 LINE L1 -2 6302 5802 365 259 0 0 chr15 4625309 4625390 -81070364 + MIR SINE MIR 34 114 -148 227 233 0 33 chr15 4626616 4626676 -81069078 - Charlie8 DNA MER1_type 0 2417 2360 1541 290 36 63 chr15 4626953 4627557 -81068197 + MLT1E LTR MaLR 1 588 -5 1479 236 44 35 chr15 4627610 4628064 -81067690 - MER39 LTR ERV1 0 707 250 207 336 71 18 chr15 4628574 4628687 -81067067 + L3 LINE CR1 618 736 -841 512 297 102 25 chr15 4629029 4629265 -81066489 + MIR SINE MIR 9 262 0 21 0 0 0 chr15 4629271 4629292 -81066462 + AT_rich Low_complexity Low_complexity 1 21 0 270 303 311 8 chr15 4629311 4629443 -81066311 + L3 LINE CR1 1282 1453 -124 625 264 25 0 chr15 4629856 4630015 -81065739 + MIR SINE MIR 28 190 -72 1454 192 17 118 chr15 4630016 4630422 -81065332 - MLT1A1 LTR MaLR 0 365 1 222 219 0 0 chr15 4630436 4630477 -81065277 + CT-rich Low_complexity Low_complexity 2 42 0 1757 200 63 25 chr15 4630727 4631173 -81064581 + MER31B LTR ERV1 1 543 0 22 88 0 0 chr15 4632739 4632796 -81062958 + AT_rich Low_complexity Low_complexity 1 57 0 239 200 178 30 chr15 4632796 4632931 -81062823 + L1MC/D LINE L1 3030 3184 -2962 2666 230 82 26 chr15 4633044 4634163 -81061591 + L1MC/D LINE L1 4399 5587 -772 216 0 0 0 chr15 4634163 4634187 -81061567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2666 230 82 26 chr15 4634187 4634221 -81061533 + L1MC/D LINE L1 5587 5618 -741 4498 246 126 58 chr15 4635440 4635780 -81059974 + L1MDa LINE L1 4 319 -6221 2013 113 10 7 chr15 4635780 4636071 -81059683 - AluSx SINE Alu -20 292 1 4498 246 126 58 chr15 4636071 4638954 -81056800 + L1MDa LINE L1 319 3432 -3108 727 174 0 9 chr15 4638955 4639070 -81056684 + 5S rRNA rRNA 2 115 -6 2245 169 125 5 chr15 4640365 4640773 -81054981 + MSTB2 LTR MaLR 1 457 0 869 260 174 0 chr15 4640948 4641229 -81054525 + MLT1F LTR MaLR 213 542 0 289 276 46 0 chr15 4641280 4641367 -81054387 - L2 LINE L2 -1 3312 3222 764 224 167 5 chr15 4641944 4642136 -81053618 + MER58A DNA MER1_type 2 224 0 2608 195 43 4 chr15 4642559 4643118 -81052636 + LTR69 LTR ERVL 1 581 -7 1839 211 49 0 chr15 4644152 4644560 -81051194 - L1MA6 LINE L1 0 6300 5873 204 254 16 0 chr15 4645135 4645198 -81050556 + (TA)n Simple_repeat Simple_repeat 2 65 0 1172 260 14 33 chr15 4645936 4646302 -81049452 + L1MEc LINE L1 36 394 -6002 * 3085 226 53 40 chr15 4646288 4647366 -81048388 + L1M4 LINE L1 2922 4013 -2133 1128 185 28 5 chr15 4647371 4647587 -81048167 + AluJo SINE Alu 79 299 -13 3975 222 93 18 chr15 4647593 4647623 -81048131 + L1M4 LINE L1 4023 4049 -2097 2278 120 0 0 chr15 4647623 4647931 -81047823 + AluSq SINE Alu 1 308 -5 3975 222 93 18 chr15 4647931 4648849 -81046905 + L1M4 LINE L1 4049 5076 -1070 2268 116 3 0 chr15 4648849 4649159 -81046595 + AluSp SINE Alu 3 313 0 3975 222 93 18 chr15 4649159 4649367 -81046387 + L1M4 LINE L1 5076 5267 -879 456 324 17 12 chr15 4649555 4649728 -81046026 - LTR10B LTR ERV1 0 505 332 1659 283 39 27 chr15 4650054 4650838 -81044916 - HERVI LTR ERV1 -1788 5836 4091 1194 59 13 0 chr15 4651070 4651222 -81044532 - AluY SINE Alu -4 307 154 23 68 0 0 chr15 4653386 4653430 -81042324 + AT_rich Low_complexity Low_complexity 1 44 0 257 135 19 0 chr15 4653448 4653500 -81042254 + (TA)n Simple_repeat Simple_repeat 2 54 0 341 312 127 12 chr15 4654134 4654307 -81041447 - HAL1 LINE L1 -605 1902 1710 842 168 15 0 chr15 4654338 4654475 -81041279 + MER2 DNA MER2_type 1 139 -206 282 242 45 15 chr15 4654470 4654536 -81041218 + MER2 DNA MER2_type 278 345 0 * 1904 171 68 11 chr15 4654567 4654936 -81040818 + MLT1B LTR MaLR 1 390 0 624 232 45 68 chr15 4655935 4656155 -81039599 + MER87 LTR ERV1 174 388 -153 2372 66 13 0 chr15 4656158 4656459 -81039295 - AluY SINE Alu -6 305 1 1276 162 42 37 chr15 4656460 4656701 -81039053 - MLT1D LTR MaLR -263 242 1 230 51 51 0 chr15 4657710 4657749 -81038005 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1812 197 70 12 chr15 4657828 4658173 -81037581 + MLT1A1 LTR MaLR 1 365 0 284 309 62 0 chr15 4659822 4659903 -81035851 + MIR3 SINE MIR 108 193 -15 2182 98 18 0 chr15 4661891 4662176 -81033578 + AluSx SINE Alu 1 290 -22 423 250 9 9 chr15 4662213 4662321 -81033433 + MER3 DNA MER1_type 78 185 -24 387 41 0 0 chr15 4663771 4663820 -81031934 + (TC)n Simple_repeat Simple_repeat 2 50 0 297 0 0 0 chr15 4663819 4663852 -81031902 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2177 152 6 30 chr15 4664649 4665010 -81030744 + THE1A LTR MaLR 4 355 0 468 181 0 0 chr15 4665381 4665453 -81030301 + AluJ/FLAM SINE Alu 2 73 -239 1493 197 100 3 chr15 4865753 4866228 -80829526 + L1MC4 LINE L1 5498 5782 -384 920 229 103 10 chr15 4866033 4866335 -80829419 + L1MB7 LINE L1 5846 6175 -9 * 2233 105 3 0 chr15 4866708 4867002 -80828752 - AluSx SINE Alu -17 295 1 1902 163 0 3 chr15 4867443 4867743 -80828011 + AluSx SINE Alu 1 299 -13 389 314 70 13 chr15 4867794 4868023 -80827731 - MIR SINE MIR 0 262 21 226 292 45 0 chr15 4868010 4868099 -80827655 + MIR3 SINE MIR 94 186 -22 * 2044 102 74 34 chr15 4868680 4869004 -80826750 + MER1B DNA MER1_type 1 337 0 3634 200 56 122 chr15 4869520 4869996 -80825758 + L1M2 LINE L1 2296 2802 -3344 1743 184 14 3 chr15 4869996 4870279 -80825475 - AluJo SINE Alu -20 292 7 3634 200 56 122 chr15 4870279 4870409 -80825345 + L1M2 LINE L1 2802 2939 -3207 2306 114 0 0 chr15 4870409 4870706 -80825048 - AluSg SINE Alu -13 297 1 3634 200 56 122 chr15 4870706 4871596 -80824158 + L1M2 LINE L1 2939 3695 -2451 861 156 4 24 chr15 4871596 4871841 -80823913 + GA-rich Low_complexity Low_complexity 1 240 0 292 141 13 103 chr15 4871841 4871919 -80823835 + L1P LINE L1 3673 3743 -2403 * 6443 20 0 0 chr15 4871917 4872654 -80823100 - L1PA3 LINE L1 -1137 5009 4273 7918 23 0 0 chr15 4872657 4873804 -80821950 + L1PA3 LINE L1 5005 6151 -4 8773 167 17 11 chr15 4873806 4875825 -80819929 + L1M2 LINE L1 3736 5764 -548 1192 211 53 43 chr15 4876038 4876091 -80819663 + L1MEc LINE L1 1925 1976 -4420 1896 132 0 51 chr15 4876091 4876402 -80819352 + AluY SINE Alu 2 296 -15 1192 211 53 43 chr15 4876402 4876746 -80819008 + L1MEc LINE L1 1976 2326 -4070 1491 128 21 4 chr15 4876755 4876989 -80818765 - Tigger5 DNA MER2_type -1 2322 2085 339 219 0 0 chr15 4877008 4877072 -80818682 - Tigger5 DNA MER2_type -2259 64 1 2160 108 10 3 chr15 4877117 4877412 -80818342 + AluSq SINE Alu 1 297 -16 1958 232 80 5 chr15 4877448 4878086 -80817668 + L1MEc LINE L1 2356 3000 -3215 1593 182 29 66 chr15 4878094 4878474 -80817280 - MLT1A2 LTR MaLR -8 366 1 239 180 0 0 chr15 4878474 4878524 -80817230 + L1MEc LINE L1 2996 3045 -3170 624 248 33 26 chr15 4878534 4878687 -80817067 - MER58B DNA MER1_type 0 341 188 6729 232 57 23 chr15 4878711 4880717 -80815037 + L1MEc LINE L1 3050 5123 -1092 2061 132 0 4 chr15 4881338 4881618 -80814136 - AluSx SINE Alu -33 279 1 5889 150 17 21 chr15 4881895 4882933 -80812821 + L1PB3 LINE L1 4125 5166 -988 2106 106 0 14 chr15 4882933 4883217 -80812537 + AluSx SINE Alu 1 280 -32 558 0 0 0 chr15 4883220 4883282 -80812472 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 5889 150 17 21 chr15 4883282 4884276 -80811478 + L1PB3 LINE L1 5168 6152 -2 22 0 0 0 chr15 4886182 4886204 -80809550 + AT_rich Low_complexity Low_complexity 1 22 0 2459 255 97 19 chr15 4886647 4887451 -80808303 - L1M4 LINE L1 -5675 867 1 889 169 20 0 chr15 4888435 4888583 -80807171 - FRAM SINE Alu -25 151 1 2332 109 27 29 chr15 4892899 4893275 -80802479 + THE1C LTR MaLR 1 375 0 369 289 8 16 chr15 4893624 4893745 -80802009 + (CATA)n Simple_repeat Simple_repeat 1 120 0 522 191 0 53 chr15 4893747 4893935 -80801819 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 180 200 0 0 chr15 4893958 4893998 -80801756 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 822 163 0 33 chr15 4896264 4896417 -80799337 + FAM SINE Alu 1 49 0 2093 117 11 0 chr15 4896424 4896731 -80799023 + AluSp SINE Alu 1 310 0 2007 86 7 15 chr15 4897431 4897700 -80798054 - AluSx SINE Alu -7 305 39 1940 151 3 20 chr15 4897713 4898017 -80797737 - AluJo SINE Alu -13 299 1 4511 206 67 14 chr15 4898032 4898995 -80796759 - L1MB4 LINE L1 -1 6179 5268 1862 172 14 0 chr15 4898995 4899291 -80796463 - AluJb SINE Alu -12 300 1 4511 206 67 14 chr15 4899291 4900429 -80795325 - L1MB4 LINE L1 -912 5268 3964 396 285 111 12 chr15 4900661 4900833 -80794921 + MER5A DNA MER1_type 1 189 0 924 271 93 22 chr15 4901364 4901815 -80793939 + LTR33 LTR ERVL 37 519 -2 987 169 94 155 chr15 4902438 4902916 -80792838 + L1MEc LINE L1 1744 2192 -4204 1386 231 41 66 chr15 4903022 4903581 -80792173 + L1MEc LINE L1 2154 2668 -3547 1975 132 0 44 chr15 4905471 4905809 -80789945 - AluSx SINE Alu 0 325 1 616 232 58 0 chr15 4906300 4906455 -80789299 - L1ME3A LINE L1 -228 5942 5779 8123 212 36 37 chr15 4906455 4907856 -80787898 - L1MDa LINE L1 -1829 4815 3403 1925 162 7 76 chr15 4907856 4908094 -80787660 - MLT1B LTR MaLR 0 390 192 2306 112 3 0 chr15 4908094 4908399 -80787355 - AluSg SINE Alu -4 306 1 1925 162 7 76 chr15 4908399 4908579 -80787175 - MLT1B LTR MaLR -198 192 1 8123 212 36 37 chr15 4908579 4909357 -80786397 - L1MDa LINE L1 -3241 3403 2626 277 250 0 0 chr15 4909411 4909471 -80786283 - L1MDa LINE L1 -5833 709 650 258 165 46 9 chr15 4910048 4910157 -80785597 + GA-rich Low_complexity Low_complexity 2 114 0 295 236 76 35 chr15 4910405 4910549 -80785205 + MIR SINE MIR 113 262 0 762 284 25 80 chr15 4911826 4912315 -80783439 + L1ME4a LINE L1 5613 6074 -47 1731 175 3 7 chr15 4913367 4913659 -80782095 - AluJb SINE Alu -21 291 1 1356 180 73 38 chr15 4913849 4914138 -80781616 - AluJo SINE Alu -13 299 1 2403 82 3 31 chr15 4915330 4915649 -80780105 - AluSg SINE Alu 0 310 1 1008 106 35 0 chr15 4916384 4916554 -80779200 + MER20 DNA MER1_type 44 219 0 2865 117 144 14 chr15 4916815 4917377 -80778377 - LTR24C LTR ERV1 0 635 1 852 140 129 0 chr15 4918510 4918681 -80777073 - MER3 DNA MER1_type -16 193 1 2289 116 0 0 chr15 4919177 4919478 -80776276 + AluSx SINE Alu 10 310 -2 269 286 92 0 chr15 4922338 4922436 -80773318 - L2 LINE L2 -5 3308 3202 182 269 167 0 chr15 4924071 4924149 -80771605 + L2 LINE L2 3220 3310 -3 269 258 11 65 chr15 4924171 4924357 -80771397 + (TG)n Simple_repeat Simple_repeat 1 176 0 428 270 51 15 chr15 4926064 4926260 -80769494 - L1MCc LINE L1 -5080 1343 1141 270 301 29 19 chr15 4926545 4926648 -80769106 - L1MCc LINE L1 -5702 720 617 228 188 24 35 chr15 4928866 4928951 -80766803 + CT-rich Low_complexity Low_complexity 3 86 0 385 273 128 14 chr15 4929048 4929325 -80766429 - MER39 LTR ERV1 -4 642 397 29 0 0 0 chr15 4931336 4931365 -80764389 + AT_rich Low_complexity Low_complexity 1 29 0 1707 166 3 14 chr15 4931370 4931659 -80764095 - AluJo SINE Alu -24 288 3 303 269 10 10 chr15 4931711 4931815 -80763939 + MER69 DNA AcHobo 2422 2525 -1 1518 198 106 25 chr15 4932408 4932767 -80762987 - MLT1B LTR MaLR 0 390 3 184 252 15 114 chr15 4933654 4933785 -80761969 + MIR SINE MIR 65 182 -80 433 240 79 104 chr15 4934446 4934800 -80760954 - MER68 LTR ERV1 -150 412 68 246 47 0 70 chr15 4935552 4935595 -80760159 - LTR10C LTR ERV1 -440 151 112 815 195 31 22 chr15 4935896 4936171 -80759583 - L1MC/D LINE L1 -743 5403 5188 243 100 25 0 chr15 4936181 4936221 -80759533 - Alu SINE Alu -262 41 1 2130 130 3 7 chr15 4936221 4936520 -80759234 - AluSx SINE Alu -14 298 1 346 261 109 51 chr15 4936523 4936661 -80759093 - L1MC/D LINE L1 -1015 5131 4986 678 165 0 0 chr15 4936662 4936771 -80758983 - FRAM SINE Alu -5 171 63 2077 161 29 5 chr15 4939032 4939411 -80756343 - MLT1B LTR MaLR 0 390 3 270 252 8 138 chr15 4939923 4939979 -80755775 - MIR SINE MIR -128 134 101 2331 67 3 33 chr15 4939979 4940279 -80755475 - AluY SINE Alu -20 291 1 270 252 8 138 chr15 4940279 4940345 -80755409 - MIR SINE MIR -161 101 28 307 279 73 50 chr15 4940688 4940867 -80754887 + MIR SINE MIR 58 240 -22 2213 125 0 0 chr15 4941726 4942021 -80753733 + AluSg SINE Alu 1 295 -15 1608 59 0 0 chr15 4942955 4943164 -80752590 + AluSg/x SINE Alu 98 306 0 222 314 157 7 chr15 4943355 4943508 -80752246 - MER5B DNA MER1_type 0 178 3 635 237 63 5 chr15 4943536 4943726 -80752028 + L1MA4 LINE L1 6086 6286 -14 4679 265 74 23 chr15 4945576 4947290 -80748464 + L1MEc LINE L1 38 1845 -4551 2403 73 0 13 chr15 4947290 4947591 -80748163 + AluY SINE Alu 1 297 -14 4679 265 74 23 chr15 4947591 4947641 -80748113 + L1MEc LINE L1 1845 1891 -4505 661 209 70 50 chr15 4948235 4948436 -80747318 + ORSL DNA AcHobo 30 234 -41 2376 71 20 3 chr15 4950208 4950504 -80745250 - AluY SINE Alu -8 303 3 2287 226 81 59 chr15 4951046 4952096 -80743658 - L1MC/D LINE L1 -1272 4874 3802 892 235 35 48 chr15 4952090 4952380 -80743374 - L1MC/D LINE L1 -3101 3045 2753 * 396 0 0 0 chr15 4952380 4952424 -80743330 + (TG)n Simple_repeat Simple_repeat 1 44 0 1995 141 0 0 chr15 4952424 4952701 -80743053 - AluSx SINE Alu -33 279 3 892 235 35 48 chr15 4952701 4952784 -80742970 - L1MC/D LINE L1 -3391 2755 2676 4771 59 2 7 chr15 4953353 4953947 -80741807 - LTR10C LTR ERV1 0 591 1 374 212 59 12 chr15 4953989 4954074 -80741680 + L2 LINE L2 3222 3310 -3 2258 81 28 3 chr15 4954376 4954661 -80741093 - AluSg SINE Alu -18 292 1 491 305 53 0 chr15 4955960 4956111 -80739643 - MIR SINE MIR -35 227 69 730 222 116 81 chr15 4956276 4956646 -80739108 + MLT1D LTR MaLR 1 383 -122 186 43 0 0 chr15 4956948 4956971 -80738783 + (AGCTG)n Simple_repeat Simple_repeat 2 24 0 381 305 6 0 chr15 4957241 4957418 -80738336 + (TG)n Simple_repeat Simple_repeat 2 179 0 303 280 5 0 chr15 4957436 4957638 -80738116 + (TG)n Simple_repeat Simple_repeat 1 203 0 776 85 78 8 chr15 4960689 4960818 -80734936 - L1MA9 LINE L1 -382 5930 5793 279 114 0 0 chr15 4960818 4960862 -80734892 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 260 26 13 chr15 4960965 4961196 -80734558 - L1M4 LINE L1 -2823 3323 3090 355 227 57 34 chr15 4961196 4961284 -80734470 + L1M LINE L1 5308 5397 -765 2213 109 0 3 chr15 4961289 4961615 -80734139 + AluSx SINE Alu 1 325 0 226 274 27 14 chr15 4962785 4962858 -80732896 - MER5A DNA MER1_type -34 155 82 308 172 0 17 chr15 4962871 4962929 -80732825 - MLT1I LTR MaLR -7 402 346 3621 250 83 22 chr15 4963235 4964943 -80730811 - L1MEc LINE L1 -2392 3823 2060 369 253 0 0 chr15 4964946 4965029 -80730725 - L1MEc LINE L1 -4371 2025 1943 225 98 59 20 chr15 4965416 4965467 -80730287 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 38 39 0 0 chr15 4965536 4965588 -80730166 + AT_rich Low_complexity Low_complexity 1 52 0 186 71 0 0 chr15 4965588 4965616 -80730138 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 7684 44 14 0 chr15 4965620 4966643 -80729111 - L1PA7 LINE L1 -13 6141 5114 2039 119 0 11 chr15 4966643 4966928 -80728826 - AluSx SINE Alu -11 301 20 357 43 0 0 chr15 4966930 4966977 -80728777 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 195 274 124 66 chr15 4967302 4967543 -80728211 - L2 LINE L2 -820 2494 2240 2331 52 0 0 chr15 4969359 4969628 -80726126 - L1PA5 LINE L1 -3 6151 5883 183 322 69 75 chr15 4970083 4970257 -80725497 - MIR SINE MIR -30 232 60 205 250 73 0 chr15 4971100 4971168 -80724586 - MIR SINE MIR -69 139 67 2268 99 3 0 chr15 4971209 4971503 -80724251 - AluSp SINE Alu -18 295 1 428 143 0 39 chr15 4971798 4971875 -80723879 - AluJ/FLAM SINE Alu -221 91 18 420 20 0 0 chr15 4973409 4973458 -80722296 + (TG)n Simple_repeat Simple_repeat 1 49 0 2652 97 26 3 chr15 4973458 4973810 -80721944 + L1PB1 LINE L1 5792 6151 0 1947 150 6 13 chr15 4974590 4974903 -80720851 + AluSx SINE Alu 2 312 0 2120 127 0 10 chr15 4977890 4978189 -80717565 - AluSx SINE Alu -16 296 1 218 292 14 0 chr15 4978238 4978310 -80717444 + (ATATG)n Simple_repeat Simple_repeat 3 75 0 908 266 117 5 chr15 4978475 4978800 -80716954 - L1MD2 LINE L1 0 6166 5819 2022 133 13 3 chr15 4978804 4979112 -80716642 + AluJb SINE Alu 1 311 -1 528 295 18 26 chr15 4979123 4979350 -80716404 - L1MD2 LINE L1 -455 5711 5487 3794 142 30 2 chr15 4980305 4980891 -80714863 - MER39B LTR ERV1 -3 650 43 3152 111 9 2 chr15 4980891 4981322 -80714432 - MER57B LTR ERV1 0 434 1 3794 142 30 2 chr15 4981322 4981362 -80714392 - MER39B LTR ERV1 -610 43 6 327 172 0 0 chr15 4981536 4981594 -80714160 - MER57B LTR ERV1 -376 58 1 344 48 0 0 chr15 4981594 4981636 -80714118 - MER39B LTR ERV1 -608 45 4 * 837 251 39 39 chr15 4981636 4981935 -80713819 - MER46C DNA MER2_type -39 299 1 266 214 66 88 chr15 4982973 4983155 -80712599 - LTR8A LTR ERV1 -53 674 497 659 89 50 0 chr15 4983289 4983390 -80712364 - AluSp SINE Alu -206 107 2 1651 138 57 40 chr15 4983488 4983786 -80711968 + AluSx SINE Alu 5 307 -5 439 279 44 33 chr15 4983812 4984065 -80711689 + L1MA10 LINE L1 5915 6321 0 2403 232 29 9 chr15 4984837 4985502 -80710252 - L1M4c LINE L1 -3181 3201 2524 381 304 60 36 chr15 4985514 4986002 -80709752 - L1M4c LINE L1 -3947 2437 1990 1113 133 12 6 chr15 4986006 4986179 -80709575 + Tigger2 DNA MER2_type 1 174 -2544 5666 123 13 54 chr15 4986180 4987582 -80708172 + L1PA13 LINE L1 4795 6159 -4 297 68 0 0 chr15 4987662 4987706 -80708048 + (CA)n Simple_repeat Simple_repeat 2 45 0 3397 149 53 0 chr15 4987726 4988289 -80707465 + Tigger2 DNA MER2_type 165 757 -1961 738 99 0 0 chr15 4988343 4988454 -80707300 + Tigger2 DNA MER2_type 2461 2571 -147 1331 168 4 9 chr15 4988455 4988681 -80707073 + AluJb SINE Alu 72 296 -16 930 176 7 0 chr15 4988683 4988836 -80706918 + Tigger2 DNA MER2_type 2561 2714 -4 210 37 0 0 chr15 4988839 4988866 -80706888 + (TG)n Simple_repeat Simple_repeat 2 28 0 1674 255 63 74 chr15 4988866 4989923 -80705831 - L1M4c LINE L1 -4573 1811 766 877 236 31 49 chr15 4989986 4990344 -80705410 - L1M4 LINE L1 -3738 3219 2869 522 211 0 0 chr15 4990330 4990425 -80705329 - L1M4 LINE L1 -5723 1136 1042 * 4491 137 3 13 chr15 4990436 4991124 -80704630 - L1MC1 LINE L1 -17 6316 5636 523 343 53 20 chr15 4992686 4992931 -80702823 + MIR SINE MIR 10 262 0 9002 183 31 2 chr15 4993769 4996189 -80699565 - L1PA15 LINE L1 0 6165 3681 561 68 0 0 chr15 4996189 4996263 -80699491 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 9002 183 31 2 chr15 4996263 4996293 -80699461 - L1PA15 LINE L1 -2484 3681 3653 432 232 20 10 chr15 4996500 4996599 -80699155 + L1MEd LINE L1 654 753 -5366 4876 229 87 50 chr15 4996723 4998245 -80697509 - L1MC4a LINE L1 -1 7807 6229 2030 142 49 30 chr15 4998258 4998624 -80697130 + MSTB1 LTR MaLR 1 373 -59 1243 166 45 14 chr15 4998625 4998848 -80696906 - AluJb SINE Alu -1 311 82 354 88 53 0 chr15 4998848 4998905 -80696849 + MSTB1 LTR MaLR 371 430 -2 2475 279 81 32 chr15 4998910 4999079 -80696675 - L1MC4a LINE L1 -755 5391 5232 2254 110 7 3 chr15 4999079 4999388 -80696366 - AluSg SINE Alu 0 310 1 2475 279 81 32 chr15 4999388 5000997 -80694757 - L1MC4a LINE L1 -914 5232 4296 2286 204 58 49 chr15 5001029 5001583 -80694171 + MER68 LTR ERV1 4 562 0 255 242 8 94 chr15 5001593 5001721 -80694033 - L1P LINE L1 -2082 4064 3948 3788 141 10 7 chr15 5001825 5002421 -80693333 - LTR8A LTR ERV1 -129 598 1 5024 138 65 32 chr15 5002546 5002931 -80692823 - MER4D LTR ERV1 0 903 532 642 24 0 24 chr15 5002931 5003013 -80692741 - L1PA2 LINE L1 0 6155 6076 5024 138 65 32 chr15 5003013 5003501 -80692253 - MER4D LTR ERV1 -371 532 1 312 120 0 0 chr15 5003744 5003794 -80691960 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 2953 216 41 33 chr15 5003923 5004748 -80691006 - L1MB7 LINE L1 0 6682 5851 402 143 11 66 chr15 5007070 5007161 -80688593 + L1ME LINE L1 5374 5459 -703 2273 259 47 29 chr15 5008640 5009503 -80686251 + L1ME3A LINE L1 5089 5971 -199 240 238 48 32 chr15 5009984 5010047 -80685707 + MIR SINE MIR 167 230 -32 245 374 9 9 chr15 5010959 5011066 -80684688 + MIR SINE MIR 25 131 -77 286 124 11 56 chr15 5012550 5012639 -80683115 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 664 180 81 62 chr15 5012652 5012730 -80683024 - L1MB4 LINE L1 -12 6168 6093 1519 200 102 31 chr15 5012730 5013150 -80682604 + LTR7 LTR ERV1 1 450 0 664 180 81 62 chr15 5013150 5013282 -80682472 - L1MB4 LINE L1 -87 6093 5954 1420 233 76 68 chr15 5013283 5014102 -80681652 - L1MB7 LINE L1 -992 5652 620 210 339 64 78 chr15 5014438 5014656 -80681098 + L2 LINE L2 3027 3241 -31 2315 77 10 13 chr15 5014981 5015280 -80680474 + AluSq SINE Alu 1 321 0 187 43 0 0 chr15 5015280 5015303 -80680451 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2736 221 30 25 chr15 5016067 5017352 -80678402 - L1ME1 LINE L1 -273 5893 4601 460 281 0 0 chr15 5017353 5017474 -80678280 + L1ME1 LINE L1 4462 4582 -1564 1760 268 47 38 chr15 5017483 5018017 -80677737 + MLT1E2 LTR MaLR 20 558 -68 622 255 25 12 chr15 5018032 5018275 -80677479 - L1ME1 LINE L1 -2811 3335 3090 2213 211 14 53 chr15 5018287 5018368 -80677386 + L1ME1 LINE L1 5314 5397 -769 2380 117 0 0 chr15 5018368 5018676 -80677078 + AluSx SINE Alu 1 308 -4 2213 211 14 53 chr15 5018676 5019157 -80676597 + L1ME1 LINE L1 5397 5854 -312 1865 90 4 0 chr15 5019157 5019391 -80676363 - AluSp SINE Alu -16 297 63 1296 274 60 49 chr15 5019495 5020491 -80675263 - L1M4 LINE L1 -2238 3908 2902 1995 148 51 21 chr15 5020644 5021017 -80674737 + MSTB1 LTR MaLR 1 384 -48 327 272 158 38 chr15 5021017 5021201 -80674553 - HAL1b LINE L1 -832 516 311 1662 123 8 11 chr15 5021477 5021745 -80674009 - L1MA4 LINE L1 -16 6284 6018 2475 83 0 0 chr15 5022611 5022912 -80672842 - AluSx SINE Alu -11 301 1 241 128 0 0 chr15 5024260 5024307 -80671447 + Alu SINE Alu 261 307 -1 245 276 60 26 chr15 5026043 5026159 -80669595 - L1ME LINE L1 -312 5809 5690 316 263 91 10 chr15 5026365 5026464 -80669290 - LTR33 LTR ERVL -313 208 102 790 342 75 37 chr15 5026851 5027188 -80668566 - ERVL LTR ERVL -462 5302 4979 4208 109 45 5 chr15 5027188 5027767 -80667987 - LTR43 LTR ERV1 0 602 1 790 342 75 37 chr15 5027767 5028187 -80667567 - ERVL LTR ERVL -785 4979 4516 518 231 0 0 chr15 5028354 5028461 -80667293 - MLT1D LTR MaLR -324 181 75 542 222 194 0 chr15 5028461 5028605 -80667149 - MLT1D LTR MaLR 0 505 334 1357 213 94 3 chr15 5028606 5028926 -80666828 - L1MDa LINE L1 -2253 4153 3805 2336 138 36 20 chr15 5029175 5029531 -80666223 - THE1B LTR MaLR -2 362 1 8161 86 15 85 chr15 5029536 5030582 -80665172 - THE1B-int LTR MaLR -6 1574 634 2314 97 0 0 chr15 5030582 5030881 -80664873 - AluY SINE Alu -12 299 1 8161 86 15 85 chr15 5030881 5031132 -80664622 - THE1B-int LTR MaLR -946 634 367 2964 66 8 0 chr15 5032128 5032506 -80663248 - THE1B-int LTR MaLR -1199 381 1 401 80 0 0 chr15 5032506 5032556 -80663198 - THE1B LTR MaLR 0 364 315 595 237 10 42 chr15 5032557 5032965 -80662789 + BSR/Beta Satellite Satellite 1 394 -60 598 199 35 59 chr15 5032984 5033201 -80662553 + BSR/Beta Satellite Satellite 1 211 -38 5739 93 94 29 chr15 5033597 5034683 -80661071 - MER11A LTR ERVK -5 1261 1 3396 271 28 9 chr15 5034690 5036034 -80659720 - L1MDa LINE L1 -2619 3787 2363 1138 227 97 25 chr15 5036036 5036357 -80659397 - MER2 DNA MER2_type -1 344 1 723 233 84 32 chr15 5036359 5036608 -80659146 - L1MDa LINE L1 -4044 2362 2101 2739 201 51 48 chr15 5036614 5036742 -80659012 - L1MDa LINE L1 -4366 2040 1914 2320 101 3 0 chr15 5036742 5037039 -80658715 - AluSc SINE Alu -11 298 1 2739 201 51 48 chr15 5037039 5037748 -80658006 - L1MDa LINE L1 -4492 1914 1200 328 171 48 4 chr15 5037756 5037838 -80657916 + MLT1A1 LTR MaLR 227 301 -73 189 258 32 65 chr15 5037860 5037953 -80657801 - MIR SINE MIR -77 131 42 212 323 20 40 chr15 5038727 5038826 -80656928 + L2 LINE L2 3019 3115 -157 185 179 0 54 chr15 5038982 5039038 -80656716 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 2770 210 74 7 chr15 5039129 5039734 -80656020 - L1MDa LINE L1 -5195 1214 569 524 147 0 74 chr15 5040091 5040186 -80655568 - THE1B LTR MaLR 0 364 277 902 217 82 25 chr15 5040423 5040522 -80655232 - L1MDa LINE L1 -6143 266 174 2524 87 25 33 chr15 5040522 5040889 -80654865 - THE1B LTR MaLR 0 364 1 902 217 82 25 chr15 5040889 5041033 -80654721 - L1MDa LINE L1 -6235 174 9 570 260 104 89 chr15 5041522 5042025 -80653729 + L2 LINE L2 2758 3291 -22 1740 169 23 10 chr15 5043364 5043666 -80652088 - AluJb SINE Alu -5 307 2 22 35 0 0 chr15 5043779 5043808 -80651946 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 5044277 5044298 -80651456 + AT_rich Low_complexity Low_complexity 1 21 0 517 268 100 52 chr15 5044352 5044811 -80650943 + L1ME LINE L1 3 483 -5587 1025 274 31 26 chr15 5045063 5045515 -80650239 + L1ME LINE L1 547 1000 -5070 2231 171 30 2 chr15 5045573 5045999 -80649755 + L1P LINE L1 2817 3254 -2892 1471 292 36 8 chr15 5096530 5097115 -80598639 - L1M4 LINE L1 -1418 4728 4128 3550 225 130 27 chr15 5097127 5098789 -80596965 - L1MDb LINE L1 -4541 1865 7 633 269 42 23 chr15 5099706 5099922 -80595832 - MER92C LTR ERV1 -27 527 308 2010 115 0 17 chr15 5099931 5100252 -80595502 - AluSg SINE Alu 0 316 1 4899 145 56 18 chr15 5100270 5100835 -80594919 - MER4D LTR ERV1 0 903 292 3425 133 27 15 chr15 5100835 5101382 -80594372 + MER41C LTR ERV1 1 554 0 4899 145 56 18 chr15 5101382 5101686 -80594068 - MER4D LTR ERV1 -611 292 1 305 263 26 53 chr15 5101686 5101782 -80593972 - MER92C LTR ERV1 -232 322 230 190 258 45 61 chr15 5105118 5105184 -80590570 + MIR SINE MIR 18 82 -180 188 243 114 0 chr15 5105857 5105927 -80589827 + MER5A DNA MER1_type 28 105 -84 242 248 142 64 chr15 5106469 5106650 -80589104 + Charlie2 DNA MER1_type 2591 2793 -69 2040 131 0 0 chr15 5106650 5106947 -80588807 + AluSx SINE Alu 1 297 -15 242 248 142 64 chr15 5106947 5106983 -80588771 + Charlie2 DNA MER1_type 2793 2825 -37 323 220 22 7 chr15 5107199 5107296 -80588458 - LTR30 LTR ERV1 -102 677 552 1690 116 141 48 chr15 5107299 5107700 -80588054 - pTR5 LTR ERV1 -436 2002 1 2472 104 52 0 chr15 5107700 5108047 -80587707 - HERV9 LTR ERV1 0 8399 8035 849 198 119 18 chr15 5108075 5108302 -80587452 - LTR32 LTR ERVL -51 420 171 589 179 71 50 chr15 5108611 5108751 -80587003 - LTR32 LTR ERVL -286 185 43 * 590 215 87 0 chr15 5108749 5108944 -80586810 + Charlie5 DNA MER1_type 2378 2589 -23 3985 126 5 44 chr15 5109011 5109289 -80586465 + MER41B LTR ERV1 1 288 -347 4384 100 28 15 chr15 5109289 5109941 -80585813 - PABL_A LTR ERV1 0 660 1 3985 126 5 44 chr15 5109941 5110322 -80585432 + MER41B LTR ERV1 288 634 -1 563 265 45 54 chr15 5110353 5110576 -80585178 - MER58A DNA MER1_type -3 221 1 271 248 8 8 chr15 5110852 5110969 -80584785 + CT-rich Low_complexity Low_complexity 1 117 0 205 155 35 0 chr15 5111002 5111060 -80584694 + CT-rich Low_complexity Low_complexity 1 60 0 934 221 13 32 chr15 5111504 5111865 -80583889 - L1M LINE L1 -743 5403 5076 1040 187 21 0 chr15 5111988 5112187 -80583567 + L1PB4 LINE L1 5743 5949 -207 490 222 88 107 chr15 5112189 5112530 -80583224 - LTR58 LTR ERV1 0 670 350 316 224 90 0 chr15 5112728 5112795 -80582959 - LTR35 LTR ERV1 -543 75 3 1188 141 50 0 chr15 5112795 5112994 -80582760 + L1PB4 LINE L1 5948 6156 0 1974 234 64 84 chr15 5112996 5113056 -80582698 - L1MDa LINE L1 -1241 5299 5239 606 245 99 0 chr15 5113056 5113207 -80582547 + FAM SINE Alu 2 167 -8 1974 234 64 84 chr15 5113207 5114058 -80581696 - L1MDa LINE L1 -1301 5239 4407 2292 235 42 82 chr15 5114063 5114974 -80580780 - L1MDa LINE L1 -2450 4090 3261 185 32 0 65 chr15 5114974 5115005 -80580749 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 2292 235 42 82 chr15 5115005 5115577 -80580177 - L1MDa LINE L1 -3279 3261 2668 4059 188 92 11 chr15 5115590 5116587 -80579167 - L1MDa LINE L1 -4384 2156 1079 1461 232 118 25 chr15 5116586 5117060 -80578694 - L1MDa LINE L1 -6016 524 7 * 2296 115 0 10 chr15 5117548 5117860 -80577894 - AluSq SINE Alu -1 312 4 201 175 0 0 chr15 5118586 5118626 -80577128 + CT-rich Low_complexity Low_complexity 2 41 0 1009 257 113 22 chr15 5118642 5119878 -80575876 + L1ME3A LINE L1 4696 6152 -18 465 255 9 9 chr15 5119901 5120007 -80575747 + MER58A DNA MER1_type 37 142 0 300 262 12 12 chr15 5120089 5120173 -80575581 + (TG)n Simple_repeat Simple_repeat 2 85 0 203 276 10 0 chr15 5120186 5120284 -80575470 + (TATG)n Simple_repeat Simple_repeat 4 102 0 201 175 0 0 chr15 5120378 5120418 -80575336 + (TG)n Simple_repeat Simple_repeat 1 40 0 353 359 6 6 chr15 5120430 5120586 -80575168 + (TG)n Simple_repeat Simple_repeat 2 157 0 5236 211 58 27 chr15 5121248 5122514 -80573240 - L1MC3 LINE L1 -169 7616 6312 280 229 43 0 chr15 5122768 5122838 -80572916 - MIR SINE MIR -70 192 120 467 205 188 0 chr15 5122880 5122992 -80572762 - LTR40b LTR ERVL -18 444 312 900 237 34 17 chr15 5123018 5123254 -80572500 - LTR40b LTR ERVL -222 240 1 2221 110 3 0 chr15 5123544 5123834 -80571920 - AluSx SINE Alu -16 296 6 3739 133 38 0 chr15 5124157 5124736 -80571018 - LTR26 LTR ERV1 0 603 3 2345 94 3 7 chr15 5125787 5126096 -80569658 - AluSp SINE Alu -5 308 1 438 279 75 30 chr15 5126347 5126548 -80569206 - L1ME LINE L1 -481 5640 5431 582 60 0 0 chr15 5126980 5127063 -80568691 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1797 147 3 18 chr15 5127064 5127350 -80568404 - AluSx SINE Alu -30 282 1 280 289 12 35 chr15 5127946 5128119 -80567635 + (GGGTG)n Simple_repeat Simple_repeat 2 170 0 1262 187 14 28 chr15 5128292 5128581 -80567173 + L1MA4 LINE L1 6009 6293 -7 237 221 0 0 chr15 5129039 5129107 -80566647 + (TG)n Simple_repeat Simple_repeat 1 68 0 248 263 0 0 chr15 5130671 5130747 -80565007 - MIR SINE MIR -110 152 77 6587 164 19 11 chr15 5130964 5133180 -80562574 - L1PB2 LINE L1 0 6151 3920 249 309 12 0 chr15 5133985 5134066 -80561688 - L3 LINE CR1 -150 1427 1346 182 266 0 31 chr15 5137621 5137685 -80558069 + L2 LINE L2 3111 3172 -141 189 0 0 0 chr15 5137853 5137874 -80557880 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 3681 217 52 22 chr15 5138015 5139362 -80556392 - L1M4 LINE L1 -2427 3955 2387 1950 95 4 0 chr15 5139362 5139614 -80556140 - AluSq SINE Alu 0 313 61 3681 217 52 22 chr15 5139614 5139974 -80555780 - L1M4 LINE L1 -3995 2387 2039 2135 241 88 60 chr15 5139988 5140172 -80555582 - L1M4 LINE L1 -4966 1314 1137 1421 151 12 8 chr15 5140172 5140424 -80555330 - L1MB3 LINE L1 0 6183 5931 2135 241 88 60 chr15 5140424 5141031 -80554723 - L1M4 LINE L1 -5143 1137 548 362 69 17 0 chr15 5141031 5141089 -80554665 + (TG)n Simple_repeat Simple_repeat 2 60 0 2135 241 88 60 chr15 5141089 5141431 -80554323 - L1M4 LINE L1 -5732 548 104 1519 210 92 16 chr15 5141431 5141864 -80553890 + MLT1C LTR MaLR 2 467 0 2135 241 88 60 chr15 5141864 5141966 -80553788 - L1M4 LINE L1 -6176 104 6 331 306 24 16 chr15 5141977 5142101 -80553653 + L2 LINE L2 3184 3308 -5 308 176 30 5 chr15 5143617 5143698 -80552056 - MLT1H LTR MaLR -385 164 41 7892 19 2 0 chr15 5144180 5145329 -80550425 - L1PA2 LINE L1 0 6155 5004 2042 30 0 0 chr15 5145329 5145565 -80550189 + L1PA2 LINE L1 4778 5013 -1133 210 319 103 36 chr15 5145764 5145932 -80549822 + MIR SINE MIR 8 188 -58 944 199 0 6 chr15 5147924 5148105 -80547649 - L1MB3 LINE L1 -7 6176 5997 284 293 30 10 chr15 5151681 5151780 -80543974 - L1ME4a LINE L1 -57 6064 5964 521 307 164 17 chr15 5151824 5152355 -80543399 - L1ME4a LINE L1 -226 5895 5287 2399 213 59 0 chr15 5152517 5153023 -80542731 - L1MD1 LINE L1 0 6242 5707 1232 237 26 66 chr15 5153030 5153532 -80542222 - L1ME4a LINE L1 -919 5227 4746 250 286 87 29 chr15 5153633 5154150 -80541604 - L1ME4a LINE L1 -2794 3352 2806 367 336 69 30 chr15 5154198 5154531 -80541223 - L1ME4a LINE L1 -3461 2685 2340 307 278 61 51 chr15 5155174 5155469 -80540285 - HAL1b LINE L1 -745 603 306 195 42 0 0 chr15 5156142 5156166 -80539588 + (T)n Simple_repeat Simple_repeat 1 24 0 279 133 13 40 chr15 5157599 5157674 -80538080 + A-rich Low_complexity Low_complexity 3 75 0 1134 138 37 0 chr15 5158166 5158354 -80537400 - L1M3 LINE L1 -359 5812 5618 7342 223 64 47 chr15 5158356 5159981 -80535773 - L1M3 LINE L1 -725 5441 3844 2214 98 41 0 chr15 5159981 5160276 -80535478 - AluSc SINE Alu -1 308 2 7342 223 64 47 chr15 5160276 5160587 -80535167 - L1M3 LINE L1 -2322 3844 3540 1802 179 3 10 chr15 5160587 5160877 -80534877 - AluJb SINE Alu -24 288 1 7342 223 64 47 chr15 5160877 5161565 -80534189 - L1M3 LINE L1 -2626 3540 2777 400 278 129 72 chr15 5161568 5161799 -80533955 + L2 LINE L2 2776 2992 -321 2080 102 0 0 chr15 5161799 5162065 -80533689 - AluSx SINE Alu -14 298 33 400 278 129 72 chr15 5162065 5162349 -80533405 + L2 LINE L2 2992 3313 0 187 301 64 55 chr15 5165966 5166185 -80529569 - L2 LINE L2 -711 2603 2383 23 0 0 0 chr15 5168131 5168154 -80527600 + AT_rich Low_complexity Low_complexity 1 23 0 232 190 35 0 chr15 5169265 5169323 -80526431 + GA-rich Low_complexity Low_complexity 3 62 0 225 154 0 0 chr15 5169324 5169363 -80526391 + A-rich Low_complexity Low_complexity 4 42 0 1041 268 77 18 chr15 5169908 5170367 -80525387 - L1ME1 LINE L1 -22 6144 5663 23 0 0 0 chr15 5170442 5170465 -80525289 + AT_rich Low_complexity Low_complexity 1 23 0 1419 188 0 0 chr15 5170468 5170713 -80525041 + AluJo SINE Alu 1 245 -67 245 230 50 30 chr15 5171104 5171219 -80524535 - MLT1H LTR MaLR 0 590 437 237 258 52 52 chr15 5171392 5171489 -80524265 - MLT1G1 LTR MaLR -498 97 1 292 212 0 15 chr15 5171537 5171603 -80524151 + MLT1K LTR MaLR 524 588 0 2609 241 35 52 chr15 5172042 5172788 -80522966 - MER21B LTR ERV1 -112 751 19 1795 119 60 11 chr15 5173621 5173906 -80521848 + AluSx SINE Alu 1 299 -13 2133 94 0 0 chr15 5175433 5175720 -80520034 - AluSc SINE Alu -8 301 15 312 304 64 41 chr15 5176106 5176326 -80519428 - L1MEd LINE L1 -2884 3245 3021 235 258 88 25 chr15 5176616 5176775 -80518979 - L1M4 LINE L1 -1437 4709 4541 282 294 178 33 chr15 5176804 5176984 -80518770 - ERVL LTR ERVL -3174 2590 2385 227 290 21 43 chr15 5177253 5177346 -80518408 - LTR67 LTR ERVL -389 168 78 303 248 53 60 chr15 5177388 5177521 -80518233 - L1MEd LINE L1 -5031 1088 957 322 268 192 56 chr15 5180296 5180361 -80515393 + MIR SINE MIR 8 63 -199 216 0 0 0 chr15 5180361 5180385 -80515369 + (TG)n Simple_repeat Simple_repeat 1 24 0 322 268 192 56 chr15 5180385 5180517 -80515237 + MIR SINE MIR 63 232 -30 32 43 0 0 chr15 5182088 5182134 -80513620 + AT_rich Low_complexity Low_complexity 1 46 0 23 88 0 0 chr15 5182181 5182215 -80513539 + AT_rich Low_complexity Low_complexity 1 34 0 1411 216 126 10 chr15 5182649 5183707 -80512047 - L1ME1 LINE L1 -29 6137 4853 6853 259 82 41 chr15 5183909 5187346 -80508408 + L1M4c LINE L1 1515 5194 -1188 2746 207 23 16 chr15 5187352 5187966 -80507788 - L1MB5 LINE L1 -213 5961 5344 1047 180 0 0 chr15 5187963 5188157 -80507597 - L1M4 LINE L1 -361 5813 5620 * 1642 269 93 22 chr15 5188155 5189411 -80506343 - L1MCc LINE L1 -4762 2179 830 429 342 66 35 chr15 5189529 5190012 -80505742 - L1MCc LINE L1 -5886 537 40 209 275 208 13 chr15 5190473 5190622 -80505132 + L2 LINE L2 3135 3312 -1 346 305 23 23 chr15 5191356 5191487 -80504267 + L2 LINE L2 3182 3312 -1 263 297 27 63 chr15 5191492 5191603 -80504151 + MIR3 SINE MIR 96 202 -6 327 340 149 18 chr15 5192019 5192348 -80503406 + L3 LINE CR1 1103 1474 -103 382 215 68 61 chr15 5192681 5192844 -80502910 - MER103 DNA DNA -2 164 1 718 127 25 0 chr15 5193382 5193500 -80502254 - L1MB1 LINE L1 0 6168 6048 2848 221 18 15 chr15 5193500 5194305 -80501449 + L1M4c LINE L1 2244 3058 -3324 274 305 78 39 chr15 5194394 5194522 -80501232 + MIR SINE MIR 112 244 -18 239 265 12 12 chr15 5197035 5197118 -80498636 + GA-rich Low_complexity Low_complexity 1 83 0 1381 217 95 0 chr15 5197435 5197781 -80497973 + MLT1B LTR MaLR 1 379 -11 402 39 0 0 chr15 5198290 5198342 -80497412 + (CA)n Simple_repeat Simple_repeat 2 53 0 1668 181 28 39 chr15 5198424 5198811 -80496943 - MLT1B LTR MaLR -7 383 1 668 243 64 40 chr15 5199679 5199881 -80495873 + MIR SINE MIR 56 262 0 2217 92 7 3 chr15 5200537 5200843 -80494911 - AluSc SINE Alu -2 307 1 189 154 0 0 chr15 5201064 5201103 -80494651 + (TAG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr15 5201997 5202018 -80493736 + AT_rich Low_complexity Low_complexity 1 21 0 194 88 0 29 chr15 5202256 5202290 -80493464 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 881 173 0 14 chr15 5202292 5202661 -80493093 + GA-rich Low_complexity Low_complexity 1 363 0 1056 214 97 35 chr15 5203786 5204076 -80491678 + MER92B LTR ERV1 1 308 -328 876 197 25 25 chr15 5204144 5204347 -80491407 + MER92B LTR ERV1 434 636 0 248 118 0 171 chr15 5205364 5205440 -80490314 - LTR39 LTR ERV1 -720 63 1 913 96 0 7 chr15 5205828 5205963 -80489791 - L1PB1 LINE L1 0 6151 6018 1434 176 32 22 chr15 5206769 5207082 -80488672 - LTR23 LTR ERV1 0 437 122 194 294 120 11 chr15 5207676 5207768 -80487986 + MIR SINE MIR 31 132 -130 1547 135 52 11 chr15 5208941 5209208 -80486546 + AluSx SINE Alu 17 294 -18 517 273 87 6 chr15 5209349 5209510 -80486244 - MIR SINE MIR -41 221 48 311 288 102 34 chr15 5209593 5209770 -80485984 + MIR SINE MIR 61 249 -13 189 121 69 138 chr15 5211431 5211489 -80484265 + L2 LINE L2 2314 2367 -947 218 173 58 58 chr15 5212739 5212791 -80482963 + MIR SINE MIR 23 74 -134 2365 70 0 13 chr15 5213328 5213642 -80482112 - AluY SINE Alu -1 310 1 201 342 75 20 chr15 5213841 5214136 -80481618 + L2 LINE L2 865 1263 -2051 196 267 33 17 chr15 5214507 5214567 -80481187 + L2 LINE L2 1377 1437 -1877 184 282 39 0 chr15 5214667 5214745 -80481009 + L2 LINE L2 1610 1690 -1624 246 296 12 0 chr15 5215642 5215723 -80480031 + L2 LINE L2 2813 2894 -419 3045 181 8 2 chr15 5215726 5216262 -80479492 + L1PA16 LINE L1 5617 6155 -11 302 384 23 9 chr15 5216395 5216614 -80479140 + HERV16 LTR ERVL 1258 1479 -3517 691 325 62 19 chr15 5216748 5217167 -80478587 + HERV16 LTR ERVL 1785 2221 -3543 1345 331 41 20 chr15 5217250 5217909 -80477845 + HERV16 LTR ERVL 2930 3602 -2162 295 315 45 0 chr15 5220726 5220815 -80474939 + MIR3 SINE MIR 111 203 -5 644 190 22 0 chr15 5221313 5221450 -80474304 - L1MA10 LINE L1 0 6334 6195 788 242 41 0 chr15 5221460 5221654 -80474100 - L1M4 LINE L1 -538 5636 5435 2300 151 12 24 chr15 5221654 5222065 -80473689 - L1MB3 LINE L1 -1 6182 5777 180 357 108 8 chr15 5222268 5222397 -80473357 + L2 LINE L2 3127 3268 -4 2487 90 0 0 chr15 5223186 5223498 -80472256 + AluSx SINE Alu 1 312 0 1348 285 81 37 chr15 5224158 5224199 -80471555 - L1ME2 LINE L1 -195 5903 5865 2289 47 54 0 chr15 5224199 5224477 -80471277 - AluY SINE Alu -18 293 1 1348 285 81 37 chr15 5224477 5225116 -80470638 - L1ME2 LINE L1 -233 5865 5193 1484 276 161 29 chr15 5225123 5226173 -80469581 - L1ME2 LINE L1 -942 5138 3950 243 225 75 38 chr15 5226617 5226697 -80469057 - L1ME2 LINE L1 -5984 86 4 25 31 0 0 chr15 5226744 5226776 -80468978 + AT_rich Low_complexity Low_complexity 1 32 0 623 235 31 0 chr15 5226804 5226966 -80468788 - L1MA8 LINE L1 0 6291 6125 * 3331 230 24 25 chr15 5226965 5227168 -80468586 - L1M1 LINE L1 -4499 3066 2864 205 0 114 0 chr15 5227168 5227203 -80468551 + T-rich Low_complexity Low_complexity 2 40 0 3331 230 24 25 chr15 5227203 5228121 -80467633 - L1M1 LINE L1 -4701 2864 2019 2309 238 26 42 chr15 5228122 5228736 -80467018 - L1M1 LINE L1 -6419 1070 467 2005 135 28 0 chr15 5228762 5229051 -80466703 - AluSg SINE Alu -13 297 1 34 55 0 0 chr15 5229055 5229110 -80466644 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr15 5229190 5229216 -80466538 + AT_rich Low_complexity Low_complexity 1 26 0 272 314 58 0 chr15 5229216 5229302 -80466452 - L2 LINE L2 -10 3303 3213 301 315 16 8 chr15 5231882 5232009 -80463745 - MLT1L LTR MaLR -5 610 483 1672 242 55 21 chr15 5232128 5232152 -80463602 + MER21B LTR ERV1 1 23 -840 414 0 0 0 chr15 5232152 5232198 -80463556 + (TA)n Simple_repeat Simple_repeat 2 47 0 1672 242 55 21 chr15 5232198 5232595 -80463159 + MER21B LTR ERV1 23 436 -427 1496 201 64 38 chr15 5232598 5233017 -80462737 + MER21B LTR ERV1 376 805 -58 238 200 0 0 chr15 5233159 5233204 -80462550 + MLT1D LTR MaLR 2 46 -459 279 243 27 10 chr15 5233332 5233428 -80462326 + MLT1D LTR MaLR 317 394 -111 228 200 0 0 chr15 5233439 5233479 -80462275 + MLT1D LTR MaLR 587 626 0 1686 227 107 71 chr15 5233482 5234102 -80461652 + MLT1D-int LTR MaLR 3 644 -727 1823 263 56 68 chr15 5234265 5234945 -80460809 + MLT1D-int LTR MaLR 692 1363 -8 578 189 9 0 chr15 5234967 5235073 -80460681 + MLT1D LTR MaLR 23 129 -376 249 310 26 9 chr15 5236032 5236145 -80459609 - MLT1J LTR MaLR -8 503 389 303 180 0 0 chr15 5236152 5236231 -80459523 - L1PA8A LINE L1 0 6131 6068 259 324 43 7 chr15 5236294 5236433 -80459321 - MLT1J LTR MaLR -314 197 54 2131 112 0 3 chr15 5236587 5236916 -80458838 - AluSx SINE Alu 0 328 1 2194 118 30 0 chr15 5237332 5237636 -80458118 - AluSq SINE Alu 0 313 1 1437 177 20 96 chr15 5238362 5238769 -80456985 + MLT1B LTR MaLR 8 383 -7 326 316 73 9 chr15 5239599 5239788 -80455966 - L2 LINE L2 -3 3310 3104 2103 132 6 3 chr15 5239788 5240099 -80455655 + AluSx SINE Alu 1 312 0 326 316 73 9 chr15 5240099 5240127 -80455627 - L2 LINE L2 -209 3104 3079 755 137 17 23 chr15 5240131 5240306 -80455448 + GA-rich Low_complexity Low_complexity 4 177 0 21 0 0 0 chr15 5241155 5241176 -80454578 + AT_rich Low_complexity Low_complexity 1 21 0 806 204 7 0 chr15 5241567 5241709 -80454045 - AluJb SINE Alu -34 278 136 540 277 26 0 chr15 5242099 5242114 -80453640 - L1MA10 LINE L1 0 6334 6320 324 249 175 35 chr15 5242114 5242368 -80453386 - L1ME2 LINE L1 -9 6155 5844 198 192 0 0 chr15 5242368 5242420 -80453334 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5242441 5242475 -80453279 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 31 44 0 0 chr15 5242520 5242565 -80453189 + AT_rich Low_complexity Low_complexity 1 45 0 373 224 96 8 chr15 5242649 5242774 -80452980 - L1ME2 LINE L1 -360 5806 5671 376 182 0 0 chr15 5242776 5242842 -80452912 + MSTC LTR MaLR 3 68 -360 971 235 41 26 chr15 5242980 5243248 -80452506 + MSTC LTR MaLR 157 428 0 390 158 162 77 chr15 5243248 5243407 -80452347 - L1ME2 LINE L1 -491 5675 5508 1016 218 46 46 chr15 5243434 5243737 -80452017 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5243891 5243953 -80451801 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 3990 245 50 41 chr15 5245252 5246721 -80449033 + L1M4 LINE L1 2920 4402 -1744 2540 251 67 47 chr15 5246909 5248041 -80447713 + L1M4 LINE L1 3382 4536 -1610 991 273 50 14 chr15 5248019 5248382 -80447372 + L1MD2 LINE L1 5974 6349 -10 * 366 245 57 0 chr15 5249057 5249163 -80446591 - MLT1J LTR MaLR -342 169 58 299 231 74 65 chr15 5249455 5249492 -80446262 + MER5A DNA MER1_type 80 115 -74 3751 121 24 121 chr15 5249492 5250252 -80445502 - LTR12 LTR ERV1 0 688 3 299 231 74 65 chr15 5250252 5250322 -80445432 + MER5A DNA MER1_type 115 188 -1 300 340 26 26 chr15 5250501 5250657 -80445097 + L2 LINE L2 3116 3271 -1 1320 231 137 70 chr15 5250872 5251457 -80444297 - MLT1E2 LTR MaLR -2 624 1 1302 230 40 162 chr15 5251457 5252227 -80443527 - MLT1E2-int LTR MaLR 0 1371 696 2314 243 26 3 chr15 5252433 5253005 -80442749 - MLT1E2-int LTR MaLR -781 590 6 992 287 94 3 chr15 5253024 5253310 -80442444 - MLT1E2 LTR MaLR 0 626 315 810 193 37 32 chr15 5253290 5253477 -80442277 - MLT1E2 LTR MaLR -438 188 1 * 1628 290 55 70 chr15 5253511 5254448 -80441306 + L1M4 LINE L1 -260 662 -5618 673 94 10 10 chr15 5254448 5254544 -80441210 - MSTA LTR MaLR 0 428 333 450 68 122 40 chr15 5254550 5254624 -80441130 - THE1C LTR MaLR -295 80 1 2215 199 64 42 chr15 5254624 5255801 -80439953 + L1M4 LINE L1 658 2103 -4281 243 0 0 0 chr15 5257032 5257059 -80438695 + (T)n Simple_repeat Simple_repeat 1 27 0 663 280 125 11 chr15 5257212 5257491 -80438263 + L1ME3A LINE L1 5661 5971 -199 659 191 64 0 chr15 5258025 5258166 -80437588 - L1MB3 LINE L1 -7 6176 6027 21 0 0 0 chr15 5258602 5258623 -80437131 + AT_rich Low_complexity Low_complexity 1 21 0 2028 112 97 9 chr15 5259441 5259780 -80435974 - THE1C LTR MaLR -3 372 4 215 0 0 62 chr15 5259803 5259835 -80435919 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 181 264 97 0 chr15 5259889 5259961 -80435793 - MIR SINE MIR -77 185 107 188 268 0 0 chr15 5260776 5260817 -80434937 + MIR SINE MIR 216 256 -6 450 265 74 37 chr15 5261254 5261469 -80434285 + L1ME LINE L1 5532 5754 -367 3837 193 60 9 chr15 5261612 5262484 -80433270 + L1MA4A LINE L1 1 916 -5933 5957 150 28 25 chr15 5262484 5263827 -80431927 + L1MA4A LINE L1 5649 7005 0 207 279 124 90 chr15 5263996 5264197 -80431557 - L3 LINE CR1 -58 1519 1312 2023 174 61 30 chr15 5264871 5265278 -80430476 - MSTB LTR MaLR 0 426 7 464 304 34 14 chr15 5266570 5266718 -80429036 - L2 LINE L2 -1 3312 3162 217 145 32 0 chr15 5266764 5266826 -80428928 + (TA)n Simple_repeat Simple_repeat 2 65 0 424 213 40 29 chr15 5267726 5267900 -80427854 + (TG)n Simple_repeat Simple_repeat 1 176 0 308 152 70 13 chr15 5267941 5268099 -80427655 + (TG)n Simple_repeat Simple_repeat 1 167 0 3490 106 32 4 chr15 5268975 5269474 -80426280 - LTR10D LTR ERV1 0 513 1 1576 130 13 4 chr15 5269568 5269806 -80425948 - MSTA LTR MaLR 0 428 189 1170 96 0 24 chr15 5269808 5269974 -80425780 - AluSp SINE Alu -14 299 138 1293 132 10 5 chr15 5269975 5270172 -80425582 - MSTA LTR MaLR -230 198 1 * 2171 140 79 25 chr15 5270172 5270561 -80425193 - MSTC LTR MaLR -18 410 1 1362 214 60 3 chr15 5270586 5270885 -80424869 - MER58B DNA MER1_type 0 341 26 355 296 71 33 chr15 5271843 5272083 -80423671 + MER34B LTR ERV1 317 565 0 303 293 72 83 chr15 5274879 5275241 -80420513 - MLT1I LTR MaLR -2 407 50 450 284 14 27 chr15 5275439 5275587 -80420167 + MIR SINE MIR 63 208 -54 247 374 71 13 chr15 5276120 5276275 -80419479 - L2 LINE L2 0 3272 3109 549 200 0 10 chr15 5276294 5276394 -80419360 + MLT1A1 LTR MaLR 267 365 0 1300 194 145 17 chr15 5277374 5277959 -80417795 - LTR48 LTR ERV1 0 644 1 3173 128 41 41 chr15 5278889 5279497 -80416257 - MER4B LTR ERV1 0 779 1 2701 235 31 10 chr15 5280390 5280994 -80414760 + MER82 DNA MER2_type 26 642 -11 1072 213 39 67 chr15 5281048 5281264 -80414490 - MLT1A1 LTR MaLR -18 347 143 780 162 0 28 chr15 5281264 5281406 -80414348 + L1PA10 LINE L1 6025 6162 -6 1072 213 39 67 chr15 5281406 5281546 -80414208 - MLT1A1 LTR MaLR -222 143 1 302 212 40 22 chr15 5281893 5281986 -80413768 + MIR SINE MIR 63 158 -58 788 243 26 13 chr15 5281997 5282223 -80413531 - MER92B LTR ERV1 -15 621 393 955 196 174 42 chr15 5282261 5282526 -80413228 - MER92B LTR ERV1 -336 300 1 212 300 80 10 chr15 5282527 5282627 -80413127 + MIR SINE MIR 156 262 0 1121 169 0 5 chr15 5283077 5283266 -80412488 + AluJo SINE Alu 86 273 -39 327 234 0 0 chr15 5283306 5283370 -80412384 + L1MC4 LINE L1 6640 6703 -1339 524 234 85 21 chr15 5284531 5284672 -80411082 + MIR SINE MIR 107 256 -6 1009 275 66 22 chr15 5285063 5285470 -80410284 + LTR37A LTR ERV1 1 425 -1 1313 203 14 10 chr15 5287933 5288228 -80407526 - L1MA5 LINE L1 0 6300 6005 1600 180 35 38 chr15 5289358 5289724 -80406030 - MLT1A1 LTR MaLR 0 365 1 479 313 82 5 chr15 5290007 5290215 -80405539 - MER58A DNA MER1_type 0 224 1 1743 174 0 7 chr15 5290240 5290538 -80405216 + AluJb SINE Alu 1 296 -16 525 267 0 0 chr15 5291332 5291592 -80404162 + (TG)n Simple_repeat Simple_repeat 1 260 0 1512 223 56 11 chr15 5291762 5292201 -80403553 + MER89 LTR ERV1 1 559 0 375 287 65 57 chr15 5292611 5292841 -80402913 + MIR SINE MIR 31 262 0 3646 214 66 7 chr15 5293493 5294324 -80401430 - L1MC3 LINE L1 -511 7274 6395 312 202 34 56 chr15 5295921 5296010 -80399744 - L1MCa LINE L1 -4336 2090 2004 480 275 8 23 chr15 5296025 5296156 -80399598 - L2 LINE L2 0 3272 3144 27 29 0 0 chr15 5297313 5297347 -80398407 + AT_rich Low_complexity Low_complexity 1 34 0 213 261 0 0 chr15 5297583 5297629 -80398125 + (TA)n Simple_repeat Simple_repeat 1 46 0 404 163 29 0 chr15 5297629 5297709 -80398045 + MLT2D LTR ERVL 301 480 -40 198 236 0 0 chr15 5297726 5297781 -80397973 + (TA)n Simple_repeat Simple_repeat 2 56 0 1944 162 29 21 chr15 5297801 5298141 -80397613 - MLT2D LTR ERVL -41 373 31 1009 66 22 0 chr15 5299625 5299762 -80395992 - L1MA8 LINE L1 -25 6266 6127 379 127 89 0 chr15 5299763 5299842 -80395912 - L1 LINE L1 -861 5285 5200 1869 152 108 8 chr15 5299845 5300214 -80395540 - L1MA8 LINE L1 -165 6126 5721 3404 97 19 13 chr15 5300214 5300705 -80395049 + LTR15 LTR ERV1 1 595 0 3077 133 19 35 chr15 5300705 5300929 -80394825 - L1MA8 LINE L1 -567 5724 5498 3772 131 38 0 chr15 5300929 5301488 -80394266 + LTR19B LTR ERV1 1 580 0 3077 133 19 35 chr15 5301488 5302215 -80393539 - L1MA8 LINE L1 -793 5498 4790 333 0 0 0 chr15 5302215 5302252 -80393502 + (TG)n Simple_repeat Simple_repeat 2 38 0 894 192 12 6 chr15 5302254 5302426 -80393328 - AluJb SINE Alu -23 289 117 1735 142 14 0 chr15 5302426 5302714 -80393040 - L1MA8 LINE L1 -1367 4779 4488 306 0 0 0 chr15 5303361 5303395 -80392359 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 211 0 0 chr15 5304641 5304679 -80391075 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 305 301 94 8 chr15 5304679 5304797 -80390957 + L1MC4 LINE L1 6589 6703 -1339 * 308 255 128 11 chr15 5304752 5304846 -80390908 - L1MC4 LINE L1 -1337 6705 6601 322 292 45 11 chr15 5305085 5305174 -80390580 + L1MC4 LINE L1 6611 6702 -1340 * 325 267 35 12 chr15 5305149 5305235 -80390519 - L1MC4 LINE L1 -1341 6701 6614 192 152 0 0 chr15 5306028 5306061 -80389693 + T-rich Low_complexity Low_complexity 3 35 0 303 268 117 57 chr15 5306934 5307199 -80388555 - L1M4 LINE L1 -1073 5073 4793 4134 152 197 20 chr15 5307203 5308493 -80387261 + pTR5 LTR ERV1 741 2437 -1 3725 179 37 13 chr15 5308576 5309334 -80386420 - L1MA7 LINE L1 0 6291 5516 5722 168 19 4 chr15 5309335 5310392 -80385362 + L1 LINE L1 3646 4718 -1428 517 297 28 31 chr15 5310393 5310679 -80385075 - L1M4 LINE L1 -1440 4706 4422 596 285 16 36 chr15 5311144 5311337 -80384417 - MIR SINE MIR -30 232 44 1288 159 40 36 chr15 5312184 5312236 -80383518 - L1MA5 LINE L1 -2 6298 6248 1949 107 3 58 chr15 5312236 5312545 -80383209 - AluSx SINE Alu -20 292 1 1288 159 40 36 chr15 5312545 5312768 -80382986 - L1MA5 LINE L1 -52 6248 6022 22 80 0 0 chr15 5312963 5313013 -80382741 + AT_rich Low_complexity Low_complexity 1 50 0 3945 144 29 47 chr15 5313021 5313505 -80382249 - L1MB3 LINE L1 -2 6181 5715 3625 135 23 30 chr15 5313505 5314112 -80381642 + LTR26 LTR ERV1 1 603 0 3945 144 29 47 chr15 5314112 5314395 -80381359 - L1MB3 LINE L1 -468 5715 5428 1155 201 17 8 chr15 5314681 5314920 -80380834 + MER4E LTR ERV1 539 779 0 1112 211 164 40 chr15 5315862 5316450 -80379304 + LTR48 LTR ERV1 1 644 0 366 307 15 0 chr15 5317659 5317796 -80377958 - L1MA10 LINE L1 -20 6314 6176 241 215 177 0 chr15 5317831 5317910 -80377844 - L1ME2 LINE L1 -228 5936 5844 198 192 0 0 chr15 5317910 5317962 -80377792 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5317983 5318017 -80377737 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 200 89 67 0 chr15 5318062 5318107 -80377647 + (TA)n Simple_repeat Simple_repeat 2 49 0 341 219 78 23 chr15 5318198 5318326 -80377428 - L1ME2 LINE L1 -364 5802 5668 245 123 15 77 chr15 5318329 5318394 -80377360 + MSTC LTR MaLR 6 66 -362 837 238 42 26 chr15 5318539 5318804 -80376950 + MSTC LTR MaLR 157 425 -3 335 196 145 58 chr15 5318808 5318946 -80376808 - L1ME2 LINE L1 -491 5675 5526 885 224 40 40 chr15 5318996 5319299 -80376455 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5319454 5319516 -80376238 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 662 229 4 32 chr15 5320827 5321080 -80374674 + L1M4 LINE L1 2925 3170 -2976 1928 138 31 7 chr15 5322862 5323151 -80372603 + AluSx SINE Alu 1 296 -16 2481 88 0 0 chr15 5323790 5324098 -80371656 - AluSc SINE Alu -1 308 1 25 31 0 0 chr15 5327122 5327154 -80368600 + AT_rich Low_complexity Low_complexity 1 32 0 22574 171 29 16 chr15 5327636 5332788 -80362966 - L1P3 LINE L1 -743 5718 430 1749 239 35 26 chr15 5332814 5333368 -80362386 - L1P3 LINE L1 -5330 545 2 348 225 117 0 chr15 5333624 5333735 -80362019 - L1MC4 LINE L1 0 8042 7919 2266 107 7 0 chr15 5333803 5334103 -80361651 - AluSx SINE Alu -10 302 1 236 294 0 0 chr15 5334203 5334295 -80361459 - Charlie2a DNA MER1_type -1370 1492 1401 24 32 0 0 chr15 5335221 5335252 -80360502 + AT_rich Low_complexity Low_complexity 1 31 0 231 236 14 28 chr15 5335347 5335419 -80360335 + CT-rich Low_complexity Low_complexity 4 74 0 2097 138 0 0 chr15 5336140 5336436 -80359318 - AluSq SINE Alu -17 296 1 22 35 0 0 chr15 5336632 5336661 -80359093 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr15 5336680 5336713 -80359041 + AT_rich Low_complexity Low_complexity 1 33 0 697 286 53 11 chr15 5337081 5337363 -80358391 + L1P3 LINE L1 5561 5853 -319 1217 146 59 14 chr15 5338003 5338223 -80357531 + MER30 DNA MER1_type 1 230 0 1978 146 7 7 chr15 5338744 5339046 -80356708 + AluSx SINE Alu 1 302 -10 713 251 79 20 chr15 5339211 5339554 -80356200 + Charlie2a DNA MER1_type 911 1273 -1589 722 319 83 27 chr15 5339686 5340093 -80355661 - L2 LINE L2 -20 3293 2864 294 333 72 31 chr15 5340129 5340447 -80355307 - L2 LINE L2 -586 2728 2398 182 264 57 0 chr15 5341080 5341133 -80354621 - L2 LINE L2 -2 3311 3256 2314 74 0 0 chr15 5341266 5341580 -80354174 - AluY SINE Alu 0 314 1 983 106 0 0 chr15 5341585 5341717 -80354037 - AluY SINE Alu -179 132 1 232 192 48 67 chr15 5341747 5341851 -80353903 + MLT1I LTR MaLR 249 350 -59 1035 252 91 23 chr15 5341935 5341993 -80353761 - MLT2F LTR ERVL -9 654 601 300 27 0 0 chr15 5341993 5342030 -80353724 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 414 0 0 0 chr15 5342029 5342075 -80353679 + (TG)n Simple_repeat Simple_repeat 1 46 0 1035 252 91 23 chr15 5342030 5342151 -80353603 - MLT2F LTR ERVL -62 601 490 189 0 0 0 chr15 5342151 5342172 -80353582 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 1035 252 91 23 chr15 5342172 5342476 -80353278 - MLT2F LTR ERVL -173 490 185 1732 255 47 72 chr15 5342571 5344283 -80351471 - L1MEc LINE L1 -3164 3051 1437 368 128 21 32 chr15 5344284 5344378 -80351376 + CT-rich Low_complexity Low_complexity 3 95 0 351 265 61 39 chr15 5344453 5344683 -80351071 - L1MEc LINE L1 -5037 1181 947 345 291 52 70 chr15 5344690 5344920 -80350834 - L1MEc LINE L1 -5510 886 661 349 347 52 38 chr15 5345596 5346074 -80349680 - L1M4 LINE L1 -3174 2972 2488 343 340 44 6 chr15 5346466 5346625 -80349129 - MER20B DNA MER1_type -612 171 7 343 221 54 69 chr15 5346756 5346960 -80348794 - HAL1b LINE L1 -468 880 680 421 288 144 55 chr15 5347266 5347729 -80348025 - HAL1b LINE L1 -824 524 65 325 246 155 16 chr15 5347734 5347921 -80347833 - MER58C DNA MER1_type -2 213 1 1260 152 13 0 chr15 5350686 5350917 -80344837 - L1MA4A LINE L1 -5 6298 6065 249 337 32 11 chr15 5351460 5351555 -80344199 + L2 LINE L2 3197 3293 -20 22 35 0 0 chr15 5352783 5352812 -80342942 + AT_rich Low_complexity Low_complexity 1 29 0 8300 229 56 27 chr15 5353076 5353424 -80342330 - L1MC3 LINE L1 -7 8058 7722 2425 62 3 0 chr15 5353424 5353714 -80342040 - AluY SINE Alu -16 295 5 8300 229 56 27 chr15 5353714 5355715 -80340039 - L1MC3 LINE L1 -343 7722 5565 2007 131 17 14 chr15 5355715 5356012 -80339742 - AluSx SINE Alu -14 298 1 8300 229 56 27 chr15 5356012 5356940 -80338814 - L1MC3 LINE L1 -2500 5565 4666 3714 254 76 37 chr15 5356965 5358003 -80337751 - L1MC3 LINE L1 -2084 4342 3346 2190 124 0 0 chr15 5358003 5358293 -80337461 + AluSp SINE Alu 1 290 -23 810 124 84 22 chr15 5358293 5358471 -80337283 - L1MA5A LINE L1 -9 6288 6100 3714 254 76 37 chr15 5358471 5359361 -80336393 - L1MC3 LINE L1 -3079 3347 2335 34 0 0 0 chr15 5359405 5359439 -80336315 + AT_rich Low_complexity Low_complexity 1 34 0 478 305 97 55 chr15 5359457 5359696 -80336058 - L1 LINE L1 -3177 3249 3021 934 245 84 25 chr15 5359696 5360018 -80335736 + MER58B DNA MER1_type 1 341 0 478 305 97 55 chr15 5360018 5360336 -80335418 - L1 LINE L1 -3405 3021 2647 288 53 0 0 chr15 5360336 5360374 -80335380 + (TG)n Simple_repeat Simple_repeat 1 38 0 478 305 97 55 chr15 5360374 5360487 -80335267 - L1 LINE L1 -3779 2647 2540 228 238 0 0 chr15 5360487 5360550 -80335204 - L1MC4 LINE L1 0 8042 7980 23 33 0 0 chr15 5360805 5360835 -80334919 + AT_rich Low_complexity Low_complexity 1 30 0 2576 57 0 13 chr15 5361509 5361824 -80333930 - AluY SINE Alu 0 311 1 219 329 29 0 chr15 5362082 5362152 -80333602 + MIR3 SINE MIR 85 156 -52 515 261 30 0 chr15 5362613 5362747 -80333007 + MER21B LTR ERV1 304 441 -422 2316 147 9 104 chr15 5362813 5363343 -80332411 + LTR12 LTR ERV1 1 480 -234 225 57 0 29 chr15 5363808 5363843 -80331911 + (TTTTA)n Simple_repeat Simple_repeat 5 160 0 787 234 0 25 chr15 5363843 5364002 -80331752 - FRAM SINE Alu -25 151 1 1520 129 47 0 chr15 5364319 5364551 -80331203 - L1MA5A LINE L1 -11 6286 6044 30 0 0 0 chr15 5364558 5364588 -80331166 + AT_rich Low_complexity Low_complexity 1 30 0 2400 77 0 19 chr15 5364715 5365039 -80330715 + AluYb8 SINE Alu 1 318 0 3699 80 4 0 chr15 5365627 5366077 -80329677 + MLT2A2 LTR ERVL 1 452 -1 776 257 48 0 chr15 5366129 5366335 -80329419 - MER20 DNA MER1_type -1 218 3 1661 234 131 30 chr15 5367160 5367377 -80328377 + L1MDa LINE L1 21 215 -6325 288 0 0 0 chr15 5367377 5367409 -80328345 + (CA)n Simple_repeat Simple_repeat 2 33 0 1661 234 131 30 chr15 5367409 5367755 -80327999 + L1MDa LINE L1 215 641 -5899 * 1787 216 67 17 chr15 5367753 5368229 -80327525 - L1MDa LINE L1 -5000 1540 1041 2773 160 36 5 chr15 5368578 5369021 -80326733 - MSTB2 LTR MaLR 0 457 1 378 0 0 0 chr15 5369109 5369151 -80326603 + (CA)n Simple_repeat Simple_repeat 1 42 0 316 273 47 35 chr15 5369777 5369949 -80325805 - L1M4 LINE L1 -1437 4709 4536 22 0 0 0 chr15 5371548 5371570 -80324184 + AT_rich Low_complexity Low_complexity 1 22 0 637 233 8 0 chr15 5371570 5371699 -80324055 - MLT1C LTR MaLR -46 421 292 2543 174 44 25 chr15 5371718 5372241 -80323513 - L1MA6 LINE L1 -1 6299 5767 2294 194 29 12 chr15 5373453 5373943 -80321811 + LTR53 LTR ERVL 20 517 -2 1875 199 14 6 chr15 5374230 5374586 -80321168 + MLT1A1 LTR MaLR 7 365 0 394 252 25 23 chr15 5375215 5375392 -80320362 + HERVL74 LTR ERVL 982 1230 -2407 762 191 0 31 chr15 5375392 5375554 -80320200 - L1MC/D LINE L1 -630 5612 5456 1912 255 75 54 chr15 5377260 5377340 -80318414 + MER21B LTR ERV1 19 96 -767 2375 88 3 10 chr15 5377340 5377648 -80318106 - AluSp SINE Alu -7 306 1 1912 255 75 54 chr15 5377648 5378305 -80317449 + MER21B LTR ERV1 96 771 -92 412 284 153 6 chr15 5379926 5380102 -80315652 + MLT1J2 LTR MaLR 3 204 -246 882 291 96 34 chr15 5380146 5380593 -80315161 + LTR33 LTR ERVL 47 521 0 346 203 11 22 chr15 5381871 5382053 -80313701 + (TG)n Simple_repeat Simple_repeat 1 180 0 409 207 6 11 chr15 5382101 5382280 -80313474 + (TG)n Simple_repeat Simple_repeat 2 179 0 404 325 24 8 chr15 5383689 5383812 -80311942 - L2 LINE L2 -11 3261 3137 661 309 133 46 chr15 5384054 5384550 -80311204 + L2 LINE L2 159 697 -2617 1238 276 165 12 chr15 5384583 5385221 -80310533 + L1M4 LINE L1 2296 3030 -3116 1911 275 72 31 chr15 5385237 5385981 -80309773 + L1M4 LINE L1 3158 3870 -2276 2173 112 0 17 chr15 5385981 5386276 -80309478 + AluSx SINE Alu 1 290 -22 1911 275 72 31 chr15 5386276 5386558 -80309196 + L1M4 LINE L1 3870 4229 -1917 1914 157 47 18 chr15 5386558 5386940 -80308814 - L1MB4 LINE L1 -7 6173 5781 4405 200 50 22 chr15 5387125 5388570 -80307184 - L1MB4 LINE L1 -419 5761 4277 220 333 12 0 chr15 5388583 5388664 -80307090 + MIR3 SINE MIR 126 207 -1 234 0 0 0 chr15 5389748 5389774 -80305980 + (TG)n Simple_repeat Simple_repeat 2 27 0 2490 171 107 13 chr15 5390907 5391333 -80304421 + MLT2B2 LTR ERVL 1 476 -39 917 173 11 148 chr15 5391333 5391610 -80304144 - MER8 DNA MER2_type 0 239 1 2490 171 107 13 chr15 5391610 5391650 -80304104 + MLT2B2 LTR ERVL 476 511 -4 5720 148 18 10 chr15 5393195 5394211 -80301543 - L1 LINE L1 -1293 4853 3830 1811 131 6 51 chr15 5394473 5394814 -80300940 + AluSq SINE Alu 1 313 0 1589 189 150 14 chr15 5396278 5396712 -80299042 - LTR54B LTR ERV1 -1 497 5 197 272 39 48 chr15 5397281 5397384 -80298370 - L2 LINE L2 -217 3096 2995 188 382 22 0 chr15 5397782 5397871 -80297883 + MIR SINE MIR 93 183 -79 2540 228 48 159 chr15 5398754 5399832 -80295922 + L1ME2 LINE L1 2333 3529 -2617 326 175 0 0 chr15 5399832 5399895 -80295859 + Alu SINE Alu 240 302 0 2540 228 48 159 chr15 5399895 5400247 -80295507 + L1ME2 LINE L1 3529 3505 -2641 1619 201 7 0 chr15 5400247 5400544 -80295210 + AluJb SINE Alu 1 302 -10 189 0 0 0 chr15 5400544 5400565 -80295189 + (CA)n Simple_repeat Simple_repeat 2 22 0 2540 228 48 159 chr15 5400575 5401286 -80294468 + L1ME2 LINE L1 3504 4292 -1854 1118 119 0 0 chr15 5401324 5401483 -80294271 + AluSg/x SINE Alu 154 312 0 2443 241 107 20 chr15 5401502 5402855 -80292899 + L1ME2 LINE L1 4407 6126 -38 261 289 59 40 chr15 5402753 5402905 -80292849 + L1MA10 LINE L1 6180 6334 0 * 1443 260 37 12 chr15 5403700 5404188 -80291566 - L1M4 LINE L1 -973 5173 4674 2337 68 65 0 chr15 5404191 5404484 -80291270 + L1PB1 LINE L1 5834 6145 -6 447 322 0 0 chr15 5404507 5404653 -80291101 - L1MEc LINE L1 -3629 2586 2441 2032 142 3 0 chr15 5404688 5404991 -80290763 + AluSx SINE Alu 1 304 -8 228 231 77 33 chr15 5404991 5405073 -80290681 + LTR38 LTR ERV1 468 556 0 659 270 44 0 chr15 5405074 5405278 -80290476 - L1MEc LINE L1 -3772 2443 2231 860 247 49 63 chr15 5405289 5405539 -80290215 - L1MEc LINE L1 -6034 362 110 207 0 0 0 chr15 5405539 5405562 -80290192 + (TC)n Simple_repeat Simple_repeat 2 24 0 2156 96 21 0 chr15 5405562 5405844 -80289910 - AluSp SINE Alu -22 291 4 860 247 49 63 chr15 5405844 5405940 -80289814 - L1MEc LINE L1 -6284 112 20 611 220 113 0 chr15 5406432 5406600 -80289154 + MER20 DNA MER1_type 33 219 0 280 257 88 9 chr15 5409555 5409668 -80286086 + L1M4 LINE L1 3659 3780 -2366 21 36 0 0 chr15 5410495 5410523 -80285231 + AT_rich Low_complexity Low_complexity 1 28 0 417 285 89 49 chr15 5410576 5411102 -80284652 + L1ME1 LINE L1 1336 1882 -4839 * 2878 233 49 19 chr15 5411101 5411388 -80284366 + L1ME1 LINE L1 5298 5575 -985 1455 193 68 17 chr15 5411388 5411683 -80284071 + AluJo SINE Alu 1 310 -2 2878 233 49 19 chr15 5411683 5412427 -80283327 + L1ME1 LINE L1 5575 6362 -198 2358 271 63 14 chr15 5412426 5413425 -80282329 + L1MEc LINE L1 1757 2848 -3873 * 1699 256 64 26 chr15 5413437 5414079 -80281675 + L1MEc LINE L1 4035 4700 -1840 440 323 32 14 chr15 5414153 5414373 -80281381 + L1MEc LINE L1 3866 4089 -2451 924 276 104 3 chr15 5414490 5414874 -80280880 + L1MEc LINE L1 4668 5090 -1450 1788 181 0 0 chr15 5415041 5415379 -80280375 + AluJb SINE Alu 1 338 0 295 322 40 40 chr15 5415470 5415672 -80280082 + MLT1J LTR MaLR 308 509 -2 345 288 58 14 chr15 5415798 5415937 -80279817 + MIR SINE MIR 77 221 -41 2996 177 16 19 chr15 5416065 5416629 -80279125 + L1PA16 LINE L1 5586 6147 -19 220 320 13 0 chr15 5418536 5418611 -80277143 - L2 LINE L2 -2 3270 3195 2232 177 77 7 chr15 5418850 5419291 -80276463 - L1MB2 LINE L1 -7 6164 5693 2852 126 24 9 chr15 5419689 5420110 -80275644 - MSTA LTR MaLR 0 428 2 1176 222 61 80 chr15 5420200 5420793 -80274961 - MER67B LTR ERV1 -164 403 1 262 268 0 0 chr15 5420867 5420923 -80274831 + (TG)n Simple_repeat Simple_repeat 2 57 0 1651 187 0 17 chr15 5421521 5421821 -80273933 - AluJo SINE Alu -15 297 3 205 200 147 40 chr15 5423317 5423392 -80272362 - MER5A DNA MER1_type -89 100 18 278 226 189 79 chr15 5423496 5423686 -80272068 + MLT1J2 LTR MaLR 22 232 -218 281 182 159 23 chr15 5423749 5423837 -80271917 + MLT1J2 LTR MaLR 351 450 0 208 279 0 0 chr15 5424052 5424095 -80271659 + MER5A DNA MER1_type 63 105 -84 2210 101 0 19 chr15 5424361 5424668 -80271086 - AluSg SINE Alu -1 309 9 505 184 112 10 chr15 5424941 5425039 -80270715 + FLAM_C SINE Alu 2 109 -34 275 168 8 107 chr15 5425406 5425537 -80270217 + FRAM SINE Alu 23 140 -26 1920 61 32 4 chr15 5425540 5425787 -80269967 - AluY SINE Alu -14 297 44 872 281 35 24 chr15 5425811 5426099 -80269655 + MER93a LTR ERV1 112 402 0 2416 47 4 0 chr15 5427233 5427512 -80268242 - L1PA5 LINE L1 0 6154 5875 2618 61 0 0 chr15 5428437 5428748 -80267006 + AluY SINE Alu 1 311 0 304 374 107 0 chr15 5428893 5429080 -80266674 + MIR SINE MIR 32 238 -24 2448 78 0 0 chr15 5429458 5429767 -80265987 + AluSg1 SINE Alu 1 309 0 209 105 0 26 chr15 5431300 5431338 -80264416 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 2318 78 0 14 chr15 5434192 5434540 -80261214 + AluSq SINE Alu 1 313 0 195 42 0 0 chr15 5435185 5435209 -80260545 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr15 5438136 5438172 -80257582 + AT_rich Low_complexity Low_complexity 1 36 0 2156 93 0 84 chr15 5438172 5438505 -80257249 + AluSx SINE Alu 1 305 -7 201 74 0 0 chr15 5439249 5439276 -80256478 + (TG)n Simple_repeat Simple_repeat 2 28 0 739 75 0 98 chr15 5439905 5440038 -80255716 - LTR9B LTR ERV1 -84 560 441 283 224 0 71 chr15 5440071 5440156 -80255598 - L1P5 LINE L1 -708 5443 5365 216 233 33 17 chr15 5442108 5442168 -80253586 - MIR SINE MIR -120 142 82 22 0 0 0 chr15 5442429 5442451 -80253303 + AT_rich Low_complexity Low_complexity 1 22 0 279 220 258 68 chr15 5443112 5443244 -80252510 + MIR SINE MIR 88 244 -18 35 24 0 0 chr15 5443470 5443512 -80252242 + AT_rich Low_complexity Low_complexity 1 42 0 225 343 55 27 chr15 5445434 5445580 -80250174 + L2 LINE L2 3123 3272 0 1073 99 53 0 chr15 5446370 5446522 -80249232 - L1PA10 LINE L1 0 6168 6009 668 38 13 6 chr15 5446524 5446613 -80249141 + L1PA8A LINE L1 5796 5874 -257 236 271 86 14 chr15 5446919 5446989 -80248765 - L1M2a LINE L1 -6747 421 347 764 207 79 35 chr15 5447127 5447330 -80248424 - L1MD2 LINE L1 -459 5969 5758 5305 196 95 33 chr15 5447349 5448878 -80246876 - L1MDa LINE L1 -3892 2648 1025 27 49 0 0 chr15 5448932 5448973 -80246781 + AT_rich Low_complexity Low_complexity 1 41 0 355 283 101 0 chr15 5449162 5449300 -80246454 - L1MD2 LINE L1 -1050 5165 5014 425 250 74 28 chr15 5449457 5449633 -80246121 - L1MD2 LINE L1 -3584 2631 2448 1147 286 89 42 chr15 5449864 5450864 -80244890 - L1MD2 LINE L1 -4544 1852 806 25 0 0 0 chr15 5452805 5452830 -80242924 + AT_rich Low_complexity Low_complexity 1 25 0 199 280 192 0 chr15 5453214 5453339 -80242415 + L2 LINE L2 2334 2482 -832 229 303 86 63 chr15 5453580 5453801 -80241953 + L2 LINE L2 2849 3074 -198 21 0 0 0 chr15 5453900 5453921 -80241833 + AT_rich Low_complexity Low_complexity 1 21 0 2068 115 3 60 chr15 5453953 5454267 -80241487 - AluSp SINE Alu -17 296 1 2109 104 3 32 chr15 5456750 5457058 -80238696 + AluSq SINE Alu 1 299 -14 257 331 40 24 chr15 5457068 5457192 -80238562 - L1M4 LINE L1 -970 5176 5051 1034 230 72 23 chr15 5457409 5457937 -80237817 + MLT1E LTR MaLR 1 593 0 258 231 68 26 chr15 5457965 5458082 -80237672 - L1M4 LINE L1 -1434 4712 4591 404 332 135 9 chr15 5458337 5458566 -80237188 - HAL1b LINE L1 -994 354 97 2431 66 0 10 chr15 5458673 5458977 -80236777 - AluY SINE Alu -10 301 1 906 300 142 51 chr15 5459407 5460546 -80235208 + L2 LINE L2 2071 3307 -6 917 242 106 124 chr15 5461840 5462683 -80233071 + L1MCb LINE L1 570 1400 -4851 1880 73 4 0 chr15 5662685 5662930 -80032824 - AluSc SINE Alu -63 246 1 32 26 0 0 chr15 5662940 5662979 -80032775 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 5663139 5663160 -80032594 + AT_rich Low_complexity Low_complexity 1 21 0 669 214 30 40 chr15 5663161 5663362 -80032392 + L1MC5 LINE L1 6977 7175 -786 402 299 47 16 chr15 5663372 5663499 -80032255 + MER5B DNA MER1_type 48 178 0 270 304 54 20 chr15 5663590 5663738 -80032016 + L2 LINE L2 2942 3094 -178 530 271 47 10 chr15 5663829 5664021 -80031733 - L1ME1 LINE L1 -114 5986 5788 2268 86 7 0 chr15 5664161 5664462 -80031292 + AluSp SINE Alu 1 303 -10 1419 258 106 23 chr15 5664689 5665237 -80030517 - L1ME1 LINE L1 -298 5806 5165 2241 74 3 3 chr15 5665237 5665535 -80030219 - AluY SINE Alu -13 298 1 1419 258 106 23 chr15 5665535 5665722 -80030032 - L1ME1 LINE L1 -939 5165 4995 882 262 54 81 chr15 5665749 5665820 -80029934 - L1ME1 LINE L1 -3107 2973 2902 2653 146 50 7 chr15 5665820 5666280 -80029474 - L1MB2 LINE L1 -2 6169 5690 882 262 54 81 chr15 5666280 5666953 -80028801 - L1ME1 LINE L1 -3178 2902 2249 3131 185 189 6 chr15 5666955 5667678 -80028076 - L1MC3 LINE L1 -12 7773 6918 291 310 49 28 chr15 5667964 5668106 -80027648 - L1ME1 LINE L1 -5924 146 2 2280 74 0 10 chr15 5668247 5668556 -80027198 - AluY SINE Alu -5 306 1 714 330 113 45 chr15 5669006 5669425 -80026329 - L3 LINE CR1 -861 716 258 655 201 141 5 chr15 5669425 5669609 -80026145 - MER3 DNA MER1_type 0 209 1 714 330 113 45 chr15 5669609 5669674 -80026080 - L3 LINE CR1 -1319 258 199 1036 126 12 18 chr15 5669679 5669846 -80025908 - FRAM SINE Alu -9 167 2 2101 92 0 0 chr15 5670953 5671264 -80024490 + AluSc SINE Alu 1 311 0 250 268 18 36 chr15 5671759 5671871 -80023883 + CT-rich Low_complexity Low_complexity 3 112 0 532 262 55 75 chr15 5672206 5672363 -80023391 - HAL1 LINE L1 -1192 1315 1156 1710 110 110 11 chr15 5672363 5672644 -80023110 - AluSg SINE Alu 0 310 2 532 262 55 75 chr15 5672644 5673035 -80022719 - HAL1 LINE L1 -1351 1156 778 204 319 43 11 chr15 5673035 5673129 -80022625 + MER5B DNA MER1_type 23 119 -59 186 200 29 0 chr15 5673190 5673225 -80022529 - MER5B DNA MER1_type -134 44 9 432 225 7 63 chr15 5674642 5674784 -80020970 - L1MC4a LINE L1 -1973 5835 5702 250 326 7 0 chr15 5674976 5675114 -80020640 - L1P LINE L1 -726 5425 5287 24 0 0 0 chr15 5675466 5675490 -80020264 + AT_rich Low_complexity Low_complexity 1 24 0 2197 99 0 10 chr15 5675497 5675801 -80019953 + AluSq SINE Alu 1 301 -12 1975 71 4 0 chr15 5676219 5676471 -80019283 + AluSx SINE Alu 1 253 -59 4173 199 32 14 chr15 5676471 5677341 -80018413 - L1MA10 LINE L1 -39 6295 5410 21 71 0 0 chr15 5677762 5677804 -80017950 + AT_rich Low_complexity Low_complexity 1 42 0 623 312 28 43 chr15 5677812 5678376 -80017378 - L1M4 LINE L1 -1662 4484 3929 2182 116 3 0 chr15 5678391 5678702 -80017052 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5678785 5678834 -80016920 - L1MC4 LINE L1 -99 7943 7896 2231 114 0 9 chr15 5678834 5679149 -80016605 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5679149 5679350 -80016404 - L1MC4 LINE L1 -146 7896 7689 330 244 26 43 chr15 5679971 5680086 -80015668 - L1MC4a LINE L1 -391 7417 7305 2562 171 17 11 chr15 5680260 5680733 -80015021 - L1MB3 LINE L1 -233 5950 5475 579 304 84 4 chr15 5680792 5681019 -80014735 - MER119 DNA MER1_type -338 245 1 2127 62 0 117 chr15 5681425 5681777 -80013977 + AluY SINE Alu 1 311 0 666 294 21 0 chr15 5681835 5682029 -80013725 + L1MC5 LINE L1 6635 6832 -1129 727 213 40 109 chr15 5682075 5682404 -80013350 + L1MC5 LINE L1 6820 7125 -836 301 273 48 95 chr15 5682534 5682765 -80012989 + L1MC5 LINE L1 7308 7527 -434 2235 56 0 11 chr15 5682937 5683253 -80012501 - AluY SINE Alu 0 313 1 252 270 90 0 chr15 5684469 5684558 -80011196 - MLT1I LTR MaLR -243 166 70 2002 84 22 0 chr15 5686716 5686989 -80008765 - AluSx SINE Alu -14 298 20 2318 184 29 63 chr15 5687348 5687764 -80007990 + MLT1D LTR MaLR 1 397 -108 1783 168 3 3 chr15 5687764 5688073 -80007681 - AluJo SINE Alu -3 309 1 2318 184 29 63 chr15 5688073 5688179 -80007575 + MLT1D LTR MaLR 397 505 0 224 146 24 0 chr15 5690038 5690079 -80005675 + L2 LINE L2 3225 3266 -6 1920 137 0 0 chr15 5690671 5690963 -80004791 - AluJb SINE Alu -20 292 1 5217 201 36 16 chr15 5690976 5691541 -80004213 - L1MC3 LINE L1 -8 7777 7225 2344 85 3 0 chr15 5691541 5691847 -80003907 + AluY SINE Alu 1 307 -4 5217 201 36 16 chr15 5691847 5692196 -80003558 - L1MC3 LINE L1 -560 7225 6833 1928 174 21 6 chr15 5692196 5692535 -80003219 - MER2 DNA MER2_type 0 344 1 5217 201 36 16 chr15 5692535 5692767 -80002987 - L1MC3 LINE L1 -952 6833 6607 2158 113 7 0 chr15 5692774 5693075 -80002679 - AluSc SINE Alu -6 303 1 1183 133 6 0 chr15 5693075 5693256 -80002498 - AluSg/x SINE Alu -4 306 125 1292 202 0 8 chr15 5693476 5693733 -80002021 + AluJo SINE Alu 36 290 -22 261 335 112 22 chr15 5693977 5694156 -80001598 - MIR SINE MIR -48 214 20 1802 282 143 44 chr15 5694346 5695574 -80000180 + L2 LINE L2 1438 2786 -528 285 286 98 0 chr15 5695866 5695978 -79999776 + MER96 DNA MER1_type? 48 170 -5 320 299 9 9 chr15 5696332 5696439 -79999315 + MER112 DNA MER1_type 36 142 -118 312 328 24 16 chr15 5696530 5696655 -79999099 - MIR SINE MIR -62 146 21 280 233 33 22 chr15 5697109 5697199 -79998555 + MER5A DNA MER1_type 19 109 -80 24 32 0 0 chr15 5697717 5697748 -79998006 + AT_rich Low_complexity Low_complexity 1 31 0 3659 180 28 31 chr15 5697748 5698254 -79997500 - L1MB3 LINE L1 -7 6176 5673 2426 57 0 22 chr15 5698254 5698572 -79997182 - AluY SINE Alu 0 311 1 3659 180 28 31 chr15 5698572 5698865 -79996889 - L1MB3 LINE L1 -510 5673 5380 628 308 138 21 chr15 5699270 5699595 -79996159 + MLT1I LTR MaLR 47 409 0 2046 124 0 0 chr15 5700174 5700473 -79995281 - AluSc SINE Alu -2 307 9 2125 177 19 0 chr15 5700498 5700870 -79994884 + MLT1B LTR MaLR 12 390 0 185 218 109 18 chr15 5700951 5701006 -79994748 - L2 LINE L2 -62 3251 3192 1849 147 0 16 chr15 5701056 5701363 -79994391 + AluJb SINE Alu 1 302 -10 1754 164 3 10 chr15 5701373 5701671 -79994083 + AluJo SINE Alu 1 296 -16 255 271 27 59 chr15 5702492 5702620 -79993134 - MIR SINE MIR -37 171 48 635 254 11 16 chr15 5702787 5702972 -79992782 - L1MD2 LINE L1 -14 6739 6556 189 107 0 0 chr15 5702972 5703000 -79992754 + (TATG)n Simple_repeat Simple_repeat 4 31 0 513 243 95 7 chr15 5703002 5703150 -79992604 - L1MD2 LINE L1 -229 6524 6364 * 3445 210 28 38 chr15 5703142 5703576 -79992178 - L1MD2 LINE L1 -598 6155 5718 2335 80 0 0 chr15 5703576 5703875 -79991879 - AluSq SINE Alu -14 299 1 3445 210 28 38 chr15 5703875 5704929 -79990825 - L1MD2 LINE L1 -1035 5718 4674 2866 234 69 4 chr15 5704925 5705985 -79989769 - L1MD2 LINE L1 -3134 3406 2284 * 692 211 256 4 chr15 5705989 5706259 -79989495 - L1MD2 LINE L1 -4292 2248 1911 632 128 8 26 chr15 5706260 5706377 -79989377 - L1MB8 LINE L1 0 6178 6064 2391 78 0 0 chr15 5706518 5706825 -79988929 - AluY SINE Alu -4 307 1 22 35 0 0 chr15 5706831 5706860 -79988894 + AT_rich Low_complexity Low_complexity 1 29 0 3102 163 32 17 chr15 5706861 5707461 -79988293 - L1MB3 LINE L1 -2 6181 5573 229 303 46 0 chr15 5707504 5707613 -79988141 - L1MC5 LINE L1 -516 7445 7332 1048 217 14 0 chr15 5707720 5707932 -79987822 + MLT1B LTR MaLR 1 215 -175 653 213 0 0 chr15 5708076 5708198 -79987556 + FLAM_C SINE Alu 1 122 -11 942 9 0 0 chr15 5708216 5708323 -79987431 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1990 103 14 0 chr15 5708325 5708615 -79987139 - AluSx SINE Alu -18 294 1 221 271 17 17 chr15 5709406 5709524 -79986230 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 846 140 0 22 chr15 5709530 5709666 -79986088 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 5709895 5709916 -79985838 + AT_rich Low_complexity Low_complexity 1 21 0 607 280 84 108 chr15 5711148 5711777 -79983977 + HAL1b LINE L1 56 532 -816 3560 238 36 4 chr15 5711834 5712659 -79983095 + MER97a DNA MER1_type? 2 853 -41 365 348 29 47 chr15 5712989 5713480 -79982274 + L1MC/D LINE L1 2119 2563 -3652 263 267 74 48 chr15 5713613 5713924 -79981830 + L1MC/D LINE L1 2746 3064 -3151 559 307 76 57 chr15 5713968 5714336 -79981418 + L1MC/D LINE L1 3146 3520 -2695 361 342 26 0 chr15 5714343 5714460 -79981294 + L1MC/D LINE L1 3564 3683 -2532 270 270 88 65 chr15 5714554 5714895 -79980859 + L1MC/D LINE L1 4972 5320 -895 268 175 53 184 chr15 5714907 5715021 -79980733 + L1MC/D LINE L1 5483 5581 -2296 1078 315 81 34 chr15 5715320 5716145 -79979609 - L1M4 LINE L1 -1828 4318 3455 1199 201 123 9 chr15 5716229 5716547 -79979207 - MLT1A1 LTR MaLR -11 354 1 299 240 0 13 chr15 5717050 5717125 -79978629 + MIR SINE MIR 14 87 -175 209 247 76 101 chr15 5718841 5718999 -79976755 + MIR3 SINE MIR 23 176 -32 5544 171 43 1 chr15 5719361 5721299 -79974455 + L1PA16 LINE L1 4130 6157 -9 234 0 0 0 chr15 5723080 5723106 -79972648 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 293 225 0 101 chr15 5723461 5723550 -79972204 - MIR SINE MIR -70 192 113 228 35 0 0 chr15 5723984 5724013 -79971741 + (TC)n Simple_repeat Simple_repeat 1 29 0 306 73 0 0 chr15 5724048 5724089 -79971665 + (TC)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr15 5725623 5725650 -79970104 + AT_rich Low_complexity Low_complexity 1 27 0 1559 130 138 8 chr15 5725650 5725904 -79969850 - AluSg1 SINE Alu -22 287 1 1875 153 91 18 chr15 5725946 5726286 -79969468 - MLT1A1 LTR MaLR 0 365 1 2278 170 118 26 chr15 5726363 5726862 -79968892 - MLT1F1 LTR MaLR -2 565 21 216 0 0 0 chr15 5726867 5726891 -79968863 + (TA)n Simple_repeat Simple_repeat 2 25 0 2228 113 3 13 chr15 5726893 5727194 -79968560 - AluSx SINE Alu -14 298 1 1024 268 54 62 chr15 5727337 5727406 -79968348 - L1ME3A LINE L1 -219 5951 5883 2307 96 0 0 chr15 5727406 5727697 -79968057 - AluSx SINE Alu -17 295 5 1024 268 54 62 chr15 5727697 5728292 -79967462 - L1ME3A LINE L1 -287 5883 5292 603 281 133 0 chr15 5728353 5728563 -79967191 + MIR SINE MIR 3 240 -22 1808 96 137 4 chr15 5729284 5729554 -79966200 + AluSq SINE Alu 2 307 -6 249 284 128 27 chr15 5733287 5733435 -79962319 - MIR SINE MIR -31 231 69 216 135 0 0 chr15 5737318 5737355 -79958399 + (T)n Simple_repeat Simple_repeat 1 37 0 322 299 51 26 chr15 5737594 5737711 -79958043 + L1ME LINE L1 66 185 -5934 377 337 155 47 chr15 5737753 5738004 -79957750 + L1ME LINE L1 4730 5037 -1092 2378 96 3 3 chr15 5738004 5738306 -79957448 + AluSx SINE Alu 2 303 -9 377 337 155 47 chr15 5738306 5738434 -79957320 + L1ME LINE L1 5037 5150 -979 450 274 125 0 chr15 5738436 5738604 -79957150 + L1ME LINE L1 5182 5370 -759 384 313 42 0 chr15 5738652 5738818 -79956936 + L1ME LINE L1 5448 5620 -533 2146 176 60 56 chr15 5738836 5739354 -79956400 - MLT2B1 LTR ERVL 0 520 1 329 218 39 13 chr15 5739354 5739432 -79956322 - MER112 DNA MER1_type -60 200 121 1418 184 90 15 chr15 5739739 5740005 -79955749 - AluJb SINE Alu -12 290 5 224 298 0 18 chr15 5740257 5740314 -79955440 + L2 LINE L2 3200 3255 -17 2010 151 10 0 chr15 5740342 5740641 -79955113 - AluJb SINE Alu -2 310 9 469 243 53 13 chr15 5741171 5741323 -79954431 - MER103 DNA DNA -3 163 6 186 316 53 0 chr15 5741528 5741585 -79954169 + MIR SINE MIR 91 150 -58 253 314 81 0 chr15 5742558 5742644 -79953110 - MIR3 SINE MIR -45 163 71 883 266 26 49 chr15 5742732 5743081 -79952673 - MLT2C1 LTR ERVL -2 395 55 347 255 235 13 chr15 5743605 5743758 -79951996 + MER5A DNA MER1_type 3 189 0 401 245 151 69 chr15 5743774 5743814 -79951940 - MER5A DNA MER1_type -8 181 146 2351 105 0 0 chr15 5743814 5744118 -79951636 - AluSp SINE Alu -9 304 1 401 245 151 69 chr15 5744118 5744236 -79951518 - MER5A DNA MER1_type -43 146 10 440 250 27 27 chr15 5744283 5744395 -79951359 + MIR SINE MIR 39 150 -112 1764 181 0 3 chr15 5744400 5744692 -79951062 - AluJo SINE Alu -13 299 9 2074 113 3 3 chr15 5744720 5745024 -79950730 + AluSx SINE Alu 1 304 0 5219 195 43 19 chr15 5745055 5745609 -79950145 + L1MB3 LINE L1 3984 4523 -1660 2227 147 31 3 chr15 5745609 5745963 -79949791 - THE1B LTR MaLR 0 364 1 5219 195 43 19 chr15 5745963 5747546 -79948208 + L1MB3 LINE L1 4523 6176 -7 1274 181 76 24 chr15 5747620 5747869 -79947885 + AluJo SINE Alu 50 311 -1 457 285 48 5 chr15 5748535 5748721 -79947033 - L1ME3A LINE L1 -5 6165 5972 585 119 0 0 chr15 5748873 5748957 -79946797 + Alu SINE Alu 218 301 -10 837 292 144 41 chr15 5749186 5749609 -79946145 - L1MEc LINE L1 -2505 3710 3229 2399 74 10 7 chr15 5749609 5749919 -79945835 - AluY SINE Alu 0 311 1 837 292 144 41 chr15 5749919 5749981 -79945773 - L1MEc LINE L1 -2986 3229 3175 6572 83 11 7 chr15 5750004 5751327 -79944427 - L1PA10 LINE L1 0 6168 4850 350 283 24 72 chr15 5752123 5752194 -79943560 - LTR41 LTR ERVL -615 158 85 2339 80 0 10 chr15 5752194 5752522 -79943232 + AluY SINE Alu 1 325 0 350 283 24 72 chr15 5752522 5752613 -79943141 - LTR41 LTR ERVL -688 85 1 405 39 0 0 chr15 5752738 5752789 -79942965 + (TG)n Simple_repeat Simple_repeat 2 52 0 654 314 73 17 chr15 5752894 5753248 -79942506 - L1MEc LINE L1 -3601 2614 2283 715 186 122 5 chr15 5753279 5753467 -79942287 - MLT1B LTR MaLR 0 390 181 925 91 8 0 chr15 5753495 5753616 -79942138 - AluSp/q SINE Alu -14 299 178 822 134 474 21 chr15 5753667 5753861 -79941893 - LTR12 LTR ERV1 -507 207 55 244 250 0 0 chr15 5753861 5753913 -79941841 - LTR30 LTR ERV1 -670 52 1 248 149 85 0 chr15 5754109 5754156 -79941598 + L2 LINE L2 3203 3253 -60 1992 189 36 5 chr15 5754203 5754595 -79941159 + MLT2D LTR ERVL 3 406 -8 833 242 63 62 chr15 5755465 5755703 -79940051 - MER77 LTR ERV1 -3 602 454 2586 60 0 16 chr15 5755703 5756018 -79939736 + AluY SINE Alu 1 310 -1 833 242 63 62 chr15 5756018 5756197 -79939557 - MER77 LTR ERV1 -151 454 277 320 263 94 60 chr15 5756221 5756486 -79939268 - MER21B LTR ERV1 -400 205 57 771 196 67 11 chr15 5756739 5756918 -79938836 - MER5A DNA MER1_type 0 189 1 485 227 117 19 chr15 5757713 5757867 -79937887 + MER5A DNA MER1_type 1 169 -20 22 70 0 0 chr15 5758246 5758289 -79937465 + AT_rich Low_complexity Low_complexity 1 43 0 1896 190 0 0 chr15 5758765 5759065 -79936689 + AluJb SINE Alu 1 300 -12 208 247 0 14 chr15 5759074 5759147 -79936607 + A-rich Low_complexity Low_complexity 3 74 0 1547 192 95 24 chr15 5759677 5760047 -79935707 - MSTD LTR MaLR 0 396 1 2427 105 0 0 chr15 5760693 5760998 -79934756 - AluSg SINE Alu -4 306 2 414 0 0 0 chr15 5761126 5761172 -79934582 + (TG)n Simple_repeat Simple_repeat 2 47 0 414 267 109 48 chr15 5761486 5761651 -79934103 - MER5B DNA MER1_type -1 177 3 592 231 105 31 chr15 5762872 5763200 -79932554 + L1MCc LINE L1 1354 1874 -4961 * 765 221 76 42 chr15 5763173 5763206 -79932548 + L1M4 LINE L1 5143 5173 -1768 1770 162 43 16 chr15 5763206 5763323 -79932431 + AluJb SINE Alu 1 113 -199 195 42 0 0 chr15 5763323 5763347 -79932407 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1770 162 43 16 chr15 5763347 5763532 -79932222 + AluJb SINE Alu 113 311 -1 765 221 76 42 chr15 5763532 5763828 -79931926 + L1M4 LINE L1 5173 5483 -1458 1847 154 104 82 chr15 5763944 5764301 -79931453 - MLT1C LTR MaLR -4 463 92 1923 114 81 0 chr15 5764301 5764573 -79931181 - AluSc SINE Alu -15 294 1 1847 154 104 82 chr15 5764573 5764668 -79931086 - MLT1C LTR MaLR -375 92 1 1202 160 9 27 chr15 5766812 5767037 -79928717 - MLT1A1 LTR MaLR 0 365 145 279 173 0 0 chr15 5767051 5767103 -79928651 + CT-rich Low_complexity Low_complexity 3 54 0 2012 98 0 52 chr15 5767109 5767396 -79928358 - AluSg SINE Alu -38 272 1 908 124 20 13 chr15 5767396 5767549 -79928205 - MLT1A1 LTR MaLR -209 156 3 233 298 67 19 chr15 5767692 5767796 -79927958 + L1ME4a LINE L1 5959 6067 -54 1057 153 5 20 chr15 5769379 5769582 -79926172 - MER96B DNA MER1_type? -165 252 53 294 327 113 37 chr15 5769605 5770072 -79925682 + L1M4 LINE L1 4048 4593 -1553 1905 152 7 7 chr15 5770072 5770368 -79925386 + AluSx SINE Alu 1 296 -16 294 327 113 37 chr15 5770368 5770633 -79925121 + L1M4 LINE L1 4593 4836 -1310 2361 81 0 29 chr15 5770660 5770967 -79924787 + AluSc SINE Alu 1 298 -11 363 250 13 0 chr15 5770984 5771060 -79924694 + MER81 DNA DNA 2 78 -36 394 273 169 26 chr15 5771134 5771288 -79924466 + MER5B DNA MER1_type 3 178 0 533 271 72 62 chr15 5771914 5772346 -79923408 + HAL1 LINE L1 1239 1674 -833 2521 84 0 0 chr15 5774183 5774493 -79921261 + AluY SINE Alu 2 311 0 186 275 50 0 chr15 5774527 5774607 -79921147 + L2 LINE L2 2570 2653 -661 2307 164 13 0 chr15 5774687 5775077 -79920677 - MSTD LTR MaLR 0 396 2 360 0 0 0 chr15 5777690 5777730 -79918024 + (TG)n Simple_repeat Simple_repeat 2 41 0 415 163 0 22 chr15 5778543 5778635 -79917119 + CT-rich Low_complexity Low_complexity 3 92 0 195 42 0 0 chr15 5778635 5778659 -79917095 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 5778769 5778791 -79916963 + GC_rich Low_complexity Low_complexity 1 22 0 3152 193 22 3 chr15 5779189 5779837 -79915917 - L1MB5 LINE L1 -1 6173 5514 239 278 0 0 chr15 5780398 5780452 -79915302 + MER53 DNA DNA 1 54 -135 605 152 32 70 chr15 5780454 5780612 -79915142 + L1MB2 LINE L1 6020 6171 0 284 215 0 0 chr15 5780613 5780678 -79915076 - MER53 DNA DNA -33 156 92 186 314 0 0 chr15 5783576 5783627 -79912127 + MIR SINE MIR 98 148 -60 2257 106 0 3 chr15 5783698 5783990 -79911764 - AluSx SINE Alu -21 291 1 3256 171 9 28 chr15 5784366 5785034 -79910720 + L1MB3 LINE L1 5528 6182 -1 949 167 27 45 chr15 5785683 5785905 -79909849 - MER20 DNA MER1_type -1 218 1 2088 131 7 3 chr15 5788353 5788659 -79907095 + AluSc SINE Alu 1 307 -2 2500 100 0 0 chr15 5788669 5788979 -79906775 + AluSg SINE Alu 1 310 0 231 291 139 12 chr15 5788983 5789148 -79906606 - MLT1J LTR MaLR -92 419 234 227 262 49 0 chr15 5789790 5789851 -79905903 - MLT1L LTR MaLR -351 264 201 343 289 39 31 chr15 5790268 5790396 -79905358 - MIR SINE MIR -85 177 49 306 283 87 3 chr15 5790469 5790660 -79905094 - MIR SINE MIR -3 259 2 381 320 71 63 chr15 5792074 5792562 -79903192 - L1MC/D LINE L1 -527 5594 5311 1570 136 99 0 chr15 5792562 5792864 -79902890 - L1MA9 LINE L1 -5 6307 5976 381 320 71 63 chr15 5792864 5792911 -79902843 - L1MC/D LINE L1 -810 5311 5266 2072 139 0 3 chr15 5793117 5793411 -79902343 + AluSx SINE Alu 1 293 -19 371 318 81 52 chr15 5793442 5793864 -79901890 - L1MC/D LINE L1 -1101 5045 4637 2395 108 0 0 chr15 5793864 5794169 -79901585 - AluSx SINE Alu -7 305 1 371 318 81 52 chr15 5794169 5794637 -79901117 - L1MC/D LINE L1 -1509 4637 4129 2796 222 82 68 chr15 5794747 5795582 -79900172 - L1MC5 LINE L1 -112 7849 6992 2650 63 0 0 chr15 5795582 5795885 -79899869 + AluY SINE Alu 1 303 -8 2796 222 82 68 chr15 5795885 5796221 -79899533 - L1MC5 LINE L1 -969 6992 6662 1463 246 71 62 chr15 5796238 5796775 -79898979 + MLT1F LTR MaLR 1 542 0 28 29 0 0 chr15 5797154 5797189 -79898565 + AT_rich Low_complexity Low_complexity 1 35 0 394 288 107 40 chr15 5797331 5797613 -79898141 - L1MC5 LINE L1 -359 5762 5643 235 298 0 39 chr15 5799248 5799352 -79896402 + L2 LINE L2 2926 3025 -288 757 206 75 33 chr15 5802384 5802598 -79893156 + MER58A DNA MER1_type 1 223 -1 667 180 29 41 chr15 5802690 5802862 -79892892 - MER3 DNA MER1_type -30 179 10 1765 153 31 59 chr15 5805116 5805437 -79890317 + AluJb SINE Alu 1 312 0 2485 70 0 7 chr15 5805484 5805785 -79889969 + AluSp SINE Alu 1 299 -14 4388 189 31 2 chr15 5807873 5808783 -79886971 - L1MA8 LINE L1 -4 6287 5352 1656 198 64 1 chr15 5809582 5810071 -79885683 - MER68 LTR ERV1 0 562 8 224 338 14 0 chr15 5810120 5810191 -79885563 + MIR SINE MIR 50 121 -141 1027 200 9 9 chr15 5811325 5811540 -79884214 + MER20 DNA MER1_type 3 217 -2 2422 96 0 6 chr15 5811556 5811870 -79883884 - AluSq SINE Alu -1 312 1 2244 109 0 13 chr15 5812811 5813113 -79882641 + AluSq SINE Alu 1 298 -15 845 209 0 23 chr15 5815140 5815312 -79880442 + AluJo SINE Alu 1 168 -144 240 152 0 0 chr15 5815314 5815360 -79880394 + Alu SINE Alu 84 129 -4 238 302 174 0 chr15 5817245 5817331 -79878423 - MIR SINE MIR -115 147 47 184 277 126 63 chr15 5817413 5817452 -79878302 + L3 LINE CR1 1298 1333 -244 500 198 27 9 chr15 5817452 5817563 -79878191 - MER81 DNA DNA 0 114 2 184 277 126 63 chr15 5817563 5817682 -79878072 + L3 LINE CR1 1333 1466 -111 212 204 23 0 chr15 5819084 5819128 -79876626 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 321 320 0 0 chr15 5819128 5819206 -79876548 - L2 LINE L2 0 3272 3195 699 294 124 8 chr15 5819682 5820046 -79875708 - MLT1J2 LTR MaLR -7 443 38 319 167 0 0 chr15 5820972 5821026 -79874728 - MIR SINE MIR -131 131 78 1417 254 58 32 chr15 5823024 5823492 -79872262 - L1MB3 LINE L1 -6 6177 5686 322 135 0 0 chr15 5823593 5823645 -79872109 + Alu SINE Alu 239 290 -12 278 224 0 33 chr15 5824910 5825093 -79870661 + (TG)n Simple_repeat Simple_repeat 1 177 0 245 242 8 0 chr15 5825112 5825240 -79870514 + (TG)n Simple_repeat Simple_repeat 1 129 0 297 239 28 0 chr15 5825258 5825367 -79870387 + (TG)n Simple_repeat Simple_repeat 1 112 0 2354 66 0 7 chr15 5826683 5826985 -79868769 + AluY SINE Alu 1 300 -11 2746 9 0 0 chr15 5829610 5829948 -79865806 + L1HS LINE L1 5815 6152 -3 353 257 48 67 chr15 5829948 5830053 -79865701 + L1MDa LINE L1 2382 2517 -4056 181 125 0 50 chr15 5836904 5836944 -79858810 + MER5A DNA MER1_type 84 121 -68 660 255 11 21 chr15 5837300 5837488 -79858266 + MER5A DNA MER1_type 4 189 0 198 0 0 0 chr15 5839030 5839052 -79856702 + (GAGAA)n Simple_repeat Simple_repeat 4 25 0 2170 109 0 7 chr15 5839401 5839704 -79856050 - AluSx SINE Alu -11 301 1 1060 147 11 16 chr15 5839807 5839991 -79855763 - FRAM SINE Alu -1 175 1 343 202 12 36 chr15 5842113 5842197 -79853557 + L1MC/D LINE L1 5680 5761 -2047 232 294 24 8 chr15 5842327 5842453 -79853301 + (CACCC)n Simple_repeat Simple_repeat 3 130 0 279 283 81 30 chr15 5844139 5844238 -79851516 + MER5A DNA MER1_type 84 187 -2 212 214 18 36 chr15 5844302 5844358 -79851396 + L2 LINE L2 1861 1915 -1399 222 236 28 66 chr15 5844692 5844798 -79850956 + L2 LINE L2 2889 2990 -282 948 178 6 0 chr15 5846038 5846212 -79849542 - L1PA12 LINE L1 -4509 3072 2898 383 235 130 9 chr15 5846365 5846480 -79849274 - MIR SINE MIR -17 245 117 238 336 26 18 chr15 5846917 5847030 -79848724 + MIR SINE MIR 109 222 -40 2070 115 0 38 chr15 5848345 5848659 -79847095 + AluSx SINE Alu 1 302 -10 509 227 84 45 chr15 5848733 5848887 -79846867 - MER103 DNA DNA -2 164 5 825 194 0 0 chr15 5849338 5849518 -79846236 + (TG)n Simple_repeat Simple_repeat 1 180 0 180 279 162 0 chr15 5851027 5851095 -79844659 + L2 LINE L2 3184 3262 -10 303 344 29 70 chr15 5854522 5854763 -79840991 + HAL1 LINE L1 822 1052 -1455 698 176 80 75 chr15 5855088 5855239 -79840515 + L1MC5 LINE L1 3400 3549 -2597 1822 160 3 7 chr15 5855239 5855545 -79840209 + AluJo SINE Alu 1 305 -7 1851 122 7 53 chr15 5855550 5855854 -79839900 + AluSx SINE Alu 1 290 -22 698 176 80 75 chr15 5855854 5855935 -79839819 + L1MC5 LINE L1 3552 3639 -2507 1909 198 57 18 chr15 5855937 5856133 -79839621 + L1MC5 LINE L1 3770 3957 -2189 2501 65 0 3 chr15 5856133 5856441 -79839313 + AluY SINE Alu 1 307 -4 1909 198 57 18 chr15 5856441 5856733 -79839021 + L1MC5 LINE L1 3957 4277 -1869 3883 158 6 39 chr15 5857822 5858546 -79837208 - L1MD1 LINE L1 -3 6239 5540 1466 86 5 32 chr15 5858881 5859101 -79836653 - AluSg/x SINE Alu -12 298 85 3835 138 320 96 chr15 5859532 5860914 -79834840 - pTR5 LTR ERV1 -1 2437 745 2184 108 10 0 chr15 5860914 5861210 -79834544 + AluSx SINE Alu 10 308 -4 513 232 51 133 chr15 5861535 5861888 -79833866 - L1M4 LINE L1 -1768 4378 4055 2550 62 0 0 chr15 5862503 5862812 -79832942 + AluY SINE Alu 1 309 -2 1652 245 114 23 chr15 5862814 5863385 -79832369 - L1MEc LINE L1 -5731 665 43 715 129 20 0 chr15 5863681 5863806 -79831948 - AluSg/x SINE Alu 0 307 181 1225 183 40 5 chr15 5863906 5864317 -79831437 + L1MC5 LINE L1 5093 5526 -648 421 186 72 0 chr15 5864306 5864403 -79831351 + L1M3 LINE L1 5423 5526 -654 * 3361 177 36 7 chr15 5864392 5865122 -79830632 + L1MB8 LINE L1 5423 6173 -5 1146 175 0 28 chr15 5865176 5865387 -79830367 + MER2 DNA MER2_type 6 210 -135 2246 93 20 7 chr15 5865677 5865979 -79829775 - AluSx SINE Alu -6 306 1 333 266 21 50 chr15 5866919 5867060 -79828694 - MIR SINE MIR -39 169 32 223 119 30 30 chr15 5867702 5867769 -79827985 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 2217 84 3 3 chr15 5868029 5868371 -79827383 + AluSp SINE Alu 1 342 0 342 235 67 67 chr15 5868371 5868550 -79827204 + L1MC5 LINE L1 5774 5952 -1856 4034 128 44 39 chr15 5869060 5869384 -79826370 - L1PA16 LINE L1 -5 6161 5840 2494 74 0 0 chr15 5869384 5869683 -79826071 - AluY SINE Alu -12 299 1 4034 128 44 39 chr15 5869683 5870083 -79825671 - L1PA16 LINE L1 -326 5840 5433 828 204 95 36 chr15 5870139 5870443 -79825311 + L1MC5 LINE L1 6640 6961 -1000 246 32 0 0 chr15 5870528 5870559 -79825195 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2109 87 45 0 chr15 5870560 5870826 -79824928 - AluSg SINE Alu -32 278 1 1095 166 73 106 chr15 5870844 5871212 -79824542 - LTR37A LTR ERV1 -52 374 19 261 0 0 0 chr15 5871212 5871241 -79824513 + (T)n Simple_repeat Simple_repeat 1 29 0 262 333 21 0 chr15 5871313 5871409 -79824345 - MER31-int LTR ERV1 -735 4201 4104 2341 84 0 10 chr15 5871752 5872048 -79823706 - AluSg SINE Alu -15 295 3 1770 154 14 17 chr15 5874175 5874467 -79821287 + AluJb SINE Alu 21 311 -1 1036 220 130 43 chr15 5874605 5874951 -79820803 + MER92A LTR ERV1 37 412 0 2567 40 0 17 chr15 5875727 5876029 -79819725 - AluY SINE Alu -14 297 1 331 213 58 85 chr15 5876480 5876528 -79819226 + L1M4 LINE L1 2787 2835 -3311 2373 78 7 0 chr15 5876528 5876851 -79818903 + AluSx SINE Alu 1 325 0 331 213 58 85 chr15 5876851 5876988 -79818766 + L1M4 LINE L1 2835 2969 -3177 3760 226 70 8 chr15 5877218 5878195 -79817559 + L1PB1 LINE L1 6 1042 -5821 349 161 16 0 chr15 5878203 5878265 -79817489 + L1PB1 LINE L1 1094 1156 -5707 15296 188 15 8 chr15 5878270 5883749 -79812005 + L1PB1 LINE L1 1311 6866 -1 937 266 202 12 chr15 5884929 5885440 -79810314 + L1M4 LINE L1 3709 4316 -1830 2015 84 0 4 chr15 5885440 5885690 -79810064 + AluY SINE Alu 1 249 -62 255 31 0 0 chr15 5885843 5885875 -79809879 + (TG)n Simple_repeat Simple_repeat 1 32 0 825 171 39 54 chr15 5885928 5886111 -79809643 + MLT1A1 LTR MaLR 164 345 -20 1773 175 63 29 chr15 5886111 5886494 -79809260 - MSTD LTR MaLR 0 396 1 825 171 39 54 chr15 5886494 5886515 -79809239 + MLT1A1 LTR MaLR 345 365 0 2299 61 0 7 chr15 5889669 5889947 -79805807 + AluY SINE Alu 1 276 -35 215 91 0 23 chr15 5889947 5889991 -79805763 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 226 274 0 53 chr15 5890603 5890698 -79805056 - L1ME3A LINE L1 0 6170 6081 1488 259 61 13 chr15 5890829 5891307 -79804447 - L1ME3A LINE L1 -202 5968 5468 774 275 100 20 chr15 5891309 5891658 -79804096 + HAL1 LINE L1 1688 2064 -443 6000 239 67 32 chr15 5891676 5892216 -79803538 - L1ME3A LINE L1 -896 5250 4730 2132 119 3 0 chr15 5892216 5892502 -79803252 - AluSx SINE Alu -20 292 6 6000 239 67 32 chr15 5892502 5892590 -79803164 - L1ME3A LINE L1 -1416 4730 4647 2121 114 0 26 chr15 5892590 5892897 -79802857 - AluSq SINE Alu -14 299 1 6000 239 67 32 chr15 5892897 5894371 -79801383 - L1ME3A LINE L1 -1499 4647 3073 6374 84 10 18 chr15 5894378 5895152 -79800602 - L1PA8 LINE L1 0 6291 5528 2351 92 0 0 chr15 5895152 5895455 -79800299 + AluY SINE Alu 1 303 -8 6374 84 10 18 chr15 5895455 5895632 -79800122 - L1PA8 LINE L1 -763 5528 5351 819 133 63 0 chr15 5895610 5895768 -79799986 - L1MA7 LINE L1 -115 6176 6009 * 222 186 17 51 chr15 5896603 5896662 -79799092 + MIR SINE MIR 74 130 -78 5301 165 22 6 chr15 5896834 5897847 -79797907 - L1MB3 LINE L1 -1 6182 5150 243 176 44 59 chr15 5897936 5898004 -79797750 + MER96B DNA MER1_type? 109 175 0 1965 144 44 18 chr15 5898108 5898449 -79797305 - MLT1A1 LTR MaLR -15 350 1 1339 205 28 37 chr15 5898505 5898863 -79796891 + L1MB8 LINE L1 5825 6178 0 1487 176 89 110 chr15 5899288 5899725 -79796029 - LTR12 LTR ERV1 -234 480 53 233 235 0 0 chr15 5899725 5899776 -79795978 - LTR30 LTR ERV1 -670 52 2 359 303 118 11 chr15 5900126 5900304 -79795450 - MER117 DNA MER1_type 0 197 1 1213 245 109 75 chr15 5900595 5901207 -79794547 + L1ME3A LINE L1 5514 6146 -24 2098 137 0 0 chr15 5901253 5901560 -79794194 + AluSx SINE Alu 3 309 -3 1931 218 70 23 chr15 5902025 5902396 -79793358 + MER74B LTR ERVL 66 471 -151 2261 120 15 29 chr15 5902396 5902738 -79793016 + MER1B DNA MER1_type 1 337 0 1931 218 70 23 chr15 5902738 5902898 -79792856 + MER74B LTR ERVL 471 622 0 5931 213 5 9 chr15 5903499 5904802 -79790952 - L1 LINE L1 -1983 4163 2866 6926 42 1 2 chr15 5904802 5905654 -79790100 - L1P LINE L1 -973 5173 4323 321 255 140 32 chr15 5906173 5906197 -79789557 + L2 LINE L2 3099 3119 -153 2297 122 0 0 chr15 5906197 5906509 -79789245 - AluSx SINE Alu 0 312 1 321 255 140 32 chr15 5906509 5906641 -79789113 + L2 LINE L2 3119 3272 0 2936 54 8 3 chr15 5907179 5907549 -79788205 - L1PA8 LINE L1 -1 6171 5800 3123 206 93 18 chr15 5907567 5908328 -79787426 + MER21B LTR ERV1 20 837 -26 1920 127 22 0 chr15 5910575 5910850 -79784904 + AluJb SINE Alu 6 286 -26 685 260 142 31 chr15 5910866 5911154 -79784600 - MLT1I LTR MaLR -89 320 1 299 252 63 47 chr15 5911155 5911282 -79784472 + HAL1b LINE L1 386 514 -834 382 237 89 35 chr15 5911326 5911495 -79784259 + L1MCc LINE L1 25 202 -6221 563 247 17 23 chr15 5911528 5911702 -79784052 + L1MCc LINE L1 1469 1641 -5300 * 1283 236 73 45 chr15 5911700 5912082 -79783672 + L1M4 LINE L1 3791 4183 -1963 2923 155 37 41 chr15 5912084 5912626 -79783128 + MLT2B3 LTR ERVL 1 540 -14 1256 249 89 8 chr15 5912627 5913120 -79782634 + L1M4 LINE L1 4185 4717 -1429 2304 96 3 0 chr15 5914465 5914758 -79780996 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 5914882 5914910 -79780844 + AT_rich Low_complexity Low_complexity 1 28 0 206 360 0 22 chr15 5914938 5915027 -79780727 + L3b LINE CR1 1397 1483 -100 1760 148 3 25 chr15 5916293 5916576 -79779178 + AluJo SINE Alu 29 305 -7 1326 224 22 102 chr15 5916576 5917066 -79778688 + L1MB8 LINE L1 3482 3932 -2214 1125 213 87 8 chr15 5917075 5917442 -79778312 - L1M4 LINE L1 -816 5330 4935 * 3710 170 38 57 chr15 5917439 5917710 -79778044 + L1MB8 LINE L1 5368 5643 -535 328 109 0 0 chr15 5917710 5917756 -79777998 - MADE1 DNA Mariner 0 80 35 3710 170 38 57 chr15 5917756 5918240 -79777514 + L1MB8 LINE L1 5643 6152 -26 2145 111 3 14 chr15 5918252 5918549 -79777205 + AluY SINE Alu 1 294 -17 2175 104 60 11 chr15 5918549 5918896 -79776858 - MSTA LTR MaLR -64 364 1 235 250 31 0 chr15 5918945 5919009 -79776745 + MER63 DNA MER1_type 997 1062 0 1429 177 141 52 chr15 5919930 5919983 -79775771 + MSTD LTR MaLR 1 48 -348 2409 87 3 3 chr15 5919983 5920295 -79775459 + AluSx SINE Alu 1 312 0 1429 177 141 52 chr15 5920295 5920603 -79775151 + MSTD LTR MaLR 48 394 -2 244 306 20 10 chr15 5920695 5920793 -79774961 + MIR SINE MIR 156 254 -8 215 31 31 0 chr15 5920797 5920829 -79774925 + (CAT)n Simple_repeat Simple_repeat 1 33 0 208 226 38 0 chr15 5921299 5921352 -79774402 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 1445 170 4 61 chr15 5921681 5921958 -79773796 + AluJo SINE Alu 29 289 -23 1590 162 26 26 chr15 5921961 5922270 -79773484 - AluSx SINE Alu -3 309 1 289 225 0 42 chr15 5923508 5923579 -79772175 - L1MB8 LINE L1 -168 6010 5943 585 310 119 29 chr15 5923601 5924291 -79771463 + L1MC4a LINE L1 3341 4092 -2054 21 0 0 0 chr15 5925238 5925259 -79770495 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 5925505 5925534 -79770220 + AT_rich Low_complexity Low_complexity 1 29 0 551 271 78 53 chr15 5925536 5925857 -79769897 + L1MC4a LINE L1 5291 5619 -2189 211 213 53 53 chr15 5925909 5925984 -79769770 + L2 LINE L2 3231 3305 -8 341 248 41 92 chr15 5925984 5926014 -79769740 + L1MC4a LINE L1 5675 5705 -2103 2039 127 13 13 chr15 5926014 5926314 -79769440 + AluJb SINE Alu 4 303 -9 2307 79 0 26 chr15 5926314 5926618 -79769136 + AluSq SINE Alu 1 296 -17 341 248 41 92 chr15 5926618 5926804 -79768950 + L1MC4a LINE L1 5703 5881 -1927 411 21 0 0 chr15 5926877 5926925 -79768829 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 326 10 77 chr15 5927087 5927492 -79768262 + L1ME4a LINE L1 4456 4833 -1313 306 256 114 31 chr15 5928239 5928493 -79767261 + L1ME4a LINE L1 5119 5393 -753 592 261 84 28 chr15 5928549 5928798 -79766956 + L1ME4a LINE L1 5381 5643 -478 307 276 113 15 chr15 5928842 5928946 -79766808 + L1ME4a LINE L1 5741 5833 -288 2023 122 49 0 chr15 5928946 5929233 -79766521 + AluSx SINE Alu 1 301 -11 307 276 113 15 chr15 5929233 5929331 -79766423 + L1ME4a LINE L1 5833 5963 -158 30 89 0 0 chr15 5929446 5929525 -79766229 + AT_rich Low_complexity Low_complexity 1 79 0 1979 183 38 19 chr15 5929610 5930030 -79765724 - MSTA LTR MaLR 0 428 1 286 291 31 24 chr15 5930037 5930164 -79765590 - MIR3 SINE MIR -78 130 3 1449 102 69 5 chr15 5931337 5931553 -79764201 - MER30 DNA MER1_type 0 230 1 1322 72 17 17 chr15 5931587 5931768 -79763986 - MER30 DNA MER1_type -49 181 1 1391 223 113 46 chr15 5932745 5933328 -79762426 - L1MC5 LINE L1 -28 7933 7312 2310 83 17 0 chr15 5933357 5933646 -79762108 - AluSc SINE Alu -15 294 1 843 201 57 44 chr15 5933659 5933888 -79761866 - L1MC5 LINE L1 -722 7239 7008 1095 166 73 106 chr15 5934081 5934449 -79761305 + LTR37A LTR ERV1 19 374 -52 2109 87 45 0 chr15 5934467 5934733 -79761021 + AluSg SINE Alu 1 278 -32 213 65 0 0 chr15 5934734 5934765 -79760989 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 828 204 95 36 chr15 5934849 5935153 -79760601 - L1MC5 LINE L1 -1000 6961 6640 2896 127 23 21 chr15 5935209 5935680 -79760074 + L1PA14 LINE L1 5433 5904 -257 2423 157 26 28 chr15 5937711 5938137 -79757617 + MSTB LTR MaLR 1 425 -1 2237 154 24 0 chr15 5938240 5938623 -79757131 - L1MB3 LINE L1 0 6183 5792 207 0 0 0 chr15 5939953 5939976 -79755778 + (CA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr15 5941250 5941270 -79754484 + (CAT)n Simple_repeat Simple_repeat 3 22 0 971 188 36 5 chr15 5945369 5945561 -79750193 + MER82 DNA MER2_type 7 204 -449 1673 211 111 13 chr15 5945802 5945931 -79749823 + MER82 DNA MER2_type 227 342 -311 189 0 0 0 chr15 5945931 5945952 -79749802 + (CA)n Simple_repeat Simple_repeat 2 22 0 1673 211 111 13 chr15 5945952 5946211 -79749543 + MER82 DNA MER2_type 342 653 0 2178 131 0 3 chr15 5946634 5946939 -79748815 - AluSx SINE Alu -8 304 1 401 179 12 0 chr15 5948488 5948572 -79747182 + GA-rich Low_complexity Low_complexity 1 85 0 2378 76 3 0 chr15 5948881 5949171 -79746583 - AluY SINE Alu -17 294 4 2119 191 6 0 chr15 5949942 5950303 -79745451 + MLT1A1 LTR MaLR 3 365 0 2469 113 28 35 chr15 5951783 5952150 -79743604 - L1PA15 LINE L1 -14 6151 5786 2241 120 0 7 chr15 5952150 5952459 -79743295 - AluSx SINE Alu -5 307 1 2469 113 28 35 chr15 5952459 5952490 -79743264 - L1PA15 LINE L1 -379 5786 5756 1201 244 13 0 chr15 5952492 5952799 -79742955 + L1P LINE L1 2562 2872 -3274 5864 214 6 9 chr15 5952982 5954284 -79741470 - L1 LINE L1 -1983 4879 3582 7871 37 2 0 chr15 5954284 5955234 -79740520 - L1PA5 LINE L1 -973 5173 4222 7495 38 7 0 chr15 5955234 5956214 -79739540 + L1PA5 LINE L1 5169 6154 0 4806 139 51 38 chr15 5956228 5956698 -79739056 - L1PBa LINE L1 -3267 3595 3133 3192 75 49 5 chr15 5956698 5957082 -79738672 + MLT2A1 LTR ERVL 1 407 -37 221 0 35 0 chr15 5957082 5957111 -79738643 + (TA)n Simple_repeat Simple_repeat 2 31 0 3192 75 49 5 chr15 5957111 5957151 -79738603 + MLT2A1 LTR ERVL 407 444 0 4806 139 51 38 chr15 5957151 5958137 -79737617 - L1PBa LINE L1 -3729 3133 2132 286 172 65 32 chr15 5958243 5958336 -79737418 - L1ME4a LINE L1 -1 6120 6025 231 36 0 0 chr15 5958367 5958395 -79737359 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3977 66 15 11 chr15 5958395 5958925 -79736829 - LTR6B LTR ERV1 -26 532 1 4151 167 79 4 chr15 5958925 5959854 -79735900 - L1PBa LINE L1 -4728 2135 990 * 6004 147 11 11 chr15 5959849 5961124 -79734630 + L1PB1 LINE L1 4511 5793 -358 489 17 0 0 chr15 5961124 5961182 -79734572 + (TA)n Simple_repeat Simple_repeat 2 59 0 6004 147 11 11 chr15 5961182 5961541 -79734213 + L1PB1 LINE L1 5793 6150 -1 2411 88 0 0 chr15 5962722 5963016 -79732738 - AluSg SINE Alu -15 295 2 239 241 0 0 chr15 5963359 5963417 -79732337 + L1MB4 LINE L1 5688 5745 -2063 3796 90 43 2 chr15 5963519 5964051 -79731703 + MER41A LTR ERV1 1 554 0 4412 127 97 35 chr15 5965508 5966829 -79728925 - pTR5 LTR ERV1 0 2438 743 1947 144 6 41 chr15 5969510 5969568 -79726186 + L1MB4 LINE L1 5852 5911 -269 2257 91 37 0 chr15 5969568 5969866 -79725888 + AluSg SINE Alu 2 310 0 1947 144 6 41 chr15 5969866 5970148 -79725606 + L1MB4 LINE L1 5911 6180 0 26 0 0 0 chr15 5970477 5970503 -79725251 + AT_rich Low_complexity Low_complexity 1 26 0 987 315 120 42 chr15 5970891 5971859 -79723895 + L2 LINE L2 1705 2747 -567 900 333 53 5 chr15 5972077 5972542 -79723212 - L2 LINE L2 -189 3083 2590 367 279 83 59 chr15 5972774 5972978 -79722776 + L2 LINE L2 2287 2495 -819 2251 107 3 3 chr15 5973397 5973707 -79722047 - AluSx SINE Alu -2 310 1 1707 122 52 38 chr15 5974014 5974181 -79721573 - AluJo SINE Alu -21 291 117 234 0 0 0 chr15 5974181 5974207 -79721547 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 122 52 38 chr15 5974207 5974326 -79721428 - AluJo SINE Alu -195 117 1 3220 233 40 55 chr15 5976957 5977200 -79718554 + L1MB8 LINE L1 2839 3084 -3062 2259 109 0 0 chr15 5977200 5977504 -79718250 + AluSg1 SINE Alu 1 304 -5 3220 233 40 55 chr15 5977504 5977880 -79717874 + L1MB8 LINE L1 3084 3464 -2682 1920 154 3 22 chr15 5977880 5978191 -79717563 + AluJo SINE Alu 1 305 -7 3220 233 40 55 chr15 5978191 5978681 -79717073 + L1MB8 LINE L1 3464 3932 -2214 1151 215 87 8 chr15 5978690 5979057 -79716697 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 5979054 5979325 -79716429 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 5979325 5979371 -79716383 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 5979371 5979855 -79715899 + L1MB8 LINE L1 5643 6152 -26 2167 116 0 13 chr15 5979867 5980170 -79715584 + AluY SINE Alu 1 299 -12 232 115 77 0 chr15 5980170 5980222 -79715532 - MER44D DNA MER2_type -123 582 527 * 3971 123 15 2 chr15 5980218 5980874 -79714880 + MER72 LTR ERV1 9 722 0 547 134 229 0 chr15 5980874 5981003 -79714751 - MER44D DNA MER2_type -167 438 10 4184 45 16 10 chr15 5981501 5981988 -79713766 - LTR2B LTR ERV1 0 490 1 26 50 0 0 chr15 5983855 5983895 -79711859 + GC_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr15 5984955 5984992 -79710762 + AT_rich Low_complexity Low_complexity 1 37 0 325 314 38 0 chr15 5985434 5985539 -79710215 + MIR SINE MIR 35 143 -119 362 274 89 45 chr15 5985799 5985978 -79709776 + MIR SINE MIR 9 195 -67 411 264 139 79 chr15 5986696 5987246 -79708508 - L1ME2 LINE L1 -235 5929 5306 327 262 131 45 chr15 5987392 5987613 -79708141 - L1ME2 LINE L1 -1039 5107 4868 2315 104 0 0 chr15 5987707 5988006 -79707748 - AluSq SINE Alu -14 299 1 304 239 68 118 chr15 5988032 5988371 -79707383 - L1ME2 LINE L1 -1956 4190 3869 260 207 0 17 chr15 5988575 5988633 -79707121 - L1MC4 LINE L1 -2 8040 7984 1477 211 61 8 chr15 5988646 5989006 -79706748 - L1MC4 LINE L1 -399 7643 7265 1460 227 87 48 chr15 5989003 5989195 -79706559 - L1MC4a LINE L1 -830 6978 6795 * 2397 66 13 3 chr15 5989195 5989497 -79706257 - AluY SINE Alu -2 309 5 1460 227 87 48 chr15 5989497 5989829 -79705925 - L1MC4a LINE L1 -1013 6795 6439 237 271 171 11 chr15 5990051 5990320 -79705434 - L1ME2 LINE L1 -2499 3647 3336 4583 152 66 15 chr15 5990344 5991146 -79704608 - MER21A LTR ERV1 -2 929 87 1892 114 4 0 chr15 5991247 5991510 -79704244 + AluSx SINE Alu 47 310 -2 440 286 132 5 chr15 5992024 5992213 -79703541 + LTR50 LTR ERVL 1 213 -582 1929 284 77 24 chr15 5992341 5993323 -79702431 + L1M4 LINE L1 3331 4364 -1782 487 289 61 56 chr15 5993330 5993695 -79702059 + MLT1H1 LTR MaLR 1 377 -178 1019 266 61 66 chr15 5993695 5994254 -79701500 + LTR38 LTR ERV1 1 556 0 487 289 61 56 chr15 5994254 5994434 -79701320 + MLT1H1 LTR MaLR 377 555 0 1153 305 74 6 chr15 5994479 5995129 -79700625 + L1M4 LINE L1 4415 5113 -1033 258 329 0 0 chr15 5995209 5995285 -79700469 + Tigger3(Golem) DNA MER2_type 1 76 -2953 432 199 175 30 chr15 5995286 5995452 -79700302 + L2 LINE L2 2874 3063 -250 1378 164 72 34 chr15 5995473 5995736 -79700018 + Tigger3(Golem) DNA MER2_type 2756 3028 -1 222 171 0 0 chr15 5995737 5995778 -79699976 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1869 152 10 7 chr15 5995851 5996148 -79699606 + AluJb SINE Alu 1 298 -14 1723 161 65 6 chr15 5996149 5996472 -79699282 + L1PA16 LINE L1 5820 6161 -5 1292 246 32 61 chr15 5996982 5997160 -79698594 - L1MC4a LINE L1 -1856 5952 5770 2214 88 3 0 chr15 5997160 5997490 -79698264 - AluSp SINE Alu 0 331 1 1292 246 32 61 chr15 5997490 5997752 -79698002 - L1MC4a LINE L1 -2038 5770 5523 2389 84 0 10 chr15 5998048 5998358 -79697396 + AluSg SINE Alu 2 308 -2 229 82 20 61 chr15 5998620 5998669 -79697085 - L1MB3 LINE L1 0 6183 6137 2344 152 2 25 chr15 5998677 5999079 -79696675 - L1MB3 LINE L1 0 6183 5791 238 254 34 0 chr15 5999120 5999179 -79696575 + L1M4 LINE L1 73 133 -6409 772 256 13 34 chr15 5999211 5999445 -79696309 + L1M4 LINE L1 829 1057 -5485 1770 147 24 53 chr15 5999472 5999813 -79695941 + MER67A LTR ERV1 86 416 -127 782 150 0 0 chr15 5999815 5999928 -79695826 + AluJb SINE Alu 1 113 -199 204 40 0 0 chr15 5999929 5999954 -79695800 + (TA)n Simple_repeat Simple_repeat 1 25 0 814 181 0 0 chr15 5999993 6000131 -79695623 + MER67A LTR ERV1 406 543 0 1253 214 47 126 chr15 6000131 6000701 -79695053 + L1M4 LINE L1 3907 4431 -2213 378 265 123 24 chr15 6000705 6000916 -79694838 + L1MC5 LINE L1 7701 7932 -29 1394 175 8 16 chr15 6001261 6001513 -79694241 + AluJo SINE Alu 39 288 -24 515 257 7 29 chr15 6001528 6001664 -79694090 + FLAM_A SINE Alu 1 133 0 594 241 123 44 chr15 6001675 6002218 -79693536 + L1ME3A LINE L1 2677 3262 -2884 628 280 88 18 chr15 6002474 6002803 -79692951 + L1ME3A LINE L1 5614 5965 -199 231 274 0 53 chr15 6002938 6003033 -79692721 + L1ME3A LINE L1 6081 6170 0 376 331 20 0 chr15 6003113 6003264 -79692490 + L1ME LINE L1 5479 5632 -538 287 283 18 26 chr15 6003349 6003462 -79692292 - MLT1H LTR MaLR -311 238 127 2337 102 0 0 chr15 6003824 6004118 -79691636 - AluSg SINE Alu -15 295 2 1991 170 50 31 chr15 6004143 6004685 -79691069 + MLT2A2 LTR ERVL 1 554 0 719 181 0 0 chr15 6004685 6004801 -79690953 + Tigger7 DNA MER2_type 2371 2486 -1 647 289 41 18 chr15 6004816 6005034 -79690720 - MIR SINE MIR -32 230 8 197 77 0 0 chr15 6005202 6005228 -79690526 + L2 LINE L2 3207 3232 -40 2020 210 109 16 chr15 6005309 6005805 -79689949 - MER34 LTR ERV1 0 542 1 533 281 141 19 chr15 6007156 6007426 -79688328 + MLT1K LTR MaLR 282 584 -4 2229 110 7 0 chr15 6007681 6007980 -79687774 + AluSx SINE Alu 1 301 -11 499 140 11 43 chr15 6008056 6008149 -79687605 - MER1B DNA MER1_type 0 339 250 * 1228 133 16 0 chr15 6008146 6008334 -79687420 - MER1B DNA MER1_type -106 191 1 303 306 83 0 chr15 6008569 6008677 -79687077 + HAL1b LINE L1 83 199 -1149 326 299 0 0 chr15 6009332 6009429 -79686325 - L1M4 LINE L1 -1258 4888 4792 1013 227 45 39 chr15 6009429 6009759 -79685995 - MLT1B LTR MaLR 0 390 59 1181 164 82 39 chr15 6010112 6010344 -79685410 + Tigger3(Golem) DNA MER2_type 2786 3027 -2 222 171 0 0 chr15 6010345 6010386 -79685368 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1935 151 10 6 chr15 6010459 6010770 -79684984 + AluJb SINE Alu 1 312 0 1524 234 75 26 chr15 6010798 6011102 -79684652 + L1ME3 LINE L1 5346 5685 -477 2244 102 0 0 chr15 6011102 6011385 -79684369 + AluSx SINE Alu 6 288 -24 1524 234 75 26 chr15 6011385 6011571 -79684183 + L1ME3 LINE L1 5685 5860 -302 999 271 106 31 chr15 6011638 6012189 -79683565 + L2 LINE L2 2718 3310 -3 241 225 69 106 chr15 6012293 6012453 -79683301 - HAL1 LINE L1 -1814 693 540 521 286 77 46 chr15 6012497 6012822 -79682932 + MLT1I LTR MaLR 68 402 -7 471 333 48 33 chr15 6012896 6013293 -79682461 - HAL1 LINE L1 -2057 450 48 294 179 0 0 chr15 6013790 6013846 -79681908 + CT-rich Low_complexity Low_complexity 3 58 0 264 59 0 0 chr15 6013871 6013905 -79681849 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2190 123 10 0 chr15 6013905 6014213 -79681541 - AluSq SINE Alu -1 312 2 360 235 0 0 chr15 6014724 6014792 -79680962 - MLT1K LTR MaLR -15 573 506 2389 44 14 30 chr15 6014792 6015089 -79680665 - AluY SINE Alu -19 292 1 2248 196 97 6 chr15 6016983 6017487 -79678267 - MER44D DNA MER2_type 0 605 1 1172 171 96 32 chr15 6017509 6017760 -79677994 + MLT2D LTR ERVL 146 412 -2 443 215 114 7 chr15 6017764 6017913 -79677841 - L2 LINE L2 -697 2617 2453 456 112 2 17 chr15 6018232 6018305 -79677449 - MLT1C LTR MaLR 0 467 406 437 241 0 11 chr15 6018399 6018486 -79677268 + MER58 DNA MER1_type 5 90 -125 385 285 10 57 chr15 6018550 6018743 -79677011 + L1MEc LINE L1 638 821 -5575 259 267 70 64 chr15 6018821 6018993 -79676761 + L1MC5 LINE L1 6876 7048 -913 989 232 89 36 chr15 6019012 6019404 -79676350 + L1MC5 LINE L1 7112 7524 -437 2105 265 85 21 chr15 6019484 6020506 -79675248 + L1M4 LINE L1 2670 3756 -2390 286 250 40 0 chr15 6020759 6020835 -79674919 - MLT1B LTR MaLR 0 530 452 548 212 147 41 chr15 6021083 6021328 -79674426 - MLT1B LTR MaLR -118 272 2 924 218 28 40 chr15 6021349 6021514 -79674240 - L1M4 LINE L1 -1373 4773 4611 2426 75 0 0 chr15 6021514 6021806 -79673948 - AluSc SINE Alu -17 292 1 924 218 28 40 chr15 6021806 6021892 -79673862 - L1M4 LINE L1 -1535 4611 4525 789 283 78 44 chr15 6023489 6023899 -79671855 + MLT1L LTR MaLR 184 607 -8 2229 127 51 25 chr15 6024243 6024598 -79671156 + THE1B LTR MaLR 1 364 0 452 169 0 0 chr15 6025488 6025559 -79670195 - AluJ/FRAM SINE Alu -10 302 232 1842 124 0 11 chr15 6025583 6025849 -79669905 - AluSq SINE Alu -50 263 1 1355 212 49 61 chr15 6026351 6026742 -79669012 + MLT1B LTR MaLR 1 386 -4 1536 116 19 0 chr15 6026976 6027191 -79668563 + AluSg/x SINE Alu 83 301 -11 923 192 72 5 chr15 6027507 6027715 -79668039 + MER34 LTR ERV1 1 222 -320 1096 171 35 0 chr15 6027777 6027976 -79667778 + MER34 LTR ERV1 337 542 0 2125 117 0 32 chr15 6028297 6028605 -79667149 + AluSx SINE Alu 1 298 -14 2027 132 0 17 chr15 6030209 6030505 -79665249 + AluSx SINE Alu 1 291 -21 702 246 116 78 chr15 6030665 6031188 -79664566 + L1M4 LINE L1 3796 4297 -1849 14937 125 46 4 chr15 6031188 6033509 -79662245 + Tigger1 DNA MER2_type 2 2418 0 702 246 116 78 chr15 6033509 6033570 -79662184 + L1M4 LINE L1 4297 4354 -1792 2205 115 3 0 chr15 6033570 6033866 -79661888 + AluSx SINE Alu 1 297 -15 702 246 116 78 chr15 6033866 6034583 -79661171 + L1M4 LINE L1 4354 5214 -932 23 68 0 0 chr15 6034906 6034950 -79660804 + AT_rich Low_complexity Low_complexity 1 44 0 564 226 56 78 chr15 6035212 6035518 -79660236 + L1MC5 LINE L1 7610 7908 -53 875 258 113 19 chr15 6035848 6036370 -79659384 + L2 LINE L2 2744 3313 0 1671 287 123 21 chr15 6036494 6037293 -79658461 - L2 LINE L2 -543 2771 1892 500 117 0 0 chr15 6037860 6037937 -79657817 - AluJ/FRAM SINE Alu -4 308 232 1916 105 8 4 chr15 6037961 6038219 -79657535 - AluSq SINE Alu -50 263 5 1718 158 54 3 chr15 6038223 6038558 -79657196 - L1MB3 LINE L1 -40 6143 5792 933 181 0 18 chr15 6039464 6039630 -79656124 + Tigger1 DNA MER2_type 1 163 -2255 * 1100 167 0 77 chr15 6039611 6039659 -79656095 + Tigger1 DNA MER2_type 2202 2252 -166 2577 62 0 0 chr15 6039659 6039964 -79655790 - AluY SINE Alu -6 305 1 1100 167 0 77 chr15 6039964 6040149 -79655605 + Tigger1 DNA MER2_type 2252 2417 -1 1163 265 77 20 chr15 6040915 6041380 -79654374 + L1MC3 LINE L1 1 839 -5583 9450 166 104 77 chr15 6041398 6042712 -79653042 + L1MC3 LINE L1 877 2155 -6425 2272 101 0 7 chr15 6042712 6043018 -79652736 + AluSg SINE Alu 1 304 -6 9450 166 104 77 chr15 6043018 6043114 -79652640 + L1MC3 LINE L1 2155 2247 -6333 1664 80 9 0 chr15 6043114 6043338 -79652416 + L1PA10 LINE L1 5939 6164 -4 9450 166 104 77 chr15 6043338 6043492 -79652262 + L1MC3 LINE L1 2247 2395 -6185 1480 166 50 0 chr15 6043492 6043775 -79651979 - L1MA8 LINE L1 -4 6287 5991 9450 166 104 77 chr15 6043775 6043828 -79651926 + L1MC3 LINE L1 2395 2445 -6135 2637 161 11 25 chr15 6043828 6044299 -79651455 + MER4C LTR ERV1 1 464 -1 9450 166 104 77 chr15 6044299 6044415 -79651339 + L1MC3 LINE L1 2445 2556 -6024 3570 181 106 16 chr15 6044415 6045206 -79650548 + MER21B LTR ERV1 1 862 -1 9450 166 104 77 chr15 6045206 6045451 -79650303 + L1MC3 LINE L1 2556 2793 -5787 1366 201 73 4 chr15 6045451 6045725 -79650029 - AluJo SINE Alu -19 293 1 9450 166 104 77 chr15 6045725 6048651 -79647103 + L1MC3 LINE L1 2793 5640 -2940 2305 82 0 20 chr15 6048651 6048956 -79646798 + AluY SINE Alu 1 299 -12 9450 166 104 77 chr15 6048956 6050240 -79645514 + L1MC3 LINE L1 5640 6888 -1692 1123 179 159 14 chr15 6050240 6050426 -79645328 - MER44D DNA MER2_type -1882 609 451 2455 70 0 3 chr15 6050426 6050724 -79645030 + AluY SINE Alu 1 297 -14 1123 179 159 14 chr15 6050724 6050833 -79644921 - MER44D DNA MER2_type -2040 451 1 9450 166 104 77 chr15 6050833 6051252 -79644502 + L1MC3 LINE L1 6888 7294 -1286 397 239 9 44 chr15 6051252 6051365 -79644389 + MLT1F1 LTR MaLR 25 133 -434 9450 166 104 77 chr15 6051365 6051502 -79644252 + L1MC3 LINE L1 7294 7426 -1154 2097 104 0 42 chr15 6051502 6051810 -79643944 + AluSc SINE Alu 1 295 -14 9450 166 104 77 chr15 6051810 6052247 -79643507 + L1MC3 LINE L1 7426 8580 0 2339 90 3 0 chr15 6054023 6054324 -79641430 + AluSp SINE Alu 1 302 -11 2338 177 20 22 chr15 6055041 6055499 -79640255 + MLT1C LTR MaLR 1 457 -10 489 241 111 128 chr15 6055999 6056560 -79639194 + MLT1G LTR MaLR 40 590 0 2541 62 0 3 chr15 6057205 6057509 -79638245 + AluY SINE Alu 1 303 -8 1903 168 3 0 chr15 6057659 6057957 -79637797 - AluJb SINE Alu -13 299 1 551 240 120 5 chr15 6059044 6059244 -79636510 - MIR SINE MIR -19 243 21 320 310 26 9 chr15 6059233 6059346 -79636408 + MIR SINE MIR 46 160 -102 * 1110 71 0 0 chr15 6059662 6059802 -79635952 + AluSg/x SINE Alu 173 312 0 201 325 44 26 chr15 6062485 6062599 -79633155 - MIR3 SINE MIR -87 121 6 288 239 11 34 chr15 6062603 6062691 -79633063 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 679 312 98 21 chr15 6063757 6064187 -79631567 - L1MC/D LINE L1 -2069 5739 5277 21 0 0 0 chr15 6064266 6064287 -79631467 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 178 48 chr15 6064346 6064525 -79631229 + L1MC4a LINE L1 5795 5949 -1859 2067 153 43 85 chr15 6064525 6065008 -79630746 + MLT2C2 LTR ERVL 1 463 -1 309 258 178 48 chr15 6065008 6065165 -79630589 + L1MC4a LINE L1 5949 6175 -1633 351 96 0 0 chr15 6066263 6066315 -79629439 + (CA)n Simple_repeat Simple_repeat 2 53 0 566 313 82 0 chr15 6067242 6067450 -79628304 - MIR SINE MIR -20 242 18 1354 205 85 3 chr15 6068510 6068670 -79627084 - AluJo SINE Alu -6 306 160 180 0 0 0 chr15 6068670 6068690 -79627064 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1354 205 85 3 chr15 6068690 6068812 -79626942 - AluJo SINE Alu -152 160 1 289 278 22 0 chr15 6069492 6069582 -79626172 - L2 LINE L2 0 3313 3222 1843 104 4 19 chr15 6070995 6071264 -79624490 + AluSx SINE Alu 39 303 -9 204 40 0 0 chr15 6071267 6071292 -79624462 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 464 310 154 16 chr15 6071443 6071814 -79623940 - L1M4 LINE L1 -2579 3567 3146 2169 107 10 0 chr15 6072089 6072379 -79623375 + AluSx SINE Alu 5 297 -15 1693 156 39 67 chr15 6072438 6072796 -79622958 - MER7A DNA MER2_type 0 346 1 260 224 0 141 chr15 6072992 6073063 -79622691 - MIR SINE MIR 0 262 183 1561 148 50 44 chr15 6073063 6073361 -79622393 - AluJo SINE Alu -8 304 5 1814 177 0 3 chr15 6073367 6073661 -79622093 - AluJo SINE Alu -19 293 1 260 224 0 141 chr15 6073661 6073738 -79622016 - MIR SINE MIR -84 178 129 32 26 0 0 chr15 6074565 6074604 -79621150 + AT_rich Low_complexity Low_complexity 1 39 0 240 235 10 49 chr15 6074844 6074860 -79620894 + (TATG)n Simple_repeat Simple_repeat 3 18 -82 198 0 0 0 chr15 6074860 6074882 -79620872 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 240 235 10 49 chr15 6074882 6074967 -79620787 + (TATG)n Simple_repeat Simple_repeat 18 100 0 197 329 24 0 chr15 6074972 6075057 -79620697 - MIR SINE MIR -8 254 168 200 308 11 11 chr15 6075115 6075206 -79620548 - MIR SINE MIR -74 188 98 335 272 68 0 chr15 6075207 6075310 -79620444 - MIR SINE MIR -90 172 63 2580 172 42 22 chr15 6075360 6075865 -79619889 + MLT2B2 LTR ERVL 1 515 0 909 263 211 12 chr15 6076309 6076735 -79619019 + LTR33 LTR ERVL 3 513 -8 335 324 0 0 chr15 6077455 6077560 -79618194 + L1ME2 LINE L1 6038 6142 -22 309 215 15 0 chr15 6077663 6077728 -79618026 + L1MC4 LINE L1 6638 6703 -1339 2613 62 3 0 chr15 6077729 6078038 -79617716 - AluY SINE Alu -1 310 1 710 321 105 24 chr15 6078076 6078970 -79616784 + L1ME3A LINE L1 4401 5367 -779 2478 44 13 32 chr15 6078989 6079305 -79616449 + AluY SINE Alu 1 310 -1 646 310 39 18 chr15 6079433 6079814 -79615940 + L1ME3A LINE L1 5557 5951 -213 28 0 0 0 chr15 6080026 6080054 -79615700 + AT_rich Low_complexity Low_complexity 1 28 0 2113 114 0 23 chr15 6080845 6081144 -79614610 - AluSg SINE Alu -18 292 1 2235 124 3 3 chr15 6083801 6084108 -79611646 - AluSx SINE Alu -5 307 1 189 276 216 17 chr15 6085703 6085884 -79609870 + MIR SINE MIR 19 235 -27 27 0 0 0 chr15 6086154 6086181 -79609573 + AT_rich Low_complexity Low_complexity 1 27 0 3549 123 26 9 chr15 6086181 6086680 -79609074 - L1MC1 LINE L1 0 6333 5821 2073 129 3 0 chr15 6086680 6086967 -79608787 - AluSx SINE Alu -4 308 21 3549 123 26 9 chr15 6086967 6087045 -79608709 - L1MC1 LINE L1 -512 5821 5746 2175 118 0 3 chr15 6087522 6087810 -79607944 - AluSx SINE Alu -25 287 1 1108 221 79 25 chr15 6087856 6088173 -79607581 - L1ME1 LINE L1 -5 6161 5828 4337 238 43 44 chr15 6088418 6089477 -79606277 + L1M4 LINE L1 1 1060 -5586 1984 143 3 20 chr15 6089477 6089778 -79605976 + AluSx SINE Alu 1 296 -16 4337 238 43 44 chr15 6089778 6090033 -79605721 + L1M4 LINE L1 1060 1314 -5332 1827 161 0 30 chr15 6090033 6090337 -79605417 + AluJo SINE Alu 1 295 -17 4337 238 43 44 chr15 6090337 6091037 -79604717 + L1M4 LINE L1 1314 2018 -4628 1458 168 183 40 chr15 6091142 6091542 -79604212 + MSTB2 LTR MaLR 1 457 0 987 206 78 5 chr15 6091542 6091896 -79603858 + L1M4 LINE L1 2588 2970 -3674 390 310 110 0 chr15 6092039 6092194 -79603560 - MER5B DNA MER1_type -4 174 3 315 260 48 19 chr15 6092202 6092306 -79603448 + MIR SINE MIR 13 119 -143 272 26 0 26 chr15 6092466 6092504 -79603250 + (CAT)n Simple_repeat Simple_repeat 3 39 0 396 0 0 0 chr15 6092787 6092831 -79602923 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 320 100 7 chr15 6093110 6093349 -79602405 + L1ME4a LINE L1 904 1172 -4947 255 103 0 0 chr15 6093349 6093388 -79602366 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 241 320 100 7 chr15 6093388 6093417 -79602337 + L1ME4a LINE L1 1172 1197 -4922 2659 148 11 25 chr15 6093544 6093983 -79601771 + Tigger2a DNA MER2_type 1 433 -1 237 340 10 0 chr15 6094151 6094251 -79601503 + L1ME4a LINE L1 4721 4821 -1308 311 303 99 36 chr15 6094310 6094531 -79601223 + L1ME4a LINE L1 4889 5123 -1006 215 30 0 30 chr15 6094593 6094626 -79601128 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 275 269 0 25 chr15 6094994 6095113 -79600641 + T-rich Low_complexity Low_complexity 5 120 0 511 254 78 54 chr15 6095236 6095571 -79600183 + L1ME4a LINE L1 5762 6104 0 1174 182 43 38 chr15 6095653 6096000 -79599754 - L1MEc LINE L1 -4176 2220 1872 620 246 77 49 chr15 6095984 6096374 -79599380 - L1MEc LINE L1 -4993 1403 1003 * 2124 273 49 5 chr15 6096415 6097002 -79598752 - L1MEc LINE L1 -5578 818 206 942 282 59 17 chr15 6097010 6097297 -79598457 + ERVL LTR ERVL 1341 1639 -4125 261 0 0 0 chr15 6097981 6098010 -79597744 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 306 81 62 chr15 6098732 6098965 -79596789 - L2 LINE L2 -557 2757 2512 2171 110 3 0 chr15 6098965 6099285 -79596469 + AluSg SINE Alu 1 321 0 184 306 81 62 chr15 6099285 6099435 -79596319 - L2 LINE L2 -802 2512 2366 183 263 53 18 chr15 6099495 6099552 -79596202 + MIR3 SINE MIR 10 68 -140 1802 189 39 8 chr15 6099802 6100162 -79595592 + MLT2D LTR ERVL 3 373 -41 225 246 29 0 chr15 6100162 6100231 -79595523 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 224 0 0 chr15 6100233 6100291 -79595463 + MLT2D LTR ERVL 455 512 -8 2259 89 3 7 chr15 6101357 6101648 -79594106 + AluSg1 SINE Alu 14 303 -6 1156 101 0 0 chr15 6102295 6102444 -79593310 + AluSg/x SINE Alu 149 297 -15 303 177 302 10 chr15 6105666 6105762 -79589992 + MLT1E1 LTR MaLR 2 125 -529 3985 166 26 35 chr15 6105851 6106633 -79589121 + LTR1 LTR ERV1 11 785 0 574 225 0 0 chr15 6106633 6106744 -79589010 + MLT1E1 LTR MaLR 537 647 -7 828 201 65 15 chr15 6106747 6106946 -79588808 + MLT1A2 LTR MaLR 1 209 -165 4494 29 0 0 chr15 6106966 6107487 -79588267 - L1PA5 LINE L1 -1795 4351 3831 8650 38 7 2 chr15 6107487 6109292 -79586462 + L1PA5 LINE L1 4342 6151 -3 761 200 33 7 chr15 6109338 6109488 -79586266 + MLT1A2 LTR MaLR 237 390 0 317 185 169 23 chr15 6111840 6111970 -79583784 + Charlie4a DNA MER1_type 251 399 -109 2395 80 0 13 chr15 6111981 6112294 -79583460 - AluY SINE Alu -2 309 1 1098 60 0 8 chr15 6112295 6112428 -79583326 - AluY SINE Alu -179 132 1 447 125 0 0 chr15 6112436 6112500 -79583254 + Charlie4a DNA MER1_type 408 471 -37 583 274 81 62 chr15 6112537 6113224 -79582530 - L1MEd LINE L1 -4682 1628 871 475 290 38 27 chr15 6114144 6114468 -79581286 + L1M4 LINE L1 4318 4657 -1489 3456 162 89 60 chr15 6114719 6115049 -79580705 - L1MB3 LINE L1 -1 6182 5863 2392 72 10 7 chr15 6115049 6115353 -79580401 - AluY SINE Alu -6 305 1 3456 162 89 60 chr15 6115353 6115682 -79580072 - L1MB3 LINE L1 -320 5863 5545 1964 142 6 19 chr15 6115682 6115993 -79579761 - AluJb SINE Alu 0 312 6 3456 162 89 60 chr15 6115993 6116131 -79579623 - L1MB3 LINE L1 -638 5545 5413 2510 139 39 24 chr15 6116131 6116599 -79579155 - L1MA9 LINE L1 -3 6309 5835 3456 162 89 60 chr15 6116599 6116998 -79578756 - L1MB3 LINE L1 -770 5413 4931 21 57 0 0 chr15 6116999 6117034 -79578720 + AT_rich Low_complexity Low_complexity 1 35 0 2191 112 3 16 chr15 6117270 6117574 -79578180 + AluSx SINE Alu 1 300 -12 2170 113 0 0 chr15 6118607 6118915 -79576839 + AluSx SINE Alu 1 308 0 237 303 37 41 chr15 6118919 6118932 -79576822 + L1MC4a LINE L1 4123 4135 -2011 1947 221 94 29 chr15 6118932 6119546 -79576208 + MLT1E1 LTR MaLR 1 654 0 237 303 37 41 chr15 6119546 6119750 -79576004 + L1MC4a LINE L1 4135 4339 -1807 2512 131 52 24 chr15 6119751 6120076 -79575678 - Tigger2a DNA MER2_type -2275 433 92 195 42 0 0 chr15 6120076 6120100 -79575654 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2512 131 52 24 chr15 6120100 6120193 -79575561 - Tigger2a DNA MER2_type -2616 92 3 403 299 125 5 chr15 6120196 6120380 -79575374 - MIR SINE MIR -7 255 50 253 294 52 0 chr15 6120660 6120813 -79574941 + L1MC4a LINE L1 4883 5043 -1103 330 316 73 38 chr15 6121456 6121884 -79573870 + L1MC4a LINE L1 5260 5706 -415 285 270 98 23 chr15 6121905 6122079 -79573675 + L1MC4a LINE L1 5751 5937 -1871 219 139 0 0 chr15 6122417 6122453 -79573301 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 81 0 0 chr15 6122458 6122495 -79573259 + (TG)n Simple_repeat Simple_repeat 2 38 0 1783 159 22 0 chr15 6122501 6122777 -79572977 - AluJb SINE Alu -30 282 1 287 292 30 77 chr15 6125177 6125274 -79570480 + L2 LINE L2 2613 2700 -614 2468 90 0 0 chr15 6125274 6125575 -79570179 + AluSx SINE Alu 1 301 -11 287 292 30 77 chr15 6125575 6125645 -79570109 + L2 LINE L2 2700 2772 -542 1950 131 0 24 chr15 6126452 6126743 -79569011 + AluSx SINE Alu 21 304 -8 23 33 0 0 chr15 6126743 6126773 -79568981 + AT_rich Low_complexity Low_complexity 1 30 0 477 257 129 83 chr15 6126834 6127201 -79568553 - HAL1 LINE L1 -115 2392 1999 1978 194 6 0 chr15 6127201 6127547 -79568207 - MER7A DNA MER2_type 0 346 1 477 257 129 83 chr15 6127547 6127627 -79568127 - HAL1 LINE L1 -508 1999 1924 437 228 71 16 chr15 6127628 6127812 -79567942 + HAL1 LINE L1 1716 1909 -598 1805 106 14 48 chr15 6127855 6128147 -79567607 - AluSx SINE Alu -30 282 1 318 319 200 0 chr15 6128153 6128338 -79567416 - HAL1 LINE L1 -788 1719 1498 296 254 101 63 chr15 6128341 6128530 -79567224 - L2 LINE L2 -10 3303 3108 248 255 134 34 chr15 6128703 6128942 -79566812 - HAL1 LINE L1 -1171 1336 1074 343 280 99 55 chr15 6128945 6129262 -79566492 - L1MC4 LINE L1 -27 8015 7556 2125 89 64 0 chr15 6129511 6129793 -79565961 - AluSq SINE Alu -13 300 1 806 159 8 0 chr15 6129796 6129928 -79565826 - FLAM_A SINE Alu 0 133 1 1066 282 94 54 chr15 6130849 6130957 -79564797 - L1ME3A LINE L1 -297 5873 5771 2386 78 3 0 chr15 6130957 6131250 -79564504 - AluSg SINE Alu -16 294 1 1066 282 94 54 chr15 6131250 6131972 -79563782 - L1ME3A LINE L1 -399 5771 4996 855 251 119 52 chr15 6131982 6132687 -79563067 - L1ME3A LINE L1 -1197 4949 4031 704 284 163 34 chr15 6132744 6133728 -79562026 - L1ME3A LINE L1 -2734 3412 2302 26323 31 6 0 chr15 6133930 6137844 -79557910 + L1PA4 LINE L1 2252 6175 0 262 280 128 0 chr15 6138496 6138621 -79557133 - MER117 DNA MER1_type 0 197 57 315 268 85 20 chr15 6139360 6139628 -79556126 + L1M3d LINE L1 909 1187 -4704 396 251 144 46 chr15 6139820 6140159 -79555595 + L1MEc LINE L1 1704 1991 -4549 528 273 16 44 chr15 6140159 6140342 -79555412 + HAL1 LINE L1 138 315 -2192 1998 212 75 21 chr15 6140350 6140869 -79554885 - LTR55 LTR ERV -1 547 1 1042 248 234 18 chr15 6141079 6141745 -79554009 + HAL1 LINE L1 1671 2480 -27 2401 98 0 6 chr15 6142153 6142468 -79553286 + AluSq SINE Alu 1 313 0 2140 70 10 37 chr15 6143674 6143973 -79551781 + AluY SINE Alu 1 291 -20 2835 154 90 47 chr15 6144109 6144666 -79551088 - LTR12 LTR ERV1 -133 581 1 2165 103 3 31 chr15 6145184 6145504 -79550250 - AluY SINE Alu 0 311 1 223 224 21 35 chr15 6146134 6146277 -79549477 + (TTAA)n Simple_repeat Simple_repeat 4 144 0 2148 159 118 25 chr15 6147538 6147978 -79547776 - MLT1D LTR MaLR -2 503 23 2057 122 0 3 chr15 6148388 6148682 -79547072 - AluSx SINE Alu -19 293 1 221 360 0 10 chr15 6149128 6149228 -79546526 - L3 LINE CR1 -633 944 846 588 192 0 34 chr15 6149228 6149405 -79546349 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1554 205 3 0 chr15 6149405 6149688 -79546066 - AluJb SINE Alu -28 284 1 333 283 125 18 chr15 6150370 6150642 -79545112 + L2 LINE L2 2986 3286 -27 1093 111 0 26 chr15 6150666 6150842 -79544912 + AluSg/x SINE Alu 134 305 0 217 265 94 65 chr15 6151237 6151407 -79544347 - MIR SINE MIR -42 220 46 50 0 0 0 chr15 6151604 6151654 -79544100 + AT_rich Low_complexity Low_complexity 1 50 0 302 222 12 0 chr15 6155822 6155903 -79539851 - L1MC4 LINE L1 -1346 6696 6615 347 196 11 76 chr15 6155969 6156061 -79539693 - MER81 DNA DNA -2 112 27 1243 196 0 14 chr15 6158469 6158689 -79537065 + MER101B LTR ERV1 1 217 -353 765 214 22 45 chr15 6159024 6159202 -79536552 - MER82 DNA MER2_type -472 181 8 2362 163 216 161 chr15 6159208 6159452 -79536302 + L1MD3 LINE L1 6659 6888 -1107 444 19 0 0 chr15 6159452 6159505 -79536249 + (CA)n Simple_repeat Simple_repeat 2 54 0 2362 163 216 161 chr15 6159505 6159874 -79535880 + L1MD3 LINE L1 6888 7235 -760 604 230 36 7 chr15 6159874 6160013 -79535741 + MLT1A1 LTR MaLR 6 148 -419 2362 163 216 161 chr15 6160013 6160429 -79535325 + L1MD3 LINE L1 7235 7891 -104 2787 150 27 16 chr15 6161079 6161566 -79534188 + L1MB3 LINE L1 5584 6075 -108 228 299 141 4 chr15 6161968 6162202 -79533552 + L2 LINE L2 2138 2403 -911 589 250 42 32 chr15 6163732 6163979 -79531775 - MER4C LTR ERV1 0 597 325 948 95 7 7 chr15 6164309 6164446 -79531308 + MLT1A1 LTR MaLR 1 137 -228 3785 194 70 36 chr15 6164468 6165292 -79530462 + MER21B LTR ERV1 12 863 0 1229 164 26 17 chr15 6165302 6165533 -79530221 + MLT1A1 LTR MaLR 133 365 0 386 291 94 24 chr15 6165533 6165811 -79529943 + MLT1L LTR MaLR 57 461 -154 1365 206 120 59 chr15 6165881 6166357 -79529397 - MLT1D LTR MaLR 0 505 1 36 23 0 0 chr15 6166403 6166446 -79529308 + AT_rich Low_complexity Low_complexity 1 43 0 1503 114 4 92 chr15 6166721 6166994 -79528760 - AluJb SINE Alu -14 298 50 2097 92 3 46 chr15 6167034 6167339 -79528415 + AluSx SINE Alu 1 292 -20 2541 154 31 1 chr15 6169119 6169762 -79525992 - L1PA13 LINE L1 -626 5539 4874 3772 121 40 8 chr15 6169765 6170370 -79525384 + L1PA13 LINE L1 5540 6163 0 1138 272 175 18 chr15 6172878 6173491 -79522263 - L1ME4a LINE L1 -57 6064 5356 269 289 157 25 chr15 6173733 6173854 -79521900 + MIR SINE MIR 46 182 -80 794 238 121 0 chr15 6173926 6174166 -79521588 + MLT1F1 LTR MaLR 299 567 0 216 100 0 0 chr15 6174168 6174198 -79521556 + MIR SINE MIR 196 225 -37 714 256 102 63 chr15 6174225 6174686 -79521068 + MLT1H LTR MaLR 71 549 0 3782 128 2 6 chr15 6174898 6175427 -79520327 + MER1A DNA MER1_type 1 527 0 2581 171 89 0 chr15 6177229 6177702 -79518052 - MLT2B2 LTR ERVL 0 515 1 1527 171 14 31 chr15 6179218 6179505 -79516249 + AluJo SINE Alu 1 282 -30 2016 103 3 3 chr15 6179604 6179918 -79515836 + AluSx SINE Alu 3 316 0 3483 130 27 30 chr15 6180679 6180729 -79515025 - L1MB3 LINE L1 -3 6180 6131 1848 135 24 0 chr15 6180729 6181026 -79514728 - AluSg SINE Alu -6 304 1 3483 130 27 30 chr15 6181026 6181577 -79514177 - L1MB3 LINE L1 -52 6131 5581 1981 111 0 4 chr15 6181589 6181889 -79513865 + AluSq SINE Alu 10 308 0 322 280 70 14 chr15 6182638 6182781 -79512973 + L1MB8 LINE L1 6027 6177 -1 2942 190 26 3 chr15 6182909 6183489 -79512265 + L1MB3 LINE L1 5591 6183 0 370 306 214 20 chr15 6183713 6183965 -79511789 + L3 LINE CR1 192 492 -1085 253 245 50 86 chr15 6184138 6184277 -79511477 + L3 LINE CR1 743 876 -701 22 35 0 0 chr15 6184990 6185019 -79510735 + AT_rich Low_complexity Low_complexity 1 29 0 355 231 0 0 chr15 6185250 6185315 -79510439 - L2 LINE L2 0 3272 3208 291 288 38 38 chr15 6185512 6185644 -79510110 - L2 LINE L2 -583 2731 2600 2101 114 3 0 chr15 6187582 6187881 -79507873 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr15 6188140 6188172 -79507582 + AT_rich Low_complexity Low_complexity 1 32 0 1784 143 30 50 chr15 6188335 6188436 -79507318 + L1MB3 LINE L1 5824 5925 -258 2201 94 0 7 chr15 6188436 6188753 -79507001 - AluSx SINE Alu 0 312 1 1784 143 30 50 chr15 6188753 6189014 -79506740 + L1MB3 LINE L1 5925 6179 -4 30 0 0 0 chr15 6189015 6189045 -79506709 + AT_rich Low_complexity Low_complexity 1 30 0 239 289 28 42 chr15 6189771 6189913 -79505841 - MER117 DNA MER1_type -38 159 20 27 32 0 32 chr15 6191645 6191664 -79504090 + AT_rich Low_complexity Low_complexity 1 19 -42 487 0 32 0 chr15 6191664 6191727 -79504027 + (CA)n Simple_repeat Simple_repeat 2 66 0 2215 81 0 0 chr15 6191733 6192018 -79503736 - AluSx SINE Alu -27 285 1 27 32 0 32 chr15 6192018 6192054 -79503700 + AT_rich Low_complexity Low_complexity 24 61 0 496 269 85 40 chr15 6192638 6192861 -79502893 - Charlie8 DNA MER1_type -2184 233 1 2031 135 0 6 chr15 6193799 6194110 -79501644 - AluSx SINE Alu -3 309 1 2158 240 64 18 chr15 6196022 6196675 -79499079 + L1ME3A LINE L1 5488 6170 0 910 237 25 29 chr15 6197154 6197247 -79498507 - MER33 DNA MER1_type -2264 321 229 243 0 0 0 chr15 6197247 6197274 -79498480 + (TA)n Simple_repeat Simple_repeat 1 27 0 2450 56 0 10 chr15 6197274 6197580 -79498174 - AluY SINE Alu -8 303 1 910 237 25 29 chr15 6197580 6197703 -79498051 - MER33 DNA MER1_type -2355 230 108 1671 164 40 95 chr15 6197703 6197876 -79497878 + MSTB LTR MaLR 1 182 -244 1818 84 0 0 chr15 6197876 6198113 -79497641 + AluSq SINE Alu 1 237 -76 1671 164 40 95 chr15 6198113 6198166 -79497588 + MSTB LTR MaLR 182 236 -190 2425 44 0 41 chr15 6198166 6198481 -79497273 + AluY SINE Alu 1 302 -9 1671 164 40 95 chr15 6198481 6198704 -79497050 + MSTB LTR MaLR 236 426 0 910 237 25 29 chr15 6198704 6198764 -79496990 - MER33 DNA MER1_type -2477 108 44 306 132 0 0 chr15 6198856 6198909 -79496845 + (TC)n Simple_repeat Simple_repeat 2 54 0 423 56 0 0 chr15 6198909 6198963 -79496791 + (CA)n Simple_repeat Simple_repeat 1 54 0 542 307 77 38 chr15 6199012 6199351 -79496403 + MLT1K LTR MaLR 237 588 0 243 0 0 0 chr15 6199592 6199619 -79496135 + (A)n Simple_repeat Simple_repeat 1 27 0 437 268 150 7 chr15 6200481 6200634 -79495120 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr15 6200871 6200892 -79494862 + AT_rich Low_complexity Low_complexity 1 21 0 6049 168 45 15 chr15 6201108 6201240 -79494514 - L1MC1 LINE L1 -2 6331 6204 2092 121 0 37 chr15 6201240 6201563 -79494191 - AluSq SINE Alu -2 311 1 6049 168 45 15 chr15 6201563 6202884 -79492870 - L1MC1 LINE L1 -129 6204 4829 581 246 82 10 chr15 6202901 6203096 -79492658 - L1MC1 LINE L1 -1353 4793 4585 32 26 0 0 chr15 6203352 6203391 -79492363 + AT_rich Low_complexity Low_complexity 1 39 0 205 261 0 0 chr15 6203798 6203844 -79491910 + (CA)n Simple_repeat Simple_repeat 2 47 0 909 270 92 57 chr15 6204321 6204862 -79490892 + L1MB5 LINE L1 8 567 -5975 3597 130 9 65 chr15 6204888 6205567 -79490187 + L1MA5 LINE L1 5268 5908 -392 2751 134 23 48 chr15 6205613 6205664 -79490090 + L1MA5 LINE L1 5793 5844 -456 2054 118 3 0 chr15 6205664 6205968 -79489786 + AluSx SINE Alu 3 307 -5 2751 134 23 48 chr15 6205968 6206437 -79489317 + L1MA5 LINE L1 5844 6300 0 2793 234 66 66 chr15 6206461 6206948 -79488806 + L1MB5 LINE L1 592 1077 -5595 1908 155 0 0 chr15 6206948 6207245 -79488509 - AluSx SINE Alu -14 298 2 2793 234 66 66 chr15 6207245 6208384 -79487370 + L1MB5 LINE L1 1077 6664 -8 3879 169 113 64 chr15 6209348 6210686 -79485068 - pTR5 LTR ERV1 0 2438 743 197 319 33 22 chr15 6211430 6211521 -79484233 + MIR SINE MIR 95 186 -76 2340 75 0 0 chr15 6211975 6212269 -79483485 + AluSx SINE Alu 1 294 -18 341 182 15 0 chr15 6212387 6212453 -79483301 + AluJ/FRAM SINE Alu 230 296 -6 1969 114 3 7 chr15 6212517 6212806 -79482948 + AluSx SINE Alu 1 288 -24 254 282 157 14 chr15 6212812 6213028 -79482726 + L1P LINE L1 4053 4299 -1847 5201 179 38 41 chr15 6213190 6215198 -79480556 - L1MA9 LINE L1 -1 7730 5719 217 0 61 0 chr15 6215198 6215231 -79480523 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 5201 179 38 41 chr15 6215231 6215763 -79479991 - L1MA9 LINE L1 -2012 5719 5187 1769 184 111 8 chr15 6215763 6216122 -79479632 + MSTD LTR MaLR 1 396 0 5201 179 38 41 chr15 6216122 6216777 -79478977 - L1MA9 LINE L1 -2544 5187 4532 1688 158 79 22 chr15 6216777 6217132 -79478622 + THE1C LTR MaLR 1 375 0 5201 179 38 41 chr15 6217132 6218210 -79477544 - L1MA9 LINE L1 -3199 4532 3323 1512 190 31 3 chr15 6218210 6218499 -79477255 - AluJo SINE Alu -15 297 1 5201 179 38 41 chr15 6218499 6218529 -79477225 - L1MA9 LINE L1 -4408 3323 3294 11199 208 61 18 chr15 6218560 6222432 -79473322 + L1MB7 LINE L1 2120 6167 -17 852 209 95 41 chr15 6222447 6222763 -79472991 + MER69 DNA AcHobo 2138 2470 -56 431 298 121 15 chr15 6222795 6223081 -79472673 + L1ME LINE L1 5429 5638 -528 31566 103 7 12 chr15 6223972 6229366 -79466388 + L1PA7 LINE L1 700 6091 -378 2247 60 3 18 chr15 6229366 6229648 -79466106 + AluY SINE Alu 19 296 -15 31566 103 7 12 chr15 6229648 6230025 -79465729 + L1PA7 LINE L1 6091 6468 -1 2019 122 42 0 chr15 6230153 6230440 -79465314 - AluSx SINE Alu -1 311 13 1077 66 7 0 chr15 6230540 6230676 -79465078 + L1PA7 LINE L1 6017 6153 -1 1698 141 67 20 chr15 6230804 6231101 -79464653 - AluSx SINE Alu -1 311 1 372 246 131 8 chr15 6231286 6231416 -79464338 - MER104 DNA Tc2 -14 166 21 402 258 80 13 chr15 6231607 6231758 -79463996 + MER69A DNA AcHobo 13 173 -4 2006 164 49 27 chr15 6231925 6232291 -79463463 + MLT1A2 LTR MaLR 1 374 0 316 262 115 25 chr15 6233312 6233434 -79462320 - L2 LINE L2 0 3313 3181 3023 141 58 0 chr15 6233546 6234028 -79461726 - L1MB2 LINE L1 -2 6169 5660 988 210 223 3 chr15 6234773 6235020 -79460734 - MLT2B2 LTR ERVL -181 233 1 786 201 187 10 chr15 6235020 6235229 -79460525 + MLT1D LTR MaLR 322 505 0 898 242 41 0 chr15 6235317 6235511 -79460243 + MER3 DNA MER1_type 4 205 -4 818 216 11 28 chr15 6235522 6235703 -79460051 + MER5B DNA MER1_type 1 178 0 245 179 128 51 chr15 6236456 6236534 -79459220 + HAL1b LINE L1 604 687 -661 574 258 109 45 chr15 6236713 6236934 -79458820 - MIR SINE MIR -27 235 1 865 173 24 18 chr15 6237256 6237424 -79458330 - L1MA9 LINE L1 0 6312 6144 1154 184 148 0 chr15 6237430 6237704 -79458050 + AluJo SINE Alu 2 311 0 683 157 0 0 chr15 6237707 6237822 -79457932 - L1MA9 LINE L1 -178 6134 6020 204 40 0 0 chr15 6238610 6238635 -79457119 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 231 36 0 0 chr15 6238634 6238662 -79457092 + (CA)n Simple_repeat Simple_repeat 1 28 0 471 157 0 0 chr15 6238734 6238804 -79456950 - MER8 DNA MER2_type 0 239 170 * 2736 131 18 31 chr15 6238787 6239206 -79456548 + Tigger2 DNA MER2_type 2267 2681 -37 1588 175 133 30 chr15 6239206 6239611 -79456143 + LTR7 LTR ERV1 3 449 -1 2736 131 18 31 chr15 6239611 6239649 -79456105 + Tigger2 DNA MER2_type 2681 2718 0 1683 241 27 31 chr15 6240153 6240479 -79455275 + L1M4 LINE L1 4256 4581 -1565 1143 188 14 36 chr15 6240479 6240702 -79455052 + MER20B DNA MER1_type 2 219 0 1683 241 27 31 chr15 6240702 6240860 -79454894 + L1M4 LINE L1 4581 4738 -1408 1750 222 102 14 chr15 6241358 6241867 -79453887 + L1M4 LINE L1 4747 5300 -846 3136 224 21 34 chr15 6241867 6242644 -79453110 + L1MB7 LINE L1 3 769 -5773 4538 182 70 52 chr15 6242648 6243894 -79451860 + L1MB7 LINE L1 4704 5928 -736 5365 105 68 7 chr15 6243894 6244629 -79451125 - LTR17 LTR ERV1 0 780 1 4538 182 70 52 chr15 6244629 6245328 -79450426 + L1MB7 LINE L1 5928 6614 -50 1743 149 20 40 chr15 6245943 6246245 -79449509 - AluJo SINE Alu -16 296 1 379 316 106 28 chr15 6246331 6246755 -79448999 + L2 LINE L2 1820 2276 -1038 288 292 188 0 chr15 6247488 6247632 -79448122 - L2 LINE L2 0 3272 3102 491 294 0 0 chr15 6248716 6248893 -79446861 + G-rich Low_complexity Low_complexity 1 177 0 1448 198 29 3 chr15 6249036 6249349 -79446405 - MER74A LTR ERVL -222 336 16 764 288 171 16 chr15 6250052 6250503 -79445251 + MER20B DNA MER1_type 213 733 -50 1239 110 48 118 chr15 6251236 6251344 -79444410 - L1MA8 LINE L1 -5 6286 6172 2036 129 0 0 chr15 6251344 6251631 -79444123 - AluSx SINE Alu -25 287 1 1239 110 48 118 chr15 6251631 6251834 -79443920 - L1MA8 LINE L1 -119 6172 6013 285 29 0 0 chr15 6253772 6253806 -79441948 + (A)n Simple_repeat Simple_repeat 1 34 0 794 165 0 0 chr15 6305056 6305177 -79390577 + FLAM_A SINE Alu 1 121 -12 499 314 116 59 chr15 6305269 6305617 -79390137 + L1MC4a LINE L1 4161 4547 -1599 2122 121 7 0 chr15 6305617 6305922 -79389832 + AluSx SINE Alu 1 307 -5 499 314 116 59 chr15 6305922 6306066 -79389688 + L1MC4a LINE L1 4547 4681 -1465 1377 246 81 38 chr15 6306118 6306613 -79389141 + MLT1H1 LTR MaLR 38 553 -2 521 155 16 16 chr15 6306623 6306636 -79389118 + GA-rich Low_complexity Low_complexity 3 15 -116 2230 81 0 7 chr15 6306636 6306932 -79388822 + AluSg SINE Alu 1 294 -16 521 155 16 16 chr15 6306932 6307047 -79388707 + GA-rich Low_complexity Low_complexity 14 131 0 386 281 294 0 chr15 6307108 6307336 -79388418 - L2 LINE L2 -4 3309 3015 347 295 127 27 chr15 6307351 6307720 -79388034 + L1MC4a LINE L1 5518 5923 -1885 23 0 0 0 chr15 6308039 6308062 -79387692 + AT_rich Low_complexity Low_complexity 1 23 0 1684 135 11 18 chr15 6308577 6308858 -79386896 + AluJo SINE Alu 1 279 -33 220 180 24 18 chr15 6308968 6309023 -79386731 - MIR SINE MIR -52 156 98 250 140 20 20 chr15 6310607 6310657 -79385097 - MIR SINE MIR -115 147 98 207 256 0 37 chr15 6311299 6311381 -79384373 + (CAAAC)n Simple_repeat Simple_repeat 5 83 0 545 161 5 38 chr15 6311449 6311635 -79384119 + CT-rich Low_complexity Low_complexity 1 180 0 2085 146 108 28 chr15 6311654 6311736 -79384018 + Tigger2 DNA MER2_type 2298 2372 -346 186 43 0 0 chr15 6311736 6311759 -79383995 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2085 146 108 28 chr15 6311759 6312066 -79383688 + Tigger2 DNA MER2_type 2372 2718 0 347 271 33 49 chr15 6312066 6312188 -79383566 + MIR SINE MIR 134 253 -9 2314 193 52 4 chr15 6312414 6312895 -79382859 - MLT1D LTR MaLR -1 504 1 388 331 238 5 chr15 6312984 6313362 -79382392 - L2 LINE L2 -592 2722 2257 772 243 27 0 chr15 6313850 6313998 -79381756 + MER58A DNA MER1_type 1 152 0 1792 149 17 3 chr15 6313998 6314294 -79381460 + L1M2 LINE L1 5401 5700 -612 201 94 0 0 chr15 6314305 6314337 -79381417 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1981 260 58 73 chr15 6314337 6314397 -79381357 + L1MC4 LINE L1 7090 7149 -893 2221 73 0 3 chr15 6314397 6314683 -79381071 + AluY SINE Alu 1 285 -26 1981 260 58 73 chr15 6314683 6314703 -79381051 + L1MC4 LINE L1 7149 7168 -874 180 0 0 0 chr15 6314703 6314723 -79381031 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1981 260 58 73 chr15 6314723 6315601 -79380153 + L1MC4 LINE L1 7168 8036 -6 456 285 72 101 chr15 6315731 6315772 -79379982 - L1MDb LINE L1 -1029 1738 1697 1733 173 3 3 chr15 6315772 6316078 -79379676 - AluJb SINE Alu -2 310 5 456 285 72 101 chr15 6316078 6316534 -79379220 - L1MDb LINE L1 -1070 1697 1148 1786 132 3 21 chr15 6316544 6316832 -79378922 + AluSx SINE Alu 5 287 -25 222 37 0 0 chr15 6316835 6316862 -79378892 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr15 6316912 6316941 -79378813 + AT_rich Low_complexity Low_complexity 1 29 0 370 260 0 32 chr15 6317945 6318068 -79377686 + L1ME LINE L1 4461 4579 -1567 415 313 74 44 chr15 6318096 6318393 -79377361 + L1ME LINE L1 5357 5662 -459 269 298 67 0 chr15 6318420 6318524 -79377230 + L1ME LINE L1 5703 5813 -357 2392 63 7 0 chr15 6318672 6318975 -79376779 + AluY SINE Alu 1 305 -6 207 0 0 0 chr15 6319142 6319165 -79376589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2030 91 3 21 chr15 6319167 6319454 -79376300 - AluY SINE Alu -29 282 1 2017 120 0 3 chr15 6319456 6319748 -79376006 - AluSq SINE Alu -22 291 1 279 0 0 0 chr15 6319837 6319868 -79375886 + (CA)n Simple_repeat Simple_repeat 2 32 0 269 267 95 43 chr15 6320424 6320540 -79375214 + MIR SINE MIR 9 130 -132 388 310 9 0 chr15 6320540 6320656 -79375098 - MLT1H LTR MaLR -325 224 108 183 286 36 0 chr15 6321293 6321349 -79374405 + L2 LINE L2 3224 3281 -32 1808 135 12 55 chr15 6321400 6321726 -79374028 + AluJo SINE Alu 1 312 0 291 54 0 0 chr15 6324320 6324357 -79371397 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 263 308 48 10 chr15 6324406 6324510 -79371244 - L2 LINE L2 -52 3261 3154 187 274 226 0 chr15 6324530 6324632 -79371122 - L2 LINE L2 -8 3305 3181 307 351 58 0 chr15 6324723 6324894 -79370860 - L2 LINE L2 -610 2704 2524 731 189 44 9 chr15 6325180 6325406 -79370348 - MER57A LTR ERV1 0 403 201 359 183 49 12 chr15 6325391 6325473 -79370281 - LTR54 LTR ERV1 -271 239 155 * 424 81 16 0 chr15 6325473 6325535 -79370219 + (TC)n Simple_repeat Simple_repeat 2 64 0 761 163 95 0 chr15 6325562 6325709 -79370045 - LTR54 LTR ERV1 -345 165 5 313 241 25 13 chr15 6325852 6325931 -79369823 + GA-rich Low_complexity Low_complexity 3 82 0 2205 127 0 3 chr15 6326138 6326445 -79369309 - AluSc SINE Alu -3 306 1 5624 191 45 28 chr15 6327201 6328661 -79367093 + L1MB3 LINE L1 3982 5415 -768 2450 67 3 3 chr15 6328661 6328959 -79366795 - AluY SINE Alu -13 298 1 5624 191 45 28 chr15 6328959 6329166 -79366588 + L1MB3 LINE L1 5415 5617 -566 333 0 0 0 chr15 6329166 6329203 -79366551 + (TG)n Simple_repeat Simple_repeat 1 37 0 5624 191 45 28 chr15 6329203 6329226 -79366528 + L1MB3 LINE L1 5617 5638 -545 1720 178 0 0 chr15 6329226 6329490 -79366264 - AluJb SINE Alu -32 280 17 5624 191 45 28 chr15 6329490 6329969 -79365785 + L1MB3 LINE L1 5638 6183 0 1456 165 26 0 chr15 6329964 6330230 -79365524 + L1M3 LINE L1 5428 5700 -480 * 265 241 130 37 chr15 6330534 6330642 -79365112 + L2 LINE L2 3187 3304 -9 1934 136 0 52 chr15 6331365 6331551 -79364203 - AluSx SINE Alu -5 307 144 2585 71 0 0 chr15 6331551 6331862 -79363892 - AluY SINE Alu 0 311 1 1934 136 0 52 chr15 6331862 6331999 -79363755 - AluSx SINE Alu -168 144 1 495 242 33 0 chr15 6332188 6332308 -79363446 + MIR SINE MIR 139 262 0 916 182 17 22 chr15 6333236 6333417 -79362337 - MLT2D LTR ERVL -234 180 1 1890 215 20 51 chr15 6333429 6333795 -79361959 + L1M4 LINE L1 4484 4829 -1317 1573 107 5 9 chr15 6333795 6334011 -79361743 - AluSg/x SINE Alu -13 297 83 1890 215 20 51 chr15 6334011 6334197 -79361557 + L1M4 LINE L1 4829 5019 -1127 606 309 55 60 chr15 6334320 6334486 -79361268 + HAL1b LINE L1 73 238 -1110 2274 94 3 0 chr15 6334486 6334801 -79360953 - AluSg SINE Alu 0 316 1 606 309 55 60 chr15 6334801 6335101 -79360653 + HAL1b LINE L1 238 539 -809 2947 82 13 0 chr15 6335106 6335497 -79360257 + L1PA10 LINE L1 5757 6152 -16 24 0 0 0 chr15 6335499 6335523 -79360231 + AT_rich Low_complexity Low_complexity 1 24 0 1594 169 29 88 chr15 6335698 6336153 -79359601 + L1MB7 LINE L1 4946 5373 -773 3557 146 51 2 chr15 6336157 6336280 -79359474 + L1MA9 LINE L1 5653 5768 -544 258 105 0 0 chr15 6336280 6336318 -79359436 + (TG)n Simple_repeat Simple_repeat 1 38 0 3557 146 51 2 chr15 6336318 6336823 -79358931 + L1MA9 LINE L1 5768 6312 0 371 56 19 0 chr15 6336841 6336895 -79358859 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4266 160 23 27 chr15 6337224 6337427 -79358327 + L1MB7 LINE L1 5366 5568 -616 2613 56 0 0 chr15 6337427 6337732 -79358022 + AluY SINE Alu 1 305 -6 4266 160 23 27 chr15 6337732 6338345 -79357409 + L1MB7 LINE L1 5568 6179 -5 1113 141 32 2 chr15 6338382 6338630 -79357124 + AluSx SINE Alu 2 309 -1 1650 232 99 92 chr15 6338917 6338991 -79356763 + L1MC5 LINE L1 6541 6613 -1348 468 0 0 0 chr15 6338991 6339043 -79356711 + (TG)n Simple_repeat Simple_repeat 2 53 0 1650 232 99 92 chr15 6339043 6339516 -79356238 + L1MC5 LINE L1 6613 7108 -853 2090 129 7 3 chr15 6339516 6339811 -79355943 - AluSx SINE Alu -16 296 1 1650 232 99 92 chr15 6339811 6340128 -79355626 + L1MC5 LINE L1 7108 7421 -540 1057 133 0 0 chr15 6340183 6340334 -79355420 + AluSg/x SINE Alu 144 294 -16 515 248 7 0 chr15 6340343 6340496 -79355258 + GA-rich Low_complexity Low_complexity 4 157 0 1930 135 40 10 chr15 6340569 6340872 -79354882 + AluJb SINE Alu 1 312 0 308 314 25 38 chr15 6341002 6341161 -79354593 + L1ME3A LINE L1 6013 6169 -1 273 301 152 2 chr15 6341608 6341756 -79353998 + MIR SINE MIR 16 182 -62 2522 73 0 3 chr15 6342253 6342566 -79353188 + AluSx SINE Alu 1 312 0 883 220 17 0 chr15 6343294 6343464 -79352290 + MLT1C LTR MaLR 1 173 -217 1020 151 58 16 chr15 6343464 6343751 -79352003 + AluJo SINE Alu 1 353 0 998 222 32 5 chr15 6343783 6343999 -79351755 + MLT1C LTR MaLR 246 467 0 930 238 110 12 chr15 6344167 6344486 -79351268 - MSTD LTR MaLR 0 396 21 2605 116 16 49 chr15 6344486 6344933 -79350821 + MSTB1 LTR MaLR 1 432 0 930 238 110 12 chr15 6344933 6344957 -79350797 - MSTD LTR MaLR -375 21 1 300 182 61 0 chr15 6345126 6345192 -79350562 + LTR50 LTR ERVL 1 70 -725 251 299 106 23 chr15 6345230 6345447 -79350307 + L2 LINE L2 666 900 -2414 1289 224 131 8 chr15 6345599 6345965 -79349789 + L1MD2 LINE L1 5949 6359 0 231 333 138 8 chr15 6346342 6346465 -79349289 + L2 LINE L2 3134 3272 0 1356 157 39 74 chr15 6346509 6346533 -79349221 - L1MC3 LINE L1 0 7785 7762 1800 125 14 54 chr15 6346533 6346671 -79349083 + AluSx SINE Alu 1 143 -167 2339 43 0 7 chr15 6346671 6346950 -79348804 + AluY SINE Alu 35 311 0 1800 125 14 54 chr15 6346950 6347133 -79348621 + AluSx SINE Alu 143 310 0 1356 157 39 74 chr15 6347133 6347444 -79348310 - L1MC3 LINE L1 -23 7762 7461 4053 163 59 131 chr15 6347455 6347988 -79347766 - L1MC3 LINE L1 -658 7127 6557 299 65 22 0 chr15 6347988 6348034 -79347720 + MADE1 DNA Mariner 1 47 -33 4053 163 59 131 chr15 6348034 6348516 -79347238 - L1MC3 LINE L1 -1228 6557 6172 2039 147 0 7 chr15 6348516 6348822 -79346932 - AluSx SINE Alu -8 304 1 4053 163 59 131 chr15 6348822 6349046 -79346708 - L1MC3 LINE L1 -1613 6172 5934 1411 116 5 0 chr15 6349146 6349353 -79346401 + AluSp SINE Alu 90 297 -16 2361 160 21 36 chr15 6349353 6349610 -79346144 - L1MC3 LINE L1 -1928 5857 5609 1798 161 3 7 chr15 6349610 6349909 -79345845 + AluJb SINE Alu 1 298 -14 2361 160 21 36 chr15 6349909 6350119 -79345635 - L1MC3 LINE L1 -2176 5609 5397 2598 64 0 0 chr15 6350455 6350766 -79344988 - AluY SINE Alu 0 311 1 285 280 21 0 chr15 6351291 6351384 -79344370 + MIR SINE MIR 59 153 -109 383 289 128 50 chr15 6351457 6351699 -79344055 + Charlie8 DNA MER1_type 6 266 -2151 436 32 16 16 chr15 6352207 6352270 -79343484 + (CAT)n Simple_repeat Simple_repeat 1 63 0 760 192 0 0 chr15 6352416 6352541 -79343213 - FLAM_A SINE Alu -8 125 1 3841 150 147 107 chr15 6352563 6352663 -79343091 - Tigger6a DNA MER2_type -514 1083 988 2705 36 0 0 chr15 6352663 6352967 -79342787 - AluY SINE Alu -7 304 1 3841 150 147 107 chr15 6352967 6353907 -79341847 - Tigger6a DNA MER2_type -609 988 1 286 255 7 111 chr15 6353907 6354060 -79341694 + L2 LINE L2 3169 3305 -8 24 0 0 0 chr15 6354288 6354312 -79341442 + AT_rich Low_complexity Low_complexity 1 24 0 1356 120 0 0 chr15 6354312 6354496 -79341258 - AluSg/x SINE Alu -16 294 111 297 212 0 15 chr15 6354667 6354733 -79341021 - L2 LINE L2 -301 2971 2907 578 246 50 17 chr15 6355040 6355219 -79340535 + MER5A DNA MER1_type 3 187 -2 2178 125 0 0 chr15 6355412 6355709 -79340045 - AluSx SINE Alu -15 297 1 358 277 190 39 chr15 6355853 6356163 -79339591 + L1ME LINE L1 5258 5617 -504 320 267 10 10 chr15 6357188 6357289 -79338465 - L1MC4a LINE L1 -1893 5915 5815 2125 114 10 3 chr15 6357325 6357622 -79338132 + AluSx SINE Alu 1 299 -13 272 287 140 15 chr15 6357627 6357763 -79337991 - L1ME3A LINE L1 -30 6140 5988 303 174 96 43 chr15 6357878 6357993 -79337761 - L1MC5 LINE L1 -431 7530 7410 2039 101 0 7 chr15 6357995 6358271 -79337483 - AluSc SINE Alu -2 307 34 260 294 50 102 chr15 6358294 6358592 -79337162 - HAL1b LINE L1 -809 539 277 1897 137 4 14 chr15 6358592 6358895 -79336859 - AluSx SINE Alu 0 308 9 260 294 50 102 chr15 6358895 6359115 -79336639 - HAL1b LINE L1 -1071 277 47 3160 64 52 9 chr15 6359528 6359562 -79336192 - MLT2A1 LTR ERVL -6 438 407 497 89 25 0 chr15 6359562 6359641 -79336113 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3160 64 52 9 chr15 6359641 6360026 -79335728 - MLT2A1 LTR ERVL -37 407 1 2245 64 0 44 chr15 6360293 6360637 -79335117 - AluY SINE Alu 0 331 1 368 164 15 0 chr15 6361037 6361104 -79334650 - L1MC4a LINE L1 -2035 5773 5706 956 205 252 20 chr15 6361109 6361411 -79334343 + MSTD LTR MaLR 1 372 -24 375 164 44 3 chr15 6361443 6361523 -79334231 + MSTD LTR MaLR 324 396 0 184 256 205 0 chr15 6361824 6361902 -79333852 - L2 LINE L2 -38 3234 3141 471 187 79 50 chr15 6364921 6365060 -79330694 + LTR45B LTR ERV1 342 484 -5 338 183 0 0 chr15 6366224 6366284 -79329470 + L2 LINE L2 3251 3310 -3 813 153 0 0 chr15 6366545 6366663 -79329091 + FLAM_C SINE Alu 1 118 -25 2249 112 7 0 chr15 6366920 6367224 -79328530 - AluSx SINE Alu -6 306 1 2667 180 13 42 chr15 6368492 6368563 -79327191 - MLT2B2 LTR ERVL 0 515 443 1985 119 51 14 chr15 6368563 6368857 -79326897 + AluSx SINE Alu 1 305 -7 2667 180 13 42 chr15 6368857 6369308 -79326446 - MLT2B2 LTR ERVL -72 443 8 2351 97 0 3 chr15 6369912 6370211 -79325543 + AluSg SINE Alu 1 298 -12 521 279 113 22 chr15 6370822 6370881 -79324873 - MIR SINE MIR -6 256 204 2272 104 0 3 chr15 6370881 6371180 -79324574 + AluY SINE Alu 1 298 -13 521 279 113 22 chr15 6371180 6371342 -79324412 - MIR SINE MIR -58 204 15 797 246 123 29 chr15 6371781 6372255 -79323499 - MLT2F LTR ERVL -23 640 98 1077 169 0 0 chr15 6372262 6372434 -79323320 + FRAM SINE Alu 1 172 -4 1171 53 0 0 chr15 6372878 6373011 -79322743 + AluY SINE Alu 1 133 -178 2595 55 3 3 chr15 6373012 6373321 -79322433 + AluY SINE Alu 1 309 -2 2470 187 118 42 chr15 6373330 6373955 -79321799 + L1MB1 LINE L1 5446 6118 -50 1228 102 0 18 chr15 6374056 6374222 -79321532 - AluSq SINE Alu -150 163 1 437 294 37 27 chr15 6375080 6375267 -79320487 - MIR SINE MIR -65 197 9 1705 73 9 18 chr15 6375534 6375752 -79320002 - AluSq SINE Alu -97 216 1 233 233 0 0 chr15 6376027 6376070 -79319684 + (CA)n Simple_repeat Simple_repeat 2 44 0 2604 214 92 42 chr15 6376369 6376586 -79319168 - L1MD2 LINE L1 -3 6750 6545 333 0 0 0 chr15 6376586 6376623 -79319131 + (TG)n Simple_repeat Simple_repeat 2 38 0 2604 214 92 42 chr15 6376623 6377111 -79318643 - L1MD2 LINE L1 -208 6545 5993 2129 128 3 0 chr15 6377111 6377407 -79318347 - AluSx SINE Alu -13 299 3 2604 214 92 42 chr15 6377407 6377552 -79318202 - L1MD2 LINE L1 -760 5993 5857 1682 122 50 4 chr15 6377562 6377824 -79317930 - AluSx SINE Alu -1 311 38 1296 217 97 26 chr15 6377842 6377944 -79317810 - L1MD2 LINE L1 -1794 4746 4653 2344 128 34 0 chr15 6377944 6378296 -79317458 + THE1B LTR MaLR 1 364 0 1296 217 97 26 chr15 6378296 6378576 -79317178 - L1MD2 LINE L1 -1887 4653 4337 558 250 61 0 chr15 6378690 6378886 -79316868 - L1MD2 LINE L1 -3003 3537 3330 4116 167 39 34 chr15 6378917 6378977 -79316777 - L1MB4 LINE L1 -41 6139 6081 2453 84 0 0 chr15 6378977 6379275 -79316479 + AluSc SINE Alu 1 298 -11 4116 167 39 34 chr15 6379275 6380090 -79315664 - L1MB4 LINE L1 -99 6081 5260 * 5356 231 91 76 chr15 6380084 6380467 -79315287 - L1MD2 LINE L1 -3351 3189 2813 2015 152 0 0 chr15 6380467 6380764 -79314990 - AluSx SINE Alu -15 297 1 5356 231 91 76 chr15 6380764 6381549 -79314205 - L1MD2 LINE L1 -3727 2813 2041 2088 133 3 7 chr15 6381549 6381858 -79313896 + AluSx SINE Alu 1 308 -4 5356 231 91 76 chr15 6381858 6382415 -79313339 - L1MD2 LINE L1 -4499 2041 1494 2048 93 22 0 chr15 6382415 6382683 -79313071 - AluSx SINE Alu -25 287 14 5356 231 91 76 chr15 6382683 6384046 -79311708 - L1MD2 LINE L1 -5046 1494 41 1860 132 0 29 chr15 6384214 6384494 -79311260 + AluSq SINE Alu 1 272 -41 2193 95 31 0 chr15 6385393 6385687 -79310067 + AluSx SINE Alu 1 303 -9 2182 152 40 71 chr15 6386157 6386636 -79309118 - MER21A LTR ERV1 -9 922 459 1590 54 32 36 chr15 6386636 6386857 -79308897 - AluY SINE Alu -91 220 1 1185 173 240 0 chr15 6386858 6387112 -79308642 - MER21B LTR ERV1 -548 315 1 259 280 51 42 chr15 6388157 6388275 -79307479 + MLT1H LTR MaLR 433 536 -13 402 264 42 0 chr15 6389402 6389546 -79306208 - MLT2E LTR ERVL -9 619 470 600 227 87 35 chr15 6389626 6389798 -79305956 - MLT2E LTR ERVL -318 310 130 563 245 125 35 chr15 6389963 6390163 -79305591 - MER20 DNA MER1_type -1 218 1 436 213 37 37 chr15 6390172 6390308 -79305446 + Charlie7 DNA MER1_type 2277 2412 -200 980 151 7 0 chr15 6390309 6390455 -79305299 + AluJo SINE Alu 1 147 -165 301 64 0 0 chr15 6391139 6391186 -79304568 + L1MB4 LINE L1 6134 6180 0 7126 225 29 32 chr15 6391232 6391472 -79304282 + L1M4 LINE L1 2964 3203 -2943 2414 100 0 3 chr15 6391472 6391783 -79303971 - AluSx SINE Alu -2 310 1 7126 225 29 32 chr15 6391783 6392090 -79303664 + L1M4 LINE L1 3203 3509 -2637 1604 178 44 17 chr15 6392090 6392419 -79303335 + AluJb SINE Alu 1 312 0 7126 225 29 32 chr15 6392419 6393264 -79302490 + L1M4 LINE L1 3509 4352 -1794 2229 124 0 0 chr15 6393264 6393571 -79302183 + AluSx SINE Alu 1 307 -5 7126 225 29 32 chr15 6393571 6394161 -79301593 + L1M4 LINE L1 4352 4942 -1204 318 244 11 22 chr15 6394176 6394266 -79301488 - L1MC4 LINE L1 -1339 6703 6615 280 71 0 71 chr15 6394269 6394339 -79301415 + (TA)n Simple_repeat Simple_repeat 2 66 0 2196 104 0 3 chr15 6394339 6394626 -79301128 - AluSc SINE Alu -23 286 1 3619 194 74 25 chr15 6394626 6395215 -79300539 + L1MB8 LINE L1 4891 5450 -728 2400 93 3 0 chr15 6395215 6395525 -79300229 + AluY SINE Alu 1 311 0 3619 194 74 25 chr15 6395525 6396150 -79299604 + L1MB8 LINE L1 5450 6168 -10 2230 103 3 28 chr15 6396235 6396598 -79299156 + AluSx SINE Alu 1 355 0 658 197 0 58 chr15 6396642 6396779 -79298975 + FLAM_C SINE Alu 2 130 -3 2230 81 3 11 chr15 6397263 6397573 -79298181 - AluY SINE Alu 0 308 1 1987 214 49 62 chr15 6397870 6398504 -79297250 - MLT1E2 LTR MaLR 0 626 1 279 289 68 55 chr15 6399886 6400121 -79295633 + MER110-int LTR ERV1 3160 3397 -3404 2263 104 16 3 chr15 6400370 6400677 -79295077 + AluSq SINE Alu 1 311 -2 324 70 0 0 chr15 6400764 6400807 -79294947 + (CA)n Simple_repeat Simple_repeat 2 44 0 2238 123 7 0 chr15 6401153 6401499 -79294255 + AluSx SINE Alu 1 348 0 2320 119 0 0 chr15 6402025 6402335 -79293419 + AluSx SINE Alu 1 310 -2 264 135 0 0 chr15 6402405 6402442 -79293312 + AluSg/x SINE Alu 142 178 -122 1392 166 11 42 chr15 6402487 6402752 -79293002 + AluJo SINE Alu 47 303 -9 390 339 49 36 chr15 6402758 6403065 -79292689 + MER110-int LTR ERV1 2426 2736 -1911 6981 195 66 37 chr15 6403133 6404705 -79291049 + MER52A LTR ERV1 136 1753 -2 189 0 0 0 chr15 6404859 6404880 -79290874 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2110 128 32 35 chr15 6405111 6405487 -79290267 + THE1C LTR MaLR 1 375 0 265 333 9 9 chr15 6406450 6406564 -79289190 + MER70-int LTR ERVL 4552 4665 -358 1614 242 69 10 chr15 6406917 6407440 -79288314 + L1MCc LINE L1 1002 1571 -4851 1985 148 7 0 chr15 6407460 6407758 -79287996 + AluSx SINE Alu 3 302 -10 688 244 21 50 chr15 6407775 6407944 -79287810 + L1MCc LINE L1 2279 2441 -4681 1862 175 0 3 chr15 6407944 6408241 -79287513 - AluSx SINE Alu -16 296 1 688 244 21 50 chr15 6408241 6408309 -79287445 + L1MCc LINE L1 2441 2509 -4613 * 1529 188 39 36 chr15 6408287 6408671 -79287083 + L1ME1 LINE L1 6165 6549 -2288 441 141 81 101 chr15 6408671 6408770 -79286984 - LTR12 LTR ERV1 -132 582 313 1320 155 0 48 chr15 6408770 6409041 -79286713 - AluY SINE Alu -20 291 34 1492 142 60 173 chr15 6409070 6409522 -79286232 - LTR12 LTR ERV1 -313 401 1 941 204 97 94 chr15 6409585 6409772 -79285982 + L1ME1 LINE L1 6574 6759 -202 2417 115 13 31 chr15 6409772 6410154 -79285600 + THE1C LTR MaLR 1 375 0 941 204 97 94 chr15 6410154 6410348 -79285406 + L1ME1 LINE L1 6759 6956 -5 2194 112 0 3 chr15 6410903 6411199 -79284555 + AluY SINE Alu 1 295 -16 574 249 104 37 chr15 6411235 6411476 -79284278 - L1ME3A LINE L1 -99 6071 5815 1135 79 13 26 chr15 6412108 6412260 -79283494 + AluSq/x SINE Alu 1 150 -163 526 95 0 0 chr15 6412261 6412335 -79283419 + Alu SINE Alu 222 295 -17 342 221 75 80 chr15 6414426 6414639 -79281115 + L1ME1 LINE L1 4943 5154 -992 1852 196 101 13 chr15 6414646 6415120 -79280634 + L1ME1 LINE L1 5648 6163 -3 270 81 0 0 chr15 6416239 6416276 -79279478 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 266 248 99 30 chr15 6417559 6417660 -79278094 - MER94 DNA DNA -23 111 4 634 190 224 6 chr15 6418007 6418181 -79277573 + MER20 DNA MER1_type 2 213 -6 2161 93 43 7 chr15 6418685 6418986 -79276768 + AluSx SINE Alu 1 312 0 2104 116 0 17 chr15 6419247 6419541 -79276213 - AluSx SINE Alu -23 289 1 891 194 164 64 chr15 6419649 6419979 -79275775 + MLT1A1 LTR MaLR 3 365 0 1446 180 0 4 chr15 6420196 6420435 -79275319 - MER8 DNA MER2_type 0 239 2 1236 126 0 0 chr15 6420628 6420802 -79274952 - AluSg/x SINE Alu 0 310 137 3640 44 0 0 chr15 6420902 6421337 -79274417 + L1PA5 LINE L1 5716 6150 -4 1369 94 0 0 chr15 6421340 6421510 -79274244 + AluSp SINE Alu 130 299 -14 2285 99 3 10 chr15 6423318 6423621 -79272133 - AluSx SINE Alu -11 301 1 748 279 276 17 chr15 6423656 6424186 -79271568 + L2 LINE L2 2309 2975 -339 1687 225 57 14 chr15 6424224 6424642 -79271112 - MLT1C LTR MaLR -5 462 27 2486 84 0 3 chr15 6424643 6424953 -79270801 - AluY SINE Alu -2 309 1 2427 88 0 13 chr15 6424953 6425261 -79270493 - AluSq SINE Alu -9 304 1 1415 174 33 10 chr15 6425798 6426097 -79269657 + L1MB7 LINE L1 5562 5867 -317 821 238 117 57 chr15 6426097 6426483 -79269271 + LTR48B LTR ERV1 1 409 -213 1304 133 0 10 chr15 6426507 6426702 -79269052 + AluSg/x SINE Alu 119 311 -1 2094 115 21 24 chr15 6426703 6427043 -79268711 + MSTC LTR MaLR 88 426 -2 228 250 32 97 chr15 6428073 6428197 -79267557 - MER69A DNA AcHobo -19 158 43 2585 222 80 43 chr15 6428282 6429049 -79266705 + MER21B LTR ERV1 12 806 -57 2239 122 0 3 chr15 6429448 6429751 -79266003 - AluSx SINE Alu -8 304 3 1238 185 13 21 chr15 6430045 6430283 -79265471 - LTR8 LTR ERV1 0 691 456 3303 128 78 32 chr15 6430291 6430890 -79264864 - MER41B LTR ERV1 -8 627 1 2174 121 61 93 chr15 6430890 6431359 -79264395 - LTR8 LTR ERV1 -232 459 6 2425 84 0 0 chr15 6431724 6432032 -79263722 - AluSg SINE Alu -2 308 1 191 121 15 76 chr15 6432177 6432243 -79263511 + GA-rich Low_complexity Low_complexity 2 63 0 1415 121 4 82 chr15 6432924 6433205 -79262549 + AluJb SINE Alu 34 292 -20 2430 73 3 7 chr15 6433781 6434084 -79261670 + AluSp SINE Alu 1 302 -11 890 126 0 15 chr15 6434084 6434211 -79261543 - FLAM_C SINE Alu -175 127 1 280 243 0 78 chr15 6436150 6436253 -79259501 - MLT1K LTR MaLR -111 477 383 2222 105 0 3 chr15 6436645 6436939 -79258815 + AluSx SINE Alu 1 293 -19 203 237 0 0 chr15 6437068 6437106 -79258648 + G-rich Low_complexity Low_complexity 1 38 0 400 215 56 0 chr15 6437110 6437217 -79258537 - MLT1A2 LTR MaLR -200 174 62 3250 92 18 2 chr15 6437218 6437676 -79258078 - Charlie3 DNA MER1_type -4 2706 2242 2885 102 93 9 chr15 6437670 6438130 -79257624 - Charlie3 DNA MER1_type -2210 500 2 * 336 247 41 10 chr15 6438173 6438270 -79257484 - LTR45B LTR ERV1 -39 450 351 443 191 0 22 chr15 6438393 6438482 -79257272 - MER72 LTR ERV1 -266 456 370 374 149 75 0 chr15 6438673 6438740 -79257014 - MLT1A2 LTR MaLR -302 72 1 350 147 46 67 chr15 6439053 6439162 -79256592 + MER41B LTR ERV1 191 323 -269 * 929 184 150 49 chr15 6439160 6439427 -79256327 + MER66A LTR ERV1 184 477 -1 244 322 51 76 chr15 6439461 6439815 -79255939 - L1ME LINE L1 -410 5711 5367 1948 174 36 0 chr15 6439974 6440308 -79255446 + MER7A DNA MER2_type 2 345 -1 228 159 0 23 chr15 6440362 6440392 -79255362 + (TATG)n Simple_repeat Simple_repeat 2 32 -12 1652 185 14 11 chr15 6440392 6440679 -79255075 - AluJb SINE Alu -24 288 1 228 159 0 23 chr15 6440679 6440692 -79255062 + (TATG)n Simple_repeat Simple_repeat 32 44 0 302 357 24 12 chr15 6440704 6440956 -79254798 - L1ME LINE L1 -1006 5140 4886 286 194 32 54 chr15 6440985 6441078 -79254676 + L1MC4 LINE L1 7864 7954 -88 1077 223 97 19 chr15 6441102 6441421 -79254333 - MER2 DNA MER2_type 0 344 1 2059 96 30 46 chr15 6441483 6441786 -79253968 + AluSx SINE Alu 1 298 -14 248 231 0 0 chr15 6443190 6443242 -79252512 + LTR30 LTR ERV1 1 52 -670 1631 146 16 177 chr15 6443242 6443756 -79251998 + LTR12 LTR ERV1 53 483 -231 227 306 58 50 chr15 6445649 6445770 -79249984 - MIR SINE MIR -43 219 98 236 270 90 0 chr15 6446617 6446702 -79249052 + MIR SINE MIR 32 129 -79 1627 132 14 66 chr15 6446702 6446898 -79248856 - AluJb SINE Alu -3 309 131 2221 112 0 10 chr15 6446898 6447192 -79248562 + AluSq SINE Alu 1 291 -22 1627 132 14 66 chr15 6447192 6447284 -79248470 - AluJb SINE Alu -181 131 36 236 270 90 0 chr15 6447284 6447298 -79248456 + MIR SINE MIR 129 140 -68 311 300 36 0 chr15 6447871 6448011 -79247743 + L1M4 LINE L1 16 160 -6382 389 254 49 60 chr15 6448177 6448362 -79247392 + L1M4 LINE L1 483 665 -5877 225 156 133 0 chr15 6448395 6448440 -79247314 - MER2 DNA MER2_type -28 317 267 1957 161 0 0 chr15 6448440 6448744 -79247010 + AluSx SINE Alu 1 304 -8 1875 126 17 3 chr15 6448750 6449051 -79246703 + L1MA3 LINE L1 6000 6304 -1 1030 187 5 46 chr15 6449057 6449276 -79246478 - MER2 DNA MER2_type -134 211 2 2236 213 79 88 chr15 6449340 6449523 -79246231 + L1M4 LINE L1 724 907 -5739 195 100 0 0 chr15 6449523 6449553 -79246201 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2236 213 79 88 chr15 6449553 6449921 -79245833 + L1M4 LINE L1 907 1277 -5369 1993 128 10 10 chr15 6449921 6450218 -79245536 - AluSx SINE Alu -15 297 1 2236 213 79 88 chr15 6450218 6450965 -79244789 + L1M4 LINE L1 1277 2038 -4608 3208 226 61 13 chr15 6451098 6452204 -79243550 + L1M4 LINE L1 2544 3707 -2937 702 261 125 46 chr15 6452314 6452617 -79243137 + MLT1B LTR MaLR 1 327 -63 260 128 0 0 chr15 6452679 6452718 -79243036 + MLT1B LTR MaLR 335 373 -17 2345 80 7 0 chr15 6452958 6453245 -79242509 - AluSx SINE Alu -23 289 1 900 216 158 18 chr15 6453731 6454004 -79241750 - MER33 DNA MER1_type -2 322 12 2262 119 0 10 chr15 6455224 6455534 -79240220 - AluSg SINE Alu -2 308 2 608 113 66 28 chr15 6455689 6455795 -79239959 + MER46A DNA MER2_type 1 110 -126 361 184 0 0 chr15 6455796 6455872 -79239882 + MER46A DNA MER2_type 158 233 -3 384 211 59 125 chr15 6455892 6455972 -79239782 + MER104 DNA Tc2 35 102 -1796 1944 140 21 0 chr15 6455972 6456257 -79239497 - AluSx SINE Alu -21 291 1 384 211 59 125 chr15 6456257 6456328 -79239426 + MER104 DNA Tc2 102 176 -4 2216 110 13 10 chr15 6457218 6457519 -79238235 + AluSx SINE Alu 1 302 -10 372 303 68 8 chr15 6457519 6457651 -79238103 + MIR SINE MIR 24 163 -99 487 257 33 56 chr15 6458616 6458830 -79236924 + L1ME LINE L1 5366 5574 -590 892 250 111 6 chr15 6458909 6459165 -79236589 + L1M4 LINE L1 4376 4676 -1968 2321 107 7 3 chr15 6459165 6459473 -79236281 + AluSx SINE Alu 1 309 -3 892 250 111 6 chr15 6459473 6459548 -79236206 + L1M4 LINE L1 4676 4742 -1902 2185 122 0 3 chr15 6460673 6460969 -79234785 - AluSx SINE Alu -17 295 1 560 247 80 7 chr15 6461041 6461191 -79234563 - MER58B DNA MER1_type -1 340 180 262 241 115 23 chr15 6463366 6463453 -79232301 - L2 LINE L2 -1 3312 3218 2450 69 3 0 chr15 6463548 6463839 -79231915 - AluY SINE Alu -19 292 1 2466 79 0 3 chr15 6463839 6464142 -79231612 - AluY SINE Alu -9 302 1 466 202 97 24 chr15 6464938 6465062 -79230692 + MLT1E3 LTR MaLR 90 222 -402 282 130 0 0 chr15 6465273 6465319 -79230435 - MLT2F LTR ERVL -2 661 616 282 227 15 15 chr15 6465384 6465450 -79230304 + MIR3 SINE MIR 7 72 -136 23 0 0 0 chr15 6465554 6465577 -79230177 + AT_rich Low_complexity Low_complexity 1 23 0 230 257 121 7 chr15 6466766 6466904 -79228850 + MIR SINE MIR 20 179 -65 180 0 0 0 chr15 6467426 6467446 -79228308 + (A)n Simple_repeat Simple_repeat 1 20 0 2301 109 120 5 chr15 6470490 6470874 -79224880 + MSTA LTR MaLR 1 428 0 7585 128 8 51 chr15 6470874 6472505 -79223249 + MSTA-int LTR MaLR 1 1580 0 2023 137 129 5 chr15 6472505 6472886 -79222868 + MSTA LTR MaLR 1 428 0 1998 113 0 0 chr15 6475448 6475734 -79220020 - AluSx SINE Alu 0 302 17 35 54 0 0 chr15 6476061 6476117 -79219637 + AT_rich Low_complexity Low_complexity 1 56 0 2321 66 7 7 chr15 6476353 6476656 -79219098 - AluY SINE Alu -8 303 1 1901 165 0 13 chr15 6477273 6477589 -79218165 + AluSq SINE Alu 2 313 0 23 0 0 0 chr15 6477767 6477790 -79217964 + AT_rich Low_complexity Low_complexity 1 23 0 2267 80 37 10 chr15 6478060 6478360 -79217394 - AluSp SINE Alu -5 308 1 444 213 213 7 chr15 6478632 6478787 -79216967 - MIR SINE MIR 0 262 76 687 188 43 120 chr15 6478844 6479078 -79216676 + MER20 DNA MER1_type 1 216 -3 2360 91 0 7 chr15 6479713 6480010 -79215744 - AluSx SINE Alu -17 295 1 1903 172 13 0 chr15 6480531 6480839 -79214915 + AluJb SINE Alu 1 312 0 186 43 0 0 chr15 6483575 6483598 -79212156 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1510 186 0 66 chr15 6483969 6484302 -79211452 + AluJo SINE Alu 1 311 -1 2476 56 0 7 chr15 6484668 6484970 -79210784 - AluY SINE Alu -11 300 1 1297 60 72 0 chr15 6485215 6485381 -79210373 - AluY SINE Alu -14 297 120 1034 158 82 0 chr15 6485509 6485705 -79210049 + MER20 DNA MER1_type 8 219 0 1182 168 40 128 chr15 6486640 6486961 -79208793 + AluJo SINE Alu 1 293 -9 447 272 106 57 chr15 6487519 6487884 -79207870 + L1ME LINE L1 4637 5025 -1121 1612 190 7 23 chr15 6488146 6488446 -79207308 + AluJo SINE Alu 4 298 -14 269 308 111 31 chr15 6488466 6488598 -79207156 + L1ME LINE L1 5310 5430 -691 2266 103 0 0 chr15 6488598 6488889 -79206865 + AluSc SINE Alu 1 291 -18 269 308 111 31 chr15 6488889 6489171 -79206583 + L1ME LINE L1 5430 5757 -364 245 280 116 37 chr15 6489531 6489720 -79206034 + L1M4 LINE L1 3661 3864 -2282 1849 160 0 17 chr15 6491262 6491588 -79204166 + AluSx SINE Alu 1 321 0 234 218 13 51 chr15 6492276 6492354 -79203400 - MER20 DNA MER1_type 0 219 145 259 159 0 0 chr15 6492480 6492524 -79203230 + MER96B DNA MER1_type? 191 234 -183 985 147 0 7 chr15 6493355 6493534 -79202220 + AluSg/x SINE Alu 132 309 0 2417 63 0 13 chr15 6493743 6494044 -79201710 + AluY SINE Alu 1 297 -14 1565 188 43 0 chr15 6494507 6494626 -79201128 + AluJo SINE Alu 3 115 -197 234 0 0 0 chr15 6494626 6494652 -79201102 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1565 188 43 0 chr15 6494652 6494814 -79200940 + AluJo SINE Alu 115 296 -16 234 250 42 0 chr15 6496321 6496393 -79199361 + MIR SINE MIR 117 191 -71 35 41 0 0 chr15 6497505 6497554 -79198200 + AT_rich Low_complexity Low_complexity 1 49 0 1048 210 113 0 chr15 6498115 6498406 -79197348 - MER33 DNA MER1_type 0 324 1 1909 149 13 7 chr15 6498601 6498909 -79196845 - AluJb SINE Alu -2 310 1 336 48 0 0 chr15 6498959 6499001 -79196753 + (TG)n Simple_repeat Simple_repeat 1 42 0 725 198 23 109 chr15 6499708 6499877 -79195877 + LTR41 LTR ERVL 482 615 -158 2133 114 3 16 chr15 6499877 6500046 -79195708 - AluSx SINE Alu -10 302 137 2304 65 14 3 chr15 6500046 6500339 -79195415 - AluY SINE Alu -15 296 1 2133 114 3 16 chr15 6500339 6500475 -79195279 - AluSx SINE Alu -175 137 1 725 198 23 109 chr15 6500475 6500608 -79195146 + LTR41 LTR ERVL 615 758 -15 965 190 0 22 chr15 6501953 6502132 -79193622 - AluJb SINE Alu -4 308 134 2335 99 0 3 chr15 6502138 6502440 -79193314 - AluSx SINE Alu -11 301 1 362 312 163 47 chr15 6502859 6503221 -79192533 + L2 LINE L2 2824 3227 -86 2548 59 0 3 chr15 6503238 6503545 -79192209 + AluY SINE Alu 1 306 -5 3378 89 35 8 chr15 6504062 6504570 -79191184 + L1PA14 LINE L1 5640 6161 0 1152 143 107 14 chr15 6504678 6504894 -79190860 - MER46A DNA MER2_type 0 236 1 1622 140 104 3 chr15 6505053 6505360 -79190394 + MER7A DNA MER2_type 11 346 0 244 231 123 0 chr15 6506516 6506581 -79189173 - MER58A DNA MER1_type -32 75 3 292 271 146 0 chr15 6507102 6507198 -79188556 - MIR SINE MIR -125 137 28 2147 121 39 100 chr15 6507855 6508317 -79187437 + Tigger2a DNA MER2_type 1 434 0 4587 123 36 10 chr15 6509367 6510146 -79185608 - L1MA9 LINE L1 -2 6310 5512 2275 101 0 3 chr15 6510415 6510713 -79185041 - AluSx SINE Alu -15 297 1 693 183 111 7 chr15 6510863 6511016 -79184738 + MER58A DNA MER1_type 47 215 -9 677 195 0 23 chr15 6513002 6513130 -79182624 - FLAM_A SINE Alu -8 125 1 2194 108 7 7 chr15 6513716 6514013 -79181741 + AluSg SINE Alu 1 297 -13 280 252 148 9 chr15 6514254 6514369 -79181385 - L2 LINE L2 -1 3312 3182 639 311 153 53 chr15 6514726 6515542 -79180212 - L2 LINE L2 -666 2648 1751 1503 203 0 7 chr15 6515836 6516117 -79179637 + AluJb SINE Alu 1 279 -33 246 32 0 0 chr15 6516117 6516148 -79179606 + (CAA)n Simple_repeat Simple_repeat 2 32 0 251 253 92 23 chr15 6519590 6519677 -79176077 + L1MB8 LINE L1 5562 5654 -467 4653 122 98 61 chr15 6519831 6520392 -79175362 + Tigger3b DNA MER2_type 1 540 -2488 1673 153 51 0 chr15 6520392 6520667 -79175087 + AluSx SINE Alu 1 289 -23 1690 68 135 41 chr15 6520671 6520937 -79174817 + AluY SINE Alu 21 311 0 4653 122 98 61 chr15 6520937 6521396 -79174358 + Tigger3b DNA MER2_type 542 1064 -167 1567 179 57 3 chr15 6521400 6521701 -79174053 - MER7A DNA MER2_type -31 315 1 2498 71 0 0 chr15 6521751 6522048 -79173706 + AluY SINE Alu 1 297 -14 508 264 110 72 chr15 6522624 6522996 -79172758 - MER113 DNA MER1_type? -1 520 123 1904 164 0 10 chr15 6522996 6523294 -79172460 - AluJo SINE Alu -17 295 1 508 264 110 72 chr15 6523294 6523422 -79172332 - MER113 DNA MER1_type? -398 123 1 1561 196 66 17 chr15 6524583 6524991 -79170763 + L1MB8 LINE L1 5741 6168 -10 3815 188 21 7 chr15 6525129 6525852 -79169902 + MER44D DNA MER2_type 1 605 0 390 316 70 41 chr15 6525999 6526556 -79169198 + L1M4 LINE L1 3370 3942 -2204 3195 244 58 24 chr15 6526609 6527673 -79168081 - Charlie1a DNA MER1_type -349 1106 7 22 0 0 0 chr15 6527708 6527730 -79168024 + AT_rich Low_complexity Low_complexity 1 22 0 722 208 19 42 chr15 6527867 6528083 -79167671 + L1MC/D LINE L1 5533 5743 -2065 303 293 46 69 chr15 6528442 6528616 -79167138 + MER5B DNA MER1_type 7 176 -2 231 377 9 9 chr15 6528956 6529070 -79166684 + L2 LINE L2 2948 3061 -211 1730 244 17 28 chr15 6529296 6529768 -79165986 + LTR31 LTR ERV1 115 581 -38 243 0 0 0 chr15 6530169 6530196 -79165558 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3388 144 17 6 chr15 6530290 6530811 -79164943 - MER1A DNA MER1_type 0 527 1 6078 174 32 8 chr15 6531132 6532428 -79163326 + L1PA13 LINE L1 3049 4375 -1771 4763 110 80 25 chr15 6532429 6533218 -79162536 + L1PA13 LINE L1 4646 5390 -773 2273 110 0 0 chr15 6533218 6533518 -79162236 + AluSq SINE Alu 1 300 -13 4763 110 80 25 chr15 6533518 6534185 -79161569 + L1PA13 LINE L1 5390 6152 -11 2136 104 13 13 chr15 6534528 6534826 -79160928 - AluSq SINE Alu -15 298 1 372 284 183 41 chr15 6534826 6535094 -79160660 + HAL1b LINE L1 493 798 -550 514 204 120 7 chr15 6535554 6535696 -79160058 + MER58B DNA MER1_type 181 338 -3 236 319 29 0 chr15 6536024 6536093 -79159661 - MIR3 SINE MIR -10 198 128 * 255 298 220 21 chr15 6536089 6536230 -79159524 + MIR3 SINE MIR 36 204 -4 1708 168 14 20 chr15 6536731 6537023 -79158731 - AluJo SINE Alu -17 295 6 469 121 61 0 chr15 6537336 6537435 -79158319 - L1MB8 LINE L1 -3 6175 6071 1032 221 8 0 chr15 6537440 6537689 -79158065 + L1M4 LINE L1 4907 5157 -989 * 3323 180 78 4 chr15 6537686 6538536 -79157218 - L1MB8 LINE L1 -115 6063 5153 2333 211 104 42 chr15 6538698 6538862 -79156892 + L1ME1 LINE L1 5287 5439 -727 1956 115 11 0 chr15 6538862 6539132 -79156622 - AluSx SINE Alu -38 274 2 2333 211 104 42 chr15 6539132 6539172 -79156582 + L1ME1 LINE L1 5439 5475 -691 1248 171 54 0 chr15 6539172 6539394 -79156360 - MER46A DNA MER2_type 0 236 3 2333 211 104 42 chr15 6539394 6540017 -79155737 + L1ME1 LINE L1 5475 6166 0 21 57 0 0 chr15 6540025 6540060 -79155694 + AT_rich Low_complexity Low_complexity 1 35 0 2412 67 0 7 chr15 6540279 6540577 -79155177 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 6540586 6540607 -79155147 + AT_rich Low_complexity Low_complexity 1 21 0 226 359 31 31 chr15 6540888 6541016 -79154738 - MIR SINE MIR -119 143 16 2712 7 0 0 chr15 6542326 6542623 -79153131 - AluYa5 SINE Alu -14 297 1 1353 67 130 24 chr15 6542645 6542853 -79152901 + MER30 DNA MER1_type 1 230 0 1673 139 139 9 chr15 6544123 6544447 -79151307 + MER47A DNA MER2_type 1 366 0 249 303 0 50 chr15 6545803 6545902 -79149852 + MIR3 SINE MIR 115 208 0 207 0 0 0 chr15 6546392 6546415 -79149339 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 290 110 82 55 chr15 6546515 6546588 -79149166 - MADE1 DNA Mariner 0 80 6 184 306 122 20 chr15 6547456 6547554 -79148200 - L2 LINE L2 -1884 1430 1323 195 171 49 49 chr15 6547560 6547601 -79148153 - L2 LINE L2 -73 3240 3200 500 204 12 126 chr15 6548350 6548605 -79147149 + L1MC4a LINE L1 6044 6269 -1539 24 67 0 0 chr15 6548618 6548663 -79147091 + AT_rich Low_complexity Low_complexity 1 45 0 2149 129 7 0 chr15 6548848 6549151 -79146603 + AluSx SINE Alu 1 305 -7 435 266 38 22 chr15 6549151 6549335 -79146419 + L1ME3A LINE L1 5939 6125 -45 1074 196 28 40 chr15 6549483 6549810 -79145944 + L1MC5 LINE L1 7003 7325 -636 550 173 4 9 chr15 6549810 6549920 -79145834 + MER33 DNA MER1_type 1 100 -88 447 172 69 28 chr15 6549978 6550123 -79145631 + MER33 DNA MER1_type 88 238 -86 239 224 86 9 chr15 6550175 6550291 -79145463 + L1MC5 LINE L1 7344 7468 -493 2132 105 3 7 chr15 6550426 6550722 -79145032 + AluSq SINE Alu 1 295 -18 672 182 0 0 chr15 6550893 6551014 -79144740 - MER46A DNA MER2_type -94 142 22 474 246 41 35 chr15 6551036 6551207 -79144547 + L1MC5 LINE L1 7753 7924 -37 194 293 24 30 chr15 6551592 6551706 -79144048 - L2 LINE L2 -248 3024 2914 426 317 55 35 chr15 6551711 6551910 -79143844 - L2 LINE L2 -2 3311 3109 273 294 66 116 chr15 6551956 6552334 -79143420 - L2 LINE L2 -411 2903 2545 288 0 0 0 chr15 6552722 6552754 -79143000 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 183 80 0 0 chr15 6552785 6552810 -79142944 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 242 215 75 47 chr15 6553112 6553219 -79142535 + L1ME3A LINE L1 6061 6170 0 411 268 87 22 chr15 6553243 6553381 -79142373 + Charlie8 DNA MER1_type 97 243 -2174 489 236 108 32 chr15 6553535 6553692 -79142062 + MIR SINE MIR 78 246 -16 468 207 61 61 chr15 6554309 6554473 -79141281 + L1ME3A LINE L1 5787 5950 -220 448 266 169 0 chr15 6554602 6554756 -79140998 + L2 LINE L2 3127 3306 -7 1802 132 0 59 chr15 6556875 6557179 -79138575 - AluSx SINE Alu -13 299 14 6431 67 5 46 chr15 6557652 6558886 -79136868 + L1PA8 LINE L1 4970 6166 -6 1878 101 36 42 chr15 6559362 6559668 -79136086 - AluSg SINE Alu -6 304 1 1888 111 0 4 chr15 6559671 6559932 -79135822 - AluSx SINE Alu -3 309 50 504 257 138 13 chr15 6560188 6560340 -79135414 + MIR SINE MIR 66 236 -26 266 314 101 6 chr15 6560703 6560933 -79134821 + L1ME LINE L1 5561 5647 -474 184 214 48 0 chr15 6561076 6561118 -79134636 + MIR SINE MIR 198 241 -21 512 312 136 55 chr15 6562450 6563374 -79132380 + L1M2 LINE L1 388 1295 -5554 247 131 0 33 chr15 6563375 6563436 -79132318 + (CGGGG)n Simple_repeat Simple_repeat 1 59 0 1278 204 23 3 chr15 6564734 6565038 -79130716 - L1M4 LINE L1 -970 5176 4867 528 214 58 30 chr15 6565376 6565654 -79130100 + MER33 DNA MER1_type 10 363 0 290 244 25 101 chr15 6565868 6565987 -79129767 + L2 LINE L2 3204 3313 0 203 331 16 33 chr15 6566320 6566441 -79129313 + MER5A DNA MER1_type 3 121 -68 716 179 33 26 chr15 6566521 6566672 -79129082 + MER58B DNA MER1_type 187 338 -3 7898 158 59 34 chr15 6566848 6567481 -79128273 - L1MA3 LINE L1 0 6305 5689 2047 115 10 7 chr15 6567481 6567776 -79127978 - AluSx SINE Alu -16 296 1 7898 158 59 34 chr15 6567776 6567859 -79127895 - L1MA3 LINE L1 -616 5689 5610 2025 89 96 0 chr15 6567859 6568141 -79127613 - AluY SINE Alu -2 309 1 7898 158 59 34 chr15 6568141 6569298 -79126456 - L1MA3 LINE L1 -695 5610 4483 180 0 0 0 chr15 6569298 6569318 -79126436 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 7898 158 59 34 chr15 6569318 6569862 -79125892 - L1MA3 LINE L1 -1822 4483 3791 2295 130 80 8 chr15 6569862 6570261 -79125493 - MSTA LTR MaLR 0 428 1 7898 158 59 34 chr15 6570261 6570556 -79125198 - L1MA3 LINE L1 -2514 3791 3505 4064 218 74 63 chr15 6571229 6571590 -79124164 + L1M4 LINE L1 3041 3396 -2750 1970 134 24 0 chr15 6571590 6571880 -79123874 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr15 6571889 6571912 -79123842 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4064 218 74 63 chr15 6571912 6573596 -79122158 + L1M4 LINE L1 3403 5000 -1146 2045 142 0 3 chr15 6573596 6573898 -79121856 - AluSx SINE Alu -11 301 1 4064 218 74 63 chr15 6573898 6574232 -79121522 + L1M4 LINE L1 5000 5329 -817 1545 94 5 0 chr15 6574335 6574536 -79121218 + AluSq SINE Alu 84 285 -28 324 0 0 0 chr15 6574536 6574572 -79121182 + (CAT)n Simple_repeat Simple_repeat 2 37 0 606 128 53 0 chr15 6574572 6574666 -79121088 + FLAM_C SINE Alu 31 129 -14 22 35 0 0 chr15 6575029 6575058 -79120696 + AT_rich Low_complexity Low_complexity 1 29 0 301 234 13 0 chr15 6576121 6576198 -79119556 + L1MB2 LINE L1 6093 6170 -1 624 250 58 16 chr15 6576854 6577042 -79118712 + MER45C DNA AcHobo 17 212 -741 378 239 110 9 chr15 6577245 6577354 -79118400 + MER45C DNA AcHobo 470 589 -364 1359 168 72 0 chr15 6577639 6577901 -79117853 + MER45B DNA AcHobo 713 993 -47 331 294 155 46 chr15 6578340 6578738 -79117016 - L1MC4a LINE L1 -297 5824 5433 2114 118 3 0 chr15 6578826 6578995 -79116759 - AluSx SINE Alu -14 298 126 180 0 0 0 chr15 6578995 6579015 -79116739 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2114 118 3 0 chr15 6579015 6579142 -79116612 - AluSx SINE Alu -186 126 1 775 171 105 7 chr15 6579195 6579347 -79116407 - L1MD3 LINE L1 -15 7980 7814 195 42 0 0 chr15 6579719 6579743 -79116011 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr15 6580094 6580129 -79115625 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr15 6580399 6580443 -79115311 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 6580559 6580608 -79115146 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 6580769 6580791 -79114963 + AT_rich Low_complexity Low_complexity 1 22 0 1072 238 142 114 chr15 6580803 6582039 -79113715 + L1MC5 LINE L1 6637 7906 -55 665 286 172 29 chr15 6582117 6582593 -79113161 + MLT1H LTR MaLR 6 549 0 1981 146 10 3 chr15 6583489 6583784 -79111970 - AluSx SINE Alu -15 297 1 21 57 0 0 chr15 6583931 6583966 -79111788 + AT_rich Low_complexity Low_complexity 1 35 0 2493 50 7 0 chr15 6583966 6584263 -79111491 - AluY SINE Alu -12 299 1 2100 106 7 7 chr15 6584309 6584602 -79111152 - AluSg1 SINE Alu -16 293 1 992 104 0 7 chr15 6585605 6585749 -79110005 + FRAM SINE Alu 20 162 -14 318 67 0 0 chr15 6585969 6586014 -79109740 + (GA)n Simple_repeat Simple_repeat 1 45 0 2251 75 14 0 chr15 6586357 6586651 -79109103 - AluY SINE Alu -13 298 1 1250 176 42 139 chr15 6586721 6587125 -79108629 + MLT1A1 LTR MaLR 1 365 0 2045 94 4 7 chr15 6587385 6587660 -79108094 + AluSp SINE Alu 29 302 -11 4261 204 62 44 chr15 6588179 6588223 -79107531 - L1MD2 LINE L1 -9 6350 6308 2094 158 0 0 chr15 6588223 6588527 -79107227 + AluSx SINE Alu 1 304 -8 4261 204 62 44 chr15 6588527 6588685 -79107069 - L1MD2 LINE L1 -51 6308 6154 251 27 0 27 chr15 6588685 6588722 -79107032 + (TG)n Simple_repeat Simple_repeat 1 36 0 4261 204 62 44 chr15 6588722 6589073 -79106681 - L1MD2 LINE L1 -205 6154 5811 2552 62 0 0 chr15 6589073 6589378 -79106376 - AluY SINE Alu -6 305 1 4261 204 62 44 chr15 6589378 6589440 -79106314 - L1MD2 LINE L1 -548 5811 5752 1728 179 13 19 chr15 6589440 6589753 -79106001 + AluJo SINE Alu 1 311 -1 4261 204 62 44 chr15 6589753 6590442 -79105312 - L1MD2 LINE L1 -607 5752 5022 231 337 33 0 chr15 6590836 6590928 -79104826 - L2 LINE L2 -40 3273 3179 238 113 19 38 chr15 6591780 6591833 -79103921 + CT-rich Low_complexity Low_complexity 1 52 0 3636 147 21 20 chr15 6592166 6592770 -79102984 - MER6A DNA MER2_type 0 605 1 2522 70 3 3 chr15 6593255 6593568 -79102186 - AluSp SINE Alu 0 313 1 518 259 84 93 chr15 6593660 6594089 -79101665 - L2 LINE L2 -70 3243 2819 340 145 4 49 chr15 6594123 6594178 -79101576 - Alu SINE Alu -1 300 258 1834 107 52 0 chr15 6594178 6594448 -79101306 - AluSx SINE Alu -28 284 1 340 145 4 49 chr15 6594448 6594468 -79101286 - Alu SINE Alu -43 258 239 1838 275 104 14 chr15 6594475 6595174 -79100580 - L2 LINE L2 -628 2686 1925 1976 99 10 7 chr15 6595604 6595897 -79099857 + AluSc SINE Alu 1 294 -15 2298 70 0 3 chr15 6596722 6597032 -79098722 + AluY SINE Alu 1 309 0 216 205 0 0 chr15 6597103 6597142 -79098612 - L2 LINE L2 -10 3303 3265 1348 145 9 14 chr15 6597170 6597391 -79098363 - AluJb SINE Alu -3 309 90 2128 201 37 80 chr15 6597393 6597582 -79098172 - L1M4 LINE L1 -2937 3209 3014 2296 97 0 0 chr15 6597582 6597882 -79097872 + AluY SINE Alu 1 300 -11 2128 201 37 80 chr15 6597882 6598497 -79097257 - L1M4 LINE L1 -3132 3014 2439 2364 91 3 0 chr15 6598658 6598956 -79096798 + AluSc SINE Alu 1 299 -10 269 142 124 159 chr15 6599385 6599498 -79096256 + MLT1F1 LTR MaLR 1 109 -458 30 27 0 0 chr15 6599498 6599535 -79096219 + AT_rich Low_complexity Low_complexity 1 37 0 1944 134 10 33 chr15 6599535 6599840 -79095914 + AluSx SINE Alu 1 298 -14 752 179 27 0 chr15 6599840 6599952 -79095802 - AluJo/FLAM SINE Alu -196 116 2 1439 212 42 111 chr15 6599954 6600404 -79095350 + MLT1F1 LTR MaLR 94 507 -60 2313 85 7 19 chr15 6600404 6600711 -79095043 - AluSg SINE Alu -7 303 1 1439 212 42 111 chr15 6600711 6600765 -79094989 + MLT1F1 LTR MaLR 507 563 -4 799 172 0 22 chr15 6600777 6600911 -79094843 + FLAM_C SINE Alu 2 132 -11 915 249 75 31 chr15 6600921 6600932 -79094822 + L1MD2 LINE L1 3151 3160 -2986 2075 154 0 0 chr15 6600932 6601237 -79094517 + AluSx SINE Alu 1 305 -7 915 249 75 31 chr15 6601237 6601638 -79094116 + L1MD2 LINE L1 3160 3581 -2565 * 4627 206 53 31 chr15 6601627 6602704 -79093050 + L1MD2 LINE L1 4588 5711 -648 2301 81 20 0 chr15 6602704 6603001 -79092753 + AluSp SINE Alu 1 303 -10 4627 206 53 31 chr15 6603001 6603635 -79092119 + L1MD2 LINE L1 5711 6329 -30 1014 229 86 67 chr15 6604332 6604778 -79090976 + MLT1C LTR MaLR 1 458 -9 746 107 14 29 chr15 6605477 6605617 -79090137 + L1MA4 LINE L1 6160 6297 -3 2164 108 10 0 chr15 6605651 6605946 -79089808 + AluSx SINE Alu 1 298 -14 2145 139 25 79 chr15 6606055 6606220 -79089534 + L1MB7 LINE L1 5663 5835 -349 618 138 165 18 chr15 6606220 6606329 -79089425 + FLAM_A SINE Alu 1 125 -8 2145 139 25 79 chr15 6606329 6606595 -79089159 + L1MB7 LINE L1 5835 6071 -113 462 216 11 0 chr15 6606678 6606766 -79088988 - MER2 DNA MER2_type 0 345 257 994 69 0 0 chr15 6606766 6606882 -79088872 + AluY SINE Alu 1 116 -195 522 78 0 0 chr15 6606883 6606947 -79088807 + Alu SINE Alu 231 294 -15 1658 165 4 0 chr15 6606949 6607210 -79088544 - MER2 DNA MER2_type -82 263 2 361 78 20 0 chr15 6607406 6607457 -79088297 - MER75 DNA T2_type 0 504 453 2246 100 0 3 chr15 6607847 6608137 -79087617 - AluSq SINE Alu -24 289 1 1840 177 0 7 chr15 6608193 6608493 -79087261 + AluJb SINE Alu 1 298 -14 338 264 0 0 chr15 6608517 6608604 -79087150 - L2 LINE L2 -4 3268 3182 1772 139 7 17 chr15 6608623 6608911 -79086843 - AluJb SINE Alu -17 295 11 703 191 22 15 chr15 6608930 6609066 -79086688 - AluJb SINE Alu -174 138 2 1513 176 3 30 chr15 6610502 6610797 -79084957 - L1MB7 LINE L1 -185 5999 5713 726 212 15 0 chr15 6610800 6610937 -79084817 + Tigger1 DNA MER2_type 1 139 -2279 * 1122 154 32 41 chr15 6610933 6611154 -79084600 + Tigger1 DNA MER2_type 2200 2418 0 2299 158 21 76 chr15 6611154 6611472 -79084282 - L1MB7 LINE L1 -466 5712 5378 997 72 29 22 chr15 6611472 6611610 -79084144 + MER85 DNA T2_type 1 139 0 2299 158 21 76 chr15 6611610 6612168 -79083586 - L1MB7 LINE L1 -800 5378 4903 298 202 0 0 chr15 6612193 6612249 -79083505 - MIR3 SINE MIR -50 158 102 237 65 0 0 chr15 6612709 6612740 -79083014 + (T)n Simple_repeat Simple_repeat 1 31 0 2128 102 0 3 chr15 6612897 6613201 -79082553 + AluSx SINE Alu 3 305 0 282 220 0 0 chr15 6613328 6613387 -79082367 + Charlie8 DNA MER1_type 33 91 -2326 297 140 20 0 chr15 6613471 6613521 -79082233 + Charlie8 DNA MER1_type 1374 1424 -993 1458 92 0 83 chr15 6613994 6614223 -79081531 + AluSg SINE Alu 1 210 -100 309 323 21 0 chr15 6614290 6614383 -79081371 + L2 LINE L2 3153 3247 -25 185 262 82 16 chr15 6615797 6615858 -79079896 - L2 LINE L2 -41 3231 3167 1427 180 20 56 chr15 6617508 6617656 -79078098 + AluJo SINE Alu 1 134 -178 1988 159 0 7 chr15 6617656 6617958 -79077796 + AluJo SINE Alu 1 300 -12 1427 180 20 56 chr15 6617958 6618114 -79077640 + AluJo SINE Alu 134 294 -18 214 317 61 0 chr15 6618394 6618476 -79077278 + L2 LINE L2 3185 3271 -1 309 277 31 23 chr15 6618939 6619069 -79076685 + L1M4 LINE L1 4904 5034 -1112 2200 76 0 96 chr15 6619678 6620022 -79075732 - AluSx SINE Alu -1 311 1 28 29 0 0 chr15 6624554 6624589 -79071165 + AT_rich Low_complexity Low_complexity 1 35 0 2348 96 3 0 chr15 6625444 6625746 -79070008 - AluSg SINE Alu -7 303 1 641 220 100 13 chr15 6625846 6625996 -79069758 - MER3 DNA MER1_type 0 209 47 1551 83 69 14 chr15 6626026 6626120 -79069634 - MER30 DNA MER1_type -1 229 142 2379 94 0 3 chr15 6626120 6626417 -79069337 + AluSx SINE Alu 1 296 -16 1551 83 69 14 chr15 6626417 6626539 -79069215 - MER30 DNA MER1_type -88 142 1 1782 159 20 17 chr15 6627101 6627403 -79068351 - AluJb SINE Alu -9 303 1 2238 76 7 33 chr15 6627410 6627849 -79067905 - AluSg SINE Alu 0 431 1 2247 67 7 3 chr15 6627926 6628232 -79067522 - AluY SINE Alu 0 307 1 2416 74 0 6 chr15 6628725 6629036 -79066718 + AluSc SINE Alu 1 309 0 1342 174 5 5 chr15 6629591 6629810 -79065944 - AluSg/x SINE Alu -9 303 85 6183 142 25 22 chr15 6630157 6631313 -79064441 - L1MA10 LINE L1 -4 6330 5171 259 306 97 15 chr15 6631340 6631474 -79064280 + MIR SINE MIR 10 154 -108 222 62 0 0 chr15 6631817 6631849 -79063905 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 6633607 6633628 -79062126 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 22 0 0 0 chr15 6633701 6633723 -79062031 + AT_rich Low_complexity Low_complexity 1 22 0 205 236 164 73 chr15 6634116 6634146 -79061608 - MIR3 SINE MIR -25 183 157 464 321 38 11 chr15 6634146 6634330 -79061424 + MER5A DNA MER1_type 1 189 0 205 236 164 73 chr15 6634330 6634409 -79061345 - MIR3 SINE MIR -51 157 64 27 62 0 0 chr15 6636157 6636205 -79059549 + AT_rich Low_complexity Low_complexity 1 48 0 878 163 14 0 chr15 6636349 6636496 -79059258 + FAM SINE Alu 21 169 -16 399 296 208 26 chr15 6636511 6636963 -79058791 + L1ME LINE L1 4310 4843 -1303 365 79 40 13 chr15 6637125 6637195 -79058559 + (TA)n Simple_repeat Simple_repeat 2 74 0 2197 101 7 3 chr15 6637195 6637483 -79058271 - AluSq SINE Alu -24 289 1 643 209 71 75 chr15 6637708 6637975 -79057779 + L1ME LINE L1 5523 5784 -337 39 60 0 0 chr15 6638052 6638119 -79057635 + AT_rich Low_complexity Low_complexity 1 67 0 196 132 0 57 chr15 6638136 6638189 -79057565 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 211 182 0 0 chr15 6638227 6638260 -79057494 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 309 36 0 chr15 6639493 6639577 -79056177 + LTR67 LTR ERVL 107 193 -364 193 95 0 143 chr15 6641157 6641199 -79054555 + L3b LINE CR1 1540 1575 -8 16546 121 22 11 chr15 6641339 6643730 -79052024 + Tigger1 DNA MER2_type 1 2417 -1 2043 146 0 0 chr15 6644058 6644346 -79051408 + AluSx SINE Alu 1 288 -24 286 125 21 0 chr15 6644397 6644445 -79051309 - MLT1A2 LTR MaLR 0 374 326 5302 198 97 41 chr15 6644446 6645673 -79050081 - MLT1A1-int LTR MaLR -439 1296 1 1808 179 36 30 chr15 6645673 6646012 -79049742 - MLT1A1 LTR MaLR 0 365 29 2352 141 28 19 chr15 6646012 6646373 -79049381 + THE1B LTR MaLR 1 364 0 12594 84 9 9 chr15 6646373 6647954 -79047800 + THE1B-int LTR MaLR 1 1580 0 2437 137 28 14 chr15 6647954 6648313 -79047441 + THE1B LTR MaLR 1 364 0 1808 179 36 30 chr15 6648313 6648334 -79047420 - MLT1A1 LTR MaLR -335 30 1 477 227 100 47 chr15 6648475 6648625 -79047129 - MER46A DNA MER2_type -78 158 1 * 1107 181 60 9 chr15 6648491 6648707 -79047047 + MER46A DNA MER2_type 1 227 -9 205 306 88 31 chr15 6649391 6649551 -79046203 + MIR SINE MIR 20 188 -74 1032 254 155 32 chr15 6649725 6650506 -79045248 - L2 LINE L2 0 3313 2434 291 316 45 82 chr15 6650635 6650879 -79044875 - L2 LINE L2 -13 3259 3025 2346 94 3 0 chr15 6651420 6651718 -79044036 + AluSx SINE Alu 1 299 -13 1687 100 0 0 chr15 6652634 6652854 -79042900 + AluSc SINE Alu 1 220 -89 2535 48 0 0 chr15 6653332 6653624 -79042130 - AluY SINE Alu -19 292 1 671 315 133 0 chr15 6654034 6654336 -79041418 - L2 LINE L2 -509 2805 2464 266 244 13 32 chr15 6654411 6654531 -79041223 + L1ME4a LINE L1 5325 5429 -737 1713 180 103 28 chr15 6654577 6655005 -79040749 + MLT1C LTR MaLR 6 465 -2 785 306 68 16 chr15 6655008 6655315 -79040439 + L1ME4a LINE L1 5484 5806 -315 4414 140 32 29 chr15 6655318 6656069 -79039685 + L1MC1 LINE L1 5570 6322 -11 2165 100 21 0 chr15 6656071 6656350 -79039404 + AluSx SINE Alu 1 285 -27 34 42 0 0 chr15 6656374 6656422 -79039332 + AT_rich Low_complexity Low_complexity 1 48 0 829 100 0 0 chr15 6656455 6656565 -79039189 - AluSg/x SINE Alu -8 304 195 490 189 5 55 chr15 6656681 6656821 -79038933 + L1MC4 LINE L1 7845 8042 0 2376 87 0 0 chr15 6656836 6657134 -79038620 + AluY SINE Alu 1 298 -13 351 258 132 13 chr15 6657148 6657307 -79038447 + L1ME4a LINE L1 5939 6116 -5 471 248 48 28 chr15 6657658 6657803 -79037951 + HAL1 LINE L1 1047 1194 -1313 1122 196 97 33 chr15 6657856 6658187 -79037567 + HAL1 LINE L1 1296 1647 -860 491 261 200 74 chr15 6658208 6658445 -79037309 + MLT1L LTR MaLR 5 211 -404 2148 117 0 19 chr15 6658445 6658581 -79037173 + AluSx SINE Alu 1 138 -174 2491 67 0 10 chr15 6658581 6658895 -79036859 + AluY SINE Alu 1 311 0 2148 117 0 19 chr15 6658895 6659066 -79036688 + AluSx SINE Alu 138 302 -10 491 261 200 74 chr15 6659066 6659287 -79036467 + MLT1L LTR MaLR 211 521 -94 2370 125 149 8 chr15 6661095 6661470 -79034284 - MSTA LTR MaLR 0 428 1 1768 181 54 25 chr15 6661673 6662027 -79033727 - MLT1A1 LTR MaLR 0 365 2 2056 113 41 0 chr15 6662136 6662429 -79033325 + AluSg SINE Alu 1 305 -5 481 181 55 48 chr15 6662440 6662586 -79033168 + L1ME1 LINE L1 6017 6162 -2 210 360 33 7 chr15 6662887 6663037 -79032717 - L2 LINE L2 -474 2840 2687 243 360 11 0 chr15 6663163 6663252 -79032502 + Charlie4 DNA MER1_type 1867 1956 -5 360 152 0 0 chr15 6664557 6664623 -79031131 + (CA)n Simple_repeat Simple_repeat 2 67 0 1960 87 20 0 chr15 6665711 6665965 -79029789 + AluSq SINE Alu 44 302 -11 355 292 179 40 chr15 6667140 6667469 -79028285 + HAL1 LINE L1 91 465 -2042 3348 137 16 2 chr15 6667525 6668030 -79027724 - L1MB3 LINE L1 -11 6172 5661 398 255 0 11 chr15 6668030 6668124 -79027630 + HAL1 LINE L1 811 903 -1604 1794 170 0 13 chr15 6668158 6668469 -79027285 + AluJb SINE Alu 1 307 -5 1199 244 132 9 chr15 6668472 6668927 -79026827 + HAL1 LINE L1 1104 1614 -893 603 221 202 54 chr15 6669085 6669402 -79026352 - L2 LINE L2 0 3313 2950 298 248 112 8 chr15 6669775 6669900 -79025854 - MIR SINE MIR -102 160 23 262 254 30 0 chr15 6670739 6670806 -79024948 + L1MC4a LINE L1 7739 7807 -1 200 278 262 0 chr15 6670833 6671024 -79024730 + L2 LINE L2 664 904 -2410 231 277 61 34 chr15 6671256 6671404 -79024350 - HAL1 LINE L1 -665 1842 1691 311 213 101 77 chr15 6671410 6671528 -79024226 - L1MC5 LINE L1 -36 7925 7800 2164 123 0 19 chr15 6671528 6671845 -79023909 - AluSq SINE Alu 0 313 3 311 213 101 77 chr15 6671845 6671895 -79023859 - L1MC5 LINE L1 -161 7800 7753 779 156 0 0 chr15 6671918 6672027 -79023727 + FLAM_C SINE Alu 18 126 -17 431 310 92 4 chr15 6672789 6673028 -79022726 + L1ME LINE L1 5561 5820 -301 233 329 13 0 chr15 6673036 6673112 -79022642 + L2 LINE L2 1177 1253 -2061 1616 125 101 87 chr15 6673171 6673538 -79022216 + L1MB8 LINE L1 5806 6177 -1 1523 159 34 23 chr15 6673807 6674071 -79021683 - AluJb SINE Alu -45 267 1 514 248 117 5 chr15 6674078 6674284 -79021470 + L1ME4a LINE L1 5713 5941 -180 203 345 0 0 chr15 6675181 6675239 -79020515 + MIR SINE MIR 90 147 -115 284 238 12 0 chr15 6675438 6675518 -79020236 - L1MB8 LINE L1 -2 6176 6096 2058 130 7 7 chr15 6676029 6676330 -79019424 + AluSq SINE Alu 1 301 -12 1908 121 0 0 chr15 6676785 6677041 -79018713 + AluSx SINE Alu 49 304 -8 989 267 48 22 chr15 6677960 6678275 -79017479 + L1ME LINE L1 5372 5694 -476 2555 50 3 0 chr15 6678361 6678661 -79017093 + AluY SINE Alu 1 301 -10 2742 278 129 45 chr15 6678838 6679114 -79016640 + L1M4 LINE L1 2773 3024 -3122 1882 161 0 0 chr15 6679114 6679405 -79016349 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr15 6679409 6679429 -79016325 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2742 278 129 45 chr15 6679429 6680632 -79015122 + L1M4 LINE L1 3026 4126 -2020 2906 122 23 25 chr15 6680632 6681067 -79014687 - Tigger2a DNA MER2_type 0 434 1 2742 278 129 45 chr15 6681067 6681378 -79014376 + L1M4 LINE L1 4126 4409 -1737 4437 77 18 0 chr15 6681378 6681922 -79013832 - MER41A LTR ERV1 0 554 1 2742 278 129 45 chr15 6681922 6682450 -79013304 + L1M4 LINE L1 4409 5295 -851 24 32 0 0 chr15 6682704 6682735 -79013019 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 170 20 chr15 6682891 6683244 -79012510 - L2 LINE L2 -997 2317 1912 23 0 0 0 chr15 6687076 6687099 -79008655 + AT_rich Low_complexity Low_complexity 1 23 0 2052 153 25 25 chr15 6689315 6689680 -79006074 + MLT1A1 LTR MaLR 1 365 0 222 329 114 25 chr15 6692626 6692784 -79002970 - L2 LINE L2 -10 3303 3132 2334 95 3 7 chr15 6693045 6693351 -79002403 + AluSg SINE Alu 1 305 -5 2230 114 0 0 chr15 6693364 6693654 -79002100 + AluSx SINE Alu 1 290 -22 2249 67 3 11 chr15 6693770 6694092 -79001662 - AluY SINE Alu 0 320 1 2535 230 184 22 chr15 6695357 6695474 -79000280 + L1MC4 LINE L1 6484 6581 -1461 294 29 0 0 chr15 6695474 6695509 -79000245 + (CA)n Simple_repeat Simple_repeat 2 36 0 2535 230 184 22 chr15 6695509 6696349 -78999405 + L1MC4 LINE L1 6581 7596 -446 184 270 81 40 chr15 6696423 6696497 -78999257 - L2 LINE L2 0 3313 3237 460 291 49 85 chr15 6697202 6697648 -78998106 + MLT1J LTR MaLR 5 434 -77 2131 104 10 0 chr15 6697686 6697975 -78997779 + AluSc SINE Alu 5 296 -13 252 290 65 19 chr15 6698408 6698515 -78997239 + MLT1K LTR MaLR 457 568 -20 449 203 0 6 chr15 6698612 6698775 -78996979 + (CCA)n Simple_repeat Simple_repeat 3 164 0 2829 190 55 4 chr15 6698879 6699783 -78995971 - L1MC2 LINE L1 -486 5927 4968 2211 95 7 3 chr15 6699784 6700078 -78995676 + AluSg SINE Alu 1 295 -15 1141 157 0 0 chr15 6700104 6700270 -78995484 - AluJb SINE Alu -144 168 3 804 248 5 0 chr15 6700272 6700470 -78995284 - L1MC2 LINE L1 -2404 3811 3613 914 122 0 6 chr15 6700655 6700836 -78994918 + (CCA)n Simple_repeat Simple_repeat 1 180 0 603 206 0 0 chr15 6700866 6701041 -78994713 + (CCA)n Simple_repeat Simple_repeat 3 177 0 312 208 0 0 chr15 6701058 6701154 -78994600 + (CCA)n Simple_repeat Simple_repeat 3 98 0 501 239 8 45 chr15 6701512 6701646 -78994108 + MIR SINE MIR 112 240 -22 2308 115 0 0 chr15 6701800 6702105 -78993649 - AluSx SINE Alu -7 305 1 218 79 0 26 chr15 6703270 6703308 -78992446 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2318 100 0 0 chr15 6703778 6704079 -78991675 - AluSx SINE Alu -11 301 1 29 90 0 0 chr15 6705351 6705429 -78990325 + AT_rich Low_complexity Low_complexity 1 78 0 2381 75 0 3 chr15 6705436 6705730 -78990024 + AluSg SINE Alu 1 293 -17 1554 135 0 12 chr15 6706176 6706421 -78989333 + AluJo SINE Alu 71 312 0 1507 158 29 40 chr15 6707242 6707520 -78988234 + AluJb SINE Alu 9 283 -29 958 248 83 73 chr15 6707936 6708525 -78987229 - L1ME4a LINE L1 -14 6107 5513 372 332 60 11 chr15 6708577 6708842 -78986912 - L1MC2 LINE L1 -3532 2683 2406 260 261 72 29 chr15 6708965 6709103 -78986651 - L1MC2 LINE L1 -4055 2341 2198 264 289 0 12 chr15 6709242 6709325 -78986429 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2303 95 0 3 chr15 6709623 6709927 -78985827 - AluY SINE Alu -8 303 1 21 0 0 0 chr15 6710715 6710736 -78985018 + AT_rich Low_complexity Low_complexity 1 21 0 1609 179 0 11 chr15 6711010 6711289 -78984465 + AluJo SINE Alu 23 298 -14 1351 13 0 0 chr15 6711969 6712119 -78983635 - AluYb8 SINE Alu -2 316 167 2384 84 0 7 chr15 6713494 6713793 -78981961 + AluSq SINE Alu 1 297 -16 214 258 114 30 chr15 6714010 6714142 -78981612 + MIR SINE MIR 120 262 0 2373 89 0 0 chr15 6714298 6714589 -78981165 - AluSc SINE Alu -18 291 1 506 195 81 16 chr15 6714744 6714867 -78980887 + MLT1C LTR MaLR 64 194 -311 24 32 0 0 chr15 6715006 6715037 -78980717 + AT_rich Low_complexity Low_complexity 1 31 0 712 191 24 154 chr15 6715064 6715310 -78980444 + MLT1C LTR MaLR 170 460 -7 2071 133 0 7 chr15 6715824 6716149 -78979605 - AluSx SINE Alu 0 323 1 1986 111 14 4 chr15 6716860 6717172 -78978582 + AluSq SINE Alu 3 317 0 599 235 33 66 chr15 6717238 6717451 -78978303 - L2 LINE L2 0 3313 3108 2015 95 9 76 chr15 6717656 6717972 -78977782 - AluSx SINE Alu -16 296 2 25 0 0 0 chr15 6717993 6718018 -78977736 + AT_rich Low_complexity Low_complexity 1 25 0 434 292 113 11 chr15 6718042 6718227 -78977527 - MIR SINE MIR -7 255 52 22 0 0 0 chr15 6719148 6719170 -78976584 + GC_rich Low_complexity Low_complexity 1 22 0 4268 169 105 53 chr15 6720104 6720240 -78975514 - Tigger6a DNA MER2_type -514 1083 955 1754 152 3 13 chr15 6720240 6720549 -78975205 + AluJo SINE Alu 3 308 -4 4268 169 105 53 chr15 6720549 6721337 -78974417 - Tigger6a DNA MER2_type -642 955 97 1850 151 0 21 chr15 6721337 6721655 -78974099 - AluJb SINE Alu 0 316 5 4268 169 105 53 chr15 6721655 6721757 -78973997 - Tigger6a DNA MER2_type -1500 97 2 210 119 0 48 chr15 6721763 6721805 -78973949 + (TA)n Simple_repeat Simple_repeat 2 41 0 6912 211 68 40 chr15 6722329 6724505 -78971249 + L1M4 LINE L1 37 2150 -4496 2448 86 0 0 chr15 6724505 6724806 -78970948 + AluY SINE Alu 1 301 -10 6912 211 68 40 chr15 6724806 6724818 -78970936 + L1M4 LINE L1 2150 2160 -4486 1900 155 27 0 chr15 6724818 6724939 -78970815 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr15 6724939 6724974 -78970780 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1900 155 27 0 chr15 6724974 6725149 -78970605 + AluJo SINE Alu 117 305 -7 6912 211 68 40 chr15 6725149 6725456 -78970298 + L1M4 LINE L1 2160 2699 -3947 829 230 45 45 chr15 6725453 6725766 -78969988 + L1M4 LINE L1 3539 3851 -2793 * 844 191 13 0 chr15 6725771 6725923 -78969831 + FRAM SINE Alu 1 40 0 415 209 17 9 chr15 6725923 6726038 -78969716 + GA-rich Low_complexity Low_complexity 4 119 0 349 269 15 8 chr15 6726041 6726175 -78969579 + L1M4 LINE L1 3881 4015 -2629 455 230 0 0 chr15 6726178 6726265 -78969489 + L2 LINE L2 3218 3304 -9 2170 114 0 0 chr15 6726460 6726749 -78969005 - AluSx SINE Alu -23 289 1 231 173 0 0 chr15 6726777 6726829 -78968925 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 225 79 0 chr15 6726829 6726918 -78968836 + MER112 DNA MER1_type 67 162 -98 647 312 50 80 chr15 6726918 6727307 -78968447 + L2 LINE L2 293 663 -2651 2518 53 0 0 chr15 6727307 6727606 -78968148 - AluY SINE Alu -12 299 1 647 312 50 80 chr15 6727606 6727751 -78968003 + L2 LINE L2 663 811 -2503 493 235 69 104 chr15 6727751 6728011 -78967743 - MER102a DNA MER1_type -2 328 78 266 271 110 88 chr15 6728128 6728158 -78967596 + HAL1 LINE L1 149 177 -2330 2481 52 3 13 chr15 6728158 6728464 -78967290 + AluY SINE Alu 1 303 -8 266 271 110 88 chr15 6728464 6728862 -78966892 + HAL1 LINE L1 177 622 -1885 708 255 47 56 chr15 6728906 6729247 -78966507 - HAL1 LINE L1 -335 2172 1835 481 30 30 0 chr15 6729248 6729315 -78966439 + (GA)n Simple_repeat Simple_repeat 2 70 0 234 95 0 48 chr15 6729318 6729360 -78966394 - MLT2C1 LTR ERVL -48 349 310 390 96 41 0 chr15 6729402 6729475 -78966279 + GA-rich Low_complexity Low_complexity 2 77 0 1588 184 34 24 chr15 6729478 6729806 -78965948 - MLT2D LTR ERVL -20 534 55 3444 275 113 44 chr15 6729884 6729985 -78965769 + L1ME3A LINE L1 1868 1961 -4254 2108 124 3 7 chr15 6729985 6730291 -78965463 - AluSq SINE Alu -8 305 1 3444 275 113 44 chr15 6730291 6730526 -78965228 + L1ME3A LINE L1 1961 2178 -4037 2345 95 0 0 chr15 6730526 6730821 -78964933 + AluY SINE Alu 9 303 -8 3444 275 113 44 chr15 6730821 6731911 -78963843 + L1ME3A LINE L1 2178 3192 -3023 501 230 22 65 chr15 6731911 6732050 -78963704 - MER94 DNA DNA 0 134 2 3444 275 113 44 chr15 6732050 6732448 -78963306 + L1ME3A LINE L1 3192 3561 -2654 1579 174 34 31 chr15 6732448 6732741 -78963013 + AluJo SINE Alu 1 294 -18 3444 275 113 44 chr15 6732741 6733361 -78962393 + L1ME3A LINE L1 3561 4137 -2078 3144 176 26 11 chr15 6733361 6733902 -78961852 - MER44D DNA MER2_type -1 604 1 3444 275 113 44 chr15 6733902 6734059 -78961695 + L1ME3A LINE L1 4137 4282 -1933 2281 79 28 0 chr15 6734059 6734350 -78961404 - AluSx SINE Alu -13 299 1 2488 64 0 0 chr15 6734359 6734657 -78961097 - AluY SINE Alu -11 300 3 3444 275 113 44 chr15 6734657 6735222 -78960532 + L1ME3A LINE L1 4289 5341 -874 2132 84 30 7 chr15 6735297 6735594 -78960160 + AluSg SINE Alu 1 304 -6 560 247 124 6 chr15 6735596 6735853 -78959901 + L1ME3A LINE L1 5365 5644 -595 558 262 48 6 chr15 6735862 6736030 -78959724 + LTR41 LTR ERVL 7 181 -592 369 250 47 123 chr15 6736280 6736556 -78959198 + LTR41 LTR ERVL 510 764 -9 861 273 54 24 chr15 6736592 6736926 -78958828 + L1ME3A LINE L1 5693 6036 -203 203 217 196 0 chr15 6737145 6737191 -78958563 - L2 LINE L2 -81 3191 3137 2098 142 0 0 chr15 6737241 6737588 -78958166 - AluJb SINE Alu 0 347 1 1489 243 105 101 chr15 6737651 6738009 -78957745 + L1MEd LINE L1 78 433 -5686 1920 151 0 7 chr15 6738009 6738300 -78957454 + AluSx SINE Alu 24 312 0 1489 243 105 101 chr15 6738300 6738810 -78956944 + L1MEd LINE L1 433 949 -5170 331 360 100 20 chr15 6739745 6739945 -78955809 + L2 LINE L2 3056 3271 -1 1081 211 100 106 chr15 6739989 6740501 -78955253 - MLT1J LTR MaLR 0 511 3 270 310 0 0 chr15 6741156 6741227 -78954527 - L2 LINE L2 -1 3312 3242 2561 60 0 0 chr15 6742336 6742637 -78953117 + AluY SINE Alu 1 301 -10 2069 116 0 0 chr15 6742639 6742924 -78952830 + AluSq SINE Alu 17 301 -12 316 308 122 51 chr15 6742987 6743176 -78952578 - L1ME LINE L1 -508 5654 5443 2289 108 0 3 chr15 6743176 6743482 -78952272 + AluSx SINE Alu 1 305 -7 316 308 122 51 chr15 6743482 6743529 -78952225 - L1ME LINE L1 -719 5443 5401 393 231 23 69 chr15 6743580 6743753 -78952001 - L1ME LINE L1 -874 5272 5108 4849 146 26 43 chr15 6745283 6745378 -78950376 + L1PB4 LINE L1 5254 5349 -954 1881 144 16 19 chr15 6745378 6745691 -78950063 - AluSx SINE Alu 0 312 1 4849 146 26 43 chr15 6745691 6745836 -78949918 + L1PB4 LINE L1 5349 5495 -808 2140 109 0 0 chr15 6745836 6746120 -78949634 - AluSg SINE Alu -26 284 1 4849 146 26 43 chr15 6746120 6746811 -78948943 + L1PB4 LINE L1 5495 6300 -3 2209 111 7 0 chr15 6747023 6747321 -78948433 + AluSx SINE Alu 1 300 -12 209 258 0 41 chr15 6747694 6747791 -78947963 + CT-rich Low_complexity Low_complexity 4 96 0 306 286 85 54 chr15 6747792 6748016 -78947738 - MLT1H-int LTR MaLR -832 539 309 297 278 26 9 chr15 6748024 6748139 -78947615 - MLT1H-int LTR MaLR -1250 121 5 1028 264 117 34 chr15 6748143 6748647 -78947107 - MLT1H LTR MaLR 0 549 4 433 351 50 32 chr15 6748807 6749089 -78946665 - L3 LINE CR1 -78 1499 1213 1484 121 0 5 chr15 6749568 6749775 -78945979 - L1PB1 LINE L1 -2 6149 5944 1973 161 0 19 chr15 6750500 6750817 -78944937 + AluJb SINE Alu 1 311 -1 796 172 11 11 chr15 6750832 6751006 -78944748 + GA-rich Low_complexity Low_complexity 4 177 0 2399 121 121 3 chr15 6751011 6751216 -78944538 + MSTB LTR MaLR 2 181 -245 201 39 0 0 chr15 6751216 6751242 -78944512 + (TC)n Simple_repeat Simple_repeat 1 26 0 2399 121 121 3 chr15 6751242 6751416 -78944338 + MSTB LTR MaLR 181 426 0 702 130 32 24 chr15 6751501 6751624 -78944130 + L1MB4 LINE L1 6057 6180 0 2365 99 0 6 chr15 6751632 6751944 -78943810 - AluSg SINE Alu 0 310 1 1967 122 0 4 chr15 6752929 6753208 -78942546 - AluSx SINE Alu -18 294 17 411 264 145 50 chr15 6753230 6753319 -78942435 - MER5A DNA MER1_type -7 182 103 2532 74 0 0 chr15 6753319 6753629 -78942125 - AluY SINE Alu -1 310 1 411 264 145 50 chr15 6753629 6753698 -78942056 - MER5A DNA MER1_type -86 103 9 293 322 38 2 chr15 6753934 6754044 -78941710 + MER20B DNA MER1_type 86 202 -17 191 250 0 0 chr15 6754112 6754156 -78941598 + L2 LINE L2 774 817 -2497 1653 162 10 43 chr15 6754676 6754978 -78940776 + AluJo SINE Alu 1 292 -20 326 167 30 15 chr15 6757255 6757321 -78938433 - MER58B DNA MER1_type -4 337 271 487 242 12 55 chr15 6759599 6759851 -78935903 + L1MEc LINE L1 2063 2260 -3955 2261 81 3 10 chr15 6759851 6760149 -78935605 - AluSg1 SINE Alu -13 296 1 487 242 12 55 chr15 6760149 6760180 -78935574 + L1MEc LINE L1 2260 2291 -3924 804 133 23 0 chr15 6760180 6760308 -78935446 + AluJb SINE Alu 1 131 -181 267 119 68 8 chr15 6811147 6811265 -78884489 + (TG)n Simple_repeat Simple_repeat 2 126 0 245 143 68 15 chr15 6811279 6811547 -78884207 + (TG)n Simple_repeat Simple_repeat 1 282 0 321 114 60 20 chr15 6811583 6811732 -78884022 + (TG)n Simple_repeat Simple_repeat 1 155 0 1713 155 17 24 chr15 6811914 6812204 -78883550 - AluJb SINE Alu -17 295 8 409 113 141 0 chr15 6812351 6812422 -78883332 - AluJ/FRAM SINE Alu -16 296 216 2042 85 0 0 chr15 6812687 6812934 -78882820 - AluSg SINE Alu -63 247 1 1875 89 0 102 chr15 6816170 6816484 -78879270 - AluSg SINE Alu -28 282 1 2305 74 0 3 chr15 6816665 6816986 -78878768 - AluY SINE Alu 0 320 1 1271 122 5 0 chr15 6816986 6817175 -78878579 + Charlie3 DNA MER1_type 2513 2702 -8 1232 146 5 0 chr15 6817177 6817397 -78878357 - L1MB3 LINE L1 -259 5924 5704 2084 130 0 3 chr15 6817472 6817757 -78877997 - AluSx SINE Alu -28 284 1 3421 203 44 18 chr15 6817757 6818716 -78877038 - L1MB3 LINE L1 -724 5460 4475 2440 86 0 0 chr15 6818967 6819270 -78876484 + AluY SINE Alu 1 303 -8 357 82 0 0 chr15 6822417 6822466 -78873288 + (TG)n Simple_repeat Simple_repeat 1 49 0 6360 17 1 0 chr15 6822798 6823511 -78872243 + L1PA3 LINE L1 5442 6155 0 278 269 64 8 chr15 6825179 6825286 -78870468 - MIR3 SINE MIR -38 170 59 1673 167 7 24 chr15 6825332 6825626 -78870128 - AluJo SINE Alu -23 289 1 2114 190 28 2 chr15 6826458 6826894 -78868860 - L1MB3 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 6826897 6827194 -78868560 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 6827205 6827252 -78868502 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 6827349 6827385 -78868369 + GC_rich Low_complexity Low_complexity 1 36 0 1438 85 15 5 chr15 6828261 6828460 -78867294 + AluSq SINE Alu 1 201 -112 2018 189 13 30 chr15 6828826 6829223 -78866531 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 6830113 6830253 -78865501 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 6830896 6831001 -78864753 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 6831555 6831848 -78863906 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 6831924 6832748 -78863006 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 6832966 6833104 -78862650 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 6832991 6833123 -78862631 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 6833133 6833309 -78862445 + MER58A DNA MER1_type 45 224 0 10792 103 52 17 chr15 6834121 6834329 -78861425 - L1PBa LINE L1 -3752 3110 2911 1802 150 44 7 chr15 6834329 6834622 -78861132 - AluSx SINE Alu -8 304 1 10792 103 52 17 chr15 6834622 6834633 -78861121 - L1PBa LINE L1 -3951 2911 2902 2209 66 27 40 chr15 6834633 6834934 -78860820 - AluY SINE Alu -14 297 1 10792 103 52 17 chr15 6834934 6836977 -78858777 - L1PBa LINE L1 -3960 2902 634 1114 155 26 0 chr15 6836977 6837170 -78858584 - L1PBa LINE L1 -6663 200 3 2046 114 4 0 chr15 6838756 6839028 -78856726 + AluSg SINE Alu 30 302 -8 1056 187 60 60 chr15 6839436 6839719 -78856035 - L1MD2 LINE L1 -2 6357 6075 9747 205 34 13 chr15 6839735 6842079 -78853675 + L1MA9 LINE L1 3011 5403 -743 2400 230 20 52 chr15 6842090 6842762 -78852992 + L1MA9 LINE L1 5543 6190 -122 474 65 0 0 chr15 6842762 6842824 -78852930 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 6842824 6842907 -78852847 + L1MA9 LINE L1 6190 6274 -38 22 0 0 0 chr15 6842910 6842932 -78852822 + AT_rich Low_complexity Low_complexity 1 22 0 982 9 0 0 chr15 6844493 6844600 -78851154 + U6 snRNA snRNA 1 107 0 3832 27 0 0 chr15 6844600 6845038 -78850716 + L1PA3 LINE L1 5711 6148 -7 827 90 0 0 chr15 6845547 6845647 -78850107 + AluSq/x SINE Alu 17 116 -197 801 144 8 0 chr15 6845647 6845772 -78849982 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 6845772 6845959 -78849795 + AluSx SINE Alu 121 308 -4 252 299 41 0 chr15 6846057 6846154 -78849600 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 6847130 6847445 -78848309 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 6847730 6847956 -78847798 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 6848047 6848197 -78847557 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 6848197 6848329 -78847425 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 6848329 6848553 -78847201 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 6848553 6848577 -78847177 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 6848578 6848841 -78846913 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 6848841 6848987 -78846767 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 6849459 6849617 -78846137 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 6849710 6849740 -78846014 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 6850504 6850532 -78845222 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 6851913 6852207 -78843547 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 6852838 6852883 -78842871 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 6853188 6853321 -78842433 - FLAM_C SINE Alu -1 132 2 309 263 130 47 chr15 6853642 6853855 -78841899 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 6853855 6854133 -78841621 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 6855095 6855343 -78840411 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 6855426 6855478 -78840276 - L1MB4 LINE L1 -12 6168 6117 1770 95 0 9 chr15 6855478 6855709 -78840045 + AluY SINE Alu 68 296 -15 280 261 23 23 chr15 6857117 6857205 -78838549 + MER5C DNA MER1_type 37 124 -200 1424 130 189 53 chr15 6857667 6857911 -78837843 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 6857911 6857934 -78837820 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2127 111 3 7 chr15 6857938 6858226 -78837528 - AluSp SINE Alu -26 287 1 1424 130 189 53 chr15 6858226 6858298 -78837456 + MER47A DNA MER2_type 212 366 0 2263 73 38 0 chr15 6859098 6859387 -78836367 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 6859391 6859446 -78836308 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 6859972 6860028 -78835726 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 6860305 6860333 -78835421 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 6860590 6860635 -78835119 + AT_rich Low_complexity Low_complexity 1 45 0 1399 160 12 78 chr15 6862074 6862288 -78833466 - AluJo SINE Alu -2 310 124 1864 114 28 41 chr15 6862288 6862578 -78833176 + AluSp SINE Alu 2 287 -26 1399 160 12 78 chr15 6862578 6862695 -78833059 - AluJo SINE Alu -188 124 1 1760 135 14 17 chr15 6862729 6863026 -78832728 + AluSp SINE Alu 5 300 -13 550 196 9 0 chr15 6863026 6863138 -78832616 - AluJb SINE Alu -198 114 2 1697 139 23 16 chr15 6863173 6863476 -78832278 + AluSp SINE Alu 5 309 -4 284 136 0 0 chr15 6863476 6863520 -78832234 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 6863511 6863950 -78831804 + MLT1D LTR MaLR 44 505 0 1767 194 28 33 chr15 6864489 6864885 -78830869 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 6864885 6864932 -78830822 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 6864932 6865075 -78830679 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 6865558 6865866 -78829888 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 6868897 6868930 -78826824 + AT_rich Low_complexity Low_complexity 1 33 0 517 204 138 13 chr15 6868973 6869125 -78826629 - MIR SINE MIR -64 198 28 2038 109 13 33 chr15 6869278 6869581 -78826173 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 6870745 6870786 -78824968 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 204 0 0 chr15 6870798 6870847 -78824907 + MIR SINE MIR 184 232 -30 933 249 127 33 chr15 6870877 6871391 -78824363 - HAL1 LINE L1 -877 1630 1069 592 236 126 95 chr15 6871392 6871867 -78823887 - MLT1H1 LTR MaLR 0 555 66 242 239 127 25 chr15 6871934 6872131 -78823623 - HAL1 LINE L1 -1437 1070 854 2264 112 3 3 chr15 6872158 6872461 -78823293 - AluSp SINE Alu -10 303 1 1876 138 10 31 chr15 6872525 6872853 -78822901 + AluJo SINE Alu 1 322 0 346 286 93 65 chr15 6873127 6873417 -78822337 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 6873800 6874017 -78821737 + MER20 DNA MER1_type 1 219 0 2413 63 0 20 chr15 6874147 6874448 -78821306 + AluY SINE Alu 5 299 -12 270 0 0 0 chr15 6874886 6874916 -78820838 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 6874916 6875195 -78820559 - AluY SINE Alu -27 284 1 388 251 99 41 chr15 6877853 6877876 -78817878 + MIR SINE MIR 12 32 -230 2215 99 7 3 chr15 6877876 6878169 -78817585 + AluY SINE Alu 1 294 -17 388 251 99 41 chr15 6878169 6878316 -78817438 + MIR SINE MIR 32 192 -70 271 343 131 0 chr15 6879246 6879383 -78816371 + MIR3 SINE MIR 31 185 -23 323 233 78 26 chr15 6879402 6879518 -78816236 + L2 LINE L2 3146 3267 -5 236 173 58 0 chr15 6880854 6880906 -78814848 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 6880909 6880945 -78814809 + (TG)n Simple_repeat Simple_repeat 2 37 0 482 255 160 25 chr15 6881141 6881341 -78814413 + MIR SINE MIR 26 252 -10 1916 145 0 26 chr15 6883423 6883726 -78812028 + AluSx SINE Alu 3 297 -15 252 238 197 8 chr15 6883743 6883865 -78811889 + MIR SINE MIR 48 192 -70 897 175 0 18 chr15 6884572 6884738 -78811016 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 6885863 6885898 -78809856 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 293 215 21 21 chr15 6887978 6888071 -78807683 + L1M4c LINE L1 1132 1224 -5160 * 1773 234 64 32 chr15 6888070 6889187 -78806567 + L1M4c LINE L1 1540 2782 -3600 1035 266 109 39 chr15 6889187 6889606 -78806148 - MLT1C LTR MaLR 0 467 2 2171 133 3 46 chr15 6889870 6890238 -78805516 + MSTA LTR MaLR 1 352 -76 2688 146 37 2 chr15 6890338 6890769 -78804985 - MER7C DNA MER2_type -156 446 1 1136 284 61 50 chr15 6890787 6891245 -78804509 - MER21B LTR ERV1 -396 467 5 360 241 288 4 chr15 6891253 6891489 -78804265 - HAL1 LINE L1 -695 1812 1510 390 213 16 39 chr15 6891590 6891717 -78804037 + CT-rich Low_complexity Low_complexity 3 126 0 703 254 130 52 chr15 6891726 6891856 -78803898 - HAL1 LINE L1 -1542 965 846 337 39 19 19 chr15 6891856 6891908 -78803846 + (TG)n Simple_repeat Simple_repeat 1 52 0 703 254 130 52 chr15 6891908 6892139 -78803615 - HAL1 LINE L1 -1661 846 576 2938 228 52 47 chr15 6892355 6893161 -78802593 + L1M4 LINE L1 5 814 -5728 333 220 11 33 chr15 6893161 6893252 -78802502 + L1M4 LINE L1 737 825 -5717 295 218 23 11 chr15 6893227 6893314 -78802440 + L1M4 LINE L1 727 814 -5728 * 296 164 16 0 chr15 6893312 6893373 -78802381 + L1M4 LINE L1 735 796 -5746 3116 249 64 45 chr15 6893379 6893670 -78802084 + L1M4 LINE L1 727 1011 -5814 2356 88 0 3 chr15 6893670 6893965 -78801789 - AluSc SINE Alu -15 294 1 3116 249 64 45 chr15 6893965 6895417 -78800337 + L1M4 LINE L1 1011 2647 -4178 1472 213 11 0 chr15 6895417 6895690 -78800064 + AluJo SINE Alu 3 278 -34 3116 249 64 45 chr15 6895690 6895952 -78799802 + L1M4 LINE L1 2647 2903 -3922 1226 105 0 0 chr15 6895968 6896130 -78799624 + AluSg/x SINE Alu 143 304 -8 848 227 35 11 chr15 6896131 6896394 -78799360 + L1M4 LINE L1 2871 3135 -3509 469 151 140 26 chr15 6896535 6896711 -78799043 + L1M4 LINE L1 5177 5370 -808 1705 193 0 3 chr15 6896750 6897061 -78798693 + AluJo SINE Alu 1 310 -2 235 218 18 0 chr15 6897063 6897118 -78798636 + L1MB7 LINE L1 6108 6163 -21 22 0 0 0 chr15 6897327 6897349 -78798405 + AT_rich Low_complexity Low_complexity 1 22 0 593 228 54 58 chr15 6897461 6897595 -78798159 - L1ME1 LINE L1 -5 6397 6263 180 0 0 0 chr15 6897595 6897615 -78798139 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 593 228 54 58 chr15 6897615 6897704 -78798050 - L1ME1 LINE L1 -139 6263 6175 * 2185 249 80 26 chr15 6897699 6898061 -78797693 - L1ME1 LINE L1 -816 5566 5225 2585 74 0 3 chr15 6898061 6898373 -78797381 - AluY SINE Alu 0 311 1 2185 249 80 26 chr15 6898373 6898881 -78796873 - L1ME1 LINE L1 -1157 5225 4649 2294 144 76 13 chr15 6898883 6899280 -78796474 + MSTB LTR MaLR 3 424 -2 9541 176 11 18 chr15 6899282 6900943 -78794811 + MSTB-int LTR MaLR 3 1651 0 2401 180 65 0 chr15 6900943 6901343 -78794411 + MSTB LTR MaLR 1 426 0 202 239 15 30 chr15 6901348 6901415 -78794339 + CT-rich Low_complexity Low_complexity 4 69 0 180 111 0 0 chr15 6901423 6901450 -78794304 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1013 212 14 29 chr15 6901462 6901740 -78794014 - L1ME1 LINE L1 -1755 4627 4354 474 320 32 20 chr15 6902269 6902516 -78793238 - L1M4 LINE L1 -6269 273 24 345 239 122 22 chr15 6902555 6902735 -78793019 + L1MEc LINE L1 1774 1971 -4425 22 35 0 0 chr15 6902783 6902812 -78792942 + AT_rich Low_complexity Low_complexity 1 29 0 372 130 0 0 chr15 6903172 6903241 -78792513 + (TC)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr15 6903242 6903271 -78792483 + (TA)n Simple_repeat Simple_repeat 1 29 0 241 185 62 0 chr15 6903273 6903354 -78792400 - L1ME1 LINE L1 -5504 880 795 271 243 48 0 chr15 6903357 6903460 -78792294 + (TA)n Simple_repeat Simple_repeat 1 108 0 1033 252 82 18 chr15 6903461 6903790 -78791964 - MLT2D LTR ERVL -64 350 1 6110 168 45 37 chr15 6903792 6904018 -78791736 - ERVL-D LTR ERVL -11 5753 5530 2457 80 0 0 chr15 6904018 6904317 -78791437 + AluY SINE Alu 1 299 -12 6110 168 45 37 chr15 6904317 6904434 -78791320 - ERVL-D LTR ERVL -234 5530 5415 2281 125 0 0 chr15 6904434 6904746 -78791008 + AluSx SINE Alu 1 312 0 6110 168 45 37 chr15 6904746 6905570 -78790184 - ERVL-D LTR ERVL -349 5415 4576 4469 262 51 31 chr15 6905678 6905899 -78789855 - L1MEc LINE L1 -2033 4096 3881 2055 100 25 4 chr15 6905899 6906218 -78789536 - AluSq SINE Alu 0 325 1 4469 262 51 31 chr15 6906218 6907871 -78787883 - L1MEc LINE L1 -2248 3881 2183 6347 159 20 24 chr15 6907876 6908883 -78786871 - L1MC1 LINE L1 -1 6592 5590 2476 153 40 26 chr15 6908883 6909309 -78786445 - MSTB1 LTR MaLR 0 432 1 6347 159 20 24 chr15 6909309 6909745 -78786009 - L1MC1 LINE L1 -1003 5590 5154 13387 123 30 11 chr15 6909795 6912570 -78783184 + L1PA10 LINE L1 3373 6163 -5 3616 196 94 43 chr15 6912591 6913720 -78782034 - L1MC1 LINE L1 -3971 2435 1251 301 304 155 26 chr15 6913929 6914123 -78781631 - L1ME LINE L1 -284 5837 5619 1241 144 0 6 chr15 6914123 6914304 -78781450 + AluSx SINE Alu 1 180 -132 2028 196 41 21 chr15 6914364 6914752 -78781002 + MSTD LTR MaLR 1 396 0 2172 115 14 0 chr15 6916104 6916399 -78779355 - AluSq SINE Alu -14 299 1 399 120 22 76 chr15 6916689 6916781 -78778973 + HsTC2 DNA Tc2 1 87 -1811 276 287 66 55 chr15 6917000 6917272 -78778482 - L1MEc LINE L1 -4706 1604 1330 31 26 0 0 chr15 6917275 6917313 -78778441 + AT_rich Low_complexity Low_complexity 1 38 0 2457 73 3 0 chr15 6917358 6917660 -78778094 + AluY SINE Alu 1 303 -8 10263 204 70 18 chr15 6917702 6918414 -78777340 - L1MC3 LINE L1 -39 8164 7490 180 77 0 0 chr15 6918414 6918440 -78777314 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 10263 204 70 18 chr15 6918440 6920364 -78775390 - L1MC3 LINE L1 -713 7490 5396 3342 228 54 81 chr15 6920388 6921983 -78773771 - L1MC3 LINE L1 -4850 1195 1 902 296 103 77 chr15 6922039 6923250 -78772504 - L1MEc LINE L1 -4872 1247 5 28 29 0 0 chr15 6923732 6923767 -78771987 + AT_rich Low_complexity Low_complexity 1 35 0 317 310 16 64 chr15 6925902 6925920 -78769834 - MIR SINE MIR -26 236 219 2323 84 40 0 chr15 6925920 6926218 -78769536 - AluY SINE Alu -1 310 1 317 310 16 64 chr15 6926218 6926386 -78769368 - MIR SINE MIR -43 219 59 1763 231 45 27 chr15 6926543 6927057 -78768697 - Charlie1b DNA MER1_type 0 523 1 378 221 31 24 chr15 6927542 6927669 -78768085 - L1M4 LINE L1 -777 5369 5242 1453 194 65 26 chr15 6928572 6928923 -78766831 + MLT1A1 LTR MaLR 1 365 0 342 0 0 0 chr15 6930143 6930181 -78765573 + (CA)n Simple_repeat Simple_repeat 2 39 0 2099 225 124 37 chr15 6933053 6933393 -78762361 - Charlie2 DNA MER1_type -33 2829 2520 1978 121 0 28 chr15 6933393 6933718 -78762036 - AluSx SINE Alu 0 317 1 2099 225 124 37 chr15 6933718 6934265 -78761489 - Charlie2 DNA MER1_type -342 2520 1864 732 69 0 0 chr15 6934484 6934571 -78761183 + AluSc SINE Alu 83 169 -140 910 235 118 42 chr15 6935511 6935800 -78759954 - MER21B LTR ERV1 -62 801 491 68 42 0 0 chr15 6935800 6935896 -78759858 + AT_rich Low_complexity Low_complexity 1 96 0 382 146 126 215 chr15 6936152 6936399 -78759355 - MER21B LTR ERV1 -627 236 12 230 328 0 0 chr15 6936439 6936497 -78759257 + C-rich Low_complexity Low_complexity 4 61 0 181 264 56 56 chr15 6937241 6937313 -78758441 - MIR SINE MIR -70 138 67 1841 214 16 3 chr15 6938183 6938566 -78757188 - MLT1B LTR MaLR 0 390 3 806 183 154 6 chr15 6938937 6938969 -78756785 + AluJo SINE Alu 86 112 -200 192 77 0 0 chr15 6938969 6938995 -78756759 + (CAA)n Simple_repeat Simple_repeat 2 27 0 806 183 154 6 chr15 6938995 6939137 -78756617 + AluJo SINE Alu 112 286 -26 591 173 0 0 chr15 6939137 6939247 -78756507 + (TA)n Simple_repeat Simple_repeat 1 110 0 367 276 136 67 chr15 6939831 6940309 -78755445 - MLT1H1 LTR MaLR -8 547 37 1018 258 63 3 chr15 6942171 6942473 -78753281 - LTR16C LTR ERVL -22 469 150 2591 148 35 0 chr15 6943069 6943475 -78752279 + MSTC LTR MaLR 9 428 0 253 290 10 40 chr15 6943762 6943862 -78751892 - L2 LINE L2 -1 3271 3175 628 244 45 29 chr15 6944162 6944519 -78751235 + LTR37A LTR ERV1 26 424 -2 182 287 16 57 chr15 6944521 6944643 -78751111 - L2 LINE L2 -379 2934 2818 22 0 0 0 chr15 6944746 6944768 -78750986 + AT_rich Low_complexity Low_complexity 1 22 0 233 192 0 0 chr15 6945258 6945310 -78750444 - MIR SINE MIR -134 128 77 261 0 0 0 chr15 6945535 6945564 -78750190 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 413 263 0 0 chr15 6946767 6946862 -78748892 - MER94 DNA DNA -1 133 39 311 300 9 9 chr15 6947748 6947858 -78747896 - L1M4 LINE L1 -1160 4986 4877 25 0 0 0 chr15 6948078 6948103 -78747651 + AT_rich Low_complexity Low_complexity 1 25 0 27311 103 14 10 chr15 6949063 6953005 -78742749 - L1P LINE L1 -2180 3966 11 406 272 38 46 chr15 6953016 6953255 -78742499 + L1M4 LINE L1 3725 3961 -2185 429 276 31 69 chr15 6953737 6953998 -78741756 + L1M4 LINE L1 4578 4828 -1318 1392 153 25 8 chr15 6954131 6954366 -78741388 + L1PA16 LINE L1 5919 6157 -9 876 153 7 0 chr15 6954374 6954549 -78741205 + FRAM SINE Alu 10 185 0 30 27 0 0 chr15 6956970 6957007 -78738747 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 3 23 chr15 6957008 6957313 -78738441 - AluJo SINE Alu -11 301 3 245 320 0 13 chr15 6957937 6958012 -78737742 + CT-rich Low_complexity Low_complexity 4 77 0 1643 202 85 50 chr15 6959031 6959120 -78736634 - MER74A LTR ERVL -24 534 450 2220 100 3 3 chr15 6959120 6959409 -78736345 + AluSg SINE Alu 1 289 -21 1643 202 85 50 chr15 6959409 6959835 -78735919 - MER74A LTR ERVL -108 450 1 2367 90 0 7 chr15 6960096 6960396 -78735358 + AluY SINE Alu 1 298 -13 349 326 54 44 chr15 6961980 6962367 -78733387 + L1M4 LINE L1 2133 2523 -3623 1346 201 13 42 chr15 6962629 6962938 -78732816 + MLT1A1 LTR MaLR 1 300 -65 184 338 25 12 chr15 6963650 6963730 -78732024 - MER5A DNA MER1_type -39 150 70 7113 242 78 35 chr15 6964692 6968471 -78727283 - L1MD2 LINE L1 -29 6724 2685 185 0 40 0 chr15 6968478 6968503 -78727251 + (TA)n Simple_repeat Simple_repeat 2 27 0 1616 213 76 52 chr15 6968503 6970415 -78725339 - L1MD2 LINE L1 -4073 2467 59 841 206 44 40 chr15 6970419 6970728 -78725026 - MLT1A2 LTR MaLR -4 405 97 399 286 101 68 chr15 6971461 6971828 -78723926 + L1MEd LINE L1 292 670 -5449 2191 121 3 0 chr15 6972095 6972402 -78723352 - AluSx SINE Alu -4 308 1 392 291 127 28 chr15 6972677 6972890 -78722864 + L1MEd LINE L1 849 1082 -5037 333 252 211 0 chr15 6972901 6973024 -78722730 - MIR SINE MIR 0 262 114 762 241 91 44 chr15 6973184 6973591 -78722163 - LTR37A LTR ERV1 0 426 1 452 294 53 50 chr15 6973605 6974033 -78721721 + L1MEd LINE L1 1213 1690 -800 2330 86 0 23 chr15 6974156 6974458 -78721296 + AluSx SINE Alu 5 299 -13 2687 26 3 3 chr15 6974694 6975005 -78720749 + AluYa5 SINE Alu 1 311 0 300 242 135 68 chr15 6975161 6975546 -78720208 + L1MEd LINE L1 2194 2604 -3525 200 114 29 0 chr15 6975669 6975704 -78720050 + (TG)n Simple_repeat Simple_repeat 1 36 0 629 167 19 0 chr15 6975784 6975892 -78719862 + L1MC/D LINE L1 5599 5708 -625 519 264 121 19 chr15 6975966 6976281 -78719473 + L1MEd LINE L1 3053 3399 -2730 6342 143 21 21 chr15 6976308 6976670 -78719084 - L1MC1 LINE L1 -5 6328 5968 373 22 0 0 chr15 6976670 6976715 -78719039 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 2280 89 0 0 chr15 6976715 6976997 -78718757 - AluSx SINE Alu -1 326 1 6342 143 21 21 chr15 6976997 6977800 -78717954 - L1MC1 LINE L1 -364 5969 5161 10542 50 6 1 chr15 6977869 6979971 -78715783 - L1PA6 LINE L1 -4 6150 4047 419 179 11 42 chr15 6980107 6980202 -78715552 + MLT1A2 LTR MaLR 14 105 -269 822 237 17 23 chr15 6980210 6980383 -78715371 + MER21B LTR ERV1 12 183 -680 959 222 84 25 chr15 6980704 6980983 -78714771 - L1MB8 LINE L1 0 6178 5884 243 0 0 0 chr15 6981469 6981496 -78714258 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1387 182 28 21 chr15 6981500 6981791 -78713963 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 6981925 6981951 -78713803 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 6982873 6982895 -78712859 + AT_rich Low_complexity Low_complexity 1 22 0 411 264 91 8 chr15 6983825 6983946 -78711808 - MIR3 SINE MIR -40 168 38 1832 164 12 84 chr15 6985389 6985803 -78709951 - MLT1B LTR MaLR -4 386 3 945 199 49 29 chr15 6986156 6986402 -78709352 - MLT1A1 LTR MaLR -16 349 99 3147 211 81 39 chr15 6986443 6987210 -78708544 - MER21B LTR ERV1 -53 810 12 419 179 11 42 chr15 6987218 6987313 -78708441 - MLT1A1 LTR MaLR -269 105 14 2127 109 0 13 chr15 6988171 6988473 -78707281 - AluSg SINE Alu -12 298 1 1003 147 0 40 chr15 6989493 6989670 -78706084 + FRAM SINE Alu 1 40 0 319 309 0 0 chr15 6990882 6990966 -78704788 + MIR3 SINE MIR 73 156 -52 479 230 111 15 chr15 6991583 6991718 -78704036 + MER58A DNA MER1_type 1 148 0 225 94 62 0 chr15 6991718 6991750 -78704004 + MER58A DNA MER1_type 191 224 0 887 263 55 15 chr15 6991822 6992285 -78703469 - MER119 DNA MER1_type -1 582 5 209 200 98 14 chr15 6992302 6992371 -78703383 - MIR SINE MIR -69 139 74 204 40 0 0 chr15 6993680 6993705 -78702049 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1445 88 0 16 chr15 6994499 6994693 -78701061 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 6994963 6994998 -78700756 + (TG)n Simple_repeat Simple_repeat 1 36 0 862 301 68 37 chr15 6995549 6996141 -78699613 - L1MC4a LINE L1 -1915 6153 5544 465 332 93 18 chr15 6996734 6996960 -78698794 - L1MC4a LINE L1 -1604 4802 4560 275 317 106 22 chr15 6997003 6997363 -78698391 - L1MC4a LINE L1 -1949 4457 4068 22 0 0 0 chr15 6997660 6997682 -78698072 + AT_rich Low_complexity Low_complexity 1 22 0 312 136 34 0 chr15 6998669 6998728 -78697026 - L1MC4a LINE L1 -2980 3426 3366 1368 171 95 29 chr15 6998745 6998937 -78696817 - L1MB3 LINE L1 -1 6182 5959 2037 131 0 3 chr15 6998937 6999243 -78696511 - AluSx SINE Alu -7 305 1 1368 171 95 29 chr15 6999243 6999366 -78696388 - L1MB3 LINE L1 -224 5959 5846 2001 99 16 59 chr15 6999370 6999693 -78696061 - AluSx SINE Alu -3 309 1 548 333 45 31 chr15 6999707 6999927 -78695827 - L1MC4a LINE L1 -3044 3362 3134 633 125 0 29 chr15 6999927 7000031 -78695723 - HY3 scRNA scRNA 0 101 1 548 333 45 31 chr15 7000031 7000167 -78695587 - L1MC4a LINE L1 -3272 3134 3001 2367 223 149 19 chr15 7000437 7001148 -78694606 - MER21B LTR ERV1 -31 832 40 439 205 13 0 chr15 7001187 7001265 -78694489 - MER21B LTR ERV1 -773 90 12 2163 99 0 0 chr15 7003656 7003949 -78691805 - AluSx SINE Alu -13 299 7 1759 168 36 0 chr15 7003954 7004263 -78691491 + MER44D DNA MER2_type 18 607 -2 2090 156 33 0 chr15 7005075 7005441 -78690313 + MLT1B LTR MaLR 2 379 -11 241 270 101 11 chr15 7005642 7005731 -78690023 - MIR SINE MIR -72 136 40 1076 121 0 0 chr15 7005947 7006104 -78689650 - AluSp SINE Alu -17 296 140 2106 117 0 0 chr15 7006836 7007136 -78688618 + AluSx SINE Alu 1 300 -12 45122 33 4 5 chr15 7008109 7014270 -78681484 + L1PA3 LINE L1 7 6155 0 1620 226 41 13 chr15 7014345 7014810 -78680944 - L1MC4a LINE L1 -5264 1145 668 666 260 166 6 chr15 7014906 7015244 -78680510 - L1MC4a LINE L1 -6009 400 9 2074 205 32 42 chr15 7015732 7015881 -78679873 + MER90 LTR ERV1 6 155 -459 2397 75 0 3 chr15 7015881 7016188 -78679566 + AluY SINE Alu 1 306 -5 2074 205 32 42 chr15 7016188 7016608 -78679146 + MER90 LTR ERV1 155 610 -4 1931 112 49 3 chr15 7017372 7017658 -78678096 - AluSx SINE Alu -13 299 1 230 145 72 58 chr15 7018006 7018075 -78677679 + MER53 DNA DNA 119 188 -1 1662 213 81 29 chr15 7019352 7019832 -78675922 - MLT1D LTR MaLR 0 505 1 203 317 79 67 chr15 7020014 7020178 -78675576 - MIR SINE MIR -6 256 91 184 263 0 92 chr15 7020438 7020514 -78675240 - L3 LINE CR1 -2 1575 1507 * 385 229 35 83 chr15 7020496 7020610 -78675144 - MER5A DNA MER1_type -6 183 75 1675 139 40 7 chr15 7020610 7020926 -78674828 - AluY SINE Alu 0 326 2 385 229 35 83 chr15 7020926 7020954 -78674800 - MER5A DNA MER1_type -114 75 47 1752 118 129 26 chr15 7020997 7021337 -78674417 - THE1C LTR MaLR 0 375 1 1952 88 25 63 chr15 7023098 7023417 -78672337 + AluY SINE Alu 1 307 -4 313 265 131 29 chr15 7024317 7024562 -78671192 + L1MC4a LINE L1 970 1239 -4880 324 233 159 80 chr15 7024661 7024975 -78670779 + L1MC4a LINE L1 2887 3225 -2904 304 271 75 81 chr15 7025041 7025373 -78670381 + L1MC4a LINE L1 3609 3938 -2191 351 253 153 35 chr15 7025645 7025815 -78669939 + L1MC4a LINE L1 4221 4410 -1719 347 252 69 23 chr15 7025939 7026070 -78669684 - MLT1J1 LTR MaLR -167 279 143 1058 262 78 31 chr15 7026119 7026543 -78669211 - MLT1J1 LTR MaLR -2 444 1 348 338 45 7 chr15 7026543 7026697 -78669057 + L1MC4a LINE L1 4406 4565 -1564 7664 36 0 4 chr15 7026705 7027912 -78667842 + L1PA4 LINE L1 4951 6154 -1 748 211 79 152 chr15 7028003 7028228 -78667526 - MLT1A1 LTR MaLR 0 365 180 2189 138 76 15 chr15 7028228 7028569 -78667185 - THE1B LTR MaLR -2 362 1 748 211 79 152 chr15 7028569 7028737 -78667017 - MLT1A1 LTR MaLR -185 180 1 2307 173 38 26 chr15 7028794 7029221 -78666533 - MSTB1 LTR MaLR 0 432 1 1780 170 22 41 chr15 7029329 7029694 -78666060 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 7029702 7029737 -78666017 + AT_rich Low_complexity Low_complexity 1 35 0 763 326 110 12 chr15 7030204 7030775 -78664979 + L1MC4a LINE L1 5239 5865 -1926 307 264 8 72 chr15 7030953 7031078 -78664676 - MLT1H LTR MaLR -238 311 195 271 308 54 32 chr15 7032072 7032257 -78663497 + ERVL LTR ERVL 514 702 -5062 781 334 46 13 chr15 7032737 7033146 -78662608 + ERVL LTR ERVL 2644 3111 -2638 2138 114 0 0 chr15 7033175 7033503 -78662251 + AluSg SINE Alu 1 328 0 1200 283 114 27 chr15 7033518 7034388 -78661366 + ERVL LTR ERVL 3229 4216 -1548 486 351 101 4 chr15 7034560 7034808 -78660946 + ERVL LTR ERVL 4769 5040 -724 1683 225 46 38 chr15 7034939 7035112 -78660642 + MLT1C LTR MaLR 3 173 -294 2416 71 7 0 chr15 7035112 7035409 -78660345 + AluY SINE Alu 1 299 -12 1683 225 46 38 chr15 7035409 7035688 -78660066 + MLT1C LTR MaLR 173 459 -8 411 266 0 9 chr15 7035692 7035801 -78659953 + ERVL LTR ERVL 5172 5279 -485 5900 132 20 28 chr15 7035923 7035945 -78659809 + MER49 LTR ERV1 1 22 -901 1843 136 0 74 chr15 7035945 7036268 -78659486 + AluSx SINE Alu 1 299 -13 5900 132 20 28 chr15 7036268 7037175 -78658579 + MER49 LTR ERV1 22 923 0 576 191 18 12 chr15 7038135 7038303 -78657451 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2275 115 3 0 chr15 7039606 7039911 -78655843 - AluSq SINE Alu -5 308 3 2262 104 0 7 chr15 7039922 7040230 -78655524 - AluY SINE Alu -5 306 1 21955 195 46 6 chr15 7041526 7045695 -78650059 - ERVL LTR ERVL -788 4976 550 3304 252 53 26 chr15 7045833 7047076 -78648678 + L1MC2 LINE L1 2626 3902 -2244 2000 143 181 8 chr15 7047076 7047441 -78648313 + MSTA LTR MaLR 1 428 0 9905 132 12 85 chr15 7047443 7049145 -78646609 + MSTA-int LTR MaLR 3 1580 0 403 113 238 0 chr15 7049145 7049225 -78646529 + MSTA LTR MaLR 1 99 -329 985 145 134 0 chr15 7049227 7049406 -78646348 + MSTA LTR MaLR 226 428 0 1294 253 6 10 chr15 7049406 7049718 -78646036 + L1MC2 LINE L1 3898 4208 -1938 1402 247 118 34 chr15 7049721 7049838 -78645916 - MLT1D LTR MaLR 0 505 399 2356 151 28 13 chr15 7049838 7050228 -78645526 + MSTD LTR MaLR 1 396 0 1402 247 118 34 chr15 7050228 7050576 -78645178 - MLT1D LTR MaLR -106 399 1 865 263 23 7 chr15 7050580 7050880 -78644874 + L1MC2 LINE L1 4211 4515 -1631 1043 327 86 22 chr15 7050895 7051587 -78644167 + L1MA9 LINE L1 106 770 -5185 423 245 71 71 chr15 7051652 7051807 -78643947 + L1MA9 LINE L1 635 789 -5166 11728 197 21 28 chr15 7051808 7054122 -78641632 + L1MA9 LINE L1 2544 4851 -1349 2176 99 0 38 chr15 7054122 7054436 -78641318 + AluSp SINE Alu 1 302 -11 11728 197 21 28 chr15 7054436 7055262 -78640492 + L1MA9 LINE L1 4851 5681 -519 306 160 20 120 chr15 7055288 7055388 -78640366 - L1MC4 LINE L1 -1339 6703 6614 301 233 35 23 chr15 7055325 7055411 -78640343 + L1MC4 LINE L1 6615 6701 -1341 * 2759 163 27 17 chr15 7055428 7055951 -78639803 + L1MA9 LINE L1 5673 6200 0 2951 206 73 10 chr15 7055955 7056946 -78638808 + L1MC2 LINE L1 4980 6034 -310 2795 98 40 10 chr15 7056947 7057347 -78638407 - L1MA2 LINE L1 0 6304 5893 796 171 76 0 chr15 7057382 7057540 -78638214 + L1MC3 LINE L1 7118 7287 -498 1453 213 53 36 chr15 7057543 7057767 -78637987 + L1MC3 LINE L1 7364 7600 -185 2397 75 3 0 chr15 7057767 7058061 -78637693 + AluSp SINE Alu 1 295 -18 1453 213 53 36 chr15 7058061 7058249 -78637505 + L1MC3 LINE L1 7600 7783 -2 240 244 134 12 chr15 7058295 7058377 -78637377 - LTR67 LTR ERVL -367 190 99 1010 230 8 28 chr15 7058779 7059027 -78636727 - LTR53 LTR ERVL -88 431 189 293 266 25 0 chr15 7060916 7060995 -78634759 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 189 215 25 13 chr15 7061007 7061086 -78634668 + (TA)n Simple_repeat Simple_repeat 2 81 0 2649 29 7 3 chr15 7061123 7061430 -78634324 - AluY SINE Alu -3 308 1 212 359 26 0 chr15 7063486 7063564 -78632190 - L2 LINE L2 -553 2761 2682 2508 198 29 2 chr15 7064235 7064711 -78631043 - L1MB3 LINE L1 -2 6181 5693 397 343 18 24 chr15 7064897 7065066 -78630688 + MIR SINE MIR 88 255 -7 1527 150 108 119 chr15 7065404 7065683 -78630071 + MLT1C LTR MaLR 1 274 -193 2823 148 14 5 chr15 7065683 7066102 -78629652 - MSTB LTR MaLR 0 426 4 1527 150 108 119 chr15 7066102 7066294 -78629460 + MLT1C LTR MaLR 274 467 0 2120 121 3 7 chr15 7067267 7067565 -78628189 - AluSx SINE Alu -13 299 3 2554 44 0 0 chr15 7067911 7068207 -78627547 - AluY SINE Alu -14 297 2 24 32 0 0 chr15 7068442 7068473 -78627281 + AT_rich Low_complexity Low_complexity 1 31 0 7476 143 26 13 chr15 7069090 7070303 -78625451 - Tigger3b DNA MER2_type -3 1228 1 2208 114 13 0 chr15 7070523 7070951 -78624803 + AluSx SINE Alu 1 432 0 1096 47 0 0 chr15 7070986 7071113 -78624641 - L1PA2 LINE L1 -2 6153 6027 2185 78 0 31 chr15 7071397 7071718 -78624036 - AluY SINE Alu 0 311 1 2613 42 0 3 chr15 7072016 7072328 -78623426 - AluY SINE Alu 0 311 1 240 218 26 39 chr15 7072558 7072636 -78623118 + MIR SINE MIR 168 244 -18 618 300 91 72 chr15 7072752 7073513 -78622241 - L1MC4 LINE L1 -136 7906 7132 4521 210 63 38 chr15 7073791 7075372 -78620382 - L1MD2 LINE L1 -14 6345 4741 2601 122 29 67 chr15 7075404 7075854 -78619900 + Tigger2a DNA MER2_type 1 433 -1 1583 181 59 25 chr15 7075861 7076182 -78619572 + MER2 DNA MER2_type 1 332 -13 349 181 194 0 chr15 7076188 7076260 -78619494 + MER21B LTR ERV1 11 96 -767 3110 231 46 10 chr15 7076260 7077159 -78618595 - L1MD2 LINE L1 -2200 3946 3016 1674 251 117 27 chr15 7077132 7078451 -78617303 - L1MEc LINE L1 -2525 3690 1747 * 304 205 111 0 chr15 7078483 7078600 -78617154 - L1MEc LINE L1 -4636 1620 1450 2364 95 3 13 chr15 7078604 7078919 -78616835 - AluSp SINE Alu -1 312 1 1025 145 0 7 chr15 7078921 7079073 -78616681 - FRAM SINE Alu -5 171 21 692 197 8 0 chr15 7079313 7079440 -78616314 - FLAM_C SINE Alu -3 130 3 846 270 48 28 chr15 7079503 7079896 -78615858 - L1MEc LINE L1 -5638 758 358 230 226 10 78 chr15 7079942 7080044 -78615710 - L1MEc LINE L1 -6013 383 289 3017 130 35 0 chr15 7080095 7080604 -78615150 - Tigger1 DNA MER2_type -420 1998 1472 24 32 0 0 chr15 7080991 7081022 -78614732 + AT_rich Low_complexity Low_complexity 1 31 0 1132 257 117 45 chr15 7081933 7082559 -78613195 + HAL1 LINE L1 1813 2483 -24 2109 136 0 13 chr15 7082729 7083045 -78612709 - AluSx SINE Alu 0 312 1 270 0 0 0 chr15 7084596 7084626 -78611128 + (T)n Simple_repeat Simple_repeat 1 30 0 239 238 113 96 chr15 7084937 7085219 -78610535 + L1MC5 LINE L1 6695 6981 -980 1924 141 0 0 chr15 7085298 7085575 -78610179 + AluSx SINE Alu 32 308 -4 619 277 104 6 chr15 7087356 7087709 -78608045 + MER57A LTR ERV1 41 403 0 21 0 0 0 chr15 7087977 7087998 -78607756 + AT_rich Low_complexity Low_complexity 1 21 0 417 299 0 0 chr15 7088303 7088450 -78607304 + L1ME3 LINE L1 5043 5189 -957 2545 62 0 0 chr15 7088568 7088873 -78606881 - AluY SINE Alu -6 305 1 1310 196 103 56 chr15 7088876 7089254 -78606500 + MSTD LTR MaLR 1 396 0 1618 246 53 45 chr15 7089266 7089999 -78605755 + L1ME3 LINE L1 5255 5993 -169 218 321 55 28 chr15 7090742 7090851 -78604903 - L3 LINE CR1 -696 881 770 1839 155 12 75 chr15 7091547 7091827 -78603927 - L1MA4 LINE L1 -4 6296 6051 2350 92 0 0 chr15 7091827 7092122 -78603632 - AluSc SINE Alu -14 295 1 1839 155 12 75 chr15 7092122 7092267 -78603487 - L1MA4 LINE L1 -249 6051 5898 1271 142 11 0 chr15 7092594 7092784 -78602970 + AluSx SINE Alu 1 192 -120 41625 39 5 1 chr15 7092784 7098887 -78596867 + L1PA3 LINE L1 17 6139 -16 888 157 0 0 chr15 7098895 7099029 -78596725 + AluSg/x SINE Alu 162 295 -17 531 282 85 56 chr15 7099270 7099683 -78596071 + L1MD3 LINE L1 790 1187 -5018 907 259 5 0 chr15 7099689 7099901 -78595853 - MER20 DNA MER1_type -6 213 1 2237 110 0 0 chr15 7099995 7100286 -78595468 + AluSg SINE Alu 1 291 -19 497 279 65 30 chr15 7100288 7101228 -78594526 + L1MD3 LINE L1 1258 2264 -4132 5805 185 22 16 chr15 7101716 7102969 -78592785 + L1MC1 LINE L1 24 1284 -5142 2027 141 9 15 chr15 7102969 7103310 -78592444 + MER1B DNA MER1_type 1 339 0 7656 209 42 77 chr15 7103314 7105873 -78589881 + L1MC1 LINE L1 1281 3927 -2686 855 154 0 0 chr15 7105873 7106003 -78589751 + AluSq/x SINE Alu 9 138 -174 7656 209 42 77 chr15 7106003 7108758 -78586996 + L1MC1 LINE L1 3927 6611 -2 4543 233 56 82 chr15 7109069 7111444 -78584310 - L1M4 LINE L1 -1095 5051 2739 408 287 0 0 chr15 7111529 7111679 -78584075 + L1MD3 LINE L1 4288 4437 -1778 2606 234 30 74 chr15 7111733 7112318 -78583436 - L1MDb LINE L1 -4918 1488 879 189 0 0 0 chr15 7112318 7112339 -78583415 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2173 94 4 0 chr15 7112341 7112617 -78583137 - AluSx SINE Alu -26 286 10 2606 234 30 74 chr15 7112617 7113041 -78582713 - L1MDb LINE L1 -5528 878 536 356 245 20 0 chr15 7113027 7113125 -78582629 + L1MD3 LINE L1 5633 5732 -501 * 687 237 46 92 chr15 7113140 7113777 -78581977 + L1MD3 LINE L1 5814 6479 -1375 1461 163 87 24 chr15 7113777 7114066 -78581688 + AluJo SINE Alu 1 307 -5 687 237 46 92 chr15 7114066 7114401 -78581353 + L1MD3 LINE L1 6479 6828 -1026 2773 3 0 0 chr15 7114401 7114699 -78581055 - AluYa5 SINE Alu -13 298 1 687 237 46 92 chr15 7114699 7114952 -78580802 + L1MD3 LINE L1 6828 6839 -1015 2626 63 8 11 chr15 7114952 7115318 -78580436 + L1PA8 LINE L1 5805 6169 -3 687 237 46 92 chr15 7115318 7115620 -78580134 + L1MD3 LINE L1 6839 7153 -701 2928 152 45 7 chr15 7115629 7116187 -78579567 + L1MA8 LINE L1 5708 6286 -5 2471 266 44 15 chr15 7116202 7117989 -78577765 + L1MEc LINE L1 1053 3052 -3374 262 326 86 31 chr15 7117985 7118335 -78577419 + L1MC5 LINE L1 7138 7506 -455 * 1449 135 4 13 chr15 7118450 7118680 -78577074 + AluSg/x SINE Alu 85 312 0 194 362 40 7 chr15 7118830 7118979 -78576775 + L2 LINE L2 1480 1633 -1681 1032 300 71 44 chr15 7118994 7119917 -78575837 + L2 LINE L2 2368 3313 0 207 176 0 0 chr15 7120558 7120592 -78575162 + GA-rich Low_complexity Low_complexity 3 36 0 769 98 22 44 chr15 7120592 7120775 -78574979 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2444 59 10 7 chr15 7121800 7122107 -78573647 - AluY SINE Alu -3 308 1 194 238 38 100 chr15 7123398 7123478 -78572276 - MIR SINE MIR -111 151 77 591 257 11 29 chr15 7123774 7123949 -78571805 + MER5B DNA MER1_type 2 173 -5 287 256 88 40 chr15 7123981 7124106 -78571648 + MER5B DNA MER1_type 17 147 -31 230 98 24 0 chr15 7124224 7124265 -78571489 + MLT1K LTR MaLR 524 565 -23 411 226 11 0 chr15 7124275 7124368 -78571386 - MER81 DNA DNA -5 109 16 2510 66 0 0 chr15 7124498 7124800 -78570954 - AluY SINE Alu -9 302 1 233 328 161 10 chr15 7125611 7125803 -78569951 + MIR SINE MIR 36 256 -6 2034 103 38 14 chr15 7126293 7126583 -78569171 + AluSx SINE Alu 1 297 -15 361 214 0 36 chr15 7126657 7126797 -78568957 + CT-rich Low_complexity Low_complexity 4 138 0 277 322 85 22 chr15 7127082 7127548 -78568206 - L1MC/D LINE L1 -429 5733 5257 311 339 90 44 chr15 7127610 7128065 -78567689 - L1MC/D LINE L1 -989 5157 4682 624 263 112 10 chr15 7128502 7128814 -78566940 + HAL1 LINE L1 1007 1350 -1157 321 306 99 46 chr15 7128939 7129263 -78566491 + HAL1 LINE L1 1532 1872 -635 1345 146 26 15 chr15 7129437 7129705 -78566049 + L1MA4 LINE L1 6027 6297 -3 308 267 39 36 chr15 7129706 7130048 -78565706 + L1M4 LINE L1 3386 3723 -2423 424 300 58 27 chr15 7130317 7130540 -78565214 + L1M4 LINE L1 4231 4460 -1686 523 183 16 16 chr15 7130567 7130693 -78565061 - L1MD1 LINE L1 0 6242 6117 3120 178 19 17 chr15 7130694 7131336 -78564418 - L1MD2 LINE L1 -183 6176 5534 618 135 0 0 chr15 7131659 7131755 -78563999 - MSTB LTR MaLR 0 426 331 291 323 13 77 chr15 7133283 7133438 -78562316 + MIR3 SINE MIR 1 145 -63 465 175 58 10 chr15 7133500 7133603 -78562151 - MIR SINE MIR -70 192 85 403 276 125 117 chr15 7135958 7136363 -78559391 + L1M2 LINE L1 527 897 -5952 231 36 0 0 chr15 7136363 7136391 -78559363 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 403 276 125 117 chr15 7136391 7136723 -78559031 + L1M2 LINE L1 897 1225 -5624 263 378 27 0 chr15 7138239 7138350 -78557404 + MIR SINE MIR 33 146 -62 249 57 0 0 chr15 7138423 7138458 -78557296 + (A)n Simple_repeat Simple_repeat 1 35 0 278 309 65 30 chr15 7138569 7138737 -78557017 + L1MEd LINE L1 283 456 -5663 2038 117 3 0 chr15 7139058 7139378 -78556376 + AluSx SINE Alu 1 321 0 306 244 49 0 chr15 7139416 7139498 -78556256 - MLT1J2 LTR MaLR -11 439 354 1763 266 85 9 chr15 7139662 7140542 -78555212 - L1M4 LINE L1 -2345 3801 2855 1906 262 105 41 chr15 7140585 7141990 -78553764 - L1ME LINE L1 -586 5972 4438 1985 178 58 9 chr15 7141990 7142435 -78553319 - MLT1C LTR MaLR 0 467 1 1906 262 105 41 chr15 7142435 7142678 -78553076 - L1ME LINE L1 -2120 4438 4212 422 265 42 52 chr15 7143282 7143569 -78552185 - L1ME LINE L1 -2361 4179 3896 304 259 112 9 chr15 7143636 7143752 -78552002 - L1ME LINE L1 -5326 1214 1087 256 265 117 12 chr15 7143877 7144039 -78551715 - L1ME LINE L1 -5448 1095 917 431 318 73 67 chr15 7144549 7144876 -78550878 - L1ME LINE L1 -6190 350 22 1907 138 10 3 chr15 7144896 7145193 -78550561 - AluSx SINE Alu -13 299 1 320 239 58 71 chr15 7145461 7145616 -78550138 - L1ME3 LINE L1 -47 6115 5963 573 247 101 86 chr15 7145761 7145971 -78549783 - L1MC5 LINE L1 -522 7439 7234 2302 113 3 0 chr15 7145971 7146273 -78549481 - AluSq SINE Alu -10 303 1 573 247 101 86 chr15 7146273 7146527 -78549227 - L1MC5 LINE L1 -727 7234 6968 436 280 127 34 chr15 7146683 7146951 -78548803 + LTR16B LTR ERVL 172 464 0 539 217 14 140 chr15 7146958 7147244 -78548510 - L1MC5 LINE L1 -1002 6959 6710 233 243 73 22 chr15 7147569 7147705 -78548049 - HAL1b LINE L1 -556 792 650 234 286 94 28 chr15 7147733 7147946 -78547808 - HAL1b LINE L1 -749 599 373 2604 65 0 0 chr15 7148355 7148663 -78547091 - AluY SINE Alu -3 308 1 1561 264 130 14 chr15 7148966 7149558 -78546196 + MLT2F LTR ERVL 1 661 -2 1790 169 41 39 chr15 7149916 7150465 -78545289 - MLT2A2 LTR ERVL 0 554 1 684 265 132 71 chr15 7150467 7150792 -78544962 - MER45C DNA AcHobo -2 951 607 661 268 96 18 chr15 7150763 7150983 -78544771 - MER45C DNA AcHobo -671 282 46 * 618 324 101 16 chr15 7151273 7151707 -78544047 - HAL1b LINE L1 -817 1598 72 919 202 163 28 chr15 7151998 7152280 -78543474 - L1MDa LINE L1 -6194 346 27 304 312 83 38 chr15 7153035 7153192 -78542562 - L1MC4a LINE L1 -401 7407 7244 412 220 85 14 chr15 7153213 7153354 -78542400 - L1MC5 LINE L1 -735 7226 7076 548 266 152 47 chr15 7153402 7153831 -78541923 + LTR33 LTR ERVL 34 507 -14 3189 161 22 20 chr15 7153859 7154499 -78541255 - L1MA4 LINE L1 0 6300 5660 2222 118 0 0 chr15 7154500 7154804 -78540950 - AluSc SINE Alu -5 304 1 226 338 61 9 chr15 7154945 7155158 -78540596 - L1MEd LINE L1 -5285 834 611 516 184 10 0 chr15 7155374 7155472 -78540282 - AluJ/FLAM SINE Alu -213 99 1 279 0 0 0 chr15 7155663 7155694 -78540060 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 269 37 15 chr15 7155820 7155954 -78539800 - L1M4 LINE L1 -1040 5106 4970 577 247 60 32 chr15 7155983 7156234 -78539520 - L1MC5 LINE L1 -1093 6868 6611 983 234 82 30 chr15 7156568 7156932 -78538822 - L1MC5 LINE L1 -2036 5772 5390 345 164 0 0 chr15 7156933 7156994 -78538760 + HERVL LTR ERVL 516 576 -5078 12657 194 43 45 chr15 7156996 7159908 -78535846 + HERVL LTR ERVL 1299 4204 -1450 820 159 7 0 chr15 7159909 7160047 -78535707 + HERVL LTR ERVL 4362 4500 -1264 299 169 323 40 chr15 7160404 7160528 -78535226 + L1M4 LINE L1 4497 4655 -1491 238 215 41 33 chr15 7160618 7160739 -78535015 + L1M LINE L1 5284 5405 -757 505 299 59 21 chr15 7161099 7161710 -78534044 + L1M4 LINE L1 2855 3488 -2658 297 340 7 0 chr15 7162151 7162295 -78533459 + L1M4 LINE L1 4015 4159 -1987 8458 28 4 0 chr15 7162310 7163373 -78532381 - L1P LINE L1 -798 5348 4282 1512 33 0 0 chr15 7163373 7163552 -78532202 + L1PA4 LINE L1 5976 6155 0 327 264 35 62 chr15 7163591 7163735 -78532019 + L1M4 LINE L1 4219 4358 -1788 3356 191 50 14 chr15 7163738 7164825 -78530929 - L1MCb LINE L1 -4516 2124 825 636 222 5 97 chr15 7164823 7165030 -78530724 - L1MCb LINE L1 -6024 540 353 * 4598 221 50 28 chr15 7165035 7166589 -78529165 + L1 LINE L1 2257 3844 -2302 4646 181 35 2 chr15 7166689 7167705 -78528049 + L1 LINE L1 4105 5154 -992 303 238 0 0 chr15 7167706 7167790 -78527964 - L1M4 LINE L1 -2663 3483 3400 1434 177 76 12 chr15 7167790 7168118 -78527636 - MER92B LTR ERV1 -228 408 60 2302 189 13 13 chr15 7168118 7168590 -78527164 - L1PA16 LINE L1 -1 6165 5694 2276 181 21 210 chr15 7168590 7169087 -78526667 + L1 LINE L1 3448 3883 -2263 1258 185 14 0 chr15 7169087 7169298 -78526456 + AluJo SINE Alu 84 297 -15 2276 181 21 210 chr15 7169298 7169668 -78526086 + L1 LINE L1 3883 4321 -1825 348 175 16 0 chr15 7169673 7169736 -78526018 - MER92B LTR ERV1 -570 66 3 344 294 50 1 chr15 7169759 7169901 -78525853 + L1 LINE L1 4873 5023 -1123 291 264 0 0 chr15 7169903 7169975 -78525779 + L1MEd LINE L1 11 82 -6037 1296 175 30 17 chr15 7170031 7170265 -78525489 - MER8 DNA MER2_type -1 238 2 2496 53 0 31 chr15 7170630 7170948 -78524806 - AluY SINE Alu -3 308 1 4205 115 10 30 chr15 7170970 7171647 -78524107 - L1PA16 LINE L1 -9 6157 5494 2650 175 15 0 chr15 7171660 7172208 -78523546 - L1PA16 LINE L1 -743 5403 4848 923 237 124 25 chr15 7172223 7172699 -78523055 - L1MEc LINE L1 -2680 3964 3442 596 246 73 51 chr15 7172693 7173223 -78522531 - L1MEc LINE L1 -3792 2852 2362 * 865 211 74 0 chr15 7173509 7173751 -78522003 - L1MEc LINE L1 -4856 1790 1531 1309 245 64 18 chr15 7173775 7174290 -78521464 - L1MEc LINE L1 -5085 1457 919 864 237 129 47 chr15 7174587 7174950 -78520804 - MSTD LTR MaLR -2 394 2 26 50 0 0 chr15 7175011 7175051 -78520703 + AT_rich Low_complexity Low_complexity 1 40 0 205 276 92 61 chr15 7176016 7176114 -78519640 - MIR SINE MIR -146 116 16 183 321 0 0 chr15 7176404 7176460 -78519294 + MIR3 SINE MIR 112 167 -41 2946 139 79 18 chr15 7177451 7178019 -78517735 + LTR26 LTR ERV1 1 603 0 39 0 0 0 chr15 7178857 7178896 -78516858 + GC_rich Low_complexity Low_complexity 1 39 0 262 231 19 0 chr15 7179026 7179078 -78516676 - MER31B LTR ERV1 -395 71 19 418 286 56 56 chr15 7179083 7179261 -78516493 + LTR16A1 LTR ERVL 280 457 0 250 270 70 20 chr15 7179502 7179602 -78516152 + ERVL LTR ERVL 2477 2581 -3183 640 195 70 0 chr15 7179603 7179731 -78516023 - L1MC1 LINE L1 0 6333 6197 * 1286 164 36 49 chr15 7179729 7180034 -78515720 - L1MDa LINE L1 -4249 2291 1991 2120 194 48 22 chr15 7180035 7180397 -78515357 + MSTB LTR MaLR 1 377 -49 1896 121 90 36 chr15 7180397 7180753 -78515001 - THE1C LTR MaLR 0 375 1 2120 194 48 22 chr15 7180753 7180803 -78514951 + MSTB LTR MaLR 377 424 -2 9423 163 22 18 chr15 7180803 7181781 -78513973 + MSTB-int LTR MaLR 1 992 -659 2001 136 10 13 chr15 7181781 7182083 -78513671 + AluSg SINE Alu 1 301 -9 9423 163 22 18 chr15 7182083 7182747 -78513007 + MSTB-int LTR MaLR 992 1651 0 2336 151 64 10 chr15 7182747 7183151 -78512603 + MSTB LTR MaLR 1 426 0 6401 225 84 44 chr15 7183152 7183516 -78512238 - L1MDa LINE L1 -4547 1993 1645 2255 169 46 7 chr15 7183516 7183931 -78511823 + MSTB1 LTR MaLR 2 432 0 6401 225 84 44 chr15 7183931 7184356 -78511398 - L1MDa LINE L1 -4895 1645 1238 2256 117 0 3 chr15 7184356 7184654 -78511100 - AluSx SINE Alu -15 297 1 6401 225 84 44 chr15 7184654 7185528 -78510226 - L1MDa LINE L1 -5302 1238 242 195 100 0 0 chr15 7185528 7185558 -78510196 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6401 225 84 44 chr15 7185558 7185795 -78509959 - L1MDa LINE L1 -6298 242 16 299 140 0 0 chr15 7186187 7186237 -78509517 - MLT2B1 LTR ERVL -2 518 469 901 250 5 20 chr15 7186304 7186500 -78509254 - MLT2B1 LTR ERVL -63 457 265 1462 287 81 20 chr15 7186641 7187763 -78507991 + L1ME3A LINE L1 4930 6166 -2 270 0 0 0 chr15 7188130 7188160 -78507594 + (TTG)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr15 7188233 7188285 -78507469 + AT_rich Low_complexity Low_complexity 1 52 0 1031 301 106 21 chr15 7188536 7189036 -78506718 + MLT1G1 LTR MaLR 1 595 0 2179 242 73 9 chr15 7190296 7190460 -78505294 + L1MDa LINE L1 2333 2485 -4055 471 17 0 0 chr15 7190460 7190518 -78505236 + L1PA4 LINE L1 6095 6152 -3 2179 242 73 9 chr15 7190518 7191324 -78504430 + L1MDa LINE L1 2485 3374 -3166 * 2209 230 67 73 chr15 7191317 7191564 -78504190 + L1MDa LINE L1 36 283 -6257 189 0 0 0 chr15 7191564 7191585 -78504169 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2209 230 67 73 chr15 7191585 7192262 -78503492 + L1MDa LINE L1 283 1204 -5336 1809 222 93 39 chr15 7192279 7192734 -78503020 + L1MDa LINE L1 3646 4154 -2386 2570 57 0 0 chr15 7192734 7193033 -78502721 + AluY SINE Alu 1 299 -12 1809 222 93 39 chr15 7193033 7193274 -78502480 + L1MDa LINE L1 4154 4380 -2160 207 363 19 25 chr15 7193319 7193476 -78502278 - MIR SINE MIR -73 189 34 200 132 0 53 chr15 7194322 7194360 -78501394 + L2 LINE L2 3262 3297 -16 1396 166 29 4 chr15 7194372 7194613 -78501141 - MLT1A1 LTR MaLR -1 364 118 265 151 57 25 chr15 7198757 7198916 -78496838 + (CTGTG)n Simple_repeat Simple_repeat 1 164 0 191 36 36 0 chr15 7201527 7201555 -78494199 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2212 88 7 29 chr15 7204443 7204749 -78491005 - AluSx SINE Alu -13 299 1 2385 74 0 10 chr15 7205141 7205438 -78490316 + AluY SINE Alu 1 294 -17 1560 142 40 4 chr15 7205551 7205804 -78489950 + MSTB1 LTR MaLR 167 428 -4 1896 192 16 0 chr15 7205815 7206228 -78489526 - MLT2B1 LTR ERVL -50 465 1 736 193 66 6 chr15 7207559 7207740 -78488014 - L1MD3 LINE L1 -14 7981 7790 180 0 0 0 chr15 7207968 7207988 -78487766 + (TG)n Simple_repeat Simple_repeat 2 21 0 1310 255 35 19 chr15 7209094 7209521 -78486233 + L1MC4a LINE L1 5508 5941 -1867 208 281 152 22 chr15 7209736 7209960 -78485794 + L2 LINE L2 2804 3056 -257 1527 210 28 62 chr15 7210536 7210936 -78484818 - MLT1B LTR MaLR -4 386 1 1799 233 89 100 chr15 7210937 7211820 -78483934 - MLT1B-int LTR MaLR -1 1370 497 2120 121 121 26 chr15 7211820 7212112 -78483642 - Tigger1 DNA MER2_type 0 2418 2079 2233 110 7 3 chr15 7212112 7212420 -78483334 - AluSg SINE Alu 0 310 2 2120 121 121 26 chr15 7212420 7212514 -78483240 - Tigger1 DNA MER2_type -339 2079 1995 2146 141 0 6 chr15 7213036 7213348 -78482406 - AluSg SINE Alu 0 310 1 484 273 18 0 chr15 7213589 7213699 -78482055 - MER81 DNA DNA 0 114 3 207 0 0 0 chr15 7213877 7213900 -78481854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3609 76 41 6 chr15 7214464 7214948 -78480806 - MER41A LTR ERV1 -53 501 1 530 267 40 65 chr15 7216043 7216290 -78479464 + MER46C DNA MER2_type 2 242 -96 1742 52 0 19 chr15 7217382 7217594 -78478160 - AluY SINE Alu -103 208 1 435 232 71 54 chr15 7217600 7217824 -78477930 + L1MC5 LINE L1 7685 7912 -49 407 272 44 0 chr15 7219169 7219305 -78476449 - Charlie1 DNA MER1_type 0 2761 2620 * 559 207 112 95 chr15 7219287 7219519 -78476235 - Charlie1 DNA MER1_type -2521 240 5 317 237 85 25 chr15 7219803 7219921 -78475833 - MLT1I LTR MaLR -244 165 41 2402 75 7 0 chr15 7219928 7220220 -78475534 - AluY SINE Alu -9 302 9 1914 124 71 0 chr15 7220578 7220860 -78474894 - AluSx SINE Alu -10 302 1 236 295 9 62 chr15 7220944 7221056 -78474698 + MIR SINE MIR 136 241 -21 259 219 68 0 chr15 7222039 7222112 -78473642 + L1MEc LINE L1 1129 1206 -5217 * 357 242 10 20 chr15 7222111 7222210 -78473544 + L1MEc LINE L1 2677 2774 -4348 4031 257 60 15 chr15 7222231 7223657 -78472097 + L1MD2 LINE L1 3636 5126 -1815 3870 111 7 32 chr15 7223657 7224252 -78471502 - LTR12 LTR ERV1 -134 580 1 5077 208 45 32 chr15 7224253 7226244 -78469510 + L1MD2 LINE L1 5123 7145 -9 1462 215 9 25 chr15 7226263 7226588 -78469166 + L1MC1 LINE L1 6009 6328 -5 515 278 68 12 chr15 7226595 7226982 -78468772 + L1MEc LINE L1 2772 3145 -3796 319 201 36 65 chr15 7227045 7227153 -78468601 - L1M4b LINE L1 -5283 1263 1151 453 267 37 21 chr15 7227169 7227360 -78468394 - L1M4b LINE L1 -6335 207 14 1714 185 13 3 chr15 7227744 7228042 -78467712 + AluJo SINE Alu 1 301 -11 1692 124 31 99 chr15 7228101 7228423 -78467331 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr15 7228899 7228934 -78466820 + AT_rich Low_complexity Low_complexity 1 35 0 322 209 50 97 chr15 7229079 7229288 -78466466 + L1MCc LINE L1 12 519 -5903 667 229 91 47 chr15 7229778 7230097 -78465657 + L1MCc LINE L1 1665 1997 -4944 1076 270 14 0 chr15 7230503 7230781 -78464973 - MLT1-int LTR MaLR -770 601 320 611 64 0 0 chr15 7230781 7230859 -78464895 - AluY SINE Alu -16 295 218 843 261 32 16 chr15 7230861 7231110 -78464644 - MLT1-int LTR MaLR -1118 253 1 1720 175 3 3 chr15 7231114 7231423 -78464331 - AluJb SINE Alu -1 311 3 195 184 0 0 chr15 7232103 7232141 -78463613 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 240 30 20 chr15 7233582 7233682 -78462072 + (TA)n Simple_repeat Simple_repeat 1 101 0 2371 141 27 3 chr15 7233701 7234076 -78461678 - Tigger2 DNA MER2_type -1 2717 2334 7855 22 1 0 chr15 7234143 7235768 -78459986 + L1PA3 LINE L1 4530 6155 0 1672 141 3 21 chr15 7235909 7236193 -78459561 - L1PA16 LINE L1 0 6166 5888 211 282 0 73 chr15 7236542 7236666 -78459088 + L2 LINE L2 3195 3309 -4 21 0 0 0 chr15 7236993 7237014 -78458740 + AT_rich Low_complexity Low_complexity 1 21 0 506 200 78 9 chr15 7237685 7237800 -78457954 - MIR SINE MIR -103 159 37 1313 211 42 7 chr15 7238092 7238377 -78457377 + MLT1F LTR MaLR 243 537 -5 180 355 0 0 chr15 7238453 7238515 -78457239 + L2 LINE L2 3252 3313 0 266 270 0 0 chr15 7238550 7238613 -78457141 - L2 LINE L2 -5 3308 3246 309 318 85 23 chr15 7238664 7238840 -78456914 - LTR16C LTR ERVL -218 273 87 2325 83 0 3 chr15 7239074 7239386 -78456368 + AluSq SINE Alu 1 311 -2 1350 224 55 22 chr15 7239852 7240214 -78455540 + MLT1A2 LTR MaLR 1 374 0 2324 91 0 0 chr15 7240578 7240886 -78454868 - AluY SINE Alu -3 308 1 216 229 0 29 chr15 7241298 7241368 -78454386 + T-rich Low_complexity Low_complexity 2 69 0 1527 173 41 77 chr15 7244133 7244185 -78451569 - MLT1B LTR MaLR -16 374 322 2067 107 4 0 chr15 7244185 7244504 -78451250 + AluSq SINE Alu 1 320 0 1527 173 41 77 chr15 7244504 7244838 -78450916 - MLT1B LTR MaLR -68 322 1 392 298 55 34 chr15 7244927 7245131 -78450623 + MIR SINE MIR 11 219 -43 186 43 0 0 chr15 7245507 7245530 -78450224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1153 133 87 18 chr15 7245618 7245836 -78449918 - THE1C LTR MaLR 0 375 143 2596 217 96 51 chr15 7295836 7296596 -78399158 - L1M4 LINE L1 -846 5300 4507 241 324 10 0 chr15 7296593 7296695 -78399059 + HAL1 LINE L1 1506 1608 -899 * 468 316 210 14 chr15 7296706 7297292 -78398462 - L2 LINE L2 -1480 1834 1134 2025 119 24 0 chr15 7297342 7297636 -78398118 + AluSx SINE Alu 1 301 -11 325 302 148 20 chr15 7297824 7297973 -78397781 - MER5B DNA MER1_type -1 177 10 1546 78 59 4 chr15 7298491 7298520 -78397234 + L1M4c LINE L1 1447 1473 -4909 6904 65 4 0 chr15 7298520 7299978 -78395776 - L1PA5 LINE L1 0 6154 4722 1546 78 59 4 chr15 7299978 7300176 -78395578 + L1M4c LINE L1 1473 2172 -4210 186 143 79 16 chr15 7301251 7301377 -78394377 + (TA)n Simple_repeat Simple_repeat 1 134 0 35 24 0 0 chr15 7301384 7301426 -78394328 + AT_rich Low_complexity Low_complexity 1 42 0 34 42 0 0 chr15 7301478 7301526 -78394228 + AT_rich Low_complexity Low_complexity 1 48 0 186 303 96 11 chr15 7302054 7302232 -78393522 - L2 LINE L2 -195 3077 2885 318 236 36 86 chr15 7302324 7302404 -78393350 - L2 LINE L2 -528 2786 2714 2189 107 17 0 chr15 7302404 7302704 -78393050 - AluSq SINE Alu -8 305 1 318 236 36 86 chr15 7302704 7302763 -78392991 - L2 LINE L2 -600 2714 2654 802 273 98 52 chr15 7302964 7303640 -78392114 - L1ME3A LINE L1 -1 6163 5423 2196 117 16 7 chr15 7304888 7305016 -78390738 + AluSx SINE Alu 1 126 -186 216 0 0 0 chr15 7305016 7305040 -78390714 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2196 117 16 7 chr15 7305040 7305220 -78390534 + AluSx SINE Alu 126 312 0 1434 206 133 69 chr15 7306593 7307126 -78388628 + L1ME3A LINE L1 5598 6164 -6 227 79 26 0 chr15 7308692 7308730 -78387024 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 247 188 0 chr15 7308734 7308819 -78386935 - MIR SINE MIR -71 191 91 522 0 0 0 chr15 7309388 7309446 -78386308 + (TG)n Simple_repeat Simple_repeat 2 59 0 2479 64 0 3 chr15 7310338 7310634 -78385120 - AluY SINE Alu -16 295 1 396 267 9 26 chr15 7310848 7310964 -78384790 + CT-rich Low_complexity Low_complexity 4 117 0 270 153 0 0 chr15 7310992 7311051 -78384703 + (CA)n Simple_repeat Simple_repeat 1 59 0 231 61 0 0 chr15 7311053 7311086 -78384668 + (TC)n Simple_repeat Simple_repeat 2 34 0 620 165 10 0 chr15 7311169 7311266 -78384488 + Charlie1a DNA MER1_type 1 98 -1357 6227 130 26 4 chr15 7311269 7312333 -78383421 + L1PB1 LINE L1 4704 5802 -349 425 51 39 13 chr15 7312333 7312411 -78383343 + (TA)n Simple_repeat Simple_repeat 2 81 0 6227 130 26 4 chr15 7312411 7312767 -78382987 + L1PB1 LINE L1 5802 6149 -2 238 271 0 14 chr15 7312767 7312837 -78382917 - L1M4 LINE L1 -2584 3562 3494 4116 188 92 18 chr15 7312842 7313784 -78381970 + Charlie1a DNA MER1_type 95 1106 -349 371 214 110 39 chr15 7313825 7314007 -78381747 - L1ME3A LINE L1 -209 5961 5767 1135 212 0 4 chr15 7314013 7314239 -78381515 - L1PA16 LINE L1 -8 6158 5934 1475 106 0 19 chr15 7314339 7314546 -78381208 - AluSq SINE Alu -110 203 1 594 258 139 0 chr15 7315037 7315246 -78380508 - MIR SINE MIR -4 258 21 2415 85 0 16 chr15 7315631 7315947 -78379807 + AluY SINE Alu 1 311 0 979 248 18 5 chr15 7316746 7316964 -78378790 - MER58A DNA MER1_type -2 222 2 1015 189 0 0 chr15 7317566 7317735 -78378019 - MLT1A1 LTR MaLR 0 365 197 384 174 0 29 chr15 7317739 7317808 -78377946 - MLT1A1 LTR MaLR -298 67 1 796 42 0 0 chr15 7319235 7319330 -78376424 - L1P2 LINE L1 -619 5535 5441 1578 237 68 44 chr15 7319380 7319924 -78375830 - L1MC4 LINE L1 -506 7536 6980 861 184 48 0 chr15 7320462 7320609 -78375145 - FRAM SINE Alu -14 162 9 1072 274 79 51 chr15 7320683 7321290 -78374464 + L2 LINE L2 2310 2933 -381 3356 126 46 59 chr15 7321640 7321777 -78373977 + MER7C DNA MER2_type 1 138 -2890 2394 64 7 3 chr15 7321777 7322073 -78373681 - AluY SINE Alu -12 299 3 3356 126 46 59 chr15 7322073 7322545 -78373209 + MER7C DNA MER2_type 138 602 0 221 339 101 0 chr15 7323231 7323340 -78372414 + L2 LINE L2 3142 3261 -11 22 0 0 0 chr15 7324770 7324792 -78370962 + GC_rich Low_complexity Low_complexity 1 22 0 2436 104 0 0 chr15 7325142 7325509 -78370245 - AluSg SINE Alu 0 367 1 543 267 68 15 chr15 7326224 7326430 -78369324 + L2 LINE L2 2949 3165 -148 212 244 37 49 chr15 7326521 7326603 -78369151 - L2 LINE L2 -51 3221 3141 3976 176 21 32 chr15 7326899 7327505 -78368249 + LTR39 LTR ERV1 1 599 -184 2243 121 3 0 chr15 7327505 7327811 -78367943 - AluSx SINE Alu -5 307 1 3976 176 21 32 chr15 7327811 7327995 -78367759 + LTR39 LTR ERV1 599 783 0 21 57 0 0 chr15 7328148 7328183 -78367571 + AT_rich Low_complexity Low_complexity 1 35 0 1247 256 83 48 chr15 7329307 7329886 -78365868 + L1ME1 LINE L1 823 1421 -4988 4190 233 75 33 chr15 7330000 7330316 -78365438 + L1ME1 LINE L1 4180 4481 -1945 261 0 0 0 chr15 7330316 7330345 -78365409 + (CA)n Simple_repeat Simple_repeat 2 30 0 4190 233 75 33 chr15 7330345 7331693 -78364061 + L1ME1 LINE L1 4481 5953 -473 2229 101 6 25 chr15 7331693 7332009 -78363745 + AluSg SINE Alu 1 310 0 4190 233 75 33 chr15 7332009 7332504 -78363250 + L1ME1 LINE L1 5953 6426 0 417 223 11 11 chr15 7332786 7332880 -78362874 - L1ME LINE L1 -507 5919 5826 1112 234 57 29 chr15 7332885 7333570 -78362184 - L1MDb LINE L1 -3653 2753 2059 1956 153 14 0 chr15 7333596 7333890 -78361864 - AluJb SINE Alu -13 299 2 282 315 31 8 chr15 7337199 7337326 -78358428 - L2 LINE L2 -4 3309 3180 525 254 46 23 chr15 7337432 7337605 -78358149 + MER5B DNA MER1_type 2 178 0 2637 225 92 35 chr15 7338124 7338956 -78356798 - L1MDb LINE L1 -4411 1995 1109 2152 114 0 0 chr15 7338956 7339267 -78356487 - AluSx SINE Alu 0 311 1 2637 225 92 35 chr15 7339267 7339620 -78356134 - L1MDb LINE L1 -5297 1109 777 2695 157 74 9 chr15 7340111 7340666 -78355088 - L1MB8 LINE L1 -16 6162 5572 361 190 139 0 chr15 7340767 7340846 -78354908 - MLT1B LTR MaLR -300 90 1 332 22 0 22 chr15 7342998 7343044 -78352710 + (TG)n Simple_repeat Simple_repeat 2 46 0 317 340 40 0 chr15 7343903 7344053 -78351701 + MIR SINE MIR 92 247 -15 3624 51 0 22 chr15 7348595 7349001 -78346753 + MLT2A1 LTR ERVL 1 397 -47 414 57 0 0 chr15 7349001 7349054 -78346700 + (CA)n Simple_repeat Simple_repeat 2 54 0 3624 51 0 22 chr15 7349054 7349101 -78346653 + MLT2A1 LTR ERVL 397 444 0 36 82 0 0 chr15 7349272 7349357 -78346397 + AT_rich Low_complexity Low_complexity 1 85 0 180 0 0 0 chr15 7350070 7350090 -78345664 + (T)n Simple_repeat Simple_repeat 1 20 0 1600 204 23 69 chr15 7351385 7351777 -78343977 - MLT1A2 LTR MaLR 0 374 1 869 296 92 40 chr15 7351903 7352569 -78343185 - HAL1b LINE L1 -295 1053 354 2139 118 5 62 chr15 7352636 7353010 -78342744 - THE1A LTR MaLR -2 353 1 11769 99 5 0 chr15 7353010 7354582 -78341172 - THE1A-int LTR MaLR 0 1580 1 2011 136 21 51 chr15 7354582 7354957 -78340797 - THE1B LTR MaLR 0 364 1 1952 150 0 27 chr15 7355084 7355384 -78340370 + AluSx SINE Alu 1 292 -20 826 176 96 0 chr15 7355767 7355955 -78339799 - L1MA6 LINE L1 -4 6296 6091 183 277 0 0 chr15 7356450 7356497 -78339257 + L2 LINE L2 3267 3313 0 227 289 105 9 chr15 7357826 7357940 -78337814 - MIR SINE MIR -26 236 112 1443 232 72 5 chr15 7358360 7358774 -78336980 + L1ME2 LINE L1 4740 5181 -965 1316 271 119 18 chr15 7358778 7359530 -78336224 + L1ME2 LINE L1 5282 6137 -27 3575 158 75 7 chr15 7359883 7360560 -78335194 - L1MB2 LINE L1 -7 6164 5442 183 129 0 0 chr15 7361707 7361738 -78334016 + (CAGAA)n Simple_repeat Simple_repeat 3 33 0 204 40 0 0 chr15 7361831 7361856 -78333898 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 809 208 27 6 chr15 7362651 7362834 -78332920 - MER53 DNA DNA 0 189 3 543 216 23 11 chr15 7363086 7363262 -78332492 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1332 119 75 40 chr15 7363278 7363504 -78332250 - MER46A DNA MER2_type -2 234 1 4708 237 60 15 chr15 7363938 7364686 -78331068 + L1M4 LINE L1 3623 4336 -1810 2285 93 0 59 chr15 7364686 7365008 -78330746 + AluSg SINE Alu 1 303 -7 4708 237 60 15 chr15 7365008 7365734 -78330020 + L1M4 LINE L1 4336 5163 -983 230 343 0 0 chr15 7366338 7366408 -78329346 + L2 LINE L2 2930 2999 -314 408 318 50 22 chr15 7366443 7366720 -78329034 + LTR40c LTR ERVL 68 352 -113 1701 188 15 52 chr15 7367193 7367598 -78328156 + MLT1B LTR MaLR 1 390 0 181 258 0 16 chr15 7367870 7367932 -78327822 - L2 LINE L2 -73 3240 3180 677 284 23 23 chr15 7367955 7368173 -78327581 + HsTC2 DNA Tc2 296 513 -1385 307 269 107 61 chr15 7368308 7368400 -78327354 + HsTC2 DNA Tc2 1633 1719 -179 2210 114 3 0 chr15 7368400 7368689 -78327065 + AluSx SINE Alu 1 290 -22 307 269 107 61 chr15 7368689 7368793 -78326961 + HsTC2 DNA Tc2 1719 1838 -60 1953 177 34 46 chr15 7368824 7369173 -78326581 + MLT2D LTR ERVL 4 349 -65 561 63 32 0 chr15 7369173 7369268 -78326486 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1953 177 34 46 chr15 7369268 7369331 -78326423 + MLT2D LTR ERVL 349 411 -3 232 247 52 13 chr15 7369604 7369681 -78326073 - MIR SINE MIR -116 146 67 426 263 15 23 chr15 7370749 7370882 -78324872 + L2 LINE L2 3182 3313 0 439 301 160 19 chr15 7371121 7371718 -78324036 + L1M4 LINE L1 4741 5421 -749 403 301 205 23 chr15 7372876 7373741 -78322013 - L2 LINE L2 -351 2963 1942 2483 84 0 0 chr15 7374107 7374415 -78321339 + AluSc SINE Alu 1 308 -1 654 166 31 43 chr15 7375069 7375232 -78320522 + MER5A DNA MER1_type 6 166 -23 568 68 14 0 chr15 7375539 7375612 -78320142 - AluSp SINE Alu -174 139 66 838 80 26 0 chr15 7375612 7375725 -78320029 + AluSp/q SINE Alu 187 302 -11 294 307 37 49 chr15 7376433 7376596 -78319158 + MIR SINE MIR 33 193 -69 258 203 51 0 chr15 7377100 7377159 -78318595 + MLT1K LTR MaLR 517 578 -10 456 247 124 34 chr15 7379119 7379157 -78316597 - MIR SINE MIR 0 262 229 2392 125 89 0 chr15 7379157 7379550 -78316204 - MSTC LTR MaLR 0 428 1 456 247 124 34 chr15 7379550 7379689 -78316065 - MIR SINE MIR -33 229 69 229 287 91 42 chr15 7379831 7379974 -78315780 - MLT1J1 LTR MaLR -164 282 133 3945 205 70 3 chr15 7380746 7381620 -78314134 - Charlie1a DNA MER1_type -4 1451 520 529 300 70 36 chr15 7381727 7381892 -78313862 - L1M4 LINE L1 -842 5304 5146 2029 149 0 0 chr15 7381892 7382194 -78313560 - AluSx SINE Alu -9 303 2 529 300 70 36 chr15 7382194 7382415 -78313339 - L1M4 LINE L1 -1000 5146 4905 1130 213 125 86 chr15 7384170 7384587 -78311167 - Charlie1a DNA MER1_type -969 486 54 699 291 124 25 chr15 7384743 7385217 -78310537 + L2 LINE L2 1992 2512 -802 193 254 42 42 chr15 7385496 7385567 -78310187 + L2 LINE L2 2866 2936 -336 1248 243 157 10 chr15 7386439 7386895 -78308859 - MLT1G LTR MaLR -96 494 1 294 73 0 0 chr15 7389217 7389258 -78306496 + (TG)n Simple_repeat Simple_repeat 1 41 0 1274 211 73 10 chr15 7390642 7390972 -78304782 + MLT1A1 LTR MaLR 1 362 -3 745 11 0 0 chr15 7391041 7391128 -78304626 - L1PA3 LINE L1 0 6155 6069 394 314 197 20 chr15 7392396 7392695 -78303059 + L2 LINE L2 2962 3313 0 270 0 0 0 chr15 7392880 7392910 -78302844 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 337 44 12 chr15 7394264 7394368 -78301386 - MIR SINE MIR -47 161 55 1827 160 45 15 chr15 7394385 7394722 -78301032 + MLT1A1 LTR MaLR 14 360 -5 229 270 0 0 chr15 7394905 7394979 -78300775 + (TA)n Simple_repeat Simple_repeat 2 75 0 611 273 35 0 chr15 7395319 7395491 -78300263 - MER5B DNA MER1_type 0 178 1 298 282 40 24 chr15 7395588 7395712 -78300042 - L2 LINE L2 -30 3283 3158 2871 3 0 0 chr15 7395727 7396028 -78299726 - AluYa5 SINE Alu -10 301 1 649 308 68 39 chr15 7396384 7396722 -78299032 - L2 LINE L2 -686 2628 2281 3422 254 70 17 chr15 7396795 7398016 -78297738 - L1M4 LINE L1 -1847 4299 3015 1704 223 44 24 chr15 7398020 7398478 -78297276 - L1ME1 LINE L1 0 6166 5700 840 231 10 10 chr15 7398817 7399016 -78296738 + MER96B DNA MER1_type? 1 199 -218 248 331 131 19 chr15 7399251 7399411 -78296343 + MIR SINE MIR 22 199 -63 3357 219 83 50 chr15 7400848 7402170 -78293584 - L1MC5 LINE L1 -34 7927 6551 480 331 35 26 chr15 7402300 7402611 -78293143 - L1 LINE L1 -1815 4331 4018 423 0 0 0 chr15 7402623 7402670 -78293084 + (CA)n Simple_repeat Simple_repeat 2 48 0 2988 56 24 0 chr15 7402681 7403058 -78292696 - L1PA10 LINE L1 -15 6153 5768 14526 180 30 9 chr15 7403063 7408575 -78287179 - L1PB1 LINE L1 0 6867 1093 3617 215 68 12 chr15 7408579 7409536 -78286218 - L1PB1 LINE L1 -5818 1045 36 4124 101 32 8 chr15 7409546 7410100 -78285654 - L1P4 LINE L1 -387 5781 5196 2621 30 0 13 chr15 7410100 7410399 -78285355 + AluY SINE Alu 1 295 -16 4124 101 32 8 chr15 7410399 7410887 -78284867 - L1P4 LINE L1 -972 5196 4721 562 315 34 88 chr15 7410957 7411150 -78284604 - L1M4 LINE L1 -2251 3895 3693 1868 121 4 0 chr15 7411150 7411423 -78284331 - L1PA15 LINE L1 0 6165 5892 562 315 34 88 chr15 7411423 7411797 -78283957 - L1M4 LINE L1 -2453 3693 3359 395 205 36 0 chr15 7412431 7412514 -78283240 - Tigger5 DNA MER2_type 0 2323 2238 335 192 14 14 chr15 7412564 7412637 -78283117 - Tigger5 DNA MER2_type 0 2323 2251 234 253 89 79 chr15 7414254 7414444 -78281310 + MLT1K LTR MaLR 395 586 -2 255 279 87 10 chr15 7414652 7414756 -78280998 + MLT1J LTR MaLR 342 453 -58 644 268 75 56 chr15 7415068 7415592 -78280162 - L1MC/D LINE L1 -517 5647 5268 1018 275 90 14 chr15 7417016 7417383 -78278371 + MLT1I LTR MaLR 1 395 -14 297 233 58 0 chr15 7417396 7417482 -78278272 + L2 LINE L2 2188 2278 -1036 365 324 58 6 chr15 7417490 7417663 -78278091 + L2 LINE L2 2077 2258 -1056 321 26 0 0 chr15 7417762 7417800 -78277954 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr15 7417893 7417920 -78277834 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 318 228 65 76 chr15 7418865 7419049 -78276705 - L1MC/D LINE L1 -1467 4679 4498 755 346 84 31 chr15 7419082 7419761 -78275993 + L2 LINE L2 1865 2579 -735 184 322 46 107 chr15 7420074 7420335 -78275419 + L2 LINE L2 2993 3237 -35 1718 133 84 31 chr15 7420372 7420694 -78275060 + MER44D DNA MER2_type 1 609 0 194 281 109 0 chr15 7420745 7420809 -78274945 + MIR3 SINE MIR 9 79 -129 1770 167 35 12 chr15 7421385 7421727 -78274027 + MLT1A1 LTR MaLR 1 350 -15 339 327 10 0 chr15 7422090 7422194 -78273560 + MIR SINE MIR 41 145 -117 3976 125 39 3 chr15 7422697 7423320 -78272434 + L1MC1 LINE L1 5689 6333 0 192 263 40 0 chr15 7424598 7424674 -78271080 + MIR SINE MIR 158 236 -26 497 311 212 20 chr15 7424824 7425126 -78270628 + L2 LINE L2 2912 3271 -1 6775 70 20 2 chr15 7425530 7426673 -78269081 + L1PA13 LINE L1 4335 5513 -650 2195 95 0 41 chr15 7426673 7426989 -78268765 + AluSx SINE Alu 1 303 -9 6775 70 20 2 chr15 7426989 7427648 -78268106 + L1PA13 LINE L1 5513 6159 -4 344 265 10 20 chr15 7427738 7427840 -78267914 + L1MC5 LINE L1 7813 7913 -48 30 43 0 43 chr15 7428143 7428213 -78267541 + AT_rich Low_complexity Low_complexity 1 67 0 1855 139 4 0 chr15 7428272 7428531 -78267223 - AluSx SINE Alu -30 282 23 276 316 114 42 chr15 7428707 7429226 -78266528 + L1ME LINE L1 5267 5822 -340 186 43 0 0 chr15 7430814 7430837 -78264917 + (AAATG)n Simple_repeat Simple_repeat 2 24 0 1708 148 81 0 chr15 7431034 7431305 -78264449 - AluSx SINE Alu -19 293 1 190 315 69 72 chr15 7431315 7431661 -78264093 - L2 LINE L2 -24 3289 2945 798 253 70 57 chr15 7431980 7432674 -78263080 + L1MDa LINE L1 2403 3287 -3253 249 221 22 177 chr15 7432670 7432764 -78262990 + L1MC5 LINE L1 7759 7813 -148 * 749 54 0 0 chr15 7432764 7432856 -78262898 - L1PA6 LINE L1 -7 6147 6056 249 221 22 177 chr15 7432856 7432942 -78262812 + L1MC5 LINE L1 7813 7911 -50 484 276 117 38 chr15 7432992 7433997 -78261757 + L1MDa LINE L1 3254 4458 -2082 5028 243 64 80 chr15 7434002 7435053 -78260701 + L1ME2 LINE L1 2215 3282 -2951 854 170 0 0 chr15 7435053 7435194 -78260560 + FLAM_C SINE Alu 1 141 -2 5028 243 64 80 chr15 7435194 7437764 -78257990 + L1ME2 LINE L1 3282 5859 -374 245 250 0 62 chr15 7437811 7437891 -78257863 + L1ME2 LINE L1 5859 5933 -298 690 268 36 13 chr15 7438077 7438301 -78257453 + L1ME2 LINE L1 5995 6223 -10 * 4014 207 129 16 chr15 7438298 7439613 -78256141 + L1MC4 LINE L1 6345 7713 -95 297 243 19 19 chr15 7439614 7439717 -78256037 + (TA)n Simple_repeat Simple_repeat 1 103 0 284 268 28 42 chr15 7439731 7439873 -78255881 + L1MC4 LINE L1 7902 8041 -1 896 189 33 6 chr15 7439895 7440075 -78255679 + L1ME LINE L1 5539 5723 -447 489 224 0 0 chr15 7440073 7440171 -78255583 - L1ME LINE L1 -363 5807 5710 * 799 248 105 33 chr15 7440163 7440254 -78255500 + L1ME LINE L1 5375 5458 -712 2754 28 6 0 chr15 7440254 7440575 -78255179 + L1PA4 LINE L1 5831 6153 -2 799 248 105 33 chr15 7440575 7440874 -78254880 + L1ME LINE L1 5458 5793 -377 * 5647 178 16 40 chr15 7440870 7441403 -78254351 + L1PA16 LINE L1 4027 4572 -1594 2137 121 17 0 chr15 7441403 7441700 -78254054 + AluSq SINE Alu 1 302 -11 5647 178 16 40 chr15 7441700 7443062 -78252692 + L1PA16 LINE L1 4572 5865 -301 1101 208 4 73 chr15 7443165 7443439 -78252315 + MLT1B LTR MaLR 132 386 -4 251 132 59 0 chr15 7444049 7444117 -78251637 + (TG)n Simple_repeat Simple_repeat 1 72 0 283 189 20 33 chr15 7444160 7444313 -78251441 + (TG)n Simple_repeat Simple_repeat 2 152 0 570 256 45 0 chr15 7446290 7446446 -78249308 + MER103 DNA DNA 3 165 -1 347 339 75 18 chr15 7446775 7447159 -78248595 - MLT1I LTR MaLR -1 408 3 2230 130 0 0 chr15 7447275 7447574 -78248180 - AluSx SINE Alu -13 299 1 203 309 82 10 chr15 7448205 7448302 -78247452 - MIR SINE MIR -69 139 36 2349 62 20 14 chr15 7449159 7449451 -78246303 + AluY SINE Alu 1 294 -17 736 204 11 43 chr15 7450588 7450774 -78244980 + MLT1A1 LTR MaLR 10 189 -176 819 268 5 0 chr15 7450794 7450992 -78244762 + MLT1A1 LTR MaLR 164 362 -3 627 293 154 17 chr15 7451184 7451542 -78244212 + MLT1I LTR MaLR 3 409 0 23 0 0 0 chr15 7451573 7451596 -78244158 + AT_rich Low_complexity Low_complexity 1 23 0 247 146 0 21 chr15 7452127 7452175 -78243579 + L1MD3 LINE L1 7938 7984 -11 243 241 56 19 chr15 7452424 7452586 -78243168 + (TA)n Simple_repeat Simple_repeat 1 168 0 257 247 141 12 chr15 7453242 7453327 -78242427 - MIR SINE MIR -27 235 140 4564 167 40 23 chr15 7453527 7453873 -78241881 - L1MB8 LINE L1 0 6178 5839 2296 84 0 40 chr15 7453873 7454195 -78241559 - AluSc SINE Alu 0 309 1 4564 167 40 23 chr15 7454195 7454914 -78240840 - L1MB8 LINE L1 -339 5839 5097 238 302 90 32 chr15 7457337 7457526 -78238228 + L1MC/D LINE L1 3882 4081 -2065 336 223 161 44 chr15 7457801 7458075 -78237679 + L1MC/D LINE L1 4524 4829 -1317 258 270 14 0 chr15 7458121 7458195 -78237559 + MLT1L LTR MaLR 3 77 -538 21 0 0 0 chr15 7458670 7458691 -78237063 + AT_rich Low_complexity Low_complexity 1 21 0 659 304 105 36 chr15 7458900 7459262 -78236492 + MLT1J2 LTR MaLR 62 448 -2 2216 112 24 37 chr15 7459303 7459679 -78236075 + THE1C LTR MaLR 3 373 -2 10984 101 14 33 chr15 7459681 7461292 -78234462 + THE1C-int LTR MaLR 1 1580 0 2013 103 44 82 chr15 7461294 7461682 -78234072 + THE1C LTR MaLR 3 375 0 266 299 53 66 chr15 7461830 7462074 -78233680 + L1MC/D LINE L1 5303 5543 -2265 356 278 20 13 chr15 7462897 7463048 -78232706 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 252 170 0 0 chr15 7463186 7463239 -78232515 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 381 255 5 54 chr15 7463248 7463432 -78232322 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1576 244 111 12 chr15 7464109 7464605 -78231149 + L1M4 LINE L1 4463 5007 -1139 187 254 6 36 chr15 7464633 7464798 -78230956 + (TG)n Simple_repeat Simple_repeat 1 160 0 203 138 0 0 chr15 7465467 7465496 -78230258 + L2 LINE L2 3216 3244 -28 275 125 0 0 chr15 7465510 7465558 -78230196 + L1MA3 LINE L1 6258 6305 0 1596 231 97 43 chr15 7466261 7466799 -78228955 - MLT1F1 LTR MaLR 0 567 1 424 216 69 99 chr15 7467114 7467256 -78228498 + LTR37B LTR ERV1 185 319 -149 2305 63 0 46 chr15 7467256 7467558 -78228196 + AluY SINE Alu 1 288 -23 424 216 69 99 chr15 7467558 7467647 -78228107 + LTR37B LTR ERV1 319 409 -59 210 302 16 93 chr15 7469453 7469582 -78226172 - MIR SINE MIR -130 132 14 835 286 101 49 chr15 7469699 7469826 -78225928 + L1MC4 LINE L1 7126 7245 -797 2379 88 0 7 chr15 7469826 7470122 -78225632 + AluSc SINE Alu 1 294 -15 835 286 101 49 chr15 7470122 7470773 -78224981 + L1MC4 LINE L1 7245 8042 0 40 59 0 0 chr15 7471449 7471517 -78224237 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 7471910 7471952 -78223802 + AT_rich Low_complexity Low_complexity 1 42 0 2656 192 15 65 chr15 7472309 7472986 -78222768 + L1M4 LINE L1 4658 5300 -846 * 5143 143 37 3 chr15 7472980 7474548 -78221206 + L1MA4 LINE L1 4486 6110 -190 3572 144 29 53 chr15 7476372 7476739 -78219015 - L1MA8 LINE L1 -155 6136 5793 2566 50 3 0 chr15 7476739 7477036 -78218718 - AluY SINE Alu -13 298 1 3572 144 29 53 chr15 7477036 7477391 -78218363 - L1MA8 LINE L1 -498 5793 5431 205 287 78 30 chr15 7479516 7479684 -78216070 - MIR SINE MIR -11 251 75 22 0 0 0 chr15 7480031 7480053 -78215701 + AT_rich Low_complexity Low_complexity 1 22 0 628 230 40 0 chr15 7480316 7480464 -78215290 + MER5A DNA MER1_type 1 154 -35 2561 61 0 0 chr15 7480974 7481271 -78214483 - AluY SINE Alu -14 297 1 222 258 0 0 chr15 7482414 7482476 -78213278 + CT-rich Low_complexity Low_complexity 1 62 0 2524 211 42 24 chr15 7482654 7483281 -78212473 + L1MC4a LINE L1 7159 7796 -12 37 39 0 0 chr15 7483281 7483332 -78212422 + AT_rich Low_complexity Low_complexity 1 51 0 7044 207 65 10 chr15 7483335 7484927 -78210827 + L1MD1 LINE L1 3270 5083 -1159 231 36 0 0 chr15 7484927 7484955 -78210799 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 7044 207 65 10 chr15 7484955 7486182 -78209572 + L1MD1 LINE L1 5083 6241 -1 273 250 26 0 chr15 7486846 7486922 -78208832 + MER5A DNA MER1_type 29 106 -83 204 226 19 0 chr15 7486981 7487034 -78208720 + MIR SINE MIR 133 186 -76 627 227 129 12 chr15 7487718 7487881 -78207873 + MER58A DNA MER1_type 42 223 -1 256 373 35 35 chr15 7487890 7488091 -78207663 - L3 LINE CR1 -920 657 457 407 302 38 19 chr15 7488099 7488258 -78207496 - MIR3 SINE MIR -15 193 32 361 278 97 36 chr15 7490028 7490339 -78205415 + L1ME4a LINE L1 5396 5726 -568 267 313 12 0 chr15 7491677 7491757 -78203997 + (TA)n Simple_repeat Simple_repeat 2 82 0 275 294 76 0 chr15 7492016 7492135 -78203619 + L1ME4a LINE L1 5991 6118 -3 2284 92 27 0 chr15 7494357 7494650 -78201104 + AluSg SINE Alu 2 302 -8 1854 150 134 28 chr15 7497814 7498201 -78197553 - MSTA LTR MaLR 0 428 1 5625 57 1 11 chr15 7498357 7499060 -78196694 + L1PA7 LINE L1 5459 6154 0 516 216 78 33 chr15 7499064 7499217 -78196537 + L1MC4 LINE L1 7587 7746 -296 284 0 28 0 chr15 7500175 7500211 -78195543 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2287 88 0 3 chr15 7500211 7500490 -78195264 - AluSg SINE Alu -32 278 1 306 294 17 25 chr15 7500997 7501116 -78194638 + MIR SINE MIR 112 229 -33 729 94 0 0 chr15 7601198 7601294 -78094460 - LOR1a LTR ERV1 -401 96 1 993 108 28 34 chr15 7601294 7601470 -78094284 - L1MB4 LINE L1 -317 5863 5689 699 151 60 12 chr15 7601477 7601612 -78094142 - L1MB4 LINE L1 -711 5463 5315 2147 108 10 3 chr15 7601612 7601909 -78093845 - AluSx SINE Alu -13 299 1 699 151 60 12 chr15 7601909 7601940 -78093814 - L1MB4 LINE L1 -859 5315 5287 2034 114 3 17 chr15 7602322 7602620 -78093134 + AluSq SINE Alu 12 305 -8 691 170 44 11 chr15 7602622 7602888 -78092866 + L1MA9 LINE L1 5942 6312 0 24 0 0 0 chr15 7602891 7602915 -78092839 + AT_rich Low_complexity Low_complexity 1 24 0 3211 203 12 9 chr15 7602999 7603683 -78092071 + L1 LINE L1 3832 4517 -1629 697 106 0 113 chr15 7603783 7603919 -78091835 + AluSg/x SINE Alu 185 305 0 1945 97 10 34 chr15 7603919 7604217 -78091537 - AluSq SINE Alu -22 291 1 271 319 60 9 chr15 7605553 7605669 -78090085 - MIR SINE MIR -56 152 31 1640 198 3 13 chr15 7605677 7605980 -78089774 + AluJo SINE Alu 1 300 -12 704 133 0 0 chr15 7605984 7606082 -78089672 - AluSg/x SINE Alu -10 302 205 21 36 0 0 chr15 7606659 7606687 -78089067 + AT_rich Low_complexity Low_complexity 1 28 0 2528 81 0 0 chr15 7608182 7608489 -78087265 - AluY SINE Alu -4 307 1 1334 128 5 0 chr15 7608490 7608678 -78087076 + Charlie3 DNA MER1_type 2518 2706 -4 1317 146 5 0 chr15 7608680 7608900 -78086854 - L1MB3 LINE L1 -259 5924 5704 2024 137 0 3 chr15 7608975 7609260 -78086494 - AluSx SINE Alu -28 284 1 3592 201 45 20 chr15 7609260 7610183 -78085571 - L1MB3 LINE L1 -724 5460 4511 2017 148 3 3 chr15 7610686 7610983 -78084771 - AluSx SINE Alu -15 297 1 32 0 0 0 chr15 7611370 7611402 -78084352 + AT_rich Low_complexity Low_complexity 1 32 0 1232 279 99 25 chr15 7611530 7612014 -78083740 + MLT1E LTR MaLR 1 520 -73 11683 28 0 0 chr15 7612114 7614179 -78081575 + L1PA3 LINE L1 4090 6155 0 2488 77 0 0 chr15 7614201 7614512 -78081242 + AluY SINE Alu 1 311 0 205 306 16 0 chr15 7615488 7615550 -78080204 - L2 LINE L2 -219 3053 2991 339 91 73 0 chr15 7615554 7615609 -78080145 + L1MB1 LINE L1 5789 5847 -342 2086 190 28 2 chr15 7615712 7616134 -78079620 - L1MB3 LINE L1 -2383 3763 3331 2161 84 7 7 chr15 7616137 7616434 -78079320 - AluY SINE Alu -10 301 5 372 22 0 0 chr15 7616445 7616490 -78079264 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 56 0 0 chr15 7616587 7616623 -78079131 + GC_rich Low_complexity Low_complexity 1 36 0 228 356 30 15 chr15 7617352 7617484 -78078270 - MLT1I LTR MaLR -40 369 236 429 277 106 0 chr15 7618276 7618417 -78077337 - L1ME LINE L1 -484 5686 5531 2012 208 59 13 chr15 7618452 7618924 -78076830 - L1PA15 LINE L1 -1411 4735 4242 * 4117 212 23 37 chr15 7618919 7620380 -78075374 + L1PA15 LINE L1 4731 6164 -1 1011 286 58 25 chr15 7620389 7621107 -78074647 - L1ME LINE L1 -694 5470 4730 1782 141 10 47 chr15 7621160 7621457 -78074297 + AluJo SINE Alu 3 288 -24 784 112 5 53 chr15 7621484 7621672 -78074082 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1983 194 29 0 chr15 7621679 7622060 -78073694 + L1MA8 LINE L1 5894 6285 -6 2198 99 41 0 chr15 7622069 7622363 -78073391 + AluSp SINE Alu 1 306 -7 2910 56 0 6 chr15 7622371 7622713 -78073041 + L1PA8 LINE L1 5825 6164 -8 3038 233 74 26 chr15 7622848 7623792 -78071962 - L1MC3 LINE L1 -8 7777 6789 521 238 105 68 chr15 7623766 7624014 -78071740 - L1ME LINE L1 -1978 4168 3912 * 1178 163 0 11 chr15 7624114 7624304 -78071450 + LOR1a LTR ERV1 310 497 0 1205 172 33 20 chr15 7624304 7624548 -78071206 + L1MB4 LINE L1 5922 6168 -12 428 306 32 24 chr15 7624631 7624879 -78070875 + L1ME LINE L1 5472 5721 -400 1818 79 126 14 chr15 7625841 7626118 -78069636 + AluY SINE Alu 1 308 -3 374 264 130 47 chr15 7626118 7626331 -78069423 - MIR SINE MIR -37 225 3 905 143 0 15 chr15 7626652 7626785 -78068969 + FLAM_C SINE Alu 2 132 -1 24 67 0 0 chr15 7627090 7627135 -78068619 + AT_rich Low_complexity Low_complexity 1 45 0 1223 159 15 0 chr15 7630247 7630442 -78065312 - AluJo SINE Alu -111 201 4 419 271 64 0 chr15 7630846 7630986 -78064768 + MER3 DNA MER1_type 1 149 -60 1633 167 51 4 chr15 7630988 7631264 -78064490 - AluJb SINE Alu -12 300 12 327 298 107 8 chr15 7631553 7631674 -78064080 + L2 LINE L2 3136 3268 -4 2309 101 0 3 chr15 7632492 7632799 -78062955 + AluSx SINE Alu 3 308 -4 903 133 7 7 chr15 7632842 7632985 -78062769 + FLAM_C SINE Alu 1 143 0 252 184 0 0 chr15 7632988 7633026 -78062728 + AluJ/F(R)AM SINE Alu 131 168 -134 229 282 0 0 chr15 7633077 7633148 -78062606 + A-rich Low_complexity Low_complexity 1 71 0 1108 182 8 29 chr15 7634430 7634672 -78061082 + L1PA14 LINE L1 5925 6161 0 1820 142 62 8 chr15 7634675 7635027 -78060727 + L1MB7 LINE L1 5579 5949 -235 233 302 0 0 chr15 7636197 7636260 -78059494 - MIR SINE MIR 0 262 200 2182 115 0 7 chr15 7636287 7636582 -78059172 + AluSx SINE Alu 1 293 -19 264 254 231 6 chr15 7636722 7636895 -78058859 - MLT1I LTR MaLR -197 212 1 377 277 17 8 chr15 7636927 7637046 -78058708 - MIR SINE MIR -122 140 21 2168 89 11 0 chr15 7637057 7637363 -78058391 - AluSp SINE Alu 0 309 1 309 183 0 0 chr15 7637367 7637427 -78058327 - L1MA8 LINE L1 0 6291 6232 2950 183 29 11 chr15 7637461 7638014 -78057740 - L1MA8 LINE L1 -47 6244 5682 193 328 0 30 chr15 7638222 7638289 -78057465 - MIR SINE MIR -192 70 6 306 337 10 10 chr15 7638447 7638548 -78057206 - MER91B DNA MER1_type 0 190 90 264 343 9 9 chr15 7638565 7638670 -78057084 - MER91B DNA MER1_type -61 129 25 318 340 125 24 chr15 7639050 7639338 -78056416 + L3 LINE CR1 733 1049 -528 31351 39 34 3 chr15 7639978 7643818 -78051936 + L1P LINE L1 1 3961 -2185 239 318 56 0 chr15 7644377 7644484 -78051270 + L1ME LINE L1 5615 5727 -394 3832 27 0 0 chr15 7644812 7645250 -78050504 - L1PA3 LINE L1 -7 6148 5711 982 9 0 0 chr15 7645250 7645357 -78050397 - U6 snRNA snRNA 0 107 1 22 0 0 0 chr15 7646918 7646940 -78048814 + AT_rich Low_complexity Low_complexity 1 22 0 2400 230 20 52 chr15 7646943 7647026 -78048728 - L1MA9 LINE L1 -38 6274 6190 474 65 0 0 chr15 7647026 7647088 -78048666 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 7647088 7647760 -78047994 - L1MA9 LINE L1 -122 6190 5543 4610 200 29 4 chr15 7647771 7648793 -78046961 - L1MA9 LINE L1 -743 5403 4356 570 209 47 16 chr15 7648902 7649093 -78046661 - L1MA9 LINE L1 -2939 3207 3011 1056 187 60 60 chr15 7649109 7649392 -78046362 + L1MD2 LINE L1 6075 6357 -2 2046 114 4 0 chr15 7649800 7650072 -78045682 - AluSg SINE Alu -8 302 30 459 228 41 0 chr15 7653504 7653627 -78042127 - L1M4 LINE L1 -1278 4868 4741 2469 129 24 62 chr15 7653659 7654109 -78041645 + Tigger2a DNA MER2_type 1 433 -1 1564 181 59 25 chr15 7654116 7654437 -78041317 + MER2 DNA MER2_type 1 332 -13 348 181 194 0 chr15 7654443 7654515 -78041239 + MER21B LTR ERV1 11 96 -767 3035 231 46 10 chr15 7654515 7655414 -78040340 - L1M4 LINE L1 -2200 3946 3016 1621 250 116 27 chr15 7655387 7656713 -78039041 - L1MEc LINE L1 -2525 3690 1740 * 341 205 111 0 chr15 7656738 7656855 -78038899 - L1MEc LINE L1 -4636 1579 1450 2372 95 3 13 chr15 7656859 7657174 -78038580 - AluSp SINE Alu -1 312 1 1017 145 0 7 chr15 7657176 7657328 -78038426 - FRAM SINE Alu -5 171 21 698 197 8 0 chr15 7657568 7657695 -78038059 - FLAM_C SINE Alu -3 130 3 954 273 48 28 chr15 7657751 7658151 -78037603 - L1MEc LINE L1 -5631 765 358 262 226 10 78 chr15 7658197 7658299 -78037455 - L1MEc LINE L1 -6013 383 289 1215 165 0 0 chr15 7658350 7658556 -78037198 - Tigger1 DNA MER2_type -420 1998 1793 1169 156 28 28 chr15 7658656 7658868 -78036886 - AluJb SINE Alu -93 219 8 405 113 141 0 chr15 7659015 7659086 -78036668 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 7659352 7659599 -78036155 - AluSg SINE Alu -63 247 1 940 95 0 0 chr15 7660112 7660228 -78035526 + AluSq/x SINE Alu 1 116 -196 851 131 0 0 chr15 7660228 7660350 -78035404 + AluSc SINE Alu 166 287 -22 1136 160 5 0 chr15 7660350 7660537 -78035217 + AluSx SINE Alu 119 306 -4 252 299 41 0 chr15 7660635 7660732 -78035022 + MIR SINE MIR 92 192 -70 2433 89 0 13 chr15 7661708 7662023 -78033731 - AluY SINE Alu 0 311 1 1622 80 40 13 chr15 7662308 7662532 -78033222 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 7662623 7662773 -78032981 - L1MD3 LINE L1 -10 7985 7808 657 189 15 8 chr15 7662773 7662905 -78032849 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 7662905 7663129 -78032625 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 7663129 7663153 -78032601 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1970 114 0 0 chr15 7663154 7663417 -78032337 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 7663417 7663563 -78032191 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 7664037 7664195 -78031559 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 7664288 7664318 -78031436 + AT_rich Low_complexity Low_complexity 1 30 0 2018 189 13 30 chr15 7664716 7665113 -78030641 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 7666003 7666143 -78029611 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 7666786 7666891 -78028863 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 7667445 7667738 -78028016 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 7667814 7668638 -78027116 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 7668856 7668994 -78026760 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 7668881 7669013 -78026741 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 7669023 7669199 -78026555 + MER58A DNA MER1_type 45 224 0 13754 102 109 17 chr15 7670011 7670219 -78025535 - L1PBa LINE L1 -3752 3110 2923 1802 150 44 7 chr15 7670219 7670512 -78025242 - AluSx SINE Alu -8 304 1 13754 102 109 17 chr15 7670512 7670523 -78025231 - L1PBa LINE L1 -3939 2923 2914 2209 66 27 40 chr15 7670523 7670824 -78024930 - AluY SINE Alu -14 297 1 13754 102 109 17 chr15 7670824 7672867 -78022887 - L1PBa LINE L1 -3948 2914 634 1114 155 26 0 chr15 7672867 7673060 -78022694 - L1PBa LINE L1 -6663 200 3 207 69 0 0 chr15 7675984 7676013 -78019741 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 969 163 0 18 chr15 7677135 7677301 -78018453 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 7677986 7678074 -78017680 - MIR SINE MIR -70 192 96 1934 140 0 39 chr15 7678125 7678433 -78017321 - AluSx SINE Alu -15 297 2 424 217 104 47 chr15 7680551 7680721 -78015033 - MIR SINE MIR -58 150 16 234 149 40 81 chr15 7680887 7680907 -78014847 - L1MC4a LINE L1 -1853 5955 5936 384 22 0 0 chr15 7680907 7680952 -78014802 + (CA)n Simple_repeat Simple_repeat 1 45 0 234 149 40 81 chr15 7680952 7681005 -78014749 - L1MC4a LINE L1 -1872 5936 5885 289 198 62 31 chr15 7682349 7682445 -78013309 - L2 LINE L2 -5 3267 3169 225 364 0 0 chr15 7682522 7682621 -78013133 - MIR SINE MIR -79 129 31 386 257 99 41 chr15 7683758 7683905 -78011849 - MIR SINE MIR -70 192 32 2358 94 7 0 chr15 7683905 7684203 -78011551 - AluY SINE Alu -11 300 1 386 257 99 41 chr15 7684203 7684226 -78011528 - MIR SINE MIR -230 32 12 1943 122 10 0 chr15 7686889 7687210 -78008544 + AluY SINE Alu 1 311 0 528 267 172 49 chr15 7687245 7687607 -78008147 + L1M4 LINE L1 2922 3312 -2834 2460 52 0 13 chr15 7687646 7687953 -78007801 - AluY SINE Alu -8 303 1 2273 80 0 3 chr15 7688386 7688697 -78007057 - AluY SINE Alu -1 310 1 252 37 8 0 chr15 7689066 7689143 -78006611 + (CA)n Simple_repeat Simple_repeat 1 34 0 1233 179 0 17 chr15 7689541 7689775 -78005979 - AluSg/x SINE Alu 0 310 81 238 288 16 114 chr15 7690147 7690315 -78005439 - L2 LINE L2 -211 3061 2910 1861 130 0 18 chr15 7690315 7690635 -78005119 + AluSx SINE Alu 6 320 0 238 288 16 114 chr15 7690635 7690649 -78005105 - L2 LINE L2 -362 2910 2896 235 149 0 21 chr15 7691143 7691190 -78004564 - MADE1 DNA Mariner -1 79 34 539 285 104 10 chr15 7691835 7692028 -78003726 - L2 LINE L2 0 3313 3103 450 189 14 0 chr15 7692077 7692151 -78003603 - MER33 DNA MER1_type -246 78 4 226 267 30 0 chr15 7692358 7692459 -78003295 - L1MEd LINE L1 -2775 3354 3251 57 39 0 0 chr15 7692475 7692553 -78003201 + AT_rich Low_complexity Low_complexity 1 78 0 360 214 22 0 chr15 7692626 7692715 -78003039 - L1MC5 LINE L1 -72 7889 7799 2077 124 7 0 chr15 7692818 7693125 -78002629 - AluSx SINE Alu -3 309 1 526 332 84 8 chr15 7693202 7693452 -78002302 + L2 LINE L2 3045 3313 0 787 169 11 56 chr15 7693948 7694126 -78001628 - MER77 LTR ERV1 -20 585 416 * 1205 165 30 121 chr15 7694125 7694422 -78001332 - MER77 LTR ERV1 -335 270 1 386 290 65 0 chr15 7694422 7694546 -78001208 - L1M4 LINE L1 -1442 5406 5275 306 342 97 15 chr15 7694816 7695012 -78000742 - L1M4 LINE L1 -2532 4316 4105 565 234 69 58 chr15 7695056 7695244 -78000510 + MLT1F LTR MaLR 163 352 -190 189 0 0 0 chr15 7695244 7695265 -78000489 + (T)n Simple_repeat Simple_repeat 1 21 0 203 191 48 0 chr15 7695649 7695691 -78000063 - MIR SINE MIR -116 146 103 357 263 98 103 chr15 7695917 7696469 -77999285 - L1M4 LINE L1 -5516 1333 785 48 72 0 0 chr15 7698133 7698230 -77997524 + GC_rich Low_complexity Low_complexity 1 97 0 28 29 0 0 chr15 7698246 7698281 -77997473 + GC_rich Low_complexity Low_complexity 1 35 0 27 35 0 0 chr15 7698483 7698512 -77997242 + GC_rich Low_complexity Low_complexity 1 29 0 649 259 33 24 chr15 7698540 7698752 -77997002 + MLT1F LTR MaLR 329 542 0 359 240 117 52 chr15 7698840 7698994 -77996760 - L1MEd LINE L1 -3316 2813 2650 467 349 72 16 chr15 7699078 7699382 -77996372 - L1MEd LINE L1 -3670 2459 2139 1349 199 55 2 chr15 7699382 7699774 -77995980 - LTR53 LTR ERVL -12 507 8 743 245 88 111 chr15 7700234 7700667 -77995087 + LTR16A LTR ERVL 8 430 -20 359 353 31 36 chr15 7700674 7700898 -77994856 - L1MEd LINE L1 -5524 595 373 325 298 101 6 chr15 7701024 7701192 -77994562 - L1MEd LINE L1 -5922 197 14 399 195 81 0 chr15 7701897 7701984 -77993770 + MLT1F1 LTR MaLR 474 567 0 1819 198 29 3 chr15 7706506 7706855 -77988899 + MLT2D LTR ERVL 1 358 -56 200 146 0 42 chr15 7706924 7706972 -77988782 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 361 102 0 0 chr15 7707002 7707051 -77988703 + MLT2D LTR ERVL 349 397 0 246 255 0 0 chr15 7707864 7707908 -77987846 + CT-rich Low_complexity Low_complexity 1 47 -4 2113 117 3 0 chr15 7707908 7708208 -77987546 - AluSx SINE Alu -11 301 1 677 325 60 39 chr15 7708275 7708743 -77987011 - L2 LINE L2 0 3313 2836 201 94 0 0 chr15 7709228 7709260 -77986494 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 399 330 53 15 chr15 7709289 7709495 -77986259 - L1M4 LINE L1 -2712 3434 3221 259 250 31 0 chr15 7709502 7709566 -77986188 - L1M4 LINE L1 -2562 3584 3519 21 0 0 0 chr15 7709579 7709600 -77986154 + AT_rich Low_complexity Low_complexity 1 21 0 1907 124 0 20 chr15 7709610 7709909 -77985845 + AluSx SINE Alu 1 293 -19 270 0 0 0 chr15 7710039 7710069 -77985685 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1868 105 4 15 chr15 7710069 7710208 -77985546 - AluSc SINE Alu -27 282 146 2178 102 0 7 chr15 7710208 7710512 -77985242 - AluSg1 SINE Alu -7 302 1 1868 105 4 15 chr15 7710512 7710639 -77985115 - AluSc SINE Alu -163 146 19 389 281 102 38 chr15 7710648 7710883 -77984871 - LTR33 LTR ERVL -8 513 264 335 250 0 81 chr15 7710955 7711079 -77984675 - LTR33 LTR ERVL -407 114 1 235 329 39 24 chr15 7711265 7711472 -77984282 + HAL1 LINE L1 1170 1379 -1128 336 305 176 11 chr15 7711554 7711741 -77984013 + L1M4 LINE L1 4478 4695 -1451 3588 262 71 42 chr15 7712482 7714043 -77981711 + L1M3c LINE L1 1 1516 -4694 1498 153 4 0 chr15 7714043 7714278 -77981476 + MER46A DNA MER2_type 1 236 0 3588 262 71 42 chr15 7714278 7715187 -77980567 + L1M3c LINE L1 1516 2398 -3812 279 0 0 0 chr15 7715187 7715218 -77980536 + (CA)n Simple_repeat Simple_repeat 2 32 0 3588 262 71 42 chr15 7715218 7715967 -77979787 + L1M3c LINE L1 2398 3076 -3134 2016 130 0 0 chr15 7715967 7716286 -77979468 + AluSx SINE Alu 1 319 0 3588 262 71 42 chr15 7716286 7716813 -77978941 + L1M3c LINE L1 3076 3586 -2624 1437 112 0 0 chr15 7716815 7717012 -77978742 + AluSx SINE Alu 1 197 -115 1080 224 0 4 chr15 7717014 7717264 -77978490 + L1M3c LINE L1 3594 3842 -2368 1379 208 89 30 chr15 7717268 7717604 -77978150 - MSTB2 LTR MaLR -78 379 24 1276 196 159 20 chr15 7717762 7718108 -77977646 + MSTD LTR MaLR 1 394 -2 22 35 0 0 chr15 7718723 7718752 -77977002 + AT_rich Low_complexity Low_complexity 1 29 0 2111 70 0 0 chr15 7719809 7720080 -77975674 - AluSc SINE Alu -9 300 30 202 259 35 17 chr15 7720083 7720141 -77975613 + MER5A DNA MER1_type 128 186 -3 331 68 0 0 chr15 7720801 7720851 -77974903 + MLT2A2 LTR ERVL 1 43 -410 533 82 0 14 chr15 7720968 7721041 -77974713 - AluSq/x SINE Alu -167 145 74 251 175 48 32 chr15 7721857 7721920 -77973834 + C-rich Low_complexity Low_complexity 2 65 0 374 206 7 174 chr15 7722010 7722109 -77973645 + MIR SINE MIR 22 87 -175 186 43 0 0 chr15 7722109 7722132 -77973622 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 374 206 7 174 chr15 7722132 7722187 -77973567 + MIR SINE MIR 87 150 -112 279 0 0 0 chr15 7722580 7722611 -77973143 + (T)n Simple_repeat Simple_repeat 1 31 0 214 197 0 30 chr15 7724209 7724275 -77971479 + G-rich Low_complexity Low_complexity 5 68 0 239 79 26 0 chr15 7725338 7725376 -77970378 + (GA)n Simple_repeat Simple_repeat 2 40 0 225 212 150 53 chr15 7726271 7726384 -77969370 + MIR3 SINE MIR 1 124 -84 457 271 17 0 chr15 7726609 7726727 -77969027 + MIR3 SINE MIR 74 193 -15 298 295 216 48 chr15 7727010 7727237 -77968517 - L3b LINE CR1 -28 1555 1291 416 253 84 45 chr15 7727277 7727431 -77968323 + MIR3 SINE MIR 37 196 -12 563 287 85 49 chr15 7727562 7727809 -77967945 + MIR SINE MIR 3 258 -4 210 37 0 0 chr15 7727933 7727960 -77967794 + (TC)n Simple_repeat Simple_repeat 2 28 0 446 272 44 7 chr15 7728270 7728406 -77967348 + MIR3 SINE MIR 61 201 -7 514 273 15 8 chr15 7728562 7728694 -77967060 + MIR SINE MIR 16 148 -114 510 283 31 13 chr15 7729181 7729340 -77966414 - MIR3 SINE MIR -27 181 20 274 365 10 0 chr15 7729363 7729459 -77966295 + L3b LINE CR1 1290 1386 -197 326 281 144 27 chr15 7729469 7729615 -77966139 - MIR3 SINE MIR -42 166 4 204 313 0 0 chr15 7730061 7730128 -77965626 + L3b LINE CR1 1326 1392 -191 4351 31 2 4 chr15 7730512 7731031 -77964723 + L1PA4 LINE L1 5638 6155 0 220 333 26 0 chr15 7731382 7731460 -77964294 + L3b LINE CR1 1319 1398 -185 1040 147 0 6 chr15 7732094 7732257 -77963497 - AluJb SINE Alu -24 288 127 180 0 0 0 chr15 7732272 7732292 -77963462 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 870 127 0 8 chr15 7732296 7732430 -77963324 - AluJb SINE Alu -179 133 1 803 260 49 29 chr15 7732490 7732736 -77963018 + MIR SINE MIR 2 252 -10 181 149 255 0 chr15 7733888 7733935 -77961819 - MIR SINE MIR -64 144 86 263 307 118 26 chr15 7734241 7734394 -77961360 + MIR SINE MIR 18 184 -78 3021 171 11 4 chr15 7734402 7734950 -77960804 - L1MB7 LINE L1 0 6184 5633 2435 90 3 0 chr15 7734963 7735263 -77960491 - AluSp SINE Alu -12 301 1 635 240 47 42 chr15 7735295 7735487 -77960267 - MIR SINE MIR -34 228 36 188 297 95 0 chr15 7735515 7735589 -77960165 + MIR SINE MIR 176 256 -6 341 287 83 19 chr15 7735755 7735912 -77959842 + MIR3 SINE MIR 42 208 0 419 348 67 10 chr15 7736573 7736789 -77958965 - MIR SINE MIR -20 242 16 579 352 9 13 chr15 7737643 7737873 -77957881 - L3 LINE CR1 -3 1574 1346 260 242 0 0 chr15 7738513 7738579 -77957175 + MIR SINE MIR 78 143 -65 923 175 0 2 chr15 7739823 7740006 -77955748 - AluJo SINE Alu -95 217 3 624 235 56 17 chr15 7740589 7740768 -77954986 - MIR SINE MIR -54 208 23 246 211 158 0 chr15 7741368 7741444 -77954310 + MIR SINE MIR 113 200 -62 217 267 174 0 chr15 7741725 7741811 -77953943 + L2 LINE L2 3175 3275 -38 340 316 171 1 chr15 7742628 7742847 -77952907 - MIR SINE MIR -6 256 6 1517 89 171 4 chr15 7742925 7743182 -77952572 + AluJo SINE Alu 1 300 -2 248 299 35 56 chr15 7745078 7745222 -77950532 + MIR3 SINE MIR 63 203 -5 1923 171 0 3 chr15 7746447 7746756 -77948998 + AluJo SINE Alu 1 308 -4 338 228 41 86 chr15 7748027 7748207 -77947547 + MIR SINE MIR 41 219 -43 355 262 27 86 chr15 7748370 7748557 -77947197 + MER5A DNA MER1_type 7 182 -7 331 243 97 10 chr15 7748997 7749100 -77946654 + MIR3 SINE MIR 11 122 -86 330 45 0 0 chr15 7749623 7749667 -77946087 + (CA)n Simple_repeat Simple_repeat 2 45 0 1720 113 12 4 chr15 7749910 7750157 -77945597 + AluSx SINE Alu 52 300 -12 2200 133 113 18 chr15 7750454 7750845 -77944909 - MSTA LTR MaLR 0 428 1 251 318 182 10 chr15 7750854 7751150 -77944604 - L2 LINE L2 -348 2966 2620 221 346 37 21 chr15 7751330 7751518 -77944236 - L2 LINE L2 -1320 1994 1804 422 157 12 0 chr15 7751520 7751603 -77944151 + (TG)n Simple_repeat Simple_repeat 1 84 0 214 293 73 49 chr15 7752075 7752198 -77943556 - L2 LINE L2 -2141 1173 1048 428 276 285 12 chr15 7752278 7752706 -77943048 - L2 LINE L2 -340 2974 2430 532 328 48 20 chr15 7753047 7753464 -77942290 + L2 LINE L2 2654 3083 -189 336 48 0 0 chr15 7753591 7753633 -77942121 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 301 336 132 7 chr15 7754092 7754315 -77941439 - MIR SINE MIR -6 256 4 3599 165 60 172 chr15 7754432 7754674 -77941080 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 7754674 7754699 -77941055 + (CA)n Simple_repeat Simple_repeat 2 26 0 3599 165 60 172 chr15 7754699 7754722 -77941032 + L1MB7 LINE L1 4255 4279 -1899 2297 129 0 0 chr15 7754722 7755033 -77940721 + AluSx SINE Alu 1 311 -1 3599 165 60 172 chr15 7755033 7755427 -77940327 + L1MB7 LINE L1 4279 4716 -1462 2004 148 7 0 chr15 7755427 7755731 -77940023 + AluJb SINE Alu 1 306 -6 3599 165 60 172 chr15 7755731 7756061 -77939693 + L1MB7 LINE L1 4716 5081 -1097 1176 190 5 0 chr15 7756061 7756256 -77939498 + AluJb SINE Alu 96 291 -21 3599 165 60 172 chr15 7756256 7756460 -77939294 + L1MB7 LINE L1 5081 5154 -1024 2291 111 0 10 chr15 7756460 7756766 -77938988 + AluSq SINE Alu 1 303 -10 3599 165 60 172 chr15 7756766 7757078 -77938676 + L1MB7 LINE L1 5154 5499 -679 * 5702 33 0 0 chr15 7757075 7757775 -77937979 - L1PA4 LINE L1 -1441 4705 4006 7316 28 3 1 chr15 7757775 7759203 -77936551 + L1PA4 LINE L1 4702 6155 0 2975 137 61 78 chr15 7759205 7759509 -77936245 + L1MB7 LINE L1 5494 5802 -382 1910 153 7 0 chr15 7759509 7759803 -77935951 + AluJo SINE Alu 1 296 -16 2975 137 61 78 chr15 7759803 7760201 -77935553 + L1MB7 LINE L1 5802 6184 0 183 219 49 0 chr15 7760810 7760851 -77934903 - L2 LINE L2 -6 3307 3265 390 243 29 10 chr15 7761027 7761145 -77934609 + L1ME LINE L1 5714 5823 -304 664 293 60 0 chr15 7761742 7761957 -77933797 + MIR SINE MIR 5 232 -30 313 183 11 53 chr15 7761969 7762062 -77933692 - FRAM SINE Alu -68 98 41 238 189 0 0 chr15 7762089 7762126 -77933628 - Alu SINE Alu -12 121 85 1627 175 3 21 chr15 7763328 7763613 -77932141 + AluJo SINE Alu 10 289 -23 292 251 24 20 chr15 7763665 7763766 -77931988 + MIR3 SINE MIR 69 170 -38 348 24 0 0 chr15 7765775 7765816 -77929938 + (CA)n Simple_repeat Simple_repeat 1 41 0 1026 217 90 32 chr15 7868306 7868583 -77827171 - MLT1E1 LTR MaLR -9 584 292 618 221 231 5 chr15 7868596 7868791 -77826963 - MER70A LTR ERVL -1 471 233 2155 181 98 65 chr15 7868891 7869139 -77826615 - L1MDa LINE L1 -4423 2117 1879 2196 136 3 3 chr15 7869139 7869441 -77826313 + AluSx SINE Alu 1 302 -10 2155 181 98 65 chr15 7869441 7869721 -77826033 - L1MDa LINE L1 -4661 1879 1564 2495 58 0 23 chr15 7869721 7870030 -77825724 - AluY SINE Alu -9 302 1 2155 181 98 65 chr15 7870030 7870113 -77825641 - L1MDa LINE L1 -4976 1564 1485 1994 183 68 8 chr15 7870859 7871257 -77824497 + MER95 LTR ERV 10 431 0 1537 254 81 22 chr15 7871697 7872242 -77823512 + L1ME3A LINE L1 5052 5563 -607 1144 210 75 42 chr15 7872242 7872575 -77823179 - MER2 DNA MER2_type 0 344 1 1537 254 81 22 chr15 7872575 7872675 -77823079 + L1ME3A LINE L1 5563 5656 -514 1359 205 27 102 chr15 7872675 7873079 -77822675 + MLT1A2 LTR MaLR 1 374 0 1537 254 81 22 chr15 7873079 7873262 -77822492 + L1ME3A LINE L1 5656 5924 -246 352 178 55 27 chr15 7873398 7873471 -77822283 - MER70A LTR ERVL -383 89 15 1448 167 42 14 chr15 7873671 7873958 -77821796 - MLT1E1 LTR MaLR -359 295 1 2180 141 0 0 chr15 7874158 7874462 -77821292 - AluSx SINE Alu -8 304 1 804 228 61 88 chr15 7877384 7877713 -77818041 + MLT2D LTR ERVL 47 366 -48 3386 109 56 8 chr15 7877790 7878323 -77817431 - Tigger3(Golem) DNA MER2_type 0 3029 2471 646 293 78 57 chr15 7878437 7878949 -77816805 - HAL1b LINE L1 -809 539 17 1780 152 4 4 chr15 7880151 7880427 -77815327 - AluJb SINE Alu -36 276 1 1801 199 11 16 chr15 7881693 7882060 -77813694 - MLT1A1 LTR MaLR 0 365 1 2360 265 50 4 chr15 7882210 7882946 -77812808 - L1M4 LINE L1 -3013 3133 2364 2635 175 49 35 chr15 7883058 7883110 -77812644 + L1MB7 LINE L1 5437 5487 -697 2532 60 0 3 chr15 7883110 7883408 -77812346 + AluY SINE Alu 1 297 -14 2635 175 49 35 chr15 7883408 7883931 -77811823 + L1MB7 LINE L1 5487 6020 -164 625 178 6 89 chr15 7883958 7884138 -77811616 - FRAM SINE Alu -11 165 1 522 220 78 0 chr15 7884140 7884281 -77811473 + L1MB8 LINE L1 6022 6173 -5 289 186 0 36 chr15 7884368 7884435 -77811319 - L1M3 LINE L1 -580 5603 5541 415 329 72 50 chr15 7884439 7884856 -77810898 + HAL1b LINE L1 351 776 -572 2262 114 0 0 chr15 7885170 7885467 -77810287 + AluSx SINE Alu 3 299 -13 279 276 9 9 chr15 7885524 7885629 -77810125 + L1 LINE L1 2148 2252 -3894 350 297 84 88 chr15 7885750 7886013 -77809741 + L1 LINE L1 2270 2531 -3615 2311 91 0 0 chr15 7886045 7886341 -77809413 - AluY SINE Alu -15 296 1 321 232 0 14 chr15 7886493 7886562 -77809192 - MLT2C2 LTR ERVL -396 68 1 9573 160 50 56 chr15 7886562 7888222 -77807532 - ERVL-C2 LTR ERVL -8 5756 4108 2153 77 0 3 chr15 7888222 7888508 -77807246 - AluSg SINE Alu -25 285 1 9573 160 50 56 chr15 7888508 7888781 -77806973 - ERVL-C2 LTR ERVL -1656 4108 3835 207 0 0 0 chr15 7888787 7888810 -77806944 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 227 0 0 chr15 7888815 7888903 -77806851 + G-rich Low_complexity Low_complexity 1 88 0 1620 197 49 12 chr15 7888903 7889248 -77806506 - MLT2D LTR ERVL -36 378 21 483 162 20 10 chr15 7889256 7889355 -77806399 - L1MEc LINE L1 -2352 3863 3764 * 1470 243 33 27 chr15 7889354 7889934 -77805820 - L1M4 LINE L1 -2985 3161 2110 1137 268 22 8 chr15 7890041 7890407 -77805347 - L1MEc LINE L1 -3353 2862 2492 286 235 25 12 chr15 7890436 7890517 -77805237 - L1MEc LINE L1 -4699 1697 1616 1279 302 66 30 chr15 7890605 7891586 -77804168 - L1MEd LINE L1 -2990 3139 2123 1374 281 112 35 chr15 7891932 7893249 -77802505 - L1MEd LINE L1 -4584 1726 276 374 196 59 23 chr15 7893911 7894083 -77801671 - MER5C DNA MER1_type 0 324 57 920 268 33 0 chr15 7894316 7894559 -77801195 - MIR SINE MIR -4 258 8 237 238 71 40 chr15 7894632 7894758 -77800996 + MER117 DNA MER1_type 18 147 -50 30700 93 15 7 chr15 7895119 7899751 -77796003 - L1P3 LINE L1 -557 5597 928 307 277 90 17 chr15 7899851 7900060 -77795694 - L1MC4 LINE L1 -135 7739 7462 351 182 0 15 chr15 7900988 7901054 -77794700 + MIR SINE MIR 87 151 -111 341 314 116 25 chr15 7901114 7901356 -77794398 - MLT1L LTR MaLR -38 577 314 225 224 134 67 chr15 7901435 7901614 -77794140 - MLT1L LTR MaLR -424 191 1 1843 149 53 0 chr15 7902471 7902906 -77792848 - L1MA4A LINE L1 -23 6280 5762 527 196 39 73 chr15 7903321 7903500 -77792254 - HAL1 LINE L1 -662 1845 1673 2415 64 0 13 chr15 7903538 7903849 -77791905 + AluY SINE Alu 1 307 -4 944 186 54 50 chr15 7903928 7904030 -77791724 - L1ME LINE L1 -450 6108 6008 2088 121 55 28 chr15 7904030 7904394 -77791360 - THE1C LTR MaLR -1 374 1 944 186 54 50 chr15 7904394 7904512 -77791242 - L1ME LINE L1 -550 6008 5887 2544 213 53 13 chr15 7904512 7904529 -77791225 - L1ME LINE L1 -1801 4739 4724 1238 218 0 36 chr15 7904529 7904777 -77790977 - MER8 DNA MER2_type 0 239 1 2544 213 53 13 chr15 7904777 7905435 -77790319 - L1ME LINE L1 -1816 4724 4037 940 198 37 29 chr15 7905466 7905708 -77790046 - L1ME LINE L1 -4150 2390 2147 7850 105 4 3 chr15 7905808 7906868 -77788886 - L1P3 LINE L1 -5394 1067 7 210 148 93 0 chr15 7907135 7907189 -77788565 + L2 LINE L2 2475 2533 -781 2346 240 45 22 chr15 7907526 7907848 -77787906 + L1ME3 LINE L1 4882 5195 -969 1666 190 0 10 chr15 7907848 7908153 -77787601 + AluJb SINE Alu 1 302 -10 2346 240 45 22 chr15 7908153 7908875 -77786879 + L1ME3 LINE L1 5195 5942 -222 1822 213 81 86 chr15 7908880 7909482 -77786272 + MLT1E2 LTR MaLR 1 600 -25 343 213 75 94 chr15 7909496 7909656 -77786098 + L1ME3 LINE L1 5991 6147 -15 * 648 160 10 2 chr15 7909640 7909779 -77785975 + L1MA4 LINE L1 5791 5930 -244 285 306 62 50 chr15 7909790 7910079 -77785675 + L2 LINE L2 2723 3077 -236 1043 210 63 60 chr15 7911514 7911832 -77783922 + LTR55 LTR ERV 1 319 -229 259 196 0 0 chr15 7911832 7911878 -77783876 - MLT2C1 LTR ERVL 0 397 352 2340 139 106 24 chr15 7911890 7912176 -77783578 + Tigger3b DNA MER2_type 1 262 -2766 549 80 0 0 chr15 7912176 7912251 -77783503 + (TA)n Simple_repeat Simple_repeat 1 75 0 2324 79 7 0 chr15 7912251 7912555 -77783199 - AluY SINE Alu -5 306 1 2340 139 106 24 chr15 7912555 7912690 -77783064 + Tigger3b DNA MER2_type 261 458 -773 9232 197 11 14 chr15 7912790 7914303 -77781451 - L1 LINE L1 -1862 4284 2768 2438 52 0 26 chr15 7914303 7914613 -77781141 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 7914613 7914638 -77781116 + (TA)n Simple_repeat Simple_repeat 1 25 0 9232 197 11 14 chr15 7914638 7915099 -77780655 - L1 LINE L1 -3376 2770 2315 2025 209 111 3 chr15 7915093 7916499 -77779255 - L1PBa LINE L1 -5159 1704 2 * 331 200 0 0 chr15 7916556 7916611 -77779143 + Tigger5 DNA MER2_type 1 55 -2268 385 203 0 0 chr15 7916613 7916682 -77779072 + Tigger5 DNA MER2_type 2255 2323 0 364 253 81 58 chr15 7916797 7916971 -77778783 - L1ME LINE L1 -5077 993 816 2202 92 14 0 chr15 7916971 7917265 -77778489 - AluSc SINE Alu -11 298 1 21 0 0 0 chr15 7917286 7917307 -77778447 + AT_rich Low_complexity Low_complexity 1 21 0 1734 140 4 0 chr15 7917312 7917569 -77778185 - Tigger3(Golem) DNA MER2_type -1 3028 2771 544 178 0 0 chr15 7917566 7917656 -77778098 - Tigger3(Golem) DNA MER2_type -2887 142 53 * 464 283 94 11 chr15 7918211 7918391 -77777363 - LTR33 LTR ERVL -322 199 5 1936 150 17 0 chr15 7919593 7919893 -77775861 + AluJb SINE Alu 1 305 -7 267 313 61 17 chr15 7921388 7921503 -77774251 - L2 LINE L2 -22 3291 3172 936 279 89 81 chr15 7921669 7922642 -77773112 - L2 LINE L2 -420 2894 1914 229 271 144 8 chr15 7923118 7923236 -77772518 + MIR SINE MIR 117 250 -12 2506 139 50 5 chr15 7923409 7923812 -77771942 - MSTB LTR MaLR -5 421 1 202 285 112 89 chr15 7925080 7925427 -77770327 - L2 LINE L2 -82 3190 2836 251 232 73 12 chr15 7927145 7927227 -77768527 + L2 LINE L2 2683 2769 -545 261 247 32 75 chr15 7927494 7927587 -77768167 + L2 LINE L2 3183 3271 -42 273 98 0 0 chr15 7927592 7927633 -77768121 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 284 280 42 17 chr15 7931258 7931376 -77764378 + LTR33 LTR ERVL 401 521 0 356 200 75 13 chr15 7932136 7932216 -77763538 - MIR SINE MIR -56 152 67 232 171 45 11 chr15 7932875 7932963 -77762791 + (CA)n Simple_repeat Simple_repeat 2 92 0 301 270 35 26 chr15 7932966 7933081 -77762673 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 188 178 0 22 chr15 7933082 7933127 -77762627 + (CA)n Simple_repeat Simple_repeat 1 44 0 449 251 34 23 chr15 7933185 7933360 -77762394 + (CATA)n Simple_repeat Simple_repeat 4 180 0 201 259 0 28 chr15 7933372 7933480 -77762274 + (CA)n Simple_repeat Simple_repeat 1 105 0 234 116 0 0 chr15 7935389 7935432 -77760322 + (CA)n Simple_repeat Simple_repeat 1 43 0 370 173 95 19 chr15 7935640 7935746 -77760008 - FLAM SINE Alu -2 131 66 1485 258 37 52 chr15 7935752 7936314 -77759440 + MER74B LTR ERVL 69 622 0 875 199 86 0 chr15 7936314 7936500 -77759254 - MER58A DNA MER1_type -4 220 19 326 349 98 34 chr15 7937770 7938005 -77757749 + HAL1 LINE L1 1455 1704 -803 497 309 19 40 chr15 7938327 7938703 -77757051 + L1ME4a LINE L1 2155 2522 -3624 355 315 59 31 chr15 7938825 7939190 -77756564 + L1ME4a LINE L1 4100 4616 -1530 23 33 0 0 chr15 7939499 7939529 -77756225 + AT_rich Low_complexity Low_complexity 1 30 0 2581 69 3 0 chr15 7939531 7939835 -77755919 + AluY SINE Alu 1 305 -6 225 248 28 9 chr15 7940032 7940141 -77755613 + L1ME4a LINE L1 5283 5393 -753 2694 113 23 57 chr15 7940194 7940635 -77755119 + MSTB LTR MaLR 1 426 0 9022 152 38 15 chr15 7940653 7942230 -77753524 + MSTB-int LTR MaLR 37 1650 -1 2589 160 9 21 chr15 7942231 7942662 -77753092 + MSTB LTR MaLR 1 426 0 302 291 92 78 chr15 7942727 7943033 -77752721 + L1ME4a LINE L1 5578 5887 -234 290 249 55 73 chr15 7943081 7943246 -77752508 + L1ME4a LINE L1 5960 6121 0 397 349 62 19 chr15 7943248 7943506 -77752248 + L3 LINE CR1 1110 1378 -199 411 21 0 0 chr15 7944059 7944107 -77751647 + (CA)n Simple_repeat Simple_repeat 1 48 0 1195 123 0 27 chr15 7944581 7944800 -77750954 + L1MA4 LINE L1 6078 6290 -10 26 0 0 0 chr15 7944825 7944851 -77750903 + AT_rich Low_complexity Low_complexity 1 26 0 403 363 71 8 chr15 7945064 7945304 -77750450 + MIR SINE MIR 8 262 0 2137 155 0 0 chr15 7945604 7945914 -77749840 + AluSx SINE Alu 1 310 -2 534 357 32 47 chr15 7946022 7946624 -77749130 + L1MEc LINE L1 1948 2489 -3726 1856 193 22 29 chr15 7946635 7947044 -77748710 + MER74A LTR ERVL 1 406 -152 381 239 101 14 chr15 7947213 7947351 -77748403 + MER74B LTR ERVL 473 622 0 842 293 53 20 chr15 7947491 7947846 -77747908 - MLT1I LTR MaLR -33 376 10 2151 109 25 41 chr15 7948001 7948721 -77747033 + MER4A LTR ERV1 1 779 0 4563 147 17 40 chr15 7948784 7949660 -77746094 + MER4D LTR ERV1 2 857 -46 8000 104 24 36 chr15 7949781 7951037 -77744717 - THE1B-int LTR MaLR -336 1244 4 2385 125 25 0 chr15 7951037 7951390 -77744364 - THE1B LTR MaLR -2 362 1 2174 128 31 31 chr15 7952025 7952383 -77743371 + THE1B LTR MaLR 1 358 -6 235 259 0 0 chr15 7954329 7954383 -77741371 + (TA)n Simple_repeat Simple_repeat 1 54 0 343 299 84 13 chr15 7955066 7955220 -77740534 + MIR3 SINE MIR 7 171 -37 1287 291 217 15 chr15 7955375 7955964 -77739790 + L2 LINE L2 1976 2445 -868 2367 82 3 16 chr15 7955964 7956268 -77739486 + AluSg SINE Alu 1 300 -10 1287 291 217 15 chr15 7956268 7956591 -77739163 + L2 LINE L2 2445 3068 -245 824 262 32 41 chr15 7956591 7956935 -77738819 + L1ME3A LINE L1 5611 5951 -219 349 207 157 41 chr15 7957235 7957412 -77738342 - MLT1J1 LTR MaLR -51 460 207 326 306 19 0 chr15 7957608 7957716 -77738038 - MLT1J2 LTR MaLR -340 110 1 416 305 67 63 chr15 7957722 7957896 -77737858 + L1ME4a LINE L1 5877 6054 -67 1806 158 10 29 chr15 7957896 7958206 -77737548 - AluJb SINE Alu -4 308 5 416 305 67 63 chr15 7958206 7958254 -77737500 + L1ME4a LINE L1 6054 6100 -21 1913 178 138 10 chr15 7958793 7959198 -77736556 + LTR32 LTR ERVL 15 471 0 2139 128 20 0 chr15 7959643 7959940 -77735814 + AluSx SINE Alu 1 303 -9 2281 58 3 88 chr15 7959942 7960272 -77735482 + AluY SINE Alu 1 302 -9 213 94 0 0 chr15 7960463 7960495 -77735259 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1724 267 57 25 chr15 7960751 7961473 -77734281 + L1MC3 LINE L1 5856 6600 -1185 1565 181 45 3 chr15 7961532 7961846 -77733908 + MSTB LTR MaLR 98 424 -2 720 205 19 0 chr15 7961849 7962005 -77733749 + L1MC3 LINE L1 6616 6774 -1011 363 288 107 0 chr15 7963104 7963281 -77732473 - L1MC/D LINE L1 -2010 5798 5603 573 262 48 32 chr15 7963737 7964066 -77731688 + L1M4b LINE L1 -254 119 -6165 1493 137 46 76 chr15 7964123 7964452 -77731302 + MER2 DNA MER2_type 25 343 -2 1518 185 82 142 chr15 7964455 7965686 -77730068 + L1M4b LINE L1 377 1478 -4906 195 42 0 0 chr15 7965686 7965710 -77730044 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1518 185 82 142 chr15 7965710 7965821 -77729933 + L1M4b LINE L1 1478 1594 -4790 2397 98 0 0 chr15 7965823 7966119 -77729635 + AluSx SINE Alu 1 296 -16 260 210 0 0 chr15 7967767 7967829 -77727925 + A-rich Low_complexity Low_complexity 1 62 0 829 155 8 0 chr15 7967866 7967995 -77727759 + FLAM_C SINE Alu 1 130 -13 344 249 38 121 chr15 7968003 7968349 -77727405 + L1M4b LINE L1 1645 2112 -4451 367 336 28 65 chr15 7968379 7968626 -77727128 + L1MEc LINE L1 1734 1971 -4425 197 161 0 0 chr15 7969564 7969595 -77726159 - L2 LINE L2 -18 3254 3224 197 246 92 0 chr15 7969597 7969662 -77726092 - MIR SINE MIR -92 170 100 1771 197 101 5 chr15 7969662 7970099 -77725655 - MLT2B1 LTR ERVL 0 520 42 3774 148 39 0 chr15 7970945 7971592 -77724162 - L1PB4 LINE L1 -1 6155 5484 5513 196 12 11 chr15 7971592 7972794 -77722960 - L1PB4 LINE L1 -1024 5122 3919 1166 139 0 0 chr15 7972790 7972984 -77722770 + L1PB4 LINE L1 3725 3918 -2228 * 328 278 167 17 chr15 7975442 7975622 -77720132 + L2 LINE L2 3014 3220 -93 182 71 0 71 chr15 7979092 7979134 -77716620 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 281 129 0 32 chr15 7979637 7979699 -77716055 + (CCG)n Simple_repeat Simple_repeat 3 62 0 42 71 0 0 chr15 7979781 7979865 -77715889 + GC_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr15 7980041 7980062 -77715692 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 7980090 7980146 -77715608 + GC_rich Low_complexity Low_complexity 1 56 0 2393 101 0 3 chr15 7980562 7980869 -77714885 + AluSx SINE Alu 1 306 -6 377 322 55 39 chr15 7980869 7981113 -77714641 + L1MEc LINE L1 2728 2978 -3237 365 214 43 43 chr15 7981812 7981929 -77713825 + MLT1G1 LTR MaLR 477 593 -2 242 237 53 79 chr15 7982018 7982132 -77713622 + MIR SINE MIR 134 244 -18 1599 137 63 3 chr15 7982277 7982562 -77713192 + AluJo SINE Alu 1 302 -10 1885 68 129 4 chr15 7982563 7982827 -77712927 + AluSg1 SINE Alu 1 297 -12 1416 104 62 78 chr15 7983771 7983820 -77711934 + L1MA8 LINE L1 5988 6036 -255 2526 62 7 0 chr15 7983820 7984124 -77711630 + AluSp SINE Alu 1 306 -7 1416 104 62 78 chr15 7984124 7984383 -77711371 + L1MA8 LINE L1 6036 6291 0 1174 182 146 3 chr15 7984991 7985323 -77710431 - MER47B DNA MER2_type -1 417 1 181 158 70 70 chr15 7985548 7985605 -77710149 + MIR SINE MIR 19 75 -133 295 286 107 58 chr15 7985704 7985910 -77709844 + MLT1K LTR MaLR 329 544 -44 201 113 16 32 chr15 7986367 7986429 -77709325 + (CGCGG)n Simple_repeat Simple_repeat 4 64 0 25 0 0 0 chr15 7988612 7988637 -77707117 + AT_rich Low_complexity Low_complexity 1 25 0 1496 226 54 41 chr15 7991566 7992030 -77703724 + L2 LINE L2 2843 3312 -1 1980 89 25 70 chr15 7994479 7994806 -77700948 - AluSx SINE Alu 0 312 1 2164 122 44 33 chr15 7994883 7995243 -77700511 - THE1B LTR MaLR 0 364 1 249 325 13 13 chr15 7995668 7995745 -77700009 - MIR SINE MIR -185 77 1 235 241 19 0 chr15 7996125 7996179 -77699575 + MIR SINE MIR 87 141 -67 619 273 171 24 chr15 7996238 7996572 -77699182 - LTR50 LTR ERVL -26 769 387 2847 276 86 56 chr15 7996761 7998288 -77697466 - ERVL LTR ERVL -321 5443 3871 1044 159 17 82 chr15 7998291 7998399 -77697355 - MER20 DNA MER1_type 0 219 132 2774 175 35 14 chr15 7998399 7998908 -77696846 + MLT2B1 LTR ERVL 1 520 0 1044 159 17 82 chr15 7998908 7999032 -77696722 - MER20 DNA MER1_type -87 132 2 1161 336 90 5 chr15 7999048 7999690 -77696064 - ERVL LTR ERVL -1904 3860 3164 4958 123 54 26 chr15 7999943 8000991 -77694763 + MER52C LTR ERV1 1 1278 0 1512 301 62 53 chr15 8000998 8001271 -77694483 - ERVL LTR ERVL -2944 2820 2551 2173 111 0 0 chr15 8001271 8001569 -77694185 + AluSx SINE Alu 1 298 -14 1512 301 62 53 chr15 8001569 8002157 -77693597 - ERVL LTR ERVL -3213 2551 1952 1724 249 89 31 chr15 8002455 8002930 -77692824 - L1ME2 LINE L1 -9 6155 5638 1400 118 107 48 chr15 8002930 8003075 -77692679 + AluSx SINE Alu 1 136 -176 2142 89 3 3 chr15 8003075 8003367 -77692387 + AluSg1 SINE Alu 1 292 -17 1400 118 107 48 chr15 8003367 8003510 -77692244 + AluSx SINE Alu 136 306 -6 1724 249 89 31 chr15 8003510 8003621 -77692133 - L1ME2 LINE L1 -526 5638 5535 194 310 70 10 chr15 8004318 8004418 -77691336 - L2 LINE L2 -3 3269 3164 212 284 91 11 chr15 8004603 8004691 -77691063 - MIR SINE MIR -140 122 28 2767 160 67 24 chr15 8005841 8006355 -77689399 - MER21A LTR ERV1 0 931 272 2536 55 0 0 chr15 8006355 8006664 -77689090 - AluY SINE Alu -2 309 1 2767 160 67 24 chr15 8006664 8006949 -77688805 - MER21A LTR ERV1 -659 272 1 23 0 0 0 chr15 8007090 8007113 -77688641 + AT_rich Low_complexity Low_complexity 1 23 0 1644 153 122 68 chr15 8007463 8007874 -77687880 - LTR12 LTR ERV1 -229 485 53 267 231 0 0 chr15 8007874 8007926 -77687828 - LTR30 LTR ERV1 -670 52 1 1546 262 53 31 chr15 8008007 8008375 -77687379 - LTR19-int LTR ERV1 -3744 3152 2769 2264 63 0 13 chr15 8008375 8008674 -77687080 - AluY SINE Alu -15 296 2 1546 262 53 31 chr15 8008674 8008794 -77686960 - LTR19-int LTR ERV1 -4127 2769 2653 622 148 142 6 chr15 8008984 8009153 -77686601 - LTR19-int LTR ERV1 -2321 3265 3074 2184 88 0 7 chr15 8009316 8009611 -77686143 - AluSc SINE Alu -16 293 1 305 273 118 0 chr15 8009679 8009789 -77685965 + MER94 DNA DNA 12 134 0 4260 148 19 3 chr15 8010523 8011191 -77684563 + MER54B LTR ERVL 4 682 -111 797 232 0 4 chr15 8011736 8012018 -77683736 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 588 212 11 6 chr15 8012043 8012222 -77683532 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 250 286 18 0 chr15 8012289 8012345 -77683409 + L2 LINE L2 3246 3302 -11 385 230 147 9 chr15 8013163 8013340 -77682414 + L1MC4a LINE L1 6441 6604 -1204 1567 238 86 52 chr15 8013394 8013452 -77682302 + L1MC4 LINE L1 6870 6925 -1117 1920 149 10 0 chr15 8013452 8013761 -77681993 + AluJo SINE Alu 1 312 0 1567 238 86 52 chr15 8013761 8014548 -77681206 + L1MC4 LINE L1 6925 7902 -140 1372 105 0 11 chr15 8014632 8014822 -77680932 + AluSq SINE Alu 1 188 -125 4065 115 3 2 chr15 8014823 8015413 -77680341 + LTR10C LTR ERV1 1 591 0 563 332 103 19 chr15 8015415 8015677 -77680077 + LTR10C-int LTR ERV1 6 289 -6360 271 200 93 53 chr15 8015940 8016015 -77679739 + LTR10C-int LTR ERV1 528 605 -6044 320 209 55 66 chr15 8016016 8016107 -77679647 + L1MC4 LINE L1 6613 6702 -1340 208 175 25 0 chr15 8016108 8016148 -77679606 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 322 253 0 74 chr15 8016157 8016252 -77679502 + L1MC4 LINE L1 6615 6702 -1340 312 286 0 33 chr15 8016273 8016364 -77679390 + L1MC4 LINE L1 6615 6702 -1340 308 300 22 11 chr15 8016396 8016486 -77679268 + L1MC4 LINE L1 6614 6704 -1338 320 217 22 60 chr15 8016499 8016640 -77679114 + L1MC4 LINE L1 6558 6646 -1139 307 235 0 98 chr15 8016588 8016690 -77679064 - L1MC4 LINE L1 -1339 6703 6612 * 312 242 33 55 chr15 8016655 8016746 -77679008 + L1MC4 LINE L1 6614 6702 -1340 301 258 11 54 chr15 8016753 8016846 -77678908 + L1MC4 LINE L1 6614 6702 -1340 294 148 0 37 chr15 8016847 8016928 -77678826 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 340 223 32 64 chr15 8016928 8017022 -77678732 + L1MC4 LINE L1 6614 6704 -1338 224 301 0 0 chr15 8017484 8017557 -77678197 + A-rich Low_complexity Low_complexity 1 73 0 328 120 189 74 chr15 8017570 8017745 -77678009 + HERVKC4 LTR ERVK 2609 2803 -2459 * 2132 131 64 43 chr15 8017635 8017916 -77677838 + Harlequin LTR ERV1 1896 2170 -4726 2141 96 3 3 chr15 8017916 8018208 -77677546 + AluY SINE Alu 1 292 -19 2132 131 64 43 chr15 8018208 8018489 -77677265 + Harlequin LTR ERV1 2170 2470 -4426 473 306 19 0 chr15 8018716 8018873 -77676881 + L1MCc LINE L1 264 423 -6000 268 288 14 0 chr15 8018977 8019050 -77676704 - L1MCc LINE L1 -5507 916 843 2573 253 59 49 chr15 8019067 8020396 -77675358 + L1MCc LINE L1 1192 2507 -4615 2112 111 3 16 chr15 8020396 8020703 -77675051 + AluSx SINE Alu 1 303 -9 2573 253 59 49 chr15 8020703 8021031 -77674723 + L1MCc LINE L1 2507 2830 -4292 1470 129 37 0 chr15 8021031 8021248 -77674506 + AluSx SINE Alu 1 225 -87 2573 253 59 49 chr15 8021248 8021348 -77674406 + L1MCc LINE L1 2830 3177 -3945 1987 132 3 3 chr15 8022125 8022420 -77673334 - AluSx SINE Alu -17 295 1 223 232 214 36 chr15 8022700 8022812 -77672942 + MIR SINE MIR 119 250 -12 888 256 156 14 chr15 8022965 8023325 -77672429 + MER20B DNA MER1_type 350 760 -23 215 111 56 0 chr15 8025872 8025908 -77669846 - MER91B DNA MER1_type -129 61 24 777 245 21 21 chr15 8026015 8026203 -77669551 - MER58A DNA MER1_type 0 224 37 274 364 26 7 chr15 8027932 8028086 -77667668 + MIR SINE MIR 92 248 -14 480 113 0 113 chr15 8029738 8029844 -77665910 - AluSg/x SINE Alu -1 308 215 3611 130 37 0 chr15 8029844 8030414 -77665340 - LTR10C LTR ERV1 0 591 1 2642 303 65 28 chr15 8030459 8030619 -77665135 - HERVI LTR ERV1 -79 7706 7553 2317 52 38 0 chr15 8030619 8030908 -77664846 - AluY SINE Alu -11 300 1 2642 303 65 28 chr15 8030908 8031936 -77663818 - HERVI LTR ERV1 -232 7553 6474 4578 146 21 8 chr15 8032039 8032697 -77663057 + L1P LINE L1 3917 4588 -1558 2760 93 3 11 chr15 8032697 8033064 -77662690 + THE1B LTR MaLR 1 364 0 4578 146 21 8 chr15 8033064 8033181 -77662573 + L1P LINE L1 4588 4702 -1444 360 346 23 8 chr15 8033299 8033429 -77662325 + GA-rich Low_complexity Low_complexity 5 136 0 1096 100 0 17 chr15 8033430 8033610 -77662144 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 11608 24 1 1 chr15 8034535 8035886 -77659868 + L1P LINE L1 3537 4888 -1258 6506 103 1 15 chr15 8035986 8036989 -77658765 + L1P LINE L1 2529 3517 -2629 2506 258 74 14 chr15 8038701 8039638 -77656116 + L1M1 LINE L1 2262 3254 -4311 526 157 11 0 chr15 8039632 8039721 -77656033 + L1PBa LINE L1 1 90 -6773 * 289 343 124 29 chr15 8039832 8040243 -77655511 - L2 LINE L2 -19 3253 2804 238 374 131 14 chr15 8040361 8040711 -77655043 - L2 LINE L2 -645 2669 2279 1170 113 0 6 chr15 8041158 8041326 -77654428 - AluSg/x SINE Alu -8 302 136 233 160 0 20 chr15 8041378 8041428 -77654326 + A-rich Low_complexity Low_complexity 2 50 0 1757 156 96 28 chr15 8041670 8042023 -77653731 - MLT1B LTR MaLR -11 379 3 1477 189 84 112 chr15 8042027 8042452 -77653302 + LTR8 LTR ERV1 4 375 -316 527 159 9 28 chr15 8043090 8043197 -77652557 - MER53 DNA DNA -82 107 3 2988 80 0 3 chr15 8044070 8044446 -77651308 - THE1C LTR MaLR 0 375 1 5878 103 4 9 chr15 8044446 8045254 -77650500 - THE1C-int LTR MaLR 0 1580 777 716 268 59 75 chr15 8045836 8046280 -77649474 + MLT1J LTR MaLR 24 511 0 5641 61 12 10 chr15 8046545 8047265 -77648489 - Harlequin LTR ERV1 -5912 984 263 2097 107 20 57 chr15 8047245 8047599 -77648155 - Harlequin LTR ERV1 -6497 399 59 * 2494 50 0 7 chr15 8047771 8048070 -77647684 + AluY SINE Alu 2 298 -13 1294 147 14 9 chr15 8048090 8048301 -77647453 + AluJb SINE Alu 85 296 -16 2105 112 0 10 chr15 8048603 8048907 -77646847 - AluSx SINE Alu -11 301 1 1354 209 0 0 chr15 8049240 8049498 -77646256 - L1PB4 LINE L1 -12 6144 5887 1095 203 16 32 chr15 8050199 8050280 -77645474 + L1 LINE L1 4476 4557 -1589 2357 77 27 0 chr15 8050280 8050578 -77645176 + AluSp SINE Alu 1 306 -7 1095 203 16 32 chr15 8050578 8050747 -77645007 + L1 LINE L1 4557 4722 -1424 13947 53 3 14 chr15 8050858 8052562 -77643192 - Harlequin LTR ERV1 -2517 4379 2693 2676 77 0 0 chr15 8054114 8054451 -77641303 - L1MA2 LINE L1 -370 5934 5598 2107 92 7 50 chr15 8054454 8054787 -77640967 - AluSx SINE Alu 0 312 1 378 229 31 0 chr15 8054949 8055045 -77640709 - MER103 DNA DNA -9 157 59 706 207 94 48 chr15 8055146 8055510 -77640244 + MLT1C LTR MaLR 5 458 -9 1805 77 28 4 chr15 8055896 8056144 -77639610 + L1PA13 LINE L1 5908 6161 -2 1112 146 131 16 chr15 8056214 8056485 -77639269 + MSTA LTR MaLR 91 428 0 183 244 44 0 chr15 8056923 8056968 -77638786 + MIR SINE MIR 72 118 -90 213 39 0 0 chr15 8057647 8057673 -77638081 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3799 107 23 12 chr15 8059669 8059858 -77635896 + LTR43 LTR ERV1 25 211 -391 1881 128 7 7 chr15 8059858 8060140 -77635614 + AluSx SINE Alu 16 297 -15 3799 107 23 12 chr15 8060140 8060521 -77635233 + LTR43 LTR ERV1 211 601 -1 441 246 159 34 chr15 8060791 8061055 -77634699 - L1MCa LINE L1 -2572 3854 3558 2242 252 59 25 chr15 8061064 8061268 -77634486 - L1MCa LINE L1 -3599 2827 2631 396 0 0 0 chr15 8061268 8061312 -77634442 + (TG)n Simple_repeat Simple_repeat 2 45 0 2242 252 59 25 chr15 8061312 8062234 -77633520 - L1MCa LINE L1 -3795 2631 1516 253 288 91 15 chr15 8062386 8062518 -77633236 + MIR SINE MIR 12 153 -109 398 257 176 93 chr15 8062527 8062935 -77632819 - LTR67 LTR ERVL -2 555 114 3611 232 66 28 chr15 8063625 8064504 -77631250 + L1MEc LINE L1 1856 2774 -3441 2464 158 11 34 chr15 8064504 8064946 -77630808 + MSTB1 LTR MaLR 1 432 0 3611 232 66 28 chr15 8064946 8065489 -77630265 + L1MEc LINE L1 2774 3295 -2920 2627 223 29 51 chr15 8066185 8067184 -77628570 - L1M4c LINE L1 -4519 1794 800 745 157 45 8 chr15 8067195 8067329 -77628425 + MSTA LTR MaLR 233 371 -57 893 101 25 0 chr15 8067354 8067473 -77628281 - FLAM_C SINE Alu -11 122 1 2187 106 0 3 chr15 8068122 8068427 -77627327 - AluSx SINE Alu 0 304 1 1556 197 37 34 chr15 8068427 8068777 -77626977 - MSTD LTR MaLR -43 353 3 1270 234 55 2 chr15 8068950 8069348 -77626406 - L1M4 LINE L1 -2098 4284 3866 1228 209 41 34 chr15 8069771 8070063 -77625691 - MLT1A2 LTR MaLR -78 296 3 274 306 19 37 chr15 8070201 8070472 -77625282 + L1M4 LINE L1 2237 2502 -3644 213 39 0 0 chr15 8070872 8070898 -77624856 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1934 106 26 4 chr15 8070898 8071163 -77624591 + AluSx SINE Alu 1 271 -41 536 225 125 21 chr15 8071711 8071880 -77623874 + MLT1J1 LTR MaLR 21 204 -246 2246 106 27 0 chr15 8071881 8072182 -77623572 - AluSx SINE Alu -3 309 1 274 262 143 60 chr15 8072453 8072789 -77622965 - L2 LINE L2 -543 2771 2408 2457 84 0 0 chr15 8072858 8073154 -77622600 - AluSq SINE Alu -17 296 1 374 216 55 80 chr15 8073156 8073267 -77622487 - L1M4 LINE L1 -4790 1594 1482 203 32 65 0 chr15 8073267 8073298 -77622456 + T-rich Low_complexity Low_complexity 3 35 0 374 216 55 80 chr15 8073298 8073496 -77622258 - L1M4 LINE L1 -4902 1482 1306 475 80 13 13 chr15 8076322 8076397 -77619357 + L1PA13 LINE L1 6082 6156 -7 231 376 50 0 chr15 8077125 8077226 -77618528 + MIR SINE MIR 20 125 -137 641 169 14 21 chr15 8077472 8077614 -77618140 + L1MA4A LINE L1 5983 6123 -180 401 223 0 21 chr15 8077617 8077711 -77618043 + L1MA4A LINE L1 6189 6280 -23 184 75 25 25 chr15 8079915 8079955 -77615799 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 267 303 0 20 chr15 8080613 8080712 -77615042 - MIR3 SINE MIR -11 197 101 2223 108 0 0 chr15 8081078 8081373 -77614381 - AluSx SINE Alu -17 295 1 770 265 49 73 chr15 8082086 8082539 -77613215 + L2 LINE L2 2872 3313 0 26 0 0 0 chr15 8082546 8082572 -77613182 + AT_rich Low_complexity Low_complexity 1 26 0 694 36 0 0 chr15 8082665 8082749 -77613005 - L1PA5 LINE L1 -1 6153 6070 2351 88 3 0 chr15 8082750 8083047 -77612707 - AluSp SINE Alu -15 298 1 420 314 35 6 chr15 8083517 8083689 -77612065 - MIR SINE MIR -6 256 80 691 286 105 58 chr15 8084394 8084984 -77610770 - HAL1 LINE L1 -707 1800 1183 208 184 81 35 chr15 8085397 8085484 -77610270 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 11852 65 15 0 chr15 8085924 8087398 -77608356 + Harlequin LTR ERV1 5401 6896 0 1690 203 14 23 chr15 8087398 8087856 -77607898 + LTR2B LTR ERV1 1 490 0 1477 225 37 44 chr15 8089100 8089160 -77606594 + L1M4 LINE L1 16 75 -6467 222 37 0 0 chr15 8089160 8089187 -77606567 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1477 225 37 44 chr15 8089187 8089535 -77606219 + L1M4 LINE L1 75 421 -6121 603 240 0 0 chr15 8089560 8089685 -77606069 + L1M4 LINE L1 1085 1209 -5333 528 233 100 7 chr15 8089726 8089876 -77605878 + MER103 DNA DNA 1 164 -2 7906 19 0 4 chr15 8090035 8090979 -77604775 + L1HS LINE L1 5216 6155 0 4545 150 13 29 chr15 8090975 8091349 -77604405 + L1M4 LINE L1 1869 2248 -4396 * 1885 146 53 0 chr15 8091349 8091630 -77604124 + AluSx SINE Alu 1 296 -16 4545 150 13 29 chr15 8091630 8092104 -77603650 + L1M4 LINE L1 2248 3145 -3499 1914 71 71 0 chr15 8092590 8092829 -77602925 + AluSq SINE Alu 1 256 -57 371 201 169 58 chr15 8094361 8094500 -77601254 - MIR3 SINE MIR -43 165 31 260 154 19 0 chr15 8094786 8094838 -77600916 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 3157 80 2 88 chr15 8095026 8095526 -77600228 + LTR8 LTR ERV1 1 457 -234 607 272 96 27 chr15 8096962 8097242 -77598512 + L1ME4a LINE L1 5174 5433 -729 2266 107 0 0 chr15 8097242 8097532 -77598222 - AluSx SINE Alu -22 290 1 607 272 96 27 chr15 8097532 8097751 -77598003 + L1ME4a LINE L1 5433 5704 -458 831 174 0 0 chr15 8097754 8097886 -77597868 - AluSg/x SINE Alu -8 304 173 2036 122 14 0 chr15 8098270 8098565 -77597189 - AluSq SINE Alu -14 299 1 481 309 92 32 chr15 8099132 8099414 -77596340 + L2 LINE L2 2532 2830 -484 893 279 14 9 chr15 8099794 8100013 -77595741 - LTR16C LTR ERVL 0 491 272 260 178 22 0 chr15 8100046 8100091 -77595663 + LTR16C LTR ERVL 199 244 -247 367 191 36 20 chr15 8100228 8100378 -77595376 - L1M3 LINE L1 -634 5537 5323 840 251 70 18 chr15 8100478 8100808 -77594946 + L1M4 LINE L1 4446 4792 -1354 305 225 25 38 chr15 8100820 8100900 -77594854 - MER5B DNA MER1_type -98 80 2 572 295 116 68 chr15 8101776 8102413 -77593341 - L3 LINE CR1 -259 1318 651 2594 55 0 7 chr15 8103603 8103913 -77591841 + AluY SINE Alu 1 308 -3 279 247 50 111 chr15 8104002 8104141 -77591613 + L1ME4a LINE L1 5854 5969 -152 2124 86 32 4 chr15 8104141 8104420 -77591334 + AluSx SINE Alu 1 287 -25 279 247 50 111 chr15 8104420 8104559 -77591195 + L1ME4a LINE L1 5969 6115 -6 369 150 17 0 chr15 8104872 8104932 -77590822 + MLT1A2 LTR MaLR 1 61 -313 1068 257 115 41 chr15 8105246 8105733 -77590021 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr15 8105911 8105938 -77589816 + AT_rich Low_complexity Low_complexity 1 27 0 670 271 4 62 chr15 8106140 8106384 -77589370 - MLT1K LTR MaLR -3 585 356 266 259 75 75 chr15 8106402 8106576 -77589178 - MLT1K LTR MaLR -359 229 56 1140 170 57 145 chr15 8106653 8106971 -77588783 + AluJb SINE Alu 1 290 -12 222 348 0 65 chr15 8107035 8107140 -77588614 + L2 LINE L2 2487 2580 -734 835 204 122 5 chr15 8107140 8107336 -77588418 - MER20B DNA MER1_type 0 219 1 222 348 0 65 chr15 8107336 8107385 -77588369 + L2 LINE L2 2580 2631 -683 243 0 0 0 chr15 8107391 8107418 -77588336 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1640 171 0 0 chr15 8107514 8107759 -77587995 - AluSx SINE Alu -67 245 1 2024 142 0 43 chr15 8107928 8108252 -77587502 - AluSx SINE Alu -2 310 1 197 332 53 91 chr15 8108330 8108517 -77587237 + L2 LINE L2 2872 3051 -221 184 360 56 11 chr15 8108755 8108844 -77586910 + MIR SINE MIR 61 153 -109 2588 195 9 26 chr15 8109143 8109681 -77586073 + L1MB8 LINE L1 5542 6070 -108 1908 132 0 4 chr15 8109681 8109953 -77585801 + AluSx SINE Alu 1 271 -41 1243 183 12 74 chr15 8110055 8110378 -77585376 + MER83B-int LTR ERV1 2930 3232 -2714 1853 197 52 65 chr15 8110391 8110793 -77584961 + MER83B-int LTR ERV1 2886 3269 -1611 1883 138 0 31 chr15 8110793 8111112 -77584642 + AluSx SINE Alu 1 310 0 1853 197 52 65 chr15 8111112 8111246 -77584508 + MER83B-int LTR ERV1 3269 3403 -1477 1549 210 16 57 chr15 8111310 8111682 -77584072 + MLT1A1 LTR MaLR 1 357 -8 7272 134 33 12 chr15 8111799 8112640 -77583114 + Tigger1 DNA MER2_type 1 877 -1541 2297 125 0 3 chr15 8112640 8112952 -77582802 + AluSq SINE Alu 1 311 -2 7272 134 33 12 chr15 8112952 8113309 -77582445 + Tigger1 DNA MER2_type 877 1225 -1193 614 286 95 8 chr15 8113440 8113692 -77582062 - ERVL LTR ERVL -667 5097 4824 538 295 66 0 chr15 8113808 8113974 -77581780 - ERVL LTR ERVL -1089 4675 4499 315 260 0 0 chr15 8114670 8114743 -77581011 - L1M1 LINE L1 -4193 3372 3300 11055 204 34 20 chr15 8114800 8115156 -77580598 - L1PB2 LINE L1 -3 6148 5799 267 31 0 0 chr15 8115156 8115188 -77580566 + (TG)n Simple_repeat Simple_repeat 2 33 0 11055 204 34 20 chr15 8115188 8116302 -77579452 - L1PB2 LINE L1 -352 5799 4703 2200 142 39 25 chr15 8116302 8116661 -77579093 + THE1B LTR MaLR 1 364 0 11055 204 34 20 chr15 8116661 8116939 -77578815 - L1PB2 LINE L1 -1448 4703 4431 293 0 0 26 chr15 8116939 8116977 -77578777 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 11055 204 34 20 chr15 8116977 8117198 -77578556 - L1PB2 LINE L1 -1720 4431 4215 9252 58 3 2 chr15 8117198 8118266 -77577488 - MER11C LTR ERVK -2 1069 1 11055 204 34 20 chr15 8118266 8119812 -77575942 - L1PB2 LINE L1 -1936 4215 2552 340 285 10 67 chr15 8120300 8120493 -77575261 + L1ME4a LINE L1 5783 5964 -157 237 279 100 56 chr15 8120809 8121078 -77574676 + L1 LINE L1 4736 5016 -1130 516 225 196 35 chr15 8121482 8121632 -77574122 - AluJo SINE Alu -15 297 114 206 81 27 0 chr15 8121632 8121669 -77574085 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 516 225 196 35 chr15 8121669 8121691 -77574063 - AluJo SINE Alu -198 114 97 440 141 0 0 chr15 8121705 8121769 -77573985 - AluSp/q SINE Alu -36 267 204 3456 177 4 2 chr15 8121769 8122324 -77573430 + L1PA12 LINE L1 1030 1585 -5996 3391 148 44 19 chr15 8122322 8122952 -77572802 + L1PA12 LINE L1 2388 3033 -4541 * 5265 126 37 16 chr15 8123066 8123901 -77571853 - L1PB2 LINE L1 -5251 895 9 2068 124 0 0 chr15 8123914 8124188 -77571566 - AluSx SINE Alu -15 297 24 1034 175 11 26 chr15 8124188 8124377 -77571377 - MLT1C LTR MaLR -281 186 1 24 0 0 0 chr15 8127213 8127237 -77568517 + AT_rich Low_complexity Low_complexity 1 24 0 188 122 24 0 chr15 8127752 8127793 -77567961 + T-rich Low_complexity Low_complexity 6 47 0 207 281 135 11 chr15 8128141 8128230 -77567524 - MIR3 SINE MIR 0 208 109 385 249 12 89 chr15 8128405 8128574 -77567180 - LTR2 LTR ERV1 -293 156 1 316 138 17 0 chr15 8128908 8128966 -77566788 - MLT1E LTR MaLR -2 565 507 1523 205 51 32 chr15 8128966 8129336 -77566418 - MSTD LTR MaLR -19 377 1 1764 278 71 14 chr15 8129336 8129606 -77566148 - MLT1E LTR MaLR -56 537 284 2148 148 3 0 chr15 8129606 8129917 -77565837 - AluSp SINE Alu -1 312 1 1764 278 71 14 chr15 8129917 8130154 -77565600 - MLT1E LTR MaLR -309 284 1 1082 237 53 0 chr15 8130192 8130437 -77565317 - MIR SINE MIR -3 259 2 1918 159 37 67 chr15 8131556 8131958 -77563796 + MLT1B LTR MaLR 1 390 0 1443 180 38 52 chr15 8132288 8132632 -77563122 - MER44D DNA MER2_type 0 609 1 2303 89 10 0 chr15 8133474 8133766 -77561988 + AluSx SINE Alu 1 295 -17 242 186 0 0 chr15 8134091 8134134 -77561620 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr15 8134523 8134555 -77561199 + AT_rich Low_complexity Low_complexity 1 32 0 2280 87 13 0 chr15 8134562 8134860 -77560894 - AluY SINE Alu -7 304 3 21 36 0 0 chr15 8135664 8135692 -77560062 + AT_rich Low_complexity Low_complexity 1 28 0 2265 101 3 0 chr15 8137183 8137480 -77558274 - AluSx SINE Alu -14 298 1 621 291 39 35 chr15 8137589 8137843 -77557911 - LTR40b LTR ERVL -5 457 203 373 190 267 0 chr15 8138023 8138139 -77557615 - LTR40a LTR ERVL -372 147 1 1817 166 11 0 chr15 8138334 8138617 -77557137 - AluJo SINE Alu -26 286 1 5669 150 12 7 chr15 8139392 8139525 -77556229 + L1MA4 LINE L1 5237 5368 -932 2025 134 0 0 chr15 8139525 8139835 -77555919 + AluSx SINE Alu 1 310 0 5669 150 12 7 chr15 8139835 8140750 -77555004 + L1MA4 LINE L1 5368 6291 -9 1555 81 0 5 chr15 8141040 8141262 -77554492 - L1P LINE L1 -1216 4930 4710 * 3082 71 23 2 chr15 8141251 8141686 -77554068 - L1P LINE L1 -1697 4449 4006 1207 97 0 0 chr15 8142135 8142300 -77553454 + L1PA13 LINE L1 5980 6144 -19 53 17 0 0 chr15 8142301 8142361 -77553393 + AT_rich Low_complexity Low_complexity 1 60 0 2385 94 3 0 chr15 8142687 8142995 -77552759 + AluSc SINE Alu 1 309 0 21 36 0 0 chr15 8143100 8143128 -77552626 + AT_rich Low_complexity Low_complexity 1 28 0 2175 130 0 3 chr15 8143693 8143992 -77551762 + AluJb SINE Alu 3 300 -12 2010 151 0 10 chr15 8145176 8145480 -77550274 - AluSx SINE Alu -3 309 9 959 189 0 0 chr15 8145491 8145650 -77550104 - FRAM SINE Alu -17 159 1 25 51 0 0 chr15 8145943 8145982 -77549772 + AT_rich Low_complexity Low_complexity 1 39 0 394 18 36 0 chr15 8146083 8146138 -77549616 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 428 253 102 49 chr15 8146176 8146370 -77549384 - MIR SINE MIR -46 216 15 2062 167 0 24 chr15 8147190 8147562 -77548192 - MLT1A1 LTR MaLR -2 363 1 226 230 6 0 chr15 8147562 8147609 -77548145 + MER5B DNA MER1_type 64 123 -66 610 218 127 30 chr15 8147842 8148007 -77547747 - MER5A DNA MER1_type 0 189 9 263 307 10 0 chr15 8150546 8150647 -77545107 + MER94 DNA DNA 1 102 -32 2263 122 6 3 chr15 8150782 8151094 -77544660 + AluSq SINE Alu 1 313 0 243 286 14 0 chr15 8152067 8152137 -77543617 + GA-rich Low_complexity Low_complexity 2 72 0 26 0 0 0 chr15 8152763 8152789 -77542965 + AT_rich Low_complexity Low_complexity 1 26 0 318 251 57 109 chr15 8153111 8153322 -77542432 - LTR41 LTR ERVL -564 209 10 207 326 174 0 chr15 8153366 8153464 -77542290 + L2 LINE L2 2233 2347 -967 26 0 0 0 chr15 8153547 8153573 -77542181 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 103 22 chr15 8153866 8154098 -77541656 - MIR SINE MIR -7 255 5 3524 188 42 39 chr15 8154122 8154642 -77541112 + L1MB4 LINE L1 4415 4932 -1248 2587 185 9 0 chr15 8154642 8155101 -77540653 + MLT1C LTR MaLR 5 467 0 3524 188 42 39 chr15 8155101 8155893 -77539861 + L1MB4 LINE L1 4932 5720 -460 2106 120 3 3 chr15 8155893 8156192 -77539562 + AluSc SINE Alu 1 299 -10 3524 188 42 39 chr15 8156192 8156296 -77539458 + L1MB4 LINE L1 5720 5822 -358 2189 105 0 13 chr15 8156296 8156601 -77539153 + AluSc SINE Alu 1 301 -8 3524 188 42 39 chr15 8156601 8156938 -77538816 + L1MB4 LINE L1 5822 6174 -6 421 252 101 0 chr15 8157318 8157437 -77538317 - MIR SINE MIR 0 262 132 415 341 7 7 chr15 8157697 8157832 -77537922 + L2 LINE L2 3137 3271 -1 22 0 0 0 chr15 8158455 8158477 -77537277 + AT_rich Low_complexity Low_complexity 1 22 0 2271 99 3 0 chr15 8160456 8160748 -77535006 + AluSx SINE Alu 1 293 -19 3521 135 4 0 chr15 8161403 8161930 -77533824 - LTR26B LTR ERV1 -2 529 1 997 65 43 0 chr15 8162802 8162940 -77532814 - L1MA2 LINE L1 -5 6299 6156 1197 93 0 0 chr15 8163763 8163914 -77531840 + AluSq/x SINE Alu 1 151 -161 2688 97 11 3 chr15 8165781 8166153 -77529601 + THE1C LTR MaLR 1 375 0 2485 79 93 109 chr15 8166153 8166649 -77529105 + THE1C-int LTR MaLR 1 488 -1092 6753 179 86 20 chr15 8166750 8168189 -77527565 + MER52A LTR ERV1 223 1755 0 180 111 0 0 chr15 8168413 8168440 -77527314 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr15 8168932 8169005 -77526749 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr15 8169600 8170246 -77525508 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr15 8170396 8170890 -77524864 - L1M4 LINE L1 -3444 2702 2159 820 199 6 0 chr15 8171431 8171607 -77524147 - L1MB3 LINE L1 -197 5986 5810 579 266 10 3 chr15 8171726 8171869 -77523885 + MER45A DNA AcHobo 28 169 -9 609 242 25 80 chr15 8171920 8172026 -77523728 - L1MB3 LINE L1 -1393 4753 4643 2404 59 16 7 chr15 8172026 8172333 -77523421 - AluY SINE Alu -1 310 1 609 242 25 80 chr15 8172333 8172540 -77523214 - L1MB3 LINE L1 -1503 4643 4457 2670 192 58 12 chr15 8172594 8172844 -77522910 - L1MB2 LINE L1 -123 6048 5811 2280 141 88 8 chr15 8172844 8173240 -77522514 + MSTA LTR MaLR 1 428 0 2670 192 58 12 chr15 8173240 8173630 -77522124 - L1MB2 LINE L1 -360 5811 5379 2715 191 12 20 chr15 8173631 8174179 -77521575 - MLT2B3 LTR ERVL -19 514 1 1544 228 24 2 chr15 8174179 8174596 -77521158 - L1MB2 LINE L1 -782 5364 4939 2612 72 8 3 chr15 8174602 8174965 -77520789 + THE1-int LTR MaLR 61 425 -1155 2339 98 0 0 chr15 8174966 8175263 -77520491 - AluSq SINE Alu -16 297 1 5249 204 39 43 chr15 8175344 8175953 -77519801 - L1MB2 LINE L1 -1265 4881 4271 270 0 0 0 chr15 8175953 8175983 -77519771 + (TG)n Simple_repeat Simple_repeat 1 30 0 5249 204 39 43 chr15 8175983 8176896 -77518858 - L1MB2 LINE L1 -1875 4271 3365 1166 241 31 3 chr15 8176896 8177219 -77518535 - L1MB2 LINE L1 -3208 2938 2607 2176 121 0 0 chr15 8177220 8177509 -77518245 - AluSq SINE Alu -22 291 3 236 300 28 67 chr15 8178060 8178240 -77517514 - HAL1b LINE L1 -825 523 351 263 184 0 36 chr15 8178244 8178311 -77517443 + L1MC/D LINE L1 5541 5598 -644 2222 108 0 3 chr15 8180456 8180762 -77514992 + AluSx SINE Alu 1 305 -7 319 234 86 78 chr15 8183680 8183936 -77511818 - Charlie7 DNA MER1_type -144 2468 2211 569 290 30 21 chr15 8185377 8185702 -77510052 + MLT1I LTR MaLR 40 400 -9 2242 88 0 3 chr15 8186003 8186311 -77509443 - AluSq SINE Alu 0 307 1 225 309 55 55 chr15 8186488 8186598 -77509156 + L2 LINE L2 3204 3313 0 446 324 56 42 chr15 8186609 8186825 -77508929 + L3 LINE CR1 909 1127 -450 310 370 65 16 chr15 8187263 8187447 -77508307 - MIR SINE MIR -50 212 20 * 429 297 179 29 chr15 8187443 8187716 -77508038 + L3 LINE CR1 1204 1517 -60 1808 160 7 4 chr15 8188612 8188893 -77506861 + AluJo SINE Alu 1 282 -30 360 256 0 0 chr15 8188835 8188913 -77506841 + AluJ/FRAM SINE Alu 225 302 0 216 67 0 0 chr15 8188895 8188925 -77506829 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 3424 148 50 62 chr15 8189068 8189830 -77505924 + HUERS-P1 LTR ERV1 4449 5201 -745 2284 135 120 5 chr15 8189830 8190214 -77505540 - MSTA LTR MaLR 0 428 1 7388 186 126 8 chr15 8190214 8191691 -77504063 - MSTA-int LTR MaLR 0 1651 1 2362 132 62 34 chr15 8191691 8192107 -77503647 - MSTA LTR MaLR 0 428 1 1448 190 45 23 chr15 8192107 8192171 -77503583 + HUERS-P1 LTR ERV1 5430 5491 -840 2627 103 13 19 chr15 8192171 8192548 -77503206 + THE1C LTR MaLR 1 375 0 1448 190 45 23 chr15 8192548 8192836 -77502918 + HUERS-P1 LTR ERV1 5491 5790 -541 1280 167 140 39 chr15 8192848 8193183 -77502571 + HUERS-P1 LTR ERV1 5906 6274 -57 764 272 22 0 chr15 8193268 8193452 -77502302 + HUERS-P1 LTR ERV1 5950 6137 -126 2779 205 24 56 chr15 8193537 8194234 -77501520 + LTR8 LTR ERV1 16 690 -1 2207 99 0 13 chr15 8197260 8197564 -77498190 - AluSq SINE Alu -13 300 1 311 295 0 36 chr15 8197659 8197771 -77497983 - L1MC5 LINE L1 -145 7816 7709 344 254 30 52 chr15 8198383 8198517 -77497237 - HAL1 LINE L1 -122 2385 2255 690 291 225 44 chr15 8198787 8198904 -77496850 - HAL1 LINE L1 -698 1809 1715 1884 115 26 36 chr15 8198904 8199151 -77496603 - L1PA15 LINE L1 0 6165 5920 2224 76 7 0 chr15 8199151 8199440 -77496314 + AluSx SINE Alu 1 291 -21 1884 115 26 36 chr15 8199440 8199497 -77496257 - L1PA15 LINE L1 -245 5920 5864 690 291 225 44 chr15 8199497 8200907 -77494847 - HAL1 LINE L1 -792 1715 5 1131 181 84 50 chr15 8201198 8201519 -77494235 - L1MC/D LINE L1 -2199 5586 5255 202 268 0 0 chr15 8204778 8204819 -77490935 + polypyrimidine Low_complexity Low_complexity 3 43 0 1325 281 144 29 chr15 8205695 8206382 -77489372 - L1MC4a LINE L1 -743 5403 5092 2145 88 3 0 chr15 8206382 8206665 -77489089 - AluSx SINE Alu -28 284 1 1325 281 144 29 chr15 8206665 8206812 -77488942 - L1MC4a LINE L1 -1054 5092 4963 216 292 90 11 chr15 8207578 8207667 -77488087 + MIR3 SINE MIR 59 154 -54 650 265 132 0 chr15 8209679 8209868 -77485886 + Charlie1 DNA MER1_type 1 214 -2547 230 278 14 14 chr15 8209885 8209957 -77485797 + Charlie1 DNA MER1_type 2633 2704 -57 704 220 81 47 chr15 8210720 8211093 -77484661 - MLT1C LTR MaLR 0 467 5 367 229 31 0 chr15 8211194 8211290 -77484464 + MER103 DNA DNA 59 157 -9 1586 116 13 0 chr15 8211452 8211677 -77484077 + AluSq SINE Alu 1 228 -85 357 24 0 0 chr15 8211700 8211742 -77484012 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 346 229 106 39 chr15 8211787 8211966 -77483788 - HAL1 LINE L1 -95 2412 2222 259 290 0 0 chr15 8212247 8212316 -77483438 + MIR SINE MIR 159 227 -35 338 254 12 83 chr15 8212672 8212841 -77482913 - HAL1 LINE L1 -949 1558 1402 2156 89 3 10 chr15 8213691 8213983 -77481771 - AluSg SINE Alu -18 292 3 340 273 6 43 chr15 8214318 8214479 -77481275 + L1ME4a LINE L1 5967 6121 0 1617 182 20 37 chr15 8216620 8216972 -77478782 + MLT1A1 LTR MaLR 3 348 -17 1001 178 0 0 chr15 8224014 8224177 -77471577 + FRAM SINE Alu 1 163 -3 1486 153 102 11 chr15 8225956 8226230 -77469524 + AluJo SINE Alu 2 300 -12 192 179 0 0 chr15 8226671 8226710 -77469044 + (TG)n Simple_repeat Simple_repeat 1 39 0 398 301 37 34 chr15 8227432 8227665 -77468089 + HAL1 LINE L1 823 1059 -1448 2224 116 0 0 chr15 8227665 8227968 -77467786 + AluSx SINE Alu 1 303 -9 398 301 37 34 chr15 8227968 8228086 -77467668 + HAL1 LINE L1 1059 1175 -1332 749 246 107 85 chr15 8228783 8228809 -77466945 + MLT1J LTR MaLR 1 25 -486 2201 225 86 34 chr15 8228809 8229346 -77466408 - MLT1F1 LTR MaLR -2 565 1 749 246 107 85 chr15 8229346 8229729 -77466025 + MLT1J LTR MaLR 25 419 -92 2379 73 10 10 chr15 8229813 8230126 -77465628 + AluSq SINE Alu 1 313 0 2107 99 0 0 chr15 8231422 8231724 -77464030 + AluSg SINE Alu 1 302 0 365 304 99 48 chr15 8231731 8232004 -77463750 - L1MC4 LINE L1 -31 8011 7725 396 0 0 0 chr15 8232546 8232590 -77463164 + (TG)n Simple_repeat Simple_repeat 1 44 0 286 23 47 0 chr15 8232590 8232633 -77463121 + (GA)n Simple_repeat Simple_repeat 2 46 0 831 257 57 21 chr15 8232816 8233096 -77462658 - L1MC4a LINE L1 -1952 5856 5567 410 347 43 14 chr15 8233104 8233330 -77462424 - MIR SINE MIR -12 250 20 297 262 158 0 chr15 8234387 8234501 -77461253 - MIR SINE MIR -63 145 20 254 281 45 34 chr15 8235318 8235407 -77460347 - LTR33 LTR ERVL -341 180 91 880 193 173 85 chr15 8236681 8236895 -77458859 - MLT1A2 LTR MaLR 0 374 117 2089 122 0 0 chr15 8236895 8237189 -77458565 + AluSx SINE Alu 1 294 -18 880 193 173 85 chr15 8237189 8237316 -77458438 - MLT1A2 LTR MaLR -257 117 3 2240 108 0 0 chr15 8237854 8238159 -77457595 + AluSx SINE Alu 1 305 -7 195 162 0 0 chr15 8239039 8239076 -77456678 + (CA)n Simple_repeat Simple_repeat 2 38 0 1901 168 44 18 chr15 8239551 8239890 -77455864 + MER7A DNA MER2_type 1 346 0 480 35 0 0 chr15 8241889 8241947 -77453807 + (CA)n Simple_repeat Simple_repeat 1 58 0 2622 80 0 0 chr15 8242641 8242954 -77452800 + AluSq SINE Alu 1 313 0 736 282 116 28 chr15 8243345 8243732 -77452022 + L1MC4 LINE L1 7340 7760 -282 579 288 10 25 chr15 8244058 8244256 -77451498 + MIR SINE MIR 39 233 -29 308 289 30 73 chr15 8245187 8245419 -77450335 + L1MC/D LINE L1 5605 5826 -1982 27 0 0 0 chr15 8249055 8249082 -77446672 + GC_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr15 8249269 8249296 -77446458 + GC_rich Low_complexity Low_complexity 1 27 0 37 76 0 0 chr15 8249486 8249565 -77446189 + GC_rich Low_complexity Low_complexity 1 79 0 36 106 0 0 chr15 8249975 8250116 -77445638 + GC_rich Low_complexity Low_complexity 1 141 0 30 0 0 0 chr15 8250414 8250444 -77445310 + GC_rich Low_complexity Low_complexity 1 30 0 202 725 7 0 chr15 8250451 8250589 -77445165 + (GGCTG)n Simple_repeat Simple_repeat 3 141 0 30 27 0 0 chr15 8250830 8250867 -77444887 + GC_rich Low_complexity Low_complexity 1 37 0 3494 271 144 19 chr15 8253285 8254932 -77440822 + HAL1 LINE L1 84 1937 -570 304 239 266 0 chr15 8254968 8255081 -77440673 - MLT1I LTR MaLR -71 338 196 232 94 0 0 chr15 8255613 8255645 -77440109 - MLT1A2 LTR MaLR -62 312 281 890 240 151 43 chr15 8256026 8256302 -77439452 - MLT1I LTR MaLR 0 409 86 1829 164 5 67 chr15 8256302 8256457 -77439297 + MLT1A1 LTR MaLR 1 164 -201 2197 109 20 10 chr15 8256457 8256759 -77438995 + AluSx SINE Alu 1 305 -7 1829 164 5 67 chr15 8256759 8256992 -77438762 + MLT1A1 LTR MaLR 164 365 0 890 240 151 43 chr15 8256992 8257065 -77438689 - MLT1I LTR MaLR -323 86 22 794 292 111 39 chr15 8257100 8257437 -77438317 + HAL1 LINE L1 1957 2345 -162 2124 196 88 35 chr15 8257437 8258029 -77437725 + MLT1E3 LTR MaLR 1 623 -1 794 292 111 39 chr15 8258029 8258205 -77437549 + HAL1 LINE L1 2345 2507 0 1937 112 98 0 chr15 8258290 8258567 -77437187 - AluSg SINE Alu -6 304 1 372 341 96 10 chr15 8258567 8258775 -77436979 + MLT1J2 LTR MaLR 73 298 -152 184 336 64 0 chr15 8259953 8260063 -77435691 - MIR SINE MIR -83 179 63 2152 111 0 36 chr15 8261544 8261850 -77433904 + AluSx SINE Alu 3 297 -15 1087 213 171 72 chr15 8261877 8262346 -77433408 + MLT1G LTR MaLR 76 590 0 2449 89 0 13 chr15 8262364 8262678 -77433076 - AluSg SINE Alu 0 310 1 645 132 88 29 chr15 8262817 8262953 -77432801 + MLT1E3 LTR MaLR 1 144 -480 2522 76 0 0 chr15 8264085 8264386 -77431368 - AluY SINE Alu -10 301 1 248 318 86 18 chr15 8264407 8264579 -77431175 - L1M4 LINE L1 -3733 2413 2213 2099 126 13 0 chr15 8264579 8264880 -77430874 + AluSx SINE Alu 1 305 -7 248 318 86 18 chr15 8264880 8264987 -77430767 - L1M4 LINE L1 -3933 2213 2115 1077 246 68 14 chr15 8265327 8265620 -77430134 + MSTC LTR MaLR 1 309 -119 189 0 0 0 chr15 8266498 8266519 -77429235 + (A)n Simple_repeat Simple_repeat 1 21 0 2345 99 0 29 chr15 8270331 8270645 -77425109 + AluSg SINE Alu 1 305 -5 413 239 72 22 chr15 8270805 8270985 -77424769 + MER115 DNA AcHobo 58 246 -447 246 32 0 0 chr15 8271052 8271083 -77424671 + (GGCTG)n Simple_repeat Simple_repeat 2 32 0 347 259 168 5 chr15 8271091 8271276 -77424478 + MER115 DNA AcHobo 401 615 -78 3233 216 31 28 chr15 8271305 8272084 -77423670 + MER21B LTR ERV1 5 785 -78 232 288 38 12 chr15 8272645 8272725 -77423029 + MLT1L LTR MaLR 222 303 -312 1111 241 66 6 chr15 8273335 8273654 -77422100 + MER46C DNA MER2_type 1 338 0 835 182 6 77 chr15 8274710 8274891 -77420863 - FRAM SINE Alu -5 171 4 724 259 61 18 chr15 8274982 8275260 -77420494 + L1MEc LINE L1 35 324 -6072 2133 139 0 16 chr15 8275277 8275594 -77420160 + AluSx SINE Alu 1 312 0 1600 112 21 150 chr15 8275806 8276180 -77419574 + MER7A DNA MER2_type 1 324 -22 776 272 31 24 chr15 8276245 8276660 -77419094 + L1MEc LINE L1 660 1077 -5319 267 323 24 32 chr15 8276665 8276789 -77418965 + L1MDb LINE L1 7 129 -6280 311 264 11 11 chr15 8276899 8276986 -77418768 + L1MDb LINE L1 116 202 -6204 5663 251 50 17 chr15 8277504 8278175 -77417579 + L1MDb LINE L1 780 1427 -6015 2123 153 0 0 chr15 8278175 8278483 -77417271 + AluSx SINE Alu 1 308 -4 5663 251 50 17 chr15 8278483 8278528 -77417226 + L1MDb LINE L1 1427 1469 -5973 934 110 6 28 chr15 8278528 8278710 -77417044 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5663 251 50 17 chr15 8278710 8279402 -77416352 + L1MDb LINE L1 1469 2137 -5305 2175 132 0 0 chr15 8279402 8279697 -77416057 + AluSx SINE Alu 1 295 -17 5663 251 50 17 chr15 8279697 8279755 -77415999 + L1MDb LINE L1 2137 2192 -5250 333 0 0 0 chr15 8279755 8279792 -77415962 + (TA)n Simple_repeat Simple_repeat 1 37 0 5663 251 50 17 chr15 8279792 8281190 -77414564 + L1MDb LINE L1 2192 3542 -3900 2273 103 3 0 chr15 8281190 8281481 -77414273 - AluSg SINE Alu -18 292 1 5663 251 50 17 chr15 8281481 8282494 -77413260 + L1MDb LINE L1 3542 5704 -1738 1465 218 20 59 chr15 8282774 8282991 -77412763 + L1M4 LINE L1 4390 4614 -1532 1722 85 48 0 chr15 8282991 8283262 -77412492 + L1MA3 LINE L1 6020 6303 -2 1465 218 20 59 chr15 8283262 8283534 -77412220 + L1M4 LINE L1 4614 4860 -1286 4212 182 47 32 chr15 8283552 8284537 -77411217 - L1MB7 LINE L1 -23 6161 5154 2225 103 7 0 chr15 8284537 8284856 -77410898 + AluSp SINE Alu 1 313 0 4212 182 47 32 chr15 8284856 8285407 -77410347 - L1MB7 LINE L1 -1030 5154 4613 468 308 57 38 chr15 8285452 8285871 -77409883 + L1MEc LINE L1 1060 1486 -4910 5309 145 38 24 chr15 8285872 8286846 -77408908 + L1MC1 LINE L1 5346 6333 0 312 242 156 16 chr15 8286847 8286975 -77408779 + L1MEc LINE L1 1432 1577 -4638 753 251 76 51 chr15 8286980 8287374 -77408380 + L1MEc LINE L1 1845 2248 -4148 505 300 58 10 chr15 8287344 8287657 -77408097 + L1MEc LINE L1 2179 2506 -3709 * 1328 212 44 80 chr15 8287662 8287828 -77407926 + MLT1B LTR MaLR 1 171 -219 2186 139 0 0 chr15 8287828 8288129 -77407625 + AluSx SINE Alu 1 301 -11 1328 212 44 80 chr15 8288129 8288348 -77407406 + MLT1B LTR MaLR 171 372 -18 1853 227 118 2 chr15 8288364 8288888 -77406866 + L1MEc LINE L1 2513 3097 -3118 288 111 0 0 chr15 8289058 8289103 -77406651 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 212 71 0 chr15 8290531 8290616 -77405138 - MER45C DNA AcHobo -145 808 718 487 198 10 0 chr15 8290720 8290816 -77404938 - MER45C DNA AcHobo -776 177 81 456 323 69 44 chr15 8291573 8291942 -77403812 + HERV16 LTR ERVL 492 866 -4130 1705 175 66 0 chr15 8291942 8292262 -77403492 - L1MB3 LINE L1 -7 6176 5836 456 323 69 44 chr15 8292262 8292439 -77403315 + HERV16 LTR ERVL 866 1037 -3959 251 286 36 12 chr15 8292494 8292578 -77403176 + HERV16 LTR ERVL 1007 1092 -3904 2062 326 125 10 chr15 8292740 8293856 -77401898 + HERV16 LTR ERVL 1375 2658 -2430 2286 67 13 25 chr15 8295486 8295801 -77399953 - AluY SINE Alu 0 311 1 350 382 24 14 chr15 8296288 8296495 -77399259 + MIR SINE MIR 6 214 -48 541 196 250 7 chr15 8296589 8296737 -77399017 - LTR2 LTR ERV1 0 449 266 296 312 6 81 chr15 8296733 8296906 -77398848 - LTR2 LTR ERV1 -289 160 1 * 185 253 96 72 chr15 8297730 8297813 -77397941 - MIR SINE MIR -72 190 106 329 266 82 53 chr15 8298830 8299015 -77396739 + LTR33 LTR ERVL 1 166 -355 408 257 18 9 chr15 8299214 8299327 -77396427 + LTR33A LTR ERVL 407 520 -3 390 268 63 39 chr15 8300000 8300185 -77395569 - MLT1G LTR MaLR -138 417 218 447 186 23 0 chr15 8300490 8300568 -77395186 + MER67A LTR ERV1 1 80 -463 1086 235 70 60 chr15 8300568 8301027 -77394727 + MER67B LTR ERV1 1 341 -331 1728 143 17 7 chr15 8301027 8301321 -77394433 + AluY SINE Alu 1 297 -14 1086 235 70 60 chr15 8301321 8301385 -77394369 + MER67B LTR ERV1 341 403 -269 447 255 72 18 chr15 8301395 8301599 -77394155 + MER67A LTR ERV1 289 541 -2 672 205 0 0 chr15 8302172 8302338 -77393416 + (TG)n Simple_repeat Simple_repeat 2 167 0 199 339 0 0 chr15 8305770 8305829 -77389925 - L2 LINE L2 -9 3263 3205 330 67 0 0 chr15 8307286 8307331 -77388423 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 295 85 31 chr15 8307936 8308065 -77387689 - MIR SINE MIR -56 152 17 367 282 150 29 chr15 8308365 8308638 -77387116 + ERVL LTR ERVL 5038 5343 -421 1531 193 7 10 chr15 8308660 8308956 -77386798 + AluSx SINE Alu 1 295 -17 1786 244 89 21 chr15 8308956 8309360 -77386394 - L1ME3A LINE L1 -40 6130 5755 2060 105 3 59 chr15 8309360 8309683 -77386071 - AluSg SINE Alu -5 305 1 1786 244 89 21 chr15 8309683 8309718 -77386036 - L1ME3A LINE L1 -415 5755 5724 297 0 0 0 chr15 8309718 8309751 -77386003 + (CA)n Simple_repeat Simple_repeat 2 34 0 1786 244 89 21 chr15 8309751 8309961 -77385793 - L1ME3A LINE L1 -446 5724 5436 204 40 0 0 chr15 8309965 8309990 -77385764 + (TCCCC)n Simple_repeat Simple_repeat 4 28 0 316 323 120 32 chr15 8310046 8310387 -77385367 - L1M4c LINE L1 -1205 1538 937 3812 201 11 62 chr15 8310438 8310638 -77385116 - L1MB8 LINE L1 -45 6133 5925 1594 164 20 30 chr15 8310638 8310942 -77384812 - AluJb SINE Alu -11 301 1 3812 201 11 62 chr15 8310942 8311803 -77383951 - L1MB8 LINE L1 -253 5925 5122 2348 88 3 0 chr15 8311955 8312263 -77383491 - AluY SINE Alu -2 309 1 238 321 101 0 chr15 8312472 8312581 -77383173 - LTR33A LTR ERVL -16 507 388 2132 192 11 8 chr15 8312629 8312993 -77382761 - MLT1A1 LTR MaLR 0 365 1 244 231 39 108 chr15 8313208 8313338 -77382416 - LTR33A LTR ERVL -365 158 38 1740 133 0 4 chr15 8313693 8313956 -77381798 + AluSx SINE Alu 12 273 -39 279 284 88 14 chr15 8314242 8314390 -77381364 + MER103 DNA DNA 1 159 -7 1528 212 164 15 chr15 8315209 8315606 -77380148 - MLT1F1 LTR MaLR -2 565 110 31 26 0 0 chr15 8315926 8315964 -77379790 + AT_rich Low_complexity Low_complexity 1 38 0 668 148 40 0 chr15 8316201 8316302 -77379452 + FLAM_C SINE Alu 7 111 -32 2040 141 10 0 chr15 8316327 8316633 -77379121 + AluSq SINE Alu 3 311 -2 280 315 36 18 chr15 8316976 8317087 -77378667 - L2 LINE L2 0 3313 3201 630 152 128 0 chr15 8317156 8317281 -77378473 - MLT1F1 LTR MaLR -426 141 1 244 163 105 13 chr15 8317513 8317606 -77378148 + MIR SINE MIR 102 207 -55 1674 62 0 5 chr15 8319009 8319218 -77376536 - L1PA5 LINE L1 0 6154 5947 324 339 17 40 chr15 8319677 8319854 -77375900 + MIR SINE MIR 21 193 -69 1831 94 4 0 chr15 8319953 8320208 -77375546 + AluSx SINE Alu 57 312 0 928 112 0 0 chr15 8321705 8321830 -77373924 - AluSq/x SINE Alu -188 125 1 189 306 16 0 chr15 8321959 8322021 -77373733 + MIR3 SINE MIR 122 184 -24 2180 160 28 21 chr15 8322805 8323192 -77372562 + MLT1B LTR MaLR 1 390 0 381 328 73 35 chr15 8324473 8324705 -77371049 - HERV16 LTR ERVL -4211 785 545 801 338 21 68 chr15 8325005 8325490 -77370264 + HERV16 LTR ERVL 1110 1571 -3425 1024 173 26 30 chr15 8325527 8325819 -77369935 + L1MB7 LINE L1 5726 6148 -36 1646 254 98 27 chr15 8325844 8326367 -77369387 + HERV16 LTR ERVL 1712 2271 -2725 775 144 30 30 chr15 8326369 8326484 -77369270 + AluJo/FLAM SINE Alu 1 118 -184 1943 152 0 13 chr15 8326484 8326619 -77369135 + AluJb SINE Alu 1 136 -176 2211 116 3 0 chr15 8326619 8326929 -77368825 + AluSp SINE Alu 2 312 -1 1943 152 0 13 chr15 8326929 8327108 -77368646 + AluJb SINE Alu 136 311 -1 775 144 30 30 chr15 8327108 8327124 -77368630 + AluJo/FLAM SINE Alu 117 132 -170 21 57 0 0 chr15 8327142 8327177 -77368577 + AT_rich Low_complexity Low_complexity 1 35 0 1811 318 26 46 chr15 8327194 8328083 -77367671 + HERV16 LTR ERVL 2309 3091 -1905 367 331 20 67 chr15 8328105 8328359 -77367395 + HERV16 LTR ERVL 3595 3836 -1928 216 0 0 0 chr15 8328557 8328581 -77367173 + (A)n Simple_repeat Simple_repeat 1 24 0 404 318 47 25 chr15 8328586 8328804 -77366950 - L1MEc LINE L1 -3927 2482 2237 2714 142 49 0 chr15 8329025 8329433 -77366321 + MSTC LTR MaLR 1 428 0 378 347 140 0 chr15 8329456 8329649 -77366105 - L1MEc LINE L1 -4579 1984 1765 5409 110 10 22 chr15 8329973 8330533 -77365221 + L1MA5A LINE L1 5489 6037 -260 2058 121 3 10 chr15 8330533 8330838 -77364916 + AluSx SINE Alu 1 303 -9 5409 110 10 22 chr15 8330838 8331096 -77364658 + L1MA5A LINE L1 6037 6297 0 21 57 0 0 chr15 8331096 8331131 -77364623 + AT_rich Low_complexity Low_complexity 1 35 0 361 263 11 21 chr15 8331728 8331823 -77363931 + MER91A DNA MER1_type 1 94 -102 303 261 34 11 chr15 8332960 8333048 -77362706 + L2 LINE L2 3134 3223 -49 199 289 24 48 chr15 8333170 8333253 -77362501 + MIR SINE MIR 89 169 -93 1771 171 0 7 chr15 8333356 8333654 -77362100 + AluJb SINE Alu 1 296 -16 1396 227 98 102 chr15 8333860 8334398 -77361356 + MLT1F LTR MaLR 7 542 0 733 273 131 41 chr15 8335171 8335753 -77360001 - HAL1 LINE L1 0 2507 1874 2200 316 86 31 chr15 8335764 8336518 -77359236 - HAL1 LINE L1 -694 1813 955 2077 92 4 0 chr15 8336518 8336791 -77358963 - AluSx SINE Alu -38 274 1 2200 316 86 31 chr15 8336791 8337340 -77358414 - HAL1 LINE L1 -1552 955 438 329 276 0 0 chr15 8337585 8337661 -77358093 + MIR SINE MIR 119 194 -68 2340 86 0 0 chr15 8338564 8338868 -77356886 + AluSc SINE Alu 1 304 -5 1878 112 0 14 chr15 8338875 8339153 -77356601 + AluSx SINE Alu 39 312 0 2056 115 13 16 chr15 8339886 8340198 -77355556 + AluSx SINE Alu 1 311 -1 738 191 26 32 chr15 8340288 8340598 -77355156 - MLT1A1 LTR MaLR -1 364 1 311 307 98 53 chr15 8340670 8340779 -77354975 - L1MC4a LINE L1 -1876 5932 5829 2091 115 6 53 chr15 8340779 8341100 -77354654 - AluSq SINE Alu -7 306 1 311 307 98 53 chr15 8341100 8341234 -77354520 - L1MC4a LINE L1 -1979 5829 5678 362 265 66 10 chr15 8341347 8341543 -77354211 - L1MC4a LINE L1 -2322 5486 5280 414 0 0 0 chr15 8341834 8341880 -77353874 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 167 7 0 chr15 8341880 8342162 -77353592 - AluSx SINE Alu -28 284 1 1185 129 4 117 chr15 8342396 8342660 -77353094 + LTR12 LTR ERV1 1 234 -480 275 149 0 0 chr15 8342717 8342764 -77352990 + LTR12 LTR ERV1 228 274 -440 233 274 0 0 chr15 8342794 8342867 -77352887 + LTR30 LTR ERV1 552 624 -98 558 217 58 0 chr15 8342867 8342987 -77352767 + LTR12 LTR ERV1 359 485 -229 1955 117 11 3 chr15 8343398 8343681 -77352073 + AluSg SINE Alu 15 299 -11 3960 83 18 2 chr15 8343776 8344321 -77351433 - MER41A LTR ERV1 0 554 1 355 206 29 0 chr15 8345788 8345856 -77349898 - MER8 DNA MER2_type 0 239 170 * 2210 143 88 7 chr15 8345839 8346257 -77349497 + Tigger2 DNA MER2_type 2267 2718 0 568 205 93 12 chr15 8346888 8347049 -77348705 - Charlie1b DNA MER1_type -24 499 326 938 82 16 0 chr15 8347058 8347180 -77348574 + AluSp SINE Alu 2 125 -188 277 114 0 0 chr15 8347363 8347407 -77348347 - MADE1 DNA Mariner -36 44 1 214 239 0 0 chr15 8347433 8347479 -77348275 - L2 LINE L2 -13 3300 3255 1240 279 42 18 chr15 8347746 8348180 -77347574 - L1ME1 LINE L1 -5 6161 5718 640 211 35 99 chr15 8348729 8348961 -77346793 - Charlie1b DNA MER1_type -305 218 2 403 291 117 45 chr15 8348971 8349150 -77346604 + HAL1 LINE L1 818 1009 -1498 * 467 289 179 7 chr15 8349120 8349393 -77346361 + L1MC/D LINE L1 4240 4559 -1587 2063 155 0 15 chr15 8349495 8349837 -77345917 - MER1B DNA MER1_type 0 337 1 354 312 65 13 chr15 8349844 8349998 -77345756 + L1MC/D LINE L1 5173 5334 -812 225 0 171 0 chr15 8350127 8350162 -77345592 - MLT2D LTR ERVL 0 515 475 293 264 24 24 chr15 8350165 8350290 -77345464 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1642 196 32 51 chr15 8350325 8350605 -77345149 - MLT2D LTR ERVL -45 369 85 2082 105 22 0 chr15 8350605 8350872 -77344882 + AluSx SINE Alu 3 275 -37 204 40 0 0 chr15 8350875 8350900 -77344854 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1642 196 32 51 chr15 8350900 8350988 -77344766 - MLT2D LTR ERVL -331 83 4 279 272 99 27 chr15 8351126 8351292 -77344462 - MLT1J1 LTR MaLR -279 167 31 678 167 9 0 chr15 8351303 8351411 -77344343 - FLAM_C SINE Alu -20 123 15 272 178 56 56 chr15 8351430 8351520 -77344234 + L1MC/D LINE L1 5393 5482 -2326 235 250 16 0 chr15 8351799 8351863 -77343891 + MER115 DNA AcHobo 180 244 -449 2312 103 7 0 chr15 8352040 8352342 -77343412 + AluSg SINE Alu 1 304 -6 720 276 75 13 chr15 8352459 8352698 -77343056 + MIR SINE MIR 9 262 0 329 328 0 17 chr15 8353432 8353548 -77342206 + C-rich Low_complexity Low_complexity 5 118 0 424 117 0 72 chr15 8353551 8353662 -77342092 + (CCCCCT)n Simple_repeat Simple_repeat 6 108 0 22 0 0 0 chr15 8354047 8354069 -77341685 + GC_rich Low_complexity Low_complexity 1 22 0 2483 80 0 0 chr15 8355625 8355927 -77339827 - AluY SINE Alu -9 302 1 2301 92 7 0 chr15 8356074 8356369 -77339385 - AluSp SINE Alu -16 297 1 255 339 31 63 chr15 8357286 8357413 -77338341 + MIR3 SINE MIR 15 137 -71 1788 191 0 6 chr15 8357467 8357943 -77337811 - AluJb SINE Alu 0 474 1 464 230 34 39 chr15 8357993 8358171 -77337583 - L1MC5 LINE L1 -70 7891 7715 929 255 97 47 chr15 8358188 8358569 -77337185 - MLT1H LTR MaLR -43 506 107 1468 197 60 161 chr15 8358674 8358906 -77336848 - L1MC5 LINE L1 -262 7699 7445 2018 159 0 3 chr15 8358906 8359208 -77336546 - AluSx SINE Alu -9 303 3 1468 197 60 161 chr15 8359208 8359523 -77336231 - L1MC5 LINE L1 -516 7445 7100 2454 97 3 0 chr15 8359523 8359832 -77335922 - AluSx SINE Alu -2 310 1 1468 197 60 161 chr15 8359832 8360457 -77335297 - L1MC5 LINE L1 -861 7100 6645 237 244 77 51 chr15 8360733 8360889 -77334865 - L1MC4a LINE L1 -1614 6194 6035 2419 78 10 0 chr15 8361128 8361421 -77334333 - AluSx SINE Alu -14 298 3 1305 174 154 48 chr15 8361444 8361496 -77334258 - MSTD LTR MaLR -2 394 349 2111 133 3 7 chr15 8361496 8361796 -77333958 - AluSx SINE Alu -13 299 1 1305 174 154 48 chr15 8361796 8362099 -77333655 - MSTD LTR MaLR -47 349 1 1079 227 61 14 chr15 8363582 8363926 -77331828 - MER69 DNA AcHobo -1 2525 2166 866 217 28 0 chr15 8363926 8364106 -77331648 - MER58A DNA MER1_type 0 224 40 786 194 47 56 chr15 8364152 8364237 -77331517 - MER69 DNA AcHobo -381 2145 2061 2456 81 0 0 chr15 8364237 8364534 -77331220 - AluY SINE Alu -14 297 1 786 194 47 56 chr15 8364534 8364680 -77331074 - MER69 DNA AcHobo -465 2061 1916 * 800 266 56 0 chr15 8364676 8364890 -77330864 - MER69 DNA AcHobo -1591 935 710 2156 178 116 65 chr15 8365506 8366033 -77329721 + MLT2B3 LTR ERVL 1 554 0 468 286 86 45 chr15 8367576 8367803 -77327951 + MIR SINE MIR 17 261 -1 357 24 0 0 chr15 8369139 8369181 -77326573 + (CA)n Simple_repeat Simple_repeat 2 43 0 1995 125 12 64 chr15 8370054 8370383 -77325371 + AluSx SINE Alu 1 312 0 304 330 124 29 chr15 8370408 8370519 -77325235 + HAL1 LINE L1 880 979 -1528 1282 164 122 73 chr15 8370519 8370946 -77324808 - LTR7 LTR ERV1 -2 448 1 304 330 124 29 chr15 8370946 8371218 -77324536 + HAL1 LINE L1 979 1302 -1205 217 204 37 0 chr15 8371634 8371688 -77324066 + GA-rich Low_complexity Low_complexity 4 59 0 266 328 59 8 chr15 8371794 8371913 -77323841 - MIR SINE MIR -131 131 7 2556 77 0 0 chr15 8372455 8372766 -77322988 + AluY SINE Alu 1 311 0 554 380 123 0 chr15 8372768 8373100 -77322654 + L1MC4a LINE L1 4143 4515 -1631 2476 71 7 7 chr15 8373119 8373428 -77322326 - AluSc SINE Alu 0 309 1 312 285 166 40 chr15 8373450 8373601 -77322153 + L1MC4a LINE L1 5550 5719 -402 430 239 29 116 chr15 8373644 8373921 -77321833 + L1MC4a LINE L1 5707 5963 -158 2130 96 36 0 chr15 8373938 8374219 -77321535 - AluSx SINE Alu -17 295 5 29 70 0 0 chr15 8374369 8374426 -77321328 + AT_rich Low_complexity Low_complexity 1 57 0 645 178 8 0 chr15 8374426 8374544 -77321210 - FLAM_C SINE Alu -14 119 1 852 268 105 32 chr15 8374622 8375148 -77320606 - HAL1 LINE L1 -85 2422 1859 2467 71 10 0 chr15 8375491 8375938 -77319816 + AluY SINE Alu 1 450 0 287 360 0 0 chr15 8376259 8376412 -77319342 + CT-rich Low_complexity Low_complexity 2 154 0 2919 13 0 0 chr15 8376796 8377105 -77318649 + AluYb8 SINE Alu 1 309 -9 1366 237 59 3 chr15 8377629 8377950 -77317804 - MER70A LTR ERVL -130 342 4 1018 217 5 0 chr15 8378848 8379051 -77316703 - MLT1B LTR MaLR -11 379 176 1108 146 29 0 chr15 8379051 8379222 -77316532 - FRAM SINE Alu -3 173 1 779 213 30 0 chr15 8379226 8379395 -77316359 - MLT1B LTR MaLR -213 177 4 1308 204 19 94 chr15 8380750 8381166 -77314588 - MLT1B LTR MaLR -5 385 1 260 212 24 0 chr15 8381333 8381418 -77314336 + (CATAT)n Simple_repeat Simple_repeat 4 90 0 606 195 29 6 chr15 8381433 8381607 -77314147 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 558 227 80 25 chr15 8382162 8382325 -77313429 - MER69A DNA AcHobo -5 172 1 365 216 21 0 chr15 8383375 8383472 -77312282 + (CATAT)n Simple_repeat Simple_repeat 5 103 0 2289 111 0 0 chr15 8383672 8383969 -77311785 - AluSx SINE Alu -15 297 1 25 0 0 0 chr15 8384199 8384224 -77311530 + AT_rich Low_complexity Low_complexity 1 25 0 2125 116 17 0 chr15 8384885 8385177 -77310577 - AluSg SINE Alu -13 297 1 216 279 18 6 chr15 8385493 8385604 -77310150 - MER5A DNA MER1_type 0 189 12 388 272 73 15 chr15 8386517 8386653 -77309101 + MER69 DNA AcHobo 6 149 -2377 343 194 15 0 chr15 8386670 8386737 -77309017 - MLT1G1 LTR MaLR 0 595 528 4906 229 47 36 chr15 8386743 8387786 -77307968 + L1MDb LINE L1 8 1069 -5340 2150 147 0 10 chr15 8387786 8388099 -77307655 - AluSx SINE Alu -2 310 1 4906 229 47 36 chr15 8388099 8388368 -77307386 + L1MDb LINE L1 1069 1334 -5075 2335 126 0 0 chr15 8388378 8388688 -77307066 + AluSg SINE Alu 1 310 0 656 291 12 8 chr15 8388688 8388929 -77306825 + L1MDb LINE L1 2776 3017 -3389 1354 165 40 144 chr15 8389170 8389474 -77306280 - Zaphod DNA AcHobo -238 3793 3459 213 39 0 0 chr15 8389474 8389500 -77306254 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1354 165 40 144 chr15 8389500 8389523 -77306231 - Zaphod DNA AcHobo -572 3459 3435 1821 118 19 23 chr15 8389523 8389785 -77305969 - AluSx SINE Alu -51 261 1 1354 165 40 144 chr15 8389785 8390025 -77305729 - Zaphod DNA AcHobo -596 3435 3284 327 246 77 62 chr15 8390225 8390355 -77305399 + L1MCa LINE L1 1933 2064 -4362 256 24 49 0 chr15 8390357 8390398 -77305356 + (TA)n Simple_repeat Simple_repeat 1 43 0 2427 65 0 40 chr15 8390399 8390723 -77305031 - AluY SINE Alu 0 311 1 239 325 83 17 chr15 8390729 8390849 -77304905 - L1MEd LINE L1 -5496 623 496 586 164 61 73 chr15 8390851 8391089 -77304665 + MLT1E3 LTR MaLR 1 285 -369 2853 106 27 12 chr15 8391135 8391549 -77304205 + MSTA LTR MaLR 1 420 -8 1017 226 41 79 chr15 8391556 8391781 -77303973 + MLT1E3 LTR MaLR 292 501 -123 2261 93 3 0 chr15 8391781 8392082 -77303672 - AluSp SINE Alu -11 302 1 1017 226 41 79 chr15 8392082 8392196 -77303558 + MLT1E3 LTR MaLR 501 618 -6 727 216 117 47 chr15 8393230 8393615 -77302139 + MLT1G3 LTR MaLR 68 483 -107 3910 162 33 7 chr15 8393655 8394385 -77301369 - L1MD1 LINE L1 0 6242 5494 2790 144 44 6 chr15 8394393 8394872 -77300882 - L1MB2 LINE L1 -4 6167 5671 198 0 0 0 chr15 8394880 8394902 -77300852 + (TA)n Simple_repeat Simple_repeat 2 23 0 1999 109 0 7 chr15 8394905 8395189 -77300565 - AluSq SINE Alu -31 282 1 5928 214 36 48 chr15 8395202 8395394 -77300360 - L1MD1 LINE L1 -1949 4197 4004 1876 134 7 0 chr15 8395394 8395671 -77300083 - AluSx SINE Alu -17 295 17 5928 214 36 48 chr15 8395671 8397126 -77298628 - L1MD1 LINE L1 -2142 4004 2571 2576 125 72 5 chr15 8397126 8397527 -77298227 - MSTA LTR MaLR 0 428 1 5928 214 36 48 chr15 8397527 8397705 -77298049 - L1MD1 LINE L1 -3575 2571 2392 5361 135 5 24 chr15 8397705 8398868 -77296886 + L1PA16 LINE L1 5015 6160 -6 297 230 95 32 chr15 8399017 8399143 -77296611 - L1M3d LINE L1 -5756 135 2 * 3239 223 115 91 chr15 8399135 8399617 -77296137 - L1MB2 LINE L1 -743 5403 4934 1711 166 3 19 chr15 8399617 8399930 -77295824 - AluJo SINE Alu -2 310 3 3239 223 115 91 chr15 8399930 8400152 -77295602 - L1MB2 LINE L1 -1212 4934 4719 1492 156 26 22 chr15 8400152 8400422 -77295332 - AluJo SINE Alu -30 282 12 3239 223 115 91 chr15 8400422 8400526 -77295228 - L1MB2 LINE L1 -1427 4719 4619 424 60 0 230 chr15 8400526 8400573 -77295181 + MADE1 DNA Mariner 4 18 -62 9727 62 6 76 chr15 8400573 8402063 -77293691 - SVA Other Other 0 1386 1 424 60 0 230 chr15 8402063 8402115 -77293639 + MADE1 DNA Mariner 18 80 0 3239 223 115 91 chr15 8402115 8402827 -77292927 - L1MB2 LINE L1 -1527 4619 3926 2194 149 86 8 chr15 8402827 8403224 -77292530 + MSTA LTR MaLR 1 428 0 3239 223 115 91 chr15 8403224 8403274 -77292480 - L1MB2 LINE L1 -2220 3926 3879 704 187 8 0 chr15 8403274 8403397 -77292357 + FLAM_C SINE Alu 6 129 -14 3239 223 115 91 chr15 8403397 8404361 -77291393 - L1MB2 LINE L1 -2267 3879 2751 1078 215 106 8 chr15 8404368 8404624 -77291130 + AluJo SINE Alu 9 289 -23 438 271 8 0 chr15 8404629 8404751 -77291003 - L1MB2 LINE L1 -3389 2757 2635 496 250 45 82 chr15 8404895 8405115 -77290639 - L1M4 LINE L1 -1986 4160 3949 207 0 0 0 chr15 8405205 8405228 -77290526 + (T)n Simple_repeat Simple_repeat 1 23 0 397 279 50 95 chr15 8405254 8405443 -77290311 - L1M4 LINE L1 -2230 3916 3747 1093 142 296 9 chr15 8405443 8405676 -77290078 - AluYa5 SINE Alu -1 300 1 397 279 50 95 chr15 8405676 8405823 -77289931 - L1M4 LINE L1 -2399 3747 3595 202 307 23 23 chr15 8406576 8406664 -77289090 - L2 LINE L2 -1323 1991 1904 975 260 157 34 chr15 8406673 8407239 -77288515 + L2 LINE L2 2369 3088 -225 1833 49 4 0 chr15 8407239 8407465 -77288289 - AluY SINE Alu -4 307 81 975 260 157 34 chr15 8407465 8407714 -77288040 + L2 LINE L2 3088 3305 -8 201 337 34 11 chr15 8410007 8410096 -77285658 + MIR3 SINE MIR 107 197 -11 3294 116 65 35 chr15 8410734 8411149 -77284605 + MER41C LTR ERV1 2 438 -116 2330 83 0 0 chr15 8411149 8411450 -77284304 - AluY SINE Alu -10 301 1 3294 116 65 35 chr15 8411450 8411571 -77284183 + MER41C LTR ERV1 438 554 0 443 294 101 24 chr15 8412326 8412574 -77283180 + L1ME3A LINE L1 5618 5884 -286 1651 143 52 11 chr15 8412583 8412870 -77282884 + AluJb SINE Alu 1 299 -13 4288 147 20 33 chr15 8412966 8413575 -77282179 - MER4E LTR ERV1 0 779 181 2196 108 3 0 chr15 8413575 8413882 -77281872 - AluSx SINE Alu -4 308 1 4288 147 20 33 chr15 8413882 8414061 -77281693 - MER4E LTR ERV1 -598 181 1 207 204 0 0 chr15 8414073 8414117 -77281637 + CT-rich Low_complexity Low_complexity 2 45 0 5004 88 44 0 chr15 8414707 8415369 -77280385 - LTR8 LTR ERV1 0 691 1 866 256 75 17 chr15 8415515 8415808 -77279946 - MER5C DNA MER1_type -8 316 7 4244 127 116 83 chr15 8415930 8416174 -77279580 - MER4D LTR ERV1 0 872 638 1877 148 3 0 chr15 8416174 8416464 -77279290 + AluSx SINE Alu 1 291 -21 4244 127 116 83 chr15 8416464 8416855 -77278899 - MER4D LTR ERV1 -234 638 200 1764 159 3 3 chr15 8416855 8417138 -77278616 + AluJb SINE Alu 1 283 -29 4244 127 116 83 chr15 8417138 8417345 -77278409 - MER4D LTR ERV1 -672 200 1 3768 106 23 25 chr15 8418560 8419065 -77276689 - MER61E LTR ERV1 0 569 64 2159 120 3 0 chr15 8419065 8419373 -77276381 + AluSg SINE Alu 2 310 0 3768 106 23 25 chr15 8419373 8419433 -77276321 - MER61E LTR ERV1 -505 64 5 470 143 95 0 chr15 8419522 8419606 -77276148 - MER103 DNA DNA -44 122 31 2408 38 20 0 chr15 8419979 8420271 -77275483 + AluY SINE Alu 1 298 -13 202 0 91 0 chr15 8421773 8421806 -77273948 + T-rich Low_complexity Low_complexity 5 40 0 314 260 197 16 chr15 8422198 8422325 -77273429 + MIR3 SINE MIR 7 156 -52 239 195 0 91 chr15 8422523 8422600 -77273154 - L2 LINE L2 -9 3263 3194 2558 153 11 68 chr15 8422601 8422796 -77272958 - LTR54 LTR ERV1 0 510 305 2204 94 3 3 chr15 8422796 8423093 -77272661 - AluSp SINE Alu -16 297 1 2558 153 11 68 chr15 8423093 8423438 -77272316 - LTR54 LTR ERV1 -205 305 1 1764 164 55 7 chr15 8423438 8423748 -77272006 - MER89-int LTR ERV1 -393 7144 6820 1110 101 5 101 chr15 8423760 8423977 -77271777 - MER30 DNA MER1_type -33 197 2 464 293 107 19 chr15 8423979 8424194 -77271560 - MER89-int LTR ERV1 -712 6825 6592 338 197 0 0 chr15 8424249 8424310 -77271444 - MER89-int LTR ERV1 -697 4174 4114 4813 193 108 65 chr15 8424355 8424782 -77270972 - MER89-int LTR ERV1 -514 5817 5410 2283 92 0 0 chr15 8424782 8425085 -77270669 + AluSp SINE Alu 1 303 -10 4813 193 108 65 chr15 8425085 8425340 -77270414 - MER89-int LTR ERV1 -921 5410 5168 1562 173 20 13 chr15 8425340 8425641 -77270113 - AluJb SINE Alu -9 303 1 4813 193 108 65 chr15 8425641 8426087 -77269667 - MER89-int LTR ERV1 -1163 5168 4743 1665 127 31 55 chr15 8426087 8426428 -77269326 + AluSx SINE Alu 1 334 0 4813 193 108 65 chr15 8426428 8427492 -77268262 - MER89-int LTR ERV1 -1588 4743 2391 523 178 207 7 chr15 8427503 8427638 -77268116 - MER34C LTR ERV1 -255 330 169 706 190 0 36 chr15 8427723 8427860 -77267894 - AluJo SINE Alu -178 134 3 321 226 36 24 chr15 8427867 8427951 -77267803 - MER89-int LTR ERV1 -3352 2911 2827 722 209 62 67 chr15 8427994 8428391 -77267363 - MER89-int LTR ERV1 -2696 2427 1719 1738 219 62 68 chr15 8428405 8428669 -77267085 - MER89-int LTR ERV1 -2946 2278 2014 1834 136 0 34 chr15 8428669 8428987 -77266767 + AluSx SINE Alu 1 308 0 2304 141 34 69 chr15 8428997 8429391 -77266363 - MSTB1 LTR MaLR 0 432 54 2027 105 0 43 chr15 8429391 8429716 -77266038 - AluSx SINE Alu -1 311 1 2304 141 34 69 chr15 8429716 8429769 -77265985 - MSTB1 LTR MaLR -378 54 1 1738 219 62 68 chr15 8429769 8430568 -77265186 - MER89-int LTR ERV1 -3219 2005 1193 307 247 0 14 chr15 8430621 8430694 -77265060 + MER57-int LTR ERV1 548 619 -6918 325 279 110 41 chr15 8430774 8430993 -77264761 - MER34C LTR ERV1 -192 393 160 186 43 0 0 chr15 8431079 8431102 -77264652 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 822 153 0 0 chr15 8431107 8431225 -77264529 - FLAM_C SINE Alu -15 118 1 262 281 42 13 chr15 8431225 8431327 -77264427 - MER89-int LTR ERV1 -3220 2726 829 317 239 53 62 chr15 8431820 8431933 -77263821 - MER89-int LTR ERV1 -5432 1369 1258 272 228 17 173 chr15 8432157 8432446 -77263308 - MER89-int LTR ERV1 -6761 776 533 700 281 106 33 chr15 8432565 8432867 -77262887 - MER89-int LTR ERV1 -4079 2252 1929 1531 145 71 74 chr15 8432897 8433234 -77262520 - LTR54 LTR ERV1 0 510 175 2463 144 58 5 chr15 8433839 8434249 -77261505 - MSTB1 LTR MaLR 0 432 1 33 0 0 0 chr15 8434350 8434383 -77261371 + AT_rich Low_complexity Low_complexity 1 33 0 301 134 0 45 chr15 8434383 8434450 -77261304 - L1MA8 LINE L1 -3 6288 6225 3058 142 21 56 chr15 8434632 8434787 -77260967 - MER34C LTR ERV1 -2 583 424 2088 92 27 14 chr15 8434787 8435082 -77260672 - AluSp SINE Alu -14 299 1 3058 142 21 56 chr15 8435082 8435530 -77260224 - MER34C LTR ERV1 -161 424 1 267 182 182 0 chr15 8435591 8435646 -77260108 - MIR3 SINE MIR -52 156 92 190 236 138 49 chr15 8435840 8435963 -77259791 + L2 LINE L2 3094 3227 -86 1593 139 66 0 chr15 8436101 8436374 -77259380 - AluSx SINE Alu -9 303 13 310 146 0 18 chr15 8436376 8436431 -77259323 - AluSq/x SINE Alu -163 139 86 1171 149 33 14 chr15 8436433 8436647 -77259107 - AluSx SINE Alu -94 218 1 2672 100 11 0 chr15 8436773 8437133 -77258621 - THE1B LTR MaLR 0 364 1 2925 168 163 7 chr15 8438197 8438774 -77256980 - Tigger7 DNA MER2_type -1820 667 1 3805 147 11 72 chr15 8438802 8439538 -77256216 - LTR8 LTR ERV1 0 691 1 189 226 43 32 chr15 8439818 8439881 -77255873 - MIR SINE MIR -97 165 103 356 179 15 0 chr15 8440204 8440271 -77255483 - MER116 DNA Mariner 0 80 13 864 227 23 0 chr15 8440904 8441076 -77254678 - MER45A DNA AcHobo -2 176 1 226 301 41 0 chr15 8441761 8441834 -77253920 + MIR SINE MIR 45 120 -88 202 255 157 0 chr15 8442700 8442751 -77253003 + MIR SINE MIR 93 151 -111 2015 115 0 11 chr15 8442805 8443120 -77252634 - AluSx SINE Alu 0 312 1 497 239 30 138 chr15 8443446 8443642 -77252112 - L1M4 LINE L1 -3467 2679 2463 2082 122 0 3 chr15 8443642 8443953 -77251801 - AluSx SINE Alu -2 310 1 497 239 30 138 chr15 8443953 8444045 -77251709 - L1M4 LINE L1 -3683 2463 2423 2769 10 0 0 chr15 8444045 8444353 -77251401 - AluYa5 SINE Alu -3 308 1 497 239 30 138 chr15 8444353 8444368 -77251386 - L1M4 LINE L1 -3723 2423 2408 11323 214 59 60 chr15 8444373 8444594 -77251160 - L1MC2 LINE L1 -15 6609 6389 2208 104 0 13 chr15 8444594 8444910 -77250844 - AluSx SINE Alu 0 312 1 11323 214 59 60 chr15 8444910 8445127 -77250627 - L1MC2 LINE L1 -235 6389 6173 1910 148 0 3 chr15 8445127 8445430 -77250324 - AluSx SINE Alu -10 302 1 11323 214 59 60 chr15 8445430 8445494 -77250260 - L1MC2 LINE L1 -451 6173 6110 1652 150 0 4 chr15 8445494 8445771 -77249983 - AluSx SINE Alu 0 305 30 11323 214 59 60 chr15 8445771 8448553 -77247201 - L1MC2 LINE L1 -514 6110 3326 2021 121 7 0 chr15 8448553 8448850 -77246904 - AluSg1 SINE Alu -5 304 6 11323 214 59 60 chr15 8448850 8450527 -77245227 - L1MC2 LINE L1 -3298 3326 1648 2241 80 0 3 chr15 8450527 8450844 -77244910 - AluSp SINE Alu 0 316 1 11323 214 59 60 chr15 8450844 8450868 -77244886 - L1MC2 LINE L1 -4976 1648 1625 1222 167 32 137 chr15 8450868 8451276 -77244478 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8451276 8451511 -77244243 - L1MC2 LINE L1 -4999 1625 1391 2050 106 13 16 chr15 8451511 8451823 -77243931 - AluSx SINE Alu -1 311 1 11323 214 59 60 chr15 8451823 8452102 -77243652 - L1MC2 LINE L1 -5233 1391 1113 306 0 0 0 chr15 8452102 8452136 -77243618 + (TG)n Simple_repeat Simple_repeat 2 35 0 2074 123 0 10 chr15 8452137 8452302 -77243452 - AluSx SINE Alu -13 299 137 2204 95 0 0 chr15 8452302 8452598 -77243156 - AluSq SINE Alu -17 296 1 2074 123 0 10 chr15 8452598 8452734 -77243020 - AluSx SINE Alu -175 137 1 11323 214 59 60 chr15 8452734 8453164 -77242590 - L1MC2 LINE L1 -5511 1113 684 1776 138 22 0 chr15 8453164 8453475 -77242279 - AluSq SINE Alu 0 318 2 11323 214 59 60 chr15 8453475 8453673 -77242081 - L1MC2 LINE L1 -5940 684 487 1855 188 34 11 chr15 8453673 8454030 -77241724 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8454030 8454495 -77241259 - L1MC2 LINE L1 -6137 487 2 1949 124 0 10 chr15 8454540 8454830 -77240924 - AluSx SINE Alu -25 287 1 532 313 86 4 chr15 8454890 8455168 -77240586 - L1MEc LINE L1 -4579 1817 1517 1061 165 0 0 chr15 8455288 8455464 -77240290 + AluJo SINE Alu 119 294 -18 572 289 89 91 chr15 8455695 8456337 -77239417 + L2 LINE L2 2645 3313 0 1339 174 113 43 chr15 8456933 8457077 -77238677 - AluJo SINE Alu 0 302 170 2169 92 3 10 chr15 8457077 8457383 -77238371 - AluSg SINE Alu -6 304 1 1339 174 113 43 chr15 8457383 8457520 -77238234 - AluJo SINE Alu -132 170 1 545 284 97 40 chr15 8457865 8458341 -77237413 - HAL1 LINE L1 -1191 1316 814 1656 145 55 3 chr15 8459179 8459489 -77236265 + L1MA7 LINE L1 5960 6285 -6 2158 102 0 0 chr15 8459557 8459874 -77235880 + AluSx SINE Alu 1 317 0 2914 167 33 0 chr15 8459983 8460497 -77235257 - L1MB3 LINE L1 -101 6082 5552 512 273 32 18 chr15 8460615 8460835 -77234919 - L1MEc LINE L1 -4849 1547 1325 * 2340 73 22 3 chr15 8460833 8461150 -77234604 + L1PA13 LINE L1 5725 6047 -116 2515 116 108 28 chr15 8461150 8461583 -77234171 + LTR12 LTR ERV1 1 468 -246 439 209 69 0 chr15 8461613 8461727 -77234027 + L1PA13 LINE L1 6041 6161 -2 733 176 25 6 chr15 8462379 8462538 -77233216 + MER103 DNA DNA 3 164 -2 1775 110 24 0 chr15 8462825 8463079 -77232675 - AluSp SINE Alu -53 260 1 316 200 24 0 chr15 8464356 8464441 -77231313 + GA-rich Low_complexity Low_complexity 2 88 0 2118 106 0 10 chr15 8465565 8465866 -77229888 - AluSx SINE Alu -14 298 1 224 146 0 21 chr15 8465868 8465916 -77229838 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 517 68 0 0 chr15 8465917 8465991 -77229763 - Alu SINE Alu 0 311 238 1868 102 0 0 chr15 8466094 8466348 -77229406 + AluSx SINE Alu 55 308 -4 3015 217 39 18 chr15 8466353 8467193 -77228561 + L1MC5 LINE L1 2842 3699 -2447 1974 249 107 89 chr15 8467201 8467763 -77227991 + L1MC5 LINE L1 5425 5975 -1986 2163 108 10 0 chr15 8467763 8468068 -77227686 + AluSq SINE Alu 1 308 -5 1974 249 107 89 chr15 8468068 8468725 -77227029 + L1MC5 LINE L1 5975 6619 -1342 366 42 0 0 chr15 8468725 8468773 -77226981 + (CA)n Simple_repeat Simple_repeat 1 48 0 1974 249 107 89 chr15 8468773 8469305 -77226449 + L1MC5 LINE L1 6619 7184 -777 2421 65 0 3 chr15 8469305 8469612 -77226142 + AluY SINE Alu 1 306 -5 1974 249 107 89 chr15 8469612 8469813 -77225941 + L1MC5 LINE L1 7184 7380 -581 2183 101 0 0 chr15 8470358 8470654 -77225100 - AluSx SINE Alu -2 310 15 783 219 193 0 chr15 8470660 8470898 -77224856 - MER33 DNA MER1_type -40 284 1 215 245 163 10 chr15 8471587 8471685 -77224069 + MIR SINE MIR 36 148 -114 250 245 324 0 chr15 8473191 8473293 -77222461 + L1ME4a LINE L1 5530 5664 -457 239 303 0 0 chr15 8473345 8473421 -77222333 + L1ME4a LINE L1 5734 5809 -361 389 315 85 47 chr15 8473430 8473665 -77222089 + L1ME4a LINE L1 5874 6117 -4 430 135 0 0 chr15 8473679 8473753 -77222001 - L1MA4 LINE L1 -6 6294 6221 2154 92 16 3 chr15 8473824 8474128 -77221626 + AluSc SINE Alu 1 308 -1 201 94 0 0 chr15 8474780 8474812 -77220942 + (TG)n Simple_repeat Simple_repeat 2 33 0 1897 107 38 17 chr15 8475756 8476045 -77219709 - AluSx SINE Alu -17 295 1 1116 193 3 134 chr15 8476069 8476450 -77219304 - MER33 DNA MER1_type -4 320 1 306 247 82 87 chr15 8476556 8476775 -77218979 - L1ME LINE L1 -302 5819 5602 403 186 20 10 chr15 8478016 8478118 -77217636 + CT-rich Low_complexity Low_complexity 3 105 0 2157 118 0 6 chr15 8478122 8478437 -77217317 - AluSq SINE Alu 0 313 1 2244 79 0 7 chr15 8478485 8478796 -77216958 - AluSx SINE Alu 0 312 1 4653 186 27 21 chr15 8478813 8480294 -77215460 - L1MB5 LINE L1 -8 6166 4680 2033 128 3 3 chr15 8480296 8480602 -77215152 + AluSx SINE Alu 1 306 -6 442 226 182 13 chr15 8480757 8480916 -77214838 - L1MB5 LINE L1 -1729 4417 4232 2329 101 0 0 chr15 8480919 8481227 -77214527 - AluSx SINE Alu -4 308 1 728 282 114 21 chr15 8481252 8481626 -77214128 - L1ME3A LINE L1 -192 5972 5571 187 179 95 53 chr15 8481974 8482069 -77213685 + L2 LINE L2 2921 3019 -253 207 0 0 0 chr15 8482075 8482098 -77213656 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 216 0 0 0 chr15 8482353 8482377 -77213377 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 533 326 41 9 chr15 8483206 8483427 -77212327 - MIR SINE MIR -34 228 1 2147 126 0 0 chr15 8483540 8483849 -77211905 - AluSg SINE Alu -1 309 1 351 265 29 29 chr15 8484387 8484523 -77211231 - MER69A DNA AcHobo -14 163 28 508 169 169 14 chr15 8485061 8485203 -77210551 - MER96B DNA MER1_type? -241 176 13 3622 126 60 27 chr15 8485555 8486152 -77209602 - LTR12 LTR ERV1 -97 617 1 4000 167 102 20 chr15 8486195 8486653 -77209101 - L1MB3 LINE L1 0 6183 5764 2261 75 0 31 chr15 8486653 8486974 -77208780 + AluY SINE Alu 1 311 0 4000 167 102 20 chr15 8486974 8487424 -77208330 - L1MB3 LINE L1 -419 5764 5201 305 309 73 12 chr15 8489036 8489201 -77206553 - L1ME4a LINE L1 -3 6118 5944 2126 92 3 49 chr15 8489218 8489545 -77206209 + AluSx SINE Alu 1 312 0 2262 158 92 15 chr15 8489558 8490015 -77205739 + L1MB7 LINE L1 5693 6184 0 188 340 11 64 chr15 8490257 8490351 -77205403 - MIR SINE MIR -45 217 129 319 264 56 0 chr15 8491271 8491396 -77204358 + L2 LINE L2 1707 1838 -1476 195 286 0 0 chr15 8491749 8491791 -77203963 - MIR SINE MIR -115 147 106 186 254 45 0 chr15 8492624 8492691 -77203063 - L2 LINE L2 -247 3066 2997 351 230 0 66 chr15 8493451 8493603 -77202151 + G-rich Low_complexity Low_complexity 3 144 0 3183 219 109 16 chr15 8493632 8494507 -77201247 - L1MC4 LINE L1 -432 7610 6655 1314 241 92 50 chr15 8494512 8495013 -77200741 + MLT1F LTR MaLR 21 542 0 1300 226 80 12 chr15 8495019 8495355 -77200399 - L1MC4 LINE L1 -1340 6702 6344 390 150 28 39 chr15 8496294 8496474 -77199280 + (CA)n Simple_repeat Simple_repeat 1 178 0 1479 242 38 10 chr15 8498387 8498771 -77196983 + L1MB8 LINE L1 89 553 -6302 * 8233 220 52 20 chr15 8498768 8502233 -77193521 + L1MB8 LINE L1 3110 6465 -524 297 0 0 0 chr15 8502233 8502266 -77193488 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 351 0 0 0 chr15 8502265 8502304 -77193450 + (TA)n Simple_repeat Simple_repeat 1 39 0 8233 220 52 20 chr15 8502266 8502305 -77193449 + L1MB8 LINE L1 6465 6501 -488 2073 124 0 0 chr15 8502305 8502603 -77193151 - AluSx SINE Alu -14 298 1 8233 220 52 20 chr15 8502603 8502660 -77193094 + L1MB8 LINE L1 6501 6977 -12 193 187 11 66 chr15 8502669 8502760 -77192994 + GA-rich Low_complexity Low_complexity 3 88 0 1397 180 0 31 chr15 8503436 8503697 -77192057 + AluJb SINE Alu 13 265 -47 802 152 5 105 chr15 8505129 8505298 -77190456 - MER53 DNA DNA 0 189 43 2025 177 11 30 chr15 8505298 8505515 -77190239 - MLT1A1 LTR MaLR 0 365 156 2193 103 3 10 chr15 8505515 8505825 -77189929 - AluSq SINE Alu -5 308 1 2025 177 11 30 chr15 8505825 8505979 -77189775 - MLT1A1 LTR MaLR -209 156 1 802 152 5 105 chr15 8505979 8506019 -77189735 - MER53 DNA DNA -146 43 1 248 338 149 14 chr15 8506613 8506761 -77188993 - MIR SINE MIR -1 261 94 2814 181 68 10 chr15 8507252 8507843 -77187911 - L1MD1 LINE L1 0 6242 5618 206 241 19 19 chr15 8509418 8509472 -77186282 + L2 LINE L2 3214 3267 -5 201 303 117 56 chr15 8510109 8510271 -77185483 - MIR SINE MIR -59 203 32 1893 147 26 10 chr15 8510531 8510837 -77184917 + AluJb SINE Alu 1 311 -1 2234 102 0 9 chr15 8512296 8512611 -77183143 + AluSq SINE Alu 1 312 -1 348 217 15 31 chr15 8514120 8514387 -77181367 + (TG)n Simple_repeat Simple_repeat 1 262 0 1756 177 0 3 chr15 8514577 8514882 -77180872 + AluJo SINE Alu 1 304 -8 2015 118 10 14 chr15 8515188 8515485 -77180269 - AluSx SINE Alu -16 296 1 1552 158 67 64 chr15 8516194 8516568 -77179186 - THE1C LTR MaLR 0 375 1 2579 76 12 3 chr15 8516739 8517083 -77178671 - L1PA13 LINE L1 -12 6151 5805 312 317 19 0 chr15 8517212 8517316 -77178438 - HAL1 LINE L1 -711 1796 1691 591 143 0 0 chr15 8517454 8517538 -77178216 - AluS SINE Alu -228 85 2 749 158 0 0 chr15 8517553 8517680 -77178074 - L1M4 LINE L1 -1117 5029 4903 908 339 128 17 chr15 8517821 8518534 -77177220 - L2 LINE L2 -564 2750 1959 264 325 17 8 chr15 8519241 8519358 -77176396 + (TG)n Simple_repeat Simple_repeat 1 118 0 227 302 16 0 chr15 8519526 8519589 -77176165 + GA-rich Low_complexity Low_complexity 3 66 0 1684 158 4 0 chr15 8521203 8521482 -77174272 - AluJb SINE Alu -12 300 21 240 35 0 0 chr15 8521741 8521770 -77173984 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1902 129 11 0 chr15 8521773 8522051 -77173703 - AluSx SINE Alu -31 281 1 465 270 131 42 chr15 8525003 8525182 -77170572 - L1M4 LINE L1 -2673 3473 3311 2096 122 0 26 chr15 8525182 8525494 -77170260 - AluSx SINE Alu -8 304 1 465 270 131 42 chr15 8525494 8525978 -77169776 - L1M4 LINE L1 -2835 3311 2751 22 0 0 0 chr15 8526175 8526197 -77169557 + AT_rich Low_complexity Low_complexity 1 22 0 2188 60 4 0 chr15 8526493 8526797 -77168957 + AluY SINE Alu 1 305 0 229 328 92 8 chr15 8526871 8527002 -77168752 + MIR SINE MIR 70 211 -51 211 200 0 0 chr15 8527764 8527799 -77167955 + polypurine Low_complexity Low_complexity 1 35 0 880 128 44 61 chr15 8528355 8528535 -77167219 - L1MCa LINE L1 -5736 690 514 2217 69 17 3 chr15 8528535 8528825 -77166929 + AluY SINE Alu 1 294 -17 282 277 71 19 chr15 8529061 8529216 -77166538 - L1ME3A LINE L1 -15 6155 5993 190 293 67 0 chr15 8529299 8529374 -77166380 + L2 LINE L2 3137 3216 -56 550 350 35 0 chr15 8529914 8530114 -77165640 - MIR SINE MIR -28 234 28 711 271 30 48 chr15 8530669 8530984 -77164770 + L1MEc LINE L1 1426 1747 -829 31 26 0 0 chr15 8531173 8531211 -77164543 + AT_rich Low_complexity Low_complexity 1 38 0 1926 115 4 4 chr15 8531243 8531550 -77164204 - AluSx SINE Alu 0 312 6 227 250 140 30 chr15 8533339 8533439 -77162315 + MER5A DNA MER1_type 74 184 -5 388 200 0 24 chr15 8533585 8533670 -77162084 - MER69 DNA AcHobo -1135 91 9 892 117 0 29 chr15 8534539 8534676 -77161078 + AluSq/x SINE Alu 1 133 -179 1796 150 3 7 chr15 8534679 8534985 -77160769 + AluSx SINE Alu 1 305 -7 326 246 234 50 chr15 8535327 8535648 -77160106 - LTR16A1 LTR ERVL -77 380 1 224 250 164 39 chr15 8536783 8536887 -77158867 + L3b LINE CR1 1334 1450 -133 225 221 12 23 chr15 8537513 8537599 -77158155 + (TA)n Simple_repeat Simple_repeat 2 86 0 180 0 0 0 chr15 8537959 8537979 -77157775 + (A)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 8540549 8540569 -77155185 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1029 69 0 50 chr15 8541199 8541359 -77154395 - AluY SINE Alu -3 308 157 385 333 8 0 chr15 8542237 8542357 -77153397 - MIR3 SINE MIR -3 205 85 198 284 52 75 chr15 8544357 8544491 -77151263 + L2 LINE L2 3139 3269 -3 283 308 155 23 chr15 8546243 8546936 -77148818 + L2 LINE L2 2383 3248 -24 1361 152 45 26 chr15 8546943 8547207 -77148547 - AluJo SINE Alu -1 311 43 934 142 0 8 chr15 8547503 8547637 -77148117 - FLAM_C SINE Alu -10 133 1 2057 145 0 7 chr15 8548258 8548568 -77147186 - AluJo SINE Alu 0 312 5 1297 145 20 5 chr15 8550017 8550217 -77145537 + AluSq SINE Alu 1 203 -110 565 75 0 0 chr15 8550217 8550284 -77145470 + AluSq/x SINE Alu 69 135 -178 2091 115 13 13 chr15 8550284 8550588 -77145166 + AluSx SINE Alu 1 304 -8 1897 134 36 0 chr15 8551030 8551307 -77144447 + AluSx SINE Alu 1 287 -25 2081 124 13 3 chr15 8551315 8551621 -77144133 + AluSq SINE Alu 1 309 -4 2223 98 3 0 chr15 8551635 8551968 -77143786 + AluSx SINE Alu 1 334 0 2314 72 0 14 chr15 8552673 8552963 -77142791 - AluSx SINE Alu -26 286 1 243 0 0 0 chr15 8552996 8553023 -77142731 + (TG)n Simple_repeat Simple_repeat 2 28 0 197 241 108 24 chr15 8554012 8554095 -77141659 - L2 LINE L2 -522 2792 2703 2214 107 3 19 chr15 8554209 8554526 -77141228 - AluSx SINE Alu 0 312 1 4740 212 49 72 chr15 8554950 8556278 -77139476 + L1M4 LINE L1 1 1297 -5245 3537 220 33 20 chr15 8556300 8556341 -77139413 + L1M4 LINE L1 1239 1278 -5368 1731 142 9 99 chr15 8556341 8556673 -77139081 + AluJo SINE Alu 1 302 0 3537 220 33 20 chr15 8556673 8557686 -77138068 + L1M4 LINE L1 1278 2397 -4249 918 145 0 0 chr15 8557688 8557819 -77137935 + AluSx SINE Alu 1 131 -182 1009 139 0 13 chr15 8557925 8558083 -77137671 + AluSx SINE Alu 140 295 -14 3508 230 23 20 chr15 8558085 8558195 -77137559 + L1M4 LINE L1 2389 2497 -4147 788 220 0 0 chr15 8558195 8558327 -77137427 + FLAM_A SINE Alu 1 132 -1 3508 230 23 20 chr15 8558327 8559376 -77136378 + L1M4 LINE L1 2497 3547 -3097 3801 233 68 38 chr15 8559451 8560406 -77135348 + L1MDb LINE L1 775 1750 -4656 738 194 8 0 chr15 8560406 8560535 -77135219 - FLAM_A SINE Alu -3 130 1 3801 233 68 38 chr15 8560535 8561036 -77134718 + L1MDb LINE L1 1750 2234 -4172 3581 223 73 60 chr15 8561050 8562054 -77133700 + L1M4 LINE L1 4118 5107 -1557 438 69 0 0 chr15 8562054 8562112 -77133642 + (TTG)n Simple_repeat Simple_repeat 2 59 0 785 174 0 0 chr15 8562114 8562229 -77133525 - FLAM_C SINE Alu -28 115 1 3581 223 73 60 chr15 8562229 8563256 -77132498 + L1M4 LINE L1 5107 6286 -378 2240 99 0 0 chr15 8563272 8563582 -77132172 + AluSx SINE Alu 2 311 0 204 118 29 0 chr15 8564272 8564306 -77131448 + G-rich Low_complexity Low_complexity 4 38 0 2185 105 0 0 chr15 8564609 8564929 -77130825 - AluSx SINE Alu 0 320 1 22 35 0 0 chr15 8565953 8565982 -77129772 + AT_rich Low_complexity Low_complexity 1 29 0 674 241 55 19 chr15 8566210 8566391 -77129363 + MIR SINE MIR 12 192 -62 1027 121 0 0 chr15 8568282 8568414 -77127340 + FLAM_C SINE Alu 2 133 0 330 287 101 32 chr15 8570774 8570962 -77124792 - L1ME3A LINE L1 0 6170 5970 595 153 40 48 chr15 8570982 8571106 -77124648 - MLT1G LTR MaLR 0 590 468 881 200 40 0 chr15 8571107 8571257 -77124497 + MER63A DNA MER1_type 55 210 0 1276 244 168 21 chr15 8571257 8571643 -77124111 - MLT1G LTR MaLR -130 460 18 2250 62 24 0 chr15 8571643 8571934 -77123820 - AluYa5 SINE Alu -13 298 1 1392 226 108 46 chr15 8572030 8572551 -77123203 - L1MC5 LINE L1 -430 7531 6979 794 191 31 6 chr15 8572553 8572715 -77123039 + MLT1A2 LTR MaLR 209 374 0 2146 99 19 19 chr15 8572861 8573173 -77122581 - AluSx SINE Alu 0 312 1 669 285 40 59 chr15 8573178 8573634 -77122120 - HAL1b LINE L1 -841 507 61 2583 62 0 0 chr15 8574053 8574362 -77121392 - AluY SINE Alu -2 309 1 995 265 189 28 chr15 8575096 8575730 -77120024 + L2 LINE L2 2549 3313 0 1886 109 0 7 chr15 8575894 8576168 -77119586 + AluSx SINE Alu 40 311 -1 1381 215 25 104 chr15 8576299 8576703 -77119051 + MLT1A2 LTR MaLR 3 374 0 827 198 18 12 chr15 8577006 8577173 -77118581 + AluJb SINE Alu 122 289 -23 312 242 85 103 chr15 8577717 8577940 -77117814 + L1M2 LINE L1 1181 1399 -5450 614 147 55 156 chr15 8579418 8579656 -77116098 - MER20 DNA MER1_type -5 214 1 2440 57 0 10 chr15 8579864 8580162 -77115592 + AluY SINE Alu 1 295 -16 23 0 0 0 chr15 8580284 8580307 -77115447 + AT_rich Low_complexity Low_complexity 1 23 0 2373 70 13 16 chr15 8580731 8581043 -77114711 - AluSq SINE Alu -2 311 1 233 35 0 0 chr15 8581248 8581277 -77114477 - U7 snRNA snRNA -33 30 2 2033 228 42 40 chr15 8631312 8631904 -77063850 - L1MC3 LINE L1 -709 7076 6484 1063 222 43 0 chr15 8632222 8632429 -77063325 - MER58A DNA MER1_type 0 224 9 1576 98 98 70 chr15 8632708 8632993 -77062761 - AluSx SINE Alu -19 293 1 275 359 36 24 chr15 8633495 8633662 -77062092 + MIR SINE MIR 20 188 -74 400 273 49 33 chr15 8633881 8634064 -77061690 - L2 LINE L2 0 3313 3128 2183 64 4 4 chr15 8634536 8634846 -77060908 - AluY SINE Alu 0 310 1 1318 220 43 69 chr15 8634870 8635288 -77060466 + MLT1C LTR MaLR 3 409 -58 489 183 75 0 chr15 8635287 8635364 -77060390 - MLT2D LTR ERVL -183 231 148 2231 150 106 10 chr15 8635364 8635751 -77060003 - MSTB1 LTR MaLR 0 432 9 729 193 40 0 chr15 8635757 8635907 -77059847 - MLT2D LTR ERVL -254 160 5 1549 163 52 7 chr15 8635910 8636217 -77059537 - ERVL-D LTR ERVL -7 5757 5437 2244 225 39 4 chr15 8636300 8636811 -77058943 - ERVL-D LTR ERVL -320 5444 4916 * 9918 216 42 7 chr15 8636799 8638812 -77056942 - ERVL-D LTR ERVL -1313 4451 2367 2398 65 31 0 chr15 8638812 8639106 -77056648 - AluY SINE Alu -8 303 1 2091 175 95 5 chr15 8639113 8639524 -77056230 - L1MC1 LINE L1 -9 6324 5877 1386 251 50 19 chr15 8639505 8639923 -77055831 - L1M4 LINE L1 -1008 5138 4708 * 2818 225 17 20 chr15 8639928 8640375 -77055379 - ERVL-D LTR ERVL -3391 2373 1927 2147 132 0 6 chr15 8640375 8640686 -77055068 + AluSg SINE Alu 1 309 -1 2818 225 17 20 chr15 8640686 8640837 -77054917 - ERVL-D LTR ERVL -3837 1927 1777 11367 191 14 5 chr15 8640855 8642928 -77052826 + ERVL-B1 LTR ERVL 3668 5757 -7 1462 212 14 98 chr15 8642928 8643348 -77052406 + MLT2B1 LTR ERVL 1 385 -135 586 281 17 17 chr15 8643353 8643531 -77052223 + Ricksha DNA DNA 727 904 -2342 357 253 72 75 chr15 8644043 8644128 -77051626 + L1M4b LINE L1 11 95 -6764 2589 66 0 0 chr15 8644128 8644433 -77051321 - AluY SINE Alu -6 305 1 357 253 72 75 chr15 8644433 8644579 -77051175 + L1M4b LINE L1 95 241 -6618 251 319 60 0 chr15 8644585 8644701 -77051053 + L1M4b LINE L1 700 822 -6037 1413 277 41 76 chr15 8644717 8645013 -77050741 + L1M4b LINE L1 798 1103 -5752 2504 63 0 0 chr15 8645013 8645315 -77050439 - AluY SINE Alu -9 302 1 1413 277 41 76 chr15 8645315 8646070 -77049684 + L1M4b LINE L1 1103 1812 -5043 384 303 66 31 chr15 8646242 8646724 -77049030 - L1M4 LINE L1 -2392 3754 3256 2308 92 7 0 chr15 8646750 8647053 -77048701 + AluSx SINE Alu 1 305 -7 2494 84 0 0 chr15 8647071 8647380 -77048374 + AluY SINE Alu 3 311 0 630 202 229 0 chr15 8647392 8647580 -77048174 - LTR39 LTR ERV1 -552 231 1 3692 197 30 77 chr15 8647580 8648631 -77047123 - HERVL74 LTR ERVL -809 4876 3875 592 187 168 0 chr15 8648631 8648786 -77046968 - LTR47A LTR ERVL -11 441 261 737 244 38 14 chr15 8649417 8649626 -77046128 - HERVL74 LTR ERVL -1936 3749 3536 904 282 57 4 chr15 8649637 8649917 -77045837 - HERVL74 LTR ERVL -2261 3424 3130 1596 224 9 3 chr15 8649927 8650276 -77045478 + MLT1A1 LTR MaLR 15 365 0 3870 213 41 63 chr15 8650280 8650881 -77044873 + MLT1A1-int LTR MaLR 4 617 -1118 1571 196 0 41 chr15 8650881 8651172 -77044582 + AluJo SINE Alu 3 281 -31 204 40 0 0 chr15 8651172 8651197 -77044557 + (GGAGAA)n Simple_repeat Simple_repeat 3 27 0 3870 213 41 63 chr15 8651197 8651715 -77044039 + MLT1A1-int LTR MaLR 615 1099 -636 1574 218 33 3 chr15 8651720 8652051 -77043703 + MLT1A1 LTR MaLR 25 365 0 1079 209 25 0 chr15 8652051 8652286 -77043468 - HERVL74 LTR ERVL -3657 2028 1788 1815 176 22 6 chr15 8652289 8652652 -77043102 + LTR57 LTR ERVL 3 371 -40 201 343 29 0 chr15 8653479 8653549 -77042205 + L2 LINE L2 3186 3257 -15 1488 166 22 47 chr15 8654164 8654484 -77041270 - AluJb SINE Alu 0 312 1 243 304 247 15 chr15 8657171 8657434 -77038320 + L3 LINE CR1 1244 1567 -10 207 391 45 30 chr15 8657839 8657972 -77037782 - L2 LINE L2 -44 3228 3094 763 224 84 70 chr15 8660148 8660447 -77035307 + L2 LINE L2 3008 3310 -3 440 297 94 42 chr15 8661781 8661993 -77033761 - MIR SINE MIR -26 236 14 387 0 0 0 chr15 8662032 8662075 -77033679 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 371 64 50 chr15 8662349 8662489 -77033265 - L2 LINE L2 -5 3267 3126 22 35 0 0 chr15 8663326 8663355 -77032399 + AT_rich Low_complexity Low_complexity 1 29 0 202 241 161 46 chr15 8665460 8665547 -77030207 + MER5B DNA MER1_type 3 99 -79 521 273 119 92 chr15 8666381 8666718 -77029036 - L1M4 LINE L1 -1972 4174 3829 384 77 0 0 chr15 8666917 8666969 -77028785 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2117 89 3 28 chr15 8666969 8667260 -77028494 - AluY SINE Alu -26 285 2 740 133 0 16 chr15 8667404 8667532 -77028222 + MER3 DNA MER1_type 67 192 -17 2180 93 7 23 chr15 8669069 8669369 -77026385 + AluSx SINE Alu 1 295 -17 216 67 0 0 chr15 8669561 8669591 -77026163 + (GGA)n Simple_repeat Simple_repeat 3 32 0 30 45 0 0 chr15 8669832 8669876 -77025878 + AT_rich Low_complexity Low_complexity 1 44 0 810 230 90 22 chr15 8669923 8670288 -77025466 - L1MC5 LINE L1 -304 7657 7268 442 257 104 25 chr15 8670452 8670693 -77025061 - L1MC5 LINE L1 -745 7216 6957 493 329 69 83 chr15 8672735 8672891 -77022863 + L2 LINE L2 2842 2999 -273 2068 101 61 0 chr15 8672891 8673169 -77022585 - AluSx SINE Alu -17 295 1 493 329 69 83 chr15 8673169 8673447 -77022307 + L2 LINE L2 2999 3270 -2 641 316 53 4 chr15 8673920 8674167 -77021587 + L2 LINE L2 2815 3073 -240 537 214 0 0 chr15 8674258 8674361 -77021393 + U6 snRNA snRNA 4 106 -1 2297 81 0 3 chr15 8675042 8675340 -77020414 + AluSg SINE Alu 3 299 -11 363 250 173 10 chr15 8675583 8675687 -77020067 + L2 LINE L2 3193 3313 0 1122 224 97 24 chr15 8677077 8677457 -77018297 - L1MD2 LINE L1 -13 6346 5939 2311 102 0 0 chr15 8677520 8677813 -77017941 + AluSx SINE Alu 1 293 -19 563 198 78 0 chr15 8677825 8677941 -77017813 + FLAM_C SINE Alu 1 125 -18 1369 205 31 14 chr15 8677951 8678244 -77017510 + AluJo SINE Alu 1 298 -14 334 194 9 4 chr15 8678289 8678397 -77017357 + Tigger5 DNA MER2_type 44 199 -2124 2156 105 24 0 chr15 8678811 8679106 -77016648 + AluSx SINE Alu 1 302 -10 1807 172 30 15 chr15 8679531 8679868 -77015886 - MER2 DNA MER2_type -1 343 2 2306 95 0 3 chr15 8679926 8680222 -77015532 - AluSx SINE Alu -17 295 1 1471 150 213 8 chr15 8680533 8680933 -77014821 - L1MB7 LINE L1 0 6184 5703 * 1704 225 135 16 chr15 8680931 8681679 -77014075 - L1M4 LINE L1 -1638 4508 3638 360 182 0 0 chr15 8684377 8684443 -77011311 - MER92C LTR ERV1 0 554 489 1140 161 0 0 chr15 8684629 8684803 -77010951 + AluJb SINE Alu 109 282 -30 1903 159 7 3 chr15 8685585 8685881 -77009873 - AluJb SINE Alu -15 297 1 2367 86 0 13 chr15 8686025 8686328 -77009426 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 8687512 8687533 -77008221 + AT_rich Low_complexity Low_complexity 1 21 0 2231 88 3 14 chr15 8692411 8692708 -77003046 - AluY SINE Alu -17 294 1 2212 103 0 19 chr15 8692850 8693160 -77002594 + AluSx SINE Alu 1 304 -8 1839 189 88 8 chr15 8693628 8694015 -77001739 + MER47B DNA MER2_type 1 418 0 266 286 125 72 chr15 8694094 8694349 -77001405 + L2 LINE L2 2670 3046 -267 240 222 56 0 chr15 8694416 8694470 -77001284 + L2 LINE L2 3196 3252 -61 422 266 95 6 chr15 8694536 8694922 -77000832 + L1MEc LINE L1 1226 1672 -4724 1210 112 77 0 chr15 8694924 8695120 -77000634 + MER2 DNA MER2_type 1 211 -134 460 248 58 15 chr15 8695235 8695270 -77000484 + L1MEc LINE L1 1675 1707 -4689 1848 168 0 7 chr15 8695270 8695568 -77000186 - AluJb SINE Alu 0 312 17 460 248 58 15 chr15 8695568 8695669 -77000085 + L1MEc LINE L1 1707 1817 -4579 629 233 149 4 chr15 8695674 8695923 -76999831 + L1MEc LINE L1 1856 2140 -4256 987 185 11 38 chr15 8695929 8696113 -76999641 + AluJb SINE Alu 1 179 -133 4487 228 99 18 chr15 8696113 8696569 -76999185 + L1MEc LINE L1 2168 2585 -3630 1582 162 86 14 chr15 8696569 8696859 -76998895 + AluJb SINE Alu 1 311 -1 4487 228 99 18 chr15 8696859 8697588 -76998166 + L1MEc LINE L1 2585 3492 -2723 2080 114 13 35 chr15 8697588 8697905 -76997849 + AluSx SINE Alu 1 310 -2 4487 228 99 18 chr15 8697905 8698254 -76997500 + L1MEc LINE L1 3492 3811 -2404 2799 209 75 26 chr15 8698291 8698366 -76997388 + L1MB4 LINE L1 4540 4610 -1536 2448 80 0 0 chr15 8698366 8698668 -76997086 - AluY SINE Alu -9 302 1 2799 209 75 26 chr15 8698668 8699328 -76996426 + L1MB4 LINE L1 4610 5311 -835 1374 52 29 0 chr15 8699401 8699575 -76996179 - L1MA1 LINE L1 -6 6296 6118 451 232 99 91 chr15 8699595 8699865 -76995889 + MLT1E LTR MaLR 41 312 -255 459 40 100 24 chr15 8700549 8700801 -76994953 + (TA)n Simple_repeat Simple_repeat 1 271 0 * 476 91 57 34 chr15 8700765 8700940 -76994814 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 231 68 54 40 chr15 8700979 8701053 -76994701 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 283 194 0 42 chr15 8701058 8701130 -76994624 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr15 8702065 8702099 -76993655 + (CA)n Simple_repeat Simple_repeat 1 34 0 206 279 98 74 chr15 8702315 8702437 -76993317 - MER5A DNA MER1_type 0 189 65 821 156 0 0 chr15 8703379 8703507 -76992247 - AluJb SINE Alu -13 299 172 461 152 0 0 chr15 8703507 8703573 -76992181 - AluJ/FLAM SINE Alu -244 68 3 2851 204 63 26 chr15 8706049 8706774 -76988980 + L1MB4 LINE L1 5428 6179 -1 1877 142 3 65 chr15 8709499 8709822 -76985932 + AluJb SINE Alu 1 303 -9 1583 190 36 18 chr15 8710288 8710619 -76985135 + MER58B DNA MER1_type 5 341 0 2426 150 17 74 chr15 8710677 8710889 -76984865 + Tigger2a DNA MER2_type 1 223 -2485 2280 118 7 0 chr15 8710889 8711195 -76984559 - AluSx SINE Alu -4 308 1 2431 71 10 0 chr15 8711203 8711500 -76984254 - AluSp SINE Alu -8 305 6 2426 150 17 74 chr15 8711500 8711738 -76984016 + Tigger2a DNA MER2_type 230 434 0 222 118 0 0 chr15 8712726 8712760 -76982994 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 304 279 162 35 chr15 8713191 8713567 -76982187 + L2 LINE L2 2187 2610 -704 382 330 118 9 chr15 8713567 8713916 -76981838 + L2 LINE L2 2884 3270 -2 414 239 157 0 chr15 8714199 8714333 -76981421 - MIR SINE MIR 0 262 108 4558 93 27 37 chr15 8714866 8714996 -76980758 - L1MA5 LINE L1 -2 6298 6168 710 225 0 0 chr15 8714996 8715116 -76980638 - FLAM_A SINE Alu -13 120 1 4558 93 27 37 chr15 8715116 8715694 -76980060 - L1MA5 LINE L1 -132 6168 5597 1998 125 30 13 chr15 8715938 8716241 -76979513 + AluJb SINE Alu 1 308 -4 2303 138 12 0 chr15 8717224 8717558 -76978196 - MER1B DNA MER1_type 0 339 2 1038 154 109 25 chr15 8717718 8717919 -76977835 - MER20 DNA MER1_type 0 219 2 472 219 18 0 chr15 8717953 8718067 -76977687 + ERVL LTR ERVL 2291 2406 -3358 2392 98 0 0 chr15 8718524 8718821 -76976933 - AluSg SINE Alu -13 297 1 21 36 0 0 chr15 8719998 8720026 -76975728 + AT_rich Low_complexity Low_complexity 1 28 0 543 338 113 5 chr15 8720525 8720942 -76974812 - L2 LINE L2 -1 3312 2851 2343 77 18 0 chr15 8721753 8722039 -76973715 - AluSp SINE Alu -22 291 1 2402 96 0 0 chr15 8723054 8723367 -76972387 - AluSq SINE Alu 0 313 1 916 170 0 30 chr15 8723369 8723534 -76972220 + AluJo/FRAM SINE Alu 148 307 -5 796 202 91 29 chr15 8727214 8727359 -76968395 + MER63 DNA MER1_type 838 1001 -60 2538 75 0 0 chr15 8727359 8727667 -76968087 - AluY SINE Alu -3 308 1 796 202 91 29 chr15 8727667 8727729 -76968025 + MER63 DNA MER1_type 1001 1058 -3 196 398 8 8 chr15 8727737 8727860 -76967894 + L2 LINE L2 3191 3313 0 584 235 121 95 chr15 8727900 8728312 -76967442 - L2 LINE L2 -5 3308 2886 934 225 6 0 chr15 8728360 8728542 -76967212 - MER58A DNA MER1_type 0 224 42 345 222 159 16 chr15 8728577 8728703 -76967051 - L2 LINE L2 -504 2810 2667 2350 85 3 0 chr15 8728709 8729002 -76966752 + AluY SINE Alu 1 294 -17 1729 215 80 5 chr15 8729002 8729425 -76966329 + L1MB5 LINE L1 5598 6052 -122 2144 120 10 0 chr15 8729906 8730198 -76965556 + AluSx SINE Alu 2 296 -16 483 208 88 0 chr15 8731180 8731305 -76964449 + L1MC3 LINE L1 5195 5330 -816 1802 206 57 4 chr15 8731308 8731968 -76963786 + L1MD2 LINE L1 4849 5545 -743 949 146 11 22 chr15 8731991 8732169 -76963585 + L1MD1 LINE L1 6062 6237 -5 2478 185 40 57 chr15 8732171 8732219 -76963535 + L1MC3 LINE L1 5319 5366 -2419 2446 62 0 10 chr15 8732219 8732528 -76963226 + AluY SINE Alu 1 306 -5 2478 185 40 57 chr15 8732528 8733129 -76962625 + L1MC3 LINE L1 5366 5957 -1828 576 154 31 15 chr15 8733282 8733412 -76962342 - AluSp SINE Alu -180 133 2 552 152 18 9 chr15 8733440 8733552 -76962202 + AluJb SINE Alu 2 114 -198 1628 158 0 45 chr15 8733554 8733864 -76961890 - AluSp SINE Alu -17 296 1 885 98 30 0 chr15 8733871 8734003 -76961751 - AluSp SINE Alu -177 136 1 928 196 11 0 chr15 8734033 8734222 -76961532 + AluJb SINE Alu 118 308 -4 1462 98 0 0 chr15 8735373 8735557 -76960197 + AluSx SINE Alu 2 185 -127 1868 234 67 38 chr15 8735680 8735722 -76960032 + L1MD2 LINE L1 5551 5590 -769 180 0 0 0 chr15 8735722 8735742 -76960012 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1868 234 67 38 chr15 8735742 8736033 -76959721 + L1MD2 LINE L1 5590 5912 -447 2211 89 0 3 chr15 8736033 8736353 -76959401 + AluSc SINE Alu 1 319 0 1868 234 67 38 chr15 8736353 8736599 -76959155 + L1MD2 LINE L1 5912 6149 -210 462 173 0 0 chr15 8736802 8736881 -76958873 - MER2 DNA MER2_type -135 210 132 1604 159 5 66 chr15 8736881 8737304 -76958450 - MER1B DNA MER1_type 0 339 3 706 182 8 0 chr15 8737311 8737432 -76958322 - MER2 DNA MER2_type -222 123 2 359 203 8 73 chr15 8737433 8737556 -76958198 + L1MD3 LINE L1 7868 7982 -13 2588 58 3 0 chr15 8737556 8737864 -76957890 + AluY SINE Alu 1 309 -2 1746 146 182 17 chr15 8738891 8739253 -76956501 + MSTB LTR MaLR 5 426 0 2464 60 0 0 chr15 8739652 8739969 -76955785 + AluY SINE Alu 1 317 0 1903 289 166 39 chr15 8740596 8741998 -76953756 + L2 LINE L2 285 1864 -1450 1808 225 3 11 chr15 8742054 8742414 -76953340 + MLT1A1 LTR MaLR 1 357 -8 2841 187 8 14 chr15 8742414 8742927 -76952827 + MLT1A1-int LTR MaLR 3 512 -1223 2203 109 10 3 chr15 8742949 8743252 -76952502 + AluSx SINE Alu 1 305 -7 1012 191 109 18 chr15 8743255 8743517 -76952237 - MLT-int LTR MaLR -155 1496 1222 973 235 19 103 chr15 8743640 8743959 -76951795 - MLT-int LTR MaLR -945 790 499 * 2523 176 17 38 chr15 8743951 8744485 -76951269 + L1MA2 LINE L1 3938 4460 -1686 5185 126 18 119 chr15 8744485 8746025 -76949729 - pTR5 LTR ERV1 0 2606 1524 1292 150 20 4 chr15 8746025 8746271 -76949483 + L1MA2 LINE L1 4457 4706 -1440 5245 146 20 12 chr15 8747694 8748869 -76946885 + L1MA2 LINE L1 4696 5891 -413 1780 153 60 38 chr15 8748869 8749234 -76946520 + THE1C LTR MaLR 1 373 -2 5245 146 20 12 chr15 8749234 8749420 -76946334 + L1MA2 LINE L1 5891 6074 -230 22 0 0 0 chr15 8749501 8749523 -76946231 + AT_rich Low_complexity Low_complexity 1 22 0 702 310 150 13 chr15 8749595 8750056 -76945698 + L2 LINE L2 2203 2726 -588 422 183 17 52 chr15 8750126 8750241 -76945513 + MER3 DNA MER1_type 97 207 -2 788 203 0 0 chr15 8750387 8750525 -76945229 + MLT1A1 LTR MaLR 228 365 0 230 214 0 0 chr15 8750527 8750569 -76945185 - L1MEc LINE L1 -6314 82 41 1217 170 44 22 chr15 8750869 8751098 -76944656 - MLT1A1 LTR MaLR -129 236 3 2682 281 81 37 chr15 8751099 8751174 -76944580 + L1MEc LINE L1 79 149 -6247 1439 199 42 72 chr15 8751174 8751576 -76944178 - MLT1B LTR MaLR 0 390 1 2682 281 81 37 chr15 8751576 8751875 -76943879 + L1MEc LINE L1 149 434 -5962 2459 206 63 34 chr15 8751875 8752459 -76943295 - MER77 LTR ERV1 -4 601 1 2682 281 81 37 chr15 8752459 8752740 -76943014 + L1MEc LINE L1 434 701 -5695 4809 164 44 1 chr15 8752740 8754099 -76941655 + L1PA16 LINE L1 4766 6158 -8 2682 281 81 37 chr15 8754099 8754113 -76941641 + L1MEc LINE L1 701 713 -5683 1423 199 95 9 chr15 8754113 8754449 -76941305 + MLT1A1 LTR MaLR 1 365 0 2682 281 81 37 chr15 8754449 8754864 -76940890 + L1MEc LINE L1 713 1239 -5157 2411 90 0 3 chr15 8754864 8755176 -76940578 + AluY SINE Alu 1 311 0 2682 281 81 37 chr15 8755176 8755452 -76940302 + L1MEc LINE L1 1239 1502 -4894 257 132 0 0 chr15 8755551 8755589 -76940165 + Alu SINE Alu 5 42 -260 1427 233 25 6 chr15 8755751 8756077 -76939677 - HERVL74 LTR ERVL -3894 1791 1460 1371 192 92 3 chr15 8756119 8756411 -76939343 - HERVL74 LTR ERVL -4299 1386 1069 201 74 0 0 chr15 8756478 8756505 -76939249 + (T)n Simple_repeat Simple_repeat 1 27 0 44447 46 5 1 chr15 8756539 8762670 -76933084 + L1PA4 LINE L1 2 6155 0 1439 247 126 14 chr15 8762688 8763198 -76932556 - L1MEc LINE L1 -5646 750 184 1534 88 92 11 chr15 8763217 8763478 -76932276 - L1MA3 LINE L1 0 6305 6024 227 250 0 0 chr15 8763489 8763545 -76932209 - L1MEc LINE L1 -6206 190 135 362 16 81 0 chr15 8763551 8763613 -76932141 + (CATTT)n Simple_repeat Simple_repeat 1 67 0 405 127 0 0 chr15 8763613 8763668 -76932086 - AluJ/FRAM SINE Alu -22 280 226 506 24 73 0 chr15 8763668 8763750 -76932004 + (CATTT)n Simple_repeat Simple_repeat 1 88 0 377 146 0 0 chr15 8763752 8763807 -76931947 - AluJ/FRAM SINE Alu -22 280 226 518 15 30 0 chr15 8763807 8763873 -76931881 + (CATTT)n Simple_repeat Simple_repeat 1 68 0 405 127 0 0 chr15 8763875 8763930 -76931824 - AluJ/FRAM SINE Alu -22 280 226 316 21 62 0 chr15 8763930 8763978 -76931776 + (CATTT)n Simple_repeat Simple_repeat 1 51 0 369 164 0 0 chr15 8763982 8764037 -76931717 - AluJ/FRAM SINE Alu -22 280 226 269 26 26 0 chr15 8764044 8764082 -76931672 + (CATTT)n Simple_repeat Simple_repeat 5 43 0 362 151 0 0 chr15 8764098 8764151 -76931603 - AluJ/FRAM SINE Alu -24 278 226 306 19 94 0 chr15 8764151 8764204 -76931550 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 392 143 0 0 chr15 8764206 8764262 -76931492 - AluJ/FRAM SINE Alu -22 280 225 379 26 117 0 chr15 8764262 8764339 -76931415 + (CATTT)n Simple_repeat Simple_repeat 2 87 0 365 191 0 0 chr15 8764339 8764402 -76931352 - AluJ/FRAM SINE Alu -14 288 226 331 0 82 0 chr15 8764402 8764451 -76931303 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 392 143 0 0 chr15 8764453 8764509 -76931245 - AluJ/FRAM SINE Alu -22 280 225 357 18 70 0 chr15 8764515 8764572 -76931182 + (CATTT)n Simple_repeat Simple_repeat 5 65 0 355 233 0 0 chr15 8764576 8764649 -76931105 - AluJ/FRAM SINE Alu -4 298 226 202 0 91 0 chr15 8764649 8764682 -76931072 + (CATTT)n Simple_repeat Simple_repeat 1 36 0 369 164 0 0 chr15 8764686 8764741 -76931013 - AluJ/FRAM SINE Alu -22 280 226 327 0 94 0 chr15 8764741 8764794 -76930960 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764810 8764863 -76930891 - AluJ/FRAM SINE Alu -24 278 257 306 19 94 0 chr15 8764863 8764916 -76930838 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764916 8764948 -76930806 - AluJ/FRAM SINE Alu -45 257 226 343 93 0 0 chr15 8764926 8764969 -76930785 - Alu SINE Alu -34 267 225 * 215 0 67 0 chr15 8764970 8765000 -76930754 + (CATTT)n Simple_repeat Simple_repeat 2 33 0 405 127 0 0 chr15 8765002 8765057 -76930697 - AluJ/FRAM SINE Alu -22 280 226 494 12 96 0 chr15 8765058 8765141 -76930613 + (CATTT)n Simple_repeat Simple_repeat 2 92 0 406 140 0 0 chr15 8765142 8765199 -76930555 - AluJ/FRAM SINE Alu -31 281 225 413 208 0 0 chr15 8765232 8765309 -76930445 - AluJ/FRAM SINE Alu 0 302 226 381 32 65 0 chr15 8765309 8765371 -76930383 + (CATTT)n Simple_repeat Simple_repeat 1 66 0 369 164 0 0 chr15 8765375 8765430 -76930324 - AluJ/FRAM SINE Alu -22 280 226 325 20 61 0 chr15 8765431 8765480 -76930274 + (CATTT)n Simple_repeat Simple_repeat 2 53 0 355 130 0 19 chr15 8765496 8765550 -76930204 - AluJ/FRAM SINE Alu -24 278 226 232 25 75 0 chr15 8765550 8765590 -76930164 + (CATTT)n Simple_repeat Simple_repeat 1 43 0 355 164 0 0 chr15 8765592 8765647 -76930107 - AluJ/FRAM SINE Alu -22 280 226 282 0 104 0 chr15 8765647 8765695 -76930059 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 401 125 0 0 chr15 8765697 8765753 -76930001 - AluJ/FRAM SINE Alu -22 280 225 246 43 85 0 chr15 8765759 8765806 -76929948 + (CATTT)n Simple_repeat Simple_repeat 5 55 0 369 206 27 0 chr15 8765810 8765883 -76929871 - AluJ/FRAM SINE Alu -2 300 226 273 0 106 0 chr15 8765883 8765930 -76929824 + (CATTT)n Simple_repeat Simple_repeat 1 52 0 360 167 0 0 chr15 8765930 8765984 -76929770 - AluJ/FRAM SINE Alu -23 279 226 196 0 118 0 chr15 8765984 8766018 -76929736 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 385 132 0 0 chr15 8766034 8766087 -76929667 - AluJ/FRAM SINE Alu -24 278 226 474 14 57 0 chr15 8766087 8766157 -76929597 + (CATTT)n Simple_repeat Simple_repeat 1 74 0 394 127 0 0 chr15 8766166 8766221 -76929533 - AluJ/FRAM SINE Alu -22 280 226 232 0 105 0 chr15 8766222 8766260 -76929494 + (CATTT)n Simple_repeat Simple_repeat 2 43 0 405 127 0 0 chr15 8766262 8766317 -76929437 - AluJ/FRAM SINE Alu -22 280 226 418 16 66 0 chr15 8766317 8766378 -76929376 + (CATTT)n Simple_repeat Simple_repeat 1 65 0 1442 160 125 12 chr15 8766378 8766634 -76929120 - AluJo SINE Alu -17 285 1 892 205 144 5 chr15 8768267 8768462 -76927292 + MER58A DNA MER1_type 1 222 -2 11292 121 29 16 chr15 8768979 8770430 -76925324 + Tigger1 DNA MER2_type 1 1480 -938 1551 70 10 5 chr15 8770430 8770630 -76925124 + AluY SINE Alu 110 310 -1 11292 121 29 16 chr15 8770630 8770918 -76924836 + Tigger1 DNA MER2_type 1480 1763 -655 668 174 68 0 chr15 8770911 8771043 -76924711 + Tigger1 DNA MER2_type 2277 2417 -1 * 799 220 154 76 chr15 8771049 8771458 -76924296 + MLT1F1 LTR MaLR 69 509 -58 2385 81 0 44 chr15 8771645 8771965 -76923789 + AluSg SINE Alu 1 306 -4 2188 107 30 0 chr15 8772396 8772695 -76923059 - AluSx SINE Alu -4 308 1 2377 79 0 26 chr15 8772823 8773126 -76922628 + AluSq SINE Alu 1 295 -18 2049 62 0 0 chr15 8774004 8774245 -76921509 - AluSg SINE Alu -69 241 1 2224 102 3 0 chr15 8775582 8775875 -76919879 - AluY SINE Alu -17 294 1 295 204 0 0 chr15 8777688 8777742 -76918012 + MER58 DNA MER1_type 171 224 -117 207 305 0 0 chr15 8779053 8779112 -76916642 + GA-rich Low_complexity Low_complexity 1 59 0 510 291 32 77 chr15 8779136 8779449 -76916305 - L2 LINE L2 -585 2729 2431 1453 184 42 4 chr15 8779523 8779784 -76915970 + AluJb SINE Alu 1 271 -41 1764 154 3 10 chr15 8779906 8780199 -76915555 + AluJo SINE Alu 1 291 -21 24 32 0 0 chr15 8781805 8781836 -76913918 + AT_rich Low_complexity Low_complexity 1 31 0 1139 136 0 0 chr15 8782069 8782223 -76913531 + FRAM SINE Alu 1 150 -26 949 217 57 62 chr15 8782394 8782782 -76912972 + L1MC5 LINE L1 6876 7237 -724 2312 99 3 3 chr15 8783833 8784136 -76911618 + AluSp SINE Alu 1 303 -10 2133 131 0 3 chr15 8784147 8784445 -76911309 + AluSx SINE Alu 5 301 -11 22 0 0 0 chr15 8784807 8784829 -76910925 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 8785049 8785071 -76910683 + AT_rich Low_complexity Low_complexity 1 22 0 221 214 54 54 chr15 8785350 8785462 -76910292 + MIR SINE MIR 26 137 -125 253 262 16 0 chr15 8785822 8785883 -76909871 - MER46C DNA MER2_type -276 62 1 506 282 124 19 chr15 8786741 8787000 -76908754 - MER46C DNA MER2_type -51 287 2 2457 60 10 3 chr15 8787017 8787318 -76908436 - AluY SINE Alu -8 303 1 2483 199 117 23 chr15 8789208 8790453 -76905301 + L1MD2 LINE L1 4552 5910 -449 188 300 0 0 chr15 8790553 8790613 -76905141 - MIR SINE MIR -144 118 59 3174 220 62 52 chr15 8790706 8792291 -76903463 + L1ME1 LINE L1 4295 5895 -271 2044 147 0 3 chr15 8792291 8792604 -76903150 + AluJb SINE Alu 1 312 0 3174 220 62 52 chr15 8792604 8792874 -76902880 + L1ME1 LINE L1 5895 6161 -5 2370 65 41 0 chr15 8794059 8794353 -76901401 + AluY SINE Alu 1 306 -5 2356 69 0 4 chr15 8795092 8795374 -76900380 + AluY SINE Alu 1 281 -30 190 0 0 0 chr15 8795374 8795395 -76900359 + (TAAA)n Simple_repeat Simple_repeat 2 104 0 180 0 0 0 chr15 8796031 8796051 -76899703 + (GGGAA)n Simple_repeat Simple_repeat 5 24 0 2476 239 40 29 chr15 8796236 8796994 -76898760 - L1ME3A LINE L1 -2 6168 5403 303 303 86 12 chr15 8798949 8799111 -76896643 - L1ME3A LINE L1 -1871 4275 4102 2408 54 0 0 chr15 8799491 8799807 -76895947 + AluY SINE Alu 1 316 0 213 149 21 21 chr15 8800130 8800177 -76895577 - MER5A DNA MER1_type -22 167 121 340 246 146 15 chr15 8800491 8800621 -76895133 - MER103 DNA DNA -12 154 8 899 173 25 27 chr15 8801839 8802026 -76893728 + L1MC3 LINE L1 6196 6357 -2 235 236 307 21 chr15 8802666 8802806 -76892948 - L2 LINE L2 -20 3293 3114 1580 108 95 0 chr15 8803156 8803387 -76892367 - AluSx SINE Alu -11 301 49 7595 92 8 21 chr15 8803387 8804457 -76891297 + MER11C LTR ERVK 1 1057 -14 395 107 0 88 chr15 8804456 8804548 -76891206 - Alu SINE Alu -246 54 1 * 328 299 64 34 chr15 8804575 8804852 -76890902 - L1ME3 LINE L1 -206 5915 5650 305 236 133 33 chr15 8804922 8805154 -76890600 - L1ME3 LINE L1 -769 5395 5255 375 254 124 25 chr15 8805264 8805417 -76890337 + L1MC4a LINE L1 5722 5901 -1907 1457 181 3 60 chr15 8805417 8805731 -76890023 + AluJb SINE Alu 1 296 -16 375 254 124 25 chr15 8805731 8805778 -76889976 + L1MC4a LINE L1 5901 5942 -1866 858 129 5 118 chr15 8805779 8805965 -76889789 - AluSp SINE Alu -121 192 28 2452 164 38 19 chr15 8805966 8806442 -76889312 + LTR15 LTR ERV1 2 486 -7 264 108 0 0 chr15 8806473 8806510 -76889244 - AluSp SINE Alu -265 37 1 696 219 8 80 chr15 8806539 8806662 -76889092 + AluJb SINE Alu 2 101 -211 1696 176 3 3 chr15 8806662 8806974 -76888780 - AluSp SINE Alu -1 312 1 696 219 8 80 chr15 8806974 8807088 -76888666 + AluJb SINE Alu 101 222 -90 1551 168 6 47 chr15 8807113 8807434 -76888320 - AluSp SINE Alu -5 308 1 590 159 9 9 chr15 8807463 8807576 -76888178 + AluJb SINE Alu 2 114 -198 1578 168 6 50 chr15 8807578 8807899 -76887855 - AluSp SINE Alu -6 307 1 1288 144 9 107 chr15 8807927 8808044 -76887710 + AluJb SINE Alu 1 128 -184 1687 164 0 29 chr15 8808044 8808356 -76887398 - AluSp SINE Alu -10 303 1 1288 144 9 107 chr15 8808356 8808584 -76887170 + AluJb SINE Alu 128 312 0 394 178 40 103 chr15 8809242 8809416 -76886338 + L1MC5 LINE L1 7658 7820 -141 207 69 0 0 chr15 8809757 8809786 -76885968 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 943 169 0 18 chr15 8810910 8811076 -76884678 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 8811782 8811870 -76883884 - MIR SINE MIR -70 192 96 1921 132 0 45 chr15 8811921 8812231 -76883523 - AluSx SINE Alu -15 297 2 183 200 0 0 chr15 8812758 8812798 -76882956 - MIR SINE MIR -117 145 106 207 0 0 0 chr15 8813127 8813150 -76882604 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 235 78 0 chr15 8813285 8813336 -76882418 - MIR SINE MIR -59 149 95 431 233 103 27 chr15 8814358 8814504 -76881250 - MIR SINE MIR -70 192 36 228 307 79 18 chr15 8816121 8816235 -76879519 - L2 LINE L2 -5 3308 3188 246 338 119 0 chr15 8816242 8816393 -76879361 - MIR3 SINE MIR -9 199 31 310 287 73 7 chr15 8817322 8817458 -76878296 - MIR SINE MIR -70 192 48 2411 82 7 7 chr15 8817465 8817771 -76877983 - AluY SINE Alu -5 306 1 312 91 0 0 chr15 8820058 8820102 -76875652 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2315 107 0 0 chr15 8820449 8820749 -76875005 + AluSx SINE Alu 1 300 -12 532 236 114 7 chr15 8821083 8821113 -76874641 + MER5A DNA MER1_type 2 27 -162 252 0 0 0 chr15 8821113 8821141 -76874613 + (CAG)n Simple_repeat Simple_repeat 2 29 0 532 236 114 7 chr15 8821141 8821250 -76874504 + MER5A DNA MER1_type 27 156 -33 1491 204 4 4 chr15 8821992 8822267 -76873487 + AluJo SINE Alu 1 275 -37 609 173 17 34 chr15 8822380 8822559 -76873195 + GA-rich Low_complexity Low_complexity 2 177 0 461 231 117 41 chr15 8822568 8823034 -76872720 + L1ME LINE L1 5188 5701 -469 2303 84 0 7 chr15 8823212 8823508 -76872246 + AluY SINE Alu 1 294 -17 682 235 84 50 chr15 8824126 8824424 -76871330 - L1MC4a LINE L1 -1799 6009 5702 685 169 0 25 chr15 8824697 8824815 -76870939 + FRAM SINE Alu 56 170 -6 1796 176 0 3 chr15 8824815 8825099 -76870655 + AluJo SINE Alu 1 283 -29 324 0 0 0 chr15 8825099 8825135 -76870619 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 367 125 75 25 chr15 8825243 8825323 -76870431 + L1MB3 LINE L1 6083 6166 -17 746 167 0 53 chr15 8825343 8825493 -76870261 - FLAM_C SINE Alu 0 143 2 314 333 56 20 chr15 8825589 8825784 -76869970 + L1M4 LINE L1 2841 3042 -3104 310 278 183 33 chr15 8826113 8826354 -76869400 + L1M4 LINE L1 4557 4833 -1313 22 0 0 0 chr15 8826442 8826464 -76869290 + AT_rich Low_complexity Low_complexity 1 22 0 2268 99 3 0 chr15 8826893 8827187 -76868567 - AluSg SINE Alu -15 295 1 897 220 62 56 chr15 8827338 8827466 -76868288 - L1MEc LINE L1 -4409 1987 1861 1716 191 0 17 chr15 8827466 8827764 -76867990 + AluJb SINE Alu 1 293 -19 897 220 62 56 chr15 8827764 8827972 -76867782 - L1MEc LINE L1 -4535 1861 1649 2429 156 103 54 chr15 8827972 8828589 -76867165 + pTR5 LTR ERV1 1176 1768 -670 923 145 45 99 chr15 8828589 8828810 -76866944 - LTR15 LTR ERV1 -275 218 10 1161 154 48 92 chr15 8828810 8829082 -76866672 + AluSp SINE Alu 22 281 -32 203 79 26 0 chr15 8829083 8829121 -76866633 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1811 105 47 0 chr15 8829136 8829394 -76866360 + MSTB1 LTR MaLR 163 432 0 2281 107 7 3 chr15 8829425 8829725 -76866029 + AluSx SINE Alu 1 301 -11 360 0 0 0 chr15 8829861 8829901 -76865853 + (TTA)n Simple_repeat Simple_repeat 3 42 0 42368 53 6 19 chr15 8829901 8836111 -76859643 - L1PA4 LINE L1 -18 6137 11 260 284 59 0 chr15 8836126 8836228 -76859526 + L1ME3A LINE L1 6055 6162 -8 1126 222 162 55 chr15 8837098 8837585 -76858169 + MLT1F LTR MaLR 4 542 0 22 0 0 0 chr15 8837617 8837639 -76858115 + AT_rich Low_complexity Low_complexity 1 22 0 1961 245 26 83 chr15 8837639 8838406 -76857348 + L1ME2 LINE L1 5428 6150 -14 222 259 0 0 chr15 8838518 8838572 -76857182 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 269 250 62 0 chr15 8838572 8838668 -76857086 + L1MC4 LINE L1 7924 8025 -17 1863 170 0 0 chr15 8838804 8839093 -76856661 - AluJo SINE Alu -23 289 1 4576 167 36 19 chr15 8839227 8840112 -76855642 - MER54A LTR ERVL 0 901 2 323 284 43 9 chr15 8841120 8841236 -76854518 - MIR3 SINE MIR -33 175 56 235 198 99 12 chr15 8841847 8841928 -76853826 - L1MA10 LINE L1 -4 6330 6243 2536 159 28 35 chr15 8841928 8842386 -76853368 + Tigger1 DNA MER2_type 1 455 -1963 10224 102 46 23 chr15 8842395 8843863 -76851891 + Tigger1 DNA MER2_type 802 2310 -108 1628 163 7 52 chr15 8843863 8844169 -76851585 - AluJb SINE Alu -20 292 1 10224 102 46 23 chr15 8844169 8844277 -76851477 + Tigger1 DNA MER2_type 2310 2414 -4 2033 107 52 0 chr15 8844327 8844617 -76851137 + AluY SINE Alu 1 305 -6 3043 223 25 47 chr15 8844617 8845598 -76850156 - L1ME1 LINE L1 -141 6094 5153 2039 95 82 0 chr15 8845598 8845903 -76849851 + L1PB1 LINE L1 5822 6151 0 3043 223 25 47 chr15 8845903 8846186 -76849568 - L1ME1 LINE L1 -1082 5153 4865 636 184 97 72 chr15 8846212 8846419 -76849335 - L1MA9 LINE L1 -38 6274 6063 * 4422 243 62 21 chr15 8846416 8846480 -76849274 - L1ME1 LINE L1 -1366 4849 4789 1989 126 37 37 chr15 8846480 8846854 -76848900 + THE1C LTR MaLR 1 374 -1 4422 243 62 21 chr15 8846854 8848416 -76847338 - L1ME1 LINE L1 -1426 4789 3157 397 265 41 6 chr15 8848423 8848593 -76847161 - L1ME1 LINE L1 -2987 3228 3053 1270 219 20 68 chr15 8848635 8848705 -76847049 - L1ME1 LINE L1 -5142 1254 1182 757 208 0 8 chr15 8848705 8848835 -76846919 - FLAM_A SINE Alu -4 129 1 1270 219 20 68 chr15 8848835 8849348 -76846406 - L1ME1 LINE L1 -5214 1182 699 1066 235 81 86 chr15 8849352 8849963 -76845791 + LTR19C LTR ERV1 1 779 0 1812 265 60 19 chr15 8849987 8850023 -76845731 - L1ME1 LINE L1 -5715 681 648 1605 204 10 10 chr15 8850023 8850327 -76845427 - AluJo SINE Alu -8 304 1 1812 265 60 19 chr15 8850327 8850912 -76844842 - L1ME1 LINE L1 -5748 648 35 526 260 110 34 chr15 8850965 8851319 -76844435 - L1MC5 LINE L1 -83 7878 7498 346 195 61 12 chr15 8851323 8851405 -76844349 + MER58A DNA MER1_type 5 90 -17 198 167 0 0 chr15 8851954 8851990 -76843764 + CT-rich Low_complexity Low_complexity 1 36 0 2412 107 0 0 chr15 8851991 8852301 -76843453 - AluSg SINE Alu 0 310 1 616 251 84 15 chr15 8853025 8853228 -76842526 + L2 LINE L2 2949 3165 -148 216 319 34 34 chr15 8853278 8853397 -76842357 - L2 LINE L2 -10 3303 3185 3909 161 32 42 chr15 8853697 8854303 -76841451 + LTR39 LTR ERV1 1 599 -184 2191 128 3 0 chr15 8854303 8854609 -76841145 - AluSx SINE Alu -5 307 1 3909 161 32 42 chr15 8854609 8854793 -76840961 + LTR39 LTR ERV1 599 783 0 1044 257 83 48 chr15 8856107 8856686 -76839068 + L1ME1 LINE L1 823 1421 -4988 3609 241 66 22 chr15 8856801 8857117 -76838637 + L1ME1 LINE L1 4180 4481 -1945 234 0 0 0 chr15 8857117 8857143 -76838611 + (CA)n Simple_repeat Simple_repeat 2 27 0 3609 241 66 22 chr15 8857143 8858489 -76837265 + L1ME1 LINE L1 4481 5952 -474 2173 114 6 22 chr15 8858489 8858804 -76836950 + AluSg SINE Alu 1 310 0 3609 241 66 22 chr15 8858804 8859281 -76836473 + L1ME1 LINE L1 5952 6407 -19 365 357 65 18 chr15 8859412 8859639 -76836115 - MIR SINE MIR -14 248 4 370 136 0 30 chr15 8861126 8861192 -76834562 + MLT1A1 LTR MaLR 4 67 -298 930 189 0 0 chr15 8861196 8861365 -76834389 + MLT1A1 LTR MaLR 197 365 0 954 248 18 5 chr15 8861967 8862185 -76833569 + MER58A DNA MER1_type 2 222 -2 2347 87 0 19 chr15 8862975 8863284 -76832470 - AluY SINE Alu -8 303 1 573 261 172 0 chr15 8863671 8863874 -76831880 + MIR SINE MIR 21 258 -4 1929 117 0 53 chr15 8864365 8864712 -76831042 + AluSq SINE Alu 1 331 0 190 326 95 0 chr15 8864941 8865036 -76830718 + L2 LINE L2 3175 3278 -35 788 228 14 9 chr15 8865036 8865247 -76830507 + MER96B DNA MER1_type? 1 212 -205 275 317 145 21 chr15 8865499 8865644 -76830110 + MIR SINE MIR 22 184 -78 2774 234 76 43 chr15 8867096 8868404 -76827350 - L1MC5 LINE L1 -49 7912 6551 311 328 40 27 chr15 8868537 8868833 -76826921 - L1 LINE L1 -1818 4328 4029 204 40 0 0 chr15 8868856 8868881 -76826873 + (CA)n Simple_repeat Simple_repeat 2 26 0 2790 77 26 3 chr15 8868883 8869274 -76826480 - L1PA10 LINE L1 -1 6167 5768 12546 194 48 9 chr15 8869280 8874707 -76821047 - L1PB1 LINE L1 -1 6866 1093 3297 221 62 9 chr15 8874711 8875671 -76820083 - L1PB1 LINE L1 -5818 1045 36 3817 100 35 7 chr15 8875681 8876236 -76819518 - L1P4 LINE L1 -387 5781 5188 2611 45 0 13 chr15 8876236 8876545 -76819209 + AluY SINE Alu 1 305 -6 3817 100 35 7 chr15 8876545 8877027 -76818727 - L1P4 LINE L1 -980 5188 4721 424 298 36 42 chr15 8877099 8877267 -76818487 - L1M4 LINE L1 -2251 3895 3729 1745 136 4 0 chr15 8877292 8877565 -76818189 - L1PA15 LINE L1 0 6165 5892 260 330 36 21 chr15 8877595 8877928 -76817826 - L1M4 LINE L1 -2439 3707 3370 347 195 49 0 chr15 8878572 8878654 -76817100 - Tigger5 DNA MER2_type 0 2323 2238 344 164 14 14 chr15 8878704 8878777 -76816977 - Tigger5 DNA MER2_type 0 2323 2251 2139 113 7 0 chr15 8880322 8880613 -76815141 + AluSq SINE Alu 1 293 -20 653 256 27 70 chr15 8880717 8881348 -76814406 + L1MC4a LINE L1 6683 7214 -636 395 207 96 114 chr15 8881767 8882144 -76813610 + L1MC5 LINE L1 7560 7929 -32 314 289 82 15 chr15 8882703 8882838 -76812916 + L1MB4 LINE L1 3638 3781 -2365 297 289 74 13 chr15 8882908 8883057 -76812697 + MLT1J LTR MaLR 344 501 -10 245 219 16 0 chr15 8883064 8883128 -76812626 + L1MB4 LINE L1 3856 3920 -2226 324 168 168 32 chr15 8883530 8883685 -76812069 + L1MB4 LINE L1 4524 4699 -1447 438 172 0 33 chr15 8884472 8884594 -76811160 + GA-rich Low_complexity Low_complexity 1 118 0 2120 109 10 0 chr15 8884878 8885171 -76810583 + AluSx SINE Alu 1 296 -16 927 154 80 28 chr15 8885348 8885804 -76809950 + L1MB4 LINE L1 5190 5863 -317 3238 136 0 6 chr15 8885804 8886304 -76809450 + LOR1a LTR ERV1 1 497 0 1075 179 39 8 chr15 8886304 8886538 -76809216 + L1MB4 LINE L1 5922 6162 -18 255 276 27 70 chr15 8886689 8886874 -76808880 + L1ME LINE L1 5539 5715 -406 22 0 0 0 chr15 8887140 8887162 -76808592 + AT_rich Low_complexity Low_complexity 1 22 0 450 267 73 42 chr15 8888124 8888289 -76807465 - L2 LINE L2 0 3313 3144 712 156 32 219 chr15 8888756 8888902 -76806852 + L1MD3 LINE L1 7564 7609 -386 2154 126 0 0 chr15 8888902 8889203 -76806551 + AluSg SINE Alu 1 301 -9 712 156 32 219 chr15 8889203 8889403 -76806351 + L1MD3 LINE L1 7609 7845 -150 327 236 22 0 chr15 8889433 8889522 -76806232 - U8 snRNA snRNA -8 128 38 312 214 0 14 chr15 8890685 8890755 -76804999 - MER8 DNA MER2_type -170 69 1 312 247 137 71 chr15 8891195 8891420 -76804334 - MIR SINE MIR -28 234 3 829 143 0 15 chr15 8891738 8891871 -76803883 + FLAM_C SINE Alu 2 132 -1 23 33 0 0 chr15 8891938 8891968 -76803786 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr15 8892088 8892112 -76803642 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr15 8892172 8892217 -76803537 + AT_rich Low_complexity Low_complexity 1 45 0 2123 97 4 0 chr15 8892846 8893146 -76802608 - AluSq SINE Alu 0 303 3 833 68 25 17 chr15 8893160 8893278 -76802476 - AluY SINE Alu -15 296 178 2146 133 3 0 chr15 8894210 8894511 -76801243 + AluSx SINE Alu 1 302 -10 2198 120 0 13 chr15 8894586 8894887 -76800867 + AluSq SINE Alu 1 297 -16 25 0 0 0 chr15 8895086 8895111 -76800643 + AT_rich Low_complexity Low_complexity 1 25 0 258 280 0 13 chr15 8895702 8895777 -76799977 + L3 LINE CR1 916 989 -588 378 0 0 0 chr15 8896212 8896254 -76799500 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 88 0 0 chr15 8897329 8897386 -76798368 + AT_rich Low_complexity Low_complexity 1 57 0 1917 164 0 3 chr15 8898105 8898409 -76797345 + AluSx SINE Alu 1 303 -9 196 305 171 12 chr15 8898588 8898752 -76797002 + L2 LINE L2 2598 2787 -527 729 231 0 8 chr15 8900629 8900763 -76794991 - FLAM_A SINE Alu 0 133 1 887 265 106 19 chr15 8901392 8901807 -76793947 + L2 LINE L2 1742 2192 -1122 1829 133 24 7 chr15 8902203 8902497 -76793257 - AluJb SINE Alu -7 305 7 666 189 8 16 chr15 8902597 8902719 -76793035 - FLAM_C SINE Alu -12 121 1 2138 129 0 13 chr15 8902775 8903085 -76792669 + AluSx SINE Alu 1 306 -6 237 333 0 24 chr15 8903309 8903393 -76792361 + L3b LINE CR1 1272 1353 -230 200 317 24 81 chr15 8903474 8903597 -76792157 - L2 LINE L2 -2 3270 3155 2014 141 3 0 chr15 8903598 8903889 -76791865 + AluSx SINE Alu 1 292 -20 284 104 0 21 chr15 8904431 8904479 -76791275 - MADE1 DNA Mariner 0 80 34 493 286 104 10 chr15 8905136 8905328 -76790426 - L2 LINE L2 0 3313 3104 460 171 13 0 chr15 8905379 8905455 -76790299 - MER33 DNA MER1_type -246 78 2 2200 99 0 3 chr15 8907665 8907979 -76787775 + AluY SINE Alu 1 313 0 1196 174 15 0 chr15 8908234 8908429 -76787325 - AluJo SINE Alu -111 201 4 231 303 91 24 chr15 8910836 8911001 -76784753 - MIR SINE MIR -11 251 76 22 0 0 0 chr15 8911350 8911372 -76784382 + AT_rich Low_complexity Low_complexity 1 22 0 673 216 40 0 chr15 8911633 8911781 -76783973 + MER5A DNA MER1_type 1 154 -35 2621 53 0 0 chr15 8912291 8912594 -76783160 - AluY SINE Alu -8 303 1 222 258 0 0 chr15 8913737 8913799 -76781955 + CT-rich Low_complexity Low_complexity 1 62 0 2553 211 42 24 chr15 8913977 8914604 -76781150 + L1MC4a LINE L1 7159 7796 -12 * 7022 215 69 12 chr15 8914594 8916250 -76779504 + L1MD1 LINE L1 3196 5049 -1193 216 0 0 0 chr15 8916250 8916274 -76779480 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 7022 215 69 12 chr15 8916274 8917184 -76778570 + L1MD1 LINE L1 5049 5906 -336 5401 172 7 0 chr15 8917285 8918239 -76777515 - L1P LINE L1 -850 5296 4336 434 263 249 37 chr15 8918644 8918941 -76776813 - L2 LINE L2 -1 3271 2912 213 263 40 0 chr15 8919091 8919167 -76776587 - MIR SINE MIR -26 236 158 1418 180 11 27 chr15 8919345 8919606 -76776148 - AluSx SINE Alu -53 259 3 1678 263 93 21 chr15 8919675 8920436 -76775318 - L1MEc LINE L1 -3116 3099 2284 1120 117 47 12 chr15 8920439 8920610 -76775144 - AluSg/x SINE Alu -7 303 127 1851 115 29 48 chr15 8920615 8920790 -76774964 - AluSx SINE Alu -1 311 143 2161 99 6 10 chr15 8920790 8921102 -76774652 - AluY SINE Alu 0 311 1 1851 115 29 48 chr15 8921102 8921238 -76774516 - AluSx SINE Alu -169 143 6 1376 259 67 117 chr15 8921242 8921455 -76774299 - L1MEc LINE L1 -4070 2326 2104 624 98 87 0 chr15 8921455 8921547 -76774207 - HY3 scRNA scRNA -1 100 1 1376 259 67 117 chr15 8921547 8921746 -76774008 - L1MEc LINE L1 -4292 2104 1897 1841 148 16 16 chr15 8921746 8922051 -76773703 + AluSx SINE Alu 5 309 -3 1376 259 67 117 chr15 8922051 8922968 -76772786 - L1MEc LINE L1 -4499 1897 1062 * 2338 212 95 95 chr15 8922966 8923287 -76772467 - L1MD2 LINE L1 -8 6234 5915 2210 128 77 8 chr15 8923287 8923638 -76772116 + THE1C LTR MaLR 1 375 0 2338 212 95 95 chr15 8923638 8924515 -76771239 - L1MD2 LINE L1 -327 5915 5049 311 275 225 14 chr15 8925151 8925289 -76770465 - L1MEc LINE L1 -5901 304 138 373 293 123 98 chr15 8925301 8925447 -76770307 - L1MEd LINE L1 -5556 563 422 2083 137 0 3 chr15 8925447 8925753 -76770001 + AluSg1 SINE Alu 1 305 -4 373 293 123 98 chr15 8925753 8926094 -76769660 - L1MEd LINE L1 -5697 422 64 2155 138 0 0 chr15 8926094 8926399 -76769355 - AluSx SINE Alu -3 309 5 1691 164 34 17 chr15 8927102 8927395 -76768359 + L1PB3 LINE L1 5855 6152 -2 482 198 22 11 chr15 8927570 8927661 -76768093 + AluJo SINE Alu 2 93 -219 182 148 0 0 chr15 8927663 8927690 -76768064 + MIR SINE MIR 222 248 -14 966 184 58 34 chr15 8927722 8927929 -76767825 + AluJo SINE Alu 82 293 -19 265 264 61 56 chr15 8928111 8928685 -76767069 + L1MC4 LINE L1 3718 7630 -412 535 283 126 12 chr15 8928723 8928970 -76766784 + L1ME3A LINE L1 5484 5758 -404 413 213 71 8 chr15 8928972 8929100 -76766654 + L1ME3A LINE L1 5791 5929 -241 597 298 105 39 chr15 8929288 8929651 -76766103 + MLT1J2 LTR MaLR 62 448 -2 2340 117 24 35 chr15 8929692 8930067 -76765687 + THE1C LTR MaLR 3 373 -2 11691 99 14 32 chr15 8930069 8931679 -76764075 + THE1C-int LTR MaLR 1 1580 0 2141 101 44 83 chr15 8931682 8932069 -76763685 + THE1C LTR MaLR 4 375 0 297 265 59 82 chr15 8932246 8932465 -76763289 + L1MC/D LINE L1 5332 5545 -2263 241 248 165 15 chr15 8932619 8932752 -76763002 + L1MC/D LINE L1 5668 5820 -1988 313 290 21 14 chr15 8933312 8933457 -76762297 + (TCTA)n Simple_repeat Simple_repeat 2 147 0 462 136 0 0 chr15 8933595 8933676 -76762078 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 430 243 5 60 chr15 8933685 8933870 -76761884 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1670 244 93 14 chr15 8934547 8935052 -76760702 + L1M4 LINE L1 4463 5007 -1139 211 245 6 37 chr15 8935080 8935243 -76760511 + (TG)n Simple_repeat Simple_repeat 1 158 0 250 254 209 15 chr15 8935831 8935965 -76759789 + MIR SINE MIR 89 248 -14 268 146 0 0 chr15 8935972 8936020 -76759734 + L1MA3 LINE L1 6258 6305 0 1626 228 97 43 chr15 8936723 8937261 -76758493 - MLT1F1 LTR MaLR 0 567 1 419 216 69 99 chr15 8937575 8937717 -76758037 + LTR37B LTR ERV1 185 319 -149 2267 59 3 53 chr15 8937717 8938020 -76757734 + AluY SINE Alu 1 288 -23 419 216 69 99 chr15 8938020 8938109 -76757645 + LTR37B LTR ERV1 319 409 -59 225 310 16 93 chr15 8939924 8940053 -76755701 - MIR SINE MIR -130 132 14 809 286 102 52 chr15 8940173 8940297 -76755457 + L1MC4 LINE L1 7129 7245 -797 2371 84 0 7 chr15 8940297 8940596 -76755158 + AluSc SINE Alu 1 297 -12 809 286 102 52 chr15 8940596 8941248 -76754506 + L1MC4 LINE L1 7245 8042 0 47 44 0 0 chr15 8941924 8941992 -76753762 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 8942383 8942425 -76753329 + AT_rich Low_complexity Low_complexity 1 42 0 2652 204 25 57 chr15 8942753 8943459 -76752295 + L1MC4a LINE L1 4617 5300 -846 * 5141 144 36 4 chr15 8943451 8945021 -76750733 + L1MA4 LINE L1 4487 6110 -190 693 143 34 0 chr15 8945625 8945744 -76750010 + L1MD1 LINE L1 6118 6240 -2 297 250 26 0 chr15 8946409 8946485 -76749269 + MER5A DNA MER1_type 29 106 -83 219 226 19 0 chr15 8946544 8946597 -76749157 + MIR SINE MIR 133 186 -76 636 227 129 12 chr15 8947281 8947444 -76748310 + MER58A DNA MER1_type 42 223 -1 301 373 35 35 chr15 8947453 8947654 -76748100 - L3 LINE CR1 -920 657 457 457 302 38 19 chr15 8947662 8947821 -76747933 - MIR3 SINE MIR -15 193 32 381 285 106 31 chr15 8949647 8949903 -76745851 + L1MC4a LINE L1 5452 5726 -2082 231 146 0 0 chr15 8951251 8951292 -76744462 + LTR66 LTR ERVL 399 439 -171 301 245 39 65 chr15 8951322 8951477 -76744277 + L1MC4a LINE L1 5847 5997 -1811 313 277 76 0 chr15 8951580 8951699 -76744055 + L1ME4a LINE L1 5991 6118 -3 629 293 22 0 chr15 8952059 8952240 -76743514 - L1 LINE L1 -3452 2694 2510 1252 272 92 52 chr15 8953647 8953920 -76741834 + L1ME3 LINE L1 4855 5116 -1050 1943 166 0 0 chr15 8953920 8954222 -76741532 + AluSx SINE Alu 2 303 -9 1252 272 92 52 chr15 8954222 8955179 -76740575 + L1ME3 LINE L1 5116 6166 0 249 274 106 58 chr15 8955378 8955432 -76740322 + L2 LINE L2 2657 2707 -565 2104 110 17 0 chr15 8955432 8955731 -76740023 + AluSx SINE Alu 1 304 -8 249 274 106 58 chr15 8955731 8956078 -76739676 + L2 LINE L2 2707 3077 -195 29 47 0 0 chr15 8956605 8956648 -76739106 + AT_rich Low_complexity Low_complexity 1 43 0 35 24 0 0 chr15 8956705 8956747 -76739007 + AT_rich Low_complexity Low_complexity 1 42 0 186 143 79 16 chr15 8956754 8956880 -76738874 + (TA)n Simple_repeat Simple_repeat 1 134 0 1948 232 64 76 chr15 8957517 8957824 -76737930 - L1MC4 LINE L1 -1 7807 7498 6267 45 0 0 chr15 8957824 8958527 -76737227 - L1PA7 LINE L1 -11 6143 5441 1948 232 64 76 chr15 8958527 8959127 -76736627 - L1MC4 LINE L1 -310 7498 6895 851 184 48 0 chr15 8959666 8959813 -76735941 - FRAM SINE Alu -14 162 9 1221 276 75 51 chr15 8959887 8960500 -76735254 + L2 LINE L2 2310 2937 -377 3550 122 48 59 chr15 8960845 8960982 -76734772 + MER7C DNA MER2_type 1 138 -2890 2259 55 21 0 chr15 8960982 8961271 -76734483 - AluY SINE Alu -14 297 3 3550 122 48 59 chr15 8961271 8961742 -76734012 + MER7C DNA MER2_type 138 602 0 274 318 93 0 chr15 8962430 8962537 -76733217 + L2 LINE L2 3145 3261 -11 666 274 74 55 chr15 8964144 8964725 -76731029 - L1MC4 LINE L1 -517 5647 5268 993 275 90 14 chr15 8966147 8966514 -76729240 + MLT1I LTR MaLR 1 395 -14 268 256 58 0 chr15 8966527 8966613 -76729141 + L2 LINE L2 2188 2278 -1036 476 316 54 0 chr15 8966619 8966787 -76728967 + L2 LINE L2 2082 2258 -1056 375 23 0 0 chr15 8966944 8966988 -76728766 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 111 0 0 chr15 8967081 8967108 -76728646 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 884 153 15 0 chr15 8968269 8968400 -76727354 - AluSg/x SINE Alu -46 266 134 1093 103 0 0 chr15 8968400 8968545 -76727209 - AluSc SINE Alu -4 305 161 901 83 0 0 chr15 8968547 8968655 -76727099 - AluSq/x SINE Alu -203 109 2 672 136 0 75 chr15 8969171 8969318 -76726436 + AluSg SINE Alu 2 137 -173 2211 95 0 0 chr15 8969424 8969708 -76726046 + AluY SINE Alu 18 301 -10 1666 155 17 24 chr15 8969845 8970135 -76725619 - AluJb SINE Alu -17 295 8 428 114 143 0 chr15 8970282 8970352 -76725402 - AluJ/FRAM SINE Alu -17 295 216 278 231 0 15 chr15 8970617 8970682 -76725072 - AluSg/x SINE Alu -53 249 186 1262 195 43 14 chr15 8970787 8971325 -76724429 + LTR1B LTR ERV1 233 826 0 180 111 0 0 chr15 8971366 8971393 -76724361 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 261 108 0 0 chr15 8971398 8971435 -76724319 + MLT2D LTR ERVL 378 414 0 873 229 10 5 chr15 8971435 8971640 -76724114 + HERVL-D LTR ERVL 1 206 -5448 1531 187 63 3 chr15 8971710 8971994 -76723760 + HERVL-D LTR ERVL 380 680 -5084 1463 127 17 68 chr15 8971996 8972288 -76723466 - LTR23 LTR ERV1 0 437 161 589 200 82 0 chr15 8972366 8972501 -76723253 - LTR23 LTR ERV1 -291 146 1 1194 167 14 5 chr15 8972526 8972747 -76723007 + HERVL-D LTR ERVL 679 901 -4863 1973 254 43 42 chr15 8972885 8973096 -76722658 - L1M4 LINE L1 -2465 3681 3472 2413 79 0 3 chr15 8973096 8973400 -76722354 + AluY SINE Alu 1 303 -8 1973 254 43 42 chr15 8973400 8973994 -76721760 - L1M4 LINE L1 -2674 3472 2875 1813 253 33 33 chr15 8973984 8974590 -76721164 - L1MCb LINE L1 -4882 1163 558 * 448 274 111 66 chr15 8974673 8974899 -76720855 - L1MCb LINE L1 -5481 564 329 243 255 43 78 chr15 8974913 8975054 -76720700 - L1MCb LINE L1 -5789 256 121 1123 283 52 71 chr15 8975060 8975777 -76719977 - MER21B LTR ERV1 -137 726 24 1546 127 5 0 chr15 8976090 8976303 -76719451 + AluSg/x SINE Alu 68 281 -29 4018 74 6 4 chr15 8976304 8976793 -76718961 + LTR2B LTR ERV1 1 490 0 432 37 0 0 chr15 8976794 8976848 -76718906 + (CATAA)n Simple_repeat Simple_repeat 1 54 0 1777 216 35 0 chr15 8976849 8977191 -76718563 - ERVL LTR ERVL -4360 1404 1051 629 122 218 27 chr15 8977192 8977339 -76718415 - MER4C LTR ERV1 0 465 291 275 29 0 229 chr15 8977390 8977460 -76718294 - MER4A LTR ERV1 -305 359 306 1563 153 63 39 chr15 8977468 8977802 -76717952 - MER4A LTR ERV1 -322 342 1 548 181 211 0 chr15 8977802 8977935 -76717819 - ERVL LTR ERVL -4711 1053 893 961 55 55 0 chr15 8977938 8978066 -76717688 + MER30 DNA MER1_type 4 138 -92 2263 81 7 0 chr15 8978066 8978350 -76717404 - AluY SINE Alu -17 294 9 2562 68 0 0 chr15 8978842 8979152 -76716602 - AluY SINE Alu -1 310 1 282 238 62 0 chr15 8979301 8979381 -76716373 + L1ME3 LINE L1 5550 5634 -536 654 256 84 9 chr15 8979384 8979599 -76716155 + L1ME3 LINE L1 5733 5963 -199 234 221 122 28 chr15 8980761 8980893 -76714861 + MIR SINE MIR 53 203 -59 1776 151 4 0 chr15 8980948 8981226 -76714528 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr15 8981231 8981254 -76714500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 347 228 43 0 chr15 8981677 8981769 -76713985 + L1M4 LINE L1 3863 3958 -2188 631 196 43 0 chr15 8981776 8981914 -76713840 + L1MC1 LINE L1 6128 6271 -62 551 149 33 66 chr15 8981914 8982021 -76713733 + L1MC1 LINE L1 6206 6322 -11 2046 124 0 7 chr15 8982027 8982340 -76713414 + AluSc SINE Alu 1 311 0 2312 78 0 13 chr15 8982366 8982673 -76713081 + AluY SINE Alu 1 303 -8 2436 55 0 19 chr15 8983606 8983916 -76711838 + AluY SINE Alu 1 304 -7 2387 67 3 3 chr15 8984554 8984851 -76710903 - AluY SINE Alu -14 297 1 674 99 10 0 chr15 8985472 8985573 -76710181 - LTR1B LTR ERV1 -724 102 1 1836 213 28 14 chr15 8985628 8985985 -76709769 - MLT2B2 LTR ERVL -54 461 100 271 194 237 0 chr15 8986052 8986145 -76709609 - MLT2B2 LTR ERVL -400 115 1 3662 228 129 29 chr15 8986203 8987816 -76707938 - L1MDb LINE L1 -4666 1740 6 2285 65 45 3 chr15 8987978 8988269 -76707485 + AluY SINE Alu 1 303 -8 22 0 0 0 chr15 8988328 8988350 -76707404 + AT_rich Low_complexity Low_complexity 1 22 0 717 269 62 88 chr15 8988355 8988897 -76706857 + HAL1 LINE L1 1059 1584 -923 2834 121 45 17 chr15 8988897 8989319 -76706435 + MER57B LTR ERV1 1 434 0 717 269 62 88 chr15 8989319 8989401 -76706353 + HAL1 LINE L1 1584 1667 -840 232 284 31 0 chr15 8989427 8989502 -76706252 - MER20B DNA MER1_type -5 214 135 2020 178 109 5 chr15 8989734 8990155 -76705599 - MLT1C LTR MaLR 0 467 3 888 97 24 16 chr15 8990591 8990715 -76705039 + AluY SINE Alu 1 125 -186 2409 73 0 3 chr15 8991086 8991387 -76704367 + AluY SINE Alu 1 300 -11 1452 137 5 0 chr15 8992173 8992378 -76703376 - L1MC1 LINE L1 -6 6327 6122 190 120 20 60 chr15 8992425 8992475 -76703279 + MIR SINE MIR 107 154 -108 972 158 0 19 chr15 8992484 8992665 -76703089 + FRAM SINE Alu 1 176 0 474 91 0 15 chr15 8994298 8994364 -76701390 - Alu SINE Alu -243 66 2 452 194 21 0 chr15 8994963 8995056 -76700698 - MER103 DNA DNA -21 145 51 301 275 18 37 chr15 8995102 8995211 -76700543 + MER5C DNA MER1_type 18 124 -200 1519 135 191 44 chr15 8995673 8995917 -76699837 + MER47A DNA MER2_type 1 208 -2115 234 0 0 0 chr15 8995917 8995943 -76699811 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 2090 115 3 7 chr15 8995944 8996232 -76699522 - AluSp SINE Alu -26 287 1 1519 135 191 44 chr15 8996232 8996304 -76699450 + MER47A DNA MER2_type 207 366 0 2258 69 38 0 chr15 8997104 8997392 -76698362 - AluY SINE Alu -8 303 5 297 128 0 0 chr15 8997396 8997443 -76698311 + (T)n Simple_repeat Simple_repeat 1 47 0 21 89 0 0 chr15 8997969 8998025 -76697729 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 8998302 8998330 -76697424 + AT_rich Low_complexity Low_complexity 1 28 0 2254 86 0 0 chr15 8998732 8999052 -76696702 - AluSg SINE Alu 0 321 2 185 81 0 54 chr15 9000323 9000360 -76695394 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 867 243 96 35 chr15 9000621 9001016 -76694738 + LTR37A LTR ERV1 8 426 0 2072 100 0 31 chr15 9002046 9002336 -76693418 - AluY SINE Alu -13 298 18 218 211 158 0 chr15 9002931 9003007 -76692747 + MIR SINE MIR 113 200 -62 207 247 185 0 chr15 9003293 9003374 -76692380 + L2 LINE L2 3139 3234 -38 288 303 91 23 chr15 9004238 9004411 -76691343 - MIR SINE MIR -62 146 5 1575 90 172 4 chr15 9004486 9004742 -76691012 + AluJo SINE Alu 1 299 -3 2146 186 28 2 chr15 9005623 9006059 -76689695 - L1 LINE L1 -2369 3777 3331 2210 81 7 7 chr15 9006062 9006360 -76689394 - AluY SINE Alu -9 302 5 495 33 0 0 chr15 9006371 9006432 -76689322 + (CA)n Simple_repeat Simple_repeat 2 62 0 22 56 0 0 chr15 9006529 9006565 -76689189 + GC_rich Low_complexity Low_complexity 1 36 0 1962 97 10 34 chr15 9007441 9007739 -76688015 + AluSq SINE Alu 1 291 -22 2058 86 0 95 chr15 9007740 9008077 -76687677 - AluSg SINE Alu -5 305 1 2355 68 0 10 chr15 9008260 9008586 -76687168 - AluY SINE Alu 0 311 1 1350 122 5 0 chr15 9008586 9008775 -76686979 + Charlie3 DNA MER1_type 2513 2702 -8 1304 146 5 0 chr15 9008777 9008997 -76686757 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 9009072 9009357 -76686397 - AluSx SINE Alu -28 284 1 3640 203 44 20 chr15 9009357 9010317 -76685437 - L1MB3 LINE L1 -724 5460 4475 1642 167 7 24 chr15 9010899 9011193 -76684561 + AluJo SINE Alu 1 289 -23 243 233 29 24 chr15 9011245 9011329 -76684425 + MIR SINE MIR 69 153 -55 6426 13 1 0 chr15 9013011 9013724 -76682030 - L1PA3 LINE L1 0 6155 5442 429 70 0 0 chr15 9014057 9014114 -76681640 + (CA)n Simple_repeat Simple_repeat 1 57 0 598 246 40 6 chr15 9015389 9015564 -76680190 - MIR SINE MIR -31 231 51 2418 54 0 0 chr15 9015698 9015977 -76679777 + AluY SINE Alu 1 279 -32 233 29 29 0 chr15 9015977 9016011 -76679743 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2071 138 0 0 chr15 9016772 9017070 -76678684 + AluSx SINE Alu 3 300 -12 237 216 0 20 chr15 9017070 9017121 -76678633 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 9017160 9017203 -76678551 + AT_rich Low_complexity Low_complexity 1 43 0 267 173 77 0 chr15 9017603 9017655 -76678099 - L1ME4a LINE L1 -72 6049 5994 454 294 18 12 chr15 9017665 9017828 -76677926 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 2230 109 3 10 chr15 9017888 9018199 -76677555 + AluSx SINE Alu 1 309 -3 521 199 352 0 chr15 9018199 9018415 -76677339 - L1ME4a LINE L1 -303 5818 5527 1099 253 143 104 chr15 9018685 9019696 -76676058 + L1ME4a LINE L1 4409 5380 -741 2383 96 0 3 chr15 9019696 9019998 -76675756 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9019998 9020369 -76675385 + L1ME4a LINE L1 5380 5735 -386 606 103 0 0 chr15 9020369 9020456 -76675298 + L1MA3 LINE L1 6219 6305 0 1099 253 143 104 chr15 9020456 9020577 -76675177 + L1ME4a LINE L1 5735 5850 -271 2185 85 0 85 chr15 9020577 9020906 -76674848 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9020906 9021003 -76674751 + L1ME4a LINE L1 5850 6110 -11 1534 182 26 77 chr15 9021523 9021914 -76673840 + MLT1A2 LTR MaLR 4 374 0 252 299 41 0 chr15 9022381 9022478 -76673276 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 9023457 9023772 -76671982 - AluY SINE Alu 0 311 1 1590 80 40 18 chr15 9024057 9024282 -76671472 + MER30 DNA MER1_type 1 230 0 953 157 42 237 chr15 9024373 9024523 -76671231 - L1MD3 LINE L1 -10 7985 7808 667 189 15 8 chr15 9024523 9024655 -76671099 + U8 snRNA snRNA 4 136 0 953 157 42 237 chr15 9024655 9024879 -76670875 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 9024879 9024903 -76670851 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1990 114 0 0 chr15 9024904 9025167 -76670587 - AluSg SINE Alu -47 263 1 953 157 42 237 chr15 9025167 9025313 -76670441 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 9025785 9025943 -76669811 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 9026036 9026066 -76669688 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 9026833 9026861 -76668893 + AT_rich Low_complexity Low_complexity 1 28 0 2091 119 3 0 chr15 9028242 9028536 -76667218 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 9029164 9029209 -76666545 + AT_rich Low_complexity Low_complexity 1 45 0 830 150 0 15 chr15 9029514 9029647 -76666107 - FLAM_C SINE Alu -1 132 2 328 258 130 47 chr15 9029965 9030178 -76665576 + MIR SINE MIR 3 225 -37 1872 76 126 14 chr15 9030178 9030455 -76665299 - AluY SINE Alu -3 308 1 418 311 11 11 chr15 9031417 9031600 -76664154 - L1ME LINE L1 -400 5721 5539 1108 176 33 20 chr15 9031748 9031992 -76663762 - L1MB4 LINE L1 -12 6168 5922 3185 145 0 6 chr15 9031992 9032490 -76663264 - LOR1a LTR ERV1 0 497 3 1345 141 58 21 chr15 9032620 9032862 -76662892 + L1PB4 LINE L1 5905 6155 -1 2301 75 0 0 chr15 9032871 9033187 -76662567 + AluY SINE Alu 1 316 0 316 307 103 16 chr15 9033531 9033909 -76661845 - L1ME4a LINE L1 -2 6119 5709 235 328 54 37 chr15 9033915 9034210 -76661544 + L2 LINE L2 2766 3067 -205 2095 136 31 31 chr15 9035105 9035465 -76660289 + MLT1A1 LTR MaLR 6 365 0 3524 171 88 1 chr15 9035505 9036195 -76659559 + L1MB7 LINE L1 5377 6126 -58 399 157 0 0 chr15 9036195 9036265 -76659489 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 347 264 23 0 chr15 9036266 9036353 -76659401 - L1MC4 LINE L1 -1339 6703 6615 2353 98 0 19 chr15 9036405 9036722 -76659032 + AluSp SINE Alu 1 311 -2 2204 112 13 13 chr15 9037213 9037517 -76658237 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr15 9037608 9037636 -76658118 + AT_rich Low_complexity Low_complexity 1 28 0 679 189 8 8 chr15 9037651 9037773 -76657981 + FLAM_C SINE Alu 6 127 -16 24 0 0 0 chr15 9037865 9037889 -76657865 + AT_rich Low_complexity Low_complexity 1 24 0 366 236 27 45 chr15 9038215 9038325 -76657429 + L1ME4a LINE L1 5743 5850 -271 2333 88 3 0 chr15 9038333 9038629 -76657125 + AluSp SINE Alu 1 297 -16 2263 103 0 0 chr15 9038802 9039103 -76656651 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 9039335 9039356 -76656398 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 9039658 9039697 -76656057 + AT_rich Low_complexity Low_complexity 1 39 0 1411 159 12 78 chr15 9043873 9044089 -76651665 - AluJo SINE Alu 0 312 124 1880 110 28 41 chr15 9044089 9044379 -76651375 + AluSp SINE Alu 2 287 -26 1411 159 12 78 chr15 9044379 9044495 -76651259 - AluJo SINE Alu -188 124 2 1816 132 13 16 chr15 9044530 9044833 -76650921 + AluSp SINE Alu 5 306 -7 523 198 9 0 chr15 9044837 9044943 -76650811 - AluJb SINE Alu -204 108 2 1708 139 23 16 chr15 9044979 9045282 -76650472 + AluSp SINE Alu 6 310 -3 284 136 0 0 chr15 9045282 9045326 -76650428 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 9045317 9045756 -76649998 + MLT1D LTR MaLR 44 505 0 1751 194 23 33 chr15 9046295 9046693 -76649061 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 9046693 9046740 -76649014 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 9046740 9046883 -76648871 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 9047366 9047674 -76648080 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 9050700 9050733 -76645021 + AT_rich Low_complexity Low_complexity 1 33 0 518 204 138 13 chr15 9050776 9050928 -76644826 - MIR SINE MIR -64 198 28 2055 105 13 33 chr15 9051081 9051385 -76644369 - AluSx SINE Alu -12 300 3 342 67 0 0 chr15 9052549 9052594 -76643160 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 204 0 0 chr15 9052606 9052655 -76643099 + MIR SINE MIR 184 232 -30 944 247 127 33 chr15 9052685 9053199 -76642555 - HAL1 LINE L1 -877 1630 1069 632 237 117 94 chr15 9053200 9053724 -76642030 - MLT1H1 LTR MaLR 0 555 19 245 239 127 25 chr15 9053742 9053939 -76641815 - HAL1 LINE L1 -1437 1070 854 2253 117 3 0 chr15 9053966 9054265 -76641489 - AluSp SINE Alu -13 300 1 1846 144 3 31 chr15 9054329 9054663 -76641091 + AluJo SINE Alu 1 326 0 346 286 93 65 chr15 9054936 9055226 -76640528 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 9055609 9055826 -76639928 + MER20 DNA MER1_type 1 219 0 2525 60 0 13 chr15 9055956 9056258 -76639496 + AluY SINE Alu 5 302 -9 270 0 0 0 chr15 9056696 9056726 -76639028 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 9056726 9057005 -76638749 - AluY SINE Alu -27 284 1 2064 124 10 0 chr15 9058468 9058480 -76637274 - AluY SINE Alu -17 294 284 213 65 0 0 chr15 9058480 9058511 -76637243 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2064 124 10 0 chr15 9058511 9058789 -76636965 - AluY SINE Alu -27 284 1 334 251 99 41 chr15 9061446 9061469 -76634285 + MIR SINE MIR 12 32 -230 2211 105 7 3 chr15 9061469 9061764 -76633990 + AluY SINE Alu 1 296 -15 334 251 99 41 chr15 9061764 9061911 -76633843 + MIR SINE MIR 32 192 -70 225 364 0 0 chr15 9062842 9062941 -76632813 + MIR SINE MIR 31 129 -79 284 241 78 26 chr15 9062998 9063114 -76632640 + L2 LINE L2 3146 3267 -5 233 173 58 0 chr15 9064450 9064502 -76631252 + L1MC4a LINE L1 5885 5939 -1869 300 53 0 0 chr15 9064505 9064543 -76631211 + (TG)n Simple_repeat Simple_repeat 2 39 0 424 222 104 47 chr15 9064729 9064899 -76630855 + MIR SINE MIR 16 192 -58 1926 145 0 26 chr15 9067024 9067327 -76628427 + AluSx SINE Alu 3 297 -15 225 250 102 0 chr15 9067378 9067466 -76628288 + MIR SINE MIR 96 192 -70 917 175 0 18 chr15 9068172 9068338 -76627416 + 7SLRNA srpRNA srpRNA 95 257 -63 240 86 0 0 chr15 9069464 9069499 -76626255 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 35 0 0 chr15 9072833 9072862 -76622892 + AT_rich Low_complexity Low_complexity 1 29 0 240 83 0 0 chr15 9073532 9073568 -76622186 - MER5A DNA MER1_type -80 109 74 2316 60 3 13 chr15 9073572 9073871 -76621883 - AluY SINE Alu -15 296 1 303 196 0 0 chr15 9073886 9073932 -76621822 + Tigger3(Golem) DNA MER2_type 4 49 -2980 844 124 0 0 chr15 9073936 9074057 -76621697 - Tigger3(Golem) DNA MER2_type -746 2283 2163 399 198 10 79 chr15 9074054 9074155 -76621599 - Tigger3(Golem) DNA MER2_type -2869 160 67 * 2344 80 3 13 chr15 9074155 9074468 -76621286 - AluY SINE Alu -1 310 1 232 37 0 0 chr15 9074469 9074496 -76621258 - Tigger3(Golem) DNA MER2_type -2947 82 56 * 3955 122 69 36 chr15 9074494 9074563 -76621191 + Tigger3(Golem) DNA MER2_type 2276 2341 -687 1907 165 0 3 chr15 9074563 9074860 -76620894 - AluJb SINE Alu -16 296 1 3955 122 69 36 chr15 9074860 9075248 -76620506 + Tigger3(Golem) DNA MER2_type 2341 2768 -260 2380 101 3 0 chr15 9075248 9075555 -76620199 + AluSc SINE Alu 1 308 -1 3955 122 69 36 chr15 9075555 9075824 -76619930 + Tigger3(Golem) DNA MER2_type 2768 3027 -1 828 297 93 13 chr15 9075913 9076310 -76619444 - LTR16A LTR ERVL -6 444 16 2445 43 4 0 chr15 9076436 9076736 -76619018 + AluY SINE Alu 1 301 0 2000 113 0 0 chr15 9077192 9077449 -76618305 + AluSx SINE Alu 1 257 -55 296 289 107 8 chr15 9078605 9078726 -76617028 - L2 LINE L2 -4 3268 3136 282 309 89 30 chr15 9078826 9078994 -76616760 - MIR SINE MIR 0 262 85 1711 175 49 0 chr15 9079043 9079329 -76616425 + AluJb SINE Alu 1 300 -12 253 235 122 0 chr15 9079329 9079418 -76616336 - MER3 DNA MER1_type -3 159 56 370 197 197 16 chr15 9079573 9079700 -76616054 - L1MC4a LINE L1 -1883 5925 5776 * 1422 253 63 15 chr15 9079697 9079754 -76616000 + L1MC/D LINE L1 5377 5430 -2378 2165 122 0 0 chr15 9079754 9080050 -76615704 + AluSx SINE Alu 1 296 -16 1422 253 63 15 chr15 9080050 9080388 -76615366 + L1MC/D LINE L1 5430 5791 -2017 24 53 0 0 chr15 9080619 9080657 -76615097 + AT_rich Low_complexity Low_complexity 1 38 0 2373 94 0 0 chr15 9080740 9081047 -76614707 + AluSg1 SINE Alu 1 307 -2 253 283 123 47 chr15 9081768 9081874 -76613880 - L2 LINE L2 0 3313 3200 2044 152 0 0 chr15 9083052 9083348 -76612406 - AluSx SINE Alu -11 301 6 2788 137 98 7 chr15 9083508 9084049 -76611705 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9084050 9084265 -76611489 - L1PA13 LINE L1 0 6163 5950 209 57 29 0 chr15 9085613 9085648 -76610106 + (TTA)n Simple_repeat Simple_repeat 1 36 0 879 169 6 62 chr15 9085697 9085875 -76609879 - AluJb SINE Alu -144 168 1 2072 114 4 4 chr15 9085920 9086221 -76609533 - AluSx SINE Alu 0 303 3 889 182 40 45 chr15 9087231 9087407 -76608347 - MER20 DNA MER1_type 0 219 45 2538 64 0 3 chr15 9088140 9088452 -76607302 - AluY SINE Alu 0 311 1 315 283 91 43 chr15 9088491 9088678 -76607076 + MIR SINE MIR 36 231 -31 504 285 124 0 chr15 9089141 9089334 -76606420 - MIR SINE MIR -5 257 41 2329 51 3 37 chr15 9089337 9089632 -76606122 + AluY SINE Alu 5 289 -22 1047 179 66 0 chr15 9090869 9091081 -76604673 + AluJb SINE Alu 1 226 -86 805 104 9 0 chr15 9091268 9091374 -76604380 - AluSq/x SINE Alu -206 107 1 592 143 0 17 chr15 9091670 9091789 -76603965 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 2227 118 0 7 chr15 9091790 9092096 -76603658 - AluSx SINE Alu -8 304 1 2772 139 98 7 chr15 9092251 9092792 -76602962 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9092793 9093008 -76602746 - L1PA13 LINE L1 0 6163 5950 2668 7 0 0 chr15 9093425 9093706 -76602048 - AluYa5 SINE Alu -9 302 22 229 282 0 0 chr15 9094605 9094676 -76601078 + T-rich Low_complexity Low_complexity 1 71 0 907 154 6 82 chr15 9094727 9094909 -76600845 - AluJo SINE Alu -144 168 1 2383 94 0 3 chr15 9094952 9095259 -76600495 - AluSx SINE Alu -4 308 3 290 298 107 8 chr15 9096077 9096198 -76599556 - L2 LINE L2 -4 3268 3136 262 270 78 43 chr15 9096351 9096466 -76599288 - MIR SINE MIR -59 203 85 433 270 57 0 chr15 9096499 9096515 -76599239 - MER3 DNA MER1_type 6 168 154 1777 170 49 0 chr15 9096515 9096803 -76598951 + AluJb SINE Alu 1 302 -10 433 270 57 0 chr15 9096803 9096945 -76598809 - MER3 DNA MER1_type -8 154 1 1236 159 15 0 chr15 9097349 9097544 -76598210 + AluJo SINE Alu 4 201 -111 313 326 126 23 chr15 9099819 9099994 -76595760 + L1MEd LINE L1 908 1100 -5019 427 189 14 0 chr15 9100008 9100082 -76595672 + MER33 DNA MER1_type 4 78 -246 529 285 104 10 chr15 9100131 9100324 -76595430 + L2 LINE L2 3103 3313 0 238 288 16 114 chr15 9101510 9101524 -76594230 + L2 LINE L2 2896 2910 -362 1997 130 0 18 chr15 9101524 9101844 -76593910 - AluSx SINE Alu 0 320 6 238 288 16 114 chr15 9101844 9102012 -76593742 + L2 LINE L2 2910 3061 -211 1350 179 0 17 chr15 9102384 9102618 -76593136 + AluSg/x SINE Alu 83 312 0 273 149 23 11 chr15 9103016 9103103 -76592651 + (TG)n Simple_repeat Simple_repeat 1 88 0 2475 74 0 3 chr15 9103472 9103783 -76591971 + AluY SINE Alu 1 310 -1 229 178 22 0 chr15 9104201 9104246 -76591508 + Alu SINE Alu 121 166 -137 248 250 31 0 chr15 9104480 9104544 -76591210 + MLT1K LTR MaLR 484 549 -39 1968 122 7 0 chr15 9104698 9104969 -76590785 - AluSq SINE Alu -6 307 35 191 352 57 9 chr15 9105249 9105354 -76590400 + L2 LINE L2 3199 3308 -5 531 268 89 89 chr15 9105727 9105842 -76589912 + MIR SINE MIR 25 142 -120 1762 117 0 0 chr15 9105842 9106073 -76589681 + AluSx SINE Alu 58 288 -24 531 268 89 89 chr15 9106073 9106181 -76589573 + MIR SINE MIR 141 248 -14 1880 206 86 112 chr15 9106226 9106488 -76589266 + L1MC4a LINE L1 6045 6312 -1496 1441 72 111 5 chr15 9106488 9106696 -76589058 - MER30 DNA MER1_type 0 230 1 1880 206 86 112 chr15 9106696 9107273 -76588481 + L1MC4a LINE L1 6312 6862 -946 1853 164 0 26 chr15 9107549 9107874 -76587880 - AluSx SINE Alu 0 312 1 289 294 17 26 chr15 9107986 9108109 -76587645 - L1M4 LINE L1 -2005 4141 4020 739 219 26 0 chr15 9108125 9108280 -76587474 + AluJb SINE Alu 137 295 -17 227 317 0 49 chr15 9108307 9108449 -76587305 - L1M4 LINE L1 -2310 3836 3702 513 316 66 13 chr15 9108450 9108678 -76587076 - MIR SINE MIR -10 252 13 2068 123 0 19 chr15 9109041 9109349 -76586405 - AluY SINE Alu -9 302 1 2184 126 0 19 chr15 9109556 9109873 -76585881 - AluSx SINE Alu -1 311 1 299 261 112 8 chr15 9111394 9111528 -76584226 + MIR SINE MIR 21 168 -94 366 286 164 0 chr15 9111561 9111701 -76584053 + MER5A DNA MER1_type 1 163 -26 416 233 52 9 chr15 9112565 9112681 -76583073 + MIR3 SINE MIR 52 172 -36 314 343 22 7 chr15 9113896 9114033 -76581721 + L2 LINE L2 2250 2388 -926 323 304 59 59 chr15 9114883 9115087 -76580667 - MLT1L LTR MaLR -407 208 5 635 213 41 6 chr15 9116246 9116415 -76579339 + L1ME2 LINE L1 5986 6160 -4 2039 136 3 7 chr15 9116437 9116739 -76579015 + AluSx SINE Alu 1 301 -11 2007 97 104 0 chr15 9117370 9117639 -76578115 - AluSx SINE Alu -15 297 1 30 27 0 0 chr15 9117650 9117687 -76578067 + AT_rich Low_complexity Low_complexity 1 37 0 200 409 0 0 chr15 9118427 9118591 -76577163 + C-rich Low_complexity Low_complexity 1 164 0 * 449 292 0 52 chr15 9118475 9118714 -76577040 + CT-rich Low_complexity Low_complexity 1 226 0 450 340 0 12 chr15 9118842 9119178 -76576576 + CT-rich Low_complexity Low_complexity 1 332 0 181 378 92 0 chr15 9119381 9119500 -76576254 - MER5B DNA MER1_type -32 146 17 200 346 185 0 chr15 9119836 9119966 -76575788 - MIR3 SINE MIR -2 206 53 802 127 6 22 chr15 9120323 9120504 -76575250 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1559 137 17 0 chr15 9120506 9120739 -76575015 - AluSp SINE Alu -1 312 76 265 247 87 10 chr15 9120788 9120955 -76574799 + L1P5 LINE L1 5292 5474 -647 627 223 97 24 chr15 9121675 9121881 -76573873 - MLT1J LTR MaLR 0 511 291 461 31 0 16 chr15 9122189 9122253 -76573501 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1846 112 8 4 chr15 9122268 9122518 -76573236 - AluSx SINE Alu -61 251 1 707 218 77 0 chr15 9122698 9122868 -76572886 + MER5A DNA MER1_type 5 187 -2 653 293 27 40 chr15 9123084 9123412 -76572342 + L1MC4 LINE L1 7719 8042 0 250 208 130 0 chr15 9123889 9123966 -76571788 - L1 LINE L1 -1310 4836 4750 2342 90 0 7 chr15 9123988 9124288 -76571466 - AluY SINE Alu -13 298 1 709 110 9 0 chr15 9124293 9124402 -76571352 - MLT1B LTR MaLR -218 172 63 2388 94 0 0 chr15 9124544 9124841 -76570913 - AluSg1 SINE Alu -12 297 1 290 299 65 60 chr15 9125956 9126157 -76569597 + MIR3 SINE MIR 2 203 -5 1917 171 0 3 chr15 9127382 9127691 -76568063 + AluJo SINE Alu 1 308 -4 369 250 85 80 chr15 9128954 9129142 -76566612 + MIR SINE MIR 31 219 -43 391 262 27 86 chr15 9129305 9129492 -76566262 + MER5A DNA MER1_type 7 182 -7 359 243 97 10 chr15 9129932 9130035 -76565719 + MIR3 SINE MIR 11 122 -86 317 43 21 0 chr15 9130558 9130605 -76565149 + (CA)n Simple_repeat Simple_repeat 2 49 0 1672 117 12 4 chr15 9130848 9131095 -76564659 + AluSx SINE Alu 52 300 -12 2355 128 113 18 chr15 9131392 9131783 -76563971 - MSTA LTR MaLR 0 428 1 319 304 186 14 chr15 9131792 9132088 -76563666 - L2 LINE L2 -348 2966 2620 497 135 11 0 chr15 9132458 9132547 -76563207 + (TG)n Simple_repeat Simple_repeat 1 90 0 243 293 73 49 chr15 9133019 9133142 -76562612 - L2 LINE L2 -2141 1173 1048 509 271 269 22 chr15 9133222 9133683 -76562071 - L2 LINE L2 -340 2974 2400 584 320 51 22 chr15 9133991 9134408 -76561346 + L2 LINE L2 2654 3083 -189 372 43 0 0 chr15 9134535 9134581 -76561173 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 337 310 158 19 chr15 9135040 9135263 -76560491 - MIR SINE MIR -6 256 4 3570 168 60 172 chr15 9135380 9135622 -76560132 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 9135622 9135647 -76560107 + (CA)n Simple_repeat Simple_repeat 2 26 0 3570 168 60 172 chr15 9135647 9135670 -76560084 + L1MB7 LINE L1 4255 4279 -1899 2280 131 0 0 chr15 9135670 9135982 -76559772 + AluSx SINE Alu 1 312 0 3570 168 60 172 chr15 9135982 9136376 -76559378 + L1MB7 LINE L1 4279 4716 -1462 2002 148 7 0 chr15 9136376 9136680 -76559074 + AluJb SINE Alu 1 306 -6 3570 168 60 172 chr15 9136680 9137010 -76558744 + L1MB7 LINE L1 4716 5081 -1097 1178 190 5 0 chr15 9137010 9137205 -76558549 + AluJb SINE Alu 96 291 -21 3570 168 60 172 chr15 9137205 9137409 -76558345 + L1MB7 LINE L1 5081 5154 -1024 2271 114 0 10 chr15 9137409 9137715 -76558039 + AluSq SINE Alu 1 303 -10 3570 168 60 172 chr15 9137715 9138027 -76557727 + L1MB7 LINE L1 5154 5499 -679 * 5695 36 0 0 chr15 9138024 9138724 -76557030 - L1PA4 LINE L1 -1441 4705 4006 7580 33 3 1 chr15 9138724 9140176 -76555578 + L1PA4 LINE L1 4702 6155 0 2990 134 61 78 chr15 9140178 9140482 -76555272 + L1MB7 LINE L1 5494 5802 -382 1906 155 7 0 chr15 9140482 9140778 -76554976 + AluJo SINE Alu 1 298 -14 2990 134 61 78 chr15 9140778 9141176 -76554578 + L1MB7 LINE L1 5802 6184 0 191 219 49 0 chr15 9141785 9141826 -76553928 - L2 LINE L2 -6 3307 3265 388 238 30 0 chr15 9142002 9142103 -76553651 + L1ME LINE L1 5714 5817 -304 748 284 60 0 chr15 9142717 9142932 -76552822 + MIR SINE MIR 5 232 -30 305 183 11 53 chr15 9142944 9143037 -76552717 - FRAM SINE Alu -68 98 41 233 189 0 0 chr15 9143063 9143100 -76552654 - Alu SINE Alu -12 121 85 1621 175 3 21 chr15 9144301 9144586 -76551168 + AluJo SINE Alu 10 289 -23 311 251 34 19 chr15 9144632 9144739 -76551015 + MIR3 SINE MIR 59 170 -38 294 29 0 0 chr15 9146748 9146783 -76548971 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr15 9148927 9148958 -76546796 + AT_rich Low_complexity Low_complexity 1 31 0 1592 172 62 14 chr15 9149891 9150181 -76545573 - AluJo SINE Alu -7 305 2 329 294 143 53 chr15 9150197 9150462 -76545292 - L1M4 LINE L1 -1984 4162 3874 1712 156 4 7 chr15 9150974 9151243 -76544511 - AluJo SINE Alu -43 269 2 21 0 0 0 chr15 9151252 9151273 -76544481 + AT_rich Low_complexity Low_complexity 1 21 0 1777 180 3 7 chr15 9151691 9151997 -76543757 - AluJo SINE Alu -7 305 1 2146 119 10 0 chr15 9152054 9152348 -76543406 + AluSx SINE Alu 5 301 -11 341 289 10 10 chr15 9205296 9205393 -76490361 - MIR SINE MIR -102 160 64 334 291 39 21 chr15 9205417 9205623 -76490131 - MIR SINE MIR -5 257 10 1366 182 42 6 chr15 9205642 9205955 -76489799 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr15 9205963 9205984 -76489770 + AT_rich Low_complexity Low_complexity 1 21 0 2185 119 0 7 chr15 9206414 9206717 -76489037 - AluSx SINE Alu -7 305 5 330 321 128 5 chr15 9209723 9209910 -76485844 - MIR SINE MIR -6 256 47 180 0 0 0 chr15 9211660 9211680 -76484074 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr15 9212102 9212124 -76483630 + AT_rich Low_complexity Low_complexity 1 22 0 487 188 21 0 chr15 9212156 9212252 -76483502 + MER5A DNA MER1_type 9 106 -83 432 0 0 0 chr15 9212274 9212322 -76483432 + (TG)n Simple_repeat Simple_repeat 2 49 0 1930 112 48 0 chr15 9212489 9212777 -76482977 - AluSg SINE Alu 0 301 1 271 352 25 76 chr15 9214421 9214657 -76481097 + L2 LINE L2 3034 3257 -15 25 0 0 0 chr15 9214832 9214857 -76480897 + AT_rich Low_complexity Low_complexity 1 25 0 926 264 105 54 chr15 9217106 9217659 -76478095 + L1ME4a LINE L1 5302 5882 -239 2059 130 3 23 chr15 9217953 9218260 -76477494 - AluSx SINE Alu -11 301 1 2390 76 0 10 chr15 9218954 9219256 -76476498 - AluY SINE Alu -12 299 1 720 230 158 27 chr15 9219632 9219854 -76475900 + MIR SINE MIR 12 262 0 511 139 13 0 chr15 9219965 9220044 -76475710 + MADE1 DNA Mariner 1 80 0 393 303 70 14 chr15 9220044 9220186 -76475568 - MIR SINE MIR -111 151 2 444 181 0 0 chr15 9220230 9220313 -76475441 - AluJo SINE Alu 0 312 230 1239 174 0 0 chr15 9220321 9220505 -76475249 - AluJo SINE Alu -123 189 6 859 204 11 27 chr15 9220874 9221060 -76474694 + MER5A DNA MER1_type 1 183 -6 299 278 126 13 chr15 9222321 9222472 -76473282 - MIR SINE MIR -6 256 89 1069 227 84 80 chr15 9222685 9223125 -76472629 - MLT1J1 LTR MaLR 0 446 5 857 348 116 29 chr15 9223782 9224466 -76471288 + L3 LINE CR1 74 816 -761 194 314 10 39 chr15 9224612 9224714 -76471040 + L2 LINE L2 1337 1435 -1879 226 243 0 40 chr15 9225310 9225384 -76470370 + GA-rich Low_complexity Low_complexity 2 72 0 306 306 41 0 chr15 9225484 9225582 -76470172 - L2 LINE L2 -30 3242 3141 190 284 0 54 chr15 9226559 9226633 -76469121 - L2 LINE L2 -10 3262 3193 357 264 253 0 chr15 9226691 9226869 -76468885 - MIR SINE MIR -10 252 30 2208 219 158 28 chr15 9227204 9227437 -76468317 - L1MC4 LINE L1 -451 7591 7390 2500 63 0 3 chr15 9227437 9227739 -76468015 + AluY SINE Alu 1 301 -10 2208 219 158 28 chr15 9227739 9227949 -76467805 - L1MC4 LINE L1 -652 7390 7209 195 114 0 0 chr15 9227949 9227984 -76467770 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2208 219 158 28 chr15 9227984 9228265 -76467489 - L1MC4 LINE L1 -833 7209 6771 2391 44 0 0 chr15 9228598 9228872 -76466882 - AluY SINE Alu -8 303 30 2198 107 0 0 chr15 9232588 9232894 -76462860 + AluSx SINE Alu 1 306 0 23 0 0 0 chr15 9233400 9233423 -76462331 + AT_rich Low_complexity Low_complexity 1 23 0 2610 61 0 0 chr15 9233764 9234074 -76461680 - AluY SINE Alu -1 310 1 21 0 0 0 chr15 9234665 9234686 -76461068 + AT_rich Low_complexity Low_complexity 1 21 0 2620 64 0 0 chr15 9234865 9235176 -76460578 - AluY SINE Alu 0 311 1 254 281 10 42 chr15 9235920 9236016 -76459738 - MIR SINE MIR -56 206 114 1244 194 94 65 chr15 9236041 9236520 -76459234 + L1MC5 LINE L1 7388 7880 -81 2041 141 3 3 chr15 9236529 9236841 -76458913 - AluSx SINE Alu 0 312 1 2263 115 3 0 chr15 9236947 9237251 -76458503 + AluSp SINE Alu 3 307 -6 2075 109 0 53 chr15 9238519 9238841 -76456913 + AluSq SINE Alu 1 305 -8 392 301 44 15 chr15 9239051 9239187 -76456567 - MIR SINE MIR -120 142 3 2108 149 95 0 chr15 9239193 9239561 -76456193 - MER57A LTR ERV1 0 403 1 2441 64 0 7 chr15 9239843 9240141 -76455613 - AluY SINE Alu -15 296 1 248 250 32 105 chr15 9241488 9241612 -76454142 - L2 LINE L2 0 3313 3199 455 309 63 11 chr15 9241681 9241856 -76453898 + MIR SINE MIR 1 184 -78 2248 145 6 6 chr15 9242355 9242692 -76453062 + MER1B DNA MER1_type 1 337 0 437 242 83 8 chr15 9244722 9244842 -76450912 - MER5B DNA MER1_type 0 178 50 258 282 58 63 chr15 9244724 9244898 -76450856 + MER5A DNA MER1_type 17 189 0 * 1822 140 51 14 chr15 9245861 9246154 -76449600 + AluJb SINE Alu 1 304 -8 380 267 61 15 chr15 9246247 9246378 -76449376 - L2 LINE L2 0 3272 3136 2081 111 4 7 chr15 9246491 9246815 -76448939 + AluSc SINE Alu 1 323 0 251 304 13 0 chr15 9246849 9246928 -76448826 - L2 LINE L2 -663 2651 2572 246 128 0 0 chr15 9247743 9247782 -76447972 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 2013 135 0 20 chr15 9248951 9249254 -76446500 + AluSx SINE Alu 1 297 -15 315 105 0 0 chr15 9249269 9249326 -76446428 + (GA)n Simple_repeat Simple_repeat 2 58 0 2637 62 0 0 chr15 9249424 9249733 -76446021 - AluY SINE Alu 0 311 3 587 311 70 4 chr15 9249966 9250194 -76445560 + MIR SINE MIR 6 248 -14 258 32 0 0 chr15 9250219 9250250 -76445504 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 212 74 132 chr15 9250269 9250423 -76445331 + L1ME4a LINE L1 5769 5930 -191 195 42 0 0 chr15 9250423 9250447 -76445307 + (TC)n Simple_repeat Simple_repeat 1 24 0 396 212 74 132 chr15 9250447 9250655 -76445099 + L1ME4a LINE L1 5930 6110 -11 216 0 0 0 chr15 9250866 9250890 -76444864 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr15 9251499 9251523 -76444231 + (A)n Simple_repeat Simple_repeat 1 24 0 310 259 30 0 chr15 9251558 9251693 -76444061 + CT-rich Low_complexity Low_complexity 2 140 0 2659 42 0 0 chr15 9251787 9252096 -76443658 + AluY SINE Alu 1 309 -2 375 313 83 14 chr15 9252187 9252404 -76443350 - MIR SINE MIR -24 238 7 910 284 59 66 chr15 9253114 9253770 -76441984 - L1MC4a LINE L1 -345 5817 5279 235 296 28 83 chr15 9254458 9254566 -76441188 + L2 LINE L2 3190 3291 -22 * 364 226 58 58 chr15 9254565 9254702 -76441052 - L2 LINE L2 0 3313 3177 285 75 0 0 chr15 9258823 9258863 -76436891 + (TG)n Simple_repeat Simple_repeat 2 41 0 618 266 38 61 chr15 9259566 9259629 -76436125 + MIR SINE MIR 6 69 -193 2183 112 3 3 chr15 9259629 9259942 -76435812 + AluSp SINE Alu 1 313 0 618 266 38 61 chr15 9259942 9260141 -76435613 + MIR SINE MIR 69 262 0 2006 107 39 4 chr15 9260227 9260508 -76435246 + AluSg SINE Alu 1 291 -19 269 217 188 0 chr15 9262793 9262862 -76432892 - L2 LINE L2 -2 3270 3189 7622 55 9 0 chr15 9263395 9264908 -76430846 - L1PA7 LINE L1 -2 6152 4630 15209 82 17 9 chr15 9264908 9267032 -76428722 + L1P LINE L1 2641 4781 -1365 22 35 0 0 chr15 9267251 9267280 -76428474 + AT_rich Low_complexity Low_complexity 1 29 0 2503 60 0 13 chr15 9267681 9267996 -76427758 - AluY SINE Alu 0 311 1 327 315 167 12 chr15 9269109 9269271 -76426483 + MIR SINE MIR 36 222 -40 24 0 0 0 chr15 9269288 9269312 -76426442 + AT_rich Low_complexity Low_complexity 1 24 0 521 332 14 27 chr15 9273678 9273898 -76421856 + L3 LINE CR1 1347 1563 -14 297 281 0 24 chr15 9273975 9274057 -76421697 - MIR SINE MIR -36 226 147 4011 213 56 35 chr15 9274471 9275416 -76420338 + L1M4 LINE L1 5 969 -5573 1277 193 37 15 chr15 9275440 9275709 -76420045 + LTR52 LTR ERVL 144 418 -3 4786 209 51 43 chr15 9275714 9276313 -76419441 + L1M4 LINE L1 3908 4501 -2143 2391 96 0 3 chr15 9276313 9276625 -76419129 + AluSp SINE Alu 1 311 -2 4786 209 51 43 chr15 9276625 9277348 -76418406 + L1M4 LINE L1 4501 5241 -1403 1599 181 77 14 chr15 9277352 9277639 -76418115 + AluJo SINE Alu 1 305 -7 917 213 48 0 chr15 9277640 9277847 -76417907 + L1M4 LINE L1 4548 4764 -1880 2869 216 40 7 chr15 9278243 9279408 -76416346 + L1 LINE L1 3 1375 -4516 342 300 59 41 chr15 9279458 9279628 -76416126 - MLT1K LTR MaLR -282 306 134 4997 196 20 10 chr15 9280028 9281065 -76414689 - L1 LINE L1 -1671 4475 3428 3553 179 32 7 chr15 9281071 9281757 -76413997 + L1 LINE L1 4343 5045 -925 451 269 93 84 chr15 9281760 9282094 -76413660 + MLT1K LTR MaLR 143 479 -109 1106 226 20 8 chr15 9282114 9282362 -76413392 - MLT1F1 LTR MaLR 0 567 317 999 226 92 38 chr15 9282567 9282828 -76412926 - MLT1F1 LTR MaLR -280 287 13 441 172 69 0 chr15 9282838 9282925 -76412829 + MLT1K LTR MaLR 494 586 -2 2442 66 3 3 chr15 9282959 9283262 -76412492 + AluY SINE Alu 1 303 -8 2171 128 0 0 chr15 9286044 9286348 -76409406 - AluSx SINE Alu -8 304 1 1924 156 0 3 chr15 9287518 9287807 -76407947 - AluSx SINE Alu -19 293 6 235 292 73 51 chr15 9287940 9288077 -76407677 + MIR3 SINE MIR 21 160 -48 222 299 87 39 chr15 9288172 9288299 -76407455 - MIR3 SINE MIR -61 147 15 2208 101 0 10 chr15 9288303 9288599 -76407155 - AluSq SINE Alu -20 293 1 272 326 105 0 chr15 9290055 9290193 -76405561 - MIR SINE MIR -65 143 35 495 186 0 0 chr15 9290203 9290305 -76405449 + CT-rich Low_complexity Low_complexity 3 104 0 622 269 96 0 chr15 9290542 9290698 -76405056 + MER45A DNA AcHobo 8 178 0 1303 239 95 26 chr15 9290818 9291282 -76404472 - L1ME3A LINE L1 -224 5929 5434 1224 110 22 16 chr15 9291312 9291494 -76404260 - AluSg/x SINE Alu -10 302 120 793 289 97 33 chr15 9291501 9292290 -76403464 - L1ME3A LINE L1 -743 5386 4530 1585 168 32 72 chr15 9292291 9292611 -76403143 + MLT1A1 LTR MaLR 5 336 -29 2578 118 91 30 chr15 9292611 9292806 -76402948 + MSTB1 LTR MaLR 1 183 -249 2222 89 3 7 chr15 9292806 9293109 -76402645 + AluSg SINE Alu 2 303 -7 2578 118 91 30 chr15 9293109 9293318 -76402436 + MSTB1 LTR MaLR 183 430 -2 1585 168 32 72 chr15 9293318 9293333 -76402421 + MLT1A1 LTR MaLR 336 350 -15 2139 137 3 0 chr15 9293333 9293639 -76402115 - AluJb SINE Alu -5 307 1 1585 168 32 72 chr15 9293639 9293678 -76402076 + MLT1A1 LTR MaLR 350 365 0 1543 256 120 36 chr15 9294200 9295057 -76400697 - L1ME3A LINE L1 -1958 4171 3243 * 5328 133 8 17 chr15 9295034 9296623 -76399131 - L1MA1 LINE L1 -243 6042 4471 1063 279 127 33 chr15 9296624 9297513 -76398241 - L1ME3A LINE L1 -2853 3276 2304 324 274 91 48 chr15 9297635 9297843 -76397911 - L1ME3A LINE L1 -3969 2341 2125 4361 118 20 3 chr15 9297843 9298497 -76397257 - Tigger4(Zombi) DNA MER2_type -1 2730 2066 1015 134 117 0 chr15 9298496 9298667 -76397087 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 410 289 90 56 chr15 9298686 9299041 -76396713 - L1MDa LINE L1 -4785 1344 1003 2455 67 0 3 chr15 9299041 9299339 -76396415 - AluY SINE Alu -14 297 1 410 289 90 56 chr15 9299339 9299723 -76396031 - L1MDa LINE L1 -5126 1003 562 886 187 34 9 chr15 9299723 9299909 -76395845 - MER20 DNA MER1_type -12 207 2 1739 174 6 40 chr15 9300787 9301114 -76394640 + LTR62 LTR ERVK 1 316 -403 2385 100 47 0 chr15 9301118 9301457 -76394297 - THE1A LTR MaLR 0 355 1 1733 72 4 0 chr15 9301457 9301692 -76394062 - THE1A-int LTR MaLR 0 1580 1345 2495 62 0 3 chr15 9301692 9301996 -76393758 + AluY SINE Alu 1 303 -8 934 211 93 117 chr15 9302180 9302729 -76393025 + MLT1F LTR MaLR 1 542 0 896 254 111 18 chr15 9302937 9303271 -76392483 + MLT1A1 LTR MaLR 1 365 0 210 281 49 49 chr15 9303611 9303693 -76392061 + MIR SINE MIR 30 111 -97 21 0 0 0 chr15 9304678 9304699 -76391055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 9306621 9306642 -76389112 + AT_rich Low_complexity Low_complexity 1 21 0 2389 55 7 3 chr15 9309973 9310263 -76385491 - AluY SINE Alu -20 291 1 474 259 149 18 chr15 9314886 9315114 -76380640 - MIR SINE MIR -3 259 2 363 341 24 24 chr15 9315226 9315352 -76380402 + MIR SINE MIR 25 150 -58 241 284 30 0 chr15 9315818 9315885 -76379869 + GA-rich Low_complexity Low_complexity 4 72 0 323 133 86 0 chr15 9316322 9316473 -76379281 + (TA)n Simple_repeat Simple_repeat 2 165 0 379 159 33 71 chr15 9316570 9316752 -76379002 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 320 117 98 0 chr15 9316761 9316924 -76378830 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 106 43 0 chr15 9316948 9316995 -76378759 + (TA)n Simple_repeat Simple_repeat 2 50 0 636 99 0 0 chr15 9316995 9317076 -76378678 - AluSg/x SINE Alu -23 287 207 3857 155 59 62 chr15 9317076 9318050 -76377704 + L1MB7 LINE L1 5211 6184 0 314 308 136 18 chr15 9318066 9318339 -76377415 + L1MC/D LINE L1 5438 5742 -2066 511 254 48 0 chr15 9318375 9318501 -76377253 - MIR SINE MIR 0 262 131 495 315 73 0 chr15 9318674 9318839 -76376915 + MIR SINE MIR 11 187 -75 3846 115 2 4 chr15 9318844 9319399 -76376355 + MER41A LTR ERV1 1 554 0 286 113 57 0 chr15 9319399 9319452 -76376302 + MER41A-int LTR ERV1 1 56 -7700 25 0 0 0 chr15 9319854 9319879 -76375875 + AT_rich Low_complexity Low_complexity 1 25 0 495 291 7 14 chr15 9320155 9320296 -76375458 - MER58A DNA MER1_type 0 140 1 341 270 50 38 chr15 9320389 9320551 -76375203 + MIR SINE MIR 45 205 -57 212 302 0 16 chr15 9321242 9321305 -76374449 - MIR SINE MIR -59 149 88 2115 153 32 19 chr15 9321451 9321862 -76373892 + L1PB4 LINE L1 5741 6156 0 2465 74 10 7 chr15 9322164 9322474 -76373280 + AluY SINE Alu 1 311 0 297 0 0 0 chr15 9323114 9323147 -76372607 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 489 76 0 0 chr15 9323835 9323901 -76371853 + (TG)n Simple_repeat Simple_repeat 2 67 0 948 162 0 0 chr15 9323918 9324054 -76371700 - FLAM_C SINE Alu -5 138 3 1566 169 41 31 chr15 9326268 9326558 -76369196 + AluJo SINE Alu 1 293 -19 211 273 45 57 chr15 9327793 9327881 -76367873 - L2 LINE L2 0 3272 3186 3752 121 19 3 chr15 9328160 9328745 -76367009 + MER7C DNA MER2_type 2 595 -7 201 245 0 19 chr15 9328982 9329035 -76366719 - MIR3 SINE MIR -6 202 151 268 324 61 4 chr15 9329186 9329312 -76366442 - MER5A DNA MER1_type -37 152 1 453 344 145 37 chr15 9330143 9330881 -76364873 - L2 LINE L2 -533 2781 1964 2109 78 0 21 chr15 9330891 9331174 -76364580 + AluY SINE Alu 35 311 0 794 256 124 42 chr15 9331260 9331710 -76364044 + MLT1J LTR MaLR 25 511 0 2288 107 7 3 chr15 9331971 9332280 -76363474 - AluSx SINE Alu -2 310 1 203 179 0 0 chr15 9333268 9333307 -76362447 + A-rich Low_complexity Low_complexity 1 39 0 1859 128 4 19 chr15 9333616 9333881 -76361873 + AluJo SINE Alu 4 264 -48 367 252 14 91 chr15 9334145 9334288 -76361466 - MIR3 SINE MIR -6 202 71 357 24 0 0 chr15 9336875 9336917 -76358837 + (CA)n Simple_repeat Simple_repeat 2 43 0 321 353 9 0 chr15 9338103 9338219 -76357535 + MIR3 SINE MIR 54 170 -38 351 359 111 11 chr15 9339291 9339472 -76356282 - MIR3 SINE MIR -5 203 5 2018 99 0 87 chr15 9340182 9340515 -76355239 + AluY SINE Alu 1 304 -7 181 290 16 32 chr15 9342195 9342257 -76353497 + L3b LINE CR1 1507 1567 -16 1027 178 61 4 chr15 9342685 9342916 -76352838 + L1MB3 LINE L1 5864 6107 -76 6991 48 22 0 chr15 9343211 9344269 -76351485 - L1PA6 LINE L1 0 6154 5084 350 288 93 0 chr15 9344289 9344407 -76351347 + MER94 DNA DNA 5 133 -1 399 192 212 0 chr15 9344514 9344613 -76351141 - Charlie4 DNA MER1_type -24 1937 1818 580 246 84 22 chr15 9344967 9345146 -76350608 + MIR SINE MIR 57 246 -16 529 298 63 54 chr15 9345211 9345736 -76350018 + L2 LINE L2 2725 3251 -62 285 262 131 16 chr15 9346955 9347077 -76348677 + MIR SINE MIR 28 163 -99 585 302 86 5 chr15 9347193 9347415 -76348339 + MIR SINE MIR 3 242 -20 265 262 36 24 chr15 9347676 9347760 -76347994 - L3b LINE CR1 -208 1375 1291 2254 108 10 0 chr15 9348619 9348914 -76346840 - AluSx SINE Alu -14 298 1 2159 93 59 3 chr15 9350357 9350646 -76345108 - AluSx SINE Alu -7 305 1 315 0 0 0 chr15 9350713 9350748 -76345006 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 651 241 23 0 chr15 9350784 9350958 -76344796 - MER105 DNA DNA -3 201 24 1389 147 39 108 chr15 9351035 9351423 -76344331 - MER46B DNA MER2_type 0 236 1 1865 140 71 9 chr15 9351628 9351950 -76343804 - MER2 DNA MER2_type 0 344 3 21 0 0 0 chr15 9352983 9353004 -76342750 + AT_rich Low_complexity Low_complexity 1 21 0 2443 42 0 0 chr15 9353625 9353939 -76341815 - AluY SINE Alu 0 314 1 205 138 0 0 chr15 9354462 9354491 -76341263 + (TGG)n Simple_repeat Simple_repeat 1 29 0 472 317 70 5 chr15 9354584 9354770 -76340984 + MIR SINE MIR 64 261 -1 241 308 110 0 chr15 9355275 9355366 -76340388 - MIR3 SINE MIR -103 105 5 225 287 93 8 chr15 9356673 9356802 -76338952 - L1ME4a LINE L1 -1 6120 5981 32 43 0 0 chr15 9356957 9357003 -76338751 + AT_rich Low_complexity Low_complexity 1 46 0 424 266 144 29 chr15 9359473 9359751 -76336003 - L1ME4a LINE L1 -875 5271 4962 2366 90 0 3 chr15 9360147 9360447 -76335307 - AluSg1 SINE Alu -10 299 1 2006 100 0 4 chr15 9360785 9361045 -76334709 + AluSx SINE Alu 22 280 -32 189 0 0 0 chr15 9361045 9361066 -76334688 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 373 251 25 31 chr15 9361086 9361249 -76334505 - HAL1 LINE L1 -842 1665 1504 2533 71 0 10 chr15 9361850 9362161 -76333593 - AluY SINE Alu -3 308 1 985 158 0 13 chr15 9363294 9363452 -76332302 - FRAM SINE Alu -7 159 4 982 328 119 39 chr15 9363498 9364424 -76331330 + L2 LINE L2 2222 3268 -4 2229 72 31 10 chr15 9366266 9366557 -76329197 + AluY SINE Alu 1 297 -14 1892 130 69 0 chr15 9366708 9366984 -76328770 + AluSx SINE Alu 1 295 -17 380 245 105 7 chr15 9369772 9369915 -76325839 + MIR SINE MIR 106 262 0 1039 123 7 0 chr15 9369916 9370062 -76325692 - AluSg/x SINE Alu -12 300 154 1992 91 4 4 chr15 9371195 9371449 -76324305 + AluSc SINE Alu 1 254 -55 22 0 0 0 chr15 9372891 9372913 -76322841 + AT_rich Low_complexity Low_complexity 1 22 0 1652 184 7 7 chr15 9374549 9374858 -76320896 - AluJo SINE Alu -3 309 1 571 282 79 0 chr15 9376199 9376401 -76319353 - L2 LINE L2 -1153 2161 1944 495 292 124 13 chr15 9380736 9381186 -76314568 + MLT1G LTR MaLR 41 523 -19 385 283 20 20 chr15 9381227 9381326 -76314428 + L2 LINE L2 3147 3245 -27 211 264 58 109 chr15 9381392 9381541 -76314213 - MIR SINE MIR -50 212 72 2377 105 0 3 chr15 9381541 9381854 -76313900 + AluSp SINE Alu 1 312 -1 211 264 58 109 chr15 9381854 9381878 -76313876 - MIR SINE MIR -190 72 48 24 32 0 0 chr15 9382676 9382707 -76313047 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr15 9383125 9383172 -76312582 + AT_rich Low_complexity Low_complexity 1 47 0 287 294 49 10 chr15 9384286 9384388 -76311366 + MIR SINE MIR 86 191 -71 461 304 22 40 chr15 9384579 9384773 -76310981 - MIR SINE MIR -54 208 20 522 124 0 11 chr15 9384807 9384896 -76310858 + L1MB1 LINE L1 6078 6165 -3 4042 59 47 0 chr15 9384932 9385602 -76310152 + L1PA8A LINE L1 5144 5836 -295 267 31 0 0 chr15 9385972 9386004 -76309750 + (TG)n Simple_repeat Simple_repeat 2 33 0 560 119 0 0 chr15 9386149 9386233 -76309521 + AluS SINE Alu 1 84 -228 2336 82 3 3 chr15 9386271 9386575 -76309179 + AluY SINE Alu 1 304 -7 217 244 0 0 chr15 9387024 9387065 -76308689 + (TG)n Simple_repeat Simple_repeat 2 42 0 977 124 51 0 chr15 9387855 9388033 -76307721 + Tigger3(Golem) DNA MER2_type 2842 3028 -1 202 143 95 0 chr15 9388153 9388195 -76307559 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 456 351 56 56 chr15 9388244 9388529 -76307225 - L2 LINE L2 0 3272 2988 271 352 33 0 chr15 9388819 9388910 -76306844 - L2 LINE L2 -234 3079 2986 * 833 320 142 19 chr15 9388900 9389485 -76306269 - L2 LINE L2 -924 2390 1734 188 329 13 13 chr15 9389533 9389609 -76306145 + L3b LINE CR1 1420 1495 -88 2351 74 3 26 chr15 9390636 9390947 -76304807 - AluY SINE Alu -7 304 1 382 202 73 32 chr15 9391050 9391174 -76304580 - L1MC4a LINE L1 -1909 5899 5771 2173 110 13 0 chr15 9391312 9391613 -76304141 - AluSx SINE Alu -7 305 1 336 202 35 79 chr15 9392245 9392359 -76303395 - L2 LINE L2 -1 3271 3163 490 0 0 0 chr15 9392471 9392532 -76303222 - L1PA14 LINE L1 -1 6160 6100 1199 67 7 0 chr15 9392567 9392751 -76303003 + AluY SINE Alu 134 318 0 318 283 222 6 chr15 9393795 9393975 -76301779 + L2 LINE L2 2298 2516 -798 1414 159 71 0 chr15 9394041 9394280 -76301474 - AluJo SINE Alu -13 299 44 317 346 110 2 chr15 9394447 9394675 -76301079 + L2 LINE L2 2715 2970 -302 369 340 54 14 chr15 9394695 9394842 -76300912 + MIR SINE MIR 110 262 0 427 235 38 8 chr15 9394989 9395121 -76300633 + MER104 DNA Tc2 31 166 -14 821 179 31 131 chr15 9395618 9395976 -76299778 - MER33 DNA MER1_type -1 323 2 2462 83 0 3 chr15 9396287 9396601 -76299153 + AluSq SINE Alu 1 313 0 204 351 0 0 chr15 9396683 9396740 -76299014 + L2 LINE L2 3202 3258 -14 273 57 0 0 chr15 9396814 9396849 -76298905 + (A)n Simple_repeat Simple_repeat 1 35 0 588 224 40 0 chr15 9396849 9396974 -76298780 - MER5B DNA MER1_type -48 130 1 314 186 14 14 chr15 9398793 9398863 -76296891 - L2 LINE L2 -12 3260 3191 223 268 118 81 chr15 9400601 9400847 -76294907 - L2 LINE L2 -726 2588 2334 1271 202 49 22 chr15 9401411 9401678 -76294076 + AluJo SINE Alu 1 274 -38 239 91 0 23 chr15 9401686 9401730 -76294024 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 668 188 28 6 chr15 9401758 9401934 -76293820 + GA-rich Low_complexity Low_complexity 1 180 0 1585 194 0 7 chr15 9402027 9402311 -76293443 + AluJb SINE Alu 1 282 -30 349 232 123 36 chr15 9403130 9403268 -76292486 + MIR SINE MIR 113 262 0 2272 33 33 4 chr15 9404818 9405125 -76290629 + AluY SINE Alu 1 315 0 462 264 56 8 chr15 9405127 9405252 -76290502 - L2 LINE L2 -3 3310 3180 1821 189 17 44 chr15 9406489 9406948 -76288806 + L1MB8 LINE L1 5723 6169 -9 2270 91 3 0 chr15 9407212 9407528 -76288226 + AluSp SINE Alu 1 317 0 1454 68 0 0 chr15 9407707 9407898 -76287856 + L1PA5 LINE L1 5964 6154 0 430 336 96 29 chr15 9408271 9408762 -76286992 + L2 LINE L2 1754 2277 -1037 422 300 140 42 chr15 9408765 9409167 -76286587 + L2 LINE L2 2594 3085 -187 1920 71 64 21 chr15 9409167 9409448 -76286306 - AluY SINE Alu -18 293 1 422 300 140 42 chr15 9409448 9409657 -76286097 + L2 LINE L2 3085 3272 0 612 261 0 0 chr15 9409740 9409882 -76285872 + Tigger3(Golem) DNA MER2_type 1 142 -2887 429 83 0 0 chr15 9409890 9409950 -76285804 + Tigger3(Golem) DNA MER2_type 2802 2861 -168 402 314 40 105 chr15 9410598 9410968 -76284786 - L1ME4a LINE L1 -224 5897 5552 183 337 58 12 chr15 9411415 9411501 -76284253 - L2 LINE L2 -960 2354 2265 2231 101 0 19 chr15 9413231 9413547 -76282207 - AluSg SINE Alu 0 310 1 282 256 103 0 chr15 9414459 9414537 -76281217 - MIR SINE MIR -170 92 7 188 277 0 46 chr15 9414701 9414766 -76280988 - MIR SINE MIR -181 81 20 997 240 27 15 chr15 9415570 9415872 -76279882 + L1MD3 LINE L1 6123 6344 0 2130 133 0 3 chr15 9416230 9416530 -76279224 + AluSx SINE Alu 1 299 -13 300 273 227 25 chr15 9416795 9417037 -76278717 - L3 LINE CR1 -6 1571 1281 646 317 182 14 chr15 9417102 9417841 -76277913 - L2 LINE L2 0 3313 2426 335 244 115 13 chr15 9417858 9418006 -76277748 - MIR SINE MIR -63 145 32 1462 280 118 37 chr15 9419097 9420108 -76275646 - HAL1 LINE L1 -7 2500 1408 429 282 141 5 chr15 9420525 9420731 -76275023 - HAL1 LINE L1 -2253 254 21 646 179 0 0 chr15 9421747 9421859 -76273895 - MER97b DNA MER1_type? -874 179 68 544 202 101 0 chr15 9421859 9422027 -76273727 - MER53 DNA DNA -4 185 1 1949 158 0 22 chr15 9422455 9422766 -76272988 + AluJo SINE Alu 9 312 0 340 214 97 45 chr15 9423008 9423162 -76272592 + MER103 DNA DNA 2 163 -3 192 97 0 0 chr15 9423344 9423375 -76272379 + (TG)n Simple_repeat Simple_repeat 2 32 0 2237 162 52 44 chr15 9423421 9423922 -76271832 - MLT1D LTR MaLR 0 505 1 230 178 22 0 chr15 9424307 9424352 -76271402 - MIR SINE MIR -92 170 125 382 343 66 11 chr15 9424730 9424911 -76270843 + MIR SINE MIR 22 212 -50 21 0 0 0 chr15 9425105 9425126 -76270628 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 141 0 chr15 9427057 9427156 -76268598 + MIR SINE MIR 66 178 -84 1682 143 19 4 chr15 9428161 9428419 -76267335 - AluJb SINE Alu -10 302 41 297 264 142 26 chr15 9428748 9429038 -76266716 + L2 LINE L2 2776 3090 -182 8046 174 25 15 chr15 9429083 9430561 -76265193 - L1PB1 LINE L1 -3 6148 4686 2056 86 47 0 chr15 9430561 9430840 -76264914 - AluY SINE Alu -19 292 1 8046 174 25 15 chr15 9430840 9431087 -76264667 - L1PB1 LINE L1 -1465 4686 4443 198 103 0 0 chr15 9431087 9431116 -76264638 + (TA)n Simple_repeat Simple_repeat 1 29 0 8046 174 25 15 chr15 9431116 9432148 -76263606 - L1PB1 LINE L1 -1708 4443 3371 251 292 56 14 chr15 9432168 9432240 -76263514 + L2 LINE L2 3121 3195 -77 2205 100 13 17 chr15 9433509 9433809 -76261945 + AluSx SINE Alu 1 299 -13 385 262 132 32 chr15 9434023 9434393 -76261361 - L1ME4a LINE L1 -1 6120 5714 529 151 0 11 chr15 9434520 9434613 -76261141 + U13 snRNA snRNA 13 104 0 285 284 0 0 chr15 9434615 9434689 -76261065 + A-rich Low_complexity Low_complexity 1 74 0 251 360 93 0 chr15 9434698 9434784 -76260970 - MER91A DNA MER1_type -10 186 93 353 270 135 44 chr15 9435443 9435695 -76260059 - L1ME4a LINE L1 -1278 4868 4594 3687 161 54 32 chr15 9435761 9436594 -76259160 - L1MB1 LINE L1 -22 6146 5296 213 209 0 0 chr15 9437977 9438020 -76257734 + MIR SINE MIR 98 140 -68 2217 101 0 0 chr15 9440181 9440497 -76255257 + AluSq SINE Alu 1 316 0 214 317 0 0 chr15 9441000 9441060 -76254694 + CT-rich Low_complexity Low_complexity 1 60 0 184 341 91 28 chr15 9443703 9443879 -76251875 - L2 LINE L2 -568 2746 2560 1599 226 12 6 chr15 9445528 9445864 -76249890 + MER58B DNA MER1_type 2 339 -2 3023 95 91 34 chr15 9446369 9446865 -76248889 - MER1A DNA MER1_type 0 527 4 189 132 0 0 chr15 9447896 9447934 -76247820 + (A)n Simple_repeat Simple_repeat 1 38 0 617 225 95 18 chr15 9447972 9448141 -76247613 + MER5A DNA MER1_type 8 189 0 329 296 55 45 chr15 9449166 9449365 -76246389 - MIR SINE MIR -58 204 4 649 290 190 16 chr15 9451694 9452015 -76243739 - L2 LINE L2 0 3313 2937 242 301 181 30 chr15 9452089 9452255 -76243499 + MIR SINE MIR 72 262 0 254 342 61 30 chr15 9452602 9452865 -76242889 + L2 LINE L2 2659 2929 -385 182 313 90 75 chr15 9453012 9453146 -76242608 + L2 LINE L2 3124 3259 -13 431 215 185 31 chr15 9456805 9456935 -76238819 - MIR SINE MIR -2 260 111 1264 253 132 17 chr15 9458263 9458855 -76236899 + Charlie7 DNA MER1_type 64 723 -1889 283 225 123 22 chr15 9458872 9459010 -76236744 + Charlie7 DNA MER1_type 2458 2609 -3 26 0 0 0 chr15 9459353 9459379 -76236375 + AT_rich Low_complexity Low_complexity 1 26 0 248 399 51 33 chr15 9459849 9460278 -76235476 + L2 LINE L2 2243 2679 -635 * 692 276 121 76 chr15 9460263 9460726 -76235028 - L2 LINE L2 -1 3312 2829 1749 137 29 14 chr15 9460981 9461258 -76234496 - AluSx SINE Alu -8 304 24 2143 125 20 0 chr15 9463954 9464259 -76231495 + AluSp SINE Alu 2 312 -1 1190 223 94 26 chr15 9464490 9464956 -76230798 + L1MC5 LINE L1 7085 7582 -379 892 153 0 0 chr15 9465094 9465231 -76230523 + FLAM_C SINE Alu 1 137 -6 270 251 113 31 chr15 9465234 9465429 -76230325 + L1MC5 LINE L1 7703 7913 -48 294 342 68 6 chr15 9466016 9466112 -76229642 + MIR SINE MIR 62 173 -89 1576 188 10 50 chr15 9466112 9466415 -76229339 - AluJb SINE Alu -21 291 1 294 342 68 6 chr15 9466415 9466479 -76229275 + MIR SINE MIR 173 232 -30 23 24 0 24 chr15 9466569 9466588 -76229166 + AT_rich Low_complexity Low_complexity 1 19 -21 1462 204 17 24 chr15 9466588 9466877 -76228877 - AluJo SINE Alu -25 287 1 23 24 0 24 chr15 9466877 9466898 -76228856 + AT_rich Low_complexity Low_complexity 19 40 0 330 302 10 10 chr15 9467779 9467875 -76227879 - L2 LINE L2 0 3313 3218 4077 206 44 38 chr15 9468749 9469300 -76226454 - L1MB1 LINE L1 -6 5986 5440 2319 95 7 0 chr15 9469300 9469606 -76226148 - AluY SINE Alu -3 308 1 4077 206 44 38 chr15 9469606 9471436 -76224318 - L1MB1 LINE L1 -552 5440 3622 2069 101 0 7 chr15 9471436 9471712 -76224042 + AluSx SINE Alu 1 274 -38 4077 206 44 38 chr15 9471712 9473906 -76221848 - L1MB1 LINE L1 -2370 3622 1300 2191 123 0 25 chr15 9473909 9474226 -76221528 - AluSx SINE Alu -3 309 1 815 130 8 0 chr15 9474235 9474358 -76221396 - AluSg/x SINE Alu -5 307 184 429 282 141 5 chr15 9474587 9474793 -76220961 - HAL1 LINE L1 -2253 254 21 1208 132 0 6 chr15 9475627 9475801 -76219953 - AluSg SINE Alu -137 173 1 1225 283 47 0 chr15 9475810 9476280 -76219474 - L1MB1 LINE L1 -4706 1185 694 404 222 17 22 chr15 9476488 9476668 -76219086 + GA-rich Low_complexity Low_complexity 2 180 0 1108 301 89 52 chr15 9476782 9477430 -76218324 - L1MB1 LINE L1 -5217 674 3 1972 131 0 10 chr15 9478118 9478409 -76217345 + AluSx SINE Alu 1 288 -24 372 22 0 0 chr15 9480264 9480309 -76215445 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 158 22 0 chr15 9480838 9480977 -76214777 + LTR25 LTR ERV1 1 142 -652 439 240 73 45 chr15 9481516 9481695 -76214059 - L3b LINE CR1 -159 1424 1241 903 202 146 38 chr15 9482848 9483061 -76212693 + MER46A DNA MER2_type 1 236 0 564 204 19 19 chr15 9484802 9484956 -76210798 + MLT1C LTR MaLR 347 467 0 257 233 50 0 chr15 9484968 9485028 -76210726 - MER5A DNA MER1_type -118 71 9 1316 265 145 38 chr15 9486774 9488696 -76207058 - L1M4 LINE L1 -844 5302 3174 336 203 13 0 chr15 9488732 9488811 -76206943 + MER116 DNA Mariner 1 80 0 5741 114 15 10 chr15 9489061 9489813 -76205941 + L1PA13 LINE L1 4637 5384 -779 903 121 0 0 chr15 9489813 9489953 -76205801 + (TA)n Simple_repeat Simple_repeat 2 141 0 5741 114 15 10 chr15 9489953 9490722 -76205032 + L1PA13 LINE L1 5384 6159 -4 348 64 0 0 chr15 9491297 9491344 -76204410 + (CA)n Simple_repeat Simple_repeat 2 48 0 410 245 37 86 chr15 9491535 9491698 -76204056 - MIR SINE MIR -31 231 77 377 388 7 0 chr15 9494332 9494484 -76201270 - MIR3 SINE MIR -37 171 19 1782 109 102 18 chr15 9494596 9494871 -76200883 + AluSx SINE Alu 1 298 -14 495 308 42 0 chr15 9494901 9495044 -76200710 + MIR SINE MIR 65 213 -49 321 155 0 0 chr15 9495668 9495726 -76200028 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr15 9496233 9496255 -76199499 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr15 9497168 9497198 -76198556 + (T)n Simple_repeat Simple_repeat 1 30 0 198 310 92 0 chr15 9497613 9497700 -76198054 - MIR SINE MIR -71 191 97 30 69 0 0 chr15 9497864 9497922 -76197832 + AT_rich Low_complexity Low_complexity 1 58 0 297 320 52 0 chr15 9498289 9498386 -76197368 + MIR3 SINE MIR 97 198 -10 378 0 0 0 chr15 9498422 9498464 -76197290 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2258 112 0 3 chr15 9498632 9498936 -76196818 + AluSq SINE Alu 1 303 -10 748 147 177 20 chr15 9500094 9500292 -76195462 - MSTA LTR MaLR -190 238 10 2328 101 3 3 chr15 9500586 9500892 -76194862 + AluSx SINE Alu 1 306 -6 2254 104 0 0 chr15 9501009 9501306 -76194448 - AluSq SINE Alu -16 297 1 409 272 22 100 chr15 9501524 9501755 -76193999 - MIR SINE MIR -12 250 30 221 277 18 54 chr15 9501801 9501913 -76193841 + L2 LINE L2 3005 3112 -201 239 54 27 0 chr15 9501978 9502015 -76193739 + (TTA)n Simple_repeat Simple_repeat 2 39 0 415 215 13 0 chr15 9502046 9502125 -76193629 + MER3 DNA MER1_type 1 80 -129 7701 18 2 2 chr15 9502144 9503375 -76192379 + L1PA3 LINE L1 4921 6151 -4 226 179 298 0 chr15 9503396 9503480 -76192274 + MER3 DNA MER1_type 101 209 0 251 237 34 17 chr15 9503480 9503539 -76192215 + L2 LINE L2 3254 3313 0 22 0 0 0 chr15 9503592 9503614 -76192140 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr15 9503796 9503820 -76191934 + (CA)n Simple_repeat Simple_repeat 1 24 0 297 0 0 0 chr15 9503889 9503922 -76191832 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 118 0 7 chr15 9504988 9505277 -76190477 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr15 9508785 9508807 -76186947 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 222 213 0 0 chr15 9508826 9508873 -76186881 + (TGG)n Simple_repeat Simple_repeat 2 48 0 241 276 35 35 chr15 9510258 9510345 -76185409 + L2 LINE L2 3137 3223 -49 511 350 40 5 chr15 9510882 9511105 -76184649 + MIR SINE MIR 22 252 -10 374 263 53 59 chr15 9511871 9512023 -76183731 + MIR SINE MIR 91 241 -21 422 320 164 34 chr15 9512196 9512881 -76182873 + L2 LINE L2 1732 2505 -809 265 243 110 37 chr15 9513109 9513245 -76182509 + L2 LINE L2 2829 2974 -298 573 283 23 12 chr15 9514407 9514580 -76181174 - MER5B DNA MER1_type -1 177 3 184 405 51 0 chr15 9516829 9516908 -76178846 - MIR SINE MIR -160 102 20 301 300 36 9 chr15 9517013 9517123 -76178631 - MIR SINE MIR -56 206 94 319 357 53 29 chr15 9517342 9517513 -76178241 + MIR3 SINE MIR 17 191 -17 2136 106 20 0 chr15 9517733 9518026 -76177728 - AluSc SINE Alu -10 299 1 21 36 0 0 chr15 9518247 9518275 -76177479 + AT_rich Low_complexity Low_complexity 1 28 0 2414 91 0 3 chr15 9519147 9519456 -76176298 + AluY SINE Alu 2 309 -2 1625 141 20 12 chr15 9520640 9520895 -76174859 + AluSx SINE Alu 35 291 -21 2049 71 0 87 chr15 9521082 9521418 -76174336 + AluY SINE Alu 1 309 0 180 0 0 0 chr15 9521418 9521438 -76174316 + (TTA)n Simple_repeat Simple_repeat 1 20 0 267 224 30 0 chr15 9521519 9521586 -76174168 + L1ME1 LINE L1 5044 5112 -1034 506 158 40 0 chr15 9521627 9521728 -76174026 + L1MA7 LINE L1 6182 6286 -5 1637 209 11 76 chr15 9521819 9522369 -76173385 + L1ME1 LINE L1 5204 5721 -445 1561 249 14 45 chr15 9522369 9522856 -76172898 + MLT2B1 LTR ERVL 1 472 -48 261 170 0 0 chr15 9522914 9522961 -76172793 + MLT2D LTR ERVL 368 414 0 1357 271 25 9 chr15 9522963 9523403 -76172351 + L1ME1 LINE L1 5719 6165 -1 242 180 148 0 chr15 9524300 9524361 -76171393 + MIR SINE MIR 95 164 -98 204 40 0 0 chr15 9524851 9524876 -76170878 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr15 9526409 9526438 -76169316 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr15 9527922 9527951 -76167803 + (T)n Simple_repeat Simple_repeat 1 29 0 195 311 22 22 chr15 9529464 9529554 -76166200 - L2 LINE L2 -505 2809 2720 272 327 83 48 chr15 9529580 9529748 -76166006 - L2 LINE L2 -701 2613 2440 205 379 133 10 chr15 9529927 9530236 -76165518 - L2 LINE L2 -961 2353 2007 2336 111 30 16 chr15 9530519 9530889 -76164865 - THE1C LTR MaLR 0 375 1 291 234 26 0 chr15 9533084 9533161 -76162593 - MER116 DNA Mariner 0 80 2 183 239 0 0 chr15 9533486 9533532 -76162222 - L2 LINE L2 0 3313 3268 420 326 26 70 chr15 9533665 9533935 -76161819 + L2 LINE L2 2577 2834 -480 189 0 0 0 chr15 9534085 9534106 -76161648 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr15 9534105 9534138 -76161616 + (CA)n Simple_repeat Simple_repeat 1 33 0 508 289 83 72 chr15 9534208 9534568 -76161186 + L2 LINE L2 2907 3270 -2 303 250 11 34 chr15 9535375 9535463 -76160291 + MIR SINE MIR 176 261 -1 453 292 35 14 chr15 9536059 9536203 -76159551 - MIR SINE MIR -109 153 7 187 219 0 24 chr15 9536481 9536522 -76159232 + MIR SINE MIR 223 262 0 231 330 22 22 chr15 9537334 9537425 -76158329 + MIR SINE MIR 34 124 -84 251 277 0 15 chr15 9537697 9537762 -76157992 + GA-rich Low_complexity Low_complexity 5 68 0 238 286 57 0 chr15 9537868 9537938 -76157816 - Charlie8 DNA MER1_type 0 2417 2344 262 355 51 7 chr15 9538303 9538441 -76157313 - MIR3 SINE MIR -9 199 56 2388 86 0 0 chr15 9540040 9540342 -76155412 + AluYa5 SINE Alu 1 302 -9 663 172 8 39 chr15 9540367 9540495 -76155259 + AluJb SINE Alu 1 124 -188 2126 147 0 0 chr15 9540873 9541172 -76154582 + AluSq SINE Alu 1 299 -14 276 113 0 56 chr15 9541411 9541482 -76154272 + (TCC)n Simple_repeat Simple_repeat 2 68 0 326 105 0 18 chr15 9541544 9541601 -76154153 + (TCC)n Simple_repeat Simple_repeat 2 57 0 283 200 0 0 chr15 9541601 9541656 -76154098 - Alu SINE Alu -11 291 237 566 304 32 16 chr15 9542444 9542697 -76153057 - Charlie8 DNA MER1_type -2128 289 33 12513 33 7 6 chr15 9542775 9545079 -76150675 + L1PA4 LINE L1 3828 6155 0 232 304 114 0 chr15 9545414 9545493 -76150261 + MIR SINE MIR 164 251 -11 5184 133 28 44 chr15 9546013 9547081 -76148673 + L1MA8 LINE L1 5237 6287 -4 1036 303 65 35 chr15 9549007 9549439 -76146315 + L2 LINE L2 2497 2941 -373 775 209 29 17 chr15 9549452 9549624 -76146130 - MIR SINE MIR 0 262 89 1054 204 20 95 chr15 9549631 9549757 -76145997 + L1ME1 LINE L1 5716 5850 -316 1977 109 19 0 chr15 9549757 9550023 -76145731 - AluSq SINE Alu -9 304 34 1054 204 20 95 chr15 9550023 9550297 -76145457 + L1ME1 LINE L1 5850 6089 -77 278 292 77 73 chr15 9550379 9551737 -76144017 + L1ME LINE L1 4060 5417 -747 357 311 42 30 chr15 9551742 9551909 -76143845 + L1ME LINE L1 5478 5646 -516 229 368 0 0 chr15 9552654 9552760 -76142994 + (TGG)n Simple_repeat Simple_repeat 3 108 0 549 268 61 53 chr15 9554793 9555021 -76140733 - MIR SINE MIR -10 252 23 676 243 112 0 chr15 9555780 9555949 -76139805 + MER5A DNA MER1_type 2 189 0 22 70 0 0 chr15 9555986 9556029 -76139725 + AT_rich Low_complexity Low_complexity 1 43 0 1246 199 68 61 chr15 9556577 9556973 -76138781 + LTR52 LTR ERVL 8 406 -15 1363 181 99 11 chr15 9557013 9557366 -76138388 + L1MC2 LINE L1 5961 6344 0 710 141 0 94 chr15 9557612 9557655 -76138099 + MLT1A1 LTR MaLR 2 47 -318 2255 109 0 0 chr15 9557655 9557957 -76137797 + AluSx SINE Alu 1 302 -10 710 141 0 94 chr15 9557957 9558062 -76137692 + MLT1A1 LTR MaLR 47 136 -229 2232 205 50 5 chr15 9558064 9558508 -76137246 + MER21B LTR ERV1 1 464 -399 4034 111 79 91 chr15 9558515 9559901 -76135853 - pTR5 LTR ERV1 0 2438 743 1228 201 19 30 chr15 9559902 9560170 -76135584 + MER21A LTR ERV1 550 814 -117 2086 107 34 0 chr15 9560238 9560529 -76135225 + AluSq SINE Alu 1 301 -12 245 288 88 12 chr15 9560558 9560638 -76135116 - L2 LINE L2 -18 3254 3169 287 243 112 86 chr15 9560787 9561055 -76134699 + MLT1I LTR MaLR 21 295 -114 797 126 144 29 chr15 9561879 9562053 -76133701 + MER2 DNA MER2_type 2 195 -150 296 308 13 0 chr15 9562079 9562157 -76133597 + MER2 DNA MER2_type 267 345 0 787 160 0 80 chr15 9562775 9562950 -76132804 + FRAM SINE Alu 4 164 -2 724 277 73 40 chr15 9563841 9564105 -76131649 + L1ME3 LINE L1 5201 5455 -707 2591 61 0 6 chr15 9564105 9564418 -76131336 - AluY SINE Alu 0 311 1 724 277 73 40 chr15 9564418 9564850 -76130904 + L1ME3 LINE L1 5455 5909 -253 327 317 114 72 chr15 9565424 9565897 -76129857 + L1M4 LINE L1 3729 4221 -1925 339 25 0 0 chr15 9565966 9566006 -76129748 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr15 9566283 9566312 -76129442 + (CA)n Simple_repeat Simple_repeat 1 29 0 484 186 167 19 chr15 9567141 9567297 -76128457 + MER53 DNA DNA 11 189 0 780 276 11 0 chr15 9567941 9568115 -76127639 - MER5B DNA MER1_type 0 178 3 279 71 0 0 chr15 9568387 9568429 -76127325 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 191 294 15 59 chr15 9568953 9569021 -76126733 - L3b LINE CR1 -2 1581 1517 2321 86 0 3 chr15 9569748 9570050 -76125704 + AluY SINE Alu 1 301 -10 574 217 20 124 chr15 9570466 9570496 -76125258 - MIR SINE MIR -34 228 196 360 244 98 18 chr15 9570496 9570660 -76125094 - MER104 DNA MER2_type 0 180 4 574 217 20 124 chr15 9570660 9570698 -76125056 - MIR SINE MIR -66 196 156 1724 61 0 22 chr15 9570698 9570926 -76124828 - L1PA7 LINE L1 -3 6151 5929 574 217 20 124 chr15 9570926 9571105 -76124649 - MIR SINE MIR -106 156 6 216 329 13 0 chr15 9571922 9572001 -76123753 - MIR SINE MIR -2 260 181 312 301 78 20 chr15 9572162 9572315 -76123439 + L1ME LINE L1 5658 5819 -302 351 203 0 14 chr15 9572384 9572458 -76123296 - Tigger5 DNA MER2_type 0 2323 2251 270 170 0 19 chr15 9572428 9572481 -76123273 - Tigger5 DNA MER2_type -2270 53 2 * 728 284 36 4 chr15 9572626 9572851 -76122903 + MIR SINE MIR 2 233 -29 2464 73 0 0 chr15 9572900 9573202 -76122552 - AluY SINE Alu -9 302 1 3379 245 106 45 chr15 9573203 9574189 -76121565 + L2 LINE L2 1364 2457 -857 1669 150 4 26 chr15 9574189 9574462 -76121292 + AluJo SINE Alu 29 295 -17 3379 245 106 45 chr15 9574462 9574839 -76120915 + L2 LINE L2 2457 2810 -504 1302 221 129 18 chr15 9574839 9575282 -76120472 - Charlie4a DNA MER1_type 0 508 17 768 266 101 59 chr15 9575343 9575627 -76120127 + L2 LINE L2 2872 3181 -132 2123 171 58 24 chr15 9575627 9576041 -76119713 + MSTC LTR MaLR 1 428 0 768 266 101 59 chr15 9576041 9576180 -76119574 + L2 LINE L2 3181 3313 0 507 289 37 74 chr15 9576416 9576658 -76119096 + MIR SINE MIR 8 240 -22 21 0 0 0 chr15 9576784 9576805 -76118949 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 9576985 9577016 -76118738 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 0 0 chr15 9577581 9577625 -76118129 - MER5A DNA MER1_type -111 78 35 992 263 76 30 chr15 9577651 9577816 -76117938 - Charlie2 DNA MER1_type 0 2862 2706 1976 135 10 16 chr15 9577816 9578127 -76117627 + AluSx SINE Alu 1 309 -3 992 263 76 30 chr15 9578127 9578486 -76117268 - Charlie2 DNA MER1_type -156 2706 2314 310 255 47 9 chr15 9578537 9578643 -76117111 - Charlie2 DNA MER1_type -2443 339 230 276 274 0 32 chr15 9578687 9578782 -76116972 - Charlie2 DNA MER1_type -2657 125 34 237 211 35 18 chr15 9578828 9578885 -76116869 + MER5A DNA MER1_type 49 106 -83 286 327 91 14 chr15 9579708 9579928 -76115826 + L2 LINE L2 2589 2825 -489 221 288 41 41 chr15 9580317 9580390 -76115364 + L2 LINE L2 3239 3311 -2 468 280 163 47 chr15 9580895 9581281 -76114473 + L1M4 LINE L1 3730 4160 -1986 1201 162 51 0 chr15 9581407 9581641 -76114113 + L1MB2 LINE L1 5308 5553 -630 652 176 94 18 chr15 9581641 9581811 -76113943 + L1MB2 LINE L1 5987 6169 -2 294 115 0 0 chr15 9581819 9581871 -76113883 + L1MB4 LINE L1 6128 6179 -1 325 254 113 11 chr15 9581891 9582068 -76113686 + L1M4 LINE L1 4215 4409 -1737 263 281 68 25 chr15 9582147 9582382 -76113372 + L1M4 LINE L1 4518 4762 -1384 361 328 16 16 chr15 9582677 9582799 -76112955 - MIR SINE MIR -139 123 2 843 211 91 15 chr15 9582881 9583080 -76112674 + Tigger5 DNA MER2_type 1 214 -2109 1961 179 36 8 chr15 9583080 9583472 -76112282 + MER57A LTR ERV1 1 403 0 2877 151 26 18 chr15 9583472 9583534 -76112220 + MER57A-int LTR ERV1 1 61 -7476 5112 208 60 83 chr15 9583534 9585330 -76110424 + MER52A LTR ERV1 1 1753 -2 2877 151 26 18 chr15 9585330 9585769 -76109985 + MER57A-int LTR ERV1 61 506 -7031 356 146 0 10 chr15 9585770 9585840 -76109914 - AluS SINE Alu -242 60 7 26 82 0 0 chr15 9585929 9585990 -76109764 + AT_rich Low_complexity Low_complexity 1 61 0 3919 141 53 9 chr15 9586061 9586977 -76108777 + MER57A-int LTR ERV1 494 1451 -4495 2144 168 38 2 chr15 9586968 9587366 -76108388 + MER57A-int LTR ERV1 2218 2629 -4908 * 1178 151 0 10 chr15 9587358 9587557 -76108197 + MER57A-int LTR ERV1 2777 2973 -4564 * 3650 133 31 69 chr15 9587557 9588449 -76107305 + MER57A-int LTR ERV1 2533 3485 -2778 2039 125 58 58 chr15 9588449 9588810 -76106944 - THE1B LTR MaLR -3 361 1 3650 133 31 69 chr15 9588810 9588983 -76106771 + MER57A-int LTR ERV1 3485 3663 -2600 531 83 0 0 chr15 9589025 9589097 -76106657 + MER57A-int LTR ERV1 7078 7149 -388 658 123 23 31 chr15 9589097 9589227 -76106527 + LTR54B LTR ERV1 3 131 -367 1245 74 157 26 chr15 9589227 9589456 -76106298 + MER57A-int LTR ERV1 7279 7537 0 2162 182 8 2 chr15 9589456 9589857 -76105897 + MER57A LTR ERV1 1 403 0 1515 135 39 0 chr15 9589859 9590119 -76105635 + Tigger5 DNA MER2_type 2054 2323 0 260 280 70 10 chr15 9590275 9590475 -76105279 + L1MC4a LINE L1 5264 5475 -2333 297 260 116 62 chr15 9590568 9590860 -76104894 + L1MC4a LINE L1 5617 5924 -1884 224 294 20 0 chr15 9591213 9591264 -76104490 + MIR SINE MIR 19 70 -138 3948 132 22 12 chr15 9591265 9591941 -76103813 + MER50 LTR ERV1 1 683 -51 308 243 54 14 chr15 9591971 9592045 -76103709 + MIR3 SINE MIR 108 184 -24 25 0 0 0 chr15 9592132 9592157 -76103597 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr15 9592417 9592443 -76103311 + (CAATT)n Simple_repeat Simple_repeat 1 26 0 2475 186 9 23 chr15 9592493 9593064 -76102690 + LTR27 LTR ERV1 3 627 -141 1653 197 6 24 chr15 9593068 9593398 -76102356 + LTR28 LTR ERV1 697 1020 0 496 246 71 58 chr15 9593398 9593622 -76102132 - MER21B LTR ERV1 -215 648 422 210 175 0 25 chr15 9593744 9593784 -76101970 + T-rich Low_complexity Low_complexity 5 43 0 838 229 18 31 chr15 9593784 9594007 -76101747 - MER21B LTR ERV1 -546 317 98 463 177 0 0 chr15 9594059 9594138 -76101616 - MER21B LTR ERV1 -773 90 12 2736 108 66 38 chr15 9594811 9595312 -76100442 + MER4B LTR ERV1 1 515 -95 304 143 26 52 chr15 9595324 9595401 -76100353 + L1ME3A LINE L1 4753 4827 -1319 23 33 0 0 chr15 9595547 9595577 -76100177 + AT_rich Low_complexity Low_complexity 1 30 0 2360 243 88 38 chr15 9595733 9596143 -76099611 + L1ME3A LINE L1 5259 5647 -523 2410 153 8 2 chr15 9596143 9596542 -76099212 - MER57A LTR ERV1 -2 401 1 2360 243 88 38 chr15 9596542 9596766 -76098988 + L1ME3A LINE L1 5647 5858 -312 1963 132 7 7 chr15 9596766 9597055 -76098699 + AluSx SINE Alu 1 289 -23 2360 243 88 38 chr15 9597055 9597280 -76098474 + L1ME3A LINE L1 5858 6162 -8 333 312 123 13 chr15 9597319 9597473 -76098281 - MIR SINE MIR -55 207 37 231 256 8 34 chr15 9597854 9597971 -76097783 + (TGG)n Simple_repeat Simple_repeat 1 114 0 3854 166 12 15 chr15 9598632 9599384 -76096370 - L1MA7 LINE L1 -4 6287 5538 266 217 58 0 chr15 9599597 9599666 -76096088 + MIR3 SINE MIR 130 202 -6 192 163 0 0 chr15 9601290 9601333 -76094421 + (TA)n Simple_repeat Simple_repeat 2 44 0 334 259 54 18 chr15 9602019 9602131 -76093623 + L1ME LINE L1 5571 5686 -435 2358 62 0 3 chr15 9602211 9602500 -76093254 + AluY SINE Alu 1 288 -23 858 287 79 24 chr15 9602989 9603483 -76092271 + LTR33 LTR ERVL 1 521 0 24 0 0 0 chr15 9605201 9605225 -76090529 + AT_rich Low_complexity Low_complexity 1 24 0 562 281 118 6 chr15 9605737 9605915 -76089839 - MIR SINE MIR -49 213 16 2442 84 3 0 chr15 9609865 9610176 -76085578 - AluSp SINE Alu -1 312 1 325 233 92 25 chr15 9610503 9610623 -76085131 - MIR SINE MIR -65 197 70 808 274 24 28 chr15 9610625 9610873 -76084881 - MIR SINE MIR -3 259 13 185 0 40 0 chr15 9611024 9611049 -76084705 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr15 9611943 9611969 -76083785 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 761 239 58 40 chr15 9612058 9612284 -76083470 - MER8 DNA MER2_type -8 231 2 2227 116 3 3 chr15 9612512 9612815 -76082939 + AluSx SINE Alu 1 303 -9 1814 168 3 3 chr15 9613604 9613902 -76081852 - AluJb SINE Alu -14 298 1 206 333 0 14 chr15 9613910 9613979 -76081775 - MIR SINE MIR -60 148 81 378 269 63 29 chr15 9614577 9614605 -76081149 + MIR SINE MIR 2 28 -234 2388 92 0 16 chr15 9614605 9614922 -76080832 + AluSx SINE Alu 1 312 0 378 269 63 29 chr15 9614922 9615068 -76080686 + MIR SINE MIR 28 182 -80 1757 146 7 27 chr15 9616911 9617206 -76078548 - AluJb SINE Alu -23 289 1 30 0 0 0 chr15 9617211 9617241 -76078513 + AT_rich Low_complexity Low_complexity 1 30 0 2626 77 0 3 chr15 9617241 9617590 -76078164 - L1PA5 LINE L1 -5 6149 5802 1989 33 24 0 chr15 9617590 9617895 -76077859 + L1P2 LINE L1 5218 5527 -628 377 286 93 28 chr15 9617987 9618169 -76077585 + MIR SINE MIR 69 262 0 2096 122 0 3 chr15 9619213 9619507 -76076247 + AluSx SINE Alu 1 293 -19 230 177 0 81 chr15 9620279 9620341 -76075413 + LTR36 LTR ERV1 139 195 -416 976 119 8 0 chr15 9620344 9620478 -76075276 + AluSq/x SINE Alu 1 135 -177 2333 94 0 0 chr15 9620478 9620777 -76074977 + AluSp SINE Alu 1 299 -14 345 271 70 34 chr15 9620777 9621154 -76074600 + LTR38B LTR ERV1 209 603 -8 487 159 44 0 chr15 9621183 9621296 -76074458 - L1MA4 LINE L1 -4 6296 6179 321 313 16 28 chr15 9621323 9621505 -76074249 + LTR67 LTR ERVL 327 506 -51 345 24 0 0 chr15 9621895 9621937 -76073817 + (TG)n Simple_repeat Simple_repeat 2 43 0 1579 137 16 4 chr15 9621937 9621977 -76073777 - AluSx SINE Alu -28 284 246 342 0 0 0 chr15 9621977 9622015 -76073739 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 137 16 4 chr15 9622015 9622223 -76073531 - AluSx SINE Alu -66 246 33 273 194 9 74 chr15 9622704 9622812 -76072942 + MER53 DNA DNA 1 101 -88 * 415 117 0 53 chr15 9622723 9622817 -76072937 - MER53 DNA DNA -10 179 91 296 198 33 77 chr15 9622997 9623088 -76072666 + MER21B LTR ERV1 3 89 -774 1494 224 170 34 chr15 9623266 9623548 -76072206 + MER21B LTR ERV1 133 375 -488 3938 138 14 5 chr15 9623548 9624177 -76071577 + MER41B LTR ERV1 1 635 0 1494 224 170 34 chr15 9624177 9624483 -76071271 + MER21B LTR ERV1 375 801 -62 780 107 38 8 chr15 9624992 9625123 -76070631 - L1PB1 LINE L1 -1 6150 6016 310 156 28 18 chr15 9625379 9625488 -76070266 + (TA)n Simple_repeat Simple_repeat 1 110 0 290 229 66 93 chr15 9625527 9625812 -76069942 + L1ME4a LINE L1 5575 5854 -318 2336 100 0 7 chr15 9625849 9626159 -76069595 + AluY SINE Alu 1 308 -3 357 243 140 0 chr15 9626236 9626372 -76069382 + L1ME4a LINE L1 5965 6119 -2 2084 125 10 6 chr15 9627146 9627457 -76068297 + AluSx SINE Alu 1 312 0 1376 61 10 10 chr15 9627483 9627680 -76068074 + L1PB1 LINE L1 5596 5792 -359 318 180 0 0 chr15 9627680 9627741 -76068013 + (TA)n Simple_repeat Simple_repeat 2 62 0 2582 90 14 0 chr15 9627741 9628106 -76067648 + L1PB1 LINE L1 5782 6151 0 21 0 0 0 chr15 9628106 9628127 -76067627 + AT_rich Low_complexity Low_complexity 1 21 0 195 302 103 26 chr15 9629236 9629352 -76066402 + L2 LINE L2 3148 3272 0 799 288 91 5 chr15 9629464 9629683 -76066071 - MIR SINE MIR -19 243 6 493 250 72 7 chr15 9629740 9629892 -76065862 - MER103 DNA DNA -2 164 3 183 196 71 36 chr15 9630716 9630772 -76064982 - MIR SINE MIR -93 169 112 282 356 60 7 chr15 9633767 9633916 -76061838 - MIR3 SINE MIR -5 203 47 448 302 22 7 chr15 9633999 9634138 -76061616 + MIR SINE MIR 17 157 -105 2151 133 7 0 chr15 9634954 9635262 -76060492 + AluSx SINE Alu 1 310 -2 1395 193 95 8 chr15 9635297 9635561 -76060193 - AluJo SINE Alu -25 287 1 22 35 0 0 chr15 9635792 9635821 -76059933 + AT_rich Low_complexity Low_complexity 1 29 0 1529 154 44 50 chr15 9636492 9636790 -76058964 - AluJb SINE Alu -16 296 1 225 146 42 0 chr15 9636823 9636871 -76058883 - L1MDb LINE L1 -5033 1376 1327 1974 131 0 33 chr15 9636900 9637206 -76058548 + AluJb SINE Alu 1 296 -16 381 229 74 56 chr15 9637207 9637502 -76058252 + L1M4 LINE L1 1539 2007 -4818 1753 216 38 24 chr15 9637540 9638087 -76057667 + L1M4 LINE L1 2878 3432 -3212 691 291 56 35 chr15 9638176 9638571 -76057183 + HAL1 LINE L1 480 882 -1625 453 269 58 51 chr15 9638617 9638874 -76056880 + LTR33 LTR ERVL 212 470 -51 1802 124 0 78 chr15 9638877 9639184 -76056570 + AluJb SINE Alu 3 285 -27 1110 306 83 10 chr15 9639267 9639771 -76055983 - ERVL LTR ERVL -2901 2863 2323 629 318 29 4 chr15 9639775 9640014 -76055740 + ERVL LTR ERVL 4754 4998 -766 401 196 81 82 chr15 9640320 9640537 -76055217 + MER58B DNA MER1_type 1 341 0 298 229 90 133 chr15 9640538 9640839 -76054915 + L1ME4a LINE L1 5590 5877 -244 1133 95 73 6 chr15 9641250 9641429 -76054325 + MER30 DNA MER1_type 2 192 -38 295 364 41 26 chr15 9641625 9641820 -76053934 + L2 LINE L2 2715 2912 -402 268 293 0 27 chr15 9642388 9642463 -76053291 + CT-rich Low_complexity Low_complexity 4 76 0 271 281 75 69 chr15 9642846 9643006 -76052748 + L2 LINE L2 3151 3311 -2 874 244 57 18 chr15 9643116 9643345 -76052409 + MIR SINE MIR 23 260 -2 289 316 75 8 chr15 9645323 9645456 -76050298 + ERVL LTR ERVL 5176 5317 -447 303 71 0 0 chr15 9646166 9646208 -76049546 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 306 166 25 chr15 9646374 9646531 -76049223 + L2 LINE L2 1930 2108 -1206 659 175 169 42 chr15 9646538 9646727 -76049027 - MER20 DNA MER1_type -6 213 1 1677 287 123 13 chr15 9646727 9647634 -76048120 + L2 LINE L2 2110 3108 -205 21 0 0 0 chr15 9649060 9649081 -76046673 + AT_rich Low_complexity Low_complexity 1 21 0 3022 98 22 2 chr15 9649288 9649735 -76046019 + L1PA14 LINE L1 5706 6161 0 246 304 14 0 chr15 9649828 9649897 -76045857 + L2 LINE L2 3203 3272 0 414 331 77 17 chr15 9649944 9650231 -76045523 + L1ME4a LINE L1 5564 5867 -254 226 239 131 8 chr15 9650279 9650409 -76045345 + L1ME4a LINE L1 5964 6109 -12 21 0 0 0 chr15 9651102 9651123 -76044631 + AT_rich Low_complexity Low_complexity 1 21 0 3098 184 79 10 chr15 9651138 9651857 -76043897 + L1MB7 LINE L1 5416 6184 0 369 275 137 47 chr15 9651967 9652178 -76043576 + L1ME4a LINE L1 5669 5898 -223 23 0 0 0 chr15 9652178 9652201 -76043553 + AT_rich Low_complexity Low_complexity 1 23 0 240 292 135 22 chr15 9654927 9655112 -76040642 - L2 LINE L2 -2 3311 3106 231 36 0 0 chr15 9655377 9655405 -76040349 + (CA)n Simple_repeat Simple_repeat 1 28 0 1425 149 103 0 chr15 9656228 9656470 -76039284 + MER57A LTR ERV1 135 401 -2 206 299 175 26 chr15 9656677 9656831 -76038923 + MIR SINE MIR 86 262 0 350 299 31 67 chr15 9659818 9660012 -76035742 - MIR SINE MIR -45 217 31 2046 125 7 13 chr15 9661428 9661733 -76034021 - AluSc SINE Alu -6 303 1 483 222 170 0 chr15 9662791 9662944 -76032810 - MIR SINE MIR -6 256 78 288 303 243 7 chr15 9662949 9663233 -76032521 + L2 LINE L2 2409 2759 -555 630 311 106 9 chr15 9663675 9664167 -76031587 - MLT1K LTR MaLR -4 584 11 341 154 0 46 chr15 9664393 9664458 -76031296 - MER5B DNA MER1_type -108 70 9 336 258 195 32 chr15 9665047 9665237 -76030517 + MIR SINE MIR 41 261 -1 1054 121 7 0 chr15 9665464 9665604 -76030150 + AluSq/x SINE Alu 5 145 -168 213 250 15 44 chr15 9666952 9667020 -76028734 - L2 LINE L2 -22 3250 3185 210 296 21 7 chr15 9667822 9667910 -76027844 + GA-rich Low_complexity Low_complexity 2 144 0 2969 132 67 89 chr15 9668436 9669047 -76026707 - LTR12 LTR ERV1 -136 578 1 357 248 165 0 chr15 9669487 9669620 -76026134 - MIR SINE MIR -81 181 27 1994 96 0 116 chr15 9669690 9670034 -76025720 - AluY SINE Alu -7 304 1 344 262 105 5 chr15 9670278 9670488 -76025266 + L1ME4a LINE L1 5639 5869 -252 25 0 0 0 chr15 9670700 9670725 -76025029 + AT_rich Low_complexity Low_complexity 1 25 0 338 316 32 25 chr15 9670755 9670924 -76024830 + MIR SINE MIR 42 210 -52 2074 106 26 23 chr15 9670950 9671252 -76024502 + AluSx SINE Alu 1 303 -9 332 275 22 51 chr15 9673141 9673279 -76022475 + MIR3 SINE MIR 6 139 -69 344 301 116 14 chr15 9673351 9673497 -76022257 + MIR3 SINE MIR 5 165 -43 1749 165 34 3 chr15 9673854 9674151 -76021603 - AluJo SINE Alu -6 306 1 2264 112 0 0 chr15 9674622 9674917 -76020837 + AluSx SINE Alu 1 295 -17 475 225 7 106 chr15 9675785 9675936 -76019818 + L2 LINE L2 3173 3308 -5 2437 88 0 0 chr15 9676709 9677017 -76018737 + AluSx SINE Alu 2 309 -3 513 319 35 26 chr15 9677751 9677977 -76017777 + MIR SINE MIR 9 236 -26 2050 108 17 3 chr15 9679217 9679514 -76016240 + AluY SINE Alu 1 301 -10 27 29 0 0 chr15 9679906 9679940 -76015814 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr15 9680096 9680139 -76015615 + (CA)n Simple_repeat Simple_repeat 2 44 0 226 294 160 112 chr15 9680432 9680701 -76015053 - L2 LINE L2 -75 3197 2916 431 274 99 62 chr15 9680751 9681313 -76014441 - L1MC/D LINE L1 -743 5403 4887 457 481 18 53 chr15 9681360 9681697 -76014057 - LTR16A LTR ERVL -5 445 121 316 289 35 14 chr15 9681755 9681897 -76013857 - LTR16A1 LTR ERVL -312 145 1 591 297 179 14 chr15 9681961 9682396 -76013358 - L3 LINE CR1 -393 1184 678 252 355 47 9 chr15 9683335 9683442 -76012312 - L2 LINE L2 0 3272 3162 2512 58 0 7 chr15 9684291 9684599 -76011155 + AluY SINE Alu 1 306 -5 910 150 0 0 chr15 9685914 9686054 -76009700 - AluSg/x SINE Alu -14 296 157 2024 115 27 3 chr15 9686837 9687132 -76008622 + AluSg SINE Alu 9 310 0 24 32 0 0 chr15 9687289 9687320 -76008434 + AT_rich Low_complexity Low_complexity 1 31 0 635 268 134 29 chr15 9688333 9688646 -76007108 + LTR33 LTR ERVL 13 358 -163 703 264 25 15 chr15 9689303 9689500 -76006254 - L1MC/D LINE L1 -1997 5811 5613 708 363 31 35 chr15 9742454 9742936 -75952818 - L3 LINE CR1 -9 1568 1089 238 264 0 0 chr15 9743155 9743208 -75952546 - LTR67 LTR ERVL -15 542 490 351 123 71 42 chr15 9746944 9747046 -75948708 + FRAM/FAM SINE Alu 26 65 -101 2089 84 44 3 chr15 9748151 9748448 -75947306 - AluSg SINE Alu -1 309 1 39 38 0 0 chr15 9748731 9748784 -75946970 + AT_rich Low_complexity Low_complexity 1 53 0 1370 133 62 8 chr15 9748790 9749031 -75946723 + MER21A LTR ERV1 11 264 -667 2456 138 45 96 chr15 9749036 9749567 -75946187 + MER21A LTR ERV1 376 879 -52 1134 135 157 26 chr15 9749741 9749971 -75945783 - AluJo SINE Alu 0 312 53 1934 132 7 0 chr15 9750019 9750343 -75945411 + AluSx SINE Alu 1 326 0 300 341 99 2 chr15 9750961 9751123 -75944631 + MIR SINE MIR 38 213 -49 1658 177 0 13 chr15 9751126 9751431 -75944323 + AluJb SINE Alu 1 301 -11 186 225 25 0 chr15 9751591 9751631 -75944123 - MIR SINE MIR -126 136 96 2386 65 0 0 chr15 9753000 9753308 -75942446 + AluY SINE Alu 1 308 -3 234 246 0 29 chr15 9753656 9753725 -75942029 + L2 LINE L2 2998 3064 -208 285 254 0 0 chr15 9754724 9754787 -75940967 + L2 LINE L2 3246 3308 -5 2501 125 71 24 chr15 9755191 9755600 -75940154 + MSTA LTR MaLR 1 428 0 1925 117 0 0 chr15 9755888 9756137 -75939617 + AluSq SINE Alu 1 249 -64 1563 197 0 3 chr15 9756261 9756561 -75939193 + AluSx SINE Alu 10 308 -4 2328 73 21 0 chr15 9757974 9758289 -75937465 + AluSq SINE Alu 1 321 0 209 301 129 0 chr15 9758549 9758642 -75937112 + L3 LINE CR1 1404 1508 -69 881 143 52 45 chr15 9759360 9759514 -75936240 - AluJb SINE Alu -18 294 140 1019 94 0 0 chr15 9759798 9759926 -75935828 + AluSg SINE Alu 6 133 -177 2267 119 0 0 chr15 9759926 9760229 -75935525 + AluSg SINE Alu 1 303 -7 942 225 38 4 chr15 9760689 9760925 -75934829 - MIR SINE MIR -1 261 18 445 233 29 0 chr15 9761111 9761214 -75934540 + MIR SINE MIR 38 143 -119 2171 123 0 10 chr15 9761423 9761724 -75934030 + AluSq SINE Alu 1 298 -15 287 237 284 21 chr15 9762284 9762474 -75933280 + MIR SINE MIR 23 262 0 490 330 82 33 chr15 9763197 9763372 -75932382 - L2 LINE L2 -607 2707 2542 1765 167 26 16 chr15 9763372 9763678 -75932076 + AluSx SINE Alu 1 309 -3 490 330 82 33 chr15 9763678 9763987 -75931767 - L2 LINE L2 -772 2542 2199 1151 257 63 6 chr15 9765651 9765982 -75929772 + LTR33 LTR ERVL 5 354 -167 1034 58 0 0 chr15 9766104 9766225 -75929529 + AluY SINE Alu 1 121 -190 2208 114 0 3 chr15 9766937 9767236 -75928518 + AluSx SINE Alu 1 298 -14 239 261 0 11 chr15 9767375 9767467 -75928287 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 1505 182 56 7 chr15 9767481 9767767 -75927987 + AluJo SINE Alu 1 300 -12 363 309 109 9 chr15 9767797 9768041 -75927713 + L2 LINE L2 2784 3055 -217 2314 85 0 3 chr15 9768093 9768386 -75927368 - AluSx SINE Alu -15 297 6 313 215 87 74 chr15 9768469 9768618 -75927136 + L2 LINE L2 3163 3313 0 206 299 0 46 chr15 9770130 9770217 -75925537 - MIR SINE MIR -110 152 70 2454 81 0 0 chr15 9772079 9772375 -75923379 - AluY SINE Alu -15 296 1 205 254 29 22 chr15 9773515 9773599 -75922155 - MIR SINE MIR -62 146 90 415 175 58 19 chr15 9774351 9774454 -75921300 - MIR SINE MIR -67 141 35 2250 91 0 24 chr15 9774916 9775212 -75920542 - AluSg SINE Alu -21 289 1 1065 106 0 0 chr15 9775519 9775660 -75920094 + AluSg/x SINE Alu 164 304 -8 645 176 14 179 chr15 9775664 9775954 -75919800 - MER33 DNA MER1_type -28 296 55 4052 225 104 49 chr15 9776017 9776573 -75919181 + L1 LINE L1 1841 2365 -3781 2547 66 0 3 chr15 9776573 9776877 -75918877 + AluY SINE Alu 1 303 -8 4052 225 104 49 chr15 9776877 9776957 -75918797 + L1 LINE L1 2365 2439 -3707 2314 113 0 3 chr15 9776957 9777259 -75918495 + AluSx SINE Alu 1 301 -11 4052 225 104 49 chr15 9777259 9777643 -75918111 + L1 LINE L1 2439 2800 -3346 2259 109 3 0 chr15 9777643 9777946 -75917808 + AluSp SINE Alu 1 304 -9 4052 225 104 49 chr15 9777946 9778034 -75917720 + L1 LINE L1 2800 2882 -3264 7457 44 3 3 chr15 9778034 9779215 -75916539 + L1PA5 LINE L1 4974 6154 0 4052 225 104 49 chr15 9779215 9779632 -75916122 + L1 LINE L1 2882 3274 -2872 2025 134 3 14 chr15 9779632 9779922 -75915832 + AluJb SINE Alu 3 289 -23 546 57 0 0 chr15 9779925 9779995 -75915759 + (GA)n Simple_repeat Simple_repeat 1 70 0 4052 225 104 49 chr15 9779995 9780126 -75915628 + L1 LINE L1 3275 3605 -2541 286 215 43 43 chr15 9781266 9781359 -75914395 - MIR SINE MIR -121 141 49 231 152 0 0 chr15 9782355 9782401 -75913353 + CT-rich Low_complexity Low_complexity 1 46 0 378 0 0 0 chr15 9782820 9782862 -75912892 + (TG)n Simple_repeat Simple_repeat 1 42 0 433 88 25 0 chr15 9782864 9782944 -75912810 + (GA)n Simple_repeat Simple_repeat 2 83 0 757 218 35 0 chr15 9788606 9788780 -75906974 + MIR SINE MIR 83 262 0 307 286 78 48 chr15 9790876 9791082 -75904672 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 9791969 9792038 -75903716 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 210 179 30 15 chr15 9792051 9792118 -75903636 + CT-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr15 9792750 9792772 -75902982 + AT_rich Low_complexity Low_complexity 1 22 0 530 203 64 119 chr15 9792820 9792850 -75902904 + MER102a DNA MER1_type 94 124 -1293 2097 133 0 3 chr15 9792850 9793144 -75902610 - AluSx SINE Alu -11 301 9 530 203 64 119 chr15 9793144 9793364 -75902390 + MER102a DNA MER1_type 124 330 0 1718 173 4 0 chr15 9793523 9793789 -75901965 - AluJb SINE Alu -44 268 2 2471 64 0 3 chr15 9794420 9794715 -75901039 + AluY SINE Alu 1 294 -17 304 189 0 0 chr15 9795023 9795076 -75900678 + MSTC LTR MaLR 79 131 -243 1653 165 146 19 chr15 9795096 9795459 -75900295 - MSTA LTR MaLR -19 409 1 733 195 102 29 chr15 9795470 9795675 -75900079 + MSTC LTR MaLR 179 398 -30 254 186 0 0 chr15 9795738 9795781 -75899973 + MSTC LTR MaLR 354 396 0 907 236 10 5 chr15 9795836 9796031 -75899723 - MER20 DNA MER1_type -2 217 22 2479 64 14 0 chr15 9797659 9797954 -75897800 + AluSp SINE Alu 1 299 -14 26 50 0 0 chr15 9798310 9798350 -75897404 + AT_rich Low_complexity Low_complexity 1 40 0 2253 114 3 13 chr15 9798366 9798681 -75897073 + AluSp SINE Alu 1 312 -1 2266 112 0 0 chr15 9798810 9799104 -75896650 + AluSx SINE Alu 1 294 -18 1434 221 89 35 chr15 9800022 9800448 -75895306 + LTR40c LTR ERVL 9 457 -8 560 262 77 27 chr15 9801411 9801632 -75894122 - LTR33 LTR ERVL -269 252 21 261 0 0 0 chr15 9801664 9801693 -75894061 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 288 127 0 0 chr15 9801723 9801778 -75893976 + (TA)n Simple_repeat Simple_repeat 1 55 0 488 158 12 12 chr15 9801828 9801910 -75893844 + LTR41 LTR ERVL 99 180 -593 2280 152 29 31 chr15 9802333 9802786 -75892968 + L1MB4 LINE L1 5715 6166 -14 229 129 0 0 chr15 9802921 9802952 -75892802 + AluSx SINE Alu 1 31 -271 7191 117 23 46 chr15 9803052 9803805 -75891949 + L1MA1 LINE L1 4044 4813 -1489 2034 148 10 3 chr15 9803805 9804110 -75891644 + AluSx SINE Alu 1 307 -5 7191 117 23 46 chr15 9804110 9804669 -75891085 + L1MA1 LINE L1 4813 5383 -919 1918 121 0 4 chr15 9804669 9804926 -75890828 + AluSx SINE Alu 35 290 -22 7191 117 23 46 chr15 9804926 9805395 -75890359 + L1MA1 LINE L1 5383 5779 -523 2220 129 0 3 chr15 9805395 9805704 -75890050 + AluSx SINE Alu 2 309 -3 7191 117 23 46 chr15 9805704 9806217 -75889537 + L1MA1 LINE L1 5779 6302 0 1827 177 44 25 chr15 9806229 9806750 -75889004 + L1MB1 LINE L1 4942 5485 -683 348 206 0 0 chr15 9806855 9806923 -75888831 - L1 LINE L1 -2740 3406 3339 * 20831 158 22 47 chr15 9806921 9808447 -75887307 - L1 LINE L1 -2131 5434 3872 498 33 0 0 chr15 9808447 9808507 -75887247 + (TG)n Simple_repeat Simple_repeat 2 61 0 20831 158 22 47 chr15 9808507 9808520 -75887234 - L1 LINE L1 -3693 3872 3860 2050 134 0 7 chr15 9808520 9808818 -75886936 - AluSx SINE Alu -16 296 1 20831 158 22 47 chr15 9808818 9810136 -75885618 - L1 LINE L1 -3705 3860 2511 186 43 0 0 chr15 9810136 9810159 -75885595 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2061 129 0 0 chr15 9810160 9810440 -75885314 - AluSx SINE Alu -32 280 1 20831 158 22 47 chr15 9810440 9813139 -75882615 - L1 LINE L1 -5053 2512 12 1440 215 4 0 chr15 9813138 9813412 -75882342 - L1 LINE L1 -1188 4958 4684 * 1601 98 0 0 chr15 9813512 9813715 -75882039 - AluSx SINE Alu -109 203 1 1779 188 10 39 chr15 9813715 9814104 -75881650 + L1MB1 LINE L1 5791 6168 -21 782 179 0 26 chr15 9814156 9814312 -75881442 + L1MA10 LINE L1 6180 6331 -3 769 151 0 32 chr15 9814493 9814619 -75881135 + AluJb SINE Alu 3 124 -188 24 32 0 0 chr15 9814619 9814650 -75881104 + AT_rich Low_complexity Low_complexity 1 31 0 3570 271 146 23 chr15 9814650 9815537 -75880217 - L2 LINE L2 -90 3223 2446 2578 43 0 3 chr15 9815537 9815841 -75879913 + AluY SINE Alu 1 303 -8 3570 271 146 23 chr15 9815841 9816701 -75879053 - L2 LINE L2 -867 2446 1275 338 260 70 0 chr15 9816704 9816804 -75878950 - MIR SINE MIR -40 222 116 642 329 99 20 chr15 9817625 9817969 -75877785 + L2 LINE L2 2943 3313 0 250 209 0 0 chr15 9817996 9818039 -75877715 + MIR SINE MIR 196 238 -24 205 301 134 92 chr15 9818683 9818716 -75877038 + L2 LINE L2 2592 2622 -692 531 232 18 9 chr15 9818716 9818828 -75876926 + MER81 DNA DNA 1 113 -1 205 301 134 92 chr15 9818828 9818966 -75876788 + L2 LINE L2 2622 2753 -561 2044 137 0 7 chr15 9818966 9819272 -75876482 - AluSx SINE Alu -8 304 1 205 301 134 92 chr15 9819272 9819458 -75876296 + L2 LINE L2 2753 2965 -349 596 259 36 106 chr15 9819757 9819918 -75875836 - L2 LINE L2 -459 2855 2719 2421 99 0 3 chr15 9819918 9820231 -75875523 - AluSq SINE Alu -1 312 1 596 259 36 106 chr15 9820231 9820343 -75875411 - L2 LINE L2 -595 2719 2601 190 361 115 8 chr15 9820883 9821005 -75874749 + L2 LINE L2 2911 3045 -227 482 320 141 2 chr15 9821064 9821270 -75874484 - MIR SINE MIR -2 260 30 516 242 83 0 chr15 9821403 9821560 -75874194 + MIR SINE MIR 80 249 -13 254 282 126 10 chr15 9821551 9821654 -75874100 - L2 LINE L2 -2 3311 3197 * 253 320 68 10 chr15 9821687 9821790 -75873964 + L2 LINE L2 3162 3270 -2 935 256 99 50 chr15 9821918 9822543 -75873211 + HAL1b LINE L1 692 1347 -1 2130 138 0 10 chr15 9822713 9823025 -75872729 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 9823610 9823631 -75872123 + AT_rich Low_complexity Low_complexity 1 21 0 2316 102 3 0 chr15 9823790 9824093 -75871661 - AluSq SINE Alu -9 304 1 2002 146 3 3 chr15 9824399 9824707 -75871047 + AluSx SINE Alu 1 308 -4 1359 213 80 0 chr15 9824718 9824840 -75870914 + AluJo SINE Alu 1 112 -200 208 0 0 59 chr15 9824840 9824874 -75870880 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1359 213 80 0 chr15 9824874 9825014 -75870740 + AluJo SINE Alu 112 284 -28 1673 188 24 30 chr15 9825034 9825369 -75870385 + L1PA16 LINE L1 5817 6149 -17 366 23 0 0 chr15 9825388 9825431 -75870323 + (TG)n Simple_repeat Simple_repeat 2 44 0 2107 127 0 0 chr15 9825431 9825715 -75870039 - AluSx SINE Alu -28 284 1 434 167 94 10 chr15 9825827 9825923 -75869831 + MER104 DNA Tc2 74 177 -3 2369 103 0 3 chr15 9825926 9826228 -75869526 - AluSx SINE Alu -11 301 1 316 339 28 0 chr15 9826240 9826349 -75869405 + MIR SINE MIR 103 214 -48 799 246 119 25 chr15 9826349 9826593 -75869161 - MLT1D LTR MaLR -190 315 49 1234 202 107 12 chr15 9826611 9826938 -75868816 + MLT1A1 LTR MaLR 1 358 -7 233 143 0 0 chr15 9827290 9827325 -75868429 - MER5B DNA MER1_type 0 178 144 711 221 0 88 chr15 9827594 9827798 -75867956 + MER51C LTR ERV1 453 638 -2 539 193 126 30 chr15 9827798 9827933 -75867821 + MER5B DNA MER1_type 28 175 -3 1968 173 40 12 chr15 9829568 9829914 -75865840 - MLT1A1 LTR MaLR 0 365 10 1778 156 10 7 chr15 9830325 9830620 -75865134 + AluSx SINE Alu 1 296 -16 259 221 73 29 chr15 9831307 9831375 -75864379 + L2 LINE L2 3234 3304 -9 2126 96 7 14 chr15 9831429 9831711 -75864043 - AluSx SINE Alu -32 280 1 290 253 273 40 chr15 9831900 9832050 -75863704 - MIR3 SINE MIR -3 205 21 934 324 116 49 chr15 9832549 9833219 -75862535 + L3 LINE CR1 739 1453 -124 1773 141 11 11 chr15 9833258 9833571 -75862183 + AluSx SINE Alu 1 313 0 438 175 0 0 chr15 9833571 9833634 -75862120 - AluJo/FLAM SINE Alu -196 116 54 * 801 180 23 0 chr15 9833630 9833758 -75861996 + AluJb SINE Alu 164 294 -18 340 129 79 99 chr15 9834225 9834326 -75861428 - LTR33 LTR ERVL 0 521 423 831 264 206 6 chr15 9834340 9834685 -75861069 + L2 LINE L2 2900 3313 0 1038 103 21 0 chr15 9835937 9836133 -75859621 - AluSg/x SINE Alu 0 331 133 388 253 55 12 chr15 9837441 9837558 -75858196 + MIR SINE MIR 5 125 -125 465 19 0 0 chr15 9837575 9837629 -75858125 + (GA)n Simple_repeat Simple_repeat 1 54 0 292 242 30 45 chr15 9837868 9838000 -75857754 + L1ME3 LINE L1 601 730 -5340 * 1208 254 72 47 chr15 9837989 9838461 -75857293 - L1ME LINE L1 -5546 524 41 486 243 185 0 chr15 9838523 9838712 -75857042 + L1ME3 LINE L1 4076 4299 -1781 868 115 0 0 chr15 9838716 9838829 -75856925 + AluJo/FLAM SINE Alu 6 118 -194 1973 107 52 42 chr15 9838829 9839138 -75856616 - AluSx SINE Alu 0 312 1 1921 239 120 55 chr15 9839144 9839348 -75856406 + L1ME3 LINE L1 4255 4444 -1652 1606 186 3 16 chr15 9839348 9839655 -75856099 - AluJo SINE Alu -9 303 1 1921 239 120 55 chr15 9839655 9841183 -75854571 + L1ME3 LINE L1 4444 6095 -1 2099 109 0 0 chr15 9841440 9841714 -75854040 + AluSq SINE Alu 1 274 -39 363 78 0 0 chr15 9841820 9841871 -75853883 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 1897 168 0 13 chr15 9841871 9842187 -75853567 - AluJb SINE Alu 0 312 1 466 348 70 61 chr15 9842382 9842839 -75852915 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 9843774 9843815 -75851939 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 9844120 9844228 -75851526 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 9844876 9845038 -75850716 + CT-rich Low_complexity Low_complexity 2 161 0 207 88 0 0 chr15 9847115 9847149 -75848605 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 302 152 221 70 chr15 9847651 9847809 -75847945 + L1MEc LINE L1 1561 1742 -4654 596 306 92 42 chr15 9848399 9848921 -75846833 + L1MEc LINE L1 2539 3086 -3129 623 236 45 28 chr15 9848924 9849102 -75846652 - MER58A DNA MER1_type -3 221 41 452 117 0 155 chr15 9849102 9849205 -75846549 + L1P LINE L1 3463 3549 -2597 447 129 24 24 chr15 9849305 9849390 -75846364 - L1 LINE L1 -1563 4583 4499 212 211 28 0 chr15 9850686 9850757 -75844997 + (TA)n Simple_repeat Simple_repeat 1 73 0 496 271 77 6 chr15 9852311 9852481 -75843273 - MLT1L LTR MaLR -40 575 394 6509 38 4 5 chr15 9852531 9853305 -75842449 - L1PA5 LINE L1 0 6154 5382 371 270 43 0 chr15 9853347 9853462 -75842292 - MLT1L LTR MaLR -350 265 146 1856 144 0 29 chr15 9853824 9854137 -75841617 - AluSx SINE Alu -8 304 1 361 351 45 0 chr15 9854359 9854493 -75841261 - MIR3 SINE MIR -39 169 30 206 302 80 107 chr15 9855057 9855431 -75840323 - L2 LINE L2 -2 3270 2907 2344 106 3 0 chr15 9855445 9855756 -75839998 - AluSq SINE Alu -1 312 1 326 229 35 135 chr15 9856784 9857005 -75838749 - MLT1F LTR MaLR -4 538 197 473 170 36 27 chr15 9857421 9857533 -75838221 - L1PB4 LINE L1 -1 6155 6043 182 36 0 36 chr15 9857539 9857567 -75838187 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2521 64 0 6 chr15 9857595 9857907 -75837847 - AluY SINE Alu -1 310 1 1744 190 98 86 chr15 9858426 9858804 -75836950 - L1MC4 LINE L1 0 8042 7653 4905 105 6 42 chr15 9858804 9859525 -75836229 + L1PA10 LINE L1 5474 6168 0 1744 190 98 86 chr15 9859525 9859684 -75836070 - L1MC4 LINE L1 -389 7653 7498 1825 105 0 0 chr15 9859687 9859926 -75835828 - AluSc SINE Alu -70 239 1 2629 111 25 8 chr15 9860225 9860593 -75835161 + THE1C LTR MaLR 1 374 -1 463 299 110 35 chr15 9860674 9860928 -75834826 + L3 LINE CR1 231 503 -1074 532 331 42 27 chr15 9861631 9861963 -75833791 + L3 LINE CR1 531 867 -710 370 303 85 69 chr15 9861993 9862382 -75833372 + L2 LINE L2 2864 3258 -14 281 293 128 37 chr15 9862784 9862948 -75832806 + L3 LINE CR1 868 1046 -531 316 313 85 45 chr15 9863049 9863225 -75832529 + MIR SINE MIR 64 246 -16 382 248 87 101 chr15 9864095 9864244 -75831510 - MIR SINE MIR -81 181 35 2091 114 0 65 chr15 9864378 9864703 -75831051 + AluSx SINE Alu 1 304 -8 642 197 14 27 chr15 9864856 9865003 -75830751 - L2 LINE L2 -2 3311 3167 259 319 0 21 chr15 9868507 9868601 -75827153 + CT-rich Low_complexity Low_complexity 1 92 0 3329 176 22 5 chr15 9869859 9869913 -75825841 + MER50 LTR ERV1 1 53 -681 464 0 18 0 chr15 9869913 9869969 -75825785 + (CA)n Simple_repeat Simple_repeat 1 57 0 3329 176 22 5 chr15 9869969 9870516 -75825238 + MER50 LTR ERV1 53 612 -122 916 51 0 58 chr15 9870522 9870659 -75825095 - AluYa5/8 SINE Alu -8 302 174 871 153 7 7 chr15 9870660 9870804 -75824950 + MER50 LTR ERV1 568 711 -23 445 293 40 20 chr15 9871063 9871213 -75824541 + MIR SINE MIR 87 239 -23 219 36 0 0 chr15 9871844 9871872 -75823882 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1667 170 33 0 chr15 9871873 9872143 -75823611 - AluJo SINE Alu -33 279 1 597 326 94 4 chr15 9872255 9872488 -75823266 + MIR SINE MIR 8 261 -1 1281 173 0 0 chr15 9872496 9872698 -75823056 - AluJo SINE Alu -26 286 85 2267 131 47 33 chr15 9872905 9873264 -75822490 - THE1B LTR MaLR 0 364 1 4434 217 76 10 chr15 9873832 9875246 -75820508 - L1MD2 LINE L1 -10 6349 4842 2143 121 0 16 chr15 9875679 9875984 -75819770 + AluSx SINE Alu 1 300 -12 1299 126 0 0 chr15 9875998 9876181 -75819573 + AluSq SINE Alu 129 311 -2 2175 119 0 6 chr15 9876230 9876595 -75819159 + AluSx SINE Alu 1 363 0 240 295 13 13 chr15 9877581 9877659 -75818095 + L1M1 LINE L1 5508 5585 -720 531 246 129 29 chr15 9877662 9878026 -75817728 + L1ME3A LINE L1 5559 5946 -216 2373 110 3 53 chr15 9878041 9878396 -75817358 - MER1B DNA MER1_type 0 337 1 557 277 218 11 chr15 9878566 9878837 -75816917 + MLT1G1 LTR MaLR 245 571 -24 2456 58 3 0 chr15 9878965 9879259 -75816495 + AluY SINE Alu 1 295 -16 307 296 12 0 chr15 9881250 9881331 -75814423 + L3b LINE CR1 1285 1366 -217 540 332 157 57 chr15 9883936 9884411 -75811343 - L3 LINE CR1 -199 1378 952 2234 75 3 37 chr15 9884411 9884705 -75811049 + AluSp SINE Alu 5 288 -25 303 49 0 0 chr15 9884707 9884748 -75811006 + (TG)n Simple_repeat Simple_repeat 2 42 0 540 332 157 57 chr15 9884748 9885025 -75810729 - L3 LINE CR1 -625 952 704 968 104 0 28 chr15 9885025 9885169 -75810585 + L1PA15 LINE L1 6023 6162 -3 540 332 157 57 chr15 9885169 9885559 -75810195 - L3 LINE CR1 -873 704 117 362 195 11 0 chr15 9887509 9887596 -75808158 + CT-rich Low_complexity Low_complexity 2 89 0 224 310 158 25 chr15 9887978 9888136 -75807618 + MIR SINE MIR 50 228 -34 198 174 0 0 chr15 9889502 9889548 -75806206 + CT-rich Low_complexity Low_complexity 1 46 0 335 269 138 62 chr15 9889577 9889737 -75806017 - MIR3 SINE MIR -21 187 16 2510 119 8 45 chr15 9890147 9890525 -75805229 - THE1B LTR MaLR 0 364 1 417 338 113 30 chr15 9890629 9891096 -75804658 + L2 LINE L2 1928 2433 -881 200 35 35 0 chr15 9891262 9891291 -75804463 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 361 280 43 109 chr15 9891486 9891665 -75804089 + MIR SINE MIR 32 197 -65 2043 123 10 3 chr15 9891665 9891967 -75803787 - AluSc SINE Alu -5 304 1 361 280 43 109 chr15 9891967 9891998 -75803756 + MIR SINE MIR 197 228 -34 1392 223 176 0 chr15 9892027 9892350 -75803404 - LTR16C LTR ERVL -12 479 100 434 267 57 51 chr15 9893212 9893301 -75802453 - MIR SINE MIR -85 177 90 2570 59 0 0 chr15 9893301 9893607 -75802147 + AluY SINE Alu 1 306 -5 434 267 57 51 chr15 9893607 9893693 -75802061 - MIR SINE MIR -172 90 1 225 0 0 0 chr15 9894161 9894186 -75801568 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2563 49 0 0 chr15 9894218 9894522 -75801232 + AluY SINE Alu 1 304 -7 621 186 79 21 chr15 9895153 9895293 -75800461 - MIR SINE MIR -21 241 94 707 278 71 39 chr15 9895303 9895558 -75800196 - MLT1E LTR MaLR -317 276 14 1290 192 73 52 chr15 9896146 9896474 -75799280 + MLT2C1 LTR ERVL 8 342 -55 203 61 30 0 chr15 9896475 9896508 -75799246 + (TG)n Simple_repeat Simple_repeat 2 35 0 330 250 0 0 chr15 9897202 9897266 -75798488 + Charlie1 DNA MER1_type 8 71 -2690 * 1429 175 75 56 chr15 9897264 9897547 -75798207 + Charlie1 DNA MER1_type 2343 2638 -123 2704 39 3 0 chr15 9897547 9897856 -75797898 - AluY SINE Alu -1 310 1 1429 175 75 56 chr15 9897856 9897983 -75797771 + Charlie1 DNA MER1_type 2638 2761 0 356 269 11 11 chr15 9898660 9898753 -75797001 + MIR SINE MIR 51 143 -119 5577 135 65 19 chr15 9899206 9900646 -75795108 - L1MA4A LINE L1 -3 6300 4796 270 81 0 0 chr15 9900957 9900994 -75794760 + (A)n Simple_repeat Simple_repeat 1 37 0 544 254 29 14 chr15 9902536 9902674 -75793080 + MIR SINE MIR 47 186 -76 414 174 0 0 chr15 9902674 9902743 -75793011 + Tigger2 DNA MER2_type 1 69 -2649 * 2838 127 25 14 chr15 9902733 9903174 -75792580 + Tigger2 DNA MER2_type 2273 2718 0 2520 119 31 3 chr15 9903244 9903598 -75792156 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr15 9904188 9904211 -75791543 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr15 9904380 9904405 -75791349 + (A)n Simple_repeat Simple_repeat 1 25 0 336 303 21 49 chr15 9904422 9904620 -75791134 + MIR SINE MIR 7 194 -68 2547 50 0 3 chr15 9905027 9905327 -75790427 + AluY SINE Alu 1 299 -12 2055 92 0 0 chr15 9905658 9905929 -75789825 + L1MA3 LINE L1 6035 6305 0 203 61 30 0 chr15 10106737 10106770 -75588984 + (CA)n Simple_repeat Simple_repeat 2 35 0 1308 191 73 52 chr15 10106771 10107101 -75588653 - MLT2C1 LTR ERVL -55 342 6 707 278 71 39 chr15 10107687 10107942 -75587812 + MLT1E LTR MaLR 14 276 -317 642 189 56 21 chr15 10107952 10108095 -75587659 + MIR SINE MIR 94 241 -21 2593 46 0 0 chr15 10108726 10109030 -75586724 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 10109062 10109087 -75586667 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 10109555 10109641 -75586113 + MIR SINE MIR 1 85 -177 2559 62 0 0 chr15 10109641 10109947 -75585807 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 10109947 10110036 -75585718 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 10110898 10111221 -75584533 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 10111250 10111281 -75584473 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 10111281 10111583 -75584171 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 10111583 10111762 -75583992 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 10111957 10111986 -75583768 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 10112152 10112619 -75583135 - L2 LINE L2 -881 2433 1928 2533 116 8 45 chr15 10112723 10113101 -75582653 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 10113511 10113671 -75582083 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 10113700 10113746 -75582008 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 10115112 10115270 -75580484 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 10115652 10115739 -75580015 + GA-rich Low_complexity Low_complexity 2 89 0 527 333 157 57 chr15 10117689 10118079 -75577675 + L3 LINE CR1 117 467 -1110 939 111 0 28 chr15 10118079 10118223 -75577531 - L1PA15 LINE L1 -3 6162 6023 527 333 157 57 chr15 10118223 10118500 -75577254 + L3 LINE CR1 467 715 -862 387 0 0 0 chr15 10118500 10118543 -75577211 + (CA)n Simple_repeat Simple_repeat 2 44 0 2219 78 3 37 chr15 10118545 10118839 -75576915 - AluSp SINE Alu -25 288 5 527 333 157 57 chr15 10118839 10119314 -75576440 + L3 LINE CR1 715 1378 -199 831 78 21 0 chr15 10120059 10120201 -75575553 + (TC)n Simple_repeat Simple_repeat 2 146 0 432 0 0 0 chr15 10120203 10120251 -75575503 + (CA)n Simple_repeat Simple_repeat 1 48 0 231 152 0 0 chr15 10120670 10120716 -75575038 + GA-rich Low_complexity Low_complexity 1 46 0 314 215 43 43 chr15 10121712 10121805 -75573949 + MIR SINE MIR 49 141 -121 182 225 25 0 chr15 10122978 10123018 -75572736 - MIR SINE MIR -126 136 96 2456 68 0 0 chr15 10124387 10124696 -75571058 + AluY SINE Alu 1 309 -2 808 218 35 0 chr15 10130389 10130563 -75565191 + MIR SINE MIR 83 262 0 219 275 23 23 chr15 10131606 10131713 -75564041 + MIR SINE MIR 86 191 -71 2302 161 61 17 chr15 10131901 10132310 -75563444 - MSTA LTR MaLR 0 428 2 356 291 78 48 chr15 10132845 10133051 -75562703 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 10133938 10134007 -75561747 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 214 91 0 91 chr15 10134020 10134064 -75561690 + (CCCCCT)n Simple_repeat Simple_repeat 1 40 0 468 51 0 0 chr15 10134064 10134123 -75561631 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1898 171 0 7 chr15 10134128 10134438 -75561316 - AluJb SINE Alu -4 308 1 466 348 70 61 chr15 10134633 10135090 -75560664 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 10136025 10136066 -75559688 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 10136371 10136479 -75559275 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 10137127 10137289 -75558465 + CT-rich Low_complexity Low_complexity 2 161 0 197 98 24 0 chr15 10139365 10139406 -75556348 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 302 152 221 70 chr15 10139902 10140060 -75555694 + L1MEc LINE L1 1561 1742 -4654 596 306 92 42 chr15 10140650 10141172 -75554582 + L1MEc LINE L1 2539 3086 -3129 623 236 45 28 chr15 10141175 10141353 -75554401 - MER58A DNA MER1_type -3 221 41 3354 139 29 27 chr15 10141353 10141914 -75553840 + L1PA12 LINE L1 3463 4024 -2122 8415 143 17 24 chr15 10142014 10144149 -75551605 + L1PA12 LINE L1 4020 6167 -1 21 0 0 0 chr15 10144154 10144175 -75551579 + AT_rich Low_complexity Low_complexity 1 21 0 325 249 140 62 chr15 10144289 10144482 -75551272 + L1MEc LINE L1 3081 3288 -2927 1935 107 52 0 chr15 10144608 10144880 -75550874 + AluSx SINE Alu 21 306 -6 528 200 0 0 chr15 10144880 10144990 -75550764 + GA-rich Low_complexity Low_complexity 1 110 0 2495 49 7 10 chr15 10145213 10145521 -75550233 + AluY SINE Alu 1 307 -4 693 266 49 84 chr15 10145522 10146119 -75549635 + L1MEc LINE L1 3296 3871 -2344 587 234 111 19 chr15 10146106 10146324 -75549430 + L1P3 LINE L1 5545 5791 -363 * 355 181 296 82 chr15 10146345 10146373 -75549381 - MER4C LTR ERV1 -18 447 426 2512 68 0 3 chr15 10146373 10146683 -75549071 - AluY SINE Alu -2 309 1 355 181 296 82 chr15 10146683 10146897 -75548857 - MER4C LTR ERV1 -39 426 153 * 1352 139 133 51 chr15 10146867 10147183 -75548571 - MER4A LTR ERV1 -322 342 1 279 241 161 43 chr15 10147187 10147349 -75548405 + L1ME3A LINE L1 5782 5962 -208 419 300 58 90 chr15 10147742 10148046 -75547708 - L2 LINE L2 -601 2713 2424 2657 30 0 0 chr15 10148046 10148343 -75547411 + AluY SINE Alu 1 297 -14 419 300 58 90 chr15 10148343 10148448 -75547306 - L2 LINE L2 -890 2424 2317 293 244 57 148 chr15 10148858 10148877 -75546877 + MIR3 SINE MIR 35 54 -154 2192 133 52 42 chr15 10148877 10149262 -75546492 - MLT1B LTR MaLR -1 389 1 293 244 57 148 chr15 10149262 10149374 -75546380 + MIR3 SINE MIR 54 175 -33 641 164 158 64 chr15 10149374 10149477 -75546277 - MER5A DNA MER1_type -2 187 95 2205 123 0 0 chr15 10149477 10149777 -75545977 - AluSx SINE Alu -12 300 1 641 164 158 64 chr15 10149777 10149814 -75545940 - MER5A DNA MER1_type -94 95 63 198 0 0 0 chr15 10149814 10149836 -75545918 + (CTG)n Simple_repeat Simple_repeat 2 23 0 641 164 158 64 chr15 10149836 10149865 -75545889 - MER5A DNA MER1_type -126 63 1 293 244 57 148 chr15 10149865 10149908 -75545846 + MIR3 SINE MIR 175 194 -14 879 203 19 57 chr15 10149937 10150149 -75545605 - MER105 DNA DNA 0 204 1 394 294 49 60 chr15 10150291 10150475 -75545279 - MIR3 SINE MIR -15 193 12 28 0 0 0 chr15 10151752 10151780 -75543974 + AT_rich Low_complexity Low_complexity 1 28 0 181 298 0 0 chr15 10153259 10153316 -75542438 + L3 LINE CR1 782 838 -739 437 292 22 36 chr15 10153388 10153525 -75542229 - MIR SINE MIR -55 153 19 267 204 0 0 chr15 10153658 10153707 -75542047 - L2 LINE L2 0 3313 3265 606 153 0 0 chr15 10153800 10153885 -75541869 - AluJb SINE Alu -26 286 202 704 161 0 9 chr15 10155300 10155412 -75540342 + AluJo SINE Alu 42 152 -160 10436 172 36 21 chr15 10155424 10155889 -75539865 - L1MC3 LINE L1 -394 7391 6934 2250 45 4 4 chr15 10155889 10156156 -75539598 - AluY SINE Alu -16 295 29 10436 172 36 21 chr15 10156156 10156904 -75538850 - L1MC3 LINE L1 -851 6934 6198 2263 107 3 3 chr15 10156904 10157214 -75538540 - AluSq SINE Alu -3 310 1 10436 172 36 21 chr15 10157214 10158048 -75537706 - L1MC3 LINE L1 -1587 6198 5313 2593 26 0 0 chr15 10158032 10158335 -75537419 - L1PA3 LINE L1 0 6155 5853 * 5290 24 15 0 chr15 10158034 10158619 -75537135 - L1PA3 LINE L1 0 6155 5562 16376 29 2 0 chr15 10158619 10160548 -75535206 + L1P LINE L1 2409 4341 -1805 535 163 69 124 chr15 10160539 10160772 -75534982 - L1M4 LINE L1 -779 5367 5148 * 652 338 26 30 chr15 10161654 10161956 -75533798 - L2 LINE L2 -526 2788 2488 395 206 163 0 chr15 10161970 10162062 -75533692 - MER81 DNA DNA -7 107 1 2288 93 7 3 chr15 10163339 10163639 -75532115 + AluSq SINE Alu 1 301 -12 371 306 32 0 chr15 10163854 10163978 -75531776 - MIR SINE MIR -80 182 55 202 260 122 41 chr15 10164443 10164566 -75531188 - L2 LINE L2 -994 2320 2188 291 370 44 6 chr15 10164572 10164753 -75531001 + MIR SINE MIR 8 195 -67 277 259 35 0 chr15 10165011 10165096 -75530658 + MIR SINE MIR 105 192 -70 502 45 15 0 chr15 10166070 10166136 -75529618 + MER41B LTR ERV1 481 547 -88 350 272 197 19 chr15 10166511 10166669 -75529085 + MIR SINE MIR 1 187 -62 215 111 0 28 chr15 10167305 10167341 -75528413 - MIR SINE MIR -19 243 209 1056 266 80 77 chr15 10167478 10168031 -75527723 + L2 LINE L2 2520 3070 -243 378 0 0 0 chr15 10168031 10168073 -75527681 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2294 57 0 11 chr15 10168075 10168358 -75527396 - AluY SINE Alu -31 280 1 1056 266 80 77 chr15 10168358 10168573 -75527181 + L2 LINE L2 3070 3291 -22 1860 234 82 26 chr15 10168583 10169084 -75526670 - L1ME1 LINE L1 -9 6157 5629 334 325 26 0 chr15 10169105 10169219 -75526535 - MIR SINE MIR -121 141 25 504 326 22 11 chr15 10170176 10170357 -75525397 - MER5A DNA MER1_type 0 189 7 498 243 0 0 chr15 10170736 10170839 -75524915 + MIR SINE MIR 159 261 -1 270 73 0 0 chr15 10170851 10170892 -75524862 + (CAG)n Simple_repeat Simple_repeat 1 41 0 730 162 92 7 chr15 10172186 10172328 -75523426 + MER3 DNA MER1_type 15 168 -41 1883 136 71 8 chr15 10172331 10172699 -75523055 + MER3 DNA MER1_type 2234 2624 0 202 416 32 39 chr15 10173711 10173990 -75521764 + L3 LINE CR1 35 311 -1266 1115 216 25 72 chr15 10174014 10174333 -75521421 + L1MA10 LINE L1 6030 6333 -1 214 375 12 0 chr15 10174413 10174493 -75521261 + L3 LINE CR1 438 518 -1059 222 317 133 0 chr15 10174529 10174649 -75521105 + L2 LINE L2 3178 3313 0 904 301 95 6 chr15 10174725 10175074 -75520680 + L3 LINE CR1 618 997 -580 290 271 129 41 chr15 10175237 10175407 -75520347 + L3 LINE CR1 1291 1475 -102 186 352 23 11 chr15 10176261 10176349 -75519405 - MIR3 SINE MIR -31 177 89 225 0 0 0 chr15 10176776 10176801 -75518953 + (T)n Simple_repeat Simple_repeat 1 25 0 497 256 205 5 chr15 10177493 10177688 -75518066 - MIR SINE MIR -28 234 1 329 138 23 35 chr15 10178009 10178096 -75517658 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 182 223 107 116 chr15 10178322 10178434 -75517320 + L2 LINE L2 3145 3255 -17 449 266 8 31 chr15 10179352 10179480 -75516274 + L2 LINE L2 3189 3313 0 298 274 95 36 chr15 10179537 10179705 -75516049 - MIR SINE MIR -50 212 35 199 292 50 83 chr15 10179908 10180028 -75515726 - L2 LINE L2 -12 3260 3145 1911 132 3 34 chr15 10180643 10180796 -75514958 - AluSx SINE Alu -26 286 145 2419 72 7 3 chr15 10180796 10181102 -75514652 - AluY SINE Alu -4 307 1 1911 132 3 34 chr15 10181102 10181243 -75514511 - AluSx SINE Alu -167 145 1 344 331 63 7 chr15 10181780 10181922 -75513832 + MIR SINE MIR 71 220 -42 607 325 49 16 chr15 10183537 10183780 -75511974 + MIR SINE MIR 12 262 0 2184 194 28 41 chr15 10184156 10184274 -75511480 - L1ME2 LINE L1 -9 6155 6037 2468 58 0 0 chr15 10184274 10184566 -75511188 + AluY SINE Alu 1 292 -19 2184 194 28 41 chr15 10184566 10184956 -75510798 - L1ME2 LINE L1 -127 6037 5654 444 252 128 14 chr15 10184957 10185189 -75510565 - LTR16A1 LTR ERVL -193 257 1 1312 206 31 17 chr15 10185194 10185486 -75510268 - L1ME2 LINE L1 -1071 5075 4780 838 257 156 15 chr15 10185658 10185997 -75509757 - MLT1J2 LTR MaLR 0 450 64 628 226 27 54 chr15 10186071 10186257 -75509497 + MIR SINE MIR 5 185 -77 1767 142 45 24 chr15 10186284 10186573 -75509181 - AluJb SINE Alu -17 295 1 257 322 11 11 chr15 10186573 10186663 -75509091 + MIR SINE MIR 173 262 0 1858 180 0 3 chr15 10187173 10187468 -75508286 + AluJo SINE Alu 1 294 -18 2367 203 23 41 chr15 10188087 10188129 -75507625 - MLT2B3 LTR ERVL -7 547 506 222 37 0 0 chr15 10188129 10188156 -75507598 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chr15 10188155 10188180 -75507574 + (TC)n Simple_repeat Simple_repeat 2 26 0 2367 203 23 41 chr15 10188156 10188179 -75507575 - MLT2B3 LTR ERVL -48 506 484 189 0 0 0 chr15 10188179 10188200 -75507554 + (TA)n Simple_repeat Simple_repeat 1 21 0 2367 203 23 41 chr15 10188200 10188714 -75507040 - MLT2B3 LTR ERVL -70 484 1 205 233 105 58 chr15 10189468 10189554 -75506200 + L2 LINE L2 2583 2672 -642 377 325 63 0 chr15 10189697 10189823 -75505931 - MIR3 SINE MIR -10 198 65 * 394 238 162 0 chr15 10189822 10189927 -75505827 + L2 LINE L2 3188 3309 -4 2231 114 7 0 chr15 10190811 10191109 -75504645 - AluSx SINE Alu -8 304 5 225 283 0 0 chr15 10191142 10191202 -75504552 + L1MC/D LINE L1 5809 5868 -1940 1054 164 11 6 chr15 10192048 10192225 -75503529 - L1PA16 LINE L1 -16 6150 5973 2265 123 6 0 chr15 10192225 10192550 -75503204 + L1PA16 LINE L1 5614 5940 -226 23 0 0 0 chr15 10192922 10192945 -75502809 + AT_rich Low_complexity Low_complexity 1 23 0 198 60 120 0 chr15 10192945 10192995 -75502759 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 46 0 0 0 chr15 10192995 10193041 -75502713 + AT_rich Low_complexity Low_complexity 1 46 0 1355 158 22 29 chr15 10193041 10193093 -75502661 - L1MA8 LINE L1 -23 6268 6217 189 0 0 0 chr15 10193093 10193114 -75502640 + (CA)n Simple_repeat Simple_repeat 1 21 0 1355 158 22 29 chr15 10193114 10193339 -75502415 - L1MA8 LINE L1 -74 6217 5993 1964 156 0 6 chr15 10194171 10194497 -75501257 - AluJo SINE Alu 0 324 1 3965 153 31 15 chr15 10195045 10195335 -75500419 - L1MB2 LINE L1 -39 6132 5848 2538 70 0 6 chr15 10195335 10195647 -75500107 - AluY SINE Alu 0 311 2 3965 153 31 15 chr15 10195647 10196031 -75499723 - L1MB2 LINE L1 -323 5848 5447 992 259 162 56 chr15 10196036 10196802 -75498952 + HAL1 LINE L1 802 1648 -859 278 291 7 74 chr15 10197241 10197389 -75498365 + HAL1b LINE L1 750 887 -461 2748 32 48 0 chr15 10197413 10197728 -75498026 + L1PA4 LINE L1 5822 6151 -4 434 264 54 62 chr15 10197795 10198037 -75497717 + HAL1 LINE L1 2267 2506 -1 194 0 0 37 chr15 10198758 10198785 -75496969 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1910 229 60 36 chr15 10199042 10199591 -75496163 + MER68 LTR ERV1 1 562 0 2425 74 3 0 chr15 10199837 10200134 -75495620 + AluY SINE Alu 1 298 -13 611 332 131 13 chr15 10200308 10200697 -75495057 + L2 LINE L2 2859 3293 -20 1356 282 55 9 chr15 10200832 10201272 -75494482 - LTR16C LTR ERVL -29 462 3 602 314 67 9 chr15 10202333 10202556 -75493198 - MIR SINE MIR -6 256 21 381 184 9 64 chr15 10203414 10203543 -75492211 - MER5B DNA MER1_type -34 144 42 562 196 0 0 chr15 10204296 10204388 -75491366 + MER2 DNA MER2_type 8 99 -246 341 217 0 0 chr15 10204388 10204448 -75491306 - MER2 DNA MER2_type -1 344 285 230 154 26 0 chr15 10204440 10204479 -75491275 - MER8 DNA MER2_type -97 142 103 * 444 192 13 0 chr15 10205052 10205130 -75490624 + MADE1 DNA Mariner 2 80 0 348 311 0 0 chr15 10205145 10205248 -75490506 - Charlie8 DNA MER1_type -2127 290 188 4940 223 23 31 chr15 10205567 10206498 -75489256 - MER49 LTR ERV1 0 923 1 220 313 176 38 chr15 10207557 10207688 -75488066 + MIR SINE MIR 1 149 -113 2077 106 3 7 chr15 10207846 10208139 -75487615 + AluSg SINE Alu 1 292 -18 186 133 0 0 chr15 10208315 10208345 -75487409 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 798 226 62 54 chr15 10208395 10208697 -75487057 - L1ME3A LINE L1 -28 6142 5837 544 228 63 8 chr15 10208698 10208825 -75486929 - MER94 DNA DNA 0 134 1 23 0 0 0 chr15 10209788 10209811 -75485943 + AT_rich Low_complexity Low_complexity 1 23 0 402 210 160 8 chr15 10210296 10210415 -75485339 + L1ME4a LINE L1 5944 6080 -41 367 321 80 12 chr15 10212734 10212896 -75482858 - MIR SINE MIR -70 192 20 456 298 73 7 chr15 10213356 10213507 -75482247 + MIR SINE MIR 20 180 -82 1061 310 35 32 chr15 10214100 10214564 -75481190 - MLT1K LTR MaLR 0 588 124 354 259 256 39 chr15 10215211 10215327 -75480427 - L2 LINE L2 -9 3304 3214 1430 188 25 121 chr15 10215327 10215731 -75480023 - MLT1A1 LTR MaLR 0 365 1 354 259 256 39 chr15 10215731 10216036 -75479718 - L2 LINE L2 -99 3214 2740 361 173 39 19 chr15 10216402 10216456 -75479298 + MER53 DNA DNA 1 52 -137 4553 128 42 4 chr15 10216456 10217172 -75478582 - L1PA16 LINE L1 0 6166 5424 361 173 39 19 chr15 10217172 10217221 -75478533 + MER53 DNA DNA 52 106 -83 620 79 0 0 chr15 10217646 10217722 -75478032 - L1PA3 LINE L1 -19 6136 6061 188 67 33 0 chr15 10217726 10217756 -75477998 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 805 207 171 56 chr15 10217848 10218152 -75477602 - L1MEc LINE L1 -6014 382 44 2534 119 28 0 chr15 10219196 10219550 -75476204 - THE1B LTR MaLR 0 364 1 2150 64 50 3 chr15 10222595 10222877 -75472877 - AluY SINE Alu -16 295 1 1536 159 49 19 chr15 10222997 10223305 -75472449 + MER33 DNA MER1_type 6 322 -2 22 0 0 0 chr15 10223484 10223506 -75472248 + AT_rich Low_complexity Low_complexity 1 22 0 8859 171 27 11 chr15 10223707 10226355 -75469399 - L1PA16 LINE L1 -22 6144 3472 259 269 172 18 chr15 10228254 10228421 -75467333 - MIR SINE MIR -50 212 21 249 281 16 0 chr15 10228651 10228715 -75467039 - L2 LINE L2 -3 3269 3205 430 339 108 14 chr15 10229085 10229371 -75466383 - L2 LINE L2 -644 2670 2358 218 300 77 39 chr15 10230474 10230604 -75465150 - L2 LINE L2 -449 2865 2731 3893 166 41 26 chr15 10230750 10231480 -75464274 - L1MB4 LINE L1 -12 6168 5428 731 271 84 0 chr15 10231882 10232096 -75463658 + MIR SINE MIR 2 233 -29 647 190 124 0 chr15 10232591 10232712 -75463042 + FLAM_A SINE Alu 1 136 -6 2566 46 0 3 chr15 10233397 10233699 -75462055 - AluY SINE Alu -8 303 3 282 271 171 0 chr15 10234329 10234469 -75461285 - MIR SINE MIR -58 204 41 1601 204 33 46 chr15 10234481 10234849 -75460905 - MLT1A1 LTR MaLR -2 363 1 632 210 118 0 chr15 10235087 10235206 -75460548 + FLAM_A SINE Alu 1 133 0 4885 156 23 10 chr15 10237885 10238655 -75457099 - LTR39 LTR ERV1 0 783 4 299 267 98 0 chr15 10238810 10238912 -75456842 + L1ME LINE L1 5484 5594 -527 1503 180 0 11 chr15 10239240 10239501 -75456253 + AluJb SINE Alu 1 258 -54 225 94 0 0 chr15 10240347 10240379 -75455375 + (T)n Simple_repeat Simple_repeat 1 32 0 1108 139 42 0 chr15 10240385 10240428 -75455326 - AluSg SINE Alu -137 173 133 261 0 0 0 chr15 10240428 10240457 -75455297 + (TG)n Simple_repeat Simple_repeat 2 30 0 1108 139 42 0 chr15 10240457 10240579 -75455175 - AluSg SINE Alu -177 133 1 980 89 0 57 chr15 10242559 10242575 -75453179 - L1PA13 LINE L1 0 6163 6148 2417 72 0 10 chr15 10242575 10242879 -75452875 - AluY SINE Alu -10 301 1 980 89 0 57 chr15 10242879 10243019 -75452735 - L1PA13 LINE L1 -15 6148 6016 267 274 109 50 chr15 10243040 10243338 -75452416 - L1PA8A LINE L1 -241 5929 5608 1584 98 288 176 chr15 10243342 10243881 -75451873 - LTR12 LTR ERV1 -115 599 1 399 262 136 43 chr15 10243991 10244258 -75451496 - L1MC/D LINE L1 -747 5399 5158 2197 112 0 16 chr15 10244258 10244563 -75451191 - AluSg SINE Alu -10 300 1 399 262 136 43 chr15 10244563 10244820 -75450934 - L1MC/D LINE L1 -988 5158 4889 351 0 0 0 chr15 10244877 10244916 -75450838 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 272 119 53 chr15 10244928 10245171 -75450583 - MLT1J LTR MaLR -22 489 231 1302 180 44 0 chr15 10245494 10245744 -75450010 - AluJo SINE Alu -14 298 38 1548 138 55 75 chr15 10245870 10246217 -75449537 - L1MA7 LINE L1 -85 6206 5867 523 205 59 96 chr15 10246277 10246516 -75449238 - L1MC/D LINE L1 -1440 4706 4477 321 280 127 21 chr15 10246846 10247035 -75448719 - L1MC/D LINE L1 -1744 4402 4194 420 319 27 16 chr15 10247402 10247590 -75448164 + MIR SINE MIR 69 258 -4 1862 171 3 0 chr15 10247765 10248052 -75447702 + AluJb SINE Alu 1 288 -24 1048 196 52 0 chr15 10248187 10248381 -75447373 + MER20 DNA MER1_type 1 204 -15 545 320 30 39 chr15 10249131 10249362 -75446392 - MIR SINE MIR -21 241 13 2088 128 3 3 chr15 10250736 10251034 -75444720 + AluSx SINE Alu 1 298 -14 1144 329 100 35 chr15 10252197 10252568 -75443186 - L2 LINE L2 -17 3296 2950 928 9 38 0 chr15 10252568 10252674 -75443080 + L1PA4 LINE L1 6046 6155 0 1144 329 100 35 chr15 10252674 10253226 -75442528 - L2 LINE L2 -363 2950 2305 450 0 0 0 chr15 10253424 10253474 -75442280 + (CA)n Simple_repeat Simple_repeat 2 51 0 2564 114 29 16 chr15 10254131 10254516 -75441238 - MLT1B LTR MaLR 0 390 1 758 184 149 6 chr15 10255384 10255558 -75440196 - MER3 DNA MER1_type -6 203 5 248 188 14 72 chr15 10255665 10255734 -75440020 - MIR SINE MIR -140 122 58 21 36 0 0 chr15 10255734 10255762 -75439992 + AT_rich Low_complexity Low_complexity 1 28 0 1043 269 121 33 chr15 10256800 10257286 -75438468 - MLT1F LTR MaLR -3 539 11 216 0 0 0 chr15 10257847 10257871 -75437883 + (A)n Simple_repeat Simple_repeat 1 24 0 370 324 170 16 chr15 10258802 10258984 -75436770 + MIR SINE MIR 47 256 -6 229 354 131 0 chr15 10259561 10259691 -75436063 - MIR SINE MIR -75 187 41 802 301 37 8 chr15 10260326 10260572 -75435182 - MIR SINE MIR -8 254 2 538 333 184 31 chr15 10262228 10263411 -75432343 - L2 LINE L2 -2 3270 1877 470 353 46 9 chr15 10263822 10264040 -75431714 - L3b LINE CR1 -160 1423 1198 3455 148 73 5 chr15 10265028 10265628 -75430126 + L1MA6 LINE L1 5660 6300 0 2132 122 114 150 chr15 10265798 10266332 -75429422 + MLT2B2 LTR ERVL 1 515 0 259 269 55 76 chr15 10266824 10266969 -75428785 + MER5B DNA MER1_type 35 176 -2 218 314 29 0 chr15 10268337 10268407 -75427347 + L2 LINE L2 3201 3272 0 262 279 100 57 chr15 10268424 10268564 -75427190 + MIR SINE MIR 80 225 -37 2706 33 0 0 chr15 10268700 10269003 -75426751 - AluY SINE Alu -8 303 1 275 344 43 31 chr15 10269532 10269695 -75426059 + L2 LINE L2 3043 3207 -65 1817 107 75 21 chr15 10270656 10270936 -75424818 + AluJb SINE Alu 1 295 -17 952 301 115 25 chr15 10271770 10272206 -75423548 - L2 LINE L2 -2 3311 2837 249 128 0 0 chr15 10272216 10272263 -75423491 + LTR66 LTR ERVL 393 439 -171 240 191 36 0 chr15 10272265 10272349 -75423405 + (TA)n Simple_repeat Simple_repeat 1 87 0 3363 166 32 44 chr15 10272382 10273275 -75422479 - L1MA9 LINE L1 -37 6283 5454 2092 255 77 71 chr15 10273305 10274139 -75421615 - L2 LINE L2 -507 2807 1969 196 268 18 71 chr15 10274345 10274457 -75421297 + MIR SINE MIR 83 188 -74 245 317 114 24 chr15 10274558 10274681 -75421073 - L2 LINE L2 -1 3312 3179 746 256 101 9 chr15 10275816 10276043 -75419711 + MIR SINE MIR 15 262 0 183 280 242 15 chr15 10276048 10276180 -75419574 + MIR SINE MIR 101 262 0 714 250 95 0 chr15 10276619 10276819 -75418935 + MIR SINE MIR 41 259 -3 284 193 0 5 chr15 10281949 10282003 -75413751 - MLT2C1 LTR ERVL 0 397 351 246 220 0 0 chr15 10282003 10282062 -75413692 + (TGGG)n Simple_repeat Simple_repeat 4 62 0 1722 210 26 6 chr15 10282063 10282416 -75413338 - MLT2C1 LTR ERVL -37 427 1 212 31 62 0 chr15 10282802 10282834 -75412920 + T-rich Low_complexity Low_complexity 2 35 0 254 296 136 30 chr15 10282840 10282972 -75412782 + MIR3 SINE MIR 1 146 -62 2202 124 67 6 chr15 10283073 10283388 -75412366 - MER1B DNA MER1_type 0 337 4 793 236 100 22 chr15 10283388 10283617 -75412137 + MIR SINE MIR 15 261 -1 233 288 85 8 chr15 10283626 10283744 -75412010 + MIR SINE MIR 91 217 -45 2648 51 0 0 chr15 10285355 10285666 -75410088 + AluY SINE Alu 1 311 0 203 306 109 48 chr15 10287264 10287411 -75408343 - MIR SINE MIR -10 252 97 820 244 65 30 chr15 10287944 10288174 -75407580 + MIR SINE MIR 4 241 -21 187 267 0 0 chr15 10288200 10288245 -75407509 + L2 LINE L2 3217 3261 -11 2413 261 74 51 chr15 10288430 10289240 -75406514 - L1MEc LINE L1 -3319 2896 2105 2256 102 0 13 chr15 10289240 10289543 -75406211 - AluSx SINE Alu -13 299 1 2413 261 74 51 chr15 10289543 10290163 -75405591 - L1MEc LINE L1 -4110 2105 1500 1973 127 3 0 chr15 10290163 10290480 -75405274 - AluSq SINE Alu 0 318 1 2413 261 74 51 chr15 10290480 10291239 -75404515 - L1MEc LINE L1 -4715 1500 707 393 301 8 15 chr15 10291751 10291884 -75403870 - L1MEc LINE L1 -5933 272 141 726 311 223 31 chr15 10292427 10293896 -75401858 - L2 LINE L2 -841 2473 724 1286 209 149 30 chr15 10293919 10294316 -75401438 - MLT1C LTR MaLR -9 458 15 1938 150 0 7 chr15 10294677 10294977 -75400777 + AluSx SINE Alu 1 298 -14 2061 99 7 7 chr15 10296335 10296640 -75399114 + AluSc SINE Alu 1 305 0 253 307 129 0 chr15 10296793 10296894 -75398860 + MIR SINE MIR 37 150 -58 4928 119 21 6 chr15 10296974 10297687 -75398067 - L1PA14 LINE L1 -2 6159 5436 227 339 55 28 chr15 10298198 10298307 -75397447 + L3b LINE CR1 1457 1568 -15 191 294 24 71 chr15 10298772 10298857 -75396897 - MER5A DNA MER1_type -102 87 7 663 240 0 0 chr15 10301565 10301686 -75394068 + FLAM_A SINE Alu 1 121 -12 246 105 0 0 chr15 10301686 10301724 -75394030 + (ATG)n Simple_repeat Simple_repeat 2 39 0 359 301 62 7 chr15 10303152 10303298 -75392456 + MIR SINE MIR 77 230 -32 193 133 89 0 chr15 10304441 10304486 -75391268 - L2 LINE L2 -2 3311 3263 385 352 26 16 chr15 10305143 10305336 -75390418 + L2 LINE L2 2468 2662 -652 5948 129 56 28 chr15 10305344 10306742 -75389012 - L1MA5 LINE L1 -5 6295 4850 196 248 0 48 chr15 10306936 10307081 -75388673 + CT-rich Low_complexity Low_complexity 2 139 0 560 328 55 30 chr15 10307357 10307592 -75388162 - MIR SINE MIR -11 251 11 208 337 81 23 chr15 10307852 10307938 -75387816 - L2 LINE L2 -48 3224 3134 1081 215 87 4 chr15 10310484 10310726 -75385028 + MIR SINE MIR 1 262 0 730 322 54 56 chr15 10312087 10312834 -75382920 + L2 LINE L2 2437 3182 -90 2381 75 0 3 chr15 10313261 10313555 -75382199 - AluY SINE Alu -18 293 1 357 206 134 21 chr15 10315538 10315635 -75380119 + MIR SINE MIR 85 192 -70 30 59 0 0 chr15 10315954 10316005 -75379749 + AT_rich Low_complexity Low_complexity 1 51 0 2295 71 0 4 chr15 10316131 10316432 -75379322 + AluY SINE Alu 1 300 0 190 318 112 9 chr15 10317921 10318028 -75377726 + MIR3 SINE MIR 69 186 -22 26 0 0 0 chr15 10318285 10318311 -75377443 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 10318410 10318433 -75377321 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr15 10319031 10319053 -75376701 + (A)n Simple_repeat Simple_repeat 1 22 0 2714 23 0 7 chr15 10319472 10319779 -75375975 - AluY SINE Alu -6 305 1 2458 58 0 10 chr15 10322421 10322716 -75373038 + AluY SINE Alu 1 292 -19 298 212 47 12 chr15 10322736 10322821 -75372933 - L1MA4 LINE L1 -5 6295 6208 1920 143 27 0 chr15 10324043 10324337 -75371417 - AluSx SINE Alu -10 302 1 2115 135 0 10 chr15 10324684 10324995 -75370759 - AluSg SINE Alu -2 308 1 309 284 61 20 chr15 10325326 10325474 -75370280 - L1MC4 LINE L1 -1124 6918 6765 281 257 115 158 chr15 10327224 10327407 -75368347 + MER5B DNA MER1_type 3 177 -1 2051 125 0 30 chr15 10329674 10329979 -75365775 + AluSx SINE Alu 1 296 -16 3673 89 105 0 chr15 10330727 10331253 -75364501 + LTR12 LTR ERV1 1 581 -133 251 316 90 57 chr15 10331985 10332317 -75363437 - L1ME LINE L1 -224 5897 5555 274 293 92 18 chr15 10332388 10332552 -75363202 - L1ME LINE L1 -2337 5471 5296 24 32 0 0 chr15 10332773 10332804 -75362950 + AT_rich Low_complexity Low_complexity 1 31 0 286 256 64 39 chr15 10333097 10333300 -75362454 - L1ME LINE L1 -1481 4665 4458 261 309 81 22 chr15 10334255 10334391 -75361363 + MIR SINE MIR 20 163 -99 987 284 179 20 chr15 10334397 10334837 -75360917 - L2 LINE L2 0 3313 2804 566 231 46 67 chr15 10334848 10334974 -75360780 + MER58C DNA MER1_type 10 137 -2283 189 0 0 0 chr15 10334974 10334995 -75360759 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2069 119 3 23 chr15 10335001 10335304 -75360450 + AluSx SINE Alu 1 297 -15 566 231 46 67 chr15 10335304 10335365 -75360389 + MER58C DNA MER1_type 142 200 -15 1043 244 64 33 chr15 10335375 10335736 -75360018 - L2 LINE L2 -504 2810 2439 293 276 181 0 chr15 10336297 10336402 -75359352 + MIR SINE MIR 1 124 -138 303 271 37 56 chr15 10338589 10338696 -75357058 + L2 LINE L2 3160 3264 -8 52 17 0 0 chr15 10339004 10339063 -75356691 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr15 10339335 10339359 -75356395 + AT_rich Low_complexity Low_complexity 1 24 0 457 332 128 8 chr15 10340152 10340535 -75355219 - L1ME4a LINE L1 -125 5996 5568 1752 172 0 7 chr15 10340535 10340825 -75354929 + AluJo SINE Alu 1 288 -24 325 301 53 38 chr15 10341382 10341515 -75354239 + L3 LINE CR1 937 1071 -506 265 271 123 12 chr15 10341515 10341685 -75354069 + MER113 DNA MER1_type? 2 190 -331 303 259 168 76 chr15 10341720 10341821 -75353933 + MER113 DNA MER1_type? 307 397 -124 2182 109 0 0 chr15 10341821 10342115 -75353639 + AluSq SINE Alu 1 294 -19 303 259 168 76 chr15 10342115 10342210 -75353544 + MER113 DNA MER1_type? 397 521 0 21 0 0 0 chr15 10342211 10342232 -75353522 + AT_rich Low_complexity Low_complexity 1 21 0 489 369 47 4 chr15 10342334 10342613 -75353141 + L3 LINE CR1 1241 1531 -46 326 254 23 77 chr15 10342613 10342743 -75353011 - LTR67 LTR ERVL -1 556 434 1992 259 160 62 chr15 10344413 10345676 -75350078 - HAL1 LINE L1 -1 2506 1368 249 33 0 0 chr15 10345676 10345706 -75350048 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1992 259 160 62 chr15 10345706 10346626 -75349128 - HAL1 LINE L1 -1139 1368 77 2396 173 20 34 chr15 10347284 10347723 -75348031 - Tigger2a DNA MER2_type -1 433 1 185 333 0 16 chr15 10353642 10353705 -75342049 + MIR SINE MIR 49 110 -152 207 237 51 0 chr15 10353917 10353976 -75341778 + MIR SINE MIR 54 115 -93 392 242 200 32 chr15 10354309 10354499 -75341255 - MIR SINE MIR -38 224 3 1998 201 14 14 chr15 10354864 10355278 -75340476 + L1MD3 LINE L1 7582 7995 0 236 242 68 45 chr15 10357311 10357443 -75338311 + L2 LINE L2 3097 3231 -82 2485 59 0 7 chr15 10361998 10362302 -75333452 - AluY SINE Alu -9 302 1 187 182 0 0 chr15 10363265 10363298 -75332456 + MIR SINE MIR 46 78 -184 274 290 40 10 chr15 10363391 10363491 -75332263 + MIR SINE MIR 122 224 -38 393 312 153 0 chr15 10364802 10364959 -75330795 + MIR SINE MIR 29 209 -53 2243 119 0 6 chr15 10365078 10365389 -75330365 - AluSc SINE Alu 0 309 1 4185 34 0 2 chr15 10365806 10366309 -75329445 - L1PA5 LINE L1 -3 6151 5650 565 43 0 0 chr15 10366310 10366380 -75329374 + L1PA5 LINE L1 5565 5634 -520 1993 199 52 36 chr15 10366444 10366941 -75328813 - MER74A LTR ERVL -2 556 52 352 198 55 11 chr15 10367068 10367159 -75328595 + MER88 LTR ERVL 79 173 -291 * 1244 273 83 30 chr15 10367080 10367552 -75328202 - MER74B LTR ERVL -74 548 52 634 237 142 5 chr15 10369084 10369303 -75326451 + MIR SINE MIR 3 251 -11 1373 160 3 85 chr15 10369341 10369634 -75326120 + AluJb SINE Alu 42 310 -2 684 265 114 5 chr15 10373622 10373841 -75321913 - MIR SINE MIR -2 260 18 913 247 11 0 chr15 10375398 10375572 -75320182 + MER5A DNA MER1_type 5 180 -9 752 272 12 6 chr15 10375587 10375756 -75319998 + MER5B DNA MER1_type 8 177 -1 886 173 31 97 chr15 10375770 10376059 -75319695 + L1MB7 LINE L1 5915 6184 0 331 141 70 0 chr15 10376096 10376167 -75319587 - L1MB7 LINE L1 0 6184 6109 1216 221 0 9 chr15 10376206 10376437 -75319317 - AluJb SINE Alu -83 229 1 1239 194 108 60 chr15 10376437 10376727 -75319027 - L1MB8 LINE L1 -63 6115 5790 219 69 0 0 chr15 10376727 10376756 -75318998 + (TG)n Simple_repeat Simple_repeat 2 30 0 1239 194 108 60 chr15 10376756 10376965 -75318789 - L1MB8 LINE L1 -388 5790 5592 1762 143 124 0 chr15 10376970 10377341 -75318413 - L1MB4 LINE L1 -1 6990 6574 5203 218 40 26 chr15 10377347 10379092 -75316662 - L1MB4 LINE L1 -562 6415 4656 1318 257 54 37 chr15 10379095 10380066 -75315688 - L1MB4 LINE L1 -3585 3372 2431 328 287 160 40 chr15 10380072 10380222 -75315532 - L1MB4 LINE L1 -5737 1118 951 264 257 49 121 chr15 10380244 10380365 -75315389 - L1MB4 LINE L1 -6595 264 136 288 0 0 0 chr15 10380365 10380397 -75315357 + (CA)n Simple_repeat Simple_repeat 2 33 0 2280 112 3 0 chr15 10380399 10380704 -75315050 + AluSp SINE Alu 1 306 -7 264 257 49 121 chr15 10380704 10380844 -75314910 - L1MB4 LINE L1 -6724 135 19 280 331 62 28 chr15 10381717 10381895 -75313859 - MIR3 SINE MIR -13 195 12 327 270 150 0 chr15 10382185 10382285 -75313469 - L2 LINE L2 -6 3266 3152 18377 129 14 4 chr15 10382508 10386485 -75309269 + L1PA10 LINE L1 2160 6168 0 23 54 0 0 chr15 10387202 10387239 -75308515 + AT_rich Low_complexity Low_complexity 1 37 0 324 250 0 40 chr15 10388137 10388213 -75307541 - MER5B DNA MER1_type -2 176 104 189 253 74 84 chr15 10388219 10388314 -75307440 + MER5B DNA MER1_type 29 122 -56 183 336 43 17 chr15 10389556 10389672 -75306082 + MIR3 SINE MIR 75 193 -15 593 264 137 13 chr15 10390226 10390453 -75305301 - MIR SINE MIR 0 262 8 775 236 62 0 chr15 10390760 10390938 -75304816 - MER5A DNA MER1_type 0 189 1 405 327 89 6 chr15 10391138 10391306 -75304448 + L2 LINE L2 3132 3313 0 1749 161 36 30 chr15 10391338 10391471 -75304283 + AluJo SINE Alu 1 132 -180 2396 100 0 3 chr15 10391471 10391781 -75303973 + AluSq SINE Alu 2 310 -3 1749 161 36 30 chr15 10391781 10391951 -75303803 + AluJo SINE Alu 132 306 -6 236 156 18 193 chr15 10394362 10394471 -75301283 + MIR3 SINE MIR 116 205 -3 268 288 0 25 chr15 10395199 10395279 -75300475 - MIR SINE MIR -99 163 86 510 314 38 51 chr15 10395781 10396017 -75299737 - MIR SINE MIR 0 262 30 4953 153 18 17 chr15 10396161 10397594 -75298160 - L1PB4 LINE L1 0 6156 4722 2451 120 58 23 chr15 10397594 10398027 -75297727 - LTR7 LTR ERV1 0 450 3 4953 153 18 17 chr15 10398027 10398375 -75297379 - L1PB4 LINE L1 -1434 4722 4376 438 299 114 78 chr15 10398887 10399158 -75296596 + L2 LINE L2 2992 3272 0 288 242 24 65 chr15 10399810 10399934 -75295820 - MLT1J2 LTR MaLR -3 447 329 265 207 0 198 chr15 10400020 10400136 -75295618 - MER5A DNA MER1_type -84 105 13 398 246 90 8 chr15 10400230 10400352 -75295402 - MLT1J2 LTR MaLR -315 135 4 1546 130 159 88 chr15 10400478 10400855 -75294899 - MER4A LTR ERV1 0 664 261 429 156 89 0 chr15 10400855 10400945 -75294809 - MER4A LTR ERV1 -566 98 1 14750 99 52 29 chr15 10400954 10403567 -75292187 - MER4A-int LTR ERV1 0 6598 3924 2436 112 87 26 chr15 10403585 10404113 -75291641 - MER4A-int LTR ERV1 -3302 3296 2737 310 214 0 14 chr15 10404113 10404183 -75291571 + LTR8 LTR ERV1 1 69 -622 1234 77 68 197 chr15 10404223 10404416 -75291338 - L1MA5A LINE L1 -2 6295 6093 400 108 31 0 chr15 10404416 10404481 -75291273 + MADE1 DNA Mariner 1 67 -13 1234 77 68 197 chr15 10404481 10404574 -75291180 - L1MA5A LINE L1 -204 6093 5990 890 161 92 0 chr15 10404574 10404748 -75291006 + LTR8 LTR ERV1 68 257 -434 3613 81 30 95 chr15 10404748 10405029 -75290725 - MER4A-int LTR ERV1 -4103 2495 2197 2185 77 17 30 chr15 10405029 10405327 -75290427 + AluSg SINE Alu 1 294 -16 3613 81 30 95 chr15 10405327 10405821 -75289933 - MER4A-int LTR ERV1 -4401 2197 1771 1145 86 74 149 chr15 10405819 10406135 -75289619 - MER4A-int LTR ERV1 -4266 1284 503 * 351 219 16 31 chr15 10406122 10406250 -75289504 - MER4A-int LTR ERV1 -5997 601 476 * 2555 81 70 42 chr15 10406407 10406634 -75289120 - MER4A-int LTR ERV1 -6156 442 223 2279 78 0 7 chr15 10406634 10406928 -75288826 + AluY SINE Alu 1 292 -19 2555 81 70 42 chr15 10406928 10407130 -75288624 - MER4A-int LTR ERV1 -6375 223 1 1495 144 25 76 chr15 10407133 10407495 -75288259 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 10407495 10407585 -75288169 - MER4A LTR ERV1 -566 98 1 184 379 0 0 chr15 10408931 10408997 -75286757 - MIR SINE MIR -190 72 7 1164 71 137 11 chr15 10409708 10409891 -75285863 - MER4A-int LTR ERV1 -6392 206 1 1496 144 25 76 chr15 10409894 10410256 -75285498 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 10410256 10410346 -75285408 - MER4A LTR ERV1 -566 98 1 784 211 158 39 chr15 10411360 10411639 -75284115 - MLT1D LTR MaLR -193 312 1 214 391 0 0 chr15 10411639 10411731 -75284023 + L2 LINE L2 2575 2666 -648 206 143 0 71 chr15 10411840 10411882 -75283872 - L2 LINE L2 -11 3302 3264 * 787 262 17 42 chr15 10411855 10412092 -75283662 - MIR SINE MIR -17 245 15 435 307 68 6 chr15 10412227 10412403 -75283351 + MIR SINE MIR 68 254 -8 941 107 0 8 chr15 10412499 10412630 -75283124 - AluY SINE Alu -25 286 157 822 249 70 0 chr15 10414540 10414781 -75280973 - MIR SINE MIR -3 259 2 280 298 155 10 chr15 10414843 10415019 -75280735 - MIR SINE MIR -52 210 16 673 151 0 0 chr15 10416007 10416113 -75279641 + AluJb SINE Alu 2 107 -205 1823 147 11 0 chr15 10416114 10416380 -75279374 + AluSx SINE Alu 22 290 -22 296 273 55 27 chr15 10417666 10417776 -75277978 + MIR SINE MIR 52 164 -98 2321 119 3 0 chr15 10420317 10420628 -75275126 - AluSx SINE Alu 0 312 1 1464 176 35 4 chr15 10423124 10423379 -75272375 - AluJo SINE Alu 0 312 50 323 273 95 11 chr15 10424087 10424245 -75271509 - MIR SINE MIR -62 146 11 257 338 78 0 chr15 10426340 10426482 -75269272 + L2 LINE L2 3117 3269 -3 2115 147 35 0 chr15 10426614 10426962 -75268792 - MER46B DNA MER2_type -1 235 1 1952 159 0 0 chr15 10427312 10427601 -75268153 - AluSx SINE Alu -9 303 15 2404 79 7 0 chr15 10428011 10428314 -75267440 - AluSp SINE Alu -8 305 1 534 271 132 16 chr15 10429284 10429587 -75266167 - L1ME4a LINE L1 -9 6112 5775 921 228 47 67 chr15 10429706 10430048 -75265706 + MER46C DNA MER2_type 4 338 0 2381 69 7 0 chr15 10432312 10432601 -75263153 + AluY SINE Alu 1 291 -20 22 0 0 0 chr15 10432865 10432887 -75262867 + AT_rich Low_complexity Low_complexity 1 22 0 509 285 225 26 chr15 10436536 10437136 -75258618 + L2 LINE L2 2574 3308 -5 1827 128 207 11 chr15 10439477 10439835 -75255919 - MSTA LTR MaLR 0 428 1 416 226 185 46 chr15 10439978 10440240 -75255514 - MER34 LTR ERV1 0 739 333 292 214 88 34 chr15 10440343 10440475 -75255279 - MER34C LTR ERV1 -415 128 1 6199 111 90 7 chr15 10440667 10441590 -75254164 + THE1-int LTR MaLR 121 1120 -460 539 268 81 51 chr15 10441590 10441825 -75253929 - Charlie8 DNA MER1_type -2175 242 1 226 318 56 56 chr15 10441845 10441971 -75253783 - L2 LINE L2 -176 3096 2971 239 342 154 23 chr15 10442206 10442648 -75253106 - L2 LINE L2 -590 2724 2225 1064 227 18 0 chr15 10444695 10444915 -75250839 + MER58A DNA MER1_type 1 224 0 2283 107 3 7 chr15 10447853 10448161 -75247593 - AluSx SINE Alu -5 307 1 536 306 40 0 chr15 10449021 10449194 -75246560 + MIR SINE MIR 13 192 -70 211 294 11 54 chr15 10451084 10451176 -75244578 + MIR3 SINE MIR 105 192 -16 1859 23 0 0 chr15 10451613 10451827 -75243927 - L1PA4 LINE L1 -1 6154 5941 259 178 297 10 chr15 10452054 10452155 -75243599 + MER5A DNA MER1_type 55 184 -5 186 298 18 0 chr15 10452543 10452600 -75243154 - L2 LINE L2 -533 2781 2724 541 192 0 31 chr15 10454450 10454580 -75241174 - L1MA9 LINE L1 -30 6282 6157 1012 144 0 0 chr15 10455570 10455716 -75240038 + FRAM SINE Alu 1 146 -30 29 0 0 0 chr15 10455723 10455752 -75240002 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr15 10458693 10458714 -75237040 + (A)n Simple_repeat Simple_repeat 1 21 0 316 293 0 12 chr15 10458931 10459013 -75236741 - MIR SINE MIR -144 118 38 2439 83 0 0 chr15 10460801 10461102 -75234652 + AluSc SINE Alu 1 301 -8 605 246 163 5 chr15 10461104 10461307 -75234447 + MIR SINE MIR 23 257 -5 1088 198 12 63 chr15 10461307 10461559 -75234195 + MER8 DNA MER2_type 1 239 0 230 321 80 9 chr15 10462170 10462282 -75233472 - MIR3 SINE MIR -7 201 82 180 250 48 36 chr15 10463817 10463901 -75231853 - L2 LINE L2 0 3313 3229 2240 95 3 7 chr15 10464043 10464337 -75231417 + AluSc SINE Alu 1 293 -16 385 248 87 27 chr15 10464472 10464621 -75231133 - MER103 DNA DNA -6 160 3 1732 183 17 7 chr15 10464885 10465180 -75230574 + AluJb SINE Alu 1 298 -14 217 204 0 0 chr15 10465346 10465390 -75230364 - L2 LINE L2 -553 2761 2718 26 0 0 0 chr15 10466073 10466099 -75229655 + AT_rich Low_complexity Low_complexity 1 26 0 333 298 35 0 chr15 10466985 10467099 -75228655 + L2 LINE L2 3184 3301 -12 1708 180 153 54 chr15 10467142 10467658 -75228096 - MLT1E2 LTR MaLR -8 618 52 1635 259 64 23 chr15 10468676 10469162 -75226592 - MLT1E LTR MaLR 0 593 88 188 204 74 0 chr15 10470862 10470916 -75224838 + L2 LINE L2 2906 2963 -351 373 277 84 25 chr15 10471067 10471269 -75224485 + MIR SINE MIR 46 259 -3 1397 119 0 89 chr15 10471734 10471970 -75223784 - MER1B DNA MER1_type 0 339 125 197 241 48 24 chr15 10473278 10473361 -75222393 + MIR SINE MIR 178 262 0 203 189 0 0 chr15 10474804 10474841 -75220913 + (TA)n Simple_repeat Simple_repeat 2 38 0 277 104 0 0 chr15 10474841 10474889 -75220865 + LTR66 LTR ERVL 394 441 -169 276 350 8 0 chr15 10474899 10475016 -75220738 + MIR SINE MIR 134 251 -11 364 307 123 0 chr15 10475481 10475660 -75220094 + MIR SINE MIR 49 249 -13 766 188 34 74 chr15 10476195 10476271 -75219483 - MER5A DNA MER1_type 0 189 112 1892 161 0 3 chr15 10476271 10476562 -75219192 - AluSg SINE Alu -20 290 1 766 188 34 74 chr15 10476562 10476661 -75219093 - MER5A DNA MER1_type -77 112 21 1824 204 70 31 chr15 10477546 10478035 -75217719 + Charlie4a DNA MER1_type 1 508 0 2204 118 0 3 chr15 10478040 10478337 -75217417 + AluSg SINE Alu 1 296 -14 1391 50 0 96 chr15 10478375 10478603 -75217151 + AluY SINE Alu 101 309 0 507 323 71 28 chr15 10478722 10479217 -75216537 + L1ME4a LINE L1 5305 5820 -301 413 179 163 0 chr15 10479328 10479451 -75216303 + L1ME4a LINE L1 5976 6118 -3 320 123 14 0 chr15 10480404 10480477 -75215277 + (TG)n Simple_repeat Simple_repeat 2 75 0 180 111 0 0 chr15 10481000 10481027 -75214727 + (GGA)n Simple_repeat Simple_repeat 1 27 0 283 260 104 0 chr15 10481967 10482063 -75213691 - MIR SINE MIR -108 154 49 289 342 43 35 chr15 10482216 10482447 -75213307 - MIR SINE MIR -10 252 20 2067 130 135 23 chr15 10483451 10483836 -75211918 + MSTA LTR MaLR 1 428 0 302 191 191 9 chr15 10484864 10484969 -75210785 - MIR SINE MIR -62 146 23 197 349 0 0 chr15 10485015 10485078 -75210676 - MIR SINE MIR -108 154 92 477 262 8 16 chr15 10485278 10485404 -75210350 + MIR SINE MIR 39 163 -99 812 139 151 23 chr15 10486533 10486705 -75209049 - MLT1D LTR MaLR -4 501 308 532 146 48 68 chr15 10486705 10486808 -75208946 - MLT1D LTR MaLR -403 102 2 2528 64 0 0 chr15 10488260 10488557 -75207197 - AluY SINE Alu -14 297 1 5750 148 32 28 chr15 10488780 10489797 -75205957 + L1PA6 LINE L1 11 1032 -5114 * 29198 64 12 19 chr15 10489791 10493555 -75202199 + L1PA6 LINE L1 1565 5293 -861 2551 53 3 3 chr15 10493555 10493855 -75201899 + AluY SINE Alu 1 300 -11 29198 64 12 19 chr15 10493855 10494709 -75201045 + L1PA6 LINE L1 5293 6151 -3 252 204 0 0 chr15 10494746 10494800 -75200954 - MER4-int LTR ERV1 -5433 1165 1112 5379 189 105 14 chr15 10496043 10497364 -75198390 - Charlie1a DNA MER1_type -2 1453 12 2427 64 7 0 chr15 10499577 10499875 -75195879 - AluY SINE Alu -11 300 1 1549 179 7 37 chr15 10501124 10501420 -75194334 - AluJo SINE Alu -19 293 7 202 373 9 18 chr15 10502316 10502426 -75193328 - MIR3 SINE MIR -11 197 89 198 0 0 0 chr15 10504546 10504568 -75191186 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 660 119 34 17 chr15 10504568 10504744 -75191010 + CT-rich Low_complexity Low_complexity 2 180 0 417 332 81 9 chr15 10507338 10507549 -75188205 - MIR SINE MIR -32 230 5 382 306 202 31 chr15 10507576 10508220 -75187534 - L2 LINE L2 -559 2755 2002 185 244 0 0 chr15 10508523 10508568 -75187186 - L2 LINE L2 -4 3309 3265 1816 158 68 50 chr15 10508634 10509015 -75186739 - MLT1B LTR MaLR -2 388 1 2203 103 0 39 chr15 10509329 10509640 -75186114 + AluSx SINE Alu 11 309 -3 222 171 0 0 chr15 10510387 10510428 -75185326 + (CA)n Simple_repeat Simple_repeat 2 42 0 330 26 0 0 chr15 10510428 10510467 -75185287 + (TC)n Simple_repeat Simple_repeat 1 39 0 288 146 0 0 chr15 10510707 10510755 -75184999 - L2 LINE L2 -4 3309 3262 21 0 0 0 chr15 10511466 10511487 -75184267 + AT_rich Low_complexity Low_complexity 1 21 0 2270 155 16 25 chr15 10511543 10512222 -75183532 - L1MB3 LINE L1 -4 6179 5450 183 80 0 0 chr15 10512755 10512780 -75182974 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1826 162 223 39 chr15 10514007 10514470 -75181284 - LTR10A LTR ERV1 -61 548 1 265 359 0 76 chr15 10514500 10514698 -75181056 - L2 LINE L2 -91 3181 2999 1630 184 114 11 chr15 10514778 10515137 -75180617 + MSTD LTR MaLR 1 396 0 1485 151 0 37 chr15 10515424 10515669 -75180085 - MSTB LTR MaLR 0 426 191 1080 131 0 0 chr15 10515671 10515824 -75179930 - AluJb SINE Alu -8 304 152 6293 167 40 23 chr15 10515824 10516567 -75179187 - MSTA-int LTR MaLR -502 1149 379 2617 68 0 0 chr15 10516567 10516874 -75178880 - AluY SINE Alu -4 307 1 6293 167 40 23 chr15 10516874 10517260 -75178494 - MSTA-int LTR MaLR -1272 379 1 2301 170 70 0 chr15 10517261 10517660 -75178094 - MSTA LTR MaLR -1 427 1 578 269 39 14 chr15 10518072 10518270 -75177484 + MIR SINE MIR 18 219 -43 210 160 69 30 chr15 10518522 10518653 -75177101 + (ATGGTG)n Simple_repeat Simple_repeat 1 136 0 221 180 15 45 chr15 10518727 10518865 -75176889 + (ATGGTG)n Simple_repeat Simple_repeat 1 133 0 864 240 47 35 chr15 10518867 10518970 -75176784 - MIR SINE MIR -1 261 161 2369 123 19 25 chr15 10518970 10519335 -75176419 - MLT1A1 LTR MaLR -2 363 1 864 240 47 35 chr15 10519335 10519489 -75176265 - MIR SINE MIR -101 161 1 1440 174 15 120 chr15 10520889 10521230 -75174524 - MLT1A1 LTR MaLR 0 365 72 2090 154 95 3 chr15 10521230 10521620 -75174134 + MSTB LTR MaLR 1 426 0 1440 174 15 120 chr15 10521620 10521686 -75174068 - MLT1A1 LTR MaLR -293 72 1 1122 314 24 22 chr15 10522494 10522952 -75172802 + L2 LINE L2 2195 2653 -661 343 343 7 29 chr15 10523676 10523816 -75171938 - L2 LINE L2 0 3272 3136 21 0 0 0 chr15 10524867 10524888 -75170866 + AT_rich Low_complexity Low_complexity 1 21 0 1939 136 0 40 chr15 10525917 10526218 -75169536 + AluJb SINE Alu 5 293 -19 2444 220 69 6 chr15 10526289 10526808 -75168946 + MLT1F1 LTR MaLR 8 559 -8 631 108 10 39 chr15 10527823 10527925 -75167829 + HY3 scRNA scRNA 1 99 -2 207 0 0 0 chr15 10528685 10528708 -75167046 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 306 280 160 40 chr15 10528933 10529083 -75166671 - MIR3 SINE MIR -19 189 22 450 53 0 0 chr15 10530484 10530541 -75165213 + (CA)n Simple_repeat Simple_repeat 2 58 0 2363 72 0 56 chr15 10531007 10531327 -75164427 + AluY SINE Alu 1 302 -9 1160 189 62 8 chr15 10532022 10532266 -75163488 + MER63 DNA MER1_type 641 897 -163 2053 228 86 4 chr15 10533301 10533837 -75161917 + MER63 DNA MER1_type 481 1060 0 1349 163 40 0 chr15 10533839 10534066 -75161688 - MER46A DNA MER2_type 0 236 1 753 178 51 51 chr15 10534608 10534765 -75160989 - MER20 DNA MER1_type -55 164 8 23 86 0 0 chr15 10535400 10535458 -75160296 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr15 10535508 10535538 -75160216 + AT_rich Low_complexity Low_complexity 1 30 0 2473 59 0 23 chr15 10537431 10537734 -75158020 + AluY SINE Alu 1 296 -15 591 274 22 28 chr15 10537987 10538166 -75157588 + MER5B DNA MER1_type 1 178 0 5692 127 24 3 chr15 10538366 10539250 -75156504 + L1MC1 LINE L1 5432 6333 0 2298 112 0 3 chr15 10540010 10540322 -75155432 - AluSx SINE Alu -1 311 1 2151 119 0 49 chr15 10542062 10542390 -75153364 - AluSx SINE Alu 0 312 1 794 234 0 18 chr15 10542420 10542591 -75153163 - AluJb SINE Alu -8 304 137 366 314 58 5 chr15 10543981 10544169 -75151585 - MIR SINE MIR 0 262 65 2349 77 0 3 chr15 10546930 10547245 -75148509 - AluY SINE Alu 0 314 1 855 280 0 4 chr15 10548653 10548878 -75146876 - MER58A DNA MER1_type 0 224 1 373 288 70 101 chr15 10549054 10549370 -75146384 + L2 LINE L2 2577 2882 -432 216 186 43 161 chr15 10549573 10549734 -75146020 + L2 LINE L2 3078 3219 -94 519 288 85 54 chr15 10549904 10550410 -75145344 - L2 LINE L2 -195 3077 2560 192 40 0 0 chr15 10550413 10550438 -75145316 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 237 313 210 9 chr15 10550567 10550800 -75144954 - L2 LINE L2 -976 2338 2059 255 274 0 60 chr15 10550836 10550920 -75144834 + L2 LINE L2 3188 3266 -6 1931 160 0 7 chr15 10551345 10551633 -75144121 - AluSx SINE Alu -26 286 1 21 0 0 0 chr15 10551718 10551739 -75144015 + AT_rich Low_complexity Low_complexity 1 21 0 267 111 0 0 chr15 10551897 10551942 -75143812 - AluSp/q SINE Alu -1 302 258 2147 134 0 3 chr15 10551942 10552247 -75143507 - AluSx SINE Alu -8 304 1 1986 166 33 0 chr15 10553311 10553642 -75142112 + MER2 DNA MER2_type 2 343 -1 11142 76 4 24 chr15 10555251 10557592 -75138162 - L1PA7 LINE L1 -3 6151 3851 1678 99 5 5 chr15 10558457 10558678 -75137076 + AluSg/x SINE Alu 70 290 -19 758 251 138 10 chr15 10558678 10559118 -75136636 + L2 LINE L2 2534 3074 -239 205 219 0 0 chr15 10559119 10559160 -75136594 + L2 LINE L2 2503 2543 -771 536 241 62 0 chr15 10560572 10560734 -75135020 + L1ME LINE L1 5177 5348 -798 796 161 0 29 chr15 10560791 10560928 -75134826 - FLAM_C SINE Alu 0 133 1 1169 229 172 3 chr15 10560950 10561304 -75134450 + L1ME LINE L1 5386 5799 -371 2410 76 0 3 chr15 10561735 10562039 -75133715 - AluY SINE Alu -8 303 1 2282 112 0 0 chr15 10563308 10563603 -75132151 - AluSx SINE Alu -17 295 1 665 105 0 129 chr15 10563824 10563948 -75131806 + FRAM SINE Alu 57 164 -12 430 268 21 21 chr15 10564590 10564732 -75131022 - MLT1J LTR MaLR -369 142 1 31913 105 16 59 chr15 10565512 10571283 -75124471 + L1PA7 LINE L1 1 5453 -701 2240 111 0 7 chr15 10571283 10571589 -75124165 + AluSg SINE Alu 1 304 -6 31913 105 16 59 chr15 10571589 10572262 -75123492 + L1PA7 LINE L1 5453 6154 0 2291 114 3 0 chr15 10572424 10572723 -75123031 + AluSg SINE Alu 1 300 -10 2523 84 0 0 chr15 10573023 10573333 -75122421 + AluSx SINE Alu 1 310 -2 215 300 0 0 chr15 10573565 10573635 -75122119 - MIR SINE MIR -108 154 85 2245 121 0 6 chr15 10573671 10573985 -75121769 + AluSx SINE Alu 1 312 0 180 310 11 46 chr15 10574848 10574935 -75120819 - MIR SINE MIR -123 139 56 2025 124 18 0 chr15 10577344 10577627 -75118127 + AluJb SINE Alu 1 288 -24 386 185 0 0 chr15 10577746 10577811 -75117943 + FLAM_A SINE Alu 69 133 0 232 27 54 0 chr15 10578031 10578068 -75117686 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1547 167 65 4 chr15 10578142 10578418 -75117336 + AluJb SINE Alu 1 293 -19 229 286 143 29 chr15 10578450 10578590 -75117164 + L3 LINE CR1 341 496 -1081 2315 89 0 0 chr15 10578926 10579217 -75116537 + AluSc SINE Alu 1 291 -18 222 37 0 0 chr15 10579966 10579993 -75115761 + (GAA)n Simple_repeat Simple_repeat 2 28 0 604 234 8 0 chr15 10583497 10583621 -75112133 + FRAM SINE Alu 34 158 -18 2252 95 0 0 chr15 10584309 10584619 -75111135 + AluSx SINE Alu 1 310 0 329 173 0 0 chr15 10585636 10585717 -75110037 - AluS SINE Alu 0 311 231 2346 63 0 30 chr15 10586142 10586444 -75109310 + AluY SINE Alu 1 293 -18 193 333 27 41 chr15 10586873 10587020 -75108734 + MIR3 SINE MIR 36 180 -28 1114 192 28 0 chr15 10587311 10587525 -75108229 + MER58A DNA MER1_type 4 223 -1 906 226 27 21 chr15 10589534 10589720 -75106034 - MER5A DNA MER1_type -2 187 1 200 29 0 59 chr15 10593942 10593976 -75101778 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 844 256 135 27 chr15 10595194 10595826 -75099928 - L2 LINE L2 -4 3309 2600 725 173 119 55 chr15 10595835 10596037 -75099717 + L1MB5 LINE L1 5947 6161 -13 315 0 0 0 chr15 10596048 10596083 -75099671 + (TA)n Simple_repeat Simple_repeat 1 35 0 2129 109 3 31 chr15 10596086 10596407 -75099347 - AluSx SINE Alu 0 312 1 2490 71 3 10 chr15 10596407 10596716 -75099038 - AluY SINE Alu -4 307 1 279 0 0 0 chr15 10596718 10596749 -75099005 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4816 250 123 25 chr15 10596756 10597785 -75097969 - L2 LINE L2 -713 2601 1674 198 0 0 0 chr15 10597785 10597807 -75097947 + (CA)n Simple_repeat Simple_repeat 2 23 0 4816 250 123 25 chr15 10597807 10598614 -75097140 - L2 LINE L2 -1640 1674 586 2113 235 73 93 chr15 10599246 10600049 -75095705 - MER21B LTR ERV1 -64 799 13 741 131 31 0 chr15 10600348 10600668 -75095086 + (TA)n Simple_repeat Simple_repeat 1 330 0 204 347 0 0 chr15 10601195 10601270 -75094484 - L3 LINE CR1 -4 1573 1499 362 331 68 37 chr15 10601406 10601702 -75094052 - L3 LINE CR1 -234 1343 1039 2214 116 3 25 chr15 10601764 10602082 -75093672 - AluSx SINE Alu -1 311 1 1130 68 0 0 chr15 10602086 10602219 -75093535 - AluSq/x SINE Alu -180 133 1 2392 94 3 0 chr15 10602513 10602822 -75092932 - AluSx SINE Alu -2 310 1 558 184 10 0 chr15 10602958 10603056 -75092698 - L1PB4 LINE L1 -5 6151 6053 2830 154 30 20 chr15 10603056 10603557 -75092197 + L1PB4 LINE L1 5560 6065 -91 918 256 61 104 chr15 10604316 10604473 -75091281 - MLT1J LTR MaLR -6 505 343 2219 114 0 13 chr15 10604473 10604780 -75090974 - AluSx SINE Alu -9 303 1 918 256 61 104 chr15 10604780 10605150 -75090604 - MLT1J LTR MaLR -168 343 1 3260 191 60 76 chr15 10605482 10606301 -75089453 + MER21B LTR ERV1 1 806 -57 5160 151 19 22 chr15 10607308 10608214 -75087540 - MER4D LTR ERV1 0 903 1 2146 114 7 7 chr15 10609906 10610204 -75085550 - AluSx SINE Alu -14 298 1 184 307 102 0 chr15 10610832 10610920 -75084834 + MIR3 SINE MIR 89 185 -23 2621 59 0 0 chr15 10611859 10612166 -75083588 - AluY SINE Alu -4 307 1 188 195 24 37 chr15 10612278 10612360 -75083394 + CT-rich Low_complexity Low_complexity 3 83 0 742 160 24 0 chr15 10612767 10612892 -75082862 + FLAM_C SINE Alu 5 132 -1 1833 154 17 7 chr15 10613137 10613436 -75082318 - AluJo SINE Alu -6 306 5 245 221 44 44 chr15 10614636 10614704 -75081050 + MIR SINE MIR 73 140 -122 1062 123 0 59 chr15 10616005 10616192 -75079562 - AluSg/x SINE Alu 0 312 137 27 0 0 0 chr15 10617580 10617607 -75078147 + AT_rich Low_complexity Low_complexity 1 27 0 2440 63 0 20 chr15 10617616 10617917 -75077837 + AluY SINE Alu 1 295 -16 264 30 0 0 chr15 10617942 10617975 -75077779 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 286 318 0 0 chr15 10618101 10618189 -75077565 + L3b LINE CR1 1375 1462 -121 497 288 51 68 chr15 10618629 10619160 -75076594 + L1MEd LINE L1 657 1178 -4941 2298 102 7 13 chr15 10621012 10621315 -75074439 + AluSx SINE Alu 2 302 -10 1224 116 0 0 chr15 10621317 10621481 -75074273 + AluSg/x SINE Alu 136 299 -13 267 286 17 17 chr15 10624007 10624126 -75071628 + CT-rich Low_complexity Low_complexity 1 119 0 2255 89 3 0 chr15 10625237 10625529 -75070225 + AluSq SINE Alu 1 293 -20 2188 108 3 7 chr15 10625785 10626118 -75069636 + AluSq SINE Alu 1 332 0 216 97 0 0 chr15 10628398 10628429 -75067325 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 367 286 18 9 chr15 10628430 10628542 -75067212 - L2 LINE L2 -12 3301 3189 24 32 0 0 chr15 10628936 10628967 -75066787 + AT_rich Low_complexity Low_complexity 1 31 0 2189 116 0 6 chr15 10632119 10632430 -75063324 - AluSq SINE Alu -4 309 1 440 256 74 0 chr15 10634177 10634298 -75061456 + MIR SINE MIR 58 187 -75 15220 126 31 11 chr15 10634309 10635863 -75059891 + Tigger1 DNA MER2_type 1 1621 -797 2440 63 3 16 chr15 10635863 10636166 -75059588 + AluY SINE Alu 1 299 -12 15220 126 31 11 chr15 10636166 10636971 -75058783 + Tigger1 DNA MER2_type 1621 2408 -10 189 346 29 19 chr15 10638284 10638388 -75057366 - L2 LINE L2 -50 3222 3118 2100 128 3 3 chr15 10638408 10638713 -75057041 + AluSx SINE Alu 1 305 -7 2328 87 0 7 chr15 10638769 10639069 -75056685 + AluSx SINE Alu 1 298 -14 2200 101 27 13 chr15 10639120 10639418 -75056336 + AluSq SINE Alu 1 302 -11 1875 168 0 7 chr15 10640397 10640683 -75055071 + AluSx SINE Alu 1 284 -28 351 0 0 0 chr15 10640683 10640722 -75055032 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 13 13 chr15 10641846 10641923 -75053831 + CT-rich Low_complexity Low_complexity 6 82 0 472 282 13 13 chr15 10642269 10642418 -75053336 + MIR3 SINE MIR 58 206 -2 313 215 43 21 chr15 10642503 10642596 -75053158 - L1M4 LINE L1 -2947 3199 3105 325 250 27 36 chr15 10646145 10646257 -75049497 - L2 LINE L2 0 3272 3162 249 276 0 0 chr15 10646397 10646455 -75049299 + L2 LINE L2 3225 3282 -31 360 308 171 31 chr15 10646469 10646935 -75048819 - L2 LINE L2 -32 3281 2755 2180 132 3 0 chr15 10647467 10647777 -75047977 + AluJb SINE Alu 1 311 -1 191 309 32 11 chr15 10648008 10648102 -75047652 - MIR SINE MIR -16 246 151 2497 66 0 3 chr15 10649569 10649872 -75045882 + AluY SINE Alu 1 302 -9 209 289 0 0 chr15 10650349 10650394 -75045360 - L2 LINE L2 -14 3258 3214 270 347 110 23 chr15 10650810 10650983 -75044771 - L2 LINE L2 -955 2359 2172 303 277 128 14 chr15 10651706 10651778 -75043976 + MER5A DNA MER1_type 19 81 -108 2218 114 3 3 chr15 10651778 10652085 -75043669 - AluSq SINE Alu -6 307 1 303 277 128 14 chr15 10652085 10652160 -75043594 + MER5A DNA MER1_type 81 183 -6 1141 224 91 100 chr15 10652359 10652935 -75042819 - MLT1H1 LTR MaLR -2 553 5 312 270 305 6 chr15 10653233 10653407 -75042347 + MIR SINE MIR 19 244 -18 2620 58 0 3 chr15 10655358 10655667 -75040087 - AluY SINE Alu -3 308 1 428 273 111 6 chr15 10655815 10656029 -75039725 + MIR SINE MIR 2 241 -21 2325 91 0 10 chr15 10656630 10656928 -75038826 + AluSg SINE Alu 1 295 -15 311 259 118 0 chr15 10656929 10657064 -75038690 + L1ME3A LINE L1 5626 5776 -345 1026 244 167 26 chr15 10657493 10657984 -75037770 - L1ME3A LINE L1 -223 5947 5388 21 36 0 0 chr15 10658539 10658567 -75037187 + AT_rich Low_complexity Low_complexity 1 28 0 2232 110 0 13 chr15 10660443 10660742 -75035012 + AluSg SINE Alu 1 295 -15 2300 80 0 20 chr15 10661736 10662035 -75033719 - AluSx SINE Alu -19 293 1 436 258 50 3 chr15 10662568 10662729 -75033025 - MIR SINE MIR -63 145 19 2225 75 4 7 chr15 10663182 10663490 -75032264 - AluSg SINE Alu 0 307 1 1424 181 19 98 chr15 10663663 10664083 -75031671 - MLT1B LTR MaLR -3 387 1 2238 101 3 10 chr15 10664742 10665039 -75030715 - AluSp SINE Alu -18 295 1 1097 282 153 26 chr15 10667790 10668286 -75027468 + L2 LINE L2 1402 1960 -1354 749 94 21 0 chr15 10668359 10668455 -75027299 - AluS SINE Alu -214 99 2 321 213 16 0 chr15 10668460 10668521 -75027233 + L2 LINE L2 3237 3298 -15 1376 163 43 25 chr15 10668764 10669040 -75026714 - AluJb SINE Alu -31 281 1 2016 120 20 20 chr15 10669149 10669450 -75026304 - AluSx SINE Alu -11 301 1 2184 93 52 0 chr15 10674773 10674891 -75020863 + AluY SINE Alu 1 111 -200 269 26 26 0 chr15 10674891 10674929 -75020825 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2184 93 52 0 chr15 10674929 10675100 -75020654 + AluY SINE Alu 111 305 -6 624 236 224 24 chr15 10675194 10675440 -75020314 + L1ME3A LINE L1 5876 6170 0 353 174 73 64 chr15 10675696 10675805 -75019949 - MER5B DNA MER1_type -68 110 1 507 294 289 7 chr15 10676384 10676796 -75018958 + L2 LINE L2 2115 2642 -672 418 341 29 65 chr15 10676945 10677191 -75018563 + L2 LINE L2 3000 3236 -36 23 33 0 0 chr15 10677563 10677593 -75018161 + AT_rich Low_complexity Low_complexity 1 30 0 2143 119 0 3 chr15 10677816 10678111 -75017643 + AluSq SINE Alu 1 294 -19 249 154 91 118 chr15 10679017 10679127 -75016627 + MER5A DNA MER1_type 48 154 -35 2485 77 7 0 chr15 10679621 10679931 -75015823 - AluSx SINE Alu 0 312 1 327 146 66 13 chr15 10679995 10680146 -75015608 + (TA)n Simple_repeat Simple_repeat 2 160 0 248 350 120 26 chr15 10680243 10680552 -75015202 + L2 LINE L2 2316 2653 -661 427 267 87 6 chr15 10680673 10680834 -75014920 - MIR SINE MIR -12 250 77 2301 102 0 0 chr15 10682821 10683115 -75012639 + AluSx SINE Alu 1 294 -18 1077 96 0 0 chr15 10684064 10684200 -75011554 + AluSq/x SINE Alu 1 136 -177 2116 114 0 0 chr15 10684200 10684506 -75011248 + AluSg SINE Alu 1 306 0 347 279 163 54 chr15 10684629 10685109 -75010645 + L1M4 LINE L1 4533 5064 -1082 4512 28 0 4 chr15 10685600 10686099 -75009655 + L1PA3 LINE L1 5659 6155 0 994 284 59 36 chr15 10686099 10686624 -75009130 + L1MEc LINE L1 1543 2079 -4317 1746 178 16 3 chr15 10687612 10687916 -75007838 - AluJo SINE Alu -4 308 1 684 202 0 0 chr15 10687926 10688040 -75007714 - AluJb SINE Alu -14 298 185 1645 164 3 50 chr15 10689114 10689437 -75006317 + AluJo SINE Alu 1 308 -4 339 263 113 38 chr15 10690404 10690537 -75005217 - MIR3 SINE MIR -33 175 33 503 161 0 58 chr15 10690595 10690682 -75005072 - FLAM_A SINE Alu -59 83 2 686 255 83 108 chr15 10692597 10692680 -75003074 - MLT1J LTR MaLR -7 504 420 2452 124 10 41 chr15 10692680 10692840 -75002914 + THE1C LTR MaLR 1 164 -211 1914 97 0 12 chr15 10692840 10693097 -75002657 - AluSc SINE Alu -19 290 37 2452 124 10 41 chr15 10693097 10693323 -75002431 + THE1C LTR MaLR 164 375 0 686 255 83 108 chr15 10693323 10693756 -75001998 - MLT1J LTR MaLR -91 420 1 259 344 129 60 chr15 10694676 10695109 -75000645 - L2 LINE L2 -2 3270 2808 24 0 0 0 chr15 10695201 10695225 -75000529 + AT_rich Low_complexity Low_complexity 1 24 0 1779 93 138 4 chr15 10695299 10695546 -75000208 - AluSc SINE Alu -19 280 1 26 0 0 0 chr15 10695600 10695626 -75000128 + AT_rich Low_complexity Low_complexity 1 26 0 245 300 50 0 chr15 10696834 10696894 -74998860 + L2 LINE L2 3193 3255 -17 1483 193 39 3 chr15 10697360 10697645 -74998109 + AluJb SINE Alu 1 295 -17 11378 52 11 2 chr15 10697766 10699881 -74995873 - L1PA6 LINE L1 -4 6150 4021 575 188 111 0 chr15 10699953 10700070 -74995684 + FRAM SINE Alu 1 126 -50 2187 128 0 0 chr15 10700481 10700779 -74994975 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 10701043 10701064 -74994690 + AT_rich Low_complexity Low_complexity 1 21 0 1786 128 43 7 chr15 10701068 10701384 -74994370 + AluY SINE Alu 1 326 0 1834 167 7 7 chr15 10701853 10702153 -74993601 - AluJo SINE Alu -12 300 1 180 317 5 156 chr15 10702154 10702353 -74993401 + L2 LINE L2 2588 2756 -558 289 222 69 0 chr15 10702374 10702446 -74993308 + L1MEc LINE L1 27 103 -6293 2019 112 22 25 chr15 10702624 10702938 -74992816 - THE1C LTR MaLR -62 313 1 1570 75 28 0 chr15 10702938 10703151 -74992603 + L1PB1 LINE L1 5562 5780 -371 216 0 0 0 chr15 10703151 10703175 -74992579 + (TG)n Simple_repeat Simple_repeat 2 25 0 365 269 5 10 chr15 10703212 10703426 -74992328 + (CATATA)n Simple_repeat Simple_repeat 1 212 0 2601 82 79 0 chr15 10703426 10703768 -74991986 + L1PB1 LINE L1 5782 6150 -1 440 154 174 34 chr15 10703770 10703919 -74991835 + Charlie5 DNA MER1_type 2391 2560 -52 1916 108 68 20 chr15 10704260 10704555 -74991199 - AluSx SINE Alu -3 309 1 2111 99 0 7 chr15 10704718 10705002 -74990752 - AluSg SINE Alu -9 301 20 304 312 0 13 chr15 10705209 10705286 -74990468 - MER5A DNA MER1_type 0 189 114 * 418 299 26 8 chr15 10705220 10705337 -74990417 + MER5B DNA MER1_type 11 129 -49 1729 124 46 11 chr15 10705979 10706261 -74989493 - L1MB2 LINE L1 -5 6166 5875 266 310 150 9 chr15 10706441 10706554 -74989200 + L2 LINE L2 3134 3262 -10 1790 141 3 33 chr15 10706576 10706875 -74988879 - AluSx SINE Alu -22 290 1 1832 123 24 24 chr15 10708234 10708526 -74987228 - AluJo SINE Alu -11 301 10 1026 241 28 0 chr15 10709270 10709482 -74986272 - MER58A DNA MER1_type -2 222 5 2521 125 24 12 chr15 10709515 10709949 -74985805 + MER1A DNA MER1_type 49 528 -1 1077 86 14 0 chr15 10710044 10710184 -74985570 + AluSg/x SINE Alu 156 297 -15 1126 195 47 9 chr15 10710208 10710423 -74985331 - AluJb SINE Alu -89 223 1 23 78 0 0 chr15 10710673 10710724 -74985030 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr15 10711603 10711626 -74984128 + AT_rich Low_complexity Low_complexity 1 23 0 259 312 168 39 chr15 10712332 10712460 -74983294 + MIR SINE MIR 7 149 -61 802 167 8 15 chr15 10712465 10712597 -74983157 + AluJo SINE Alu 6 136 -176 1964 136 21 0 chr15 10712606 10712886 -74982868 - AluSx SINE Alu -26 286 1 29 28 0 0 chr15 10712888 10712924 -74982830 + AT_rich Low_complexity Low_complexity 1 36 0 2219 64 0 4 chr15 10712924 10713215 -74982539 + AluY SINE Alu 21 310 0 180 300 33 0 chr15 10713224 10713284 -74982470 + MIR SINE MIR 178 239 -23 2161 183 140 78 chr15 10713481 10714082 -74981672 + MER69 DNA AcHobo 3 640 -1886 937 148 74 5 chr15 10714099 10714288 -74981466 + MER69 DNA AcHobo 1867 2068 -458 2521 73 0 0 chr15 10716604 10716905 -74978849 + AluY SINE Alu 1 301 -10 284 106 64 0 chr15 10717333 10717380 -74978374 - MLT1C LTR MaLR -417 50 1 2342 88 10 0 chr15 10718076 10718381 -74977373 - AluY SINE Alu -3 308 1 1948 164 3 0 chr15 10718924 10719222 -74976532 - AluJb SINE Alu -13 299 1 509 93 0 157 chr15 10719543 10719600 -74976154 + LTR62 LTR ERVK 3 37 -682 2348 84 0 3 chr15 10719600 10719899 -74975855 + AluY SINE Alu 1 298 -13 509 93 0 157 chr15 10719899 10719949 -74975805 + LTR62 LTR ERVK 37 93 -626 2538 185 20 31 chr15 10719987 10720724 -74975030 - L1M2 LINE L1 -520 5792 5073 428 190 99 0 chr15 10720723 10720844 -74974910 - L1M2 LINE L1 -1617 4529 4397 * 2402 184 70 13 chr15 10720857 10721454 -74974300 + L1M2 LINE L1 3796 4426 -1720 1078 266 54 61 chr15 10721581 10722140 -74973614 + LTR67 LTR ERVL 3 557 0 239 273 11 11 chr15 10722329 10722386 -74973368 + (TA)n Simple_repeat Simple_repeat 1 60 -28 2050 148 33 0 chr15 10722386 10722723 -74973031 - MER7A DNA MER2_type 0 346 1 239 273 11 11 chr15 10722723 10722753 -74973001 + (TA)n Simple_repeat Simple_repeat 59 88 0 1483 233 0 0 chr15 10722753 10723028 -74972726 + AluSx SINE Alu 1 275 -37 2048 75 0 4 chr15 10723031 10723284 -74972470 - AluSq SINE Alu -17 296 45 210 37 0 0 chr15 10723306 10723333 -74972421 + (TA)n Simple_repeat Simple_repeat 1 27 0 333 292 124 27 chr15 10723822 10724007 -74971747 + L2 LINE L2 2550 2752 -562 2207 100 3 7 chr15 10724088 10724388 -74971366 - AluSc SINE Alu -10 299 1 388 169 12 0 chr15 10724396 10724479 -74971275 - L1MC4 LINE L1 -2 8040 7957 214 156 0 0 chr15 10724523 10724555 -74971199 + MIR SINE MIR 218 249 -13 248 316 43 8 chr15 10724610 10724727 -74971027 + HAL1 LINE L1 3 123 -2384 355 292 211 34 chr15 10724935 10725353 -74970401 - L2 LINE L2 -4 3309 2818 549 224 71 41 chr15 10725379 10725549 -74970205 - MER5B DNA MER1_type 0 178 4 324 284 34 54 chr15 10725556 10725704 -74970050 + HAL1 LINE L1 473 617 -1890 995 153 12 0 chr15 10726012 10726182 -74969572 + MER2 DNA MER2_type 22 193 -152 29 60 0 0 chr15 10726186 10726236 -74969518 + AT_rich Low_complexity Low_complexity 1 50 0 2452 79 0 0 chr15 10726594 10726898 -74968856 - AluSg1 SINE Alu -5 304 1 27 29 0 0 chr15 10726898 10726932 -74968822 + AT_rich Low_complexity Low_complexity 1 34 0 2137 117 3 3 chr15 10727177 10727476 -74968278 - AluSx SINE Alu -13 299 1 2114 89 20 14 chr15 10727531 10727823 -74967931 - AluY SINE Alu -17 294 1 1052 159 45 0 chr15 10727824 10728044 -74967710 + L1MA4 LINE L1 6060 6289 -11 958 184 32 5 chr15 10728049 10728266 -74967488 + L1MB7 LINE L1 5962 6184 0 4337 115 49 7 chr15 10728279 10729009 -74966745 + L1MA9 LINE L1 5552 6312 0 1827 170 6 6 chr15 10729227 10729538 -74966216 + AluJo SINE Alu 1 311 -1 246 183 33 17 chr15 10729538 10729598 -74966156 + GA-rich Low_complexity Low_complexity 1 61 0 1421 55 6 0 chr15 10729897 10730079 -74965675 + L1PA6 LINE L1 5972 6154 0 8360 52 0 14 chr15 10731445 10733310 -74962444 + L1PA6 LINE L1 4291 6144 -10 702 166 72 29 chr15 10734835 10735039 -74960715 - L1MC/D LINE L1 -861 5444 5302 322 319 69 44 chr15 10735117 10735434 -74960320 - L1MC/D LINE L1 -941 5205 4881 2313 183 50 34 chr15 10735909 10736390 -74959364 + L1ME2 LINE L1 5558 6052 -112 723 239 68 0 chr15 10736390 10736566 -74959188 + MER5A DNA MER1_type 1 188 -1 2313 183 50 34 chr15 10736566 10736679 -74959075 + L1ME2 LINE L1 6052 6162 -2 1931 155 0 34 chr15 10736801 10737123 -74958631 + AluSx SINE Alu 2 312 0 316 328 21 47 chr15 10737540 10737732 -74958022 + L2 LINE L2 2897 3083 -189 207 348 72 0 chr15 10738553 10738622 -74957132 + MIR3 SINE MIR 108 181 -27 22 35 0 0 chr15 10738984 10739013 -74956741 + AT_rich Low_complexity Low_complexity 1 29 0 197 303 74 126 chr15 10739167 10739398 -74956356 + L2 LINE L2 3045 3263 -9 1958 154 0 26 chr15 10739499 10739810 -74955944 - AluJo SINE Alu -9 303 1 182 302 31 52 chr15 10739931 10740027 -74955727 + MIR SINE MIR 52 145 -117 2709 42 0 0 chr15 10740035 10740344 -74955410 + AluY SINE Alu 3 311 0 592 308 53 19 chr15 10740829 10741092 -74954662 + L2 LINE L2 2358 2629 -685 1257 102 6 0 chr15 10741272 10741449 -74954305 + AluY SINE Alu 134 311 0 258 233 14 27 chr15 10741597 10741670 -74954084 + MIR3 SINE MIR 135 206 -2 275 120 0 80 chr15 10741687 10741737 -74954017 - L2 LINE L2 -17 3255 3210 2489 86 0 0 chr15 10742014 10742318 -74953436 + AluSx SINE Alu 1 304 -8 636 311 40 4 chr15 10743445 10743670 -74952084 + MIR SINE MIR 28 260 -2 25 0 0 0 chr15 10744321 10744346 -74951408 + AT_rich Low_complexity Low_complexity 1 25 0 2457 91 0 0 chr15 10744368 10744675 -74951079 + AluSx SINE Alu 1 307 -5 669 305 40 14 chr15 10744749 10744972 -74950782 + MIR SINE MIR 25 253 -9 1633 193 23 3 chr15 10745063 10745363 -74950391 + AluJb SINE Alu 1 306 -6 225 228 18 18 chr15 10745818 10745875 -74949879 - MIR3 SINE MIR -32 176 120 1021 160 27 18 chr15 10745880 10746105 -74949649 - L1MB3 LINE L1 -363 5820 5594 1858 142 19 19 chr15 10746107 10746432 -74949322 + L1MB3 LINE L1 5852 6176 -7 245 337 51 10 chr15 10746495 10746593 -74949161 - MIR3 SINE MIR -98 110 9 853 161 37 0 chr15 10747605 10747766 -74947988 - L1MB3 LINE L1 -8 6175 6009 1123 172 103 11 chr15 10748033 10748295 -74947459 - L1MB3 LINE L1 -188 5995 5710 2027 95 26 43 chr15 10749366 10749671 -74946083 + AluSx SINE Alu 1 300 -12 419 291 122 24 chr15 10751573 10751791 -74943963 + MIR SINE MIR 20 256 -6 2430 80 3 0 chr15 10752408 10752708 -74943046 - AluSp SINE Alu -12 301 1 513 241 91 26 chr15 10753392 10753624 -74942130 + L1MEc LINE L1 1745 1991 -4405 336 327 19 0 chr15 10753928 10754087 -74941667 + L1 LINE L1 4891 5052 -1094 1190 266 95 8 chr15 10754130 10754627 -74941127 + L1MC4 LINE L1 6454 6993 -1049 5682 135 77 9 chr15 10754667 10755932 -74939822 + L1PBa LINE L1 1 1500 -5363 2025 83 20 4 chr15 10755928 10756279 -74939475 + L1P5 LINE L1 5210 5565 -586 * 1500 105 43 23 chr15 10756283 10756541 -74939213 - THE1C LTR MaLR -2 373 111 2193 97 7 0 chr15 10757450 10757729 -74938025 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 10757732 10757771 -74937983 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 571 241 142 0 chr15 10757771 10757983 -74937771 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 10758397 10758431 -74937323 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 10758430 10758487 -74937267 + (GA)n Simple_repeat Simple_repeat 2 58 0 1972 152 0 0 chr15 10758582 10758865 -74936889 + AluSx SINE Alu 1 283 -29 1594 180 58 4 chr15 10758998 10759276 -74936478 + AluJo SINE Alu 1 293 -19 496 309 100 18 chr15 10759654 10759874 -74935880 + MIR SINE MIR 7 244 -18 232 352 14 0 chr15 10759892 10759963 -74935791 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 10760370 10760460 -74935294 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 10760781 10760803 -74934951 + AT_rich Low_complexity Low_complexity 1 22 0 308 328 115 10 chr15 10760940 10761245 -74934509 + L1M4 LINE L1 3964 4300 -1846 282 246 70 25 chr15 10761306 10761505 -74934249 + L1M4 LINE L1 4398 4605 -1541 235 322 41 0 chr15 10761578 10761724 -74934030 + L1M4 LINE L1 4642 4793 -1353 2540 58 0 0 chr15 10761755 10762064 -74933690 + AluY SINE Alu 1 309 -2 2535 40 3 0 chr15 10762158 10762454 -74933300 + AluY SINE Alu 1 297 -14 1742 179 28 17 chr15 10762459 10762816 -74932938 + MLT1A2 LTR MaLR 3 363 -11 285 98 0 0 chr15 10762838 10762879 -74932875 + (A)n Simple_repeat Simple_repeat 1 41 0 2590 55 0 0 chr15 10763079 10763387 -74932367 + AluY SINE Alu 1 308 -3 249 215 35 62 chr15 10763388 10763532 -74932222 + L1M4 LINE L1 5152 5291 -855 2136 103 7 3 chr15 10763763 10764045 -74931709 - AluSq SINE Alu -30 283 1 377 310 103 13 chr15 10764460 10764615 -74931139 + MIR3 SINE MIR 29 197 -11 1541 224 11 32 chr15 10764621 10764782 -74930972 + MLT1A2 LTR MaLR 1 164 -210 570 118 0 0 chr15 10764782 10764875 -74930879 - L1MB2 LINE L1 -1 6170 6078 1541 224 11 32 chr15 10764875 10765084 -74930670 + MLT1A2 LTR MaLR 164 363 -11 2336 93 0 0 chr15 10765453 10765744 -74930010 - AluSg SINE Alu -19 291 1 344 212 30 20 chr15 10765962 10766061 -74929693 - MER103 DNA DNA -57 109 10 2458 80 0 3 chr15 10767344 10767655 -74928099 - AluY SINE Alu -1 310 1 2080 51 16 0 chr15 10767788 10768042 -74927712 - AluY SINE Alu -53 258 1 777 186 0 0 chr15 10768539 10768668 -74927086 + FLAM_C SINE Alu 1 129 -4 1908 131 50 3 chr15 10768723 10769005 -74926749 - AluSx SINE Alu -4 308 14 3073 153 81 10 chr15 10769009 10769617 -74926137 - L1MB2 LINE L1 -40 6131 5481 195 42 0 0 chr15 10769780 10769804 -74925950 + (A)n Simple_repeat Simple_repeat 1 24 0 338 196 157 39 chr15 10770024 10770126 -74925628 - L2 LINE L2 -2 3311 3198 2447 73 0 0 chr15 10770297 10770598 -74925156 + AluY SINE Alu 1 301 -10 1879 169 3 7 chr15 10771080 10771381 -74924373 - AluJo SINE Alu -12 300 1 189 317 5 156 chr15 10771382 10771581 -74924173 + L2 LINE L2 2588 2756 -558 264 200 77 0 chr15 10771602 10771667 -74924087 + L1MEc LINE L1 27 96 -6300 1445 205 20 11 chr15 10771723 10772079 -74923675 + L1MEc LINE L1 569 927 -5469 390 272 126 58 chr15 10772551 10772812 -74922942 + L3b LINE CR1 1268 1546 -37 23 33 0 0 chr15 10773042 10773072 -74922682 + AT_rich Low_complexity Low_complexity 1 30 0 2362 60 7 0 chr15 10773076 10773360 -74922394 - AluY SINE Alu -25 286 1 2699 239 25 16 chr15 10773689 10774372 -74921382 - L2 LINE L2 -1272 2042 1354 2513 58 0 0 chr15 10774866 10775161 -74920593 - AluY SINE Alu -16 295 1 898 121 0 8 chr15 10775644 10775776 -74919978 + FLAM_C SINE Alu 3 133 0 2212 108 0 14 chr15 10776214 10776510 -74919244 + AluSx SINE Alu 1 292 -20 2003 102 63 3 chr15 10776586 10776870 -74918884 - AluY SINE Alu -10 301 1 1569 162 47 7 chr15 10776882 10777160 -74918594 - AluJo SINE Alu -23 289 1 2526 84 0 0 chr15 10777410 10777719 -74918035 - AluSq SINE Alu -4 309 1 336 102 0 0 chr15 10778245 10778294 -74917460 + (CA)n Simple_repeat Simple_repeat 2 50 0 478 281 34 0 chr15 10778848 10778994 -74916760 + Charlie2 DNA MER1_type 6 156 -2706 2094 241 105 12 chr15 10779073 10779476 -74916278 + Charlie2 DNA MER1_type 1851 2215 -647 2162 114 3 3 chr15 10779476 10779774 -74915980 + AluSx SINE Alu 1 298 -14 2094 241 105 12 chr15 10779774 10780036 -74915718 + Charlie2 DNA MER1_type 2215 2451 -411 2195 116 3 3 chr15 10780036 10780338 -74915416 - AluSc SINE Alu -7 302 1 2094 241 105 12 chr15 10780338 10780414 -74915340 + Charlie2 DNA MER1_type 2451 2519 -343 1759 178 6 19 chr15 10780414 10780729 -74915025 + AluJo SINE Alu 1 311 -1 2094 241 105 12 chr15 10780729 10780900 -74914854 + Charlie2 DNA MER1_type 2519 2850 -12 376 300 18 0 chr15 10781718 10781828 -74913926 + MIR SINE MIR 2 113 -149 1712 154 7 11 chr15 10782050 10782336 -74913418 - AluJo SINE Alu -27 285 1 180 263 172 0 chr15 10782835 10782934 -74912820 - L3 LINE CR1 -10 1567 1452 2240 87 3 20 chr15 10783062 10783360 -74912394 + AluSq SINE Alu 1 293 -20 291 207 66 3 chr15 10783611 10783683 -74912071 + MIR SINE MIR 37 111 -97 253 184 35 23 chr15 10783715 10783808 -74911946 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 344 149 170 53 chr15 10784502 10784596 -74911158 - L2 LINE L2 0 3313 3209 403 278 94 87 chr15 10784677 10785121 -74910633 + L1M2 LINE L1 441 821 -6028 195 114 0 0 chr15 10785121 10785156 -74910598 + (CCG)n Simple_repeat Simple_repeat 2 36 0 403 278 94 87 chr15 10785156 10785376 -74910378 + L1M2 LINE L1 821 1038 -5811 195 42 0 0 chr15 10785423 10785447 -74910307 + (CGGGG)n Simple_repeat Simple_repeat 3 26 0 581 258 60 12 chr15 10785976 10786143 -74909611 - MIR SINE MIR -73 189 15 546 322 16 81 chr15 10786335 10786658 -74909096 - L2 LINE L2 -24 3248 2947 598 262 67 0 chr15 10786702 10786866 -74908888 - MIR SINE MIR -10 252 78 1324 189 102 0 chr15 10786868 10787133 -74908621 + AluJb SINE Alu 1 292 -20 263 182 0 0 chr15 10787135 10787179 -74908575 - MSTC LTR MaLR -384 44 1 1030 191 48 9 chr15 10787293 10787503 -74908251 - MER20 DNA MER1_type 0 219 2 1019 261 42 8 chr15 10787883 10788121 -74907633 - MIR SINE MIR -8 254 9 2535 66 0 7 chr15 10788617 10788922 -74906832 - AluSp SINE Alu -9 304 2 694 155 218 0 chr15 10788968 10789110 -74906644 + MER5A DNA MER1_type 2 174 -15 266 259 206 33 chr15 10789568 10789869 -74905885 + L1MC5 LINE L1 7533 7885 -76 27 29 0 0 chr15 10789910 10789944 -74905810 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr15 10789985 10790011 -74905743 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr15 10790022 10790052 -74905702 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr15 10790411 10790443 -74905311 + (A)n Simple_repeat Simple_repeat 1 32 0 33 66 0 0 chr15 10792939 10793000 -74902754 + AT_rich Low_complexity Low_complexity 1 61 0 404 19 0 19 chr15 10794821 10794875 -74900879 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr15 10794930 10794961 -74900793 + AT_rich Low_complexity Low_complexity 1 31 0 757 138 0 9 chr15 10795904 10796020 -74899734 + AluJ SINE Alu 22 136 -176 2172 123 3 0 chr15 10797014 10797314 -74898440 + AluSq SINE Alu 1 301 -12 2270 109 7 0 chr15 10797973 10798276 -74897478 + AluSg SINE Alu 1 305 -5 22 0 0 0 chr15 10798992 10799014 -74896740 + AT_rich Low_complexity Low_complexity 1 22 0 875 199 23 0 chr15 10800119 10800290 -74895464 + AluJ SINE Alu 137 311 -1 404 128 13 0 chr15 10800322 10800400 -74895354 + GA-rich Low_complexity Low_complexity 4 82 0 2069 128 3 0 chr15 10800709 10801030 -74894724 + AluSx SINE Alu 1 322 0 1434 169 139 0 chr15 10801568 10801835 -74893919 + AluJb SINE Alu 1 304 -8 357 290 73 8 chr15 10801883 10802007 -74893747 + MIR3 SINE MIR 67 198 -10 355 339 99 12 chr15 10803968 10804139 -74891615 + MIR SINE MIR 25 210 -52 2051 103 0 97 chr15 10804170 10804501 -74891253 - AluSx SINE Alu -12 300 2 426 151 0 0 chr15 10805464 10805537 -74890217 + (TG)n Simple_repeat Simple_repeat 2 74 0 237 211 0 0 chr15 10805537 10805589 -74890165 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 233 200 0 0 chr15 10805901 10805946 -74889808 + L1MD3 LINE L1 7209 7253 -742 376 213 111 0 chr15 10805959 10806067 -74889687 + MLT1F1 LTR MaLR 6 125 -442 2184 183 70 41 chr15 10806067 10806634 -74889120 + L1MD3 LINE L1 7404 7987 -8 2253 105 3 0 chr15 10806743 10807037 -74888717 - AluSp SINE Alu -18 295 1 965 202 58 123 chr15 10807474 10807920 -74887834 - LTR40c LTR ERVL -5 460 44 214 306 65 0 chr15 10807964 10808026 -74887728 + L2 LINE L2 3169 3234 -38 2602 48 0 10 chr15 10808430 10808744 -74887010 - AluY SINE Alu 0 311 1 2381 76 0 10 chr15 10808990 10809292 -74886462 - AluSc SINE Alu -10 299 1 484 330 48 22 chr15 10810623 10810850 -74884904 + MIR SINE MIR 1 233 -29 205 305 263 34 chr15 10811073 10811430 -74884324 - L3b LINE CR1 -9 1574 1136 309 267 67 7 chr15 10812078 10812213 -74883541 + HAL1 LINE L1 2 144 -2363 2086 93 11 4 chr15 10812259 10812568 -74883186 + AluSx SINE Alu 1 311 0 1158 134 0 0 chr15 10812568 10812740 -74883014 + AluSg/x SINE Alu 132 303 -7 851 125 0 0 chr15 10813707 10813835 -74881919 + L1MA2 LINE L1 6172 6299 -5 2259 78 0 13 chr15 10814440 10814746 -74881008 + AluY SINE Alu 1 302 -9 247 198 83 42 chr15 10816180 10816276 -74879478 - L1ME3A LINE L1 -223 5947 5848 284 239 178 68 chr15 10816279 10816394 -74879360 - L1ME3A LINE L1 -393 5769 5668 3656 121 10 2 chr15 10816394 10816915 -74878839 + MER1A DNA MER1_type 3 527 0 284 239 178 68 chr15 10816915 10816991 -74878763 - L1ME3A LINE L1 -494 5668 5564 33 0 0 0 chr15 10817280 10817313 -74878441 + AT_rich Low_complexity Low_complexity 1 33 0 1935 149 0 16 chr15 10817315 10817624 -74878130 + AluJo SINE Alu 1 304 -8 1103 136 37 61 chr15 10817665 10817879 -74877875 - MER2 DNA MER2_type -135 210 2 441 130 0 0 chr15 10817897 10817966 -74877788 + L1P LINE L1 5105 5173 -973 7273 148 16 28 chr15 10818080 10819381 -74876373 + L1P LINE L1 41 1326 -4820 294 218 157 32 chr15 10819417 10819806 -74875948 + L1ME LINE L1 5016 5460 -704 2525 240 115 121 chr15 10819808 10820678 -74875076 + L2 LINE L2 778 1777 -1537 757 177 21 28 chr15 10820678 10820819 -74874935 + FLAM_C SINE Alu 2 141 -2 2525 240 115 121 chr15 10820819 10821359 -74874395 + L2 LINE L2 1777 2319 -995 644 251 153 0 chr15 10821359 10821582 -74874172 + LTR33 LTR ERVL 1 257 -264 347 303 72 7 chr15 10821638 10821790 -74873964 + LTR33 LTR ERVL 355 516 -5 1609 242 110 50 chr15 10821839 10822711 -74873043 + L2 LINE L2 2385 3308 -5 2416 86 0 3 chr15 10823353 10823655 -74872099 - AluSq SINE Alu -12 301 1 1748 188 53 35 chr15 10824324 10824701 -74871053 - L1MD2 LINE L1 -19 6340 5957 1250 202 61 69 chr15 10826639 10827175 -74868579 + L1MC5 LINE L1 6261 6358 -1 335 261 78 20 chr15 10827331 10827484 -74868270 - L1ME4a LINE L1 -14 6107 5946 350 262 158 30 chr15 10827569 10827733 -74868021 - L1MC4 LINE L1 -314 7728 7544 2397 85 0 0 chr15 10828363 10828658 -74867096 + AluY SINE Alu 1 295 -16 1235 154 0 0 chr15 10829742 10830007 -74865747 - MLT1C-int LTR MaLR -1172 199 7 1926 200 90 18 chr15 10830007 10830442 -74865312 - MLT1C LTR MaLR -1 466 1 1813 167 3 7 chr15 10830472 10830771 -74864983 + AluJo SINE Alu 1 298 -14 372 204 70 56 chr15 10830780 10830818 -74864936 + L1M4c LINE L1 1318 1354 -5030 2283 106 3 0 chr15 10830818 10831121 -74864633 - AluY SINE Alu -7 304 1 372 204 70 56 chr15 10831121 10831224 -74864530 + L1M4c LINE L1 1354 1461 -4923 194 174 22 0 chr15 10831263 10831309 -74864445 + (CA)n Simple_repeat Simple_repeat 2 48 0 869 271 42 78 chr15 10831316 10831799 -74863955 + L1M4c LINE L1 1460 2077 -4486 1172 211 38 51 chr15 10831807 10832038 -74863716 + L1M4c LINE L1 2437 2662 -3720 1425 160 116 29 chr15 10832038 10832313 -74863441 + AluJo SINE Alu 1 299 -13 1172 211 38 51 chr15 10832313 10832474 -74863280 + L1M4c LINE L1 2662 2824 -3558 21 0 0 0 chr15 10832654 10832675 -74863079 + AT_rich Low_complexity Low_complexity 1 21 0 981 175 0 0 chr15 10833378 10833532 -74862222 + FRAM SINE Alu 1 154 -22 2363 107 0 0 chr15 10835386 10835694 -74860060 - AluSx SINE Alu -4 308 1 300 299 116 0 chr15 10835862 10836009 -74859745 - L2 LINE L2 -3 3310 3147 2229 115 0 16 chr15 10836413 10836726 -74859028 + AluSq SINE Alu 1 308 -5 2511 62 3 0 chr15 10837531 10837835 -74857919 + AluY SINE Alu 1 305 -6 1492 62 6 0 chr15 10838314 10838490 -74857264 + AluSp SINE Alu 1 177 -136 607 115 0 0 chr15 10838490 10838577 -74857177 + AluSp SINE Alu 220 306 -7 1623 166 17 34 chr15 10839172 10839468 -74856286 + AluJb SINE Alu 7 297 -15 2184 130 10 0 chr15 10839798 10840106 -74855648 - AluSx SINE Alu -1 311 1 6363 121 127 13 chr15 10840156 10840589 -74855165 + Tigger3b DNA MER2_type 2 384 -2644 6098 68 8 115 chr15 10840589 10841514 -74854240 - LTR12 LTR ERV1 0 826 1 6363 121 127 13 chr15 10841514 10841852 -74853902 + Tigger3b DNA MER2_type 384 682 -2346 197 33 33 0 chr15 10841852 10841882 -74853872 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6363 121 127 13 chr15 10841882 10842212 -74853542 + Tigger3b DNA MER2_type 682 1230 -1 2512 73 0 0 chr15 10842357 10842657 -74853097 + AluY SINE Alu 1 300 -11 229 183 0 8 chr15 10843510 10843600 -74852154 - Alu SINE Alu 0 299 134 512 88 0 15 chr15 10843708 10843804 -74851950 + AluSg/x SINE Alu 214 308 0 2214 81 24 3 chr15 10844825 10845121 -74850633 + AluSg SINE Alu 1 302 -8 498 226 53 111 chr15 10846016 10846259 -74849495 - L2 LINE L2 0 3313 3085 648 139 115 25 chr15 10846287 10846409 -74849345 + FLAM_C SINE Alu 1 133 0 2477 72 0 31 chr15 10846488 10846807 -74848947 + AluSg SINE Alu 1 309 -1 1930 116 47 0 chr15 10846819 10847096 -74848658 + AluSx SINE Alu 1 290 -22 519 233 9 9 chr15 10847173 10847289 -74848465 - LTR67 LTR ERVL -10 547 432 937 142 116 5 chr15 10847447 10847637 -74848117 + L1MC4 LINE L1 7692 7902 -140 216 67 0 0 chr15 10847673 10847703 -74848051 + (TG)n Simple_repeat Simple_repeat 1 30 0 371 179 60 12 chr15 10848149 10848233 -74847521 + L1ME4a LINE L1 5976 6063 -58 314 277 44 66 chr15 10848787 10848924 -74846830 + L3 LINE CR1 1298 1431 -146 2855 222 52 53 chr15 10848946 10849164 -74846590 + L1M4 LINE L1 26 243 -6299 2152 100 0 45 chr15 10849164 10849473 -74846281 + AluSx SINE Alu 14 308 -4 2855 222 52 53 chr15 10849473 10850077 -74845677 + L1M4 LINE L1 243 847 -5695 1630 201 6 10 chr15 10850202 10850515 -74845239 + AluJb SINE Alu 1 312 0 497 279 25 38 chr15 10850589 10850747 -74845007 - MIR SINE MIR -75 187 32 249 305 0 0 chr15 10851938 10851997 -74843757 + MER5A DNA MER1_type 9 67 -122 3238 204 31 51 chr15 10852012 10852431 -74843323 + L1PA11 LINE L1 6 403 -7178 2584 51 0 6 chr15 10852431 10852743 -74843011 - AluY SINE Alu 0 311 2 3238 204 31 51 chr15 10852743 10853106 -74842648 + L1PA11 LINE L1 403 772 -6809 203 0 0 36 chr15 10853106 10853134 -74842620 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 778 157 0 0 chr15 10853136 10853244 -74842510 - AluSg/x SINE Alu -30 282 175 961 158 67 6 chr15 10853351 10853392 -74842362 - AluJb SINE Alu -137 175 138 255 31 0 0 chr15 10853392 10853424 -74842330 + (TG)n Simple_repeat Simple_repeat 2 33 0 961 158 67 6 chr15 10853424 10853547 -74842207 - AluJb SINE Alu -174 138 1 24683 165 16 22 chr15 10853547 10855260 -74840494 + L1PA11 LINE L1 766 2488 -5124 2254 120 0 0 chr15 10855260 10855561 -74840193 - AluSx SINE Alu -11 301 1 24683 165 16 22 chr15 10855561 10858392 -74837362 + L1PA11 LINE L1 2488 5334 -2278 2266 123 0 0 chr15 10858392 10858694 -74837060 + AluSx SINE Alu 1 302 -10 234 0 0 0 chr15 10858694 10858720 -74837034 + (TA)n Simple_repeat Simple_repeat 2 27 0 24683 165 16 22 chr15 10858720 10860237 -74835517 + L1PA11 LINE L1 5332 7609 -3 2409 86 3 0 chr15 10860287 10860590 -74835164 + AluSp SINE Alu 1 304 -9 1936 137 3 23 chr15 10860593 10860892 -74834862 + AluSx SINE Alu 1 293 -19 2315 81 0 3 chr15 10860896 10861222 -74834532 + AluY SINE Alu 1 325 0 207 307 0 40 chr15 10861225 10861300 -74834454 + MER5A DNA MER1_type 111 182 -7 569 156 0 33 chr15 10861304 10861394 -74834360 - AluS SINE Alu -225 88 2 356 325 69 38 chr15 10861581 10861741 -74834013 - MIR3 SINE MIR -23 185 21 401 303 23 0 chr15 10861831 10861963 -74833791 + MER103 DNA DNA 31 165 -1 1247 158 0 87 chr15 10862135 10862388 -74833366 + AluJo SINE Alu 24 254 -58 2121 116 0 41 chr15 10862504 10862823 -74832931 - AluSc SINE Alu -3 306 1 578 259 56 0 chr15 10862866 10863028 -74832726 - MIR SINE MIR -16 246 76 840 189 7 0 chr15 10863031 10863184 -74832570 + FRAM SINE Alu 1 153 -23 1930 159 41 36 chr15 10863332 10863696 -74832058 - MLT2D LTR ERVL -48 366 1 2355 139 118 44 chr15 10863700 10863937 -74831817 + LTR54 LTR ERV1 1 219 -291 405 0 0 0 chr15 10863937 10863982 -74831772 + (CA)n Simple_repeat Simple_repeat 2 46 0 2355 139 118 44 chr15 10863982 10864219 -74831535 + LTR54 LTR ERV1 219 510 0 2299 116 0 10 chr15 10864273 10864584 -74831170 - AluSx SINE Alu -4 308 1 318 309 129 72 chr15 10864940 10865357 -74830397 + L2 LINE L2 2817 3257 -15 181 247 86 65 chr15 10865710 10865803 -74829951 - L2 LINE L2 -908 2406 2312 1933 118 26 4 chr15 10865983 10866255 -74829499 + AluSq SINE Alu 3 280 -33 1403 43 0 0 chr15 10866255 10866418 -74829336 + AluY SINE Alu 134 296 -15 296 247 62 102 chr15 10866708 10867080 -74828674 + HAL1b LINE L1 1195 6121 0 2509 66 0 0 chr15 10867662 10867965 -74827789 + AluY SINE Alu 1 303 -8 1801 152 3 36 chr15 10871914 10872217 -74823537 + AluJo SINE Alu 2 294 -18 1631 185 63 79 chr15 10873395 10873508 -74822246 - L1MC4 LINE L1 -7 8035 7922 195 42 0 0 chr15 10873508 10873532 -74822222 + (TG)n Simple_repeat Simple_repeat 1 24 0 1631 185 63 79 chr15 10873532 10873614 -74822140 - L1MC4 LINE L1 -120 7922 7840 1628 163 92 3 chr15 10873614 10873897 -74821857 - AluJb SINE Alu -4 308 1 1631 185 63 79 chr15 10873897 10874193 -74821561 - L1MC4 LINE L1 -202 7840 7551 2592 40 0 0 chr15 10874204 10874501 -74821253 - AluY SINE Alu -14 297 1 1733 97 0 0 chr15 10874530 10874747 -74821007 + AluSg SINE Alu 1 217 -93 729 159 0 0 chr15 10874747 10874860 -74820894 + AluSc SINE Alu 186 298 -11 641 184 66 33 chr15 10874869 10875021 -74820733 - L1MC4a LINE L1 -364 7444 7288 724 248 78 36 chr15 10875045 10875352 -74820402 - L1MC4a LINE L1 -1429 6379 6060 2060 103 67 36 chr15 10875352 10875711 -74820043 - THE1C LTR MaLR 0 375 6 253 250 125 8 chr15 10875786 10875906 -74819848 - HAL1 LINE L1 -131 2376 2243 1758 154 44 14 chr15 10876674 10876967 -74818787 - AluJb SINE Alu -10 302 1 404 143 63 0 chr15 10877456 10877519 -74818235 + AluSg SINE Alu 227 293 -19 2007 98 11 21 chr15 10877528 10877851 -74817903 - AluY SINE Alu 0 320 1 275 284 0 12 chr15 10877852 10877933 -74817821 - L1ME4a LINE L1 -88 6033 5954 2502 37 0 47 chr15 10877935 10878256 -74817498 - AluY SINE Alu -5 306 1 2483 93 0 0 chr15 10878408 10878719 -74817035 - AluSp SINE Alu -2 311 1 2339 122 0 0 chr15 10878885 10879196 -74816558 - AluSx SINE Alu -1 311 1 2021 195 69 25 chr15 10879264 10879711 -74816043 - MLT1C LTR MaLR 0 467 1 2176 91 0 39 chr15 10879795 10880104 -74815650 + AluSc SINE Alu 1 297 -12 2003 154 12 20 chr15 10880105 10880448 -74815306 - THE1C LTR MaLR -35 340 1 191 272 250 0 chr15 10880511 10880603 -74815151 - L2 LINE L2 0 3313 3199 268 206 192 0 chr15 10883397 10883470 -74812284 + MIR SINE MIR 70 156 -106 845 184 75 9 chr15 10883493 10883751 -74812003 + L1MA9 LINE L1 5908 6280 -32 25 0 0 0 chr15 10883751 10883776 -74811978 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 10884533 10884559 -74811195 + AT_rich Low_complexity Low_complexity 1 26 0 2310 100 7 0 chr15 10884617 10884916 -74810838 + AluY SINE Alu 1 301 -10 2105 106 0 3 chr15 10885361 10885644 -74810110 + AluSx SINE Alu 14 295 -17 45 0 0 0 chr15 10885644 10885689 -74810065 + AT_rich Low_complexity Low_complexity 1 45 0 226 246 49 16 chr15 10885889 10885950 -74809804 - MIR3 SINE MIR -31 177 115 262 244 171 12 chr15 10885954 10886036 -74809718 - L2 LINE L2 -2 3270 3176 239 229 0 0 chr15 10886041 10886089 -74809665 - MIR SINE MIR -103 105 58 426 114 43 29 chr15 10886417 10886487 -74809267 - L1PA14 LINE L1 -4 6157 6087 972 210 0 28 chr15 10886607 10886821 -74808933 - AluSc SINE Alu -19 290 83 1742 104 0 0 chr15 10886927 10887149 -74808605 - AluSx SINE Alu -52 260 39 485 33 33 0 chr15 10887149 10887210 -74808544 - MER75B DNA T2_type -130 113 51 1157 120 0 0 chr15 10888349 10888507 -74807247 - AluSg SINE Alu -152 158 1 1629 163 0 51 chr15 10888594 10888888 -74806866 + AluJb SINE Alu 1 279 -33 4625 159 48 14 chr15 10888908 10889831 -74805923 + L1PB4 LINE L1 5159 6129 -27 1007 111 0 20 chr15 10889832 10889985 -74805769 + AluSg/x SINE Alu 155 304 -6 616 113 0 0 chr15 10890404 10890484 -74805270 + AluS SINE Alu 1 80 -233 235 226 0 0 chr15 10892244 10892297 -74803457 - LTR33 LTR ERVL -2 519 467 442 181 52 116 chr15 10892391 10892509 -74803245 - LTR33 LTR ERVL -376 145 38 2244 101 0 14 chr15 10892509 10892806 -74802948 + AluSc SINE Alu 1 293 -16 442 181 52 116 chr15 10892806 10892842 -74802912 - LTR33 LTR ERVL -483 38 1 23 0 0 0 chr15 10892851 10892874 -74802880 + AT_rich Low_complexity Low_complexity 1 23 0 2085 98 3 73 chr15 10893273 10893600 -74802154 + AluSx SINE Alu 1 304 -8 2275 103 0 0 chr15 10894097 10894387 -74801367 + AluSx SINE Alu 1 290 -22 2426 91 0 3 chr15 10894398 10894706 -74801048 + AluSq SINE Alu 1 307 -6 1382 265 75 16 chr15 10894706 10895159 -74800595 + L1MC4a LINE L1 5434 5913 -1895 27 96 0 0 chr15 10895222 10895305 -74800449 + AT_rich Low_complexity Low_complexity 1 83 0 201 74 0 0 chr15 10895335 10895362 -74800392 + (TA)n Simple_repeat Simple_repeat 1 27 0 1087 131 16 60 chr15 10895387 10895570 -74800184 - FAM SINE Alu 0 175 1 675 209 39 63 chr15 10895792 10895913 -74799841 - MER90 LTR ERV1 -13 562 447 2320 91 0 14 chr15 10895913 10896210 -74799544 - AluSg SINE Alu -17 293 1 675 209 39 63 chr15 10896210 10896294 -74799460 - MER90 LTR ERV1 -128 447 362 517 254 41 35 chr15 10896335 10896504 -74799250 - LTR65 LTR ERV1 -499 170 1 198 0 0 0 chr15 10896673 10896695 -74799059 + (TG)n Simple_repeat Simple_repeat 2 23 0 223 250 208 14 chr15 10896997 10897069 -74798685 + MIR3 SINE MIR 88 173 -35 1078 58 0 7 chr15 10897285 10897422 -74798332 - MER75 DNA T2_type 0 504 369 742 137 0 0 chr15 10897423 10897525 -74798229 + AluSp SINE Alu 2 103 -210 262 118 0 0 chr15 10897625 10897659 -74798095 - AluSx SINE Alu -48 253 220 1577 141 4 16 chr15 10897659 10897765 -74797989 - AluSx SINE Alu -73 239 133 2521 34 0 10 chr15 10897765 10898060 -74797694 - AluY SINE Alu -18 293 2 1577 141 4 16 chr15 10898060 10898195 -74797559 - AluSx SINE Alu -179 133 1 214 250 28 42 chr15 10898528 10898623 -74797131 - MIR SINE MIR -87 121 31 1332 215 83 3 chr15 10899137 10899439 -74796315 - L1ME1 LINE L1 -58 6108 5783 797 197 0 0 chr15 10899489 10899621 -74796133 - MER94 DNA DNA -2 132 1 203 303 40 13 chr15 10899782 10899858 -74795896 - MIR SINE MIR -114 148 71 487 320 13 13 chr15 10899918 10900068 -74795686 + MIR SINE MIR 2 151 -111 334 264 0 33 chr15 10900194 10900285 -74795469 + L1MC4 LINE L1 6616 6703 -1339 255 283 22 0 chr15 10900297 10900389 -74795365 - L1MC4 LINE L1 -1335 6707 6614 * 309 239 23 0 chr15 10900313 10900401 -74795353 + L1MC4 LINE L1 6614 6703 -1339 287 228 0 22 chr15 10900407 10900499 -74795255 + L1MC4 LINE L1 6614 6703 -1339 327 150 0 0 chr15 10900503 10900563 -74795191 + (TA)n Simple_repeat Simple_repeat 2 61 0 32 0 0 0 chr15 10900591 10900623 -74795131 + AT_rich Low_complexity Low_complexity 1 32 0 284 161 0 65 chr15 10900638 10900700 -74795054 - U5 snRNA snRNA -58 58 1 974 89 8 0 chr15 10901202 10901326 -74794428 - FLAM_C SINE Alu -8 125 1 327 271 162 19 chr15 10902249 10902459 -74793295 - L1ME4a LINE L1 -2 6119 5880 715 235 8 0 chr15 10902474 10902606 -74793148 + FLAM_A SINE Alu 1 133 0 2305 186 26 0 chr15 10902616 10903002 -74792752 + MSTD LTR MaLR 1 396 0 2513 70 3 0 chr15 10903329 10903631 -74792123 - AluY SINE Alu -8 303 1 1777 152 42 3 chr15 10904462 10904745 -74791009 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 10905359 10905718 -74790036 - L1MB7 LINE L1 -13 6171 5826 2218 98 0 10 chr15 10905718 10906015 -74789739 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 10906015 10906257 -74789497 - L1MB7 LINE L1 -358 5826 5581 566 87 0 0 chr15 10906262 10906331 -74789423 - AluSg/x SINE Alu -49 263 195 656 185 25 115 chr15 10906345 10906545 -74789209 - L1MB7 LINE L1 -609 5575 5394 1193 156 37 66 chr15 10906683 10906926 -74788828 + MER46A DNA MER2_type 1 236 0 402 21 0 0 chr15 10906947 10906994 -74788760 + (TG)n Simple_repeat Simple_repeat 2 48 0 734 172 8 37 chr15 10907007 10907141 -74788613 - FLAM_C SINE Alu -12 131 2 2154 59 7 11 chr15 10907272 10907545 -74788209 - AluY SINE Alu -39 272 1 1966 135 7 0 chr15 10907659 10907941 -74787813 - AluJb SINE Alu -28 284 1 3556 121 18 2 chr15 10908267 10908756 -74786998 - LOR1a LTR ERV1 0 497 1 655 101 0 0 chr15 10908759 10908848 -74786906 - LOR1a-int LTR ERV1 -2 8118 8030 * 1769 111 0 26 chr15 10908847 10908874 -74786880 - LOR1-int LTR ERV1 -2056 6064 6038 8515 111 25 38 chr15 10908874 10910168 -74785586 + MER52C LTR ERV1 1 1278 0 1769 111 0 26 chr15 10910168 10910411 -74785343 - LOR1-int LTR ERV1 -2082 6038 5801 * 7407 99 55 31 chr15 10910401 10910529 -74785225 - LOR1-int LTR ERV1 -2596 5524 5400 2180 136 0 0 chr15 10910529 10910837 -74784917 + AluSx SINE Alu 1 308 -4 7407 99 55 31 chr15 10910837 10910946 -74784808 - LOR1-int LTR ERV1 -2720 5400 5295 2114 149 0 0 chr15 10910946 10911248 -74784506 + AluSx SINE Alu 1 302 -10 7407 99 55 31 chr15 10911248 10911713 -74784041 - LOR1-int LTR ERV1 -2825 5295 4842 2039 99 28 0 chr15 10911713 10911996 -74783758 - AluSx SINE Alu -21 291 1 7407 99 55 31 chr15 10911996 10912500 -74783254 - LOR1-int LTR ERV1 -3278 4842 4288 2593 50 0 0 chr15 10912617 10912916 -74782838 - AluY SINE Alu -12 299 1 960 223 45 35 chr15 10913312 10913754 -74782000 + L1MC5 LINE L1 7244 7598 -363 1828 168 73 48 chr15 10913760 10913827 -74781927 - L1ME1 LINE L1 -192 5974 5910 306 0 0 0 chr15 10913827 10913861 -74781893 + (TA)n Simple_repeat Simple_repeat 2 35 0 1828 168 73 48 chr15 10913861 10914234 -74781520 - L1ME1 LINE L1 -256 5910 5523 416 194 173 68 chr15 10914250 10914338 -74781416 + L1MC5 LINE L1 7649 7726 -235 2467 68 0 23 chr15 10914338 10914646 -74781108 + AluY SINE Alu 1 301 -10 416 194 173 68 chr15 10914646 10914794 -74780960 + L1MC5 LINE L1 7726 7910 -51 2159 112 0 3 chr15 10914795 10915099 -74780655 + AluY SINE Alu 1 303 -8 2736 32 0 0 chr15 10915610 10915920 -74779834 + AluY SINE Alu 2 311 0 2021 143 0 3 chr15 10915925 10916218 -74779536 + AluSx SINE Alu 1 292 -20 2017 158 0 0 chr15 10916243 10916554 -74779200 + AluJb SINE Alu 1 311 -1 431 164 0 0 chr15 10916606 10916679 -74779075 - Alu SINE Alu -3 307 235 190 300 0 0 chr15 10917138 10917188 -74778566 - L2 LINE L2 -2 3270 3221 228 296 14 120 chr15 10917225 10917367 -74778387 - MER5A DNA MER1_type -28 161 35 761 228 81 129 chr15 10917765 10917945 -74777809 + HAL1 LINE L1 1 159 -2348 2063 102 11 0 chr15 10917945 10918228 -74777526 + AluSx SINE Alu 4 289 -23 761 228 81 129 chr15 10918228 10918381 -74777373 + HAL1 LINE L1 159 318 -2189 32706 87 9 8 chr15 10918392 10924516 -74771238 + L1PA6 LINE L1 11 6151 -3 629 277 204 10 chr15 10924529 10924681 -74771073 + HAL1 LINE L1 307 428 -2079 2247 125 0 0 chr15 10924681 10924984 -74770770 - AluSx SINE Alu -9 303 1 629 277 204 10 chr15 10924984 10925145 -74770609 + HAL1 LINE L1 428 681 -1826 480 81 0 0 chr15 10925150 10925224 -74770530 + (CA)n Simple_repeat Simple_repeat 2 75 0 321 226 108 10 chr15 10925271 10925373 -74770381 + L1ME1 LINE L1 6050 6161 -5 600 233 213 19 chr15 10925395 10925756 -74769998 + HAL1 LINE L1 995 1425 -1082 460 198 144 0 chr15 10925838 10925949 -74769805 + HAL1 LINE L1 1540 1666 -841 439 249 135 17 chr15 10925969 10926206 -74769548 + HAL1 LINE L1 1721 1985 -522 * 2382 142 106 2 chr15 10926203 10926389 -74769365 + L1MDa LINE L1 1822 1987 -4553 206 61 0 30 chr15 10926389 10926422 -74769332 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2382 142 106 2 chr15 10926422 10926755 -74768999 + L1MDa LINE L1 1987 2395 -4145 1913 143 0 17 chr15 10927208 10927508 -74768246 + AluSx SINE Alu 5 299 -13 2127 131 0 0 chr15 10928058 10928356 -74767398 + AluSq SINE Alu 1 298 -15 1795 167 13 26 chr15 10928488 10928799 -74766955 + AluJo SINE Alu 1 307 -5 2126 126 39 39 chr15 10928887 10929251 -74766503 - THE1B LTR MaLR 0 364 1 2196 168 75 23 chr15 10929424 10929942 -74765812 + LTR10A LTR ERV1 1 545 -64 4829 120 21 12 chr15 10929957 10930767 -74764987 + LTR10A-int LTR ERV1 3 819 -5830 * 15685 169 17 26 chr15 10930762 10936170 -74759584 + LTR10A-int LTR ERV1 1396 6646 -3 2086 175 95 12 chr15 10936173 10936676 -74759078 + LTR10A LTR ERV1 1 545 -64 341 281 60 90 chr15 10936848 10937109 -74758645 - MIR SINE MIR 0 262 8 1620 216 62 32 chr15 10937109 10937545 -74758209 + Charlie1b DNA MER1_type 5 459 -2302 2120 117 0 0 chr15 10937545 10937826 -74757928 + AluSc SINE Alu 13 293 -16 1620 216 62 32 chr15 10937826 10937893 -74757861 + Charlie1b DNA MER1_type 459 523 0 21 0 0 0 chr15 10937953 10937974 -74757780 + AT_rich Low_complexity Low_complexity 1 21 0 1994 92 67 11 chr15 10938917 10939200 -74756554 + AluSg SINE Alu 1 299 -11 1755 113 4 8 chr15 10939211 10939459 -74756295 + AluSx SINE Alu 52 298 -14 483 109 0 0 chr15 10939630 10939694 -74756060 + AluSq/x SINE Alu 88 151 -162 1889 124 34 0 chr15 10939695 10939962 -74755792 + AluSg SINE Alu 35 310 0 4731 113 38 30 chr15 10939962 10940785 -74754969 + L1PA15 LINE L1 5319 6147 -18 1821 169 0 16 chr15 10940786 10941093 -74754661 - AluJb SINE Alu -10 302 1 622 206 0 57 chr15 10941860 10942001 -74753753 - FLAM_A SINE Alu 0 133 1 2023 136 3 3 chr15 10942030 10942325 -74753429 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr15 10942755 10942778 -74752976 + AT_rich Low_complexity Low_complexity 1 23 0 1114 218 13 21 chr15 10943157 10943396 -74752358 - AluJo SINE Alu -21 291 55 1385 198 61 27 chr15 10943603 10943896 -74751858 + AluJo SINE Alu 1 303 -9 543 226 139 83 chr15 10943934 10944235 -74751519 + L2 LINE L2 2996 3313 0 2093 110 13 13 chr15 10945506 10945807 -74749947 + AluJb SINE Alu 1 301 -11 35 54 0 0 chr15 10946374 10946430 -74749324 + AT_rich Low_complexity Low_complexity 1 56 0 2295 103 17 3 chr15 10946888 10947189 -74748565 + AluSx SINE Alu 1 305 -7 29 28 0 0 chr15 10947309 10947345 -74748409 + AT_rich Low_complexity Low_complexity 1 36 0 2366 71 3 59 chr15 10947763 10948087 -74747667 - AluY SINE Alu -5 306 1 2264 86 10 10 chr15 10948303 10948604 -74747150 - AluSq SINE Alu -12 301 1 2275 109 0 0 chr15 10948902 10949196 -74746558 + AluSq SINE Alu 1 294 -19 2158 101 7 3 chr15 10949198 10949494 -74746260 + AluSq SINE Alu 1 297 -16 1604 45 5 0 chr15 10950835 10951034 -74744720 - L1PA4 LINE L1 0 6155 5956 180 152 0 0 chr15 10951566 10951599 -74744155 + T-rich Low_complexity Low_complexity 1 33 0 340 243 0 0 chr15 10951609 10951679 -74744075 - FRAM/FAM SINE Alu -97 69 1 180 0 0 0 chr15 10951927 10951947 -74743807 + (T)n Simple_repeat Simple_repeat 1 20 0 2236 99 7 0 chr15 10952524 10952818 -74742936 - AluSq SINE Alu -17 296 1 746 182 52 19 chr15 10953964 10954118 -74741636 + FRAM SINE Alu 1 159 -17 2139 123 0 7 chr15 10954937 10955245 -74740509 - AluSg SINE Alu -4 306 1 965 173 9 28 chr15 10955328 10955542 -74740212 + L1MA3 LINE L1 6096 6305 0 248 115 49 49 chr15 10955696 10955757 -74739997 + L1MC/D LINE L1 5747 5807 -2001 2315 89 3 10 chr15 10955764 10956077 -74739677 + AluSp SINE Alu 1 311 -2 195 278 28 69 chr15 10956756 10956828 -74738926 + MIR SINE MIR 45 113 -95 668 287 139 35 chr15 10957156 10957703 -74738051 - L1MEd LINE L1 -5084 1035 432 293 133 56 100 chr15 10957898 10957988 -74737766 - L1MEd LINE L1 -5967 152 67 2055 129 4 0 chr15 10958073 10958351 -74737403 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr15 10958351 10958383 -74737371 + (CA)n Simple_repeat Simple_repeat 1 32 0 682 153 0 9 chr15 10958670 10958781 -74736973 + AluSc SINE Alu 188 297 -12 340 282 43 43 chr15 10958903 10959020 -74736734 - L2 LINE L2 0 3272 3156 2288 95 3 3 chr15 10962729 10963024 -74732730 + AluSp SINE Alu 1 295 -18 2287 87 7 7 chr15 10963346 10963645 -74732109 + AluSc SINE Alu 1 299 -10 1708 106 109 4 chr15 10964114 10964379 -74731375 + AluSc SINE Alu 2 294 -15 2175 67 10 20 chr15 10964434 10964732 -74731022 - AluY SINE Alu -1 310 16 1338 54 12 12 chr15 10964835 10965002 -74730752 + AluSc SINE Alu 132 298 -11 227 125 0 0 chr15 10965005 10965037 -74730717 - Tigger5 DNA MER2_type -2290 33 2 264 226 0 0 chr15 10965310 10965372 -74730382 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 282 85 0 0 chr15 10965372 10965419 -74730335 - Alu SINE Alu 0 302 256 814 206 19 31 chr15 10965419 10965579 -74730175 + FAM SINE Alu 1 158 -17 2029 136 0 17 chr15 10965671 10965808 -74729946 + AluSx SINE Alu 1 139 -173 2175 102 20 3 chr15 10965808 10966101 -74729653 + AluSg SINE Alu 1 298 -12 2029 136 0 17 chr15 10966101 10966264 -74729490 + AluSx SINE Alu 139 296 -16 242 244 44 0 chr15 10966327 10966417 -74729337 + L1MC/D LINE L1 5744 5837 -1971 2325 83 0 3 chr15 10967717 10968018 -74727736 - AluSg SINE Alu -10 300 1 21 0 0 0 chr15 10968343 10968364 -74727390 + AT_rich Low_complexity Low_complexity 1 21 0 1725 106 0 4 chr15 10968443 10968670 -74727084 + AluSc SINE Alu 70 295 -14 233 185 19 0 chr15 10968744 10968798 -74726956 + LTR33 LTR ERVL 5 59 -462 521 268 56 20 chr15 10968928 10969126 -74726628 + LTR33 LTR ERVL 313 517 -4 2164 112 0 40 chr15 10969131 10969454 -74726300 - AluSx SINE Alu -2 310 1 318 275 64 24 chr15 10969648 10969924 -74725830 + L1MC5 LINE L1 7537 7820 -141 256 143 57 57 chr15 10970018 10970088 -74725666 + L1ME LINE L1 5721 5790 -331 1721 181 14 0 chr15 10970293 10970585 -74725169 - AluJo SINE Alu -14 298 3 1753 184 0 0 chr15 10970749 10971043 -74724711 + AluJo SINE Alu 6 299 -13 1358 109 18 123 chr15 10972973 10973258 -74722496 + MER75 DNA T2_type 5 259 -255 2167 101 0 24 chr15 10973360 10973658 -74722096 - AluSc SINE Alu -18 291 1 3529 124 43 50 chr15 10973658 10973852 -74721902 - L1MB2 LINE L1 -38 6133 5939 2158 122 0 0 chr15 10973852 10974140 -74721614 - AluSg SINE Alu -20 290 3 3529 124 43 50 chr15 10974140 10974588 -74721166 - L1MB2 LINE L1 -232 5939 5495 1573 203 10 13 chr15 10974589 10974899 -74720855 - AluJb SINE Alu -3 309 1 945 219 37 62 chr15 10974900 10975148 -74720606 - L1MB2 LINE L1 -816 5330 5090 2058 132 3 0 chr15 10975148 10975458 -74720296 - AluSx SINE Alu 0 312 2 945 219 37 62 chr15 10975458 10975533 -74720221 - L1MB2 LINE L1 -1056 5090 5015 2506 195 161 133 chr15 10975663 10976654 -74719100 + LTR28 LTR ERV1 1 1019 -1 2159 123 0 10 chr15 10976690 10976998 -74718756 - AluSx SINE Alu -7 305 1 2303 118 0 0 chr15 10977156 10977462 -74718292 - AluSq SINE Alu -7 306 1 1032 193 114 31 chr15 10977780 10978034 -74717720 + ORSL DNA AcHobo 1 275 0 2146 114 3 7 chr15 10978233 10978541 -74717213 - AluSx SINE Alu -5 307 1 1914 118 76 0 chr15 10979546 10979835 -74715919 - AluSx SINE Alu -1 311 1 2106 119 3 0 chr15 10980185 10980478 -74715276 - AluSx SINE Alu -18 294 1 262 319 169 19 chr15 10980667 10980827 -74714927 + L3 LINE CR1 1323 1506 -71 7107 117 23 16 chr15 10981040 10981196 -74714558 - L1MA2 LINE L1 0 6304 6150 2296 80 7 10 chr15 10981196 10981498 -74714256 - AluSx SINE Alu -11 301 1 7107 117 23 16 chr15 10981498 10982580 -74713174 - L1MA2 LINE L1 -154 6150 5076 1991 150 0 6 chr15 10982580 10982893 -74712861 - AluJb SINE Alu -1 311 1 7107 117 23 16 chr15 10982893 10982980 -74712774 - L1MA2 LINE L1 -1228 5076 4991 2470 155 98 26 chr15 10982980 10983437 -74712317 + LTR2B LTR ERV1 1 490 0 7107 117 23 16 chr15 10983437 10983792 -74711962 - L1MA2 LINE L1 -1313 4991 4618 625 270 11 11 chr15 10984023 10984201 -74711553 - MER5B DNA MER1_type 0 178 1 675 287 33 29 chr15 10984380 10984624 -74711130 + MIR SINE MIR 6 250 -12 2261 98 17 0 chr15 10984632 10984928 -74710826 + AluSq SINE Alu 1 301 -12 240 300 154 89 chr15 10986227 10986610 -74709144 - L2 LINE L2 0 3272 2865 1625 120 74 35 chr15 10986722 10987006 -74708748 + AluJo SINE Alu 1 295 -17 1217 160 78 14 chr15 10988285 10988504 -74707250 - AluJo SINE Alu -74 238 6 4544 169 63 29 chr15 10988524 10989568 -74706186 - L1MB8 LINE L1 -1 6177 5064 2137 120 3 3 chr15 10989568 10989868 -74705886 - AluSx SINE Alu -12 300 1 4544 169 63 29 chr15 10989868 10990674 -74705080 - L1MB8 LINE L1 -1114 5064 4286 305 333 28 28 chr15 10990742 10990919 -74704835 + L2 LINE L2 2535 2711 -603 1701 121 114 0 chr15 10992450 10992722 -74703032 + AluSx SINE Alu 1 303 -9 1941 86 127 4 chr15 10992735 10993003 -74702751 + AluSp SINE Alu 1 301 -2 652 282 190 0 chr15 10993056 10993272 -74702482 + MIR SINE MIR 6 262 0 734 215 0 15 chr15 10994592 10994727 -74701027 + FLAM_C SINE Alu 1 133 0 2099 104 7 0 chr15 10996481 10996761 -74698993 + AluSx SINE Alu 1 282 -30 2143 119 3 0 chr15 10997518 10997813 -74697941 - AluSx SINE Alu -16 296 1 503 76 13 0 chr15 11048106 11048185 -74647569 - L1PB2 LINE L1 -7 6144 6065 500 282 63 41 chr15 11048188 11048504 -74647250 + L2 LINE L2 744 1066 -2248 367 313 0 0 chr15 11049452 11049548 -74646206 + MIR SINE MIR 164 259 -3 939 205 111 5 chr15 11049585 11049775 -74645979 - MIR SINE MIR -47 215 6 1926 167 0 0 chr15 11049801 11050089 -74645665 - AluJo SINE Alu -24 288 1 207 69 0 0 chr15 11050113 11050142 -74645612 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2356 98 3 0 chr15 11050791 11051096 -74644658 - AluY SINE Alu -5 306 1 25 0 0 0 chr15 11052070 11052095 -74643659 + AT_rich Low_complexity Low_complexity 1 25 0 245 258 55 55 chr15 11052729 11052857 -74642897 - L1MC5 LINE L1 -83 7878 7751 280 328 102 16 chr15 11053048 11053176 -74642578 + MIR3 SINE MIR 4 142 -66 303 202 60 24 chr15 11053397 11053481 -74642273 + L1PB4 LINE L1 5999 6085 -71 356 105 0 0 chr15 11053484 11053541 -74642213 + Alu SINE Alu 1 57 -244 1621 195 11 0 chr15 11055238 11055525 -74640229 + AluJo SINE Alu 1 290 -22 420 341 147 13 chr15 11056212 11056526 -74639228 - L2 LINE L2 -550 2764 2409 739 296 71 46 chr15 11057933 11058284 -74637470 + L2 LINE L2 2945 3304 -9 2317 87 0 3 chr15 11058611 11058910 -74636844 + AluSx SINE Alu 1 298 -14 1741 164 38 0 chr15 11058921 11059208 -74636546 + AluJo SINE Alu 1 298 -14 2387 124 39 10 chr15 11059366 11059776 -74635978 + L1MA7 LINE L1 5865 6286 -5 2445 49 0 0 chr15 11059824 11060111 -74635643 - AluY SINE Alu -24 287 1 2077 99 10 10 chr15 11060860 11061152 -74634602 - AluSx SINE Alu -20 292 1 248 25 0 50 chr15 11061320 11061360 -74634394 - L1M1 LINE L1 -868 5436 5399 1846 75 24 0 chr15 11061362 11061617 -74634137 + L1P4 LINE L1 5446 5706 -460 1721 196 87 26 chr15 11061623 11062394 -74633360 + LTR28 LTR ERV1 54 941 -79 320 259 37 52 chr15 11062429 11062564 -74633190 + LTR27 LTR ERV1 502 634 -2 779 132 0 0 chr15 11062568 11062689 -74633065 + L1PA16 LINE L1 6042 6162 -4 1558 161 44 11 chr15 11062691 11062964 -74632790 + AluJo SINE Alu 1 282 -30 928 186 74 157 chr15 11063343 11064156 -74631598 + L1MC5 LINE L1 6827 7571 -390 405 224 132 13 chr15 11064233 11064385 -74631369 + L1MC5 LINE L1 7742 7911 -50 2464 55 0 3 chr15 11064468 11064758 -74630996 + AluY SINE Alu 1 289 -22 406 329 109 62 chr15 11064792 11065102 -74630652 - L2 LINE L2 0 3313 2970 746 240 77 5 chr15 11065102 11065298 -74630456 + MER63A DNA MER1_type 1 210 0 406 329 109 62 chr15 11065298 11065473 -74630281 - L2 LINE L2 -343 2970 2805 198 0 0 0 chr15 11065562 11065584 -74630170 + (T)n Simple_repeat Simple_repeat 1 22 0 511 252 133 28 chr15 11065605 11065957 -74629797 + L1MEc LINE L1 2184 2538 -3677 1781 151 36 0 chr15 11066007 11066285 -74629469 - AluJo SINE Alu -24 288 1 352 347 104 19 chr15 11066392 11066767 -74628987 - L1MCa LINE L1 -4063 2544 2138 788 167 80 0 chr15 11066970 11067120 -74628634 - MER20 DNA MER1_type -3 216 55 705 187 0 0 chr15 11067120 11067243 -74628511 + FLAM_C SINE Alu 1 123 -20 312 201 112 7 chr15 11067270 11067432 -74628322 - L1MCa LINE L1 -971 1816 1407 2273 113 0 3 chr15 11068398 11068709 -74627045 - AluSx SINE Alu 0 312 3 1524 199 51 83 chr15 11069178 11069689 -74626065 - L1MC5 LINE L1 -492 7469 6976 1207 149 176 42 chr15 11069689 11069951 -74625803 - AluJo SINE Alu -15 297 1 1524 199 51 83 chr15 11069951 11069991 -74625763 - L1MC5 LINE L1 -985 6976 6936 1554 111 103 109 chr15 11070003 11070074 -74625680 - THE1C LTR MaLR 0 375 305 2121 148 0 0 chr15 11070074 11070384 -74625370 + AluSx SINE Alu 1 310 -2 1554 111 103 109 chr15 11070384 11070689 -74625065 - THE1C LTR MaLR -70 305 1 649 285 37 44 chr15 11070702 11071085 -74624669 - L1M4 LINE L1 -2220 3926 3547 243 0 0 0 chr15 11071156 11071183 -74624571 + (CA)n Simple_repeat Simple_repeat 2 28 0 2131 109 16 10 chr15 11071519 11071823 -74623931 - AluSg SINE Alu -2 308 3 2077 147 0 0 chr15 11072622 11072934 -74622820 + AluSx SINE Alu 1 312 0 250 226 38 0 chr15 11072991 11073044 -74622710 - L2 LINE L2 -3 3310 3256 322 284 68 81 chr15 11073322 11073959 -74621795 + L1ME4a LINE L1 5375 6036 -85 2286 84 7 0 chr15 11074086 11074382 -74621372 + AluY SINE Alu 1 298 -13 3161 178 30 2 chr15 11075121 11075695 -74620059 + L1MB4 LINE L1 5590 6179 -1 746 169 118 6 chr15 11076176 11076354 -74619400 + Charlie4 DNA MER1_type 36 233 -1728 1549 181 14 11 chr15 11076706 11076987 -74618767 + AluJo SINE Alu 1 282 -30 208 238 75 38 chr15 11077165 11077245 -74618509 - MIR3 SINE MIR -7 201 119 2120 106 3 0 chr15 11077698 11078025 -74617729 + AluSx SINE Alu 1 328 0 2024 145 0 3 chr15 11078263 11078574 -74617180 + AluSx SINE Alu 3 312 0 765 169 0 31 chr15 11078809 11078926 -74616828 + AluJo/FLAM SINE Alu 5 119 -183 1976 169 0 0 chr15 11078926 11079228 -74616526 - AluJb SINE Alu -10 302 1 765 169 0 31 chr15 11079228 11079240 -74616514 + AluJo/FLAM SINE Alu 119 130 -172 2357 75 0 0 chr15 11079261 11079553 -74616201 + AluY SINE Alu 20 311 0 201 226 102 95 chr15 11080541 11080678 -74615076 - MIR SINE MIR -62 200 63 683 235 70 0 chr15 11080907 11081094 -74614660 + MIR SINE MIR 63 262 0 220 279 15 15 chr15 11081685 11081753 -74614001 + MER5A DNA MER1_type 117 184 -5 2347 86 0 29 chr15 11082605 11082919 -74612835 + AluSx SINE Alu 5 309 -3 819 185 0 0 chr15 11082933 11083063 -74612691 + FLAM_A SINE Alu 13 142 0 2501 65 7 3 chr15 11083544 11083852 -74611902 + AluSp SINE Alu 1 309 -4 1966 106 3 25 chr15 11084172 11084455 -74611299 + AluY SINE Alu 1 277 -34 2256 115 0 0 chr15 11084567 11084871 -74610883 + AluSx SINE Alu 7 310 -2 2059 137 19 0 chr15 11085245 11085560 -74610194 + L1MA4 LINE L1 5699 6019 -281 23 0 0 0 chr15 11085646 11085669 -74610085 + AT_rich Low_complexity Low_complexity 1 23 0 2057 88 33 4 chr15 11085679 11086004 -74609750 + AluY SINE Alu 1 333 0 185 348 67 0 chr15 11086095 11086184 -74609570 - MIR SINE MIR -118 144 50 2971 205 49 31 chr15 11086473 11087149 -74608605 + L1ME2 LINE L1 5431 6122 -42 2086 109 34 0 chr15 11087149 11087443 -74608311 + AluSp SINE Alu 2 305 -8 2971 205 49 31 chr15 11087443 11087477 -74608277 + L1ME2 LINE L1 6122 6154 -10 2418 99 0 3 chr15 11087740 11088053 -74607701 + AluSx SINE Alu 1 312 0 1531 227 130 19 chr15 11088102 11088360 -74607394 + L1MB7 LINE L1 5174 5402 -782 2326 125 12 18 chr15 11088360 11088695 -74607059 + MER1B DNA MER1_type 5 337 0 1531 227 130 19 chr15 11088695 11088715 -74607039 + L1MB7 LINE L1 5402 5418 -766 1627 171 43 7 chr15 11088715 11088995 -74606759 + AluJb SINE Alu 3 292 -20 1531 227 130 19 chr15 11088995 11089387 -74606367 + L1MB7 LINE L1 5418 5902 -282 22 0 0 0 chr15 11089652 11089674 -74606080 + AT_rich Low_complexity Low_complexity 1 22 0 1116 212 113 3 chr15 11089866 11090158 -74605596 - MER5C DNA MER1_type 0 324 1 26 0 0 0 chr15 11090665 11090691 -74605063 + AT_rich Low_complexity Low_complexity 1 26 0 296 224 224 0 chr15 11090799 11090897 -74604857 - L2 LINE L2 0 3272 3153 1401 143 0 59 chr15 11091728 11091966 -74603788 - AluJb SINE Alu -4 308 85 388 302 24 8 chr15 11092023 11092149 -74603605 + MIR SINE MIR 3 130 -132 2133 108 24 0 chr15 11092429 11092716 -74603038 + AluSg SINE Alu 1 294 -16 263 296 0 0 chr15 11093433 11093504 -74602250 - HsTC2 DNA Tc2 -1827 71 1 1850 133 0 70 chr15 11093641 11093957 -74601797 + AluJo SINE Alu 1 294 -18 386 305 146 26 chr15 11094182 11094333 -74601421 + MER91A DNA MER1_type 1 169 -27 572 165 0 0 chr15 11094779 11094858 -74600896 + AluJ/FLAM SINE Alu 2 80 -232 639 237 118 65 chr15 11094867 11095360 -74600394 - L1MC5 LINE L1 -55 7906 7388 1990 150 20 0 chr15 11095435 11095741 -74600013 + AluJb SINE Alu 1 312 0 1555 104 0 5 chr15 11095888 11096122 -74599632 + AluSc SINE Alu 83 315 0 1704 111 126 4 chr15 11096224 11096485 -74599269 - AluSx SINE Alu -19 293 1 197 211 35 35 chr15 11096489 11096546 -74599208 - MER5B DNA MER1_type -120 58 2 183 254 60 15 chr15 11096698 11096765 -74598989 - L2 LINE L2 -94 3219 3150 258 325 77 34 chr15 11097397 11097514 -74598240 + L2 LINE L2 3141 3262 -10 2122 124 7 0 chr15 11097547 11097854 -74597900 + AluSx SINE Alu 1 309 -3 425 283 133 8 chr15 11097941 11098061 -74597693 + MIR3 SINE MIR 3 137 -71 1355 113 0 10 chr15 11098262 11098456 -74597298 - AluSg/x SINE Alu 0 312 121 2104 148 32 11 chr15 11098582 11098927 -74596827 + L1MB2 LINE L1 5785 6140 -31 2097 135 6 6 chr15 11098927 11099239 -74596515 - AluSx SINE Alu 0 312 1 2104 148 32 11 chr15 11099239 11099272 -74596482 + L1MB2 LINE L1 6140 6171 0 2108 105 28 3 chr15 11099378 11099663 -74596091 + AluSx SINE Alu 3 294 -18 36839 98 14 14 chr15 11099860 11106010 -74589744 - L1PA7 LINE L1 0 6154 11 24 0 0 0 chr15 11106153 11106177 -74589577 + AT_rich Low_complexity Low_complexity 1 24 0 2107 128 3 0 chr15 11106177 11106467 -74589287 - AluSx SINE Alu -21 291 1 1561 192 7 17 chr15 11106474 11106766 -74588988 - AluJb SINE Alu -23 289 1 1925 108 0 78 chr15 11107112 11107418 -74588336 - AluSg SINE Alu -28 282 1 1310 220 45 14 chr15 11107427 11107718 -74588036 - AluJo SINE Alu -12 300 1 1153 264 125 70 chr15 11108140 11109004 -74586750 + L2 LINE L2 2392 3313 0 2307 80 33 3 chr15 11109033 11109332 -74586422 + AluSg SINE Alu 1 308 -2 693 302 150 39 chr15 11109373 11109557 -74586197 + L2 LINE L2 2512 2674 -639 1478 186 34 28 chr15 11109557 11109848 -74585906 + AluJb SINE Alu 1 293 -19 693 302 150 39 chr15 11109848 11110234 -74585520 + L2 LINE L2 2674 3182 -131 2276 116 0 0 chr15 11110234 11110544 -74585210 - AluSq SINE Alu -3 310 1 693 302 150 39 chr15 11110544 11110692 -74585062 + L2 LINE L2 3182 3312 -1 278 289 63 42 chr15 11110705 11110847 -74584907 + MER5A DNA MER1_type 45 189 0 273 57 0 0 chr15 11110865 11110900 -74584854 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 1221 209 8 4 chr15 11110900 11111134 -74584620 - AluJo SINE Alu -77 235 1 286 269 19 19 chr15 11111257 11111361 -74584393 - MER103 DNA DNA -19 147 44 28 61 0 0 chr15 11111629 11111678 -74584076 + AT_rich Low_complexity Low_complexity 1 49 0 2148 96 4 4 chr15 11111788 11112097 -74583657 - AluSc SINE Alu 0 309 1 4319 119 8 37 chr15 11112314 11113035 -74582719 - L1MA5A LINE L1 -56 6241 5542 2130 102 3 0 chr15 11114245 11114572 -74581182 - AluSx SINE Alu 0 328 1 293 222 111 60 chr15 11114937 11115054 -74580700 - MIR SINE MIR -3 259 137 307 247 25 0 chr15 11115054 11115135 -74580619 + HAL1 LINE L1 1777 1859 -648 284 326 27 34 chr15 11115143 11115290 -74580464 + MIR SINE MIR 9 154 -108 2217 118 0 3 chr15 11115603 11115900 -74579854 + AluSp SINE Alu 1 296 -17 195 354 49 12 chr15 11116049 11116131 -74579623 - L2 LINE L2 -49 3223 3139 728 230 168 7 chr15 11117000 11117304 -74578450 - MER113 DNA MER1_type? -163 358 6 289 288 166 14 chr15 11117332 11117471 -74578283 - MIR SINE MIR -83 179 20 295 228 38 51 chr15 11117904 11117983 -74577771 - L2 LINE L2 -4 3309 3232 2116 104 0 0 chr15 11118096 11118401 -74577353 + AluSg SINE Alu 15 310 0 401 289 39 23 chr15 11119255 11119383 -74576371 - L2 LINE L2 -4 3268 3139 248 306 276 17 chr15 11119672 11119904 -74575850 - L2 LINE L2 -497 2817 2526 1403 174 48 37 chr15 11120401 11120695 -74575059 + AluJb SINE Alu 1 297 -15 1899 92 88 4 chr15 11120849 11121122 -74574632 - AluSq SINE Alu -17 296 1 754 66 0 0 chr15 11121585 11121676 -74574078 + AluS SINE Alu 2 92 -220 2041 106 4 0 chr15 11122290 11122554 -74573200 + AluSq SINE Alu 1 265 -48 1760 167 3 27 chr15 11122554 11122854 -74572900 + AluJo SINE Alu 10 302 -10 438 169 49 78 chr15 11123257 11123399 -74572355 - L1MD2 LINE L1 -409 5950 5813 * 3361 178 77 36 chr15 11123393 11123433 -74572321 - L1MB7 LINE L1 0 6184 6147 2037 143 97 30 chr15 11123433 11123804 -74571950 + MSTD LTR MaLR 1 396 0 3361 178 77 36 chr15 11123804 11124544 -74571210 - L1MB7 LINE L1 -37 6147 5372 485 299 143 29 chr15 11124939 11125324 -74570430 - HAL1 LINE L1 -966 1541 1113 495 239 34 86 chr15 11125349 11125558 -74570196 - L2 LINE L2 0 3313 3116 2268 86 3 13 chr15 11125633 11125934 -74569820 - AluY SINE Alu -13 298 1 923 239 50 41 chr15 11126739 11127057 -74568697 + L1ME1 LINE L1 5845 6165 -1 601 189 94 47 chr15 11127356 11127483 -74568271 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr15 11127956 11127988 -74567766 + AT_rich Low_complexity Low_complexity 1 32 0 2147 130 0 13 chr15 11128215 11128522 -74567232 + AluSx SINE Alu 1 303 -9 419 312 147 6 chr15 11128792 11128949 -74566805 + MIR SINE MIR 14 192 -70 22 94 0 0 chr15 11129158 11129222 -74566532 + AT_rich Low_complexity Low_complexity 1 64 0 1120 133 152 38 chr15 11129876 11130045 -74565709 - AluJb SINE Alu -17 295 96 234 0 0 0 chr15 11130045 11130071 -74565683 + (TG)n Simple_repeat Simple_repeat 2 27 0 1120 133 152 38 chr15 11130071 11130111 -74565643 - AluJb SINE Alu -216 96 62 238 94 0 0 chr15 11130131 11130163 -74565591 - Alu SINE Alu -37 96 65 198 0 0 0 chr15 11130163 11130185 -74565569 + (TG)n Simple_repeat Simple_repeat 2 23 0 260 86 0 0 chr15 11130190 11130225 -74565529 - AluJ/FLAM SINE Alu -206 96 62 238 94 0 0 chr15 11130241 11130273 -74565481 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 11130273 11130297 -74565457 + (TG)n Simple_repeat Simple_repeat 2 25 0 238 94 0 0 chr15 11130302 11130334 -74565420 - Alu SINE Alu -206 96 65 246 62 0 0 chr15 11130334 11130366 -74565388 + (TG)n Simple_repeat Simple_repeat 2 33 0 366 23 0 0 chr15 11130404 11130447 -74565307 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 94 0 0 chr15 11130452 11130484 -74565270 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 11130484 11130508 -74565246 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 91 0 0 chr15 11130513 11130546 -74565208 - Alu SINE Alu -206 96 64 270 0 0 0 chr15 11130547 11130577 -74565177 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 94 0 0 chr15 11130582 11130614 -74565140 - Alu SINE Alu -37 96 65 450 0 0 0 chr15 11130614 11130664 -74565090 + (TG)n Simple_repeat Simple_repeat 2 51 0 630 158 0 0 chr15 11130668 11130763 -74564991 - AluJ/FLAM SINE Alu -216 96 2 31 26 0 0 chr15 11131150 11131188 -74564566 + AT_rich Low_complexity Low_complexity 1 38 0 259 287 189 6 chr15 11131407 11131571 -74564183 + MIR SINE MIR 6 199 -63 465 281 69 26 chr15 11131851 11132101 -74563653 - MIR SINE MIR -13 249 18 278 229 153 70 chr15 11132219 11132376 -74563378 - L2 LINE L2 -18 3295 3126 13882 109 31 96 chr15 11132507 11133671 -74562083 + Tigger1 DNA MER2_type 1 1239 -1179 710 201 15 22 chr15 11133671 11133805 -74561949 + FLAM_A SINE Alu 1 133 0 13882 109 31 96 chr15 11133805 11133895 -74561859 + Tigger1 DNA MER2_type 1239 1333 -1085 2289 97 7 3 chr15 11133895 11134193 -74561561 - AluSx SINE Alu -13 299 1 13882 109 31 96 chr15 11134193 11134574 -74561180 + Tigger1 DNA MER2_type 1333 1737 -681 734 81 20 10 chr15 11134574 11134673 -74561081 + HY3 scRNA scRNA 1 100 -1 13882 109 31 96 chr15 11134673 11135287 -74560467 + Tigger1 DNA MER2_type 1737 2389 -29 828 178 0 37 chr15 11135287 11135422 -74560332 + FLAM_A SINE Alu 1 130 -12 13882 109 31 96 chr15 11135422 11135550 -74560204 + Tigger1 DNA MER2_type 2389 2348 -70 1598 97 198 0 chr15 11135550 11135813 -74559941 + AluY SINE Alu 1 310 0 13882 109 31 96 chr15 11135813 11135881 -74559873 + Tigger1 DNA MER2_type 2347 2418 0 2210 117 3 0 chr15 11137268 11137576 -74558178 + AluSx SINE Alu 1 309 -3 1754 105 0 39 chr15 11138977 11139234 -74556520 - AluSx SINE Alu -10 302 56 2110 134 7 3 chr15 11139377 11139682 -74556072 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 11143470 11143505 -74552249 + GC_rich Low_complexity Low_complexity 1 35 0 2151 108 0 19 chr15 11144020 11144335 -74551419 + AluSq SINE Alu 1 309 -4 655 141 8 6 chr15 11145864 11146107 -74549647 + AluJ SINE Alu 1 297 -15 2264 105 0 0 chr15 11146254 11146550 -74549204 + AluSq SINE Alu 1 296 -17 2119 135 0 10 chr15 11146556 11146859 -74548895 + AluSx SINE Alu 1 300 -12 197 281 219 31 chr15 11146903 11146999 -74548755 - MIR SINE MIR -77 131 18 1948 119 46 16 chr15 11147844 11147949 -74547805 + AluJb SINE Alu 1 101 -211 185 56 0 56 chr15 11147949 11147985 -74547769 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1948 119 46 16 chr15 11147985 11148182 -74547572 + AluJb SINE Alu 101 312 0 1150 122 6 11 chr15 11148312 11148493 -74547261 - AluSx SINE Alu -132 180 1 225 315 37 9 chr15 11149416 11149524 -74546230 + L1ME LINE L1 5625 5735 -386 1909 93 72 7 chr15 11149589 11149867 -74545887 + AluSq SINE Alu 1 296 -17 2411 64 27 0 chr15 11149877 11150174 -74545580 + AluSg SINE Alu 1 305 -5 2408 65 0 3 chr15 11150382 11150674 -74545080 + AluY SINE Alu 1 291 -20 428 89 0 0 chr15 11152247 11152303 -74543451 + Alu SINE Alu 2 57 -261 187 316 0 0 chr15 11152476 11152533 -74543221 + L2 LINE L2 3234 3290 -23 2199 123 0 3 chr15 11153224 11153532 -74542222 + AluSx SINE Alu 1 307 -5 777 171 0 0 chr15 11153764 11153881 -74541873 + AluJo/FLAM SINE Alu 5 121 -191 1518 172 0 0 chr15 11153881 11154119 -74541635 - AluJb SINE Alu -11 301 64 369 0 0 0 chr15 11154271 11154312 -74541442 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chr15 11154311 11154343 -74541411 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 358 225 73 169 chr15 11154414 11154810 -74540944 - L1M2 LINE L1 -5914 935 578 1895 111 28 3 chr15 11155370 11155659 -74540095 + AluSq SINE Alu 1 296 -17 1951 95 27 34 chr15 11155659 11155955 -74539799 - AluSx SINE Alu -16 296 3 5581 162 20 47 chr15 11156610 11157585 -74538169 - L1MA9 LINE L1 0 6312 5365 316 111 0 0 chr15 11157585 11157630 -74538124 + L1PA3 LINE L1 6109 6153 -2 5581 162 20 47 chr15 11157630 11157816 -74537938 - L1MA9 LINE L1 -947 5365 5175 350 297 87 19 chr15 11158673 11158939 -74536815 - L1ME3A LINE L1 -234 5936 5653 186 103 0 0 chr15 11158952 11158981 -74536773 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 301 246 117 84 chr15 11159035 11159214 -74536540 - L1ME LINE L1 -5045 1025 841 438 250 139 5 chr15 11159252 11159408 -74536346 + MER3 DNA MER1_type 9 131 -78 1563 189 7 13 chr15 11159500 11159802 -74535952 + AluJb SINE Alu 6 305 -7 378 275 201 31 chr15 11159980 11160304 -74535450 - L1ME4a LINE L1 -224 5897 5519 2145 30 4 52 chr15 11160466 11160737 -74535017 - AluY SINE Alu -14 297 40 354 275 138 9 chr15 11161158 11161267 -74534487 + MIR SINE MIR 14 136 -126 211 354 80 0 chr15 11162545 11162660 -74533094 + MIR SINE MIR 24 152 -56 1145 173 12 71 chr15 11162735 11163032 -74532722 + AluJo SINE Alu 44 325 0 184 234 16 62 chr15 11163033 11163097 -74532657 + MIR SINE MIR 194 254 -8 564 232 150 36 chr15 11163409 11163629 -74532125 - L1ME LINE L1 -382 5780 5536 1228 116 48 16 chr15 11163637 11163826 -74531928 - AluY SINE Alu -11 300 106 24 91 0 0 chr15 11165302 11165368 -74530386 + AT_rich Low_complexity Low_complexity 1 66 0 234 0 0 0 chr15 11165909 11165935 -74529819 + (CA)n Simple_repeat Simple_repeat 2 27 0 190 329 47 12 chr15 11166237 11166322 -74529432 + L2 LINE L2 2855 2942 -330 29 47 0 0 chr15 11166489 11166532 -74529222 + AT_rich Low_complexity Low_complexity 1 43 0 285 284 15 0 chr15 11166568 11166635 -74529119 + L2 LINE L2 3186 3253 -19 15028 48 0 0 chr15 11167860 11169692 -74526062 + L1P LINE L1 3246 5077 -1069 549 320 40 33 chr15 11170312 11170612 -74525142 + LTR16A1 LTR ERVL 147 448 -9 501 328 122 3 chr15 11171657 11171986 -74523768 + L1MC/D LINE L1 5454 5821 -1987 1947 115 7 18 chr15 11173108 11173386 -74522368 + AluSc SINE Alu 35 309 0 1417 61 0 20 chr15 11173970 11174168 -74521586 - L1PA5 LINE L1 -1 6153 5960 234 91 0 0 chr15 11174715 11174748 -74521006 + (TG)n Simple_repeat Simple_repeat 1 33 0 276 30 0 0 chr15 11176832 11176865 -74518889 + (CA)n Simple_repeat Simple_repeat 1 33 0 27 0 0 0 chr15 11178995 11179022 -74516732 + AT_rich Low_complexity Low_complexity 1 27 0 2423 85 0 7 chr15 11180958 11181263 -74514491 - AluSg SINE Alu -7 303 1 1772 166 10 26 chr15 11181266 11181573 -74514181 - AluJb SINE Alu -10 302 1 1747 189 0 38 chr15 11186161 11186474 -74509280 - AluJb SINE Alu -11 301 1 339 256 0 11 chr15 11186669 11186759 -74508995 + L3b LINE CR1 1252 1340 -243 30 77 0 0 chr15 11186995 11187060 -74508694 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr15 11189772 11189796 -74505958 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2278 90 4 0 chr15 11189798 11190077 -74505677 - AluSx SINE Alu -32 280 1 226 254 8 68 chr15 11190118 11190236 -74505518 + CT-rich Low_complexity Low_complexity 2 112 0 2363 70 0 88 chr15 11192490 11192832 -74502922 - AluSp SINE Alu -1 312 1 213 39 0 0 chr15 11194689 11194715 -74501039 + (CCCCCG)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr15 11195256 11195344 -74500410 + GC_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr15 11195400 11195422 -74500332 + GC_rich Low_complexity Low_complexity 1 22 0 737 144 0 8 chr15 11196464 11196582 -74499172 - FLAM_C SINE Alu -19 124 8 426 20 0 0 chr15 11196692 11196743 -74499011 + (TG)n Simple_repeat Simple_repeat 2 52 0 2258 106 0 20 chr15 11196744 11197047 -74498707 - AluSg SINE Alu -12 298 2 2230 87 16 42 chr15 11197049 11197359 -74498395 - AluSq SINE Alu -11 302 1 2008 200 105 40 chr15 11197433 11197515 -74498239 - LTR49 LTR ERV1 -15 580 505 2319 84 3 50 chr15 11197515 11197835 -74497919 - AluSx SINE Alu -7 305 1 2008 200 105 40 chr15 11197835 11198297 -74497457 - LTR49 LTR ERV1 -90 505 1 665 199 15 11 chr15 11198817 11199088 -74496666 + CT-rich Low_complexity Low_complexity 1 272 0 739 151 20 12 chr15 11199109 11199363 -74496391 + CT-rich Low_complexity Low_complexity 1 256 0 603 149 79 26 chr15 11199363 11199477 -74496277 - FLAM_C SINE Alu -15 128 9 25 0 0 0 chr15 11199490 11199515 -74496239 + AT_rich Low_complexity Low_complexity 1 25 0 856 167 0 0 chr15 11199516 11199648 -74496106 - FLAM_C SINE Alu -5 138 7 1100 201 33 43 chr15 11199666 11200133 -74495621 + MLT1A2 LTR MaLR 1 374 0 2012 166 0 3 chr15 11200492 11200805 -74494949 + AluJb SINE Alu 1 312 0 1802 169 3 43 chr15 11201011 11201336 -74494418 + AluJb SINE Alu 1 312 0 22 35 0 0 chr15 11202855 11202884 -74492870 + AT_rich Low_complexity Low_complexity 1 29 0 1787 203 34 43 chr15 11203004 11203267 -74492487 + MER4D LTR ERV1 1 265 -638 183 80 0 0 chr15 11203267 11203292 -74492462 + (TA)n Simple_repeat Simple_repeat 1 25 0 1787 203 34 43 chr15 11203292 11203333 -74492421 + MER4D LTR ERV1 265 305 -598 2160 136 0 0 chr15 11203333 11203627 -74492127 - AluSc SINE Alu -15 294 1 1787 203 34 43 chr15 11203627 11203649 -74492105 + MER4D LTR ERV1 305 326 -577 464 0 18 0 chr15 11203649 11203705 -74492049 + (TA)n Simple_repeat Simple_repeat 2 58 0 279 0 0 0 chr15 11203706 11203737 -74492017 + (TG)n Simple_repeat Simple_repeat 2 32 0 1840 177 21 0 chr15 11203740 11204022 -74491732 - AluSx SINE Alu -24 288 1 1787 203 34 43 chr15 11204022 11204156 -74491598 + MER4D LTR ERV1 328 465 -438 1263 176 114 70 chr15 11204157 11204588 -74491166 + LTR7 LTR ERV1 1 450 0 2643 142 9 24 chr15 11204588 11205054 -74490700 + HERVH LTR ERV1 1 459 -7254 13282 136 6 22 chr15 11205108 11207348 -74488406 + HERVH LTR ERV1 793 2995 -4718 5595 111 8 2 chr15 11207327 11208182 -74487572 + HERVH LTR ERV1 3140 3999 -3714 * 5005 114 25 1 chr15 11208243 11208999 -74486755 + HERVH LTR ERV1 3995 4768 -2945 2641 103 7 12 chr15 11208997 11209413 -74486341 + HERVH LTR ERV1 7300 7713 0 * 1290 184 101 57 chr15 11209413 11209837 -74485917 + LTR7 LTR ERV1 1 443 -7 1908 130 35 130 chr15 11209851 11210312 -74485442 + MER4D LTR ERV1 487 903 0 3896 134 14 2 chr15 11210409 11211034 -74484720 + MER41B LTR ERV1 1 633 -2 4368 108 32 34 chr15 11211038 11211750 -74484004 + MER41B-int LTR ERV1 4 714 -5232 323 216 30 52 chr15 11211750 11211849 -74483905 + MER41B LTR ERV1 418 515 -120 2347 97 7 3 chr15 11211849 11212149 -74483605 - AluSq SINE Alu -8 305 5 323 216 30 52 chr15 11212149 11212183 -74483571 + MER41B LTR ERV1 515 548 -87 29 0 0 0 chr15 11212696 11212725 -74483029 + AT_rich Low_complexity Low_complexity 1 29 0 271 78 39 0 chr15 11215249 11215300 -74480454 + C-rich Low_complexity Low_complexity 90 142 0 191 214 24 0 chr15 11216073 11216115 -74479639 - MIR SINE MIR -62 146 103 208 235 39 0 chr15 11216613 11216664 -74479090 - MIR SINE MIR -61 147 95 399 238 118 41 chr15 11217659 11217828 -74477926 - MIR SINE MIR -59 149 16 216 0 0 0 chr15 11218014 11218038 -74477716 + (CA)n Simple_repeat Simple_repeat 2 25 0 329 226 78 26 chr15 11219432 11219547 -74476207 - L2 LINE L2 -5 3308 3188 301 331 119 0 chr15 11219554 11219705 -74476049 - MIR3 SINE MIR -9 199 31 360 318 62 6 chr15 11220608 11220784 -74474970 - MIR SINE MIR -29 233 48 1991 101 31 7 chr15 11220786 11221074 -74474680 - AluY SINE Alu -16 295 1 510 93 0 13 chr15 11223776 11223851 -74471903 + AluS SINE Alu 2 75 -238 2037 128 0 6 chr15 11224497 11224809 -74470945 + AluSx SINE Alu 1 310 -2 381 295 93 39 chr15 11224887 11225016 -74470738 - L2 LINE L2 -15 3257 3122 325 224 47 0 chr15 11225213 11225298 -74470456 - MIR SINE MIR -114 148 60 290 283 133 17 chr15 11225567 11225687 -74470067 + L2 LINE L2 3180 3313 0 646 269 65 20 chr15 11225773 11225974 -74469780 - MER82 DNA MER2_type 0 653 444 327 311 52 27 chr15 11226010 11226202 -74469552 + MIR SINE MIR 4 202 -57 318 316 0 11 chr15 11226221 11226316 -74469438 - MER82 DNA MER2_type -559 94 1 200 292 15 0 chr15 11226594 11226659 -74469095 + L2 LINE L2 3158 3223 -90 721 183 0 0 chr15 11226957 11227072 -74468682 - FLAM_A SINE Alu -18 115 1 325 91 0 0 chr15 11228855 11228899 -74466855 + Alu SINE Alu 1 44 -258 203 171 0 0 chr15 11228982 11229023 -74466731 + T-rich Low_complexity Low_complexity 5 45 0 435 297 115 50 chr15 11229255 11230030 -74465724 - L1MEd LINE L1 -3193 2936 2112 240 282 73 86 chr15 11230089 11230304 -74465450 - L1MEd LINE L1 -4974 1145 932 1310 148 33 121 chr15 11230304 11230634 -74465120 - AluJb SINE Alu 0 302 2 240 282 73 86 chr15 11230634 11230663 -74465091 - L1MEd LINE L1 -5187 932 904 413 320 85 29 chr15 11230739 11231045 -74464709 - L1MEd LINE L1 -5236 883 561 573 224 135 13 chr15 11231599 11231755 -74463999 + MIR SINE MIR 24 198 -64 1841 119 7 24 chr15 11233583 11233877 -74461877 - AluSq SINE Alu -24 289 1 238 285 45 73 chr15 11234430 11234609 -74461145 - L1ME3A LINE L1 -10 6160 5987 1221 202 0 13 chr15 11234694 11234932 -74460822 - MER106A DNA MER1_type -1 235 1 698 243 108 21 chr15 11234943 11235301 -74460453 - L1ME3A LINE L1 -218 5952 5535 222 37 0 0 chr15 11235884 11235911 -74459843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 607 195 0 81 chr15 11235914 11236063 -74459691 - AluJb SINE Alu -30 282 146 294 299 68 68 chr15 11236834 11237011 -74458743 + MIR SINE MIR 71 247 -15 21 36 0 0 chr15 11237147 11237175 -74458579 + AT_rich Low_complexity Low_complexity 1 28 0 256 291 23 23 chr15 11237407 11237493 -74458261 - MIR SINE MIR -70 192 107 1612 174 0 7 chr15 11237839 11238127 -74457627 + AluJo SINE Alu 1 286 -26 1138 178 0 10 chr15 11238685 11238893 -74456861 - AluSg/x SINE Alu -13 297 92 303 311 104 42 chr15 11239135 11239328 -74456426 + HAL1 LINE L1 2255 2459 -48 2130 115 0 7 chr15 11239583 11239887 -74455867 + AluSx SINE Alu 1 302 -10 337 163 62 31 chr15 11241483 11241612 -74454142 + (CA)n Simple_repeat Simple_repeat 1 133 0 235 150 24 63 chr15 11241726 11241853 -74453901 + (CACAC)n Simple_repeat Simple_repeat 5 126 0 249 215 47 19 chr15 11241872 11241979 -74453775 + (CA)n Simple_repeat Simple_repeat 1 110 0 181 230 27 0 chr15 11242461 11242535 -74453219 + C-rich Low_complexity Low_complexity 3 78 0 283 254 92 2 chr15 11242765 11242885 -74452869 - L1ME LINE L1 -363 5799 5668 336 24 0 0 chr15 11244854 11244895 -74450859 + (TG)n Simple_repeat Simple_repeat 2 42 0 2113 120 3 0 chr15 11245456 11245756 -74449998 - AluSx SINE Alu -11 301 1 2308 138 37 0 chr15 11246267 11246650 -74449104 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 11246767 11247034 -74448720 - MSTB LTR MaLR -183 243 1 2029 164 31 10 chr15 11248497 11248880 -74446874 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 11248881 11248968 -74446786 - AluSg/x SINE Alu -6 304 217 546 213 0 0 chr15 11248976 11249084 -74446670 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 11249119 11249639 -74446115 - MLT1H1 LTR MaLR 0 555 19 232 220 131 42 chr15 11249666 11249880 -74445874 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 11249949 11250266 -74445488 + AluJo SINE Alu 1 312 0 242 296 66 84 chr15 11250553 11250887 -74444867 - HAL1 LINE L1 -2170 337 10 1006 196 47 23 chr15 11251232 11251446 -74444308 + MER20 DNA MER1_type 1 219 0 2319 75 3 0 chr15 11252330 11252635 -74443119 - AluSq SINE Alu -7 306 1 341 64 0 6 chr15 11252856 11252942 -74442812 - AluSp/q SINE Alu 0 317 245 2102 167 33 14 chr15 11253149 11253569 -74442185 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 11255676 11255896 -74439858 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 11256047 11256125 -74439629 + MIR SINE MIR 15 97 -165 195 69 0 0 chr15 11256149 11256178 -74439576 + (TC)n Simple_repeat Simple_repeat 1 29 0 1648 151 52 0 chr15 11258249 11258540 -74437214 + AluJb SINE Alu 1 306 -6 790 320 86 42 chr15 11258637 11259411 -74436343 + L1ME LINE L1 4739 5544 -622 447 277 44 29 chr15 11259439 11259645 -74436109 + L1ME LINE L1 5547 5755 -366 690 193 0 22 chr15 11260194 11260329 -74435425 + FLAM_A SINE Alu 1 132 -1 2286 83 3 0 chr15 11260482 11260784 -74434970 + AluY SINE Alu 1 303 -8 1732 143 10 17 chr15 11261525 11261825 -74433929 - AluJo SINE Alu -14 298 1 195 42 0 0 chr15 11262329 11262353 -74433401 + (A)n Simple_repeat Simple_repeat 1 24 0 474 18 0 0 chr15 11264723 11264778 -74430976 + (TA)n Simple_repeat Simple_repeat 1 55 0 2077 146 193 71 chr15 11264842 11265377 -74430377 - MER7C DNA MER2_type 0 602 3 223 322 110 44 chr15 11265815 11266042 -74429712 + MIR SINE MIR 21 262 0 735 254 225 17 chr15 11267121 11267467 -74428287 - L2 LINE L2 0 3313 2896 27 62 0 0 chr15 11270733 11270781 -74424973 + GC_rich Low_complexity Low_complexity 1 48 0 429 173 53 0 chr15 11270856 11271157 -74424597 + (CCG)n Simple_repeat Simple_repeat 1 316 0 419 143 0 0 chr15 11271311 11271374 -74424380 + L1PA7 LINE L1 6081 6143 -11 30 0 0 0 chr15 11271878 11271908 -74423846 + AT_rich Low_complexity Low_complexity 1 30 0 338 182 136 0 chr15 11272272 11272338 -74423416 + MADE1 DNA Mariner 1 75 -5 1280 188 121 30 chr15 11272382 11272712 -74423042 + MER46B DNA MER2_type 2 236 0 301 240 31 62 chr15 11273147 11273243 -74422511 - L1MC4 LINE L1 -1334 6708 6616 1257 138 14 24 chr15 11273341 11273638 -74422116 - THE1B LTR MaLR 0 364 1 393 308 88 85 chr15 11273913 11274446 -74421308 - L1 LINE L1 -1826 4320 3748 2529 48 3 0 chr15 11274446 11274737 -74421017 - AluY SINE Alu -19 292 1 393 308 88 85 chr15 11274737 11274939 -74420815 - L1 LINE L1 -2398 3748 3548 588 122 11 3 chr15 11275157 11275264 -74420490 - L1MA9 LINE L1 -199 6092 5987 23 108 0 0 chr15 11275563 11275656 -74420098 + AT_rich Low_complexity Low_complexity 1 93 0 354 45 0 0 chr15 11275780 11275824 -74419930 + (TA)n Simple_repeat Simple_repeat 1 44 0 736 224 6 19 chr15 11275914 11276070 -74419684 - MSTD LTR MaLR 0 396 243 520 119 0 48 chr15 11276153 11276237 -74419517 - MSTD LTR MaLR -315 81 2 220 312 65 13 chr15 11277320 11277397 -74418357 + L2 LINE L2 3187 3267 -5 668 280 89 57 chr15 11277418 11277821 -74417933 + L2 LINE L2 2305 2720 -594 2245 254 93 33 chr15 11277863 11278825 -74416929 + L1MEc LINE L1 304 1183 -5034 2416 47 3 3 chr15 11279313 11279609 -74416145 - AluY SINE Alu -15 296 1 209 89 36 36 chr15 11280880 11280936 -74414818 + CT-rich Low_complexity Low_complexity 1 56 0 2746 249 30 82 chr15 11280998 11281505 -74414249 + L1MC4 LINE L1 6635 7056 -986 2425 43 10 7 chr15 11281505 11281810 -74413944 - AluY SINE Alu -5 306 1 2746 249 30 82 chr15 11281810 11282398 -74413356 + L1MC4 LINE L1 7056 7673 -369 2363 26 0 7 chr15 11282985 11283255 -74412499 + AluY SINE Alu 41 308 -3 297 227 39 0 chr15 11284966 11285119 -74410635 + (TTA)n Simple_repeat Simple_repeat 1 158 0 241 300 64 21 chr15 11285435 11285575 -74410179 - L1ME2 LINE L1 -15 6149 6004 315 149 0 0 chr15 11285575 11285649 -74410105 + (TA)n Simple_repeat Simple_repeat 1 74 0 321 311 0 0 chr15 11285649 11285739 -74410015 + L1MC4 LINE L1 6613 6702 -1340 4240 226 52 57 chr15 11285761 11285777 -74409977 - L1ME2 LINE L1 -175 5991 5976 1610 72 0 0 chr15 11285777 11285970 -74409784 - AluSq SINE Alu -51 262 70 4240 226 52 57 chr15 11285970 11288067 -74407687 - L1ME2 LINE L1 -190 5976 3898 2857 25 0 0 chr15 11288219 11288537 -74407217 + AluYb8 SINE Alu 1 318 0 291 154 15 46 chr15 11288857 11288922 -74406832 - L2 LINE L2 -1 3312 3250 21 36 0 0 chr15 11289431 11289459 -74406295 + AT_rich Low_complexity Low_complexity 1 28 0 2297 53 3 3 chr15 11289829 11290137 -74405617 - AluSp SINE Alu 0 308 1 23 0 0 0 chr15 11290986 11291009 -74404745 + AT_rich Low_complexity Low_complexity 1 23 0 1363 39 0 0 chr15 11291009 11291164 -74404590 - L1PA4 LINE L1 -3 6152 5998 5797 77 25 9 chr15 11292341 11293116 -74402638 - L1PA8A LINE L1 -4 6127 5341 3389 252 43 32 chr15 11293674 11294943 -74400811 + L1MC3 LINE L1 3974 5255 -891 1281 114 0 0 chr15 11295047 11295252 -74400502 + AluSg/x SINE Alu 113 317 0 2227 190 15 12 chr15 11295299 11295335 -74400419 + L1 LINE L1 3297 3331 -2815 2288 104 0 0 chr15 11295335 11295643 -74400111 + AluY SINE Alu 1 308 -3 2227 190 15 12 chr15 11295643 11296086 -74399668 + L1 LINE L1 3331 3777 -2369 1548 166 3 21 chr15 11296929 11297213 -74398541 + AluJo SINE Alu 10 288 -24 263 269 24 19 chr15 11297263 11297368 -74398386 + MIR3 SINE MIR 65 170 -38 3680 182 35 89 chr15 11297579 11298171 -74397583 + L1MC3 LINE L1 5281 5903 -1882 2212 103 3 3 chr15 11298171 11298462 -74397292 + AluSg SINE Alu 1 291 -19 3680 182 35 89 chr15 11298462 11298765 -74396989 + L1MC3 LINE L1 5903 6119 -1666 2074 90 11 4 chr15 11298765 11299044 -74396710 + AluSq SINE Alu 1 281 -32 3680 182 35 89 chr15 11299044 11299146 -74396608 + L1MC3 LINE L1 6119 6225 -1560 198 71 0 0 chr15 11299194 11299222 -74396532 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 395 247 0 0 chr15 11299351 11299424 -74396330 + L1MC3 LINE L1 7115 7187 -598 2966 88 21 19 chr15 11299431 11299861 -74395893 + MLT2A1 LTR ERVL 14 444 0 3229 171 22 3 chr15 11299864 11300455 -74395299 + L1MC3 LINE L1 7184 7785 0 335 275 42 35 chr15 11301628 11301770 -74393984 + L2 LINE L2 2621 2763 -551 608 329 71 45 chr15 11301828 11302248 -74393506 - LTR16C LTR ERVL -58 433 3 323 281 21 10 chr15 11302300 11302396 -74393358 - LTR33 LTR ERVL 0 521 425 387 324 34 0 chr15 11302494 11302642 -74393112 - LTR33 LTR ERVL -256 265 113 413 277 8 25 chr15 11302744 11302863 -74392891 + L2 LINE L2 3190 3306 -7 1602 273 36 11 chr15 11303559 11303999 -74391755 + MLT1C LTR MaLR 17 467 0 2351 93 0 3 chr15 11304086 11304388 -74391366 - AluSq SINE Alu -12 301 1 341 304 32 16 chr15 11304654 11304779 -74390975 - L2 LINE L2 -12 3301 3175 205 360 52 33 chr15 11304834 11305140 -74390614 - L2 LINE L2 -534 2780 2469 1229 167 11 61 chr15 11305607 11305870 -74389884 + AluJo SINE Alu 44 293 -19 36 53 0 0 chr15 11306088 11306145 -74389609 + AT_rich Low_complexity Low_complexity 1 57 0 421 192 8 80 chr15 11307539 11307664 -74388090 - AluSq/x SINE Alu -187 125 10 26 50 0 0 chr15 11307786 11307826 -74387928 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 11307870 11307899 -74387855 + AT_rich Low_complexity Low_complexity 1 29 0 1021 171 23 0 chr15 11308081 11308256 -74387498 - L1PA16 LINE L1 -4 6162 5984 2241 119 0 3 chr15 11308456 11308766 -74386988 + AluSc SINE Alu 1 309 0 28 61 0 0 chr15 11309146 11309195 -74386559 + AT_rich Low_complexity Low_complexity 1 49 0 2485 186 166 33 chr15 11309275 11309455 -74386299 + Charlie1a DNA MER1_type 67 222 -2539 1891 147 14 3 chr15 11309455 11309740 -74386014 + AluJb SINE Alu 9 296 -16 2485 186 166 33 chr15 11309740 11310308 -74385446 + Charlie1a DNA MER1_type 222 914 -541 1251 158 0 37 chr15 11310312 11310527 -74385227 + AluJb SINE Alu 87 293 -19 249 57 0 0 chr15 11310529 11310564 -74385190 + (TA)n Simple_repeat Simple_repeat 1 35 0 947 183 245 9 chr15 11310584 11310907 -74384847 + Charlie1a DNA MER1_type 1057 1455 0 2367 95 0 0 chr15 11311381 11311677 -74384077 + AluSq SINE Alu 1 296 -17 241 250 90 30 chr15 11312034 11312134 -74383620 + L1ME4a LINE L1 5972 6077 -44 2191 121 3 0 chr15 11312976 11313281 -74382473 + AluSg SINE Alu 1 306 -4 192 40 0 0 chr15 11313518 11313543 -74382211 + (CA)n Simple_repeat Simple_repeat 2 26 0 1868 137 10 17 chr15 11315151 11315451 -74380303 - AluJo SINE Alu -14 298 1 447 19 0 0 chr15 11318354 11318406 -74377348 + (CA)n Simple_repeat Simple_repeat 1 52 0 2304 157 218 6 chr15 11318407 11318898 -74376856 - MER7C DNA MER2_type -5 597 3 691 257 225 17 chr15 11320634 11320980 -74374774 - L2 LINE L2 0 3313 2896 29 60 0 0 chr15 11324266 11324316 -74371438 + GC_rich Low_complexity Low_complexity 1 50 0 324 305 75 78 chr15 11324698 11325032 -74370722 - L1M2 LINE L1 -5881 968 636 6486 48 8 12 chr15 11326435 11327747 -74368007 + L1PA5 LINE L1 4899 6166 -2 333 380 23 12 chr15 11328078 11328249 -74367505 - MIR SINE MIR 0 262 90 2403 65 19 13 chr15 11328253 11328560 -74367194 - AluY SINE Alu -1 310 2 1968 122 45 50 chr15 11329118 11329495 -74366259 - THE1C LTR MaLR 0 375 1 345 348 39 26 chr15 11329567 11329722 -74366032 - MIR SINE MIR -88 174 18 1883 151 29 26 chr15 11330004 11330315 -74365439 - AluSx SINE Alu 0 312 1 1409 51 0 6 chr15 11330787 11330964 -74364790 + L1PA6 LINE L1 5972 6147 -7 1903 292 39 42 chr15 11331342 11331669 -74364085 + L2 LINE L2 1852 2178 -1136 1156 171 9 48 chr15 11331669 11331897 -74363857 - MER20 DNA MER1_type 0 219 1 1903 292 39 42 chr15 11331897 11332384 -74363370 + L2 LINE L2 2178 2664 -650 210 37 0 0 chr15 11332478 11332505 -74363249 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 2167 123 7 7 chr15 11332588 11332898 -74362856 - AluSg SINE Alu 0 310 1 332 327 18 0 chr15 11332915 11333025 -74362729 + L2 LINE L2 2763 2874 -440 427 295 4 88 chr15 11333157 11333243 -74362511 - L1M4 LINE L1 -1016 5130 5038 1653 74 5 18 chr15 11333243 11333460 -74362294 - AluSp SINE Alu -9 304 91 427 295 4 88 chr15 11333460 11333600 -74362154 - L1M4 LINE L1 -1108 5038 4923 1782 242 73 27 chr15 11333601 11333636 -74362118 - L1M4 LINE L1 -1577 4569 4537 2519 62 0 0 chr15 11333636 11333942 -74361812 - AluY SINE Alu -5 306 1 1782 242 73 27 chr15 11333942 11334655 -74361099 - L1M4 LINE L1 -1609 4537 3786 363 297 51 6 chr15 11334695 11334870 -74360884 + L1ME LINE L1 5509 5691 -430 1560 211 29 29 chr15 11335203 11335577 -74360177 - MLT1A2 LTR MaLR 0 374 1 2155 121 3 6 chr15 11336071 11336384 -74359370 + AluSx SINE Alu 1 312 0 1107 178 123 105 chr15 11336843 11337292 -74358462 - MSTB2 LTR MaLR 0 457 1 198 0 0 0 chr15 11337321 11337343 -74358411 + (TA)n Simple_repeat Simple_repeat 2 23 0 284 250 0 0 chr15 11337343 11337427 -74358327 - L1MC4 LINE L1 -1339 6703 6620 212 152 43 0 chr15 11337452 11337498 -74358256 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 1153 119 161 23 chr15 11337828 11338046 -74357708 - AluSx SINE Alu -64 248 1 21 0 0 0 chr15 11338449 11338470 -74357284 + AT_rich Low_complexity Low_complexity 1 21 0 4432 161 44 27 chr15 11338610 11338776 -74356978 - L1MA8 LINE L1 -4 6287 6125 180 0 0 0 chr15 11338776 11338796 -74356958 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1971 124 3 11 chr15 11338800 11339082 -74356672 - AluSx SINE Alu -32 280 1 4432 161 44 27 chr15 11339082 11339859 -74355895 - L1MA8 LINE L1 -168 6123 5323 430 265 51 0 chr15 11339977 11340094 -74355660 - L2 LINE L2 0 3313 3191 330 271 31 0 chr15 11340943 11341039 -74354715 - LTR33A LTR ERVL -361 162 64 1212 326 55 8 chr15 11341706 11342326 -74353428 - ERVL LTR ERVL -395 5369 4721 24 32 0 0 chr15 11342455 11342486 -74353268 + AT_rich Low_complexity Low_complexity 1 31 0 336 242 97 66 chr15 11342658 11342885 -74352869 - HAL1 LINE L1 0 2507 2274 23 0 0 0 chr15 11343997 11344020 -74351734 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr15 11344047 11344091 -74351663 + AT_rich Low_complexity Low_complexity 1 44 0 2189 128 31 6 chr15 11344795 11345155 -74350599 - L1PA11 LINE L1 -4 6170 5802 3613 93 4 2 chr15 11345257 11345764 -74349990 + L1PA5 LINE L1 5640 6147 -7 303 241 205 0 chr15 11345777 11345889 -74349865 + L1M4 LINE L1 4487 4621 -1525 3228 26 0 0 chr15 11345932 11346310 -74349444 + L1PA5 LINE L1 5770 6147 -7 198 0 0 0 chr15 11346956 11346978 -74348776 + (A)n Simple_repeat Simple_repeat 1 22 0 317 102 17 0 chr15 11348585 11348644 -74347110 + (CCG)n Simple_repeat Simple_repeat 1 60 0 410 284 0 15 chr15 11348684 11348818 -74346936 + (CCG)n Simple_repeat Simple_repeat 3 134 0 5151 101 5 4 chr15 11349370 11350123 -74345631 + L1PA13 LINE L1 5405 6158 -5 1661 111 111 0 chr15 11350331 11350592 -74345162 - AluSg SINE Alu -20 290 1 24 77 0 0 chr15 11352434 11352486 -74343268 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr15 11356897 11356926 -74338828 + AT_rich Low_complexity Low_complexity 1 29 0 1259 303 96 57 chr15 11357843 11358912 -74336842 - L2 LINE L2 0 3313 2183 207 0 0 0 chr15 11359560 11359583 -74336171 + (TC)n Simple_repeat Simple_repeat 1 23 0 237 260 0 0 chr15 11360539 11360589 -74335165 + L2 LINE L2 2271 2320 -994 198 360 36 36 chr15 11360726 11360837 -74334917 + MIR SINE MIR 16 126 -82 4256 177 33 27 chr15 11363403 11364371 -74331383 - L1MC2 LINE L1 -8 6336 5363 1942 117 20 17 chr15 11364426 11364724 -74331030 - AluSx SINE Alu -13 299 1 24 32 0 0 chr15 11365348 11365379 -74330375 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr15 11366417 11366470 -74329284 + AT_rich Low_complexity Low_complexity 1 53 0 229 268 18 0 chr15 11367120 11367176 -74328578 - MIR SINE MIR -2 260 204 241 292 42 42 chr15 11367229 11367301 -74328453 - MIR SINE MIR -169 93 22 294 304 62 88 chr15 11367545 11367805 -74327949 + MIR SINE MIR 3 255 -7 259 182 0 18 chr15 11368063 11368118 -74327636 - MER112 DNA MER1_type -7 253 200 186 43 0 0 chr15 11368253 11368276 -74327478 + (TATG)n Simple_repeat Simple_repeat 2 24 0 212 145 133 24 chr15 11368435 11368518 -74327236 + (TTAAA)n Simple_repeat Simple_repeat 1 92 0 264 77 0 0 chr15 11368555 11368594 -74327160 + (CA)n Simple_repeat Simple_repeat 2 40 0 260 274 24 43 chr15 11368712 11368876 -74326878 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 22 0 0 0 chr15 11370150 11370172 -74325582 + AT_rich Low_complexity Low_complexity 1 22 0 2061 115 3 16 chr15 11370769 11371073 -74324681 - AluSx SINE Alu -12 300 1 243 286 105 0 chr15 11371306 11371411 -74324343 - MIR SINE MIR -56 206 91 187 350 60 10 chr15 11371815 11371915 -74323839 + MER5B DNA MER1_type 24 128 -50 201 244 11 111 chr15 11373662 11373752 -74322002 + L2 LINE L2 3190 3270 -2 311 310 50 0 chr15 11375427 11375527 -74320227 + L1ME LINE L1 5719 5823 -298 206 271 0 34 chr15 11377238 11377297 -74318457 - MIR SINE MIR -63 145 89 216 227 0 0 chr15 11429021 11429065 -74266689 - L2 LINE L2 -209 3063 3020 1015 309 111 38 chr15 11429112 11429763 -74265991 - L2 LINE L2 -720 2594 1897 261 213 33 0 chr15 11429763 11429824 -74265930 - MLT2D LTR ERVL 0 520 458 1674 143 23 27 chr15 11429881 11430181 -74265573 - MLT2D LTR ERVL -50 364 66 525 125 10 10 chr15 11430214 11430310 -74265444 - MLT2D LTR ERVL -318 96 1 245 307 11 0 chr15 11430311 11430399 -74265355 - L2 LINE L2 -1414 1900 1812 555 246 8 0 chr15 11430416 11430534 -74265220 + MER5B DNA MER1_type 7 125 -53 442 211 11 22 chr15 11430600 11430690 -74265064 - MER5A DNA MER1_type -92 97 9 328 341 38 34 chr15 11430684 11430948 -74264806 - L2 LINE L2 -1503 1811 1547 * 277 381 46 55 chr15 11430983 11431350 -74264404 - L2 LINE L2 -353 2961 2598 357 24 0 0 chr15 11431528 11431570 -74264184 + (GA)n Simple_repeat Simple_repeat 2 43 0 351 278 74 14 chr15 11431939 11432115 -74263639 + MIR SINE MIR 15 245 -17 1151 194 29 7 chr15 11432624 11432897 -74262857 + L1MD2 LINE L1 3569 3847 -2299 356 130 0 0 chr15 11432899 11432968 -74262786 + L1MB4 LINE L1 6112 6180 0 4557 215 29 29 chr15 11432969 11434443 -74261311 + L1MD2 LINE L1 4212 5706 -653 1138 73 7 0 chr15 11434443 11434594 -74261160 - L1PA5 LINE L1 -6 6148 5997 4557 215 29 29 chr15 11434594 11435221 -74260533 + L1MD2 LINE L1 5706 6331 -28 2897 195 25 62 chr15 11435233 11435348 -74260406 + L1ME1 LINE L1 5186 5304 -1008 937 178 6 6 chr15 11435348 11435511 -74260243 + FAM SINE Alu 5 167 -8 2897 195 25 62 chr15 11435511 11436403 -74259351 + L1ME1 LINE L1 5304 6288 -24 1744 141 43 7 chr15 11436654 11436931 -74258823 - AluJo SINE Alu -25 287 1 195 42 0 0 chr15 11437088 11437112 -74258642 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 277 43 90 chr15 11438494 11438634 -74257120 - L2 LINE L2 -101 3212 3082 1678 134 52 4 chr15 11438634 11438903 -74256851 - AluJo SINE Alu -20 292 11 259 277 43 90 chr15 11438903 11438950 -74256804 - L2 LINE L2 -231 3082 3034 527 278 82 12 chr15 11439265 11439520 -74256234 - Charlie7 DNA MER1_type -1912 700 428 398 256 73 22 chr15 11440678 11440815 -74254939 - MLT1L LTR MaLR -337 278 135 1626 143 13 57 chr15 11440869 11441169 -74254585 + AluJb SINE Alu 1 287 -25 235 298 81 40 chr15 11441283 11441407 -74254347 - L2 LINE L2 -241 3031 2903 251 170 0 0 chr15 11442932 11442979 -74252775 + MER4B-int LTR ERV1 1150 1196 -5562 1898 146 0 3 chr15 11443004 11443291 -74252463 - AluJb SINE Alu -26 286 1 756 217 133 4 chr15 11444087 11444313 -74251441 + MLT1L LTR MaLR 357 611 -4 303 323 49 61 chr15 11444645 11444809 -74250945 + MIR SINE MIR 66 227 -35 374 183 0 75 chr15 11445044 11445137 -74250617 - MER103 DNA DNA -70 96 11 338 330 75 64 chr15 11445221 11445688 -74250066 + L2 LINE L2 2429 2900 -414 331 284 19 65 chr15 11447039 11447194 -74248560 - MIR3 SINE MIR -1 207 60 223 396 27 9 chr15 11447678 11447789 -74247965 + L2 LINE L2 3132 3244 -28 282 274 76 3 chr15 11447790 11447943 -74247811 + MER63A DNA MER1_type 2 210 0 755 345 24 23 chr15 11448343 11448844 -74246910 - L2 LINE L2 -226 3046 2551 180 214 0 0 chr15 11448868 11448910 -74246844 - L2 LINE L2 -887 2427 2386 851 288 130 39 chr15 11448939 11449484 -74246270 - L2 LINE L2 -1190 2124 1530 509 297 78 18 chr15 11449788 11450007 -74245747 - L2 LINE L2 -1789 1525 1294 317 243 14 0 chr15 11450320 11450394 -74245360 + MER5C DNA MER1_type 1 75 -249 482 254 66 55 chr15 11450579 11450835 -74244919 - MER112 DNA MER1_type 0 260 2 474 191 59 29 chr15 11451266 11451402 -74244352 - MER53 DNA DNA 0 189 50 * 504 102 110 25 chr15 11451399 11451517 -74244237 - MER53 DNA DNA -61 128 1 265 125 0 71 chr15 11451528 11451584 -74244170 - MER69 DNA AcHobo -29 2497 2446 * 432 273 14 7 chr15 11451577 11451720 -74244034 - MER69 DNA AcHobo -1079 147 4 214 179 26 0 chr15 11451880 11451919 -74243835 + GA-rich Low_complexity Low_complexity 4 43 0 275 311 13 7 chr15 11451925 11452076 -74243678 + Charlie2 DNA MER1_type 129 280 -2582 574 212 42 16 chr15 11452254 11452447 -74243307 + Charlie2a DNA MER1_type 1465 1662 -1200 1094 157 10 29 chr15 11452529 11452733 -74243021 + AluJo SINE Alu 1 200 -112 204 40 0 0 chr15 11452733 11452758 -74242996 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 235 327 153 0 chr15 11453777 11453927 -74241827 + MIR SINE MIR 88 260 -2 2114 194 33 98 chr15 11454840 11455506 -74240248 + MER63C DNA MER1_type 1 623 -307 890 110 0 0 chr15 11455507 11455625 -74240129 + AluSc SINE Alu 186 303 -6 732 162 112 20 chr15 11455627 11455824 -74239930 + MER63C DNA MER1_type 617 831 -99 434 72 0 14 chr15 11455825 11455894 -74239860 - Alu SINE Alu -7 305 238 807 176 0 8 chr15 11455914 11456039 -74239715 - FLAM_C SINE Alu -19 124 1 295 257 40 10 chr15 11456039 11456140 -74239614 + MER63C DNA MER1_type 823 926 -4 390 305 61 12 chr15 11456261 11456425 -74239329 + MLT1L LTR MaLR 153 324 -291 2216 116 13 0 chr15 11456741 11457043 -74238711 + AluSx SINE Alu 1 306 -6 781 297 38 4 chr15 11457075 11457314 -74238440 + MIR SINE MIR 15 261 -1 320 0 0 24 chr15 11457501 11457542 -74238212 + (TTG)n Simple_repeat Simple_repeat 2 41 0 590 328 96 63 chr15 11457917 11458409 -74237345 + L2 LINE L2 2523 3028 -285 317 339 23 39 chr15 11458463 11458593 -74237161 + L2 LINE L2 3185 3312 -1 441 81 0 0 chr15 11458651 11458713 -74237041 + (CA)n Simple_repeat Simple_repeat 1 62 0 26 0 0 0 chr15 11458720 11458746 -74237008 + AT_rich Low_complexity Low_complexity 1 26 0 1311 241 59 14 chr15 11458777 11459423 -74236331 - L1MEc LINE L1 -2875 3340 2622 1731 148 96 42 chr15 11459458 11459520 -74236234 - LTR47A LTR ERVL -46 406 349 2438 65 0 31 chr15 11459520 11459841 -74235913 + AluY SINE Alu 1 311 0 1731 148 96 42 chr15 11459841 11460163 -74235591 - LTR47A LTR ERVL -103 349 1 2436 244 48 28 chr15 11460166 11460917 -74234837 - L1MEc LINE L1 -3612 2603 1869 1772 187 42 34 chr15 11460917 11461302 -74234452 + MLT1B LTR MaLR 1 388 -2 2436 244 48 28 chr15 11461302 11461444 -74234310 - L1MEc LINE L1 -4346 1869 1731 2798 93 0 0 chr15 11461444 11461808 -74233946 + THE1B LTR MaLR 1 364 0 2436 244 48 28 chr15 11461808 11462055 -74233699 - L1MEc LINE L1 -4484 1731 1477 793 53 26 0 chr15 11462056 11462170 -74233584 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 621 238 91 27 chr15 11462265 11462465 -74233289 + MIR SINE MIR 13 211 -51 354 263 63 33 chr15 11462525 11462854 -74232900 - LTR67 LTR ERVL -29 528 151 3171 158 140 3 chr15 11463206 11463828 -74231926 - MER39 LTR ERV1 0 707 1 22 0 0 0 chr15 11465397 11465419 -74230335 + AT_rich Low_complexity Low_complexity 1 22 0 491 296 169 5 chr15 11465424 11465637 -74230117 - MIR SINE MIR -11 251 4 6002 86 19 14 chr15 11465793 11466895 -74228859 + L1PA14 LINE L1 5051 6156 -5 2444 68 0 16 chr15 11467026 11467336 -74228418 - AluY SINE Alu -2 309 5 260 196 20 0 chr15 11467582 11467633 -74228121 - L2 LINE L2 0 3313 3262 2450 145 97 31 chr15 11468692 11469238 -74226516 + MER34C LTR ERV1 1 582 -3 2272 148 16 0 chr15 11469440 11469826 -74225928 - MER57A LTR ERV1 -11 392 1 191 229 0 0 chr15 11470277 11470312 -74225442 - L2 LINE L2 -16 3297 3263 1450 153 80 4 chr15 11470497 11470746 -74225008 - AluJo SINE Alu -44 268 1 186 348 79 11 chr15 11470870 11470959 -74224795 - MIR3 SINE MIR -7 201 107 2175 109 0 10 chr15 11470964 11471266 -74224488 - AluSx SINE Alu -13 299 1 192 293 81 40 chr15 11472511 11472610 -74223144 - MIR SINE MIR -63 145 43 402 162 0 0 chr15 11472695 11472769 -74222985 + CT-rich Low_complexity Low_complexity 3 76 0 1340 165 81 84 chr15 11472773 11473070 -74222684 - AluJo SINE Alu -16 296 1 352 214 12 0 chr15 11474281 11474365 -74221389 + FAM SINE Alu 85 169 -6 323 229 9 73 chr15 11475675 11475784 -74219970 + L1ME4a LINE L1 5944 6045 -76 1677 174 4 4 chr15 11475835 11476105 -74219649 + AluJb SINE Alu 1 270 -42 243 0 0 0 chr15 11476105 11476132 -74219622 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 180 348 0 0 chr15 11478225 11478271 -74217483 - L2 LINE L2 -6 3307 3262 222 229 0 0 chr15 11478314 11478362 -74217392 - L2 LINE L2 -3 3310 3263 225 354 56 13 chr15 11478612 11478750 -74217004 - MIR SINE MIR -58 150 40 195 42 0 0 chr15 11479694 11479718 -74216036 + (A)n Simple_repeat Simple_repeat 1 24 0 192 77 0 0 chr15 11481885 11481911 -74213843 + (TC)n Simple_repeat Simple_repeat 2 27 0 255 227 136 0 chr15 11481979 11482045 -74213709 - MIR SINE MIR -80 128 54 210 37 0 0 chr15 11482309 11482336 -74213418 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 83 0 0 chr15 11483791 11483827 -74211927 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 627 184 0 142 chr15 11483993 11484059 -74211695 - MIR SINE MIR 0 262 188 1402 149 50 4 chr15 11484059 11484340 -74211414 - L1MB3 LINE L1 0 6183 5890 627 184 0 142 chr15 11484340 11484463 -74211291 - MIR SINE MIR -74 188 100 297 211 66 0 chr15 11485707 11485783 -74209971 - L1MA9 LINE L1 -5 6307 6227 2242 119 3 0 chr15 11485951 11486263 -74209491 - AluSq SINE Alu 0 313 1 425 353 95 22 chr15 11487958 11488190 -74207564 - MIR SINE MIR -13 249 1 312 263 13 0 chr15 11489027 11489103 -74206651 - MER5A DNA MER1_type -103 86 10 281 295 93 58 chr15 11489363 11489502 -74206252 + MER5B DNA MER1_type 2 145 -33 2074 179 69 18 chr15 11489794 11490229 -74205525 - MLT2B1 LTR ERVL -63 457 1 2158 109 3 0 chr15 11490348 11490631 -74205123 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr15 11490632 11490654 -74205100 + AT_rich Low_complexity Low_complexity 1 22 0 540 116 0 0 chr15 11491181 11491267 -74204487 + L1MA9 LINE L1 5940 6025 -287 2241 109 7 0 chr15 11491290 11491593 -74204161 + AluSg SINE Alu 3 307 -3 185 211 53 0 chr15 11492110 11492148 -74203606 + MIR SINE MIR 196 235 -27 217 300 58 67 chr15 11492336 11492400 -74203354 + L2 LINE L2 3154 3218 -54 985 193 14 5 chr15 11492400 11492607 -74203147 + MER3 DNA MER1_type 1 209 0 217 300 58 67 chr15 11492607 11492662 -74203092 + L2 LINE L2 3218 3272 0 1692 162 0 88 chr15 11493287 11493626 -74202128 - AluJb SINE Alu -3 309 1 1379 178 66 3 chr15 11493887 11494173 -74201581 + L1MB4 LINE L1 5862 6165 -15 223 353 95 9 chr15 11494596 11494712 -74201042 - L3b LINE CR1 -14 1569 1444 1824 164 3 3 chr15 11494730 11495023 -74200731 - AluJb SINE Alu -19 293 1 1793 247 104 14 chr15 11495224 11495799 -74199955 - MLT2E LTR ERVL -1 627 1 2156 64 0 48 chr15 11496265 11496589 -74199165 + AluY SINE Alu 1 310 0 1989 149 0 7 chr15 11496812 11497108 -74198646 + AluJo SINE Alu 1 294 -18 3311 155 17 38 chr15 11497705 11498457 -74197297 - L1MA4 LINE L1 0 6171 5400 390 299 85 23 chr15 11499728 11499905 -74195849 + MIR SINE MIR 52 239 -23 227 111 0 44 chr15 11500929 11500974 -74194780 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 470 296 5 70 chr15 11501059 11501272 -74194482 + MIR SINE MIR 3 201 -61 254 320 144 0 chr15 11501289 11501386 -74194368 - MIR SINE MIR -69 139 29 1230 278 51 35 chr15 11501433 11501926 -74193828 + MLT1K LTR MaLR 16 516 -72 745 295 32 0 chr15 11502330 11502547 -74193207 - MIR SINE MIR -3 259 36 973 145 0 0 chr15 11502668 11502806 -74192948 - FAM SINE Alu -19 166 29 432 227 98 23 chr15 11502925 11503057 -74192697 + MIR SINE MIR 85 226 -36 243 88 0 0 chr15 11503059 11503093 -74192661 + (CAT)n Simple_repeat Simple_repeat 2 35 0 189 107 0 0 chr15 11503218 11503246 -74192508 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 247 223 53 53 chr15 11504353 11504447 -74191307 - HAL1b LINE L1 -3 1345 1252 490 231 148 14 chr15 11504599 11504815 -74190939 - L1ME LINE L1 -315 5806 5562 1565 152 80 7 chr15 11504816 11505092 -74190662 - AluJo SINE Alu -16 296 1 183 298 0 0 chr15 11505138 11505185 -74190569 - MIR SINE MIR -138 124 78 1234 224 32 4 chr15 11506264 11506541 -74189213 + AluSx SINE Alu 1 285 -27 215 288 123 71 chr15 11507244 11507414 -74188340 - MER5A DNA MER1_type -2 187 9 293 336 67 34 chr15 11507686 11507835 -74187919 + MER5A DNA MER1_type 29 182 -7 1874 148 3 13 chr15 11509042 11509352 -74186402 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 11509537 11509579 -74186175 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 1469 122 5 0 chr15 11509579 11509776 -74185978 - AluSg/x SINE Alu -32 280 83 252 306 57 64 chr15 11510244 11510401 -74185353 - MIR SINE MIR -19 243 88 184 260 49 98 chr15 11510641 11510764 -74184990 + L2 LINE L2 3156 3272 0 2099 106 0 3 chr15 11511772 11512087 -74183667 + AluSx SINE Alu 1 314 0 4063 186 13 30 chr15 11512091 11513007 -74182747 - Tigger1 DNA MER2_type -357 2061 1161 2432 93 3 0 chr15 11513909 11514220 -74181534 - AluSx SINE Alu 0 312 1 774 284 36 25 chr15 11514275 11514553 -74181201 + ERVL LTR ERVL 4873 5153 -611 198 397 0 0 chr15 11514708 11514786 -74180968 + L2 LINE L2 3220 3297 -16 23 0 0 0 chr15 11514955 11514978 -74180776 + AT_rich Low_complexity Low_complexity 1 23 0 622 312 119 0 chr15 11515163 11515432 -74180322 + LTR33A LTR ERVL 223 523 0 21 0 0 0 chr15 11515860 11515881 -74179873 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 11516161 11516191 -74179563 + AT_rich Low_complexity Low_complexity 1 30 0 2287 126 0 0 chr15 11516240 11516550 -74179204 + AluSx SINE Alu 1 310 -2 675 292 18 4 chr15 11517623 11517897 -74177857 - HAL1 LINE L1 -293 2214 1937 1241 244 62 5 chr15 11517972 11518357 -74177397 - HAL1 LINE L1 -713 1794 1388 362 244 120 81 chr15 11518389 11518647 -74177107 - HAL1 LINE L1 -1882 625 358 404 219 67 55 chr15 11518656 11518820 -74176934 - LTR45B LTR ERV1 0 489 324 2218 112 0 0 chr15 11519304 11519600 -74176154 - AluSx SINE Alu -16 296 1 222 91 0 0 chr15 11519637 11519670 -74176084 + (A)n Simple_repeat Simple_repeat 1 33 0 3028 211 51 12 chr15 11519672 11520878 -74174876 + L1MC4a LINE L1 4407 5656 -510 883 233 0 58 chr15 11520893 11521206 -74174548 + L1ME1 LINE L1 5870 6164 -2 380 274 10 10 chr15 11522102 11522204 -74173550 - MER5A DNA MER1_type -6 183 82 202 301 6 14 chr15 11522889 11522961 -74172793 + MER5B DNA MER1_type 24 107 -82 391 234 109 30 chr15 11523257 11523458 -74172296 + L1MC4a LINE L1 5855 6071 -1737 670 231 63 89 chr15 11523599 11523868 -74171886 + MIR SINE MIR 1 262 0 1029 108 0 0 chr15 11523881 11524011 -74171743 - AluJo SINE Alu -178 134 5 240 175 0 0 chr15 11524843 11524883 -74170871 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 195 266 62 62 chr15 11524913 11524977 -74170777 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 11525889 11525911 -74169843 + AT_rich Low_complexity Low_complexity 1 22 0 342 360 32 8 chr15 11526208 11526333 -74169421 + L2 LINE L2 3143 3270 -2 3210 148 36 8 chr15 11526784 11527394 -74168360 + L1MB8 LINE L1 5552 6178 0 290 230 56 56 chr15 11529135 11529261 -74166493 + L2 LINE L2 3124 3249 -64 1624 187 0 0 chr15 11529403 11529676 -74166078 + AluJb SINE Alu 40 312 0 762 254 243 6 chr15 11531060 11531402 -74164352 + L2 LINE L2 2863 3285 -28 381 311 85 12 chr15 11532166 11532330 -74163424 - MIR SINE MIR -64 198 23 2249 66 42 7 chr15 11532399 11532685 -74163069 + AluY SINE Alu 1 296 -15 215 175 0 0 chr15 11533699 11533739 -74162015 + MIR SINE MIR 153 192 -70 467 316 101 5 chr15 11534512 11534721 -74161033 + L3 LINE CR1 1347 1575 -2 206 286 0 0 chr15 11535025 11535067 -74160687 + polypurine Low_complexity Low_complexity 6 47 0 555 264 80 10 chr15 11535177 11535378 -74160376 - MIR SINE MIR -18 244 30 204 345 0 0 chr15 11535354 11535412 -74160342 + L2 LINE L2 3215 3272 0 * 204 40 0 0 chr15 11536547 11536572 -74159182 + (CA)n Simple_repeat Simple_repeat 2 26 0 621 227 0 8 chr15 11536624 11536743 -74159011 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr15 11536748 11536768 -74158986 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 469 271 115 71 chr15 11536919 11537187 -74158567 + L1ME4a LINE L1 5561 5816 -305 1891 154 17 0 chr15 11537187 11537480 -74158274 - AluSx SINE Alu -14 298 1 469 271 115 71 chr15 11537480 11537705 -74158049 + L1ME4a LINE L1 5816 6076 -45 204 261 0 0 chr15 11538353 11538399 -74157355 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2382 70 3 7 chr15 11538526 11538825 -74156929 - AluY SINE Alu -13 298 1 181 191 127 32 chr15 11539571 11539634 -74156120 + MIR3 SINE MIR 10 78 -130 239 306 57 64 chr15 11540197 11540354 -74155400 + MIR SINE MIR 88 243 -19 850 210 6 25 chr15 11541058 11541220 -74154534 + AluJb SINE Alu 136 294 -18 270 0 0 0 chr15 11541992 11542022 -74153732 + (A)n Simple_repeat Simple_repeat 1 30 0 297 0 0 0 chr15 11542022 11542055 -74153699 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 414 0 0 0 chr15 11542054 11542100 -74153654 + (GA)n Simple_repeat Simple_repeat 2 47 0 309 300 0 0 chr15 11543539 11543619 -74152135 - MER5B DNA MER1_type -50 128 49 363 286 7 50 chr15 11543783 11543923 -74151831 - MER94 DNA DNA 0 134 1 2126 114 51 102 chr15 11543955 11544366 -74151388 + MLT1B LTR MaLR 1 390 0 201 347 13 53 chr15 11544746 11544896 -74150858 - L2 LINE L2 -181 3091 2948 283 343 17 41 chr15 11544976 11545148 -74150606 - L3b LINE CR1 -237 1346 1179 214 256 0 0 chr15 11545198 11545241 -74150513 + (CA)n Simple_repeat Simple_repeat 2 44 0 961 226 67 0 chr15 11546154 11546349 -74149405 - MER3 DNA MER1_type -1 208 1 186 103 0 0 chr15 11547177 11547206 -74148548 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chr15 11547758 11547787 -74147967 + (A)n Simple_repeat Simple_repeat 1 29 0 322 359 8 15 chr15 11553167 11553298 -74142456 + MER5B DNA MER1_type 12 141 -37 210 373 59 13 chr15 11553344 11553497 -74142257 - MIR3 SINE MIR -16 192 33 882 227 6 17 chr15 11556489 11556665 -74139089 + MER5B DNA MER1_type 2 175 -3 659 281 108 67 chr15 11557771 11558426 -74137328 - L2 LINE L2 0 3313 2631 15264 136 22 26 chr15 11558463 11558575 -74137179 - Tigger1 DNA MER2_type 0 2418 2307 1649 181 7 0 chr15 11558575 11558889 -74136865 + AluJo SINE Alu 1 316 0 15264 136 22 26 chr15 11558889 11559140 -74136614 - Tigger1 DNA MER2_type -111 2307 2057 2092 115 0 7 chr15 11559140 11559456 -74136298 + AluSx SINE Alu 1 314 0 15264 136 22 26 chr15 11559456 11560932 -74134822 - Tigger1 DNA MER2_type -361 2057 585 2282 77 0 17 chr15 11560932 11561231 -74134523 - AluSc SINE Alu -15 294 1 15264 136 22 26 chr15 11561231 11561814 -74133940 - Tigger1 DNA MER2_type -1833 585 1 306 259 118 15 chr15 11562446 11562581 -74133173 + MARNA DNA Mariner 134 282 -304 473 277 54 12 chr15 11562756 11562922 -74132832 + MARNA DNA Mariner 307 479 -107 2815 13 0 0 chr15 11563193 11563499 -74132255 - AluYb8 SINE Alu -12 306 1 811 278 18 21 chr15 11564072 11564533 -74131221 + LTR33 LTR ERVL 12 521 0 191 325 192 35 chr15 11564893 11565096 -74130658 + L2 LINE L2 2810 3044 -269 539 312 102 59 chr15 11565235 11565925 -74129829 + L2 LINE L2 2538 3267 -5 1131 160 29 29 chr15 11566118 11566324 -74129430 - L1PB4 LINE L1 -1 6155 5950 416 260 203 20 chr15 11566356 11566545 -74129209 + MIR SINE MIR 34 255 -7 298 330 10 7 chr15 11566706 11566831 -74128923 - MIR SINE MIR -63 145 25 869 268 48 36 chr15 11566951 11567365 -74128389 - HAL1 LINE L1 -231 2276 1858 1934 246 154 58 chr15 11567383 11568280 -74127474 - HAL1 LINE L1 -766 1741 759 762 176 52 7 chr15 11568311 11568464 -74127290 + MER20 DNA MER1_type 58 217 -2 1463 277 97 15 chr15 11568501 11569139 -74126615 - HAL1 LINE L1 -1790 717 1 380 157 29 0 chr15 11570725 11570795 -74124959 - MLT1A2 LTR MaLR -4 370 299 563 239 113 50 chr15 11572278 11572500 -74123254 + L1ME2 LINE L1 5920 6155 -9 1918 183 133 14 chr15 11572646 11573089 -74122665 + LTR54B LTR ERV1 1 496 -2 737 181 10 57 chr15 11573250 11573443 -74122311 + L1MB8 LINE L1 5992 6175 -3 1113 123 13 0 chr15 11573747 11573942 -74121812 - AluSg/x SINE Alu 0 324 128 2094 96 23 23 chr15 11573944 11574245 -74121509 - AluSx SINE Alu -11 301 1 335 281 144 0 chr15 11574350 11574489 -74121265 - MLT1I LTR MaLR -6 403 245 1685 158 3 50 chr15 11574530 11574847 -74120907 - AluJb SINE Alu 0 312 11 27 0 0 0 chr15 11574920 11574947 -74120807 + AT_rich Low_complexity Low_complexity 1 27 0 356 237 20 13 chr15 11575701 11575853 -74119901 + (TA)n Simple_repeat Simple_repeat 2 154 0 8823 164 27 15 chr15 11575960 11578501 -74117253 - L1PA16 LINE L1 -11 6155 3586 2952 161 51 0 chr15 11578521 11579029 -74116725 + LTR51 LTR ERV1 138 671 0 298 250 0 50 chr15 11579796 11579896 -74115858 + LTR67 LTR ERVL 456 550 -7 320 347 0 21 chr15 11580779 11580874 -74114880 - MIR SINE MIR -90 118 26 2779 125 49 2 chr15 11581051 11581460 -74114294 + MSTA LTR MaLR 1 428 0 234 246 46 15 chr15 11582793 11582858 -74112896 + MLT1K LTR MaLR 253 319 -269 1722 162 95 40 chr15 11582893 11582944 -74112810 - MLT1B LTR MaLR 0 390 343 3079 74 3 13 chr15 11582944 11583323 -74112431 - THE1C LTR MaLR 0 375 1 1722 162 95 40 chr15 11583323 11583641 -74112113 - MLT1B LTR MaLR -47 343 1 21 57 0 0 chr15 11583875 11583910 -74111844 + AT_rich Low_complexity Low_complexity 1 35 0 227 357 36 9 chr15 11584537 11584649 -74111105 + L2 LINE L2 3154 3268 -4 273 311 33 16 chr15 11584817 11584939 -74110815 + MIR SINE MIR 19 142 -66 22 56 0 0 chr15 11586539 11586575 -74109179 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 11587112 11587162 -74108592 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 57 0 0 chr15 11591236 11591271 -74104483 + GC_rich Low_complexity Low_complexity 1 35 0 315 259 9 2 chr15 11592385 11592530 -74103224 + MER5A DNA MER1_type 4 189 0 384 271 42 42 chr15 11593086 11593230 -74102524 + MIR SINE MIR 36 179 -83 226 302 266 0 chr15 11593357 11593496 -74102258 - L2 LINE L2 -1 3271 3096 1454 173 0 114 chr15 11594032 11594384 -74101370 - AluJo SINE Alu 0 312 1 522 188 10 0 chr15 11594611 11594712 -74101042 - L1MB2 LINE L1 0 6171 6070 287 306 35 12 chr15 11594820 11594905 -74100849 - MIR SINE MIR -164 98 12 257 344 10 10 chr15 11594939 11595035 -74100719 + MER5A DNA MER1_type 7 102 -87 2115 110 45 0 chr15 11596039 11596330 -74099424 - AluSx SINE Alu -6 306 3 829 141 7 30 chr15 11596938 11597073 -74098681 - AluJb SINE Alu -179 133 2 182 192 19 0 chr15 11597425 11597477 -74098277 + T-rich Low_complexity Low_complexity 2 54 0 1809 172 7 3 chr15 11597662 11597964 -74097790 + AluJb SINE Alu 1 303 -9 23 33 0 0 chr15 11598672 11598702 -74097052 + AT_rich Low_complexity Low_complexity 1 30 0 281 257 0 29 chr15 11600555 11600625 -74095129 - L2 LINE L2 0 3313 3246 219 333 0 0 chr15 11600951 11601002 -74094752 - L2 LINE L2 -5 3267 3217 202 221 263 11 chr15 11601464 11601559 -74094195 - L3b LINE CR1 -216 1367 1249 1133 308 49 39 chr15 11602005 11602622 -74093132 + L1MDa LINE L1 20 642 -5898 4896 48 17 2 chr15 11602887 11603905 -74091849 - MER11A LTR ERVK 0 1266 1 4881 203 72 53 chr15 11603953 11604565 -74091189 + L1MDa LINE L1 872 1471 -5069 1879 173 3 3 chr15 11604565 11604877 -74090877 + AluJb SINE Alu 1 312 0 4881 203 72 53 chr15 11604877 11605737 -74090017 + L1MDa LINE L1 1471 2372 -4168 1729 213 79 37 chr15 11605739 11606167 -74089587 + L1MD2 LINE L1 5902 6347 -12 637 199 128 26 chr15 11607031 11607187 -74088567 - MER5B DNA MER1_type -6 172 1 912 229 6 0 chr15 11607199 11607374 -74088380 - MER5A DNA MER1_type -4 185 10 308 328 38 8 chr15 11607497 11607628 -74088126 + MIR SINE MIR 43 177 -85 1914 125 0 0 chr15 11607652 11607908 -74087846 - AluSx SINE Alu -55 257 2 714 244 88 19 chr15 11607938 11608143 -74087611 - MIR SINE MIR -41 221 3 261 298 161 37 chr15 11608300 11608461 -74087293 + MER5A DNA MER1_type 1 181 -8 2923 141 50 23 chr15 11608692 11609169 -74086585 + LTR2B LTR ERV1 1 490 0 273 29 0 0 chr15 11609336 11609370 -74086384 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 312 48 0 0 chr15 11609695 11609737 -74086017 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 280 74 45 chr15 11610218 11610569 -74085185 + L1ME LINE L1 921 1322 -5074 2032 135 7 0 chr15 11610569 11610858 -74084896 + AluSx SINE Alu 1 291 -21 533 280 74 45 chr15 11610858 11611024 -74084730 + L1ME LINE L1 1322 1482 -4914 1176 249 93 19 chr15 11611100 11611756 -74083998 + L1ME LINE L1 1935 2599 -3616 1668 269 98 55 chr15 11611835 11612955 -74082799 + L1ME LINE L1 2705 3872 -2343 1987 273 98 7 chr15 11613025 11613882 -74081872 + L1ME LINE L1 4602 5544 -689 216 0 0 0 chr15 11614022 11614046 -74081708 + (A)n Simple_repeat Simple_repeat 1 24 0 312 354 57 21 chr15 11615858 11616050 -74079704 - L2 LINE L2 -208 3064 2866 203 312 54 0 chr15 11616350 11616443 -74079311 + L2 LINE L2 1254 1351 -1963 1175 177 0 58 chr15 11616558 11616784 -74078970 - AluJb SINE Alu -14 298 86 529 191 118 0 chr15 11616900 11617010 -74078744 + MER63 DNA MER1_type 1 749 -87 348 296 178 20 chr15 11617440 11617592 -74078162 - MER5A DNA MER1_type 0 189 14 502 259 117 44 chr15 11618105 11618310 -74077444 + MIR SINE MIR 17 236 -26 1965 133 3 7 chr15 11618339 11618639 -74077115 + AluSx SINE Alu 1 299 -13 396 277 30 0 chr15 11618639 11618740 -74077014 + MIR SINE MIR 100 203 -59 288 325 119 86 chr15 11618960 11619260 -74076494 + L2 LINE L2 2831 3151 -121 723 207 75 17 chr15 11619260 11619434 -74076320 + MER5A DNA MER1_type 5 188 -1 288 325 119 86 chr15 11619434 11619561 -74076193 + L2 LINE L2 3151 3272 0 224 379 11 11 chr15 11619702 11619797 -74075957 - L2 LINE L2 -494 2820 2726 466 167 0 0 chr15 11621281 11621359 -74074395 + MER89 LTR ERV1 1 78 -481 * 2137 154 36 3 chr15 11621353 11621716 -74074038 + MER89 LTR ERV1 183 557 -2 294 57 0 0 chr15 11622641 11622676 -74073078 + U2 snRNA snRNA 1 35 -153 855 198 6 6 chr15 11622689 11622846 -74072908 + FRAM SINE Alu 1 157 -19 1504 61 0 0 chr15 11623162 11623343 -74072411 + L1PA8 LINE L1 5990 6170 -2 23 0 0 0 chr15 11623622 11623645 -74072109 + AT_rich Low_complexity Low_complexity 1 23 0 246 219 0 0 chr15 11624073 11624137 -74071617 + CT-rich Low_complexity Low_complexity 1 64 0 342 0 0 0 chr15 11624148 11624186 -74071568 + (CAT)n Simple_repeat Simple_repeat 1 38 0 328 261 45 40 chr15 11625027 11625203 -74070551 + L1MEd LINE L1 23 199 -5920 2792 203 54 76 chr15 11625311 11625545 -74070209 - L1ME2 LINE L1 -32 6132 5894 754 177 0 16 chr15 11625545 11625669 -74070085 + FLAM_C SINE Alu 2 123 -10 2792 203 54 76 chr15 11625669 11626335 -74069419 - L1ME2 LINE L1 -270 5894 5279 1716 151 21 7 chr15 11626335 11626620 -74069134 - AluJo SINE Alu -23 289 1 2792 203 54 76 chr15 11626620 11627272 -74068482 - L1ME2 LINE L1 -885 5279 4614 819 167 0 0 chr15 11627283 11627403 -74068351 + FLAM_C SINE Alu 5 124 -19 2786 229 40 24 chr15 11627437 11628242 -74067512 - L1ME2 LINE L1 -1540 4606 3789 2524 62 0 3 chr15 11628355 11628659 -74067095 + AluY SINE Alu 1 303 -8 1888 219 14 8 chr15 11628839 11629200 -74066554 - MLT1A1 LTR MaLR 0 365 3 6741 225 42 4 chr15 11629387 11631944 -74063810 + L1P LINE L1 2452 5120 -1026 21 0 0 0 chr15 11632050 11632071 -74063683 + AT_rich Low_complexity Low_complexity 1 21 0 2250 109 20 0 chr15 11632124 11632428 -74063326 + AluSx SINE Alu 1 310 -2 208 254 0 36 chr15 11632838 11632893 -74062861 - L3 LINE CR1 -5 1572 1520 519 309 72 45 chr15 11633869 11634092 -74061662 + MIR SINE MIR 23 251 -11 769 182 0 16 chr15 11634119 11634428 -74061326 + (CACCAT)n Simple_repeat Simple_repeat 1 304 0 497 309 99 0 chr15 11634925 11635106 -74060648 - MIR SINE MIR 0 262 64 214 267 186 23 chr15 11635232 11635404 -74060350 - L2 LINE L2 -213 3059 2860 806 145 145 27 chr15 11635931 11636117 -74059637 - MER3 DNA MER1_type 0 209 2 383 307 26 0 chr15 11636433 11636586 -74059168 + L2 LINE L2 2867 3023 -290 28 48 0 0 chr15 11637790 11637832 -74057922 + AT_rich Low_complexity Low_complexity 1 42 0 286 261 176 18 chr15 11638058 11638179 -74057575 + MIR SINE MIR 8 147 -107 290 259 37 15 chr15 11638843 11638978 -74056776 + L1MDb LINE L1 1145 1282 -5127 591 291 64 33 chr15 11639004 11639046 -74056708 + L1MDb LINE L1 1591 1630 -4957 2077 128 10 10 chr15 11639046 11639351 -74056403 + AluSx SINE Alu 1 305 -7 591 291 64 33 chr15 11639351 11639700 -74056054 + L1MDb LINE L1 1630 1994 -4593 2246 79 14 3 chr15 11639765 11640057 -74055697 + AluSq SINE Alu 1 295 -18 884 256 103 18 chr15 11640147 11640729 -74055025 + L1MDb LINE L1 2189 2796 -3610 1466 203 98 33 chr15 11640735 11641134 -74054620 + LTR40c LTR ERVL 36 460 -5 945 228 55 44 chr15 11641139 11641503 -74054251 + L1MDb LINE L1 2481 2848 -3558 243 210 64 115 chr15 11641518 11641675 -74054079 + L1MDb LINE L1 2821 2969 -3437 1604 174 15 8 chr15 11641756 11642021 -74053733 - AluJb SINE Alu -45 267 1 2474 87 0 0 chr15 11642085 11642395 -74053359 - AluSx SINE Alu -2 310 1 241 111 111 0 chr15 11642418 11642463 -74053291 - L1MB5 LINE L1 -9 6165 6116 * 501 182 8 33 chr15 11642449 11642570 -74053184 - L1MB5 LINE L1 -9 6165 6048 464 188 50 0 chr15 11642585 11642686 -74053068 + L1MDb LINE L1 3148 3253 -3153 732 250 32 86 chr15 11642740 11642962 -74052792 + L1MDb LINE L1 3653 3885 -2521 207 0 0 0 chr15 11642962 11642985 -74052769 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2110 125 0 0 chr15 11642995 11643282 -74052472 + AluJb SINE Alu 21 307 -5 732 250 32 86 chr15 11643282 11643456 -74052298 + L1MDb LINE L1 3894 4038 -2368 22 35 0 0 chr15 11643474 11643503 -74052251 + AT_rich Low_complexity Low_complexity 1 29 0 1807 303 32 23 chr15 11643546 11644325 -74051429 + L1MC4a LINE L1 286 1071 -5516 992 216 13 74 chr15 11644323 11644378 -74051376 + L1MC4a LINE L1 4099 4156 -2250 * 1067 71 71 0 chr15 11644378 11644533 -74051221 + L1PA8 LINE L1 6007 6172 0 992 216 13 74 chr15 11644533 11644787 -74050967 + L1MC4a LINE L1 4156 4389 -2017 217 337 174 0 chr15 11646705 11646791 -74048963 + MIR SINE MIR 52 152 -56 195 100 0 0 chr15 11647093 11647123 -74048631 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2126 91 14 3 chr15 11647992 11648288 -74047466 - AluSq SINE Alu -14 299 1 780 183 12 6 chr15 11648404 11648568 -74047186 + MER103 DNA DNA 1 165 -1 240 216 21 0 chr15 11649621 11649679 -74046075 - MIR SINE MIR -61 147 87 189 107 0 0 chr15 11649973 11650001 -74045753 + (A)n Simple_repeat Simple_repeat 1 28 0 186 219 244 12 chr15 11650271 11650353 -74045401 + MIR SINE MIR 45 145 -63 491 276 147 37 chr15 11651493 11651656 -74044098 - MER5A DNA MER1_type 0 189 9 291 336 67 34 chr15 11651929 11652078 -74043676 + MER5A DNA MER1_type 29 182 -7 2033 140 3 3 chr15 11653284 11653591 -74042163 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 11653777 11653819 -74041935 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 2258 93 0 0 chr15 11653819 11654099 -74041655 - AluSx SINE Alu -32 280 1 222 91 0 0 chr15 11654136 11654169 -74041585 + (A)n Simple_repeat Simple_repeat 1 33 0 3283 211 51 12 chr15 11654171 11655377 -74040377 + L1MC4a LINE L1 4667 5916 -510 976 233 0 58 chr15 11655392 11655705 -74040049 + L1ME1 LINE L1 5870 6164 -2 376 274 10 10 chr15 11656600 11656702 -74039052 - MER5A DNA MER1_type -6 183 82 197 300 0 17 chr15 11657387 11657447 -74038307 + MER5B DNA MER1_type 24 82 -96 447 234 109 30 chr15 11657755 11657956 -74037798 + L1MC4a LINE L1 6115 6331 -1737 674 231 63 89 chr15 11658097 11658366 -74037388 + MIR SINE MIR 1 262 0 1019 108 0 0 chr15 11658379 11658509 -74037245 - AluJo SINE Alu -178 134 5 253 175 0 0 chr15 11659341 11659381 -74036373 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 197 266 62 62 chr15 11659411 11659475 -74036279 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 11660389 11660411 -74035343 + AT_rich Low_complexity Low_complexity 1 22 0 344 360 32 8 chr15 11660708 11660833 -74034921 + L2 LINE L2 3143 3270 -2 3250 148 36 8 chr15 11661284 11661894 -74033860 + L1MB8 LINE L1 5552 6178 0 295 230 56 56 chr15 11663635 11663761 -74031993 + L2 LINE L2 3124 3249 -64 1623 187 0 0 chr15 11663903 11664176 -74031578 + AluJb SINE Alu 40 312 0 403 213 118 8 chr15 11664332 11664348 -74031406 - L1MA10 LINE L1 -2 6332 6317 3181 205 70 38 chr15 11664348 11665220 -74030534 - L1ME2 LINE L1 -9 6155 5256 383 154 88 33 chr15 11665319 11665410 -74030344 + MLT1L LTR MaLR 465 560 -55 26 0 0 0 chr15 11666147 11666173 -74029581 + AT_rich Low_complexity Low_complexity 1 26 0 1938 172 3 0 chr15 11667040 11667342 -74028412 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr15 11667765 11667787 -74027967 + AT_rich Low_complexity Low_complexity 1 22 0 384 288 59 70 chr15 11667960 11668318 -74027436 - MARNA DNA Mariner -19 567 214 775 263 166 30 chr15 11668667 11669172 -74026582 - L1ME4a LINE L1 -65 6056 5483 22 35 0 0 chr15 11670178 11670207 -74025547 + AT_rich Low_complexity Low_complexity 1 29 0 522 299 181 45 chr15 11672268 11672770 -74022984 + L2 LINE L2 2480 3060 -212 320 277 47 98 chr15 11673775 11673923 -74021831 + MIR SINE MIR 2 131 -131 2134 129 0 3 chr15 11673923 11674226 -74021528 + AluSx SINE Alu 6 307 -5 320 277 47 98 chr15 11674226 11674351 -74021403 + MIR SINE MIR 131 261 -1 2247 102 10 0 chr15 11674564 11674857 -74020897 + AluSx SINE Alu 1 296 -16 451 219 67 55 chr15 11675341 11675505 -74020249 + LTR45B LTR ERV1 324 489 0 439 244 120 81 chr15 11675514 11675772 -74019982 + HAL1 LINE L1 358 625 -1882 1360 236 62 5 chr15 11675804 11676189 -74019565 + HAL1 LINE L1 1388 1794 -713 815 289 53 3 chr15 11676220 11676538 -74019216 + HAL1 LINE L1 1881 2214 -293 2263 126 0 0 chr15 11677611 11677921 -74017833 - AluSx SINE Alu -2 310 1 23 33 0 0 chr15 11677970 11678000 -74017754 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 11678279 11678300 -74017454 + AT_rich Low_complexity Low_complexity 1 21 0 488 307 80 0 chr15 11678834 11678997 -74016757 - LTR33A LTR ERVL -125 398 223 23 0 0 0 chr15 11679181 11679204 -74016550 + AT_rich Low_complexity Low_complexity 1 23 0 205 238 0 129 chr15 11679373 11679474 -74016280 - L2 LINE L2 -16 3297 3210 837 284 37 26 chr15 11679614 11679885 -74015869 - ERVL LTR ERVL -618 5146 4873 2406 93 3 0 chr15 11679940 11680251 -74015503 + AluSx SINE Alu 1 312 0 339 313 107 33 chr15 11681189 11681339 -74014415 + MER5A DNA MER1_type 1 161 -28 2315 81 0 7 chr15 11682661 11682958 -74012796 + AluY SINE Alu 5 299 -12 246 267 50 0 chr15 11682958 11683018 -74012736 + MER5C DNA MER1_type 5 67 -257 228 271 82 59 chr15 11683333 11683418 -74012336 - MIR SINE MIR -127 135 49 2181 106 0 0 chr15 11683831 11684139 -74011615 + AluSx SINE Alu 1 308 0 2067 102 20 10 chr15 11684232 11684527 -74011227 + AluSq SINE Alu 1 298 -15 923 92 0 0 chr15 11685492 11685612 -74010142 - AluSc SINE Alu -17 292 173 2044 149 8 37 chr15 11688413 11688789 -74006965 - MER47A DNA MER2_type 0 366 2 1293 202 40 53 chr15 11688898 11689333 -74006421 - LTR10B LTR ERV1 0 547 76 414 0 0 0 chr15 11689423 11689469 -74006285 + (CA)n Simple_repeat Simple_repeat 1 46 0 3223 228 52 36 chr15 11689664 11690698 -74005056 + L1MDa LINE L1 1320 2336 -4204 1968 131 26 10 chr15 11690698 11691003 -74004751 + AluSx SINE Alu 1 310 -2 306 0 0 0 chr15 11691003 11691037 -74004717 + (TA)n Simple_repeat Simple_repeat 2 35 0 3223 228 52 36 chr15 11691037 11691924 -74003830 + L1MDa LINE L1 2335 3277 -3263 701 196 21 93 chr15 11691924 11692062 -74003692 - MER58B DNA MER1_type -2079 341 219 632 117 45 0 chr15 11692062 11692173 -74003581 + L1MA6 LINE L1 6185 6300 0 701 196 21 93 chr15 11692173 11692228 -74003526 - MER58B DNA MER1_type -2201 219 162 2147 109 0 3 chr15 11692381 11692693 -74003061 + AluSq SINE Alu 1 311 0 2216 59 4 0 chr15 11694419 11694690 -74001064 + AluY SINE Alu 1 272 -39 2315 55 3 29 chr15 11694701 11695012 -74000742 + AluY SINE Alu 1 303 -8 28 38 0 19 chr15 11695178 11695206 -74000548 + AT_rich Low_complexity Low_complexity 1 29 -23 1656 171 29 7 chr15 11695206 11695486 -74000268 - AluJo SINE Alu -26 286 1 28 38 0 19 chr15 11695486 11695510 -74000244 + AT_rich Low_complexity Low_complexity 29 52 0 1638 201 3 3 chr15 11695709 11696008 -73999746 - AluJo SINE Alu -13 299 1 199 363 128 20 chr15 11698395 11698497 -73997257 + L2 LINE L2 3160 3272 0 1221 286 154 31 chr15 11698614 11699400 -73996354 - L2 LINE L2 -1 3312 2420 243 345 78 9 chr15 11700593 11700709 -73995045 + L2 LINE L2 3186 3309 -4 271 294 123 59 chr15 11701268 11701472 -73994282 - MER20 DNA MER1_type 0 219 3 1585 121 13 0 chr15 11701644 11701868 -73993886 + AluSg/x SINE Alu 75 301 -11 1589 155 34 11 chr15 11701912 11702177 -73993577 + AluSx SINE Alu 3 273 -39 2153 75 50 4 chr15 11703985 11704264 -73991490 + AluSg1 SINE Alu 1 292 -17 5279 154 59 20 chr15 11706491 11708078 -73987676 - L1MA9 LINE L1 -3 6309 4663 496 245 7 27 chr15 11708075 11708222 -73987532 - L1M4c LINE L1 -4605 1779 1636 * 733 233 48 24 chr15 11708837 11709047 -73986707 - L1MB8 LINE L1 -1 6177 5963 28 0 0 0 chr15 11709382 11709410 -73986344 + AT_rich Low_complexity Low_complexity 1 28 0 2103 86 57 4 chr15 11711025 11711305 -73984449 - AluSg SINE Alu -15 295 1 2336 83 3 3 chr15 11711479 11711779 -73983975 + AluSq SINE Alu 1 300 -13 795 202 72 69 chr15 11712378 11712724 -73983030 + L1MC5 LINE L1 7147 7493 -468 487 265 105 7 chr15 11713076 11713404 -73982350 - MARNA DNA Mariner -43 543 166 1846 159 3 3 chr15 11713516 11713818 -73981936 + AluJo SINE Alu 1 302 -10 3830 123 5 41 chr15 11714358 11715015 -73980739 - MER41B LTR ERV1 -2 633 1 686 164 15 8 chr15 11715693 11715827 -73979927 - LTR37A LTR ERV1 -2 424 290 269 172 53 189 chr15 11715841 11716010 -73979744 - LTR37A LTR ERV1 -242 184 39 329 292 161 12 chr15 11716137 11716298 -73979456 - MIR SINE MIR -5 257 73 302 305 79 35 chr15 11716447 11716650 -73979104 + MIR SINE MIR 5 216 -46 189 0 0 0 chr15 11716765 11716786 -73978968 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 4914 36 2 2 chr15 11717433 11718023 -73977731 + L1PA5 LINE L1 5565 6154 0 311 233 128 0 chr15 11718755 11718841 -73976913 - MIR SINE MIR -78 184 88 246 284 216 0 chr15 11718992 11719108 -73976646 + MIR3 SINE MIR 67 207 -1 525 183 0 124 chr15 11719198 11719351 -73976403 + MIR SINE MIR 119 252 -10 183 80 0 0 chr15 11719356 11719381 -73976373 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2540 51 0 22 chr15 11719459 11719774 -73975980 + AluY SINE Alu 1 308 -3 569 315 20 30 chr15 11720147 11720347 -73975407 + MIR3 SINE MIR 2 199 -9 1104 220 9 5 chr15 11721842 11722060 -73973694 + MER58A DNA MER1_type 5 223 -1 640 214 0 15 chr15 11722078 11722209 -73973545 + FLAM_A SINE Alu 1 129 -4 476 290 48 5 chr15 11722211 11722397 -73973357 - L1MC/D LINE L1 -2001 5807 5614 233 268 37 12 chr15 11723075 11723157 -73972597 - L2 LINE L2 -18 3254 3171 2684 198 6 8 chr15 11723247 11723763 -73971991 + MER119 DNA MER1_type 69 583 0 547 249 77 22 chr15 11723779 11723960 -73971794 + MIR SINE MIR 70 260 -2 619 129 35 190 chr15 11724776 11725008 -73970746 + MER20 DNA MER1_type 22 217 -2 708 239 11 17 chr15 11725165 11725341 -73970413 + MER5B DNA MER1_type 1 175 -3 2196 67 0 0 chr15 11725502 11725770 -73969984 - AluY SINE Alu -9 302 35 3480 130 24 49 chr15 11726511 11727127 -73968627 + LTR26 LTR ERV1 3 603 0 30 45 0 0 chr15 11727621 11727665 -73968089 + AT_rich Low_complexity Low_complexity 1 44 0 2215 125 0 0 chr15 11727674 11727971 -73967783 + AluSx SINE Alu 1 297 -15 30 59 0 0 chr15 11728030 11728081 -73967673 + AT_rich Low_complexity Low_complexity 1 51 0 1959 134 37 3 chr15 11729240 11729390 -73966364 + AluJo SINE Alu 1 145 -167 234 0 0 0 chr15 11729390 11729416 -73966338 + (TG)n Simple_repeat Simple_repeat 2 27 0 1959 134 37 3 chr15 11729416 11729563 -73966191 + AluJo SINE Alu 145 308 -4 669 223 81 68 chr15 11729658 11729714 -73966040 + LTR37A LTR ERV1 112 166 -260 1885 162 0 7 chr15 11729714 11730010 -73965744 + AluJb SINE Alu 1 294 -18 669 223 81 68 chr15 11730010 11730263 -73965491 + LTR37A LTR ERV1 166 425 -1 1374 152 5 5 chr15 11730270 11730481 -73965273 + AluJo SINE Alu 24 234 -78 224 200 15 0 chr15 11730758 11730823 -73964931 + CT-rich Low_complexity Low_complexity 3 68 0 24 32 0 0 chr15 11731464 11731495 -73964259 + AT_rich Low_complexity Low_complexity 1 31 0 351 255 40 107 chr15 11732176 11732325 -73963429 - L2 LINE L2 -1 3271 3133 21 0 0 0 chr15 11732336 11732357 -73963397 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr15 11732979 11733022 -73962732 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr15 11734088 11734113 -73961641 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 25 31 0 0 chr15 11735338 11735370 -73960384 + AT_rich Low_complexity Low_complexity 1 32 0 229 217 14 0 chr15 11735466 11735535 -73960219 + (TA)n Simple_repeat Simple_repeat 2 71 0 41 58 0 0 chr15 11735735 11735804 -73959950 + AT_rich Low_complexity Low_complexity 1 69 0 437 258 74 74 chr15 11736407 11736636 -73959118 + MIR SINE MIR 26 254 -8 2462 100 0 0 chr15 11736816 11737126 -73958628 + AluSx SINE Alu 3 312 0 1925 136 4 4 chr15 11737473 11737752 -73958002 + AluSx SINE Alu 1 279 -33 221 73 0 24 chr15 11737754 11737795 -73957959 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2354 60 0 0 chr15 11738534 11738847 -73956907 + AluY SINE Alu 1 313 0 501 132 44 26 chr15 11738859 11738973 -73956781 + Charlie1 DNA MER1_type 1566 1681 -1080 798 184 8 90 chr15 11738978 11739013 -73956741 + Charlie1 DNA MER1_type 1783 1819 -942 2375 87 7 0 chr15 11739013 11739311 -73956443 + AluSg SINE Alu 1 300 -10 798 184 8 90 chr15 11739311 11739520 -73956234 + Charlie1 DNA MER1_type 1819 2007 -754 2954 202 57 35 chr15 11739524 11739667 -73956087 - L1ME1 LINE L1 -122 6044 5906 2037 142 3 3 chr15 11739667 11739969 -73955785 - AluJb SINE Alu -10 302 1 2954 202 57 35 chr15 11739969 11740407 -73955347 - L1ME1 LINE L1 -260 5906 5479 1260 182 190 8 chr15 11740407 11740665 -73955089 - AluSx SINE Alu -7 305 1 2954 202 57 35 chr15 11740665 11740848 -73954906 - L1ME1 LINE L1 -687 5479 5302 1733 154 49 6 chr15 11740848 11741172 -73954582 + MER44D DNA MER2_type 2 609 0 2954 202 57 35 chr15 11741172 11741897 -73953857 - L1ME1 LINE L1 -864 5302 4519 1651 162 99 48 chr15 11741953 11742293 -73953461 + Charlie1 DNA MER1_type 2231 2603 -158 2361 88 3 0 chr15 11742293 11742588 -73953166 - AluSx SINE Alu -16 296 1 1651 162 99 48 chr15 11742588 11742722 -73953032 + Charlie1 DNA MER1_type 2603 2729 -32 390 239 173 38 chr15 11743053 11743342 -73952412 + L1ME LINE L1 5319 5646 -475 2209 92 27 0 chr15 11743416 11743708 -73952046 + AluSx SINE Alu 1 300 -12 2197 48 44 0 chr15 11743744 11744053 -73951701 + AluY SINE Alu 1 321 0 555 237 158 26 chr15 11744236 11744464 -73951290 + MIR SINE MIR 5 262 0 25 99 0 0 chr15 11745011 11745092 -73950662 + AT_rich Low_complexity Low_complexity 1 81 0 6251 76 9 0 chr15 11746090 11747496 -73948258 - L1PA8A LINE L1 -13 6118 4704 2645 41 0 13 chr15 11748678 11748993 -73946761 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 11749196 11749226 -73946528 + AT_rich Low_complexity Low_complexity 1 30 0 1897 129 6 28 chr15 11749384 11749701 -73946053 + AluSx SINE Alu 2 311 -1 1973 140 23 3 chr15 11750535 11750835 -73944919 + AluSx SINE Alu 1 306 -6 310 241 205 36 chr15 11751034 11751146 -73944608 - MIR3 SINE MIR -48 160 30 22 56 0 0 chr15 11751317 11751353 -73944401 + AT_rich Low_complexity Low_complexity 1 36 0 1854 139 0 46 chr15 11751687 11752042 -73943712 + AluJb SINE Alu 1 340 0 183 42 0 0 chr15 11752066 11752090 -73943664 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 26 82 0 0 chr15 11752090 11752151 -73943603 + AT_rich Low_complexity Low_complexity 1 61 0 206 147 88 0 chr15 11752168 11752236 -73943518 + (TA)n Simple_repeat Simple_repeat 2 75 0 422 274 89 19 chr15 11753497 11753654 -73942100 - MIR3 SINE MIR -1 207 40 2320 104 0 0 chr15 11754291 11754589 -73941165 + AluSx SINE Alu 1 298 -14 2187 94 42 0 chr15 11754893 11755180 -73940574 - AluY SINE Alu -10 301 3 52 36 0 12 chr15 11755441 11755460 -73940294 + AT_rich Low_complexity Low_complexity 1 19 -64 2264 103 0 0 chr15 11755460 11755751 -73940003 + AluSx SINE Alu 1 291 -21 52 36 0 12 chr15 11755751 11755815 -73939939 + AT_rich Low_complexity Low_complexity 19 83 0 224 323 21 10 chr15 11755975 11756071 -73939683 + L2 LINE L2 3176 3272 0 2184 121 3 0 chr15 11756110 11756415 -73939339 + AluSx SINE Alu 1 306 -6 2177 123 0 0 chr15 11756917 11757225 -73938529 - AluSg SINE Alu -2 308 1 525 274 172 28 chr15 11757625 11757840 -73937914 - MIR SINE MIR -8 254 9 2230 94 7 7 chr15 11758106 11758404 -73937350 + AluSp SINE Alu 1 298 -15 2814 197 34 13 chr15 11760103 11760718 -73935036 - MER82 DNA MER2_type -3 650 23 359 0 43 0 chr15 11761303 11761349 -73934405 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 458 295 66 72 chr15 11762996 11763345 -73932409 + L2 LINE L2 2212 2558 -756 191 283 19 0 chr15 11763363 11763416 -73932338 + L2 LINE L2 2686 2739 -575 2231 115 0 3 chr15 11763847 11764151 -73931603 + AluSq SINE Alu 1 303 -10 6292 61 53 31 chr15 11764504 11765685 -73930069 + SVA Other Other 430 1440 0 1736 189 10 0 chr15 11765744 11766041 -73929713 - AluJo SINE Alu -12 300 1 1948 103 58 34 chr15 11766625 11766917 -73928837 + AluSx SINE Alu 1 299 -13 1940 104 7 15 chr15 11767096 11767366 -73928388 - AluSp SINE Alu -13 300 33 2478 97 0 0 chr15 11767486 11767795 -73927959 - AluSc SINE Alu 0 309 1 640 320 24 29 chr15 11767795 11768286 -73927468 - L1MEd LINE L1 -5042 1077 589 207 226 75 0 chr15 11768383 11768436 -73927318 - MIR SINE MIR -128 134 78 2386 77 10 0 chr15 11768799 11769096 -73926658 + AluSc SINE Alu 1 300 -9 310 276 164 0 chr15 11769291 11769407 -73926347 + MIR SINE MIR 110 244 -18 490 280 192 10 chr15 11769568 11769761 -73925993 + MIR SINE MIR 3 230 -32 194 356 26 26 chr15 11771246 11771314 -73924440 + MIR SINE MIR 29 99 -163 2045 146 0 7 chr15 11771314 11771623 -73924131 - AluSx SINE Alu -4 308 2 194 356 26 26 chr15 11771623 11771669 -73924085 + MIR SINE MIR 98 143 -119 2008 163 3 3 chr15 11771719 11772014 -73923740 - AluJb SINE Alu -17 295 1 1980 137 7 3 chr15 11772249 11772549 -73923205 + AluSx SINE Alu 1 301 -11 287 256 39 0 chr15 11772629 11772707 -73923047 - MIR SINE MIR -7 255 175 2277 94 3 3 chr15 11773034 11773333 -73922421 + AluSq SINE Alu 2 300 -13 322 123 0 55 chr15 11773334 11773407 -73922347 + L1ME3A LINE L1 5882 5950 -220 2245 97 0 7 chr15 11773776 11774076 -73921678 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr15 11774104 11774124 -73921630 + (A)n Simple_repeat Simple_repeat 1 20 0 756 199 52 62 chr15 11774124 11774335 -73921419 + MIR SINE MIR 36 244 -18 1613 89 5 0 chr15 11774565 11774768 -73920986 - AluSg/x SINE Alu -13 297 94 2287 82 20 0 chr15 11774831 11775155 -73920599 + AluSp SINE Alu 1 330 0 190 0 0 0 chr15 11775134 11775235 -73920519 + (TAA)n Simple_repeat Simple_repeat 1 101 0 2428 54 7 0 chr15 11775334 11775629 -73920125 + AluY SINE Alu 1 297 -14 1577 185 7 11 chr15 11775639 11775920 -73919834 + AluJb SINE Alu 1 280 -32 227 325 175 0 chr15 11776251 11776377 -73919377 + L2 LINE L2 3016 3163 -150 213 151 0 0 chr15 11776379 11776432 -73919322 + (TA)n Simple_repeat Simple_repeat 2 54 0 401 356 7 22 chr15 11776432 11776567 -73919187 + L2 LINE L2 3117 3249 -23 1749 184 0 16 chr15 11776570 11776874 -73918880 - AluJb SINE Alu -13 299 1 562 343 93 8 chr15 11776874 11777265 -73918489 + L2 LINE L2 2250 2674 -640 855 146 15 0 chr15 11777266 11777396 -73918358 + AluSq/x SINE Alu 2 133 -179 2405 81 0 13 chr15 11778736 11779044 -73916710 + AluSc SINE Alu 1 304 -5 519 324 36 9 chr15 11779091 11779313 -73916441 + MIR SINE MIR 20 247 -15 1825 172 7 3 chr15 11779431 11779728 -73916026 - AluJb SINE Alu -14 298 1 2276 112 0 3 chr15 11779893 11780198 -73915556 + AluSx SINE Alu 1 304 -8 1425 215 11 18 chr15 11780401 11780685 -73915069 - AluJo SINE Alu -30 282 1 266 297 0 43 chr15 11780920 11781058 -73914696 + L1ME4a LINE L1 5648 5779 -342 2450 70 3 0 chr15 11781068 11781368 -73914386 - AluY SINE Alu -10 301 1 320 223 146 8 chr15 11781385 11781515 -73914239 + L1ME4a LINE L1 5970 6117 -4 22 0 0 0 chr15 11781542 11781564 -73914190 + AT_rich Low_complexity Low_complexity 1 22 0 259 333 26 0 chr15 11782009 11782087 -73913667 - MIR SINE MIR -75 133 54 211 220 40 0 chr15 11782416 11782466 -73913288 + L2 LINE L2 3221 3272 0 2261 114 0 0 chr15 11782795 11783094 -73912660 + AluSx SINE Alu 1 299 -13 278 298 105 32 chr15 11783978 11784102 -73911652 + L2 LINE L2 3140 3272 0 2404 71 6 56 chr15 11784276 11784600 -73911154 - AluSp SINE Alu -5 308 1 474 276 234 4 chr15 11784616 11784855 -73910899 + L2 LINE L2 2917 3210 -103 2401 85 3 0 chr15 11785214 11785519 -73910235 - AluSp SINE Alu -7 306 1 395 206 169 0 chr15 11785528 11785645 -73910109 + FLAM_A SINE Alu 21 131 -2 2570 33 0 20 chr15 11785662 11785964 -73909790 - AluY SINE Alu -15 296 1 229 362 157 15 chr15 11785976 11786244 -73909510 - L2 LINE L2 -575 2739 2434 388 208 104 0 chr15 11786706 11786812 -73908942 + L2 LINE L2 3136 3252 -20 185 0 40 0 chr15 11787446 11787471 -73908283 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2087 101 0 4 chr15 11787523 11787800 -73907954 - AluSp SINE Alu -17 296 21 1987 119 26 0 chr15 11787842 11788145 -73907609 + AluSx SINE Alu 1 311 -1 3088 207 54 58 chr15 11788145 11788673 -73907081 - L1ME1 LINE L1 -17 6149 5621 2133 111 0 4 chr15 11788673 11788977 -73906777 - AluSg SINE Alu 0 304 2 3088 207 54 58 chr15 11788977 11789097 -73906657 - L1ME1 LINE L1 -545 5621 5502 1468 97 29 0 chr15 11789097 11789304 -73906450 - L1PA12 LINE L1 0 6168 5956 3088 207 54 58 chr15 11789304 11789331 -73906423 - L1ME1 LINE L1 -664 5502 5476 2295 77 0 14 chr15 11789331 11789645 -73906109 - AluSx SINE Alu 0 310 1 3088 207 54 58 chr15 11789645 11789833 -73905921 - L1ME1 LINE L1 -690 5476 5285 2148 108 23 10 chr15 11790065 11790372 -73905382 + AluY SINE Alu 1 311 0 2350 80 0 3 chr15 11790384 11790711 -73905043 + AluSq SINE Alu 1 326 0 2334 107 0 0 chr15 11791564 11791863 -73903891 + AluSx SINE Alu 1 299 -13 219 342 25 0 chr15 11792138 11792258 -73903496 - L2 LINE L2 -1300 2014 1892 250 267 61 79 chr15 11792593 11792758 -73902996 - MLT1K LTR MaLR -348 240 79 21 0 0 0 chr15 11843826 11843847 -73851907 + AT_rich Low_complexity Low_complexity 1 21 0 315 289 41 8 chr15 11843984 11844105 -73851649 + MIR SINE MIR 77 201 -61 197 280 0 0 chr15 11844803 11844853 -73850901 + L2 LINE L2 3264 3313 0 192 179 0 0 chr15 11845826 11845865 -73849889 + (TTGGGG)n Simple_repeat Simple_repeat 3 41 0 203 244 0 0 chr15 11845964 11846009 -73849745 - L2 LINE L2 -1 3312 3268 212 313 25 0 chr15 11846092 11846172 -73849582 - L2 LINE L2 -234 3038 2957 1835 117 4 8 chr15 11846977 11847243 -73848511 + AluSp SINE Alu 47 311 -2 1158 249 41 68 chr15 11847273 11847711 -73848043 + MER34 LTR ERV1 1 426 -116 2285 103 0 3 chr15 11847738 11848038 -73847716 - AluSg SINE Alu -11 299 1 1779 100 123 4 chr15 11848548 11848808 -73846946 - AluSx SINE Alu -21 291 1 801 172 0 0 chr15 11848850 11848978 -73846776 - FLAM_C SINE Alu -5 128 1 2254 109 0 0 chr15 11849010 11849304 -73846450 + AluSg SINE Alu 1 294 -16 2025 128 19 47 chr15 11849377 11849696 -73846058 + AluSx SINE Alu 1 310 -2 2303 91 3 38 chr15 11849705 11850025 -73845729 + AluSc SINE Alu 1 309 0 2382 64 0 0 chr15 11850026 11850309 -73845445 + AluY SINE Alu 1 283 -28 189 25 25 50 chr15 11850315 11850355 -73845399 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 62 0 0 chr15 11850584 11850648 -73845106 + (TC)n Simple_repeat Simple_repeat 1 64 0 224 278 163 0 chr15 11850842 11850993 -73844761 + MIR3 SINE MIR 28 202 -6 736 314 81 50 chr15 11851173 11851530 -73844224 + MER115 DNA AcHobo 1 368 -325 605 252 0 14 chr15 11852337 11852476 -73843278 + MIR3 SINE MIR 71 207 -1 1684 201 40 23 chr15 11852958 11853312 -73842442 - MLT1A1 LTR MaLR -2 363 4 2293 105 0 0 chr15 11853700 11853995 -73841759 + AluSg SINE Alu 1 295 -15 2228 102 0 0 chr15 11854006 11854290 -73841464 + AluSg SINE Alu 1 284 -26 2014 103 0 0 chr15 11854400 11854653 -73841101 - AluSc SINE Alu -56 253 1 208 280 0 0 chr15 11854820 11854870 -73840884 + L2 LINE L2 3220 3269 -3 2455 88 3 0 chr15 11855245 11855552 -73840202 - AluSp SINE Alu -5 308 1 36 23 0 0 chr15 11855795 11855838 -73839916 + AT_rich Low_complexity Low_complexity 1 43 0 2254 91 6 63 chr15 11855861 11856192 -73839562 - AluSx SINE Alu 0 312 1 296 258 126 44 chr15 11856397 11856579 -73839175 + MIR SINE MIR 66 262 0 1141 128 16 5 chr15 11856750 11856938 -73838816 - L1MB3 LINE L1 -3 6180 5991 2241 71 0 7 chr15 11857297 11857609 -73838145 - AluSg1 SINE Alu 0 310 1 273 224 67 22 chr15 11857625 11857759 -73837995 + L1ME4a LINE L1 5767 5906 -215 21 0 0 0 chr15 11857810 11857831 -73837923 + AT_rich Low_complexity Low_complexity 1 21 0 564 197 53 58 chr15 11857855 11858043 -73837711 + L1ME4a LINE L1 5935 6121 0 1468 67 0 6 chr15 11859174 11859353 -73836401 + AluSg SINE Alu 48 225 -85 811 116 9 0 chr15 11859453 11859565 -73836189 + AluSg/x SINE Alu 191 303 -9 213 261 0 0 chr15 11859565 11859611 -73836143 + MIR SINE MIR 207 252 -10 508 259 0 0 chr15 11859983 11860091 -73835663 + L2 LINE L2 3165 3272 0 24 0 0 0 chr15 11860462 11860486 -73835268 + AT_rich Low_complexity Low_complexity 1 24 0 203 292 0 0 chr15 11860843 11860891 -73834863 + T-rich Low_complexity Low_complexity 3 50 0 478 297 29 34 chr15 11861036 11861115 -73834639 - MIR SINE MIR -88 174 96 2352 81 0 3 chr15 11861115 11861412 -73834342 + AluSc SINE Alu 1 296 -13 478 297 29 34 chr15 11861412 11861507 -73834247 - MIR SINE MIR -166 96 1 273 244 84 42 chr15 11861720 11861839 -73833915 + MIR SINE MIR 89 212 -50 264 280 53 0 chr15 11862508 11862583 -73833171 - L2 LINE L2 -44 3269 3191 192 195 24 0 chr15 11862648 11862689 -73833065 + L2 LINE L2 3231 3272 0 2594 74 0 0 chr15 11862814 11863123 -73832631 - AluSg SINE Alu -1 309 1 226 283 19 0 chr15 11863128 11863181 -73832573 - L2 LINE L2 -16 3256 3203 2284 102 0 7 chr15 11863796 11864099 -73831655 - AluSg SINE Alu 0 310 10 23 0 0 0 chr15 11864215 11864238 -73831516 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr15 11865584 11865613 -73830141 + AT_rich Low_complexity Low_complexity 1 29 0 1211 83 6 0 chr15 11865618 11865774 -73829980 - AluSg/x SINE Alu -19 293 137 906 151 40 0 chr15 11865932 11866084 -73829670 - MER4B LTR ERV1 -452 158 1 882 243 94 72 chr15 11866090 11866486 -73829268 - L2 LINE L2 -10 3303 2881 2010 93 70 36 chr15 11866486 11866788 -73828966 + AluSx SINE Alu 1 312 0 882 243 94 72 chr15 11866788 11866970 -73828784 - L2 LINE L2 -432 2881 2705 209 0 98 0 chr15 11866977 11867018 -73828736 + (TA)n Simple_repeat Simple_repeat 1 45 0 1654 182 3 17 chr15 11867018 11867315 -73828439 - AluJo SINE Alu -19 293 1 1187 285 131 36 chr15 11867372 11867410 -73828344 + MLT2F LTR ERVL 5 38 -625 2369 65 0 0 chr15 11867410 11867728 -73828026 - AluSc SINE Alu 0 318 1 1187 285 131 36 chr15 11867728 11868236 -73827518 + MLT2F LTR ERVL 38 604 -59 455 96 12 0 chr15 11868237 11868320 -73827434 + (TA)n Simple_repeat Simple_repeat 1 84 0 224 248 47 8 chr15 11868343 11868472 -73827282 + (TA)n Simple_repeat Simple_repeat 2 135 0 1543 88 5 0 chr15 11868472 11868666 -73827088 - AluSx SINE Alu -117 195 1 250 94 94 19 chr15 11868817 11868870 -73826884 - MLT2B1 LTR ERVL 0 520 464 201 158 0 0 chr15 11868891 11868929 -73826825 + (TA)n Simple_repeat Simple_repeat 2 39 0 388 121 12 24 chr15 11868940 11868980 -73826774 + (GGAA)n Simple_repeat Simple_repeat 2 41 -42 2177 86 23 20 chr15 11868980 11869283 -73826471 + AluSp SINE Alu 1 304 -9 388 121 12 24 chr15 11869283 11869325 -73826429 + (GGAA)n Simple_repeat Simple_repeat 41 83 0 1865 229 6 57 chr15 11869326 11869815 -73825939 - MLT2B1 LTR ERVL -56 464 1 971 173 7 0 chr15 11869866 11870016 -73825738 + MER45A DNA AcHobo 26 176 -2 301 244 181 25 chr15 11870017 11870177 -73825577 - L2 LINE L2 -814 2500 2316 620 333 16 8 chr15 11870496 11870745 -73825009 + MLT1J LTR MaLR 11 261 -250 549 222 71 0 chr15 11870807 11870933 -73824821 + MLT1J LTR MaLR 375 509 -2 1794 90 0 43 chr15 11871742 11871997 -73823757 + AluSg SINE Alu 64 307 -3 477 143 12 12 chr15 11872010 11872094 -73823660 + AluSg/x SINE Alu 139 222 -88 235 393 36 0 chr15 11872214 11872326 -73823428 - L2 LINE L2 -252 3020 2905 387 274 9 18 chr15 11872444 11872557 -73823197 - LTR33 LTR ERVL 0 521 410 1894 136 27 13 chr15 11872564 11872865 -73822889 + AluSx SINE Alu 4 308 -4 226 386 79 0 chr15 11872913 11873040 -73822714 - LTR33 LTR ERVL -126 395 259 576 246 8 0 chr15 11873099 11873233 -73822521 - LTR33 LTR ERVL -374 147 13 675 291 38 8 chr15 11873250 11873487 -73822267 + MER46C DNA MER2_type 95 338 0 189 290 62 25 chr15 11873576 11873738 -73822016 - L2 LINE L2 -464 2850 2683 526 241 87 104 chr15 11874220 11874461 -73821293 + MER57B LTR ERV1 1 260 -166 257 91 0 109 chr15 11874490 11874529 -73821225 + MER57A LTR ERV1 349 382 -21 2099 120 3 20 chr15 11874529 11874828 -73820926 - AluSx SINE Alu -16 296 3 257 91 0 109 chr15 11874828 11874843 -73820911 + MER57A LTR ERV1 382 397 -6 2296 113 0 0 chr15 11875458 11875758 -73819996 - AluSx SINE Alu -12 300 1 2276 95 30 0 chr15 11875762 11876066 -73819688 - AluSp SINE Alu 0 313 1 2348 99 0 3 chr15 11876069 11876373 -73819381 - AluSg SINE Alu -7 303 1 36 0 0 0 chr15 11876376 11876412 -73819342 + AT_rich Low_complexity Low_complexity 1 36 0 223 250 55 23 chr15 11876466 11876594 -73819160 + (TA)n Simple_repeat Simple_repeat 2 133 0 700 250 64 0 chr15 11876629 11876785 -73818969 - FRAM SINE Alu 0 166 1 2522 75 0 0 chr15 11876929 11877236 -73818518 - AluY SINE Alu -4 307 1 783 231 72 56 chr15 11877730 11877981 -73817773 + MIR SINE MIR 3 257 -5 1987 146 6 16 chr15 11878222 11878537 -73817217 + AluSq SINE Alu 1 312 -1 2125 117 30 0 chr15 11878717 11879015 -73816739 + AluSq SINE Alu 1 307 -6 2018 128 35 0 chr15 11879057 11879347 -73816407 + AluSx SINE Alu 1 300 -12 2344 54 0 4 chr15 11879603 11879911 -73815843 + AluY SINE Alu 6 312 0 942 88 0 19 chr15 11880541 11880700 -73815054 + (TCC)n Simple_repeat Simple_repeat 1 156 0 183 80 0 0 chr15 11880723 11880748 -73815006 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 238 274 71 36 chr15 11880752 11880836 -73814918 - MIR SINE MIR -162 100 14 266 304 20 49 chr15 11880866 11880968 -73814786 - MER5A DNA MER1_type -25 164 66 2244 106 0 10 chr15 11881237 11881539 -73814215 + AluSg SINE Alu 6 304 -6 2429 59 0 29 chr15 11881826 11882132 -73813622 + AluY SINE Alu 1 297 -14 436 312 53 70 chr15 11882234 11882535 -73813219 + L2 LINE L2 2915 3210 -62 232 36 0 0 chr15 11883394 11883422 -73812332 + MER53 DNA DNA 1 28 -161 1714 68 5 0 chr15 11883459 11883664 -73812090 + AluSq SINE Alu 1 206 -107 1127 202 135 45 chr15 11883676 11884121 -73811633 - L1MC5 LINE L1 -308 7653 7169 2174 109 0 16 chr15 11884125 11884429 -73811325 - AluY SINE Alu -12 299 1 180 0 0 0 chr15 11884478 11884498 -73811256 + (TG)n Simple_repeat Simple_repeat 2 21 0 845 108 17 0 chr15 11884498 11884618 -73811136 - AluSq/x SINE Alu -190 122 1 25 0 0 0 chr15 11884641 11884666 -73811088 + AT_rich Low_complexity Low_complexity 1 25 0 343 151 0 0 chr15 11884673 11884726 -73811028 - MER66A LTR ERV1 -138 340 288 342 190 0 0 chr15 11884742 11884800 -73810954 - L1MC5 LINE L1 -845 7116 7059 812 268 109 58 chr15 11884812 11885141 -73810613 - LTR16A LTR ERVL -13 437 92 2521 90 3 0 chr15 11885288 11885600 -73810154 + AluSp SINE Alu 1 313 0 1385 213 92 56 chr15 11886482 11886829 -73808925 + L1MC5 LINE L1 7331 7707 -254 2462 77 0 0 chr15 11886829 11887129 -73808625 - AluY SINE Alu -11 300 1 1385 213 92 56 chr15 11887129 11887348 -73808406 + L1MC5 LINE L1 7707 7917 -44 299 311 0 25 chr15 11887848 11887967 -73807787 + CT-rich Low_complexity Low_complexity 1 116 0 1913 118 97 0 chr15 11888261 11888540 -73807214 + AluSx SINE Alu 3 308 -4 1104 238 116 104 chr15 11888624 11889227 -73806527 + L2 LINE L2 2359 2960 -353 2509 54 0 7 chr15 11889227 11889525 -73806229 - AluY SINE Alu -15 296 1 1104 238 116 104 chr15 11889525 11889839 -73805915 + L2 LINE L2 2960 3269 -44 27 29 0 0 chr15 11889940 11889974 -73805780 + AT_rich Low_complexity Low_complexity 1 34 0 2299 104 0 0 chr15 11890305 11890613 -73805141 - AluY SINE Alu -3 308 1 186 260 125 29 chr15 11890741 11890845 -73804909 + L3b LINE CR1 1272 1385 -198 588 232 68 6 chr15 11891490 11891667 -73804087 - MIR SINE MIR 0 262 75 200 86 29 0 chr15 11892117 11892152 -73803602 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2069 117 0 26 chr15 11892293 11892600 -73803154 - AluSg SINE Alu -11 299 1 2627 62 0 0 chr15 11892611 11892920 -73802834 - AluSc SINE Alu 0 309 1 1351 232 113 41 chr15 11893087 11893599 -73802155 - MLT1H LTR MaLR 0 549 1 1882 94 0 0 chr15 11894082 11894326 -73801428 + AluY SINE Alu 63 306 -5 583 242 66 28 chr15 11895310 11895492 -73800262 + MIR SINE MIR 74 262 0 2307 112 3 0 chr15 11895509 11895813 -73799941 + AluSp SINE Alu 1 305 -8 37 39 0 0 chr15 11895940 11895991 -73799763 + AT_rich Low_complexity Low_complexity 1 51 0 2572 80 0 0 chr15 11896240 11896551 -73799203 + AluY SINE Alu 1 311 0 22 70 0 0 chr15 11896868 11896911 -73798843 + AT_rich Low_complexity Low_complexity 1 43 0 239 240 0 0 chr15 11897441 11897491 -73798263 - Alu SINE Alu -118 185 136 2546 61 0 0 chr15 11898303 11898614 -73797140 + AluY SINE Alu 1 311 0 2833 16 0 0 chr15 11899282 11899588 -73796166 + AluYa5 SINE Alu 1 306 -5 355 291 57 65 chr15 11900817 11901003 -73794751 + MIR SINE MIR 7 192 -70 1940 155 0 3 chr15 11901003 11901306 -73794448 + AluSx SINE Alu 1 302 -10 355 291 57 65 chr15 11901306 11901366 -73794388 + MIR SINE MIR 192 251 -11 2440 56 3 16 chr15 11901452 11901756 -73793998 - AluY SINE Alu -11 300 1 2356 98 7 0 chr15 11902444 11902751 -73793003 - AluSq SINE Alu -3 310 2 1050 98 0 0 chr15 11902753 11902885 -73792869 - AluSq/x SINE Alu -180 132 1 1772 98 0 13 chr15 11903332 11903566 -73792188 - AluSx SINE Alu -81 231 1 304 267 0 12 chr15 11903731 11903817 -73791937 + MIR SINE MIR 164 248 -14 2586 83 0 0 chr15 11903991 11904303 -73791451 + AluSq SINE Alu 1 312 -1 203 290 85 57 chr15 11905734 11905822 -73789932 - MIR SINE MIR -30 232 148 2424 64 0 55 chr15 11905822 11906151 -73789603 - AluY SINE Alu 0 311 1 203 290 85 57 chr15 11906151 11906238 -73789516 - MIR SINE MIR -114 148 52 1977 147 0 13 chr15 11906498 11906811 -73788943 + AluJb SINE Alu 1 309 -3 2347 102 3 0 chr15 11907246 11907550 -73788204 - AluSg SINE Alu -5 305 1 4124 126 22 55 chr15 11907586 11908299 -73787455 + LTR8 LTR ERV1 1 690 -1 416 258 17 33 chr15 11908602 11908722 -73787032 - MER5B DNA MER1_type -1 177 60 198 103 0 0 chr15 11908860 11908889 -73786865 + (T)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr15 11909151 11909174 -73786580 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1906 95 57 4 chr15 11909460 11909723 -73786031 - AluSq SINE Alu -32 281 5 2157 101 13 16 chr15 11909738 11910045 -73785709 - AluSq SINE Alu -7 306 1 254 25 0 50 chr15 11910274 11910314 -73785440 - AluY SINE Alu -264 38 1 3084 198 88 4 chr15 11910317 11911009 -73784745 - L1MD2 LINE L1 -9 6350 5601 5163 130 19 60 chr15 11911109 11911333 -73784421 - L1PA16 LINE L1 -11 6155 5923 2138 128 3 3 chr15 11911333 11911639 -73784115 - AluSq SINE Alu -7 306 1 5163 130 19 60 chr15 11911639 11912163 -73783591 - L1PA16 LINE L1 -243 5923 5459 2094 129 0 3 chr15 11912163 11912457 -73783297 - AluSg SINE Alu -17 293 1 5163 130 19 60 chr15 11912457 11912737 -73783017 - L1PA16 LINE L1 -707 5459 5169 287 195 93 27 chr15 11913104 11913187 -73782567 + MIR SINE MIR 37 125 -83 1385 325 118 36 chr15 11913258 11913317 -73782437 + L2 LINE L2 1698 1751 -1563 2111 106 7 33 chr15 11913317 11913619 -73782135 - AluSx SINE Alu -18 294 1 1385 325 118 36 chr15 11913619 11914741 -73781013 + L2 LINE L2 1751 2976 -338 279 275 100 33 chr15 11914889 11915009 -73780745 + L2 LINE L2 3180 3307 -6 2289 110 3 0 chr15 11915752 11916052 -73779702 - AluSp SINE Alu -10 303 3 445 290 90 63 chr15 11916275 11916640 -73779114 - L2 LINE L2 -2 3311 2937 2365 80 13 0 chr15 11917222 11917521 -73778233 - AluSc SINE Alu -6 303 1 259 210 160 20 chr15 11918150 11918250 -73777504 - L2 LINE L2 0 3313 3200 274 287 53 11 chr15 11918321 11918415 -73777339 - MIR3 SINE MIR -21 187 90 948 144 26 0 chr15 11919315 11919468 -73776286 - L1PA15-16 LINE L1 -6437 412 256 3775 130 60 23 chr15 11919807 11921527 -73774227 + SVA Other Other 395 1151 -235 216 0 0 0 chr15 11921527 11921551 -73774203 + (T)n Simple_repeat Simple_repeat 1 24 0 2519 46 0 3 chr15 11921989 11922291 -73773463 + AluY SINE Alu 1 301 -10 2098 51 0 16 chr15 11923633 11923888 -73771866 + SVA Other Other 1135 1385 -1 2228 106 0 3 chr15 11924719 11925012 -73770742 - AluSq SINE Alu -21 292 1 924 102 8 0 chr15 11925233 11925360 -73770394 + FLAM_C SINE Alu 2 129 -4 445 247 247 16 chr15 11926499 11926693 -73769061 + MIR SINE MIR 3 241 -21 1223 232 140 41 chr15 11926794 11927208 -73768546 + MLT1K LTR MaLR 108 562 -26 454 320 23 0 chr15 11927718 11927846 -73767908 + L2 LINE L2 3139 3269 -3 1993 149 0 10 chr15 11928849 11929157 -73766597 - AluJb SINE Alu -7 305 1 439 328 68 25 chr15 11929392 11929715 -73766039 + L1MC/D LINE L1 5274 5610 -2198 2009 120 3 7 chr15 11929719 11930042 -73765712 + AluSx SINE Alu 1 322 0 228 170 0 0 chr15 11930092 11930145 -73765609 + L1MC4 LINE L1 6649 6701 -1341 247 256 100 33 chr15 11930159 11930249 -73765505 + L1MC/D LINE L1 5667 5762 -2046 203 314 14 29 chr15 11930441 11930511 -73765243 - MIR SINE MIR -113 95 27 227 120 0 60 chr15 11931433 11931483 -73764271 + (CGG)n Simple_repeat Simple_repeat 2 48 0 273 29 0 0 chr15 11931617 11931651 -73764103 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2454 79 0 0 chr15 11931718 11932022 -73763732 + AluY SINE Alu 1 304 -7 1021 165 6 0 chr15 11932086 11932256 -73763498 + L1PB4 LINE L1 5986 6156 0 26 30 0 0 chr15 11932758 11932791 -73762963 + AT_rich Low_complexity Low_complexity 1 33 0 2380 98 0 0 chr15 11933707 11934004 -73761750 + AluSg1 SINE Alu 1 297 -12 244 143 0 71 chr15 11934190 11934246 -73761508 - L1MC4 LINE L1 -1339 6703 6652 666 117 0 0 chr15 11935176 11935270 -73760484 + AluS SINE Alu 1 94 -219 2251 130 2 42 chr15 11935795 11936195 -73759559 + MLT1B LTR MaLR 7 390 0 320 293 77 28 chr15 11936625 11936806 -73758948 - L2 LINE L2 -353 2961 2772 25 83 0 0 chr15 11937700 11937760 -73757994 + AT_rich Low_complexity Low_complexity 1 60 0 410 235 67 42 chr15 11937787 11937906 -73757848 + MIR SINE MIR 2 123 -139 29 0 0 0 chr15 11939139 11939168 -73756586 + AT_rich Low_complexity Low_complexity 1 29 0 2412 96 0 0 chr15 11940273 11940576 -73755178 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr15 11940873 11940911 -73754843 + AT_rich Low_complexity Low_complexity 1 38 0 194 157 0 39 chr15 11941912 11941963 -73753791 + CT-rich Low_complexity Low_complexity 4 52 0 331 314 42 0 chr15 11941966 11942084 -73753670 - L2 LINE L2 0 3313 3191 2212 125 0 6 chr15 11942259 11942572 -73753182 - AluSx SINE Alu 0 312 2 23 0 0 0 chr15 11943841 11943864 -73751890 + AT_rich Low_complexity Low_complexity 1 23 0 256 325 204 30 chr15 11944300 11944531 -73751223 - L2 LINE L2 -16 3256 2986 985 271 96 43 chr15 11944611 11945102 -73750652 - LTR33A LTR ERVL -5 518 2 1467 261 134 12 chr15 11945329 11945820 -73749934 + MLT1H1 LTR MaLR 2 552 -3 905 232 23 18 chr15 11945937 11946157 -73749597 - MER58A DNA MER1_type -3 221 1 2428 65 3 0 chr15 11949335 11949628 -73746126 + AluSp SINE Alu 1 294 -19 1985 85 8 4 chr15 11949775 11950033 -73745721 + AluSc SINE Alu 40 298 -11 1947 153 0 7 chr15 11950037 11950338 -73745416 + AluSx SINE Alu 1 299 -13 314 294 200 12 chr15 11951230 11951390 -73744364 + MIR SINE MIR 2 191 -71 485 126 126 0 chr15 11954661 11954748 -73741006 - AluSx SINE Alu -19 290 193 1143 103 0 0 chr15 11954749 11954895 -73740859 - AluSx SINE Alu -167 146 1 341 287 76 25 chr15 11955492 11955649 -73740105 - MIR SINE MIR 0 262 98 1998 113 3 58 chr15 11958791 11959120 -73736634 - AluSx SINE Alu -1 311 1 545 171 18 9 chr15 11959244 11959355 -73736399 + L1MB3 LINE L1 5577 5688 -495 462 196 165 0 chr15 11959373 11959470 -73736284 - L2 LINE L2 -10 3303 3191 25 51 0 0 chr15 11960472 11960511 -73735243 + GC_rich Low_complexity Low_complexity 1 39 0 2475 158 33 4 chr15 11960619 11961069 -73734685 + L1MB3 LINE L1 5675 6137 -46 2425 62 7 13 chr15 11961074 11961378 -73734376 + AluSq SINE Alu 1 302 -11 2230 105 0 0 chr15 11961388 11961682 -73734072 + AluY SINE Alu 1 294 -17 227 222 0 0 chr15 11962416 11962461 -73733293 + MIR SINE MIR 192 236 -26 197 311 22 33 chr15 11963272 11963362 -73732392 + L2 LINE L2 3180 3268 -4 23 33 0 0 chr15 11963756 11963786 -73731968 + AT_rich Low_complexity Low_complexity 1 30 0 27 87 0 0 chr15 11964599 11964668 -73731086 + AT_rich Low_complexity Low_complexity 1 69 0 2304 90 0 0 chr15 11964680 11964970 -73730784 - AluSx SINE Alu -22 290 1 23 0 0 0 chr15 11964976 11964999 -73730755 + AT_rich Low_complexity Low_complexity 1 23 0 2374 88 0 7 chr15 11965128 11965434 -73730320 - AluSg SINE Alu -6 304 1 1052 90 0 0 chr15 11965437 11965570 -73730184 - AluSq/x SINE Alu -180 133 1 2616 60 17 22 chr15 11965577 11966107 -73729647 - LTR17 LTR ERV1 -196 584 1 2245 92 7 0 chr15 11966295 11966587 -73729167 + AluSc SINE Alu 1 294 -15 1902 104 18 11 chr15 11967641 11967954 -73727800 - AluSx SINE Alu 0 315 1 25 0 0 0 chr15 11968508 11968533 -73727221 + AT_rich Low_complexity Low_complexity 1 25 0 2490 93 3 0 chr15 11968537 11968849 -73726905 - AluSp SINE Alu 0 313 1 1609 165 4 18 chr15 11969122 11969401 -73726353 + AluJb SINE Alu 1 275 -37 347 316 51 0 chr15 11969934 11970051 -73725703 + L2 LINE L2 3189 3311 -2 229 364 24 57 chr15 11970935 11971232 -73724522 - L2 LINE L2 -406 2908 2622 22 0 0 0 chr15 11973251 11973273 -73722481 + AT_rich Low_complexity Low_complexity 1 22 0 402 294 74 2 chr15 11974608 11974763 -73720991 - MER5A DNA MER1_type 0 189 12 390 274 68 0 chr15 11974859 11974976 -73720778 - L2 LINE L2 0 3313 3189 248 276 81 23 chr15 11975234 11975321 -73720433 - L2 LINE L2 0 3313 3222 4031 146 44 22 chr15 11975471 11976131 -73719623 + L1MA4 LINE L1 5491 6173 -127 297 51 0 0 chr15 11976131 11976170 -73719584 + (CA)n Simple_repeat Simple_repeat 2 40 0 4031 146 44 22 chr15 11976170 11976297 -73719457 + L1MA4 LINE L1 6173 6296 -4 304 128 59 59 chr15 11976309 11976411 -73719343 - Zaphod DNA AcHobo -3112 919 818 1326 322 86 17 chr15 11976447 11977027 -73718727 - L2 LINE L2 -338 2976 2357 237 196 0 54 chr15 11977929 11977985 -73717769 + CT-rich Low_complexity Low_complexity 3 55 0 501 299 41 7 chr15 11978327 11978474 -73717280 - MIR SINE MIR -22 240 89 1912 123 95 0 chr15 11979091 11979376 -73716378 + AluSx SINE Alu 1 312 0 2553 93 0 0 chr15 11979672 11979984 -73715770 + AluSx SINE Alu 1 312 0 198 0 0 0 chr15 11981001 11981023 -73714731 + (T)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr15 11981097 11981130 -73714624 + AT_rich Low_complexity Low_complexity 1 33 0 238 264 46 90 chr15 11981639 11981909 -73713845 + L3 LINE CR1 1227 1543 -34 277 245 85 0 chr15 11982204 11982298 -73713456 - L1MC5 LINE L1 -30 7931 7830 1768 198 62 37 chr15 11982323 11982807 -73712947 + MLT1D LTR MaLR 7 502 -3 31 44 0 0 chr15 11983043 11983088 -73712666 + AT_rich Low_complexity Low_complexity 1 45 0 1267 190 118 14 chr15 11983515 11983794 -73711960 + AluJo SINE Alu 1 308 -4 1926 132 26 166 chr15 11984351 11984888 -73710866 + MLT2C2 LTR ERVL 1 462 -2 1715 177 7 0 chr15 11986813 11987101 -73708653 + AluJo SINE Alu 1 290 -22 2482 58 0 0 chr15 11987737 11988029 -73707725 - AluY SINE Alu -19 292 1 441 200 87 9 chr15 11988792 11988907 -73706847 - L1ME4a LINE L1 -54 6067 5944 227 204 0 0 chr15 11989449 11989493 -73706261 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr15 11989714 11989757 -73705997 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 260 22 4 chr15 11990736 11990967 -73704787 - MIR SINE MIR -22 240 6 199 411 36 9 chr15 11992149 11992261 -73703493 + L2 LINE L2 2422 2536 -778 209 289 22 0 chr15 11992326 11992371 -73703383 - MIR SINE MIR -142 66 21 278 320 11 45 chr15 11992612 11992790 -73702964 + L2 LINE L2 1538 1709 -1605 2277 92 0 3 chr15 11992878 11993181 -73702573 - AluSg SINE Alu -8 302 1 181 346 59 0 chr15 11993287 11993388 -73702366 + L2 LINE L2 1881 1987 -1327 * 257 246 0 0 chr15 11993384 11993441 -73702313 - L2 LINE L2 0 3272 3216 552 233 122 11 chr15 11994896 11995061 -73700693 - MER5A DNA MER1_type 0 189 4 4779 149 51 6 chr15 11995082 11995909 -73699845 + MER6 DNA MER2_type 2 865 0 291 225 12 38 chr15 11995955 11996035 -73699719 - MER103 DNA DNA -17 149 72 2190 122 3 0 chr15 11996132 11996443 -73699311 - AluSq SINE Alu -1 312 1 1139 184 147 7 chr15 11996626 11996925 -73698829 + MER58B DNA MER1_type 1 341 0 204 97 0 0 chr15 11997346 11997377 -73698377 + (GA)n Simple_repeat Simple_repeat 2 32 0 1262 138 51 12 chr15 11997719 11997973 -73697781 + L1MA6 LINE L1 6037 6300 0 443 253 127 0 chr15 11997998 11998156 -73697598 + MIR SINE MIR 85 262 0 231 208 38 0 chr15 11998185 11998238 -73697516 + L2 LINE L2 3258 3312 -1 436 357 39 18 chr15 11998950 11999178 -73696576 - MIR SINE MIR -30 232 3 1360 264 123 50 chr15 12002460 12003059 -73692695 + L2 LINE L2 1063 1705 -1609 4753 124 40 6 chr15 12003068 12003849 -73691905 + L1PA16 LINE L1 5357 6163 -3 1903 295 93 80 chr15 12003853 12004081 -73691673 + L2 LINE L2 1713 1937 -1376 1720 131 10 39 chr15 12004081 12004387 -73691367 - L1PA15 LINE L1 0 6165 5869 1903 295 93 80 chr15 12004387 12004488 -73691266 + L2 LINE L2 1937 2035 -1278 2572 35 0 0 chr15 12004488 12004799 -73690955 + L1PA4 LINE L1 5845 6155 0 1903 295 93 80 chr15 12004799 12005148 -73690606 + L2 LINE L2 2035 2378 -935 1607 168 40 114 chr15 12005148 12005552 -73690202 + MLT1A2 LTR MaLR 1 374 0 1903 295 93 80 chr15 12005552 12006448 -73689306 + L2 LINE L2 2378 3311 -2 22 0 0 0 chr15 12008036 12008058 -73687696 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr15 12008176 12008232 -73687522 + AT_rich Low_complexity Low_complexity 1 56 0 999 251 37 33 chr15 12009694 12010183 -73685571 + MER39 LTR ERV1 18 542 0 231 292 18 62 chr15 12010929 12011042 -73684712 - MIR SINE MIR -50 212 105 24 0 0 0 chr15 12011210 12011234 -73684520 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 12011830 12011858 -73683896 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr15 12012300 12012330 -73683424 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr15 12015254 12015291 -73680463 + AT_rich Low_complexity Low_complexity 1 37 0 2002 130 10 79 chr15 12015303 12015505 -73680249 - Tigger4(Zombi) DNA MER2_type -1 2730 2566 2302 114 0 0 chr15 12015505 12015811 -73679943 - AluSg SINE Alu -4 306 1 2002 130 10 79 chr15 12015811 12015999 -73679755 - Tigger4(Zombi) DNA MER2_type -165 2566 2367 459 165 101 0 chr15 12016023 12016102 -73679652 - Tigger4(Zombi) DNA MER2_type -2644 87 1 1061 149 0 0 chr15 12016344 12016498 -73679256 - FAM SINE Alu -18 157 4 486 172 35 0 chr15 12016534 12016621 -73679133 - AluJb SINE Alu -111 201 112 25 31 0 0 chr15 12016621 12016653 -73679101 + AT_rich Low_complexity Low_complexity 1 32 0 637 312 88 71 chr15 12016805 12017353 -73678401 + L2 LINE L2 2325 2881 -433 427 297 25 0 chr15 12017562 12017680 -73678074 - L2 LINE L2 0 3313 3193 2445 68 3 0 chr15 12020120 12020416 -73675338 - AluSp SINE Alu -16 297 1 1646 169 19 36 chr15 12020938 12021246 -73674508 + AluJo SINE Alu 1 303 -9 306 0 0 0 chr15 12021246 12021280 -73674474 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2279 95 0 7 chr15 12021303 12021598 -73674156 + AluSp SINE Alu 1 293 -20 678 184 0 26 chr15 12021604 12021756 -73673998 - L1MA6 LINE L1 -9 6291 6144 2563 88 5 37 chr15 12021877 12022251 -73673503 - THE1B LTR MaLR 0 364 3 286 388 39 0 chr15 12022459 12022562 -73673192 + L2 LINE L2 3149 3255 -17 2289 115 3 0 chr15 12022570 12022882 -73672872 + AluSp SINE Alu 1 313 0 329 250 116 47 chr15 12022897 12023173 -73672581 + L1ME4a LINE L1 5562 5856 -265 468 0 0 0 chr15 12024038 12024090 -73671664 + (CA)n Simple_repeat Simple_repeat 2 53 0 1385 143 29 97 chr15 12024151 12024430 -73671324 - AluJb SINE Alu -49 263 4 474 310 69 0 chr15 12024672 12024817 -73670937 + MIR SINE MIR 15 169 -93 21 57 0 0 chr15 12025125 12025160 -73670594 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr15 12025866 12025902 -73669852 + (T)n Simple_repeat Simple_repeat 1 36 0 274 246 156 96 chr15 12029315 12029370 -73666384 - MIR3 SINE MIR -1 207 157 2369 48 19 32 chr15 12029370 12029679 -73666075 - AluY SINE Alu -6 305 1 274 246 156 96 chr15 12029679 12029790 -73665964 - MIR3 SINE MIR -51 157 31 227 264 19 0 chr15 12030037 12030090 -73665664 - MIR3 SINE MIR -24 184 131 698 136 33 2 chr15 12030419 12030551 -73665203 + L1M3 LINE L1 5474 5613 -555 238 220 17 17 chr15 12030621 12030680 -73665074 - L2 LINE L2 -1 3271 3213 218 276 173 11 chr15 12030684 12030832 -73664922 + MIR SINE MIR 5 256 -6 1153 176 107 76 chr15 12031349 12031639 -73664115 + AluJo SINE Alu 1 299 -3 4433 125 26 30 chr15 12031656 12032393 -73663361 + MER50 LTR ERV1 1 734 0 812 164 62 0 chr15 12032393 12032533 -73663221 + FRAM SINE Alu 11 159 -17 859 233 173 63 chr15 12033290 12033847 -73661907 - LTR29 LTR ERV1 0 747 141 3126 154 38 62 chr15 12033847 12034555 -73661199 - LTR8 LTR ERV1 0 691 1 859 233 173 63 chr15 12034555 12034714 -73661040 - LTR29 LTR ERV1 -606 141 1 362 285 95 29 chr15 12035091 12035228 -73660526 - MIR SINE MIR -107 155 10 2187 173 51 27 chr15 12035262 12035712 -73660042 + LOR1b LTR ERV1 1 461 0 299 288 72 33 chr15 12035877 12036030 -73659724 + MIR SINE MIR 101 259 -3 321 270 29 66 chr15 12036404 12036541 -73659213 - L2 LINE L2 0 3313 3182 28 91 0 0 chr15 12036974 12037051 -73658703 + AT_rich Low_complexity Low_complexity 1 77 0 372 22 0 0 chr15 12037973 12038018 -73657736 + (GA)n Simple_repeat Simple_repeat 2 46 0 313 220 0 181 chr15 12038303 12038402 -73657352 - MIR SINE MIR -21 241 186 2958 162 41 2 chr15 12038402 12038964 -73656790 - L1MA4 LINE L1 -6 6294 5711 313 220 0 181 chr15 12038964 12039041 -73656713 - MIR SINE MIR -76 186 97 2811 215 23 0 chr15 12040911 12041473 -73654281 - L1MD3 LINE L1 0 7995 7421 252 243 40 14 chr15 12041478 12041552 -73654202 - MLT1F1 LTR MaLR -436 131 64 1193 243 11 8 chr15 12041598 12041865 -73653889 - L1MD3 LINE L1 -1023 6972 6705 29 21 0 21 chr15 12042066 12042086 -73653668 + AT_rich Low_complexity Low_complexity 1 20 -26 828 240 12 0 chr15 12042086 12042257 -73653497 + FAM SINE Alu 1 173 -2 29 21 0 21 chr15 12042257 12042283 -73653471 + AT_rich Low_complexity Low_complexity 20 46 0 1284 134 27 0 chr15 12042698 12042921 -73652833 + L1 LINE L1 4382 4610 -1536 11200 238 25 29 chr15 12042921 12043292 -73652462 - L1PA12 LINE L1 -2471 5113 4742 2567 64 0 0 chr15 12043292 12043603 -73652151 - AluY SINE Alu 0 311 1 11200 238 25 29 chr15 12043603 12043883 -73651871 - L1PA12 LINE L1 -2842 4742 4462 4643 36 0 2 chr15 12043883 12044439 -73651315 + L1PA5 LINE L1 5593 6147 -7 11200 238 25 29 chr15 12044439 12044565 -73651189 - L1PA12 LINE L1 -3122 4462 4337 2012 141 0 0 chr15 12044565 12044875 -73650879 - AluSx SINE Alu 0 310 1 11200 238 25 29 chr15 12044875 12047876 -73647878 - L1PA12 LINE L1 -3247 4337 1 858 168 46 55 chr15 12048160 12048398 -73647356 - L1MC5 LINE L1 -113 7848 7613 215 293 78 78 chr15 12048920 12049036 -73646718 - L2 LINE L2 -8 3305 3190 323 278 18 31 chr15 12050278 12050418 -73645336 - MIR SINE MIR -9 199 63 505 304 98 16 chr15 12050421 12050974 -73644780 - L1M4 LINE L1 -1781 4365 3658 1092 191 125 78 chr15 12050975 12051384 -73644370 - LTR37B LTR ERV1 -2 466 39 194 192 96 39 chr15 12052314 12052366 -73643388 - L2 LINE L2 -8 3264 3210 21 71 0 0 chr15 12052385 12052427 -73643327 + AT_rich Low_complexity Low_complexity 1 42 0 2115 111 23 13 chr15 12053132 12053438 -73642316 - AluSq SINE Alu -3 310 2 21 71 0 0 chr15 12054272 12054314 -73641440 + AT_rich Low_complexity Low_complexity 1 42 0 409 231 0 13 chr15 12054753 12054831 -73640923 - L2 LINE L2 -2 3270 3194 27 29 0 0 chr15 12054953 12054987 -73640767 + AT_rich Low_complexity Low_complexity 1 34 0 226 219 161 97 chr15 12055104 12055414 -73640340 - L1ME4a LINE L1 -3 6118 5789 318 316 88 45 chr15 12055526 12056100 -73639654 - L1 LINE L1 -1310 4836 4224 24 32 0 0 chr15 12057592 12057623 -73638131 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 59 73 chr15 12059918 12059986 -73635768 - L2 LINE L2 -11 3261 3195 1872 166 7 7 chr15 12061265 12061573 -73634181 - AluJo SINE Alu -4 308 1 22 56 0 0 chr15 12062364 12062400 -73633354 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr15 12063111 12063144 -73632610 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr15 12065174 12065202 -73630552 + (T)n Simple_repeat Simple_repeat 1 28 0 2579 37 0 0 chr15 12068058 12068355 -73627399 + AluY SINE Alu 1 297 -14 1160 234 32 41 chr15 12068643 12068842 -73626912 + L2 LINE L2 2423 2619 -695 2192 99 3 3 chr15 12068842 12069135 -73626619 - AluSq SINE Alu -20 293 1 1160 234 32 41 chr15 12069135 12069251 -73626503 + L2 LINE L2 2619 2735 -579 1324 175 91 29 chr15 12069625 12069899 -73625855 - AluJo SINE Alu -21 291 1 723 326 23 16 chr15 12069909 12070167 -73625587 - MIR SINE MIR 0 262 3 196 283 128 47 chr15 12070319 12070446 -73625308 + MIR SINE MIR 7 150 -64 332 348 89 0 chr15 12070845 12070980 -73624774 - L2 LINE L2 0 3272 3126 22 0 0 0 chr15 12071351 12071373 -73624381 + AT_rich Low_complexity Low_complexity 1 22 0 2510 65 3 0 chr15 12071572 12071879 -73623875 - AluSq SINE Alu -5 308 1 1635 160 91 9 chr15 12072034 12072352 -73623402 + MER2 DNA MER2_type 1 344 0 299 80 0 0 chr15 12074550 12074600 -73621154 + Alu SINE Alu 252 301 -1 1755 155 26 16 chr15 12075261 12075565 -73620189 - AluJo SINE Alu -5 307 1 2401 55 0 7 chr15 12075578 12075871 -73619883 - AluY SINE Alu -16 295 5 213 94 0 0 chr15 12076571 12076603 -73619151 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 183 256 0 0 chr15 12076613 12076652 -73619102 - L2 LINE L2 -48 3224 3186 215 364 57 0 chr15 12078651 12078739 -73617015 - L2 LINE L2 -24 3248 3156 2372 60 0 0 chr15 12079752 12080083 -73615671 + AluY SINE Alu 1 331 0 23 33 0 0 chr15 12080765 12080795 -73614959 + AT_rich Low_complexity Low_complexity 1 30 0 242 384 114 7 chr15 12080862 12081143 -73614611 - L3b LINE CR1 -157 1426 1116 1920 34 151 8 chr15 12081335 12081600 -73614154 - AluY SINE Alu -8 303 1 2495 45 0 29 chr15 12081650 12081962 -73613792 - AluY SINE Alu -8 303 1 548 321 21 21 chr15 12082698 12082891 -73612863 - MIR SINE MIR -57 205 13 192 40 0 0 chr15 12083110 12083135 -73612619 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 738 294 30 21 chr15 12083717 12083908 -73611846 + MIR SINE MIR 2 197 -65 1249 219 88 12 chr15 12083908 12084227 -73611527 - MER2 DNA MER2_type 0 344 2 738 294 30 21 chr15 12084227 12084270 -73611484 + MIR SINE MIR 197 238 -24 2066 154 45 38 chr15 12084300 12084491 -73611263 + MSTB LTR MaLR 1 189 -237 2269 95 7 0 chr15 12084491 12084797 -73610957 + AluSx SINE Alu 1 308 -4 2066 154 45 38 chr15 12084797 12085002 -73610752 + MSTB LTR MaLR 189 400 -26 1884 85 7 44 chr15 12085019 12085312 -73610442 - L1PB1 LINE L1 -3 7567 7286 * 7977 88 4 14 chr15 12085311 12086782 -73608972 + L1PA8 LINE L1 4190 5651 -521 2372 68 0 3 chr15 12086782 12087079 -73608675 - AluY SINE Alu -18 293 1 4135 68 0 0 chr15 12087079 12087596 -73608158 + L1PA8 LINE L1 5656 6172 0 7977 88 4 14 chr15 12087079 12087593 -73608161 + L1PA8 LINE L1 5651 6169 -3 5952 169 17 0 chr15 12087597 12089303 -73606451 - L1PB1 LINE L1 -280 7290 5557 275 88 14 0 chr15 12089303 12089345 -73606409 + MSTB LTR MaLR 380 427 -1 9672 165 36 17 chr15 12089346 12090632 -73605122 + MSTB-int LTR MaLR 1 1326 -325 2189 116 0 7 chr15 12090632 12090935 -73604819 + AluSc SINE Alu 1 301 -8 9672 165 36 17 chr15 12090935 12091268 -73604486 + MSTB-int LTR MaLR 1326 1651 0 2388 172 32 2 chr15 12091269 12091676 -73604078 + MSTB LTR MaLR 2 420 -6 1474 170 91 65 chr15 12091681 12092022 -73603732 + MLT1A2 LTR MaLR 25 374 0 1380 51 0 0 chr15 12092821 12092979 -73602775 - L1PA3 LINE L1 -2 6153 5996 1741 230 8 0 chr15 12093502 12093893 -73601861 - L1PB1 LINE L1 -3137 4428 4035 1634 117 8 30 chr15 12093896 12094162 -73601592 - L1PB1 LINE L1 -4250 3315 3056 1214 178 14 0 chr15 12094166 12094380 -73601374 - AluJb SINE Alu -10 302 86 18095 154 36 7 chr15 12094381 12097358 -73598396 - L1PB1 LINE L1 -4501 3064 2 2407 170 24 19 chr15 12097358 12097782 -73597972 - MSTB LTR MaLR 0 426 1 604 285 86 77 chr15 12097782 12098038 -73597716 - L2 LINE L2 -2404 910 649 2219 120 0 3 chr15 12098038 12098346 -73597408 + AluSg SINE Alu 1 307 -3 604 285 86 77 chr15 12098346 12098426 -73597328 - L2 LINE L2 -2665 649 571 614 278 37 42 chr15 12098498 12098764 -73596990 + L1MC4a LINE L1 5536 5750 -371 1990 146 0 3 chr15 12098764 12099065 -73596689 + AluSq SINE Alu 1 300 -13 614 278 37 42 chr15 12099065 12099140 -73596614 + L1MC4a LINE L1 5750 5824 -297 612 320 173 18 chr15 12099431 12099871 -73595883 + L2 LINE L2 2806 3313 0 319 242 88 84 chr15 12100952 12101167 -73594587 + LTR16A1 LTR ERVL 181 396 -61 229 121 0 0 chr15 12101332 12101365 -73594389 + LTR16B LTR ERVL 255 287 -177 2558 48 0 10 chr15 12102095 12102406 -73593348 + AluY SINE Alu 1 308 -3 338 188 0 26 chr15 12103564 12103681 -73592073 + GA-rich Low_complexity Low_complexity 1 114 0 2862 88 58 21 chr15 12104367 12104799 -73590955 + LTR7 LTR ERV1 1 448 -2 17856 89 8 10 chr15 12104801 12107915 -73587839 + HERVH LTR ERV1 1 2987 -4726 940 128 20 0 chr15 12107909 12108057 -73587697 + HERVH LTR ERV1 3140 3290 -4423 * 938 149 0 7 chr15 12108047 12108195 -73587559 + HERVH LTR ERV1 3492 3638 -4075 * 1204 144 3 4 chr15 12108185 12108546 -73587208 + HERVH LTR ERV1 4744 5149 -2564 2685 96 42 35 chr15 12108547 12109142 -73586612 + HERVH LTR ERV1 5600 7713 0 2840 97 58 21 chr15 12109142 12109574 -73586180 + LTR7 LTR ERV1 1 448 -2 447 327 67 0 chr15 12110527 12110692 -73585062 + MIR3 SINE MIR 23 198 -10 2532 50 0 0 chr15 12110971 12111268 -73584486 - AluY SINE Alu -8 303 7 2218 77 81 5 chr15 12111624 12111988 -73583766 + LTR7 LTR ERV1 1 448 -2 236 184 61 0 chr15 12112034 12112083 -73583671 - L2 LINE L2 0 3313 3262 3153 162 52 35 chr15 12113838 12114494 -73581260 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr15 12114540 12114562 -73581192 + AT_rich Low_complexity Low_complexity 1 22 0 222 130 19 37 chr15 12115594 12115613 -73580141 + A-rich Low_complexity Low_complexity 5 23 -34 2412 61 0 49 chr15 12115613 12115940 -73579814 + AluY SINE Alu 1 311 0 222 130 19 37 chr15 12115940 12115974 -73579780 + A-rich Low_complexity Low_complexity 23 57 0 24 32 0 0 chr15 12116486 12116517 -73579237 + AT_rich Low_complexity Low_complexity 1 31 0 327 191 0 15 chr15 12116938 12117006 -73578748 - L1PA15 LINE L1 -9 6156 6090 203 327 66 66 chr15 12117116 12117373 -73578381 + L2 LINE L2 2635 2891 -423 1772 122 72 4 chr15 12117594 12117856 -73577898 + AluSq SINE Alu 6 285 -28 186 43 0 0 chr15 12117856 12117879 -73577875 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 460 239 103 0 chr15 12117905 12118022 -73577732 - MIR SINE MIR -27 235 107 474 207 8 25 chr15 12118099 12118220 -73577534 + MER103 DNA DNA 3 121 -45 183 255 59 20 chr15 12118262 12118313 -73577441 - MER5C DNA MER1_type -271 53 1 239 311 14 0 chr15 12118774 12118848 -73576906 + MIR3 SINE MIR 118 192 -16 2213 108 90 58 chr15 12120399 12120833 -73574921 - LTR7 LTR ERV1 -2 448 1 306 244 25 17 chr15 12121646 12121765 -73573989 + (TA)n Simple_repeat Simple_repeat 2 121 0 2012 177 48 11 chr15 12121766 12122200 -73573554 - L1MC3 LINE L1 -22 7763 7314 24 0 0 0 chr15 12123204 12123228 -73572526 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr15 12123503 12123537 -73572217 + (TG)n Simple_repeat Simple_repeat 1 34 0 443 323 68 0 chr15 12124179 12124340 -73571414 - MIR3 SINE MIR -3 205 34 2196 99 7 0 chr15 12124607 12124900 -73570854 + AluSg SINE Alu 1 295 -15 2412 86 3 0 chr15 12125841 12126144 -73569610 - AluSg SINE Alu -6 304 1 64 50 0 0 chr15 12126192 12126291 -73569463 + AT_rich Low_complexity Low_complexity 1 99 0 1915 154 0 0 chr15 12127301 12127586 -73568168 + AluJo SINE Alu 12 296 -16 1439 54 0 0 chr15 12128165 12128333 -73567421 + AluY SINE Alu 1 168 -143 688 197 47 8 chr15 12128452 12128605 -73567149 - L1MC2 LINE L1 0 6333 6175 1122 161 103 179 chr15 12128606 12129035 -73566719 - MSTD LTR MaLR 0 396 1 2824 228 166 19 chr15 12129086 12129822 -73565932 - MSTD-int LTR MaLR 0 1735 892 3639 196 18 31 chr15 12129835 12130564 -73565190 - MSTD-int LTR MaLR -970 765 45 4614 86 16 80 chr15 12130564 12131274 -73564480 - MER4A LTR ERV1 0 664 1 3639 196 18 31 chr15 12131274 12131318 -73564436 - MSTD-int LTR MaLR -1690 45 2 1325 226 77 64 chr15 12131318 12131656 -73564098 - MSTD LTR MaLR -2 394 49 2319 79 0 0 chr15 12131656 12131947 -73563807 + AluY SINE Alu 1 291 -20 1325 226 77 64 chr15 12131947 12131997 -73563757 - MSTD LTR MaLR -347 49 1 992 169 0 6 chr15 12131997 12132175 -73563579 - L1MC2 LINE L1 -162 6182 6006 196 292 0 0 chr15 12132409 12132457 -73563297 + L2 LINE L2 3020 3067 -205 183 243 54 54 chr15 12132475 12132549 -73563205 - L2 LINE L2 0 3313 3240 1898 152 0 32 chr15 12132952 12133261 -73562493 - AluJo SINE Alu -12 300 2 902 108 0 38 chr15 12133783 12133968 -73561786 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1875 133 31 3 chr15 12133969 12134378 -73561376 - AluSg SINE Alu 0 417 1 342 0 0 0 chr15 12134541 12134579 -73561175 + (CA)n Simple_repeat Simple_repeat 2 39 0 37 23 0 0 chr15 12135328 12135372 -73560382 + AT_rich Low_complexity Low_complexity 1 44 0 2048 159 10 0 chr15 12135585 12135893 -73559861 - AluJo SINE Alu -1 311 1 2621 113 8 24 chr15 12136043 12136413 -73559341 + THE1B LTR MaLR 1 364 0 394 314 127 37 chr15 12145374 12145673 -73550081 - L2 LINE L2 0 3313 2988 553 289 250 22 chr15 12145960 12146468 -73549286 + L2 LINE L2 178 801 -2513 403 263 51 51 chr15 12146475 12146692 -73549062 - MER112 DNA MER1_type -12 248 32 2088 87 0 60 chr15 12146694 12147020 -73548734 - AluY SINE Alu 0 308 1 1842 285 127 104 chr15 12147059 12147583 -73548171 + L2 LINE L2 807 1317 -1997 1346 7 0 0 chr15 12147583 12147729 -73548025 - AluYb8 SINE Alu -16 302 157 1842 285 127 104 chr15 12147729 12148815 -73546939 + L2 LINE L2 1317 2603 -711 386 321 66 29 chr15 12150425 12150699 -73545055 + L2 LINE L2 2982 3265 -48 268 306 10 10 chr15 12150752 12150850 -73544904 - L2 LINE L2 -674 2640 2543 901 309 139 23 chr15 12150890 12151414 -73544340 - L2 LINE L2 -351 2963 2379 468 197 111 0 chr15 12151991 12152108 -73543646 + MER94 DNA DNA 4 133 -1 28 22 0 22 chr15 12152456 12152469 -73543285 + AT_rich Low_complexity Low_complexity 1 13 -32 2078 118 0 10 chr15 12152469 12152758 -73542996 + AluSx SINE Alu 1 286 -26 28 22 0 22 chr15 12152758 12152790 -73542964 + AT_rich Low_complexity Low_complexity 13 45 0 41 0 0 0 chr15 12154086 12154127 -73541627 + AT_rich Low_complexity Low_complexity 1 41 0 296 368 7 15 chr15 12154939 12155075 -73540679 - MIR3 SINE MIR -50 158 24 1091 262 86 66 chr15 12157902 12158493 -73537261 + L1MC4 LINE L1 7297 7899 -143 203 272 12 0 chr15 12158503 12158584 -73537170 + (TA)n Simple_repeat Simple_repeat 2 83 0 1622 152 12 0 chr15 12158773 12159017 -73536737 + AluJb SINE Alu 1 247 -65 225 0 0 0 chr15 12159017 12159042 -73536712 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 803 110 59 0 chr15 12159071 12159207 -73536547 + L1MA7 LINE L1 6148 6291 0 303 219 406 0 chr15 12160819 12160942 -73534812 + MER5B DNA MER1_type 1 173 -5 2250 84 0 39 chr15 12161551 12161885 -73533869 + AluSp SINE Alu 1 313 0 998 250 49 46 chr15 12162448 12162732 -73533022 + L3 LINE CR1 1292 1576 -1 195 100 0 0 chr15 12162785 12162815 -73532939 + (A)n Simple_repeat Simple_repeat 1 30 0 3794 165 26 32 chr15 12163493 12163729 -73532025 - L1 LINE L1 -1183 4963 4727 2031 132 0 17 chr15 12163729 12164024 -73531730 + AluSx SINE Alu 1 290 -22 3794 165 26 32 chr15 12164024 12164557 -73531197 - L1 LINE L1 -1419 4727 4199 2127 174 7 7 chr15 12164559 12164990 -73530764 + L1MA4 LINE L1 4973 5403 -743 9113 108 14 1 chr15 12165005 12166262 -73529492 + HSMAR1 DNA Mariner 2 1274 -13 4725 163 13 5 chr15 12166265 12167120 -73528634 + L1MA4 LINE L1 5434 6295 -5 556 287 117 30 chr15 12167124 12167513 -73528241 + L1ME LINE L1 924 1512 -4904 411 289 53 41 chr15 12167517 12167760 -73527994 + L1ME LINE L1 1550 1809 -4628 1842 149 13 13 chr15 12167760 12168061 -73527693 + AluJb SINE Alu 1 301 -11 411 289 53 41 chr15 12168061 12168083 -73527671 + L1ME LINE L1 1809 1829 -4608 821 149 29 6 chr15 12168085 12168259 -73527495 + GA-rich Low_complexity Low_complexity 1 178 0 332 279 9 65 chr15 12168259 12168474 -73527280 + L1ME LINE L1 1826 2028 -4579 515 268 77 5 chr15 12168817 12169049 -73526705 + L1ME LINE L1 2411 2624 -3802 945 270 105 0 chr15 12169065 12169435 -73526319 + L1ME LINE L1 2698 3106 -3320 31 0 0 0 chr15 12169552 12169583 -73526171 + AT_rich Low_complexity Low_complexity 1 31 0 1910 150 3 0 chr15 12170243 12170530 -73525224 + AluSx SINE Alu 1 288 -24 34 24 0 0 chr15 12170546 12170587 -73525167 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr15 12171582 12171603 -73524151 + AT_rich Low_complexity Low_complexity 1 21 0 1523 167 67 90 chr15 12171716 12172148 -73523606 - LTR8A LTR ERV1 -305 422 1 950 210 23 78 chr15 12172148 12172457 -73523297 + L1ME3A LINE L1 5879 6170 0 1985 203 96 84 chr15 12172570 12173288 -73522466 - LTR8A LTR ERV1 0 727 1 357 267 159 20 chr15 12173428 12173623 -73522131 - HAL1 LINE L1 -1158 1349 1128 734 237 155 0 chr15 12174771 12174990 -73520764 + MIR SINE MIR 5 257 -5 433 289 54 89 chr15 12175449 12175819 -73519935 + HAL1 LINE L1 817 1173 -1334 1659 280 63 20 chr15 12175933 12176944 -73518810 + L1ME LINE L1 4842 5894 -556 1768 163 10 20 chr15 12177224 12177519 -73518235 - AluJo SINE Alu -19 293 2 524 273 136 38 chr15 12177619 12177883 -73517871 - L2 LINE L2 -94 3219 2930 1994 91 0 25 chr15 12178121 12178396 -73517358 - AluY SINE Alu -10 301 34 481 236 87 0 chr15 12178434 12178561 -73517193 + MIR SINE MIR 16 153 -55 21 0 0 0 chr15 12178892 12178913 -73516841 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr15 12179126 12179162 -73516592 + CT-rich Low_complexity Low_complexity 1 36 0 404 331 31 0 chr15 12179184 12179311 -73516443 + L2 LINE L2 3180 3310 -3 1897 115 33 63 chr15 12179545 12179911 -73515843 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr15 12180192 12180217 -73515537 + AT_rich Low_complexity Low_complexity 1 25 0 790 310 67 28 chr15 12182328 12182715 -73513039 - LTR16C LTR ERVL 0 491 90 26 50 0 0 chr15 12182943 12182983 -73512771 + AT_rich Low_complexity Low_complexity 1 40 0 252 307 16 55 chr15 12183411 12183538 -73512216 + MIR SINE MIR 134 255 -7 2883 77 5 0 chr15 12184445 12184821 -73510933 + L1PA11 LINE L1 5530 5907 -267 11658 114 34 52 chr15 12185170 12188161 -73507593 - L1PA11 LINE L1 0 6174 3221 8768 31 1 0 chr15 12188161 12189753 -73506001 + L1PA3 LINE L1 4337 5930 -225 709 281 109 13 chr15 12189857 12190470 -73505284 - L1M4 LINE L1 -2655 3491 2820 1598 175 35 0 chr15 12190545 12190859 -73504895 - L1MB2 LINE L1 -25 5970 5646 762 163 16 0 chr15 12190860 12190989 -73504765 - AluJb SINE Alu -181 131 1 10948 218 39 29 chr15 12190996 12192960 -73502794 - L1MB2 LINE L1 -341 5651 3708 2030 132 10 10 chr15 12192960 12193271 -73502483 - AluSx SINE Alu -1 311 1 10948 218 39 29 chr15 12193271 12195255 -73500499 - L1MB2 LINE L1 -2284 3708 1642 1555 195 26 20 chr15 12195255 12195557 -73500197 - AluJo SINE Alu -8 304 1 10948 218 39 29 chr15 12195557 12195583 -73500171 - L1MB2 LINE L1 -4350 1642 1618 14575 38 2 1 chr15 12195822 12198357 -73497397 - L1PA4 LINE L1 -5 6150 3614 20056 73 2 0 chr15 12198362 12200962 -73494792 - L1PA4 LINE L1 -3535 2611 7 7654 146 26 10 chr15 12200965 12202454 -73493300 - L1PBa LINE L1 -4098 2765 1093 2638 228 89 21 chr15 12202458 12203308 -73492446 - L1PBa LINE L1 -5818 1045 138 2074 259 39 34 chr15 12203315 12203998 -73491756 - L1MB2 LINE L1 -4796 1095 417 1385 316 64 58 chr15 12204015 12204905 -73490849 - L1M3a LINE L1 -5226 729 2 * 2454 252 26 19 chr15 12204903 12205687 -73490067 - L1M4c LINE L1 -4522 1379 400 350 293 18 61 chr15 12205845 12206009 -73489745 - L1M4c LINE L1 -5487 404 248 326 317 86 62 chr15 12206118 12206408 -73489346 - L1MB2 LINE L1 -5503 388 92 934 287 58 37 chr15 12206502 12207375 -73488379 - L1MEc LINE L1 -3316 2899 2041 370 241 70 70 chr15 12207548 12207748 -73488006 - L1MEc LINE L1 -4443 1772 1574 630 277 89 29 chr15 12208065 12208564 -73487190 - L1MEc LINE L1 -4669 1637 1112 547 226 19 45 chr15 12208810 12208965 -73486789 + L2 LINE L2 3163 3313 0 315 0 0 0 chr15 12209767 12209802 -73485952 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr15 12210029 12210051 -73485703 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 12210652 12210679 -73485075 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr15 12211211 12211271 -73484483 + AT_rich Low_complexity Low_complexity 1 60 0 6129 181 36 15 chr15 12213251 12215076 -73480678 + L1MC1 LINE L1 4463 6328 -5 21 0 0 0 chr15 12217276 12217297 -73478457 + AT_rich Low_complexity Low_complexity 1 21 0 27495 35 4 0 chr15 12219691 12223606 -73472148 - L1PA4 LINE L1 -214 5941 2018 208 275 55 22 chr15 12223756 12223847 -73471907 + L2 LINE L2 3220 3313 0 3472 136 45 7 chr15 12223948 12224528 -73471226 + MER7C DNA MER2_type 1 602 0 242 226 19 0 chr15 12224540 12224593 -73471161 + (CATA)n Simple_repeat Simple_repeat 1 54 0 347 60 20 0 chr15 12224892 12224942 -73470812 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 807 221 0 0 chr15 12225454 12225612 -73470142 - FRAM SINE Alu -18 158 1 6631 65 8 2 chr15 12225680 12226577 -73469177 + L1PA7 LINE L1 5264 6165 0 900 203 145 0 chr15 12226580 12226787 -73468967 - MLT1D LTR MaLR -124 381 145 248 253 96 82 chr15 12227829 12227975 -73467779 + MIR3 SINE MIR 51 198 -10 196 383 0 0 chr15 12228421 12228481 -73467273 + L2 LINE L2 3252 3311 -2 2055 57 57 37 chr15 12229732 12230029 -73465725 + AluY SINE Alu 1 303 -8 207 0 0 0 chr15 12230029 12230052 -73465702 + (CA)n Simple_repeat Simple_repeat 2 24 0 285 295 16 66 chr15 12230969 12231091 -73464663 - L2 LINE L2 0 3272 3157 246 246 58 0 chr15 12231951 12232020 -73463734 - L2 LINE L2 -1082 2232 2160 327 253 89 0 chr15 12232041 12232120 -73463634 - MER20 DNA MER1_type -110 109 24 1120 88 0 0 chr15 12232120 12232268 -73463486 + AluSp/q SINE Alu 162 309 -4 228 233 0 0 chr15 12232295 12232338 -73463416 - LTR33 LTR ERVL -153 368 326 7251 40 8 0 chr15 12232342 12233347 -73462407 + L1PA7 LINE L1 5135 6146 -8 21 0 0 0 chr15 12234470 12234491 -73461263 + AT_rich Low_complexity Low_complexity 1 21 0 1779 214 92 83 chr15 12235257 12235536 -73460218 + L1MC5 LINE L1 7025 7300 -661 883 179 40 30 chr15 12235536 12235737 -73460017 + MER3 DNA MER1_type 3 205 -4 1779 214 92 83 chr15 12235737 12236349 -73459405 + L1MC5 LINE L1 7300 7924 -37 302 212 153 17 chr15 12236452 12236570 -73459184 + L1MB8 LINE L1 93 226 -6633 2709 215 75 68 chr15 12236919 12237701 -73458053 + L1MB8 LINE L1 5511 6312 -677 2358 104 0 7 chr15 12237701 12238009 -73457745 + AluSg SINE Alu 5 310 0 2709 215 75 68 chr15 12238009 12238685 -73457069 + L1MB8 LINE L1 6312 6982 -7 1437 225 70 100 chr15 12238767 12239326 -73456428 - MLT1E LTR MaLR 0 593 1 896 235 20 20 chr15 12239515 12239719 -73456035 - MIR SINE MIR 0 262 59 1873 139 65 46 chr15 12240470 12240518 -73455236 - THE1C LTR MaLR 0 375 329 1874 138 76 17 chr15 12240518 12240872 -73454882 - THE1C LTR MaLR 0 375 1 1873 139 65 46 chr15 12240872 12241191 -73454563 - THE1C LTR MaLR -46 329 1 6952 118 10 27 chr15 12241191 12242270 -73453484 - THE1C-int LTR MaLR 0 1580 520 15523 61 1 1 chr15 12242370 12244316 -73451438 - L1P LINE L1 -4193 1953 7 468 349 92 56 chr15 12244870 12245602 -73450152 - L2 LINE L2 -3 3269 2530 1257 226 173 119 chr15 12245618 12246132 -73449622 - MER39 LTR ERV1 0 707 1 201 345 14 36 chr15 12246141 12246280 -73449474 - L2 LINE L2 -811 2503 2368 518 276 174 5 chr15 12246654 12246850 -73448904 + MIR SINE MIR 20 248 -14 709 264 48 60 chr15 12246908 12247158 -73448596 + MIR SINE MIR 2 248 -14 199 314 0 58 chr15 12247384 12247470 -73448284 - L3 LINE CR1 -314 1263 1183 27 29 0 0 chr15 12248991 12249025 -73446729 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 12249650 12249671 -73446083 + AT_rich Low_complexity Low_complexity 1 21 0 1429 285 168 12 chr15 12249740 12250200 -73445554 + HAL1 LINE L1 11 582 -1925 423 0 0 0 chr15 12250200 12250247 -73445507 + (CA)n Simple_repeat Simple_repeat 2 48 0 1429 285 168 12 chr15 12250247 12250368 -73445386 + HAL1 LINE L1 582 683 -1824 276 269 39 29 chr15 12250401 12250505 -73445249 + MER21B LTR ERV1 1 105 -758 * 3769 221 55 9 chr15 12250504 12251301 -73444453 + MER21B LTR ERV1 19 852 -11 3601 255 79 44 chr15 12251307 12252877 -73442877 + HAL1 LINE L1 740 2364 -143 261 396 0 0 chr15 12253587 12253746 -73442008 + (TGG)n Simple_repeat Simple_repeat 1 159 0 395 278 93 0 chr15 12255064 12255215 -73440539 + L1ME4a LINE L1 5594 5758 -363 268 226 83 61 chr15 12255314 12255495 -73440259 + L1ME4a LINE L1 5807 5991 -130 7728 138 17 10 chr15 12255699 12255839 -73439915 - L1MA2 LINE L1 -103 6201 6063 1561 199 20 13 chr15 12255839 12256140 -73439614 - AluJb SINE Alu -9 303 1 7728 138 17 10 chr15 12256140 12258263 -73437491 - L1MA2 LINE L1 -241 6063 3918 474 336 154 40 chr15 12258681 12259407 -73436347 - L2 LINE L2 -514 2800 1992 348 350 10 0 chr15 12259647 12259747 -73436007 + L2 LINE L2 3197 3297 -16 1639 298 95 81 chr15 12259848 12261729 -73434025 - L2 LINE L2 -106 3207 1238 182 329 47 24 chr15 12262724 12262809 -73432945 + MIR3 SINE MIR 85 171 -37 27 108 0 0 chr15 12262984 12263095 -73432659 + AT_rich Low_complexity Low_complexity 1 111 0 6042 166 37 5 chr15 12264077 12265489 -73430265 + L1MC1 LINE L1 4873 6322 -11 319 347 39 20 chr15 12265493 12266055 -73429699 - L1MEd LINE L1 -3386 2743 2171 258 273 86 65 chr15 12266839 12267257 -73428497 - L1MEd LINE L1 -4882 1237 811 1224 93 82 0 chr15 12268374 12268556 -73427198 + MER30 DNA MER1_type 1 197 -33 339 25 0 0 chr15 12271388 12271428 -73424326 + (CA)n Simple_repeat Simple_repeat 2 41 0 5606 200 24 50 chr15 12271790 12272834 -73422920 + L1 LINE L1 2146 3216 -2930 224 30 30 0 chr15 12272834 12272867 -73422887 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1930 114 7 4 chr15 12272873 12273145 -73422609 - AluSg SINE Alu -37 273 1 5606 200 24 50 chr15 12273145 12273635 -73422119 + L1 LINE L1 3221 3647 -2499 548 358 83 26 chr15 12274013 12274432 -73421322 - L2 LINE L2 -458 2856 2414 6019 167 25 17 chr15 12274750 12276961 -73418793 - L1MA9 LINE L1 -7 6305 4078 263 188 43 0 chr15 12277923 12277992 -73417762 + (TA)n Simple_repeat Simple_repeat 2 73 0 339 96 0 0 chr15 12277996 12278048 -73417706 + (TG)n Simple_repeat Simple_repeat 2 53 0 284 86 0 57 chr15 12278111 12278181 -73417573 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 162 0 0 chr15 12279337 12279374 -73416380 + A-rich Low_complexity Low_complexity 1 37 0 627 214 10 112 chr15 12280514 12280720 -73415034 - MARNA DNA Mariner -65 521 337 363 270 100 87 chr15 12280911 12281211 -73414543 - L3 LINE CR1 -173 1404 1101 1051 329 29 27 chr15 12281481 12281964 -73413790 - L3 LINE CR1 -566 1011 528 207 0 0 0 chr15 12283287 12283310 -73412444 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 212 349 46 37 chr15 12283705 12283814 -73411940 - MIR SINE MIR -79 129 20 1297 79 0 0 chr15 12284125 12284289 -73411465 - AluY SINE Alu -18 293 130 442 242 0 76 chr15 12284289 12284446 -73411308 + MER5B DNA MER1_type 34 178 0 1222 135 17 59 chr15 12285134 12285371 -73410383 + L1PA15 LINE L1 5938 6164 -1 677 265 110 0 chr15 12285827 12286027 -73409727 - MER58A DNA MER1_type -2 222 1 757 219 11 38 chr15 12286035 12286218 -73409536 - MER5B DNA MER1_type 0 178 1 1790 190 0 3 chr15 12287092 12287403 -73408351 - AluJb SINE Alu 0 312 3 1021 179 26 0 chr15 12287534 12287729 -73408025 + MER57A LTR ERV1 3 202 -201 1896 147 60 9 chr15 12287745 12288079 -73407675 + MER61C LTR ERV1 84 434 0 595 213 14 118 chr15 12288079 12288312 -73407442 + MER61C-int LTR ERV1 2 470 -5032 311 264 0 23 chr15 12288429 12288516 -73407238 + MER61C-int LTR ERV1 272 356 -4861 2371 57 0 0 chr15 12288517 12288850 -73406904 + AluY SINE Alu 2 334 0 382 125 0 0 chr15 12288867 12288923 -73406831 + Alu SINE Alu 239 294 -8 430 141 141 58 chr15 12288923 12289044 -73406710 + MER61C-int LTR ERV1 347 477 -4740 987 117 113 27 chr15 12289072 12289308 -73406446 + MER61C-int LTR ERV1 695 4128 -1089 * 3018 165 68 26 chr15 12289306 12290576 -73405178 + MER61C-int LTR ERV1 499 4918 -299 705 130 0 0 chr15 12290587 12290695 -73405059 - AluSg/x SINE Alu -10 300 193 2590 153 7 15 chr15 12290695 12291174 -73404580 + MER61C-int LTR ERV1 1213 2010 -3576 1942 153 32 3 chr15 12291161 12291508 -73404246 + MER61C-int LTR ERV1 4041 4397 -3140 * 7365 126 23 27 chr15 12291500 12292972 -73402782 + MER61C-int LTR ERV1 2831 5217 0 560 189 18 0 chr15 12292987 12293098 -73402656 + MER61C LTR ERV1 84 196 -238 6993 59 1 5 chr15 12293098 12294149 -73401605 + L1PA7 LINE L1 5102 6149 -5 4230 177 35 25 chr15 12294224 12295394 -73400360 + L1MB8 LINE L1 4999 6176 -2 566 289 81 60 chr15 12295587 12296033 -73399721 + LTR68 LTR ERV1 12 466 -274 3958 141 74 16 chr15 12297763 12298465 -73397289 + Tigger2 DNA MER2_type 2 744 -1974 1648 171 43 0 chr15 12298551 12298850 -73396904 - AluJo SINE Alu 0 312 1 1575 128 12 0 chr15 12298850 12299093 -73396661 + Tigger2 DNA MER2_type 2473 2718 0 2203 72 0 4 chr15 12299202 12299480 -73396274 - AluY SINE Alu -14 297 21 394 235 12 0 chr15 12300835 12300916 -73394838 + L1MC5 LINE L1 6712 6793 -1168 599 226 5 115 chr15 12300920 12301137 -73394617 + L1ME3A LINE L1 5698 5890 -280 21 0 0 0 chr15 12301184 12301205 -73394549 + AT_rich Low_complexity Low_complexity 1 21 0 326 319 60 42 chr15 12303671 12303837 -73391917 + MIR SINE MIR 20 188 -74 742 251 172 52 chr15 12303847 12304064 -73391690 + L2 LINE L2 2453 2642 -672 2426 66 0 0 chr15 12304064 12304367 -73391387 + AluY SINE Alu 4 306 -5 742 251 172 52 chr15 12304367 12304555 -73391199 + L2 LINE L2 2642 2907 -407 218 225 0 0 chr15 12304537 12304577 -73391177 + L2 LINE L2 3008 3047 -266 * 188 277 21 0 chr15 12304614 12304661 -73391093 + L2 LINE L2 3216 3263 -9 * 219 284 74 12 chr15 12304659 12304740 -73391014 - MIR SINE MIR -152 110 25 234 0 0 0 chr15 12304818 12304844 -73390910 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr15 12306208 12306231 -73389523 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr15 12306355 12306391 -73389363 + AT_rich Low_complexity Low_complexity 1 36 0 265 279 77 87 chr15 12307773 12308085 -73387669 + L3 LINE CR1 631 939 -638 189 94 0 0 chr15 12308792 12308824 -73386930 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2338 76 0 0 chr15 12308828 12309118 -73386636 - AluSg SINE Alu -20 290 1 1668 144 58 17 chr15 12309295 12309587 -73386167 - AluSx SINE Alu -8 304 1 1358 147 5 23 chr15 12309712 12309930 -73385824 - AluSx SINE Alu -98 214 1 674 281 75 20 chr15 12309947 12310146 -73385608 + MIR SINE MIR 43 252 -10 293 181 0 12 chr15 12310170 12310239 -73385515 + (CTA)n Simple_repeat Simple_repeat 2 71 -12 1141 186 115 50 chr15 12310239 12310562 -73385192 + MER2 DNA MER2_type 1 344 0 293 181 0 12 chr15 12310562 12310575 -73385179 + (CTA)n Simple_repeat Simple_repeat 71 83 0 311 256 78 32 chr15 12311097 12311273 -73384481 - L1MA10 LINE L1 -1 6333 5990 1420 182 14 120 chr15 12311428 12311846 -73383908 - MLT1A2 LTR MaLR 0 374 1 257 324 116 31 chr15 12311848 12312107 -73383647 - L2 LINE L2 -997 2317 2037 309 376 108 9 chr15 12312167 12312380 -73383374 - MIR SINE MIR -9 253 20 212 250 75 38 chr15 12312930 12313010 -73382744 - MIR SINE MIR -49 213 131 1841 107 44 7 chr15 12313402 12313705 -73382049 - AluSg SINE Alu 0 313 1 1707 263 82 26 chr15 12314317 12315194 -73380560 + L2 LINE L2 2384 3311 -2 755 294 119 36 chr15 12315519 12316097 -73379657 + L1ME4a LINE L1 5495 6120 -1 198 304 43 75 chr15 12316180 12316341 -73379413 - L2 LINE L2 0 3313 3158 2234 102 3 0 chr15 12316346 12316640 -73379114 + AluSg SINE Alu 1 295 -15 645 228 34 7 chr15 12318387 12318536 -73377218 + AluJb SINE Alu 137 289 -23 27 0 0 0 chr15 12318536 12318563 -73377191 + AT_rich Low_complexity Low_complexity 1 27 0 5444 144 135 19 chr15 12318949 12319617 -73376137 - Tigger3b DNA MER2_type -1811 1217 628 2206 116 0 3 chr15 12319617 12319928 -73375826 + AluSx SINE Alu 3 312 0 5444 144 135 19 chr15 12319928 12320350 -73375404 - Tigger3b DNA MER2_type -2400 628 1 463 291 55 22 chr15 12320488 12320670 -73375084 - MIR SINE MIR -28 234 47 369 313 125 90 chr15 12321013 12321118 -73374636 - L2 LINE L2 -356 2958 2858 1972 129 0 7 chr15 12321118 12321439 -73374315 + AluSq SINE Alu 1 319 0 369 313 125 90 chr15 12321439 12321587 -73374167 - L2 LINE L2 -456 2858 2717 601 98 0 0 chr15 12321587 12321679 -73374075 - L1MB3 LINE L1 -12 6171 6080 369 313 125 90 chr15 12321679 12322261 -73373493 - L2 LINE L2 -597 2717 2062 2161 83 0 4 chr15 12322261 12322537 -73373217 + AluSx SINE Alu 14 288 -24 369 313 125 90 chr15 12322537 12322904 -73372850 - L2 LINE L2 -1252 2062 1710 326 279 115 36 chr15 12323313 12323478 -73372276 + MIR SINE MIR 36 213 -49 537 188 0 0 chr15 12324347 12324448 -73371306 + FAM SINE Alu 83 183 -2 1008 192 211 11 chr15 12324484 12324848 -73370906 - LTR33A LTR ERVL 0 523 87 253 226 206 10 chr15 12325098 12325200 -73370554 - L2 LINE L2 -6 3307 3186 755 258 131 7 chr15 12325958 12326241 -73369513 + L1MC4 LINE L1 5584 5901 -1907 405 0 0 0 chr15 12326246 12326291 -73369463 + (TG)n Simple_repeat Simple_repeat 1 45 0 218 317 37 24 chr15 12328202 12328284 -73367470 - L2 LINE L2 -86 3186 3104 28 0 0 0 chr15 12328390 12328418 -73367336 + AT_rich Low_complexity Low_complexity 1 28 0 335 326 11 0 chr15 12328523 12328612 -73367142 + MIR3 SINE MIR 67 156 -52 444 67 0 0 chr15 12330678 12330738 -73365016 + (CA)n Simple_repeat Simple_repeat 1 60 0 2657 109 5 29 chr15 12331435 12331846 -73363908 - THE1C-int LTR MaLR -1177 403 3 1581 184 73 20 chr15 12331850 12332204 -73363550 - THE1C LTR MaLR -2 373 1 201 147 0 0 chr15 12333720 12333754 -73362000 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1699 177 101 22 chr15 12334308 12334675 -73361079 - MSTD LTR MaLR 0 396 1 264 77 26 0 chr15 12335026 12335065 -73360689 - MLT2B2 LTR ERVL 0 515 476 369 0 0 0 chr15 12335068 12335109 -73360645 + (CA)n Simple_repeat Simple_repeat 2 42 0 227 235 0 7 chr15 12335123 12335259 -73360495 + (TA)n Simple_repeat Simple_repeat 1 135 0 300 309 21 0 chr15 12335259 12335356 -73360398 + L1MC4 LINE L1 6611 6709 -1333 230 163 41 0 chr15 12335364 12335413 -73360341 + L1MC4 LINE L1 6653 6703 -1339 1932 175 112 25 chr15 12335443 12335856 -73359898 - MLT2B1 LTR ERVL -13 541 43 754 255 22 81 chr15 12336126 12336397 -73359357 - MIR SINE MIR -1 261 7 567 241 87 51 chr15 12337473 12337726 -73358028 + MIR SINE MIR 1 262 0 2030 273 83 23 chr15 12338286 12338616 -73357138 + L1ME4a LINE L1 3932 4241 -1905 1965 155 28 36 chr15 12338616 12339009 -73356745 + MLT1B LTR MaLR 1 390 0 2030 273 83 23 chr15 12339009 12339716 -73356038 + L1ME4a LINE L1 4241 5147 -999 427 240 47 18 chr15 12339733 12339792 -73355962 + L1ME4a LINE L1 5219 5275 -895 2015 119 7 7 chr15 12339792 12340087 -73355667 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr15 12340087 12340111 -73355643 + (TA)n Simple_repeat Simple_repeat 2 25 0 427 240 47 18 chr15 12340111 12340296 -73355458 + L1ME4a LINE L1 5274 5469 -701 271 299 61 100 chr15 12340303 12340812 -73354942 + L2 LINE L2 2825 3313 0 683 227 0 0 chr15 12342348 12342480 -73353274 + FLAM_A SINE Alu 2 133 0 1712 100 128 0 chr15 12344288 12344561 -73351193 - AluSx SINE Alu 0 305 1 281 190 20 40 chr15 12345746 12345846 -73349908 + L1MC5 LINE L1 7828 7925 -36 202 226 0 19 chr15 12345846 12345899 -73349855 + A-rich Low_complexity Low_complexity 4 55 0 249 167 0 0 chr15 12346425 12346479 -73349275 + (TA)n Simple_repeat Simple_repeat 1 54 0 770 135 71 0 chr15 12347271 12347412 -73348342 - MIR SINE MIR -65 197 47 200 258 93 52 chr15 12347443 12347540 -73348214 + L2 LINE L2 2167 2267 -1047 200 325 26 39 chr15 12347640 12347794 -73347960 + L2 LINE L2 2702 2853 -461 204 305 171 0 chr15 12348065 12348170 -73347584 + L2 LINE L2 3191 3313 0 21 0 0 0 chr15 12350824 12350845 -73344909 + AT_rich Low_complexity Low_complexity 1 21 0 287 203 13 0 chr15 12351363 12351442 -73344312 + (TA)n Simple_repeat Simple_repeat 1 80 0 1556 205 10 0 chr15 12353454 12353752 -73342002 + AluJo SINE Alu 1 301 -11 484 207 207 7 chr15 12354552 12354697 -73341057 + MER5A DNA MER1_type 9 182 -7 712 282 46 18 chr15 12356304 12356630 -73339124 + L1ME4a LINE L1 5562 5896 -225 21 36 0 0 chr15 12356764 12356792 -73338962 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 43 43 chr15 12358592 12358661 -73337093 + L2 LINE L2 3225 3293 -20 1329 223 18 7 chr15 12358833 12358961 -73336793 + AluJo SINE Alu 1 126 -186 2482 75 0 0 chr15 12358961 12359269 -73336485 + AluY SINE Alu 1 308 -3 1329 223 18 7 chr15 12359269 12359418 -73336336 + AluJo SINE Alu 126 281 -31 564 289 147 5 chr15 12359877 12360081 -73335673 - MIR SINE MIR -2 260 28 21 82 0 0 chr15 12361429 12361478 -73334276 + AT_rich Low_complexity Low_complexity 1 49 0 291 270 67 22 chr15 12361623 12361712 -73334042 - L2 LINE L2 -8 3264 3172 368 322 75 7 chr15 12362375 12362521 -73333233 - MIR SINE MIR -57 205 50 212 175 0 0 chr15 12363742 12363782 -73331972 + A-rich Low_complexity Low_complexity 1 40 0 189 74 0 0 chr15 12366017 12366044 -73329710 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 318 316 171 5 chr15 12366321 12366514 -73329240 - L1ME4a LINE L1 -135 5986 5762 548 293 103 18 chr15 12366520 12366846 -73328908 - L1ME4a LINE L1 -436 5685 5309 1062 165 127 24 chr15 12367571 12367862 -73327892 - MER5C DNA MER1_type 0 324 4 561 216 181 21 chr15 12368071 12368274 -73327480 + MIR SINE MIR 33 262 0 209 321 71 27 chr15 12368514 12368698 -73327056 - L2 LINE L2 -11 3302 3111 1190 173 0 10 chr15 12369159 12369367 -73326387 + AluJb SINE Alu 83 288 -24 216 267 0 0 chr15 12370799 12370844 -73324910 - MIR SINE MIR -61 147 103 338 196 110 69 chr15 12372157 12372330 -73323424 + MER112 DNA MER1_type 33 212 -48 1814 125 194 8 chr15 12372609 12372970 -73322784 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr15 12373366 12373388 -73322366 + AT_rich Low_complexity Low_complexity 1 22 0 1959 122 17 10 chr15 12375000 12375288 -73320466 - AluSx SINE Alu -22 290 1 251 338 88 40 chr15 12375322 12375470 -73320284 - L2 LINE L2 0 3272 3118 287 366 59 30 chr15 12375850 12376222 -73319532 - L2 LINE L2 -656 2658 2276 249 302 0 0 chr15 12376271 12376324 -73319430 + polypurine Low_complexity Low_complexity 4 56 0 2100 126 0 10 chr15 12376340 12376642 -73319112 + AluSq SINE Alu 1 299 -14 59 38 0 0 chr15 12377151 12377231 -73318523 + AT_rich Low_complexity Low_complexity 1 80 0 718 259 72 56 chr15 12377479 12377614 -73318140 + HAL1 LINE L1 791 922 -1585 2356 90 3 0 chr15 12377614 12377924 -73317830 + AluSp SINE Alu 1 311 -2 718 259 72 56 chr15 12377924 12378290 -73317464 + HAL1 LINE L1 922 1300 -1207 431 306 53 34 chr15 12378373 12378579 -73317175 - MLT1K LTR MaLR -236 352 143 878 267 120 6 chr15 12378658 12379017 -73316737 + HAL1 LINE L1 1385 1784 -723 31 26 0 0 chr15 12380084 12380122 -73315632 + AT_rich Low_complexity Low_complexity 1 38 0 829 285 64 27 chr15 12381164 12381494 -73314260 + L2 LINE L2 2967 3308 -5 292 172 62 0 chr15 12382807 12382871 -73312883 + L1ME LINE L1 5773 5840 -281 226 319 90 0 chr15 12382941 12383085 -73312669 + MER103 DNA DNA 9 165 -1 23 0 0 0 chr15 12385460 12385483 -73310271 + AT_rich Low_complexity Low_complexity 1 23 0 276 312 130 47 chr15 12385596 12385811 -73309943 + MIR SINE MIR 30 262 0 28 29 0 0 chr15 12386323 12386358 -73309396 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr15 12386368 12386393 -73309361 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 12386403 12386425 -73309329 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 12386436 12386457 -73309297 + (TA)n Simple_repeat Simple_repeat 1 21 0 418 107 13 13 chr15 12386719 12386794 -73308960 + (TA)n Simple_repeat Simple_repeat 2 76 0 1534 76 5 0 chr15 12387792 12388002 -73307752 + L1PA7 LINE L1 5941 6151 -3 432 303 74 0 chr15 12389223 12389385 -73306369 + MER5B DNA MER1_type 2 175 -3 737 277 214 21 chr15 12390299 12391026 -73304728 - L2 LINE L2 -5 3308 2450 323 246 0 0 chr15 12391030 12391095 -73304659 + MIR SINE MIR 181 245 -17 4187 112 19 6 chr15 12391282 12391918 -73303836 - LTR9B LTR ERV1 0 644 1 1091 255 105 21 chr15 12393170 12393550 -73302204 - LTR16B LTR ERVL -2 462 51 426 292 23 38 chr15 12393673 12393962 -73301792 - MERVL LTR ERVL -204 5281 4557 693 333 35 23 chr15 12394082 12394478 -73301276 - ERVL LTR ERVL -895 4869 4469 404 251 49 77 chr15 12394501 12394684 -73301070 - LTR16B LTR ERVL -284 180 3 723 214 98 6 chr15 12395654 12395827 -73299927 - MIR SINE MIR -69 193 5 281 233 159 92 chr15 12396082 12396245 -73299509 - MER102a DNA MER1_type -9 321 148 1973 156 0 7 chr15 12396245 12396547 -73299207 + AluJo SINE Alu 1 300 -12 310 278 220 16 chr15 12396813 12397004 -73298750 + MIR SINE MIR 2 231 -31 323 192 19 115 chr15 12397004 12397108 -73298646 + L1MEc LINE L1 2052 2145 -4251 1971 137 30 3 chr15 12397112 12397411 -73298343 + AluSx SINE Alu 1 307 -5 1053 205 87 17 chr15 12397445 12397801 -73297953 + L1MEc LINE L1 2103 2483 -3913 339 274 52 22 chr15 12397917 12398052 -73297702 - L1MC4a LINE L1 -1871 5937 5799 443 326 10 16 chr15 12398710 12398897 -73296857 - MIR SINE MIR -51 211 29 228 208 0 21 chr15 12399760 12399808 -73295946 + MLT1I LTR MaLR 324 370 -39 370 358 49 57 chr15 12400125 12400283 -73295471 + L2 LINE L2 3029 3186 -86 822 305 99 25 chr15 12400283 12400768 -73294986 - LTR33 LTR ERVL 0 521 1 370 358 49 57 chr15 12400768 12400855 -73294899 + L2 LINE L2 3186 3272 0 1558 178 22 29 chr15 12401449 12401763 -73293991 + AluJo SINE Alu 1 312 0 26 0 0 0 chr15 12403186 12403212 -73292542 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 12404884 12404905 -73290849 + AT_rich Low_complexity Low_complexity 1 21 0 562 238 42 36 chr15 12404970 12405138 -73290616 + MIR SINE MIR 84 252 -10 2352 152 35 62 chr15 12405247 12405760 -73289994 + MLT1D LTR MaLR 7 505 0 220 242 16 0 chr15 12405776 12405838 -73289916 + (TTAA)n Simple_repeat Simple_repeat 2 64 0 264 295 161 18 chr15 12406191 12406303 -73289451 + MIR SINE MIR 20 147 -115 1920 187 15 47 chr15 12407549 12407950 -73287804 - MLT1B LTR MaLR 0 390 3 2248 80 43 13 chr15 12408013 12408314 -73287440 - AluY SINE Alu -1 310 1 5311 188 22 27 chr15 12412239 12412950 -73282804 - L1MB1 LINE L1 -3 6165 5452 369 0 0 0 chr15 12412950 12412991 -73282763 + (TG)n Simple_repeat Simple_repeat 2 42 0 5311 188 22 27 chr15 12412991 12414286 -73281468 - L1MB1 LINE L1 -716 5452 4166 403 256 113 0 chr15 12414287 12414420 -73281334 - MIR SINE MIR -48 214 67 1841 195 39 68 chr15 12414572 12415090 -73280664 + MLT1D LTR MaLR 1 503 -2 24 77 0 0 chr15 12415300 12415352 -73280402 + AT_rich Low_complexity Low_complexity 1 52 0 771 285 14 14 chr15 12415565 12415786 -73279968 - MIR SINE MIR 0 262 42 1784 176 17 36 chr15 12416593 12416633 -73279121 + L1PB4 LINE L1 5737 5776 -380 396 0 0 0 chr15 12416633 12416677 -73279077 + (TG)n Simple_repeat Simple_repeat 2 45 0 1784 176 17 36 chr15 12416677 12416930 -73278824 + L1PB4 LINE L1 5776 6031 -125 2289 109 0 0 chr15 12416930 12417232 -73278522 + AluSx SINE Alu 1 302 -10 1784 176 17 36 chr15 12417232 12417340 -73278414 + L1PB4 LINE L1 6031 6139 -17 260 274 0 0 chr15 12418050 12418112 -73277642 - L2 LINE L2 0 3313 3252 242 362 43 35 chr15 12418167 12418283 -73277471 + MIR SINE MIR 17 133 -75 212 306 0 42 chr15 12418927 12418999 -73276755 + L2 LINE L2 3200 3268 -4 335 311 156 0 chr15 12419045 12419212 -73276542 + MIR SINE MIR 65 257 -5 226 268 110 24 chr15 12419305 12419387 -73276367 + MIR3 SINE MIR 115 203 -5 21 0 0 0 chr15 12419967 12419988 -73275766 + AT_rich Low_complexity Low_complexity 1 21 0 510 121 48 0 chr15 12420556 12420639 -73275115 + L1MA2 LINE L1 6218 6304 0 2185 131 0 0 chr15 12421423 12421729 -73274025 + AluSq SINE Alu 1 306 -7 183 100 0 0 chr15 12421771 12421801 -73273953 + (TG)n Simple_repeat Simple_repeat 2 31 0 250 289 61 18 chr15 12422498 12422612 -73273142 + L1MC4 LINE L1 6614 6732 -1310 233 186 0 0 chr15 12423691 12423734 -73272020 + L2 LINE L2 3264 3306 -7 500 293 56 98 chr15 12423943 12424465 -73271289 - MLT1L LTR MaLR -7 608 5 327 288 152 44 chr15 12426460 12426894 -73268860 + L1ME LINE L1 5320 5800 -321 205 167 0 0 chr15 12428863 12428899 -73266855 + GA-rich Low_complexity Low_complexity 1 36 0 1920 157 3 0 chr15 12431591 12431885 -73263869 - AluSx SINE Alu -16 296 2 362 282 69 19 chr15 12432138 12432354 -73263400 - L1MDa LINE L1 -4516 1613 1387 264 290 48 65 chr15 12432507 12432800 -73262954 - L1MDa LINE L1 -4902 1217 930 1846 42 0 42 chr15 12432966 12433203 -73262551 - AluY SINE Alu -5 306 80 3767 170 42 0 chr15 12433537 12434227 -73261527 - L1PA16 LINE L1 -6 6160 5442 1544 84 55 8 chr15 12434271 12434509 -73261245 + LTR7 LTR ERV1 164 412 -38 273 326 73 45 chr15 12434526 12434704 -73261050 + MLT1J2 LTR MaLR 268 450 0 2360 123 8 35 chr15 12435528 12435902 -73259852 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr15 12435968 12436010 -73259744 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 12436070 12436105 -73259649 + AT_rich Low_complexity Low_complexity 1 35 0 667 338 113 31 chr15 12436215 12436692 -73259062 - LTR33 LTR ERVL 0 521 6 22 35 0 0 chr15 12436766 12436795 -73258959 + AT_rich Low_complexity Low_complexity 1 29 0 186 385 43 56 chr15 12437318 12437549 -73258205 + L2 LINE L2 2816 3043 -229 204 286 54 0 chr15 12438216 12438272 -73257482 + L2 LINE L2 3210 3268 -4 21 0 0 0 chr15 12439194 12439215 -73256539 + AT_rich Low_complexity Low_complexity 1 21 0 1051 239 42 24 chr15 12439348 12439833 -73255921 - MLT1E LTR MaLR -8 585 1 3455 169 77 54 chr15 12440941 12441600 -73254154 - L1MB5 LINE L1 -17 6157 5476 261 83 0 0 chr15 12441600 12441636 -73254118 + (TG)n Simple_repeat Simple_repeat 1 36 0 3455 169 77 54 chr15 12441636 12441768 -73253986 - L1MB5 LINE L1 -698 5476 5348 432 224 61 7 chr15 12441805 12441952 -73253802 - LTR37A LTR ERV1 -59 367 213 2544 242 36 36 chr15 12442127 12442843 -73252911 - MER21B LTR ERV1 -11 852 137 1621 167 9 3 chr15 12443027 12443345 -73252409 + L1MA4 LINE L1 5970 6289 -11 261 246 33 0 chr15 12443347 12443408 -73252346 + L1MB1 LINE L1 5893 5955 -213 256 305 70 55 chr15 12443418 12443546 -73252208 + L2 LINE L2 3139 3268 -4 316 327 65 33 chr15 12443673 12443887 -73251867 + L2 LINE L2 1951 2171 -1143 3998 175 38 31 chr15 12444162 12445066 -73250688 + L1 LINE L1 3835 4744 -1402 2308 166 30 129 chr15 12445100 12445222 -73250532 - MLT2B2 LTR ERVL -5 510 378 1580 197 0 43 chr15 12445222 12445521 -73250233 + AluJo SINE Alu 1 286 -26 2308 166 30 129 chr15 12445521 12445536 -73250218 - MLT2B2 LTR ERVL -137 378 363 2219 104 3 0 chr15 12445536 12445849 -73249905 + AluSp SINE Alu 1 314 0 243 0 0 0 chr15 12445851 12445878 -73249876 + (TG)n Simple_repeat Simple_repeat 2 28 0 2308 166 30 129 chr15 12445878 12446299 -73249455 - MLT2B2 LTR ERVL -153 362 1 306 360 82 44 chr15 12446299 12446704 -73249050 + L2 LINE L2 2179 2598 -716 282 310 70 45 chr15 12448301 12448501 -73247253 - MIR3 SINE MIR -3 205 1 387 313 125 7 chr15 12448641 12448785 -73246969 - MIR3 SINE MIR -7 201 41 245 315 0 0 chr15 12451866 12451920 -73243834 - MER5A DNA MER1_type -61 128 75 2356 236 63 26 chr15 12451920 12452194 -73243560 - L1MEc LINE L1 -939 5276 5014 411 21 0 0 chr15 12452194 12452242 -73243512 + (TG)n Simple_repeat Simple_repeat 1 48 0 2356 236 63 26 chr15 12452242 12452780 -73242974 - L1MEc LINE L1 -1201 5014 4434 1610 265 44 13 chr15 12452812 12453340 -73242414 - L1ME1 LINE L1 -5 6161 5618 290 200 187 0 chr15 12453340 12453415 -73242339 - L1ME LINE L1 -501 5663 5575 * 1126 240 42 0 chr15 12453414 12453697 -73242057 - L1MEc LINE L1 -1769 4446 4152 * 4219 236 38 33 chr15 12453690 12455144 -73240610 - L1MEc LINE L1 -2458 3757 2297 472 250 23 0 chr15 12455284 12455412 -73240342 - L1MA10 LINE L1 -9 6325 6195 3465 281 79 40 chr15 12455447 12457570 -73238184 - L1MEc LINE L1 -4144 2252 46 213 39 0 0 chr15 12457591 12457617 -73238137 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1621 203 3 11 chr15 12457967 12458284 -73237470 + AluJo SINE Alu 1 315 0 21 36 0 0 chr15 12458352 12458380 -73237374 + AT_rich Low_complexity Low_complexity 1 28 0 1558 93 0 21 chr15 12458846 12459083 -73236671 + L1PA7 LINE L1 5920 6151 -3 5073 186 56 7 chr15 12459471 12460620 -73235134 + L1MD2 LINE L1 5142 6346 -13 341 379 28 0 chr15 12461064 12461209 -73234545 - LTR16A LTR ERVL -293 157 9 5293 72 62 8 chr15 12462542 12463302 -73232452 - L1PA13 LINE L1 -1 6162 5362 1294 173 27 96 chr15 12463302 12463603 -73232151 - AluJo SINE Alu -32 280 1 340 312 0 55 chr15 12463684 12463793 -73231961 + MIR SINE MIR 88 190 -72 1298 168 110 0 chr15 12464018 12464309 -73231445 + MER33 DNA MER1_type 1 323 -1 1034 171 0 0 chr15 12466592 12466756 -73228998 + AluSg/x SINE Alu 132 295 -15 1277 138 0 5 chr15 12467072 12467275 -73228479 - AluSx SINE Alu -7 305 104 672 125 0 0 chr15 12467364 12467460 -73228294 - AluSx SINE Alu -216 96 1 517 264 0 0 chr15 12467557 12467667 -73228087 - MIR SINE MIR -107 155 46 256 228 196 11 chr15 12468455 12468547 -73227207 + L2 LINE L2 3160 3268 -4 228 170 43 0 chr15 12470303 12470350 -73225404 + GA-rich Low_complexity Low_complexity 2 50 0 962 323 48 36 chr15 12471101 12471682 -73224072 - L2 LINE L2 -19 3294 2716 458 333 29 6 chr15 12472005 12472179 -73223575 + MIR SINE MIR 26 203 -59 223 297 0 16 chr15 12473575 12473639 -73222115 + GA-rich Low_complexity Low_complexity 4 66 0 285 308 130 16 chr15 12474784 12474969 -73220785 - L2 LINE L2 0 3313 3108 193 358 62 19 chr15 12475212 12475374 -73220380 + L2 LINE L2 2888 3056 -257 613 296 36 5 chr15 12475683 12475879 -73219875 - LTR16C LTR ERVL -52 439 238 1773 176 6 6 chr15 12477188 12477500 -73218254 + AluJo SINE Alu 1 312 0 986 246 40 12 chr15 12478020 12478272 -73217482 - L1ME1 LINE L1 -24 6142 5884 2029 139 3 3 chr15 12482188 12482533 -73213221 + AluSx SINE Alu 1 345 0 18192 168 18 5 chr15 12482634 12487067 -73208687 + L1PA13 LINE L1 1678 6162 -1 630 241 136 4 chr15 12487191 12487419 -73208335 + MER112 DNA MER1_type 1 258 -2 3739 233 37 11 chr15 12487930 12488205 -73207549 + L1P LINE L1 2168 2435 -3711 180 111 0 0 chr15 12488205 12488232 -73207522 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3739 233 37 11 chr15 12488232 12489000 -73206754 + L1P LINE L1 2435 3241 -2905 4191 125 31 12 chr15 12489000 12489682 -73206072 + L1PA15 LINE L1 5465 6159 -6 3739 233 37 11 chr15 12489682 12489704 -73206050 + L1P LINE L1 3241 3261 -2885 307 200 0 0 chr15 12490552 12490602 -73205152 - L2 LINE L2 -8 3264 3215 281 233 68 0 chr15 12490744 12490817 -73204937 + MLT1J LTR MaLR 107 184 -327 555 245 13 22 chr15 12490891 12491084 -73204670 + MLT1J2 LTR MaLR 265 409 0 366 314 59 8 chr15 12491149 12491267 -73204487 + L2 LINE L2 3190 3313 0 320 339 15 8 chr15 12492366 12492496 -73203258 - MIR3 SINE MIR -69 139 9 207 0 0 0 chr15 12493419 12493442 -73202312 + (T)n Simple_repeat Simple_repeat 1 23 0 529 372 60 0 chr15 12493592 12493944 -73201810 - L2 LINE L2 -214 3099 2728 261 240 10 87 chr15 12494132 12494195 -73201559 - MER94 DNA DNA 0 134 80 2082 130 3 0 chr15 12494195 12494488 -73201266 - AluSc SINE Alu -15 294 1 261 240 10 87 chr15 12494488 12494528 -73201226 - MER94 DNA DNA -54 80 39 249 330 33 0 chr15 12495294 12495385 -73200369 + L2 LINE L2 2929 3022 -250 339 276 122 18 chr15 12496499 12496622 -73199132 + MIR SINE MIR 5 141 -67 502 237 25 97 chr15 12496639 12496917 -73198837 - MER102b DNA MER1_type 0 341 84 250 250 0 0 chr15 12496992 12497044 -73198710 + MIR3 SINE MIR 151 202 -6 2718 86 54 87 chr15 12498728 12498753 -73197001 + SVA Other Other 393 868 -520 2718 80 38 90 chr15 12498753 12499255 -73196499 + SVA Other Other 393 868 -518 24 67 0 0 chr15 12499929 12499974 -73195780 + GC_rich Low_complexity Low_complexity 1 45 0 6457 55 3 38 chr15 12500082 12500955 -73194799 + SVA Other Other 544 1386 0 412 304 82 18 chr15 12501698 12501918 -73193836 - MLT1L LTR MaLR -1 614 381 204 335 220 23 chr15 12502272 12502445 -73193309 + L3b LINE CR1 1372 1578 -5 569 333 49 12 chr15 12503083 12503326 -73192428 - LTR16A LTR ERVL -107 343 92 381 43 0 0 chr15 12503782 12503829 -73191925 + (TTC)n Simple_repeat Simple_repeat 1 47 0 751 263 0 0 chr15 12503835 12503987 -73191767 - FRAM SINE Alu -14 152 1 759 331 43 17 chr15 12504202 12504549 -73191205 - LTR16A LTR ERVL 0 450 95 252 246 72 94 chr15 12504868 12505006 -73190748 + MIR SINE MIR 59 193 -69 187 289 16 117 chr15 12505632 12505760 -73189994 - L2 LINE L2 -10 3262 3148 233 143 0 20 chr15 12505958 12506007 -73189747 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 214 255 0 0 chr15 12507150 12507197 -73188557 - L2 LINE L2 -9 3304 3258 652 254 135 0 chr15 12507601 12507794 -73187960 - MER20 DNA MER1_type 0 219 1 344 342 116 7 chr15 12507842 12508117 -73187637 + L2 LINE L2 2470 2774 -540 2259 118 0 0 chr15 12509563 12509867 -73185887 - AluSx SINE Alu -8 304 1 210 246 31 31 chr15 12510807 12510872 -73184882 - MIR SINE MIR -85 177 113 384 247 78 22 chr15 12512805 12513066 -73182688 - L1MEd LINE L1 -863 1627 1429 518 273 48 78 chr15 12513111 12513144 -73182610 - L1MEd LINE L1 -4926 1193 1161 2182 131 81 2 chr15 12513144 12513541 -73182213 - MSTA LTR MaLR 0 428 1 518 273 48 78 chr15 12513541 12513946 -73181808 - L1MEd LINE L1 -4958 1161 789 282 150 117 0 chr15 12513964 12514024 -73181730 - LTR16C LTR ERVL -20 471 405 346 270 157 64 chr15 12514026 12514230 -73181524 - LTR16C LTR ERVL -199 292 70 246 136 0 0 chr15 12514385 12514429 -73181325 + (TG)n Simple_repeat Simple_repeat 2 45 0 417 304 43 32 chr15 12514905 12515185 -73180569 - L1MEd LINE L1 -5825 294 12 334 288 108 36 chr15 12515301 12515440 -73180314 + MIR3 SINE MIR 33 181 -27 557 252 26 13 chr15 12516094 12516245 -73179509 + L2 LINE L2 3159 3311 -2 2030 139 14 0 chr15 12516525 12516819 -73178935 + AluSq SINE Alu 1 298 -15 444 272 65 50 chr15 12517225 12517504 -73178250 - L1ME1 LINE L1 -6 6160 5878 229 283 0 0 chr15 12517609 12517662 -73178092 + MIR SINE MIR 83 135 -73 200 239 209 0 chr15 12518643 12518710 -73177044 + L2 LINE L2 3232 3312 -1 663 302 87 36 chr15 12519377 12519850 -73175904 - L1M4 LINE L1 -3346 2800 2304 812 279 100 54 chr15 12519856 12520376 -73175378 + MLT1H LTR MaLR 1 544 -5 1009 134 38 0 chr15 12520532 12520689 -73175065 + L1PA16 LINE L1 6002 6164 -2 21 0 0 0 chr15 12520701 12520722 -73175032 + AT_rich Low_complexity Low_complexity 1 21 0 3923 90 75 17 chr15 12521470 12522070 -73173684 - MER41B LTR ERV1 0 635 1 578 309 75 0 chr15 12522098 12522286 -73173468 + MIR SINE MIR 50 251 -11 342 274 30 32 chr15 12522751 12522877 -73172877 + MIR3 SINE MIR 56 183 -25 627 202 0 0 chr15 12523380 12523489 -73172265 - FLAM_C SINE Alu -34 109 1 2679 96 13 0 chr15 12531302 12531688 -73164066 - L1PA13 LINE L1 -2 6161 5771 501 60 0 0 chr15 12531690 12531757 -73163997 - L1PA15 LINE L1 -328 5837 5771 400 108 54 0 chr15 12531759 12531833 -73163921 - L1PA10 LINE L1 -331 5837 5760 229 295 152 0 chr15 12532388 12532493 -73163261 + MIR SINE MIR 56 176 -86 717 330 130 17 chr15 12535741 12536095 -73159659 + L2 LINE L2 2445 2838 -476 391 316 101 34 chr15 12536103 12536340 -73159414 - L2 LINE L2 -20 3252 3000 592 313 97 8 chr15 12536379 12536638 -73159116 - L2 LINE L2 -561 2753 2472 230 236 0 18 chr15 12536758 12536813 -73158941 + L2 LINE L2 2920 2973 -340 1324 165 38 12 chr15 12536816 12537287 -73158467 - LTR9B LTR ERV1 0 644 107 2408 142 10 5 chr15 12537853 12538241 -73157513 + MLT1B LTR MaLR 1 390 0 522 115 0 0 chr15 12538380 12538458 -73157296 - MER116 DNA Mariner -2 78 1 490 279 143 7 chr15 12538756 12538910 -73156844 + MER5A DNA MER1_type 13 187 -2 323 297 148 70 chr15 12538943 12539172 -73156582 - L1MC/D LINE L1 -2236 5572 5326 294 29 0 0 chr15 12539597 12539632 -73156122 + (CA)n Simple_repeat Simple_repeat 1 35 0 2776 159 6 10 chr15 12542117 12542640 -73153114 - L1MB7 LINE L1 -20 6164 5644 357 189 9 90 chr15 12542747 12542858 -73152896 - L1MB7 LINE L1 -518 5662 5561 21 0 0 0 chr15 12543215 12543236 -73152518 + AT_rich Low_complexity Low_complexity 1 21 0 2387 71 0 3 chr15 12544391 12544687 -73151067 + AluY SINE Alu 1 295 -16 611 197 35 76 chr15 12546278 12546391 -73149363 - Tigger6a DNA MER2_type -514 1083 979 2227 46 7 4 chr15 12546391 12546700 -73149054 - AluY SINE Alu 0 310 1 611 197 35 76 chr15 12546700 12546783 -73148971 - Tigger6a DNA MER2_type -618 979 894 2006 225 36 0 chr15 12547282 12547753 -73148001 - Tigger6a DNA MER2_type -593 490 3 2614 174 44 23 chr15 12547837 12548410 -73147344 - L1MB5 LINE L1 -9 6165 5581 1935 254 76 50 chr15 12548410 12549459 -73146295 - L1ME LINE L1 -479 5691 4670 186 43 0 0 chr15 12549459 12549482 -73146272 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1935 254 76 50 chr15 12549482 12549552 -73146202 - L1ME LINE L1 -1500 4670 4603 1442 209 47 14 chr15 12549552 12549848 -73145906 + AluJo SINE Alu 1 306 -6 1935 254 76 50 chr15 12549848 12550313 -73145441 - L1ME LINE L1 -1567 4603 4058 2361 59 10 13 chr15 12550377 12550723 -73145031 - AluY SINE Alu 0 345 1 2005 144 39 33 chr15 12550766 12551128 -73144626 - THE1B LTR MaLR 0 364 1 355 345 102 29 chr15 12551660 12551906 -73143848 - L2 LINE L2 -459 2855 2592 1773 98 4 15 chr15 12554641 12554915 -73140839 - L1MA2 LINE L1 -8 6296 6026 315 261 85 31 chr15 12556800 12556930 -73138824 + L2 LINE L2 3136 3272 0 556 256 20 50 chr15 12557100 12557297 -73138457 + MIR SINE MIR 61 251 -11 581 219 0 7 chr15 12560439 12560590 -73135164 + CT-rich Low_complexity Low_complexity 3 152 0 261 180 0 0 chr15 12561417 12561467 -73134287 + T-rich Low_complexity Low_complexity 1 50 0 206 280 30 76 chr15 12562744 12562876 -73132878 + L2 LINE L2 2938 3063 -209 785 148 74 34 chr15 12565340 12565489 -73130265 + FAM SINE Alu 12 166 -19 478 291 127 19 chr15 12565884 12566097 -73129657 + MIR SINE MIR 25 260 -2 297 109 0 0 chr15 12566304 12566350 -73129404 + (TG)n Simple_repeat Simple_repeat 1 46 0 199 301 215 11 chr15 12566960 12567053 -73128701 - MIR SINE MIR -63 145 34 * 557 268 112 34 chr15 12567035 12567240 -73128514 + MIR SINE MIR 40 260 -2 414 226 17 17 chr15 12567254 12567369 -73128385 + MIR SINE MIR 148 262 0 30 0 0 0 chr15 12567519 12567549 -73128205 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 12569737 12569766 -73125988 + AT_rich Low_complexity Low_complexity 1 29 0 2056 123 3 0 chr15 12572031 12572315 -73123439 - AluSx SINE Alu -27 285 1 2332 63 10 3 chr15 12572853 12573153 -73122601 + AluY SINE Alu 1 302 -9 185 262 36 60 chr15 12573474 12573558 -73122196 + MIR SINE MIR 181 262 0 267 31 0 0 chr15 12573607 12573639 -73122115 + (TATAG)n Simple_repeat Simple_repeat 2 33 0 2408 70 3 0 chr15 12573723 12574024 -73121730 - AluY SINE Alu -7 304 3 510 239 51 124 chr15 12578625 12578859 -73116895 + MIR SINE MIR 20 236 -26 1873 169 10 0 chr15 12580511 12580818 -73114936 - AluSx SINE Alu -2 310 1 257 242 45 0 chr15 12581247 12581313 -73114441 - MIR SINE MIR -63 145 77 243 146 0 0 chr15 12581589 12581630 -73114124 + (TA)n Simple_repeat Simple_repeat 1 41 0 301 207 0 0 chr15 12581630 12581688 -73114066 - L1MC4 LINE L1 -1339 6703 6646 222 337 238 10 chr15 12584430 12584623 -73111131 - L3 LINE CR1 -12 1565 1329 295 328 23 8 chr15 12584980 12585111 -73110643 - L2 LINE L2 -630 2684 2552 267 335 116 19 chr15 12585132 12585287 -73110467 + MIR3 SINE MIR 18 187 -21 310 328 116 20 chr15 12585699 12585897 -73109857 - MIR SINE MIR -20 242 26 392 195 58 0 chr15 12586208 12586295 -73109459 - MIR SINE MIR -1 261 170 638 192 93 7 chr15 12586932 12587083 -73108671 + MLT1A1 LTR MaLR 1 164 -201 2165 133 3 3 chr15 12587407 12587716 -73108038 + AluSx SINE Alu 2 310 -2 207 162 0 0 chr15 12587752 12587789 -73107965 + CT-rich Low_complexity Low_complexity 4 40 0 6712 70 5 1 chr15 12587932 12589634 -73106120 - L1PA8 LINE L1 -13 6159 4445 204 258 106 15 chr15 12590803 12590869 -73104885 + MIR SINE MIR 19 90 -118 273 311 54 34 chr15 12590879 12591027 -73104727 - MIR3 SINE MIR -48 160 10 274 288 54 63 chr15 12591031 12591142 -73104612 - L3b LINE CR1 -199 1384 1275 349 274 35 18 chr15 12593651 12593764 -73101990 - MLT1I LTR MaLR -51 358 244 421 217 47 23 chr15 12593784 12593913 -73101841 - MLT1I LTR MaLR -269 140 9 252 288 79 65 chr15 12594139 12594278 -73101476 - MIR SINE MIR -70 192 52 197 263 188 0 chr15 12596861 12596941 -73098813 - MIR3 SINE MIR -7 201 107 494 277 15 31 chr15 12597900 12598030 -73097724 - L2 LINE L2 0 3313 3186 825 232 39 54 chr15 12649874 12650210 -73045544 + Charlie1 DNA MER1_type 215 545 -2216 1297 151 121 4 chr15 12650226 12650498 -73045256 + L1MA9 LINE L1 6007 6310 -2 2415 296 138 50 chr15 12650511 12652208 -73043546 + Charlie1 DNA MER1_type 555 2475 -286 690 304 66 12 chr15 12654641 12654884 -73040870 - MIR SINE MIR 0 262 7 22 35 0 0 chr15 12655490 12655519 -73040235 + AT_rich Low_complexity Low_complexity 1 29 0 315 240 94 82 chr15 12655538 12655709 -73040045 - MIR SINE MIR -1 261 89 2232 109 7 0 chr15 12655860 12656154 -73039600 - AluSc SINE Alu -12 297 2 392 225 101 3 chr15 12657279 12657450 -73038304 + MIR SINE MIR 4 248 -14 658 329 105 10 chr15 12657802 12658385 -73037369 - L2 LINE L2 0 3313 2648 267 278 61 35 chr15 12658479 12658594 -73037160 - MLT1K LTR MaLR -93 495 378 390 222 37 12 chr15 12658946 12659027 -73036727 - L2 LINE L2 -39 3274 3192 1050 263 70 10 chr15 12660140 12660417 -73035337 + LTR41 LTR ERVL 1 296 -477 340 210 222 0 chr15 12660417 12660498 -73035256 + MER45 DNA AcHobo 1 99 -941 227 31 31 0 chr15 12660931 12660963 -73034791 + (TAG)n Simple_repeat Simple_repeat 1 33 0 21 71 0 0 chr15 12661746 12661788 -73033966 + AT_rich Low_complexity Low_complexity 1 42 0 399 327 15 40 chr15 12661974 12662173 -73033581 - L1MEd LINE L1 -4906 1213 1020 235 148 16 16 chr15 12662810 12662871 -73032883 + CT-rich Low_complexity Low_complexity 2 62 0 306 125 0 0 chr15 12663351 12663399 -73032355 + (TG)n Simple_repeat Simple_repeat 1 48 0 193 370 0 0 chr15 12663487 12663560 -73032194 - L2 LINE L2 0 3272 3200 26 64 0 0 chr15 12664298 12664345 -73031409 + AT_rich Low_complexity Low_complexity 1 47 0 183 80 0 0 chr15 12664957 12664982 -73030772 + (T)n Simple_repeat Simple_repeat 1 25 0 206 277 0 0 chr15 12665096 12665143 -73030611 + (CA)n Simple_repeat Simple_repeat 2 48 0 427 160 43 11 chr15 12666560 12666654 -73029100 - MER103 DNA DNA -10 156 60 634 328 4 45 chr15 12666655 12666923 -73028831 + MIR SINE MIR 1 257 -5 762 11 0 0 chr15 12667937 12668024 -73027730 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1154 115 0 0 chr15 12668027 12668201 -73027553 + L1PA13 LINE L1 5875 6048 -115 186 267 160 0 chr15 12668592 12668667 -73027087 - L2 LINE L2 -214 3058 2972 1688 290 172 13 chr15 12668692 12669689 -73026065 + L2 LINE L2 2133 3267 -5 203 259 0 19 chr15 12669978 12670032 -73025722 + CT-rich Low_complexity Low_complexity 3 55 0 268 305 9 9 chr15 12670134 12670166 -73025588 + (TA)n Simple_repeat Simple_repeat 2 33 -73 1923 146 43 30 chr15 12670166 12670536 -73025218 + THE1C LTR MaLR 1 375 0 268 305 9 9 chr15 12670536 12670608 -73025146 + (TA)n Simple_repeat Simple_repeat 32 106 0 198 167 0 0 chr15 12671417 12671447 -73024307 - MER5A DNA MER1_type -159 30 1 2264 194 71 28 chr15 12673599 12674165 -73021589 - L1MD3 LINE L1 0 7995 7406 384 286 0 0 chr15 12674168 12674252 -73021502 - MLT1F1 LTR MaLR -449 118 35 723 222 56 0 chr15 12674252 12674450 -73021304 - L1MD3 LINE L1 -879 7116 6908 4830 114 12 5 chr15 12674450 12675211 -73020543 - L1MA4A LINE L1 -4 6299 5534 14507 199 27 12 chr15 12675211 12678716 -73017038 - L1 LINE L1 -870 5978 2496 1011 119 62 0 chr15 12678725 12678918 -73016836 - L1MA3 LINE L1 0 6305 6101 1879 116 14 7 chr15 12678918 12679212 -73016542 + L1MA3 LINE L1 5780 6075 -230 * 8275 168 16 12 chr15 12679208 12680646 -73015108 - L1 LINE L1 -4424 2425 983 2217 224 33 88 chr15 12680649 12681433 -73014321 - L1MD3 LINE L1 -1072 6923 6183 2609 243 95 56 chr15 12681515 12681619 -73014135 - L1MCc LINE L1 -3113 3828 3730 2091 128 3 0 chr15 12681619 12681907 -73013847 - AluSx SINE Alu -23 289 1 2609 243 95 56 chr15 12681907 12682872 -73012882 - L1MCc LINE L1 -3211 3730 2804 2213 46 21 25 chr15 12682872 12683186 -73012568 + AluY SINE Alu 1 313 0 2609 243 95 56 chr15 12683186 12683225 -73012529 - L1MCc LINE L1 -4137 2804 2768 2065 116 55 25 chr15 12683225 12683587 -73012167 + THE1C LTR MaLR 1 373 -2 2609 243 95 56 chr15 12683587 12683834 -73011920 - L1MCc LINE L1 -4173 2768 2532 2274 61 3 7 chr15 12683834 12684129 -73011625 + AluY SINE Alu 1 294 -17 2609 243 95 56 chr15 12684129 12685538 -73010216 - L1MCc LINE L1 -4409 2532 854 357 290 81 76 chr15 12685701 12686073 -73009681 - L1MCc LINE L1 -5624 798 429 1836 112 8 0 chr15 12686073 12686322 -73009432 - AluSx SINE Alu -5 307 57 1645 129 8 8 chr15 12686322 12686561 -73009193 - AluSc SINE Alu -68 241 1 357 290 81 76 chr15 12686561 12686648 -73009106 - L1MCc LINE L1 -5992 430 12 2036 110 28 8 chr15 12687973 12688329 -73007425 + L1MA8 LINE L1 5927 6289 -2 843 313 61 10 chr15 12688529 12688839 -73006915 + MLT1J2 LTR MaLR 3 328 -122 2059 122 0 17 chr15 12689182 12689650 -73006104 - AluSx SINE Alu 0 463 1 345 304 66 41 chr15 12690170 12690212 -73005542 - L1MEc LINE L1 -3783 2432 2393 1240 202 73 48 chr15 12690212 12690568 -73005186 - MLT1A1 LTR MaLR 0 365 1 345 304 66 41 chr15 12690568 12690815 -73004939 - L1MEc LINE L1 -3822 2393 2172 442 353 85 28 chr15 12691633 12692500 -73003254 + L1ME4a LINE L1 4372 5301 -845 1021 270 88 19 chr15 12692508 12693038 -73002716 + L1ME4a LINE L1 5332 5912 -209 1979 116 64 59 chr15 12693160 12693548 -73002206 - MLT1B LTR MaLR 0 390 1 2107 88 49 26 chr15 12693638 12693944 -73001810 - AluSp SINE Alu 0 313 1 23 0 0 0 chr15 12694162 12694185 -73001569 + AT_rich Low_complexity Low_complexity 1 23 0 243 157 0 0 chr15 12695971 12696022 -72999732 + GA-rich Low_complexity Low_complexity 2 52 0 371 311 108 0 chr15 12696622 12696789 -72998965 - MIR SINE MIR -39 223 39 21 0 0 0 chr15 12698062 12698083 -72997671 + AT_rich Low_complexity Low_complexity 1 21 0 1760 191 43 3 chr15 12699572 12699923 -72995831 - MLT1A1 LTR MaLR 0 365 1 642 259 138 12 chr15 12701556 12701803 -72993951 - LTR16A1 LTR ERVL -12 445 168 698 188 7 0 chr15 12701994 12702138 -72993616 + L1P LINE L1 4319 4463 -1683 29 70 0 0 chr15 12702138 12702195 -72993559 + AT_rich Low_complexity Low_complexity 1 57 0 959 142 28 28 chr15 12704497 12704673 -72991081 + L1PB4 LINE L1 5979 6154 -2 208 151 19 38 chr15 12704992 12705045 -72990709 + (TA)n Simple_repeat Simple_repeat 1 52 0 199 328 0 0 chr15 12705860 12705921 -72989833 - MIR SINE MIR -139 123 63 33 90 0 0 chr15 12706170 12706259 -72989495 + AT_rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr15 12706587 12706607 -72989147 + (TG)n Simple_repeat Simple_repeat 1 20 0 1131 195 7 121 chr15 12706615 12706756 -72988998 - AluSp SINE Alu -41 272 183 507 33 0 0 chr15 12706756 12706817 -72988937 + (TG)n Simple_repeat Simple_repeat 2 62 0 1131 195 7 121 chr15 12706817 12706982 -72988772 - AluSp SINE Alu -130 183 1 2835 255 29 43 chr15 12706983 12707834 -72987920 + L2 LINE L2 1993 2831 -483 711 284 30 51 chr15 12707921 12708217 -72987537 + L2 LINE L2 3023 3312 -1 23 33 0 0 chr15 12709483 12709513 -72986241 + AT_rich Low_complexity Low_complexity 1 30 0 264 258 22 11 chr15 12711767 12711856 -72983898 + MLT1F1 LTR MaLR 36 125 -442 2144 199 72 34 chr15 12712042 12712594 -72983160 + L1MC3 LINE L1 7205 7777 -8 472 343 24 94 chr15 12713013 12713386 -72982368 + L2 LINE L2 2918 3264 -8 2774 166 21 52 chr15 12713659 12713880 -72981874 + L1PA16 LINE L1 5570 5796 -370 414 0 0 0 chr15 12713880 12713926 -72981828 + (TG)n Simple_repeat Simple_repeat 2 47 0 2774 166 21 52 chr15 12713926 12714317 -72981437 + L1PA16 LINE L1 5796 6163 -3 194 319 53 71 chr15 12714524 12714637 -72981117 + L3b LINE CR1 1468 1578 -5 2226 158 37 35 chr15 12717199 12717630 -72978124 - MSTB1 LTR MaLR 0 432 1 311 348 58 37 chr15 12717901 12718229 -72977525 + L2 LINE L2 2159 2493 -821 267 288 51 42 chr15 12718373 12718491 -72977263 + L3 LINE CR1 632 750 -827 330 329 147 53 chr15 12719042 12719416 -72976338 + L3 LINE CR1 772 1180 -397 2340 67 10 16 chr15 12719416 12719729 -72976025 + AluY SINE Alu 1 311 0 356 319 9 80 chr15 12719831 12720044 -72975710 - L3 LINE CR1 -410 1167 970 502 332 62 5 chr15 12720061 12720272 -72975482 + L3 LINE CR1 1280 1502 -75 225 200 17 50 chr15 12720389 12720449 -72975305 + Charlie8 DNA MER1_type 1360 1417 -1000 299 316 188 0 chr15 12721198 12721315 -72974439 + MIR3 SINE MIR 21 159 -49 1061 259 97 43 chr15 12722503 12722896 -72972858 + MLT1J2 LTR MaLR 32 445 -5 706 352 60 45 chr15 12723187 12723965 -72971789 - L2 LINE L2 0 3313 2527 507 247 39 39 chr15 12723965 12724119 -72971635 - L2 LINE L2 -985 2329 2176 354 237 17 42 chr15 12724593 12724711 -72971043 - L1ME3A LINE L1 0 6239 6125 333 269 46 19 chr15 12724784 12724892 -72970862 - L2 LINE L2 -2 3311 3201 212 211 58 0 chr15 12725056 12725108 -72970646 + L2 LINE L2 3218 3272 0 286 303 129 8 chr15 12727080 12727212 -72968542 + MIR SINE MIR 1 148 -114 33 25 0 0 chr15 12731481 12731521 -72964233 + AT_rich Low_complexity Low_complexity 1 40 0 261 291 0 0 chr15 12733119 12733174 -72962580 + L2 LINE L2 3247 3301 -12 356 122 49 12 chr15 12734203 12734285 -72961469 + L1MB7 LINE L1 6100 6184 0 249 351 0 11 chr15 12734423 12734517 -72961237 - MIR SINE MIR -81 127 35 442 272 133 45 chr15 12735227 12735558 -72960196 + L1ME4a LINE L1 4487 4846 -1300 1072 294 37 41 chr15 12735853 12736289 -72959465 - LTR16C LTR ERVL -23 468 35 581 208 12 24 chr15 12736914 12737082 -72958672 - MER96B DNA MER1_type? -237 180 15 22 0 0 0 chr15 12737251 12737273 -72958481 + AT_rich Low_complexity Low_complexity 1 22 0 439 258 85 50 chr15 12737433 12737716 -72958038 + L1ME4a LINE L1 5550 5842 -279 283 256 0 0 chr15 12741898 12741976 -72953778 + T-rich Low_complexity Low_complexity 1 78 0 393 306 50 33 chr15 12742419 12742540 -72953214 - L2 LINE L2 0 3272 3150 1541 170 10 35 chr15 12742573 12742861 -72952893 - AluJo SINE Alu -31 281 1 231 217 0 0 chr15 12743970 12744030 -72951724 + (TA)n Simple_repeat Simple_repeat 1 60 0 201 213 0 21 chr15 12744517 12744564 -72951190 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr15 12746649 12746680 -72949074 + AT_rich Low_complexity Low_complexity 1 31 0 256 200 17 17 chr15 12746888 12746948 -72948806 - L1ME3A LINE L1 -224 6015 5956 2214 170 26 20 chr15 12747031 12747484 -72948270 - L1MC1 LINE L1 -6 6327 5872 3396 156 69 18 chr15 12747584 12748542 -72947212 - L1MC1 LINE L1 -475 5858 4847 304 250 40 40 chr15 12748545 12748781 -72946973 - L1ME3A LINE L1 -729 5506 5228 1268 269 121 26 chr15 12748865 12750234 -72945520 - L1MEc LINE L1 -2814 3401 1941 531 266 126 23 chr15 12750582 12750845 -72944909 - LTR16A1 LTR ERVL 0 457 168 408 167 191 24 chr15 12751016 12751142 -72944612 + Charlie4 DNA MER1_type 20 166 -1795 210 71 0 0 chr15 12751876 12751904 -72943850 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr15 12752480 12752506 -72943248 + AT_rich Low_complexity Low_complexity 1 26 0 182 312 110 18 chr15 12753368 12753477 -72942277 + MIR SINE MIR 142 260 -2 526 309 62 0 chr15 12753956 12754118 -72941636 - MER63A DNA MER1_type -4 206 35 371 277 20 0 chr15 12754815 12754916 -72940838 - MIR SINE MIR -3 259 157 2208 87 3 10 chr15 12754916 12755225 -72940529 + MER41A LTR ERV1 248 554 0 1392 94 25 0 chr15 12755225 12755427 -72940327 - HSMAR2 DNA Mariner -1095 207 1 308 262 96 3 chr15 12756313 12756442 -72939312 - MIR SINE MIR -64 144 21 273 57 0 0 chr15 12757507 12757542 -72938212 + (T)n Simple_repeat Simple_repeat 1 35 0 2241 78 4 0 chr15 12759699 12760003 -72935751 - AluY SINE Alu 0 305 1 560 238 131 19 chr15 12762316 12762476 -72933278 + MER45A DNA AcHobo 1 178 0 2045 125 3 7 chr15 12762698 12763002 -72932752 + AluSx SINE Alu 1 303 -9 909 298 66 46 chr15 12764403 12764954 -72930800 + L2 LINE L2 2503 3054 -259 6935 77 7 1 chr15 12764985 12766362 -72929392 - L1PA7 LINE L1 -26 6128 4744 * 7999 78 11 3 chr15 12766353 12767439 -72928315 + L1PA7 LINE L1 3641 4735 -1411 655 264 239 27 chr15 12767489 12767928 -72927826 + MLT1H LTR MaLR 2 533 -16 208 250 68 45 chr15 12768548 12768636 -72927118 - L2 LINE L2 0 3313 3224 188 312 101 28 chr15 12770242 12770351 -72925403 + L2 LINE L2 3146 3262 -10 1960 111 116 14 chr15 12770518 12770871 -72924883 - L1MA4A LINE L1 -6 6297 5909 387 262 16 71 chr15 12772010 12772136 -72923618 - L2 LINE L2 -5 3308 3190 340 164 82 91 chr15 12772204 12772314 -72923440 - MER53 DNA DNA 0 189 81 504 284 54 86 chr15 12772708 12772930 -72922824 + MIR SINE MIR 8 222 -40 2062 137 0 3 chr15 12773668 12773968 -72921786 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr15 12774721 12774743 -72921011 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 636 14 0 0 chr15 12774747 12774820 -72920934 - L1PA5 LINE L1 -9 6145 6073 450 0 0 0 chr15 12775116 12775166 -72920588 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 338 0 12 chr15 12775416 12775496 -72920258 - MIR SINE MIR -132 130 52 23 0 0 0 chr15 12776371 12776394 -72919360 + AT_rich Low_complexity Low_complexity 1 23 0 210 314 99 33 chr15 12776863 12776984 -72918770 - L2 LINE L2 -5 3267 3139 2203 102 0 3 chr15 12777300 12777615 -72918139 + AluSq SINE Alu 1 314 0 190 0 0 0 chr15 12777594 12777642 -72918112 + (CAA)n Simple_repeat Simple_repeat 1 48 0 330 180 0 0 chr15 12778597 12778658 -72917096 + L1ME LINE L1 5626 5686 -480 1054 204 82 4 chr15 12778667 12778947 -72916807 - L1ME LINE L1 -581 5585 5284 832 228 129 0 chr15 12778944 12779146 -72916608 - L1MC/D LINE L1 -2042 6161 5934 * 2168 250 82 6 chr15 12779140 12779919 -72915835 - L1MC/D LINE L1 -1534 5030 4193 14289 140 20 22 chr15 12779951 12780906 -72914848 - Tigger1 DNA MER2_type -13 2405 1449 782 181 0 8 chr15 12780906 12781039 -72914715 - FLAM_C SINE Alu -1 132 1 14289 140 20 22 chr15 12781039 12782493 -72913261 - Tigger1 DNA MER2_type -969 1449 1 3894 222 79 35 chr15 12782536 12784234 -72911520 - L1MEc LINE L1 -2422 4142 2411 1349 298 63 20 chr15 12784294 12784824 -72910930 + L2 LINE L2 2765 3312 -1 7160 179 72 21 chr15 12786639 12786745 -72909009 - L1MC3 LINE L1 0 7785 7686 1798 178 0 3 chr15 12786745 12787031 -72908723 + AluJb SINE Alu 1 285 -27 7160 179 72 21 chr15 12787031 12787777 -72907977 - L1MC3 LINE L1 -99 7686 6979 351 0 0 0 chr15 12787777 12787816 -72907938 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chr15 12787815 12787839 -72907915 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 7160 179 72 21 chr15 12787816 12788575 -72907179 - L1MC3 LINE L1 -806 6979 6115 1173 242 51 23 chr15 12788570 12788921 -72906833 - L1MEc LINE L1 -5116 929 569 * 2358 126 22 3 chr15 12789005 12789361 -72906393 + THE1B LTR MaLR 1 363 -1 293 177 32 0 chr15 12789523 12789585 -72906169 - L1MEc LINE L1 -5086 959 896 1437 264 16 46 chr15 12789591 12790087 -72905667 - L1MEc LINE L1 -5562 483 3 235 301 0 0 chr15 12790123 12790196 -72905558 - MIR SINE MIR -66 196 124 2417 63 3 0 chr15 12790429 12790730 -72905024 + AluY SINE Alu 1 302 -9 356 277 136 35 chr15 12792232 12792437 -72903317 + MIR SINE MIR 32 256 -6 2367 82 3 0 chr15 12793241 12793545 -72902209 - AluY SINE Alu -6 305 1 1171 208 17 97 chr15 12794031 12794392 -72901362 + L1ME1 LINE L1 5501 5832 -334 2228 96 10 13 chr15 12794467 12794779 -72900975 - AluSq SINE Alu -2 311 1 2060 112 39 3 chr15 12795990 12796295 -72899459 - MER7A DNA MER2_type 0 346 33 352 299 84 43 chr15 12796367 12796697 -72899057 - L1ME3A LINE L1 -233 5937 5587 916 265 110 60 chr15 12796697 12797180 -72898574 + MLT1J LTR MaLR 5 511 0 352 299 84 43 chr15 12797180 12797243 -72898511 - L1ME3A LINE L1 -583 5587 5528 197 301 27 0 chr15 12797343 12797416 -72898338 - MIR SINE MIR -62 146 72 340 315 107 0 chr15 12798944 12799093 -72896661 + MIR3 SINE MIR 35 199 -9 244 245 0 0 chr15 12799195 12799248 -72896506 + MLT1I LTR MaLR 72 124 -285 529 186 34 8 chr15 12799423 12799541 -72896213 + L1PA8A LINE L1 6011 6131 0 287 323 0 0 chr15 12800105 12800170 -72895584 - L2 LINE L2 0 3272 3208 365 331 37 7 chr15 12800708 12800844 -72894910 - MIR SINE MIR -121 141 2 2498 191 15 21 chr15 12801019 12801491 -72894263 + MER70A LTR ERVL 4 472 0 21 36 0 0 chr15 12801575 12801603 -72894151 + AT_rich Low_complexity Low_complexity 1 28 0 213 196 0 0 chr15 12801721 12801772 -72893982 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 271 309 201 7 chr15 12803719 12803868 -72891886 - MIR SINE MIR -50 212 35 409 346 67 8 chr15 12804121 12804375 -72891379 + L2 LINE L2 2811 3079 -193 181 365 81 14 chr15 12804413 12804487 -72891267 + L2 LINE L2 3157 3235 -37 2791 146 38 23 chr15 12804576 12805097 -72890657 + L1MB2 LINE L1 5624 6152 -19 1754 159 107 6 chr15 12805098 12805463 -72890291 + L1MA4 LINE L1 5893 6294 -6 1738 53 0 0 chr15 12805877 12806084 -72889670 + AluY SINE Alu 100 306 -5 471 374 20 5 chr15 12806143 12806346 -72889408 - MIR SINE MIR -54 208 3 225 384 66 5 chr15 12806419 12806617 -72889137 + L3b LINE CR1 1243 1452 -131 21 0 0 0 chr15 12806791 12806812 -72888942 + AT_rich Low_complexity Low_complexity 1 21 0 209 179 0 0 chr15 12808371 12808410 -72887344 + (CATA)n Simple_repeat Simple_repeat 1 39 0 432 274 116 7 chr15 12809583 12809729 -72886025 - MIR SINE MIR -53 209 48 509 253 205 9 chr15 12811549 12811778 -72883976 - LTR33A LTR ERVL -16 507 234 880 301 118 22 chr15 12812235 12812737 -72883017 - MLT1L LTR MaLR 0 615 66 1410 215 0 4 chr15 12812890 12813164 -72882590 + AluJo SINE Alu 1 273 -39 312 48 0 0 chr15 12813177 12813219 -72882535 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 252 274 14 14 chr15 12813219 12813292 -72882462 - MIR SINE MIR -172 90 18 189 274 20 0 chr15 12813387 12813438 -72882316 + L2 LINE L2 3220 3271 -1 230 348 113 17 chr15 12814554 12814669 -72881085 - MIR3 SINE MIR -38 170 45 599 301 99 41 chr15 12814846 12815415 -72880339 + MLT1F LTR MaLR 1 595 0 24 32 0 0 chr15 12816201 12816232 -72879522 + AT_rich Low_complexity Low_complexity 1 31 0 237 108 0 0 chr15 12818790 12818827 -72876927 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 228 409 18 18 chr15 12818827 12818991 -72876763 - L2 LINE L2 -7 3265 3102 1532 237 22 14 chr15 12819038 12819409 -72876345 - MLT1A2 LTR MaLR 0 374 1 2698 276 89 71 chr15 12819854 12820736 -72875018 - L2 LINE L2 -36 3277 2368 1598 95 25 8 chr15 12820736 12820978 -72874776 + L1PB2 LINE L1 5906 6151 0 2698 276 89 71 chr15 12820978 12821769 -72873985 - L2 LINE L2 -945 2368 1593 296 239 30 22 chr15 12821895 12822029 -72873725 + (TA)n Simple_repeat Simple_repeat 2 136 0 22 0 0 0 chr15 12823441 12823463 -72872291 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 12823588 12823614 -72872140 + AT_rich Low_complexity Low_complexity 1 26 0 233 246 18 0 chr15 12823720 12823777 -72871977 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 323 345 67 67 chr15 12824375 12824613 -72871141 - MIR SINE MIR -5 257 20 1236 238 47 74 chr15 12824651 12825122 -72870632 - L1MD3 LINE L1 -24 7971 7514 345 100 0 0 chr15 12825348 12825398 -72870356 + (TG)n Simple_repeat Simple_repeat 1 50 0 961 196 30 15 chr15 12825406 12825605 -72870149 + MER63A DNA MER1_type 9 210 0 2486 47 0 3 chr15 12825900 12826197 -72869557 + AluY SINE Alu 1 296 -15 1703 218 126 18 chr15 12826767 12827221 -72868533 + MLT1D LTR MaLR 2 504 -1 772 196 0 0 chr15 12827559 12827692 -72868062 + AluJ SINE Alu 1 133 -169 944 200 0 6 chr15 12827750 12827915 -72867839 + AluJ SINE Alu 121 284 -28 194 274 217 28 chr15 12828358 12828464 -72867290 + MIR SINE MIR 17 142 -66 22 0 0 0 chr15 12828497 12828519 -72867235 + AT_rich Low_complexity Low_complexity 1 22 0 391 230 36 97 chr15 12830128 12830293 -72865461 + MIR SINE MIR 52 206 -56 319 357 82 31 chr15 12830317 12830513 -72865241 + MIR SINE MIR 57 262 0 252 0 0 0 chr15 12831204 12831232 -72864522 + (CA)n Simple_repeat Simple_repeat 2 29 0 2102 108 0 4 chr15 12832981 12833259 -72862495 + AluSq SINE Alu 1 277 -36 325 289 39 16 chr15 12833544 12833672 -72862082 + MIR3 SINE MIR 78 208 0 261 385 106 15 chr15 12834056 12834386 -72861368 - L2 LINE L2 -26 3287 2928 502 258 0 8 chr15 12834484 12834616 -72861138 + MER94 DNA DNA 1 131 -3 650 352 112 31 chr15 12834648 12835256 -72860498 - L2 LINE L2 -577 2737 2081 357 248 23 15 chr15 12835348 12835481 -72860273 + LTR16C LTR ERVL 340 473 -18 266 305 153 28 chr15 12835482 12835659 -72860095 - L2 LINE L2 -1238 2076 1878 2880 48 6 0 chr15 12835661 12836017 -72859737 - L1PA7 LINE L1 -267 5887 5530 1467 85 0 5 chr15 12836004 12836205 -72859549 + L1PA7 LINE L1 5880 6079 -75 * 1859 83 4 0 chr15 12836207 12836447 -72859307 + AluY SINE Alu 58 298 -13 183 204 0 0 chr15 12836448 12836492 -72859262 - L2 LINE L2 -1622 1692 1649 643 369 95 7 chr15 12836494 12837033 -72858721 - L2 LINE L2 -1915 1399 814 333 343 86 69 chr15 12837429 12837779 -72857975 + L2 LINE L2 2916 3271 -1 301 343 127 25 chr15 12839743 12839988 -72855766 + L2 LINE L2 530 799 -2515 1869 146 30 3 chr15 12840950 12841245 -72854509 - AluSx SINE Alu -9 303 1 330 319 143 50 chr15 12841275 12841840 -72853914 + L2 LINE L2 1606 2223 -1091 376 259 28 9 chr15 12842010 12842118 -72853636 - MIR SINE MIR -149 113 4 * 432 334 100 46 chr15 12842118 12842510 -72853244 + L2 LINE L2 2338 2776 -538 455 285 32 16 chr15 12842510 12842696 -72853058 + MER5A DNA MER1_type 1 189 0 432 334 100 46 chr15 12842696 12842909 -72852845 + L2 LINE L2 2776 2976 -338 294 350 35 7 chr15 12843413 12843556 -72852198 - MIR SINE MIR -75 187 41 423 0 0 0 chr15 12844173 12844220 -72851534 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr15 12845350 12845371 -72850383 + (A)n Simple_repeat Simple_repeat 1 21 0 310 314 107 13 chr15 12846955 12847114 -72848640 - MIR SINE MIR -87 175 2 780 296 76 58 chr15 12847412 12847845 -72847909 - MLT1L LTR MaLR -7 608 168 682 204 109 17 chr15 12848035 12848231 -72847523 - LTR41 LTR ERVL -551 244 2 228 316 25 13 chr15 12848696 12848775 -72846979 - L2 LINE L2 0 3272 3193 236 305 0 12 chr15 12849660 12849742 -72846012 + GA-rich Low_complexity Low_complexity 1 81 0 206 118 0 0 chr15 12850626 12850660 -72845094 + (TA)n Simple_repeat Simple_repeat 1 34 0 278 295 8 23 chr15 12850702 12850831 -72844923 + (TA)n Simple_repeat Simple_repeat 2 128 0 29 28 0 0 chr15 12851067 12851103 -72844651 + AT_rich Low_complexity Low_complexity 1 36 0 345 343 91 14 chr15 12852381 12852600 -72843154 + L3 LINE CR1 1186 1421 -156 201 147 0 0 chr15 12853916 12853950 -72841804 + (A)n Simple_repeat Simple_repeat 1 34 0 1659 216 8 35 chr15 12854622 12854997 -72840757 - MLT1A1 LTR MaLR 0 365 1 2145 106 0 0 chr15 12855493 12855775 -72839979 - AluY SINE Alu -10 301 20 324 259 92 87 chr15 12858090 12858275 -72837479 + MLT1H LTR MaLR 107 292 -257 2274 97 7 0 chr15 12859025 12859333 -72836421 + AluSg SINE Alu 1 310 0 2707 36 0 0 chr15 12859748 12860054 -72835700 - AluY SINE Alu -5 306 1 425 237 47 33 chr15 12861184 12861395 -72834359 - L1ME4a LINE L1 0 6121 5908 405 58 0 0 chr15 12862404 12862456 -72833298 + (TG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 12862942 12862964 -72832790 + AT_rich Low_complexity Low_complexity 1 22 0 505 252 37 106 chr15 12866150 12866396 -72829358 - MIR SINE MIR -20 242 14 21 36 0 0 chr15 12866479 12866507 -72829247 + AT_rich Low_complexity Low_complexity 1 28 0 222 233 0 0 chr15 12866579 12866622 -72829132 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 245 272 105 70 chr15 12866646 12866903 -72828851 - L1MC4 LINE L1 -122 7920 7655 375 289 118 54 chr15 12867199 12867403 -72828351 - MIR SINE MIR 0 262 46 363 330 165 0 chr15 12867523 12867705 -72828049 + L2 LINE L2 2557 2768 -546 326 255 21 0 chr15 12867712 12867806 -72827948 - MER5B DNA MER1_type -6 172 77 764 143 69 29 chr15 12867814 12867989 -72827765 - MER53 DNA DNA 0 189 8 297 213 16 0 chr15 12868022 12868083 -72827671 + MER5B DNA MER1_type 117 178 0 888 148 0 7 chr15 12868866 12869001 -72826753 + AluJo SINE Alu 1 134 -178 1836 193 30 30 chr15 12869132 12869248 -72826506 - MLT1A1 LTR MaLR 0 365 250 3362 144 34 0 chr15 12869248 12869784 -72825970 + MER41C LTR ERV1 1 554 0 1836 193 30 30 chr15 12869784 12870029 -72825725 - MLT1A1 LTR MaLR -114 251 4 322 378 64 23 chr15 12870550 12870722 -72825032 + L2 LINE L2 3085 3263 -9 2041 113 3 3 chr15 12870935 12871226 -72824528 + AluSx SINE Alu 1 291 -21 647 286 148 24 chr15 12873282 12873659 -72822095 + Charlie2b DNA MER1_type 2 425 -2437 429 290 21 14 chr15 12873672 12873817 -72821937 + Charlie2b DNA MER1_type 523 668 -2114 3054 223 72 92 chr15 12873923 12875334 -72820420 + Charlie2a DNA MER1_type 1469 2850 -12 790 262 22 56 chr15 12876035 12876302 -72819452 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 12878263 12878285 -72817469 + AT_rich Low_complexity Low_complexity 1 22 0 279 306 90 99 chr15 12880693 12881271 -72814483 + L2 LINE L2 1763 2335 -979 310 274 24 12 chr15 12881566 12881650 -72814104 - L2 LINE L2 0 3313 3229 352 208 76 69 chr15 12881669 12881813 -72813941 + MIR SINE MIR 118 262 0 243 325 46 46 chr15 12882145 12882296 -72813458 - MIR SINE MIR -92 170 20 25 90 0 0 chr15 12883255 12883322 -72812432 + AT_rich Low_complexity Low_complexity 1 67 0 629 174 61 38 chr15 12883640 12883772 -72811982 - AluJo SINE Alu -177 135 1 192 161 0 0 chr15 12885090 12885121 -72810633 + L3b LINE CR1 1334 1364 -219 709 279 73 20 chr15 12885316 12885563 -72810191 + MIR SINE MIR 2 261 -1 219 192 356 0 chr15 12886270 12886343 -72809411 - MIR SINE MIR -1 261 163 664 289 104 20 chr15 12886429 12886786 -72808968 + L2 LINE L2 2474 2860 -454 182 167 0 24 chr15 12887402 12887444 -72808310 + (CAT)n Simple_repeat Simple_repeat 2 42 0 336 283 272 16 chr15 12887445 12887629 -72808125 - MIR SINE MIR -1 261 31 868 123 0 48 chr15 12887718 12887864 -72807890 - MER1B DNA MER1_type -1 338 200 876 61 0 53 chr15 12887865 12887977 -72807777 + LTR10C LTR ERV1 1 107 -484 2180 114 3 0 chr15 12887977 12888275 -72807479 - AluSq SINE Alu -14 299 1 876 61 0 53 chr15 12888275 12888294 -72807460 + LTR10C LTR ERV1 107 125 -466 772 162 86 52 chr15 12890101 12890311 -72805443 - MER46A DNA MER2_type -19 217 1 * 833 148 67 13 chr15 12890176 12890325 -72805429 + MER46A DNA MER2_type 3 159 -77 253 304 59 20 chr15 12890329 12890431 -72805323 - MIR SINE MIR -108 154 49 251 327 50 20 chr15 12891808 12891909 -72803845 - L2 LINE L2 -3 3310 3207 439 310 95 0 chr15 12893438 12893596 -72802158 - MIR3 SINE MIR -12 196 24 334 333 76 20 chr15 12894476 12894674 -72801080 - MIR SINE MIR -13 249 41 1617 173 52 9 chr15 12894986 12895228 -72800526 + MER44D DNA MER2_type 1 231 -2260 1284 194 107 28 chr15 12895228 12895547 -72800207 - MER2 DNA MER2_type 0 344 1 1617 173 52 9 chr15 12895547 12895628 -72800126 + MER44D DNA MER2_type 231 608 -1 2106 150 28 3 chr15 12895669 12896023 -72799731 - MLT1A1 LTR MaLR -2 363 1 892 209 19 14 chr15 12896128 12896338 -72799416 - L1MD2 LINE L1 -2 6357 6147 5837 164 18 6 chr15 12896843 12898594 -72797160 - L1MA9 LINE L1 -2 6310 4538 5223 164 32 25 chr15 12898592 12899500 -72796254 + L1 LINE L1 3392 4311 -1835 * 2295 81 10 0 chr15 12899500 12899796 -72795958 + AluSp SINE Alu 1 299 -14 5223 164 32 25 chr15 12899796 12900005 -72795749 + L1 LINE L1 4311 4517 -1629 906 280 8 4 chr15 12900242 12900478 -72795276 + MIR SINE MIR 8 244 -18 322 39 39 0 chr15 12900709 12900761 -72794993 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 9953 24 8 0 chr15 12900761 12902706 -72793048 - L1PA2 LINE L1 -13 6142 4189 611 206 48 102 chr15 12902710 12903027 -72792727 + MLT2B1 LTR ERVL 156 520 0 427 290 142 0 chr15 12903059 12903221 -72792533 - MIR SINE MIR -75 187 3 268 361 45 7 chr15 12903269 12903424 -72792330 - L2 LINE L2 -1449 1865 1705 278 31 0 0 chr15 12904252 12904284 -72791470 + (T)n Simple_repeat Simple_repeat 1 32 0 275 300 80 21 chr15 12905407 12905539 -72790215 - MIR SINE MIR -63 145 18 2152 159 6 6 chr15 12907366 12907730 -72788024 + MER47A DNA MER2_type 3 366 0 737 195 65 50 chr15 12908640 12908840 -72786914 - MER3 DNA MER1_type 0 209 7 1922 92 0 46 chr15 12909008 12909290 -72786464 - AluSx SINE Alu -1 311 43 232 214 102 51 chr15 12911056 12911154 -72784600 + L2 LINE L2 3202 3304 -9 191 327 102 51 chr15 12911221 12911536 -72784218 + L2 LINE L2 2935 3265 -48 387 312 0 9 chr15 12912291 12912400 -72783354 + MIR SINE MIR 15 122 -140 26 30 0 0 chr15 12913209 12913242 -72782512 + AT_rich Low_complexity Low_complexity 1 33 0 339 25 0 0 chr15 12913335 12913375 -72782379 + (TG)n Simple_repeat Simple_repeat 1 40 0 263 328 10 26 chr15 12913524 12913716 -72782038 - L1ME3A LINE L1 -200 5970 5782 317 236 110 110 chr15 12913733 12913915 -72781839 - L1ME3A LINE L1 -485 5685 5504 2437 50 0 3 chr15 12914867 12915165 -72780589 - AluY SINE Alu -13 298 2 425 240 60 43 chr15 12915233 12915403 -72780351 + LTR33 LTR ERVL 6 214 -307 2182 77 0 4 chr15 12915523 12915818 -72779936 - AluSq SINE Alu 0 307 14 23 33 0 0 chr15 12915843 12915873 -72779881 + AT_rich Low_complexity Low_complexity 1 30 0 475 293 14 7 chr15 12915948 12916088 -72779666 + MIR SINE MIR 117 257 -5 301 311 233 16 chr15 12916291 12916484 -72779270 + MIR SINE MIR 28 262 0 21 0 0 0 chr15 12917389 12917410 -72778344 + AT_rich Low_complexity Low_complexity 1 21 0 231 283 138 31 chr15 12918287 12918446 -72777308 - MIR3 SINE MIR -17 191 16 2258 116 0 0 chr15 12919175 12919478 -72776276 + AluSx SINE Alu 1 303 -9 246 341 11 0 chr15 12919533 12919621 -72776133 + L1ME LINE L1 5550 5638 -483 2319 90 3 0 chr15 12919666 12919976 -72775778 + AluY SINE Alu 1 311 0 195 257 165 9 chr15 12920027 12920136 -72775618 + MIR SINE MIR 121 246 -16 1759 157 11 0 chr15 12920140 12920449 -72775305 - AluJo SINE Alu 0 312 1 245 276 65 70 chr15 12920495 12920709 -72775045 - L2 LINE L2 -338 2976 2764 * 314 231 130 9 chr15 12920690 12920798 -72774956 + L2 LINE L2 3141 3261 -52 429 153 46 84 chr15 12920798 12921056 -72774698 + MER33 DNA MER1_type 1 345 -18 248 204 0 0 chr15 12921081 12921125 -72774629 + L2 LINE L2 3229 3272 0 277 284 52 60 chr15 12922443 12922577 -72773177 - MIR SINE MIR -6 256 124 2231 230 59 1 chr15 12922776 12923461 -72772293 - L1MCc LINE L1 -3223 3718 3015 1283 175 130 39 chr15 12923528 12923859 -72771895 - MLT1A1 LTR MaLR -4 361 1 3387 238 99 4 chr15 12923859 12924617 -72771137 - MLT1A1-int LTR MaLR 0 1735 906 887 263 37 21 chr15 12924651 12925031 -72770723 - L1MCc LINE L1 -4123 2999 2614 29 78 0 0 chr15 12925136 12925200 -72770554 + AT_rich Low_complexity Low_complexity 1 64 0 1563 300 53 30 chr15 12925265 12926625 -72769129 - L1MCc LINE L1 -4576 2546 954 335 250 33 11 chr15 12926713 12926805 -72768949 - L1MCc LINE L1 -5949 474 381 1539 150 93 42 chr15 12926807 12927161 -72768593 + THE1C LTR MaLR 1 372 -3 1025 242 58 4 chr15 12927183 12927460 -72768294 - L1MDa LINE L1 -3355 3185 2894 * 1479 222 151 65 chr15 12927452 12927956 -72767798 - L1MDa LINE L1 -5698 842 296 222 118 0 0 chr15 12927956 12927990 -72767764 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1502 135 0 4 chr15 12928016 12928246 -72767508 + L1MC1 LINE L1 776 1004 -5422 * 10732 216 37 20 chr15 12928245 12931710 -72764044 + L1MC1 LINE L1 1708 5114 -1332 414 0 0 0 chr15 12931710 12931756 -72763998 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 10732 216 37 20 chr15 12931756 12932136 -72763618 + L1MC1 LINE L1 5114 5608 -838 2157 125 0 3 chr15 12932136 12932432 -72763322 + AluSx SINE Alu 3 297 -15 10732 216 37 20 chr15 12932432 12932458 -72763296 + L1MC1 LINE L1 5608 5632 -814 2838 87 0 5 chr15 12932462 12932840 -72762914 - MLT2A1 LTR ERVL -68 376 1 4417 151 9 67 chr15 12932840 12933739 -72762015 + L1MC1 LINE L1 5627 6473 -140 207 282 77 94 chr15 12934105 12934222 -72761532 + L2 LINE L2 3155 3269 -3 1705 181 83 17 chr15 12934310 12934670 -72761084 + MLT1B LTR MaLR 1 384 -6 3345 139 15 26 chr15 12936085 12936618 -72759136 - MER1A DNA MER1_type 0 527 1 191 244 90 39 chr15 12937297 12937375 -72758379 - L2 LINE L2 -82 3231 3150 288 0 0 0 chr15 12939115 12939147 -72756607 + (CA)n Simple_repeat Simple_repeat 2 33 0 2239 78 20 0 chr15 12939368 12939662 -72756092 + AluSg SINE Alu 1 300 -10 738 237 191 127 chr15 12940227 12941248 -72754506 + MER52A LTR ERV1 670 1755 0 1571 137 0 9 chr15 12941797 12942024 -72753730 + AluJb SINE Alu 64 288 -24 23 0 0 0 chr15 12942586 12942609 -72753145 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 12942735 12942756 -72752998 + AT_rich Low_complexity Low_complexity 1 21 0 2126 215 34 22 chr15 12943852 12944346 -72751408 - MLT1D LTR MaLR 0 505 6 207 243 14 40 chr15 12944448 12944522 -72751232 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 902 252 18 14 chr15 12944846 12945068 -72750686 + MER58A DNA MER1_type 2 224 0 531 322 96 57 chr15 12945208 12945665 -72750089 - MLT1L LTR MaLR -137 478 4 425 294 136 18 chr15 12945859 12946080 -72749674 + MIR SINE MIR 7 253 -9 270 305 153 0 chr15 12946506 12946624 -72749130 + L2 LINE L2 2511 2646 -668 2868 267 67 47 chr15 12946700 12948290 -72747464 + L1MEc LINE L1 22 1578 -4637 2736 103 0 26 chr15 12948290 12948719 -72747035 + L1MA3 LINE L1 5888 6305 0 2868 267 67 47 chr15 12948719 12949540 -72746214 + L1MEc LINE L1 1578 2381 -3834 2311 116 0 0 chr15 12949540 12949850 -72745904 - AluSx SINE Alu -2 310 1 2868 267 67 47 chr15 12949850 12951176 -72744578 + L1MEc LINE L1 2381 3750 -2465 1478 225 78 70 chr15 12951228 12952038 -72743716 + L1MEc LINE L1 4021 4836 -1379 722 251 106 71 chr15 12952248 12952682 -72743072 - L1MC5 LINE L1 -852 7109 6661 279 54 18 36 chr15 12952710 12952766 -72742988 + (TG)n Simple_repeat Simple_repeat 2 56 0 229 299 191 34 chr15 12953455 12953602 -72742152 - MIR SINE MIR 0 262 93 288 253 51 0 chr15 12953694 12953773 -72741981 - MIR SINE MIR -108 154 72 24 0 0 0 chr15 12954061 12954085 -72741669 + AT_rich Low_complexity Low_complexity 1 24 0 2010 122 0 4 chr15 12954128 12954440 -72741314 - AluSx SINE Alu 0 317 7 26 0 0 0 chr15 12954446 12954472 -72741282 + AT_rich Low_complexity Low_complexity 1 26 0 229 188 0 21 chr15 12957298 12957346 -72738408 - MLT1L LTR MaLR -536 79 33 981 304 19 4 chr15 12957683 12957940 -72737814 + MIR SINE MIR 2 262 0 541 338 49 52 chr15 12959304 12959467 -72736287 - L2 LINE L2 -12 3301 3139 1320 196 3 103 chr15 12959467 12959798 -72735956 + AluSx SINE Alu 2 299 -3 541 338 49 52 chr15 12959798 12960001 -72735753 - L2 LINE L2 -174 3139 2936 311 243 0 0 chr15 12960066 12960136 -72735618 - LTR33 LTR ERVL -62 459 390 1671 264 56 47 chr15 12960144 12960952 -72734802 + L1ME2 LINE L1 49 863 -5207 22 0 0 0 chr15 12960973 12960995 -72734759 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 12961030 12961059 -72734695 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr15 12961130 12961170 -72734584 + AT_rich Low_complexity Low_complexity 1 40 0 545 237 38 48 chr15 12961352 12961556 -72734198 - MLT1E1 LTR MaLR -350 304 51 874 279 28 0 chr15 12961708 12961995 -72733759 + L1ME2 LINE L1 2312 2606 -3474 * 2890 241 68 58 chr15 12961983 12962756 -72732998 + L1ME2 LINE L1 3982 4746 -1352 579 29 0 0 chr15 12962756 12962825 -72732929 + (TA)n Simple_repeat Simple_repeat 1 69 0 2890 241 68 58 chr15 12962825 12963097 -72732657 + L1ME2 LINE L1 4746 5014 -1084 2055 113 3 56 chr15 12963097 12963417 -72732337 + AluSx SINE Alu 1 303 -9 2890 241 68 58 chr15 12963417 12964462 -72731292 + L1ME2 LINE L1 5014 6085 -13 318 278 30 96 chr15 12964505 12964735 -72731019 + L1MC4 LINE L1 7826 8040 -2 1822 129 32 63 chr15 12965214 12965562 -72730192 + MER1B DNA MER1_type 1 337 0 22 0 0 0 chr15 12966119 12966141 -72729613 + AT_rich Low_complexity Low_complexity 1 22 0 279 79 0 0 chr15 12967311 12967349 -72728405 + (CA)n Simple_repeat Simple_repeat 2 39 0 223 283 0 0 chr15 12968339 12968399 -72727355 + (TA)n Simple_repeat Simple_repeat 2 61 0 422 211 10 0 chr15 12968645 12968749 -72727005 + CT-rich Low_complexity Low_complexity 1 105 0 273 329 13 0 chr15 12969902 12969981 -72725773 - L2 LINE L2 0 3272 3193 228 377 102 34 chr15 12969998 12970438 -72725316 + L3b LINE CR1 1108 1577 -6 25 19 8 0 chr15 12971955 12972029 -72723725 + AT_rich Low_complexity Low_complexity 1 32 0 26 82 0 0 chr15 12975516 12975577 -72720177 + AT_rich Low_complexity Low_complexity 1 61 0 613 239 73 27 chr15 12975593 12975852 -72719902 - L1ME LINE L1 -351 5770 5500 1170 251 27 7 chr15 12976198 12976497 -72719257 + LTR40b LTR ERVL 1 305 -157 209 242 74 0 chr15 12976819 12976914 -72718840 + T-rich Low_complexity Low_complexity 2 103 0 379 323 58 32 chr15 12976924 12977217 -72718537 - MLT1L LTR MaLR -5 610 279 256 200 100 0 chr15 12977383 12977443 -72718311 - MLT1L LTR MaLR -538 77 12 520 323 83 0 chr15 12977826 12978043 -72717711 - MIR SINE MIR -24 238 4 16305 100 16 33 chr15 12978685 12981607 -72714147 + HERVH LTR ERV1 373 2995 -4718 924 135 20 0 chr15 12981586 12981734 -72714020 + HERVH LTR ERV1 3140 3290 -4423 * 3421 103 2 6 chr15 12981724 12982228 -72713526 + HERVH LTR ERV1 3492 3993 -3720 4330 148 0 1 chr15 12982231 12982893 -72712861 + HERVH LTR ERV1 4489 5149 -2564 1388 124 18 5 chr15 12982894 12983111 -72712643 + HERVH LTR ERV1 5600 5819 -1894 * 2605 68 45 13 chr15 12983109 12983489 -72712265 + HERVH LTR ERV1 7322 7713 0 1896 45 4 8 chr15 12983489 12983733 -72712021 + LTR7 LTR ERV1 1 243 -207 34 24 0 0 chr15 12983883 12983924 -72711830 + AT_rich Low_complexity Low_complexity 1 41 0 31 76 0 0 chr15 12984131 12984197 -72711557 + AT_rich Low_complexity Low_complexity 1 66 0 597 310 82 3 chr15 12984311 12984614 -72711140 - HAL1b LINE L1 -727 621 295 433 203 68 79 chr15 12984625 12984802 -72710952 + MER104 DNA MER2_type 3 177 -3 280 256 107 18 chr15 12984969 12985137 -72710617 - L1M4 LINE L1 -1822 4324 4142 2018 136 3 7 chr15 12987801 12988109 -72707645 + AluY SINE Alu 1 307 -4 1750 178 10 20 chr15 12988538 12988842 -72706912 + AluJb SINE Alu 1 301 -11 1930 202 18 30 chr15 12989348 12989839 -72705915 + L1P LINE L1 4829 5313 -833 * 3103 231 28 2 chr15 12989835 12990442 -72705312 + L1PA15-16 LINE L1 641 1263 -5586 4779 217 25 4 chr15 12990454 12991368 -72704386 + L1PA15-16 LINE L1 714 1646 -5203 207 115 0 66 chr15 12991368 12991429 -72704325 + (TA)n Simple_repeat Simple_repeat 1 57 0 530 55 98 0 chr15 12991443 12991606 -72704148 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 238 105 58 35 chr15 12991638 12991724 -72704030 + (TA)n Simple_repeat Simple_repeat 2 89 0 7669 170 44 5 chr15 12991740 12993670 -72702084 + L1PA15-16 LINE L1 1663 3678 -3171 2800 145 16 42 chr15 12993771 12994210 -72701544 + MER6A DNA MER2_type 1 427 -438 2514 149 7 7 chr15 12994210 12994660 -72701094 + L1MA4 LINE L1 5848 6297 -3 2800 145 16 42 chr15 12994660 12994716 -72701038 + MER6A DNA MER2_type 427 483 -122 219 220 20 0 chr15 12994716 12994766 -72700988 + L2 LINE L2 3263 3313 0 24 32 0 0 chr15 12994902 12994933 -72700821 + AT_rich Low_complexity Low_complexity 1 31 0 291 238 106 13 chr15 12999380 12999531 -72696223 - L1ME4a LINE L1 -1 6120 5956 316 244 24 16 chr15 12999580 12999707 -72696047 - L1ME4a LINE L1 -253 5868 5741 1650 165 38 14 chr15 12999759 13000050 -72695704 + AluJo SINE Alu 1 298 -14 223 340 151 0 chr15 13002224 13002330 -72693424 + L2 LINE L2 3151 3272 0 201 219 31 0 chr15 13003418 13003482 -72692272 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 0 0 0 chr15 13003653 13003676 -72692078 + AT_rich Low_complexity Low_complexity 1 23 0 413 259 18 22 chr15 13004139 13004321 -72691433 + L2 LINE L2 3017 3271 -1 733 292 58 19 chr15 13004864 13005227 -72690527 - L1ME4a LINE L1 -225 5896 5520 382 173 0 25 chr15 13006163 13006244 -72689510 + MER53 DNA DNA 110 188 -1 1923 124 0 0 chr15 13006316 13006589 -72689165 + AluSc SINE Alu 37 309 0 1063 222 69 121 chr15 13007249 13007830 -72687924 + L1ME3A LINE L1 5620 6170 0 22433 37 2 0 chr15 13008875 13012399 -72683355 - L1PA5 LINE L1 -4 6150 2625 2480 30 0 0 chr15 13012399 13012701 -72683053 + L1PA5 LINE L1 2331 2632 -3514 245 106 0 21 chr15 13014552 13014599 -72681155 + (GA)n Simple_repeat Simple_repeat 1 46 0 192 188 0 83 chr15 13016335 13016383 -72679371 + MIR3 SINE MIR 162 205 -3 351 292 110 26 chr15 13016892 13017046 -72678708 + MIR SINE MIR 23 189 -73 2312 117 16 19 chr15 13017140 13017516 -72678238 + THE1C LTR MaLR 1 375 0 240 291 31 47 chr15 13017963 13018090 -72677664 + MLT1L LTR MaLR 87 211 -404 405 283 84 50 chr15 13018563 13018760 -72676994 - L1ME4a LINE L1 -111 6010 5821 414 0 0 0 chr15 13018760 13018806 -72676948 + (TA)n Simple_repeat Simple_repeat 1 46 0 405 283 84 50 chr15 13018806 13018825 -72676929 - L1ME4a LINE L1 -300 5821 5804 2317 55 3 22 chr15 13018825 13019136 -72676618 - AluY SINE Alu -6 305 1 405 283 84 50 chr15 13019136 13019326 -72676428 - L1ME4a LINE L1 -317 5804 5582 1861 176 39 0 chr15 13019326 13019661 -72676093 - MER7A DNA MER2_type 0 346 1 405 283 84 50 chr15 13019661 13019729 -72676025 - L1ME4a LINE L1 -539 5582 5518 22 0 0 0 chr15 13021395 13021417 -72674337 + AT_rich Low_complexity Low_complexity 1 22 0 1942 131 21 0 chr15 13021547 13021838 -72673916 - AluSx SINE Alu -15 297 1 23 54 0 0 chr15 13022401 13022438 -72673316 + AT_rich Low_complexity Low_complexity 1 37 0 418 272 169 44 chr15 13022963 13023362 -72672392 + MLT1H LTR MaLR 17 539 -10 4975 129 9 14 chr15 13023825 13024610 -72671144 - L1PA15 LINE L1 -3 6162 5382 1166 341 7 2 chr15 13024678 13025091 -72670663 - ERVL LTR ERVL -891 4873 4459 6101 128 4 2 chr15 13025108 13026063 -72669691 - L1PA10 LINE L1 -996 5150 4194 6091 100 19 5 chr15 13026063 13027032 -72668722 + L1PA10 LINE L1 5177 6157 -11 450 0 0 0 chr15 13027032 13027082 -72668672 + (TA)n Simple_repeat Simple_repeat 2 51 0 397 227 64 118 chr15 13027133 13027336 -72668418 - ERVL LTR ERVL -1329 4325 4134 610 339 68 49 chr15 13027638 13028861 -72666893 - ERVL LTR ERVL -1878 3776 2527 254 326 43 0 chr15 13029403 13029495 -72666259 - LTR16C LTR ERVL -145 346 251 2130 131 3 0 chr15 13030390 13030688 -72665066 - AluSg SINE Alu -11 299 1 329 258 97 16 chr15 13031277 13031401 -72664353 - LTR67 LTR ERVL -26 531 398 10935 201 25 55 chr15 13031494 13032334 -72663420 - L1MC3 LINE L1 0 8203 7339 1983 144 3 6 chr15 13032334 13032647 -72663107 - AluJb SINE Alu 0 312 1 2487 119 8 3 chr15 13032655 13033017 -72662737 + THE1B LTR MaLR 1 364 0 10935 201 25 55 chr15 13033017 13033889 -72661865 - L1MC3 LINE L1 -871 7332 6435 1930 171 3 0 chr15 13033889 13034198 -72661556 - AluJb SINE Alu -2 310 1 10935 201 25 55 chr15 13034198 13034360 -72661394 - L1MC3 LINE L1 -1768 6435 6270 266 229 0 0 chr15 13034360 13034408 -72661346 - MER66B LTR ERV1 -141 345 298 10935 201 25 55 chr15 13034408 13036058 -72659696 - L1MC3 LINE L1 -1933 6270 4726 2448 224 34 40 chr15 13036061 13037184 -72658570 - L1MC3 LINE L1 -4851 1194 551 314 303 16 25 chr15 13037664 13037786 -72657968 - MIR SINE MIR -41 221 101 1251 300 36 16 chr15 13037803 13038299 -72657455 - L1MC3 LINE L1 -5539 506 1 548 344 122 22 chr15 13038613 13039185 -72656569 + L2 LINE L2 2689 3313 0 443 320 86 6 chr15 13039708 13039883 -72655871 - MIR SINE MIR -7 255 69 234 258 34 22 chr15 13040586 13040675 -72655079 + (CATA)n Simple_repeat Simple_repeat 3 92 0 623 296 62 22 chr15 13041094 13041452 -72654302 - L1M4 LINE L1 -2749 3397 3026 422 108 14 27 chr15 13041657 13041731 -72654023 - AluJo SINE Alu -15 297 225 202 275 29 14 chr15 13041731 13041800 -72653954 - MIR SINE MIR -70 192 123 1089 186 22 35 chr15 13041817 13042043 -72653711 - AluJo SINE Alu -89 223 1 236 292 17 33 chr15 13042046 13042166 -72653588 - L1M4 LINE L1 -3382 2764 2647 5577 165 33 7 chr15 13042355 13044102 -72651652 - L1PA16 LINE L1 0 6166 4377 804 241 113 14 chr15 13044340 13044631 -72651123 - MER5C DNA MER1_type 0 324 5 432 227 73 14 chr15 13044795 13045020 -72650734 - MER20B DNA MER1_type -284 499 236 1623 203 136 50 chr15 13047236 13047818 -72647936 - LTR27 LTR ERV1 -2 634 3 5675 66 5 0 chr15 13047886 13049038 -72646716 + L1PA7 LINE L1 4821 5976 -178 994 142 0 0 chr15 13049038 13049186 -72646568 - AluSq/x SINE Alu -163 149 2 46 78 0 0 chr15 13052036 13052138 -72643616 + AT_rich Low_complexity Low_complexity 1 102 0 257 303 21 56 chr15 13052674 13052816 -72642938 - L3b LINE CR1 -136 1447 1311 2054 55 7 41 chr15 13053418 13053748 -72642006 + AluY SINE Alu 1 320 0 304 97 43 0 chr15 13054289 13054341 -72641413 - MLT2B1 LTR ERVL 0 520 391 249 250 31 0 chr15 13054342 13054406 -72641348 + (TATG)n Simple_repeat Simple_repeat 1 66 0 225 108 0 0 chr15 13054413 13054450 -72641304 + (CA)n Simple_repeat Simple_repeat 2 38 0 1510 222 43 2 chr15 13054451 13054860 -72640894 - MLT2B1 LTR ERVL -40 480 2 2255 125 19 27 chr15 13054986 13055353 -72640401 + THE1B LTR MaLR 1 364 0 2148 139 64 79 chr15 13057645 13058484 -72637270 + MER21A LTR ERV1 14 902 -29 180 211 228 0 chr15 13059552 13059609 -72636145 + L2 LINE L2 3241 3310 -3 432 310 95 0 chr15 13060886 13061044 -72634710 - MIR3 SINE MIR -12 196 24 336 333 76 20 chr15 13061924 13062122 -72633632 - MIR SINE MIR -13 249 41 1628 173 52 9 chr15 13062434 13062676 -72633078 + MER44D DNA MER2_type 1 231 -2260 1294 194 107 28 chr15 13062676 13062995 -72632759 - MER2 DNA MER2_type 0 344 1 1628 173 52 9 chr15 13062995 13063076 -72632678 + MER44D DNA MER2_type 231 608 -1 2087 150 28 3 chr15 13063117 13063471 -72632283 - MLT1A1 LTR MaLR -2 363 1 946 200 19 14 chr15 13063576 13063786 -72631968 - L1MD2 LINE L1 -2 6357 6147 5884 164 18 6 chr15 13064291 13066044 -72629710 - L1MA9 LINE L1 -2 6310 4536 5327 162 32 25 chr15 13066040 13066948 -72628806 + L1 LINE L1 3392 4311 -1835 * 2259 81 10 0 chr15 13066948 13067244 -72628510 + AluSp SINE Alu 1 299 -14 5327 162 32 25 chr15 13067244 13067453 -72628301 + L1 LINE L1 4311 4517 -1629 913 280 8 4 chr15 13067690 13067926 -72627828 + MIR SINE MIR 8 244 -18 42646 34 21 1 chr15 13068152 13074225 -72621529 - L1PA3 LINE L1 0 6155 4 21 36 0 0 chr15 13074225 13074253 -72621501 + AT_rich Low_complexity Low_complexity 1 28 0 440 125 0 68 chr15 13074473 13074561 -72621193 - L1PA14 LINE L1 -2 6159 6078 23 33 0 0 chr15 13074767 13074797 -72620957 + AT_rich Low_complexity Low_complexity 1 30 0 208 139 0 0 chr15 13075255 13075291 -72620463 + (A)n Simple_repeat Simple_repeat 1 36 0 2522 97 40 0 chr15 13075545 13075895 -72619859 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr15 13076739 13076760 -72618994 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 13076863 13076885 -72618869 + AT_rich Low_complexity Low_complexity 1 22 0 707 283 59 69 chr15 13077709 13078931 -72616823 + L1ME3A LINE L1 719 2131 -4130 * 1992 259 63 61 chr15 13078921 13079145 -72616609 + L1ME3A LINE L1 5200 5422 -682 2420 75 0 0 chr15 13079145 13079440 -72616314 + AluY SINE Alu 1 295 -16 1992 259 63 61 chr15 13079440 13080106 -72615648 + L1ME3A LINE L1 5422 6092 -12 219 214 22 56 chr15 13080392 13080481 -72615273 + A-rich Low_complexity Low_complexity 3 88 0 187 329 114 0 chr15 13080601 13080680 -72615074 - L2 LINE L2 -19 3294 3207 1463 194 19 50 chr15 13081521 13081841 -72613913 + AluJo SINE Alu 1 310 -2 968 159 93 11 chr15 13081854 13082036 -72613718 - MER2 DNA MER2_type -135 210 14 207 182 0 0 chr15 13082305 13082338 -72613416 - L3 LINE CR1 -10 1567 1535 276 341 163 31 chr15 13082778 13083103 -72612651 - L3 LINE CR1 -145 1432 1065 807 237 45 0 chr15 13083515 13083692 -72612062 + MER58B DNA MER1_type 157 341 0 828 189 6 17 chr15 13085192 13085367 -72610387 - MER96B DNA MER1_type? -244 173 1 212 143 0 0 chr15 13085574 13085609 -72610145 + (TC)n Simple_repeat Simple_repeat 2 36 0 274 273 82 0 chr15 13085609 13085719 -72610035 - MER103 DNA DNA -46 120 2 1897 264 47 24 chr15 13085746 13086300 -72609454 - MLT1F1 LTR MaLR 0 567 1 378 254 80 85 chr15 13086452 13086676 -72609078 + MLT1K LTR MaLR 10 232 -356 319 249 110 64 chr15 13086757 13086930 -72608824 + MLT1K LTR MaLR 400 580 -8 23 0 0 0 chr15 13088374 13088397 -72607357 + AT_rich Low_complexity Low_complexity 1 23 0 793 116 8 0 chr15 13088450 13088571 -72607183 + L1MA1 LINE L1 6175 6296 -6 21 36 0 0 chr15 13088571 13088599 -72607155 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr15 13088758 13088784 -72606970 + AT_rich Low_complexity Low_complexity 1 26 0 187 403 126 0 chr15 13089781 13089900 -72605854 - L2 LINE L2 -571 2743 2610 201 39 0 0 chr15 13090764 13090790 -72604964 + (TG)n Simple_repeat Simple_repeat 1 26 0 465 284 144 58 chr15 13092150 13092512 -72603242 - L2 LINE L2 -47 3266 2874 21 36 0 0 chr15 13093333 13093361 -72602393 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr15 13094389 13094416 -72601338 + AT_rich Low_complexity Low_complexity 1 27 0 203 294 239 0 chr15 13094855 13094947 -72600807 - L2 LINE L2 0 3272 3159 221 357 82 10 chr15 13095811 13095909 -72599845 + L2 LINE L2 3149 3253 -19 254 296 28 37 chr15 13096067 13096175 -72599579 - MIR SINE MIR 0 262 156 241 313 82 34 chr15 13096415 13096623 -72599131 - L2 LINE L2 -1391 1923 1706 275 89 0 0 chr15 13096981 13097026 -72598728 - L1ME4a LINE L1 -14 6107 6063 345 294 177 40 chr15 13097235 13097562 -72598192 - L1ME4a LINE L1 -266 5924 5553 232 246 54 54 chr15 13097929 13098059 -72597695 - L1ME4a LINE L1 -1113 5102 4973 1247 266 28 8 chr15 13098301 13098695 -72597059 + L1MB7 LINE L1 5782 6183 -1 24 0 0 0 chr15 13098748 13098772 -72596982 + AT_rich Low_complexity Low_complexity 1 24 0 336 354 110 9 chr15 13099886 13100214 -72595540 - ERVL LTR ERVL -572 5192 4832 473 276 74 20 chr15 13100673 13100876 -72594878 - LTR16A LTR ERVL -41 409 196 284 287 43 9 chr15 13100991 13101106 -72594648 - ERVL LTR ERVL -1680 4084 3966 647 216 58 124 chr15 13101276 13101517 -72594237 - LTR40b LTR ERVL -237 225 1 774 271 63 25 chr15 13101519 13101950 -72593804 - L1ME4a LINE L1 -2358 3857 3411 650 291 81 19 chr15 13101975 13102405 -72593349 + L1M4 LINE L1 3953 4409 -1737 * 3432 241 70 29 chr15 13102394 13102894 -72592860 + L1MB3 LINE L1 4152 4630 -1536 231 36 0 0 chr15 13102894 13102922 -72592832 + (AATAG)n Simple_repeat Simple_repeat 4 31 0 3432 241 70 29 chr15 13102922 13103162 -72592592 + L1MB3 LINE L1 4630 4859 -1307 2150 144 30 25 chr15 13103162 13103524 -72592230 + THE1B LTR MaLR 1 364 0 3432 241 70 29 chr15 13103524 13104253 -72591501 + L1MB3 LINE L1 4859 5679 -487 37 0 0 0 chr15 13104664 13104701 -72591053 + AT_rich Low_complexity Low_complexity 1 37 0 268 250 208 30 chr15 13107042 13107210 -72588544 + MLT1K LTR MaLR 96 293 -295 866 273 105 20 chr15 13107211 13107772 -72587982 - L1M4 LINE L1 -1300 4846 4238 655 162 77 49 chr15 13107772 13108000 -72587754 - MER106B DNA MER1_type 0 1059 1 673 291 93 12 chr15 13108080 13108424 -72587330 - L1ME4a LINE L1 -4748 1648 1277 28 71 0 0 chr15 13109328 13109384 -72586370 + AT_rich Low_complexity Low_complexity 1 56 0 267 123 15 31 chr15 13109901 13109966 -72585788 + (TA)n Simple_repeat Simple_repeat 1 64 0 192 179 0 0 chr15 13110189 13110228 -72585526 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 283 275 101 7 chr15 13110555 13110693 -72585061 + L1ME4a LINE L1 5892 6042 -79 394 295 71 55 chr15 13111021 13111275 -72584479 + MER102b DNA MER1_type 82 339 -2 2115 153 75 23 chr15 13111421 13111481 -72584273 + L1MB3 LINE L1 5720 5775 -408 2504 114 22 0 chr15 13111481 13111848 -72583906 + THE1C LTR MaLR 1 375 0 2115 153 75 23 chr15 13111848 13112226 -72583528 + L1MB3 LINE L1 5775 6181 -2 243 125 0 0 chr15 13113675 13113715 -72582039 + (TC)n Simple_repeat Simple_repeat 2 41 0 222 298 0 0 chr15 13113716 13113773 -72581981 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 22 0 0 0 chr15 13114512 13114534 -72581220 + AT_rich Low_complexity Low_complexity 1 22 0 254 390 8 0 chr15 13114614 13114732 -72581022 - MIR3 SINE MIR -13 195 77 254 356 59 7 chr15 13115189 13115324 -72580430 - MIR SINE MIR -33 229 88 554 262 13 0 chr15 13115434 13115583 -72580171 - L1MA10 LINE L1 -1 6333 6183 * 4367 221 48 66 chr15 13115578 13116284 -72579470 - L1M4 LINE L1 -1563 4583 3866 1163 211 160 13 chr15 13116284 13116602 -72579152 + MLT1A1 LTR MaLR 1 365 0 4367 221 48 66 chr15 13116602 13116642 -72579112 - L1M4 LINE L1 -2280 3866 3827 1176 184 126 50 chr15 13116642 13116919 -72578835 - AluJo SINE Alu -4 298 1 4367 221 48 66 chr15 13116919 13117871 -72577883 - L1M4 LINE L1 -2319 3827 2915 1999 148 3 3 chr15 13117946 13118256 -72577498 + AluSx SINE Alu 3 312 0 247 356 0 0 chr15 13118606 13118693 -72577061 - L2 LINE L2 0 3313 3227 280 301 110 31 chr15 13118970 13119133 -72576621 + MIR SINE MIR 31 206 -56 466 356 97 25 chr15 13119257 13119805 -72575949 - L2 LINE L2 -467 2847 2261 254 381 83 40 chr15 13120352 13120677 -72575077 - L2 LINE L2 -16 3256 2918 238 276 48 57 chr15 13122576 13122681 -72573073 - L2 LINE L2 -5 3267 3164 23 33 0 0 chr15 13122718 13122748 -72573006 + AT_rich Low_complexity Low_complexity 1 30 0 7221 40 6 9 chr15 13123240 13124289 -72571465 + L1PA7 LINE L1 5106 6151 -3 4582 139 32 8 chr15 13125158 13125950 -72569804 - L1MA5A LINE L1 -5 6934 6124 3962 147 15 41 chr15 13125950 13126678 -72569076 - MER50 LTR ERV1 -25 709 1 13152 211 35 26 chr15 13126679 13128488 -72567266 - L1MA5A LINE L1 -743 6045 4254 198 71 0 0 chr15 13128488 13128516 -72567238 + (TG)n Simple_repeat Simple_repeat 2 29 0 13152 211 35 26 chr15 13128516 13128973 -72566781 - L1MA5A LINE L1 -2534 4254 3803 1675 169 6 29 chr15 13128973 13129286 -72566468 - AluJo SINE Alu -6 306 1 13152 211 35 26 chr15 13129286 13132190 -72563564 - L1MA5A LINE L1 -2985 3803 889 1487 236 92 36 chr15 13132252 13132739 -72563015 + LTR48B LTR ERV1 122 542 0 580 190 86 9 chr15 13133558 13133674 -72562080 - MER63 DNA MER1_type -311 751 1 473 242 168 0 chr15 13134356 13134505 -72561249 - MIR SINE MIR 0 262 89 21 36 0 0 chr15 13134992 13135020 -72560734 + AT_rich Low_complexity Low_complexity 1 28 0 380 269 162 78 chr15 13135567 13135838 -72559916 + MLT1I LTR MaLR 98 391 -18 27 0 0 0 chr15 13138271 13138298 -72557456 + AT_rich Low_complexity Low_complexity 1 27 0 240 273 15 0 chr15 13138522 13138588 -72557166 + (TG)n Simple_repeat Simple_repeat 2 68 0 197 316 63 0 chr15 13140037 13140132 -72555622 - MIR SINE MIR -97 165 65 1188 227 63 16 chr15 13140896 13141213 -72554541 - L1MC4 LINE L1 -1097 6945 6614 1164 241 48 38 chr15 13141305 13141954 -72553800 - L1MC4 LINE L1 -1190 6618 6041 1473 254 62 15 chr15 13142083 13142619 -72553135 - L1MC4 LINE L1 -1972 5836 5276 713 272 109 53 chr15 13142616 13143486 -72552268 - L1ME LINE L1 -611 5622 4688 * 225 178 0 0 chr15 13143527 13143572 -72552182 + (CA)n Simple_repeat Simple_repeat 1 45 0 796 242 73 10 chr15 13143572 13143861 -72551893 - L1ME LINE L1 -1522 4693 4387 699 81 30 0 chr15 13143952 13144051 -72551703 + LTR22B LTR ERVK 1 102 -390 34 55 0 0 chr15 13144506 13144561 -72551193 + AT_rich Low_complexity Low_complexity 1 55 0 6415 186 56 24 chr15 13144672 13146042 -72549712 + MER52A LTR ERV1 374 1755 0 704 291 97 31 chr15 13146046 13146758 -72548996 - L1ME LINE L1 -3202 3013 2255 339 314 133 48 chr15 13146824 13147133 -72548621 - L1ME LINE L1 -4188 2208 1874 1918 72 0 12 chr15 13147760 13148009 -72547745 - AluY SINE Alu -21 290 45 316 295 116 90 chr15 13148191 13148578 -72547176 - L1ME LINE L1 -5706 499 103 246 257 43 0 chr15 13149094 13149164 -72546590 - L1M4c LINE L1 -4389 2460 2388 400 279 91 90 chr15 13149241 13149811 -72545943 - L1M4c LINE L1 -4974 2055 1334 1440 287 53 9 chr15 13149851 13150287 -72545467 - LTR16C LTR ERVL -9 482 28 25 31 0 0 chr15 13150932 13150964 -72544790 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 13151818 13151841 -72543913 + AT_rich Low_complexity Low_complexity 1 23 0 256 368 101 33 chr15 13154011 13154348 -72541406 + L2 LINE L2 2397 2756 -558 23 0 0 0 chr15 13154640 13154663 -72541091 + AT_rich Low_complexity Low_complexity 1 23 0 223 234 0 0 chr15 13155097 13155144 -72540610 + (TG)n Simple_repeat Simple_repeat 2 48 0 1053 218 137 73 chr15 13155315 13155370 -72540384 - L1MEc LINE L1 -3346 2869 2819 2288 110 3 0 chr15 13155370 13155678 -72540076 + AluSx SINE Alu 3 311 -1 1053 218 137 73 chr15 13155678 13156199 -72539555 - L1MEc LINE L1 -3396 2819 2256 507 282 102 76 chr15 13156422 13157345 -72538409 - L1MEc LINE L1 -4590 1806 860 254 254 0 0 chr15 13158065 13158124 -72537630 - L1MEc LINE L1 -5952 253 195 279 307 147 37 chr15 13158849 13159067 -72536687 - MLT1L LTR MaLR 0 615 374 1536 216 74 29 chr15 13159815 13159836 -72535918 + L1MB7 LINE L1 5667 5686 -498 1881 131 180 11 chr15 13159836 13160202 -72535552 + MSTA LTR MaLR 1 428 0 1536 216 74 29 chr15 13160202 13160601 -72535153 + L1MB7 LINE L1 5686 6106 -78 349 228 30 20 chr15 13164622 13164723 -72531031 - MLT1I LTR MaLR 0 409 308 2146 153 3 0 chr15 13164864 13165204 -72530550 - pTR5 LTR ERV1 -2046 392 52 319 214 0 36 chr15 13165204 13165288 -72530466 - LTR30 LTR ERV1 -98 624 544 3336 153 49 33 chr15 13165293 13166094 -72529660 - pTR5 LTR ERV1 -417 2021 733 202 333 0 65 chr15 13166263 13166356 -72529398 - MIR SINE MIR -102 106 20 227 339 79 0 chr15 13166516 13166633 -72529121 - MIR SINE MIR -61 147 24 1085 135 53 19 chr15 13167051 13167259 -72528495 - L1PA8 LINE L1 -3 6169 5955 513 0 0 0 chr15 13168361 13168418 -72527336 + (TA)n Simple_repeat Simple_repeat 2 58 0 2341 94 0 10 chr15 13168418 13168717 -72527037 - AluSx SINE Alu -8 304 7 5212 94 12 6 chr15 13168885 13169617 -72526137 - L1PA11 LINE L1 -2 6172 5436 1544 69 0 5 chr15 13169617 13169894 -72525860 + L1P LINE L1 5152 5427 -734 183 403 73 21 chr15 13170055 13170343 -72525411 + L2 LINE L2 2386 2688 -626 2037 64 0 8 chr15 13170729 13170980 -72524774 + AluY SINE Alu 39 287 -24 230 250 0 0 chr15 13171637 13171709 -72524045 - L1MC4 LINE L1 -1336 6706 6635 223 27 27 27 chr15 13172930 13172967 -72522787 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 2060 126 0 10 chr15 13173489 13173790 -72521964 - AluSx SINE Alu -6 306 9 340 344 32 13 chr15 13173801 13173958 -72521796 - MIR SINE MIR -66 196 37 430 275 151 82 chr15 13174043 13174447 -72521307 + HAL1 LINE L1 1 432 -2075 1901 108 36 14 chr15 13174990 13175290 -72520464 + AluSx SINE Alu 1 306 0 1332 169 72 41 chr15 13175447 13175737 -72520017 - AluJb SINE Alu -3 299 1 443 176 29 0 chr15 13175737 13175839 -72519915 - L1MC3 LINE L1 -330 7455 7351 21 57 0 0 chr15 13175965 13176000 -72519754 + AT_rich Low_complexity Low_complexity 1 35 0 1842 279 91 42 chr15 13176010 13177062 -72518692 - L1M4 LINE L1 -1014 5132 3978 5450 131 24 5 chr15 13177062 13178413 -72517341 - L1PA13 LINE L1 -13 6150 4786 1842 279 91 42 chr15 13178413 13178903 -72516851 - L1M4 LINE L1 -2168 3978 3514 357 267 62 21 chr15 13179028 13179268 -72516486 - L1M4 LINE L1 -3056 3090 2841 432 0 0 0 chr15 13179304 13179352 -72516402 + (A)n Simple_repeat Simple_repeat 1 48 0 27 0 0 0 chr15 13179408 13179435 -72516319 + AT_rich Low_complexity Low_complexity 1 27 0 982 234 104 27 chr15 13179855 13180231 -72515523 + L1ME1 LINE L1 5759 6163 -3 775 283 86 29 chr15 13180238 13180769 -72514985 + L1ME3A LINE L1 4378 4955 -1191 2161 80 11 3 chr15 13180769 13181086 -72514668 + AluY SINE Alu 1 319 0 775 283 86 29 chr15 13181086 13181203 -72514551 + L1ME3A LINE L1 4955 5064 -1082 1186 254 143 25 chr15 13181210 13181811 -72513943 + L1ME3A LINE L1 5459 6160 -10 252 310 0 14 chr15 13182050 13182121 -72513633 + L2 LINE L2 3201 3270 -2 212 264 76 36 chr15 13182291 13182401 -72513353 + MER5A DNA MER1_type 27 150 -39 661 205 18 18 chr15 13183771 13184050 -72511704 + CT-rich Low_complexity Low_complexity 1 279 0 22 70 0 0 chr15 13184134 13184177 -72511577 + AT_rich Low_complexity Low_complexity 1 43 0 1753 163 40 9 chr15 13184861 13185211 -72510543 - L1PA16 LINE L1 -16 6150 5790 556 291 114 46 chr15 13186613 13187050 -72508704 + MLT1J LTR MaLR 1 467 -44 299 292 62 39 chr15 13189883 13190061 -72505693 - LTR33 LTR ERVL -65 456 275 254 258 42 58 chr15 13190825 13190945 -72504809 + L2 LINE L2 2974 3091 -181 239 333 0 15 chr15 13190977 13191043 -72504711 - MIR SINE MIR -175 87 23 32 26 0 0 chr15 13191802 13191841 -72503913 + AT_rich Low_complexity Low_complexity 1 39 0 549 279 97 19 chr15 13191844 13192344 -72503410 - L1MDb LINE L1 -4951 1607 1147 261 0 0 0 chr15 13192636 13192665 -72503089 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 562 335 31 0 chr15 13193223 13193384 -72502370 + MIR3 SINE MIR 32 197 -11 352 251 84 70 chr15 13194831 13195046 -72500708 - L1ME LINE L1 -335 5786 5569 23 0 0 0 chr15 13195089 13195112 -72500642 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 13196113 13196137 -72499617 + AT_rich Low_complexity Low_complexity 1 24 0 2653 135 9 32 chr15 13196968 13197406 -72498348 - LTR12 LTR ERV1 -234 480 53 227 280 0 0 chr15 13197406 13197456 -72498298 - LTR30 LTR ERV1 -670 52 3 1457 186 0 53 chr15 13198270 13198571 -72497183 + AluJo SINE Alu 1 285 -27 792 276 135 52 chr15 13198754 13199235 -72496519 + LTR33 LTR ERVL 1 521 0 296 125 0 18 chr15 13199321 13199377 -72496377 + (TG)n Simple_repeat Simple_repeat 2 56 0 2193 125 0 0 chr15 13199403 13199698 -72496056 + AluSx SINE Alu 5 299 -13 282 338 32 52 chr15 13200161 13200315 -72495439 + MER102b DNA MER1_type 152 302 -39 320 274 82 67 chr15 13200428 13200563 -72495191 - L2 LINE L2 0 3313 3177 14616 125 25 13 chr15 13200572 13202040 -72493714 + Tigger1 DNA MER2_type 93 1599 -819 2256 114 0 3 chr15 13202040 13202337 -72493417 + AluSq SINE Alu 1 296 -17 14616 125 25 13 chr15 13202337 13203167 -72492587 + Tigger1 DNA MER2_type 1599 2418 0 1690 250 67 13 chr15 13203168 13203760 -72491994 - L1M4c LINE L1 -4271 2375 1657 621 294 60 12 chr15 13203797 13204045 -72491709 - L1M4c LINE L1 -6275 267 8 22 94 0 0 chr15 13204049 13204113 -72491641 + AT_rich Low_complexity Low_complexity 1 64 0 3122 187 29 0 chr15 13204184 13204730 -72491024 - MER68 LTR ERV1 0 562 1 1694 197 34 21 chr15 13205365 13205750 -72490004 - MLT1B LTR MaLR 0 390 1 227 327 59 0 chr15 13206639 13206740 -72489014 + MER91C DNA MER1_type 34 140 0 194 283 76 83 chr15 13208347 13208492 -72487262 - MER5A DNA MER1_type -3 186 43 * 418 326 30 8 chr15 13208387 13208519 -72487235 + MER5A DNA MER1_type 55 189 0 532 210 29 29 chr15 13209189 13209327 -72486427 + MLT1A1 LTR MaLR 228 365 0 1159 197 20 63 chr15 13209330 13209567 -72486187 + MLT1C LTR MaLR 239 423 -5 26 30 0 0 chr15 13209892 13209925 -72485829 + AT_rich Low_complexity Low_complexity 1 33 0 200 176 0 0 chr15 13209970 13210004 -72485750 + (CA)n Simple_repeat Simple_repeat 1 34 0 258 81 0 0 chr15 13210077 13210114 -72485640 + (CA)n Simple_repeat Simple_repeat 2 38 0 499 269 48 0 chr15 13210121 13210329 -72485425 + L1MC4a LINE L1 5694 5911 -1897 31 44 0 0 chr15 13210518 13210563 -72485191 + AT_rich Low_complexity Low_complexity 1 45 0 315 272 88 80 chr15 13210583 13210833 -72484921 + L1ME4a LINE L1 5636 5887 -234 270 236 45 56 chr15 13212472 13212561 -72483193 + MIR SINE MIR 23 110 -152 2264 112 0 0 chr15 13212804 13213100 -72482654 - AluSg SINE Alu -12 298 3 2361 190 109 16 chr15 13213187 13213746 -72482008 - MER90 LTR ERV1 0 614 4 428 191 177 32 chr15 13213776 13213996 -72481758 + MER113 DNA MER1_type? 12 263 -258 298 212 153 59 chr15 13214589 13214707 -72481047 + MIR SINE MIR 70 198 -64 224 337 0 0 chr15 13215771 13215863 -72479891 + T-rich Low_complexity Low_complexity 1 92 0 937 178 59 5 chr15 13215916 13216135 -72479619 - L1MA4 LINE L1 -6 6294 6064 195 355 75 0 chr15 13216383 13216476 -72479278 + L2 LINE L2 3153 3252 -20 624 182 0 9 chr15 13216553 13216663 -72479091 - Tigger2a DNA MER2_type -325 109 1 22 35 0 0 chr15 13217480 13217509 -72478245 + AT_rich Low_complexity Low_complexity 1 29 0 233 125 78 47 chr15 13218253 13218381 -72477373 + (TATAA)n Simple_repeat Simple_repeat 3 134 0 * 239 233 30 15 chr15 13218288 13218421 -72477333 + (TA)n Simple_repeat Simple_repeat 1 135 0 291 225 28 0 chr15 13218555 13218626 -72477128 - LTR33A LTR ERVL 0 523 451 324 258 212 12 chr15 13218650 13218951 -72476803 - LTR50 LTR ERVL -322 473 38 1972 124 0 7 chr15 13219641 13219948 -72475806 + L1PA8 LINE L1 5868 6172 0 567 306 49 6 chr15 13220277 13220460 -72475294 + MIR SINE MIR 57 247 -15 289 116 0 0 chr15 13220823 13220866 -72474888 - tRNA-Gln-CAG tRNA tRNA -32 43 1 181 339 159 22 chr15 13221306 13221533 -72474221 + L2 LINE L2 2996 3253 -19 217 342 114 25 chr15 13222252 13222489 -72473265 + L2 LINE L2 2996 3253 -19 288 278 127 8 chr15 13223202 13223328 -72472426 - MIR SINE MIR -1 261 121 206 288 45 0 chr15 13223566 13223632 -72472122 - L2 LINE L2 0 3272 3204 746 203 14 0 chr15 13224210 13224358 -72471396 + MLT2B1 LTR ERVL 13 162 -358 4470 35 0 26 chr15 13224359 13224968 -72470786 - L1PA2 LINE L1 0 6155 5563 779 208 6 50 chr15 13225230 13225389 -72470365 + FRAM SINE Alu 3 154 -22 431 226 61 0 chr15 13225752 13225867 -72469887 - MER69A DNA AcHobo 0 177 56 197 394 0 39 chr15 13226035 13226139 -72469615 - L2 LINE L2 -182 3090 2991 239 282 26 26 chr15 13227830 13227908 -72467846 + MER5A DNA MER1_type 80 157 -32 819 173 0 0 chr15 13229495 13229628 -72466126 - FLAM_A SINE Alu 0 133 1 1720 159 32 15 chr15 13229643 13229982 -72465772 - L1MB3 LINE L1 -8 6175 5831 1485 110 17 0 chr15 13229983 13230219 -72465535 + L1P LINE L1 4837 5076 -1070 13347 205 32 14 chr15 13230352 13233156 -72462598 - L1M4 LINE L1 -906 5476 2528 1217 228 118 0 chr15 13233156 13233419 -72462335 + AluJo SINE Alu 1 294 -8 13347 205 32 14 chr15 13233419 13235973 -72459781 - L1M4 LINE L1 -3854 2528 21 2015 132 0 3 chr15 13236273 13236569 -72459185 + AluSx SINE Alu 1 295 -17 5853 169 34 13 chr15 13237986 13239499 -72456255 - L1MC1 LINE L1 0 6333 4787 233 179 0 18 chr15 13239960 13240016 -72455738 + CT-rich Low_complexity Low_complexity 4 58 0 2310 259 88 13 chr15 13240137 13241490 -72454264 + L1ME2 LINE L1 4699 6155 -9 205 193 53 0 chr15 13241499 13241556 -72454198 + (TA)n Simple_repeat Simple_repeat 2 61 0 8296 148 16 35 chr15 13241564 13243393 -72452361 + L1PA11 LINE L1 3882 5677 -497 1983 116 40 10 chr15 13243393 13243694 -72452060 - AluY SINE Alu -1 310 1 8296 148 16 35 chr15 13243694 13244177 -72451577 + L1PA11 LINE L1 5677 6168 -6 337 284 47 24 chr15 13244334 13244461 -72451293 + HAL1 LINE L1 1327 1456 -1051 299 368 7 0 chr15 13244528 13244664 -72451090 + HAL1 LINE L1 1578 1714 -793 25 51 0 0 chr15 13244742 13244781 -72450973 + AT_rich Low_complexity Low_complexity 1 39 0 339 186 133 9 chr15 13244852 13244965 -72450789 + L1M4 LINE L1 4303 4429 -1717 1476 138 22 4 chr15 13245305 13245536 -72450218 + MLT1C LTR MaLR 1 235 -232 594 222 15 44 chr15 13245543 13245735 -72450019 + MSTC LTR MaLR 3 183 -182 182 346 104 20 chr15 13297318 13297520 -72398234 + L2 LINE L2 2829 3047 -225 238 224 0 0 chr15 13297620 13297669 -72398085 + L2 LINE L2 3264 3312 -1 1720 153 47 10 chr15 13298416 13298717 -72397037 - AluJb SINE Alu 0 312 1 255 125 0 0 chr15 13298841 13298881 -72396873 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 811 324 72 25 chr15 13298951 13299129 -72396625 + MLT1K LTR MaLR 111 279 -309 327 25 0 0 chr15 13299129 13299169 -72396585 + (TG)n Simple_repeat Simple_repeat 2 41 0 811 324 72 25 chr15 13299169 13299434 -72396320 + MLT1K LTR MaLR 279 575 -13 1015 184 0 0 chr15 13299439 13299602 -72396152 + FRAM SINE Alu 1 160 -16 2527 36 7 0 chr15 13301398 13301700 -72394054 + AluY SINE Alu 1 304 -7 23 0 0 0 chr15 13302066 13302089 -72393665 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 13302498 13302520 -72393234 + AT_rich Low_complexity Low_complexity 1 22 0 218 242 0 45 chr15 13303330 13303396 -72392358 + MIR SINE MIR 29 91 -171 204 194 0 0 chr15 13303398 13303434 -72392320 - MIR SINE MIR -60 148 113 195 42 0 0 chr15 13304407 13304431 -72391323 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 773 205 0 0 chr15 13304460 13304587 -72391167 - FAM SINE Alu -41 144 18 233 56 0 28 chr15 13304596 13304632 -72391122 + (TTG)n Simple_repeat Simple_repeat 2 36 0 679 171 41 7 chr15 13304803 13304949 -72390805 + L1MC4a LINE L1 7070 7220 -588 261 0 0 0 chr15 13305049 13305078 -72390676 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 2226 80 7 3 chr15 13306505 13306791 -72388963 + AluY SINE Alu 1 287 -24 290 291 236 0 chr15 13307255 13307365 -72388389 - MIR SINE MIR -33 229 94 658 227 39 7 chr15 13308001 13308155 -72387599 + MER63A DNA MER1_type 52 210 0 726 258 18 109 chr15 13308166 13308496 -72387258 + MER102b DNA MER1_type 33 332 -9 183 309 124 31 chr15 13308523 13308620 -72387134 + MIR3 SINE MIR 64 169 -39 23 0 0 0 chr15 13310508 13310531 -72385223 + AT_rich Low_complexity Low_complexity 1 23 0 210 150 0 0 chr15 13310665 13310705 -72385049 + (A)n Simple_repeat Simple_repeat 1 40 0 1810 159 0 3 chr15 13311890 13312180 -72383574 - AluJo SINE Alu -23 289 1 204 228 0 0 chr15 13312550 13312607 -72383147 + CT-rich Low_complexity Low_complexity 4 60 0 258 56 0 0 chr15 13312695 13312731 -72383023 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr15 13313117 13313139 -72382615 + AT_rich Low_complexity Low_complexity 1 22 0 2325 79 3 0 chr15 13314236 13314528 -72381226 - AluSp SINE Alu -20 293 1 184 256 73 24 chr15 13314559 13314641 -72381113 + L2 LINE L2 2272 2357 -957 242 242 0 66 chr15 13315131 13315222 -72380532 - L1ME2 LINE L1 -1 6163 6079 274 358 138 31 chr15 13315713 13316227 -72379527 - L2 LINE L2 -511 2803 2235 488 323 88 18 chr15 13316250 13316467 -72379287 + LTR33 LTR ERVL 37 268 -253 528 194 105 0 chr15 13316551 13316675 -72379079 + LTR33 LTR ERVL 382 518 -3 203 299 165 29 chr15 13317030 13317381 -72378373 - L2 LINE L2 -1307 2007 1609 1567 197 32 46 chr15 13317388 13317619 -72378135 - MLT1A1 LTR MaLR 0 365 139 2153 142 132 5 chr15 13317619 13317999 -72377755 - MSTA LTR MaLR 0 428 1 1567 197 32 46 chr15 13317999 13318137 -72377617 - MLT1A1 LTR MaLR -226 139 1 2259 119 47 11 chr15 13318369 13318731 -72377023 - THE1C LTR MaLR 0 375 1 5184 117 19 7 chr15 13318731 13319482 -72376272 - THE1C-int LTR MaLR 0 1580 821 791 163 129 0 chr15 13319582 13319729 -72376025 + AluSc SINE Alu 130 295 -14 537 318 69 19 chr15 13319732 13319993 -72375761 - L2 LINE L2 -810 2504 2231 2201 96 4 0 chr15 13320000 13320307 -72375447 - AluSg SINE Alu 0 308 1 629 98 0 0 chr15 13320500 13320592 -72375162 + AluSc SINE Alu 173 264 -45 1348 91 23 0 chr15 13321613 13321789 -72373965 + AluSc SINE Alu 97 276 -33 1106 118 11 0 chr15 13321790 13321877 -72373877 + (GAAA)n Simple_repeat Simple_repeat 1 267 0 1106 118 11 0 chr15 13321877 13322055 -72373699 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2596 139 31 2 chr15 13322371 13322787 -72372967 - MSTA LTR MaLR 0 428 1 358 303 134 0 chr15 13322993 13323112 -72372642 - MIR SINE MIR -33 229 95 413 304 58 12 chr15 13323308 13323479 -72372275 + MIR SINE MIR 27 205 -57 2144 102 27 3 chr15 13323590 13323883 -72371871 - AluSg SINE Alu -10 300 1 841 279 126 17 chr15 13324618 13324923 -72370831 + MLT1J2 LTR MaLR 5 333 -113 231 36 0 0 chr15 13325422 13325450 -72370304 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 13325732 13325759 -72369995 + AT_rich Low_complexity Low_complexity 1 27 0 198 171 0 0 chr15 13326875 13326916 -72368838 + (CA)n Simple_repeat Simple_repeat 1 41 0 646 268 114 15 chr15 13329487 13329759 -72365995 + L1MC4a LINE L1 5613 5911 -1897 2156 113 6 16 chr15 13330719 13331030 -72364724 + AluSg SINE Alu 1 308 -2 1914 131 38 0 chr15 13331046 13331336 -72364418 + AluSx SINE Alu 1 301 -11 192 314 128 69 chr15 13331727 13331829 -72363925 + L2 LINE L2 3134 3241 -31 2313 109 3 0 chr15 13331833 13332135 -72363619 - AluSx SINE Alu -9 303 1 373 219 0 0 chr15 13332241 13332305 -72363449 + L2 LINE L2 3243 3306 -7 198 171 0 0 chr15 13332311 13332352 -72363402 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1274 189 60 0 chr15 13334261 13334563 -72361191 - MER33 DNA MER1_type -4 320 1 514 202 11 0 chr15 13335923 13336017 -72359737 + FLAM_A SINE Alu 2 96 -46 217 284 83 28 chr15 13336036 13336145 -72359609 - MIR SINE MIR 0 262 148 367 301 48 0 chr15 13336609 13336712 -72359042 - L2 LINE L2 -1 3312 3205 180 333 107 0 chr15 13336846 13336921 -72358833 - L2 LINE L2 -205 3067 2985 365 308 164 13 chr15 13336925 13337084 -72358670 + MER5A DNA MER1_type 7 189 0 738 299 211 16 chr15 13337107 13337719 -72358035 - L2 LINE L2 -354 2960 2230 2054 119 32 66 chr15 13339470 13339847 -72355907 - THE1B LTR MaLR 0 364 1 2232 99 0 7 chr15 13344072 13344366 -72351388 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr15 13345332 13345360 -72350394 + AT_rich Low_complexity Low_complexity 1 28 0 898 238 31 39 chr15 13345579 13345865 -72349889 + L3b LINE CR1 1108 1391 -192 22 35 0 0 chr15 13346172 13346201 -72349553 + AT_rich Low_complexity Low_complexity 1 29 0 3950 126 70 3 chr15 13347717 13348342 -72347412 - THE1C-int LTR MaLR -912 668 2 1916 150 50 17 chr15 13348363 13348724 -72347030 - THE1C LTR MaLR -2 373 1 731 290 28 48 chr15 13349557 13349805 -72345949 + MIR SINE MIR 2 244 -18 1712 116 93 4 chr15 13349818 13350140 -72345614 - AluSg SINE Alu 0 345 1 261 262 122 28 chr15 13350352 13350459 -72345295 - MIR SINE MIR -132 130 14 22 35 0 0 chr15 13351128 13351157 -72344597 + AT_rich Low_complexity Low_complexity 1 29 0 721 238 12 42 chr15 13351533 13351701 -72344053 + MER63A DNA MER1_type 46 208 -2 394 308 122 35 chr15 13351732 13351904 -72343850 + MIR SINE MIR 47 233 -29 1519 183 3 7 chr15 13351927 13352216 -72343538 - L1MB7 LINE L1 -192 6490 6203 357 98 66 16 chr15 13352214 13352275 -72343479 + L1M4 LINE L1 4530 4593 -1553 * 378 208 0 0 chr15 13352290 13352362 -72343392 + L1M4 LINE L1 4829 4900 -1246 912 154 45 224 chr15 13352366 13352703 -72343051 - L1MB7 LINE L1 -627 6045 5650 1945 108 25 4 chr15 13352703 13353028 -72342726 - AluSq SINE Alu 0 331 1 912 154 45 224 chr15 13353028 13353329 -72342425 - L1MB7 LINE L1 -1022 5650 5297 511 86 0 0 chr15 13353329 13353399 -72342355 + AluS SINE Alu 1 70 -243 912 154 45 224 chr15 13353399 13353636 -72342118 - L1MB7 LINE L1 -1375 5297 5357 2156 117 7 0 chr15 13353636 13353934 -72341820 + AluSx SINE Alu 1 300 -12 912 154 45 224 chr15 13353934 13353960 -72341794 - L1MB7 LINE L1 -1314 5358 5329 4146 219 129 26 chr15 13353977 13354839 -72340915 - L1MB7 LINE L1 -1553 5091 4318 2198 100 0 30 chr15 13354839 13355140 -72340614 + AluSx SINE Alu 1 292 -20 4146 219 129 26 chr15 13355140 13355824 -72339930 - L1MB7 LINE L1 -2326 4318 3387 399 318 40 7 chr15 13355842 13355993 -72339761 - L1MB7 LINE L1 -6064 478 323 233 213 0 66 chr15 13356017 13356078 -72339676 - L1MB7 LINE L1 -6275 267 211 406 344 58 36 chr15 13356133 13356357 -72339397 + MIR SINE MIR 28 256 -6 297 361 52 16 chr15 13356522 13356713 -72339041 + MIR SINE MIR 2 199 -63 191 342 27 45 chr15 13357070 13357181 -72338573 - MIR SINE MIR -78 130 22 452 271 49 49 chr15 13357432 13357635 -72338119 - MLT1L LTR MaLR -60 555 353 2220 92 0 7 chr15 13360386 13360722 -72335032 - AluY SINE Alu 0 311 1 235 246 33 33 chr15 13360795 13360856 -72334898 - MIR SINE MIR -78 130 70 23 0 0 0 chr15 13361203 13361226 -72334528 + AT_rich Low_complexity Low_complexity 1 23 0 2358 68 10 0 chr15 13361616 13361924 -72333830 - AluY SINE Alu 0 311 1 480 35 0 0 chr15 13362466 13362524 -72333230 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2125 110 0 40 chr15 13365062 13365361 -72330393 - AluSg SINE Alu -23 287 1 2211 95 3 0 chr15 13365439 13365723 -72330031 + AluSp SINE Alu 28 312 -1 22 0 0 0 chr15 13366824 13366846 -72328908 + AT_rich Low_complexity Low_complexity 1 22 0 340 298 74 54 chr15 13369711 13369969 -72325785 - MLT1J LTR MaLR -246 265 3 202 239 75 60 chr15 13370577 13370644 -72325110 - L2 LINE L2 0 3313 3246 262 299 43 43 chr15 13372176 13372293 -72323461 - MIR SINE MIR -63 145 29 536 125 0 45 chr15 13372426 13372514 -72323240 - AluJ/FLAM SINE Alu -228 84 1 1512 183 0 24 chr15 13372678 13372973 -72322781 + AluJb SINE Alu 1 288 -24 387 0 0 0 chr15 13372974 13373017 -72322737 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3782 177 59 9 chr15 13373352 13374293 -72321461 + L1MB7 LINE L1 5176 6167 -17 180 111 0 0 chr15 13374392 13374419 -72321335 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr15 13376029 13376053 -72319701 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr15 13377767 13377806 -72317948 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr15 13377928 13377950 -72317804 + AT_rich Low_complexity Low_complexity 1 22 0 275 246 71 40 chr15 13379191 13379228 -72316526 + MARNA DNA Mariner 127 161 -425 2197 62 13 52 chr15 13379228 13379534 -72316220 - AluY SINE Alu -17 294 1 275 246 71 40 chr15 13379534 13379622 -72316132 + MARNA DNA Mariner 161 256 -330 424 265 151 22 chr15 13380147 13380332 -72315422 - MIR SINE MIR 0 262 54 3334 154 62 34 chr15 13381160 13381759 -72313995 + MER39 LTR ERV1 1 623 -84 2083 146 34 17 chr15 13381759 13382116 -72313638 + THE1B LTR MaLR 1 363 -1 3334 154 62 34 chr15 13382116 13382199 -72313555 + MER39 LTR ERV1 623 702 -5 224 228 0 0 chr15 13382431 13382488 -72313266 + A-rich Low_complexity Low_complexity 3 59 0 233 313 46 30 chr15 13382623 13382754 -72313000 + L2 LINE L2 3179 3311 -2 266 246 0 15 chr15 13384189 13384254 -72311500 - MIR SINE MIR 0 262 199 21 0 0 0 chr15 13385101 13385122 -72310632 + AT_rich Low_complexity Low_complexity 1 21 0 834 326 78 49 chr15 13385899 13386607 -72309147 + L2 LINE L2 2365 3093 -179 1012 192 25 20 chr15 13386677 13386897 -72308857 + AluJo SINE Alu 85 305 0 1229 186 30 4 chr15 13387155 13387386 -72308368 + AluJo SINE Alu 67 303 -9 364 289 96 0 chr15 13387770 13387926 -72307828 + LTR33A LTR ERVL 226 396 -127 1955 143 0 0 chr15 13389441 13389721 -72306033 + AluSx SINE Alu 5 284 -28 24 53 0 0 chr15 13389965 13390003 -72305751 + AT_rich Low_complexity Low_complexity 1 38 0 2167 94 4 0 chr15 13390027 13390303 -72305451 + AluSp SINE Alu 17 293 -20 396 0 0 0 chr15 13390352 13390396 -72305358 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr15 13390395 13390420 -72305334 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 311 0 0 25 chr15 13391379 13391419 -72304335 + (CA)n Simple_repeat Simple_repeat 2 40 0 2228 100 0 0 chr15 13392476 13392783 -72302971 + AluSg SINE Alu 1 307 0 189 268 0 0 chr15 13392877 13392918 -72302836 + MIR SINE MIR 108 148 -60 256 248 149 41 chr15 13392953 13393074 -72302680 - MIR SINE MIR -124 138 5 572 169 71 49 chr15 13393139 13393322 -72302432 - MER53 DNA DNA -2 187 1 278 298 106 0 chr15 13393417 13393521 -72302233 - MIR3 SINE MIR -9 199 85 2513 56 0 0 chr15 13393525 13393831 -72301923 - AluY SINE Alu -4 307 2 192 345 0 0 chr15 13394036 13394091 -72301663 + L2 LINE L2 3249 3303 -10 2043 121 10 0 chr15 13394441 13394731 -72301023 - AluSx SINE Alu -19 293 1 395 207 95 113 chr15 13395303 13395525 -72300229 - LTR16B LTR ERVL -2 462 245 26 0 0 0 chr15 13395638 13395664 -72300090 + AT_rich Low_complexity Low_complexity 1 26 0 1356 194 35 7 chr15 13395937 13396220 -72299534 + MLT1A1 LTR MaLR 72 362 -3 1428 218 65 56 chr15 13396234 13396756 -72298998 + L1ME3A LINE L1 5568 6094 -76 21 36 0 0 chr15 13396915 13396943 -72298811 + AT_rich Low_complexity Low_complexity 1 28 0 1096 219 23 0 chr15 13396977 13397196 -72298558 - 7SLRNA srpRNA srpRNA -96 224 1 329 245 119 95 chr15 13397219 13397247 -72298507 - L1MC4 LINE L1 -140 7902 7876 225 0 0 0 chr15 13397247 13397272 -72298482 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2260 45 7 21 chr15 13397276 13397567 -72298187 - AluY SINE Alu -24 287 1 329 245 119 95 chr15 13397567 13397827 -72297927 - L1MC4 LINE L1 -168 7874 7602 475 248 34 0 chr15 13397865 13397982 -72297772 + L2 LINE L2 3193 3313 0 2362 104 0 0 chr15 13398012 13398321 -72297433 - AluSg SINE Alu 0 310 2 374 295 93 54 chr15 13399453 13399711 -72296043 + L1ME4a LINE L1 5791 6058 -63 190 321 0 0 chr15 13399832 13399888 -72295866 + MIR SINE MIR 106 161 -101 22 35 0 0 chr15 13399957 13399986 -72295768 + AT_rich Low_complexity Low_complexity 1 29 0 2377 100 0 0 chr15 13400108 13400409 -72295345 - AluSx SINE Alu -11 301 1 2256 94 34 0 chr15 13401045 13401343 -72294411 + AluSx SINE Alu 1 308 -4 948 252 110 0 chr15 13401589 13401879 -72293875 + MER5C DNA MER1_type 1 322 -2 329 316 13 33 chr15 13401926 13402078 -72293676 + MIR SINE MIR 112 260 -2 221 83 28 0 chr15 13402743 13402779 -72292975 + (CAATA)n Simple_repeat Simple_repeat 4 40 0 647 286 67 13 chr15 13402780 13403004 -72292750 + MIR SINE MIR 21 256 -6 222 324 141 22 chr15 13403213 13403398 -72292356 + L2 LINE L2 2836 3042 -230 975 76 0 0 chr15 13404154 13404285 -72291469 + L1PA8A LINE L1 5974 6104 -27 189 0 0 0 chr15 13404285 13404306 -72291448 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 634 277 52 56 chr15 13404798 13405029 -72290725 + MIR SINE MIR 13 242 -20 238 125 25 0 chr15 13405066 13405106 -72290648 + HSMAR1 DNA Mariner 1247 1287 0 1725 167 0 4 chr15 13405190 13405471 -72290283 + AluJo SINE Alu 3 282 -30 198 319 198 0 chr15 13405516 13405607 -72290147 - MIR SINE MIR -122 140 32 215 170 64 0 chr15 13405826 13405873 -72289881 - L2 LINE L2 -2 3311 3262 2604 20 7 0 chr15 13405933 13406228 -72289526 - AluY SINE Alu -14 297 1 206 276 86 0 chr15 13407811 13407869 -72287885 - MIR3 SINE MIR -30 178 116 221 236 0 36 chr15 13408466 13408521 -72287233 + T-rich Low_complexity Low_complexity 3 55 0 889 112 0 22 chr15 13408769 13408903 -72286851 + AluJo/FLAM SINE Alu 1 131 -171 324 162 0 108 chr15 13408903 13408977 -72286777 + AluSc SINE Alu 132 197 -102 * 4125 179 63 20 chr15 13408970 13409868 -72285886 - Charlie1a DNA MER1_type -517 938 2 395 295 118 67 chr15 13410077 13410511 -72285243 - L1 LINE L1 -747 5399 4944 276 308 19 19 chr15 13410604 13410711 -72285043 + MIR3 SINE MIR 97 203 -5 2203 119 73 24 chr15 13410735 13410908 -72284846 - MER6 DNA MER2_type 0 865 702 2377 88 0 0 chr15 13410908 13411215 -72284539 + AluY SINE Alu 1 307 -4 2203 119 73 24 chr15 13411215 13411411 -72284343 - MER6 DNA MER2_type -163 702 478 1159 194 0 9 chr15 13411411 13411628 -72284126 + AluJo SINE Alu 87 301 -11 698 125 18 0 chr15 13411629 13411741 -72284013 - MER6 DNA MER2_type -380 485 372 231 114 0 0 chr15 13411741 13411776 -72283978 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 22 35 0 0 chr15 13412819 13412848 -72282906 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 13412899 13412920 -72282834 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 13414826 13414849 -72280905 + AT_rich Low_complexity Low_complexity 1 23 0 296 368 18 18 chr15 13417571 13417685 -72278069 - L2 LINE L2 0 3272 3159 612 266 117 5 chr15 13417940 13418122 -72277632 + MIR SINE MIR 48 250 -12 344 327 0 0 chr15 13418122 13418223 -72277531 + MER5B DNA MER1_type 3 103 -75 33 56 0 0 chr15 13418260 13418314 -72277440 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr15 13419845 13419867 -72275887 + AT_rich Low_complexity Low_complexity 1 22 0 264 313 0 0 chr15 13420724 13420791 -72274963 + CT-rich Low_complexity Low_complexity 6 72 0 211 296 0 0 chr15 13421051 13421105 -72274649 + L2 LINE L2 3006 3059 -254 1258 276 75 41 chr15 13421292 13421846 -72273908 + MLT1F1 LTR MaLR 1 567 0 193 82 41 41 chr15 13422706 13422755 -72272999 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr15 13423713 13423759 -72271995 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr15 13424141 13424170 -72271584 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 13424205 13424227 -72271527 + AT_rich Low_complexity Low_complexity 1 22 0 205 369 18 0 chr15 13424402 13424513 -72271241 + L2 LINE L2 2249 2361 -953 2127 48 0 0 chr15 13424531 13424783 -72270971 - AluY SINE Alu -26 285 34 960 216 5 0 chr15 13424931 13425116 -72270638 - MER5A DNA MER1_type 0 189 4 2339 81 16 3 chr15 13425904 13426211 -72269543 + AluSp SINE Alu 1 311 -2 289 287 13 33 chr15 13427080 13427230 -72268524 + CT-rich Low_complexity Low_complexity 2 148 0 6951 142 31 6 chr15 13427605 13428783 -72266971 - Tigger3b DNA MER2_type 0 1231 25 21 0 0 0 chr15 13428818 13428839 -72266915 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 3 chr15 13428845 13429144 -72266610 - AluSx SINE Alu -11 301 2 252 350 60 17 chr15 13429454 13429571 -72266183 - MIR SINE MIR -66 142 21 1981 169 19 22 chr15 13429874 13430008 -72265746 + MLT1A1 LTR MaLR 1 134 -231 2809 80 3 11 chr15 13430008 13430385 -72265369 + THE1C LTR MaLR 2 375 0 1981 169 19 22 chr15 13430385 13430616 -72265138 + MLT1A1 LTR MaLR 134 365 0 316 218 82 9 chr15 13430818 13430928 -72264826 + L1MC4 LINE L1 7894 8011 -31 205 305 17 0 chr15 13431436 13431495 -72264259 + L2 LINE L2 3211 3270 -2 2230 96 7 0 chr15 13431871 13432164 -72263590 + AluSg SINE Alu 1 295 -15 899 164 7 13 chr15 13432176 13432328 -72263426 + FRAM SINE Alu 8 158 -18 313 259 254 9 chr15 13432503 13432698 -72263056 + MIR SINE MIR 8 259 -3 294 73 0 0 chr15 13433601 13433642 -72262112 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 593 347 47 11 chr15 13434011 13434285 -72261469 + L3 LINE CR1 475 758 -819 231 88 0 0 chr15 13434307 13434341 -72261413 + (CA)n Simple_repeat Simple_repeat 1 34 0 38 39 0 0 chr15 13434631 13434683 -72261071 + AT_rich Low_complexity Low_complexity 1 52 0 254 262 0 0 chr15 13434807 13434868 -72260886 - MIR SINE MIR -66 196 136 219 69 0 0 chr15 13435051 13435080 -72260674 + (CA)n Simple_repeat Simple_repeat 2 30 0 2057 140 13 0 chr15 13435149 13435457 -72260297 + AluJo SINE Alu 1 312 0 306 333 188 27 chr15 13435465 13435726 -72260028 + L3 LINE CR1 1264 1566 -11 181 336 65 28 chr15 13436401 13436508 -72259246 - L2 LINE L2 -5 3267 3157 249 333 34 8 chr15 13436781 13436898 -72258856 - MIR3 SINE MIR -13 195 76 204 254 70 79 chr15 13437450 13437564 -72258190 - MIR SINE MIR -45 217 105 200 196 54 0 chr15 13438124 13438180 -72257574 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 772 207 0 27 chr15 13438512 13438662 -72257092 - FRAM SINE Alu -18 158 13 21 36 0 0 chr15 13438672 13438700 -72257054 + AT_rich Low_complexity Low_complexity 1 28 0 1935 129 7 34 chr15 13438711 13438862 -72256892 - AluSx SINE Alu -26 286 145 2832 7 0 0 chr15 13438862 13439167 -72256587 - AluY SINE Alu -6 305 1 1935 129 7 34 chr15 13439167 13439309 -72256445 - AluSx SINE Alu -167 145 1 769 144 32 0 chr15 13439329 13439454 -72256300 - FLAM_C SINE Alu -4 129 1 399 363 29 37 chr15 13439781 13440026 -72255728 + MIR SINE MIR 20 262 0 377 276 81 16 chr15 13440367 13440490 -72255264 - MIR SINE MIR -111 151 21 447 261 42 7 chr15 13440508 13440624 -72255130 + MIR SINE MIR 14 130 -78 2582 34 0 43 chr15 13440687 13441010 -72254744 - AluY SINE Alu 0 311 3 754 269 96 34 chr15 13441104 13441427 -72254327 + LTR16C LTR ERVL 149 491 0 457 284 133 15 chr15 13441940 13442204 -72253550 - L1ME4a LINE L1 0 6121 5827 291 303 162 0 chr15 13442298 13442440 -72253314 - L1ME4a LINE L1 -437 5684 5520 361 239 123 8 chr15 13444407 13444537 -72251217 + MIR SINE MIR 3 147 -115 406 318 54 50 chr15 13444610 13444849 -72250905 - MIR SINE MIR -12 250 11 195 388 11 56 chr15 13444924 13445102 -72250652 - MIR SINE MIR -86 176 7 14110 199 25 17 chr15 13445625 13448853 -72246901 + L1PB3 LINE L1 253 3583 -2628 2156 125 3 0 chr15 13448853 13449142 -72246612 + AluSg SINE Alu 1 290 -20 14110 199 25 17 chr15 13449142 13451789 -72243965 + L1PB3 LINE L1 3583 6209 -2 25 51 0 0 chr15 13451794 13451833 -72243921 + AT_rich Low_complexity Low_complexity 1 39 0 410 314 30 18 chr15 13451926 13452095 -72243659 + MER5B DNA MER1_type 8 178 0 2614 45 0 3 chr15 13452320 13452632 -72243122 - AluY SINE Alu 0 311 1 2074 135 0 0 chr15 13454957 13455253 -72240501 + AluSx SINE Alu 1 296 -16 345 100 0 0 chr15 13455412 13455462 -72240292 + (TG)n Simple_repeat Simple_repeat 1 50 0 713 170 27 112 chr15 13456673 13456896 -72238858 + MLT1D LTR MaLR 1 204 -301 220 136 51 0 chr15 13456937 13456996 -72238758 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2306 136 53 5 chr15 13458043 13458440 -72237314 + L1PA16 LINE L1 5723 6138 -28 378 245 108 0 chr15 13459752 13459854 -72235900 + MER91A DNA MER1_type 57 169 -27 1022 176 73 30 chr15 13459992 13460225 -72235529 + MIR SINE MIR 18 260 -2 22 35 0 0 chr15 13460257 13460286 -72235468 + AT_rich Low_complexity Low_complexity 1 29 0 299 248 219 19 chr15 13461446 13461551 -72234203 + MIR SINE MIR 23 148 -60 377 293 190 57 chr15 13461561 13462056 -72233698 - L2 LINE L2 -15 3298 2742 1505 174 48 35 chr15 13462064 13462437 -72233317 - Charlie5 DNA MER1_type 0 2620 2243 691 164 8 0 chr15 13462444 13462566 -72233188 - Charlie5 DNA MER1_type -2489 123 1 306 278 105 80 chr15 13462572 13462692 -72233062 - L2 LINE L2 -571 2743 2628 1586 199 36 9 chr15 13462692 13463024 -72232730 - MER58B DNA MER1_type 0 341 1 306 278 105 80 chr15 13463024 13463216 -72232538 - L2 LINE L2 -686 2628 2423 218 259 37 0 chr15 13463206 13463260 -72232494 + MIR3 SINE MIR 151 206 -2 * 377 278 94 63 chr15 13465491 13465714 -72230040 - MIR SINE MIR -31 231 2 288 23 0 23 chr15 13466762 13466806 -72228948 - L1PA5 LINE L1 0 6154 6112 27 0 0 0 chr15 13467509 13467536 -72228218 + AT_rich Low_complexity Low_complexity 1 27 0 242 281 31 10 chr15 13467621 13467717 -72228037 - L1ME4a LINE L1 -43 6078 5981 24 0 0 0 chr15 13468214 13468238 -72227516 + AT_rich Low_complexity Low_complexity 1 24 0 301 286 141 72 chr15 13468407 13468669 -72227085 - HAL1 LINE L1 -707 1800 1521 2052 113 10 13 chr15 13468707 13469009 -72226745 - AluSq SINE Alu -1 312 12 180 125 0 0 chr15 13469033 13469065 -72226689 + (T)n Simple_repeat Simple_repeat 1 32 0 316 277 100 70 chr15 13469075 13469375 -72226379 - L1MEd LINE L1 -1206 1301 993 291 374 17 4 chr15 13469377 13469476 -72226278 - HAL1 LINE L1 -1465 1042 946 1780 183 0 7 chr15 13469476 13469777 -72225977 + AluJb SINE Alu 1 299 -13 291 374 17 4 chr15 13469777 13469907 -72225847 - HAL1 LINE L1 -1561 946 810 191 320 78 58 chr15 13470331 13470434 -72225320 + MIR SINE MIR 35 139 -123 842 166 12 12 chr15 13471032 13471201 -72224553 - L1MB8 LINE L1 -1 6177 6009 2146 193 2 2 chr15 13471203 13471622 -72224132 - L1MB8 LINE L1 -475 5709 5291 269 333 175 0 chr15 13476036 13476150 -72219604 - L2 LINE L2 0 3272 3139 192 328 16 0 chr15 13476226 13476290 -72219464 - MIR SINE MIR -23 239 175 23 0 0 0 chr15 13478379 13478402 -72217352 + AT_rich Low_complexity Low_complexity 1 23 0 2303 64 28 0 chr15 13478875 13479158 -72216596 + AluY SINE Alu 1 291 -20 525 296 102 22 chr15 13480806 13481032 -72214722 + MIR SINE MIR 17 260 -2 185 360 9 27 chr15 13482604 13482715 -72213039 + MIR SINE MIR 75 183 -79 29 47 0 0 chr15 13535744 13535787 -72159967 + AT_rich Low_complexity Low_complexity 1 43 0 360 354 29 11 chr15 13536004 13536179 -72159575 + LTR67 LTR ERVL 380 557 0 311 293 182 0 chr15 13536225 13536324 -72159430 + MIR SINE MIR 13 129 -133 2449 70 0 13 chr15 13537364 13537664 -72158090 + AluY SINE Alu 1 296 -15 500 114 0 0 chr15 13538167 13538237 -72157517 - MLT1A2 LTR MaLR 0 374 305 39 88 0 0 chr15 13538436 13538538 -72157216 + AT_rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr15 13540308 13540330 -72155424 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 13540403 13540424 -72155330 + AT_rich Low_complexity Low_complexity 1 21 0 1486 235 88 33 chr15 13540424 13540879 -72154875 - L1ME1 LINE L1 -17 6149 5670 514 219 30 48 chr15 13540893 13541092 -72154662 + MLT1D-int LTR MaLR 1233 1370 -1 1878 212 30 38 chr15 13541094 13541598 -72154156 + MLT1D LTR MaLR 2 501 -4 277 311 87 0 chr15 13542757 13542860 -72152894 - MIR3 SINE MIR -5 203 92 2171 164 37 39 chr15 13542981 13543413 -72152341 - MSTB1 LTR MaLR 0 432 2 3274 152 29 79 chr15 13543610 13544214 -72151540 - L1MB7 LINE L1 0 6184 5620 1802 162 0 14 chr15 13544214 13544498 -72151256 - AluJo SINE Alu -27 285 6 3274 152 29 79 chr15 13544498 13544611 -72151143 - L1MB7 LINE L1 -564 5620 5503 1161 231 106 3 chr15 13544628 13544948 -72150806 + LTR48 LTR ERV1 106 458 -329 456 191 95 83 chr15 13544946 13545114 -72150640 + LTR48 LTR ERV1 618 787 0 * 201 250 0 39 chr15 13545408 13545460 -72150294 - MIR3 SINE MIR -21 187 138 314 255 96 82 chr15 13545930 13546122 -72149632 - L1M4 LINE L1 -1426 4720 4532 1869 154 24 3 chr15 13546122 13546420 -72149334 - AluSx SINE Alu -8 304 1 314 255 96 82 chr15 13546420 13546517 -72149237 - L1M4 LINE L1 -1614 4532 4438 1912 129 20 3 chr15 13546517 13546811 -72148943 + AluSc SINE Alu 1 299 -10 314 255 96 82 chr15 13546811 13547081 -72148673 - L1M4 LINE L1 -1708 4438 4152 343 303 91 24 chr15 13547182 13547347 -72148407 - L1M4 LINE L1 -3171 2975 2800 1349 217 0 8 chr15 13547696 13547936 -72147818 - MER8 DNA MER2_type 0 239 2 604 301 82 27 chr15 13547969 13548484 -72147270 + L1ME3A LINE L1 800 1342 -4863 2416 87 0 0 chr15 13548639 13548948 -72146806 + AluY SINE Alu 1 309 -2 265 332 39 11 chr15 13549127 13549437 -72146317 + L1ME3A LINE L1 1968 2248 -3967 * 1094 252 133 2 chr15 13549420 13549840 -72145914 + L1ME3A LINE L1 4818 5292 -923 1018 260 138 10 chr15 13549843 13550250 -72145504 + L1ME3A LINE L1 5569 6027 -204 317 271 165 30 chr15 13550325 13550458 -72145296 + L1ME3A LINE L1 6057 6207 -32 21 0 0 0 chr15 13550467 13550488 -72145266 + AT_rich Low_complexity Low_complexity 1 21 0 182 220 40 20 chr15 13551102 13551152 -72144602 + MIR SINE MIR 79 129 -133 600 275 39 11 chr15 13551284 13551462 -72144292 + MIR SINE MIR 7 189 -73 1158 202 35 76 chr15 13551569 13551692 -72144062 - MER2 DNA MER2_type -7 338 212 1987 88 66 0 chr15 13551692 13551964 -72143790 + AluSx SINE Alu 1 290 -22 1158 202 35 76 chr15 13551964 13552182 -72143572 - MER2 DNA MER2_type -133 212 11 561 250 56 28 chr15 13553606 13553786 -72141968 - MLT1L LTR MaLR -72 543 359 342 0 0 0 chr15 13557863 13557901 -72137853 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr15 13558281 13558302 -72137452 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr15 13558783 13558818 -72136936 + (CA)n Simple_repeat Simple_repeat 2 36 0 1802 133 33 36 chr15 13559392 13559693 -72136061 - AluJo SINE Alu -12 300 1 22 35 0 0 chr15 13560135 13560164 -72135590 + AT_rich Low_complexity Low_complexity 1 29 0 2548 50 0 0 chr15 13560208 13560507 -72135247 - AluY SINE Alu -12 299 1 549 275 149 34 chr15 13560518 13560796 -72134958 - L1ME4a LINE L1 -70 6051 5806 2417 80 3 0 chr15 13560796 13561098 -72134656 - AluY SINE Alu -8 303 1 549 275 149 34 chr15 13561098 13561262 -72134492 - L1ME4a LINE L1 -315 5806 5558 1912 154 0 0 chr15 13562771 13563111 -72132643 - AluSx SINE Alu 0 340 1 1948 122 0 0 chr15 13563188 13563451 -72132303 + AluSx SINE Alu 40 302 -10 545 273 203 25 chr15 13564422 13564708 -72131046 + L2 LINE L2 2976 3312 -1 23 0 0 0 chr15 13565331 13565354 -72130400 + AT_rich Low_complexity Low_complexity 1 23 0 201 291 97 39 chr15 13565389 13565492 -72130262 - L2 LINE L2 -21 3292 3184 247 349 14 57 chr15 13565648 13565857 -72129897 - L2 LINE L2 -438 2876 2677 21 0 0 0 chr15 13567208 13567229 -72128525 + AT_rich Low_complexity Low_complexity 1 21 0 2323 100 0 6 chr15 13567682 13567993 -72127761 - AluSc SINE Alu 0 309 1 212 147 0 0 chr15 13570686 13570720 -72125034 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr15 13571149 13571170 -72124584 + AT_rich Low_complexity Low_complexity 1 21 0 277 171 14 14 chr15 13572286 13572356 -72123398 + T-rich Low_complexity Low_complexity 4 73 0 236 267 144 22 chr15 13575053 13575143 -72120611 - L2 LINE L2 -25 3247 3147 1103 122 113 50 chr15 13575167 13575388 -72120366 - MER46A DNA MER2_type 0 236 2 201 237 17 17 chr15 13575647 13575706 -72120048 - L2 LINE L2 -553 2761 2703 1648 94 31 20 chr15 13575753 13576008 -72119746 + THE1C LTR MaLR 1 258 -117 2451 55 3 0 chr15 13576923 13577214 -72118540 - AluY SINE Alu -19 292 1 21 0 0 0 chr15 13578191 13578212 -72117542 + AT_rich Low_complexity Low_complexity 1 21 0 775 269 123 0 chr15 13579212 13579439 -72116315 - MIR SINE MIR 0 262 8 306 260 115 10 chr15 13580752 13580856 -72114898 - MIR SINE MIR -96 166 52 226 309 12 0 chr15 13581028 13581109 -72114645 - L3b LINE CR1 -176 1407 1326 415 307 125 21 chr15 13581119 13581311 -72114443 + MIR SINE MIR 50 261 -1 2305 169 133 21 chr15 13581787 13582319 -72113435 - L1MD3 LINE L1 0 7995 7404 410 247 0 32 chr15 13582319 13582412 -72113342 - MLT1F1 LTR MaLR -442 125 36 257 202 173 0 chr15 13582419 13582523 -72113231 - L1MD3 LINE L1 -885 7110 6989 731 254 32 32 chr15 13584721 13584938 -72110816 - L2 LINE L2 -5 3308 3092 456 157 78 52 chr15 13589630 13589745 -72106009 + MER106B DNA MER1_type 939 1056 -3 194 264 65 83 chr15 13589779 13590038 -72105716 - L3 LINE CR1 -214 1363 1071 672 257 53 19 chr15 13591715 13591921 -72103833 - MIR SINE MIR -48 214 2 424 320 170 17 chr15 13592028 13592328 -72103426 + MLT1G1 LTR MaLR 175 520 -75 249 200 40 27 chr15 13593193 13593268 -72102486 + L1MEd LINE L1 495 570 -5549 545 298 83 25 chr15 13593695 13594322 -72101432 + L1MEd LINE L1 993 1748 -742 1778 201 87 69 chr15 13594401 13594437 -72101317 - MLT2B1 LTR ERVL -8 512 478 249 33 0 0 chr15 13594437 13594467 -72101287 + (TG)n Simple_repeat Simple_repeat 2 31 0 1778 201 87 69 chr15 13594467 13594860 -72100894 - MLT2B1 LTR ERVL -42 478 70 1525 183 42 23 chr15 13594860 13595166 -72100588 + AluJb SINE Alu 1 312 0 1778 201 87 69 chr15 13595166 13595228 -72100526 - MLT2B1 LTR ERVL -450 70 11 19745 22 2 2 chr15 13595520 13597876 -72097878 - L1PA3 LINE L1 -1067 5079 2724 7649 25 1 0 chr15 13597876 13598941 -72096813 + L1PA3 LINE L1 5090 6155 0 952 96 7 22 chr15 13598966 13599101 -72096653 + AluJb SINE Alu 1 133 -179 615 173 32 12 chr15 13599118 13599351 -72096403 + GA-rich Low_complexity Low_complexity 1 237 0 231 88 0 0 chr15 13599393 13599427 -72096327 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 227 225 81 50 chr15 13599594 13599754 -72096000 + L1MEd LINE L1 2132 2296 -3833 548 255 235 16 chr15 13599969 13600655 -72095099 + L1MEd LINE L1 2438 3273 -2856 2438 67 0 0 chr15 13602636 13602936 -72092818 - AluY SINE Alu -11 300 1 21 0 0 0 chr15 13607573 13607594 -72088160 + AT_rich Low_complexity Low_complexity 1 21 0 353 291 80 94 chr15 13607832 13607933 -72087821 + MIR SINE MIR 52 153 -109 2009 144 10 0 chr15 13607933 13608224 -72087530 + AluSq SINE Alu 1 294 -19 353 291 80 94 chr15 13608224 13608335 -72087419 + MIR SINE MIR 153 261 -1 504 209 225 11 chr15 13608385 13608571 -72087183 + MIR SINE MIR 25 251 -11 29 28 0 0 chr15 13608937 13608973 -72086781 + AT_rich Low_complexity Low_complexity 1 36 0 395 151 14 14 chr15 13609000 13609073 -72086681 - AluJ/FLAM SINE Alu -228 74 2 21 0 0 0 chr15 13609172 13609193 -72086561 + AT_rich Low_complexity Low_complexity 1 21 0 1809 149 0 55 chr15 13609199 13609508 -72086246 + AluJo SINE Alu 2 293 -19 21 0 0 0 chr15 13609807 13609828 -72085926 + AT_rich Low_complexity Low_complexity 1 21 0 227 323 181 38 chr15 13612362 13612495 -72083259 - L2 LINE L2 0 3272 3121 201 313 116 18 chr15 13612541 13612653 -72083101 - L2 LINE L2 0 3272 3150 1320 196 32 12 chr15 13613188 13613438 -72082316 + AluJo SINE Alu 28 282 -30 744 71 0 0 chr15 13613446 13613545 -72082209 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 630 249 62 85 chr15 13614958 13615263 -72080491 - MLT1K LTR MaLR -11 577 280 1835 119 7 63 chr15 13615287 13615589 -72080165 + AluJo SINE Alu 1 285 -27 391 120 0 63 chr15 13615626 13615801 -72079953 + (TA)n Simple_repeat Simple_repeat 2 165 0 188 309 0 0 chr15 13616266 13616308 -72079446 - L3b LINE CR1 -12 1571 1530 232 246 62 0 chr15 13617897 13617962 -72077792 + MIR3 SINE MIR 100 168 -40 2206 132 0 0 chr15 13618699 13619002 -72076752 + AluSx SINE Alu 1 303 -9 221 205 0 13 chr15 13619643 13619721 -72076033 + GA-rich Low_complexity Low_complexity 1 77 0 216 0 0 0 chr15 13620827 13620851 -72074903 + (T)n Simple_repeat Simple_repeat 1 24 0 27 62 0 0 chr15 13621705 13621753 -72074001 + AT_rich Low_complexity Low_complexity 1 48 0 2192 119 0 0 chr15 13624629 13624932 -72070822 - AluSg SINE Alu -7 303 1 351 264 151 19 chr15 13625864 13626023 -72069731 + MIR SINE MIR 49 228 -34 266 354 114 43 chr15 13626128 13626382 -72069372 + L2 LINE L2 2997 3268 -4 1738 297 103 23 chr15 13626811 13627430 -72068324 - MER115 DNA AcHobo -23 670 2 193 285 127 57 chr15 13628457 13628615 -72067139 + L3b LINE CR1 1164 1332 -251 320 274 111 17 chr15 13628903 13629020 -72066734 - MER5B DNA MER1_type -1 177 50 2486 243 48 54 chr15 13629538 13630451 -72065303 - L1ME1 LINE L1 -5 6230 5323 6649 221 63 34 chr15 13630452 13631321 -72064433 - L1ME1 LINE L1 -1200 5015 4172 1711 174 11 11 chr15 13631321 13631608 -72064146 + AluJo SINE Alu 12 298 -14 6649 221 63 34 chr15 13631608 13632603 -72063151 - L1ME1 LINE L1 -2043 4172 3207 316 0 45 0 chr15 13632603 13632647 -72063107 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6649 221 63 34 chr15 13632647 13632659 -72063095 - L1ME1 LINE L1 -3008 3207 3197 6945 63 15 0 chr15 13632659 13633667 -72062087 - L1PA6 LINE L1 -13 6141 5130 6649 221 63 34 chr15 13633667 13634082 -72061672 - L1ME1 LINE L1 -3018 3197 2657 977 281 45 72 chr15 13634066 13634535 -72061219 - L1ME1 LINE L1 -5940 456 1 * 324 0 0 0 chr15 13634672 13634708 -72061046 + (TC)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr15 13635324 13635355 -72060399 + (TG)n Simple_repeat Simple_repeat 2 32 0 810 229 6 0 chr15 13635927 13636097 -72059657 - FRAM SINE Alu -5 171 1 679 270 38 11 chr15 13636309 13636494 -72059260 - MIR SINE MIR 0 262 73 413 324 77 45 chr15 13636483 13636730 -72059024 - L2 LINE L2 -553 2761 2507 * 22 0 0 0 chr15 13637746 13637768 -72057986 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr15 13639707 13639730 -72056024 + (A)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr15 13640909 13640936 -72054818 + (T)n Simple_repeat Simple_repeat 1 27 0 1989 138 0 7 chr15 13641046 13641342 -72054412 - AluSc SINE Alu -15 294 1 275 217 53 121 chr15 13644623 13644978 -72050776 + L1MC5 LINE L1 7452 7782 -179 21 0 0 0 chr15 13645134 13645155 -72050599 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 13646760 13646786 -72048968 + AT_rich Low_complexity Low_complexity 1 26 0 2409 86 0 3 chr15 13649253 13649556 -72046198 + AluSx SINE Alu 1 302 -10 1517 285 98 4 chr15 13650278 13650791 -72044963 + L2 LINE L2 1935 2495 -819 894 255 112 25 chr15 13650794 13651281 -72044473 + L2 LINE L2 2745 3290 -23 1307 215 3 44 chr15 13651479 13651814 -72043940 + AluJo SINE Alu 1 323 0 427 216 10 0 chr15 13652473 13652570 -72043184 - MER103 DNA DNA -68 98 1 319 307 106 17 chr15 13652796 13652975 -72042779 - MER102b DNA MER1_type -23 318 124 2326 94 0 0 chr15 13652975 13653273 -72042481 + AluSp SINE Alu 1 298 -15 1119 163 0 0 chr15 13653298 13653470 -72042284 - FRAM SINE Alu -5 171 1 2021 153 10 47 chr15 13653893 13654278 -72041476 - MLT1B LTR MaLR -5 385 15 205 311 93 43 chr15 13655090 13655251 -72040503 - L2 LINE L2 -1 3312 3144 272 329 180 0 chr15 13655486 13655647 -72040107 - L2 LINE L2 -467 2847 2658 1879 165 10 0 chr15 13655978 13656281 -72039473 + AluJb SINE Alu 1 306 -6 501 326 28 17 chr15 13656823 13657001 -72038753 - L2 LINE L2 -1 3312 3133 24 0 0 0 chr15 13657716 13657740 -72038014 + AT_rich Low_complexity Low_complexity 1 24 0 2254 108 0 0 chr15 13658052 13658347 -72037407 + AluSx SINE Alu 1 295 -17 261 0 0 0 chr15 13659038 13659067 -72036687 + (CA)n Simple_repeat Simple_repeat 1 29 0 1570 142 68 29 chr15 13659121 13659402 -72036352 - AluJb SINE Alu -5 307 16 199 248 144 96 chr15 13659900 13660025 -72035729 - MIR3 SINE MIR -7 201 71 369 287 176 37 chr15 13660380 13660596 -72035158 + MIR SINE MIR 2 247 -15 202 347 50 33 chr15 13661724 13661845 -72033909 - L3 LINE CR1 -1446 131 9 288 325 48 12 chr15 13662763 13662846 -72032908 - MIR SINE MIR -65 143 58 293 82 20 0 chr15 13663580 13663629 -72032125 + (TA)n Simple_repeat Simple_repeat 2 51 0 834 181 0 0 chr15 13663780 13663913 -72031841 + AluSq/x SINE Alu 1 133 -179 4442 66 12 13 chr15 13663928 13664530 -72031224 + L1PA10 LINE L1 5560 6160 -8 23 0 0 0 chr15 13665979 13666002 -72029752 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 13666935 13666955 -72028799 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr15 13668632 13668655 -72027099 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr15 13668962 13668985 -72026769 + AT_rich Low_complexity Low_complexity 1 23 0 3796 164 26 11 chr15 13669805 13670500 -72025254 + MER44D DNA MER2_type 1 705 0 327 185 0 0 chr15 13670778 13670832 -72024922 + MIR SINE MIR 93 146 -62 1920 147 118 11 chr15 13672001 13672383 -72023371 - MSTA LTR MaLR -5 423 1 348 299 101 19 chr15 13672386 13672593 -72023161 - L1ME4a LINE L1 -206 5915 5692 246 32 0 0 chr15 13673083 13673114 -72022640 + (TGG)n Simple_repeat Simple_repeat 1 31 0 433 273 30 20 chr15 13673114 13673312 -72022442 - L1ME4a LINE L1 -420 5701 5502 243 0 0 0 chr15 13674847 13674874 -72020880 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6892 32 6 0 chr15 13674874 13675736 -72020018 - L1PA5 LINE L1 -12 6142 5276 223 178 0 0 chr15 13676557 13676602 -72019152 + T-rich Low_complexity Low_complexity 1 45 0 1322 260 67 60 chr15 13677020 13677412 -72018342 + MLT1J LTR MaLR 12 409 -102 2239 128 0 0 chr15 13677412 13677724 -72018030 - AluSx SINE Alu 0 312 1 1322 260 67 60 chr15 13677724 13677827 -72017927 + MLT1J LTR MaLR 409 510 -1 21 57 0 0 chr15 13678001 13678036 -72017718 + AT_rich Low_complexity Low_complexity 1 35 0 5869 142 8 41 chr15 13678075 13679541 -72016213 - L1MA10 LINE L1 -3 6331 4915 244 324 72 36 chr15 13680606 13680745 -72015009 + MIR3 SINE MIR 21 164 -44 2605 158 15 24 chr15 13681542 13682010 -72013744 - MLT2C2 LTR ERVL 0 464 1 291 193 36 60 chr15 13682010 13682093 -72013661 - MIR SINE MIR -99 163 83 230 81 27 0 chr15 13682462 13682499 -72013255 + (TC)n Simple_repeat Simple_repeat 1 38 0 205 280 19 0 chr15 13682651 13682758 -72012996 + GA-rich Low_complexity Low_complexity 1 109 0 1911 135 3 3 chr15 13682810 13683117 -72012637 - AluSx SINE Alu 0 307 1 528 228 68 6 chr15 13683202 13683364 -72012390 + MER5B DNA MER1_type 1 172 -6 1326 43 0 0 chr15 13683572 13683733 -72012021 + L1PA7 LINE L1 5994 6154 0 411 217 151 0 chr15 13683781 13683887 -72011867 - MER5B DNA MER1_type -53 125 4 2187 93 3 3 chr15 13684025 13684315 -72011439 + AluSg SINE Alu 10 299 -11 826 265 45 19 chr15 13684521 13684834 -72010920 + MER46C DNA MER2_type 12 332 -6 960 195 19 10 chr15 13685668 13685873 -72009881 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr15 13686502 13686533 -72009221 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr15 13688247 13688276 -72007478 + (TATG)n Simple_repeat Simple_repeat 2 30 0 257 264 0 0 chr15 13689908 13689961 -72005793 - L2 LINE L2 -7 3306 3254 1639 179 28 0 chr15 13689993 13690278 -72005476 - AluJb SINE Alu -18 294 2 268 203 0 17 chr15 13691521 13691580 -72004174 - MER117 DNA MER1_type -106 91 34 209 325 64 69 chr15 13691822 13692010 -72003744 - MER5A DNA MER1_type 0 189 3 252 212 141 35 chr15 13692033 13692118 -72003636 + MIR SINE MIR 30 123 -139 419 267 180 7 chr15 13693070 13693220 -72002534 - MIR SINE MIR -56 206 31 464 325 32 37 chr15 13693671 13693859 -72001895 - MIR3 SINE MIR -5 203 17 348 279 98 8 chr15 13694176 13694298 -72001456 - L2 LINE L2 -1 3271 3139 223 159 0 23 chr15 13696608 13696652 -71999102 + L2 LINE L2 3210 3252 -20 200 162 14 54 chr15 13700208 13700282 -71995472 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 13700439 13700476 -71995278 + (TA)n Simple_repeat Simple_repeat 2 38 0 1525 156 4 0 chr15 13700476 13700714 -71995040 - AluSp SINE Alu -4 309 71 1579 141 28 4 chr15 13700866 13701115 -71994639 - AluJb SINE Alu -57 255 1 329 186 9 106 chr15 13702234 13702347 -71993407 - L2 LINE L2 -620 2694 2593 195 222 93 0 chr15 13703289 13703343 -71992411 + MIR SINE MIR 20 78 -184 1164 144 5 10 chr15 13703587 13703795 -71991959 - MLT1B LTR MaLR -183 207 1 387 308 86 0 chr15 13703855 13703972 -71991782 - MIR SINE MIR -124 138 12 2157 107 38 41 chr15 13704649 13705014 -71990740 + THE1B LTR MaLR 1 364 0 670 160 0 0 chr15 13705154 13705254 -71990500 - AluJ/FLAM SINE Alu -212 100 1 368 299 43 17 chr15 13705254 13705371 -71990383 + MIR SINE MIR 93 212 -50 398 294 6 69 chr15 13706080 13706240 -71989514 + MIR SINE MIR 57 206 -56 321 191 257 9 chr15 13706390 13706495 -71989259 + FLAM_C SINE Alu 2 132 -1 633 143 19 0 chr15 13706821 13706926 -71988828 - AluSx SINE Alu -15 294 188 1016 107 0 0 chr15 13706927 13707058 -71988696 - AluSx SINE Alu -181 132 2 225 226 0 0 chr15 13707060 13707113 -71988641 + L1ME2 LINE L1 6103 6155 -9 233 302 217 39 chr15 13708560 13708689 -71987065 + L2 LINE L2 3121 3272 0 200 162 14 54 chr15 13710437 13710511 -71985243 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 13710668 13710705 -71985049 + (TA)n Simple_repeat Simple_repeat 1 37 0 1913 80 4 0 chr15 13710705 13710943 -71984811 - AluSp SINE Alu -4 309 71 233 193 0 6 chr15 13710943 13710998 -71984756 - AluSp SINE Alu -262 38 1 23 33 0 0 chr15 13711243 13711273 -71984481 + AT_rich Low_complexity Low_complexity 1 30 0 396 59 0 0 chr15 13712733 13712741 -71983013 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 59 0 0 chr15 13712741 13712792 -71982962 + (TG)n Simple_repeat Simple_repeat 2 52 0 661 233 277 5 chr15 13713977 13714179 -71981575 + MIR SINE MIR 1 257 -5 246 146 18 73 chr15 13715051 13715106 -71980648 - L1M3 LINE L1 -386 5785 5734 3672 128 49 8 chr15 13715189 13715799 -71979955 + L1MA4A LINE L1 5662 6296 -7 830 225 18 0 chr15 13716078 13716247 -71979507 - FRAM SINE Alu -2 174 3 2276 102 0 0 chr15 13718080 13718373 -71977381 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr15 13718408 13718430 -71977324 + (A)n Simple_repeat Simple_repeat 1 22 0 210 188 471 0 chr15 13718515 13718600 -71977154 - L2 LINE L2 -4 3309 3185 369 62 0 0 chr15 13721242 13721290 -71974464 + (TG)n Simple_repeat Simple_repeat 1 48 0 289 176 137 0 chr15 13721391 13721442 -71974312 + MER30 DNA MER1_type 173 230 0 678 195 7 7 chr15 13721767 13721916 -71973838 + L1MA6 LINE L1 5998 6146 -154 1583 108 16 12 chr15 13722689 13722947 -71972807 + L1MA4A LINE L1 6040 6298 -5 1307 143 0 0 chr15 13723134 13723343 -71972411 - L1PA13 LINE L1 -20 6143 5935 365 287 77 21 chr15 13723542 13723685 -71972069 - L2 LINE L2 -8 3305 3155 201 308 90 87 chr15 13725242 13725563 -71970191 + L2 LINE L2 2898 3219 -53 322 271 70 16 chr15 13725635 13725764 -71969990 + MIR SINE MIR 16 150 -71 1347 173 60 69 chr15 13726275 13726334 -71969420 - L1MB2 LINE L1 -1 6170 6112 2369 50 4 4 chr15 13726334 13726614 -71969140 - AluY SINE Alu -15 296 17 1347 173 60 69 chr15 13726614 13726901 -71968853 - L1MB2 LINE L1 -59 6112 5827 399 287 216 6 chr15 13727126 13727307 -71968447 - Charlie8 DNA MER1_type -2138 279 61 606 339 164 17 chr15 13727318 13727787 -71967967 - L3 LINE CR1 -107 1470 933 822 241 0 91 chr15 13727794 13728014 -71967740 + MIR SINE MIR 40 239 -23 225 292 62 88 chr15 13728240 13728353 -71967401 - L2 LINE L2 -26 3246 3137 2121 120 13 7 chr15 13728461 13728761 -71966993 - AluSx SINE Alu -10 302 1 216 0 0 0 chr15 13733823 13733847 -71961907 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr15 13734009 13734031 -71961723 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 13737074 13737102 -71958652 + AT_rich Low_complexity Low_complexity 1 28 0 443 305 30 38 chr15 13737360 13737491 -71958263 + L2 LINE L2 3143 3272 0 183 302 19 0 chr15 13738404 13738457 -71957297 - L2 LINE L2 -13 3300 3247 246 62 0 0 chr15 13739159 13739191 -71956563 + (T)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr15 13739624 13739663 -71956091 + AT_rich Low_complexity Low_complexity 1 39 0 467 279 161 6 chr15 13742384 13742545 -71953209 - MIR3 SINE MIR -3 205 20 369 242 224 24 chr15 13743022 13743187 -71952567 + MIR SINE MIR 2 199 -63 22 0 0 0 chr15 13743250 13743272 -71952482 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr15 13744380 13744415 -71951339 + AT_rich Low_complexity Low_complexity 1 35 0 2188 119 0 0 chr15 13744459 13744753 -71951001 + AluSx SINE Alu 1 294 -18 367 218 97 32 chr15 13745979 13746103 -71949651 + MLT1L LTR MaLR 378 613 -2 612 288 74 26 chr15 13746710 13746939 -71948815 + MIR SINE MIR 20 259 -3 391 311 17 17 chr15 13746908 13747027 -71948727 - MIR SINE MIR -80 182 64 * 416 316 78 48 chr15 13747094 13747489 -71948265 + MLT1I LTR MaLR 1 407 -2 21 0 0 0 chr15 13747826 13747847 -71947907 + AT_rich Low_complexity Low_complexity 1 21 0 3875 206 29 15 chr15 13747986 13748958 -71946796 + L1ME1 LINE L1 5177 6162 -4 1117 270 49 80 chr15 13749633 13749986 -71945768 + MLT1L LTR MaLR 82 413 -202 1425 203 7 3 chr15 13749986 13750272 -71945482 + AluJb SINE Alu 1 287 -25 1117 270 49 80 chr15 13750272 13750469 -71945285 + MLT1L LTR MaLR 413 615 0 23 33 0 0 chr15 13750580 13750610 -71945144 + AT_rich Low_complexity Low_complexity 1 30 0 615 160 59 0 chr15 13750617 13750736 -71945018 + L1MC3 LINE L1 7660 7785 0 282 264 50 30 chr15 13750912 13751022 -71944732 - MIR SINE MIR -65 143 43 22 0 0 0 chr15 13751609 13751631 -71944123 + AT_rich Low_complexity Low_complexity 1 22 0 263 215 231 8 chr15 13751909 13752030 -71943724 + Charlie7 DNA MER1_type 1 148 -2464 1321 185 0 5 chr15 13752619 13752830 -71942924 + AluJo SINE Alu 1 210 -102 213 94 0 0 chr15 13752850 13752882 -71942872 + (A)n Simple_repeat Simple_repeat 1 32 0 1420 127 164 44 chr15 13752897 13752917 -71942837 - MER47A DNA MER2_type -2015 308 292 2141 98 25 0 chr15 13752917 13753202 -71942552 - AluSc SINE Alu -17 292 1 1420 127 164 44 chr15 13753202 13753456 -71942298 - MER47A DNA MER2_type -2031 292 1 896 258 62 82 chr15 13753505 13753908 -71941846 - L2 LINE L2 -704 2610 2216 2385 88 0 0 chr15 13754005 13754302 -71941452 - AluSg1 SINE Alu -12 297 1 1237 211 40 16 chr15 13757085 13757426 -71938328 - MLT1C LTR MaLR -3 387 46 1229 201 29 69 chr15 13757864 13758212 -71937542 - MER46C DNA MER2_type 0 338 5 3346 213 35 21 chr15 13758943 13760217 -71935537 + L1ME LINE L1 4475 5780 -386 2142 198 61 11 chr15 13760563 13761008 -71934746 - MLT1C LTR MaLR 0 467 1 397 261 63 42 chr15 13761134 13761276 -71934478 - L2 LINE L2 0 3313 3169 223 253 11 92 chr15 13762313 13762400 -71933354 - L2 LINE L2 -984 2330 2251 947 139 186 26 chr15 13762580 13762774 -71932980 + AluJo SINE Alu 76 300 -12 825 266 91 33 chr15 13763119 13763450 -71932304 - MARNA DNA Mariner -9 577 228 402 153 117 34 chr15 13764122 13764366 -71931388 + AluJo SINE Alu 3 312 0 184 298 0 0 chr15 13767721 13767768 -71927986 - L2 LINE L2 -219 3053 3007 2255 223 106 14 chr15 13768804 13769610 -71926144 - L1MC4 LINE L1 -1 8041 7162 1283 124 4 100 chr15 13769611 13769780 -71925974 - AluJb SINE Alu 0 312 128 2180 116 0 10 chr15 13769780 13770081 -71925673 - AluSx SINE Alu -14 298 1 1283 124 4 100 chr15 13770081 13770096 -71925658 - AluJb SINE Alu -184 128 113 207 0 0 0 chr15 13770096 13770119 -71925635 + (TG)n Simple_repeat Simple_repeat 2 24 0 1283 124 4 100 chr15 13770119 13770183 -71925571 - AluJb SINE Alu -199 113 87 918 159 137 70 chr15 13770187 13770502 -71925252 - L1MC4 LINE L1 -868 7174 6839 460 299 61 0 chr15 13770512 13770659 -71925095 - MIR SINE MIR -44 218 63 229 301 0 27 chr15 13771181 13771254 -71924500 + L2 LINE L2 969 1039 -2275 2305 98 7 0 chr15 13771438 13771734 -71924020 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr15 13775551 13775572 -71920182 + AT_rich Low_complexity Low_complexity 1 21 0 568 278 95 6 chr15 13775907 13776076 -71919678 + MIR SINE MIR 27 210 -52 209 167 0 48 chr15 13776495 13776537 -71919217 + L2 LINE L2 3192 3231 -82 478 225 132 8 chr15 13777138 13777267 -71918487 - MER5B DNA MER1_type -3 175 31 2193 137 23 8 chr15 13777928 13778315 -71917439 - MER57A LTR ERV1 -10 393 1 27 49 0 0 chr15 13778510 13778551 -71917203 + AT_rich Low_complexity Low_complexity 1 41 0 2547 41 3 22 chr15 13778792 13779109 -71916645 - AluY SINE Alu 0 311 1 832 289 14 10 chr15 13781248 13781539 -71914215 + L1ME1 LINE L1 399 690 -5706 * 3027 218 49 26 chr15 13781530 13781988 -71913766 + L1ME1 LINE L1 4745 5191 -1044 1667 191 10 7 chr15 13781988 13782282 -71913472 - AluJb SINE Alu -16 296 2 3027 218 49 26 chr15 13782282 13783276 -71912478 + L1ME1 LINE L1 5191 6230 -5 231 231 183 39 chr15 13783332 13783436 -71912318 + LTR33 LTR ERVL 6 124 -397 410 0 20 0 chr15 13783708 13783758 -71911996 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 243 258 25 50 chr15 13783928 13784048 -71911706 + L1ME3 LINE L1 2276 2392 -3823 1747 144 0 8 chr15 13784111 13784375 -71911379 + AluSq SINE Alu 1 262 -51 306 180 0 0 chr15 13784379 13784440 -71911314 + GA-rich Low_complexity Low_complexity 2 62 0 947 218 18 32 chr15 13784467 13784687 -71911067 + U3 snRNA snRNA 1 217 0 341 304 45 5 chr15 13784714 13784915 -71910839 + L1ME3 LINE L1 2487 2695 -3520 2274 255 24 16 chr15 13785082 13785345 -71910409 + L1ME3 LINE L1 5402 5662 -569 1573 162 86 19 chr15 13785345 13785660 -71910094 + MER44D DNA MER2_type 4 609 0 2274 255 24 16 chr15 13785660 13786071 -71909683 + L1ME3 LINE L1 5662 6081 -150 1628 142 10 26 chr15 13786116 13786419 -71909335 - L1MB1 LINE L1 -7 6161 5864 1982 144 0 0 chr15 13786419 13786753 -71909001 + L1MB1 LINE L1 5543 5876 -313 227 256 12 12 chr15 13786849 13786931 -71908823 + L1ME3 LINE L1 6149 6230 -1 425 314 51 4 chr15 13787076 13787312 -71908442 + L1MEc LINE L1 3702 3948 -2267 1575 290 62 27 chr15 13787317 13788309 -71907445 + L1MEc LINE L1 390 1415 -4981 297 120 0 0 chr15 13788380 13788430 -71907324 + L1ME1 LINE L1 5666 5715 -449 235 96 39 39 chr15 13788431 13788483 -71907271 + T-rich Low_complexity Low_complexity 4 55 0 721 98 32 0 chr15 13788501 13788624 -71907130 + C-rich Low_complexity Low_complexity 2 128 0 1662 194 3 13 chr15 13788624 13788938 -71906816 - AluJb SINE Alu -1 311 1 1336 213 84 29 chr15 13788938 13789388 -71906366 + L1ME1 LINE L1 5700 6331 -3 252 255 10 10 chr15 13789501 13789599 -71906155 + L1MEc LINE L1 4558 4655 -1560 554 152 0 22 chr15 13789966 13790058 -71905696 - AluJb SINE Alu -19 293 204 639 243 80 63 chr15 13792821 13792981 -71902773 - MIR SINE MIR 0 262 95 2211 84 42 0 chr15 13792981 13793267 -71902487 + AluSq SINE Alu 1 298 -15 639 243 80 63 chr15 13793267 13793345 -71902409 - MIR SINE MIR -167 95 20 872 324 108 38 chr15 13793852 13794594 -71901160 + L2 LINE L2 1167 1960 -1354 661 325 109 65 chr15 13794633 13795651 -71900103 - L2 LINE L2 -53 3219 2148 373 296 66 101 chr15 13795769 13796086 -71899668 + L2 LINE L2 2934 3239 -33 484 239 239 12 chr15 13796145 13796311 -71899443 - MIR3 SINE MIR 0 208 12 268 293 10 50 chr15 13796613 13796801 -71898953 - MIR SINE MIR 0 262 30 26 0 0 0 chr15 13797531 13797557 -71898197 + AT_rich Low_complexity Low_complexity 1 26 0 303 329 43 37 chr15 13798579 13798740 -71897014 + MIR3 SINE MIR 36 197 -11 195 162 0 0 chr15 13799916 13799953 -71895801 + A-rich Low_complexity Low_complexity 3 39 0 372 164 0 0 chr15 13801467 13801534 -71894220 + A-rich Low_complexity Low_complexity 1 67 0 186 73 73 0 chr15 13802061 13802102 -71893652 + GA-rich Low_complexity Low_complexity 1 44 0 345 62 0 0 chr15 13802885 13802933 -71892821 + (TG)n Simple_repeat Simple_repeat 1 48 0 197 176 0 39 chr15 13803799 13803850 -71891904 + GA-rich Low_complexity Low_complexity 6 54 0 260 243 14 0 chr15 13806209 13806279 -71889475 + (TA)n Simple_repeat Simple_repeat 2 72 0 396 0 0 0 chr15 13807331 13807375 -71888379 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr15 13807795 13807818 -71887936 + (TTA)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr15 13812558 13812596 -71883158 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr15 13814634 13814657 -71881097 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 13818806 13818828 -71876926 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 13822652 13822674 -71873080 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 13823623 13823649 -71872105 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr15 13825830 13825852 -71869902 + AT_rich Low_complexity Low_complexity 1 22 0 633 240 80 25 chr15 13826125 13826325 -71869429 + MIR SINE MIR 46 256 -6 370 216 216 34 chr15 13826649 13826797 -71868957 + MER5A DNA MER1_type 15 189 0 21 0 0 0 chr15 13826960 13826981 -71868773 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr15 13827124 13827169 -71868585 + AT_rich Low_complexity Low_complexity 1 45 0 238 246 0 18 chr15 13828958 13829015 -71866739 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 211 189 0 0 chr15 13829113 13829150 -71866604 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr15 13830598 13830621 -71865133 + (A)n Simple_repeat Simple_repeat 1 23 0 2027 63 78 15 chr15 13832623 13832931 -71862823 + AluSp SINE Alu 1 325 0 289 343 123 37 chr15 13833048 13833348 -71862406 + L2 LINE L2 2945 3270 -2 1460 167 0 30 chr15 13833903 13834172 -71861582 + AluJb SINE Alu 34 294 -18 252 311 0 50 chr15 13834277 13834396 -71861358 + MER103 DNA DNA 9 121 -45 21 36 0 0 chr15 13834488 13834516 -71861238 + AT_rich Low_complexity Low_complexity 1 28 0 2401 66 3 3 chr15 13834715 13835016 -71860738 + AluSg SINE Alu 2 302 -8 195 42 0 0 chr15 13835220 13835244 -71860510 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 254 140 0 20 chr15 13835239 13835289 -71860465 + (TA)n Simple_repeat Simple_repeat 1 49 0 225 197 0 66 chr15 13835393 13835469 -71860285 + GA-rich Low_complexity Low_complexity 3 73 0 204 40 0 0 chr15 13836781 13836806 -71858948 + (A)n Simple_repeat Simple_repeat 1 25 0 208 327 0 0 chr15 13837129 13837181 -71858573 + L2 LINE L2 3205 3256 -16 30 0 0 0 chr15 13837224 13837254 -71858500 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 13837536 13837557 -71858197 + AT_rich Low_complexity Low_complexity 1 21 0 2276 102 0 7 chr15 13840096 13840400 -71855354 + AluY SINE Alu 1 302 -9 1880 166 0 3 chr15 13840400 13840683 -71855071 - AluJo SINE Alu -30 282 1 608 294 75 15 chr15 13840741 13840942 -71854812 - MIR SINE MIR -1 261 49 201 279 0 0 chr15 13841972 13842015 -71853739 - L2 LINE L2 -9 3304 3262 532 243 40 62 chr15 13842226 13842403 -71853351 + MIR SINE MIR 48 220 -42 322 235 182 11 chr15 13842774 13842919 -71852835 + MIR SINE MIR 12 188 -62 520 152 0 33 chr15 13842926 13843018 -71852736 + AluJ/FLAM SINE Alu 1 89 -223 * 759 194 0 7 chr15 13843009 13843153 -71852601 + AluJo/FRAM SINE Alu 162 304 -8 2267 101 7 0 chr15 13843247 13843545 -71852209 + AluSp SINE Alu 1 300 -13 387 0 0 0 chr15 13844069 13844112 -71851642 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2236 68 11 0 chr15 13844119 13844397 -71851357 - AluSp SINE Alu -32 281 1 264 30 0 0 chr15 13844935 13844968 -71850786 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 269 310 73 30 chr15 13846096 13846296 -71849458 + MIR SINE MIR 16 221 -41 1975 114 29 26 chr15 13846558 13846866 -71848888 - AluSg SINE Alu -1 309 1 249 238 0 0 chr15 13849076 13849156 -71846598 + A-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr15 13851838 13851876 -71843878 + AT_rich Low_complexity Low_complexity 1 38 0 290 357 137 6 chr15 13852316 13852484 -71843270 - MIR SINE MIR -71 191 2 217 259 0 0 chr15 13852864 13852918 -71842836 + A-rich Low_complexity Low_complexity 1 54 0 327 284 37 0 chr15 13853003 13853084 -71842670 + L2 LINE L2 3137 3220 -52 284 250 73 52 chr15 13853557 13853653 -71842101 + L2 LINE L2 3150 3247 -25 2250 100 10 10 chr15 13853871 13854171 -71841583 + AluSx SINE Alu 1 300 -12 218 309 0 0 chr15 13855828 13855883 -71839871 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 244 310 60 10 chr15 13856208 13856308 -71839446 + MER91C DNA MER1_type 36 140 0 21 36 0 0 chr15 13856392 13856420 -71839334 + AT_rich Low_complexity Low_complexity 1 28 0 237 233 17 0 chr15 13856599 13856659 -71839095 + (TG)n Simple_repeat Simple_repeat 2 62 0 201 74 0 0 chr15 13859127 13859154 -71836600 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr15 13859743 13859765 -71835989 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 19 9 chr15 13860021 13860128 -71835626 - L2 LINE L2 -3 3269 3162 1884 71 0 4 chr15 13860139 13860377 -71835377 - AluY SINE Alu -6 305 69 615 246 102 5 chr15 13862669 13862856 -71832898 - MIR3 SINE MIR 0 208 4 22 56 0 0 chr15 13866976 13867012 -71828742 + AT_rich Low_complexity Low_complexity 1 36 0 718 298 31 9 chr15 13870618 13870843 -71824911 - MIR SINE MIR -30 232 3 278 300 12 0 chr15 13873999 13874079 -71821675 + GA-rich Low_complexity Low_complexity 2 82 0 417 39 0 0 chr15 13876560 13876611 -71819143 + (TG)n Simple_repeat Simple_repeat 2 52 0 273 140 18 18 chr15 13878075 13878132 -71817622 + L1P5 LINE L1 5724 5780 -376 331 258 125 8 chr15 13878157 13878277 -71817477 + L1MC4a LINE L1 5862 5995 -1813 27 29 0 0 chr15 13878356 13878390 -71817364 + AT_rich Low_complexity Low_complexity 1 34 0 209 125 16 47 chr15 13878390 13878454 -71817300 + (TTAAA)n Simple_repeat Simple_repeat 3 64 0 2210 51 25 63 chr15 13879848 13880163 -71815591 + AluY SINE Alu 1 303 -8 261 328 35 43 chr15 13880199 13880315 -71815439 - MIR SINE MIR -62 146 32 872 301 93 4 chr15 13880483 13880752 -71815002 + MLT1K LTR MaLR 226 518 -70 203 246 0 14 chr15 13880841 13880910 -71814844 + GA-rich Low_complexity Low_complexity 2 69 0 287 345 35 41 chr15 13881592 13881737 -71814017 + L2 LINE L2 3129 3272 0 366 343 0 0 chr15 13882984 13883086 -71812668 - MIR3 SINE MIR -15 193 92 451 340 68 31 chr15 13883258 13883449 -71812305 + L2 LINE L2 3074 3271 -1 1496 178 86 29 chr15 13886286 13886601 -71809153 + MER2 DNA MER2_type 13 345 0 22 0 0 0 chr15 13886666 13886688 -71809066 + AT_rich Low_complexity Low_complexity 1 22 0 2228 92 0 16 chr15 13887045 13887348 -71808406 + AluSx SINE Alu 1 298 -14 277 274 9 62 chr15 13888184 13888297 -71807457 + L2 LINE L2 3207 3313 0 707 301 26 5 chr15 13890379 13890572 -71805182 + MIR SINE MIR 8 204 -58 477 293 134 16 chr15 13890595 13890841 -71804913 - L2 LINE L2 -51 3262 2988 210 243 29 57 chr15 13890955 13891025 -71804729 + MIR SINE MIR 192 259 -3 335 270 22 34 chr15 13891954 13892141 -71803613 + MLT1I LTR MaLR 270 409 0 2559 37 0 3 chr15 13894074 13894370 -71801384 + AluY SINE Alu 1 295 -16 22 35 0 0 chr15 13894872 13894901 -71800853 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr15 13895490 13895517 -71800237 + (A)n Simple_repeat Simple_repeat 1 27 0 282 95 0 0 chr15 13895673 13895715 -71800039 + (A)n Simple_repeat Simple_repeat 1 42 0 409 356 27 5 chr15 13896430 13896618 -71799136 + L2 LINE L2 2622 2813 -501 687 68 0 0 chr15 13896618 13896706 -71799048 - AluS SINE Alu -224 88 1 452 198 55 0 chr15 13897232 13897323 -71798431 + MIR SINE MIR 97 192 -70 198 219 0 0 chr15 13899649 13899681 -71796073 - L2 LINE L2 -19 3253 3222 255 229 16 0 chr15 13899725 13899786 -71795968 - MIR SINE MIR -149 113 52 1422 114 32 4 chr15 13899914 13900160 -71795594 + L1MA8 LINE L1 6039 6291 0 2379 73 0 3 chr15 13900234 13900534 -71795220 - AluSg SINE Alu -11 299 1 195 130 78 0 chr15 13900607 13900684 -71795070 + (TA)n Simple_repeat Simple_repeat 1 83 0 2204 94 0 7 chr15 13900992 13901303 -71794451 + AluSp SINE Alu 1 309 0 299 322 143 35 chr15 13901557 13901787 -71793967 + MIR SINE MIR 7 261 -1 501 251 219 27 chr15 13902375 13902594 -71793160 - MIR SINE MIR 0 262 2 713 275 105 21 chr15 13902683 13903160 -71792594 - L1ME4a LINE L1 -8 6113 5597 1969 173 11 6 chr15 13903186 13903539 -71792215 + MER46B DNA MER2_type 1 230 -6 322 290 129 1 chr15 13903546 13903741 -71792013 - L1ME4a LINE L1 -620 5550 5332 243 118 71 0 chr15 13903833 13903918 -71791836 + (TA)n Simple_repeat Simple_repeat 1 91 0 26 50 0 0 chr15 13904013 13904053 -71791701 + AT_rich Low_complexity Low_complexity 1 40 0 361 359 76 29 chr15 13904241 13904458 -71791296 - L1ME4a LINE L1 -832 5314 5076 2139 91 94 21 chr15 13904458 13904797 -71790957 - THE1B LTR MaLR 0 364 1 361 359 76 29 chr15 13904797 13904894 -71790860 - L1ME4a LINE L1 -1070 5076 4985 427 268 86 83 chr15 13905329 13905643 -71790111 - L1ME4a LINE L1 -1751 4395 4081 3006 118 66 23 chr15 13905757 13905786 -71789968 - L1MA9 LINE L1 -155 6157 6131 2689 191 26 48 chr15 13905786 13906352 -71789402 + MLT2B3 LTR ERVL 1 554 0 3006 118 66 23 chr15 13906352 13906839 -71788915 - L1MA9 LINE L1 -181 6131 5619 2670 156 62 6 chr15 13906941 13907474 -71788280 + L1M1 LINE L1 2165 2727 -4838 612 211 0 0 chr15 13908998 13909112 -71786642 - FLAM_C SINE Alu -18 115 2 301 290 174 13 chr15 13909145 13909300 -71786454 - L3 LINE CR1 -644 933 754 337 300 67 33 chr15 13909344 13909524 -71786230 - MIR SINE MIR -40 222 37 362 261 68 0 chr15 13909809 13909897 -71785857 - L2 LINE L2 -2 3311 3218 198 291 139 13 chr15 13909905 13909984 -71785770 - L3 LINE CR1 -1188 389 301 318 278 139 103 chr15 13910365 13910588 -71785166 - MIR SINE MIR -12 250 20 1508 172 28 28 chr15 13912014 13912305 -71783449 + AluJo SINE Alu 4 294 -18 498 271 13 26 chr15 13912677 13912832 -71782922 - MIR SINE MIR -37 225 73 262 247 113 31 chr15 13913853 13913950 -71781804 - MIR SINE MIR -118 144 40 8866 177 50 9 chr15 13914753 13916682 -71779072 - L1 LINE L1 -972 5174 3167 216 200 0 0 chr15 13916816 13916856 -71778898 + CT-rich Low_complexity Low_complexity 2 41 0 1117 257 217 0 chr15 13917885 13918391 -71777363 + LTR50 LTR ERVL 9 624 -171 268 299 113 62 chr15 13918717 13918991 -71776763 + L2 LINE L2 2327 2614 -700 29 0 0 0 chr15 13919059 13919088 -71776666 + AT_rich Low_complexity Low_complexity 1 29 0 229 304 58 72 chr15 13919775 13919913 -71775841 + L2 LINE L2 3137 3272 0 22 35 0 0 chr15 13920232 13920261 -71775493 + AT_rich Low_complexity Low_complexity 1 29 0 219 36 0 0 chr15 13920669 13920697 -71775057 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2131 157 5 22 chr15 13921000 13921369 -71774385 + MLT1A1 LTR MaLR 1 363 -2 183 250 0 21 chr15 13921817 13921865 -71773889 - MIR3 SINE MIR -3 205 159 832 112 6 43 chr15 13922159 13922320 -71773434 + L1MA5 LINE L1 6141 6295 -5 1624 148 32 14 chr15 13922900 13923183 -71772571 - AluJb SINE Alu -20 292 5 366 159 0 0 chr15 13926469 13926538 -71769216 + A-rich Low_complexity Low_complexity 1 69 0 228 54 89 18 chr15 13926706 13926762 -71768992 + LTR66 LTR ERVL 380 439 -171 308 234 0 0 chr15 13926788 13926852 -71768902 - L1MC4 LINE L1 -1339 6703 6640 182 277 0 21 chr15 13927836 13927883 -71767871 + MIR SINE MIR 27 72 -136 683 336 33 35 chr15 13928168 13928238 -71767516 - L3 LINE CR1 -5 1572 1503 2172 108 23 7 chr15 13928238 13928544 -71767210 - AluY SINE Alu 0 311 1 683 336 33 35 chr15 13928544 13928869 -71766885 - L3 LINE CR1 -74 1503 1178 338 181 41 0 chr15 13929090 13929169 -71766585 + LTR50 LTR ERVL 443 795 0 1967 171 0 0 chr15 13929387 13929692 -71766062 + AluJb SINE Alu 1 305 -7 852 161 70 66 chr15 13930272 13930514 -71765240 + L1MA9 LINE L1 6026 6268 -44 195 230 97 88 chr15 13931469 13931582 -71764172 - MIR3 SINE MIR -87 121 8 2427 49 0 3 chr15 13932194 13932506 -71763248 - AluY SINE Alu 0 311 1 335 181 36 0 chr15 13932906 13932989 -71762765 - L1MB8 LINE L1 0 6178 6093 2827 10 0 3 chr15 13933462 13933774 -71761980 - AluYa5 SINE Alu 0 311 1 996 190 29 9 chr15 13935279 13935584 -71760170 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr15 13936124 13936148 -71759606 + AT_rich Low_complexity Low_complexity 1 24 0 502 276 88 54 chr15 13936262 13936649 -71759105 - L1ME4a LINE L1 -180 5941 5542 1100 156 0 60 chr15 13936768 13936967 -71758787 - AluJo SINE Alu -125 187 1 591 261 42 65 chr15 13936968 13937061 -71758693 - L1ME4a LINE L1 -745 5401 5307 2125 87 3 58 chr15 13937061 13937373 -71758381 - AluSg SINE Alu -15 295 1 591 261 42 65 chr15 13937373 13937589 -71758165 - L1ME4a LINE L1 -839 5307 5099 442 299 91 36 chr15 13937678 13937961 -71757793 - L1ME4a LINE L1 -1251 4895 4600 2082 87 66 0 chr15 13938330 13938616 -71757138 - AluSq SINE Alu -8 305 1 276 325 33 33 chr15 13939712 13939832 -71755922 - MIR SINE MIR -73 135 16 21 36 0 0 chr15 13940172 13940200 -71755554 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 12 12 chr15 13942182 13942510 -71753244 - L1MC1 LINE L1 0 6333 6006 230 299 47 28 chr15 13944242 13944349 -71751405 - MIR SINE MIR -71 191 83 754 165 0 0 chr15 13944402 13944523 -71751231 + FLAM_C SINE Alu 1 121 -22 1756 148 0 0 chr15 13944900 13945157 -71750597 - AluSx SINE Alu -55 257 1 1110 176 92 40 chr15 13945275 13945525 -71750229 - AluJo SINE Alu -49 263 1 548 256 57 17 chr15 13945667 13945843 -71749911 - MIR SINE MIR -14 248 66 227 208 21 0 chr15 13945953 13946001 -71749753 + CT-rich Low_complexity Low_complexity 2 50 0 243 0 0 0 chr15 13946007 13946034 -71749720 + (TG)n Simple_repeat Simple_repeat 2 28 0 405 0 0 0 chr15 13946401 13946446 -71749308 + (TG)n Simple_repeat Simple_repeat 2 46 0 1338 184 4 8 chr15 13946448 13946682 -71749072 - AluJo SINE Alu -36 276 44 186 43 0 0 chr15 13947121 13947144 -71748610 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 245 331 56 35 chr15 13948802 13948944 -71746810 - MIR3 SINE MIR -29 179 35 388 239 180 42 chr15 13949413 13949580 -71746174 + MIR3 SINE MIR 2 191 -17 228 86 0 0 chr15 13953030 13953065 -71742689 + (TG)n Simple_repeat Simple_repeat 2 36 0 395 294 19 9 chr15 13953744 13953889 -71741865 + MER5A DNA MER1_type 26 178 0 620 231 84 0 chr15 13954140 13954283 -71741471 + MER5A DNA MER1_type 35 189 0 1479 184 96 0 chr15 13954854 13955126 -71740628 + AluJo SINE Alu 1 298 -14 344 271 70 8 chr15 13955380 13955509 -71740245 - MIR SINE MIR -123 139 3 2370 82 0 13 chr15 13956640 13956945 -71738809 - AluSc SINE Alu -8 301 1 423 220 120 0 chr15 13957031 13957131 -71738623 - MIR SINE MIR -70 192 81 273 374 70 42 chr15 13957498 13957856 -71737898 + L2 LINE L2 2898 3265 -7 201 74 0 0 chr15 13958438 13958465 -71737289 + (GAA)n Simple_repeat Simple_repeat 2 28 0 331 222 56 79 chr15 13959299 13959425 -71736329 + MIR SINE MIR 66 188 -74 554 269 0 0 chr15 13959573 13959723 -71736031 + FLAM_A SINE Alu 1 133 0 2640 52 0 0 chr15 13961333 13961640 -71734114 + AluY SINE Alu 1 307 -4 2344 75 0 0 chr15 13962402 13962712 -71733042 - AluY SINE Alu 0 310 1 1542 176 17 3 chr15 13962714 13963004 -71732750 - AluJb SINE Alu -18 294 1 2432 101 0 0 chr15 13963934 13964241 -71731513 - AluSg SINE Alu -1 309 3 2206 112 0 3 chr15 13965614 13965909 -71729845 + AluSq SINE Alu 1 294 -19 212 88 70 0 chr15 13965910 13965967 -71729787 + (TA)n Simple_repeat Simple_repeat 1 61 0 355 216 10 62 chr15 13966036 13966133 -71729621 - MIR SINE MIR -79 183 92 258 81 0 0 chr15 13967780 13967817 -71727937 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr15 13968358 13968378 -71727376 + (TA)n Simple_repeat Simple_repeat 2 21 0 939 157 12 6 chr15 13970804 13970976 -71724778 + L1MB8 LINE L1 5997 6169 -9 1955 142 3 3 chr15 13970994 13971303 -71724451 - AluSx SINE Alu -3 309 1 651 129 0 10 chr15 13972346 13972447 -71723307 - HY3 scRNA scRNA -1 100 1 411 273 39 16 chr15 13972447 13972575 -71723179 + MIR SINE MIR 61 191 -71 181 116 47 70 chr15 13972683 13972726 -71723028 + MIR SINE MIR 218 259 -3 1718 205 32 20 chr15 13972749 13973149 -71722605 + L1ME1 LINE L1 5757 6161 -5 469 287 83 9 chr15 13973783 13974005 -71721749 - MIR3 SINE MIR -6 256 9 379 138 31 0 chr15 13975595 13975660 -71720094 + MER116 DNA Mariner 1 67 -13 1545 189 18 7 chr15 13975928 13976234 -71719520 - AluJb SINE Alu 0 310 2 652 235 107 11 chr15 13976430 13976617 -71719137 - MIR SINE MIR 0 262 58 395 276 32 8 chr15 13976783 13976906 -71718848 + L2 LINE L2 3187 3312 -1 207 0 0 0 chr15 13979167 13979190 -71716564 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 13981140 13981163 -71714591 + AT_rich Low_complexity Low_complexity 1 23 0 326 246 0 0 chr15 13981172 13981233 -71714521 + AluS SINE Alu 1 61 -242 38 39 0 0 chr15 13983038 13983090 -71712664 + AT_rich Low_complexity Low_complexity 1 52 0 703 213 0 0 chr15 13984319 13984446 -71711308 - FLAM_A SINE Alu -10 132 6 392 276 186 30 chr15 13984506 13984705 -71711049 + MIR SINE MIR 15 244 -18 214 260 78 0 chr15 13987570 13987647 -71708107 + MIR SINE MIR 67 149 -113 1676 173 14 14 chr15 13987903 13988198 -71707556 - AluJo SINE Alu -17 295 1 1565 130 0 0 chr15 13988210 13988426 -71707328 - AluJb SINE Alu -11 301 86 23 0 0 0 chr15 13988713 13988736 -71707018 + AT_rich Low_complexity Low_complexity 1 23 0 618 310 50 21 chr15 13989096 13989335 -71706419 - MIR SINE MIR -11 251 6 2328 85 0 13 chr15 14089713 14090018 -71605736 + AluSg SINE Alu 1 301 -9 193 311 108 0 chr15 14090313 14090387 -71605367 + MIR SINE MIR 73 154 -108 30 27 0 0 chr15 14090642 14090679 -71605075 + AT_rich Low_complexity Low_complexity 1 37 0 1945 109 84 0 chr15 14091247 14091522 -71604232 - AluSx SINE Alu -14 298 1 595 257 14 7 chr15 14091750 14091898 -71603856 + AluJo SINE Alu 3 151 -161 294 269 113 11 chr15 14092171 14092357 -71603397 - L1MC5 LINE L1 -34 7927 7723 1505 164 19 65 chr15 14092623 14092933 -71602821 + AluJo SINE Alu 1 296 -16 315 111 28 28 chr15 14092944 14093016 -71602738 + GA-rich Low_complexity Low_complexity 1 72 0 480 240 128 36 chr15 14093553 14093749 -71602005 + MIR SINE MIR 49 262 0 23 33 0 0 chr15 14094307 14094337 -71601417 + AT_rich Low_complexity Low_complexity 1 30 0 321 26 0 0 chr15 14094988 14095026 -71600728 + (CA)n Simple_repeat Simple_repeat 2 39 0 828 296 47 42 chr15 14095188 14095570 -71600184 - L2 LINE L2 -4 3309 2926 615 205 0 8 chr15 14095570 14095687 -71600067 + MLT1C LTR MaLR 352 467 0 503 315 118 34 chr15 14095844 14096082 -71599672 + MIR SINE MIR 5 262 0 827 177 0 0 chr15 14097118 14097265 -71598489 + L1MB5 LINE L1 6020 6166 -8 1426 149 106 21 chr15 14097721 14098003 -71597751 - AluJo SINE Alu -6 306 1 275 258 0 0 chr15 14098055 14098117 -71597637 - MIR SINE MIR -27 235 174 1476 177 32 14 chr15 14098372 14098681 -71597073 + AluJb SINE Alu 1 314 0 758 128 90 19 chr15 14098737 14098893 -71596861 - L1MB2 LINE L1 -1 6170 6004 3562 156 42 20 chr15 14100090 14100839 -71594915 + LTR1B LTR ERV1 1 785 0 368 322 8 8 chr15 14101058 14101179 -71594575 + L2 LINE L2 3191 3311 -2 2391 77 0 0 chr15 14101269 14101569 -71594185 - AluY SINE Alu -11 300 1 2717 59 62 6 chr15 14101666 14102021 -71593733 + THE1C LTR MaLR 1 375 0 558 317 141 36 chr15 14102226 14102448 -71593306 + L2 LINE L2 1869 2066 -1248 371 19 0 38 chr15 14102448 14102501 -71593253 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 558 317 141 36 chr15 14102501 14102859 -71592895 + L2 LINE L2 2066 2510 -804 698 284 129 9 chr15 14103172 14103404 -71592350 - MIR SINE MIR 0 262 3 1088 179 18 40 chr15 14103631 14103854 -71591900 - MER20 DNA MER1_type -1 218 1 1605 133 0 17 chr15 14104201 14104441 -71591313 + AluJo SINE Alu 36 271 -41 22 0 0 0 chr15 14104444 14104466 -71591288 + AT_rich Low_complexity Low_complexity 1 22 0 1968 98 95 11 chr15 14105014 14105299 -71590455 - AluSx SINE Alu -3 309 1 317 184 23 35 chr15 14106058 14106145 -71589609 - L1PA16 LINE L1 -2 6164 6079 22 0 0 0 chr15 14106330 14106352 -71589402 + AT_rich Low_complexity Low_complexity 1 22 0 2448 97 3 0 chr15 14106953 14107264 -71588490 - AluSx SINE Alu 0 312 1 1957 106 26 153 chr15 14107419 14107613 -71588141 + MSTA LTR MaLR 1 218 -210 764 95 0 9 chr15 14107613 14107729 -71588025 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 1957 106 26 153 chr15 14107729 14107763 -71587991 + MSTA LTR MaLR 218 255 -173 1845 178 0 0 chr15 14107763 14108056 -71587698 - AluSx SINE Alu -19 293 1 1957 106 26 153 chr15 14108056 14108316 -71587438 + MSTA LTR MaLR 255 428 0 248 314 25 33 chr15 14108784 14108800 -71586954 - MIR SINE MIR -115 147 132 2088 126 39 39 chr15 14108800 14108841 -71586913 - THE1B LTR MaLR 0 364 324 2084 123 0 3 chr15 14108841 14109158 -71586596 - AluSx SINE Alu 0 316 1 2088 126 39 39 chr15 14109158 14109479 -71586275 - THE1B LTR MaLR -39 325 1 248 314 25 33 chr15 14109479 14109583 -71586171 - MIR SINE MIR -130 132 28 801 189 0 0 chr15 14111022 14111154 -71584600 + FLAM_A SINE Alu 2 133 0 2270 110 0 10 chr15 14111462 14111770 -71583984 + AluSx SINE Alu 2 306 -6 333 200 107 100 chr15 14111824 14111964 -71583790 + MER69 DNA AcHobo 7 147 -2379 1846 145 3 20 chr15 14112764 14113068 -71582686 - AluJo SINE Alu -13 299 1 414 280 150 20 chr15 14113520 14113723 -71582031 + MIR SINE MIR 35 261 -1 1992 154 6 3 chr15 14113868 14114179 -71581575 - AluJb SINE Alu 0 312 1 2466 253 172 28 chr15 14114352 14115552 -71580202 + L2 LINE L2 1966 3312 -1 3067 157 86 2 chr15 14115587 14116201 -71579553 - MER44D DNA MER2_type 0 705 4 1830 160 24 0 chr15 14116442 14116730 -71579024 + AluJb SINE Alu 3 297 -15 1527 86 0 0 chr15 14116731 14116954 -71578800 + AluSg/x SINE Alu 85 307 0 1322 186 138 75 chr15 14117103 14117208 -71578546 + MLT2D LTR ERVL 1 98 -417 2042 142 3 0 chr15 14117208 14117510 -71578244 - AluSx SINE Alu -8 304 2 1322 186 138 75 chr15 14117510 14117817 -71577937 + MLT2D LTR ERVL 98 515 0 365 225 36 45 chr15 14118411 14118522 -71577232 + MER103 DNA DNA 21 130 -36 523 330 132 36 chr15 14118566 14118736 -71577018 - L2 LINE L2 -1217 2097 1945 2058 120 0 0 chr15 14118736 14119019 -71576735 + AluSg SINE Alu 1 283 -27 347 61 0 0 chr15 14119019 14119058 -71576696 + FLAM_C SINE Alu 1 322 0 523 330 132 36 chr15 14119058 14119407 -71576347 - L2 LINE L2 -1369 1945 1527 2861 131 0 18 chr15 14119415 14119851 -71575903 - MSTC LTR MaLR 0 428 1 205 190 30 110 chr15 14119961 14120061 -71575693 - L3b LINE CR1 -335 1248 1157 22 56 0 0 chr15 14120530 14120566 -71575188 + AT_rich Low_complexity Low_complexity 1 36 0 1057 173 0 0 chr15 14120650 14120818 -71574936 + FRAM SINE Alu 1 166 -10 1678 177 7 13 chr15 14120821 14121131 -71574623 + AluJo SINE Alu 1 308 -4 804 226 181 60 chr15 14121528 14121783 -71573971 - MER20B DNA MER1_type -3 780 557 1647 188 3 35 chr15 14121783 14122097 -71573657 - AluJo SINE Alu -6 306 3 804 226 181 60 chr15 14122097 14122179 -71573575 - MER20B DNA MER1_type -226 557 486 2286 108 16 3 chr15 14122179 14122486 -71573268 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr15 14122486 14122510 -71573244 + (TA)n Simple_repeat Simple_repeat 2 25 0 804 226 181 60 chr15 14122510 14122866 -71572888 - MER20B DNA MER1_type -296 487 1 1981 110 23 17 chr15 14123050 14123350 -71572404 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr15 14124933 14124955 -71570799 + AT_rich Low_complexity Low_complexity 1 22 0 224 357 19 24 chr15 14125498 14125667 -71570087 - MIR3 SINE MIR -6 202 34 414 159 0 13 chr15 14125956 14126170 -71569584 + AluJo SINE Alu 1 299 -13 2136 93 0 48 chr15 14127474 14127786 -71567968 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr15 14127898 14127919 -71567835 + (A)n Simple_repeat Simple_repeat 1 21 0 323 245 144 8 chr15 14127988 14128245 -71567509 - L1MC5 LINE L1 -47 7914 7623 361 235 61 97 chr15 14128352 14128599 -71567155 - L1MC5 LINE L1 -465 7496 7259 2290 116 3 0 chr15 14128600 14128903 -71566851 - AluSx SINE Alu -8 304 1 236 222 87 87 chr15 14129008 14129260 -71566494 - L1MC5 LINE L1 -738 7223 6972 599 332 4 24 chr15 14129374 14129485 -71566269 - L1MC4 LINE L1 -1040 7002 6890 2048 125 31 55 chr15 14129485 14129869 -71565885 + THE1C LTR MaLR 1 375 0 599 332 4 24 chr15 14129869 14130010 -71565744 - L1MC4 LINE L1 -1152 6890 6755 229 342 71 64 chr15 14130132 14130413 -71565341 + MLT1I LTR MaLR 95 377 -32 326 308 134 55 chr15 14130421 14130765 -71564989 - L1MC4a LINE L1 -1132 6676 6306 317 216 82 82 chr15 14130808 14130851 -71564903 - L1MC4a LINE L1 -1541 6267 6225 1641 197 6 25 chr15 14130851 14131166 -71564588 - AluJo SINE Alu -3 309 1 317 216 82 82 chr15 14131166 14131316 -71564438 - L1MC4a LINE L1 -1582 6226 6074 788 241 96 100 chr15 14131364 14132043 -71563711 - L1MC4a LINE L1 -1875 5933 5258 201 39 0 0 chr15 14132182 14132208 -71563546 + (T)n Simple_repeat Simple_repeat 1 26 0 243 310 0 0 chr15 14132431 14132518 -71563236 - L1MC4a LINE L1 -1317 4829 4743 314 87 0 0 chr15 14132944 14132990 -71562764 - MADE1 DNA Mariner -33 47 2 1054 239 41 88 chr15 14133065 14133529 -71562225 + MSTB2 LTR MaLR 16 457 0 2545 119 3 13 chr15 14133680 14134058 -71561696 + THE1C LTR MaLR 1 374 -1 273 29 0 0 chr15 14134792 14134826 -71560928 + (CA)n Simple_repeat Simple_repeat 2 35 0 2230 116 0 0 chr15 14135048 14135341 -71560413 - AluSx SINE Alu -19 293 1 285 98 0 0 chr15 14136657 14136698 -71559056 + (TC)n Simple_repeat Simple_repeat 1 41 0 3022 140 92 0 chr15 14137042 14137258 -71558496 + MER7C DNA MER2_type 1 196 -2832 203 61 30 0 chr15 14137258 14137291 -71558463 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 3022 140 92 0 chr15 14137291 14137617 -71558137 + MER7C DNA MER2_type 196 593 -9 345 307 42 30 chr15 14137714 14137880 -71557874 + L2 LINE L2 2603 2770 -544 392 220 167 54 chr15 14137886 14138054 -71557700 - MIR SINE MIR -72 190 4 2151 116 0 0 chr15 14138089 14138403 -71557351 + AluSx SINE Alu 1 314 0 1746 176 77 57 chr15 14138540 14139035 -71556719 + MLT1D LTR MaLR 1 505 0 1686 156 90 0 chr15 14140147 14140468 -71555286 + MLT1A1 LTR MaLR 16 365 0 315 300 20 10 chr15 14140476 14140576 -71555178 - L2 LINE L2 -10 3303 3203 821 116 7 14 chr15 14140864 14141011 -71554743 + L1MC3 LINE L1 6950 7095 -690 279 165 38 63 chr15 14141013 14141092 -71554662 + MLT1F1 LTR MaLR 35 111 -456 2075 190 104 45 chr15 14141092 14141651 -71554103 + L1MC3 LINE L1 7174 7765 -20 393 198 26 0 chr15 14142417 14142533 -71553221 + GA-rich Low_complexity Low_complexity 2 120 0 252 111 0 0 chr15 14144595 14144640 -71551114 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 258 277 72 0 chr15 14145153 14145236 -71550518 - L2 LINE L2 -47 3225 3137 449 248 20 0 chr15 14145350 14145451 -71550303 - MIR SINE MIR -73 189 87 242 346 110 48 chr15 14145547 14145803 -71549951 - L2 LINE L2 -340 2974 2735 601 250 55 10 chr15 14145803 14145850 -71549904 - MER3 DNA MER1_type 0 209 166 2144 113 3 23 chr15 14145850 14146160 -71549594 - AluSx SINE Alu -8 304 1 601 250 55 10 chr15 14146160 14146312 -71549442 - MER3 DNA MER1_type -43 166 1 242 346 110 48 chr15 14146312 14146765 -71548989 - L2 LINE L2 -579 2735 2221 210 351 0 14 chr15 14146886 14146960 -71548794 - MER5A DNA MER1_type -110 79 7 180 288 12 38 chr15 14147152 14147232 -71548522 - L2 LINE L2 -1355 1959 1882 23 0 0 0 chr15 14147312 14147335 -71548419 + AT_rich Low_complexity Low_complexity 1 23 0 644 132 46 46 chr15 14147335 14147476 -71548278 - L1MA4 LINE L1 0 6300 6157 4527 115 13 16 chr15 14147476 14148169 -71547585 - LTR8 LTR ERV1 0 691 1 1575 184 83 54 chr15 14148179 14148624 -71547130 - MER31B LTR ERV1 -4 462 5 2326 91 3 0 chr15 14149316 14149612 -71546142 - AluSx SINE Alu -15 297 1 2329 81 0 0 chr15 14149988 14150273 -71545481 - AluSx SINE Alu -8 304 20 323 319 0 0 chr15 14150548 14150639 -71545115 - MIR SINE MIR -64 144 54 2203 136 0 0 chr15 14150970 14151271 -71544483 + AluSx SINE Alu 1 301 -11 458 307 138 5 chr15 14151285 14151503 -71544251 - MIR SINE MIR -2 260 14 1597 213 13 43 chr15 14151503 14151657 -71544097 + MLT1A1 LTR MaLR 1 158 -207 2187 137 0 3 chr15 14151657 14151970 -71543784 + AluSx SINE Alu 1 312 0 1597 213 13 43 chr15 14151970 14152191 -71543563 + MLT1A1 LTR MaLR 158 365 0 292 300 213 23 chr15 14152944 14153297 -71542457 - L2 LINE L2 -25 3247 2828 571 280 31 31 chr15 14153457 14153650 -71542104 - MIR SINE MIR 0 262 70 1547 186 22 16 chr15 14153651 14153822 -71541932 + MLT1A1 LTR MaLR 15 190 -175 1654 184 31 0 chr15 14153822 14154110 -71541644 + AluJb SINE Alu 2 298 -14 1547 186 22 16 chr15 14154110 14154261 -71541493 + MLT1A1 LTR MaLR 190 339 -26 678 133 0 0 chr15 14154269 14154374 -71541380 + MLT1A2 LTR MaLR 270 374 0 400 375 27 48 chr15 14154468 14154761 -71540993 + L2 LINE L2 2986 3272 0 297 355 43 14 chr15 14154913 14155054 -71540700 - MIR3 SINE MIR -61 147 3 332 324 152 12 chr15 14155061 14155317 -71540437 - L1ME4a LINE L1 -257 5864 5573 1935 153 0 10 chr15 14156675 14156963 -71538791 - AluSx SINE Alu -24 288 4 2217 119 3 0 chr15 14156983 14157278 -71538476 - AluSx SINE Alu -16 296 1 2219 101 0 7 chr15 14157453 14157741 -71538013 - AluSx SINE Alu -26 286 1 2143 148 11 8 chr15 14158426 14158785 -71536969 - MLT1A1 LTR MaLR -5 360 1 453 221 250 0 chr15 14159503 14159643 -71536111 - MER5A DNA MER1_type 0 189 15 557 213 69 23 chr15 14159792 14160020 -71535734 + MER106B DNA MER1_type 1 1059 0 453 168 0 84 chr15 14160464 14160583 -71535171 + ERVL-B1 LTR ERVL 777 885 -4879 * 12232 150 18 15 chr15 14160580 14161229 -71534525 + ERVL-B1 LTR ERVL 3082 3728 -2036 1924 132 7 0 chr15 14161229 14161510 -71534244 + AluJo SINE Alu 30 312 0 12232 150 18 15 chr15 14161510 14162963 -71532791 + ERVL-B1 LTR ERVL 3728 5190 -574 926 133 7 0 chr15 14162964 14163099 -71532655 + AluJo SINE Alu 1 136 -176 2771 137 34 60 chr15 14163107 14163704 -71532050 + ERVL-B1 LTR ERVL 5176 5756 -8 2062 158 77 47 chr15 14163705 14164198 -71531556 + MLT2B1 LTR ERVL 1 508 -12 607 314 67 5 chr15 14164510 14164733 -71531021 - MIR SINE MIR -3 259 23 2685 167 15 9 chr15 14164909 14165435 -71530319 - L1MB8 LINE L1 0 6178 5650 944 120 0 0 chr15 14165435 14165560 -71530194 - FLAM_C SINE Alu -7 136 12 1198 217 11 0 chr15 14165571 14165838 -71529916 - L1MB8 LINE L1 -527 5657 5388 2511 198 94 29 chr15 14165861 14166758 -71528996 - L1MB8 LINE L1 -2128 4018 3064 372 270 36 15 chr15 14167934 14168071 -71527683 + L1MC/D LINE L1 5568 5707 -2101 339 25 0 0 chr15 14168100 14168140 -71527614 + (GA)n Simple_repeat Simple_repeat 2 41 0 289 158 0 0 chr15 14168757 14168814 -71526940 + T-rich Low_complexity Low_complexity 1 180 0 2539 44 0 25 chr15 14168814 14169133 -71526621 - AluY SINE Alu 0 368 1 320 272 61 54 chr15 14169201 14169348 -71526406 + MIR3 SINE MIR 54 201 -7 279 0 0 0 chr15 14169687 14169718 -71526036 + (CA)n Simple_repeat Simple_repeat 1 31 0 6754 62 11 0 chr15 14169773 14171116 -71524638 + L1PA6 LINE L1 4773 6135 -19 240 111 0 0 chr15 14171116 14171152 -71524602 + (TA)n Simple_repeat Simple_repeat 1 36 0 431 246 130 43 chr15 14171391 14171776 -71523978 + LTR16B LTR ERVL 18 464 0 1475 180 73 15 chr15 14172211 14172483 -71523271 - AluJb SINE Alu -12 300 13 412 281 69 62 chr15 14172605 14172865 -71522889 + MLT1I LTR MaLR 98 359 -50 2465 258 61 38 chr15 14172876 14174048 -71521706 - L1MC4 LINE L1 0 8042 6843 198 291 181 16 chr15 14174176 14174303 -71521451 + MIR SINE MIR 88 235 -27 198 0 0 0 chr15 14175019 14175041 -71520713 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 352 238 48 0 chr15 14175043 14175127 -71520627 - L2 LINE L2 -15 3298 3211 203 312 0 13 chr15 14176034 14176111 -71519643 + G-rich Low_complexity Low_complexity 86 161 0 664 113 56 63 chr15 14177016 14177158 -71518596 + AluJo SINE Alu 27 167 -145 1038 175 128 13 chr15 14177386 14177620 -71518134 - AluJo SINE Alu -25 287 27 191 314 157 39 chr15 14178217 14178319 -71517435 - L2 LINE L2 0 3313 3200 454 268 24 24 chr15 14178403 14178526 -71517228 - L2 LINE L2 -3 3269 3147 22 0 0 0 chr15 14178661 14178683 -71517071 + AT_rich Low_complexity Low_complexity 1 22 0 1255 134 0 0 chr15 14178989 14179168 -71516586 - AluSg/x SINE Alu -8 304 126 221 360 93 50 chr15 14179747 14180069 -71515685 + L2 LINE L2 2560 2895 -419 1544 150 133 26 chr15 14180074 14180413 -71515341 - THE1C LTR MaLR 0 375 1 202 152 0 0 chr15 14180709 14180742 -71515012 + L2 LINE L2 3272 3304 -9 984 262 26 0 chr15 14180772 14181001 -71514753 - MIR SINE MIR 0 262 28 21 0 0 0 chr15 14181442 14181463 -71514291 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr15 14181765 14181798 -71513956 + AT_rich Low_complexity Low_complexity 1 33 0 2333 74 0 3 chr15 14182147 14182444 -71513310 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 14182676 14182697 -71513057 + AT_rich Low_complexity Low_complexity 1 21 0 2010 119 0 0 chr15 14182852 14183121 -71512633 - AluSx SINE Alu -8 304 36 360 103 0 0 chr15 14183582 14183640 -71512114 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 218 330 9 47 chr15 14184444 14184550 -71511204 + MIR SINE MIR 6 107 -155 286 236 45 11 chr15 14184554 14184643 -71511111 + GA-rich Low_complexity Low_complexity 3 94 0 787 164 0 22 chr15 14184816 14184950 -71510804 - FLAM_A SINE Alu -2 131 1 2528 44 0 0 chr15 14186872 14187169 -71508585 + AluY SINE Alu 1 297 -14 864 184 82 4 chr15 14187435 14187690 -71508064 - MER33 DNA MER1_type -4 320 46 230 284 164 0 chr15 14188159 14188226 -71507528 - MIR SINE MIR -183 79 2 435 294 129 68 chr15 14188228 14188723 -71507031 - L2 LINE L2 -757 2557 2002 1902 166 19 3 chr15 14188723 14189030 -71506724 + AluJo SINE Alu 1 312 0 435 294 129 68 chr15 14189030 14189265 -71506489 - L2 LINE L2 -1312 2002 1783 4944 181 34 41 chr15 14190863 14192690 -71503064 - L1MD1 LINE L1 -1 6241 4432 1046 285 85 40 chr15 14192695 14192766 -71502988 + L2 LINE L2 2362 2428 -886 1580 95 41 0 chr15 14192766 14192987 -71502767 - MER30 DNA MER1_type 0 230 1 1046 285 85 40 chr15 14192987 14193459 -71502295 + L2 LINE L2 2428 2929 -385 1045 73 0 0 chr15 14193724 14193848 -71501906 + AluSg/x SINE Alu 173 296 -16 267 54 0 0 chr15 14194156 14194193 -71501561 - AluSg/x SINE Alu -72 230 194 2310 93 0 3 chr15 14194938 14195240 -71500514 - AluY SINE Alu -10 301 1 23 0 0 0 chr15 14196001 14196024 -71499730 + AT_rich Low_complexity Low_complexity 1 23 0 434 343 85 33 chr15 14196242 14196513 -71499241 - L2 LINE L2 -1 3271 2987 30 45 0 0 chr15 14197571 14197615 -71498139 + AT_rich Low_complexity Low_complexity 1 44 0 336 319 238 14 chr15 14197932 14198142 -71497612 - MIR SINE MIR -4 258 2 239 225 38 25 chr15 14198202 14198282 -71497472 - L1ME LINE L1 -539 5582 5502 953 273 133 53 chr15 14198401 14199375 -71496379 - HAL1 LINE L1 -721 1786 735 462 287 151 25 chr15 14199933 14200250 -71495504 + LTR67 LTR ERVL 2 358 -199 559 302 147 22 chr15 14200612 14201181 -71494573 - L1ME3 LINE L1 -222 5940 5302 369 0 0 0 chr15 14201196 14201237 -71494517 + (TG)n Simple_repeat Simple_repeat 2 42 0 205 50 50 25 chr15 14201237 14201277 -71494477 + (TA)n Simple_repeat Simple_repeat 2 42 0 1889 154 0 33 chr15 14201278 14201584 -71494170 - AluSx SINE Alu -16 296 1 2375 104 0 3 chr15 14201619 14201927 -71493827 + AluSx SINE Alu 1 307 -5 250 248 7 66 chr15 14202101 14202238 -71493516 - L1 LINE L1 -1112 5034 4906 2417 80 0 0 chr15 14202250 14202549 -71493205 - AluSq SINE Alu -14 299 1 416 294 21 21 chr15 14202615 14202758 -71492996 - L1 LINE L1 -1334 4812 4670 2326 85 3 0 chr15 14202803 14203096 -71492658 + AluY SINE Alu 1 294 -17 352 239 164 0 chr15 14203096 14203230 -71492524 - L1 LINE L1 -3789 2357 2202 536 298 19 72 chr15 14203250 14203680 -71492074 - L1M4 LINE L1 -3603 2543 2137 301 276 133 10 chr15 14203777 14203973 -71491781 - L1MC/D LINE L1 -2006 5802 5583 39 50 0 0 chr15 14204158 14204218 -71491536 + AT_rich Low_complexity Low_complexity 1 60 0 358 257 66 72 chr15 14205259 14205411 -71490343 + MER5A DNA MER1_type 7 157 -32 2326 84 0 7 chr15 14205879 14206176 -71489578 + AluSx SINE Alu 1 295 -17 206 31 0 31 chr15 14206183 14206215 -71489539 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 372 119 0 0 chr15 14206731 14206790 -71488964 + (CA)n Simple_repeat Simple_repeat 2 60 0 403 267 89 14 chr15 14207081 14207227 -71488527 - MIR SINE MIR -16 246 90 2174 132 0 0 chr15 14207479 14207775 -71487979 - AluSx SINE Alu -16 296 1 332 257 125 37 chr15 14208397 14208533 -71487221 - MIR SINE MIR -67 195 48 198 0 0 0 chr15 14211139 14211161 -71484593 + (TA)n Simple_repeat Simple_repeat 2 23 0 2231 104 0 10 chr15 14211967 14212264 -71483490 + AluSg SINE Alu 1 294 -16 459 184 14 75 chr15 14212387 14212534 -71483220 - L1MB3 LINE L1 -2 6181 6044 23 33 0 0 chr15 14215048 14215078 -71480676 + AT_rich Low_complexity Low_complexity 1 30 0 370 332 63 10 chr15 14216207 14216412 -71479342 + L1MC4 LINE L1 7783 7998 -44 687 257 51 14 chr15 14216418 14216632 -71479122 + MIR SINE MIR 40 261 -1 661 302 28 12 chr15 14217105 14217353 -71478401 - MIR SINE MIR 0 262 11 295 214 10 117 chr15 14218327 14218430 -71477324 - MIR3 SINE MIR -6 202 111 327 295 26 0 chr15 14219211 14219289 -71476465 + L2 LINE L2 3163 3242 -30 1088 206 105 23 chr15 14420166 14420472 -71275282 + MER2 DNA MER2_type 14 344 -1 225 330 66 28 chr15 14420665 14420847 -71274907 + MER5A DNA MER1_type 1 189 0 492 164 67 0 chr15 14421289 14421453 -71274301 - L1PA16 LINE L1 -6 6160 5951 2036 146 3 0 chr15 14423124 14423412 -71272342 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr15 14423412 14423437 -71272317 + AT_rich Low_complexity Low_complexity 1 25 0 2232 85 0 7 chr15 14423473 14423756 -71271998 + AluSg SINE Alu 23 303 -7 750 268 79 45 chr15 14423990 14424344 -71271410 - L3 LINE CR1 -58 1519 1154 1819 158 3 31 chr15 14424420 14424737 -71271017 + AluJb SINE Alu 5 312 0 945 225 60 41 chr15 14424800 14425113 -71270641 + L1ME2 LINE L1 5837 6154 -10 1979 181 12 33 chr15 14425773 14426192 -71269562 + L1MC3 LINE L1 7355 7764 -21 743 216 36 0 chr15 14426464 14426631 -71269123 - L1ME LINE L1 -645 5517 5345 614 216 0 9 chr15 14426631 14426747 -71269007 - HERV16 LTR ERVL -3186 1810 1696 321 135 0 0 chr15 14426761 14426813 -71268941 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 509 202 124 0 chr15 14426813 14426942 -71268812 - AluJb SINE Alu -2 310 166 584 238 116 11 chr15 14427649 14427838 -71267916 + MER3 DNA MER1_type 1 209 0 267 103 0 0 chr15 14428659 14428698 -71267056 + (TG)n Simple_repeat Simple_repeat 2 40 0 827 148 9 124 chr15 14429565 14429775 -71265979 + MER5A DNA MER1_type 1 186 -3 633 133 0 10 chr15 14431468 14431566 -71264188 + AluS SINE Alu 2 98 -214 243 345 17 25 chr15 14433046 14433165 -71262589 - MIR SINE MIR -111 151 34 180 0 0 0 chr15 14434950 14434970 -71260784 + (A)n Simple_repeat Simple_repeat 1 20 0 648 269 34 10 chr15 14435346 14435554 -71260200 + MIR SINE MIR 15 227 -35 2264 94 14 0 chr15 14436035 14436332 -71259422 + AluSx SINE Alu 1 301 -11 642 234 136 0 chr15 14436749 14436933 -71258821 - L1ME3A LINE L1 -14 6156 5948 234 204 0 0 chr15 14436933 14436977 -71258777 - MLT1H LTR MaLR 0 549 506 3510 92 9 0 chr15 14437043 14437497 -71258257 - LTR22A LTR ERVK 0 458 1 235 253 51 25 chr15 14437535 14437614 -71258140 - MLT1H LTR MaLR -267 282 202 829 166 41 6 chr15 14437703 14437872 -71257882 + MER96B DNA MER1_type? 243 417 0 466 227 36 9 chr15 14437873 14437983 -71257771 - MLT1H LTR MaLR -436 113 1 1674 176 3 21 chr15 14438006 14438290 -71257464 + AluJo SINE Alu 3 281 -31 1109 264 100 0 chr15 14438295 14438636 -71257118 - L1ME3A LINE L1 -228 5942 5568 668 218 38 28 chr15 14438645 14438856 -71256898 - L1ME3A LINE L1 -1393 4753 4541 1360 203 77 59 chr15 14439011 14439400 -71256354 + MSTD LTR MaLR 1 396 0 383 230 118 7 chr15 14441710 14441845 -71253909 + MIR SINE MIR 47 196 -66 1639 234 128 30 chr15 14442204 14442742 -71253012 - MLT1E2 LTR MaLR -15 611 21 797 181 0 0 chr15 14443191 14443324 -71252430 - FLAM_C SINE Alu 0 133 1 3611 282 96 48 chr15 14443379 14443985 -71251769 - HERV16 LTR ERVL -3416 1580 1004 5894 125 14 13 chr15 14443985 14444887 -71250867 + MER4D LTR ERV1 1 903 0 3611 282 96 48 chr15 14444887 14445784 -71249970 - HERV16 LTR ERVL -3992 1004 5 587 241 26 0 chr15 14445800 14445916 -71249838 - LTR16A LTR ERVL -6 444 326 2244 114 0 16 chr15 14446044 14446351 -71249403 - AluSg SINE Alu -8 302 1 702 248 86 14 chr15 14446539 14446761 -71248993 + MIR SINE MIR 4 241 -21 183 42 0 0 chr15 14446828 14446852 -71248902 + (T)n Simple_repeat Simple_repeat 1 24 0 2392 66 3 0 chr15 14446875 14447352 -71248402 - AluY SINE Alu 0 478 1 427 247 153 80 chr15 14447385 14447737 -71248017 - L1ME LINE L1 -449 5672 5295 2761 80 0 25 chr15 14447766 14448130 -71247624 - THE1A LTR MaLR 0 355 1 330 224 11 32 chr15 14448218 14448339 -71247415 + L1MC4 LINE L1 7873 8042 0 388 306 64 50 chr15 14448968 14449187 -71246567 - MLT1I LTR MaLR -120 289 68 362 301 58 26 chr15 14449243 14449399 -71246355 + L2 LINE L2 3079 3239 -33 260 250 36 24 chr15 14450618 14450702 -71245052 - MIR SINE MIR 0 262 178 3332 139 89 12 chr15 14450718 14451316 -71244438 + MER39B LTR ERV1 6 649 -4 291 284 75 15 chr15 14451321 14451455 -71244299 - MIR SINE MIR -93 169 28 405 0 0 0 chr15 14453399 14453444 -71242310 + (CTG)n Simple_repeat Simple_repeat 1 45 0 915 270 70 39 chr15 14454429 14454844 -71240910 + L2 LINE L2 2863 3290 -23 885 119 56 25 chr15 14455342 14455502 -71240252 - L1MA9 LINE L1 -38 6274 6110 398 235 0 12 chr15 14455502 14455583 -71240171 + Tigger5 DNA MER2_type 1 80 -2243 1896 160 99 8 chr15 14455623 14455924 -71239830 - L1MA9 LINE L1 -200 6112 5769 204 40 0 0 chr15 14455924 14455949 -71239805 + (CA)n Simple_repeat Simple_repeat 1 25 0 1896 160 99 8 chr15 14455949 14456022 -71239732 - L1MA9 LINE L1 -543 5769 5704 213 211 0 0 chr15 14456113 14456151 -71239603 + A-rich Low_complexity Low_complexity 5 42 0 360 198 33 11 chr15 14456507 14456598 -71239156 + MER5B DNA MER1_type 72 164 -14 653 271 49 31 chr15 14456763 14456858 -71238896 + MLT1L LTR MaLR 387 479 -136 2047 106 0 46 chr15 14456858 14457160 -71238594 + AluSx SINE Alu 15 302 -10 653 271 49 31 chr15 14457160 14457289 -71238465 + MLT1L LTR MaLR 479 615 0 3735 140 8 81 chr15 14459607 14460337 -71235417 - LTR8 LTR ERV1 -14 677 1 340 302 32 0 chr15 14460619 14460745 -71235009 - MIR SINE MIR -43 219 90 307 238 21 105 chr15 14461162 14461305 -71234449 - MIR SINE MIR -101 161 31 359 224 66 113 chr15 14461457 14461664 -71234090 - MER34 LTR ERV1 0 542 421 353 94 0 0 chr15 14461891 14461944 -71233810 - MADE1 DNA Mariner 0 80 28 405 258 86 105 chr15 14462942 14463069 -71232685 - MIR SINE MIR 0 262 134 2020 142 13 7 chr15 14463069 14463379 -71232375 - AluSx SINE Alu 0 312 1 405 258 86 105 chr15 14463379 14463518 -71232236 - MIR SINE MIR -128 134 1 1853 173 16 3 chr15 14464129 14464436 -71231318 - AluJb SINE Alu -1 311 1 189 351 0 0 chr15 14464910 14464984 -71230770 - MIR3 SINE MIR -37 171 98 380 280 32 32 chr15 14465447 14465572 -71230182 - L2 LINE L2 0 3313 3189 1324 171 106 8 chr15 14466170 14466434 -71229320 - AluJb SINE Alu -12 290 1 872 193 60 0 chr15 14468686 14468852 -71226902 - FRAM SINE Alu -2 174 1 243 0 0 0 chr15 14468859 14468886 -71226868 + (TG)n Simple_repeat Simple_repeat 2 28 0 2036 130 17 0 chr15 14468886 14469187 -71226567 - AluSp SINE Alu -7 306 1 254 269 0 0 chr15 14469477 14469529 -71226225 + LTR30 LTR ERV1 1 52 -670 422 202 44 28 chr15 14469529 14469715 -71226039 + LTR12 LTR ERV1 100 270 -444 294 207 0 69 chr15 14469722 14469809 -71225945 + LTR30 LTR ERV1 544 624 -98 666 117 63 0 chr15 14469809 14469924 -71225830 + LTR12 LTR ERV1 359 582 -132 348 242 84 11 chr15 14469965 14470060 -71225694 - L2 LINE L2 -1 3271 3170 646 267 54 23 chr15 14470309 14470530 -71225224 + MIR SINE MIR 35 262 0 252 262 233 0 chr15 14471178 14471281 -71224473 + MIR SINE MIR 17 143 -65 2210 111 10 0 chr15 14471670 14471977 -71223777 - AluSx SINE Alu -2 310 1 737 308 43 26 chr15 14472014 14472475 -71223279 - L1ME3 LINE L1 -277 5885 5417 409 302 16 0 chr15 14473586 14473715 -71222039 - MER94 DNA DNA -1 133 3 366 314 102 0 chr15 14473756 14473893 -71221861 + L2 LINE L2 3122 3272 0 339 254 123 14 chr15 14474317 14474455 -71221299 - MIR3 SINE MIR -5 203 51 2320 117 0 0 chr15 14475867 14476174 -71219580 + AluSx SINE Alu 3 309 -3 2305 100 0 0 chr15 14476311 14476602 -71219152 + AluSq SINE Alu 1 291 -22 1292 179 53 17 chr15 14476630 14476932 -71218822 - MER33 DNA MER1_type -11 313 1 1010 234 58 92 chr15 14477179 14477594 -71218160 - MLT1I LTR MaLR -3 406 6 259 315 65 28 chr15 14478130 14478238 -71217516 - MIR SINE MIR -62 146 35 1698 170 36 88 chr15 14478439 14478541 -71217213 + MLT1B LTR MaLR 1 107 -283 2177 112 10 0 chr15 14478541 14478835 -71216919 + AluSq SINE Alu 1 297 -16 1698 170 36 88 chr15 14478835 14479143 -71216611 + MLT1B LTR MaLR 107 390 0 204 40 0 0 chr15 14479490 14479515 -71216239 + (CA)n Simple_repeat Simple_repeat 1 25 0 523 212 218 21 chr15 14479551 14479744 -71216010 - MIR SINE MIR 0 262 32 377 274 0 11 chr15 14479894 14479989 -71215765 + L2 LINE L2 3214 3307 -6 21 0 0 0 chr15 14480694 14480715 -71215039 + AT_rich Low_complexity Low_complexity 1 21 0 1960 123 10 35 chr15 14480733 14481043 -71214711 - AluJo SINE Alu -10 302 1 1203 257 85 40 chr15 14481087 14481336 -71214418 - Charlie7 DNA MER1_type -1890 722 486 1751 148 9 90 chr15 14481336 14481668 -71214086 - AluJo SINE Alu -7 305 1 1203 257 85 40 chr15 14481668 14481924 -71213830 - Charlie7 DNA MER1_type -2126 486 194 716 143 8 0 chr15 14482797 14482923 -71212831 + CT-rich Low_complexity Low_complexity 1 127 0 1997 120 48 0 chr15 14482923 14483214 -71212540 - AluSx SINE Alu -7 305 1 2013 142 3 22 chr15 14483788 14484106 -71211648 + AluJb SINE Alu 1 312 0 212 299 140 9 chr15 14484847 14484954 -71210800 - L2 LINE L2 -5 3267 3147 2230 117 0 3 chr15 14485283 14485582 -71210172 - AluSq SINE Alu -15 298 1 189 0 0 0 chr15 14486200 14486221 -71209533 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 554 253 93 0 chr15 14486432 14486594 -71209160 - MER5B DNA MER1_type 0 178 2 333 294 76 8 chr15 14487818 14487937 -71207817 + MIR3 SINE MIR 73 199 -9 293 359 124 4 chr15 14488442 14488676 -71207078 - HAL1 LINE L1 -8 2499 2238 1793 167 17 3 chr15 14491418 14491711 -71204043 - AluJb SINE Alu -15 297 1 1313 262 135 18 chr15 14491985 14492481 -71203273 - MLT1H1 LTR MaLR -1 554 1 805 297 84 53 chr15 14492614 14493200 -71202554 - MLT1L LTR MaLR -4 611 8 231 196 107 0 chr15 14494573 14494629 -71201125 - MIR SINE MIR -79 183 122 825 216 0 29 chr15 14494989 14495160 -71200594 - FRAM SINE Alu 0 166 1 208 257 40 27 chr15 14495907 14495981 -71199773 + MIR SINE MIR 170 244 -18 209 250 16 31 chr15 14496229 14496293 -71199461 - L2 LINE L2 -191 3081 3019 1895 188 147 28 chr15 14496591 14497060 -71198694 + MLT1F LTR MaLR 9 533 -9 546 235 117 43 chr15 14497070 14497432 -71198322 + MLT1H LTR MaLR 31 586 -9 234 274 88 83 chr15 14497626 14497830 -71197924 - L2 LINE L2 -635 2679 2475 405 263 68 8 chr15 14499458 14499591 -71196163 - MIR3 SINE MIR -41 167 27 4700 154 21 20 chr15 14500552 14501057 -71194697 - L1MA8 LINE L1 -2 6289 5781 1594 121 27 5 chr15 14501057 14501281 -71194473 + MER30 DNA MER1_type 1 229 -1 4700 154 21 20 chr15 14501281 14501615 -71194139 - L1MA8 LINE L1 -510 5781 5449 1366 257 56 9 chr15 14501720 14502062 -71193692 - ERVL-F LTR ERVL -3629 2135 1778 763 318 86 66 chr15 14502060 14502484 -71193270 - ERVL-F LTR ERVL -4734 1030 616 * 2385 81 0 7 chr15 14502484 14502794 -71192960 - AluY SINE Alu -3 308 1 1359 218 21 14 chr15 14502804 14503089 -71192665 - AluJo SINE Alu -25 287 1 763 318 86 66 chr15 14503089 14503352 -71192402 - ERVL-F LTR ERVL -5156 608 318 491 127 9 100 chr15 14503376 14503486 -71192268 - MLT2F LTR ERVL 0 663 564 784 288 45 36 chr15 14503571 14503929 -71191825 + L1MEd LINE L1 423 783 -5747 189 0 0 0 chr15 14503971 14503992 -71191762 + (A)n Simple_repeat Simple_repeat 1 21 0 316 326 28 35 chr15 14503995 14504136 -71191618 + L1MEd LINE L1 813 952 -5578 555 306 24 45 chr15 14504483 14504643 -71191111 + L1MEd LINE L1 2454 2616 -3924 2181 109 19 22 chr15 14504643 14504956 -71190798 + AluSx SINE Alu 1 312 0 555 306 24 45 chr15 14504956 14505481 -71190273 + L1MEd LINE L1 2616 3123 -3417 385 283 0 11 chr15 14505482 14505574 -71190180 - MER5B DNA MER1_type -87 91 1 952 114 0 0 chr15 14505886 14506009 -71189745 + FLAM_C SINE Alu 1 123 -20 225 235 0 20 chr15 14506744 14506795 -71188959 + L2 LINE L2 3136 3185 -87 807 254 142 44 chr15 14506816 14507182 -71188572 + MLT1I LTR MaLR 7 408 -1 314 217 33 0 chr15 14507182 14507242 -71188512 + L2 LINE L2 3202 3263 -9 188 279 0 0 chr15 14507290 14507333 -71188421 + L2 LINE L2 3222 3264 -8 1643 182 0 32 chr15 14507356 14507664 -71188090 - AluJo SINE Alu -14 298 1 457 338 82 24 chr15 14508653 14508938 -71186816 + L2 LINE L2 2768 3066 -247 2052 235 67 23 chr15 14509279 14509879 -71185875 + L1MC4a LINE L1 5195 5315 -831 2243 117 85 20 chr15 14509879 14510221 -71185533 - THE1B LTR MaLR 0 364 1 2052 235 67 23 chr15 14510221 14510270 -71185484 + L1MC4a LINE L1 5315 5360 -786 289 291 103 0 chr15 14510887 14511004 -71184750 - LTR16C LTR ERVL -87 404 276 430 306 28 22 chr15 14511053 14511233 -71184521 - L1MC4a LINE L1 -1880 5928 5748 494 298 80 31 chr15 14512783 14513117 -71182637 - L1MC4a LINE L1 -688 5466 5150 219 114 0 0 chr15 14513117 14513152 -71182602 + (TA)n Simple_repeat Simple_repeat 1 35 0 494 298 80 31 chr15 14513152 14513689 -71182065 - L1MC4a LINE L1 -1004 5150 4567 21 0 0 0 chr15 14513737 14513758 -71181996 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 14513839 14513860 -71181894 + AT_rich Low_complexity Low_complexity 1 21 0 783 140 9 0 chr15 14514687 14514801 -71180953 + AluJb SINE Alu 2 116 -196 1139 137 55 6 chr15 14514877 14515060 -71180694 + AluJb SINE Alu 112 303 -9 1013 116 7 0 chr15 14515101 14515239 -71180515 - MER20 DNA MER1_type -48 171 33 1165 216 14 5 chr15 14516728 14516950 -71178804 - MER58A DNA MER1_type 0 224 1 327 256 25 106 chr15 14517655 14517854 -71177900 - L2 LINE L2 -119 3194 3012 384 263 59 63 chr15 14517962 14518296 -71177458 + L1ME4a LINE L1 5784 6110 -11 736 160 59 53 chr15 14518609 14518796 -71176958 - MER53 DNA DNA -1 188 1 519 296 53 6 chr15 14519133 14519302 -71176452 + MER5B DNA MER1_type 1 177 -1 546 196 20 0 chr15 14519410 14519512 -71176242 - MER5A DNA MER1_type -77 112 9 398 200 132 93 chr15 14520037 14520250 -71175504 + MIR SINE MIR 28 262 0 282 351 108 5 chr15 14521225 14521410 -71174344 - MIR SINE MIR 0 262 59 4056 29 0 4 chr15 14521509 14521956 -71173798 + L1PA5 LINE L1 5703 6149 -5 207 0 0 0 chr15 14521956 14521979 -71173775 + (TA)n Simple_repeat Simple_repeat 2 24 0 577 242 39 0 chr15 14522266 14522419 -71173335 + MER103 DNA DNA 7 165 -1 347 212 40 50 chr15 14522622 14522721 -71173033 - MLT1G LTR MaLR -290 300 203 233 48 71 0 chr15 14522740 14522782 -71172972 + MER5A DNA MER1_type 68 112 -77 779 278 206 19 chr15 14522901 14523388 -71172366 - MLT1H1 LTR MaLR -8 547 1 686 312 50 53 chr15 14523605 14524245 -71171509 - L2 LINE L2 -11 3302 2666 2149 121 0 7 chr15 14524245 14524542 -71171212 + AluSx SINE Alu 1 295 -17 686 312 50 53 chr15 14524542 14524634 -71171120 - L2 LINE L2 -647 2666 2575 257 284 15 0 chr15 14526101 14526168 -71169586 + GA-rich Low_complexity Low_complexity 6 73 0 1383 141 74 84 chr15 14526296 14526594 -71169160 + AluJo SINE Alu 1 295 -17 2565 11 0 0 chr15 14527488 14527765 -71167989 + AluYa5 SINE Alu 29 305 -6 413 273 118 11 chr15 14528038 14528237 -71167517 + MIR SINE MIR 37 255 -7 213 301 41 0 chr15 14528454 14528527 -71167227 - MIR3 SINE MIR -23 185 110 520 287 10 41 chr15 14529419 14529614 -71166140 - LTR16B LTR ERVL 0 464 276 906 114 8 0 chr15 14529767 14529898 -71165856 - AluSp/q SINE Alu -12 301 170 2218 113 36 0 chr15 14530484 14530785 -71164969 - AluSx SINE Alu 0 312 1 237 325 92 8 chr15 14530825 14530945 -71164809 - LTR67 LTR ERVL -76 481 352 194 0 0 37 chr15 14531502 14531529 -71164225 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2247 74 0 4 chr15 14532372 14532643 -71163111 + AluY SINE Alu 3 272 -39 1052 185 39 13 chr15 14532721 14532953 -71162801 - L1MB3 LINE L1 -5 6178 5941 215 316 52 96 chr15 14533699 14533835 -71161919 + L2 LINE L2 3137 3266 -6 * 357 257 119 0 chr15 14533803 14533904 -71161850 - L2 LINE L2 0 3313 3201 441 103 0 0 chr15 14536164 14536232 -71159522 + (CA)n Simple_repeat Simple_repeat 2 69 0 450 276 209 24 chr15 14536612 14536822 -71158932 - MIR SINE MIR -1 261 13 340 290 46 0 chr15 14537117 14537248 -71158506 + MIR SINE MIR 125 261 -1 211 268 86 35 chr15 14538011 14538180 -71157574 - MIR3 SINE MIR -70 192 15 493 273 20 0 chr15 14538318 14538468 -71157286 - MER103 DNA DNA -13 153 1 2286 90 0 27 chr15 14538993 14539294 -71156460 + AluSg SINE Alu 1 293 -17 253 179 0 0 chr15 14539636 14539675 -71156079 + MER34 LTR ERV1 7 45 -497 1982 211 57 13 chr15 14539678 14540134 -71155620 + MER39 LTR ERV1 232 707 0 27 0 0 0 chr15 14540955 14540982 -71154772 + AT_rich Low_complexity Low_complexity 1 27 0 282 241 38 0 chr15 14540999 14541078 -71154676 - MIR SINE MIR -77 185 104 224 220 0 11 chr15 14541204 14541232 -71154522 + (CA)n Simple_repeat Simple_repeat 1 28 -62 1857 160 95 45 chr15 14541232 14541675 -71154079 - MER31B LTR ERV1 -1 465 1 224 220 0 11 chr15 14541675 14541737 -71154017 + (CA)n Simple_repeat Simple_repeat 28 90 0 1375 200 27 37 chr15 14541793 14542093 -71153661 + AluJo SINE Alu 1 297 -15 2061 136 57 0 chr15 14542248 14542580 -71153174 - MER34B LTR ERV1 0 565 215 404 241 173 0 chr15 14542580 14542713 -71153041 - MER57A LTR ERV1 -53 350 195 1226 189 46 18 chr15 14542739 14543069 -71152685 - MER34B LTR ERV1 -281 222 1 892 224 57 99 chr15 14543476 14543794 -71151960 + LTR37A LTR ERV1 19 320 -106 2461 55 7 0 chr15 14543794 14544084 -71151670 - AluY SINE Alu -19 292 1 892 224 57 99 chr15 14544084 14544148 -71151606 + LTR37A LTR ERV1 320 385 -41 1134 187 66 116 chr15 14544191 14544571 -71151183 - MER39 LTR ERV1 -41 666 306 243 130 0 22 chr15 14544702 14544748 -71151006 + LTR37A LTR ERV1 382 426 0 1339 160 112 75 chr15 14545468 14545799 -71149955 + MER2 DNA MER2_type 1 343 -1 314 259 12 12 chr15 14545849 14545934 -71149820 + MER5A DNA MER1_type 4 88 -101 285 260 0 13 chr15 14545878 14545955 -71149799 - MER5A DNA MER1_type -22 167 92 * 473 296 15 0 chr15 14546249 14546384 -71149370 + MIR SINE MIR 2 138 -124 2778 121 100 55 chr15 14546390 14546950 -71148804 + MER34C LTR ERV1 1 585 0 218 292 22 34 chr15 14547012 14547101 -71148653 + MIR SINE MIR 175 262 0 2170 112 20 0 chr15 14547142 14547445 -71148309 + AluSq SINE Alu 1 309 -4 1708 171 42 0 chr15 14548394 14548681 -71147073 + AluJo SINE Alu 1 299 -13 243 235 30 68 chr15 14548697 14548829 -71146925 + MIR SINE MIR 69 195 -67 682 262 65 65 chr15 14548992 14549359 -71146395 - MLT1L LTR MaLR -248 367 1 202 268 84 0 chr15 14549475 14549546 -71146208 - MIR SINE MIR -49 213 137 5209 31 5 0 chr15 14549555 14550163 -71145591 - L1PA4 LINE L1 -3 6152 5542 5732 32 0 0 chr15 14550164 14550841 -71144913 + L1P LINE L1 2250 2926 -3220 221 298 202 11 chr15 14550942 14551036 -71144718 - MIR SINE MIR -124 138 27 298 244 24 12 chr15 14552588 14552670 -71143084 + MIR SINE MIR 69 151 -57 21 36 0 0 chr15 14552690 14552718 -71143036 + AT_rich Low_complexity Low_complexity 1 28 0 185 211 0 0 chr15 14553266 14553304 -71142450 - MIR3 SINE MIR -49 159 122 426 243 97 83 chr15 14553315 14553497 -71142257 + L1ME4a LINE L1 5590 5779 -342 2075 62 12 4 chr15 14553497 14553753 -71142001 - AluY SINE Alu -4 307 50 426 243 97 83 chr15 14553753 14553858 -71141896 + L1ME4a LINE L1 5779 5881 -240 697 170 0 0 chr15 14554351 14554457 -71141297 - LTR26B LTR ERV1 0 531 426 3084 117 16 43 chr15 14554457 14555075 -71140679 - MER4B LTR ERV1 0 779 1 1216 131 68 1 chr15 14555075 14555288 -71140466 - LTR26B LTR ERV1 -102 429 235 227 300 0 0 chr15 14555302 14555372 -71140382 + (CA)n Simple_repeat Simple_repeat 1 70 0 2427 95 0 3 chr15 14556359 14556665 -71139089 - AluSq SINE Alu -8 305 1 400 275 101 34 chr15 14559561 14559739 -71136015 + MIR SINE MIR 2 191 -71 41636 69 4 3 chr15 14559752 14565888 -71129866 - L1PA5 LINE L1 -6 6148 5 244 157 20 0 chr15 14566355 14566406 -71129348 - L1MC1 LINE L1 -1 6332 6281 1589 172 4 0 chr15 14566439 14566706 -71129048 - L1MC1 LINE L1 -45 6288 6021 362 147 207 164 chr15 14566984 14567159 -71128595 - ORSL DNA AcHobo 0 275 86 1896 165 6 22 chr15 14567159 14567475 -71128279 - AluJb SINE Alu -1 311 1 362 147 207 164 chr15 14567475 14567531 -71128223 - ORSL DNA AcHobo -189 86 34 399 310 105 0 chr15 14569727 14569898 -71125856 - MIR SINE MIR -72 190 2 555 241 47 51 chr15 14570237 14570490 -71125264 - MER112 DNA MER1_type -2 254 3 359 265 10 0 chr15 14570561 14570659 -71125095 + L2 LINE L2 2680 2778 -536 254 265 10 41 chr15 14571457 14571555 -71124199 + L2 LINE L2 3161 3255 -58 402 333 115 11 chr15 14571889 14572159 -71123595 - L2 LINE L2 -463 2851 2554 32800 100 13 50 chr15 14572588 14578992 -71116762 + L1PA7 LINE L1 1 6459 -10 210 247 0 47 chr15 14579457 14579542 -71116212 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 399 282 118 35 chr15 14580855 14581025 -71114729 + MIR SINE MIR 35 218 -44 1422 164 5 0 chr15 14632196 14632416 -71063338 - MLT2B2 LTR ERVL -294 221 1 662 310 270 19 chr15 14633011 14633682 -71062072 + L3 LINE CR1 728 1566 -11 951 303 85 6 chr15 14634845 14635175 -71060579 - LTR33 LTR ERVL -165 356 1 2362 180 0 5 chr15 14635781 14636148 -71059606 - MLT1A1 LTR MaLR 0 365 1 294 163 50 75 chr15 14636301 14636335 -71059419 - MLT1H1 LTR MaLR 0 555 522 1887 184 31 20 chr15 14636335 14636693 -71059061 - MLT1A1 LTR MaLR -3 362 1 294 163 50 75 chr15 14636693 14636738 -71059016 - MLT1H1 LTR MaLR -33 522 478 282 260 10 0 chr15 14637003 14637099 -71058655 + L1MEc LINE L1 1619 1715 -5006 455 298 116 31 chr15 14637139 14637616 -71058138 + L1MEc LINE L1 2400 2936 -3604 6181 143 113 8 chr15 14637616 14638730 -71057024 + Tigger3b DNA MER2_type 1 1231 0 455 298 116 31 chr15 14638730 14638817 -71056937 + L1MEc LINE L1 2936 3014 -3526 232 315 34 62 chr15 14638989 14639135 -71056619 - MLT1I LTR MaLR -169 240 99 563 279 141 46 chr15 14639339 14639951 -71055803 + L1MEc LINE L1 3238 3907 -2633 1921 149 30 0 chr15 14640046 14640341 -71055413 + AluSx SINE Alu 1 304 -8 200 222 0 0 chr15 14640541 14640586 -71055168 + (TA)n Simple_repeat Simple_repeat 2 46 0 2069 95 4 0 chr15 14641391 14641665 -71054089 - AluY SINE Alu -36 275 1 24 0 0 0 chr15 14641665 14641689 -71054065 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 14642910 14642938 -71052816 + AT_rich Low_complexity Low_complexity 1 28 0 201 241 98 107 chr15 14643142 14643254 -71052500 - L2 LINE L2 -1 3271 3161 184 281 123 0 chr15 14643946 14644003 -71051751 + L2 LINE L2 3169 3232 -40 181 364 133 7 chr15 14645448 14645599 -71050155 + MIR3 SINE MIR 20 189 -19 528 241 18 0 chr15 14645825 14645937 -71049817 + MER81 DNA DNA 1 114 0 2402 100 7 0 chr15 14646239 14646549 -71049205 - AluSx SINE Alu 0 312 1 382 265 163 34 chr15 14648300 14648447 -71047307 + MIR3 SINE MIR 33 198 -10 2596 140 13 75 chr15 14649196 14649719 -71046035 - L1MC3 LINE L1 0 7785 7295 1034 154 86 45 chr15 14649858 14650078 -71045676 - L1MC3 LINE L1 -501 7284 7056 320 352 162 23 chr15 14650415 14651069 -71044685 + L2 LINE L2 2000 2744 -570 645 305 47 0 chr15 14651774 14651987 -71043767 - MIR SINE MIR -32 230 8 2818 6 0 28 chr15 14652019 14652340 -71043414 + AluYb8 SINE Alu 1 312 -6 323 269 54 78 chr15 14653366 14653533 -71042221 + MIR SINE MIR 45 207 -55 432 299 106 27 chr15 14654525 14654710 -71041044 + MIR3 SINE MIR 3 203 -59 854 215 77 19 chr15 14654828 14655037 -71040717 - MER45C DNA AcHobo 0 953 733 280 288 15 0 chr15 14655064 14655130 -71040624 - MER45C DNA AcHobo -299 654 588 1918 178 125 18 chr15 14655148 14655531 -71040223 + MSTB LTR MaLR 1 424 -2 799 271 82 22 chr15 14655738 14656007 -71039747 - MER45C DNA AcHobo -666 287 3 193 306 180 9 chr15 14656033 14656144 -71039610 - MIR SINE MIR -88 174 45 1390 108 51 0 chr15 14656903 14657117 -71038637 + LTR39 LTR ERV1 1 225 -558 2880 165 114 13 chr15 14657117 14657663 -71038091 - LTR36 LTR ERV1 0 611 11 3518 154 13 4 chr15 14657671 14658228 -71037526 + LTR39 LTR ERV1 221 782 -1 399 287 201 6 chr15 14658905 14659079 -71036675 + MIR SINE MIR 29 236 -26 240 35 0 0 chr15 14660081 14660110 -71035644 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 343 289 82 35 chr15 14661224 14661377 -71034377 - MIR SINE MIR -58 150 42 192 231 0 0 chr15 14661400 14661439 -71034315 + MIR SINE MIR 105 143 -65 700 251 17 28 chr15 14662255 14662434 -71033320 + MER5B DNA MER1_type 1 177 -1 501 295 61 7 chr15 14662977 14663199 -71032555 + MIR SINE MIR 24 255 -7 271 170 21 0 chr15 14663940 14663987 -71031767 - L2 LINE L2 -18 3254 3207 2447 68 0 0 chr15 14665196 14665489 -71030265 + AluY SINE Alu 1 293 -18 700 159 26 0 chr15 14665686 14665799 -71029955 - FLAM_C SINE Alu -1 142 27 50 31 0 0 chr15 14666861 14666925 -71028829 + AT_rich Low_complexity Low_complexity 1 64 0 291 239 74 37 chr15 14666929 14667092 -71028662 + MER113 DNA MER1_type? 2 170 -351 229 250 31 16 chr15 14667127 14667191 -71028563 + MER113 DNA MER1_type? 454 518 -3 246 32 0 0 chr15 14668604 14668635 -71027119 + (TG)n Simple_repeat Simple_repeat 2 32 0 347 261 68 50 chr15 14669449 14669558 -71026196 + MIR3 SINE MIR 44 158 -50 1520 218 3 7 chr15 14669558 14669847 -71025907 - AluJo SINE Alu -23 289 2 347 261 68 50 chr15 14669847 14669898 -71025856 + MIR3 SINE MIR 158 207 -1 476 276 26 0 chr15 14670024 14670140 -71025614 + MIR SINE MIR 59 177 -85 718 253 0 22 chr15 14671788 14671970 -71023784 + MER5B DNA MER1_type 1 178 0 291 54 0 0 chr15 14672128 14672165 -71023589 + (CA)n Simple_repeat Simple_repeat 2 38 0 465 307 80 7 chr15 14672302 14672452 -71023302 + MIR3 SINE MIR 32 192 -16 205 129 0 0 chr15 14672618 14672649 -71023105 + MIR SINE MIR 47 77 -131 1634 157 23 20 chr15 14672752 14673058 -71022696 + AluJb SINE Alu 1 307 -5 353 283 107 23 chr15 14673804 14673981 -71021773 + MER117 DNA MER1_type 1 192 -5 205 254 91 0 chr15 14675158 14675213 -71020541 - L3 LINE CR1 -7 1570 1511 211 182 0 105 chr15 14675502 14675568 -71020186 - MIR SINE MIR -60 148 102 21 36 0 0 chr15 14675817 14675845 -71019909 + AT_rich Low_complexity Low_complexity 1 28 0 37673 91 14 8 chr15 14675845 14681940 -71013814 - L1PA6 LINE L1 -13 6141 11 285 364 31 16 chr15 14682662 14682791 -71012963 - MIR SINE MIR -108 154 24 1755 273 33 27 chr15 14683057 14683570 -71012184 + LTR33 LTR ERVL 3 518 -3 243 317 3 26 chr15 14684130 14684244 -71011510 + MIR SINE MIR 1 110 -98 388 296 30 7 chr15 14684475 14684610 -71011144 + MERVL LTR ERVL 3201 3338 -2147 681 269 77 24 chr15 14684620 14684974 -71010780 - MLT1C LTR MaLR -2 465 78 43350 37 23 1 chr15 14684980 14690994 -71004760 + L1PA3 LINE L1 4 6155 0 1724 91 0 5 chr15 14691084 14691305 -71004449 - L1PA8 LINE L1 -14 6158 5939 452 287 41 0 chr15 14691353 14691475 -71004279 + MERVL LTR ERVL 3383 3509 -2255 1202 349 88 11 chr15 14691518 14692268 -71003486 + MERVL LTR ERVL 3544 4351 -1303 717 371 57 14 chr15 14692504 14693135 -71002619 + MERVL LTR ERVL 4682 5339 -315 1841 141 57 3 chr15 14693426 14693723 -71002031 - AluSq SINE Alu 0 313 1 787 271 72 12 chr15 14693725 14694130 -71001624 + LTR33 LTR ERVL 31 514 -7 370 316 44 0 chr15 14694495 14694609 -71001145 - L2 LINE L2 -2 3311 3193 194 196 0 89 chr15 14697184 14697240 -70998514 + L2 LINE L2 3262 3312 -1 1048 127 0 11 chr15 14697341 14697380 -70998374 + (TTCC)n Simple_repeat Simple_repeat 1 217 0 1048 127 0 11 chr15 14697380 14697561 -70998193 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2822 222 87 33 chr15 14698881 14699654 -70996100 - L1ME1 LINE L1 -18 6148 5327 234 0 0 0 chr15 14699654 14699680 -70996074 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2822 222 87 33 chr15 14699680 14699721 -70996033 - L1ME1 LINE L1 -839 5327 5290 * 33174 104 10 56 chr15 14699720 14706153 -70989601 - L1PA7 LINE L1 -20 6134 12 467 123 49 0 chr15 14706187 14706268 -70989486 - L1MA6 LINE L1 0 6300 6216 260 191 36 24 chr15 14706329 14706346 -70989408 - L1ME1 LINE L1 -870 5276 5261 1809 75 34 41 chr15 14706346 14706614 -70989140 - L1MA1 LINE L1 0 6302 6037 260 191 36 24 chr15 14706614 14706680 -70989074 - L1ME1 LINE L1 -885 5261 5192 1320 286 78 13 chr15 14706858 14707320 -70988434 - L2 LINE L2 0 3313 2822 1990 199 54 7 chr15 14707346 14707753 -70988001 + MER63B DNA MER1_type 1 426 -10 3399 256 94 35 chr15 14707766 14708963 -70986791 - L2 LINE L2 -481 2833 1567 379 354 75 54 chr15 14709121 14709548 -70986206 + L2 LINE L2 1261 1696 -1618 208 344 53 26 chr15 14709827 14709978 -70985776 - L3b LINE CR1 -208 1375 1221 275 264 172 0 chr15 14710892 14710979 -70984775 + MIR3 SINE MIR 100 201 -7 502 325 98 20 chr15 14711916 14712211 -70983543 - MLT1I LTR MaLR -11 398 81 400 357 53 65 chr15 14713387 14713743 -70982011 - L2 LINE L2 0 3272 2921 726 279 44 24 chr15 14713955 14714206 -70981548 + MIR SINE MIR 1 256 -6 2037 35 0 0 chr15 14714290 14714521 -70981233 - L1PA4 LINE L1 0 6155 5925 207 0 0 0 chr15 14714783 14714806 -70980948 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 255 20 41 chr15 14715111 14715139 -70980615 + LTR67 LTR ERVL 457 551 -5 267 261 14 0 chr15 14715139 14715208 -70980546 + MLT1K LTR MaLR 513 582 -6 219 339 70 17 chr15 14715453 14715568 -70980186 - L2 LINE L2 -223 3049 2929 183 179 103 0 chr15 14715577 14715616 -70980138 - L2 LINE L2 -6 3266 3224 7262 78 3 1 chr15 14715728 14717026 -70978728 + L1PA8 LINE L1 4871 6170 -2 290 125 12 113 chr15 14717084 14717164 -70978590 - L1M4 LINE L1 -1899 4247 4176 297 254 173 0 chr15 14717210 14717320 -70978434 + L2 LINE L2 1214 1342 -1972 1205 45 0 32 chr15 14717420 14717576 -70978178 + L1PA6 LINE L1 6004 6154 0 948 138 7 0 chr15 14718001 14718153 -70977601 - L1MA4 LINE L1 -8 6292 6140 243 250 59 15 chr15 14718259 14718327 -70977427 + MIR SINE MIR 118 188 -74 444 304 78 70 chr15 14719752 14720097 -70975657 + L2 LINE L2 2922 3269 -3 457 360 101 29 chr15 14720189 14720597 -70975157 + L3b LINE CR1 1108 1544 -39 1990 199 70 41 chr15 14722927 14723410 -70972344 - MLT1D LTR MaLR -8 497 1 514 342 53 13 chr15 14723558 14723786 -70971968 + MIR SINE MIR 18 254 -8 290 95 0 0 chr15 14723786 14723828 -70971926 + MADE1 DNA Mariner 39 80 0 605 242 105 0 chr15 14724922 14725075 -70970679 - MLT1H LTR MaLR 0 549 381 948 253 20 29 chr15 14725110 14725355 -70970399 - MLT1H LTR MaLR -247 302 60 27 29 0 0 chr15 14725428 14725462 -70970292 + AT_rich Low_complexity Low_complexity 1 34 0 2761 97 16 11 chr15 14725594 14725967 -70969787 + THE1C LTR MaLR 1 375 0 2347 190 33 2 chr15 14726552 14726978 -70968776 - L1MB1 LINE L1 -1 6167 5729 2417 133 11 49 chr15 14726992 14727445 -70968309 + L1MB1 LINE L1 5296 5731 -437 227 238 0 32 chr15 14728388 14728451 -70967303 + L2 LINE L2 3201 3261 -11 331 292 85 15 chr15 14732232 14732362 -70963392 + MIR SINE MIR 124 262 0 688 264 102 0 chr15 14732837 14733034 -70962720 - MIR SINE MIR -1 261 45 233 237 84 99 chr15 14733334 14733465 -70962289 - MIR3 SINE MIR -46 162 34 1571 110 0 0 chr15 14733569 14733769 -70961985 + AluSg/x SINE Alu 98 297 -13 13880 91 10 3 chr15 14734375 14736975 -70958779 - L1PA7 LINE L1 0 6154 3523 2014 99 0 37 chr15 14737049 14737343 -70958411 - AluY SINE Alu -5 306 24 44521 43 3 2 chr15 14737739 14743882 -70951872 - L1PA3 LINE L1 0 6155 2 192 297 33 33 chr15 14744176 14744267 -70951487 - L2 LINE L2 0 3313 3223 2250 87 0 20 chr15 14744315 14744613 -70951141 - AluY SINE Alu -19 292 1 322 309 64 0 chr15 14744793 14744903 -70950851 + L2 LINE L2 3160 3276 -37 2217 132 0 0 chr15 14746463 14746767 -70948987 - AluSc SINE Alu -5 304 1 1202 154 0 0 chr15 14747942 14748117 -70947637 + AluJo SINE Alu 1 175 -137 188 328 60 15 chr15 14748241 14748308 -70947446 - MIR3 SINE MIR -42 166 97 1888 170 3 3 chr15 14748753 14749114 -70946640 - AluJo SINE Alu 0 361 1 2530 67 0 6 chr15 14749663 14749975 -70945779 - AluY SINE Alu 0 311 2 24 32 0 0 chr15 14750358 14750389 -70945365 + AT_rich Low_complexity Low_complexity 1 31 0 2706 49 0 0 chr15 14750835 14751143 -70944611 + AluY SINE Alu 1 308 -3 28 0 0 0 chr15 14751404 14751432 -70944322 + AT_rich Low_complexity Low_complexity 1 28 0 925 284 52 52 chr15 14751943 14752439 -70943315 - L2 LINE L2 0 3313 2818 1594 234 64 51 chr15 14752481 14752951 -70942803 - MER45C DNA AcHobo 0 953 478 1401 274 18 0 chr15 14753010 14753349 -70942405 - MER45C DNA AcHobo -600 353 9 371 254 239 24 chr15 14753356 14753453 -70942301 - L2 LINE L2 -518 2796 2721 2119 128 0 3 chr15 14753453 14753758 -70941996 + AluSx SINE Alu 1 304 -8 371 254 239 24 chr15 14753758 14753869 -70941885 - L2 LINE L2 -593 2721 2543 21 0 0 0 chr15 14754100 14754121 -70941633 + AT_rich Low_complexity Low_complexity 1 21 0 9515 45 1 9 chr15 14754342 14754390 -70941364 + L1P LINE L1 4061 4108 -2038 7724 39 23 0 chr15 14754390 14755319 -70940435 - L1PA5 LINE L1 0 6154 5224 9515 45 1 9 chr15 14755319 14756436 -70939318 + L1PA5 LINE L1 4108 5217 -929 298 260 9 151 chr15 14758612 14758831 -70936923 - MIR3 SINE MIR -3 205 18 547 322 105 30 chr15 14759868 14760163 -70935591 - L2 LINE L2 -17 3255 2939 530 69 97 0 chr15 14762198 14762270 -70933484 + MADE1 DNA Mariner 2 80 0 701 238 52 43 chr15 14763661 14763833 -70931921 - L2 LINE L2 -1 3312 3136 1261 232 42 62 chr15 14763833 14764234 -70931520 + MLT2C1 LTR ERVL 1 393 -4 701 238 52 43 chr15 14764234 14764292 -70931462 - L2 LINE L2 -177 3136 3080 245 271 49 62 chr15 14765461 14765605 -70930149 - L2 LINE L2 0 3313 3172 218 328 0 0 chr15 14765947 14766008 -70929746 + L2 LINE L2 3249 3309 -4 279 81 0 0 chr15 14766465 14766502 -70929252 - AluSp SINE Alu -133 170 134 21 57 0 0 chr15 14766832 14766867 -70928887 + AT_rich Low_complexity Low_complexity 1 35 0 285 29 0 0 chr15 14766970 14767004 -70928750 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 299 58 19 chr15 14767307 14767461 -70928293 - MIR SINE MIR -4 258 99 417 356 78 7 chr15 14769020 14769304 -70926450 + L2 LINE L2 2298 2601 -713 1320 210 45 0 chr15 14770632 14770875 -70924879 + Tigger7 DNA MER2_type 2 255 -2232 303 256 26 0 chr15 14770873 14770951 -70924803 + Tigger7 DNA MER2_type 2408 2487 0 * 5377 141 40 0 chr15 14772106 14772984 -70922770 - L1MA4 LINE L1 0 6300 5388 521 200 0 92 chr15 14773134 14773264 -70922490 - MLT1I LTR MaLR 0 409 292 2995 171 5 56 chr15 14773332 14773905 -70921849 + MLT2B3 LTR ERVL 3 546 -8 317 91 0 0 chr15 14773948 14773992 -70921762 + tRNA-Cys-TGC tRNA tRNA 2 45 -30 523 138 53 32 chr15 14774089 14774183 -70921571 - L1MC2 LINE L1 -13 6331 6236 1481 188 14 17 chr15 14774234 14774521 -70921233 - AluJb SINE Alu -26 286 1 360 100 22 133 chr15 14774522 14774612 -70921142 - L1MC2 LINE L1 -1931 5854 5775 510 254 34 0 chr15 14774623 14774741 -70921013 - MLT1I LTR MaLR -277 132 11 2784 155 9 7 chr15 14775041 14775474 -70920280 + MER57B LTR ERV1 1 434 0 1151 214 255 23 chr15 14775571 14776153 -70919601 - LTR50 LTR ERVL -43 683 1 349 306 155 27 chr15 14776705 14776924 -70918830 + MIR SINE MIR 6 252 -10 444 222 196 26 chr15 14777987 14778181 -70917573 - MLT1L LTR MaLR -46 569 343 411 207 24 134 chr15 14778350 14778401 -70917353 - MIR SINE MIR 0 262 207 1970 131 0 0 chr15 14778401 14778698 -70917056 - AluSx SINE Alu 0 307 11 411 207 24 134 chr15 14778698 14778809 -70916945 - MIR SINE MIR -55 207 117 574 242 51 66 chr15 14778810 14779066 -70916688 - MER112 DNA MER1_type -1 259 8 452 260 58 0 chr15 14779077 14779181 -70916573 - MIR SINE MIR -151 111 2 218 305 182 13 chr15 14779505 14779659 -70916095 - MIR3 SINE MIR -13 195 16 210 71 0 0 chr15 14779916 14779944 -70915810 + (T)n Simple_repeat Simple_repeat 1 28 0 206 313 0 50 chr15 14781196 14781276 -70914478 + MIR3 SINE MIR 10 85 -123 359 117 39 71 chr15 14781328 14781482 -70914272 + (TA)n Simple_repeat Simple_repeat 2 150 0 257 250 171 29 chr15 14781482 14781622 -70914132 - MIR SINE MIR -101 161 2 * 289 266 94 31 chr15 14781622 14781737 -70914017 + MIR3 SINE MIR 79 201 -7 7072 69 25 0 chr15 14783497 14784640 -70911114 + L1PA8 LINE L1 5006 6170 -2 290 125 12 113 chr15 14784698 14784778 -70910976 - L1M4 LINE L1 -1899 4247 4176 832 246 102 35 chr15 14784824 14785109 -70910645 + L2 LINE L2 1214 1517 -1797 961 296 141 22 chr15 14785110 14785941 -70909813 - L1M4 LINE L1 -2327 3819 2890 36 40 0 0 chr15 14786134 14786184 -70909570 + AT_rich Low_complexity Low_complexity 1 50 0 851 222 19 3 chr15 14786291 14786559 -70909195 - MLT1A1 LTR MaLR 0 365 1 226 203 177 63 chr15 14787232 14787390 -70908364 - L1ME4a LINE L1 -18 6103 5928 1797 165 28 3 chr15 14787682 14787973 -70907781 + AluSx SINE Alu 1 298 -14 1361 266 81 16 chr15 14838538 14839223 -70856531 + L2 LINE L2 2587 3313 0 2035 47 16 0 chr15 14840005 14840262 -70855492 - L1PA7 LINE L1 -2 6152 5892 858 108 0 0 chr15 14840527 14840647 -70855107 + AluSq/x SINE Alu 1 120 -193 1281 88 0 0 chr15 14842283 14842442 -70853312 - AluSc SINE Alu -150 159 1 254 380 0 0 chr15 14843080 14843222 -70852532 - MER117 DNA MER1_type 0 197 56 877 137 0 0 chr15 14843433 14843572 -70852182 + MER4B LTR ERV1 1 139 -471 193 250 0 0 chr15 14844322 14844362 -70851392 - L2 LINE L2 -253 3060 3021 2163 73 0 7 chr15 14844362 14844635 -70851119 - AluY SINE Alu -10 301 31 888 113 14 0 chr15 14844635 14844776 -70850978 - L1PA15-16 LINE L1 -4976 1873 1731 1257 232 21 18 chr15 14844785 14845112 -70850642 - L1PA15-16 LINE L1 -5257 1592 1265 1202 131 44 0 chr15 14845272 14845478 -70850276 - L1PB2 LINE L1 0 6151 5937 1489 221 3 3 chr15 14845578 14845881 -70849873 + MLT1A1 LTR MaLR 36 338 -27 395 233 200 9 chr15 14845892 14846011 -70849743 + MER112 DNA MER1_type 1 96 -160 768 11 0 0 chr15 14846011 14846100 -70849654 + (CTATG)n Simple_repeat Simple_repeat 2 90 0 395 233 200 9 chr15 14846100 14846195 -70849559 + MER112 DNA MER1_type 96 256 0 339 374 88 3 chr15 14846383 14846677 -70849077 - L2 LINE L2 -1274 2040 1722 1383 120 15 5 chr15 14847380 14847580 -70848174 - AluSc SINE Alu -3 306 105 21 0 0 0 chr15 14847789 14847810 -70847944 + AT_rich Low_complexity Low_complexity 1 21 0 222 405 24 0 chr15 14849274 14849400 -70846354 + L3 LINE CR1 1446 1574 -3 286 258 21 43 chr15 14850391 14850484 -70845270 + L2 LINE L2 3175 3265 -48 2803 10 0 3 chr15 14850708 14851019 -70844735 - AluYa5 SINE Alu 0 311 2 828 270 115 32 chr15 14851477 14851980 -70843774 - L1ME3A LINE L1 -5 6165 5621 2076 116 10 10 chr15 14851991 14852284 -70843470 - AluSx SINE Alu -17 295 3 23 68 0 0 chr15 14852385 14852429 -70843325 + AT_rich Low_complexity Low_complexity 1 44 0 548 14 0 0 chr15 14852513 14852582 -70843172 + L1PA2 LINE L1 6083 6151 -4 5153 146 13 3 chr15 14853426 14854855 -70840899 - L1PA16 LINE L1 -9 6157 4718 776 155 0 0 chr15 14854960 14855089 -70840665 - L1M2 LINE L1 -541 5771 5643 280 263 177 5 chr15 14855138 14855347 -70840407 - LTR33 LTR ERVL -20 501 257 2499 41 0 0 chr15 14855995 14856286 -70839468 - AluY SINE Alu -20 291 1 373 325 186 5 chr15 14856344 14856538 -70839216 + MIR SINE MIR 34 262 0 234 0 0 0 chr15 14857099 14857125 -70838629 + (T)n Simple_repeat Simple_repeat 1 26 0 199 308 124 72 chr15 14858196 14858351 -70837403 + L2 LINE L2 1950 2096 -1218 1712 145 20 110 chr15 14858351 14858750 -70837004 - MLT1A1 LTR MaLR 0 365 3 199 308 124 72 chr15 14858750 14859133 -70836621 + L2 LINE L2 2096 2516 -798 23 68 0 0 chr15 14859815 14859859 -70835895 + AT_rich Low_complexity Low_complexity 1 44 0 201 339 73 26 chr15 14860391 14860583 -70835171 + L2 LINE L2 1993 2193 -1121 920 60 8 0 chr15 14860624 14860741 -70835013 - L1PA8 LINE L1 -15 6157 6040 232 128 0 0 chr15 14860741 14860780 -70834974 + L1P LINE L1 2716 2754 -3392 185 301 108 12 chr15 14860986 14861069 -70834685 + L2 LINE L2 2439 2529 -785 452 286 122 31 chr15 14861197 14861491 -70834263 + L2 LINE L2 2406 2726 -588 940 242 62 62 chr15 14861494 14862010 -70833744 - L1MCc LINE L1 -1792 5149 4634 6333 204 44 14 chr15 14862021 14865309 -70830445 - L1MCc LINE L1 -2946 3995 614 713 200 31 128 chr15 14865311 14865709 -70830045 - L1M4 LINE L1 -3195 2951 2601 1674 80 0 9 chr15 14865709 14865921 -70829833 - AluY SINE Alu -16 295 86 713 200 31 128 chr15 14865921 14865977 -70829777 - L1M4 LINE L1 -3545 2601 2541 855 251 74 67 chr15 14866069 14866516 -70829238 - L1MCc LINE L1 -5961 462 13 285 296 0 0 chr15 14866559 14866640 -70829114 - HAL1 LINE L1 -2195 312 232 22 0 0 0 chr15 14867006 14867028 -70828726 + AT_rich Low_complexity Low_complexity 1 22 0 1974 118 0 28 chr15 14867043 14867331 -70828423 - AluSx SINE Alu -30 282 3 864 208 17 17 chr15 14867799 14867972 -70827782 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chr15 14868298 14868327 -70827427 + AT_rich Low_complexity Low_complexity 1 29 0 2006 181 69 16 chr15 14868496 14868932 -70826822 + LOR1b LTR ERV1 3 461 0 2466 45 3 0 chr15 14870127 14870477 -70825277 - AluY SINE Alu 0 351 1 238 281 68 64 chr15 14871192 14871427 -70824327 + L1ME LINE L1 5542 5780 -341 312 205 26 13 chr15 14871427 14871505 -70824249 - MER116 DNA Mariner -1 79 1 238 281 68 64 chr15 14871505 14871550 -70824204 + L1ME LINE L1 5780 5823 -298 180 152 0 0 chr15 14871635 14871668 -70824086 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 113 7 16 chr15 14872482 14872815 -70822939 - AluSg SINE Alu 0 330 1 21 0 0 0 chr15 14872930 14872951 -70822803 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 14876322 14876348 -70819406 + AT_rich Low_complexity Low_complexity 1 26 0 189 74 0 0 chr15 14877298 14877325 -70818429 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 30 83 0 0 chr15 14877333 14877405 -70818349 + AT_rich Low_complexity Low_complexity 1 72 0 8740 123 101 1 chr15 14877696 14879106 -70816648 - Tigger1 DNA MER2_type -1 2417 868 2245 134 20 3 chr15 14879111 14879461 -70816293 - L1PA15 LINE L1 -20 6145 5790 * 12145 213 26 17 chr15 14879452 14879530 -70816224 - L1PA15 LINE L1 -593 5572 5496 2297 74 0 0 chr15 14879530 14879841 -70815913 - AluY SINE Alu 0 311 1 12145 213 26 17 chr15 14879841 14880016 -70815738 - L1PA15 LINE L1 -669 5496 5324 2289 111 0 9 chr15 14880016 14880331 -70815423 - AluSp SINE Alu -1 312 1 12145 213 26 17 chr15 14880331 14883372 -70812382 - L1PA15 LINE L1 -841 5324 2244 249 83 0 0 chr15 14883902 14883938 -70811816 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1858 126 47 4 chr15 14883959 14884236 -70811518 - AluSx SINE Alu -19 293 5 6006 92 9 26 chr15 14884292 14885840 -70809914 + L1PA10 LINE L1 4632 6150 -18 443 300 163 12 chr15 14885861 14886101 -70809653 - L2 LINE L2 -61 3252 2977 296 283 165 110 chr15 14887297 14887569 -70808185 - L2 LINE L2 0 3272 2986 518 230 79 0 chr15 14887829 14887955 -70807799 - MIR SINE MIR -56 206 71 379 226 0 48 chr15 14888032 14888116 -70807638 - L2 LINE L2 -4 3309 3230 326 266 64 0 chr15 14889275 14889369 -70806385 + MIR SINE MIR 65 164 -98 1828 129 94 15 chr15 14891259 14891600 -70804154 - THE1C LTR MaLR 0 375 8 402 239 106 21 chr15 14891608 14891750 -70804004 + MIR SINE MIR 32 185 -77 2264 84 0 47 chr15 14892620 14892940 -70802814 - AluSg SINE Alu -5 305 1 678 184 86 0 chr15 14893335 14893498 -70802256 - L1MA9 LINE L1 -38 6274 6098 306 111 0 0 chr15 14893615 14893660 -70802094 - MER2 DNA MER2_type -138 207 163 4330 234 36 35 chr15 14893776 14894801 -70800953 - L1PA13 LINE L1 -3817 2980 1958 1948 129 30 10 chr15 14894801 14895104 -70800650 - AluSc SINE Alu 0 309 1 4330 234 36 35 chr15 14895104 14896553 -70799201 - L1PA13 LINE L1 -4839 1958 5 4991 189 6 2 chr15 14896562 14897446 -70798308 - Tigger1 DNA MER2_type -1527 891 5 305 267 221 4 chr15 14897561 14897699 -70798055 + HAL1 LINE L1 1040 1147 -1360 847 105 23 8 chr15 14897699 14897832 -70797922 - L1MA4 LINE L1 -11 6289 6155 305 267 221 4 chr15 14897832 14897974 -70797780 + HAL1 LINE L1 1147 1381 -1126 3185 100 14 8 chr15 14898001 14898483 -70797271 + L1PA13 LINE L1 5678 6162 -1 883 275 158 7 chr15 14898849 14899253 -70796501 + HAL1 LINE L1 1406 1870 -637 525 223 59 25 chr15 14899256 14899458 -70796296 + HAL1 LINE L1 1956 2164 -343 537 284 145 56 chr15 14899895 14900198 -70795556 + MER102a DNA MER1_type 1 330 0 186 277 168 10 chr15 14900600 14900701 -70795053 + MIR3 SINE MIR 2 118 -90 7848 152 16 22 chr15 14900807 14902671 -70793083 + L1PB1 LINE L1 3663 5510 -641 1900 135 0 25 chr15 14902671 14902952 -70792802 - AluSx SINE Alu -36 276 3 7848 152 16 22 chr15 14902952 14903587 -70792167 + L1PB1 LINE L1 5510 6147 -4 258 241 48 36 chr15 14904190 14904273 -70791481 + MER94 DNA DNA 16 99 -35 321 164 49 0 chr15 14904289 14904350 -70791404 + MIR SINE MIR 197 260 -2 510 327 65 73 chr15 14906035 14906531 -70789223 - L2 LINE L2 -8 3305 2814 284 363 20 0 chr15 14906627 14906729 -70789025 - MIR SINE MIR -88 120 17 446 194 119 0 chr15 14907057 14907191 -70788563 + MER113 DNA MER1_type? 1 150 -371 227 374 136 20 chr15 14907430 14907628 -70788126 + L2 LINE L2 2553 2773 -541 198 0 0 0 chr15 14908741 14908763 -70786991 + (CA)n Simple_repeat Simple_repeat 1 22 0 1067 119 0 0 chr15 14908772 14908915 -70786839 - AluSg/x SINE Alu -19 291 149 262 318 159 8 chr15 14910504 14910630 -70785124 - MIR SINE MIR -70 192 48 335 284 69 15 chr15 14911604 14911808 -70783946 - L1ME LINE L1 -376 5745 5531 21 0 0 0 chr15 14911837 14911858 -70783896 + AT_rich Low_complexity Low_complexity 1 21 0 609 167 57 19 chr15 14912783 14912923 -70782831 - MLT1D LTR MaLR -313 154 20 2183 103 13 0 chr15 14913908 14914208 -70781546 + AluY SINE Alu 1 304 -7 259 347 0 0 chr15 14914213 14914288 -70781466 - MIR SINE MIR -157 105 31 26 0 0 0 chr15 14914783 14914809 -70780945 + AT_rich Low_complexity Low_complexity 1 26 0 347 214 24 12 chr15 14914995 14915079 -70780675 + AluJ/FLAM SINE Alu 18 102 -200 409 229 10 0 chr15 14915129 14915225 -70780529 - L1MD1 LINE L1 -410 5832 5736 990 167 52 0 chr15 14915356 14915530 -70780224 + AluJo SINE Alu 120 302 -10 490 217 9 0 chr15 14915930 14916036 -70779718 + L1ME1 LINE L1 5733 5839 -327 2511 152 7 7 chr15 14916371 14916819 -70778935 + L1MA5 LINE L1 5853 6300 0 261 213 49 0 chr15 14916980 14917041 -70778713 + L2 LINE L2 3242 3305 -8 746 181 0 0 chr15 14917483 14917610 -70778144 + FLAM_C SINE Alu 1 127 -16 962 198 210 18 chr15 14917718 14918051 -70777703 + L1MD2 LINE L1 1967 2363 -4033 1252 206 17 34 chr15 14918066 14918362 -70777392 + L1MD2 LINE L1 5621 5911 -517 872 261 92 0 chr15 14918351 14918612 -70777142 + L1ME LINE L1 5411 5695 -471 * 328 204 92 10 chr15 14918610 14918708 -70777046 + L1MA10 LINE L1 6225 6330 -4 * 524 253 76 34 chr15 14918750 14919078 -70776676 + L1MEc LINE L1 3039 3380 -2835 2706 206 89 59 chr15 14919087 14919631 -70776123 - MER63D DNA MER1_type -2 1059 533 180 0 0 0 chr15 14919631 14919651 -70776103 + (TC)n Simple_repeat Simple_repeat 2 21 0 2706 206 89 59 chr15 14919651 14919938 -70775816 - MER63D DNA MER1_type -528 533 189 2334 83 0 34 chr15 14919938 14920262 -70775492 + AluSq SINE Alu 1 313 0 2706 206 89 59 chr15 14920262 14920449 -70775305 - MER63D DNA MER1_type -872 189 9 266 290 51 14 chr15 14920503 14920641 -70775113 + L1MEc LINE L1 3439 3581 -2634 218 60 60 20 chr15 14920714 14920764 -70774990 + (TA)n Simple_repeat Simple_repeat 1 52 0 942 274 102 10 chr15 14920777 14921267 -70774487 + L1MEc LINE L1 3968 4502 -1713 330 269 15 90 chr15 14921351 14921525 -70774229 - MLT1H LTR MaLR -344 205 3 887 272 30 59 chr15 14921554 14921995 -70773759 - L1MCc LINE L1 -5978 445 18 213 39 0 0 chr15 14923496 14923522 -70772232 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr15 14924000 14924021 -70771733 + AT_rich Low_complexity Low_complexity 1 21 0 226 204 41 0 chr15 14925098 14925147 -70770607 - L2 LINE L2 0 3313 3263 264 336 9 19 chr15 14925393 14925500 -70770254 - L2 LINE L2 -1 3312 3207 2219 255 75 20 chr15 14925549 14926983 -70768771 - L1ME2 LINE L1 -10 6223 4684 2561 233 40 22 chr15 14927005 14927222 -70768532 - L1ME2 LINE L1 -1695 4520 4308 189 0 0 0 chr15 14927222 14927243 -70768511 + (TG)n Simple_repeat Simple_repeat 2 22 0 2561 233 40 22 chr15 14927243 14927441 -70768313 - L1ME2 LINE L1 -1907 4308 4115 1523 146 34 19 chr15 14927441 14927609 -70768145 - L1MC2 LINE L1 -1 6343 6166 1977 185 3 8 chr15 14927609 14927976 -70767778 - MLT1A1 LTR MaLR 0 365 1 1523 146 34 19 chr15 14927976 14928128 -70767626 - L1MC2 LINE L1 -178 6166 6018 2561 233 40 22 chr15 14928128 14928571 -70767183 - L1ME2 LINE L1 -2100 4115 3656 1471 122 0 0 chr15 14928723 14928928 -70766826 - AluSg/x SINE Alu -4 308 104 1811 64 13 0 chr15 14928930 14929166 -70766588 - THE1B-int LTR MaLR -1341 239 1 2155 118 51 25 chr15 14929166 14929521 -70766233 - THE1B LTR MaLR 0 364 1 314 270 65 51 chr15 14929547 14929762 -70765992 - HAL1 LINE L1 -861 1646 1429 385 272 91 64 chr15 14929766 14930284 -70765470 - L1ME2 LINE L1 -5083 1313 782 2669 171 24 40 chr15 14930318 14930868 -70764886 - L1PB4 LINE L1 -3 6153 5613 1890 163 79 11 chr15 14930868 14931572 -70764182 + L1PB4 LINE L1 4857 5612 -544 357 335 45 38 chr15 14931970 14932260 -70763494 - L1ME2 LINE L1 -6019 377 86 317 299 47 39 chr15 14932365 14932492 -70763262 - L1MC4a LINE L1 -1937 5871 5744 305 377 62 0 chr15 14932505 14932651 -70763103 - L1MC4a LINE L1 -2144 5664 5510 2407 119 19 24 chr15 14933826 14934054 -70761700 + THE1C LTR MaLR 1 228 -147 2383 115 19 22 chr15 14934054 14934419 -70761335 - THE1B LTR MaLR 0 364 1 2407 119 19 24 chr15 14934419 14934567 -70761187 + THE1C LTR MaLR 228 375 0 201 374 37 0 chr15 14935291 14935398 -70760356 + L2 LINE L2 3147 3257 -15 328 370 70 29 chr15 14935429 14935813 -70759941 - L2 LINE L2 -671 2643 2244 405 181 69 164 chr15 14936710 14936942 -70758812 + MER112 DNA MER1_type 3 212 -48 234 0 0 0 chr15 14936997 14937023 -70758731 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1808 145 0 10 chr15 14937033 14937343 -70758411 - AluYa5 SINE Alu 0 311 5 21 0 0 0 chr15 14937404 14937425 -70758329 + AT_rich Low_complexity Low_complexity 1 21 0 10285 238 35 19 chr15 14937715 14941672 -70754082 - L1PBb LINE L1 -1355 4848 781 349 276 0 8 chr15 14941686 14941809 -70753945 - L1PBb LINE L1 -3609 2594 2473 556 289 61 0 chr15 14942199 14942379 -70753375 - L1PBb LINE L1 -5324 880 690 * 3352 184 38 8 chr15 14942359 14942991 -70752763 - L1PA15-16 LINE L1 -5280 1569 919 475 258 18 18 chr15 14942986 14943149 -70752605 + L1MB7 LINE L1 5979 6141 -43 * 219 114 0 0 chr15 14943318 14943353 -70752401 + (TA)n Simple_repeat Simple_repeat 2 36 0 2331 92 0 13 chr15 14944063 14944369 -70751385 + AluY SINE Alu 1 302 -9 2105 123 7 3 chr15 14944784 14945092 -70750662 - AluSq SINE Alu -4 309 1 996 208 35 0 chr15 14945596 14945798 -70749956 + MER3 DNA MER1_type 1 209 0 1294 153 40 22 chr15 14951091 14951314 -70744440 + Charlie3 DNA MER1_type 6 232 -2478 * 1735 102 35 12 chr15 14951309 14951564 -70744190 + Charlie3 DNA MER1_type 2442 2702 -8 235 310 111 63 chr15 14952224 14952404 -70743350 + MLT1K LTR MaLR 305 504 -84 1427 219 123 10 chr15 14952404 14952819 -70742935 - LTR40b LTR ERVL 0 462 1 235 310 111 63 chr15 14952819 14952909 -70742845 + MLT1K LTR MaLR 504 588 0 211 347 14 0 chr15 14953632 14953704 -70742050 + L2 LINE L2 3200 3272 0 1939 214 112 0 chr15 14954363 14954835 -70740919 + L1MC4 LINE L1 6479 7003 -1039 540 204 36 8 chr15 14954859 14954995 -70740759 + L1MC4 LINE L1 7880 7995 0 231 241 98 30 chr15 14955009 14955142 -70740612 + L1MC5 LINE L1 7800 7941 -20 228 163 0 0 chr15 14955823 14955866 -70739888 + (TG)n Simple_repeat Simple_repeat 2 44 0 338 235 12 12 chr15 14956772 14956853 -70738901 - MIR SINE MIR -1 261 181 22 0 0 0 chr15 14958113 14958135 -70737619 + AT_rich Low_complexity Low_complexity 1 22 0 9379 29 3 0 chr15 14958135 14960028 -70735726 - L1PA3 LINE L1 0 6155 4265 618 198 40 16 chr15 14961172 14961298 -70734456 + FLAM_A SINE Alu 4 132 -1 331 227 100 53 chr15 14963190 14963340 -70732414 + MIR SINE MIR 100 256 -6 350 241 13 0 chr15 14963388 14963467 -70732287 + Tigger5 DNA MER2_type 1 80 -2243 281 186 51 17 chr15 14963468 14963527 -70732227 - Tigger5 DNA MER2_type -6 2317 2257 * 318 152 0 0 chr15 14963526 14963572 -70732182 + Tigger5 DNA MER2_type 2278 2323 0 2228 121 0 0 chr15 14965354 14965661 -70730093 + AluSp SINE Alu 1 307 -6 465 322 17 34 chr15 14965729 14965906 -70729848 + MER5B DNA MER1_type 2 175 -3 660 191 22 0 chr15 14967001 14967137 -70728617 - MER33 DNA MER1_type -185 139 1 348 335 124 15 chr15 14967271 14967674 -70728080 + L1M4 LINE L1 4309 4755 -1391 5856 148 12 4 chr15 14967698 14968648 -70727106 + L1PB1 LINE L1 4824 5767 -384 318 50 0 0 chr15 14968648 14968688 -70727066 + (TA)n Simple_repeat Simple_repeat 1 40 0 5856 148 12 4 chr15 14968688 14969076 -70726678 + L1PB1 LINE L1 5767 6151 0 1791 175 0 4 chr15 14969481 14969761 -70725993 + AluJb SINE Alu 5 283 -29 203 61 30 0 chr15 14969766 14969799 -70725955 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr15 14970327 14970348 -70725406 + AT_rich Low_complexity Low_complexity 1 21 0 926 19 0 0 chr15 14970416 14970523 -70725231 + L1PA3 LINE L1 6047 6153 -2 395 335 71 48 chr15 14970842 14971236 -70724518 + LTR16C LTR ERVL 87 489 -2 5362 244 82 26 chr15 14971236 14974297 -70721457 + L1M3e LINE L1 831 4027 -2355 209 254 55 0 chr15 14974299 14974354 -70721400 + MER5B DNA MER1_type 121 178 0 340 363 15 15 chr15 14975836 14975971 -70719783 + MIR SINE MIR 16 150 -58 600 297 59 7 chr15 14976101 14976321 -70719433 + MIR SINE MIR 15 236 -26 182 284 104 0 chr15 14977595 14977662 -70718092 + MIR SINE MIR 186 259 -3 360 253 102 11 chr15 14978008 14978194 -70717560 - L1ME2 LINE L1 -297 5867 5665 258 271 24 100 chr15 14978244 14978454 -70717300 + MER112 DNA MER1_type 67 260 0 1853 230 70 26 chr15 14978559 14979015 -70716739 - MER110 LTR ERV1 -15 476 1 372 257 126 46 chr15 14979023 14979284 -70716470 - L1ME2 LINE L1 -577 5585 5304 318 245 202 29 chr15 14979302 14979510 -70716244 - L1ME2 LINE L1 -820 5326 5083 6021 92 14 0 chr15 14979585 14980560 -70715194 + L1PB2 LINE L1 5163 6149 -2 454 249 35 29 chr15 14980878 14981051 -70714703 - MLT1H LTR MaLR -375 174 1 243 0 0 0 chr15 14981351 14981378 -70714376 + (T)n Simple_repeat Simple_repeat 1 27 0 2306 191 72 52 chr15 14982436 14983085 -70712669 + MER21B LTR ERV1 132 793 -70 400 286 65 77 chr15 14983123 14983459 -70712295 + MLT1J2 LTR MaLR 36 367 -83 1919 198 115 9 chr15 14984186 14984646 -70711108 + LTR22 LTR ERVK 1 509 0 361 317 18 45 chr15 14984673 14985187 -70710567 - L1MEd LINE L1 -870 1620 1021 184 291 0 0 chr15 14986998 14987053 -70708701 + L2 LINE L2 2592 2646 -668 25 65 0 0 chr15 14987071 14987117 -70708637 + AT_rich Low_complexity Low_complexity 1 46 0 980 209 5 14 chr15 14987456 14987667 -70708087 + MER3 DNA MER1_type 1 209 0 248 432 54 7 chr15 14987932 14988080 -70707674 + L2 LINE L2 3116 3270 -2 198 71 0 0 chr15 14988681 14988709 -70707045 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 222 91 0 0 chr15 14988771 14988804 -70706950 + (CATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr15 14989313 14989345 -70706409 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 14989802 14989825 -70705929 + AT_rich Low_complexity Low_complexity 1 23 0 1075 244 78 55 chr15 14991922 14992373 -70703381 + MLT1C LTR MaLR 7 467 0 388 327 129 56 chr15 14992390 14993470 -70702284 + L2 LINE L2 2006 3183 -89 2007 130 20 0 chr15 14994958 14995259 -70700495 + AluSc SINE Alu 1 307 -2 2254 99 0 0 chr15 14997171 14997454 -70698300 + AluSg SINE Alu 1 283 -27 545 64 13 0 chr15 14997454 14997532 -70698222 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 252 279 48 67 chr15 14998684 14998788 -70696966 + L3 LINE CR1 1349 1450 -127 1029 163 117 0 chr15 14999292 14999488 -70696266 - MER20 DNA MER1_type 0 219 1 698 209 46 67 chr15 14999803 15000041 -70695713 - MLT2C1 LTR ERVL -115 282 49 1813 179 31 17 chr15 15000041 15000399 -70695355 - MLT1A1 LTR MaLR 0 365 3 698 209 46 67 chr15 15000399 15000443 -70695311 - MLT2C1 LTR ERVL -348 49 6 307 150 8 5 chr15 15000514 15000576 -70695178 + MLT1A1 LTR MaLR 255 390 -61 3865 186 30 8 chr15 15000680 15001507 -70694247 + L1MB7 LINE L1 5330 6174 -10 2260 108 0 0 chr15 15002337 15002633 -70693121 - AluSg SINE Alu -14 296 1 522 0 0 0 chr15 15003385 15003443 -70692311 + (TA)n Simple_repeat Simple_repeat 2 59 0 2120 109 4 0 chr15 15003465 15003740 -70692014 - AluSq SINE Alu -37 276 1 247 161 16 16 chr15 15003885 15003947 -70691807 + CT-rich Low_complexity Low_complexity 1 62 0 187 354 127 0 chr15 15005368 15005447 -70690307 - L2 LINE L2 -2 3270 3182 192 152 0 0 chr15 15006031 15006064 -70689690 + (CATA)n Simple_repeat Simple_repeat 4 36 0 654 288 113 0 chr15 15009706 15009928 -70685826 + MIR SINE MIR 6 252 -10 232 227 0 30 chr15 15010453 15010519 -70685235 + L2 LINE L2 3165 3228 -85 23 54 0 0 chr15 15010541 15010578 -70685176 + AT_rich Low_complexity Low_complexity 1 37 0 427 312 85 0 chr15 15010653 15010842 -70684912 + MER63A DNA MER1_type 5 209 -1 530 211 0 55 chr15 15010979 15011107 -70684647 + MER68 LTR ERV1 1 121 -441 773 308 23 95 chr15 15012490 15012922 -70682832 - L2 LINE L2 -26 3246 2846 462 309 20 0 chr15 15014129 15014281 -70681473 - LTR67 LTR ERVL -9 548 394 255 345 23 40 chr15 15014445 15014619 -70681135 - LTR67 LTR ERVL -367 190 20 481 274 54 20 chr15 15015043 15015247 -70680507 - L1MC4 LINE L1 -480 7562 7352 4385 224 54 59 chr15 15015277 15017393 -70678361 + L1PA10 LINE L1 11 2163 -4298 * 4782 26 5 0 chr15 15017389 15017972 -70677782 - L1P LINE L1 -1852 4294 3709 3084 24 0 19 chr15 15017972 15018405 -70677349 + L1PA3 LINE L1 5789 6214 0 8292 144 32 8 chr15 15018421 15021110 -70674644 + L1PA10 LINE L1 2158 5013 -1470 2559 10 0 58 chr15 15021110 15021423 -70674331 - AluYa5 SINE Alu -16 295 1 8292 144 32 8 chr15 15021423 15022931 -70672823 + L1PA10 LINE L1 5013 6483 0 1428 240 57 63 chr15 15022940 15023752 -70672002 - L1MC4 LINE L1 -567 7321 6414 58 70 0 0 chr15 15023923 15024037 -70671717 + AT_rich Low_complexity Low_complexity 1 114 0 410 271 134 39 chr15 15024101 15024756 -70670998 - L1M4 LINE L1 -1726 4420 3742 22 35 0 0 chr15 15024835 15024864 -70670890 + AT_rich Low_complexity Low_complexity 1 29 0 455 336 16 20 chr15 15025464 15025714 -70670040 - L1MEc LINE L1 -4636 1971 1723 253 269 43 0 chr15 15025790 15025883 -70669871 - L1MEc LINE L1 -5031 1395 1299 4793 65 0 0 chr15 15026780 15027367 -70668387 + LTR14C LTR ERVK 1 587 0 413 299 58 36 chr15 15027594 15027818 -70667936 - MLT1J LTR MaLR -44 467 239 1271 278 19 6 chr15 15028033 15028501 -70667253 + L1M4 LINE L1 3869 4342 -1804 3840 107 5 3 chr15 15028546 15029114 -70666640 + HERVK22 LTR ERVK 186 754 -6083 11848 96 3 13 chr15 15029402 15030962 -70664792 + HERVK22 LTR ERVK 2327 3870 -2967 2161 111 7 0 chr15 15030962 15031268 -70664486 - AluSg SINE Alu -2 308 1 11848 96 3 13 chr15 15031268 15031557 -70664197 + HERVK22 LTR ERVK 3870 4160 -2677 524 70 0 0 chr15 15031557 15031628 -70664126 + U3 snRNA snRNA 1 71 -146 2786 130 23 2 chr15 15031628 15032420 -70663334 + HERVK22 LTR ERVK 3172 6837 0 2052 184 87 17 chr15 15032420 15032892 -70662862 + LTR22 LTR ERVK 1 505 -4 1171 308 88 28 chr15 15032920 15034027 -70661727 - L1MEc LINE L1 -5131 1265 92 197 265 249 28 chr15 15034968 15035149 -70660605 + L2 LINE L2 3035 3255 -58 232 246 0 18 chr15 15035990 15036047 -70659707 + GA-rich Low_complexity Low_complexity 1 56 0 411 272 154 0 chr15 15037559 15037721 -70658033 - MIR SINE MIR -12 250 64 312 140 0 0 chr15 15038354 15038404 -70657350 - MER94 DNA DNA -83 51 2 419 266 72 43 chr15 15038594 15038733 -70657021 + MER5B DNA MER1_type 11 142 -36 280 98 0 0 chr15 15041413 15041454 -70654300 - L1P LINE L1 -1224 4922 4882 1764 212 36 0 chr15 15041820 15041935 -70653819 + L1P LINE L1 4664 4773 -1373 203 61 30 0 chr15 15041935 15041968 -70653786 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1764 212 36 0 chr15 15041968 15042267 -70653487 + L1P LINE L1 4773 5093 -1053 339 25 0 0 chr15 15044737 15044777 -70650977 + (TG)n Simple_repeat Simple_repeat 1 40 0 331 283 69 48 chr15 15044916 15045061 -70650693 - MER5A DNA MER1_type -24 165 18 22 0 0 0 chr15 15046248 15046270 -70649484 + AT_rich Low_complexity Low_complexity 1 22 0 2154 201 33 10 chr15 15046738 15047225 -70648529 - MER34 LTR ERV1 0 542 45 249 241 0 0 chr15 15047243 15047301 -70648453 - MER34C LTR ERV1 -493 92 35 2015 153 0 0 chr15 15048422 15048717 -70647037 + AluSx SINE Alu 1 295 -17 8027 181 40 40 chr15 15048996 15050751 -70645003 - MER52A LTR ERV1 0 1755 1 542 266 108 18 chr15 15050932 15051154 -70644600 - MIR SINE MIR -17 245 4 260 258 112 11 chr15 15052111 15052200 -70643554 - MER5B DNA MER1_type -80 98 1 208 148 37 19 chr15 15052276 15052330 -70643424 + (TA)n Simple_repeat Simple_repeat 1 55 0 196 290 130 20 chr15 15053840 15053940 -70641814 + MIR3 SINE MIR 59 169 -39 519 297 32 0 chr15 15054461 15054616 -70641138 + MIR SINE MIR 77 236 -26 300 261 11 33 chr15 15056514 15056606 -70639148 + L1MC4 LINE L1 6614 6703 -1339 311 255 82 10 chr15 15056625 15056723 -70639031 + L1MC4 LINE L1 6615 6719 -1323 315 243 35 0 chr15 15056746 15056919 -70638835 + (TA)n Simple_repeat Simple_repeat 2 180 0 303 344 137 4 chr15 15056924 15057180 -70638574 + L2 LINE L2 2467 2756 -558 200 307 59 50 chr15 15057187 15057288 -70638466 - MER5B DNA MER1_type -76 102 1 445 204 71 66 chr15 15057787 15058013 -70637741 - L1MC5 LINE L1 -37 7924 7698 716 238 174 14 chr15 15058041 15058331 -70637423 - MLT1D LTR MaLR -2 503 167 1619 138 164 52 chr15 15058331 15058566 -70637188 + MSTA LTR MaLR 1 208 -220 2302 132 22 11 chr15 15058566 15058937 -70636817 + THE1C LTR MaLR 1 375 0 1619 138 164 52 chr15 15058937 15059086 -70636668 + MSTA LTR MaLR 208 428 0 626 203 98 49 chr15 15059086 15059249 -70636505 - MLT1D LTR MaLR -334 171 1 295 157 0 0 chr15 15059260 15059311 -70636443 - L1MC5 LINE L1 -302 7659 7609 368 256 77 70 chr15 15060118 15060228 -70635526 + MIR3 SINE MIR 37 150 -58 869 445 133 0 chr15 15060228 15060491 -70635263 + AluSx SINE Alu 1 298 -4 368 256 77 70 chr15 15060491 15060536 -70635218 + MIR3 SINE MIR 150 193 -15 5612 121 28 3 chr15 15060629 15061871 -70633883 - L1PA14 LINE L1 -2 6159 4888 257 237 31 62 chr15 15063738 15063835 -70631919 + L3 LINE CR1 1138 1231 -346 312 91 0 0 chr15 15063846 15063890 -70631864 + (TG)n Simple_repeat Simple_repeat 1 44 0 511 335 43 35 chr15 15063951 15064181 -70631573 + L3 LINE CR1 1244 1475 -102 200 321 113 54 chr15 15065229 15065450 -70630304 + L3 LINE CR1 1251 1484 -93 615 342 98 56 chr15 15066517 15066996 -70628758 + L3 LINE CR1 1071 1569 -8 1350 173 60 49 chr15 15067209 15067247 -70628507 - THE1C LTR MaLR -2 373 337 1992 142 0 10 chr15 15067247 15067543 -70628211 + AluSg SINE Alu 1 293 -17 1350 173 60 49 chr15 15067543 15067869 -70627885 - THE1C LTR MaLR -38 337 5 1784 152 55 36 chr15 15068050 15068413 -70627341 + THE1C LTR MaLR 6 375 0 1743 309 124 20 chr15 15068416 15069384 -70626370 - L2 LINE L2 -258 3055 1990 6115 213 12 13 chr15 15069467 15070767 -70624987 + L1PA15-16 LINE L1 1 1257 -5592 12914 193 21 13 chr15 15070767 15076853 -70618901 + L1PA16 LINE L1 733 6867 -2 216 294 92 18 chr15 15078011 15078120 -70617634 + MIR SINE MIR 20 136 -72 251 314 49 29 chr15 15078569 15078671 -70617083 - L2 LINE L2 -1 3312 3209 2458 61 6 16 chr15 15078810 15079122 -70616632 + AluY SINE Alu 1 309 -2 499 231 308 0 chr15 15079159 15079315 -70616439 - MIR SINE MIR 0 262 59 1756 49 0 0 chr15 15081356 15081559 -70614195 - L1PA4 LINE L1 -3 6152 5950 31 26 0 0 chr15 15082043 15082081 -70613673 + AT_rich Low_complexity Low_complexity 1 38 0 445 265 240 39 chr15 15082137 15082229 -70613525 - MIR SINE MIR -1 261 189 387 0 0 0 chr15 15082229 15082272 -70613482 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2306 71 4 0 chr15 15082273 15082553 -70613201 - AluSq SINE Alu -32 281 1 445 265 240 39 chr15 15082553 15082662 -70613092 - MIR SINE MIR -72 190 17 253 234 53 32 chr15 15083439 15083533 -70612221 + L1ME3A LINE L1 6070 6165 -5 365 232 56 24 chr15 15084482 15084607 -70611147 + L2 LINE L2 2375 2503 -811 386 318 9 9 chr15 15084763 15084873 -70610881 + MERVL LTR ERVL 4101 4210 -1275 1426 137 34 9 chr15 15084877 15085110 -70610644 - AluSg/x SINE Alu 0 312 74 879 325 82 49 chr15 15085114 15085955 -70609799 + MERVL LTR ERVL 4246 5114 -650 282 307 87 14 chr15 15086040 15086178 -70609576 + MERVL LTR ERVL 5177 5323 -331 511 265 56 55 chr15 15086280 15086655 -70609099 + LTR16A LTR ERVL 10 441 -9 948 287 153 26 chr15 15086663 15087237 -70608517 + L2 LINE L2 2673 3313 0 214 191 0 0 chr15 15087558 15087600 -70608154 + T-rich Low_complexity Low_complexity 1 42 0 186 265 29 29 chr15 15087818 15087886 -70607868 - MIR SINE MIR -87 121 54 536 296 28 32 chr15 15088321 15088537 -70607217 - MIR SINE MIR -1 261 47 216 149 0 0 chr15 15088616 15088663 -70607091 + (TC)n Simple_repeat Simple_repeat 1 47 0 359 312 88 0 chr15 15089228 15089373 -70606381 - MIR SINE MIR -70 192 37 2293 95 7 0 chr15 15091354 15091659 -70604095 - AluSp SINE Alu -6 307 1 641 221 0 15 chr15 15091725 15091861 -70603893 + MLT2F LTR ERVL 1 134 -529 543 176 57 47 chr15 15091869 15092053 -70603701 + MLT1E1 LTR MaLR 52 291 -363 281 145 26 145 chr15 15092167 15092243 -70603511 + MLT2C2 LTR ERVL 343 409 -55 219 244 33 11 chr15 15092244 15092334 -70603420 + (TA)n Simple_repeat Simple_repeat 2 93 0 647 317 35 0 chr15 15092844 15093071 -70602683 - MIR SINE MIR 0 262 28 1711 176 3 17 chr15 15094083 15094373 -70601381 - AluJo SINE Alu -26 286 1 904 218 16 46 chr15 15094601 15094862 -70600892 + L1MD2 LINE L1 6032 6285 -74 4209 98 5 5 chr15 15094965 15095544 -70600210 + MER11C LTR ERVK 479 1057 -14 4815 142 17 12 chr15 15095583 15096338 -70599416 + MSTA-int LTR MaLR 893 1651 0 2687 129 51 7 chr15 15096338 15096748 -70599006 + MSTA LTR MaLR 1 428 0 500 233 68 34 chr15 15096748 15096954 -70598800 - L1MEd LINE L1 -4934 1185 973 1893 160 0 7 chr15 15097246 15097534 -70598220 - AluJb SINE Alu -26 286 1 472 246 63 0 chr15 15101086 15101212 -70594542 + MER94 DNA DNA 1 134 0 196 204 20 41 chr15 15103414 15103428 -70592326 + L2 LINE L2 3207 3254 -18 198 114 29 0 chr15 15103428 15103463 -70592291 + MIR SINE MIR 215 250 -12 2054 119 3 14 chr15 15103538 15103832 -70591922 - AluSg SINE Alu -19 291 1 186 103 0 0 chr15 15104116 15104145 -70591609 + (CA)n Simple_repeat Simple_repeat 2 30 0 948 180 57 21 chr15 15104425 15104619 -70591135 - MER106A DNA MER1_type -2 234 34 3207 189 41 21 chr15 15104621 15105300 -70590454 - L1MC4 LINE L1 -144 7898 7206 337 235 160 7 chr15 15105292 15105418 -70590336 - L1MC4a LINE L1 -720 7147 7005 * 232 226 16 16 chr15 15105482 15105544 -70590210 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 357 43 0 0 chr15 15105553 15105600 -70590154 + (CA)n Simple_repeat Simple_repeat 2 48 0 411 283 102 48 chr15 15105990 15106302 -70589452 + L1MEd LINE L1 664 1019 -5100 711 242 75 0 chr15 15106302 15106463 -70589291 - MER96 DNA MER1_type -2 173 1 411 283 102 48 chr15 15106463 15106691 -70589063 + L1MEd LINE L1 1019 1233 -4886 417 272 68 16 chr15 15108444 15108601 -70587153 - MIR SINE MIR -67 141 21 282 330 55 45 chr15 15109875 15109905 -70585849 - MIR SINE MIR -65 143 115 2456 158 64 10 chr15 15109905 15110311 -70585443 - MSTA LTR MaLR 0 428 1 282 330 55 45 chr15 15110311 15110414 -70585340 - MIR SINE MIR -93 115 21 277 260 0 27 chr15 15110851 15110924 -70584830 + HAL1 LINE L1 2074 2144 -363 228 360 23 0 chr15 15111401 15111487 -70584267 + MIR3 SINE MIR 95 182 -26 2132 108 3 3 chr15 15112575 15112862 -70582892 - AluSx SINE Alu -13 299 13 464 304 34 125 chr15 15112937 15113385 -70582369 + L2 LINE L2 2866 3272 0 555 126 58 10 chr15 15113500 15113603 -70582151 - L1MB4 LINE L1 -2 6178 6071 1714 179 14 14 chr15 15113801 15114098 -70581656 + AluSx SINE Alu 1 297 -15 187 430 32 0 chr15 15115176 15115332 -70580422 - L2 LINE L2 -1 3271 3111 1697 194 56 28 chr15 15115725 15116080 -70579674 + MLT1A1 LTR MaLR 1 365 0 400 306 79 108 chr15 15117585 15118065 -70577689 - L1MC4a LINE L1 -1836 5972 5507 1145 210 107 31 chr15 15118204 15118454 -70577300 + MER2 DNA MER2_type 1 282 -62 1923 153 3 0 chr15 15118454 15118749 -70577005 - AluSq SINE Alu -17 296 1 1145 210 107 31 chr15 15118749 15118817 -70576937 + MER2 DNA MER2_type 282 343 -1 2106 128 3 0 chr15 15119278 15119576 -70576178 - AluSx SINE Alu -13 299 1 647 264 83 46 chr15 15120904 15121120 -70574634 - MER58A DNA MER1_type 0 224 1 185 259 19 37 chr15 15121158 15121212 -70574542 - L2 LINE L2 0 3272 3220 1523 282 113 16 chr15 15121926 15122738 -70573016 + L1M4 LINE L1 3652 4542 -1604 268 373 10 10 chr15 15123076 15123178 -70572576 - MER5A DNA MER1_type -3 186 85 221 250 58 0 chr15 15123775 15123827 -70571927 + L2 LINE L2 3235 3289 -24 31 0 0 0 chr15 15124920 15124951 -70570803 + AT_rich Low_complexity Low_complexity 1 31 0 397 301 42 14 chr15 15124951 15125094 -70570660 + MIR SINE MIR 97 243 -19 186 43 0 0 chr15 15125251 15125274 -70570480 + (TG)n Simple_repeat Simple_repeat 2 24 0 360 271 131 32 chr15 15125391 15125612 -70570142 + MIR SINE MIR 18 260 -2 357 325 112 41 chr15 15125804 15126099 -70569655 + L2 LINE L2 2641 2956 -358 188 333 0 14 chr15 15126322 15126391 -70569363 + L2 LINE L2 3139 3206 -66 283 238 16 16 chr15 15128450 15128513 -70567241 - MER81 DNA DNA -12 102 40 182 240 147 13 chr15 15129370 15129445 -70566309 - MIR SINE MIR -79 129 45 2058 124 3 10 chr15 15129695 15129994 -70565760 + AluSx SINE Alu 1 297 -15 2238 102 14 3 chr15 15131031 15131325 -70564429 + AluSq SINE Alu 1 297 -16 672 163 0 0 chr15 15131884 15132037 -70563717 + (CA)n Simple_repeat Simple_repeat 2 154 0 319 308 206 35 chr15 15133394 15133709 -70562045 + L2 LINE L2 2945 3313 0 187 219 73 0 chr15 15134788 15134829 -70560925 - L2 LINE L2 -20 3252 3209 453 355 30 4 chr15 15135016 15135250 -70560504 - MER102b DNA MER1_type 0 341 102 398 261 0 27 chr15 15135705 15135816 -70559938 + MLT1J1 LTR MaLR 3 110 -336 917 206 0 0 chr15 15135935 15136100 -70559654 + AluJb SINE Alu 130 294 -18 647 146 56 49 chr15 15136100 15136244 -70559510 + MSTB1 LTR MaLR 288 432 0 324 316 8 53 chr15 15136269 15136402 -70559352 + L2 LINE L2 3187 3313 0 319 328 70 8 chr15 15136479 15136607 -70559147 - MIR3 SINE MIR -71 137 2 24 0 0 0 chr15 15140040 15140064 -70555690 + AT_rich Low_complexity Low_complexity 1 24 0 2018 105 0 41 chr15 15140327 15140648 -70555106 + AluSq SINE Alu 1 309 0 604 304 35 22 chr15 15141761 15141991 -70553763 - MIR SINE MIR 0 262 30 24 53 0 0 chr15 15142287 15142325 -70553429 + AT_rich Low_complexity Low_complexity 1 38 0 60 37 0 0 chr15 15142418 15142499 -70553255 + AT_rich Low_complexity Low_complexity 1 81 0 46 19 0 0 chr15 15143029 15143082 -70552672 + AT_rich Low_complexity Low_complexity 1 53 0 2486 45 0 38 chr15 15143928 15144242 -70551512 + AluY SINE Alu 1 302 -9 187 356 106 47 chr15 15144855 15145091 -70550663 - L2 LINE L2 -341 2973 2724 1521 183 60 71 chr15 15145141 15145578 -70550176 - MSTB1 LTR MaLR 0 432 1 1766 191 20 0 chr15 15145692 15145996 -70549758 - AluJb SINE Alu -2 310 1 227 323 21 85 chr15 15146327 15146494 -70549260 + MIR3 SINE MIR 16 176 -43 216 213 43 0 chr15 15147765 15147812 -70547942 + G-rich Low_complexity Low_complexity 2 50 0 2003 159 0 0 chr15 15147928 15148224 -70547530 - AluSx SINE Alu -16 296 1 287 365 19 39 chr15 15149983 15150139 -70545615 - MER5A DNA MER1_type -36 153 1 433 240 30 0 chr15 15151059 15151159 -70544595 - MER58 DNA MER1_type -109 106 4 361 330 17 0 chr15 15152105 15152223 -70543531 - MER91A DNA MER1_type -42 154 35 22 0 0 0 chr15 15152716 15152738 -70543016 + AT_rich Low_complexity Low_complexity 1 22 0 4955 52 27 2 chr15 15152738 15153368 -70542386 - L1PA7 LINE L1 -6 6148 5503 330 24 0 0 chr15 15153368 15153409 -70542345 + U2 snRNA snRNA 18 58 -130 22 0 0 0 chr15 15153613 15153635 -70542119 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 10 chr15 15154430 15154732 -70541022 + AluSg SINE Alu 1 300 -10 706 293 62 18 chr15 15155117 15155342 -70540412 + MIR SINE MIR 22 256 -6 763 260 39 26 chr15 15156044 15156275 -70539479 - L2 LINE L2 -1175 2139 1906 215 353 39 29 chr15 15156362 15156464 -70539290 - MIR SINE MIR -122 140 38 9719 150 36 4 chr15 15157207 15159892 -70535862 + L1MA8 LINE L1 3519 6287 -4 214 297 20 40 chr15 15160960 15161061 -70534693 + MIR SINE MIR 67 165 -97 212 319 11 22 chr15 15161818 15161909 -70533845 + L2 LINE L2 2709 2798 -516 640 311 145 3 chr15 15161964 15162315 -70533439 + L2 LINE L2 2912 3312 -1 373 217 22 22 chr15 15165327 15165419 -70530335 - MER103 DNA DNA -43 123 32 524 341 59 0 chr15 15169359 15169529 -70526225 - MIR SINE MIR -6 256 77 1790 216 37 28 chr15 15169529 15169992 -70525762 + MLT1C LTR MaLR 1 467 0 2318 96 0 3 chr15 15170134 15170437 -70525317 - AluSq SINE Alu -11 302 1 9342 166 37 11 chr15 15171157 15172073 -70523681 + L1PA13 LINE L1 3526 4417 -1746 1830 133 0 0 chr15 15172073 15172328 -70523426 + AluSx SINE Alu 41 295 -17 9342 166 37 11 chr15 15172328 15174011 -70521743 + L1PA13 LINE L1 4417 6149 -14 369 282 48 0 chr15 15174323 15174426 -70521328 - MIR SINE MIR -76 186 79 24 53 0 0 chr15 15175081 15175119 -70520635 + AT_rich Low_complexity Low_complexity 1 38 0 273 75 0 0 chr15 15175268 15175308 -70520446 + (TG)n Simple_repeat Simple_repeat 1 40 0 305 313 206 28 chr15 15175308 15175707 -70520047 - L1ME4a LINE L1 -198 5923 5454 505 291 97 67 chr15 15175958 15176619 -70519135 - L1ME4a LINE L1 -941 5205 4525 2487 83 20 0 chr15 15176700 15177049 -70518705 - L1PB1 LINE L1 0 6151 5796 386 209 0 19 chr15 15177051 15177156 -70518598 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 759 73 0 9 chr15 15177160 15177270 -70518484 - L1PB1 LINE L1 -361 5790 5682 22 0 0 0 chr15 15181183 15181205 -70514549 + AT_rich Low_complexity Low_complexity 1 22 0 545 279 186 23 chr15 15182609 15182996 -70512758 + LTR16A LTR ERVL 1 450 0 4674 60 0 0 chr15 15183015 15183650 -70512104 - L1P LINE L1 -798 5348 4714 5832 48 1 0 chr15 15183650 15184357 -70511397 + L1PA5 LINE L1 5441 6154 0 2241 118 3 3 chr15 15184868 15185174 -70510580 - AluSx SINE Alu -4 308 3 326 226 43 70 chr15 15185822 15185937 -70509817 - L1ME2 LINE L1 -116 6048 5937 325 71 107 0 chr15 15185982 15186038 -70509716 - L1MA2 LINE L1 -4 6300 6239 1338 172 54 54 chr15 15186040 15186372 -70509382 - L1ME2 LINE L1 -216 5946 5615 827 166 108 25 chr15 15186373 15186617 -70509137 - L1ME2 LINE L1 -662 5500 5236 1998 55 0 27 chr15 15186633 15186890 -70508864 - AluY SINE Alu -18 293 44 601 270 77 69 chr15 15186893 15186965 -70508789 - L1MEc LINE L1 -4267 2558 2488 561 88 0 0 chr15 15186965 15187045 -70508709 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2181 156 5 16 chr15 15187045 15187423 -70508331 + THE1C LTR MaLR 2 375 0 2416 132 70 2 chr15 15187432 15187833 -70507921 - MSTA LTR MaLR 0 428 1 601 270 77 69 chr15 15187833 15188271 -70507483 - L1MEc LINE L1 -4344 2481 2033 307 331 55 21 chr15 15188462 15188607 -70507147 - L1MEc LINE L1 -5058 1588 1439 683 280 4 33 chr15 15188620 15188895 -70506859 - L1MEc LINE L1 -5368 1178 912 329 325 89 18 chr15 15188952 15189121 -70506633 - L1MEc LINE L1 -5646 896 716 1867 189 0 3 chr15 15190959 15191265 -70504489 - AluJb SINE Alu -7 305 1 491 222 0 67 chr15 15191363 15191498 -70504256 + MER5B DNA MER1_type 1 126 -52 443 264 222 0 chr15 15194373 15194517 -70501237 - MER5A DNA MER1_type -1 188 13 187 400 32 26 chr15 15194910 15195065 -70500689 - L2 LINE L2 -20 3252 3097 323 270 31 38 chr15 15196436 15196595 -70499159 + Charlie8 DNA MER1_type 26 183 -2234 551 242 132 6 chr15 15196875 15197057 -70498697 - MER5C DNA MER1_type -2 322 118 4808 60 0 0 chr15 15197275 15197877 -70497877 - L1PA5 LINE L1 0 6154 5553 600 244 0 0 chr15 15200317 15200440 -70495314 - MER5C DNA MER1_type -200 124 2 754 253 82 69 chr15 15200545 15200924 -70494830 - MLT1J LTR MaLR -11 500 117 223 292 79 0 chr15 15201152 15201241 -70494513 - L2 LINE L2 -49 3264 3169 244 224 0 82 chr15 15201781 15201879 -70493875 - L1MC4 LINE L1 -1339 6703 6614 10486 65 15 3 chr15 15201898 15204043 -70491711 - L1PA6 LINE L1 -15 6139 3973 555 248 75 0 chr15 15204556 15204717 -70491037 + MLT1B LTR MaLR 1 173 -217 358 127 28 0 chr15 15204735 15204806 -70490948 + CT-rich Low_complexity Low_complexity 2 74 0 748 234 68 10 chr15 15204807 15204999 -70490755 + MLT1B LTR MaLR 188 390 0 225 132 0 0 chr15 15205163 15205201 -70490553 + (CA)n Simple_repeat Simple_repeat 2 39 0 453 226 41 87 chr15 15205471 15205666 -70490088 - L2 LINE L2 0 3313 3128 14441 31 0 1 chr15 15205928 15208484 -70487270 - L1PA3 LINE L1 0 6155 3652 25 31 0 0 chr15 15208598 15208630 -70487124 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 15209218 15209246 -70486508 + AT_rich Low_complexity Low_complexity 1 28 0 918 154 37 0 chr15 15209393 15209555 -70486199 + L1PA10 LINE L1 5998 6165 -3 1133 177 47 115 chr15 15210175 15210576 -70485178 - MLT1A2 LTR MaLR 0 374 1 1212 178 43 26 chr15 15210971 15211274 -70484480 - L1MA7 LINE L1 0 6291 5984 1664 178 9 14 chr15 15211276 15211624 -70484130 + L1MA7 LINE L1 5636 5981 -310 275 280 229 11 chr15 15211894 15212069 -70483685 + L3 LINE CR1 456 668 -909 246 293 61 50 chr15 15212365 15212464 -70483290 + L2 LINE L2 3195 3294 -19 345 324 101 14 chr15 15214636 15214775 -70480979 - MIR SINE MIR -12 250 100 492 222 37 9 chr15 15214827 15214935 -70480819 + L2 LINE L2 3197 3307 -6 245 322 144 0 chr15 15215194 15215284 -70480470 - L2 LINE L2 -5 3267 3165 1584 191 58 43 chr15 15215467 15215953 -70479801 + Charlie1b DNA MER1_type 31 523 0 275 333 15 30 chr15 15215960 15216092 -70479662 - L2 LINE L2 -292 2980 2851 202 237 68 0 chr15 15216212 15216271 -70479483 + GA-rich Low_complexity Low_complexity 4 66 0 350 341 76 8 chr15 15216442 15216574 -70479180 + MIR SINE MIR 37 177 -85 398 264 103 50 chr15 15218209 15218470 -70477284 - L1ME4a LINE L1 -40 6081 5807 362 302 43 43 chr15 15218570 15218686 -70477068 - L2 LINE L2 0 3272 3157 593 216 137 13 chr15 15219444 15219806 -70475948 + MLT1E3 LTR MaLR 138 624 0 196 227 15 76 chr15 15220092 15220158 -70475596 - L2 LINE L2 -183 3089 3028 200 318 0 30 chr15 15221851 15221917 -70473837 + MIR SINE MIR 77 140 -68 1898 179 11 22 chr15 15222447 15222816 -70472938 + MLT1A1 LTR MaLR 1 365 0 808 31 0 0 chr15 15223708 15223806 -70471948 - L1PA4 LINE L1 -259 5896 5799 1908 65 4 0 chr15 15223806 15224052 -70471702 + L1PA4 LINE L1 5904 6152 -3 207 250 0 0 chr15 15224102 15224146 -70471608 + (CAA)n Simple_repeat Simple_repeat 2 45 0 543 292 17 11 chr15 15224160 15224338 -70471416 - MIR SINE MIR -19 243 65 1901 168 19 3 chr15 15224367 15224743 -70471011 + L1MB3 LINE L1 5800 6181 -2 22 0 0 0 chr15 15225679 15225701 -70470053 + AT_rich Low_complexity Low_complexity 1 22 0 231 206 33 11 chr15 15227647 15227739 -70468015 + (TTA)n Simple_repeat Simple_repeat 1 94 0 208 150 25 0 chr15 15228094 15228134 -70467620 + CT-rich Low_complexity Low_complexity 2 42 0 1159 117 6 9 chr15 15228619 15228926 -70466828 - THE1C LTR MaLR -1 374 1 230 271 186 8 chr15 15228986 15229115 -70466639 - MIR SINE MIR -1 261 110 206 295 84 21 chr15 15229177 15229272 -70466482 - MIR SINE MIR -136 126 26 1991 154 133 18 chr15 15229991 15230375 -70465379 - MSTA LTR MaLR 0 428 1 733 188 7 0 chr15 15231508 15231646 -70464108 - MER67A LTR ERV1 0 543 405 988 95 65 6 chr15 15231671 15231839 -70463915 - L1MA3 LINE L1 0 6305 6128 4156 55 4 0 chr15 15231839 15232364 -70463390 - L1PA7 LINE L1 -1 6153 5627 1110 199 31 68 chr15 15232369 15232695 -70463059 - MER67A LTR ERV1 -131 412 99 387 0 0 0 chr15 15232704 15232747 -70463007 + (TG)n Simple_repeat Simple_repeat 1 43 0 602 112 31 0 chr15 15232797 15232895 -70462859 - MER67A LTR ERV1 -442 101 1 1470 223 0 11 chr15 15234255 15234537 -70461217 + AluJo SINE Alu 4 282 -30 293 303 0 0 chr15 15235755 15235821 -70459933 - L2 LINE L2 -2 3270 3205 269 225 14 0 chr15 15236169 15236249 -70459505 - L1MC/D LINE L1 -298 5823 5751 355 321 195 36 chr15 15236261 15236538 -70459216 - L1MC/D LINE L1 -2034 5774 5454 794 249 41 0 chr15 15236561 15236758 -70458996 - MLT1A1 LTR MaLR 0 365 161 33 0 0 0 chr15 15236966 15236999 -70458755 + AT_rich Low_complexity Low_complexity 1 33 0 33 0 0 42 chr15 15237551 15237572 -70458182 + AT_rich Low_complexity Low_complexity 1 21 -25 2958 3 0 0 chr15 15237572 15237890 -70457864 - AluYb8 SINE Alu 0 318 1 33 0 0 42 chr15 15237890 15237916 -70457838 + AT_rich Low_complexity Low_complexity 21 46 0 424 228 0 22 chr15 15238219 15238311 -70457443 + MER21B LTR ERV1 1 90 -773 2576 197 89 21 chr15 15238333 15238938 -70456816 + MER21B LTR ERV1 19 664 -199 2277 107 13 24 chr15 15238972 15239345 -70456409 - THE1C LTR MaLR -6 369 1 466 172 99 93 chr15 15239345 15239495 -70456259 + MER21B LTR ERV1 665 815 -48 1348 185 0 9 chr15 15239672 15239894 -70455860 - AluJo SINE Alu -9 303 84 763 295 85 48 chr15 15240198 15240617 -70455137 - LTR33 LTR ERVL -2 519 80 2001 110 0 0 chr15 15240617 15240880 -70454874 - AluSg SINE Alu -16 294 32 763 295 85 48 chr15 15240880 15240918 -70454836 - LTR33 LTR ERVL -441 80 45 2939 249 73 37 chr15 15241066 15241390 -70454364 - L1MEc LINE L1 -2635 3580 3269 21999 29 3 0 chr15 15241390 15244831 -70450923 - L1PA3 LINE L1 -5 6150 2702 2939 249 73 37 chr15 15244831 15246261 -70449493 - L1MEc LINE L1 -2946 3269 1808 8251 157 5 7 chr15 15246323 15248955 -70446799 - L1MA2 LINE L1 -3 6301 3675 412 339 77 15 chr15 15249333 15249528 -70446226 + MIR SINE MIR 41 247 -15 253 310 69 44 chr15 15249581 15249757 -70445997 + MIR3 SINE MIR 8 187 -63 2325 87 3 0 chr15 15249846 15250133 -70445621 + AluSp SINE Alu 1 288 -25 180 97 0 0 chr15 15250215 15250246 -70445508 + (A)n Simple_repeat Simple_repeat 1 31 0 284 249 41 66 chr15 15250755 15250946 -70444808 - LTR41 LTR ERVL -5 784 578 387 255 80 22 chr15 15251496 15251662 -70444092 - MIR SINE MIR -62 146 7 2183 123 0 3 chr15 15252926 15253228 -70442526 - AluJb SINE Alu -9 303 3 182 333 13 13 chr15 15253498 15253576 -70442178 - L2 LINE L2 -13 3300 3223 210 43 22 43 chr15 15253803 15253849 -70441905 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 378 61 0 0 chr15 15255574 15255623 -70440131 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 385 314 33 16 chr15 15255977 15256098 -70439656 - L2 LINE L2 -14 3258 3136 318 281 0 21 chr15 15256150 15256246 -70439508 - L1MC4 LINE L1 -1335 6707 6614 207 0 0 0 chr15 15256246 15256269 -70439485 + (CA)n Simple_repeat Simple_repeat 2 24 0 385 253 0 12 chr15 15256293 15256463 -70439291 + (TA)n Simple_repeat Simple_repeat 2 169 0 892 131 12 48 chr15 15256601 15256769 -70438985 - MLT2B1 LTR ERVL -253 267 106 371 352 56 20 chr15 15257151 15257347 -70438407 - MIR SINE MIR -48 214 12 201 393 89 0 chr15 15257665 15257777 -70437977 + L2 LINE L2 3151 3272 0 297 235 25 0 chr15 15258103 15258184 -70437570 - MLT-int LTR MaLR -977 758 676 2064 212 37 6 chr15 15258201 15258691 -70437063 - MLT-int LTR MaLR -1230 505 1 1679 189 76 70 chr15 15258693 15259205 -70436549 - MLT2B1 LTR ERVL -5 515 1 183 189 0 0 chr15 15259677 15259714 -70436040 - L2 LINE L2 0 3313 3277 23 68 0 0 chr15 15261337 15261381 -70434373 + AT_rich Low_complexity Low_complexity 1 44 0 181 355 84 9 chr15 15261543 15261650 -70434104 - L3b LINE CR1 -133 1450 1336 627 209 27 120 chr15 15262399 15262658 -70433096 + MER112 DNA MER1_type 19 253 -7 270 301 136 0 chr15 15263284 15263387 -70432367 - L2 LINE L2 -2 3311 3195 683 137 51 0 chr15 15263443 15263639 -70432115 - L1PA16 LINE L1 0 6166 5926 759 264 77 0 chr15 15263986 15264259 -70431495 + Charlie4a DNA MER1_type 37 330 -178 580 211 12 12 chr15 15264429 15264590 -70431164 + Charlie4a DNA MER1_type 340 500 -8 2071 165 135 5 chr15 15265843 15266286 -70429468 + MLT1D LTR MaLR 3 503 -2 316 275 0 12 chr15 15266293 15266373 -70429381 + MIR SINE MIR 15 93 -169 2556 60 0 13 chr15 15268569 15268884 -70426870 - AluY SINE Alu 0 311 1 818 264 14 9 chr15 15270344 15270560 -70425194 - MER20 DNA MER1_type -1 218 2 778 239 40 21 chr15 15273159 15273390 -70422364 - MIR SINE MIR -1 261 19 24 0 0 0 chr15 15274230 15274254 -70421500 + AT_rich Low_complexity Low_complexity 1 24 0 238 161 0 89 chr15 15274291 15274347 -70421407 + MER5B DNA MER1_type 1 51 -127 188 229 21 0 chr15 15274488 15274536 -70421218 - L2 LINE L2 0 3313 3265 435 249 48 79 chr15 15275036 15275201 -70420553 + MIR3 SINE MIR 35 194 -14 2063 223 72 2 chr15 15275649 15276231 -70419523 + L1ME3A LINE L1 5548 6170 0 276 288 89 48 chr15 15276231 15276377 -70419377 - MIR SINE MIR -51 211 60 289 182 0 0 chr15 15276422 15276466 -70419288 + L2 LINE L2 3251 3294 -19 537 293 63 0 chr15 15278158 15278332 -70417422 + MIR SINE MIR 52 236 -26 26 30 0 0 chr15 15278447 15278480 -70417274 + AT_rich Low_complexity Low_complexity 1 33 0 754 206 0 0 chr15 15278555 15278686 -70417068 + FLAM_C SINE Alu 1 131 -2 490 278 101 35 chr15 15278892 15279230 -70416524 - LTR33 LTR ERVL -159 362 3 342 355 36 24 chr15 15281732 15281898 -70413856 + MIR SINE MIR 23 190 -72 309 290 53 0 chr15 15282465 15282596 -70413158 + L1MC4a LINE L1 5792 5929 -1879 234 325 111 8 chr15 15282929 15283055 -70412699 - MIR SINE MIR -56 206 68 246 268 89 94 chr15 15283943 15284178 -70411576 - L2 LINE L2 -55 3258 3025 186 71 0 0 chr15 15286664 15286692 -70409062 + (A)n Simple_repeat Simple_repeat 1 28 0 209 278 0 0 chr15 15287892 15287946 -70407808 + (CATA)n Simple_repeat Simple_repeat 2 55 0 349 52 0 35 chr15 15288180 15288238 -70407516 + (CA)n Simple_repeat Simple_repeat 1 56 0 217 303 110 18 chr15 15288621 15288730 -70407024 - MIR SINE MIR -17 245 127 1545 186 20 17 chr15 15289388 15289684 -70406070 + AluJo SINE Alu 1 297 -15 1120 142 44 18 chr15 15289706 15290072 -70405682 + MSTA LTR MaLR 1 422 -6 225 305 42 34 chr15 15290362 15290480 -70405274 + MLT1J2 LTR MaLR 281 399 -51 1276 162 101 10 chr15 15291042 15291338 -70404416 - MER33 DNA MER1_type -1 323 1 239 246 0 15 chr15 15291672 15291737 -70404017 + (TG)n Simple_repeat Simple_repeat 1 64 0 246 310 149 40 chr15 15291797 15291971 -70403783 + MIR SINE MIR 38 230 -32 211 374 38 15 chr15 15291981 15292112 -70403642 - L2 LINE L2 -498 2816 2683 213 39 0 0 chr15 15293416 15293442 -70402312 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr15 15293971 15293994 -70401760 + AT_rich Low_complexity Low_complexity 1 23 0 3809 155 41 0 chr15 15296017 15296725 -70399029 + L1MA9 LINE L1 5571 6307 -5 423 339 17 17 chr15 15298577 15298754 -70397000 - MIR SINE MIR -73 189 13 1910 192 120 5 chr15 15298771 15299214 -70396540 - MLT1D LTR MaLR 0 505 12 783 286 64 31 chr15 15299754 15300145 -70395609 + MLT1I LTR MaLR 3 406 -3 1751 189 3 10 chr15 15300604 15300905 -70394849 - AluJb SINE Alu -13 299 1 2231 103 0 10 chr15 15302274 15302575 -70393179 + AluSc SINE Alu 1 298 -11 2476 51 0 29 chr15 15306054 15306368 -70389386 + AluY SINE Alu 1 305 -6 324 252 150 20 chr15 15307419 15307906 -70387848 + L1ME4a LINE L1 5494 6096 -25 269 153 0 17 chr15 15308063 15308122 -70387632 + (TA)n Simple_repeat Simple_repeat 1 58 0 2648 135 23 61 chr15 15308230 15308757 -70386997 - L1MC1 LINE L1 0 6333 5827 1914 224 42 22 chr15 15308757 15309681 -70386073 - L1M4 LINE L1 -3435 2535 1590 3255 229 27 33 chr15 15309710 15310760 -70384994 - L1M4 LINE L1 -4535 1437 395 1229 226 52 15 chr15 15310762 15311090 -70384664 - MLT1A1 LTR MaLR -12 353 14 304 297 9 18 chr15 15311131 15311242 -70384512 - L1M3c LINE L1 -5117 1024 915 409 345 41 41 chr15 15311335 15311700 -70384054 - L1M4 LINE L1 -5526 365 1 2347 192 19 0 chr15 15311706 15312180 -70383574 - L1MC/D LINE L1 -513 5820 5338 230 213 0 21 chr15 15315810 15315857 -70379897 - L2 LINE L2 -73 3240 3195 198 286 204 10 chr15 15316195 15316293 -70379461 + MIR SINE MIR 19 135 -73 472 260 0 57 chr15 15316338 15316461 -70379293 - L2 LINE L2 -1 3312 3197 470 207 0 99 chr15 15317546 15317667 -70378087 + L2 LINE L2 3201 3309 -4 512 228 325 5 chr15 15317688 15317885 -70377869 - MIR SINE MIR -1 261 2 47 33 0 0 chr15 15317936 15317997 -70377757 + AT_rich Low_complexity Low_complexity 1 61 0 926 266 13 26 chr15 15318115 15318348 -70377406 + MIR SINE MIR 33 262 0 191 35 0 35 chr15 15319031 15319060 -70376694 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 235 150 0 0 chr15 15320465 15320505 -70375249 - LTR67 LTR ERVL 0 557 518 371 323 172 16 chr15 15320514 15320706 -70375048 + MIR SINE MIR 21 242 -20 363 154 0 0 chr15 15320713 15320778 -70374976 + (CAT)n Simple_repeat Simple_repeat 1 65 0 806 341 108 10 chr15 15321312 15321954 -70373800 + L2 LINE L2 2355 3054 -218 4060 210 131 10 chr15 15322878 15324174 -70371580 - Charlie1 DNA MER1_type -6 2755 1 22 0 0 0 chr15 15324328 15324350 -70371404 + AT_rich Low_complexity Low_complexity 1 22 0 210 207 256 12 chr15 15326172 15326254 -70369500 - MIR3 SINE MIR -4 204 103 1358 132 47 0 chr15 15426630 15426843 -70268911 + AluSg/x SINE Alu 90 312 0 238 167 62 0 chr15 15426885 15426933 -70268821 - L1MC4a LINE L1 -343 7465 7415 297 314 33 33 chr15 15427018 15427171 -70268583 - L1MC4a LINE L1 -412 7396 7244 649 224 65 20 chr15 15427174 15427419 -70268335 - L1MC5 LINE L1 -713 7248 6993 303 230 7 93 chr15 15427459 15427555 -70268199 - L1MC4 LINE L1 -945 7097 7015 1795 165 10 7 chr15 15427555 15427858 -70267896 - AluJb SINE Alu -8 304 1 303 230 7 93 chr15 15427858 15427900 -70267854 - L1MC4 LINE L1 -1027 7015 6971 2232 107 0 10 chr15 15428124 15428422 -70267332 - AluSg SINE Alu -15 295 1 2402 85 3 3 chr15 15428735 15429040 -70266714 - AluSq SINE Alu -8 305 1 245 178 0 22 chr15 15429390 15429435 -70266319 + MLT1D LTR MaLR 1 44 -461 713 268 103 65 chr15 15429556 15429889 -70265865 - L2 LINE L2 -197 3116 2779 2202 120 3 0 chr15 15429893 15430184 -70265570 - AluSg SINE Alu -18 292 1 1609 123 4 0 chr15 15430309 15430537 -70265217 - AluSq SINE Alu 0 313 85 1210 129 0 0 chr15 15430651 15430822 -70264932 + AluSc SINE Alu 126 296 -13 246 301 62 0 chr15 15431519 15431632 -70264122 + L1M4 LINE L1 4913 5032 -1114 2173 130 10 0 chr15 15431849 15432150 -70263604 + AluSx SINE Alu 1 304 -8 207 301 12 0 chr15 15432419 15432502 -70263252 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2400 90 3 0 chr15 15432669 15432970 -70262784 - AluSp SINE Alu -11 302 1 718 220 112 58 chr15 15434047 15434366 -70261388 + LTR54 LTR ERV1 78 482 -28 1060 161 0 0 chr15 15434367 15434528 -70261226 + AluSq SINE Alu 1 161 -152 595 163 0 0 chr15 15434629 15434715 -70261039 - AluS SINE Alu -225 88 3 21 0 0 0 chr15 15435220 15435241 -70260513 + AT_rich Low_complexity Low_complexity 1 21 0 794 269 0 0 chr15 15435241 15435397 -70260357 - AluSg/x SINE Alu -23 289 134 2183 121 16 0 chr15 15435416 15435721 -70260033 - AluSx SINE Alu -2 310 1 826 253 29 17 chr15 15435737 15435978 -70259776 - L1ME3A LINE L1 -2 6168 5925 623 196 101 22 chr15 15435979 15436117 -70259637 - MER63 DNA MER1_type -61 775 1 306 167 0 33 chr15 15436119 15436179 -70259575 - L2 LINE L2 -68 3245 3188 616 250 93 0 chr15 15436417 15436557 -70259197 + MER21B LTR ERV1 338 490 -373 249 204 0 0 chr15 15436592 15436636 -70259118 + LTR54B LTR ERV1 409 452 -46 4151 219 47 11 chr15 15436645 15436874 -70258880 + L1M2 LINE L1 1226 1445 -5404 2332 151 68 29 chr15 15436874 15437099 -70258655 - MSTA LTR MaLR -2 426 176 333 0 0 0 chr15 15437099 15437136 -70258618 + (TG)n Simple_repeat Simple_repeat 1 37 0 2332 151 68 29 chr15 15437136 15437320 -70258434 - MSTA LTR MaLR -252 176 1 4151 219 47 11 chr15 15437320 15438097 -70257657 + L1M2 LINE L1 1445 2268 -4581 241 108 27 0 chr15 15438098 15438135 -70257619 + Alu SINE Alu 1 38 -95 1486 143 57 23 chr15 15438232 15438532 -70257222 - L1MA4 LINE L1 0 6300 5991 6005 38 19 0 chr15 15438632 15439312 -70256442 + L1PA5 LINE L1 5445 6137 -17 913 247 18 0 chr15 15439313 15439536 -70256218 + L1M2 LINE L1 3390 3616 -3232 207 0 0 0 chr15 15439543 15439566 -70256188 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1066 199 70 0 chr15 15439604 15439860 -70255894 + L1M2 LINE L1 4175 4448 -2400 441 240 10 0 chr15 15439855 15439959 -70255795 + L1M2 LINE L1 4937 5041 -1807 * 266 279 0 0 chr15 15439959 15440020 -70255734 + MER2 DNA MER2_type 1 61 -284 * 4327 173 7 18 chr15 15439966 15440696 -70255058 - MER44D DNA MER2_type -7 598 5 450 252 84 0 chr15 15440798 15440953 -70254801 + L1MC4 LINE L1 7190 7357 -685 731 180 55 0 chr15 15440953 15441081 -70254673 - FLAM_C SINE Alu -7 136 2 37 23 0 0 chr15 15441661 15441705 -70254049 + AT_rich Low_complexity Low_complexity 1 44 0 626 281 101 34 chr15 15441719 15442047 -70253707 - L1MC4a LINE L1 -1737 6071 5722 2272 104 0 3 chr15 15442083 15442381 -70253373 + AluSx SINE Alu 1 297 -15 643 110 0 0 chr15 15442388 15442470 -70253284 + AluS SINE Alu 2 83 -229 3676 158 35 21 chr15 15442570 15443316 -70252438 + L1M2 LINE L1 1928 2683 -4166 514 77 0 0 chr15 15443416 15443481 -70252273 - AluS SINE Alu -247 65 1 27 29 0 0 chr15 15443844 15443878 -70251876 + AT_rich Low_complexity Low_complexity 1 34 0 757 282 119 12 chr15 15446010 15446262 -70249492 - LTR33 LTR ERVL -234 287 9 304 287 51 41 chr15 15446292 15446487 -70249267 - L1MEd LINE L1 -5394 725 529 29 47 0 0 chr15 15446711 15446754 -70249000 + AT_rich Low_complexity Low_complexity 1 43 0 2253 106 0 3 chr15 15446759 15447061 -70248693 + AluSg SINE Alu 1 301 -9 2793 155 37 18 chr15 15447063 15447553 -70248201 - L1MB3 LINE L1 -10 6173 5675 350 352 45 39 chr15 15447683 15447862 -70247892 + MER91A DNA MER1_type 1 180 -16 349 291 8 34 chr15 15447873 15447990 -70247764 - L1MEd LINE L1 -5926 193 80 1717 150 44 98 chr15 15448060 15448446 -70247308 - MLT1A1 LTR MaLR 0 365 1 2084 83 4 0 chr15 15448495 15448747 -70247007 - AluSp SINE Alu -60 253 1 239 194 0 0 chr15 15448784 15448820 -70246934 + Alu SINE Alu 124 159 -143 2173 101 0 3 chr15 15448974 15449261 -70246493 - AluSq SINE Alu -26 287 2 1029 107 13 0 chr15 15449362 15449594 -70246160 + L1MA8 LINE L1 5620 5950 -341 2274 109 3 0 chr15 15450075 15450377 -70245377 + AluSq SINE Alu 9 311 -2 905 137 8 0 chr15 15450377 15450508 -70245246 + FLAM_C SINE Alu 1 132 -11 4062 185 83 15 chr15 15450516 15450993 -70244761 - MER21B LTR ERV1 -3 860 306 2273 95 3 0 chr15 15450993 15451287 -70244467 - AluSg SINE Alu -15 295 1 4062 185 83 15 chr15 15451287 15451600 -70244154 - MER21B LTR ERV1 -557 306 16 2037 124 13 0 chr15 15451600 15451907 -70243847 + MER2 DNA MER2_type 1 311 -34 1002 96 0 0 chr15 15452551 15452676 -70243078 + FLAM_C SINE Alu 1 125 -8 2292 78 3 0 chr15 15452700 15453012 -70242742 + AluSx SINE Alu 1 313 0 1831 185 35 78 chr15 15453521 15453694 -70242060 - MLT1C LTR MaLR -1 466 287 2177 115 7 0 chr15 15453694 15453999 -70241755 - AluSx SINE Alu -4 308 2 1831 185 35 78 chr15 15453999 15454217 -70241537 - MLT1C LTR MaLR -180 287 98 1691 94 75 130 chr15 15454217 15454548 -70241206 - AluSp SINE Alu 0 313 1 1831 185 35 78 chr15 15454548 15454642 -70241112 - MLT1C LTR MaLR -369 98 1 2058 25 0 8 chr15 15455396 15455631 -70240123 - AluY SINE Alu -11 300 68 1590 145 0 4 chr15 15455731 15455973 -70239781 - AluSx SINE Alu -71 241 1 1963 108 73 0 chr15 15457221 15457509 -70238245 - AluSx SINE Alu -3 309 1 317 323 58 26 chr15 15457512 15457606 -70238148 - MIR SINE MIR -17 245 143 5263 76 19 29 chr15 15457606 15458051 -70237703 + LTR8 LTR ERV1 1 438 -253 2085 116 3 7 chr15 15458051 15458352 -70237402 + AluSg SINE Alu 1 300 -10 5263 76 19 29 chr15 15458352 15458602 -70237152 + LTR8 LTR ERV1 438 689 -2 317 323 58 26 chr15 15458602 15458662 -70237092 - MIR SINE MIR -119 143 86 425 222 192 78 chr15 15458723 15458759 -70236995 - MER5A DNA MER1_type 0 189 158 2420 65 0 0 chr15 15458759 15459053 -70236701 + AluY SINE Alu 1 294 -17 2054 142 0 3 chr15 15459061 15459357 -70236397 + AluJb SINE Alu 1 295 -17 425 222 192 78 chr15 15459357 15459478 -70236276 - MER5A DNA MER1_type -37 152 4 613 222 48 8 chr15 15459610 15459831 -70235923 + MLT1D LTR MaLR 137 391 -96 237 367 75 8 chr15 15459869 15459989 -70235765 + L2 LINE L2 3128 3255 -17 1771 153 10 34 chr15 15460113 15460408 -70235346 - AluSx SINE Alu -24 288 1 1762 141 32 4 chr15 15460910 15461207 -70234547 - AluSx SINE Alu 0 305 1 21 36 0 0 chr15 15461230 15461258 -70234496 + AT_rich Low_complexity Low_complexity 1 28 0 2772 74 20 3 chr15 15461295 15461647 -70234107 - L1PA13 LINE L1 -2 6161 5804 3673 102 44 58 chr15 15461803 15461946 -70233808 - L1MA5A LINE L1 -3 6294 6150 2448 70 0 3 chr15 15461946 15462248 -70233506 - AluY SINE Alu -10 301 1 3673 102 44 58 chr15 15462248 15462743 -70233011 - L1MA5A LINE L1 -147 6150 5665 1836 214 23 15 chr15 15462744 15463241 -70232513 - L1 LINE L1 -3588 2794 2294 22 0 0 0 chr15 15464749 15464771 -70230983 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 15465174 15465195 -70230559 + AT_rich Low_complexity Low_complexity 1 21 0 387 188 70 102 chr15 15465215 15465343 -70230411 + L1MC4 LINE L1 7902 8025 -17 2233 105 7 0 chr15 15465360 15465656 -70230098 + AluSx SINE Alu 1 298 -14 1316 192 126 53 chr15 15465780 15466039 -70229715 + MER58B DNA MER1_type 1 240 -2180 180 0 0 0 chr15 15466039 15466059 -70229695 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2286 84 7 0 chr15 15466066 15466350 -70229404 - AluSg SINE Alu -24 286 1 1316 192 126 53 chr15 15466350 15466400 -70229354 + MER58B DNA MER1_type 245 341 0 1084 53 8 0 chr15 15467271 15467402 -70228352 + AluSp SINE Alu 1 132 -181 2149 191 35 5 chr15 15467510 15467913 -70227841 + MLT1A1-int LTR MaLR 1321 1735 0 1883 175 8 38 chr15 15467913 15468278 -70227476 + MLT1A1 LTR MaLR 1 354 -11 3559 190 50 30 chr15 15468283 15468611 -70227143 + L1MC1 LINE L1 4415 4735 -1598 2426 77 7 0 chr15 15468611 15468909 -70226845 + AluSx SINE Alu 1 300 -12 3559 190 50 30 chr15 15468909 15469313 -70226441 + L1MC1 LINE L1 4735 5129 -1204 2119 125 0 3 chr15 15469313 15469598 -70226156 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 15469598 15469629 -70226125 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2119 125 0 3 chr15 15469629 15469640 -70226114 + AluSx SINE Alu 286 296 -16 3559 190 50 30 chr15 15469640 15470332 -70225422 + L1MC1 LINE L1 5129 5870 -463 9868 97 11 9 chr15 15470332 15471616 -70224138 + HSMAR1 DNA Mariner 1 1287 0 3559 190 50 30 chr15 15471616 15471643 -70224111 + L1MC1 LINE L1 5870 5895 -438 556 73 0 0 chr15 15471744 15471812 -70223942 - AluS SINE Alu -244 69 2 1068 200 31 0 chr15 15471850 15472045 -70223709 - MER3 DNA MER1_type -1 208 8 1455 194 0 32 chr15 15473058 15473342 -70222412 + AluJo SINE Alu 11 285 -27 288 0 0 0 chr15 15473343 15473375 -70222379 + (TA)n Simple_repeat Simple_repeat 1 32 0 2154 91 40 13 chr15 15473445 15473743 -70222011 + AluSq SINE Alu 1 306 -7 648 146 64 0 chr15 15473824 15473934 -70221820 - MER94 DNA DNA -17 117 1 2292 115 0 3 chr15 15475349 15475653 -70220101 + AluSx SINE Alu 1 303 -9 1100 131 0 0 chr15 15475792 15475945 -70219809 + AluSx SINE Alu 5 157 -155 732 148 0 9 chr15 15476558 15476702 -70219052 + FLAM_A SINE Alu 8 150 0 2307 112 0 0 chr15 15476747 15477059 -70218695 + AluSx SINE Alu 1 312 0 2289 119 0 3 chr15 15477144 15477446 -70218308 + AluSx SINE Alu 1 301 -11 872 144 0 23 chr15 15477458 15477590 -70218164 + FLAM_C SINE Alu 3 131 -2 287 175 0 79 chr15 15477609 15477672 -70218082 - L2 LINE L2 -45 3268 3211 902 279 29 16 chr15 15477900 15477980 -70217774 - MER115 DNA AcHobo -2 691 613 2534 56 0 0 chr15 15477980 15478283 -70217471 + AluY SINE Alu 1 303 -8 902 279 29 16 chr15 15478283 15478446 -70217308 - MER115 DNA AcHobo -80 613 445 3395 225 73 9 chr15 15478474 15479273 -70216481 + MER21B LTR ERV1 3 852 -11 1290 301 37 32 chr15 15479305 15479740 -70216014 - MER115 DNA AcHobo -256 437 1 2260 107 0 3 chr15 15479769 15480069 -70215685 - AluSg SINE Alu -10 300 2 1240 146 0 0 chr15 15480578 15480756 -70214998 - AluSg/x SINE Alu -1 311 134 2304 101 0 10 chr15 15480756 15481053 -70214701 - AluSq SINE Alu -19 294 1 2380 102 0 6 chr15 15481056 15481369 -70214385 - AluSx SINE Alu -1 311 1 355 327 39 18 chr15 15481405 15481533 -70214221 - MIR SINE MIR -81 127 2 1989 129 3 10 chr15 15481554 15481867 -70213887 - AluSx SINE Alu 0 312 1 15369 201 29 17 chr15 15482206 15483670 -70212084 - L1MA4A LINE L1 -379 6566 5122 225 0 0 0 chr15 15483670 15483695 -70212059 + (TATTG)n Simple_repeat Simple_repeat 2 26 0 15369 201 29 17 chr15 15483695 15486487 -70209267 - L1MA4A LINE L1 -1823 5122 2203 2116 104 4 0 chr15 15486487 15486755 -70208999 - AluSp SINE Alu -16 297 29 2197 122 16 0 chr15 15487614 15487918 -70207836 + AluSx SINE Alu 1 309 -3 1432 223 141 76 chr15 15487977 15488752 -70207002 + LTR1B LTR ERV1 2 826 0 1958 128 80 14 chr15 15488795 15489147 -70206607 + THE1C LTR MaLR 1 375 0 538 163 0 0 chr15 15489408 15489500 -70206254 + L1MDa LINE L1 22 113 -6427 1838 224 116 0 chr15 15489512 15490012 -70205742 + L1MDa LINE L1 210 767 -5773 1665 232 45 26 chr15 15490340 15490809 -70204945 + MLT1E LTR MaLR 116 593 0 2897 98 9 5 chr15 15490818 15491238 -70204516 + L1PA10 LINE L1 5747 6168 0 191 241 69 0 chr15 15491244 15491302 -70204452 + MIR SINE MIR 179 240 -22 1978 125 3 10 chr15 15492404 15492700 -70203054 - AluSx SINE Alu 0 312 19 2509 64 3 0 chr15 15492858 15493156 -70202598 - AluSp SINE Alu -14 299 1 1754 126 8 12 chr15 15494412 15494667 -70201087 - AluJb SINE Alu -11 301 48 2163 110 0 0 chr15 15494770 15495062 -70200692 - AluSx SINE Alu -10 302 11 527 221 0 0 chr15 15495075 15495179 -70200575 - MLT-int LTR MaLR -1312 423 320 4113 177 15 47 chr15 15495180 15495649 -70200105 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 15495649 15495939 -70199815 + AluSx SINE Alu 1 299 -13 4113 177 15 47 chr15 15495939 15496484 -70199270 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 15496484 15496722 -70199032 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 15496729 15496825 -70198929 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 15496825 15497091 -70198663 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 15497091 15497698 -70198056 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 15497698 15498001 -70197753 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 15498001 15499105 -70196649 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 15499108 15499440 -70196314 - MLT-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 15499455 15499841 -70195913 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 15499845 15500094 -70195660 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 15500121 15501346 -70194408 - L1M4 LINE L1 -1743 4403 3144 1408 203 125 8 chr15 15501502 15501887 -70193867 + MER63B DNA MER1_type 1 430 -6 439 290 57 62 chr15 15501888 15502064 -70193690 - L1MEd LINE L1 -4886 1233 1059 1203 111 55 50 chr15 15502064 15502263 -70193491 - AluJb SINE Alu -8 304 105 555 56 0 0 chr15 15503765 15503836 -70191918 + (TA)n Simple_repeat Simple_repeat 1 71 0 2550 80 0 0 chr15 15503854 15504165 -70191589 - AluY SINE Alu 0 311 1 319 295 125 30 chr15 15504901 15505101 -70190653 - MIR SINE MIR -42 220 2 2193 92 11 0 chr15 15506290 15506571 -70189183 + AluSc SINE Alu 24 307 -2 813 269 113 45 chr15 15506589 15506916 -70188838 + L2 LINE L2 916 1276 -2038 2212 100 0 19 chr15 15506916 15507226 -70188528 - AluSx SINE Alu -8 304 1 813 269 113 45 chr15 15507226 15507295 -70188459 + L2 LINE L2 1276 1339 -1975 675 280 119 19 chr15 15507904 15508140 -70187614 - MIR SINE MIR -1 261 3 1507 269 62 72 chr15 15508331 15509090 -70186664 + L2 LINE L2 2303 3052 -261 896 249 42 117 chr15 15509098 15509555 -70186199 + MLT1G LTR MaLR 1 437 -131 1213 144 0 11 chr15 15509592 15509773 -70185981 - FRAM SINE Alu -5 171 1 692 220 82 69 chr15 15509841 15510073 -70185681 + L2 LINE L2 3074 3308 -5 2131 150 19 11 chr15 15510316 15510675 -70185079 + MLT1A1 LTR MaLR 4 365 0 2305 97 13 0 chr15 15511831 15512139 -70183615 - AluSx SINE Alu 0 312 1 206 271 29 57 chr15 15512300 15512370 -70183384 - L3 LINE CR1 -7 1570 1503 373 327 71 0 chr15 15512957 15513070 -70182684 + MIR3 SINE MIR 43 163 -45 262 348 30 30 chr15 15513104 15513268 -70182486 - MIR SINE MIR -50 212 49 28 48 0 0 chr15 15514303 15514345 -70181409 + AT_rich Low_complexity Low_complexity 1 42 0 5651 57 19 27 chr15 15514419 15514604 -70181150 - MER4E LTR ERV1 0 766 581 2181 107 4 0 chr15 15514604 15514907 -70180847 + AluSx SINE Alu 1 304 0 5651 57 19 27 chr15 15514907 15515491 -70180263 - MER4E LTR ERV1 -185 581 2 380 304 57 58 chr15 15517945 15518560 -70177194 - MER89-int LTR ERV1 -3070 3731 3118 1944 204 37 20 chr15 15518956 15519443 -70176311 - MER89-int LTR ERV1 -4062 4113 129 187 298 0 18 chr15 15520523 15520580 -70175174 + L3 LINE CR1 561 616 -961 4603 120 16 55 chr15 15521375 15522207 -70173547 - MER4E-int LTR ERV1 -5959 799 1 5147 78 38 28 chr15 15522207 15522551 -70173203 - MER4E LTR ERV1 0 766 427 2509 74 3 3 chr15 15522551 15522861 -70172893 + AluSp SINE Alu 1 310 -3 5147 78 38 28 chr15 15522861 15523274 -70172480 - MER4E LTR ERV1 -339 427 1 2271 93 33 3 chr15 15523384 15523684 -70172070 + AluSc SINE Alu 1 309 0 1933 112 45 0 chr15 15523946 15524250 -70171504 + AluSx SINE Alu 1 316 0 378 245 29 0 chr15 15524942 15525044 -70170710 - MIR3 SINE MIR -3 205 101 1295 169 89 0 chr15 15525618 15525855 -70169899 + Tigger7 DNA MER2_type 10 267 -2220 428 227 10 10 chr15 15525853 15525950 -70169804 + Tigger7 DNA MER2_type 2393 2489 -2 * 21 36 0 0 chr15 15526172 15526200 -70169554 + AT_rich Low_complexity Low_complexity 1 28 0 1891 139 14 23 chr15 15526374 15526720 -70169034 + L1PA16 LINE L1 5818 6160 -6 251 176 59 20 chr15 15526917 15527019 -70168735 + (TA)n Simple_repeat Simple_repeat 2 107 0 2206 133 0 0 chr15 15527394 15527695 -70168059 + AluSx SINE Alu 1 301 -11 591 231 7 42 chr15 15528398 15528541 -70167213 - L2 LINE L2 0 3313 3176 827 179 28 17 chr15 15529566 15529745 -70166009 + MER58C DNA MER1_type 29 209 -6 1678 124 0 0 chr15 15530195 15530420 -70165334 - AluSx SINE Alu -87 225 1 21 36 0 0 chr15 15530519 15530547 -70165207 + AT_rich Low_complexity Low_complexity 1 28 0 2765 224 101 47 chr15 15530681 15531594 -70164160 - L1MDa LINE L1 -5555 985 35 288 330 55 86 chr15 15531842 15532190 -70163564 + L2 LINE L2 2921 3257 -15 335 268 14 0 chr15 15532348 15532419 -70163335 - L2 LINE L2 -47 3225 3154 2149 114 0 20 chr15 15532659 15532957 -70162797 - AluSg SINE Alu -18 292 1 242 250 50 25 chr15 15533063 15533183 -70162571 + L1MC4a LINE L1 6052 6174 -1634 25 0 0 0 chr15 15533202 15533227 -70162527 + AT_rich Low_complexity Low_complexity 1 25 0 180 406 14 0 chr15 15533483 15533552 -70162202 + L2 LINE L2 3154 3223 -49 336 352 116 44 chr15 15534286 15534536 -70161218 + L2 LINE L2 2985 3252 -20 1794 58 9 4 chr15 15535384 15535610 -70160144 + AluSp SINE Alu 84 310 -3 2157 109 7 0 chr15 15535666 15535959 -70159795 + AluSp SINE Alu 1 295 -18 21 57 0 0 chr15 15536198 15536233 -70159521 + AT_rich Low_complexity Low_complexity 1 35 0 2121 108 24 0 chr15 15538147 15538435 -70157319 + AluSg SINE Alu 1 295 -15 2033 130 0 3 chr15 15538601 15538886 -70156868 + AluSg1 SINE Alu 1 284 -25 198 0 0 0 chr15 15538886 15538908 -70156846 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2093 106 31 14 chr15 15539112 15539404 -70156350 + AluSx SINE Alu 1 297 -15 186 353 0 0 chr15 15539549 15539617 -70156137 - MIR SINE MIR -122 86 19 304 127 139 25 chr15 15540820 15540899 -70154855 - MIR SINE MIR -55 207 120 543 253 186 9 chr15 15541838 15541961 -70153793 - MIR SINE MIR -1 261 161 2454 75 0 10 chr15 15541961 15542269 -70153485 + AluY SINE Alu 1 305 -6 543 253 186 9 chr15 15542269 15542366 -70153388 - MIR SINE MIR -101 161 2 1663 175 7 29 chr15 15542686 15542995 -70152759 - AluJo SINE Alu -10 302 1 319 204 0 139 chr15 15543304 15543412 -70152342 + MIR SINE MIR 57 149 -113 1870 135 0 8 chr15 15543420 15543687 -70152067 + AluSx SINE Alu 34 298 -14 774 165 0 24 chr15 15543764 15543891 -70151863 + FLAM_C SINE Alu 17 140 -3 903 131 0 0 chr15 15543936 15544058 -70151696 + AluSq/x SINE Alu 1 122 -191 2010 148 0 0 chr15 15544421 15544719 -70151035 - AluJb SINE Alu -14 298 1 205 182 11 80 chr15 15545109 15545197 -70150557 + A-rich Low_complexity Low_complexity 3 84 0 1896 139 7 13 chr15 15546307 15546608 -70149146 + AluJb SINE Alu 1 299 -13 317 201 120 19 chr15 15546646 15546750 -70149004 - L1MA10 LINE L1 -4 6158 6049 2075 134 0 0 chr15 15547865 15548156 -70147598 - AluSx SINE Alu -11 301 11 2044 105 0 21 chr15 15548495 15548781 -70146973 + AluSx SINE Alu 1 280 -32 411 276 188 0 chr15 15549027 15549197 -70146557 - L3 LINE CR1 -63 1514 1313 215 143 41 0 chr15 15549336 15549385 -70146369 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2128 105 0 36 chr15 15549645 15549951 -70145803 + AluSx SINE Alu 1 295 -17 21 82 0 0 chr15 15550603 15550652 -70145102 + AT_rich Low_complexity Low_complexity 1 49 0 2009 108 37 24 chr15 15550832 15551129 -70144625 + AluSx SINE Alu 1 301 -11 2259 106 0 20 chr15 15551647 15551950 -70143804 + AluSx SINE Alu 1 297 -15 2152 92 14 3 chr15 15552326 15552610 -70143144 + AluSx SINE Alu 1 287 -25 2293 75 7 0 chr15 15552624 15552918 -70142836 + AluY SINE Alu 1 296 -15 433 81 23 105 chr15 15552938 15553024 -70142730 + AluSg/x SINE Alu 217 295 -17 235 233 105 83 chr15 15553310 15553507 -70142247 - MIR SINE MIR -33 229 30 219 239 23 11 chr15 15553830 15553918 -70141836 + (CCG)n Simple_repeat Simple_repeat 1 89 0 1331 234 70 0 chr15 15554767 15555066 -70140688 + Charlie1 DNA MER1_type 1 320 -2441 2240 97 0 20 chr15 15555524 15555823 -70139931 + AluSx SINE Alu 5 297 -15 2661 138 7 5 chr15 15555834 15556248 -70139506 + L1MB3 LINE L1 5769 6183 0 1157 195 178 10 chr15 15556258 15556556 -70139198 + L1ME3A LINE L1 5808 6155 -15 317 290 232 5 chr15 15556577 15556801 -70138953 + L3 LINE CR1 1097 1371 -206 424 306 101 5 chr15 15556858 15557057 -70138697 + MIR SINE MIR 30 247 -15 251 135 14 0 chr15 15557148 15557191 -70138563 - MIR SINE MIR -90 118 74 374 0 22 0 chr15 15557436 15557482 -70138272 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr15 15557495 15557519 -70138235 + AT_rich Low_complexity Low_complexity 1 24 0 2439 94 3 0 chr15 15557647 15557954 -70137800 + AluSx SINE Alu 1 308 -4 336 239 37 18 chr15 15558868 15558977 -70136777 - LTR33 LTR ERVL -41 480 370 918 234 6 0 chr15 15559009 15559176 -70136578 - MER5A DNA MER1_type -1 188 21 1529 158 94 11 chr15 15559213 15559479 -70136275 + AluJo SINE Alu 12 299 -13 538 266 145 25 chr15 15559495 15559736 -70136018 - LTR33 LTR ERVL -250 271 2 216 249 130 43 chr15 15559832 15559985 -70135769 - MIR SINE MIR -58 204 32 1656 144 23 52 chr15 15560435 15560459 -70135295 + MER7A DNA MER2_type 1 24 -3014 2518 72 3 0 chr15 15560459 15560766 -70134988 - AluSp SINE Alu -5 308 1 1656 144 23 52 chr15 15560766 15560990 -70134764 + MER7A DNA MER2_type 24 240 -2798 2323 61 4 0 chr15 15560990 15561308 -70134446 - AluY SINE Alu 0 319 1 1656 144 23 52 chr15 15561308 15561363 -70134391 + MER7A DNA MER2_type 240 295 -51 1996 133 6 47 chr15 15561371 15561693 -70134061 + MER1B DNA MER1_type 31 339 0 300 208 0 0 chr15 15561694 15561747 -70134007 + MER7A DNA MER2_type 294 346 0 1816 129 116 6 chr15 15562070 15562381 -70133373 + MER47A DNA MER2_type 20 364 -2 2410 81 0 0 chr15 15563355 15563653 -70132101 + AluSc SINE Alu 1 298 -11 4247 187 42 57 chr15 15564128 15565296 -70130458 - L1MB8 LINE L1 -1 6177 4993 2443 67 3 7 chr15 15565296 15565596 -70130158 - AluY SINE Alu -12 299 1 4247 187 42 57 chr15 15565596 15566016 -70129738 - L1MB8 LINE L1 -1185 4993 4615 1449 223 3 26 chr15 15566016 15566325 -70129429 - AluJo SINE Alu -10 302 1 4247 187 42 57 chr15 15566325 15566450 -70129304 - L1MB8 LINE L1 -1563 4615 4490 261 57 0 0 chr15 15566459 15566494 -70129260 + (A)n Simple_repeat Simple_repeat 1 35 0 2082 119 11 0 chr15 15566510 15566795 -70128959 + AluSx SINE Alu 2 289 -23 4443 204 71 40 chr15 15566810 15567348 -70128406 + L1M4 LINE L1 2489 3009 -3137 2009 138 6 10 chr15 15567348 15567660 -70128094 + AluSq SINE Alu 1 311 -2 2126 100 0 37 chr15 15567663 15567963 -70127791 + AluSg SINE Alu 2 290 -20 4443 204 71 40 chr15 15567963 15568020 -70127734 + L1M4 LINE L1 3010 3064 -3082 2441 68 3 0 chr15 15568020 15568313 -70127441 + AluY SINE Alu 3 296 -15 4443 204 71 40 chr15 15568313 15568735 -70127019 + L1M4 LINE L1 3064 3471 -2675 911 165 0 0 chr15 15568735 15568868 -70126886 + FLAM_C SINE Alu 1 133 0 4443 204 71 40 chr15 15568868 15569205 -70126549 + L1M4 LINE L1 3471 3891 -2255 1848 153 3 20 chr15 15569211 15569512 -70126242 - AluJo SINE Alu -16 296 1 618 259 82 26 chr15 15569512 15569880 -70125874 - L1MEc LINE L1 -4127 2269 1878 344 320 8 0 chr15 15570006 15570134 -70125620 - L1MEc LINE L1 -4576 1820 1692 1439 115 99 12 chr15 15570137 15570389 -70125365 + LTR65 LTR ERV1 391 664 -5 2388 98 3 0 chr15 15570441 15570746 -70125008 + AluSq SINE Alu 1 306 -7 1026 113 0 0 chr15 15570753 15570886 -70124868 + AluSg/x SINE Alu 144 276 -34 186 43 0 0 chr15 15570890 15570913 -70124841 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 273 277 160 0 chr15 15570913 15571007 -70124747 + L2 LINE L2 3162 3270 -2 2370 110 51 25 chr15 15571007 15571362 -70124392 + THE1B LTR MaLR 1 364 0 7163 114 23 39 chr15 15571362 15572770 -70122984 + THE1B-int LTR MaLR 1 1329 -322 2464 57 7 3 chr15 15572934 15573231 -70122523 + AluY SINE Alu 1 298 -13 446 255 43 12 chr15 15573489 15573650 -70122104 - L1ME4a LINE L1 0 6121 5956 424 228 73 37 chr15 15573660 15573796 -70121958 - L2 LINE L2 -12 3301 3161 314 202 42 84 chr15 15573824 15573943 -70121811 - L1ME4a LINE L1 -172 5949 5836 272 366 35 53 chr15 15574100 15574299 -70121455 - L2 LINE L2 -225 3047 2846 2315 104 3 0 chr15 15574299 15574597 -70121157 + AluSx SINE Alu 1 299 -13 2273 103 0 10 chr15 15574597 15574909 -70120845 + AluSq SINE Alu 1 309 -4 272 366 35 53 chr15 15574909 15574935 -70120819 - L2 LINE L2 -424 2848 2825 2327 91 7 0 chr15 15576057 15576366 -70119388 - AluSp SINE Alu -2 311 1 2120 133 0 7 chr15 15576374 15576682 -70119072 - AluSx SINE Alu -6 306 1 343 357 13 26 chr15 15577027 15577181 -70118573 + MIR3 SINE MIR 51 202 -6 719 193 25 97 chr15 15577620 15577788 -70117966 - Charlie1 DNA MER1_type -1 2760 2612 2030 127 23 3 chr15 15577788 15578088 -70117666 + AluSq SINE Alu 1 306 -7 719 193 25 97 chr15 15578088 15578157 -70117597 - Charlie1 DNA MER1_type -149 2612 2540 428 228 13 0 chr15 15578157 15578236 -70117518 + MER2 DNA MER2_type 2 81 -264 1185 176 105 40 chr15 15578348 15578472 -70117282 - Charlie1 DNA MER1_type -223 2538 2424 1805 209 118 32 chr15 15578472 15578937 -70116817 - MLT1D LTR MaLR 0 505 1 1185 176 105 40 chr15 15578937 15579135 -70116619 - Charlie1 DNA MER1_type -337 2424 2195 1220 112 0 0 chr15 15579145 15579314 -70116440 + LTR26B LTR ERV1 1 169 -362 2395 90 10 0 chr15 15579316 15579616 -70116138 - AluSx SINE Alu -9 303 1 1025 121 0 34 chr15 15579616 15579765 -70115989 - AluSq/x SINE Alu -168 144 1 2241 124 87 3 chr15 15579777 15580132 -70115622 + LTR26B LTR ERV1 147 531 0 1442 194 39 0 chr15 15580139 15580420 -70115334 - Charlie1 DNA MER1_type -584 2177 1886 1146 173 97 59 chr15 15580420 15580914 -70114840 + MER34B LTR ERV1 1 565 0 969 132 123 174 chr15 15580914 15581006 -70114748 - Charlie1 DNA MER1_type -874 1887 1791 2622 42 3 0 chr15 15581006 15581315 -70114439 - AluY SINE Alu -1 310 1 2318 84 0 3 chr15 15581315 15581614 -70114140 - AluY SINE Alu -13 298 1 969 132 123 174 chr15 15581614 15581691 -70114063 - Charlie1 DNA MER1_type -969 1792 1713 2412 91 3 0 chr15 15581691 15582000 -70113754 - AluSq SINE Alu -3 310 1 969 132 123 174 chr15 15582000 15582172 -70113582 - Charlie1 DNA MER1_type -1048 1713 1562 3217 214 85 24 chr15 15582189 15582424 -70113330 - Charlie1 DNA MER1_type -1339 1422 1203 2087 123 7 20 chr15 15582424 15582726 -70113028 - AluSx SINE Alu -14 298 1 3217 214 85 24 chr15 15582726 15583279 -70112475 - Charlie1 DNA MER1_type -1558 1203 586 377 182 26 0 chr15 15583456 15583533 -70112221 + Tigger5 DNA MER2_type 2245 2323 0 661 217 11 33 chr15 15583946 15584126 -70111628 - MER104 DNA Tc2 -4 176 1 2080 130 0 34 chr15 15584169 15584203 -70111551 - AluSx SINE Alu 0 312 278 219 69 0 0 chr15 15584203 15584232 -70111522 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2080 130 0 34 chr15 15584232 15584520 -70111234 - AluSx SINE Alu -34 278 1 611 349 24 8 chr15 15584579 15584831 -70110923 - MIR SINE MIR 0 262 7 584 179 98 0 chr15 15585491 15585603 -70110151 - Charlie1b DNA MER1_type 0 523 401 2626 82 14 11 chr15 15585606 15585960 -70109794 + L1PA14 LINE L1 5804 6158 -3 1713 101 18 50 chr15 15586012 15586156 -70109598 - MER50 LTR ERV1 -23 711 579 2050 119 44 0 chr15 15586156 15586449 -70109305 + AluSq SINE Alu 1 306 -7 1713 101 18 50 chr15 15586449 15586582 -70109172 - MER50 LTR ERV1 -155 579 443 4643 113 188 89 chr15 15586586 15587877 -70107877 + pTR5 LTR ERV1 742 2295 -143 2136 141 70 27 chr15 15587891 15588303 -70107451 - MER50 LTR ERV1 -295 439 10 1648 173 16 90 chr15 15588637 15589081 -70106673 - Charlie1b DNA MER1_type -112 411 1 3148 133 9 11 chr15 15589199 15589412 -70106342 - L1MB3 LINE L1 -7 6176 5964 1738 141 10 35 chr15 15589412 15589724 -70106030 - AluJo SINE Alu -8 304 1 3148 133 9 11 chr15 15589724 15590036 -70105718 - L1MB3 LINE L1 -219 5964 5652 558 152 0 0 chr15 15590076 15590168 -70105586 - L1MB3 LINE L1 -519 5661 5570 180 0 0 0 chr15 15590238 15590258 -70105496 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2215 109 6 3 chr15 15590523 15590834 -70104920 + AluSx SINE Alu 1 312 0 351 0 0 0 chr15 15591817 15591856 -70103898 + (CA)n Simple_repeat Simple_repeat 1 39 0 2211 102 7 0 chr15 15592022 15592317 -70103437 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 15592671 15592741 -70103013 + CT-rich Low_complexity Low_complexity 2 70 0 2072 231 134 30 chr15 15592801 15593497 -70102257 + LTR50 LTR ERVL 4 771 -24 2437 66 3 7 chr15 15593546 15593849 -70101905 - AluSp SINE Alu -11 302 1 340 233 173 55 chr15 15594975 15595177 -70100577 - L1ME LINE L1 -372 5749 5524 2116 112 0 14 chr15 15595294 15595614 -70100140 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 15596209 15596234 -70099520 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 239 224 165 12 chr15 15596954 15597039 -70098715 + L1MDa LINE L1 1763 1860 -4680 22 0 0 0 chr15 15598605 15598627 -70097127 + AT_rich Low_complexity Low_complexity 1 22 0 258 220 85 0 chr15 15598706 15598765 -70096989 - MER91 DNA MER1_type 0 140 77 1164 166 50 55 chr15 15598939 15599258 -70096496 - MER33 DNA MER1_type -16 308 1 419 284 62 0 chr15 15599360 15599536 -70096218 + L1ME LINE L1 5387 5581 -540 249 209 0 0 chr15 15599669 15599736 -70096018 + (TA)n Simple_repeat Simple_repeat 2 68 0 335 266 57 8 chr15 15600734 15600858 -70094896 + LTR67 LTR ERVL 425 554 -3 239 247 130 0 chr15 15601234 15601311 -70094443 - L3 LINE CR1 -162 1415 1329 1214 316 116 30 chr15 15601325 15601482 -70094272 - L3 LINE CR1 -785 792 650 2359 93 0 3 chr15 15601482 15601783 -70093971 + AluSg SINE Alu 1 300 -10 1214 316 116 30 chr15 15601783 15602248 -70093506 - L3 LINE CR1 -927 650 117 1934 161 0 0 chr15 15602375 15602661 -70093093 - AluJo SINE Alu -24 288 3 395 247 105 40 chr15 15602741 15602988 -70092766 - L1ME4a LINE L1 -4 6117 5855 2314 91 7 0 chr15 15603018 15603315 -70092439 - AluSq SINE Alu -14 299 1 306 306 110 58 chr15 15603583 15603756 -70091998 - MIR SINE MIR -71 191 10 1944 95 7 3 chr15 15604038 15604321 -70091433 + L1PB2 LINE L1 5865 6148 -3 1278 116 0 0 chr15 15604489 15604670 -70091084 - AluSg/x SINE Alu -11 301 121 462 286 125 55 chr15 15704675 15705200 -69990554 - L1M4 LINE L1 -1205 3815 1203 1806 147 0 15 chr15 15705297 15705569 -69990185 + AluSg SINE Alu 3 270 -40 245 313 0 21 chr15 15705718 15705814 -69989940 + MIR SINE MIR 102 195 -67 180 0 0 0 chr15 15705820 15705840 -69989914 + (T)n Simple_repeat Simple_repeat 1 20 0 283 341 22 0 chr15 15707531 15707622 -69988132 + MIR3 SINE MIR 109 201 -7 191 310 17 0 chr15 15707763 15707821 -69987933 + MIR SINE MIR 32 90 -118 2262 109 0 3 chr15 15708506 15708810 -69986944 + AluY SINE Alu 1 303 -8 528 144 31 21 chr15 15708810 15708907 -69986847 - U6 snRNA snRNA -8 99 2 1795 163 3 10 chr15 15708967 15709267 -69986487 + AluJb SINE Alu 1 298 -14 2132 119 16 23 chr15 15709303 15709613 -69986141 - AluJb SINE Alu -4 308 1 413 284 84 26 chr15 15709721 15709876 -69985878 - MIR3 SINE MIR -31 177 14 1614 131 142 4 chr15 15712728 15713002 -69982752 - AluJb SINE Alu 0 312 1 571 180 99 0 chr15 15714005 15714149 -69981605 - MIR SINE MIR -10 252 93 373 261 23 39 chr15 15714708 15714838 -69980916 - MER94 DNA DNA 0 134 7 1172 200 5 9 chr15 15720037 15720252 -69975502 - AluJb SINE Alu -98 214 1 2269 105 0 10 chr15 15720272 15720577 -69975177 - AluSc SINE Alu -7 302 1 430 255 9 19 chr15 15720582 15720688 -69975066 - MIR SINE MIR -110 152 48 2292 101 0 7 chr15 15723160 15723468 -69972286 - AluSq SINE Alu -5 308 3 485 250 75 118 chr15 15723862 15724221 -69971533 - L1ME3A LINE L1 -169 6001 5659 1205 174 53 0 chr15 15724221 15724428 -69971326 - MER20 DNA MER1_type 0 219 2 485 250 75 118 chr15 15724428 15724468 -69971286 - L1ME3A LINE L1 -511 5659 5619 897 163 13 26 chr15 15724725 15724933 -69970821 - AluJb SINE Alu 0 338 133 261 271 28 55 chr15 15725033 15725214 -69970540 + C-rich Low_complexity Low_complexity 5 180 0 1311 223 11 14 chr15 15725569 15725856 -69969898 - AluSg SINE Alu -14 286 1 2372 65 0 13 chr15 15725863 15726173 -69969581 - AluY SINE Alu -5 306 1 1423 224 0 14 chr15 15726173 15726459 -69969295 - AluJo SINE Alu -30 282 1 757 216 0 0 chr15 15726465 15726590 -69969164 - FLAM_C SINE Alu -7 126 2 1886 162 3 13 chr15 15726643 15726952 -69968802 - AluJb SINE Alu -6 306 1 2114 114 41 0 chr15 15727915 15728205 -69967549 + AluSx SINE Alu 1 302 -10 1992 140 3 0 chr15 15731088 15731422 -69964332 + AluSq SINE Alu 1 313 0 2328 119 0 16 chr15 15731978 15732115 -69963639 + AluSq SINE Alu 1 139 -174 2271 108 0 25 chr15 15732115 15732431 -69963323 + AluSq SINE Alu 1 308 -5 2328 119 0 16 chr15 15732431 15732611 -69963143 + AluSq SINE Alu 139 313 0 267 281 0 0 chr15 15732615 15732704 -69963050 + L1MC4 LINE L1 6614 6702 -1340 330 330 10 0 chr15 15732705 15732808 -69962946 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 294 179 0 0 chr15 15732808 15732864 -69962890 + (TG)n Simple_repeat Simple_repeat 2 57 0 1232 252 38 64 chr15 15733070 15733156 -69962598 - L1MC/D LINE L1 -2051 5757 5670 1628 167 6 62 chr15 15733156 15733480 -69962274 + AluJo SINE Alu 1 306 -6 1232 252 38 64 chr15 15733480 15733540 -69962214 - L1MC/D LINE L1 -2138 5670 5610 2434 81 0 0 chr15 15733540 15733837 -69961917 + AluY SINE Alu 1 297 -14 1232 252 38 64 chr15 15733837 15734113 -69961641 - L1MC/D LINE L1 -2198 5610 5345 707 217 24 24 chr15 15734119 15734285 -69961469 - FRAM SINE Alu 0 166 1 1035 124 12 6 chr15 15734414 15734583 -69961171 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 15734583 15734652 -69961102 + MER41A LTR ERV1 400 468 -86 1538 152 0 0 chr15 15734668 15734925 -69960829 - L1MB5 LINE L1 -156 6018 5762 1789 164 37 17 chr15 15734935 15735234 -69960520 - AluJo SINE Alu -7 305 1 1650 151 13 51 chr15 15735267 15735578 -69960176 - AluJo SINE Alu 0 312 14 362 248 48 29 chr15 15737505 15737610 -69958144 - MIR SINE MIR 0 262 156 1092 223 103 13 chr15 15737610 15737910 -69957844 + MER46C DNA MER2_type 1 327 -11 646 247 135 46 chr15 15737912 15738378 -69957376 - MLT1F LTR MaLR -1 541 1 370 280 160 8 chr15 15738405 15738530 -69957224 - MIR SINE MIR -118 144 1 399 121 0 52 chr15 15738651 15738744 -69957010 - L1MB2 LINE L1 -16 6167 6068 297 221 45 162 chr15 15741649 15741803 -69953951 + MIR SINE MIR 34 169 -93 210 284 30 15 chr15 15742796 15742863 -69952891 + GA-rich Low_complexity Low_complexity 5 72 0 1836 157 26 26 chr15 15743619 15743925 -69951829 - AluJb SINE Alu -6 306 1 760 150 0 17 chr15 15744902 15745022 -69950732 + AluJo SINE Alu 19 136 -176 2221 130 0 3 chr15 15747862 15748161 -69947593 + AluSx SINE Alu 1 298 -14 676 211 27 0 chr15 15749267 15749414 -69946340 + MIR3 SINE MIR 33 183 -25 1934 169 0 0 chr15 15749429 15749725 -69946029 + AluJo SINE Alu 1 296 -16 1412 172 3 52 chr15 15756339 15756630 -69939124 - AluY SINE Alu -7 304 28 1133 87 0 0 chr15 15756843 15756981 -69938773 - AluY SINE Alu -173 138 1 2186 102 17 0 chr15 15757103 15757398 -69938356 + AluSx SINE Alu 1 300 -12 1289 117 16 11 chr15 15758260 15758448 -69937306 + AluSq SINE Alu 109 297 -16 2226 111 3 0 chr15 15758709 15759007 -69936747 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 15759797 15759820 -69935934 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 14883 31 0 0 chr15 15759882 15762388 -69933366 - L1PA3 LINE L1 0 6155 3648 23646 57 41 44 chr15 15762528 15765809 -69929945 - L1PA3 LINE L1 -2857 3289 20 25 51 0 0 chr15 15766434 15766473 -69929281 + GC_rich Low_complexity Low_complexity 1 39 0 2193 119 0 6 chr15 15768768 15769079 -69926675 + AluSx SINE Alu 1 309 -3 1818 114 99 4 chr15 15769226 15769498 -69926256 + AluSq SINE Alu 2 299 -14 1832 147 7 27 chr15 15769990 15770283 -69925471 - AluJb SINE Alu -25 287 1 2020 138 10 0 chr15 15770434 15770723 -69925031 + AluJb SINE Alu 3 294 -18 2021 132 56 0 chr15 15770976 15771295 -69924459 - MER1B DNA MER1_type 0 337 1 816 137 0 0 chr15 15771812 15771936 -69923818 + FRAM SINE Alu 38 161 -15 1811 125 55 14 chr15 15772152 15772441 -69923313 + AluSx SINE Alu 1 301 -11 580 198 62 62 chr15 15773312 15773424 -69922330 - MER104 DNA Tc2 -1721 177 63 2146 84 0 0 chr15 15773424 15773686 -69922068 + AluSc SINE Alu 35 296 -13 580 198 62 62 chr15 15773686 15773735 -69922019 - MER104 DNA Tc2 -1834 64 16 1411 181 58 29 chr15 15773792 15774069 -69921685 + AluJb SINE Alu 2 286 -26 2446 84 13 0 chr15 15774374 15774683 -69921071 + AluSp SINE Alu 1 313 0 447 287 13 7 chr15 15775687 15775837 -69919917 - MIR SINE MIR -15 247 97 2239 87 3 48 chr15 15776223 15776533 -69919221 + AluSg SINE Alu 1 296 -14 261 169 0 0 chr15 15777028 15777087 -69918667 + T-rich Low_complexity Low_complexity 1 59 0 1723 164 16 36 chr15 15777310 15777614 -69918140 + AluSx SINE Alu 2 299 -13 1947 133 7 31 chr15 15777781 15778075 -69917679 + AluSx SINE Alu 1 287 -25 264 30 0 0 chr15 15778075 15778108 -69917646 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1387 229 52 43 chr15 15779246 15779709 -69916045 + MLT1C LTR MaLR 1 467 0 681 234 0 58 chr15 15779802 15779973 -69915781 + AluJo SINE Alu 127 287 -25 1751 181 27 0 chr15 15779984 15780282 -69915472 + AluJb SINE Alu 5 310 -2 1601 208 103 40 chr15 15780304 15780513 -69915241 - L2 LINE L2 -55 3258 3063 2051 100 6 56 chr15 15780513 15780832 -69914922 - AluSx SINE Alu -9 303 1 1601 208 103 40 chr15 15780832 15781392 -69914362 - L2 LINE L2 -250 3063 2457 1546 123 25 0 chr15 15782952 15783188 -69912566 + AluSx SINE Alu 1 242 -70 811 201 52 0 chr15 15783355 15783509 -69912245 + FRAM SINE Alu 1 161 -15 420 313 50 6 chr15 15783888 15784067 -69911687 - L3 LINE CR1 -9 1568 1382 365 214 0 87 chr15 15784204 15784307 -69911447 - MIR SINE MIR -122 140 47 778 213 33 16 chr15 15784633 15784816 -69910938 + L1ME3 LINE L1 5967 6152 -10 791 194 32 11 chr15 15785100 15785286 -69910468 + L1MB7 LINE L1 5929 6118 -66 1008 119 7 13 chr15 15785286 15785437 -69910317 + AluSq/x SINE Alu 1 150 -163 396 0 0 0 chr15 15785768 15785812 -69909942 + (CA)n Simple_repeat Simple_repeat 1 44 0 734 182 8 0 chr15 15786129 15786250 -69909504 + FLAM_C SINE Alu 2 123 -20 1470 160 0 35 chr15 15786276 15786532 -69909222 + AluJb SINE Alu 11 257 -55 2123 108 0 0 chr15 15786619 15786896 -69908858 + AluYa5 SINE Alu 1 277 -34 236 291 12 12 chr15 15787059 15787145 -69908609 - AluS SINE Alu -206 97 12 203 191 0 48 chr15 15787505 15787547 -69908207 + MER5A DNA MER1_type 65 104 -85 1367 107 93 0 chr15 15787578 15787783 -69907971 + AluSq SINE Alu 1 224 -89 198 233 0 0 chr15 15787907 15787967 -69907787 + CT-rich Low_complexity Low_complexity 1 60 0 396 103 0 52 chr15 15787996 15788054 -69907700 - LTR8 LTR ERV1 -88 603 549 1952 132 7 7 chr15 15788063 15788350 -69907404 - AluSx SINE Alu -25 287 1 333 237 52 21 chr15 15788457 15788554 -69907200 - L2 LINE L2 -5 3308 3209 1232 154 0 10 chr15 15788655 15788850 -69906904 - AluJo SINE Alu -25 287 95 193 250 19 0 chr15 15788850 15788902 -69906852 + L2 LINE L2 2339 2391 -923 235 156 89 0 chr15 15789557 15789602 -69906152 + L2 LINE L2 3262 3310 -3 * 535 246 78 28 chr15 15789600 15789691 -69906063 - MIR SINE MIR -34 228 143 237 83 0 0 chr15 15789691 15789727 -69906027 + (CAA)n Simple_repeat Simple_repeat 2 37 0 535 246 78 28 chr15 15789727 15789814 -69905940 - MIR SINE MIR -119 143 41 431 295 0 8 chr15 15790069 15790191 -69905563 + MIR3 SINE MIR 58 178 -30 718 194 0 0 chr15 15790200 15790334 -69905420 + FRAM SINE Alu 40 173 -3 2029 140 3 7 chr15 15790550 15790850 -69904904 + AluSx SINE Alu 1 299 -13 2214 91 7 19 chr15 15790853 15791162 -69904592 + AluSx SINE Alu 8 312 0 327 248 53 35 chr15 15791401 15791514 -69904240 + MIR3 SINE MIR 87 201 -7 2069 118 7 20 chr15 15792022 15792326 -69903428 + AluSx SINE Alu 1 300 -12 462 18 0 0 chr15 15792326 15792381 -69903373 + (TA)n Simple_repeat Simple_repeat 2 56 0 831 191 51 0 chr15 15792475 15792632 -69903122 + FRAM SINE Alu 1 164 -12 439 319 48 11 chr15 15793008 15793196 -69902558 - L3 LINE CR1 -9 1568 1374 743 188 32 11 chr15 15793691 15793877 -69901877 + L1MB7 LINE L1 5929 6118 -66 2443 82 10 0 chr15 15793877 15794181 -69901573 + AluSq SINE Alu 1 307 -6 306 256 0 39 chr15 15794304 15794382 -69901372 + MER5A DNA MER1_type 2 76 -113 22 0 0 0 chr15 15794397 15794419 -69901335 + AT_rich Low_complexity Low_complexity 1 22 0 1670 88 0 0 chr15 15794426 15794631 -69901123 + AluSg SINE Alu 1 205 -105 269 186 57 43 chr15 15794781 15794851 -69900903 + L1ME3 LINE L1 6004 6074 -88 981 252 19 0 chr15 15794883 15795097 -69900657 + MER82 DNA MER2_type 436 653 0 282 172 31 0 chr15 15795234 15795298 -69900456 - MLT1J2 LTR MaLR -316 134 69 1972 154 3 3 chr15 15795397 15795689 -69900065 + AluSx SINE Alu 1 292 -20 668 115 0 0 chr15 15795700 15795804 -69899950 - AluSp/q SINE Alu -4 309 206 189 171 0 0 chr15 15796046 15796081 -69899673 + MIR SINE MIR 110 144 -118 2354 88 7 3 chr15 15796081 15796386 -69899368 + AluSc SINE Alu 1 306 -3 2070 112 16 35 chr15 15796386 15796698 -69899056 + AluSx SINE Alu 5 310 -2 375 256 51 34 chr15 15796930 15797047 -69898707 + MIR3 SINE MIR 83 201 -7 297 0 0 0 chr15 15797603 15797636 -69898118 + (CTG)n Simple_repeat Simple_repeat 1 33 0 905 218 86 25 chr15 15798945 15799188 -69896566 + MIR SINE MIR 3 260 -2 539 260 202 36 chr15 15800952 15801175 -69894579 + MIR SINE MIR 3 262 0 474 254 42 68 chr15 15801304 15801499 -69894255 + MIR3 SINE MIR 20 212 -50 284 204 0 19 chr15 15801466 15801520 -69894234 - L2 LINE L2 -19 3253 3201 * 597 173 0 0 chr15 15802519 15802623 -69893131 - U13 snRNA snRNA 0 104 1 2227 106 3 19 chr15 15802659 15802970 -69892784 + AluSg SINE Alu 5 310 0 405 0 0 0 chr15 15805266 15805311 -69890443 + (CA)n Simple_repeat Simple_repeat 2 46 0 374 261 22 0 chr15 15805574 15805666 -69890088 - MIR3 SINE MIR -17 191 98 1557 153 0 124 chr15 15806099 15806263 -69889491 - AluJo SINE Alu -15 297 195 2201 111 0 16 chr15 15806263 15806570 -69889184 - AluSg SINE Alu -8 302 1 1557 153 0 124 chr15 15806570 15806744 -69889010 - AluJo SINE Alu -117 195 1 391 198 50 40 chr15 15807066 15807167 -69888587 - L2 LINE L2 -8 3264 3163 791 297 36 9 chr15 15807237 15807459 -69888295 + MIR SINE MIR 35 262 0 2298 91 10 0 chr15 15807568 15807864 -69887890 - AluSx SINE Alu -11 301 3 1027 163 0 53 chr15 15807866 15808056 -69887698 + AluJb SINE Alu 115 294 -18 316 129 16 16 chr15 15808061 15808123 -69887631 + AluJ/FLAM SINE Alu 2 63 -239 273 222 0 0 chr15 15808223 15808286 -69887468 + T-rich Low_complexity Low_complexity 1 63 0 230 284 0 15 chr15 15808310 15808377 -69887377 + CT-rich Low_complexity Low_complexity 1 66 0 909 194 30 30 chr15 15808504 15808705 -69887049 - AluSq SINE Alu -74 239 39 222 323 21 21 chr15 15808720 15808816 -69886938 + MIR SINE MIR 45 140 -68 193 286 20 92 chr15 15809533 15809631 -69886123 + L3 LINE CR1 945 1035 -542 517 307 213 31 chr15 15809700 15809987 -69885767 + L3 LINE CR1 1219 1557 -20 1992 131 0 0 chr15 15810157 15810431 -69885323 - AluSx SINE Alu 0 312 39 2273 95 0 0 chr15 15810551 15810867 -69884887 - AluSg SINE Alu 0 316 1 896 148 0 7 chr15 15811033 15811168 -69884586 + AluSg SINE Alu 3 136 -174 1176 136 0 17 chr15 15811504 15811681 -69884073 - AluSq SINE Alu -48 265 92 2141 120 3 3 chr15 15812344 15812643 -69883111 - AluSc SINE Alu -10 299 1 1577 176 4 8 chr15 15813813 15814075 -69881679 - AluSx SINE Alu -51 261 1 2134 147 16 0 chr15 15814201 15814507 -69881247 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 15814699 15814753 -69881001 + AT_rich Low_complexity Low_complexity 1 54 0 810 103 0 0 chr15 15815016 15815123 -69880631 - U6 snRNA snRNA 0 107 1 382 263 61 0 chr15 15815212 15815326 -69880428 - MIR SINE MIR 0 262 142 2359 91 3 3 chr15 15815332 15815628 -69880126 - AluSq SINE Alu -17 296 1 2439 98 0 0 chr15 15815642 15815949 -69879805 - AluSc SINE Alu -2 307 1 2220 77 3 70 chr15 15816611 15816923 -69878831 - AluSg SINE Alu -19 291 1 340 318 27 7 chr15 15817309 15817457 -69878297 + MIR SINE MIR 97 247 -15 835 160 0 0 chr15 15817869 15817994 -69877760 - FLAM_C SINE Alu -17 126 2 280 140 105 0 chr15 15818046 15818103 -69877651 + HsTC2 DNA Tc2 2 64 -1834 605 128 0 3 chr15 15818103 15818316 -69877438 - AluSc SINE Alu -7 302 35 236 286 80 18 chr15 15818317 15818429 -69877325 + MER104 DNA Tc2 59 177 -3 1056 152 71 41 chr15 15819301 15819498 -69876256 - AluSc SINE Alu -8 301 99 2232 124 0 0 chr15 15820045 15820352 -69875402 + AluSx SINE Alu 1 307 -5 735 177 0 0 chr15 15820537 15820661 -69875093 - FRAM SINE Alu -15 161 38 2486 81 0 0 chr15 15820824 15821133 -69874621 + AluY SINE Alu 1 309 -2 2092 132 56 0 chr15 15821513 15821832 -69873922 + MER1B DNA MER1_type 1 337 0 2022 140 11 0 chr15 15822085 15822370 -69873384 - AluJb SINE Alu -22 290 3 1778 181 0 17 chr15 15822521 15822819 -69872935 + AluJb SINE Alu 1 293 -19 2483 64 0 3 chr15 15823112 15823408 -69872346 + AluY SINE Alu 1 295 -16 1887 113 98 4 chr15 15823623 15823898 -69871856 - AluSq SINE Alu -12 301 1 230 290 19 42 chr15 15824047 15824173 -69871581 + GA-rich Low_complexity Low_complexity 5 212 0 433 329 0 20 chr15 15824195 15824341 -69871413 + G-rich Low_complexity Low_complexity 3 145 0 752 233 67 0 chr15 15824446 15824626 -69871128 - L1M4 LINE L1 -3364 2782 2591 1022 215 0 16 chr15 15824631 15824822 -69870932 - AluJb SINE Alu -7 305 118 2248 113 3 6 chr15 15824932 15825243 -69870511 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 15826568 15826593 -69869161 + (A)n Simple_repeat Simple_repeat 1 25 0 2306 61 0 0 chr15 15826595 15826900 -69868854 + AluY SINE Alu 3 307 0 205 283 9 38 chr15 15827283 15827389 -69868365 + (CCCCAG)n Simple_repeat Simple_repeat 2 104 0 2300 92 3 3 chr15 15829321 15829615 -69866139 + AluSp SINE Alu 1 294 -19 2290 101 3 7 chr15 15829899 15830196 -69865558 - AluSq SINE Alu -17 296 1 2112 86 18 0 chr15 15830201 15830514 -69865240 - AluSx SINE Alu 0 318 1 925 71 9 0 chr15 15830658 15830771 -69864983 + AluSq/x SINE Alu 22 135 -178 1648 162 6 60 chr15 15830771 15831086 -69864668 + AluJb SINE Alu 1 298 -14 604 48 48 0 chr15 15831201 15831285 -69864469 - AluSx SINE Alu -17 293 206 869 130 0 71 chr15 15831287 15831441 -69864313 - AluSx SINE Alu -169 143 1 2262 66 24 0 chr15 15832237 15832524 -69863230 + AluY SINE Alu 1 294 -17 2249 116 0 3 chr15 15832589 15832890 -69862864 + AluSg SINE Alu 1 300 -10 309 234 75 0 chr15 15834080 15834174 -69861580 - HsTC2 DNA Tc2 0 1898 1798 2067 108 0 0 chr15 15834834 15835102 -69860652 - AluSx SINE Alu -30 282 15 2456 98 0 0 chr15 15835853 15836159 -69859595 + AluSc SINE Alu 1 306 -3 1309 172 134 15 chr15 15836200 15836468 -69859286 + AluJo SINE Alu 1 300 -12 1386 160 143 0 chr15 15836469 15836707 -69859047 + AluJb SINE Alu 24 295 -17 2237 104 0 7 chr15 15836783 15837082 -69858672 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 15837630 15837651 -69858103 + AT_rich Low_complexity Low_complexity 1 21 0 638 200 39 39 chr15 15837702 15837882 -69857872 + AluSq SINE Alu 121 300 -13 443 267 127 0 chr15 15837890 15838040 -69857714 + MIR SINE MIR 71 239 -23 186 333 0 64 chr15 15838355 15838433 -69857321 + MER5A DNA MER1_type 95 167 -22 * 216 306 0 32 chr15 15838381 15838443 -69857311 - MER5B DNA MER1_type -104 74 15 504 244 36 65 chr15 15838933 15839101 -69856653 - L2 LINE L2 0 3313 3151 485 225 126 9 chr15 15839105 15839216 -69856538 + FLAM_A SINE Alu 1 124 -9 2638 40 0 0 chr15 15839227 15839524 -69856230 + AluY SINE Alu 1 297 -14 2153 106 0 11 chr15 15839529 15839812 -69855942 + AluSg SINE Alu 1 280 -30 813 130 13 155 chr15 15839857 15839913 -69855841 + L1MB3 LINE L1 5444 5506 -677 2302 78 27 0 chr15 15839913 15840209 -69855545 + AluSp SINE Alu 1 304 -9 813 130 13 155 chr15 15840209 15840327 -69855427 + L1MB3 LINE L1 5506 5639 -544 2118 138 3 10 chr15 15840327 15840639 -69855115 + AluSx SINE Alu 1 310 -2 2146 136 7 3 chr15 15840644 15840953 -69854801 + AluSx SINE Alu 1 310 -2 2265 88 0 0 chr15 15840959 15841265 -69854489 + AluY SINE Alu 1 306 0 813 130 13 155 chr15 15841265 15841314 -69854440 + L1MB3 LINE L1 5594 5648 -535 697 220 105 31 chr15 15841317 15841508 -69854246 - MER6B DNA MER2_type -5 205 1 916 154 24 12 chr15 15841521 15841690 -69854064 + L1MB3 LINE L1 5679 5849 -334 2262 78 7 36 chr15 15841754 15842061 -69853693 + AluSq SINE Alu 1 298 -15 1844 162 3 3 chr15 15842072 15842369 -69853385 + AluJo SINE Alu 14 310 -2 254 176 88 77 chr15 15842369 15842460 -69853294 + L1MC4a LINE L1 5726 5817 -1991 2357 70 0 10 chr15 15842481 15842781 -69852973 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 15842781 15842809 -69852945 + AT_rich Low_complexity Low_complexity 1 28 0 2392 79 3 13 chr15 15842908 15843211 -69852543 + AluY SINE Alu 1 300 -11 228 194 108 43 chr15 15843246 15843339 -69852415 + L1MC4a LINE L1 6074 6172 -1636 2451 74 3 0 chr15 15844182 15844481 -69851273 + AluSp SINE Alu 2 301 -12 2200 126 0 0 chr15 15845242 15845544 -69850210 - AluSq SINE Alu -11 302 1 315 302 40 40 chr15 15845569 15845695 -69850059 - MIR3 SINE MIR -48 160 35 1698 166 3 18 chr15 15845885 15846168 -69849586 + AluJo SINE Alu 15 293 -19 21 0 0 0 chr15 15847665 15847686 -69848068 + AT_rich Low_complexity Low_complexity 1 21 0 2314 103 0 7 chr15 15847698 15848008 -69847746 + AluSp SINE Alu 5 312 -1 2189 110 20 0 chr15 15848126 15848425 -69847329 + AluSg SINE Alu 5 309 -1 888 114 14 57 chr15 15848451 15848591 -69847163 + AluJo SINE Alu 1 134 -178 207 277 0 0 chr15 15848941 15849006 -69846748 + T-rich Low_complexity Low_complexity 1 65 0 2182 87 7 7 chr15 15849534 15849822 -69845932 + AluSq SINE Alu 9 296 -17 349 198 0 6 chr15 15849977 15850049 -69845705 - AluSp SINE Alu -107 196 136 2041 83 69 7 chr15 15851198 15851487 -69844267 - AluSp SINE Alu -6 307 1 507 209 310 6 chr15 15852278 15852436 -69843318 + MER3 DNA MER1_type 4 209 0 3956 164 58 4 chr15 15902970 15904263 -69791491 - L1PA15 LINE L1 -338 5827 4470 2256 163 9 0 chr15 15905040 15905383 -69790371 + MER7A DNA MER2_type 2 345 -1 26 0 0 0 chr15 15905669 15905695 -69790059 + AT_rich Low_complexity Low_complexity 1 26 0 298 0 23 23 chr15 15906119 15906162 -69789592 + (TG)n Simple_repeat Simple_repeat 1 43 0 212 271 0 34 chr15 15906258 15906317 -69789437 + MIR SINE MIR 14 70 -192 5765 21 6 0 chr15 15906430 15907091 -69788663 - L1P LINE L1 -1592 4554 3890 575 56 14 0 chr15 15907084 15907155 -69788599 + L1P LINE L1 3788 3859 -2287 * 1808 125 0 4 chr15 15907873 15908129 -69787625 + AluSx SINE Alu 44 298 -14 24 0 0 0 chr15 15908264 15908288 -69787466 + AT_rich Low_complexity Low_complexity 1 24 0 1318 181 49 29 chr15 15908477 15908858 -69786896 + L1M4 LINE L1 5059 5447 -727 295 357 159 19 chr15 15909221 15909663 -69786091 - L2 LINE L2 -84 3229 2728 233 316 92 0 chr15 15910098 15910196 -69785558 - MIR SINE MIR -30 232 126 180 0 0 0 chr15 15911902 15911922 -69783832 + (T)n Simple_repeat Simple_repeat 1 20 0 2908 229 63 29 chr15 15913806 15916224 -69779530 - L1M4 LINE L1 -1236 4910 2272 1211 206 67 58 chr15 15916237 15916597 -69779157 - L1ME2 LINE L1 -2 6162 5800 243 278 67 0 chr15 15916922 15917012 -69778742 + MIR3 SINE MIR 100 195 -13 231 204 0 0 chr15 15917793 15917842 -69777912 + (CAAAG)n Simple_repeat Simple_repeat 2 50 0 242 260 65 52 chr15 15918380 15918534 -69777220 + L1ME4a LINE L1 5840 5995 -126 438 337 195 21 chr15 15919147 15919664 -69776090 + L3 LINE CR1 968 1574 -3 199 196 43 0 chr15 15921170 15921216 -69774538 - MIR SINE MIR 0 262 215 733 269 60 67 chr15 15921970 15922301 -69773453 + L2 LINE L2 2985 3313 0 510 147 53 11 chr15 15922479 15922574 -69773180 + L1PA15 LINE L1 6059 6157 -8 848 214 0 0 chr15 15922917 15923076 -69772678 + FRAM SINE Alu 1 158 -18 3174 228 43 52 chr15 15923556 15924889 -69770865 - L1ME1 LINE L1 -23 6423 5088 627 301 27 35 chr15 15925178 15925437 -69770317 + MIR SINE MIR 2 258 -4 621 260 128 23 chr15 15926345 15926787 -69768967 + LTR33 LTR ERVL 1 521 0 218 200 55 36 chr15 15926860 15926915 -69768839 - MIR SINE MIR -12 250 195 637 235 86 6 chr15 15926988 15927150 -69768604 - MIR SINE MIR -67 195 21 254 212 47 12 chr15 15928284 15928369 -69767385 - L1ME1 LINE L1 -4333 2093 2006 305 223 11 0 chr15 15928369 15928463 -69767291 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 816 310 72 34 chr15 15928622 15929067 -69766687 - LTR16B LTR ERVL -2 462 1 355 307 104 12 chr15 15930865 15931028 -69764726 + MIR SINE MIR 12 189 -73 1360 107 22 45 chr15 15931300 15931524 -69764230 - L1MA4 LINE L1 -2 6298 6080 1386 229 10 7 chr15 15932110 15932403 -69763351 - AluJo SINE Alu -18 294 1 1270 307 100 28 chr15 15932459 15933281 -69762473 - L2 LINE L2 -615 2699 1819 22 0 0 0 chr15 15933484 15933506 -69762248 + AT_rich Low_complexity Low_complexity 1 22 0 1616 232 47 7 chr15 15935204 15935626 -69760128 - Charlie4a DNA MER1_type -1 507 69 753 131 0 0 chr15 15935638 15935737 -69760017 - AluSg/x SINE Alu -26 286 188 1624 123 0 0 chr15 15935737 15935956 -69759798 - AluSx SINE Alu -93 219 1 259 252 75 9 chr15 15937609 15937716 -69758038 - MIR3 SINE MIR -10 198 85 2138 179 35 98 chr15 15937815 15938420 -69757334 + MLT1F1 LTR MaLR 1 567 0 304 225 31 78 chr15 15938782 15938911 -69756843 + MIR SINE MIR 119 241 -21 3300 167 49 36 chr15 15938954 15939647 -69756107 - L1MA8 LINE L1 -4 6287 5586 235 192 0 123 chr15 15939659 15939732 -69756022 + MLT1B LTR MaLR 1 64 -326 8281 18 0 1 chr15 15939832 15941185 -69754569 + L1PA2 LINE L1 4803 6154 -1 303 261 91 10 chr15 15941503 15941602 -69754152 - MIR SINE MIR -22 186 79 3315 79 18 20 chr15 15941922 15942367 -69753387 - MLT2A1 LTR ERVL 0 444 1 202 255 135 92 chr15 15942494 15942635 -69753119 - MER5A DNA MER1_type 0 189 43 361 250 40 48 chr15 15942965 15943089 -69752665 + MIR SINE MIR 20 142 -66 306 0 0 0 chr15 15943431 15943465 -69752289 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1645 197 0 7 chr15 15943465 15943743 -69752011 - AluJo SINE Alu -32 280 5 465 143 0 14 chr15 15944371 15944441 -69751313 + Tigger2 DNA MER2_type 1 69 -2649 * 2154 138 128 20 chr15 15944424 15944830 -69750924 + Tigger2 DNA MER2_type 2267 2716 -2 1709 193 5 108 chr15 15944830 15945042 -69750712 - MLT1B LTR MaLR 0 390 244 1806 103 0 0 chr15 15945042 15945276 -69750478 - AluSg/x SINE Alu -8 304 71 1709 193 5 108 chr15 15945276 15945498 -69750256 - MLT1B LTR MaLR -146 244 1 776 180 16 139 chr15 15945744 15945989 -69749765 - MLT1A1 LTR MaLR -34 331 117 182 274 69 49 chr15 15946968 15947070 -69748684 + L2 LINE L2 2956 3059 -213 257 133 44 0 chr15 15947176 15947221 -69748533 + L2 LINE L2 3267 3313 0 574 332 57 8 chr15 15947385 15947629 -69748125 - MIR SINE MIR -6 256 1 563 301 66 0 chr15 15948850 15949033 -69746721 - MIR SINE MIR -66 196 2 855 240 20 10 chr15 15949108 15949312 -69746442 + MIR SINE MIR 57 262 0 235 312 46 37 chr15 15949740 15949849 -69745905 + L2 LINE L2 3150 3259 -13 207 69 0 0 chr15 15949850 15949879 -69745875 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1933 136 75 36 chr15 15950079 15950440 -69745314 + THE1C LTR MaLR 1 375 0 939 186 12 12 chr15 15951434 15951606 -69744148 + MER5A DNA MER1_type 15 186 -3 238 250 355 0 chr15 15951638 15951762 -69743992 + MER5B DNA MER1_type 8 175 -3 620 226 226 57 chr15 15952187 15952501 -69743253 + MLT1G1 LTR MaLR 222 588 -7 210 156 0 0 chr15 15952709 15952754 -69743000 + (CCCTAG)n Simple_repeat Simple_repeat 2 46 0 266 314 13 56 chr15 15952930 15953055 -69742699 + MIR3 SINE MIR 57 177 -31 180 0 0 0 chr15 15953317 15953337 -69742417 + (CAGCC)n Simple_repeat Simple_repeat 1 20 0 202 347 144 41 chr15 15953697 15953968 -69741786 - L3b LINE CR1 -8 1575 1277 283 226 323 13 chr15 15954422 15954577 -69741177 + LTR41 LTR ERVL 3 205 -568 443 245 106 37 chr15 15954734 15954979 -69740775 + LTR41 LTR ERVL 506 767 -6 435 200 0 0 chr15 15955003 15955083 -69740671 - MIR SINE MIR -70 192 113 182 331 44 52 chr15 15955135 15955271 -69740483 + MIR3 SINE MIR 43 177 -31 198 238 24 0 chr15 15955840 15955882 -69739872 - MIR SINE MIR -18 244 202 301 345 73 44 chr15 15956070 15956345 -69739409 + L2 LINE L2 2834 3116 -197 319 262 124 28 chr15 15956589 15956734 -69739020 + MIR3 SINE MIR 23 181 -27 648 241 50 54 chr15 15956755 15956996 -69738758 - MIR SINE MIR -4 258 19 182 310 23 69 chr15 15957794 15957881 -69737873 + MER5A DNA MER1_type 60 142 -47 21 36 0 0 chr15 15959715 15959743 -69736011 + AT_rich Low_complexity Low_complexity 1 28 0 311 308 33 25 chr15 15960056 15960176 -69735578 + L2 LINE L2 3189 3309 -4 324 0 0 0 chr15 15962539 15962575 -69733179 + (TG)n Simple_repeat Simple_repeat 1 36 0 250 267 122 0 chr15 15962720 15962810 -69732944 + MIR3 SINE MIR 3 103 -105 277 244 24 104 chr15 15962824 15962988 -69732766 - L2 LINE L2 -179 3093 2943 659 329 99 14 chr15 15966019 15966311 -69729443 - MLT1J LTR MaLR -194 317 1 243 274 24 12 chr15 15966635 15966719 -69729035 + L1 LINE L1 4884 4968 -1178 254 346 12 38 chr15 15968121 15968330 -69727424 - MIR SINE MIR -39 223 22 341 300 31 23 chr15 15969089 15969219 -69726535 + L2 LINE L2 3182 3312 -1 890 128 0 8 chr15 15969535 15969668 -69726086 - AluSg/x SINE Alu -9 303 172 4948 173 120 12 chr15 15970384 15971362 -69724392 - Tigger6a DNA MER2_type 0 1083 1 260 182 18 0 chr15 15971660 15971715 -69724039 + L2 LINE L2 2997 3052 -220 297 280 97 0 chr15 15971742 15971835 -69723919 + L2 LINE L2 3169 3270 -2 364 234 0 13 chr15 15973153 15973230 -69722524 - MLT1A1 LTR MaLR -289 76 1 187 202 24 83 chr15 15973249 15973333 -69722421 + L3 LINE CR1 1242 1320 -257 2104 180 38 27 chr15 15973949 15974490 -69721264 - MLT2A2 LTR ERVL -7 547 1 2104 171 113 8 chr15 15974599 15974990 -69720764 - MSTB1 LTR MaLR 0 432 1 440 220 284 0 chr15 15975617 15975758 -69719996 + MER5A DNA MER1_type 8 188 -1 679 264 30 0 chr15 15975767 15975934 -69719820 - MER5B DNA MER1_type -6 172 1 3647 126 34 0 chr15 15976029 15976562 -69719192 - L1PA16 LINE L1 -3 6163 5613 2231 109 0 6 chr15 15977110 15977422 -69718332 + AluY SINE Alu 2 311 0 1147 108 38 0 chr15 15977422 15977579 -69718175 + AluSp SINE Alu 134 296 -17 360 298 0 26 chr15 15977910 15978024 -69717730 + MIR3 SINE MIR 69 179 -29 1415 253 48 5 chr15 15978290 15978709 -69717045 + L2 LINE L2 1829 2265 -1049 443 255 134 19 chr15 15980642 15980799 -69714955 - MER5A DNA MER1_type -14 175 1 189 241 0 0 chr15 15982591 15982645 -69713109 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 326 109 0 chr15 15982647 15982739 -69713015 + L2 LINE L2 3152 3253 -19 2045 149 0 7 chr15 15985851 15986147 -69709607 + AluSx SINE Alu 1 294 -18 1536 168 77 157 chr15 15986403 15986950 -69708804 - MLT1D LTR MaLR 0 505 3 802 307 41 28 chr15 15986950 15987312 -69708442 + LTR16A LTR ERVL 78 444 -6 529 323 49 0 chr15 15987318 15987541 -69708213 + HERV16 LTR ERVL 1 234 -4762 1210 293 79 15 chr15 15987795 15988249 -69707505 + HERV16 LTR ERVL 590 1072 -3924 2469 78 0 3 chr15 15988495 15988804 -69706950 + AluY SINE Alu 1 308 -3 1278 261 35 13 chr15 15988805 15989123 -69706631 + HERV16 LTR ERVL 1713 2037 -2959 8977 187 55 19 chr15 15989137 15991200 -69704554 + L1MA9 LINE L1 3184 5320 -826 30 69 0 0 chr15 15991200 15991258 -69704496 + AT_rich Low_complexity Low_complexity 1 58 0 5335 169 25 6 chr15 15991258 15992242 -69703512 + L1MA9 LINE L1 5305 6308 -4 259 229 0 0 chr15 15992263 15992311 -69703443 + HERV16 LTR ERVL 3237 3284 -1712 * 1828 328 64 30 chr15 15992303 15993956 -69701798 + HERV16 LTR ERVL 3617 5365 -399 1184 266 52 23 chr15 15994134 15994521 -69701233 + LTR16A LTR ERVL 31 428 -22 533 235 105 6 chr15 15994670 15994832 -69700922 + L1ME4a LINE L1 5725 5902 -219 442 257 124 0 chr15 15996269 15996374 -69699380 - L2 LINE L2 -5 3308 3191 471 281 51 22 chr15 15996915 15997093 -69698661 + MIR SINE MIR 7 189 -73 436 240 22 77 chr15 15997931 15998114 -69697640 + MER5B DNA MER1_type 3 175 -3 232 344 165 19 chr15 15999499 15999711 -69696043 - MIR SINE MIR 0 262 20 329 341 36 0 chr15 16000164 16000302 -69695452 + MIR SINE MIR 2 144 -118 1524 54 21 0 chr15 16001077 16001263 -69694491 + MER107 DNA MER1_type 1 190 -7 431 284 45 80 chr15 16001549 16001598 -69694156 - MER5A DNA MER1_type -16 173 124 2195 120 3 0 chr15 16001598 16001897 -69693857 + AluSq SINE Alu 1 300 -13 431 284 45 80 chr15 16001897 16002023 -69693731 - MER5A DNA MER1_type -65 124 4 336 260 161 20 chr15 16003516 16003770 -69691984 - L1ME4a LINE L1 -2 6119 5830 * 381 292 65 77 chr15 16003740 16004162 -69691592 - L1ME4a LINE L1 -768 5378 5106 268 275 0 11 chr15 16004266 16004357 -69691397 - L1MC4a LINE L1 -1748 6060 5971 270 229 86 38 chr15 16005003 16005108 -69690646 - L1P LINE L1 -1134 5012 4903 518 250 123 37 chr15 16005116 16005360 -69690394 - L1ME4a LINE L1 -1303 4843 4579 2575 57 0 0 chr15 16005361 16005659 -69690095 + AluY SINE Alu 1 298 -13 309 234 39 16 chr15 16005674 16005802 -69689952 - L1ME4a LINE L1 -2154 3992 3862 1655 180 0 14 chr15 16006099 16006394 -69689360 + AluJo SINE Alu 1 291 -21 301 274 171 14 chr15 16006910 16007056 -69688698 + MIR SINE MIR 11 179 -83 316 350 43 34 chr15 16007412 16007646 -69688108 - MIR SINE MIR -14 248 13 1144 267 59 53 chr15 16008417 16009166 -69686588 + L1ME3A LINE L1 5131 5883 -287 1883 125 0 32 chr15 16009495 16009776 -69685978 + AluSx SINE Alu 28 299 -13 21 0 0 0 chr15 16010908 16010929 -69684825 + AT_rich Low_complexity Low_complexity 1 21 0 976 200 0 0 chr15 16011450 16011625 -69684129 - FRAM SINE Alu -1 175 1 25 31 0 0 chr15 16012484 16012516 -69683238 + AT_rich Low_complexity Low_complexity 1 32 0 38 22 0 0 chr15 16012801 16012846 -69682908 + AT_rich Low_complexity Low_complexity 1 45 0 729 235 96 62 chr15 16012901 16013072 -69682682 - L1ME4a LINE L1 -119 6002 5838 2090 93 50 0 chr15 16013072 16013351 -69682403 - AluSc SINE Alu -16 293 1 729 235 96 62 chr15 16013351 16013584 -69682170 - L1ME4a LINE L1 -283 5838 5584 218 105 26 0 chr15 16016104 16016142 -69679612 + GA-rich Low_complexity Low_complexity 1 39 0 1495 99 5 19 chr15 16016540 16016751 -69679003 + AluSg/x SINE Alu 94 301 -9 244 288 182 35 chr15 16017390 16017588 -69678166 - L3b LINE CR1 -140 1443 1217 258 95 0 0 chr15 16018368 16018410 -69677344 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr15 16018543 16018564 -69677190 + AT_rich Low_complexity Low_complexity 1 21 0 648 251 123 17 chr15 16027561 16027796 -69667958 - MIR SINE MIR -2 260 1 1459 106 89 8 chr15 16028155 16028392 -69667362 - L1MA9 LINE L1 -2 6310 6055 228 122 0 0 chr15 16029133 16029174 -69666580 + (TG)n Simple_repeat Simple_repeat 1 41 0 739 204 126 0 chr15 16032372 16032539 -69663215 + MER5A DNA MER1_type 2 189 0 261 0 0 0 chr15 16033718 16033747 -69662007 + (GA)n Simple_repeat Simple_repeat 1 29 0 310 300 149 78 chr15 16033998 16034421 -69661333 - L1M2 LINE L1 -5954 895 443 252 0 0 0 chr15 16035746 16035774 -69659980 + (TG)n Simple_repeat Simple_repeat 2 29 0 2001 135 0 3 chr15 16037506 16037788 -69657966 - AluSx SINE Alu -29 283 3 321 164 18 0 chr15 16038090 16038145 -69657609 + MLT1L LTR MaLR 168 223 -392 321 314 112 12 chr15 16038310 16038479 -69657275 + MLT1L LTR MaLR 423 608 -7 352 293 92 12 chr15 16038518 16038682 -69657072 - L1ME LINE L1 -441 5680 5504 316 364 85 6 chr15 16039393 16039569 -69656185 - MIR3 SINE MIR -5 203 14 2148 136 3 0 chr15 16040198 16040507 -69655247 + AluSx SINE Alu 1 310 -2 210 118 0 0 chr15 16040524 16040558 -69655196 + (T)n Simple_repeat Simple_repeat 1 34 0 309 323 37 37 chr15 16040619 16040780 -69654974 + L3b LINE CR1 1362 1522 -61 322 264 10 32 chr15 16041489 16041790 -69653964 + CT-rich Low_complexity Low_complexity 1 294 0 181 191 21 0 chr15 16041790 16041837 -69653917 + MIR SINE MIR 167 214 -48 1594 241 123 18 chr15 16042098 16042601 -69653153 + MER69 DNA AcHobo 1 556 -670 362 230 75 58 chr15 16042659 16042744 -69653010 + MER69 DNA AcHobo 2350 2432 -94 2091 104 32 4 chr15 16042744 16043022 -69652732 - AluSg SINE Alu -22 288 3 362 230 75 58 chr15 16043022 16043110 -69652644 + MER69 DNA AcHobo 2432 2526 0 267 290 0 0 chr15 16044088 16044150 -69651604 - L2 LINE L2 -208 3064 3003 259 247 0 39 chr15 16044500 16044577 -69651177 + CT-rich Low_complexity Low_complexity 1 74 0 311 216 216 0 chr15 16046031 16046133 -69649621 + MIR3 SINE MIR 85 208 0 409 226 143 42 chr15 16046275 16046443 -69649311 - LTR67 LTR ERVL -8 549 365 432 236 187 8 chr15 16046633 16046756 -69648998 + LTR67 LTR ERVL 74 218 -339 3172 124 2 2 chr15 16046764 16047206 -69648548 + L1PA16 LINE L1 5716 6157 -9 2045 148 60 49 chr15 16047362 16047747 -69648007 + MLT1B LTR MaLR 1 389 -1 399 174 47 200 chr15 16048432 16048530 -69647224 - MER103 DNA DNA -2 164 106 2104 107 18 11 chr15 16048530 16048838 -69646916 + AluSx SINE Alu 1 310 0 399 174 47 200 chr15 16048838 16048928 -69646826 - MER103 DNA DNA -60 106 4 1656 119 97 0 chr15 16048958 16049227 -69646527 + L1MA1 LINE L1 6004 6298 -4 2297 54 21 4 chr15 16049307 16049608 -69646146 - AluY SINE Alu 0 306 1 379 316 92 5 chr15 16050633 16050829 -69644925 + L2 LINE L2 2431 2643 -671 1212 194 80 123 chr15 16050844 16051317 -69644437 + LTR45B LTR ERV1 27 479 -10 482 288 41 6 chr15 16051328 16051498 -69644256 + MIR SINE MIR 80 255 -7 2029 137 9 12 chr15 16052187 16052508 -69643246 - MER7A DNA MER2_type -25 321 4 3041 194 18 32 chr15 16053353 16053915 -69641839 - MLT2B3 LTR ERVL 0 554 1 695 275 45 15 chr15 16054528 16054728 -69641026 + MLT1I LTR MaLR 1 206 -203 1654 70 0 14 chr15 16054755 16054970 -69640784 - AluY SINE Alu 0 311 100 3313 159 51 12 chr15 16056782 16057387 -69638367 + L1MB8 LINE L1 5512 6140 -38 934 234 186 53 chr15 16057397 16057794 -69637960 + MLT1D LTR MaLR 12 582 -44 971 219 73 10 chr15 16058294 16058499 -69637255 + MER20 DNA MER1_type 1 218 -1 203 204 37 19 chr15 16058551 16058605 -69637149 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 471 209 37 107 chr15 16058612 16058799 -69636955 - MER5B DNA MER1_type -4 174 1 359 195 136 160 chr15 16059206 16059316 -69636438 - MER5A DNA MER1_type -6 183 77 2042 98 4 0 chr15 16059316 16059581 -69636173 - AluSp SINE Alu -47 266 1 359 195 136 160 chr15 16059581 16059639 -69636115 - MER5A DNA MER1_type -112 77 19 234 250 217 33 chr15 16060753 16060873 -69634881 - MER5A DNA MER1_type 0 189 48 529 200 200 35 chr15 16060919 16061119 -69634635 - MER102a DNA MER1_type -10 320 88 536 264 62 62 chr15 16061155 16061363 -69634391 - MIR SINE MIR -48 214 7 563 231 19 0 chr15 16061504 16061612 -69634142 + MER81 DNA DNA 1 110 -4 1666 129 61 0 chr15 16061687 16061966 -69633788 - L1MA5 LINE L1 -5 6295 6000 22 0 0 0 chr15 16063408 16063430 -69632324 + AT_rich Low_complexity Low_complexity 1 22 0 1574 254 60 62 chr15 16064071 16064705 -69631049 + L1M3b LINE L1 1224 1856 -5640 994 270 52 84 chr15 16065044 16065507 -69630247 + L1M3b LINE L1 2070 2517 -4979 * 5613 211 33 87 chr15 16065491 16065750 -69630004 + L1M3b LINE L1 2456 2728 -4837 1933 127 51 0 chr15 16065750 16066025 -69629729 + AluSg SINE Alu 1 289 -21 5613 211 33 87 chr15 16066025 16066667 -69629087 + L1M3b LINE L1 2728 3404 -4161 801 194 0 15 chr15 16066667 16066801 -69628953 - FLAM_A SINE Alu -1 132 1 5613 211 33 87 chr15 16066801 16069703 -69626051 + L1M3b LINE L1 3404 5823 -1742 244 229 195 42 chr15 16069804 16069922 -69625832 - MIR3 SINE MIR -72 136 1 322 180 33 0 chr15 16070001 16070062 -69625692 + MER69 DNA AcHobo 1 63 -2463 525 174 6 126 chr15 16070177 16070344 -69625410 + MER69 DNA AcHobo 2380 2526 0 33 67 0 22 chr15 16070375 16070426 -69625328 + AT_rich Low_complexity Low_complexity 1 51 -37 1928 140 31 0 chr15 16070426 16070550 -69625204 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr15 16070550 16070574 -69625180 + (TA)n Simple_repeat Simple_repeat 2 25 0 1928 140 31 0 chr15 16070574 16070735 -69625019 + AluSx SINE Alu 120 295 -17 33 67 0 22 chr15 16070735 16070773 -69624981 + AT_rich Low_complexity Low_complexity 51 88 0 768 280 93 32 chr15 16070796 16071235 -69624519 - HAL1 LINE L1 -44 2463 1998 531 239 51 67 chr15 16071221 16071476 -69624278 - HAL1 LINE L1 -407 2100 1850 * 986 156 25 0 chr15 16075127 16075287 -69620467 + MLT1B LTR MaLR 227 390 0 2868 234 23 13 chr15 16076023 16076711 -69619043 + L1ME1 LINE L1 5457 6151 -15 227 259 0 0 chr15 16077306 16077360 -69618394 + MIR SINE MIR 80 133 -129 300 111 0 0 chr15 16077835 16077880 -69617874 + (TG)n Simple_repeat Simple_repeat 1 45 0 456 221 277 20 chr15 16078168 16078363 -69617391 - MIR SINE MIR -14 248 4 404 333 0 26 chr15 16079710 16079866 -69615888 - MIR SINE MIR -76 186 35 1932 138 98 20 chr15 16081759 16082106 -69613648 - THE1C LTR MaLR 0 375 2 896 267 31 19 chr15 16085802 16086060 -69609694 + MIR SINE MIR 2 262 0 1641 111 0 25 chr15 16086790 16087033 -69608721 - AluSc SINE Alu -72 237 1 1941 141 7 10 chr15 16087068 16087373 -69608381 + AluJb SINE Alu 2 305 -7 303 291 71 16 chr15 16088393 16088520 -69607234 - L2 LINE L2 -2 3270 3137 303 287 47 31 chr15 16088836 16088965 -69606789 + MIR SINE MIR 74 204 -58 2206 105 10 0 chr15 16089709 16090003 -69605751 - AluSc SINE Alu -12 297 1 1773 266 53 2 chr15 16090586 16091134 -69604620 + L2 LINE L2 1431 2006 -1308 521 307 74 39 chr15 16091399 16091669 -69604085 - ERVL LTR ERVL -2832 2822 2541 2341 88 0 3 chr15 16091669 16091963 -69603791 + AluSc SINE Alu 1 293 -16 521 307 74 39 chr15 16091963 16092019 -69603735 - ERVL LTR ERVL -3113 2541 2488 979 331 54 56 chr15 16092131 16093082 -69602672 - ERVL LTR ERVL -3926 1838 890 443 268 62 115 chr15 16093853 16094436 -69601318 - LTR67 LTR ERVL -2 555 4 327 150 0 0 chr15 16095412 16095472 -69600282 + (TG)n Simple_repeat Simple_repeat 1 60 0 460 341 8 0 chr15 16096539 16096665 -69599089 + L2 LINE L2 3146 3272 0 198 284 54 14 chr15 16097091 16097165 -69598589 - MIR3 SINE MIR -47 161 85 2713 120 20 39 chr15 16097208 16097650 -69598104 - MER57B LTR ERV1 0 434 1 22 35 0 0 chr15 16098518 16098547 -69597207 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 16098923 16098945 -69596809 + AT_rich Low_complexity Low_complexity 1 22 0 1631 151 7 0 chr15 16101604 16101876 -69593878 + L1MA9 LINE L1 5341 5614 -677 5658 193 106 30 chr15 16101876 16103063 -69592691 + MER52C LTR ERV1 1 1278 0 1446 162 0 74 chr15 16103076 16103373 -69592381 + AluJo SINE Alu 23 297 -15 2759 164 30 77 chr15 16103374 16104034 -69591720 + L1MA9 LINE L1 5649 6277 -35 1738 24 0 0 chr15 16104624 16104832 -69590922 + L1PA2 LINE L1 5946 6153 -2 373 237 41 21 chr15 16105064 16105161 -69590593 + MER5B DNA MER1_type 80 178 0 219 271 0 0 chr15 16106541 16106589 -69589165 - L2 LINE L2 -8 3264 3217 566 238 20 0 chr15 16106768 16106919 -69588835 + MER103 DNA DNA 11 164 -2 534 219 138 0 chr15 16108144 16108267 -69587487 + MIR SINE MIR 79 218 -44 183 359 0 0 chr15 16108694 16108758 -69586996 + MIR SINE MIR 38 101 -107 * 198 214 0 71 chr15 16108748 16108804 -69586950 + L3 LINE CR1 1506 1557 -20 6358 124 53 16 chr15 16109356 16109545 -69586209 - Tigger3b DNA MER2_type -1886 1142 961 1849 181 0 10 chr15 16109545 16109859 -69585895 + AluJb SINE Alu 1 311 -1 6358 124 53 16 chr15 16109859 16110195 -69585559 - Tigger3b DNA MER2_type -2067 961 639 2179 125 22 33 chr15 16110195 16110563 -69585191 + THE1B LTR MaLR 1 364 0 6358 124 53 16 chr15 16110563 16111134 -69584620 - Tigger3b DNA MER2_type -2389 639 5 219 69 0 0 chr15 16112147 16112176 -69583578 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 240 312 36 5 chr15 16112220 16112317 -69583437 + MIR SINE MIR 46 142 -66 608 269 66 6 chr15 16113135 16113317 -69582437 + MIR SINE MIR 19 211 -51 22 0 0 0 chr15 16114222 16114244 -69581510 + AT_rich Low_complexity Low_complexity 1 22 0 223 270 80 30 chr15 16114320 16114420 -69581334 - L2 LINE L2 0 3313 3209 21 36 0 0 chr15 16114425 16114453 -69581301 + AT_rich Low_complexity Low_complexity 1 28 0 2831 154 41 19 chr15 16114598 16115084 -69580670 + L1MB7 LINE L1 5609 6110 -74 2476 61 0 0 chr15 16115084 16115379 -69580375 + AluY SINE Alu 1 295 -16 2831 154 41 19 chr15 16115379 16115456 -69580298 + L1MB7 LINE L1 6110 6184 0 24 0 0 0 chr15 16115546 16115570 -69580184 + AT_rich Low_complexity Low_complexity 1 24 0 1959 134 3 11 chr15 16116601 16116885 -69578869 + AluSx SINE Alu 1 282 -30 219 36 0 0 chr15 16116890 16116918 -69578836 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 16118051 16118078 -69577676 + AT_rich Low_complexity Low_complexity 1 27 0 305 141 62 47 chr15 16122031 16122095 -69573659 - L2 LINE L2 -69 3244 3180 378 288 44 28 chr15 16122211 16122529 -69573225 - L2 LINE L2 -1756 1558 1153 500 322 141 47 chr15 16123239 16123895 -69571859 - L2 LINE L2 -5 3267 2541 209 255 0 0 chr15 16123970 16124017 -69571737 + L2 LINE L2 3267 3313 0 224 233 0 33 chr15 16124429 16124489 -69571265 + MIR3 SINE MIR 15 72 -136 2038 232 29 50 chr15 16124952 16125646 -69570108 + L1ME4a LINE L1 4118 4796 -1350 28 0 0 0 chr15 16125673 16125701 -69570053 + AT_rich Low_complexity Low_complexity 1 28 0 186 282 167 13 chr15 16125788 16125866 -69569888 + L2 LINE L2 3182 3271 -1 22 0 0 0 chr15 16125984 16126006 -69569748 + AT_rich Low_complexity Low_complexity 1 22 0 742 203 139 25 chr15 16126174 16126376 -69569378 - MIR SINE MIR -3 259 35 2352 95 3 19 chr15 16128539 16128855 -69566899 - AluSq SINE Alu -2 311 1 265 399 68 7 chr15 16129010 16129158 -69566596 + L2 LINE L2 3116 3272 0 2327 130 3 14 chr15 16129618 16129988 -69565766 - MER47A DNA MER2_type 0 366 1 2636 231 31 9 chr15 16130427 16130998 -69564756 - MER21B LTR ERV1 -261 602 19 513 185 0 22 chr15 16131020 16131112 -69564642 - MER21B LTR ERV1 -773 90 1 342 345 144 14 chr15 16131446 16131756 -69563998 - L2 LINE L2 -292 2980 2629 262 367 41 0 chr15 16132807 16132905 -69562849 - MER91A DNA MER1_type -66 130 29 180 0 0 0 chr15 16133276 16133296 -69562458 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 259 85 43 0 chr15 16134147 16134194 -69561560 + GA-rich Low_complexity Low_complexity 3 51 0 286 230 40 70 chr15 16135196 16135296 -69560458 + MIR SINE MIR 92 188 -74 828 151 0 23 chr15 16135313 16135485 -69560269 + L1MA7 LINE L1 6124 6291 0 2088 113 40 0 chr15 16135920 16136221 -69559533 + AluSq SINE Alu 1 313 0 485 280 129 22 chr15 16137663 16138027 -69557727 + L1ME4a LINE L1 5265 5667 -454 263 146 36 0 chr15 16138124 16138179 -69557575 + L1ME4a LINE L1 5860 5916 -205 201 98 39 39 chr15 16138204 16138255 -69557499 + GA-rich Low_complexity Low_complexity 4 54 0 525 16 0 0 chr15 16138267 16138329 -69557425 + (TG)n Simple_repeat Simple_repeat 2 63 0 189 0 0 0 chr15 16138650 16138671 -69557083 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1060 182 98 42 chr15 16139460 16139767 -69555987 + MER33 DNA MER1_type 1 324 0 365 272 130 54 chr15 16140421 16140605 -69555149 - MLT1J LTR MaLR -202 309 112 276 355 40 7 chr15 16141543 16141695 -69554059 + L2 LINE L2 2894 3050 -222 1883 164 0 0 chr15 16142275 16142561 -69553193 + AluJo SINE Alu 5 290 -22 938 305 79 58 chr15 16143018 16143929 -69551825 - L1MEd LINE L1 -5187 932 3 38 61 0 0 chr15 16144107 16144173 -69551581 + AT_rich Low_complexity Low_complexity 1 66 0 2277 104 3 0 chr15 16144384 16144683 -69551071 - AluSp SINE Alu -13 300 1 1120 63 6 19 chr15 16145004 16145162 -69550592 + L1PA8 LINE L1 6017 6172 0 191 326 130 0 chr15 16145996 16146088 -69549666 + MIR3 SINE MIR 98 201 -7 2303 110 0 0 chr15 16147116 16147415 -69548339 + AluSx SINE Alu 4 302 -10 234 283 22 43 chr15 16147580 16147718 -69548036 - L1ME LINE L1 -458 5663 5529 245 250 50 10 chr15 16147978 16148078 -69547676 - L1ME4a LINE L1 -1 6120 6017 314 268 68 63 chr15 16148170 16148375 -69547379 - L1MC4a LINE L1 -1842 5966 5761 1298 141 163 103 chr15 16149829 16150149 -69545605 - Charlie3 DNA MER1_type 0 2712 1 329 313 11 0 chr15 16150154 16150237 -69545517 - MIR SINE MIR -104 104 23 367 165 0 6 chr15 16150401 16150660 -69545094 + AluJo SINE Alu 1 302 0 798 276 20 0 chr15 16150905 16151101 -69544653 + MIR SINE MIR 53 252 -10 1844 176 31 14 chr15 16151311 16151670 -69544084 - MLT1A1 LTR MaLR 0 365 1 2227 102 3 16 chr15 16151874 16152187 -69543567 - AluSx SINE Alu -3 309 1 23 54 0 0 chr15 16153268 16153305 -69542449 + AT_rich Low_complexity Low_complexity 1 37 0 786 144 0 0 chr15 16153485 16153603 -69542151 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr15 16153603 16153631 -69542123 + AT_rich Low_complexity Low_complexity 1 28 0 397 230 103 32 chr15 16154017 16154143 -69541611 + MIR3 SINE MIR 15 149 -59 412 276 9 20 chr15 16154193 16154329 -69541425 + MIR SINE MIR 21 157 -67 245 333 0 10 chr15 16154780 16154879 -69540875 - MER5A DNA MER1_type 0 189 92 1799 160 13 26 chr15 16154887 16155194 -69540560 + AluJb SINE Alu 1 303 -9 182 322 58 23 chr15 16155245 16155332 -69540422 + L2 LINE L2 2602 2691 -623 257 346 39 31 chr15 16155829 16155853 -69539901 + L3 LINE CR1 1434 1456 -121 2822 101 24 14 chr15 16155853 16156277 -69539477 + MSTA LTR MaLR 1 428 0 257 346 39 31 chr15 16156277 16156379 -69539375 + L3 LINE CR1 1456 1561 -16 21 36 0 0 chr15 16156462 16156490 -69539264 + AT_rich Low_complexity Low_complexity 1 28 0 1744 190 54 63 chr15 16156541 16157014 -69538740 + L1ME4a LINE L1 5122 5599 -565 2445 74 3 0 chr15 16157014 16157311 -69538443 - AluSc SINE Alu -6 303 6 1744 190 54 63 chr15 16157311 16157494 -69538260 + L1ME4a LINE L1 5599 5782 -382 341 261 90 30 chr15 16157531 16157665 -69538089 + LTR33 LTR ERVL 106 247 -274 235 301 98 15 chr15 16158274 16158407 -69537347 + LTR33 LTR ERVL 371 514 -7 221 102 41 0 chr15 16158407 16158456 -69537298 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 227 208 78 0 chr15 16158469 16158546 -69537208 + L1MC4 LINE L1 6620 6702 -1340 * 287 179 140 112 chr15 16158518 16158697 -69537057 + L1ME4a LINE L1 5935 6118 -3 1796 132 14 34 chr15 16158699 16158994 -69536760 - AluJb SINE Alu -14 298 10 264 289 92 13 chr15 16159088 16159164 -69536590 + MIR SINE MIR 50 131 -77 643 269 26 118 chr15 16161844 16162167 -69533587 - MER102b DNA MER1_type -1109 319 29 3223 144 31 8 chr15 16162167 16162682 -69533072 + MER1A DNA MER1_type 1 527 0 643 269 26 118 chr15 16162682 16162707 -69533047 - MER102b DNA MER1_type -1399 29 3 1538 165 7 15 chr15 16162881 16163154 -69532600 + AluJo SINE Alu 27 297 -15 449 261 81 31 chr15 16163275 16163436 -69532318 - MIR SINE MIR -41 221 53 2351 79 0 3 chr15 16163445 16163735 -69532019 - AluY SINE Alu -22 289 1 2428 67 3 3 chr15 16164462 16164759 -69530995 - AluY SINE Alu -14 297 1 2240 99 3 0 chr15 16165158 16165450 -69530304 + AluSc SINE Alu 1 293 -16 2219 113 0 23 chr15 16165993 16166295 -69529459 - AluSx SINE Alu -14 298 4 314 61 20 0 chr15 16167044 16167093 -69528661 + (CA)n Simple_repeat Simple_repeat 1 50 0 303 300 176 43 chr15 16167453 16167663 -69528091 - L2 LINE L2 -3 3269 3032 275 323 153 46 chr15 16167636 16167918 -69527836 - L2 LINE L2 -545 2769 2458 * 6015 181 42 19 chr15 16167931 16169496 -69526258 + L1PA15 LINE L1 4079 5708 -457 1704 213 0 7 chr15 16169496 16169797 -69525957 + AluJb SINE Alu 1 299 -13 6015 181 42 19 chr15 16169797 16170252 -69525502 + L1PA15 LINE L1 5708 6151 -14 442 311 39 64 chr15 16170353 16170636 -69525118 - L2 LINE L2 -889 2425 2150 400 258 24 8 chr15 16171129 16171253 -69524501 + LTR67 LTR ERVL 430 555 -2 1906 129 0 50 chr15 16172117 16172459 -69523295 - MER1B DNA MER1_type 0 339 15 2310 109 3 0 chr15 16172499 16172803 -69522951 + AluSq SINE Alu 1 305 -8 1916 125 39 0 chr15 16173319 16173599 -69522155 - AluSx SINE Alu -21 291 1 227 322 33 25 chr15 16174004 16174125 -69521629 + MLT1J LTR MaLR 232 353 -158 235 224 194 20 chr15 16174128 16174226 -69521528 + MLT1L LTR MaLR 500 614 -1 237 261 106 48 chr15 16174229 16174436 -69521318 + HAL1 LINE L1 1241 1459 -1048 5012 129 32 11 chr15 16175440 16176351 -69519403 - Tigger3b DNA MER2_type 0 1231 302 679 132 57 0 chr15 16176355 16176461 -69519293 - Tigger3b DNA MER2_type -1118 113 2 357 271 40 33 chr15 16176689 16176840 -69518914 + Charlie8 DNA MER1_type 38 189 -2228 740 244 50 9 chr15 16176961 16177182 -69518572 - LTR16A1 LTR ERVL -15 442 213 307 191 103 56 chr15 16177210 16177336 -69518418 - LTR16A1 LTR ERVL -325 132 1 341 298 33 0 chr15 16177339 16177460 -69518294 + Charlie8 DNA MER1_type 368 492 -1925 2010 82 0 7 chr15 16177941 16178220 -69517534 - L1PA13 LINE L1 -7 6156 5880 23 33 0 0 chr15 16178296 16178326 -69517428 + AT_rich Low_complexity Low_complexity 1 30 0 280 283 90 6 chr15 16179640 16179806 -69515948 - MER112 DNA MER1_type 0 260 81 21 0 0 0 chr15 16180393 16180414 -69515340 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 16180911 16180940 -69514814 + AT_rich Low_complexity Low_complexity 1 29 0 246 155 0 69 chr15 16183475 16183533 -69512221 - MER83 LTR ERV1 -2 446 393 2072 196 144 20 chr15 16183769 16184381 -69511373 + L1MC4 LINE L1 7132 7819 -223 411 217 65 0 chr15 16184398 16184504 -69511250 + L1MC4 LINE L1 7880 7985 -10 228 100 0 0 chr15 16184996 16185036 -69510718 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr15 16185046 16185080 -69510674 + (CA)n Simple_repeat Simple_repeat 1 34 0 3085 168 39 19 chr15 16185525 16186074 -69509680 - MER6A DNA MER2_type -261 604 41 1632 169 29 16 chr15 16186074 16186382 -69509372 + AluJo SINE Alu 1 312 0 3085 168 39 19 chr15 16186382 16186420 -69509334 - MER6A DNA MER2_type -824 41 5 515 153 10 0 chr15 16187268 16187366 -69508388 + CT-rich Low_complexity Low_complexity 3 101 0 290 330 16 16 chr15 16187699 16187887 -69507867 - HAL1b LINE L1 -625 723 536 244 187 80 133 chr15 16188723 16188873 -69506881 - MER20B DNA MER1_type -609 174 33 9908 184 33 23 chr15 16188928 16191686 -69504068 + L1MA9 LINE L1 2981 5774 -538 333 0 0 0 chr15 16191686 16191723 -69504031 + (CA)n Simple_repeat Simple_repeat 2 38 0 9908 184 33 23 chr15 16191723 16192230 -69503524 + L1MA9 LINE L1 5774 6274 -38 996 215 61 0 chr15 16192368 16192615 -69503139 - L1P LINE L1 -987 5159 4898 * 2980 170 66 5 chr15 16192598 16193204 -69502550 + L1MC3 LINE L1 7133 7775 -10 432 288 99 75 chr15 16193222 16193635 -69502119 + L1ME4a LINE L1 3259 3681 -2465 479 342 60 7 chr15 16193705 16193974 -69501780 + L1ME4a LINE L1 3693 3975 -2171 24 32 0 0 chr15 16194048 16194079 -69501675 + AT_rich Low_complexity Low_complexity 1 31 0 1668 188 62 3 chr15 16194369 16194709 -69501045 + MLT1F1 LTR MaLR 208 567 0 183 343 66 80 chr15 16194867 16195319 -69500435 - L2 LINE L2 -1133 2181 1736 1133 211 153 0 chr15 16196642 16196903 -69498851 - AluJo SINE Alu -1 301 1 27 49 0 0 chr15 16197475 16197516 -69498238 + AT_rich Low_complexity Low_complexity 1 41 0 447 300 64 19 chr15 16199051 16199318 -69496436 + L1ME4a LINE L1 4735 5013 -1133 1298 193 212 37 chr15 16199850 16200255 -69495499 - MLT1D LTR MaLR -8 497 22 467 234 7 43 chr15 16200311 16200452 -69495302 + L1ME4a LINE L1 5691 5826 -295 296 197 30 15 chr15 16200461 16200527 -69495227 - MLT1G LTR MaLR 0 590 524 3222 195 33 8 chr15 16200528 16201199 -69494555 + L1MC4a LINE L1 7121 7808 0 5296 154 25 10 chr15 16201203 16202129 -69493625 + L1MA7 LINE L1 5352 6291 0 605 196 24 54 chr15 16202135 16202303 -69493451 - MLT1G LTR MaLR -39 551 389 1191 185 195 53 chr15 16202405 16202799 -69492955 - MLT1C LTR MaLR 0 467 18 694 273 40 43 chr15 16202848 16203101 -69492653 - MLT1G LTR MaLR -299 291 40 260 262 65 74 chr15 16203167 16203396 -69492358 + L1ME4a LINE L1 5839 6065 -56 1971 133 16 16 chr15 16205502 16205811 -69489943 - AluJo SINE Alu -3 309 1 294 292 115 8 chr15 16206120 16206250 -69489504 - MIR SINE MIR 0 262 119 729 221 64 60 chr15 16206651 16206900 -69488854 - MIR SINE MIR 0 262 13 1646 166 7 42 chr15 16207101 16207408 -69488346 - AluJo SINE Alu -8 304 9 4077 175 28 45 chr15 16207692 16208491 -69487263 + LTR1 LTR ERV1 1 785 0 6281 180 76 35 chr15 16208572 16209265 -69486489 - Charlie1a DNA MER1_type -1309 1452 789 2792 13 0 0 chr15 16209265 16209567 -69486187 + AluY SINE Alu 1 302 -9 6281 180 76 35 chr15 16209567 16210266 -69485488 - Charlie1a DNA MER1_type -1972 789 2 436 187 0 0 chr15 16211210 16211285 -69484469 + MER33 DNA MER1_type 8 82 -242 194 231 256 34 chr15 16211845 16211962 -69483792 - MIR SINE MIR 0 262 120 2035 119 3 7 chr15 16212576 16212862 -69482892 - AluJb SINE Alu -27 285 1 2291 95 0 0 chr15 16212864 16213158 -69482596 - AluSx SINE Alu -18 294 1 270 95 0 24 chr15 16213903 16213945 -69481809 + FLAM SINE Alu 86 126 -7 1266 253 47 49 chr15 16213949 16214468 -69481286 + L1ME1 LINE L1 4498 5016 -1150 1962 138 28 0 chr15 16214468 16214757 -69480997 + AluSx SINE Alu 1 297 -15 1266 253 47 49 chr15 16214757 16214897 -69480857 + L1ME1 LINE L1 5016 6148 -18 1239 160 0 5 chr15 16215304 16215498 -69480256 - AluJo SINE Alu -33 279 87 1546 134 150 13 chr15 16215815 16216171 -69479583 + MSTA LTR MaLR 1 428 0 491 112 0 37 chr15 16216388 16216495 -69479259 + (GGGA)n Simple_repeat Simple_repeat 2 104 0 1903 93 0 30 chr15 16217200 16217470 -69478284 - AluSx SINE Alu -15 297 36 235 256 298 18 chr15 16217625 16217793 -69477961 - L3 LINE CR1 -226 1351 1137 22 0 0 0 chr15 16218688 16218710 -69477044 + AT_rich Low_complexity Low_complexity 1 22 0 298 208 96 24 chr15 16218847 16218972 -69476782 + HAL1 LINE L1 2060 2193 -314 22 70 0 0 chr15 16219090 16219133 -69476621 + AT_rich Low_complexity Low_complexity 1 43 0 450 283 59 87 chr15 16219167 16219524 -69476230 + L1ME4a LINE L1 5032 5378 -768 234 292 42 42 chr15 16219561 16219681 -69476073 + L1ME4a LINE L1 5956 6075 -46 231 201 76 83 chr15 16219698 16219842 -69475912 - L1ME4a LINE L1 -12 6109 5967 2357 54 17 7 chr15 16220513 16220808 -69474946 + AluY SINE Alu 1 298 -13 246 175 18 0 chr15 16220951 16221008 -69474746 + L1ME1 LINE L1 4981 5038 -1108 957 108 8 0 chr15 16221030 16221159 -69474595 - AluSq/x SINE Alu -183 130 1 3505 201 80 20 chr15 16221159 16222250 -69473504 + L1ME1 LINE L1 5023 6158 -8 452 269 154 50 chr15 16222312 16222591 -69473163 - L1ME4a LINE L1 -2177 5631 5324 390 284 125 11 chr15 16223270 16223446 -69472308 + MIR SINE MIR 16 211 -51 1284 237 103 13 chr15 16223814 16224278 -69471476 + L2 LINE L2 2201 2896 -417 2843 195 70 8 chr15 16224447 16225057 -69470697 - MER99 DNA DNA -179 649 2 313 263 88 44 chr15 16225096 16225256 -69470498 + L2 LINE L2 2957 3123 -190 295 270 45 11 chr15 16225285 16225374 -69470380 + MIR3 SINE MIR 67 158 -50 239 293 0 61 chr15 16225384 16225466 -69470288 + MER5B DNA MER1_type 15 91 -87 335 306 160 0 chr15 16225472 16225616 -69470138 - MER5A DNA MER1_type -6 183 17 394 282 99 11 chr15 16226716 16226897 -69468857 - MIR SINE MIR -44 218 22 1323 154 4 39 chr15 16227409 16227643 -69468111 - AluJb SINE Alu 0 312 87 380 319 98 12 chr15 16227762 16227925 -69467829 - MER5A DNA MER1_type -4 185 9 213 39 0 0 chr15 16228346 16228372 -69467382 + (CA)n Simple_repeat Simple_repeat 1 26 0 1054 132 70 9 chr15 16229007 16229212 -69466542 - LTR47A LTR ERVL -8 444 234 427 289 53 7 chr15 16229932 16230084 -69465670 + MIR3 SINE MIR 49 207 -1 219 181 111 83 chr15 16230365 16230437 -69465317 + MIR3 SINE MIR 95 168 -40 2552 45 3 3 chr15 16230824 16231133 -69464621 + AluY SINE Alu 1 309 -2 2767 13 0 3 chr15 16231509 16231815 -69463939 + AluY SINE Alu 1 305 -6 1924 90 34 0 chr15 16231828 16232094 -69463660 + L1PA12 LINE L1 5894 6168 0 233 259 35 0 chr15 16232133 16232191 -69463563 + MIR SINE MIR 91 150 -58 618 116 5 3 chr15 16232539 16232759 -69462995 + AluJo SINE Alu 1 277 -35 687 207 21 52 chr15 16232791 16232984 -69462770 - HAL1 LINE L1 -1501 1006 820 257 297 30 11 chr15 16233355 16233459 -69462295 + MIR SINE MIR 60 162 -56 302 258 38 82 chr15 16234234 16234393 -69461361 - HAL1 LINE L1 -112 2395 2244 201 147 0 0 chr15 16234793 16234827 -69460927 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 649 179 30 167 chr15 16234840 16235074 -69460680 - HAL1 LINE L1 -2302 205 4 320 291 118 9 chr15 16235280 16235477 -69460277 - MLT1K LTR MaLR -10 605 366 888 154 26 26 chr15 16236350 16236506 -69459248 - MER20 DNA MER1_type 0 219 64 188 197 16 98 chr15 16237460 16237521 -69458233 + L2 LINE L2 1238 1293 -2021 239 250 125 0 chr15 16238313 16238393 -69457361 - MIR SINE MIR -8 254 165 484 302 65 31 chr15 16238399 16238690 -69457064 - LTR16C LTR ERVL -9 482 182 649 257 13 13 chr15 16238802 16238954 -69456800 - MIR SINE MIR -103 159 8 2411 99 0 3 chr15 16243541 16243854 -69451900 - AluSx SINE Alu 0 312 1 232 294 35 12 chr15 16243860 16243945 -69451809 - L2 LINE L2 -12 3301 3215 250 309 53 49 chr15 16244881 16245146 -69450608 + L1PB2 LINE L1 5663 5928 -223 * 2153 184 30 26 chr15 16244916 16245382 -69450372 + L1MB7 LINE L1 5698 6165 -19 453 305 84 50 chr15 16245608 16245906 -69449848 + MER102b DNA MER1_type 1 308 -33 437 263 17 8 chr15 16246112 16246230 -69449524 - MIR SINE MIR -134 128 10 29 0 0 0 chr15 16247550 16247579 -69448175 + AT_rich Low_complexity Low_complexity 1 29 0 239 204 0 0 chr15 16247857 16247901 -69447853 + L2 LINE L2 1879 1922 -1392 1406 156 82 27 chr15 16247903 16248208 -69447546 - MER33 DNA MER1_type -10 314 1 443 295 113 17 chr15 16248210 16248512 -69447242 + L2 LINE L2 1959 2289 -1025 1139 294 123 20 chr15 16248535 16249014 -69446740 + L2 LINE L2 2780 3313 0 198 103 0 0 chr15 16249653 16249682 -69446072 + (TG)n Simple_repeat Simple_repeat 2 30 0 1062 56 6 81 chr15 16250093 16250138 -69445616 + L1PA12 LINE L1 6021 6068 -100 2417 58 17 0 chr15 16250138 16250431 -69445323 + AluY SINE Alu 1 298 -13 1062 56 6 81 chr15 16250431 16250545 -69445209 + L1PA12 LINE L1 6068 6168 0 764 156 4 132 chr15 16251331 16251477 -69444277 - L1MEc LINE L1 -4011 2710 2609 710 230 0 0 chr15 16251477 16251603 -69444151 - FLAM_A SINE Alu -7 126 1 764 156 4 132 chr15 16251603 16251713 -69444041 - L1MEc LINE L1 -4112 2609 2487 1390 134 4 42 chr15 16251725 16251914 -69443840 - MER46A DNA MER2_type -2496 235 55 2510 61 0 0 chr15 16251914 16252208 -69443546 + AluY SINE Alu 5 298 -13 1390 134 4 42 chr15 16252208 16252257 -69443497 - MER46A DNA MER2_type -2676 55 6 577 202 60 6 chr15 16252266 16252434 -69443320 - L1MEc LINE L1 -4252 2469 2293 2027 149 34 45 chr15 16252434 16252988 -69442766 + MLT2A2 LTR ERVL 1 554 0 1884 144 31 7 chr15 16253017 16253308 -69442446 - AluJb SINE Alu -12 300 3 291 145 32 0 chr15 16253319 16253381 -69442373 - L1MEc LINE L1 -3935 2605 2542 1350 282 29 15 chr15 16253381 16253906 -69441848 - L1MEc LINE L1 -4462 2259 1728 441 263 61 57 chr15 16253985 16254247 -69441507 - L1ME LINE L1 -297 5824 5562 431 266 33 37 chr15 16254403 16254647 -69441107 - L1MEc LINE L1 -4893 1637 1395 302 311 48 70 chr15 16254667 16254940 -69440814 - L1MEc LINE L1 -5191 1339 1073 788 300 22 45 chr15 16255097 16255364 -69440390 + MIR SINE MIR 2 262 0 3648 151 49 7 chr15 16255973 16256687 -69439067 + L1MA8 LINE L1 5543 6286 -5 1973 148 0 43 chr15 16257048 16257373 -69438381 + AluJo SINE Alu 1 311 -1 183 186 0 0 chr15 16257972 16258015 -69437739 + GA-rich Low_complexity Low_complexity 2 44 0 2158 200 91 2 chr15 16262131 16262591 -69433163 + MLT1F LTR MaLR 10 510 -32 292 314 99 0 chr15 16262618 16262739 -69433015 + MIR SINE MIR 119 251 -11 1195 288 135 35 chr15 16263324 16264018 -69431736 + L2 LINE L2 2020 2783 -531 261 155 69 17 chr15 16264072 16264130 -69431624 - MER91 DNA MER1_type -93 97 37 2483 152 31 7 chr15 16264215 16264629 -69431125 + MSTB LTR MaLR 1 424 -2 446 331 166 10 chr15 16264656 16264970 -69430784 + L2 LINE L2 2946 3308 -5 279 238 74 41 chr15 16265172 16265212 -69430542 - HAL1b LINE L1 0 6048 6011 1807 171 17 7 chr15 16265212 16265505 -69430249 + AluJo SINE Alu 1 296 -16 279 238 74 41 chr15 16265505 16265639 -69430115 - HAL1b LINE L1 -37 6011 1191 34 24 0 0 chr15 16265773 16265814 -69429940 + AT_rich Low_complexity Low_complexity 1 41 0 253 326 0 0 chr15 16265840 16265932 -69429822 - L1MC/D LINE L1 -2009 5799 5708 234 234 47 47 chr15 16265987 16266094 -69429660 - L1MC/D LINE L1 -2256 5552 5446 441 308 124 52 chr15 16267164 16267259 -69428495 + L1ME3 LINE L1 5447 5534 -628 3843 154 79 6 chr15 16267259 16267928 -69427826 - MER72 LTR ERV1 0 722 5 441 308 124 52 chr15 16267928 16267983 -69427771 + L1ME3 LINE L1 5534 5584 -578 454 108 81 0 chr15 16267983 16268057 -69427697 + MADE1 DNA Mariner 1 80 0 441 308 124 52 chr15 16268057 16268291 -69427463 + L1ME3 LINE L1 5584 5860 -302 652 291 44 0 chr15 16269280 16269462 -69426292 - MIR SINE MIR -71 191 2 39 0 0 0 chr15 16270250 16270289 -69425465 + AT_rich Low_complexity Low_complexity 1 39 0 288 326 145 55 chr15 16270516 16270915 -69424839 - L2 LINE L2 -1 3271 2837 805 319 71 48 chr15 16271499 16272242 -69423512 + L2 LINE L2 2062 2821 -493 315 122 0 0 chr15 16272268 16272317 -69423437 + (CA)n Simple_repeat Simple_repeat 1 49 0 2016 112 0 0 chr15 16272338 16272641 -69423113 + L1MB8 LINE L1 5324 5626 -552 1600 202 46 78 chr15 16272641 16272842 -69422912 - MLT1D LTR MaLR 0 505 299 1186 151 122 0 chr15 16272842 16272944 -69422810 + MER30 DNA MER1_type 1 89 -141 333 0 0 0 chr15 16272944 16272981 -69422773 + (CA)n Simple_repeat Simple_repeat 2 38 0 1186 151 122 0 chr15 16272981 16273083 -69422671 + MER30 DNA MER1_type 89 230 0 1600 202 46 78 chr15 16273083 16273381 -69422373 - MLT1D LTR MaLR -206 299 22 2583 176 18 20 chr15 16273423 16273974 -69421780 + L1MB8 LINE L1 5624 6173 -5 275 388 93 0 chr15 16274595 16274778 -69420976 + L3b LINE CR1 1260 1459 -124 3390 99 40 18 chr15 16274803 16275312 -69420442 + L1MA3 LINE L1 5725 6250 -55 2322 91 3 7 chr15 16275312 16275610 -69420144 - AluSp SINE Alu -16 297 1 3390 99 40 18 chr15 16275610 16275668 -69420086 + L1MA3 LINE L1 6250 6305 0 561 260 126 59 chr15 16275714 16276102 -69419652 - MLT1J LTR MaLR -38 473 60 1977 144 3 3 chr15 16276103 16276401 -69419353 + AluSx SINE Alu 1 298 -14 2168 158 89 3 chr15 16276498 16276890 -69418864 + MSTB LTR MaLR 1 426 0 224 179 26 0 chr15 16277110 16277149 -69418605 + L2 LINE L2 3220 3259 -13 221 266 76 51 chr15 16277457 16277615 -69418139 + L2 LINE L2 2690 2851 -463 252 330 17 25 chr15 16277706 16277824 -69417930 + L2 LINE L2 2948 3064 -208 207 194 0 0 chr15 16277892 16277928 -69417826 + (TAG)n Simple_repeat Simple_repeat 2 37 0 365 226 129 0 chr15 16277928 16278021 -69417733 - MIR SINE MIR 0 262 158 303 411 24 0 chr15 16278037 16278161 -69417593 + L2 LINE L2 3134 3260 -12 688 152 14 51 chr15 16278163 16278301 -69417453 + FLAM_C SINE Alu 1 133 0 3875 52 0 0 chr15 16278811 16279316 -69416438 + L1PA5 LINE L1 3827 4331 -1815 7003 66 0 3 chr15 16279318 16280935 -69414819 + L1PA5 LINE L1 4532 6153 -1 298 323 125 8 chr15 16281193 16281339 -69414415 - MIR SINE MIR -76 132 4 199 328 15 0 chr15 16281522 16281589 -69414165 - MIR SINE MIR 0 262 195 1797 144 89 70 chr15 16281591 16281611 -69414143 + MLT1C LTR MaLR 1 19 -448 180 0 0 0 chr15 16281611 16281631 -69414123 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1797 144 89 70 chr15 16281631 16282068 -69413686 + MLT1C LTR MaLR 19 467 0 362 78 0 94 chr15 16282320 16282384 -69413370 + MLT1A1 LTR MaLR 1 58 -307 2071 130 87 10 chr15 16282387 16282778 -69412976 - MSTA LTR MaLR -2 426 6 1762 141 6 52 chr15 16282783 16283109 -69412645 + MLT1A1 LTR MaLR 55 365 0 488 260 93 7 chr15 16284476 16284626 -69411128 + MER5A DNA MER1_type 1 163 -26 509 257 9 0 chr15 16285142 16285255 -69410499 + MER81 DNA DNA 1 114 0 612 220 29 29 chr15 16285770 16285943 -69409811 - MER5B DNA MER1_type -1 177 5 304 233 271 8 chr15 16285951 16286084 -69409670 - L2 LINE L2 -254 3059 2892 318 235 174 0 chr15 16286086 16286184 -69409570 + L2 LINE L2 3196 3310 -3 458 314 112 5 chr15 16286192 16286380 -69409374 - L2 LINE L2 -420 2894 2687 596 169 25 8 chr15 16286380 16286498 -69409256 + L1MDa LINE L1 18 137 -6403 720 171 41 41 chr15 16286498 16286668 -69409086 + LTR8 LTR ERV1 1 170 -521 408 285 209 6 chr15 16286668 16286826 -69408928 + L1MDa LINE L1 813 1002 -5538 5260 223 82 18 chr15 16286835 16287755 -69407999 + L1MDa LINE L1 1703 2562 -3978 2259 115 10 0 chr15 16287755 16288060 -69407694 + AluSx SINE Alu 1 308 -4 5260 223 82 18 chr15 16288060 16288092 -69407662 + L1MDa LINE L1 2562 2591 -3949 2317 122 97 8 chr15 16288092 16288485 -69407269 - MSTA LTR MaLR 0 428 1 5260 223 82 18 chr15 16288485 16290080 -69405674 + L1MDa LINE L1 2591 4434 -2106 2995 162 65 17 chr15 16290080 16290654 -69405100 - MER7C DNA MER2_type 0 602 2 5260 223 82 18 chr15 16290654 16290754 -69405000 + L1MDa LINE L1 4434 4526 -2014 1908 124 20 32 chr15 16290758 16291104 -69404650 + L1MD1 LINE L1 5901 6242 0 597 328 40 66 chr15 16291104 16291452 -69404302 - L2 LINE L2 -612 2702 2364 357 248 9 9 chr15 16292533 16292646 -69403108 - MER117 DNA MER1_type -28 169 57 380 305 29 9 chr15 16293053 16293158 -69402596 + L2 LINE L2 3195 3301 -12 4159 136 28 11 chr15 16293160 16293865 -69401889 + L1MB2 LINE L1 5448 6164 -7 1212 164 9 18 chr15 16293919 16294139 -69401615 + MER20 DNA MER1_type 2 219 0 201 121 0 0 chr15 16294210 16294243 -69401511 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1774 144 10 55 chr15 16295047 16295359 -69400395 + AluJo SINE Alu 1 298 -14 356 262 78 14 chr15 16295948 16296089 -69399665 + LTR67 LTR ERVL 400 549 -8 724 260 41 12 chr15 16296149 16296391 -69399363 - MIR SINE MIR 0 262 14 184 280 197 8 chr15 16296502 16296634 -69399120 + L2 LINE L2 3051 3207 -106 1525 199 161 17 chr15 16296639 16297111 -69398643 - MLT1F LTR MaLR 0 542 3 1895 158 24 0 chr15 16297687 16297978 -69397776 + AluJb SINE Alu 1 298 -14 2420 80 0 10 chr15 16297979 16298293 -69397461 + AluY SINE Alu 1 311 0 560 290 155 87 chr15 16298391 16298726 -69397028 + L1MEd LINE L1 297 608 -5511 1595 192 11 4 chr15 16298726 16298997 -69396757 + AluJb SINE Alu 1 273 -39 560 290 155 87 chr15 16298997 16299037 -69396717 + L1MEd LINE L1 608 644 -5475 2184 142 0 0 chr15 16299037 16299340 -69396414 - AluSx SINE Alu -9 303 1 560 290 155 87 chr15 16299340 16299422 -69396332 + L1MEd LINE L1 644 786 -5333 296 154 123 0 chr15 16299619 16299684 -69396070 + MLT1K LTR MaLR 514 586 -2 1227 118 0 17 chr15 16300151 16300329 -69395425 - AluSg/x SINE Alu -1 311 137 821 286 165 16 chr15 16300964 16301327 -69394427 + L2 LINE L2 2896 3312 -1 1857 138 47 89 chr15 16302094 16302545 -69393209 - L1MD1 LINE L1 0 6242 5811 1212 171 120 47 chr15 16302564 16302838 -69392916 - AluJb SINE Alu -18 294 1 4219 80 4 2 chr15 16303826 16304379 -69391375 + MER41A LTR ERV1 1 554 0 1572 140 189 0 chr15 16304926 16305233 -69390521 - MER47A DNA MER2_type 0 366 2 372 303 99 1 chr15 16305960 16306071 -69389683 - MER5A DNA MER1_type 0 189 55 2020 140 0 32 chr15 16306071 16306379 -69389375 - AluSx SINE Alu -14 298 1 372 303 99 1 chr15 16306379 16306390 -69389364 - MER5A DNA MER1_type -134 55 46 1841 100 115 0 chr15 16306560 16306829 -69388925 - AluSq SINE Alu -13 300 1 305 310 0 0 chr15 16307665 16307752 -69388002 - LTR67 LTR ERVL -61 496 410 377 375 5 14 chr15 16308195 16308411 -69387343 + MLT1K LTR MaLR 127 340 -248 2124 123 18 26 chr15 16308609 16308991 -69386763 + L1MB2 LINE L1 5257 5635 -536 1961 121 21 12 chr15 16308991 16309314 -69386440 + L1MB2 LINE L1 5837 6169 -2 2217 107 3 0 chr15 16310600 16310889 -69384865 + AluSc SINE Alu 3 292 -17 5460 119 119 46 chr15 16311850 16312382 -69383372 + Tigger3b DNA MER2_type 1 493 -2535 1675 74 16 85 chr15 16312382 16312640 -69383114 - AluY SINE Alu -2 309 70 5460 119 119 46 chr15 16312640 16313253 -69382501 + Tigger3b DNA MER2_type 493 1230 -1 4841 160 6 50 chr15 16313639 16315030 -69380724 + L1PB4 LINE L1 4809 6144 -12 1840 247 106 22 chr15 16315115 16315918 -69379836 + L1MC4a LINE L1 5577 6446 -1362 381 121 30 0 chr15 16316038 16316104 -69379650 + L1PA16 LINE L1 6089 6156 -10 301 125 32 21 chr15 16318260 16318348 -69377406 + AluSp/q SINE Alu 252 298 -5 204 40 0 0 chr15 16318481 16318506 -69377248 + (A)n Simple_repeat Simple_repeat 1 25 0 201 310 0 23 chr15 16318894 16318981 -69376773 + T-rich Low_complexity Low_complexity 5 89 0 28 0 0 0 chr15 16318982 16319010 -69376744 + AT_rich Low_complexity Low_complexity 1 28 0 1959 154 95 31 chr15 16319232 16319685 -69376069 - MLT1D LTR MaLR -5 500 19 1734 223 133 21 chr15 16319913 16320446 -69375308 + MLT1E LTR MaLR 1 593 0 198 296 51 51 chr15 16321328 16321426 -69374328 - L2 LINE L2 -1 3271 3174 1625 155 182 22 chr15 16321874 16322242 -69373512 - MSTA LTR MaLR 0 428 2 423 0 0 0 chr15 16322242 16322289 -69373465 + (TG)n Simple_repeat Simple_repeat 2 48 0 719 307 16 0 chr15 16322446 16322638 -69373116 - MIR SINE MIR -49 213 19 2324 98 7 0 chr15 16324084 16324391 -69371363 + AluSp SINE Alu 1 309 -4 229 269 153 41 chr15 16324890 16325069 -69370685 + MIR SINE MIR 19 212 -50 250 175 25 0 chr15 16325241 16325321 -69370433 + (TA)n Simple_repeat Simple_repeat 2 83 0 893 146 0 127 chr15 16325321 16325526 -69370228 + FRAM SINE Alu 1 176 0 776 134 195 24 chr15 16325978 16326142 -69369612 + AluJb SINE Alu 96 287 -25 513 125 0 0 chr15 16326142 16326230 -69369524 + (GA)n Simple_repeat Simple_repeat 1 88 0 2062 145 3 3 chr15 16326871 16327182 -69368572 - AluSx SINE Alu -1 311 1 4028 129 83 8 chr15 16327282 16327417 -69368337 - L1MA9 LINE L1 -2 6310 6187 351 0 0 0 chr15 16327417 16327456 -69368298 + (TG)n Simple_repeat Simple_repeat 2 40 0 4028 129 83 8 chr15 16327456 16327793 -69367961 - L1MA9 LINE L1 -125 6187 5877 243 0 0 0 chr15 16327793 16327820 -69367934 + (TG)n Simple_repeat Simple_repeat 2 28 0 4028 129 83 8 chr15 16327820 16328081 -69367673 - L1MA9 LINE L1 -435 5877 5521 486 278 35 7 chr15 16328448 16328592 -69367162 - MIR3 SINE MIR -36 172 25 69 101 0 0 chr15 16329110 16329347 -69366407 + AT_rich Low_complexity Low_complexity 1 237 0 381 322 135 10 chr15 16329638 16329846 -69365908 + MIR SINE MIR 23 256 -6 280 185 136 0 chr15 16330618 16330699 -69365055 + L1ME LINE L1 5708 5799 -363 1988 74 0 19 chr15 16330815 16331084 -69364670 + L1PA8 LINE L1 5907 6170 -2 4205 101 3 15 chr15 16331158 16331813 -69363941 + L1MA3 LINE L1 5316 5962 -343 8405 82 12 2 chr15 16333089 16334308 -69361446 + L1P LINE L1 3700 4930 -1216 381 327 45 13 chr15 16335128 16335284 -69360470 - MIR SINE MIR -41 221 61 444 202 8 16 chr15 16335628 16335752 -69360002 + L1 LINE L1 2974 3096 -3050 * 6331 81 18 11 chr15 16335749 16336689 -69359065 + L1P LINE L1 3854 4800 -1346 2035 107 57 13 chr15 16337314 16337614 -69358140 - AluSp SINE Alu 0 313 1 242 337 81 12 chr15 16337814 16337900 -69357854 + L2 LINE L2 3160 3251 -21 3557 59 0 0 chr15 16338473 16338917 -69356837 + L1PA5 LINE L1 5698 6141 -13 249 326 41 20 chr15 16338956 16339054 -69356700 - L2 LINE L2 0 3272 3173 31 44 0 0 chr15 16339615 16339660 -69356094 + AT_rich Low_complexity Low_complexity 1 45 0 2388 80 10 0 chr15 16340724 16341023 -69354731 + AluSq SINE Alu 1 302 -11 216 182 0 0 chr15 16341383 16341427 -69354327 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr15 16341623 16341643 -69354111 + (CA)n Simple_repeat Simple_repeat 2 21 0 338 340 155 26 chr15 16342259 16342826 -69352928 + L2 LINE L2 189 828 -2486 602 339 127 31 chr15 16342878 16343831 -69351923 + L2 LINE L2 1807 2850 -464 424 355 46 30 chr15 16343882 16344079 -69351675 + L2 LINE L2 3073 3272 0 626 182 42 14 chr15 16346122 16346265 -69349489 - L1MA10 LINE L1 -7 6327 6181 394 233 79 133 chr15 16347180 16347700 -69348054 - MLT1J LTR MaLR -19 492 1 2273 108 3 0 chr15 16348686 16348991 -69346763 + AluSp SINE Alu 1 306 -7 255 300 107 50 chr15 16349085 16349225 -69346529 + MIR3 SINE MIR 20 167 -41 478 321 16 21 chr15 16349761 16349951 -69345803 - MER5A DNA MER1_type 0 189 1 32 0 0 0 chr15 16350321 16350353 -69345401 + AT_rich Low_complexity Low_complexity 1 32 0 352 217 52 17 chr15 16350539 16350654 -69345100 + MER34 LTR ERV1 1 119 -423 1084 136 63 144 chr15 16350688 16351006 -69344748 + MER34B LTR ERV1 208 489 -96 1207 162 79 107 chr15 16351006 16351324 -69344430 - AluJo SINE Alu 0 310 1 1084 136 63 144 chr15 16351324 16351414 -69344340 + MER34B LTR ERV1 489 585 0 581 182 27 0 chr15 16351708 16351818 -69343936 + MER34B LTR ERV1 161 273 -292 2163 126 3 0 chr15 16351996 16352282 -69343472 + AluSp SINE Alu 1 287 -26 303 113 0 0 chr15 16352295 16352348 -69343406 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 664 232 32 0 chr15 16352437 16352562 -69343192 + L2 LINE L2 3185 3313 0 297 198 161 0 chr15 16352682 16352763 -69342991 - MER63A DNA MER1_type -36 174 81 363 165 101 13 chr15 16352847 16352926 -69342828 - MER63A DNA MER1_type 0 86 1 22 35 0 0 chr15 16353290 16353319 -69342435 + AT_rich Low_complexity Low_complexity 1 29 0 1294 201 84 4 chr15 16354084 16354357 -69341397 - AluJo SINE Alu -16 296 2 1003 151 0 24 chr15 16354421 16354587 -69341167 + FRAM SINE Alu 8 169 -7 193 182 91 0 chr15 16354786 16354830 -69340924 - L2 LINE L2 -15 3298 3251 1672 192 69 65 chr15 16355152 16355616 -69340138 + MLT1C LTR MaLR 1 466 -1 9334 26 6 244 chr15 16355804 16357622 -69338132 - SVA Other Other 0 1386 2 225 154 0 0 chr15 16357627 16357666 -69338088 + G-rich Low_complexity Low_complexity 2 40 0 1461 174 18 82 chr15 16358400 16358728 -69337026 - AluJo SINE Alu -5 307 1 499 242 92 0 chr15 16359118 16359238 -69336516 + FLAM_A SINE Alu 1 131 -2 1242 7 0 0 chr15 16359952 16360087 -69335667 - AluYb8 SINE Alu -5 313 179 25 0 0 0 chr15 16360089 16360114 -69335640 + AT_rich Low_complexity Low_complexity 1 25 0 379 278 0 0 chr15 16361416 16361506 -69334248 + MER5A DNA MER1_type 9 98 -91 1358 167 188 0 chr15 16361506 16361788 -69333966 - ERVL LTR ERVL -653 5111 4777 591 316 69 48 chr15 16361982 16362359 -69333395 + L3 LINE CR1 297 681 -896 29 84 0 0 chr15 16362438 16362509 -69333245 + AT_rich Low_complexity Low_complexity 1 71 0 402 282 98 63 chr15 16364084 16364145 -69331609 + MER5A DNA MER1_type 10 67 -122 2053 136 0 32 chr15 16364145 16364453 -69331301 + AluSx SINE Alu 1 298 -14 402 282 98 63 chr15 16364453 16364565 -69331189 + MER5A DNA MER1_type 67 189 0 1712 140 189 0 chr15 16365294 16365601 -69330153 + MER47A DNA MER2_type 2 366 0 4344 85 2 2 chr15 16366148 16366702 -69329052 - MER41A LTR ERV1 0 554 1 459 294 73 25 chr15 16367676 16367689 -69328065 + L1MB5 LINE L1 5773 5784 -390 1216 171 120 47 chr15 16367689 16367963 -69327791 + AluJb SINE Alu 1 294 -8 459 294 73 25 chr15 16367963 16368194 -69327560 + L1MB5 LINE L1 5784 6029 -145 * 2049 138 47 89 chr15 16367982 16368433 -69327321 + L1MD1 LINE L1 5811 6242 0 696 292 163 14 chr15 16369200 16369563 -69326191 - L2 LINE L2 -1 3312 2896 1234 118 0 17 chr15 16370198 16370376 -69325378 + AluSg/x SINE Alu 135 309 -1 660 288 81 76 chr15 16370843 16371301 -69324453 - MLT1K LTR MaLR -2 586 127 236 290 14 0 chr15 16371460 16371529 -69324225 + LTR67 LTR ERVL 111 180 -377 330 310 0 0 chr15 16371744 16371831 -69323923 + LTR67 LTR ERVL 410 496 -61 1851 100 115 0 chr15 16372667 16372936 -69322818 + AluSq SINE Alu 1 300 -13 2098 127 7 0 chr15 16373117 16373445 -69322309 + AluSx SINE Alu 1 330 0 260 229 62 10 chr15 16373446 16373542 -69322212 + L1ME4a LINE L1 5977 6077 -44 2094 133 3 13 chr15 16374701 16375016 -69320738 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 16375256 16375629 -69320125 + L1MB7 LINE L1 5567 5952 -232 1920 183 0 0 chr15 16375629 16375941 -69319813 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 16375941 16376131 -69319623 + L1MB7 LINE L1 5952 6108 -76 2353 74 0 0 chr15 16376131 16376443 -69319311 + AluY SINE Alu 1 312 0 2849 138 48 84 chr15 16376443 16376516 -69319238 + L1MB7 LINE L1 6108 6182 -2 2344 92 16 3 chr15 16376673 16376976 -69318778 - AluSx SINE Alu -5 307 1 1739 208 22 22 chr15 16377490 16377861 -69317893 - MLT1A2 LTR MaLR 0 374 4 2167 106 0 22 chr15 16377959 16378271 -69317483 + AluSx SINE Alu 1 305 -7 2252 95 0 20 chr15 16379366 16379671 -69316083 + AluSq SINE Alu 1 299 -14 1917 137 20 0 chr15 16379708 16380001 -69315753 - AluSx SINE Alu -13 299 1 400 273 52 38 chr15 16380191 16380414 -69315340 + AluSq SINE Alu 85 286 -17 957 219 9 14 chr15 16380994 16381209 -69314545 - AluSp SINE Alu -99 214 1 2309 100 13 0 chr15 16381339 16381638 -69314116 + AluSq SINE Alu 1 303 -10 198 143 0 0 chr15 16382394 16382429 -69313325 + (TATG)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr15 16382633 16382653 -69313101 + (CA)n Simple_repeat Simple_repeat 2 21 0 858 155 143 31 chr15 16386514 16386737 -69309017 - MLT1G3 LTR MaLR -180 410 149 745 53 0 11 chr15 16386757 16386852 -69308902 - HY3 scRNA scRNA -2 99 6 791 220 86 53 chr15 16386863 16387072 -69308682 - MLT1G1 LTR MaLR -379 216 1 2034 142 10 0 chr15 16387119 16387421 -69308333 + AluSx SINE Alu 1 305 -7 1583 175 10 109 chr15 16387522 16387758 -69307996 - MLT1A1 LTR MaLR 0 365 184 820 174 0 8 chr15 16387758 16387890 -69307864 - FLAM_A SINE Alu -1 132 2 1583 175 10 109 chr15 16387890 16388058 -69307696 - MLT1A1 LTR MaLR -181 184 1 2485 182 9 66 chr15 16388365 16388908 -69306846 + MLT2B1 LTR ERVL 1 512 -8 22 0 0 0 chr15 16388916 16388938 -69306816 + AT_rich Low_complexity Low_complexity 1 22 0 674 269 48 88 chr15 16389489 16389909 -69305845 + MLT1I LTR MaLR 5 407 -2 222 37 0 0 chr15 16390329 16390356 -69305398 + (TTG)n Simple_repeat Simple_repeat 1 27 0 215 152 22 0 chr15 16390455 16390501 -69305253 + GA-rich Low_complexity Low_complexity 2 48 0 257 253 133 40 chr15 16390952 16391102 -69304652 + MIR SINE MIR 85 248 -14 1534 202 7 7 chr15 16391716 16392013 -69303741 - AluJb SINE Alu 0 312 16 594 279 29 39 chr15 16392035 16392315 -69303439 - AluY SINE Alu -24 287 11 1339 104 21 31 chr15 16392420 16392612 -69303142 - AluY SINE Alu -121 190 1 647 294 58 25 chr15 16392618 16392945 -69302809 - MARNA DNA Mariner -36 550 213 1597 190 37 55 chr15 16393181 16393376 -69302378 + L1M4 LINE L1 1535 1732 -4912 1931 108 6 94 chr15 16393376 16393718 -69302036 + AluSx SINE Alu 1 312 0 1597 190 37 55 chr15 16393718 16393925 -69301829 + L1M4 LINE L1 1732 2030 -4614 880 203 0 0 chr15 16394141 16394289 -69301465 - MER77 LTR ERV1 -457 148 1 315 136 0 68 chr15 16394294 16394353 -69301401 + L1MC5 LINE L1 7529 7583 -378 2173 227 14 41 chr15 16394397 16394987 -69300767 - L1ME1 LINE L1 -5 6161 5588 1256 208 48 30 chr15 16394983 16395247 -69300507 + L1ME LINE L1 4985 5243 -923 * 2359 98 0 0 chr15 16395247 16395543 -69300211 + AluSg SINE Alu 1 296 -14 1256 208 48 30 chr15 16395543 16395875 -69299879 + L1ME LINE L1 5243 5590 -576 1066 265 65 6 chr15 16395892 16396238 -69299516 - L1MC4 LINE L1 -1 8041 7690 429 216 128 57 chr15 16396252 16396311 -69299443 + L1MC5 LINE L1 7600 7653 -308 1643 127 76 22 chr15 16396311 16396587 -69299167 - AluJo SINE Alu -21 291 1 429 216 128 57 chr15 16396587 16396823 -69298931 + L1MC5 LINE L1 7653 7916 -45 376 306 185 21 chr15 16396864 16397204 -69298550 - L2 LINE L2 -568 2746 2351 2244 71 7 10 chr15 16397825 16398120 -69297634 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr15 16398527 16398558 -69297196 + GC_rich Low_complexity Low_complexity 1 31 0 1050 89 272 0 chr15 16399294 16399474 -69296280 + MER30 DNA MER1_type 2 230 0 1823 157 31 3 chr15 16399663 16399956 -69295798 - AluJo SINE Alu -11 301 1 390 182 0 26 chr15 16400101 16400178 -69295576 - L2 LINE L2 -50 3263 3189 217 178 22 0 chr15 16400666 16400711 -69295043 - L2 LINE L2 -1 3271 3226 2069 109 14 0 chr15 16400750 16401034 -69294720 - AluSx SINE Alu -24 288 1 679 259 89 4 chr15 16401036 16401272 -69294482 - MER46C DNA MER2_type -15 323 68 446 299 118 18 chr15 16401476 16401807 -69293947 - L1ME1 LINE L1 -2191 5617 5254 460 277 115 31 chr15 16402312 16402590 -69293164 + L2 LINE L2 3013 3270 -2 402 282 135 0 chr15 16402964 16403122 -69292632 + MIR SINE MIR 6 182 -62 449 285 199 8 chr15 16403336 16403592 -69292162 + L2 LINE L2 3008 3312 -1 24 32 0 0 chr15 16403706 16403737 -69292017 + AT_rich Low_complexity Low_complexity 1 31 0 493 237 59 13 chr15 16404417 16404569 -69291185 - MER20B DNA MER1_type -618 165 7 21 71 0 0 chr15 16404940 16404982 -69290772 + AT_rich Low_complexity Low_complexity 1 42 0 2359 193 46 97 chr15 16405053 16405819 -69289935 - MER21B LTR ERV1 -124 739 13 245 256 0 13 chr15 16405907 16405985 -69289769 + L1ME LINE L1 5684 5760 -361 1063 191 19 5 chr15 16405988 16406198 -69289556 - MER20 DNA MER1_type -3 216 4 180 0 0 0 chr15 16407677 16407697 -69288057 + (T)n Simple_repeat Simple_repeat 1 20 0 1800 175 30 7 chr15 16408008 16408311 -69287443 + AluJo SINE Alu 2 311 -1 2536 50 0 7 chr15 16408761 16409061 -69286693 - AluY SINE Alu -13 298 1 826 152 8 0 chr15 16409476 16409608 -69286146 - FLAM_C SINE Alu 0 133 1 27 49 0 0 chr15 16409610 16409651 -69286103 + AT_rich Low_complexity Low_complexity 1 41 0 10464 115 22 13 chr15 16409686 16411402 -69284352 + Tigger1 DNA MER2_type 688 2418 0 548 287 153 18 chr15 16411830 16412112 -69283642 - L2 LINE L2 0 3313 2994 2269 186 59 21 chr15 16414393 16414711 -69281043 - L1MA9 LINE L1 -190 6122 5771 243 0 0 0 chr15 16414711 16414738 -69281016 + (TG)n Simple_repeat Simple_repeat 2 28 0 2269 186 59 21 chr15 16414738 16414999 -69280755 - L1MA9 LINE L1 -541 5771 5521 421 198 50 20 chr15 16415573 16415674 -69280080 + U13 snRNA snRNA 1 104 0 1057 120 0 7 chr15 16416043 16416220 -69279534 - AluSp SINE Alu 0 312 137 256 105 0 0 chr15 16416586 16416624 -69279130 + AluSg/x SINE Alu 196 233 -67 486 264 68 71 chr15 16416805 16417116 -69278638 - L1M4 LINE L1 -1334 4812 4503 1723 154 54 13 chr15 16417125 16417440 -69278314 - AluJo SINE Alu 0 328 2 2064 157 0 6 chr15 16417699 16418011 -69277743 - AluSg SINE Alu 0 310 1 204 200 0 0 chr15 16418794 16418839 -69276915 + A-rich Low_complexity Low_complexity 5 49 0 2188 122 0 3 chr15 16419125 16419419 -69276335 - AluSx SINE Alu -19 293 1 247 317 39 10 chr15 16419738 16419842 -69275912 + MIR SINE MIR 47 153 -109 1133 114 0 0 chr15 16420168 16420343 -69275411 - L1MA5A LINE L1 0 6297 6123 2327 97 0 0 chr15 16420871 16421169 -69274585 - AluSg SINE Alu -12 298 1 679 133 0 0 chr15 16422155 16422253 -69273501 + AluJ/FLAM SINE Alu 2 99 -213 633 293 160 30 chr15 16422260 16422598 -69273156 + L2 LINE L2 2921 3302 -11 257 193 0 0 chr15 16422933 16422990 -69272764 - L1MB5 LINE L1 -8 6166 6110 2330 82 3 3 chr15 16424747 16425051 -69270703 + AluY SINE Alu 1 304 -7 181 298 208 29 chr15 16425122 16425401 -69270353 - L2 LINE L2 -637 2677 2349 762 154 29 0 chr15 16426222 16426358 -69269396 + MER3 DNA MER1_type 5 144 -65 902 193 12 6 chr15 16426979 16427140 -69268614 + FRAM SINE Alu 2 163 -3 781 173 7 22 chr15 16427327 16427466 -69268288 - FRAM SINE Alu -18 158 22 918 207 25 0 chr15 16429249 16429447 -69266307 + MER20 DNA MER1_type 5 207 -12 2208 101 0 7 chr15 16429992 16430288 -69265466 - AluSq SINE Alu -19 294 1 1760 139 3 96 chr15 16431052 16431384 -69264370 + AluJb SINE Alu 1 301 -1 240 200 80 27 chr15 16431548 16431623 -69264131 + L1ME4a LINE L1 5944 6022 -99 192 152 0 0 chr15 16433738 16433771 -69261983 + (TA)n Simple_repeat Simple_repeat 2 34 0 2463 78 0 0 chr15 16434218 16434524 -69261230 - AluY SINE Alu -5 306 1 635 276 87 0 chr15 16434784 16434980 -69260774 + MIR SINE MIR 29 241 -21 436 288 131 0 chr15 16435270 16435499 -69260255 + L1MC4a LINE L1 5672 5930 -1878 25 65 0 0 chr15 16435665 16435711 -69260043 + AT_rich Low_complexity Low_complexity 1 46 0 1632 159 9 73 chr15 16435967 16436106 -69259648 + AluJo SINE Alu 1 147 -165 1987 128 0 24 chr15 16436106 16436424 -69259330 + AluSx SINE Alu 1 311 0 1632 159 9 73 chr15 16436424 16436609 -69259145 + AluJo SINE Alu 147 306 -6 816 229 34 0 chr15 16436651 16436826 -69258928 - MER5A DNA MER1_type -8 181 1 1820 153 31 3 chr15 16436941 16437229 -69258525 + AluJb SINE Alu 1 296 -16 213 311 0 49 chr15 16438172 16438233 -69257521 + MIR SINE MIR 26 83 -125 471 335 88 13 chr15 16439953 16440180 -69255574 - MIR SINE MIR -8 254 11 371 283 0 19 chr15 16440693 16440799 -69254955 - MIR SINE MIR -80 182 79 503 174 55 0 chr15 16441755 16441915 -69253839 - AluSg/x SINE Alu 0 358 193 203 0 37 0 chr15 16441998 16442025 -69253729 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1852 127 54 42 chr15 16442063 16442394 -69253360 - MER1B DNA MER1_type -1 336 2 850 93 36 0 chr15 16443474 16443613 -69252141 + MER30 DNA MER1_type 1 144 -86 890 171 0 0 chr15 16445572 16445718 -69250036 - FRAM SINE Alu -30 146 1 2325 84 7 0 chr15 16445963 16446249 -69249505 + AluSq SINE Alu 9 296 -17 2626 40 3 0 chr15 16446790 16447089 -69248665 - AluY SINE Alu -11 300 1 13457 74 5 7 chr15 16447416 16448313 -69247441 - L1PA7 LINE L1 0 6154 5257 2143 109 3 0 chr15 16448313 16448607 -69247147 - AluSp SINE Alu -18 295 1 13457 74 5 7 chr15 16448607 16450300 -69245454 - L1PA7 LINE L1 -897 5257 3565 1336 86 43 0 chr15 16450301 16450510 -69245244 + L1PA7 LINE L1 3333 3550 -2596 577 253 112 18 chr15 16450948 16451142 -69244612 + MIR SINE MIR 15 225 -37 2254 100 0 3 chr15 16451437 16451754 -69244000 + AluSq SINE Alu 1 316 0 22 0 0 0 chr15 16452404 16452426 -69243328 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 16452614 16452636 -69243118 + AT_rich Low_complexity Low_complexity 1 22 0 1640 186 75 3 chr15 16453200 16453518 -69242236 + MER58B DNA MER1_type 1 341 0 2202 136 0 0 chr15 16453584 16453885 -69241869 + AluSx SINE Alu 1 301 -11 205 269 66 86 chr15 16455745 16455942 -69239812 - L2 LINE L2 -349 2965 2773 750 252 60 28 chr15 16456234 16456452 -69239302 + MIR SINE MIR 5 229 -33 1221 94 0 0 chr15 16457896 16458108 -69237646 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 1028 281 107 69 chr15 16458150 16459163 -69236591 - L2 LINE L2 -83 3230 2164 1806 162 0 3 chr15 16459188 16459472 -69236282 + AluJo SINE Alu 2 284 -28 1834 152 0 10 chr15 16459717 16460006 -69235748 - AluSq SINE Alu -27 286 1 236 250 42 28 chr15 16460428 16460572 -69235182 + T-rich Low_complexity Low_complexity 5 150 0 3084 150 16 6 chr15 16460572 16461071 -69234683 - L1MA9 LINE L1 0 6312 5809 2048 132 0 20 chr15 16461287 16461590 -69234164 + AluJb SINE Alu 1 297 -15 1685 159 14 10 chr15 16461888 16462184 -69233570 + AluJb SINE Alu 1 297 -15 183 139 0 0 chr15 16463716 16463752 -69232002 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 16464774 16464796 -69230958 + AT_rich Low_complexity Low_complexity 1 22 0 1325 82 0 22 chr15 16466931 16467114 -69228640 + AluSg/x SINE Alu 126 304 -8 394 273 55 42 chr15 16467194 16467359 -69228395 + MER5B DNA MER1_type 2 168 -10 300 122 71 71 chr15 16467637 16467735 -69228019 + L1ME4a LINE L1 6023 6120 -1 859 288 82 39 chr15 16469401 16469887 -69225867 + L1MB7 LINE L1 5314 5820 -1988 1789 164 21 0 chr15 16469892 16470178 -69225576 + AluJo SINE Alu 1 292 -20 915 139 0 8 chr15 16470186 16470315 -69225439 - FLAM_C SINE Alu -5 128 1 1174 188 125 53 chr15 16470374 16470694 -69225060 - MER2 DNA MER2_type 0 344 2 855 106 0 0 chr15 16470848 16470961 -69224793 + AluSg/x SINE Alu 173 285 -25 2389 86 0 0 chr15 16471110 16471413 -69224341 - AluY SINE Alu -8 303 1 343 187 53 53 chr15 16471447 16471522 -69224232 - MER2 DNA MER2_type -3 342 268 565 220 0 0 chr15 16472398 16472507 -69223247 + L1MB7 LINE L1 6069 6177 -7 200 308 0 19 chr15 16473354 16473406 -69222348 - MIR SINE MIR -112 96 46 190 309 98 32 chr15 16474348 16474471 -69221283 + L2 LINE L2 3173 3303 -10 1423 181 18 14 chr15 16474612 16474933 -69220821 - AluJb SINE Alu 0 322 1 187 178 22 44 chr15 16475657 16475702 -69220052 - L2 LINE L2 -16 3256 3213 474 339 0 16 chr15 16478468 16478595 -69217159 - MIR3 SINE MIR -48 160 36 24 32 0 0 chr15 16478655 16478686 -69217068 + AT_rich Low_complexity Low_complexity 1 31 0 842 156 0 0 chr15 16478710 16478838 -69216916 - FRAM SINE Alu -9 167 40 1957 105 36 129 chr15 16478920 16479331 -69216423 - THE1C LTR MaLR -2 373 1 10718 87 78 3 chr15 16479331 16480802 -69214952 - THE1B-int LTR MaLR 0 1580 1 2736 108 5 24 chr15 16480802 16481173 -69214581 - THE1B LTR MaLR 0 364 1 399 229 94 25 chr15 16482971 16483048 -69212706 - L1MD3 LINE L1 -21 7974 7904 636 14 0 0 chr15 16483048 16483121 -69212633 + (TA)n Simple_repeat Simple_repeat 1 73 0 1924 141 0 7 chr15 16483121 16483404 -69212350 - AluJb SINE Alu -26 286 6 399 229 94 25 chr15 16483404 16483553 -69212201 - L1MD3 LINE L1 -90 7905 6048 * 1126 156 46 25 chr15 16483540 16483778 -69211976 - L1MDa LINE L1 -4221 2319 2077 * 1213 178 55 38 chr15 16483773 16484066 -69211688 - L1MDa LINE L1 -4724 1816 1519 572 219 0 0 chr15 16484087 16484183 -69211571 - AluJ/FLAM SINE Alu -215 97 2 1352 151 73 13 chr15 16484184 16484470 -69211284 - MER33 DNA MER1_type -37 287 1 2238 141 6 35 chr15 16484981 16485328 -69210426 + MER1B DNA MER1_type 1 337 0 1906 142 9 28 chr15 16485440 16485758 -69209996 + AluJo SINE Alu 1 312 0 1743 141 6 48 chr15 16485924 16486071 -69209683 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 16486071 16486104 -69209650 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1743 141 6 48 chr15 16486104 16486268 -69209486 + AluSx SINE Alu 130 299 -13 1724 180 39 25 chr15 16486708 16487141 -69208613 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 16487744 16487787 -69207967 + (TG)n Simple_repeat Simple_repeat 2 45 0 2135 95 39 0 chr15 16488300 16488585 -69207169 - AluSg SINE Alu -14 296 1 1286 135 31 0 chr15 16488618 16488811 -69206943 - AluSg/x SINE Alu -10 302 104 184 312 92 72 chr15 16488971 16489375 -69206379 - L2 LINE L2 -340 2974 2563 1164 138 159 0 chr15 16489577 16489766 -69205988 - MER20 DNA MER1_type 0 219 1 1560 151 28 31 chr15 16490073 16490364 -69205390 + AluJo SINE Alu 14 303 -9 348 257 79 46 chr15 16490669 16490821 -69204933 + L1ME LINE L1 5536 5692 -429 1374 148 80 82 chr15 16490821 16491198 -69204556 - Charlie1b DNA MER1_type 0 523 148 1724 180 39 25 chr15 16491675 16492108 -69203646 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 16492711 16492754 -69203000 + (TG)n Simple_repeat Simple_repeat 2 45 0 2256 62 28 0 chr15 16493267 16493556 -69202198 - AluY SINE Alu -14 297 1 186 290 65 0 chr15 16493629 16493691 -69202063 + L2 LINE L2 1769 1834 -1480 527 217 17 0 chr15 16493864 16493984 -69201770 - L1M4 LINE L1 -2453 3693 3572 857 246 42 32 chr15 16494017 16494400 -69201354 - L1M4 LINE L1 -2685 3461 3056 681 250 90 5 chr15 16494401 16494589 -69201165 + MER58C DNA MER1_type 2 205 -10 530 223 206 40 chr15 16494589 16494749 -69201005 - L1M4 LINE L1 -3673 2473 2341 784 139 49 8 chr15 16494749 16494871 -69200883 - FLAM_A SINE Alu -6 127 1 530 223 206 40 chr15 16494871 16494928 -69200826 - L1M4 LINE L1 -3805 2341 2295 2147 117 30 0 chr15 16494928 16495228 -69200526 - AluSg SINE Alu -1 309 1 530 223 206 40 chr15 16495228 16495256 -69200498 - L1M4 LINE L1 -3851 2295 2186 1286 135 31 0 chr15 16495261 16495454 -69200300 - AluSg/x SINE Alu -10 300 102 184 312 92 72 chr15 16495614 16496018 -69199736 - L2 LINE L2 -340 2974 2563 1137 143 159 0 chr15 16496220 16496409 -69199345 - MER20 DNA MER1_type 0 219 1 1728 155 23 26 chr15 16496703 16497007 -69198747 + AluJo SINE Alu 1 303 -9 348 257 79 46 chr15 16497312 16497464 -69198290 + L1ME4a LINE L1 5536 5692 -429 2313 163 58 61 chr15 16497464 16497985 -69197769 - Charlie1b DNA MER1_type 0 523 5 337 265 97 62 chr15 16497993 16498139 -69197615 + L1ME4a LINE L1 5743 5882 -239 2411 63 3 3 chr15 16498139 16498440 -69197314 + AluY SINE Alu 1 301 -10 337 265 97 62 chr15 16498440 16498602 -69197152 + L1ME4a LINE L1 5882 6062 -59 1275 211 8 8 chr15 16498610 16498857 -69196897 - AluJo SINE Alu -17 295 49 1151 190 47 9 chr15 16498921 16499132 -69196622 + MER20 DNA MER1_type 1 219 0 195 380 44 9 chr15 16501332 16501445 -69194309 - L2 LINE L2 -6 3266 3150 2245 107 0 0 chr15 16501489 16501780 -69193974 + AluSx SINE Alu 1 291 -21 2177 121 0 0 chr15 16502260 16502557 -69193197 - AluSx SINE Alu -15 297 1 1025 181 78 45 chr15 16503583 16503826 -69191928 - MIR SINE MIR -11 251 1 24 0 0 0 chr15 16503914 16503938 -69191816 + AT_rich Low_complexity Low_complexity 1 24 0 2562 75 0 3 chr15 16504276 16504584 -69191170 + AluSq SINE Alu 1 307 -6 2026 146 13 7 chr15 16505719 16506021 -69189733 + AluJo SINE Alu 1 304 -8 507 118 0 0 chr15 16506870 16506955 -69188799 + (CTG)n Simple_repeat Simple_repeat 2 86 0 701 282 42 6 chr15 16509912 16510140 -69185614 + MIR SINE MIR 28 262 0 2698 45 0 3 chr15 16510226 16510534 -69185220 + AluY SINE Alu 1 307 -4 221 211 53 0 chr15 16510573 16510630 -69185124 + MIR SINE MIR 38 97 -111 704 313 76 33 chr15 16510647 16511309 -69184445 - L2 LINE L2 0 3313 2622 296 325 8 32 chr15 16511502 16511628 -69184126 + LTR67 LTR ERVL 93 215 -342 1023 153 16 37 chr15 16511645 16511835 -69183919 - MER30B DNA MER1_type -4 186 1 591 293 102 9 chr15 16511944 16512169 -69183585 + L2 LINE L2 2226 2471 -843 948 198 0 0 chr15 16512169 16512341 -69183413 - AluJb SINE Alu -19 293 122 271 254 0 0 chr15 16512438 16512497 -69183257 + MLT1E2 LTR MaLR 2 60 -566 505 309 85 11 chr15 16512562 16512750 -69183004 + MIR SINE MIR 13 214 -48 627 165 127 7 chr15 16512767 16512908 -69182846 - MER3 DNA MER1_type -63 146 2 743 175 126 10 chr15 16512995 16513201 -69182553 + MER113 DNA MER1_type? 15 244 -277 257 266 13 0 chr15 16513913 16513992 -69181762 + (TTAGGG)n Simple_repeat Simple_repeat 5 84 0 439 200 24 0 chr15 16514094 16514179 -69181575 + AluJb SINE Alu 203 289 -23 1115 211 89 28 chr15 16514185 16514512 -69181242 - LTR37A LTR ERV1 -72 354 8 204 177 16 16 chr15 16514514 16514576 -69181178 + T-rich Low_complexity Low_complexity 4 65 0 498 140 30 30 chr15 16514601 16514701 -69181053 + MIR SINE MIR 97 196 -66 237 266 295 0 chr15 16515370 16515543 -69180211 + MIR SINE MIR 28 251 -11 338 268 41 0 chr15 16516103 16516200 -69179554 - MIR SINE MIR -11 251 151 356 264 97 32 chr15 16516481 16516636 -69179118 + MIR SINE MIR 49 213 -49 529 236 28 88 chr15 16517599 16517815 -69177939 - MIR3 SINE MIR -3 205 3 225 0 0 0 chr15 16519449 16519474 -69176280 + (TTA)n Simple_repeat Simple_repeat 2 26 0 852 100 0 9 chr15 16519474 16519584 -69176170 - AluJb SINE Alu -191 121 13 587 251 53 6 chr15 16519729 16519900 -69175854 + MIR3 SINE MIR 9 187 -21 2143 122 3 22 chr15 16520892 16521204 -69174550 - AluJb SINE Alu -6 306 1 2277 133 37 50 chr15 16521206 16521664 -69174090 + Tigger2 DNA MER2_type 2267 2718 0 675 298 105 16 chr15 16521941 16522199 -69173555 + Charlie2 DNA MER1_type 24 304 -2558 1762 197 69 36 chr15 16522208 16522722 -69173032 + Charlie2 DNA MER1_type 1873 2408 -454 2360 90 7 3 chr15 16522722 16523022 -69172732 - AluSc SINE Alu -8 301 1 1762 197 69 36 chr15 16523022 16523055 -69172699 + Charlie2 DNA MER1_type 2408 2438 -424 1079 162 6 11 chr15 16523076 16523255 -69172499 - AluJb SINE Alu -2 310 133 794 177 32 57 chr15 16523255 16523286 -69172468 + Charlie2 DNA MER1_type 2476 2506 -356 2136 157 0 0 chr15 16523286 16523598 -69172156 + AluJb SINE Alu 1 312 0 794 177 32 57 chr15 16523598 16523814 -69171940 + Charlie2 DNA MER1_type 2506 2717 -145 407 237 34 0 chr15 16523870 16523988 -69171766 + Charlie2 DNA MER1_type 2710 2831 -31 1975 140 0 28 chr15 16525891 16526212 -69169542 + AluJb SINE Alu 1 312 0 363 192 0 55 chr15 16526661 16526734 -69169020 + MER45A DNA AcHobo 24 92 -86 981 140 0 7 chr15 16526748 16526898 -69168856 - AluJ SINE Alu -24 288 140 2001 160 3 3 chr15 16526903 16527203 -69168551 - AluJb SINE Alu -11 301 2 356 189 54 0 chr15 16527203 16527277 -69168477 + MER45A DNA AcHobo 100 177 -1 2514 51 7 0 chr15 16528426 16528720 -69167034 + AluY SINE Alu 1 296 -15 737 196 0 0 chr15 16528829 16528962 -69166792 - AluJ SINE Alu -169 133 1 3589 142 115 38 chr15 16529045 16530429 -69165325 - pTR5 LTR ERV1 0 2606 1524 28 0 0 0 chr15 16531243 16531271 -69164483 + AT_rich Low_complexity Low_complexity 1 28 0 868 224 0 0 chr15 16531275 16531431 -69164323 - FAM SINE Alu -19 156 1 320 259 142 43 chr15 16531560 16531722 -69164032 + L1MC/D LINE L1 5269 5446 -796 654 159 48 0 chr15 16531740 16531866 -69163888 + FLAM_C SINE Alu 12 143 0 1950 85 0 85 chr15 16531872 16532189 -69163565 + AluY SINE Alu 2 291 -20 343 247 0 0 chr15 16532285 16532370 -69163384 + FRAM SINE Alu 67 151 -15 665 94 19 0 chr15 16532383 16532489 -69163265 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 312 314 39 0 chr15 16532744 16532846 -69162908 - MIR SINE MIR -107 155 50 * 526 279 70 35 chr15 16532830 16533031 -69162723 - MIR SINE MIR -35 227 20 186 254 100 36 chr15 16533787 16533897 -69161857 - L2 LINE L2 -219 3053 2937 249 362 57 0 chr15 16534043 16534148 -69161606 + MER91A DNA MER1_type 84 194 -2 772 219 60 0 chr15 16534193 16534376 -69161378 + MER3 DNA MER1_type 15 208 -1 242 246 62 0 chr15 16534324 16534389 -69161365 - MER3 DNA MER1_type -108 101 33 * 262 325 26 34 chr15 16534404 16534521 -69161233 + L2 LINE L2 3198 3313 0 388 189 78 0 chr15 16534593 16534683 -69161071 - L1MB2 LINE L1 -7 6164 6068 202 200 218 0 chr15 16534692 16534747 -69161007 + L2 LINE L2 3186 3252 -20 2308 90 28 0 chr15 16534923 16535212 -69160542 + AluSx SINE Alu 1 297 -15 281 309 64 9 chr15 16535652 16535762 -69159992 + MIR SINE MIR 140 255 -7 400 270 108 82 chr15 16535895 16536198 -69159556 + L2 LINE L2 2466 2759 -554 1885 139 0 63 chr15 16536198 16536528 -69159226 + AluJb SINE Alu 1 311 0 1583 134 3 49 chr15 16536529 16536834 -69158920 - L1MB8 LINE L1 -9 6169 5879 400 270 108 82 chr15 16536834 16537110 -69158644 + L2 LINE L2 2758 3061 -252 1628 152 55 52 chr15 16537199 16537561 -69158193 + MLT1A1 LTR MaLR 1 363 -2 1609 144 4 38 chr15 16537863 16538164 -69157590 + AluJo SINE Alu 28 319 0 447 203 39 52 chr15 16538171 16538286 -69157468 + L1MC4a LINE L1 5507 5622 -562 337 259 215 19 chr15 16538339 16538544 -69157210 + L1MC4a LINE L1 5719 5963 -1845 29 0 0 0 chr15 16538673 16538702 -69157052 + AT_rich Low_complexity Low_complexity 1 29 0 412 277 45 0 chr15 16538836 16538948 -69156806 + L2 LINE L2 3151 3267 -5 202 259 0 19 chr15 16541768 16541822 -69153932 - L2 LINE L2 -81 3191 3139 232 213 0 0 chr15 16542103 16542150 -69153604 - L2 LINE L2 -210 3062 3016 417 224 0 0 chr15 16542497 16542573 -69153181 + MER21B LTR ERV1 21 96 -767 1117 256 59 92 chr15 16542635 16543212 -69152542 + MER21B LTR ERV1 126 683 -180 3267 189 150 14 chr15 16543212 16543972 -69151782 - MER21B LTR ERV1 0 863 1 245 188 0 87 chr15 16543972 16544041 -69151713 + MER21B LTR ERV1 677 739 -124 361 188 12 30 chr15 16544712 16544735 -69151019 + L1MC4 LINE L1 1982 2004 -6318 2221 114 0 0 chr15 16544735 16545024 -69150730 + AluSx SINE Alu 1 289 -23 361 188 12 30 chr15 16545024 16545087 -69150667 + L1MC4 LINE L1 2004 6999 -1323 699 276 36 78 chr15 16545284 16545617 -69150137 - MLT1I LTR MaLR 0 409 91 378 246 120 28 chr15 16545792 16545934 -69149820 - MER117 DNA MER1_type -40 157 3 248 130 22 0 chr15 16546224 16546270 -69149484 + GA-rich Low_complexity Low_complexity 3 49 0 22 35 0 0 chr15 16546446 16546475 -69149279 + AT_rich Low_complexity Low_complexity 1 29 0 313 307 10 10 chr15 16547878 16547979 -69147775 - L2 LINE L2 -21 3251 3151 381 22 0 0 chr15 16548363 16548409 -69147345 + (TG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr15 16549283 16549305 -69146449 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2403 89 0 3 chr15 16549318 16549620 -69146134 + AluSx SINE Alu 1 301 -11 349 295 34 40 chr15 16549635 16549784 -69145970 - MIR3 SINE MIR -26 182 35 538 139 9 61 chr15 16550714 16550758 -69144996 + MLT1F LTR MaLR 434 479 -63 2478 77 0 10 chr15 16550758 16551070 -69144684 - AluSg SINE Alu -1 309 1 538 139 9 61 chr15 16551070 16551140 -69144614 + MLT1F LTR MaLR 479 542 0 187 385 108 0 chr15 16551261 16551409 -69144345 - L2 LINE L2 -655 2659 2496 1045 241 25 4 chr15 16551435 16551671 -69144083 - MIR SINE MIR -2 260 20 328 299 31 0 chr15 16552136 16552233 -69143521 + MIR3 SINE MIR 98 197 -11 318 333 0 10 chr15 16552620 16552719 -69143035 - MIR SINE MIR -66 142 45 834 190 62 22 chr15 16555077 16555256 -69140498 - MER91A DNA MER1_type 0 196 11 309 68 0 0 chr15 16557470 16557514 -69138240 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 206 0 0 chr15 16558858 16558926 -69136828 + MER5A DNA MER1_type 4 71 -118 281 263 25 25 chr15 16558986 16559066 -69136688 - MIR SINE MIR -172 90 11 342 322 20 20 chr15 16559624 16559770 -69135984 + MER5B DNA MER1_type 1 146 -32 426 204 95 7 chr15 16559802 16559939 -69135815 - L1ME4a LINE L1 -6 6115 5967 216 0 0 0 chr15 16561191 16561215 -69134539 + (T)n Simple_repeat Simple_repeat 1 24 0 241 310 150 14 chr15 16561517 16561730 -69134024 - MIR SINE MIR -20 242 1 333 291 85 7 chr15 16562612 16562753 -69133001 + MIR SINE MIR 60 211 -51 2327 101 7 0 chr15 16564534 16564840 -69130914 + AluSp SINE Alu 1 308 -5 310 293 14 0 chr15 16564840 16564937 -69130817 - MIR SINE MIR -85 123 19 445 284 130 0 chr15 16566337 16566499 -69129255 - MIR SINE MIR -44 218 36 2345 76 41 0 chr15 16567187 16567477 -69128277 + AluSx SINE Alu 4 305 -7 546 16 0 0 chr15 16571555 16571618 -69124136 + (CA)n Simple_repeat Simple_repeat 2 64 0 384 22 0 0 chr15 16572595 16572640 -69123114 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr15 16573281 16573313 -69122441 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr15 16573800 16573830 -69121924 + GC_rich Low_complexity Low_complexity 1 30 0 229 188 29 29 chr15 16573835 16573904 -69121850 + G-rich Low_complexity Low_complexity 4 72 0 334 310 186 0 chr15 16574685 16574798 -69120956 - L2 LINE L2 -13 3259 3126 2026 104 11 0 chr15 16574948 16575250 -69120504 + AluSx SINE Alu 13 317 0 1934 157 0 20 chr15 16576328 16576633 -69119121 - AluJo SINE Alu -13 299 1 543 239 0 0 chr15 16577958 16578125 -69117629 + (TG)n Simple_repeat Simple_repeat 1 167 0 709 149 0 101 chr15 16578643 16578791 -69116963 - FLAM_A SINE Alu 0 133 1 293 281 0 0 chr15 16579416 16579480 -69116274 - L2 LINE L2 -9 3263 3200 1611 194 32 26 chr15 16579759 16580069 -69115685 + AluJo SINE Alu 1 312 0 272 242 0 16 chr15 16580072 16580134 -69115620 + MIR SINE MIR 16 76 -132 2402 90 3 7 chr15 16580239 16580549 -69115205 + AluSp SINE Alu 1 309 -4 298 300 100 15 chr15 16580608 16580738 -69115016 - MIR SINE MIR -3 259 119 2131 126 3 10 chr15 16581505 16581806 -69113948 - AluSx SINE Alu -13 299 1 28 0 0 0 chr15 16582607 16582635 -69113119 + AT_rich Low_complexity Low_complexity 1 28 0 2348 100 0 0 chr15 16582637 16582937 -69112817 + AluSx SINE Alu 1 300 -12 2286 131 0 0 chr15 16583827 16584133 -69111621 + AluSx SINE Alu 1 306 -6 408 282 73 28 chr15 16584135 16584383 -69111371 + MIR SINE MIR 2 260 -2 973 165 0 40 chr15 16584430 16584631 -69111123 + AluJb SINE Alu 136 312 0 2219 103 7 0 chr15 16584721 16585011 -69110743 + AluSg SINE Alu 1 292 -18 1999 168 12 0 chr15 16585040 16585379 -69110375 - MER2 DNA MER2_type 0 344 2 259 312 0 32 chr15 16585387 16585480 -69110274 + MIR SINE MIR 166 255 -7 953 137 6 57 chr15 16585531 16585668 -69110086 + MER5A DNA MER1_type 2 144 -45 429 20 0 0 chr15 16585668 16585718 -69110036 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1870 171 0 0 chr15 16585718 16586000 -69109754 - AluJb SINE Alu -30 282 1 953 137 6 57 chr15 16586000 16586039 -69109715 + MER5A DNA MER1_type 142 165 -24 635 204 41 70 chr15 16586039 16586102 -69109652 + MER5B DNA MER1_type 1 64 -114 2126 155 0 0 chr15 16586102 16586406 -69109348 + AluSx SINE Alu 1 304 -8 635 204 41 70 chr15 16586406 16586514 -69109240 + MER5B DNA MER1_type 64 167 -11 185 275 38 25 chr15 16587326 16587406 -69108348 + MIR3 SINE MIR 82 162 -46 * 198 312 39 13 chr15 16587387 16587464 -69108290 + MIR SINE MIR 178 256 -6 189 0 0 0 chr15 16588268 16588289 -69107465 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 1108 98 0 26 chr15 16588531 16588547 -69107207 - AluJb SINE Alu -163 149 134 2377 84 0 0 chr15 16588547 16588846 -69106908 - AluY SINE Alu -12 299 1 1108 98 0 26 chr15 16588846 16588982 -69106772 - AluJb SINE Alu -178 134 1 761 210 11 28 chr15 16589267 16589443 -69106311 - MER20 DNA MER1_type -1 218 46 445 272 170 0 chr15 16589498 16589645 -69106109 + MER5A DNA MER1_type 16 187 -2 247 244 89 0 chr15 16589721 16589811 -69105943 - MER20B DNA MER1_type -17 202 101 1599 141 99 46 chr15 16590362 16590926 -69104828 - SATR1 Satellite Satellite -138 594 1 299 212 5 58 chr15 16591028 16591217 -69104537 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2327 189 101 7 chr15 16591228 16595408 -69100346 - SATR1 Satellite Satellite -1 4573 1 207 235 13 46 chr15 16595491 16595644 -69100110 + (TTA)n Simple_repeat Simple_repeat 1 148 0 319 222 0 72 chr15 16595661 16595855 -69099899 + (TTA)n Simple_repeat Simple_repeat 1 180 0 212 252 7 43 chr15 16595897 16596036 -69099718 + (TTA)n Simple_repeat Simple_repeat 3 136 0 1926 216 102 13 chr15 16596036 16597698 -69098056 + SATR1 Satellite Satellite 1 1809 0 1930 192 105 5 chr15 16597730 16598746 -69097008 + SATR1 Satellite Satellite 1 1118 -96 307 172 35 0 chr15 16598762 16598820 -69096934 - SATR1 Satellite Satellite -269 201 142 239 71 29 86 chr15 16601075 16601145 -69094609 + (CAGGG)n Simple_repeat Simple_repeat 1 66 0 442 145 21 118 chr15 16601221 16601407 -69094347 + (CAGGG)n Simple_repeat Simple_repeat 1 168 0 348 112 35 88 chr15 16601419 16601589 -69094165 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 773 151 0 43 chr15 16602627 16602766 -69092988 + FLAM_C SINE Alu 1 133 0 1161 165 15 0 chr15 16603026 16603226 -69092528 + MLT1B LTR MaLR 186 388 -2 379 278 9 0 chr15 16603245 16603360 -69092394 + MIR SINE MIR 145 260 -2 333 232 49 0 chr15 16603433 16603515 -69092239 + L2 LINE L2 2248 2333 -981 14398 19 1 0 chr15 16603515 16605265 -69090489 - L1PA4 LINE L1 -814 5332 3581 6391 40 0 1 chr15 16605265 16606053 -69089701 + L1PA4 LINE L1 5348 6145 -10 1927 47 0 4 chr15 16605817 16606053 -69089701 + L1PA4 LINE L1 5911 6175 0 238 33 0 0 chr15 16606053 16606083 -69089671 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 198 0 0 0 chr15 16606096 16606118 -69089636 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2648 47 0 0 chr15 16606132 16606431 -69089323 + AluY SINE Alu 1 299 -12 1029 213 92 25 chr15 16606453 16606790 -69088964 + MSTD LTR MaLR 1 396 0 1621 258 94 2 chr15 16606796 16607276 -69088478 + L2 LINE L2 2386 2909 -405 284 269 109 19 chr15 16607284 16607440 -69088314 + L1MCc LINE L1 17 186 -6237 1347 271 89 40 chr15 16608001 16608282 -69087472 + L1MCc LINE L1 1269 1535 -5587 566 39 0 13 chr15 16608282 16608360 -69087394 + (TA)n Simple_repeat Simple_repeat 2 78 0 1347 271 89 40 chr15 16608360 16608639 -69087115 + L1MCc LINE L1 1535 1799 -5323 2319 107 0 0 chr15 16608639 16608937 -69086817 - AluSx SINE Alu -13 299 2 1347 271 89 40 chr15 16608937 16609292 -69086462 + L1MCc LINE L1 1799 2444 -4678 636 202 9 0 chr15 16609294 16609580 -69086174 + FLAM_A SINE Alu 12 298 0 1172 246 65 26 chr15 16609583 16609965 -69085789 + L1MCc LINE L1 2438 2834 -4288 1716 175 0 11 chr15 16609970 16610255 -69085499 + AluJo SINE Alu 1 282 -30 282 56 0 0 chr15 16610260 16610296 -69085458 + (CA)n Simple_repeat Simple_repeat 1 36 0 1872 158 3 13 chr15 16610344 16610642 -69085112 + AluJb SINE Alu 1 295 -17 2978 88 21 75 chr15 16611497 16611965 -69083789 - MLT2A1 LTR ERVL 0 444 2 205 286 104 0 chr15 16611970 16612047 -69083707 - MIR3 SINE MIR 0 208 124 378 271 15 53 chr15 16612435 16612568 -69083186 - MER94 DNA DNA -6 128 1 1612 220 54 41 chr15 16613256 16613647 -69082107 + MSTD LTR MaLR 1 396 0 557 229 19 38 chr15 16613984 16614141 -69081613 + MLT1J LTR MaLR 356 509 -2 922 251 182 24 chr15 16614520 16614970 -69080784 + LTR33 LTR ERVL 1 521 0 623 256 108 31 chr15 16614975 16615359 -69080395 - MLT1L LTR MaLR 0 615 109 328 291 44 89 chr15 16615805 16615963 -69079791 + L2 LINE L2 3101 3251 -21 1627 194 0 7 chr15 16615964 16616274 -69079480 + AluJo SINE Alu 1 308 -4 532 245 99 0 chr15 16616329 16616480 -69079274 + MIR3 SINE MIR 36 201 -7 25 31 0 0 chr15 16617435 16617467 -69078287 + AT_rich Low_complexity Low_complexity 1 32 0 1819 176 3 0 chr15 16617590 16617892 -69077862 - AluJb SINE Alu -9 303 1 1892 103 0 109 chr15 16617896 16618095 -69077659 - AluSx SINE Alu -10 302 83 2290 99 3 0 chr15 16618095 16618398 -69077356 - AluSp SINE Alu -9 304 1 2343 94 0 0 chr15 16618400 16618709 -69077045 - AluY SINE Alu -2 309 1 1892 103 0 109 chr15 16618709 16618845 -69076909 - AluSx SINE Alu -230 82 1 216 0 0 0 chr15 16618962 16618986 -69076768 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 784 162 78 0 chr15 16619253 16619395 -69076359 - MER20 DNA MER1_type -1 218 66 432 272 170 0 chr15 16619484 16619631 -69076123 + MER5A DNA MER1_type 16 187 -2 270 230 89 0 chr15 16619707 16619797 -69075957 - MER20B DNA MER1_type -17 202 101 318 336 96 66 chr15 16620544 16620970 -69074784 + L2 LINE L2 2831 3269 -3 2275 148 93 23 chr15 16621464 16621862 -69073892 - MSTB LTR MaLR 0 426 1 2018 109 43 0 chr15 16622120 16622396 -69073358 + AluSx SINE Alu 1 288 -24 2051 91 11 0 chr15 16623596 16623861 -69071893 - AluSx SINE Alu -11 301 34 430 225 185 45 chr15 16624679 16624857 -69070897 + MLT1K LTR MaLR 378 580 -8 741 152 6 76 chr15 16625048 16625206 -69070548 + FRAM SINE Alu 10 156 -20 363 239 70 46 chr15 16625412 16625526 -69070228 - MIR SINE MIR -64 144 33 277 279 23 47 chr15 16626385 16626471 -69069283 + MIR SINE MIR 22 105 -157 1754 259 127 33 chr15 16626794 16627670 -69068084 - L2 LINE L2 -37 3276 2329 182 376 161 0 chr15 16627716 16627809 -69067945 - L2 LINE L2 -8 3264 3157 4820 148 38 24 chr15 16627809 16628181 -69067573 + MER6 DNA MER2_type -7 358 -507 809 144 8 24 chr15 16628181 16628306 -69067448 + FLAM_C SINE Alu 1 123 -10 4820 148 38 24 chr15 16628306 16628767 -69066987 + MER6 DNA MER2_type 358 847 -18 1751 172 7 3 chr15 16629126 16629416 -69066338 - AluJo SINE Alu -20 292 2 929 116 7 43 chr15 16629554 16629692 -69066062 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr15 16629798 16629820 -69065934 + AT_rich Low_complexity Low_complexity 1 22 0 2012 146 0 10 chr15 16630742 16631043 -69064711 - AluSx SINE Alu -14 298 1 1985 198 123 25 chr15 16631063 16631230 -69064524 - L1ME2 LINE L1 -320 5844 5695 2451 63 0 3 chr15 16631230 16631529 -69064225 - AluY SINE Alu -12 299 2 1985 198 123 25 chr15 16631529 16631891 -69063863 - L1ME2 LINE L1 -469 5695 5263 236 69 0 0 chr15 16631892 16631921 -69063833 - LTR56 LTR ERV1 -57 388 360 257 180 40 0 chr15 16631930 16631980 -69063774 - LTR56 LTR ERV1 -59 386 335 1946 199 41 97 chr15 16631980 16632233 -69063521 - L1ME2 LINE L1 -871 5275 5009 2331 67 37 3 chr15 16632233 16632531 -69063223 - AluSq SINE Alu -5 308 1 1946 199 41 97 chr15 16632531 16632976 -69062778 - L1ME2 LINE L1 -1137 5009 4621 2389 100 3 0 chr15 16632976 16633287 -69062467 + AluSp SINE Alu 1 312 -1 1946 199 41 97 chr15 16633287 16633350 -69062404 - L1ME2 LINE L1 -1525 4621 4556 182 337 109 0 chr15 16633408 16633509 -69062245 + L2 LINE L2 2594 2705 -609 675 214 71 0 chr15 16634239 16634393 -69061361 - MIR SINE MIR -88 174 10 2065 147 3 0 chr15 16634497 16634803 -69060951 - AluSx SINE Alu -5 307 1 1865 161 0 3 chr15 16635829 16636127 -69059627 - AluJo SINE Alu -15 297 1 1655 188 10 7 chr15 16636158 16636461 -69059293 + AluJb SINE Alu 3 306 -6 280 93 0 47 chr15 16636675 16636718 -69059036 + Alu SINE Alu 2 38 -264 29 47 0 0 chr15 16636802 16636845 -69058909 + AT_rich Low_complexity Low_complexity 1 43 0 248 256 0 25 chr15 16636982 16637142 -69058612 + (TAAA)n Simple_repeat Simple_repeat 2 157 0 2526 144 50 10 chr15 16637186 16637603 -69058151 - Tigger2a DNA MER2_type 0 434 1 340 329 98 31 chr15 16637605 16637830 -69057924 + L3 LINE CR1 387 626 -951 2260 102 3 37 chr15 16637884 16638207 -69057547 + AluSx SINE Alu 1 312 0 260 241 0 17 chr15 16638207 16638265 -69057489 + L3 LINE CR1 1520 1576 -1 320 221 78 30 chr15 16638366 16638607 -69057147 + MER5C DNA MER1_type 12 322 -2 22 80 0 0 chr15 16639233 16639283 -69056471 + AT_rich Low_complexity Low_complexity 1 50 0 2346 84 0 3 chr15 16639574 16639872 -69055882 + AluSc SINE Alu 1 297 -12 414 298 81 10 chr15 16640008 16640206 -69055548 + L1ME LINE L1 5612 5823 -298 642 133 0 20 chr15 16640212 16640310 -69055444 + FRAM SINE Alu 72 167 -9 198 300 0 0 chr15 16640533 16640583 -69055171 + L2 LINE L2 2687 2736 -578 403 292 0 18 chr15 16640718 16640831 -69054923 + L2 LINE L2 2927 3037 -235 1850 146 0 32 chr15 16640839 16641147 -69054607 - AluJo SINE Alu -14 298 1 870 205 99 59 chr15 16641684 16641987 -69053767 - L1ME1 LINE L1 -89 6471 6248 * 2514 196 78 21 chr15 16641982 16642649 -69053105 - L1ME1 LINE L1 -855 5685 4981 3995 215 82 10 chr15 16642674 16643783 -69051971 - L1ME1 LINE L1 -2686 3854 2666 1358 152 46 81 chr15 16643814 16644284 -69051470 - L1MB8 LINE L1 -89 6089 5675 403 132 0 15 chr15 16644307 16644375 -69051379 - HY4 scRNA scRNA 0 93 27 3724 211 83 80 chr15 16644375 16644858 -69050896 - L1ME1 LINE L1 -3867 2673 2193 198 0 0 0 chr15 16644858 16644880 -69050874 + (TA)n Simple_repeat Simple_repeat 2 23 0 3724 211 83 80 chr15 16644880 16645138 -69050616 - L1ME1 LINE L1 -4347 2193 1937 2198 116 0 38 chr15 16645138 16645456 -69050298 - AluSx SINE Alu -6 306 1 3724 211 83 80 chr15 16645456 16645527 -69050227 - L1ME1 LINE L1 -4603 1937 1868 2472 77 3 0 chr15 16645527 16645837 -69049917 - AluY SINE Alu 0 311 1 3724 211 83 80 chr15 16645837 16645983 -69049771 - L1ME1 LINE L1 -4672 1868 1724 2315 91 7 0 chr15 16645983 16646280 -69049474 - AluSp SINE Alu -14 299 1 3724 211 83 80 chr15 16646280 16646811 -69048943 - L1ME1 LINE L1 -4816 1724 1202 2173 131 0 0 chr15 16646811 16647109 -69048645 + AluSx SINE Alu 1 298 -14 3724 211 83 80 chr15 16647109 16647471 -69048283 - L1ME1 LINE L1 -5338 1202 843 786 289 51 55 chr15 16647453 16647927 -69047827 - L1ME1 LINE L1 -5573 957 34 * 836 219 32 0 chr15 16649202 16649357 -69046397 - FRAM SINE Alu -15 161 2 449 56 0 0 chr15 16649368 16649422 -69046332 - L1MC1 LINE L1 -15 6318 6265 35 54 0 0 chr15 16649886 16649942 -69045812 + AT_rich Low_complexity Low_complexity 1 56 0 820 109 47 47 chr15 16650640 16650768 -69044986 + AluJo SINE Alu 1 128 -174 2363 79 0 25 chr15 16651317 16651634 -69044120 - AluY SINE Alu -2 309 1 1021 170 6 0 chr15 16651650 16651809 -69043945 + AluJo SINE Alu 134 293 -19 1879 157 27 0 chr15 16651839 16652138 -69043616 + AluJo SINE Alu 6 312 0 2283 85 11 0 chr15 16652268 16652550 -69043204 - AluSg SINE Alu -25 285 1 2057 148 0 0 chr15 16652785 16653088 -69042666 - AluSx SINE Alu -7 305 3 3124 180 24 12 chr15 16653089 16653684 -69042070 - L1MB8 LINE L1 -269 5909 5308 696 131 28 0 chr15 16653685 16653792 -69041962 - Tigger7 DNA MER2_type 0 2487 2378 * 2663 164 95 44 chr15 16653780 16653954 -69041800 - Tigger7 DNA MER2_type -1910 577 413 1608 191 6 31 chr15 16653954 16654273 -69041481 + AluJo SINE Alu 1 311 -1 2663 164 95 44 chr15 16654273 16654519 -69041235 - Tigger7 DNA MER2_type -2074 413 120 2077 137 0 0 chr15 16654519 16654818 -69040936 - AluSx SINE Alu -13 299 1 2663 164 95 44 chr15 16654818 16654944 -69040810 - Tigger7 DNA MER2_type -2367 120 2 3983 182 20 36 chr15 16654945 16655837 -69039917 - L1MB8 LINE L1 -838 5308 4431 4920 178 43 31 chr15 16655842 16656508 -69039246 - L1MC2 LINE L1 -9 6335 5652 1554 191 7 0 chr15 16656508 16656780 -69038974 - AluJo SINE Alu -38 274 1 4920 178 43 31 chr15 16656780 16657083 -69038671 - L1MC2 LINE L1 -692 5652 5354 1293 123 215 58 chr15 16657103 16657257 -69038497 - AluJb SINE Alu 0 302 174 2057 106 53 0 chr15 16657257 16657541 -69038213 + AluSq SINE Alu 1 299 -14 1293 123 215 58 chr15 16657541 16657646 -69038108 - AluJb SINE Alu -128 174 2 1448 237 22 37 chr15 16657679 16658134 -69037620 - L1MB8 LINE L1 -1717 4429 3982 229 351 14 14 chr15 16658135 16658209 -69037545 - MER5A DNA MER1_type -38 151 78 6702 130 7 4 chr15 16658618 16660065 -69035689 - L1PB1 LINE L1 0 6151 4704 270 158 0 3 chr15 16661655 16661755 -69033999 + AluJb SINE Alu 1 132 -170 831 108 0 54 chr15 16661873 16662002 -69033752 - FLAM_C SINE Alu -15 128 7 251 337 27 48 chr15 16662219 16662406 -69033348 + L2 LINE L2 465 647 -2667 712 343 73 25 chr15 16662412 16662442 -69033312 + L2 LINE L2 2782 2809 -504 798 175 32 0 chr15 16662442 16662568 -69033186 + FLAM_A SINE Alu 1 130 -3 712 343 73 25 chr15 16662568 16663019 -69032735 + L2 LINE L2 2809 3290 -23 965 214 117 53 chr15 16665031 16665288 -69030466 + L1MC5 LINE L1 7300 7539 -422 2440 64 0 22 chr15 16665288 16665599 -69030155 - AluY SINE Alu -7 304 1 965 214 117 53 chr15 16665599 16665794 -69029960 + L1MC5 LINE L1 7539 7781 -180 4584 143 43 5 chr15 16666424 16667185 -69028569 + L1MB7 LINE L1 5376 6165 -19 468 188 161 0 chr15 16667651 16667763 -69027991 - L1ME3 LINE L1 -8 6154 6025 213 94 0 0 chr15 16668235 16668267 -69027487 + (TA)n Simple_repeat Simple_repeat 2 33 0 1950 145 3 13 chr15 16668267 16668570 -69027184 - AluJb SINE Alu -12 300 1 2412 80 3 0 chr15 16668575 16668877 -69026877 - AluSq SINE Alu -10 303 1 563 311 70 11 chr15 16668962 16669235 -69026519 + L1ME LINE L1 5460 5748 -373 286 192 0 0 chr15 16670166 16670218 -69025536 - MIR SINE MIR -12 250 199 2320 98 0 0 chr15 16670444 16670740 -69025014 - AluSx SINE Alu -16 296 1 582 196 0 10 chr15 16670953 16671055 -69024699 + AluS SINE Alu 2 102 -210 859 168 0 0 chr15 16671387 16671524 -69024230 + FLAM_C SINE Alu 2 138 -5 328 49 0 0 chr15 16671560 16671601 -69024153 - FRAM/FAM SINE Alu -101 74 34 990 137 0 0 chr15 16671635 16671781 -69023973 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 16671791 16671876 -69023878 + AT_rich Low_complexity Low_complexity 1 85 0 2250 125 0 0 chr15 16671887 16672184 -69023570 + AluSq SINE Alu 1 297 -16 1647 134 97 0 chr15 16672471 16672740 -69023014 - AluJo SINE Alu -17 295 1 2352 45 0 17 chr15 16672770 16673062 -69022692 + AluY SINE Alu 1 287 -24 639 261 30 49 chr15 16673934 16674137 -69021617 - HAL1 LINE L1 -542 1965 1767 1544 162 40 11 chr15 16674140 16674418 -69021336 - AluJo SINE Alu -8 304 19 1070 240 107 55 chr15 16674441 16675449 -69020305 - HAL1 LINE L1 -1009 1498 311 2046 119 0 38 chr15 16675449 16675767 -69019987 - AluSq SINE Alu -7 306 1 1070 240 107 55 chr15 16675767 16676088 -69019666 - HAL1 LINE L1 -2196 311 8 242 267 95 19 chr15 16676480 16676585 -69019169 - L1MC5 LINE L1 -56 7905 7793 295 250 29 29 chr15 16676712 16676816 -69018938 - MIR SINE MIR -12 250 147 2066 133 0 10 chr15 16677168 16677470 -69018284 - AluJb SINE Alu -13 299 1 461 235 39 60 chr15 16678370 16678561 -69017193 - MER20B DNA MER1_type 0 219 33 2179 109 7 14 chr15 16678820 16679114 -69016640 + AluSp SINE Alu 1 292 -21 2406 80 0 0 chr15 16679120 16679421 -69016333 + AluY SINE Alu 1 301 -10 944 143 0 0 chr15 16679430 16679563 -69016191 + FLAM_C SINE Alu 1 133 0 245 304 25 13 chr15 16679628 16679707 -69016047 - MIR SINE MIR -76 132 53 201 238 48 12 chr15 16679768 16679791 -69015963 + (CATATA)n Simple_repeat Simple_repeat 3 24 -65 1779 172 3 7 chr15 16679791 16680087 -69015667 + AluJb SINE Alu 3 297 -15 201 238 48 12 chr15 16680087 16680147 -69015607 + (CATATA)n Simple_repeat Simple_repeat 24 89 0 275 0 0 28 chr15 16680169 16680205 -69015549 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 16680205 16680226 -69015528 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr15 16680518 16680568 -69015186 + AT_rich Low_complexity Low_complexity 1 50 0 373 243 198 40 chr15 16681501 16681678 -69014076 + MIR SINE MIR 26 230 -32 2418 89 0 0 chr15 16682538 16682842 -69012912 - AluSg SINE Alu -6 304 1 689 107 48 0 chr15 16683072 16683175 -69012579 + AluSq/x SINE Alu 1 108 -205 1046 216 50 53 chr15 16683930 16684231 -69011523 - AluSq SINE Alu -1 302 3 633 148 123 33 chr15 16684260 16684382 -69011372 + FLAM_A SINE Alu 1 133 0 4936 177 43 31 chr15 16684406 16684709 -69011045 + L1MC2 LINE L1 5354 5652 -692 1554 191 7 0 chr15 16684709 16684981 -69010773 + AluJo SINE Alu 1 274 -38 4936 177 43 31 chr15 16684981 16685647 -69010107 + L1MC2 LINE L1 5652 6335 -9 3983 182 20 36 chr15 16685652 16686544 -69009210 + L1MB8 LINE L1 4431 5308 -838 2663 164 95 44 chr15 16686545 16686671 -69009083 + Tigger7 DNA MER2_type 2 120 -2367 2077 137 0 0 chr15 16686671 16686970 -69008784 + AluSx SINE Alu 1 299 -13 2663 164 95 44 chr15 16686970 16687216 -69008538 + Tigger7 DNA MER2_type 120 413 -2074 1608 191 6 31 chr15 16687216 16687535 -69008219 - AluJo SINE Alu -1 311 1 2663 164 95 44 chr15 16687535 16687709 -69008045 + Tigger7 DNA MER2_type 413 577 -1910 696 131 28 0 chr15 16687697 16687804 -69007950 + Tigger7 DNA MER2_type 2382 2491 0 * 3866 179 26 38 chr15 16687805 16688401 -69007353 + L1MB8 LINE L1 5308 5893 -285 2004 148 0 3 chr15 16688401 16688712 -69007042 + AluSx SINE Alu 3 312 0 3866 179 26 38 chr15 16688712 16688936 -69006818 + L1MB8 LINE L1 5893 6118 -60 1050 138 0 25 chr15 16688979 16689139 -69006615 + AluSg SINE Alu 1 156 -154 316 50 0 0 chr15 16689150 16689190 -69006564 - FRAM/FAM SINE Alu -100 75 36 990 137 0 0 chr15 16689226 16689372 -69006382 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 16689382 16689467 -69006287 + AT_rich Low_complexity Low_complexity 1 85 0 2250 125 0 0 chr15 16689478 16689775 -69005979 + AluSq SINE Alu 1 297 -16 1875 128 14 21 chr15 16690341 16690629 -69005125 + AluSx SINE Alu 5 290 -22 1474 147 120 4 chr15 16692309 16692568 -69003186 - AluJb SINE Alu -23 289 1 1583 177 10 32 chr15 16692972 16693282 -69002472 + AluJo SINE Alu 1 303 -9 2328 105 7 0 chr15 16694733 16695038 -69000716 + AluSq SINE Alu 1 307 -6 520 256 146 7 chr15 16695079 16695216 -69000538 - MER91A DNA MER1_type -6 190 35 736 198 186 11 chr15 16695495 16695672 -69000082 - AluJo SINE Alu -18 294 87 612 260 55 109 chr15 16695683 16696268 -68999486 + L2 LINE L2 2726 3270 -43 832 137 0 0 chr15 16698178 16698295 -68997459 - AluJb SINE Alu -195 117 1 2282 106 7 0 chr15 16698792 16699093 -68996661 - AluSp SINE Alu -10 303 1 450 257 197 0 chr15 16699233 16699385 -68996369 + MIR SINE MIR 7 188 -74 1875 131 20 67 chr15 16699993 16700101 -68995653 + MER7A DNA MER2_type 10 121 -2917 1677 170 17 14 chr15 16700101 16700395 -68995359 - AluJb SINE Alu -9 303 9 1875 131 20 67 chr15 16700395 16700629 -68995125 + MER7A DNA MER2_type 121 334 -12 2850 10 0 0 chr15 16701298 16701606 -68994148 - AluYa5 SINE Alu -3 308 1 684 250 30 29 chr15 16701772 16702177 -68993577 - MLT1L LTR MaLR -8 607 111 855 200 0 0 chr15 16702272 16702417 -68993337 + FRAM SINE Alu 1 145 -31 431 260 89 0 chr15 16702517 16702640 -68993114 + MIR SINE MIR 30 163 -99 * 445 298 46 0 chr15 16702626 16702757 -68992997 + L2 LINE L2 3177 3313 0 283 289 0 0 chr15 16702759 16702835 -68992919 + MIR SINE MIR 173 248 -14 1734 147 157 10 chr15 16702882 16703175 -68992579 - MER1B DNA MER1_type -1 336 1 384 284 90 26 chr15 16703896 16704051 -68991703 + MIR SINE MIR 63 227 -35 581 172 250 23 chr15 16704181 16704309 -68991445 - AluJo/FRAM SINE Alu -9 293 137 1497 132 180 0 chr15 16704312 16704562 -68991192 - AluJo SINE Alu -7 295 1 405 283 67 28 chr15 16705858 16706038 -68989716 + MIR3 SINE MIR 16 202 -6 281 197 15 30 chr15 16706076 16706142 -68989612 - L2 LINE L2 0 3272 3208 252 213 0 0 chr15 16706447 16706494 -68989260 + MLT1K LTR MaLR 27 73 -515 2126 96 11 0 chr15 16707197 16707505 -68988249 - AluSx SINE Alu 0 311 1 308 332 132 44 chr15 16707544 16707794 -68987960 - L1ME4a LINE L1 -1 6120 5849 212 185 19 37 chr15 16707795 16707849 -68987905 + (CATA)n Simple_repeat Simple_repeat 1 53 0 796 259 23 59 chr15 16707861 16708166 -68987588 - L1ME4a LINE L1 -1984 5824 5531 2271 92 3 0 chr15 16708388 16708681 -68987073 - AluSg SINE Alu -16 294 1 558 297 122 9 chr15 16708827 16709049 -68986705 - MIR SINE MIR -1 261 15 234 128 0 0 chr15 16711455 16711494 -68984260 + (T)n Simple_repeat Simple_repeat 1 39 0 211 186 23 0 chr15 16711916 16711959 -68983795 - L2 LINE L2 -4 3309 3266 196 315 87 11 chr15 16713784 16713876 -68981878 - L2 LINE L2 -32 3240 3142 738 271 45 14 chr15 16714219 16714440 -68981314 + MIR SINE MIR 34 261 -1 252 250 120 0 chr15 16714447 16714539 -68981215 - L2 LINE L2 -150 3122 3020 980 195 5 10 chr15 16714952 16715157 -68980597 + AluSc SINE Alu 1 204 -105 1346 167 0 0 chr15 16716091 16716313 -68979441 - AluSq SINE Alu -91 222 1 418 297 30 30 chr15 16717268 16717433 -68978321 - MIR3 SINE MIR -31 177 13 186 267 13 53 chr15 16718037 16718112 -68977642 - L2 LINE L2 -3011 303 232 184 266 85 32 chr15 16719634 16719728 -68976026 - MIR SINE MIR -69 193 95 184 351 13 13 chr15 16720487 16720564 -68975190 + MIR3 SINE MIR 8 84 -124 1885 161 33 87 chr15 16720569 16720961 -68974793 - MLT1A1 LTR MaLR -3 362 1 641 275 5 26 chr15 16720962 16721151 -68974603 + MIR SINE MIR 78 262 0 350 357 147 0 chr15 16721969 16722112 -68973642 - L3 LINE CR1 -2 1575 1412 26 0 0 0 chr15 16724477 16724503 -68971251 + GC_rich Low_complexity Low_complexity 1 26 0 424 280 88 66 chr15 16725683 16725865 -68969889 + MIR SINE MIR 5 190 -72 299 243 14 14 chr15 16726209 16726283 -68969471 + MIR SINE MIR 46 119 -89 488 240 186 15 chr15 16726288 16726492 -68969262 + MIR SINE MIR 9 247 -15 230 354 110 0 chr15 16727292 16727456 -68968298 + L3 LINE CR1 1309 1490 -87 893 203 0 23 chr15 16727674 16727851 -68967903 + AluJo SINE Alu 120 292 -20 396 278 120 69 chr15 16728227 16728443 -68967311 + MIR SINE MIR 3 229 -33 583 323 85 14 chr15 16728927 16729280 -68966474 - MARNA DNA Mariner -150 436 59 775 246 139 0 chr15 16729950 16730165 -68965589 + MIR SINE MIR 8 252 -10 556 84 0 0 chr15 16731122 16731193 -68964561 + Alu SINE Alu 3 73 -245 2363 94 0 3 chr15 16732157 16732464 -68963290 + AluSx SINE Alu 1 306 -6 249 312 80 0 chr15 16732464 16732602 -68963152 - L1ME4a LINE L1 0 6121 5973 1343 231 65 97 chr15 16732872 16733544 -68962210 - L1M4 LINE L1 -1110 5036 4343 2422 64 0 0 chr15 16733544 16733841 -68961913 - AluY SINE Alu -14 297 1 1343 231 65 97 chr15 16733841 16733912 -68961842 - L1M4 LINE L1 -1803 4343 4322 2206 88 0 3 chr15 16733912 16734196 -68961558 + AluSc SINE Alu 3 285 -24 1343 231 65 97 chr15 16734196 16734303 -68961451 - L1M4 LINE L1 -1824 4322 4213 1925 109 0 11 chr15 16734897 16735197 -68960557 + AluSx SINE Alu 23 312 0 2058 129 0 7 chr15 16736268 16736570 -68959184 - AluSx SINE Alu -12 300 1 339 301 34 23 chr15 16736905 16737081 -68958673 - L1M4 LINE L1 -2369 3777 3600 331 175 48 97 chr15 16737853 16737956 -68957798 - MER53 DNA DNA 0 189 92 190 227 107 13 chr15 16739614 16739689 -68956065 - MIR SINE MIR -116 146 65 2285 66 0 20 chr15 16740029 16740332 -68955422 + AluY SINE Alu 1 297 -14 644 239 165 0 chr15 16740913 16741101 -68954653 - MER20 DNA MER1_type 0 219 1 242 221 163 23 chr15 16741598 16741684 -68954070 + MIR SINE MIR 163 260 -2 2055 115 0 7 chr15 16741687 16741974 -68953780 - AluSx SINE Alu -27 285 1 23 0 0 0 chr15 16741977 16742000 -68953754 + AT_rich Low_complexity Low_complexity 1 23 0 253 280 174 0 chr15 16742981 16743113 -68952641 + MER5A DNA MER1_type 1 155 -34 276 167 175 63 chr15 16743125 16743251 -68952503 - MIR3 SINE MIR -60 148 9 2308 92 0 3 chr15 16747934 16748237 -68947517 - AluSg SINE Alu -7 303 2 328 157 86 70 chr15 16748252 16748377 -68947377 - MIR SINE MIR -63 145 62 360 0 0 0 chr15 16749403 16749443 -68946311 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr15 16754694 16754725 -68941029 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 16755246 16755269 -68940485 + GC_rich Low_complexity Low_complexity 1 23 0 2504 52 7 0 chr15 16757220 16757525 -68938229 + AluSc SINE Alu 1 307 -2 200 111 28 0 chr15 16758129 16758165 -68937589 + T-rich Low_complexity Low_complexity 2 38 0 236 253 116 20 chr15 16759202 16759312 -68936442 - MIR SINE MIR -59 149 42 241 254 262 0 chr15 16760980 16761102 -68934652 - MIR3 SINE MIR -40 168 15 493 284 68 35 chr15 16762027 16762270 -68933484 + MIR SINE MIR 7 258 -4 378 0 0 0 chr15 16762588 16762630 -68933124 + (GA)n Simple_repeat Simple_repeat 2 43 0 270 0 0 0 chr15 16762629 16762659 -68933095 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 207 259 9 43 chr15 16763991 16764107 -68931647 + (CCGCG)n Simple_repeat Simple_repeat 1 112 0 508 265 139 5 chr15 16765164 16765365 -68930389 + MIR SINE MIR 27 259 -3 258 81 0 0 chr15 16769230 16769267 -68926487 + (TCC)n Simple_repeat Simple_repeat 1 37 0 593 275 100 15 chr15 16769846 16770046 -68925708 + L2 LINE L2 3027 3243 -29 183 394 24 16 chr15 16772034 16772161 -68923593 + L3 LINE CR1 649 776 -801 389 203 41 16 chr15 16772230 16772353 -68923401 + L1MB7 LINE L1 2424 2549 -3597 * 660 157 48 0 chr15 16772345 16772492 -68923262 + L1MB7 LINE L1 5100 5253 -893 2604 188 74 11 chr15 16772498 16772724 -68923030 + L1MB7 LINE L1 5297 5507 -677 2088 90 0 0 chr15 16772724 16772992 -68922762 + AluSx SINE Alu 32 299 -13 2604 188 74 11 chr15 16772992 16773415 -68922339 + L1MB7 LINE L1 5507 5987 -197 386 288 150 0 chr15 16773926 16774079 -68921675 + MER91A DNA MER1_type 21 196 0 22 0 0 0 chr15 16774090 16774112 -68921642 + AT_rich Low_complexity Low_complexity 1 22 0 211 337 41 10 chr15 16774127 16774225 -68921529 - L3 LINE CR1 -195 1382 1282 261 83 0 0 chr15 16777435 16777471 -68918283 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1524 62 5 0 chr15 16777839 16778034 -68917720 - L1PA8 LINE L1 0 6172 5977 189 74 0 0 chr15 16780649 16780676 -68915078 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 2318 52 7 0 chr15 16781095 16781381 -68914373 + AluY SINE Alu 1 288 -23 26 30 0 0 chr15 16781524 16781557 -68914197 + AT_rich Low_complexity Low_complexity 1 33 0 347 358 20 10 chr15 16781797 16781998 -68913756 - L1ME LINE L1 -462 5659 5457 2266 92 3 0 chr15 16782080 16782384 -68913370 + AluSq SINE Alu 1 305 -8 630 219 118 6 chr15 16783285 16783463 -68912291 + MIR SINE MIR 65 262 0 1424 163 47 47 chr15 16784044 16784344 -68911410 + AluSq SINE Alu 3 302 -1 288 197 0 0 chr15 16784972 16785033 -68910721 + Alu SINE Alu 240 300 0 364 378 70 9 chr15 16785038 16785268 -68910486 + L1M4 LINE L1 5136 5379 -767 2115 89 10 10 chr15 16785272 16785563 -68910191 + AluSg SINE Alu 1 291 -19 1850 151 27 0 chr15 16785687 16785979 -68909775 - AluJo SINE Alu 0 312 13 1009 178 0 22 chr15 16785993 16786178 -68909576 - FRAM SINE Alu 0 176 1 1599 68 0 10 chr15 16786192 16786398 -68909356 + AluY SINE Alu 1 204 -107 217 315 213 0 chr15 16786517 16786644 -68909110 + MIR3 SINE MIR 40 193 -15 736 183 0 29 chr15 16788048 16788185 -68907569 - FLAM_A SINE Alu 0 133 1 980 340 31 3 chr15 16788187 16788546 -68907208 + L3 LINE CR1 636 1004 -573 241 313 45 18 chr15 16788561 16788673 -68907081 - MER5A DNA MER1_type -2 187 73 868 159 8 0 chr15 16788700 16788832 -68906922 - AluJo SINE Alu -169 133 1 207 383 16 55 chr15 16788890 16789073 -68906681 + L3 LINE CR1 1015 1190 -387 2107 121 0 0 chr15 16789136 16789426 -68906328 + AluSx SINE Alu 1 290 -22 803 333 55 19 chr15 16789466 16789886 -68905868 - LTR16A LTR ERVL 0 450 16 1354 314 58 36 chr15 16790208 16791285 -68904469 - HERV16 LTR ERVL -611 5153 4007 1229 133 36 0 chr15 16791285 16791481 -68904273 + AluJb SINE Alu 99 301 -11 1151 332 101 26 chr15 16791651 16791967 -68903787 - HERV16 LTR ERVL -2998 1998 1707 6238 185 42 50 chr15 16791967 16793083 -68902671 + Charlie1a DNA MER1_type 1 1125 -1636 1845 150 7 10 chr15 16793083 16793389 -68902365 + AluJb SINE Alu 2 306 -6 6238 185 42 50 chr15 16793389 16793493 -68902261 + Charlie1a DNA MER1_type 1125 1228 -1533 2280 76 0 0 chr15 16793493 16793770 -68901984 + AluSg SINE Alu 3 279 -31 243 0 0 0 chr15 16793774 16793801 -68901953 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6238 185 42 50 chr15 16793801 16793978 -68901776 + Charlie1a DNA MER1_type 1231 1394 -1367 1607 197 0 14 chr15 16793978 16794268 -68901486 - AluJo SINE Alu -26 286 1 6238 185 42 50 chr15 16794268 16794330 -68901424 + Charlie1a DNA MER1_type 1394 1455 0 1151 332 101 26 chr15 16794330 16794955 -68900799 - HERV16 LTR ERVL -3289 1707 872 564 293 44 36 chr15 16795236 16795485 -68900269 + MIR SINE MIR 1 251 -11 343 378 5 47 chr15 16795494 16795687 -68900067 + L3 LINE CR1 1390 1574 -3 475 305 50 5 chr15 16795886 16796086 -68899668 + L3b LINE CR1 1166 1374 -209 2310 41 6 54 chr15 16796244 16796559 -68899195 - AluY SINE Alu -10 301 2 378 0 0 0 chr15 16796905 16796947 -68898807 + (TG)n Simple_repeat Simple_repeat 2 43 0 189 158 32 32 chr15 16798399 16798494 -68897260 + (CGG)n Simple_repeat Simple_repeat 2 96 0 24 53 0 0 chr15 16798670 16798708 -68897046 + GC_rich Low_complexity Low_complexity 1 38 0 31 58 0 0 chr15 16798896 16798948 -68896806 + GC_rich Low_complexity Low_complexity 1 52 0 185 280 252 9 chr15 16803426 16803533 -68892221 + L2 LINE L2 3171 3303 -10 773 193 42 18 chr15 16804927 16805093 -68890661 + MER5A DNA MER1_type 20 189 0 296 132 0 19 chr15 16806437 16806490 -68889264 - L2 LINE L2 -1 3312 3261 512 65 130 0 chr15 16806540 16806617 -68889137 - 5S rRNA rRNA -34 87 1 565 339 39 0 chr15 16806636 16806816 -68888938 - MIR SINE MIR -74 188 2 213 225 36 108 chr15 16808189 16808254 -68887500 + MER5A DNA MER1_type 9 64 -125 1972 144 7 7 chr15 16808254 16808559 -68887195 + AluJb SINE Alu 1 305 -7 213 225 36 108 chr15 16808559 16808604 -68887150 + MER5A DNA MER1_type 64 111 -78 332 282 109 0 chr15 16811919 16812029 -68883725 + MIR3 SINE MIR 33 154 -54 217 264 14 28 chr15 16812192 16812264 -68883490 + MIR3 SINE MIR 117 187 -21 448 212 44 26 chr15 16813016 16813129 -68882625 + MIR SINE MIR 70 184 -78 7837 115 21 24 chr15 16816447 16817225 -68878529 + Tigger3b DNA MER2_type 1 776 -2252 1820 173 7 0 chr15 16817225 16817526 -68878228 - AluJo SINE Alu -9 303 1 7837 115 21 24 chr15 16817526 16817980 -68877774 + Tigger3b DNA MER2_type 776 1230 -1 284 341 73 17 chr15 16819333 16819512 -68876242 + L2 LINE L2 3079 3267 -5 355 308 24 53 chr15 16819869 16820038 -68875716 - MIR3 SINE MIR -35 173 10 246 287 233 33 chr15 16820528 16820678 -68875076 + MIR SINE MIR 65 244 -18 550 202 28 0 chr15 16822808 16822917 -68872837 - MER81 DNA DNA -1 113 2 324 333 54 30 chr15 16824541 16824709 -68871045 + MIR SINE MIR 20 191 -71 2158 135 0 0 chr15 16824869 16825181 -68870573 + AluSx SINE Alu 1 312 0 192 77 0 0 chr15 16825195 16825221 -68870533 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 251 350 83 17 chr15 16825726 16825846 -68869908 + MIR SINE MIR 125 252 -10 360 0 0 0 chr15 16825960 16826000 -68869754 + (CA)n Simple_repeat Simple_repeat 1 40 0 1494 144 79 40 chr15 16826755 16826861 -68868893 + AluJb SINE Alu 1 101 -211 2221 106 0 0 chr15 16826861 16827154 -68868600 - AluSx SINE Alu -19 293 1 1494 144 79 40 chr15 16827154 16827325 -68868429 + AluJb SINE Alu 101 289 -23 333 0 0 0 chr15 16828228 16828265 -68867489 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 222 0 0 chr15 16829163 16829199 -68866555 - MIR SINE MIR -135 73 38 231 346 15 31 chr15 16831944 16832074 -68863680 + L2 LINE L2 2956 3083 -189 321 105 18 0 chr15 16832672 16832729 -68863025 + L1PA16 LINE L1 6092 6149 -17 234 160 0 0 chr15 16832729 16832779 -68862975 - Tigger3(Golem) DNA MER2_type -487 2542 2493 372 43 0 0 chr15 16833351 16833397 -68862357 + (CCG)n Simple_repeat Simple_repeat 3 48 0 183 80 0 0 chr15 16833450 16833475 -68862279 + (CAG)n Simple_repeat Simple_repeat 1 25 0 455 360 28 6 chr15 16836594 16836772 -68858982 - MIR SINE MIR -22 240 59 262 263 67 115 chr15 16837435 16837644 -68858110 + L2 LINE L2 3023 3221 -51 * 1106 292 48 46 chr15 16837641 16838121 -68857633 - L2 LINE L2 -3 3310 2830 184 301 106 35 chr15 16838138 16838215 -68857539 + MIR SINE MIR 110 199 -63 2268 72 0 29 chr15 16838215 16838522 -68857232 + AluY SINE Alu 1 298 -13 184 301 106 35 chr15 16838522 16838557 -68857197 + MIR SINE MIR 199 230 -32 * 214 235 59 0 chr15 16838543 16838594 -68857160 + L2 LINE L2 3209 3262 -10 737 302 17 0 chr15 16841404 16841639 -68854115 + MIR SINE MIR 15 253 -9 312 171 171 13 chr15 16841659 16841735 -68854019 - MIR3 SINE MIR -111 97 10 25 65 0 0 chr15 16843264 16843310 -68852444 + GC_rich Low_complexity Low_complexity 1 46 0 276 304 54 0 chr15 16846313 16846405 -68849349 - MIR SINE MIR -102 160 64 354 349 58 50 chr15 16846940 16847198 -68848556 - L2 LINE L2 -10 3262 3003 210 254 36 0 chr15 16847189 16847244 -68848510 - MIR3 SINE MIR -3 205 149 * 2120 129 0 0 chr15 16848616 16848919 -68846835 + AluSx SINE Alu 1 303 -9 2410 62 3 0 chr15 16848919 16849210 -68846544 + AluY SINE Alu 1 293 -18 646 62 0 0 chr15 16849404 16849484 -68846270 - AluSg/x SINE Alu -12 297 218 1001 79 0 29 chr15 16849484 16849624 -68846130 - AluY SINE Alu -175 136 1 2307 94 0 0 chr15 16849806 16850103 -68845651 - AluY SINE Alu -14 297 1 454 324 77 45 chr15 16850660 16850996 -68844758 + L2 LINE L2 1171 1517 -1797 591 283 19 15 chr15 16851035 16851240 -68844514 + Charlie2 DNA MER1_type 1 206 -2576 45 45 0 0 chr15 16851433 16851499 -68844255 + AT_rich Low_complexity Low_complexity 1 66 0 1622 171 3 75 chr15 16851512 16851657 -68844097 + AluJo SINE Alu 6 117 -195 2287 103 0 0 chr15 16851657 16851969 -68843785 + AluSx SINE Alu 1 312 0 1622 171 3 75 chr15 16851969 16852145 -68843609 + AluJo SINE Alu 117 304 -8 703 204 27 11 chr15 16852176 16852362 -68843392 + Charlie2a DNA MER1_type 1467 1655 -1207 2302 59 35 0 chr15 16852362 16852650 -68843104 + AluY SINE Alu 1 298 -13 2952 243 77 12 chr15 16852653 16853637 -68842117 + L1MEc LINE L1 15 1062 -5334 699 189 20 0 chr15 16853693 16853841 -68841913 + L1MA10 LINE L1 6180 6330 -4 383 227 21 0 chr15 16853856 16853953 -68841801 + L1MD1 LINE L1 6136 6234 -8 * 422 226 39 0 chr15 16853942 16854097 -68841657 + L1MEc LINE L1 1013 1173 -5223 2374 97 0 0 chr15 16854117 16854428 -68841326 + AluSx SINE Alu 1 311 -1 1913 147 3 3 chr15 16854450 16854749 -68841005 + AluJo SINE Alu 1 299 -13 1033 201 0 22 chr15 16854818 16854997 -68840757 + FAM SINE Alu 1 175 0 1101 280 75 113 chr15 16855083 16855660 -68840094 + L2 LINE L2 1583 2180 -1134 2107 122 10 6 chr15 16855660 16855971 -68839783 - AluSx SINE Alu 0 312 1 534 48 0 0 chr15 16855974 16856037 -68839717 - AluSq/x SINE Alu -180 133 71 1101 280 75 113 chr15 16856037 16856214 -68839540 + L2 LINE L2 2182 2372 -942 2285 88 7 3 chr15 16856275 16856580 -68839174 + AluSx SINE Alu 1 306 -6 1688 150 64 0 chr15 16856606 16856900 -68838854 + AluJo SINE Alu 1 311 0 236 328 67 0 chr15 16856908 16857042 -68838712 + L2 LINE L2 2719 2861 -453 448 307 46 81 chr15 16857071 16857239 -68838515 + L2 LINE L2 2954 3126 -187 1638 176 17 7 chr15 16857239 16857534 -68838220 - AluJb SINE Alu -14 298 1 448 307 46 81 chr15 16857534 16857736 -68838018 + L2 LINE L2 3126 3311 -2 2422 44 0 3 chr15 16859412 16859707 -68836047 + AluY SINE Alu 1 294 -17 386 231 0 13 chr15 16860850 16860928 -68834826 - L2 LINE L2 -1 3271 3195 1480 159 103 11 chr15 16861290 16861561 -68834193 + AluJo SINE Alu 1 296 -16 256 333 35 35 chr15 16862568 16862682 -68833072 + MER5B DNA MER1_type 2 115 -63 2057 149 0 0 chr15 16863046 16863342 -68832412 + AluSx SINE Alu 1 296 -16 3680 96 10 25 chr15 16863405 16863740 -68832014 - MER9 LTR ERVK 0 511 185 2235 79 24 3 chr15 16863740 16864030 -68831724 + AluY SINE Alu 1 296 -15 3680 96 10 25 chr15 16864030 16864213 -68831541 - MER9 LTR ERVK -326 185 1 414 291 55 30 chr15 16864263 16864428 -68831326 - MIR SINE MIR -36 226 58 2270 98 0 16 chr15 16864464 16864769 -68830985 - AluSp SINE Alu -11 302 3 2199 141 0 0 chr15 16865937 16866235 -68829519 - AluSx SINE Alu -14 298 1 23 33 0 0 chr15 16866257 16866287 -68829467 + AT_rich Low_complexity Low_complexity 1 30 0 721 142 115 0 chr15 16866288 16866401 -68829353 - FLAM_A SINE Alu -7 126 1 462 150 128 15 chr15 16867424 16867507 -68828247 - L1MD3 LINE L1 -1 7994 7922 1291 71 35 0 chr15 16867507 16867677 -68828077 - L1PA11 LINE L1 0 6174 5999 462 150 128 15 chr15 16867677 16867726 -68828028 - L1MD3 LINE L1 -73 7922 7847 1436 153 0 14 chr15 16867727 16867942 -68827812 + AluJo SINE Alu 1 212 -100 2163 121 0 0 chr15 16867948 16868230 -68827524 - AluSq SINE Alu -30 283 2 302 194 19 29 chr15 16868239 16868342 -68827412 - L1MD3 LINE L1 -129 7866 7765 2343 93 0 7 chr15 16869823 16870123 -68825631 - AluSc SINE Alu -11 298 1 1645 110 121 43 chr15 16870123 16870404 -68825350 - AluSx SINE Alu -9 303 1 919 123 0 29 chr15 16870404 16870542 -68825212 - AluSq/x SINE Alu -178 134 1 2205 130 0 0 chr15 16870977 16871270 -68824484 + AluSg SINE Alu 1 293 -17 211 269 144 19 chr15 16871284 16871388 -68824366 + MIR SINE MIR 146 262 0 829 137 166 52 chr15 16871715 16871902 -68823852 + L1MB4 LINE L1 5917 6133 -47 2268 85 7 0 chr15 16871902 16872223 -68823531 + AluSq SINE Alu 1 323 0 829 137 166 52 chr15 16872223 16872245 -68823509 + L1MB4 LINE L1 6133 6151 -29 237 167 50 0 chr15 16872352 16872412 -68823342 - L1ME2 LINE L1 -202 5962 5900 1874 134 14 21 chr15 16872412 16872703 -68823051 - AluJo SINE Alu -23 289 1 461 174 0 10 chr15 16872728 16872826 -68822928 + FLAM_C SINE Alu 45 141 -2 1080 179 167 48 chr15 16872826 16873077 -68822677 - AluJo SINE Alu -31 281 1 226 222 125 0 chr15 16873078 16873150 -68822604 - L1ME2 LINE L1 -254 5908 5828 388 209 246 0 chr15 16873207 16873317 -68822437 - L1ME2 LINE L1 -505 5659 5523 1391 186 12 16 chr15 16873353 16873600 -68822154 + AluJo SINE Alu 1 246 -66 968 263 34 3 chr15 16873683 16873976 -68821778 - LTR43 LTR ERV1 -125 477 176 290 130 0 0 chr15 16874175 16874221 -68821533 + AluJo SINE Alu 243 288 -14 2390 171 8 59 chr15 16874225 16874733 -68821021 - L1MD3 LINE L1 -6 7989 7508 2037 134 130 54 chr15 16874733 16875157 -68820597 + LTR12 LTR ERV1 9 464 -250 885 180 69 6 chr15 16875165 16875415 -68820339 - L1MD3 LINE L1 -472 7510 7036 1919 164 13 10 chr15 16875444 16875755 -68819999 - AluSx SINE Alu 0 312 1 1305 126 154 11 chr15 16875774 16876029 -68819725 - L1PA15 LINE L1 0 6156 5874 2403 51 0 0 chr15 16876126 16876401 -68819353 - AluY SINE Alu -34 277 3 671 147 0 20 chr15 16876454 16876556 -68819198 + FLAM_A SINE Alu 20 119 -23 711 249 89 0 chr15 16876608 16876845 -68818909 - MIR SINE MIR -4 258 1 844 221 87 74 chr15 16877067 16877149 -68818605 - L1M4 LINE L1 -2457 3689 3610 2227 52 16 55 chr15 16877149 16877458 -68818296 - AluY SINE Alu -5 306 10 844 221 87 74 chr15 16877458 16877504 -68818250 - L1M4 LINE L1 -2536 3610 3566 2449 70 0 10 chr15 16877504 16877817 -68817937 - AluSg SINE Alu 0 310 1 844 221 87 74 chr15 16877817 16878148 -68817606 - L1M4 LINE L1 -2580 3566 3223 743 204 0 8 chr15 16878153 16878285 -68817469 - FLAM_A SINE Alu -2 131 1 1757 197 3 3 chr15 16878300 16878610 -68817144 - AluJo SINE Alu -2 310 1 250 316 11 21 chr15 16878611 16878706 -68817048 + L2 LINE L2 2302 2395 -919 309 233 89 0 chr15 16878763 16878853 -68816901 + L1MC4a LINE L1 5319 5416 -2392 300 243 45 27 chr15 16878850 16878961 -68816793 + L1MC4a LINE L1 5771 5883 -1925 * 1470 135 38 110 chr15 16879031 16879350 -68816404 + AluJo SINE Alu 6 301 -11 2505 69 0 0 chr15 16879385 16879688 -68816066 + AluY SINE Alu 1 303 -8 476 291 39 22 chr15 16879813 16879995 -68815759 - MIR SINE MIR -31 231 47 773 140 0 0 chr15 16880034 16880141 -68815613 + FLAM_C SINE Alu 2 108 -35 28 0 0 0 chr15 16880168 16880196 -68815558 + AT_rich Low_complexity Low_complexity 1 28 0 779 161 8 0 chr15 16880402 16880526 -68815228 - FLAM_C SINE Alu -17 126 2 530 180 0 0 chr15 16880602 16880691 -68815063 + Tigger5 DNA MER2_type 1 89 -2234 * 1191 142 38 46 chr15 16880687 16880831 -68814923 + Tigger5 DNA MER2_type 2085 2228 -95 2403 99 0 0 chr15 16880831 16881133 -68814621 - AluSp SINE Alu -11 302 1 1191 142 38 46 chr15 16881133 16881228 -68814526 + Tigger5 DNA MER2_type 2228 2322 -1 913 129 8 8 chr15 16882487 16882619 -68813135 + AluJo SINE Alu 1 132 -180 2571 74 3 0 chr15 16882828 16883138 -68812616 - AluSp SINE Alu -2 311 1 349 288 112 50 chr15 16883184 16883462 -68812292 - L2 LINE L2 -374 2940 2646 2307 93 7 0 chr15 16884642 16884933 -68810821 + AluSp SINE Alu 1 293 -20 953 194 0 17 chr15 16885222 16885397 -68810357 + AluJo SINE Alu 131 302 -10 2599 62 3 0 chr15 16885802 16886108 -68809646 - AluY SINE Alu -4 307 1 1156 117 0 6 chr15 16889637 16889830 -68805924 - AluSg/x SINE Alu 0 310 132 2129 100 20 17 chr15 16889831 16890131 -68805623 - AluSq SINE Alu -12 301 1 1946 105 86 0 chr15 16893338 16893605 -68802149 + AluSx SINE Alu 1 290 -22 2267 120 0 13 chr15 16893818 16894126 -68801628 + AluSq SINE Alu 1 304 -9 2335 88 17 0 chr15 16894126 16894421 -68801333 + AluSx SINE Alu 1 300 -12 315 219 98 0 chr15 16894423 16894505 -68801249 + MER44D DNA MER2_type 76 165 -540 1766 154 47 6 chr15 16894607 16894926 -68800828 + MER44D DNA MER2_type 219 605 0 343 136 0 17 chr15 16895699 16895758 -68799996 + Tigger4(Zombi) DNA MER2_type 2673 2730 -1 2150 121 10 10 chr15 16895799 16896106 -68799648 + AluSq SINE Alu 1 307 -6 2154 137 0 0 chr15 16896177 16896476 -68799278 + AluSx SINE Alu 1 299 -13 2330 97 0 0 chr15 16896478 16896766 -68798988 + AluSg1 SINE Alu 1 288 -21 2290 92 3 13 chr15 16896768 16897072 -68798682 + AluSg SINE Alu 1 301 -9 254 284 103 32 chr15 16898488 16898643 -68797111 + MER5A DNA MER1_type 6 171 -18 2625 41 0 0 chr15 16899239 16899531 -68796223 - AluY SINE Alu -19 292 1 2455 106 0 0 chr15 16899536 16899848 -68795906 - AluSx SINE Alu 0 312 1 1599 120 30 86 chr15 16899859 16900187 -68795567 - AluJb SINE Alu 0 311 1 319 281 96 28 chr15 16900220 16900398 -68795356 - HAL1 LINE L1 -33 2474 2285 2272 107 0 7 chr15 16900409 16900708 -68795046 - AluSg SINE Alu -13 297 1 353 328 88 39 chr15 16901353 16901661 -68794093 + L2 LINE L2 2991 3313 0 231 247 205 72 chr15 16901670 16901836 -68793918 + L2 LINE L2 3125 3312 -1 243 0 0 0 chr15 16902389 16902416 -68793338 + (TA)n Simple_repeat Simple_repeat 1 27 0 1400 176 81 15 chr15 16902476 16902737 -68793017 - AluJb SINE Alu 0 312 35 1671 151 51 34 chr15 16902761 16903053 -68792701 - AluJb SINE Alu -15 297 1 816 292 24 7 chr15 16903053 16903204 -68792550 - L1ME3A LINE L1 -316 5854 5707 2382 101 3 0 chr15 16903204 16903511 -68792243 + AluSq SINE Alu 1 308 -5 816 292 24 7 chr15 16903511 16903650 -68792104 - L1ME3A LINE L1 -463 5707 5559 227 281 22 22 chr15 16903813 16903902 -68791852 - L2 LINE L2 -9 3263 3175 2462 84 0 0 chr15 16904849 16905147 -68790607 + AluSx SINE Alu 2 299 -13 246 214 79 90 chr15 16906463 16906552 -68789202 + L2 LINE L2 3223 3310 -3 258 316 68 45 chr15 16907140 16907273 -68788481 - L2 LINE L2 -3 3269 3134 218 250 335 37 chr15 16907400 16907672 -68788082 - L2 LINE L2 -531 2783 2431 1226 62 37 0 chr15 16908071 16908232 -68787522 - BC200 scRNA scRNA -33 167 1 595 203 65 0 chr15 16908232 16908355 -68787399 + MIR SINE MIR 63 193 -69 2271 85 0 0 chr15 16908362 16908643 -68787111 + AluY SINE Alu 1 281 -30 1506 186 80 0 chr15 16909123 16909398 -68786356 - AluSx SINE Alu -15 297 1 185 182 0 0 chr15 16910182 16910215 -68785539 - MIR SINE MIR -37 225 193 425 237 72 36 chr15 16910370 16910509 -68785245 + MIR SINE MIR 69 212 -50 213 297 16 16 chr15 16910886 16910950 -68784804 - L2 LINE L2 -4 3268 3205 632 312 34 8 chr15 16911189 16911452 -68784302 - MER102b DNA MER1_type 0 341 72 357 325 33 0 chr15 16912154 16912274 -68783480 + MIR SINE MIR 77 200 -62 27 100 0 0 chr15 16918899 16918989 -68776765 + GC_rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr15 16919055 16919086 -68776668 + GC_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr15 16919111 16919137 -68776617 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 16919214 16919237 -68776517 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 16919650 16919674 -68776080 + GC_rich Low_complexity Low_complexity 1 24 0 187 329 68 49 chr15 16921035 16921342 -68774412 + L2 LINE L2 2605 2917 -397 198 0 0 0 chr15 16921460 16921482 -68774272 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chr15 16922607 16922631 -68773123 + (A)n Simple_repeat Simple_repeat 1 24 0 298 359 57 28 chr15 16924598 16924636 -68771118 + L3b LINE CR1 1119 1154 -429 1960 123 32 0 chr15 16924636 16924974 -68770780 + AluSx SINE Alu 1 312 0 298 359 57 28 chr15 16924974 16925183 -68770571 + L3b LINE CR1 1154 1373 -210 186 43 0 0 chr15 16925244 16925267 -68770487 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2288 66 21 3 chr15 16925319 16925607 -68770147 + AluSc SINE Alu 1 293 -16 1266 187 90 4 chr15 16925899 16926166 -68769588 - AluJb SINE Alu -18 294 5 1863 82 114 39 chr15 16926186 16926467 -68769287 - AluSp SINE Alu -11 302 1 462 320 39 0 chr15 16926473 16926626 -68769128 + MIR SINE MIR 104 262 0 2061 126 0 46 chr15 16926869 16927195 -68768559 + AluJo SINE Alu 1 311 -1 214 284 0 74 chr15 16927465 16927546 -68768208 - L2 LINE L2 -86 3227 3153 2300 89 0 19 chr15 16928205 16928521 -68767233 + AluSq SINE Alu 1 310 -3 349 287 183 30 chr15 16928845 16929009 -68766745 - MIR SINE MIR -6 256 68 204 328 205 8 chr15 16930472 16930594 -68765160 - MIR SINE MIR -81 181 36 1617 149 30 98 chr15 16931016 16931351 -68764403 + AluJb SINE Alu 1 312 0 1928 125 0 21 chr15 16933314 16933624 -68762130 - AluY SINE Alu 0 305 2 2110 70 46 20 chr15 16935075 16935377 -68760377 + AluY SINE Alu 1 310 -1 252 135 0 0 chr15 16938332 16938369 -68757385 - MIR SINE MIR -28 234 198 815 212 47 16 chr15 16938380 16938573 -68757181 + MIR SINE MIR 7 205 -57 346 258 172 0 chr15 16938588 16938681 -68757073 - MIR SINE MIR -144 118 10 2158 108 0 7 chr15 16938705 16939002 -68756752 + AluSx SINE Alu 1 295 -17 1338 187 87 14 chr15 16940060 16940349 -68755405 + AluJo SINE Alu 1 310 -2 1684 175 16 25 chr15 16940369 16940684 -68755070 + AluJo SINE Alu 1 312 0 605 257 19 65 chr15 16940684 16940898 -68754856 - MIR SINE MIR -13 249 46 1600 167 51 0 chr15 16945914 16946190 -68749564 + AluJb SINE Alu 9 298 -14 234 361 57 19 chr15 16946476 16946634 -68749120 - MIR SINE MIR -10 252 89 369 313 17 0 chr15 16947269 16947384 -68748370 + MIR SINE MIR 98 214 -48 35 63 0 0 chr15 16948239 16948302 -68747452 + GC_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr15 16948365 16948388 -68747366 + GC_rich Low_complexity Low_complexity 1 23 0 2207 100 16 13 chr15 16950856 16951167 -68744587 - AluSx SINE Alu 0 312 1 186 313 15 15 chr15 16951676 16951743 -68744011 + L2 LINE L2 3033 3099 -173 * 255 327 126 61 chr15 16951737 16951951 -68743803 + MIR SINE MIR 29 256 -6 427 191 95 19 chr15 16952252 16952357 -68743397 - MIR SINE MIR -62 200 88 216 0 0 0 chr15 16953033 16953057 -68742697 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 2190 103 0 26 chr15 16953058 16953368 -68742386 - AluSg SINE Alu -7 303 2 1344 148 36 14 chr15 16953878 16954101 -68741653 - AluJb SINE Alu 0 312 85 389 296 222 0 chr15 16954181 16954357 -68741397 - MIR SINE MIR 0 262 48 2560 150 21 7 chr15 16954383 16954809 -68740945 - L1PA15 LINE L1 -2 6163 5732 926 290 108 8 chr15 16955032 16955422 -68740332 - LTR16B LTR ERVL -2 462 34 2159 120 7 0 chr15 16955652 16955961 -68739793 - AluSx SINE Alu -1 311 1 2354 83 0 13 chr15 16956929 16957242 -68738512 - AluY SINE Alu -2 309 1 4092 175 44 15 chr15 16958702 16959359 -68736395 - L1MB2 LINE L1 0 6171 5534 691 190 0 0 chr15 16959359 16959480 -68736274 - FLAM_A SINE Alu -12 121 1 4092 175 44 15 chr15 16959480 16960341 -68735413 - L1MB2 LINE L1 -637 5534 4604 443 132 26 0 chr15 16960610 16960686 -68735068 - AluJ/FRAM SINE Alu -7 305 228 2269 104 0 0 chr15 16960687 16960994 -68734760 - AluSc SINE Alu -2 307 1 782 180 13 40 chr15 16960994 16961144 -68734610 - AluJo SINE Alu -166 146 1 1765 149 20 14 chr15 16961405 16961700 -68734054 - AluJo SINE Alu -5 307 11 2174 128 0 3 chr15 16961717 16962021 -68733733 - AluSx SINE Alu -9 303 1 1987 97 56 7 chr15 16962030 16962318 -68733436 - AluY SINE Alu -9 302 1 23 33 0 0 chr15 16962494 16962524 -68733230 + AT_rich Low_complexity Low_complexity 1 30 0 259 263 58 83 chr15 16962970 16963126 -68732628 + MER103 DNA DNA 8 159 -7 357 118 0 0 chr15 16963251 16963302 -68732452 - AluSq/x SINE Alu -176 126 76 1474 164 39 4 chr15 16963318 16963598 -68732156 - AluJb SINE Alu -9 303 14 1995 215 104 6 chr15 16963657 16964178 -68731576 + L1M3f LINE L1 1 572 -4756 1335 155 109 21 chr15 16964296 16964580 -68731174 + AluSq SINE Alu 1 309 -4 809 186 51 6 chr15 16964619 16964775 -68730979 + AluSg/x SINE Alu 129 291 -21 2325 61 0 0 chr15 16964780 16965074 -68730680 + AluY SINE Alu 1 294 -17 1071 150 24 29 chr15 16965116 16965323 -68730431 - AluJo SINE Alu -92 220 15 2091 216 83 6 chr15 16965385 16965914 -68729840 + L1M3f LINE L1 3 572 -4756 1403 150 108 21 chr15 16966031 16966318 -68729436 + AluSx SINE Alu 1 312 0 743 169 35 76 chr15 16966351 16966523 -68729231 + AluJb SINE Alu 129 293 -19 226 158 0 0 chr15 16966526 16966564 -68729190 - Alu SINE Alu -178 124 87 1086 107 17 120 chr15 16966564 16966797 -68728957 - AluJo SINE Alu -91 221 13 1605 208 50 98 chr15 16966854 16967310 -68728444 + L1M3f LINE L1 4 475 -4853 255 62 0 83 chr15 16967310 16967358 -68728396 + AluS SINE Alu 49 92 -210 1605 208 50 98 chr15 16967358 16967454 -68728300 + L1M3f LINE L1 475 574 -4754 2173 88 3 0 chr15 16967589 16967884 -68727870 + AluSx SINE Alu 1 296 -16 1594 166 10 10 chr15 16967975 16968282 -68727472 + AluJb SINE Alu 5 311 -1 2179 90 7 0 chr15 16968303 16968604 -68727150 - AluSp SINE Alu -10 303 1 406 263 44 29 chr15 16968819 16968956 -68726798 + MIR SINE MIR 7 145 -117 1733 217 65 65 chr15 16969121 16969641 -68726113 + MLT2B1 LTR ERVL 1 520 0 1361 185 15 11 chr15 16969645 16969785 -68725969 - AluJb SINE Alu -36 276 138 234 0 0 0 chr15 16969785 16969811 -68725943 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1319 203 7 43 chr15 16969819 16969963 -68725791 + AluJb SINE Alu 1 130 -172 486 0 0 0 chr15 16969963 16970017 -68725737 + (TA)n Simple_repeat Simple_repeat 2 55 0 1319 203 7 43 chr15 16970017 16970173 -68725581 + AluJb SINE Alu 130 290 -12 1361 185 15 11 chr15 16970173 16970288 -68725466 - AluJb SINE Alu -180 132 11 1054 313 69 36 chr15 16971410 16971817 -68723937 + L2 LINE L2 1773 2206 -1108 1360 188 12 59 chr15 16971817 16972137 -68723617 - AluJo SINE Alu -7 305 1 1054 313 69 36 chr15 16972137 16972311 -68723443 + L2 LINE L2 2206 2373 -941 1366 148 31 4 chr15 16972336 16972565 -68723189 - MSTB LTR MaLR 0 426 192 2230 98 3 7 chr15 16972565 16972870 -68722884 - AluSc SINE Alu -5 304 1 447 329 115 22 chr15 16972871 16973524 -68722230 + L2 LINE L2 2376 3096 -176 1807 149 3 19 chr15 16973757 16974065 -68721689 + AluJo SINE Alu 1 303 -9 2542 52 0 0 chr15 16974258 16974563 -68721191 + AluY SINE Alu 1 305 -6 2189 93 0 0 chr15 16975233 16975523 -68720231 - AluSx SINE Alu -22 290 1 491 288 60 90 chr15 16975719 16975986 -68719768 + L2 LINE L2 3014 3272 0 650 268 38 24 chr15 16976729 16976829 -68718925 - MIR SINE MIR -3 259 162 1482 190 23 16 chr15 16976829 16977004 -68718750 - AluJo SINE Alu 0 312 133 2211 104 0 13 chr15 16977004 16977312 -68718442 - AluSx SINE Alu -8 304 1 1482 190 23 16 chr15 16977312 16977446 -68718308 - AluJo SINE Alu -179 133 1 650 268 38 24 chr15 16977446 16977554 -68718200 - MIR SINE MIR -100 162 48 234 292 192 0 chr15 16977605 16977735 -68718019 + MIR SINE MIR 37 191 -71 1800 128 42 3 chr15 16977758 16978070 -68717684 + MER33 DNA MER1_type 1 324 0 396 294 85 17 chr15 16978576 16978753 -68717001 - L3 LINE CR1 -770 807 619 607 252 112 60 chr15 16978892 16979136 -68716618 - MLT1J2 LTR MaLR -11 439 187 2233 95 0 0 chr15 16979136 16979432 -68716322 - AluSg SINE Alu -14 296 1 607 252 112 60 chr15 16979432 16979554 -68716200 - MLT1J2 LTR MaLR -263 187 73 2051 119 0 7 chr15 16979633 16979936 -68715818 - AluSx SINE Alu -11 301 1 217 242 48 48 chr15 16980508 16980570 -68715184 + L2 LINE L2 3201 3262 -10 1800 125 0 38 chr15 16980894 16981183 -68714571 + AluJb SINE Alu 14 291 -21 2204 81 7 0 chr15 16981313 16981598 -68714156 + AluSx SINE Alu 3 289 -23 195 235 0 0 chr15 16981598 16981649 -68714105 + (TA)n Simple_repeat Simple_repeat 2 52 0 2000 83 7 4 chr15 16981775 16982081 -68713673 - AluY SINE Alu 0 308 2 22 56 0 0 chr15 16982183 16982219 -68713535 + AT_rich Low_complexity Low_complexity 1 36 0 673 277 78 0 chr15 16982262 16982504 -68713250 - L1ME3A LINE L1 -339 5831 5571 419 294 176 8 chr15 16983017 16983272 -68712482 + L1ME LINE L1 5522 5819 -302 2190 33 40 30 chr15 16983279 16983579 -68712175 + AluY SINE Alu 1 303 -8 2101 76 20 20 chr15 16983583 16983884 -68711870 + AluSg SINE Alu 1 301 -9 1199 214 20 33 chr15 16983999 16984211 -68711543 + MLT1A1 LTR MaLR 1 209 -156 2520 116 19 8 chr15 16984211 16984582 -68711172 + THE1C LTR MaLR 1 375 0 1199 214 20 33 chr15 16984582 16984672 -68711082 + MLT1A1 LTR MaLR 209 299 -66 424 303 49 22 chr15 16984702 16984887 -68710867 - L1ME LINE L1 -404 5717 5528 305 284 126 32 chr15 16985004 16985194 -68710560 + L2 LINE L2 2989 3196 -117 2033 106 17 0 chr15 16985231 16985523 -68710231 + AluSg SINE Alu 1 297 -13 355 200 163 0 chr15 16985644 16985724 -68710030 + L2 LINE L2 3190 3282 -31 1746 136 68 10 chr15 16985869 16986163 -68709591 + AluJb SINE Alu 1 311 -1 392 262 98 8 chr15 16986165 16986287 -68709467 + L1ME4a LINE L1 5769 5901 -220 1365 169 51 0 chr15 16987008 16987262 -68708492 + AluJo SINE Alu 37 303 -9 1298 109 5 0 chr15 16987371 16987557 -68708197 + AluSg/x SINE Alu 120 307 0 1443 154 30 0 chr15 16987557 16987790 -68707964 - L1PB4 LINE L1 -12 6144 5905 243 97 0 0 chr15 16987795 16987826 -68707928 - U6 snRNA snRNA -5 102 72 2015 119 18 181 chr15 16987826 16987864 -68707890 - MSTB LTR MaLR 0 426 383 1658 133 53 14 chr15 16987864 16988149 -68707605 + AluJo SINE Alu 1 296 -16 2015 119 18 181 chr15 16988149 16988562 -68707192 - MSTB LTR MaLR -43 383 62 2123 107 7 3 chr15 16988562 16988862 -68706892 - AluSx SINE Alu -11 301 1 2015 119 18 181 chr15 16988862 16988911 -68706843 - MSTB LTR MaLR -364 62 7 641 75 0 0 chr15 16988912 16988992 -68706762 + AluY SINE Alu 2 81 -230 297 0 0 0 chr15 16989103 16989136 -68706618 + (A)n Simple_repeat Simple_repeat 1 33 0 3072 122 103 60 chr15 16989303 16989902 -68705852 - MER51A LTR ERV1 -9 625 1 2041 112 3 10 chr15 16989997 16990300 -68705454 - AluSx SINE Alu -11 301 1 1893 67 3 131 chr15 16990436 16990750 -68705004 + LTR12 LTR ERV1 1 274 -440 318 291 10 0 chr15 16990762 16990865 -68704889 + LTR30 LTR ERV1 540 643 -79 615 97 86 0 chr15 16990866 16990959 -68704795 + LTR12 LTR ERV1 481 581 -133 228 67 0 0 chr15 16991030 16991060 -68704694 + (CA)n Simple_repeat Simple_repeat 2 31 0 755 152 120 73 chr15 16991146 16991264 -68704490 + MER3 DNA MER1_type 10 121 -88 2195 97 3 0 chr15 16991264 16991572 -68704182 - AluSg1 SINE Alu 0 309 1 1906 142 0 3 chr15 16991574 16991877 -68703877 - AluSx SINE Alu -10 302 1 1683 142 0 0 chr15 16991881 16992135 -68703619 - AluSx SINE Alu -19 293 40 755 152 120 73 chr15 16992135 16992199 -68703555 + MER3 DNA MER1_type 123 209 0 412 292 53 18 chr15 16992547 16992660 -68703094 + L2 LINE L2 3152 3268 -4 2175 81 14 10 chr15 16992854 16993149 -68702605 + AluSx SINE Alu 1 296 -16 218 293 122 0 chr15 16993417 16993499 -68702255 + L2 LINE L2 3156 3247 -25 2021 114 0 3 chr15 16993802 16994099 -68701655 + AluSx SINE Alu 1 296 -16 2418 77 0 0 chr15 16994099 16994409 -68701345 + AluY SINE Alu 1 310 -1 1341 174 39 63 chr15 16994427 16994678 -68701076 + L1 LINE L1 3978 4221 -1925 188 35 35 0 chr15 16994678 16994707 -68701047 + (TA)n Simple_repeat Simple_repeat 1 30 0 1341 174 39 63 chr15 16994707 16994788 -68700966 + L1 LINE L1 4221 4302 -1844 486 68 55 14 chr15 16994927 16995000 -68700754 - U6 snRNA snRNA -31 76 1 461 196 116 14 chr15 16995004 16995142 -68700612 - L1MC4 LINE L1 0 8042 7891 215 59 0 29 chr15 16995740 16995774 -68699980 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 376 226 94 0 chr15 16996228 16996334 -68699420 + MIR SINE MIR 67 182 -80 2747 133 19 23 chr15 16996643 16997073 -68698681 - MSTC LTR MaLR 0 428 1 2010 125 0 0 chr15 16997103 16997392 -68698362 + AluSx SINE Alu 5 293 -19 1164 185 0 34 chr15 16997394 16997632 -68698122 + AluSg/x SINE Alu 74 303 -7 1913 133 31 0 chr15 16997646 16997939 -68697815 - AluSx SINE Alu -10 302 1 663 272 78 19 chr15 16997958 16998215 -68697539 + L1MC4a LINE L1 5622 5893 -1915 250 271 0 29 chr15 16998218 16998288 -68697466 + L2 LINE L2 3244 3311 -2 1025 72 0 0 chr15 16999117 16999242 -68696512 + AluSq/x SINE Alu 11 135 -177 1940 119 7 7 chr15 16999242 16999536 -68696218 + AluSg1 SINE Alu 1 294 -15 1271 171 67 20 chr15 16999542 16999840 -68695914 + AluJo SINE Alu 1 312 0 3354 186 39 35 chr15 16999842 17000113 -68695641 - L1ME2 LINE L1 -55 6109 5841 2360 42 7 13 chr15 17000113 17000422 -68695332 + AluY SINE Alu 1 307 -4 3354 186 39 35 chr15 17000422 17000919 -68694835 - L1ME2 LINE L1 -323 5841 5338 1871 74 0 0 chr15 17001033 17001264 -68694490 - AluSc SINE Alu -76 233 3 587 80 45 0 chr15 17001266 17001354 -68694400 + L1MA3 LINE L1 6211 6302 -3 370 225 45 0 chr15 17001371 17001460 -68694294 + MIR SINE MIR 141 233 -29 616 257 61 0 chr15 17001970 17002118 -68693636 + MIR SINE MIR 36 192 -70 1934 130 7 16 chr15 17004473 17004815 -68690939 - AluSx SINE Alu 0 312 1 2144 108 0 13 chr15 17005657 17005973 -68689781 + AluSx SINE Alu 1 312 0 484 212 36 123 chr15 17006048 17006207 -68689547 - L1MC5 LINE L1 0 8042 7871 1856 150 3 0 chr15 17006207 17006493 -68689261 - AluSx SINE Alu -25 287 1 484 212 36 123 chr15 17006493 17006739 -68689015 - L1MC5 LINE L1 -171 7871 7697 248 250 10 0 chr15 17006739 17006835 -68688919 + CT-rich Low_complexity Low_complexity 2 98 0 2023 172 13 25 chr15 17006872 17007267 -68688487 - L1MC4 LINE L1 -364 7678 7289 2028 129 0 3 chr15 17007331 17007634 -68688120 - AluSg SINE Alu -8 302 1 197 271 85 0 chr15 17007736 17007795 -68687959 - L2 LINE L2 0 3313 3250 965 312 28 19 chr15 17008045 17008408 -68687346 - MLT1I LTR MaLR -18 391 57 2197 87 13 3 chr15 17008481 17008780 -68686974 - AluSq SINE Alu -11 302 1 642 252 115 53 chr15 17008803 17009237 -68686517 + L1MC5 LINE L1 7330 7809 -152 2164 91 3 0 chr15 17009237 17009523 -68686231 + AluSp SINE Alu 1 287 -26 642 252 115 53 chr15 17009523 17009655 -68686099 + L1MC5 LINE L1 7809 7931 -30 1826 123 3 7 chr15 17009701 17010008 -68685746 + AluSg SINE Alu 1 306 0 602 135 0 19 chr15 17010178 17010282 -68685472 - AluJo/FRAM SINE Alu -2 310 209 * 707 111 127 24 chr15 17010279 17010405 -68685349 + AluJo/FRAM SINE Alu 164 302 -10 746 234 98 96 chr15 17010428 17010696 -68685058 + L1ME4a LINE L1 5558 5824 -297 1802 164 3 3 chr15 17010696 17011000 -68684754 + AluJb SINE Alu 1 304 -8 746 234 98 96 chr15 17011000 17011294 -68684460 + L1ME4a LINE L1 5824 6121 0 474 18 0 0 chr15 17011698 17011753 -68684001 + (TG)n Simple_repeat Simple_repeat 2 56 0 3663 184 118 33 chr15 17012173 17012268 -68683486 - L1MB2 LINE L1 -31 6153 6067 2673 144 21 16 chr15 17012268 17012699 -68683055 - Tigger2a DNA MER2_type -1 433 1 3663 184 118 33 chr15 17012699 17014118 -68681636 - L1MB2 LINE L1 -117 6067 4493 1401 148 12 4 chr15 17014319 17014563 -68681191 - AluSq SINE Alu -2 311 66 471 102 0 0 chr15 17014563 17014622 -68681132 + AluSq/x SINE Alu 64 122 -191 453 138 0 0 chr15 17014620 17014685 -68681069 - AluJ/FLAM SINE Alu -246 66 2 * 1392 124 14 0 chr15 17014727 17014944 -68680810 + AluSp SINE Alu 6 225 -88 194 287 104 61 chr15 17015196 17015311 -68680443 - L2 LINE L2 -467 2847 2728 2157 106 0 0 chr15 17016992 17017284 -68678470 + AluSx SINE Alu 1 292 -20 369 0 0 0 chr15 17019165 17019206 -68676548 + (CA)n Simple_repeat Simple_repeat 1 41 0 2163 109 0 3 chr15 17019680 17019993 -68675761 - AluSx SINE Alu 0 312 1 399 248 195 65 chr15 17020499 17020658 -68675096 + LTR16C LTR ERVL 98 235 -256 2142 86 24 0 chr15 17020658 17020950 -68674804 - AluSx SINE Alu -13 299 1 399 248 195 65 chr15 17020950 17021113 -68674641 + LTR16C LTR ERVL 235 462 -29 1227 271 118 9 chr15 17021368 17021793 -68673961 - L3 LINE CR1 -5 1572 1102 2083 64 67 3 chr15 17021911 17022193 -68673561 + AluY SINE Alu 1 300 -11 1450 171 57 13 chr15 17022200 17022499 -68673255 + AluJb SINE Alu 1 312 0 751 168 74 124 chr15 17022647 17022766 -68672988 + LTR47A LTR ERVL 261 369 -83 2100 113 0 0 chr15 17022766 17023075 -68672679 - AluSg SINE Alu 0 311 3 751 168 74 124 chr15 17023075 17023156 -68672598 + LTR47A LTR ERVL 369 452 0 373 236 121 55 chr15 17023157 17023322 -68672432 - L3 LINE CR1 -471 1106 931 258 202 44 0 chr15 17023468 17023536 -68672218 + MLT1K LTR MaLR 137 249 -339 1770 138 3 17 chr15 17023545 17023836 -68671918 - AluJo SINE Alu -19 293 7 757 338 186 2 chr15 17024142 17024577 -68671177 - L3 LINE CR1 -701 876 362 213 39 0 0 chr15 17024655 17024681 -68671073 + (CA)n Simple_repeat Simple_repeat 1 26 0 3838 227 96 74 chr15 17025220 17025504 -68670250 - L1MCc LINE L1 -4888 1535 1259 1912 149 10 0 chr15 17025504 17025813 -68669941 - AluJb SINE Alu 0 312 1 3838 227 96 74 chr15 17025813 17026033 -68669721 - L1MCc LINE L1 -5164 1259 1045 2001 119 7 3 chr15 17026033 17026327 -68669427 - AluSx SINE Alu -17 295 1 3838 227 96 74 chr15 17026327 17027583 -68668171 - L1MCc LINE L1 -5378 1045 25 277 273 26 0 chr15 17027591 17027668 -68668086 + L2 LINE L2 2586 2664 -650 1056 214 131 32 chr15 17027778 17028293 -68667461 - MLT1G1 LTR MaLR 0 624 1 206 174 0 22 chr15 17028321 17028367 -68667387 + A-rich Low_complexity Low_complexity 2 46 0 470 332 77 38 chr15 17028443 17029018 -68666736 + L2 LINE L2 2678 3272 0 2357 55 0 0 chr15 17030425 17030718 -68665036 + AluY SINE Alu 1 293 -18 1311 141 13 18 chr15 17030935 17031162 -68664592 + AluJb SINE Alu 85 310 -2 1713 169 6 28 chr15 17031195 17031514 -68664240 + AluJb SINE Alu 1 312 0 2218 81 13 10 chr15 17031524 17031834 -68663920 + AluSp SINE Alu 1 311 -2 1014 162 28 11 chr15 17031944 17032123 -68663631 + FRAM SINE Alu 1 173 -3 558 0 0 0 chr15 17033229 17033291 -68662463 + (TG)n Simple_repeat Simple_repeat 2 63 0 1011 211 81 0 chr15 17035265 17035488 -68660266 - MIR SINE MIR 0 262 22 198 356 53 61 chr15 17035681 17035813 -68659941 + L2 LINE L2 3123 3253 -19 2266 100 0 0 chr15 17035876 17036176 -68659578 + AluSx SINE Alu 1 300 -12 1980 100 0 14 chr15 17038113 17038392 -68657362 - AluSx SINE Alu -5 307 33 189 171 0 0 chr15 17038392 17038427 -68657327 + CT-rich Low_complexity Low_complexity 1 35 0 1419 157 32 36 chr15 17038428 17038708 -68657046 - AluJo SINE Alu -33 279 1 6138 115 26 35 chr15 17039116 17039338 -68656416 + L1PB3 LINE L1 4850 5072 -1082 2260 76 0 3 chr15 17039338 17039628 -68656126 - AluSc SINE Alu -20 289 1 6138 115 26 35 chr15 17039628 17040513 -68655241 + L1PB3 LINE L1 5072 5952 -202 2198 98 0 16 chr15 17040513 17040828 -68654926 + AluSg SINE Alu 1 310 0 6138 115 26 35 chr15 17040828 17041019 -68654735 + L1PB3 LINE L1 5952 6143 -11 374 166 0 6 chr15 17041019 17041091 -68654663 + AluS SINE Alu 1 57 -243 2087 88 13 20 chr15 17041619 17041924 -68653830 + AluSq SINE Alu 8 310 -3 1887 157 0 0 chr15 17042401 17042713 -68653041 + AluJb SINE Alu 1 312 0 1650 134 47 0 chr15 17042723 17042998 -68652756 + L1MB3 LINE L1 5881 6168 -15 279 0 0 0 chr15 17042998 17043029 -68652725 + (CA)n Simple_repeat Simple_repeat 2 32 0 2422 58 3 3 chr15 17043129 17043440 -68652314 - AluY SINE Alu 0 311 1 401 247 111 37 chr15 17043607 17043769 -68651985 - MIR SINE MIR -87 175 2 290 283 0 0 chr15 17044801 17044861 -68650893 - L2 LINE L2 -1 3271 3212 2069 105 7 7 chr15 17044981 17045275 -68650479 + AluSx SINE Alu 1 294 -18 431 91 0 0 chr15 17045563 17045629 -68650125 + Alu SINE Alu 246 311 0 251 200 0 0 chr15 17045647 17045687 -68650067 - Alu SINE Alu -262 41 2 1616 103 0 5 chr15 17045714 17045938 -68649816 + AluSx SINE Alu 1 223 -89 1456 185 11 8 chr15 17045950 17046215 -68649539 + AluJb SINE Alu 21 286 -26 300 47 0 0 chr15 17046223 17046266 -68649488 + MER3 DNA MER1_type 145 187 -22 1070 292 90 24 chr15 17046307 17046762 -68648992 - LTR67 LTR ERVL -71 486 2 293 274 0 0 chr15 17046778 17046840 -68648914 - MER5A DNA MER1_type 0 189 128 317 225 0 28 chr15 17046905 17046976 -68648778 - MIR SINE MIR -34 228 160 180 0 0 0 chr15 17047313 17047333 -68648421 + (T)n Simple_repeat Simple_repeat 1 20 0 320 26 0 0 chr15 17047405 17047443 -68648311 + AluY SINE Alu 1 38 -263 1404 86 0 0 chr15 17047446 17047633 -68648121 + AluSg/x SINE Alu 122 308 -2 400 228 61 9 chr15 17047916 17048030 -68647724 + LTR67 LTR ERVL 428 547 -10 515 182 0 0 chr15 17048185 17048284 -68647470 - L1MB7 LINE L1 -8 6176 6078 225 0 0 0 chr15 17049313 17049338 -68646416 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 349 285 99 40 chr15 17049611 17049762 -68645992 - MIR SINE MIR 0 262 103 478 319 43 0 chr15 17050108 17050249 -68645505 - MIR3 SINE MIR -48 160 14 2141 83 31 0 chr15 17050313 17050602 -68645152 - AluSg SINE Alu -12 298 1 472 272 102 5 chr15 17050633 17050839 -68644915 - L1ME4a LINE L1 -53 6068 5843 859 98 0 0 chr15 17051479 17051601 -68644153 + FLAM_C SINE Alu 14 135 -8 2168 63 7 14 chr15 17051601 17051886 -68643868 + AluY SINE Alu 1 283 -28 552 263 31 94 chr15 17052159 17052273 -68643481 - MIR SINE MIR 0 262 167 2277 90 3 3 chr15 17052273 17052585 -68643169 - AluSp SINE Alu -1 312 1 552 263 31 94 chr15 17052585 17052694 -68643060 - MIR SINE MIR -95 167 53 227 149 0 0 chr15 17053751 17053798 -68641956 - L1MB5 LINE L1 0 6174 6128 782 219 6 30 chr15 17053798 17053967 -68641787 + FRAM SINE Alu 1 160 -16 3740 132 65 12 chr15 17053967 17054688 -68641066 - L1MB5 LINE L1 -36 6138 5259 710 142 7 35 chr15 17054702 17054843 -68640911 + L1ME2 LINE L1 5296 5432 -746 * 952 177 44 81 chr15 17054834 17055082 -68640672 + L1MC4a LINE L1 4758 4996 -1150 1121 209 0 0 chr15 17055083 17055294 -68640460 + AluJo SINE Alu 1 211 -101 783 228 5 0 chr15 17055294 17055487 -68640267 + L1MC4a LINE L1 5032 5225 -921 1989 172 24 16 chr15 17055488 17055812 -68639942 - L1M3 LINE L1 -530 5641 5309 1708 155 57 39 chr15 17055812 17056148 -68639606 + MER2 DNA MER2_type 1 342 -2 1989 172 24 16 chr15 17056148 17056330 -68639424 - L1M3 LINE L1 -862 5309 5130 1847 113 0 0 chr15 17056330 17056655 -68639099 - AluSx SINE Alu 0 354 30 347 182 13 0 chr15 17056759 17056836 -68638918 + (TA)n Simple_repeat Simple_repeat 1 78 0 315 250 86 66 chr15 17056883 17057035 -68638719 + L1 LINE L1 5089 5243 -903 2067 104 21 0 chr15 17057053 17057342 -68638412 + AluSg SINE Alu 1 295 -15 1930 226 82 41 chr15 17057363 17057910 -68637844 + L1MC4a LINE L1 5275 5853 -1955 1670 166 10 13 chr15 17057910 17058218 -68637536 + AluJo SINE Alu 1 307 -5 1930 226 82 41 chr15 17058218 17058307 -68637447 + L1MC4a LINE L1 5853 5937 -1871 2135 98 0 3 chr15 17058517 17058804 -68636950 - AluSc SINE Alu -23 286 1 267 169 20 0 chr15 17060091 17060146 -68635608 + L1ME2 LINE L1 5543 5601 -563 719 58 0 0 chr15 17060147 17060234 -68635520 + AluJ/FLAM SINE Alu 2 88 -224 1231 187 180 76 chr15 17060254 17060577 -68635177 + L1ME2 LINE L1 5653 6069 -95 249 88 0 0 chr15 17060577 17060611 -68635143 + MER3 DNA MER1_type 16 49 -160 1231 187 180 76 chr15 17060611 17060715 -68635039 + L1ME2 LINE L1 6069 6161 -3 243 88 0 0 chr15 17060720 17060754 -68635000 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 950 155 42 18 chr15 17060755 17060923 -68634831 - AluJb SINE Alu -34 278 107 1535 110 51 12 chr15 17060941 17061195 -68634559 + L1MA3 LINE L1 5881 6144 -161 2101 101 3 17 chr15 17061195 17061331 -68634423 + AluSx SINE Alu 1 137 -175 2214 93 3 6 chr15 17061331 17061643 -68634111 + AluY SINE Alu 1 311 0 2101 101 3 17 chr15 17061643 17061803 -68633951 + AluSx SINE Alu 137 293 -19 2034 86 7 33 chr15 17061937 17062238 -68633516 - AluSg SINE Alu -17 293 1 33 25 0 0 chr15 17062334 17062374 -68633380 + AT_rich Low_complexity Low_complexity 1 40 0 1599 207 0 6 chr15 17062440 17062754 -68633000 - AluJb SINE Alu 0 312 1 835 132 7 15 chr15 17062754 17062890 -68632864 - AluJo SINE Alu -177 135 1 2117 72 3 21 chr15 17063227 17063518 -68632236 + AluY SINE Alu 1 286 -25 1113 143 12 0 chr15 17063912 17064080 -68631674 + MLT1C LTR MaLR 250 419 -48 1493 163 26 83 chr15 17064084 17064241 -68631513 - AluJo SINE Alu -17 295 163 2261 118 0 7 chr15 17064241 17064545 -68631209 - AluSx SINE Alu -10 302 1 1493 163 26 83 chr15 17064545 17064700 -68631054 - AluJo SINE Alu -149 163 1 2301 122 0 6 chr15 17064958 17065270 -68630484 + AluSx SINE Alu 1 310 -2 1034 114 51 0 chr15 17066391 17066549 -68629205 - AluJ SINE Alu -6 306 141 780 213 0 0 chr15 17066553 17066776 -68628978 - FLAM_C SINE Alu 0 224 2 474 205 90 86 chr15 17066941 17067333 -68628421 - LTR4 LTR ERV1 0 596 112 1499 106 0 0 chr15 17067489 17067688 -68628066 + AluSg/x SINE Alu 102 300 -12 199 317 0 24 chr15 17067968 17068050 -68627704 - L2 LINE L2 -225 3047 2968 489 148 23 23 chr15 17068186 17068274 -68627480 - Charlie4a DNA MER1_type 0 508 421 506 174 183 17 chr15 17068282 17068397 -68627357 - AluJ SINE Alu -177 135 2 1282 201 99 57 chr15 17068397 17068520 -68627234 - Charlie4a DNA MER1_type -1522 439 323 2242 114 0 3 chr15 17068520 17068819 -68626935 - AluSx SINE Alu -14 298 1 1282 201 99 57 chr15 17068819 17069098 -68626656 - Charlie4a DNA MER1_type -1638 323 20 373 254 179 23 chr15 17069508 17069681 -68626073 + MIR SINE MIR 49 248 -14 747 0 0 0 chr15 17070168 17070250 -68625504 - tRNA-Ser-AGC tRNA tRNA -3 82 1 839 211 100 0 chr15 17071982 17072172 -68623582 + MER3 DNA MER1_type 1 209 0 542 203 14 43 chr15 17072260 17072398 -68623356 - MER58C DNA MER1_type -22 193 60 648 115 97 73 chr15 17072443 17072608 -68623146 - MER119 DNA MER1_type -36 547 379 858 167 49 0 chr15 17072610 17072772 -68622982 - AluSg/x SINE Alu -2 308 139 435 259 15 7 chr15 17072776 17072993 -68622761 - FLAM_C SINE Alu 0 224 7 601 192 0 0 chr15 17073551 17073671 -68622083 + AluSp/q SINE Alu 185 304 -9 547 284 8 0 chr15 17073761 17073888 -68621866 - MER119 DNA MER1_type -448 135 8 1908 131 0 73 chr15 17073896 17074224 -68621530 - AluSx SINE Alu -8 304 1 694 183 7 0 chr15 17074541 17074678 -68621076 + AluSg SINE Alu 3 140 -170 387 321 15 30 chr15 17074715 17074849 -68620905 + G-rich Low_complexity Low_complexity 6 137 0 323 270 7 33 chr15 17074862 17075014 -68620740 + G-rich Low_complexity Low_complexity 1 148 0 195 42 0 0 chr15 17075247 17075271 -68620483 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr15 17075271 17075291 -68620463 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1858 153 3 0 chr15 17075330 17075624 -68620130 - AluJb SINE Alu -17 295 1 411 231 10 0 chr15 17075631 17075735 -68620019 - L1M4 LINE L1 -2228 3918 3814 1165 128 0 0 chr15 17075735 17075899 -68619855 - FAM SINE Alu -4 45 1 360 260 10 0 chr15 17075919 17076015 -68619739 - L1M4 LINE L1 -2318 3828 3732 2145 124 7 0 chr15 17076017 17076316 -68619438 - AluSq SINE Alu -12 301 1 242 222 46 65 chr15 17076452 17076560 -68619194 + AluJb SINE Alu 121 226 -76 1779 154 42 27 chr15 17077072 17077403 -68618351 + MER1B DNA MER1_type 1 336 -1 2125 45 48 31 chr15 17077593 17077884 -68617870 + AluY SINE Alu 1 296 -15 2087 54 88 44 chr15 17077901 17078060 -68617694 - AluY SINE Alu -4 307 156 2092 67 11 25 chr15 17078060 17078343 -68617411 - AluY SINE Alu -1 310 32 2087 54 88 44 chr15 17078343 17078477 -68617277 - AluY SINE Alu -155 156 1 2404 89 7 0 chr15 17078522 17078826 -68616928 - AluSp SINE Alu -7 306 1 2193 47 11 11 chr15 17079131 17079410 -68616344 - L1PA6 LINE L1 -2 6152 5874 21 0 0 0 chr15 17079533 17079554 -68616200 + AT_rich Low_complexity Low_complexity 1 21 0 2690 165 2 11 chr15 17079574 17080029 -68615725 - MER66B LTR ERV1 -35 451 1 329 0 24 0 chr15 17080045 17080086 -68615668 + (CAT)n Simple_repeat Simple_repeat 2 43 0 658 225 0 0 chr15 17080310 17080439 -68615315 - FLAM_A SINE Alu -4 129 1 666 319 46 25 chr15 17080439 17080717 -68615037 + MER102a DNA MER1_type 44 330 0 1765 147 18 7 chr15 17081389 17081674 -68614080 - AluSx SINE Alu -24 288 1 431 326 102 58 chr15 17081674 17082107 -68613647 - MLT1K LTR MaLR -46 542 91 1538 201 10 29 chr15 17082516 17082688 -68613066 - AluJo SINE Alu -5 307 142 1839 162 10 3 chr15 17082688 17082984 -68612770 - AluJb SINE Alu -14 298 1 1538 201 10 29 chr15 17082984 17083124 -68612630 - AluJo SINE Alu -170 142 1 539 178 30 0 chr15 17083136 17083237 -68612517 - U13 snRNA snRNA 0 104 1 3140 115 17 11 chr15 17083617 17084087 -68611667 + L1MB3 LINE L1 5383 5855 -328 1560 121 163 15 chr15 17084116 17084380 -68611374 + AluSg1 SINE Alu 1 303 -6 2253 100 3 10 chr15 17084387 17084686 -68611068 + AluSp SINE Alu 3 299 -14 263 228 139 0 chr15 17084964 17085049 -68610705 + L1 LINE L1 4030 4126 -2020 1901 157 0 23 chr15 17085050 17085355 -68610399 + AluJo SINE Alu 1 298 -14 310 244 130 17 chr15 17085557 17085672 -68610082 + L2 LINE L2 3186 3313 0 207 0 0 0 chr15 17085769 17085792 -68609962 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 847 156 95 22 chr15 17085805 17085984 -68609770 + AluJb SINE Alu 112 303 -9 1763 167 28 11 chr15 17086340 17086627 -68609127 + AluJo SINE Alu 1 292 -20 1935 125 7 4 chr15 17086839 17087119 -68608635 - AluJb SINE Alu -30 282 2 2321 101 0 13 chr15 17087171 17087479 -68608275 - AluSg SINE Alu -6 304 1 25 0 0 0 chr15 17087524 17087549 -68608205 + AT_rich Low_complexity Low_complexity 1 25 0 38 51 0 0 chr15 17087589 17087648 -68608106 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr15 17087770 17087812 -68607942 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr15 17087833 17087870 -68607884 + AT_rich Low_complexity Low_complexity 1 37 0 343 242 11 21 chr15 17087870 17087965 -68607789 + L1MC4a LINE L1 5348 5441 -2367 2084 97 3 24 chr15 17087970 17088108 -68607646 + AluSx SINE Alu 1 140 -184 2287 95 0 16 chr15 17088108 17088414 -68607340 + AluSc SINE Alu 1 301 -8 2084 97 3 24 chr15 17088414 17088605 -68607149 + AluSx SINE Alu 140 324 0 1283 256 11 7 chr15 17088608 17088889 -68606865 + AluSg SINE Alu 1 282 -28 269 456 0 41 chr15 17088890 17089037 -68606717 + G-rich Low_complexity Low_complexity 1 141 0 279 464 0 0 chr15 17089081 17089191 -68606563 + G-rich Low_complexity Low_complexity 1 110 0 853 205 21 39 chr15 17089347 17089581 -68606173 - AluSc SINE Alu -73 236 7 837 281 81 27 chr15 17089641 17090051 -68605703 + L1MC4a LINE L1 5536 5912 -252 23 0 0 0 chr15 17090301 17090324 -68605430 + AT_rich Low_complexity Low_complexity 1 23 0 1173 146 0 0 chr15 17090374 17090539 -68605215 - AluSp SINE Alu -15 298 134 305 24 24 0 chr15 17090539 17090581 -68605173 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2130 80 0 24 chr15 17090581 17090868 -68604886 - AluY SINE Alu -30 281 2 2271 75 14 10 chr15 17090879 17091171 -68604583 - AluSq SINE Alu -20 293 1 2296 109 0 10 chr15 17091229 17091533 -68604221 - AluSq SINE Alu -12 301 1 1453 154 39 11 chr15 17092061 17092341 -68603413 - AluSx SINE Alu -19 293 6 247 234 188 0 chr15 17093026 17093090 -68602664 - MER5C DNA MER1_type -248 76 1 344 179 0 0 chr15 17093254 17093310 -68602444 - MER66B LTR ERV1 -136 350 295 321 26 0 0 chr15 17093488 17093526 -68602228 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr15 17094032 17094052 -68601702 + (TAA)n Simple_repeat Simple_repeat 2 21 0 847 106 25 38 chr15 17094173 17094333 -68601421 + L1MA4 LINE L1 6143 6300 0 198 0 0 0 chr15 17094869 17094891 -68600863 + (TA)n Simple_repeat Simple_repeat 2 23 0 1860 166 0 7 chr15 17094916 17095217 -68600537 - AluJo SINE Alu -13 299 1 291 109 0 55 chr15 17095327 17095382 -68600372 - L1ME LINE L1 -664 5498 5447 1972 116 0 64 chr15 17098763 17099106 -68596648 - AluSx SINE Alu 0 312 1 280 242 198 0 chr15 17099117 17099208 -68596546 - L2 LINE L2 -9 3304 3196 2113 127 0 0 chr15 17099220 17099511 -68596243 - AluSx SINE Alu -17 295 5 2186 136 0 0 chr15 17099521 17099830 -68595924 - AluSx SINE Alu -3 309 1 2429 87 0 0 chr15 17099868 17100166 -68595588 + AluY SINE Alu 1 298 -13 22 0 0 0 chr15 17101134 17101156 -68594598 + AT_rich Low_complexity Low_complexity 1 22 0 908 200 6 0 chr15 17101256 17101421 -68594333 + FRAM SINE Alu 1 163 -13 854 177 26 31 chr15 17101998 17102190 -68593564 - AluSg SINE Alu -118 192 2 1316 210 4 7 chr15 17102409 17102690 -68593064 - AluSg SINE Alu -30 280 1 642 233 0 0 chr15 17102935 17103055 -68592699 + FLAM_A SINE Alu 2 121 -12 3125 135 8 38 chr15 17103362 17103727 -68592027 + MER1A DNA MER1_type 49 397 -2305 1921 153 13 7 chr15 17103727 17104035 -68591719 + AluSx SINE Alu 1 310 -2 3125 135 8 38 chr15 17104035 17104165 -68591589 + MER1A DNA MER1_type 397 529 0 421 311 129 14 chr15 17104202 17104371 -68591383 + L1M4 LINE L1 2872 3020 -3126 929 143 0 0 chr15 17104371 17104504 -68591250 - FLAM_C SINE Alu 0 133 1 421 311 129 14 chr15 17104504 17104616 -68591138 + L1M4 LINE L1 3020 3118 -3028 1834 177 3 3 chr15 17104616 17104921 -68590833 + AluJo SINE Alu 1 305 -7 421 311 129 14 chr15 17104921 17104988 -68590766 + L1M4 LINE L1 3118 3261 -2885 653 191 0 0 chr15 17104994 17105104 -68590650 + FLAM_A SINE Alu 1 110 -32 1471 204 21 0 chr15 17105220 17105509 -68590245 + AluJb SINE Alu 5 299 -13 592 138 52 0 chr15 17105510 17105626 -68590128 + L1M4 LINE L1 5195 5316 -830 849 153 0 22 chr15 17105628 17105765 -68589989 + FLAM_C SINE Alu 1 134 -9 281 159 0 43 chr15 17105790 17105859 -68589895 + L1M LINE L1 5293 5358 -820 3365 123 34 24 chr15 17105859 17105937 -68589817 + Tigger3b DNA MER2_type 1 77 -2951 1967 127 63 0 chr15 17105937 17106221 -68589533 + AluSx SINE Alu 1 302 -10 3365 123 34 24 chr15 17106221 17106432 -68589322 + Tigger3b DNA MER2_type 77 285 -2743 1581 193 30 3 chr15 17106432 17106728 -68589026 - AluJo SINE Alu -8 304 1 3365 123 34 24 chr15 17106728 17106972 -68588782 + Tigger3b DNA MER2_type 285 540 -691 2124 117 7 7 chr15 17106973 17107293 -68588461 - AluSq SINE Alu 0 313 3 408 167 11 22 chr15 17107296 17107386 -68588368 + L1MB8 LINE L1 6090 6178 0 1076 141 32 27 chr15 17107950 17108170 -68587584 - AluY SINE Alu -22 289 69 519 130 22 11 chr15 17108279 17108371 -68587383 - AluS SINE Alu -220 93 1 870 201 136 125 chr15 17108680 17108785 -68586969 - L1MC5 LINE L1 -37 7924 7822 1814 148 3 11 chr15 17108785 17109068 -68586686 + AluSx SINE Alu 6 286 -26 870 201 136 125 chr15 17109068 17109712 -68586042 - L1MC5 LINE L1 -139 7822 7167 827 170 7 7 chr15 17109719 17109854 -68585900 + Tigger4(Zombi) DNA MER2_type 1 135 -2596 1729 125 29 4 chr15 17109858 17110130 -68585624 + Tigger4(Zombi) DNA MER2_type 2415 2693 -38 912 161 47 5 chr15 17110130 17110322 -68585432 + AluSx SINE Alu 1 200 -112 468 192 192 16 chr15 17110522 17110647 -68585107 - AluJo SINE Alu -163 149 3 2196 108 3 3 chr15 17110655 17110960 -68584794 - AluSx SINE Alu -1 311 7 2019 102 65 0 chr15 17110973 17111266 -68584488 - AluSp SINE Alu -1 312 1 1497 164 23 59 chr15 17111346 17111477 -68584277 + AluJb SINE Alu 1 135 -177 2300 104 3 0 chr15 17111477 17111784 -68583970 + AluSq SINE Alu 1 308 -5 1497 164 23 59 chr15 17111784 17111956 -68583798 + AluJb SINE Alu 135 293 -19 1290 185 9 0 chr15 17111966 17112182 -68583572 + AluJo SINE Alu 1 218 -94 618 353 12 8 chr15 17112259 17112500 -68583254 - AluSg/x SINE Alu -1 311 70 2235 99 20 0 chr15 17113203 17113495 -68582259 - AluSx SINE Alu -14 298 1 341 244 155 2 chr15 17114247 17114382 -68581372 + MIR SINE MIR 2 152 -62 1698 131 131 6 chr15 17114557 17114877 -68580877 + MER46B DNA MER2_type 1 235 -1 2097 84 0 0 chr15 17115220 17115481 -68580273 + AluY SINE Alu 1 261 -50 395 235 10 31 chr15 17115652 17115750 -68580004 + AluY SINE Alu 202 297 -4 460 208 20 0 chr15 17115803 17115904 -68579850 - L2 LINE L2 -5 3308 3206 207 69 0 0 chr15 17115944 17115973 -68579781 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2189 101 0 0 chr15 17115976 17116254 -68579500 - AluSx SINE Alu -29 283 6 1839 118 80 3 chr15 17116508 17116795 -68578959 - AluY SINE Alu -2 309 1 1270 96 0 45 chr15 17116818 17116995 -68578759 + AluSc SINE Alu 123 291 -18 3300 203 28 76 chr15 17117283 17118301 -68577453 - LTR5 LTR ERVK 0 969 1 47 44 0 0 chr15 17119737 17119805 -68575949 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr15 17119827 17119859 -68575895 + AT_rich Low_complexity Low_complexity 1 32 0 2553 66 0 0 chr15 17119907 17120210 -68575544 + AluY SINE Alu 1 303 -8 2228 79 4 0 chr15 17120536 17120813 -68574941 + AluSx SINE Alu 13 290 -22 180 0 0 0 chr15 17120821 17120841 -68574913 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 362 320 127 14 chr15 17121007 17121354 -68574400 + L2 LINE L2 1867 2252 -1062 207 348 36 36 chr15 17121343 17121455 -68574299 - L2 LINE L2 -8 3264 3153 * 1115 178 5 0 chr15 17121567 17121752 -68574002 + AluJo SINE Alu 86 271 -41 24 0 0 0 chr15 17121754 17121778 -68573976 + AT_rich Low_complexity Low_complexity 1 24 0 495 145 0 174 chr15 17122158 17122440 -68573314 - AluSp SINE Alu -7 306 74 2323 87 3 26 chr15 17122612 17122924 -68572830 - AluSp SINE Alu -8 305 1 2117 120 3 0 chr15 17123094 17123378 -68572376 - AluSx SINE Alu -24 288 4 21 0 0 0 chr15 17123386 17123407 -68572347 + AT_rich Low_complexity Low_complexity 1 21 0 1018 140 7 0 chr15 17123409 17123552 -68572202 - FRAM SINE Alu -30 146 3 287 388 25 6 chr15 17123680 17123840 -68571914 + L2 LINE L2 3106 3268 -4 197 256 11 100 chr15 17123878 17123968 -68571786 + L2 LINE L2 1371 1452 -1862 201 74 0 0 chr15 17126289 17126316 -68569438 + (T)n Simple_repeat Simple_repeat 1 27 0 271 188 16 188 chr15 17126316 17126329 -68569425 - HAL1 LINE L1 -1677 830 816 1902 125 20 14 chr15 17126329 17126625 -68569129 + AluSx SINE Alu 6 303 -9 271 188 16 188 chr15 17126625 17126803 -68568951 - HAL1 LINE L1 -1691 816 672 288 326 116 29 chr15 17126869 17127011 -68568743 + L2 LINE L2 2372 2500 -814 1896 131 14 14 chr15 17127011 17127334 -68568420 - AluSx SINE Alu 0 312 1 288 326 116 29 chr15 17127334 17127467 -68568287 + L2 LINE L2 2500 2671 -643 219 133 0 0 chr15 17127974 17128019 -68567735 + (A)n Simple_repeat Simple_repeat 1 45 0 24 91 0 0 chr15 17128033 17128099 -68567655 + AT_rich Low_complexity Low_complexity 1 66 0 235 409 31 8 chr15 17128264 17128391 -68567363 + L2 LINE L2 3123 3252 -20 2244 93 0 7 chr15 17128836 17129125 -68566629 + AluY SINE Alu 1 287 -24 2045 143 3 0 chr15 17129264 17129557 -68566197 + AluSx SINE Alu 1 294 -18 2289 109 3 10 chr15 17129560 17129872 -68565882 + AluSg SINE Alu 1 310 0 2124 124 3 3 chr15 17129882 17130172 -68565582 + AluSg SINE Alu 2 291 -19 2023 141 0 3 chr15 17130334 17130640 -68565114 + AluSx SINE Alu 3 307 -5 180 351 104 15 chr15 17130744 17130878 -68564876 + L2 LINE L2 1317 1462 -1852 2244 157 72 2 chr15 17131207 17131608 -68564146 - MLT1C LTR MaLR 0 467 39 378 75 0 0 chr15 17131724 17131777 -68563977 + Alu SINE Alu 247 299 -1 2287 61 43 0 chr15 17131993 17132273 -68563481 - AluY SINE Alu -18 293 2 1994 117 0 18 chr15 17132537 17132818 -68562936 - AluSg SINE Alu -34 276 1 804 136 0 0 chr15 17132827 17132937 -68562817 - AluSq/x SINE Alu -202 110 1 570 206 19 0 chr15 17133059 17133166 -68562588 - AluSg/x SINE Alu -21 289 181 258 330 34 17 chr15 17133269 17133388 -68562366 + CT-rich Low_complexity Low_complexity 1 121 0 2239 71 7 14 chr15 17133928 17134223 -68561531 + AluSx SINE Alu 1 293 -19 1918 172 0 0 chr15 17134851 17135154 -68560600 + AluJb SINE Alu 1 303 -9 2454 74 7 0 chr15 17135231 17135529 -68560225 - AluY SINE Alu -10 301 2 22 35 0 0 chr15 17135931 17135960 -68559794 + AT_rich Low_complexity Low_complexity 1 29 0 338 210 12 25 chr15 17136632 17136713 -68559041 + FLAM SINE Alu 44 123 -10 1731 163 10 17 chr15 17136725 17137026 -68558728 + AluSp SINE Alu 1 299 -14 801 164 0 0 chr15 17137026 17137154 -68558600 - AluJo/FLAM SINE Alu -172 130 3 2080 134 3 3 chr15 17137201 17137506 -68558248 - AluSx SINE Alu -7 305 1 192 152 0 0 chr15 17137540 17137573 -68558181 + T-rich Low_complexity Low_complexity 1 33 0 416 169 0 0 chr15 17137574 17137639 -68558115 - AluS SINE Alu -246 66 2 246 32 0 0 chr15 17137694 17137725 -68558029 + (T)n Simple_repeat Simple_repeat 1 31 0 806 188 0 0 chr15 17137741 17137874 -68557880 - FLAM_C SINE Alu 0 133 1 1769 165 34 3 chr15 17138072 17138363 -68557391 - AluJb SINE Alu -12 300 1 228 247 65 11 chr15 17138577 17138670 -68557084 - AluJb SINE Alu -178 124 27 1898 86 0 0 chr15 17138935 17139168 -68556586 + AluSg/x SINE Alu 66 298 -14 1904 81 4 0 chr15 17139370 17139606 -68556148 + AluSg SINE Alu 1 237 -73 2089 127 93 51 chr15 17139920 17140102 -68555652 + MSTC LTR MaLR 1 174 -254 2095 136 0 3 chr15 17140102 17140397 -68555357 + AluSx SINE Alu 1 294 -18 1673 183 6 25 chr15 17140406 17140723 -68555031 + AluJb SINE Alu 1 311 -1 2089 127 93 51 chr15 17140723 17140939 -68554815 + MSTC LTR MaLR 181 426 -2 368 119 17 47 chr15 17140999 17141232 -68554522 - L1MA7 LINE L1 -149 7561 7323 2252 106 0 3 chr15 17141232 17141525 -68554229 - AluSc SINE Alu -17 292 1 368 119 17 47 chr15 17141525 17141873 -68553881 - L1MA7 LINE L1 -387 7323 7028 2344 110 0 0 chr15 17141873 17142182 -68553572 - AluSc SINE Alu 0 309 1 368 119 17 47 chr15 17142182 17142527 -68553227 - L1MA7 LINE L1 -682 7028 6674 1516 175 14 11 chr15 17142536 17142816 -68552938 - AluY SINE Alu -28 283 3 235 330 0 0 chr15 17142828 17142934 -68552820 + A-rich Low_complexity Low_complexity 1 106 0 183 129 0 0 chr15 17142953 17142984 -68552770 + (A)n Simple_repeat Simple_repeat 1 31 0 262 188 27 65 chr15 17143034 17143220 -68552534 + A-rich Low_complexity Low_complexity 2 180 0 30 93 0 0 chr15 17143220 17143263 -68552491 + AT_rich Low_complexity Low_complexity 1 43 0 1522 125 0 13 chr15 17143400 17143624 -68552130 - AluSc SINE Alu -88 221 1 5423 185 138 130 chr15 17143624 17144354 -68551400 - L1MA7 LINE L1 -876 6689 5967 2397 84 3 3 chr15 17144354 17144653 -68551101 - AluY SINE Alu -12 299 1 5423 185 138 130 chr15 17144653 17144811 -68550943 - L1MA7 LINE L1 -1598 5967 5812 2284 111 0 7 chr15 17144811 17145118 -68550636 + AluSg SINE Alu 1 305 -5 1171 125 0 0 chr15 17145124 17145284 -68550470 + AluSg/x SINE Alu 138 297 -13 5423 185 138 130 chr15 17145284 17145583 -68550171 - L1MA7 LINE L1 -1757 5808 5513 327 221 0 29 chr15 17145583 17145651 -68550103 + AluS SINE Alu 1 66 -237 1344 121 0 0 chr15 17145651 17145825 -68549929 - AluSx SINE Alu -137 175 2 5423 185 138 130 chr15 17145825 17146205 -68549549 - L1MA7 LINE L1 -2052 5513 5138 2442 89 0 6 chr15 17146205 17146518 -68549236 - AluY SINE Alu 0 311 1 5423 185 138 130 chr15 17146518 17146706 -68549048 - L1MA7 LINE L1 -2427 5138 4953 2197 105 24 0 chr15 17146706 17147000 -68548754 - AluSx SINE Alu -9 303 3 5423 185 138 130 chr15 17147000 17148287 -68547467 - L1MA7 LINE L1 -2612 4953 3678 2294 116 0 0 chr15 17148287 17148589 -68547165 + AluSg1 SINE Alu 1 302 -7 5423 185 138 130 chr15 17148589 17148635 -68547119 - L1MA7 LINE L1 -3887 3678 3634 1649 154 7 4 chr15 17148635 17148907 -68546847 - AluSq SINE Alu -38 275 3 5423 185 138 130 chr15 17148907 17148977 -68546777 - L1MA7 LINE L1 -3931 3634 3087 594 105 0 0 chr15 17148961 17149047 -68546707 - L1 LINE L1 -3783 2363 2278 * 5604 116 48 46 chr15 17149059 17150443 -68545311 - pTR5 LTR ERV1 -143 2295 743 2990 137 146 76 chr15 17150491 17150559 -68545195 - L1MA7 LINE L1 -4463 3102 3040 2254 111 20 0 chr15 17150559 17150865 -68544889 - AluSx SINE Alu 0 312 1 2990 137 146 76 chr15 17150865 17151342 -68544412 - L1MA7 LINE L1 -4525 3040 2598 609 414 29 83 chr15 17151342 17151654 -68544100 - AluY SINE Alu -6 295 1 2990 137 146 76 chr15 17151654 17152297 -68543457 - L1MA7 LINE L1 -4967 2598 2001 2489 71 0 0 chr15 17152297 17152594 -68543160 - AluY SINE Alu -14 297 1 2990 137 146 76 chr15 17152594 17152610 -68543144 - L1MA7 LINE L1 -5564 2001 1988 2248 113 3 7 chr15 17152610 17152920 -68542834 - AluSx SINE Alu -3 309 1 2990 137 146 76 chr15 17152920 17153083 -68542671 - L1MA7 LINE L1 -5577 1988 1411 2385 177 132 12 chr15 17153067 17153576 -68542178 - L1MA7 LINE L1 -6987 578 9 * 3926 123 38 0 chr15 17153568 17154193 -68541561 - L1M1 LINE L1 -4499 3066 2418 582 205 6 12 chr15 17154194 17154355 -68541399 + CT-rich Low_complexity Low_complexity 1 160 0 2373 90 3 3 chr15 17154358 17154659 -68541095 - AluSp SINE Alu -10 303 3 1933 156 10 0 chr15 17154661 17154956 -68540798 - AluSx SINE Alu -14 298 1 301 112 0 12 chr15 17155011 17155068 -68540686 + AluSp SINE Alu 120 170 -133 1765 98 17 0 chr15 17155068 17155304 -68540450 + HERVK11 LTR ERVK 6528 6767 -1186 1125 199 17 21 chr15 17155289 17155530 -68540224 + HERVK11 LTR ERVK 6957 7196 -757 * 223 272 40 24 chr15 17155640 17155765 -68539989 + G-rich Low_complexity Low_complexity 4 130 0 924 122 0 8 chr15 17156071 17156202 -68539552 - AluSq/x SINE Alu -183 130 1 12069 143 34 8 chr15 17156202 17156290 -68539464 - L1M1 LINE L1 -5133 2432 2348 9661 25 7 234 chr15 17156290 17158074 -68537680 + SVA Other Other 7 1384 -2 12069 143 34 8 chr15 17158074 17159855 -68535899 - L1M1 LINE L1 -5217 2348 514 6433 103 8 19 chr15 17159893 17160865 -68534889 - MER11C LTR ERVK -14 1057 4 7721 56 0 1 chr15 17160867 17161791 -68533963 - HERVK11 LTR ERVK 0 7953 7031 951 104 0 15 chr15 17162083 17162217 -68533537 - FLAM_C SINE Alu -5 138 7 1917 124 18 3 chr15 17162412 17162694 -68533060 - AluSx SINE Alu -26 286 1 444 212 0 10 chr15 17163245 17163344 -68532410 - AluJb SINE Alu -91 221 124 2126 109 7 14 chr15 17164225 17164518 -68531236 - AluSx SINE Alu -21 291 1 231 114 0 0 chr15 17164567 17164602 -68531152 + (T)n Simple_repeat Simple_repeat 1 35 0 728 122 9 0 chr15 17164610 17164717 -68531037 - AluSg/x SINE Alu -4 305 198 2301 101 10 0 chr15 17165087 17165394 -68530360 - AluSp SINE Alu -3 310 1 696 218 0 0 chr15 17165404 17165537 -68530217 - FLAM_C SINE Alu 0 133 1 282 286 0 0 chr15 17166671 17166734 -68529020 - MER2 DNA MER2_type 0 345 283 793 139 0 0 chr15 17166756 17166871 -68528883 - MER2 DNA MER2_type -210 135 21 2801 46 32 0 chr15 17167085 17167482 -68528272 - MER11B LTR ERVK -733 503 1 8302 57 4 1 chr15 17167482 17168476 -68527278 - HERVK11 LTR ERVK 0 7953 6957 1757 98 17 0 chr15 17168461 17168697 -68527057 - HERVK11 LTR ERVK -1186 6767 6528 * 301 112 0 12 chr15 17168697 17168754 -68527000 - AluSp SINE Alu -133 170 120 1978 166 0 0 chr15 17168809 17169117 -68526637 + AluSq SINE Alu 1 308 -5 2660 185 43 2 chr15 17169170 17169657 -68526097 + L1M1 LINE L1 14 520 -7045 1831 38 0 0 chr15 17169675 17169886 -68525868 + HERVK11 LTR ERVK 6320 6530 -1423 * 5293 47 5 2 chr15 17169882 17170521 -68525233 - HERVK11 LTR ERVK -1617 6336 5696 412 83 17 0 chr15 17170521 17170581 -68525173 - L1MA7 LINE L1 -97 6194 6134 263 203 13 0 chr15 17170867 17170946 -68524808 + (TA)n Simple_repeat Simple_repeat 1 80 0 1574 173 0 97 chr15 17170947 17171144 -68524610 - AluJo SINE Alu -11 301 147 2297 83 13 3 chr15 17171144 17171446 -68524308 + AluSc SINE Alu 1 305 -4 1574 173 0 97 chr15 17171446 17171577 -68524177 - AluJo SINE Alu -165 147 5 26 30 0 0 chr15 17171800 17171833 -68523921 + AT_rich Low_complexity Low_complexity 1 33 0 2056 98 87 0 chr15 17171956 17172242 -68523512 - AluSx SINE Alu 0 312 2 1667 149 59 43 chr15 17172646 17172968 -68522786 + MER1B DNA MER1_type 1 327 -12 193 320 93 10 chr15 17172979 17173076 -68522678 + L2 LINE L2 2580 2684 -630 708 169 25 0 chr15 17173155 17173273 -68522481 + AluJo/FLAM SINE Alu 9 129 -183 2140 96 3 7 chr15 17173276 17173599 -68522155 + AluSx SINE Alu 1 322 0 2383 75 3 0 chr15 17173693 17173986 -68521768 - AluSg1 SINE Alu -15 294 1 1855 123 3 21 chr15 17174018 17174303 -68521451 - AluJo SINE Alu -26 286 7 1921 124 18 3 chr15 17174498 17174780 -68520974 - AluSx SINE Alu -26 286 1 529 165 0 0 chr15 17175324 17175421 -68520333 - FLAM_A SINE Alu -45 97 1 2341 68 0 10 chr15 17176316 17176610 -68519144 - AluSx SINE Alu -21 291 1 192 40 0 0 chr15 17176612 17176637 -68519117 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 461 260 81 73 chr15 17176637 17176725 -68519029 - L1ME3A LINE L1 -3 6167 6081 1563 149 30 8 chr15 17176725 17176993 -68518761 + AluJb SINE Alu 1 274 -38 461 260 81 73 chr15 17176993 17177150 -68518604 - L1ME3A LINE L1 -89 6081 5920 823 207 92 48 chr15 17177154 17177507 -68518247 - L1ME3A LINE L1 -621 5543 5207 242 29 29 0 chr15 17177507 17177542 -68518212 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2282 83 3 14 chr15 17177546 17177834 -68517920 - AluSp SINE Alu -26 287 3 823 207 92 48 chr15 17177834 17177943 -68517811 - L1ME3A LINE L1 -959 5205 5060 2114 115 18 96 chr15 17177955 17178003 -68517751 - L1MA6 LINE L1 -1 6299 6249 2245 50 96 4 chr15 17178003 17178283 -68517471 - AluY SINE Alu -5 306 1 2114 115 18 96 chr15 17178283 17178616 -68517138 - L1MA6 LINE L1 -51 6249 5954 2206 109 3 0 chr15 17178616 17178918 -68516836 - AluSc SINE Alu -6 303 1 2114 115 18 96 chr15 17178918 17178971 -68516783 - L1MA6 LINE L1 -346 5954 5898 207 0 0 0 chr15 17179570 17179593 -68516161 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2317 82 4 0 chr15 17179595 17179875 -68515879 - AluSp SINE Alu -32 281 1 696 218 0 0 chr15 17179885 17180018 -68515736 - FLAM_C SINE Alu 0 133 1 282 286 0 0 chr15 17181152 17181215 -68514539 - MER2 DNA MER2_type 0 345 283 793 139 0 0 chr15 17181237 17181352 -68514402 - MER2 DNA MER2_type -210 135 21 1394 150 187 19 chr15 17181767 17182061 -68513693 - AluSx SINE Alu 0 339 1 1869 171 10 13 chr15 17182205 17182514 -68513240 - AluSc SINE Alu -1 308 1 21 0 0 0 chr15 17182722 17182743 -68513011 + AT_rich Low_complexity Low_complexity 1 21 0 1953 145 0 16 chr15 17183172 17183475 -68512279 - AluSx SINE Alu -10 302 5 841 142 47 83 chr15 17183478 17183647 -68512107 - FRAM SINE Alu -13 163 1 253 365 44 25 chr15 17183762 17183921 -68511833 + L2 LINE L2 3106 3267 -5 692 125 0 0 chr15 17183940 17184036 -68511718 - AluS SINE Alu -216 97 2 1845 247 78 6 chr15 17184125 17184564 -68511190 - L1M4 LINE L1 -2629 3517 3111 1521 173 6 77 chr15 17184564 17184730 -68511024 - AluJo SINE Alu -11 301 125 207 0 0 0 chr15 17184730 17184753 -68511001 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2054 92 33 0 chr15 17184753 17185025 -68510729 - AluSg SINE Alu -29 281 1 2057 129 3 0 chr15 17185025 17185320 -68510434 - AluSg SINE Alu -14 296 1 1521 173 6 77 chr15 17185320 17185332 -68510422 - AluJo SINE Alu -185 127 116 2286 114 0 0 chr15 17185332 17185629 -68510125 - AluSg SINE Alu -13 297 1 1521 173 6 77 chr15 17185629 17185771 -68509983 - AluJo SINE Alu -196 116 1 1845 247 78 6 chr15 17185771 17185955 -68509799 - L1M4 LINE L1 -3035 3111 2849 2354 63 0 7 chr15 17186258 17186567 -68509187 - AluY SINE Alu 0 307 1 970 190 78 58 chr15 17187076 17187371 -68508383 + AluSp SINE Alu 1 301 -2 1468 171 24 44 chr15 17188270 17188568 -68507186 - AluJo SINE Alu -20 292 1 2330 116 0 0 chr15 17188577 17188878 -68506876 - AluSx SINE Alu -11 301 1 239 338 0 0 chr15 17188880 17188951 -68506803 + L1MD2 LINE L1 6201 6271 -88 2050 147 0 0 chr15 17188988 17189287 -68506467 - AluSg SINE Alu -11 299 1 1539 115 5 5 chr15 17189287 17189504 -68506250 - AluSg/x SINE Alu -8 302 85 2193 105 14 0 chr15 17189504 17189799 -68505955 - AluSx SINE Alu -12 300 1 1746 158 37 0 chr15 17189844 17190145 -68505609 - AluJb SINE Alu 0 311 1 1003 161 17 0 chr15 17190643 17190817 -68504937 - AluSg/x SINE Alu -7 303 127 276 375 0 42 chr15 17191120 17191240 -68504514 + polypurine Low_complexity Low_complexity 1 115 0 223 274 21 32 chr15 17191245 17191340 -68504414 + GA-rich Low_complexity Low_complexity 3 96 0 964 227 38 14 chr15 17191504 17191795 -68503959 - AluSq SINE Alu -5 298 1 333 338 139 20 chr15 17191801 17192002 -68503752 + L2 LINE L2 1007 1231 -2083 613 90 0 0 chr15 17192004 17192082 -68503672 + AluSx SINE Alu 2 79 -233 2744 52 0 0 chr15 17192083 17192393 -68503361 + AluY SINE Alu 1 310 -1 1889 100 0 0 chr15 17192409 17192650 -68503104 + AluSx SINE Alu 66 306 -4 378 313 145 4 chr15 17192855 17193082 -68502672 + L2 LINE L2 1466 1724 -1590 189 277 158 0 chr15 17193123 17193224 -68502530 - MIR SINE MIR -128 134 18 800 155 9 0 chr15 17193236 17193352 -68502402 + AluJ SINE Alu 1 117 -195 676 206 8 8 chr15 17193384 17193515 -68502239 + AluJ SINE Alu 118 248 -64 239 270 95 0 chr15 17193515 17193589 -68502165 + L2 LINE L2 3232 3312 -1 1852 157 10 13 chr15 17193917 17194216 -68501538 + AluJo SINE Alu 3 300 -12 2398 96 0 10 chr15 17194990 17195304 -68500450 - AluSx SINE Alu -1 311 1 2120 119 23 3 chr15 17195362 17195665 -68500089 - AluSx SINE Alu -3 309 1 2457 77 0 0 chr15 17195730 17196028 -68499726 - AluY SINE Alu -13 298 1 754 189 0 0 chr15 17196117 17196249 -68499505 - FLAM_A SINE Alu 0 133 2 817 152 0 23 chr15 17197014 17197146 -68498608 + FLAM_C SINE Alu 1 129 -14 2309 107 0 0 chr15 17197201 17197501 -68498253 + AluSg1 SINE Alu 4 303 -6 362 223 64 0 chr15 17198262 17198356 -68497398 - MIR SINE MIR -40 222 123 1951 110 70 0 chr15 17198497 17198770 -68496984 - AluSx SINE Alu -20 292 1 2515 75 0 7 chr15 17198777 17199084 -68496670 - AluY SINE Alu -6 305 1 2163 107 20 3 chr15 17199183 17199482 -68496272 + AluSp SINE Alu 1 304 -9 1788 161 31 0 chr15 17200072 17200358 -68495396 + AluJb SINE Alu 1 295 -17 2142 131 13 0 chr15 17200358 17200664 -68495090 + AluSx SINE Alu 1 310 -2 2300 105 0 7 chr15 17201177 17201481 -68494273 - AluSx SINE Alu -10 302 1 1204 200 89 32 chr15 17201497 17201673 -68494081 + L1MB7 LINE L1 2182 2347 -3799 2505 67 0 0 chr15 17201673 17201970 -68493784 + AluY SINE Alu 1 297 -14 1204 200 89 32 chr15 17201970 17202163 -68493591 + L1MB7 LINE L1 2347 2572 -3574 3375 206 52 67 chr15 17202218 17202265 -68493489 + L1MB7 LINE L1 3998 4044 -2102 1572 108 125 4 chr15 17202265 17202505 -68493249 - AluSx SINE Alu -43 269 1 3375 206 52 67 chr15 17202505 17203022 -68492732 + L1MB7 LINE L1 4044 4567 -1579 2095 128 0 3 chr15 17203022 17203312 -68492442 + AluSx SINE Alu 1 289 -23 3375 206 52 67 chr15 17203312 17203638 -68492116 + L1MB7 LINE L1 4567 4875 -1271 665 175 0 32 chr15 17203638 17203764 -68491990 - FLAM_C SINE Alu -10 123 2 3375 206 52 67 chr15 17203764 17203894 -68491860 + L1MB7 LINE L1 4875 5005 -1141 2716 133 64 92 chr15 17203883 17204252 -68491502 + L1MB3 LINE L1 5568 5915 -268 * 2247 118 0 3 chr15 17204252 17204565 -68491189 + AluSq SINE Alu 1 312 -1 2716 133 64 92 chr15 17204565 17204818 -68490936 + L1MB3 LINE L1 5915 6173 -10 3937 184 51 13 chr15 17204830 17205957 -68489797 + L1MB7 LINE L1 4997 6171 -13 190 240 93 27 chr15 17206512 17206587 -68489167 + L2 LINE L2 3188 3267 -46 932 161 63 0 chr15 17206625 17206799 -68488955 - AluJo SINE Alu -8 304 120 380 123 0 0 chr15 17206800 17206857 -68488897 - Alu SINE Alu 0 300 244 25 0 0 0 chr15 17206984 17207009 -68488745 + AT_rich Low_complexity Low_complexity 1 25 0 576 237 68 39 chr15 17207009 17207317 -68488437 - AluYb8 SINE Alu 0 318 2 238 250 14 27 chr15 17207473 17207638 -68488116 + A-rich Low_complexity Low_complexity 1 217 0 34 0 0 0 chr15 17207664 17207698 -68488056 + AT_rich Low_complexity Low_complexity 1 34 0 1351 132 26 116 chr15 17207864 17208060 -68487694 - AluYb8 SINE Alu -16 302 143 2882 19 0 6 chr15 17208060 17208379 -68487375 - AluYb8 SINE Alu -1 317 1 1351 132 26 116 chr15 17208379 17208492 -68487262 - AluYb8 SINE Alu -175 143 21 21 36 0 0 chr15 17208575 17208603 -68487151 + AT_rich Low_complexity Low_complexity 1 28 0 756 159 41 108 chr15 17208739 17208887 -68486867 + MER5A DNA MER1_type 5 138 -51 2269 99 10 0 chr15 17208887 17209191 -68486563 + AluSx SINE Alu 1 307 -5 756 159 41 108 chr15 17209191 17209237 -68486517 + MER5A DNA MER1_type 138 186 -3 342 278 35 56 chr15 17209315 17209769 -68485985 - MER5A DNA MER1_type -6 183 43 2129 109 0 32 chr15 17209423 17209734 -68486020 - AluSq SINE Alu -12 301 1 195 296 40 59 chr15 17209734 17209796 -68485958 + MER5A DNA MER1_type 126 188 -1 2584 44 3 3 chr15 17209813 17210110 -68485644 + AluY SINE Alu 1 297 -14 866 111 0 72 chr15 17210290 17210443 -68485311 - FLAM_C SINE Alu -1 142 1 1809 127 3 34 chr15 17210479 17210797 -68484957 - AluSg SINE Alu 0 309 1 1597 124 0 0 chr15 17211156 17211374 -68484380 - AluSq SINE Alu -93 220 3 1857 149 38 3 chr15 17211398 17211687 -68484067 + AluSg SINE Alu 1 299 -11 2448 59 7 10 chr15 17212307 17212614 -68483140 + AluY SINE Alu 1 306 -5 1555 176 28 11 chr15 17213444 17213728 -68482026 + AluJo SINE Alu 1 289 -23 1306 87 5 5 chr15 17213728 17213913 -68481841 - AluY SINE Alu -2 309 125 282 286 59 8 chr15 17214471 17214590 -68481164 - AluJb SINE Alu -157 145 21 923 241 23 47 chr15 17214638 17214895 -68480859 + AluJb SINE Alu 7 257 -55 1446 150 12 16 chr15 17215034 17215287 -68480467 - AluY SINE Alu -59 252 1 1599 200 3 14 chr15 17216263 17216558 -68479196 + AluJb SINE Alu 7 292 -20 2287 116 3 0 chr15 17216827 17217130 -68478624 - AluSq SINE Alu -3 310 7 1845 132 26 0 chr15 17217169 17217435 -68478319 - AluSx SINE Alu -24 288 16 * 2036 73 16 0 chr15 17217433 17217705 -68478049 + AluSp SINE Alu 33 308 0 1636 167 17 31 chr15 17217714 17218008 -68477746 + AluJb SINE Alu 1 290 -22 2089 114 3 57 chr15 17218236 17218370 -68477384 + AluSx SINE Alu 1 141 -171 2242 96 3 14 chr15 17218370 17218662 -68477092 + AluSp SINE Alu 1 289 -24 2089 114 3 57 chr15 17218662 17218842 -68476912 + AluSx SINE Alu 141 298 -14 2249 104 7 10 chr15 17219435 17219732 -68476022 + AluSx SINE Alu 1 296 -16 1910 144 0 49 chr15 17219806 17220112 -68475642 - AluSq SINE Alu -22 291 1 1869 101 8 0 chr15 17221317 17221564 -68474190 - AluSp SINE Alu -11 302 54 225 278 157 19 chr15 17221853 17221961 -68473793 - MER5A DNA MER1_type -30 159 37 2271 102 20 3 chr15 17222570 17222863 -68472891 + AluSx SINE Alu 1 298 -14 2028 112 7 30 chr15 17224820 17225115 -68470639 + AluSx SINE Alu 1 288 -24 1887 151 28 0 chr15 17225269 17225560 -68470194 + AluSx SINE Alu 1 299 -13 674 177 16 0 chr15 17225695 17225819 -68469935 + FLAM_C SINE Alu 5 130 -3 2338 98 10 3 chr15 17226086 17226392 -68469362 - AluSx SINE Alu -4 308 1 1596 136 87 45 chr15 17226486 17226773 -68468981 - AluJo SINE Alu -13 299 1 2045 146 7 0 chr15 17227604 17227899 -68467855 + AluSx SINE Alu 1 297 -15 205 244 0 0 chr15 17229382 17229423 -68466331 + GA-rich Low_complexity Low_complexity 4 44 0 824 127 0 0 chr15 17229870 17229988 -68465766 - AluSx SINE Alu -4 305 188 * 1075 105 0 14 chr15 17229987 17230130 -68465624 - AluSx SINE Alu -170 142 2 2510 59 0 7 chr15 17230697 17231001 -68464753 + AluY SINE Alu 1 302 -9 2258 113 0 0 chr15 17233067 17233359 -68462395 - AluSx SINE Alu -16 296 5 2096 132 3 0 chr15 17233371 17233666 -68462088 - AluSx SINE Alu -16 296 1 1683 171 14 11 chr15 17233697 17234003 -68461751 + AluJo SINE Alu 1 307 0 508 164 23 4 chr15 17234439 17234537 -68461217 + Tigger3(Golem) DNA MER2_type 15 111 -2918 1434 159 102 19 chr15 17234537 17234674 -68461080 - AluJo SINE Alu -18 294 170 2139 93 0 0 chr15 17234674 17234943 -68460811 - AluSx SINE Alu -3 309 41 1434 159 102 19 chr15 17234943 17235069 -68460685 - AluJo SINE Alu -142 170 9 2277 81 54 3 chr15 17237711 17238006 -68457748 + AluSg SINE Alu 1 310 0 238 339 15 77 chr15 17238200 17238330 -68457424 + MIR3 SINE MIR 56 177 -31 2451 53 3 56 chr15 17238591 17238911 -68456843 - AluSx SINE Alu -9 303 1 183 80 0 0 chr15 17239279 17239304 -68456450 + (CGGG)n Simple_repeat Simple_repeat 4 28 0 2069 119 3 20 chr15 17240075 17240377 -68455377 - AluSp SINE Alu -16 297 1 235 387 65 0 chr15 17240382 17240537 -68455217 + L2 LINE L2 3107 3271 -1 1312 153 0 5 chr15 17241083 17241279 -68454475 + AluSg SINE Alu 1 195 -115 571 49 0 49 chr15 17241280 17241362 -68454392 + AluSq/x SINE Alu 66 143 -169 1320 188 29 8 chr15 17241362 17241601 -68454153 - AluJo SINE Alu -68 244 1 1821 182 25 0 chr15 17241624 17241910 -68453844 - AluJo SINE Alu -19 293 1 671 154 0 17 chr15 17241920 17242037 -68453717 - FLAM_C SINE Alu -18 125 11 367 269 78 0 chr15 17242060 17242201 -68453553 - L1ME LINE L1 -408 5762 5611 32 26 0 0 chr15 17242272 17242311 -68453443 + AT_rich Low_complexity Low_complexity 1 39 0 470 283 24 24 chr15 17242360 17242565 -68453189 + AluY SINE Alu 2 206 -105 525 240 34 28 chr15 17242844 17243023 -68452731 - AluSg/x SINE Alu -1 308 129 1762 177 0 0 chr15 17243250 17243549 -68452205 - AluSc SINE Alu -4 305 7 185 258 65 48 chr15 17243648 17243710 -68452044 + MIR3 SINE MIR 125 187 -21 293 279 9 27 chr15 17243775 17243886 -68451868 - MIR SINE MIR -73 135 27 183 301 68 58 chr15 17244165 17244268 -68451486 - MIR SINE MIR -62 146 43 960 198 67 67 chr15 17245206 17245339 -68450415 + AluJo SINE Alu 3 135 -167 2561 47 3 3 chr15 17245339 17245638 -68450116 + AluY SINE Alu 1 299 -12 960 198 67 67 chr15 17245638 17245802 -68449952 + AluJo SINE Alu 134 300 -2 1025 59 15 0 chr15 17246721 17246856 -68448898 + AluY SINE Alu 173 309 -2 2321 108 0 16 chr15 17247216 17247532 -68448222 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr15 17247948 17247980 -68447774 + AT_rich Low_complexity Low_complexity 1 32 0 843 130 0 0 chr15 17247980 17248103 -68447651 + FLAM_C SINE Alu 1 123 -10 204 40 0 0 chr15 17248107 17248132 -68447622 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2078 109 11 3 chr15 17248170 17248477 -68447277 + AluSx SINE Alu 1 309 0 2409 77 0 0 chr15 17248487 17248796 -68446958 + AluSq SINE Alu 1 309 0 1144 144 0 23 chr15 17249457 17249631 -68446123 + AluJo SINE Alu 1 170 -142 306 304 13 76 chr15 17249695 17249817 -68445937 + MIR3 SINE MIR 46 157 -51 2465 47 20 3 chr15 17249817 17250116 -68445638 - AluY SINE Alu -7 304 1 306 304 13 76 chr15 17250116 17250151 -68445603 + MIR3 SINE MIR 157 193 -15 787 262 90 4 chr15 17250642 17250875 -68444879 - MIR SINE MIR -3 259 7 2331 87 3 7 chr15 17251099 17251399 -68444355 - AluY SINE Alu -12 299 1 691 197 8 0 chr15 17251400 17251532 -68444222 - AluJo SINE Alu -178 134 2 311 167 13 90 chr15 17252476 17252554 -68443200 - L2 LINE L2 -4 3309 3238 878 123 0 0 chr15 17253300 17253430 -68442324 - FLAM_C SINE Alu -1 132 3 400 347 21 6 chr15 17254271 17254472 -68441282 - MIR SINE MIR -57 205 3 2152 112 0 7 chr15 17254669 17254999 -68440755 - AluSq SINE Alu 0 313 1 835 213 85 5 chr15 17255022 17255210 -68440544 - L1MDa LINE L1 -5985 555 353 526 195 34 0 chr15 17255239 17255357 -68440397 + MIR SINE MIR 87 208 -54 2209 101 39 0 chr15 17255584 17255870 -68439884 - AluSq SINE Alu -16 297 1 2010 158 3 0 chr15 17255935 17256233 -68439521 - AluSx SINE Alu -13 299 1 1051 182 6 0 chr15 17257373 17257554 -68438200 - AluJo SINE Alu -9 303 122 1648 194 10 7 chr15 17257573 17257872 -68437882 - AluJo SINE Alu -11 301 2 2358 82 0 3 chr15 17257881 17258173 -68437581 - AluY SINE Alu -18 293 3 32 0 0 0 chr15 17258230 17258262 -68437492 + AT_rich Low_complexity Low_complexity 1 32 0 2123 132 0 0 chr15 17258294 17258582 -68437172 - AluSx SINE Alu -9 303 16 2173 110 3 19 chr15 17258640 17258950 -68436804 - AluSx SINE Alu -7 305 1 2144 107 7 0 chr15 17258962 17259282 -68436472 - AluSx SINE Alu 0 322 1 509 260 157 2 chr15 17259283 17259515 -68436239 - L1MC/D LINE L1 -398 5723 5511 190 255 76 125 chr15 17260756 17260875 -68434879 - MIR SINE MIR 0 262 154 1693 155 32 18 chr15 17260875 17261159 -68434595 - AluSx SINE Alu -24 288 1 190 255 76 125 chr15 17261159 17261223 -68434531 - MIR SINE MIR -108 154 88 2467 89 0 0 chr15 17261264 17261567 -68434187 + AluSg1 SINE Alu 1 303 -6 903 157 30 30 chr15 17261603 17261769 -68433985 - FRAM SINE Alu 0 166 1 523 236 0 14 chr15 17261863 17262011 -68433743 - L1MB8 LINE L1 0 6178 6033 2431 77 3 0 chr15 17262081 17262378 -68433376 - AluSq SINE Alu -15 298 1 180 176 0 0 chr15 17262514 17262548 -68433206 + A-rich Low_complexity Low_complexity 1 34 0 2381 99 3 0 chr15 17266555 17266858 -68428896 + AluSx SINE Alu 1 304 -8 651 227 86 56 chr15 17268046 17268244 -68427510 + MER3 DNA MER1_type 1 204 -5 22 0 0 0 chr15 17271923 17271945 -68423809 + AT_rich Low_complexity Low_complexity 1 22 0 324 286 118 0 chr15 17272751 17272870 -68422884 - MIR SINE MIR -46 216 84 543 134 49 0 chr15 17272951 17273033 -68422721 + AluJb SINE Alu 209 294 -18 949 157 18 12 chr15 17274216 17274382 -68421372 + FRAM SINE Alu 1 167 -9 1005 189 23 46 chr15 17274382 17274642 -68421112 + L1MB8 LINE L1 5918 6171 -7 267 281 83 21 chr15 17274654 17274750 -68421004 - MER5A DNA MER1_type -25 164 63 220 175 125 50 chr15 17274919 17274999 -68420755 - MIR3 SINE MIR -25 183 98 23 33 0 0 chr15 17275844 17275874 -68419880 + GC_rich Low_complexity Low_complexity 1 30 0 2318 83 3 0 chr15 17276676 17276988 -68418766 - AluSp SINE Alu 0 313 1 2304 57 6 22 chr15 17277298 17277614 -68418140 + AluY SINE Alu 1 311 0 506 253 12 12 chr15 17277625 17277787 -68417967 + L1ME LINE L1 5273 5434 -728 569 198 0 0 chr15 17277839 17277935 -68417819 + FRAM SINE Alu 5 100 -76 2272 88 3 0 chr15 17278184 17278479 -68417275 + AluSx SINE Alu 1 296 -16 660 186 0 0 chr15 17278509 17278622 -68417132 + AluSg/x SINE Alu 195 307 -3 1571 161 54 14 chr15 17279749 17279879 -68415875 + AluSx SINE Alu 7 130 -182 1892 119 6 41 chr15 17279879 17280198 -68415556 + AluSx SINE Alu 1 308 -4 1571 161 54 14 chr15 17280198 17280347 -68415407 + AluSx SINE Alu 130 297 -15 1464 151 81 25 chr15 17280429 17280713 -68415041 - AluJo SINE Alu -12 300 1 2127 78 11 3 chr15 17280722 17281005 -68414749 - AluY SINE Alu -15 296 12 558 315 67 55 chr15 17281044 17281371 -68414383 + L2 LINE L2 2941 3271 -1 269 239 15 0 chr15 17281418 17281485 -68414269 + MIR3 SINE MIR 88 155 -53 1685 112 108 0 chr15 17281520 17281779 -68413975 - AluSg1 SINE Alu -13 296 10 23 0 0 0 chr15 17281783 17281806 -68413948 + AT_rich Low_complexity Low_complexity 1 23 0 550 200 30 52 chr15 17281899 17282034 -68413720 + FLAM_C SINE Alu 1 132 -1 219 225 0 0 chr15 17282043 17282083 -68413671 + polypurine Low_complexity Low_complexity 1 40 0 229 275 25 62 chr15 17282205 17282285 -68413469 + L2 LINE L2 3193 3269 -3 2200 89 10 0 chr15 17282384 17282677 -68413077 + AluSg SINE Alu 1 296 -14 307 294 25 50 chr15 17282752 17282912 -68412842 + L1ME LINE L1 5507 5662 -459 888 259 107 10 chr15 17282925 17283214 -68412540 - L2 LINE L2 -2 3311 2995 1161 215 24 14 chr15 17283214 17283537 -68412217 + L1MB3 LINE L1 5339 5661 -522 1443 178 20 41 chr15 17283537 17283830 -68411924 - AluJb SINE Alu -19 293 7 1676 192 0 0 chr15 17283868 17284154 -68411600 + AluJb SINE Alu 12 297 -15 2858 151 2 47 chr15 17284159 17284179 -68411575 + L1MB3 LINE L1 5662 5681 -502 2248 96 7 0 chr15 17284179 17284481 -68411273 - AluSq SINE Alu -9 304 1 2152 127 0 0 chr15 17284483 17284791 -68410963 - AluSx SINE Alu -4 308 1 2858 151 2 47 chr15 17284791 17285305 -68410449 + L1MB3 LINE L1 5682 6175 -8 710 265 131 11 chr15 17285312 17285580 -68410174 - L2 LINE L2 -412 2902 2603 2450 48 0 19 chr15 17285707 17286019 -68409735 + AluY SINE Alu 1 306 -5 272 196 93 56 chr15 17286320 17286427 -68409327 - MER58C DNA MER1_type -1 214 104 571 183 119 0 chr15 17286480 17286606 -68409148 - L1M3 LINE L1 -549 5631 5491 805 176 0 0 chr15 17286608 17286744 -68409010 - FRAM SINE Alu -1 175 40 817 146 6 53 chr15 17286778 17286840 -68408914 - L1M3 LINE L1 -683 5495 5432 2068 111 17 0 chr15 17286840 17287137 -68408617 - AluSx SINE Alu -10 302 1 817 146 6 53 chr15 17287137 17287245 -68408509 - L1M3 LINE L1 -746 5432 5333 639 179 0 0 chr15 17287249 17287355 -68408399 - FRAM SINE Alu -1 175 70 350 179 54 89 chr15 17287401 17287474 -68408280 - MER58C DNA MER1_type -99 116 47 1767 108 104 0 chr15 17287474 17287742 -68408012 + AluSg1 SINE Alu 1 296 -13 350 179 54 89 chr15 17287742 17287780 -68407974 - MER58C DNA MER1_type -168 47 9 263 226 16 0 chr15 17287782 17287844 -68407910 - MIR SINE MIR -58 150 88 558 315 67 55 chr15 17287891 17288218 -68407536 - L2 LINE L2 -1 3271 2941 2282 48 61 0 chr15 17288244 17288537 -68407217 + AluY SINE Alu 1 311 0 929 335 45 16 chr15 17288633 17288939 -68406815 - L2 LINE L2 -642 2672 2349 2127 110 7 0 chr15 17288939 17289239 -68406515 - AluSx SINE Alu -10 302 1 929 335 45 16 chr15 17289239 17289359 -68406395 - L2 LINE L2 -965 2349 2234 287 238 230 16 chr15 17289422 17289548 -68406206 + MIR3 SINE MIR 4 156 -52 1743 167 7 3 chr15 17289591 17289896 -68405858 + AluJb SINE Alu 1 306 -6 1488 187 20 23 chr15 17290741 17291040 -68404714 - AluJo SINE Alu -14 298 1 1603 153 18 64 chr15 17291067 17291393 -68404361 + AluJo SINE Alu 1 311 -1 2158 107 0 0 chr15 17291490 17291781 -68403973 + AluSx SINE Alu 1 291 -21 2230 99 0 0 chr15 17291866 17292168 -68403586 + AluSg SINE Alu 1 302 -8 1243 87 0 0 chr15 17292168 17292329 -68403425 + AluSg/x SINE Alu 132 292 -18 2143 77 40 3 chr15 17292331 17292631 -68403123 + AluY SINE Alu 1 311 0 304 300 25 0 chr15 17292893 17292973 -68402781 + LTR16C LTR ERVL 97 178 -313 2426 68 7 0 chr15 17292980 17293287 -68402467 - AluSg SINE Alu -1 309 1 447 70 0 0 chr15 17293301 17293381 -68402373 - Alu SINE Alu 0 302 223 180 158 0 0 chr15 17294473 17294511 -68401243 + (CAGGG)n Simple_repeat Simple_repeat 3 40 0 259 283 160 13 chr15 17294679 17294836 -68400918 + MIR SINE MIR 15 191 -62 484 232 91 95 chr15 17295255 17295496 -68400258 + MIR SINE MIR 23 262 0 540 115 0 0 chr15 17297058 17297136 -68398618 + MADE1 DNA Mariner 1 78 -2 837 252 58 21 chr15 17297682 17297924 -68397830 + MIR SINE MIR 2 252 -10 581 183 7 88 chr15 17297956 17298093 -68397661 - MER3 DNA MER1_type -83 126 1 999 219 48 5 chr15 17298109 17298319 -68397435 + MER20 DNA MER1_type 1 219 0 546 261 55 50 chr15 17298319 17298363 -68397391 - MIR SINE MIR -55 207 165 675 142 39 39 chr15 17298363 17298490 -68397264 + FLAM_C SINE Alu 1 127 -6 546 261 55 50 chr15 17298490 17298644 -68397110 - MIR SINE MIR -97 165 8 2392 90 0 0 chr15 17299037 17299347 -68396407 + AluSg SINE Alu 1 310 0 2230 98 0 22 chr15 17303202 17303518 -68392236 + AluSx SINE Alu 1 309 -3 2004 172 149 54 chr15 17303519 17303561 -68392193 + L1MC1 LINE L1 5241 5278 -868 1899 129 18 0 chr15 17303561 17303847 -68391907 + AluSx SINE Alu 1 291 -21 1996 128 14 0 chr15 17303847 17304143 -68391611 + AluSx SINE Alu 1 301 -11 2004 172 149 54 chr15 17304143 17304385 -68391369 + L1MC1 LINE L1 5278 5496 -650 1995 127 10 3 chr15 17304385 17304685 -68391069 - AluJb SINE Alu -10 302 1 2004 172 149 54 chr15 17304685 17304782 -68390972 + L1MC1 LINE L1 5496 5213 -933 2507 49 3 0 chr15 17304782 17305086 -68390668 + AluY SINE Alu 1 305 -6 2004 172 149 54 chr15 17305086 17305299 -68390455 + L1MC1 LINE L1 5212 5403 -743 251 239 0 56 chr15 17305315 17305386 -68390368 + AluYb8 SINE Alu 236 302 -6 2038 159 37 15 chr15 17305393 17305802 -68389952 + L1MC1 LINE L1 5901 6318 -15 856 174 68 174 chr15 17305806 17306081 -68389673 - Charlie1a DNA MER1_type -2415 346 122 1692 97 48 12 chr15 17306081 17306329 -68389425 + AluSx SINE Alu 43 299 -13 856 174 68 174 chr15 17306329 17306437 -68389317 - Charlie1a DNA MER1_type -2639 122 4 2416 64 3 0 chr15 17306641 17306939 -68388815 - AluSp SINE Alu -14 299 1 250 180 40 0 chr15 17306942 17306992 -68388762 - Alu SINE Alu -10 292 241 1874 117 3 30 chr15 17307807 17308107 -68387647 + AluSx SINE Alu 20 311 -1 705 170 15 37 chr15 17308122 17308257 -68387497 + FLAM_C SINE Alu 2 133 0 319 281 26 82 chr15 17308257 17308274 -68387480 + L1MEc LINE L1 1003 1019 -5377 2011 117 13 3 chr15 17308274 17308574 -68387180 + AluSx SINE Alu 1 303 -9 319 281 26 82 chr15 17308574 17308823 -68386931 + L1MEc LINE L1 1019 1254 -5142 2079 128 0 0 chr15 17308864 17309168 -68386586 + AluSx SINE Alu 1 304 -8 887 107 8 46 chr15 17309214 17309345 -68386409 + FLAM_C SINE Alu 1 126 -7 332 113 0 0 chr15 17309349 17309411 -68386343 + Tigger3(Golem) DNA MER2_type 2506 2567 -462 927 197 0 117 chr15 17309421 17309670 -68386084 + AluJo SINE Alu 1 220 -92 2135 94 10 7 chr15 17309674 17309971 -68385783 - AluSp SINE Alu -15 298 1 1625 135 47 44 chr15 17310030 17310184 -68385570 - AluJb SINE Alu -13 299 142 2177 97 20 0 chr15 17310184 17310483 -68385271 - AluSq SINE Alu -8 305 1 1625 135 47 44 chr15 17310483 17310625 -68385129 - AluJb SINE Alu -170 142 2 2513 125 75 7 chr15 17310631 17311056 -68384698 + Tigger3(Golem) DNA MER2_type 2575 3028 -1 793 126 39 24 chr15 17311105 17311232 -68384522 + FLAM_C SINE Alu 5 133 0 1820 160 10 3 chr15 17311595 17311888 -68383866 - AluJb SINE Alu -17 295 1 549 280 142 19 chr15 17311969 17312221 -68383533 - L2 LINE L2 -1292 2022 1736 2293 108 0 3 chr15 17312221 17312535 -68383219 + AluSq SINE Alu 1 313 0 357 294 157 13 chr15 17313631 17313784 -68381970 + MER5B DNA MER1_type 4 178 0 618 296 38 14 chr15 17313798 17313905 -68381849 + MIR SINE MIR 45 148 -114 894 167 0 0 chr15 17313905 17314037 -68381717 + FLAM_C SINE Alu 1 132 -1 618 296 38 14 chr15 17314037 17314142 -68381612 + MIR SINE MIR 148 262 0 840 182 62 72 chr15 17314342 17314446 -68381308 + MER3 DNA MER1_type 3 106 -103 2166 102 13 0 chr15 17314446 17314750 -68381004 + AluSp SINE Alu 1 308 -5 840 182 62 72 chr15 17314750 17314854 -68380900 + MER3 DNA MER1_type 106 209 0 1772 157 13 16 chr15 17314859 17315210 -68380544 + AluJb SINE Alu 1 350 0 2139 106 0 3 chr15 17316803 17317104 -68378650 - AluSg SINE Alu -10 300 1 878 153 0 0 chr15 17317123 17317254 -68378500 + FLAM_C SINE Alu 1 131 -2 1178 185 22 63 chr15 17317279 17317380 -68378374 + AluJo SINE Alu 37 141 -171 2312 106 0 0 chr15 17317380 17317691 -68378063 + AluSx SINE Alu 1 311 -1 1178 185 22 63 chr15 17317691 17317859 -68377895 + AluJo SINE Alu 141 295 -17 313 313 209 30 chr15 17317955 17318156 -68377598 + MIR SINE MIR 20 256 -6 200 344 0 0 chr15 17318435 17318496 -68377258 - L2 LINE L2 0 3272 3212 979 205 11 0 chr15 17318517 17318646 -68377108 + AluJo SINE Alu 5 135 -177 2358 92 6 19 chr15 17318646 17318988 -68376766 + AluSq SINE Alu 1 313 0 671 298 85 58 chr15 17318992 17319688 -68376066 - L2 LINE L2 -69 3203 2495 2599 57 3 16 chr15 17319770 17320087 -68375667 + AluSp SINE Alu 1 313 0 2445 76 7 0 chr15 17320533 17320837 -68374917 + AluY SINE Alu 1 306 -5 456 263 56 62 chr15 17320841 17320895 -68374859 - L1ME4a LINE L1 -11 6110 6057 2017 98 58 4 chr15 17320895 17321169 -68374585 + AluSg SINE Alu 1 289 -21 456 263 56 62 chr15 17321169 17321293 -68374461 - L1ME4a LINE L1 -64 6057 5933 2293 106 3 0 chr15 17321306 17321320 -68374434 - AluSx SINE Alu -8 304 292 799 21 27 64 chr15 17321320 17321507 -68374247 + (TA)n Simple_repeat Simple_repeat 1 180 0 2293 106 3 0 chr15 17321507 17321795 -68373959 - AluSx SINE Alu -20 292 1 2079 104 35 10 chr15 17322080 17322234 -68373520 - AluSx SINE Alu -16 296 130 2557 72 0 3 chr15 17322234 17322540 -68373214 - AluSq SINE Alu -8 305 1 2079 104 35 10 chr15 17322540 17322674 -68373080 - AluSx SINE Alu -182 130 1 461 279 139 0 chr15 17322714 17322915 -68372839 + MER112 DNA MER1_type 9 237 -23 523 310 35 13 chr15 17322932 17323158 -68372596 - L1ME4a LINE L1 -340 5781 5551 1358 239 92 43 chr15 17323203 17323713 -68372041 - MLT1F1 LTR MaLR -32 535 1 500 255 43 27 chr15 17323738 17323922 -68371832 - L1MA7 LINE L1 -116 6175 5989 1451 57 21 0 chr15 17323970 17324189 -68371565 + L1PA10 LINE L1 5953 6175 0 2396 92 13 0 chr15 17324196 17324500 -68371254 + AluSp SINE Alu 5 312 -1 2403 96 3 0 chr15 17324540 17324833 -68370921 + AluSp SINE Alu 1 294 -19 1863 146 125 0 chr15 17324837 17325180 -68370574 - MER57A LTR ERV1 -17 386 1 1908 159 3 3 chr15 17325232 17325521 -68370233 + AluJo SINE Alu 1 289 -23 600 240 130 66 chr15 17325598 17326108 -68369646 - MLT1G1 LTR MaLR 0 595 2 2125 148 0 3 chr15 17326360 17326663 -68369091 + AluSx SINE Alu 1 302 -10 221 229 156 37 chr15 17326760 17326862 -68368892 + MIR SINE MIR 31 148 -60 2365 86 0 0 chr15 17326862 17327177 -68368577 - AluSc SINE Alu 0 309 1 720 136 85 0 chr15 17327193 17327311 -68368443 - FLAM_C SINE Alu -5 128 1 236 340 53 20 chr15 17327660 17327810 -68367944 - L1ME4a LINE L1 -11 6110 5956 2028 146 0 13 chr15 17327933 17328242 -68367512 - AluJo SINE Alu -7 305 1 4060 110 32 14 chr15 17328242 17328890 -68366864 - L1PA16 LINE L1 -11 6155 5496 198 71 0 0 chr15 17328891 17328919 -68366835 + (TTG)n Simple_repeat Simple_repeat 2 29 0 610 234 81 62 chr15 17328921 17329153 -68366601 - MIR SINE MIR -6 256 6 749 229 65 16 chr15 17329382 17329627 -68366127 + MIR SINE MIR 5 261 -1 2151 111 11 0 chr15 17329713 17330031 -68365723 + AluSx SINE Alu 1 321 0 26 30 0 0 chr15 17331140 17331173 -68364581 + GC_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 17331798 17331826 -68363928 + GC_rich Low_complexity Low_complexity 1 28 0 1926 110 0 71 chr15 17332358 17332668 -68363086 - AluSq SINE Alu 0 313 26 413 95 0 32 chr15 17332703 17332766 -68362988 - 7SK RNA RNA -132 61 1 375 287 22 15 chr15 17333621 17333757 -68361997 - MIR SINE MIR -79 183 47 205 250 0 0 chr15 17334744 17334784 -68360970 + C-rich Low_complexity Low_complexity 3 42 0 637 298 37 0 chr15 17335556 17335747 -68360007 + L1MC4a LINE L1 5558 5755 -2053 295 243 64 50 chr15 17335857 17335997 -68359757 + L1MC4a LINE L1 5754 5895 -1913 1637 185 22 35 chr15 17336148 17336188 -68359566 - AluJb SINE Alu -2 310 271 2471 76 3 0 chr15 17336188 17336491 -68359263 + AluY SINE Alu 1 304 -7 1637 185 22 35 chr15 17336491 17336764 -68358990 - AluJb SINE Alu -41 271 1 461 269 31 8 chr15 17336895 17337025 -68358729 + MIR SINE MIR 21 153 -109 1082 213 56 4 chr15 17337066 17337283 -68358471 - MER58B DNA MER1_type -2079 341 108 2478 74 10 3 chr15 17337283 17337593 -68358161 - AluSp SINE Alu -1 312 1 1082 213 56 4 chr15 17337593 17337624 -68358130 - MER58B DNA MER1_type -2312 108 80 2306 99 7 3 chr15 17338369 17338673 -68357081 - AluSc SINE Alu -4 305 1 1322 196 152 44 chr15 17338899 17338961 -68356793 - MLT1D LTR MaLR -1 504 450 2221 113 0 0 chr15 17338961 17339268 -68356486 + AluSx SINE Alu 1 307 0 1322 196 152 44 chr15 17339268 17339659 -68356095 - MLT1D LTR MaLR -55 450 1 327 25 0 0 chr15 17339845 17339885 -68355869 + (TG)n Simple_repeat Simple_repeat 2 41 0 835 188 61 0 chr15 17339946 17340111 -68355643 + FAM SINE Alu 1 175 0 702 218 182 53 chr15 17342105 17342322 -68353432 + MER113 DNA MER1_type? 3 191 -330 1985 165 0 0 chr15 17342322 17342625 -68353129 + AluJb SINE Alu 2 304 -8 702 218 182 53 chr15 17342625 17342697 -68353057 + MER113 DNA MER1_type? 191 252 -269 777 152 8 0 chr15 17342697 17342822 -68352932 + FLAM_A SINE Alu 1 126 -7 702 218 182 53 chr15 17342822 17342889 -68352865 + MER113 DNA MER1_type? 252 406 -115 313 271 150 7 chr15 17343587 17343727 -68352027 + MER117 DNA MER1_type 14 173 -24 181 213 85 0 chr15 17345440 17345487 -68350267 - L2 LINE L2 -1 3312 3262 280 333 82 0 chr15 17345527 17345662 -68350092 - MIR SINE MIR -38 224 79 411 230 44 44 chr15 17345746 17345881 -68349873 - L1ME3A LINE L1 -9 6161 6027 224 323 16 0 chr15 17346348 17346410 -68349344 + L2 LINE L2 3199 3261 -11 221 309 15 0 chr15 17346612 17346680 -68349074 - L2 LINE L2 -56 3257 3189 2433 106 0 0 chr15 17347189 17347500 -68348254 + AluSx SINE Alu 1 311 -1 2496 152 49 24 chr15 17347507 17348013 -68347741 + L1MB3 LINE L1 5664 6182 -1 2362 100 3 0 chr15 17348220 17348520 -68347234 + AluSx SINE Alu 1 301 -11 371 269 90 45 chr15 17348655 17348811 -68346943 + Charlie8 DNA MER1_type 1 163 -2254 2192 108 0 23 chr15 17348941 17349246 -68346508 - AluSp SINE Alu -15 298 1 2319 90 7 0 chr15 17349871 17350171 -68345583 - AluSx SINE Alu -10 302 1 2187 96 0 26 chr15 17350530 17350832 -68344922 - AluY SINE Alu -11 300 7 185 258 65 48 chr15 17350931 17350993 -68344761 + MIR3 SINE MIR 125 187 -21 293 279 9 27 chr15 17351058 17351169 -68344585 - MIR SINE MIR -73 135 27 183 301 68 58 chr15 17351448 17351551 -68344203 - MIR SINE MIR -62 146 43 182 254 63 0 chr15 17352350 17352413 -68343341 + MIR3 SINE MIR 12 78 -130 2015 161 0 0 chr15 17352474 17352765 -68342989 + AluJb SINE Alu 1 291 -21 2355 105 0 19 chr15 17352768 17353082 -68342672 + AluSx SINE Alu 3 310 -2 2428 99 0 0 chr15 17353708 17354002 -68341752 - AluSx SINE Alu -18 294 1 526 282 90 104 chr15 17354441 17354674 -68341080 + L1ME4a LINE L1 5704 5939 -182 2230 112 7 0 chr15 17354674 17354970 -68340784 + AluSx SINE Alu 1 298 -14 526 282 90 104 chr15 17354970 17355052 -68340702 + L1ME4a LINE L1 5939 6021 -100 2366 86 7 0 chr15 17355052 17355343 -68340411 - AluSc SINE Alu -16 293 1 526 282 90 104 chr15 17355343 17355438 -68340316 + L1ME4a LINE L1 6021 6109 -12 1650 187 13 43 chr15 17355443 17355748 -68340006 + AluJo SINE Alu 1 296 -16 2386 107 0 0 chr15 17355749 17356049 -68339705 + AluSx SINE Alu 1 300 -12 1202 122 0 33 chr15 17356049 17356212 -68339542 + AluSg/x SINE Alu 134 292 -20 2625 68 0 0 chr15 17356212 17356523 -68339231 + AluY SINE Alu 1 311 0 1202 122 0 33 chr15 17356523 17356540 -68339214 + AluSg/x SINE Alu 292 308 -4 428 268 63 16 chr15 17357692 17357819 -68337935 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 17358057 17358133 -68337621 + (CA)n Simple_repeat Simple_repeat 1 76 0 2245 119 0 0 chr15 17358253 17358555 -68337199 + AluSg SINE Alu 1 302 -8 21 71 0 0 chr15 17361294 17361336 -68334418 + GC_rich Low_complexity Low_complexity 1 42 0 228 190 17 17 chr15 17361713 17361771 -68333983 + L1MC/D LINE L1 5856 5913 -1895 685 232 71 0 chr15 17361900 17362055 -68333699 + FRAM SINE Alu 1 166 0 576 161 9 36 chr15 17362062 17362174 -68333580 - Tigger2 DNA MER2_type -2 2716 2608 2345 92 0 22 chr15 17362174 17362488 -68333266 + AluSx SINE Alu 2 308 -4 1063 141 7 0 chr15 17362489 17362666 -68333088 + AluSg/x SINE Alu 133 310 0 2418 82 3 16 chr15 17362666 17362981 -68332773 + AluY SINE Alu 1 311 0 1180 93 0 0 chr15 17363011 17363151 -68332603 - AluSq/x SINE Alu -170 142 3 813 128 77 13 chr15 17363195 17363351 -68332403 - Tigger2 DNA MER2_type -270 2448 2283 1599 163 17 30 chr15 17363351 17363652 -68332102 - AluJo SINE Alu -15 297 1 390 162 15 0 chr15 17363664 17363732 -68332022 - Tigger2 DNA MER2_type -2649 69 1 2442 65 3 3 chr15 17364360 17364650 -68331104 + AluSx SINE Alu 3 292 -20 1610 166 30 4 chr15 17364707 17364978 -68330776 - AluSx SINE Alu 0 312 35 2876 13 0 13 chr15 17365319 17365633 -68330121 - AluYb8 SINE Alu -8 310 1 407 277 110 26 chr15 17365654 17365809 -68329945 + MIR3 SINE MIR 33 200 -8 423 56 0 0 chr15 17365859 17365913 -68329841 + (CA)n Simple_repeat Simple_repeat 2 55 0 332 82 0 0 chr15 17366389 17366438 -68329316 + L1MC3 LINE L1 6762 6810 -975 186 71 0 0 chr15 17366449 17366477 -68329277 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1649 149 36 58 chr15 17366486 17366794 -68328960 + AluJb SINE Alu 2 302 -10 201 74 0 0 chr15 17366992 17367019 -68328735 + (TG)n Simple_repeat Simple_repeat 2 28 0 2194 118 3 3 chr15 17367138 17367434 -68328320 - AluSx SINE Alu -16 296 1 2315 116 0 3 chr15 17367607 17367918 -68327836 + AluSx SINE Alu 1 310 -2 262 157 24 48 chr15 17368158 17368241 -68327513 + (TATAA)n Simple_repeat Simple_repeat 2 82 0 1752 179 3 7 chr15 17368322 17368624 -68327130 - AluJb SINE Alu -10 302 2 2208 118 7 0 chr15 17369013 17369317 -68326437 - AluSx SINE Alu 0 312 7 2225 94 3 0 chr15 17369338 17369645 -68326109 - AluSg SINE Alu -2 308 1 627 169 62 39 chr15 17369646 17369776 -68325978 - FLAM_A SINE Alu 0 133 1 240 207 52 0 chr15 17369778 17369836 -68325918 - L1ME LINE L1 -288 5876 5816 1019 148 33 6 chr15 17369847 17370030 -68325724 - AluJo SINE Alu -4 308 121 1386 169 89 28 chr15 17370032 17370069 -68325685 - L1ME LINE L1 -352 5812 5779 2025 127 0 0 chr15 17370069 17370369 -68325385 - AluSq SINE Alu -5 308 9 1386 169 89 28 chr15 17370369 17370657 -68325097 - L1ME LINE L1 -385 5779 5467 2142 105 7 0 chr15 17370657 17370952 -68324802 + AluSq SINE Alu 2 298 -15 2084 118 0 0 chr15 17370954 17371243 -68324511 + AluSg SINE Alu 1 289 -21 23 0 0 0 chr15 17371243 17371266 -68324488 + AT_rich Low_complexity Low_complexity 1 23 0 1577 124 0 4 chr15 17371322 17371556 -68324198 - AluSg SINE Alu -77 233 1 787 174 0 0 chr15 17371608 17371723 -68324031 + FLAM_C SINE Alu 2 116 -27 213 333 0 0 chr15 17371844 17371898 -68323856 - L2 LINE L2 0 3272 3219 1790 91 121 11 chr15 17372119 17372383 -68323371 - AluSg SINE Alu -17 293 1 229 294 0 59 chr15 17372413 17372498 -68323256 - MIR3 SINE MIR -39 169 90 375 180 0 8 chr15 17372707 17372719 -68323035 - AluJ/FLAM SINE Alu -224 78 67 1524 128 0 25 chr15 17372719 17372961 -68322793 - AluJo SINE Alu -5 307 72 2297 95 0 0 chr15 17372961 17373265 -68322489 - AluSq SINE Alu -9 304 1 375 180 0 8 chr15 17373265 17373330 -68322424 - AluJ/FLAM SINE Alu -233 69 14 579 292 58 13 chr15 17373341 17373567 -68322187 - Charlie2 DNA MER1_type -2626 236 1 997 139 61 6 chr15 17374136 17374301 -68321453 - AluSg/x SINE Alu -4 308 135 1791 158 86 53 chr15 17374308 17374738 -68321016 + L1MC3 LINE L1 7076 7519 -266 1108 148 43 74 chr15 17374738 17374857 -68320897 - MER44D DNA MER2_type -1972 519 398 2348 72 3 10 chr15 17374857 17375163 -68320591 + AluSp SINE Alu 1 304 -9 2150 118 0 0 chr15 17375172 17375476 -68320278 + AluSx SINE Alu 1 304 -8 1108 148 43 74 chr15 17375476 17375603 -68320151 - MER44D DNA MER2_type -2101 390 1 271 173 30 179 chr15 17375607 17375641 -68320113 + L1MC3 LINE L1 6883 6920 -865 2217 98 3 0 chr15 17375641 17375948 -68319806 + AluSc SINE Alu 1 308 -1 271 173 30 179 chr15 17375948 17376049 -68319705 + L1MC3 LINE L1 6920 6991 -794 2254 110 0 0 chr15 17376049 17376380 -68319374 + AluSx SINE Alu 1 312 0 271 173 30 179 chr15 17376380 17376411 -68319343 + L1MC3 LINE L1 6991 7025 -760 362 196 40 14 chr15 17376412 17376595 -68319159 + L1MC3 LINE L1 7187 7364 -421 1740 155 0 50 chr15 17376595 17376823 -68318931 + AluJb SINE Alu 1 211 -101 2037 103 4 4 chr15 17376823 17377124 -68318630 + AluSx SINE Alu 1 301 0 1740 155 0 50 chr15 17377124 17377216 -68318538 + AluJb SINE Alu 211 306 -6 362 196 40 14 chr15 17377216 17377244 -68318510 + L1MC3 LINE L1 7364 7605 -180 2017 121 0 0 chr15 17377517 17377799 -68317955 + AluSg SINE Alu 27 308 -2 1933 151 10 0 chr15 17377811 17378115 -68317639 + AluJb SINE Alu 1 307 -5 180 0 0 0 chr15 17378134 17378154 -68317600 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1015 187 4 52 chr15 17380371 17380431 -68315323 + L1MC3 LINE L1 7521 7582 -203 1022 207 52 74 chr15 17380431 17380650 -68315104 + AluJo SINE Alu 1 214 -88 1928 118 7 0 chr15 17380650 17380949 -68314805 + AluSx SINE Alu 1 301 0 1022 207 52 74 chr15 17380949 17381037 -68314717 + AluJo SINE Alu 214 302 0 1015 187 4 52 chr15 17381037 17381209 -68314545 + L1MC3 LINE L1 7582 7741 -44 2107 97 3 13 chr15 17381209 17381519 -68314235 - AluY SINE Alu -4 307 1 1015 187 4 52 chr15 17381519 17381552 -68314202 + L1MC3 LINE L1 7741 7774 -11 956 118 0 15 chr15 17381553 17381688 -68314066 - FLAM_C SINE Alu 0 133 1 205 288 96 0 chr15 17382093 17382166 -68313588 + L2 LINE L2 2454 2533 -781 186 43 0 0 chr15 17382438 17382461 -68313293 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 2020 159 0 0 chr15 17382469 17382778 -68312976 - AluSx SINE Alu -3 309 1 849 163 48 0 chr15 17383114 17383261 -68312493 + FRAM SINE Alu 1 154 -22 451 246 106 39 chr15 17383337 17383516 -68312238 - MIR SINE MIR -14 248 58 409 264 66 0 chr15 17384668 17384774 -68310980 + L2 LINE L2 3198 3310 -3 485 315 42 6 chr15 17384793 17384958 -68310796 + L2 LINE L2 3102 3272 0 1374 169 31 24 chr15 17387314 17387569 -68308185 + AluJo SINE Alu 1 257 -55 2205 118 0 0 chr15 17387587 17387900 -68307854 + AluSq SINE Alu 1 313 0 369 275 23 0 chr15 17387932 17388063 -68307691 + L1MC/D LINE L1 5690 5823 -1985 2163 97 3 3 chr15 17388071 17388369 -68307385 + AluSq SINE Alu 1 298 -15 292 279 16 62 chr15 17388688 17388817 -68306937 + MIR SINE MIR 140 262 0 849 127 12 66 chr15 17388991 17389012 -68306742 - BC200 scRNA scRNA -42 158 137 2261 67 40 0 chr15 17389012 17389311 -68306443 - AluY SINE Alu 0 311 1 849 127 12 66 chr15 17389311 17389455 -68306299 - BC200 scRNA scRNA -63 137 2 1850 156 7 7 chr15 17389527 17389829 -68305925 - AluJb SINE Alu -10 302 1 664 194 65 69 chr15 17392190 17392373 -68303381 + MIR SINE MIR 16 198 -64 2204 103 30 0 chr15 17392373 17392674 -68303080 + AluSg SINE Alu 1 310 0 2239 110 0 0 chr15 17392681 17392981 -68302773 + AluSx SINE Alu 1 300 -12 664 194 65 69 chr15 17392981 17393006 -68302748 + MIR SINE MIR 204 231 -31 410 292 8 17 chr15 17393032 17393152 -68302602 + MER5A DNA MER1_type 41 159 -30 2374 77 0 3 chr15 17393159 17393471 -68302283 - AluY SINE Alu 0 311 1 2331 82 0 0 chr15 17395367 17395661 -68300093 + AluY SINE Alu 3 296 -15 835 184 7 0 chr15 17396152 17396293 -68299461 + FRAM SINE Alu 1 140 -36 2268 92 7 0 chr15 17396294 17396600 -68299154 - AluSx SINE Alu -4 308 1 1631 173 23 17 chr15 17399716 17400017 -68295737 - AluJo SINE Alu -9 303 1 321 304 124 7 chr15 17400265 17400438 -68295316 + MIR SINE MIR 5 192 -65 185 374 35 9 chr15 17401745 17401860 -68293894 + MIR3 SINE MIR 37 154 -54 1471 178 14 11 chr15 17402211 17402497 -68293257 - AluSx SINE Alu -19 293 7 503 312 114 49 chr15 17402942 17403175 -68292579 + L1ME4a LINE L1 5704 5963 -158 2098 114 7 0 chr15 17403175 17403473 -68292281 + AluSx SINE Alu 1 300 -12 503 312 114 49 chr15 17403473 17403547 -68292207 + L1ME4a LINE L1 5963 6031 -90 226 95 48 0 chr15 17403553 17403595 -68292159 - Alu SINE Alu -6 293 250 520 235 12 139 chr15 17404618 17404869 -68290885 - AluSc SINE Alu -89 220 2 1442 193 13 46 chr15 17404970 17405276 -68290478 + AluJo SINE Alu 1 296 -16 2257 106 0 0 chr15 17405277 17405578 -68290176 + AluSx SINE Alu 1 301 -11 1132 137 0 16 chr15 17405578 17405741 -68290013 + AluSg/x SINE Alu 134 295 -17 2425 77 0 0 chr15 17405741 17406052 -68289702 + AluY SINE Alu 1 311 0 1132 137 0 16 chr15 17406052 17406070 -68289684 + AluSg/x SINE Alu 295 312 0 429 268 63 16 chr15 17407222 17407349 -68288405 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 17407586 17407662 -68288092 + (CA)n Simple_repeat Simple_repeat 1 76 0 1907 149 0 0 chr15 17407782 17408084 -68287670 + AluSg SINE Alu 1 302 -8 579 292 58 13 chr15 17410974 17411200 -68284554 + Charlie2 DNA MER1_type 1 236 -2626 375 180 0 8 chr15 17411211 17411276 -68284478 + AluJo SINE Alu 14 78 -224 2318 92 0 0 chr15 17411276 17411580 -68284174 + AluSq SINE Alu 1 304 -9 1524 128 0 25 chr15 17411580 17411822 -68283932 + AluJo SINE Alu 72 307 -5 375 180 0 8 chr15 17411822 17411834 -68283920 + AluJo SINE Alu 76 78 -224 229 294 0 59 chr15 17412043 17412128 -68283626 + MIR3 SINE MIR 90 169 -39 1799 91 121 11 chr15 17412158 17412423 -68283331 + AluSg SINE Alu 1 294 -16 213 333 0 0 chr15 17412644 17412698 -68283056 + L2 LINE L2 3219 3272 0 787 174 0 0 chr15 17412819 17412934 -68282820 - FLAM_C SINE Alu -27 116 2 1335 131 59 5 chr15 17412986 17413207 -68282547 + AluSg SINE Alu 1 233 -77 23 0 0 0 chr15 17413268 17413291 -68282463 + AT_rich Low_complexity Low_complexity 1 23 0 616 216 8 15 chr15 17413291 17413425 -68282329 - AluSx SINE Alu -22 288 156 331 309 36 14 chr15 17413579 17413718 -68282036 + MIR SINE MIR 62 203 -59 913 119 63 0 chr15 17414606 17414749 -68281005 - AluSx SINE Alu -161 152 1 399 284 71 0 chr15 17414767 17414936 -68280818 + L1M4 LINE L1 4406 4586 -1560 2067 133 0 0 chr15 17414936 17415245 -68280509 - AluSx SINE Alu -3 309 1 2157 114 7 0 chr15 17415254 17415562 -68280192 - AluSq SINE Alu -2 311 2 1386 169 89 28 chr15 17415562 17415850 -68279904 + L1ME LINE L1 5467 5779 -385 2002 130 0 0 chr15 17415850 17416150 -68279604 + AluSq SINE Alu 9 308 -5 1386 169 89 28 chr15 17416150 17416187 -68279567 + L1ME LINE L1 5779 5812 -352 1009 148 33 6 chr15 17416189 17416372 -68279382 + AluJo SINE Alu 121 308 -4 240 207 52 0 chr15 17416383 17416441 -68279313 + L1ME LINE L1 5816 5876 -288 588 185 62 39 chr15 17416443 17416573 -68279181 + FLAM_A SINE Alu 1 133 0 786 172 14 21 chr15 17416575 17416720 -68279034 + AluSg SINE Alu 2 145 -165 595 274 40 45 chr15 17417341 17417564 -68278190 + MIR SINE MIR 41 262 0 836 141 0 22 chr15 17418909 17419044 -68276710 - FLAM_C SINE Alu -1 132 1 46 16 0 16 chr15 17419103 17419147 -68276607 + AT_rich Low_complexity Low_complexity 1 45 -18 1867 98 0 35 chr15 17419147 17419432 -68276322 - AluSq SINE Alu -6 307 33 46 16 0 16 chr15 17419432 17419451 -68276303 + AT_rich Low_complexity Low_complexity 45 63 0 227 201 142 22 chr15 17420113 17420217 -68275537 - MIR SINE MIR -88 120 2 25 51 0 0 chr15 17420653 17420692 -68275062 + AT_rich Low_complexity Low_complexity 1 39 0 317 321 86 91 chr15 17420802 17421222 -68274532 - L1MEd LINE L1 -4906 1213 796 23 0 0 0 chr15 17421241 17421264 -68274490 + AT_rich Low_complexity Low_complexity 1 23 0 1013 197 9 20 chr15 17421701 17421987 -68273767 + MER57-int LTR ERV1 6646 6882 -655 496 158 11 0 chr15 17421987 17422082 -68273672 + LTR54B LTR ERV1 4 99 -399 1846 150 3 19 chr15 17422121 17422434 -68273320 - AluSg SINE Alu 0 310 3 335 151 0 17 chr15 17422458 17422524 -68273230 - FLAM_A SINE Alu -17 116 60 335 220 20 60 chr15 17423396 17423496 -68272258 + MER5B DNA MER1_type 1 96 -82 196 340 124 26 chr15 17424181 17424334 -68271420 - L2 LINE L2 -1 3271 3104 1770 176 0 3 chr15 17424533 17424829 -68270925 + AluJb SINE Alu 3 297 -15 354 272 29 10 chr15 17426937 17427040 -68268714 + L3 LINE CR1 1356 1460 -117 2190 94 20 0 chr15 17427837 17428134 -68267620 - AluSx SINE Alu -6 306 4 1864 140 3 29 chr15 17428757 17429064 -68266690 - AluSx SINE Alu -11 301 3 1926 106 0 0 chr15 17429078 17429342 -68266412 - AluSq SINE Alu -2 311 48 632 285 12 6 chr15 17429744 17429909 -68265845 - L3b LINE CR1 -198 1385 1220 1933 119 3 14 chr15 17431805 17432135 -68263619 - AluSx SINE Alu 0 327 1 367 209 11 22 chr15 17432140 17432231 -68263523 - MIR SINE MIR -105 157 68 287 25 25 0 chr15 17440782 17440822 -68254932 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 315 11 0 chr15 17441083 17441175 -68254579 + L2 LINE L2 2966 3058 -214 1482 106 51 0 chr15 17441347 17441564 -68254190 + AluY SINE Alu 84 311 0 1871 141 47 0 chr15 17441574 17441872 -68253882 + AluSx SINE Alu 1 312 0 209 59 59 0 chr15 17441877 17441911 -68253843 + GA-rich Low_complexity Low_complexity 4 39 0 381 312 102 49 chr15 17443314 17443519 -68252235 - MIR SINE MIR -13 249 34 310 255 110 48 chr15 17446422 17446567 -68249187 - L1M4 LINE L1 -1408 4738 4585 2454 63 0 0 chr15 17446986 17447289 -68248465 + AluY SINE Alu 1 303 -8 23 97 0 0 chr15 17449475 17449547 -68246207 + GC_rich Low_complexity Low_complexity 1 72 0 3629 161 33 1 chr15 17450306 17450995 -68244759 - MER50 LTR ERV1 -23 711 1 1934 143 3 7 chr15 17452708 17453009 -68242745 + AluJb SINE Alu 1 300 -12 1003 171 0 6 chr15 17453009 17453173 -68242581 + AluJo/FRAM SINE Alu 134 296 -16 1744 148 14 3 chr15 17453176 17453459 -68242295 + AluJb SINE Alu 1 286 -26 555 320 96 9 chr15 17453675 17453894 -68241860 - MIR SINE MIR 0 262 25 2253 93 0 34 chr15 17454077 17454399 -68241355 - AluSx SINE Alu 0 312 2 338 252 113 53 chr15 17454632 17454783 -68240971 + L1MCa LINE L1 1896 2055 -4371 317 196 0 0 chr15 17454760 17454811 -68240943 - L1MC4 LINE L1 -1340 6702 6652 * 529 165 0 0 chr15 17454812 17454897 -68240857 - AluSg/x SINE Alu -11 298 214 876 88 95 54 chr15 17454897 17455044 -68240710 - AluSq SINE Alu -160 153 1 236 370 7 34 chr15 17455155 17455301 -68240453 + MIR3 SINE MIR 42 183 -25 425 296 112 36 chr15 17457299 17457522 -68238232 + MIR SINE MIR 23 262 0 2008 138 3 10 chr15 17457784 17458082 -68237672 - AluJb SINE Alu -15 297 2 23 33 0 0 chr15 17458082 17458112 -68237642 + AT_rich Low_complexity Low_complexity 1 30 0 345 320 10 32 chr15 17458387 17458715 -68237039 + GA-rich Low_complexity Low_complexity 1 320 0 268 261 97 62 chr15 17458840 17459016 -68236738 - L1ME LINE L1 -437 5684 5503 23 78 0 0 chr15 17460514 17460565 -68235189 + GC_rich Low_complexity Low_complexity 1 51 0 316 287 233 0 chr15 17461766 17461895 -68233859 - MER5A DNA MER1_type -24 165 7 2200 121 0 3 chr15 17461936 17462265 -68233489 - AluSx SINE Alu 0 312 1 1877 108 76 4 chr15 17462276 17462553 -68233201 - AluSx SINE Alu -15 297 1 204 125 0 0 chr15 17463777 17463809 -68231945 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 228 246 69 24 chr15 17464075 17464169 -68231585 - MER91B DNA MER1_type -37 103 1 1005 108 0 22 chr15 17464716 17464855 -68230899 + AluJo SINE Alu 1 136 -176 29 47 0 0 chr15 17465233 17465276 -68230478 + AT_rich Low_complexity Low_complexity 1 43 0 399 313 94 53 chr15 17465495 17465760 -68229994 - L2 LINE L2 -3 3269 2994 551 323 152 30 chr15 17466094 17466732 -68229022 - L2 LINE L2 -867 2447 1732 435 165 22 0 chr15 17466747 17466838 -68228916 - Charlie1 DNA MER1_type -20 2741 2649 2142 98 3 7 chr15 17466838 17467135 -68228619 + AluSx SINE Alu 7 302 -10 457 233 95 0 chr15 17468302 17468418 -68227336 - MER94 DNA DNA 0 134 8 3876 170 51 71 chr15 17468914 17470386 -68225368 + pTR5 LTR ERV1 263 2606 0 376 247 86 89 chr15 17471308 17471632 -68224122 + L2 LINE L2 2945 3267 -5 291 241 166 21 chr15 17471842 17471987 -68223767 + MIR3 SINE MIR 19 184 -24 426 303 37 6 chr15 17472009 17472171 -68223583 + MIR SINE MIR 20 186 -76 607 232 7 14 chr15 17472234 17472376 -68223378 - FLAM_C SINE Alu -1 142 2 278 286 95 37 chr15 17472383 17472491 -68223263 + L2 LINE L2 3114 3239 -74 2182 96 17 20 chr15 17472491 17472792 -68222962 - AluSx SINE Alu -12 300 1 278 286 95 37 chr15 17472792 17472872 -68222882 + L2 LINE L2 3239 3313 0 254 292 56 0 chr15 17473777 17473866 -68221888 + L1MC4a LINE L1 6079 6172 -1636 274 248 166 25 chr15 17474072 17474229 -68221525 - MER20B DNA MER1_type -75 708 530 652 229 7 0 chr15 17474232 17474372 -68221382 - AluY SINE Alu -18 293 153 2007 121 3 7 chr15 17475717 17476006 -68219748 - AluSx SINE Alu -24 288 1 739 186 0 0 chr15 17476068 17476186 -68219568 + FLAM_C SINE Alu 11 128 -15 250 129 32 16 chr15 17476272 17476334 -68219420 - L1ME4a LINE L1 -8 6113 6051 1630 165 3 53 chr15 17476343 17476646 -68219108 + AluJb SINE Alu 4 291 -21 645 214 0 8 chr15 17476801 17476932 -68218822 - FLAM_A SINE Alu -3 130 1 1548 155 52 65 chr15 17476966 17477256 -68218498 + AluJb SINE Alu 1 286 -26 645 238 33 8 chr15 17477490 17477699 -68218055 - L1ME4a LINE L1 -225 5896 5682 213 267 53 13 chr15 17478105 17478180 -68217574 + MER5A DNA MER1_type 4 81 -108 2412 61 14 0 chr15 17478321 17478614 -68217140 - AluSp SINE Alu -15 298 2 2251 87 10 0 chr15 17478619 17478918 -68216836 - AluY SINE Alu -9 302 1 1057 78 0 28 chr15 17478919 17479060 -68216694 - MER57-int LTR ERV1 -1000 6537 6401 856 113 8 16 chr15 17479063 17479187 -68216567 + AluSp SINE Alu 1 123 -190 30 27 0 0 chr15 17479374 17479411 -68216343 + AT_rich Low_complexity Low_complexity 1 37 0 462 136 38 98 chr15 17479738 17479870 -68215884 - MER69 DNA AcHobo -7 2519 2396 1965 144 10 22 chr15 17479884 17480197 -68215557 + AluJb SINE Alu 1 309 -3 332 171 12 61 chr15 17480235 17480317 -68215437 - MER116 DNA Mariner -1 79 2 2310 168 50 75 chr15 17480349 17480844 -68214910 - L1MB8 LINE L1 0 6178 5699 1858 158 3 7 chr15 17480844 17481148 -68214606 - AluSx SINE Alu -9 303 1 2310 168 50 75 chr15 17481148 17481235 -68214519 - L1MB8 LINE L1 -479 5699 5611 1145 219 31 89 chr15 17481241 17481656 -68214098 - MLT2D LTR ERVL -4 410 20 664 150 35 0 chr15 17481662 17481775 -68213979 - L1MB8 LINE L1 -568 5616 5500 322 186 117 76 chr15 17481780 17481925 -68213829 - MER69 DNA AcHobo -257 2269 2119 243 0 0 0 chr15 17482259 17482286 -68213468 + (CA)n Simple_repeat Simple_repeat 1 27 0 326 47 0 18 chr15 17482427 17482484 -68213270 + MLT2B3 LTR ERVL 1 54 -461 * 2101 172 14 19 chr15 17482472 17482839 -68212915 + MLT2B3 LTR ERVL 182 546 -8 2337 106 0 0 chr15 17483166 17483467 -68212287 - AluSx SINE Alu -11 301 1 276 272 150 35 chr15 17483528 17483699 -68212055 + MLT1J LTR MaLR 270 459 -2 1103 427 60 0 chr15 17484360 17484641 -68211113 - AluSc SINE Alu -1 298 1 718 156 8 23 chr15 17484745 17484873 -68210881 + AluJb SINE Alu 158 283 -29 275 230 20 50 chr15 17486882 17486982 -68208772 + MER5A DNA MER1_type 10 106 -83 1551 136 8 8 chr15 17491462 17491705 -68204049 - AluSx SINE Alu -17 295 53 863 137 0 14 chr15 17491906 17492045 -68203709 - LTR7 LTR ERV1 -313 137 1 1680 95 14 0 chr15 17492045 17492266 -68203488 - AluSg SINE Alu -86 224 1 800 177 27 21 chr15 17493211 17493397 -68202357 - AluSq SINE Alu -12 301 115 939 118 73 0 chr15 17493512 17493648 -68202106 - AluSp SINE Alu -167 146 1 341 320 32 8 chr15 17494061 17494186 -68201568 + L3 LINE CR1 1432 1559 -18 2101 89 9 92 chr15 17495997 17496324 -68199430 + AluSp SINE Alu 1 300 -13 2107 145 0 0 chr15 17496346 17496650 -68199104 + AluSx SINE Alu 3 306 -6 939 303 53 15 chr15 17497352 17497616 -68198138 - AluSq SINE Alu -39 274 1 341 320 32 8 chr15 17498027 17498152 -68197602 + L3 LINE CR1 1432 1559 -18 2101 89 9 92 chr15 17499961 17500288 -68195466 + AluSp SINE Alu 1 300 -13 1970 152 0 0 chr15 17500310 17500593 -68195161 + AluSx SINE Alu 3 285 -27 1833 138 15 0 chr15 17500700 17500969 -68194785 + AluSx SINE Alu 1 273 -39 297 100 0 0 chr15 17500989 17501039 -68194715 + (CA)n Simple_repeat Simple_repeat 2 51 0 1976 134 0 26 chr15 17501272 17501577 -68194177 - AluSx SINE Alu -15 297 1 2062 125 24 0 chr15 17501585 17501880 -68193874 - AluSx SINE Alu -9 303 2 2263 226 39 90 chr15 17502488 17503307 -68192447 - L1ME3 LINE L1 -19 6143 5367 356 284 60 8 chr15 17503333 17503467 -68192287 - L2 LINE L2 -454 2860 2720 2187 107 0 0 chr15 17504414 17504704 -68191050 + AluSx SINE Alu 1 290 -22 1839 159 0 32 chr15 17504736 17504878 -68190876 + AluJb SINE Alu 1 146 -166 2022 127 10 23 chr15 17504878 17505186 -68190568 + AluSx SINE Alu 5 308 -4 1839 159 0 32 chr15 17505186 17505358 -68190396 + AluJb SINE Alu 146 305 -7 2356 102 0 9 chr15 17505444 17505759 -68189995 + AluSq SINE Alu 1 312 -1 1587 147 0 95 chr15 17505797 17506103 -68189651 + AluJb SINE Alu 1 277 -35 572 260 64 4 chr15 17506103 17506338 -68189416 - L1ME LINE L1 -651 5513 5265 390 169 0 56 chr15 17506397 17506468 -68189286 - AluJ/FRAM SINE Alu -10 292 226 557 176 20 0 chr15 17506494 17506596 -68189158 - FLAM_C SINE Alu -38 105 2 786 266 73 15 chr15 17506699 17506973 -68188781 - L1ME LINE L1 -1232 4914 4625 697 213 0 14 chr15 17506985 17507126 -68188628 - FLAM_C SINE Alu -4 139 1 674 167 8 25 chr15 17507909 17508029 -68187725 + FLAM_C SINE Alu 2 119 -24 2162 113 20 3 chr15 17508879 17509181 -68186573 + AluSx SINE Alu 2 308 -4 2262 110 0 0 chr15 17509236 17509527 -68186227 - AluSx SINE Alu -21 291 1 22 0 0 0 chr15 17509654 17509676 -68186078 + AT_rich Low_complexity Low_complexity 1 22 0 1953 140 18 0 chr15 17509676 17509961 -68185793 - AluSx SINE Alu -22 290 1 1922 121 0 69 chr15 17510063 17510392 -68185362 - AluSx SINE Alu 0 308 1 515 220 9 18 chr15 17510891 17511000 -68184754 - MLT1F LTR MaLR -17 525 418 1237 153 14 92 chr15 17511006 17511300 -68184454 - AluSx SINE Alu 0 312 42 930 126 14 144 chr15 17511680 17511724 -68184030 + MER51B-int LTR ERV1 7623 7671 -145 2260 103 3 0 chr15 17511724 17512016 -68183738 + AluSg SINE Alu 1 293 -17 930 126 14 144 chr15 17512016 17512193 -68183561 + MER51B-int LTR ERV1 7671 7815 -1 1785 120 31 4 chr15 17512195 17512453 -68183301 + MER51B LTR ERV1 1 265 -112 2018 148 7 0 chr15 17512453 17512758 -68182996 - AluSx SINE Alu 0 312 6 2439 87 0 3 chr15 17512762 17513071 -68182683 - AluY SINE Alu -3 308 1 999 211 0 0 chr15 17513071 17513246 -68182508 - AluSg/x SINE Alu -16 296 122 386 200 29 0 chr15 17513246 17513316 -68182438 - AluJ/FLAM SINE Alu -230 72 1 1968 113 0 39 chr15 17514531 17514842 -68180912 - AluY SINE Alu -12 299 1 801 148 39 8 chr15 17515146 17515274 -68180480 + FRAM SINE Alu 34 165 -11 2220 111 13 0 chr15 17515548 17515854 -68179900 - AluSg SINE Alu 0 310 1 1488 21 0 2 chr15 17516494 17516699 -68179055 + (CTGTG)n Simple_repeat Simple_repeat 1 385 0 874 193 14 11 chr15 17516956 17517229 -68178525 + CT-rich Low_complexity Low_complexity 1 273 0 2215 112 10 0 chr15 17517645 17517941 -68177813 + AluSg SINE Alu 1 299 -11 2093 122 7 3 chr15 17517953 17518249 -68177505 + AluSx SINE Alu 1 297 -15 1776 99 13 0 chr15 17519749 17519982 -68175772 - AluSq SINE Alu -19 294 59 2226 119 0 0 chr15 17520180 17520475 -68175279 + AluSx SINE Alu 2 296 -16 1676 191 0 16 chr15 17522031 17522345 -68173409 - AluJb SINE Alu -3 309 1 888 251 14 14 chr15 17522857 17523068 -68172686 - AluJo SINE Alu -100 212 2 2023 150 0 0 chr15 17523607 17523907 -68171847 - AluSx SINE Alu -12 300 1 32 26 0 0 chr15 17525431 17525470 -68170284 + AT_rich Low_complexity Low_complexity 1 39 0 1683 138 7 34 chr15 17525551 17525847 -68169907 - AluY SINE Alu -9 302 15 1804 141 26 10 chr15 17526319 17526624 -68169130 - AluSx SINE Alu -2 310 1 345 197 0 0 chr15 17527253 17527314 -68168440 + MER50 LTR ERV1 497 557 -177 980 220 11 56 chr15 17527623 17527891 -68167863 + AluSx SINE Alu 21 276 -36 2353 101 0 0 chr15 17528042 17528338 -68167416 - AluSx SINE Alu -10 302 7 1971 138 10 16 chr15 17528699 17529011 -68166743 - AluSx SINE Alu -2 310 1 211 276 81 11 chr15 17529298 17529385 -68166369 - MER5A DNA MER1_type 0 189 97 545 190 224 0 chr15 17529665 17529781 -68165973 - MER46A DNA MER2_type -94 142 1 2472 62 0 0 chr15 17531601 17531892 -68163862 - AluY SINE Alu -20 291 1 21 0 0 0 chr15 17532901 17532922 -68162832 + AT_rich Low_complexity Low_complexity 1 21 0 1580 173 11 18 chr15 17534866 17535138 -68160616 + AluJb SINE Alu 30 299 -13 2033 138 6 34 chr15 17535858 17536178 -68159576 - AluSx SINE Alu -1 311 1 878 229 11 6 chr15 17536439 17536614 -68159140 - MER5B DNA MER1_type -1 177 2 306 67 0 0 chr15 17538713 17538758 -68156996 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2202 99 17 0 chr15 17539254 17539547 -68156207 - AluSx SINE Alu -14 298 1 379 164 0 0 chr15 17540176 17540237 -68155517 + MER50 LTR ERV1 497 557 -177 425 226 218 24 chr15 17541261 17541385 -68154369 + MIR SINE MIR 16 163 -99 27 29 0 0 chr15 17541402 17541436 -68154318 + AT_rich Low_complexity Low_complexity 1 34 0 328 245 64 11 chr15 17541536 17541630 -68154124 + MIR SINE MIR 150 248 -14 1695 168 16 40 chr15 17541933 17542237 -68153517 + AluJo SINE Alu 1 297 -15 3256 14 0 3 chr15 17542247 17542601 -68153153 + L1PA3 LINE L1 5803 6155 0 360 288 150 7 chr15 17542648 17542702 -68153052 - MER5A DNA MER1_type -1 188 143 2034 138 7 0 chr15 17542702 17543000 -68152754 + AluSx SINE Alu 2 301 -11 360 288 150 7 chr15 17543000 17543098 -68152656 - MER5A DNA MER1_type -46 143 14 393 138 0 0 chr15 17543203 17543268 -68152486 - L1MA9 LINE L1 -6 6306 6242 1912 129 102 3 chr15 17543270 17543578 -68152176 - L1MA9 LINE L1 -181 6131 5784 285 29 0 0 chr15 17543578 17543612 -68152142 + (TG)n Simple_repeat Simple_repeat 2 35 0 1912 129 102 3 chr15 17543612 17543645 -68152109 - L1MA9 LINE L1 -528 5784 5756 1819 159 14 3 chr15 17543645 17543941 -68151813 - AluJb SINE Alu -13 299 1 2220 119 3 0 chr15 17544350 17544661 -68151093 + AluSx SINE Alu 1 312 0 180 0 0 0 chr15 17545853 17545873 -68149881 + (T)n Simple_repeat Simple_repeat 1 20 0 2027 152 7 0 chr15 17546611 17546920 -68148834 - AluSx SINE Alu -1 311 1 464 216 221 11 chr15 17548188 17548205 -68147549 - L1ME4a LINE L1 -69 6052 6040 2444 84 3 0 chr15 17548205 17548514 -68147240 + AluSx SINE Alu 3 312 0 464 216 221 11 chr15 17548514 17548686 -68147068 - L1ME4a LINE L1 -81 6040 5823 2320 84 0 50 chr15 17548688 17549010 -68146744 - AluY SINE Alu -5 306 1 389 226 61 9 chr15 17549103 17549218 -68146536 - L1ME4a LINE L1 -419 5702 5582 246 196 20 0 chr15 17550394 17550445 -68145309 - L2 LINE L2 -1 3271 3220 1864 148 3 41 chr15 17551103 17551420 -68144334 - AluJb SINE Alu -7 305 1 1339 181 8 39 chr15 17551730 17551989 -68143765 - AluJo SINE Alu -25 287 37 185 273 36 0 chr15 17552498 17552553 -68143201 - MIR SINE MIR -62 146 90 873 112 46 40 chr15 17553407 17553559 -68142195 - AluSp SINE Alu -122 191 39 2517 119 27 9 chr15 17553559 17554093 -68141661 - MER57-int LTR ERV1 -1201 6336 5747 1980 111 0 77 chr15 17554094 17554419 -68141335 + AluSx SINE Alu 1 300 -12 326 103 184 92 chr15 17554419 17554506 -68141248 - MER57-int LTR ERV1 -2194 5343 5249 * 2139 94 5 4 chr15 17554505 17554895 -68140859 - MER57-int LTR ERV1 -2572 2645 2211 1960 162 0 0 chr15 17554963 17555260 -68140494 - AluSx SINE Alu -13 299 3 2069 139 3 0 chr15 17555272 17555566 -68140188 - AluSx SINE Alu -17 295 1 1339 181 8 39 chr15 17555876 17556135 -68139619 - AluJo SINE Alu -25 287 37 185 273 36 0 chr15 17556644 17556699 -68139055 - MIR SINE MIR -62 146 90 278 252 96 7 chr15 17556782 17556917 -68138837 + MER112 DNA MER1_type 29 175 -85 333 0 0 0 chr15 17556959 17556996 -68138758 + (TG)n Simple_repeat Simple_repeat 2 38 0 2098 90 23 30 chr15 17557026 17557327 -68138427 + AluSx SINE Alu 2 300 -12 187 208 21 21 chr15 17557611 17557659 -68138095 + MIR SINE MIR 106 153 -55 2364 89 0 3 chr15 17557659 17557963 -68137791 + AluSg SINE Alu 1 303 -7 2057 145 0 3 chr15 17558682 17558985 -68136769 - AluJb SINE Alu -10 302 1 374 214 48 12 chr15 17559002 17559086 -68136668 - L2 LINE L2 -3 3310 3224 2037 100 10 17 chr15 17559356 17559647 -68136107 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 17559923 17559943 -68135811 + (TC)n Simple_repeat Simple_repeat 1 20 0 288 354 70 50 chr15 17560414 17560730 -68135024 + L2 LINE L2 2716 3051 -221 1899 121 0 0 chr15 17560824 17561081 -68134673 + AluSx SINE Alu 1 257 -55 213 94 0 0 chr15 17561111 17561143 -68134611 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1310 256 66 49 chr15 17561143 17561315 -68134439 - L2 LINE L2 -13 3300 3132 2223 104 0 10 chr15 17561315 17561614 -68134140 + AluSg SINE Alu 1 296 -14 1310 256 66 49 chr15 17561614 17562110 -68133644 - L2 LINE L2 -181 3132 2625 251 233 94 138 chr15 17562110 17562198 -68133556 - L2 LINE L2 -989 2325 2246 2253 118 0 3 chr15 17562198 17562511 -68133243 - AluSx SINE Alu 0 312 1 251 233 94 138 chr15 17562511 17562581 -68133173 - L2 LINE L2 -1068 2246 2174 1674 187 0 7 chr15 17562892 17563192 -68132562 + AluJo SINE Alu 1 298 -14 1455 161 23 23 chr15 17563911 17564210 -68131544 + AluSc SINE Alu 1 299 -10 254 211 10 93 chr15 17564540 17564734 -68131020 + T-rich Low_complexity Low_complexity 2 179 0 472 250 14 29 chr15 17564752 17564892 -68130862 + AluYa5 SINE Alu 163 300 -11 1002 209 0 0 chr15 17566140 17566298 -68129456 + FRAM SINE Alu 1 158 -8 352 154 0 0 chr15 17566926 17566978 -68128776 + AluSq SINE Alu 140 191 -112 895 199 0 6 chr15 17567476 17567632 -68128122 - AluJo/FRAM SINE Alu -11 291 137 1448 155 7 37 chr15 17567635 17567931 -68127823 - AluSx SINE Alu -15 297 11 462 235 26 9 chr15 17567961 17568076 -68127678 - FLAM_C SINE Alu -16 117 1 1488 163 0 4 chr15 17568202 17568429 -68127325 - AluSx SINE Alu -84 228 3 999 132 0 0 chr15 17568430 17568566 -68127188 - AluSq/x SINE Alu -176 136 1 829 171 0 0 chr15 17568568 17568697 -68127057 - AluJb SINE Alu -20 292 164 246 325 0 0 chr15 17568714 17568785 -68126969 + MIR SINE MIR 79 150 -58 289 167 0 0 chr15 17570231 17570279 -68125475 + Alu SINE Alu 1 48 -253 2166 108 7 0 chr15 17570688 17570985 -68124769 + AluSg SINE Alu 1 299 -11 235 392 8 0 chr15 17571111 17571236 -68124518 + L2 LINE L2 2934 3059 -213 1704 155 0 52 chr15 17571366 17571510 -68124244 + AluJo SINE Alu 1 122 -190 2307 92 0 19 chr15 17571510 17571825 -68123929 + AluSc SINE Alu 1 309 0 1704 155 0 52 chr15 17571825 17571990 -68123764 + AluJo SINE Alu 122 294 -18 1892 175 0 0 chr15 17572234 17572537 -68123217 + AluJo SINE Alu 7 309 -3 959 198 16 62 chr15 17572580 17572822 -68122932 + AluJb SINE Alu 1 231 -81 2049 152 7 0 chr15 17573543 17573853 -68121901 - AluSx SINE Alu 0 312 1 327 214 167 30 chr15 17575071 17575137 -68120617 - L1ME4a LINE L1 -4 6117 6061 2452 77 3 0 chr15 17575137 17575437 -68120317 + AluSx SINE Alu 3 303 -9 327 214 167 30 chr15 17575437 17575538 -68120216 - L1ME4a LINE L1 -60 6061 5927 268 308 16 28 chr15 17575636 17575818 -68119936 - AluY SINE Alu -7 294 115 22 0 0 0 chr15 17575943 17575965 -68119789 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 17576185 17576211 -68119543 + AT_rich Low_complexity Low_complexity 1 26 0 237 294 59 15 chr15 17576368 17576504 -68119250 + FRAM SINE Alu 21 162 -4 2343 88 0 3 chr15 17576836 17577133 -68118621 + AluSg SINE Alu 7 302 -8 2077 145 0 3 chr15 17577853 17578156 -68117598 - AluJb SINE Alu -10 302 1 346 214 48 12 chr15 17578173 17578257 -68117497 - L2 LINE L2 -3 3310 3224 2062 100 10 17 chr15 17578527 17578818 -68116936 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 17579094 17579114 -68116640 + (TC)n Simple_repeat Simple_repeat 1 20 0 220 346 99 37 chr15 17579585 17579899 -68115855 + L2 LINE L2 2716 3051 -221 340 263 14 94 chr15 17580493 17580706 -68115048 + AluSp SINE Alu 108 303 0 250 310 103 7 chr15 17580854 17581009 -68114745 + AluSp SINE Alu 121 290 -13 1995 158 0 0 chr15 17581033 17581330 -68114424 + AluSx SINE Alu 3 299 -13 269 152 23 126 chr15 17581330 17581417 -68114337 + MER57-int LTR ERV1 1902 4693 -2303 * 2115 111 34 3 chr15 17581396 17581786 -68113968 + MER57-int LTR ERV1 2211 5004 -2533 319 103 184 92 chr15 17581785 17581872 -68113882 + MER57-int LTR ERV1 5249 5343 -2194 * 1998 111 0 77 chr15 17581872 17582197 -68113557 - AluSx SINE Alu -12 300 1 2687 120 27 7 chr15 17582198 17582730 -68113024 + MER57-int LTR ERV1 5747 6334 -1203 2016 107 0 0 chr15 17582730 17582993 -68112761 + AluSg SINE Alu 37 299 -11 1365 141 0 0 chr15 17582993 17583191 -68112563 + AluSx SINE Alu 29 226 -86 863 146 8 18 chr15 17583191 17583359 -68112395 + LTR7 LTR ERV1 1 218 -232 780 126 40 60 chr15 17583561 17583712 -68112042 + LTR7 LTR ERV1 303 450 0 2020 175 93 24 chr15 17583712 17584175 -68111579 + HERVH LTR ERV1 1 495 -7218 16500 174 21 48 chr15 17584199 17587028 -68108726 + HERVH LTR ERV1 778 3107 -4439 2201 114 0 29 chr15 17587028 17587344 -68108410 + AluY SINE Alu 1 307 -4 16500 174 21 48 chr15 17587344 17588542 -68107212 + HERVH LTR ERV1 3107 4336 -3210 1153 142 5 0 chr15 17588530 17588720 -68107034 + HERVH LTR ERV1 6758 6948 -765 * 3683 89 9 43 chr15 17588771 17589331 -68106423 + HERVH LTR ERV1 7173 7713 0 897 120 8 18 chr15 17589331 17589499 -68106255 + LTR7 LTR ERV1 1 218 -232 1048 124 59 0 chr15 17589520 17589673 -68106081 - AluSx SINE Alu -150 162 1 444 271 77 0 chr15 17589705 17589860 -68105894 + L1M4 LINE L1 4420 4586 -1560 2153 123 0 13 chr15 17589860 17590169 -68105585 - AluSx SINE Alu -7 305 1 1632 128 30 8 chr15 17590171 17590431 -68105323 - AluSp SINE Alu 0 313 52 1555 149 8 0 chr15 17590431 17590665 -68105089 + AluSg SINE Alu 64 300 -10 25 0 0 0 chr15 17590665 17590690 -68105064 + AT_rich Low_complexity Low_complexity 1 25 0 1998 148 7 0 chr15 17590742 17591069 -68104685 + AluSx SINE Alu 1 312 0 3051 149 33 38 chr15 17591070 17591300 -68104454 + MER41B LTR ERV1 1 231 -404 2425 84 7 0 chr15 17591300 17591608 -68104146 + AluSq SINE Alu 1 310 -3 3051 149 33 38 chr15 17591608 17591928 -68103826 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 17591940 17592003 -68103751 - L1MA3 LINE L1 0 6305 6246 2224 116 0 0 chr15 17592034 17592327 -68103427 + AluSq SINE Alu 5 297 -16 900 106 57 0 chr15 17592413 17592554 -68103200 - L1PB1 LINE L1 -4 6147 5999 1974 134 62 0 chr15 17592557 17592847 -68102907 - AluSx SINE Alu -4 308 1 551 187 9 0 chr15 17592850 17592957 -68102797 + MER41A LTR ERV1 439 546 -8 456 277 0 0 chr15 17592969 17593099 -68102655 + L1M4 LINE L1 4672 4801 -1345 483 108 0 117 chr15 17593100 17593144 -68102610 + LTR8A LTR ERV1 1 49 -678 2124 131 13 0 chr15 17593144 17593450 -68102304 + AluSx SINE Alu 1 310 -2 483 108 0 117 chr15 17593450 17593516 -68102238 + LTR8A LTR ERV1 49 98 -629 * 789 112 8 8 chr15 17593508 17593633 -68102121 + LTR9B LTR ERV1 437 561 -83 1819 106 0 0 chr15 17593684 17593930 -68101824 + AluSg SINE Alu 53 298 -12 1830 152 79 75 chr15 17593931 17594286 -68101468 + LTR8A LTR ERV1 214 566 -125 1818 127 25 7 chr15 17594286 17594561 -68101193 + AluSx SINE Alu 1 280 -32 192 97 0 0 chr15 17594561 17594592 -68101162 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1830 152 79 75 chr15 17594592 17594709 -68101045 + LTR8A LTR ERV1 565 644 -47 318 85 489 0 chr15 17594738 17594832 -68100922 - L1MB7 LINE L1 -12 6172 6033 192 77 0 0 chr15 17594864 17594890 -68100864 + (A)n Simple_repeat Simple_repeat 1 26 0 499 160 0 0 chr15 17594897 17594972 -68100782 + AluS SINE Alu 2 76 -236 2488 99 55 22 chr15 17594972 17595079 -68100675 - MER51B LTR ERV1 0 377 275 1993 146 10 0 chr15 17595079 17595388 -68100366 + AluSx SINE Alu 1 312 0 2488 99 55 22 chr15 17595388 17595645 -68100109 - MER51B LTR ERV1 -102 275 1 918 132 26 141 chr15 17595647 17595824 -68099930 - MER51B-int LTR ERV1 -1 7815 7668 2280 102 0 0 chr15 17595824 17596117 -68099637 - AluSg SINE Alu -17 293 1 918 132 26 141 chr15 17596117 17596166 -68099588 - MER51B-int LTR ERV1 -148 7668 7615 271 298 0 0 chr15 17596205 17596289 -68099465 - AluY SINE Alu -96 205 122 1277 110 0 0 chr15 17596684 17596848 -68098906 - AluSg/x SINE Alu -19 293 130 1842 188 0 6 chr15 17596852 17597166 -68098588 - 7SLRNA srpRNA srpRNA -8 312 1 2046 127 7 7 chr15 17597193 17597493 -68098261 - AluSc SINE Alu -7 302 3 1852 154 6 41 chr15 17597500 17597688 -68098066 - AluJo SINE Alu 0 312 138 2389 45 41 3 chr15 17597688 17597979 -68097775 - AluY SINE Alu -9 302 1 1852 154 6 41 chr15 17597979 17598108 -68097646 - AluJo SINE Alu -174 138 6 539 211 9 0 chr15 17598242 17598351 -68097403 + FLAM_A SINE Alu 21 130 -12 1793 159 3 23 chr15 17598353 17598654 -68097100 + AluJo SINE Alu 1 295 -17 29 0 0 0 chr15 17598701 17598730 -68097024 + AT_rich Low_complexity Low_complexity 1 29 0 2300 148 63 63 chr15 17598735 17598895 -68096859 + MLT1D LTR MaLR 1 160 -345 2492 87 0 0 chr15 17598895 17599206 -68096548 - AluY SINE Alu 0 311 1 2300 148 63 63 chr15 17599206 17599550 -68096204 + MLT1D LTR MaLR 159 505 0 466 243 0 0 chr15 17600035 17600138 -68095616 + FLAM_A SINE Alu 35 137 -5 23 0 0 0 chr15 17600559 17600582 -68095172 + AT_rich Low_complexity Low_complexity 1 23 0 1068 128 7 0 chr15 17601040 17601208 -68094546 - AluSg/x SINE Alu 0 302 134 2396 96 0 0 chr15 17601208 17601510 -68094244 - AluSg SINE Alu -8 302 1 1393 135 0 0 chr15 17601513 17601713 -68094041 - MER51-int LTR ERV1 -150 7666 7467 2231 105 3 6 chr15 17601730 17602043 -68093711 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 17602082 17602177 -68093577 - LTR54B LTR ERV1 -399 99 4 6414 112 78 43 chr15 17602177 17602506 -68093248 - MER51-int LTR ERV1 -655 6882 6566 2202 123 0 3 chr15 17602506 17602807 -68092947 - AluSg SINE Alu -10 300 1 6414 112 78 43 chr15 17602807 17602952 -68092802 - MER51-int LTR ERV1 -971 6566 6427 1609 109 60 84 chr15 17602952 17603098 -68092656 + AluSp SINE Alu 1 138 -175 2268 80 17 0 chr15 17603098 17603222 -68092532 + AluY SINE Alu 1 121 -190 474 101 0 0 chr15 17603222 17603291 -68092463 + (CA)n Simple_repeat Simple_repeat 2 70 0 2268 80 17 0 chr15 17603291 17603455 -68092299 + AluY SINE Alu 121 294 -17 1609 109 60 84 chr15 17603455 17603592 -68092162 + AluSp SINE Alu 138 277 -36 2101 107 3 17 chr15 17603593 17603891 -68091863 + AluSp SINE Alu 1 294 -19 6414 112 78 43 chr15 17603891 17603979 -68091775 - MER51-int LTR ERV1 -1110 6427 6344 2254 73 0 0 chr15 17603979 17604253 -68091501 - AluSg SINE Alu 0 310 37 6414 112 78 43 chr15 17604253 17604756 -68090998 - MER51-int LTR ERV1 -1193 6344 5776 1913 112 6 78 chr15 17604784 17605105 -68090649 + AluSx SINE Alu 3 300 -12 319 103 184 92 chr15 17605105 17605192 -68090562 - MER51-int LTR ERV1 -2194 5343 5249 * 2052 98 5 6 chr15 17605191 17605582 -68090172 - MER51-int LTR ERV1 -2572 2645 2211 304 244 0 0 chr15 17605709 17605795 -68089959 + C-rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr15 17605895 17605916 -68089838 + AT_rich Low_complexity Low_complexity 1 21 0 2120 73 0 8 chr15 17605954 17606215 -68089539 + AluSg SINE Alu 30 288 -22 2168 113 13 13 chr15 17606226 17606535 -68089219 + AluSp SINE Alu 1 309 -4 2037 131 0 0 chr15 17606722 17607005 -68088749 + AluSx SINE Alu 28 310 -2 784 162 0 22 chr15 17607215 17607351 -68088403 + FLAM_C SINE Alu 1 133 0 2210 133 0 0 chr15 17607437 17607739 -68088015 + AluSx SINE Alu 1 302 -10 1324 140 144 11 chr15 17607913 17608203 -68087551 - MSTA LTR MaLR -91 335 1 248 298 36 12 chr15 17608205 17608289 -68087465 - LTR67 LTR ERVL -44 513 428 207 0 0 0 chr15 17608393 17608416 -68087338 + (TA)n Simple_repeat Simple_repeat 2 24 0 206 269 60 0 chr15 17609423 17609490 -68086264 + MIR SINE MIR 191 261 -1 2180 116 0 0 chr15 17609705 17609998 -68085756 + AluSc SINE Alu 1 293 -16 2178 110 10 0 chr15 17610082 17610382 -68085372 - AluSp SINE Alu -10 303 1 2094 125 0 10 chr15 17610465 17610770 -68084984 + AluSx SINE Alu 1 302 -10 350 320 26 0 chr15 17610789 17610942 -68084812 + L1M4 LINE L1 3289 3445 -2701 2291 116 0 3 chr15 17610950 17611252 -68084502 + AluSx SINE Alu 1 301 -11 2140 118 23 3 chr15 17611295 17611599 -68084155 + AluSx SINE Alu 1 310 -2 1612 181 14 10 chr15 17611685 17611973 -68083781 + AluJo SINE Alu 1 289 -23 899 114 0 0 chr15 17611983 17612097 -68083657 + AluSg/x SINE Alu 173 286 -26 34 42 0 0 chr15 17612097 17612145 -68083609 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr15 17612473 17612501 -68083253 + (A)n Simple_repeat Simple_repeat 1 28 0 974 213 12 47 chr15 17612590 17612848 -68082906 + AluJb SINE Alu 43 291 -21 597 218 129 87 chr15 17612862 17612920 -68082834 + L1MC5 LINE L1 7517 7571 -390 2406 86 0 0 chr15 17612920 17613211 -68082543 - AluY SINE Alu -20 291 1 597 218 129 87 chr15 17613211 17613533 -68082221 + L1MC5 LINE L1 7571 7913 -48 2102 128 3 0 chr15 17614454 17614744 -68081010 - AluSx SINE Alu -21 291 1 839 229 37 16 chr15 17615535 17615723 -68080031 + MER58A DNA MER1_type 2 193 -31 1669 197 3 13 chr15 17615738 17616053 -68079701 - AluJb SINE Alu 0 312 1 1578 132 73 38 chr15 17616998 17617285 -68078469 + AluJb SINE Alu 2 298 -14 2348 93 0 0 chr15 17617335 17617635 -68078119 + AluSq SINE Alu 14 313 0 730 136 8 30 chr15 17618191 17618323 -68077431 + FLAM_C SINE Alu 5 133 0 366 23 0 0 chr15 17618359 17618402 -68077352 + (TG)n Simple_repeat Simple_repeat 2 44 0 1779 169 41 0 chr15 17618754 17618929 -68076825 - AluJb SINE Alu -5 307 114 189 0 0 0 chr15 17618929 17618950 -68076804 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1779 169 41 0 chr15 17618950 17619069 -68076685 - AluJb SINE Alu -198 114 1 1881 106 3 94 chr15 17619150 17619470 -68076284 + AluJb SINE Alu 1 291 -21 1790 86 126 11 chr15 17620114 17620383 -68075371 + AluSg1 SINE Alu 1 300 -9 25 0 0 0 chr15 17620798 17620823 -68074931 + AT_rich Low_complexity Low_complexity 1 25 0 1825 166 24 0 chr15 17620832 17621127 -68074627 + AluJb SINE Alu 1 302 -10 2006 121 0 56 chr15 17621132 17621454 -68074300 + AluSg SINE Alu 1 304 -6 533 266 23 22 chr15 17621466 17621717 -68074037 + L1ME LINE L1 769 1304 -4697 27 0 0 0 chr15 17622051 17622078 -68073676 + AT_rich Low_complexity Low_complexity 1 27 0 524 141 0 3 chr15 17622127 17622368 -68073386 + AluSx SINE Alu 1 307 -2 892 246 108 38 chr15 17622379 17622720 -68073034 + MLT1A1 LTR MaLR 1 365 0 258 111 74 19 chr15 17622790 17622844 -68072910 + MER4D LTR ERV1 777 833 -70 2147 129 0 28 chr15 17622866 17623183 -68072571 + AluSx SINE Alu 5 312 0 2242 84 21 0 chr15 17623299 17623586 -68072168 + AluSx SINE Alu 1 293 -19 1088 254 115 8 chr15 17623699 17624179 -68071575 + L1ME LINE L1 2269 2799 -3281 724 132 0 35 chr15 17624189 17624303 -68071451 - FRAM SINE Alu -18 158 49 539 256 66 5 chr15 17624306 17624517 -68071237 + L1ME LINE L1 2803 3026 -3054 1755 175 0 7 chr15 17624522 17624814 -68070940 + AluSx SINE Alu 1 290 -22 292 211 14 0 chr15 17624891 17624962 -68070792 - MER58 DNA MER1_type -2307 113 42 2297 107 10 0 chr15 17624963 17625271 -68070483 + AluSx SINE Alu 1 311 -1 2694 174 56 14 chr15 17625280 17625796 -68069958 + L1MB5 LINE L1 5585 6122 -52 2209 90 52 0 chr15 17625796 17626085 -68069669 - AluSp SINE Alu -9 304 1 940 204 24 0 chr15 17626097 17626264 -68069490 - AluJb SINE Alu -141 171 1 283 151 0 0 chr15 17626271 17626324 -68069430 + L1MB4 LINE L1 6128 6180 0 1468 184 16 20 chr15 17626362 17626667 -68069087 + AluJo SINE Alu 9 312 0 2339 99 3 0 chr15 17626879 17627181 -68068573 - AluSg SINE Alu -7 303 1 735 177 8 0 chr15 17627948 17628078 -68067676 + AluJo/FLAM SINE Alu 2 132 -180 2064 124 3 23 chr15 17628080 17628379 -68067375 + AluSp SINE Alu 1 293 -20 2105 133 0 7 chr15 17628383 17628683 -68067071 + AluSx SINE Alu 1 298 -14 1466 133 0 131 chr15 17628939 17629276 -68066478 - AluSg SINE Alu -17 293 1 223 222 56 139 chr15 17629838 17629982 -68065772 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 17630695 17630989 -68064765 + AluJo SINE Alu 1 297 -15 1153 48 0 0 chr15 17631054 17631199 -68064555 - L1PA5 LINE L1 -3 6151 6007 2333 101 3 22 chr15 17631249 17631566 -68064188 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 17631873 17631912 -68063842 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 17632244 17632427 -68063327 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 17632467 17632488 -68063266 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2380 75 3 0 chr15 17632587 17632882 -68062872 - AluY SINE Alu -13 298 3 1804 149 31 3 chr15 17634554 17634842 -68060912 - AluSx SINE Alu -15 297 2 1512 137 6 128 chr15 17635077 17635279 -68060475 - AluSx SINE Alu -1 301 157 2170 107 0 0 chr15 17635279 17635560 -68060194 - AluY SINE Alu -30 281 1 1512 137 6 128 chr15 17635560 17635700 -68060054 - AluSx SINE Alu -145 157 1 1901 162 0 0 chr15 17635829 17636113 -68059641 - AluSx SINE Alu -26 286 3 2212 112 3 0 chr15 17636125 17636420 -68059334 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 17636430 17636744 -68059010 - AluSp SINE Alu -4 309 1 2073 146 55 10 chr15 17636750 17637150 -68058604 - MER41-int LTR ERV1 -2344 4652 2820 * 4900 103 133 1 chr15 17637122 17637948 -68057806 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 17637949 17638533 -68057221 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 17638533 17638830 -68056924 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 17638830 17638938 -68056816 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 17638940 17640287 -68055467 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 17640299 17640450 -68055304 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 17640434 17640582 -68055172 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 17640604 17640745 -68055009 - AluSg/x SINE Alu -27 283 143 989 186 14 59 chr15 17640859 17641080 -68054674 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 17641236 17641486 -68054268 - AluJb SINE Alu -30 282 1 2498 64 0 6 chr15 17641587 17641901 -68053853 + AluSq SINE Alu 1 312 -1 1776 156 14 3 chr15 17642271 17642560 -68053194 - AluSc SINE Alu -13 296 5 227 216 0 0 chr15 17642716 17642753 -68053001 + Alu SINE Alu 230 266 -37 34 42 0 0 chr15 17643041 17643089 -68052665 + AT_rich Low_complexity Low_complexity 1 48 0 899 114 0 0 chr15 17643089 17643203 -68052551 - AluSg/x SINE Alu -26 286 173 1612 181 14 10 chr15 17643213 17643501 -68052253 - AluJo SINE Alu -23 289 1 2333 109 0 3 chr15 17643587 17643898 -68051856 - AluSx SINE Alu -2 310 1 620 220 38 0 chr15 17643939 17644098 -68051656 + L1MD3 LINE L1 7737 7901 -94 1598 122 24 116 chr15 17644099 17644427 -68051327 + AluYb8 SINE Alu 5 302 -16 377 143 14 0 chr15 17644462 17644532 -68051222 + L1MA5A LINE L1 6222 6292 -5 494 139 25 0 chr15 17644544 17644623 -68051131 + AluSx SINE Alu 2 82 -230 1506 140 0 9 chr15 17644798 17645026 -68050728 + AluSx SINE Alu 70 295 -15 2398 103 0 0 chr15 17645026 17645336 -68050418 + AluSg SINE Alu 1 310 0 530 181 4 2 chr15 17645359 17645448 -68050306 + L1MD3 LINE L1 6261 6348 -1637 692 168 38 23 chr15 17645448 17645579 -68050175 + FLAM_C SINE Alu 1 133 0 2205 133 0 0 chr15 17645589 17645898 -68049856 + AluSx SINE Alu 1 309 -3 2195 132 0 3 chr15 17645907 17646218 -68049536 + AluSx SINE Alu 1 310 -2 571 270 129 22 chr15 17646224 17646535 -68049219 + L1ME LINE L1 4749 5092 -1054 2374 112 0 0 chr15 17646537 17646849 -68048905 + AluSx SINE Alu 1 312 0 1135 207 3 116 chr15 17646858 17647187 -68048567 - AluJo SINE Alu -9 293 2 36 0 0 0 chr15 17647187 17647223 -68048531 + AT_rich Low_complexity Low_complexity 1 36 0 318 128 21 0 chr15 17647228 17647275 -68048479 + Alu SINE Alu 5 52 -250 30 0 0 0 chr15 17647285 17647315 -68048439 + AT_rich Low_complexity Low_complexity 1 30 0 2134 121 0 0 chr15 17647438 17647747 -68048007 + AluSx SINE Alu 5 313 0 532 270 178 2 chr15 17647748 17647968 -68047786 + L1ME LINE L1 5483 5735 -431 2020 128 7 0 chr15 17648005 17648302 -68047452 - AluSg SINE Alu -11 299 1 23 68 0 0 chr15 17648712 17648756 -68046998 + AT_rich Low_complexity Low_complexity 1 44 0 1300 240 130 18 chr15 17649478 17649870 -68045884 - LTR33A LTR ERVL 0 523 88 297 342 36 0 chr15 17649897 17650008 -68045746 + L3 LINE CR1 1192 1306 -271 2395 95 3 0 chr15 17650029 17650333 -68045421 + AluSg SINE Alu 1 305 -5 384 167 15 0 chr15 17650506 17650572 -68045182 - MLT1F1 LTR MaLR 0 567 501 2496 46 0 16 chr15 17650906 17651213 -68044541 + AluY SINE Alu 1 302 -9 2313 43 50 0 chr15 17652221 17652501 -68043253 - AluYa5 SINE Alu -17 294 1 24 0 0 0 chr15 17652791 17652815 -68042939 + AT_rich Low_complexity Low_complexity 1 24 0 1073 233 96 52 chr15 17653057 17653422 -68042332 - MLT1F1 LTR MaLR -52 515 135 621 202 9 0 chr15 17654054 17654168 -68041586 + FLAM_C SINE Alu 1 115 -28 1102 118 13 0 chr15 17654184 17654337 -68041417 - AluSg/x SINE Alu -21 289 135 2337 105 0 0 chr15 17654350 17654646 -68041108 - AluSg SINE Alu -14 296 1 1126 160 11 0 chr15 17654661 17654836 -68040918 + AluJb SINE Alu 130 306 -6 634 157 107 8 chr15 17654901 17655022 -68040732 + FLAM_C SINE Alu 1 133 0 1476 163 37 4 chr15 17655126 17655371 -68040383 + AluJo SINE Alu 43 295 -17 2216 99 14 0 chr15 17655378 17655671 -68040083 + AluSp SINE Alu 1 297 -16 312 332 79 52 chr15 17655760 17655834 -68039920 + L2 LINE L2 2026 2097 -1217 2334 69 14 7 chr15 17655834 17656125 -68039629 - AluY SINE Alu -16 295 3 2311 97 3 7 chr15 17656134 17656434 -68039320 - AluSp SINE Alu -14 299 1 312 332 79 52 chr15 17656434 17656981 -68038773 + L2 LINE L2 2104 2674 -640 2240 113 3 0 chr15 17657351 17657653 -68038101 - AluSg SINE Alu -7 303 1 223 222 56 139 chr15 17658215 17658359 -68037395 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 17659073 17659367 -68036387 + AluJo SINE Alu 1 297 -15 1205 35 0 0 chr15 17659432 17659577 -68036177 - L1PA5 LINE L1 -3 6151 6007 2104 119 3 31 chr15 17659627 17659947 -68035807 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 17660254 17660293 -68035461 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 17660625 17660808 -68034946 + AluSc SINE Alu 1 183 -126 236 145 24 121 chr15 17661694 17661777 -68033977 + AluY SINE Alu 106 180 -121 37 23 0 0 chr15 17661805 17661849 -68033905 + AT_rich Low_complexity Low_complexity 1 44 0 2380 75 3 0 chr15 17661952 17662247 -68033507 - AluY SINE Alu -13 298 3 1792 145 31 7 chr15 17663921 17664210 -68031544 - AluSx SINE Alu -15 297 2 1631 126 6 126 chr15 17664445 17664647 -68031107 - AluSx SINE Alu -1 301 155 2170 107 0 0 chr15 17664647 17664928 -68030826 - AluY SINE Alu -30 281 1 1631 126 6 126 chr15 17664928 17665067 -68030687 - AluSx SINE Alu -147 155 1 2076 125 4 0 chr15 17665253 17665559 -68030195 + AluSx SINE Alu 1 307 0 1335 190 0 0 chr15 17665686 17665907 -68029847 + AluJo SINE Alu 53 273 -39 2319 102 0 0 chr15 17666077 17666381 -68029373 - AluY SINE Alu -7 304 1 1447 222 17 10 chr15 17666738 17667031 -68028723 - AluJb SINE Alu -17 295 1 2365 81 3 3 chr15 17667078 17667373 -68028381 - AluSg SINE Alu -15 295 1 2148 120 17 3 chr15 17668034 17668334 -68027420 + AluSq SINE Alu 1 304 -9 527 191 0 9 chr15 17668668 17668773 -68026981 + FLAM_C SINE Alu 40 143 0 332 244 98 16 chr15 17669422 17669545 -68026209 - MIR SINE MIR -61 201 69 2150 101 27 3 chr15 17669749 17670047 -68025707 + AluSx SINE Alu 1 305 -7 277 239 106 26 chr15 17670948 17671061 -68024693 - MER51B LTR ERV1 -240 137 16 2027 126 0 3 chr15 17671256 17671550 -68024204 - AluY SINE Alu -18 293 1 1401 218 31 10 chr15 17671906 17672195 -68023559 - AluJb SINE Alu -17 295 1 2240 95 7 7 chr15 17672242 17672537 -68023217 - AluSg SINE Alu -15 295 1 2302 115 0 0 chr15 17673888 17674192 -68021562 + AluSq SINE Alu 1 304 -9 1652 174 0 60 chr15 17674202 17674339 -68021415 + AluJb SINE Alu 1 145 -167 2298 89 7 17 chr15 17674339 17674641 -68021113 + AluSq SINE Alu 1 299 -14 1652 174 0 60 chr15 17674641 17674819 -68020935 + AluJb SINE Alu 145 297 -15 2179 88 27 10 chr15 17674921 17675217 -68020537 + AluY SINE Alu 1 301 -10 297 194 112 20 chr15 17675229 17675327 -68020427 + L1MC4a LINE L1 7197 7303 -505 1949 148 3 26 chr15 17675344 17675654 -68020100 + AluSx SINE Alu 1 303 -9 260 270 0 0 chr15 17676044 17676118 -68019636 + L1MC4 LINE L1 7940 8013 -29 1992 151 3 0 chr15 17676198 17676503 -68019251 + AluSx SINE Alu 1 306 -6 34 42 0 0 chr15 17676636 17676684 -68019070 + AT_rich Low_complexity Low_complexity 1 48 0 1505 197 11 0 chr15 17676693 17676957 -68018797 - AluJb SINE Alu -45 267 1 1150 110 0 0 chr15 17677779 17677933 -68017821 - AluSg/x SINE Alu -11 301 148 2409 96 0 0 chr15 17678289 17678590 -68017164 + AluSx SINE Alu 1 301 -11 1919 151 20 23 chr15 17678989 17679333 -68016421 - MER2 DNA MER2_type -1 343 1 2108 106 3 53 chr15 17680005 17680327 -68015427 - AluSc SINE Alu -3 306 1 242 250 0 0 chr15 17680740 17680804 -68014950 + L1ME3 LINE L1 6099 6162 0 1977 150 16 3 chr15 17680829 17681136 -68014618 + AluSq SINE Alu 1 311 -2 2058 118 30 0 chr15 17681392 17681689 -68014065 + AluSp SINE Alu 1 306 -7 2550 197 30 31 chr15 17681830 17682216 -68013538 + L1MB7 LINE L1 5573 5959 -225 2081 104 7 7 chr15 17682216 17682513 -68013241 + AluSx SINE Alu 1 297 -15 2550 197 30 31 chr15 17682513 17682729 -68013025 + L1MB7 LINE L1 5959 6174 -10 2397 96 3 0 chr15 17682845 17683147 -68012607 - AluSx SINE Alu -9 303 1 2300 98 0 10 chr15 17683149 17683454 -68012300 - AluSq SINE Alu -1 312 11 2052 98 79 0 chr15 17683742 17684019 -68011735 - AluSc SINE Alu -10 299 1 1608 184 3 31 chr15 17684159 17684479 -68011275 - AluJo SINE Alu -1 311 1 2161 91 0 42 chr15 17684574 17684882 -68010872 + AluY SINE Alu 1 295 -16 2001 115 28 7 chr15 17685402 17685713 -68010041 - AluSx SINE Alu 0 312 1 2412 71 0 40 chr15 17685780 17686104 -68009650 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 17686174 17686203 -68009551 + AT_rich Low_complexity Low_complexity 1 29 0 402 218 11 0 chr15 17686203 17686290 -68009464 - AluJb SINE Alu -205 107 20 1150 110 0 0 chr15 17687293 17687447 -68008307 - AluSg/x SINE Alu -11 299 146 27 0 0 0 chr15 17687929 17687956 -68007798 + AT_rich Low_complexity Low_complexity 1 27 0 32 26 0 0 chr15 17688047 17688086 -68007668 + AT_rich Low_complexity Low_complexity 1 39 0 1302 258 42 50 chr15 17688368 17688749 -68007005 + L1MB7 LINE L1 5582 5958 -226 2163 101 7 3 chr15 17688749 17689045 -68006709 + AluSx SINE Alu 1 297 -15 1302 258 42 50 chr15 17689045 17689261 -68006493 + L1MB7 LINE L1 5958 6174 -10 2361 96 3 0 chr15 17689378 17689679 -68006075 - AluSx SINE Alu -10 302 1 1027 113 0 0 chr15 17689682 17689815 -68005939 - AluSq/x SINE Alu -179 133 1 1633 94 17 0 chr15 17689825 17690058 -68005696 - L1PA10 LINE L1 -10 6158 5922 2428 80 3 0 chr15 17690107 17690407 -68005347 - AluSc SINE Alu -8 301 1 1696 212 6 80 chr15 17691010 17691230 -68004524 + L1MB7 LINE L1 5717 5952 -232 1540 176 81 3 chr15 17691230 17691514 -68004240 + AluJo SINE Alu 1 306 -6 1696 212 6 80 chr15 17691514 17691600 -68004154 + L1MB7 LINE L1 5952 6043 -141 2361 97 0 0 chr15 17691600 17691900 -68003854 + AluSg SINE Alu 1 300 -10 1696 212 6 80 chr15 17691900 17692037 -68003717 + L1MB7 LINE L1 6043 6125 -59 1660 161 69 0 chr15 17692037 17692328 -68003426 + AluJb SINE Alu 1 311 -1 1696 212 6 80 chr15 17692328 17692367 -68003387 + L1MB7 LINE L1 6125 6165 -19 531 312 92 25 chr15 17692565 17692920 -68002834 + L2 LINE L2 2668 3046 -267 263 257 157 36 chr15 17692924 17693064 -68002690 + L2 LINE L2 3156 3312 -1 1713 127 62 42 chr15 17693208 17693511 -68002243 + MER46B DNA MER2_type 1 188 -2543 2278 102 3 7 chr15 17693511 17693805 -68001949 + AluSq SINE Alu 1 293 -20 1713 127 62 42 chr15 17693805 17693855 -68001899 + MER46B DNA MER2_type 188 236 0 336 80 0 0 chr15 17695542 17695592 -68000162 - AluSq SINE Alu -1 300 251 1682 82 5 0 chr15 17695592 17695798 -67999956 - AluSq SINE Alu -106 207 1 1934 117 62 4 chr15 17695952 17696226 -67999528 - AluSq SINE Alu -23 290 1 1320 111 0 0 chr15 17696239 17696431 -67999323 + AluSq SINE Alu 117 308 0 1115 76 0 0 chr15 17696470 17696602 -67999152 - AluY SINE Alu -179 132 1 749 181 99 133 chr15 17696685 17696850 -67998904 + L1M4 LINE L1 5019 5188 -996 1453 191 8 8 chr15 17696850 17697112 -67998642 + AluJb SINE Alu 6 267 -45 749 181 99 133 chr15 17697112 17697416 -67998338 + L1M4 LINE L1 5188 5484 -700 1954 161 26 0 chr15 17697416 17697720 -67998034 + AluJo SINE Alu 1 312 0 285 185 46 69 chr15 17697781 17697889 -67997865 + L1MB8 LINE L1 6049 6155 -29 1661 178 14 3 chr15 17697952 17698244 -67997510 + AluJo SINE Alu 1 295 -17 2389 71 17 0 chr15 17698530 17698826 -67996928 - AluY SINE Alu -10 301 1 713 107 62 0 chr15 17699163 17699275 -67996479 - L1MB3 LINE L1 0 6183 6065 2127 131 3 3 chr15 17699278 17699583 -67996171 - AluSx SINE Alu -7 305 1 257 235 39 39 chr15 17699964 17700006 -67995748 + MER20B DNA MER1_type 437 478 -305 2468 57 3 7 chr15 17700006 17700304 -67995450 - AluY SINE Alu -14 297 1 257 235 39 39 chr15 17700304 17700363 -67995391 + MER20B DNA MER1_type 477 538 -245 506 167 0 0 chr15 17700367 17700445 -67995309 + AluSg1 SINE Alu 4 81 -228 560 118 0 0 chr15 17700565 17700641 -67995113 - FRAM SINE Alu -52 124 49 539 256 66 5 chr15 17700644 17700855 -67994899 + L1M4 LINE L1 2869 3092 -3054 1769 171 0 7 chr15 17700860 17701152 -67994602 + AluSx SINE Alu 1 290 -22 2127 107 10 3 chr15 17701299 17701598 -67994156 + AluSx SINE Alu 2 302 -10 659 186 11 90 chr15 17701598 17701735 -67994019 + L1MB7 LINE L1 6003 6124 -60 1702 158 65 0 chr15 17701735 17702027 -67993727 + AluJb SINE Alu 1 311 -1 659 186 11 90 chr15 17702027 17702066 -67993688 + L1MB7 LINE L1 6124 6165 -19 531 312 92 25 chr15 17702265 17702620 -67993134 + L2 LINE L2 2668 3046 -267 263 257 157 36 chr15 17702624 17702764 -67992990 + L2 LINE L2 3156 3312 -1 1743 128 62 40 chr15 17702908 17703210 -67992544 + MER46B DNA MER2_type 1 189 -2542 2337 98 0 7 chr15 17703210 17703505 -67992249 + AluSq SINE Alu 1 293 -20 1743 128 62 40 chr15 17703505 17703555 -67992199 + MER46B DNA MER2_type 189 236 0 336 80 0 0 chr15 17705236 17705286 -67990468 - AluSq SINE Alu -1 300 251 1728 82 0 0 chr15 17705286 17705493 -67990261 - AluSq SINE Alu -106 207 1 1934 117 62 4 chr15 17705647 17705921 -67989833 - AluSq SINE Alu -23 290 1 1320 111 0 0 chr15 17705934 17706126 -67989628 + AluSq SINE Alu 117 308 0 1115 76 0 0 chr15 17706165 17706297 -67989457 - AluY SINE Alu -179 132 1 710 188 99 133 chr15 17706381 17706546 -67989208 + L1M4 LINE L1 5019 5188 -996 1453 191 8 8 chr15 17706546 17706808 -67988946 + AluJb SINE Alu 6 267 -45 710 188 99 133 chr15 17706808 17707112 -67988642 + L1M4 LINE L1 5188 5484 -700 1783 185 26 0 chr15 17707112 17707415 -67988339 + AluJo SINE Alu 1 311 -1 180 0 0 0 chr15 17707416 17707436 -67988318 + (CA)n Simple_repeat Simple_repeat 1 20 0 285 185 46 69 chr15 17707475 17707583 -67988171 + L1MB8 LINE L1 6049 6155 -29 1721 177 10 3 chr15 17707646 17707940 -67987814 + AluJo SINE Alu 1 296 -16 2023 105 20 7 chr15 17708226 17708522 -67987232 - AluY SINE Alu -10 301 2 700 197 86 105 chr15 17708524 17708585 -67987169 + MER20B DNA MER1_type 480 541 -242 2125 128 0 3 chr15 17708585 17708875 -67986879 + AluSg SINE Alu 2 290 -20 700 197 86 105 chr15 17708875 17709061 -67986693 + MER20B DNA MER1_type 541 722 -61 2092 104 10 14 chr15 17709061 17709358 -67986396 + AluSx SINE Alu 2 297 -15 700 197 86 105 chr15 17709358 17709413 -67986341 + MER20B DNA MER1_type 722 777 -6 23 0 0 0 chr15 17709623 17709646 -67986108 + AT_rich Low_complexity Low_complexity 1 23 0 236 169 0 34 chr15 17709759 17709818 -67985936 + CT-rich Low_complexity Low_complexity 1 57 0 2138 127 0 3 chr15 17710234 17710525 -67985229 + AluSg SINE Alu 1 290 -20 797 185 99 66 chr15 17710530 17710710 -67985044 + MER20B DNA MER1_type 530 722 -61 2115 98 10 14 chr15 17710710 17711007 -67984747 + AluSx SINE Alu 1 296 -16 797 185 99 66 chr15 17711007 17711069 -67984685 + MER20B DNA MER1_type 722 780 -3 2221 112 0 3 chr15 17711712 17712015 -67983739 - AluSx SINE Alu -10 302 1 2121 94 50 17 chr15 17712259 17712556 -67983198 + AluSp SINE Alu 2 308 -5 2183 124 3 10 chr15 17712858 17713164 -67982590 - AluSx SINE Alu -8 304 1 458 257 140 23 chr15 17713714 17713885 -67981869 - MIR SINE MIR -44 218 28 1743 134 44 31 chr15 17713979 17714300 -67981454 - L1MC3 LINE L1 -745 7040 6716 878 129 8 8 chr15 17714300 17714432 -67981322 + FLAM_C SINE Alu 1 132 -11 1721 183 33 0 chr15 17714436 17714736 -67981018 + AluJo SINE Alu 1 310 -2 816 129 48 48 chr15 17714822 17714969 -67980785 + AluJb SINE Alu 152 298 -14 2453 178 102 37 chr15 17714969 17715537 -67980217 - L1MC3 LINE L1 -1059 6726 6122 1646 136 4 55 chr15 17715559 17715832 -67979922 + AluSx SINE Alu 30 288 -24 2061 138 0 0 chr15 17715842 17716144 -67979610 + AluSx SINE Alu 1 302 0 2230 92 0 19 chr15 17716144 17716459 -67979295 + AluSg SINE Alu 1 309 -1 539 168 11 0 chr15 17716496 17716591 -67979163 - LTR54B LTR ERV1 -399 99 4 929 227 13 24 chr15 17716591 17716877 -67978877 - MER57-int LTR ERV1 -655 6882 6646 292 325 32 43 chr15 17717092 17717280 -67978474 + AluSp SINE Alu 104 289 -14 1397 177 25 11 chr15 17717293 17717590 -67978164 + AluSq SINE Alu 3 303 0 2112 119 3 3 chr15 17717590 17717884 -67977870 + AluSg SINE Alu 1 294 -16 537 88 113 0 chr15 17717885 17717965 -67977789 - L1MC3 LINE L1 -1655 6130 6042 2533 61 0 10 chr15 17718078 17718390 -67977364 + AluY SINE Alu 1 309 -2 285 265 78 10 chr15 17718474 17718576 -67977178 - MIR SINE MIR 0 262 154 2079 109 21 0 chr15 17718942 17719225 -67976529 + AluSx SINE Alu 1 289 -23 1245 126 5 45 chr15 17719277 17719476 -67976278 + AluSx SINE Alu 1 191 -121 680 227 12 6 chr15 17719476 17719639 -67976115 + AluSx SINE Alu 56 219 -93 359 239 18 30 chr15 17719843 17720010 -67975744 + (TTA)n Simple_repeat Simple_repeat 1 165 0 1287 146 24 0 chr15 17720164 17720376 -67975378 + AluSq SINE Alu 85 301 -12 2148 114 0 10 chr15 17720413 17720710 -67975044 - AluSc SINE Alu -15 294 1 1796 154 33 0 chr15 17720712 17720985 -67974769 - AluJb SINE Alu -20 292 11 2228 110 3 0 chr15 17721428 17721720 -67974034 + AluSx SINE Alu 1 293 -19 2334 90 7 0 chr15 17721794 17722082 -67973672 + AluSq SINE Alu 8 297 -16 1446 188 19 8 chr15 17722200 17722466 -67973288 - AluJb SINE Alu -43 269 1 216 247 260 0 chr15 17722520 17722593 -67973161 + MIR SINE MIR 56 147 -115 2427 88 0 3 chr15 17722771 17723078 -67972676 + AluSc SINE Alu 1 306 -3 1816 161 13 7 chr15 17723180 17723479 -67972275 - AluJb SINE Alu -11 301 1 2268 69 7 14 chr15 17723524 17723832 -67971922 - AluSq SINE Alu 0 306 1 720 149 149 0 chr15 17723879 17724020 -67971734 - FRAM SINE Alu -14 162 1 2488 73 0 0 chr15 17724251 17724551 -67971203 + AluSg SINE Alu 1 300 -10 1295 199 107 44 chr15 17724655 17724691 -67971063 + L1MB7 LINE L1 5790 5822 -362 2332 94 0 0 chr15 17724691 17724990 -67970764 + AluSx SINE Alu 1 299 -13 1295 199 107 44 chr15 17724990 17725319 -67970435 + L1MB7 LINE L1 5822 6178 -6 23 86 0 0 chr15 17726265 17726323 -67969431 + GC_rich Low_complexity Low_complexity 1 58 0 215 160 20 0 chr15 17726425 17726475 -67969279 + (CGG)n Simple_repeat Simple_repeat 2 52 0 284 127 0 127 chr15 17727349 17727420 -67968334 - FLAM SINE Alu -22 111 50 322 188 0 94 chr15 17727420 17727505 -67968249 + FLAM SINE Alu 54 130 -3 200 311 98 41 chr15 17727608 17727730 -67968024 + L2 LINE L2 1801 1929 -1385 2201 82 6 25 chr15 17727753 17728068 -67967686 + AluSq SINE Alu 5 313 0 1846 104 10 55 chr15 17728086 17728393 -67967361 + AluSx SINE Alu 1 293 -19 2060 89 14 10 chr15 17728420 17728712 -67967042 + AluSg SINE Alu 1 293 -17 363 203 81 0 chr15 17728738 17728812 -67966942 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 17728812 17728944 -67966810 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 17728965 17729084 -67966670 - MER2 DNA MER2_type -139 206 83 2155 51 0 11 chr15 17729088 17729363 -67966391 + AluY SINE Alu 18 289 -22 2714 240 46 32 chr15 17729531 17730365 -67965389 + L1MC4a LINE L1 6857 7701 -107 2316 96 3 0 chr15 17730366 17730678 -67965076 + AluSp SINE Alu 1 313 0 2147 121 0 3 chr15 17730690 17731003 -67964751 + AluSx SINE Alu 1 312 0 2085 113 0 13 chr15 17731096 17731398 -67964356 + AluSx SINE Alu 1 298 -14 2028 109 17 0 chr15 17731877 17732171 -67963583 + AluSp SINE Alu 1 299 -14 1432 215 7 0 chr15 17732179 17732486 -67963268 + AluJo SINE Alu 1 309 -3 1996 134 7 0 chr15 17732490 17732788 -67962966 + AluSx SINE Alu 4 303 -9 647 201 59 0 chr15 17732823 17732992 -67962762 - L1M4 LINE L1 -797 5349 5171 955 163 0 18 chr15 17733005 17733171 -67962583 - AluSp SINE Alu -14 299 137 921 203 49 104 chr15 17733179 17733258 -67962496 - L1M4 LINE L1 -987 5159 5077 1318 172 0 105 chr15 17733258 17733583 -67962171 + AluJb SINE Alu 3 293 -19 921 203 49 104 chr15 17733583 17733829 -67961925 - L1M4 LINE L1 -1069 5077 4852 2315 74 3 0 chr15 17733836 17734135 -67961619 + AluY SINE Alu 1 300 -11 796 283 0 12 chr15 17734180 17734420 -67961334 - L1M4b LINE L1 -4992 1863 1627 1709 163 44 0 chr15 17734420 17734714 -67961040 - AluJb SINE Alu -5 307 1 2585 258 107 61 chr15 17734721 17735717 -67960037 - L1M4 LINE L1 -5619 1240 199 963 140 34 34 chr15 17735717 17735895 -67959859 - Tigger2a DNA MER2_type -256 178 1 454 218 40 0 chr15 17735895 17735996 -67959758 + L1M4 LINE L1 4311 4415 -1731 1187 127 10 63 chr15 17735996 17736047 -67959707 + MSTB LTR MaLR 6 58 -368 2146 98 3 35 chr15 17736047 17736365 -67959389 + AluSg SINE Alu 1 308 -2 1187 127 10 63 chr15 17736365 17736518 -67959236 + MSTB LTR MaLR 58 199 -227 2074 99 3 3 chr15 17736519 17736811 -67958943 + AluSc SINE Alu 1 292 -17 2210 93 3 0 chr15 17736812 17737114 -67958640 + AluSp SINE Alu 1 303 -10 2003 177 61 75 chr15 17737117 17737157 -67958597 + L1MC4 LINE L1 25 64 -8372 1791 137 23 13 chr15 17737157 17737457 -67958297 - AluSx SINE Alu -9 303 1 2003 177 61 75 chr15 17737457 17738088 -67957666 + L1MC4 LINE L1 64 703 -7733 2241 91 0 0 chr15 17738088 17738386 -67957368 - AluSp SINE Alu -13 300 3 2003 177 61 75 chr15 17738386 17738447 -67957307 + L1MC4 LINE L1 703 8055 -381 1106 72 0 0 chr15 17738451 17738590 -67957164 + AluSq/x SINE Alu 1 139 -173 1165 223 51 64 chr15 17738612 17739054 -67956700 + L1MDa LINE L1 278 724 -5816 2148 96 0 3 chr15 17739054 17739347 -67956407 + AluSg SINE Alu 5 296 -14 1165 223 51 64 chr15 17739347 17739726 -67956028 + L1MDa LINE L1 724 1991 -4549 1975 125 7 0 chr15 17739728 17740025 -67955729 + AluSx SINE Alu 1 299 -13 1103 208 66 52 chr15 17740025 17740283 -67955471 - L1M4b LINE L1 -5249 1610 1344 1758 174 7 0 chr15 17740283 17740582 -67955172 + AluJb SINE Alu 1 301 -11 1103 208 66 52 chr15 17740582 17740689 -67955065 - L1M4b LINE L1 -5515 1344 1240 700 191 26 7 chr15 17740701 17740853 -67954901 - AluSg/x SINE Alu -12 300 146 922 197 25 10 chr15 17740954 17741157 -67954597 - AluJo SINE Alu -106 206 1 238 294 245 7 chr15 17741211 17741354 -67954400 + MIR SINE MIR 56 232 -30 2208 104 0 3 chr15 17741462 17741770 -67953984 + AluSc SINE Alu 1 307 -2 518 311 23 27 chr15 17741902 17742162 -67953592 - AluSx SINE Alu -43 269 11 1151 137 0 0 chr15 17743035 17743218 -67952536 + AluSq SINE Alu 121 303 -10 1848 108 7 59 chr15 17743257 17743564 -67952190 + AluSx SINE Alu 3 293 -19 2060 89 14 10 chr15 17743591 17743883 -67951871 + AluSg SINE Alu 1 293 -17 342 216 81 0 chr15 17743909 17743983 -67951771 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 17743983 17744115 -67951639 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 17744136 17744255 -67951499 - MER2 DNA MER2_type -139 206 83 2235 50 4 7 chr15 17744259 17744539 -67951215 + AluY SINE Alu 18 296 -15 1322 198 7 17 chr15 17744967 17745265 -67950489 + AluSx SINE Alu 3 297 -15 331 269 108 82 chr15 17745704 17745972 -67949782 - L1M2 LINE L1 -4768 2081 1807 436 295 7 13 chr15 17746011 17746160 -67949594 - AluSq/x SINE Alu -154 148 1 1481 136 30 8 chr15 17746162 17746422 -67949332 - AluSp SINE Alu 0 313 52 1465 147 9 0 chr15 17746424 17746656 -67949098 + AluSg/x SINE Alu 69 302 -10 25 0 0 0 chr15 17746656 17746681 -67949073 + AT_rich Low_complexity Low_complexity 1 25 0 1812 158 7 0 chr15 17746733 17747056 -67948698 + AluSx SINE Alu 1 312 0 3031 149 31 38 chr15 17747057 17747287 -67948467 + MER41B LTR ERV1 1 231 -404 2384 81 0 0 chr15 17747287 17747596 -67948158 + AluSx SINE Alu 1 309 -3 3031 149 31 38 chr15 17747596 17747917 -67947837 + MER41B LTR ERV1 231 548 -87 326 95 0 48 chr15 17747929 17747992 -67947762 - L1MA3 LINE L1 0 6305 6246 2090 116 0 0 chr15 17748023 17748315 -67947439 + AluSq SINE Alu 5 296 -17 426 91 91 0 chr15 17748401 17748478 -67947276 - L1PB1 LINE L1 -4 6147 6064 296 188 29 14 chr15 17748705 17748774 -67946980 - L1PB1 LINE L1 -83 6068 5999 1810 138 62 0 chr15 17748777 17749066 -67946688 - AluSx SINE Alu -5 307 1 550 187 9 0 chr15 17749069 17749176 -67946578 + MER41B LTR ERV1 520 627 -8 451 277 0 0 chr15 17749188 17749318 -67946436 + L1M4 LINE L1 4672 4801 -1345 494 130 0 93 chr15 17749319 17749363 -67946391 + LTR8A LTR ERV1 1 47 -680 1687 166 16 3 chr15 17749363 17749671 -67946083 + AluSx SINE Alu 1 312 0 494 130 0 93 chr15 17749671 17749734 -67946020 + LTR8A LTR ERV1 47 98 -629 * 793 112 8 8 chr15 17749726 17749851 -67945903 + LTR9B LTR ERV1 437 561 -83 1734 102 0 0 chr15 17749902 17750148 -67945606 + AluSg SINE Alu 53 298 -12 1976 154 72 62 chr15 17750149 17750503 -67945251 + LTR8A LTR ERV1 214 508 -183 1731 136 25 7 chr15 17750503 17750789 -67944965 + AluSx SINE Alu 1 291 -21 1976 154 72 62 chr15 17750789 17750928 -67944826 + LTR8A LTR ERV1 508 644 -47 457 231 37 0 chr15 17751165 17751273 -67944481 + LTR8 LTR ERV1 533 644 -47 308 85 489 0 chr15 17751302 17751396 -67944358 - L1MB7 LINE L1 -12 6172 6033 210 71 0 0 chr15 17751428 17751456 -67944298 + (A)n Simple_repeat Simple_repeat 1 28 0 504 160 0 0 chr15 17751463 17751538 -67944216 + AluS SINE Alu 2 76 -236 2527 93 55 22 chr15 17751538 17751645 -67944109 - MER51B LTR ERV1 0 377 275 1473 199 13 0 chr15 17751645 17751951 -67943803 + AluSx SINE Alu 1 310 -2 2527 93 55 22 chr15 17751951 17752208 -67943546 - MER51B LTR ERV1 -102 275 1 883 141 6 113 chr15 17752210 17752387 -67943367 - MER51-int LTR ERV1 -1 7815 7658 669 254 27 27 chr15 17752387 17752611 -67943143 - AluSg/x SINE Alu -17 293 70 251 248 20 40 chr15 17753053 17753154 -67942600 - LTR54B LTR ERV1 -396 102 4 2850 116 55 38 chr15 17753154 17753485 -67942269 - MER57-int LTR ERV1 -655 6882 6539 2031 125 0 7 chr15 17753485 17753788 -67941966 - AluSg SINE Alu -9 301 1 2850 116 55 38 chr15 17753788 17753930 -67941824 - MER57-int LTR ERV1 -998 6539 6401 1093 154 13 53 chr15 17753933 17754160 -67941594 + AluSp SINE Alu 1 218 -95 297 155 0 0 chr15 17754203 17754261 -67941493 + (CA)n Simple_repeat Simple_repeat 2 59 0 962 169 0 6 chr15 17754261 17754444 -67941310 + AluY SINE Alu 128 309 -2 465 145 0 0 chr15 17755033 17755102 -67940652 + AluSp SINE Alu 228 296 -17 3024 125 16 41 chr15 17755102 17755196 -67940558 - MER57-int LTR ERV1 -1128 6409 6314 2083 72 0 0 chr15 17755196 17755461 -67940293 - AluSg SINE Alu -7 303 39 3024 125 16 41 chr15 17755461 17755991 -67939763 - MER57-int LTR ERV1 -1223 6314 5753 1612 134 3 82 chr15 17755999 17756328 -67939426 + AluSx SINE Alu 1 303 -9 275 107 191 95 chr15 17756328 17756412 -67939342 - MER57-int LTR ERV1 -2197 5340 5249 * 2092 94 5 4 chr15 17756411 17756801 -67938953 - MER57-int LTR ERV1 -2572 2645 2211 250 151 23 128 chr15 17756780 17756866 -67938888 - MER57-int LTR ERV1 -3239 1978 1902 * 1975 144 0 0 chr15 17756867 17757166 -67938588 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 17757239 17757262 -67938492 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 508 265 77 18 chr15 17757271 17757441 -67938313 - L2 LINE L2 -43 3229 3050 1503 94 0 0 chr15 17757590 17757793 -67937961 - AluSc SINE Alu -102 207 5 33 43 0 0 chr15 17758274 17758321 -67937433 + AT_rich Low_complexity Low_complexity 1 47 0 846 114 0 0 chr15 17758321 17758435 -67937319 - AluSg/x SINE Alu -26 286 173 1505 181 14 10 chr15 17758445 17758733 -67937021 - AluJo SINE Alu -23 289 1 1676 160 0 4 chr15 17758819 17759100 -67936654 - AluSx SINE Alu -2 310 31 395 335 54 54 chr15 17759642 17759955 -67935799 + L2 LINE L2 2384 2696 -618 482 162 0 0 chr15 17759971 17760045 -67935709 + AluSp/q SINE Alu 218 291 -22 180 0 0 0 chr15 17760052 17760072 -67935682 + (TA)n Simple_repeat Simple_repeat 1 20 0 245 298 36 12 chr15 17760177 17760261 -67935493 + LTR67 LTR ERVL 428 513 -44 1362 138 152 9 chr15 17760263 17760551 -67935203 + MSTA LTR MaLR 1 335 -91 2061 133 0 0 chr15 17760727 17761029 -67934725 - AluSx SINE Alu -10 302 1 228 65 32 0 chr15 17761029 17761060 -67934694 + MSTA LTR MaLR 324 355 -9 371 280 126 7 chr15 17761354 17761497 -67934257 + L2 LINE L2 3110 3269 -3 1882 132 14 0 chr15 17761517 17761805 -67933949 + AluSx SINE Alu 4 295 -17 345 237 79 72 chr15 17761917 17762186 -67933568 - AluY SINE Alu -61 240 1 323 336 51 14 chr15 17762870 17763084 -67932670 - AluY SINE Alu -79 222 1 1440 171 110 13 chr15 17763086 17763396 -67932358 - L1PA16 LINE L1 -7 6159 5820 2417 67 0 3 chr15 17763527 17763840 -67931914 - AluSx SINE Alu 0 312 1 741 196 20 0 chr15 17764032 17764180 -67931574 - L1ME1 LINE L1 -5 6161 6011 1302 94 19 61 chr15 17764180 17764305 -67931449 - MER41B LTR ERV1 0 635 521 2467 53 0 0 chr15 17764305 17764609 -67931145 + AluY SINE Alu 1 304 -7 1302 94 19 61 chr15 17764609 17764695 -67931059 - MER41B LTR ERV1 -114 521 433 1044 209 21 101 chr15 17764695 17764754 -67931000 - L1M4 LINE L1 -2360 3786 3724 1818 139 14 10 chr15 17764754 17765049 -67930705 + AluJb SINE Alu 1 296 -16 1044 209 21 101 chr15 17765049 17765221 -67930533 - L1M4 LINE L1 -2422 3724 3594 1676 158 7 7 chr15 17765221 17765513 -67930241 - AluJb SINE Alu -20 292 1 1044 209 21 101 chr15 17765513 17765657 -67930097 - L1M4 LINE L1 -2552 3594 3440 954 215 39 8 chr15 17765663 17765919 -67929835 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 17765919 17765948 -67929806 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1023 153 6 0 chr15 17765948 17766111 -67929643 - AluSq SINE Alu -30 283 120 1075 154 0 0 chr15 17766111 17766286 -67929468 - AluSg/x SINE Alu -1 311 137 374 149 0 15 chr15 17766296 17766363 -67929391 - AluSq SINE Alu -100 203 138 1639 169 0 0 chr15 17766367 17766640 -67929114 - AluSx SINE Alu -16 296 24 42 48 0 0 chr15 17766982 17767045 -67928709 + AT_rich Low_complexity Low_complexity 1 63 0 1713 123 19 4 chr15 17767732 17767993 -67927761 + AluSx SINE Alu 3 267 -45 47 0 0 0 chr15 17767993 17768040 -67927714 + AT_rich Low_complexity Low_complexity 1 47 0 2411 64 0 0 chr15 17768040 17768338 -67927416 - AluY SINE Alu -13 298 1 1440 171 110 13 chr15 17768340 17768650 -67927104 - L1PA16 LINE L1 -7 6159 5820 2428 67 0 3 chr15 17768785 17769098 -67926656 - AluSx SINE Alu 0 312 1 741 196 20 0 chr15 17769290 17769438 -67926316 - L1ME1 LINE L1 -5 6161 6011 1302 94 19 61 chr15 17769438 17769563 -67926191 - MER41B LTR ERV1 0 635 521 2458 53 0 0 chr15 17769563 17769866 -67925888 + AluY SINE Alu 1 303 -8 1302 94 19 61 chr15 17769866 17769952 -67925802 - MER41B LTR ERV1 -114 521 433 1110 216 22 74 chr15 17769952 17770011 -67925743 - L1M4 LINE L1 -2360 3786 3725 1783 138 14 14 chr15 17770011 17770307 -67925447 + AluJb SINE Alu 1 296 -16 1110 216 22 74 chr15 17770307 17770468 -67925286 - L1M4 LINE L1 -2421 3725 3590 1676 158 7 7 chr15 17770468 17770760 -67924994 - AluJb SINE Alu -20 292 1 1110 216 22 74 chr15 17770760 17770904 -67924850 - L1M4 LINE L1 -2556 3590 3440 954 215 39 8 chr15 17770910 17771166 -67924588 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 17771166 17771195 -67924559 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1023 153 6 0 chr15 17771195 17771358 -67924396 - AluSq SINE Alu -30 283 120 1609 127 0 0 chr15 17771358 17771602 -67924152 - AluSg/x SINE Alu 0 312 69 2162 95 24 0 chr15 17771610 17771904 -67923850 - AluSx SINE Alu -11 301 1 2162 116 0 3 chr15 17771947 17772249 -67923505 - AluSx SINE Alu -11 301 1 344 320 26 0 chr15 17772257 17772410 -67923344 - L1M4 LINE L1 -2701 3445 3289 1972 125 0 10 chr15 17772429 17772734 -67923020 - AluSx SINE Alu -10 302 1 1116 172 14 0 chr15 17772817 17773026 -67922728 + AluSp SINE Alu 1 212 -101 214 191 48 0 chr15 17773076 17773118 -67922636 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 1998 116 0 0 chr15 17774004 17774288 -67921466 - AluSc SINE Alu -20 289 6 2043 148 0 0 chr15 17774357 17774668 -67921086 + AluSx SINE Alu 1 311 -1 248 171 171 49 chr15 17774861 17774943 -67920811 + L1ME LINE L1 5729 5820 -301 689 235 99 0 chr15 17775129 17775291 -67920463 - FRAM SINE Alu -4 172 1 1881 159 7 0 chr15 17775336 17775644 -67920110 + AluSx SINE Alu 1 310 -2 476 103 0 56 chr15 17775644 17775751 -67920003 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 1824 145 0 24 chr15 17775764 17776061 -67919693 + AluSx SINE Alu 1 290 -22 379 278 154 96 chr15 17776073 17776115 -67919639 + L1ME4a LINE L1 5768 5806 -315 24 32 0 0 chr15 17776115 17776146 -67919608 + AT_rich Low_complexity Low_complexity 1 31 0 379 278 154 96 chr15 17776146 17776397 -67919357 + L1ME4a LINE L1 5806 6110 -11 1208 104 0 0 chr15 17777212 17777385 -67918369 - AluSg/x SINE Alu -6 304 132 2064 128 0 0 chr15 17777385 17777681 -67918073 - AluSq SINE Alu -17 296 1 1930 134 7 0 chr15 17777681 17777972 -67917782 - AluSx SINE Alu -18 294 2 2285 82 0 0 chr15 17777982 17778274 -67917480 - AluSg SINE Alu -18 292 1 286 61 0 8 chr15 17778374 17778414 -67917340 + AluS SINE Alu 56 89 -213 2167 89 7 13 chr15 17779137 17779440 -67916314 + AluSg SINE Alu 1 301 -9 366 161 0 0 chr15 17779537 17779593 -67916161 + MER66A LTR ERV1 283 338 -140 24 32 0 0 chr15 17779593 17779624 -67916130 + AT_rich Low_complexity Low_complexity 1 31 0 2149 80 3 10 chr15 17780790 17781089 -67914665 - AluY SINE Alu -14 297 1 895 169 7 0 chr15 17781471 17781653 -67914101 - AluJo SINE Alu 0 309 127 1823 145 0 24 chr15 17781657 17781953 -67913801 - AluJb SINE Alu -22 290 2 1247 149 4 55 chr15 17782267 17782334 -67913420 - MER2 DNA MER2_type -7 338 269 2076 123 3 0 chr15 17782334 17782634 -67913120 + AluSx SINE Alu 12 312 0 1247 149 4 55 chr15 17782634 17782801 -67912953 - MER2 DNA MER2_type -76 269 116 263 177 0 0 chr15 17782831 17782893 -67912861 + MER2 DNA MER2_type 98 159 -186 2162 98 0 38 chr15 17782916 17783025 -67912729 - AluSq SINE Alu -9 304 192 2247 82 26 0 chr15 17783025 17783329 -67912425 - AluSp SINE Alu -1 312 1 2162 98 0 38 chr15 17783329 17783535 -67912219 - AluSq SINE Alu -121 192 1 550 167 11 11 chr15 17783564 17783654 -67912100 - MER2 DNA MER2_type -255 90 1 2140 102 3 3 chr15 17783878 17784181 -67911573 + AluSp SINE Alu 1 303 -10 943 178 99 16 chr15 17784241 17784432 -67911322 - MER58C DNA MER1_type -8 207 1 293 226 12 0 chr15 17784443 17784527 -67911227 + C-rich Low_complexity Low_complexity 4 88 0 1543 137 4 4 chr15 17784530 17784779 -67910975 - AluSq SINE Alu -6 307 59 945 166 6 0 chr15 17785172 17785315 -67910439 + FRAM SINE Alu 1 23 -153 2156 106 3 0 chr15 17785315 17785616 -67910138 - AluSc SINE Alu -6 303 2 945 166 6 0 chr15 17785616 17785635 -67910119 + FRAM SINE Alu 23 40 0 342 109 0 0 chr15 17785858 17785904 -67909850 + Alu SINE Alu 1 46 -256 1700 106 4 4 chr15 17785904 17786141 -67909613 - AluSx SINE Alu -75 237 1 1925 130 7 3 chr15 17786152 17786453 -67909301 - AluSg SINE Alu -8 302 1 1784 149 0 10 chr15 17786700 17787002 -67908752 + AluJo SINE Alu 2 300 -12 421 287 155 0 chr15 17787021 17787195 -67908559 + MIR SINE MIR 46 246 -16 587 103 0 0 chr15 17787267 17787345 -67908409 + AluJ/FLAM SINE Alu 2 79 -233 231 324 94 56 chr15 17787345 17787558 -67908196 - L2 LINE L2 -1317 1997 1777 1952 92 43 3 chr15 17787716 17787998 -67907756 + AluSc SINE Alu 1 293 -16 1044 178 126 25 chr15 17788741 17789027 -67906727 - MER46C DNA MER2_type -4 334 20 1970 135 0 7 chr15 17789767 17790070 -67905684 - AluSx SINE Alu -11 301 1 827 76 0 34 chr15 17790071 17790190 -67905564 - AluSq/x SINE Alu -177 135 21 2012 116 0 19 chr15 17790439 17790749 -67905005 + AluSc SINE Alu 1 304 -5 2183 97 3 0 chr15 17791625 17791923 -67903831 - AluSp SINE Alu -14 299 1 2360 76 0 0 chr15 17792564 17792868 -67902886 - AluY SINE Alu -7 304 1 1439 226 113 31 chr15 17792907 17793228 -67902526 - L2 LINE L2 -4 3309 3016 2309 72 0 0 chr15 17793228 17793521 -67902233 + AluY SINE Alu 1 293 -18 1439 226 113 31 chr15 17793521 17793745 -67902009 - L2 LINE L2 -297 3016 2714 2005 114 3 10 chr15 17793745 17794044 -67901710 - AluSx SINE Alu -15 297 1 1439 226 113 31 chr15 17794044 17794066 -67901688 - L2 LINE L2 -599 2714 2695 881 65 40 0 chr15 17794085 17794233 -67901521 - AluY SINE Alu 0 306 154 1961 123 3 13 chr15 17794730 17795038 -67900716 - AluSx SINE Alu -7 305 1 1582 46 25 0 chr15 17795079 17795300 -67900454 - AluY SINE Alu 0 306 81 807 211 40 15 chr15 17795351 17795550 -67900204 - L1MB8 LINE L1 -6 6172 5969 1039 136 113 0 chr15 17795552 17795764 -67899990 + AluSq SINE Alu 86 317 0 2214 106 3 0 chr15 17795767 17796069 -67899685 + AluSg SINE Alu 1 303 -7 3283 132 21 67 chr15 17796073 17796218 -67899536 - L1MB8 LINE L1 -254 5924 5774 1856 151 0 7 chr15 17796218 17796509 -67899245 - AluJo SINE Alu -23 289 1 3283 132 21 67 chr15 17796509 17796798 -67898956 - L1MB8 LINE L1 -404 5774 5525 2256 63 0 20 chr15 17796798 17797098 -67898656 - AluY SINE Alu -17 294 1 3283 132 21 67 chr15 17797098 17797291 -67898463 - L1MB8 LINE L1 -653 5525 5325 1609 175 0 14 chr15 17797291 17797588 -67898166 - AluJo SINE Alu -19 293 1 789 167 0 0 chr15 17797589 17797721 -67898033 - AluJo SINE Alu -176 136 5 334 178 14 41 chr15 17797721 17797794 -67897960 - L1MB8 LINE L1 -848 5336 5266 1364 147 12 126 chr15 17797855 17798212 -67897542 + AluJb SINE Alu 1 302 0 1343 152 56 24 chr15 17798606 17798856 -67896898 - AluJb SINE Alu -54 258 1 1766 124 16 46 chr15 17799051 17799357 -67896397 + AluSq SINE Alu 1 297 -16 1203 200 52 30 chr15 17799821 17800126 -67895628 - AluJo SINE Alu 0 312 1 1981 107 11 0 chr15 17800488 17800797 -67894957 - AluSx SINE Alu 0 312 1 739 157 0 50 chr15 17800879 17801019 -67894735 - FLAM_C SINE Alu 0 133 1 1926 131 0 0 chr15 17801229 17801512 -67894242 - AluSx SINE Alu -2 310 28 2066 107 13 13 chr15 17801699 17802008 -67893746 - AluSp SINE Alu -4 309 1 2093 92 3 0 chr15 17802019 17802301 -67893453 - AluSg SINE Alu -22 288 6 1066 152 0 0 chr15 17803079 17803250 -67892504 + AluSg/x SINE Alu 136 306 -6 368 256 23 52 chr15 17803319 17803368 -67892386 - HAL1 LINE L1 -116 2391 2342 2013 119 7 19 chr15 17803368 17803678 -67892076 - AluSx SINE Alu -6 306 1 368 256 23 52 chr15 17803678 17803800 -67891954 - HAL1 LINE L1 -165 2342 2225 845 120 8 0 chr15 17803861 17803986 -67891768 + AluSg/x SINE Alu 176 301 -11 355 235 104 0 chr15 17803992 17804107 -67891647 - HAL1 LINE L1 -351 2156 2030 246 207 0 0 chr15 17804108 17804166 -67891588 + CT-rich Low_complexity Low_complexity 3 60 0 260 62 0 0 chr15 17804168 17804200 -67891554 - AluJb SINE Alu -14 288 257 962 173 6 6 chr15 17804202 17804370 -67891384 - AluJb SINE Alu -144 168 1 315 214 43 0 chr15 17804558 17804628 -67891126 - HAL1 LINE L1 -590 1917 1845 2614 137 33 5 chr15 17804640 17805064 -67890690 - MER39B LTR ERV1 0 653 218 278 154 0 31 chr15 17805065 17805130 -67890624 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 854 144 25 56 chr15 17805133 17805293 -67890461 - AluJo/FRAM SINE Alu -24 288 134 2120 118 0 0 chr15 17805293 17805597 -67890157 - AluSx SINE Alu -8 304 1 2170 96 3 10 chr15 17805599 17805902 -67889852 - AluSx SINE Alu -11 301 1 2141 123 0 0 chr15 17805921 17806231 -67889523 - AluSx SINE Alu -2 310 1 1294 133 19 19 chr15 17806231 17806441 -67889313 - MER39B LTR ERV1 -443 210 1 272 275 120 54 chr15 17806443 17806714 -67889040 - HAL1 LINE L1 -1913 594 272 23 0 0 0 chr15 17806781 17806804 -67888950 + AT_rich Low_complexity Low_complexity 1 23 0 1099 151 0 0 chr15 17806930 17807102 -67888652 - AluSg/x SINE Alu -14 298 127 1367 174 40 22 chr15 17807102 17807377 -67888377 + AluJo SINE Alu 6 285 -27 231 33 0 0 chr15 17807377 17807388 -67888366 + (TA)n Simple_repeat Simple_repeat 1 11 -19 2047 123 0 7 chr15 17807388 17807697 -67888057 + AluSx SINE Alu 2 308 -4 231 33 0 0 chr15 17807697 17807715 -67888039 + (TA)n Simple_repeat Simple_repeat 10 30 0 752 162 7 22 chr15 17807857 17807993 -67887761 - AluJo SINE Alu -177 135 2 2186 109 0 0 chr15 17808076 17808378 -67887376 + AluSg SINE Alu 1 302 -8 2006 155 27 57 chr15 17808632 17808690 -67887064 - MER21B LTR ERV1 -1 862 804 2190 102 3 0 chr15 17808690 17808984 -67886770 + AluSx SINE Alu 1 295 -17 2006 155 27 57 chr15 17808984 17809326 -67886428 - MER21B LTR ERV1 -59 804 474 1890 138 0 10 chr15 17809334 17809623 -67886131 - AluSx SINE Alu -26 286 1 785 162 0 52 chr15 17809656 17809810 -67885944 + AluJb SINE Alu 3 148 -164 1657 160 0 20 chr15 17809951 17810244 -67885510 + AluSx SINE Alu 3 289 -23 517 59 39 65 chr15 17810244 17810603 -67885151 + (TA)n Simple_repeat Simple_repeat 1 349 0 212 100 80 0 chr15 17810627 17810677 -67885077 + (TA)n Simple_repeat Simple_repeat 2 55 0 608 184 191 7 chr15 17810680 17810816 -67884938 - MER21B LTR ERV1 -400 463 303 709 199 0 15 chr15 17810858 17810989 -67884765 + FLAM_C SINE Alu 1 129 -4 1923 116 42 0 chr15 17810994 17811278 -67884476 + AluSx SINE Alu 1 296 -16 1425 131 143 12 chr15 17811278 17811537 -67884217 + AluSg1 SINE Alu 1 293 -16 24 0 0 0 chr15 17811537 17811561 -67884193 + AT_rich Low_complexity Low_complexity 1 24 0 1513 174 11 4 chr15 17811562 17811837 -67883917 - AluJo SINE Alu -35 277 1 1798 170 0 43 chr15 17811839 17812163 -67883591 - MER21B LTR ERV1 -547 316 7 995 146 0 0 chr15 17812191 17812349 -67883405 - AluSp/q SINE Alu 0 313 156 1643 78 91 8 chr15 17812350 17812593 -67883161 + AluSq SINE Alu 31 293 -20 2102 93 19 26 chr15 17812717 17813028 -67882726 + AluY SINE Alu 1 309 -2 1651 173 3 0 chr15 17813125 17813414 -67882340 + AluJb SINE Alu 5 294 -18 690 115 0 0 chr15 17813416 17813512 -67882242 + AluSq/x SINE Alu 38 133 -180 1771 133 14 0 chr15 17813515 17813644 -67882110 + AluSx SINE Alu 1 127 -175 2170 83 0 7 chr15 17813644 17813933 -67881821 + AluSc SINE Alu 15 301 -8 1771 133 14 0 chr15 17813933 17814101 -67881653 + AluSx SINE Alu 127 302 0 23 0 0 0 chr15 17814559 17814582 -67881172 + AT_rich Low_complexity Low_complexity 1 23 0 467 243 0 0 chr15 17815003 17815106 -67880648 - FLAM_A SINE Alu -5 137 35 2314 148 61 63 chr15 17815591 17815935 -67879819 - MLT1D LTR MaLR 0 505 161 2366 87 0 0 chr15 17815935 17816246 -67879508 + AluY SINE Alu 1 311 0 2314 148 61 63 chr15 17816246 17816407 -67879347 - MLT1D LTR MaLR -344 161 1 29 0 0 0 chr15 17816412 17816441 -67879313 + AT_rich Low_complexity Low_complexity 1 29 0 1682 163 0 23 chr15 17816488 17816789 -67878965 - AluJo SINE Alu -18 294 1 546 211 9 0 chr15 17816791 17816900 -67878854 - FLAM_A SINE Alu -12 130 21 1734 154 6 41 chr15 17817034 17817163 -67878591 + AluJo SINE Alu 6 138 -174 2279 44 41 3 chr15 17817163 17817456 -67878298 + AluY SINE Alu 1 304 -7 1734 154 6 41 chr15 17817456 17817644 -67878110 + AluJo SINE Alu 138 312 0 1930 127 7 7 chr15 17817651 17817951 -67877803 + AluSc SINE Alu 3 302 -7 1730 188 0 6 chr15 17817978 17818292 -67877462 + 7SLRNA srpRNA srpRNA 1 312 -8 1206 110 0 0 chr15 17818296 17818460 -67877294 + AluSg/x SINE Alu 130 293 -19 1995 93 7 47 chr15 17819018 17819348 -67876406 + AluSx SINE Alu 1 318 0 2279 88 0 25 chr15 17819730 17820047 -67875707 - AluSc SINE Alu 0 309 1 1772 128 14 14 chr15 17820536 17820859 -67874895 - AluSx SINE Alu 0 323 1 521 286 24 9 chr15 17820868 17821078 -67874676 - AluSq SINE Alu -25 288 76 573 138 0 0 chr15 17822077 17822157 -67873597 - AluSq SINE Alu -230 82 3 1751 153 0 0 chr15 17822161 17822443 -67873311 - AluSx SINE Alu -18 294 13 1754 104 0 4 chr15 17822500 17822749 -67873005 + AluSx SINE Alu 64 311 -1 2000 131 7 0 chr15 17822849 17823154 -67872600 + AluSq SINE Alu 1 307 -6 293 226 12 0 chr15 17823157 17823241 -67872513 + G-rich Low_complexity Low_complexity 4 88 0 916 183 99 16 chr15 17823252 17823443 -67872311 + MER58C DNA MER1_type 1 207 -8 338 270 139 38 chr15 17823452 17823503 -67872251 + L1M4 LINE L1 3697 3741 -2405 2169 98 3 3 chr15 17823503 17823808 -67871946 - AluSp SINE Alu -8 305 1 338 270 139 38 chr15 17823808 17823993 -67871761 + L1M4 LINE L1 3741 3957 -2189 550 167 11 11 chr15 17824032 17824122 -67871632 + MER2 DNA MER2_type 1 90 -255 2162 98 0 38 chr15 17824151 17824357 -67871397 + AluSq SINE Alu 1 192 -121 2276 79 26 0 chr15 17824357 17824661 -67871093 + AluSp SINE Alu 1 312 -1 2162 98 0 38 chr15 17824661 17824770 -67870984 + AluSq SINE Alu 192 304 -9 263 177 0 0 chr15 17824793 17824855 -67870899 - MER2 DNA MER2_type -186 159 98 1278 154 18 9 chr15 17824885 17825038 -67870716 + MER2 DNA MER2_type 116 273 -72 2055 123 3 7 chr15 17825038 17825340 -67870414 - AluSx SINE Alu 0 312 12 1278 154 18 9 chr15 17825340 17825407 -67870347 + MER2 DNA MER2_type 273 338 -7 1823 145 0 24 chr15 17825721 17826017 -67869737 + AluJb SINE Alu 2 290 -22 892 181 0 0 chr15 17826021 17826204 -67869550 + AluJo SINE Alu 127 309 0 2415 74 0 7 chr15 17826586 17826883 -67868871 + AluY SINE Alu 1 295 -16 24 32 0 0 chr15 17828049 17828080 -67867674 + AT_rich Low_complexity Low_complexity 1 31 0 360 135 0 0 chr15 17828080 17828132 -67867622 - MER66B LTR ERV1 -140 346 295 2296 75 30 3 chr15 17828233 17828528 -67867226 - AluSx SINE Alu -9 303 1 1309 173 112 61 chr15 17828666 17829094 -67866660 - LTR7 LTR ERV1 0 450 1 2383 99 0 0 chr15 17829347 17829649 -67866105 + AluSx SINE Alu 3 304 -8 2010 92 73 9 chr15 17831309 17831675 -67864079 - LTR7 LTR ERV1 0 450 1 235 227 62 62 chr15 17831711 17831808 -67863946 + Charlie4 DNA MER1_type 1865 1961 0 2076 108 3 26 chr15 17832372 17832679 -67863075 + AluSx SINE Alu 1 300 -12 2278 221 84 31 chr15 17832700 17833108 -67862646 - L1MA9 LINE L1 -30 6282 5824 1678 123 70 66 chr15 17833108 17833409 -67862345 - AluSx SINE Alu -10 302 1 2278 221 84 31 chr15 17833409 17833666 -67862088 - L1MA9 LINE L1 -488 5824 5582 1129 115 0 6 chr15 17833667 17833824 -67861930 + AluSg/x SINE Alu 134 289 -21 355 187 0 13 chr15 17833824 17833899 -67861855 - L1MA9 LINE L1 -717 5586 5513 2300 96 7 0 chr15 17833934 17834225 -67861529 - AluSq SINE Alu -20 293 1 1250 173 82 61 chr15 17834291 17834709 -67861045 - MLT1C LTR MaLR -1 389 1 706 172 17 0 chr15 17834780 17834896 -67860858 + FAM SINE Alu 23 140 -45 1191 171 26 8 chr15 17834896 17835130 -67860624 + L1MB3 LINE L1 5943 6180 -3 223 140 0 35 chr15 17835154 17835211 -67860543 + (TA)n Simple_repeat Simple_repeat 1 55 0 1837 158 38 0 chr15 17835371 17835662 -67860092 + AluSq SINE Alu 1 302 -11 486 0 0 0 chr15 17835662 17835716 -67860038 + (TA)n Simple_repeat Simple_repeat 2 55 0 396 212 71 0 chr15 17835777 17835862 -67859892 + L1MC4a LINE L1 5833 5923 -1885 1848 143 31 0 chr15 17836114 17836407 -67859347 - AluSq SINE Alu -9 304 3 1014 125 65 12 chr15 17836411 17836579 -67859175 - AluSg/x SINE Alu -1 309 133 1186 246 163 18 chr15 17836751 17836895 -67858859 - MLT1F LTR MaLR 0 542 420 2322 84 0 10 chr15 17836895 17837191 -67858563 + AluY SINE Alu 1 293 -18 1186 246 163 18 chr15 17837191 17837433 -67858321 - MLT1F LTR MaLR -122 420 100 2218 101 14 0 chr15 17837466 17837763 -67857991 - AluY SINE Alu -10 301 1 412 235 53 88 chr15 17837767 17837937 -67857817 - MER21B LTR ERV1 -149 714 551 680 201 107 49 chr15 17837941 17838013 -67857741 - L1 LINE L1 -3032 3114 3048 2173 138 0 0 chr15 17838013 17838311 -67857443 - AluSx SINE Alu -14 298 1 978 178 0 0 chr15 17838314 17838477 -67857277 - FAM SINE Alu -12 163 1 680 201 107 49 chr15 17838477 17838644 -67857110 - L1 LINE L1 -3099 3047 2857 571 192 0 10 chr15 17838726 17838830 -67856924 - MLT1F LTR MaLR -439 103 1 1750 277 0 64 chr15 17838877 17839205 -67856549 - AluSp SINE Alu -6 307 1 237 191 0 0 chr15 17839408 17839450 -67856304 + Alu SINE Alu 2 43 -260 283 167 0 0 chr15 17839551 17839593 -67856161 + Alu SINE Alu 247 288 -12 2091 144 0 7 chr15 17839679 17839984 -67855770 - AluSx SINE Alu -5 307 5 897 262 118 42 chr15 17839989 17840502 -67855252 - L2 LINE L2 -8 3305 2763 1635 182 17 7 chr15 17840527 17840818 -67854936 - AluJo SINE Alu -16 296 3 2070 100 0 7 chr15 17841042 17841323 -67854431 - AluSg SINE Alu -31 279 1 631 116 0 74 chr15 17841333 17841454 -67854300 - AluSc SINE Alu -1 308 197 1108 180 109 8 chr15 17841800 17842098 -67853656 - L1MB4 LINE L1 -3 6177 5852 1983 114 10 17 chr15 17842132 17842421 -67853333 - AluSq SINE Alu -26 287 1 1960 128 10 13 chr15 17842661 17842965 -67852789 - AluJo SINE Alu -9 303 1 2265 131 0 0 chr15 17842990 17843302 -67852452 + AluSx SINE Alu 1 312 0 2007 136 0 0 chr15 17843470 17843777 -67851977 - AluSg SINE Alu 0 307 1 2231 115 3 0 chr15 17844441 17844736 -67851018 + AluSx SINE Alu 1 296 -16 952 119 33 7 chr15 17844944 17845118 -67850636 - AluSg/x SINE Alu 0 306 129 26 50 0 0 chr15 17845654 17845694 -67850060 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 17846342 17846366 -67849388 + (TA)n Simple_repeat Simple_repeat 2 25 0 1739 130 0 0 chr15 17846818 17847048 -67848706 - AluSx SINE Alu -30 282 53 252 0 0 0 chr15 17847800 17847828 -67847926 + (A)n Simple_repeat Simple_repeat 1 28 0 2170 123 3 10 chr15 17848042 17848351 -67847403 + AluSc SINE Alu 1 307 -2 239 69 0 0 chr15 17850999 17851028 -67844726 - Alu SINE Alu -262 37 9 1673 89 0 14 chr15 17851029 17851242 -67844512 - AluSx SINE Alu -102 210 1 547 167 11 11 chr15 17851271 17851361 -67844393 - MER2 DNA MER2_type -255 90 1 2026 125 3 10 chr15 17851585 17851889 -67843865 + AluSp SINE Alu 1 302 -11 703 233 90 11 chr15 17851951 17852140 -67843614 - MER58C DNA MER1_type -8 207 4 630 245 108 29 chr15 17852755 17852996 -67842758 - MIR SINE MIR -2 260 1 228 37 0 0 chr15 17853141 17853188 -67842566 - Alu SINE Alu 0 300 254 2237 102 7 0 chr15 17853226 17853520 -67842234 - AluSg SINE Alu -14 296 1 1051 193 107 59 chr15 17853630 17853900 -67841854 + AluJb SINE Alu 1 283 -19 1889 122 27 14 chr15 17853929 17854225 -67841529 + AluSx SINE Alu 1 300 -12 2139 120 7 0 chr15 17854621 17854913 -67840841 - AluSx SINE Alu -18 294 1 209 353 88 10 chr15 17854939 17855041 -67840713 + L2 LINE L2 3127 3236 -36 1335 154 124 29 chr15 17855799 17856072 -67839682 - AluJo SINE Alu -8 304 6 2399 76 3 13 chr15 17856261 17856563 -67839191 + AluY SINE Alu 1 299 -12 291 333 0 0 chr15 17856876 17856951 -67838803 - L1M4b LINE L1 -6260 599 525 274 135 62 10 chr15 17856951 17857015 -67838739 + AluSg/x SINE Alu 162 207 -93 1271 132 24 141 chr15 17857017 17857350 -67838404 + AluYb8 SINE Alu 16 309 -9 376 235 185 0 chr15 17857350 17857469 -67838285 - L1M4b LINE L1 -6708 151 11 1910 124 28 21 chr15 17857499 17857782 -67837972 - AluSg SINE Alu -25 285 1 2019 104 71 0 chr15 17857790 17858070 -67837684 - AluSp SINE Alu -13 300 1 2251 121 3 0 chr15 17858070 17858375 -67837379 - AluSp SINE Alu -5 308 3 1258 89 0 0 chr15 17858385 17858543 -67837211 - AluSg/x SINE Alu -21 289 132 2345 90 3 0 chr15 17858544 17858844 -67836910 - AluY SINE Alu -10 301 1 1376 150 37 129 chr15 17859409 17859788 -67835966 - MER2 DNA MER2_type 0 344 1 2365 76 10 0 chr15 17860025 17860315 -67835439 - AluSx SINE Alu -19 293 1 774 122 0 116 chr15 17860440 17860552 -67835202 + AluJo SINE Alu 5 98 -214 2282 118 0 0 chr15 17860552 17860848 -67834906 - AluSx SINE Alu -16 296 1 774 122 0 116 chr15 17860848 17860882 -67834872 + AluJo SINE Alu 98 134 -178 2143 125 3 0 chr15 17860994 17861291 -67834463 + AluSx SINE Alu 1 298 -14 2087 67 60 25 chr15 17861714 17861998 -67833756 + AluY SINE Alu 6 299 -12 922 194 0 18 chr15 17862001 17862171 -67833583 + AluSg/x SINE Alu 129 295 -17 2473 79 0 3 chr15 17862354 17862657 -67833097 + AluY SINE Alu 1 302 -9 2387 86 3 10 chr15 17863222 17863525 -67832229 - AluSc SINE Alu -7 302 2 1710 189 3 10 chr15 17863529 17863825 -67831929 - AluJo SINE Alu -18 294 1 2185 125 3 0 chr15 17863997 17864308 -67831446 - AluSx SINE Alu 0 312 1 630 222 0 17 chr15 17864324 17864441 -67831313 - FLAM_A SINE Alu -18 115 1 1396 196 59 28 chr15 17864563 17864849 -67830905 - AluJo SINE Alu -7 295 1 1178 147 0 11 chr15 17864908 17865085 -67830669 - AluSg/x SINE Alu -3 307 133 1965 124 10 51 chr15 17865086 17865400 -67830354 - AluSx SINE Alu -11 301 1 10251 27 5 188 chr15 17866103 17867834 -67827920 + SVA Other Other 5 1386 0 703 167 24 24 chr15 17868001 17868127 -67827627 + AluJb SINE Alu 2 127 -185 1216 184 24 0 chr15 17868244 17868456 -67827298 - AluJo SINE Alu -11 301 85 2495 74 0 0 chr15 17868501 17868800 -67826954 + AluSq SINE Alu 3 301 -12 1006 105 45 0 chr15 17869058 17869191 -67826563 + AluSq/x SINE Alu 4 142 -171 547 73 0 0 chr15 17869191 17869259 -67826495 - Tigger1 DNA MER2_type -866 1552 1485 4934 103 186 52 chr15 17869264 17869361 -67826393 - Tigger1 DNA MER2_type -1273 1145 1062 1580 191 0 0 chr15 17869361 17869617 -67826137 - AluJo SINE Alu -56 256 1 4934 103 186 52 chr15 17869617 17869832 -67825922 - Tigger1 DNA MER2_type -1356 1062 877 1909 133 13 29 chr15 17869832 17870141 -67825613 - AluJb SINE Alu -8 304 1 4934 103 186 52 chr15 17870141 17870332 -67825422 - Tigger1 DNA MER2_type -1541 877 713 2134 118 10 3 chr15 17870332 17870636 -67825118 - AluSq SINE Alu -7 306 1 4934 103 186 52 chr15 17870636 17870976 -67824778 - Tigger1 DNA MER2_type -1705 713 420 2230 86 23 7 chr15 17870976 17871279 -67824475 + AluY SINE Alu 1 308 -3 4934 103 186 52 chr15 17871279 17871394 -67824360 - Tigger1 DNA MER2_type -1998 420 55 2237 114 3 0 chr15 17871415 17871714 -67824040 + AluSx SINE Alu 1 300 -12 2021 158 0 0 chr15 17871726 17872030 -67823724 + AluSx SINE Alu 1 304 -8 1987 122 13 13 chr15 17872269 17872572 -67823182 - AluSp SINE Alu -10 303 1 245 230 128 47 chr15 17872890 17873038 -67822716 + L1MC5 LINE L1 7755 7914 -47 2276 99 3 7 chr15 17873276 17873580 -67822174 + AluSc SINE Alu 1 303 -6 1400 179 120 7 chr15 17873594 17873868 -67821886 + AluSx SINE Alu 1 305 -7 290 246 0 0 chr15 17873871 17873940 -67821814 + L1MC5 LINE L1 7709 7777 -184 858 126 0 0 chr15 17873956 17874075 -67821679 - FLAM_C SINE Alu -12 131 13 397 232 0 0 chr15 17874098 17874180 -67821574 + L1MC5 LINE L1 7807 7888 -73 825 86 17 0 chr15 17874672 17874789 -67820965 + AluSg/x SINE Alu 189 307 -2 2230 113 0 0 chr15 17875011 17875311 -67820443 - AluSg SINE Alu -10 300 1 1128 169 56 44 chr15 17875342 17875401 -67820353 - MER33 DNA MER1_type -2262 323 266 2137 119 7 0 chr15 17875401 17875694 -67820060 - AluSg1 SINE Alu -14 295 1 1128 169 56 44 chr15 17875694 17875794 -67819960 - MER33 DNA MER1_type -2319 266 169 2185 89 3 33 chr15 17875794 17876097 -67819657 - AluSp SINE Alu -19 294 1 2451 55 24 0 chr15 17876107 17876400 -67819354 - AluY SINE Alu -11 300 1 1128 169 56 44 chr15 17876400 17876547 -67819207 - MER33 DNA MER1_type -2424 161 1 640 152 0 0 chr15 17877045 17877137 -67818617 + AluSg/x SINE Alu 87 178 -134 219 376 144 24 chr15 17877161 17877450 -67818304 - L2 LINE L2 -2425 889 562 2218 85 20 0 chr15 17877450 17877743 -67818011 + AluSp SINE Alu 9 307 -6 1696 158 7 0 chr15 17877919 17878198 -67817556 + AluJb SINE Alu 20 300 -12 685 186 0 0 chr15 17878240 17878353 -67817401 - AluSg/x SINE Alu -11 301 189 1404 113 9 35 chr15 17878453 17878682 -67817072 + AluSp SINE Alu 88 310 -3 1844 139 14 0 chr15 17879180 17879468 -67816286 + AluSg SINE Alu 1 292 -18 719 159 0 0 chr15 17880146 17880253 -67815501 + AluSg/x SINE Alu 193 299 -10 1129 266 200 68 chr15 17880406 17880584 -67815170 + L2 LINE L2 1276 1429 -1885 1673 136 7 45 chr15 17880584 17880893 -67814861 - AluJb SINE Alu 0 312 16 1129 266 200 68 chr15 17880893 17881510 -67814244 + L2 LINE L2 1429 2204 -1110 2142 115 0 6 chr15 17881510 17881824 -67813930 - AluSx SINE Alu 0 312 1 1129 266 200 68 chr15 17881824 17881916 -67813838 + L2 LINE L2 2204 2282 -1032 1978 86 4 0 chr15 17882022 17882278 -67813476 + AluSp SINE Alu 37 293 -20 23 33 0 0 chr15 17882278 17882308 -67813446 + AT_rich Low_complexity Low_complexity 1 30 0 683 183 15 15 chr15 17882314 17882445 -67813309 + FLAM_C SINE Alu 2 132 -1 682 208 0 0 chr15 17882944 17883069 -67812685 + FLAM_A SINE Alu 2 126 -7 42 20 0 0 chr15 17883084 17883133 -67812621 + AT_rich Low_complexity Low_complexity 1 49 0 2195 82 0 41 chr15 17883285 17883604 -67812150 - AluY SINE Alu -5 306 1 557 165 0 0 chr15 17883738 17883823 -67811931 - AluJ/FLAM SINE Alu -225 87 3 836 204 6 23 chr15 17884221 17884233 -67811521 - AluJb SINE Alu -7 305 294 1850 138 6 58 chr15 17884233 17884559 -67811195 - AluSx SINE Alu -3 309 1 836 204 6 23 chr15 17884559 17884718 -67811036 - AluJb SINE Alu -18 294 137 2011 116 3 3 chr15 17884876 17885169 -67810585 + AluSq SINE Alu 3 295 -18 2109 100 6 10 chr15 17885294 17885605 -67810149 + AluSg SINE Alu 1 310 0 904 212 0 12 chr15 17885679 17885844 -67809910 + FRAM SINE Alu 1 163 -3 2150 117 0 0 chr15 17885886 17886195 -67809559 + AluSx SINE Alu 1 309 -3 2200 92 0 10 chr15 17886473 17886778 -67808976 - AluSg SINE Alu -7 303 2 2283 84 7 7 chr15 17886781 17887090 -67808664 - AluSq SINE Alu -4 309 1 1411 181 50 7 chr15 17887093 17887374 -67808380 - AluJb SINE Alu -19 293 1 1997 119 3 3 chr15 17887379 17887674 -67808080 - AluSg SINE Alu -15 295 1 2288 79 0 13 chr15 17887767 17888072 -67807682 - AluY SINE Alu -10 301 1 189 0 0 0 chr15 17888276 17888297 -67807457 + (A)n Simple_repeat Simple_repeat 1 21 0 657 280 142 8 chr15 17888304 17888543 -67807211 - L2 LINE L2 -2054 1260 990 264 30 0 0 chr15 17888648 17888681 -67807073 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1874 108 3 21 chr15 17888681 17888967 -67806787 - AluSq SINE Alu -32 281 1 27 96 0 0 chr15 17888967 17889050 -67806704 + AT_rich Low_complexity Low_complexity 1 83 0 309 101 38 114 chr15 17889078 17889236 -67806518 + (TATAG)n Simple_repeat Simple_repeat 2 147 0 287 112 21 64 chr15 17889265 17889453 -67806301 + (TA)n Simple_repeat Simple_repeat 1 180 0 182 100 0 78 chr15 17889488 17889578 -67806176 + (TA)n Simple_repeat Simple_repeat 1 83 0 213 156 47 16 chr15 17889618 17889682 -67806072 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr15 17889686 17889707 -67806047 + AT_rich Low_complexity Low_complexity 1 21 0 511 229 60 27 chr15 17889890 17890073 -67805681 - L1MC5 LINE L1 -44 7917 7729 932 93 0 0 chr15 17890098 17890227 -67805527 + AluJb SINE Alu 1 129 -183 1697 65 5 0 chr15 17890528 17890742 -67805012 + AluSg SINE Alu 1 215 -95 1028 149 36 5 chr15 17890913 17891108 -67804646 + AluJo SINE Alu 87 287 -25 180 0 0 0 chr15 17892829 17892849 -67802905 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1657 87 97 67 chr15 17893159 17893457 -67802297 + AluSx SINE Alu 1 307 -5 2044 125 0 3 chr15 17894293 17894597 -67801157 + AluSx SINE Alu 1 303 -9 390 277 152 48 chr15 17894935 17895166 -67800588 + MIR SINE MIR 7 261 -1 696 71 0 10 chr15 17895469 17895568 -67800186 + AluY SINE Alu 211 308 -3 978 71 169 0 chr15 17895598 17895752 -67800002 - AluSp SINE Alu 0 313 134 1219 71 0 0 chr15 17895854 17896008 -67799746 + AluSg/x SINE Alu 154 307 -5 244 204 0 0 chr15 17896144 17896193 -67799561 + L2 LINE L2 3265 3313 0 211 237 53 66 chr15 17896436 17896512 -67799242 + MER5A DNA MER1_type 1 75 -114 2202 83 0 7 chr15 17896512 17896812 -67798942 + AluY SINE Alu 1 298 -13 464 195 0 0 chr15 17896832 17896909 -67798845 + FLAM_A SINE Alu 45 121 -21 1605 171 18 3 chr15 17897193 17897479 -67798275 + AluJb SINE Alu 7 296 -16 414 195 8 6 chr15 17897936 17898188 -67797566 + AluJb SINE Alu 1 301 -11 22 56 0 0 chr15 17898200 17898236 -67797518 + AT_rich Low_complexity Low_complexity 1 36 0 1768 146 14 7 chr15 17898236 17898531 -67797223 + AluJo SINE Alu 3 299 -13 1562 114 28 0 chr15 17898538 17898793 -67796961 + AluSp SINE Alu 1 262 -51 336 267 84 0 chr15 17898905 17899036 -67796718 + MER112 DNA MER1_type 30 171 -89 206 391 33 0 chr15 17899441 17899533 -67796221 + L2 LINE L2 3182 3276 -37 2063 106 0 3 chr15 17899554 17899869 -67795885 + AluSx SINE Alu 1 314 0 1869 112 14 0 chr15 17899939 17900216 -67795538 + AluSx SINE Alu 1 281 -31 2365 64 3 0 chr15 17900536 17900834 -67794920 + AluSg1 SINE Alu 1 299 -10 1483 118 36 5 chr15 17901337 17901595 -67794159 + AluSx SINE Alu 58 322 0 1571 183 3 20 chr15 17901595 17901901 -67793853 + AluJb SINE Alu 1 301 -11 808 488 8 8 chr15 17901959 17902205 -67793549 - AluSx SINE Alu -13 299 54 371 198 0 25 chr15 17902212 17902293 -67793461 - L1M4 LINE L1 -1067 5079 5001 1095 110 7 0 chr15 17902294 17902449 -67793305 - AluSg/x SINE Alu -23 287 132 1955 110 10 7 chr15 17902449 17902740 -67793014 - AluSg1 SINE Alu -17 292 1 2173 60 18 3 chr15 17902753 17903038 -67792716 - AluY SINE Alu -20 291 3 2264 80 0 13 chr15 17903040 17903340 -67792414 - AluY SINE Alu -11 300 5 906 219 0 17 chr15 17903347 17903525 -67792229 - FAM SINE Alu 0 175 1 375 167 77 0 chr15 17903526 17903604 -67792150 - L1M4 LINE L1 -1141 5005 4922 1413 131 6 125 chr15 17903646 17903782 -67791972 + AluJb SINE Alu 1 152 -160 1482 180 7 20 chr15 17903782 17904077 -67791677 + AluJo SINE Alu 1 291 -21 1413 131 6 125 chr15 17904077 17904291 -67791463 + AluJb SINE Alu 152 309 -3 6523 55 6 42 chr15 17904327 17905561 -67790193 - SVA Other Other -520 1386 432 2387 61 0 0 chr15 17905790 17906084 -67789670 + AluY SINE Alu 2 295 -16 2230 95 10 0 chr15 17906097 17906403 -67789351 + AluY SINE Alu 2 310 -1 23 86 0 0 chr15 17906477 17906535 -67789219 + AT_rich Low_complexity Low_complexity 1 58 0 1160 258 67 100 chr15 17906567 17906682 -67789072 - L2 LINE L2 -18 3295 3178 1639 141 65 21 chr15 17906682 17906972 -67788782 + AluSq SINE Alu 1 303 -10 1160 258 67 100 chr15 17906972 17907408 -67788346 - L2 LINE L2 -135 3178 2729 2070 132 0 3 chr15 17907408 17907718 -67788036 - AluSx SINE Alu -3 309 1 1160 258 67 100 chr15 17907718 17907760 -67787994 - L2 LINE L2 -584 2729 2687 2251 119 35 22 chr15 17907760 17908130 -67787624 + THE1C LTR MaLR 1 375 0 1160 258 67 100 chr15 17908130 17908445 -67787309 - L2 LINE L2 -626 2687 2434 2198 107 0 23 chr15 17908466 17908636 -67787118 - AluSx SINE Alu -9 303 131 2122 54 50 24 chr15 17908636 17908934 -67786820 - AluY SINE Alu -5 306 1 2130 71 32 0 chr15 17908934 17909215 -67786539 - AluSc SINE Alu -19 290 1 2198 107 0 23 chr15 17909215 17909353 -67786401 - AluSx SINE Alu -179 133 1 2309 68 3 19 chr15 17909364 17909672 -67786082 - AluSp SINE Alu -4 309 7 490 78 0 65 chr15 17909966 17910043 -67785711 - Alu SINE Alu -7 302 231 860 94 0 0 chr15 17910043 17910160 -67785594 - AluSq/x SINE Alu -195 117 1 1064 173 6 0 chr15 17911726 17911922 -67783832 - AluJb SINE Alu 0 306 110 430 73 0 0 chr15 17911942 17911997 -67783757 + AluSc SINE Alu 29 83 -226 2400 59 0 0 chr15 17911999 17912302 -67783452 + AluY SINE Alu 1 303 -8 1618 112 4 0 chr15 17912302 17912535 -67783219 + AluSg/x SINE Alu 77 310 0 469 219 29 0 chr15 17912548 17912653 -67783101 - FLAM_C SINE Alu -34 109 2 818 138 0 128 chr15 17912654 17912691 -67783063 - AluJo/FRAM SINE Alu -7 305 265 1951 108 38 0 chr15 17912691 17912978 -67782776 + AluSq SINE Alu 1 298 -15 818 138 0 128 chr15 17912978 17913143 -67782611 - AluJo/FRAM SINE Alu -47 265 129 2099 117 0 3 chr15 17913155 17913462 -67782292 + AluSq SINE Alu 1 306 -7 1952 128 0 10 chr15 17913466 17913601 -67782153 + AluSq SINE Alu 1 136 -177 1852 114 28 3 chr15 17913601 17913890 -67781864 + AluSx SINE Alu 1 296 -16 1952 128 0 10 chr15 17913890 17914051 -67781703 + AluSq SINE Alu 136 294 -19 2681 10 0 7 chr15 17914055 17914364 -67781390 + AluYa5 SINE Alu 1 307 -4 279 135 0 0 chr15 17914364 17914401 -67781353 + AluSq SINE Alu 126 162 -141 1001 146 0 0 chr15 17914403 17914568 -67781186 + AluSg/x SINE Alu 144 308 -4 1915 103 18 0 chr15 17914574 17914846 -67780908 + AluSp SINE Alu 1 277 -36 978 106 0 0 chr15 17914950 17915082 -67780672 - AluY SINE Alu -179 132 1 181 347 71 0 chr15 17915109 17915207 -67780547 - MIR SINE MIR -59 203 99 1841 101 44 40 chr15 17915218 17915514 -67780240 - AluSx SINE Alu -15 297 1 1186 98 0 0 chr15 17915514 17915678 -67780076 - AluSg/x SINE Alu -9 301 138 2218 79 31 0 chr15 17915681 17915972 -67779782 - AluSx SINE Alu -12 300 1 618 213 147 0 chr15 17916385 17916535 -67779219 - MIR SINE MIR -25 237 66 2436 63 0 0 chr15 17916975 17917276 -67778478 - AluSg SINE Alu -9 301 1 2113 82 32 0 chr15 17917536 17917818 -67777936 - AluSg SINE Alu -19 291 1 180 77 0 0 chr15 17918190 17918216 -67777538 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 2187 106 0 0 chr15 17918557 17918850 -67776904 + AluSx SINE Alu 1 293 -19 2385 69 10 3 chr15 17918905 17919210 -67776544 + AluSg SINE Alu 1 307 -3 2287 81 3 0 chr15 17920490 17920786 -67774968 - AluSg SINE Alu -13 297 1 1945 127 0 119 chr15 17921062 17921146 -67774608 + MER7A DNA MER2_type 1 93 -2945 1279 129 32 5 chr15 17921146 17921356 -67774398 + L1PA13 LINE L1 5939 6157 -6 2339 76 0 16 chr15 17921356 17921670 -67774084 - AluY SINE Alu -2 309 1 1945 127 0 119 chr15 17921676 17921739 -67774015 + MER7A DNA MER2_type 93 162 -2876 1444 167 3 54 chr15 17921739 17921909 -67773845 - AluJo SINE Alu -11 301 153 2230 90 7 0 chr15 17921909 17922209 -67773545 - AluSq SINE Alu -11 302 1 1444 167 3 54 chr15 17922209 17922355 -67773399 - AluJo SINE Alu -159 153 1 1945 127 0 119 chr15 17922355 17922584 -67773170 + MER7A DNA MER2_type 162 331 -15 387 267 118 33 chr15 17922634 17922942 -67772812 + MLT1J LTR MaLR 154 582 -33 1759 152 0 10 chr15 17923459 17923761 -67771993 - AluSx SINE Alu -13 299 1 831 204 0 7 chr15 17924053 17924205 -67771549 + FAM SINE Alu 1 151 -34 2051 125 10 0 chr15 17924336 17924639 -67771115 + AluSq SINE Alu 1 306 -7 2118 107 3 0 chr15 17924705 17925004 -67770750 + AluSg SINE Alu 3 302 -8 567 187 22 93 chr15 17925226 17925365 -67770389 + FLAM_A SINE Alu 2 130 -3 255 241 191 35 chr15 17925365 17925506 -67770248 - MIR3 SINE MIR -44 164 2 2312 87 0 0 chr15 17925532 17925832 -67769922 + AluSg SINE Alu 1 300 -10 967 164 12 0 chr15 17925848 17926013 -67769741 - AluSg/x SINE Alu -28 282 116 1330 129 5 0 chr15 17926252 17926461 -67769293 + AluSg/x SINE Alu 100 309 -1 493 261 43 27 chr15 17926465 17926653 -67769101 - L1M4 LINE L1 -2199 3947 3757 461 199 0 117 chr15 17926673 17926750 -67769004 - L1M4 LINE L1 -2374 3772 3688 2189 69 0 31 chr15 17926750 17927065 -67768689 - AluY SINE Alu 0 306 1 461 199 0 117 chr15 17927065 17927111 -67768643 - L1M4 LINE L1 -2458 3688 3671 1874 156 10 0 chr15 17927111 17927419 -67768335 + AluSx SINE Alu 1 311 -1 461 199 0 117 chr15 17927419 17927464 -67768290 - L1M4 LINE L1 -2475 3671 3622 243 222 0 0 chr15 17927469 17927532 -67768222 - L1MA10 LINE L1 -6 6328 6266 962 108 0 0 chr15 17927534 17927663 -67768091 + AluSq/x SINE Alu 1 129 -184 207 0 0 0 chr15 17927663 17927686 -67768068 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 343 203 152 0 chr15 17927687 17927766 -67767988 - L1MA10 LINE L1 -60 6274 6184 579 68 0 0 chr15 17927806 17927879 -67767875 + AluS SINE Alu 2 74 -238 2056 118 0 31 chr15 17928373 17928553 -67767201 - AluSq SINE Alu 0 313 146 2441 66 0 0 chr15 17928553 17928858 -67766896 - AluY SINE Alu -6 305 1 2056 118 0 31 chr15 17928858 17929000 -67766754 - AluSq SINE Alu -167 146 1 220 310 0 0 chr15 17929089 17929147 -67766607 + L2 LINE L2 3215 3272 0 244 342 82 58 chr15 17930154 17930397 -67765357 - L2 LINE L2 -92 3180 2932 1562 136 21 133 chr15 17930609 17930851 -67764903 - AluJo SINE Alu 0 302 34 2099 75 0 59 chr15 17930851 17931172 -67764582 - AluY SINE Alu -9 302 1 2153 90 10 3 chr15 17931176 17931465 -67764289 - AluSc SINE Alu -16 293 3 1562 136 21 133 chr15 17931465 17931555 -67764199 - AluJo SINE Alu -271 31 3 886 253 87 29 chr15 17931559 17931836 -67763918 + L2 LINE L2 3016 3308 -5 404 165 94 0 chr15 17931884 17931969 -67763785 - FRAM SINE Alu 0 166 74 988 122 32 0 chr15 17932085 17932241 -67763513 + AluSc SINE Alu 135 295 -14 216 100 0 25 chr15 17932284 17932324 -67763430 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 306 200 50 0 chr15 17932599 17932659 -67763095 + MIR SINE MIR 129 191 -71 1189 233 20 0 chr15 17933043 17933292 -67762462 + MIR SINE MIR 8 261 -1 374 287 46 0 chr15 17933299 17933386 -67762368 - L2 LINE L2 -19 3253 3163 1898 151 13 0 chr15 17933657 17933961 -67761793 + AluJb SINE Alu 1 308 -4 278 193 246 0 chr15 17934028 17934142 -67761612 - MLT1L LTR MaLR -52 563 422 1696 169 6 22 chr15 17934495 17934809 -67760945 - AluJb SINE Alu -3 309 1 2291 96 3 10 chr15 17935144 17935458 -67760296 + AluSx SINE Alu 1 312 0 2150 103 3 3 chr15 17935492 17935793 -67759961 + AluSq SINE Alu 1 301 -12 2097 105 3 0 chr15 17936065 17936376 -67759378 + AluSq SINE Alu 1 312 0 2456 143 22 33 chr15 17936653 17936783 -67758971 + L1MB3 LINE L1 5701 5831 -352 2171 112 0 0 chr15 17936783 17937079 -67758675 + AluSg SINE Alu 1 296 -14 2456 143 22 33 chr15 17937079 17937436 -67758318 + L1MB3 LINE L1 5831 6183 0 2158 128 0 0 chr15 17937443 17937748 -67758006 + AluSx SINE Alu 1 305 -7 1025 169 14 29 chr15 17937799 17938006 -67757748 + AluJb SINE Alu 87 290 -22 866 138 0 36 chr15 17938017 17938155 -67757599 + AluJo/FLAM SINE Alu 1 133 -169 2106 96 0 17 chr15 17938158 17938459 -67757295 + AluSg SINE Alu 1 296 -14 525 200 30 0 chr15 17938477 17938577 -67757177 - FLAM_A SINE Alu -19 123 21 1745 70 9 0 chr15 17938589 17938816 -67756938 - AluSq SINE Alu -84 229 1 229 354 97 9 chr15 17938817 17938930 -67756824 + L2 LINE L2 3191 3313 0 1454 186 13 43 chr15 17939255 17939556 -67756198 + AluJb SINE Alu 1 292 -20 268 268 108 57 chr15 17939596 17939790 -67755964 + MLT1J LTR MaLR 239 442 -69 2033 115 0 0 chr15 17939892 17940179 -67755575 + AluSq SINE Alu 12 298 -15 1677 150 11 18 chr15 17940179 17940499 -67755255 + AluSx SINE Alu 1 318 0 2288 75 0 0 chr15 17940549 17940841 -67754913 + AluY SINE Alu 1 292 -19 2105 84 10 29 chr15 17941966 17942274 -67753480 + AluSx SINE Alu 1 302 -10 2146 121 0 0 chr15 17942348 17942653 -67753101 + AluSq SINE Alu 3 307 -6 374 278 21 0 chr15 17942994 17943091 -67752663 - MIR SINE MIR -118 144 46 699 105 0 9 chr15 17943281 17943386 -67752368 - AluSc SINE Alu -14 295 192 1750 92 62 45 chr15 17943776 17944068 -67751686 + AluSx SINE Alu 1 297 -15 1971 105 7 3 chr15 17944068 17944380 -67751374 + AluSp SINE Alu 1 313 0 2306 70 3 0 chr15 17944663 17944963 -67750791 - AluSx SINE Alu -11 301 1 180 111 0 0 chr15 17945885 17945912 -67749842 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2229 96 0 0 chr15 17946788 17947089 -67748665 - AluSx SINE Alu -10 302 2 299 367 51 17 chr15 17947466 17947643 -67748111 - L3 LINE CR1 -12 1565 1383 182 356 27 27 chr15 17948141 17948214 -67747540 - L2 LINE L2 -12 3260 3188 1605 179 0 28 chr15 17948517 17948836 -67746918 - AluJo SINE Alu -2 310 1 586 228 72 24 chr15 17949208 17949375 -67746379 + MIR SINE MIR 85 259 -3 1761 133 23 26 chr15 17949816 17950124 -67745630 + AluJb SINE Alu 1 307 -5 1050 159 6 6 chr15 17950662 17950825 -67744929 - FRAM SINE Alu -3 163 1 1899 153 0 0 chr15 17950835 17951135 -67744619 - AluJb SINE Alu -3 309 10 319 235 49 86 chr15 17951252 17951414 -67744340 - L1MC4 LINE L1 -138 7904 7749 2051 121 0 0 chr15 17951415 17951712 -67744042 - AluSq SINE Alu -16 297 1 2197 109 0 3 chr15 17951715 17952028 -67743726 - AluSx SINE Alu 0 312 1 1937 98 79 0 chr15 17952460 17952737 -67743017 - AluSc SINE Alu -10 299 1 29 0 0 0 chr15 17952807 17952836 -67742918 + AT_rich Low_complexity Low_complexity 1 29 0 504 234 0 0 chr15 17952836 17952943 -67742811 - AluJb SINE Alu -205 107 1 21 0 0 0 chr15 17952987 17953008 -67742746 + AT_rich Low_complexity Low_complexity 1 21 0 2223 103 3 0 chr15 17953121 17953423 -67742331 + AluSp SINE Alu 1 303 -10 2057 116 0 0 chr15 17953507 17953800 -67741954 - AluSc SINE Alu -16 293 1 248 308 55 0 chr15 17954015 17954106 -67741648 - MIR SINE MIR -1 261 166 918 126 0 7 chr15 17955132 17955267 -67740487 + AluSg/x SINE Alu 145 278 -32 180 0 0 0 chr15 17955272 17955292 -67740462 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2279 103 3 0 chr15 17955311 17955622 -67740132 + AluSq SINE Alu 1 312 -1 770 109 0 0 chr15 17955708 17955809 -67739945 + AluS SINE Alu 2 102 -211 2116 95 7 0 chr15 17956399 17956693 -67739061 + AluSg SINE Alu 1 296 -14 1062 190 68 0 chr15 17956988 17957193 -67738561 + MER20 DNA MER1_type 1 219 0 1751 168 71 69 chr15 17957484 17957658 -67738096 - L1MB7 LINE L1 -135 6049 5877 1955 99 0 64 chr15 17957658 17957971 -67737783 + AluSx SINE Alu 1 293 -19 1751 168 71 69 chr15 17957971 17958230 -67737524 - L1MB7 LINE L1 -307 5877 5615 1445 207 6 9 chr15 17958226 17958545 -67737209 - L1MB7 LINE L1 -935 5211 4894 * 2130 99 6 22 chr15 17958783 17959097 -67736657 - AluSq SINE Alu -4 309 1 312 182 65 0 chr15 17959112 17959189 -67736565 - FLAM_A SINE Alu 0 133 52 1304 98 88 0 chr15 17959189 17959383 -67736371 + AluY SINE Alu 87 297 -14 778 128 40 0 chr15 17959385 17959510 -67736244 + FLAM_C SINE Alu 3 132 -1 1789 157 3 13 chr15 17959563 17959863 -67735891 + AluSx SINE Alu 1 297 -15 1257 81 0 0 chr15 17960005 17960212 -67735542 + AluY SINE Alu 121 327 0 284 324 0 0 chr15 17960278 17960346 -67735408 - L2 LINE L2 -2 3311 3244 986 199 0 0 chr15 17960346 17960527 -67735227 - AluJb SINE Alu -12 300 120 774 199 0 0 chr15 17960621 17960762 -67734992 - FLAM_C SINE Alu -1 142 2 848 129 0 8 chr15 17960828 17960960 -67734794 + AluJb SINE Alu 1 131 -181 1471 161 97 4 chr15 17961372 17961651 -67734103 - AluJb SINE Alu -7 305 1 2394 84 0 0 chr15 17961660 17961969 -67733785 - AluY SINE Alu -2 309 1 21 0 0 0 chr15 17962026 17962047 -67733707 + AT_rich Low_complexity Low_complexity 1 21 0 1025 67 7 0 chr15 17962325 17962460 -67733294 - AluSg SINE Alu -170 140 5 1593 176 0 18 chr15 17962467 17962746 -67733008 - AluJo SINE Alu -21 291 18 2006 124 0 19 chr15 17962849 17963156 -67732598 + AluSx SINE Alu 1 301 -11 234 289 106 14 chr15 17963564 17963706 -67732048 + HAL1 LINE L1 1283 1437 -1070 2074 115 3 16 chr15 17963715 17964027 -67731727 - AluSc SINE Alu -1 308 1 781 167 88 49 chr15 17964050 17964254 -67731500 - L1ME3A LINE L1 -10 6160 5949 2128 156 15 9 chr15 17964358 17964691 -67731063 + MER1B DNA MER1_type 3 337 0 315 59 0 39 chr15 17964702 17964753 -67731001 - FLAM_A SINE Alu 0 133 85 1181 141 22 0 chr15 17964753 17964937 -67730817 - AluSp SINE Alu -125 188 1 2165 88 17 0 chr15 17965066 17965362 -67730392 - AluSg1 SINE Alu -8 301 1 2481 68 0 0 chr15 17965823 17966132 -67729622 - AluSc SINE Alu 0 309 1 2135 82 4 0 chr15 17966320 17966650 -67729104 - AluY SINE Alu 0 331 1 1613 179 3 28 chr15 17966671 17966989 -67728765 - AluJo SINE Alu -2 310 1 787 205 104 69 chr15 17967824 17968216 -67727538 - L1MC4 LINE L1 -10 7985 7533 238 87 152 0 chr15 17968366 17968412 -67727342 + AluSp/q SINE Alu 251 303 0 2034 102 0 17 chr15 17968453 17968748 -67727006 + AluSx SINE Alu 1 290 -22 548 265 143 16 chr15 17968782 17968971 -67726783 + MIR SINE MIR 20 232 -30 359 189 2 116 chr15 17969961 17970097 -67725657 - L1MC4 LINE L1 -1 8040 7889 573 122 128 13 chr15 17970119 17970275 -67725479 - Charlie5 DNA MER1_type -36 2576 2403 977 101 7 7 chr15 17970277 17970426 -67725328 - AluSg/x SINE Alu -6 306 158 446 213 70 48 chr15 17970568 17970776 -67724978 - L1MC4 LINE L1 -248 7560 7426 21 0 0 0 chr15 17971684 17971705 -67724049 + AT_rich Low_complexity Low_complexity 1 21 0 1794 112 84 3 chr15 17971997 17972283 -67723471 - AluSx SINE Alu -3 309 1 2117 117 3 0 chr15 17972648 17972947 -67722807 - AluSx SINE Alu -12 300 1 338 280 180 11 chr15 17972967 17973156 -67722598 + L1ME4a LINE L1 5743 5963 -158 792 179 7 14 chr15 17973156 17973301 -67722453 - AluSg/x SINE Alu -32 280 137 240 35 0 0 chr15 17973301 17973330 -67722424 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 310 97 0 48 chr15 17973340 17973402 -67722352 + (TTTCC)n Simple_repeat Simple_repeat 1 59 0 1622 122 12 8 chr15 17973403 17973658 -67722096 - AluSx SINE Alu -6 306 51 2015 104 0 0 chr15 17973758 17974028 -67721726 - AluSg SINE Alu -40 270 1 2526 49 0 0 chr15 17974034 17974339 -67721415 - AluY SINE Alu -6 305 1 349 197 0 0 chr15 17974339 17974400 -67721354 + AluY SINE Alu 114 174 -127 908 162 14 0 chr15 17974421 17974569 -67721185 + AluJb SINE Alu 136 285 -27 237 125 50 0 chr15 17974604 17974644 -67721110 + L2 LINE L2 3266 3307 -6 2211 97 0 3 chr15 17974677 17974975 -67720779 - AluSq SINE Alu -16 297 1 235 160 0 40 chr15 17974984 17975034 -67720720 - Alu SINE Alu 0 133 86 2417 81 0 3 chr15 17975146 17975456 -67720298 - AluY SINE Alu -2 309 1 1550 140 3 101 chr15 17975465 17975628 -67720126 - AluJo SINE Alu -16 296 179 1887 138 10 7 chr15 17975628 17975925 -67719829 - AluSx SINE Alu -14 298 1 1550 140 3 101 chr15 17975925 17976089 -67719665 - AluJo SINE Alu -133 179 1 337 299 64 35 chr15 17976400 17976670 -67719084 + L1MC4 LINE L1 7720 8002 -40 2191 105 3 3 chr15 17976670 17976974 -67718780 - AluSp SINE Alu -9 304 1 337 299 64 35 chr15 17976974 17977017 -67718737 + L1MC4 LINE L1 8002 8042 0 1894 139 30 0 chr15 17977035 17977336 -67718418 - AluSq SINE Alu -3 310 1 665 310 205 15 chr15 17977337 17977795 -67717959 + L2 LINE L2 2772 3313 0 2042 113 0 10 chr15 17978334 17978627 -67717127 - AluSg SINE Alu -20 290 1 366 317 103 34 chr15 17979002 17979264 -67716490 + L2 LINE L2 2682 2961 -353 2132 97 3 3 chr15 17979820 17980118 -67715636 + AluSx SINE Alu 1 298 -14 234 284 39 39 chr15 17980308 17980410 -67715344 + MIR3 SINE MIR 14 115 -93 2258 100 0 0 chr15 17980566 17980867 -67714887 - AluSx SINE Alu -11 301 1 2120 82 3 36 chr15 17980886 17981190 -67714564 - AluSq SINE Alu -19 294 1 598 223 0 0 chr15 17981205 17981326 -67714428 - FLAM_A SINE Alu -10 123 3 266 239 15 0 chr15 17981334 17981401 -67714353 - MIR SINE MIR -73 189 122 459 137 0 0 chr15 17981826 17981899 -67713855 - AluJ/FRAM SINE Alu -7 305 233 2035 125 3 3 chr15 17981899 17982204 -67713550 - AluSg1 SINE Alu -4 305 1 1918 112 14 0 chr15 17982207 17982512 -67713242 - AluSc SINE Alu 0 309 1 982 103 0 0 chr15 17982512 17982648 -67713106 - AluSq/x SINE Alu -176 136 1 401 301 131 56 chr15 17982710 17983069 -67712685 + L2 LINE L2 2329 2714 -600 2182 94 0 7 chr15 17983069 17983376 -67712378 + AluSq SINE Alu 1 305 -8 970 58 79 0 chr15 17983376 17983554 -67712200 + AluSq SINE Alu 134 322 0 910 99 8 0 chr15 17983567 17983698 -67712056 + FLAM_C SINE Alu 1 132 -11 293 315 135 37 chr15 17983702 17983997 -67711757 + L2 LINE L2 2705 3029 -243 227 226 12 48 chr15 17984318 17984402 -67711352 + (CGGGG)n Simple_repeat Simple_repeat 4 84 0 189 107 0 0 chr15 17984432 17984460 -67711294 + (CGG)n Simple_repeat Simple_repeat 3 30 0 257 312 0 54 chr15 17985551 17985644 -67710110 + MIR3 SINE MIR 8 95 -113 996 41 57 0 chr15 17985825 17985948 -67709806 + AluSp SINE Alu 1 130 -183 2099 89 16 20 chr15 17986811 17987114 -67708640 - AluY SINE Alu -9 302 1 965 171 0 17 chr15 17987202 17987220 -67708534 - AluSg/x SINE Alu -1 311 294 2074 100 3 7 chr15 17987220 17987521 -67708233 - AluSc SINE Alu -9 300 1 965 171 0 17 chr15 17987521 17987683 -67708071 - AluSg/x SINE Alu -18 294 134 2017 118 0 38 chr15 17987683 17987852 -67707902 - AluSx SINE Alu -9 303 150 2116 88 10 29 chr15 17987852 17988158 -67707596 - AluY SINE Alu -11 300 1 2017 118 0 38 chr15 17988158 17988303 -67707451 - AluSx SINE Alu -162 150 1 347 165 122 139 chr15 17988303 17988418 -67707336 - MIR SINE MIR -133 129 17 421 185 0 0 chr15 17988855 17988920 -67706834 + AluJ/FLAM SINE Alu 3 67 -245 21 0 0 0 chr15 17988974 17988995 -67706759 + AT_rich Low_complexity Low_complexity 1 21 0 936 64 0 8 chr15 17989240 17989365 -67706389 + AluSg/x SINE Alu 175 298 -14 2259 86 0 3 chr15 17989401 17989703 -67706051 + AluSg SINE Alu 1 301 -9 1084 188 125 22 chr15 17989763 17990035 -67705719 - L1ME1 LINE L1 -118 6048 5749 855 206 44 29 chr15 17990145 17990349 -67705405 - AluJb SINE Alu -21 291 85 2087 99 0 3 chr15 17990371 17990706 -67705048 + AluSc SINE Alu 1 334 0 2063 119 3 0 chr15 17990715 17991009 -67704745 + AluSx SINE Alu 1 295 -17 2322 82 3 0 chr15 17991358 17991663 -67704091 + AluY SINE Alu 1 306 -5 1391 215 7 7 chr15 17991665 17991972 -67703782 + AluJo SINE Alu 1 307 -5 1400 104 5 0 chr15 17992010 17992202 -67703552 - AluSq SINE Alu -120 193 1 828 144 0 0 chr15 17992226 17992344 -67703410 - FLAM_C SINE Alu -15 118 1 1900 112 25 0 chr15 17992451 17992757 -67702997 - AluSq SINE Alu 0 313 1 254 310 77 52 chr15 17993146 17993301 -67702453 + L2 LINE L2 3151 3309 -4 2124 135 0 0 chr15 17993579 17993891 -67701863 - AluSq SINE Alu -1 312 1 3728 96 40 42 chr15 17993929 17994525 -67701229 - LTR61 LTR ERV1 0 595 1 1529 193 91 36 chr15 17995021 17995328 -67700426 - MLT1C LTR MaLR -3 464 124 1541 203 10 3 chr15 17995328 17995623 -67700131 + AluJb SINE Alu 1 297 -15 1529 193 91 36 chr15 17995623 17995755 -67699999 - MLT1C LTR MaLR -343 124 1 2247 87 0 3 chr15 17995768 17996066 -67699688 - AluSg SINE Alu -13 297 1 36 23 0 0 chr15 17996103 17996146 -67699608 + AT_rich Low_complexity Low_complexity 1 43 0 277 183 16 35 chr15 17996333 17996401 -67699353 - MER5A DNA MER1_type -87 102 26 1510 131 123 8 chr15 17996402 17996681 -67699073 - AluSg1 SINE Alu 0 308 1 1186 221 55 18 chr15 17996683 17996971 -67698783 - L1MC4 LINE L1 -476 7566 7263 1833 146 30 0 chr15 17996971 17997266 -67698488 - AluSx SINE Alu -8 304 1 1186 221 55 18 chr15 17997266 17997307 -67698447 - L1MC4 LINE L1 -779 7263 7225 204 306 49 54 chr15 17997598 17997799 -67697955 + L2 LINE L2 2796 2997 -275 673 200 9 0 chr15 17997919 17998034 -67697720 + FLAM_A SINE Alu 1 116 -17 2005 117 14 0 chr15 17998049 17998339 -67697415 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr15 17998495 17998515 -67697239 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr15 17998516 17998542 -67697212 + AT_rich Low_complexity Low_complexity 1 26 0 2275 68 0 7 chr15 17998561 17998856 -67696898 + AluY SINE Alu 1 293 -18 809 127 0 0 chr15 17998856 17998974 -67696780 - AluJo/FLAM SINE Alu -194 118 1 2207 96 0 0 chr15 17998986 17999288 -67696466 - AluSc SINE Alu 0 309 8 2284 86 0 6 chr15 17999489 17999802 -67695952 - AluY SINE Alu 0 311 1 265 305 79 89 chr15 18000029 18000171 -67695583 + MIR SINE MIR 12 153 -109 2025 124 0 3 chr15 18000171 18000477 -67695277 - AluSc SINE Alu -4 305 1 265 305 79 89 chr15 18000477 18000524 -67695230 + MIR SINE MIR 153 199 -63 319 200 211 11 chr15 18000815 18000910 -67694844 + MER58 DNA MER1_type 3 116 -99 1147 135 6 0 chr15 18000911 18001089 -67694665 + AluSq SINE Alu 1 179 -134 1406 103 0 5 chr15 18001190 18001384 -67694370 - AluSp SINE Alu -120 193 1 226 245 19 0 chr15 18001384 18001437 -67694317 + MER58 DNA MER1_type 2367 2420 0 1948 116 14 3 chr15 18002094 18002387 -67693367 + AluSx SINE Alu 1 296 -16 783 143 0 16 chr15 18002773 18002899 -67692855 - AluJo SINE Alu -178 134 11 2031 115 20 3 chr15 18003258 18003562 -67692192 - AluSq SINE Alu 0 313 5 1063 163 0 0 chr15 18003603 18003781 -67691973 - AluSg/x SINE Alu -17 295 118 349 191 0 0 chr15 18003781 18003844 -67691910 - AluS SINE Alu -5 295 233 1338 71 60 0 chr15 18003949 18004132 -67691622 - AluSc SINE Alu -24 285 92 884 112 51 84 chr15 18004422 18004477 -67691277 - L1MA5A LINE L1 -5 6292 6237 2287 90 0 6 chr15 18004477 18004788 -67690966 - AluSc SINE Alu 0 309 1 884 112 51 84 chr15 18004788 18004910 -67690844 - L1MA5A LINE L1 -60 6237 6121 642 187 19 0 chr15 18004928 18005035 -67690719 - FLAM_C SINE Alu -30 113 5 2103 102 30 0 chr15 18005047 18005350 -67690404 - AluSx SINE Alu 0 312 1 3704 212 101 32 chr15 18005360 18006710 -67689044 - L1M2c LINE L1 -4937 1852 92 755 161 8 0 chr15 18006717 18006835 -67688919 + FLAM_A SINE Alu 8 126 -16 574 120 87 0 chr15 18006841 18006933 -67688821 - L1M2c LINE L1 -6687 102 3 814 139 0 19 chr15 18007063 18007221 -67688533 + AluYa5 SINE Alu 127 281 -30 1238 184 0 14 chr15 18007245 18007309 -67688445 + AluSg/x SINE Alu 72 135 -177 2255 95 3 0 chr15 18007309 18007613 -67688141 + AluSx SINE Alu 1 305 -7 1238 184 0 14 chr15 18007613 18007771 -67687983 + AluSg/x SINE Alu 135 291 -21 350 148 40 50 chr15 18007773 18007874 -67687880 - MER104 DNA Tc2 -78 102 3 237 65 0 0 chr15 18008028 18008059 -67687695 + (GGA)n Simple_repeat Simple_repeat 1 31 0 2239 95 10 0 chr15 18008602 18008908 -67686846 - AluSq SINE Alu -4 309 1 518 296 228 16 chr15 18009193 18009504 -67686250 - L1ME1 LINE L1 -306 5860 5484 544 195 130 52 chr15 18009751 18009905 -67685849 - MLT1A1 LTR MaLR -198 167 2 1943 117 10 0 chr15 18009905 18010195 -67685559 - AluSc SINE Alu -16 293 1 1251 122 0 20 chr15 18010200 18010379 -67685375 - AluSg/x SINE Alu 0 312 136 1908 121 10 36 chr15 18010379 18010545 -67685209 - AluSc SINE Alu -10 299 143 2251 84 7 0 chr15 18010545 18010841 -67684913 - AluSp SINE Alu -10 303 6 1908 121 10 36 chr15 18010841 18010981 -67684773 - AluSc SINE Alu -166 143 1 1251 122 0 20 chr15 18010981 18010998 -67684756 - AluSg/x SINE Alu -176 136 120 1308 115 0 0 chr15 18011269 18011461 -67684293 + AluSq SINE Alu 116 307 -6 2021 89 3 17 chr15 18011483 18011774 -67683980 + AluSx SINE Alu 1 287 -25 2182 80 0 23 chr15 18011776 18012075 -67683679 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 18012075 18012107 -67683647 + AT_rich Low_complexity Low_complexity 1 32 0 1740 163 0 20 chr15 18012163 18012464 -67683290 + AluSx SINE Alu 1 295 -17 2391 54 0 0 chr15 18012788 18013082 -67682672 + AluY SINE Alu 1 294 -17 2208 50 50 0 chr15 18013093 18013374 -67682380 + AluY SINE Alu 1 295 -16 267 330 25 25 chr15 18013407 18013525 -67682229 - MER5B DNA MER1_type -60 118 1 392 83 0 0 chr15 18014018 18014066 -67681688 - FLAM SINE Alu -12 121 74 477 233 21 41 chr15 18014475 18014630 -67681124 + L1ME LINE L1 5514 5662 -504 461 216 39 0 chr15 18014636 18014738 -67681016 + L1 LINE L1 4218 4323 -1823 2125 108 0 0 chr15 18014739 18015034 -67680720 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr15 18015040 18015069 -67680685 + GC_rich Low_complexity Low_complexity 1 29 0 2650 88 31 90 chr15 18015120 18015811 -67679943 + SVA Other Other 393 868 -555 2320 81 0 0 chr15 18015957 18016255 -67679499 + AluSx SINE Alu 1 298 -14 2200 97 3 10 chr15 18016399 18016710 -67679044 - AluY SINE Alu 0 311 3 2010 143 0 3 chr15 18017022 18017330 -67678424 - AluSx SINE Alu -5 307 1 22 56 0 0 chr15 18017448 18017484 -67678270 + AT_rich Low_complexity Low_complexity 1 36 0 2260 91 7 0 chr15 18017559 18017867 -67677887 - AluSx SINE Alu -2 310 1 2122 104 3 3 chr15 18017869 18018166 -67677588 - AluSc SINE Alu -12 297 1 2414 70 0 0 chr15 18018347 18018649 -67677105 - AluY SINE Alu -9 302 1 2146 94 0 0 chr15 18019549 18019835 -67675919 - AluY SINE Alu -15 296 11 1893 151 0 0 chr15 18019982 18020280 -67675474 + AluSx SINE Alu 1 298 -14 807 163 7 0 chr15 18020996 18021131 -67674623 + AluJ SINE Alu 1 136 -176 2429 64 0 10 chr15 18021163 18021477 -67674277 + AluY SINE Alu 1 311 0 1046 188 0 0 chr15 18021488 18021664 -67674090 + AluJ SINE Alu 124 299 -13 2107 95 3 3 chr15 18021675 18021970 -67673784 - AluSx SINE Alu -17 295 1 2319 70 0 13 chr15 18022297 18022611 -67673143 - AluY SINE Alu -1 310 1 1854 150 0 16 chr15 18023111 18023417 -67672337 - AluSx SINE Alu -11 301 1 183 277 181 24 chr15 18023572 18023655 -67672099 - MIR3 SINE MIR -5 203 108 1992 92 43 0 chr15 18023665 18023946 -67671808 + AluY SINE Alu 1 293 -18 265 186 29 71 chr15 18024032 18024102 -67671652 - MIR SINE MIR -72 190 124 2121 120 0 0 chr15 18024184 18024483 -67671271 - AluSx SINE Alu -13 299 1 26 0 0 0 chr15 18025729 18025755 -67669999 + AT_rich Low_complexity Low_complexity 1 26 0 706 151 0 0 chr15 18025766 18025872 -67669882 + AluSx SINE Alu 2 107 -205 1264 108 0 0 chr15 18025922 18026098 -67669656 + AluSx SINE Alu 106 281 -31 216 0 0 0 chr15 18026101 18026125 -67669629 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 694 101 40 0 chr15 18026125 18026224 -67669530 - U6 snRNA snRNA -3 104 2 55 0 0 15 chr15 18026227 18026272 -67669482 + AT_rich Low_complexity Low_complexity 1 46 -19 1797 151 3 0 chr15 18026272 18026564 -67669190 - AluJb SINE Alu -19 293 1 55 0 0 15 chr15 18026564 18026584 -67669170 + AT_rich Low_complexity Low_complexity 46 65 0 2012 56 0 4 chr15 18026608 18026860 -67668894 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 18026875 18026900 -67668854 + AT_rich Low_complexity Low_complexity 1 25 0 749 169 0 0 chr15 18026907 18027025 -67668729 - FLAM_C SINE Alu -15 118 1 685 204 8 0 chr15 18027072 18027204 -67668550 + FLAM_A SINE Alu 6 138 -4 42 20 0 0 chr15 18027246 18027295 -67668459 + AT_rich Low_complexity Low_complexity 1 49 0 1758 185 3 0 chr15 18027297 18027605 -67668149 + AluJo SINE Alu 1 309 -3 2077 86 3 51 chr15 18027670 18027984 -67667770 + AluSx SINE Alu 1 299 -13 1787 159 3 10 chr15 18028050 18028358 -67667396 + AluJo SINE Alu 1 306 -6 841 167 0 0 chr15 18029301 18029433 -67666321 + FLAM_A SINE Alu 1 132 -1 1831 153 0 3 chr15 18029538 18029832 -67665922 + AluJb SINE Alu 1 293 -19 2058 155 0 0 chr15 18029837 18030128 -67665626 + AluJo SINE Alu 2 292 -20 1937 161 19 19 chr15 18030828 18031139 -67664615 + AluJo SINE Alu 1 311 -1 31 26 0 0 chr15 18031206 18031244 -67664510 + AT_rich Low_complexity Low_complexity 1 38 0 2102 117 26 13 chr15 18031466 18031775 -67663979 - AluSq SINE Alu 0 313 1 1399 211 66 18 chr15 18031781 18032189 -67663565 + L1MC4 LINE L1 7107 7538 -504 478 199 122 32 chr15 18032190 18032346 -67663408 - MER3 DNA MER1_type -80 129 7 1963 102 47 66 chr15 18032382 18032418 -67663336 + L1PB2 LINE L1 5755 5790 -361 2290 104 3 0 chr15 18032418 18032717 -67663037 + AluSg SINE Alu 1 300 -10 1963 102 47 66 chr15 18032717 18032907 -67662847 + L1PB2 LINE L1 5790 5974 -177 1746 140 103 0 chr15 18032907 18033179 -67662575 + AluSx SINE Alu 1 300 -12 1963 102 47 66 chr15 18033179 18033315 -67662439 + L1PB2 LINE L1 5974 6111 -40 1873 120 84 0 chr15 18033315 18033589 -67662165 + AluSq SINE Alu 1 297 -16 2358 92 0 10 chr15 18033589 18033892 -67661862 + AluY SINE Alu 1 300 -11 2052 125 28 0 chr15 18033900 18034187 -67661567 + AluSq SINE Alu 1 295 -18 2218 110 3 7 chr15 18034189 18034490 -67661264 + AluSc SINE Alu 1 300 -9 831 116 0 88 chr15 18034495 18034642 -67661112 + FLAM_C SINE Alu 1 134 -9 2128 108 37 0 chr15 18034644 18034940 -67660814 + AluSq SINE Alu 6 312 -1 297 274 94 8 chr15 18035478 18035595 -67660159 - MIR SINE MIR -38 224 98 * 538 214 68 8 chr15 18035592 18035709 -67660045 + L2 LINE L2 3190 3313 0 343 247 0 14 chr15 18035710 18035783 -67659971 - MIR SINE MIR -157 105 34 1921 120 7 7 chr15 18035884 18036160 -67659594 + AluSx SINE Alu 36 311 -1 2162 117 3 3 chr15 18036174 18036473 -67659281 + AluSx SINE Alu 1 299 -13 1740 151 28 11 chr15 18036483 18036768 -67658986 + AluJb SINE Alu 1 290 -22 2591 83 0 0 chr15 18037490 18037803 -67657951 - AluSq SINE Alu 0 313 1 1571 180 24 20 chr15 18038079 18038245 -67657509 - AluSx SINE Alu -7 295 131 2224 118 6 10 chr15 18038245 18038423 -67657331 - AluSx SINE Alu 0 312 134 2420 76 0 13 chr15 18038423 18038727 -67657027 - AluSq SINE Alu -13 300 1 2224 118 6 10 chr15 18038727 18038861 -67656893 - AluSx SINE Alu -178 134 1 2335 87 10 0 chr15 18038868 18039166 -67656588 - AluY SINE Alu -7 304 4 1571 180 24 20 chr15 18039166 18039285 -67656469 - AluSx SINE Alu -176 126 1 867 150 0 8 chr15 18039301 18039434 -67656320 - FLAM_C SINE Alu 0 133 2 240 299 111 17 chr15 18039741 18039858 -67655896 + MIR3 SINE MIR 3 130 -78 2598 170 114 28 chr15 18040150 18040323 -67655431 - L1MB8 LINE L1 -46 6132 5975 1744 183 7 7 chr15 18040323 18040629 -67655125 - AluJo SINE Alu -6 306 1 2598 170 114 28 chr15 18040629 18041043 -67654711 - L1MB8 LINE L1 -203 5975 5481 2033 163 0 13 chr15 18041043 18041356 -67654398 - AluJb SINE Alu -3 309 1 2598 170 114 28 chr15 18041356 18041415 -67654339 - L1MB8 LINE L1 -697 5481 5429 2321 117 0 0 chr15 18041415 18041724 -67654030 - AluSc SINE Alu 0 309 1 333 130 0 0 chr15 18041730 18041784 -67653970 - Alu SINE Alu -2 299 246 2276 91 34 0 chr15 18041816 18042113 -67653641 - AluSc SINE Alu -2 307 1 25 65 0 0 chr15 18042154 18042200 -67653554 + AT_rich Low_complexity Low_complexity 1 46 0 195 121 52 35 chr15 18042376 18042434 -67653320 + A-rich Low_complexity Low_complexity 2 60 0 306 0 0 0 chr15 18042508 18042542 -67653212 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 206 16 16 chr15 18042647 18042710 -67653044 + CT-rich Low_complexity Low_complexity 1 63 0 * 254 60 45 75 chr15 18042697 18042764 -67652990 + (TTCCC)n Simple_repeat Simple_repeat 1 65 0 753 212 95 0 chr15 18042766 18042903 -67652851 - FAM SINE Alu -35 150 1 1970 158 0 0 chr15 18042941 18043226 -67652528 + AluSx SINE Alu 9 293 -19 1467 173 77 112 chr15 18043943 18044596 -67651158 - L1MC5 LINE L1 -76 7885 7256 313 314 36 44 chr15 18044787 18044924 -67650830 - MLT1H LTR MaLR -245 304 169 2204 128 0 0 chr15 18045007 18045312 -67650442 + AluSx SINE Alu 1 305 -7 955 151 0 0 chr15 18045317 18045456 -67650298 + AluSq/x SINE Alu 1 139 -174 2156 139 0 3 chr15 18045457 18045766 -67649988 + AluSq SINE Alu 1 308 -5 1788 135 66 17 chr15 18046067 18046355 -67649399 - AluSx SINE Alu -10 302 1 23 54 0 0 chr15 18046355 18046392 -67649362 + AT_rich Low_complexity Low_complexity 1 37 0 1000 151 0 7 chr15 18046470 18046622 -67649132 - AluJb SINE Alu -161 151 1 2312 91 3 7 chr15 18046629 18046925 -67648829 - AluSx SINE Alu -17 295 1 315 191 15 0 chr15 18046931 18046999 -67648755 - L1MC/D LINE L1 -1988 5820 5752 2693 24 0 0 chr15 18047747 18048038 -67647716 - AluYa5 SINE Alu 0 311 21 282 163 0 0 chr15 18048910 18048953 -67646801 + Alu SINE Alu 1 43 -259 206 32 32 0 chr15 18048953 18048984 -67646770 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2313 97 30 0 chr15 18048989 18049289 -67646465 - AluSg SINE Alu -1 309 1 2342 113 0 0 chr15 18049297 18049608 -67646146 - AluSq SINE Alu -2 311 1 1389 173 10 51 chr15 18049608 18049786 -67645968 - AluJb SINE Alu 0 312 149 2479 67 0 25 chr15 18049786 18050102 -67645652 - AluY SINE Alu -3 308 1 1389 173 10 51 chr15 18050102 18050218 -67645536 - AluJb SINE Alu -163 149 30 2350 71 3 0 chr15 18050226 18050533 -67645221 - AluY SINE Alu 0 308 1 709 211 0 8 chr15 18050544 18050677 -67645077 - FLAM_C SINE Alu -1 132 1 793 483 75 8 chr15 18050679 18050827 -67644927 - AluJo SINE Alu -17 285 148 2130 99 25 0 chr15 18050827 18051109 -67644645 + AluY SINE Alu 15 303 -8 793 483 75 8 chr15 18051109 18051227 -67644527 - AluJo SINE Alu -154 148 1 238 284 98 20 chr15 18052044 18052146 -67643608 + MIR SINE MIR 41 150 -58 * 286 192 39 0 chr15 18052145 18052197 -67643557 - L2 LINE L2 -2 3311 3258 573 224 0 0 chr15 18052197 18052304 -67643450 - FAM SINE Alu -78 107 1 196 294 0 0 chr15 18052423 18052474 -67643280 - MER5B DNA MER1_type -127 51 1 2173 116 10 0 chr15 18054875 18055167 -67640587 + AluSx SINE Alu 2 296 -16 2318 118 0 6 chr15 18055169 18055482 -67640272 + AluSx SINE Alu 1 311 -1 187 289 39 70 chr15 18056407 18056535 -67639219 + MIR SINE MIR 40 163 -99 2145 119 0 10 chr15 18056630 18056932 -67638822 + AluSq SINE Alu 2 300 -13 186 103 0 0 chr15 18058324 18058353 -67637401 + (TG)n Simple_repeat Simple_repeat 1 29 0 2283 101 0 0 chr15 18058848 18059134 -67636620 + AluSx SINE Alu 2 287 -25 1856 170 14 0 chr15 18060925 18061213 -67634541 - AluJb SINE Alu -20 292 1 310 244 70 12 chr15 18062133 18062219 -67633535 + MIR SINE MIR 50 140 -122 769 145 0 0 chr15 18062743 18062860 -67632894 + FLAM_C SINE Alu 1 117 -16 2330 117 0 0 chr15 18062873 18063182 -67632572 - AluSg SINE Alu -1 309 1 522 128 76 7 chr15 18064897 18065187 -67630567 + (CA)n Simple_repeat Simple_repeat 1 310 0 1831 167 0 10 chr15 18065564 18065869 -67629885 - AluJb SINE Alu -6 306 5 1987 147 7 0 chr15 18065926 18066218 -67629536 + AluSx SINE Alu 1 294 -18 1890 169 0 22 chr15 18066277 18066596 -67629158 + AluJo SINE Alu 1 312 0 1616 175 36 26 chr15 18066705 18067014 -67628740 + AluJo SINE Alu 1 312 0 2073 114 17 17 chr15 18067090 18067389 -67628365 + AluSx SINE Alu 1 299 -13 1545 57 0 0 chr15 18067850 18068026 -67627728 - AluY SINE Alu -135 176 1 589 169 16 24 chr15 18068026 18068150 -67627604 - L1MC5 LINE L1 -842 7119 6997 330 130 0 0 chr15 18068177 18068223 -67627531 + FLAM SINE Alu 76 121 -12 1788 135 66 17 chr15 18068376 18068664 -67627090 - AluSx SINE Alu -10 302 1 23 54 0 0 chr15 18068664 18068701 -67627053 + AT_rich Low_complexity Low_complexity 1 37 0 985 153 0 7 chr15 18068779 18068929 -67626825 - AluJb SINE Alu -161 151 3 2312 91 3 7 chr15 18068939 18069235 -67626519 - AluSx SINE Alu -17 295 1 315 191 15 0 chr15 18069241 18069309 -67626445 - L1MC5 LINE L1 -1988 5820 5752 2461 87 0 0 chr15 18070056 18070368 -67625386 - AluSx SINE Alu 0 312 1 1389 173 10 51 chr15 18070368 18070546 -67625208 - AluJb SINE Alu 0 312 149 2479 67 0 25 chr15 18070546 18070862 -67624892 - AluY SINE Alu -3 308 1 1389 173 10 51 chr15 18070862 18070978 -67624776 - AluJb SINE Alu -163 149 30 2350 71 3 0 chr15 18070986 18071293 -67624461 - AluY SINE Alu 0 308 1 736 203 0 8 chr15 18071304 18071437 -67624317 - FLAM_C SINE Alu -1 132 1 1618 178 0 62 chr15 18071439 18071624 -67624130 - AluJo SINE Alu -27 285 125 2233 101 24 0 chr15 18071624 18071920 -67623834 + AluY SINE Alu 1 303 -8 1618 178 0 62 chr15 18071920 18072038 -67623716 - AluJo SINE Alu -187 125 1 238 284 98 20 chr15 18072855 18072957 -67622797 + MIR SINE MIR 41 150 -58 * 286 192 39 0 chr15 18072956 18073008 -67622746 - L2 LINE L2 -2 3311 3258 573 224 0 0 chr15 18073008 18073115 -67622639 - FAM SINE Alu -78 107 1 196 294 0 0 chr15 18073234 18073285 -67622469 - MER5B DNA MER1_type -127 51 1 2173 116 10 0 chr15 18075686 18075978 -67619776 + AluSx SINE Alu 2 296 -16 2206 103 10 3 chr15 18075980 18076281 -67619473 + AluSx SINE Alu 1 303 -9 303 294 184 0 chr15 18076299 18076408 -67619346 + L2 LINE L2 3182 3310 -3 23 68 0 0 chr15 18077137 18077181 -67618573 + GC_rich Low_complexity Low_complexity 1 44 0 269 189 34 54 chr15 18078020 18078168 -67617586 + (TATAA)n Simple_repeat Simple_repeat 3 147 0 21 0 0 0 chr15 18078226 18078247 -67617507 + AT_rich Low_complexity Low_complexity 1 21 0 3127 87 22 19 chr15 18078394 18078458 -67617296 + MER41A LTR ERV1 90 152 -402 1868 122 13 35 chr15 18078458 18078770 -67616984 - AluSx SINE Alu -7 305 1 3127 87 22 19 chr15 18078770 18079167 -67616587 + MER41A LTR ERV1 152 552 -2 337 164 0 0 chr15 18079167 18079222 -67616532 - LTR8 LTR ERV1 0 691 637 14315 230 19 23 chr15 18079257 18084478 -67611276 + HERVI LTR ERV1 2637 7784 -1 1383 224 110 39 chr15 18084481 18084845 -67610909 + LTR10A LTR ERV1 1 410 -199 2283 68 3 20 chr15 18084845 18085139 -67610615 + AluY SINE Alu 21 309 -2 1383 224 110 39 chr15 18085139 18085266 -67610488 + LTR10A LTR ERV1 410 527 -82 4876 68 3 0 chr15 18085266 18085902 -67609852 - LTR8 LTR ERV1 -53 638 1 2282 104 0 3 chr15 18085975 18086274 -67609480 - AluSc SINE Alu -11 298 1 1931 159 3 3 chr15 18086339 18086640 -67609114 - AluJb SINE Alu -11 301 1 3322 150 45 13 chr15 18086701 18086823 -67608931 - MER41B LTR ERV1 0 635 518 2190 139 0 0 chr15 18086823 18087132 -67608622 + AluSx SINE Alu 1 309 -3 3322 150 45 13 chr15 18087132 18087460 -67608294 - MER41B LTR ERV1 -117 518 157 2242 109 3 3 chr15 18087460 18087763 -67607991 - AluSc SINE Alu -6 303 1 3322 150 45 13 chr15 18087763 18087926 -67607828 - MER41B LTR ERV1 -478 157 1 1865 95 8 4 chr15 18087961 18088202 -67607552 - AluSx SINE Alu -59 253 12 1998 133 11 0 chr15 18088218 18088496 -67607258 - AluSg SINE Alu -1 309 29 1768 129 110 4 chr15 18089229 18089501 -67606253 - AluSc SINE Alu -8 301 1 2413 90 7 0 chr15 18089836 18090135 -67605619 - AluSp SINE Alu -12 301 1 2559 67 0 0 chr15 18090143 18090443 -67605311 - AluY SINE Alu -11 300 1 214 350 0 21 chr15 18091168 18091311 -67604443 + GA-rich Low_complexity Low_complexity 5 144 0 336 137 0 0 chr15 18091342 18091393 -67604361 - Alu SINE Alu -12 290 240 2356 89 0 29 chr15 18091699 18092012 -67603742 - AluSg SINE Alu -6 304 1 2069 99 4 0 chr15 18092012 18092275 -67603479 - AluSx SINE Alu -8 304 41 221 266 53 80 chr15 18092578 18092691 -67603063 + MIR3 SINE MIR 15 124 -84 1352 151 123 53 chr15 18092938 18093071 -67602683 + AluJo SINE Alu 1 123 -189 2179 91 3 17 chr15 18093071 18093369 -67602385 + AluSc SINE Alu 1 294 -15 1352 151 123 53 chr15 18093369 18093520 -67602234 + AluJo SINE Alu 123 305 -7 1123 148 16 11 chr15 18093667 18093834 -67601920 - AluSq SINE Alu -10 303 133 1961 103 37 57 chr15 18093834 18094134 -67601620 - AluSg SINE Alu -16 294 1 1123 148 16 11 chr15 18094134 18094148 -67601606 - AluSq SINE Alu -180 133 121 709 229 51 47 chr15 18094176 18094429 -67601325 + L1ME3A LINE L1 5848 6101 -69 259 159 0 0 chr15 18094473 18094517 -67601237 - Alu SINE Alu -258 44 1 2360 96 0 3 chr15 18094519 18094822 -67600932 - AluSx SINE Alu -10 302 1 1716 146 21 11 chr15 18095154 18095435 -67600319 - AluSx SINE Alu -5 307 24 1993 141 0 26 chr15 18095435 18095741 -67600013 + AluSx SINE Alu 1 298 -14 2115 113 37 10 chr15 18095839 18096139 -67599615 - AluSg SINE Alu -2 308 1 367 236 146 51 chr15 18096216 18096312 -67599442 - L1ME4a LINE L1 -7 6114 6029 2557 73 0 0 chr15 18096312 18096614 -67599140 + AluY SINE Alu 2 303 -8 367 236 146 51 chr15 18096614 18096695 -67599059 - L1ME4a LINE L1 -92 6029 5920 2130 129 10 0 chr15 18096718 18097027 -67598727 + AluSx SINE Alu 1 312 0 1243 146 16 0 chr15 18098586 18098771 -67596983 + AluJb SINE Alu 5 192 -120 1994 91 0 16 chr15 18098772 18099076 -67596678 + AluSp SINE Alu 35 334 0 699 135 0 0 chr15 18099078 18099182 -67596572 - FLAM_A SINE Alu -21 121 18 532 222 35 53 chr15 18099186 18099357 -67596397 - MIR SINE MIR -67 195 28 1546 186 16 50 chr15 18099404 18099726 -67596028 + AluJo SINE Alu 1 311 -1 1091 88 0 7 chr15 18099738 18099874 -67595880 + AluSq/x SINE Alu 1 135 -178 2253 118 3 0 chr15 18099874 18100170 -67595584 + AluSp SINE Alu 1 297 -16 2113 109 38 0 chr15 18100242 18100535 -67595219 - AluSp SINE Alu -9 304 1 2123 134 3 0 chr15 18101349 18101648 -67594106 + AluJb SINE Alu 1 300 -12 617 279 16 16 chr15 18101739 18101929 -67593825 + MIR SINE MIR 10 199 -63 25 31 0 0 chr15 18102182 18102214 -67593540 + AT_rich Low_complexity Low_complexity 1 32 0 1493 150 6 120 chr15 18104158 18104492 -67591262 - AluJo SINE Alu -6 296 1 1690 189 21 7 chr15 18106594 18106879 -67588875 - AluJo SINE Alu -23 289 1 1738 151 19 55 chr15 18106879 18107191 -67588563 - AluJo SINE Alu -11 301 1 556 240 127 58 chr15 18108363 18108606 -67587148 + L2 LINE L2 2802 3059 -254 387 314 86 7 chr15 18109154 18109294 -67586460 + L2 LINE L2 2904 3054 -218 2148 249 99 33 chr15 18109438 18110018 -67585736 - MER115 DNA AcHobo 0 693 66 1980 170 0 19 chr15 18110018 18110336 -67585418 - AluJb SINE Alu 0 312 1 2148 249 99 33 chr15 18110336 18110390 -67585364 - MER115 DNA AcHobo -627 66 17 1865 139 6 65 chr15 18110640 18110964 -67584790 + AluSx SINE Alu 3 307 -5 589 256 24 76 chr15 18111185 18111435 -67584319 + AluSg/x SINE Alu 71 307 -5 213 39 0 0 chr15 18112305 18112331 -67583423 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 769 97 0 83 chr15 18114491 18114636 -67581118 - FLAM_A SINE Alu 0 133 1 180 77 0 0 chr15 18116386 18116412 -67579342 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 363 44 0 0 chr15 18116411 18116456 -67579298 + (CA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr15 18119018 18119042 -67576712 + AT_rich Low_complexity Low_complexity 1 24 0 246 147 59 0 chr15 18119227 18119295 -67576459 + L1M4 LINE L1 4964 5035 -1111 2248 137 0 0 chr15 18119575 18120017 -67575737 - AluSq SINE Alu 0 442 1 806 71 0 0 chr15 18120597 18120696 -67575058 - AluSg/x SINE Alu -6 306 208 295 116 0 11 chr15 18120696 18120751 -67575003 - Alu SINE Alu -261 40 1 2296 95 0 14 chr15 18120782 18121078 -67574676 + AluSg SINE Alu 17 308 -2 213 139 0 0 chr15 18121358 18121401 -67574353 + (TG)n Simple_repeat Simple_repeat 1 43 0 2269 127 0 0 chr15 18122010 18122318 -67573436 + AluJb SINE Alu 3 310 -2 573 221 0 0 chr15 18122740 18122885 -67572869 + (TG)n Simple_repeat Simple_repeat 2 146 0 2314 107 0 0 chr15 18123005 18123295 -67572459 - AluSg SINE Alu -20 290 1 2300 111 7 0 chr15 18123318 18123624 -67572130 - AluSg SINE Alu -1 309 2 316 217 47 66 chr15 18123624 18123730 -67572024 - L1MC5 LINE L1 -48 7913 7810 1220 165 0 5 chr15 18123815 18124021 -67571733 - AluY SINE Alu -2 309 105 2283 98 0 10 chr15 18124645 18124941 -67570813 + AluSg SINE Alu 16 308 -2 213 139 0 0 chr15 18125221 18125264 -67570490 + (TG)n Simple_repeat Simple_repeat 1 43 0 2214 134 0 0 chr15 18125873 18126179 -67569575 + AluJb SINE Alu 3 308 -4 306 307 0 0 chr15 18126778 18126975 -67568779 + T-rich Low_complexity Low_complexity 1 197 0 358 368 18 0 chr15 18126975 18127089 -67568665 + C-rich Low_complexity Low_complexity 4 119 0 363 308 0 0 chr15 18127115 18127287 -67568467 + T-rich Low_complexity Low_complexity 1 172 0 573 221 0 0 chr15 18127730 18127875 -67567879 + (TG)n Simple_repeat Simple_repeat 2 146 0 2314 107 0 0 chr15 18127995 18128285 -67567469 - AluSg SINE Alu -20 290 1 2300 111 7 0 chr15 18128308 18128614 -67567140 - AluSg SINE Alu -1 309 2 316 217 47 66 chr15 18128614 18128720 -67567034 - L1MC5 LINE L1 -48 7913 7810 1753 173 3 10 chr15 18128805 18129117 -67566637 - AluY SINE Alu -1 310 1 227 256 64 0 chr15 18129671 18129749 -67566005 - L1MC5 LINE L1 -178 7783 7701 2517 64 0 0 chr15 18129770 18130065 -67565689 + AluY SINE Alu 1 295 -16 2444 170 61 71 chr15 18130072 18130219 -67565535 + L1MC3 LINE L1 6573 6720 -1065 612 188 0 8 chr15 18130219 18130369 -67565385 - FLAM_C SINE Alu 0 149 1 2444 170 61 71 chr15 18130369 18130605 -67565149 + L1MC3 LINE L1 6720 6957 -828 2043 148 3 16 chr15 18130605 18130915 -67564839 + AluSx SINE Alu 1 306 -6 2444 170 61 71 chr15 18130915 18130978 -67564776 + L1MC3 LINE L1 6957 7019 -766 2118 115 7 7 chr15 18130978 18131273 -67564481 + AluSx SINE Alu 1 295 -17 2444 170 61 71 chr15 18131273 18131654 -67564100 + L1MC3 LINE L1 7019 7402 -383 2059 133 36 7 chr15 18131654 18131956 -67563798 - AluSx SINE Alu -1 311 1 2444 170 61 71 chr15 18131956 18132092 -67563662 + L1MC3 LINE L1 7402 7538 -247 1818 164 7 17 chr15 18132092 18132390 -67563364 + AluJo SINE Alu 1 295 -17 2084 142 0 0 chr15 18132390 18132677 -67563077 + AluSx SINE Alu 1 290 -22 210 37 0 0 chr15 18132677 18132704 -67563050 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2444 170 61 71 chr15 18132712 18132750 -67563004 + L1MC3 LINE L1 7536 7561 -224 2329 36 47 4 chr15 18132754 18133032 -67562722 + AluY SINE Alu 1 290 -21 2288 108 0 0 chr15 18133042 18133337 -67562417 + AluSq SINE Alu 2 296 -17 1276 199 64 29 chr15 18133337 18133618 -67562136 - AluJo SINE Alu -21 291 1 1194 161 0 11 chr15 18133647 18133833 -67561921 + AluJb SINE Alu 118 301 -11 2234 128 0 13 chr15 18133947 18134081 -67561673 + AluSx SINE Alu 2 136 -176 2202 112 3 16 chr15 18134081 18134385 -67561369 + AluSq SINE Alu 1 300 -13 2234 128 0 13 chr15 18134385 18134563 -67561191 + AluSx SINE Alu 136 310 -2 1639 181 10 34 chr15 18134578 18134876 -67560878 + AluJb SINE Alu 6 296 -16 279 217 33 0 chr15 18135015 18135075 -67560679 - MER5A DNA MER1_type -5 184 123 925 133 70 0 chr15 18135075 18135218 -67560536 + AluSx SINE Alu 1 153 -159 352 197 84 0 chr15 18135438 18135509 -67560245 + MER5A DNA MER1_type 26 102 -87 2377 85 0 0 chr15 18135509 18135804 -67559950 + AluY SINE Alu 1 295 -16 2226 95 18 0 chr15 18135816 18136100 -67559654 + AluSq SINE Alu 1 289 -24 23 33 0 0 chr15 18136167 18136197 -67559557 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 18136244 18136266 -67559488 + AT_rich Low_complexity Low_complexity 1 22 0 1795 123 0 0 chr15 18136568 18136803 -67558951 - AluSx SINE Alu -77 235 1 340 185 31 0 chr15 18136803 18136868 -67558886 + MER5A DNA MER1_type 123 189 0 257 324 43 22 chr15 18136893 18137032 -67558722 - L2 LINE L2 -2 3311 3170 2492 70 3 0 chr15 18137600 18137902 -67557852 + AluSx SINE Alu 1 303 -9 236 196 0 71 chr15 18138534 18138590 -67557164 - AluSg/x SINE Alu -134 166 115 468 224 31 118 chr15 18138692 18138837 -67556917 - MIR SINE MIR -15 247 132 2565 58 0 10 chr15 18138837 18139148 -67556606 + AluSq SINE Alu 1 308 -5 468 224 31 118 chr15 18139148 18139256 -67556498 - MIR SINE MIR -130 132 16 650 227 130 24 chr15 18139537 18139744 -67556010 - MIR SINE MIR 0 262 34 197 307 40 40 chr15 18140221 18140322 -67555432 + L2 LINE L2 3198 3298 -15 2361 79 0 7 chr15 18140492 18140784 -67554970 - AluY SINE Alu -21 290 1 2076 127 13 10 chr15 18140908 18141208 -67554546 - AluSx SINE Alu -11 301 1 1145 185 14 5 chr15 18141283 18141499 -67554255 + MER20 DNA MER1_type 1 218 -1 761 230 58 58 chr15 18141603 18141748 -67554006 + MIR SINE MIR 2 149 -113 2518 64 3 0 chr15 18141748 18142045 -67553709 + AluSp SINE Alu 1 298 -15 761 230 58 58 chr15 18142045 18142156 -67553598 + MIR SINE MIR 148 258 -4 27 0 0 0 chr15 18142290 18142317 -67553437 + AT_rich Low_complexity Low_complexity 1 27 0 433 226 10 0 chr15 18142739 18142841 -67552913 - AluSg SINE Alu -206 104 2 754 168 85 93 chr15 18142842 18142868 -67552886 - L1ME1 LINE L1 -32 6134 6109 1685 170 7 47 chr15 18142868 18143006 -67552748 + AluJb SINE Alu 1 143 -169 2456 74 7 10 chr15 18143006 18143316 -67552438 + AluSq SINE Alu 5 313 0 1685 170 7 47 chr15 18143316 18143477 -67552277 + AluJb SINE Alu 143 288 -24 754 168 85 93 chr15 18143477 18143810 -67551944 - L1ME1 LINE L1 -57 6109 5802 455 190 63 28 chr15 18143823 18143965 -67551789 + L1MD3 LINE L1 7841 7987 -8 523 189 21 0 chr15 18144230 18144325 -67551429 + FRAM SINE Alu 49 145 -31 216 0 0 0 chr15 18144328 18144352 -67551402 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2367 68 0 0 chr15 18144355 18144634 -67551120 - AluY SINE Alu -32 279 1 260 202 0 34 chr15 18144634 18144695 -67551059 - L1M4 LINE L1 -1761 4385 4326 2400 93 0 3 chr15 18144695 18144995 -67550759 - AluSq SINE Alu -14 299 1 260 202 0 34 chr15 18144995 18145022 -67550732 - L1M4 LINE L1 -1820 4326 4300 244 206 87 65 chr15 18145050 18145142 -67550612 + MER102a DNA MER1_type 221 314 -16 393 149 0 0 chr15 18145779 18145846 -67549908 - MIR SINE MIR -117 145 79 582 228 35 108 chr15 18146576 18146808 -67548946 - MIR SINE MIR -37 225 11 209 151 0 94 chr15 18147929 18147982 -67547772 - MIR SINE MIR -12 250 203 1275 146 8 79 chr15 18147986 18148158 -67547596 - AluJb SINE Alu -5 307 124 2318 116 0 0 chr15 18148158 18148459 -67547295 - AluSp SINE Alu -12 301 1 2156 93 47 0 chr15 18148459 18148737 -67547017 - AluSq SINE Alu -17 296 6 2127 86 26 40 chr15 18148741 18149043 -67546711 - AluSq SINE Alu -15 298 1 1275 146 8 79 chr15 18149043 18149104 -67546650 - AluJb SINE Alu -190 122 85 2029 148 13 3 chr15 18149104 18149407 -67546347 - AluSx SINE Alu -6 306 1 367 233 57 57 chr15 18149407 18149566 -67546188 - MIR SINE MIR -56 206 48 1992 125 4 7 chr15 18149611 18149892 -67545862 - AluSx SINE Alu -6 306 27 206 228 35 53 chr15 18149941 18150055 -67545699 + (CTATA)n Simple_repeat Simple_repeat 5 116 0 1681 154 3 55 chr15 18150161 18150294 -67545460 + AluJo SINE Alu 11 122 -190 2392 88 0 3 chr15 18150294 18150591 -67545163 + AluSc SINE Alu 1 296 -13 1681 154 3 55 chr15 18150591 18150749 -67545005 + AluJo SINE Alu 122 287 -25 217 188 0 21 chr15 18150749 18150759 -67544995 + (TA)n Simple_repeat Simple_repeat 2 11 -37 1655 119 0 0 chr15 18150759 18150986 -67544768 + AluSg/x SINE Alu 86 312 0 217 188 0 21 chr15 18150986 18151023 -67544731 + (TA)n Simple_repeat Simple_repeat 11 48 0 274 154 15 15 chr15 18152313 18152378 -67543376 + CT-rich Low_complexity Low_complexity 6 70 0 2166 95 4 0 chr15 18153260 18153533 -67542221 - AluSc SINE Alu -18 291 18 1715 157 10 34 chr15 18156052 18156346 -67539408 + AluJb SINE Alu 1 287 -25 2086 144 3 0 chr15 18156356 18156648 -67539106 + AluSx SINE Alu 1 293 -19 2373 97 0 7 chr15 18156651 18156961 -67538793 + AluSg1 SINE Alu 1 308 -1 2239 133 0 0 chr15 18156968 18157277 -67538477 + AluSg SINE Alu 1 309 -1 24 32 0 0 chr15 18157277 18157308 -67538446 + AT_rich Low_complexity Low_complexity 1 31 0 2159 90 20 27 chr15 18157831 18158131 -67537623 + AluSg SINE Alu 1 298 -12 2470 71 3 0 chr15 18159919 18160216 -67535538 + AluSp SINE Alu 5 302 -11 202 304 78 49 chr15 18160983 18161085 -67534669 + MIR SINE MIR 102 206 -56 443 267 61 24 chr15 18161115 18161280 -67534474 - MIR SINE MIR -2 260 90 2226 124 3 0 chr15 18162371 18162670 -67533084 + AluSx SINE Alu 1 300 -12 2347 86 7 16 chr15 18163095 18163399 -67532355 + AluSq SINE Alu 2 302 -11 1569 179 17 14 chr15 18163414 18163705 -67532049 + AluJo SINE Alu 1 292 -20 1177 122 0 53 chr15 18163722 18163911 -67531843 - AluSg/x SINE Alu 0 310 132 2129 119 14 0 chr15 18163911 18164204 -67531550 - AluSx SINE Alu -15 297 1 659 196 0 0 chr15 18165589 18165701 -67530053 + FLAM_A SINE Alu 1 112 -30 516 111 0 0 chr15 18165702 18165783 -67529971 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2041 134 11 3 chr15 18165783 18166067 -67529687 - AluJb SINE Alu -26 286 1 2319 92 0 29 chr15 18166268 18166583 -67529171 - AluSg SINE Alu -4 306 1 1935 175 0 3 chr15 18166583 18166886 -67528868 - AluSx SINE Alu -10 302 1 823 186 35 17 chr15 18166926 18167098 -67528656 - MER5A DNA MER1_type 0 189 15 2357 86 0 41 chr15 18167199 18167514 -67528240 - AluSg1 SINE Alu -7 302 1 2203 116 10 0 chr15 18167651 18167953 -67527801 - AluSp SINE Alu -7 306 2 25 65 0 0 chr15 18170521 18170567 -67525187 + GC_rich Low_complexity Low_complexity 1 46 0 2459 91 0 0 chr15 18171412 18171719 -67524035 + AluSg1 SINE Alu 1 307 -2 1997 92 89 0 chr15 18171914 18172195 -67523559 + AluSc SINE Alu 3 308 -1 2155 106 25 0 chr15 18172775 18173058 -67522696 - AluSx SINE Alu -22 290 1 2139 56 0 4 chr15 18173102 18173354 -67522400 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 18173369 18173394 -67522360 + AT_rich Low_complexity Low_complexity 1 25 0 718 169 0 0 chr15 18173401 18173519 -67522235 - FLAM_C SINE Alu -15 118 1 418 274 121 88 chr15 18173705 18174126 -67521628 - L1MEc LINE L1 -2841 3541 831 1072 97 0 0 chr15 18174306 18174440 -67521314 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr15 18174615 18174638 -67521116 + AT_rich Low_complexity Low_complexity 1 23 0 324 291 6 109 chr15 18175040 18175215 -67520539 + HAL1 LINE L1 1046 1202 -1305 2329 116 0 3 chr15 18175411 18175722 -67520032 - AluSx SINE Alu -2 310 1 920 198 0 0 chr15 18176099 18176261 -67519493 - FAM SINE Alu -13 162 1 2320 121 0 0 chr15 18176488 18176793 -67518961 - AluSg SINE Alu -5 305 1 1242 133 38 5 chr15 18176880 18177090 -67518664 - AluSq SINE Alu -12 301 85 506 194 22 15 chr15 18177918 18178052 -67517702 - AluY SINE Alu -175 136 2 2347 52 10 3 chr15 18178053 18178341 -67517413 - AluY SINE Alu -18 293 4 434 234 22 87 chr15 18178348 18178368 -67517386 - L1MA10 LINE L1 -1 6333 6314 733 222 23 69 chr15 18178368 18178479 -67517275 - L1ME2 LINE L1 -9 6155 6057 1930 165 10 0 chr15 18178479 18178770 -67516984 - AluJb SINE Alu -18 294 1 733 222 23 69 chr15 18178770 18178874 -67516880 - L1ME2 LINE L1 -107 6057 5950 567 278 30 10 chr15 18178949 18179147 -67516607 + AluSg1 SINE Alu 2 203 -106 279 326 106 15 chr15 18179625 18179757 -67515997 - L2 LINE L2 -4 3268 3125 189 0 0 0 chr15 18179761 18179782 -67515972 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 1969 165 0 0 chr15 18180023 18180320 -67515434 + AluSg SINE Alu 1 297 -13 1692 130 19 8 chr15 18180672 18180934 -67514820 + AluSg SINE Alu 46 310 0 638 256 207 15 chr15 18180934 18181335 -67514419 - MLT1H1 LTR MaLR -64 531 1 1334 157 13 135 chr15 18181336 18181458 -67514296 - L1ME2 LINE L1 -207 5957 5822 789 113 0 70 chr15 18181458 18181600 -67514154 - FLAM_C SINE Alu -1 132 1 1334 157 13 135 chr15 18181600 18181808 -67513946 - L1ME2 LINE L1 -342 5822 5696 1840 171 3 10 chr15 18181808 18182106 -67513648 + AluJo SINE Alu 2 297 -15 1334 157 13 135 chr15 18182106 18182232 -67513522 - L1ME2 LINE L1 -468 5696 5556 2100 130 13 3 chr15 18182233 18182533 -67513221 - AluSq SINE Alu -10 303 1 1135 209 0 5 chr15 18182543 18182749 -67513005 - AluJo SINE Alu -20 292 88 1198 162 24 40 chr15 18182753 18182835 -67512919 - L1ME2 LINE L1 -608 5562 5480 2267 113 10 0 chr15 18182835 18183141 -67512613 - AluSq SINE Alu -4 309 6 1198 162 24 40 chr15 18183141 18183305 -67512449 - L1ME2 LINE L1 -690 5480 5320 222 98 122 0 chr15 18184033 18184074 -67511680 + MIR SINE MIR 10 55 -207 2277 110 0 0 chr15 18184079 18184378 -67511376 - AluY SINE Alu -12 299 1 526 88 0 0 chr15 18184402 18184470 -67511284 - U3 snRNA snRNA -149 68 1 2451 90 3 0 chr15 18184531 18184842 -67510912 - AluSp SINE Alu -1 312 1 1237 223 92 3 chr15 18184905 18185045 -67510709 + L1M4 LINE L1 4517 4643 -1503 1509 176 23 12 chr15 18185045 18185301 -67510453 + AluJb SINE Alu 1 259 -53 1237 223 92 3 chr15 18185301 18185488 -67510266 + L1M4 LINE L1 4643 4873 -1273 1426 227 145 39 chr15 18185563 18186026 -67509728 + MLT1F LTR MaLR 31 542 0 477 214 36 0 chr15 18186026 18186138 -67509616 + L1M4 LINE L1 4867 4982 -1164 680 62 0 31 chr15 18186138 18186290 -67509464 - AluY SINE Alu 0 311 197 1278 159 12 123 chr15 18187021 18187172 -67508582 + AluJb SINE Alu 1 167 -135 369 0 0 0 chr15 18187172 18187213 -67508541 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 88 7 0 chr15 18187213 18187507 -67508247 + AluSg SINE Alu 1 296 -14 1278 159 12 123 chr15 18187507 18187694 -67508060 + AluJb SINE Alu 165 302 0 1361 108 4 82 chr15 18187727 18187959 -67507795 - AluJb SINE Alu -13 299 86 2052 142 0 3 chr15 18187968 18188277 -67507477 - AluSx SINE Alu -4 308 1 892 198 0 0 chr15 18188286 18188468 -67507286 - AluSg/x SINE Alu 0 312 131 1348 118 28 19 chr15 18189076 18189287 -67506467 + AluSq SINE Alu 94 306 -7 213 367 44 0 chr15 18189389 18189479 -67506275 - MER5A DNA MER1_type 0 189 96 21 57 0 0 chr15 18191726 18191761 -67503993 + AT_rich Low_complexity Low_complexity 1 35 0 440 200 36 18 chr15 18192385 18192495 -67503259 - MIR SINE MIR -44 218 107 2058 86 68 0 chr15 18192842 18193122 -67502632 + AluSp SINE Alu 2 300 -13 23 0 0 0 chr15 18193130 18193153 -67502601 + AT_rich Low_complexity Low_complexity 1 23 0 1957 128 31 0 chr15 18193153 18193442 -67502312 - AluSq SINE Alu -14 299 2 909 187 26 0 chr15 18193450 18193605 -67502149 - AluJo SINE Alu -16 296 138 1400 99 0 52 chr15 18193617 18193828 -67501926 - AluSg/x SINE Alu -6 304 105 1138 111 17 39 chr15 18193828 18194009 -67501745 - AluSq SINE Alu -136 177 1 724 188 0 0 chr15 18194014 18194147 -67501607 - AluJo SINE Alu -169 133 1 23 0 0 0 chr15 18194148 18194171 -67501583 + AT_rich Low_complexity Low_complexity 1 23 0 1706 180 7 3 chr15 18194239 18194533 -67501221 + AluJo SINE Alu 1 295 -17 239 282 64 13 chr15 18194672 18194750 -67501004 - L2 LINE L2 -4 3309 3228 1381 156 19 0 chr15 18194886 18195124 -67500630 + AluJo SINE Alu 77 318 0 1301 129 203 21 chr15 18195276 18195562 -67500192 + MER44D DNA MER2_type 2 609 0 642 206 0 0 chr15 18195656 18195782 -67499972 - FLAM_A SINE Alu -3 139 14 2332 96 0 13 chr15 18195798 18196101 -67499653 - AluSp SINE Alu -14 299 1 1893 150 34 57 chr15 18196102 18196245 -67499509 - L1MC3 LINE L1 -7 7778 7633 1532 131 18 134 chr15 18196245 18196581 -67499173 - AluSx SINE Alu -5 297 1 1893 150 34 57 chr15 18196581 18196844 -67498910 - L1MC3 LINE L1 -152 7633 7381 325 82 41 0 chr15 18196982 18197031 -67498723 - L1MC3 LINE L1 -492 7293 7243 1503 264 138 39 chr15 18197451 18197576 -67498178 - L2 LINE L2 -11 3302 3191 2219 100 20 7 chr15 18197576 18197876 -67497878 + AluSx SINE Alu 1 304 -8 1503 264 138 39 chr15 18197876 18198345 -67497409 - L2 LINE L2 -122 3191 2770 1650 101 134 11 chr15 18198345 18198613 -67497141 + AluY SINE Alu 1 301 0 1503 264 138 39 chr15 18198613 18199018 -67496736 - L2 LINE L2 -543 2770 2193 818 234 9 35 chr15 18199018 18199245 -67496509 + AluJb SINE Alu 85 305 -7 971 125 0 0 chr15 18199683 18199819 -67495935 - AluSg/x SINE Alu -13 299 164 1073 139 0 0 chr15 18199900 18200051 -67495703 - AluSq/x SINE Alu -161 151 1 860 269 142 12 chr15 18200114 18200639 -67495115 + L2 LINE L2 2709 3313 0 433 237 43 0 chr15 18200647 18200740 -67495014 - MIR SINE MIR -87 175 79 183 80 0 0 chr15 18200828 18200853 -67494901 + (TATG)n Simple_repeat Simple_repeat 4 28 0 394 206 49 0 chr15 18201383 18201485 -67494269 + AluSq/x SINE Alu 5 111 -192 535 156 33 0 chr15 18201588 18201678 -67494076 + Tigger3(Golem) DNA MER2_type 148 240 -2789 231 155 87 68 chr15 18201718 18201821 -67493933 + Tigger3(Golem) DNA MER2_type 203 307 -2722 746 176 0 0 chr15 18201854 18201973 -67493781 - FRAM SINE Alu -20 156 38 1186 160 0 10 chr15 18201990 18202218 -67493536 - AluSg/x SINE Alu 0 308 83 434 121 15 0 chr15 18202218 18202284 -67493470 - AluSg/x SINE Alu -62 247 181 355 102 0 51 chr15 18202285 18202344 -67493410 - AluY SINE Alu -169 132 77 1318 150 5 9 chr15 18202345 18202558 -67493196 - AluSx SINE Alu -100 212 1 521 151 35 12 chr15 18202565 18202651 -67493103 - MER2 DNA MER2_type -257 88 1 181 281 58 50 chr15 18202798 18202919 -67492835 - L2 LINE L2 -2941 373 252 1974 102 49 11 chr15 18203458 18203742 -67492012 - AluSx SINE Alu -17 295 1 2220 108 0 3 chr15 18203742 18204039 -67491715 - AluSx SINE Alu -3 309 14 22 0 0 0 chr15 18204053 18204075 -67491679 + AT_rich Low_complexity Low_complexity 1 22 0 1923 144 7 20 chr15 18204082 18204381 -67491373 - AluJo SINE Alu -17 295 1 599 230 20 7 chr15 18204386 18204538 -67491216 + MIR SINE MIR 67 220 -42 189 107 0 0 chr15 18204682 18204710 -67491044 + (T)n Simple_repeat Simple_repeat 1 28 0 274 287 0 23 chr15 18204831 18204918 -67490836 + CT-rich Low_complexity Low_complexity 3 87 0 2396 84 0 13 chr15 18205167 18205477 -67490277 - AluY SINE Alu -5 306 1 2232 110 3 0 chr15 18206156 18206446 -67489308 - AluSg SINE Alu -19 291 1 3291 183 38 8 chr15 18206455 18207117 -67488637 - L1MB8 LINE L1 -1 6177 5496 2239 117 0 0 chr15 18207117 18207417 -67488337 - AluSc SINE Alu -9 300 1 434 281 66 29 chr15 18207438 18207680 -67488074 - AluJo SINE Alu -24 288 38 431 119 0 0 chr15 18208438 18208497 -67487257 - AluS SINE Alu -249 60 2 557 247 30 12 chr15 18208497 18208663 -67487091 - L1MB8 LINE L1 -1036 5110 4942 256 170 38 0 chr15 18208687 18208740 -67487014 - L1MB8 LINE L1 -1186 4960 4906 841 134 0 15 chr15 18208867 18209001 -67486753 + FLAM_C SINE Alu 11 142 -1 1940 125 30 23 chr15 18209004 18209307 -67486447 + AluSx SINE Alu 1 305 -7 311 336 30 15 chr15 18209344 18209475 -67486279 - MIR3 SINE MIR -9 199 67 4380 173 50 20 chr15 18209488 18209938 -67485816 - Cheshire DNA MER1_type 0 2420 1985 2095 112 21 0 chr15 18209938 18210224 -67485530 + AluSx SINE Alu 1 292 -20 4380 173 50 20 chr15 18210224 18210741 -67485013 - Cheshire DNA MER1_type -435 1985 1424 890 211 14 14 chr15 18210747 18210965 -67484789 - Cheshire DNA MER1_type -1569 851 634 1744 117 95 11 chr15 18210970 18211244 -67484510 - AluSx SINE Alu -6 306 10 680 121 0 0 chr15 18211247 18211338 -67484416 + AluSg/x SINE Alu 190 280 -32 316 229 12 24 chr15 18211357 18211440 -67484314 + Tigger5 DNA MER2_type 2242 2323 0 235 286 14 14 chr15 18211733 18211803 -67483951 - Charlie4 DNA MER1_type -4 1957 1888 245 314 86 19 chr15 18212739 18212844 -67482910 - L2 LINE L2 -4 3268 3157 608 219 104 26 chr15 18212846 18213038 -67482716 + MIR SINE MIR 5 211 -51 769 303 121 26 chr15 18213049 18213659 -67482095 - L2 LINE L2 -109 3204 2527 2263 102 7 3 chr15 18213732 18214025 -67481729 + AluSg1 SINE Alu 1 294 -15 2189 99 0 3 chr15 18214299 18214611 -67481143 - AluSx SINE Alu 0 311 1 1201 180 13 42 chr15 18214761 18215000 -67480754 - AluJo SINE Alu -52 260 29 205 247 136 12 chr15 18215149 18215230 -67480524 + L2 LINE L2 3214 3304 -9 2306 103 0 6 chr15 18215441 18215753 -67480001 + AluSx SINE Alu 1 310 -2 1289 131 5 40 chr15 18215874 18216096 -67479658 + AluJo SINE Alu 95 308 -4 815 196 89 13 chr15 18217012 18217170 -67478584 - AluJo SINE Alu -142 170 1 1219 149 128 79 chr15 18217379 18217521 -67478233 + MER2 DNA MER2_type 1 135 -209 2125 127 19 7 chr15 18217521 18217829 -67477925 - AluSx SINE Alu 0 312 1 1219 149 128 79 chr15 18217829 18218014 -67477740 + MER2 DNA MER2_type 135 344 0 237 265 118 0 chr15 18218320 18218388 -67477366 - L2 LINE L2 0 3272 3197 183 347 84 0 chr15 18218497 18218592 -67477162 - L2 LINE L2 -192 3080 2978 328 40 40 0 chr15 18218675 18218725 -67477029 + (TC)n Simple_repeat Simple_repeat 1 52 0 1411 164 0 68 chr15 18218725 18219005 -67476749 - AluJo SINE Alu -39 273 13 1682 146 13 62 chr15 18219127 18219436 -67476318 - AluJo SINE Alu -18 294 1 2344 105 0 6 chr15 18219698 18220012 -67475742 - AluSx SINE Alu 0 312 1 183 42 0 0 chr15 18220027 18220051 -67475703 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1682 126 95 4 chr15 18225829 18226127 -67469627 - AluSx SINE Alu 0 322 1 1559 160 94 25 chr15 18227749 18228024 -67467730 - AluJb SINE Alu -18 294 1 778 120 58 10 chr15 18228044 18228235 -67467519 - L1MB7 LINE L1 -16 6168 5894 1149 188 96 32 chr15 18228269 18228551 -67467203 - AluJo SINE Alu -2 300 1 755 173 20 20 chr15 18228807 18228957 -67466797 + L1PA16 LINE L1 6015 6164 -2 590 259 135 82 chr15 18228971 18229558 -67466196 - L1MC4a LINE L1 -1893 5915 5298 2120 122 3 0 chr15 18229604 18229898 -67465856 - AluSx SINE Alu -13 299 5 817 176 0 0 chr15 18229911 18230036 -67465718 - AluSq/x SINE Alu -187 125 1 2046 155 0 0 chr15 18230155 18230459 -67465295 - AluSx SINE Alu -7 305 2 344 163 0 2 chr15 18232565 18232622 -67463132 + MER2 DNA MER2_type 6 61 -178 851 189 184 0 chr15 18232647 18232848 -67462906 + L1MA9 LINE L1 5815 6052 -260 2495 52 0 3 chr15 18232872 18233162 -67462592 - AluY SINE Alu -22 289 1 420 235 0 0 chr15 18233412 18233493 -67462261 - MER2 DNA MER2_type -264 81 1 2358 93 0 16 chr15 18233673 18233985 -67461769 - AluSx SINE Alu -5 307 1 1673 203 3 3 chr15 18234515 18234811 -67460943 - AluJb SINE Alu -16 296 1 458 207 11 0 chr15 18235099 18235186 -67460568 + MER58 DNA MER1_type 128 2420 0 225 0 0 0 chr15 18235223 18235248 -67460506 + (CA)n Simple_repeat Simple_repeat 1 25 0 2253 135 0 0 chr15 18235562 18235874 -67459880 - AluSx SINE Alu 0 312 1 2343 109 0 0 chr15 18235886 18236189 -67459565 - AluSq SINE Alu 0 313 11 2065 130 7 0 chr15 18236262 18236546 -67459208 - AluSx SINE Alu -26 286 1 1972 163 3 7 chr15 18236548 18236854 -67458900 - AluSx SINE Alu -7 305 1 2314 107 0 3 chr15 18236866 18237174 -67458580 - AluSc SINE Alu -2 307 1 562 277 45 6 chr15 18237393 18237570 -67458184 - L1ME LINE L1 -400 5762 5579 553 264 62 44 chr15 18237571 18237798 -67457956 + L1M4 LINE L1 4797 5027 -1119 227 220 73 18 chr15 18237856 18237965 -67457789 - L1MB8 LINE L1 0 6178 6064 460 266 79 14 chr15 18238649 18238788 -67456966 - L2 LINE L2 -4 3268 3121 387 130 0 14 chr15 18238890 18238959 -67456795 + L1PA8 LINE L1 6100 6167 -5 1588 166 30 30 chr15 18239005 18239306 -67456448 + AluJo SINE Alu 1 301 -11 711 184 0 50 chr15 18239510 18239651 -67456103 + AluJb SINE Alu 162 295 -17 1408 281 64 116 chr15 18239651 18240091 -67455663 + HAL1 LINE L1 1354 1815 -692 2285 119 0 0 chr15 18240091 18240401 -67455353 + AluSx SINE Alu 1 310 -2 1408 281 64 116 chr15 18240401 18240659 -67455095 + HAL1 LINE L1 1815 2085 -422 2296 108 3 0 chr15 18240659 18240956 -67454798 + AluSp SINE Alu 5 302 -11 1408 281 64 116 chr15 18240956 18241122 -67454632 + HAL1 LINE L1 2085 2258 -249 1973 156 7 0 chr15 18241122 18241417 -67454337 + AluJb SINE Alu 1 297 -15 1408 281 64 116 chr15 18241417 18241747 -67454007 + HAL1 LINE L1 2258 2488 -19 1259 258 67 95 chr15 18241764 18242435 -67453319 + MER21B LTR ERV1 20 671 -192 226 300 27 18 chr15 18242756 18242866 -67452888 + L1M3 LINE L1 4745 4855 -1291 263 257 0 14 chr15 18242874 18242948 -67452806 + L1M2 LINE L1 5367 5439 -852 1033 240 128 40 chr15 18243102 18243233 -67452521 + L1 LINE L1 4483 4601 -1545 2158 112 0 32 chr15 18243233 18243545 -67452209 + AluSg SINE Alu 1 302 -8 1033 240 128 40 chr15 18243545 18243782 -67451972 + L1 LINE L1 4601 4899 -1247 2281 110 0 10 chr15 18243782 18244091 -67451663 - AluSg SINE Alu -2 308 3 1033 240 128 40 chr15 18244091 18244167 -67451587 + L1 LINE L1 4899 4967 -1179 430 162 0 0 chr15 18244848 18244916 -67450838 - AluS SINE Alu -240 69 2 2093 184 87 12 chr15 18244917 18245015 -67450739 + L1M3 LINE L1 4892 4981 -1202 2380 95 0 0 chr15 18245015 18245310 -67450444 + AluSx SINE Alu 6 300 -12 2093 184 87 12 chr15 18245310 18245961 -67449793 + L1M3 LINE L1 4981 5703 -480 1931 139 7 7 chr15 18245961 18246256 -67449498 + AluSx SINE Alu 1 295 -17 2093 184 87 12 chr15 18246256 18246330 -67449424 + L1M3 LINE L1 5703 5770 -413 391 262 81 34 chr15 18246354 18246503 -67449251 - L2 LINE L2 -545 2769 2614 370 275 101 27 chr15 18246523 18246781 -67448973 + L1ME LINE L1 5500 5776 -345 1710 120 102 0 chr15 18246947 18247213 -67448541 + AluSg SINE Alu 1 293 -17 188 324 70 0 chr15 18247338 18247409 -67448345 + L3 LINE CR1 1141 1216 -361 1658 188 3 19 chr15 18247724 18248038 -67447716 + AluJo SINE Alu 1 309 -3 1277 214 38 19 chr15 18248065 18248378 -67447376 + L1ME LINE L1 5458 5776 -386 229 203 0 16 chr15 18248614 18248678 -67447076 + (CGG)n Simple_repeat Simple_repeat 2 64 0 326 233 41 0 chr15 18249015 18249088 -67446666 + MER5A DNA MER1_type 1 76 -113 2243 103 7 0 chr15 18249088 18249389 -67446365 + AluSq SINE Alu 1 303 -10 1293 135 49 69 chr15 18249402 18249542 -67446212 + L1MA8 LINE L1 5989 6130 -161 2364 93 0 3 chr15 18249542 18249842 -67445912 + AluSg SINE Alu 1 299 -11 1293 135 49 69 chr15 18249842 18249979 -67445775 + L1MA8 LINE L1 6130 6262 -29 2351 90 0 3 chr15 18249979 18250269 -67445485 - AluSg SINE Alu -21 289 1 1293 135 49 69 chr15 18250269 18250294 -67445460 + L1MA8 LINE L1 6262 6286 -5 391 225 25 6 chr15 18250296 18250386 -67445368 + MER5A DNA MER1_type 43 141 -48 460 169 0 0 chr15 18250965 18251036 -67444718 + AluSp/q SINE Alu 226 296 -17 1960 115 39 0 chr15 18251242 18251562 -67444192 - AluSx SINE Alu 0 331 1 342 323 40 94 chr15 18251868 18252165 -67443589 - L2 LINE L2 -33 3239 2959 205 233 23 70 chr15 18252840 18252926 -67442828 - MIR3 SINE MIR -41 167 86 2292 95 7 0 chr15 18252959 18253253 -67442501 + AluSp SINE Alu 1 296 -17 2145 108 0 0 chr15 18253263 18253540 -67442214 + AluSx SINE Alu 20 296 -16 205 200 0 18 chr15 18257533 18257588 -67438166 + G-rich Low_complexity Low_complexity 3 56 0 196 326 87 0 chr15 18258609 18258701 -67437053 + MIR SINE MIR 17 116 -146 307 311 27 61 chr15 18258704 18258815 -67436939 - MER5A DNA MER1_type -4 185 79 2346 107 0 3 chr15 18258815 18259124 -67436630 - AluSx SINE Alu -4 308 1 307 311 27 61 chr15 18259124 18259160 -67436594 - MER5A DNA MER1_type -110 79 43 236 203 101 38 chr15 18259204 18259283 -67436471 + MIR SINE MIR 131 214 -48 2459 95 0 0 chr15 18259591 18259896 -67435858 + AluSc SINE Alu 1 305 -4 181 0 0 65 chr15 18259953 18259984 -67435770 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 274 276 57 19 chr15 18260308 18260413 -67435341 + MIR SINE MIR 23 131 -77 183 156 62 0 chr15 18260847 18260879 -67434875 - MIR SINE MIR -111 151 118 1165 180 23 143 chr15 18261523 18261734 -67434020 - AluYb8 SINE Alu 0 308 154 1805 121 0 4 chr15 18261734 18261973 -67433781 - AluSx SINE Alu -67 245 8 1165 180 23 143 chr15 18261973 18262111 -67433643 - AluYb8 SINE Alu -154 154 1 1673 91 5 0 chr15 18262323 18262532 -67433222 + AluSq SINE Alu 3 212 -101 204 97 0 0 chr15 18263459 18263490 -67432264 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 207 200 0 33 chr15 18265388 18265448 -67430306 + C-rich Low_complexity Low_complexity 4 61 0 32 26 0 0 chr15 18265741 18265780 -67429974 + GC_rich Low_complexity Low_complexity 1 39 0 23 86 0 0 chr15 18265831 18265889 -67429865 + GC_rich Low_complexity Low_complexity 1 58 0 29 78 0 0 chr15 18266000 18266064 -67429690 + GC_rich Low_complexity Low_complexity 1 64 0 224 253 0 108 chr15 18266700 18266783 -67428971 + MIR3 SINE MIR 81 154 -54 1917 132 0 68 chr15 18267270 18267596 -67428158 + AluJb SINE Alu 7 310 -2 872 199 13 0 chr15 18267596 18267752 -67428002 + AluJb SINE Alu 137 294 -18 358 233 101 82 chr15 18268424 18268583 -67427171 - MIR3 SINE MIR -12 196 35 810 129 0 71 chr15 18268589 18268729 -67427025 - AluSq SINE Alu -46 267 138 1635 143 26 75 chr15 18268853 18269160 -67426594 + AluJb SINE Alu 1 292 -20 1090 274 99 16 chr15 18269170 18269746 -67426008 - L1MEc LINE L1 -2048 4378 3755 259 235 171 5 chr15 18269743 18269826 -67425928 - L1MEc LINE L1 -2975 3451 3383 * 746 249 88 55 chr15 18269826 18270155 -67425599 + MER58B DNA MER1_type 2 341 0 259 235 171 5 chr15 18270155 18270258 -67425496 - L1MEc LINE L1 -3043 3383 3234 1527 273 62 29 chr15 18270263 18270707 -67425047 - L1MEc LINE L1 -3317 3109 2681 1874 144 25 3 chr15 18270707 18270992 -67424762 - AluSx SINE Alu -21 291 1 1527 273 62 29 chr15 18270992 18271370 -67424384 - L1MEc LINE L1 -3745 2681 2276 1106 194 118 49 chr15 18271370 18271716 -67424038 - MLT1A2 LTR MaLR -4 370 1 1527 273 62 29 chr15 18271716 18271752 -67424002 - L1MEc LINE L1 -4150 2276 2243 487 230 14 0 chr15 18271921 18272060 -67423694 + CT-rich Low_complexity Low_complexity 1 141 0 1973 141 0 0 chr15 18272176 18272446 -67423308 - AluSx SINE Alu 0 312 43 2156 146 43 73 chr15 18272511 18273044 -67422710 - L1MB8 LINE L1 0 6178 5662 2914 203 20 62 chr15 18273048 18273195 -67422559 - L1MB8 LINE L1 -1237 4909 4757 1645 168 0 77 chr15 18273195 18273505 -67422249 + AluJo SINE Alu 1 286 -26 2914 203 20 62 chr15 18273505 18274241 -67421513 - L1MB8 LINE L1 -1389 4757 4063 588 276 70 35 chr15 18274283 18274722 -67421032 - L1MEc LINE L1 -4766 1660 1203 207 0 0 0 chr15 18274722 18274745 -67421009 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 588 276 70 35 chr15 18274745 18274765 -67420989 - L1MEc LINE L1 -5223 1203 1185 2110 108 52 3 chr15 18275334 18275620 -67420134 - AluSx SINE Alu -12 300 1 812 151 0 16 chr15 18275636 18275762 -67419992 - AluSq/x SINE Alu -189 124 1 2590 24 0 0 chr15 18275780 18276073 -67419681 - L1PA3 LINE L1 0 6155 5863 2021 116 65 0 chr15 18276758 18277033 -67418721 + AluSg SINE Alu 1 293 -17 855 196 0 40 chr15 18277098 18277147 -67418607 - AluJo/FRAM SINE Alu 0 302 253 2401 52 49 0 chr15 18277147 18277434 -67418320 - AluY SINE Alu -10 301 1 855 196 0 40 chr15 18277434 18277557 -67418197 - AluJo/FRAM SINE Alu -49 253 137 2266 107 3 0 chr15 18277810 18278109 -67417645 - AluSc SINE Alu -9 300 1 296 157 0 101 chr15 18278346 18278435 -67417319 + L1MB5 LINE L1 6086 6165 -9 2138 142 3 0 chr15 18280027 18280338 -67415416 - AluSx SINE Alu 0 312 1 2255 103 0 7 chr15 18280491 18280792 -67414962 - AluY SINE Alu -12 299 1 2234 102 10 0 chr15 18280794 18281087 -67414667 - AluSc SINE Alu -13 296 1 308 177 81 16 chr15 18281280 18281342 -67414412 - L1ME4a LINE L1 -6 6115 6050 240 226 0 29 chr15 18281798 18281900 -67413854 + T-rich Low_complexity Low_complexity 5 103 0 2015 56 8 16 chr15 18282132 18282384 -67413370 - AluY SINE Alu -23 288 39 2443 77 46 44 chr15 18282549 18282664 -67413090 - L1PA8 LINE L1 -1 6171 6058 2527 59 7 7 chr15 18282664 18282968 -67412786 - AluY SINE Alu -7 304 1 2443 77 46 44 chr15 18282968 18283218 -67412536 - L1PA8 LINE L1 -114 6058 5805 22 0 0 0 chr15 18283758 18283780 -67411974 + AT_rich Low_complexity Low_complexity 1 22 0 220 246 18 0 chr15 18283781 18283838 -67411916 + CT-rich Low_complexity Low_complexity 2 59 0 296 262 30 18 chr15 18283850 18284014 -67411740 - HAL1b LINE L1 -510 838 673 299 236 107 110 chr15 18284145 18284408 -67411346 - Charlie8 DNA MER1_type -1026 1391 32 255 85 21 0 chr15 18284733 18284780 -67410974 + Alu SINE Alu 251 298 -4 2475 162 140 58 chr15 18285313 18285986 -67409768 - L1MC3 LINE L1 -11 7774 7047 1427 111 15 0 chr15 18286003 18286201 -67409553 + AluSg/x SINE Alu 101 301 -11 1662 173 9 31 chr15 18286237 18286555 -67409199 - AluJb SINE Alu -1 311 1 517 196 116 0 chr15 18286661 18286773 -67408981 - FLAM_A SINE Alu -8 125 1 2419 76 3 0 chr15 18286820 18287124 -67408630 + AluY SINE Alu 1 305 -6 459 149 0 14 chr15 18287636 18287710 -67408044 - AluS SINE Alu -240 73 1 1599 208 0 14 chr15 18287809 18288093 -67407661 - AluJb SINE Alu -18 294 15 246 243 159 0 chr15 18288201 18288295 -67407459 - MIR SINE MIR -64 144 37 2425 81 0 0 chr15 18288402 18288698 -67407056 + AluSg SINE Alu 1 296 -14 334 202 0 39 chr15 18288794 18288871 -67406883 - FRAM/FAM SINE Alu -103 63 1 2054 139 23 0 chr15 18289017 18289319 -67406435 - AluSx SINE Alu -3 309 1 1140 215 51 0 chr15 18289595 18289832 -67405922 - MLT1E LTR MaLR -3 590 342 495 252 14 28 chr15 18289877 18290020 -67405734 - MLT1E LTR MaLR -452 141 1 2144 116 0 3 chr15 18290759 18291060 -67404694 - AluSq SINE Alu -9 304 5 1783 140 3 14 chr15 18291508 18291793 -67403961 + AluJb SINE Alu 1 282 -30 1550 186 32 0 chr15 18291902 18292181 -67403573 - AluJb SINE Alu -24 288 1 2136 101 7 20 chr15 18292260 18292566 -67403188 - AluSp SINE Alu -5 308 7 581 242 0 8 chr15 18292879 18293011 -67402743 - FLAM_C SINE Alu -1 132 2 2147 134 3 0 chr15 18294141 18294440 -67401314 - AluSx SINE Alu -12 300 1 30 59 0 0 chr15 18294522 18294573 -67401181 + AT_rich Low_complexity Low_complexity 1 51 0 1433 149 90 30 chr15 18294671 18294963 -67400791 - AluJo SINE Alu 0 308 1 782 217 114 0 chr15 18295133 18295317 -67400437 - MER58A DNA MER1_type -1 223 19 222 230 0 68 chr15 18295857 18295931 -67399823 + GA-rich Low_complexity Low_complexity 2 70 0 1303 195 46 19 chr15 18296975 18297237 -67398517 - AluSx SINE Alu -39 273 5 514 107 13 0 chr15 18297370 18297445 -67398309 - AluSg SINE Alu -205 105 30 25 0 0 0 chr15 18297491 18297516 -67398238 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr15 18297679 18297706 -67398048 + AT_rich Low_complexity Low_complexity 1 27 0 2376 68 0 23 chr15 18298192 18298500 -67397254 + AluY SINE Alu 1 301 -10 25 31 0 0 chr15 18298841 18298873 -67396881 + AT_rich Low_complexity Low_complexity 1 32 0 282 233 151 62 chr15 18298992 18299175 -67396579 - MIR SINE MIR -39 223 17 1413 275 103 2 chr15 18299395 18299988 -67395766 + L1M4 LINE L1 3212 3864 -2282 355 62 0 0 chr15 18300009 18300057 -67395697 + Alu SINE Alu 251 298 -4 328 188 0 21 chr15 18300272 18300368 -67395386 + (TA)n Simple_repeat Simple_repeat 1 94 0 1927 251 68 25 chr15 18300732 18301478 -67394276 + L1M4 LINE L1 3923 4700 -1446 1917 157 0 7 chr15 18301485 18301779 -67393975 + AluJb SINE Alu 1 292 -20 718 294 58 48 chr15 18302022 18302279 -67393475 + L1ME3A LINE L1 4561 4814 -1332 1585 157 24 24 chr15 18302279 18302572 -67393182 + AluJo SINE Alu 1 293 -19 1939 123 25 4 chr15 18302576 18302874 -67392880 + AluSx SINE Alu 1 304 0 718 294 58 48 chr15 18302874 18303148 -67392606 + L1ME3A LINE L1 4816 5103 -1043 2204 125 0 0 chr15 18303212 18303508 -67392246 + AluSx SINE Alu 1 296 -16 1153 272 134 11 chr15 18303532 18304149 -67391605 + L1ME3A LINE L1 5254 5946 -224 2569 62 0 0 chr15 18304149 18304455 -67391299 - AluY SINE Alu -5 306 1 244 237 171 13 chr15 18304558 18304710 -67391044 + L1ME3A LINE L1 5988 6163 -7 1569 189 21 11 chr15 18305453 18305739 -67390015 - AluJo SINE Alu -23 289 1 25 31 0 0 chr15 18306276 18306308 -67389446 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 18306443 18306465 -67389289 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr15 18306643 18306664 -67389090 + (T)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr15 18306702 18306746 -67389008 + GC_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr15 18306746 18306775 -67388979 + AT_rich Low_complexity Low_complexity 1 29 0 294 296 121 34 chr15 18307089 18307295 -67388459 + L2 LINE L2 3090 3313 0 707 188 59 70 chr15 18307318 18307504 -67388250 + AluJb SINE Alu 110 293 -19 715 198 0 0 chr15 18307998 18308124 -67387630 + FLAM_A SINE Alu 1 126 -7 702 162 113 21 chr15 18308209 18308351 -67387403 + AluJb SINE Alu 139 293 -19 2593 0 0 7 chr15 18308358 18308691 -67387063 + AluYa5 SINE Alu 1 331 0 239 154 154 0 chr15 18308782 18308847 -67386907 - L1MA8 LINE L1 -11 6280 6206 571 214 107 78 chr15 18308973 18309216 -67386538 + MIR SINE MIR 13 262 0 1980 157 3 3 chr15 18309253 18309552 -67386202 + AluSx SINE Alu 1 299 -13 711 272 96 23 chr15 18309556 18309817 -67385937 + L2 LINE L2 3033 3312 -1 2298 93 0 3 chr15 18310854 18311156 -67384598 + AluSx SINE Alu 1 301 -11 2137 156 57 7 chr15 18311156 18311561 -67384193 - Tigger2a DNA MER2_type -9 425 1 582 148 312 5 chr15 18311562 18311751 -67384003 + MER5C DNA MER1_type 78 324 0 1778 159 0 43 chr15 18312346 18312648 -67383106 + AluSx SINE Alu 1 289 -23 1366 136 5 9 chr15 18313430 18313650 -67382104 + AluSq SINE Alu 81 299 -14 412 258 226 43 chr15 18315113 18315299 -67380455 - MIR SINE MIR -24 238 19 2227 97 3 3 chr15 18315334 18315642 -67380112 - AluY SINE Alu -3 308 1 243 268 0 56 chr15 18315860 18315931 -67379823 + MIR SINE MIR 196 262 0 343 26 53 158 chr15 18316108 18316151 -67379603 + MER41B LTR ERV1 480 513 -122 2023 137 7 0 chr15 18316151 18316451 -67379303 - AluSx SINE Alu -10 302 1 343 26 53 158 chr15 18316451 18316483 -67379271 + MER41B LTR ERV1 513 547 -88 1716 171 30 3 chr15 18317104 18317402 -67378352 - AluJb SINE Alu -6 306 1 2327 75 10 3 chr15 18319285 18319577 -67376177 + AluSc SINE Alu 1 294 -15 36 0 0 0 chr15 18320978 18321014 -67374740 + AT_rich Low_complexity Low_complexity 1 36 0 1267 137 0 118 chr15 18321014 18321284 -67374470 - AluY SINE Alu -73 238 1 2121 120 10 0 chr15 18321528 18321819 -67373935 + AluSx SINE Alu 1 294 -18 2267 91 14 0 chr15 18321948 18322235 -67373519 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr15 18324250 18324279 -67371475 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr15 18324387 18324450 -67371304 + AT_rich Low_complexity Low_complexity 1 63 0 2539 66 0 0 chr15 18324896 18325201 -67370553 + AluSc SINE Alu 1 305 -4 2158 110 0 10 chr15 18325541 18325840 -67369914 - AluSg SINE Alu -14 296 1 2353 99 0 7 chr15 18325936 18326239 -67369515 + AluSp SINE Alu 2 302 -11 21 71 0 0 chr15 18327654 18327696 -67368058 + AT_rich Low_complexity Low_complexity 1 42 0 216 158 0 0 chr15 18328007 18328045 -67367709 + (TA)n Simple_repeat Simple_repeat 1 38 0 1143 143 0 0 chr15 18328045 18328206 -67367548 - AluSg/x SINE Alu -23 287 127 261 245 66 9 chr15 18328589 18328695 -67367059 + MER113 DNA MER1_type? 4 115 -406 1986 118 7 20 chr15 18328713 18329019 -67366735 - AluSg SINE Alu -8 302 1 740 21 0 0 chr15 18329047 18329140 -67366614 + SVA Other Other 1294 1386 0 349 267 72 46 chr15 18329153 18329348 -67366406 + MER113 DNA MER1_type? 158 357 -164 41 36 0 0 chr15 18329398 18329453 -67366301 + AT_rich Low_complexity Low_complexity 1 55 0 1664 191 0 3 chr15 18329462 18329744 -67366010 - AluJo SINE Alu -31 281 1 2409 81 0 13 chr15 18330097 18330405 -67365349 + AluSx SINE Alu 1 304 -8 838 166 40 20 chr15 18330892 18331043 -67364711 + FRAM SINE Alu 6 159 -17 1827 165 0 10 chr15 18331047 18331338 -67364416 + AluSx SINE Alu 1 288 -24 523 180 16 49 chr15 18334067 18334189 -67361565 - MER58B DNA MER1_type 0 341 224 2164 103 3 20 chr15 18334215 18334516 -67361238 + AluSq SINE Alu 3 298 -15 1432 115 14 5 chr15 18334812 18335021 -67360733 - AluSg/x SINE Alu -20 290 80 2262 94 7 13 chr15 18335321 18335630 -67360124 - AluSx SINE Alu -5 307 1 1509 130 0 5 chr15 18335901 18336117 -67359637 + AluSx SINE Alu 2 216 -96 1785 149 10 13 chr15 18336682 18336984 -67358770 - AluJo SINE Alu -4 308 8 395 298 117 19 chr15 18337555 18337760 -67357994 + MIR SINE MIR 32 256 -6 663 303 145 18 chr15 18338586 18339084 -67356670 + L1ME LINE L1 5257 5817 -345 816 170 0 7 chr15 18339152 18339287 -67356467 - AluJo SINE Alu -178 134 1 1669 177 43 7 chr15 18339632 18339937 -67355817 - MER2 DNA MER2_type -28 317 2 485 239 157 35 chr15 18341650 18341905 -67353849 + HAL1 LINE L1 2165 2450 -57 225 0 0 0 chr15 18341912 18341937 -67353817 + (TG)n Simple_repeat Simple_repeat 2 26 0 714 203 8 8 chr15 18341943 18342076 -67353678 - FLAM_C SINE Alu 0 133 1 339 326 43 33 chr15 18342546 18342730 -67353024 - L2 LINE L2 -559 2755 2570 1499 150 21 108 chr15 18343209 18343542 -67352212 - AluYb8 SINE Alu -12 306 3 2005 128 29 10 chr15 18344935 18345262 -67350492 - AluSx SINE Alu 0 333 1 2620 55 0 7 chr15 18345586 18345894 -67349860 - AluY SINE Alu -5 306 1 2181 114 4 0 chr15 18345955 18346265 -67349489 + AluSp SINE Alu 1 311 0 2061 135 0 10 chr15 18346369 18346673 -67349081 + AluSx SINE Alu 1 301 -11 2473 70 0 0 chr15 18346746 18347046 -67348708 - AluY SINE Alu -11 300 1 1694 124 48 45 chr15 18347047 18347337 -67348417 - AluJb SINE Alu -21 291 1 180 0 0 0 chr15 18351796 18351816 -67343938 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 18352297 18352320 -67343434 + AT_rich Low_complexity Low_complexity 1 23 0 2368 76 0 7 chr15 18353338 18353641 -67342113 - AluY SINE Alu -10 301 1 209 161 36 54 chr15 18354040 18354096 -67341658 + L2 LINE L2 3259 3313 0 1380 146 176 23 chr15 18354358 18354659 -67341095 - MER7A DNA MER2_type -1 345 1 2346 89 10 0 chr15 18354844 18355146 -67340608 + AluSc SINE Alu 1 305 -4 224 331 59 29 chr15 18358108 18358244 -67337510 + MIR SINE MIR 41 180 -82 254 257 130 121 chr15 18359337 18359557 -67336197 - L2 LINE L2 0 3272 3047 2335 103 0 0 chr15 18359557 18359858 -67335896 + AluSg SINE Alu 1 301 -9 254 257 130 121 chr15 18359858 18359952 -67335802 - L2 LINE L2 -225 3047 2955 200 337 93 21 chr15 18361242 18361435 -67334319 + L3b LINE CR1 1254 1460 -123 2424 73 0 0 chr15 18361717 18362005 -67333749 - AluSg SINE Alu -22 288 1 906 136 15 0 chr15 18362009 18362141 -67333613 - AluJo SINE Alu -178 134 1 227 176 98 0 chr15 18362141 18362192 -67333562 - AluYb8 SINE Alu -118 190 135 2114 109 0 0 chr15 18363563 18363838 -67331916 - AluSx SINE Alu -3 309 35 1063 155 0 0 chr15 18363994 18364155 -67331599 + FRAM SINE Alu 1 161 -5 2389 58 7 42 chr15 18364464 18364774 -67330980 + AluY SINE Alu 1 299 -12 652 304 31 9 chr15 18364945 18365169 -67330585 - MIR SINE MIR -31 231 3 2372 65 0 0 chr15 18366239 18366517 -67329237 + AluY SINE Alu 16 293 -18 799 150 0 0 chr15 18366856 18366976 -67328778 + FLAM_A SINE Alu 1 120 -13 2532 70 0 0 chr15 18366998 18367300 -67328454 + AluSc SINE Alu 1 302 -7 966 185 0 56 chr15 18367309 18367504 -67328250 + AluJo SINE Alu 36 219 -93 23 68 0 0 chr15 18368192 18368236 -67327518 + AT_rich Low_complexity Low_complexity 1 44 0 841 286 74 48 chr15 18368242 18368848 -67326906 + L1ME4a LINE L1 5500 6121 0 2406 71 0 3 chr15 18368981 18369276 -67326478 + AluY SINE Alu 1 294 -17 243 0 0 0 chr15 18369276 18369303 -67326451 + (TA)n Simple_repeat Simple_repeat 2 28 0 1027 112 0 0 chr15 18369400 18369543 -67326211 - AluSx SINE Alu -15 295 153 438 114 0 148 chr15 18369546 18369634 -67326120 - AluSx SINE Alu -237 76 2 303 158 69 69 chr15 18369701 18369802 -67325952 - L1ME4a LINE L1 -22 6099 5999 24 0 0 0 chr15 18369848 18369872 -67325882 + AT_rich Low_complexity Low_complexity 1 24 0 2194 107 0 0 chr15 18369884 18370164 -67325590 - AluSg SINE Alu -30 280 1 38 22 0 0 chr15 18370426 18370471 -67325283 + AT_rich Low_complexity Low_complexity 1 45 0 2169 104 0 0 chr15 18370475 18370754 -67325000 - AluSg SINE Alu -31 279 1 206 309 191 0 chr15 18370796 18370922 -67324832 - L2 LINE L2 -4 3309 3160 226 317 119 22 chr15 18371203 18371471 -67324283 - L2 LINE L2 -457 2857 2564 490 240 240 6 chr15 18372458 18372641 -67323113 + MIR SINE MIR 25 250 -12 270 280 43 0 chr15 18372770 18372863 -67322891 + MER5B DNA MER1_type 2 98 -80 1858 87 4 0 chr15 18374336 18374566 -67321188 + AluSp SINE Alu 65 295 -18 2109 186 24 8 chr15 18375416 18375704 -67320050 + Charlie1 DNA MER1_type 5 287 -2474 2218 95 48 0 chr15 18375704 18375999 -67319755 + AluY SINE Alu 1 309 -2 2109 186 24 8 chr15 18375999 18376187 -67319567 + Charlie1 DNA MER1_type 287 2761 0 444 191 48 19 chr15 18376187 18376290 -67319464 - MLT1I LTR MaLR -16 393 288 2064 112 11 7 chr15 18376448 18376733 -67319021 + AluSx SINE Alu 1 286 -26 984 279 45 46 chr15 18377163 18377381 -67318373 - L2 LINE L2 0 3313 3096 2357 113 7 0 chr15 18377381 18377691 -67318063 + AluSq SINE Alu 1 312 -1 984 279 45 46 chr15 18377691 18378085 -67317669 - L2 LINE L2 -217 3096 2709 2275 78 0 10 chr15 18378085 18378405 -67317349 - AluY SINE Alu 0 311 1 984 279 45 46 chr15 18378405 18378531 -67317223 - L2 LINE L2 -604 2709 2584 475 271 53 43 chr15 18378535 18378742 -67317012 + MER63A DNA MER1_type 2 210 0 809 234 39 39 chr15 18379327 18379583 -67316171 - MER112 DNA MER1_type 0 256 1 2627 56 0 0 chr15 18380465 18380768 -67314986 + AluY SINE Alu 1 303 -8 2145 125 0 0 chr15 18380792 18381079 -67314675 - AluSx SINE Alu -25 287 1 2154 137 70 41 chr15 18382701 18382848 -67312906 - L1MB7 LINE L1 -2 6182 6041 1822 127 35 3 chr15 18382848 18383131 -67312623 - AluJb SINE Alu -20 292 1 2154 137 70 41 chr15 18383131 18383282 -67312472 - L1MB7 LINE L1 -143 6041 5896 1559 153 76 4 chr15 18383282 18383531 -67312223 - AluJo SINE Alu -45 267 1 2154 137 70 41 chr15 18383531 18383690 -67312064 - L1MB7 LINE L1 -288 5896 5711 2061 126 0 7 chr15 18384062 18384355 -67311399 + AluSx SINE Alu 1 291 -21 3526 105 133 36 chr15 18384395 18384731 -67311023 - Tigger3(Golem) DNA MER2_type 0 3029 2727 203 61 30 0 chr15 18384731 18384764 -67310990 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3526 105 133 36 chr15 18384764 18384969 -67310785 - Tigger3(Golem) DNA MER2_type -302 2727 2543 2211 123 0 0 chr15 18384969 18385270 -67310484 - AluSx SINE Alu -11 301 1 3526 105 133 36 chr15 18385270 18385413 -67310341 - Tigger3(Golem) DNA MER2_type -486 2543 2278 666 204 0 0 chr15 18385404 18385512 -67310242 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 209 191 0 chr15 18385514 18385629 -67310125 - MIR SINE MIR -25 237 101 2313 113 3 0 chr15 18385629 18385940 -67309814 + AluSx SINE Alu 1 312 0 1641 133 0 42 chr15 18385969 18386239 -67309515 + AluJo SINE Alu 37 289 -23 263 310 47 0 chr15 18386234 18386328 -67309426 - MIR SINE MIR -147 115 18 2302 82 3 0 chr15 18386358 18386649 -67309105 - AluSp SINE Alu -21 292 1 200 186 0 0 chr15 18386933 18386976 -67308778 + L2 LINE L2 2923 2965 -349 342 278 209 27 chr15 18388565 18388824 -67306930 - L2 LINE L2 0 3313 3008 2180 109 3 7 chr15 18390265 18390568 -67305186 + AluSx SINE Alu 1 302 -10 2297 84 3 3 chr15 18390603 18390914 -67304840 - AluY SINE Alu 0 311 1 2151 128 0 0 chr15 18390989 18391285 -67304469 - AluSq SINE Alu -17 296 1 1627 106 0 34 chr15 18391365 18391601 -67304153 + AluJb SINE Alu 73 300 -12 810 159 0 0 chr15 18391621 18391747 -67304007 + FLAM_A SINE Alu 10 135 -7 1684 161 39 42 chr15 18392945 18393255 -67302499 + AluJb SINE Alu 1 309 -3 1026 198 11 5 chr15 18393884 18394071 -67301683 - MER5A DNA MER1_type -1 188 1 296 293 61 10 chr15 18394174 18394273 -67301481 - MER5B DNA MER1_type -1 177 74 1557 242 61 40 chr15 18396391 18396936 -67298818 - MER90 LTR ERV1 -16 559 4 467 313 68 0 chr15 18397452 18397599 -67298155 + MIR SINE MIR 85 241 -21 2167 208 51 11 chr15 18398423 18398976 -67296778 + L1MD3 LINE L1 7405 7979 -16 796 257 126 5 chr15 18403073 18403295 -67292459 + MIR SINE MIR 14 262 0 344 263 12 0 chr15 18407317 18407397 -67288357 - MER94 DNA DNA -6 128 48 202 292 0 0 chr15 18408883 18408931 -67286823 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 86 7 20 chr15 18409524 18409828 -67285926 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr15 18409939 18409963 -67285791 + GC_rich Low_complexity Low_complexity 1 24 0 212 206 19 88 chr15 18410452 18410612 -67285142 + (CGGGG)n Simple_repeat Simple_repeat 1 149 0 226 244 0 0 chr15 18411128 18411173 -67284581 + CT-rich Low_complexity Low_complexity 4 48 0 232 209 295 0 chr15 18411329 18411434 -67284320 - L1MC4a LINE L1 -1868 5940 5805 373 224 46 121 chr15 18411516 18411690 -67284064 - L2 LINE L2 -4 3309 3149 255 281 24 37 chr15 18411708 18411790 -67283964 - L2 LINE L2 -367 2946 2866 1296 170 91 25 chr15 18411828 18412104 -67283650 - AluJo SINE Alu -18 294 1 830 163 208 6 chr15 18412297 18412475 -67283279 + AluJo SINE Alu 1 214 -98 239 247 4 4 chr15 18412476 18412553 -67283201 + MER52C LTR ERV1 1 60 -1218 3737 174 139 16 chr15 18412933 18413793 -67281961 + MER52A LTR ERV1 56 1021 -734 4228 166 46 5 chr15 18414125 18414892 -67280862 + MER52A LTR ERV1 957 1754 -1 504 153 0 0 chr15 18414892 18414964 -67280790 + AluJo SINE Alu 211 282 -30 263 381 41 22 chr15 18415473 18415743 -67280011 - L2 LINE L2 -453 2861 2587 851 272 46 52 chr15 18415745 18415901 -67279853 - L2 LINE L2 0 3313 3158 213 39 0 0 chr15 18415901 18415927 -67279827 + (TA)n Simple_repeat Simple_repeat 2 27 0 1905 161 3 0 chr15 18415927 18416231 -67279523 - AluJo SINE Alu -7 305 1 851 272 46 52 chr15 18416231 18416422 -67279332 - L2 LINE L2 -153 3160 2967 188 310 70 31 chr15 18416389 18416518 -67279236 - L2 LINE L2 -720 2594 2461 * 239 198 0 86 chr15 18416736 18416817 -67278937 + L2 LINE L2 3190 3263 -9 351 324 81 0 chr15 18419886 18420091 -67275663 + MIR SINE MIR 39 258 -4 2192 84 10 7 chr15 18420104 18420400 -67275354 - AluY SINE Alu -14 297 1 633 229 159 10 chr15 18422291 18422492 -67273262 + MIR SINE MIR 24 254 -8 183 326 0 0 chr15 18425305 18425354 -67270400 + L2 LINE L2 3210 3258 -14 1885 97 31 0 chr15 18425593 18425852 -67269902 - AluSx SINE Alu -13 299 33 236 203 0 31 chr15 18427581 18427645 -67268109 + (CTGGGG)n Simple_repeat Simple_repeat 3 64 0 345 289 114 18 chr15 18433107 18433221 -67262533 + MIR3 SINE MIR 6 130 -78 671 79 0 0 chr15 18434452 18434541 -67261213 - 5S rRNA rRNA -32 89 1 343 289 74 7 chr15 18438323 18438458 -67257296 - MER5B DNA MER1_type -4 174 31 233 188 42 0 chr15 18438647 18438695 -67257059 - MER5B DNA MER1_type -128 50 1 339 246 189 0 chr15 18440327 18440449 -67255305 + MIR SINE MIR 77 221 -41 1887 151 0 3 chr15 18440527 18440812 -67254942 + AluSx SINE Alu 2 285 -27 668 167 106 66 chr15 18441644 18441673 -67254081 + MLT1B LTR MaLR 1 27 -363 2157 121 0 0 chr15 18441673 18441970 -67253784 - AluSx SINE Alu -15 297 1 668 167 106 66 chr15 18441970 18442138 -67253616 + MLT1B LTR MaLR 27 206 -184 1889 124 14 3 chr15 18446842 18447125 -67248629 - AluSx SINE Alu -26 286 1 187 271 188 57 chr15 18447405 18447535 -67248219 - MIR SINE MIR -56 152 12 614 245 44 84 chr15 18447836 18448109 -67247645 - L1MD2 LINE L1 -15 6344 6083 270 261 54 45 chr15 18451713 18451824 -67243930 - MIR3 SINE MIR -87 121 10 191 234 18 36 chr15 18455011 18455122 -67240632 + (CCCA)n Simple_repeat Simple_repeat 4 112 0 236 273 30 0 chr15 18460150 18460216 -67235538 - MER91A DNA MER1_type 0 196 129 462 315 48 6 chr15 18460231 18460396 -67235358 - MER91A DNA MER1_type -24 172 1 2339 58 7 0 chr15 18461298 18461593 -67234161 + AluYa5 SINE Alu 2 298 -13 387 301 172 23 chr15 18463143 18463538 -67232216 + L2 LINE L2 2818 3271 -1 404 382 91 29 chr15 18464730 18465154 -67230600 - HAL1 LINE L1 -1208 1299 876 1806 238 103 24 chr15 18466790 18466841 -67228913 + L2 LINE L2 2398 2444 -869 2115 88 6 60 chr15 18466841 18467023 -67228731 - AluSx SINE Alu -12 300 141 2341 87 0 3 chr15 18467023 18467335 -67228419 - AluY SINE Alu 0 311 1 2115 88 6 60 chr15 18467335 18467469 -67228285 - AluSx SINE Alu -171 141 1 1806 238 103 24 chr15 18467469 18468072 -67227682 + L2 LINE L2 2444 3139 -174 2145 96 3 3 chr15 18468072 18468373 -67227381 - AluSx SINE Alu -11 301 1 1806 238 103 24 chr15 18468373 18468563 -67227191 + L2 LINE L2 3139 3313 0 523 309 74 15 chr15 18470039 18470258 -67225496 - MIR SINE MIR -30 232 3 1732 141 4 4 chr15 18471554 18471810 -67223944 - AluSx SINE Alu -56 256 1 852 191 7 7 chr15 18472469 18472621 -67223133 - AluJb SINE Alu -14 298 147 254 336 118 0 chr15 18473740 18473850 -67221904 + MER5B DNA MER1_type 49 171 -7 390 339 130 4 chr15 18473911 18474150 -67221604 + L2 LINE L2 2804 3072 -241 194 284 185 0 chr15 18474214 18474295 -67221459 + L2 LINE L2 3217 3312 -1 687 269 88 5 chr15 18474503 18474696 -67221058 - MER63A DNA MER1_type -1 209 1 241 300 60 10 chr15 18474834 18474934 -67220820 + MIR SINE MIR 66 170 -92 272 271 106 80 chr15 18475527 18475678 -67220076 + MIR3 SINE MIR 47 201 -7 244 358 88 10 chr15 18478395 18478588 -67217166 + L2 LINE L2 2853 3060 -212 29 0 0 0 chr15 18478992 18479021 -67216733 + AT_rich Low_complexity Low_complexity 1 29 0 775 178 8 0 chr15 18479021 18479150 -67216604 - FLAM_C SINE Alu -2 131 2 1918 98 18 4 chr15 18481638 18481912 -67213842 + AluSc SINE Alu 32 309 0 650 271 22 22 chr15 18483501 18483682 -67212072 - MIR3 SINE MIR -3 205 25 1292 120 0 0 chr15 18485543 18485726 -67210028 - AluSx SINE Alu -13 297 115 243 0 0 0 chr15 18485842 18485869 -67209885 + (CA)n Simple_repeat Simple_repeat 2 28 0 934 99 0 0 chr15 18486011 18486132 -67209622 - AluSx SINE Alu -190 123 3 469 343 22 6 chr15 18487063 18487241 -67208513 + MIR SINE MIR 28 208 -54 379 0 0 0 chr15 18487853 18487895 -67207859 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2210 100 0 0 chr15 18487895 18488175 -67207579 - AluSg SINE Alu -1 321 1 21 0 0 0 chr15 18488266 18488287 -67207467 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr15 18488895 18488924 -67206830 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr15 18489018 18489054 -67206700 + GC_rich Low_complexity Low_complexity 1 36 0 705 126 0 0 chr15 18489206 18489301 -67206453 + AluJ/FLAM SINE Alu 2 96 -216 376 199 18 26 chr15 18489309 18489422 -67206332 + L1MC4 LINE L1 1996 6983 -1339 339 272 22 22 chr15 18489341 18489433 -67206321 - L1MC4 LINE L1 -1339 6703 6612 * 349 244 61 69 chr15 18489884 18490015 -67205739 - L1ME4a LINE L1 -11 6110 5981 282 56 0 0 chr15 18490024 18490060 -67205694 + (CA)n Simple_repeat Simple_repeat 2 37 0 348 299 49 42 chr15 18490084 18490228 -67205526 - L1ME4a LINE L1 -248 5873 5729 290 224 119 75 chr15 18492026 18492160 -67203594 - L2 LINE L2 -23 3290 3151 1646 181 13 7 chr15 18492237 18492540 -67203214 - AluJo SINE Alu -7 305 1 4594 177 97 0 chr15 18492588 18493430 -67202324 + LTR28 LTR ERV1 1 924 -96 1882 155 0 10 chr15 18494099 18494389 -67201365 - AluJb SINE Alu -23 289 3 423 0 0 0 chr15 18494393 18494440 -67201314 + (TG)n Simple_repeat Simple_repeat 2 48 0 2080 125 24 0 chr15 18494441 18494730 -67201024 - AluSx SINE Alu -16 296 1 387 221 158 31 chr15 18495081 18495208 -67200546 + Charlie8 DNA MER1_type 12 154 -2263 255 233 0 0 chr15 18495344 18495404 -67200350 + Charlie8 DNA MER1_type 351 410 -2007 2374 84 3 0 chr15 18497149 18497435 -67198319 - AluSx SINE Alu -25 287 1 2281 124 0 0 chr15 18498979 18499278 -67196476 + AluSx SINE Alu 1 299 -13 334 224 26 40 chr15 18499382 18499458 -67196296 - MIR SINE MIR -104 104 30 333 406 29 6 chr15 18499999 18500174 -67195580 + MIR SINE MIR 33 211 -51 198 0 0 0 chr15 18500608 18500630 -67195124 + (TG)n Simple_repeat Simple_repeat 1 22 0 1376 114 0 0 chr15 18501356 18501540 -67194214 - AluSx SINE Alu -12 298 115 243 0 0 0 chr15 18501656 18501683 -67194071 + (CA)n Simple_repeat Simple_repeat 2 28 0 1015 98 0 0 chr15 18501825 18501948 -67193806 - AluSx SINE Alu -189 123 1 441 322 40 20 chr15 18502877 18503076 -67192678 + MIR SINE MIR 28 230 -32 2296 89 0 0 chr15 18503667 18503985 -67191769 - AluSg SINE Alu 0 318 1 309 51 0 0 chr15 18504784 18504823 -67190931 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 146 73 91 chr15 18504947 18505002 -67190752 + MIR3 SINE MIR 152 205 -3 300 320 165 24 chr15 18505458 18505664 -67190090 - MIR SINE MIR -12 250 16 328 297 25 25 chr15 18507133 18507251 -67188503 - L1MC4 LINE L1 -1 8041 7924 372 330 46 52 chr15 18507262 18507456 -67188298 + L1MD1 LINE L1 5769 5961 -223 299 294 64 9 chr15 18508564 18508673 -67187081 + LTR67 LTR ERVL 428 542 -15 1714 157 18 7 chr15 18508683 18508992 -67186762 + AluJo SINE Alu 1 312 0 649 297 107 20 chr15 18509237 18509584 -67186170 + HsTC2 DNA Tc2 215 591 -1307 1469 138 168 7 chr15 18509616 18509913 -67185841 - L1MB3 LINE L1 -36 6147 5803 519 286 29 4 chr15 18510051 18510227 -67185527 + MER5A DNA MER1_type 1 189 0 794 199 58 103 chr15 18510861 18511122 -67184632 + MIR SINE MIR 11 259 -3 191 231 0 0 chr15 18511139 18511178 -67184576 + L2 LINE L2 3262 3300 -13 484 267 37 51 chr15 18511184 18511366 -67184388 + L1ME1 LINE L1 5949 6129 -37 2003 123 3 14 chr15 18511366 18511650 -67184104 + AluSx SINE Alu 17 297 -15 484 267 37 51 chr15 18511650 18511684 -67184070 + L1ME1 LINE L1 6129 6162 -4 864 139 29 22 chr15 18512650 18512787 -67182967 + FLAM_C SINE Alu 1 138 -5 381 271 71 43 chr15 18513262 18513499 -67182255 + L2 LINE L2 2797 3050 -222 283 268 222 20 chr15 18513665 18513818 -67181936 + L2 LINE L2 3118 3301 -12 2848 155 16 78 chr15 18513820 18514439 -67181315 + L1MB1 LINE L1 5587 6167 -1 956 273 16 4 chr15 18514806 18515055 -67180699 - MIR SINE MIR -10 252 1 299 189 57 47 chr15 18515065 18515171 -67180583 + L1ME4a LINE L1 6015 6121 0 187 279 177 13 chr15 18516265 18516344 -67179410 + MIR3 SINE MIR 103 194 -14 301 148 36 9 chr15 18517484 18517570 -67178184 + L1M3 LINE L1 5352 5443 -712 273 323 23 31 chr15 18517569 18517699 -67178055 + L1MC4a LINE L1 5536 5664 -2144 * 413 97 0 136 chr15 18517729 18517805 -67177949 - L1MA8 LINE L1 -2 6289 6228 2046 126 0 14 chr15 18517805 18518150 -67177604 + AluJb SINE Alu 1 341 0 413 97 0 136 chr15 18518150 18518175 -67177579 - L1MA8 LINE L1 -63 6228 6201 23 33 0 0 chr15 18518493 18518523 -67177231 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr15 18518541 18518578 -67177176 + AT_rich Low_complexity Low_complexity 1 37 0 2566 67 0 0 chr15 18518704 18519002 -67176752 - AluSg SINE Alu -12 298 1 350 265 146 32 chr15 18519113 18519298 -67176456 + L1MC4a LINE L1 5695 5900 -1908 198 279 128 0 chr15 18520020 18520106 -67175648 - MIR SINE MIR -57 205 109 407 227 58 71 chr15 18520402 18520556 -67175198 - MIR SINE MIR -51 211 60 1650 175 16 30 chr15 18521337 18521640 -67174114 - AluJo SINE Alu -13 299 1 554 260 166 18 chr15 18521962 18522416 -67173338 + L2 LINE L2 2738 3253 -19 360 115 33 0 chr15 18522686 18522747 -67173007 + MIR SINE MIR 14 76 -186 641 270 70 64 chr15 18522747 18523241 -67172513 - MLT1H1 LTR MaLR -8 541 64 683 192 53 20 chr15 18523314 18523465 -67172289 + MIR SINE MIR 67 222 -40 1996 134 58 12 chr15 18524890 18525233 -67170521 - MER46B DNA MER2_type -2 234 1 22 0 0 0 chr15 18526304 18526326 -67169428 + AT_rich Low_complexity Low_complexity 1 22 0 814 86 0 19 chr15 18526440 18526545 -67169209 + AluSq/x SINE Alu 1 103 -209 1416 109 35 5 chr15 18526639 18526841 -67168913 + AluSc SINE Alu 93 300 -9 880 110 0 52 chr15 18527010 18527146 -67168608 - FLAM_C SINE Alu -4 129 1 381 296 65 9 chr15 18528202 18528418 -67167336 + L1MC4a LINE L1 5703 5930 -1878 1919 119 20 13 chr15 18529273 18529575 -67166179 - AluSq SINE Alu -8 305 2 358 304 40 67 chr15 18529718 18529942 -67165812 + L2 LINE L2 2966 3183 -89 352 209 363 16 chr15 18530489 18530671 -67165083 - MIR SINE MIR -5 257 13 396 259 43 36 chr15 18531093 18531232 -67164522 + MIR3 SINE MIR 4 143 -65 209 342 76 0 chr15 18531693 18531772 -67163982 - MIR SINE MIR -109 153 69 641 257 62 40 chr15 18532863 18533089 -67162665 + MIR SINE MIR 7 237 -25 1841 141 18 0 chr15 18533480 18533764 -67161990 + AluJo SINE Alu 1 289 -23 617 270 89 21 chr15 18533956 18534193 -67161561 - MIR SINE MIR -3 259 7 213 297 81 36 chr15 18534337 18534448 -67161306 + MIR3 SINE MIR 4 119 -89 263 227 67 0 chr15 18534775 18534850 -67160904 - MER116 DNA Mariner 0 80 1 2231 97 7 0 chr15 18535006 18535295 -67160459 + AluSg SINE Alu 1 291 -19 883 119 0 16 chr15 18535363 18535489 -67160265 - FLAM_C SINE Alu -9 124 1 1764 152 15 0 chr15 18535778 18536048 -67159706 + AluJo SINE Alu 1 274 -38 332 206 44 0 chr15 18536050 18536118 -67159636 - L1MCa LINE L1 -4362 2064 1994 2326 110 0 0 chr15 18536119 18536427 -67159327 + AluSx SINE Alu 1 308 -4 261 301 45 53 chr15 18537771 18537904 -67157850 + MIR3 SINE MIR 12 143 -65 306 0 0 0 chr15 18538033 18538067 -67157687 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 597 294 76 9 chr15 18538121 18538332 -67157422 + MIR SINE MIR 38 262 0 180 171 49 24 chr15 18539280 18539321 -67156433 - L3b LINE CR1 -106 1477 1436 2318 105 0 25 chr15 18539737 18540051 -67155703 + AluSx SINE Alu 1 306 -6 668 263 50 0 chr15 18540216 18540395 -67155359 - L3 LINE CR1 -26 1551 1364 742 201 15 8 chr15 18540412 18540546 -67155208 - AluJo SINE Alu -176 136 2 301 364 15 8 chr15 18540550 18540682 -67155072 - L3 LINE CR1 -224 1353 1221 309 360 42 33 chr15 18541346 18541560 -67154194 - L3b LINE CR1 -72 1511 1296 609 289 93 36 chr15 18542465 18542690 -67153064 + MIR SINE MIR 23 260 -2 2019 121 28 14 chr15 18542899 18543188 -67152566 + AluJb SINE Alu 1 293 -19 313 281 120 86 chr15 18543316 18543675 -67152079 + L1MEd LINE L1 814 1184 -4935 258 312 115 0 chr15 18544089 18544246 -67151508 + L2 LINE L2 1821 1995 -1319 473 232 141 15 chr15 18544289 18544709 -67151045 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 18544842 18545086 -67150668 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 18545071 18545233 -67150521 + L2 LINE L2 2966 3118 -154 * 2000 125 28 14 chr15 18545818 18546107 -67149647 - AluJb SINE Alu -19 293 1 525 283 40 77 chr15 18546312 18546431 -67149323 - MIR SINE MIR -2 260 153 2883 10 0 3 chr15 18546431 18546743 -67149011 - AluYa5 SINE Alu 0 311 1 525 283 40 77 chr15 18546743 18546870 -67148884 - MIR SINE MIR -109 153 23 394 291 25 0 chr15 18548418 18548552 -67147202 + L1ME LINE L1 5474 5607 -514 2108 138 3 3 chr15 18548560 18548864 -67146890 + AluJb SINE Alu 2 305 -7 217 265 66 99 chr15 18549005 18549156 -67146598 - MIR3 SINE MIR -40 168 23 563 191 119 0 chr15 18550262 18550402 -67145352 - MIR SINE MIR -18 244 89 2762 35 0 13 chr15 18550621 18550934 -67144820 + AluY SINE Alu 1 309 -2 2212 99 27 7 chr15 18551196 18551490 -67144264 + AluSx SINE Alu 1 300 -12 304 282 92 30 chr15 18551681 18551812 -67143942 - MIR SINE MIR -40 222 84 753 212 151 14 chr15 18551825 18552117 -67143637 - L1ME4a LINE L1 -111 6010 5679 2428 84 3 0 chr15 18552181 18552478 -67143276 - AluSx SINE Alu -9 303 6 230 273 15 0 chr15 18552979 18553045 -67142709 + MER103 DNA DNA 99 165 -1 915 330 119 58 chr15 18553175 18554149 -67141605 + L1ME4a LINE L1 3941 4854 -1292 5485 62 9 7 chr15 18554149 18554821 -67140933 + SVA Other Other 714 1386 0 2144 125 3 7 chr15 18554824 18555127 -67140627 + AluSx SINE Alu 1 302 -10 915 330 119 58 chr15 18555127 18555371 -67140383 + L1ME4a LINE L1 4855 5083 -1063 2566 75 0 0 chr15 18555371 18555676 -67140078 + AluY SINE Alu 1 305 -6 915 330 119 58 chr15 18555676 18555781 -67139973 + L1ME4a LINE L1 5083 5403 -743 1875 127 0 35 chr15 18555832 18556115 -67139639 + AluJo SINE Alu 13 285 -27 546 226 128 116 chr15 18556179 18556290 -67139464 + L1ME4a LINE L1 5524 5632 -489 1951 150 3 3 chr15 18556290 18556576 -67139178 - AluJb SINE Alu -26 286 1 546 226 128 116 chr15 18556576 18556862 -67138892 + L1ME4a LINE L1 5632 5926 -195 312 209 30 0 chr15 18556862 18556929 -67138825 - L3 LINE CR1 -891 686 618 480 243 18 101 chr15 18557013 18557206 -67138548 - MER5A DNA MER1_type 0 189 3 216 214 43 29 chr15 18557424 18557494 -67138260 + (CCCA)n Simple_repeat Simple_repeat 1 71 0 341 268 110 0 chr15 18557697 18557861 -67137893 + L2 LINE L2 1814 1995 -1319 473 232 141 15 chr15 18557904 18558324 -67137430 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 18558457 18558701 -67137053 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 18558686 18558848 -67136906 + L2 LINE L2 2966 3118 -154 * 218 394 61 15 chr15 18559193 18559391 -67136363 - L3 LINE CR1 -1295 282 76 972 135 0 0 chr15 18559960 18560093 -67135661 - FLAM_C SINE Alu 0 133 1 881 178 43 0 chr15 18560287 18560450 -67135304 - L1MB7 LINE L1 -16 6168 5999 289 100 83 33 chr15 18560451 18560511 -67135243 - L1M4 LINE L1 -1202 4944 4882 * 505 154 89 0 chr15 18560510 18560633 -67135121 - L1M4 LINE L1 -1876 4270 4137 2410 62 10 0 chr15 18560772 18561060 -67134694 + AluSp SINE Alu 5 295 -18 22 35 0 0 chr15 18564059 18564088 -67131666 + GC_rich Low_complexity Low_complexity 1 29 0 2425 98 0 0 chr15 18564811 18565118 -67130636 - AluSx SINE Alu -5 307 1 445 216 111 76 chr15 18565234 18565405 -67130349 + MER5A DNA MER1_type 7 183 -6 509 235 0 0 chr15 18565450 18565548 -67130206 - MER5A DNA MER1_type -83 106 9 348 321 113 6 chr15 18565550 18565709 -67130045 + MIR SINE MIR 19 194 -68 321 342 52 52 chr15 18565781 18565974 -67129780 + L1M4 LINE L1 4990 5182 -964 3294 125 10 0 chr15 18565990 18566510 -67129244 + L1MC1 LINE L1 5600 6124 -209 765 159 18 31 chr15 18566533 18566696 -67129058 - L1MC1 LINE L1 -19 6314 6154 1911 187 13 26 chr15 18566713 18567369 -67128385 + L1ME LINE L1 4971 5625 -541 494 233 1 1 chr15 18567369 18567503 -67128251 + L1MA10 LINE L1 5986 6278 -47 1224 138 38 5 chr15 18567504 18567714 -67128040 - MER2 DNA MER2_type -5 340 124 437 90 82 179 chr15 18567745 18567879 -67127875 - MER2 DNA MER2_type -210 135 15 23 0 0 0 chr15 18568690 18568713 -67127041 + AT_rich Low_complexity Low_complexity 1 23 0 3291 132 48 26 chr15 18568864 18568912 -67126842 + L1MB2 LINE L1 5564 5609 -562 1348 187 33 27 chr15 18568912 18569211 -67126543 + AluSx SINE Alu 1 301 -11 3291 132 48 26 chr15 18569211 18569380 -67126374 + L1MB2 LINE L1 5609 5773 -398 186 43 0 0 chr15 18569380 18569403 -67126351 + (CA)n Simple_repeat Simple_repeat 2 24 0 3291 132 48 26 chr15 18569403 18569769 -67125985 + L1MB2 LINE L1 5773 6161 -10 259 286 88 20 chr15 18569829 18569976 -67125778 + L1ME4a LINE L1 5963 6119 -2 274 101 0 0 chr15 18570123 18570170 -67125584 - L1MA2 LINE L1 0 6305 6259 265 136 0 0 chr15 18570182 18570226 -67125528 - L1MA3 LINE L1 -3 6302 6259 212 364 67 42 chr15 18570234 18570399 -67125355 - L3b LINE CR1 -253 1330 1162 1092 253 69 16 chr15 18570783 18571147 -67124607 + MLT1J LTR MaLR 44 426 -85 1714 205 104 60 chr15 18571309 18571864 -67123890 + MLT1G LTR MaLR 11 590 0 348 264 28 28 chr15 18571885 18571991 -67123763 - MLT1J LTR MaLR -64 447 342 * 450 186 79 26 chr15 18571981 18572154 -67123600 + MLT1J LTR MaLR 238 475 -36 261 361 39 29 chr15 18572178 18572383 -67123371 - L2 LINE L2 -1015 2299 2093 280 308 58 25 chr15 18572557 18572677 -67123077 + L2 LINE L2 3190 3313 0 344 284 29 62 chr15 18572694 18572902 -67122852 - L2 LINE L2 -1292 2022 1822 188 326 35 35 chr15 18573093 18573179 -67122575 + L2 LINE L2 3136 3221 -92 332 341 63 8 chr15 18573879 18574005 -67121749 - MER5A DNA MER1_type -7 182 50 1981 81 88 15 chr15 18574945 18575218 -67120536 + AluSx SINE Alu 1 293 -19 214 304 0 0 chr15 18576005 18576074 -67119680 + (CA)n Simple_repeat Simple_repeat 1 69 0 255 298 53 18 chr15 18576074 18576188 -67119566 + L2 LINE L2 3155 3272 0 529 280 47 57 chr15 18576987 18577180 -67118574 + MIR SINE MIR 20 210 -52 2035 121 17 27 chr15 18578461 18578759 -67116995 - AluJb SINE Alu -16 296 2 222 242 97 0 chr15 18578809 18578871 -67116883 + MIR SINE MIR 118 185 -77 357 163 0 113 chr15 18580405 18580485 -67115269 + MIR SINE MIR 191 261 -1 425 294 43 37 chr15 18580526 18580689 -67115065 - MIR SINE MIR -91 171 8 230 109 43 0 chr15 18582637 18582683 -67113071 + C-rich Low_complexity Low_complexity 5 52 0 186 43 0 0 chr15 18582682 18582705 -67113049 + (T)n Simple_repeat Simple_repeat 1 23 0 * 275 296 9 37 chr15 18583485 18583593 -67112161 + L2 LINE L2 3166 3270 -2 181 188 0 0 chr15 18584013 18584045 -67111709 - L3 LINE CR1 -6 1571 1540 862 282 118 0 chr15 18584055 18584402 -67111352 + LTR16B LTR ERVL 3 390 -74 972 241 21 33 chr15 18585132 18585373 -67110381 + MIR SINE MIR 4 241 -21 189 325 25 74 chr15 18585275 18585438 -67110316 - MIR SINE MIR -105 157 3 * 443 299 187 0 chr15 18586007 18586194 -67109560 + MIR SINE MIR 7 228 -34 811 176 0 0 chr15 18586473 18586604 -67109150 - FLAM_C SINE Alu -2 131 1 25 0 0 0 chr15 18586606 18586631 -67109123 + AT_rich Low_complexity Low_complexity 1 25 0 769 151 54 38 chr15 18586645 18586830 -67108924 + ORSL DNA AcHobo 66 253 -22 301 333 9 0 chr15 18587065 18587176 -67108578 - MIR SINE MIR -81 181 70 253 324 48 9 chr15 18587686 18587791 -67107963 - MIR3 SINE MIR -9 199 91 2286 125 0 3 chr15 18588006 18588319 -67107435 + AluJb SINE Alu 1 312 0 348 318 126 28 chr15 18589258 18589472 -67106282 + MIR SINE MIR 25 259 -3 195 229 0 0 chr15 18589654 18589689 -67106065 - L2 LINE L2 -86 3227 3193 441 231 8 17 chr15 18590247 18590364 -67105390 + AluJb SINE Alu 194 309 -3 340 313 130 21 chr15 18591326 18591518 -67104236 + MIR SINE MIR 47 259 -3 186 229 0 0 chr15 18591700 18591735 -67104019 - L2 LINE L2 -86 3227 3193 426 339 16 26 chr15 18592333 18592522 -67103232 - MIR SINE MIR 0 262 76 2123 197 40 33 chr15 18592541 18592760 -67102994 + L1MC/D LINE L1 4844 5060 -1171 2128 101 14 0 chr15 18592760 18593072 -67102682 + AluSx SINE Alu 1 316 0 2123 197 40 33 chr15 18593072 18593495 -67102259 + L1MC/D LINE L1 5060 5488 -743 276 309 147 0 chr15 18594371 18594507 -67101247 - MER5A DNA MER1_type -26 163 8 2017 143 3 7 chr15 18595688 18595982 -67099772 - AluJb SINE Alu -19 293 1 1422 153 164 11 chr15 18596017 18596279 -67099475 + AluSg1 SINE Alu 1 302 -7 1438 111 5 5 chr15 18597253 18597451 -67098303 - AluSg/x SINE Alu -15 297 100 331 112 11 45 chr15 18597853 18597942 -67097812 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 2076 120 58 0 chr15 18598020 18598312 -67097442 + AluSx SINE Alu 1 309 -3 362 194 0 21 chr15 18598329 18598422 -67097332 + GA-rich Low_complexity Low_complexity 4 94 0 328 281 116 0 chr15 18599408 18599529 -67096225 + L2 LINE L2 3179 3313 0 498 285 83 16 chr15 18599660 18599853 -67095901 - MIR SINE MIR -6 256 51 442 272 235 9 chr15 18603253 18603602 -67092152 + L2 LINE L2 2431 2858 -456 268 269 0 0 chr15 18603647 18603714 -67092040 + (CA)n Simple_repeat Simple_repeat 1 67 0 338 275 72 14 chr15 18603756 18603894 -67091860 + L2 LINE L2 2932 3077 -195 1881 149 6 37 chr15 18605434 18605756 -67089998 + AluJb SINE Alu 1 312 0 314 296 12 0 chr15 18607511 18607592 -67088162 + (CA)n Simple_repeat Simple_repeat 2 83 0 368 338 40 54 chr15 18607776 18607879 -67087875 + L2 LINE L2 2999 3102 -170 2214 108 13 3 chr15 18607879 18608185 -67087569 - AluSq SINE Alu -4 309 1 368 338 40 54 chr15 18608185 18608359 -67087395 + L2 LINE L2 3102 3272 0 315 211 13 26 chr15 18609554 18609630 -67086124 - L2 LINE L2 -19 3253 3179 309 111 0 0 chr15 18610234 18610288 -67085466 - Alu SINE Alu 0 302 249 1986 138 7 10 chr15 18610330 18610627 -67085127 - AluSx SINE Alu -16 296 1 202 311 108 27 chr15 18611249 18611397 -67084357 - L3b LINE CR1 -135 1448 1289 * 405 343 87 6 chr15 18611385 18611557 -67084197 - MIR SINE MIR 0 262 77 367 342 95 5 chr15 18612947 18613137 -67082617 - MIR SINE MIR -35 227 21 2752 94 29 0 chr15 18615565 18616010 -67079744 + MER1A DNA MER1_type 32 529 0 307 229 0 15 chr15 18616032 18616141 -67079613 - HsTC2 DNA Tc2 -73 1825 1 2822 175 70 5 chr15 18616157 18617103 -67078651 - MER52A LTR ERV1 0 1755 619 3527 126 6 2 chr15 18618951 18619476 -67076278 - MER1A DNA MER1_type 0 527 1 225 305 0 110 chr15 18619564 18619718 -67076036 - L2 LINE L2 -219 3053 2917 182 360 13 0 chr15 18620630 18620705 -67075049 - L2 LINE L2 -15 3257 3182 2492 78 13 0 chr15 18621570 18621877 -67073877 + AluY SINE Alu 1 311 0 4018 85 16 5 chr15 18621884 18622448 -67073306 - LTR19B LTR ERV1 -10 570 1 417 368 15 5 chr15 18622516 18622720 -67073034 + L1M4 LINE L1 4981 5186 -960 501 357 107 10 chr15 18622767 18623058 -67072696 + L1ME LINE L1 4664 4982 -1164 298 282 46 30 chr15 18623110 18623241 -67072513 + L1ME LINE L1 5412 5544 -577 2297 133 0 0 chr15 18623340 18623648 -67072106 + AluSx SINE Alu 1 308 -4 499 282 60 0 chr15 18624114 18624263 -67071491 + L2 LINE L2 2569 2726 -588 188 304 221 9 chr15 18624350 18624672 -67071082 + L2 LINE L2 2848 3237 -76 226 281 31 0 chr15 18624674 18624738 -67071016 + L1ME LINE L1 5728 5793 -377 499 233 275 0 chr15 18624773 18624962 -67070792 - MIR SINE MIR -12 250 10 2280 104 0 0 chr15 18625018 18625369 -67070385 - AluSx SINE Alu 0 351 1 1841 161 7 14 chr15 18625748 18626058 -67069696 - AluJb SINE Alu 0 308 1 597 274 132 0 chr15 18626274 18626478 -67069276 + MIR SINE MIR 3 233 -29 1528 225 15 45 chr15 18627361 18627625 -67068129 - L1ME1 LINE L1 -162 6004 5755 1841 149 27 30 chr15 18627625 18627926 -67067828 - AluJb SINE Alu -6 306 7 1528 225 15 45 chr15 18627926 18628061 -67067693 - L1ME1 LINE L1 -411 5755 5617 208 333 17 17 chr15 18628130 18628250 -67067504 + CT-rich Low_complexity Low_complexity 5 124 0 2119 154 76 2 chr15 18628526 18628923 -67066831 + MSTB LTR MaLR 1 426 0 226 199 32 19 chr15 18629619 18629775 -67065979 + (TG)n Simple_repeat Simple_repeat 1 158 0 495 259 9 0 chr15 18630774 18630882 -67064872 + MER81 DNA DNA 2 110 -4 252 214 86 14 chr15 18631210 18631280 -67064474 + MLT1K LTR MaLR 141 215 -373 670 250 83 50 chr15 18631357 18631597 -67064157 + MLT1K LTR MaLR 316 563 -25 269 286 0 58 chr15 18632599 18632753 -67063001 - L1ME3A LINE L1 -231 5939 5795 334 138 31 0 chr15 18632795 18632860 -67062894 + MER52A LTR ERV1 1 67 -1688 245 138 103 0 chr15 18633887 18633945 -67061809 - Charlie3 DNA MER1_type -2624 86 23 771 282 37 6 chr15 18634056 18634374 -67061380 - L1ME3A LINE L1 -514 5648 5320 473 354 88 30 chr15 18634444 18634806 -67060948 + L1ME4a LINE L1 5580 5962 -159 327 326 0 0 chr15 18634776 18634862 -67060892 - L1MC4 LINE L1 -1344 6698 6613 * 681 301 74 39 chr15 18634889 18635322 -67060432 + L1ME4a LINE L1 4300 4758 -1388 807 125 8 47 chr15 18635325 18635453 -67060301 + FLAM_C SINE Alu 1 123 -20 285 75 0 0 chr15 18635460 18635500 -67060254 + (CA)n Simple_repeat Simple_repeat 2 41 0 342 284 123 42 chr15 18635752 18635988 -67059766 + L1ME4a LINE L1 5094 5348 -798 673 250 35 12 chr15 18636010 18636182 -67059572 - MER5B DNA MER1_type -2 176 1 623 285 47 19 chr15 18636215 18636471 -67059283 + L1ME4a LINE L1 5401 5663 -2145 330 251 113 69 chr15 18637404 18637723 -67058031 + L1ME4a LINE L1 5789 6121 0 197 329 14 14 chr15 18637801 18637874 -67057880 - MIR SINE MIR -6 256 184 294 301 238 30 chr15 18638168 18638437 -67057317 + L3 LINE CR1 1250 1574 -3 575 228 42 104 chr15 18638938 18639197 -67056557 + MIR SINE MIR 20 262 0 635 287 171 22 chr15 18639306 18639783 -67055971 - L2 LINE L2 -1 3271 2866 2064 68 1 1 chr15 18639783 18640063 -67055691 + L1PA4 LINE L1 5874 6155 0 2052 56 0 4 chr15 18639796 18640063 -67055691 + L1PA5 LINE L1 5889 6154 0 635 287 171 22 chr15 18640063 18640268 -67055486 - L2 LINE L2 -406 2866 2487 1939 288 121 17 chr15 18640857 18642021 -67053733 + L2 LINE L2 2010 3312 -1 500 91 13 0 chr15 18642326 18642403 -67053351 - MSTC LTR MaLR 0 428 351 563 205 54 0 chr15 18642422 18642534 -67053220 - AluSq/x SINE Alu -193 119 2 1696 171 59 6 chr15 18642535 18642857 -67052897 - MSTD LTR MaLR -56 340 2 336 236 55 45 chr15 18643128 18643238 -67052516 + L1ME4a LINE L1 5770 5880 -241 2033 172 9 0 chr15 18643282 18643625 -67052129 + MER7A DNA MER2_type 3 346 0 25 0 0 0 chr15 18643710 18643735 -67052019 + AT_rich Low_complexity Low_complexity 1 25 0 520 258 68 0 chr15 18643978 18644110 -67051644 - MIR SINE MIR -109 153 13 984 181 28 0 chr15 18644556 18644738 -67051016 - MSTD LTR MaLR -198 198 12 215 295 0 0 chr15 18645352 18645413 -67050341 - MIR SINE MIR -29 233 173 397 162 54 0 chr15 18645452 18645526 -67050228 + MIR SINE MIR 76 153 -109 21 36 0 0 chr15 18646661 18646689 -67049065 + AT_rich Low_complexity Low_complexity 1 28 0 1994 151 0 0 chr15 18646890 18647174 -67048580 + AluJo SINE Alu 1 284 -28 210 37 0 0 chr15 18648044 18648071 -67047683 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 282 28 14 chr15 18649595 18649666 -67046088 + GA-rich Low_complexity Low_complexity 3 74 0 1846 128 95 0 chr15 18649696 18649970 -67045784 - AluSx SINE Alu -12 300 1 394 275 33 0 chr15 18651674 18651765 -67043989 + MIR SINE MIR 94 187 -75 294 273 45 0 chr15 18652956 18653044 -67042710 - MLT1K LTR MaLR 0 588 497 455 297 47 45 chr15 18653509 18653808 -67041946 + L1ME1 LINE L1 5629 5922 -244 * 2157 171 89 9 chr15 18653588 18654016 -67041738 + L1PA16 LINE L1 5703 6164 -2 24 0 0 0 chr15 18654124 18654148 -67041606 + AT_rich Low_complexity Low_complexity 1 24 0 922 211 0 0 chr15 18654148 18654304 -67041450 - FRAM SINE Alu -23 153 1 1250 258 56 15 chr15 18654345 18654737 -67041017 - L1ME3A LINE L1 -17 6153 5746 659 185 50 0 chr15 18654919 18655038 -67040716 + FLAM_C SINE Alu 1 125 -18 363 349 42 6 chr15 18655360 18655526 -67040228 - MIR SINE MIR -3 259 88 370 323 0 0 chr15 18655909 18656005 -67039749 - MER81 DNA DNA 0 114 19 428 309 100 14 chr15 18656216 18656426 -67039328 + MIR SINE MIR 23 250 -12 1644 191 10 19 chr15 18656631 18656940 -67038814 + AluJb SINE Alu 1 306 -6 503 250 103 0 chr15 18657116 18657272 -67038482 - L1ME3A LINE L1 -244 5926 5755 335 277 6 25 chr15 18657808 18657968 -67037786 - MLT1K LTR MaLR -360 228 41 1809 177 17 0 chr15 18658005 18658299 -67037455 + AluJo SINE Alu 4 302 -10 279 281 74 25 chr15 18658322 18658443 -67037311 + MIR3 SINE MIR 78 204 -4 564 221 145 95 chr15 18658793 18659055 -67036699 + MLT1E1 LTR MaLR 304 578 -76 1187 204 40 27 chr15 18659193 18659227 -67036527 - MLT2D LTR ERVL 0 414 382 222 37 0 0 chr15 18659227 18659254 -67036500 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 408 20 0 0 chr15 18659253 18659302 -67036452 + (TG)n Simple_repeat Simple_repeat 1 49 0 1187 204 40 27 chr15 18659254 18659318 -67036436 - MLT2D LTR ERVL -32 382 320 2311 116 10 0 chr15 18659318 18659621 -67036133 - AluSq SINE Alu -7 306 1 1187 204 40 27 chr15 18659621 18659868 -67035886 - MLT2D LTR ERVL -94 320 112 658 222 0 0 chr15 18659872 18660007 -67035747 - AluJo SINE Alu -176 136 2 401 203 29 0 chr15 18660011 18660124 -67035630 - MLT2C1 LTR ERVL -310 87 1 325 270 141 49 chr15 18660152 18660315 -67035439 - L1M4 LINE L1 -2175 3971 3794 1204 234 51 56 chr15 18660899 18661449 -67034305 - MER77 LTR ERV1 -4 601 54 1439 279 47 18 chr15 18661577 18661696 -67034058 - MER90 LTR ERV1 0 614 500 261 0 0 0 chr15 18661696 18661725 -67034029 + (TG)n Simple_repeat Simple_repeat 1 29 0 1439 279 47 18 chr15 18661725 18662111 -67033643 - MER90 LTR ERV1 -114 500 94 228 330 41 0 chr15 18662151 18662248 -67033506 + MIR SINE MIR 118 218 -44 1872 156 12 38 chr15 18662513 18662833 -67032921 + AluJb SINE Alu 1 312 0 2413 228 56 1 chr15 18662843 18663506 -67032248 + L1ME LINE L1 3763 4461 -1685 254 169 15 0 chr15 18663506 18663571 -67032183 + GA-rich Low_complexity Low_complexity 3 68 0 1948 142 30 17 chr15 18668262 18668558 -67027196 - AluJb SINE Alu -12 300 1 250 293 24 0 chr15 18668662 18668744 -67027010 + MER117 DNA MER1_type 4 87 -110 260 298 137 38 chr15 18668918 18669049 -67026705 + MER5A DNA MER1_type 45 188 -1 21 0 0 0 chr15 18670132 18670153 -67025601 + AT_rich Low_complexity Low_complexity 1 21 0 1295 182 0 0 chr15 18670194 18670397 -67025357 - AluJb SINE Alu -23 289 87 340 280 48 56 chr15 18670734 18670859 -67024895 + L1ME LINE L1 4541 4664 -1482 1861 162 0 0 chr15 18670864 18671142 -67024612 + AluSx SINE Alu 1 278 -34 326 123 18 0 chr15 18671143 18671200 -67024554 + G-rich Low_complexity Low_complexity 3 60 0 243 0 0 0 chr15 18671201 18671228 -67024526 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 603 295 70 49 chr15 18671231 18671719 -67024035 + L1ME LINE L1 4661 5158 -988 725 277 78 35 chr15 18671753 18672179 -67023575 + L1ME LINE L1 5259 5702 -468 2823 138 6 4 chr15 18672228 18672727 -67023027 + L1 LINE L1 3374 3873 -2273 2582 111 5 0 chr15 18672757 18673128 -67022626 + MER66A-int LTR ERV1 6304 6676 0 1384 206 35 12 chr15 18673135 18673543 -67022211 + MER66A LTR ERV1 27 478 0 898 192 17 0 chr15 18674280 18674452 -67021302 - MIR SINE MIR -71 191 17 1161 173 93 3 chr15 18675174 18675463 -67020291 - MER33 DNA MER1_type 0 324 10 187 263 79 13 chr15 18675720 18675796 -67019958 + MIR SINE MIR 118 198 -64 379 304 99 22 chr15 18675838 18676019 -67019735 - MIR SINE MIR -32 230 36 2450 94 0 0 chr15 18677178 18677485 -67018269 - AluSq SINE Alu -6 307 1 243 0 0 0 chr15 18677657 18677684 -67018070 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 27 62 0 0 chr15 18677746 18677794 -67017960 + AT_rich Low_complexity Low_complexity 1 48 0 273 287 150 49 chr15 18677874 18678260 -67017494 - L2 LINE L2 -170 3143 2716 376 250 77 58 chr15 18680838 18680994 -67014760 - MIR SINE MIR -39 223 65 2223 117 3 3 chr15 18681822 18682129 -67013625 + AluSq SINE Alu 1 307 -6 209 363 29 0 chr15 18682217 18682319 -67013435 - MIR SINE MIR -30 232 128 885 200 47 0 chr15 18685324 18685514 -67010240 + MIR SINE MIR 18 216 -46 233 346 26 13 chr15 18686107 18686263 -67009491 + MER65A LTR ERV1 175 332 -113 502 225 45 62 chr15 18686378 18686403 -67009351 - MIR SINE MIR -42 220 196 7702 60 10 4 chr15 18686403 18687404 -67008350 + LTR13 LTR ERVK 1 1007 0 502 225 45 62 chr15 18687404 18687556 -67008198 - MIR SINE MIR -66 196 46 22 0 0 0 chr15 18690712 18690734 -67005020 + AT_rich Low_complexity Low_complexity 1 22 0 1703 173 10 30 chr15 18690743 18691038 -67004716 + AluJo SINE Alu 1 289 -23 1386 194 55 10 chr15 18691778 18692088 -67003666 - MER33 DNA MER1_type 0 324 1 692 324 52 34 chr15 18692761 18693085 -67002669 + MLT1K LTR MaLR 61 390 -198 1741 248 205 6 chr15 18693129 18693665 -67002089 + MER69 DNA AcHobo 1 643 -583 1418 270 165 6 chr15 18693820 18694362 -67001392 + MLT1G LTR MaLR 1 590 0 949 153 40 201 chr15 18694362 18694705 -67001049 + MER69 DNA AcHobo 2045 2291 -235 1866 153 0 0 chr15 18694705 18695006 -67000748 - AluSx SINE Alu -5 307 7 949 153 40 201 chr15 18695006 18695138 -67000616 + MER69 DNA AcHobo 2291 2443 -83 234 264 0 0 chr15 18695263 18695316 -67000438 + MER69 DNA AcHobo 214 266 -960 363 230 82 22 chr15 18695323 18695458 -67000296 - MIR SINE MIR -89 173 31 265 204 0 0 chr15 18696019 18696068 -66999686 - L2 LINE L2 0 3313 3265 183 42 0 0 chr15 18696623 18696647 -66999107 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr15 18697841 18697865 -66997889 + AT_rich Low_complexity Low_complexity 1 24 0 2249 97 0 10 chr15 18698589 18698899 -66996855 + AluSx SINE Alu 1 307 -5 2300 94 0 0 chr15 18700261 18700559 -66995195 + AluSx SINE Alu 1 298 -14 2061 104 0 0 chr15 18701118 18701407 -66994347 + AluSq SINE Alu 1 289 -24 1658 153 35 11 chr15 18701534 18701821 -66993933 + AluJo SINE Alu 1 294 -18 2014 122 3 7 chr15 18702221 18702525 -66993229 + AluSq SINE Alu 3 305 -8 1008 248 26 26 chr15 18703070 18703373 -66992381 + L1ME3 LINE L1 5860 6162 0 232 310 0 0 chr15 18703546 18703604 -66992150 + HAL1 LINE L1 420 477 -2030 1289 221 26 145 chr15 18703607 18704084 -66991670 + HAL1 LINE L1 549 1081 -1426 2718 152 12 0 chr15 18704084 18704513 -66991241 - MER57B LTR ERV1 0 434 1 1289 221 26 145 chr15 18704513 18704734 -66991020 + HAL1 LINE L1 1081 1151 -1356 1844 169 0 6 chr15 18704734 18705047 -66990707 + AluJb SINE Alu 1 311 -1 1289 221 26 145 chr15 18705047 18705111 -66990643 + HAL1 LINE L1 1151 1221 -1286 311 212 12 0 chr15 18705125 18705210 -66990544 + CT-rich Low_complexity Low_complexity 1 86 0 244 197 16 0 chr15 18705210 18705271 -66990483 - FAM SINE Alu 0 179 118 978 252 132 48 chr15 18705284 18705725 -66990029 + HAL1 LINE L1 1233 1710 -797 210 94 31 0 chr15 18705748 18705780 -66989974 + MER5A DNA MER1_type 43 75 -114 * 425 261 76 0 chr15 18705776 18705868 -66989886 - MER5A DNA MER1_type -83 106 8 618 235 130 43 chr15 18705871 18706439 -66989315 + HAL1 LINE L1 1692 2359 -148 1932 122 31 0 chr15 18706439 18706727 -66989027 + AluSg SINE Alu 1 297 -13 618 235 130 43 chr15 18706727 18706854 -66988900 + HAL1 LINE L1 2359 2474 -33 2227 105 0 0 chr15 18706867 18707161 -66988593 + AluSp SINE Alu 1 294 -19 415 226 69 0 chr15 18707511 18707613 -66988141 - MLT1K LTR MaLR 0 588 480 243 215 283 62 chr15 18707624 18707762 -66987992 + MIR SINE MIR 47 153 -109 2061 152 131 8 chr15 18707762 18708143 -66987611 - MSTA LTR MaLR 0 428 1 243 215 283 62 chr15 18708143 18708181 -66987573 + MIR SINE MIR 153 262 0 2298 82 0 7 chr15 18708181 18708487 -66987267 + AluY SINE Alu 2 305 -6 609 287 76 32 chr15 18708499 18708813 -66986941 + L1MC/D LINE L1 1340 1690 -886 434 293 74 58 chr15 18709177 18709337 -66986417 + L1MC/D LINE L1 2053 2220 -4176 2032 128 0 0 chr15 18709337 18709635 -66986119 + AluSx SINE Alu 1 298 -14 434 293 74 58 chr15 18709635 18709716 -66986038 + L1MC/D LINE L1 2220 2298 -4098 741 278 70 73 chr15 18709790 18710458 -66985296 + L1MC/D LINE L1 2279 2944 -3271 3620 147 75 168 chr15 18710474 18711029 -66984725 - L1MC3 LINE L1 -6 7779 7174 367 238 0 48 chr15 18711029 18711134 -66984620 - MLT1F1 LTR MaLR -433 134 35 3620 147 75 168 chr15 18711134 18711357 -66984397 - L1MC3 LINE L1 -611 7174 6932 2176 91 0 20 chr15 18711357 18711655 -66984099 - AluSx SINE Alu -20 292 1 3620 147 75 168 chr15 18711655 18712175 -66983579 - L1MC3 LINE L1 -853 6932 6506 2089 125 0 25 chr15 18712208 18712527 -66983227 + AluSx SINE Alu 1 311 -1 268 323 31 21 chr15 18712658 18712850 -66982904 + L1MC/D LINE L1 4562 4755 -1460 401 260 136 39 chr15 18712878 18713079 -66982675 + L1MC/D LINE L1 4808 4988 -1362 1815 158 7 0 chr15 18713079 18713370 -66982384 - AluJb SINE Alu -19 293 1 401 260 136 39 chr15 18713370 18713843 -66981911 + L1MC/D LINE L1 4988 5555 -795 1478 180 36 36 chr15 18714381 18714715 -66981039 - MLT2D LTR ERVL -9 405 64 1333 209 90 61 chr15 18714733 18715039 -66980715 - LTR16A1 LTR ERVL 0 457 133 2011 173 73 5 chr15 18715039 18715409 -66980345 + MLT2C1 LTR ERVL 1 395 -2 1333 209 90 61 chr15 18715409 18715546 -66980208 - LTR16A1 LTR ERVL -324 133 1 1224 307 29 50 chr15 18715712 18716291 -66979463 - ERVL LTR ERVL -418 5346 4780 964 294 48 3 chr15 18716504 18716813 -66978941 - ERVL LTR ERVL -1274 4490 4168 315 49 0 0 chr15 18717241 18717282 -66978472 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 287 80 39 chr15 18717526 18717718 -66978036 + MIR SINE MIR 42 248 -14 1548 232 78 14 chr15 18717830 18718266 -66977488 + LTR16B LTR ERVL 1 464 0 4612 180 35 31 chr15 18719164 18720090 -66975664 - L1MC1 LINE L1 -220 6113 5184 2234 102 3 0 chr15 18720090 18720393 -66975361 - AluSx SINE Alu -8 304 1 4612 180 35 31 chr15 18720393 18721302 -66974452 - L1MC1 LINE L1 -1149 5184 4280 432 279 128 58 chr15 18721307 18721565 -66974189 - L1 LINE L1 -1147 4999 4724 880 138 0 0 chr15 18721605 18721728 -66974026 - FLAM_C SINE Alu -9 124 2 1729 139 13 10 chr15 18721869 18722172 -66973582 - AluSq SINE Alu -9 304 1 1766 131 3 50 chr15 18722185 18722510 -66973244 - AluSx SINE Alu 0 311 1 360 198 0 12 chr15 18722512 18722593 -66973161 - L1PB4 LINE L1 -4 6152 6073 727 167 47 11 chr15 18722613 18722817 -66972937 + LTR1 LTR ERV1 1 252 -533 * 1361 68 117 10 chr15 18722813 18723019 -66972735 + LTR1 LTR ERV1 558 785 0 4040 131 5 2 chr15 18723021 18723617 -66972137 - L1PA16 LINE L1 -122 6044 5447 237 196 20 0 chr15 18723618 18723669 -66972085 + L1M4 LINE L1 2984 3035 -3111 1300 159 13 121 chr15 18723674 18723988 -66971766 + AluJo SINE Alu 1 280 -32 494 187 0 9 chr15 18723998 18724105 -66971649 + GA-rich Low_complexity Low_complexity 2 107 0 735 144 6 69 chr15 18724111 18724310 -66971444 - L1M LINE L1 -743 5403 5226 2190 189 26 52 chr15 18724416 18724950 -66970804 - L1 LINE L1 -853 5293 4774 1266 188 12 0 chr15 18724984 18725229 -66970525 + L1MB1 LINE L1 5938 6185 -4 836 164 29 18 chr15 18725268 18725439 -66970315 + L1MA10 LINE L1 6161 6333 -1 611 215 114 13 chr15 18725456 18725693 -66970061 + L1M4 LINE L1 3052 3312 -2834 253 236 18 0 chr15 18725693 18725748 -66970006 + MIR3 SINE MIR 128 183 -25 830 251 67 50 chr15 18726942 18727301 -66968453 - MLT1A1 LTR MaLR 0 365 1 277 301 29 0 chr15 18727994 18728097 -66967657 - MIR SINE MIR 0 262 157 2138 100 0 7 chr15 18728264 18728564 -66967190 + AluSx SINE Alu 1 298 -14 2507 132 22 27 chr15 18728815 18729224 -66966530 - MSTB1 LTR MaLR -2 430 24 335 328 82 25 chr15 18729812 18730129 -66965625 + L1MEd LINE L1 908 1242 -4877 1601 174 33 10 chr15 18730170 18730469 -66965285 - AluJo SINE Alu -6 306 1 339 248 31 31 chr15 18730914 18731043 -66964711 - AluSq SINE Alu -146 157 29 337 320 120 39 chr15 18731388 18731612 -66964142 - L1MEd LINE L1 -824 1666 1462 1649 160 3 26 chr15 18731612 18731918 -66963836 - AluJo SINE Alu -3 309 11 337 320 120 39 chr15 18731918 18731954 -66963800 - L1MEd LINE L1 -1028 1462 1430 1601 174 33 10 chr15 18731954 18732253 -66963501 + AluJo SINE Alu 1 306 -6 337 320 120 39 chr15 18732253 18732611 -66963143 - L1MEd LINE L1 -1060 1430 908 268 203 58 0 chr15 18733201 18733270 -66962484 + MSTB1 LTR MaLR 24 96 -336 1651 84 0 4 chr15 18733401 18733628 -66962126 - AluY SINE Alu -85 226 1 1024 189 50 147 chr15 18733651 18734107 -66961647 + L1ME2 LINE L1 5726 6137 -27 302 117 67 17 chr15 18734697 18734757 -66960997 + MER5B DNA MER1_type 113 175 -3 313 170 38 0 chr15 18735030 18735083 -66960671 + Tigger5 DNA MER2_type 1 55 -2268 * 315 232 58 0 chr15 18735052 18735121 -66960633 + Tigger5 DNA MER2_type 2251 2323 0 411 253 50 10 chr15 18735762 18735861 -66959893 - MER91C DNA MER1_type -37 103 1 555 174 0 0 chr15 18736602 18736688 -66959066 - L2 LINE L2 -3 3310 3225 1407 203 33 12 chr15 18738619 18739028 -66956726 - MER66A LTR ERV1 0 478 27 2726 112 0 3 chr15 18739035 18739409 -66956345 - MER66A-int LTR ERV1 0 6676 6304 2962 138 6 4 chr15 18739439 18739938 -66955816 - L1 LINE L1 -2273 3873 3374 635 279 78 40 chr15 18739987 18740385 -66955369 - L1ME LINE L1 -468 5702 5290 302 117 67 17 chr15 18740753 18740813 -66954941 + MER5B DNA MER1_type 113 175 -3 313 170 38 0 chr15 18741086 18741139 -66954615 + Tigger5 DNA MER2_type 1 55 -2268 * 315 232 58 0 chr15 18741108 18741177 -66954577 + Tigger5 DNA MER2_type 2251 2323 0 411 253 50 10 chr15 18741818 18741917 -66953837 + MER91C DNA MER1_type 38 140 0 3178 94 11 0 chr15 18742130 18742565 -66953189 - LTR22A LTR ERVK -18 440 1 526 174 0 0 chr15 18743319 18743405 -66952349 - L2 LINE L2 -3 3310 3225 362 288 25 44 chr15 18745912 18746040 -66949714 + MIR SINE MIR 31 157 -105 2482 98 0 0 chr15 18746040 18746347 -66949407 + AluSc SINE Alu 1 307 -2 362 288 25 44 chr15 18746347 18746378 -66949376 + MIR SINE MIR 157 187 -75 288 305 46 110 chr15 18748075 18748403 -66947351 - L2 LINE L2 -5 3267 2961 329 255 0 29 chr15 18749951 18750053 -66945701 + MER5B DNA MER1_type 72 170 -8 808 229 78 5 chr15 18750960 18751054 -66944700 - MIR SINE MIR -16 246 160 2272 64 44 17 chr15 18751054 18751352 -66944402 + AluY SINE Alu 1 306 -5 808 229 78 5 chr15 18751352 18751475 -66944279 - MIR SINE MIR -102 160 13 769 198 4 110 chr15 18751539 18751776 -66943978 - MER20 DNA MER1_type -7 212 1 1334 199 54 51 chr15 18752291 18752663 -66943091 + MLT1B LTR MaLR 3 375 -15 635 217 126 14 chr15 18754905 18755112 -66940642 + MIR SINE MIR 14 243 -19 452 270 75 46 chr15 18755254 18755645 -66940109 + MLT1H LTR MaLR 26 549 0 288 322 0 11 chr15 18755649 18755739 -66940015 - L3 LINE CR1 -112 1465 1377 278 253 96 36 chr15 18756982 18757065 -66938689 - L2 LINE L2 -36 3277 3190 320 264 6 0 chr15 18758143 18758317 -66937437 + (CA)n Simple_repeat Simple_repeat 1 175 0 228 320 0 0 chr15 18758329 18758538 -66937216 + (CA)n Simple_repeat Simple_repeat 1 209 0 2532 55 0 3 chr15 18760221 18760550 -66935204 - L1PA6 LINE L1 -6 6148 5821 224 254 84 0 chr15 18760580 18760651 -66935103 - L2 LINE L2 -2 3270 3194 241 274 94 0 chr15 18761616 18761722 -66934032 + MER3 DNA MER1_type 1 116 -93 750 183 104 0 chr15 18766008 18766172 -66929582 - MER20 DNA MER1_type 0 219 39 271 271 93 17 chr15 18766229 18766347 -66929407 + MER94 DNA DNA 7 133 -1 483 253 213 15 chr15 18770835 18771037 -66924717 - MIR SINE MIR -1 261 20 375 239 57 25 chr15 18771040 18771060 -66924694 - L1MA10 LINE L1 0 6334 6315 715 216 165 17 chr15 18771060 18771296 -66924458 - L1ME2 LINE L1 -9 6155 5885 2250 125 3 0 chr15 18771681 18771986 -66923768 - AluSx SINE Alu -6 306 1 231 307 40 54 chr15 18772241 18772518 -66923236 + L1ME4a LINE L1 5814 6086 -35 330 224 12 0 chr15 18773131 18773216 -66922538 + L1ME3A LINE L1 6085 6170 0 1205 168 15 0 chr15 18773448 18773651 -66922103 + AluJo SINE Alu 84 289 -23 1676 160 75 14 chr15 18773884 18774177 -66921577 - AluJo SINE Alu -1 311 1 257 299 0 41 chr15 18774186 18774283 -66921471 + L1ME LINE L1 5714 5806 -315 1220 157 20 24 chr15 18774728 18774983 -66920771 - L1MB3 LINE L1 -10 6173 5920 1530 243 63 24 chr15 18775189 18775714 -66920040 + MLT1F LTR MaLR 32 542 0 356 194 0 0 chr15 18775986 18776048 -66919706 + LTR67 LTR ERVL 496 557 0 508 260 91 19 chr15 18776236 18776390 -66919364 - MIR SINE MIR 0 262 98 217 353 12 0 chr15 18777022 18777107 -66918647 - L2 LINE L2 -1 3312 3227 2513 81 0 0 chr15 18777108 18777415 -66918339 + AluY SINE Alu 1 307 -4 1076 151 25 5 chr15 18777512 18777711 -66918043 + L1MD3 LINE L1 7623 7825 -170 2283 100 3 3 chr15 18777834 18778124 -66917630 + AluSx SINE Alu 1 290 -22 2348 88 16 3 chr15 18778274 18778579 -66917175 + AluSc SINE Alu 1 309 0 26 74 0 0 chr15 18779491 18779545 -66916209 + AT_rich Low_complexity Low_complexity 1 54 0 26 30 0 0 chr15 18779691 18779724 -66916030 + AT_rich Low_complexity Low_complexity 1 33 0 2073 166 0 0 chr15 18780023 18780330 -66915424 + AluJb SINE Alu 1 307 -5 469 250 9 0 chr15 18780377 18780489 -66915265 + MARNA DNA Mariner 291 403 -183 21 0 0 0 chr15 18780776 18780797 -66914957 + AT_rich Low_complexity Low_complexity 1 21 0 2310 114 0 0 chr15 18780807 18781105 -66914649 - AluSx SINE Alu -12 300 3 211 350 125 8 chr15 18781157 18781277 -66914477 - MIR3 SINE MIR -65 143 10 1654 186 3 17 chr15 18781881 18782172 -66913582 + AluJo SINE Alu 21 307 -5 2380 57 3 27 chr15 18782428 18782800 -66912954 + AluY SINE Alu 1 311 0 1345 174 94 62 chr15 18782925 18783309 -66912445 + MSTD LTR MaLR 1 396 0 3760 132 22 55 chr15 18783941 18784708 -66911046 + L1MB2 LINE L1 5428 6169 -2 1779 155 3 30 chr15 18784850 18785146 -66910608 - AluJb SINE Alu -18 294 7 24 32 0 0 chr15 18785357 18785388 -66910366 + AT_rich Low_complexity Low_complexity 1 31 0 350 339 50 37 chr15 18785649 18785891 -66909863 - L2 LINE L2 0 3272 3028 1871 146 10 20 chr15 18786238 18786540 -66909214 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 18787193 18787216 -66908538 + (A)n Simple_repeat Simple_repeat 1 23 0 2730 199 46 52 chr15 18788047 18788319 -66907435 + L1ME1 LINE L1 5479 5751 -415 2364 79 7 16 chr15 18788319 18788623 -66907131 - AluY SINE Alu -10 301 1 2730 199 46 52 chr15 18788623 18789023 -66906731 + L1ME1 LINE L1 5751 6147 -19 1596 157 47 50 chr15 18789298 18789597 -66906157 + AluJo SINE Alu 1 298 -14 347 232 0 50 chr15 18789838 18789937 -66905817 + L1ME4a LINE L1 5975 6068 -53 23 0 0 0 chr15 18790532 18790555 -66905199 + AT_rich Low_complexity Low_complexity 1 23 0 2147 116 26 13 chr15 18791828 18792131 -66903623 + AluSx SINE Alu 1 307 -5 2173 133 3 3 chr15 18792587 18792889 -66902865 + AluSx SINE Alu 1 302 -10 2077 134 0 38 chr15 18792935 18793255 -66902499 - AluJo SINE Alu -4 308 1 338 296 273 23 chr15 18793662 18794058 -66901696 + L2 LINE L2 2819 3313 0 387 302 142 10 chr15 18795382 18795587 -66900167 - MIR SINE MIR -15 247 16 2180 117 0 3 chr15 18795892 18796219 -66899535 - AluSx SINE Alu 0 312 1 460 187 84 18 chr15 18796252 18796418 -66899336 - Charlie1a DNA MER1_type 0 1455 1279 3571 180 51 28 chr15 18796427 18797292 -66898462 - Charlie1a DNA MER1_type -316 1139 255 192 40 0 0 chr15 18797292 18797317 -66898437 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2170 125 0 28 chr15 18797319 18797639 -66898115 + AluSq SINE Alu 1 311 -2 1235 213 12 0 chr15 18797647 18797887 -66897867 + AluJo SINE Alu 60 302 -10 264 262 16 0 chr15 18797890 18797951 -66897803 - Charlie1a DNA MER1_type -1207 248 187 826 207 9 70 chr15 18797981 18798194 -66897560 - Charlie1a DNA MER1_type -1250 205 6 1380 148 14 9 chr15 18798295 18798512 -66897242 + AluJb SINE Alu 1 218 -94 300 120 0 0 chr15 18798513 18798563 -66897191 + AluJb SINE Alu 85 134 -168 9096 42 5 9 chr15 18798565 18800468 -66895286 + L1PA5 LINE L1 4248 6147 -7 1105 162 0 0 chr15 18800526 18800699 -66895055 + AluJb SINE Alu 120 292 -20 211 316 0 40 chr15 18801132 18801232 -66894522 - MIR SINE MIR -68 140 56 1656 155 61 0 chr15 18801502 18801766 -66893988 - AluJo SINE Alu -21 291 12 951 222 68 0 chr15 18801805 18802012 -66893742 + MER58A DNA MER1_type 1 221 -3 220 27 54 0 chr15 18803101 18803138 -66892616 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 33 90 0 0 chr15 18803404 18803493 -66892261 + AT_rich Low_complexity Low_complexity 1 89 0 3385 157 29 7 chr15 18803686 18804306 -66891448 + L1MB8 LINE L1 5488 6121 -57 1548 210 10 16 chr15 18804306 18804611 -66891143 - AluJb SINE Alu -9 303 1 947 212 22 0 chr15 18804642 18804826 -66890928 - MER5A DNA MER1_type -1 188 1 787 252 97 8 chr15 18805014 18805252 -66890502 - MIR SINE MIR -3 259 1 1663 126 0 40 chr15 18806226 18806322 -66889432 + AluSq SINE Alu 42 140 -173 2086 122 0 20 chr15 18806322 18806625 -66889129 + AluSx SINE Alu 1 297 -15 1663 126 0 40 chr15 18806625 18806806 -66888948 + AluSq SINE Alu 140 308 -5 388 324 21 28 chr15 18807347 18807489 -66888265 + MER5A DNA MER1_type 1 141 -48 2032 116 0 0 chr15 18807503 18807833 -66887921 + AluSx SINE Alu 1 330 0 286 258 0 0 chr15 18808119 18808181 -66887573 + MIR SINE MIR 84 145 -117 1959 292 66 19 chr15 18808250 18809258 -66886496 - L2 LINE L2 -2 3311 2256 251 339 69 15 chr15 18809846 18809976 -66885778 + L2 LINE L2 3133 3269 -3 250 284 251 33 chr15 18811626 18811841 -66883913 + MIR SINE MIR 1 262 0 737 173 54 43 chr15 18811901 18812086 -66883668 + MER5A DNA MER1_type 1 187 -2 789 214 94 20 chr15 18812097 18812298 -66883456 - MER20 DNA MER1_type -1 218 3 408 236 207 0 chr15 18812308 18812458 -66883296 - MER5A DNA MER1_type 0 189 4 26 50 0 0 chr15 18813654 18813694 -66882060 + AT_rich Low_complexity Low_complexity 1 40 0 247 329 0 0 chr15 18815023 18815093 -66880661 + MER5A DNA MER1_type 45 114 -75 25 65 0 0 chr15 18815323 18815369 -66880385 + AT_rich Low_complexity Low_complexity 1 46 0 1465 267 114 7 chr15 18815402 18815987 -66879767 - HAL1 LINE L1 -405 2102 1455 1255 260 53 75 chr15 18816040 18816673 -66879081 + L1MB1 LINE L1 764 1287 -5366 1110 243 3 10 chr15 18816870 18817162 -66878592 + L1MB1 LINE L1 1494 1783 -4870 1379 203 24 71 chr15 18817169 18817633 -66878121 + L1MB1 LINE L1 3949 4390 -2342 * 4698 159 26 23 chr15 18817611 18818079 -66877675 + L1MB1 LINE L1 5378 5843 -911 1934 144 32 12 chr15 18818079 18818355 -66877399 - MER7A DNA MER2_type -2692 346 62 1728 52 0 9 chr15 18818355 18818565 -66877189 + AluY SINE Alu 1 208 -103 1934 144 32 12 chr15 18818565 18818629 -66877125 - MER7A DNA MER2_type -2976 62 1 4698 159 26 23 chr15 18818629 18819535 -66876219 + L1MB1 LINE L1 5843 6752 -2 1997 148 20 0 chr15 18820084 18820389 -66875365 - AluJb SINE Alu -1 311 1 27 29 0 0 chr15 18821652 18821686 -66874068 + AT_rich Low_complexity Low_complexity 1 34 0 4241 148 29 4 chr15 18821687 18822662 -66873092 - L1MA8 LINE L1 -268 6023 5030 710 236 46 15 chr15 18823472 18823667 -66872087 + MIR SINE MIR 56 256 -6 1320 78 0 0 chr15 18823904 18824109 -66871645 - AluY SINE Alu 0 323 119 1100 135 53 0 chr15 18824114 18824284 -66871470 + AluJb SINE Alu 121 299 -13 344 264 80 8 chr15 18824286 18824411 -66871343 + HAL1 LINE L1 2341 2474 -33 2364 99 0 0 chr15 18824424 18824716 -66871038 + AluSp SINE Alu 1 292 -21 746 191 16 0 chr15 18825017 18825143 -66870611 + FLAM_A SINE Alu 1 128 -5 1817 160 10 24 chr15 18825190 18825483 -66870271 - AluJb SINE Alu -23 289 1 1999 131 24 3 chr15 18825488 18825785 -66869969 - AluSp SINE Alu -10 303 1 2285 94 0 3 chr15 18825990 18826288 -66869466 - AluSq SINE Alu -16 297 1 1828 177 0 0 chr15 18826539 18826833 -66868921 + AluJb SINE Alu 1 294 -18 703 192 16 35 chr15 18826859 18827171 -66868583 + MLT1A1 LTR MaLR 1 396 0 395 333 74 28 chr15 18827171 18827423 -66868331 + L1ME3A LINE L1 5368 5634 -528 650 214 78 89 chr15 18827523 18827780 -66867974 + MER77 LTR ERV1 130 383 -222 241 238 95 24 chr15 18827792 18827876 -66867878 + MER68 LTR ERV1 254 343 -219 454 219 19 0 chr15 18827964 18828069 -66867685 + MER77 LTR ERV1 499 605 0 315 276 45 37 chr15 18828069 18828236 -66867518 + L1ME3A LINE L1 5723 5889 -307 1880 124 14 21 chr15 18828973 18829263 -66866491 - AluSx SINE Alu -22 290 3 436 200 208 8 chr15 18829315 18829435 -66866319 + Tigger1 DNA MER2_type 1 144 -2274 2105 118 10 0 chr15 18829439 18829728 -66866026 - AluSx SINE Alu -20 292 1 949 165 65 15 chr15 18829750 18829950 -66865804 + Tigger1 DNA MER2_type 2209 2418 0 596 271 44 33 chr15 18829957 18830138 -66865616 - MIR3 SINE MIR -10 198 16 376 304 62 0 chr15 18830425 18830537 -66865217 - L2 LINE L2 0 3272 3154 1839 168 26 7 chr15 18832429 18832733 -66863021 - AluJb SINE Alu -2 310 1 1987 149 0 3 chr15 18833260 18833556 -66862198 - AluJb SINE Alu -17 295 1 23 0 0 0 chr15 18833962 18833985 -66861769 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 18834424 18834445 -66861309 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 18835102 18835133 -66860621 + AT_rich Low_complexity Low_complexity 1 31 0 680 204 99 7 chr15 18835655 18835807 -66859947 - FRAM SINE Alu 0 166 1 2310 65 0 31 chr15 18835905 18836196 -66859558 - AluY SINE Alu -13 298 17 462 271 44 17 chr15 18836994 18837175 -66858579 - L1MC5 LINE L1 -80 7881 7696 1668 131 23 65 chr15 18837206 18837512 -66858242 - AluJo SINE Alu -19 293 1 318 245 41 20 chr15 18837524 18837622 -66858132 - L1MC5 LINE L1 -262 7699 7600 322 301 125 0 chr15 18837817 18837953 -66857801 + L2 LINE L2 3161 3313 0 1829 228 189 23 chr15 18838075 18838461 -66857293 + L2 LINE L2 1748 2068 -1246 180 0 0 0 chr15 18838461 18838481 -66857273 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1963 133 7 3 chr15 18838483 18838768 -66856986 - AluSx SINE Alu -26 286 1 1829 228 189 23 chr15 18838768 18839080 -66856674 + L2 LINE L2 2068 2566 -748 570 225 191 65 chr15 18839077 18839370 -66856384 + L2 LINE L2 2967 3296 -17 * 375 270 74 18 chr15 18840449 18840612 -66855142 + MER104 DNA Tc2 1 172 -8 891 150 0 0 chr15 18841125 18841258 -66854496 - FLAM_C SINE Alu 0 133 1 210 118 0 0 chr15 18841436 18841470 -66854284 + (TG)n Simple_repeat Simple_repeat 1 34 0 236 133 22 0 chr15 18841519 18841564 -66854190 + AluSg/x SINE Alu 80 125 -175 710 165 8 8 chr15 18842429 18842550 -66853204 - FLAM_C SINE Alu -10 133 13 309 51 0 0 chr15 18842740 18842779 -66852975 + (TG)n Simple_repeat Simple_repeat 2 40 0 487 248 16 16 chr15 18842922 18843047 -66852707 - AluSq/x SINE Alu -188 125 1 300 357 18 0 chr15 18843158 18843270 -66852484 - MIR SINE MIR -55 153 40 742 220 13 0 chr15 18844657 18844807 -66850947 + MER58A DNA MER1_type 5 156 0 227 229 0 0 chr15 18844807 18844854 -66850900 + MER58A DNA MER1_type 178 224 0 202 413 58 0 chr15 18844865 18844986 -66850768 - L2 LINE L2 -12 3260 3133 700 242 28 28 chr15 18845230 18845441 -66850313 + AluSg/x SINE Alu 100 310 -2 365 180 11 0 chr15 18845856 18845945 -66849809 + GA-rich Low_complexity Low_complexity 1 90 0 517 316 18 53 chr15 18845972 18846311 -66849443 + L1M4 LINE L1 3798 4124 -2022 2262 82 0 7 chr15 18846332 18846674 -66849080 + AluY SINE Alu 1 311 0 206 291 12 70 chr15 18846710 18846796 -66848958 - L2 LINE L2 -655 2659 2579 2255 81 16 26 chr15 18846860 18847167 -66848587 - AluSp SINE Alu -9 304 1 261 174 0 130 chr15 18848835 18848876 -66846878 - MIR SINE MIR -30 232 208 2149 109 3 26 chr15 18848876 18849187 -66846567 - AluSx SINE Alu -8 304 1 261 174 0 130 chr15 18849187 18849237 -66846517 - MIR SINE MIR -54 208 153 1380 222 78 1 chr15 18849242 18849587 -66846167 - L1MB5 LINE L1 -1 6173 5804 389 88 0 29 chr15 18849662 18849730 -66846024 - L1PA6 LINE L1 -10 6144 6079 36126 79 18 7 chr15 18849984 18855872 -66839882 - L1PA6 LINE L1 -195 5959 11 267 203 0 0 chr15 18855883 18855947 -66839807 - L1MB5 LINE L1 -350 5824 5761 1813 282 77 41 chr15 18855990 18857367 -66838387 - L1M4c LINE L1 -5024 1622 5 365 266 125 23 chr15 18857373 18857501 -66838253 - MIR SINE MIR -111 151 11 180 111 0 0 chr15 18857539 18857566 -66838188 + (T)n Simple_repeat Simple_repeat 1 27 0 4041 146 30 20 chr15 18857795 18858459 -66837295 + L1MC1 LINE L1 5588 6261 -72 1550 195 13 27 chr15 18858459 18858631 -66837123 - AluJb SINE Alu -12 300 132 2113 125 7 0 chr15 18858631 18858926 -66836828 - AluSp SINE Alu -16 297 1 1550 195 13 27 chr15 18858926 18859051 -66836703 - AluJb SINE Alu -180 132 7 4041 146 30 20 chr15 18859051 18859119 -66836635 + L1MC1 LINE L1 6261 6327 -6 2139 123 0 32 chr15 18859264 18859574 -66836180 - AluSx SINE Alu -12 300 1 1616 193 4 4 chr15 18859641 18859911 -66835843 - AluSx SINE Alu -18 294 25 1562 192 23 7 chr15 18860210 18860512 -66835242 - AluJb SINE Alu -5 307 1 1920 170 43 38 chr15 18860632 18861049 -66834705 + MSTB1 LTR MaLR 1 419 -13 404 279 92 9 chr15 18861094 18861334 -66834420 + L1ME LINE L1 5592 5848 -303 362 299 93 52 chr15 18861509 18861777 -66833977 + L1ME4a LINE L1 5662 5940 -181 2047 151 7 0 chr15 18861924 18862222 -66833532 - AluSq SINE Alu -13 300 1 2510 211 50 73 chr15 18862335 18862639 -66833115 + L1M4 LINE L1 16 325 -6217 1809 119 0 4 chr15 18862639 18862883 -66832871 - AluSx SINE Alu -33 279 37 2510 211 50 73 chr15 18862883 18863331 -66832423 + L1M4 LINE L1 325 751 -5791 1037 179 60 63 chr15 18863330 18863586 -66832168 + L1MB7 LINE L1 5876 6132 -52 * 1645 195 10 7 chr15 18863586 18863883 -66831871 + AluJb SINE Alu 1 298 -14 1037 179 60 63 chr15 18863883 18863928 -66831826 + L1MB7 LINE L1 6132 6176 -8 432 141 165 16 chr15 18864220 18864341 -66831413 - L1ME4a LINE L1 -9 6112 5974 25 0 0 0 chr15 18864506 18864531 -66831223 + AT_rich Low_complexity Low_complexity 1 25 0 232 211 193 0 chr15 18865031 18865088 -66830666 - MIR3 SINE MIR -28 180 113 2441 70 0 3 chr15 18865130 18865429 -66830325 - AluY SINE Alu -13 298 1 2039 90 83 0 chr15 18865934 18866212 -66829542 - AluSq SINE Alu -12 301 1 2312 137 25 23 chr15 18866644 18866958 -66828796 + L1MB4 LINE L1 5743 6060 -120 1768 191 0 10 chr15 18866958 18867256 -66828498 + AluSx SINE Alu 1 295 -17 2312 137 25 23 chr15 18867256 18867378 -66828376 + L1MB4 LINE L1 6060 6180 0 204 125 0 0 chr15 18868163 18868195 -66827559 + (TA)n Simple_repeat Simple_repeat 1 32 0 5624 108 58 27 chr15 18868195 18869645 -66826109 - L1PA13 LINE L1 -1 6162 4694 2343 102 0 0 chr15 18869729 18870024 -66825730 + AluSx SINE Alu 1 295 -17 4568 199 99 18 chr15 18870024 18871300 -66824454 + Charlie1a DNA MER1_type 76 1455 0 219 280 40 13 chr15 18871364 18871439 -66824315 + MIR3 SINE MIR 125 201 -7 1875 132 14 11 chr15 18871881 18872196 -66823558 + AluJo SINE Alu 1 316 0 2861 13 0 0 chr15 18873150 18873461 -66822293 + AluYb8 SINE Alu 1 311 -7 2200 105 3 3 chr15 18873583 18873888 -66821866 + AluSx SINE Alu 1 305 -7 1142 130 0 0 chr15 18873945 18874099 -66821655 + AluSg/x SINE Alu 135 288 -22 248 254 202 9 chr15 18874357 18874471 -66821283 + L2 LINE L2 3177 3312 -1 1580 154 84 0 chr15 18874930 18875228 -66820526 + MER7A DNA MER2_type 1 321 -25 226 174 29 29 chr15 18875275 18875344 -66820410 + (TA)n Simple_repeat Simple_repeat 1 69 0 285 292 117 8 chr15 18877322 18877442 -66818312 + L3 LINE CR1 1428 1560 -17 730 143 364 18 chr15 18878188 18878405 -66817349 + AluJo SINE Alu 1 292 -20 24 0 0 29 chr15 18878580 18878591 -66817163 + AT_rich Low_complexity Low_complexity 1 11 -23 1660 156 10 10 chr15 18878591 18878879 -66816875 + AluJb SINE Alu 3 290 -22 24 0 0 29 chr15 18878879 18878902 -66816852 + AT_rich Low_complexity Low_complexity 11 34 0 1269 263 84 23 chr15 18880222 18880746 -66815008 - L1MC4a LINE L1 -1736 6072 5517 2274 115 0 6 chr15 18880746 18881060 -66814694 + AluSx SINE Alu 1 312 0 799 154 13 47 chr15 18881060 18881209 -66814545 + AluJo/FRAM SINE Alu 134 277 -35 22 0 0 0 chr15 18881210 18881232 -66814522 + AT_rich Low_complexity Low_complexity 1 22 0 264 273 0 0 chr15 18881423 18881478 -66814276 + (CA)n Simple_repeat Simple_repeat 2 56 0 936 120 66 11 chr15 18881512 18881695 -66814059 - AluSg/x SINE Alu -18 292 100 1750 87 0 5 chr15 18881797 18882016 -66813738 - AluSx SINE Alu -94 218 1 198 0 0 0 chr15 18882030 18882052 -66813702 + (A)n Simple_repeat Simple_repeat 1 22 0 2006 141 0 3 chr15 18882837 18883135 -66812619 + AluJb SINE Alu 12 308 -4 472 271 65 32 chr15 18883205 18883360 -66812394 - MIR SINE MIR -29 233 74 1869 147 18 3 chr15 18885516 18885802 -66809952 + AluSx SINE Alu 1 290 -22 357 315 8 16 chr15 18885807 18885934 -66809820 + L1 LINE L1 3661 3786 -2360 1021 119 0 0 chr15 18886019 18886153 -66809601 + AluSq/x SINE Alu 1 134 -179 2201 99 3 7 chr15 18886155 18886447 -66809307 + AluSg SINE Alu 1 291 -19 1538 203 17 31 chr15 18886865 18887225 -66808529 - MLT1A2 LTR MaLR -16 358 4 862 206 0 25 chr15 18888759 18888919 -66806835 - FAM SINE Alu -20 165 10 24 32 0 0 chr15 18889173 18889204 -66806550 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr15 18889518 18889544 -66806210 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2159 126 0 10 chr15 18889639 18889941 -66805813 + AluSx SINE Alu 6 304 -8 376 246 76 0 chr15 18891472 18891590 -66804164 - MER94 DNA DNA -4 130 4 335 43 0 0 chr15 18892055 18892102 -66803652 + MADE1 DNA Mariner 1 47 -33 679 199 0 15 chr15 18892934 18893065 -66802689 - FLAM_C SINE Alu -4 129 1 307 306 12 0 chr15 18893195 18893280 -66802474 - L1 LINE L1 -2412 3734 3649 247 254 32 16 chr15 18893390 18893453 -66802301 + LTR67 LTR ERVL 114 177 -380 355 291 35 35 chr15 18893668 18893840 -66801914 + LTR67 LTR ERVL 384 555 -2 2312 151 5 10 chr15 18893968 18894358 -66801396 + MLT1B LTR MaLR 1 388 -2 1785 197 0 0 chr15 18894767 18895061 -66800693 + AluJo SINE Alu 1 294 -18 715 334 57 45 chr15 18895191 18896111 -66799643 + ERVL LTR ERVL 790 1696 -3958 474 300 63 41 chr15 18896238 18896508 -66799246 + ERVL LTR ERVL 1904 2179 -3585 617 319 42 42 chr15 18896595 18896855 -66798899 - MIR SINE MIR -1 261 2 226 223 117 11 chr15 18897802 18897896 -66797858 - L1ME4a LINE L1 -4 6117 6014 1838 154 20 10 chr15 18898013 18898311 -66797443 + AluJb SINE Alu 1 301 -11 2350 106 0 3 chr15 18898533 18898835 -66796919 + AluSx SINE Alu 1 301 -11 729 258 120 27 chr15 18898894 18899214 -66796540 - L1MC4a LINE L1 -1853 5955 5595 2301 86 3 13 chr15 18899214 18899515 -66796239 - AluY SINE Alu -13 298 1 729 258 120 27 chr15 18899515 18899562 -66796192 - L1MC4a LINE L1 -2213 5595 5554 22 0 0 0 chr15 18899587 18899609 -66796145 + AT_rich Low_complexity Low_complexity 1 22 0 391 299 134 31 chr15 18899609 18899870 -66795884 + L1MB3 LINE L1 4914 5201 -945 441 0 0 0 chr15 18899881 18899930 -66795824 + (CA)n Simple_repeat Simple_repeat 2 50 0 522 145 0 0 chr15 18899951 18900034 -66795720 + L1MCa LINE L1 17 99 -6327 236 244 23 93 chr15 18900034 18900101 -66795653 - L1M4 LINE L1 -3649 2497 2427 1392 211 16 20 chr15 18900101 18900404 -66795350 + AluSq SINE Alu 1 302 -11 236 244 23 93 chr15 18900404 18900508 -66795246 - L1M4 LINE L1 -3719 2427 2338 1552 168 34 14 chr15 18900645 18900936 -66794818 + AluSq SINE Alu 5 301 -12 477 237 7 7 chr15 18900937 18901089 -66794665 - L1M4 LINE L1 -3705 2441 2290 207 100 0 0 chr15 18901138 18901168 -66794586 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 2186 100 0 21 chr15 18901175 18901466 -66794288 - AluSq SINE Alu -26 287 3 216 97 0 0 chr15 18901610 18901641 -66794113 + (T)n Simple_repeat Simple_repeat 1 31 0 252 340 41 10 chr15 18901669 18901863 -66793891 + L1MB3 LINE L1 5372 5571 -2237 21 57 0 0 chr15 18901976 18902011 -66793743 + AT_rich Low_complexity Low_complexity 1 35 0 814 180 0 0 chr15 18902108 18902236 -66793518 - FLAM_A SINE Alu -4 129 2 357 24 0 0 chr15 18902596 18902638 -66793116 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 662 348 19 75 chr15 18902641 18903109 -66792645 - L2 LINE L2 -12 3260 2819 360 266 44 18 chr15 18903139 18903252 -66792502 - L2 LINE L2 -5 3308 3193 246 346 19 9 chr15 18903277 18903384 -66792370 - L2 LINE L2 -541 2773 2666 4490 105 9 12 chr15 18903440 18904182 -66791572 - L1P LINE L1 -1594 4552 3813 2479 69 12 0 chr15 18904322 18904655 -66791099 + L1PA8A LINE L1 5445 5781 -350 2269 119 6 0 chr15 18904655 18904966 -66790788 + AluSp SINE Alu 1 313 0 11875 136 64 49 chr15 18904977 18908043 -66787711 + L1P3 LINE L1 2 3338 -3123 6344 99 23 12 chr15 18908028 18909245 -66786509 + L1P3 LINE L1 4717 5930 -539 * 543 204 7 23 chr15 18909674 18909829 -66785925 + L1MB3 LINE L1 5830 5983 -185 4958 52 8 0 chr15 18909829 18910468 -66785286 + L1PA7 LINE L1 5432 6075 -79 1420 94 0 0 chr15 18910472 18910653 -66785101 - AluSg/x SINE Alu -16 296 116 658 72 0 54 chr15 18910657 18910768 -66784986 + L1MB3 LINE L1 6077 6181 -2 1027 173 0 0 chr15 18911745 18911913 -66783841 - FRAM SINE Alu -8 168 1 2176 114 0 10 chr15 18912903 18913200 -66782554 - AluSg SINE Alu -16 294 1 1632 168 3 7 chr15 18913738 18914024 -66781730 - AluSc SINE Alu -15 294 10 1995 146 3 3 chr15 18914227 18914522 -66781232 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr15 18914713 18914739 -66781015 + AT_rich Low_complexity Low_complexity 1 26 0 2544 197 41 18 chr15 18915694 18915949 -66779805 + L1M4 LINE L1 4044 4292 -1854 2265 121 131 8 chr15 18915949 18916330 -66779424 - MSTA LTR MaLR 0 428 1 2544 197 41 18 chr15 18916330 18916738 -66779016 + L1M4 LINE L1 4292 4722 -1424 1119 110 93 0 chr15 18916744 18916926 -66778828 + THE1B LTR MaLR 3 201 -163 757 126 92 0 chr15 18917067 18917186 -66778568 + AluSx SINE Alu 1 130 -183 580 269 6 6 chr15 18917262 18917437 -66778317 + AluSx SINE Alu 117 291 -21 921 212 54 63 chr15 18917977 18918312 -66777442 + THE1B LTR MaLR 20 351 -13 1281 194 47 140 chr15 18918330 18918379 -66777375 + L1M4 LINE L1 4730 4782 -1364 2116 106 17 17 chr15 18918379 18918680 -66777074 + AluSx SINE Alu 3 303 -9 1281 194 47 140 chr15 18918680 18919264 -66776490 + L1M4 LINE L1 4782 5304 -842 344 278 12 124 chr15 18919506 18919698 -66776056 + AluJb SINE Alu 137 309 0 21 36 0 0 chr15 18920563 18920591 -66775163 + AT_rich Low_complexity Low_complexity 1 28 0 1834 147 28 17 chr15 18920978 18921338 -66774416 + L1MB4 LINE L1 5263 5626 -548 2015 147 35 0 chr15 18921338 18921684 -66774070 + MLT2D LTR ERVL 1 358 -56 245 128 21 0 chr15 18921735 18921782 -66773972 + MLT2D LTR ERVL 464 511 -9 2568 167 51 13 chr15 18921809 18921908 -66773846 + L1MB4 LINE L1 5621 5715 -465 3712 188 46 43 chr15 18921908 18922859 -66772895 - LTR13 LTR ERVK 0 954 1 2568 167 51 13 chr15 18922859 18923293 -66772461 + L1MB4 LINE L1 5715 6174 -6 354 121 72 60 chr15 18923312 18923395 -66772359 + L1MB8 LINE L1 6093 6176 -2 362 262 106 55 chr15 18923791 18924066 -66771688 - HAL1 LINE L1 -581 1926 1638 988 113 102 6 chr15 18924225 18924402 -66771352 - MER46A DNA MER2_type 0 236 43 912 169 32 87 chr15 18924740 18924959 -66770795 + AluSg/x SINE Alu 85 291 -21 401 145 0 0 chr15 18924978 18925040 -66770714 - MER46A DNA MER2_type -173 63 2 2182 109 0 0 chr15 18925230 18925513 -66770241 - AluSx SINE Alu -26 286 4 386 276 52 11 chr15 18925653 18925827 -66769927 - HAL1 LINE L1 -2298 209 29 560 363 76 49 chr15 18925908 18926505 -66769249 + L2 LINE L2 2660 3270 -2 1649 226 26 19 chr15 18927035 18927451 -66768303 - LTR52 LTR ERVL -2 419 1 530 326 78 12 chr15 18927796 18928038 -66767716 - MIR SINE MIR -3 259 2 2067 150 0 6 chr15 18928258 18928571 -66767183 - AluSx SINE Alu -1 311 1 4949 151 11 27 chr15 18928781 18929746 -66766008 + L1MB2 LINE L1 5226 6170 -1 2377 83 0 29 chr15 18929750 18930063 -66765691 + AluSx SINE Alu 1 304 -8 1948 170 0 3 chr15 18930514 18930826 -66764928 - AluJb SINE Alu -1 311 1 207 0 0 0 chr15 18930911 18930934 -66764820 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 18932493 18932515 -66763239 + AT_rich Low_complexity Low_complexity 1 22 0 874 282 15 23 chr15 18932702 18932961 -66762793 - MIR SINE MIR -1 261 5 746 197 21 0 chr15 18933034 18933176 -66762578 + MER58B DNA MER1_type 197 341 0 417 289 164 50 chr15 18933261 18933579 -66762175 + L3 LINE CR1 1216 1569 -8 530 273 10 68 chr15 18933826 18934031 -66761723 - L2 LINE L2 0 3313 3121 333 292 117 13 chr15 18934973 18935127 -66760627 + MIR SINE MIR 93 262 0 2021 138 0 40 chr15 18935540 18935865 -66759889 - AluJb SINE Alu 0 312 1 248 281 43 43 chr15 18936415 18936554 -66759200 + L1ME LINE L1 5676 5814 -307 24 32 0 0 chr15 18936558 18936589 -66759165 + AT_rich Low_complexity Low_complexity 1 31 0 884 213 51 4 chr15 18936689 18936924 -66758830 - L1MA4 LINE L1 -5 6295 6050 324 124 180 11 chr15 18937014 18937103 -66758651 + L1ME4a LINE L1 6018 6121 0 2151 93 7 14 chr15 18937498 18937788 -66757966 + AluSq SINE Alu 1 288 -25 180 0 0 0 chr15 18937788 18937808 -66757946 + (TA)n Simple_repeat Simple_repeat 2 21 0 1961 143 7 3 chr15 18937823 18938110 -66757644 + AluSx SINE Alu 9 296 -16 877 315 8 0 chr15 18938319 18938560 -66757194 + MIR SINE MIR 20 262 0 1837 197 18 59 chr15 18938660 18938934 -66756820 + L1M4 LINE L1 4787 5028 -1118 2191 125 0 0 chr15 18938934 18939229 -66756525 - AluSx SINE Alu -17 295 1 1837 197 18 59 chr15 18939229 18939517 -66756237 + L1M4 LINE L1 5028 5326 -820 * 10810 147 27 38 chr15 18939508 18942487 -66753267 + L1PA14 LINE L1 3196 6143 -18 239 184 0 0 chr15 18942497 18942546 -66753208 + L1M LINE L1 5320 5368 -934 2012 131 3 10 chr15 18942548 18942845 -66752909 + AluSx SINE Alu 1 295 -17 477 0 0 0 chr15 18944074 18944127 -66751627 + (CA)n Simple_repeat Simple_repeat 2 54 0 244 126 0 0 chr15 18945100 18945140 -66750614 + Alu SINE Alu 1 34 -266 956 97 0 8 chr15 18945242 18945366 -66750388 - AluSg1 SINE Alu -186 123 1 2023 145 3 3 chr15 18945870 18946166 -66749588 - AluSx SINE Alu -16 296 1 565 298 40 13 chr15 18946364 18946515 -66749239 + L2 LINE L2 3116 3270 -2 1682 181 10 29 chr15 18946604 18946918 -66748836 + AluJo SINE Alu 1 308 -4 1571 205 142 21 chr15 18948448 18948878 -66746876 - MLT1D LTR MaLR -4 501 20 467 294 0 8 chr15 18949718 18949837 -66745917 + L2 LINE L2 3151 3268 -4 22 35 0 0 chr15 18949924 18949953 -66745801 + AT_rich Low_complexity Low_complexity 1 29 0 1445 211 21 40 chr15 18950177 18950551 -66745203 - MLT1A2 LTR MaLR -4 370 4 1054 158 29 49 chr15 18950593 18950839 -66744915 + L1MB8 LINE L1 5935 6175 -3 450 279 44 7 chr15 18951275 18951411 -66744343 - MIR3 SINE MIR -21 187 47 22 35 0 0 chr15 18952318 18952347 -66743407 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 18953248 18953274 -66742480 + AT_rich Low_complexity Low_complexity 1 26 0 2418 98 0 16 chr15 18953934 18954250 -66741504 - AluSx SINE Alu 0 312 2 2518 69 3 0 chr15 18954326 18954629 -66741125 - AluSp SINE Alu -5 308 5 2428 79 0 10 chr15 18954855 18955158 -66740596 - AluSq SINE Alu -12 301 2 2009 138 0 0 chr15 18955168 18955473 -66740281 - AluSx SINE Alu 0 307 3 1441 134 4 13 chr15 18957195 18957427 -66738327 + MER96B DNA MER1_type? 1 230 -187 34 0 0 0 chr15 18958792 18958826 -66736928 + AT_rich Low_complexity Low_complexity 1 34 0 735 164 0 0 chr15 18958829 18958939 -66736815 - FLAM_C SINE Alu -32 111 2 2043 119 0 0 chr15 18959501 18959778 -66735976 - AluSx SINE Alu -2 310 34 329 244 23 12 chr15 18959939 18960025 -66735729 + MIR SINE MIR 35 121 -87 2177 110 3 3 chr15 18960052 18960344 -66735410 + AluSx SINE Alu 3 294 -18 1561 204 16 3 chr15 18960482 18960796 -66734958 + L1MD3 LINE L1 7398 7715 -280 320 116 29 14 chr15 18960803 18960872 -66734882 + L1MD3 LINE L1 7924 7993 -2 525 302 35 30 chr15 18961983 18962215 -66733539 - MIR SINE MIR -2 260 28 673 166 150 32 chr15 18962714 18962901 -66732853 + MER6B DNA MER2_type 1 209 -1 2167 115 0 3 chr15 18962915 18963211 -66732543 - AluSx SINE Alu -16 296 2 187 319 118 52 chr15 18964941 18965076 -66730678 - MIR3 SINE MIR -12 196 53 412 229 18 9 chr15 18965192 18965301 -66730453 - L2 LINE L2 -5 3308 3199 1681 159 3 24 chr15 18965487 18965799 -66729955 + AluJb SINE Alu 1 306 0 888 134 0 28 chr15 18966435 18966577 -66729177 + FLAM_C SINE Alu 1 138 -5 324 322 68 0 chr15 18966934 18967052 -66728702 - MIR3 SINE MIR 0 208 83 961 247 31 0 chr15 18967993 18968220 -66727534 - MIR SINE MIR -1 261 28 692 264 47 35 chr15 18968452 18968706 -66727048 + MIR SINE MIR 6 262 0 294 178 0 0 chr15 18970323 18970368 -66725386 - HsTC2 DNA Tc2 -612 1286 1242 258 307 0 0 chr15 18970366 18970441 -66725313 - HsTC2 DNA Tc2 -1780 118 44 * 2121 132 7 0 chr15 18971125 18971435 -66724319 - AluSx SINE Alu 0 312 1 309 346 56 26 chr15 18971889 18972123 -66723631 - L3b LINE CR1 -84 1499 1259 671 141 8 41 chr15 18972123 18972244 -66723510 - FLAM_A SINE Alu -6 136 20 3088 184 58 39 chr15 18972370 18973010 -66722744 - MER82 DNA MER2_type 0 653 2 1960 153 7 19 chr15 18973073 18973243 -66722511 + AluJb SINE Alu 1 167 -145 3190 56 99 7 chr15 18973243 18973688 -66722066 - LTR19A LTR ERV1 0 486 1 1960 153 7 19 chr15 18973688 18973825 -66721929 + AluJb SINE Alu 167 304 -8 846 219 32 14 chr15 18973852 18974071 -66721683 - L1MC4 LINE L1 -1013 7029 6807 2375 102 0 3 chr15 18974162 18974476 -66721278 - AluSq SINE Alu 0 313 1 604 225 14 7 chr15 18974598 18974736 -66721018 + MIR SINE MIR 43 181 -81 288 310 108 13 chr15 18975027 18975185 -66720569 + MIR SINE MIR 9 181 -81 637 242 39 22 chr15 18975307 18975485 -66720269 + MIR SINE MIR 21 201 -61 522 231 40 67 chr15 18975830 18976084 -66719670 - L1M LINE L1 -747 5423 5175 2243 109 0 25 chr15 18976086 18976406 -66719348 + AluSx SINE Alu 1 312 0 411 228 132 9 chr15 18976413 18976567 -66719187 - L1MEc LINE L1 -1537 4889 4718 882 146 0 0 chr15 18976568 18976698 -66719056 - AluSp/q SINE Alu -17 296 167 317 137 20 0 chr15 18977408 18977459 -66718295 - Alu SINE Alu -250 52 1 2261 98 0 0 chr15 18977574 18977861 -66717893 + AluSx SINE Alu 9 295 -17 2106 125 0 14 chr15 18977907 18978218 -66717536 + AluSx SINE Alu 1 307 0 491 249 85 28 chr15 18978220 18978397 -66717357 - MER5A DNA MER1_type 0 189 3 1599 158 32 45 chr15 18979795 18979987 -66715767 - AluJo SINE Alu -6 306 118 450 0 0 0 chr15 18979987 18980037 -66715717 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1599 158 32 45 chr15 18980037 18980154 -66715600 - AluJo SINE Alu -194 118 1 381 216 62 21 chr15 18980555 18980652 -66715102 + Charlie7 DNA MER1_type 1 101 -2511 4814 138 102 111 chr15 18980654 18981234 -66714520 - L1MC3 LINE L1 -7 7778 7194 283 253 24 24 chr15 18981234 18981317 -66714437 - MLT1F1 LTR MaLR -443 124 42 4814 138 102 111 chr15 18981317 18981898 -66713856 - L1MC3 LINE L1 -591 7194 6546 7760 227 34 29 chr15 18981925 18983012 -66712742 - L1MEc LINE L1 -1751 4675 3595 2194 185 74 15 chr15 18983012 18983487 -66712267 - LTR22 LTR ERVK -4 505 3 7760 227 34 29 chr15 18983487 18984033 -66711721 - L1MEc LINE L1 -2831 3595 3053 2260 107 3 0 chr15 18984033 18984323 -66711431 + AluSg SINE Alu 2 292 -18 7760 227 34 29 chr15 18984323 18984835 -66710919 - L1MEc LINE L1 -3373 3053 2555 1951 125 60 0 chr15 18984835 18985116 -66710638 + AluSq SINE Alu 1 298 -15 7760 227 34 29 chr15 18985116 18985352 -66710402 - L1MEc LINE L1 -3871 2555 2322 1208 142 0 16 chr15 18985369 18985559 -66710195 - AluJ SINE Alu -1 311 125 399 211 0 0 chr15 18985560 18985650 -66710104 + (TATG)n Simple_repeat Simple_repeat 1 90 0 216 0 0 0 chr15 18985729 18985753 -66710001 + (TA)n Simple_repeat Simple_repeat 2 25 0 907 150 0 0 chr15 18985758 18985891 -66709863 - AluJ SINE Alu -169 133 1 1510 194 148 18 chr15 18985891 18986345 -66709409 - L1MEc LINE L1 -4145 2281 1769 2274 106 3 0 chr15 18986545 18986838 -66708916 - AluSg SINE Alu -16 294 1 892 259 42 63 chr15 18986914 18987339 -66708415 - HAL1b LINE L1 -709 639 224 2052 160 0 0 chr15 18987361 18987667 -66708087 - AluJb SINE Alu -4 308 3 337 248 139 84 chr15 18987837 18988075 -66707679 - L1MC4a LINE L1 -1571 6237 5987 1917 106 12 84 chr15 18988307 18988627 -66707127 + AluSx SINE Alu 1 297 -15 200 29 0 59 chr15 18988646 18988680 -66707074 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1561 84 31 0 chr15 18988682 18988873 -66706881 - AluSq SINE Alu -116 197 1 532 189 27 9 chr15 18988962 18989073 -66706681 + MIR SINE MIR 59 171 -91 2313 87 0 0 chr15 18989132 18989418 -66706336 + AluSc SINE Alu 1 286 -23 192 77 0 0 chr15 18989418 18989444 -66706310 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 303 28 0 0 chr15 18990532 18990568 -66705186 + (GA)n Simple_repeat Simple_repeat 2 37 0 211 296 70 0 chr15 18990849 18990920 -66704834 + L3b LINE CR1 1282 1357 -226 253 240 53 0 chr15 18992366 18992441 -66703313 + MER5B DNA MER1_type 4 82 -96 197 347 65 16 chr15 18992474 18992598 -66703156 - L2 LINE L2 -15 3257 3128 1878 146 0 17 chr15 18993307 18993602 -66702152 - AluJb SINE Alu -17 295 6 325 235 80 53 chr15 18993651 18993820 -66701934 + MIR SINE MIR 16 187 -58 240 316 22 15 chr15 18994782 18994918 -66700836 + CT-rich Low_complexity Low_complexity 1 137 0 277 140 18 0 chr15 18995417 18995474 -66700280 - L2 LINE L2 0 3313 3256 1096 251 70 48 chr15 18995562 18995775 -66699979 - L1ME4a LINE L1 -18 6103 5896 2122 129 0 19 chr15 18995775 18996093 -66699661 - AluSx SINE Alu 0 312 1 1096 251 70 48 chr15 18996093 18996362 -66699392 - L1ME4a LINE L1 -225 5896 5610 2441 70 0 3 chr15 18996882 18997195 -66698559 + AluSx SINE Alu 1 312 0 1385 187 111 16 chr15 18998063 18998378 -66697376 + MER2 DNA MER2_type 1 345 0 2334 87 0 3 chr15 18998584 18998893 -66696861 - AluSg SINE Alu -2 308 1 287 289 10 39 chr15 18999636 18999740 -66696014 + MIR SINE MIR 92 192 -70 341 256 13 0 chr15 19000129 19000207 -66695547 - L2 LINE L2 -2 3311 3233 387 272 59 94 chr15 19000316 19000570 -66695184 - L2 LINE L2 -19 3253 3009 585 312 50 10 chr15 19001039 19001241 -66694513 - MIR SINE MIR -25 237 28 2258 79 3 0 chr15 19001242 19001533 -66694221 - AluSg SINE Alu -11 299 8 1448 107 4 22 chr15 19002121 19002346 -66693408 + AluSc SINE Alu 76 296 -13 22 35 0 0 chr15 19002385 19002414 -66693340 + AT_rich Low_complexity Low_complexity 1 29 0 611 122 11 0 chr15 19002420 19002510 -66693244 - FLAM_C SINE Alu -25 118 28 1264 144 10 0 chr15 19002514 19002716 -66693038 + AluJo SINE Alu 88 291 -21 267 170 24 0 chr15 19002716 19002763 -66692991 - Alu SINE Alu -263 37 1 1012 107 6 13 chr15 19002828 19002987 -66692767 - L1MA4 LINE L1 -27 6273 6116 2074 115 3 0 chr15 19002989 19003276 -66692478 + AluSx SINE Alu 1 288 -24 560 110 0 11 chr15 19003277 19003368 -66692386 + (CA)n Simple_repeat Simple_repeat 2 91 0 1208 138 11 77 chr15 19003410 19003468 -66692286 - L1MA4 LINE L1 -179 6121 6061 2155 120 0 0 chr15 19003468 19003768 -66691986 - AluSx SINE Alu -8 304 5 1208 138 11 77 chr15 19003768 19003969 -66691785 - L1MA4 LINE L1 -239 6061 5879 2297 139 11 0 chr15 19004548 19004907 -66690847 - MER47A DNA MER2_type 0 366 4 279 385 8 0 chr15 19004926 19005043 -66690711 - L2 LINE L2 -658 2656 2539 800 152 4 2 chr15 19005140 19005400 -66690354 + AluJb SINE Alu 4 309 -3 238 217 72 24 chr15 19005446 19005529 -66690225 - L2 LINE L2 -943 2371 2285 2178 102 0 0 chr15 19005599 19005893 -66689861 + AluSx SINE Alu 1 294 -18 268 336 35 35 chr15 19005895 19006121 -66689633 - L2 LINE L2 -1049 2265 2040 959 204 33 41 chr15 19007893 19008163 -66687591 - L2 LINE L2 0 3313 3046 549 261 121 19 chr15 19008880 19009088 -66686666 + MIR SINE MIR 15 244 -18 465 339 17 7 chr15 19009129 19009328 -66686426 - MIR SINE MIR -56 206 5 2109 101 0 3 chr15 19010045 19010365 -66685389 - AluSq SINE Alu 0 319 1 433 294 75 25 chr15 19010555 19010715 -66685039 - MIR SINE MIR -82 180 13 351 257 95 20 chr15 19011267 19011366 -66684388 - MIR SINE MIR -56 206 91 2107 98 7 3 chr15 19011366 19011661 -66684093 - AluY SINE Alu -15 296 1 351 257 95 20 chr15 19011661 19011709 -66684045 - MIR SINE MIR -171 91 48 210 266 97 0 chr15 19012047 19012115 -66683639 - MIR SINE MIR -95 113 47 2137 124 0 0 chr15 19019155 19019454 -66676300 - AluSq SINE Alu -14 299 1 2234 65 24 0 chr15 19019772 19020064 -66675690 - AluSx SINE Alu -13 299 1 1310 196 3 81 chr15 19022390 19022712 -66673042 - AluSq SINE Alu -2 301 5 1559 148 0 77 chr15 19022980 19023102 -66672652 + AluJb SINE Alu 22 152 -160 1989 112 34 0 chr15 19023102 19023397 -66672357 + AluSx SINE Alu 1 305 -7 1559 148 0 77 chr15 19023397 19023584 -66672170 + AluJb SINE Alu 152 307 -5 2285 86 0 0 chr15 19023685 19023989 -66671765 + AluSg SINE Alu 1 304 -6 1402 214 19 0 chr15 19024113 19024375 -66671379 + Tigger7 DNA MER2_type 1 267 -2220 382 252 19 28 chr15 19026342 19026449 -66669305 + MER5A DNA MER1_type 2 107 -82 1860 157 0 10 chr15 19027101 19027414 -66668340 + AluJb SINE Alu 1 310 -2 1257 184 29 36 chr15 19027416 19027694 -66668060 - AluJo SINE Alu -36 276 1 1640 176 23 3 chr15 19028495 19028796 -66666958 - AluJb SINE Alu -5 307 1 2021 89 43 0 chr15 19029525 19029806 -66665948 - AluSx SINE Alu -19 293 1 1611 167 0 14 chr15 19030434 19030716 -66665038 - AluJo SINE Alu -30 282 5 213 305 152 14 chr15 19031111 19031321 -66664433 + L2 LINE L2 2489 2727 -587 228 250 0 0 chr15 19031401 19031449 -66664305 + L2 LINE L2 3225 3272 0 826 94 0 0 chr15 19031608 19031714 -66664040 - U6 snRNA snRNA -1 106 1 292 333 78 35 chr15 19032624 19032765 -66662989 + MER5A DNA MER1_type 43 189 0 2120 57 43 7 chr15 19032789 19033069 -66662685 - AluY SINE Alu -21 290 1 1165 149 6 0 chr15 19033176 19033357 -66662397 + AluSc SINE Alu 1 182 -127 1264 253 33 14 chr15 19034450 19034813 -66660941 + L1ME3 LINE L1 5793 6162 0 303 185 93 139 chr15 19034892 19035043 -66660711 - L1MC/D LINE L1 -2330 5547 5404 1647 164 3 24 chr15 19035059 19035357 -66660397 - AluJb SINE Alu -20 292 1 573 192 64 24 chr15 19035491 19035616 -66660138 - AluJb SINE Alu -181 131 2 1688 201 96 11 chr15 19035617 19036055 -66659699 - L1MC/D LINE L1 -3057 3158 2684 1202 128 0 16 chr15 19036062 19036249 -66659505 - AluSx SINE Alu -9 301 118 969 113 7 13 chr15 19036298 19036448 -66659306 - AluSq/x SINE Alu -164 149 1 685 104 10 0 chr15 19036453 19036549 -66659205 - AluSx SINE Alu -179 133 37 536 86 0 0 chr15 19036656 19036726 -66659028 - AluS SINE Alu -242 71 2 1791 204 48 71 chr15 19036727 19036974 -66658780 - L1MEc LINE L1 -3524 2691 2440 1534 191 14 10 chr15 19036974 19037268 -66658486 - AluJo SINE Alu -17 295 1 1791 204 48 71 chr15 19037268 19037406 -66658348 - L1MEc LINE L1 -3775 2440 2300 1489 185 0 40 chr15 19037406 19037708 -66658046 + AluJo SINE Alu 3 292 -20 1791 204 48 71 chr15 19037708 19037912 -66657842 - L1MEc LINE L1 -3915 2300 2093 2503 49 0 0 chr15 19037912 19038218 -66657536 - AluY SINE Alu -5 306 1 1791 204 48 71 chr15 19038218 19038286 -66657468 - L1MEc LINE L1 -4122 2093 2090 1805 104 4 0 chr15 19038286 19038537 -66657217 - AluSg SINE Alu -1 309 58 1791 204 48 71 chr15 19038537 19038571 -66657183 - L1MEc LINE L1 -4125 2090 2057 440 189 0 0 chr15 19038571 19038645 -66657109 + MER5A DNA MER1_type 1 74 -115 1495 175 7 25 chr15 19038645 19038925 -66656829 - AluJo SINE Alu -1 311 37 290 143 0 0 chr15 19039036 19039085 -66656669 + FAM SINE Alu 127 175 0 452 173 12 0 chr15 19039102 19039183 -66656571 + MER5A DNA MER1_type 108 189 0 285 300 105 5 chr15 19039184 19039394 -66656360 - L1MEc LINE L1 -4332 2064 1834 2259 96 3 3 chr15 19039507 19039820 -66655934 - AluSp SINE Alu 0 313 1 363 235 15 0 chr15 19040356 19040424 -66655330 + L2 LINE L2 3233 3301 -12 2320 76 7 0 chr15 19040698 19040999 -66654755 - AluY SINE Alu -8 303 1 379 329 68 59 chr15 19041723 19041960 -66653794 + MLT1L LTR MaLR 368 606 -9 2068 110 17 3 chr15 19042371 19042672 -66653082 + AluSx SINE Alu 1 305 -7 1916 125 0 14 chr15 19042851 19043139 -66652615 + AluSx SINE Alu 1 284 -28 297 268 95 49 chr15 19044987 19045271 -66650483 + L1ME4a LINE L1 5598 5894 -227 421 77 0 0 chr15 19045360 19045425 -66650329 + L1MA3 LINE L1 6241 6305 0 2094 114 0 3 chr15 19045447 19045745 -66650009 + AluSq SINE Alu 1 297 -16 450 0 0 0 chr15 19045745 19045795 -66649959 + (TA)n Simple_repeat Simple_repeat 2 51 0 1689 153 0 27 chr15 19045805 19046099 -66649655 + AluJb SINE Alu 7 292 -20 1313 157 20 137 chr15 19047358 19047541 -66648213 - AluYb8 SINE Alu -7 311 187 1747 68 0 0 chr15 19047541 19047746 -66648008 - AluSg/x SINE Alu -23 287 83 1313 157 20 137 chr15 19047746 19047913 -66647841 - AluYb8 SINE Alu -131 187 2 307 333 11 11 chr15 19047936 19048023 -66647731 - MIR SINE MIR -102 106 20 721 213 0 0 chr15 19048097 19048219 -66647535 + FLAM_C SINE Alu 2 123 -20 51 65 0 0 chr15 19048221 19048314 -66647440 + AT_rich Low_complexity Low_complexity 1 93 0 1139 152 0 0 chr15 19048328 19048493 -66647261 + AluJb SINE Alu 135 299 -13 2159 108 6 22 chr15 19048571 19048885 -66646869 + AluSx SINE Alu 1 309 -3 3259 139 44 2 chr15 19049050 19049525 -66646229 + LTR42 LTR ERVL 1 495 0 494 307 51 31 chr15 19050293 19050550 -66645204 + L2 LINE L2 2251 2512 -802 1310 178 23 5 chr15 19051045 19051264 -66644490 + AluJo SINE Alu 1 223 -89 727 212 0 0 chr15 19051980 19052098 -66643656 + FLAM_A SINE Alu 1 118 -15 40 0 0 0 chr15 19052098 19052138 -66643616 + AT_rich Low_complexity Low_complexity 1 40 0 240 319 121 0 chr15 19053519 19053610 -66642144 - L2 LINE L2 -37 3235 3134 27 49 0 0 chr15 19056783 19056824 -66638930 + AT_rich Low_complexity Low_complexity 1 41 0 2084 135 7 0 chr15 19056881 19057178 -66638576 + AluSx SINE Alu 1 299 -13 2317 93 0 26 chr15 19057322 19057633 -66638121 - AluSx SINE Alu -9 303 1 821 265 36 56 chr15 19058140 19058236 -66637518 - MIR SINE MIR -5 257 161 2375 64 0 0 chr15 19058236 19058516 -66637238 - AluSg SINE Alu -13 297 18 821 265 36 56 chr15 19058516 19058668 -66637086 - MIR SINE MIR -101 161 14 1847 142 0 48 chr15 19059243 19059553 -66636201 + AluJb SINE Alu 3 297 -15 1703 136 159 7 chr15 19059824 19060133 -66635621 - MER46B DNA MER2_type -4 232 2 291 244 154 57 chr15 19060199 19060322 -66635432 - AluJo SINE Alu -166 136 2 2109 128 0 23 chr15 19061006 19061310 -66634444 + AluSx SINE Alu 1 297 -15 213 233 0 0 chr15 19061651 19061694 -66634060 + CT-rich Low_complexity Low_complexity 2 44 0 2244 111 0 7 chr15 19063065 19063371 -66632383 + AluSg SINE Alu 1 304 -6 2407 97 0 0 chr15 19063833 19064143 -66631611 + AluSx SINE Alu 1 310 -2 2365 86 0 13 chr15 19064398 19064702 -66631052 + AluSg SINE Alu 1 300 -10 2401 67 3 0 chr15 19065232 19065516 -66630238 + AluSp SINE Alu 15 299 -14 2126 92 3 3 chr15 19066955 19067274 -66628480 + AluSq SINE Alu 1 319 0 1775 116 20 53 chr15 19067436 19067737 -66628017 - AluJo SINE Alu -21 291 1 617 217 8 16 chr15 19068054 19068183 -66627571 + FLAM_A SINE Alu 1 128 -5 1094 126 5 73 chr15 19068242 19068448 -66627306 + AluJo SINE Alu 97 288 -24 2386 93 0 0 chr15 19068699 19068999 -66626755 + AluSg SINE Alu 1 300 -10 1685 155 6 59 chr15 19069162 19069371 -66626383 - AluJb SINE Alu -6 306 118 2605 124 22 0 chr15 19069371 19069727 -66626027 + THE1B LTR MaLR 1 364 0 1685 155 6 59 chr15 19069727 19069840 -66625914 - AluJb SINE Alu -194 118 1 1715 174 10 10 chr15 19069922 19070216 -66625538 - AluJo SINE Alu -18 294 1 264 175 88 0 chr15 19071179 19071236 -66624518 + L2 LINE L2 3248 3309 -4 2393 90 0 0 chr15 19071492 19071792 -66623962 + AluSc SINE Alu 1 300 -9 306 286 13 0 chr15 19072059 19072136 -66623618 - L2 LINE L2 -2 3311 3234 2038 96 16 68 chr15 19072149 19072472 -66623282 + AluSq SINE Alu 1 306 -7 302 224 24 35 chr15 19072497 19072582 -66623172 - MIR SINE MIR -178 84 1 2294 97 0 7 chr15 19072708 19073017 -66622737 - AluSx SINE Alu -5 307 1 2432 80 3 0 chr15 19073102 19073404 -66622350 + AluSg SINE Alu 1 303 -7 2268 87 7 0 chr15 19073548 19073835 -66621919 + AluSq SINE Alu 5 293 -20 1473 191 29 35 chr15 19074195 19074542 -66621212 + AluJb SINE Alu 1 345 0 345 171 17 16 chr15 19074722 19074796 -66620958 + FLAM SINE Alu 62 118 -15 1860 157 0 7 chr15 19076087 19076380 -66619374 + AluSx SINE Alu 1 291 -21 860 250 113 98 chr15 19077019 19077369 -66618385 + L2 LINE L2 2337 2680 -633 2110 109 14 0 chr15 19077369 19077663 -66618091 + AluSg SINE Alu 1 298 -12 860 250 113 98 chr15 19077663 19077685 -66618069 + L2 LINE L2 2680 2700 -613 1411 159 17 29 chr15 19077685 19077924 -66617830 + MER46A DNA MER2_type 1 236 0 860 250 113 98 chr15 19077924 19078344 -66617410 + L2 LINE L2 2700 3132 -181 1230 235 125 37 chr15 19078344 19078868 -66616886 + MLT1G1 LTR MaLR 1 555 0 495 258 68 37 chr15 19078875 19079038 -66616716 + L2 LINE L2 3136 3303 -10 1425 198 37 4 chr15 19079116 19079384 -66616370 + AluJo SINE Alu 1 277 -35 207 0 0 0 chr15 19079390 19079413 -66616341 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2254 95 37 0 chr15 19079810 19080105 -66615649 + AluSx SINE Alu 1 306 -6 252 192 211 0 chr15 19080355 19080407 -66615347 - L2 LINE L2 -5 3308 3246 774 101 37 0 chr15 19081131 19081240 -66614514 - AluSq/x SINE Alu -199 113 1 975 147 49 38 chr15 19081288 19081472 -66614282 - Tigger2a DNA MER2_type -248 186 1 1467 163 32 4 chr15 19081472 19081718 -66614036 + Tigger2a DNA MER2_type 192 444 0 801 225 108 13 chr15 19081720 19081997 -66613757 - L1M4 LINE L1 -2886 3260 2984 576 128 51 17 chr15 19081997 19082114 -66613640 - L1MC3 LINE L1 0 7719 2849 591 207 107 8 chr15 19082123 19082244 -66613510 + AluJo SINE Alu 10 142 -170 2251 116 0 3 chr15 19082249 19082560 -66613194 + AluSq SINE Alu 4 313 0 379 94 0 0 chr15 19082561 19082614 -66613140 - L1MC3 LINE L1 -113 7672 7620 560 91 0 39 chr15 19082615 19082714 -66613040 - AluSg/x SINE Alu 0 302 207 885 144 5 113 chr15 19082744 19082806 -66612948 - L1MC3 LINE L1 -108 7677 7610 2240 119 0 0 chr15 19082806 19083101 -66612653 - AluSg SINE Alu -15 295 1 885 144 5 113 chr15 19083101 19083146 -66612608 - L1MC3 LINE L1 -175 7610 7562 2267 102 13 0 chr15 19083146 19083451 -66612303 - AluSx SINE Alu -3 309 1 885 144 5 113 chr15 19083451 19083564 -66612190 - L1MC3 LINE L1 -223 7562 7480 914 209 88 55 chr15 19083564 19083731 -66612023 - L1MC3 LINE L1 -3170 2910 2727 2219 107 7 0 chr15 19083731 19084021 -66611733 + AluSq SINE Alu 1 292 -21 914 209 88 55 chr15 19084021 19084160 -66611594 - L1MC3 LINE L1 -3353 2727 2594 1303 183 8 52 chr15 19084177 19084199 -66611555 - AluJo SINE Alu -21 291 270 2056 117 3 0 chr15 19084199 19084509 -66611245 + AluSq SINE Alu 1 311 0 1303 183 8 52 chr15 19084509 19084753 -66611001 - AluJo SINE Alu -42 270 36 2850 251 135 44 chr15 19084753 19085342 -66610412 - L1MC3 LINE L1 -3547 2533 1999 2228 108 0 0 chr15 19085342 19085637 -66610117 + AluSq SINE Alu 1 295 -18 2850 251 135 44 chr15 19085637 19085985 -66609769 - L1MC3 LINE L1 -4081 1999 1684 2130 125 3 6 chr15 19085985 19086298 -66609456 - AluSx SINE Alu 0 312 1 2850 251 135 44 chr15 19086298 19087162 -66608592 - L1MC3 LINE L1 -4396 1684 901 2517 72 0 7 chr15 19087162 19087467 -66608287 - AluSg SINE Alu -6 304 2 2850 251 135 44 chr15 19087467 19087937 -66607817 - L1MC3 LINE L1 -5179 901 2 550 335 51 4 chr15 19088234 19088587 -66607167 + L2 LINE L2 2720 3087 -185 1450 208 136 59 chr15 19088829 19089124 -66606630 - MER20B DNA MER1_type -28 755 484 1719 134 84 0 chr15 19089124 19089385 -66606369 + AluSg SINE Alu 6 288 -22 1450 208 136 59 chr15 19089385 19089517 -66606237 - MER20B DNA MER1_type -299 484 364 1689 158 37 3 chr15 19089517 19089814 -66605940 + AluSx SINE Alu 1 307 -5 1450 208 136 59 chr15 19089814 19089914 -66605840 - MER20B DNA MER1_type -419 364 186 587 136 88 61 chr15 19089919 19089994 -66605760 + L1MA8 LINE L1 6137 6208 -83 4562 172 53 24 chr15 19089994 19090596 -66605158 + MER6 DNA MER2_type 1 584 -281 2315 83 3 10 chr15 19090596 19090897 -66604857 - AluSc SINE Alu -10 299 1 1693 196 7 3 chr15 19090898 19091194 -66604560 - AluJo SINE Alu -11 301 5 4562 172 53 24 chr15 19091194 19091426 -66604328 + MER6 DNA MER2_type 583 861 -4 587 136 88 61 chr15 19091426 19091497 -66604257 + L1MA8 LINE L1 6208 6287 -4 2213 85 7 4 chr15 19091508 19091789 -66603965 + AluSq SINE Alu 1 282 -31 216 0 0 0 chr15 19091794 19091818 -66603936 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1708 177 0 35 chr15 19091837 19092154 -66603600 + AluJo SINE Alu 1 306 -6 1257 147 35 15 chr15 19092270 19092522 -66603232 - L1MB3 LINE L1 -15 6165 5914 1225 203 59 53 chr15 19092522 19092862 -66602892 + MER2 DNA MER2_type 3 344 0 1257 147 35 15 chr15 19092862 19092884 -66602870 - L1MB3 LINE L1 -266 5914 5894 321 271 84 0 chr15 19092898 19093005 -66602749 - L1MC4a LINE L1 -1892 5916 5801 203 156 0 0 chr15 19093072 19093104 -66602650 + (CA)n Simple_repeat Simple_repeat 2 33 0 2234 101 7 3 chr15 19093434 19093731 -66602023 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr15 19093733 19093758 -66601996 + (CA)n Simple_repeat Simple_repeat 2 26 0 2180 97 43 7 chr15 19093816 19094116 -66601638 - AluSp SINE Alu -2 311 1 2307 96 0 10 chr15 19094393 19094705 -66601049 + AluSx SINE Alu 1 309 -3 1367 89 6 6 chr15 19094705 19094885 -66600869 + AluSq SINE Alu 120 299 -14 474 271 103 48 chr15 19096126 19096366 -66599388 + MIR SINE MIR 12 262 0 937 93 0 16 chr15 19096392 19096521 -66599233 - AluJb SINE Alu -185 127 1 216 86 0 0 chr15 19096529 19096564 -66599190 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 2070 129 0 0 chr15 19096564 19096850 -66598904 - AluSx SINE Alu -26 286 1 2450 67 0 0 chr15 19097041 19097339 -66598415 + AluSc SINE Alu 5 302 -7 470 172 46 0 chr15 19097612 19097699 -66598055 - MER20 DNA MER1_type -3 216 126 1651 176 11 0 chr15 19097699 19097971 -66597783 + AluJb SINE Alu 1 275 -37 207 0 0 0 chr15 19097972 19097995 -66597759 + (TC)n Simple_repeat Simple_repeat 2 24 0 597 176 81 37 chr15 19098028 19098164 -66597590 - MER20 DNA MER1_type -75 144 3 251 324 102 62 chr15 19098182 19099008 -66596746 + L2 LINE L2 1112 1962 -1352 286 70 0 0 chr15 19099035 19099078 -66596676 - AluSc SINE Alu -3 296 254 288 103 0 0 chr15 19099100 19099139 -66596615 - AluSq SINE Alu -130 173 135 2256 85 6 29 chr15 19099139 19099455 -66596299 - AluSq SINE Alu -2 311 3 331 274 69 129 chr15 19099745 19100095 -66595659 + L2 LINE L2 2939 3267 -5 1487 104 125 57 chr15 19101032 19101073 -66594681 - THE1C LTR MaLR 0 375 338 2169 134 0 0 chr15 19101073 19101380 -66594374 + AluSx SINE Alu 1 307 -5 1487 104 125 57 chr15 19101380 19101618 -66594136 - THE1C LTR MaLR -37 338 77 1944 139 16 19 chr15 19101667 19101843 -66593911 - AluSg SINE Alu 0 310 134 2407 89 0 0 chr15 19101843 19102147 -66593607 - AluSx SINE Alu -8 304 1 1944 139 16 19 chr15 19102147 19102279 -66593475 - AluSg SINE Alu -176 134 3 6871 120 33 14 chr15 19102282 19103332 -66592422 - THE1C-int LTR MaLR -6 1574 505 2277 83 10 13 chr15 19103711 19104011 -66591743 - AluSp SINE Alu -14 299 1 1331 142 23 14 chr15 19104503 19104722 -66591032 + AluJb SINE Alu 1 221 -91 2328 115 0 3 chr15 19105017 19105329 -66590425 - AluSq SINE Alu -2 311 1 569 211 19 0 chr15 19105699 19105803 -66589951 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr15 19105954 19105982 -66589772 + AT_rich Low_complexity Low_complexity 1 28 0 1699 175 6 38 chr15 19106037 19106351 -66589403 - AluJo SINE Alu -8 304 1 492 189 144 15 chr15 19106398 19106530 -66589224 - MIR SINE MIR -14 248 100 2523 56 10 0 chr15 19106659 19106962 -66588792 - AluY SINE Alu -4 307 2 640 174 43 17 chr15 19107043 19107158 -66588596 + FLAM_C SINE Alu 2 119 -24 216 0 0 0 chr15 19107159 19107183 -66588571 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 671 153 0 18 chr15 19107597 19107708 -66588046 - FLAM_A SINE Alu -14 128 20 2287 98 0 16 chr15 19107825 19108008 -66587746 - AluSx SINE Alu 0 312 135 2377 106 0 0 chr15 19108008 19108309 -66587445 - AluSx SINE Alu -11 301 1 2287 98 0 16 chr15 19108309 19108442 -66587312 - AluSx SINE Alu -177 135 1 1713 144 3 41 chr15 19108688 19109013 -66586741 + AluSx SINE Alu 2 315 0 502 318 103 29 chr15 19109223 19109465 -66586289 - MIR SINE MIR -1 261 2 1399 135 154 26 chr15 19109738 19110004 -66585750 - AluSg SINE Alu -10 300 1 209 130 43 0 chr15 19110142 19110188 -66585566 + T-rich Low_complexity Low_complexity 3 50 0 2346 101 7 0 chr15 19110197 19110495 -66585259 - AluSx SINE Alu -12 300 1 196 154 39 19 chr15 19110518 19110570 -66585184 + CT-rich Low_complexity Low_complexity 3 55 0 2282 106 0 6 chr15 19110573 19110884 -66584870 - AluSg SINE Alu -1 309 1 1475 196 38 14 chr15 19110886 19111177 -66584577 - AluJo SINE Alu -14 298 1 1855 165 3 0 chr15 19111460 19111757 -66583997 - AluJb SINE Alu -14 298 1 278 256 61 0 chr15 19111826 19111908 -66583846 + MIR SINE MIR 66 152 -110 505 120 0 27 chr15 19112474 19112547 -66583207 + Tigger2 DNA MER2_type 1 71 -2647 285 203 102 0 chr15 19112547 19112606 -66583148 - MER2 DNA MER2_type 0 345 281 1701 185 9 31 chr15 19112613 19112932 -66582822 + AluJb SINE Alu 1 312 0 395 222 25 0 chr15 19112934 19113015 -66582739 - MER8 DNA MER2_type -78 161 79 2404 91 0 0 chr15 19114080 19114377 -66581377 - AluSg SINE Alu -13 297 1 2173 131 0 0 chr15 19114426 19114724 -66581030 + AluSx SINE Alu 1 298 -14 1909 171 0 0 chr15 19114771 19115075 -66580679 - AluJb SINE Alu -8 304 1 207 265 265 0 chr15 19115240 19115323 -66580431 - L2 LINE L2 0 3313 3209 795 134 75 59 chr15 19115389 19115575 -66580179 - MER20 DNA MER1_type 0 219 31 2406 99 0 0 chr15 19117014 19117316 -66578438 - AluSg SINE Alu -8 302 1 780 157 15 22 chr15 19117355 19117489 -66578265 - FLAM_C SINE Alu 0 133 1 343 195 0 69 chr15 19118368 19118455 -66577299 - AluSq SINE Alu -131 172 92 2276 88 0 3 chr15 19118470 19118754 -66577000 - AluSq SINE Alu -30 283 1 216 0 0 0 chr15 19118754 19118778 -66576976 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1871 141 0 36 chr15 19118783 19119088 -66576666 - AluSx SINE Alu -18 294 1 2189 119 7 0 chr15 19119337 19119640 -66576114 - AluSx SINE Alu -7 305 1 853 204 25 0 chr15 19120806 19120968 -66574786 - FRAM SINE Alu 0 166 1 2379 86 0 3 chr15 19120978 19121268 -66574486 - AluSc SINE Alu -20 289 1 2280 104 0 0 chr15 19121571 19121859 -66573895 - AluSx SINE Alu -24 288 1 1753 164 0 7 chr15 19122361 19122648 -66573106 - AluJo SINE Alu -23 289 5 1840 149 58 0 chr15 19123063 19123358 -66572396 - AluJb SINE Alu 0 312 1 379 175 90 166 chr15 19123359 19123515 -66572239 + MER46C DNA MER2_type 22 188 -150 1662 149 0 88 chr15 19123515 19123685 -66572069 - AluJo SINE Alu -25 287 104 2406 107 0 0 chr15 19123685 19123994 -66571760 - AluSx SINE Alu -3 309 1 2085 147 7 0 chr15 19124001 19124307 -66571447 - AluSx SINE Alu -2 310 3 1662 149 0 88 chr15 19124307 19124436 -66571318 - AluJo SINE Alu -214 98 7 379 175 90 166 chr15 19124436 19124490 -66571264 + MER46C DNA MER2_type 188 216 -122 2459 86 3 0 chr15 19124685 19124988 -66570766 - AluSg SINE Alu -6 304 1 2669 49 0 0 chr15 19125126 19125433 -66570321 - AluY SINE Alu -4 307 1 23 68 0 0 chr15 19125861 19125905 -66569849 + AT_rich Low_complexity Low_complexity 1 44 0 195 42 0 0 chr15 19127356 19127380 -66568374 + (A)n Simple_repeat Simple_repeat 1 24 0 2212 110 7 3 chr15 19127482 19127781 -66567973 - AluSx SINE Alu -9 303 4 212 376 40 0 chr15 19128295 19128420 -66567334 - MIR SINE MIR -101 161 32 2249 99 0 3 chr15 19128429 19128755 -66566999 - AluSg SINE Alu 0 310 1 189 320 97 29 chr15 19128925 19128999 -66566755 + MER5A DNA MER1_type 70 154 -35 1871 136 55 33 chr15 19128999 19129329 -66566425 + MER1B DNA MER1_type 1 337 0 189 320 97 29 chr15 19129329 19129357 -66566397 + MER5A DNA MER1_type 154 179 -10 2594 47 0 3 chr15 19129725 19130024 -66565730 + AluY SINE Alu 1 298 -13 2361 100 0 0 chr15 19130091 19130401 -66565353 - AluSg SINE Alu 0 310 1 24 0 0 0 chr15 19130909 19130933 -66564821 + AT_rich Low_complexity Low_complexity 1 24 0 2317 94 0 7 chr15 19131478 19131777 -66563977 - AluSx SINE Alu -15 297 1 1297 149 0 5 chr15 19132027 19132222 -66563532 - AluJ SINE Alu -14 298 105 499 103 0 26 chr15 19132226 19132304 -66563450 + AluS SINE Alu 2 77 -236 806 142 0 0 chr15 19132304 19132424 -66563330 - AluJ SINE Alu -181 121 2 2418 101 0 0 chr15 19133218 19133525 -66562229 - AluSx SINE Alu -5 307 1 304 198 164 35 chr15 19133528 19133644 -66562110 + L1ME4a LINE L1 5990 6120 -1 1066 197 30 0 chr15 19133699 19133897 -66561857 - MER58A DNA MER1_type -19 205 2 635 217 87 60 chr15 19133906 19134090 -66561664 - MER5A DNA MER1_type 0 189 1 551 153 36 27 chr15 19134773 19134884 -66560870 - FRAM SINE Alu -22 154 43 1823 163 41 7 chr15 19135117 19135411 -66560343 + AluJo SINE Alu 1 304 -8 420 195 24 0 chr15 19135751 19135833 -66559921 - HsTC2 DNA Tc2 -1812 86 3 2232 100 17 0 chr15 19136725 19137024 -66558730 - AluSg SINE Alu -6 304 1 1277 107 25 10 chr15 19138383 19138579 -66557175 - Tigger1 DNA MER2_type 0 2418 2220 1166 123 25 0 chr15 19138584 19138747 -66557007 + AluSx SINE Alu 1 167 -145 2340 104 0 0 chr15 19138761 19139069 -66556685 - AluSg SINE Alu -2 308 1 5798 108 56 21 chr15 19139069 19139985 -66555769 - Tigger1 DNA MER2_type -726 1692 745 753 96 39 0 chr15 19139983 19140087 -66555667 - Tigger1 DNA MER2_type -1787 631 524 * 1747 102 120 11 chr15 19140088 19140354 -66555400 - AluSg1 SINE Alu -14 295 1 899 151 84 0 chr15 19140357 19140523 -66555231 - Tigger1 DNA MER2_type -1961 457 278 1158 172 20 5 chr15 19140524 19140722 -66555032 + AluJb SINE Alu 88 288 -24 1341 150 146 0 chr15 19140722 19140975 -66554779 - Tigger1 DNA MER2_type -2127 291 2 280 214 107 29 chr15 19140975 19141078 -66554676 + MIR SINE MIR 152 262 0 342 255 49 29 chr15 19141386 19141488 -66554266 + MIR SINE MIR 7 110 -152 638 112 0 0 chr15 19141759 19141848 -66553906 + FLAM_A SINE Alu 22 110 -32 201 39 0 0 chr15 19141849 19141875 -66553879 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chr15 19141874 19141916 -66553838 + (CA)n Simple_repeat Simple_repeat 1 42 0 5111 126 46 29 chr15 19141916 19142828 -66552926 + L1MA4A LINE L1 5369 6296 -7 548 43 0 0 chr15 19142993 19143062 -66552692 - MER41A LTR ERV1 -86 468 400 596 220 15 8 chr15 19143064 19143196 -66552558 - FLAM_A SINE Alu 0 133 1 426 277 214 10 chr15 19143300 19143506 -66552248 - MIR SINE MIR -13 249 2 1677 168 18 11 chr15 19143543 19143829 -66551925 + AluJo SINE Alu 1 288 -24 2092 136 3 0 chr15 19143837 19144139 -66551615 + AluSx SINE Alu 1 303 -9 693 183 48 0 chr15 19144150 19144276 -66551478 + FLAM_C SINE Alu 2 133 0 2236 104 7 3 chr15 19144553 19144851 -66550903 + AluSx SINE Alu 1 299 -13 780 219 166 33 chr15 19144877 19145178 -66550576 - MER2 DNA MER2_type 0 344 4 2334 80 3 17 chr15 19145386 19145688 -66550066 + AluSx SINE Alu 1 298 -14 1746 171 25 0 chr15 19145862 19146142 -66549612 + AluSx SINE Alu 1 287 -25 2579 50 0 0 chr15 19146462 19146760 -66548994 - AluY SINE Alu -13 298 1 2167 98 28 0 chr15 19146760 19147047 -66548707 - AluSg SINE Alu -15 295 1 2238 114 0 3 chr15 19147570 19147869 -66547885 - AluSg SINE Alu -12 298 1 2202 119 0 10 chr15 19147899 19148201 -66547553 - AluSx SINE Alu -13 299 1 1205 163 202 0 chr15 19148981 19149233 -66546521 + AluJo SINE Alu 1 303 -9 1617 156 33 11 chr15 19149241 19149516 -66546238 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr15 19149516 19149543 -66546211 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 333 0 38 chr15 19150089 19150194 -66545560 + L2 LINE L2 1806 1906 -1408 584 203 101 0 chr15 19150207 19150355 -66545399 - L1ME4a LINE L1 -4 6117 5955 598 208 15 15 chr15 19150898 19151028 -66544726 + MER5A DNA MER1_type 60 189 0 2241 70 0 11 chr15 19154135 19154450 -66541304 - AluY SINE Alu 0 312 1 216 0 0 0 chr15 19154467 19154491 -66541263 + (A)n Simple_repeat Simple_repeat 1 24 0 894 149 11 96 chr15 19154816 19155004 -66540750 + AluJb SINE Alu 133 304 -8 183 300 82 27 chr15 19155033 19155143 -66540611 - MIR3 SINE MIR -7 201 86 226 274 0 0 chr15 19155278 19155329 -66540425 - LTR69 LTR ERVL -4 584 534 2403 81 3 0 chr15 19155372 19155667 -66540087 - AluY SINE Alu -15 296 1 1805 138 29 0 chr15 19155684 19155960 -66539794 - AluSx SINE Alu 0 312 29 228 100 0 0 chr15 19156072 19156102 -66539652 + Alu SINE Alu 14 43 -259 374 74 0 0 chr15 19156372 19156426 -66539328 - AluSc SINE Alu 0 299 246 21 0 0 0 chr15 19156820 19156841 -66538913 + AT_rich Low_complexity Low_complexity 1 21 0 411 98 81 40 chr15 19157332 19157505 -66538249 + (TA)n Simple_repeat Simple_repeat 1 180 0 2254 75 0 7 chr15 19157505 19157783 -66537971 - AluY SINE Alu -26 285 10 1524 121 0 130 chr15 19157782 19158105 -66537649 - AluSq SINE Alu -32 281 1 * 529 261 37 22 chr15 19158130 19158264 -66537490 + MER58B DNA MER1_type 1 136 -205 2013 122 17 3 chr15 19158264 19158551 -66537203 + AluSx SINE Alu 1 291 -21 2397 105 0 3 chr15 19158912 19159225 -66536529 - AluSx SINE Alu 0 312 1 2290 75 7 0 chr15 19159887 19160166 -66535588 - AluSp SINE Alu -12 301 21 296 189 0 0 chr15 19160455 19160508 -66535246 - Alu SINE Alu -255 53 1 187 265 88 0 chr15 19160824 19160892 -66534862 + MIR SINE MIR 68 141 -121 657 204 156 0 chr15 19161192 19161359 -66534395 - L1MB4 LINE L1 0 6180 5988 2066 139 3 0 chr15 19161399 19161693 -66534061 - AluSx SINE Alu -17 295 1 1767 151 0 45 chr15 19161747 19161898 -66533856 - AluJo SINE Alu -29 283 150 2381 72 7 0 chr15 19161898 19162189 -66533565 - AluSc SINE Alu -16 293 1 1767 151 0 45 chr15 19162189 19162328 -66533426 - AluJo SINE Alu -162 150 6 856 209 50 0 chr15 19162668 19162850 -66532904 - MER58B DNA MER1_type -4 337 147 2027 113 0 42 chr15 19162852 19163161 -66532593 - AluSx SINE Alu -14 298 3 395 268 24 31 chr15 19163163 19163290 -66532464 - AluSg/x SINE Alu 0 300 175 2141 79 0 25 chr15 19163605 19163883 -66531871 - AluY SINE Alu -40 271 1 1896 162 0 3 chr15 19163932 19164228 -66531526 + AluJo SINE Alu 1 295 -17 210 244 0 0 chr15 19164304 19164349 -66531405 + (TAG)n Simple_repeat Simple_repeat 1 45 0 884 163 59 0 chr15 19164394 19164547 -66531207 - AluJb SINE Alu -14 298 137 1390 193 36 103 chr15 19164870 19164975 -66530779 + L1MC4 LINE L1 7554 7664 -378 573 226 40 16 chr15 19164975 19165099 -66530655 - FLAM_A SINE Alu -6 127 1 1390 193 36 103 chr15 19165099 19165134 -66530620 + L1MC4 LINE L1 7664 7700 -342 1773 151 21 11 chr15 19165134 19165418 -66530336 + AluJb SINE Alu 1 287 -25 1390 193 36 103 chr15 19165418 19165800 -66529954 + L1MC4 LINE L1 7700 8042 0 1142 188 118 30 chr15 19165879 19166150 -66529604 - AluJo SINE Alu -6 296 2 223 321 26 62 chr15 19167010 19167207 -66528547 + MIR3 SINE MIR 2 189 -57 860 151 145 38 chr15 19167237 19167423 -66528331 + AluJb SINE Alu 84 289 -23 2042 125 10 7 chr15 19167573 19167870 -66527884 + AluSx SINE Alu 1 298 -14 2041 154 0 13 chr15 19168086 19168391 -66527363 + AluSx SINE Alu 1 301 -11 2292 111 10 0 chr15 19168394 19168700 -66527054 + AluSc SINE Alu 1 309 0 2222 115 6 16 chr15 19169374 19169686 -66526068 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr15 19169722 19169744 -66526010 + AT_rich Low_complexity Low_complexity 1 22 0 800 170 0 22 chr15 19170043 19170178 -66525576 - FLAM_C SINE Alu 0 133 2 2279 100 0 3 chr15 19170221 19170521 -66525233 - AluSq SINE Alu -8 305 7 186 320 26 26 chr15 19170700 19170778 -66524976 - L2 LINE L2 -494 2820 2743 405 0 0 0 chr15 19170778 19170823 -66524931 + (TG)n Simple_repeat Simple_repeat 2 46 0 392 242 180 31 chr15 19170936 19171064 -66524690 + MER5A DNA MER1_type 34 180 -9 2255 105 0 3 chr15 19171311 19171605 -66524149 + AluSc SINE Alu 1 293 -16 268 340 58 0 chr15 19171681 19171837 -66523917 - L2 LINE L2 -974 2340 2176 1936 156 0 3 chr15 19172513 19172802 -66522952 + AluJb SINE Alu 6 293 -19 2351 86 0 17 chr15 19172812 19172947 -66522807 + AluSg SINE Alu 1 137 -173 2150 123 0 16 chr15 19172947 19173257 -66522497 + AluSx SINE Alu 1 305 -7 2351 86 0 17 chr15 19173257 19173422 -66522332 + AluSg SINE Alu 137 296 -14 2897 153 66 21 chr15 19173498 19173601 -66522153 + MER68 LTR ERV1 1 98 -464 1386 214 127 11 chr15 19173601 19173956 -66521798 - MSTD LTR MaLR 0 396 1 2897 153 66 21 chr15 19173956 19174382 -66521372 + MER68 LTR ERV1 98 554 -8 2035 144 0 22 chr15 19174678 19174997 -66520757 - AluJb SINE Alu 0 312 1 1613 172 40 7 chr15 19175626 19175928 -66519826 - AluJo SINE Alu 0 312 1 766 125 211 47 chr15 19176340 19176377 -66519377 + Tigger2 DNA MER2_type 6 36 -2682 2321 99 7 0 chr15 19176377 19176670 -66519084 - AluSc SINE Alu -14 295 1 766 125 211 47 chr15 19176670 19176734 -66519020 + Tigger2 DNA MER2_type 36 88 -2630 2247 105 10 0 chr15 19176734 19177039 -66518715 + AluSp SINE Alu 1 308 -5 766 125 211 47 chr15 19177039 19177213 -66518541 + Tigger2 DNA MER2_type 88 365 -2353 2872 133 79 6 chr15 19178075 19178555 -66517199 + Tigger2 DNA MER2_type 350 864 -1854 21 0 0 0 chr15 19178557 19178578 -66517176 + AT_rich Low_complexity Low_complexity 1 21 0 307 83 0 21 chr15 19178765 19178813 -66516941 - Alu SINE Alu -251 48 2 4195 93 30 71 chr15 19178817 19178854 -66516900 + Tigger2 DNA MER2_type 851 888 -1830 2201 113 0 0 chr15 19178854 19179188 -66516566 + AluSx SINE Alu 1 334 0 4195 93 30 71 chr15 19179188 19179242 -66516512 + Tigger2 DNA MER2_type 888 943 -1775 2338 102 3 6 chr15 19179242 19179555 -66516199 + AluSx SINE Alu 1 312 0 4195 93 30 71 chr15 19179555 19180151 -66515603 + Tigger2 DNA MER2_type 943 1512 -1206 2176 114 10 0 chr15 19180151 19180450 -66515304 - AluSx SINE Alu -10 302 1 2547 62 0 0 chr15 19182650 19182957 -66512797 - AluY SINE Alu -4 307 1 2282 98 30 0 chr15 19183611 19183906 -66511848 - AluSx SINE Alu -8 304 1 195 204 0 0 chr15 19185066 19185115 -66510639 + GA-rich Low_complexity Low_complexity 4 52 0 2056 91 11 21 chr15 19186042 19186329 -66509425 + AluSg SINE Alu 6 289 -21 1410 199 62 21 chr15 19187372 19187663 -66508091 + AluJo SINE Alu 1 303 -9 819 221 0 12 chr15 19188199 19188362 -66507392 - FRAM SINE Alu -5 161 1 492 292 28 48 chr15 19188397 19188647 -66507107 + MIR SINE MIR 15 259 -3 2064 123 57 29 chr15 19190373 19190723 -66505031 + MER46B DNA MER2_type 2 236 0 1704 181 0 4 chr15 19192383 19192659 -66503095 - AluJb SINE Alu -37 275 1 30 27 0 0 chr15 19192782 19192819 -66502935 + AT_rich Low_complexity Low_complexity 1 37 0 2218 103 7 10 chr15 19193066 19193367 -66502387 - AluSp SINE Alu -11 302 3 246 32 0 0 chr15 19193713 19193744 -66502010 + (TG)n Simple_repeat Simple_repeat 2 32 0 2089 117 12 55 chr15 19194293 19194619 -66501135 - AluSx SINE Alu 0 312 1 879 165 0 0 chr15 19194729 19194856 -66500898 - FLAM_C SINE Alu -16 127 1 1136 204 113 6 chr15 19194856 19195112 -66500642 - L1ME1 LINE L1 -33 6133 5855 2290 101 7 0 chr15 19195112 19195409 -66500345 - AluSq SINE Alu -14 299 1 1136 204 113 6 chr15 19195409 19195438 -66500316 - L1ME1 LINE L1 -311 5855 5831 2087 143 0 19 chr15 19195454 19195768 -66499986 - AluJo SINE Alu -4 308 1 2108 193 42 0 chr15 19196079 19196488 -66499266 - MSTB LTR MaLR 0 426 1 983 130 34 45 chr15 19196552 19196711 -66499043 - MER20 DNA MER1_type 0 219 61 2275 111 0 0 chr15 19196711 19197009 -66498745 + AluSx SINE Alu 1 298 -14 983 130 34 45 chr15 19197009 19197026 -66498728 - MER20 DNA MER1_type -158 61 45 188 229 260 21 chr15 19197029 19197125 -66498629 - MIR3 SINE MIR -48 160 42 355 302 188 10 chr15 19197334 19197536 -66498218 - MIR SINE MIR -13 249 12 436 269 86 11 chr15 19197593 19197779 -66497975 - MIR SINE MIR -55 207 8 2357 100 3 0 chr15 19197940 19198249 -66497505 - AluSx SINE Alu -2 310 1 596 273 87 0 chr15 19198392 19198575 -66497179 + MIR SINE MIR 31 229 -33 2568 55 0 16 chr15 19199157 19199466 -66496288 - AluY SINE Alu 0 311 8 232 185 19 0 chr15 19199566 19199620 -66496134 + GA-rich Low_complexity Low_complexity 1 55 0 300 316 59 0 chr15 19200775 19200911 -66494843 - MIR SINE MIR -114 148 5 1149 208 168 0 chr15 19202607 19202857 -66492897 - AluJb SINE Alu -8 294 3 2159 111 3 10 chr15 19202877 19203040 -66492714 - AluSx SINE Alu -16 296 134 2165 119 3 3 chr15 19203040 19203342 -66492412 - AluSx SINE Alu -10 302 1 2159 111 3 10 chr15 19203342 19203476 -66492278 - AluSx SINE Alu -178 134 1 594 63 0 0 chr15 19203476 19203555 -66492199 + (TG)n Simple_repeat Simple_repeat 2 80 0 2439 64 0 0 chr15 19203555 19203838 -66491916 - AluY SINE Alu -28 283 1 317 327 60 52 chr15 19203845 19204096 -66491658 - L1M4 LINE L1 -988 5158 4906 1161 146 110 0 chr15 19204102 19204321 -66491433 - L1MA4 LINE L1 -5 6295 6053 2159 124 13 0 chr15 19204419 19204726 -66491028 - AluSx SINE Alu 0 312 2 197 330 58 58 chr15 19204870 19205058 -66490696 + L2 LINE L2 2858 3045 -227 224 315 153 0 chr15 19205243 19205354 -66490400 - L2 LINE L2 0 3272 3145 264 159 143 0 chr15 19205908 19205971 -66489783 - L2 LINE L2 0 3272 3201 2396 98 3 0 chr15 19206022 19206327 -66489427 - AluSp SINE Alu -2 311 6 5693 71 18 16 chr15 19206370 19207145 -66488609 - SVA Other Other 0 1386 610 1946 136 27 7 chr15 19207350 19207651 -66488103 - AluSx SINE Alu -5 307 1 2577 179 91 62 chr15 19207881 19208489 -66487265 - MER51A LTR ERV1 -9 625 1 303 122 0 0 chr15 19208674 19208738 -66487016 - AluSg SINE Alu 0 307 244 1192 145 28 0 chr15 19208738 19208917 -66486837 - AluSg SINE Alu -121 189 6 2511 172 41 120 chr15 19208989 19209739 -66486015 - LTR8 LTR ERV1 0 691 1 279 340 90 13 chr15 19209862 19210018 -66485736 - L2 LINE L2 -1 3271 3104 2202 124 3 16 chr15 19210134 19210449 -66485305 - AluJo SINE Alu -1 311 1 278 274 186 0 chr15 19211602 19211726 -66484028 - MIR SINE MIR -6 256 110 1885 157 0 20 chr15 19211962 19212268 -66483486 - AluJb SINE Alu -12 300 1 987 127 0 0 chr15 19212474 19212608 -66483146 - FRAM SINE Alu -32 144 11 2399 107 0 0 chr15 19212702 19213010 -66482744 - AluSx SINE Alu 0 312 5 384 59 0 0 chr15 19213147 19213198 -66482556 + (CA)n Simple_repeat Simple_repeat 2 52 0 2293 105 3 0 chr15 19214955 19215249 -66480505 - AluSg SINE Alu -15 295 1 2115 142 0 0 chr15 19215322 19215631 -66480123 + AluSx SINE Alu 1 309 -3 801 259 119 16 chr15 19215692 19216049 -66479705 + MLT1I LTR MaLR 1 501 -10 2423 91 7 0 chr15 19216049 19216358 -66479396 - AluSq SINE Alu -2 311 1 1088 226 5 9 chr15 19216635 19216852 -66478902 + MER58A DNA MER1_type 1 216 -8 1851 141 0 31 chr15 19217471 19217789 -66477965 - AluJo SINE Alu 0 309 1 2086 136 7 0 chr15 19218214 19218522 -66477232 + AluSx SINE Alu 1 310 -2 632 241 77 0 chr15 19218977 19219147 -66476607 + MIR SINE MIR 59 241 -21 2164 133 0 0 chr15 19219194 19219495 -66476259 + AluSx SINE Alu 1 301 -11 2170 107 17 0 chr15 19219542 19219831 -66475923 + AluSg SINE Alu 1 294 -16 556 299 67 42 chr15 19219835 19220196 -66475558 + L1MC/D LINE L1 5273 5623 -683 2355 90 0 0 chr15 19220196 19220495 -66475259 + AluSg SINE Alu 1 299 -11 556 299 67 42 chr15 19220495 19220525 -66475229 + L1MC/D LINE L1 5623 5651 -655 1917 136 17 7 chr15 19220525 19220820 -66474934 - AluSx SINE Alu -14 298 1 556 299 67 42 chr15 19220820 19220939 -66474815 + L1MC/D LINE L1 5651 5809 -497 23 36 0 54 chr15 19220996 19221052 -66474702 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr15 19221088 19221109 -66474645 + AT_rich Low_complexity Low_complexity 1 21 0 277 191 26 104 chr15 19222082 19222121 -66473633 + MIR SINE MIR 111 151 -111 2489 87 0 0 chr15 19222121 19222432 -66473322 + AluY SINE Alu 1 311 0 277 191 26 104 chr15 19222432 19222507 -66473247 + MIR SINE MIR 151 216 -46 186 322 17 0 chr15 19222647 19222706 -66473048 + L2 LINE L2 3252 3311 -2 988 117 0 0 chr15 19222877 19223014 -66472740 - AluSp/q SINE Alu -16 297 161 1712 185 3 19 chr15 19223257 19223570 -66472184 - AluJb SINE Alu -4 308 1 1975 130 7 0 chr15 19223667 19223944 -66471810 - AluJo SINE Alu -33 279 1 306 304 37 92 chr15 19223951 19224105 -66471649 - L1M4 LINE L1 -2700 3446 3285 1894 108 104 0 chr15 19224105 19224383 -66471371 - AluSc SINE Alu -2 307 1 306 304 37 92 chr15 19224383 19224577 -66471177 - L1M4 LINE L1 -2861 3285 3117 919 216 46 27 chr15 19224613 19224879 -66470875 - L1ME1 LINE L1 -18 6148 5881 1140 139 80 15 chr15 19224879 19225080 -66470674 + AluJo SINE Alu 86 299 -13 1204 146 9 82 chr15 19225080 19225300 -66470454 - Charlie3 DNA MER1_type -2455 255 52 958 95 51 0 chr15 19225666 19225803 -66469951 - LTR23 LTR ERV1 -1 436 293 1293 132 6 0 chr15 19225822 19226004 -66469750 + AluJb SINE Alu 112 294 -18 1379 183 202 79 chr15 19226007 19226240 -66469514 - L1MC4 LINE L1 -265 7777 7574 2045 114 4 0 chr15 19226240 19226558 -66469196 - AluSx SINE Alu 0 327 9 1379 183 202 79 chr15 19226558 19226803 -66468951 - L1MC4 LINE L1 -468 7574 7238 258 175 50 12 chr15 19226828 19226908 -66468846 - L1MC4 LINE L1 -959 7083 7001 2251 169 23 8 chr15 19226909 19227299 -66468455 - MER57A LTR ERV1 0 403 8 910 219 131 25 chr15 19227318 19227555 -66468199 - L1MC4 LINE L1 -1228 6814 6553 823 193 62 0 chr15 19227645 19227806 -66467948 + FRAM SINE Alu 1 171 -5 252 59 0 0 chr15 19227847 19227881 -66467873 + (TC)n Simple_repeat Simple_repeat 2 35 0 814 219 12 0 chr15 19227882 19228042 -66467712 - FRAM SINE Alu -4 162 1 2397 92 0 0 chr15 19228482 19228776 -66466978 + AluSp SINE Alu 1 294 -19 26 64 0 0 chr15 19229764 19229811 -66465943 + AT_rich Low_complexity Low_complexity 1 47 0 230 161 32 97 chr15 19229947 19230040 -66465714 + L1ME4a LINE L1 5943 6029 -92 2101 127 0 0 chr15 19230055 19230347 -66465407 - AluSx SINE Alu -5 307 16 2092 138 7 0 chr15 19230550 19230840 -66464914 - AluSx SINE Alu -20 292 1 2282 102 3 0 chr15 19230849 19231143 -66464611 - AluSx SINE Alu -17 295 1 189 147 0 0 chr15 19231147 19231181 -66464573 + (T)n Simple_repeat Simple_repeat 1 34 0 2189 116 0 7 chr15 19231438 19231741 -66464013 - AluSx SINE Alu -10 302 2 1044 152 0 0 chr15 19231768 19232013 -66463741 + CT-rich Low_complexity Low_complexity 1 245 0 2175 92 3 54 chr15 19232013 19232330 -66463424 - AluSq SINE Alu -12 301 1 712 169 0 29 chr15 19232371 19232507 -66463247 - AluJb SINE Alu -18 294 163 331 188 0 0 chr15 19232509 19232567 -66463187 - Alu SINE Alu -249 51 1 1751 158 0 4 chr15 19232570 19232830 -66462924 + AluJb SINE Alu 40 298 -14 6994 197 54 64 chr15 19232830 19234540 -66461214 - L1MA3 LINE L1 -10 7714 5989 1582 205 7 3 chr15 19234540 19234837 -66460917 - AluJb SINE Alu -14 298 1 6994 197 54 64 chr15 19234837 19235510 -66460244 - L1MA3 LINE L1 -1735 5989 5311 2241 122 0 6 chr15 19235510 19235821 -66459933 - AluSc SINE Alu 0 309 1 6994 197 54 64 chr15 19235821 19236568 -66459186 - L1MA3 LINE L1 -2413 5311 4558 682 138 0 0 chr15 19236568 19236662 -66459092 - AluJ/FLAM SINE Alu -217 95 2 6994 197 54 64 chr15 19236662 19236819 -66458935 - L1MA3 LINE L1 -3166 4558 4401 1755 179 10 0 chr15 19236819 19237115 -66458639 + AluSx SINE Alu 1 299 -13 6994 197 54 64 chr15 19237115 19238232 -66457522 - L1MA3 LINE L1 -3323 4401 3270 878 193 0 0 chr15 19238233 19238378 -66457376 + FRAM SINE Alu 20 164 -12 1828 162 7 10 chr15 19238379 19238681 -66457073 + AluJb SINE Alu 1 301 -11 427 258 24 0 chr15 19238722 19238846 -66456908 - MIR SINE MIR -57 205 79 2254 110 3 3 chr15 19239153 19239462 -66456292 - AluSx SINE Alu -3 309 1 224 264 14 42 chr15 19240133 19240205 -66455549 + L2 LINE L2 3244 3313 0 21 57 0 0 chr15 19240280 19240315 -66455439 + AT_rich Low_complexity Low_complexity 1 35 0 955 139 73 0 chr15 19240643 19240794 -66454960 + AluSp SINE Alu 137 298 -15 2373 77 0 0 chr15 19240861 19241147 -66454607 - AluY SINE Alu -25 286 1 1699 171 3 21 chr15 19241533 19241820 -66453934 + AluJb SINE Alu 2 283 -29 2165 125 0 0 chr15 19241820 19242116 -66453638 + AluSg SINE Alu 1 297 -13 2308 112 6 6 chr15 19242302 19242615 -66453139 + AluSq SINE Alu 1 313 0 2000 149 0 7 chr15 19242726 19243034 -66452720 - AluJb SINE Alu -6 306 1 721 117 0 0 chr15 19243943 19244046 -66451708 + AluSg/x SINE Alu 199 301 -9 215 328 0 16 chr15 19244110 19244174 -66451580 - MIR SINE MIR -130 78 16 739 307 119 32 chr15 19244400 19244837 -66450917 - L2 LINE L2 -4 3309 2835 2087 135 0 7 chr15 19245101 19245398 -66450356 + AluSx SINE Alu 3 297 -15 1683 199 17 0 chr15 19245435 19245737 -66450017 - AluJo SINE Alu -5 307 1 2359 80 7 7 chr15 19246059 19246361 -66449393 + AluSc SINE Alu 1 302 -7 222 269 92 50 chr15 19246394 19246513 -66449241 - MIR3 SINE MIR -31 177 54 1629 59 31 9 chr15 19246885 19247107 -66448647 - L1PA5 LINE L1 0 6154 5928 2443 81 7 3 chr15 19247115 19247425 -66448329 - AluSp SINE Alu -2 311 1 199 262 16 33 chr15 19247681 19247742 -66448012 - L2 LINE L2 -8 3305 3246 397 240 133 33 chr15 19248133 19248283 -66447471 - L1MEc LINE L1 -1985 4441 4277 233 29 114 0 chr15 19248283 19248318 -66447436 - MER5C DNA MER1_type -4 320 282 1260 173 0 23 chr15 19248327 19248541 -66447213 - AluJo SINE Alu -19 293 85 541 155 130 6 chr15 19248541 19248702 -66447052 - MER5C DNA MER1_type -26 298 118 2268 120 3 0 chr15 19248709 19249017 -66446737 - AluSx SINE Alu -3 309 1 1529 108 38 46 chr15 19249036 19249276 -66446478 - AluSg SINE Alu -31 279 42 892 243 23 0 chr15 19249278 19249537 -66446217 - L1MEc LINE L1 -3113 3313 3049 7150 123 41 14 chr15 19249555 19249733 -66446021 - Tigger1 DNA MER2_type 0 2418 2246 2450 75 0 0 chr15 19249733 19250027 -66445727 + AluY SINE Alu 1 294 -17 7150 123 41 14 chr15 19250027 19251085 -66444669 - Tigger1 DNA MER2_type -172 2246 1153 1510 133 90 18 chr15 19251085 19251363 -66444391 - AluJb SINE Alu -14 298 1 7150 123 41 14 chr15 19251363 19251408 -66444346 - Tigger1 DNA MER2_type -1265 1153 1111 410 157 27 0 chr15 19251406 19251480 -66444274 + AluS SINE Alu 8 70 -233 * 1314 124 0 0 chr15 19251594 19251814 -66443940 + AluSq SINE Alu 108 327 0 6088 126 30 3 chr15 19251816 19252739 -66443015 - Tigger1 DNA MER2_type -1300 1118 171 1239 278 50 24 chr15 19252749 19253558 -66442196 - L1MEc LINE L1 -3398 3028 2234 2095 127 0 0 chr15 19253772 19254071 -66441683 - AluSx SINE Alu -13 299 1 302 265 72 0 chr15 19254075 19254210 -66441544 - L1M2 LINE L1 -4338 2089 1538 361 298 137 18 chr15 19254212 19254380 -66441374 - L1MEd LINE L1 -4910 1474 1287 710 167 0 9 chr15 19254517 19254631 -66441123 - FLAM_A SINE Alu -16 126 14 451 206 50 44 chr15 19254632 19254643 -66441111 - L1MEd LINE L1 -5034 1338 1329 2164 102 0 0 chr15 19254643 19254936 -66440818 - AluSg SINE Alu -17 293 1 451 206 50 44 chr15 19254936 19255104 -66440650 - L1MEd LINE L1 -5043 1329 1158 1819 137 7 17 chr15 19255171 19255471 -66440283 - AluSq SINE Alu -16 297 1 2183 93 13 0 chr15 19255471 19255771 -66439983 - AluSp SINE Alu -9 304 1 239 352 70 39 chr15 19256012 19256242 -66439512 + L2 LINE L2 2963 3199 -73 181 216 39 20 chr15 19256261 19256312 -66439442 + MIR SINE MIR 141 192 -70 252 303 204 23 chr15 19256347 19256479 -66439275 + L2 LINE L2 3113 3268 -4 270 216 81 14 chr15 19257517 19257591 -66438163 + L3b LINE CR1 1362 1440 -143 206 83 56 0 chr15 19257759 19257795 -66437959 + A-rich Low_complexity Low_complexity 4 41 0 1910 136 3 10 chr15 19258277 19258586 -66437168 - AluSx SINE Alu -5 307 1 994 247 129 57 chr15 19258981 19260043 -66435711 + L1ME1 LINE L1 1317 2607 -3956 * 5861 147 36 30 chr15 19260015 19260608 -66435146 + L1PB1 LINE L1 4353 4941 -1446 2222 87 3 3 chr15 19260608 19260906 -66434848 + AluSx SINE Alu 1 298 -14 5861 147 36 30 chr15 19260906 19261683 -66434071 + L1PB1 LINE L1 4941 5736 -651 1662 125 87 3 chr15 19261683 19261971 -66433783 + AluSx SINE Alu 1 312 0 5861 147 36 30 chr15 19261971 19262626 -66433128 + L1PB1 LINE L1 5736 6386 -1 1393 210 55 31 chr15 19262621 19262682 -66433072 + L1ME1 LINE L1 2540 2598 -3784 * 2187 106 0 10 chr15 19262682 19262983 -66432771 + AluSq SINE Alu 1 298 -15 1393 210 55 31 chr15 19262983 19263340 -66432414 + L1ME1 LINE L1 2598 2968 -3414 2692 201 86 47 chr15 19263345 19263761 -66431993 + L1ME1 LINE L1 4984 5382 -1020 1714 154 10 17 chr15 19263761 19263896 -66431858 - AluJb SINE Alu -21 291 157 270 0 0 0 chr15 19263896 19263926 -66431828 + (TG)n Simple_repeat Simple_repeat 2 31 0 1714 154 10 17 chr15 19263926 19264083 -66431671 - AluJb SINE Alu -155 157 1 2051 130 0 3 chr15 19264091 19264391 -66431363 - AluSx SINE Alu -13 299 1 2692 201 86 47 chr15 19264391 19264438 -66431316 + L1ME1 LINE L1 5388 5432 -970 1959 137 10 3 chr15 19264438 19264745 -66431009 + AluSx SINE Alu 1 309 -3 2692 201 86 47 chr15 19264745 19265121 -66430633 + L1ME1 LINE L1 5432 5792 -610 1926 132 7 3 chr15 19265121 19265431 -66430323 - AluY SINE Alu 0 311 1 2692 201 86 47 chr15 19265431 19265850 -66429904 + L1ME1 LINE L1 5792 6288 -114 2182 104 3 3 chr15 19265895 19266203 -66429551 + AluSq SINE Alu 6 313 0 578 177 65 108 chr15 19267009 19267053 -66428701 + MER5B DNA MER1_type 1 45 -133 1430 176 60 25 chr15 19267053 19267215 -66428539 - AluJo SINE Alu -18 294 116 231 36 0 0 chr15 19267215 19267243 -66428511 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1430 176 60 25 chr15 19267243 19267364 -66428390 - AluJo SINE Alu -196 116 1 578 177 65 108 chr15 19267364 19267505 -66428249 + MER5B DNA MER1_type 45 178 0 21 71 0 0 chr15 19267547 19267589 -66428165 + AT_rich Low_complexity Low_complexity 1 42 0 750 133 0 89 chr15 19267622 19267757 -66427997 + FLAM_A SINE Alu 11 133 -9 532 146 0 0 chr15 19269806 19269895 -66425859 - AluJ/FRAM SINE Alu 0 312 224 1579 207 0 10 chr15 19269965 19270274 -66425480 - AluJb SINE Alu -6 306 1 324 0 0 0 chr15 19270397 19270433 -66425321 + (CA)n Simple_repeat Simple_repeat 2 37 0 964 169 38 11 chr15 19270561 19270744 -66425010 - MER5A DNA MER1_type -1 188 1 207 265 20 0 chr15 19271796 19271845 -66423909 - L2 LINE L2 -84 3229 3180 207 336 26 17 chr15 19272238 19272354 -66423400 - L2 LINE L2 -589 2725 2609 2083 136 0 0 chr15 19272413 19272722 -66423032 - AluSx SINE Alu -3 309 1 2307 90 0 0 chr15 19272783 19273084 -66422670 - AluSg SINE Alu -3 307 7 1988 116 14 3 chr15 19273092 19273384 -66422370 - AluSq SINE Alu -17 296 2 182 339 36 0 chr15 19273659 19273715 -66422039 + MIR SINE MIR 40 97 -165 294 130 0 0 chr15 19274475 19274529 -66421225 - L1ME4a LINE L1 -1 6120 6067 240 275 147 18 chr15 19275131 19275240 -66420514 + MIR SINE MIR 23 145 -63 2178 138 0 0 chr15 19275375 19275686 -66420068 + AluSq SINE Alu 1 311 -2 2082 119 0 19 chr15 19276734 19276894 -66418860 - AluSx SINE Alu -6 306 153 3402 103 34 16 chr15 19276894 19277398 -66418356 - LTR10D LTR ERV1 0 513 1 2082 119 0 19 chr15 19277398 19277549 -66418205 - AluSx SINE Alu -159 153 1 191 30 0 61 chr15 19277747 19277780 -66417974 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2219 104 0 0 chr15 19278423 19278722 -66417032 + AluSx SINE Alu 1 299 -13 2179 116 3 0 chr15 19278727 19279037 -66416717 + AluSq SINE Alu 1 311 -2 514 316 50 9 chr15 19279078 19279296 -66416458 + MIR SINE MIR 24 250 -12 432 217 237 7 chr15 19280792 19280944 -66414810 + MIR SINE MIR 76 262 0 190 222 19 56 chr15 19281194 19281248 -66414506 + L2 LINE L2 3258 3309 -4 1988 105 0 45 chr15 19282578 19282891 -66412863 + AluSc SINE Alu 1 299 -10 376 303 76 17 chr15 19283218 19283398 -66412356 + MIR SINE MIR 8 203 -37 1261 183 23 5 chr15 19285240 19285459 -66410295 - MER58A DNA MER1_type 0 224 2 2194 112 0 0 chr15 19285925 19286221 -66409533 + AluSx SINE Alu 1 296 -16 316 221 84 69 chr15 19286272 19286403 -66409351 - L1MC5 LINE L1 -121 7840 7708 256 316 42 0 chr15 19288732 19288827 -66406927 + L2 LINE L2 3162 3260 -12 228 264 70 97 chr15 19288887 19289519 -66406235 - L1MC4 LINE L1 -2 8040 7292 204 338 0 0 chr15 19291020 19291091 -66404663 + (CCCCAG)n Simple_repeat Simple_repeat 1 71 0 644 311 184 33 chr15 19301672 19302629 -66393125 - L2 LINE L2 -1 3312 2206 260 200 21 100 chr15 19302777 19302886 -66392868 - L1MC4a LINE L1 -1889 5919 5822 767 189 0 0 chr15 19302886 19303008 -66392746 - FLAM_C SINE Alu -11 122 1 260 200 21 100 chr15 19303008 19303038 -66392716 - L1MC4a LINE L1 -1986 5822 5791 2024 162 26 0 chr15 19303126 19303478 -66392276 + MER46B DNA MER2_type 1 236 0 1266 273 173 18 chr15 19303588 19304500 -66391254 - L1MC4a LINE L1 -753 5393 4885 351 120 53 53 chr15 19304642 19304717 -66391037 - L1MA6 LINE L1 0 7260 7186 5761 194 53 13 chr15 19304844 19305130 -66390624 - L1MA6 LINE L1 -68 7192 6919 2474 61 3 0 chr15 19305130 19305440 -66390314 - AluY SINE Alu 0 311 1 1959 139 0 0 chr15 19305443 19305737 -66390017 - AluSx SINE Alu -1 311 18 5761 194 53 13 chr15 19305737 19307295 -66388459 - L1MA6 LINE L1 -342 6918 5266 651 160 19 0 chr15 19307295 19307401 -66388353 + LTR59 LTR ERV1 1 108 -489 2070 112 7 7 chr15 19307421 19307725 -66388029 + AluSg SINE Alu 1 304 -6 1114 157 0 0 chr15 19307725 19307903 -66387851 + LTR59 LTR ERV1 85 262 -335 2255 96 0 0 chr15 19307909 19308210 -66387544 - AluSg SINE Alu -9 301 1 2097 192 7 7 chr15 19308210 19308653 -66387101 - L1MA6 LINE L1 -4385 2721 2279 787 179 0 8 chr15 19308679 19308802 -66386952 - FLAM_C SINE Alu -20 123 2 3424 241 46 86 chr15 19308803 19309059 -66386695 - L1MA6 LINE L1 -4809 2297 2032 2043 112 0 37 chr15 19309059 19309381 -66386373 - AluSg SINE Alu 0 310 1 3424 241 46 86 chr15 19309381 19309621 -66386133 - L1MA6 LINE L1 -5074 2032 1784 2300 70 0 10 chr15 19309621 19309919 -66385835 - AluSq SINE Alu -18 295 1 3424 241 46 86 chr15 19309919 19311117 -66384637 - L1MA6 LINE L1 -5322 1784 6 1544 166 10 28 chr15 19311152 19311442 -66384312 - AluSx SINE Alu -27 285 1 1831 186 0 6 chr15 19311444 19311756 -66383998 - AluSx SINE Alu -2 310 1 248 235 77 33 chr15 19311904 19312087 -66383667 - L1 LINE L1 -1658 4488 4298 2125 95 10 7 chr15 19312157 19312453 -66383301 - AluSx SINE Alu -15 297 1 261 243 116 64 chr15 19312611 19312784 -66382970 - L1 LINE L1 -2309 3837 3656 267 248 28 28 chr15 19313002 19313111 -66382643 + L1P3 LINE L1 5696 5804 -368 1667 113 0 8 chr15 19313172 19313420 -66382334 - AluSg SINE Alu -11 299 54 1415 175 77 0 chr15 19313595 19313869 -66381885 + AluJb SINE Alu 1 295 -17 896 240 18 22 chr15 19313994 19314219 -66381535 + MER58A DNA MER1_type 1 224 0 354 216 62 50 chr15 19314275 19314399 -66381355 - L1MC4a LINE L1 -257 7738 7617 510 188 30 0 chr15 19314399 19314500 -66381254 - U13 snRNA snRNA 0 104 1 354 216 62 50 chr15 19314500 19314581 -66381173 - L1MC4a LINE L1 -378 7617 7354 432 169 56 0 chr15 19314584 19314673 -66381081 + MER53 DNA DNA 2 95 -94 1542 218 66 66 chr15 19314685 19314821 -66380933 - L1MC4a LINE L1 -451 7357 7222 1382 175 43 14 chr15 19314821 19315101 -66380653 + AluJb SINE Alu 1 288 -24 1542 218 66 66 chr15 19315101 19315112 -66380642 - L1MC4a LINE L1 -586 7222 7212 1951 108 0 0 chr15 19315112 19315389 -66380365 + AluSg SINE Alu 1 277 -33 1542 218 66 66 chr15 19315389 19315765 -66379989 - L1MC4a LINE L1 -596 7212 6830 1791 132 10 16 chr15 19315765 19316069 -66379685 - AluJb SINE Alu -10 302 1 1542 218 66 66 chr15 19316069 19316088 -66379666 - L1MC4a LINE L1 -977 6831 6813 1219 139 130 9 chr15 19316091 19316337 -66379417 - L1MB4 LINE L1 -50 6130 5855 921 234 67 67 chr15 19316337 19316598 -66379156 - MLT1C LTR MaLR 0 467 204 216 0 0 0 chr15 19316598 19316622 -66379132 + (TC)n Simple_repeat Simple_repeat 2 25 0 921 234 67 67 chr15 19316622 19316642 -66379112 - MLT1C LTR MaLR -262 205 186 626 220 24 42 chr15 19316674 19316842 -66378912 - FRAM SINE Alu -4 172 8 2329 76 0 3 chr15 19316847 19317148 -66378606 - AluSx SINE Alu -12 300 1 735 202 40 17 chr15 19317156 19317329 -66378425 - MLT1C LTR MaLR -290 177 1 6878 201 85 33 chr15 19317331 19317772 -66377982 - L1MB4 LINE L1 -327 5857 5440 765 0 89 18 chr15 19317772 19317940 -66377814 + (TA)n Simple_repeat Simple_repeat 1 180 0 6878 201 85 33 chr15 19317940 19318555 -66377199 - L1MB4 LINE L1 -744 5440 4858 712 167 0 0 chr15 19318555 19318669 -66377085 - FLAM_C SINE Alu -19 114 1 6878 201 85 33 chr15 19318669 19319896 -66375858 - L1MB4 LINE L1 -1326 4858 3434 2334 52 0 13 chr15 19319896 19320203 -66375551 - AluY SINE Alu -8 303 1 6878 201 85 33 chr15 19320203 19320325 -66375429 - L1MB4 LINE L1 -2750 3434 3320 295 230 115 30 chr15 19320293 19320458 -66375296 - L1MB4 LINE L1 -3092 3054 2876 * 357 170 74 0 chr15 19320476 19320562 -66375192 - FLAM_A SINE Alu -49 84 18 375 298 12 71 chr15 19320568 19320736 -66375018 - L1 LINE L1 -1085 5061 4904 392 310 122 48 chr15 19320744 19321218 -66374536 - L2 LINE L2 -1064 2250 1742 821 155 0 62 chr15 19321235 19321358 -66374396 + AluJb SINE Alu 1 113 -199 1936 74 56 11 chr15 19321358 19321643 -66374111 - AluSx SINE Alu -14 298 1 821 155 0 62 chr15 19321643 19321680 -66374074 + AluJb SINE Alu 113 151 -161 908 150 0 0 chr15 19323040 19323173 -66372581 + FLAM_C SINE Alu 1 133 0 1884 138 3 10 chr15 19323178 19323476 -66372278 + AluJb SINE Alu 1 296 -16 2206 85 3 19 chr15 19327188 19327495 -66368259 + AluSx SINE Alu 1 302 -10 602 253 44 16 chr15 19327587 19327769 -66367985 - MER5A DNA MER1_type -2 187 1 1782 138 14 14 chr15 19328165 19328462 -66367292 - AluJb SINE Alu -15 297 1 712 203 20 34 chr15 19328806 19328954 -66366800 - FRAM SINE Alu -14 162 17 1834 119 4 14 chr15 19329569 19329847 -66365907 - AluSx SINE Alu -37 275 1 1933 114 52 0 chr15 19331548 19331837 -66363917 + AluSg SINE Alu 1 304 -6 190 294 55 28 chr15 19332672 19332781 -66362973 - L3b LINE CR1 -316 1267 1156 887 231 20 25 chr15 19332805 19333004 -66362750 - MER58A DNA MER1_type -26 198 1 217 256 22 44 chr15 19334371 19334461 -66361293 + GA-rich Low_complexity Low_complexity 1 88 0 236 318 164 9 chr15 19337815 19337925 -66357829 - MIR SINE MIR -122 140 14 2166 91 7 7 chr15 19339115 19339411 -66356343 - AluSq SINE Alu -17 296 1 1385 163 26 64 chr15 19340442 19340755 -66354999 - AluJb SINE Alu -11 301 1 1247 132 66 31 chr15 19343639 19343867 -66351887 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr15 19344419 19344502 -66351252 + L2 LINE L2 3227 3310 -3 769 194 157 8 chr15 19345118 19345366 -66350388 - MER33 DNA MER1_type -32 292 8 2215 141 21 24 chr15 19345600 19345976 -66349778 + THE1C LTR MaLR 1 375 0 11190 100 12 27 chr15 19345976 19347581 -66348173 + THE1C-int LTR MaLR 1 1580 0 2140 136 24 27 chr15 19347581 19347957 -66347797 + THE1C LTR MaLR 1 375 0 348 146 10 126 chr15 19348278 19348381 -66347373 - L1MB7 LINE L1 -19 6165 6075 2039 123 27 0 chr15 19348861 19349161 -66346593 + AluJb SINE Alu 5 312 0 5300 196 125 110 chr15 19349293 19350768 -66344986 - L1MCa LINE L1 -3976 2450 925 2725 7 0 0 chr15 19350768 19351071 -66344683 + AluYa5 SINE Alu 1 303 -8 5300 196 125 110 chr15 19351071 19351995 -66343759 - L1MCa LINE L1 -5501 925 16 2864 135 49 5 chr15 19352084 19352492 -66343262 - MSTB LTR MaLR 0 426 1 8413 174 90 11 chr15 19352492 19354022 -66341732 - MSTB-int LTR MaLR 0 1651 1 375 135 0 0 chr15 19354022 19354070 -66341684 - MSTB LTR MaLR 0 426 379 1379 150 191 24 chr15 19354070 19354364 -66341390 + THE1C LTR MaLR 1 343 -85 2248 145 38 11 chr15 19354373 19354745 -66341009 - MSTB LTR MaLR -44 382 1 319 115 58 0 chr15 19355572 19355624 -66340130 + MLT1C LTR MaLR 380 434 -33 715 196 119 26 chr15 19355940 19356134 -66339620 + L1MA9 LINE L1 6069 6280 -32 25 0 0 0 chr15 19356134 19356159 -66339595 + AT_rich Low_complexity Low_complexity 1 25 0 2132 45 4 0 chr15 19356392 19356639 -66339115 + L1PA4 LINE L1 5908 6155 0 683 46 0 23 chr15 19357371 19357458 -66338296 - L1PA8A LINE L1 -29 6102 6018 188 340 187 10 chr15 19358970 19359179 -66336575 + L2 LINE L2 2836 3081 -191 221 302 0 0 chr15 19359343 19359396 -66336358 + L2 LINE L2 3247 3299 -14 2085 107 4 0 chr15 19360006 19360311 -66335443 + AluSx SINE Alu 1 306 0 295 252 0 137 chr15 19360333 19360355 -66335399 + MIR SINE MIR 40 63 -145 422 251 11 99 chr15 19360355 19360546 -66335208 + MER5B DNA MER1_type 1 174 -4 295 252 0 137 chr15 19360546 19360654 -66335100 + MIR SINE MIR 63 152 -56 893 254 45 35 chr15 19361872 19362131 -66333623 + L1ME LINE L1 683 949 -5121 7947 173 151 39 chr15 19362131 19363709 -66332045 + MER52A LTR ERV1 1 1755 0 893 254 45 35 chr15 19363709 19363851 -66331903 + L1ME LINE L1 949 1088 -4982 2138 125 3 3 chr15 19363898 19364203 -66331551 + AluSq SINE Alu 1 305 -8 198 0 0 0 chr15 19364539 19364561 -66331193 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 260 106 30 chr15 19364586 19365597 -66330157 + L1ME LINE L1 1183 2270 -3991 1788 174 17 0 chr15 19365773 19366066 -66329688 - AluJo SINE Alu -14 298 1 3290 144 39 17 chr15 19366127 19366663 -66329091 - MER44D DNA MER2_type -2 603 1 388 288 76 0 chr15 19366676 19366794 -66328960 - L2 LINE L2 -2 3311 3185 27 62 0 0 chr15 19366985 19367033 -66328721 + AT_rich Low_complexity Low_complexity 1 48 0 2310 102 0 3 chr15 19367455 19367749 -66328005 + AluSg SINE Alu 1 293 -17 2531 48 3 0 chr15 19368081 19368373 -66327381 - AluY SINE Alu -18 293 1 2913 10 0 0 chr15 19368575 19368887 -66326867 - AluYb8 SINE Alu -6 312 1 2221 85 0 39 chr15 19369001 19369306 -66326448 - AluSq SINE Alu -20 293 1 1444 118 90 0 chr15 19369635 19369744 -66326010 - MER30 DNA MER1_type 0 230 132 225 0 0 0 chr15 19369744 19369769 -66325985 + (TG)n Simple_repeat Simple_repeat 2 26 0 1444 118 90 0 chr15 19369769 19369870 -66325884 - MER30 DNA MER1_type -98 132 1 519 207 76 138 chr15 19369951 19370287 -66325467 - MLT1H LTR MaLR -4 545 132 813 187 0 0 chr15 19370287 19370410 -66325344 - FLAM_A SINE Alu -10 123 1 519 207 76 138 chr15 19370410 19370528 -66325226 - MLT1H LTR MaLR -417 132 8 2339 95 6 16 chr15 19370652 19370967 -66324787 - AluSq SINE Alu -1 312 1 554 176 69 29 chr15 19371714 19371843 -66323911 - FLAM_A SINE Alu 0 142 10 416 250 26 7 chr15 19371937 19372110 -66323644 - L1ME3A LINE L1 -189 5975 5801 1382 198 10 54 chr15 19372112 19372426 -66323328 + MLT1D LTR MaLR 1 300 -205 879 189 17 23 chr15 19372428 19372603 -66323151 + FAM SINE Alu 1 174 -11 761 161 244 0 chr15 19372628 19372796 -66322958 + MLT1D LTR MaLR 291 499 -6 781 246 18 26 chr15 19372818 19373046 -66322708 - L1ME3A LINE L1 -380 5790 5565 1688 188 18 0 chr15 19373250 19373532 -66322222 - AluJo SINE Alu -20 292 6 1619 174 10 49 chr15 19373634 19373939 -66321815 - AluJb SINE Alu -19 293 1 375 196 43 0 chr15 19373946 19374038 -66321716 - L1MB3 LINE L1 -1 6182 6087 4453 121 28 40 chr15 19374045 19374693 -66321061 - L1MA4 LINE L1 -286 6014 5371 880 163 0 15 chr15 19374693 19374828 -66320926 - FLAM_C SINE Alu 0 133 1 4453 121 28 40 chr15 19374828 19375238 -66320516 - L1MA4 LINE L1 -929 5371 4958 2338 92 3 0 chr15 19375531 19375824 -66319930 - AluSp SINE Alu -19 294 1 301 262 110 41 chr15 19375827 19375972 -66319782 - MIR SINE MIR -14 248 94 995 202 70 11 chr15 19376089 19376361 -66319393 - AluSp SINE Alu -15 288 1 386 236 122 54 chr15 19376364 19376512 -66319242 - MIR SINE MIR -14 248 91 1554 189 60 0 chr15 19376711 19376992 -66318762 + AluJb SINE Alu 1 298 -14 1945 154 0 7 chr15 19377094 19377393 -66318361 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr15 19377865 19377887 -66317867 + AT_rich Low_complexity Low_complexity 1 22 0 1632 253 75 65 chr15 19378014 19378598 -66317156 - MLT1E LTR MaLR -1 592 3 1845 186 31 0 chr15 19378813 19379163 -66316591 - L1MB3 LINE L1 0 6183 5823 269 41 41 41 chr15 19379192 19379241 -66316513 + AluY SINE Alu 252 300 -1 1762 164 26 7 chr15 19379253 19379557 -66316197 - AluJb SINE Alu -2 310 1 2063 197 16 52 chr15 19379560 19379729 -66316025 - L1MB3 LINE L1 -580 5603 5429 2212 90 3 27 chr15 19379729 19380028 -66315726 - AluSq SINE Alu -20 293 2 2278 98 0 0 chr15 19380037 19380334 -66315420 - AluSx SINE Alu -15 297 1 2063 197 16 52 chr15 19380334 19380637 -66315117 - L1MB3 LINE L1 -762 5421 5109 987 115 8 0 chr15 19380637 19380767 -66314987 - FLAM_A SINE Alu -2 131 1 2063 197 16 52 chr15 19380767 19380803 -66314951 - L1MB3 LINE L1 -1074 5109 5073 180 0 0 0 chr15 19380803 19380823 -66314931 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2063 197 16 52 chr15 19380823 19380893 -66314861 - L1MB3 LINE L1 -1110 5073 5002 2391 84 0 3 chr15 19380893 19381189 -66314565 - AluSx SINE Alu -17 295 1 2063 197 16 52 chr15 19381189 19381404 -66314350 - L1MB3 LINE L1 -1181 5002 4832 248 234 138 56 chr15 19381427 19381531 -66314223 - L1ME4a LINE L1 0 6121 6027 1788 133 10 40 chr15 19381531 19381831 -66313923 - AluSx SINE Alu -21 291 1 248 234 138 56 chr15 19381831 19381957 -66313797 - L1ME4a LINE L1 -94 6027 5872 2226 94 10 3 chr15 19381976 19382275 -66313479 + AluSq SINE Alu 1 301 -12 330 98 0 0 chr15 19382277 19382345 -66313409 - Alu SINE Alu 0 310 243 2137 86 0 47 chr15 19382346 19382516 -66313238 - AluSq SINE Alu -11 302 150 2255 78 10 7 chr15 19382516 19382809 -66312945 - AluSc SINE Alu -15 294 1 2137 86 0 47 chr15 19382809 19382939 -66312815 - AluSq SINE Alu -163 150 16 1654 164 3 21 chr15 19382970 19383257 -66312497 + AluJb SINE Alu 1 282 -30 811 289 66 29 chr15 19383303 19383653 -66312101 - HAL1 LINE L1 0 2507 2145 242 211 0 0 chr15 19383670 19383722 -66312032 - HAL1 LINE L1 -332 2175 2124 1364 153 160 8 chr15 19383727 19383995 -66311759 - AluSg1 SINE Alu 0 309 1 1122 184 0 5 chr15 19384168 19384358 -66311396 - AluJb SINE Alu -121 191 3 378 0 0 0 chr15 19384402 19384444 -66311310 + (TG)n Simple_repeat Simple_repeat 2 43 0 462 242 30 15 chr15 19384444 19384571 -66311183 - HAL1 LINE L1 -2279 228 100 231 224 0 35 chr15 19384575 19384633 -66311121 + L2 LINE L2 3258 3313 0 275 295 13 0 chr15 19384658 19384736 -66311018 - MER117 DNA MER1_type -65 132 54 351 184 257 33 chr15 19385391 19385511 -66310243 - Charlie1 DNA MER1_type -1 2760 2668 2221 92 6 29 chr15 19385511 19385827 -66309927 + AluSg SINE Alu 1 309 -1 351 184 257 33 chr15 19385827 19385858 -66309896 - Charlie1 DNA MER1_type -93 2668 2575 1814 146 3 29 chr15 19385867 19386183 -66309571 - AluJo SINE Alu -4 308 1 663 156 75 96 chr15 19386183 19386328 -66309426 - L1MDa LINE L1 -1106 5434 5292 2108 105 7 11 chr15 19386328 19386644 -66309110 - AluSx SINE Alu 0 315 1 663 156 75 96 chr15 19386644 19386696 -66309058 - L1MDa LINE L1 -1248 5292 5240 * 934 130 14 0 chr15 19386693 19386839 -66308915 + L1MB7 LINE L1 5932 6079 -105 2486 74 0 0 chr15 19386851 19387148 -66308606 + AluY SINE Alu 1 297 -14 1100 153 6 6 chr15 19387171 19387347 -66308407 - L1PA15 LINE L1 0 6165 5990 616 249 72 9 chr15 19387357 19387578 -66308176 - L1MDa LINE L1 -1333 5207 4973 1803 255 79 14 chr15 19387597 19387918 -66307836 - L1MDa LINE L1 -2128 4412 4113 1762 179 3 7 chr15 19387918 19388214 -66307540 - AluJb SINE Alu -13 299 5 1803 255 79 14 chr15 19388214 19388371 -66307383 - L1MDa LINE L1 -2427 4113 3968 2628 118 14 11 chr15 19388371 19388734 -66307020 - THE1B LTR MaLR 0 364 1 1803 255 79 14 chr15 19388734 19389141 -66306613 - L1MDa LINE L1 -2572 3968 3437 39 22 0 0 chr15 19389150 19389196 -66306558 + AT_rich Low_complexity Low_complexity 1 46 0 1485 177 36 18 chr15 19389196 19389473 -66306281 - AluJo SINE Alu -30 282 1 436 187 106 0 chr15 19389637 19389760 -66305994 - L1MDa LINE L1 -3135 3405 3270 2321 106 3 3 chr15 19389786 19390098 -66305656 - AluSx SINE Alu 0 312 1 1984 155 7 0 chr15 19390098 19390401 -66305353 - AluJo SINE Alu -6 306 1 669 235 12 18 chr15 19390401 19390571 -66305183 - MER58A DNA MER1_type -11 213 45 588 218 60 87 chr15 19390586 19390852 -66304902 - L1MDa LINE L1 -3274 3266 3008 1690 212 94 118 chr15 19390868 19391352 -66304402 - MER21B LTR ERV1 -124 739 245 1929 139 20 10 chr15 19391352 19391653 -66304101 + AluJo SINE Alu 1 304 -8 2205 89 0 20 chr15 19391653 19391956 -66303798 + AluSx SINE Alu 1 298 -14 1690 212 94 118 chr15 19391956 19392162 -66303592 - MER21B LTR ERV1 -616 247 65 613 134 28 113 chr15 19392278 19392420 -66303334 - MER21B LTR ERV1 -316 615 406 792 159 89 58 chr15 19392477 19392866 -66302888 - LTR7 LTR ERV1 -7 443 1 345 71 43 100 chr15 19392866 19392936 -66302818 - HERVH LTR ERV1 0 7713 7648 9123 197 46 16 chr15 19393037 19395522 -66300232 - HERVH LTR ERV1 -4908 2805 1 1397 185 115 61 chr15 19395522 19395949 -66299805 - LTR7 LTR ERV1 0 450 1 905 207 88 23 chr15 19395957 19396174 -66299580 - MER21B LTR ERV1 -533 330 100 341 211 10 106 chr15 19396289 19396393 -66299361 - MER21B LTR ERV1 -767 96 3 2985 251 85 64 chr15 19396456 19397311 -66298443 - L1MDa LINE L1 -3538 3002 2166 2371 81 17 0 chr15 19397311 19397608 -66298146 - AluSp SINE Alu -11 302 1 2985 251 85 64 chr15 19397608 19398050 -66297704 - L1MDa LINE L1 -4374 2166 1735 1934 134 0 50 chr15 19398050 19398391 -66297363 - AluSx SINE Alu 0 326 1 2985 251 85 64 chr15 19398391 19398819 -66296935 - L1MDa LINE L1 -4805 1735 1266 2376 91 3 0 chr15 19398819 19399116 -66296638 - AluSg SINE Alu -12 298 1 2985 251 85 64 chr15 19399116 19399388 -66296366 - L1MDa LINE L1 -5274 1266 1001 2211 120 0 3 chr15 19399400 19399708 -66296046 - AluSx SINE Alu -5 307 1 21 0 0 0 chr15 19399766 19399787 -66295967 + AT_rich Low_complexity Low_complexity 1 21 0 233 191 0 0 chr15 19399787 19399834 -66295920 - L1PB1 LINE L1 0 6151 6105 1776 191 0 22 chr15 19400014 19400328 -66295426 + AluJo SINE Alu 1 307 -5 527 277 105 36 chr15 19400571 19400681 -66295073 - L1MC4a LINE L1 -1638 6170 6069 1807 196 0 0 chr15 19400681 19400993 -66294761 - AluJo SINE Alu 0 312 1 527 277 105 36 chr15 19400993 19401016 -66294738 - L1MC4a LINE L1 -1739 6069 6049 979 213 36 41 chr15 19401016 19401237 -66294517 + MER58A DNA MER1_type 5 224 0 527 277 105 36 chr15 19401237 19401434 -66294320 - L1MC4a LINE L1 -1759 6049 5816 828 177 37 0 chr15 19402045 19402209 -66293545 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 19402309 19402361 -66293393 + Alu SINE Alu 257 308 0 2112 139 0 0 chr15 19402404 19402713 -66293041 - AluSc SINE Alu 0 309 1 190 313 80 54 chr15 19402982 19403094 -66292660 + MER5A DNA MER1_type 71 185 -4 1941 221 36 34 chr15 19403225 19403362 -66292392 - L1M4 LINE L1 -977 5169 5034 2446 73 0 0 chr15 19403362 19403664 -66292090 - AluY SINE Alu -9 302 1 1941 221 36 34 chr15 19403664 19404052 -66291702 - L1M4 LINE L1 -1112 5034 4643 204 175 25 0 chr15 19404054 19404094 -66291660 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1267 194 135 12 chr15 19404099 19404351 -66291403 - AluJo SINE Alu -18 284 2 273 156 31 47 chr15 19404352 19404416 -66291338 - L1M4 LINE L1 -1491 4655 4593 2058 79 12 0 chr15 19404416 19404670 -66291084 - AluSq SINE Alu -56 257 1 354 252 102 0 chr15 19404735 19404862 -66290892 - L1MC4a LINE L1 -1881 5927 5788 2153 155 3 23 chr15 19405077 19405426 -66290328 + MER2 DNA MER2_type 2 343 -1 2523 69 3 0 chr15 19406713 19407016 -66288738 - AluSc SINE Alu -5 304 1 2267 100 6 6 chr15 19408344 19408655 -66287099 - AluY SINE Alu 0 311 1 195 69 0 0 chr15 19408735 19408764 -66286990 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1619 186 7 11 chr15 19408764 19409043 -66286711 - AluJo SINE Alu -32 280 3 2380 68 0 7 chr15 19409423 19409717 -66286037 - AluY SINE Alu -19 292 1 2267 65 0 71 chr15 19409936 19410258 -66285496 - AluSg SINE Alu -11 299 1 1102 289 179 22 chr15 19410284 19410399 -66285355 + L2 LINE L2 2346 2442 -871 2132 128 0 3 chr15 19410399 19410695 -66285059 - AluSx SINE Alu -17 295 1 1102 289 179 22 chr15 19410695 19411427 -66284327 + L2 LINE L2 2442 3311 -2 198 0 0 0 chr15 19411593 19411615 -66284139 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2089 121 0 0 chr15 19411618 19411900 -66283854 - AluSx SINE Alu -30 282 1 188 83 0 28 chr15 19411962 19411998 -66283756 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 11403 27 3 2 chr15 19411998 19414061 -66281693 - L1PA3 LINE L1 -24 6131 4066 1999 108 49 11 chr15 19414260 19414547 -66281207 - AluSx SINE Alu -10 302 5 2267 87 7 10 chr15 19414994 19415303 -66280451 + AluSq SINE Alu 4 311 -2 24 0 0 0 chr15 19415441 19415465 -66280289 + AT_rich Low_complexity Low_complexity 1 24 0 1813 127 38 4 chr15 19415598 19415865 -66279889 - AluSx SINE Alu -13 299 24 2374 86 0 10 chr15 19416526 19416828 -66278926 + AluSx SINE Alu 1 299 -13 742 307 113 35 chr15 19417237 19417773 -66277981 - L2 LINE L2 -55 3258 2684 2522 62 3 3 chr15 19417799 19418104 -66277650 - AluSp SINE Alu -6 307 3 1068 252 90 59 chr15 19419358 19419504 -66276250 + LTR33A LTR ERVL 33 173 -350 2302 101 0 0 chr15 19419504 19419802 -66275952 + AluSx SINE Alu 1 298 -14 1068 252 90 59 chr15 19419802 19420131 -66275623 + LTR33A LTR ERVL 173 523 0 220 253 0 40 chr15 19420137 19420212 -66275542 + A-rich Low_complexity Low_complexity 5 76 0 1845 121 59 38 chr15 19420247 19420536 -66275218 + AluSg SINE Alu 1 295 -15 552 101 0 0 chr15 19420561 19420630 -66275124 + AluS SINE Alu 1 69 -244 1904 116 0 63 chr15 19420996 19421299 -66274455 + AluSx SINE Alu 1 284 -28 1123 168 24 0 chr15 19421334 19421501 -66274253 + FAM SINE Alu 1 171 -4 426 277 106 67 chr15 19421507 19422252 -66273502 + L1ME4a LINE L1 5042 5752 -369 2527 57 0 3 chr15 19422252 19422552 -66273202 + AluY SINE Alu 1 299 -12 426 277 106 67 chr15 19422552 19422630 -66273124 + L1ME4a LINE L1 5752 5825 -296 2100 124 3 0 chr15 19423221 19423512 -66272242 - AluSx SINE Alu -20 292 1 9333 28 3 237 chr15 19424161 19425961 -66269793 + SVA Other Other 1 1378 -8 21 36 0 0 chr15 19426852 19426880 -66268874 + AT_rich Low_complexity Low_complexity 1 28 0 1830 142 0 0 chr15 19426890 19427158 -66268596 - AluSx SINE Alu -18 294 27 24 32 0 0 chr15 19427766 19427797 -66267957 + AT_rich Low_complexity Low_complexity 1 31 0 1705 119 4 0 chr15 19427859 19428086 -66267668 + AluSx SINE Alu 25 252 -60 268 215 47 9 chr15 19428279 19428386 -66267368 + (TA)n Simple_repeat Simple_repeat 1 111 0 898 145 0 43 chr15 19428761 19428899 -66266855 - FLAM_C SINE Alu 0 133 2 180 0 0 0 chr15 19428909 19428929 -66266825 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6904 66 7 3 chr15 19428930 19429986 -66265768 - L1PA7 LINE L1 -36 6118 5060 5892 86 8 0 chr15 19429985 19430787 -66264967 + L1PA7 LINE L1 4252 5059 -1087 * 2089 128 27 0 chr15 19431094 19431390 -66264364 - AluSq SINE Alu -9 304 1 187 347 69 14 chr15 19431676 19431748 -66264006 - L3b LINE CR1 -24 1559 1484 192 310 97 18 chr15 19431754 19431867 -66263887 + MIR SINE MIR 61 182 -80 364 222 0 22 chr15 19432115 19432205 -66263549 - L1ME2 LINE L1 -1 6163 6076 5893 148 23 22 chr15 19432223 19432733 -66263021 - L1MC1 LINE L1 0 6333 5820 2248 121 0 6 chr15 19432733 19433046 -66262708 - AluSx SINE Alu -1 311 1 5893 148 23 22 chr15 19433046 19433545 -66262209 - L1MC1 LINE L1 -513 5820 5323 911 159 0 0 chr15 19433546 19433672 -66262082 - FLAM_C SINE Alu -6 127 2 1498 212 10 10 chr15 19433683 19433971 -66261783 - AluSx SINE Alu -13 289 2 1988 139 3 13 chr15 19434328 19434631 -66261123 - AluSx SINE Alu -12 300 1 25 0 0 0 chr15 19434865 19434890 -66260864 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr15 19436066 19436091 -66259663 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1616 128 47 12 chr15 19436094 19436352 -66259402 - AluJo SINE Alu -30 282 16 594 186 17 17 chr15 19436362 19436480 -66259274 - MLT1F LTR MaLR -50 492 375 324 0 0 0 chr15 19439087 19439123 -66256631 + (TG)n Simple_repeat Simple_repeat 2 37 0 1653 60 5 41 chr15 19439334 19439552 -66256202 + AluY SINE Alu 1 210 -101 755 224 107 15 chr15 19439586 19439849 -66255905 - L1MC5 LINE L1 -30 7931 7645 2424 192 73 86 chr15 19439925 19440811 -66254943 - L1MC5 LINE L1 -264 7697 6823 23 0 0 0 chr15 19440879 19440902 -66254852 + AT_rich Low_complexity Low_complexity 1 23 0 666 249 166 116 chr15 19441391 19441684 -66254070 - MLT1H1 LTR MaLR 0 555 259 2393 91 3 0 chr15 19441684 19441991 -66253763 - AluSx SINE Alu -4 308 1 666 249 166 116 chr15 19441991 19442264 -66253490 - MLT1H1 LTR MaLR -296 259 1 2330 85 7 0 chr15 19442617 19442910 -66252844 - AluSg SINE Alu -15 295 1 2301 109 0 3 chr15 19442999 19443312 -66252442 + AluSx SINE Alu 1 312 0 2157 121 0 7 chr15 19444161 19444466 -66251288 - AluSx SINE Alu -9 303 1 26 88 0 0 chr15 19444720 19444788 -66250966 + AT_rich Low_complexity Low_complexity 1 68 0 2316 108 0 0 chr15 19446739 19447035 -66248719 - AluSc SINE Alu -13 296 1 1990 144 13 3 chr15 19447415 19447721 -66248033 - AluSx SINE Alu -3 309 1 1933 150 0 3 chr15 19448227 19448520 -66247234 + AluSx SINE Alu 1 292 -20 1750 146 7 21 chr15 19448714 19449041 -66246713 - AluJo SINE Alu 0 323 1 1611 127 45 15 chr15 19449078 19449345 -66246409 - L1MC1 LINE L1 0 6333 6059 479 114 29 0 chr15 19449353 19449423 -66246331 - Tigger5 DNA MER2_type -1 2322 2251 320 152 0 0 chr15 19449400 19449446 -66246308 - Tigger5 DNA MER2_type -2276 47 2 * 3502 174 111 1 chr15 19449451 19450199 -66245555 - L1MC3 LINE L1 -743 5683 5501 3351 193 66 36 chr15 19450195 19450340 -66245414 - L1MC3 LINE L1 -2953 3473 3334 * 2665 42 0 6 chr15 19450340 19450653 -66245101 - AluY SINE Alu 0 311 1 3351 193 66 36 chr15 19450653 19451313 -66244441 - L1MC3 LINE L1 -3092 3334 2696 626 233 25 0 chr15 19451313 19451458 -66244296 - FLAM_A SINE Alu 0 148 1 3351 193 66 36 chr15 19451458 19451766 -66243988 - L1MC3 LINE L1 -3730 2696 2399 1653 212 0 6 chr15 19451766 19452077 -66243677 - AluJo SINE Alu -3 309 1 3351 193 66 36 chr15 19452077 19452125 -66243629 - L1MC3 LINE L1 -4027 2399 2354 1565 167 25 65 chr15 19452125 19452449 -66243305 - AluSx SINE Alu -1 311 1 3351 193 66 36 chr15 19452449 19453012 -66242742 - L1MC3 LINE L1 -4072 2354 1600 2128 126 3 0 chr15 19453012 19453313 -66242441 - AluSp SINE Alu -11 302 1 3351 193 66 36 chr15 19453313 19453356 -66242398 - L1MC3 LINE L1 -4826 1600 1560 * 10945 206 16 25 chr15 19453341 19454710 -66241044 - L1 LINE L1 -812 5334 3954 2203 110 3 0 chr15 19454710 19455009 -66240745 - AluSp SINE Alu -13 300 1 10945 206 16 25 chr15 19455009 19456657 -66239097 - L1 LINE L1 -2192 3954 2334 1912 95 60 73 chr15 19456667 19456982 -66238772 + AluSq SINE Alu 1 311 -2 323 157 129 0 chr15 19456985 19457055 -66238699 - AluJo SINE Alu -160 142 64 507 182 11 0 chr15 19457062 19457150 -66238604 - AluJo SINE Alu -223 89 1 180 0 0 0 chr15 19457155 19457175 -66238579 + (TTG)n Simple_repeat Simple_repeat 2 21 0 263 78 0 109 chr15 19457175 19457239 -66238515 - L1MCa LINE L1 -4911 1515 1459 6020 166 43 78 chr15 19457245 19458204 -66237550 - L1MCa LINE L1 -4940 1486 600 1861 158 0 23 chr15 19458204 19458507 -66237247 + AluJb SINE Alu 1 296 -16 6020 166 43 78 chr15 19458507 19459085 -66236669 - L1MCa LINE L1 -5826 600 3 348 197 89 94 chr15 19459077 19459290 -66236464 - L1MC5 LINE L1 -35 7926 7715 * 234 0 0 0 chr15 19459507 19459533 -66236221 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1811 141 50 0 chr15 19459538 19459815 -66235939 - AluSx SINE Alu -21 291 1 1873 177 0 13 chr15 19460077 19460382 -66235372 - AluJo SINE Alu -11 301 1 980 118 56 36 chr15 19460385 19460538 -66235216 - L1MC2 LINE L1 -17 6327 6168 2135 131 3 0 chr15 19460538 19460835 -66234919 - AluSx SINE Alu -13 299 2 980 118 56 36 chr15 19460835 19460876 -66234878 - L1MC2 LINE L1 -176 6168 6129 405 180 79 34 chr15 19460904 19460993 -66234761 - FLAM_C SINE Alu -16 127 35 594 269 40 37 chr15 19461038 19461387 -66234367 - L1MC5 LINE L1 -297 7664 7315 902 231 36 100 chr15 19461412 19461634 -66234120 - L1MC5 LINE L1 -750 7211 6976 2202 54 18 4 chr15 19461634 19461949 -66233805 + AluY SINE Alu 1 319 0 902 231 36 100 chr15 19461949 19462306 -66233448 - L1MC5 LINE L1 -985 6976 6668 869 130 0 8 chr15 19462411 19462542 -66233212 + AluSg/x SINE Alu 172 301 -9 942 179 53 39 chr15 19463028 19463235 -66232519 - MER6B DNA MER2_type 0 210 1 1830 179 0 10 chr15 19463377 19463685 -66232069 + AluJo SINE Alu 1 305 -7 1088 127 0 0 chr15 19463708 19463866 -66231888 - AluSg/x SINE Alu -3 309 152 24 0 0 0 chr15 19464112 19464136 -66231618 + AT_rich Low_complexity Low_complexity 1 24 0 2201 122 3 0 chr15 19465247 19465543 -66230211 + AluSx SINE Alu 1 297 -15 305 237 11 54 chr15 19465906 19465999 -66229755 + L1MC4 LINE L1 6614 6702 -1340 191 316 59 46 chr15 19466125 19466277 -66229477 + L2 LINE L2 2682 2835 -479 2307 78 0 69 chr15 19466339 19466672 -66229082 - AluY SINE Alu -1 310 1 23 0 0 0 chr15 19466958 19466981 -66228773 + AT_rich Low_complexity Low_complexity 1 23 0 458 358 22 19 chr15 19467051 19467367 -66228387 + L1ME LINE L1 21 337 -6203 1578 233 86 10 chr15 19467905 19468534 -66227220 + L1ME LINE L1 916 1548 -4992 1800 193 57 39 chr15 19468543 19468826 -66226928 + L1ME LINE L1 4533 4810 -1730 2398 84 3 0 chr15 19468826 19469122 -66226632 + AluSp SINE Alu 1 297 -16 1800 193 57 39 chr15 19469122 19469403 -66226351 + L1ME LINE L1 4810 5107 -1433 447 151 173 7 chr15 19469421 19469560 -66226194 + L1MA8 LINE L1 6126 6287 -4 812 234 34 24 chr15 19469561 19469770 -66225984 + AluJo SINE Alu 97 307 -5 1972 215 66 11 chr15 19469775 19470480 -66225274 + L1ME LINE L1 5122 5860 -700 1706 207 127 71 chr15 19470480 19471046 -66224708 - MER21B LTR ERV1 -261 602 5 1627 151 16 69 chr15 19471062 19471134 -66224620 - MER2 DNA MER2_type 0 345 271 2073 123 36 0 chr15 19471134 19471435 -66224319 + AluSx SINE Alu 1 312 0 1627 151 16 69 chr15 19471435 19471580 -66224174 - MER2 DNA MER2_type -74 271 120 1748 171 67 6 chr15 19471580 19471907 -66223847 + MER7A DNA MER2_type 2 346 0 1627 151 16 69 chr15 19471907 19471953 -66223801 - MER2 DNA MER2_type -225 120 73 1755 108 115 11 chr15 19471953 19472231 -66223523 - AluSg1 SINE Alu -1 308 2 1627 151 16 69 chr15 19472231 19472329 -66223425 - MER2 DNA MER2_type -272 73 1 313 265 162 0 chr15 19472609 19472726 -66223028 + L2 LINE L2 3147 3282 -31 517 274 240 0 chr15 19472828 19473007 -66222747 + MIR SINE MIR 9 230 -32 1827 160 18 0 chr15 19473054 19473335 -66222419 - AluJb SINE Alu -26 286 1 1250 187 90 162 chr15 19473447 19473833 -66221921 - LTR8A LTR ERV1 0 727 419 2363 95 0 0 chr15 19473833 19474137 -66221617 - AluSg SINE Alu -6 304 1 1250 187 90 162 chr15 19474137 19474498 -66221256 - LTR8A LTR ERV1 -308 419 34 821 146 8 8 chr15 19474880 19475010 -66220744 - FLAM_A SINE Alu -3 130 1 839 141 15 7 chr15 19475420 19475555 -66220199 + AluJo SINE Alu 1 136 -176 2022 133 0 13 chr15 19476105 19476405 -66219349 + AluJb SINE Alu 1 296 -16 204 313 0 0 chr15 19476531 19476579 -66219175 + MER5B DNA MER1_type 130 177 -1 207 236 18 0 chr15 19476929 19476984 -66218770 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 959 219 31 46 chr15 19477589 19477849 -66217905 - MSTD LTR MaLR 0 396 141 5198 129 1 2 chr15 19477853 19478679 -66217075 + L1PA15 LINE L1 5341 6165 0 2088 137 0 0 chr15 19478790 19479082 -66216672 - AluSx SINE Alu -20 292 1 303 28 0 0 chr15 19479226 19479262 -66216492 + (CA)n Simple_repeat Simple_repeat 2 37 0 2164 96 3 0 chr15 19479384 19479689 -66216065 - AluSx SINE Alu 0 307 2 2244 121 3 3 chr15 19479934 19480240 -66215514 - AluSx SINE Alu -6 306 1 2218 104 7 0 chr15 19480240 19480538 -66215216 - AluSx SINE Alu -12 300 1 304 300 9 27 chr15 19480636 19480746 -66215008 - MIR SINE MIR -61 201 94 1242 202 112 78 chr15 19481664 19482420 -66213334 - L1MC5 LINE L1 -36 7925 7238 1185 222 44 103 chr15 19482435 19482727 -66213027 - L1MC5 LINE L1 -740 7221 6913 1589 131 0 0 chr15 19482727 19482948 -66212806 - AluSg/x SINE Alu -18 292 72 1185 222 44 103 chr15 19482948 19483350 -66212404 - L1MC5 LINE L1 -1048 6913 6558 1680 167 31 24 chr15 19483419 19483573 -66212181 - AluJb SINE Alu -17 295 144 261 0 0 0 chr15 19483573 19483602 -66212152 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2167 91 0 14 chr15 19483602 19483888 -66211866 - AluSc SINE Alu -27 282 1 1680 167 31 24 chr15 19483888 19484025 -66211729 - AluJb SINE Alu -167 145 1 448 171 15 141 chr15 19484035 19484234 -66211520 + L1MC5 LINE L1 7730 7903 -58 198 0 0 0 chr15 19484346 19484368 -66211386 + (T)n Simple_repeat Simple_repeat 1 22 0 1389 96 5 5 chr15 19484409 19484617 -66211137 - L1PA14 LINE L1 -10 6151 5944 425 190 13 0 chr15 19484705 19484784 -66210970 - Tigger7 DNA MER2_type 0 2487 2408 1304 176 20 8 chr15 19484788 19485038 -66210716 - Tigger7 DNA MER2_type -2223 264 12 26 82 0 0 chr15 19485235 19485296 -66210458 + AT_rich Low_complexity Low_complexity 1 61 0 358 329 150 0 chr15 19485952 19486119 -66209635 + MIR SINE MIR 20 211 -51 237 344 0 0 chr15 19486190 19486254 -66209500 - MIR SINE MIR 0 262 199 663 163 82 22 chr15 19486255 19486390 -66209364 + FLAM_C SINE Alu 1 143 0 291 184 115 0 chr15 19486404 19486491 -66209263 - MIR SINE MIR -70 192 96 279 79 0 0 chr15 19486563 19486601 -66209153 + (CA)n Simple_repeat Simple_repeat 1 38 0 2240 96 0 0 chr15 19486601 19486892 -66208862 - AluY SINE Alu -20 291 1 50 42 0 0 chr15 19486899 19486970 -66208784 + AT_rich Low_complexity Low_complexity 1 71 0 2292 87 3 7 chr15 19487129 19487427 -66208327 + AluSq SINE Alu 1 297 -16 959 173 6 0 chr15 19487921 19488083 -66207671 + FAM SINE Alu 2 164 -11 2218 105 0 30 chr15 19488879 19489184 -66206570 - AluSg SINE Alu -14 296 1 48 0 0 0 chr15 19490106 19490154 -66205600 + AT_rich Low_complexity Low_complexity 1 48 0 680 195 0 0 chr15 19490523 19490651 -66205103 + MER3 DNA MER1_type 1 128 -81 1940 126 0 14 chr15 19490651 19490962 -66204792 - AluSx SINE Alu 0 310 4 739 221 21 14 chr15 19491283 19491428 -66204326 - FRAM SINE Alu -30 146 1 185 0 40 0 chr15 19491441 19491466 -66204288 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1124 185 19 0 chr15 19491514 19491730 -66204024 - L1PA13 LINE L1 -6 6157 5938 745 207 72 15 chr15 19491871 19492133 -66203621 - L1MD3 LINE L1 -1 7983 6091 2303 146 17 15 chr15 19492135 19492544 -66203210 + MSTB1 LTR MaLR 1 410 -22 1114 81 81 11 chr15 19492544 19492730 -66203024 + MER30 DNA MER1_type 1 199 -31 1090 187 25 22 chr15 19494116 19494403 -66201351 + L1ME1 LINE L1 5149 5426 -740 2435 84 3 3 chr15 19494403 19494713 -66201041 + AluY SINE Alu 1 310 -1 1090 187 25 22 chr15 19494713 19494793 -66200961 + L1ME1 LINE L1 5426 5504 -662 913 156 75 10 chr15 19494790 19494989 -66200765 + L1ME1 LINE L1 5949 6160 -6 * 1301 232 25 71 chr15 19495043 19495334 -66200420 - L1MC4a LINE L1 -1707 6101 5847 1276 168 6 123 chr15 19495334 19495674 -66200080 - AluJb SINE Alu -12 300 1 1301 232 25 71 chr15 19495674 19495942 -66199812 - L1MC4a LINE L1 -1961 5847 5568 234 57 0 0 chr15 19497029 19497064 -66198690 - Alu SINE Alu -5 296 262 1155 64 7 0 chr15 19497065 19497205 -66198549 - AluSc SINE Alu -168 141 1 238 136 0 0 chr15 19497232 19497276 -66198478 - L1ME4a LINE L1 -4 6117 6074 208 135 0 0 chr15 19497432 19497469 -66198285 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 575 258 9 26 chr15 19497489 19497932 -66197822 + CT-rich Low_complexity Low_complexity 1 435 0 344 332 84 0 chr15 19498033 19498232 -66197522 + L1M4 LINE L1 3073 3305 -2841 2403 66 0 3 chr15 19498374 19498677 -66197077 - AluY SINE Alu -9 302 1 304 266 57 32 chr15 19498699 19498823 -66196931 + MIR SINE MIR 47 173 -89 1013 164 0 13 chr15 19498871 19499030 -66196724 + FRAM SINE Alu 1 153 -23 491 257 52 64 chr15 19499048 19499297 -66196457 - L2 LINE L2 -130 3183 2938 249 237 17 17 chr15 19499368 19499427 -66196327 - L2 LINE L2 -497 2817 2759 1906 116 4 4 chr15 19500144 19500168 -66195586 - AluSg SINE Alu 0 310 287 186 43 0 0 chr15 19500168 19500191 -66195563 + (TA)n Simple_repeat Simple_repeat 2 24 0 1906 116 4 4 chr15 19500191 19500442 -66195312 - AluSg SINE Alu -22 288 35 1886 136 0 0 chr15 19500737 19500987 -66194767 + AluSg SINE Alu 38 287 -23 438 114 0 0 chr15 19500987 19501066 -66194688 + (TA)n Simple_repeat Simple_repeat 2 80 0 512 133 8 0 chr15 19501136 19501256 -66194498 + (TA)n Simple_repeat Simple_repeat 1 121 0 1703 199 7 0 chr15 19502532 19502818 -66192936 - AluJo SINE Alu -24 288 1 1553 113 0 5 chr15 19502879 19503100 -66192654 + AluSq SINE Alu 87 306 -7 336 280 72 88 chr15 19503156 19503245 -66192509 - HAL1 LINE L1 -939 1568 1479 1972 124 0 42 chr15 19503245 19503552 -66192202 - AluSx SINE Alu -18 294 1 336 280 72 88 chr15 19503552 19503572 -66192182 - HAL1 LINE L1 -1028 1479 1460 1900 175 7 0 chr15 19503572 19503875 -66191879 - AluJb SINE Alu -7 305 1 336 280 72 88 chr15 19503875 19503957 -66191797 - HAL1 LINE L1 -1047 1460 1379 1050 286 85 66 chr15 19503968 19504952 -66190802 - L1MEd LINE L1 -4865 1254 254 26 50 0 0 chr15 19505176 19505216 -66190538 + AT_rich Low_complexity Low_complexity 1 40 0 1842 171 0 11 chr15 19505825 19506112 -66189642 + AluJb SINE Alu 5 288 -24 21 0 0 0 chr15 19506113 19506134 -66189620 + AT_rich Low_complexity Low_complexity 1 21 0 1341 203 21 28 chr15 19508258 19508548 -66187206 - AluJb SINE Alu -24 288 1 1471 175 16 91 chr15 19509378 19509711 -66186043 + AluJb SINE Alu 1 310 0 198 313 0 0 chr15 19510129 19510177 -66185577 - L2 LINE L2 -246 3067 3020 1579 67 10 0 chr15 19510180 19510375 -66185379 + MER30 DNA MER1_type 1 197 -33 664 318 111 46 chr15 19510378 19510791 -66184963 - L2 LINE L2 -234 3038 2605 2176 122 3 3 chr15 19510830 19511133 -66184621 - AluSx SINE Alu -9 303 1 442 251 55 18 chr15 19511293 19511456 -66184298 - MLT1J2 LTR MaLR -239 211 43 199 302 205 39 chr15 19511523 19511728 -66184026 + L2 LINE L2 2819 3057 -215 193 330 100 0 chr15 19511792 19511892 -66183862 + L2 LINE L2 3171 3280 -33 316 228 89 20 chr15 19511902 19512003 -66183751 + L2 LINE L2 3158 3265 -48 279 259 170 12 chr15 19512520 19512657 -66183097 + MIR SINE MIR 16 183 -61 2220 108 14 0 chr15 19512657 19512952 -66182802 - AluSq SINE Alu -14 299 1 23 33 0 0 chr15 19512974 19513004 -66182750 + AT_rich Low_complexity Low_complexity 1 30 0 1750 152 64 0 chr15 19513083 19513366 -66182388 - AluSx SINE Alu -11 301 1 2299 132 11 17 chr15 19513690 19513955 -66181799 + MER7A DNA MER2_type 1 263 -2775 3594 60 25 9 chr15 19513955 19514392 -66181362 - MLT2A1 LTR ERVL 0 444 1 2299 132 11 17 chr15 19514392 19514475 -66181279 + MER7A DNA MER2_type 263 345 -1 207 0 0 0 chr15 19514521 19514544 -66181210 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 254 262 97 10 chr15 19516880 19516983 -66178771 - L1ME4a LINE L1 -2 6119 6008 1339 166 0 9 chr15 19516992 19517215 -66178539 - AluJb SINE Alu -6 306 86 2212 111 3 10 chr15 19517379 19517685 -66178069 + AluSx SINE Alu 1 304 -8 1099 159 96 23 chr15 19517691 19517735 -66178019 - MER46A DNA MER2_type -2495 236 197 2248 93 0 3 chr15 19517735 19518025 -66177729 - AluY SINE Alu -20 291 3 1099 159 96 23 chr15 19518025 19518200 -66177554 - MER46A DNA MER2_type -2534 197 1 2340 104 0 0 chr15 19518931 19519238 -66176516 + AluSx SINE Alu 1 307 -5 214 234 31 16 chr15 19519284 19519348 -66176406 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 754 223 82 98 chr15 19520472 19520705 -66175049 + L2 LINE L2 1974 2202 -1112 2033 122 14 3 chr15 19520705 19520993 -66174761 - AluSx SINE Alu -21 291 1 754 223 82 98 chr15 19520993 19521064 -66174690 + L2 LINE L2 2202 2273 -1041 243 309 155 72 chr15 19521118 19521251 -66174503 + L2 LINE L2 2551 2704 -610 1616 123 0 0 chr15 19521251 19521471 -66174283 - AluSg/x SINE Alu -9 301 82 243 309 155 72 chr15 19521471 19521518 -66174236 + L2 LINE L2 2704 2746 -568 330 157 29 5 chr15 19521519 19521607 -66174147 + L1MC5 LINE L1 6743 6839 -946 259 219 288 0 chr15 19522048 19522121 -66173633 - L1MC4 LINE L1 -152 7890 7797 183 189 0 0 chr15 19522967 19523020 -66172734 + T-rich Low_complexity Low_complexity 1 53 0 756 162 9 0 chr15 19523069 19523180 -66172574 + FRAM SINE Alu 35 146 -30 2033 114 45 0 chr15 19523257 19523547 -66172207 - AluSq SINE Alu -10 303 1 1034 185 49 0 chr15 19523550 19523712 -66172042 - FAM SINE Alu -5 170 1 473 294 82 6 chr15 19523820 19523990 -66171764 + MER5A DNA MER1_type 7 189 0 242 305 136 40 chr15 19523996 19524120 -66171634 - MIR3 SINE MIR -53 155 20 23 0 0 0 chr15 19524525 19524548 -66171206 + AT_rich Low_complexity Low_complexity 1 23 0 717 186 0 125 chr15 19524714 19524780 -66170974 - LTR41 LTR ERVL -7 766 693 1193 121 24 48 chr15 19524780 19524958 -66170796 - L1MA4 LINE L1 -8 6292 6118 2082 114 17 10 chr15 19524958 19525255 -66170499 - AluSx SINE Alu -13 299 1 1193 121 24 48 chr15 19525255 19525282 -66170472 - L1MA4 LINE L1 -182 6118 6092 717 186 0 125 chr15 19525282 19525463 -66170291 - LTR41 LTR ERVL -80 693 550 301 274 33 104 chr15 19525548 19525760 -66169994 + HAL1b LINE L1 2 198 -1150 2007 128 0 45 chr15 19525797 19525931 -66169823 + AluSg SINE Alu 1 139 -171 2303 85 10 13 chr15 19525931 19526238 -66169516 + AluY SINE Alu 1 306 -5 2007 128 0 45 chr15 19526238 19526415 -66169339 + AluSg SINE Alu 139 298 -12 2032 153 0 3 chr15 19526529 19526837 -66168917 + AluJb SINE Alu 1 307 -5 1054 185 23 23 chr15 19526910 19527126 -66168628 - L1 LINE L1 -1083 5063 4848 587 208 0 0 chr15 19527133 19527234 -66168520 + L1MA8 LINE L1 5679 5779 -533 207 0 0 0 chr15 19527237 19527260 -66168494 + (TG)n Simple_repeat Simple_repeat 2 24 0 751 189 43 188 chr15 19527301 19527354 -66168400 + L1MA8 LINE L1 5755 5814 -477 2125 139 0 0 chr15 19527354 19527663 -66168091 - AluSx SINE Alu -3 309 1 751 189 43 188 chr15 19527663 19528206 -66167548 + L1MA8 LINE L1 5814 6268 -23 767 298 103 39 chr15 19528225 19528948 -66166806 + L1M4 LINE L1 2113 2901 -3245 2107 163 9 11 chr15 19528948 19529297 -66166457 + MER7A DNA MER2_type 1 346 0 767 298 103 39 chr15 19529297 19529423 -66166331 + L1M4 LINE L1 2901 3017 -3129 * 819 225 58 0 chr15 19529415 19529606 -66166148 - L1MC4a LINE L1 -459 7349 7148 229 128 136 32 chr15 19529608 19529684 -66166070 + MER58 DNA MER1_type 131 2420 0 765 244 85 10 chr15 19529826 19530027 -66165727 - MER58A DNA MER1_type 0 224 9 192 77 0 0 chr15 19530968 19530994 -66164760 + (T)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr15 19531350 19531374 -66164380 + AT_rich Low_complexity Low_complexity 1 24 0 2279 112 0 3 chr15 19531694 19531999 -66163755 + AluSx SINE Alu 1 304 -8 1557 193 28 8 chr15 19532087 19532492 -66163262 + MER65C LTR ERV1 1 461 0 2379 87 0 0 chr15 19532538 19532836 -66162918 + AluSq SINE Alu 2 299 -14 2374 112 0 0 chr15 19533023 19533335 -66162419 - AluSx SINE Alu 0 312 1 1851 153 41 10 chr15 19533684 19534011 -66161743 - MLT1A1 LTR MaLR -29 403 1 2277 104 0 0 chr15 19534743 19535031 -66160723 + AluSx SINE Alu 1 288 -24 227 129 0 0 chr15 19535292 19535323 -66160431 - LTR16A1 LTR ERVL 0 457 427 1291 248 15 18 chr15 19535324 19535720 -66160034 + L1M4 LINE L1 2738 3132 -3014 283 214 101 0 chr15 19535729 19535818 -66159936 - L1MEc LINE L1 -3166 2963 2866 * 336 275 85 48 chr15 19535815 19536131 -66159623 - L1MEc LINE L1 -3684 2445 2118 2112 124 7 0 chr15 19536141 19536431 -66159323 - AluSx SINE Alu -20 292 1 364 283 45 70 chr15 19536489 19536733 -66159021 - L1MEc LINE L1 -4226 2084 1847 1611 134 4 41 chr15 19536784 19537052 -66158702 + AluJb SINE Alu 3 260 -52 274 321 25 0 chr15 19537063 19537144 -66158610 + C-rich Low_complexity Low_complexity 1 83 0 255 188 0 52 chr15 19537144 19537240 -66158514 + CT-rich Low_complexity Low_complexity 5 95 0 418 226 0 0 chr15 19537482 19537566 -66158188 + AluS SINE Alu 220 303 -7 2058 127 10 7 chr15 19537586 19537886 -66157868 - AluSx SINE Alu -11 301 1 485 278 74 96 chr15 19537957 19538147 -66157607 - L1MEc LINE L1 -4480 1649 1456 2105 131 6 16 chr15 19538147 19538461 -66157293 - AluSx SINE Alu -1 311 1 485 278 74 96 chr15 19538461 19538888 -66156866 - L1MEc LINE L1 -4673 1456 1021 2251 112 0 13 chr15 19538888 19539201 -66156553 - AluSg SINE Alu -1 309 1 485 278 74 96 chr15 19539201 19539692 -66156062 - L1MEc LINE L1 -5108 1021 563 192 152 0 0 chr15 19540597 19540630 -66155124 + (TTA)n Simple_repeat Simple_repeat 2 34 0 355 235 51 51 chr15 19542948 19543046 -66152708 - MER5A DNA MER1_type -46 143 46 685 354 28 0 chr15 19543565 19543746 -66152008 + MER91A DNA MER1_type 3 188 -8 218 263 0 40 chr15 19543760 19543836 -66151918 + CT-rich Low_complexity Low_complexity 1 73 0 279 0 0 0 chr15 19544114 19544145 -66151609 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1223 99 0 12 chr15 19544147 19544309 -66151445 - AluSg/x SINE Alu -29 283 124 816 206 11 22 chr15 19544364 19544544 -66151210 - AluJ SINE Alu -12 300 123 225 0 0 0 chr15 19544640 19544665 -66151089 + (TTG)n Simple_repeat Simple_repeat 2 26 0 266 111 0 0 chr15 19544665 19544701 -66151053 - AluJ SINE Alu -181 121 86 881 273 5 5 chr15 19544701 19544921 -66150833 - AluJo SINE Alu -92 220 1 1745 202 58 106 chr15 19545002 19545557 -66150197 - MLT1F LTR MaLR -12 530 3 2313 84 3 10 chr15 19546312 19546621 -66149133 + AluSg1 SINE Alu 1 307 -2 181 327 64 36 chr15 19546994 19547104 -66148650 + L3 LINE CR1 1386 1498 -79 275 375 62 0 chr15 19547139 19547251 -66148503 - L2 LINE L2 -16 3256 3138 40351 73 10 6 chr15 19547327 19553447 -66142307 - L1PA6 LINE L1 -2 6152 11 4810 98 30 43 chr15 19553893 19554072 -66141682 - L1MA5A LINE L1 -9 6930 6750 2273 122 3 0 chr15 19554072 19554383 -66141371 + AluSx SINE Alu 1 312 0 813 73 0 0 chr15 19554392 19554501 -66141253 + (TA)n Simple_repeat Simple_repeat 2 110 0 4810 98 30 43 chr15 19554501 19554836 -66140918 - L1MA5A LINE L1 -197 6742 6417 2059 120 3 3 chr15 19554836 19555150 -66140604 - AluSx SINE Alu 0 312 1 4810 98 30 43 chr15 19555150 19555382 -66140372 - L1MA5A LINE L1 -522 6417 6183 2494 80 49 20 chr15 19555382 19555732 -66140022 - THE1B LTR MaLR 0 364 5 4423 127 27 114 chr15 19555732 19556994 -66138760 - L1MA5A LINE L1 -743 6045 5045 6955 172 212 20 chr15 19557027 19557171 -66138583 - L1MA5A LINE L1 -4747 2042 1927 2421 100 3 0 chr15 19557171 19557482 -66138272 - AluSx SINE Alu 0 312 1 6955 172 212 20 chr15 19557482 19558907 -66136847 - L1MA5A LINE L1 -4862 1927 172 2347 95 7 0 chr15 19558907 19559212 -66136542 - AluSp SINE Alu -6 307 1 1742 136 36 52 chr15 19560177 19560486 -66135268 + AluJo SINE Alu 3 306 -6 846 168 8 0 chr15 19560702 19560833 -66134921 - FLAM_A SINE Alu 0 133 2 2346 95 3 0 chr15 19560976 19561282 -66134472 - AluSq SINE Alu -6 307 1 2023 129 0 29 chr15 19561361 19561672 -66134082 - AluSx SINE Alu -10 302 1 907 182 15 49 chr15 19562551 19562754 -66133000 - AluSp SINE Alu -10 303 108 288 234 0 0 chr15 19562952 19563029 -66132725 + A-rich Low_complexity Low_complexity 1 77 0 844 163 0 7 chr15 19563396 19563555 -66132199 + AluSg/x SINE Alu 152 309 0 1848 157 17 3 chr15 19563559 19563859 -66131895 + AluJb SINE Alu 1 304 -8 1153 311 80 9 chr15 19564026 19564489 -66131265 - LTR33 LTR ERVL -8 513 18 657 71 0 61 chr15 19566140 19566177 -66129577 - L1MB3 LINE L1 -8 6175 6137 1900 140 0 23 chr15 19566177 19566485 -66129269 - AluSx SINE Alu -11 301 1 657 71 0 61 chr15 19566485 19566545 -66129209 - L1MB3 LINE L1 -46 6137 6084 9870 126 105 99 chr15 19566545 19567833 -66127921 - L1M4c LINE L1 -4206 2178 686 1182 151 0 11 chr15 19567833 19568019 -66127735 - AluJo SINE Alu -9 303 120 9870 126 105 99 chr15 19568019 19568693 -66127061 - L1M4c LINE L1 -5698 686 18 187 336 100 18 chr15 19568738 19568848 -66126906 + MIR SINE MIR 118 236 -26 1171 159 48 5 chr15 19569227 19569416 -66126338 + AluJb SINE Alu 1 197 -115 2164 115 3 3 chr15 19569466 19569761 -66125993 - AluSx SINE Alu -13 299 5 1753 96 74 33 chr15 19570272 19570542 -66125212 + MER1B DNA MER1_type 59 339 0 1861 154 7 20 chr15 19570671 19570976 -66124778 + AluJb SINE Alu 1 301 -11 300 242 242 0 chr15 19571463 19571554 -66124200 - MIR SINE MIR -85 177 65 22 0 0 0 chr15 19571645 19571667 -66124087 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 19573932 19573961 -66121793 + AT_rich Low_complexity Low_complexity 1 29 0 2390 80 0 10 chr15 19577085 19577399 -66118355 + AluY SINE Alu 1 311 0 24 32 0 0 chr15 19577917 19577948 -66117806 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 19578901 19578933 -66116821 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 19579184 19579206 -66116548 + AT_rich Low_complexity Low_complexity 1 22 0 526 76 0 0 chr15 19579636 19579702 -66116052 + Alu SINE Alu 235 300 -12 1951 123 20 10 chr15 19579712 19580013 -66115741 + AluSq SINE Alu 1 304 -9 2038 111 35 3 chr15 19580066 19580354 -66115400 + AluSx SINE Alu 1 297 -15 842 158 8 15 chr15 19581770 19581903 -66113851 + FLAM_A SINE Alu 1 132 -1 2176 106 0 0 chr15 19581995 19582288 -66113466 + AluSx SINE Alu 1 293 -19 289 224 191 61 chr15 19582618 19582765 -66112989 - MIR SINE MIR -91 171 6 1890 148 30 10 chr15 19583232 19583535 -66112219 - AluJo SINE Alu -3 309 1 3357 193 40 9 chr15 19583594 19584247 -66111507 - L1MB5 LINE L1 0 6174 5502 514 271 136 66 chr15 19584269 19584500 -66111254 - L1M4c LINE L1 -6026 358 96 2162 108 0 33 chr15 19584500 19584806 -66110948 + AluSx SINE Alu 1 296 -16 514 271 136 66 chr15 19584806 19584906 -66110848 - L1M4c LINE L1 -6288 96 4 2205 104 0 0 chr15 19585935 19586239 -66109515 - AluSg1 SINE Alu 0 304 1 1721 171 14 10 chr15 19586257 19586549 -66109205 + AluSx SINE Alu 1 293 -19 2020 150 0 7 chr15 19586941 19587247 -66108507 + AluJb SINE Alu 1 304 -8 924 76 17 0 chr15 19588065 19588207 -66107547 + AluSg/x SINE Alu 162 305 0 23 33 0 0 chr15 19589174 19589204 -66106550 + AT_rich Low_complexity Low_complexity 1 30 0 1571 182 65 4 chr15 19589214 19589489 -66106265 + AluJo SINE Alu 1 292 -20 2048 124 0 10 chr15 19589603 19589902 -66105852 + AluSg SINE Alu 1 296 -14 347 286 0 0 chr15 19590375 19590459 -66105295 - L1MC/D LINE L1 -2143 5665 5582 1655 149 15 94 chr15 19590557 19590886 -66104868 - AluJo SINE Alu -9 303 1 663 244 22 39 chr15 19591980 19592160 -66103594 + MER5B DNA MER1_type 2 178 0 1998 121 16 50 chr15 19593586 19593761 -66101993 - AluSx SINE Alu -1 311 150 2419 97 0 0 chr15 19593761 19594061 -66101693 - AluSc SINE Alu -9 300 1 1998 121 16 50 chr15 19594061 19594207 -66101547 - AluSx SINE Alu -162 150 1 258 288 113 50 chr15 19594257 19594428 -66101326 + MIR SINE MIR 8 200 -62 1891 148 0 24 chr15 19594428 19594726 -66101028 - AluSx SINE Alu -21 291 1 258 288 113 50 chr15 19594726 19594794 -66100960 + MIR SINE MIR 200 262 0 284 242 30 0 chr15 19594826 19594892 -66100862 + MIR SINE MIR 65 132 -76 533 307 101 18 chr15 19595223 19595441 -66100313 + MIR SINE MIR 6 241 -21 336 48 0 0 chr15 19595450 19595492 -66100262 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 1777 164 25 0 chr15 19595495 19595770 -66099984 - AluJb SINE Alu -30 282 1 238 319 30 52 chr15 19596172 19596307 -66099447 + L2 LINE L2 2900 3031 -241 2007 65 0 4 chr15 19596359 19596604 -66099150 - AluY SINE Alu -13 298 55 672 231 8 0 chr15 19596918 19597039 -66098715 - FLAM_A SINE Alu -11 122 1 1901 126 0 25 chr15 19598244 19598529 -66097225 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr15 19598534 19598571 -66097183 + (TAA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr15 19598718 19598747 -66097007 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 19599818 19599844 -66095910 + AT_rich Low_complexity Low_complexity 1 26 0 2272 86 3 3 chr15 19600228 19600518 -66095236 - AluSq SINE Alu -20 293 4 210 229 21 0 chr15 19600629 19600677 -66095077 + (CCG)n Simple_repeat Simple_repeat 3 51 0 184 298 65 83 chr15 19601628 19601796 -66093958 - MIR3 SINE MIR -30 178 14 692 187 0 0 chr15 19602317 19602424 -66093330 + FLAM_C SINE Alu 2 108 -35 198 0 0 0 chr15 19602442 19602464 -66093290 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 19602484 19602505 -66093249 + AT_rich Low_complexity Low_complexity 1 21 0 1890 122 6 110 chr15 19602505 19602840 -66092914 + AluJo SINE Alu 2 301 -1 1741 136 48 18 chr15 19603101 19603373 -66092381 + AluJo SINE Alu 3 282 -30 2670 220 9 24 chr15 19603384 19603934 -66091820 + MLT1F LTR MaLR 1 542 0 245 215 18 0 chr15 19604369 19604445 -66091309 + L1MB8 LINE L1 6105 6182 -2 2360 80 0 7 chr15 19604599 19604899 -66090855 - AluY SINE Alu -13 298 1 268 250 161 24 chr15 19604905 19605073 -66090681 - L2 LINE L2 -12 3301 3111 2180 122 0 0 chr15 19605274 19605569 -66090185 - AluSx SINE Alu -17 295 1 2292 113 0 0 chr15 19605573 19605873 -66089881 - AluSg SINE Alu -10 300 1 2298 90 0 10 chr15 19606278 19606577 -66089177 - AluSq SINE Alu -17 296 1 2325 96 0 0 chr15 19606933 19607226 -66088528 - AluSx SINE Alu -19 293 1 1145 229 25 25 chr15 19607676 19607956 -66087798 - AluJo SINE Alu -31 281 2 2024 94 33 33 chr15 19608325 19608624 -66087130 - AluSq SINE Alu -14 299 1 2612 225 53 57 chr15 19608891 19609978 -66085776 + L1ME2 LINE L1 4971 6163 -1 1781 156 26 13 chr15 19609980 19610288 -66085466 + AluJo SINE Alu 1 312 0 280 278 45 15 chr15 19610431 19610564 -66085190 + L1MC4 LINE L1 7904 8040 -2 1595 194 0 33 chr15 19610572 19610876 -66084878 + AluJo SINE Alu 12 305 -7 761 187 75 43 chr15 19611173 19611360 -66084394 + MIR SINE MIR 70 262 0 3910 110 17 15 chr15 19611544 19612070 -66083684 - MER1A DNA MER1_type 0 527 1 1747 161 55 0 chr15 19612435 19612726 -66083028 - AluJo SINE Alu -5 307 1 2498 57 0 29 chr15 19613347 19613663 -66082091 - AluY SINE Alu -4 307 1 889 165 0 0 chr15 19614642 19614775 -66080979 - FLAM_C SINE Alu 0 133 1 360 356 50 32 chr15 19614806 19615087 -66080667 + L1 LINE L1 2726 3011 -3135 967 136 57 17 chr15 19615190 19615367 -66080387 - AluSg/x SINE Alu -17 293 110 2197 106 0 13 chr15 19615373 19615675 -66080079 + AluSx SINE Alu 1 298 -14 390 281 51 67 chr15 19615720 19615973 -66079781 + L1MDa LINE L1 100 348 -6192 317 325 77 34 chr15 19616232 19616441 -66079313 + L1MDa LINE L1 702 919 -5611 1488 239 90 69 chr15 19616513 19616989 -66078765 + L1MDa LINE L1 908 1373 -5167 1579 176 7 53 chr15 19616989 19617290 -66078464 + AluJo SINE Alu 1 287 -25 1488 239 90 69 chr15 19617290 19617640 -66078114 + L1MDa LINE L1 1373 1726 -4814 714 154 14 98 chr15 19617640 19617753 -66078001 + FLAM_A SINE Alu 1 101 -201 2101 125 0 3 chr15 19617753 19618048 -66077706 - AluSx SINE Alu -18 294 1 714 154 14 98 chr15 19618048 19618077 -66077677 + FLAM_A SINE Alu 101 131 -171 1488 239 90 69 chr15 19618077 19618142 -66077612 + L1MDa LINE L1 1726 1788 -4752 537 237 30 23 chr15 19618145 19618276 -66077478 - MIR SINE MIR -129 133 2 449 281 154 4 chr15 19618282 19618549 -66077205 + L1ME4a LINE L1 5792 6098 -23 1366 172 75 18 chr15 19618572 19618851 -66076903 + AluJo SINE Alu 5 299 -13 204 118 29 0 chr15 19619631 19619665 -66076089 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 19620438 19620459 -66075295 + AT_rich Low_complexity Low_complexity 1 21 0 1523 182 47 0 chr15 19620459 19620734 -66075020 + AluJo SINE Alu 1 288 -24 216 0 0 0 chr15 19620748 19620772 -66074982 + (CA)n Simple_repeat Simple_repeat 1 24 0 2202 99 3 10 chr15 19621087 19621389 -66074365 + AluSg SINE Alu 1 300 -10 508 308 7 7 chr15 19621496 19621639 -66074115 + MIR SINE MIR 1 143 -119 6969 183 55 30 chr15 19621642 19623135 -66072619 - MER52A LTR ERV1 0 1755 17 454 246 55 9 chr15 19623135 19623245 -66072509 + MIR SINE MIR 148 262 0 307 223 77 39 chr15 19623346 19623476 -66072278 + L1ME4a LINE L1 5718 5852 -269 451 212 129 24 chr15 19623521 19623691 -66072063 + L1ME4a LINE L1 5934 6121 0 652 256 86 48 chr15 19624274 19624610 -66071144 - L1MC4 LINE L1 -237 7805 7457 1014 151 44 0 chr15 19624689 19624848 -66070906 + AluJb SINE Alu 1 166 -146 1017 216 31 14 chr15 19624908 19625130 -66070624 - MIR SINE MIR 0 262 37 8761 40 8 225 chr15 19625150 19626920 -66068834 - SVA Other Other 0 1386 1 29 60 0 0 chr15 19626979 19627029 -66068725 + AT_rich Low_complexity Low_complexity 1 50 0 2199 110 0 0 chr15 19627703 19627993 -66067761 + AluSq SINE Alu 1 290 -23 1770 154 20 24 chr15 19628744 19629042 -66066712 + AluJb SINE Alu 1 297 -15 2037 130 3 10 chr15 19629812 19630113 -66065641 + AluSg SINE Alu 1 299 -11 2103 133 3 0 chr15 19630126 19630428 -66065326 + AluSx SINE Alu 1 303 -9 427 262 166 11 chr15 19630527 19630714 -66065040 - MIR SINE MIR -18 244 29 1747 158 28 3 chr15 19631427 19631712 -66064042 - AluJo SINE Alu -20 292 1 774 274 70 50 chr15 19631741 19632020 -66063734 - L2 LINE L2 -91 3222 2933 2357 86 0 13 chr15 19632020 19632321 -66063433 + AluSc SINE Alu 1 297 -12 774 274 70 50 chr15 19632321 19632399 -66063355 - L2 LINE L2 -380 2933 2858 1108 267 20 32 chr15 19632414 19632758 -66062996 - L2 LINE L2 -572 2742 2403 22 0 0 0 chr15 19633141 19633163 -66062591 + AT_rich Low_complexity Low_complexity 1 22 0 1263 202 46 63 chr15 19633307 19633502 -66062252 - MLT1D LTR MaLR -145 360 172 2402 86 10 0 chr15 19633502 19633804 -66061950 + AluSg SINE Alu 1 305 -5 1263 202 46 63 chr15 19633804 19633955 -66061799 - MLT1D LTR MaLR -333 172 20 2213 129 21 37 chr15 19634231 19634612 -66061142 + THE1C LTR MaLR 1 375 0 1789 165 7 0 chr15 19634805 19635096 -66060658 + AluJb SINE Alu 5 297 -15 1437 132 68 34 chr15 19635713 19635948 -66059806 + AluJo SINE Alu 49 291 -21 213 65 0 0 chr15 19635948 19635979 -66059775 + (TA)n Simple_repeat Simple_repeat 2 32 0 296 236 112 22 chr15 19636093 19636182 -66059572 - MER34 LTR ERV1 -29 513 417 1585 153 4 0 chr15 19636357 19636598 -66059156 + AluJo SINE Alu 49 290 -22 2243 101 3 10 chr15 19636610 19636918 -66058836 + AluSx SINE Alu 1 306 -6 2007 159 156 17 chr15 19636932 19637354 -66058400 - L1MC3 LINE L1 -163 7622 7142 1651 150 4 8 chr15 19637369 19637636 -66058118 + AluJb SINE Alu 34 299 -13 672 203 160 0 chr15 19637636 19637823 -66057931 + L1ME2 LINE L1 5697 5913 -251 1343 285 98 60 chr15 19637863 19638118 -66057636 + ERVL LTR ERVL 3678 3922 -1386 2358 101 0 0 chr15 19638118 19638424 -66057330 - AluSx SINE Alu -6 306 1 1343 285 98 60 chr15 19638424 19638476 -66057278 + ERVL LTR ERVL 3922 3971 -1337 1979 141 14 10 chr15 19638476 19638773 -66056981 - AluJo SINE Alu -14 298 1 1343 285 98 60 chr15 19638773 19639128 -66056626 + ERVL LTR ERVL 3971 4678 -630 3436 165 24 24 chr15 19639134 19639764 -66055990 - L1MB7 LINE L1 -112 6072 5443 2154 126 12 27 chr15 19639766 19639914 -66055840 - MER6 DNA MER2_type -3 862 713 2323 81 10 0 chr15 19639914 19640209 -66055545 - AluSp SINE Alu -15 298 1 2154 126 12 27 chr15 19640209 19640394 -66055360 - MER6 DNA MER2_type -152 713 274 2605 49 0 0 chr15 19640450 19640755 -66054999 - AluY SINE Alu -6 305 1 2616 43 0 0 chr15 19640930 19641232 -66054522 - AluY SINE Alu -9 302 1 28 0 0 0 chr15 19641273 19641301 -66054453 + AT_rich Low_complexity Low_complexity 1 28 0 328 266 138 15 chr15 19642603 19642806 -66052948 - HAL1b LINE L1 -627 721 494 884 165 37 0 chr15 19643004 19643168 -66052586 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 19643268 19643320 -66052434 + Alu SINE Alu 257 308 0 2451 100 0 0 chr15 19643363 19643672 -66052082 - AluSc SINE Alu 0 309 1 372 290 37 9 chr15 19643947 19644054 -66051700 + MER5B DNA MER1_type 66 175 -3 251 234 0 0 chr15 19644059 19644106 -66051648 + MER3 DNA MER1_type 42 88 -121 * 762 182 81 50 chr15 19644070 19644226 -66051528 - MER3 DNA MER1_type -5 204 39 2303 92 0 0 chr15 19644226 19644521 -66051233 - AluY SINE Alu -16 295 1 762 182 81 50 chr15 19644521 19644562 -66051192 - MER3 DNA MER1_type -170 39 1 381 171 83 72 chr15 19644626 19644819 -66050935 + Charlie7 DNA MER1_type 2414 2608 -4 21 71 0 0 chr15 19644941 19644983 -66050771 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr15 19646945 19646971 -66048783 + AT_rich Low_complexity Low_complexity 1 26 0 1638 154 20 50 chr15 19646971 19647270 -66048484 - AluJo SINE Alu -21 291 2 1178 272 81 45 chr15 19647292 19647407 -66048347 + L1MC4 LINE L1 5292 5401 -2407 1905 145 13 35 chr15 19647407 19647725 -66048029 + AluSq SINE Alu 1 311 -2 1178 272 81 45 chr15 19647725 19648164 -66047590 + L1MC4 LINE L1 5401 5866 -1942 22 0 0 0 chr15 19648633 19648655 -66047099 + AT_rich Low_complexity Low_complexity 1 22 0 216 306 0 0 chr15 19649758 19649807 -66045947 - L2 LINE L2 -15 3257 3209 591 246 185 73 chr15 19649808 19650047 -66045707 + L1MC4 LINE L1 7316 7527 -515 2129 137 0 3 chr15 19650047 19650360 -66045394 + AluSx SINE Alu 1 312 0 591 246 185 73 chr15 19650360 19650530 -66045224 + L1MC4 LINE L1 7527 7771 -271 28 0 0 0 chr15 19651543 19651571 -66044183 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 0 0 chr15 19651686 19651730 -66044024 - L2 LINE L2 0 3272 3229 2280 102 7 0 chr15 19652563 19652866 -66042888 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr15 19652873 19652896 -66042858 + AT_rich Low_complexity Low_complexity 1 23 0 2217 128 0 3 chr15 19652900 19653212 -66042542 + AluSx SINE Alu 1 311 -1 204 40 0 0 chr15 19653213 19653238 -66042516 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 303 160 6 chr15 19653606 19653781 -66041973 + LTR16B LTR ERVL 263 464 0 21 82 0 0 chr15 19654174 19654223 -66041531 + AT_rich Low_complexity Low_complexity 1 49 0 245 188 29 0 chr15 19654389 19654458 -66041296 + (CATA)n Simple_repeat Simple_repeat 3 73 0 474 265 122 0 chr15 19655075 19655222 -66040532 - MIR3 SINE MIR -14 194 30 2240 74 0 44 chr15 19655839 19656162 -66039592 + AluSg SINE Alu 1 310 0 22 0 0 0 chr15 19656442 19656464 -66039290 + AT_rich Low_complexity Low_complexity 1 22 0 1010 123 0 0 chr15 19657329 19657459 -66038295 + AluSg SINE Alu 1 130 -180 2174 98 0 33 chr15 19657462 19657768 -66037986 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr15 19657768 19657792 -66037962 + AT_rich Low_complexity Low_complexity 1 24 0 1815 156 6 19 chr15 19657920 19658056 -66037698 + AluSx SINE Alu 1 137 -175 2070 104 11 4 chr15 19658056 19658392 -66037362 + AluSg SINE Alu 1 338 0 1815 156 6 19 chr15 19658392 19658568 -66037186 + AluSx SINE Alu 137 310 -2 263 211 9 140 chr15 19658659 19658713 -66037041 + L1ME LINE L1 5563 5596 -525 2157 102 40 7 chr15 19658713 19659016 -66036738 + AluSp SINE Alu 1 313 0 263 211 9 140 chr15 19659016 19659075 -66036679 + L1ME LINE L1 5596 5661 -460 3258 24 5 0 chr15 19659507 19659926 -66035828 - L1P LINE L1 -772 5374 4954 2260 11 0 11 chr15 19659926 19660187 -66035567 + L1PA2 LINE L1 5889 6148 -7 446 114 14 0 chr15 19661026 19661096 -66034658 - L1PA10 LINE L1 0 6168 6098 2138 143 0 6 chr15 19661164 19661478 -66034276 + AluSx SINE Alu 1 312 0 277 190 17 17 chr15 19662057 19662115 -66033639 + MIR3 SINE MIR 119 176 -32 2155 91 53 0 chr15 19662425 19662710 -66033044 + AluSx SINE Alu 1 300 -12 57 103 0 0 chr15 19663009 19663213 -66032541 + AT_rich Low_complexity Low_complexity 1 204 0 355 137 8 145 chr15 19663265 19663389 -66032365 + L1MB3 LINE L1 4972 5078 -1068 * 5534 43 0 0 chr15 19663388 19664100 -66031654 - L1PA5 LINE L1 -1605 4541 3830 6983 47 13 10 chr15 19664102 19665703 -66030051 + L1PA5 LINE L1 4546 6154 0 4110 142 35 13 chr15 19665714 19666644 -66029110 + L1MB3 LINE L1 5071 6019 -164 22 35 0 0 chr15 19666645 19666674 -66029080 + AT_rich Low_complexity Low_complexity 1 29 0 1741 157 23 30 chr15 19667462 19667762 -66027992 - AluJb SINE Alu -13 299 2 22 35 0 0 chr15 19668416 19668445 -66027309 + AT_rich Low_complexity Low_complexity 1 29 0 2307 97 0 13 chr15 19668627 19668936 -66026818 + AluSg SINE Alu 1 305 -5 1774 169 0 27 chr15 19669193 19669488 -66026266 + AluJb SINE Alu 1 287 -25 240 59 0 0 chr15 19669488 19669522 -66026232 + (CA)n Simple_repeat Simple_repeat 2 35 0 344 343 74 29 chr15 19669899 19670141 -66025613 - L2 LINE L2 -1291 2023 1771 197 193 193 0 chr15 19671395 19671452 -66024302 + MIR SINE MIR 1 68 -194 266 148 19 74 chr15 19671484 19671538 -66024216 + MIR SINE MIR 55 105 -157 422 312 8 0 chr15 19671801 19671926 -66023828 + MIR SINE MIR 127 252 -10 2064 88 81 4 chr15 19671945 19672218 -66023536 + AluSc SINE Alu 1 294 -15 234 265 193 12 chr15 19673180 19673263 -66022491 - L2 LINE L2 -52 3220 3123 2205 51 0 0 chr15 19673310 19673563 -66022191 + AluY SINE Alu 13 265 -46 429 235 8 0 chr15 19673857 19673965 -66021789 + MER5A DNA MER1_type 1 109 -80 1611 175 12 0 chr15 19673977 19674229 -66021525 - AluJo SINE Alu -21 291 37 5753 106 14 23 chr15 19674289 19674444 -66021310 + L1PA13 LINE L1 5162 5317 -846 2095 112 0 45 chr15 19674444 19674758 -66020996 + AluSx SINE Alu 1 300 -12 5753 106 14 23 chr15 19674758 19675607 -66020147 + L1PA13 LINE L1 5317 6161 -2 806 307 82 39 chr15 19676077 19676491 -66019263 + L3 LINE CR1 996 1427 -150 332 330 194 10 chr15 19676868 19677074 -66018680 + MIR SINE MIR 6 249 -13 1293 186 0 14 chr15 19677610 19677831 -66017923 - AluJo SINE Alu -13 299 82 900 107 0 0 chr15 19677844 19677966 -66017788 - AluSc SINE Alu -12 297 176 428 179 0 0 chr15 19677986 19678053 -66017701 + MER2 DNA MER2_type 279 345 0 1856 146 7 10 chr15 19678084 19678386 -66017368 + AluJo SINE Alu 1 301 -11 2091 117 7 0 chr15 19679187 19679470 -66016284 + AluSx SINE Alu 9 293 -19 2169 117 0 3 chr15 19679649 19679957 -66015797 + AluSx SINE Alu 1 307 -5 212 0 36 0 chr15 19680716 19680744 -66015010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2237 107 0 3 chr15 19681928 19682226 -66013528 - AluSx SINE Alu -15 297 1 200 194 0 0 chr15 19682826 19682862 -66012892 + (CATA)n Simple_repeat Simple_repeat 2 37 0 759 164 8 22 chr15 19683247 19683381 -66012373 - FLAM_C SINE Alu -1 132 1 537 243 99 50 chr15 19684691 19684872 -66010882 - MIR SINE MIR -70 192 3 564 251 5 36 chr15 19685180 19685375 -66010379 + L1PBa LINE L1 6 194 -6669 905 113 38 13 chr15 19685375 19685534 -66010220 + L1PB1 LINE L1 5627 5789 -362 315 191 0 0 chr15 19685537 19685600 -66010154 + (CA)n Simple_repeat Simple_repeat 2 64 0 2332 119 0 22 chr15 19685605 19685976 -66009778 + L1PB1 LINE L1 5781 6143 -8 1593 174 26 3 chr15 19685984 19686295 -66009459 + L1MB2 LINE L1 5465 5782 -401 195 129 0 0 chr15 19686330 19686361 -66009393 + (TA)n Simple_repeat Simple_repeat 2 32 0 1336 151 57 8 chr15 19686361 19686626 -66009128 + L1MB2 LINE L1 5892 6169 -2 620 157 167 0 chr15 19686646 19686754 -66009000 - FRAM SINE Alu -30 146 21 795 167 0 0 chr15 19687539 19687665 -66008089 + FLAM_C SINE Alu 2 127 -6 2166 98 3 35 chr15 19687735 19688051 -66007703 - AluSp SINE Alu -6 307 2 377 329 148 30 chr15 19688171 19688536 -66007218 + L3 LINE CR1 1087 1494 -83 2254 103 24 0 chr15 19688594 19688886 -66006868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr15 19689029 19689051 -66006703 + AT_rich Low_complexity Low_complexity 1 22 0 342 306 16 0 chr15 19689252 19689376 -66006378 + T-rich Low_complexity Low_complexity 1 126 0 2239 103 60 0 chr15 19689377 19689725 -66006029 - L1PA11 LINE L1 -2 6172 5804 5544 141 24 4 chr15 19689725 19690745 -66005009 - L1M LINE L1 -743 5403 4379 899 153 0 0 chr15 19690803 19690940 -66004814 - FLAM_C SINE Alu -6 137 1 356 257 44 81 chr15 19691087 19691223 -66004531 + MIR SINE MIR 132 262 0 22 80 0 0 chr15 19691700 19691750 -66004004 + AT_rich Low_complexity Low_complexity 1 50 0 223 186 0 0 chr15 19692088 19692131 -66003623 + A-rich Low_complexity Low_complexity 1 43 0 1868 176 10 3 chr15 19692201 19692503 -66003251 - AluJb SINE Alu -8 304 1 632 211 55 62 chr15 19692549 19692629 -66003125 - MER113 DNA MER1_type? -98 423 344 1853 114 0 8 chr15 19692629 19692894 -66002860 - AluSx SINE Alu 0 312 44 632 211 55 62 chr15 19692894 19693069 -66002685 - MER113 DNA MER1_type? -177 344 170 195 243 111 97 chr15 19693121 19693265 -66002489 + MIR SINE MIR 61 206 -56 2284 75 10 0 chr15 19693298 19693591 -66002163 - AluY SINE Alu -15 296 1 219 296 93 43 chr15 19693636 19693798 -66001956 - MIR SINE MIR -70 192 23 234 0 0 0 chr15 19694265 19694291 -66001463 + (A)n Simple_repeat Simple_repeat 1 26 0 1184 159 48 71 chr15 19695365 19695660 -66000094 + L1MB2 LINE L1 5884 6171 0 255 370 0 0 chr15 19695663 19695736 -66000018 - MIR SINE MIR -102 106 34 597 169 17 16 chr15 19695788 19695940 -65999814 + L1M4 LINE L1 5371 5517 -667 241 143 20 20 chr15 19695955 19696004 -65999750 + L1M4 LINE L1 4285 4333 -1813 905 165 183 0 chr15 19696004 19696168 -65999586 - AluJb SINE Alu -118 194 1 262 120 0 0 chr15 19696211 19696261 -65999493 + L1M4 LINE L1 3829 3878 -2268 228 108 0 0 chr15 19696270 19696307 -65999447 - L1M4 LINE L1 -1890 4256 4220 631 114 0 0 chr15 19696309 19696397 -65999357 - AluJ/FLAM SINE Alu -214 98 11 290 106 0 0 chr15 19696423 19696470 -65999284 - Tigger2 DNA MER2_type -2480 238 192 1638 211 36 3 chr15 19696470 19696854 -65998900 - L1M4 LINE L1 -1921 4225 3829 2016 141 40 0 chr15 19696897 19697195 -65998559 + AluSx SINE Alu 1 310 -2 523 268 73 29 chr15 19697225 19697607 -65998147 - L1MC4 LINE L1 -650 7392 7000 438 252 196 56 chr15 19697667 19697953 -65997801 - L1MC4 LINE L1 -976 7066 6741 2024 113 39 3 chr15 19698454 19698737 -65997017 - AluSx SINE Alu -19 293 1 1300 25 0 13 chr15 19699454 19699613 -65996141 - L1PA2 LINE L1 -1 6154 5998 2452 77 3 0 chr15 19699634 19699931 -65995823 - AluSp SINE Alu -15 298 1 279 0 0 0 chr15 19699973 19700004 -65995750 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 6390 69 46 24 chr15 19700012 19701676 -65994078 + SVA Other Other 50 1380 -6 233 29 29 0 chr15 19701682 19701716 -65994038 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 974 206 0 6 chr15 19702702 19702867 -65992887 + AluJo SINE Alu 1 164 -148 767 152 8 24 chr15 19703203 19703328 -65992426 + FLAM_C SINE Alu 3 125 -18 21 57 0 0 chr15 19703334 19703369 -65992385 + AT_rich Low_complexity Low_complexity 1 35 0 483 259 147 45 chr15 19703376 19703514 -65992240 + HAL1b LINE L1 214 337 -1011 2301 63 0 11 chr15 19703514 19703827 -65991927 + AluY SINE Alu 1 310 0 483 259 147 45 chr15 19703827 19704042 -65991712 + HAL1b LINE L1 337 604 -744 1338 235 59 6 chr15 19704056 19704379 -65991375 - MER58B DNA MER1_type 0 341 2 3768 146 27 33 chr15 19704389 19704689 -65991065 - L1MC2 LINE L1 -350 5994 5694 2127 118 14 0 chr15 19704689 19704977 -65990777 + AluSx SINE Alu 1 292 -20 3768 146 27 33 chr15 19704977 19705153 -65990601 - L1MC2 LINE L1 -650 5694 5518 2226 116 7 0 chr15 19705153 19705463 -65990291 + AluSp SINE Alu 1 312 -1 3768 146 27 33 chr15 19705463 19705800 -65989954 - L1MC2 LINE L1 -826 5518 5186 452 253 21 27 chr15 19705795 19705981 -65989773 + L1ME LINE L1 5598 5782 -339 * 25 83 0 0 chr15 19706022 19706082 -65989672 + AT_rich Low_complexity Low_complexity 1 60 0 250 340 40 10 chr15 19706539 19706639 -65989115 + L3 LINE CR1 1465 1567 -10 225 361 8 0 chr15 19706788 19706907 -65988847 - MARNA DNA Mariner -345 241 122 493 256 58 16 chr15 19707152 19707273 -65988481 + L2 LINE L2 3187 3312 -1 2044 108 7 36 chr15 19707393 19707698 -65988056 - AluSx SINE Alu -16 296 1 2157 101 0 7 chr15 19707777 19708064 -65987690 + AluSp SINE Alu 1 285 -28 186 0 40 0 chr15 19708064 19708089 -65987665 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 884 159 43 37 chr15 19708170 19708333 -65987421 - MER20 DNA MER1_type -1 218 55 2207 95 7 0 chr15 19708474 19708768 -65986986 - AluSg1 SINE Alu -13 296 1 785 225 45 27 chr15 19709106 19709328 -65986426 + MER46C DNA MER2_type 1 226 -112 21 71 0 0 chr15 19709515 19709557 -65986197 + AT_rich Low_complexity Low_complexity 1 42 0 2037 104 0 112 chr15 19709617 19709955 -65985799 + AluSx SINE Alu 1 300 -2 657 209 31 19 chr15 19710633 19710883 -65984871 + L1MC4a LINE L1 5078 5504 -662 818 156 78 13 chr15 19710898 19711052 -65984702 + FAM SINE Alu 1 46 -3 2476 66 0 0 chr15 19711140 19711441 -65984313 + AluY SINE Alu 1 301 -10 626 239 233 21 chr15 19711636 19711967 -65983787 + L1MC4a LINE L1 5548 5948 -1860 236 285 85 0 chr15 19712283 19712385 -65983369 + L1MC/D LINE L1 5682 5790 -416 22 80 0 0 chr15 19712442 19712492 -65983262 + AT_rich Low_complexity Low_complexity 1 50 0 948 155 0 0 chr15 19712506 19712648 -65983106 - AluSp/q SINE Alu -7 306 165 2299 95 0 0 chr15 19712906 19713191 -65982563 + AluSx SINE Alu 11 295 -17 2232 87 0 11 chr15 19713227 19713513 -65982241 + AluY SINE Alu 1 283 -28 198 0 0 0 chr15 19713517 19713539 -65982215 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 580 138 100 92 chr15 19713624 19713754 -65982000 - FLAM_A SINE Alu -2 131 1 1616 203 70 10 chr15 19713758 19714157 -65981597 + L1MC4a LINE L1 7372 7794 -14 38 51 0 0 chr15 19714425 19714484 -65981270 + AT_rich Low_complexity Low_complexity 1 59 0 475 266 7 52 chr15 19714767 19714921 -65980833 - MIR3 SINE MIR -52 156 10 2344 97 6 0 chr15 19714943 19715254 -65980500 - AluSp SINE Alu 0 313 1 752 126 200 0 chr15 19715339 19715474 -65980280 + MER46A DNA MER2_type 73 234 -2 2020 93 114 0 chr15 19715673 19715953 -65979801 + AluSx SINE Alu 1 312 0 936 185 12 0 chr15 19715953 19716115 -65979639 + AluSg/x SINE Alu 132 295 -15 319 246 114 48 chr15 19716337 19716504 -65979250 + L2 LINE L2 3129 3306 -7 2410 79 0 0 chr15 19716577 19716868 -65978886 - AluSc SINE Alu -18 291 1 1751 154 9 38 chr15 19717517 19717835 -65977919 + AluJb SINE Alu 3 311 -1 271 273 130 39 chr15 19717841 19717995 -65977759 - L3 LINE CR1 -205 1372 1205 2061 96 18 11 chr15 19718171 19718481 -65977273 + AluSx SINE Alu 6 312 0 224 140 0 53 chr15 19718495 19718552 -65977202 + (T)n Simple_repeat Simple_repeat 1 54 0 566 229 294 14 chr15 19718594 19718887 -65976867 - L3 LINE CR1 -603 974 600 15973 125 32 6 chr15 19719872 19720183 -65975571 - Tigger1 DNA MER2_type 0 2418 2117 2165 102 41 0 chr15 19720183 19720478 -65975276 - AluSx SINE Alu -5 307 1 15973 125 32 6 chr15 19720478 19722522 -65973232 - Tigger1 DNA MER2_type -301 2117 1 2131 104 45 0 chr15 19723073 19723360 -65972394 + AluSx SINE Alu 3 302 -10 651 210 35 21 chr15 19723465 19723608 -65972146 + L1ME1 LINE L1 6016 6160 -6 210 37 0 0 chr15 19723672 19723699 -65972055 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 283 310 70 0 chr15 19723711 19723811 -65971943 - L2 LINE L2 -44 3228 3122 2399 82 0 0 chr15 19723897 19724191 -65971563 - AluY SINE Alu -17 294 1 363 269 42 71 chr15 19724507 19724571 -65971183 - L2 LINE L2 0 3313 3249 2389 70 3 0 chr15 19724571 19724858 -65970896 + AluSc SINE Alu 1 288 -21 363 269 42 71 chr15 19724858 19725005 -65970749 - L2 LINE L2 -64 3249 3108 944 261 133 25 chr15 19725067 19725435 -65970319 - L2 LINE L2 -338 2976 2569 409 298 25 97 chr15 19725488 19725564 -65970190 + L2 LINE L2 2351 2431 -883 1645 149 0 8 chr15 19725564 19725701 -65970053 + AluSx SINE Alu 1 137 -175 2237 104 3 10 chr15 19725701 19726010 -65969744 + AluSx SINE Alu 1 307 -5 1645 149 0 8 chr15 19726010 19726120 -65969634 + AluSx SINE Alu 137 246 -66 409 298 25 97 chr15 19726120 19726362 -65969392 + L2 LINE L2 2431 2646 -668 * 682 234 54 22 chr15 19726358 19726542 -65969212 - L2 LINE L2 -977 2337 2148 1949 160 3 0 chr15 19726904 19727192 -65968562 + AluSx SINE Alu 1 289 -23 1138 182 11 5 chr15 19727204 19727391 -65968363 + AluJb SINE Alu 105 292 -20 411 195 45 46 chr15 19727454 19727566 -65968188 + MER5A DNA MER1_type 2 102 -76 1855 94 3 94 chr15 19728757 19729066 -65966688 + AluSq SINE Alu 23 303 -10 295 266 154 30 chr15 19730578 19730747 -65965007 + L1MC4a LINE L1 5716 5905 -1903 26 64 0 0 chr15 19730873 19730920 -65964834 + AT_rich Low_complexity Low_complexity 1 47 0 267 246 80 125 chr15 19731066 19731330 -65964424 + MER112 DNA MER1_type 8 259 -1 2348 103 3 3 chr15 19731456 19731767 -65963987 + AluSq SINE Alu 1 311 -2 356 264 31 78 chr15 19731853 19731982 -65963772 - MIR SINE MIR -84 178 56 780 120 51 17 chr15 19731987 19732104 -65963650 + FLAM_C SINE Alu 7 127 -16 2289 98 3 0 chr15 19732244 19732540 -65963214 - AluSp SINE Alu -16 297 1 3883 129 21 20 chr15 19732562 19733172 -65962582 + L1MB3 LINE L1 5572 6182 -1 2338 97 0 0 chr15 19733180 19733479 -65962275 + AluSx SINE Alu 1 299 -13 352 333 53 47 chr15 19733494 19733549 -65962205 + L1ME LINE L1 4931 4984 -1162 2453 73 0 3 chr15 19733549 19733850 -65961904 - AluSg SINE Alu -10 300 1 352 333 53 47 chr15 19733850 19733919 -65961835 + L1ME LINE L1 4984 5051 -1095 1903 148 3 3 chr15 19733919 19734209 -65961545 - AluJb SINE Alu -22 290 1 352 333 53 47 chr15 19734209 19734404 -65961350 + L1ME LINE L1 5051 5253 -893 2000 152 0 0 chr15 19734418 19734720 -65961034 + AluJb SINE Alu 1 302 -10 583 281 106 64 chr15 19734724 19735029 -65960725 + L1ME LINE L1 5298 5634 -487 2409 82 0 3 chr15 19735029 19735333 -65960421 + AluSg1 SINE Alu 1 303 -6 583 281 106 64 chr15 19735333 19735529 -65960225 + L1ME LINE L1 5634 5820 -301 245 279 59 15 chr15 19735529 19735597 -65960157 + Charlie1 DNA MER1_type 20 90 -2671 964 173 28 0 chr15 19735598 19735777 -65959977 + AluJb SINE Alu 118 301 -11 3057 156 85 60 chr15 19735838 19736557 -65959197 + Charlie1 DNA MER1_type 1421 2157 -604 970 51 80 43 chr15 19736557 19736695 -65959059 + AluSg1 SINE Alu 1 143 -166 1721 177 105 47 chr15 19736723 19736848 -65958906 + Charlie1 DNA MER1_type 2156 2272 -489 2251 62 25 68 chr15 19736848 19737000 -65958754 + AluSg SINE Alu 1 133 -177 2392 63 3 0 chr15 19737000 19737287 -65958467 + AluY SINE Alu 7 294 -17 2251 62 25 68 chr15 19737287 19737458 -65958296 + AluSg SINE Alu 133 310 0 1721 177 105 47 chr15 19737458 19737476 -65958278 + Charlie1 DNA MER1_type 2272 2288 -473 2104 67 7 77 chr15 19737476 19737809 -65957945 + AluSq SINE Alu 6 317 0 1721 177 105 47 chr15 19737809 19737929 -65957825 + Charlie1 DNA MER1_type 2288 2400 -361 2655 45 0 0 chr15 19737929 19738240 -65957514 + AluY SINE Alu 1 311 0 1721 177 105 47 chr15 19738240 19738441 -65957313 + Charlie1 DNA MER1_type 2400 2650 -111 1116 98 0 52 chr15 19738441 19738614 -65957140 - AluSg/x SINE Alu -4 308 145 359 204 68 58 chr15 19738862 19738965 -65956789 + MER5B DNA MER1_type 5 108 -70 2282 91 0 0 chr15 19738968 19739266 -65956488 + AluY SINE Alu 14 311 0 1925 164 7 0 chr15 19739285 19739595 -65956159 + AluSx SINE Alu 1 312 0 243 61 0 0 chr15 19739640 19739673 -65956081 + (T)n Simple_repeat Simple_repeat 1 33 0 206 259 0 19 chr15 19740547 19740601 -65955153 + MER5B DNA MER1_type 126 178 0 1063 176 101 17 chr15 19740696 19740934 -65954820 - AluJo SINE Alu -19 293 36 1593 246 80 26 chr15 19741193 19741619 -65954135 - LTR16A LTR ERVL -1 449 1 775 59 0 126 chr15 19741681 19741800 -65953954 + AluSc SINE Alu 2 105 -204 2185 96 0 11 chr15 19741814 19742094 -65953660 + AluSc SINE Alu 2 278 -31 197 33 33 0 chr15 19742097 19742127 -65953627 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 280 336 129 0 chr15 19742176 19742316 -65953438 + MIR SINE MIR 49 206 -56 424 270 72 20 chr15 19742943 19743095 -65952659 - MIR SINE MIR -63 199 40 863 186 32 6 chr15 19743911 19744067 -65951687 + MER8 DNA MER2_type 1 160 -79 21 36 0 0 chr15 19744067 19744095 -65951659 + AT_rich Low_complexity Low_complexity 1 28 0 1086 163 0 0 chr15 19744095 19744255 -65951499 - AluSg/x SINE Alu -27 283 124 2357 93 3 0 chr15 19744255 19744565 -65951189 - AluSx SINE Alu -1 311 1 641 111 22 0 chr15 19744566 19744656 -65951098 + MER8 DNA MER2_type 147 238 -1 2181 155 22 11 chr15 19744698 19745059 -65950695 - MLT1A1 LTR MaLR 0 365 1 1611 152 14 22 chr15 19745093 19745369 -65950385 + AluJb SINE Alu 11 284 -28 1164 61 7 0 chr15 19745398 19745546 -65950208 - L1PA6 LINE L1 -4 6150 6002 1020 184 206 0 chr15 19745898 19746176 -65949578 + MER58B DNA MER1_type 1 340 -1 322 253 21 11 chr15 19746232 19746327 -65949427 + HAL1 LINE L1 2107 2202 -305 459 0 0 0 chr15 19747558 19747609 -65948145 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr15 19747661 19747696 -65948058 + AT_rich Low_complexity Low_complexity 1 35 0 1168 83 0 0 chr15 19747907 19748051 -65947703 - AluSp/q SINE Alu -14 299 156 363 288 58 37 chr15 19748205 19748396 -65947358 - L1ME LINE L1 -328 5793 5599 603 204 0 0 chr15 19748405 19748513 -65947241 + AluY SINE Alu 2 109 -202 337 303 112 62 chr15 19748518 19749112 -65946642 - HAL1 LINE L1 -1205 1302 876 32 26 0 0 chr15 19749307 19749346 -65946408 + AT_rich Low_complexity Low_complexity 1 39 0 1443 189 79 0 chr15 19749386 19749651 -65946103 - AluJb SINE Alu -26 286 1 1986 150 0 10 chr15 19749661 19749961 -65945793 - AluSx SINE Alu -15 297 1 530 123 0 14 chr15 19749961 19750034 -65945720 + MER2 DNA MER2_type 274 345 0 1624 139 29 0 chr15 19750034 19750307 -65945447 - L1MB3 LINE L1 -82 6101 5821 1263 135 10 13 chr15 19750422 19750440 -65945314 + L1MB4 LINE L1 5649 5666 -494 3607 122 4 9 chr15 19750440 19750964 -65944790 + L1PA15 LINE L1 5642 6162 -3 1263 135 10 13 chr15 19750964 19751171 -65944583 + L1MB4 LINE L1 5666 5876 -284 295 136 0 0 chr15 19751174 19751218 -65944536 + L1MB4 LINE L1 6074 6117 -63 1673 170 0 14 chr15 19751220 19751503 -65944251 - AluJb SINE Alu -33 279 1 24 0 0 0 chr15 19751516 19751540 -65944214 + AT_rich Low_complexity Low_complexity 1 24 0 1845 113 0 19 chr15 19751542 19751835 -65943919 + AluSx SINE Alu 26 313 0 1904 134 11 14 chr15 19751965 19752242 -65943512 + AluSq SINE Alu 1 276 -37 4566 70 19 6 chr15 19752759 19753774 -65941980 + MER11A LTR ERVK 1 1261 -5 181 384 71 0 chr15 19754343 19754455 -65941299 + L2 LINE L2 2832 2951 -363 2014 116 0 11 chr15 19754622 19754907 -65940847 - AluSc SINE Alu -27 282 1 21 71 0 0 chr15 19755117 19755159 -65940595 + AT_rich Low_complexity Low_complexity 1 42 0 2565 68 0 0 chr15 19755256 19755563 -65940191 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 19755567 19755590 -65940164 + (TA)n Simple_repeat Simple_repeat 1 23 0 2507 74 0 3 chr15 19756321 19756630 -65939124 + AluY SINE Alu 1 308 -3 1439 93 121 31 chr15 19757575 19757832 -65937922 + AluJo SINE Alu 2 281 -31 287 228 81 73 chr15 19757958 19758081 -65937673 - MIR SINE MIR -50 212 89 26 0 0 0 chr15 19758412 19758438 -65937316 + GC_rich Low_complexity Low_complexity 1 26 0 186 257 201 42 chr15 19759129 19759273 -65936481 - MIR3 SINE MIR -24 184 18 1277 55 6 0 chr15 19760514 19760677 -65935077 - L1PA7 LINE L1 0 6154 5991 1133 189 32 25 chr15 19760751 19761036 -65934718 + L1ME1 LINE L1 5862 6148 -18 22 70 0 0 chr15 19761049 19761092 -65934662 + AT_rich Low_complexity Low_complexity 1 43 0 1945 137 0 40 chr15 19761092 19761392 -65934362 - AluSx SINE Alu -24 288 1 1763 170 17 14 chr15 19761400 19761688 -65934066 - AluJo SINE Alu -23 289 1 21 0 0 0 chr15 19763187 19763208 -65932546 + AT_rich Low_complexity Low_complexity 1 21 0 619 202 25 8 chr15 19763351 19763470 -65932284 - FLAM_A SINE Alu -12 121 1 7031 109 19 7 chr15 19763611 19764709 -65931045 + Tigger1 DNA MER2_type 1 1111 -1307 7879 100 38 25 chr15 19765906 19766797 -65928957 + Tigger1 DNA MER2_type 1105 1983 -435 2395 80 3 0 chr15 19766797 19767098 -65928656 - AluSg SINE Alu -8 302 1 7879 100 38 25 chr15 19767098 19767295 -65928459 + Tigger1 DNA MER2_type 1983 2176 -242 2079 136 7 3 chr15 19767295 19767605 -65928149 - AluJb SINE Alu -1 311 1 7879 100 38 25 chr15 19767605 19767699 -65928055 + Tigger1 DNA MER2_type 2176 2267 -151 2233 124 0 0 chr15 19767699 19767997 -65927757 - AluSx SINE Alu -14 298 1 7879 100 38 25 chr15 19767997 19768110 -65927644 + Tigger1 DNA MER2_type 2267 2418 0 749 44 0 0 chr15 19769665 19769755 -65925999 + AluY SINE Alu 208 297 -14 22 56 0 0 chr15 19769790 19769826 -65925928 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr15 19769837 19769858 -65925896 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 19770318 19770344 -65925410 + AT_rich Low_complexity Low_complexity 1 26 0 1944 151 0 10 chr15 19770423 19770722 -65925032 - AluY SINE Alu -15 296 1 204 208 146 0 chr15 19771038 19771086 -65924668 - L2 LINE L2 -2 3270 3216 2182 127 0 0 chr15 19772189 19772481 -65923273 - AluSx SINE Alu -20 292 1 439 304 41 35 chr15 19772984 19773155 -65922599 + MER5A DNA MER1_type 2 173 -16 302 184 109 34 chr15 19773170 19773187 -65922567 - L1MA10 LINE L1 0 6334 6318 1645 217 102 2 chr15 19773187 19773620 -65922134 - L1ME2 LINE L1 -10 6154 5679 251 230 20 60 chr15 19773715 19773815 -65921939 + MIR SINE MIR 121 216 -46 432 289 16 16 chr15 19774608 19774729 -65921025 - MER5A DNA MER1_type -8 181 61 1391 103 5 5 chr15 19774754 19774939 -65920815 - AluSq SINE Alu -128 185 1 184 186 85 34 chr15 19774939 19774998 -65920756 + MER5A DNA MER1_type 127 188 -1 340 281 14 29 chr15 19775951 19776090 -65919664 - MLT1I LTR MaLR -205 204 68 1860 105 126 4 chr15 19776281 19776558 -65919196 + AluSx SINE Alu 2 312 0 219 36 0 0 chr15 19777602 19777630 -65918124 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1943 132 0 0 chr15 19777632 19777912 -65917842 - AluSx SINE Alu -32 280 1 319 244 127 41 chr15 19778233 19778430 -65917324 - L1ME LINE L1 -333 5788 5575 3778 118 12 60 chr15 19778486 19778876 -65916878 - L1MB3 LINE L1 -16 6167 5823 261 0 0 0 chr15 19778876 19778905 -65916849 + (TG)n Simple_repeat Simple_repeat 2 30 0 3778 118 12 60 chr15 19778905 19779201 -65916553 - L1MB3 LINE L1 -360 5823 5514 2116 129 0 7 chr15 19780163 19780472 -65915282 + AluJb SINE Alu 1 307 -5 1723 160 4 0 chr15 19780474 19780743 -65915011 + AluJo SINE Alu 43 312 0 198 0 0 0 chr15 19781253 19781275 -65914479 + (CA)n Simple_repeat Simple_repeat 2 23 0 187 321 143 0 chr15 19781441 19781553 -65914201 - MIR SINE MIR -13 249 122 542 234 63 54 chr15 19781956 19782161 -65913593 - L1ME1 LINE L1 -7 6159 5953 1019 194 23 0 chr15 19782398 19782573 -65913181 + MER5A DNA MER1_type 7 185 -4 1603 217 70 44 chr15 19782759 19783059 -65912695 - L1MC5 LINE L1 -36 7925 7634 252 86 0 0 chr15 19783059 19783094 -65912660 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1603 217 70 44 chr15 19783094 19783452 -65912302 - L1MC5 LINE L1 -327 7634 7250 523 225 35 126 chr15 19783525 19783756 -65911998 + MER63A DNA MER1_type 1 210 0 808 197 34 66 chr15 19783775 19784111 -65911643 - L1MC4 LINE L1 -733 7228 6920 795 245 21 117 chr15 19784113 19784318 -65911436 - L1MC4 LINE L1 -1003 7039 6885 4286 82 22 8 chr15 19784318 19784939 -65910815 - L1MA2 LINE L1 0 6304 5675 795 245 21 117 chr15 19784939 19785108 -65910646 - L1MC4 LINE L1 -1157 6885 6701 2129 125 7 0 chr15 19785191 19785486 -65910268 - AluSx SINE Alu -15 297 1 1235 149 104 36 chr15 19785486 19785794 -65909960 - L1MA2 LINE L1 -684 5607 5279 829 210 55 22 chr15 19786468 19786649 -65909105 + AluJo SINE Alu 92 278 -34 348 24 0 0 chr15 19786652 19786693 -65909061 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2005 116 43 6 chr15 19786959 19787286 -65908468 + MER44D DNA MER2_type 1 609 0 309 267 87 50 chr15 19787573 19787734 -65908020 - L1ME4a LINE L1 -19 6102 5936 2168 93 7 10 chr15 19787750 19788070 -65907684 - AluSq SINE Alu 0 319 1 422 227 101 47 chr15 19788086 19788240 -65907514 - L1ME4a LINE L1 -175 5946 5802 2003 130 20 3 chr15 19788240 19788541 -65907213 - AluSx SINE Alu -6 306 1 2241 111 0 0 chr15 19788542 19788840 -65906914 - AluSx SINE Alu -14 298 1 422 227 101 47 chr15 19788840 19789000 -65906754 - L1ME4a LINE L1 -318 5803 5613 320 160 296 64 chr15 19789056 19789181 -65906573 + L2 LINE L2 3160 3313 0 22 0 0 0 chr15 19789286 19789308 -65906446 + AT_rich Low_complexity Low_complexity 1 22 0 341 270 146 0 chr15 19789575 19789609 -65906145 - MER5A DNA MER1_type -29 160 132 2592 56 0 0 chr15 19789609 19789915 -65905839 + AluY SINE Alu 1 306 -5 341 270 146 0 chr15 19789915 19790017 -65905737 - MER5A DNA MER1_type -57 132 4 820 196 0 20 chr15 19790376 19790580 -65905174 - L1M1 LINE L1 -4364 3201 3002 1193 157 0 11 chr15 19790585 19790763 -65904991 - AluJo SINE Alu -131 181 6 7274 189 45 46 chr15 19790765 19791560 -65904194 - L1M1 LINE L1 -4526 3039 2245 2399 76 0 0 chr15 19791560 19791897 -65903857 + AluY SINE Alu 1 337 0 7274 189 45 46 chr15 19791897 19792663 -65903091 - L1M1 LINE L1 -5320 2245 1480 6995 56 17 17 chr15 19792663 19794278 -65901476 - SVA Other Other -723 1386 5 7274 189 45 46 chr15 19794278 19795351 -65900403 - L1M1 LINE L1 -6085 1480 16 356 175 75 12 chr15 19795468 19795548 -65900206 - MER21B LTR ERV1 -778 85 1 1668 189 14 14 chr15 19795771 19796126 -65899628 - MER4D LTR ERV1 0 903 549 1318 134 10 0 chr15 19796190 19796399 -65899355 - MER49 LTR ERV1 -663 260 50 1017 169 49 63 chr15 19796401 19796856 -65898898 - MER65-int LTR ERV1 -2111 4021 2480 368 123 12 62 chr15 19796941 19797022 -65898732 - MER65-int LTR ERV1 -2868 3730 3654 2284 114 0 3 chr15 19797114 19797412 -65898342 + AluSx SINE Alu 1 297 -15 295 243 39 10 chr15 19797413 19797516 -65898238 - MER65-int LTR ERV1 -1831 3049 2944 2313 103 0 6 chr15 19797675 19797987 -65897767 - AluY SINE Alu -1 310 1 2061 204 52 44 chr15 19798059 19798830 -65896924 - MER65-int LTR ERV1 -2378 2493 1725 1681 122 118 8 chr15 19799006 19799268 -65896486 + AluSg1 SINE Alu 1 291 -18 390 356 100 26 chr15 19799323 19799674 -65896080 + L2 LINE L2 2585 2961 -353 249 248 54 114 chr15 19799868 19799916 -65895838 + L2 LINE L2 3169 3218 -95 1999 121 10 26 chr15 19799916 19800223 -65895531 - AluSx SINE Alu -7 305 4 249 248 54 114 chr15 19800223 19800323 -65895431 + L2 LINE L2 3218 3308 -5 689 268 22 6 chr15 19800626 19800809 -65894945 - MIR SINE MIR -56 206 21 824 229 12 12 chr15 19800823 19800993 -65894761 + MER5B DNA MER1_type 7 176 -2 722 173 86 25 chr15 19801007 19801169 -65894585 + MER5B DNA MER1_type 1 172 -6 29 0 0 0 chr15 19801213 19801242 -65894512 + AT_rich Low_complexity Low_complexity 1 29 0 11404 50 1 6 chr15 19801762 19803266 -65892488 + L1P LINE L1 9 1504 -4642 6691 31 5 5 chr15 19803272 19804076 -65891678 + L1PA3 LINE L1 5352 6155 0 252 143 0 0 chr15 19804335 19804377 -65891377 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 212 273 0 0 chr15 19805023 19805067 -65890687 + L2 LINE L2 3019 3062 -251 702 167 25 0 chr15 19805181 19805301 -65890453 + FLAM_A SINE Alu 3 125 -8 414 200 0 12 chr15 19805471 19805551 -65890203 + Tigger3(Golem) DNA MER2_type 4 82 -2947 476 209 136 0 chr15 19805552 19805662 -65890092 + Tigger3(Golem) DNA MER2_type 2905 3029 0 2208 120 0 0 chr15 19806192 19806484 -65889270 - AluSx SINE Alu -20 292 1 183 80 0 0 chr15 19806581 19806606 -65889148 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1988 154 7 0 chr15 19807570 19807863 -65887891 - AluSx SINE Alu -17 295 1 2370 105 0 0 chr15 19808502 19808815 -65886939 - AluSq SINE Alu 0 313 1 873 250 241 35 chr15 19808957 19809857 -65885897 + L2 LINE L2 2200 3313 0 251 215 7 104 chr15 19811309 19811444 -65884310 + (CGGGG)n Simple_repeat Simple_repeat 3 124 0 339 244 38 0 chr15 19811690 19811821 -65883933 + G-rich Low_complexity Low_complexity 4 139 0 285 274 195 18 chr15 19812393 19812506 -65883248 + MIR SINE MIR 124 256 -6 26 0 0 0 chr15 19812720 19812746 -65883008 + AT_rich Low_complexity Low_complexity 1 26 0 2319 101 0 0 chr15 19813333 19813631 -65882123 - AluSx SINE Alu -14 298 1 324 298 67 19 chr15 19813886 19813990 -65881764 + L1MC4 LINE L1 6593 6701 -1341 189 189 19 0 chr15 19814066 19814119 -65881635 - MER5C DNA MER1_type -34 290 237 549 183 78 0 chr15 19814142 19814257 -65881497 - MER5C DNA MER1_type -200 124 1 823 197 112 5 chr15 19814467 19814655 -65881099 - MER58A DNA MER1_type -16 208 1 2437 105 0 3 chr15 19814856 19815169 -65880585 + AluSx SINE Alu 1 312 0 24 32 0 0 chr15 19816571 19816602 -65879152 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr15 19817408 19817430 -65878324 + (T)n Simple_repeat Simple_repeat 1 22 0 1278 222 135 36 chr15 19817824 19818454 -65877300 - L1MC4 LINE L1 0 8042 7351 2084 97 76 0 chr15 19819139 19819427 -65876327 + AluSg SINE Alu 1 310 0 279 0 0 0 chr15 19820111 19820142 -65875612 + (T)n Simple_repeat Simple_repeat 1 31 0 2393 104 0 7 chr15 19822344 19822652 -65873102 - AluSx SINE Alu -6 306 1 1888 146 113 28 chr15 19822888 19823285 -65872469 + MSTB1 LTR MaLR 1 431 -1 2893 54 8 0 chr15 19823836 19824188 -65871566 + THE1A LTR MaLR 1 355 0 12106 86 13 3 chr15 19824188 19825751 -65870003 + THE1A-int LTR MaLR 1 1580 0 2444 97 41 0 chr15 19825751 19826092 -65869662 + THE1A LTR MaLR 1 355 0 500 331 75 41 chr15 19826466 19826882 -65868872 + L1ME LINE L1 5213 5661 -509 2372 87 0 3 chr15 19826882 19827180 -65868574 - AluY SINE Alu -14 297 1 500 331 75 41 chr15 19827180 19827337 -65868417 + L1ME LINE L1 5661 5811 -359 22 0 0 0 chr15 19827390 19827412 -65868342 + AT_rich Low_complexity Low_complexity 1 22 0 303 351 48 65 chr15 19828453 19828701 -65867053 + L2 LINE L2 2943 3186 -86 342 295 187 0 chr15 19828758 19828924 -65866830 + MIR SINE MIR 65 261 -1 207 247 274 0 chr15 19829579 19829652 -65866102 + MIR SINE MIR 84 176 -86 226 125 0 0 chr15 19829668 19829708 -65866046 - Alu SINE Alu -4 298 259 839 256 16 36 chr15 19829793 19830016 -65865738 + MIR SINE MIR 45 262 0 203 333 26 0 chr15 19830026 19830140 -65865614 + L2 LINE L2 1575 1691 -1623 322 336 53 48 chr15 19830257 19830674 -65865080 + L2 LINE L2 1992 2410 -904 798 163 20 20 chr15 19830839 19830986 -65864768 + MER5B DNA MER1_type 1 147 -31 240 105 53 0 chr15 19830986 19831024 -65864730 + MER57A LTR ERV1 294 333 -70 280 149 21 0 chr15 19831044 19831091 -65864663 - MER5B DNA MER1_type -129 49 2 269 282 84 64 chr15 19831100 19831302 -65864452 + L2 LINE L2 2654 2859 -455 187 327 0 0 chr15 19831329 19831381 -65864373 - L2 LINE L2 -661 2653 2602 574 178 107 71 chr15 19831392 19831463 -65864291 - MER5B DNA MER1_type -3 175 108 2341 106 0 0 chr15 19831463 19831765 -65863989 - AluSx SINE Alu -10 302 1 574 178 107 71 chr15 19831765 19831862 -65863892 - MER5B DNA MER1_type -70 108 1 202 268 71 0 chr15 19831915 19831971 -65863783 + MER5B DNA MER1_type 50 109 -69 249 256 58 47 chr15 19831974 19832060 -65863694 + L2 LINE L2 2930 3016 -256 213 67 0 0 chr15 19832221 19832251 -65863503 + L2 LINE L2 3284 3313 0 452 178 59 40 chr15 19833047 19833148 -65862606 + MER20 DNA MER1_type 117 219 0 217 139 0 0 chr15 19833827 19833863 -65861891 - MIR SINE MIR -11 251 216 212 189 0 0 chr15 19833830 19833867 -65861887 - L2 LINE L2 -20 3293 3257 * 378 310 28 7 chr15 19835600 19835745 -65860009 + MER5A DNA MER1_type 6 153 -36 268 249 141 104 chr15 19836819 19837116 -65858638 - L2 LINE L2 -18 3254 2947 1922 145 14 14 chr15 19837852 19838149 -65857605 + AluJo SINE Alu 1 297 -15 2430 105 0 3 chr15 19838151 19838465 -65857289 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 19839185 19839206 -65856548 + AT_rich Low_complexity Low_complexity 1 21 0 430 180 0 0 chr15 19840651 19840733 -65855021 + MER69 DNA AcHobo 2442 2523 -3 378 274 37 30 chr15 19841582 19841717 -65854037 + MIR SINE MIR 125 260 -2 2347 93 20 3 chr15 19841754 19842056 -65853698 - AluSq SINE Alu -6 307 1 665 211 114 63 chr15 19842566 19842803 -65852951 + MIR SINE MIR 14 262 0 330 267 89 10 chr15 19842921 19843022 -65852732 - MIR3 SINE MIR -9 199 91 2191 118 158 13 chr15 19843154 19843528 -65852226 + MSTA LTR MaLR 1 428 0 275 291 124 78 chr15 19844415 19844721 -65851033 + L2 LINE L2 2953 3272 0 1809 207 17 34 chr15 19845110 19845526 -65850228 + MER63B DNA MER1_type 19 427 -9 2386 71 3 3 chr15 19845731 19846026 -65849728 + AluSc SINE Alu 1 295 -14 296 237 35 41 chr15 19846535 19846704 -65849050 + (CACCAT)n Simple_repeat Simple_repeat 5 172 0 * 358 232 18 36 chr15 19846596 19846764 -65848990 + (CCA)n Simple_repeat Simple_repeat 1 165 0 216 0 0 0 chr15 19847887 19847911 -65847843 + (A)n Simple_repeat Simple_repeat 1 24 0 2215 91 28 3 chr15 19847932 19848219 -65847535 + AluSq SINE Alu 7 300 -13 399 313 60 25 chr15 19848315 19848683 -65847071 + L1MC4a LINE L1 4280 4660 -1486 897 259 68 29 chr15 19848783 19849105 -65846649 + L1MC4a LINE L1 4854 5162 -1133 2200 101 0 7 chr15 19849105 19849401 -65846353 + AluSg SINE Alu 5 298 -12 897 259 68 29 chr15 19849401 19849746 -65846008 + L1MC4a LINE L1 5162 5552 -743 1919 155 24 0 chr15 19849763 19850059 -65845695 + AluSx SINE Alu 1 303 -9 1302 172 96 33 chr15 19850122 19850454 -65845300 - MLT1B LTR MaLR -37 353 1 444 46 15 0 chr15 19850503 19850568 -65845186 + MER41A LTR ERV1 401 466 -88 848 249 36 68 chr15 19850587 19850844 -65844910 + L1MC4a LINE L1 5612 5855 -1953 2107 129 10 0 chr15 19850844 19851139 -65844615 - AluJo SINE Alu -14 298 1 848 249 36 68 chr15 19851139 19851246 -65844508 + L1MC4a LINE L1 5855 5964 -1844 420 309 61 93 chr15 19851600 19851878 -65843876 - L2 LINE L2 -18 3254 2986 4227 140 41 26 chr15 19851885 19853180 -65842574 - LTR12 LTR ERV1 0 1522 6 815 292 132 32 chr15 19853204 19853553 -65842201 - L2 LINE L2 -357 2957 2549 2491 82 0 0 chr15 19853553 19853856 -65841898 + AluSx SINE Alu 1 303 -9 815 292 132 32 chr15 19853856 19853969 -65841785 - L2 LINE L2 -765 2549 2449 205 290 51 72 chr15 19853977 19854115 -65841639 - MIR SINE MIR -24 238 104 235 253 114 0 chr15 19854331 19854410 -65841344 - MIR SINE MIR -84 124 37 318 363 53 29 chr15 19854499 19854670 -65841084 + L1MEd LINE L1 2 176 -5943 2028 102 33 53 chr15 19854882 19855010 -65840744 + AluSp SINE Alu 1 130 -183 180 0 0 0 chr15 19855010 19855030 -65840724 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2028 102 33 53 chr15 19855030 19855204 -65840550 + AluSp SINE Alu 130 297 -16 194 278 0 0 chr15 19855952 19855988 -65839766 + MIR SINE MIR 80 115 -147 293 319 55 0 chr15 19856501 19856592 -65839162 + L2 LINE L2 3217 3312 -1 588 238 78 121 chr15 19856865 19857286 -65838468 + L2 LINE L2 2870 3272 0 2869 3 0 0 chr15 19857606 19857907 -65837847 - AluYa5 SINE Alu -10 301 1 710 172 57 73 chr15 19858416 19858608 -65837146 + L2 LINE L2 3124 3312 -1 603 183 70 49 chr15 19858981 19859123 -65836631 - L2 LINE L2 0 3313 3169 1725 159 36 67 chr15 19859838 19860229 -65835525 + MER34B LTR ERV1 11 389 -176 432 270 140 17 chr15 19860356 19860534 -65835220 - MIR3 SINE MIR -7 201 2 405 273 14 43 chr15 19861126 19861265 -65834489 - MIR3 SINE MIR -68 140 6 426 116 12 23 chr15 19861318 19861404 -65834350 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 403 317 25 12 chr15 19862108 19862127 -65833627 - MIR SINE MIR -98 164 147 189 0 0 0 chr15 19862127 19862148 -65833606 + (TTC)n Simple_repeat Simple_repeat 1 21 0 403 317 25 12 chr15 19862148 19862289 -65833465 - MIR SINE MIR -115 147 2 2237 125 0 7 chr15 19862750 19863054 -65832700 + AluSx SINE Alu 1 302 -10 896 286 29 7 chr15 19863240 19863516 -65832238 + LTR16C LTR ERVL 3 284 -207 437 172 189 8 chr15 19863535 19863615 -65832139 + MER53 DNA DNA 1 65 -124 896 213 0 6 chr15 19863615 19863779 -65831975 - FRAM SINE Alu -3 163 1 437 172 189 8 chr15 19863779 19863820 -65831934 + MER53 DNA DNA 65 144 -45 571 239 48 6 chr15 19863851 19864018 -65831736 + LTR16C LTR ERVL 316 489 -2 1544 200 29 0 chr15 19865465 19865745 -65830009 + AluJo SINE Alu 1 288 -24 3974 124 39 19 chr15 19865981 19866617 -65829137 + MER39B LTR ERV1 1 649 -4 216 196 0 20 chr15 19866772 19866823 -65828931 + G-rich Low_complexity Low_complexity 3 52 0 1831 58 0 27 chr15 19867780 19868005 -65827749 - AluSx SINE Alu -93 219 1 632 270 102 0 chr15 19868097 19868293 -65827461 - MIR SINE MIR 0 262 47 295 313 0 0 chr15 19868336 19868432 -65827322 - L1ME4a LINE L1 -210 5911 5816 256 329 121 7 chr15 19868441 19868590 -65827164 - L1ME4a LINE L1 -364 5757 5592 192 256 139 66 chr15 19869692 19869829 -65825925 + L2 LINE L2 2125 2271 -1043 393 298 147 40 chr15 19869902 19870100 -65825654 - MIR SINE MIR -30 232 14 208 300 0 0 chr15 19870360 19870410 -65825344 + L2 LINE L2 3214 3263 -9 1932 122 0 51 chr15 19870852 19871147 -65824607 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr15 19871147 19871169 -65824585 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 272 296 104 35 chr15 19872156 19872386 -65823368 + L1MC5 LINE L1 7331 7576 -385 892 186 23 0 chr15 19872447 19872624 -65823130 + L1MC3 LINE L1 7236 7416 -369 * 1340 241 131 88 chr15 19872616 19873014 -65822740 + L1MEc LINE L1 220 600 -5796 1757 119 0 0 chr15 19873014 19873250 -65822504 + AluSq SINE Alu 73 308 -5 1340 241 131 88 chr15 19873250 19873462 -65822292 + L1MEc LINE L1 600 801 -5595 607 140 20 0 chr15 19873462 19873562 -65822192 + L1PA16 LINE L1 6056 6157 -9 1340 241 131 88 chr15 19873562 19873746 -65822008 + L1MEc LINE L1 801 1049 -5347 767 62 0 0 chr15 19873750 19873846 -65821908 + HY3 scRNA scRNA 5 100 -1 2193 117 17 0 chr15 19874239 19874538 -65821216 - AluY SINE Alu -7 304 1 215 250 173 58 chr15 19874614 19874718 -65821036 - MIR SINE MIR -1 261 146 1508 183 21 3 chr15 19875325 19875614 -65820140 - L1MB7 LINE L1 -10 6174 5881 290 271 47 0 chr15 19876002 19876087 -65819667 + MIR SINE MIR 98 186 -76 311 239 42 0 chr15 19876235 19876306 -65819448 + MIR SINE MIR 119 192 -70 1097 255 24 0 chr15 19876313 19876564 -65819190 - MIR SINE MIR -5 257 1 285 196 0 0 chr15 19876571 19876622 -65819132 + MIR SINE MIR 211 261 -1 214 278 56 83 chr15 19876719 19876827 -65818927 + L2 LINE L2 3168 3272 0 2329 92 0 7 chr15 19878378 19878682 -65817072 - AluSg SINE Alu -8 302 1 326 307 106 38 chr15 19880214 19880478 -65815276 + L2 LINE L2 2988 3269 -3 638 300 99 69 chr15 19880560 19881108 -65814646 + L2 LINE L2 2710 3271 -1 2198 141 0 0 chr15 19881118 19881430 -65814324 + AluJb SINE Alu 1 312 0 337 261 180 43 chr15 19881889 19882100 -65813654 + L1ME4a LINE L1 5879 6118 -3 524 198 119 2 chr15 19882994 19883140 -65812614 - MIR SINE MIR -47 161 3 466 330 6 0 chr15 19883178 19883360 -65812394 + L1ME LINE L1 5618 5800 -321 344 62 0 0 chr15 19883542 19883590 -65812164 - MADE1 DNA Mariner 0 80 33 346 123 0 0 chr15 19883591 19883648 -65812106 + L1PA15 LINE L1 5984 6040 -125 5387 55 1 1 chr15 19883648 19884308 -65811446 + L1PA5 LINE L1 5495 6154 0 841 150 0 36 chr15 19884329 19884469 -65811285 + L1PA15 LINE L1 6023 6157 -8 182 61 0 30 chr15 19884921 19884954 -65810800 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 262 102 73 chr15 19885346 19885552 -65810202 + L1ME LINE L1 5694 5826 -295 423 248 51 33 chr15 19886681 19886844 -65808910 + MIR SINE MIR 51 212 -50 2623 61 0 0 chr15 19887144 19887455 -65808299 - AluY SINE Alu 0 311 1 5865 185 70 6 chr15 19888503 19888571 -65807183 + L1MB7 LINE L1 3921 3983 -2201 2032 88 0 0 chr15 19888571 19888821 -65806933 + AluSg1 SINE Alu 1 250 -59 5865 185 70 6 chr15 19888821 19890863 -65804891 + L1MB7 LINE L1 3983 6176 -8 518 278 28 56 chr15 19891104 19891284 -65804470 - MIR SINE MIR -5 257 83 557 281 83 20 chr15 19891763 19892016 -65803738 + L1MC4a LINE L1 5643 5911 -1897 21 0 0 0 chr15 19892182 19892203 -65803551 + AT_rich Low_complexity Low_complexity 1 21 0 566 311 28 0 chr15 19892480 19892657 -65803097 - MIR3 SINE MIR -7 201 20 202 182 167 61 chr15 19895732 19895798 -65799956 + L2 LINE L2 3209 3281 -32 604 302 73 0 chr15 19895835 19896027 -65799727 - MIR SINE MIR -37 225 20 250 249 165 45 chr15 19897057 19897171 -65798583 + MIR3 SINE MIR 29 161 -47 6369 82 7 1 chr15 19897372 19898027 -65797727 - L1PA14 LINE L1 0 6161 5511 212 0 36 0 chr15 19898027 19898055 -65797699 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6369 82 7 1 chr15 19898055 19898836 -65796918 - L1PA14 LINE L1 -650 5511 4706 22 88 0 0 chr15 19898844 19898901 -65796853 + AT_rich Low_complexity Low_complexity 1 57 0 2099 116 7 3 chr15 19898908 19899216 -65796538 - AluSx SINE Alu 0 309 1 319 190 0 147 chr15 19899219 19899335 -65796419 - MIR SINE MIR -50 212 114 236 214 214 0 chr15 19899683 19899767 -65795987 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 19899775 19899807 -65795947 + GA-rich Low_complexity Low_complexity 3 35 0 2245 107 3 0 chr15 19899830 19900129 -65795625 - AluSq SINE Alu -13 300 1 2293 103 0 34 chr15 19900584 19900949 -65794805 + AluSg SINE Alu 1 354 0 188 232 18 54 chr15 19900991 19901103 -65794651 + GA-rich Low_complexity Low_complexity 3 110 0 21 0 0 0 chr15 19901193 19901214 -65794540 + AT_rich Low_complexity Low_complexity 1 21 0 5775 104 9 3 chr15 19901923 19903384 -65792370 - L1PA14 LINE L1 0 6161 4706 22 88 0 0 chr15 19903392 19903449 -65792305 + AT_rich Low_complexity Low_complexity 1 57 0 2099 116 7 3 chr15 19903456 19903764 -65791990 - AluSx SINE Alu 0 309 1 319 190 0 147 chr15 19903767 19903883 -65791871 - MIR SINE MIR -50 212 114 236 214 214 0 chr15 19904231 19904315 -65791439 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 19904323 19904355 -65791399 + GA-rich Low_complexity Low_complexity 3 35 0 2165 117 3 0 chr15 19904379 19904678 -65791076 - AluSq SINE Alu -13 300 1 2267 104 0 35 chr15 19905133 19905451 -65790303 + AluSg SINE Alu 1 307 -3 329 250 0 10 chr15 19905518 19905622 -65790132 + GA-rich Low_complexity Low_complexity 2 104 0 333 273 8 23 chr15 19905870 19906002 -65789752 + L1ME4a LINE L1 5992 6121 0 2207 81 11 7 chr15 19906062 19906370 -65789384 + AluSq SINE Alu 1 309 0 245 283 66 28 chr15 19908077 19908183 -65787571 - MIR3 SINE MIR -96 112 3 251 299 13 13 chr15 19908290 19908367 -65787387 + L2 LINE L2 3232 3308 -5 1720 161 41 17 chr15 19909083 19909375 -65786379 - AluJo SINE Alu -13 299 1 248 254 254 0 chr15 19910675 19910793 -65784961 + MIR SINE MIR 24 171 -91 231 195 0 0 chr15 19910848 19910889 -65784865 + (CACCAT)n Simple_repeat Simple_repeat 2 42 0 2278 108 3 0 chr15 19910963 19911259 -65784495 + AluSq SINE Alu 1 297 -16 2018 113 22 92 chr15 19911305 19911675 -65784079 - LTR3b LTR ERVK 0 500 157 670 233 88 15 chr15 19911714 19911932 -65783822 - MIR SINE MIR -11 251 18 495 170 18 9 chr15 19912033 19912145 -65783609 - MER53 DNA DNA -8 181 69 * 769 129 74 49 chr15 19912143 19912306 -65783448 - MER53 DNA DNA -22 167 1 380 241 54 96 chr15 19912829 19912995 -65782759 - MIR SINE MIR -48 214 56 903 224 120 100 chr15 19913344 19913391 -65782363 - L1MC4 LINE L1 0 8042 7997 2301 81 0 0 chr15 19913391 19913689 -65782065 + AluY SINE Alu 1 298 -13 903 224 120 100 chr15 19913689 19914099 -65781655 - L1MC4 LINE L1 -45 7997 7570 484 149 0 0 chr15 19914099 19914186 -65781568 - L1PB4 LINE L1 0 6156 6070 903 224 120 100 chr15 19914186 19914286 -65781468 - L1MC4 LINE L1 -472 7570 7473 398 190 116 15 chr15 19914392 19914518 -65781236 - MIR SINE MIR -50 212 73 2102 94 31 0 chr15 19914548 19914834 -65780920 + AluSx SINE Alu 1 295 -17 189 195 0 0 chr15 19914966 19915007 -65780747 + (CA)n Simple_repeat Simple_repeat 2 42 0 1252 82 22 27 chr15 19915877 19916061 -65779693 + AluSg SINE Alu 1 183 -127 770 70 0 0 chr15 19916079 19916179 -65779575 - L1PA14 LINE L1 -3 6158 6059 234 62 0 0 chr15 19916458 19916490 -65779264 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 247 14 0 chr15 19917798 19917871 -65777883 + MIR SINE MIR 77 150 -112 253 200 5 185 chr15 19919079 19919274 -65776480 + L1MC5 LINE L1 7619 7778 -183 1899 120 46 0 chr15 19919278 19919562 -65776192 + AluSx SINE Alu 2 298 -14 1594 193 33 30 chr15 19919617 19919685 -65776069 - MER58B DNA MER1_type -2087 333 267 13163 35 2 0 chr15 19919685 19922013 -65773741 - L1PA4 LINE L1 -1 6154 3825 1594 193 33 30 chr15 19922013 19922276 -65773478 - MER58B DNA MER1_type -2153 267 1 285 214 30 92 chr15 19922281 19922412 -65773342 + L1MC5 LINE L1 7809 7931 -30 537 261 137 43 chr15 19922931 19923253 -65772501 - L1ME4a LINE L1 -1 6120 5769 587 275 12 12 chr15 19923684 19923844 -65771910 + MIR SINE MIR 66 225 -37 285 191 0 63 chr15 19924336 19924462 -65771292 + G-rich Low_complexity Low_complexity 2 119 0 670 279 97 13 chr15 19925363 19925600 -65770154 + MIR SINE MIR 6 262 0 419 188 141 0 chr15 19925725 19925810 -65769944 + MER20 DNA MER1_type 1 97 -122 906 203 5 28 chr15 19925927 19926144 -65769610 - AluJo SINE Alu -17 295 84 369 293 48 104 chr15 19926180 19926332 -65769422 - L3 LINE CR1 -875 702 578 1926 141 10 0 chr15 19926332 19926637 -65769117 + AluSx SINE Alu 1 308 -4 369 293 48 104 chr15 19926637 19926819 -65768935 - L3 LINE CR1 -999 578 387 351 269 92 7 chr15 19926975 19927116 -65768638 - MER112 DNA MER1_type -6 254 102 2437 63 0 0 chr15 19927167 19927469 -65768285 + AluY SINE Alu 1 302 -9 201 231 15 62 chr15 19927843 19927908 -65767846 + L2 LINE L2 1845 1906 -1408 2139 115 3 0 chr15 19928197 19928674 -65767080 + AluSg SINE Alu 1 478 0 195 314 64 57 chr15 19928772 19928912 -65766842 + L2 LINE L2 2995 3135 -178 353 283 288 16 chr15 19929011 19929202 -65766552 - MIR SINE MIR -4 258 16 360 204 50 99 chr15 19929426 19929498 -65766256 + L1ME4a LINE L1 5535 5609 -512 2183 75 7 0 chr15 19929498 19929812 -65765942 + AluSc SINE Alu 1 316 0 360 204 50 99 chr15 19929812 19929918 -65765836 + L1ME4a LINE L1 5609 5706 -415 240 255 85 0 chr15 19930108 19930202 -65765552 + L1ME4a LINE L1 6007 6108 -13 281 385 46 6 chr15 19930233 19930407 -65765347 - L2 LINE L2 -571 2743 2563 182 280 40 40 chr15 19930927 19931027 -65764727 + L2 LINE L2 2752 2851 -463 556 275 74 37 chr15 19931268 19931457 -65764297 - MIR SINE MIR -54 208 13 2300 59 0 14 chr15 19931543 19931833 -65763921 + AluY SINE Alu 1 286 -25 1640 179 0 3 chr15 19932003 19932304 -65763450 - AluJb SINE Alu -10 302 3 2247 106 0 0 chr15 19932371 19932682 -65763072 + AluSx SINE Alu 1 311 -1 2354 133 12 31 chr15 19933888 19934303 -65761451 + L1MA5 LINE L1 5894 6300 0 22 35 0 0 chr15 19935017 19935046 -65760708 + AT_rich Low_complexity Low_complexity 1 29 0 2104 112 3 0 chr15 19935083 19935378 -65760376 - AluSx SINE Alu -8 304 9 242 343 82 8 chr15 19935813 19935947 -65759807 - L2 LINE L2 -1 3312 3169 1960 127 0 0 chr15 19935948 19936231 -65759523 + AluSx SINE Alu 1 283 -29 471 113 0 0 chr15 19936233 19936313 -65759441 + (CA)n Simple_repeat Simple_repeat 2 81 0 184 379 52 0 chr15 19937110 19937226 -65758528 + L2 LINE L2 2228 2349 -965 429 264 66 71 chr15 19937337 19937534 -65758220 + MIR SINE MIR 21 216 -46 2269 78 3 0 chr15 19937636 19937929 -65757825 + AluY SINE Alu 1 294 -17 235 317 69 28 chr15 19938087 19938232 -65757522 + L2 LINE L2 2715 2865 -449 182 348 39 83 chr15 19938276 19938480 -65757274 + L2 LINE L2 2962 3156 -116 315 85 0 0 chr15 19939005 19939052 -65756702 - AluYb8 SINE Alu -1 300 254 1728 68 0 5 chr15 19939052 19939273 -65756481 - AluYb8 SINE Alu -98 220 1 512 280 117 43 chr15 19939533 19939858 -65755896 + L2 LINE L2 2502 2850 -464 992 290 94 37 chr15 19939868 19940391 -65755363 - L2 LINE L2 0 3313 2762 272 381 44 6 chr15 19940390 19940550 -65755204 + L2 LINE L2 2888 3053 -219 * 366 232 85 0 chr15 19940579 19940661 -65755093 - L2 LINE L2 0 3313 3225 895 299 67 58 chr15 19941190 19942094 -65753660 - L2 LINE L2 0 3272 2323 1619 164 0 24 chr15 19942103 19942395 -65753359 - AluJo SINE Alu -25 287 3 397 147 52 86 chr15 19942407 19942523 -65753231 + L1ME1 LINE L1 6055 6166 0 276 281 37 12 chr15 19942526 19942608 -65753146 - Charlie8 DNA MER1_type -2331 86 3 622 359 80 3 chr15 19942609 19942971 -65752783 - L2 LINE L2 -1702 1612 1223 580 285 140 56 chr15 19942980 19943238 -65752516 - MLT1J LTR MaLR -9 502 267 1867 137 40 0 chr15 19943238 19943537 -65752217 - AluSq SINE Alu -2 311 1 580 285 140 56 chr15 19943537 19943741 -65752013 - MLT1J LTR MaLR -244 267 1 210 338 107 39 chr15 19943757 19944065 -65751689 - L2 LINE L2 -2120 1194 866 382 318 126 25 chr15 19944376 19944615 -65751139 + LTR16C LTR ERVL 98 360 -131 2423 164 15 20 chr15 19944627 19944953 -65750801 - L1MB5 LINE L1 -22 6152 5827 2181 109 0 0 chr15 19944953 19945256 -65750498 - AluSx SINE Alu -9 303 1 2423 164 15 20 chr15 19945256 19945385 -65750369 - L1MB5 LINE L1 -347 5827 5699 198 279 200 0 chr15 19945429 19945569 -65750185 - L2 LINE L2 -634 2680 2513 724 153 26 0 chr15 19945576 19945718 -65750036 + L1MB7 LINE L1 5800 5944 -222 232 262 0 33 chr15 19946318 19946379 -65749375 - MER115 DNA AcHobo -631 62 4 443 293 67 18 chr15 19946437 19946601 -65749153 - MIR SINE MIR -9 253 82 1828 151 3 3 chr15 19946637 19946941 -65748813 + AluJo SINE Alu 6 309 -3 1118 115 6 0 chr15 19948057 19948222 -65747532 + FRAM SINE Alu 1 166 -10 871 127 0 0 chr15 19948514 19948640 -65747114 + FLAM_C SINE Alu 1 126 -17 2308 86 0 0 chr15 19949091 19949394 -65746360 + AluSq SINE Alu 1 303 -10 329 259 83 9 chr15 19949499 19949607 -65746147 + MIR SINE MIR 47 162 -100 194 281 43 73 chr15 19950255 19950419 -65745335 - L2 LINE L2 -51 3262 3104 1580 151 28 7 chr15 19950483 19950767 -65744987 - AluJb SINE Alu -13 299 10 195 343 0 0 chr15 19950865 19950932 -65744822 - L2 LINE L2 -310 2962 2896 1363 231 80 10 chr15 19951355 19951741 -65744013 + L2 LINE L2 2304 2716 -598 2004 113 7 10 chr15 19951746 19952056 -65743698 + AluSq SINE Alu 1 309 -4 2340 133 87 30 chr15 19952065 19952500 -65743254 + L1MC1 LINE L1 5874 6333 0 624 265 121 67 chr15 19952504 19952964 -65742790 + L2 LINE L2 2702 3313 0 235 314 68 0 chr15 19953411 19953529 -65742225 - L1 LINE L1 -1139 5007 4882 2289 79 3 0 chr15 19953776 19954067 -65741687 + AluSc SINE Alu 1 292 -17 271 197 329 0 chr15 19954921 19954997 -65740757 - L2 LINE L2 -5 3308 3208 2148 85 0 33 chr15 19955358 19955702 -65740052 + AluSx SINE Alu 1 312 0 209 188 125 100 chr15 19956780 19956860 -65738894 + MIR SINE MIR 2 83 -179 841 164 82 0 chr15 19956895 19957041 -65738713 - AluJb SINE Alu -30 282 125 847 131 7 21 chr15 19957067 19957212 -65738542 - FLAM_C SINE Alu 0 143 1 1324 167 152 11 chr15 19957478 19957741 -65738013 - AluJb SINE Alu -2 300 1 1445 258 86 40 chr15 19958130 19958230 -65737524 - LTR33 LTR ERVL -21 500 406 845 210 124 0 chr15 19958230 19958416 -65737338 + MER3 DNA MER1_type 1 209 0 1445 258 86 40 chr15 19958416 19958768 -65736986 - LTR33 LTR ERVL -115 406 27 648 344 65 45 chr15 19962678 19963250 -65732504 - L2 LINE L2 -1366 1948 1366 468 195 110 8 chr15 19963631 19963749 -65732005 + MIR SINE MIR 119 248 -14 1798 146 41 20 chr15 19964164 19964458 -65731296 + AluJb SINE Alu 1 300 -12 405 266 92 9 chr15 19964961 19965070 -65730684 - L2 LINE L2 -19 3253 3136 317 271 68 60 chr15 19965193 19965326 -65730428 - MIR SINE MIR -109 153 20 29 47 0 0 chr15 19965327 19965370 -65730384 + AT_rich Low_complexity Low_complexity 1 43 0 2176 115 7 0 chr15 19965370 19965657 -65730097 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 19965658 19965689 -65730065 + (TA)n Simple_repeat Simple_repeat 1 31 0 2067 122 7 3 chr15 19966277 19966571 -65729183 + AluSx SINE Alu 1 295 -17 1790 175 0 10 chr15 19967065 19967368 -65728386 - AluJo SINE Alu -11 301 2 2469 63 0 25 chr15 19968011 19968326 -65727428 + AluY SINE Alu 1 307 -4 250 371 161 0 chr15 19968935 19969059 -65726695 - L2 LINE L2 -27 3245 3102 537 245 122 32 chr15 19969531 19969719 -65726035 - MIR SINE MIR -57 205 1 353 225 37 126 chr15 19970286 19970477 -65725277 + LTR67 LTR ERVL 301 474 -83 858 192 40 0 chr15 19971668 19971819 -65723935 - FRAM SINE Alu -6 160 4 532 200 156 11 chr15 19972514 19972694 -65723060 + L1ME4a LINE L1 5738 5943 -178 756 154 0 0 chr15 19972696 19972806 -65722948 + AluJb SINE Alu 2 111 -201 445 121 76 0 chr15 19972828 19972894 -65722860 + AluJ/FRAM SINE Alu 218 288 -24 253 146 146 48 chr15 19972944 19972974 -65722780 + L1ME4a LINE L1 5999 6025 -96 2129 114 7 0 chr15 19972974 19973272 -65722482 - AluSx SINE Alu -8 304 5 253 146 146 48 chr15 19973272 19973344 -65722410 + L1ME4a LINE L1 6025 6111 -10 180 0 0 0 chr15 19973584 19973604 -65722150 + (A)n Simple_repeat Simple_repeat 1 20 0 1810 160 7 3 chr15 19973604 19973898 -65721856 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr15 19973944 19973966 -65721788 + AT_rich Low_complexity Low_complexity 1 22 0 889 277 113 37 chr15 19974448 19974935 -65720819 + L2 LINE L2 2773 3293 -20 474 256 210 16 chr15 19975265 19975574 -65720180 + L1ME4a LINE L1 5580 5948 -173 2234 120 10 0 chr15 19975664 19975964 -65719790 + AluSq SINE Alu 1 303 -10 984 183 174 99 chr15 19976052 19976210 -65719544 + L1MC5 LINE L1 7153 7298 -663 2324 97 0 3 chr15 19976210 19976510 -65719244 + AluY SINE Alu 1 299 -12 984 183 174 99 chr15 19976510 19976816 -65718938 + L1MC5 LINE L1 7298 7652 -309 25 143 0 0 chr15 19977727 19977769 -65717985 + AT_rich Low_complexity Low_complexity 1 42 0 2176 115 7 0 chr15 19977769 19978056 -65717698 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 19978057 19978088 -65717666 + (TA)n Simple_repeat Simple_repeat 1 31 0 2077 122 7 3 chr15 19978676 19978971 -65716783 + AluSx SINE Alu 1 296 -16 660 177 57 28 chr15 19979439 19979580 -65716174 - MER105 DNA DNA -59 145 1 1279 108 54 0 chr15 19979617 19979802 -65715952 - MER20 DNA MER1_type -24 195 1 250 261 182 0 chr15 19980026 19980114 -65715640 + L2 LINE L2 3149 3252 -20 294 293 0 13 chr15 19981494 19981569 -65714185 + MIR SINE MIR 28 101 -161 381 264 208 0 chr15 19982548 19982654 -65713100 + L2 LINE L2 3185 3312 -1 476 252 207 14 chr15 19982795 19983017 -65712737 - L2 LINE L2 -18 3295 3031 1938 87 17 45 chr15 19983426 19983713 -65712041 - AluY SINE Alu -32 279 1 1174 133 0 0 chr15 19984496 19984661 -65711093 + AluSp SINE Alu 137 301 -12 608 195 31 23 chr15 19984750 19984878 -65710876 - MER5B DNA MER1_type -49 129 1 205 239 0 22 chr15 19985377 19985423 -65710331 + L2 LINE L2 3215 3259 -13 486 180 40 0 chr15 19985739 19985839 -65709915 + MER21B LTR ERV1 749 852 -11 305 261 85 31 chr15 19985988 19986118 -65709636 + L1ME4a LINE L1 5768 5904 -217 318 132 19 0 chr15 19986288 19986341 -65709413 + L1M4 LINE L1 3995 4048 -2098 866 166 77 33 chr15 19986369 19986550 -65709204 + AluJo SINE Alu 1 189 -123 1679 157 21 7 chr15 19988169 19988456 -65707298 + AluSg SINE Alu 1 291 -19 23 0 0 0 chr15 19988566 19988589 -65707165 + AT_rich Low_complexity Low_complexity 1 23 0 2463 59 0 16 chr15 19989421 19989726 -65706028 + AluY SINE Alu 1 300 -11 282 204 0 0 chr15 19991787 19991836 -65703918 + MER103 DNA DNA 73 121 -45 436 275 198 24 chr15 19991951 19992066 -65703688 - MIR SINE MIR 0 262 168 2044 99 39 3 chr15 19992066 19992350 -65703404 - AluSp SINE Alu -19 294 1 436 275 198 24 chr15 19992350 19992441 -65703313 - MIR SINE MIR -94 168 20 1782 121 83 31 chr15 19993696 19993986 -65701768 + AluSx SINE Alu 1 305 -7 234 255 10 29 chr15 19994063 19994165 -65701589 + GA-rich Low_complexity Low_complexity 3 102 0 451 288 32 16 chr15 19994248 19994373 -65701381 - MIR SINE MIR -62 146 20 387 186 108 29 chr15 19994449 19994551 -65701203 + MER103 DNA DNA 36 145 -21 707 170 47 0 chr15 19994556 19994662 -65701092 + FLAM_A SINE Alu 6 116 -26 28 29 0 0 chr15 19994663 19994698 -65701056 + AT_rich Low_complexity Low_complexity 1 35 0 192 305 34 0 chr15 19995079 19995138 -65700616 - MIR3 SINE MIR -133 75 15 211 330 47 28 chr15 19996316 19996422 -65699332 + L2 LINE L2 2554 2661 -653 212 368 0 0 chr15 19996896 19996964 -65698790 + L3 LINE CR1 705 772 -805 234 294 106 78 chr15 19997251 19997314 -65698440 + L3b LINE CR1 1108 1168 -415 2895 3 0 3 chr15 19997314 19997626 -65698128 + AluYa5 SINE Alu 1 311 0 234 294 106 78 chr15 19997626 19997780 -65697974 + L3b LINE CR1 1168 1331 -252 27 65 0 0 chr15 20000050 20000081 -65695673 + GC_rich Low_complexity Low_complexity 1 31 0 247 278 146 35 chr15 20000356 20000500 -65695254 + MIR SINE MIR 32 191 -71 429 250 184 7 chr15 20000529 20000681 -65695073 + MIR SINE MIR 23 201 -61 242 164 18 36 chr15 20000794 20000849 -65694905 - L2 LINE L2 0 3272 3219 32 0 0 0 chr15 20001638 20001670 -65694084 + GC_rich Low_complexity Low_complexity 1 32 0 510 298 121 28 chr15 20002241 20002523 -65693231 + L2 LINE L2 3005 3312 -1 23 33 0 0 chr15 20002690 20002720 -65693034 + AT_rich Low_complexity Low_complexity 1 30 0 749 189 163 11 chr15 20002973 20003163 -65692591 - MIR SINE MIR -16 246 28 2537 52 0 13 chr15 20003166 20003474 -65692280 - AluY SINE Alu -6 305 2 276 282 0 39 chr15 20003678 20003781 -65691973 + L2 LINE L2 3180 3278 -35 2983 135 121 34 chr15 20003781 20003850 -65691904 + L1MB3 LINE L1 5539 5601 -582 1643 189 10 20 chr15 20003850 20004147 -65691607 + AluJo SINE Alu 1 294 -18 2983 135 121 34 chr15 20004147 20004437 -65691317 + L1MB3 LINE L1 5601 5864 -319 2214 107 0 0 chr15 20004437 20004726 -65691028 - AluSx SINE Alu -23 289 1 2983 135 121 34 chr15 20004726 20004951 -65690803 + L1MB3 LINE L1 5864 6175 -8 1968 139 40 3 chr15 20006864 20007165 -65688589 + AluSx SINE Alu 1 312 0 349 270 38 8 chr15 20008253 20008454 -65687300 - MIR SINE MIR 0 262 1 313 293 60 20 chr15 20008684 20008834 -65686920 + L1MB8 LINE L1 5980 6135 -43 543 269 28 33 chr15 20009205 20009387 -65686367 + L1MB7 LINE L1 5986 6166 0 2404 69 7 7 chr15 20009396 20009700 -65686054 + AluY SINE Alu 1 304 -7 382 295 95 29 chr15 20010559 20010769 -65684985 + L1ME3A LINE L1 5597 5820 -301 180 316 53 0 chr15 20010937 20010994 -65684760 + L3 LINE CR1 1509 1568 -9 898 143 0 0 chr15 20011017 20011143 -65684611 - FLAM_C SINE Alu -17 126 1 1860 226 63 95 chr15 20011427 20011491 -65684263 - L1MC4 LINE L1 -1 8041 7976 2083 118 17 0 chr15 20011491 20011788 -65683966 + AluJo SINE Alu 1 302 -10 1860 226 63 95 chr15 20011788 20011978 -65683776 - L1MC4 LINE L1 -66 7976 7781 1817 150 40 0 chr15 20011978 20012278 -65683476 + AluJo SINE Alu 1 312 0 1860 226 63 95 chr15 20012278 20012852 -65682902 - L1MC4 LINE L1 -261 7781 7239 35 0 0 0 chr15 20013003 20013038 -65682716 + AT_rich Low_complexity Low_complexity 1 35 0 1836 136 16 48 chr15 20013839 20014148 -65681606 - AluSx SINE Alu -13 299 1 544 269 185 41 chr15 20014217 20014585 -65681169 - L2 LINE L2 0 3313 2893 565 363 113 16 chr15 20014693 20015250 -65680504 - L2 LINE L2 -483 2831 2221 297 0 0 0 chr15 20016384 20016417 -65679337 + (TA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chr15 20016417 20016442 -65679312 + (T)n Simple_repeat Simple_repeat 1 25 0 2363 108 0 0 chr15 20016481 20016788 -65678966 + AluSx SINE Alu 1 307 -5 221 264 36 129 chr15 20017454 20017495 -65678259 - MER5B DNA MER1_type -3 175 132 2174 128 10 0 chr15 20017495 20017800 -65677954 - AluSx SINE Alu -4 308 1 221 264 36 129 chr15 20017800 20017886 -65677868 - MER5B DNA MER1_type -46 132 59 1880 149 3 10 chr15 20017886 20018188 -65677566 - AluJb SINE Alu -11 301 2 221 264 36 129 chr15 20018188 20018199 -65677555 - MER5B DNA MER1_type -119 59 49 1033 189 70 48 chr15 20018959 20019229 -65676525 + L1ME3A LINE L1 5895 6170 0 234 305 78 19 chr15 20019273 20019427 -65676327 - L1 LINE L1 -1796 4350 4188 483 176 22 0 chr15 20019428 20019519 -65676235 - FLAM_A SINE Alu -9 133 41 622 253 192 32 chr15 20019530 20019726 -65676028 - L1 LINE L1 -2187 3959 3796 1761 157 34 115 chr15 20019726 20020134 -65675620 - THE1C LTR MaLR 0 375 1 622 253 192 32 chr15 20020134 20020443 -65675311 - L1 LINE L1 -2350 3796 3373 2246 114 10 0 chr15 20020539 20020846 -65674908 - AluSx SINE Alu -2 310 1 880 156 6 220 chr15 20020873 20021232 -65674522 - AluJo SINE Alu -30 282 1 1751 169 0 24 chr15 20021237 20021533 -65674221 - AluJo SINE Alu -18 294 6 1453 169 0 0 chr15 20021533 20021758 -65673996 - 7SLRNA srpRNA srpRNA -92 228 4 33 0 0 0 chr15 20021771 20021804 -65673950 + AT_rich Low_complexity Low_complexity 1 33 0 2039 143 0 13 chr15 20021806 20022106 -65673648 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr15 20022113 20022158 -65673596 + (CA)n Simple_repeat Simple_repeat 2 46 0 316 278 31 10 chr15 20022308 20022405 -65673349 - L1 LINE L1 -3148 2998 2900 234 281 21 10 chr15 20022419 20022515 -65673239 - L1 LINE L1 -3329 2817 2721 2176 108 0 3 chr15 20022517 20022836 -65672918 - AluSx SINE Alu 0 312 1 256 262 33 16 chr15 20022836 20022902 -65672852 - L1 LINE L1 -3769 2377 2312 991 193 41 78 chr15 20022902 20023243 -65672511 - L1ME1 LINE L1 -164 6002 2254 1768 80 0 4 chr15 20023250 20023476 -65672278 - AluSc SINE Alu -14 295 71 3391 34 0 0 chr15 20023486 20023865 -65671889 - L1PA4 LINE L1 -3 6152 5774 443 119 0 0 chr15 20023880 20023939 -65671815 - AluSc SINE Alu -224 85 27 1094 204 168 8 chr15 20023940 20024121 -65671633 - L1M3 LINE L1 -730 5441 5290 2140 114 3 3 chr15 20024121 20024418 -65671336 - AluY SINE Alu -12 299 3 1094 204 168 8 chr15 20024418 20024617 -65671137 - L1M3 LINE L1 -881 5290 4999 2184 129 111 3 chr15 20024617 20025003 -65670751 + MSTA LTR MaLR 1 428 0 839 283 105 71 chr15 20026588 20027140 -65668614 - MLT1K LTR MaLR -16 572 2 271 242 11 84 chr15 20027833 20027928 -65667826 - MIR3 SINE MIR -34 174 87 1552 140 0 5 chr15 20028133 20028355 -65667399 - AluSg/x SINE Alu -20 290 70 760 172 8 15 chr15 20028681 20028815 -65666939 + FLAM_A SINE Alu 1 133 0 237 319 28 0 chr15 20028864 20028936 -65666818 - Charlie8 DNA MER1_type 0 2417 2344 458 263 119 27 chr15 20029213 20029506 -65666248 - L1MC5 LINE L1 -102 7859 7540 1688 146 86 4 chr15 20029793 20030061 -65665693 - AluJo SINE Alu -22 290 1 331 215 89 0 chr15 20030248 20030327 -65665427 - L1ME3A LINE L1 -321 5849 5764 1374 166 5 9 chr15 20030800 20031054 -65664700 - AluJo SINE Alu 0 313 61 1995 128 0 7 chr15 20031061 20031349 -65664405 + AluSq SINE Alu 13 298 -15 2084 95 3 57 chr15 20032428 20032743 -65663011 + AluSg SINE Alu 1 298 -12 578 229 115 13 chr15 20033055 20033212 -65662542 + MER5B DNA MER1_type 1 173 -5 388 311 115 75 chr15 20033498 20033871 -65661883 - L2 LINE L2 -6 3266 2879 208 289 157 12 chr15 20035056 20035139 -65660615 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 20035259 20035364 -65660390 + MIR SINE MIR 33 146 -62 389 238 0 12 chr15 20035922 20036006 -65659748 - L2 LINE L2 -1 3312 3230 1279 174 30 30 chr15 20036209 20036514 -65659240 + AluSq SINE Alu 1 305 -8 222 224 0 0 chr15 20037429 20037478 -65658276 + L3 LINE CR1 1527 1575 -2 217 156 0 89 chr15 20037656 20037701 -65658053 + L2 LINE L2 3251 3291 -22 1803 166 3 10 chr15 20038393 20038695 -65657059 + AluJb SINE Alu 1 300 -12 2120 98 0 0 chr15 20038705 20038982 -65656772 + AluY SINE Alu 2 278 -33 324 0 0 0 chr15 20038982 20039018 -65656736 + (CA)n Simple_repeat Simple_repeat 1 36 0 2401 68 0 0 chr15 20039020 20039316 -65656438 + AluY SINE Alu 1 296 -15 390 259 46 96 chr15 20039580 20039777 -65655977 - L3b LINE CR1 -87 1496 1310 1473 156 28 16 chr15 20040107 20040357 -65655397 - AluSp SINE Alu -12 301 49 219 224 86 0 chr15 20040508 20040566 -65655188 + L2 LINE L2 3249 3311 -2 1874 129 64 0 chr15 20040600 20040880 -65654874 + AluSx SINE Alu 1 298 -14 2496 104 6 3 chr15 20041052 20041399 -65654355 + L1MB3 LINE L1 5835 6182 -1 22 70 0 0 chr15 20041592 20041635 -65654119 + AT_rich Low_complexity Low_complexity 1 43 0 2066 219 45 54 chr15 20041655 20042280 -65653474 + L1MC4 LINE L1 7183 7801 -241 1402 102 30 5 chr15 20042714 20042911 -65652843 + L1PA15 LINE L1 5957 6158 -7 180 273 0 0 chr15 20043452 20043496 -65652258 - MIR SINE MIR -4 258 215 * 1326 246 17 0 chr15 20043490 20043783 -65651971 + L2 LINE L2 2160 2457 -857 448 184 98 43 chr15 20043901 20044022 -65651732 - L1MC5 LINE L1 -133 7828 7694 2207 126 0 3 chr15 20044022 20044331 -65651423 + AluSx SINE Alu 1 308 -4 448 184 98 43 chr15 20044331 20044372 -65651382 - L1MC5 LINE L1 -267 7694 7657 754 176 78 14 chr15 20044379 20044521 -65651233 + AluJb SINE Alu 137 287 -25 2925 190 57 39 chr15 20044633 20044688 -65651066 - L1ME2 LINE L1 -1 6163 6110 1751 148 7 52 chr15 20044688 20044998 -65650756 - AluJo SINE Alu -16 296 1 2925 190 57 39 chr15 20044998 20045530 -65650224 - L1ME2 LINE L1 -54 6110 5560 1785 156 3 23 chr15 20045530 20045838 -65649916 + AluJo SINE Alu 9 310 -2 2925 190 57 39 chr15 20045838 20045919 -65649835 - L1ME2 LINE L1 -604 5560 5482 2088 105 20 16 chr15 20045937 20046242 -65649512 - AluY SINE Alu -5 306 1 1934 150 10 0 chr15 20046243 20046536 -65649218 - AluSx SINE Alu -16 296 1 791 205 24 101 chr15 20046545 20046833 -65648921 - L1ME2 LINE L1 0 6164 5899 1851 143 11 0 chr15 20046859 20047169 -65648585 + AluSx SINE Alu 1 313 0 1042 167 0 0 chr15 20047169 20047325 -65648429 + AluJb SINE Alu 137 292 -20 594 225 133 67 chr15 20047423 20047663 -65648091 + Charlie8 DNA MER1_type 9 264 -2153 270 234 13 52 chr15 20047733 20047810 -65647944 + Charlie8 DNA MER1_type 2343 2416 -1 201 317 0 0 chr15 20047996 20048037 -65647717 - L2 LINE L2 -98 3174 3134 304 230 0 27 chr15 20048339 20048413 -65647341 - AluSc SINE Alu -10 289 218 316 217 33 11 chr15 20048545 20048637 -65647117 + LTR16B LTR ERVL 271 364 -100 1155 168 51 5 chr15 20048663 20048877 -65646877 - MER2 DNA MER2_type -1 344 121 754 147 7 63 chr15 20048877 20049020 -65646734 + AluJo SINE Alu 2 136 -176 866 199 6 32 chr15 20049029 20049185 -65646569 - FRAM SINE Alu -24 152 1 674 258 46 16 chr15 20049215 20049409 -65646345 - MIR SINE MIR -36 226 27 2206 108 3 16 chr15 20049611 20049926 -65645828 + AluSx SINE Alu 1 311 -1 1543 139 111 84 chr15 20051668 20052009 -65643745 + MER51A LTR ERV1 1 569 -65 2385 94 0 0 chr15 20052009 20052308 -65643446 - AluSx SINE Alu -13 299 1 1543 139 111 84 chr15 20052308 20052376 -65643378 + MER51A LTR ERV1 569 634 0 26 64 0 0 chr15 20052452 20052499 -65643255 + AT_rich Low_complexity Low_complexity 1 47 0 1674 166 40 3 chr15 20052584 20052885 -65642869 - AluJb SINE Alu 0 312 1 1992 131 3 39 chr15 20052950 20053256 -65642498 + AluSg SINE Alu 1 295 -15 405 170 64 0 chr15 20053349 20053443 -65642311 - HAL1 LINE L1 -90 2417 2318 1691 170 17 30 chr15 20053443 20053743 -65642011 - AluJo SINE Alu -16 296 1 3131 205 147 27 chr15 20053765 20054359 -65641395 - HAL1 LINE L1 -307 2200 1678 858 154 0 22 chr15 20054359 20054522 -65641232 + FLAM_C SINE Alu 1 133 0 3131 205 147 27 chr15 20054522 20054888 -65640866 - HAL1 LINE L1 -829 1678 1125 831 193 58 40 chr15 20054901 20055124 -65640630 - L1MB8 LINE L1 -6 6172 5946 208 289 157 12 chr15 20056589 20056672 -65639082 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 20056792 20056897 -65638857 + MIR SINE MIR 33 146 -62 422 226 0 12 chr15 20057455 20057539 -65638215 - L2 LINE L2 -1 3312 3230 2455 85 0 3 chr15 20057742 20058049 -65637705 + AluY SINE Alu 1 306 -5 1016 208 30 10 chr15 20058409 20058606 -65637148 + MER58A DNA MER1_type 24 224 0 21 0 0 0 chr15 20058681 20058702 -65637052 + AT_rich Low_complexity Low_complexity 1 21 0 1736 161 0 11 chr15 20060190 20060470 -65635284 + AluJb SINE Alu 12 288 -24 575 254 96 32 chr15 20062004 20062224 -65633530 - L3b LINE CR1 -136 1447 1214 216 301 105 35 chr15 20062854 20062997 -65632757 - L3 LINE CR1 -437 1140 988 234 235 49 62 chr15 20064820 20064901 -65630853 + MIR SINE MIR 104 183 -79 471 262 157 26 chr15 20066178 20066369 -65629385 + MIR SINE MIR 41 256 -6 182 270 90 60 chr15 20066493 20066593 -65629161 + L2 LINE L2 3150 3252 -20 2046 122 7 7 chr15 20066696 20066991 -65628763 - AluSx SINE Alu -17 295 1 1302 101 0 6 chr15 20067183 20067361 -65628393 - AluSq SINE Alu -5 308 132 278 167 128 90 chr15 20069018 20069096 -65626658 + MIR SINE MIR 30 109 -99 2189 133 0 0 chr15 20069881 20070189 -65625565 + AluSx SINE Alu 1 308 -4 2040 133 0 25 chr15 20070199 20070516 -65625238 + AluSx SINE Alu 1 309 -3 2684 134 40 113 chr15 20070867 20070929 -65624825 + L1MD3 LINE L1 7388 7453 -542 1868 137 7 14 chr15 20070929 20071213 -65624541 + AluSx SINE Alu 9 290 -22 2684 134 40 113 chr15 20071213 20071352 -65624402 + L1MD3 LINE L1 7453 7601 -394 1549 146 16 84 chr15 20071352 20071660 -65624094 - AluJo SINE Alu -21 291 5 2684 134 40 113 chr15 20071660 20072113 -65623641 + L1MD3 LINE L1 7601 7995 0 393 214 77 17 chr15 20074212 20074329 -65621425 + L1ME2 LINE L1 6007 6130 -34 1732 188 3 3 chr15 20074695 20074998 -65620756 + AluJb SINE Alu 1 303 -9 602 291 20 31 chr15 20075062 20075258 -65620496 + MER117 DNA MER1_type 1 194 -3 1998 131 7 7 chr15 20075359 20075656 -65620098 + AluSx SINE Alu 1 297 -15 281 328 70 35 chr15 20075736 20076020 -65619734 + L2 LINE L2 1979 2272 -1042 453 289 74 65 chr15 20076057 20076424 -65619330 + L2 LINE L2 322 691 -2623 580 204 61 8 chr15 20076438 20076570 -65619184 + MIR SINE MIR 123 261 -1 553 165 43 35 chr15 20076645 20076760 -65618994 + MER103 DNA DNA 7 122 -44 2337 148 39 58 chr15 20076775 20077209 -65618545 + MSTC LTR MaLR 1 426 -2 1859 154 10 0 chr15 20077330 20077622 -65618132 + AluJb SINE Alu 7 301 -11 2194 50 0 0 chr15 20077807 20078068 -65617686 + AluY SINE Alu 41 301 -10 2219 117 13 0 chr15 20078145 20078453 -65617301 + AluSx SINE Alu 1 312 0 2078 103 10 32 chr15 20078715 20079025 -65616729 + AluSg SINE Alu 2 304 -6 200 311 122 28 chr15 20079377 20079557 -65616197 - MIR SINE MIR -46 216 20 1731 196 0 3 chr15 20079657 20079969 -65615785 + AluJb SINE Alu 1 311 -1 196 302 0 0 chr15 20080884 20080937 -65614817 - L2 LINE L2 -7 3306 3254 228 143 0 0 chr15 20082389 20082431 -65613323 - L1MB4 LINE L1 -1 6179 6138 2628 204 67 19 chr15 20082625 20083279 -65612475 - Tigger7 DNA MER2_type -8 2579 1 859 164 0 0 chr15 20083400 20083528 -65612226 - FLAM_C SINE Alu -5 128 1 237 159 0 0 chr15 20084702 20084746 -65611008 + (TG)n Simple_repeat Simple_repeat 2 45 0 488 242 91 50 chr15 20085611 20085809 -65609945 + L3 LINE CR1 974 1179 -398 1739 154 148 22 chr15 20086462 20086786 -65608968 + MLT1A1 LTR MaLR 1 365 0 2119 115 0 22 chr15 20086962 20087276 -65608478 + AluSx SINE Alu 1 307 -5 1790 149 3 23 chr15 20087678 20087980 -65607774 - AluSx SINE Alu -16 296 1 1640 152 72 0 chr15 20087980 20088256 -65607498 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 20088447 20088467 -65607287 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1596 180 7 27 chr15 20088471 20088765 -65606989 - AluJb SINE Alu -24 288 1 1493 197 34 24 chr15 20088864 20089159 -65606595 + AluJo SINE Alu 1 298 -14 1488 175 67 4 chr15 20089339 20089608 -65606146 + AluJo SINE Alu 5 290 -22 1200 169 69 159 chr15 20089798 20090231 -65605523 - MSTD LTR MaLR -2 394 1 1772 185 62 67 chr15 20090588 20091155 -65604599 + L1MC5 LINE L1 7348 7911 -50 1899 148 10 3 chr15 20091241 20091538 -65604216 + AluJb SINE Alu 2 300 -12 444 264 96 1 chr15 20092117 20092265 -65603489 + Charlie8 DNA MER1_type 115 248 -1180 2105 51 0 16 chr15 20092265 20092521 -65603233 + AluY SINE Alu 52 303 -8 444 264 96 1 chr15 20092521 20092554 -65603200 + Charlie8 DNA MER1_type 248 1411 -17 1961 166 0 3 chr15 20092594 20092902 -65602852 + AluJb SINE Alu 5 311 -1 1463 143 16 12 chr15 20093730 20093982 -65601772 - AluSx SINE Alu -5 307 55 352 141 0 16 chr15 20093992 20094066 -65601688 - Alu SINE Alu -1 301 244 2415 72 0 3 chr15 20094067 20094371 -65601383 - AluY SINE Alu -8 303 1 487 193 53 0 chr15 20094610 20094724 -65601030 - AluY SINE Alu -189 122 3 1998 158 0 7 chr15 20094842 20095140 -65600614 - AluSx SINE Alu -16 296 1 2496 91 0 0 chr15 20095157 20095466 -65600288 - AluSx SINE Alu -3 309 1 32 81 0 0 chr15 20095573 20095647 -65600107 + AT_rich Low_complexity Low_complexity 1 74 0 1896 156 3 13 chr15 20095750 20096065 -65599689 + AluJb SINE Alu 1 312 0 329 284 96 50 chr15 20096527 20096809 -65598945 + L2 LINE L2 1812 2106 -1208 361 350 55 27 chr15 20096842 20097025 -65598729 + MIR SINE MIR 20 207 -55 217 302 48 0 chr15 20097252 20097315 -65598439 + L2 LINE L2 2692 2757 -557 210 208 0 21 chr15 20098489 20098537 -65597217 + CT-rich Low_complexity Low_complexity 2 48 0 258 105 0 0 chr15 20098835 20098873 -65596881 + (A)n Simple_repeat Simple_repeat 1 38 0 203 206 0 48 chr15 20099429 20099492 -65596262 + CT-rich Low_complexity Low_complexity 2 61 0 989 179 0 0 chr15 20099560 20099716 -65596038 - AluSg/x SINE Alu -23 287 132 5710 32 3 0 chr15 20099860 20100489 -65595265 - L1PA3 LINE L1 0 6155 5525 1122 214 71 4 chr15 20100525 20100805 -65594949 + AluSq SINE Alu 1 299 -4 1234 143 0 5 chr15 20101519 20101735 -65594019 + AluY SINE Alu 92 306 -5 379 222 37 0 chr15 20101920 20102009 -65593745 + MIR SINE MIR 19 109 -126 491 149 0 0 chr15 20102099 20102166 -65593588 - AluS SINE Alu -17 294 228 1528 97 0 0 chr15 20102166 20102361 -65593393 - AluSq SINE Alu -118 195 1 251 308 0 13 chr15 20102365 20102443 -65593311 + MER94 DNA DNA 32 108 -26 659 133 10 0 chr15 20102443 20102541 -65593213 + AluSc SINE Alu 2 100 -209 1507 172 7 26 chr15 20103171 20103479 -65592275 - AluY SINE Alu -9 302 1 1809 160 26 16 chr15 20103802 20104108 -65591646 - AluJb SINE Alu -3 309 1 2200 130 0 0 chr15 20104239 20104539 -65591215 - AluSx SINE Alu -12 300 1 5500 44 3 2 chr15 20104576 20105206 -65590548 + L1PA3 LINE L1 5525 6155 0 900 205 0 0 chr15 20105349 20105505 -65590249 + AluSg/x SINE Alu 132 287 -23 2643 46 0 0 chr15 20105892 20106198 -65589556 + AluY SINE Alu 1 306 -5 379 161 32 0 chr15 20106383 20106445 -65589309 + MIR SINE MIR 19 82 -126 1672 118 122 11 chr15 20106561 20106824 -65588930 - AluSg1 SINE Alu -17 292 1 285 244 0 122 chr15 20106828 20106905 -65588849 + MER94 DNA DNA 32 92 -42 2142 93 3 14 chr15 20106905 20107195 -65588559 + AluSc SINE Alu 1 287 -22 285 244 0 122 chr15 20107195 20107232 -65588522 + MER94 DNA DNA 92 132 -2 2242 106 3 0 chr15 20107351 20107644 -65588110 - AluSp SINE Alu -19 294 1 1986 135 10 3 chr15 20107714 20108011 -65587743 - AluSx SINE Alu -13 299 1 2058 122 10 10 chr15 20108420 20108715 -65587039 + AluSx SINE Alu 1 295 -17 24 100 0 0 chr15 20110274 20110354 -65585400 + AT_rich Low_complexity Low_complexity 1 80 0 1715 82 0 9 chr15 20110463 20110683 -65585071 + AluSg/x SINE Alu 93 310 0 1998 150 0 0 chr15 20110718 20111033 -65584721 + AluSx SINE Alu 1 315 0 1133 204 4 113 chr15 20111042 20111131 -65584623 + L1ME1 LINE L1 5390 5487 -679 2172 104 3 23 chr15 20111131 20111430 -65584324 + AluSx SINE Alu 1 293 -19 1133 204 4 113 chr15 20111430 20111478 -65584276 + L1ME1 LINE L1 5487 5539 -627 1809 159 3 19 chr15 20111478 20111786 -65583968 + AluJo SINE Alu 1 303 -9 1133 204 4 113 chr15 20111786 20112025 -65583729 + L1ME1 LINE L1 5539 5716 -450 2003 141 3 0 chr15 20112037 20112327 -65583427 + AluSx SINE Alu 1 291 -21 744 207 56 19 chr15 20112426 20112639 -65583115 + L1ME1 LINE L1 5707 5927 -239 1239 179 5 14 chr15 20112639 20112862 -65582892 - AluJo SINE Alu -5 307 87 931 221 21 55 chr15 20112872 20113107 -65582647 + L1ME1 LINE L1 5933 6159 -7 1664 184 7 0 chr15 20113234 20113538 -65582216 - AluJo SINE Alu 0 308 3 481 252 91 69 chr15 20113689 20113722 -65582032 + L1ME4a LINE L1 5521 5552 -569 1505 170 85 18 chr15 20113722 20114005 -65581749 + AluJb SINE Alu 1 302 -10 481 252 91 69 chr15 20114005 20114200 -65581554 + L1ME4a LINE L1 5552 5760 -361 1899 150 17 10 chr15 20114200 20114500 -65581254 - AluJb SINE Alu -10 302 1 481 252 91 69 chr15 20114500 20114588 -65581166 + L1ME4a LINE L1 5760 5845 -276 2165 109 7 3 chr15 20114656 20114950 -65580804 - AluSx SINE Alu -17 295 1 962 202 103 24 chr15 20115832 20116084 -65579670 + AluJb SINE Alu 31 302 -10 439 268 84 53 chr15 20116084 20116279 -65579475 + L1ME4a LINE L1 5553 5761 -360 1961 147 17 7 chr15 20116279 20116578 -65579176 - AluJb SINE Alu -10 302 1 439 268 84 53 chr15 20116578 20116666 -65579088 + L1ME4a LINE L1 5761 5845 -276 1525 137 0 4 chr15 20116734 20116960 -65578794 - AluSg/x SINE Alu -17 295 71 235 53 0 0 chr15 20117954 20117992 -65577762 + Alu SINE Alu 265 302 0 1499 176 3 52 chr15 20118054 20118361 -65577393 - AluJo SINE Alu -10 302 11 506 135 63 79 chr15 20118475 20118530 -65577224 - L1MB5 LINE L1 0 6174 6120 2246 129 0 0 chr15 20118530 20118839 -65576915 + AluSx SINE Alu 1 309 -3 506 135 63 79 chr15 20118839 20118909 -65576845 - L1MB5 LINE L1 -54 6120 6051 618 218 156 31 chr15 20119271 20119496 -65576258 + HAL1 LINE L1 11 263 -2244 1946 232 76 34 chr15 20119532 20120179 -65575575 + HAL1 LINE L1 455 1128 -1379 1079 150 26 75 chr15 20120184 20120377 -65575377 + L1MB7 LINE L1 5626 5746 -432 2181 98 3 17 chr15 20120377 20120695 -65575059 + AluSp SINE Alu 1 314 0 1079 150 26 75 chr15 20120695 20120914 -65574840 + L1MB7 LINE L1 5746 5974 -204 1197 136 86 47 chr15 20120920 20121177 -65574577 + L1MB7 LINE L1 5915 6181 -3 1495 197 199 130 chr15 20121180 20121546 -65574208 + HAL1 LINE L1 1125 1464 -1043 217 0 61 0 chr15 20121555 20121588 -65574166 + (TTG)n Simple_repeat Simple_repeat 2 36 0 834 167 0 0 chr15 20121588 20121710 -65574044 - FLAM_C SINE Alu -187 125 1 1495 197 199 130 chr15 20121710 20122326 -65573428 + HAL1 LINE L1 1464 2331 -176 1691 170 17 30 chr15 20122326 20122626 -65573128 + AluJo SINE Alu 1 296 -16 1495 197 199 130 chr15 20122626 20122720 -65573034 + HAL1 LINE L1 2331 2417 -90 1840 141 10 39 chr15 20122813 20123119 -65572635 - AluJb SINE Alu -15 297 1 2103 125 7 3 chr15 20123544 20123840 -65571914 - AluSx SINE Alu -15 297 1 730 219 0 0 chr15 20123851 20123979 -65571775 - FLAM_C SINE Alu -4 129 2 1861 170 0 16 chr15 20124018 20124330 -65571424 + AluJb SINE Alu 1 307 -5 691 232 101 29 chr15 20124417 20124624 -65571130 - MIR SINE MIR -27 235 14 29 28 0 0 chr15 20124946 20124982 -65570772 + AT_rich Low_complexity Low_complexity 1 36 0 333 73 0 0 chr15 20125220 20125261 -65570493 + MER4B LTR ERV1 499 539 -71 21 0 0 0 chr15 20125261 20125282 -65570472 + AT_rich Low_complexity Low_complexity 1 21 0 602 201 21 28 chr15 20125431 20125575 -65570179 + L1MB7 LINE L1 6042 6184 0 333 239 82 37 chr15 20127052 20127186 -65568568 + L1ME4a LINE L1 5981 6120 -1 2209 112 0 3 chr15 20127188 20127483 -65568271 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 20127491 20127522 -65568232 + AT_rich Low_complexity Low_complexity 1 31 0 909 231 93 4 chr15 20127848 20128073 -65567681 + MIR SINE MIR 5 249 -13 5661 109 102 117 chr15 20128609 20130201 -65565553 - pTR5 LTR ERV1 0 2438 741 224 219 0 0 chr15 20130211 20130252 -65565502 + A-rich Low_complexity Low_complexity 3 43 0 184 228 70 35 chr15 20131161 20131218 -65564536 + L2 LINE L2 916 974 -2340 2307 114 0 0 chr15 20131742 20132049 -65563705 + AluSx SINE Alu 5 311 -1 2438 88 0 0 chr15 20132774 20133082 -65562672 + AluY SINE Alu 1 308 -3 930 139 0 0 chr15 20134684 20134813 -65560941 + FLAM_C SINE Alu 1 129 -14 286 181 278 0 chr15 20134874 20134946 -65560808 + FLAM_A SINE Alu 23 114 -19 213 39 0 0 chr15 20134946 20134972 -65560782 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2161 119 3 10 chr15 20135922 20136232 -65559522 + AluSx SINE Alu 1 308 -4 241 278 0 0 chr15 20136688 20136742 -65559012 + CT-rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr15 20137216 20137248 -65558506 + (CA)n Simple_repeat Simple_repeat 2 33 0 604 141 0 109 chr15 20137248 20137290 -65558464 - AluJo/FRAM SINE Alu -3 309 264 2457 75 0 0 chr15 20137290 20137585 -65558169 + AluSc SINE Alu 1 295 -14 604 141 0 109 chr15 20137585 20137670 -65558084 - AluJo/FRAM SINE Alu -48 264 196 2353 59 0 7 chr15 20137701 20138017 -65557737 + AluY SINE Alu 1 314 0 1886 142 14 17 chr15 20138109 20138242 -65557512 + AluSx SINE Alu 1 133 -179 2293 88 0 0 chr15 20138242 20138536 -65557218 + AluY SINE Alu 1 294 -17 1886 142 14 17 chr15 20138536 20138698 -65557056 + AluSx SINE Alu 133 295 -17 433 248 59 98 chr15 20138705 20138959 -65556795 + L1MC4 LINE L1 7634 7877 -165 351 0 0 0 chr15 20138989 20139028 -65556726 + (CA)n Simple_repeat Simple_repeat 2 40 0 301 232 49 37 chr15 20139204 20139286 -65556468 + L1ME4a LINE L1 5966 6048 -73 2605 239 78 63 chr15 20139573 20139913 -65555841 + L2 LINE L2 2065 2399 -914 261 200 0 100 chr15 20139913 20139973 -65555781 + FLAM_A SINE Alu 1 40 -93 2605 239 78 63 chr15 20139973 20140503 -65555251 + L2 LINE L2 2399 3020 -293 1715 151 4 0 chr15 20140503 20140761 -65554993 - AluJb SINE Alu -11 301 43 2605 239 78 63 chr15 20140761 20141040 -65554714 + L2 LINE L2 3020 3293 -20 2507 64 0 0 chr15 20141049 20141347 -65554407 + AluY SINE Alu 1 298 -13 1950 113 0 28 chr15 20141347 20141629 -65554125 + AluSx SINE Alu 33 307 -5 2205 98 10 0 chr15 20141849 20142156 -65553598 + AluSp SINE Alu 1 310 -3 201 317 0 0 chr15 20142650 20142691 -65553063 - L2 LINE L2 -98 3174 3134 234 329 0 0 chr15 20142893 20142963 -65552791 - L2 LINE L2 -296 2976 2907 2200 119 0 0 chr15 20142996 20143289 -65552465 - AluSq SINE Alu -20 293 1 4637 158 45 39 chr15 20143290 20143590 -65552164 - L1MD2 LINE L1 -163 6196 5899 1739 176 7 0 chr15 20143590 20143880 -65551874 - AluJo SINE Alu -16 296 5 4637 158 45 39 chr15 20143880 20144092 -65551662 - L1MD2 LINE L1 -460 5899 5690 2139 121 30 0 chr15 20144092 20144390 -65551364 - AluSx SINE Alu -5 307 1 4637 158 45 39 chr15 20144390 20144916 -65550838 - L1MD2 LINE L1 -669 5690 5147 409 143 0 0 chr15 20144976 20145032 -65550722 + AluS SINE Alu 2 57 -261 228 194 15 30 chr15 20146486 20146553 -65549201 + CT-rich Low_complexity Low_complexity 1 66 0 989 179 0 0 chr15 20146618 20146774 -65548980 - AluSg/x SINE Alu -23 289 134 5706 32 3 0 chr15 20146918 20147547 -65548207 - L1PA3 LINE L1 0 6155 5525 2090 131 0 3 chr15 20147585 20147875 -65547879 + AluSx SINE Alu 1 289 -23 494 230 0 0 chr15 20147885 20147972 -65547782 + FRAM SINE Alu 17 103 -73 281 26 26 0 chr15 20148061 20148099 -65547655 + (TC)n Simple_repeat Simple_repeat 2 40 0 1536 171 4 25 chr15 20148111 20148386 -65547368 - AluJo SINE Alu -39 273 5 1938 125 20 27 chr15 20148486 20148651 -65547103 - AluSx SINE Alu -17 295 131 2274 96 0 0 chr15 20148651 20148944 -65546810 - AluSc SINE Alu -16 293 1 1938 125 20 27 chr15 20148944 20149075 -65546679 - AluSx SINE Alu -181 131 1 184 370 0 0 chr15 20151333 20151387 -65544367 - L2 LINE L2 -76 3196 3143 442 343 47 45 chr15 20151700 20152193 -65543561 + L1MEd LINE L1 843 1336 -5036 245 281 52 0 chr15 20152250 20152346 -65543408 + L1MEd LINE L1 1292 1392 -4992 240 250 0 0 chr15 20152390 20152446 -65543308 + GA-rich Low_complexity Low_complexity 1 56 0 1823 134 30 24 chr15 20152755 20153053 -65542701 - AluSx SINE Alu -11 301 2 1032 243 40 58 chr15 20153054 20153314 -65542440 - L1M4 LINE L1 -3063 3083 2831 2108 106 55 0 chr15 20153314 20153607 -65542147 - AluSx SINE Alu -1 311 3 1032 243 40 58 chr15 20153607 20153725 -65542029 - L1M4 LINE L1 -3315 2831 2712 21 82 0 0 chr15 20154292 20154341 -65541413 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr15 20154592 20154635 -65541119 + AT_rich Low_complexity Low_complexity 1 43 0 1360 269 60 49 chr15 20154915 20155489 -65540265 + MLT1G LTR MaLR 10 549 0 3238 180 49 19 chr15 20155724 20156731 -65539023 + MER61-int LTR ERV1 1409 4471 -2525 1878 152 29 37 chr15 20156732 20157080 -65538674 + THE1B LTR MaLR 1 345 -19 879 207 17 0 chr15 20157098 20157272 -65538482 + MER61-int LTR ERV1 1720 1896 -3321 2394 63 0 0 chr15 20157526 20157812 -65537942 + AluY SINE Alu 14 299 -12 189 0 0 0 chr15 20157838 20157859 -65537895 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 249 277 84 42 chr15 20158347 20158513 -65537241 + L1MC5 LINE L1 7692 7864 -97 619 134 0 0 chr15 20158806 20158888 -65536866 - AluS SINE Alu -229 83 2 458 131 60 0 chr15 20160784 20160868 -65534886 - AluJ/FLAM SINE Alu -222 90 2 32 81 0 0 chr15 20160972 20161046 -65534708 + AT_rich Low_complexity Low_complexity 1 74 0 2496 91 0 0 chr15 20161153 20161462 -65534292 + AluSx SINE Alu 1 309 -3 2176 119 0 7 chr15 20161479 20161773 -65533981 + AluSx SINE Alu 1 292 -20 1289 208 112 11 chr15 20161779 20162039 -65533715 + AluJo SINE Alu 1 286 -16 2222 117 0 0 chr15 20162814 20163112 -65532642 - AluSx SINE Alu -14 298 1 188 0 74 0 chr15 20163257 20163284 -65532470 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 411 333 11 32 chr15 20163585 20163771 -65531983 - L3b LINE CR1 -137 1446 1265 2308 82 13 7 chr15 20166451 20166754 -65529000 + AluSp SINE Alu 1 305 -8 2147 115 24 0 chr15 20168338 20168633 -65527121 + AluSx SINE Alu 1 302 -10 337 293 51 32 chr15 20169027 20169184 -65526570 - MIR SINE MIR -56 206 47 354 266 18 9 chr15 20176115 20176228 -65519526 + GA-rich Low_complexity Low_complexity 1 114 0 2408 80 0 10 chr15 20189240 20189539 -65506215 + AluSx SINE Alu 1 296 -16 1157 149 0 11 chr15 20189539 20189720 -65506034 + AluSg/x SINE Alu 132 310 0 522 221 92 131 chr15 20189729 20189956 -65505798 - L1MC5 LINE L1 -252 7709 7475 1650 179 14 3 chr15 20189956 20190241 -65505513 - AluJb SINE Alu -24 288 1 522 221 92 131 chr15 20190241 20190263 -65505491 - L1MC5 LINE L1 -486 7475 7454 2261 116 3 22 chr15 20190263 20190581 -65505173 + AluSq SINE Alu 1 312 -1 522 221 92 131 chr15 20190581 20191069 -65504685 - L1MC5 LINE L1 -507 7454 7000 1823 158 4 7 chr15 20191142 20191420 -65504334 - AluJb SINE Alu -34 278 2 450 0 0 0 chr15 20191476 20191526 -65504228 + (TG)n Simple_repeat Simple_repeat 2 51 0 1360 199 17 0 chr15 20191526 20191767 -65503987 - AluJo SINE Alu -26 286 42 333 244 125 3 chr15 20191778 20191934 -65503820 - L1MC4 LINE L1 -869 6939 6758 581 193 90 14 chr15 20191946 20192091 -65503663 + MER106A DNA MER1_type 44 199 -37 1186 86 0 0 chr15 20192092 20192283 -65503471 + L1PA4 LINE L1 5991 6155 0 2568 248 105 49 chr15 20192325 20193341 -65502413 - L1MC4a LINE L1 -1036 6772 5815 1628 167 6 62 chr15 20193341 20193665 -65502089 + AluJo SINE Alu 1 306 -6 2568 248 105 49 chr15 20193665 20193725 -65502029 - L1MC4a LINE L1 -1993 5815 5760 2409 81 3 0 chr15 20193725 20194023 -65501731 + AluY SINE Alu 1 299 -12 2568 248 105 49 chr15 20194023 20194297 -65501457 - L1MC4a LINE L1 -2048 5760 5345 675 223 24 24 chr15 20194303 20194469 -65501285 - FRAM SINE Alu 0 166 1 4473 183 129 164 chr15 20194599 20194767 -65500987 - L1MB4 LINE L1 0 6180 6008 544 29 0 0 chr15 20194767 20194836 -65500918 + MER41B LTR ERV1 481 549 -86 4473 183 129 164 chr15 20194836 20195119 -65500635 - L1MB4 LINE L1 -172 6008 5717 1718 174 37 17 chr15 20195119 20195418 -65500336 - AluJo SINE Alu -7 305 1 4473 183 129 164 chr15 20195418 20195482 -65500272 - L1MB4 LINE L1 -463 5717 5652 2013 145 20 7 chr15 20195482 20195786 -65499968 - AluJb SINE Alu -4 308 1 4473 183 129 164 chr15 20195786 20196841 -65498913 - L1MB4 LINE L1 -528 5652 4561 343 120 0 0 chr15 20196841 20196891 -65498863 - AluJb SINE Alu -7 295 246 960 153 5 100 chr15 20196893 20196932 -65498822 - AluJb SINE Alu -139 173 132 2092 109 0 34 chr15 20196932 20197225 -65498529 - AluSg SINE Alu -19 291 9 960 153 5 100 chr15 20197225 20197375 -65498379 - AluJb SINE Alu -180 132 2 1736 154 9 72 chr15 20197376 20197573 -65498181 - AluJo SINE Alu -13 299 91 2330 97 3 7 chr15 20197573 20197883 -65497871 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 20197883 20197918 -65497836 + (TA)n Simple_repeat Simple_repeat 2 36 0 1736 154 9 72 chr15 20197918 20198038 -65497716 - AluJo SINE Alu -219 93 1 4473 183 129 164 chr15 20198038 20198209 -65497545 - L1MB4 LINE L1 -1620 4560 4384 1712 167 39 0 chr15 20198209 20198490 -65497264 + AluJb SINE Alu 1 292 -20 4473 183 129 164 chr15 20198490 20198529 -65497225 - L1MB4 LINE L1 -1796 4384 4345 1906 166 0 0 chr15 20198529 20198807 -65496947 + AluJb SINE Alu 14 291 -21 790 180 0 0 chr15 20198811 20198933 -65496821 - FLAM_C SINE Alu -11 122 1 4473 183 129 164 chr15 20198933 20198956 -65496798 - L1MB4 LINE L1 -1838 4342 4320 1730 177 44 0 chr15 20198956 20199129 -65496625 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 20199129 20199153 -65496601 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1730 177 44 0 chr15 20199153 20199273 -65496481 - AluJb SINE Alu -198 114 1 4473 183 129 164 chr15 20199273 20200063 -65495691 - L1MB4 LINE L1 -1860 4320 3504 2237 115 3 3 chr15 20200063 20200359 -65495395 + AluSx SINE Alu 1 296 -16 4473 183 129 164 chr15 20200359 20200434 -65495320 - L1MB4 LINE L1 -2676 3504 3428 2702 24 0 3 chr15 20200434 20200730 -65495024 - AluYa5 SINE Alu -16 295 1 4473 183 129 164 chr15 20200730 20200805 -65494949 - L1MB4 LINE L1 -2752 3428 3352 1451 213 72 4 chr15 20200805 20201082 -65494672 - AluJb SINE Alu -16 296 1 4473 183 129 164 chr15 20201082 20201251 -65494503 - L1MB4 LINE L1 -2828 3352 3179 1474 114 111 97 chr15 20201251 20201549 -65494205 + AluJb SINE Alu 1 302 -10 4473 183 129 164 chr15 20201549 20201591 -65494163 - L1MB4 LINE L1 -3001 3179 3137 2156 122 24 0 chr15 20201591 20201887 -65493867 + AluSx SINE Alu 3 305 -7 4473 183 129 164 chr15 20201887 20202158 -65493596 - L1MB4 LINE L1 -3043 3137 2858 1639 182 0 40 chr15 20202158 20202454 -65493300 - AluJo SINE Alu -2 310 27 2480 81 0 3 chr15 20202464 20202773 -65492981 - AluY SINE Alu -3 308 1 4473 183 129 164 chr15 20202773 20202825 -65492929 - L1MB4 LINE L1 -3331 2849 2797 802 211 56 0 chr15 20202825 20202986 -65492768 + FRAM SINE Alu 1 166 -10 4473 183 129 164 chr15 20202986 20203154 -65492600 - L1MB4 LINE L1 -3383 2797 2625 625 205 34 0 chr15 20203154 20203271 -65492483 - FLAM_A SINE Alu -8 125 5 4473 183 129 164 chr15 20203271 20203426 -65492328 - L1MB4 LINE L1 -3555 2625 2234 354 107 0 0 chr15 20203446 20203502 -65492252 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 20203607 20203647 -65492107 + AT_rich Low_complexity Low_complexity 1 40 0 2048 140 0 3 chr15 20203670 20203963 -65491791 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 20203980 20204001 -65491753 + AT_rich Low_complexity Low_complexity 1 21 0 1865 171 0 31 chr15 20204092 20204414 -65491340 - AluJb SINE Alu 0 312 1 1971 145 6 25 chr15 20204417 20204734 -65491020 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 20204734 20204783 -65490971 + AT_rich Low_complexity Low_complexity 1 49 0 2367 108 0 7 chr15 20204866 20205173 -65490581 + AluSc SINE Alu 1 305 -4 1115 129 0 18 chr15 20205182 20205345 -65490409 + AluSx SINE Alu 1 160 -152 521 344 72 36 chr15 20205413 20205855 -65489899 - L1M4 LINE L1 -6061 481 24 239 317 58 8 chr15 20205871 20205991 -65489763 - L1 LINE L1 -1127 5019 4894 2118 120 0 7 chr15 20205992 20206283 -65489471 + AluSx SINE Alu 1 289 -23 489 230 0 0 chr15 20206293 20206380 -65489374 + FRAM SINE Alu 17 103 -73 1587 200 3 23 chr15 20206484 20206794 -65488960 - AluJo SINE Alu -4 308 5 1972 134 20 7 chr15 20206894 20207054 -65488700 - AluSx SINE Alu -16 296 129 2320 103 0 0 chr15 20207054 20207354 -65488400 - AluSc SINE Alu -9 300 1 1972 134 20 7 chr15 20207354 20207485 -65488269 - AluSx SINE Alu -183 129 1 1972 168 0 0 chr15 20214381 20214678 -65481076 - AluJo SINE Alu -15 297 1 740 222 25 6 chr15 20214678 20214840 -65480914 - MIR3 SINE MIR -11 197 33 2246 130 0 3 chr15 20215946 20216245 -65479509 - AluSx SINE Alu -14 298 1 834 167 0 0 chr15 20218673 20218799 -65476955 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 20219776 20219930 -65475824 - MIR SINE MIR -93 169 34 1860 136 9 22 chr15 20220925 20221106 -65474648 - AluSx SINE Alu 0 312 135 2302 92 0 0 chr15 20221106 20221400 -65474354 - AluSg SINE Alu -16 294 1 1860 136 9 22 chr15 20221400 20221534 -65474220 - AluSx SINE Alu -177 135 1 1924 145 7 0 chr15 20221550 20221846 -65473908 - AluSx SINE Alu -14 298 1 366 259 69 65 chr15 20221848 20222064 -65473690 + L1MC5 LINE L1 7703 7919 -42 1723 88 58 0 chr15 20222602 20222842 -65472912 - AluSp SINE Alu -13 300 47 2128 70 52 3 chr15 20223005 20223292 -65472462 + AluY SINE Alu 1 301 -10 225 0 0 0 chr15 20224087 20224112 -65471642 + (TC)n Simple_repeat Simple_repeat 2 26 0 2223 113 0 0 chr15 20224112 20224413 -65471341 - AluSx SINE Alu -11 301 1 2217 95 0 31 chr15 20224447 20224764 -65470990 - AluSg SINE Alu -3 307 1 2207 109 3 0 chr15 20225377 20225681 -65470073 - AluSq SINE Alu -8 305 1 204 323 156 10 chr15 20225900 20225996 -65469758 + MER5A DNA MER1_type 80 189 0 30 0 0 0 chr15 20228095 20228125 -65467629 + AT_rich Low_complexity Low_complexity 1 30 0 2168 108 3 0 chr15 20228392 20228689 -65467065 + AluSq SINE Alu 1 298 -15 556 74 0 49 chr15 20228825 20228906 -65466848 + Alu SINE Alu 1 77 -241 1305 253 28 83 chr15 20229018 20229124 -65466630 - L1MC/D LINE L1 -2031 5777 5667 1451 155 7 68 chr15 20229124 20229433 -65466321 + AluJo SINE Alu 1 290 -22 1305 253 28 83 chr15 20229433 20229509 -65466245 - L1MC/D LINE L1 -2141 5667 5588 2322 77 0 0 chr15 20229509 20229808 -65465946 + AluY SINE Alu 1 299 -12 1305 253 28 83 chr15 20229808 20230082 -65465672 - L1MC/D LINE L1 -2220 5588 5345 648 223 24 24 chr15 20230088 20230254 -65465500 - FRAM SINE Alu 0 166 1 1075 113 18 6 chr15 20230384 20230552 -65465202 - L1MB5 LINE L1 0 6174 6005 567 29 0 0 chr15 20230552 20230621 -65465133 + MER41A LTR ERV1 400 468 -86 1955 139 45 45 chr15 20230637 20230922 -65464832 - L1MB5 LINE L1 -156 6018 5731 1534 148 44 19 chr15 20230922 20231192 -65464562 - AluJo SINE Alu -25 287 11 1955 139 45 45 chr15 20231192 20231265 -65464489 - L1MB5 LINE L1 -442 5732 5660 2164 93 21 0 chr15 20231266 20231556 -65464198 - AluSg SINE Alu -14 296 1 1531 191 30 3 chr15 20231621 20231925 -65463829 + AluJb SINE Alu 1 312 0 26 64 0 0 chr15 20232010 20232057 -65463697 + AT_rich Low_complexity Low_complexity 1 47 0 1557 139 111 84 chr15 20232133 20232201 -65463553 - MER51A LTR ERV1 0 634 569 2275 94 0 0 chr15 20232201 20232500 -65463254 + AluSx SINE Alu 1 299 -13 1557 139 111 84 chr15 20232500 20232841 -65462913 - MER51A LTR ERV1 -65 569 1 702 96 0 39 chr15 20234443 20234547 -65461207 - AluY SINE Alu -218 100 1 2168 108 3 0 chr15 20234683 20234980 -65460774 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 20235247 20235277 -65460477 + AT_rich Low_complexity Low_complexity 1 30 0 204 323 156 10 chr15 20237378 20237474 -65458280 - MER5A DNA MER1_type 0 189 80 2207 109 3 0 chr15 20237693 20237997 -65457757 + AluSq SINE Alu 1 305 -8 2217 95 0 31 chr15 20238611 20238928 -65456826 + AluSg SINE Alu 1 307 -3 2223 113 0 0 chr15 20238962 20239263 -65456491 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr15 20239263 20239288 -65456466 + (GA)n Simple_repeat Simple_repeat 2 26 0 2069 74 53 3 chr15 20240084 20240369 -65455385 - AluY SINE Alu -10 301 3 830 162 0 21 chr15 20240371 20240513 -65455241 - FLAM_C SINE Alu -3 140 2 1584 154 9 72 chr15 20240514 20240711 -65455043 - AluJo SINE Alu -13 299 91 2178 97 3 7 chr15 20240711 20241021 -65454733 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 20241021 20241056 -65454698 + (TA)n Simple_repeat Simple_repeat 1 35 0 1584 154 9 72 chr15 20241056 20241176 -65454578 - AluJo SINE Alu -219 93 1 2805 201 151 96 chr15 20241176 20241346 -65454408 - L1 LINE L1 -1655 4491 4332 1575 167 39 0 chr15 20241346 20241627 -65454127 + AluJb SINE Alu 1 292 -20 2805 201 151 96 chr15 20241627 20241666 -65454088 - L1 LINE L1 -1814 4332 4297 1766 166 0 0 chr15 20241666 20241944 -65453810 + AluJb SINE Alu 14 291 -21 770 180 0 0 chr15 20241948 20242070 -65453684 - FLAM_C SINE Alu -11 122 1 2805 201 151 96 chr15 20242070 20242093 -65453661 - L1 LINE L1 -1851 4295 4275 1587 177 44 0 chr15 20242093 20242266 -65453488 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 20242266 20242290 -65453464 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 177 44 0 chr15 20242290 20242410 -65453344 - AluJb SINE Alu -198 114 1 2805 201 151 96 chr15 20242410 20243200 -65452554 - L1 LINE L1 -1871 4275 3530 2088 115 3 3 chr15 20243200 20243496 -65452258 + AluSx SINE Alu 1 296 -16 2805 201 151 96 chr15 20243496 20243571 -65452183 - L1 LINE L1 -2616 3530 3461 2563 24 0 3 chr15 20243571 20243867 -65451887 - AluYa5 SINE Alu -16 295 1 2805 201 151 96 chr15 20243867 20243942 -65451812 - L1 LINE L1 -2685 3461 3392 1309 213 72 4 chr15 20243942 20244219 -65451535 - AluJb SINE Alu -16 296 1 2805 201 151 96 chr15 20244219 20244388 -65451366 - L1 LINE L1 -2754 3392 3234 1371 114 111 94 chr15 20244388 20244685 -65451069 + AluJb SINE Alu 1 302 -10 2805 201 151 96 chr15 20244685 20244727 -65451027 - L1 LINE L1 -2912 3234 3196 2006 122 24 0 chr15 20244727 20245023 -65450731 + AluSx SINE Alu 3 305 -7 2805 201 151 96 chr15 20245023 20245294 -65450460 - L1 LINE L1 -2950 3196 2941 1491 182 0 40 chr15 20245294 20245590 -65450164 - AluJo SINE Alu -2 310 27 2331 81 0 3 chr15 20245600 20245909 -65449845 - AluY SINE Alu -3 308 1 2805 201 151 96 chr15 20245909 20245960 -65449794 - L1 LINE L1 -3213 2933 2553 778 211 56 0 chr15 20245961 20246122 -65449632 + FRAM SINE Alu 1 166 -10 1067 196 50 53 chr15 20246125 20246290 -65449464 - L1 LINE L1 -3593 2553 2388 599 188 34 17 chr15 20246290 20246407 -65449347 - FLAM_A SINE Alu -10 123 5 1067 196 50 53 chr15 20246407 20246562 -65449192 - L1 LINE L1 -3758 2388 2234 354 107 0 0 chr15 20246582 20246638 -65449116 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 20246743 20246783 -65448971 + AT_rich Low_complexity Low_complexity 1 40 0 1903 140 0 3 chr15 20246806 20247099 -65448655 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 20247116 20247137 -65448617 + AT_rich Low_complexity Low_complexity 1 21 0 1707 171 0 31 chr15 20247228 20247550 -65448204 - AluJb SINE Alu 0 312 1 1815 145 6 25 chr15 20247553 20247870 -65447884 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 20247870 20247919 -65447835 + AT_rich Low_complexity Low_complexity 1 49 0 2214 108 0 7 chr15 20248002 20248309 -65447445 + AluSc SINE Alu 1 305 -4 339 123 0 10 chr15 20248318 20248521 -65447233 + AluSx SINE Alu 1 296 -4 576 337 75 39 chr15 20248549 20248991 -65446763 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 20249007 20249127 -65446627 - L1 LINE L1 -1127 5019 4894 1948 124 0 7 chr15 20249128 20249419 -65446335 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 20249429 20249516 -65446238 + FRAM SINE Alu 17 103 -73 1446 201 3 19 chr15 20249620 20249929 -65445825 - AluJo SINE Alu -4 308 5 1839 123 20 33 chr15 20250029 20250195 -65445559 - AluSx SINE Alu -16 296 134 2135 103 0 0 chr15 20250195 20250487 -65445267 - AluSc SINE Alu -15 294 3 1839 123 20 33 chr15 20250487 20250620 -65445134 - AluSx SINE Alu -178 134 1 1815 169 0 0 chr15 20257513 20257809 -65437945 - AluJo SINE Alu -16 296 1 741 222 25 6 chr15 20257809 20257971 -65437783 - MIR3 SINE MIR -11 197 33 2196 125 0 3 chr15 20259079 20259392 -65436362 - AluSx SINE Alu 0 312 1 834 167 0 0 chr15 20261820 20261946 -65433808 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 20262923 20263077 -65432677 - MIR SINE MIR -93 169 34 1718 157 26 26 chr15 20264126 20264432 -65431322 + AluJb SINE Alu 1 306 -6 437 110 0 52 chr15 20267062 20267155 -65428599 + L1MB3 LINE L1 6080 6167 -16 372 280 160 8 chr15 20267276 20267401 -65428353 + MIR SINE MIR 1 144 -118 748 259 128 71 chr15 20267428 20267894 -65427860 + MLT1H LTR MaLR 1 548 -1 1111 223 103 13 chr15 20267896 20268196 -65427558 - MER46C DNA MER2_type -11 327 1 343 257 48 29 chr15 20268196 20268301 -65427453 + MIR SINE MIR 156 262 0 1684 146 13 52 chr15 20270229 20270538 -65425216 + AluJo SINE Alu 14 310 -2 706 135 4 2 chr15 20270577 20270838 -65424916 + AluSx SINE Alu 1 310 -2 372 133 0 0 chr15 20271358 20271418 -65424336 + (CA)n Simple_repeat Simple_repeat 2 61 0 288 300 0 0 chr15 20271467 20271557 -65424197 + L1MC4 LINE L1 6614 6703 -1339 252 303 0 0 chr15 20271522 20271611 -65424143 - L1MC4 LINE L1 -1340 6702 6614 * 2352 115 0 13 chr15 20271628 20271804 -65423950 - AluSq SINE Alu -4 309 137 2278 108 0 25 chr15 20271804 20272120 -65423634 - AluSq SINE Alu -5 308 1 2352 115 0 13 chr15 20272120 20272256 -65423498 - AluSq SINE Alu -176 137 1 34 0 0 0 chr15 20272538 20272572 -65423182 + AT_rich Low_complexity Low_complexity 1 34 0 2051 138 3 0 chr15 20272572 20272868 -65422886 - AluSq SINE Alu -16 297 1 2123 114 41 0 chr15 20275853 20276143 -65419611 - AluSx SINE Alu -10 302 1 1891 162 3 13 chr15 20277104 20277413 -65418341 + AluJb SINE Alu 1 306 -6 1541 171 7 79 chr15 20277465 20277597 -65418157 + AluJo SINE Alu 1 141 -197 1457 220 0 14 chr15 20277597 20277883 -65417871 + AluJo SINE Alu 1 282 -30 2374 68 6 40 chr15 20277883 20278205 -65417549 + AluY SINE Alu 1 311 0 2105 108 10 24 chr15 20278207 20278502 -65417252 - AluSg SINE Alu -19 291 1 1541 171 7 79 chr15 20278502 20278725 -65417029 + AluJo SINE Alu 141 338 0 457 253 75 118 chr15 20278981 20279021 -65416733 + L1ME3A LINE L1 5619 5659 -511 1127 174 53 0 chr15 20279021 20279228 -65416526 + MER20 DNA MER1_type 2 219 0 457 253 75 118 chr15 20279228 20279587 -65416167 + L1ME3A LINE L1 5659 6001 -169 2294 101 0 7 chr15 20279981 20280288 -65415466 + AluSq SINE Alu 3 307 -6 404 255 9 19 chr15 20282761 20282867 -65412887 + MIR SINE MIR 48 152 -110 2280 105 0 10 chr15 20282872 20283177 -65412577 + AluSc SINE Alu 1 302 -7 1820 188 0 3 chr15 20283197 20283500 -65412254 + AluJb SINE Alu 1 302 -10 396 254 23 39 chr15 20288572 20288702 -65407052 + MER94 DNA DNA 7 134 0 538 180 99 0 chr15 20289272 20289416 -65406338 + MIR SINE MIR 93 252 -10 1674 125 143 0 chr15 20290419 20290691 -65405063 + AluJb SINE Alu 1 311 -1 380 277 84 26 chr15 20293547 20293702 -65402052 + MIR3 SINE MIR 14 177 -31 2160 117 16 23 chr15 20293810 20294119 -65401635 + AluJb SINE Alu 1 307 -5 1900 153 0 10 chr15 20294155 20294456 -65401298 - AluJb SINE Alu -14 298 1 537 144 31 21 chr15 20294516 20294613 -65401141 + U6 snRNA snRNA 2 99 -8 2265 109 0 3 chr15 20294613 20294917 -65400837 - AluY SINE Alu -8 303 1 304 303 22 0 chr15 20295802 20295891 -65399863 - MIR3 SINE MIR -7 201 111 234 313 0 21 chr15 20297609 20297705 -65398049 - MIR SINE MIR -67 195 102 272 265 26 43 chr15 20297787 20297854 -65397900 - MIR SINE MIR -30 232 166 1817 147 0 15 chr15 20297854 20298126 -65397628 - AluSg SINE Alu -40 270 3 272 265 26 43 chr15 20298126 20298175 -65397579 - MIR SINE MIR -96 166 118 2289 95 0 0 chr15 20298292 20298608 -65397146 + AluSg SINE Alu 1 316 0 1993 131 0 0 chr15 20298728 20299002 -65396752 + AluSx SINE Alu 39 312 0 469 324 199 17 chr15 20299171 20299458 -65396296 - L3 LINE CR1 -20 1557 1219 181 286 20 92 chr15 20299527 20299625 -65396129 - L3 LINE CR1 -542 1035 945 201 323 21 21 chr15 20300342 20300438 -65395316 - MIR SINE MIR -68 140 45 2150 80 8 0 chr15 20300453 20300715 -65395039 + AluSx SINE Alu 39 302 -10 766 293 36 9 chr15 20300824 20301046 -65394708 - MIR SINE MIR 0 262 35 347 208 50 40 chr15 20301116 20301217 -65394537 + L2 LINE L2 3163 3264 -8 1563 153 0 124 chr15 20301540 20301714 -65394040 + AluJo SINE Alu 1 114 -198 2221 108 0 16 chr15 20301714 20302021 -65393733 + AluSg SINE Alu 1 302 -8 1563 153 0 124 chr15 20302021 20302185 -65393569 + AluJo SINE Alu 114 297 -15 354 261 22 0 chr15 20302618 20302710 -65393044 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 20302973 20303002 -65392752 + (TG)n Simple_repeat Simple_repeat 2 30 0 2258 103 3 19 chr15 20305297 20305608 -65390146 - AluSg SINE Alu 0 310 5 565 173 0 0 chr15 20305644 20305748 -65390006 + U13 snRNA snRNA 1 104 0 265 204 0 19 chr15 20306747 20306801 -65388953 + L2 LINE L2 3201 3253 -19 * 429 259 49 48 chr15 20306768 20306940 -65388814 - MIR3 SINE MIR -50 212 37 487 260 202 36 chr15 20307092 20307315 -65388439 - MIR SINE MIR 0 262 3 913 218 86 25 chr15 20309079 20309322 -65386432 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 20310631 20310664 -65385090 + (CAG)n Simple_repeat Simple_repeat 1 33 0 350 256 51 34 chr15 20311220 20311337 -65384417 - MIR3 SINE MIR -7 201 83 2242 91 7 19 chr15 20311572 20311881 -65383873 - AluSx SINE Alu 0 312 8 2053 140 3 7 chr15 20311884 20312184 -65383570 - AluSx SINE Alu -13 299 1 694 194 0 0 chr15 20312400 20312534 -65383220 - FRAM SINE Alu -3 173 40 456 306 0 0 chr15 20312543 20312664 -65383090 - MIR3 SINE MIR -30 178 58 535 254 101 43 chr15 20312919 20313006 -65382748 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 20313006 20313042 -65382712 + (TTG)n Simple_repeat Simple_repeat 2 37 0 535 254 101 43 chr15 20313042 20313163 -65382591 + MIR SINE MIR 122 261 -1 238 156 89 0 chr15 20313131 20313176 -65382578 - L2 LINE L2 -3 3310 3262 * 2008 145 3 3 chr15 20313827 20314124 -65381630 - AluSx SINE Alu -15 297 1 306 172 31 0 chr15 20314223 20314287 -65381467 + MLT1J2 LTR MaLR 69 134 -316 330 315 41 45 chr15 20314344 20314424 -65381330 + MLT1I LTR MaLR 242 321 -88 3004 202 10 46 chr15 20314424 20314646 -65381108 - MER82 DNA MER2_type 0 653 425 2247 96 10 0 chr15 20314646 20314938 -65380816 - AluSc SINE Alu -14 295 1 3004 202 10 46 chr15 20314938 20315124 -65380630 - MER82 DNA MER2_type -228 425 234 2431 94 0 0 chr15 20315124 20315421 -65380333 + AluSx SINE Alu 3 299 -13 3004 202 10 46 chr15 20315421 20315688 -65380066 - MER82 DNA MER2_type -419 234 1 330 315 41 45 chr15 20315688 20315824 -65379930 + MLT1I LTR MaLR 321 409 0 2437 92 0 0 chr15 20316089 20316392 -65379362 + AluY SINE Alu 1 303 -8 2125 112 10 3 chr15 20316394 20316689 -65379065 - AluSp SINE Alu -16 297 1 1268 173 0 9 chr15 20316893 20317113 -65378641 + AluJo SINE Alu 95 312 0 335 237 52 21 chr15 20317189 20317286 -65378468 + L2 LINE L2 3209 3308 -5 1997 129 7 7 chr15 20317393 20317680 -65378074 + AluSx SINE Alu 1 287 -25 374 103 0 52 chr15 20317689 20317747 -65378007 + LTR8 LTR ERV1 549 603 -88 252 246 0 0 chr15 20317748 20317817 -65377937 + GA-rich Low_complexity Low_complexity 1 69 0 232 280 0 0 chr15 20317794 20317865 -65377889 + polypurine Low_complexity Low_complexity 1 71 0 * 1370 112 93 0 chr15 20317960 20318165 -65377589 - AluSq SINE Alu -89 224 1 203 191 0 48 chr15 20318197 20318239 -65377515 - MER5A DNA MER1_type -85 104 65 2343 97 0 0 chr15 20318240 20318528 -65377226 - AluSg SINE Alu -22 288 1 2232 58 46 8 chr15 20318535 20318832 -65376922 - AluY SINE Alu -8 303 1 1503 156 0 35 chr15 20318919 20319175 -65376579 - AluJb SINE Alu -55 257 11 734 182 8 0 chr15 20319201 20319322 -65376432 - FLAM_C SINE Alu -20 123 2 212 0 36 0 chr15 20319639 20319667 -65376087 + (TG)n Simple_repeat Simple_repeat 2 30 0 1304 182 76 51 chr15 20319767 20320042 -65375712 - AluJb SINE Alu -30 282 1 847 169 27 59 chr15 20320042 20320074 -65375680 - L1MB7 LINE L1 -44 6140 6109 2278 95 3 22 chr15 20320074 20320390 -65375364 - AluSq SINE Alu -3 310 1 847 169 27 59 chr15 20320390 20320576 -65375178 - L1MB7 LINE L1 -75 6109 5929 765 219 33 16 chr15 20320860 20321043 -65374711 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 20321369 20321472 -65374282 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 20321609 20321788 -65373966 + L3 LINE CR1 1382 1568 -9 827 195 52 0 chr15 20322167 20322321 -65373433 - FRAM SINE Alu -15 161 1 1332 126 0 16 chr15 20322418 20322609 -65373145 - AluSg/x SINE Alu -33 279 92 2054 126 3 3 chr15 20323277 20323571 -65372183 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 20324785 20324832 -65370922 + GA-rich Low_complexity Low_complexity 2 48 0 1217 204 199 0 chr15 20325144 20325541 -65370213 + L2 LINE L2 2457 2932 -382 979 214 39 101 chr15 20325661 20325885 -65369869 + L2 LINE L2 2852 3038 -275 1613 133 22 67 chr15 20325885 20326200 -65369554 + AluSx SINE Alu 1 301 -11 979 214 39 101 chr15 20326200 20326409 -65369345 + L2 LINE L2 3038 3258 -55 1703 185 26 7 chr15 20326431 20326733 -65369021 - AluJb SINE Alu 0 312 5 681 234 0 58 chr15 20326744 20326915 -65368839 - AluJo SINE Alu -25 287 127 1415 227 52 43 chr15 20327008 20327471 -65368283 - MLT1C LTR MaLR 0 467 1 2325 108 0 0 chr15 20328609 20328914 -65366840 - AluSx SINE Alu -7 305 1 2066 150 16 0 chr15 20329040 20329346 -65366408 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 20329538 20329592 -65366162 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 20329855 20329962 -65365792 - U6 snRNA snRNA 0 107 1 358 230 44 18 chr15 20330060 20330160 -65365594 - MIR SINE MIR -10 252 147 2268 110 3 16 chr15 20330160 20330477 -65365277 - AluSq SINE Alu 0 313 1 358 230 44 18 chr15 20330477 20330489 -65365265 - MIR SINE MIR -115 147 137 2344 101 0 0 chr15 20330502 20330810 -65364944 - AluSc SINE Alu -1 308 1 2161 82 3 73 chr15 20331473 20331788 -65363966 - AluSg SINE Alu -17 293 1 418 293 13 7 chr15 20332174 20332324 -65363430 + MIR SINE MIR 97 247 -15 2280 82 14 0 chr15 20333317 20333636 -65362118 - AluSp SINE Alu 0 323 1 1411 181 58 29 chr15 20333943 20334220 -65361534 - AluJb SINE Alu -26 286 2 580 198 62 62 chr15 20334277 20334326 -65361428 + MER104 DNA Tc2 16 64 -1834 2138 84 0 0 chr15 20334326 20334587 -65361167 - AluSc SINE Alu -14 295 35 580 198 62 62 chr15 20334587 20334699 -65361055 + MER104 DNA Tc2 63 177 -3 1811 125 55 14 chr15 20335570 20335859 -65359895 - AluSx SINE Alu -11 301 1 814 137 0 0 chr15 20336075 20336199 -65359555 - FRAM SINE Alu -15 161 38 2021 132 56 0 chr15 20336716 20337035 -65358719 + MER1B DNA MER1_type 1 337 0 2020 138 10 0 chr15 20337288 20337577 -65358177 - AluJb SINE Alu -18 294 3 1832 147 7 27 chr15 20337728 20338021 -65357733 + AluJb SINE Alu 1 287 -25 1780 127 4 4 chr15 20338531 20338783 -65356971 - AluSq SINE Alu -60 253 2 2184 119 0 7 chr15 20338930 20339240 -65356514 - AluSx SINE Alu -4 308 1 208 244 11 56 chr15 20340877 20340967 -65354787 + (CCCCAG)n Simple_repeat Simple_repeat 2 87 0 25 51 0 0 chr15 20341453 20341492 -65354262 + GC_rich Low_complexity Low_complexity 1 39 0 43350 34 22 4 chr15 20342117 20348145 -65347609 + L1PA3 LINE L1 20 6155 0 207 0 0 0 chr15 20348208 20348231 -65347523 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2226 111 3 0 chr15 20349021 20349319 -65346435 + AluSp SINE Alu 1 299 -14 2112 112 14 7 chr15 20349579 20349875 -65345879 - AluSq SINE Alu -15 298 1 1418 106 5 0 chr15 20349877 20350065 -65345689 - AluSg/x SINE Alu -12 300 112 2142 81 8 0 chr15 20400956 20401217 -65294537 + AluSx SINE Alu 39 301 -11 753 297 36 9 chr15 20401326 20401548 -65294206 - MIR SINE MIR 0 262 35 347 208 50 40 chr15 20401618 20401719 -65294035 + L2 LINE L2 3163 3264 -8 1547 156 0 124 chr15 20402041 20402215 -65293539 + AluJo SINE Alu 1 114 -198 2238 104 0 16 chr15 20402215 20402522 -65293232 + AluSg SINE Alu 1 302 -8 1547 156 0 124 chr15 20402522 20402686 -65293068 + AluJo SINE Alu 114 297 -15 354 261 22 0 chr15 20403119 20403211 -65292543 + MIR3 SINE MIR 98 191 -17 351 0 0 0 chr15 20403474 20403513 -65292241 + (TG)n Simple_repeat Simple_repeat 2 40 0 2256 103 3 19 chr15 20405808 20406119 -65289635 - AluSg SINE Alu 0 310 5 565 173 0 0 chr15 20406155 20406259 -65289495 + U13 snRNA snRNA 1 104 0 265 204 0 19 chr15 20407258 20407312 -65288442 + L2 LINE L2 3201 3253 -19 * 429 259 49 48 chr15 20407279 20407451 -65288303 - MIR3 SINE MIR -50 212 37 487 260 202 36 chr15 20407603 20407826 -65287928 - MIR SINE MIR 0 262 3 913 218 86 25 chr15 20409590 20409833 -65285921 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 20411142 20411175 -65284579 + (CAG)n Simple_repeat Simple_repeat 1 33 0 350 256 51 34 chr15 20411731 20411848 -65283906 - MIR3 SINE MIR -7 201 83 2357 108 0 0 chr15 20412331 20412636 -65283118 - AluSx SINE Alu -7 305 1 1816 146 19 0 chr15 20412763 20413030 -65282724 - AluSx SINE Alu -2 310 39 2253 94 0 3 chr15 20413150 20413467 -65282287 - AluSg SINE Alu 0 316 1 272 265 26 43 chr15 20413584 20413633 -65282121 + MIR SINE MIR 118 166 -96 1817 147 0 15 chr15 20413633 20413905 -65281849 + AluSg SINE Alu 3 270 -40 272 265 26 43 chr15 20413905 20413972 -65281782 + MIR SINE MIR 166 232 -30 234 313 0 21 chr15 20414054 20414150 -65281604 + MIR SINE MIR 102 195 -67 304 303 22 0 chr15 20415868 20415957 -65279797 + MIR3 SINE MIR 111 201 -7 537 198 62 62 chr15 20416494 20416543 -65279211 + MER104 DNA Tc2 16 64 -1834 2162 84 0 0 chr15 20416543 20416804 -65278950 - AluSc SINE Alu -14 295 35 537 198 62 62 chr15 20416804 20416916 -65278838 + MER104 DNA Tc2 63 177 -3 1817 128 55 14 chr15 20417786 20418075 -65277679 - AluSx SINE Alu -11 301 1 1932 127 18 25 chr15 20418354 20418637 -65277117 - AluJb SINE Alu -31 281 1 380 277 84 26 chr15 20418745 20418900 -65276854 - MIR3 SINE MIR -31 177 14 520 341 133 8 chr15 20421699 20422048 -65273706 + L1 LINE L1 858 3199 -1231 578 180 99 0 chr15 20423027 20423171 -65272583 - MIR SINE MIR -10 252 93 408 254 23 39 chr15 20423741 20423871 -65271883 - MER94 DNA DNA 0 134 7 1668 175 0 3 chr15 20428943 20429235 -65266519 - AluJb SINE Alu -10 302 12 2123 105 0 10 chr15 20429266 20429571 -65266183 - AluSc SINE Alu -7 302 1 431 255 9 19 chr15 20429576 20429682 -65266072 - MIR SINE MIR -110 152 48 2037 110 3 17 chr15 20432144 20432443 -65263311 - AluSq SINE Alu -18 295 1 2173 107 0 0 chr15 20432468 20432776 -65262978 - AluSc SINE Alu -1 308 1 189 171 0 0 chr15 20432776 20432811 -65262943 - MIR SINE MIR -118 144 110 2091 76 3 73 chr15 20433437 20433752 -65262002 - AluSg SINE Alu -17 293 1 475 293 13 7 chr15 20434138 20434288 -65261466 + MIR SINE MIR 97 247 -15 533 269 47 21 chr15 20435043 20435277 -65260477 + L1M4 LINE L1 2509 2748 -3398 12912 122 37 27 chr15 20435287 20436239 -65259515 + Tigger1 DNA MER2_type 171 1112 -1306 2095 103 0 3 chr15 20436239 20436530 -65259224 - AluSq SINE Alu -13 300 11 12912 122 37 27 chr15 20436530 20436576 -65259178 + Tigger1 DNA MER2_type 1112 1156 -1262 1510 133 90 18 chr15 20436576 20436854 -65258900 + AluJb SINE Alu 1 298 -14 12912 122 37 27 chr15 20436854 20437912 -65257842 + Tigger1 DNA MER2_type 1156 2248 -170 2191 61 17 14 chr15 20437912 20438205 -65257549 - AluY SINE Alu -17 294 1 1307 220 0 14 chr15 20438205 20438491 -65257263 - AluJo SINE Alu -30 282 1 734 216 0 0 chr15 20438497 20438622 -65257132 - FLAM_C SINE Alu -7 126 2 1733 162 3 13 chr15 20438675 20438984 -65256770 - AluJb SINE Alu -6 306 1 184 315 0 0 chr15 20438992 20439046 -65256708 + L2 LINE L2 3256 3309 -4 1924 117 41 3 chr15 20439945 20440236 -65255518 + AluSx SINE Alu 1 302 -10 1894 138 3 0 chr15 20443221 20443517 -65252237 + AluSq SINE Alu 1 297 -16 34 0 0 0 chr15 20443517 20443551 -65252203 + AT_rich Low_complexity Low_complexity 1 34 0 2002 116 3 3 chr15 20444036 20444330 -65251424 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 20445544 20445591 -65250163 + GA-rich Low_complexity Low_complexity 2 48 0 1753 208 103 40 chr15 20445903 20446463 -65249291 + L2 LINE L2 2457 3063 -250 1945 104 6 50 chr15 20446463 20446780 -65248974 + AluSx SINE Alu 1 303 -9 1753 208 103 40 chr15 20446780 20446989 -65248765 + L2 LINE L2 3063 3258 -55 1658 180 27 0 chr15 20447011 20447311 -65248443 - AluJb SINE Alu 0 312 5 680 234 0 58 chr15 20447322 20447493 -65248261 - AluJo SINE Alu -25 287 127 1119 224 31 12 chr15 20447586 20447841 -65247913 - MLT1C LTR MaLR 0 467 208 218 191 0 48 chr15 20448009 20448051 -65247703 - MER5A DNA MER1_type -85 104 65 2189 97 0 0 chr15 20448052 20448340 -65247414 - AluSg SINE Alu -22 288 1 2102 61 41 10 chr15 20448350 20448644 -65247110 - AluY SINE Alu -8 303 1 1384 153 4 35 chr15 20448731 20448986 -65246768 - AluJb SINE Alu -55 257 11 584 192 42 0 chr15 20449009 20449129 -65246625 - FLAM_C SINE Alu -8 125 1 868 158 24 91 chr15 20449391 20449424 -65246330 - L1MB7 LINE L1 -19 6165 6131 405 0 0 0 chr15 20449424 20449469 -65246285 + (TG)n Simple_repeat Simple_repeat 2 46 0 1477 133 75 50 chr15 20449469 20449747 -65246007 - AluJb SINE Alu -27 285 1 868 158 24 91 chr15 20449747 20449779 -65245975 - L1MB7 LINE L1 -52 6132 6099 2151 101 3 16 chr15 20449779 20450095 -65245659 - AluSq SINE Alu -1 312 1 868 158 24 91 chr15 20450095 20450281 -65245473 - L1MB7 LINE L1 -85 6099 5929 769 225 33 11 chr15 20450565 20450747 -65245007 - L1ME3 LINE L1 -10 6152 5967 391 259 51 107 chr15 20451073 20451289 -65244465 + MIR SINE MIR 47 250 -12 252 246 0 0 chr15 20454251 20454320 -65241434 + CT-rich Low_complexity Low_complexity 1 69 0 394 103 0 52 chr15 20454321 20454379 -65241375 - LTR8 LTR ERV1 -88 603 549 1851 131 7 3 chr15 20454388 20454670 -65241084 - AluSx SINE Alu -25 287 5 370 237 52 21 chr15 20454783 20454880 -65240874 - L2 LINE L2 -5 3308 3209 1189 149 0 10 chr15 20454981 20455176 -65240578 - AluJo SINE Alu -25 287 95 192 254 111 0 chr15 20455176 20455239 -65240515 + L2 LINE L2 2339 2408 -906 398 107 0 0 chr15 20455380 20455436 -65240318 + Alu SINE Alu 1 56 -246 361 208 0 0 chr15 20455538 20455610 -65240144 + AluS SINE Alu 229 300 -1 2254 89 0 0 chr15 20456725 20457018 -65238736 - AluY SINE Alu -18 293 1 190 297 161 25 chr15 20457149 20457267 -65238487 - MIR SINE MIR -99 163 30 339 260 0 21 chr15 20457283 20457379 -65238375 - MLT1I LTR MaLR 0 409 316 1807 228 9 44 chr15 20457419 20457687 -65238067 + MER82 DNA MER2_type 1 248 -405 2273 94 0 0 chr15 20457687 20457984 -65237770 - AluSx SINE Alu -13 299 3 1807 228 9 44 chr15 20457984 20458167 -65237587 + MER82 DNA MER2_type 248 436 -217 1334 154 14 57 chr15 20459330 20459609 -65236145 + AluJo SINE Alu 14 280 -32 683 120 4 2 chr15 20459684 20459926 -65235828 + AluSx SINE Alu 1 291 -21 390 129 0 0 chr15 20460463 20460525 -65235229 + (CA)n Simple_repeat Simple_repeat 2 63 0 293 300 0 0 chr15 20460574 20460664 -65235090 + L1MC4 LINE L1 6614 6703 -1339 233 253 0 63 chr15 20460629 20460724 -65235030 - L1MC4 LINE L1 -1340 6702 6614 * 1952 117 0 14 chr15 20460739 20460914 -65234840 - AluSq SINE Alu -5 308 137 2118 108 0 25 chr15 20460914 20461230 -65234524 - AluSq SINE Alu -5 308 1 1952 117 0 14 chr15 20461230 20461337 -65234417 - AluSq SINE Alu -176 137 30 280 227 45 162 chr15 20462121 20462275 -65233479 - MIR SINE MIR -93 169 34 1700 150 26 26 chr15 20463324 20463630 -65232124 + AluJb SINE Alu 1 306 -6 576 337 75 39 chr15 20463974 20464416 -65231338 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 20464432 20464552 -65231202 - L1 LINE L1 -1127 5019 4894 1975 120 0 7 chr15 20464553 20464844 -65230910 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 20464854 20464941 -65230813 + FRAM SINE Alu 17 103 -73 329 245 75 0 chr15 20565901 20565995 -65129759 - HsTC2 DNA Tc2 0 1898 1798 2076 108 0 0 chr15 20566655 20566923 -65128831 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 20567673 20567973 -65127781 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 20568020 20568288 -65127466 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 20568289 20568527 -65127227 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 20568603 20568893 -65126861 + AluSx SINE Alu 1 288 -24 2465 77 0 0 chr15 20569191 20569491 -65126263 + AluSq SINE Alu 1 300 -13 386 267 127 0 chr15 20569499 20569649 -65126105 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 20569990 20570052 -65125702 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 20570542 20570710 -65125044 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 20570714 20570825 -65124929 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 20570836 20571133 -65124621 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 20571138 20571421 -65124333 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 20571466 20571522 -65124232 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 20571522 20571818 -65123936 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 20571818 20571936 -65123818 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 20571936 20572248 -65123506 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 20572253 20572562 -65123192 + AluSx SINE Alu 1 310 -2 2259 88 0 0 chr15 20572568 20572851 -65122903 + AluY SINE Alu 1 283 -28 187 43 0 0 chr15 20572851 20572874 -65122880 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 890 117 21 163 chr15 20572874 20572923 -65122831 + L1MB3 LINE L1 5594 5648 -535 744 220 105 31 chr15 20572926 20573117 -65122637 - MER6B DNA MER2_type -5 205 1 964 154 24 12 chr15 20573130 20573299 -65122455 + L1MB3 LINE L1 5679 5849 -334 2117 78 7 36 chr15 20573363 20573670 -65122084 + AluSq SINE Alu 1 298 -15 1250 207 3 10 chr15 20573682 20573981 -65121773 + AluJo SINE Alu 14 310 -2 2026 117 3 3 chr15 20574246 20574536 -65121218 - AluSx SINE Alu -22 290 1 1230 101 16 16 chr15 20575262 20575451 -65120303 - L1MA4A LINE L1 -64 6239 6051 213 139 0 0 chr15 20575456 20575499 -65120255 + (A)n Simple_repeat Simple_repeat 1 43 0 587 256 194 11 chr15 20575707 20576080 -65119674 + L1MC4a LINE L1 5524 5649 -472 1183 111 0 0 chr15 20576211 20576373 -65119381 - AluSg/x SINE Alu -16 294 133 675 287 100 17 chr15 20576640 20576870 -65118884 + MIR SINE MIR 2 250 -12 1116 271 31 3 chr15 20576876 20577103 -65118651 + L1ME1 LINE L1 5816 6056 -110 2124 112 0 7 chr15 20577103 20577407 -65118347 - AluSx SINE Alu -10 302 1 1116 271 31 3 chr15 20577407 20577500 -65118254 + L1ME1 LINE L1 6056 6145 -21 1621 161 18 3 chr15 20577501 20577786 -65117968 - AluJb SINE Alu -23 289 1 2086 178 55 29 chr15 20577787 20578140 -65117614 - L1M4 LINE L1 -447 5731 5362 2246 88 7 0 chr15 20578140 20578448 -65117306 - AluSx SINE Alu 0 312 3 2086 178 55 29 chr15 20578448 20578549 -65117205 - L1M4 LINE L1 -816 5362 5265 1794 156 0 3 chr15 20578583 20578878 -65116876 + AluJb SINE Alu 1 294 -18 2166 121 0 0 chr15 20578885 20579198 -65116556 + AluSq SINE Alu 1 313 0 1369 93 25 5 chr15 20579200 20579404 -65116350 + L1MB8 LINE L1 5742 5949 -229 2058 88 4 4 chr15 20579412 20579723 -65116031 + AluSg SINE Alu 8 318 0 1191 123 0 0 chr15 20579723 20579894 -65115860 + AluSq SINE Alu 133 303 -10 1486 184 28 18 chr15 20580004 20580287 -65115467 - AluJb SINE Alu -26 286 1 851 143 8 0 chr15 20580290 20580423 -65115331 - AluJo SINE Alu -178 134 1 1022 230 22 9 chr15 20580513 20580739 -65115015 - MIR SINE MIR -21 241 13 2311 57 0 0 chr15 20581480 20581807 -65113947 + AluY SINE Alu 1 327 0 23 0 0 0 chr15 20582017 20582040 -65113714 + AT_rich Low_complexity Low_complexity 1 23 0 621 224 236 69 chr15 20582160 20582241 -65113513 - HAL1b LINE L1 -7 1341 1275 2249 73 7 0 chr15 20582241 20582529 -65113225 + AluSg1 SINE Alu 1 290 -19 621 224 236 69 chr15 20582529 20582879 -65112875 - HAL1b LINE L1 -73 1275 838 1557 93 0 0 chr15 20582883 20583088 -65112666 - AluSg/x SINE Alu -13 297 93 1924 114 11 4 chr15 20583143 20583416 -65112338 - AluSx SINE Alu -37 275 1 1333 207 3 39 chr15 20583819 20584128 -65111626 - AluJo SINE Alu -14 298 1 450 187 48 72 chr15 20584129 20584218 -65111536 + L1MB7 LINE L1 6023 6108 -76 1825 131 7 23 chr15 20584218 20584354 -65111400 + AluSx SINE Alu 1 138 -174 2006 106 3 7 chr15 20584354 20584647 -65111107 + AluSg1 SINE Alu 1 292 -17 1825 131 7 23 chr15 20584647 20584815 -65110939 + AluSx SINE Alu 138 300 -12 450 187 48 72 chr15 20584815 20584891 -65110863 + L1MB7 LINE L1 6108 6184 0 2073 105 7 3 chr15 20585028 20585334 -65110420 - AluSp SINE Alu -6 307 1 264 279 124 70 chr15 20585457 20585494 -65110260 + L2 LINE L2 1759 1793 -1521 1688 154 7 27 chr15 20585494 20585793 -65109961 + AluJo SINE Alu 5 297 -15 264 279 124 70 chr15 20585793 20586085 -65109669 + L2 LINE L2 1793 2106 -1208 1948 155 70 6 chr15 20586447 20586788 -65108966 - MLT1A1 LTR MaLR -2 363 1 2206 76 7 13 chr15 20586825 20587127 -65108627 + AluY SINE Alu 1 300 -11 2337 74 3 0 chr15 20588097 20588396 -65107358 + AluSp SINE Alu 2 301 -12 1923 134 0 0 chr15 20589136 20589419 -65106335 - AluSx SINE Alu -29 283 1 279 405 82 9 chr15 20589731 20589963 -65105791 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 20589964 20590086 -65105668 - MER85 DNA T2_type -6 133 1 2046 126 3 0 chr15 20590332 20590633 -65105121 - AluSq SINE Alu -11 302 1 323 302 40 40 chr15 20590658 20590784 -65104970 - MIR3 SINE MIR -48 160 35 1599 170 3 18 chr15 20590974 20591257 -65104497 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 20591998 20592023 -65103731 + AT_rich Low_complexity Low_complexity 1 25 0 2287 99 0 6 chr15 20592932 20593246 -65102508 + AluSp SINE Alu 1 312 -1 2079 110 20 0 chr15 20593364 20593663 -65102091 + AluSg SINE Alu 5 309 -1 838 114 14 57 chr15 20593689 20593829 -65101925 + AluJo SINE Alu 1 134 -178 2083 87 7 7 chr15 20594614 20594902 -65100852 + AluSq SINE Alu 9 296 -17 359 198 0 6 chr15 20595057 20595129 -65100625 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 20595964 20596017 -65099737 - AluSg/x SINE Alu -142 168 116 2013 80 69 0 chr15 20596524 20596813 -65098941 - AluSp SINE Alu -4 309 1 499 209 310 6 chr15 20597454 20597612 -65098142 + MER3 DNA MER1_type 4 209 0 221 378 54 0 chr15 20598312 20598423 -65097331 + MER5B DNA MER1_type 59 175 -3 2002 81 10 52 chr15 20599266 20599576 -65096178 + AluY SINE Alu 1 297 -14 1881 154 0 3 chr15 20599584 20599877 -65095877 + AluSx SINE Alu 1 292 -20 1225 203 128 8 chr15 20600715 20600981 -65094773 + AluJo SINE Alu 1 298 -4 335 131 98 0 chr15 20600981 20601042 -65094712 + FLAM_A SINE Alu 57 123 -10 2400 64 0 0 chr15 20603821 20604119 -65091635 - AluY SINE Alu -13 298 1 1023 148 12 0 chr15 20604248 20604410 -65091344 + FRAM SINE Alu 1 161 -15 306 0 0 0 chr15 20604438 20604472 -65091282 + (A)n Simple_repeat Simple_repeat 1 34 0 1926 127 7 7 chr15 20604474 20604765 -65090989 + AluSx SINE Alu 1 291 -21 1235 244 124 20 chr15 20604768 20605226 -65090528 - L2 LINE L2 -1536 1778 1273 1558 197 65 34 chr15 20605269 20605344 -65090410 + Charlie4a DNA MER1_type 1 72 -1889 1618 169 3 3 chr15 20605344 20605649 -65090105 - AluJo SINE Alu 0 305 1 1558 197 65 34 chr15 20605649 20605988 -65089766 + Charlie4a DNA MER1_type 72 429 -79 2237 69 0 16 chr15 20605991 20606297 -65089457 - AluY SINE Alu -9 302 2 1112 143 24 38 chr15 20606298 20606507 -65089247 - L1MB2 LINE L1 -42 6129 5924 3706 164 30 8 chr15 20606507 20607129 -65088625 - MER44D DNA MER2_type 0 605 98 1458 146 13 0 chr15 20607129 20607362 -65088392 + AluSx SINE Alu 1 236 -76 230 0 0 32 chr15 20607381 20607412 -65088342 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1642 137 39 0 chr15 20607660 20607915 -65087839 - AluSq SINE Alu -48 265 1 2134 109 3 0 chr15 20607919 20608222 -65087532 - AluSx SINE Alu -8 304 1 1838 241 60 47 chr15 20608236 20608875 -65086879 - HAL1 LINE L1 -245 2262 1616 1239 85 0 6 chr15 20608877 20609042 -65086712 - AluSc SINE Alu -11 298 135 2104 125 0 0 chr15 20609042 20609339 -65086415 - AluSc SINE Alu -12 297 1 2043 106 7 14 chr15 20609342 20609635 -65086119 - AluSx SINE Alu -21 291 1 1457 181 20 43 chr15 20609641 20609800 -65085954 - AluJo SINE Alu -20 292 142 1808 117 3 76 chr15 20609800 20610116 -65085638 - AluSg SINE Alu -17 293 1 1457 181 20 43 chr15 20610116 20610255 -65085499 - AluJo SINE Alu -170 142 1 783 226 92 0 chr15 20610257 20610474 -65085280 - HAL1 LINE L1 -939 1568 1332 29 0 0 0 chr15 20610477 20610506 -65085248 + AT_rich Low_complexity Low_complexity 1 29 0 2186 57 43 0 chr15 20610508 20610789 -65084965 - AluY SINE Alu -18 293 1 2029 128 0 0 chr15 20610797 20611086 -65084668 - AluSx SINE Alu -23 289 1 2143 119 0 0 chr15 20611090 20611402 -65084352 - AluSx SINE Alu 0 312 1 922 210 0 5 chr15 20611412 20611598 -65084156 - FRAM SINE Alu 0 176 1 2173 122 0 0 chr15 20611727 20612039 -65083715 - AluSx SINE Alu 0 312 1 474 243 70 92 chr15 20612050 20612167 -65083587 - HAL1 LINE L1 -1599 908 795 2285 96 0 0 chr15 20612167 20612468 -65083286 + AluY SINE Alu 1 301 -10 474 243 70 92 chr15 20612468 20612535 -65083219 - HAL1 LINE L1 -1712 795 728 180 271 17 0 chr15 20612552 20612611 -65083143 + L2 LINE L2 2896 2955 -317 356 322 96 46 chr15 20612633 20613027 -65082727 - MLT1K LTR MaLR -18 570 157 2327 50 10 10 chr15 20613030 20613332 -65082422 - AluY SINE Alu -9 302 1 2051 111 3 3 chr15 20613434 20613731 -65082023 - AluSp SINE Alu -16 297 1 1726 157 7 17 chr15 20613735 20613900 -65081854 - AluJo SINE Alu -15 297 135 2060 127 3 3 chr15 20613900 20614208 -65081546 - AluSx SINE Alu -4 308 1 1726 157 7 17 chr15 20614208 20614342 -65081412 - AluJo SINE Alu -177 135 1 887 79 0 0 chr15 20614344 20614458 -65081296 - AluY SINE Alu -197 114 1 629 101 0 0 chr15 20614510 20614599 -65081155 - AluJ/FRAM SINE Alu -8 304 216 269 310 92 0 chr15 20614638 20614725 -65081029 + L2 LINE L2 2615 2709 -605 425 312 51 0 chr15 20614749 20614887 -65080867 + MIR SINE MIR 48 192 -70 2478 47 0 0 chr15 20614900 20615201 -65080553 + AluY SINE Alu 1 301 -10 298 262 107 41 chr15 20615399 20615521 -65080233 + L2 LINE L2 2924 3053 -219 1847 110 20 33 chr15 20615758 20615893 -65079861 + AluSx SINE Alu 1 136 -176 2191 100 0 3 chr15 20615893 20616192 -65079562 + AluSx SINE Alu 3 300 -12 1847 110 20 33 chr15 20616192 20616357 -65079397 + AluSx SINE Alu 136 297 -15 234 160 0 0 chr15 20616399 20616449 -65079305 + GA-rich Low_complexity Low_complexity 2 51 0 1931 140 0 10 chr15 20616514 20616814 -65078940 + AluSq SINE Alu 1 297 -16 1947 115 4 0 chr15 20616814 20617093 -65078661 + AluSg SINE Alu 1 280 -30 803 176 52 0 chr15 20617106 20617259 -65078495 + AluJb SINE Alu 136 296 -16 297 75 0 0 chr15 20617259 20617299 -65078455 + (TA)n Simple_repeat Simple_repeat 2 41 0 1655 134 84 0 chr15 20617389 20617651 -65078103 - AluSg SINE Alu -26 284 1 213 39 0 0 chr15 20617702 20617728 -65078026 + (T)n Simple_repeat Simple_repeat 1 26 0 674 178 34 0 chr15 20618296 20618414 -65077340 + FLAM_C SINE Alu 2 123 -20 208 380 50 30 chr15 20619685 20619785 -65075969 - MIR3 SINE MIR -93 115 14 512 176 108 10 chr15 20619792 20619894 -65075860 + MER6B DNA MER2_type 4 115 -161 1255 130 8 20 chr15 20619894 20620133 -65075621 - AluJb SINE Alu -9 303 1 565 224 0 9 chr15 20620133 20620240 -65075514 + MER6B DNA MER2_type 102 207 -3 2168 109 3 13 chr15 20620817 20621129 -65074625 - AluSq SINE Alu 0 313 5 221 217 22 0 chr15 20621145 20621191 -65074563 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 20623410 20623499 -65072255 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 20623545 20623652 -65072102 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 20624255 20624553 -65071201 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 20624707 20624987 -65070767 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 20624993 20625288 -65070466 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 20627067 20627375 -65068379 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 20627975 20628129 -65067625 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 20634066 20634242 -65061512 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 20634246 20634652 -65061102 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 20634666 20634722 -65061032 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 20634722 20635033 -65060721 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 20635033 20635084 -65060670 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 20636666 20636819 -65058935 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 20636851 20636983 -65058771 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 20638168 20638273 -65057481 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 20638877 20638905 -65056849 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 20639106 20639415 -65056339 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 20639638 20639994 -65055760 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 20640106 20640154 -65055600 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 20640274 20640384 -65055370 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 20641354 20641496 -65054258 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 20642519 20642816 -65052938 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 20642825 20643232 -65052522 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 20644466 20644610 -65051144 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 20644658 20644757 -65050997 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 20645305 20645414 -65050340 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 20646266 20646580 -65049174 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 20647037 20647338 -65048416 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 20648385 20648423 -65047331 - L2 LINE L2 -9 3304 3267 2611 59 0 0 chr15 20648496 20648802 -65046952 - AluY SINE Alu -5 306 1 882 172 53 0 chr15 20649278 20649429 -65046325 - AluJo/FRAM SINE Alu -7 295 137 1221 96 102 0 chr15 20649429 20649595 -65046159 - AluSc SINE Alu -14 295 113 2178 89 0 17 chr15 20649695 20649988 -65045766 - AluY SINE Alu -23 288 1 1405 55 0 0 chr15 20650002 20650166 -65045588 - AluY SINE Alu -20 291 128 2124 64 35 18 chr15 20650172 20650455 -65045299 - AluSg SINE Alu -22 288 1 819 244 48 19 chr15 20655064 20655273 -65040481 + MIR SINE MIR 34 248 -14 2289 108 0 3 chr15 20656624 20656919 -65038835 - AluSg SINE Alu -16 294 1 2355 88 0 7 chr15 20657282 20657577 -65038177 - AluSc SINE Alu -16 293 1 245 231 200 10 chr15 20657990 20658089 -65037665 - MIR SINE MIR -91 117 38 2092 121 10 26 chr15 20661513 20661820 -65033934 + AluSg SINE Alu 1 302 -8 2235 101 7 26 chr15 20661822 20662129 -65033625 + AluSg SINE Alu 3 303 -7 826 168 0 0 chr15 20662135 20662254 -65033500 + FLAM_C SINE Alu 1 119 -24 1541 171 20 30 chr15 20662334 20662632 -65033122 + AluJo SINE Alu 1 295 -17 2280 86 20 13 chr15 20662736 20663037 -65032717 + AluSq SINE Alu 1 303 -10 1472 75 16 5 chr15 20663100 20663286 -65032468 + AluY SINE Alu 1 188 -123 187 97 161 0 chr15 20664490 20664521 -65031233 - L2 LINE L2 -858 2456 2421 2231 114 0 0 chr15 20664842 20665140 -65030614 - AluY SINE Alu -13 298 1 911 178 22 43 chr15 20665168 20665353 -65030401 - AluJb SINE Alu -2 310 130 2145 110 4 0 chr15 20665821 20666131 -65029623 + AluSg SINE Alu 1 311 0 2035 120 0 0 chr15 20666297 20666564 -65029190 + AluSx SINE Alu 1 267 -45 1715 127 16 0 chr15 20666688 20666941 -65028813 + AluSx SINE Alu 42 298 -14 749 259 156 36 chr15 20666960 20667451 -65028303 + MLT1H LTR MaLR 5 589 -6 2296 96 7 7 chr15 20668245 20668546 -65027208 - AluSg SINE Alu -9 301 1 2269 95 14 0 chr15 20668708 20669002 -65026752 + AluSp SINE Alu 1 298 -15 2091 132 7 0 chr15 20669921 20670210 -65025544 - AluJb SINE Alu -17 295 5 2237 115 3 7 chr15 20670374 20670670 -65025084 - AluSx SINE Alu -17 295 1 1527 166 87 85 chr15 20670686 20670970 -65024784 + MER119 DNA MER1_type 130 417 -166 2465 84 3 6 chr15 20670970 20671281 -65024473 - AluSg SINE Alu 0 310 1 1527 166 87 85 chr15 20671281 20671442 -65024312 + MER119 DNA MER1_type 417 576 -7 527 232 49 14 chr15 20671731 20671873 -65023881 + MIR SINE MIR 59 205 -57 2499 79 0 0 chr15 20672752 20673055 -65022699 - AluY SINE Alu -8 303 1 453 282 103 0 chr15 20673062 20673236 -65022518 + L1M4 LINE L1 3587 3778 -2368 216 67 0 0 chr15 20673241 20673271 -65022483 + (A)n Simple_repeat Simple_repeat 1 30 0 1528 199 24 20 chr15 20673347 20673639 -65022115 + AluJo SINE Alu 1 293 -19 1975 144 0 27 chr15 20673646 20673931 -65021823 + AluSx SINE Alu 1 279 -33 217 0 0 0 chr15 20673931 20673955 -65021799 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1975 144 0 27 chr15 20673955 20673968 -65021786 + AluSx SINE Alu 279 291 -21 839 155 0 40 chr15 20674030 20674178 -65021576 - FLAM_C SINE Alu -1 142 1 2209 109 0 10 chr15 20674256 20674568 -65021186 - AluSg SINE Alu -1 309 1 1109 152 0 0 chr15 20674573 20674737 -65021017 - AluSg/x SINE Alu -4 308 145 2145 135 0 0 chr15 20674578 20674881 -65020873 - AluSx SINE Alu -9 303 1 670 226 112 60 chr15 20674919 20675233 -65020521 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 20675671 20675928 -65019826 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 20676138 20676166 -65019588 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 20676254 20676554 -65019200 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 20677092 20677298 -65018456 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 20677301 20677329 -65018425 + AT_rich Low_complexity Low_complexity 1 28 0 237 205 181 12 chr15 20677329 20677412 -65018342 + MER112 DNA MER1_type 49 145 -115 1306 131 4 72 chr15 20677412 20677648 -65018106 - AluSg/x SINE Alu -8 304 85 1589 158 36 0 chr15 20677799 20678052 -65017702 + AluJo SINE Alu 4 265 -47 1589 173 43 0 chr15 20678145 20678423 -65017331 - AluJb SINE Alu -22 290 1 1470 160 26 77 chr15 20679125 20679438 -65016316 + AluJo SINE Alu 1 297 -15 2509 72 0 3 chr15 20680289 20680596 -65015158 - AluY SINE Alu -5 306 1 2206 109 3 0 chr15 20680690 20680983 -65014771 - AluSg SINE Alu -16 294 1 2309 110 0 3 chr15 20681061 20681371 -65014383 + AluSc SINE Alu 1 309 0 2136 139 3 3 chr15 20681423 20681733 -65014021 - AluSx SINE Alu -2 310 1 2084 132 7 0 chr15 20681834 20682130 -65013624 + AluSx SINE Alu 1 298 -14 827 252 159 39 chr15 20682149 20682640 -65013114 + MLT1H LTR MaLR 5 589 -6 2271 100 3 7 chr15 20683434 20683734 -65012020 - AluSg1 SINE Alu -10 299 1 2252 95 14 0 chr15 20683897 20684191 -65011563 + AluSp SINE Alu 1 298 -15 2067 132 7 0 chr15 20685110 20685399 -65010355 - AluJb SINE Alu -17 295 5 2219 115 3 7 chr15 20685563 20685859 -65009895 - AluSx SINE Alu -17 295 1 1655 163 87 87 chr15 20685875 20686160 -65009594 + MER119 DNA MER1_type 130 417 -166 2442 84 3 6 chr15 20686160 20686471 -65009283 - AluSg SINE Alu 0 310 1 1655 163 87 87 chr15 20686471 20686632 -65009122 + MER119 DNA MER1_type 416 576 -7 470 232 49 14 chr15 20686921 20687063 -65008691 + MIR SINE MIR 59 205 -57 2486 79 0 0 chr15 20687942 20688245 -65007509 - AluY SINE Alu -8 303 1 231 282 103 0 chr15 20688252 20688426 -65007328 + L1ME LINE L1 3587 3778 -2368 216 67 0 0 chr15 20688431 20688461 -65007293 + (A)n Simple_repeat Simple_repeat 1 30 0 1491 199 24 20 chr15 20688537 20688829 -65006925 + AluJo SINE Alu 1 293 -19 1953 144 0 27 chr15 20688836 20689158 -65006596 + AluSx SINE Alu 1 312 0 824 132 0 69 chr15 20689224 20689368 -65006386 - AluJo SINE Alu -178 134 1 2001 123 0 7 chr15 20689449 20689759 -65005995 - AluSx SINE Alu 0 308 1 2250 99 3 3 chr15 20689792 20690095 -65005659 + AluY SINE Alu 1 303 -8 1301 101 6 0 chr15 20690095 20690273 -65005481 + AluY SINE Alu 133 311 0 2018 140 0 10 chr15 20690528 20690835 -65004919 - AluJb SINE Alu -8 304 1 1081 128 39 54 chr15 20690847 20691050 -65004704 - AluJo SINE Alu -27 285 86 456 259 139 27 chr15 20691068 20691369 -65004385 + L1ME LINE L1 4377 4711 -1435 265 213 113 0 chr15 20691536 20691616 -65004138 + L1P LINE L1 4919 5007 -1139 229 277 0 20 chr15 20691945 20692046 -65003708 + L1ME LINE L1 5304 5402 -957 563 89 0 0 chr15 20692067 20692146 -65003608 + AluSp/q SINE Alu 224 302 -11 465 236 36 50 chr15 20692146 20692286 -65003468 + L1ME LINE L1 5393 5530 -632 2340 106 0 0 chr15 20692297 20692600 -65003154 - AluSx SINE Alu -9 303 1 1383 167 42 77 chr15 20692611 20692752 -65003002 - AluJo SINE Alu -31 281 154 2305 79 7 7 chr15 20692752 20693063 -65002691 - AluSq SINE Alu 0 313 1 1383 167 42 77 chr15 20693063 20693208 -65002546 - AluJo SINE Alu -158 154 5 2044 127 3 3 chr15 20693304 20693603 -65002151 - AluSx SINE Alu -13 299 1 429 141 0 13 chr15 20693773 20693851 -65001903 + FLAM_A SINE Alu 31 107 -35 230 228 53 9 chr15 20694069 20694183 -65001571 + (TA)n Simple_repeat Simple_repeat 1 119 0 1626 135 87 0 chr15 20695249 20695515 -65000239 - AluSx SINE Alu -23 289 1 1066 88 0 7 chr15 20695515 20695651 -65000103 - AluSq/x SINE Alu -177 135 1 21 0 0 0 chr15 20695720 20695741 -65000013 + AT_rich Low_complexity Low_complexity 1 21 0 1746 161 11 0 chr15 20696108 20696382 -64999372 - AluJb SINE Alu -35 277 1 2329 75 14 3 chr15 20696506 20696799 -64998955 - AluSq SINE Alu -17 296 1 2165 111 0 10 chr15 20697474 20697771 -64997983 - AluSc SINE Alu -15 294 1 2289 99 3 0 chr15 20698824 20699126 -64996628 - AluSg SINE Alu -7 303 1 2520 72 3 0 chr15 20699426 20699732 -64996022 - AluY SINE Alu -4 307 1 479 172 95 0 chr15 20699799 20699915 -64995839 - MER5A DNA MER1_type -2 187 61 237 132 0 0 chr15 20699915 20699953 -64995801 + (T)n Simple_repeat Simple_repeat 1 38 0 593 184 0 0 chr15 20699994 20700092 -64995662 - AluJ/FLAM SINE Alu -213 99 2 288 206 73 0 chr15 20700094 20700162 -64995592 - MER5A DNA MER1_type -116 73 1 2415 83 3 0 chr15 20700207 20700508 -64995246 + AluSp SINE Alu 1 302 -11 1673 136 0 19 chr15 20700603 20700691 -64995063 + AluSx SINE Alu 49 137 -175 1941 139 0 35 chr15 20700691 20701008 -64994746 + AluSx SINE Alu 1 306 -6 1673 136 0 19 chr15 20701008 20701176 -64994578 + AluSx SINE Alu 137 300 -12 1032 148 5 42 chr15 20701176 20701365 -64994389 - AluJo SINE Alu -130 182 1 2104 122 0 3 chr15 20701372 20701660 -64994094 - AluSx SINE Alu -19 293 7 447 182 202 0 chr15 20701660 20701759 -64993995 - HAL1 LINE L1 -752 1755 1637 584 98 12 0 chr15 20701760 20701842 -64993912 - AluSg SINE Alu -11 299 217 1000 122 0 0 chr15 20701842 20701973 -64993781 - AluSg SINE Alu -179 131 1 792 217 71 0 chr15 20701975 20702173 -64993581 - HAL1 LINE L1 -866 1641 1430 761 185 73 20 chr15 20702173 20702324 -64993430 + FRAM SINE Alu 1 157 -19 2072 135 30 0 chr15 20702359 20702662 -64993092 - AluSx SINE Alu 0 312 1 1888 129 20 20 chr15 20702669 20702972 -64992782 - AluSx SINE Alu -3 309 7 362 151 43 108 chr15 20702981 20703074 -64992680 - HAL1 LINE L1 -1122 1385 1299 668 211 0 0 chr15 20703101 20703215 -64992539 - FRAM SINE Alu -23 153 40 2437 80 0 3 chr15 20703232 20703544 -64992210 - AluY SINE Alu 0 311 1 2242 108 0 16 chr15 20703546 20703860 -64991894 - AluSc SINE Alu 0 309 1 241 219 172 42 chr15 20703866 20704104 -64991650 - HAL1 LINE L1 -1210 1297 1029 2284 102 0 35 chr15 20704224 20704537 -64991217 - AluSq SINE Alu -11 302 1 929 148 0 0 chr15 20704537 20704672 -64991082 - AluSq/x SINE Alu -178 135 1 1388 179 13 84 chr15 20705109 20705417 -64990337 + AluJo SINE Alu 1 286 -26 2343 104 7 0 chr15 20705577 20705884 -64989870 - AluSq SINE Alu -4 309 1 499 97 0 14 chr15 20705886 20705958 -64989796 - AluJ/FRAM SINE Alu -16 296 226 351 278 57 66 chr15 20706526 20706677 -64989077 - MIR SINE MIR -6 256 106 2100 126 6 31 chr15 20706677 20706994 -64988760 + AluSp SINE Alu 1 309 -4 351 278 57 66 chr15 20706994 20707054 -64988700 - MIR SINE MIR -156 106 47 184 290 14 58 chr15 20707489 20707558 -64988196 + MIR SINE MIR 49 114 -148 26 50 0 0 chr15 20707592 20707632 -64988122 + AT_rich Low_complexity Low_complexity 1 40 0 2541 62 7 0 chr15 20707793 20708100 -64987654 - AluY SINE Alu -2 309 1 2145 135 0 0 chr15 20708110 20708413 -64987341 - AluSx SINE Alu -9 303 1 680 223 112 60 chr15 20708451 20708765 -64986989 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 20709203 20709460 -64986294 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 20709670 20709698 -64986056 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 20709786 20710086 -64985668 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 20710624 20710830 -64984924 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 20710833 20710861 -64984893 + AT_rich Low_complexity Low_complexity 1 28 0 514 214 112 31 chr15 20710861 20710944 -64984810 + MER112 DNA MER1_type 49 124 -136 1954 129 3 68 chr15 20710944 20711123 -64984631 - AluSx SINE Alu -8 304 154 2166 104 30 3 chr15 20711123 20711421 -64984333 - AluY SINE Alu -5 306 1 1954 129 3 68 chr15 20711421 20711566 -64984188 - AluSx SINE Alu -158 154 1 514 214 112 31 chr15 20711566 20711678 -64984076 + MER112 DNA MER1_type 124 260 0 396 233 62 88 chr15 20711701 20711783 -64983971 + MIR SINE MIR 41 124 -138 2125 115 0 0 chr15 20711783 20712071 -64983683 - AluSg SINE Alu 0 310 23 396 233 62 88 chr15 20712071 20712181 -64983573 + MIR SINE MIR 124 228 -34 349 303 35 35 chr15 20712180 20712322 -64983432 - L2 LINE L2 0 3313 3172 * 227 200 160 0 chr15 20712822 20712872 -64982882 + L2 LINE L2 3256 3313 0 1863 179 10 0 chr15 20712941 20713248 -64982506 - AluJb SINE Alu -2 310 1 23 33 0 0 chr15 20713292 20713322 -64982432 + AT_rich Low_complexity Low_complexity 1 30 0 491 284 70 82 chr15 20713437 20713768 -64981986 - L1MC4a LINE L1 -457 5664 5338 2178 93 21 7 chr15 20714263 20714554 -64981200 + AluSx SINE Alu 1 295 -17 1614 64 0 81 chr15 20714555 20714790 -64980964 + AluY SINE Alu 1 216 -95 2245 104 3 3 chr15 20714872 20715179 -64980575 + AluSp SINE Alu 1 307 -6 466 187 48 72 chr15 20715316 20715392 -64980362 - L1MB7 LINE L1 0 6184 6108 1945 131 7 23 chr15 20715392 20715560 -64980194 - AluSx SINE Alu -12 300 138 2129 106 3 7 chr15 20715560 20715853 -64979901 - AluSg1 SINE Alu -17 292 1 1945 131 7 23 chr15 20715853 20715989 -64979765 - AluSx SINE Alu -174 138 1 466 187 48 72 chr15 20715989 20716078 -64979676 - L1MB7 LINE L1 -76 6108 6023 1442 204 3 39 chr15 20716079 20716388 -64979366 + AluJo SINE Alu 1 298 -14 2047 114 11 4 chr15 20716791 20717064 -64978690 + AluSx SINE Alu 1 275 -37 1644 93 0 0 chr15 20717119 20717324 -64978430 + AluSg/x SINE Alu 93 297 -13 366 219 27 75 chr15 20717614 20717678 -64978076 + HAL1b LINE L1 1203 1269 -79 2379 73 7 0 chr15 20717678 20717966 -64977788 - AluSg1 SINE Alu -19 290 1 366 219 27 75 chr15 20717966 20718047 -64977707 + HAL1b LINE L1 1269 1341 -7 23 0 0 0 chr15 20718167 20718190 -64977564 + AT_rich Low_complexity Low_complexity 1 23 0 2442 57 0 0 chr15 20718400 20718727 -64977027 - AluY SINE Alu 0 327 1 923 230 22 9 chr15 20719468 20719694 -64976060 + MIR SINE MIR 13 241 -21 904 143 8 0 chr15 20719784 20719917 -64975837 + AluJo SINE Alu 1 134 -178 1599 184 28 18 chr15 20719920 20720203 -64975551 + AluJb SINE Alu 1 286 -26 1260 123 0 0 chr15 20720313 20720484 -64975270 - AluSq SINE Alu -10 303 133 291 54 0 0 chr15 20720484 20720521 -64975233 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2216 88 4 0 chr15 20720522 20720794 -64974960 - AluSg SINE Alu -30 280 8 1380 93 25 5 chr15 20720802 20721006 -64974748 - L1MB8 LINE L1 -229 5949 5742 2288 121 0 0 chr15 20721008 20721321 -64974433 - AluSq SINE Alu 0 313 1 1912 156 0 3 chr15 20721328 20721623 -64974131 - AluJb SINE Alu -18 294 1 2109 178 55 29 chr15 20721657 20721758 -64973996 + L1M4 LINE L1 5265 5362 -816 2445 78 7 0 chr15 20721758 20722066 -64973688 + AluSx SINE Alu 3 312 0 2109 178 55 29 chr15 20722066 20722419 -64973335 + L1M4 LINE L1 5362 5731 -447 1732 161 18 3 chr15 20722420 20722705 -64973049 + AluJb SINE Alu 1 289 -23 1127 271 31 3 chr15 20722706 20722799 -64972955 - L1ME1 LINE L1 -21 6145 6056 2251 112 0 7 chr15 20722799 20723103 -64972651 + AluSx SINE Alu 1 302 -10 1127 271 31 3 chr15 20723103 20723330 -64972424 - L1ME1 LINE L1 -110 6056 5816 584 287 100 17 chr15 20723336 20723566 -64972188 - MIR SINE MIR -12 250 2 1254 111 0 0 chr15 20723833 20723995 -64971759 + AluSg/x SINE Alu 135 296 -16 612 261 194 11 chr15 20724126 20724499 -64971255 - L1MC4a LINE L1 -472 5649 5524 213 139 0 0 chr15 20724707 20724750 -64971004 + (T)n Simple_repeat Simple_repeat 1 43 0 1242 101 16 16 chr15 20724755 20724944 -64970810 + L1MA4A LINE L1 6051 6239 -64 2252 121 3 3 chr15 20725670 20725976 -64969778 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr15 20726094 20726115 -64969639 + (T)n Simple_repeat Simple_repeat 1 21 0 1817 116 0 0 chr15 20726130 20726363 -64969391 - AluSg SINE Alu -77 233 1 2125 92 33 0 chr15 20726377 20726678 -64969076 - AluSp SINE Alu 0 310 1 1793 167 22 0 chr15 20728101 20728377 -64967377 + AluJb SINE Alu 1 282 -30 1555 158 13 77 chr15 20728629 20728939 -64966815 - AluJb SINE Alu -22 290 1 1674 160 77 7 chr15 20729043 20729330 -64966424 - AluJo SINE Alu -5 307 1 2350 102 0 3 chr15 20729964 20730267 -64965487 - AluSg SINE Alu -8 302 1 204 40 0 0 chr15 20730404 20730429 -64965325 + (T)n Simple_repeat Simple_repeat 1 25 0 2033 138 3 49 chr15 20730440 20730629 -64965125 - AluSx SINE Alu -2 310 141 2483 87 0 0 chr15 20730629 20730940 -64964814 - AluY SINE Alu 0 311 1 2033 138 3 49 chr15 20730940 20731075 -64964679 - AluSx SINE Alu -171 141 1 2088 133 3 10 chr15 20731077 20731370 -64964384 - AluSx SINE Alu -21 291 1 4325 143 64 49 chr15 20731370 20731710 -64964044 - L1MA8 LINE L1 -1 6290 5956 1463 203 7 4 chr15 20731710 20731991 -64963763 - AluJo SINE Alu -30 282 1 4325 143 64 49 chr15 20731991 20732028 -64963726 - L1MA8 LINE L1 -335 5956 5921 825 91 0 0 chr15 20732028 20732138 -64963616 - HY1 scRNA scRNA -2 110 1 4325 143 64 49 chr15 20732138 20732713 -64963041 - L1MA8 LINE L1 -370 5921 5323 2128 137 3 6 chr15 20732713 20733026 -64962728 - AluSq SINE Alu -1 312 1 1133 109 15 55 chr15 20733039 20733221 -64962533 - AluSg/x SINE Alu 0 310 135 2176 117 7 10 chr15 20733221 20733395 -64962359 - AluSx SINE Alu -5 307 133 2200 127 7 0 chr15 20733395 20733703 -64962051 - AluSx SINE Alu -2 310 1 2176 117 7 10 chr15 20733703 20733836 -64961918 - AluSx SINE Alu -179 133 1 1133 109 15 55 chr15 20733836 20733854 -64961900 - AluSg/x SINE Alu -175 135 118 2523 75 0 3 chr15 20734755 20735060 -64960694 - AluSq SINE Alu -9 304 1 230 257 199 35 chr15 20735490 20735661 -64960093 - MER112 DNA MER1_type -2 258 60 29 0 0 0 chr15 20735686 20735715 -64960039 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr15 20736422 20736442 -64959312 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr15 20736925 20736946 -64958808 + (T)n Simple_repeat Simple_repeat 1 21 0 191 367 42 8 chr15 20737932 20738052 -64957702 - L2 LINE L2 -586 2728 2605 371 274 137 8 chr15 20738232 20738349 -64957405 + MIR3 SINE MIR 11 142 -66 2376 95 0 3 chr15 20738390 20738694 -64957060 - AluSg SINE Alu -7 303 1 26 30 0 0 chr15 20738898 20738931 -64956823 + AT_rich Low_complexity Low_complexity 1 33 0 862 244 78 0 chr15 20740109 20740314 -64955440 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr15 20741670 20741691 -64954063 + AT_rich Low_complexity Low_complexity 1 21 0 2163 127 0 13 chr15 20742750 20743050 -64952704 + AluSx SINE Alu 1 296 -16 2080 115 4 0 chr15 20743050 20743329 -64952425 + AluSg SINE Alu 1 280 -30 873 192 48 0 chr15 20743342 20743496 -64952258 + AluJb SINE Alu 136 300 -12 300 53 0 0 chr15 20743496 20743534 -64952220 + (TA)n Simple_repeat Simple_repeat 2 39 0 873 192 48 0 chr15 20743534 20743546 -64952208 + AluJb SINE Alu 300 310 -2 1805 130 84 0 chr15 20743624 20743886 -64951868 - AluSg SINE Alu -26 284 1 222 37 0 0 chr15 20743937 20743964 -64951790 + (T)n Simple_repeat Simple_repeat 1 27 0 693 178 34 0 chr15 20744532 20744650 -64951104 + FLAM_C SINE Alu 2 123 -20 209 380 50 30 chr15 20745921 20746021 -64949733 - MIR3 SINE MIR -93 115 14 480 176 108 10 chr15 20746028 20746130 -64949624 + MER6B DNA MER2_type 4 115 -161 1356 130 8 20 chr15 20746130 20746369 -64949385 - AluJb SINE Alu -9 303 1 539 224 0 9 chr15 20746369 20746476 -64949278 + MER6B DNA MER2_type 102 207 -3 2322 109 3 13 chr15 20747053 20747365 -64948389 - AluSq SINE Alu 0 313 5 219 217 22 0 chr15 20747381 20747427 -64948327 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 20749646 20749735 -64946019 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 20749781 20749888 -64945866 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 20750491 20750789 -64944965 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 20750943 20751223 -64944531 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 20751229 20751524 -64944230 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 20753304 20753612 -64942142 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 20754212 20754366 -64941388 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 20760303 20760479 -64935275 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 20760483 20760889 -64934865 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 20760903 20760959 -64934795 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 20760959 20761270 -64934484 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 20761270 20761321 -64934433 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 20762903 20763056 -64932698 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 20763088 20763220 -64932534 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 20764405 20764510 -64931244 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 20765114 20765142 -64930612 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 20765343 20765652 -64930102 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 20765875 20766231 -64929523 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 20766343 20766391 -64929363 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 20766511 20766621 -64929133 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 20767591 20767733 -64928021 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 20768756 20769053 -64926701 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 20769062 20769469 -64926285 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 20770703 20770847 -64924907 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 20770895 20770994 -64924760 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 20771542 20771651 -64924103 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 20772503 20772817 -64922937 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 20773274 20773575 -64922179 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 20774622 20774660 -64921094 - L2 LINE L2 -9 3304 3267 2637 52 0 0 chr15 20774733 20775039 -64920715 - AluY SINE Alu -5 306 1 1853 140 32 3 chr15 20775517 20775666 -64920088 - AluJb SINE Alu -19 293 150 2119 93 61 0 chr15 20775666 20775944 -64919810 - AluSc SINE Alu -14 295 1 1853 140 32 3 chr15 20775944 20776079 -64919675 - AluJb SINE Alu -162 150 1 1485 153 0 4 chr15 20776252 20776488 -64919266 + AluJb SINE Alu 70 304 -8 2070 123 0 16 chr15 20777251 20777568 -64918186 + AluSx SINE Alu 1 312 0 2008 136 3 0 chr15 20777609 20777918 -64917836 - AluSx SINE Alu -2 310 1 547 91 23 11 chr15 20778653 20778741 -64917013 + AluJ/FRAM SINE Alu 224 312 0 783 265 56 8 chr15 20778863 20779112 -64916642 - MIR SINE MIR 0 262 2 2633 171 68 6 chr15 20779320 20779805 -64915949 + MLT1F1 LTR MaLR 3 517 -50 360 294 224 0 chr15 20780143 20780286 -64915468 + MER5A DNA MER1_type 9 183 -6 2088 90 6 50 chr15 20780878 20781201 -64914553 + AluSq SINE Alu 1 309 -4 322 273 216 0 chr15 20781866 20781954 -64913800 - MIR SINE MIR -65 143 37 261 161 45 152 chr15 20782498 20782610 -64913144 + L2 LINE L2 3173 3272 -41 250 26 51 0 chr15 20782612 20782651 -64913103 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 443 211 53 45 chr15 20782658 20782791 -64912963 - L2 LINE L2 -29 3284 3151 374 217 158 127 chr15 20782784 20782880 -64912874 - MIR SINE MIR 0 262 171 * 2348 87 3 3 chr15 20782880 20783192 -64912562 - AluSx SINE Alu 0 312 1 374 217 158 127 chr15 20783192 20783316 -64912438 - MIR SINE MIR -91 171 35 1228 135 82 14 chr15 20783322 20783529 -64912225 + MER58A DNA MER1_type 1 221 -3 469 188 42 21 chr15 20784714 20784810 -64910944 - MIR SINE MIR -75 187 90 2226 93 0 3 chr15 20784945 20785245 -64910509 - AluSq SINE Alu -13 300 2 2052 95 25 3 chr15 20785566 20785851 -64909903 - AluSx SINE Alu -21 291 1 2264 78 7 0 chr15 20786310 20786605 -64909149 + AluSq SINE Alu 1 297 -16 391 244 24 12 chr15 20788860 20788942 -64906812 + L2 LINE L2 3156 3238 -34 611 250 94 26 chr15 20790357 20790549 -64905205 + MIR SINE MIR 25 229 -33 198 273 0 0 chr15 20790596 20790640 -64905114 + L2 LINE L2 3217 3260 -12 1880 146 3 3 chr15 20790835 20791136 -64904618 - AluSx SINE Alu -11 301 1 827 302 57 74 chr15 20791346 20791820 -64903934 - L2 LINE L2 0 3272 2807 348 259 32 63 chr15 20792075 20792233 -64903521 + MIR3 SINE MIR 46 198 -10 638 310 16 0 chr15 20792811 20792998 -64902756 + L2 LINE L2 2504 2693 -621 2202 110 0 0 chr15 20793170 20793471 -64902283 - AluSx SINE Alu -11 301 1 470 240 110 0 chr15 20793588 20793742 -64902012 - L1MC4a LINE L1 -1944 5864 5694 929 249 179 27 chr15 20793775 20794263 -64901491 + L2 LINE L2 2752 3309 -4 250 88 0 0 chr15 20794540 20794574 -64901180 + tRNA-Val-GTG tRNA tRNA 2 35 -41 3065 139 12 48 chr15 20794949 20795466 -64900288 + MER41E LTR ERV1 15 512 0 25 0 0 0 chr15 20797154 20797179 -64898575 + AT_rich Low_complexity Low_complexity 1 25 0 354 316 90 7 chr15 20800083 20800238 -64895516 + MIR SINE MIR 22 189 -73 1108 151 6 0 chr15 20801484 20801656 -64894098 - MER5A DNA MER1_type 0 189 17 206 275 14 14 chr15 20802420 20802489 -64893265 + MIR SINE MIR 71 139 -123 341 260 114 104 chr15 20802515 20802991 -64892763 + L1M2 LINE L1 1668 3895 -2953 751 204 0 40 chr15 20804014 20804190 -64891564 + AluSq SINE Alu 2 170 -143 1981 126 0 16 chr15 20804670 20804980 -64890774 + AluSq SINE Alu 1 305 -8 1791 139 7 20 chr15 20805661 20805963 -64889791 - AluJo SINE Alu -14 298 1 817 304 8 40 chr15 20806759 20806838 -64888916 - LTR16A LTR ERVL 0 450 370 1994 104 34 24 chr15 20806838 20807136 -64888618 + AluSx SINE Alu 1 301 -11 817 304 8 40 chr15 20807136 20807309 -64888445 - LTR16A LTR ERVL -80 370 206 182 216 0 0 chr15 20807420 20807457 -64888297 - MIR SINE MIR 0 262 226 322 95 0 0 chr15 20807458 20807500 -64888254 + AluY SINE Alu 1 42 -260 1713 71 0 5 chr15 20807500 20807724 -64888030 + AluY SINE Alu 79 301 -10 582 279 87 0 chr15 20807732 20807915 -64887839 - MIR SINE MIR -44 218 20 1936 116 0 36 chr15 20808342 20808645 -64887109 - AluSx SINE Alu -20 292 1 1286 136 10 5 chr15 20809490 20809689 -64886065 + AluJb SINE Alu 1 200 -112 694 204 26 26 chr15 20809690 20809842 -64885912 - AluJo SINE Alu -47 265 114 1740 139 0 55 chr15 20811171 20811363 -64884391 - AluJb SINE Alu -20 292 122 2190 102 3 3 chr15 20811363 20811667 -64884087 + AluSp SINE Alu 1 304 -9 1740 139 0 55 chr15 20811667 20811783 -64883971 - AluJb SINE Alu -190 122 1 1821 179 114 14 chr15 20811872 20812292 -64883462 + MLT1C LTR MaLR 6 467 0 2175 143 8 30 chr15 20812465 20812828 -64882926 - MSTC LTR MaLR 0 428 74 1249 129 19 129 chr15 20812828 20813138 -64882616 - AluSq SINE Alu -17 296 21 851 205 12 12 chr15 20813149 20813315 -64882439 - L1ME LINE L1 -5616 454 289 785 137 23 8 chr15 20813358 20813489 -64882265 - AluJb SINE Alu -178 134 2 660 289 40 18 chr15 20813502 20813727 -64882027 - L1ME LINE L1 -5830 240 11 23 0 0 0 chr15 20813753 20813776 -64881978 + AT_rich Low_complexity Low_complexity 1 23 0 1506 157 32 21 chr15 20814189 20814470 -64881284 + AluSg1 SINE Alu 9 292 -17 21 0 0 0 chr15 20814869 20814890 -64880864 + AT_rich Low_complexity Low_complexity 1 21 0 780 71 0 0 chr15 20815116 20815214 -64880540 + AluSg/x SINE Alu 198 295 -15 800 286 91 5 chr15 20817142 20817362 -64878392 - MIR SINE MIR -19 243 5 799 105 18 94 chr15 20820243 20820355 -64875399 - L1MA5 LINE L1 -80 6220 6124 2257 88 0 7 chr15 20820355 20820661 -64875093 + AluY SINE Alu 2 305 -6 799 105 18 94 chr15 20820661 20820719 -64875035 - L1MA5 LINE L1 -176 6124 6063 674 44 11 0 chr15 20821167 20821257 -64874497 + (TG)n Simple_repeat Simple_repeat 2 92 0 232 353 128 0 chr15 20823108 20823210 -64872544 - MIR SINE MIR -60 148 34 1952 145 0 7 chr15 20824046 20824349 -64871405 - AluSx SINE Alu -11 301 1 339 215 231 0 chr15 20824752 20824873 -64870881 - MIR SINE MIR -12 250 102 202 299 0 0 chr15 20825167 20825234 -64870520 + A-rich Low_complexity Low_complexity 1 67 0 1489 151 12 81 chr15 20825266 20825598 -64870156 - AluJb SINE Alu -3 309 1 253 273 0 0 chr15 20826461 20826516 -64869238 + MIR3 SINE MIR 151 205 -3 1306 77 0 0 chr15 20826780 20826936 -64868818 - AluSp SINE Alu -24 289 134 1850 137 0 19 chr15 20826936 20827107 -64868647 - AluY SINE Alu -8 303 139 2095 97 28 0 chr15 20827107 20827396 -64868358 - AluY SINE Alu -12 299 3 1850 137 0 19 chr15 20827396 20827531 -64868223 - AluY SINE Alu -172 139 3 18782 33 2 0 chr15 20828089 20830970 -64864784 + L1PA4 LINE L1 3273 6155 0 261 0 0 0 chr15 20830983 20831012 -64864742 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 246 154 0 0 chr15 20831285 20831324 -64864430 + Alu SINE Alu 1 39 -261 537 133 0 0 chr15 20831324 20831434 -64864320 + AluJ/FRAM SINE Alu 226 312 0 393 308 31 39 chr15 20832264 20832394 -64863360 - MIR SINE MIR -89 173 45 2388 89 7 0 chr15 20832477 20832779 -64862975 - AluSp SINE Alu -9 304 1 2049 125 14 3 chr15 20832983 20833278 -64862476 + AluSq SINE Alu 1 298 -15 22 77 0 0 chr15 20833663 20833689 -64862065 + AT_rich Low_complexity Low_complexity 1 26 0 298 266 25 13 chr15 20833822 20833901 -64861853 - AluSc SINE Alu -217 82 3 363 350 10 12 chr15 20833903 20834100 -64861654 - MIR SINE MIR -53 209 16 2163 50 15 12 chr15 20834128 20834387 -64861367 - L1PA8 LINE L1 -4 6168 5909 387 211 145 40 chr15 20834473 20834625 -64861129 - L1MC5 LINE L1 -48 7913 7746 1633 158 28 11 chr15 20835459 20835744 -64860010 - AluJo SINE Alu -11 301 12 355 336 29 0 chr15 20835815 20835919 -64859835 - L2 LINE L2 -2 3270 3164 1604 118 95 23 chr15 20836858 20837120 -64858634 - AluSx SINE Alu -28 284 4 1456 152 141 0 chr15 20837339 20837433 -64858321 + AluSc SINE Alu 2 81 -228 279 0 0 0 chr15 20837433 20837464 -64858290 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1456 152 141 0 chr15 20837464 20837638 -64858116 + AluSc SINE Alu 81 308 -1 1251 102 68 0 chr15 20837787 20837963 -64857791 + AluSg SINE Alu 2 189 -121 765 323 71 45 chr15 20838110 20838188 -64857566 - L3 LINE CR1 -353 1224 1149 2641 49 0 0 chr15 20838188 20838496 -64857258 - AluY SINE Alu -3 308 1 765 323 71 45 chr15 20838496 20838543 -64857211 - L3 LINE CR1 -428 1149 1105 2221 110 0 7 chr15 20838543 20838842 -64856912 - AluSx SINE Alu -15 297 1 765 323 71 45 chr15 20838842 20839177 -64856577 - L3 LINE CR1 -472 1105 751 190 367 23 31 chr15 20839354 20839482 -64856272 - L2 LINE L2 -212 3060 2934 1179 130 0 0 chr15 20839869 20840030 -64855724 - AluSp SINE Alu -13 300 140 2182 122 3 10 chr15 20840033 20840336 -64855418 - AluSx SINE Alu -11 301 1 1775 187 0 20 chr15 20891643 20891937 -64803817 + AluJo SINE Alu 1 288 -24 1845 74 0 9 chr15 20892261 20892492 -64803262 - AluY SINE Alu -10 301 73 658 220 84 58 chr15 20892713 20892861 -64802893 + MIR SINE MIR 3 159 -103 2337 105 0 6 chr15 20892861 20893174 -64802580 + AluSq SINE Alu 1 311 -2 658 220 84 58 chr15 20893174 20893216 -64802538 + MIR SINE MIR 159 198 -64 17419 75 4 3 chr15 20893569 20896093 -64799661 - L1P LINE L1 -985 5161 2636 743 158 62 7 chr15 20896093 20896239 -64799515 - L1P LINE L1 -3421 2725 2572 243 133 0 22 chr15 20896352 20896397 -64799357 - L1MC3 LINE L1 -544 7241 7198 359 253 0 0 chr15 20896415 20896498 -64799256 - MLT1F1 LTR MaLR -448 119 37 1881 158 26 44 chr15 20896500 20896930 -64798824 - L1MC3 LINE L1 -688 7097 6676 298 264 35 35 chr15 20897173 20897260 -64798494 - MIR3 SINE MIR -3 205 119 * 546 283 57 60 chr15 20897232 20897515 -64798239 - L2 LINE L2 -1 3312 3031 1006 307 102 54 chr15 20897619 20898326 -64797428 - L2 LINE L2 -440 2874 2134 197 304 137 0 chr15 20898334 20898436 -64797318 + MIR SINE MIR 129 244 -18 2437 90 0 0 chr15 20899200 20899500 -64796254 + AluSg SINE Alu 1 300 -10 355 225 68 136 chr15 20899521 20899712 -64796042 + MER91A DNA MER1_type 19 196 0 252 289 133 61 chr15 20901004 20901184 -64794570 - L2 LINE L2 -156 3116 2924 364 234 103 7 chr15 20901647 20901792 -64793962 + L1ME4a LINE L1 5738 5896 -225 2254 97 3 7 chr15 20901968 20902268 -64793486 - AluSx SINE Alu -12 300 2 279 372 88 14 chr15 20902596 20902959 -64792795 + L2 LINE L2 2286 2675 -639 226 272 37 25 chr15 20902966 20903047 -64792707 + L2 LINE L2 2783 2864 -450 574 148 117 16 chr15 20903088 20903216 -64792538 - L1MB4 LINE L1 -8 6172 6032 467 315 13 88 chr15 20903225 20903533 -64792221 + L2 LINE L2 2945 3229 -43 512 235 0 0 chr15 20905436 20905534 -64790220 - FLAM_A SINE Alu -23 119 22 483 278 94 48 chr15 20905704 20905897 -64789857 - Tigger8 DNA MER2_type -5 661 478 2233 110 0 0 chr15 20905897 20906189 -64789565 + AluSx SINE Alu 1 292 -20 483 278 94 48 chr15 20906189 20906369 -64789385 - Tigger8 DNA MER2_type -188 478 271 353 151 0 0 chr15 20906447 20906500 -64789254 + Alu SINE Alu 2 54 -247 1435 110 14 182 chr15 20906603 20906920 -64788834 - L1MC1 LINE L1 -394 5939 5711 977 191 18 0 chr15 20906920 20907088 -64788666 - FAM SINE Alu -4 171 1 1435 110 14 182 chr15 20907088 20907199 -64788555 - L1MC1 LINE L1 -622 5711 5583 355 262 213 7 chr15 20907471 20907612 -64788142 + MIR SINE MIR 56 225 -37 214 235 20 0 chr15 20907865 20907916 -64787838 + (TA)n Simple_repeat Simple_repeat 2 53 0 2296 80 23 0 chr15 20908572 20908874 -64786880 - AluY SINE Alu -2 309 1 2353 64 3 10 chr15 20909201 20909499 -64786255 - AluY SINE Alu -15 296 1 1067 79 0 0 chr15 20909499 20909626 -64786128 - AluSg SINE Alu -183 127 1 380 278 19 127 chr15 20910047 20910124 -64785630 + MIR SINE MIR 18 102 -160 1903 110 11 73 chr15 20910124 20910479 -64785275 - L1MA2 LINE L1 0 6304 5972 380 278 19 127 chr15 20910479 20910613 -64785141 + MIR SINE MIR 102 206 -56 733 289 11 66 chr15 20911512 20911862 -64783892 - MER102b DNA MER1_type -1 340 10 265 123 31 0 chr15 20912896 20912961 -64782793 + (TA)n Simple_repeat Simple_repeat 2 68 0 180 0 0 0 chr15 20912981 20913001 -64782753 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 741 167 27 47 chr15 20913004 20913154 -64782600 - FRAM SINE Alu -30 146 1 2211 88 0 72 chr15 20913533 20913853 -64781901 + AluSx SINE Alu 1 297 -15 288 111 0 0 chr15 20914709 20914754 -64781000 + (T)n Simple_repeat Simple_repeat 1 45 0 279 114 0 0 chr15 20915403 20915447 -64780307 + (T)n Simple_repeat Simple_repeat 1 44 0 1006 174 0 0 chr15 20916206 20916367 -64779387 - AluJb SINE Alu -10 302 142 28 29 0 0 chr15 20916367 20916402 -64779352 + AT_rich Low_complexity Low_complexity 1 35 0 1944 135 24 14 chr15 20916403 20916692 -64779062 - AluJb SINE Alu -20 292 1 585 258 16 8 chr15 20917229 20917353 -64778401 + L2 LINE L2 3187 3311 -2 990 351 107 33 chr15 20917403 20917966 -64777788 - L2 LINE L2 -359 2955 2435 2265 61 37 20 chr15 20917966 20918260 -64777494 - AluY SINE Alu -12 299 1 990 351 107 33 chr15 20918260 20918822 -64776932 - L2 LINE L2 -879 2435 1747 221 0 35 0 chr15 20919083 20919112 -64776642 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 2101 132 23 0 chr15 20919146 20919450 -64776304 + AluSx SINE Alu 1 311 -1 318 307 80 22 chr15 20919539 20919714 -64776040 + L1MC/D LINE L1 4369 4532 -1614 1549 143 38 56 chr15 20919714 20920030 -64775724 + AluJb SINE Alu 1 311 0 2027 73 45 73 chr15 20920036 20920350 -64775404 + AluY SINE Alu 1 305 -6 318 307 80 22 chr15 20920350 20920391 -64775363 + L1MC/D LINE L1 4536 4606 -1540 2248 109 3 0 chr15 20920495 20920788 -64774966 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr15 20921002 20921027 -64774727 + AT_rich Low_complexity Low_complexity 1 25 0 303 313 87 7 chr15 20921157 20921307 -64774447 + L1MC/D LINE L1 5320 5481 -761 737 128 0 8 chr15 20921422 20921539 -64774215 - AluSp/q SINE Alu -11 302 187 302 148 0 0 chr15 20921693 20921747 -64774007 - AluJb SINE Alu -7 295 242 1124 129 59 0 chr15 20921750 20921920 -64773834 - AluJb SINE Alu -129 183 4 2004 140 7 0 chr15 20922905 20923208 -64772546 - AluSx SINE Alu 0 305 1 276 179 0 0 chr15 20923450 20923468 -64772286 + A-rich Low_complexity Low_complexity 1 18 -38 2222 124 0 3 chr15 20923468 20923782 -64771972 + AluSq SINE Alu 1 313 0 276 179 0 0 chr15 20923782 20923819 -64771935 + A-rich Low_complexity Low_complexity 17 56 0 29 28 0 0 chr15 20923997 20924033 -64771721 + AT_rich Low_complexity Low_complexity 1 36 0 495 118 0 0 chr15 20924151 20924227 -64771527 - AluJ/FRAM SINE Alu -12 300 225 268 222 42 0 chr15 20924351 20924423 -64771331 - MIR SINE MIR -111 151 77 * 320 269 90 0 chr15 20924418 20924496 -64771258 - L2 LINE L2 -41 3231 3147 2171 168 108 33 chr15 20924527 20925021 -64770733 + MER63C DNA MER1_type 253 797 -263 1702 157 44 4 chr15 20925021 20925295 -64770459 + AluJb SINE Alu 1 285 -27 2171 168 108 33 chr15 20925295 20925373 -64770381 + MER63C DNA MER1_type 797 868 -62 3898 165 87 13 chr15 20925389 20926288 -64769466 + L1MB4 LINE L1 5215 6180 0 2042 127 3 49 chr15 20926298 20926622 -64769132 + AluSx SINE Alu 1 309 -3 245 319 0 0 chr15 20926676 20926748 -64769006 + MER63C DNA MER1_type 859 930 0 514 271 121 27 chr15 20928307 20928680 -64767074 - L1ME LINE L1 -474 5688 5281 203 252 234 0 chr15 20928784 20928891 -64766863 + MIR SINE MIR 125 256 -6 537 279 124 30 chr15 20928940 20929173 -64766581 + MIR SINE MIR 6 260 -2 2196 130 0 0 chr15 20929717 20930018 -64765736 + AluSx SINE Alu 1 301 -11 1668 153 30 34 chr15 20930025 20930320 -64765434 + AluJo SINE Alu 12 305 -7 254 357 123 7 chr15 20930607 20930761 -64764993 - L2 LINE L2 -1 3271 3100 214 204 23 0 chr15 20930937 20930981 -64764773 + L2 LINE L2 3268 3312 -1 24 0 0 0 chr15 20931158 20931182 -64764572 + AT_rich Low_complexity Low_complexity 1 24 0 4273 145 57 23 chr15 20931777 20931803 -64763951 + L1MB7 LINE L1 5093 5117 -1067 2117 132 3 0 chr15 20931803 20932092 -64763662 + AluSx SINE Alu 1 290 -22 4273 145 57 23 chr15 20932092 20933122 -64762632 + L1MB7 LINE L1 5117 6184 0 240 111 0 0 chr15 20933326 20933362 -64762392 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 2105 118 7 7 chr15 20933362 20933650 -64762104 - AluSx SINE Alu -24 288 1 275 288 0 0 chr15 20934531 20934597 -64761157 - L2 LINE L2 0 3272 3207 4088 62 24 0 chr15 20935755 20936289 -64759465 - L1PA7 LINE L1 -1 6153 5607 247 188 0 0 chr15 20936389 20936437 -64759317 - Alu SINE Alu -124 178 131 2432 79 3 0 chr15 20936616 20936920 -64758834 + AluSp SINE Alu 1 305 -8 2156 48 3 35 chr15 20936923 20937234 -64758520 + AluY SINE Alu 1 301 -10 394 275 36 43 chr15 20937350 20937488 -64758266 + L2 LINE L2 3136 3272 0 710 232 23 161 chr15 20938709 20939180 -64756574 + LTR67 LTR ERVL 102 636 79 2107 99 0 11 chr15 20939180 20939463 -64756291 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 20939463 20939488 -64756266 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 710 232 23 161 chr15 20939488 20939536 -64756218 + LTR67 LTR ERVL 497 550 -7 1957 151 17 0 chr15 20939597 20939896 -64755858 + AluJb SINE Alu 1 304 -8 321 248 9 19 chr15 20939980 20940085 -64755669 - L1ME LINE L1 -392 5729 5626 2190 133 3 0 chr15 20940547 20940855 -64754899 + AluSx SINE Alu 2 310 -2 1214 174 0 24 chr15 20941215 20941427 -64754327 + AluJb SINE Alu 87 293 -19 2206 107 0 7 chr15 20941638 20941936 -64753818 - AluSx SINE Alu -16 296 1 25 0 0 0 chr15 20944059 20944084 -64751670 + AT_rich Low_complexity Low_complexity 1 25 0 713 186 32 0 chr15 20944136 20944260 -64751494 - FLAM_A SINE Alu -5 128 1 2052 139 7 0 chr15 20944288 20944583 -64751171 + AluSx SINE Alu 1 297 -15 2049 129 3 3 chr15 20945823 20946109 -64749645 - AluSx SINE Alu -26 286 1 1673 149 0 84 chr15 20946140 20946463 -64749291 - AluJo SINE Alu -16 296 1 31 44 0 0 chr15 20946772 20946817 -64748937 + AT_rich Low_complexity Low_complexity 1 45 0 1911 139 24 10 chr15 20947571 20947859 -64747895 - AluSx SINE Alu -20 292 1 363 358 9 0 chr15 20948019 20948128 -64747626 - MIR SINE MIR -147 115 6 283 226 0 0 chr15 20948835 20948888 -64746866 + MIR SINE MIR 89 141 -67 1766 49 5 0 chr15 20948898 20949121 -64746633 + L1PA8 LINE L1 5940 6163 -9 210 226 0 38 chr15 20949352 20949405 -64746349 + MIR3 SINE MIR 157 207 -1 536 241 0 0 chr15 20949407 20949540 -64746214 + L1MC/D LINE L1 5391 5523 -719 1917 143 0 11 chr15 20949982 20950268 -64745486 - AluSx SINE Alu -29 283 1 464 280 44 93 chr15 20951410 20951626 -64744128 - MLT1I LTR MaLR -26 383 189 2179 112 20 0 chr15 20951626 20951930 -64743824 - AluY SINE Alu -1 310 1 464 280 44 93 chr15 20951930 20952056 -64743698 - MLT1I LTR MaLR -220 189 58 364 247 47 0 chr15 20952981 20953066 -64742688 + L2 LINE L2 3225 3313 0 448 194 111 56 chr15 20953688 20953832 -64741922 - MER5A DNA MER1_type -3 186 35 21 36 0 0 chr15 20954179 20954207 -64741547 + AT_rich Low_complexity Low_complexity 1 28 0 2135 137 25 25 chr15 20955319 20955684 -64740070 - MLT1A1 LTR MaLR 0 365 1 6266 68 13 43 chr15 20955940 20957390 -64738364 + L1PA14 LINE L1 4743 6161 0 635 343 45 0 chr15 20957677 20957922 -64737832 + MIR SINE MIR 2 257 -5 663 274 73 5 chr15 20960423 20960627 -64735127 + MIR SINE MIR 1 218 -44 315 233 176 19 chr15 20960667 20960826 -64734928 - L1M4 LINE L1 -1891 4255 4072 361 341 15 7 chr15 20960831 20960966 -64734788 + L2 LINE L2 1839 1974 -1340 6656 56 24 0 chr15 20960978 20961449 -64734305 - L1PA7 LINE L1 0 6154 5696 2166 113 0 26 chr15 20961449 20961759 -64733995 - AluSc SINE Alu -6 303 2 6656 56 24 0 chr15 20961759 20962504 -64733250 - L1PA7 LINE L1 -458 5696 4926 180 0 0 0 chr15 20962507 20962527 -64733227 + (T)n Simple_repeat Simple_repeat 1 20 0 11400 163 16 76 chr15 20962546 20965336 -64730418 + L1P LINE L1 10 2632 -3514 25 18 0 73 chr15 20965337 20965392 -64730362 + AT_rich Low_complexity Low_complexity 1 51 0 511 279 0 17 chr15 20965431 20965671 -64730083 + L1P LINE L1 2647 2882 -3264 843 207 0 0 chr15 20965837 20965982 -64729772 + FRAM SINE Alu 1 140 -36 198 0 0 0 chr15 20965990 20966012 -64729742 + (TAA)n Simple_repeat Simple_repeat 1 22 0 298 370 46 17 chr15 20966024 20966197 -64729557 - L3 LINE CR1 -1169 408 231 1886 141 3 34 chr15 20967780 20968078 -64727676 - AluSx SINE Alu -23 289 1 24 0 0 0 chr15 20968250 20968274 -64727480 + AT_rich Low_complexity Low_complexity 1 24 0 1837 164 10 7 chr15 20968277 20968575 -64727179 + AluJb SINE Alu 1 299 -13 2166 119 10 0 chr15 20968886 20969189 -64726565 + AluSq SINE Alu 3 308 -5 22 0 0 0 chr15 20970207 20970229 -64725525 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 20971595 20971623 -64724131 + AT_rich Low_complexity Low_complexity 1 28 0 3843 149 17 59 chr15 20971833 20972505 -64723249 + L1MB3 LINE L1 5340 6039 -144 3680 114 8 4 chr15 20972505 20973030 -64722724 - MER1A DNA MER1_type 0 527 1 3843 149 17 59 chr15 20973030 20973126 -64722628 + L1MB3 LINE L1 6039 6137 -46 1791 188 0 0 chr15 20973126 20973414 -64722340 - AluJo SINE Alu -22 290 3 276 53 0 0 chr15 20973419 20973457 -64722297 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2151 113 0 17 chr15 20973457 20973748 -64722006 - AluSg SINE Alu -24 286 1 3843 149 17 59 chr15 20973748 20973803 -64721951 + L1MB3 LINE L1 6080 6136 -47 720 73 0 0 chr15 20973803 20973931 -64721823 + AluSc SINE Alu 183 310 0 643 62 0 0 chr15 20973983 20974064 -64721690 + AluY SINE Alu 1 81 -230 4416 152 35 17 chr15 20974167 20974205 -64721549 - L1MB3 LINE L1 -15 6404 6368 1987 125 17 0 chr15 20974205 20974493 -64721261 - AluSq SINE Alu -20 293 1 4416 152 35 17 chr15 20974493 20975288 -64720466 - L1MB3 LINE L1 -51 6368 5556 652 271 66 31 chr15 20975300 20975684 -64720070 + L1ME3 LINE L1 5219 5617 -545 564 229 64 55 chr15 20975686 20975957 -64719797 + L1ME3 LINE L1 5680 5904 -258 2073 122 10 0 chr15 20975957 20976252 -64719502 - AluSx SINE Alu -14 298 1 999 205 92 7 chr15 20976255 20976558 -64719196 - L1MB3 LINE L1 -814 5568 5240 2656 199 34 69 chr15 20976569 20976753 -64719001 - L1MB3 LINE L1 -1656 4726 4537 2488 93 0 0 chr15 20976753 20977064 -64718690 - AluY SINE Alu 0 311 1 2137 144 0 0 chr15 20977065 20977370 -64718384 - AluSx SINE Alu -7 305 1 1533 181 23 55 chr15 20977372 20977682 -64718072 - AluJo SINE Alu -12 300 1 2656 199 34 69 chr15 20977682 20978385 -64717369 - L1MB3 LINE L1 -1846 4536 3866 3748 144 38 8 chr15 20978394 20979305 -64716449 - L1MB3 LINE L1 -3625 2757 1811 1078 159 43 0 chr15 20979305 20979513 -64716241 - Tigger1 DNA MER2_type 0 2418 2202 844 131 31 56 chr15 20979502 20979609 -64716145 - Tigger1 DNA MER2_type -2261 157 54 * 2517 44 0 0 chr15 20979609 20979903 -64715851 + AluY SINE Alu 1 294 -17 844 131 31 56 chr15 20979903 20979955 -64715799 - Tigger1 DNA MER2_type -2364 54 2 2782 156 32 55 chr15 20979987 20980546 -64715208 - L1MB3 LINE L1 -5823 561 16 6639 71 14 0 chr15 20980603 20982171 -64713583 + L1PA10 LINE L1 4551 6152 -16 23 0 0 0 chr15 20983116 20983139 -64712615 + AT_rich Low_complexity Low_complexity 1 23 0 2211 103 3 0 chr15 20984226 20984536 -64711218 - AluY SINE Alu 0 311 1 2227 102 0 13 chr15 20985058 20985372 -64710382 - AluSg SINE Alu 0 310 1 873 333 152 40 chr15 20985735 20986560 -64709194 + L3 LINE CR1 280 1196 -381 300 289 89 28 chr15 20986593 20987275 -64708479 - L1M4 LINE L1 -1118 5028 4233 2025 143 7 13 chr15 20987275 20987583 -64708171 - AluJb SINE Alu -6 306 1 300 289 89 28 chr15 20987583 20987756 -64707998 - L1M4 LINE L1 -1913 4233 4072 481 291 129 20 chr15 20987773 20988075 -64707679 - L1MDa LINE L1 -3161 3379 3045 235 296 11 0 chr15 20988086 20988174 -64707580 + L1MC4 LINE L1 6615 6703 -1339 378 273 54 66 chr15 20988203 20988438 -64707316 - L1MDa LINE L1 -3529 3011 2782 842 136 8 0 chr15 20988438 20988570 -64707184 - FLAM_C SINE Alu 0 133 1 378 273 54 66 chr15 20988570 20988744 -64707010 - L1MDa LINE L1 -3758 2782 2607 288 0 0 0 chr15 20988849 20988881 -64706873 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chr15 20988948 20988984 -64706770 + AT_rich Low_complexity Low_complexity 1 36 0 1630 134 17 81 chr15 20989029 20989387 -64706367 - L1MB8 LINE L1 -1 6177 5843 452 263 150 17 chr15 20989592 20989885 -64705869 - L1MDa LINE L1 -4602 1938 1607 1686 114 8 4 chr15 20990857 20991093 -64704661 - AluSg SINE Alu -73 237 1 393 293 57 0 chr15 20991546 20991669 -64704085 + L2 LINE L2 2596 2725 -589 * 610 295 112 8 chr15 20991659 20991891 -64703863 + L2 LINE L2 2826 3091 -222 2261 103 0 3 chr15 20991891 20992192 -64703562 + AluSx SINE Alu 1 300 -12 610 295 112 8 chr15 20992192 20992227 -64703527 + L2 LINE L2 3091 3121 -192 964 137 72 13 chr15 20992366 20992519 -64703235 + FRAM SINE Alu 1 161 -15 21 0 0 0 chr15 20992702 20992723 -64703031 + AT_rich Low_complexity Low_complexity 1 21 0 1221 109 0 22 chr15 20993036 20993219 -64702535 - AluY SINE Alu -6 305 127 1977 71 104 0 chr15 20994364 20994632 -64701122 - AluSx SINE Alu -16 296 1 284 272 110 136 chr15 20994910 20995101 -64700653 + MIR3 SINE MIR 16 201 -7 1598 136 17 33 chr15 20995448 20995749 -64700005 + L1MB8 LINE L1 5874 6169 -9 2266 66 0 0 chr15 20995767 20996040 -64699714 + AluY SINE Alu 37 309 -2 2177 112 0 13 chr15 20996738 20997041 -64698713 - AluY SINE Alu -12 299 1 196 370 34 76 chr15 20998093 20998212 -64697542 + L2 LINE L2 3126 3239 -33 2273 110 3 0 chr15 20999635 20999934 -64695820 + AluSx SINE Alu 1 300 -12 672 139 148 0 chr15 20999934 21000049 -64695705 - MER2 DNA MER2_type -213 132 1 951 210 73 15 chr15 21000055 21000353 -64695401 - L1M4 LINE L1 -1162 4984 4623 482 284 44 16 chr15 21000405 21000588 -64695166 - L1M4 LINE L1 -2606 3540 3353 1924 112 11 0 chr15 21001551 21001840 -64693914 + AluSp SINE Alu 16 307 0 931 244 138 0 chr15 21002243 21002468 -64693286 + MIR SINE MIR 6 261 -1 251 296 93 37 chr15 21003450 21003558 -64692196 - L2 LINE L2 -8 3264 3151 237 321 82 57 chr15 21004062 21004464 -64691290 - L2 LINE L2 -1546 1768 1357 4920 152 21 33 chr15 21004558 21004642 -64691112 + L1MB7 LINE L1 5100 5184 -1000 1707 197 34 8 chr15 21004642 21004998 -64690756 - MLT1A1 LTR MaLR 0 365 1 4920 152 21 33 chr15 21004998 21005986 -64689768 + L1MB7 LINE L1 5184 6154 -30 5564 127 48 10 chr15 21006193 21007122 -64688632 + L1MD1 LINE L1 5278 6242 0 764 211 0 0 chr15 21007420 21007553 -64688201 + FLAM_C SINE Alu 1 133 0 246 283 127 14 chr15 21007729 21007897 -64687857 + MIR SINE MIR 37 262 0 830 304 45 14 chr15 21007926 21008212 -64687542 - L3 LINE CR1 -42 1535 1241 259 281 97 18 chr15 21008235 21008349 -64687405 + MIR3 SINE MIR 56 178 -30 345 354 23 0 chr15 21008387 21008517 -64687237 - L3 LINE CR1 -376 1201 1069 764 141 16 8 chr15 21008525 21008690 -64687064 + AluJb SINE Alu 153 318 0 286 363 65 12 chr15 21008765 21008933 -64686821 - L3 LINE CR1 -609 968 792 355 303 41 7 chr15 21009038 21009183 -64686571 - L3 LINE CR1 -704 873 724 21 36 0 0 chr15 21009205 21009233 -64686521 + AT_rich Low_complexity Low_complexity 1 28 0 2216 99 0 0 chr15 21009297 21009580 -64686174 - AluSx SINE Alu -29 283 1 1454 200 20 30 chr15 21010262 21010567 -64685187 + AluJo SINE Alu 1 302 -10 192 253 0 81 chr15 21011506 21011593 -64684161 + MIR3 SINE MIR 84 163 -45 857 78 0 54 chr15 21011912 21012041 -64683713 - AluSg/x SINE Alu -6 306 185 1825 11 0 0 chr15 21013259 21013521 -64682233 - L1PA3 LINE L1 -681 5474 5213 5912 23 0 0 chr15 21013521 21014201 -64681553 + L1PA3 LINE L1 5472 6155 0 4433 148 61 78 chr15 21015840 21016828 -64678926 + L1MB3 LINE L1 4635 5586 -597 487 214 46 30 chr15 21016828 21016959 -64678795 + FLAM_A SINE Alu 1 133 0 4433 148 61 78 chr15 21016959 21017548 -64678206 + L1MB3 LINE L1 5586 6183 0 219 364 20 0 chr15 21017924 21018023 -64677731 - L2 LINE L2 -1005 2309 2209 25 51 0 0 chr15 21019038 21019077 -64676677 + AT_rich Low_complexity Low_complexity 1 39 0 30 45 0 0 chr15 21019469 21019513 -64676241 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr15 21021429 21021466 -64674288 + AT_rich Low_complexity Low_complexity 1 37 0 376 242 30 10 chr15 21021490 21021589 -64674165 + MIR SINE MIR 51 151 -57 921 268 48 78 chr15 21021726 21022099 -64673655 - L3 LINE CR1 -15 1562 1201 249 62 67 134 chr15 21022112 21022190 -64673564 + L1MB8 LINE L1 6106 6184 0 618 260 12 53 chr15 21022735 21022981 -64672773 + L1MEd LINE L1 3 238 -5881 215 404 20 0 chr15 21023096 21023195 -64672559 - L2 LINE L2 -604 2710 2610 * 454 256 123 8 chr15 21023188 21023361 -64672393 - MIR SINE MIR 0 262 74 185 215 108 32 chr15 21023421 21023514 -64672240 - L2 LINE L2 -764 2550 2451 3099 157 36 19 chr15 21023565 21024150 -64671604 + L1MB5 LINE L1 5580 6174 0 1740 160 4 7 chr15 21024463 21024732 -64671022 - AluSx SINE Alu -41 271 4 709 249 95 83 chr15 21024896 21025149 -64670605 + MIR SINE MIR 1 256 -6 459 0 0 0 chr15 21025152 21025203 -64670551 + (CAT)n Simple_repeat Simple_repeat 2 52 0 313 281 109 16 chr15 21025414 21025542 -64670212 - L2 LINE L2 0 3313 3174 1424 133 40 36 chr15 21025550 21025828 -64669926 - L1MB8 LINE L1 -1 6177 5899 869 281 16 16 chr15 21026078 21026327 -64669427 - MIR SINE MIR -8 254 6 1717 186 3 0 chr15 21026836 21027126 -64668628 + AluJb SINE Alu 1 291 -21 233 369 28 13 chr15 21027576 21027706 -64668048 + MIR SINE MIR 38 168 -40 1980 133 17 10 chr15 21027858 21028152 -64667602 - AluSq SINE Alu -15 298 3 225 94 0 0 chr15 21028765 21028797 -64666957 + (CA)n Simple_repeat Simple_repeat 1 32 0 367 235 25 84 chr15 21029827 21029946 -64665808 - L2 LINE L2 -13 3300 3189 2489 86 0 0 chr15 21030342 21030644 -64665110 - AluSc SINE Alu -7 302 1 2484 61 0 0 chr15 21030989 21031286 -64664468 - AluY SINE Alu -14 297 1 284 260 130 41 chr15 21032463 21032609 -64663145 + MER5A DNA MER1_type 2 160 -29 1903 170 0 7 chr15 21032613 21032919 -64662835 - AluJo SINE Alu -8 304 1 2261 110 3 0 chr15 21033339 21033639 -64662115 + AluSp SINE Alu 1 301 -12 184 118 20 20 chr15 21034864 21034915 -64660839 + A-rich Low_complexity Low_complexity 5 55 0 2446 85 0 0 chr15 21035000 21035295 -64660459 + AluSc SINE Alu 1 295 -14 717 193 143 37 chr15 21035985 21036146 -64659608 - MER5A DNA MER1_type 0 189 12 2155 119 0 16 chr15 21036795 21037113 -64658641 - AluSq SINE Alu 0 313 1 2377 87 0 3 chr15 21037625 21037934 -64657820 + AluSc SINE Alu 1 308 -1 384 265 63 29 chr15 21038546 21038691 -64657063 + MER5A DNA MER1_type 7 144 -34 1204 157 0 60 chr15 21040270 21040519 -64655235 - L1MB8 LINE L1 -6 6172 5939 1591 143 59 0 chr15 21040520 21040806 -64654948 + Tigger3(Golem) DNA MER2_type 1 303 -2726 4082 116 81 26 chr15 21040807 21041576 -64654178 + Tigger3(Golem) DNA MER2_type 2218 3028 -1 997 175 74 0 chr15 21041576 21041793 -64653961 - L1MB8 LINE L1 -255 5923 5691 2026 148 27 0 chr15 21041835 21042133 -64653621 - AluJb SINE Alu -6 306 1 243 106 170 0 chr15 21042231 21042278 -64653476 + MLT1A1 LTR MaLR 259 313 -52 968 144 31 2 chr15 21042625 21042872 -64652882 + MER2 DNA MER2_type 23 316 -29 23 0 0 0 chr15 21042959 21042982 -64652772 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 21043033 21043053 -64652701 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 297 331 97 23 chr15 21043057 21043339 -64652415 + L2 LINE L2 2749 3047 -225 213 291 148 82 chr15 21043396 21043578 -64652176 + L2 LINE L2 3064 3257 -15 723 163 7 7 chr15 21043601 21043754 -64652000 - Charlie1 DNA MER1_type -1 2760 2608 313 186 70 12 chr15 21043771 21043857 -64651897 - Charlie1 DNA MER1_type -2655 106 16 469 303 27 5 chr15 21044776 21044964 -64650790 + MER58C DNA MER1_type 1 192 -23 469 200 85 62 chr15 21044982 21045112 -64650642 + FLAM_A SINE Alu 1 133 0 2346 89 3 16 chr15 21045120 21045436 -64650318 + AluSp SINE Alu 1 312 -1 1570 170 15 11 chr15 21045439 21045710 -64650044 + AluJo SINE Alu 3 274 -38 495 0 0 0 chr15 21045723 21045778 -64649976 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 257 231 0 31 chr15 21045799 21045864 -64649890 + MIR SINE MIR 200 262 0 279 70 0 0 chr15 21046031 21046074 -64649680 - L1MB4 LINE L1 -2 6178 6136 * 394 218 73 0 chr15 21046072 21046182 -64649572 - L1MCa LINE L1 -4760 1666 1549 374 299 19 0 chr15 21096239 21096346 -64599408 - MIR3 SINE MIR -2 206 98 2420 76 0 0 chr15 21096361 21096651 -64599103 + AluSc SINE Alu 1 290 -19 2111 118 7 3 chr15 21097321 21097617 -64598137 - AluSx SINE Alu -15 297 1 286 103 0 0 chr15 21097674 21097713 -64598041 - U6 snRNA snRNA -66 41 3 433 257 64 0 chr15 21097716 21097825 -64597929 - L2 LINE L2 -8 3305 3190 1714 106 17 0 chr15 21098314 21098550 -64597204 - AluSg/x SINE Alu -2 308 69 1771 143 0 7 chr15 21098650 21098923 -64596831 + AluJo SINE Alu 21 291 -21 2238 102 0 7 chr15 21099061 21099354 -64596400 + AluSc SINE Alu 1 291 -18 260 207 107 107 chr15 21099549 21099670 -64596084 + L2 LINE L2 3193 3313 0 1477 140 133 33 chr15 21099781 21100052 -64595702 + AluJo SINE Alu 1 298 -14 188 135 27 0 chr15 21100323 21100360 -64595394 + CT-rich Low_complexity Low_complexity 1 38 0 329 206 16 0 chr15 21100453 21100516 -64595238 - HAL1 LINE L1 -1 2506 2443 911 204 0 12 chr15 21100516 21100721 -64595033 + AluJb SINE Alu 117 319 0 1643 211 114 69 chr15 21100729 21100845 -64594909 - HAL1 LINE L1 -76 2431 2322 1954 161 0 19 chr15 21100845 21101162 -64594592 - AluJo SINE Alu 0 312 2 1643 211 114 69 chr15 21101162 21101700 -64594054 - HAL1 LINE L1 -185 2322 1747 487 305 61 6 chr15 21101735 21101899 -64593855 - MLT1I LTR MaLR -39 370 198 1761 164 0 7 chr15 21102021 21102308 -64593446 - AluJb SINE Alu -8 304 20 2553 44 7 0 chr15 21102343 21102639 -64593115 - AluY SINE Alu -13 298 1 866 219 87 35 chr15 21102644 21102931 -64592823 - HAL1 LINE L1 -762 1745 1444 2399 86 3 0 chr15 21103875 21104176 -64591578 + AluSg SINE Alu 1 302 -8 2251 128 0 0 chr15 21104252 21104564 -64591190 + AluSx SINE Alu 1 312 0 264 75 50 0 chr15 21104892 21104932 -64590822 + L2 LINE L2 3271 3312 -1 2640 7 0 0 chr15 21104962 21105244 -64590510 + AluYb8 SINE Alu 35 316 -2 1366 181 36 4 chr15 21106107 21106356 -64589398 + AluJb SINE Alu 47 303 -9 1769 132 10 84 chr15 21106370 21106506 -64589248 + AluJb SINE Alu 3 148 -164 2074 129 3 3 chr15 21106506 21106809 -64588945 + AluSc SINE Alu 1 303 -6 1745 117 23 23 chr15 21106811 21107075 -64588679 + AluSx SINE Alu 36 299 -13 1769 132 10 84 chr15 21107075 21107245 -64588509 + AluJb SINE Alu 149 289 -23 209 326 174 57 chr15 21107343 21107659 -64588095 + L2 LINE L2 2900 3252 -20 443 239 134 67 chr15 21107822 21107980 -64587774 - L1ME4a LINE L1 -1 6120 5974 1812 162 37 3 chr15 21107980 21108276 -64587478 - AluJo SINE Alu -4 308 3 443 239 134 67 chr15 21108276 21108485 -64587269 - L1ME4a LINE L1 -147 5974 5731 2044 135 30 0 chr15 21108522 21108825 -64586929 - AluSx SINE Alu 0 312 1 2142 119 0 0 chr15 21108979 21109273 -64586481 - AluSx SINE Alu -18 294 1 267 214 18 0 chr15 21109439 21109495 -64586259 - Charlie7 DNA MER1_type -2521 91 35 405 320 156 17 chr15 21109516 21109747 -64586007 - L2 LINE L2 -453 2861 2599 2077 150 0 0 chr15 21110856 21111162 -64584592 + AluSx SINE Alu 1 306 -6 385 272 29 15 chr15 21111162 21111298 -64584456 - HAL1b LINE L1 -450 898 761 8521 97 26 25 chr15 21111306 21112567 -64583187 - HSMAR2 DNA Mariner 0 1302 41 1431 168 7 42 chr15 21112595 21112880 -64582874 - AluJo SINE Alu -17 295 21 1894 151 7 0 chr15 21112958 21113237 -64582517 - AluSx SINE Alu -21 291 11 189 0 0 0 chr15 21113242 21113263 -64582491 + (T)n Simple_repeat Simple_repeat 1 21 0 818 314 8 8 chr15 21113645 21113884 -64581870 - MIR SINE MIR -20 242 4 425 247 143 7 chr15 21113904 21114058 -64581696 + MIR SINE MIR 12 186 -76 372 257 59 10 chr15 21114061 21114162 -64581592 + HAL1 LINE L1 1 106 -2401 1633 183 21 0 chr15 21114163 21114448 -64581306 + AluJb SINE Alu 1 291 -21 717 63 31 50 chr15 21114448 21114607 -64581147 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2529 74 0 0 chr15 21114610 21114921 -64580833 + AluY SINE Alu 1 311 0 1423 233 78 13 chr15 21114927 21115309 -64580445 + HAL1 LINE L1 94 500 -2007 537 220 25 92 chr15 21115299 21115581 -64580173 + HAL1 LINE L1 846 1108 -1399 * 2391 108 0 0 chr15 21115882 21116188 -64579566 - AluSx SINE Alu -6 306 1 559 225 45 18 chr15 21116206 21116317 -64579437 - MER81 DNA DNA 0 114 1 2037 121 3 3 chr15 21116650 21116955 -64578799 - AluSx SINE Alu 0 305 1 1485 238 57 7 chr15 21117131 21117551 -64578203 - MER113 DNA MER1_type? -3 518 78 1908 133 0 18 chr15 21118044 21118322 -64577432 - AluSx SINE Alu -27 285 13 2506 81 0 0 chr15 21118645 21118953 -64576801 - AluSx SINE Alu -4 308 1 2284 113 60 28 chr15 21119530 21119883 -64575871 - THE1B LTR MaLR 0 364 1 275 196 0 0 chr15 21120115 21120161 -64575593 - L2 LINE L2 -16 3256 3211 360 340 191 10 chr15 21120636 21120845 -64574909 - MIR SINE MIR -3 259 13 777 212 190 0 chr15 21120985 21121169 -64574585 - MIR SINE MIR -26 236 18 2376 70 0 23 chr15 21121187 21121486 -64574268 - AluY SINE Alu -19 292 1 2486 73 0 0 chr15 21121831 21122133 -64573621 + AluY SINE Alu 1 302 -9 2045 125 4 0 chr15 21122144 21122450 -64573304 + AluSg SINE Alu 1 307 0 2128 110 0 27 chr15 21122614 21122915 -64572839 - AluSg SINE Alu -17 293 1 725 161 51 22 chr15 21122948 21123085 -64572669 - L1M4 LINE L1 -354 5824 5684 1583 157 64 4 chr15 21123420 21123701 -64572053 - AluSx SINE Alu -14 298 1 213 193 35 18 chr15 21124450 21124507 -64571247 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1411 132 29 0 chr15 21124513 21124717 -64571037 - AluJo SINE Alu -102 210 1 796 153 186 77 chr15 21125299 21125482 -64570272 - MER20 DNA MER1_type -16 203 1 735 197 8 8 chr15 21125484 21125616 -64570138 + FLAM_A SINE Alu 1 132 -1 2593 62 0 0 chr15 21125663 21125970 -64569784 - AluY SINE Alu 0 311 5 728 142 0 0 chr15 21126081 21126194 -64569560 + L1MB4 LINE L1 6063 6175 -5 2281 103 0 0 chr15 21126194 21126485 -64569269 - AluSg SINE Alu -19 291 1 1739 175 10 29 chr15 21126514 21126823 -64568931 + AluJo SINE Alu 1 303 -9 270 268 149 13 chr15 21127093 21127180 -64568574 - MIR3 SINE MIR -30 178 79 28508 25 0 1 chr15 21128125 21132063 -64563691 + L1PA2 LINE L1 2217 6153 -2 180 77 0 0 chr15 21132179 21132205 -64563549 + (CATGT)n Simple_repeat Simple_repeat 1 26 0 244 278 56 0 chr15 21132725 21132797 -64562957 - MIR SINE MIR -91 171 96 1869 231 82 24 chr15 21133138 21133893 -64561861 + L1ME3A LINE L1 4628 5438 -732 841 152 0 36 chr15 21133896 21134076 -64561678 + AluJo/FLAM SINE Alu 1 133 -169 1311 185 0 4 chr15 21134076 21134308 -64561446 + AluJo SINE Alu 82 312 0 1262 255 56 61 chr15 21134308 21134642 -64561112 + L1ME3A LINE L1 5429 5762 -408 2424 83 0 3 chr15 21134642 21134954 -64560800 + AluY SINE Alu 1 311 0 1262 255 56 61 chr15 21134954 21135047 -64560707 + L1ME3A LINE L1 5762 5854 -316 486 223 87 98 chr15 21135418 21135683 -64560071 + L1ME3A LINE L1 5909 6170 0 2299 97 0 7 chr15 21135935 21136235 -64559519 + AluSg SINE Alu 1 298 -12 274 257 122 14 chr15 21136363 21136511 -64559243 - L2 LINE L2 -1414 1900 1737 1407 174 7 56 chr15 21136660 21136930 -64558824 - AluJo SINE Alu -55 257 1 2324 82 23 7 chr15 21136934 21137239 -64558515 - AluSg SINE Alu 0 310 1 487 313 69 69 chr15 21137325 21137613 -64558141 + L2 LINE L2 2980 3267 -5 2102 118 10 0 chr15 21137934 21138230 -64557524 - AluSx SINE Alu -13 299 1 2374 82 0 19 chr15 21138244 21138561 -64557193 - AluY SINE Alu 0 311 1 2391 76 3 3 chr15 21138711 21139013 -64556741 + AluSg1 SINE Alu 1 302 -7 499 254 58 58 chr15 21139013 21139151 -64556603 - L1PB4 LINE L1 -4 6152 6011 1972 158 3 0 chr15 21139508 21139806 -64555948 + AluJb SINE Alu 1 299 -13 1744 163 67 0 chr15 21140165 21140435 -64555319 - AluJo SINE Alu -24 288 1 2194 105 0 7 chr15 21141144 21141438 -64554316 - AluSg1 SINE Alu -17 292 1 2085 69 0 0 chr15 21141449 21141725 -64554029 - AluY SINE Alu 0 313 38 2019 92 44 20 chr15 21141775 21142069 -64553685 - AluSg SINE Alu -9 301 1 1890 163 3 3 chr15 21142079 21142374 -64553380 - AluJb SINE Alu -17 295 1 398 215 37 47 chr15 21143024 21143131 -64552623 - MIR SINE MIR -66 196 91 45 19 0 0 chr15 21143290 21143342 -64552412 + AT_rich Low_complexity Low_complexity 1 52 0 3216 174 24 162 chr15 21143379 21143496 -64552258 + L1MD3 LINE L1 6871 7002 -993 1974 125 3 34 chr15 21143496 21143791 -64551963 + AluSx SINE Alu 1 286 -26 695 12 12 0 chr15 21143792 21143876 -64551878 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3216 174 24 162 chr15 21143876 21144047 -64551707 + L1MD3 LINE L1 7002 7195 -800 2314 104 3 0 chr15 21144047 21144354 -64551400 + AluSq SINE Alu 1 308 -5 3216 174 24 162 chr15 21144354 21144644 -64551110 + L1MD3 LINE L1 7195 7523 -472 887 173 0 0 chr15 21144644 21144777 -64550977 + FLAM_C SINE Alu 1 133 0 3216 174 24 162 chr15 21144777 21144812 -64550942 + L1MD3 LINE L1 7523 7561 -434 2442 85 0 3 chr15 21144812 21145118 -64550636 + AluSc SINE Alu 1 305 -4 3216 174 24 162 chr15 21145118 21145792 -64549962 + L1MD3 LINE L1 7561 7985 -10 2210 97 10 3 chr15 21145793 21146083 -64549671 + AluSx SINE Alu 1 292 -20 665 233 0 0 chr15 21146292 21146408 -64549346 - FLAM_A SINE Alu -17 116 1 219 229 33 0 chr15 21146488 21146549 -64549205 + (TA)n Simple_repeat Simple_repeat 2 64 0 2263 83 3 3 chr15 21147596 21147885 -64547869 + AluSq SINE Alu 1 289 -24 214 171 0 0 chr15 21147885 21147920 -64547834 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 259 284 0 0 chr15 21147920 21148008 -64547746 - L1MC4 LINE L1 -1339 6703 6616 20739 43 52 3 chr15 21148092 21150681 -64545073 + L1P LINE L1 13 2728 -3418 515 153 0 0 chr15 21150790 21150875 -64544879 - MIR SINE MIR -67 195 111 862 183 0 0 chr15 21150876 21151007 -64544747 + FLAM_C SINE Alu 3 133 0 2069 127 0 0 chr15 21151020 21151303 -64544451 - AluSx SINE Alu -27 285 3 22 35 0 0 chr15 21151306 21151335 -64544419 + AT_rich Low_complexity Low_complexity 1 29 0 391 216 226 0 chr15 21151339 21151441 -64544313 - MIR SINE MIR -136 126 2 2085 122 0 3 chr15 21151614 21151920 -64543834 - AluSq SINE Alu 0 305 1 471 135 144 0 chr15 21153163 21153267 -64542487 + L1MA8 LINE L1 6163 6281 -10 656 154 18 9 chr15 21153300 21153410 -64542344 - FLAM_A SINE Alu -12 130 20 606 115 0 0 chr15 21153986 21154064 -64541690 + AluSp/q SINE Alu 216 293 -20 213 39 0 0 chr15 21154064 21154090 -64541664 + (TA)n Simple_repeat Simple_repeat 2 27 0 511 298 42 6 chr15 21154749 21154811 -64540943 + MER5B DNA MER1_type 1 59 -119 216 0 0 0 chr15 21154811 21154835 -64540919 + (TA)n Simple_repeat Simple_repeat 2 25 0 511 298 42 6 chr15 21154835 21154940 -64540814 + MER5B DNA MER1_type 59 174 -4 522 106 150 9 chr15 21154982 21155095 -64540659 - MER106A DNA MER1_type 0 236 108 583 207 9 26 chr15 21155142 21155258 -64540496 - AluJo SINE Alu -105 207 94 21 36 0 0 chr15 21155286 21155314 -64540440 + AT_rich Low_complexity Low_complexity 1 28 0 2297 82 3 36 chr15 21155314 21155620 -64540134 + AluSq SINE Alu 1 296 -17 1108 260 60 27 chr15 21155677 21155977 -64539777 - MLT1I LTR MaLR -21 388 79 2136 78 3 27 chr15 21156240 21156536 -64539218 + AluY SINE Alu 5 293 -18 2439 65 0 0 chr15 21157032 21157326 -64538428 + AluY SINE Alu 1 294 -17 2434 90 0 0 chr15 21158673 21158984 -64536770 - AluSq SINE Alu -2 311 1 21 0 0 0 chr15 21159080 21159101 -64536653 + AT_rich Low_complexity Low_complexity 1 21 0 201 318 182 0 chr15 21159176 21159264 -64536490 + MIR3 SINE MIR 59 162 -46 897 204 11 17 chr15 21159421 21159597 -64536157 + MER5B DNA MER1_type 4 178 0 1994 150 0 16 chr15 21159830 21160143 -64535611 + AluSq SINE Alu 1 308 -5 307 197 84 0 chr15 21160504 21160575 -64535179 - MIR SINE MIR -67 195 119 315 0 0 0 chr15 21160661 21160696 -64535058 + (TG)n Simple_repeat Simple_repeat 1 35 0 2216 118 0 10 chr15 21160774 21161079 -64534675 - AluSq SINE Alu -11 302 1 1038 85 0 0 chr15 21161594 21161724 -64534030 + AluSg/x SINE Alu 163 292 -18 2256 103 0 13 chr15 21161737 21161873 -64533881 + AluSx SINE Alu 1 137 -175 2061 102 27 7 chr15 21161873 21162168 -64533586 + AluSp SINE Alu 1 301 -12 2256 103 0 13 chr15 21162168 21162333 -64533421 + AluSx SINE Alu 137 298 -14 217 256 0 0 chr15 21162472 21162511 -64533243 + L2 LINE L2 2582 2620 -694 889 105 0 0 chr15 21162597 21162721 -64533033 - AluSg/x SINE Alu -4 306 183 654 106 21 0 chr15 21162725 21162819 -64532935 - AluSc SINE Alu -212 97 2 345 365 42 69 chr15 21162828 21163125 -64532629 + L2 LINE L2 2697 2981 -291 1703 167 0 46 chr15 21163125 21163460 -64532294 - AluJb SINE Alu 0 312 1 345 365 42 69 chr15 21163460 21163648 -64532106 + L2 LINE L2 2981 3172 -100 184 306 41 0 chr15 21163708 21163757 -64531997 - L2 LINE L2 -93 3179 3129 1102 208 0 0 chr15 21164472 21164645 -64531109 - FAM SINE Alu -2 173 1 7588 51 5 3 chr15 21164742 21166267 -64529487 + L1PA6 LINE L1 4627 6152 -2 2154 213 63 27 chr15 21166471 21166986 -64528768 - HsTC2c DNA Tc2 -1259 639 103 1508 76 0 0 chr15 21166986 21167170 -64528584 + AluSq SINE Alu 5 188 -125 285 130 0 0 chr15 21167170 21167216 -64528538 + AluSq SINE Alu 255 300 -1 3507 202 21 70 chr15 21167321 21168340 -64527414 + LTR5 LTR ERVK 1 969 0 964 182 0 17 chr15 21168566 21168742 -64527012 + AluJb SINE Alu 136 308 -4 21 0 0 0 chr15 21168937 21168958 -64526796 + AT_rich Low_complexity Low_complexity 1 21 0 1272 189 7 33 chr15 21168964 21169265 -64526489 + AluJo SINE Alu 1 293 -19 1624 178 0 14 chr15 21170402 21170677 -64525077 + AluJo SINE Alu 11 281 -31 2430 37 0 37 chr15 21170677 21170970 -64524784 - AluY SINE Alu -12 299 17 198 0 0 0 chr15 21170985 21171007 -64524747 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 95 3 3 chr15 21171007 21171311 -64524443 + AluSp SINE Alu 1 304 -9 1039 191 10 21 chr15 21171332 21171526 -64524228 + AluJb SINE Alu 112 303 -9 1930 148 0 19 chr15 21171775 21172093 -64523661 - AluSx SINE Alu 0 312 1 28 91 0 0 chr15 21172856 21172933 -64522821 + AT_rich Low_complexity Low_complexity 1 77 0 2181 117 0 10 chr15 21173051 21173350 -64522404 + AluSx SINE Alu 1 296 -16 21 57 0 0 chr15 21173381 21173416 -64522338 + AT_rich Low_complexity Low_complexity 1 35 0 2351 75 3 0 chr15 21173713 21174008 -64521746 - AluY SINE Alu -15 296 1 2411 78 3 0 chr15 21174495 21174791 -64520963 - AluY SINE Alu -14 297 1 25 0 0 0 chr15 21175176 21175201 -64520553 + AT_rich Low_complexity Low_complexity 1 25 0 1029 236 82 0 chr15 21175237 21175470 -64520284 + MER58 DNA MER1_type 2 253 -88 1145 131 98 95 chr15 21175470 21175526 -64520228 + L1MD3 LINE L1 7690 7744 -251 1973 125 3 22 chr15 21175526 21175837 -64519917 + AluSg SINE Alu 1 305 -5 1145 131 98 95 chr15 21175837 21176085 -64519669 + L1MD3 LINE L1 7744 7995 0 22 0 0 0 chr15 21176138 21176160 -64519594 + AT_rich Low_complexity Low_complexity 1 22 0 242 325 0 13 chr15 21176510 21176587 -64519167 + MIR SINE MIR 28 103 -159 2380 99 0 0 chr15 21176587 21176889 -64518865 - AluSg SINE Alu -8 302 1 2164 96 7 3 chr15 21176902 21177193 -64518561 - AluY SINE Alu -19 292 1 270 287 11 11 chr15 21177376 21177463 -64518291 - AluY SINE Alu -201 100 14 2508 72 0 0 chr15 21177691 21177997 -64517757 + AluY SINE Alu 1 306 -5 180 0 0 0 chr15 21180391 21180411 -64515343 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2045 123 3 10 chr15 21180411 21180694 -64515060 - AluSx SINE Alu -29 283 1 1629 162 46 39 chr15 21180705 21180864 -64514890 - AluJb SINE Alu -26 286 123 1935 175 0 6 chr15 21180864 21181178 -64514576 - AluJb SINE Alu 0 312 1 1629 162 46 39 chr15 21181178 21181302 -64514452 - AluJb SINE Alu -189 123 1 1402 193 58 0 chr15 21181339 21181614 -64514140 - AluJo SINE Alu -21 291 1 1125 210 16 0 chr15 21181620 21181806 -64513948 + MER5A DNA MER1_type 1 189 0 2486 88 0 0 chr15 21182129 21182435 -64513319 - AluY SINE Alu -4 307 2 2298 79 7 13 chr15 21182748 21183052 -64512702 - AluSg1 SINE Alu -7 302 1 1898 146 3 37 chr15 21183300 21183623 -64512131 - AluJo SINE Alu 0 312 1 236 239 0 45 chr15 21183815 21183882 -64511872 + L2 LINE L2 3201 3264 -8 615 255 193 9 chr15 21183896 21184108 -64511646 + MIR SINE MIR 12 262 0 2007 104 54 0 chr15 21184108 21184388 -64511366 + AluSq SINE Alu 1 295 -18 2294 109 7 0 chr15 21184600 21184903 -64510851 + AluSx SINE Alu 1 305 -7 1857 144 3 30 chr15 21185025 21185330 -64510424 + AluJb SINE Alu 1 297 -15 240 111 0 0 chr15 21185332 21185368 -64510386 + (TA)n Simple_repeat Simple_repeat 1 36 0 899 214 0 0 chr15 21185636 21185804 -64509950 - FRAM SINE Alu -1 175 8 24 0 0 0 chr15 21185813 21185837 -64509917 + AT_rich Low_complexity Low_complexity 1 24 0 2191 61 0 103 chr15 21185837 21186167 -64509587 - AluY SINE Alu -15 296 1 1292 98 0 0 chr15 21186169 21186333 -64509421 - AluSq SINE Alu -16 297 134 1988 85 53 11 chr15 21186333 21186616 -64509138 - AluY SINE Alu -16 295 1 191 62 62 0 chr15 21186889 21186921 -64508833 + T-rich Low_complexity Low_complexity 3 36 0 216 0 0 0 chr15 21186955 21186979 -64508775 + (TG)n Simple_repeat Simple_repeat 1 24 0 2165 104 0 4 chr15 21186979 21187259 -64508495 - AluSx SINE Alu -33 279 1 617 250 17 40 chr15 21187323 21187499 -64508255 - MER5B DNA MER1_type 0 178 7 1046 217 9 24 chr15 21187527 21187739 -64508015 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr15 21187872 21187900 -64507854 + AT_rich Low_complexity Low_complexity 1 28 0 1716 173 25 3 chr15 21187904 21188188 -64507566 + AluJo SINE Alu 1 290 -22 198 0 0 0 chr15 21188188 21188210 -64507544 + (GA)n Simple_repeat Simple_repeat 2 23 0 8656 181 66 15 chr15 21188210 21189821 -64505933 + L1MA3 LINE L1 17 1710 -5855 1042 168 0 0 chr15 21189821 21189976 -64505778 + AluJb SINE Alu 147 301 -11 15462 154 21 57 chr15 21189976 21190034 -64505720 + L1MA3 LINE L1 3627 3686 -4038 2525 60 3 0 chr15 21190034 21190333 -64505421 + AluSp SINE Alu 1 300 -13 15462 154 21 57 chr15 21190333 21192351 -64503403 + L1MA3 LINE L1 3686 5775 -1949 2466 76 0 3 chr15 21192351 21192655 -64503099 + AluY SINE Alu 1 303 -8 15462 154 21 57 chr15 21192655 21193686 -64502068 + L1MA3 LINE L1 5775 6540 -1184 2282 105 20 0 chr15 21193686 21193991 -64501763 + AluSq SINE Alu 1 311 -2 15462 154 21 57 chr15 21193991 21195134 -64500620 + L1MA3 LINE L1 6540 7723 -1 413 180 22 11 chr15 21195199 21195288 -64500466 + L1MC1 LINE L1 2639 2728 -3418 1768 30 0 0 chr15 21195292 21195546 -64500208 + L1PA4 LINE L1 5929 6182 0 237 259 12 0 chr15 21195580 21195661 -64500093 + L1MC1 LINE L1 2752 2833 -3313 9393 223 28 27 chr15 21196971 21197945 -64497809 + L1MC1 LINE L1 2821 3793 -2353 1653 160 32 55 chr15 21197945 21198257 -64497497 + AluJo SINE Alu 1 305 -7 9393 223 28 27 chr15 21198257 21199129 -64496625 + L1MC1 LINE L1 3793 4663 -1483 2125 130 3 0 chr15 21199129 21199430 -64496324 + AluSx SINE Alu 2 303 -9 9393 223 28 27 chr15 21199430 21199931 -64495823 + L1MC1 LINE L1 4663 5173 -973 2249 79 23 3 chr15 21199931 21200234 -64495520 + AluY SINE Alu 1 309 -2 9393 223 28 27 chr15 21200234 21200358 -64495396 + L1MC1 LINE L1 5173 5295 -851 2325 74 0 3 chr15 21200362 21200677 -64495077 + AluY SINE Alu 1 314 0 32539 27 3 0 chr15 21200677 21205264 -64490490 + L1PA3 LINE L1 1556 6155 0 5593 149 39 33 chr15 21205261 21205298 -64490456 + L1MC1 LINE L1 5264 5299 -1034 * 1854 141 0 40 chr15 21205298 21205602 -64490152 + AluSx SINE Alu 1 292 -20 981 207 0 0 chr15 21205607 21205771 -64489983 + FRAM SINE Alu 3 166 0 5593 149 39 33 chr15 21205771 21206301 -64489453 + L1MC1 LINE L1 5302 5850 -483 1636 194 27 13 chr15 21206301 21206600 -64489154 + AluJb SINE Alu 1 303 -9 5593 149 39 33 chr15 21206600 21207067 -64488687 + L1MC1 LINE L1 5850 6312 -21 2577 58 0 0 chr15 21207072 21207380 -64488374 + AluY SINE Alu 1 308 -3 1670 158 37 7 chr15 21207429 21207701 -64488053 + AluJo SINE Alu 14 293 -19 828 241 12 6 chr15 21207772 21207934 -64487820 + FRAM SINE Alu 1 163 -13 27 0 0 0 chr15 21208063 21208090 -64487664 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 118 0 chr15 21208132 21208322 -64487432 + MER58A DNA MER1_type 42 224 0 1731 250 46 78 chr15 21208344 21208570 -64487184 - L1MEc LINE L1 -4621 2204 1972 2211 92 14 3 chr15 21208570 21208862 -64486892 + AluSc SINE Alu 1 295 -14 1731 250 46 78 chr15 21208862 21209192 -64486562 - L1MEc LINE L1 -4853 1972 1633 1521 136 0 56 chr15 21209192 21209464 -64486290 - AluSx SINE Alu 0 302 45 1731 250 46 78 chr15 21209464 21209949 -64485805 - L1MEc LINE L1 -5192 1633 1057 257 88 0 0 chr15 21210065 21210099 -64485655 - MLT2A2 LTR ERVL -7 446 413 483 27 27 14 chr15 21210100 21210174 -64485580 + (TA)n Simple_repeat Simple_repeat 2 76 0 312 137 0 0 chr15 21210241 21210292 -64485462 + (TG)n Simple_repeat Simple_repeat 2 52 0 225 207 0 17 chr15 21210293 21210351 -64485403 + L1MC4 LINE L1 6667 6723 -1319 734 181 105 59 chr15 21210361 21210599 -64485155 + L2 LINE L2 3022 3270 -43 688 101 0 0 chr15 21210599 21210688 -64485066 + AluSg1 SINE Alu 2 90 -219 231 105 88 53 chr15 21210698 21210755 -64484999 - L1MCa LINE L1 -4362 2064 2006 225 0 0 0 chr15 21210755 21210780 -64484974 + (CA)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr15 21210780 21210814 -64484940 - MLT2A1 LTR ERVL -44 400 367 236 196 0 0 chr15 21210817 21210863 -64484891 + Alu SINE Alu 251 296 -4 2789 91 22 25 chr15 21210922 21211329 -64484425 - MLT2A1 LTR ERVL -38 406 1 821 221 0 0 chr15 21211468 21211613 -64484141 + FRAM SINE Alu 1 140 -36 1285 206 8 4 chr15 21211768 21212016 -64483738 - AluJo SINE Alu -63 249 1 250 279 44 95 chr15 21212108 21212266 -64483488 - L1MEc LINE L1 -5969 856 707 331 331 26 7 chr15 21212269 21212423 -64483331 - L1MEc LINE L1 -6203 622 466 500 293 54 78 chr15 21212963 21213205 -64482549 - MIR SINE MIR -8 254 19 260 289 289 8 chr15 21213217 21213345 -64482409 - MER5B DNA MER1_type -14 164 1 1015 215 198 38 chr15 21213832 21214232 -64481522 + L2 LINE L2 2809 3272 -41 2616 24 0 0 chr15 21214232 21214523 -64481231 + AluY SINE Alu 1 291 -20 2246 118 0 0 chr15 21214530 21214835 -64480919 + AluSg SINE Alu 1 305 -5 2095 134 0 0 chr15 21214875 21215188 -64480566 + AluSx SINE Alu 1 313 0 248 146 0 0 chr15 21215382 21215423 -64480331 - MSTA LTR MaLR 0 428 388 871 154 0 0 chr15 21215423 21215540 -64480214 + FLAM_C SINE Alu 1 117 -16 2355 103 92 8 chr15 21215568 21215938 -64479816 - MSTA LTR MaLR -27 401 1 2106 112 0 11 chr15 21216061 21216375 -64479379 - AluSg SINE Alu 0 311 1 1605 171 20 30 chr15 21216551 21216850 -64478904 + AluJo SINE Alu 1 296 -16 2271 67 14 3 chr15 21217011 21217317 -64478437 + AluSp SINE Alu 1 309 0 1350 189 102 4 chr15 21217336 21217600 -64478154 - AluJo SINE Alu -18 294 5 23 0 0 0 chr15 21217829 21217852 -64477902 + AT_rich Low_complexity Low_complexity 1 23 0 1816 187 3 0 chr15 21218147 21218447 -64477307 + AluJo SINE Alu 1 301 -11 1583 170 0 11 chr15 21218459 21218730 -64477024 - AluSx SINE Alu -44 268 1 344 267 131 29 chr15 21218857 21219063 -64476691 + L1ME4a LINE L1 5874 6100 -21 2193 73 0 25 chr15 21219070 21219409 -64476345 - AluY SINE Alu 0 334 3 1572 114 0 9 chr15 21219411 21219631 -64476123 - AluSq SINE Alu -11 302 85 2137 125 14 3 chr15 21219804 21220101 -64475653 - AluSg SINE Alu -10 300 1 445 252 61 0 chr15 21220104 21220219 -64475535 - L2 LINE L2 -1 3312 3191 1963 123 0 23 chr15 21220251 21220551 -64475203 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr15 21220675 21220695 -64475059 + (T)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr15 21221808 21221844 -64473910 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 21222674 21222700 -64473054 + AT_rich Low_complexity Low_complexity 1 26 0 959 107 0 8 chr15 21222878 21223009 -64472745 - FLAM_C SINE Alu -3 130 1 2148 103 0 67 chr15 21223353 21223683 -64472071 - AluSx SINE Alu -4 308 1 1196 110 12 0 chr15 21223837 21224000 -64471754 + AluSg/x SINE Alu 141 305 -7 249 149 45 0 chr15 21224149 21224216 -64471538 + (TA)n Simple_repeat Simple_repeat 2 71 0 255 307 78 45 chr15 21224359 21224538 -64471216 - L1ME LINE L1 -463 5658 5474 1766 190 0 13 chr15 21224720 21225036 -64470718 - AluJo SINE Alu 0 312 1 25 0 0 0 chr15 21225134 21225159 -64470595 + AT_rich Low_complexity Low_complexity 1 25 0 4694 170 40 75 chr15 21225174 21225387 -64470367 - L1MB5 LINE L1 -28 6146 5927 2253 103 0 13 chr15 21225387 21225521 -64470233 + AluSc SINE Alu 1 135 -174 2490 58 0 3 chr15 21225521 21225816 -64469938 + AluY SINE Alu 1 294 -17 2253 103 0 13 chr15 21225816 21225981 -64469773 + AluSc SINE Alu 135 296 -13 4694 170 40 75 chr15 21225981 21226616 -64469138 - L1MB5 LINE L1 -247 5927 5271 1618 177 0 40 chr15 21226616 21226915 -64468839 - AluJo SINE Alu -25 287 1 4694 170 40 75 chr15 21226915 21227645 -64468109 - L1MB5 LINE L1 -903 5271 4517 1823 176 3 7 chr15 21227645 21227947 -64467807 + AluJo SINE Alu 1 301 -11 1955 147 0 26 chr15 21227949 21228261 -64467493 + AluJb SINE Alu 1 304 -8 4694 170 40 75 chr15 21228261 21228537 -64467217 - L1MB5 LINE L1 -1658 4516 4331 2087 133 7 0 chr15 21228537 21228838 -64466916 + AluSx SINE Alu 1 303 -9 4694 170 40 75 chr15 21228838 21228881 -64466873 - L1MB5 LINE L1 -1843 4331 4288 806 118 0 0 chr15 21229026 21229136 -64466618 - AluSg/x SINE Alu -13 297 188 1610 104 9 0 chr15 21229138 21229349 -64466405 + AluSg/x SINE Alu 89 301 -11 21 36 0 0 chr15 21229413 21229441 -64466313 + AT_rich Low_complexity Low_complexity 1 28 0 1982 140 7 0 chr15 21229450 21229742 -64466012 + AluJb SINE Alu 1 294 -18 657 204 9 9 chr15 21229753 21229866 -64465888 - FLAM_A SINE Alu -17 116 4 2419 68 0 7 chr15 21229878 21230173 -64465581 - AluY SINE Alu -18 293 1 1824 157 7 0 chr15 21230304 21230614 -64465140 + AluSx SINE Alu 1 312 0 1872 162 10 3 chr15 21230734 21231036 -64464718 - AluJb SINE Alu -8 304 1 2417 76 3 13 chr15 21231622 21231925 -64463829 - AluSp SINE Alu -13 300 1 728 193 41 7 chr15 21231925 21232070 -64463684 - MSTC LTR MaLR -215 150 1 541 252 34 68 chr15 21232233 21232289 -64463465 + L1M4 LINE L1 3182 3238 -2908 2473 63 0 10 chr15 21232289 21232590 -64463164 + AluY SINE Alu 1 298 -13 541 252 34 68 chr15 21232590 21232855 -64462899 + L1M4 LINE L1 3238 3492 -2654 1016 151 5 16 chr15 21232896 21233107 -64462647 - AluSp SINE Alu 0 311 103 2111 58 4 0 chr15 21233679 21233936 -64461818 + AluY SINE Alu 1 258 -53 29 0 0 0 chr15 21234467 21234496 -64461258 + GC_rich Low_complexity Low_complexity 1 29 0 1348 114 5 30 chr15 21234782 21234846 -64460908 - AluSp SINE Alu -116 197 133 2403 69 0 16 chr15 21234846 21235151 -64460603 - AluY SINE Alu -11 300 1 1348 114 5 30 chr15 21235151 21235288 -64460466 - AluSp SINE Alu -180 133 1 857 218 6 6 chr15 21235295 21235465 -64460289 - FAM SINE Alu -15 170 1 2280 98 3 0 chr15 21235487 21235782 -64459972 - AluSc SINE Alu -13 296 1 2380 77 3 3 chr15 21235855 21236152 -64459602 - AluSq SINE Alu -16 297 1 1820 171 0 3 chr15 21236220 21236513 -64459241 - AluJo SINE Alu -20 292 1 1705 192 0 7 chr15 21236514 21236806 -64458948 - AluJo SINE Alu -22 290 1 354 212 152 0 chr15 21236974 21237073 -64458681 - MIR SINE MIR -9 253 140 2386 84 7 0 chr15 21237300 21237599 -64458155 - AluSc SINE Alu -8 301 1 283 111 0 0 chr15 21237600 21237645 -64458109 - AluJo SINE Alu -7 295 251 1166 168 20 5 chr15 21237645 21237841 -64457913 - AluJo SINE Alu -113 199 1 410 244 63 24 chr15 21237926 21238053 -64457701 + MLT1J LTR MaLR 377 508 -3 348 244 110 39 chr15 21238056 21238183 -64457571 - MIR SINE MIR -119 143 8 704 175 76 29 chr15 21238244 21238415 -64457339 - LTR16A LTR ERVL -256 194 16 272 318 28 9 chr15 21238444 21238551 -64457203 - MER117 DNA MER1_type -32 165 57 2185 120 0 0 chr15 21238554 21238855 -64456899 - AluSg SINE Alu -9 301 1 1138 227 25 43 chr15 21238901 21239179 -64456575 + LTR16A LTR ERVL 178 450 0 560 271 78 92 chr15 21239334 21239701 -64456053 + MLT1K LTR MaLR 154 516 -72 2348 94 7 0 chr15 21239701 21239999 -64455755 - AluSg SINE Alu -10 300 1 560 271 78 92 chr15 21239999 21240067 -64455687 + MLT1K LTR MaLR 516 583 -5 2318 109 0 0 chr15 21240297 21240601 -64455153 - AluSc SINE Alu -5 304 1 1767 145 13 35 chr15 21240747 21241064 -64454690 + AluJb SINE Alu 1 310 -2 3078 126 84 0 chr15 21241162 21241662 -64454092 - L1MC3 LINE L1 0 7785 7244 2859 13 0 0 chr15 21241801 21242112 -64453642 + AluY SINE Alu 1 311 0 239 167 347 0 chr15 21242157 21242229 -64453525 + MIR SINE MIR 65 161 -101 1074 138 0 0 chr15 21242371 21242531 -64453223 - AluSg/x SINE Alu -16 294 135 218 245 0 0 chr15 21243203 21243252 -64452502 + MIR SINE MIR 93 141 -121 1194 45 0 0 chr15 21243891 21244048 -64451706 + (GA)n Simple_repeat Simple_repeat 1 157 0 2263 87 3 7 chr15 21245956 21246276 -64449478 - AluSp SINE Alu 0 319 1 1057 166 41 6 chr15 21246282 21246451 -64449303 - FAM SINE Alu 0 175 1 204 330 140 52 chr15 21246544 21246944 -64448810 + L2 LINE L2 1725 2159 -1155 435 266 26 0 chr15 21247057 21247170 -64448584 - MER103 DNA DNA -43 123 8 231 114 0 0 chr15 21247341 21247376 -64448378 + (TA)n Simple_repeat Simple_repeat 1 35 0 2346 82 3 0 chr15 21247376 21247669 -64448085 - AluY SINE Alu -17 294 1 676 192 23 15 chr15 21247694 21247824 -64447930 - FLAM_C SINE Alu 0 133 3 1748 164 30 7 chr15 21247976 21248281 -64447473 - AluJo SINE Alu 0 312 1 342 169 136 0 chr15 21248336 21248395 -64447359 - AluJ/FLAM SINE Alu -235 67 1 3825 134 108 143 chr15 21248399 21248969 -64446785 - L1MC3 LINE L1 -27 7758 7169 230 296 57 0 chr15 21248969 21249057 -64446697 - MLT1F1 LTR MaLR -442 125 33 3825 134 108 143 chr15 21249057 21249469 -64446285 - L1MC3 LINE L1 -616 7169 6727 1791 112 34 99 chr15 21249469 21249606 -64446148 + AluSx SINE Alu 1 145 -167 2333 84 7 7 chr15 21249606 21249903 -64445851 + AluSg SINE Alu 1 297 -13 1791 112 34 99 chr15 21249903 21250087 -64445667 + AluSx SINE Alu 145 301 -11 3825 134 108 143 chr15 21250087 21250122 -64445632 - L1MC3 LINE L1 -1058 6727 6692 2095 131 3 0 chr15 21250255 21250553 -64445201 - AluSx SINE Alu -13 299 1 2111 161 58 26 chr15 21250695 21251073 -64444681 - MLT1B LTR MaLR 0 390 1 333 47 0 0 chr15 21251085 21251128 -64444626 + (CA)n Simple_repeat Simple_repeat 1 43 0 981 225 0 17 chr15 21251219 21251392 -64444362 - FAM SINE Alu -5 170 1 201 74 0 0 chr15 21251523 21251550 -64444204 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 256 134 12 chr15 21251716 21251798 -64443956 + MIR SINE MIR 143 234 -28 2367 73 0 32 chr15 21252727 21253043 -64442711 - AluY SINE Alu -5 306 1 2346 96 0 10 chr15 21253043 21253344 -64442410 - AluSg SINE Alu -12 298 1 2319 102 0 37 chr15 21253427 21253751 -64442003 - AluSq SINE Alu -1 312 1 1596 175 72 103 chr15 21253947 21254422 -64441332 + MLT1C LTR MaLR 8 467 0 2099 90 0 0 chr15 21254468 21254734 -64441020 - AluSx SINE Alu -12 300 35 243 267 199 80 chr15 21254768 21254944 -64440810 + MIR3 SINE MIR 2 198 -10 1524 214 23 0 chr15 21254999 21255303 -64440451 + AluJo SINE Alu 1 311 -1 494 188 15 15 chr15 21255320 21255453 -64440301 + GA-rich Low_complexity Low_complexity 1 133 0 688 159 0 9 chr15 21256321 21256428 -64439326 - FRAM SINE Alu -77 99 1 224 184 46 83 chr15 21256431 21256540 -64439214 + L2 LINE L2 1945 2049 -1265 216 358 22 60 chr15 21256597 21256731 -64439023 - L2 LINE L2 0 3272 3144 1019 146 0 7 chr15 21256937 21257128 -64438626 + AluSg/x SINE Alu 133 322 0 1711 166 6 45 chr15 21257550 21257718 -64438036 - AluJo SINE Alu -11 301 149 2060 131 24 0 chr15 21257718 21258015 -64437739 - AluSx SINE Alu -8 304 1 1711 166 6 45 chr15 21258015 21258159 -64437595 - AluJo SINE Alu -163 149 1 9962 115 64 78 chr15 21258161 21258216 -64437538 - Tigger1 DNA MER2_type -628 1790 1736 2417 100 3 0 chr15 21258216 21258527 -64437227 - AluSq SINE Alu -1 312 1 9962 115 64 78 chr15 21258527 21258567 -64437187 - Tigger1 DNA MER2_type -682 1736 1697 1517 183 11 11 chr15 21258567 21258840 -64436914 - AluJo SINE Alu -39 273 1 9962 115 64 78 chr15 21258840 21258995 -64436759 - Tigger1 DNA MER2_type -721 1697 1541 1689 162 39 7 chr15 21258995 21259279 -64436475 - AluJb SINE Alu -19 293 1 9962 115 64 78 chr15 21259279 21259293 -64436461 - Tigger1 DNA MER2_type -877 1541 1528 1826 162 7 0 chr15 21259293 21259583 -64436171 - AluJb SINE Alu -20 292 1 9962 115 64 78 chr15 21259583 21261130 -64434624 - Tigger1 DNA MER2_type -890 1528 1 2412 89 0 0 chr15 21261195 21261497 -64434257 - AluY SINE Alu -9 302 1 3359 140 35 12 chr15 21262027 21262600 -64433154 - L1MB4 LINE L1 -2 6178 5593 771 203 43 0 chr15 21262600 21262738 -64433016 - AluJb SINE Alu -24 288 145 2452 135 30 17 chr15 21262738 21263282 -64432472 + L1MA9 LINE L1 5107 5658 -633 593 133 23 10 chr15 21263282 21263453 -64432301 + L1MA9 LINE L1 5974 6302 -10 717 297 72 14 chr15 21263633 21263855 -64431899 - MIR SINE MIR 0 262 28 2065 140 0 0 chr15 21263877 21264169 -64431585 - AluSx SINE Alu -20 292 1 1100 147 82 82 chr15 21264348 21264416 -64431338 + AluJo SINE Alu 40 107 -205 204 40 0 0 chr15 21264416 21264441 -64431313 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 303 28 0 0 chr15 21264440 21264476 -64431278 + (TA)n Simple_repeat Simple_repeat 1 36 0 1100 147 82 82 chr15 21264441 21264475 -64431279 + AluJo SINE Alu 107 140 -172 315 49 0 0 chr15 21264475 21264516 -64431238 + (CA)n Simple_repeat Simple_repeat 2 42 0 1100 147 82 82 chr15 21264516 21264692 -64431062 + AluJo SINE Alu 139 284 -28 2299 103 0 0 chr15 21264722 21265022 -64430732 + AluSg SINE Alu 1 300 -10 250 278 78 11 chr15 21265496 21265586 -64430168 - MLT1I LTR MaLR -311 98 3 2167 98 0 0 chr15 21265655 21265930 -64429824 - AluSx SINE Alu -32 280 6 558 324 159 22 chr15 21266048 21266637 -64429117 + L2 LINE L2 925 1673 -1641 2142 96 3 23 chr15 21266649 21266784 -64428970 + AluSq SINE Alu 1 137 -176 2287 96 3 3 chr15 21266784 21267085 -64428669 + AluSg SINE Alu 1 301 -9 2142 96 3 23 chr15 21267085 21267250 -64428504 + AluSq SINE Alu 137 295 -18 229 343 121 0 chr15 21267380 21267587 -64428167 + L2 LINE L2 2037 2268 -1046 281 278 14 0 chr15 21267589 21267661 -64428093 + L2 LINE L2 3188 3260 -12 229 247 55 41 chr15 21267738 21267811 -64427943 + L2 LINE L2 3197 3270 -2 2550 78 0 0 chr15 21267941 21268250 -64427504 + AluY SINE Alu 1 309 -2 2343 104 0 0 chr15 21268262 21268561 -64427193 + AluSq SINE Alu 1 299 -14 613 221 0 21 chr15 21268815 21268960 -64426794 + MIR SINE MIR 121 262 0 466 260 120 7 chr15 21269013 21269163 -64426591 + MER5B DNA MER1_type 2 168 -10 409 136 0 0 chr15 21270273 21270332 -64425422 + FLAM_A SINE Alu 74 132 -10 2355 76 0 3 chr15 21270459 21270761 -64424993 + AluSg SINE Alu 1 301 -9 1042 199 0 5 chr15 21270769 21270960 -64424794 + AluJb SINE Alu 82 271 -41 1142 180 0 6 chr15 21271186 21271369 -64424385 + AluJb SINE Alu 108 289 -23 498 329 110 48 chr15 21271597 21271907 -64423847 + L2 LINE L2 2175 2503 -811 1392 172 132 17 chr15 21271992 21272288 -64423466 - MER58B DNA MER1_type -11 330 1 389 323 82 65 chr15 21272294 21272411 -64423343 + L2 LINE L2 2592 2706 -566 2053 146 0 3 chr15 21272411 21272712 -64423042 + AluSx SINE Alu 1 300 -12 389 323 82 65 chr15 21272712 21273203 -64422551 + L2 LINE L2 2706 3207 -65 1651 179 10 30 chr15 21273204 21273505 -64422249 - AluJo SINE Alu -17 295 1 1807 176 0 7 chr15 21273568 21273874 -64421880 - AluJb SINE Alu -8 304 1 1865 181 0 36 chr15 21273900 21274287 -64421467 - L1MB7 LINE L1 -19 6165 5793 1660 162 23 43 chr15 21274288 21274590 -64421164 - AluJo SINE Alu -16 296 1 246 402 60 21 chr15 21274783 21275017 -64420737 + L2 LINE L2 2815 3057 -215 1799 159 14 0 chr15 21275175 21275470 -64420284 + AluJo SINE Alu 1 299 -13 721 203 10 45 chr15 21275482 21275757 -64419997 + L1MD2 LINE L1 6034 6349 -10 1625 180 20 27 chr15 21275757 21276051 -64419703 + AluJb SINE Alu 1 292 -20 2112 113 3 0 chr15 21276071 21276362 -64419392 + AluSx SINE Alu 1 292 -20 181 87 22 43 chr15 21277451 21277497 -64418257 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 21278414 21278442 -64417312 + AT_rich Low_complexity Low_complexity 1 28 0 1286 69 6 0 chr15 21279005 21279165 -64416589 - L1PA12 LINE L1 0 6168 6008 2409 88 0 7 chr15 21279967 21280274 -64415480 + AluSg SINE Alu 1 305 -5 2096 108 27 0 chr15 21280998 21281294 -64414460 - AluSp SINE Alu -9 304 1 2794 255 76 34 chr15 21281296 21281485 -64414269 + L1M4 LINE L1 3543 3723 -2423 2290 91 7 3 chr15 21281485 21281783 -64413971 + AluSx SINE Alu 1 299 -13 2794 255 76 34 chr15 21281783 21282754 -64413000 + L1M4 LINE L1 3723 4752 -1394 594 172 0 0 chr15 21282755 21282869 -64412885 - AluSg/x SINE Alu 0 310 197 2055 112 0 4 chr15 21282869 21283137 -64412617 - AluSx SINE Alu -45 267 1 512 202 11 0 chr15 21283137 21283231 -64412523 - MER2 DNA MER2_type -247 98 4 704 150 21 144 chr15 21283242 21283429 -64412325 - MER77 LTR ERV1 -410 195 32 557 179 19 19 chr15 21283434 21283540 -64412214 - Tigger3(Golem) DNA MER2_type -6 3023 2918 2101 71 41 37 chr15 21284158 21284452 -64411302 - AluY SINE Alu -16 295 1 1057 126 27 126 chr15 21284647 21284704 -64411050 - LTR49-int LTR ERV1 -3200 3131 3070 2212 104 0 0 chr15 21284704 21285008 -64410746 + AluSc SINE Alu 1 280 -29 1057 126 27 126 chr15 21285008 21285217 -64410537 - LTR49-int LTR ERV1 -3261 3070 2907 2032 129 7 10 chr15 21285217 21285511 -64410243 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr15 21285511 21285539 -64410215 + AT_rich Low_complexity Low_complexity 1 28 0 636 146 0 27 chr15 21285596 21285706 -64410048 - LTR49-int LTR ERV1 -3427 2904 2798 2615 61 0 0 chr15 21286342 21286652 -64409102 + AluY SINE Alu 1 310 -1 216 0 0 0 chr15 21286653 21286677 -64409077 + (CA)n Simple_repeat Simple_repeat 1 24 0 267 367 140 21 chr15 21286704 21287184 -64408570 + L2 LINE L2 2081 2617 -697 215 350 0 0 chr15 21287175 21287235 -64408519 - L2 LINE L2 -55 3258 3199 * 868 182 110 0 chr15 21287444 21287598 -64408156 - FRAM SINE Alu -6 170 1 2299 97 0 10 chr15 21287802 21288112 -64407642 - AluSq SINE Alu -6 307 1 2265 76 59 0 chr15 21288857 21289147 -64406607 + AluSq SINE Alu 1 307 -6 183 42 0 0 chr15 21289331 21289355 -64406399 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1787 109 8 8 chr15 21289463 21289720 -64406034 - AluSp SINE Alu -13 300 44 * 2390 70 27 0 chr15 21289719 21290019 -64405735 - AluY SINE Alu -3 308 1 207 69 0 0 chr15 21290242 21290271 -64405483 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 798 192 16 0 chr15 21290276 21290401 -64405353 - AluJ SINE Alu -30 282 156 1740 165 46 7 chr15 21290411 21290696 -64405058 - AluJo SINE Alu -16 296 1 28 29 0 0 chr15 21290699 21290734 -64405020 + AT_rich Low_complexity Low_complexity 1 35 0 2311 112 0 0 chr15 21290970 21291274 -64404480 - AluSq SINE Alu -9 304 1 1034 168 0 0 chr15 21291481 21291636 -64404118 - AluJ SINE Alu -157 155 1 2412 80 3 0 chr15 21292307 21292606 -64403148 - AluSp SINE Alu -13 300 1 27 0 0 0 chr15 21292691 21292718 -64403036 + AT_rich Low_complexity Low_complexity 1 27 0 211 274 0 16 chr15 21293790 21293852 -64401902 + L2 LINE L2 3173 3233 -80 322 130 0 0 chr15 21294681 21294727 -64401027 - Alu SINE Alu -8 292 247 2325 105 0 10 chr15 21294752 21295066 -64400688 - AluSx SINE Alu -1 311 1 2077 108 47 3 chr15 21295263 21295559 -64400195 + AluSx SINE Alu 1 309 -3 334 181 128 64 chr15 21295599 21295693 -64400061 + MIR3 SINE MIR 97 196 -12 226 143 54 0 chr15 21296172 21296228 -64399526 + (TA)n Simple_repeat Simple_repeat 2 60 0 412 123 59 6 chr15 21296251 21296421 -64399333 + (TA)n Simple_repeat Simple_repeat 2 180 0 1782 147 0 33 chr15 21296421 21296720 -64399034 - AluJb SINE Alu -23 289 1 900 147 8 0 chr15 21296762 21296891 -64398863 - FLAM_C SINE Alu -1 132 3 2039 119 51 0 chr15 21296901 21297194 -64398560 - AluSg SINE Alu -2 308 1 1846 86 67 11 chr15 21297842 21298132 -64397622 + AluY SINE Alu 1 305 0 2405 60 0 23 chr15 21298141 21298440 -64397314 + AluY SINE Alu 1 292 -19 2185 98 3 16 chr15 21298451 21298768 -64396986 + AluSq SINE Alu 1 313 0 2309 79 0 30 chr15 21298773 21299078 -64396676 + AluSg SINE Alu 2 297 -13 2192 50 36 11 chr15 21299302 21299581 -64396173 + AluY SINE Alu 1 286 -25 1803 155 7 29 chr15 21299760 21300069 -64395685 + AluJb SINE Alu 1 302 -10 2142 140 0 0 chr15 21300159 21300467 -64395287 - AluJb SINE Alu -4 308 1 2005 125 38 0 chr15 21300706 21300994 -64394760 + AluSg SINE Alu 2 300 -10 1490 165 4 4 chr15 21301074 21301344 -64394410 + AluJb SINE Alu 45 314 0 304 192 283 8 chr15 21301649 21301769 -64393985 + L1ME4a LINE L1 5969 6121 0 2241 112 0 0 chr15 21301866 21302162 -64393592 + AluSx SINE Alu 1 296 -16 2155 98 0 76 chr15 21302953 21303281 -64392473 - AluSq SINE Alu -10 303 1 25 0 0 0 chr15 21303574 21303599 -64392155 + AT_rich Low_complexity Low_complexity 1 25 0 2364 92 3 0 chr15 21305027 21305319 -64390435 - AluSx SINE Alu -19 293 1 689 218 75 32 chr15 21305365 21305553 -64390201 - L2 LINE L2 -5 3308 3113 2210 95 7 0 chr15 21305559 21305844 -64389910 + AluSg SINE Alu 1 287 -23 222 293 122 67 chr15 21305914 21306078 -64389676 - L2 LINE L2 -433 2881 2709 2408 59 0 7 chr15 21306222 21306510 -64389244 + AluSg SINE Alu 4 289 -21 2018 135 60 30 chr15 21306533 21306897 -64388857 - THE1C LTR MaLR 0 375 1 2257 56 19 0 chr15 21307057 21307356 -64388398 - AluSc SINE Alu 0 308 5 272 310 112 73 chr15 21307390 21307693 -64388061 - MLT1K LTR MaLR -22 566 252 1696 184 3 30 chr15 21307694 21307993 -64387761 + AluJb SINE Alu 1 291 -21 449 319 144 24 chr15 21308012 21308388 -64387366 + L1MEc LINE L1 35 455 -5941 2137 101 13 13 chr15 21308542 21308840 -64386914 + AluSx SINE Alu 1 298 -14 897 222 90 72 chr15 21309096 21309288 -64386466 + L1MEc LINE L1 666 853 -5422 2632 58 0 0 chr15 21309288 21309596 -64386158 - AluY SINE Alu -3 308 1 1833 140 7 18 chr15 21309598 21309883 -64385871 - AluSx SINE Alu -30 282 1 897 222 90 72 chr15 21309883 21310137 -64385617 + L1MEc LINE L1 853 1165 -5110 714 278 70 41 chr15 21310260 21310461 -64385293 - L2 LINE L2 -7 3306 3112 2156 79 18 7 chr15 21310461 21310762 -64384992 + AluSg SINE Alu 1 304 0 2157 114 7 0 chr15 21310764 21311072 -64384682 + AluSx SINE Alu 1 310 -2 714 278 70 41 chr15 21311072 21311136 -64384618 - L2 LINE L2 -201 3112 3029 382 127 273 67 chr15 21311168 21311229 -64384525 - Charlie5 DNA MER1_type -1 2584 2537 2516 54 0 3 chr15 21311229 21311526 -64384228 - AluY SINE Alu -15 296 1 382 127 273 67 chr15 21311526 21311614 -64384140 - Charlie5 DNA MER1_type -48 2537 2404 2036 106 32 0 chr15 21311614 21311898 -64383856 - AluSg SINE Alu -17 293 1 246 139 0 0 chr15 21311900 21311936 -64383818 + Alu SINE Alu 210 245 -58 1346 140 0 35 chr15 21311936 21312164 -64383590 + AluSg/x SINE Alu 83 302 -8 678 257 250 0 chr15 21312164 21312468 -64383286 - L2 LINE L2 -625 2689 2310 2334 92 0 3 chr15 21312701 21313004 -64382750 - AluSg SINE Alu -8 302 1 2184 123 3 0 chr15 21313008 21313309 -64382445 - AluSx SINE Alu -10 302 1 893 148 0 63 chr15 21313390 21313532 -64382222 + FLAM_A SINE Alu 1 133 0 601 168 35 18 chr15 21314016 21314129 -64381625 - FLAM_C SINE Alu -15 128 14 272 217 63 137 chr15 21314195 21314370 -64381384 + MIR SINE MIR 50 211 -51 800 184 7 0 chr15 21314496 21314637 -64381117 + FRAM SINE Alu 26 167 -9 704 258 61 0 chr15 21314645 21314808 -64380946 + FRAM SINE Alu 1 173 -3 247 308 118 86 chr15 21315131 21315448 -64380306 + L2 LINE L2 2824 3157 -115 2417 45 14 3 chr15 21315448 21315740 -64380014 + AluSg SINE Alu 1 295 -15 247 308 118 86 chr15 21315740 21315805 -64379949 + L2 LINE L2 3157 3218 -54 2262 89 3 3 chr15 21318728 21319020 -64376734 + AluSg SINE Alu 1 292 -18 1376 180 86 7 chr15 21319406 21319684 -64376070 - AluJo SINE Alu -7 305 6 2287 113 0 0 chr15 21319963 21320264 -64375490 - AluSp SINE Alu -12 301 1 922 118 0 29 chr15 21320267 21320403 -64375351 - AluJo/FLAM SINE Alu -169 133 2 2016 94 7 24 chr15 21320835 21321166 -64374588 - AluSq SINE Alu 0 326 1 2141 102 0 7 chr15 21321443 21321759 -64373995 - AluSg SINE Alu 0 314 1 2154 107 0 7 chr15 21321770 21322061 -64373693 - AluSx SINE Alu -23 289 1 1877 138 3 49 chr15 21322173 21322499 -64373255 + AluJb SINE Alu 1 311 -1 236 152 0 0 chr15 21322530 21322563 -64373191 - Alu SINE Alu -275 33 1 258 105 0 0 chr15 21322589 21322627 -64373127 + (CA)n Simple_repeat Simple_repeat 2 39 0 1284 114 0 0 chr15 21322627 21322802 -64372952 - AluSg/x SINE Alu -17 295 121 476 62 0 0 chr15 21322806 21322870 -64372884 - Alu SINE Alu -8 303 240 1801 93 0 17 chr15 21322870 21323107 -64372647 + AluSg SINE Alu 62 294 -16 237 33 0 0 chr15 21323211 21323241 -64372513 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2287 105 0 0 chr15 21323259 21323553 -64372201 + AluSc SINE Alu 1 294 -15 1584 181 7 28 chr15 21323553 21323839 -64371915 - AluJb SINE Alu -31 281 1 27 49 0 0 chr15 21323971 21324012 -64371742 + AT_rich Low_complexity Low_complexity 1 41 0 2258 106 10 0 chr15 21324119 21324420 -64371334 + AluSg SINE Alu 1 304 -6 2095 115 7 0 chr15 21324433 21324729 -64371025 + AluSx SINE Alu 7 304 -8 2362 91 0 0 chr15 21324748 21325046 -64370708 - AluSx SINE Alu -14 298 1 275 204 0 0 chr15 21325392 21325446 -64370308 - L3 LINE CR1 -1 1576 1523 286 386 8 8 chr15 21325654 21325781 -64369973 - MIR3 SINE MIR -53 155 29 2379 89 24 54 chr15 21325995 21326367 -64369387 - MER46B DNA MER2_type 0 236 1 2573 60 0 0 chr15 21327122 21327421 -64368333 + AluY SINE Alu 1 299 -12 371 268 60 127 chr15 21327589 21327903 -64367851 - L2 LINE L2 -775 2539 2247 231 36 0 0 chr15 21328261 21328289 -64367465 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2078 93 3 43 chr15 21328291 21328593 -64367161 - AluSg SINE Alu -15 295 6 579 178 36 23 chr15 21328618 21328808 -64366946 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr15 21328918 21328942 -64366812 + AT_rich Low_complexity Low_complexity 1 24 0 1543 256 94 27 chr15 21328999 21329323 -64366431 - L1MCc LINE L1 -2461 4480 4179 2309 112 0 0 chr15 21329323 21329635 -64366119 - AluSx SINE Alu 0 312 1 1543 256 94 27 chr15 21329635 21330948 -64364806 - L1MCc LINE L1 -2762 4179 25 2385 78 14 0 chr15 21331308 21331603 -64364151 + AluSx SINE Alu 1 299 -13 1832 166 0 3 chr15 21331833 21332128 -64363626 + AluJb SINE Alu 1 294 -18 2932 192 50 29 chr15 21332225 21333052 -64362702 - L1MB3 LINE L1 -39 6144 5336 1266 202 61 22 chr15 21333052 21333329 -64362425 - AluJo SINE Alu -24 288 1 2932 192 50 29 chr15 21333329 21333439 -64362315 - L1MB3 LINE L1 -847 5336 5230 384 71 0 0 chr15 21333439 21333495 -64362259 + (CA)n Simple_repeat Simple_repeat 1 56 0 1896 166 0 3 chr15 21333495 21333785 -64361969 - AluSx SINE Alu -23 289 1 2932 192 50 29 chr15 21333785 21333918 -64361836 - L1MB3 LINE L1 -952 5231 4912 2431 49 26 16 chr15 21333976 21334283 -64361471 - AluY SINE Alu -1 310 1 1942 151 0 20 chr15 21334324 21334629 -64361125 - AluJb SINE Alu -13 299 1 2190 115 0 3 chr15 21334772 21335076 -64360678 - AluSg SINE Alu -7 303 1 2128 104 31 0 chr15 21335076 21335363 -64360391 - AluSg SINE Alu -14 296 1 2047 126 0 7 chr15 21335485 21335796 -64359958 + AluSx SINE Alu 1 285 -27 1863 99 4 0 chr15 21335894 21336136 -64359618 - AluSg SINE Alu -12 298 56 311 229 86 19 chr15 21336277 21336382 -64359372 + MIR SINE MIR 125 236 -26 1784 116 0 36 chr15 21338493 21338769 -64356985 - AluSx SINE Alu -46 266 1 2034 136 7 3 chr15 21338846 21339141 -64356613 + AluSx SINE Alu 1 296 -16 437 262 184 44 chr15 21339397 21339728 -64356026 + L1ME4a LINE L1 5471 5754 -367 2218 114 3 7 chr15 21339728 21340036 -64355718 - AluSx SINE Alu -5 307 1 437 262 184 44 chr15 21340036 21340232 -64355522 + L1ME4a LINE L1 5754 5921 -200 1729 152 6 35 chr15 21340232 21340548 -64355206 - AluJo SINE Alu -5 307 1 437 262 184 44 chr15 21340548 21340588 -64355166 + L1ME4a LINE L1 5921 6119 -2 639 244 83 23 chr15 21340728 21340945 -64354809 - L1M4b LINE L1 -5423 1436 1207 22 35 0 0 chr15 21340945 21340974 -64354780 + AT_rich Low_complexity Low_complexity 1 29 0 348 280 113 34 chr15 21341101 21341340 -64354414 + L1ME4a LINE L1 5617 5874 -247 1346 244 87 38 chr15 21341354 21342193 -64353561 - L1ME2 LINE L1 -172 5992 5122 * 1428 207 30 19 chr15 21342187 21342554 -64353200 - L1ME2 LINE L1 -1898 4248 3878 14206 42 7 0 chr15 21342568 21344978 -64350776 - L1PA5 LINE L1 -5 6149 3734 2165 118 0 0 chr15 21345081 21345378 -64350376 - AluSx SINE Alu -15 297 1 2084 117 28 7 chr15 21345387 21345677 -64350077 - AluSx SINE Alu -16 296 1 866 134 17 0 chr15 21345700 21345819 -64349935 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr15 21346597 21346618 -64349136 + AT_rich Low_complexity Low_complexity 1 21 0 1689 192 7 3 chr15 21346624 21346916 -64348838 + AluJb SINE Alu 1 293 -19 1624 178 0 14 chr15 21348053 21348328 -64347426 + AluJo SINE Alu 11 281 -31 2562 29 0 35 chr15 21348328 21348637 -64347117 - AluY SINE Alu -12 299 1 5239 64 8 7 chr15 21348637 21349354 -64346400 - L1P LINE L1 -2402 3744 3027 2173 132 7 0 chr15 21349354 21349664 -64346090 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 21349665 21350081 -64345673 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 21350119 21350401 -64345353 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 21350996 21351153 -64344601 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 21351428 21351469 -64344285 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 21351733 21352022 -64343732 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 21352392 21352494 -64343260 + MIR SINE MIR 19 124 -84 2325 92 3 0 chr15 21352589 21352895 -64342859 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 21353165 21353208 -64342546 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 21353349 21353461 -64342293 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 21353697 21353884 -64341870 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 21353886 21354182 -64341572 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 21354192 21354429 -64341325 - Tigger2a DNA MER2_type -176 258 3 1179 205 64 8 chr15 21354467 21354716 -64341038 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 21354820 21355170 -64340584 - MER1B DNA MER1_type 0 337 1 1958 146 13 0 chr15 21355189 21355490 -64340264 - AluSx SINE Alu -7 305 1 180 0 0 0 chr15 21355627 21355647 -64340107 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2053 117 0 4 chr15 21355647 21355928 -64339826 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 21355933 21356243 -64339511 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 21356417 21356452 -64339302 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 21356495 21356658 -64339096 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 21356677 21356907 -64338847 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 21356981 21357210 -64338544 - MLT1B LTR MaLR -65 325 125 1949 114 18 7 chr15 21357210 21357490 -64338264 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 21357490 21357599 -64338155 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 21357971 21358117 -64337637 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 21358197 21358427 -64337327 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 21358427 21358721 -64337033 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 21358722 21358798 -64336956 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 21358975 21359147 -64336607 - MER7A DNA MER2_type -2693 345 174 2153 57 43 29 chr15 21359147 21359447 -64336307 + AluY SINE Alu 1 304 0 1713 164 58 60 chr15 21359447 21359620 -64336134 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 21359648 21359711 -64336043 + L1MC4a LINE L1 6672 6737 -1071 1514 246 175 33 chr15 21359718 21360052 -64335702 - L1MEc LINE L1 -1908 4307 4022 2289 114 0 3 chr15 21360052 21360360 -64335394 - AluSx SINE Alu -5 307 1 1514 246 175 33 chr15 21360360 21361061 -64334693 - L1MEc LINE L1 -2193 4022 3125 659 226 122 38 chr15 21361061 21361206 -64334548 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 21361206 21361728 -64334026 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 21361728 21361882 -64333872 - MER58 DNA MER1_type -131 2289 10 707 194 225 108 chr15 21361893 21362253 -64333501 - L1MEc LINE L1 -3085 3130 2813 294 85 0 0 chr15 21362253 21362300 -64333454 - MER41A LTR ERV1 -86 468 422 2393 59 7 13 chr15 21362301 21362605 -64333149 + AluY SINE Alu 1 302 -9 707 194 225 108 chr15 21362605 21362926 -64332828 - L1MEc LINE L1 -3401 2814 2316 2100 137 0 0 chr15 21362933 21363232 -64332522 - AluSx SINE Alu -13 299 1 451 236 39 44 chr15 21363235 21363417 -64332337 - L1MEc LINE L1 -4113 2283 2103 513 213 242 42 chr15 21363538 21363778 -64331976 - L1ME1 LINE L1 -190 5976 5689 388 94 0 62 chr15 21363830 21363894 -64331860 - L1MB7 LINE L1 -9 6175 6116 699 217 160 28 chr15 21363916 21364128 -64331626 - L1MA10 LINE L1 -29 6305 6066 3355 145 73 122 chr15 21364136 21365040 -64330714 - L1MB8 LINE L1 -42 6136 5189 1536 143 4 66 chr15 21365040 21365162 -64330592 - AluJb SINE Alu -69 243 144 1754 159 21 3 chr15 21365162 21365445 -64330309 - AluSx SINE Alu -24 288 1 1536 143 4 66 chr15 21365445 21365581 -64330173 - AluJb SINE Alu -168 144 1 3355 145 73 122 chr15 21365581 21365784 -64329970 - L1MB8 LINE L1 -989 5189 5053 2492 64 0 0 chr15 21365784 21366079 -64329675 - AluY SINE Alu -16 295 1 3355 145 73 122 chr15 21366079 21366232 -64329522 - L1MB8 LINE L1 -1125 5053 4894 473 224 133 6 chr15 21366230 21366395 -64329359 - L1ME1 LINE L1 -559 5603 5418 * 1092 191 44 0 chr15 21366400 21366604 -64329150 - AluJb SINE Alu -91 221 9 3506 230 106 50 chr15 21366605 21366677 -64329077 - Charlie1 DNA MER1_type -1102 1659 1592 1784 124 6 81 chr15 21366677 21366999 -64328755 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 21366999 21367058 -64328696 - Charlie1 DNA MER1_type -1169 1592 1538 2171 106 35 0 chr15 21367058 21367342 -64328412 + AluSx SINE Alu 1 294 -18 3506 230 106 50 chr15 21367342 21367465 -64328289 - Charlie1 DNA MER1_type -1223 1538 1423 194 0 39 0 chr15 21367465 21367491 -64328263 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3506 230 106 50 chr15 21367491 21367841 -64327913 - Charlie1 DNA MER1_type -1338 1423 1094 2447 84 0 0 chr15 21367841 21368138 -64327616 + AluSx SINE Alu 1 297 -15 3506 230 106 50 chr15 21368138 21368555 -64327199 - Charlie1 DNA MER1_type -1667 1094 701 2296 65 10 7 chr15 21368555 21368849 -64326905 - AluY SINE Alu -16 295 1 3506 230 106 50 chr15 21368849 21368999 -64326755 - Charlie1 DNA MER1_type -2060 701 561 1333 196 134 0 chr15 21368999 21369305 -64326449 + MER7A DNA MER2_type 1 345 -1 3506 230 106 50 chr15 21369305 21369416 -64326338 - Charlie1 DNA MER1_type -2200 561 301 1642 189 0 17 chr15 21369425 21369721 -64326033 + AluJo SINE Alu 1 291 -21 1734 144 20 37 chr15 21369734 21370033 -64325721 + AluJo SINE Alu 1 294 -18 2380 84 0 3 chr15 21370039 21370335 -64325419 + AluSp SINE Alu 2 296 -17 1867 147 6 28 chr15 21370648 21370967 -64324787 + AluSq SINE Alu 1 312 -1 227 233 33 17 chr15 21371013 21371073 -64324681 - L1M4c LINE L1 -4731 1653 1593 1657 108 104 21 chr15 21371187 21371466 -64324288 + AluSx SINE Alu 5 306 -6 180 97 0 0 chr15 21371541 21371572 -64324182 + (A)n Simple_repeat Simple_repeat 1 31 0 676 256 0 0 chr15 21371587 21371716 -64324038 + FLAM_A SINE Alu 1 129 -13 1724 166 17 7 chr15 21371881 21372170 -64323584 - AluJo SINE Alu 0 312 21 1538 176 16 0 chr15 21373078 21373334 -64322420 + AluJo SINE Alu 47 306 -6 846 143 0 0 chr15 21373535 21373654 -64322100 + FLAM_C SINE Alu 1 119 -24 2316 107 3 0 chr15 21374054 21374354 -64321400 - AluSp SINE Alu -12 301 1 21 0 0 0 chr15 21374354 21374375 -64321379 + AT_rich Low_complexity Low_complexity 1 21 0 869 146 89 13 chr15 21374641 21374799 -64320955 - AluJo SINE Alu -25 287 118 2303 100 0 13 chr15 21375460 21375771 -64319983 + AluSg SINE Alu 1 307 -3 1463 110 0 0 chr15 21375842 21376033 -64319721 + AluSq SINE Alu 106 296 -17 2020 136 0 17 chr15 21376934 21377236 -64318518 + AluSx SINE Alu 1 297 -15 1179 199 38 0 chr15 21377528 21377739 -64318015 + MER20 DNA MER1_type 1 219 0 1895 147 57 45 chr15 21377840 21378173 -64317581 - MER1B DNA MER1_type 0 337 1 2043 123 3 19 chr15 21379240 21379548 -64316206 - AluSq SINE Alu -9 304 2 1414 187 9 57 chr15 21379653 21379968 -64315786 + AluJo SINE Alu 1 300 -12 343 309 0 0 chr15 21380036 21380120 -64315634 - L2 LINE L2 -289 2983 2900 383 141 26 39 chr15 21380278 21380315 -64315439 - MER41A LTR ERV1 -87 467 431 2166 114 26 13 chr15 21380315 21380621 -64315133 + AluSg SINE Alu 1 310 0 383 141 26 39 chr15 21380621 21380661 -64315093 - MER41A LTR ERV1 -123 431 391 269 320 262 6 chr15 21380661 21381008 -64314746 - L2 LINE L2 -577 2737 2302 2202 79 3 27 chr15 21381011 21381330 -64314424 + AluSp SINE Alu 1 312 0 256 309 0 24 chr15 21381547 21381673 -64314081 + CT-rich Low_complexity Low_complexity 4 126 0 289 355 116 47 chr15 21381689 21382542 -64313212 - L2 LINE L2 -2104 1210 299 1897 149 24 17 chr15 21382617 21382912 -64312842 - AluJb SINE Alu -15 297 1 21 36 0 0 chr15 21382945 21382973 -64312781 + AT_rich Low_complexity Low_complexity 1 28 0 1495 189 26 23 chr15 21384247 21384360 -64311394 + AluJo SINE Alu 1 112 -200 1919 131 0 24 chr15 21384360 21384650 -64311104 - AluSx SINE Alu -29 283 1 1495 189 26 23 chr15 21384650 21384842 -64310912 + AluJo SINE Alu 112 307 -5 546 151 12 0 chr15 21384936 21385022 -64310732 + Tigger5 DNA MER2_type 2237 2323 0 183 255 196 59 chr15 21385837 21385990 -64309764 + MIR SINE MIR 79 252 -10 1852 164 3 19 chr15 21385993 21386303 -64309451 + AluJb SINE Alu 1 305 -7 1251 166 100 30 chr15 21386819 21387090 -64308664 + AluJo SINE Alu 4 293 -19 2055 122 0 19 chr15 21387109 21387421 -64308333 + AluSx SINE Alu 1 306 -6 2198 114 7 0 chr15 21387452 21387751 -64308003 - AluSp SINE Alu -12 301 1 1703 118 118 0 chr15 21387782 21388045 -64307709 + AluSg1 SINE Alu 1 294 -15 2006 138 7 3 chr15 21388135 21388433 -64307321 + AluSx SINE Alu 3 301 -11 189 200 25 0 chr15 21388452 21388492 -64307262 - L2 LINE L2 -10 3262 3222 1296 180 153 0 chr15 21389070 21389331 -64306423 + AluJb SINE Alu 1 301 -11 2393 67 0 17 chr15 21389851 21390151 -64305603 - AluY SINE Alu -16 295 1 1847 176 0 7 chr15 21390194 21390489 -64305265 + AluSx SINE Alu 1 293 -19 1504 161 77 18 chr15 21390806 21391091 -64304663 + AluJo SINE Alu 1 302 -10 1781 114 4 0 chr15 21391099 21391335 -64304419 + AluSq SINE Alu 1 237 -76 608 188 61 117 chr15 21391551 21391610 -64304144 - MER5A DNA MER1_type -3 186 125 2187 89 41 3 chr15 21391610 21391902 -64303852 + AluSq SINE Alu 2 304 -9 608 188 61 117 chr15 21391902 21392039 -64303715 - MER5A DNA MER1_type -64 125 1 331 177 32 0 chr15 21394633 21394695 -64301059 - L1MB5 LINE L1 -8 6166 6103 23 54 0 0 chr15 21394899 21394936 -64300818 + AT_rich Low_complexity Low_complexity 1 37 0 938 245 77 0 chr15 21394944 21395152 -64300602 - MER58A DNA MER1_type 0 224 1 1948 189 9 46 chr15 21395690 21396040 -64299714 - MER1B DNA MER1_type 0 337 1 2209 122 7 0 chr15 21396058 21396362 -64299392 - AluSx SINE Alu -6 306 1 202 93 0 70 chr15 21396632 21396675 -64299079 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 21396816 21396928 -64298826 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 21397164 21397351 -64298403 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 21397353 21397649 -64298105 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 21397659 21397896 -64297858 - Tigger2a DNA MER2_type -176 258 3 1168 206 65 8 chr15 21397934 21398181 -64297573 - AluJb SINE Alu -49 263 3 272 288 0 98 chr15 21398290 21398443 -64297311 - MER1B DNA MER1_type -4 335 198 2143 117 0 7 chr15 21399888 21400196 -64295558 + AluSx SINE Alu 3 308 -4 1148 140 34 10 chr15 21400412 21400619 -64295135 + AluJo SINE Alu 1 212 -100 1589 176 47 3 chr15 21400970 21401266 -64294488 + AluJo SINE Alu 1 309 -3 2218 112 3 10 chr15 21401272 21401586 -64294168 + AluSx SINE Alu 1 312 0 2195 122 0 22 chr15 21401846 21402157 -64293597 - AluSx SINE Alu -8 304 1 1755 169 17 10 chr15 21402233 21402535 -64293219 - AluJb SINE Alu -8 304 1 2447 58 0 3 chr15 21402596 21402887 -64292867 - AluY SINE Alu -21 290 1 2183 110 3 19 chr15 21402887 21403204 -64292550 - AluSx SINE Alu 0 312 1 773 213 6 30 chr15 21403653 21403822 -64291932 - MIR SINE MIR 0 262 98 2011 134 0 41 chr15 21403896 21404216 -64291538 - AluJb SINE Alu -5 307 1 878 124 0 0 chr15 21404462 21404591 -64291163 + AluSg1 SINE Alu 2 130 -179 1719 138 15 8 chr15 21404778 21405046 -64290708 + AluSg1 SINE Alu 28 297 -12 2100 120 0 22 chr15 21405300 21405617 -64290137 - AluSx SINE Alu -2 310 1 186 40 0 0 chr15 21405766 21405775 -64289979 + (TA)n Simple_repeat Simple_repeat 1 9 -16 1786 136 79 0 chr15 21405775 21406040 -64289714 + AluSx SINE Alu 1 286 -26 186 40 0 0 chr15 21406040 21406055 -64289699 + (TA)n Simple_repeat Simple_repeat 8 25 0 2097 106 3 40 chr15 21406104 21406407 -64289347 - AluSx SINE Alu -19 293 2 21 36 0 0 chr15 21406515 21406543 -64289211 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr15 21406602 21406641 -64289113 + AT_rich Low_complexity Low_complexity 1 39 0 679 118 41 178 chr15 21407642 21407707 -64288047 + MER46A DNA MER2_type 1 73 -163 1884 163 10 0 chr15 21407707 21408014 -64287740 + AluSx SINE Alu 3 312 0 1578 177 26 46 chr15 21408024 21408329 -64287425 + AluJb SINE Alu 1 299 -13 679 118 41 178 chr15 21408329 21408421 -64287333 + MER46A DNA MER2_type 83 146 -90 854 147 147 6 chr15 21408928 21409091 -64286663 + AluSx SINE Alu 2 187 -125 948 174 32 18 chr15 21409193 21409412 -64286342 + L1M4 LINE L1 3464 3685 -2461 24 0 0 0 chr15 21409470 21409494 -64286260 + AT_rich Low_complexity Low_complexity 1 24 0 579 178 36 23 chr15 21409604 21409794 -64285960 + MER46A DNA MER2_type 1 236 0 2052 99 3 43 chr15 21409819 21410121 -64285633 + AluSg SINE Alu 6 295 -15 2237 96 0 3 chr15 21410219 21410510 -64285244 + AluSq SINE Alu 1 290 -23 2321 82 0 7 chr15 21412624 21412918 -64282836 + AluSp SINE Alu 1 292 -21 1994 129 58 3 chr15 21412954 21413303 -64282451 - AluSx SINE Alu 0 365 1 210 164 134 30 chr15 21413672 21413739 -64282015 - L2 LINE L2 -61 3252 3179 197 33 33 0 chr15 21413869 21413899 -64281855 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2153 92 0 0 chr15 21413903 21414176 -64281578 - AluSg SINE Alu -37 273 1 883 188 22 11 chr15 21414268 21414449 -64281305 + AluSg SINE Alu 2 184 -126 725 186 54 0 chr15 21415301 21415430 -64280324 + MER3 DNA MER1_type 6 141 -68 759 112 0 0 chr15 21415496 21415603 -64280151 + AluSg/x SINE Alu 204 310 -2 521 205 8 25 chr15 21416778 21416900 -64278854 + MIR SINE MIR 23 142 -66 22 65 0 0 chr15 21417227 21417258 -64278496 + AT_rich Low_complexity Low_complexity 1 31 0 2368 77 6 16 chr15 21417960 21418273 -64277481 - AluSp SINE Alu 0 313 4 2070 119 10 10 chr15 21418343 21418653 -64277101 - AluSx SINE Alu -2 310 1 626 191 0 19 chr15 21419745 21419850 -64275904 + FLAM_A SINE Alu 18 120 -22 2832 7 0 3 chr15 21419860 21420168 -64275586 + AluY SINE Alu 1 307 -4 180 0 0 0 chr15 21420169 21420189 -64275565 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1785 188 0 0 chr15 21420250 21420538 -64275216 - AluJb SINE Alu -24 288 1 2361 104 0 0 chr15 21420675 21420984 -64274770 + AluSx SINE Alu 1 309 -3 2164 124 0 0 chr15 21421201 21421500 -64274254 - AluSx SINE Alu -12 300 2 1389 181 32 8 chr15 21421501 21421593 -64274161 + AluJo SINE Alu 25 113 -199 486 0 0 0 chr15 21421593 21421647 -64274107 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1389 181 32 8 chr15 21421647 21421802 -64273952 + AluJo SINE Alu 113 278 -34 210 71 0 0 chr15 21421802 21421830 -64273924 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 1834 126 0 15 chr15 21421854 21422124 -64273630 + AluSx SINE Alu 39 304 -8 21 0 0 0 chr15 21424213 21424234 -64271520 + AT_rich Low_complexity Low_complexity 1 21 0 422 254 69 40 chr15 21426419 21426540 -64269214 - MER5B DNA MER1_type 0 178 49 248 70 23 0 chr15 21426540 21426583 -64269171 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 422 254 69 40 chr15 21426583 21426634 -64269120 - MER5B DNA MER1_type -129 49 1 22 80 0 0 chr15 21426897 21426947 -64268807 + AT_rich Low_complexity Low_complexity 1 50 0 273 221 183 29 chr15 21427119 21427223 -64268531 + MIR SINE MIR 72 191 -71 201 250 0 0 chr15 21427670 21427706 -64268048 - MIR SINE MIR -138 70 35 1042 86 0 29 chr15 21428263 21428402 -64267352 - AluSq/x SINE Alu -177 135 1 2354 57 43 7 chr15 21428613 21428913 -64266841 + AluY SINE Alu 1 311 0 1761 121 42 4 chr15 21428919 21429183 -64266571 + AluSq SINE Alu 1 274 -39 2051 118 20 3 chr15 21429462 21429758 -64265996 + AluSx SINE Alu 1 301 -11 237 300 20 40 chr15 21429758 21429858 -64265896 - L2 LINE L2 -32 3281 3184 832 477 45 7 chr15 21430370 21430657 -64265097 - AluJb SINE Alu -4 298 1 194 125 31 0 chr15 21430707 21430739 -64265015 + MIR SINE MIR 116 148 -114 2106 109 3 10 chr15 21430796 21431099 -64264655 - AluSx SINE Alu -10 302 2 2119 111 47 0 chr15 21431289 21431587 -64264167 - AluSx SINE Alu 0 312 1 2072 102 17 10 chr15 21431587 21431882 -64263872 - AluSq SINE Alu -15 298 2 1778 140 43 0 chr15 21431883 21432161 -64263593 - AluSx SINE Alu -9 303 14 2203 135 81 33 chr15 21432288 21432681 -64263073 - MLT2D LTR ERVL 0 414 3 244 320 147 0 chr15 21432799 21432874 -64262880 - L2 LINE L2 -36 3236 3151 1409 130 119 47 chr15 21432914 21433191 -64262563 - AluJo SINE Alu -15 297 1 2257 79 10 10 chr15 21433382 21433687 -64262067 - AluSx SINE Alu -7 305 1 181 185 31 15 chr15 21434741 21434806 -64260948 + C-rich Low_complexity Low_complexity 6 71 0 207 0 0 0 chr15 21435023 21435046 -64260708 + (CGG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 21435086 21435109 -64260645 + GC_rich Low_complexity Low_complexity 1 23 0 2409 93 3 0 chr15 21436850 21437152 -64258602 - AluSq SINE Alu -10 303 1 2364 63 25 0 chr15 21437241 21437526 -64258228 - AluY SINE Alu -19 292 1 210 71 0 0 chr15 21437549 21437577 -64258177 + (T)n Simple_repeat Simple_repeat 1 28 0 1657 157 24 41 chr15 21437606 21437762 -64257992 - AluJb SINE Alu -24 288 131 2528 73 0 0 chr15 21437762 21438062 -64257692 - AluSg1 SINE Alu -8 301 2 297 0 0 0 chr15 21438062 21438095 -64257659 + (TA)n Simple_repeat Simple_repeat 2 34 0 1657 157 24 41 chr15 21438095 21438230 -64257524 - AluJb SINE Alu -179 133 1 962 141 0 7 chr15 21438257 21438399 -64257355 - AluJo SINE Alu -171 141 1 867 184 0 0 chr15 21438426 21438567 -64257187 - AluJb SINE Alu -171 141 1 478 130 0 0 chr15 21439264 21439333 -64256421 + FLAM_A SINE Alu 42 110 -32 276 240 40 10 chr15 21439622 21439722 -64256032 - L1MC5 LINE L1 -118 7843 7741 2454 71 7 0 chr15 21441244 21441538 -64254216 - AluSc SINE Alu -13 296 1 276 130 0 0 chr15 21441895 21441941 -64253813 + (T)n Simple_repeat Simple_repeat 1 46 0 1133 79 0 0 chr15 21442042 21442181 -64253573 + AluSp/q SINE Alu 165 303 -10 2259 94 0 0 chr15 21442197 21442473 -64253281 + AluSc SINE Alu 18 293 -16 23 54 0 0 chr15 21442653 21442690 -64253064 + AT_rich Low_complexity Low_complexity 1 37 0 1229 131 131 0 chr15 21443037 21443273 -64252481 - L1MA6 LINE L1 -5 6295 6029 331 230 23 0 chr15 21443345 21443432 -64252322 + MIR SINE MIR 112 200 -62 1885 123 18 7 chr15 21444273 21444558 -64251196 - AluSx SINE Alu -2 310 23 2289 82 4 0 chr15 21444607 21444886 -64250868 - AluSp SINE Alu -20 293 14 2319 91 7 13 chr15 21444894 21445203 -64250551 - AluSg SINE Alu -3 307 1 480 251 79 89 chr15 21445441 21445596 -64250158 + L1M4 LINE L1 4615 4770 -1376 2206 105 24 0 chr15 21445596 21445892 -64249862 + AluSq SINE Alu 1 303 -10 480 251 79 89 chr15 21445892 21446001 -64249753 + L1M4 LINE L1 4770 4879 -1267 1313 191 146 17 chr15 21446001 21446351 -64249403 - MSTD LTR MaLR 0 396 2 480 251 79 89 chr15 21446351 21446568 -64249186 + L1M4 LINE L1 4879 5092 -1054 2069 117 11 0 chr15 21446568 21446887 -64248867 + AluSp SINE Alu 1 322 0 2322 99 10 0 chr15 21446944 21447246 -64248508 + AluSg SINE Alu 1 305 -5 1294 106 62 0 chr15 21447246 21447425 -64248329 + AluSp SINE Alu 109 298 -15 500 244 132 43 chr15 21447472 21447730 -64248024 + L1M4 LINE L1 4040 4320 -1826 992 160 14 80 chr15 21447742 21447955 -64247799 - AluJo SINE Alu -12 300 102 532 309 32 28 chr15 21447962 21448296 -64247458 + L1M4 LINE L1 4330 4665 -1481 267 265 0 0 chr15 21448900 21448968 -64246786 + A-rich Low_complexity Low_complexity 5 72 0 2170 99 26 3 chr15 21449275 21449577 -64246177 - AluSc SINE Alu 0 309 1 2073 147 10 0 chr15 21449702 21450001 -64245753 - AluSx SINE Alu -10 302 1 2079 131 16 3 chr15 21450010 21450316 -64245438 - AluSx SINE Alu -2 310 1 2026 157 0 0 chr15 21450366 21450666 -64245088 + AluJo SINE Alu 7 306 -6 2462 63 3 3 chr15 21450667 21450967 -64244787 + AluY SINE Alu 1 300 -11 679 238 76 24 chr15 21451124 21451393 -64244361 - L1ME LINE L1 -344 5777 5501 208 175 132 114 chr15 21451428 21451542 -64244212 + MIR SINE MIR 39 154 -108 2226 134 0 0 chr15 21451551 21451857 -64243897 + AluSx SINE Alu 1 306 -6 1746 137 13 37 chr15 21453322 21453622 -64242132 - AluJb SINE Alu -19 293 1 1662 163 0 64 chr15 21453805 21453965 -64241789 - AluJo SINE Alu -19 293 161 2144 116 0 16 chr15 21453965 21454268 -64241486 - AluSx SINE Alu -14 298 1 1662 163 0 64 chr15 21454268 21454420 -64241334 - AluJo SINE Alu -151 161 1 1084 182 126 70 chr15 21454425 21454837 -64240917 - Charlie4a DNA MER1_type -73 435 1 481 160 160 0 chr15 21455679 21455779 -64239975 - AluSc SINE Alu -8 301 186 896 94 0 8 chr15 21455783 21455995 -64239759 + AluY SINE Alu 6 291 -20 1590 80 5 5 chr15 21455995 21456196 -64239558 - AluSq SINE Alu -112 201 1 2146 113 3 42 chr15 21456573 21456883 -64238871 + AluSx SINE Alu 1 298 -14 2466 61 10 0 chr15 21456885 21457178 -64238576 + AluY SINE Alu 1 296 -15 859 141 0 0 chr15 21457379 21457507 -64238247 - FLAM_C SINE Alu -5 128 1 317 343 119 0 chr15 21457985 21458128 -64237626 + MIR SINE MIR 33 192 -70 1792 164 10 0 chr15 21460861 21461160 -64234594 - AluSx SINE Alu -10 302 1 563 200 173 27 chr15 21461160 21461310 -64234444 - FAM SINE Alu 0 175 4 2153 114 7 3 chr15 21461516 21461815 -64233939 - AluSx SINE Alu -12 300 1 680 161 16 32 chr15 21462434 21462558 -64233196 - FLAM_A SINE Alu -11 122 1 1913 166 70 0 chr15 21462803 21463116 -64232638 - MER1B DNA MER1_type 0 339 5 1956 135 3 17 chr15 21464229 21464525 -64231229 - AluSx SINE Alu -20 292 1 2319 91 3 3 chr15 21464592 21464890 -64230864 + AluSg SINE Alu 1 298 -12 614 238 220 40 chr15 21465267 21465679 -64230075 + L1ME4a LINE L1 5506 5999 -122 276 188 43 0 chr15 21465712 21465781 -64229973 + L1ME4a LINE L1 6048 6119 -2 2328 85 30 3 chr15 21466412 21466717 -64229037 + AluSp SINE Alu 1 313 0 2280 92 31 0 chr15 21467238 21467530 -64228224 - AluSx SINE Alu -11 301 1 246 235 103 0 chr15 21468902 21468970 -64226784 + L2 LINE L2 3189 3263 -9 2505 78 0 0 chr15 21469010 21469319 -64226435 - AluY SINE Alu -2 309 1 1560 183 14 21 chr15 21469324 21469613 -64226141 - AluJo SINE Alu -21 291 5 329 218 120 30 chr15 21469639 21469772 -64225982 + L1ME4a LINE L1 5789 5933 -188 232 246 35 0 chr15 21469831 21469888 -64225866 + MIR SINE MIR 26 84 -178 2429 78 3 0 chr15 21470500 21470807 -64224947 - AluY SINE Alu -3 308 1 2081 132 0 0 chr15 21471545 21471826 -64223928 - AluSp SINE Alu -32 281 1 2127 138 0 0 chr15 21473016 21473313 -64222441 - AluSx SINE Alu -11 301 5 2582 72 3 0 chr15 21473383 21473690 -64222064 + AluSp SINE Alu 1 308 -5 318 263 56 26 chr15 21473757 21473889 -64221865 + L1MC/D LINE L1 5693 5830 -331 2493 70 0 3 chr15 21473889 21474190 -64221564 + AluY SINE Alu 1 300 -11 2190 116 0 3 chr15 21474356 21474650 -64221104 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 21474707 21474735 -64221019 + AT_rich Low_complexity Low_complexity 1 28 0 2030 164 0 0 chr15 21474743 21475053 -64220701 + AluJb SINE Alu 1 310 -2 180 0 0 0 chr15 21475067 21475087 -64220667 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 257 221 79 64 chr15 21475129 21475269 -64220485 + L1ME LINE L1 328 469 -5927 2461 52 10 32 chr15 21475543 21475853 -64219901 - AluY SINE Alu -8 303 1 2317 204 103 80 chr15 21476198 21476396 -64219358 + L1ME LINE L1 775 967 -5439 2358 106 0 6 chr15 21476396 21476708 -64219046 + AluSx SINE Alu 1 310 -2 2317 204 103 80 chr15 21476708 21476765 -64218989 + L1ME LINE L1 967 1021 -5385 2224 96 22 29 chr15 21476765 21477078 -64218676 + AluSx SINE Alu 1 311 -1 2317 204 103 80 chr15 21477078 21477294 -64218460 + L1ME LINE L1 1021 1231 -5175 3013 148 40 84 chr15 21477294 21477924 -64217830 + MER7C DNA MER2_type 1 602 0 2317 204 103 80 chr15 21477924 21478019 -64217735 + L1ME LINE L1 1231 1322 -5084 2249 90 0 45 chr15 21478019 21478331 -64217423 + AluSc SINE Alu 1 298 -11 2317 204 103 80 chr15 21478331 21478729 -64217025 + L1ME LINE L1 1322 1739 -4667 2117 140 0 0 chr15 21478729 21479029 -64216725 - AluJb SINE Alu -12 300 1 2317 204 103 80 chr15 21479029 21479115 -64216639 + L1ME LINE L1 1739 1822 -4584 444 54 0 0 chr15 21479135 21479191 -64216563 + Alu SINE Alu 2 57 -261 663 246 80 26 chr15 21479195 21479508 -64216246 + L1ME LINE L1 1995 2324 -4082 1072 235 43 4 chr15 21479511 21479788 -64215966 + L1ME LINE L1 3663 3950 -2456 1985 120 19 19 chr15 21479788 21480097 -64215657 + AluSx SINE Alu 1 309 -3 3164 216 35 34 chr15 21480866 21481027 -64214727 + L1M4 LINE L1 3519 3678 -2468 2091 137 0 0 chr15 21481027 21481320 -64214434 + AluSx SINE Alu 1 293 -19 3164 216 35 34 chr15 21481320 21481958 -64213796 + L1M4 LINE L1 3678 4322 -1824 2034 95 75 14 chr15 21481958 21482253 -64213501 + AluSq SINE Alu 1 313 0 3164 216 35 34 chr15 21482253 21482303 -64213451 + L1M4 LINE L1 4322 4370 -1776 1932 134 7 3 chr15 21483407 21483691 -64212063 - AluJo SINE Alu -27 285 1 2315 67 9 51 chr15 21484070 21484386 -64211368 + AluY SINE Alu 1 303 -8 1538 134 9 0 chr15 21484746 21484969 -64210785 - AluSg/x SINE Alu -9 303 79 2276 95 14 7 chr15 21485126 21485422 -64210332 + AluSx SINE Alu 1 298 -14 755 153 0 29 chr15 21485813 21485950 -64209804 + FLAM_C SINE Alu 1 133 0 1876 157 10 22 chr15 21486170 21486483 -64209271 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr15 21486542 21486578 -64209176 + AT_rich Low_complexity Low_complexity 1 36 0 2074 194 55 18 chr15 21487286 21487739 -64208015 + LTR22B LTR ERVK 23 492 0 2296 101 0 10 chr15 21488562 21488869 -64206885 - AluSg SINE Alu -6 304 1 639 159 22 65 chr15 21489198 21489336 -64206418 - FLAM_C SINE Alu 0 133 2 1317 156 120 36 chr15 21490453 21490593 -64205161 + AluJo SINE Alu 1 128 -184 2285 101 0 10 chr15 21490593 21490899 -64204855 + AluSx SINE Alu 4 306 -6 1317 156 120 36 chr15 21490899 21491034 -64204720 + AluJo SINE Alu 128 299 -13 1919 141 0 3 chr15 21491299 21491603 -64204151 + AluSx SINE Alu 1 303 0 997 161 43 0 chr15 21491604 21491765 -64203989 + AluJo/FRAM SINE Alu 133 300 -12 1713 158 34 14 chr15 21491958 21492250 -64203504 - AluJb SINE Alu -12 300 3 306 228 0 175 chr15 21492416 21492517 -64203237 + MIR SINE MIR 70 131 -131 1924 133 0 51 chr15 21492517 21492832 -64202922 - AluSx SINE Alu -13 299 1 306 228 0 175 chr15 21492832 21492901 -64202853 + MIR SINE MIR 131 210 -52 2443 70 0 6 chr15 21492906 21493218 -64202536 + AluSg SINE Alu 1 310 0 1357 190 6 80 chr15 21493226 21493552 -64202202 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 21493577 21493879 -64201875 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 21495865 21496169 -64199585 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 21496867 21496898 -64198856 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 21498048 21498355 -64197399 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 21498619 21498767 -64196987 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 21498811 21498832 -64196922 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 21498847 21498993 -64196761 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 21499038 21499199 -64196555 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 21499629 21499926 -64195828 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 21499932 21499983 -64195771 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 21500018 21500305 -64195449 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 21500312 21500622 -64195132 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 21500648 21501233 -64194521 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 21501233 21501539 -64194215 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 21501539 21501606 -64194148 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 21501812 21502149 -64193605 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 21502398 21502734 -64193020 + MER2 DNA MER2_type 2 343 -1 2399 86 10 19 chr15 21503404 21503718 -64192036 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 21504000 21504058 -64191696 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 21504326 21504513 -64191241 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 21506050 21506326 -64189428 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 21506430 21506479 -64189275 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 21506692 21507168 -64188586 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 21507469 21507630 -64188124 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 21507667 21507704 -64188050 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 21507893 21508186 -64187568 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 21508493 21508653 -64187101 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 21508653 21508960 -64186794 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 21508960 21509111 -64186643 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 21509141 21509435 -64186319 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 21509849 21509874 -64185880 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 21510042 21510567 -64185187 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 21510567 21510866 -64184888 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 21510866 21510940 -64184814 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 21510947 21511027 -64184727 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 21511068 21511117 -64184637 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 21511160 21511190 -64184564 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 21511190 21511453 -64184301 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 21512654 21512820 -64182934 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 21512993 21513281 -64182473 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 21513378 21513553 -64182201 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 21514965 21515255 -64180499 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 21515311 21515496 -64180258 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 21515491 21515624 -64180130 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 21515661 21515742 -64180012 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 21515747 21515904 -64179850 + LTR33 LTR ERVL 1 166 -355 774 285 68 45 chr15 21516051 21516447 -64179307 - L1ME3A LINE L1 -1070 5076 4672 1938 194 46 5 chr15 21516561 21516952 -64178802 - L1P LINE L1 -2006 4140 3734 2216 108 7 0 chr15 21516952 21517248 -64178506 - AluSx SINE Alu -13 299 2 581 279 145 16 chr15 21517270 21517701 -64178053 - L1ME3A LINE L1 -294 5876 5502 423 0 0 0 chr15 21517701 21517748 -64178006 + (TG)n Simple_repeat Simple_repeat 2 48 0 581 279 145 16 chr15 21517748 21518068 -64177686 - L1ME3A LINE L1 -668 5502 5016 802 147 0 0 chr15 21518072 21518188 -64177566 - AluYa5 SINE Alu -62 249 134 2487 61 3 7 chr15 21518307 21518617 -64177137 + AluSc SINE Alu 1 309 0 1357 190 6 80 chr15 21518625 21518951 -64176803 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 21518976 21519278 -64176476 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 21521269 21521573 -64174181 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 21522271 21522302 -64173452 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 21523452 21523759 -64171995 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 21524023 21524171 -64171583 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 21524215 21524236 -64171518 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 21524251 21524397 -64171357 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 21524442 21524603 -64171151 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 21525033 21525330 -64170424 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 21525336 21525387 -64170367 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 21525422 21525709 -64170045 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 21525716 21526026 -64169728 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 21526052 21526637 -64169117 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 21526637 21526943 -64168811 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 21526943 21527010 -64168744 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 21527216 21527553 -64168201 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 21527802 21528138 -64167616 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 21528808 21529122 -64166632 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 21529404 21529462 -64166292 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 21529730 21529917 -64165837 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 21531454 21531730 -64164024 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 21531834 21531883 -64163871 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 21532096 21532572 -64163182 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 21532873 21533034 -64162720 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 21533071 21533108 -64162646 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 21533297 21533590 -64162164 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 21533897 21534057 -64161697 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 21534057 21534364 -64161390 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 21534364 21534515 -64161239 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 21534545 21534839 -64160915 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 21535253 21535278 -64160476 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 21535446 21535971 -64159783 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 21535971 21536270 -64159484 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 21536270 21536344 -64159410 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 21536351 21536431 -64159323 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 21536472 21536521 -64159233 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 21536564 21536594 -64159160 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 21536594 21536857 -64158897 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 21538058 21538224 -64157530 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 21538397 21538685 -64157069 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 21538782 21538957 -64156797 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 21540369 21540659 -64155095 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 21540715 21540900 -64154854 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 21540895 21541028 -64154726 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 21541065 21541146 -64154608 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 21541151 21541308 -64154446 + LTR33 LTR ERVL 1 166 -355 801 293 65 31 chr15 21541455 21541807 -64153947 - L1ME3A LINE L1 -1070 5076 4713 1909 166 0 0 chr15 21541834 21542136 -64153618 - AluSx SINE Alu -9 303 2 255 217 0 33 chr15 21542596 21542656 -64153098 - L1ME3A LINE L1 -1524 4622 4565 * 615 225 39 93 chr15 21542653 21542780 -64152974 - L1ME3A LINE L1 -2042 4104 3972 2336 65 3 32 chr15 21542780 21543089 -64152665 + AluY SINE Alu 1 300 -11 2280 81 7 10 chr15 21543089 21543385 -64152369 + AluY SINE Alu 1 295 -16 615 225 39 93 chr15 21543385 21543514 -64152240 - L1ME3A LINE L1 -2172 3974 3861 239 277 0 0 chr15 21543708 21543773 -64151981 + MIR SINE MIR 90 154 -108 433 213 0 0 chr15 21543893 21543973 -64151781 + MER116 DNA Mariner 1 80 0 2211 102 24 0 chr15 21544275 21544569 -64151185 - AluSx SINE Alu -11 301 1 22 0 0 0 chr15 21544975 21544997 -64150757 + AT_rich Low_complexity Low_complexity 1 22 0 1528 161 26 59 chr15 21545100 21545256 -64150498 - AluJo SINE Alu -17 295 152 2269 87 28 0 chr15 21545256 21545544 -64150210 - AluSx SINE Alu -16 296 1 1528 161 26 59 chr15 21545544 21545692 -64150062 - AluJo SINE Alu -160 152 1 25 0 0 0 chr15 21545876 21545901 -64149853 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 21546500 21546526 -64149228 + AT_rich Low_complexity Low_complexity 1 26 0 2013 132 10 3 chr15 21547506 21547802 -64147952 - AluJb SINE Alu -14 298 1 1902 138 10 22 chr15 21548303 21548614 -64147140 - AluSx SINE Alu -5 307 1 3173 143 28 52 chr15 21548654 21548759 -64146995 + L1MA9 LINE L1 5726 5832 -480 991 143 0 0 chr15 21548759 21548892 -64146862 + FLAM_C SINE Alu 1 133 0 3173 143 28 52 chr15 21548892 21549386 -64146368 + L1MA9 LINE L1 5832 6311 -1 2251 100 7 3 chr15 21549406 21549706 -64146048 + AluSp SINE Alu 1 301 -12 1385 151 82 68 chr15 21549737 21549870 -64145884 - AluJo SINE Alu -16 296 166 2367 103 108 79 chr15 21549870 21550245 -64145509 + MSTA LTR MaLR 1 391 -37 2175 97 0 3 chr15 21550245 21550533 -64145221 - AluSx SINE Alu -25 287 1 2367 103 108 79 chr15 21550533 21550573 -64145181 + MSTA LTR MaLR 391 428 0 1385 151 82 68 chr15 21550573 21550731 -64145023 - AluJo SINE Alu -146 166 1 425 362 64 34 chr15 21551384 21551811 -64143943 - L2 LINE L2 -226 3046 2601 2255 89 3 7 chr15 21552147 21552440 -64143314 - AluSg SINE Alu -16 294 3 586 279 28 11 chr15 21554163 21554342 -64141412 - MIR SINE MIR -14 248 67 2166 83 4 11 chr15 21554342 21554618 -64141136 + AluSq SINE Alu 1 274 -39 236 246 0 82 chr15 21554626 21554687 -64141067 - MIR SINE MIR -184 78 23 2077 134 3 0 chr15 21555133 21555431 -64140323 - AluSg SINE Alu -11 299 1 559 258 81 58 chr15 21555578 21555938 -64139816 + L1ME4a LINE L1 5542 5909 -212 2106 175 44 76 chr15 21555940 21556215 -64139539 - LTR54 LTR ERV1 0 510 228 910 113 0 70 chr15 21556215 21556357 -64139397 - FLAM_C SINE Alu 0 133 2 2120 151 0 0 chr15 21556357 21556662 -64139092 - AluJb SINE Alu -7 305 1 2106 175 44 76 chr15 21556662 21556912 -64138842 - LTR54 LTR ERV1 -280 230 1 1585 168 39 7 chr15 21557071 21557356 -64138398 - AluJo SINE Alu -14 298 5 1787 125 80 7 chr15 21557619 21557908 -64137846 + AluJo SINE Alu 3 312 0 280 320 116 14 chr15 21558313 21558385 -64137369 + MIR3 SINE MIR 41 104 -104 2217 136 0 0 chr15 21558385 21558693 -64137061 - AluSq SINE Alu -5 308 1 280 320 116 14 chr15 21558693 21558767 -64136987 + MIR3 SINE MIR 104 202 -6 1456 183 11 42 chr15 21558854 21559138 -64136616 - AluSx SINE Alu -37 275 1 1794 146 36 11 chr15 21559153 21559434 -64136320 - AluSx SINE Alu -24 288 1 30 45 0 0 chr15 21559440 21559484 -64136270 + AT_rich Low_complexity Low_complexity 1 44 0 1847 166 10 7 chr15 21559491 21559793 -64135961 + AluSg SINE Alu 1 303 -7 348 143 0 0 chr15 21559795 21559844 -64135910 + MER58 DNA MER1_type 2353 2401 -19 1781 113 33 97 chr15 21559851 21560180 -64135574 + AluJo SINE Alu 5 312 0 2134 150 0 0 chr15 21560189 21560495 -64135259 + AluSx SINE Alu 1 306 -6 760 259 30 0 chr15 21560517 21560683 -64135071 - MER5A DNA MER1_type -18 171 1 382 226 36 93 chr15 21560896 21561017 -64134737 + L1MC4 LINE L1 7804 7930 -112 1778 68 0 5 chr15 21561017 21561236 -64134518 + AluY SINE Alu 84 301 -10 1903 119 22 0 chr15 21561241 21561510 -64134244 + AluSx SINE Alu 38 312 0 382 226 36 93 chr15 21561510 21561630 -64134124 + L1MC4 LINE L1 7934 8037 -5 446 193 105 4 chr15 21561635 21561771 -64133983 + L1MEc LINE L1 1007 1129 -5076 1804 157 20 7 chr15 21561863 21562162 -64133592 - AluSx SINE Alu -7 305 3 552 182 10 10 chr15 21562217 21562316 -64133438 + Tigger3b DNA MER2_type 2 100 -1131 1476 132 128 4 chr15 21562317 21562583 -64133171 + Tigger3b DNA MER2_type 275 573 -658 1967 123 10 14 chr15 21562734 21563047 -64132707 + AluSx SINE Alu 1 312 0 293 235 29 0 chr15 21563178 21563246 -64132508 + L1ME3A LINE L1 6011 6080 -90 1999 141 7 0 chr15 21563268 21563559 -64132195 + AluSx SINE Alu 1 293 -19 963 249 142 75 chr15 21563640 21563807 -64131947 + L1MB7 LINE L1 3839 3993 -2153 375 73 0 0 chr15 21563807 21563862 -64131892 + (CA)n Simple_repeat Simple_repeat 2 56 0 963 249 142 75 chr15 21563862 21563976 -64131778 + L1MB7 LINE L1 3993 4098 -2048 1586 197 7 0 chr15 21563976 21564266 -64131488 + AluJb SINE Alu 1 292 -20 963 249 142 75 chr15 21564266 21564483 -64131271 + L1MB7 LINE L1 4098 4299 -1847 2248 113 0 0 chr15 21564483 21564784 -64130970 + AluY SINE Alu 1 301 -10 963 249 142 75 chr15 21564784 21565262 -64130492 + L1MB7 LINE L1 4299 4883 -1263 2075 143 3 0 chr15 21565284 21565585 -64130169 - AluSx SINE Alu -10 302 1 207 0 0 0 chr15 21566138 21566161 -64129593 + (A)n Simple_repeat Simple_repeat 1 23 0 2272 110 7 0 chr15 21566297 21566605 -64129149 + AluSx SINE Alu 2 311 -1 29 28 0 0 chr15 21566620 21566656 -64129098 + AT_rich Low_complexity Low_complexity 1 36 0 1665 195 0 35 chr15 21566790 21567103 -64128651 + AluJo SINE Alu 1 302 -10 420 296 9 9 chr15 21567371 21567486 -64128268 + MIR SINE MIR 43 157 -105 305 212 10 50 chr15 21567521 21567620 -64128134 + L1ME4a LINE L1 5955 6049 -72 4802 148 81 45 chr15 21567642 21567968 -64127786 + L1MB7 LINE L1 4891 5204 -980 9074 168 8 40 chr15 21567968 21568093 -64127661 + L1PA15 LINE L1 3613 3740 -2425 2473 63 0 13 chr15 21568093 21568395 -64127359 + AluY SINE Alu 1 298 -13 9074 168 8 40 chr15 21568395 21570478 -64125276 + L1PA15 LINE L1 3740 5753 -412 1718 82 182 43 chr15 21570478 21570807 -64124947 - THE1C LTR MaLR 0 375 1 9074 168 8 40 chr15 21570807 21571202 -64124552 + L1PA15 LINE L1 5753 6159 -6 4802 148 81 45 chr15 21571202 21572151 -64123603 + L1MB7 LINE L1 5204 6184 0 367 299 33 48 chr15 21572175 21572364 -64123390 + MIR SINE MIR 27 206 -56 1993 142 10 7 chr15 21572443 21572745 -64123009 + AluSx SINE Alu 1 303 -9 1472 157 3 105 chr15 21573415 21573739 -64122015 - AluJo SINE Alu -17 295 5 2154 104 3 10 chr15 21573821 21574120 -64121634 + AluSq SINE Alu 1 297 -16 1302 208 123 4 chr15 21574448 21574708 -64121046 + AluJo SINE Alu 1 291 -11 329 161 0 0 chr15 21574708 21574764 -64120990 + AluJb SINE Alu 126 181 -121 1312 185 6 34 chr15 21574793 21575118 -64120636 + L1M1 LINE L1 2891 3206 -4359 1966 102 0 87 chr15 21575628 21575961 -64119793 - AluSp SINE Alu -8 305 2 402 311 56 6 chr15 21575961 21576122 -64119632 - Charlie8 DNA MER1_type -2248 169 1 23 0 0 0 chr15 21576151 21576174 -64119580 + AT_rich Low_complexity Low_complexity 1 23 0 411 279 108 0 chr15 21577399 21577528 -64118226 - MIR SINE MIR -10 252 110 1967 113 0 8 chr15 21577565 21577830 -64117924 - AluSx SINE Alu -8 304 42 376 337 111 11 chr15 21577965 21578146 -64117608 - L2 LINE L2 -399 2915 2717 500 311 72 14 chr15 21578412 21578621 -64117133 - L2 LINE L2 -605 2709 2489 530 172 11 0 chr15 21578649 21578735 -64117019 - MER44D DNA MER2_type 0 609 523 789 189 0 0 chr15 21578735 21578878 -64116876 + Tigger2 DNA MER2_type 1 143 -2575 1076 156 0 0 chr15 21578879 21579033 -64116721 - AluJb SINE Alu -23 289 136 3216 139 29 89 chr15 21579033 21579142 -64116612 + Tigger2 DNA MER2_type 130 244 -2474 1969 130 10 13 chr15 21579142 21579441 -64116313 + AluSx SINE Alu 1 298 -14 3216 139 29 89 chr15 21579441 21579471 -64116283 + Tigger2 DNA MER2_type 244 274 -2444 2162 97 20 10 chr15 21579471 21579769 -64115985 + AluSq SINE Alu 1 301 -12 3216 139 29 89 chr15 21579769 21580066 -64115688 + Tigger2 DNA MER2_type 274 518 -2200 779 177 8 0 chr15 21580066 21580190 -64115564 + FLAM_A SINE Alu 5 129 -4 3216 139 29 89 chr15 21580190 21580405 -64115349 + Tigger2 DNA MER2_type 518 744 -1974 1597 118 49 0 chr15 21580461 21580707 -64115047 + Tigger2 DNA MER2_type 2461 2718 0 1090 132 107 0 chr15 21580710 21580907 -64114847 - MER44D DNA MER2_type -90 519 32 215 300 62 0 chr15 21580926 21581006 -64114748 - L2 LINE L2 -1694 1620 1536 1362 316 73 13 chr15 21581007 21581636 -64114118 - L2 LINE L2 -1917 1397 731 1114 157 95 19 chr15 21582506 21582768 -64112986 - Charlie5 DNA MER1_type -97 2515 2234 1154 129 12 0 chr15 21582786 21582956 -64112798 + AluSg/x SINE Alu 125 296 -14 529 210 10 0 chr15 21582959 21583059 -64112695 - Charlie5 DNA MER1_type -2511 101 1 2419 81 0 7 chr15 21583377 21583674 -64112080 - AluSg SINE Alu -15 295 1 1290 148 118 53 chr15 21584643 21584704 -64111050 - MER33 DNA MER1_type -2261 324 268 2012 110 7 0 chr15 21584704 21585011 -64110743 + AluSx SINE Alu 11 319 0 1290 148 118 53 chr15 21585011 21585252 -64110502 - MER33 DNA MER1_type -2317 268 1 767 172 210 0 chr15 21585994 21586151 -64109603 + MER3 DNA MER1_type 6 195 -14 1638 140 87 14 chr15 21587304 21587590 -64108164 + AluJb SINE Alu 1 307 -5 518 287 169 33 chr15 21589227 21589499 -64106255 + L2 LINE L2 3003 3311 -2 2035 108 31 3 chr15 21589525 21589813 -64105941 - AluSx SINE Alu -16 296 1 1437 139 48 91 chr15 21589973 21590083 -64105671 + AluJb SINE Alu 16 129 -183 2061 92 20 27 chr15 21590083 21590376 -64105378 - AluSp SINE Alu -22 291 1 1437 139 48 91 chr15 21590376 21590574 -64105180 + AluJb SINE Alu 129 311 -1 605 288 44 40 chr15 21591584 21591834 -64103920 - MIR SINE MIR -10 252 2 262 198 140 89 chr15 21592534 21592576 -64103178 + Charlie7 DNA MER1_type 2444 2482 -130 2229 114 7 0 chr15 21592576 21592874 -64102880 + AluSx SINE Alu 1 300 -12 262 198 140 89 chr15 21592874 21592988 -64102766 + Charlie7 DNA MER1_type 2482 2608 -4 440 196 81 40 chr15 21593003 21593151 -64102603 + MER5A DNA MER1_type 36 189 0 1844 131 32 3 chr15 21595122 21595405 -64100349 - AluJb SINE Alu -19 293 3 2253 115 3 0 chr15 21596123 21596427 -64099327 + AluSx SINE Alu 1 305 -7 2190 104 7 7 chr15 21597677 21597975 -64097779 - AluSx SINE Alu -14 298 1 288 275 13 0 chr15 21598795 21598890 -64096864 - L1P LINE L1 -1165 4981 4886 1581 154 58 79 chr15 21599348 21599492 -64096262 - MER44D DNA MER2_type -1882 609 463 1672 140 45 48 chr15 21599492 21599784 -64095970 - AluJo SINE Alu -21 291 1 1581 154 58 79 chr15 21599784 21599969 -64095785 - MER44D DNA MER2_type -2028 463 17 258 160 0 0 chr15 21600489 21600539 -64095215 + CT-rich Low_complexity Low_complexity 2 51 0 853 149 0 22 chr15 21600816 21600950 -64094804 + FLAM_A SINE Alu 1 131 -2 184 370 0 28 chr15 21601209 21601317 -64094437 - MIR SINE MIR -74 134 30 5162 92 21 7 chr15 21601951 21602703 -64093051 + L1P LINE L1 3822 4584 -1562 1396 97 0 5 chr15 21602709 21602895 -64092859 + AluY SINE Alu 28 212 -99 22 70 0 0 chr15 21603142 21603185 -64092569 + AT_rich Low_complexity Low_complexity 1 43 0 1287 271 36 26 chr15 21603311 21603779 -64091975 + L1MEc LINE L1 491 963 -5600 230 196 0 0 chr15 21603794 21603840 -64091914 + L1MEc LINE L1 942 987 -5576 2981 184 28 3 chr15 21603843 21604409 -64091345 + L1MC3 LINE L1 7051 7630 -155 2445 66 10 7 chr15 21604624 21604929 -64090825 + AluY SINE Alu 1 306 -5 779 212 77 84 chr15 21604930 21605129 -64090625 + L1ME1 LINE L1 5195 5396 -770 1618 207 4 4 chr15 21605129 21605409 -64090345 + AluSx SINE Alu 4 283 -29 779 212 77 84 chr15 21605409 21605564 -64090190 + L1ME1 LINE L1 5396 5551 -615 1363 234 92 28 chr15 21605581 21605674 -64090080 + L1ME1 LINE L1 5742 5828 -338 2469 61 0 3 chr15 21605674 21605970 -64089784 + AluY SINE Alu 1 295 -16 1363 234 92 28 chr15 21605970 21606269 -64089485 + L1ME1 LINE L1 5828 6159 -7 225 0 0 0 chr15 21607917 21607942 -64087812 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 405 325 175 12 chr15 21608715 21609041 -64086713 + L2 LINE L2 676 1054 -2260 1089 181 70 0 chr15 21609052 21609267 -64086487 + AluJo SINE Alu 1 230 -82 234 327 120 77 chr15 21609274 21609690 -64086064 + L2 LINE L2 2839 3272 0 888 144 8 0 chr15 21610700 21610832 -64084922 + FLAM_C SINE Alu 1 133 0 2041 118 6 48 chr15 21612454 21612769 -64082985 + AluSq SINE Alu 1 302 -11 1747 214 107 120 chr15 21612778 21612878 -64082876 + L1MEc LINE L1 1202 1302 -5080 2080 129 3 3 chr15 21612878 21613172 -64082582 + AluSq SINE Alu 1 294 -19 1747 214 107 120 chr15 21613172 21613476 -64082278 + L1MEc LINE L1 1302 1608 -4774 573 167 167 0 chr15 21613476 21613578 -64082176 + AluJb SINE Alu 1 119 -193 1747 214 107 120 chr15 21613578 21614593 -64081161 + L1MEc LINE L1 1608 2697 -3685 1853 224 36 19 chr15 21614925 21614960 -64080794 + L1MEc LINE L1 3339 3372 -3010 1137 225 13 54 chr15 21614960 21615109 -64080645 + AluJb SINE Alu 1 132 -170 1746 176 0 0 chr15 21615109 21615404 -64080350 + AluSx SINE Alu 3 297 -15 1137 225 13 54 chr15 21615404 21615569 -64080185 + AluJb SINE Alu 132 302 0 1853 224 36 19 chr15 21615569 21615611 -64080143 + L1MEc LINE L1 3372 3412 -2970 1631 65 0 0 chr15 21615611 21615810 -64079944 + AluY SINE Alu 113 311 0 1853 224 36 19 chr15 21615810 21616317 -64079437 + L1MEc LINE L1 3412 3934 -2448 1810 193 29 33 chr15 21616335 21616904 -64078850 + L1MB5 LINE L1 5187 5746 -428 1723 104 8 4 chr15 21617136 21617387 -64078367 + MER57-int LTR ERV1 2394 2645 -2572 319 103 184 92 chr15 21617386 21617473 -64078281 + MER57-int LTR ERV1 5249 5343 -2194 * 2123 95 0 83 chr15 21617473 21617800 -64077954 - AluSx SINE Alu -12 300 1 1930 131 18 50 chr15 21618703 21619046 -64076708 + L1MB5 LINE L1 5843 6174 0 954 143 6 66 chr15 21619058 21619240 -64076514 + AluJb SINE Alu 1 171 -141 449 285 0 35 chr15 21619835 21620007 -64075747 - L1MEd LINE L1 -4932 1187 1022 252 0 0 0 chr15 21620707 21620735 -64075019 + (TG)n Simple_repeat Simple_repeat 1 28 0 5209 232 89 24 chr15 21620993 21623019 -64072735 - L1M4c LINE L1 -4483 2163 17 26861 27 4 0 chr15 21623019 21626938 -64068816 - L1PA3 LINE L1 0 6155 2224 10360 50 1 7 chr15 21626938 21628200 -64067554 - L1PA3 LINE L1 -4839 1307 54 516 254 152 5 chr15 21628478 21628695 -64067059 - MIR SINE MIR -1 261 13 2040 125 0 46 chr15 21628996 21629323 -64066431 + AluSx SINE Alu 1 312 0 211 274 0 0 chr15 21630100 21630151 -64065603 - L3 LINE CR1 -106 1471 1421 21 36 0 0 chr15 21630673 21630701 -64065053 + AT_rich Low_complexity Low_complexity 1 28 0 1027 140 26 79 chr15 21631977 21632206 -64063548 - MER20 DNA MER1_type 0 219 3 258 32 0 0 chr15 21632213 21632244 -64063510 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 3850 77 4 2 chr15 21632244 21632751 -64063003 + L1P LINE L1 3827 4334 -1812 339 87 22 0 chr15 21632893 21632939 -64062815 - MER20 DNA MER1_type -143 76 30 664 173 21 13 chr15 21632982 21633223 -64062531 + CT-rich Low_complexity Low_complexity 1 243 0 807 152 23 15 chr15 21633231 21633363 -64062391 - FLAM_C SINE Alu 0 133 1 213 314 35 23 chr15 21633419 21633505 -64062249 + L2 LINE L2 3112 3198 -74 212 331 121 16 chr15 21633736 21633860 -64061894 + MIR3 SINE MIR 66 202 -6 2068 156 0 0 chr15 21633935 21634242 -64061512 + AluJb SINE Alu 3 309 -3 258 93 116 0 chr15 21634268 21634311 -64061443 + MLT2C1 LTR ERVL 2 49 -348 * 375 229 110 17 chr15 21634304 21634422 -64061332 - MLT1J LTR MaLR -40 471 343 2125 121 10 3 chr15 21634426 21634733 -64061021 - MER49 LTR ERV1 0 923 615 2192 124 3 0 chr15 21634753 21635051 -64060703 - AluSx SINE Alu -13 299 1 859 182 0 7 chr15 21635051 21635199 -64060555 - MER49 LTR ERV1 -292 631 485 2328 89 0 3 chr15 21635199 21635501 -64060253 + AluY SINE Alu 1 301 -10 2320 103 20 86 chr15 21635501 21635575 -64060179 - MER49 LTR ERV1 -544 379 302 225 0 0 0 chr15 21635575 21635600 -64060154 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2320 103 20 86 chr15 21635600 21635921 -64059833 - MER49 LTR ERV1 -621 302 10 2244 126 0 7 chr15 21637390 21637700 -64058054 - AluSx SINE Alu -4 308 1 3598 168 74 6 chr15 21638035 21638748 -64057006 + L1MB8 LINE L1 5405 6166 -12 2224 81 18 0 chr15 21639833 21640118 -64055636 + AluSx SINE Alu 1 290 -22 27 29 0 0 chr15 21640168 21640202 -64055552 + AT_rich Low_complexity Low_complexity 1 34 0 814 255 57 21 chr15 21640238 21640520 -64055234 + MER20B DNA MER1_type 306 597 -186 1428 153 18 9 chr15 21640986 21641215 -64054539 + MER46A DNA MER2_type 6 236 0 205 200 89 0 chr15 21641352 21641397 -64054357 + L2 LINE L2 3263 3311 -2 724 262 32 63 chr15 21641670 21642017 -64053737 + LTR16A1 LTR ERVL 55 390 -67 505 104 0 0 chr15 21642019 21642086 -64053668 - AluSp/q SINE Alu -16 297 231 297 312 0 0 chr15 21642087 21642164 -64053590 + LTR16A1 LTR ERVL 381 457 0 916 161 195 99 chr15 21642222 21642284 -64053470 - MSTC LTR MaLR 0 428 373 1268 179 93 48 chr15 21642284 21642430 -64053324 + AluJo SINE Alu 1 139 -173 2447 81 0 0 chr15 21642430 21642727 -64053027 + AluY SINE Alu 1 297 -14 1268 179 93 48 chr15 21642727 21642871 -64052883 + AluJo SINE Alu 139 304 -8 916 161 195 99 chr15 21642871 21643162 -64052592 - MSTC LTR MaLR -55 373 41 31 0 0 0 chr15 21643175 21643206 -64052548 + AT_rich Low_complexity Low_complexity 1 31 0 621 58 0 0 chr15 21643206 21643292 -64052462 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 240 189 0 0 chr15 21643293 21643330 -64052424 - Alu SINE Alu -191 111 75 1386 143 0 23 chr15 21643330 21643547 -64052207 - AluJo SINE Alu -100 212 1 355 154 0 0 chr15 21643548 21643600 -64052154 - MSTC LTR MaLR -376 52 1 2156 90 0 28 chr15 21643694 21643982 -64051772 + AluSg SINE Alu 21 300 -10 457 95 0 0 chr15 21644397 21644460 -64051294 + Alu SINE Alu 240 302 -9 1728 157 19 26 chr15 21644951 21645264 -64050490 + AluJo SINE Alu 1 311 -1 238 250 0 0 chr15 21645461 21645505 -64050249 - MER8 DNA MER2_type 0 239 196 987 233 34 99 chr15 21645505 21645640 -64050114 - AluJb SINE Alu -1 301 159 1460 121 0 0 chr15 21645640 21645830 -64049924 - AluSg/x SINE Alu -32 278 89 987 233 34 99 chr15 21645830 21645855 -64049899 - AluJb SINE Alu -143 159 134 2262 88 3 14 chr15 21645855 21646149 -64049605 + AluSg SINE Alu 1 291 -19 987 233 34 99 chr15 21646149 21646309 -64049445 - AluJb SINE Alu -168 134 1 2416 198 40 2 chr15 21646555 21646999 -64048755 + MER65C LTR ERV1 1 461 0 485 243 10 129 chr15 21647096 21647227 -64048527 - MER5B DNA MER1_type 0 178 33 2032 122 19 0 chr15 21647227 21647556 -64048198 - AluSg SINE Alu 0 337 4 485 243 10 129 chr15 21647556 21647567 -64048187 - MER5B DNA MER1_type -145 33 22 429 36 0 0 chr15 21647567 21647622 -64048132 + (TG)n Simple_repeat Simple_repeat 2 56 0 485 243 10 129 chr15 21647622 21647679 -64048075 - MER5B DNA MER1_type -156 22 1 2601 212 138 72 chr15 21647694 21648408 -64047346 + MER21B LTR ERV1 1 667 -196 2267 167 14 39 chr15 21648408 21648429 -64047325 + MER57A LTR ERV1 1 21 -382 2029 128 3 0 chr15 21648429 21648718 -64047036 + AluSq SINE Alu 1 290 -23 2267 167 14 39 chr15 21648718 21648739 -64047015 + MER57A LTR ERV1 21 41 -362 1419 168 112 28 chr15 21648739 21649025 -64046729 + AluJo SINE Alu 1 310 -2 2267 167 14 39 chr15 21649025 21649394 -64046360 + MER57A LTR ERV1 41 403 0 2601 212 138 72 chr15 21649394 21649484 -64046270 + MER21B LTR ERV1 667 858 -5 874 114 0 54 chr15 21649743 21649892 -64045862 - FLAM_C SINE Alu -2 141 1 2260 142 24 6 chr15 21650147 21650485 -64045269 - MER2 DNA MER2_type 0 344 1 262 289 155 0 chr15 21650606 21650703 -64045051 + MIR3 SINE MIR 68 179 -29 1681 95 204 0 chr15 21651565 21651841 -64043913 + MER7A DNA MER2_type 18 335 -1 256 268 27 98 chr15 21651847 21651959 -64043795 + MIR3 SINE MIR 51 154 -54 263 186 0 0 chr15 21653145 21653188 -64042566 - 5S rRNA rRNA -78 43 1 211 217 43 0 chr15 21654101 21654147 -64041607 + L2 LINE L2 3199 3246 -26 1867 132 78 24 chr15 21654202 21654497 -64041257 - AluSx SINE Alu -1 311 1 259 228 139 0 chr15 21654869 21654970 -64040784 + Charlie7 DNA MER1_type 45 159 -2453 313 270 0 0 chr15 21655366 21655440 -64040314 + MIR SINE MIR 40 113 -149 1795 131 39 20 chr15 21655944 21656250 -64039504 - AluJo SINE Alu 0 312 1 496 264 91 53 chr15 21656466 21656674 -64039080 + MIR SINE MIR 46 261 -1 182 227 136 0 chr15 21657743 21657809 -64037945 - MIR SINE MIR -59 149 75 263 170 113 0 chr15 21658230 21658283 -64037471 + L2 LINE L2 3255 3313 0 211 205 0 0 chr15 21658283 21658322 -64037432 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 224 262 0 16 chr15 21658820 21658881 -64036873 + MIR SINE MIR 183 242 -20 21 0 0 0 chr15 21658900 21658921 -64036833 + AT_rich Low_complexity Low_complexity 1 21 0 835 162 7 7 chr15 21659431 21659567 -64036187 - AluJo SINE Alu -176 136 1 2349 202 82 27 chr15 21659684 21659768 -64035986 + L1ME1 LINE L1 5485 5563 -771 2309 124 0 0 chr15 21659768 21660074 -64035680 + AluSx SINE Alu 1 306 -6 2349 202 82 27 chr15 21660074 21660621 -64035133 + L1ME1 LINE L1 5563 6310 -24 23171 133 42 47 chr15 21660644 21662867 -64032887 + L1MA3 LINE L1 15 2247 -5477 2188 130 7 0 chr15 21662867 21663167 -64032587 + AluSx SINE Alu 1 302 -10 23171 133 42 47 chr15 21663167 21663499 -64032255 + L1MA3 LINE L1 2247 2579 -5145 2086 129 3 0 chr15 21663499 21663794 -64031960 + AluSg SINE Alu 1 296 -14 23171 133 42 47 chr15 21663794 21664663 -64031091 + L1MA3 LINE L1 2579 3451 -4273 1443 174 0 88 chr15 21664663 21664980 -64030774 + AluJb SINE Alu 1 289 -23 23171 133 42 47 chr15 21664980 21665690 -64030064 + L1MA3 LINE L1 3451 4163 -3561 2192 115 0 3 chr15 21665690 21665985 -64029769 - AluY SINE Alu -17 294 1 23171 133 42 47 chr15 21665985 21666889 -64028865 + L1MA3 LINE L1 4163 5070 -2654 2249 153 81 27 chr15 21666889 21667253 -64028501 + MSTA LTR MaLR 1 391 -37 2163 141 0 10 chr15 21667253 21667566 -64028188 - AluSx SINE Alu -2 310 1 2249 153 81 27 chr15 21667566 21667607 -64028147 + MSTA LTR MaLR 391 428 0 23171 133 42 47 chr15 21667607 21668378 -64027376 + L1MA3 LINE L1 5070 5843 -1881 2159 144 0 0 chr15 21668378 21668690 -64027064 + AluSx SINE Alu 1 312 0 23171 133 42 47 chr15 21668690 21669343 -64026411 + L1MA3 LINE L1 5843 6498 -1226 1210 196 20 42 chr15 21669343 21669649 -64026105 + AluSx SINE Alu 1 299 -13 23171 133 42 47 chr15 21669649 21670861 -64024893 + L1MA3 LINE L1 6498 7697 -27 49 0 0 0 chr15 21671387 21671436 -64024318 + AT_rich Low_complexity Low_complexity 1 49 0 1553 190 10 3 chr15 21671816 21672106 -64023648 + AluJb SINE Alu 6 297 -15 23 0 0 0 chr15 21672447 21672470 -64023284 + AT_rich Low_complexity Low_complexity 1 23 0 858 142 0 57 chr15 21672482 21672623 -64023131 + FLAM_A SINE Alu 1 133 0 374 218 197 16 chr15 21672651 21672793 -64022961 - MIR SINE MIR -68 140 16 310 164 14 14 chr15 21673011 21673084 -64022670 - L1ME4a LINE L1 -2 6119 6047 688 106 43 0 chr15 21673089 21673183 -64022571 + HY3 scRNA scRNA 1 98 -3 612 152 4 34 chr15 21673183 21673421 -64022333 + GA-rich Low_complexity Low_complexity 1 230 0 191 30 0 61 chr15 21674277 21674310 -64021444 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1872 128 7 47 chr15 21674631 21674927 -64020827 - AluSx SINE Alu -28 284 1 202 224 105 26 chr15 21675315 21675391 -64020363 - L2 LINE L2 -41 3272 3191 859 122 0 0 chr15 21675450 21675565 -64020189 + FLAM_C SINE Alu 12 126 -17 517 252 44 65 chr15 21675622 21675849 -64019905 - L1M4 LINE L1 -2631 3515 3296 1354 151 28 117 chr15 21675849 21676009 -64019745 - AluYb8 SINE Alu -22 296 178 2242 99 10 0 chr15 21676009 21676303 -64019451 - AluSx SINE Alu -15 297 1 1354 151 28 117 chr15 21676303 21676467 -64019287 - AluYb8 SINE Alu -140 178 1 517 252 44 65 chr15 21676467 21676560 -64019194 - L1M4 LINE L1 -2850 3296 3202 1080 226 28 0 chr15 21676771 21677023 -64018731 + LTR33 LTR ERVL 262 520 -1 230 337 35 0 chr15 21677123 21677209 -64018545 + L2 LINE L2 1335 1423 -1891 861 244 85 0 chr15 21677798 21678069 -64017685 - AluJo SINE Alu -4 308 15 1796 162 40 0 chr15 21678236 21678532 -64017222 - AluJo SINE Alu -4 308 1 317 319 40 31 chr15 21678547 21678773 -64016981 + L2 LINE L2 1916 2143 -1171 343 316 66 74 chr15 21679471 21679727 -64016027 + L2 LINE L2 3014 3267 -5 18713 130 21 94 chr15 21680013 21682541 -64013213 + L1PA7 LINE L1 12 2154 -3992 2370 90 0 7 chr15 21682541 21682842 -64012912 + AluSc SINE Alu 2 300 -9 18713 130 21 94 chr15 21682842 21684228 -64011526 + L1PA7 LINE L1 2154 3640 -2506 7547 59 1 0 chr15 21684568 21684672 -64011082 + L1PA7 LINE L1 4593 4695 -1459 207 0 0 0 chr15 21684672 21684695 -64011059 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7547 59 1 0 chr15 21684695 21686142 -64009612 + L1PA7 LINE L1 4695 6154 0 1622 179 10 3 chr15 21686176 21686466 -64009288 + AluSp SINE Alu 1 292 -21 499 168 21 0 chr15 21686692 21686787 -64008967 - AluJ/FLAM SINE Alu -210 102 6 49 0 0 0 chr15 21687167 21687216 -64008538 + AT_rich Low_complexity Low_complexity 1 49 0 1626 159 85 0 chr15 21688751 21689022 -64006732 - AluJb SINE Alu -18 294 1 180 0 0 0 chr15 21689197 21689217 -64006537 + (TA)n Simple_repeat Simple_repeat 2 21 0 779 183 9 0 chr15 21689225 21689340 -64006414 - FLAM_C SINE Alu -26 117 2 1097 182 52 0 chr15 21689970 21690162 -64005592 - AluJo SINE Alu -24 288 87 485 243 5 141 chr15 21690185 21690391 -64005363 + MER5B DNA MER1_type 1 178 0 3745 121 9 7 chr15 21690430 21690972 -64004782 - L1PB1 LINE L1 -4 6147 5605 4538 68 28 6 chr15 21690972 21691948 -64003806 + MER11A LTR ERVK 1 1235 -31 10426 189 5 20 chr15 21691959 21692779 -64002975 - L1PB1 LINE L1 -542 5609 4778 2186 108 0 23 chr15 21692779 21693086 -64002668 - AluY SINE Alu -11 300 1 10426 189 5 20 chr15 21693086 21694382 -64001372 - L1PB1 LINE L1 -1373 4778 3538 2164 136 0 13 chr15 21694382 21694698 -64001056 - AluSx SINE Alu 0 312 1 10426 189 5 20 chr15 21694698 21695193 -64000561 - L1PB1 LINE L1 -2613 3538 3037 2193 108 27 0 chr15 21695197 21695494 -64000260 - AluSq SINE Alu -8 305 1 23 33 0 0 chr15 21695564 21695594 -64000160 + AT_rich Low_complexity Low_complexity 1 30 0 1946 99 4 0 chr15 21695636 21695898 -63999856 - AluSc SINE Alu -3 306 44 1549 213 119 40 chr15 21696405 21696875 -63998879 + MLT1H LTR MaLR 1 507 -42 2373 83 0 3 chr15 21696875 21697176 -63998578 - AluY SINE Alu -11 300 1 1066 179 43 83 chr15 21697201 21697393 -63998361 - L1MA8 LINE L1 -5 6286 6111 2263 58 0 0 chr15 21697393 21697651 -63998103 - AluY SINE Alu -19 292 35 1066 179 43 83 chr15 21697651 21697783 -63997971 - L1MA8 LINE L1 -180 6111 5975 349 288 98 37 chr15 21697835 21698050 -63997704 + HAL1b LINE L1 515 742 -606 260 240 22 84 chr15 21699469 21699648 -63996106 + L1M3 LINE L1 4665 4832 -1314 549 315 84 18 chr15 21699749 21700202 -63995552 + L1M3 LINE L1 5330 5816 -364 958 127 0 7 chr15 21700312 21700462 -63995292 - L1MA1 LINE L1 0 6302 6154 21 36 0 0 chr15 21700476 21700504 -63995250 + AT_rich Low_complexity Low_complexity 1 28 0 18464 118 13 30 chr15 21700879 21701741 -63994013 - L1P LINE L1 -3264 2882 2007 2326 116 0 0 chr15 21701741 21702052 -63993702 - AluY SINE Alu 0 311 1 18464 118 13 30 chr15 21702052 21704109 -63991645 - L1P LINE L1 -4139 2007 11 14069 102 3 4 chr15 21704115 21706012 -63989742 + HERV9 LTR ERV1 3674 5568 -2831 10644 97 16 18 chr15 21706010 21707241 -63988513 + HERV9 LTR ERV1 6887 8116 -283 * 2397 85 3 7 chr15 21707241 21707546 -63988208 - AluY SINE Alu -7 304 1 10644 97 16 18 chr15 21707546 21707828 -63987926 + HERV9 LTR ERV1 8116 8397 -2 239 289 0 0 chr15 21707831 21707883 -63987871 + LTR30 LTR ERV1 1 52 -670 246 316 0 32 chr15 21709242 21709337 -63986417 - MIR3 SINE MIR -102 106 15 306 213 191 64 chr15 21709472 21709613 -63986141 - L2 LINE L2 -5 3267 3109 1958 158 30 0 chr15 21710130 21710428 -63985326 + AluSx SINE Alu 1 307 -5 327 212 248 44 chr15 21710564 21710701 -63985053 + MER20B DNA MER1_type 24 188 -595 342 0 0 0 chr15 21711418 21711456 -63984298 + (TTA)n Simple_repeat Simple_repeat 3 40 0 18805 31 4 0 chr15 21711456 21714419 -63981335 - L1PA3 LINE L1 -18 6137 3168 3974 28 0 10 chr15 21714420 21714913 -63980841 + L1PA3 LINE L1 2706 3193 -2953 419 281 124 22 chr15 21715541 21715726 -63980028 + MIR SINE MIR 27 230 -32 2247 122 3 0 chr15 21716287 21716591 -63979163 + AluSx SINE Alu 1 305 -7 230 53 26 0 chr15 21716592 21716630 -63979124 - MER5C DNA MER1_type -210 114 76 22 0 0 0 chr15 21717023 21717045 -63978709 + AT_rich Low_complexity Low_complexity 1 22 0 5149 143 140 7 chr15 21717587 21718487 -63977267 - LTR28 LTR ERV1 0 1020 1 475 211 86 8 chr15 21719303 21719431 -63976323 + AluJb SINE Alu 5 142 -170 7182 25 0 1 chr15 21719808 21720632 -63975122 - L1PA3 LINE L1 -79 6076 5254 770 137 15 23 chr15 21720635 21720766 -63974988 - AluJb SINE Alu -181 131 2 746 239 61 14 chr15 21720913 21721126 -63974628 + L1MB3 LINE L1 5729 5951 -232 636 71 12 0 chr15 21721259 21721343 -63974411 - AluSq/x SINE Alu -200 113 29 2113 135 3 0 chr15 21721369 21721672 -63974082 - AluSx SINE Alu -3 309 6 287 185 62 0 chr15 21721677 21721742 -63974012 + LTR37A LTR ERV1 287 355 -71 1636 193 3 17 chr15 21721742 21722043 -63973711 - AluJb SINE Alu -14 298 2 16229 75 2 3 chr15 21722435 21725433 -63970321 + L1PA6 LINE L1 3160 6153 -1 24101 113 32 17 chr15 21725435 21729014 -63966740 - HERV9 LTR ERV1 -4712 3687 54 724 174 50 0 chr15 21729036 21729157 -63966597 - LTR12 LTR ERV1 -236 478 352 293 266 21 11 chr15 21729157 21729251 -63966503 - LTR30 LTR ERV1 -104 618 524 898 205 16 21 chr15 21729319 21729509 -63966245 - LTR12 LTR ERV1 -510 204 16 1993 132 10 0 chr15 21729509 21729798 -63965956 + AluSx SINE Alu 13 304 -8 874 148 0 0 chr15 21729798 21729933 -63965821 - LTR8 LTR ERV1 -556 135 1 22219 133 51 49 chr15 21729933 21730746 -63965008 - HUERS-P1 LTR ERV1 0 6263 5453 1938 168 3 0 chr15 21730746 21731055 -63964699 - AluJb SINE Alu -2 310 1 22219 133 51 49 chr15 21731055 21734544 -63961210 - HUERS-P1 LTR ERV1 -810 5453 1242 186 43 0 0 chr15 21734544 21734567 -63961187 + (CA)n Simple_repeat Simple_repeat 2 24 0 22219 133 51 49 chr15 21734567 21735812 -63959942 - HUERS-P1 LTR ERV1 -5021 1242 1 4231 123 18 60 chr15 21735812 21736533 -63959221 - LTR8 LTR ERV1 0 691 1 1182 104 0 12 chr15 21737752 21737916 -63957838 + U1 snRNA snRNA 4 165 0 28 0 0 0 chr15 21737950 21737978 -63957776 + AT_rich Low_complexity Low_complexity 1 28 0 833 273 54 16 chr15 21738528 21738843 -63956911 - L2 LINE L2 -660 2654 2328 2479 116 13 84 chr15 21738844 21739309 -63956445 - MSTB1 LTR MaLR 0 432 1 7854 193 58 8 chr15 21739309 21740845 -63954909 - MSTB1-int LTR MaLR 0 1651 39 2354 91 0 10 chr15 21740845 21741143 -63954611 - AluY SINE Alu -16 295 1 359 310 63 0 chr15 21741150 21741308 -63954446 - L2 LINE L2 -1309 2005 1838 330 320 141 24 chr15 21741315 21741734 -63954020 - L2 LINE L2 0 3313 2846 1516 119 0 64 chr15 21742457 21742708 -63953046 + AluSx SINE Alu 1 235 -77 395 68 17 0 chr15 21742709 21742768 -63952986 + (GA)n Simple_repeat Simple_repeat 2 61 0 368 289 8 16 chr15 21742894 21743022 -63952732 + HAL1b LINE L1 521 647 -701 24 0 0 0 chr15 21743270 21743294 -63952460 + AT_rich Low_complexity Low_complexity 1 24 0 827 122 0 72 chr15 21743366 21743505 -63952249 + AluJo SINE Alu 7 135 -177 180 158 0 0 chr15 21743641 21743679 -63952075 + T-rich Low_complexity Low_complexity 1 38 0 37440 91 12 7 chr15 21743681 21749805 -63945949 - L1PA6 LINE L1 -1 6153 11 302 317 35 64 chr15 21749811 21750013 -63945741 + L1M4 LINE L1 2324 2519 -3627 247 267 22 11 chr15 21750071 21750161 -63945593 + L1M4 LINE L1 2651 2741 -3405 731 174 0 43 chr15 21750242 21750380 -63945374 + FLAM_C SINE Alu 2 133 0 776 227 0 6 chr15 21750400 21750576 -63945178 + L1M4 LINE L1 3608 3782 -2364 2327 90 13 7 chr15 21750583 21750884 -63944870 - AluSp SINE Alu -10 303 1 184 200 22 22 chr15 21750896 21750941 -63944813 - MER5B DNA MER1_type -124 54 10 2281 105 0 3 chr15 21751101 21751407 -63944347 - AluY SINE Alu -6 305 1 342 223 71 36 chr15 21751425 21751537 -63944217 + MIR SINE MIR 72 187 -75 190 333 108 0 chr15 21752927 21753038 -63942716 - L2 LINE L2 -10 3303 3181 586 201 97 0 chr15 21753169 21753313 -63942441 + MIR SINE MIR 63 220 -42 1081 172 63 77 chr15 21753355 21753640 -63942114 + MLT1D LTR MaLR 2 282 -223 186 314 0 0 chr15 21753954 21754005 -63941749 + MIR SINE MIR 177 227 -35 1353 180 79 0 chr15 21754005 21754272 -63941482 - MLT1D LTR MaLR 0 505 218 1577 172 108 13 chr15 21754729 21755043 -63940711 + MER2 DNA MER2_type 1 344 0 1088 196 14 19 chr15 21755064 21755278 -63940476 - AluJo SINE Alu -9 303 91 662 127 21 35 chr15 21755283 21755425 -63940329 - Charlie5 DNA MER1_type -62 2550 2411 1090 90 0 0 chr15 21755435 21755569 -63940185 + AluSx SINE Alu 3 136 -177 25 0 0 0 chr15 21755573 21755598 -63940156 + AT_rich Low_complexity Low_complexity 1 25 0 1169 140 0 6 chr15 21755607 21755785 -63939969 + AluSx SINE Alu 124 300 -12 606 173 122 8 chr15 21755787 21755918 -63939836 - MER33 DNA MER1_type -250 74 1 462 198 121 35 chr15 21756021 21756137 -63939617 - FLAM_C SINE Alu -4 129 4 2710 133 27 27 chr15 21756143 21756618 -63939136 - L1MA7 LINE L1 0 6291 5817 407 272 74 103 chr15 21757136 21757448 -63938306 - L2 LINE L2 -4 3268 2966 2281 112 3 0 chr15 21757480 21757783 -63937971 + AluSc SINE Alu 1 304 -5 397 309 111 11 chr15 21758717 21758898 -63936856 - MIR SINE MIR 0 262 64 810 263 42 33 chr15 21758898 21759324 -63936430 - L1M4 LINE L1 -2636 3510 3081 1618 192 10 7 chr15 21759331 21759639 -63936115 - AluJo SINE Alu -3 309 1 308 302 82 25 chr15 21759643 21759802 -63935952 - L1M4 LINE L1 -3856 2290 2123 2142 110 0 0 chr15 21760132 21760413 -63935341 - AluSx SINE Alu -31 281 1 623 140 123 26 chr15 21760434 21760548 -63935206 - FLAM_C SINE Alu -17 126 2 1013 220 69 4 chr15 21760647 21760879 -63934875 - MIR SINE MIR -14 248 2 21 0 0 0 chr15 21761011 21761032 -63934722 + AT_rich Low_complexity Low_complexity 1 21 0 234 237 0 0 chr15 21761187 21761246 -63934508 - MIR3 SINE MIR -11 197 139 1664 171 48 3 chr15 21761275 21761567 -63934187 - AluJo SINE Alu -7 305 1 2325 151 50 11 chr15 21761678 21762135 -63933619 + L1MB8 LINE L1 4869 5343 -803 4565 128 32 59 chr15 21762218 21762246 -63933508 + L1MB8 LINE L1 5348 5375 -803 1905 159 13 0 chr15 21762246 21762547 -63933207 + AluJb SINE Alu 1 305 -7 4565 128 32 59 chr15 21762547 21763369 -63932385 + L1MB8 LINE L1 5375 6175 -3 1054 268 70 50 chr15 21763674 21764114 -63931640 - MLT1J LTR MaLR -4 507 59 1372 192 96 29 chr15 21764116 21764397 -63931357 + AluJo SINE Alu 1 300 -2 513 0 0 0 chr15 21764405 21764462 -63931292 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2198 125 0 0 chr15 21764732 21765036 -63930718 - AluSc SINE Alu -5 304 1 1046 143 23 6 chr15 21766024 21766199 -63929555 - MER61E LTR ERV1 -51 518 341 310 181 0 97 chr15 21766294 21766366 -63929388 - MER61E LTR ERV1 -406 163 99 217 403 81 7 chr15 21766734 21766883 -63928871 + MIR3 SINE MIR 35 194 -14 437 53 0 0 chr15 21766949 21767006 -63928748 + L1PA6 LINE L1 6097 6153 -1 2289 66 42 0 chr15 21767122 21767409 -63928345 - AluY SINE Alu -12 299 1 345 149 23 11 chr15 21767526 21767613 -63928141 + GA-rich Low_complexity Low_complexity 2 89 0 24 0 0 0 chr15 21768074 21768098 -63927656 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 21768877 21768898 -63926856 + AT_rich Low_complexity Low_complexity 1 21 0 280 206 41 14 chr15 21769237 21769310 -63926444 - MLT1K LTR MaLR -5 583 509 464 190 100 10 chr15 21769445 21769545 -63926209 - FRAM SINE Alu -26 150 42 1501 239 68 60 chr15 21769863 21770345 -63925409 + MLT1F LTR MaLR 1 486 -56 846 165 0 0 chr15 21770345 21770472 -63925282 + FLAM_C SINE Alu 1 127 -16 294 224 60 0 chr15 21770476 21770543 -63925211 + MLT1F LTR MaLR 497 567 0 952 137 0 127 chr15 21770771 21770872 -63924882 + MER20 DNA MER1_type 35 97 -122 2547 49 0 10 chr15 21770872 21771176 -63924578 - AluY SINE Alu -10 301 1 952 137 0 127 chr15 21771176 21771286 -63924468 + MER20 DNA MER1_type 97 219 0 2495 51 3 0 chr15 21771925 21772221 -63923533 - AluY SINE Alu -14 297 1 2440 75 7 0 chr15 21772790 21773095 -63922659 + AluY SINE Alu 1 307 -4 1637 174 3 30 chr15 21774173 21774477 -63921277 - AluJo SINE Alu -16 296 1 1081 163 0 100 chr15 21774502 21774575 -63921179 + AluJo SINE Alu 64 143 -169 1695 174 0 40 chr15 21774575 21774879 -63920875 + AluSx SINE Alu 1 292 -20 1081 163 0 100 chr15 21774879 21775044 -63920710 + AluJo SINE Alu 143 278 -34 198 0 0 0 chr15 21775044 21775066 -63920688 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr15 21775065 21775097 -63920657 + (CA)n Simple_repeat Simple_repeat 1 32 0 227 257 0 27 chr15 21775166 21775240 -63920514 + L1ME LINE L1 5630 5701 -420 886 175 10 73 chr15 21775251 21775457 -63920297 + AluSg/x SINE Alu 120 312 0 1757 149 14 14 chr15 21775508 21775804 -63919950 + AluSx SINE Alu 1 296 -16 2889 169 25 6 chr15 21776266 21776745 -63919009 + LTR42 LTR ERVL 8 495 0 1786 182 3 3 chr15 21776912 21777208 -63918546 - AluJb SINE Alu -14 298 3 294 122 0 0 chr15 21777354 21777395 -63918359 + U13 snRNA snRNA 5 45 -59 309 307 20 60 chr15 21777571 21777721 -63918033 + MIR SINE MIR 53 196 -66 2097 140 0 3 chr15 21778491 21778799 -63916955 - AluSx SINE Alu -5 307 1 190 340 125 28 chr15 21779048 21779192 -63916562 + MIR3 SINE MIR 16 173 -35 1137 89 0 19 chr15 21779372 21779530 -63916224 + AluY SINE Alu 157 311 0 2126 269 69 7 chr15 21779552 21780150 -63915604 + ERVL LTR ERVL 1041 1675 -4089 2062 157 104 27 chr15 21780168 21780581 -63915173 - MSTB2 LTR MaLR -12 445 1 4446 224 60 20 chr15 21780584 21781630 -63914124 + ERVL LTR ERVL 1678 2765 -2999 1843 76 8 38 chr15 21781630 21781894 -63913860 - AluY SINE Alu -7 304 49 808 189 73 24 chr15 21781899 21782105 -63913649 - MLT1B LTR MaLR -174 216 1 2025 118 0 38 chr15 21782315 21782630 -63913124 - AluSx SINE Alu -4 308 6 1887 154 16 7 chr15 21782887 21783192 -63912562 - AluJb SINE Alu -3 309 2 394 108 27 14 chr15 21783306 21783380 -63912374 + GA-rich Low_complexity Low_complexity 1 75 0 1042 132 0 0 chr15 21783504 21783648 -63912106 - AluSq/x SINE Alu -169 144 1 2349 133 56 3 chr15 21783657 21784034 -63911720 - L1MB4 LINE L1 0 6180 5784 2325 154 22 0 chr15 21784038 21784396 -63911358 - MER47A DNA MER2_type 0 366 1 1994 94 15 0 chr15 21784696 21784961 -63910793 - AluSq SINE Alu -22 291 23 328 165 19 1 chr15 21785072 21785142 -63910612 - Alu SINE Alu -249 52 1 2138 78 11 4 chr15 21785171 21785441 -63910313 + AluSx SINE Alu 25 296 -16 206 0 69 0 chr15 21786126 21786155 -63909599 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1708 128 24 0 chr15 21786542 21786792 -63908962 + AluSg1 SINE Alu 41 296 -13 1729 178 20 0 chr15 21788046 21788339 -63907415 + AluJo SINE Alu 1 299 -13 2068 159 95 36 chr15 21788513 21788933 -63906821 + MER65A LTR ERV1 1 445 0 2512 74 6 3 chr15 21788978 21789290 -63906464 + AluSp SINE Alu 1 313 0 1522 275 36 11 chr15 21789921 21790368 -63905386 - ERVL LTR ERVL -4266 1498 1041 2518 57 0 16 chr15 21790390 21790706 -63905048 - AluY SINE Alu 0 311 1 317 314 57 8 chr15 21790857 21790981 -63904773 - ERVL LTR ERVL -5090 674 545 1332 71 6 0 chr15 21791015 21791183 -63904571 + AluY SINE Alu 1 169 -142 412 194 83 46 chr15 21792376 21792484 -63903270 - L2 LINE L2 -1 3271 3160 189 250 145 13 chr15 21792488 21792564 -63903190 + MIR SINE MIR 66 151 -111 737 135 0 63 chr15 21792564 21792690 -63903064 + AluJb SINE Alu 2 118 -194 22 56 0 0 chr15 21792690 21792726 -63903028 + AT_rich Low_complexity Low_complexity 1 36 0 704 106 10 19 chr15 21792890 21792994 -63902760 + FAM SINE Alu 63 165 -20 1280 144 45 12 chr15 21793014 21793259 -63902495 - MER33 DNA MER1_type -88 236 1 288 211 30 4 chr15 21793397 21793635 -63902119 + (TA)n Simple_repeat Simple_repeat 1 244 0 235 173 19 0 chr15 21793658 21793710 -63902044 + (TA)n Simple_repeat Simple_repeat 1 53 0 380 200 191 26 chr15 21793745 21793860 -63901894 - MER5A DNA MER1_type -21 168 35 2090 112 0 39 chr15 21794136 21794441 -63901313 - AluSx SINE Alu -18 294 2 338 148 19 0 chr15 21794710 21794764 -63900990 + MER57A LTR ERV1 289 343 -60 339 185 37 12 chr15 21794874 21794955 -63900799 + L1MC4 LINE L1 6971 7053 -989 745 81 30 0 chr15 21794955 21795054 -63900700 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 21795083 21795126 -63900628 + GA-rich Low_complexity Low_complexity 3 45 0 845 271 96 27 chr15 21795126 21795640 -63900114 + L1MC4 LINE L1 6999 7510 -298 583 237 89 50 chr15 21795642 21795927 -63899827 + L1MC4 LINE L1 7691 7992 -50 2340 99 0 0 chr15 21795927 21796229 -63899525 - AluSc SINE Alu -7 302 1 583 237 89 50 chr15 21796229 21796280 -63899474 + L1MC4 LINE L1 7992 8040 -2 212 340 125 28 chr15 21796601 21796745 -63899009 - MIR3 SINE MIR -35 173 16 2188 131 0 3 chr15 21796994 21797307 -63898447 + AluSx SINE Alu 1 312 0 32 43 0 0 chr15 21797527 21797573 -63898181 + AT_rich Low_complexity Low_complexity 1 46 0 645 120 29 6 chr15 21797574 21797749 -63898005 + (TA)n Simple_repeat Simple_repeat 2 180 0 391 283 19 57 chr15 21798425 21798584 -63897170 - MIR SINE MIR -66 196 44 24 0 0 0 chr15 21798722 21798746 -63897008 + AT_rich Low_complexity Low_complexity 1 24 0 283 156 0 0 chr15 21798752 21798797 -63896957 - U13 snRNA snRNA -59 45 1 1717 191 3 3 chr15 21798935 21799229 -63896525 + AluJb SINE Alu 5 298 -14 2925 163 25 6 chr15 21799391 21799870 -63895884 - LTR42 LTR ERVL 0 495 8 1922 135 0 26 chr15 21800332 21800636 -63895118 - AluSx SINE Alu -16 296 1 938 159 0 44 chr15 21800699 21800881 -63894873 - AluJb SINE Alu -2 310 137 1047 181 0 99 chr15 21801063 21801231 -63894523 - AluJo SINE Alu -30 282 144 1499 174 0 51 chr15 21801231 21801525 -63894229 - AluSx SINE Alu -33 279 1 1047 181 0 99 chr15 21801525 21801599 -63894155 - AluJo SINE Alu -168 144 64 1625 173 3 33 chr15 21801624 21801931 -63893823 + AluJo SINE Alu 1 298 -14 2221 92 0 7 chr15 21803591 21803886 -63891868 + AluY SINE Alu 1 293 -18 2431 84 0 3 chr15 21804099 21804408 -63891346 - AluSq SINE Alu -5 308 1 2218 111 0 3 chr15 21804635 21804933 -63890821 - AluSx SINE Alu -15 297 1 22 80 0 0 chr15 21804943 21804993 -63890761 + AT_rich Low_complexity Low_complexity 1 50 0 2216 106 7 0 chr15 21805005 21805298 -63890456 - AluSx SINE Alu -17 295 1 684 125 29 0 chr15 21805675 21805779 -63889975 + U6 snRNA snRNA 1 107 0 282 207 16 41 chr15 21805837 21805958 -63889796 + (TA)n Simple_repeat Simple_repeat 2 119 0 523 148 157 0 chr15 21806291 21806399 -63889355 - MER94 DNA DNA 0 134 10 22 0 0 0 chr15 21806507 21806529 -63889225 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 21806883 21806911 -63888843 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 21807178 21807213 -63888541 + AT_rich Low_complexity Low_complexity 1 35 0 973 113 41 97 chr15 21807686 21807881 -63887873 - MER20 DNA MER1_type 0 219 36 379 176 0 0 chr15 21808111 21808179 -63887575 - MLT1F LTR MaLR 0 567 500 947 134 0 0 chr15 21808179 21808313 -63887441 - AluJo SINE Alu -178 134 1 1498 246 58 60 chr15 21808313 21808800 -63886954 - MLT1F LTR MaLR -56 486 1 444 169 0 56 chr15 21809137 21809211 -63886543 + AluJb SINE Alu 210 280 -32 180 0 0 0 chr15 21809211 21809231 -63886523 + (CA)n Simple_repeat Simple_repeat 2 21 0 444 169 0 56 chr15 21809231 21809245 -63886509 + AluJb SINE Alu 280 293 -19 274 206 41 14 chr15 21809354 21809427 -63886327 + MLT1K LTR MaLR 509 583 -5 23 0 0 0 chr15 21809772 21809795 -63885959 + AT_rich Low_complexity Low_complexity 1 23 0 214 177 16 16 chr15 21811050 21811112 -63884642 + CT-rich Low_complexity Low_complexity 1 62 0 263 371 74 17 chr15 21811390 21811565 -63884189 - MIR3 SINE MIR -14 194 10 490 212 62 0 chr15 21811796 21811909 -63883845 + LTR25 LTR ERV1 244 363 -431 335 153 0 97 chr15 21811906 21811978 -63883776 + MER61E LTR ERV1 99 163 -406 * 971 160 23 6 chr15 21812073 21812248 -63883506 + MER61E LTR ERV1 341 518 -51 1757 94 0 0 chr15 21813236 21813459 -63882295 + AluSc SINE Alu 1 223 -86 355 266 71 24 chr15 21813459 21813832 -63881922 + L1M4 LINE L1 3124 3510 -2636 386 272 136 14 chr15 21813832 21813979 -63881775 + MIR SINE MIR 64 228 -34 2184 78 3 53 chr15 21814608 21814927 -63880827 - AluY SINE Alu -8 303 1 2207 110 0 3 chr15 21815277 21815577 -63880177 - AluSc SINE Alu -8 301 3 445 262 63 110 chr15 21815606 21815923 -63879831 + L2 LINE L2 2967 3268 -4 2584 126 27 27 chr15 21816449 21816924 -63878830 + L1MA7 LINE L1 5817 6291 0 427 191 122 35 chr15 21816935 21817050 -63878704 + FLAM_C SINE Alu 4 128 -5 1065 143 77 59 chr15 21817153 21817286 -63878468 + MER33 DNA MER1_type 1 120 -2465 1269 161 20 141 chr15 21817286 21817634 -63878120 - AluYb8 SINE Alu -2 306 1 1065 143 77 59 chr15 21817634 21817791 -63877963 + MER33 DNA MER1_type 120 285 -39 1070 201 14 18 chr15 21817795 21818014 -63877740 + AluJo SINE Alu 86 303 -9 1020 171 5 37 chr15 21818139 21818355 -63877399 - MER2 DNA MER2_type -136 209 1 449 254 61 6 chr15 21818583 21818748 -63877006 + MER65A LTR ERV1 272 445 0 215 260 0 0 chr15 21818754 21818793 -63876961 + A-rich Low_complexity Low_complexity 4 42 -38 1717 179 6 3 chr15 21818793 21819105 -63876649 + AluSp SINE Alu 1 313 0 215 260 0 0 chr15 21819105 21819142 -63876612 + A-rich Low_complexity Low_complexity 41 80 0 429 275 116 35 chr15 21819196 21819416 -63876338 + L1ME LINE L1 5239 5476 -686 5781 220 74 19 chr15 21819457 21820853 -63874901 - ERVL LTR ERVL -2615 3149 1678 464 115 11 46 chr15 21820856 21820943 -63874811 + MSTB2 LTR MaLR 1 84 -373 266 299 15 22 chr15 21821071 21821205 -63874549 - ERVL LTR ERVL -4892 872 740 292 292 34 11 chr15 21821240 21821329 -63874425 - ERVL LTR ERVL -5129 635 545 2197 101 0 3 chr15 21821365 21821661 -63874093 + AluY SINE Alu 3 297 -14 302 191 16 0 chr15 21821662 21821725 -63874029 - L1P LINE L1 -2379 3767 3704 1673 278 74 25 chr15 21821828 21822908 -63872846 - L1M4 LINE L1 -2901 3245 2113 1039 314 79 44 chr15 21822915 21823080 -63872674 - L1M4 LINE L1 -2971 3175 3017 2407 114 14 0 chr15 21823080 21823430 -63872324 + THE1A LTR MaLR 1 355 0 1039 314 79 44 chr15 21823430 21823750 -63872004 - L1M4 LINE L1 -3129 3017 2709 2096 118 3 0 chr15 21823750 21824038 -63871716 + AluSg SINE Alu 1 289 -21 1039 314 79 44 chr15 21824038 21824415 -63871339 - L1M4 LINE L1 -3437 2709 2271 2149 119 14 0 chr15 21824415 21824709 -63871045 - AluSq SINE Alu -15 298 1 1039 314 79 44 chr15 21824709 21824836 -63870918 - L1M4 LINE L1 -3875 2271 2150 22 35 0 0 chr15 21824879 21824908 -63870846 + AT_rich Low_complexity Low_complexity 1 29 0 583 103 0 0 chr15 21825372 21825450 -63870304 + AluS SINE Alu 1 78 -234 397 160 3 1 chr15 21825465 21825553 -63870201 + LOR1-int LTR ERV1 946 1312 -5446 1729 93 0 13 chr15 21826356 21826582 -63869172 - AluSg/x SINE Alu -16 296 74 802 244 89 26 chr15 21826582 21826836 -63868918 + L1M4 LINE L1 2814 3050 -3096 2369 100 0 0 chr15 21826836 21827146 -63868608 - AluSx SINE Alu -2 310 1 802 244 89 26 chr15 21827146 21827349 -63868405 + L1M4 LINE L1 3050 3300 -2846 443 201 92 55 chr15 21827591 21827755 -63867999 + L1MC5 LINE L1 7610 7779 -182 1209 108 0 0 chr15 21828461 21828619 -63867135 + AluSg/x SINE Alu 135 292 -18 214 73 49 24 chr15 21828622 21828663 -63867091 + A-rich Low_complexity Low_complexity 3 44 0 266 318 47 0 chr15 21828780 21828909 -63866845 + L2 LINE L2 2252 2386 -928 402 212 93 42 chr15 21830104 21830222 -63865532 - L2 LINE L2 -1 3271 3148 705 127 0 63 chr15 21830290 21830416 -63865338 + AluJb SINE Alu 1 118 -194 22 56 0 0 chr15 21830416 21830452 -63865302 + AT_rich Low_complexity Low_complexity 1 36 0 2158 112 3 0 chr15 21830776 21831061 -63864693 - AluSx SINE Alu -26 286 1 363 122 12 98 chr15 21831666 21831748 -63864006 - MER33 DNA MER1_type -6 318 244 1039 164 0 6 chr15 21831752 21831917 -63863837 + FAM SINE Alu 2 165 -20 1233 137 47 9 chr15 21831933 21832167 -63863587 - MER33 DNA MER1_type -88 236 1 280 229 25 0 chr15 21832316 21832559 -63863195 + (TA)n Simple_repeat Simple_repeat 1 249 0 245 208 13 0 chr15 21832585 21832662 -63863092 + (TA)n Simple_repeat Simple_repeat 2 79 0 380 200 191 26 chr15 21832697 21832812 -63862942 - MER5A DNA MER1_type -21 168 35 2199 105 0 3 chr15 21833099 21833393 -63862361 - AluSx SINE Alu -18 294 2 2405 55 0 26 chr15 21833575 21833883 -63861871 - AluY SINE Alu -11 300 1 324 148 19 0 chr15 21833979 21834033 -63861721 + MER57A LTR ERV1 289 343 -60 351 173 37 12 chr15 21834143 21834224 -63861530 + L1MC4 LINE L1 6971 7053 -989 788 61 30 0 chr15 21834224 21834323 -63861431 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 21834352 21834395 -63861359 + GA-rich Low_complexity Low_complexity 3 45 0 857 265 33 19 chr15 21834396 21834909 -63860845 + L1MC4 LINE L1 7074 7629 -413 589 237 89 50 chr15 21834911 21835196 -63860558 + L1MC4 LINE L1 7691 7992 -50 2246 97 0 7 chr15 21835196 21835504 -63860250 - AluSc SINE Alu -3 306 1 589 237 89 50 chr15 21835504 21835555 -63860199 + L1MC4 LINE L1 7992 8040 -2 23 0 0 0 chr15 21835576 21835599 -63860155 + AT_rich Low_complexity Low_complexity 1 23 0 212 340 125 28 chr15 21835882 21836026 -63859728 - MIR3 SINE MIR -35 173 16 1953 169 0 3 chr15 21836275 21836588 -63859166 + AluSx SINE Alu 1 312 0 729 228 5 5 chr15 21836868 21837052 -63858702 - L1M4 LINE L1 -2364 3782 3599 702 179 0 0 chr15 21837052 21837175 -63858579 - AluJb SINE Alu -187 125 3 2820 73 4 53 chr15 21837582 21842773 -63852981 + L1PA6 LINE L1 1029 6153 -1 783 145 0 69 chr15 21842943 21843088 -63852666 - AluJo SINE Alu -177 135 1 21 57 0 0 chr15 21843152 21843187 -63852567 + AT_rich Low_complexity Low_complexity 1 35 0 383 259 36 25 chr15 21843418 21843564 -63852190 - HAL1b LINE L1 -701 647 521 255 103 0 0 chr15 21843689 21843728 -63852026 + (TC)n Simple_repeat Simple_repeat 1 39 0 1395 138 0 96 chr15 21843730 21843990 -63851764 - AluSx SINE Alu -77 235 1 471 325 138 23 chr15 21844706 21845133 -63850621 + L2 LINE L2 2838 3313 0 684 273 158 43 chr15 21845140 21845583 -63850171 + L2 LINE L2 1838 2331 -983 2728 116 18 34 chr15 21845583 21846022 -63849732 + MSTB1 LTR MaLR 1 432 0 7964 194 56 13 chr15 21846022 21846427 -63849327 + MSTB1-int LTR MaLR 1 387 -1264 2390 49 3 16 chr15 21846427 21846734 -63849020 - AluY SINE Alu -8 303 1 7964 194 56 13 chr15 21846734 21847910 -63847844 + MSTB1-int LTR MaLR 387 1651 0 2478 114 13 84 chr15 21847910 21848375 -63847379 + MSTB1 LTR MaLR 1 432 0 928 277 54 16 chr15 21848376 21848690 -63847064 + L2 LINE L2 2328 2653 -661 24 0 0 0 chr15 21849245 21849269 -63846485 + AT_rich Low_complexity Low_complexity 1 24 0 670 95 0 0 chr15 21849301 21849385 -63846369 - U1 snRNA snRNA 0 165 82 305 167 21 111 chr15 21849485 21849629 -63846125 + Charlie5 DNA MER1_type 2416 2546 -66 1159 164 14 18 chr15 21849633 21849852 -63845902 + AluJo SINE Alu 86 303 -9 1230 137 14 19 chr15 21849976 21850188 -63845566 - MER2 DNA MER2_type -134 211 1 1358 189 70 14 chr15 21850641 21850926 -63844828 + MLT1D LTR MaLR 205 505 0 208 294 0 0 chr15 21850926 21850977 -63844777 - MIR SINE MIR -35 227 177 1119 165 67 77 chr15 21851286 21851571 -63844183 - MLT1D LTR MaLR -223 282 1 599 201 97 0 chr15 21851612 21851756 -63843998 - MIR SINE MIR -42 220 63 196 333 108 0 chr15 21851887 21851998 -63843756 + L2 LINE L2 3181 3303 -10 349 311 47 20 chr15 21853384 21853532 -63842222 - MIR SINE MIR -55 207 56 1726 91 0 21 chr15 21853536 21853777 -63841977 + AluY SINE Alu 4 239 -72 390 103 0 17 chr15 21853878 21853936 -63841818 - U1 snRNA snRNA -104 61 5 213 65 0 0 chr15 21854872 21854903 -63840851 + (CA)n Simple_repeat Simple_repeat 1 31 0 4448 116 14 59 chr15 21855173 21855897 -63839857 + LTR8 LTR ERV1 1 691 0 18051 140 34 47 chr15 21855897 21859274 -63836480 + HUERS-P1 LTR ERV1 1 3332 -2931 6555 155 44 10 chr15 21859277 21859662 -63836092 + HUERS-P1 LTR ERV1 3577 3948 -2315 1876 174 0 0 chr15 21859662 21859972 -63835782 + AluJb SINE Alu 1 310 -2 6555 155 44 10 chr15 21859972 21860786 -63834968 + HUERS-P1 LTR ERV1 3948 6263 0 945 115 0 0 chr15 21860786 21860916 -63834838 + LTR8 LTR ERV1 1 130 -561 1914 129 0 0 chr15 21860916 21861196 -63834558 - AluSx SINE Alu -2 310 31 251 250 0 0 chr15 21861196 21861248 -63834506 + LTR30 LTR ERV1 1 52 -670 794 180 29 100 chr15 21861248 21861487 -63834267 + LTR12 LTR ERV1 53 274 -440 251 267 27 0 chr15 21861491 21861566 -63834188 + LTR30 LTR ERV1 544 620 -102 715 189 76 0 chr15 21861566 21861698 -63834056 + LTR12 LTR ERV1 355 496 -218 24541 111 27 22 chr15 21861704 21863527 -63832227 + HERV9 LTR ERV1 52 1864 -6535 2153 107 0 0 chr15 21863527 21863827 -63831927 - AluY SINE Alu -3 308 9 24541 111 27 22 chr15 21863827 21865622 -63830132 + HERV9 LTR ERV1 1864 3688 -4711 37980 82 13 20 chr15 21865622 21866867 -63828887 - L1PA6 LINE L1 0 6154 4902 2135 100 0 3 chr15 21866867 21867190 -63828564 - AluY SINE Alu 0 311 1 37980 82 13 20 chr15 21867190 21872129 -63823625 - L1PA6 LINE L1 -1252 4902 11 1446 137 0 0 chr15 21872135 21872340 -63823414 + HERV9 LTR ERV1 3674 3878 -4521 2051 150 9 41 chr15 21872357 21872698 -63823056 + LTR8 LTR ERV1 362 691 0 2012 105 7 7 chr15 21872931 21873227 -63822527 - AluSq SINE Alu -17 296 1 183 231 39 0 chr15 21873275 21873327 -63822427 - L2 LINE L2 -19 3294 3241 302 250 61 104 chr15 21873386 21873550 -63822204 + MER5A DNA MER1_type 28 184 -5 1867 47 51 4 chr15 21873638 21873886 -63821868 + AluY SINE Alu 1 263 -48 192 40 0 0 chr15 21873886 21873911 -63821843 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 265 326 0 32 chr15 21875389 21875484 -63820270 - MIR3 SINE MIR -102 106 15 356 231 172 59 chr15 21875619 21875788 -63819966 - L2 LINE L2 -5 3267 3080 1718 156 45 0 chr15 21876267 21876556 -63819198 + AluSx SINE Alu 1 302 -10 276 246 285 23 chr15 21876694 21876824 -63818930 + MER20B DNA MER1_type 25 188 -595 462 285 124 27 chr15 21878208 21878394 -63817360 + MIR SINE MIR 27 230 -32 264 289 108 12 chr15 21878838 21878921 -63816833 - MER5C DNA MER1_type 0 324 234 2004 125 3 7 chr15 21878955 21879260 -63816494 + AluSx SINE Alu 1 304 -8 222 81 27 0 chr15 21879263 21879300 -63816454 - MER5C DNA MER1_type -211 113 76 5015 151 155 1 chr15 21880249 21881133 -63814621 - LTR28 LTR ERV1 0 1020 1 224 196 22 120 chr15 21881678 21881770 -63813984 - L2 LINE L2 -172 3100 3018 1522 164 63 7 chr15 21881965 21882251 -63813503 + AluJo SINE Alu 11 312 0 22 0 0 0 chr15 21882525 21882547 -63813207 + AT_rich Low_complexity Low_complexity 1 22 0 767 142 17 0 chr15 21882547 21882667 -63813087 - AluJb SINE Alu -189 123 2 1760 212 53 5 chr15 21882814 21883229 -63812525 + L1MB2 LINE L1 5729 6163 -8 190 298 18 0 chr15 21883309 21883366 -63812388 + L2 LINE L2 2299 2356 -958 1199 176 96 58 chr15 21884100 21884413 -63811341 + MER2 DNA MER2_type 1 325 -20 2484 134 48 71 chr15 21884441 21884963 -63810791 - LTR54 LTR ERV1 0 510 1 365 298 65 0 chr15 21885100 21885224 -63810530 - MIR SINE MIR -109 153 22 4725 123 67 64 chr15 21885558 21887180 -63808574 + pTR5 LTR ERV1 65 2428 -10 1603 140 0 37 chr15 21887323 21887595 -63808159 + AluSx SINE Alu 1 262 -50 2927 69 3 0 chr15 21888515 21888891 -63806863 + L1PA8 LINE L1 5793 6169 -3 569 39 0 13 chr15 21889020 21889097 -63806657 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 518 264 138 11 chr15 21889175 21889349 -63806405 + MIR SINE MIR 62 257 -5 229 329 27 0 chr15 21889886 21889959 -63805795 + MIR SINE MIR 70 144 -118 2077 110 3 0 chr15 21890037 21890327 -63805427 - AluSx SINE Alu -19 293 3 237 108 0 0 chr15 21890457 21890494 -63805260 + (CTA)n Simple_repeat Simple_repeat 1 37 0 2058 100 0 0 chr15 21893111 21893432 -63802322 + AluSx SINE Alu 1 321 0 245 171 0 0 chr15 21893644 21893685 -63802069 - MLT2B1 LTR ERVL 0 520 480 198 103 0 0 chr15 21893685 21893714 -63802040 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1432 135 127 4 chr15 21893723 21893967 -63801787 - MLT2C2 LTR ERVL -190 274 1 413 329 72 66 chr15 21894349 21894668 -63801086 - L2 LINE L2 -5 3267 2947 832 199 60 12 chr15 21894999 21895165 -63800589 + AluJo SINE Alu 124 297 -15 22 0 0 0 chr15 21895436 21895458 -63800296 + AT_rich Low_complexity Low_complexity 1 22 0 773 148 0 8 chr15 21895458 21895580 -63800174 - FLAM_C SINE Alu -12 121 1 1644 213 45 26 chr15 21895726 21896153 -63799601 + L1MB2 LINE L1 5729 6163 -8 190 298 18 0 chr15 21896232 21896289 -63799465 + L2 LINE L2 2299 2356 -958 1199 176 96 58 chr15 21897023 21897336 -63798418 + MER2 DNA MER2_type 1 325 -20 2440 138 48 71 chr15 21897364 21897886 -63797868 - LTR54 LTR ERV1 0 510 1 365 298 65 0 chr15 21898023 21898147 -63797607 - MIR SINE MIR -109 153 22 1642 121 0 37 chr15 21898628 21898900 -63796854 + AluJb SINE Alu 1 262 -50 329 57 0 19 chr15 21898940 21898993 -63796761 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2870 79 3 0 chr15 21899852 21900231 -63795523 + L1PA8 LINE L1 5793 6172 0 348 111 0 0 chr15 21900360 21900414 -63795340 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 538 263 158 11 chr15 21900477 21900667 -63795087 + MIR SINE MIR 40 257 -5 235 329 27 0 chr15 21901199 21901272 -63794482 + MIR SINE MIR 70 144 -118 215 239 43 0 chr15 21901287 21901333 -63794421 + L2 LINE L2 3210 3257 -15 2247 99 3 0 chr15 21901352 21901655 -63794099 - AluSx SINE Alu -6 306 3 237 108 0 0 chr15 21901789 21901826 -63793928 + (CTA)n Simple_repeat Simple_repeat 1 37 0 2186 113 0 0 chr15 21904441 21904752 -63791002 + AluSx SINE Alu 1 311 -1 245 171 0 0 chr15 21904951 21904992 -63790762 - MLT2B1 LTR ERVL 0 520 480 198 103 0 0 chr15 21904992 21905021 -63790733 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1399 143 127 4 chr15 21905030 21905274 -63790480 - MLT2C2 LTR ERVL -190 274 1 413 329 72 66 chr15 21905656 21905975 -63789779 - L2 LINE L2 -5 3267 2947 604 269 94 34 chr15 21906835 21906893 -63788861 - MIR SINE MIR -8 254 201 1829 165 3 0 chr15 21906893 21907202 -63788552 - AluSx SINE Alu 0 312 3 604 269 94 34 chr15 21907202 21907377 -63788377 - MIR SINE MIR -61 201 7 1845 134 16 39 chr15 21907463 21907769 -63787985 + AluSx SINE Alu 1 299 -13 1890 159 10 0 chr15 21907921 21908222 -63787532 + AluJo SINE Alu 1 304 -8 1989 125 0 10 chr15 21908448 21908745 -63787009 - AluSx SINE Alu -18 294 1 2128 129 0 0 chr15 21908936 21909245 -63786509 + AluSx SINE Alu 1 309 -3 794 99 0 0 chr15 21909305 21909416 -63786338 - HY1 scRNA scRNA -1 111 1 188 151 0 151 chr15 21909428 21909481 -63786273 - MIR SINE MIR -14 248 204 261 344 104 0 chr15 21909663 21909788 -63785966 + MIR SINE MIR 113 250 -12 1028 171 0 17 chr15 21910633 21910808 -63784946 + AluJb SINE Alu 5 176 -136 1214 146 45 5 chr15 21910824 21911023 -63784731 - MER61E LTR ERV1 -22 547 341 375 191 31 71 chr15 21911072 21911200 -63784554 - MER61E LTR ERV1 -380 189 75 681 157 9 0 chr15 21911203 21911311 -63784443 - LTR25 LTR ERV1 -438 356 248 396 235 67 27 chr15 21911299 21911448 -63784306 - MER61E LTR ERV1 -413 156 2 * 891 129 0 7 chr15 21911448 21911588 -63784166 + AluJb SINE Alu 172 310 -2 280 186 14 43 chr15 21911631 21911701 -63784053 + L1ME2 LINE L1 5726 5793 -371 1420 194 20 31 chr15 21911782 21912076 -63783678 - AluJo SINE Alu -21 291 1 800 128 0 60 chr15 21912091 21912224 -63783530 - FLAM_C SINE Alu -18 125 1 965 201 4 64 chr15 21912231 21912480 -63783274 + L1ME2 LINE L1 5831 6064 -100 306 253 25 139 chr15 21912541 21912786 -63782968 + L1MC4 LINE L1 7826 8042 0 306 286 29 38 chr15 21914080 21914185 -63781569 + MIR SINE MIR 38 141 -121 317 258 0 43 chr15 21914222 21914315 -63781439 - MIR SINE MIR -26 236 148 810 246 22 6 chr15 21914906 21915089 -63780665 + MIR SINE MIR 65 250 -12 351 271 28 94 chr15 21916377 21916558 -63779196 + MIR SINE MIR 34 202 -60 2146 88 0 3 chr15 21916945 21917268 -63778486 + AluY SINE Alu 1 322 0 849 233 38 42 chr15 21917400 21917640 -63778114 + MIR SINE MIR 24 262 0 1948 137 3 3 chr15 21918094 21918387 -63777367 + AluJb SINE Alu 1 293 -19 2030 142 0 3 chr15 21918428 21918737 -63777017 + AluSx SINE Alu 2 309 -3 239 97 0 0 chr15 21918799 21918830 -63776924 - Alu SINE Alu -60 239 209 301 255 227 93 chr15 21919384 21919521 -63776233 - L1ME4a LINE L1 -82 6039 5922 2126 121 0 0 chr15 21919521 21919819 -63775935 + AluSx SINE Alu 1 298 -14 301 255 227 93 chr15 21919819 21919897 -63775857 - L1ME4a LINE L1 -199 5922 5795 288 266 177 9 chr15 21920485 21920598 -63775156 - L2 LINE L2 -7 3265 3134 249 57 0 0 chr15 21920891 21920926 -63774828 + (TG)n Simple_repeat Simple_repeat 2 36 0 1227 105 139 38 chr15 21920970 21921179 -63774575 + MER30 DNA MER1_type 1 230 0 201 355 64 0 chr15 21922140 21922250 -63773504 - MIR SINE MIR 0 262 146 229 222 0 0 chr15 21922800 21922845 -63772909 - L2 LINE L2 -18 3295 3251 2226 84 3 0 chr15 21924772 21925068 -63770686 + AluY SINE Alu 1 297 -14 220 179 0 0 chr15 21925069 21925108 -63770646 + GA-rich Low_complexity Low_complexity 1 39 0 495 285 24 30 chr15 21927447 21927612 -63768142 - MIR3 SINE MIR -15 193 30 1195 176 34 42 chr15 21928974 21929213 -63766541 - AluJo SINE Alu -75 237 1 300 221 142 35 chr15 21929224 21929337 -63766417 - L1MC5 LINE L1 -370 7591 7467 323 276 44 82 chr15 21929400 21929719 -63766035 - L1ME4a LINE L1 -218 5903 5597 204 283 57 0 chr15 21929915 21929968 -63765786 + MIR SINE MIR 87 142 -66 1872 138 20 3 chr15 21931077 21931373 -63764381 - AluSx SINE Alu -11 301 1 2721 150 53 0 chr15 21931500 21931934 -63763820 - MSTB2 LTR MaLR 0 457 1 287 314 51 8 chr15 21932816 21932934 -63762820 + MIR SINE MIR 69 191 -71 193 281 105 0 chr15 21933022 21933079 -63762675 + MIR3 SINE MIR 125 187 -21 276 203 0 17 chr15 21933403 21933462 -63762292 + L2 LINE L2 3202 3259 -13 1129 116 0 29 chr15 21933910 21934082 -63761672 - AluSg/x SINE Alu -9 301 135 666 267 20 0 chr15 21934205 21934355 -63761399 - MIR SINE MIR -17 245 93 2200 70 30 7 chr15 21935292 21935592 -63760162 + AluY SINE Alu 1 307 -4 781 102 8 0 chr15 21935607 21935725 -63760029 + L1PA8 LINE L1 6054 6172 0 2162 220 90 13 chr15 21935785 21936462 -63759292 - L1M4 LINE L1 -1311 4835 4107 2415 46 0 13 chr15 21936474 21936777 -63758977 - AluY SINE Alu -12 299 1 2942 170 32 4 chr15 21936784 21937277 -63758477 - L1P3 LINE L1 -5367 508 2 920 212 145 113 chr15 21937818 21937889 -63757865 - MLT2B1 LTR ERVL 0 520 453 345 62 0 0 chr15 21937889 21937937 -63757817 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 920 212 145 113 chr15 21937937 21937960 -63757794 - MLT2B1 LTR ERVL -67 453 432 2351 78 0 10 chr15 21937960 21938267 -63757487 + AluY SINE Alu 1 304 -7 920 212 145 113 chr15 21938267 21938675 -63757079 - MLT2B1 LTR ERVL -88 432 1 204 296 0 19 chr15 21938897 21938951 -63756803 - MIR SINE MIR -96 166 114 410 304 0 37 chr15 21939266 21939401 -63756353 + MIR3 SINE MIR 78 207 -1 342 258 97 32 chr15 21940137 21940261 -63755493 + L1ME4a LINE L1 5976 6107 -14 181 281 0 62 chr15 21941132 21941196 -63754558 - MIR SINE MIR -111 151 92 267 311 34 0 chr15 21941202 21941321 -63754433 - LTR16A1 LTR ERVL -26 431 309 2037 146 27 29 chr15 21941321 21941697 -63754057 + THE1C LTR MaLR 1 375 0 2462 52 3 0 chr15 21941857 21942162 -63753592 - AluY SINE Alu -5 306 1 309 317 57 32 chr15 21942285 21942408 -63753346 + L2 LINE L2 3180 3305 -8 347 333 0 0 chr15 21943873 21943969 -63751785 - MIR3 SINE MIR -32 176 81 340 226 33 30 chr15 21944196 21944301 -63751453 - MIR SINE MIR -64 144 59 372 308 57 34 chr15 21944620 21944883 -63750871 - HAL1 LINE L1 -17 2490 2222 379 272 58 69 chr15 21944954 21945127 -63750627 - HAL1b LINE L1 -428 920 750 2445 97 0 0 chr15 21945491 21945799 -63749955 - AluSg SINE Alu -2 308 1 835 283 116 27 chr15 21946138 21946551 -63749203 - LTR16A LTR ERVL 0 450 1 485 320 53 0 chr15 21946653 21946803 -63748951 - MER91A DNA MER1_type -19 177 20 691 179 152 7 chr15 21947818 21947969 -63747785 + MLT1B LTR MaLR 1 173 -217 671 313 61 8 chr15 21948067 21948313 -63747441 + LTR16C LTR ERVL 230 488 -3 270 324 89 28 chr15 21949168 21949347 -63746407 + MIR SINE MIR 20 209 -53 1296 180 129 37 chr15 21949355 21949788 -63745966 - Charlie4a DNA MER1_type -2 506 34 706 194 15 112 chr15 21950270 21950466 -63745288 - MER63A DNA MER1_type -33 177 1 541 117 96 0 chr15 21950808 21950902 -63744852 - MER58 DNA MER1_type 0 2420 2318 462 204 71 0 chr15 21951253 21951351 -63744403 - MER103 DNA DNA -49 117 13 2302 41 7 17 chr15 21951735 21952026 -63743728 - L1PA4 LINE L1 -1 6154 5867 202 135 27 0 chr15 21952063 21952100 -63743654 + T-rich Low_complexity Low_complexity 3 40 0 1519 93 28 0 chr15 21952101 21952315 -63743439 - L1PA10 LINE L1 0 6168 5949 2348 84 0 3 chr15 21952397 21952729 -63743025 - AluY SINE Alu 0 311 1 486 191 9 38 chr15 21953030 21953135 -63742619 - LTR33A LTR ERVL 0 523 422 1258 230 202 3 chr15 21953225 21953616 -63742138 - LTR50 LTR ERVL -323 472 4 249 108 0 0 chr15 21954151 21954188 -63741566 + (T)n Simple_repeat Simple_repeat 1 37 0 212 254 34 0 chr15 21954261 21954320 -63741434 + MIR SINE MIR 48 108 -154 506 316 116 4 chr15 21954809 21955034 -63740720 - MIR SINE MIR -10 252 3 325 311 175 23 chr15 21955112 21955289 -63740465 - MIR SINE MIR -12 250 47 306 148 0 0 chr15 21956673 21956727 -63739027 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 2283 108 3 6 chr15 21956792 21957106 -63738648 - AluSq SINE Alu 0 313 1 187 313 46 84 chr15 21957164 21957295 -63738459 - L2 LINE L2 0 3272 3147 946 254 24 111 chr15 21957310 21957842 -63737912 + L2 LINE L2 2826 3311 -2 2163 76 11 4 chr15 21958248 21958525 -63737229 - AluY SINE Alu -2 309 31 202 259 0 0 chr15 21958525 21958579 -63737175 + L2 LINE L2 3219 3272 0 211 369 72 38 chr15 21958612 21958848 -63736906 + L2 LINE L2 3025 3268 -4 448 251 114 75 chr15 21959069 21959141 -63736613 - L1ME4a LINE L1 -253 5868 5800 2381 76 7 3 chr15 21959141 21959442 -63736312 - AluY SINE Alu -9 302 1 448 251 114 75 chr15 21959442 21959727 -63736027 - L1ME4a LINE L1 -321 5800 5497 2311 110 0 10 chr15 21961051 21961359 -63734395 + AluSp SINE Alu 1 305 -8 247 294 130 0 chr15 21962016 21962108 -63733646 - MLT1J2 LTR MaLR -338 211 108 775 163 25 89 chr15 21962235 21962437 -63733317 - MER53 DNA DNA 0 189 1 203 147 0 0 chr15 21963470 21963504 -63732250 + (GTGTG)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chr15 21964120 21964146 -63731608 + (TG)n Simple_repeat Simple_repeat 2 27 0 1540 288 107 26 chr15 21964970 21966008 -63729746 + L2 LINE L2 2191 3313 0 2312 97 0 7 chr15 21966085 21966385 -63729369 - AluY SINE Alu -13 298 1 1451 247 46 44 chr15 21967421 21967829 -63727925 - L1MDb LINE L1 -5922 487 76 7058 82 35 22 chr15 21967829 21968823 -63726931 + LTR13 LTR ERVK 1 1007 0 1451 247 46 44 chr15 21968823 21968892 -63726862 - L1MDb LINE L1 -6333 76 9 618 299 104 24 chr15 21968969 21969297 -63726457 - ERVL LTR ERVL -1134 4630 4277 230 238 68 61 chr15 21969386 21969533 -63726221 - L1ME LINE L1 -296 5825 5678 288 261 0 0 chr15 21969639 21969704 -63726050 - MER91B DNA MER1_type -125 65 1 * 379 248 64 9 chr15 21969704 21969812 -63725942 + MIR SINE MIR 57 170 -92 251 204 0 0 chr15 21971177 21971221 -63724533 - Charlie4 DNA MER1_type -17 1944 1901 * 1505 240 63 11 chr15 21971213 21971592 -63724162 + MLT1H LTR MaLR 151 549 0 293 320 8 24 chr15 21971642 21971767 -63723987 - MLT1J2 LTR MaLR -309 141 19 410 279 104 15 chr15 21972316 21972529 -63723225 + MIR SINE MIR 19 252 -10 1080 127 0 12 chr15 21972767 21972940 -63722814 + L1MA1 LINE L1 6132 6302 0 585 315 98 28 chr15 21972945 21973484 -63722270 - L1MB2 LINE L1 -243 5928 5352 255 275 12 70 chr15 21973603 21973774 -63721980 - L1MB2 LINE L1 -1313 4833 4673 526 167 0 12 chr15 21973877 21973961 -63721793 - AluJb SINE Alu -58 254 172 386 235 67 27 chr15 21973961 21974110 -63721644 + MER61E LTR ERV1 2 156 -413 * 677 157 9 0 chr15 21974098 21974206 -63721548 + LTR25 LTR ERV1 248 356 -438 343 241 8 47 chr15 21974209 21974337 -63721417 + MER61E LTR ERV1 75 189 -380 1245 141 45 5 chr15 21974386 21974585 -63721169 + MER61E LTR ERV1 341 547 -22 2317 154 19 11 chr15 21974618 21974994 -63720760 + MER61E-int LTR ERV1 29 407 -6589 1309 96 52 9 chr15 21975096 21975325 -63720429 - MER52-int LTR ERV1 -3343 4194 3956 701 167 144 0 chr15 21975301 21975433 -63720321 - MER52-int LTR ERV1 -2294 4797 4647 * 1817 228 27 18 chr15 21975426 21975865 -63719889 - MER52-int LTR ERV1 -5789 1207 765 206 159 14 43 chr15 21976784 21976853 -63718901 + T-rich Low_complexity Low_complexity 2 68 0 11381 136 24 32 chr15 21976953 21978453 -63717301 + MER61E-int LTR ERV1 2152 3662 -3334 2366 78 3 0 chr15 21978453 21978747 -63717007 + AluY SINE Alu 1 295 -16 11381 136 24 32 chr15 21978747 21979587 -63716167 + MER61E-int LTR ERV1 3662 6995 -1 475 169 0 119 chr15 21979589 21979707 -63716047 + MER61E LTR ERV1 1 104 -465 * 675 157 9 0 chr15 21979694 21979802 -63715952 + LTR25 LTR ERV1 248 356 -438 362 204 8 39 chr15 21979805 21979931 -63715823 + MER61E LTR ERV1 93 189 -380 472 105 9 114 chr15 21979984 21980089 -63715665 + MER61E LTR ERV1 341 434 -135 518 152 9 29 chr15 21980211 21980316 -63715438 + LTR25-int LTR ERV1 627 729 -6267 2463 90 3 0 chr15 21980350 21980660 -63715094 - AluY SINE Alu 0 311 1 414 314 11 29 chr15 21980681 21980856 -63714898 - LTR57-int LTR ERVL -3846 1497 1326 * 568 112 15 199 chr15 21980761 21980957 -63714797 - MER31-int LTR ERV1 -3250 1686 1527 11479 28 5 0 chr15 21981579 21982923 -63712831 - L1PA3 LINE L1 -1559 4587 3237 7216 26 0 0 chr15 21982923 21984370 -63711384 + L1PA3 LINE L1 4560 6006 -149 211 232 18 0 chr15 21984512 21984568 -63711186 + MIR SINE MIR 156 212 -50 679 254 38 42 chr15 21985075 21985311 -63710443 + MIR SINE MIR 24 258 -4 2033 141 3 3 chr15 21985770 21986060 -63709694 + AluJb SINE Alu 1 290 -22 2078 130 31 3 chr15 21986103 21986396 -63709358 + AluSx SINE Alu 1 301 -11 657 114 0 0 chr15 21986446 21986534 -63709220 - AluSg/x SINE Alu -14 296 209 2288 101 7 0 chr15 21987212 21987500 -63708254 + AluSx SINE Alu 1 290 -22 241 274 177 9 chr15 21988159 21988272 -63707482 - L2 LINE L2 -7 3265 3134 183 42 0 0 chr15 21988581 21988605 -63707149 + (TG)n Simple_repeat Simple_repeat 2 25 0 1228 105 139 38 chr15 21988644 21988853 -63706901 + MER30 DNA MER1_type 1 230 0 180 0 0 0 chr15 21988981 21989001 -63706753 + (T)n Simple_repeat Simple_repeat 1 20 0 2285 71 0 14 chr15 21989327 21989623 -63706131 - AluY SINE Alu 0 311 20 199 244 0 0 chr15 21990788 21990833 -63704921 - L2 LINE L2 -18 3295 3251 220 179 0 0 chr15 21992753 21992792 -63702962 + GA-rich Low_complexity Low_complexity 1 39 0 423 231 39 58 chr15 21995166 21995322 -63700432 - MIR3 SINE MIR -26 182 30 1216 171 34 42 chr15 21996681 21996920 -63698834 - AluJo SINE Alu -75 237 1 282 313 57 12 chr15 21997107 21997353 -63698401 - L1ME4a LINE L1 -218 5903 5647 216 264 57 0 chr15 21997646 21997699 -63698055 + MIR SINE MIR 87 142 -66 1883 135 24 3 chr15 21998798 21999095 -63696659 - AluSx SINE Alu -9 303 1 2761 145 53 0 chr15 21999222 21999656 -63696098 - MSTB2 LTR MaLR 0 457 1 287 314 51 8 chr15 22000538 22000656 -63695098 + MIR SINE MIR 69 191 -71 193 281 105 0 chr15 22000744 22000801 -63694953 + MIR3 SINE MIR 125 187 -21 271 203 0 17 chr15 22001125 22001184 -63694570 + L2 LINE L2 3202 3259 -13 1207 105 0 28 chr15 22001630 22001811 -63693943 - AluSg/x SINE Alu 0 310 135 675 273 19 0 chr15 22001933 22002087 -63693667 - MIR SINE MIR -19 243 87 339 146 0 0 chr15 22003018 22003066 -63692688 + Alu SINE Alu 1 48 -252 605 203 0 17 chr15 22003208 22003326 -63692428 + FRAM SINE Alu 1 110 -66 353 207 341 0 chr15 22003392 22003527 -63692227 - MER5A DNA MER1_type 0 189 9 220 226 148 58 chr15 22003947 22004102 -63691652 - L2 LINE L2 -185 3087 2919 22 0 0 0 chr15 22004199 22004221 -63691533 + AT_rich Low_complexity Low_complexity 1 22 0 1525 194 61 0 chr15 22004431 22004709 -63691045 - AluJo SINE Alu -6 296 2 830 155 0 8 chr15 22004721 22004850 -63690904 - FLAM_C SINE Alu -5 128 1 190 343 45 0 chr15 22004914 22004981 -63690773 + L2 LINE L2 3202 3271 -1 780 166 0 29 chr15 22005170 22005309 -63690445 + FLAM_C SINE Alu 2 136 -7 39 24 0 0 chr15 22005573 22005614 -63690140 + AT_rich Low_complexity Low_complexity 1 41 0 22 65 0 0 chr15 22005629 22005660 -63690094 + AT_rich Low_complexity Low_complexity 1 31 0 2221 104 0 0 chr15 22005686 22005993 -63689761 - AluSx SINE Alu -5 307 1 777 210 19 0 chr15 22005993 22006155 -63689599 - L1MC4 LINE L1 -1094 6948 6784 1678 167 3 10 chr15 22006179 22006473 -63689281 - AluJb SINE Alu -20 292 1 328 305 30 8 chr15 22006582 22006713 -63689041 - L1ME LINE L1 -420 5701 5568 219 324 80 6 chr15 22006721 22006897 -63688857 + L2 LINE L2 1885 2073 -1241 23 0 0 0 chr15 22006907 22006930 -63688824 + AT_rich Low_complexity Low_complexity 1 23 0 403 143 29 14 chr15 22006930 22007000 -63688754 - MER66A LTR ERV1 -128 350 280 381 234 0 11 chr15 22007342 22007436 -63688318 + Charlie8 DNA MER1_type 56 148 -2269 2132 104 14 0 chr15 22007439 22007736 -63688018 - AluSx SINE Alu -11 301 1 630 259 80 24 chr15 22008528 22008740 -63687014 + MIR SINE MIR 39 262 0 1764 124 3 109 chr15 22008755 22008891 -63686863 + AluJo SINE Alu 1 85 -217 1740 170 14 0 chr15 22008891 22009180 -63686574 - AluSx SINE Alu -19 293 1 1764 124 3 109 chr15 22009180 22009365 -63686389 + AluJo SINE Alu 85 288 -14 308 102 17 0 chr15 22009645 22009704 -63686050 - L1PA16 LINE L1 0 6166 6107 207 345 0 0 chr15 22009929 22009987 -63685767 - MIR SINE MIR -118 144 87 312 292 8 17 chr15 22010586 22010622 -63685132 + GA-rich Low_complexity Low_complexity 2 37 -83 2311 100 0 0 chr15 22010622 22010933 -63684821 + AluSq SINE Alu 1 311 -2 312 292 8 17 chr15 22010933 22011016 -63684738 + GA-rich Low_complexity Low_complexity 37 120 0 830 203 0 51 chr15 22011053 22011230 -63684524 + FRAM SINE Alu 8 175 -1 286 209 154 11 chr15 22011781 22011872 -63683882 - L2 LINE L2 -1 3312 3209 2244 70 0 7 chr15 22011875 22012173 -63683581 - AluY SINE Alu -15 296 1 1429 267 58 27 chr15 22012173 22012689 -63683065 - L1MC4 LINE L1 -365 7677 7146 2123 107 205 100 chr15 22012689 22013211 -63682543 - MER4A LTR ERV1 0 664 88 458 85 0 0 chr15 22013211 22013270 -63682484 + Alu SINE Alu 1 59 -259 1404 156 0 12 chr15 22013382 22013625 -63682129 + AluJb SINE Alu 64 303 -9 277 139 0 0 chr15 22013625 22013668 -63682086 - MER4A LTR ERV1 -575 89 47 1250 199 70 50 chr15 22013668 22013847 -63681907 - L1MC4 LINE L1 -910 7132 6958 2242 101 0 0 chr15 22013847 22014154 -63681600 - AluSx SINE Alu -5 307 1 1250 199 70 50 chr15 22014154 22014316 -63681438 - L1MC4 LINE L1 -1084 6958 6784 1678 167 3 10 chr15 22014340 22014634 -63681120 - AluJb SINE Alu -20 292 1 328 305 30 8 chr15 22014743 22014874 -63680880 - L1ME LINE L1 -420 5701 5568 219 324 80 6 chr15 22014882 22015058 -63680696 + L2 LINE L2 1885 2073 -1241 23 0 0 0 chr15 22015068 22015091 -63680663 + AT_rich Low_complexity Low_complexity 1 23 0 403 143 29 14 chr15 22015091 22015161 -63680593 - MER66A LTR ERV1 -128 350 280 381 234 0 11 chr15 22015503 22015597 -63680157 + Charlie8 DNA MER1_type 45 137 -2280 762 222 65 15 chr15 22015600 22015861 -63679893 - AluSx SINE Alu -12 300 27 303 247 89 57 chr15 22015967 22016125 -63679629 - L1 LINE L1 -2910 3236 3074 303 119 17 0 chr15 22016329 22016388 -63679366 + L1PA16 LINE L1 6107 6166 0 1244 130 0 11 chr15 22016668 22016853 -63678901 - AluJo SINE Alu -24 288 106 2275 67 0 13 chr15 22016858 22017158 -63678596 + AluY SINE Alu 6 301 -10 315 260 45 65 chr15 22017198 22017352 -63678402 + Charlie8 DNA MER1_type 378 528 -1889 832 185 20 0 chr15 22017364 22017515 -63678239 + FRAM SINE Alu 21 174 -2 23 0 0 0 chr15 22018326 22018349 -63677405 + AT_rich Low_complexity Low_complexity 1 23 0 802 128 30 37 chr15 22018358 22018522 -63677232 + AluSg/x SINE Alu 127 289 -21 2421 49 0 13 chr15 22019037 22019342 -63676412 + AluY SINE Alu 1 301 -10 315 260 45 65 chr15 22019382 22019536 -63676218 + Charlie8 DNA MER1_type 378 528 -1889 805 191 20 0 chr15 22019547 22019694 -63676060 + FRAM SINE Alu 21 170 -6 23 0 0 0 chr15 22020503 22020526 -63675228 + AT_rich Low_complexity Low_complexity 1 23 0 1107 122 17 0 chr15 22020535 22020715 -63675039 + AluSg/x SINE Alu 129 311 -1 669 0 0 0 chr15 22021023 22021095 -63674659 - tRNA-His-CAC tRNA tRNA -3 72 1 214 200 62 154 chr15 22021685 22021815 -63673939 + L2 LINE L2 3146 3263 -9 1581 67 0 10 chr15 22022187 22022395 -63673359 + AluSg/x SINE Alu 99 304 -6 669 0 0 0 chr15 22022813 22022885 -63672869 - tRNA-His-CAC tRNA tRNA -3 72 1 669 0 0 0 chr15 22023551 22023623 -63672131 + tRNA-His-CAC tRNA tRNA 1 72 -3 1951 125 16 3 chr15 22024503 22024806 -63670948 + AluJb SINE Alu 1 307 -5 1913 159 0 0 chr15 22025283 22025579 -63670175 + AluJb SINE Alu 1 296 -16 797 162 0 0 chr15 22026439 22026556 -63669198 + FLAM_C SINE Alu 1 117 -26 785 262 52 26 chr15 22026568 22026801 -63668953 + MIR SINE MIR 3 241 -21 385 273 58 78 chr15 22026822 22027318 -63668436 + MARNA DNA Mariner 9 578 -8 304 267 164 27 chr15 22027366 22027512 -63668242 + MER5A DNA MER1_type 24 189 0 531 138 0 0 chr15 22027855 22027942 -63667812 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 212 51 0 51 chr15 22028471 22028510 -63667244 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1740 111 0 0 chr15 22028525 22028760 -63666994 - AluSx SINE Alu -77 235 1 848 144 0 0 chr15 22029262 22029394 -63666360 + AluSg/x SINE Alu 170 301 -11 896 126 0 0 chr15 22029500 22029627 -63666127 + AluSx SINE Alu 41 167 -145 191 292 0 0 chr15 22029917 22029965 -63665789 - L2 LINE L2 -575 2739 2692 3028 154 116 21 chr15 22030217 22030311 -63665443 - LTR51 LTR ERV1 0 671 587 2004 147 0 0 chr15 22030311 22030623 -63665131 - AluJo SINE Alu 0 312 1 3028 154 116 21 chr15 22030623 22031139 -63664615 - LTR51 LTR ERV1 -84 587 3 2135 87 40 3 chr15 22031379 22031677 -63664077 + AluY SINE Alu 3 311 0 1268 95 0 0 chr15 22031680 22031848 -63663906 + AluSg/x SINE Alu 126 293 -17 2288 191 10 125 chr15 22032016 22032065 -63663689 + MLT1F1 LTR MaLR 16 69 -498 1042 171 6 0 chr15 22032065 22032229 -63663525 + FAM SINE Alu 1 165 -10 2288 191 10 125 chr15 22032229 22032249 -63663505 + MLT1F1 LTR MaLR 69 90 -477 2073 119 0 3 chr15 22032249 22032552 -63663202 + AluSq SINE Alu 1 302 -11 2288 191 10 125 chr15 22032552 22033007 -63662747 + MLT1F1 LTR MaLR 90 596 29 2093 120 3 10 chr15 22033007 22033308 -63662446 + AluSx SINE Alu 1 299 -13 2288 191 10 125 chr15 22033308 22033325 -63662429 + MLT1F1 LTR MaLR 596 481 -86 2061 102 3 26 chr15 22033325 22033629 -63662125 + AluSx SINE Alu 1 297 -15 2288 191 10 125 chr15 22033629 22033708 -63662046 + MLT1F1 LTR MaLR 480 567 0 406 178 169 17 chr15 22033708 22033826 -63661928 + MLT1F1-int LTR MaLR 1 136 -1235 829 280 29 32 chr15 22033866 22034177 -63661577 + MLT1F1-int LTR MaLR 302 611 -760 823 207 17 17 chr15 22034195 22034369 -63661385 - FRAM SINE Alu -5 171 1 254 313 93 16 chr15 22034578 22034760 -63660994 + MLT1F1-int LTR MaLR 697 892 -479 345 275 83 47 chr15 22035074 22035267 -63660487 + MLT1F1-int LTR MaLR 1129 1328 -43 1228 207 96 32 chr15 22035302 22035582 -63660172 + MLT1F1 LTR MaLR 3 300 -267 2210 102 3 0 chr15 22035620 22035915 -63659839 - AluSp SINE Alu -17 296 1 1800 203 100 48 chr15 22035918 22036089 -63659665 - L1M4 LINE L1 -1141 5005 4844 1659 134 3 96 chr15 22036089 22036432 -63659322 + AluJb SINE Alu 1 311 -1 1800 203 100 48 chr15 22036432 22036871 -63658883 - L1M4 LINE L1 -1302 4844 4363 1632 205 73 9 chr15 22036858 22037283 -63658471 - L1MCa LINE L1 -3294 2921 2470 * 2119 73 10 23 chr15 22037462 22037762 -63657992 + AluSc SINE Alu 1 296 -13 227 200 17 17 chr15 22037826 22037886 -63657868 + (CCG)n Simple_repeat Simple_repeat 2 61 0 21 0 0 0 chr15 22038614 22038635 -63657119 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 22038838 22038866 -63656888 + AT_rich Low_complexity Low_complexity 1 28 0 462 181 30 136 chr15 22038866 22038928 -63656826 - L1MCa LINE L1 -3746 2469 2402 1862 110 0 63 chr15 22038928 22039245 -63656509 - AluSx SINE Alu -14 298 2 1612 162 48 0 chr15 22039246 22039518 -63656236 - AluJo SINE Alu -22 290 6 462 181 30 136 chr15 22039518 22039610 -63656144 - L1MCa LINE L1 -3813 2402 2336 1732 137 48 7 chr15 22039610 22039903 -63655851 - AluJo SINE Alu -7 305 1 462 181 30 136 chr15 22039903 22039944 -63655810 - L1MCa LINE L1 -3879 2336 2292 2039 108 0 4 chr15 22039948 22040226 -63655528 + AluSg SINE Alu 1 277 -33 231 61 0 0 chr15 22040226 22040259 -63655495 + (CA)n Simple_repeat Simple_repeat 1 33 0 522 203 198 9 chr15 22040260 22040477 -63655277 - L1MCa LINE L1 -4798 1417 1160 861 131 54 42 chr15 22040477 22040645 -63655109 - AluJb SINE Alu -16 296 127 305 196 0 0 chr15 22040663 22040714 -63655040 + L1MC4 LINE L1 6653 6703 -1339 233 139 0 13 chr15 22040715 22040762 -63654992 - AluJb SINE Alu -170 132 87 304 248 105 85 chr15 22040943 22041096 -63654658 - MIR SINE MIR -28 234 79 2212 99 0 0 chr15 22041155 22041449 -63654305 - AluSx SINE Alu -18 294 1 32 26 0 0 chr15 22041472 22041511 -63654243 + AT_rich Low_complexity Low_complexity 1 39 0 842 141 0 44 chr15 22041511 22041646 -63654108 - FLAM_C SINE Alu -3 130 2 1319 238 181 11 chr15 22041667 22041835 -63653919 - L1MCa LINE L1 -5216 1180 1042 1623 192 3 10 chr15 22041835 22042143 -63653611 - AluJo SINE Alu -6 306 1 1319 238 181 11 chr15 22042143 22042412 -63653342 - L1MCa LINE L1 -5354 1042 820 2022 115 7 0 chr15 22042412 22042700 -63653054 + AluSg SINE Alu 2 291 -19 1319 238 181 11 chr15 22042700 22043054 -63652700 - L1MCa LINE L1 -5576 820 100 631 287 65 70 chr15 22043553 22043922 -63651832 - ERVL LTR ERVL -24 5740 5374 2034 107 0 20 chr15 22043922 22044221 -63651533 - AluSg SINE Alu -17 293 1 631 287 65 70 chr15 22044221 22044464 -63651290 - ERVL LTR ERVL -390 5374 5131 * 1115 245 52 10 chr15 22044454 22044760 -63650994 - ERVL LTR ERVL -1336 4428 4110 652 214 103 0 chr15 22044766 22044911 -63650843 - LTR33 LTR ERVL -357 164 5 258 229 0 33 chr15 22045189 22045250 -63650504 + L2 LINE L2 3254 3312 -1 543 189 95 61 chr15 22045568 22045635 -63650119 + MIR3 SINE MIR 17 80 -128 1137 234 83 61 chr15 22045635 22046092 -63649662 - MLT1C LTR MaLR 0 467 1 543 189 95 61 chr15 22046092 22046172 -63649582 + MIR3 SINE MIR 80 169 -39 1572 201 37 48 chr15 22047971 22048349 -63647405 - MLT1A2 LTR MaLR 0 374 1 2357 86 3 0 chr15 22048488 22048792 -63646962 + AluSg SINE Alu 1 305 -5 5465 79 20 14 chr15 22048883 22049645 -63646109 - MER4E LTR ERV1 0 766 1 1365 180 39 3 chr15 22049655 22049939 -63645815 - AluJo SINE Alu -18 294 1 3305 135 65 2 chr15 22050175 22050671 -63645083 + MER1A DNA MER1_type 1 527 0 2196 118 0 6 chr15 22050736 22051050 -63644704 - AluSx SINE Alu 0 312 1 239 296 120 9 chr15 22051292 22051400 -63644354 - MIR SINE MIR -133 129 10 202 125 42 21 chr15 22051730 22051778 -63643976 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 1103 227 84 28 chr15 22051818 22052139 -63643615 - MER2 DNA MER2_type 0 345 7 360 251 86 56 chr15 22052236 22052437 -63643317 - L1ME LINE L1 -315 5806 5606 422 275 88 47 chr15 22052771 22052942 -63642812 - L1ME4a LINE L1 -9 6112 5935 2005 142 0 3 chr15 22053079 22053390 -63642364 - AluSx SINE Alu -2 310 1 1619 183 14 0 chr15 22053467 22053757 -63641997 - AluJo SINE Alu -18 294 1 395 219 185 8 chr15 22053783 22053902 -63641852 - L1ME4a LINE L1 0 6121 5982 377 263 85 0 chr15 22053903 22054021 -63641733 - L1ME4a LINE L1 -424 5697 5570 337 193 72 72 chr15 22054042 22054125 -63641629 - L1ME4a LINE L1 -298 5823 5741 180 318 16 0 chr15 22054581 22054644 -63641110 + L2 LINE L2 2996 3059 -213 285 306 49 42 chr15 22054696 22054840 -63640914 - L2 LINE L2 -4 3309 3165 628 278 107 9 chr15 22055067 22055283 -63640471 + MIR SINE MIR 20 256 -6 396 357 6 20 chr15 22055381 22055410 -63640344 - MIR3 SINE MIR -22 186 158 1820 113 6 91 chr15 22055410 22055739 -63640015 - AluSx SINE Alu -11 301 1 396 357 6 20 chr15 22055739 22055878 -63639876 - MIR3 SINE MIR -50 158 20 202 204 45 0 chr15 22056368 22056412 -63639342 - MIR SINE MIR -26 236 191 210 308 31 0 chr15 22056444 22056509 -63639245 + MIR SINE MIR 1 67 -195 1389 167 46 4 chr15 22056512 22056752 -63639002 + AluJo SINE Alu 47 296 -16 560 268 119 12 chr15 22056753 22056939 -63638815 + MIR SINE MIR 56 261 -1 275 241 232 54 chr15 22056947 22057188 -63638566 + L2 LINE L2 3026 3309 -4 * 548 271 124 0 chr15 22057183 22057360 -63638394 - MIR SINE MIR -62 200 2 3064 114 45 0 chr15 22057381 22057897 -63637857 + L1MA2 LINE L1 5665 6203 -101 407 286 71 8 chr15 22059412 22059538 -63636216 - MIR3 SINE MIR -65 143 10 1860 201 75 32 chr15 22059666 22060133 -63635621 + L1ME2 LINE L1 5613 6099 -65 692 161 9 9 chr15 22060241 22060353 -63635401 + MER81 DNA DNA 1 112 -2 1102 239 128 21 chr15 22063504 22063926 -63631828 + MER113 DNA MER1_type? 55 521 0 547 221 41 0 chr15 22065400 22065522 -63630232 + L2 LINE L2 3187 3313 0 1876 163 0 3 chr15 22065785 22066091 -63629663 - AluJo SINE Alu -7 305 1 2530 46 0 0 chr15 22066093 22066397 -63629357 - AluY SINE Alu -7 304 1 336 363 56 6 chr15 22068586 22068746 -63627008 - MER91A DNA MER1_type -26 170 3 186 341 91 0 chr15 22068752 22068840 -63626914 - L2 LINE L2 -37 3276 3181 329 329 29 21 chr15 22069149 22069289 -63626465 + L3 LINE CR1 627 767 -810 2145 96 7 7 chr15 22069788 22070098 -63625656 + AluSx SINE Alu 3 312 0 211 266 165 13 chr15 22070392 22070471 -63625283 - L2 LINE L2 -18 3295 3205 2363 88 0 0 chr15 22071900 22072207 -63623547 - AluSx SINE Alu -5 307 1 693 223 4 96 chr15 22072207 22072271 -63623483 - MIR SINE MIR -10 252 184 866 174 73 17 chr15 22072271 22072449 -63623305 - MER5A DNA MER1_type 0 189 2 693 223 4 96 chr15 22072449 22072625 -63623129 - MIR SINE MIR -78 184 33 2202 113 0 22 chr15 22074649 22075006 -63620748 + AluSx SINE Alu 1 350 0 387 289 255 0 chr15 22075658 22075866 -63619888 + MIR SINE MIR 1 261 -1 280 283 114 66 chr15 22079126 22079292 -63616462 + MIR SINE MIR 31 204 -58 348 327 27 0 chr15 22084483 22084593 -63611161 - MIR SINE MIR -56 206 94 681 92 61 0 chr15 22084677 22084775 -63610979 + FLAM_C SINE Alu 17 120 -23 201 349 165 0 chr15 22085617 22085726 -63610028 - MIR SINE MIR -63 145 19 201 290 150 10 chr15 22086571 22086671 -63609083 - MIR SINE MIR -79 129 16 204 125 0 0 chr15 22086680 22086712 -63609042 + (GA)n Simple_repeat Simple_repeat 1 32 0 215 303 15 0 chr15 22088395 22088461 -63607293 + L2 LINE L2 3175 3241 -31 2103 100 0 7 chr15 22088619 22088910 -63606844 - AluSx SINE Alu -23 289 1 1429 173 61 4 chr15 22089502 22089779 -63605975 - AluJo SINE Alu -15 297 5 445 284 9 0 chr15 22090148 22090257 -63605497 - L2 LINE L2 -11 3302 3193 548 249 17 35 chr15 22090995 22091168 -63604586 - MER104 DNA Tc2 -3 177 8 386 293 137 34 chr15 22091275 22091480 -63604274 + MIR SINE MIR 19 244 -18 1881 137 0 11 chr15 22091602 22091906 -63603848 - AluSx SINE Alu 0 301 1 258 292 143 19 chr15 22091923 22092084 -63603670 + MIR3 SINE MIR 21 201 -7 1107 309 124 28 chr15 22092321 22093184 -63602570 + L2 LINE L2 1527 2472 -842 506 332 76 54 chr15 22093302 22093751 -63602003 + L2 LINE L2 2752 3209 -63 23 0 0 0 chr15 22094102 22094125 -63601629 + AT_rich Low_complexity Low_complexity 1 23 0 221 227 0 0 chr15 22095658 22095702 -63600052 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 352 8 8 chr15 22098574 22098702 -63597052 - MIR3 SINE MIR -77 131 4 413 234 8 62 chr15 22098739 22098867 -63596887 + L2 LINE L2 3192 3312 -1 235 302 69 52 chr15 22099174 22099290 -63596464 + L2 LINE L2 3155 3272 0 2241 88 0 38 chr15 22104164 22104484 -63591270 + AluSp SINE Alu 1 308 -5 318 235 62 12 chr15 22104692 22104773 -63590981 - L1MC4 LINE L1 -1342 6700 6616 423 106 0 0 chr15 22105142 22105208 -63590546 + (TG)n Simple_repeat Simple_repeat 1 66 0 530 298 30 18 chr15 22105718 22105886 -63589868 - MIR3 SINE MIR -1 207 38 193 302 0 0 chr15 22106905 22106948 -63588806 - L2 LINE L2 -8 3305 3263 1085 284 28 22 chr15 22107240 22107698 -63588056 + Tigger8 DNA MER2_type 158 618 -48 289 279 0 13 chr15 22107805 22107884 -63587870 + MIR SINE MIR 185 262 0 288 0 0 0 chr15 22108849 22108881 -63586873 + (TG)n Simple_repeat Simple_repeat 2 33 0 2254 98 10 0 chr15 22109545 22109851 -63585903 + AluSp SINE Alu 5 313 0 380 70 0 18 chr15 22109852 22109909 -63585845 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 799 264 63 17 chr15 22110716 22110955 -63584799 + MIR SINE MIR 13 262 0 272 325 39 26 chr15 22111813 22111967 -63583787 + MIR SINE MIR 79 234 -28 2322 95 3 0 chr15 22112732 22113036 -63582718 + AluSx SINE Alu 1 305 -7 476 281 53 12 chr15 22113618 22113813 -63581941 - MIR3 SINE MIR -46 216 5 1065 166 83 45 chr15 22115564 22115829 -63579925 - ORSL DNA AcHobo 0 275 1 197 129 0 0 chr15 22116053 22116084 -63579670 + L2 LINE L2 3241 3271 -1 318 281 98 52 chr15 22116623 22116665 -63579089 - L1MC4 LINE L1 -2 8040 8001 1843 140 17 14 chr15 22116665 22116957 -63578797 + AluSx SINE Alu 1 293 -19 318 281 98 52 chr15 22116957 22117067 -63578687 - L1MC4 LINE L1 -41 8001 7881 250 236 45 11 chr15 22117275 22117364 -63578390 - L1MC5 LINE L1 -34 7927 7836 667 253 78 0 chr15 22117874 22118028 -63577726 - MER91A DNA MER1_type 0 196 31 451 258 70 128 chr15 22118383 22118712 -63577042 - L2 LINE L2 0 3272 2963 2388 84 3 0 chr15 22120039 22120347 -63575407 + AluSx SINE Alu 1 309 -3 477 0 0 0 chr15 22120594 22120647 -63575107 + (TG)n Simple_repeat Simple_repeat 2 54 0 1238 121 0 0 chr15 22120836 22121010 -63574744 + AluSg/x SINE Alu 133 306 -6 368 351 26 16 chr15 22122216 22122382 -63573372 - L2 LINE L2 0 3313 3143 2124 121 0 16 chr15 22122382 22122689 -63573065 + AluSx SINE Alu 1 302 -10 368 351 26 16 chr15 22122689 22122713 -63573041 - L2 LINE L2 -170 3143 3121 2351 87 0 0 chr15 22123531 22123830 -63571924 - AluSg SINE Alu -11 299 1 2038 151 3 0 chr15 22124637 22124948 -63570806 + AluSx SINE Alu 1 312 0 225 302 103 9 chr15 22125381 22125497 -63570257 + L3b LINE CR1 1111 1237 -346 2062 109 30 7 chr15 22125526 22125830 -63569924 + AluSx SINE Alu 1 311 -1 579 305 180 6 chr15 22126836 22126972 -63568782 - L2 LINE L2 -16 3297 3186 2055 117 10 17 chr15 22126972 22127272 -63568482 + AluSx SINE Alu 1 298 -14 579 305 180 6 chr15 22127272 22127496 -63568258 - L2 LINE L2 -127 3186 2874 388 331 37 37 chr15 22127530 22127775 -63567979 - L2 LINE L2 -550 2764 2520 2261 87 6 22 chr15 22128231 22128543 -63567211 + AluSc SINE Alu 1 307 -2 284 118 0 20 chr15 22128543 22128594 -63567160 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 1122 183 17 26 chr15 22131556 22131786 -63563968 - AluJo SINE Alu -9 303 76 272 197 182 0 chr15 22133117 22133183 -63562571 + MIR3 SINE MIR 93 170 -38 2364 45 10 3 chr15 22133234 22133525 -63562229 - AluSp SINE Alu -19 294 2 41 66 0 0 chr15 22134183 22134259 -63561495 + GC_rich Low_complexity Low_complexity 1 76 0 336 304 32 8 chr15 22137268 22137393 -63558361 + MIR SINE MIR 20 147 -115 523 294 71 5 chr15 22137553 22137728 -63558026 - MIR3 SINE MIR -7 201 12 2175 123 0 3 chr15 22137728 22138037 -63557717 - AluSq SINE Alu -1 312 5 454 205 224 32 chr15 22138592 22138748 -63557006 - MIR SINE MIR 0 262 77 289 273 52 0 chr15 22138783 22138860 -63556894 + L2 LINE L2 3138 3218 -54 252 168 42 76 chr15 22140826 22140945 -63554809 + (CAGAGA)n Simple_repeat Simple_repeat 3 117 0 2307 96 3 6 chr15 22142895 22143208 -63552546 - AluSx SINE Alu 0 312 1 2391 84 0 3 chr15 22145611 22145921 -63549833 - AluSc SINE Alu 0 309 1 419 244 59 0 chr15 22146017 22146152 -63549602 - LTR33A LTR ERVL -6 517 375 452 257 81 15 chr15 22146256 22146392 -63549362 - MIR SINE MIR -78 184 40 216 273 45 0 chr15 22147242 22147308 -63548446 + L2 LINE L2 3230 3298 -15 295 337 203 10 chr15 22147628 22147919 -63547835 + L2 LINE L2 2845 3191 -81 272 257 43 0 chr15 22148624 22148694 -63547060 + L2 LINE L2 3225 3297 -16 194 0 39 0 chr15 22148934 22148960 -63546794 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 507 237 46 53 chr15 22149405 22149557 -63546197 + MIR SINE MIR 106 256 -6 275 337 32 0 chr15 22149583 22149678 -63546076 - MIR SINE MIR -83 125 28 460 191 106 14 chr15 22149691 22149832 -63545922 - MER103 DNA DNA -10 156 3 249 264 14 28 chr15 22150202 22150274 -63545480 - L2 LINE L2 -2 3311 3241 709 303 10 15 chr15 22150286 22150484 -63545270 + MIR SINE MIR 65 261 -1 333 294 101 0 chr15 22152937 22153046 -63542708 - L2 LINE L2 -7 3265 3146 222 260 0 0 chr15 22154052 22154102 -63541652 + GA-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr15 22154586 22154608 -63541146 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr15 22154767 22154795 -63540959 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 22154850 22154871 -63540883 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 22154925 22154978 -63540776 + GC_rich Low_complexity Low_complexity 1 53 0 231 88 0 0 chr15 22155082 22155116 -63540638 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 2246 87 0 3 chr15 22156000 22156309 -63539445 + AluY SINE Alu 1 308 -3 907 304 69 33 chr15 22156314 22156574 -63539180 - ERVL LTR ERVL -2909 2855 2571 1074 218 9 13 chr15 22156574 22156799 -63538955 + MER58A DNA MER1_type 1 224 0 907 304 69 33 chr15 22156799 22156988 -63538766 - ERVL LTR ERVL -3193 2571 2390 747 223 20 0 chr15 22157067 22157215 -63538539 - AluJb SINE Alu -15 297 147 21 0 0 0 chr15 22157233 22157254 -63538500 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 22157308 22157361 -63538393 + GC_rich Low_complexity Low_complexity 1 53 0 654 304 24 34 chr15 22157979 22158028 -63537726 - ERVL LTR ERVL -344 5420 5372 2026 107 0 20 chr15 22158028 22158326 -63537428 - AluSg SINE Alu -18 292 1 654 304 24 34 chr15 22158326 22158569 -63537185 - ERVL LTR ERVL -392 5372 5131 * 1115 245 52 10 chr15 22158559 22158865 -63536889 - ERVL LTR ERVL -1336 4428 4110 652 214 103 0 chr15 22158871 22159016 -63536738 - LTR33 LTR ERVL -357 164 5 258 229 0 33 chr15 22159294 22159355 -63536399 + L2 LINE L2 3254 3312 -1 538 212 86 60 chr15 22159673 22159743 -63536011 + MIR3 SINE MIR 15 82 -126 1156 233 83 59 chr15 22159743 22160199 -63535555 - MLT1C LTR MaLR 0 467 1 538 212 86 60 chr15 22160199 22160279 -63535475 + MIR3 SINE MIR 82 169 -39 1474 201 37 48 chr15 22162073 22162451 -63533303 - MLT1A2 LTR MaLR 0 374 1 2324 89 3 0 chr15 22162590 22162893 -63532861 + AluSg SINE Alu 1 304 -6 5368 79 20 14 chr15 22162984 22163746 -63532008 - MER4E LTR ERV1 0 766 1 1755 164 14 0 chr15 22163756 22164048 -63531706 - AluJo SINE Alu -16 296 1 3232 135 65 2 chr15 22164284 22164780 -63530974 + MER1A DNA MER1_type 1 527 0 2175 118 0 6 chr15 22164837 22165151 -63530603 - AluSx SINE Alu 0 312 1 241 135 0 39 chr15 22165994 22166046 -63529708 - L1PA16 LINE L1 -10 6156 6107 207 345 0 0 chr15 22166274 22166332 -63529422 - MIR SINE MIR -118 144 87 219 69 0 0 chr15 22166388 22166417 -63529337 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 296 300 8 17 chr15 22166941 22166977 -63528777 + GA-rich Low_complexity Low_complexity 2 37 -83 2268 104 0 0 chr15 22166977 22167286 -63528468 + AluSq SINE Alu 1 309 -4 296 300 8 17 chr15 22167286 22167369 -63528385 + GA-rich Low_complexity Low_complexity 37 120 0 741 201 0 67 chr15 22167406 22167591 -63528163 + FRAM SINE Alu 8 176 0 22 0 0 0 chr15 22167999 22168021 -63527733 + AT_rich Low_complexity Low_complexity 1 22 0 1784 133 10 39 chr15 22168149 22168458 -63527296 - AluJo SINE Alu -4 308 9 191 304 7 74 chr15 22168640 22168775 -63526979 - L2 LINE L2 -200 3072 2947 180 0 0 0 chr15 22169669 22169689 -63526065 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1545 101 0 5 chr15 22169692 22169900 -63525854 - AluSg/x SINE Alu -25 287 81 4841 67 2 0 chr15 22169900 22170486 -63525268 - LTR14C LTR ERVK 0 587 1 40483 71 3 9 chr15 22170486 22175711 -63520043 - HERVK14C LTR ERVK 0 7417 2223 16512 110 11 4 chr15 22175817 22178168 -63517586 - HERVK14C LTR ERVK -3777 2348 47 664 143 15 45 chr15 22178168 22178214 -63517540 - AluSq/x SINE Alu -183 129 83 4908 55 2 2 chr15 22178214 22178801 -63516953 - LTR14C LTR ERVK 0 587 1 664 143 15 45 chr15 22178801 22178887 -63516867 - AluSq/x SINE Alu -229 83 1 542 233 73 52 chr15 22178924 22179007 -63516747 + L1MEc LINE L1 954 1034 -5171 1867 160 13 3 chr15 22179007 22179314 -63516440 + AluSx SINE Alu 1 310 -2 542 233 73 52 chr15 22179314 22179518 -63516236 + L1MEc LINE L1 1034 1223 -4982 416 236 43 32 chr15 22179538 22179667 -63516087 - AluJo SINE Alu -87 215 123 474 231 0 72 chr15 22179668 22179782 -63515972 - L1MCa LINE L1 -5327 1614 1518 2022 147 0 6 chr15 22179782 22180096 -63515658 - AluSx SINE Alu 0 312 1 474 231 0 72 chr15 22180096 22180176 -63515578 - L1MCa LINE L1 -5423 1518 1434 1008 151 0 58 chr15 22180184 22180356 -63515398 - Tigger2a DNA MER2_type -272 162 1 1819 117 3 56 chr15 22180500 22180824 -63514930 + AluSx SINE Alu 1 307 -5 976 254 181 55 chr15 22180904 22181078 -63514676 - L1MCa LINE L1 -5006 1417 1266 2504 113 52 54 chr15 22181078 22181450 -63514304 - MSTA LTR MaLR 0 428 56 1528 109 125 12 chr15 22181450 22181706 -63514048 - AluSg1 SINE Alu -24 285 1 2504 113 52 54 chr15 22181706 22181759 -63513995 - MSTA LTR MaLR -372 56 4 1520 201 0 29 chr15 22181763 22182077 -63513677 - AluJo SINE Alu -7 305 1 976 254 181 55 chr15 22182077 22182428 -63513326 - L1MCa LINE L1 -5159 1264 820 388 317 42 30 chr15 22182559 22182726 -63513028 - L1MCa LINE L1 -5842 581 413 273 46 0 127 chr15 22182915 22182978 -63512776 + FLAM_A SINE Alu 86 133 0 1083 147 6 0 chr15 22183123 22183293 -63512461 + AluJb SINE Alu 138 308 -4 2076 113 3 0 chr15 22183333 22183624 -63512130 - AluSx SINE Alu -20 292 1 2067 136 0 3 chr15 22183639 22183949 -63511805 - AluSx SINE Alu -3 309 1 403 217 35 99 chr15 22184075 22184092 -63511662 - L1ME LINE L1 -5905 300 283 1465 127 163 0 chr15 22184092 22184344 -63511410 - AluJo SINE Alu -9 293 1 403 217 35 99 chr15 22184344 22184522 -63511232 - L1ME LINE L1 -5922 283 56 278 284 46 46 chr15 22184729 22184838 -63510916 + MIR SINE MIR 45 153 -55 310 300 125 8 chr15 22184960 22185080 -63510674 + MIR SINE MIR 18 151 -57 1578 168 3 17 chr15 22185442 22185733 -63510021 + AluJo SINE Alu 5 291 -21 287 220 46 0 chr15 22185802 22185911 -63509843 + (TA)n Simple_repeat Simple_repeat 1 114 0 266 297 93 8 chr15 22186069 22186187 -63509567 - MIR SINE MIR -42 220 93 346 250 44 96 chr15 22186353 22186445 -63509309 - L2 LINE L2 -1 3271 3187 1773 160 0 16 chr15 22186445 22186751 -63509003 + AluJo SINE Alu 1 301 -11 346 250 44 96 chr15 22186751 22186794 -63508960 - L2 LINE L2 -85 3187 3143 402 348 76 27 chr15 22186879 22186949 -63508805 + L2 LINE L2 3038 3103 -169 2049 123 13 0 chr15 22186949 22187251 -63508503 - AluSx SINE Alu -6 306 1 402 348 76 27 chr15 22187251 22187404 -63508350 + L2 LINE L2 3103 3272 0 1580 142 50 4 chr15 22187609 22187890 -63507864 - AluJb SINE Alu -8 304 11 27 29 0 0 chr15 22188851 22188885 -63506869 + AT_rich Low_complexity Low_complexity 1 34 0 274 259 0 47 chr15 22190268 22190353 -63505401 - AluJ/FLAM SINE Alu -209 93 13 2032 95 37 17 chr15 22190444 22190740 -63505014 - AluSx SINE Alu -10 302 1 227 370 31 59 chr15 22191007 22191261 -63504493 + L2 LINE L2 2807 3053 -219 219 353 65 13 chr15 22191348 22191501 -63504253 + L2 LINE L2 3119 3279 -34 314 300 106 28 chr15 22191688 22191868 -63503886 - L1 LINE L1 -1152 4994 4801 1987 116 14 0 chr15 22191971 22192255 -63503499 + AluSq SINE Alu 1 288 -25 32 67 0 0 chr15 22192255 22192315 -63503439 + AT_rich Low_complexity Low_complexity 1 60 0 2507 205 116 36 chr15 22192377 22193177 -63502577 - L1ME3A LINE L1 -10 6160 5291 725 186 44 11 chr15 22193182 22193365 -63502389 + L1MA8 LINE L1 6093 6281 -10 848 152 0 0 chr15 22193368 22193500 -63502254 - AluJb SINE Alu -180 132 1 298 228 18 0 chr15 22193641 22193698 -63502056 - L2 LINE L2 0 3272 3215 281 339 141 6 chr15 22193714 22193891 -63501863 - L2 LINE L2 -33 3280 3080 443 289 20 41 chr15 22194013 22194210 -63501544 - LTR33 LTR ERVL -3 518 326 395 304 72 22 chr15 22194244 22194425 -63501329 - LTR33 LTR ERVL -328 193 4 1463 128 0 43 chr15 22194566 22194801 -63500953 + AluJo SINE Alu 58 282 -30 198 71 0 0 chr15 22194809 22194837 -63500917 + (CAAAG)n Simple_repeat Simple_repeat 3 30 0 829 267 58 0 chr15 22195282 22195522 -63500232 + MIR SINE MIR 4 257 -5 362 226 23 140 chr15 22198236 22198457 -63497297 - MER112 DNA MER1_type 0 260 66 493 306 6 35 chr15 22199940 22200110 -63495644 + MIR3 SINE MIR 44 208 0 333 300 55 9 chr15 22200846 22200956 -63494798 + L2 LINE L2 3181 3295 -18 2092 21 0 4 chr15 22202482 22202720 -63493034 + L1P1 LINE L1 5422 5658 -497 1854 134 13 43 chr15 22204213 22204535 -63491219 - AluSx SINE Alu 0 313 1 860 111 8 0 chr15 22204932 22205049 -63490705 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr15 22205049 22205070 -63490684 + AT_rich Low_complexity Low_complexity 1 21 0 198 318 83 59 chr15 22205542 22205831 -63489923 - L2 LINE L2 -670 2644 2349 846 148 0 16 chr15 22205849 22205977 -63489777 - FLAM_C SINE Alu -17 126 1 229 358 81 0 chr15 22205979 22206102 -63489652 - L2 LINE L2 -955 2359 2227 1593 151 54 12 chr15 22206103 22206223 -63489531 + AluJb SINE Alu 1 114 -198 225 0 0 0 chr15 22206223 22206248 -63489506 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1593 151 54 12 chr15 22206248 22206386 -63489368 + AluJb SINE Alu 114 270 -42 195 42 0 0 chr15 22206386 22206410 -63489344 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 983 154 108 26 chr15 22206628 22206823 -63488931 - AluJb SINE Alu -9 303 93 358 159 43 0 chr15 22207551 22207620 -63488134 + AluS SINE Alu 1 72 -227 2033 109 7 7 chr15 22209220 22209495 -63486259 + AluSg SINE Alu 2 276 -34 21 0 0 0 chr15 22209513 22209534 -63486220 + AT_rich Low_complexity Low_complexity 1 21 0 326 348 18 18 chr15 22209810 22210031 -63485723 - MER58A DNA MER1_type 0 224 4 2256 103 7 0 chr15 22210310 22210602 -63485152 - AluSx SINE Alu -16 296 3 317 143 0 0 chr15 22211073 22211122 -63484632 + AluSp SINE Alu 100 148 -155 278 323 10 10 chr15 22211152 22211251 -63484503 + L2 LINE L2 2262 2360 -954 836 186 256 12 chr15 22211371 22211613 -63484141 - AluJo SINE Alu -10 302 2 289 287 9 26 chr15 22211789 22211904 -63483850 + L2 LINE L2 2660 2772 -542 1851 97 120 0 chr15 22212325 22212592 -63483162 + AluSc SINE Alu 1 299 0 2212 117 0 0 chr15 22212922 22213222 -63482532 - AluSq SINE Alu -13 300 1 423 0 0 0 chr15 22213247 22213294 -63482460 + (TG)n Simple_repeat Simple_repeat 1 47 0 2221 100 0 10 chr15 22213294 22213575 -63482179 - AluSp SINE Alu -33 280 1 952 116 55 22 chr15 22213745 22213926 -63481828 + MER53 DNA DNA 3 189 0 500 250 17 10 chr15 22214039 22214175 -63481579 + MIR SINE MIR 7 142 -66 7804 44 1 33 chr15 22214849 22216440 -63479314 - SVA Other Other -799 1383 1 246 194 0 32 chr15 22216440 22216502 -63479252 + GA-rich Low_complexity Low_complexity 2 61 0 585 121 0 0 chr15 22216505 22216588 -63479166 - AluSg/x SINE Alu -15 297 215 2308 116 3 0 chr15 22218001 22218311 -63477443 - AluSp SINE Alu -2 311 1 34 65 0 0 chr15 22218337 22218399 -63477355 + AT_rich Low_complexity Low_complexity 1 62 0 2157 186 47 2 chr15 22218434 22218838 -63476916 - MSTB LTR MaLR -4 422 1 579 202 21 101 chr15 22219030 22219065 -63476689 + MIR SINE MIR 11 47 -215 2544 85 11 8 chr15 22219065 22219419 -63476335 + THE1A LTR MaLR 1 355 0 11892 83 2 31 chr15 22219419 22219914 -63475840 + THE1A-int LTR MaLR 1 509 -1071 2239 121 7 0 chr15 22219914 22220220 -63475534 + AluSx SINE Alu 1 308 -4 11892 83 2 31 chr15 22220220 22221026 -63474728 + THE1A-int LTR MaLR 509 1248 -332 2316 112 0 7 chr15 22221026 22221331 -63474423 - AluSq SINE Alu -10 303 1 11892 83 2 31 chr15 22221331 22221655 -63474099 + THE1A-int LTR MaLR 1248 1580 0 2259 133 8 8 chr15 22221655 22222009 -63473745 + THE1A LTR MaLR 1 354 -1 579 202 21 101 chr15 22222009 22222159 -63473595 + MIR SINE MIR 44 183 -79 183 42 0 0 chr15 22222350 22222374 -63473380 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1051 155 7 0 chr15 22222374 22222529 -63473225 - AluJb SINE Alu -23 289 134 1659 165 10 30 chr15 22222529 22222832 -63472922 - AluJo SINE Alu -15 297 1 288 305 210 0 chr15 22222901 22223101 -63472653 - MIR SINE MIR -6 256 15 4576 188 18 23 chr15 22223993 22224034 -63471720 - L1MB5 LINE L1 0 6174 6134 1797 164 25 0 chr15 22224034 22224320 -63471434 - AluJb SINE Alu -19 293 1 4576 188 18 23 chr15 22224320 22224965 -63470789 - L1MB5 LINE L1 -40 6134 5488 207 0 0 0 chr15 22224965 22224988 -63470766 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4576 188 18 23 chr15 22224988 22225265 -63470489 - L1MB5 LINE L1 -686 5488 5211 983 154 108 26 chr15 22225582 22225777 -63469977 - AluJb SINE Alu -9 303 93 2605 50 0 0 chr15 22226494 22226796 -63468958 + AluY SINE Alu 1 302 -9 3519 39 0 0 chr15 22226924 22227334 -63468420 + L1PA3 LINE L1 5746 6155 0 185 105 0 26 chr15 22227377 22227415 -63468339 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 900 236 36 19 chr15 22227805 22228024 -63467730 + MER20 DNA MER1_type 1 219 0 47 19 0 0 chr15 22228028 22228082 -63467672 + AT_rich Low_complexity Low_complexity 1 54 0 3010 159 55 2 chr15 22228114 22228673 -63467081 + L1MB5 LINE L1 5586 6174 0 1216 14 28 0 chr15 22228689 22228830 -63466924 + AluYa5/8 SINE Alu 166 310 -1 565 307 24 6 chr15 22229036 22229202 -63466552 + MIR SINE MIR 2 170 -92 2167 150 105 0 chr15 22229233 22229613 -63466141 - MSTC LTR MaLR -8 420 1 1127 158 66 0 chr15 22230565 22230761 -63464993 - AluJb SINE Alu -6 306 98 1579 216 11 20 chr15 22230761 22231117 -63464637 + MLT1A1 LTR MaLR 13 365 0 1755 151 75 0 chr15 22231419 22231697 -63464057 - AluJb SINE Alu -13 299 1 303 230 184 0 chr15 22232786 22232873 -63462881 - MIR SINE MIR 0 262 160 498 297 69 48 chr15 22233382 22233800 -63461954 + HERV16 LTR ERVL 1 427 -4569 1696 45 0 27 chr15 22233810 22234034 -63461720 + L1PA5 LINE L1 5937 6154 0 2053 148 7 0 chr15 22234044 22234354 -63461400 + AluSq SINE Alu 1 312 -1 341 109 125 0 chr15 22234520 22234584 -63461170 + MER5A DNA MER1_type 35 106 -83 1689 125 62 18 chr15 22234607 22234902 -63460852 + AluJb SINE Alu 1 307 0 5472 55 38 30 chr15 22235252 22235817 -63459937 + MER4E LTR ERV1 1 575 -191 2359 109 0 0 chr15 22235817 22236128 -63459626 - AluSx SINE Alu -1 311 1 5472 55 38 30 chr15 22236128 22236322 -63459432 + MER4E LTR ERV1 575 766 0 2191 312 55 87 chr15 22236554 22237664 -63458090 + HERV16 LTR ERVL 1266 2410 -3354 1848 154 11 0 chr15 22237664 22237943 -63457811 + AluJo SINE Alu 14 295 -17 2191 312 55 87 chr15 22237943 22238213 -63457541 + HERV16 LTR ERVL 2410 2588 -3176 1080 218 9 13 chr15 22238213 22238438 -63457316 - MER58A DNA MER1_type 0 224 1 2191 312 55 87 chr15 22238438 22238698 -63457056 + HERV16 LTR ERVL 2588 2855 -2909 2252 112 7 0 chr15 22238703 22239006 -63456748 - AluSx SINE Alu -5 307 3 303 163 0 0 chr15 22239475 22239524 -63456230 + AluSp SINE Alu 100 148 -155 278 323 10 10 chr15 22239554 22239653 -63456101 + L2 LINE L2 2262 2360 -954 831 181 255 12 chr15 22239773 22240016 -63455738 - AluJo SINE Alu -9 303 2 220 308 142 33 chr15 22240097 22240308 -63455446 + L2 LINE L2 2539 2772 -542 327 143 0 0 chr15 22240521 22240570 -63455184 - Tigger2 DNA MER2_type -2669 49 1 2221 92 3 41 chr15 22241063 22241380 -63454374 - AluSx SINE Alu -7 305 1 1240 227 32 35 chr15 22241882 22242120 -63453634 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 22242120 22242416 -63453338 - AluSx SINE Alu -19 293 1 1240 227 32 35 chr15 22242416 22242521 -63453233 + MER2 DNA MER2_type 239 343 -1 2093 210 107 51 chr15 22243277 22243988 -63451766 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22244113 22244141 -63451613 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 22244445 22244748 -63451006 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 22245072 22245433 -63450321 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 22245433 22245724 -63450030 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 22245724 22245913 -63449841 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 22245980 22246292 -63449462 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 22246334 22246541 -63449213 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 22246616 22246718 -63449036 + L2 LINE L2 3144 3271 -1 2321 106 3 3 chr15 22247094 22247396 -63448358 - AluSx SINE Alu -10 302 1 3091 186 4 30 chr15 22247432 22248109 -63447645 - L1M4 LINE L1 -1144 5002 4343 1767 169 7 13 chr15 22248345 22248653 -63447101 - AluJo SINE Alu -6 306 1 469 310 98 12 chr15 22249138 22249641 -63446113 + HAL1 LINE L1 1 696 -1811 837 174 0 6 chr15 22249709 22249883 -63445871 - L1MB1 LINE L1 -2 6166 6020 579 206 83 122 chr15 22249902 22250198 -63445556 + HAL1 LINE L1 844 1106 -1401 1181 170 72 138 chr15 22250198 22250464 -63445290 + MER110A LTR ERV1 1 220 -248 2147 130 0 7 chr15 22250464 22250772 -63444982 - AluJo SINE Alu -5 307 2 1181 170 72 138 chr15 22250772 22251006 -63444748 + MER110A LTR ERV1 220 468 0 579 206 83 122 chr15 22251006 22251306 -63444448 + HAL1 LINE L1 1106 1416 -1091 453 215 46 39 chr15 22251716 22251846 -63443908 - L2 LINE L2 -1 3312 3182 402 176 0 0 chr15 22251860 22251945 -63443809 + (CATA)n Simple_repeat Simple_repeat 4 88 0 775 256 36 52 chr15 22252034 22252343 -63443411 - L2 LINE L2 -658 2656 2353 2237 106 0 7 chr15 22252344 22252645 -63443109 + AluSx SINE Alu 1 299 -13 1656 173 7 7 chr15 22252924 22253202 -63442552 + AluJo SINE Alu 14 291 -21 356 143 57 0 chr15 22253980 22254050 -63441704 - L1MA9 LINE L1 -87 6225 6152 1916 140 0 51 chr15 22254262 22254577 -63441177 + AluSx SINE Alu 1 299 -13 330 297 31 46 chr15 22255237 22255374 -63440380 + L1 LINE L1 4138 4272 -1874 2135 95 0 60 chr15 22255374 22255690 -63440064 + AluY SINE Alu 1 297 -14 330 297 31 46 chr15 22255690 22255780 -63439974 + L1 LINE L1 4272 4362 -1784 1691 103 140 85 chr15 22255898 22256037 -63439717 + MSTA LTR MaLR 32 162 -266 6858 61 28 9 chr15 22256037 22257092 -63438662 + L1PA8 LINE L1 5100 6171 -1 1691 103 140 85 chr15 22257092 22257281 -63438473 + MSTA LTR MaLR 162 378 -50 594 214 16 115 chr15 22257487 22257575 -63438179 + MLT1F1 LTR MaLR 7 69 -473 844 158 32 37 chr15 22257575 22257765 -63437989 - MER53 DNA DNA 0 189 1 594 214 16 115 chr15 22257765 22257858 -63437896 + MLT1F1 LTR MaLR 69 170 -372 4708 127 69 120 chr15 22257936 22259214 -63436540 + pTR5 LTR ERV1 6 581 -133 1729 197 64 12 chr15 22259214 22259559 -63436195 + MLT1F1 LTR MaLR 205 567 0 2008 118 7 0 chr15 22259756 22260086 -63435668 - AluSx SINE Alu 0 332 1 3159 200 48 17 chr15 22260103 22260745 -63435009 - L1MA9 LINE L1 -38 6274 5604 1897 150 3 7 chr15 22260745 22261039 -63434715 - AluJb SINE Alu -19 293 1 3159 200 48 17 chr15 22261039 22261141 -63434613 - L1MA9 LINE L1 -708 5604 5507 931 125 0 0 chr15 22261221 22261341 -63434413 - AluSq/x SINE Alu -192 120 1 21 57 0 0 chr15 22261612 22261647 -63434107 + AT_rich Low_complexity Low_complexity 1 35 0 360 239 182 45 chr15 22261870 22262117 -63433637 - L1ME4a LINE L1 -135 5986 5706 7256 54 0 7 chr15 22262288 22263351 -63432403 + L1PA6 LINE L1 5093 6149 -5 2302 149 65 173 chr15 22263960 22264098 -63431656 + LTR8A LTR ERV1 1 152 -575 1901 160 3 14 chr15 22264098 22264411 -63431343 - AluJo SINE Alu 0 312 1 2302 149 65 173 chr15 22264411 22265078 -63430676 + LTR8A LTR ERV1 152 719 -8 2126 140 0 0 chr15 22265551 22265844 -63429910 - AluSx SINE Alu -19 293 1 557 273 99 65 chr15 22265891 22266415 -63429339 - MER34 LTR ERV1 0 542 1 186 100 0 60 chr15 22266613 22266663 -63429091 + (TA)n Simple_repeat Simple_repeat 1 47 0 207 114 0 0 chr15 22266663 22266698 -63429056 + (TC)n Simple_repeat Simple_repeat 1 35 0 235 148 37 19 chr15 22266707 22266761 -63428993 + (TA)n Simple_repeat Simple_repeat 2 56 0 4507 186 18 42 chr15 22266935 22267650 -63428104 + L1MB5 LINE L1 4343 5073 -1101 2130 117 3 26 chr15 22267650 22267958 -63427796 + AluSq SINE Alu 1 301 -12 4507 186 18 42 chr15 22267958 22268436 -63427318 + L1MB5 LINE L1 5073 5561 -613 207 0 0 0 chr15 22268436 22268459 -63427295 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4507 186 18 42 chr15 22268459 22269103 -63426651 + L1MB5 LINE L1 5561 6134 -40 1732 178 25 0 chr15 22269103 22269389 -63426365 + AluJb SINE Alu 1 293 -19 4507 186 18 42 chr15 22269389 22269430 -63426324 + L1MB5 LINE L1 6134 6174 0 271 318 176 0 chr15 22270315 22270485 -63425269 + MIR SINE MIR 15 214 -48 1683 162 10 30 chr15 22270584 22270887 -63424867 + AluJo SINE Alu 1 297 -15 1069 153 6 0 chr15 22270887 22271044 -63424710 + AluJb SINE Alu 134 291 -21 183 42 0 0 chr15 22271044 22271068 -63424686 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 503 218 28 63 chr15 22271259 22271401 -63424353 - MIR SINE MIR -79 183 47 845 212 24 14 chr15 22271408 22271620 -63424134 - THE1A LTR MaLR -1 354 141 1010 179 0 0 chr15 22271789 22271990 -63423764 + AluSp SINE Alu 141 313 0 2566 73 0 3 chr15 22272204 22272534 -63423220 + MER41A LTR ERV1 1 329 -225 995 115 0 7 chr15 22272535 22272674 -63423080 + AluSq/x SINE Alu 2 139 -173 226 188 0 0 chr15 22272676 22272724 -63423030 + Alu SINE Alu 253 300 0 * 1855 79 4 0 chr15 22272719 22272959 -63422795 + MER41A LTR ERV1 314 554 0 364 324 29 22 chr15 22273374 22273513 -63422241 + MIR SINE MIR 1 140 -122 317 111 0 0 chr15 22273516 22273561 -63422193 + MER4D LTR ERV1 782 826 -77 974 252 4 46 chr15 22273591 22273853 -63421901 - MIR SINE MIR 0 262 12 211 316 13 0 chr15 22273851 22273927 -63421827 + MIR SINE MIR 156 232 -30 * 2139 112 3 25 chr15 22273966 22274141 -63421613 - AluSx SINE Alu -5 307 141 2253 116 0 0 chr15 22274141 22274442 -63421312 - AluSg SINE Alu -9 301 1 2139 112 3 25 chr15 22274442 22274580 -63421174 - AluSx SINE Alu -171 141 1 796 103 7 97 chr15 22274789 22274934 -63420820 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 22275277 22275802 -63419952 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 22276508 22276799 -63418955 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 22277050 22277186 -63418568 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 22277186 22277515 -63418239 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 22277515 22277685 -63418069 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 22277776 22278085 -63417669 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 22278108 22278217 -63417537 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 22278230 22278356 -63417398 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 22278408 22278936 -63416818 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 22278939 22279095 -63416659 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 22279109 22279161 -63416593 + GA-rich Low_complexity Low_complexity 3 57 0 377 179 35 41 chr15 22279338 22279483 -63416271 + GA-rich Low_complexity Low_complexity 2 145 0 365 192 13 26 chr15 22279483 22279513 -63416241 + Tigger1 DNA MER2_type 521 550 -1868 2072 97 12 68 chr15 22279513 22279834 -63415920 - AluSx SINE Alu -8 304 2 365 192 13 26 chr15 22279834 22279881 -63415873 + Tigger1 DNA MER2_type 550 597 -1821 356 127 0 20 chr15 22279959 22280031 -63415723 + AluJo SINE Alu 82 136 -166 2823 118 29 0 chr15 22280048 22280465 -63415289 + Tigger1 DNA MER2_type 799 1227 -1191 2198 118 3 6 chr15 22280466 22280780 -63414974 + AluSp SINE Alu 1 313 0 4893 102 35 19 chr15 22280780 22281497 -63414257 + Tigger1 DNA MER2_type 1471 2202 -216 2344 81 3 0 chr15 22281497 22281792 -63413962 - AluSp SINE Alu -17 296 1 4893 102 35 19 chr15 22281792 22281818 -63413936 + Tigger1 DNA MER2_type 2202 2226 -192 677 179 8 0 chr15 22281818 22281941 -63413813 - FRAM SINE Alu -7 169 46 907 134 123 6 chr15 22281988 22282159 -63413595 + Tigger1 DNA MER2_type 2228 2418 0 27 0 0 0 chr15 22282635 22282662 -63413092 + GC_rich Low_complexity Low_complexity 1 27 0 285 333 7 28 chr15 22283953 22284094 -63411660 - MIR3 SINE MIR -6 202 65 408 291 194 47 chr15 22284523 22284655 -63411099 + L2 LINE L2 2825 2936 -377 386 209 102 94 chr15 22284655 22284909 -63410845 + MER112 DNA MER1_type 1 256 0 408 291 194 47 chr15 22284909 22284986 -63410768 + L2 LINE L2 2936 3000 -313 2307 79 0 30 chr15 22284986 22285332 -63410422 + AluSx SINE Alu 1 312 0 408 291 194 47 chr15 22285332 22285544 -63410210 + L2 LINE L2 3000 3309 -4 1746 119 19 8 chr15 22286073 22286334 -63409420 + AluSx SINE Alu 48 311 -1 1320 103 210 60 chr15 22286379 22286631 -63409123 + AluSx SINE Alu 1 290 -12 1551 177 34 10 chr15 22286717 22287011 -63408743 + AluJb SINE Alu 1 301 -11 501 272 130 67 chr15 22287117 22287597 -63408157 - L2 LINE L2 -24 3289 2757 2500 74 0 0 chr15 22287597 22287908 -63407846 - AluY SINE Alu 0 311 1 501 272 130 67 chr15 22287908 22288002 -63407752 - L2 LINE L2 -556 2757 2670 1101 168 9 35 chr15 22288003 22288235 -63407519 + AluSp SINE Alu 69 294 -19 27 0 0 0 chr15 22288436 22288463 -63407291 + AT_rich Low_complexity Low_complexity 1 27 0 441 205 107 144 chr15 22288903 22288981 -63406773 + HAL1 LINE L1 967 1046 -1461 1658 169 0 53 chr15 22288981 22289301 -63406453 + AluJb SINE Alu 5 307 -5 441 205 107 144 chr15 22289301 22289354 -63406400 + HAL1 LINE L1 1046 1099 -1408 2279 78 3 0 chr15 22289354 22289669 -63406085 - AluY SINE Alu 0 316 1 441 205 107 144 chr15 22289669 22289714 -63406040 + HAL1 LINE L1 1099 1144 -1363 774 158 0 43 chr15 22289714 22289853 -63405901 + AluJo/FLAM SINE Alu 1 133 -169 1551 189 7 30 chr15 22289855 22290151 -63405603 + AluJo SINE Alu 1 289 -23 441 205 107 144 chr15 22290151 22290227 -63405527 + HAL1 LINE L1 1145 1222 -1285 2477 92 0 0 chr15 22290227 22290531 -63405223 + AluSx SINE Alu 1 304 -8 441 205 107 144 chr15 22290531 22290662 -63405092 + HAL1 LINE L1 1222 1338 -1169 2252 92 6 54 chr15 22290662 22290978 -63404776 - AluSp SINE Alu -12 301 1 441 205 107 144 chr15 22290978 22291065 -63404689 + HAL1 LINE L1 1338 1427 -1080 1760 239 59 32 chr15 22291074 22291568 -63404186 - L1M4 LINE L1 -6035 507 1 1259 163 0 48 chr15 22291613 22291840 -63403914 + AluJo SINE Alu 87 302 -10 989 96 0 0 chr15 22291899 22292024 -63403730 - AluSq/x SINE Alu -187 125 1 741 230 0 30 chr15 22292027 22292192 -63403562 - FRAM SINE Alu -3 163 4 670 133 19 0 chr15 22292199 22292304 -63403450 - MER3 DNA MER1_type -97 112 6 915 189 0 63 chr15 22292622 22292812 -63402942 + MER5A DNA MER1_type 1 178 -11 1978 151 3 7 chr15 22293259 22293564 -63402190 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 22293919 22293941 -63401813 + GC_rich Low_complexity Low_complexity 1 22 0 2023 89 0 0 chr15 22294407 22294655 -63401099 + AluSx SINE Alu 56 303 -9 391 119 0 0 chr15 22295866 22295925 -63399829 - Alu SINE Alu -1 301 243 393 191 0 0 chr15 22295964 22296032 -63399722 - AluS SINE Alu -2 298 231 283 131 25 5 chr15 22296032 22296073 -63399681 - AluS SINE Alu -29 271 247 1580 168 3 49 chr15 22296073 22296359 -63399395 - AluJb SINE Alu -39 273 1 283 131 25 5 chr15 22296359 22296377 -63399377 - AluS SINE Alu -53 247 231 2227 108 3 16 chr15 22296582 22296889 -63398865 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr15 22296976 22297004 -63398750 + AT_rich Low_complexity Low_complexity 1 28 0 440 197 26 26 chr15 22298031 22298148 -63397606 + FLAM_C SINE Alu 11 127 -16 235 307 0 18 chr15 22298221 22298335 -63397419 + HAL1 LINE L1 823 934 -1573 2093 135 26 0 chr15 22298355 22298658 -63397096 + AluSx SINE Alu 1 311 -1 2093 110 0 0 chr15 22298778 22299103 -63396651 - AluSg SINE Alu 0 325 1 830 171 19 6 chr15 22299152 22299310 -63396444 + L1MB7 LINE L1 6006 6165 -19 443 238 137 98 chr15 22299866 22299910 -63395844 - L1MC4a LINE L1 -1635 6173 6132 1665 139 0 118 chr15 22299910 22300256 -63395498 - AluJb SINE Alu -7 305 1 443 238 137 98 chr15 22300256 22300547 -63395207 - L1MC4a LINE L1 -1676 6132 5825 2300 115 0 6 chr15 22300890 22301203 -63394551 - AluSq SINE Alu 0 313 3 910 263 14 14 chr15 22301259 22301476 -63394278 + MIR SINE MIR 13 229 -33 2141 106 3 32 chr15 22302172 22302510 -63393244 - AluSp SINE Alu 0 313 1 2219 95 3 35 chr15 22302512 22302829 -63392925 - AluSg SINE Alu -1 309 3 1547 211 3 0 chr15 22303161 22303455 -63392299 - AluJo SINE Alu -17 295 1 1876 158 14 0 chr15 22303488 22303779 -63391975 + AluJo SINE Alu 3 297 -15 2176 93 58 0 chr15 22303783 22304074 -63391680 + AluSp SINE Alu 1 308 -5 1748 166 0 14 chr15 22304368 22304663 -63391091 + AluJo SINE Alu 6 296 -16 2511 48 0 3 chr15 22304849 22305142 -63390612 - AluY SINE Alu -19 292 1 273 258 0 34 chr15 22305146 22305235 -63390519 - L1MC5 LINE L1 -179 7782 7697 314 128 0 0 chr15 22305250 22305297 -63390457 + Alu SINE Alu 1 47 -253 1353 181 11 11 chr15 22305622 22305903 -63389851 - AluY SINE Alu -20 291 11 2248 98 0 3 chr15 22305968 22306264 -63389490 + AluSq SINE Alu 16 310 -3 435 38 0 0 chr15 22306273 22306326 -63389428 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 335 271 88 53 chr15 22306525 22306695 -63389059 + MIR SINE MIR 81 256 -6 2109 107 38 3 chr15 22307565 22307855 -63387899 + AluY SINE Alu 1 300 -11 724 144 168 0 chr15 22308484 22308609 -63387145 - MER46A DNA MER2_type -90 146 1 21 36 0 0 chr15 22309086 22309114 -63386640 + AT_rich Low_complexity Low_complexity 1 28 0 2062 104 0 7 chr15 22309567 22309837 -63385917 + AluSx SINE Alu 1 268 -44 195 42 0 0 chr15 22309839 22309863 -63385891 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1655 173 58 0 chr15 22309898 22310052 -63385702 - AluJb SINE Alu -18 294 150 347 0 0 23 chr15 22310052 22310096 -63385658 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1655 173 58 0 chr15 22310096 22310219 -63385535 - AluJb SINE Alu -162 150 1 514 191 0 32 chr15 22310279 22310373 -63385381 + FLAM_C SINE Alu 35 125 -18 546 155 41 0 chr15 22311410 22311507 -63384247 + MER53 DNA DNA 85 185 -4 751 197 15 0 chr15 22311514 22311646 -63384108 + MER94 DNA DNA 1 134 0 21 36 0 0 chr15 22311667 22311695 -63384059 + AT_rich Low_complexity Low_complexity 1 28 0 1459 173 58 7 chr15 22311772 22312049 -63383705 - AluJo SINE Alu -14 298 8 25 0 0 0 chr15 22312052 22312077 -63383677 + AT_rich Low_complexity Low_complexity 1 25 0 2114 109 0 11 chr15 22312220 22312530 -63383224 - AluSx SINE Alu 0 307 1 2252 103 0 3 chr15 22313086 22313386 -63382368 - AluSg SINE Alu -10 300 2 2044 104 0 0 chr15 22313683 22313943 -63381811 - AluSq SINE Alu -53 260 1 584 238 216 14 chr15 22314028 22314398 -63381356 - L1MC4a LINE L1 -1675 6133 5689 630 280 102 88 chr15 22314590 22315022 -63380732 - L1MC4a LINE L1 -1979 5829 5392 1529 127 33 123 chr15 22315050 22315245 -63380509 - AluJb SINE Alu -5 307 153 754 125 0 0 chr15 22315245 22315349 -63380405 + U13 snRNA snRNA 1 104 0 1529 127 33 123 chr15 22315349 22315485 -63380269 - AluJb SINE Alu -159 153 6 1080 150 6 23 chr15 22315743 22315916 -63379838 + AluJb SINE Alu 133 302 -10 1674 189 10 0 chr15 22316553 22316850 -63378904 + AluJo SINE Alu 10 309 -3 983 257 9 14 chr15 22316882 22317104 -63378650 - MER58A DNA MER1_type -3 221 1 1570 44 6 0 chr15 22317153 22317334 -63378420 - L1PA4 LINE L1 -3 6152 5971 1202 267 139 9 chr15 22317364 22317802 -63377952 + L2 LINE L2 2819 3313 0 2014 131 0 0 chr15 22318332 22318632 -63377122 - AluSx SINE Alu 0 310 11 462 267 67 61 chr15 22318682 22318847 -63376907 + MIR3 SINE MIR 16 181 -27 473 163 151 0 chr15 22318847 22318933 -63376821 + AluJ/FLAM SINE Alu 1 99 -213 449 114 0 11 chr15 22318933 22319021 -63376733 + (CA)n Simple_repeat Simple_repeat 1 87 0 333 261 17 34 chr15 22319638 22319744 -63376010 - MIR SINE MIR -62 146 45 182 118 29 0 chr15 22319876 22319910 -63375844 + T-rich Low_complexity Low_complexity 4 38 0 2288 107 0 0 chr15 22320615 22320906 -63374848 + AluSx SINE Alu 6 296 -16 2259 114 0 3 chr15 22320914 22321221 -63374533 + AluSq SINE Alu 1 306 -7 1944 128 27 7 chr15 22323044 22323342 -63372412 - AluSx SINE Alu -8 304 1 1483 203 30 3 chr15 22323849 22324145 -63371609 + AluJb SINE Alu 1 304 -8 1881 152 10 3 chr15 22324501 22324797 -63370957 - AluJb SINE Alu -14 298 1 984 103 0 22 chr15 22324857 22324993 -63370761 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr15 22327069 22327090 -63368664 + (TA)n Simple_repeat Simple_repeat 1 21 0 1147 174 181 18 chr15 22327510 22327595 -63368159 + MER58B DNA MER1_type 14 84 -2336 1828 153 7 33 chr15 22327595 22327895 -63367859 + AluJb SINE Alu 3 294 -18 1147 174 181 18 chr15 22327895 22328091 -63367663 + MER58B DNA MER1_type 84 341 0 2160 108 17 17 chr15 22328117 22328414 -63367340 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr15 22328850 22328880 -63366874 + AT_rich Low_complexity Low_complexity 1 30 0 1521 151 19 22 chr15 22328906 22329177 -63366577 + AluJb SINE Alu 21 290 -22 787 44 83 0 chr15 22329192 22329422 -63366332 + (TA)n Simple_repeat Simple_repeat 1 249 0 1689 158 81 0 chr15 22330611 22330883 -63364871 + AluJb SINE Alu 6 299 -13 2145 93 0 45 chr15 22330943 22331254 -63364500 + AluSx SINE Alu 1 297 -15 331 179 30 0 chr15 22331843 22331910 -63363844 + MIR SINE MIR 161 229 -33 718 76 0 0 chr15 22332044 22332136 -63363618 - MER46A DNA MER2_type 0 236 145 1130 182 0 11 chr15 22332149 22332330 -63363424 - AluSx SINE Alu -131 181 3 2480 46 0 10 chr15 22332817 22333119 -63362635 - AluY SINE Alu -12 299 1 1799 134 7 50 chr15 22333395 22333693 -63362061 - AluJb SINE Alu -15 297 13 880 168 0 0 chr15 22333809 22333940 -63361814 + FLAM_C SINE Alu 2 132 -1 351 273 81 0 chr15 22333949 22334048 -63361706 + MIR SINE MIR 38 144 -64 * 810 241 79 29 chr15 22334043 22334284 -63361470 - MIR SINE MIR 0 262 10 328 266 49 42 chr15 22334621 22334764 -63360990 + MIR SINE MIR 8 151 -111 2314 186 29 77 chr15 22334769 22335416 -63360338 - LTR6A LTR ERV1 0 564 1 2237 113 3 3 chr15 22335483 22335794 -63359960 + AluSq SINE Alu 1 311 -2 2552 134 23 59 chr15 22335950 22335991 -63359763 + MER4E LTR ERV1 1 42 -737 2043 146 23 23 chr15 22335991 22336334 -63359420 - MER61A LTR ERV1 0 343 1 2552 134 23 59 chr15 22336334 22336367 -63359387 + MER4E LTR ERV1 42 75 -704 2068 137 14 0 chr15 22336367 22336660 -63359094 - AluSx SINE Alu -15 297 1 2552 134 23 59 chr15 22336660 22337011 -63358743 + MER4E LTR ERV1 75 577 -202 2455 86 0 13 chr15 22337011 22337324 -63358430 - AluSx SINE Alu -3 309 1 2552 134 23 59 chr15 22337324 22337520 -63358234 + MER4E LTR ERV1 577 779 0 295 280 118 21 chr15 22337594 22337687 -63358067 + MIR SINE MIR 43 144 -118 413 196 76 0 chr15 22337687 22337779 -63357975 - LTR36 LTR ERV1 0 611 513 1729 152 12 28 chr15 22337779 22338121 -63357633 - MER4A LTR ERV1 0 664 270 466 120 13 13 chr15 22338123 22338198 -63357556 - MER4A LTR ERV1 -589 75 1 * 907 188 135 103 chr15 22338198 22338643 -63357111 - LTR36 LTR ERV1 -94 517 58 444 190 112 17 chr15 22338658 22338774 -63356980 + MIR SINE MIR 132 258 -4 389 322 25 0 chr15 22339602 22339723 -63356031 + L2 LINE L2 3147 3270 -2 412 108 0 68 chr15 22339807 22339881 -63355873 - MER3 DNA MER1_type 0 209 141 1802 221 15 102 chr15 22339882 22340469 -63355285 + L1ME2 LINE L1 5611 6146 -18 839 194 6 34 chr15 22340469 22340644 -63355110 - MER3 DNA MER1_type -86 123 1 1273 119 36 55 chr15 22340990 22341056 -63354698 - MSTA LTR MaLR -2 426 360 2135 115 13 0 chr15 22341056 22341233 -63354521 - AluSq SINE Alu -5 308 124 192 40 0 0 chr15 22341233 22341258 -63354496 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2135 115 13 0 chr15 22341258 22341384 -63354370 - AluSq SINE Alu -189 124 1 1273 119 36 55 chr15 22341384 22341536 -63354218 - MSTA LTR MaLR -68 360 212 * 1712 214 29 47 chr15 22341519 22341963 -63353791 - MLT2B3 LTR ERVL -118 436 1 2352 99 3 0 chr15 22341975 22342278 -63353476 - AluSp SINE Alu -9 304 1 230 315 19 19 chr15 22342296 22342404 -63353350 + L2 LINE L2 1851 1958 -1356 230 98 49 0 chr15 22342407 22342448 -63353306 + T-rich Low_complexity Low_complexity 3 45 0 2500 89 0 0 chr15 22342451 22342764 -63352990 - AluSp SINE Alu 0 313 1 196 269 176 0 chr15 22343135 22343254 -63352500 + L2 LINE L2 2017 2156 -1158 583 146 0 0 chr15 22343585 22343667 -63352087 + AluS SINE Alu 2 83 -230 1011 114 17 0 chr15 22343696 22343871 -63351883 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 186 43 0 0 chr15 22343875 22343898 -63351856 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2175 208 107 51 chr15 22344516 22345227 -63350527 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22345352 22345380 -63350374 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2248 116 7 0 chr15 22345684 22345987 -63349767 - AluSq SINE Alu -8 305 1 2312 82 3 3 chr15 22347515 22347809 -63347945 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 22348316 22348342 -63347412 + AT_rich Low_complexity Low_complexity 1 26 0 2242 99 0 3 chr15 22348524 22348818 -63346936 - AluSq SINE Alu -13 300 8 1037 99 19 8 chr15 22349302 22349565 -63346189 + (TGG)n Simple_repeat Simple_repeat 1 266 0 1510 185 33 23 chr15 22350244 22350547 -63345207 + AluJo SINE Alu 1 306 -6 296 121 182 0 chr15 22350615 22350681 -63345073 + L2 LINE L2 3221 3298 -15 270 257 50 20 chr15 22350685 22350786 -63344968 - MER103 DNA DNA -62 104 1 22 35 0 0 chr15 22350971 22351000 -63344754 + AT_rich Low_complexity Low_complexity 1 29 0 2097 144 0 10 chr15 22351000 22351313 -63344441 + AluSx SINE Alu 1 310 -2 394 112 0 184 chr15 22351408 22351506 -63344248 - MADE1 DNA Mariner 0 80 1 312 306 63 89 chr15 22351513 22351863 -63343891 + L1ME LINE L1 5321 5661 -460 265 89 22 0 chr15 22351867 22351912 -63343842 - MADE1 DNA Mariner -34 46 1 28 0 0 0 chr15 22352198 22352226 -63343528 + AT_rich Low_complexity Low_complexity 1 28 0 1502 222 99 41 chr15 22352261 22352798 -63342956 - L1ME3A LINE L1 -190 5980 5413 304 171 39 77 chr15 22352942 22353117 -63342637 - L1ME3A LINE L1 -779 5399 5236 1390 241 64 29 chr15 22354806 22354935 -63340819 - MER63B DNA MER1_type -627 435 312 2149 116 10 0 chr15 22354935 22355236 -63340518 - AluSx SINE Alu -8 304 1 1390 241 64 29 chr15 22355236 22355526 -63340228 - MER63B DNA MER1_type -750 312 1 831 173 8 0 chr15 22356480 22356613 -63339141 - AluJo SINE Alu -178 134 1 919 141 0 0 chr15 22357199 22357334 -63338420 + FLAM_C SINE Alu 1 135 -8 828 144 0 0 chr15 22357337 22357462 -63338292 - AluSg/x SINE Alu -6 304 180 8825 50 6 15 chr15 22357462 22358533 -63337221 + MER11C LTR ERVK 1 1061 -10 1469 114 45 0 chr15 22358533 22358735 -63337019 - AluSq SINE Alu -102 211 1 28 0 0 0 chr15 22358742 22358770 -63336984 + AT_rich Low_complexity Low_complexity 1 28 0 295 289 91 25 chr15 22358892 22358922 -63336832 - L2 LINE L2 -8 3264 3237 2207 123 18 6 chr15 22358922 22359255 -63336499 - MER1B DNA MER1_type 0 337 1 295 289 91 25 chr15 22359255 22359345 -63336409 - L2 LINE L2 -35 3237 3136 285 249 33 58 chr15 22359476 22359662 -63336092 + L2 LINE L2 2971 3269 -3 23 33 0 0 chr15 22359699 22359729 -63336025 + AT_rich Low_complexity Low_complexity 1 30 0 296 280 20 0 chr15 22360412 22360512 -63335242 - MIR3 SINE MIR -41 167 66 213 259 35 0 chr15 22361447 22361505 -63334249 - L2 LINE L2 0 3272 3213 494 254 86 30 chr15 22361612 22361809 -63333945 - MIR SINE MIR -21 241 34 274 200 14 14 chr15 22361855 22361925 -63333829 - L2 LINE L2 -211 3061 2992 409 226 9 28 chr15 22361994 22362100 -63333654 - MER5B DNA MER1_type -1 177 74 21 57 0 0 chr15 22362977 22363012 -63332742 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 22363040 22363069 -63332685 + AT_rich Low_complexity Low_complexity 1 29 0 2347 115 0 0 chr15 22363103 22363440 -63332314 + AluSx SINE Alu 1 337 0 284 343 28 17 chr15 22363491 22363669 -63332085 - L1MC/D LINE L1 -2223 5585 5406 1827 157 0 14 chr15 22363720 22364014 -63331740 + AluJo SINE Alu 1 290 -22 319 62 0 97 chr15 22364015 22364128 -63331626 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 332 250 81 16 chr15 22364311 22364435 -63331319 + L2 LINE L2 3171 3302 -11 470 66 16 0 chr15 22364435 22364496 -63331258 + U7 snRNA snRNA 1 62 -1 189 74 0 0 chr15 22364528 22364555 -63331199 + (CATA)n Simple_repeat Simple_repeat 2 28 0 421 216 55 106 chr15 22366323 22366390 -63329364 - MER5A DNA MER1_type 0 189 120 2478 85 0 0 chr15 22366390 22366695 -63329059 + AluY SINE Alu 1 305 -6 421 216 55 106 chr15 22366695 22366826 -63328928 - MER5A DNA MER1_type -69 120 1 229 299 11 11 chr15 22366995 22367082 -63328672 - MIR SINE MIR -136 126 40 2139 111 0 13 chr15 22367501 22367799 -63327955 + AluJo SINE Alu 4 297 -15 22 0 0 0 chr15 22367805 22367827 -63327927 + AT_rich Low_complexity Low_complexity 1 22 0 743 227 17 6 chr15 22367827 22368003 -63327751 + MER5A DNA MER1_type 12 189 0 2250 104 23 3 chr15 22368403 22368710 -63327044 - AluSq SINE Alu 0 313 1 4195 65 69 24 chr15 22368791 22369373 -63326381 + LTR66 LTR ERVL 1 608 -2 317 304 96 0 chr15 22369522 22369657 -63326097 + L1ME2 LINE L1 6014 6161 -3 57 66 0 0 chr15 22369660 22369766 -63325988 + AT_rich Low_complexity Low_complexity 1 106 0 2316 109 0 0 chr15 22370080 22370382 -63325372 - AluSx SINE Alu -10 302 1 2235 106 0 16 chr15 22370385 22370688 -63325066 - AluSq SINE Alu -15 298 1 1236 197 119 64 chr15 22371046 22371467 -63324287 + LTR56 LTR ERV1 2 445 0 1856 138 24 10 chr15 22371595 22371891 -63323863 - AluSx SINE Alu -12 300 1 1660 155 19 4 chr15 22372218 22372482 -63323272 - AluJb SINE Alu -23 289 22 2204 129 10 0 chr15 22372621 22372924 -63322830 - AluSx SINE Alu -6 306 1 1351 97 27 0 chr15 22372935 22373121 -63322633 - AluSc SINE Alu -5 304 114 811 82 231 0 chr15 22373138 22373285 -63322469 - MER30 DNA MER1_type -49 181 1 1433 162 143 4 chr15 22373429 22373694 -63322060 + AluJb SINE Alu 1 302 0 203 265 20 0 chr15 22373979 22374028 -63321726 + L2 LINE L2 3206 3255 -17 462 201 138 135 chr15 22374206 22374485 -63321269 + L1MC4 LINE L1 7634 7916 -126 1941 138 10 10 chr15 22374485 22374783 -63320971 - AluJb SINE Alu -14 298 1 462 201 138 135 chr15 22374783 22374910 -63320844 + L1MC4 LINE L1 7916 8041 -1 1456 156 136 66 chr15 22375367 22375937 -63319817 + MER39 LTR ERV1 2 697 -10 1572 123 31 50 chr15 22375948 22376209 -63319545 + AluSx SINE Alu 50 305 -7 2731 149 47 24 chr15 22376218 22376754 -63319000 + L1MB7 LINE L1 5637 6184 0 2564 57 3 0 chr15 22376959 22377255 -63318499 - AluY SINE Alu -14 297 1 2021 142 7 0 chr15 22378274 22378563 -63317191 - AluSx SINE Alu -21 291 1 25 0 0 0 chr15 22379450 22379475 -63316279 + AT_rich Low_complexity Low_complexity 1 25 0 1512 157 77 0 chr15 22380710 22380997 -63314757 + AluJo SINE Alu 1 307 0 211 204 0 0 chr15 22381214 22381268 -63314486 + A-rich Low_complexity Low_complexity 1 54 0 419 294 119 46 chr15 22381767 22381985 -63313769 + MIR SINE MIR 28 261 -1 1997 148 3 0 chr15 22381999 22382302 -63313452 - AluSx SINE Alu -8 304 1 219 250 19 0 chr15 22382586 22382638 -63313116 + GA-rich Low_complexity Low_complexity 2 54 0 334 236 29 50 chr15 22382968 22383108 -63312646 + L1MC5 LINE L1 7552 7688 -273 1875 85 0 4 chr15 22383164 22383399 -63312355 - AluSc SINE Alu -75 234 1 1075 159 0 6 chr15 22383399 22383562 -63312192 + AluJo SINE Alu 117 278 -34 2132 104 0 17 chr15 22383562 22383875 -63311879 - AluSx SINE Alu 0 308 1 1202 157 57 40 chr15 22383929 22384177 -63311577 - Tigger2a DNA MER2_type 0 444 193 1163 127 0 0 chr15 22384180 22384338 -63311416 - AluSg/x SINE Alu -19 291 134 924 110 41 164 chr15 22384338 22384499 -63311255 - Tigger2a DNA MER2_type -2516 192 63 2091 81 8 0 chr15 22384499 22384758 -63310996 + AluSx SINE Alu 27 287 -25 924 110 41 164 chr15 22384758 22384815 -63310939 - Tigger2a DNA MER2_type -2645 63 1 2221 92 3 41 chr15 22385308 22385625 -63310129 - AluSx SINE Alu -7 305 1 1265 224 32 35 chr15 22386127 22386365 -63309389 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 22386365 22386661 -63309093 - AluSx SINE Alu -19 293 1 1265 224 32 35 chr15 22386661 22386766 -63308988 + MER2 DNA MER2_type 239 343 -1 2124 208 107 51 chr15 22387522 22388233 -63307521 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22388358 22388386 -63307368 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 22388690 22388993 -63306761 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 22389317 22389678 -63306076 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 22389678 22389969 -63305785 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 22389969 22390158 -63305596 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 22390225 22390537 -63305217 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 22390579 22390786 -63304968 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 22390861 22390963 -63304791 + L2 LINE L2 3144 3271 -1 2502 83 0 0 chr15 22391339 22391641 -63304113 - AluSx SINE Alu -10 302 1 451 277 66 18 chr15 22392988 22393154 -63302600 + L3 LINE CR1 1385 1558 -19 216 0 0 0 chr15 22393419 22393443 -63302311 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 763 156 0 0 chr15 22393443 22393557 -63302197 - FLAM_C SINE Alu -193 119 3 21 36 0 0 chr15 22393687 22393715 -63302039 + AT_rich Low_complexity Low_complexity 1 28 0 1958 148 10 7 chr15 22394190 22394487 -63301267 - AluSx SINE Alu -14 298 1 431 214 214 26 chr15 22394487 22394833 -63300921 + L1ME4a LINE L1 5709 6119 -2 500 283 133 39 chr15 22395245 22395745 -63300009 + L2 LINE L2 2664 3292 -21 363 269 17 34 chr15 22395808 22395927 -63299827 - MIR SINE MIR -115 147 31 311 324 161 25 chr15 22396010 22396415 -63299339 - L2 LINE L2 -631 2683 2224 1253 185 119 11 chr15 22396990 22397276 -63298478 + MER58B DNA MER1_type 25 341 0 2306 89 7 0 chr15 22397289 22397581 -63298173 - AluSg SINE Alu -16 294 1 2229 121 0 3 chr15 22397590 22397887 -63297867 - AluSp SINE Alu -17 296 1 1329 122 43 135 chr15 22397894 22398085 -63297669 - AluJo SINE Alu -15 297 143 1603 189 11 11 chr15 22398085 22398371 -63297383 + AluJo SINE Alu 1 286 -26 1329 122 43 135 chr15 22398371 22398483 -63297271 - AluJo SINE Alu -169 143 22 2095 106 0 0 chr15 22398517 22398782 -63296972 - AluSq SINE Alu -48 265 1 827 154 0 23 chr15 22398798 22398928 -63296826 - FLAM_C SINE Alu -6 127 1 265 297 22 22 chr15 22399008 22399099 -63296655 - L2 LINE L2 -1357 1957 1867 781 271 101 72 chr15 22399526 22399823 -63295931 - L1MC4a LINE L1 -119 6002 5715 1720 134 24 45 chr15 22399823 22400113 -63295641 - AluJo SINE Alu -18 294 11 781 271 101 72 chr15 22400113 22400310 -63295444 - L1MC4a LINE L1 -406 5715 5486 2083 128 7 3 chr15 22400310 22400607 -63295147 - AluSx SINE Alu -14 298 1 781 271 101 72 chr15 22400607 22400705 -63295049 - L1MC4a LINE L1 -635 5486 5392 293 240 58 19 chr15 22400700 22400804 -63294950 + L1MC4 LINE L1 7139 7246 -796 * 871 170 7 20 chr15 22400809 22400962 -63294792 - FRAM SINE Alu -25 151 1 758 228 88 0 chr15 22400963 22401156 -63294598 + L1MC4 LINE L1 7238 7447 -595 455 263 8 23 chr15 22401169 22401302 -63294452 + L1MC4 LINE L1 7790 7920 -122 202 200 0 25 chr15 22401322 22401362 -63294392 + GA-rich Low_complexity Low_complexity 4 42 0 577 154 23 15 chr15 22401362 22401492 -63294262 + L1MC4 LINE L1 7912 8042 0 328 200 93 57 chr15 22401513 22401653 -63294101 - L1MC4a LINE L1 -2410 5398 5254 2183 188 194 24 chr15 22403243 22403898 -63291856 + L1MC4 LINE L1 7276 7995 0 2201 117 20 25 chr15 22404443 22404801 -63290953 + L1MA4 LINE L1 5939 6294 -6 2184 113 3 7 chr15 22404866 22405176 -63290578 - AluSx SINE Alu -3 309 1 286 298 133 0 chr15 22408831 22408982 -63286772 + L3 LINE CR1 1180 1350 -227 2027 141 6 13 chr15 22409448 22409760 -63285994 - AluSx SINE Alu -2 310 1 2052 171 34 8 chr15 22410024 22410380 -63285374 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr15 22410799 22410827 -63284927 + AT_rich Low_complexity Low_complexity 1 28 0 483 257 14 75 chr15 22411442 22411656 -63284098 - L2 LINE L2 -4 3309 3109 3439 197 70 33 chr15 22411688 22412502 -63283252 - MER21B LTR ERV1 -1 862 19 376 266 0 0 chr15 22412524 22412603 -63283151 - MER21B LTR ERV1 -773 90 12 450 301 68 6 chr15 22412623 22412786 -63282968 - L2 LINE L2 -261 3052 2880 2348 99 0 3 chr15 22412807 22413111 -63282643 - AluSg SINE Alu -7 303 1 198 391 87 32 chr15 22413526 22413779 -63281975 + L2 LINE L2 3006 3272 0 2138 138 17 46 chr15 22415287 22415634 -63280120 - MER1B DNA MER1_type 0 337 1 300 309 0 0 chr15 22415715 22415796 -63279958 + MIR SINE MIR 62 142 -66 1550 149 8 4 chr15 22415825 22416060 -63279694 + MER46A DNA MER2_type 1 236 0 1013 223 13 22 chr15 22416194 22416423 -63279331 - MIR SINE MIR -33 229 3 381 317 35 0 chr15 22416423 22416565 -63279189 + MIR SINE MIR 30 176 -86 255 203 188 0 chr15 22416559 22416623 -63279131 - L2 LINE L2 -1 3312 3237 * 232 243 71 0 chr15 22416629 22416699 -63279055 + MIR SINE MIR 188 262 0 217 244 0 0 chr15 22417305 22417346 -63278408 + (CA)n Simple_repeat Simple_repeat 2 42 0 978 236 48 0 chr15 22417554 22417762 -63277992 - MIR SINE MIR -44 218 1 2144 123 0 19 chr15 22418267 22418577 -63277177 - AluSx SINE Alu -8 304 1 319 309 41 31 chr15 22418683 22418780 -63276974 - MIR SINE MIR -87 121 24 393 315 103 7 chr15 22419479 22419547 -63276207 + MER5A DNA MER1_type 9 69 -120 1978 148 26 0 chr15 22419547 22419850 -63275904 + AluSx SINE Alu 1 311 -1 393 315 103 7 chr15 22419850 22419927 -63275827 + MER5A DNA MER1_type 69 168 -21 1291 183 0 0 chr15 22420040 22420259 -63275495 + AluJb SINE Alu 86 304 -8 272 192 19 0 chr15 22420327 22420379 -63275375 - L3b LINE CR1 -4 1579 1527 308 208 0 0 chr15 22420741 22420794 -63274960 + L1MD3 LINE L1 7064 7116 -879 2771 216 29 21 chr15 22420798 22421438 -63274316 + L1MD3 LINE L1 6136 6328 -16 766 172 0 33 chr15 22421548 22421670 -63274084 + FLAM_C SINE Alu 2 119 -14 21 0 0 0 chr15 22421670 22421691 -63274063 + AT_rich Low_complexity Low_complexity 1 21 0 184 322 348 0 chr15 22422025 22422140 -63273614 - L2 LINE L2 -4 3268 3114 580 251 113 9 chr15 22423329 22423560 -63272194 - L1ME4a LINE L1 -1 6120 5866 835 318 36 75 chr15 22423596 22424118 -63271636 - MER34 LTR ERV1 -29 513 12 1684 179 7 4 chr15 22424716 22424995 -63270759 + AluJb SINE Alu 13 292 -20 720 240 112 34 chr15 22425601 22425834 -63269920 + MIR SINE MIR 12 262 0 784 86 0 14 chr15 22425870 22426115 -63269639 + AluSg SINE Alu 1 292 -17 341 222 152 10 chr15 22426586 22426685 -63269069 - L2 LINE L2 -7 3265 3153 1769 153 18 3 chr15 22426889 22427200 -63268554 - AluSq SINE Alu 0 315 1 1039 119 0 0 chr15 22427200 22427334 -63268420 - AluSq/x SINE Alu -177 135 2 276 220 55 88 chr15 22429290 22429381 -63266373 - MIR SINE MIR -85 123 36 454 118 0 0 chr15 22429448 22429516 -63266238 - AluS SINE Alu -10 299 232 1263 99 33 6 chr15 22429516 22429562 -63266192 - AluSq SINE Alu -127 186 143 2713 35 0 10 chr15 22429562 22429875 -63265879 - AluY SINE Alu -1 310 1 1263 99 33 6 chr15 22429875 22430009 -63265745 - AluSq SINE Alu -170 143 1 233 304 84 60 chr15 22430036 22430231 -63265523 - MIR SINE MIR -54 208 4 27 29 0 0 chr15 22431104 22431138 -63264616 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr15 22431150 22431188 -63264566 + GC_rich Low_complexity Low_complexity 1 38 0 236 218 36 0 chr15 22432718 22432773 -63262981 - L1ME4a LINE L1 -81 6040 5984 202 247 93 93 chr15 22433210 22433307 -63262447 + L2 LINE L2 1915 2011 -1303 371 321 180 33 chr15 22433469 22433896 -63261858 + L2 LINE L2 2245 2734 -580 2367 86 3 0 chr15 22434349 22434652 -63261102 + AluY SINE Alu 1 304 -7 207 244 0 122 chr15 22434687 22434769 -63260985 + MER91A DNA MER1_type 1 72 -118 185 210 161 32 chr15 22435523 22435585 -63260169 + MIR SINE MIR 56 125 -83 183 42 0 0 chr15 22436185 22436209 -63259545 + (TA)n Simple_repeat Simple_repeat 2 25 0 2221 82 0 20 chr15 22436209 22436502 -63259252 - AluY SINE Alu -24 287 1 1256 159 40 49 chr15 22437410 22437636 -63258118 - MER58A DNA MER1_type 0 224 1 227 261 159 57 chr15 22438023 22438199 -63257555 + MIR SINE MIR 37 230 -32 21 36 0 0 chr15 22438318 22438346 -63257408 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr15 22438360 22438416 -63257338 + AT_rich Low_complexity Low_complexity 1 56 0 2184 109 0 13 chr15 22438645 22438948 -63256806 + AluSg SINE Alu 1 299 -11 2244 122 3 0 chr15 22439312 22439623 -63256131 - AluSx SINE Alu 0 312 1 218 186 157 57 chr15 22440007 22440077 -63255677 - L2 LINE L2 -5 3267 3191 1918 123 20 20 chr15 22441088 22441388 -63254366 - AluSx SINE Alu -12 300 1 262 239 97 60 chr15 22441833 22441967 -63253787 - MIR SINE MIR 0 262 124 2374 92 0 0 chr15 22442362 22442657 -63253097 - AluSx SINE Alu -15 297 3 1766 131 99 26 chr15 22442682 22442995 -63252759 - MER44D DNA MER2_type -3 606 1 1514 156 35 96 chr15 22445170 22445484 -63250270 - AluJo SINE Alu -7 295 1 1693 144 59 0 chr15 22446455 22446725 -63249029 - AluSx SINE Alu -26 286 1 25 31 0 0 chr15 22448163 22448195 -63247559 + AT_rich Low_complexity Low_complexity 1 32 0 923 139 0 0 chr15 22449289 22449418 -63246336 - Tigger7 DNA MER2_type -1 2586 2458 3545 156 55 11 chr15 22449426 22450066 -63245688 - Tigger7 DNA MER2_type -1819 668 1 381 103 0 17 chr15 22450794 22450852 -63244902 - AluS SINE Alu -232 71 15 1345 129 47 13 chr15 22451084 22451317 -63244437 + MER96B DNA MER1_type? 1 241 -176 663 123 9 9 chr15 22451438 22451544 -63244210 + MER50 LTR ERV1 499 604 -130 2267 188 9 22 chr15 22451760 22452212 -63243542 - L1MB7 LINE L1 -136 6048 5603 181 321 19 0 chr15 22452640 22452693 -63243061 - L2 LINE L2 -8 3305 3252 193 375 0 0 chr15 22452843 22452939 -63242815 + L2 LINE L2 1748 1843 -1471 2053 120 0 7 chr15 22453016 22453315 -63242439 - AluSq SINE Alu -16 297 1 4580 190 48 31 chr15 22453357 22454373 -63241381 + Cheshire DNA MER1_type 7 1039 -1381 4291 161 63 72 chr15 22454376 22454842 -63240912 + Cheshire DNA MER1_type 1397 1866 -554 834 112 0 0 chr15 22454842 22454949 -63240805 + U6 snRNA snRNA 1 107 0 4291 161 63 72 chr15 22454949 22455008 -63240746 + Cheshire DNA MER1_type 1866 1924 -496 2337 93 0 6 chr15 22455008 22455319 -63240435 + AluSg SINE Alu 1 309 -1 4291 161 63 72 chr15 22455319 22455433 -63240321 + Cheshire DNA MER1_type 1924 2038 -382 2243 79 17 7 chr15 22455433 22455725 -63240029 + AluY SINE Alu 1 295 -16 4291 161 63 72 chr15 22455725 22456117 -63239637 + Cheshire DNA MER1_type 2038 2420 0 528 265 205 44 chr15 22456272 22456657 -63239097 + L2 LINE L2 2529 2975 -339 1983 215 75 18 chr15 22456840 22457333 -63238421 + MER74B LTR ERVL 52 572 -50 296 290 80 0 chr15 22457408 22457508 -63238246 - MLT1L LTR MaLR -8 607 500 364 288 45 0 chr15 22457633 22457765 -63237989 - MLT1L LTR MaLR -312 303 166 451 209 11 22 chr15 22458057 22458148 -63237606 - MER5A DNA MER1_type -9 180 91 3310 214 87 112 chr15 22459615 22460184 -63235570 + L2 LINE L2 1587 2169 -1144 2297 97 10 0 chr15 22460184 22460483 -63235271 - AluSp SINE Alu -11 302 1 3310 214 87 112 chr15 22460483 22461459 -63234295 + L2 LINE L2 2169 3097 -216 1944 146 0 25 chr15 22461727 22462043 -63233711 - AluSg SINE Alu 0 310 3 1514 35 0 0 chr15 22462205 22462376 -63233378 - L1PA5 LINE L1 0 6154 5984 249 33 0 0 chr15 22463399 22463429 -63232325 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2280 120 37 142 chr15 22464313 22464416 -63231338 - MLT2C2 LTR ERVL 0 464 352 405 0 0 0 chr15 22464416 22464461 -63231293 + (GA)n Simple_repeat Simple_repeat 2 46 0 2280 120 37 142 chr15 22464461 22464629 -63231125 - MLT2C2 LTR ERVL -112 352 270 2234 95 3 41 chr15 22464629 22464946 -63230808 - AluSx SINE Alu -6 306 2 2280 120 37 142 chr15 22464946 22465189 -63230565 - MLT2C2 LTR ERVL -194 270 3 2097 133 0 0 chr15 22465481 22465766 -63229988 + AluSx SINE Alu 1 285 -27 2135 128 3 6 chr15 22466237 22466549 -63229205 + AluSx SINE Alu 1 311 -1 2213 107 7 0 chr15 22466698 22466997 -63228757 - AluSp SINE Alu -12 301 1 2312 82 3 3 chr15 22468525 22468819 -63226935 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 22469327 22469353 -63226401 + AT_rich Low_complexity Low_complexity 1 26 0 2252 98 0 3 chr15 22469535 22469830 -63225924 - AluSq SINE Alu -12 301 8 1500 203 70 0 chr15 22470544 22470657 -63225097 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 22470657 22470679 -63225075 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 1500 203 70 0 chr15 22470679 22470851 -63224903 + AluJo SINE Alu 105 306 -6 2577 26 3 13 chr15 22471474 22471776 -63223978 + AluY SINE Alu 1 299 -12 2031 156 0 3 chr15 22471914 22472222 -63223532 - AluJb SINE Alu -5 307 1 2164 120 7 10 chr15 22472590 22472899 -63222855 - AluSx SINE Alu -4 308 1 514 295 70 20 chr15 22473144 22473344 -63222410 - MIR SINE MIR -50 212 3 284 226 160 44 chr15 22473696 22473876 -63221878 + MER5A DNA MER1_type 27 187 -2 305 259 208 4 chr15 22474272 22474401 -63221353 - MER5B DNA MER1_type -21 168 1 216 176 0 0 chr15 22474407 22474441 -63221313 - MIR SINE MIR -56 152 119 2318 106 0 0 chr15 22474578 22474880 -63220874 - AluSg SINE Alu -8 302 1 2337 198 83 27 chr15 22475224 22475326 -63220428 + MLT1G LTR MaLR 9 104 -486 830 223 77 59 chr15 22475326 22475476 -63220278 - MER58A DNA MER1_type -2196 224 67 2397 107 0 0 chr15 22475476 22475784 -63219970 - AluSg SINE Alu 0 310 3 830 223 77 59 chr15 22475784 22475853 -63219901 - MER58A DNA MER1_type -2353 67 1 2337 198 83 27 chr15 22475853 22476301 -63219453 + MLT1G LTR MaLR 104 590 0 472 229 50 14 chr15 22476594 22476734 -63219020 + MER31-int LTR ERV1 1043 1187 -3749 367 240 7 75 chr15 22476745 22476891 -63218863 - LTR27 LTR ERV1 -7 629 494 421 108 26 43 chr15 22476952 22477034 -63218720 - LTR28 LTR ERV1 -462 558 488 1856 128 16 22 chr15 22477923 22478235 -63217519 + AluSx SINE Alu 1 310 -2 808 150 0 50 chr15 22478591 22478731 -63217023 - FLAM_C SINE Alu 0 133 1 1974 139 13 3 chr15 22479589 22479892 -63215862 - AluSx SINE Alu -6 306 1 1416 152 9 0 chr15 22480001 22480225 -63215529 - AluJb SINE Alu -3 309 84 2349 71 34 0 chr15 22480434 22480730 -63215024 + AluSc SINE Alu 1 306 -3 984 231 54 0 chr15 22481228 22481488 -63214266 - HAL1 LINE L1 -951 1556 1283 1322 153 2 89 chr15 22481503 22481797 -63213957 - MER4B LTR ERV1 -278 332 87 1289 74 62 0 chr15 22481956 22482132 -63213622 + AluSc SINE Alu 120 306 -3 996 227 54 0 chr15 22482624 22482884 -63212870 - HAL1 LINE L1 -951 1556 1283 2123 95 61 3 chr15 22482899 22483234 -63212520 - MER4B LTR ERV1 -278 332 1 2177 108 30 0 chr15 22483287 22483584 -63212170 + AluSg SINE Alu 1 306 -4 462 191 0 43 chr15 22483821 22483915 -63211839 + MER21B LTR ERV1 1 90 -773 2948 207 46 42 chr15 22484063 22484327 -63211427 + MER21B LTR ERV1 98 359 -504 3396 126 2 72 chr15 22484327 22484732 -63211022 + LTR26B LTR ERV1 1 356 -175 2140 103 24 3 chr15 22484732 22485024 -63210730 + AluSq SINE Alu 1 298 -15 3396 126 2 72 chr15 22485024 22485189 -63210565 + LTR26B LTR ERV1 356 531 0 2948 207 46 42 chr15 22485189 22485635 -63210119 + MER21B LTR ERV1 359 811 -52 2344 161 57 28 chr15 22485659 22486081 -63209673 - Tigger2a DNA MER2_type 0 434 1 2013 128 0 0 chr15 22486310 22486598 -63209156 + AluJb SINE Alu 1 288 -24 30 45 0 0 chr15 22486781 22486825 -63208929 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr15 22486939 22486973 -63208781 + AT_rich Low_complexity Low_complexity 1 34 0 2213 85 7 14 chr15 22487200 22487494 -63208260 - AluY SINE Alu -19 292 1 583 113 258 8 chr15 22487687 22487811 -63207943 - MER4C LTR ERV1 -20 445 291 1342 143 133 48 chr15 22487866 22488181 -63207573 - MER4A LTR ERV1 -322 342 1 827 174 28 0 chr15 22488181 22488325 -63207429 + FAM SINE Alu 26 173 -12 1336 206 32 14 chr15 22488374 22488651 -63207103 + AluJo SINE Alu 1 282 -30 378 0 0 0 chr15 22488681 22488723 -63207031 + (CA)n Simple_repeat Simple_repeat 2 43 0 332 43 0 21 chr15 22488777 22488824 -63206930 + (TG)n Simple_repeat Simple_repeat 2 47 0 3553 106 0 26 chr15 22589001 22589316 -63106438 + L1PA6 LINE L1 5475 5772 -382 2189 82 4 0 chr15 22589316 22589586 -63106168 + AluY SINE Alu 35 305 -6 3553 106 0 26 chr15 22589586 22589799 -63105955 + L1PA6 LINE L1 5772 5989 -165 2823 118 29 0 chr15 22590152 22590569 -63105185 - Tigger1 DNA MER2_type -1191 1227 799 356 127 0 20 chr15 22590586 22590658 -63105096 - AluJo SINE Alu -166 136 82 247 88 0 0 chr15 22590736 22590770 -63104984 - Tigger1 DNA MER2_type -1821 597 564 713 143 0 0 chr15 22590783 22590888 -63104866 + AluSq/x SINE Alu 2 106 -206 262 278 16 50 chr15 22590942 22591347 -63104407 + GA-rich Low_complexity Low_complexity 1 391 0 27 0 0 0 chr15 22591827 22591854 -63103900 + GC_rich Low_complexity Low_complexity 1 27 0 907 134 123 6 chr15 22592330 22592501 -63103253 - Tigger1 DNA MER2_type 0 2418 2228 518 182 10 0 chr15 22592548 22592647 -63103107 + FRAM SINE Alu 46 145 -31 1048 101 7 0 chr15 22592751 22592889 -63102865 - AluSq/x SINE Alu -173 139 1 452 224 28 19 chr15 22593364 22593471 -63102283 + L2 LINE L2 3144 3251 -21 382 300 94 0 chr15 22593528 22593698 -63102056 + MIR SINE MIR 70 255 -7 22 88 0 0 chr15 22594240 22594297 -63101457 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr15 22594328 22594351 -63101403 + AT_rich Low_complexity Low_complexity 1 23 0 2055 133 0 10 chr15 22594351 22594645 -63101109 - AluSx SINE Alu -21 291 1 486 312 82 68 chr15 22594921 22595156 -63100598 + MLT1K LTR MaLR 2 232 -356 2396 98 0 0 chr15 22595156 22595452 -63100302 - AluSx SINE Alu -16 296 1 486 312 82 68 chr15 22595452 22595742 -63100012 + MLT1K LTR MaLR 232 534 -54 3751 185 127 14 chr15 22595860 22596869 -63098885 - MER52A LTR ERV1 -6 1272 1 376 129 14 29 chr15 22596981 22597051 -63098703 + AluS SINE Alu 232 300 0 211 316 13 0 chr15 22597095 22597171 -63098583 - MIR SINE MIR -30 232 156 * 974 252 4 46 chr15 22597169 22597431 -63098323 + MIR SINE MIR 12 262 0 317 111 0 0 chr15 22597461 22597506 -63098248 - MER4D LTR ERV1 -77 826 782 364 324 29 22 chr15 22597509 22597648 -63098106 - MIR SINE MIR -122 140 1 1855 79 4 0 chr15 22598063 22598303 -63097451 - MER41A LTR ERV1 0 554 314 226 188 0 0 chr15 22598298 22598346 -63097408 - Alu SINE Alu 0 302 255 * 995 115 0 7 chr15 22598348 22598487 -63097267 - AluSq/x SINE Alu -173 139 2 2499 85 0 3 chr15 22598488 22598818 -63096936 - MER41A LTR ERV1 -225 329 1 3200 163 34 63 chr15 22598990 22599782 -63095972 + L1MB3 LINE L1 4644 5458 -725 809 207 24 12 chr15 22599782 22599946 -63095808 + FAM SINE Alu 1 166 -9 3200 163 34 63 chr15 22599946 22600001 -63095753 + L1MB3 LINE L1 5458 5513 -670 216 0 0 0 chr15 22600001 22600025 -63095729 + (CA)n Simple_repeat Simple_repeat 2 25 0 3200 163 34 63 chr15 22600025 22600099 -63095655 + L1MB3 LINE L1 5513 5588 -595 2080 145 0 0 chr15 22600099 22600396 -63095358 + AluSx SINE Alu 3 299 -13 3200 163 34 63 chr15 22600396 22600762 -63094992 + L1MB3 LINE L1 5588 5899 -284 671 178 67 15 chr15 22600762 22600897 -63094857 + AluJo SINE Alu 2 143 -169 627 280 66 44 chr15 22602476 22602746 -63093008 + LTR33A LTR ERVL 13 288 -235 357 148 9 0 chr15 22602746 22602821 -63092933 - LTR41 LTR ERVL 0 795 701 826 158 0 0 chr15 22602822 22602949 -63092805 + FLAM_C SINE Alu 1 127 -16 1171 241 180 52 chr15 22602966 22603538 -63092216 - LTR41 LTR ERVL -54 719 74 311 167 2 17 chr15 22603538 22603607 -63092147 - MLT1E3 LTR MaLR 0 624 322 1639 236 38 47 chr15 22603707 22603806 -63091948 - L1M4 LINE L1 -1513 4633 4535 1675 164 11 11 chr15 22603806 22604087 -63091667 + AluJo SINE Alu 1 281 -31 1639 236 38 47 chr15 22604087 22604517 -63091237 - L1M4 LINE L1 -1611 4535 4109 * 14541 19 8 1 chr15 22604513 22606443 -63089311 + L1P1 LINE L1 3705 5645 -510 912 221 53 12 chr15 22606563 22606807 -63088947 + AluSq SINE Alu 54 307 -6 542 184 142 0 chr15 22607184 22607325 -63088429 - MIR SINE MIR -27 235 75 276 169 208 26 chr15 22607478 22607555 -63088199 + MIR SINE MIR 20 110 -98 2138 114 3 7 chr15 22607994 22608284 -63087470 - AluSx SINE Alu -23 289 1 296 305 53 15 chr15 22608326 22608457 -63087297 - MER77 LTR ERV1 -62 543 408 532 176 0 0 chr15 22608501 22608586 -63087168 + FRAM SINE Alu 73 157 -19 440 263 12 22 chr15 22608672 22608824 -63086930 - MER21B LTR ERV1 -398 207 17 2357 171 25 78 chr15 22608824 22609208 -63086546 - L1M LINE L1 -801 5345 4942 2237 89 24 0 chr15 22609208 22609501 -63086253 - AluSp SINE Alu -13 300 1 2357 171 25 78 chr15 22609501 22609594 -63086160 - L1M LINE L1 -1204 4942 4846 2105 145 0 0 chr15 22609594 22609898 -63085856 - AluJb SINE Alu -8 304 1 2357 171 25 78 chr15 22609898 22610070 -63085684 - L1M LINE L1 -1300 4846 4747 1668 150 35 3 chr15 22610085 22610372 -63085382 - AluSx SINE Alu -16 296 1 259 317 46 83 chr15 22610629 22610658 -63085096 - L2 LINE L2 -217 3055 3026 2307 79 0 30 chr15 22610658 22611004 -63084750 - AluSx SINE Alu 0 312 1 259 317 46 83 chr15 22611004 22611081 -63084673 - L2 LINE L2 -246 3026 2948 386 209 102 94 chr15 22611081 22611335 -63084419 - MER112 DNA MER1_type 0 256 1 259 317 46 83 chr15 22611335 22611467 -63084287 - L2 LINE L2 -324 2948 2825 285 333 7 28 chr15 22611896 22612037 -63083717 + MIR3 SINE MIR 65 202 -6 796 103 7 97 chr15 22613029 22613174 -63082580 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 22613517 22614042 -63081712 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 22614748 22615039 -63080715 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 22615290 22615426 -63080328 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 22615426 22615755 -63079999 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 22615755 22615925 -63079829 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 22616016 22616325 -63079429 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 22616348 22616457 -63079297 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 22616470 22616596 -63079158 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 22616648 22617176 -63078578 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 22617179 22617335 -63078419 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 22617349 22617401 -63078353 + GA-rich Low_complexity Low_complexity 3 57 0 553 174 0 0 chr15 22617570 22617668 -63078086 + AluSg/x SINE Alu 212 309 -1 6309 162 21 0 chr15 22617685 22618735 -63077019 + L1MC1 LINE L1 5254 6325 -8 2343 89 13 19 chr15 22618735 22619048 -63076706 + AluSp SINE Alu 1 311 -2 770 234 103 38 chr15 22619131 22619488 -63076266 + MLT1I LTR MaLR 1 409 0 1734 111 12 95 chr15 22619591 22619736 -63076018 + AluSx SINE Alu 1 106 -206 2884 3 0 0 chr15 22619736 22620038 -63075716 + AluYa5 SINE Alu 1 302 -9 1734 111 12 95 chr15 22620038 22620217 -63075537 + AluSx SINE Alu 106 298 -14 1989 136 7 7 chr15 22620250 22620544 -63075210 + AluJb SINE Alu 1 294 -18 1283 165 4 57 chr15 22620598 22620846 -63074908 + AluJo SINE Alu 5 239 -73 29 61 0 0 chr15 22621249 22621282 -63074472 + AT_rich Low_complexity Low_complexity 1 33 0 355 93 0 0 chr15 22621436 22621490 -63074264 + AluSp/q SINE Alu 246 299 -4 205 171 0 24 chr15 22621613 22621654 -63074100 + GA-rich Low_complexity Low_complexity 5 44 0 743 110 0 0 chr15 22621931 22622031 -63073723 + AluJb SINE Alu 160 259 -53 207 0 0 0 chr15 22622142 22622165 -63073589 + (A)n Simple_repeat Simple_repeat 1 23 0 2134 126 0 16 chr15 22622319 22622629 -63073125 - AluSq SINE Alu -8 305 1 1774 157 61 28 chr15 22622670 22623033 -63072721 - THE1C LTR MaLR 0 375 1 1715 182 48 8 chr15 22623355 22623706 -63072048 - MLT1A1 LTR MaLR 0 365 1 2484 80 3 10 chr15 22623752 22624066 -63071688 - AluSp SINE Alu -1 312 1 5898 113 29 1 chr15 22624254 22625122 -63070632 - L1PA13 LINE L1 0 6163 5272 813 209 10 20 chr15 22625259 22625455 -63070299 - AluSp SINE Alu 0 313 120 22 35 0 0 chr15 22625643 22625672 -63070082 + AT_rich Low_complexity Low_complexity 1 29 0 1086 196 117 32 chr15 22625857 22626138 -63069616 - MLT1A1 LTR MaLR -4 361 57 1446 133 5 5 chr15 22626138 22626348 -63069406 + AluSg/x SINE Alu 86 295 -17 727 149 0 0 chr15 22626684 22626805 -63068949 - AluSg/x SINE Alu -1 311 191 1957 120 11 3 chr15 22626919 22627202 -63068552 + AluSx SINE Alu 23 307 -5 5120 111 0 10 chr15 22627289 22628032 -63067722 - LTR17 LTR ERV1 0 780 1 2010 132 0 39 chr15 22628090 22628401 -63067353 - AluSx SINE Alu -13 299 1 3924 127 52 0 chr15 22628929 22629511 -63066243 + LTR9 LTR ERV1 1 612 0 407 297 54 7 chr15 22629664 22629812 -63065942 - MIR SINE MIR -73 189 35 1933 137 45 3 chr15 22629872 22630164 -63065590 - AluJb SINE Alu -8 304 1 2183 114 0 7 chr15 22630569 22630866 -63064888 - AluSg SINE Alu -15 295 1 30 59 0 0 chr15 22630866 22630917 -63064837 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr15 22631048 22631071 -63064683 + (TG)n Simple_repeat Simple_repeat 2 24 0 2296 114 0 0 chr15 22631154 22631460 -63064294 - AluSg SINE Alu -2 308 3 2173 89 67 8 chr15 22631473 22631841 -63063913 - LTR7 LTR ERV1 0 450 1 330 284 53 68 chr15 22632278 22632468 -63063286 + MIR SINE MIR 30 216 -46 21 36 0 0 chr15 22632484 22632512 -63063242 + AT_rich Low_complexity Low_complexity 1 28 0 1228 274 60 3 chr15 22632882 22633214 -63062540 + MLT1H1 LTR MaLR 12 362 -193 1697 110 73 4 chr15 22633323 22633568 -63062186 + AluSx SINE Alu 37 298 -14 810 207 58 5 chr15 22633568 22633765 -63061989 - L1MC/D LINE L1 -503 5661 5483 1770 188 35 49 chr15 22633783 22634208 -63061546 - L1MC/D LINE L1 -986 5160 4742 728 208 35 74 chr15 22634272 22634503 -63061251 - L1ME2 LINE L1 -127 6037 5816 186 43 0 0 chr15 22634970 22634993 -63060761 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1378 241 34 13 chr15 22636627 22637008 -63058746 - MLT2C1 LTR ERVL -8 389 1 182 300 113 0 chr15 22637671 22637751 -63058003 - L2 LINE L2 -252 3020 2932 363 147 27 13 chr15 22638042 22638117 -63057637 - L1MDa LINE L1 -6188 352 277 1349 147 0 50 chr15 22638166 22638404 -63057350 - AluJo SINE Alu 0 312 87 1785 161 0 38 chr15 22638422 22638738 -63057016 - AluJo SINE Alu -8 304 1 266 236 0 0 chr15 22638745 22638817 -63056937 - L1ME2 LINE L1 -1 6177 6098 2547 63 0 0 chr15 22638818 22639120 -63056634 - AluY SINE Alu -9 302 1 22 0 0 0 chr15 22639120 22639142 -63056612 + AT_rich Low_complexity Low_complexity 1 22 0 291 128 21 0 chr15 22639380 22639427 -63056327 + MER58 DNA MER1_type 2373 2420 0 449 171 0 0 chr15 22639782 22639858 -63055896 + AluSg/x SINE Alu 207 282 -27 2225 121 3 0 chr15 22639896 22640201 -63055553 + AluSx SINE Alu 1 306 -6 320 136 68 17 chr15 22640694 22640753 -63055001 - MER81 DNA DNA -49 65 4 182 286 0 0 chr15 22641529 22641578 -63054176 - MIR SINE MIR -45 217 169 2218 118 0 7 chr15 22642097 22642394 -63053360 - AluSx SINE Alu -17 295 1 198 261 0 76 chr15 22642497 22642589 -63053165 - MIR SINE MIR -54 208 124 1981 146 3 7 chr15 22642904 22643246 -63052508 + AluSq SINE Alu 1 313 0 2102 141 0 0 chr15 22643636 22643948 -63051806 - AluSx SINE Alu 0 312 1 387 0 0 0 chr15 22644344 22644387 -63051367 + (CA)n Simple_repeat Simple_repeat 2 44 0 2139 176 54 54 chr15 22644764 22645201 -63050553 + MLT1D LTR MaLR 1 441 -64 2104 92 3 3 chr15 22645201 22645512 -63050242 + AluY SINE Alu 1 311 0 2139 176 54 54 chr15 22645512 22645574 -63050180 + MLT1D LTR MaLR 440 501 -4 3511 148 28 20 chr15 22645973 22646085 -63049669 - MER41B LTR ERV1 -27 608 498 2538 61 0 0 chr15 22646085 22646381 -63049373 + AluY SINE Alu 2 297 -14 3511 148 28 20 chr15 22646381 22646871 -63048883 - MER41B LTR ERV1 -137 498 1 677 193 29 29 chr15 22647122 22647262 -63048492 + AluJo SINE Alu 2 141 -171 748 161 7 36 chr15 22647606 22647743 -63048011 + FLAM_C SINE Alu 1 133 0 2108 91 46 3 chr15 22647883 22648168 -63047586 - AluSx SINE Alu -15 297 1 2529 112 76 217 chr15 22648188 22648312 -63047442 - MER4D LTR ERV1 0 832 692 4395 116 8 0 chr15 22648312 22648941 -63046813 - MER41B LTR ERV1 -1 634 1 2529 112 76 217 chr15 22648941 22649085 -63046669 - MER4D LTR ERV1 -140 692 529 722 193 0 14 chr15 22649085 22649225 -63046529 + FLAM_C SINE Alu 6 143 0 2529 112 76 217 chr15 22649225 22649300 -63046454 - MER4D LTR ERV1 -303 529 445 1944 118 0 49 chr15 22649300 22649605 -63046149 - AluSq SINE Alu -23 290 1 2529 112 76 217 chr15 22649605 22649616 -63046138 - MER4D LTR ERV1 -387 445 434 2172 118 3 3 chr15 22649616 22649912 -63045842 - AluSp SINE Alu -16 297 2 2529 112 76 217 chr15 22649912 22650464 -63045290 - MER4D LTR ERV1 -398 434 1 1021 227 140 12 chr15 22650584 22650906 -63044848 - MLT1D LTR MaLR -13 492 130 677 111 10 0 chr15 22650907 22651006 -63044748 - AluSg/x SINE Alu -20 290 191 540 195 70 8 chr15 22651006 22651134 -63044620 - MLT1D LTR MaLR -367 138 3 1228 128 41 0 chr15 22652632 22652828 -63042926 + MER105 DNA DNA 1 204 0 1119 237 128 11 chr15 22653578 22653936 -63041818 + L1MC4a LINE L1 5511 5910 -1898 196 333 125 61 chr15 22654131 22654395 -63041359 + L2 LINE L2 2992 3272 0 189 0 0 0 chr15 22654851 22654872 -63040882 + (TC)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr15 22655006 22655035 -63040719 + AT_rich Low_complexity Low_complexity 1 29 0 2114 143 0 0 chr15 22655086 22655380 -63040374 - AluSx SINE Alu -13 299 6 24 0 0 0 chr15 22656090 22656114 -63039640 + AT_rich Low_complexity Low_complexity 1 24 0 1093 134 0 0 chr15 22656117 22656274 -63039480 - AluJo/FRAM SINE Alu -9 293 137 492 173 0 0 chr15 22656276 22656351 -63039403 - AluJ/FLAM SINE Alu -236 76 2 815 50 0 0 chr15 22656661 22656760 -63038994 + HY3 scRNA scRNA 1 99 -2 21 0 0 0 chr15 22656760 22656781 -63038973 + AT_rich Low_complexity Low_complexity 1 21 0 665 126 87 0 chr15 22657791 22657894 -63037860 + AluSp SINE Alu 2 113 -200 2337 211 26 4 chr15 22658016 22658524 -63037230 - L1M4 LINE L1 -2022 4124 3606 304 185 0 19 chr15 22658525 22658579 -63037175 - MER44D DNA MER2_type 0 609 557 * 572 136 271 0 chr15 22658575 22658715 -63037039 - MER46B DNA MER2_type -182 54 2 * 1405 138 38 50 chr15 22658715 22658973 -63036781 - MER44D DNA MER2_type -80 529 5 1488 247 44 7 chr15 22658977 22659430 -63036324 - L1M4 LINE L1 -2540 3606 3137 216 0 0 0 chr15 22659543 22659567 -63036187 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1619 158 14 64 chr15 22659574 22659871 -63035883 - AluJo SINE Alu -30 282 1 409 299 78 54 chr15 22660168 22660335 -63035419 - MIR3 SINE MIR -32 176 6 1886 156 0 17 chr15 22661108 22661410 -63034344 + AluJo SINE Alu 6 302 -10 734 188 0 15 chr15 22661762 22661895 -63033859 + FLAM_C SINE Alu 1 131 -2 2385 95 0 16 chr15 22663250 22663566 -63032188 - AluSq SINE Alu -2 311 1 728 178 0 0 chr15 22663663 22663781 -63031973 - FLAM_C SINE Alu -24 119 2 23 0 0 0 chr15 22664401 22664424 -63031330 + AT_rich Low_complexity Low_complexity 1 23 0 2421 84 0 3 chr15 22665169 22665468 -63030286 + AluSc SINE Alu 1 298 -11 24 32 0 0 chr15 22665956 22665987 -63029767 + AT_rich Low_complexity Low_complexity 1 31 0 233 115 39 58 chr15 22666235 22666287 -63029467 + MER5B DNA MER1_type 126 176 -2 187 256 181 45 chr15 22666306 22666439 -63029315 - MER5B DNA MER1_type -4 174 24 863 200 0 0 chr15 22666860 22667029 -63028725 + FRAM SINE Alu 8 176 0 2301 97 7 10 chr15 22667574 22667882 -63027872 + AluSx SINE Alu 3 309 -3 265 86 0 78 chr15 22667890 22668134 -63027620 + AluSx SINE Alu 1 318 0 21 0 0 0 chr15 22668331 22668352 -63027402 + AT_rich Low_complexity Low_complexity 1 21 0 1135 57 0 0 chr15 22668491 22668631 -63027123 - AluY SINE Alu -13 298 159 217 67 22 22 chr15 22668755 22668800 -63026954 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 634 77 28 44 chr15 22668802 22668984 -63026770 + (TA)n Simple_repeat Simple_repeat 2 180 0 209 135 58 10 chr15 22669126 22669224 -63026530 + (TA)n Simple_repeat Simple_repeat 1 104 0 2372 65 0 14 chr15 22669224 22669518 -63026236 - AluY SINE Alu -21 290 1 737 162 0 0 chr15 22669562 22669679 -63026075 - AluJb SINE Alu -194 118 2 948 267 89 11 chr15 22669759 22670040 -63025714 - LTR16B LTR ERVL -161 303 1 540 230 155 0 chr15 22671174 22671348 -63024406 + MIR SINE MIR 54 254 -8 1746 124 69 4 chr15 22672460 22672735 -63023019 + AluSg SINE Alu 1 293 -17 2062 125 38 3 chr15 22673286 22673606 -63022148 + MLT2D LTR ERVL 1 331 -83 1170 78 13 0 chr15 22673665 22673819 -63021935 + AluSc SINE Alu 149 304 -5 367 230 36 50 chr15 22673862 22674001 -63021753 - LTR47B LTR ERVL -27 416 280 391 307 22 17 chr15 22674895 22675074 -63020680 + CT-rich Low_complexity Low_complexity 1 180 0 308 185 31 31 chr15 22675108 22675238 -63020516 + CT-rich Low_complexity Low_complexity 4 133 0 209 180 20 0 chr15 22675246 22675296 -63020458 + C-rich Low_complexity Low_complexity 5 55 0 * 663 150 42 12 chr15 22675292 22675459 -63020295 + CT-rich Low_complexity Low_complexity 4 175 0 224 71 0 0 chr15 22675459 22675487 -63020267 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 873 141 13 47 chr15 22675490 22675639 -63020115 - FRAM SINE Alu -40 136 1 2285 110 3 3 chr15 22676258 22676567 -63019187 - AluSg SINE Alu -1 309 1 195 338 100 25 chr15 22676674 22676914 -63018840 - L2 LINE L2 0 3272 3015 1163 137 0 27 chr15 22677454 22677637 -63018117 + AluSg/x SINE Alu 111 288 -24 243 0 0 0 chr15 22677650 22677677 -63018077 + (TA)n Simple_repeat Simple_repeat 2 28 0 270 188 0 0 chr15 22677802 22677850 -63017904 + MER20B DNA MER1_type 735 782 -1 1586 167 36 102 chr15 22679222 22679295 -63016459 - Charlie4a DNA MER1_type -1456 505 429 2094 92 25 0 chr15 22679295 22679578 -63016176 - AluSx SINE Alu -22 290 1 1586 167 36 102 chr15 22679578 22679845 -63015909 - Charlie4a DNA MER1_type -1532 429 202 2421 95 0 0 chr15 22679845 22680151 -63015603 - AluSc SINE Alu -3 306 1 1586 167 36 102 chr15 22680151 22680282 -63015472 - Charlie4a DNA MER1_type -1759 202 64 1553 144 11 23 chr15 22680438 22680701 -63015053 - AluSx SINE Alu -16 296 37 212 229 21 0 chr15 22680734 22680782 -63014972 + MIR SINE MIR 106 154 -108 446 149 0 0 chr15 22681694 22681761 -63013993 + MLT1B LTR MaLR 28 94 -296 745 161 0 17 chr15 22681769 22681887 -63013867 + FLAM_A SINE Alu 8 123 -19 2014 153 0 13 chr15 22681892 22682206 -63013548 + AluSx SINE Alu 1 310 -2 1407 214 25 18 chr15 22682210 22682495 -63013259 + MLT1B LTR MaLR 104 390 0 347 182 149 25 chr15 22683428 22683549 -63012205 + MIR SINE MIR 119 254 -8 187 396 10 0 chr15 22683729 22683825 -63011929 - MIR3 SINE MIR -3 205 109 230 309 15 0 chr15 22685491 22685559 -63010195 + L2 LINE L2 3188 3256 -16 841 288 105 16 chr15 22685668 22685974 -63009780 - MER102b DNA MER1_type -7 334 2 190 216 0 0 chr15 22686609 22686646 -63009108 + L2 LINE L2 3267 3303 -10 2286 112 0 0 chr15 22686650 22686946 -63008808 - AluY SINE Alu -15 296 1 2354 86 7 7 chr15 22687536 22687837 -63007917 - AluSx SINE Alu -11 301 1 2134 217 46 37 chr15 22687956 22688518 -63007236 - MER74B LTR ERVL 0 622 56 1341 233 90 33 chr15 22688799 22689220 -63006534 + MLT2B1 LTR ERVL 1 445 -75 596 179 41 48 chr15 22689462 22689607 -63006147 + MER69 DNA AcHobo 2383 2526 0 314 230 58 35 chr15 22689822 22689909 -63005845 + MIR SINE MIR 56 144 -64 567 241 73 35 chr15 22690156 22690388 -63005366 - L1MC5 LINE L1 -56 7905 7665 1835 100 4 0 chr15 22690458 22690697 -63005057 + AluSq SINE Alu 41 280 -33 189 0 0 0 chr15 22690703 22690724 -63005030 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2173 118 0 0 chr15 22690780 22691076 -63004678 - AluSg SINE Alu -14 296 1 2216 107 0 23 chr15 22692074 22692383 -63003371 - AluSx SINE Alu -10 302 1 1740 146 46 17 chr15 22692441 22692743 -63003011 - AluSx SINE Alu -1 311 1 493 216 0 45 chr15 22692743 22692854 -63002900 - AluSg/x SINE Alu -20 290 185 3375 144 204 30 chr15 22692854 22693554 -63002200 - LTR12 LTR ERV1 0 826 5 2346 183 30 27 chr15 22693570 22694170 -63001584 - pTR5 LTR ERV1 -1094 1344 743 1198 141 0 45 chr15 22694170 22694369 -63001385 - AluJo SINE Alu -122 190 1 216 97 0 0 chr15 22694446 22694477 -63001277 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1861 145 54 7 chr15 22694479 22694775 -63000979 - AluSx SINE Alu -2 310 1 228 35 0 0 chr15 22694927 22694956 -63000798 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1393 169 0 49 chr15 22694956 22695240 -63000514 - AluSx SINE Alu -32 280 11 243 0 0 0 chr15 22695241 22695268 -63000486 + (T)n Simple_repeat Simple_repeat 1 27 0 1957 117 52 7 chr15 22695293 22695583 -63000171 + AluSx SINE Alu 1 303 -9 1214 209 48 84 chr15 22695740 22696436 -62999318 - MER21B LTR ERV1 -125 738 1 1769 146 75 0 chr15 22696459 22696739 -62999015 + AluSx SINE Alu 1 301 -11 3660 122 80 16 chr15 22697208 22697783 -62997971 - LTR9 LTR ERV1 0 612 1 2351 89 3 13 chr15 22698287 22698590 -62997164 - AluSg SINE Alu -10 300 1 538 317 37 0 chr15 22698675 22698839 -62996915 + MIR SINE MIR 1 170 -92 1525 186 38 7 chr15 22698907 22699197 -62996557 - AluJb SINE Alu -13 299 1 264 239 269 37 chr15 22699202 22699398 -62996356 - L1ME4a LINE L1 -21 6100 5951 2246 121 0 9 chr15 22699398 22699713 -62996041 - AluSx SINE Alu 0 312 1 264 239 269 37 chr15 22699713 22699813 -62995941 - L1ME4a LINE L1 -170 5951 5735 368 198 18 36 chr15 22699940 22700051 -62995703 - L1ME4a LINE L1 -401 5720 5612 339 65 0 0 chr15 22701789 22701835 -62993919 + (TG)n Simple_repeat Simple_repeat 2 47 0 2035 200 10 45 chr15 22701989 22702473 -62993281 - MLT1C LTR MaLR 0 467 1 2208 112 0 29 chr15 22703605 22703919 -62991835 + AluSx SINE Alu 2 306 -6 195 278 56 28 chr15 22705545 22705617 -62990137 - L3 LINE CR1 -4 1573 1500 2154 117 3 3 chr15 22705633 22705923 -62989831 - AluSx SINE Alu -22 290 1 186 293 12 12 chr15 22706209 22706291 -62989463 + MIR SINE MIR 84 165 -97 2011 125 24 14 chr15 22707622 22707917 -62987837 - AluSq SINE Alu -15 298 1 313 232 105 0 chr15 22707928 22708023 -62987731 - MIR SINE MIR -73 189 85 240 224 0 17 chr15 22708354 22708412 -62987342 + CT-rich Low_complexity Low_complexity 2 58 0 21 36 0 0 chr15 22708823 22708851 -62986903 + AT_rich Low_complexity Low_complexity 1 28 0 780 283 69 12 chr15 22709207 22709337 -62986417 - MIR SINE MIR 0 262 141 1236 121 16 0 chr15 22709337 22709519 -62986235 - MER5A DNA MER1_type -4 185 1 780 283 69 12 chr15 22709519 22709635 -62986119 - MIR SINE MIR -121 141 2 331 286 92 74 chr15 22710372 22710589 -62985165 - L1ME4a LINE L1 -21 6100 5880 2240 93 0 10 chr15 22710616 22710916 -62984838 + AluSp SINE Alu 2 298 -15 2027 123 0 16 chr15 22711844 22712160 -62983594 - AluSx SINE Alu -1 311 1 391 270 0 0 chr15 22712165 22712254 -62983500 + L2 LINE L2 3225 3313 0 2290 93 0 0 chr15 22713220 22713522 -62982232 + AluSx SINE Alu 1 302 -10 251 198 54 90 chr15 22713522 22713633 -62982121 - L1MC4 LINE L1 -14 8028 7922 327 146 0 0 chr15 22713636 22713691 -62982063 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2788 231 53 56 chr15 22713742 22714153 -62981601 - L1MC4 LINE L1 -166 7876 7465 1871 124 3 24 chr15 22714153 22714468 -62981286 - AluSx SINE Alu 0 309 1 2788 231 53 56 chr15 22714468 22715105 -62980649 - L1MC4 LINE L1 -577 7465 6830 574 251 86 6 chr15 22715707 22715870 -62979884 - MER5B DNA MER1_type -2 176 1 1597 88 5 0 chr15 22715883 22716098 -62979656 + AluSg1 SINE Alu 1 216 -93 412 286 11 0 chr15 22716098 22716189 -62979565 - MIR3 SINE MIR -25 183 92 488 308 38 27 chr15 22716236 22716421 -62979333 + MER5A DNA MER1_type 1 187 -2 1631 173 3 25 chr15 22716537 22716855 -62978899 - AluJb SINE Alu -1 311 1 424 220 76 138 chr15 22716960 22717110 -62978644 - MER20B DNA MER1_type -475 308 183 1566 173 0 69 chr15 22717110 22717445 -62978309 - AluJo SINE Alu 0 312 1 424 220 76 138 chr15 22717445 22717585 -62978169 - MER20B DNA MER1_type -600 183 36 2117 87 7 7 chr15 22717747 22718033 -62977721 + AluSg SINE Alu 1 286 -24 255 170 0 0 chr15 22718033 22718080 -62977674 + GA-rich Low_complexity Low_complexity 2 48 0 271 314 0 66 chr15 22718253 22718374 -62977380 - L2 LINE L2 0 3272 3160 2728 85 3 0 chr15 22718952 22719306 -62976448 - THE1A LTR MaLR 0 355 1 299 258 45 0 chr15 22719518 22719585 -62976169 - LTR67 LTR ERVL -4 553 480 2124 110 3 0 chr15 22719585 22719885 -62975869 + AluSg1 SINE Alu 1 301 -8 299 258 45 0 chr15 22719885 22719906 -62975848 - LTR67 LTR ERVL -77 480 461 1782 136 3 44 chr15 22720368 22720690 -62975064 + AluSx SINE Alu 1 310 0 1752 171 7 3 chr15 22720916 22721225 -62974529 + AluJb SINE Alu 1 310 -2 1398 175 0 103 chr15 22721428 22721593 -62974161 + AluJb SINE Alu 1 119 -193 2006 147 0 0 chr15 22721593 22721899 -62973855 + AluSx SINE Alu 1 306 -6 1398 175 0 103 chr15 22721899 22722053 -62973701 + AluJb SINE Alu 119 287 -25 4452 148 22 12 chr15 22722060 22722819 -62972935 + L1M4c LINE L1 265 1031 -5353 366 236 209 0 chr15 22722819 22722929 -62972825 + FLAM_A SINE Alu 1 133 0 384 271 23 31 chr15 22722929 22723058 -62972696 + L1M4c LINE L1 949 1076 -5308 1126 112 41 6 chr15 22723058 22723227 -62972527 + AluSq SINE Alu 1 175 -138 1947 226 78 35 chr15 22723328 22723863 -62971891 - MLT1E1 LTR MaLR -91 563 6 250 204 0 19 chr15 22723864 22723918 -62971836 - LTR41 LTR ERVL -720 53 1 * 396 227 191 0 chr15 22723918 22724026 -62971728 + LTR33A LTR ERVL 284 412 -111 917 318 84 5 chr15 22724236 22724629 -62971125 - HERV16 LTR ERVL -2229 3535 3112 1311 291 45 19 chr15 22724667 22725086 -62970668 - HERV16 LTR ERVL -1990 3006 2577 1422 173 0 11 chr15 22725086 22725358 -62970396 - AluJb SINE Alu 0 312 44 686 298 133 19 chr15 22725786 22726101 -62969653 - HERV16 LTR ERVL -3915 1081 731 23 86 0 0 chr15 22726158 22726216 -62969538 + AT_rich Low_complexity Low_complexity 1 58 0 599 356 0 0 chr15 22726681 22726869 -62968885 - HERV16 LTR ERVL -4335 661 474 1442 151 111 15 chr15 22726871 22727142 -62968612 - AluJb SINE Alu -15 297 1 2137 100 0 40 chr15 22727151 22727472 -62968282 - AluSg SINE Alu -2 308 1 339 298 14 28 chr15 22727475 22727616 -62968138 - HERV16 LTR ERVL -4507 489 351 2140 128 112 11 chr15 22727616 22727992 -62967762 - MSTA LTR MaLR 0 428 15 1231 102 0 11 chr15 22728003 22728179 -62967575 - AluSq SINE Alu -139 174 1 289 353 101 19 chr15 22728179 22728433 -62967321 + L2 LINE L2 2776 3051 -221 2239 153 79 9 chr15 22728563 22728994 -62966760 - LOR1b LTR ERV1 0 461 1 740 276 130 21 chr15 22729161 22729491 -62966263 - MLT1J LTR MaLR -145 366 1 722 171 0 0 chr15 22729958 22730069 -62965685 - FLAM_C SINE Alu -32 111 1 4983 126 26 97 chr15 22730537 22730683 -62965071 + L1M4c LINE L1 878 1033 -5351 366 236 209 0 chr15 22730683 22730793 -62964961 + FLAM_A SINE Alu 1 133 0 4983 126 26 97 chr15 22730793 22730918 -62964836 + L1M4c LINE L1 1033 1165 -5219 1712 141 31 10 chr15 22730918 22731208 -62964546 + AluSx SINE Alu 1 296 -16 4983 126 26 97 chr15 22731208 22732070 -62963684 + L1M4c LINE L1 1165 1932 -4452 772 100 7 100 chr15 22732070 22732125 -62963629 + MSTB1 LTR MaLR 1 60 -372 1848 153 3 0 chr15 22732125 22732413 -62963341 + AluSx SINE Alu 3 291 -21 772 100 7 100 chr15 22732413 22732497 -62963257 + MSTB1 LTR MaLR 60 127 -305 11312 61 14 1 chr15 22732548 22732926 -62962828 - L1PA6 LINE L1 0 6154 5783 2044 85 4 0 chr15 22732926 22733196 -62962558 - AluY SINE Alu -6 305 35 11312 61 14 1 chr15 22733196 22735061 -62960693 - L1PA6 LINE L1 -371 5783 3903 2095 99 20 3 chr15 22735112 22735415 -62960339 - AluSp SINE Alu -5 308 1 432 332 78 0 chr15 22735722 22735939 -62959815 - LTR16B LTR ERVL 0 464 231 683 212 133 0 chr15 22735976 22736127 -62959627 + MER45A DNA AcHobo 1 171 -7 690 253 40 6 chr15 22736138 22736312 -62959442 - LTR16B LTR ERVL -284 180 1 1627 305 26 67 chr15 22736330 22737409 -62958345 - ERVL LTR ERVL -17 5383 4428 969 321 13 13 chr15 22737414 22737732 -62958022 + HERV16 LTR ERVL 2607 2924 -2072 197 266 0 96 chr15 22737732 22737826 -62957928 - L3 LINE CR1 -1367 210 126 461 245 19 0 chr15 22737828 22737934 -62957820 + HERV16 LTR ERVL 3060 3167 -2597 1340 263 47 32 chr15 22737983 22738147 -62957607 - HERV16 LTR ERVL -2896 2100 1940 2215 80 10 10 chr15 22738147 22738446 -62957308 - AluSx SINE Alu -13 299 1 1340 263 47 32 chr15 22738446 22738688 -62957066 - HERV16 LTR ERVL -3056 1940 1688 336 284 7 92 chr15 22738722 22738863 -62956891 + MER58A DNA MER1_type 1 129 0 2078 115 0 29 chr15 22739751 22740064 -62955690 + AluSx SINE Alu 2 305 -7 223 278 56 28 chr15 22741689 22741761 -62953993 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 22741777 22742067 -62953687 - AluSx SINE Alu -22 290 1 1730 170 26 7 chr15 22742235 22742541 -62953213 + AluJo SINE Alu 1 312 0 757 237 7 75 chr15 22742597 22742876 -62952878 - L2 LINE L2 0 3313 3054 275 336 56 0 chr15 22742886 22742993 -62952761 - L3 LINE CR1 -127 1450 1338 984 307 113 38 chr15 22743000 22743557 -62952197 - L3 LINE CR1 -165 1412 814 34 0 0 0 chr15 22743575 22743609 -62952145 + AT_rich Low_complexity Low_complexity 1 34 0 325 336 229 29 chr15 22744094 22744336 -62951418 - L3 LINE CR1 -762 815 623 2276 97 0 0 chr15 22744336 22744635 -62951119 - AluSx SINE Alu -13 299 1 325 336 229 29 chr15 22744635 22744737 -62951017 - L3 LINE CR1 -954 623 402 1200 269 113 26 chr15 22744765 22745200 -62950554 + L2 LINE L2 2798 3268 -4 749 176 13 39 chr15 22745200 22745353 -62950401 + MIR SINE MIR 114 262 0 216 203 51 51 chr15 22745380 22745439 -62950315 - L2 LINE L2 -17 3296 3238 309 109 0 0 chr15 22745474 22745520 -62950234 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1374 146 4 0 chr15 22745622 22745848 -62949906 + AluSg/x SINE Alu 82 308 -2 306 243 103 9 chr15 22745848 22745955 -62949799 + MER20B DNA MER1_type 406 522 -261 1898 134 0 16 chr15 22746018 22746323 -62949431 + AluSx SINE Alu 1 300 -12 268 188 0 0 chr15 22746466 22746514 -62949240 + MER20B DNA MER1_type 735 782 -1 1546 175 3 18 chr15 22747477 22747763 -62947991 - AluJb SINE Alu -30 282 1 1462 136 65 39 chr15 22747974 22748253 -62947501 + AluJo SINE Alu 1 286 -26 2051 125 3 0 chr15 22749793 22750090 -62945664 + AluSx SINE Alu 1 298 -14 428 269 67 8 chr15 22750752 22750886 -62944868 - L1MC4 LINE L1 0 8042 7901 250 176 29 0 chr15 22750886 22750940 -62944814 + (TATG)n Simple_repeat Simple_repeat 2 60 -11 2084 116 0 22 chr15 22750940 22751260 -62944494 - AluSq SINE Alu 0 313 1 250 176 29 0 chr15 22751260 22751273 -62944481 + (TATG)n Simple_repeat Simple_repeat 60 71 0 731 269 31 22 chr15 22751274 22751640 -62944114 - L1MD3 LINE L1 -204 7791 7342 189 0 0 0 chr15 22751640 22751661 -62944093 + (TC)n Simple_repeat Simple_repeat 2 22 0 731 269 31 22 chr15 22751661 22751733 -62944021 - L1MD3 LINE L1 -653 7342 7272 235 317 29 0 chr15 22751999 22752103 -62943651 - L1MD3 LINE L1 -2013 5795 5689 424 28 19 271 chr15 22752113 22752220 -62943534 - MADE1 DNA Mariner 0 80 1 1594 180 13 36 chr15 22752887 22753193 -62942561 - AluJo SINE Alu -13 299 1 25 0 0 0 chr15 22753195 22753220 -62942534 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr15 22753220 22753501 -62942253 - AluSx SINE Alu -31 281 1 261 264 19 0 chr15 22753594 22753647 -62942107 + MER58 DNA MER1_type 7 60 -281 * 350 143 286 10 chr15 22753646 22753744 -62942010 + MER58 DNA MER1_type 2296 2420 0 1752 133 35 3 chr15 22753863 22754149 -62941605 - AluSg SINE Alu -15 295 1 1800 133 54 0 chr15 22754179 22754457 -62941297 - AluSx SINE Alu -15 297 5 244 268 91 50 chr15 22754483 22754681 -62941073 + L1MC5 LINE L1 7615 7820 -141 228 86 0 0 chr15 22754781 22754816 -62940938 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 278 256 0 0 chr15 22754839 22754925 -62940829 + (TA)n Simple_repeat Simple_repeat 2 87 0 2343 86 3 3 chr15 22755549 22755862 -62939892 - AluSp SINE Alu 0 313 1 2122 113 0 7 chr15 22756467 22756769 -62938985 - AluSx SINE Alu -12 300 1 273 279 49 0 chr15 22756805 22756866 -62938888 + MIR SINE MIR 11 74 -188 383 204 150 84 chr15 22756928 22757095 -62938659 + MIR SINE MIR 72 249 -13 1838 120 57 7 chr15 22757132 22757415 -62938339 - AluSg SINE Alu -13 297 1 1174 157 27 49 chr15 22757494 22757717 -62938037 + MER20 DNA MER1_type 1 218 -1 190 253 36 48 chr15 22757808 22757891 -62937863 - MIR3 SINE MIR -113 95 14 1623 258 46 2 chr15 22758534 22758968 -62936786 + LTR16B LTR ERVL 5 457 -7 2444 55 0 0 chr15 22759254 22759546 -62936208 - AluY SINE Alu -15 296 5 471 257 0 18 chr15 22759662 22759771 -62935983 - L2 LINE L2 0 3313 3207 651 215 23 0 chr15 22759955 22760085 -62935669 - MER94 DNA DNA 0 134 2 2033 131 0 10 chr15 22761158 22761470 -62934284 - AluSx SINE Alu -3 309 1 1639 123 70 42 chr15 22761891 22762176 -62933578 - AluSx SINE Alu -19 293 1 379 269 129 26 chr15 22762866 22763059 -62932695 + MIR SINE MIR 21 233 -29 365 336 25 0 chr15 22763288 22763407 -62932347 + MIR SINE MIR 2 123 -139 972 189 0 0 chr15 22763407 22763576 -62932178 - AluSg/x SINE Alu -10 302 134 543 92 0 0 chr15 22763585 22763672 -62932082 + (CCTG)n Simple_repeat Simple_repeat 2 88 0 1445 145 40 0 chr15 22763672 22763910 -62931844 - AluSq SINE Alu -7 306 56 546 211 8 17 chr15 22763910 22764152 -62931602 + CT-rich Low_complexity Low_complexity 1 239 0 212 163 0 20 chr15 22764177 22764226 -62931528 + CT-rich Low_complexity Low_complexity 1 48 0 357 281 0 11 chr15 22764233 22764245 -62931509 + MIR SINE MIR 109 120 -142 1477 188 31 3 chr15 22764245 22764533 -62931221 - AluJo SINE Alu 0 312 17 357 281 0 11 chr15 22764533 22764609 -62931145 + MIR SINE MIR 120 196 -66 1816 102 6 80 chr15 22764885 22765199 -62930555 + AluSx SINE Alu 1 291 -21 888 251 21 0 chr15 22765520 22765711 -62930043 - MLT1K LTR MaLR -3 585 391 1952 122 14 3 chr15 22765713 22766008 -62929746 - AluSx SINE Alu -14 298 1 473 193 9 37 chr15 22766198 22766307 -62929447 + L2 LINE L2 3207 3312 -1 248 266 62 62 chr15 22766425 22766538 -62929216 - L2 LINE L2 -258 3014 2902 855 226 33 24 chr15 22766622 22766834 -62928920 + LTR33 LTR ERVL 19 232 -289 674 174 38 136 chr15 22766835 22766876 -62928878 + MER5C DNA MER1_type 62 105 -219 2059 138 0 3 chr15 22766876 22767188 -62928566 + AluSx SINE Alu 1 311 -1 674 174 38 136 chr15 22767188 22767252 -62928502 + MER5C DNA MER1_type 105 174 -150 1983 140 46 17 chr15 22767252 22767601 -62928153 + MER46B DNA MER2_type 3 236 0 674 174 38 136 chr15 22767601 22767781 -62927973 + MER5C DNA MER1_type 174 320 -4 1155 204 23 9 chr15 22768285 22768505 -62927249 + MER58A DNA MER1_type 2 224 0 1600 217 21 24 chr15 22769905 22770278 -62925476 + MLT1A2 LTR MaLR 1 372 -2 22 0 0 0 chr15 22770585 22770607 -62925147 + AT_rich Low_complexity Low_complexity 1 22 0 404 325 84 10 chr15 22770647 22770971 -62924783 - MLT1K LTR MaLR -114 474 81 200 262 229 16 chr15 22771046 22771168 -62924586 - L2 LINE L2 0 3272 3125 342 241 0 64 chr15 22771984 22772171 -62923583 + C-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr15 22772183 22772205 -62923549 + GC_rich Low_complexity Low_complexity 1 22 0 481 302 109 5 chr15 22772691 22772883 -62922871 - MIR SINE MIR -2 260 49 269 290 19 9 chr15 22772985 22773092 -62922662 + CT-rich Low_complexity Low_complexity 1 108 0 1877 115 3 48 chr15 22773512 22773682 -62922072 - AluSx SINE Alu -12 300 149 1767 113 55 52 chr15 22773682 22773991 -62921763 - AluSg SINE Alu 0 310 1 1877 115 3 48 chr15 22773991 22774134 -62921620 - AluSx SINE Alu -163 149 1 192 308 96 19 chr15 22774374 22774478 -62921276 - MER5B DNA MER1_type -3 175 64 1511 324 73 23 chr15 22774628 22775018 -62920736 + ERVL LTR ERVL 3722 4091 -1673 4488 98 31 0 chr15 22775018 22775632 -62920122 - MER41B LTR ERV1 0 635 3 1511 324 73 23 chr15 22775632 22776120 -62919634 + ERVL LTR ERVL 4091 4644 -1120 197 303 15 15 chr15 22776296 22776362 -62919392 + MER5B DNA MER1_type 113 178 0 236 185 62 74 chr15 22776554 22776635 -62919119 + MIR SINE MIR 183 262 0 410 224 24 48 chr15 22776795 22776920 -62918834 - L1MC4 LINE L1 0 8042 7921 2147 82 7 3 chr15 22776928 22777221 -62918533 - AluSq SINE Alu -19 294 1 323 289 22 11 chr15 22777267 22777357 -62918397 - L1MC4 LINE L1 -1336 6706 6616 945 263 43 40 chr15 22777470 22777820 -62917934 - L1MC4 LINE L1 -225 7817 7467 266 287 98 18 chr15 22778189 22778327 -62917427 - MIR SINE MIR -93 169 20 2419 80 3 0 chr15 22778465 22778776 -62916978 - AluSp SINE Alu -1 312 1 538 241 32 45 chr15 22778875 22779091 -62916663 - MLT1B LTR MaLR -165 263 1 2156 226 91 24 chr15 22779116 22779734 -62916020 - L1MC4 LINE L1 -524 7518 6860 387 191 21 0 chr15 22779734 22779828 -62915926 - L1MC4 LINE L1 -950 7092 6997 577 149 14 28 chr15 22780089 22780230 -62915524 + CT-rich Low_complexity Low_complexity 4 142 0 283 327 9 19 chr15 22780381 22780488 -62915266 + G-rich Low_complexity Low_complexity 2 107 0 349 279 22 45 chr15 22780578 22780757 -62914997 + GA-rich Low_complexity Low_complexity 1 175 0 1093 63 0 53 chr15 22780971 22781028 -62914726 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 1093 63 0 53 chr15 22781028 22781218 -62914536 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 643 267 91 24 chr15 22781278 22781488 -62914266 - L2 LINE L2 -17 3296 3073 185 75 75 0 chr15 22781797 22781850 -62913904 + (TA)n Simple_repeat Simple_repeat 2 58 0 519 143 0 38 chr15 22782195 22782300 -62913454 - L1PA11 LINE L1 -3 6171 6071 229 143 41 20 chr15 22783788 22783837 -62911917 - MSTC LTR MaLR 0 428 379 474 306 47 30 chr15 22784351 22784511 -62911243 + MLT1J2 LTR MaLR 1 168 -282 1600 144 125 44 chr15 22784511 22784872 -62910882 + MLT1B LTR MaLR 1 390 0 474 306 47 30 chr15 22784872 22784946 -62910808 + MLT1J2 LTR MaLR 168 239 -211 501 288 49 6 chr15 22785812 22785975 -62909779 - MER117 DNA MER1_type -26 171 2 405 119 0 0 chr15 22786257 22786324 -62909430 - Alu SINE Alu -12 300 234 297 0 0 0 chr15 22786330 22786356 -62909398 + (TA)n Simple_repeat Simple_repeat 1 59 0 297 0 0 0 chr15 22786356 22786389 -62909365 + (TA)n Simple_repeat Simple_repeat 1 33 0 1955 153 3 3 chr15 22786472 22786780 -62908974 + AluJb SINE Alu 1 308 -4 2000 133 0 3 chr15 22786910 22787204 -62908550 - AluSx SINE Alu -19 293 1 343 293 202 43 chr15 22787757 22788273 -62907481 + L1MEd LINE L1 816 1287 -1203 242 182 0 0 chr15 22788967 22789011 -62906743 - L2 LINE L2 -1904 1410 1367 2075 113 10 3 chr15 22790266 22790575 -62905179 + AluSp SINE Alu 1 311 -2 1464 214 104 24 chr15 22790623 22791044 -62904710 + MSTB2 LTR MaLR 3 457 0 180 263 0 0 chr15 22791789 22791827 -62903927 - MIR SINE MIR -149 113 76 1763 219 87 57 chr15 22792233 22792732 -62903022 + MLT1E LTR MaLR 2 522 -71 2336 86 3 0 chr15 22792732 22793036 -62902718 - AluSc SINE Alu -4 305 1 1763 219 87 57 chr15 22793036 22793111 -62902643 + MLT1E LTR MaLR 522 593 0 410 295 141 7 chr15 22793873 22794022 -62901732 + MIR SINE MIR 11 179 -83 324 329 37 19 chr15 22794122 22794283 -62901471 - L2 LINE L2 -558 2756 2593 3159 193 63 19 chr15 22794315 22795041 -62900713 - L1MC4 LINE L1 -8 8034 7277 239 213 295 0 chr15 22795249 22795310 -62900444 - MIR3 SINE MIR -49 159 81 2087 181 16 5 chr15 22795428 22795815 -62899939 + L1MC1 LINE L1 5834 6224 -109 768 120 98 15 chr15 22795857 22795990 -62899764 + L1MC1 LINE L1 6190 6333 0 1288 100 4 1 chr15 22796001 22796263 -62899491 + AluSx SINE Alu 2 300 0 249 275 0 14 chr15 22797272 22797341 -62898413 + GA-rich Low_complexity Low_complexity 3 70 0 2813 135 34 46 chr15 22797591 22798087 -62897667 - LTR42 LTR ERVL 0 495 6 631 221 13 57 chr15 22798292 22798450 -62897304 + MER5B DNA MER1_type 4 154 -24 4721 185 62 33 chr15 22799151 22799675 -62896079 - MER45B DNA AcHobo -551 1030 523 1553 93 19 0 chr15 22799675 22799889 -62895865 - AluSg/x SINE Alu -18 292 75 4721 185 62 33 chr15 22799889 22800365 -62895389 - MER45B DNA AcHobo -1058 523 1 21 36 0 0 chr15 22800425 22800453 -62895301 + AT_rich Low_complexity Low_complexity 1 28 0 190 369 27 40 chr15 22801527 22801676 -62894078 + MER5B DNA MER1_type 20 166 -12 645 296 20 20 chr15 22803159 22803358 -62892396 + MIR SINE MIR 14 212 -50 445 188 23 128 chr15 22803873 22803962 -62891792 - Charlie8 DNA MER1_type -122 208 136 2017 127 7 0 chr15 22803962 22804253 -62891501 - AluSx SINE Alu -19 293 1 445 188 23 128 chr15 22804253 22804296 -62891458 - Charlie8 DNA MER1_type -194 136 90 1059 243 78 10 chr15 22804905 22805214 -62890540 - MER46C DNA MER2_type -1 337 8 399 230 0 0 chr15 22805755 22805868 -62889886 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 754 204 104 23 chr15 22808392 22808612 -62887142 - MLT1C LTR MaLR -224 243 6 234 91 0 0 chr15 22809405 22809438 -62886316 + (CA)n Simple_repeat Simple_repeat 2 34 0 1929 145 34 90 chr15 22809528 22809627 -62886127 + MLT1B LTR MaLR 1 104 -286 5190 80 11 3 chr15 22809627 22810275 -62885479 + L1PA11 LINE L1 5522 6174 0 1929 145 34 90 chr15 22810275 22810588 -62885166 + MLT1B LTR MaLR 104 390 0 275 183 9 0 chr15 22810611 22810671 -62885083 + MIR SINE MIR 93 146 -62 23 0 0 0 chr15 22810706 22810729 -62885025 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 22810736 22810760 -62884994 + AT_rich Low_complexity Low_complexity 1 24 0 857 173 19 12 chr15 22811358 22811520 -62884234 + MER20 DNA MER1_type 57 219 0 2232 179 31 20 chr15 22812706 22812877 -62882877 + MSTD LTR MaLR 1 169 -227 2523 75 0 0 chr15 22812877 22813183 -62882571 - AluY SINE Alu -4 307 2 2232 179 31 20 chr15 22813183 22813403 -62882351 + MSTD LTR MaLR 169 396 0 250 266 287 56 chr15 22813731 22814017 -62881737 - L2 LINE L2 -1 3271 2920 194 225 0 0 chr15 22814105 22814145 -62881609 + MIR SINE MIR 34 73 -135 290 294 147 0 chr15 22814399 22814508 -62881246 + L2 LINE L2 3189 3313 0 567 191 147 45 chr15 22815493 22815650 -62880104 + MIR SINE MIR 1 173 -89 723 251 208 55 chr15 22815652 22816123 -62879631 - MLT1H LTR MaLR -2 547 5 2402 166 85 15 chr15 22816758 22817453 -62878301 - L1MA9 LINE L1 -524 5788 5043 2708 139 43 47 chr15 22817457 22817907 -62877847 + L1MA9 LINE L1 5777 6226 -86 2299 80 3 3 chr15 22817907 22818194 -62877560 + AluSp SINE Alu 1 287 -26 2708 139 43 47 chr15 22818194 22818281 -62877473 + L1MA9 LINE L1 6226 6312 0 624 306 29 8 chr15 22818293 22818535 -62877219 - L1ME4a LINE L1 -259 5862 5616 2237 247 62 64 chr15 22818744 22819811 -62875943 - L1ME3A LINE L1 -37 6133 5076 654 168 106 55 chr15 22819816 22820131 -62875623 - MLT1A1 LTR MaLR 0 365 4 526 317 15 19 chr15 22820145 22820416 -62875338 - L1ME3A LINE L1 -1089 5057 4788 823 210 54 0 chr15 22820511 22820678 -62875076 - L1M4 LINE L1 -503 5671 5496 33557 69 8 11 chr15 22820691 22824898 -62870856 - L1PA6 LINE L1 -11 6143 1956 2456 74 0 0 chr15 22824898 22825195 -62870559 - AluY SINE Alu -14 297 1 33557 69 8 11 chr15 22825195 22826263 -62869491 - L1PA6 LINE L1 -4198 1956 887 567 211 61 0 chr15 22826330 22826444 -62869310 - MLT1A1 LTR MaLR -77 288 168 1988 162 47 11 chr15 22826468 22827012 -62868742 - L1M4 LINE L1 -699 5475 4908 214 309 127 64 chr15 22827393 22827535 -62868219 - MER5A DNA MER1_type -28 161 1 196 333 76 0 chr15 22829677 22829743 -62866011 + L2 LINE L2 3221 3291 -22 248 298 125 0 chr15 22831035 22831139 -62864615 - L2 LINE L2 -9 3304 3188 420 269 176 0 chr15 22831812 22831994 -62863760 - L1ME4a LINE L1 -38 6083 5870 650 13 13 0 chr15 22832118 22832197 -62863557 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 225 0 0 0 chr15 22832574 22832599 -62863155 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 207 111 7 chr15 22832601 22832736 -62863018 - LTR16A LTR ERVL -1 449 301 735 325 57 19 chr15 22833042 22833554 -62862200 - HERV16 LTR ERVL -75 5344 4788 345 260 12 83 chr15 22833735 22833904 -62861850 - HERV16 LTR ERVL -606 4390 4234 368 350 18 0 chr15 22833944 22834107 -62861647 + ERVL LTR ERVL 3375 3540 -2224 279 315 36 0 chr15 22834095 22834206 -62861548 - HERV16 LTR ERVL -2300 3354 3240 * 692 315 20 8 chr15 22834288 22834539 -62861215 - HERV16 LTR ERVL -2385 3269 3016 827 211 117 0 chr15 22834566 22834746 -62861008 + MER3 DNA MER1_type 9 209 0 1077 317 95 6 chr15 22834751 22835288 -62860466 - HERV16 LTR ERVL -2482 3003 2419 946 216 22 11 chr15 22835319 22835500 -62860254 + MER58A DNA MER1_type 42 224 0 2487 87 3 18 chr15 22835523 22835855 -62859899 + L1PA3 LINE L1 5829 6155 0 1808 151 3 55 chr15 22835917 22836228 -62859526 + AluJo SINE Alu 1 295 -17 3719 276 77 43 chr15 22836288 22837954 -62857800 - HERV16 LTR ERVL -2847 2149 353 2340 88 13 0 chr15 22837954 22838259 -62857495 - AluY SINE Alu -2 309 1 3719 276 77 43 chr15 22838259 22838408 -62857346 - HERV16 LTR ERVL -4643 353 210 726 237 133 0 chr15 22838944 22839155 -62856599 - MIR SINE MIR -21 241 3 1996 170 0 0 chr15 22839314 22839626 -62856128 + AluSx SINE Alu 1 312 0 276 272 174 11 chr15 22840666 22840758 -62854996 + L2 LINE L2 3157 3263 -9 249 309 45 0 chr15 22840981 22841091 -62854663 - L1ME4a LINE L1 -201 5920 5806 669 223 5 82 chr15 22841121 22841341 -62854413 + LTR33 LTR ERVL 13 215 -306 374 240 10 10 chr15 22841591 22841695 -62854059 - L1ME4a LINE L1 -401 5720 5617 2826 103 78 5 chr15 22841947 22842344 -62853410 - MSTA LTR MaLR -2 426 1 772 205 53 0 chr15 22842603 22842793 -62852961 - L1ME LINE L1 -3714 2366 2167 565 119 158 0 chr15 22842789 22842890 -62852864 - L1MA9 LINE L1 -170 6142 6026 * 901 166 53 81 chr15 22842827 22843074 -62852680 + L1MA9 LINE L1 6073 6312 0 1513 279 42 63 chr15 22843577 22843964 -62851790 - L1ME LINE L1 -5402 668 299 2915 9 0 6 chr15 22843964 22844284 -62851470 - AluYb8 SINE Alu 0 318 1 1513 279 42 63 chr15 22844284 22844567 -62851187 - L1ME LINE L1 -5771 299 12 358 323 0 0 chr15 22844690 22844789 -62850965 - MIR3 SINE MIR -16 192 94 693 255 21 80 chr15 22846969 22847384 -62848370 + MLT1H LTR MaLR 50 409 0 409 260 16 8 chr15 22847665 22847788 -62847966 + LTR67 LTR ERVL 434 557 0 450 252 200 14 chr15 22847906 22848116 -62847638 + MIR SINE MIR 4 252 -10 250 67 44 0 chr15 22848134 22848179 -62847575 + (ATG)n Simple_repeat Simple_repeat 3 49 0 183 186 23 47 chr15 22848216 22848259 -62847495 - MIR SINE MIR -163 99 58 283 250 71 62 chr15 22849617 22849729 -62846025 + MIR SINE MIR 94 206 -56 881 169 44 16 chr15 22850775 22850958 -62844796 + MER5A DNA MER1_type 2 189 0 781 296 21 4 chr15 22850958 22851198 -62844556 + LTR16C LTR ERVL 248 491 0 273 326 67 4 chr15 22851243 22851371 -62844383 - MIR SINE MIR -43 165 28 488 325 39 7 chr15 22851412 22851566 -62844188 + MIR SINE MIR 11 169 -93 236 274 14 14 chr15 22851634 22851707 -62844047 - MIR SINE MIR -71 191 119 209 385 22 0 chr15 22851997 22852088 -62843666 - MIR3 SINE MIR -24 184 92 1111 231 172 42 chr15 22852680 22853215 -62842539 - LTR48B LTR ERV1 0 644 5 2060 97 52 3 chr15 22853573 22853862 -62841892 - AluSq SINE Alu -10 303 1 267 283 9 9 chr15 22854679 22854785 -62840969 + GA-rich Low_complexity Low_complexity 1 106 0 189 0 0 0 chr15 22855193 22855214 -62840540 + (T)n Simple_repeat Simple_repeat 1 21 0 2681 39 0 0 chr15 22855269 22855575 -62840179 + AluY SINE Alu 1 306 -5 482 284 38 43 chr15 22855796 22856007 -62839747 - LTR67 LTR ERVL -7 550 341 527 242 56 6 chr15 22856347 22856508 -62839246 - L2 LINE L2 -519 2795 2627 257 209 81 12 chr15 22856564 22856650 -62839104 + L1MC4 LINE L1 6612 6703 -1339 819 153 0 0 chr15 22856679 22856797 -62838957 - FLAM_C SINE Alu -15 118 1 51 65 0 0 chr15 22858083 22858176 -62837578 + AT_rich Low_complexity Low_complexity 1 93 0 21 57 0 0 chr15 22858309 22858344 -62837410 + AT_rich Low_complexity Low_complexity 1 35 0 881 268 112 49 chr15 22858657 22859162 -62836592 + L2 LINE L2 2548 3084 -229 1102 219 54 0 chr15 22859252 22859494 -62836260 - MIR SINE MIR 0 262 8 224 282 106 0 chr15 22859476 22859561 -62836193 + L2 LINE L2 3136 3229 -43 * 423 0 0 0 chr15 22860106 22860153 -62835601 + (TC)n Simple_repeat Simple_repeat 2 48 0 743 308 101 60 chr15 22860304 22861152 -62834602 - L2 LINE L2 -3 3269 2363 234 0 0 0 chr15 22861152 22861178 -62834576 + (TG)n Simple_repeat Simple_repeat 1 26 0 743 308 101 60 chr15 22861178 22861240 -62834514 - L2 LINE L2 -909 2363 2305 206 79 0 53 chr15 22861878 22861916 -62833838 + (TTCCC)n Simple_repeat Simple_repeat 5 40 0 25 65 0 0 chr15 22864134 22864180 -62831574 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 22864681 22864741 -62831013 + CT-rich Low_complexity Low_complexity 2 64 0 323 195 260 16 chr15 22864799 22864922 -62830832 - LTR33 LTR ERVL -7 514 362 948 243 171 47 chr15 22864955 22865287 -62830467 + LTR33 LTR ERVL 67 459 -62 1587 168 56 3 chr15 22865287 22865421 -62830333 + AluJo SINE Alu 1 127 -185 1931 129 33 0 chr15 22865421 22865723 -62830031 + AluSx SINE Alu 1 312 0 1587 168 56 3 chr15 22865723 22865874 -62829880 + AluJo SINE Alu 127 301 -11 948 243 171 47 chr15 22865874 22865945 -62829809 + LTR33 LTR ERVL 459 520 -1 557 281 128 84 chr15 22865945 22866251 -62829503 - L1MEd LINE L1 -4903 1216 925 2196 132 0 0 chr15 22866251 22866555 -62829199 - AluSx SINE Alu -8 304 1 557 281 128 84 chr15 22866555 22867351 -62828403 - L1MEd LINE L1 -5194 925 66 470 329 12 0 chr15 22867502 22867666 -62828088 + MIR SINE MIR 4 169 -93 946 240 58 16 chr15 22867667 22867925 -62827829 - MLT1C LTR MaLR -8 459 191 444 213 75 0 chr15 22867935 22868029 -62827725 + LTR33-int LTR ERVL 333 433 -3123 1097 247 87 74 chr15 22868046 22868372 -62827382 - L1MC4a LINE L1 -1340 6468 6148 2350 103 0 6 chr15 22868372 22868684 -62827070 - AluSx SINE Alu -2 310 1 1097 247 87 74 chr15 22868684 22868873 -62826881 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 22868873 22868923 -62826831 + (TA)n Simple_repeat Simple_repeat 2 51 0 1097 247 87 74 chr15 22868923 22868948 -62826806 - L1MC4a LINE L1 -1865 5943 5920 379 221 12 0 chr15 22869154 22869240 -62826514 - MER5A DNA MER1_type -87 102 16 2437 48 52 0 chr15 22871174 22871464 -62824290 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 22871464 22871485 -62824269 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 22872565 22872586 -62823168 + AT_rich Low_complexity Low_complexity 1 21 0 459 289 46 55 chr15 22872924 22873142 -62822612 + LTR16C LTR ERVL 187 402 -89 220 342 84 61 chr15 22873357 22873620 -62822134 - L2 LINE L2 -8 3264 2996 665 328 81 36 chr15 22874717 22875189 -62820565 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 22875386 22875469 -62820285 + AT_rich Low_complexity Low_complexity 1 83 0 2234 156 6 6 chr15 22875609 22875974 -62819780 - MLT1A1 LTR MaLR 0 365 1 641 264 62 10 chr15 22876017 22876225 -62819529 - MIR SINE MIR -38 224 6 198 297 16 0 chr15 22876608 22876672 -62819082 - L2 LINE L2 -5 3308 3244 369 323 31 24 chr15 22876969 22877096 -62818658 + MIR3 SINE MIR 3 130 -78 401 265 10 0 chr15 22877291 22877393 -62818361 + MER5A DNA MER1_type 4 106 -83 354 67 0 0 chr15 22878194 22878239 -62817515 + MSTC LTR MaLR 2 46 -382 18699 156 43 12 chr15 22878239 22879905 -62815849 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 22879905 22879932 -62815822 + (GA)n Simple_repeat Simple_repeat 2 28 0 18699 156 43 12 chr15 22879932 22880233 -62815521 + L1M1 LINE L1 1630 1920 -5645 2602 98 56 0 chr15 22880233 22880590 -62815164 - MER51B LTR ERV1 0 377 1 18699 156 43 12 chr15 22880590 22881808 -62813946 + L1M1 LINE L1 1920 3301 -4264 6461 95 8 12 chr15 22881824 22882200 -62813554 - L1PB1 LINE L1 0 6151 5775 2359 74 0 43 chr15 22882200 22882525 -62813229 - AluY SINE Alu 0 311 1 6461 95 8 12 chr15 22882525 22883157 -62812597 - L1PB1 LINE L1 -376 5775 5149 3042 113 2 2 chr15 22883164 22883573 -62812181 + LTR3 LTR ERVK 23 431 -1 12603 217 26 15 chr15 22883580 22886654 -62809100 - L1 LINE L1 -866 5280 2172 6269 66 0 4 chr15 22886635 22887423 -62808331 - L1PA6 LINE L1 0 6870 6086 * 10212 88 46 16 chr15 22887417 22887561 -62808193 - L1PA6 LINE L1 -3929 2934 2796 2356 106 0 6 chr15 22887561 22887872 -62807882 - AluSg SINE Alu 0 310 2 10212 88 46 16 chr15 22887872 22888997 -62806757 - L1PA6 LINE L1 -4067 2796 1607 2297 108 0 13 chr15 22888997 22889312 -62806442 - AluSx SINE Alu -1 311 1 10212 88 46 16 chr15 22889312 22889612 -62806142 - L1PA6 LINE L1 -5256 1607 1317 3434 134 6 17 chr15 22889627 22890157 -62805597 - L1PA6 LINE L1 -5706 1157 634 1148 162 5 0 chr15 22890157 22890355 -62805399 - L1PA6 LINE L1 -6663 200 2 4097 178 12 29 chr15 22890359 22890873 -62804881 + L1M1 LINE L1 3287 3808 -3757 2247 106 66 26 chr15 22890873 22891223 -62804531 - THE1B LTR MaLR 0 364 1 11580 97 25 0 chr15 22891223 22892765 -62802989 - THE1B-int LTR MaLR 0 1580 1 2159 108 61 55 chr15 22892765 22892805 -62802949 - THE1B LTR MaLR 0 364 326 2258 104 3 23 chr15 22892805 22893114 -62802640 + AluY SINE Alu 1 303 -8 2159 108 61 55 chr15 22893114 22893435 -62802319 - THE1B LTR MaLR -38 326 1 4097 178 12 29 chr15 22893435 22894117 -62801637 + L1M1 LINE L1 3805 4461 -3104 1191 199 121 49 chr15 22894120 22894427 -62801327 + MLT1A1 LTR MaLR 37 365 0 235 356 85 13 chr15 22894485 22894802 -62800952 - L2 LINE L2 -941 2373 2034 216 188 0 21 chr15 22895005 22895053 -62800701 - L2 LINE L2 -5 3308 3262 1682 176 0 7 chr15 22896356 22896645 -62799109 - AluSx SINE Alu -3 309 23 308 360 0 17 chr15 22896796 22896971 -62798783 + CT-rich Low_complexity Low_complexity 5 176 0 2477 55 0 7 chr15 22897229 22897519 -62798235 + AluY SINE Alu 1 288 -23 5916 116 103 16 chr15 22897560 22898573 -62797181 - MER52C LTR ERV1 -175 1103 3 642 277 135 30 chr15 22899297 22899734 -62796020 - MER90 LTR ERV1 -14 561 78 191 216 0 0 chr15 22899751 22899788 -62795966 + MIR3 SINE MIR 123 159 -49 3133 141 28 20 chr15 22899951 22900489 -62795265 - L1PA16 LINE L1 -1 6165 5624 2034 136 46 15 chr15 22900493 22900817 -62794937 - MSTB LTR MaLR -92 334 1 1077 152 94 0 chr15 22900818 22901009 -62794745 - L1PA16 LINE L1 -524 5642 5434 1536 233 12 0 chr15 22902192 22902522 -62793232 + MER58B DNA MER1_type 8 341 0 1898 110 61 0 chr15 22902576 22902840 -62792914 + AluSx SINE Alu 14 293 -19 560 301 88 89 chr15 22953944 22954482 -62741272 - L2 LINE L2 -371 2943 2406 234 0 0 0 chr15 22954482 22954508 -62741246 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 301 88 89 chr15 22954508 22955210 -62740544 - L2 LINE L2 -908 2406 1705 206 79 0 53 chr15 22955210 22955248 -62740506 + (TCCCC)n Simple_repeat Simple_repeat 3 38 0 25 65 0 0 chr15 22957463 22957509 -62738245 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 22958010 22958070 -62737684 + CT-rich Low_complexity Low_complexity 2 64 0 323 211 260 16 chr15 22958128 22958251 -62737503 - LTR33 LTR ERVL -7 514 362 935 243 171 47 chr15 22958284 22958616 -62737138 + LTR33 LTR ERVL 67 459 -62 1577 168 56 3 chr15 22958616 22958750 -62737004 + AluJo SINE Alu 1 127 -185 1921 129 33 0 chr15 22958750 22959052 -62736702 + AluSx SINE Alu 1 312 0 1577 168 56 3 chr15 22959052 22959203 -62736551 + AluJo SINE Alu 127 301 -11 935 243 171 47 chr15 22959203 22959274 -62736480 + LTR33 LTR ERVL 459 520 -1 657 284 129 86 chr15 22959274 22959580 -62736174 - L1MEd LINE L1 -4903 1216 924 2175 132 0 0 chr15 22959580 22959884 -62735870 - AluSx SINE Alu -8 304 1 657 284 129 86 chr15 22959884 22960681 -62735073 - L1MEd LINE L1 -5195 924 66 516 329 12 0 chr15 22960832 22960996 -62734758 + MIR SINE MIR 4 169 -93 947 240 58 16 chr15 22960997 22961255 -62734499 - MLT1C LTR MaLR -8 459 191 441 213 75 0 chr15 22961265 22961359 -62734395 + LTR33-int LTR ERVL 333 433 -3123 1136 247 87 74 chr15 22961376 22961702 -62734052 - L1MC4a LINE L1 -1340 6468 6148 2328 103 0 6 chr15 22961702 22962014 -62733740 - AluSx SINE Alu -2 310 1 1136 247 87 74 chr15 22962014 22962203 -62733551 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 22962203 22962253 -62733501 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 22962253 22962278 -62733476 - L1MC4a LINE L1 -1865 5943 5920 433 199 237 0 chr15 22962439 22962570 -62733184 - MER5A DNA MER1_type -12 177 16 2414 48 52 0 chr15 22964504 22964794 -62730960 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 22964794 22964815 -62730939 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 22965895 22965916 -62729838 + AT_rich Low_complexity Low_complexity 1 21 0 458 289 46 55 chr15 22966254 22966472 -62729282 + LTR16C LTR ERVL 187 402 -89 295 342 84 61 chr15 22966687 22966950 -62728804 - L2 LINE L2 -8 3264 2996 670 328 81 36 chr15 22968047 22968519 -62727235 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 22968716 22968799 -62726955 + AT_rich Low_complexity Low_complexity 1 83 0 2365 156 6 6 chr15 22968939 22969304 -62726450 - MLT1A1 LTR MaLR 0 365 1 708 264 62 10 chr15 22969347 22969555 -62726199 - MIR SINE MIR -38 224 6 214 297 16 0 chr15 22969938 22970002 -62725752 - L2 LINE L2 -5 3308 3244 412 323 31 24 chr15 22970299 22970426 -62725328 + MIR3 SINE MIR 3 130 -78 436 265 10 0 chr15 22970621 22970723 -62725031 + MER5A DNA MER1_type 4 106 -83 199 263 83 75 chr15 22970931 22971064 -62724690 - L2 LINE L2 -182 3090 2957 354 67 0 0 chr15 22971524 22971569 -62724185 + MSTC LTR MaLR 2 46 -382 18691 157 42 11 chr15 22971569 22973235 -62722519 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 22973235 22973262 -62722492 + (GA)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 22973262 22973563 -62722191 + L1M1 LINE L1 1630 1920 -5645 2729 98 56 0 chr15 22973563 22973920 -62721834 - MER51B LTR ERV1 0 377 1 18691 157 42 11 chr15 22973920 22975138 -62720616 + L1M1 LINE L1 1920 3301 -4264 6495 95 8 12 chr15 22975154 22975530 -62720224 - L1PB1 LINE L1 0 6151 5775 2336 74 0 43 chr15 22975530 22975855 -62719899 - AluY SINE Alu 0 311 1 6495 95 8 12 chr15 22975855 22976487 -62719267 - L1PB1 LINE L1 -376 5775 5149 3025 113 2 2 chr15 22976494 22976903 -62718851 + LTR3 LTR ERVK 23 431 -1 12809 217 26 15 chr15 22976910 22979983 -62715771 - L1 LINE L1 -866 5280 2172 6281 66 0 4 chr15 22979964 22980752 -62715002 - L1PA6 LINE L1 0 6870 6086 * 10260 88 46 16 chr15 22980746 22980890 -62714864 - L1PA6 LINE L1 -3929 2934 2796 2344 106 0 6 chr15 22980890 22981201 -62714553 - AluSg SINE Alu 0 310 2 10260 88 46 16 chr15 22981201 22982326 -62713428 - L1PA6 LINE L1 -4067 2796 1607 2277 108 0 13 chr15 22982326 22982641 -62713113 - AluSx SINE Alu -1 311 1 10260 88 46 16 chr15 22982641 22982941 -62712813 - L1PA6 LINE L1 -5256 1607 1317 3397 134 6 17 chr15 22982956 22983486 -62712268 - L1PA6 LINE L1 -5706 1157 634 1145 162 5 0 chr15 22983486 22983684 -62712070 - L1PA6 LINE L1 -6663 200 2 4148 178 12 29 chr15 22983688 22984202 -62711552 + L1M1 LINE L1 3287 3808 -3757 2388 106 66 26 chr15 22984202 22984552 -62711202 - THE1B LTR MaLR 0 364 1 12203 97 25 0 chr15 22984552 22986094 -62709660 - THE1B-int LTR MaLR 0 1580 1 2289 108 61 55 chr15 22986094 22986134 -62709620 - THE1B LTR MaLR 0 364 326 2237 104 3 23 chr15 22986134 22986443 -62709311 + AluY SINE Alu 1 303 -8 2289 108 61 55 chr15 22986443 22986764 -62708990 - THE1B LTR MaLR -38 326 1 4148 178 12 29 chr15 22986764 22987446 -62708308 + L1M1 LINE L1 3805 4461 -3104 1198 199 121 49 chr15 22987449 22987756 -62707998 + MLT1A1 LTR MaLR 37 365 0 315 356 85 13 chr15 22987814 22988131 -62707623 - L2 LINE L2 -941 2373 2034 229 188 0 21 chr15 22988334 22988382 -62707372 - L2 LINE L2 -5 3308 3262 190 214 60 120 chr15 22988431 22988548 -62707206 + L2 LINE L2 3158 3267 -5 2001 132 0 3 chr15 22989685 22989973 -62705781 - AluSx SINE Alu -3 309 23 2402 55 3 7 chr15 22990568 22990857 -62704897 + AluY SINE Alu 1 288 -23 5771 118 102 16 chr15 22990898 22991912 -62703842 - MER52C LTR ERV1 -175 1103 3 635 279 135 30 chr15 22992636 22993073 -62702681 - MER90 LTR ERV1 -14 561 78 203 216 0 0 chr15 22993090 22993127 -62702627 + MIR3 SINE MIR 123 159 -49 3110 158 28 20 chr15 22993290 22993828 -62701926 - L1PA16 LINE L1 -1 6165 5624 2017 136 46 15 chr15 22993832 22994156 -62701598 - MSTB LTR MaLR -92 334 1 1086 152 94 0 chr15 22994157 22994348 -62701406 - L1PA16 LINE L1 -524 5642 5434 211 301 17 75 chr15 22994437 22994569 -62701185 - MIR SINE MIR -88 120 1 1562 233 12 0 chr15 22995531 22995861 -62699893 + MER58B DNA MER1_type 8 341 0 1882 110 61 0 chr15 22995915 22996179 -62699575 + AluSx SINE Alu 14 293 -19 25 0 0 0 chr15 22997505 22997530 -62698224 + AT_rich Low_complexity Low_complexity 1 25 0 3385 125 48 103 chr15 22997729 22998076 -62697678 + MER6A DNA MER2_type 1 365 -500 309 26 0 0 chr15 22998076 22998114 -62697640 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2379 60 0 3 chr15 22998114 22998396 -62697358 - AluSc SINE Alu -28 281 1 3385 125 48 103 chr15 22998396 22998479 -62697275 + MER6A DNA MER2_type 364 450 -415 2175 95 14 0 chr15 22998479 22998764 -62696990 - AluY SINE Alu -3 308 20 3385 125 48 103 chr15 22998764 22998971 -62696783 + MER6A DNA MER2_type 450 605 0 1002 219 90 0 chr15 22999060 22999261 -62696493 - MER20 DNA MER1_type 0 219 1 646 251 30 25 chr15 23000298 23000497 -62695257 + L1ME4a LINE L1 5572 5771 -350 310 218 89 24 chr15 23000614 23000738 -62695016 + L1ME4a LINE L1 5956 6087 -34 24 54 0 18 chr15 23000749 23000784 -62694970 + AT_rich Low_complexity Low_complexity 1 36 -19 1785 156 14 20 chr15 23000784 23001079 -62694675 - AluSx SINE Alu -19 293 1 24 54 0 18 chr15 23001079 23001099 -62694655 + AT_rich Low_complexity Low_complexity 36 55 0 1186 205 134 72 chr15 23001232 23001883 -62693871 + LTR1B LTR ERV1 105 785 0 1108 212 136 4 chr15 23001885 23002135 -62693619 - MER21B LTR ERV1 -562 301 19 307 210 17 118 chr15 23002132 23002251 -62693503 - MER21B LTR ERV1 -756 107 1 * 309 276 168 24 chr15 23002956 23003206 -62692548 - L1MC4a LINE L1 -1690 6118 5833 778 106 35 18 chr15 23003499 23003669 -62692085 + GA-rich Low_complexity Low_complexity 2 174 0 2360 72 0 0 chr15 23003865 23004155 -62691599 - AluY SINE Alu -3 308 19 203 86 86 0 chr15 23005699 23005734 -62690020 + T-rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr15 23005776 23005798 -62689956 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2341 31 0 0 chr15 23005799 23006058 -62689696 - L1PA4 LINE L1 -8 6147 5889 407 153 0 0 chr15 23006467 23006526 -62689228 - MER74A LTR ERVL -26 532 474 2181 123 3 3 chr15 23006526 23006835 -62688919 + AluSq SINE Alu 1 309 -4 346 158 0 40 chr15 23006838 23006914 -62688840 + LTR30 LTR ERV1 552 624 -98 1383 133 57 0 chr15 23006914 23007125 -62688629 + LTR12 LTR ERV1 362 584 -130 22 0 0 0 chr15 23007400 23007422 -62688332 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr15 23007426 23007462 -62688292 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1585 189 34 6 chr15 23007464 23007792 -62687962 - MER74A LTR ERVL -70 488 152 313 280 80 0 chr15 23007899 23008049 -62687705 - MER74A LTR ERVL -265 293 132 195 326 0 0 chr15 23008231 23008274 -62687480 + MIR SINE MIR 13 55 -207 2130 117 3 7 chr15 23008289 23008587 -62687167 + AluSx SINE Alu 1 297 -15 439 239 0 0 chr15 23008650 23008742 -62687012 - MIR SINE MIR -67 195 104 376 259 12 0 chr15 23008722 23008807 -62686947 + MIR SINE MIR 177 262 0 * 255 310 40 30 chr15 23010441 23010541 -62685213 + MIR SINE MIR 34 134 -74 2732 137 14 18 chr15 23010581 23011019 -62684735 + LOR1b LTR ERV1 1 436 -25 684 119 0 0 chr15 23011097 23011198 -62684556 - LTR12 LTR ERV1 -133 581 481 334 271 17 0 chr15 23011199 23011317 -62684437 - LTR30 LTR ERV1 -79 643 524 1145 145 144 15 chr15 23011317 23011567 -62684187 - LTR12 LTR ERV1 -432 2006 55 308 173 0 0 chr15 23011567 23011619 -62684135 - LTR30 LTR ERV1 -670 52 1 2096 104 7 11 chr15 23014571 23014905 -62680849 - AluSq SINE Alu 0 333 1 704 255 96 10 chr15 23015419 23015627 -62680127 + MIR SINE MIR 34 259 -3 446 82 0 0 chr15 23016316 23016377 -62679377 + MSTB2 LTR MaLR 85 145 -312 935 270 91 19 chr15 23016773 23017092 -62678662 - LTR16B LTR ERVL 0 464 123 369 0 0 0 chr15 23017159 23017200 -62678554 + (CA)n Simple_repeat Simple_repeat 2 42 0 671 315 42 52 chr15 23017246 23017331 -62678423 - L1MC4a LINE L1 -1892 5916 5832 2545 154 43 19 chr15 23017331 23017747 -62678007 + MSTB LTR MaLR 1 426 0 671 315 42 52 chr15 23017747 23018137 -62677617 - L1MC4a LINE L1 -1976 5832 5446 263 301 14 14 chr15 23018511 23018584 -62677170 - MIR SINE MIR -113 95 23 21 36 0 0 chr15 23018599 23018627 -62677127 + AT_rich Low_complexity Low_complexity 1 28 0 1698 161 17 30 chr15 23019165 23019464 -62676290 + MSTB LTR MaLR 75 369 -57 278 310 32 32 chr15 23019795 23019953 -62675801 - L1ME3A LINE L1 0 6170 6013 1155 265 53 39 chr15 23020055 23020523 -62675231 - L1MC5 LINE L1 -439 7522 7048 235 140 0 20 chr15 23020531 23020581 -62675173 + L1MEc LINE L1 1891 1939 -4457 2511 58 0 0 chr15 23020583 23020874 -62674880 + AluY SINE Alu 1 291 -20 1135 268 63 31 chr15 23020907 23021351 -62674403 - L1MCc LINE L1 -5037 1386 929 1556 135 32 35 chr15 23021620 23021902 -62673852 + AluY SINE Alu 11 291 -20 1141 268 63 31 chr15 23021935 23022379 -62673375 - L1MCc LINE L1 -5037 1386 929 186 43 0 0 chr15 23022414 23022437 -62673317 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 288 262 56 65 chr15 23022890 23022912 -62672842 + MIR SINE MIR 49 70 -192 2439 74 0 3 chr15 23022912 23023211 -62672543 + AluY SINE Alu 1 298 -13 288 262 56 65 chr15 23023211 23023295 -62672459 + MIR SINE MIR 70 154 -108 * 661 152 8 40 chr15 23023294 23023419 -62672335 - L2 LINE L2 0 3313 3193 234 258 32 21 chr15 23023422 23023515 -62672239 + MIR SINE MIR 163 256 -6 226 365 21 10 chr15 23024680 23024776 -62670978 - MIR SINE MIR -164 98 2 2737 65 9 0 chr15 23024894 23025234 -62670520 - L1PA8 LINE L1 -7 6165 5823 2514 197 123 2 chr15 23025298 23025800 -62669954 + MLT1F1 LTR MaLR 1 563 -4 279 258 57 32 chr15 23025830 23025954 -62669800 + MLT1F1-int LTR MaLR 1243 1369 -2 449 162 14 0 chr15 23025957 23026031 -62669723 + MLT1F1 LTR MaLR 3 77 -490 316 222 37 89 chr15 23026069 23026204 -62669550 + MER45A DNA AcHobo 51 178 0 295 324 37 0 chr15 23027477 23027585 -62668169 + LTR16A LTR ERVL 3 114 -336 252 333 94 18 chr15 23027630 23027801 -62667953 + LTR16A LTR ERVL 258 441 -9 485 336 87 25 chr15 23028170 23028536 -62667218 + HERV16 LTR ERVL 272 660 -4336 2186 112 27 0 chr15 23028544 23028840 -62666914 + AluSc SINE Alu 1 304 -5 1547 298 16 7 chr15 23029131 23029571 -62666183 + HERV16 LTR ERVL 947 1390 -3606 709 273 6 6 chr15 23029567 23029743 -62666011 + ERVL LTR ERVL 3021 3196 -2568 * 438 297 61 20 chr15 23029796 23030098 -62665656 + ERVL LTR ERVL 3134 3325 -1671 * 581 297 78 63 chr15 23030078 23030843 -62664911 + ERVL LTR ERVL 4237 5383 -381 933 70 0 0 chr15 23031814 23031928 -62663826 + AluSp/q SINE Alu 186 299 -14 226 176 0 103 chr15 23032868 23032936 -62662818 + L1PB1 LINE L1 105 165 -6698 14661 159 52 21 chr15 23032968 23034406 -62661348 + L1PB1 LINE L1 630 2022 -4845 2494 132 24 16 chr15 23034406 23034778 -62660976 - THE1C LTR MaLR 0 375 1 10029 105 57 73 chr15 23034778 23036383 -62659371 - THE1C-int LTR MaLR 0 1580 1 2499 109 41 16 chr15 23036383 23036749 -62659005 - THE1C LTR MaLR 0 375 1 14661 159 52 21 chr15 23036749 23041273 -62654481 + L1PB1 LINE L1 2021 6867 0 192 281 53 0 chr15 23041276 23041333 -62654421 - MIR SINE MIR -155 107 48 585 332 21 17 chr15 23043581 23043816 -62651938 - HERVL LTR ERVL -2321 3333 3098 1498 317 59 25 chr15 23043919 23044598 -62651156 - HERVL LTR ERVL -2102 2894 2193 275 374 9 0 chr15 23044813 23044920 -62650834 + MIR SINE MIR 37 144 -64 2373 73 0 3 chr15 23044942 23045229 -62650525 + AluY SINE Alu 1 286 -25 223 250 10 39 chr15 23045580 23045684 -62650070 + T-rich Low_complexity Low_complexity 2 102 0 802 82 59 15 chr15 23046081 23046216 -62649538 - AluSq/x SINE Alu -171 141 1 335 289 107 31 chr15 23046996 23047155 -62648599 + MIR SINE MIR 22 192 -70 846 201 34 61 chr15 23048018 23048312 -62647442 + pTR5 LTR ERV1 743 1028 -1410 5607 97 25 58 chr15 23048391 23049246 -62646508 + LTR12 LTR ERV1 1 826 0 189 196 0 0 chr15 23049485 23049536 -62646218 + GA-rich Low_complexity Low_complexity 1 51 0 216 0 0 0 chr15 23049566 23049590 -62646164 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2261 101 7 3 chr15 23049603 23049909 -62645845 - AluY SINE Alu -4 307 1 2154 136 3 0 chr15 23049916 23050224 -62645530 - AluSx SINE Alu -3 309 1 448 285 65 54 chr15 23050241 23050427 -62645327 + MIR3 SINE MIR 16 203 -5 1759 138 21 10 chr15 23050722 23051011 -62644743 + AluSx SINE Alu 1 292 -20 28 48 0 0 chr15 23051320 23051362 -62644392 + AT_rich Low_complexity Low_complexity 1 42 0 1156 159 0 15 chr15 23051591 23051792 -62643962 + AluSg/x SINE Alu 96 293 -19 238 238 143 0 chr15 23051985 23052048 -62643706 + MIR SINE MIR 15 86 -176 468 273 0 0 chr15 23052433 23052554 -62643200 - MIR SINE MIR -13 249 129 180 0 0 0 chr15 23052904 23052924 -62642830 + (T)n Simple_repeat Simple_repeat 1 20 0 1699 152 72 0 chr15 23054143 23054419 -62641335 - AluSx SINE Alu -16 296 1 851 249 30 0 chr15 23054670 23054867 -62640887 - MIR SINE MIR -48 214 12 268 309 187 22 chr15 23054847 23055125 -62640629 + L2 LINE L2 2583 2906 -408 * 334 267 134 35 chr15 23055361 23055563 -62640191 + L3 LINE CR1 1133 1354 -223 551 264 151 9 chr15 23058033 23058245 -62637509 - MLT1L LTR MaLR 0 615 374 23 54 0 0 chr15 23058859 23058896 -62636858 + AT_rich Low_complexity Low_complexity 1 37 0 902 276 199 28 chr15 23059086 23059549 -62636205 + MLT1H LTR MaLR 8 549 0 585 235 0 0 chr15 23060722 23060841 -62634913 - MER94 DNA DNA -15 119 1 4465 151 51 8 chr15 23061937 23062640 -62633114 + MER44D DNA MER2_type 1 605 0 330 292 141 31 chr15 23062812 23063004 -62632750 - MIR SINE MIR -19 243 31 500 313 0 8 chr15 23063965 23064093 -62631661 - MER5B DNA MER1_type -1 177 51 300 253 105 43 chr15 23064704 23064866 -62630888 + MLT1L LTR MaLR 442 613 -2 313 255 181 20 chr15 23065539 23065688 -62630066 + MIR3 SINE MIR 5 177 -31 294 237 0 0 chr15 23066502 23066578 -62629176 + CT-rich Low_complexity Low_complexity 2 77 0 2220 157 15 48 chr15 23067444 23067695 -62628059 - MER65A LTR ERV1 0 445 214 2374 67 10 3 chr15 23067695 23067993 -62627761 - AluY SINE Alu -11 300 1 2220 157 15 48 chr15 23067993 23068201 -62627553 - MER65A LTR ERV1 -231 214 1 2148 221 54 19 chr15 23068201 23068815 -62626939 - MER65A-int LTR ERV1 0 4871 4237 660 240 111 0 chr15 23068815 23068986 -62626768 - MER65A-int LTR ERV1 -739 4132 3943 347 164 14 41 chr15 23069396 23069469 -62626285 - MER65A-int LTR ERV1 -980 3956 3886 * 2110 213 97 89 chr15 23069457 23070886 -62624868 - MER65A-int LTR ERV1 -1114 4028 2640 606 216 10 50 chr15 23070971 23071170 -62624584 - MER65A-int LTR ERV1 -2868 3730 3540 7576 190 57 67 chr15 23071311 23074264 -62621490 - MER65A-int LTR ERV1 -2377 2494 54 2625 137 11 14 chr15 23074318 23074762 -62620992 - MER65A LTR ERV1 -2 443 1 213 327 100 9 chr15 23074938 23075068 -62620686 + MIR3 SINE MIR 20 160 -48 2103 127 0 0 chr15 23075311 23075595 -62620159 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr15 23075598 23075641 -62620113 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 363 351 114 41 chr15 23076068 23076649 -62619105 - L2 LINE L2 -19 3253 2626 517 289 108 60 chr15 23077069 23077715 -62618039 - L1M4 LINE L1 -2718 3428 2752 241 322 52 0 chr15 23078487 23078602 -62617152 - HAL1b LINE L1 -453 895 775 374 231 133 34 chr15 23078627 23078891 -62616863 - HAL1b LINE L1 -635 713 424 709 207 0 13 chr15 23078947 23079097 -62616657 - MER106A DNA MER1_type -88 148 1 386 297 86 40 chr15 23079166 23079388 -62616366 - HAL1b LINE L1 -1052 296 65 803 329 148 8 chr15 23081076 23081462 -62614292 + LTR16A LTR ERVL 11 450 0 323 256 110 43 chr15 23081817 23081981 -62613773 - MIR SINE MIR -43 219 45 23 0 0 0 chr15 23082276 23082299 -62613455 + AT_rich Low_complexity Low_complexity 1 23 0 1837 156 0 35 chr15 23083695 23084010 -62611744 - AluSx SINE Alu -8 304 1 314 285 89 25 chr15 23084624 23084782 -62610972 + LTR16A LTR ERVL 283 450 0 2167 102 3 10 chr15 23085268 23085562 -62610192 - AluSx SINE Alu 0 312 21 328 339 8 0 chr15 23085664 23085791 -62609963 - MIR SINE MIR -2 260 133 366 316 105 77 chr15 23085893 23086285 -62609469 + L2 LINE L2 2862 3264 -8 2469 83 0 3 chr15 23086374 23086687 -62609067 - AluSx SINE Alu 0 312 1 244 284 233 9 chr15 23086966 23087082 -62608672 + MIR SINE MIR 10 151 -111 1368 117 35 31 chr15 23088698 23088955 -62606799 + L1MA9 LINE L1 5894 6151 -161 2292 147 52 5 chr15 23088955 23089356 -62606398 + MER83 LTR ERV1 1 420 -28 604 134 71 0 chr15 23089374 23089501 -62606253 + L1MA9 LINE L1 6147 6282 -30 242 213 260 16 chr15 23089803 23089930 -62605824 + LTR33 LTR ERVL 8 165 -356 586 214 0 21 chr15 23090217 23090362 -62605392 - L1ME1 LINE L1 0 6184 6040 388 338 73 0 chr15 23090363 23090499 -62605255 - L2 LINE L2 -564 2750 2605 266 361 102 19 chr15 23090496 23090604 -62605150 - L2 LINE L2 -45 3227 3111 * 235 262 101 38 chr15 23091092 23091249 -62604505 + MIR SINE MIR 1 169 -64 1343 219 20 12 chr15 23091783 23092125 -62603629 - L1ME LINE L1 -559 5676 5332 487 242 16 0 chr15 23092125 23092249 -62603505 - MER58B DNA MER1_type 0 341 216 633 205 58 11 chr15 23092318 23092508 -62603246 - L1ME LINE L1 -880 5335 5137 2959 210 56 96 chr15 23092677 23093396 -62602358 - L1ME LINE L1 -1877 4338 3701 1391 85 5 31 chr15 23093396 23093616 -62602138 + L1MA2 LINE L1 6087 6304 0 2959 210 56 96 chr15 23093616 23094296 -62601458 - L1ME LINE L1 -2514 3701 2995 2088 124 40 0 chr15 23094314 23094637 -62601117 - L1PA15 LINE L1 -21 6144 5809 1298 258 43 5 chr15 23094643 23095089 -62600665 - L1ME LINE L1 -3231 2984 2522 2039 166 42 13 chr15 23095112 23095491 -62600263 + MLT1B LTR MaLR 1 390 0 1495 72 5 0 chr15 23095513 23095707 -62600047 - AluY SINE Alu -1 310 116 326 133 34 10 chr15 23095707 23095791 -62599963 - AluS SINE Alu -237 62 1 957 301 75 10 chr15 23096133 23096612 -62599142 - L1ME LINE L1 -5835 561 52 2501 66 0 3 chr15 23096717 23097019 -62598735 - AluY SINE Alu -10 301 1 2365 85 7 0 chr15 23097032 23097338 -62598416 - AluY SINE Alu -3 308 1 345 174 0 0 chr15 23097770 23097839 -62597915 + GA-rich Low_complexity Low_complexity 1 69 0 812 268 77 1 chr15 23098290 23098634 -62597120 + LTR16C LTR ERVL 80 491 0 1624 105 8 32 chr15 23099099 23099346 -62596408 - AluSg/x SINE Alu 0 310 70 804 220 86 19 chr15 23099786 23099995 -62595759 + MER58A DNA MER1_type 1 223 -1 647 159 0 0 chr15 23100182 23100289 -62595465 - AluSx SINE Alu -1 309 203 822 153 0 0 chr15 23100293 23100411 -62595343 - AluSx SINE Alu -195 118 1 698 189 132 26 chr15 23100438 23100666 -62595088 + LTR16A1 LTR ERVL 204 455 -2 3595 156 16 0 chr15 23101208 23101854 -62593900 + L1PA14 LINE L1 5479 6134 -27 6823 126 47 27 chr15 23102185 23103387 -62592367 - Tigger3b DNA MER2_type -2 1229 3 255 333 42 7 chr15 23104076 23104220 -62591534 - MER117 DNA MER1_type -48 149 1 296 250 69 62 chr15 23105365 23105509 -62590245 - L2 LINE L2 -5 3308 3164 197 356 23 0 chr15 23105879 23105966 -62589788 - L2 LINE L2 -647 2667 2579 2572 33 7 3 chr15 23106125 23106431 -62589323 + AluY SINE Alu 1 307 -4 2596 144 56 4 chr15 23106724 23107224 -62588530 + L1MA5 LINE L1 5770 6295 -5 1066 154 71 139 chr15 23107316 23107417 -62588337 + L1MDa LINE L1 16 122 -6418 1935 150 48 27 chr15 23107417 23107831 -62587923 - L1MA7 LINE L1 0 6291 5869 1066 154 71 139 chr15 23107831 23108124 -62587630 + L1MDa LINE L1 122 383 -6157 1022 167 11 6 chr15 23108124 23108298 -62587456 + MER5A DNA MER1_type 15 189 0 277 179 13 39 chr15 23108446 23108524 -62587230 - L1PA16 LINE L1 0 6166 6091 1001 187 16 5 chr15 23109617 23109804 -62585950 + MER5A DNA MER1_type 1 189 0 2136 127 132 8 chr15 23110278 23110657 -62585097 + MSTA LTR MaLR 1 426 -2 4254 136 14 14 chr15 23111984 23112697 -62583057 - L1PA10 LINE L1 -13 6155 5443 383 183 71 8 chr15 23113299 23113425 -62582329 - L1P4 LINE L1 -593 5575 5442 194 341 0 33 chr15 23113539 23113630 -62582124 + MER5A DNA MER1_type 3 90 -99 * 282 244 0 89 chr15 23113571 23113661 -62582093 - MER5A DNA MER1_type -22 167 86 341 289 67 37 chr15 23113790 23113925 -62581829 + MER5B DNA MER1_type 39 177 -1 312 288 136 30 chr15 23114140 23114404 -62581350 + MER102b DNA MER1_type 7 298 -43 184 250 68 0 chr15 23114453 23114497 -62581257 - L2 LINE L2 -4 3268 3222 219 69 0 0 chr15 23114831 23114860 -62580894 + (A)n Simple_repeat Simple_repeat 1 29 0 5870 55 4 0 chr15 23115866 23116596 -62579158 - L1PA7 LINE L1 -2 6152 5420 367 258 86 0 chr15 23117183 23117311 -62578443 + MIR SINE MIR 111 249 -13 923 203 154 48 chr15 23117585 23117915 -62577839 + MLT1A1 LTR MaLR 1 365 0 1639 294 112 20 chr15 23118025 23118661 -62577093 + L2 LINE L2 38 731 -2583 998 272 140 14 chr15 23118663 23119171 -62576583 + L2 LINE L2 2692 3280 -33 219 289 14 49 chr15 23119426 23119568 -62576186 + T-rich Low_complexity Low_complexity 4 140 0 5577 85 29 1 chr15 23120546 23121371 -62574383 + L1PA10 LINE L1 5321 6168 0 30 59 0 0 chr15 23123192 23123243 -62572511 + AT_rich Low_complexity Low_complexity 1 51 0 276 341 59 73 chr15 23123265 23123538 -62572216 + L2 LINE L2 3004 3272 0 330 290 87 48 chr15 23124342 23124476 -62571278 + L1MEd LINE L1 598 725 -5445 613 281 110 74 chr15 23124476 23124634 -62571120 - LTR16C LTR ERVL 0 491 340 2170 112 11 0 chr15 23124634 23124945 -62570809 + AluSp SINE Alu 1 314 0 613 281 110 74 chr15 23124945 23125257 -62570497 - LTR16C LTR ERVL -151 340 1 330 290 87 48 chr15 23125257 23125517 -62570237 + L1MEd LINE L1 725 1035 -5135 284 271 32 48 chr15 23125565 23125753 -62570001 + L1MEd LINE L1 1004 1188 -4931 311 332 133 4 chr15 23125801 23126057 -62569697 + L1MEd LINE L1 1274 1562 -4748 297 194 15 0 chr15 23126063 23126130 -62569624 + L1MEd LINE L1 1541 1608 -4702 2269 119 3 0 chr15 23126331 23126624 -62569130 + AluSx SINE Alu 1 294 -18 527 270 147 53 chr15 23127025 23127421 -62568333 + L1MEd LINE L1 3260 3692 -2437 247 294 15 0 chr15 23127830 23127898 -62567856 + LTR16C LTR ERVL 288 356 -135 400 192 50 25 chr15 23128017 23128137 -62567617 + L1MEd LINE L1 3830 3952 -2177 3815 149 87 52 chr15 23128148 23128319 -62567435 + L1MB3 LINE L1 5192 5356 -827 2280 95 10 3 chr15 23128319 23128624 -62567130 + AluSp SINE Alu 1 307 -6 3815 149 87 52 chr15 23128624 23129410 -62566344 + L1MB3 LINE L1 5356 6182 -1 689 274 109 43 chr15 23129521 23130029 -62565725 - LTR33A LTR ERVL -8 515 1 281 236 14 0 chr15 23130079 23130151 -62565603 + L1ME3A LINE L1 6010 6082 -88 1835 158 10 3 chr15 23130921 23131219 -62564535 + AluSx SINE Alu 1 300 -12 1364 278 41 25 chr15 23131298 23131462 -62564292 + LTR16A LTR ERVL 2 162 -288 1347 171 90 81 chr15 23131462 23131872 -62563882 + MLT2D LTR ERVL 1 414 0 1364 278 41 25 chr15 23131872 23132149 -62563605 + LTR16A LTR ERVL 162 450 0 887 99 0 8 chr15 23132392 23132513 -62563241 - AluSp SINE Alu -119 194 75 223 190 13 13 chr15 23132684 23132763 -62562991 + (TA)n Simple_repeat Simple_repeat 1 79 0 331 200 104 0 chr15 23133136 23133261 -62562493 + CT-rich Low_complexity Low_complexity 4 141 0 328 308 158 0 chr15 23133261 23133495 -62562259 - HAL1 LINE L1 -1205 1302 1032 1773 178 6 16 chr15 23133529 23133843 -62561911 - AluSx SINE Alu -1 311 1 2191 98 7 3 chr15 23134302 23134599 -62561155 + AluY SINE Alu 1 298 -13 372 254 41 41 chr15 23134864 23134986 -62560768 + L1ME3 LINE L1 5999 6120 -42 2403 90 3 10 chr15 23135442 23135753 -62560001 - AluY SINE Alu -2 309 1 662 297 47 8 chr15 23136158 23136394 -62559360 - LTR16A LTR ERVL -7 443 199 309 313 0 0 chr15 23136856 23137003 -62558751 + ERVL LTR ERVL 3875 4021 -1743 1115 377 50 17 chr15 23137098 23138018 -62557736 + ERVL LTR ERVL 4161 5110 -654 1400 303 52 24 chr15 23138156 23138784 -62556970 - HERV16 LTR ERVL -4350 646 1 905 333 38 16 chr15 23138784 23139210 -62556544 - LTR16A LTR ERVL 0 450 16 697 261 58 62 chr15 23139920 23140245 -62555509 + MLT1I LTR MaLR 85 408 -1 243 265 53 53 chr15 23141039 23141171 -62554583 + MIR SINE MIR 126 257 -5 1237 208 97 93 chr15 23141394 23141576 -62554178 + MLT1E LTR MaLR 1 181 -412 1853 195 3 14 chr15 23141576 23141945 -62553809 - MLT1A1 LTR MaLR 0 365 1 1237 208 97 93 chr15 23141945 23142361 -62553393 + MLT1E LTR MaLR 181 589 -4 192 309 55 0 chr15 23142797 23142852 -62552902 - MIR SINE MIR -173 89 32 25 31 0 0 chr15 23144292 23144324 -62551430 + AT_rich Low_complexity Low_complexity 1 32 0 243 291 60 34 chr15 23145229 23145346 -62550408 + L2 LINE L2 3193 3312 -1 414 236 22 0 chr15 23145967 23146056 -62549698 - MIR SINE MIR -8 254 164 670 193 139 0 chr15 23146133 23146299 -62549455 - MER3 DNA MER1_type -1 208 20 312 284 38 11 chr15 23146354 23146480 -62549274 - MIR SINE MIR -30 178 45 370 345 70 6 chr15 23147314 23147485 -62548269 + LTR16C LTR ERVL 96 277 -214 1155 251 171 7 chr15 23147507 23147921 -62547833 + MLT1E LTR MaLR 48 529 -64 2129 205 51 3 chr15 23147927 23148498 -62547256 - L1M4 LINE L1 -1537 4609 4012 413 197 68 0 chr15 23148516 23148633 -62547121 + MLT1C LTR MaLR 1 125 -342 6092 102 18 1 chr15 23148633 23148793 -62546961 + L1PA10 LINE L1 4615 4771 -1397 2456 105 41 6 chr15 23148793 23149155 -62546599 + THE1C LTR MaLR 1 375 0 6092 102 18 1 chr15 23149155 23150506 -62545248 + L1PA10 LINE L1 4771 6152 -16 3155 214 63 19 chr15 23150508 23152132 -62543622 - L1MC2 LINE L1 -195 6960 5268 1001 99 0 138 chr15 23152135 23152316 -62543438 + AluY SINE Alu 1 156 -155 222 191 0 0 chr15 23152931 23152973 -62542781 + C-rich Low_complexity Low_complexity 1 42 0 1176 134 12 0 chr15 23153136 23153308 -62542446 + AluSg/x SINE Alu 125 298 -12 683 277 80 11 chr15 23153310 23153660 -62542094 - L1MC2 LINE L1 -1678 5279 4906 * 1217 247 55 67 chr15 23153655 23154323 -62541431 - L1MC2 LINE L1 -4764 2195 1521 239 0 32 0 chr15 23154323 23154354 -62541400 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2037 134 3 3 chr15 23154359 23154658 -62541096 - AluSx SINE Alu -13 299 1 1217 247 55 67 chr15 23154658 23155003 -62540751 - L1MC2 LINE L1 -5442 1517 1187 2605 230 72 61 chr15 23155195 23155754 -62540000 - L1MC2 LINE L1 -5510 1349 797 2094 138 10 0 chr15 23155754 23156052 -62539702 - AluSx SINE Alu -11 301 1 2605 230 72 61 chr15 23156052 23156699 -62539055 - L1MC2 LINE L1 -6062 797 11 517 238 238 28 chr15 23157785 23157999 -62537755 - MIR SINE MIR -1 261 3 1196 277 56 12 chr15 23158753 23159172 -62536582 + LTR16A LTR ERVL 1 446 -4 244 352 94 13 chr15 23159239 23159472 -62536282 + L2 LINE L2 2382 2633 -681 372 275 50 63 chr15 23159488 23159710 -62536044 + LTR16C LTR ERVL 1 219 -272 1604 91 91 0 chr15 23159711 23159930 -62535824 + AluSc SINE Alu 60 298 -11 2679 180 112 26 chr15 23159940 23160619 -62535135 - LTR39 LTR ERV1 -7 776 40 475 279 34 7 chr15 23160662 23160809 -62534945 + LTR16C LTR ERVL 273 423 -68 237 226 0 0 chr15 23160837 23160890 -62534864 - LTR16C LTR ERVL 0 491 439 5487 114 35 23 chr15 23161764 23162780 -62532974 - L1MA4A LINE L1 -1 6302 5274 4407 114 20 1 chr15 23162751 23163450 -62532304 - L1PA8 LINE L1 0 6172 5461 * 3338 179 52 3 chr15 23163453 23164207 -62531547 - L1 LINE L1 -816 5330 4540 10921 32 3 1 chr15 23164208 23166503 -62529251 - L1PA3 LINE L1 -1 6154 3870 799 146 18 0 chr15 23166718 23166937 -62528817 - L1MA2 LINE L1 -14 6290 6023 206 125 94 0 chr15 23167278 23167374 -62528380 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 * 258 119 56 40 chr15 23167360 23167486 -62528268 + (TA)n Simple_repeat Simple_repeat 2 129 0 262 149 75 46 chr15 23167506 23167680 -62528074 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 280 218 53 29 chr15 23167553 23167723 -62528031 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 240 143 67 0 chr15 23167735 23167854 -62527900 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 83 42 0 0 chr15 23167854 23167972 -62527782 + AT_rich Low_complexity Low_complexity 1 118 0 185 101 30 81 chr15 23168047 23168146 -62527608 + (TATAA)n Simple_repeat Simple_repeat 1 94 0 226 173 19 0 chr15 23168153 23168205 -62527549 + (TA)n Simple_repeat Simple_repeat 2 54 0 6571 166 24 33 chr15 23168207 23169181 -62526573 - L1MA7 LINE L1 -12 6279 5297 2360 139 17 5 chr15 23169181 23169584 -62526170 - L1PA16 LINE L1 -9 6157 5750 6571 166 24 33 chr15 23169584 23170417 -62525337 - L1MA7 LINE L1 -994 5297 4497 2687 131 47 132 chr15 23170417 23171075 -62524679 + MER7C DNA MER2_type 1 602 0 6571 166 24 33 chr15 23171075 23171549 -62524205 - L1MA7 LINE L1 -1794 4497 4020 325 59 0 59 chr15 23172116 23172167 -62523587 + Tigger3(Golem) DNA MER2_type 2711 2758 -271 255 396 79 10 chr15 23173304 23173506 -62522248 - LTR16B LTR ERVL -215 249 34 296 310 26 39 chr15 23173676 23173772 -62521982 - HERVL LTR ERVL -405 5359 5264 1861 162 113 38 chr15 23173772 23174197 -62521557 + MSTB2 LTR MaLR 1 457 0 296 310 26 39 chr15 23174197 23174255 -62521499 - HERVL LTR ERVL -500 5264 5207 1649 217 3 42 chr15 23174317 23174695 -62521059 + MLT1A2 LTR MaLR 1 363 -11 282 229 0 16 chr15 23174701 23174762 -62520992 - HERVL LTR ERVL -322 4674 4615 1242 367 52 8 chr15 23174819 23175882 -62519872 - HERVL LTR ERVL -708 5056 3922 336 305 59 0 chr15 23175881 23175999 -62519755 - HERVL LTR ERVL -1444 3552 3428 * 576 314 27 30 chr15 23176099 23176437 -62519317 - HERVL LTR ERVL -2093 3561 3225 * 1857 301 64 52 chr15 23176432 23177457 -62518297 - HERVL LTR ERVL -2374 2622 1585 2393 99 51 11 chr15 23177500 23177853 -62517901 - THE1C LTR MaLR 0 375 9 1496 304 93 51 chr15 23177878 23178195 -62517559 - HERVL LTR ERVL -3531 1465 1163 499 157 49 0 chr15 23178195 23178297 -62517457 - L1MB1 LINE L1 0 6168 6062 1496 304 93 51 chr15 23178297 23178739 -62517015 - HERVL LTR ERVL -3833 1163 674 900 271 89 67 chr15 23178870 23179093 -62516661 - HERVL LTR ERVL -4489 507 290 2037 134 7 13 chr15 23179093 23179400 -62516354 - AluSx SINE Alu -5 307 3 900 271 89 67 chr15 23179400 23179670 -62516084 - HERVL LTR ERVL -4706 290 3 317 343 37 0 chr15 23179947 23180055 -62515699 - LTR16A LTR ERVL -338 112 1 1421 237 65 61 chr15 23181752 23182292 -62513462 + MLT1F LTR MaLR 1 542 0 2997 192 47 17 chr15 23182827 23183461 -62512293 - MLT1E1 LTR MaLR -1 653 1 4586 138 22 12 chr15 23184608 23185379 -62510375 - L1PA16 LINE L1 0 6166 5388 11988 48 15 2 chr15 23185380 23186963 -62508791 + L1P LINE L1 3049 4651 -1495 371 331 0 0 chr15 23189388 23189509 -62506245 + A-rich Low_complexity Low_complexity 1 121 0 4713 206 41 8 chr15 23189625 23190710 -62505044 - L1 LINE L1 -1693 4453 3334 345 362 31 8 chr15 23190850 23190977 -62504777 + L2 LINE L2 3143 3272 0 686 259 100 104 chr15 23192394 23192848 -62502906 + MLT1H LTR MaLR 41 494 -55 494 60 0 0 chr15 23192848 23192915 -62502839 - L1PA3 LINE L1 -11 6144 6078 686 259 100 104 chr15 23192915 23192969 -62502785 + MLT1H LTR MaLR 494 547 -2 5201 95 17 24 chr15 23193303 23194113 -62501641 - L1MA1 LINE L1 -131 6171 5367 516 236 36 0 chr15 23195281 23195391 -62500363 - MIR SINE MIR -138 124 11 3586 206 69 29 chr15 23195725 23196552 -62499202 - MER21B LTR ERV1 -2 861 2 569 159 16 24 chr15 23196817 23196943 -62498811 - L1MA6 LINE L1 -5 6295 6171 559 225 33 0 chr15 23196956 23197107 -62498647 - L1MB7 LINE L1 0 7246 7091 2592 182 30 18 chr15 23197108 23197887 -62497867 - L1MB7 LINE L1 -393 6847 6064 291 304 12 12 chr15 23197918 23198079 -62497675 - L1MA4 LINE L1 -9 6291 6131 480 234 47 0 chr15 23198795 23198902 -62496852 - AluSq/x SINE Alu -191 122 11 8734 195 116 17 chr15 23198917 23202814 -62492940 - L1MB7 LINE L1 -2621 4587 1 1096 219 43 21 chr15 23202833 23203162 -62492592 - L1M4 LINE L1 -1147 4999 4664 316 242 0 63 chr15 23203361 23203456 -62492298 - L1MC4 LINE L1 -1339 6703 6615 713 271 0 11 chr15 23204634 23204822 -62490932 - LTR16B LTR ERVL -47 417 232 2076 196 28 3 chr15 23205498 23205890 -62489864 + MSTA LTR MaLR 27 428 0 9254 166 29 9 chr15 23205909 23207522 -62488232 + MSTA-int LTR MaLR 7 1651 0 2238 180 22 12 chr15 23207526 23207942 -62487812 + MSTA LTR MaLR 5 424 -4 797 288 68 22 chr15 23208282 23208605 -62487149 + MLT1I LTR MaLR 34 371 -38 206 283 17 0 chr15 23208761 23208821 -62486933 + MIR SINE MIR 120 180 -82 * 361 230 36 3 chr15 23208799 23208899 -62486855 - MIR SINE MIR -84 124 21 27 0 0 0 chr15 23209025 23209052 -62486702 + AT_rich Low_complexity Low_complexity 1 27 0 403 177 21 52 chr15 23210171 23210267 -62485487 - LTR33 LTR ERVL -6 515 423 1117 80 16 106 chr15 23210577 23210873 -62484881 - L1P4 LINE L1 -715 5459 5186 2325 208 28 44 chr15 23210873 23211514 -62484240 - L1M4 LINE L1 -819 5327 4697 324 302 201 13 chr15 23211546 23211705 -62484049 - L1MEd LINE L1 -4971 1148 960 5682 186 30 22 chr15 23211924 23214186 -62481568 - L1MA4A LINE L1 -34 6269 3994 13951 62 3 0 chr15 23214353 23216106 -62479648 - L1P LINE L1 -4366 1780 23 986 168 5 25 chr15 23216150 23216347 -62479407 - AluSq SINE Alu -8 305 113 2395 75 3 6 chr15 23216713 23217047 -62478707 + L1PA3 LINE L1 5821 6153 -2 11537 212 29 9 chr15 23217047 23220517 -62475237 - L1PA15-16 LINE L1 -766 6083 2550 925 367 8 25 chr15 23220720 23221197 -62474557 - L1PA15-16 LINE L1 -6317 522 54 4378 157 26 5 chr15 23221216 23222026 -62473728 - L1MC1 LINE L1 0 6333 5507 4577 227 55 28 chr15 23222184 23223734 -62472020 - L1MC1 LINE L1 -745 5401 3849 1511 221 43 38 chr15 23223803 23224220 -62471534 + LTR52 LTR ERVL 1 419 -2 1048 232 32 53 chr15 23224221 23224506 -62471248 + LTR52-int LTR ERVL 3 281 -3275 1066 226 10 83 chr15 23224507 23224892 -62470862 - MLT1A2 LTR MaLR 0 374 18 1538 238 42 8 chr15 23224905 23225284 -62470470 + LTR52-int LTR ERVL 276 667 -2889 5395 204 67 90 chr15 23225309 23225366 -62470388 + LTR52-int LTR ERVL 799 856 -2700 2176 113 0 7 chr15 23225366 23225667 -62470087 + AluSq SINE Alu 1 299 -14 5395 204 67 90 chr15 23225667 23226271 -62469483 + LTR52-int LTR ERVL 856 1473 -2083 2091 103 0 0 chr15 23226271 23226543 -62469211 + AluSc SINE Alu 1 272 -37 5395 204 67 90 chr15 23226543 23228474 -62467280 + LTR52-int LTR ERVL 1473 3554 -2 1253 209 39 61 chr15 23228476 23228887 -62466867 + LTR52 LTR ERVL 1 402 -19 1809 199 35 0 chr15 23231188 23231585 -62464169 + L1M2 LINE L1 3754 4164 -1982 1598 176 44 34 chr15 23231586 23231881 -62463873 + AluJo SINE Alu 1 298 -14 5963 142 63 18 chr15 23231906 23233058 -62462696 - Tigger3b DNA MER2_type -27 1204 1 4933 155 42 48 chr15 23233058 23234692 -62461062 + L1M2 LINE L1 4163 5785 -506 214 235 20 0 chr15 23234694 23234745 -62461009 + (TA)n Simple_repeat Simple_repeat 2 53 0 921 217 142 8 chr15 23234745 23235121 -62460633 - MER57A LTR ERV1 -2 401 10 581 319 65 21 chr15 23235121 23235460 -62460294 - MER110-int LTR ERV1 -389 7148 6795 2009 92 4 4 chr15 23235652 23235914 -62459840 + AluY SINE Alu 35 296 -15 931 233 25 67 chr15 23236517 23236831 -62458923 - MER110-int LTR ERV1 -1370 6167 5867 3395 108 16 63 chr15 23237032 23237606 -62458148 - LTR10B LTR ERV1 0 547 1 469 332 36 36 chr15 23237612 23237998 -62457756 - MER110-int LTR ERV1 -2117 2530 2145 1645 235 12 45 chr15 23238016 23238510 -62457244 - MER110-int LTR ERV1 -1784 5753 5276 1845 120 60 21 chr15 23239944 23240227 -62455527 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 23240844 23240875 -62454879 + AT_rich Low_complexity Low_complexity 1 31 0 550 284 155 24 chr15 23241247 23241628 -62454126 - MER57B LTR ERV1 0 434 4 2429 147 35 27 chr15 23241654 23242143 -62453611 + L1MA8 LINE L1 5781 6273 -18 986 320 54 0 chr15 23243022 23243412 -62452342 + LTR16A LTR ERVL 26 436 -14 318 306 54 72 chr15 23244400 23244622 -62451132 + L1MC5 LINE L1 6613 6830 -1131 711 286 94 10 chr15 23244967 23245264 -62450490 + L2 LINE L2 2826 3147 -166 210 349 162 25 chr15 23245456 23245783 -62449971 - L2 LINE L2 -398 2916 2545 255 262 107 12 chr15 23245969 23246053 -62449701 + L2 LINE L2 2255 2346 -968 270 296 70 35 chr15 23246053 23246195 -62449559 - L2 LINE L2 -1089 2225 2079 1870 122 44 0 chr15 23248523 23248825 -62446929 + AluSx SINE Alu 1 314 0 1286 177 97 10 chr15 23249101 23249389 -62446365 + MER31B LTR ERV1 146 458 -8 535 50 12 12 chr15 23249493 23249573 -62446181 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1171 163 30 0 chr15 23249813 23250015 -62445739 - MER3 DNA MER1_type -1 208 1 231 342 91 15 chr15 23250349 23250548 -62445206 + MIR SINE MIR 48 261 -1 32 26 0 0 chr15 23250627 23250666 -62445088 + AT_rich Low_complexity Low_complexity 1 39 0 225 0 0 0 chr15 23252676 23252701 -62443053 + (TG)n Simple_repeat Simple_repeat 2 26 0 647 122 29 36 chr15 23253775 23253914 -62441840 + L1MA1 LINE L1 5962 6099 -203 828 270 117 70 chr15 23254242 23255259 -62440495 - HAL1 LINE L1 -10 2497 1433 441 190 31 8 chr15 23255836 23256105 -62439649 + (TA)n Simple_repeat Simple_repeat 1 275 0 2191 65 13 48 chr15 23259772 23260082 -62435672 + AluSp SINE Alu 1 299 -14 436 276 39 32 chr15 23260824 23260980 -62434774 - HERV16 LTR ERVL -4839 157 1 772 293 61 53 chr15 23260986 23261345 -62434409 - LTR16A LTR ERVL -6 444 83 251 246 0 14 chr15 23262324 23262393 -62433361 + (TA)n Simple_repeat Simple_repeat 1 68 0 349 326 150 27 chr15 23262427 23263119 -62432635 - L1MC/D LINE L1 -748 5398 5004 9994 74 10 30 chr15 23263690 23265076 -62430678 - SVA Other Other 0 1386 29 2538 118 31 24 chr15 23265756 23266181 -62429573 + MSTA LTR MaLR 1 428 0 1088 207 22 78 chr15 23266633 23266904 -62428850 - MLT2B3 LTR ERVL -74 480 225 333 316 167 11 chr15 23266905 23267168 -62428586 - L1MC/D LINE L1 -1954 4192 3889 232 271 51 0 chr15 23267556 23267615 -62428139 + L2 LINE L2 3228 3289 -24 433 205 49 0 chr15 23268198 23268320 -62427434 + L1MC5 LINE L1 7752 7879 -82 481 292 34 53 chr15 23269766 23269975 -62425779 + LTR16C LTR ERVL 52 256 -235 370 279 29 87 chr15 23270651 23270927 -62424827 - L2 LINE L2 -7 3265 3006 271 286 36 9 chr15 23271577 23271689 -62424065 + L1MC4a LINE L1 6055 6169 -1639 2023 143 3 0 chr15 23271779 23272079 -62423675 + AluJb SINE Alu 1 301 -11 702 207 83 0 chr15 23272321 23272490 -62423264 + MIR SINE MIR 59 241 -21 260 175 16 16 chr15 23273435 23273498 -62422256 - L1M3e LINE L1 -6448 582 520 1787 232 79 24 chr15 23273908 23274084 -62421670 - L1ME1 LINE L1 0 6184 6019 2440 120 19 0 chr15 23274084 23274452 -62421302 - THE1C LTR MaLR 0 375 1 1787 232 79 24 chr15 23274452 23274933 -62420821 - L1ME1 LINE L1 -165 6019 5486 250 327 34 42 chr15 23274976 23275239 -62420515 - HERV16 LTR ERVL -1995 3490 3230 1010 319 55 29 chr15 23275277 23275997 -62419757 - HERV16 LTR ERVL -1900 3096 2422 559 311 134 10 chr15 23276051 23276350 -62419404 - HERV16 LTR ERVL -3864 1132 797 533 314 39 24 chr15 23276462 23276717 -62419037 - HERV16 LTR ERVL -4332 664 406 290 322 13 7 chr15 23276797 23276949 -62418805 + (TA)n Simple_repeat Simple_repeat 1 153 0 411 283 59 47 chr15 23277015 23277247 -62418507 + HAL1b LINE L1 219 402 -946 1742 94 0 0 chr15 23278034 23278258 -62417496 + AluY SINE Alu 87 310 -1 2476 143 41 101 chr15 23278326 23278982 -62416772 + L1MA9 LINE L1 5696 6312 0 6182 58 10 0 chr15 23279383 23280210 -62415544 - L1PA6 LINE L1 0 6154 5320 247 240 0 0 chr15 23280270 23280320 -62415434 + L1M1 LINE L1 932 981 -6584 821 196 121 86 chr15 23280596 23281096 -62414658 + LTR1B LTR ERV1 422 983 -37 442 285 76 7 chr15 23281111 23281255 -62414499 + LTR28 LTR ERV1 867 1020 0 517 161 0 2 chr15 23281255 23281362 -62414392 - L1MC3 LINE L1 -506 7489 7190 24 0 0 0 chr15 23281433 23281457 -62414297 + AT_rich Low_complexity Low_complexity 1 24 0 2313 102 0 0 chr15 23283007 23283301 -62412453 + AluY SINE Alu 1 294 -17 1013 309 32 22 chr15 23283564 23283966 -62411788 + LTR16A LTR ERVL 21 426 -24 5446 183 55 2 chr15 23284985 23286725 -62409029 + L1PA15 LINE L1 3984 5797 -369 1803 173 51 36 chr15 23286726 23287266 -62408488 - MLT2A2 LTR ERVL 0 554 3 994 153 90 0 chr15 23287269 23287458 -62408296 + L1PA15 LINE L1 5779 5984 -181 28 0 0 0 chr15 23287831 23287859 -62407895 + AT_rich Low_complexity Low_complexity 1 28 0 1586 199 54 70 chr15 23290104 23290661 -62405093 - L1MA10 LINE L1 0 7753 7206 1669 237 119 30 chr15 23290662 23291159 -62404595 + MLT2B3 LTR ERVL 6 546 -8 6143 181 32 21 chr15 23291163 23293072 -62402682 - L1MA10 LINE L1 -532 7199 5255 2928 145 49 57 chr15 23293073 23293688 -62402066 + Tigger1 DNA MER2_type 2 611 -1807 85 20 0 0 chr15 23293693 23293792 -62401962 + AT_rich Low_complexity Low_complexity 1 99 0 3524 146 17 3 chr15 23293804 23294394 -62401360 + L1PA15 LINE L1 5567 6164 -1 745 117 124 0 chr15 23294397 23294534 -62401220 + Tigger1 DNA MER2_type 609 762 -1656 517 157 28 19 chr15 23294555 23294663 -62401091 - L1PA16 LINE L1 -20 6146 6038 6534 142 40 23 chr15 23294663 23295041 -62400713 + Tigger1 DNA MER2_type 1203 1573 -845 1494 204 6 54 chr15 23295041 23295177 -62400577 + AluJb SINE Alu 1 142 -170 2140 138 0 0 chr15 23295177 23295475 -62400279 + AluSx SINE Alu 1 298 -14 1494 204 6 54 chr15 23295475 23295652 -62400102 + AluJb SINE Alu 142 299 -13 6534 142 40 23 chr15 23295652 23296144 -62399610 + Tigger1 DNA MER2_type 1573 2101 -317 1513 202 13 23 chr15 23296144 23296446 -62399308 + AluJo SINE Alu 1 299 -13 6534 142 40 23 chr15 23296446 23296770 -62398984 + Tigger1 DNA MER2_type 2101 2418 0 2382 203 43 15 chr15 23296770 23297445 -62398309 - L1MA10 LINE L1 -2309 5256 4563 5418 140 25 3 chr15 23297608 23299511 -62396243 - L1PA15 LINE L1 -2 6814 4898 3905 219 56 10 chr15 23299516 23300537 -62395217 - L1PA15 LINE L1 -3953 2844 1724 216 0 0 0 chr15 23300537 23300561 -62395193 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3905 219 56 10 chr15 23300561 23301082 -62394672 - L1PA15 LINE L1 -5073 1724 1228 253 337 50 20 chr15 23301417 23301518 -62394236 - L1PA15 LINE L1 -5905 882 779 728 254 8 58 chr15 23301532 23301792 -62393962 - L1PA15 LINE L1 -6115 672 426 3264 247 56 55 chr15 23301798 23301835 -62393919 - L1MA10 LINE L1 -3011 4554 4519 1682 185 6 28 chr15 23301835 23302154 -62393600 - AluJb SINE Alu 0 312 1 3264 247 56 55 chr15 23302154 23302400 -62393354 - L1MA10 LINE L1 -3046 4519 4275 2262 110 0 0 chr15 23302400 23302699 -62393055 - AluSq SINE Alu -14 299 1 3264 247 56 55 chr15 23302699 23304923 -62390831 - L1MA10 LINE L1 -3290 4275 2086 703 254 116 73 chr15 23305044 23305442 -62390312 - LTR1B LTR ERV1 -411 415 1 1974 185 36 25 chr15 23305442 23305891 -62389863 + L1MC3 LINE L1 7275 7728 -57 6624 22 19 0 chr15 23305898 23306717 -62389037 - L1PA3 LINE L1 -1 6154 5320 553 258 16 0 chr15 23306777 23306901 -62388853 + L1M1 LINE L1 932 1057 -6508 1145 150 14 19 chr15 23306905 23307112 -62388642 + MER52A-int LTR ERV1 1308 1513 -5578 4736 165 44 24 chr15 23307197 23308624 -62387130 + MER52A-int LTR ERV1 1006 4817 -2179 2583 121 28 26 chr15 23308614 23309078 -62386676 + MER52A-int LTR ERV1 2300 2764 -2453 * 941 105 20 0 chr15 23309075 23309227 -62386527 + MER52A-int LTR ERV1 5920 6074 -1131 * 1405 154 55 31 chr15 23309229 23309521 -62386233 + MER52A-int LTR ERV1 4918 5216 -1 7124 169 149 39 chr15 23309522 23311103 -62384651 + MER52A LTR ERV1 1 1755 0 637 224 73 24 chr15 23311133 23311221 -62384533 - L1MB7 LINE L1 -53 6131 6049 2273 116 0 0 chr15 23311221 23311514 -62384240 + AluSg SINE Alu 6 298 -12 637 224 73 24 chr15 23311514 23311671 -62384083 - L1MB7 LINE L1 -135 6049 5874 300 27 0 0 chr15 23311671 23311708 -62384046 + (TG)n Simple_repeat Simple_repeat 2 38 0 344 171 23 34 chr15 23311726 23311814 -62383940 - AluSp/q SINE Alu -9 294 208 2326 109 0 0 chr15 23312572 23312875 -62382879 - AluSx SINE Alu -8 304 2 772 226 96 13 chr15 23312981 23313218 -62382536 - MIR SINE MIR -1 261 1 2337 93 7 0 chr15 23313508 23313809 -62381945 - AluSx SINE Alu -9 303 1 1262 139 57 0 chr15 23313809 23314053 -62381701 - L1MB7 LINE L1 -311 5873 5616 * 3031 223 16 34 chr15 23314049 23314938 -62380816 - L1M4 LINE L1 -1833 4811 3939 1129 225 47 108 chr15 23315333 23316128 -62379626 - L1M4 LINE L1 -2865 3779 3032 424 271 39 58 chr15 23316356 23316614 -62379140 - L1M4 LINE L1 -5924 618 366 235 185 46 0 chr15 23316865 23316930 -62378824 - L1M4 LINE L1 -6420 122 55 225 65 0 0 chr15 23317379 23317410 -62378344 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 721 172 52 15 chr15 23317445 23317579 -62378175 + FLAM_C SINE Alu 4 142 -1 653 158 7 48 chr15 23318863 23319009 -62376745 - L1MA4 LINE L1 -59 6241 6102 2064 138 3 0 chr15 23320152 23320443 -62375311 - AluSx SINE Alu -20 292 1 1079 236 80 21 chr15 23322096 23322255 -62373499 + L1MA1 LINE L1 17 165 -7400 2654 170 38 68 chr15 23322255 23322886 -62372868 - LTR9 LTR ERV1 0 612 1 1079 236 80 21 chr15 23322886 23323053 -62372701 + L1MA1 LINE L1 165 362 -7203 19009 162 61 13 chr15 23323465 23330447 -62365307 + L1MA1 LINE L1 176 7534 -187 1835 141 18 3 chr15 23330447 23330731 -62365023 - AluSx SINE Alu -24 288 1 19009 162 61 13 chr15 23330731 23330929 -62364825 + L1MA1 LINE L1 7534 7721 0 226 227 30 0 chr15 23333628 23333694 -62362060 + L1MC4 LINE L1 6636 6703 -1339 274 245 11 11 chr15 23333696 23333790 -62361964 + (TA)n Simple_repeat Simple_repeat 2 95 0 3486 108 16 6 chr15 23334428 23334937 -62360817 - MER75 DNA T2_type 0 514 1 1679 125 14 25 chr15 23335064 23335343 -62360411 - L1PA15 LINE L1 -147 6018 5743 8868 218 136 27 chr15 23335447 23336388 -62359366 - L1PA15 LINE L1 -620 5545 4708 2527 57 0 0 chr15 23336388 23336686 -62359068 + AluY SINE Alu 1 298 -13 8868 218 136 27 chr15 23336686 23338634 -62357120 - L1PA15 LINE L1 -1457 4708 2330 2147 262 49 31 chr15 23338734 23338899 -62356855 + L1M4 LINE L1 3064 3225 -2921 2327 87 0 3 chr15 23338899 23339209 -62356545 + AluY SINE Alu 1 309 -2 2147 262 49 31 chr15 23339209 23339840 -62355914 + L1M4 LINE L1 3225 3874 -2272 1584 207 53 79 chr15 23339921 23340237 -62355517 + L1M4 LINE L1 4704 4998 -1148 1736 183 0 3 chr15 23340237 23340521 -62355233 + AluJo SINE Alu 4 286 -26 1584 207 53 79 chr15 23340521 23340823 -62354931 + L1M4 LINE L1 4998 5306 -840 531 196 84 56 chr15 23340857 23341036 -62354718 + L1ME1 LINE L1 4574 4757 -1389 1445 83 5 0 chr15 23341037 23341229 -62354525 + AluY SINE Alu 119 311 0 2340 218 99 28 chr15 23341312 23342183 -62353571 + L1ME1 LINE L1 5180 6122 -44 2122 101 109 3 chr15 23342338 23342705 -62353049 - L1PA13 LINE L1 -4 6159 5754 1108 107 0 7 chr15 23342713 23342863 -62352891 - AluSq/x SINE Alu -163 149 1 446 103 0 0 chr15 23342864 23342932 -62352822 - L1PA13 LINE L1 -1815 4331 4264 487 161 23 0 chr15 23342933 23343020 -62352734 + AluSp/q SINE Alu 168 256 -57 3401 195 44 10 chr15 23343122 23344020 -62351734 - L1MB3 LINE L1 -249 5934 4957 2275 115 0 3 chr15 23344020 23344325 -62351429 + AluSq SINE Alu 3 306 -7 3401 195 44 10 chr15 23344325 23344915 -62350839 - L1MB3 LINE L1 -1226 4957 4389 456 183 9 43 chr15 23344926 23345041 -62350713 - LTR7 LTR ERV1 -38 412 302 535 180 5 111 chr15 23345116 23345305 -62350449 - L1MB3 LINE L1 -1752 4394 4226 2292 196 48 38 chr15 23345683 23346209 -62349545 + MER44D DNA MER2_type 2 587 -18 346 299 88 69 chr15 23346243 23346460 -62349294 + LTR16C LTR ERVL 189 409 -82 513 286 6 24 chr15 23347213 23347381 -62348373 - LTR33 LTR ERVL -356 165 1 207 0 0 0 chr15 23347406 23347429 -62348325 + (CA)n Simple_repeat Simple_repeat 2 24 0 4208 106 8 0 chr15 23348407 23349009 -62346745 - L1PA14 LINE L1 -3 6158 5552 1169 346 20 9 chr15 23349451 23349905 -62345849 + L1MEc LINE L1 139 597 -5799 926 199 77 11 chr15 23349906 23350178 -62345576 + L1MEc LINE L1 648 937 -5459 4099 255 59 45 chr15 23350233 23351076 -62344678 + L1MEc LINE L1 1043 1873 -4342 2016 147 138 5 chr15 23351076 23351512 -62344242 + LTR54B LTR ERV1 4 497 -1 4099 255 59 45 chr15 23351512 23351897 -62343857 + L1MEc LINE L1 1873 2251 -3964 2070 104 0 72 chr15 23351897 23352215 -62343539 + AluSq SINE Alu 1 295 -18 4099 255 59 45 chr15 23352215 23352328 -62343426 + L1MEc LINE L1 2251 2361 -3854 2238 67 0 14 chr15 23352328 23352611 -62343143 + AluY SINE Alu 33 311 0 4099 255 59 45 chr15 23352611 23354108 -62341646 + L1MEc LINE L1 2361 3920 -2295 1768 248 93 31 chr15 23354129 23354795 -62340959 + L1MCb LINE L1 1 707 -5338 1022 139 7 0 chr15 23354796 23354947 -62340807 + AluSp SINE Alu 136 287 -26 1428 194 41 77 chr15 23354964 23355321 -62340433 + L1MCb LINE L1 690 1049 -5144 236 105 26 0 chr15 23355321 23355359 -62340395 - U2 snRNA snRNA -145 43 5 1428 194 41 77 chr15 23355359 23355599 -62340155 + L1MCb LINE L1 1049 1296 -4897 1213 207 73 25 chr15 23355640 23356144 -62339610 + L1MCb LINE L1 1748 2146 -4418 2050 236 20 35 chr15 23356147 23356698 -62339056 - LTR55 LTR ERV -5 543 1 1292 240 64 20 chr15 23356790 23357467 -62338287 + L1MCb LINE L1 2286 2981 -3583 243 257 0 14 chr15 23359682 23359752 -62336002 + LTR16B LTR ERVL 104 172 -292 591 264 58 0 chr15 23359795 23359950 -62335804 + LTR16C LTR ERVL 324 487 -4 1867 233 136 14 chr15 23361279 23361764 -62333990 + MLT2F LTR ERVL 1 544 -119 288 324 14 7 chr15 23362552 23362691 -62333063 + LTR16C LTR ERVL 351 490 -1 9576 195 55 11 chr15 23363635 23366003 -62329751 - L1 LINE L1 -1493 5613 3142 2199 246 67 49 chr15 23366085 23366209 -62329545 - L1 LINE L1 -3958 3148 3028 1800 236 31 12 chr15 23366209 23366633 -62329121 - MSTB1 LTR MaLR 0 432 1 2199 246 67 49 chr15 23366633 23368785 -62326969 - L1 LINE L1 -4078 3028 1 1272 146 14 9 chr15 23369932 23370144 -62325610 + MSTA LTR MaLR 216 428 0 430 114 0 0 chr15 23371434 23371504 -62324250 + LTR23 LTR ERV1 368 437 0 480 179 0 0 chr15 23371504 23371599 -62324155 - L1M4 LINE L1 -723 5455 5361 1881 186 64 66 chr15 23371599 23372127 -62323627 - Tigger1 DNA MER2_type 0 2418 1892 658 211 8 0 chr15 23372128 23372261 -62323493 - FLAM_C SINE Alu -1 142 9 2761 101 11 46 chr15 23372265 23372592 -62323162 - Tigger1 DNA MER2_type -503 1915 1609 2510 55 0 0 chr15 23372592 23372885 -62322869 - AluY SINE Alu -18 293 1 2761 101 11 46 chr15 23372885 23373032 -62322722 - Tigger1 DNA MER2_type -809 1609 1458 1451 137 19 4 chr15 23373033 23373303 -62322451 - L1P LINE L1 -1584 4562 4289 265 325 24 24 chr15 23373404 23373530 -62322224 + LTR16C LTR ERVL 210 335 -156 186 290 108 21 chr15 23374694 23374787 -62320967 + MIR SINE MIR 85 185 -77 1836 171 26 11 chr15 23376411 23376792 -62318962 - L1MB5 LINE L1 -304 5870 5484 1156 176 7 37 chr15 23376812 23377084 -62318670 + LTR56 LTR ERV1 1 264 -181 4758 91 9 3 chr15 23377244 23377934 -62317820 - L1PA10 LINE L1 -39 6129 5436 2074 181 18 0 chr15 23377929 23378372 -62317382 - L1PA13 LINE L1 -2886 3911 3461 * 466 204 0 0 chr15 23378371 23378459 -62317295 - L1PA13 LINE L1 -5304 1483 1396 * 2764 273 125 6 chr15 23378462 23379284 -62316470 - L1PA13 LINE L1 -5529 1258 339 * 8842 144 171 12 chr15 23379282 23381011 -62314743 - L1PA12 LINE L1 -5577 2004 1 21 0 0 0 chr15 23382489 23382510 -62313244 + AT_rich Low_complexity Low_complexity 1 21 0 318 278 44 0 chr15 23383154 23383244 -62312510 - MIR3 SINE MIR -11 197 104 282 330 127 22 chr15 23383814 23384039 -62311715 + MIR SINE MIR 18 261 -1 2691 193 58 28 chr15 23384284 23384900 -62310854 + LTR27 LTR ERV1 2 636 0 1919 161 0 33 chr15 23385838 23386143 -62309611 - AluSx SINE Alu -17 295 1 1678 248 82 44 chr15 23386254 23386988 -62308766 + L1ME LINE L1 46 807 -5263 323 336 9 0 chr15 23389997 23390110 -62305644 + MER81 DNA DNA 1 114 0 380 288 42 47 chr15 23390111 23390302 -62305452 + L2 LINE L2 3124 3313 0 514 235 12 137 chr15 23391624 23391879 -62303875 + MER58A DNA MER1_type 1 223 -1 319 298 36 0 chr15 23392235 23392319 -62303435 - MIR3 SINE MIR -51 157 71 1716 112 42 0 chr15 23392389 23392675 -62303079 + L1MA6 LINE L1 6003 6300 0 227 203 122 14 chr15 23393658 23393732 -62302022 - MIR SINE MIR -107 155 74 200 98 0 49 chr15 23394650 23394691 -62301063 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 379 331 139 12 chr15 23394876 23395048 -62300706 + MIR SINE MIR 20 213 -49 345 197 0 0 chr15 23396364 23396435 -62299319 + T-rich Low_complexity Low_complexity 1 71 0 14103 209 22 30 chr15 23397359 23401652 -62294102 - L1P3 LINE L1 -2185 4276 8 1842 221 29 58 chr15 23401663 23402284 -62293470 - L1M4 LINE L1 -784 5362 4760 306 118 0 0 chr15 23402319 23402370 -62293384 - L1MA8 LINE L1 -5 6286 6236 26 30 0 0 chr15 23402489 23402522 -62293232 + AT_rich Low_complexity Low_complexity 1 33 0 3610 179 4 30 chr15 23402531 23403397 -62292357 - L1MA4 LINE L1 -295 6005 5160 1779 189 27 2 chr15 23403390 23403798 -62291956 + L1MA4 LINE L1 4735 5152 -994 * 6159 232 84 22 chr15 23403792 23407105 -62288649 - L1MA8 LINE L1 -48 6243 2718 2408 87 0 6 chr15 23408020 23408332 -62287422 + AluY SINE Alu 1 310 -1 265 268 0 12 chr15 23409060 23409142 -62286612 - LTR16C LTR ERVL -4 487 407 26 64 0 0 chr15 23409817 23409864 -62285890 + AT_rich Low_complexity Low_complexity 1 47 0 2044 128 4 0 chr15 23409898 23410205 -62285549 + AluSx SINE Alu 1 308 0 190 235 59 123 chr15 23410418 23410605 -62285149 - L3 LINE CR1 -182 1395 1221 249 33 0 0 chr15 23410871 23410901 -62284853 + (T)n Simple_repeat Simple_repeat 1 30 0 359 323 39 43 chr15 23411250 23411660 -62284094 - MLT2F LTR ERVL 0 663 211 2453 117 13 122 chr15 23412321 23412711 -62283043 + LTR12 LTR ERV1 1 317 -397 1811 84 26 131 chr15 23412711 23413054 -62282700 - AluYb8 SINE Alu -1 307 1 2453 117 13 122 chr15 23413054 23413203 -62282551 + LTR12 LTR ERV1 317 481 -233 270 262 54 7 chr15 23413764 23413979 -62281775 + (TTTAA)n Simple_repeat Simple_repeat 1 225 0 3082 144 71 76 chr15 23415004 23415797 -62279957 - L1MA9 LINE L1 -2 6310 5522 1111 171 12 29 chr15 23415925 23416170 -62279584 - L1M3 LINE L1 -580 5591 5351 284 269 59 42 chr15 23417679 23417798 -62277956 + ERVL LTR ERVL 2133 2253 -3511 25 99 0 0 chr15 23417887 23417968 -62277786 + AT_rich Low_complexity Low_complexity 1 81 0 23 54 0 0 chr15 23418054 23418091 -62277663 + AT_rich Low_complexity Low_complexity 1 37 0 5963 109 27 0 chr15 23418110 23419183 -62276571 + L1PB1 LINE L1 5045 6151 0 21 0 0 0 chr15 23419206 23419227 -62276527 + AT_rich Low_complexity Low_complexity 1 21 0 1650 103 4 0 chr15 23419753 23419987 -62275767 - THE1C LTR MaLR -140 235 1 1463 245 45 5 chr15 23421641 23422020 -62273734 - MSTD LTR MaLR 0 396 3 914 177 33 6 chr15 23423848 23424029 -62271725 - MER2 DNA MER2_type -158 187 2 2428 65 0 0 chr15 23426069 23426379 -62269375 - L1PA7 LINE L1 -5 6149 5840 480 238 0 9 chr15 23426991 23427096 -62268658 - MER5B DNA MER1_type -73 105 2 247 294 67 50 chr15 23427409 23427589 -62268165 - L3 LINE CR1 -200 1377 1195 239 264 0 0 chr15 23427594 23427647 -62268107 - MIR3 SINE MIR -5 203 151 497 308 29 62 chr15 23429319 23429553 -62266201 - MIR SINE MIR -21 241 18 305 190 25 0 chr15 23429805 23429884 -62265870 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 206 238 32 16 chr15 23430006 23430069 -62265685 - L3 LINE CR1 -875 702 639 212 213 16 0 chr15 23430562 23430623 -62265131 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 4596 162 39 31 chr15 23430667 23431686 -62264068 + L1MA9 LINE L1 5285 6311 -1 246 218 0 69 chr15 23431729 23431769 -62263985 + L1MC/D LINE L1 4176 4208 -1938 686 298 103 69 chr15 23431769 23432273 -62263481 + LTR33 LTR ERVL 1 521 0 246 218 0 69 chr15 23432273 23432319 -62263435 + L1MC/D LINE L1 4208 4256 -1890 343 242 116 37 chr15 23432359 23432574 -62263180 + L1MC/D LINE L1 4316 4547 -1599 562 244 114 12 chr15 23432743 23432983 -62262771 - MLT1G LTR MaLR -273 257 5 296 395 3 33 chr15 23433509 23433813 -62261941 - HERVL LTR ERVL -507 5147 4853 1560 339 48 22 chr15 23433876 23434929 -62260825 - HERVL LTR ERVL -3121 2533 1453 677 190 28 38 chr15 23435202 23435413 -62260341 - Charlie1 DNA MER1_type -1 2760 2552 1240 94 18 0 chr15 23435422 23435593 -62260161 - L1PA8 LINE L1 -11 6161 5988 4734 207 62 19 chr15 23435644 23436942 -62258812 - Charlie1a DNA MER1_type -101 1354 1 394 320 17 17 chr15 23437227 23437405 -62258349 - HERVL LTR ERVL -4456 540 363 180 0 0 0 chr15 23437507 23437527 -62258227 + (CA)n Simple_repeat Simple_repeat 2 21 0 184 135 19 19 chr15 23437566 23437618 -62258136 + (TA)n Simple_repeat Simple_repeat 2 53 0 425 291 52 72 chr15 23437806 23438057 -62257697 - LTR16C LTR ERVL -8 483 238 261 276 117 15 chr15 23438406 23438671 -62257083 + L1MC/D LINE L1 5015 5306 -840 372 303 35 19 chr15 23438735 23438932 -62256822 + L1MC/D LINE L1 5496 5704 -512 494 270 107 17 chr15 23439005 23439183 -62256571 + MIR SINE MIR 54 247 -15 337 258 33 67 chr15 23439316 23439436 -62256318 + MIR SINE MIR 147 262 0 4958 113 41 1 chr15 23439489 23440295 -62255459 + L1PA13 LINE L1 5317 6154 -9 280 260 1 0 chr15 23440991 23441111 -62254643 + MER5A DNA MER1_type 9 110 -79 205 298 0 0 chr15 23442921 23442978 -62252776 + T-rich Low_complexity Low_complexity 1 57 0 408 313 15 15 chr15 23442978 23443112 -62252642 - L2 LINE L2 -5 3267 3134 209 224 0 20 chr15 23443601 23443650 -62252104 + A-rich Low_complexity Low_complexity 2 49 0 542 345 121 42 chr15 23444574 23445119 -62250635 - L3 LINE CR1 -3 1574 987 2393 97 20 6 chr15 23445289 23445639 -62250115 - THE1A LTR MaLR 0 355 1 196 358 21 21 chr15 23445830 23445925 -62249829 + MIR SINE MIR 50 144 -64 3917 203 36 18 chr15 23446453 23447794 -62247960 - L1PA13 LINE L1 -4023 2774 1397 3681 214 55 25 chr15 23447982 23448847 -62246907 - L1PA13 LINE L1 -5895 892 2 623 292 63 47 chr15 23449177 23450127 -62245627 - L1MEd LINE L1 -4705 1605 602 225 309 143 37 chr15 23450172 23450389 -62245365 - L1MEd LINE L1 -5612 507 268 336 330 76 13 chr15 23450727 23451030 -62244724 - L1ME LINE L1 -348 5773 5452 261 231 356 0 chr15 23452841 23452949 -62242805 + MIR SINE MIR 37 180 -28 829 298 59 58 chr15 23453392 23453997 -62241757 + L2 LINE L2 2642 3305 -8 3843 122 64 73 chr15 23454362 23455143 -62240611 + LTR1 LTR ERV1 12 785 0 1295 55 114 64 chr15 23455945 23456164 -62239590 + MER30 DNA MER1_type 1 230 0 2155 131 0 10 chr15 23457379 23457684 -62238070 + AluSx SINE Alu 3 304 -8 211 329 57 0 chr15 23457874 23457944 -62237810 + MIR SINE MIR 39 112 -150 2136 106 3 14 chr15 23458124 23458416 -62237338 + AluSg SINE Alu 1 289 -21 555 262 85 13 chr15 23458434 23458626 -62237128 + MIR SINE MIR 15 221 -41 665 296 126 14 chr15 23459735 23459958 -62235796 + MIR SINE MIR 14 261 -1 320 323 10 0 chr15 23460215 23460311 -62235443 - MIR SINE MIR -111 151 55 207 0 0 0 chr15 23461358 23461381 -62234373 + (T)n Simple_repeat Simple_repeat 1 23 0 424 249 62 110 chr15 23462337 23462610 -62233144 - MER112 DNA MER1_type 0 260 1 280 133 48 24 chr15 23463222 23463305 -62232449 + (TA)n Simple_repeat Simple_repeat 2 86 0 412 342 49 4 chr15 23463668 23463893 -62231861 + LTR16C LTR ERVL 4 238 -253 3870 226 75 43 chr15 23463899 23464985 -62230769 + MLT1A1-int LTR MaLR 616 1735 0 1896 174 22 16 chr15 23464985 23465348 -62230406 + MLT1A1 LTR MaLR 1 365 0 2009 138 0 0 chr15 23465357 23465648 -62230106 + AluSx SINE Alu 1 291 -21 369 0 0 0 chr15 23467083 23467124 -62228630 + (TG)n Simple_repeat Simple_repeat 2 42 0 463 265 235 10 chr15 23467422 23467618 -62228136 - MIR SINE MIR -3 259 20 329 329 29 15 chr15 23467824 23467961 -62227793 + MIR SINE MIR 121 259 -3 219 311 48 17 chr15 23467990 23468127 -62227627 - MIR SINE MIR -64 144 15 212 300 0 0 chr15 23469302 23469352 -62226402 - L2 LINE L2 -4 3268 3219 565 211 126 53 chr15 23471372 23471541 -62224213 + MER5A DNA MER1_type 4 186 -3 1461 209 78 62 chr15 23471999 23472248 -62223506 - MLT1D LTR MaLR 0 505 261 2140 136 0 0 chr15 23472248 23472549 -62223205 - AluSx SINE Alu -9 303 3 1461 209 78 62 chr15 23472549 23472796 -62222958 - MLT1D LTR MaLR -244 261 1 409 228 53 18 chr15 23473238 23473352 -62222402 - MIR3 SINE MIR -7 201 84 346 200 171 0 chr15 23474957 23475062 -62220692 + L1ME4a LINE L1 5961 6083 -38 690 285 88 0 chr15 23476345 23476573 -62219181 + MIR SINE MIR 15 262 0 209 57 29 0 chr15 23476669 23476704 -62219050 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 589 291 69 34 chr15 23476811 23477061 -62218693 - MIR SINE MIR 0 262 9 222 290 18 41 chr15 23477822 23477991 -62217763 + (CTTAT)n Simple_repeat Simple_repeat 3 167 0 * 317 262 16 44 chr15 23477865 23478048 -62217706 + T-rich Low_complexity Low_complexity 2 179 0 401 252 67 0 chr15 23479072 23479191 -62216563 + MIR SINE MIR 65 191 -71 327 279 201 0 chr15 23480413 23480567 -62215187 - MIR SINE MIR -15 247 63 22 0 0 0 chr15 23482631 23482653 -62213101 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 23482945 23482969 -62212785 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 23483024 23483052 -62212702 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 23483126 23483158 -62212596 + AT_rich Low_complexity Low_complexity 1 32 0 1057 330 82 19 chr15 23483765 23484226 -62211528 - MLT2F LTR ERVL -157 506 17 1125 285 58 5 chr15 23484386 23485053 -62210701 - ERVL LTR ERVL -170 5484 4782 2944 232 45 34 chr15 23485113 23486376 -62209378 - L1ME1 LINE L1 -5 6397 5124 2341 71 0 52 chr15 23486376 23486701 -62209053 - AluY SINE Alu -3 308 1 412 276 15 4 chr15 23486759 23486906 -62208848 - L1ME1 LINE L1 -3857 2525 2381 23 33 0 0 chr15 23486926 23486956 -62208798 + AT_rich Low_complexity Low_complexity 1 30 0 183 386 63 8 chr15 23487131 23487258 -62208496 - L2 LINE L2 0 3313 3180 454 296 52 65 chr15 23487285 23487687 -62208067 - MLT1I LTR MaLR -8 401 5 681 295 36 39 chr15 23488939 23489198 -62206556 + MIR SINE MIR 16 261 -1 181 391 0 0 chr15 23489230 23489299 -62206455 + L2 LINE L2 2275 2343 -971 27 29 0 0 chr15 23490297 23490331 -62205423 + AT_rich Low_complexity Low_complexity 1 34 0 243 221 26 0 chr15 23490899 23490976 -62204778 + (TA)n Simple_repeat Simple_repeat 1 79 0 6814 44 1 0 chr15 23491236 23492072 -62203682 - L1P LINE L1 -1932 4214 3378 4924 30 0 0 chr15 23492072 23492645 -62203109 + L1PA3 LINE L1 5579 6152 -3 266 86 0 0 chr15 23492728 23492763 -62202991 + Tigger1 DNA MER2_type 2061 2095 -323 2369 189 6 2 chr15 23493578 23494085 -62201669 - L1PA16 LINE L1 -1336 4810 4302 2071 216 12 12 chr15 23494083 23494565 -62201189 + L1PA16 LINE L1 4804 5285 -861 * 636 105 0 32 chr15 23494574 23494669 -62201085 + FLAM_C SINE Alu 36 127 -16 4823 150 6 4 chr15 23494671 23495458 -62200296 + L1PA16 LINE L1 5340 6128 -38 1078 179 26 33 chr15 23495497 23495770 -62199984 - L1MB7 LINE L1 0 6184 5914 23 33 0 0 chr15 23495779 23495809 -62199945 + AT_rich Low_complexity Low_complexity 1 30 0 1128 185 45 0 chr15 23495822 23496044 -62199710 - L1MB7 LINE L1 -265 5919 5688 907 184 65 5 chr15 23496035 23496252 -62199502 - L1MB7 LINE L1 -1006 5140 4911 * 387 211 0 0 chr15 23497155 23497250 -62198504 + (TA)n Simple_repeat Simple_repeat 1 95 0 309 278 0 22 chr15 23497252 23497342 -62198412 - L1MC4 LINE L1 -1339 6703 6616 207 235 0 44 chr15 23497345 23497413 -62198341 + (TATG)n Simple_repeat Simple_repeat 4 68 0 396 332 197 0 chr15 23498300 23498493 -62197261 + MIR SINE MIR 14 244 -18 5414 45 3 3 chr15 23498555 23499229 -62196525 - L1PA3 LINE L1 -2 6153 5480 306 314 140 69 chr15 23499426 23500179 -62195575 + L2 LINE L2 2405 3262 -10 535 368 104 35 chr15 23500196 23500993 -62194761 + L2 LINE L2 2229 3086 -186 226 134 0 75 chr15 23503079 23503146 -62192608 + (TTTTTA)n Simple_repeat Simple_repeat 3 64 0 331 300 42 33 chr15 23503612 23503732 -62192022 + L2 LINE L2 3191 3311 -2 278 352 94 8 chr15 23504022 23504150 -62191604 + L2 LINE L2 3132 3270 -2 214 329 162 18 chr15 23505147 23505314 -62190440 - L3b LINE CR1 -210 1373 1183 353 307 13 0 chr15 23506473 23506548 -62189206 + MER91A DNA MER1_type 2 77 -119 1680 149 60 46 chr15 23508386 23508547 -62187207 + THE1C LTR MaLR 1 158 -217 1975 83 8 0 chr15 23508547 23508800 -62186954 - AluSq SINE Alu -9 304 50 1680 149 60 46 chr15 23508800 23509008 -62186746 + THE1C LTR MaLR 158 375 0 547 271 7 7 chr15 23509067 23509211 -62186543 + MIR3 SINE MIR 60 203 -5 22 0 0 0 chr15 23509760 23509782 -62185972 + AT_rich Low_complexity Low_complexity 1 22 0 479 211 0 10 chr15 23510574 23510678 -62185076 - MIR SINE MIR 0 262 160 272 368 14 49 chr15 23511397 23511541 -62184213 + MIR SINE MIR 29 167 -95 35 41 0 0 chr15 23511654 23511703 -62184051 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 23512021 23512049 -62183705 + AT_rich Low_complexity Low_complexity 1 28 0 197 306 0 0 chr15 23512975 23513024 -62182730 - MER5B DNA MER1_type -129 49 1 1501 167 46 25 chr15 23513937 23514219 -62181535 - AluJo SINE Alu -15 297 10 1113 299 144 11 chr15 23516733 23517443 -62178311 + L2 LINE L2 2497 3310 -3 219 221 47 35 chr15 23517823 23517909 -62177845 - MIR SINE MIR -46 216 130 2903 164 44 2 chr15 23518386 23518928 -62176826 - L1MC3 LINE L1 -8 7777 7213 22 35 0 0 chr15 23519319 23519348 -62176406 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 23519424 23519446 -62176308 + AT_rich Low_complexity Low_complexity 1 22 0 1228 202 0 18 chr15 23522700 23522923 -62172831 - AluJo SINE Alu -93 219 1 4614 135 12 1 chr15 23523199 23523947 -62171807 - L1PA16 LINE L1 0 6166 5411 1433 202 24 9 chr15 23524048 23524385 -62171369 - L1PA16 LINE L1 -1320 4826 4485 12356 238 41 23 chr15 23524648 23529702 -62166052 + L1PA15 LINE L1 808 5951 -1633 811 195 38 5 chr15 23529702 23529887 -62165867 + L1PA15 LINE L1 6318 6508 -1076 5257 130 28 6 chr15 23529889 23530744 -62165010 + L1PA15 LINE L1 6723 7596 -7 18648 29 0 0 chr15 23530887 23533133 -62162621 - L1P LINE L1 -743 5403 3158 183 220 0 0 chr15 23535309 23535359 -62160395 + CT-rich Low_complexity Low_complexity 2 51 0 226 364 155 35 chr15 23535532 23535906 -62159848 - L2 LINE L2 -556 2758 2340 4973 16 7 0 chr15 23536357 23536931 -62158823 - L1PA2 LINE L1 0 6155 5578 7991 28 0 0 chr15 23536931 23537906 -62157848 + L1P LINE L1 2600 3574 -2572 337 280 193 20 chr15 23538824 23538974 -62156780 - MIR SINE MIR -79 183 8 971 221 18 4 chr15 23539486 23539712 -62156042 + AluJo SINE Alu 82 310 -2 233 347 94 28 chr15 23539763 23539976 -62155778 - L2 LINE L2 -234 3038 2812 2770 133 48 9 chr15 23540285 23541157 -62154597 + L1PB4 LINE L1 5068 6113 -43 191 322 8 68 chr15 23541214 23541332 -62154422 + L2 LINE L2 2933 3043 -229 901 265 100 0 chr15 23541337 23541597 -62154157 - LTR16A1 LTR ERVL -4 453 168 2020 147 3 3 chr15 23543098 23543397 -62152357 - AluSx SINE Alu -13 299 1 564 320 39 58 chr15 23544047 23544406 -62151348 - LTR67 LTR ERVL 0 557 206 19616 47 6 2 chr15 23544428 23547688 -62148066 - L1PA5 LINE L1 -8 6146 2876 9525 57 17 1 chr15 23547688 23548924 -62146830 + L1PA5 LINE L1 1626 2881 -3265 272 211 70 28 chr15 23548942 23549013 -62146741 - LTR67 LTR ERVL -374 183 110 432 342 75 12 chr15 23549994 23550325 -62145429 - ERVL LTR ERVL -290 5364 5016 1152 291 138 54 chr15 23550560 23551398 -62144356 - ERVL LTR ERVL -1093 4671 3763 968 328 63 11 chr15 23551416 23551767 -62143987 + LTR16A LTR ERVL 77 445 -5 350 321 92 41 chr15 23551771 23552042 -62143712 - ERVL LTR ERVL -2068 3696 3412 589 303 23 46 chr15 23553012 23553230 -62142524 + MIR SINE MIR 50 262 0 434 300 0 0 chr15 23553740 23553860 -62141894 + MER103 DNA DNA 1 120 -46 976 203 147 0 chr15 23553897 23554163 -62141591 - MER33 DNA MER1_type -19 305 1 1979 144 21 0 chr15 23556074 23556414 -62139340 + L1PA13 LINE L1 5803 6149 -14 327 336 8 0 chr15 23556513 23556641 -62139113 + (TG)n Simple_repeat Simple_repeat 2 130 0 22 0 0 0 chr15 23556655 23556677 -62139077 + AT_rich Low_complexity Low_complexity 1 22 0 2104 125 0 7 chr15 23556725 23557022 -62138732 + AluSg SINE Alu 1 295 -15 327 307 100 42 chr15 23557465 23558096 -62137658 - L1ME3A LINE L1 -226 5944 5293 1333 311 64 37 chr15 23558225 23558931 -62136823 + L1MA7 LINE L1 10 1045 -6164 5415 230 58 35 chr15 23559136 23560727 -62135027 + L1MA7 LINE L1 1699 3252 -3956 2160 102 0 11 chr15 23560727 23561033 -62134721 - AluSg SINE Alu 0 303 1 5415 230 58 35 chr15 23561033 23562904 -62132850 + L1MA7 LINE L1 3252 4952 -2256 2285 188 12 82 chr15 23562906 23563476 -62132278 + L1P3 LINE L1 630 1159 -5302 6360 89 7 15 chr15 23563491 23564682 -62131072 + L1PA10 LINE L1 4979 6166 -2 7211 180 22 33 chr15 23564682 23565584 -62130170 + L1MA7 LINE L1 4942 5852 -1501 182 37 37 0 chr15 23565584 23565611 -62130143 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7211 180 22 33 chr15 23565611 23566860 -62128894 + L1MA7 LINE L1 5852 7064 -289 2250 112 0 6 chr15 23566860 23567174 -62128580 + AluSx SINE Alu 1 312 0 7211 180 22 33 chr15 23567174 23567460 -62128294 + L1MA7 LINE L1 7064 7352 -1 3399 68 0 0 chr15 23568121 23568575 -62127179 - L1P LINE L1 -844 5302 4849 3391 74 37 8 chr15 23568575 23569050 -62126704 + L1PA7 LINE L1 5653 6153 -1 2367 94 0 0 chr15 23569122 23569430 -62126324 - AluSc SINE Alu -1 308 1 487 222 0 0 chr15 23569922 23570012 -62125742 + AluSx SINE Alu 1 90 -222 1539 93 9 0 chr15 23570112 23570326 -62125428 + AluSx SINE Alu 87 302 -10 2393 87 0 0 chr15 23570558 23570867 -62124887 + AluY SINE Alu 1 309 -2 1622 224 74 2 chr15 23571114 23571521 -62124233 + MER63B DNA MER1_type 1 436 0 393 300 46 8 chr15 23571847 23571977 -62123777 + MIR SINE MIR 40 174 -88 491 202 8 0 chr15 23571995 23572114 -62123640 + (TA)n Simple_repeat Simple_repeat 1 120 0 404 234 114 13 chr15 23572235 23572393 -62123361 - L1MC4a LINE L1 -1897 5911 5738 1587 109 0 5 chr15 23572436 23572657 -62123097 - AluSc SINE Alu -8 301 82 285 281 0 97 chr15 23572815 23572856 -62122898 + MIR SINE MIR 160 203 -59 2300 93 3 0 chr15 23572856 23573157 -62122597 + AluSq SINE Alu 1 302 -11 285 281 0 97 chr15 23573157 23573229 -62122525 + MIR SINE MIR 203 262 0 1752 163 30 7 chr15 23574116 23574417 -62121337 - AluJb SINE Alu -4 308 1 396 59 0 0 chr15 23575221 23575272 -62120482 + (TG)n Simple_repeat Simple_repeat 1 51 0 514 353 75 18 chr15 23575640 23576079 -62119675 + L2 LINE L2 1836 2299 -1015 23 54 0 0 chr15 23576621 23576658 -62119096 + AT_rich Low_complexity Low_complexity 1 37 0 182 37 37 0 chr15 23576939 23576966 -62118788 + (TC)n Simple_repeat Simple_repeat 1 28 0 360 275 80 29 chr15 23577011 23577149 -62118605 - L3b LINE CR1 -192 1391 1247 1405 300 55 27 chr15 23577599 23578710 -62117044 + L1ME2 LINE L1 45 1058 -4920 1025 310 28 15 chr15 23578716 23579245 -62116509 + L1ME2 LINE L1 4463 4998 -1082 1760 249 102 33 chr15 23579260 23580172 -62115582 + L1ME2 LINE L1 5118 6098 0 233 311 0 0 chr15 23580237 23580311 -62115443 + L1MC4 LINE L1 7928 8001 -41 2193 89 45 0 chr15 23580376 23580667 -62115087 + AluSq SINE Alu 1 304 -9 38425 74 5 2 chr15 23580869 23587006 -62108748 + L1PA5 LINE L1 2 6153 -1 1430 252 117 21 chr15 23586990 23587685 -62108069 + L1ME1 LINE L1 5316 6136 -30 * 1335 165 37 0 chr15 23588367 23588639 -62107115 - L1MA8 LINE L1 -5 6286 6005 190 0 67 0 chr15 23588977 23589007 -62106747 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 35 24 0 0 chr15 23590015 23590057 -62105697 + AT_rich Low_complexity Low_complexity 1 42 0 298 297 0 25 chr15 23590147 23590226 -62105528 + (CATATA)n Simple_repeat Simple_repeat 4 81 -37 1858 181 83 10 chr15 23590226 23590623 -62105131 - MSTB LTR MaLR 0 426 1 298 297 0 25 chr15 23590623 23590661 -62105093 + (CATATA)n Simple_repeat Simple_repeat 81 118 0 13670 129 29 13 chr15 23590676 23590982 -62104772 + Tigger1 DNA MER2_type 17 317 -2101 189 0 0 0 chr15 23590982 23591003 -62104751 + (TC)n Simple_repeat Simple_repeat 2 22 0 13670 129 29 13 chr15 23591003 23593060 -62102694 + Tigger1 DNA MER2_type 317 2418 0 24 32 0 0 chr15 23593376 23593407 -62102347 + AT_rich Low_complexity Low_complexity 1 31 0 2258 60 0 0 chr15 23593473 23593758 -62101996 - L1PA5 LINE L1 -4 6150 5866 32 0 0 0 chr15 23593763 23593795 -62101959 + AT_rich Low_complexity Low_complexity 1 32 0 512 260 109 82 chr15 23594040 23594344 -62101410 - L3 LINE CR1 -2 1575 1264 462 342 53 16 chr15 23594843 23595033 -62100721 + MIR SINE MIR 31 227 -35 201 132 0 0 chr15 23595517 23595555 -62100199 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 200 296 169 28 chr15 23595670 23595812 -62099942 - L2 LINE L2 -189 3083 2922 399 379 25 15 chr15 23596433 23596636 -62099118 - L2 LINE L2 -557 2757 2553 287 333 32 0 chr15 23596642 23596858 -62098896 + L1M4 LINE L1 4001 4223 -1923 288 297 66 42 chr15 23597264 23597476 -62098278 + MLT1L LTR MaLR 170 386 -229 291 299 170 51 chr15 23597523 23597918 -62097836 - L2 LINE L2 -1136 2178 1737 456 267 19 43 chr15 23599344 23599505 -62096249 + MIR3 SINE MIR 47 203 -5 4805 147 8 4 chr15 23600458 23601284 -62094470 - L1PA16 LINE L1 0 6166 5337 2898 212 24 4 chr15 23601278 23601980 -62093774 + L1PA16 LINE L1 4637 5352 -794 * 316 294 14 21 chr15 23602152 23602288 -62093466 + MIR SINE MIR 20 152 -73 198 0 0 0 chr15 23602536 23602558 -62093196 + (TA)n Simple_repeat Simple_repeat 2 23 0 233 236 0 0 chr15 23602558 23602613 -62093141 + T-rich Low_complexity Low_complexity 1 55 0 7042 18 0 1 chr15 23602632 23603489 -62092265 - L1PA3 LINE L1 -4 6151 5297 352 271 173 28 chr15 23603921 23604135 -62091619 + MIR SINE MIR 3 247 -15 1697 314 45 21 chr15 23604470 23605476 -62090278 - L1MEc LINE L1 -5349 1047 18 263 216 0 0 chr15 23605603 23605654 -62090100 - LTR33 LTR ERVL -392 129 79 372 247 0 0 chr15 23605741 23605826 -62089928 - LTR33 LTR ERVL -436 85 1 1083 308 24 12 chr15 23606076 23606495 -62089259 - LTR16A LTR ERVL -5 445 22 363 299 48 7 chr15 23607183 23607330 -62088424 - MLT1J2 LTR MaLR -14 436 284 447 130 13 0 chr15 23607419 23607496 -62088258 - MLT1J2 LTR MaLR -305 145 68 363 226 239 13 chr15 23607576 23607731 -62088023 - L1MEd LINE L1 -5928 191 2 345 217 0 0 chr15 23607805 23607865 -62087889 + L2 LINE L2 3205 3264 -8 299 274 94 0 chr15 23608769 23608875 -62086879 + MIR3 SINE MIR 87 202 -6 226 274 36 12 chr15 23610170 23610254 -62085500 - MLT1J LTR MaLR -197 314 229 410 229 35 2 chr15 23613277 23613411 -62082343 - L1MD3 LINE L1 0 7995 6221 352 291 52 39 chr15 23613515 23613745 -62082009 - Charlie7 DNA MER1_type -1876 736 500 6828 70 6 1 chr15 23613745 23614674 -62081080 + L1PA7 LINE L1 5222 6154 0 352 291 52 39 chr15 23614674 23614749 -62081005 - Charlie7 DNA MER1_type -2112 500 427 424 300 58 53 chr15 23615114 23615304 -62080450 - MIR SINE MIR -60 202 12 357 209 23 147 chr15 23615852 23616029 -62079725 - MER69 DNA AcHobo -9 2517 14 21 36 0 0 chr15 23616355 23616383 -62079371 + AT_rich Low_complexity Low_complexity 1 28 0 462 245 0 0 chr15 23617352 23617450 -62078304 - Tigger7 DNA MER2_type 0 2487 2390 1218 198 0 17 chr15 23617459 23617696 -62078058 - Tigger7 DNA MER2_type -469 264 32 22 0 0 0 chr15 23618359 23618381 -62077373 + AT_rich Low_complexity Low_complexity 1 22 0 1142 249 35 51 chr15 23618675 23619166 -62076588 - Charlie7 DNA MER1_type -1282 1330 848 321 182 23 23 chr15 23619176 23619308 -62076446 + (TA)n Simple_repeat Simple_repeat 2 133 0 593 233 6 43 chr15 23619328 23619491 -62076263 - L1MD2 LINE L1 -24 6335 6179 370 275 63 22 chr15 23619502 23619721 -62076033 - Charlie7 DNA MER1_type -1793 819 592 3030 138 67 52 chr15 23619721 23620337 -62075417 + MER51A LTR ERV1 1 625 -9 438 239 115 34 chr15 23620432 23620666 -62075088 - Charlie7 DNA MER1_type -2090 522 270 1999 103 0 8 chr15 23621094 23621356 -62074398 + AluSc SINE Alu 35 294 -15 276 77 0 0 chr15 23622591 23622630 -62073124 + (TATTG)n Simple_repeat Simple_repeat 1 39 0 411 278 19 43 chr15 23622676 23622838 -62072916 - MER63A DNA MER1_type -9 201 44 775 317 125 8 chr15 23623114 23623505 -62072249 - LTR33 LTR ERVL -84 437 1 760 271 19 5 chr15 23623879 23624086 -62071668 - MER63A DNA MER1_type 0 210 1 1786 168 12 40 chr15 23624326 23624653 -62071101 + MER34B LTR ERV1 14 331 -234 28 48 0 0 chr15 23625374 23625416 -62070338 + AT_rich Low_complexity Low_complexity 1 42 0 672 311 55 13 chr15 23625532 23625770 -62069984 + MIR SINE MIR 15 262 0 264 238 124 63 chr15 23625981 23626296 -62069458 + L1ME4a LINE L1 5788 6121 0 474 303 70 12 chr15 23626537 23626781 -62068973 - MIR SINE MIR -2 260 3 405 205 13 13 chr15 23627916 23627994 -62067760 - L3b LINE CR1 -262 1321 1244 242 320 0 31 chr15 23629405 23629533 -62066221 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 724 193 0 0 chr15 23629533 23629652 -62066102 + MER82 DNA MER2_type 1 119 -534 6917 60 8 0 chr15 23629654 23631334 -62064420 + L1PA7 LINE L1 4465 6154 0 3029 235 36 30 chr15 23631836 23632727 -62063027 - L1ME1 LINE L1 -4 6162 5267 261 0 0 0 chr15 23632837 23632866 -62062888 + (TA)n Simple_repeat Simple_repeat 1 29 0 1023 201 58 33 chr15 23632866 23633140 -62062614 - L1ME1 LINE L1 -894 5252 4972 715 166 424 37 chr15 23633142 23633462 -62062292 + MER31A LTR ERV1 3 198 -345 845 163 107 46 chr15 23633462 23633658 -62062096 - MER6B DNA MER2_type -1 209 2 715 166 424 37 chr15 23633658 23633717 -62062037 + MER31A LTR ERV1 198 543 0 1643 253 75 5 chr15 23633717 23634313 -62061441 - L1ME1 LINE L1 -1171 4975 4338 982 112 42 75 chr15 23634329 23634543 -62061211 - L1MA9 LINE L1 0 6312 6106 2139 166 46 69 chr15 23634552 23635071 -62060683 - L1MA9 LINE L1 -30 6282 5776 288 111 0 0 chr15 23635099 23635144 -62060610 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 147 0 0 chr15 23635146 23635180 -62060574 - Tigger1 DNA MER2_type 0 2418 2385 4088 211 86 24 chr15 23635195 23636309 -62059445 - L1 LINE L1 -1743 4403 3221 812 193 12 6 chr15 23636383 23636554 -62059200 - L1MD3 LINE L1 -2 7993 7822 357 209 0 0 chr15 23636566 23636633 -62059121 - Charlie2 DNA MER1_type -878 1984 1918 783 234 26 9 chr15 23636642 23636869 -62058885 - L1ME1 LINE L1 -1832 4314 4084 2419 209 32 18 chr15 23636989 23637678 -62058076 - L1M4 LINE L1 -388 5796 5093 957 209 114 74 chr15 23637678 23638056 -62057698 + MSTD LTR MaLR 3 395 -1 2419 209 32 18 chr15 23638056 23638234 -62057520 - L1M4 LINE L1 -1091 5093 4919 1393 229 74 26 chr15 23638234 23638855 -62056899 - L1M4 LINE L1 -2358 3788 3138 281 385 8 8 chr15 23638903 23639025 -62056729 - L2 LINE L2 -1 3271 3150 357 268 71 8 chr15 23639560 23639687 -62056067 - MIR SINE MIR 0 262 128 224 231 19 0 chr15 23639697 23639749 -62056005 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr15 23640525 23640561 -62055193 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 23641582 23641611 -62054143 + AT_rich Low_complexity Low_complexity 1 29 0 457 345 14 5 chr15 23644543 23644752 -62051002 + LTR37B LTR ERV1 6 216 -252 408 253 77 84 chr15 23644780 23645053 -62050701 + LTR37B LTR ERV1 196 466 -2 3009 192 61 0 chr15 23645724 23645860 -62049894 - L1PBb LINE L1 -5115 1089 963 2000 107 43 7 chr15 23645860 23646159 -62049595 - AluSg SINE Alu 0 310 1 3009 192 61 0 chr15 23646159 23646642 -62049112 - L1PBb LINE L1 -5241 963 432 2821 111 35 36 chr15 23646638 23647160 -62048594 + L1PB2 LINE L1 1760 2280 -4583 * 13098 180 28 23 chr15 23647156 23648259 -62047495 + L1PB2 LINE L1 2842 3937 -2930 2216 109 0 26 chr15 23648259 23648570 -62047184 + AluSg SINE Alu 3 305 -5 13098 180 28 23 chr15 23648570 23650080 -62045674 + L1PB2 LINE L1 3937 5437 -1430 2042 111 0 0 chr15 23650080 23650382 -62045372 + AluY SINE Alu 1 302 0 13098 180 28 23 chr15 23650382 23650833 -62044921 + L1PB2 LINE L1 5437 5884 -983 405 0 0 0 chr15 23650833 23650878 -62044876 + (TAA)n Simple_repeat Simple_repeat 2 46 0 13098 180 28 23 chr15 23650878 23651809 -62043945 + L1PB2 LINE L1 5884 6861 -6 265 275 99 75 chr15 23652988 23653229 -62042525 - MIR SINE MIR -6 256 22 228 255 87 106 chr15 23653808 23653969 -62041785 - MLT1J LTR MaLR -35 476 319 456 155 0 0 chr15 23654540 23654611 -62041143 - AluJ/FLAM SINE Alu -241 71 1 2469 29 7 23 chr15 23655377 23655685 -62040069 + AluY SINE Alu 1 303 -8 281 323 47 24 chr15 23656045 23656172 -62039582 + MIR SINE MIR 117 246 -16 7130 193 30 5 chr15 23656178 23658365 -62037389 + L1PA13 LINE L1 3922 6152 -11 2934 118 59 18 chr15 23659128 23659621 -62036133 - MER75 DNA T2_type 0 514 2 212 356 25 17 chr15 23660591 23660709 -62035045 + MIR SINE MIR 22 140 -68 498 239 34 0 chr15 23660827 23660944 -62034810 + MER45A DNA AcHobo 58 178 0 534 58 0 70 chr15 23661071 23661157 -62034597 - MADE1 DNA Mariner 0 80 1 221 219 97 70 chr15 23662569 23662683 -62033071 + L2 LINE L2 3197 3313 0 2073 120 3 3 chr15 23664371 23664663 -62031091 - AluSq SINE Alu -13 300 9 993 269 41 44 chr15 23664925 23665289 -62030465 + MLT1H1 LTR MaLR 1 363 -192 2451 73 0 0 chr15 23665613 23665915 -62029839 - AluY SINE Alu -9 302 1 2042 134 0 0 chr15 23667132 23667431 -62028323 + AluSx SINE Alu 13 311 -1 334 299 109 6 chr15 23667432 23667606 -62028148 + L1MCa LINE L1 1287 1478 -4948 265 263 50 0 chr15 23667630 23667710 -62028044 - L1MA7 LINE L1 -6 6285 6202 * 11003 185 54 44 chr15 23667708 23667942 -62027812 - L1MA6 LINE L1 -152 6148 5918 2046 142 41 19 chr15 23667942 23668309 -62027445 + THE1C LTR MaLR 1 375 0 11003 185 54 44 chr15 23668309 23671563 -62024191 - L1MA6 LINE L1 -382 5918 2697 186 71 0 0 chr15 23671563 23671591 -62024163 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1670 162 4 0 chr15 23671598 23671863 -62023891 - AluSx SINE Alu -46 266 1 11003 185 54 44 chr15 23671863 23672047 -62023707 - L1MA6 LINE L1 -3608 2692 2429 541 316 41 39 chr15 23672046 23672458 -62023296 + L1MCa LINE L1 1651 2063 -4544 * 220 183 21 0 chr15 23672518 23672611 -62023143 + (TA)n Simple_repeat Simple_repeat 2 96 0 600 278 56 44 chr15 23672624 23673103 -62022651 + L1MCa LINE L1 2098 2582 -4025 372 256 23 23 chr15 23673112 23673241 -62022513 + L1ME2 LINE L1 39 167 -6229 621 299 10 0 chr15 23673273 23673477 -62022277 + L1ME2 LINE L1 4184 4389 -1826 9212 223 38 19 chr15 23673481 23677401 -62018353 + L1M1 LINE L1 7 4749 -2816 435 255 174 11 chr15 23677368 23677844 -62017910 + L1ME2 LINE L1 6325 6886 -695 * 386 38 0 19 chr15 23677848 23677901 -62017853 + (TA)n Simple_repeat Simple_repeat 1 52 0 237 125 25 0 chr15 23677921 23677961 -62017793 - L1ME LINE L1 -387 5779 5739 599 270 133 42 chr15 23677966 23678229 -62017525 + L1ME2 LINE L1 5939 6225 -8 683 324 98 19 chr15 23678392 23679171 -62016583 + L1ME3A LINE L1 4556 5395 -751 723 252 20 28 chr15 23679189 23679439 -62016315 + L1ME3A LINE L1 5456 5703 -467 289 270 11 0 chr15 23679513 23679602 -62016152 + L1ME3A LINE L1 6076 6165 -5 1520 175 7 21 chr15 23680030 23680316 -62015438 - MLT1B LTR MaLR -108 282 1 305 311 61 15 chr15 23680827 23680959 -62014795 + MLT1L LTR MaLR 476 613 -2 320 310 36 84 chr15 23682267 23682576 -62013178 - LTR16A LTR ERVL -126 324 18 2032 334 60 40 chr15 23682728 23683296 -62012458 - MERVL LTR ERVL -444 5320 4765 2133 107 0 10 chr15 23683296 23683596 -62012158 + AluY SINE Alu 1 297 -14 2032 334 60 40 chr15 23683596 23684849 -62010905 - MERVL LTR ERVL -999 4765 3437 417 369 19 0 chr15 23684932 23685137 -62010617 - MERVL LTR ERVL -2205 3280 3100 2495 223 114 27 chr15 23686117 23686962 -62008792 - L1ME1 LINE L1 -8 6158 5230 3938 207 14 3 chr15 23686967 23687848 -62007906 + L1ME1 LINE L1 4355 5244 -902 200 254 18 0 chr15 23687848 23687903 -62007851 + (TA)n Simple_repeat Simple_repeat 2 57 0 5494 97 1 4 chr15 23687905 23688681 -62007073 + L1PB1 LINE L1 5378 6151 0 3632 259 75 50 chr15 23688690 23690570 -62005184 - L1ME1 LINE L1 -902 5244 3318 4938 184 34 41 chr15 23690774 23692152 -62003602 - L1MC1 LINE L1 -5 7123 5759 43454 41 5 3 chr15 23692185 23698328 -61997426 - L1PA4 LINE L1 0 6155 2 3648 230 51 30 chr15 23698338 23699531 -61996223 - L1MC1 LINE L1 -1199 5742 4525 2111 284 63 20 chr15 23699545 23700724 -61995030 - L1M3de LINE L1 -5461 1192 23 * 6098 185 57 46 chr15 23700721 23701297 -61994457 - L1MC1 LINE L1 -4941 2000 1431 405 0 0 0 chr15 23701297 23701342 -61994412 + (TG)n Simple_repeat Simple_repeat 2 46 0 6098 185 57 46 chr15 23701342 23702234 -61993520 - L1MC1 LINE L1 -5510 1431 517 1223 211 75 14 chr15 23702216 23702576 -61993178 - L1MCc LINE L1 -3104 3837 3456 * 1595 254 99 52 chr15 23702577 23704757 -61990997 - L1MCc LINE L1 -3584 3357 921 240 245 47 47 chr15 23705071 23705177 -61990577 - L1MC1 LINE L1 -6104 319 214 2080 90 18 0 chr15 23706533 23706836 -61988918 - AluSp SINE Alu 0 308 1 228 278 62 31 chr15 23707350 23707447 -61988307 + MIR SINE MIR 161 260 -2 2538 54 0 0 chr15 23707749 23708044 -61987710 - AluY SINE Alu -8 303 9 257 175 123 0 chr15 23708054 23708111 -61987643 + MER69 DNA AcHobo 2463 2526 0 213 291 325 0 chr15 23708129 23708246 -61987508 - MER5A DNA MER1_type -8 181 27 344 352 0 0 chr15 23708743 23708851 -61986903 - MIR3 SINE MIR -32 176 69 195 333 71 71 chr15 23710010 23710178 -61985576 + MIR3 SINE MIR 14 181 -27 1833 215 39 60 chr15 23710195 23710768 -61984986 - L1MC4 LINE L1 0 8042 7481 2429 130 8 16 chr15 23710768 23711146 -61984608 - THE1C LTR MaLR 0 375 1 1833 215 39 60 chr15 23711146 23711168 -61984586 - L1MC4 LINE L1 -561 7481 7460 327 287 74 9 chr15 23711441 23711549 -61984205 + LTR16B LTR ERVL 350 464 0 556 219 0 0 chr15 23713684 23713798 -61981956 + MER96B DNA MER1_type? 294 407 -10 258 250 0 0 chr15 23714036 23714092 -61981662 + (CA)n Simple_repeat Simple_repeat 2 57 0 20636 159 39 20 chr15 23714545 23717315 -61978439 - L1MA2 LINE L1 0 7723 5008 1866 156 117 25 chr15 23717315 23717707 -61978047 - MSTA LTR MaLR 0 428 1 20636 159 39 20 chr15 23717707 23718401 -61977353 - L1MA2 LINE L1 -2715 5008 4329 1327 48 0 0 chr15 23718401 23718562 -61977192 + L1PA4 LINE L1 5989 6154 -1 20636 159 39 20 chr15 23718562 23722693 -61973061 - L1MA2 LINE L1 -3394 4329 1 1395 186 64 7 chr15 23724179 23724475 -61971279 - L1MA5 LINE L1 -24 6276 5964 378 289 37 84 chr15 23726195 23726385 -61969369 + MER102b DNA MER1_type 146 326 -15 2282 90 0 3 chr15 23727898 23728188 -61967566 + AluSg SINE Alu 1 289 -21 364 140 9 47 chr15 23730054 23730161 -61965593 + GA-rich Low_complexity Low_complexity 2 104 0 807 133 0 0 chr15 23731290 23731403 -61964351 + AluSq/x SINE Alu 1 113 -199 425 105 0 0 chr15 23731403 23731489 -61964265 + Alu SINE Alu 227 312 0 180 235 71 102 chr15 23731720 23731818 -61963936 + L2 LINE L2 407 501 -2813 323 344 48 8 chr15 23731921 23732046 -61963708 + MIR SINE MIR 35 164 -98 790 253 0 0 chr15 23732864 23733026 -61962728 - MER58A DNA MER1_type -24 200 39 3431 211 31 37 chr15 23733028 23733859 -61961895 + L1MD2 LINE L1 5523 6348 -11 338 294 49 0 chr15 23735152 23735254 -61960500 - MLT1K LTR MaLR -113 475 369 1682 131 36 0 chr15 23735467 23735719 -61960035 - AluSx SINE Alu -13 299 39 348 345 73 12 chr15 23735722 23735887 -61959867 - MIR SINE MIR -70 192 18 1700 273 85 22 chr15 23736116 23736949 -61958805 + L1ME1 LINE L1 5254 6161 -5 725 274 0 52 chr15 23737040 23737252 -61958502 - MER63A DNA MER1_type -9 201 1 347 246 70 81 chr15 23737447 23737647 -61958107 + MIR3 SINE MIR 13 206 -43 388 325 82 53 chr15 23738436 23738777 -61956977 + L3 LINE CR1 809 1159 -418 576 284 18 0 chr15 23739972 23740141 -61955613 + HAL1 LINE L1 1590 1761 -746 314 272 24 48 chr15 23740264 23740389 -61955365 + MER119 DNA MER1_type 462 583 0 706 258 59 56 chr15 23740401 23740793 -61954961 + HAL1 LINE L1 1766 2158 -349 1491 66 0 10 chr15 23740812 23741008 -61954746 + L1P3 LINE L1 5576 5769 -385 1311 148 30 4 chr15 23741003 23741233 -61954521 - L1MA4A LINE L1 -101 6202 5967 * 1421 173 20 0 chr15 23741233 23741488 -61954266 - LOR1a LTR ERV1 0 497 238 717 181 20 20 chr15 23741474 23741623 -61954131 - LOR1b LTR ERV1 -276 185 37 * 1011 160 48 5 chr15 23741639 23741826 -61953928 - L1MA4A LINE L1 -333 5970 5776 281 169 12 85 chr15 23741857 23741952 -61953802 - L1P5 LINE L1 -361 5795 5709 594 48 48 0 chr15 23741952 23742035 -61953719 + L1PA7 LINE L1 6066 6152 -2 195 42 0 0 chr15 23742085 23742109 -61953645 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 281 134 18 chr15 23742111 23742275 -61953479 + HAL1 LINE L1 2239 2421 -86 31 44 0 0 chr15 23742353 23742398 -61953356 + AT_rich Low_complexity Low_complexity 1 45 0 8723 202 67 53 chr15 23742435 23744854 -61950900 - L1M2 LINE L1 -4261 2948 7 1005 261 146 23 chr15 23744886 23744955 -61950799 - L1MDb LINE L1 -4721 1685 1626 2107 177 53 7 chr15 23744955 23745368 -61950386 - MSTB1 LTR MaLR 0 432 1 1005 261 146 23 chr15 23745368 23746157 -61949597 - L1MDb LINE L1 -4780 1626 776 303 49 0 0 chr15 23746473 23746514 -61949240 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 184 147 18 chr15 23748270 23748379 -61947375 - MIR SINE MIR -95 167 45 415 300 198 26 chr15 23748384 23748687 -61947067 + L2 LINE L2 1803 2157 -1157 366 319 87 22 chr15 23748841 23749026 -61946728 - L2 LINE L2 0 3313 3117 5417 116 51 6 chr15 23749296 23751003 -61944751 - L1PA14 LINE L1 -3 6158 4397 1367 200 0 0 chr15 23751165 23751395 -61944359 + AluJb SINE Alu 1 230 -82 248 323 118 63 chr15 23752834 23753088 -61942666 - L2 LINE L2 0 3272 3005 377 212 44 18 chr15 23753375 23753488 -61942266 - MIR3 SINE MIR -9 199 84 4850 162 16 15 chr15 23754065 23754923 -61940831 + MER6 DNA MER2_type 4 862 -3 342 0 0 0 chr15 23754925 23754963 -61940791 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr15 23755725 23755747 -61940007 + AT_rich Low_complexity Low_complexity 1 22 0 1768 70 4 45 chr15 23755862 23756105 -61939649 - AluY SINE Alu -14 297 65 1676 177 159 5 chr15 23756127 23756499 -61939255 + MSTB1 LTR MaLR 4 432 0 324 0 0 0 chr15 23757318 23757354 -61938400 + (TG)n Simple_repeat Simple_repeat 2 37 0 345 82 0 0 chr15 23757392 23757441 -61938313 + (CACTA)n Simple_repeat Simple_repeat 2 50 0 2302 156 60 1 chr15 23757528 23758013 -61937741 - MER44D DNA MER2_type 0 605 9 1263 312 113 9 chr15 23758997 23759555 -61936199 + MLT2F LTR ERVL 48 663 0 183 276 92 13 chr15 23759734 23759810 -61935944 + MER5A DNA MER1_type 31 112 -77 213 312 26 26 chr15 23760780 23760857 -61934897 - L2 LINE L2 0 3313 3237 982 304 78 35 chr15 23761222 23761709 -61934045 + LTR33 LTR ERVL 12 519 -2 470 260 97 51 chr15 23761713 23761909 -61933845 - MIR SINE MIR -10 252 48 235 316 35 105 chr15 23764183 23764411 -61931343 + L1MEd LINE L1 447 658 -5461 2887 3 0 0 chr15 23764578 23764889 -61930865 + AluYa5 SINE Alu 1 311 0 366 23 0 0 chr15 23765107 23765150 -61930604 + (A)n Simple_repeat Simple_repeat 1 43 0 289 267 48 79 chr15 23765203 23765368 -61930386 + L1MDa LINE L1 303 462 -5910 2476 261 107 56 chr15 23765691 23766459 -61929295 - L1MCc LINE L1 -2159 4782 4054 306 106 0 0 chr15 23766459 23766506 -61929248 + (TG)n Simple_repeat Simple_repeat 2 48 0 2476 261 107 56 chr15 23766506 23766713 -61929041 - L1MCc LINE L1 -2887 4054 3859 2126 103 3 7 chr15 23766713 23767005 -61928749 - AluSc SINE Alu -18 291 1 2476 261 107 56 chr15 23767005 23768850 -61926904 - L1MCc LINE L1 -3082 3859 1852 7712 25 1 0 chr15 23768861 23770525 -61925229 - L1PA3 LINE L1 0 6155 4491 9073 63 0 6 chr15 23770525 23771681 -61924073 + L1P LINE L1 13 1161 -4985 1117 297 110 39 chr15 23771687 23772634 -61923120 - L1MCc LINE L1 -4888 1535 654 1270 305 78 4 chr15 23772733 23773192 -61922562 - L1MCc LINE L1 -5913 510 18 1459 307 19 15 chr15 23773202 23773733 -61922021 - HERV16 LTR ERVL -3725 1271 739 989 313 36 8 chr15 23773744 23774102 -61921652 - HERV16 LTR ERVL -4628 368 1 540 296 105 53 chr15 23774130 23774434 -61921320 - LTR16A LTR ERVL -50 400 81 265 248 77 2 chr15 23774493 23774609 -61921145 + L1MDa LINE L1 1400 1601 -4781 2110 133 3 0 chr15 23774871 23775173 -61920581 + AluSx SINE Alu 1 303 -9 465 303 12 19 chr15 23775196 23775358 -61920396 + HERV16 LTR ERVL 2019 2179 -2817 311 281 74 16 chr15 23775364 23775485 -61920269 + HERV16 LTR ERVL 2421 2548 -3106 1144 358 18 21 chr15 23775631 23776169 -61919585 + HERV16 LTR ERVL 2659 3232 -1924 394 310 10 0 chr15 23776264 23776364 -61919390 - HERV16 LTR ERVL -4858 138 38 375 259 122 7 chr15 23776447 23776594 -61919160 - LTR16A LTR ERVL -54 396 233 703 211 80 107 chr15 23779734 23780098 -61915656 - L1M4 LINE L1 -2064 4082 3729 396 268 125 68 chr15 23780235 23780604 -61915150 - HAL1 LINE L1 -714 1793 1404 5035 141 18 27 chr15 23780605 23782309 -61913445 + L1PA15 LINE L1 4236 5953 -212 2571 109 25 3 chr15 23782309 23782676 -61913078 + THE1C LTR MaLR 1 375 0 9158 127 36 46 chr15 23782676 23784271 -61911483 + THE1C-int LTR MaLR 1 1580 0 2542 120 11 3 chr15 23784273 23784641 -61911113 + THE1C LTR MaLR 3 373 -2 5035 141 18 27 chr15 23784641 23784852 -61910902 + L1PA15 LINE L1 5953 6146 -19 417 394 74 17 chr15 23785103 23785400 -61910354 - L2 LINE L2 -17 3255 2942 263 309 71 0 chr15 23785430 23785514 -61910240 - L2 LINE L2 -4 3309 3220 21 0 0 0 chr15 23785736 23785757 -61909997 + AT_rich Low_complexity Low_complexity 1 21 0 692 314 73 20 chr15 23786204 23786614 -61909140 - L1ME3A LINE L1 -302 5819 5406 337 253 101 31 chr15 23787294 23787551 -61908203 - L1ME3A LINE L1 -1542 4604 4330 1480 55 6 0 chr15 23787561 23787776 -61907978 - AluY SINE Alu 0 313 98 269 411 39 9 chr15 23787844 23788075 -61907679 - L2 LINE L2 -635 2679 2442 772 228 76 0 chr15 23789161 23789345 -61906409 - MER3 DNA MER1_type -9 200 3 23 0 0 0 chr15 23794335 23794358 -61901396 + AT_rich Low_complexity Low_complexity 1 23 0 514 250 23 8 chr15 23794469 23794601 -61901153 - MIR SINE MIR -42 220 87 270 302 67 13 chr15 23795188 23795337 -61900417 - L1ME LINE L1 -365 5756 5600 317 167 0 0 chr15 23795468 23795516 -61900238 + Tigger5 DNA MER2_type 1 48 -2275 280 129 257 0 chr15 23795529 23795599 -61900155 + Tigger5 DNA MER2_type 2234 2321 -2 21 0 0 0 chr15 23796398 23796419 -61899335 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr15 23796530 23796563 -61899191 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 23796895 23796917 -61898837 + (A)n Simple_repeat Simple_repeat 1 22 0 434 319 40 60 chr15 23797476 23797724 -61898030 - MIR SINE MIR -13 249 7 342 250 145 40 chr15 23797979 23798103 -61897651 + MIR SINE MIR 45 181 -81 241 291 204 19 chr15 23798272 23798478 -61897276 + L2 LINE L2 1793 2036 -1278 313 408 18 18 chr15 23798737 23799009 -61896745 + L2 LINE L2 2619 2890 -424 385 319 67 26 chr15 23799121 23799391 -61896363 + L2 LINE L2 3021 3301 -12 183 80 0 0 chr15 23799392 23799417 -61896337 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 342 66 40 chr15 23799456 23799608 -61896146 + L2 LINE L2 2060 2215 -1099 2264 107 0 0 chr15 23799905 23800204 -61895550 - AluSc SINE Alu -10 299 1 333 82 0 0 chr15 23803708 23803757 -61891997 + (TG)n Simple_repeat Simple_repeat 2 50 0 1047 270 42 44 chr15 23804030 23804437 -61891317 + LTR16A1 LTR ERVL 52 457 0 1142 272 40 45 chr15 23804466 23804937 -61890817 + Tigger8 DNA MER2_type 72 540 -126 758 298 48 17 chr15 23805256 23805551 -61890203 + LTR16B LTR ERVL 141 444 -20 297 314 66 16 chr15 23805820 23805941 -61889813 + MIR SINE MIR 81 207 -55 610 291 66 8 chr15 23806692 23806933 -61888821 + LTR16A LTR ERVL 191 445 -5 34 24 0 0 chr15 23807195 23807236 -61888518 + AT_rich Low_complexity Low_complexity 1 41 0 661 304 84 13 chr15 23808407 23808644 -61887110 - MIR SINE MIR -7 255 2 255 339 77 8 chr15 23808774 23808904 -61886850 + L2 LINE L2 3174 3312 -1 230 164 18 0 chr15 23809358 23809413 -61886341 + GA-rich Low_complexity Low_complexity 3 58 0 236 287 66 48 chr15 23809995 23810011 -61885743 + L1MDa LINE L1 1624 1638 -4902 180 0 0 0 chr15 23810011 23810031 -61885723 + (CAA)n Simple_repeat Simple_repeat 2 21 0 236 287 66 48 chr15 23810031 23810286 -61885468 + L1MDa LINE L1 1638 1900 -4640 1384 229 87 63 chr15 23810523 23811016 -61884738 - MLT1D LTR MaLR 0 505 1 1790 216 107 22 chr15 23811166 23811671 -61884083 + L1ME2 LINE L1 5560 6107 -57 26 64 0 0 chr15 23812601 23812648 -61883106 + AT_rich Low_complexity Low_complexity 1 47 0 396 0 0 0 chr15 23813986 23814030 -61881724 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 314 58 35 chr15 23814118 23814204 -61881550 - L2 LINE L2 -5 3267 3180 200 309 26 59 chr15 23815883 23816035 -61879719 - L2 LINE L2 -8 3305 3159 549 175 39 0 chr15 23816874 23816977 -61878777 + U6 snRNA snRNA 1 107 0 13780 200 45 5 chr15 23816977 23821187 -61874567 + L1MA5 LINE L1 2634 7001 -1 21 0 0 0 chr15 23821776 23821797 -61873957 + AT_rich Low_complexity Low_complexity 1 21 0 304 110 73 7 chr15 23822087 23822223 -61873531 + (TA)n Simple_repeat Simple_repeat 2 146 0 580 294 87 39 chr15 23824298 23824367 -61871387 - MIR SINE MIR -10 252 188 2169 120 0 0 chr15 23824367 23824668 -61871086 - AluSg SINE Alu -9 301 1 580 294 87 39 chr15 23824668 23824829 -61870925 - MIR SINE MIR -74 188 11 215 175 12 50 chr15 23824906 23824986 -61870768 + CT-rich Low_complexity Low_complexity 1 77 0 229 200 0 43 chr15 23825010 23825080 -61870674 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 227 9 18 chr15 23825624 23825734 -61870020 + CT-rich Low_complexity Low_complexity 4 112 0 21 36 0 0 chr15 23825776 23825804 -61869950 + AT_rich Low_complexity Low_complexity 1 28 0 2156 50 39 4 chr15 23827050 23827331 -61868423 - AluY SINE Alu -20 291 1 240 167 146 0 chr15 23827744 23827792 -61867962 - MLT1F1 LTR MaLR -200 367 313 334 226 30 24 chr15 23827889 23828048 -61867706 - MLT1F1 LTR MaLR -408 159 1 806 252 66 44 chr15 23828343 23828800 -61866954 + LTR56 LTR ERV1 9 437 0 353 244 47 79 chr15 23828968 23829095 -61866659 + MIR SINE MIR 21 143 -65 342 0 0 0 chr15 23829836 23829874 -61865880 + (T)n Simple_repeat Simple_repeat 1 38 0 408 342 26 35 chr15 23830576 23830804 -61864950 + Charlie2 DNA MER1_type 1 226 -2636 1221 220 70 108 chr15 23830936 23831771 -61863983 + Charlie2 DNA MER1_type 1975 2777 -85 460 354 34 5 chr15 23832763 23832969 -61862785 - LTR16A LTR ERVL -120 330 119 378 272 26 77 chr15 23833125 23833320 -61862434 - L2 LINE L2 -22 3291 3107 194 128 26 0 chr15 23834464 23834503 -61861251 + GA-rich Low_complexity Low_complexity 2 41 0 1875 160 3 6 chr15 23834971 23835283 -61860471 - AluY SINE Alu 0 311 1 3315 141 21 9 chr15 23835421 23835981 -61859773 - L1PB4 LINE L1 -3 6153 5587 780 286 107 72 chr15 23836326 23836365 -61859389 + L1ME3A LINE L1 3276 3312 -2834 2541 90 95 5 chr15 23836365 23836776 -61858978 + LTR7 LTR ERV1 1 448 -2 780 286 107 72 chr15 23836776 23837134 -61858620 + L1ME3A LINE L1 3312 3656 -2490 3060 136 35 35 chr15 23837134 23837729 -61858025 + LTR49 LTR ERV1 1 595 0 780 286 107 72 chr15 23837729 23838224 -61857530 + L1ME3A LINE L1 3656 4218 -1928 3923 95 0 28 chr15 23838224 23838790 -61856964 + MER41A LTR ERV1 5 554 0 780 286 107 72 chr15 23838790 23838998 -61856756 + L1ME3A LINE L1 4218 4417 -1729 643 259 175 14 chr15 23838993 23839279 -61856475 + L1ME3A LINE L1 5553 5884 -286 * 3735 150 65 12 chr15 23839281 23839336 -61856418 + MER50 LTR ERV1 1 52 -682 234 105 0 0 chr15 23839336 23839374 -61856380 + (CA)n Simple_repeat Simple_repeat 2 39 0 3735 150 65 12 chr15 23839374 23839993 -61855761 + MER50 LTR ERV1 52 711 -23 488 231 70 13 chr15 23840052 23840208 -61855546 + L1ME3A LINE L1 6001 6165 -5 380 253 100 20 chr15 23840328 23840478 -61855276 + L1ME3A LINE L1 4602 4763 -1383 1247 199 4 0 chr15 23840496 23840722 -61855032 - AluJb SINE Alu -16 296 70 183 100 0 0 chr15 23840750 23840780 -61854974 + (AATAG)n Simple_repeat Simple_repeat 1 30 0 1565 277 74 29 chr15 23840871 23841808 -61853946 + L1ME3A LINE L1 4973 5948 -222 237 65 0 0 chr15 23843293 23843324 -61852430 + (T)n Simple_repeat Simple_repeat 1 31 0 649 215 98 29 chr15 23844100 23844346 -61851408 + L1MB7 LINE L1 4301 4563 -1583 907 242 85 30 chr15 23844346 23844782 -61850972 - MLT1D LTR MaLR 0 467 12 3211 207 65 15 chr15 23844793 23846169 -61849585 + L1MB7 LINE L1 4563 6000 -184 349 221 189 0 chr15 23846170 23846265 -61849489 - MLT1D LTR MaLR -76 429 317 611 153 5 54 chr15 23846268 23846405 -61849349 + L1MB7 LINE L1 6014 6146 -32 1069 257 89 24 chr15 23846739 23846903 -61848851 + MLT1A2 LTR MaLR 4 156 -218 432 0 0 0 chr15 23846903 23846951 -61848803 + (TG)n Simple_repeat Simple_repeat 2 49 0 1069 257 89 24 chr15 23846951 23847124 -61848630 + MLT1A2 LTR MaLR 156 363 -11 461 298 37 52 chr15 23847900 23848108 -61847646 + MIR SINE MIR 40 243 -19 198 270 27 32 chr15 23848801 23848935 -61846819 - MER5A DNA MER1_type -6 183 1 22 35 0 0 chr15 23850019 23850048 -61845706 + AT_rich Low_complexity Low_complexity 1 29 0 404 322 7 0 chr15 23850160 23850309 -61845445 + CT-rich Low_complexity Low_complexity 4 153 0 1482 214 54 5 chr15 23851045 23851414 -61844340 - MER110A LTR ERV1 -2 466 80 236 303 26 0 chr15 23853694 23853770 -61841984 - MIR3 SINE MIR -6 202 125 261 256 23 124 chr15 23854186 23854315 -61841439 + MER5A DNA MER1_type 73 188 -1 574 249 56 60 chr15 23854899 23855184 -61840570 - L1ME2 LINE L1 -9 6155 5872 32 0 0 0 chr15 23855305 23855337 -61840417 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 23855651 23855672 -61840082 + AT_rich Low_complexity Low_complexity 1 21 0 1906 193 39 28 chr15 23855928 23856362 -61839392 - L1MD1 LINE L1 0 6242 5812 21 36 0 0 chr15 23856510 23856538 -61839216 + AT_rich Low_complexity Low_complexity 1 28 0 815 315 68 73 chr15 23857813 23858375 -61837379 + L1M3b LINE L1 697 1255 -5026 2077 159 69 15 chr15 23859588 23859996 -61835758 + MSTB1 LTR MaLR 3 432 0 344 232 32 21 chr15 23860057 23860152 -61835602 - MLT1L LTR MaLR -12 603 508 2056 103 24 14 chr15 23860602 23860893 -61834861 + AluY SINE Alu 1 294 -17 2160 165 44 0 chr15 23861572 23861984 -61833770 + L1MD1 LINE L1 5367 5796 -446 1217 180 54 7 chr15 23861985 23862278 -61833476 + MLT1A1 LTR MaLR 1 365 0 2009 184 27 18 chr15 23862278 23862718 -61833036 + L1MD1 LINE L1 5793 6236 -6 21 0 0 0 chr15 23863382 23863403 -61832351 + AT_rich Low_complexity Low_complexity 1 21 0 625 280 27 31 chr15 23863412 23863669 -61832085 - L1ME3A LINE L1 -11 6159 5904 198 374 50 31 chr15 23864121 23864343 -61831411 + L2 LINE L2 2836 3061 -211 227 311 33 74 chr15 23864964 23865086 -61830668 + MIR SINE MIR 118 234 -28 367 321 50 7 chr15 23865727 23865867 -61829887 - L2 LINE L2 0 3313 3168 441 187 45 24 chr15 23866155 23866294 -61829460 - MLT1E1 LTR MaLR 0 654 367 485 213 57 41 chr15 23866353 23866543 -61829211 - MLT1E1 LTR MaLR -396 258 11 368 337 10 0 chr15 23866648 23866749 -61829005 + MIR SINE MIR 13 114 -148 2323 80 10 0 chr15 23866889 23867190 -61828564 - AluY SINE Alu -7 304 1 25 0 0 0 chr15 23868190 23868215 -61827539 + AT_rich Low_complexity Low_complexity 1 25 0 290 296 102 51 chr15 23869002 23869198 -61826556 + MIR3 SINE MIR 2 207 -1 297 343 119 34 chr15 23869361 23869688 -61826066 + L2 LINE L2 2929 3283 -30 243 0 0 0 chr15 23869706 23869733 -61826021 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1366 151 81 13 chr15 23870030 23870309 -61825445 - MLT1D LTR MaLR -1 504 221 280 158 24 134 chr15 23870321 23870403 -61825351 - MLT1D LTR MaLR -430 75 3 247 331 166 0 chr15 23870574 23870737 -61825017 - MIR SINE MIR -60 202 13 615 288 56 4 chr15 23871369 23871619 -61824135 - LTR37B LTR ERV1 0 468 206 452 138 277 46 chr15 23871683 23871813 -61823941 - MER20 DNA MER1_type -4 215 56 423 212 102 66 chr15 23871815 23871952 -61823802 + FLAM_A SINE Alu 1 142 0 949 168 37 94 chr15 23872386 23872630 -61823124 - L1PA16 LINE L1 -9 6157 5928 * 1278 129 41 153 chr15 23872627 23872968 -61822786 + L1P LINE L1 3644 3946 -2200 927 266 79 13 chr15 23873200 23873516 -61822238 - MER46C DNA MER2_type 0 338 2 386 291 141 10 chr15 23873533 23873739 -61822015 - MIR SINE MIR 0 262 30 563 224 43 6 chr15 23874498 23874659 -61821095 - L1M4 LINE L1 -3832 2314 2148 * 634 175 138 78 chr15 23874656 23874873 -61820881 - L1MB7 LINE L1 0 6682 6453 2228 221 68 10 chr15 23874876 23875966 -61819788 - L1MB7 LINE L1 -329 6353 5203 572 242 26 9 chr15 23875966 23876201 -61819553 - 7SK RNA RNA 0 193 1 1126 219 33 25 chr15 23876201 23876566 -61819188 - L1MB7 LINE L1 -1426 5218 4851 2003 276 76 18 chr15 23876579 23878451 -61817303 - L1MB7 LINE L1 -3650 2994 886 * 4067 226 29 48 chr15 23878445 23880020 -61815734 - L1MD1 LINE L1 -68 6672 5131 1131 265 66 23 chr15 23880061 23880623 -61815131 - L1MD1 LINE L1 -5057 1577 893 326 206 68 14 chr15 23880701 23880774 -61814980 - L1MD1 LINE L1 -5671 871 795 310 364 36 27 chr15 23881143 23881363 -61814391 - L1MD1 LINE L1 -6304 238 17 2035 233 43 9 chr15 23881458 23881991 -61813763 - L1MB7 LINE L1 -16 6168 5618 472 328 20 10 chr15 23881992 23882196 -61813558 - L1MEc LINE L1 -5789 607 402 1463 223 17 3 chr15 23882230 23882576 -61813178 + MER6 DNA MER2_type 505 855 -10 1227 203 43 16 chr15 23882587 23883019 -61812735 - L1 LINE L1 -3693 2657 2211 3547 272 46 31 chr15 23883447 23886033 -61809721 - L1 LINE L1 -4157 2194 4 282 167 185 0 chr15 23887498 23887552 -61808202 - HERVL68 LTR ERVL -190 5340 5277 405 268 73 65 chr15 23887808 23888054 -61807700 - HERVL68 LTR ERVL -329 2708 2461 689 296 57 31 chr15 23889245 23889596 -61806158 - LTR16B LTR ERVL 0 464 105 207 340 123 0 chr15 23889828 23889934 -61805820 + MIR3 SINE MIR 14 132 -76 269 238 16 0 chr15 23890421 23890484 -61805270 + MLT1K LTR MaLR 511 574 -14 2124 136 0 0 chr15 23891565 23891867 -61803887 + AluSq SINE Alu 1 302 -11 34 65 0 0 chr15 23892568 23892630 -61803124 + AT_rich Low_complexity Low_complexity 1 62 0 230 296 115 12 chr15 23892749 23892992 -61802762 - L1ME4a LINE L1 -186 5935 5668 611 319 85 17 chr15 23895092 23895619 -61800135 + HAL1b LINE L1 279 841 -507 5957 104 11 18 chr15 23895889 23896943 -61798811 + L1P3 LINE L1 923 1952 -4509 2598 61 302 16 chr15 23897077 23897517 -61798237 - L1P LINE L1 -5088 1058 493 * 7528 32 0 0 chr15 23897502 23898419 -61797335 + L1P LINE L1 1539 2455 -3691 10663 111 13 1 chr15 23898563 23900215 -61795539 + L1P3 LINE L1 1913 3584 -2877 782 74 0 0 chr15 23900212 23900320 -61795434 - L1P LINE L1 -4780 1366 1259 * 14623 96 4 4 chr15 23900420 23902583 -61793171 + L1PA2 LINE L1 2548 4711 -1435 7311 23 1 0 chr15 23902688 23903837 -61791917 + L1PA2 LINE L1 4997 6152 -3 2705 98 2 2 chr15 23903852 23904249 -61791505 + L1P3 LINE L1 3567 3963 -2498 4453 64 24 0 chr15 23904249 23904820 -61790934 + L1PA7 LINE L1 5556 6148 -6 371 305 106 16 chr15 23904834 23905276 -61790478 - L1ME4a LINE L1 -294 5827 5332 1531 233 65 27 chr15 23905503 23905949 -61789805 - L1MCa LINE L1 -5959 467 5 1718 185 82 23 chr15 23906969 23907007 -61788747 - MLT2B1 LTR ERVL -5 515 481 309 51 0 0 chr15 23907007 23907046 -61788708 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1718 185 82 23 chr15 23907046 23907446 -61788308 - MLT2B1 LTR ERVL -39 481 1 283 335 28 51 chr15 23907727 23907903 -61787851 - L2 LINE L2 -210 3062 2891 238 284 15 0 chr15 23907974 23908041 -61787713 - L2 LINE L2 -1020 2294 2227 481 248 43 98 chr15 23908138 23908372 -61787382 + MER102a DNA MER1_type 78 298 -32 23 33 0 0 chr15 23908704 23908734 -61787020 + AT_rich Low_complexity Low_complexity 1 30 0 772 201 17 11 chr15 23908973 23909147 -61786607 - L1MC3 LINE L1 -8 7777 7603 21 36 0 0 chr15 23909147 23909175 -61786579 + AT_rich Low_complexity Low_complexity 1 28 0 1834 114 70 84 chr15 23909298 23909667 -61786087 - THE1B LTR MaLR 0 364 1 9334 118 14 18 chr15 23909667 23911278 -61784476 - THE1B-int LTR MaLR 0 1651 87 244 155 113 0 chr15 23911734 23911805 -61783949 - L1MCa LINE L1 -3900 2528 2450 340 221 158 11 chr15 23911826 23911921 -61783833 - L1MCa LINE L1 -4022 2404 2296 435 19 0 0 chr15 23913780 23913832 -61781922 + (CA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr15 23913831 23913854 -61781900 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 203 241 155 0 chr15 23914519 23914577 -61781177 + MIR SINE MIR 75 141 -121 315 312 65 40 chr15 23914797 23914996 -61780758 - MIR SINE MIR -9 253 50 1845 90 0 12 chr15 23916705 23916960 -61778794 - PABL_B LTR ERV1 -2 665 414 1985 226 46 20 chr15 23917101 23917640 -61778114 - L1P LINE L1 -2130 4016 3464 4251 196 20 14 chr15 23917655 23918608 -61777146 + L1 LINE L1 4025 4983 -1163 236 221 156 0 chr15 23919215 23919292 -61776462 + MIR SINE MIR 122 210 -52 545 246 129 12 chr15 23919433 23919775 -61775979 - L1MDb LINE L1 -2718 4239 3858 449 259 101 50 chr15 23919770 23920466 -61775288 - L1MDb LINE L1 -4916 2043 1206 * 375 60 0 0 chr15 23921470 23921520 -61774234 + (TG)n Simple_repeat Simple_repeat 2 51 0 369 109 0 0 chr15 23922451 23922506 -61773248 + (CA)n Simple_repeat Simple_repeat 1 55 0 342 315 11 0 chr15 23922648 23922740 -61773014 + MIR SINE MIR 30 122 -140 333 296 127 26 chr15 23922860 23923049 -61772705 + LTR16C LTR ERVL 277 484 -7 857 320 42 46 chr15 23923051 23923725 -61772029 - ERVL LTR ERVL -3211 2482 1761 216 0 0 0 chr15 23924071 23924095 -61771659 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 23924768 23924790 -61770964 + AT_rich Low_complexity Low_complexity 1 22 0 826 198 31 47 chr15 23926639 23926831 -61768923 + MER5A DNA MER1_type 1 189 0 2165 101 7 10 chr15 23928022 23928330 -61767424 - AluY SINE Alu -2 309 3 23 54 0 0 chr15 23928844 23928881 -61766873 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr15 23930205 23930235 -61765519 + AT_rich Low_complexity Low_complexity 1 30 0 341 287 37 7 chr15 23930341 23930477 -61765277 + L1MEd LINE L1 1258 1397 -5019 405 284 156 24 chr15 23930514 23930725 -61765029 + L1MEd LINE L1 1278 1516 -4910 348 299 84 37 chr15 23930944 23931158 -61764596 - L1ME2 LINE L1 -224 5940 5717 3820 105 19 8 chr15 23931188 23931778 -61763976 + L1MA1 LINE L1 5707 6302 0 23 92 0 0 chr15 23931778 23931843 -61763911 + AT_rich Low_complexity Low_complexity 1 65 0 323 336 129 13 chr15 23931858 23932239 -61763515 - L1ME2 LINE L1 -1542 4604 4180 270 318 40 11 chr15 23932370 23932546 -61763208 - L1ME2 LINE L1 -2153 3993 3813 609 295 141 59 chr15 23932563 23933740 -61762014 - L1ME2 LINE L1 -2381 3765 2430 268 289 106 19 chr15 23934473 23934577 -61761177 + L2 LINE L2 3197 3309 -4 607 70 0 20 chr15 23935384 23935484 -61760270 + (CATA)n Simple_repeat Simple_repeat 2 99 0 654 203 0 0 chr15 23936534 23936652 -61759102 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr15 23936652 23936688 -61759066 + AT_rich Low_complexity Low_complexity 1 36 0 201 139 0 0 chr15 23937941 23937984 -61757770 + (GA)n Simple_repeat Simple_repeat 2 44 0 13096 75 15 4 chr15 23939624 23941864 -61753890 + L1P1 LINE L1 3519 5782 -373 3616 136 2 10 chr15 23942094 23942690 -61753064 + L1PA3 LINE L1 5562 6152 -3 1807 276 93 33 chr15 23942690 23944756 -61750998 + L1MEc LINE L1 1055 3210 -3005 5609 149 36 16 chr15 23944926 23945957 -61749797 - THE1-int LTR MaLR -94 1486 435 1925 182 88 16 chr15 23946072 23946506 -61749248 - MER4E-int LTR ERV1 -106 6652 6188 5689 130 157 6 chr15 23946506 23947559 -61748195 + MER11B LTR ERVK 1 1212 -24 2271 139 79 23 chr15 23947702 23948423 -61747331 - MER4E-int LTR ERV1 -1455 5303 4452 * 3607 152 57 11 chr15 23948422 23949041 -61746713 - MER4E-int LTR ERV1 -2670 4088 3442 5471 126 109 29 chr15 23949058 23950683 -61745071 - MER4E-int LTR ERV1 -4088 2670 1444 4821 138 65 13 chr15 23950694 23951764 -61743990 - MER4E-int LTR ERV1 -5578 1180 1 5024 86 29 25 chr15 23951769 23952527 -61743227 - MER4E LTR ERV1 -5 761 1 1773 206 68 36 chr15 23952583 23952953 -61742801 - MER67D LTR ERV1 0 514 157 396 40 0 0 chr15 23952953 23953003 -61742751 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 888 101 0 0 chr15 23953009 23953138 -61742616 - L1PA13 LINE L1 -7 6156 6028 1773 206 68 36 chr15 23953138 23953256 -61742498 - MER67D LTR ERV1 -361 153 3 236 324 135 11 chr15 23955912 23956097 -61739657 + MIR SINE MIR 23 230 -32 423 168 47 28 chr15 23956872 23956979 -61738775 - MER5A DNA MER1_type -77 112 4 2453 149 16 10 chr15 23957049 23957560 -61738194 - LTR9 LTR ERV1 0 612 1 217 290 0 0 chr15 23957560 23957622 -61738132 + L2 LINE L2 3249 3310 -3 990 323 33 11 chr15 23958935 23959384 -61736370 + LTR16B LTR ERVL 5 463 -1 272 319 123 43 chr15 23959945 23960108 -61735646 + LTR67 LTR ERVL 2 177 -380 516 250 66 31 chr15 23962535 23962731 -61733023 - MLT1C LTR MaLR -153 314 112 1975 107 0 28 chr15 23963462 23963778 -61731976 + AluSg SINE Alu 1 308 0 275 245 43 0 chr15 23963855 23963949 -61731805 + (TA)n Simple_repeat Simple_repeat 2 99 0 339 384 67 27 chr15 23964582 23964913 -61730841 + L1MDa LINE L1 6 349 -6191 632 258 70 85 chr15 23965449 23966035 -61729719 + L1MDa LINE L1 916 1492 -5051 5845 217 60 64 chr15 23966136 23972093 -61723661 + L1MA4 LINE L1 312 5979 -503 2454 77 0 0 chr15 23972093 23972404 -61723350 + AluY SINE Alu 1 311 0 5845 217 60 64 chr15 23972404 23972901 -61722853 + L1MA4 LINE L1 5979 6476 -6 1189 252 52 43 chr15 23973295 23973377 -61722377 + L1MDa LINE L1 1565 1645 -4895 2274 161 14 48 chr15 23973377 23973818 -61721936 + MSTB LTR MaLR 1 426 0 1189 252 52 43 chr15 23973818 23974295 -61721459 + L1MDa LINE L1 1645 2129 -4411 364 89 0 36 chr15 23974329 23974385 -61721369 + MADE1 DNA Mariner 3 56 -24 391 235 55 84 chr15 23974407 23974645 -61721109 + L1MDa LINE L1 2334 2564 -3976 343 282 40 101 chr15 23974645 23975021 -61720733 - L1MCc LINE L1 -6047 376 24 26 30 0 0 chr15 23975094 23975127 -61720627 + AT_rich Low_complexity Low_complexity 1 33 0 1405 171 146 36 chr15 23975269 23975625 -61720129 + LTR52 LTR ERVL 1 395 -26 518 338 112 33 chr15 23975900 23976383 -61719371 - LTR33 LTR ERVL 0 521 1 26 0 0 0 chr15 23976880 23976906 -61718848 + AT_rich Low_complexity Low_complexity 1 26 0 724 179 7 0 chr15 23978034 23978174 -61717580 - L1 LINE L1 -2122 4024 3884 3893 170 29 22 chr15 23978290 23979331 -61716423 + L1PA16 LINE L1 4975 6017 -149 329 339 0 39 chr15 23979418 23979545 -61716209 + MER5A DNA MER1_type 44 165 -24 26 30 0 0 chr15 23979750 23979783 -61715971 + AT_rich Low_complexity Low_complexity 1 33 0 952 220 6 0 chr15 23979919 23980096 -61715658 - MER45A DNA AcHobo 0 178 1 34 19 0 19 chr15 23980646 23980679 -61715075 + AT_rich Low_complexity Low_complexity 1 34 -17 2062 113 0 3 chr15 23980679 23980963 -61714791 - AluSg SINE Alu -27 283 1 34 19 0 19 chr15 23980963 23980981 -61714773 + AT_rich Low_complexity Low_complexity 34 51 0 689 37 0 0 chr15 23981167 23981248 -61714506 - PABL_B LTR ERV1 -586 81 1 182 356 0 35 chr15 23981368 23981420 -61714334 + MIR SINE MIR 46 94 -168 476 274 192 0 chr15 23981420 23981566 -61714188 - MER5A DNA MER1_type -1 188 15 5271 85 14 13 chr15 23983636 23984401 -61711353 - MER4E LTR ERV1 0 766 1 252 0 0 0 chr15 23984684 23984712 -61711042 + (A)n Simple_repeat Simple_repeat 1 28 0 3982 202 40 12 chr15 23985298 23986411 -61709343 - L1MA5 LINE L1 -267 7054 5880 1634 159 83 26 chr15 23986411 23986762 -61708992 - THE1C LTR MaLR 0 375 5 3982 202 40 12 chr15 23986762 23987242 -61708512 - L1MA5 LINE L1 -1441 5880 5415 * 9190 201 85 50 chr15 23987225 23990138 -61705616 - L1MA5 LINE L1 -4111 3057 16 586 219 110 0 chr15 23990507 23990662 -61705092 - LTR16C LTR ERVL 0 491 320 211 191 0 0 chr15 23991027 23991069 -61704685 + CT-rich Low_complexity Low_complexity 1 42 0 243 275 12 123 chr15 23991069 23991240 -61704514 - MIR SINE MIR -2 260 109 21 0 0 0 chr15 23991359 23991380 -61704374 + AT_rich Low_complexity Low_complexity 1 21 0 241 303 66 66 chr15 23991453 23991605 -61704149 + MIR SINE MIR 17 168 -94 185 292 21 0 chr15 23993300 23993348 -61702406 + L2 LINE L2 3218 3266 -6 22 0 0 0 chr15 23993464 23993486 -61702268 + AT_rich Low_complexity Low_complexity 1 22 0 33 73 0 0 chr15 23993921 23993989 -61701765 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr15 23995318 23995340 -61700414 + AT_rich Low_complexity Low_complexity 1 22 0 509 253 0 11 chr15 23997079 23997174 -61698580 + MER81 DNA DNA 1 94 -20 346 340 194 9 chr15 23997229 23997461 -61698293 + L2 LINE L2 2513 2787 -527 1017 297 88 17 chr15 23997547 23998240 -61697514 - L2 LINE L2 0 3313 2562 223 317 25 67 chr15 23998411 23998531 -61697223 + L2 LINE L2 3035 3149 -123 190 200 0 22 chr15 23998602 23998647 -61697107 + L2 LINE L2 3269 3312 -1 247 238 150 0 chr15 23998751 23998831 -61696923 - L2 LINE L2 0 3313 3222 214 259 0 108 chr15 23999732 23999832 -61695922 + MIR SINE MIR 2 93 -115 296 294 77 35 chr15 24000808 24000951 -61694803 + MIR SINE MIR 66 214 -48 1546 146 119 26 chr15 24003092 24003435 -61692319 + THE1C LTR MaLR 1 375 0 1081 188 22 5 chr15 24003440 24003664 -61692090 + THE1C-int LTR MaLR 6 233 -1347 423 244 94 33 chr15 24003666 24003846 -61691908 + THE1B LTR MaLR 161 351 -13 332 298 11 11 chr15 24004521 24004615 -61691139 - MER5A DNA MER1_type -95 94 1 21 89 0 0 chr15 24005131 24005187 -61690567 + AT_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr15 24006118 24006144 -61689610 + AT_rich Low_complexity Low_complexity 1 26 0 233 253 179 11 chr15 24006157 24006252 -61689502 - MIR SINE MIR 0 262 152 361 291 121 6 chr15 24006291 24006456 -61689298 - MIR SINE MIR -77 185 2 248 325 24 8 chr15 24006463 24006586 -61689168 + Charlie8 DNA MER1_type 109 233 -2184 229 347 48 16 chr15 24006926 24007050 -61688704 + MIR SINE MIR 2 129 -133 22 0 0 0 chr15 24008385 24008407 -61687347 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 24008517 24008562 -61687192 + AT_rich Low_complexity Low_complexity 1 45 0 335 216 97 30 chr15 24009362 24009496 -61686258 - MLT1H1 LTR MaLR -60 530 388 465 264 78 56 chr15 24009498 24009729 -61686025 - MLT1H1 LTR MaLR -313 242 7 563 309 53 0 chr15 24009826 24010014 -61685740 - LTR16A LTR ERVL 0 450 253 370 209 47 0 chr15 24010133 24010219 -61685535 + THE1B LTR MaLR 304 393 -3 * 574 179 9 27 chr15 24010219 24010327 -61685427 - MLT1E2 LTR MaLR -513 113 8 478 291 128 6 chr15 24010390 24010569 -61685185 + L2 LINE L2 3113 3313 0 557 209 22 22 chr15 24010774 24010908 -61684846 - AluJo SINE Alu -178 134 1 25 0 0 0 chr15 24011724 24011749 -61684005 + AT_rich Low_complexity Low_complexity 1 25 0 610 257 32 46 chr15 24011912 24012192 -61683562 + L1M4 LINE L1 4822 5097 -1049 21 0 0 0 chr15 24012616 24012637 -61683117 + AT_rich Low_complexity Low_complexity 1 21 0 317 24 24 0 chr15 24013115 24013157 -61682597 + (CA)n Simple_repeat Simple_repeat 1 43 0 308 246 34 42 chr15 24013179 24013297 -61682457 + L1M4 LINE L1 1591 1707 -4835 674 212 75 35 chr15 24013352 24013578 -61682176 + L1M4 LINE L1 4294 4528 -2116 560 257 73 5 chr15 24013617 24013823 -61681931 + L1ME1 LINE L1 3608 3827 -2319 2607 247 78 17 chr15 24013834 24015705 -61680049 + L1ME1 LINE L1 4085 6151 -15 221 159 45 0 chr15 24015716 24015760 -61679994 + A-rich Low_complexity Low_complexity 6 51 0 255 246 0 0 chr15 24016152 24016209 -61679545 + MER103 DNA DNA 42 98 -68 423 329 13 13 chr15 24016321 24016476 -61679278 - MLT1J2 LTR MaLR -291 159 5 260 250 31 52 chr15 24016846 24016942 -61678812 - MIR SINE MIR -56 206 113 193 402 12 30 chr15 24017432 24017601 -61678153 - L2 LINE L2 -290 2982 2817 4677 246 59 39 chr15 24018085 24019494 -61676260 + L1M4 LINE L1 15 1395 -5251 2086 121 13 0 chr15 24019494 24019808 -61675946 + L1PA10 LINE L1 5848 6165 -3 4677 246 59 39 chr15 24019808 24020366 -61675388 + L1M4 LINE L1 1395 2031 -4615 7724 92 5 14 chr15 24020366 24021447 -61674307 - MER11C LTR ERVK 0 1071 1 4677 246 59 39 chr15 24021447 24021502 -61674252 + L1M4 LINE L1 2031 2083 -4563 1485 86 34 10 chr15 24021613 24021822 -61673932 + LTR66 LTR ERVL 1 214 -396 227 301 9 0 chr15 24021879 24021992 -61673762 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 228 286 11 22 chr15 24021992 24022083 -61673671 - L1MC4 LINE L1 -1339 6703 6614 228 279 47 0 chr15 24022027 24022113 -61673641 + L1MC4 LINE L1 6614 6703 -1339 285 217 43 14 chr15 24022161 24022230 -61673524 + MER7A DNA MER2_type 3 73 -275 195 184 0 0 chr15 24022230 24022268 -61673486 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 177 16 0 chr15 24022326 24022388 -61673366 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 2124 167 9 0 chr15 24022389 24022731 -61673023 + MER7A DNA MER2_type 3 345 -1 1831 241 64 73 chr15 24022935 24023355 -61672399 + L1M4 LINE L1 2684 3095 -3549 2300 53 3 66 chr15 24023355 24023673 -61672081 - AluY SINE Alu -13 298 1 1831 241 64 73 chr15 24023673 24024092 -61671662 + L1M4 LINE L1 3095 3516 -3128 1234 206 73 24 chr15 24024125 24024494 -61671260 - L1 LINE L1 -1547 4599 4213 1316 126 23 0 chr15 24024496 24024710 -61671044 + L1PB4 LINE L1 5931 6149 -7 6390 228 64 34 chr15 24024734 24027056 -61668698 + L1M4 LINE L1 3535 5946 -726 257 282 56 0 chr15 24027176 24027247 -61668507 + MER91C DNA MER1_type 34 108 -32 360 321 34 63 chr15 24028400 24028637 -61667117 + MIR SINE MIR 28 257 -5 630 291 65 0 chr15 24028919 24029118 -61666636 + MIR SINE MIR 10 221 -41 23 68 0 0 chr15 24029325 24029369 -61666385 + AT_rich Low_complexity Low_complexity 1 44 0 1424 226 49 133 chr15 24029555 24029902 -61665852 + L1ME1 LINE L1 4076 4451 -1695 38 0 0 0 chr15 24029902 24029940 -61665814 + AT_rich Low_complexity Low_complexity 1 38 0 1424 226 49 133 chr15 24029940 24030561 -61665193 + L1ME1 LINE L1 4451 4996 -1150 625 254 31 36 chr15 24030568 24030807 -61664947 + L1ME1 LINE L1 5942 6163 -1 33 0 0 0 chr15 24031533 24031566 -61664188 + AT_rich Low_complexity Low_complexity 1 33 0 5496 164 20 21 chr15 24031998 24033371 -61662383 - L1P5 LINE L1 -381 5775 4398 189 0 0 0 chr15 24033371 24033392 -61662362 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5496 164 20 21 chr15 24033392 24033639 -61662115 - L1P5 LINE L1 -1758 4398 4152 573 139 0 30 chr15 24034900 24035001 -61660753 + MER4A LTR ERV1 1 98 -566 1655 146 26 22 chr15 24035001 24035343 -61660411 + MER4A LTR ERV1 263 664 0 262 242 32 0 chr15 24035517 24035579 -61660175 + MIR SINE MIR 87 150 -112 3640 166 71 38 chr15 24035586 24036385 -61659369 - LTR1B LTR ERV1 0 826 1 408 293 54 7 chr15 24036532 24036679 -61659075 + L2 LINE L2 3160 3313 0 240 373 16 8 chr15 24036992 24037118 -61658636 - L2 LINE L2 -842 2472 2346 383 272 84 47 chr15 24037136 24037349 -61658405 - MIR SINE MIR -11 251 31 4245 197 18 6 chr15 24037874 24038781 -61656973 - L1 LINE L1 -1997 4149 3232 5627 185 21 40 chr15 24038809 24039666 -61656088 - L1MC1 LINE L1 -1 6332 5460 2254 106 0 0 chr15 24039666 24039959 -61655795 - AluSc SINE Alu -16 293 1 5627 185 21 40 chr15 24039959 24040515 -61655239 - L1MC1 LINE L1 -873 5460 4943 195 42 0 0 chr15 24040515 24040539 -61655215 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5627 185 21 40 chr15 24040539 24040829 -61654925 - L1MC1 LINE L1 -1390 4943 4649 1539 228 94 59 chr15 24040821 24041053 -61654701 - L1M4 LINE L1 -1299 4847 4624 * 1619 222 3 0 chr15 24041053 24041359 -61654395 + AluJo SINE Alu 5 311 -1 1539 228 94 59 chr15 24041359 24041820 -61653934 - L1M4 LINE L1 -1522 4624 4130 48 93 0 0 chr15 24042334 24042473 -61653281 + AT_rich Low_complexity Low_complexity 1 139 0 333 207 62 41 chr15 24042641 24042786 -61652968 - L1MC5 LINE L1 -227 7734 7587 507 234 7 26 chr15 24042977 24043131 -61652623 - L1M4 LINE L1 -3136 3010 2860 23 78 0 0 chr15 24043135 24043186 -61652568 + AT_rich Low_complexity Low_complexity 1 51 0 324 329 54 7 chr15 24043298 24043447 -61652307 - L1MC1 LINE L1 -2143 4003 3848 214 255 7 114 chr15 24043513 24043662 -61652092 - L2 LINE L2 -1235 2079 1947 2045 157 45 0 chr15 24044593 24044925 -61650829 - MER7A DNA MER2_type -1 345 1 23 54 0 0 chr15 24045199 24045236 -61650518 + AT_rich Low_complexity Low_complexity 1 37 0 548 291 80 25 chr15 24047572 24047809 -61647945 - MIR SINE MIR -3 259 10 1035 249 58 34 chr15 24049338 24049719 -61646035 + MLT1B LTR MaLR 1 390 0 302 327 97 22 chr15 24050727 24050953 -61644801 + L2 LINE L2 2621 2863 -451 1993 175 48 0 chr15 24051010 24051381 -61644373 + MLT1B LTR MaLR 2 390 0 1594 189 5 65 chr15 24051403 24051789 -61643965 + MLT1A1 LTR MaLR 1 363 -2 549 275 85 64 chr15 24051967 24052412 -61643342 + MLT1J LTR MaLR 38 594 -21 1363 198 189 28 chr15 24052477 24052912 -61642842 - MLT1D LTR MaLR 0 505 1 440 323 173 19 chr15 24053723 24054036 -61641718 - L3 LINE CR1 -100 1477 1117 23 0 0 0 chr15 24054241 24054264 -61641490 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr15 24054291 24054328 -61641426 + AT_rich Low_complexity Low_complexity 1 37 0 203 162 0 0 chr15 24054825 24054862 -61640892 + A-rich Low_complexity Low_complexity 3 39 0 12596 125 20 1 chr15 24055000 24057411 -61638343 - L1PA8A LINE L1 -13 6118 3667 396 0 0 0 chr15 24057411 24057455 -61638299 + (TG)n Simple_repeat Simple_repeat 2 45 0 12596 125 20 1 chr15 24057455 24057780 -61637974 - L1PA8A LINE L1 -2464 3667 3349 5939 145 0 11 chr15 24057781 24058794 -61636960 + L1P LINE L1 1786 2787 -3359 7400 181 19 15 chr15 24058940 24061277 -61634477 + L1MA9 LINE L1 3775 6121 -191 210 36 107 0 chr15 24061277 24061333 -61634421 + (TA)n Simple_repeat Simple_repeat 1 62 0 1777 161 0 7 chr15 24061333 24061606 -61634148 - AluSx SINE Alu -41 271 1 1453 89 27 0 chr15 24061607 24061832 -61633922 + L1MA9 LINE L1 6082 6312 0 794 321 25 19 chr15 24064699 24065017 -61630737 - LTR16A LTR ERVL -84 366 47 285 193 96 36 chr15 24065030 24065113 -61630641 + LTR16C LTR ERVL 393 480 -11 328 259 80 85 chr15 24065202 24065426 -61630328 + MIR SINE MIR 13 235 -27 319 305 50 13 chr15 24065599 24065723 -61630031 + MIR SINE MIR 31 157 -65 275 182 18 0 chr15 24065774 24065829 -61629925 - L2 LINE L2 -2 3311 3256 3817 115 53 76 chr15 24065874 24066677 -61629077 + LTR1 LTR ERV1 1 785 0 683 272 6 6 chr15 24067012 24067185 -61628569 + MIR SINE MIR 80 252 -10 556 227 80 0 chr15 24067952 24068102 -61627652 - MIR SINE MIR -4 258 97 401 296 49 31 chr15 24068257 24068419 -61627335 + L2 LINE L2 3148 3312 -1 227 221 15 15 chr15 24068600 24068668 -61627086 - L1MD3 LINE L1 -5 7990 7923 478 270 139 36 chr15 24068688 24069106 -61626648 - L1ME4a LINE L1 -21 6100 5640 42 0 0 0 chr15 24069111 24069153 -61626601 + AT_rich Low_complexity Low_complexity 1 42 0 905 272 98 88 chr15 24070496 24071215 -61624539 + L1MEc LINE L1 30 740 -5656 1864 114 7 4 chr15 24071215 24071496 -61624258 + AluSx SINE Alu 1 282 -30 905 272 98 88 chr15 24071496 24071638 -61624116 + L1MEc LINE L1 740 879 -5517 2261 97 7 3 chr15 24071638 24071948 -61623806 + AluSp SINE Alu 3 313 0 905 272 98 88 chr15 24071948 24072162 -61623592 + L1MEc LINE L1 879 1117 -5279 443 279 7 7 chr15 24072154 24072294 -61623460 + L1M4 LINE L1 3791 3930 -2216 * 538 250 156 5 chr15 24072490 24072682 -61623072 + LTR33 LTR ERVL 54 274 -247 263 247 86 0 chr15 24072737 24072818 -61622936 + LTR33 LTR ERVL 434 521 0 1603 126 59 30 chr15 24073499 24073796 -61621958 - AluSg SINE Alu 0 307 3 644 155 14 106 chr15 24074923 24075130 -61620624 + MER53 DNA DNA 1 188 -1 844 357 59 28 chr15 24076024 24076781 -61618973 + ERVL LTR ERVL 4544 5324 -440 21 0 0 0 chr15 24077324 24077345 -61618409 + AT_rich Low_complexity Low_complexity 1 21 0 1100 289 43 102 chr15 24077347 24078180 -61617574 + L2 LINE L2 2498 3275 -38 757 227 160 14 chr15 24080179 24080461 -61615293 - L1ME3 LINE L1 -224 5938 5616 370 294 8 8 chr15 24080467 24080593 -61615161 + L1ME2 LINE L1 6026 6151 -13 524 316 37 64 chr15 24081703 24081934 -61613820 - MER102a DNA MER1_type -1111 306 96 1214 167 14 5 chr15 24081934 24082150 -61613604 - L1PA15 LINE L1 -3 6162 5945 524 316 37 64 chr15 24082150 24082244 -61613510 - MER102a DNA MER1_type -1321 96 1 2574 141 84 26 chr15 24082269 24082723 -61613031 - LTR12 LTR ERV1 -234 480 1 1412 326 101 32 chr15 24083524 24083865 -61611889 + L2 LINE L2 1322 1638 -1676 2579 17 0 7 chr15 24083865 24084158 -61611596 + AluYa5 SINE Alu 16 306 -5 1412 326 101 32 chr15 24084158 24084731 -61611023 + L2 LINE L2 1638 2299 -1015 1052 298 14 26 chr15 24084732 24085152 -61610602 + L1ME3A LINE L1 5560 5974 -196 5761 151 26 18 chr15 24085165 24087032 -61608722 + L1MA2 LINE L1 4220 6099 -205 2126 102 40 3 chr15 24087032 24087352 -61608402 + L1MA2 LINE L1 5968 6304 0 21 36 0 0 chr15 24087352 24087380 -61608374 + AT_rich Low_complexity Low_complexity 1 28 0 2107 57 42 7 chr15 24087974 24088257 -61607497 - AluY SINE Alu -18 293 1 334 237 34 42 chr15 24088369 24088487 -61607267 - L1M4 LINE L1 -2507 3639 3523 317 307 126 47 chr15 24088508 24088762 -61606992 + L1MC/D LINE L1 3422 3695 -2451 266 267 78 17 chr15 24088769 24088885 -61606869 + L1MC/D LINE L1 3705 3827 -2319 24 0 0 0 chr15 24088885 24088909 -61606845 + AT_rich Low_complexity Low_complexity 1 24 0 206 179 0 60 chr15 24089021 24089088 -61606666 + (TATAA)n Simple_repeat Simple_repeat 3 65 0 744 310 120 57 chr15 24089088 24089794 -61605960 + L1MC/D LINE L1 4092 4842 -1304 235 343 0 0 chr15 24089820 24089890 -61605864 + L1MC/D LINE L1 5476 5545 -2263 276 329 46 7 chr15 24090032 24090184 -61605570 + L1MC/D LINE L1 5724 5881 -1927 22 56 0 0 chr15 24090231 24090267 -61605487 + AT_rich Low_complexity Low_complexity 1 36 0 545 217 0 91 chr15 24090298 24090441 -61605313 - FLAM_A SINE Alu 0 133 4 1850 195 9 12 chr15 24092084 24092427 -61603327 + MER7A DNA MER2_type 7 346 0 3030 241 35 48 chr15 24092713 24093615 -61602139 + L1M4 LINE L1 2 892 -5650 2890 162 27 73 chr15 24093622 24094250 -61601504 + LTR9 LTR ERV1 14 612 0 1697 265 58 65 chr15 24094250 24094387 -61601367 + L1M4 LINE L1 1096 1232 -5414 2091 141 118 8 chr15 24094387 24094769 -61600985 + MSTA LTR MaLR 5 428 0 1697 265 58 65 chr15 24094769 24095449 -61600305 + L1M4 LINE L1 1232 1909 -4737 1271 179 151 0 chr15 24095449 24095700 -61600054 + AluJb SINE Alu 1 289 -13 1697 265 58 65 chr15 24095700 24095826 -61599928 + L1M4 LINE L1 1909 2034 -4612 * 4614 167 52 19 chr15 24095821 24096308 -61599446 + L1MA4 LINE L1 5305 5774 -526 411 21 0 0 chr15 24096308 24096356 -61599398 + (TA)n Simple_repeat Simple_repeat 1 48 0 207 0 0 0 chr15 24096355 24096378 -61599376 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 4614 167 52 19 chr15 24096356 24096852 -61598902 + L1MA4 LINE L1 5774 6298 -2 1439 252 35 25 chr15 24096867 24097718 -61598036 + L1M4 LINE L1 2200 3011 -3633 11495 214 36 26 chr15 24097718 24099190 -61596564 + L1PA16 LINE L1 2721 4177 -2692 372 22 0 0 chr15 24099190 24099235 -61596519 + (CA)n Simple_repeat Simple_repeat 2 46 0 11495 214 36 26 chr15 24099235 24101856 -61593898 + L1PA16 LINE L1 4177 6869 0 4501 252 43 31 chr15 24101852 24103486 -61592268 + L1M4 LINE L1 2997 4655 -1989 * 2350 97 0 0 chr15 24103486 24103794 -61591960 + AluSc SINE Alu 1 308 -1 4501 252 43 31 chr15 24103794 24103915 -61591839 + L1M4 LINE L1 4655 4773 -1871 1868 241 65 20 chr15 24103895 24104607 -61591147 + L1M4 LINE L1 5233 5978 -686 * 7297 186 33 11 chr15 24104580 24105172 -61590582 + L1P5 LINE L1 4150 4728 -1921 1949 123 3 7 chr15 24105172 24105485 -61590269 + AluSq SINE Alu 1 312 0 7297 186 33 11 chr15 24105485 24106758 -61588996 + L1P5 LINE L1 4728 6050 -599 259 264 71 47 chr15 24106892 24107214 -61588540 - L1MEc LINE L1 -5061 1335 1006 1236 214 10 75 chr15 24107476 24107771 -61587983 - MSTD LTR MaLR 0 396 121 252 0 0 0 chr15 24107806 24107834 -61587920 + (TA)n Simple_repeat Simple_repeat 2 29 0 3157 67 0 7 chr15 24107910 24108313 -61587441 - MLT2A1 LTR ERVL -44 400 1 512 133 296 0 chr15 24108313 24108410 -61587344 - MSTD LTR MaLR -270 126 1 6322 249 25 38 chr15 24108410 24110166 -61585588 - MSTD-int LTR MaLR 0 1735 2 197 33 33 0 chr15 24110216 24110246 -61585508 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2044 135 22 19 chr15 24110246 24110608 -61585146 - L1PB1 LINE L1 -7 6144 5782 298 101 0 63 chr15 24110625 24110704 -61585050 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 305 143 0 0 chr15 24110704 24110760 -61584994 + L1P5 LINE L1 5782 5837 -314 283 103 0 0 chr15 24110800 24110839 -61584915 + L1P5 LINE L1 5737 5775 -376 288 0 0 0 chr15 24110843 24110875 -61584879 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr15 24111072 24111094 -61584660 + AT_rich Low_complexity Low_complexity 1 22 0 288 306 103 29 chr15 24111174 24111658 -61584096 + L1ME3A LINE L1 4766 5285 -861 308 307 64 49 chr15 24111664 24111928 -61583826 + L1ME3A LINE L1 5315 5582 -580 2024 190 53 18 chr15 24111941 24112442 -61583312 + MER44D DNA MER2_type 1 605 0 666 313 42 0 chr15 24112471 24112778 -61582976 + L1ME3A LINE L1 5628 5947 -223 24 53 0 0 chr15 24112976 24113014 -61582740 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr15 24113785 24113806 -61581948 + AT_rich Low_complexity Low_complexity 1 21 0 696 243 97 69 chr15 24114169 24114637 -61581117 - MLT1H1 LTR MaLR -14 535 1 204 250 0 0 chr15 24114786 24114826 -61580928 - MIR SINE MIR -3 259 220 339 151 79 167 chr15 24114847 24114973 -61580781 - MER53 DNA DNA -71 118 4 300 314 129 22 chr15 24114979 24115250 -61580504 + HAL1b LINE L1 591 890 -458 549 68 14 0 chr15 24115267 24115341 -61580413 - MADE1 DNA Mariner -5 75 1 287 263 53 38 chr15 24115492 24115625 -61580129 - LTR33 LTR ERVL -2 519 385 557 312 18 24 chr15 24115743 24115913 -61579841 - LTR33 LTR ERVL -344 177 9 613 295 139 34 chr15 24116214 24116675 -61579079 + L1MEc LINE L1 1381 1792 -4604 315 85 0 0 chr15 24116675 24116722 -61579032 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 613 295 139 34 chr15 24116722 24117081 -61578673 + L1MEc LINE L1 1792 2287 -4109 338 252 44 71 chr15 24117099 24117325 -61578429 + L1MEc LINE L1 2316 2535 -3680 362 231 0 0 chr15 24117439 24117517 -61578237 + L1MEc LINE L1 2709 2786 -3429 378 0 0 0 chr15 24117602 24117649 -61578105 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 378 0 0 0 chr15 24117649 24117691 -61578063 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 288 0 0 0 chr15 24117732 24117764 -61577990 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 222 16 0 chr15 24117805 24117868 -61577886 - AluJ/FRAM SINE Alu -9 293 230 5462 121 15 10 chr15 24117882 24118812 -61576942 - L1PA13 LINE L1 0 6163 5203 6446 177 5 47 chr15 24118817 24119505 -61576249 + L1P LINE L1 3819 4469 -1677 267 89 22 0 chr15 24119505 24119550 -61576204 + MADE1 DNA Mariner 1 46 -34 6446 177 5 47 chr15 24119550 24120176 -61575578 + L1P LINE L1 4469 5120 -1026 19310 85 27 2 chr15 24120181 24122752 -61573002 + HERVL-A2 LTR ERVL 3019 5654 0 2304 152 55 19 chr15 24122752 24123268 -61572486 + MLT2A2 LTR ERVL 1 554 0 273 111 0 0 chr15 24123268 24123313 -61572441 + L1P LINE L1 5116 5160 -986 * 1131 290 93 55 chr15 24123305 24124572 -61571182 + L1MEc LINE L1 2929 4244 -1971 22 70 0 0 chr15 24124873 24124916 -61570838 + AT_rich Low_complexity Low_complexity 1 43 0 25489 141 13 23 chr15 24124950 24130159 -61565595 - L1PA8A LINE L1 0 6446 1248 189 74 0 0 chr15 24130159 24130186 -61565568 + (TTG)n Simple_repeat Simple_repeat 1 27 0 25489 141 13 23 chr15 24130186 24131422 -61564332 - L1PA8A LINE L1 -5198 1248 1 29 28 0 0 chr15 24132056 24132092 -61563662 + AT_rich Low_complexity Low_complexity 1 36 0 7918 15 0 1 chr15 24132125 24133359 -61562395 - L1HS LINE L1 0 6155 4923 3465 27 14 0 chr15 24133344 24133758 -61561996 + L1P LINE L1 4552 4971 -1175 * 1986 129 7 24 chr15 24133819 24134114 -61561640 - AluSx SINE Alu -20 292 3 814 198 20 10 chr15 24134526 24134723 -61561031 - L1MD1 LINE L1 0 6242 6044 290 205 0 26 chr15 24134749 24134827 -61560927 - L1MD1 LINE L1 -123 6119 6044 * 295 205 0 26 chr15 24134801 24134879 -61560875 - L1MD1 LINE L1 -123 6119 6044 281 205 0 26 chr15 24134905 24134983 -61560771 - L1MD1 LINE L1 -123 6119 6044 * 2203 224 25 22 chr15 24134957 24135041 -61560713 - L1MD1 LINE L1 -123 6119 6037 1613 154 37 7 chr15 24135041 24135313 -61560441 - AluJo SINE Alu -19 293 14 2203 224 25 22 chr15 24135313 24135753 -61560001 - L1MD1 LINE L1 -205 6037 5590 7458 35 0 0 chr15 24135753 24137140 -61558614 - L1PA4 LINE L1 -5 6150 4764 2203 224 25 22 chr15 24137140 24137168 -61558586 - L1MD1 LINE L1 -652 5590 5564 902 257 45 7 chr15 24137153 24137441 -61558313 - L1MD1 LINE L1 -2300 3846 3548 * 822 250 43 31 chr15 24137473 24137862 -61557892 - PABL_B LTR ERV1 -1 666 263 655 92 0 146 chr15 24137873 24138003 -61557751 - LTR19C LTR ERV1 -354 425 315 257 235 0 0 chr15 24138074 24138125 -61557629 - PABL_B LTR ERV1 -616 51 1 400 246 66 70 chr15 24138126 24138581 -61557173 - L1MD1 LINE L1 -2617 3529 3077 * 6906 196 81 5 chr15 24138549 24139991 -61555763 - L1 LINE L1 -997 5149 3201 7703 98 8 4 chr15 24139991 24141907 -61553847 - L1PA8 LINE L1 0 6172 4237 6906 196 81 5 chr15 24141907 24142508 -61553246 - L1 LINE L1 -2945 3201 2647 10613 172 12 5 chr15 24142522 24144262 -61551492 - L1 LINE L1 -5573 1992 241 24 32 0 0 chr15 24144630 24144661 -61551093 + AT_rich Low_complexity Low_complexity 1 31 0 1057 202 15 4 chr15 24144681 24144953 -61550801 - L1P LINE L1 -762 5384 5110 * 4053 127 19 0 chr15 24144951 24145573 -61550181 + L1PB1 LINE L1 5467 6100 -51 253 281 98 0 chr15 24146222 24146304 -61549450 - MIR SINE MIR -110 152 63 801 221 55 0 chr15 24146364 24146563 -61549191 + MLT2B2 LTR ERVL 1 210 -305 354 263 93 17 chr15 24146714 24146832 -61548922 + MIR SINE MIR 15 141 -121 1245 198 73 27 chr15 24147075 24147403 -61548351 - MER2 DNA MER2_type -1 343 1 1888 180 14 6 chr15 24147828 24148172 -61547582 + MER7A DNA MER2_type 2 346 0 501 62 0 0 chr15 24148500 24148565 -61547189 + (TA)n Simple_repeat Simple_repeat 2 66 0 5650 121 29 9 chr15 24148609 24149623 -61546131 - L1PB1 LINE L1 -2 6149 5118 23 0 0 0 chr15 24149906 24149929 -61545825 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 24149946 24149978 -61545776 + AT_rich Low_complexity Low_complexity 1 32 0 205 167 0 69 chr15 24150207 24150279 -61545475 + T-rich Low_complexity Low_complexity 6 72 0 23 54 0 0 chr15 24150512 24150549 -61545205 + AT_rich Low_complexity Low_complexity 1 37 0 332 339 36 0 chr15 24151062 24151174 -61544580 + L2 LINE L2 3142 3257 -15 225 241 109 40 chr15 24151317 24151491 -61544263 - L1M4 LINE L1 -1593 4553 4368 25 31 0 0 chr15 24151521 24151553 -61544201 + AT_rich Low_complexity Low_complexity 1 32 0 619 288 128 31 chr15 24151947 24152360 -61543394 + L1MCc LINE L1 17 469 -5954 * 1053 304 27 33 chr15 24152356 24152721 -61543033 + L1M3a LINE L1 33 395 -5560 307 342 32 26 chr15 24152817 24152972 -61542782 + L1M3a LINE L1 549 704 -5251 2487 270 50 43 chr15 24153016 24153996 -61541758 + L1M2 LINE L1 302 1274 -4760 2230 110 0 3 chr15 24153996 24154295 -61541459 + AluSq SINE Alu 2 299 -14 2487 270 50 43 chr15 24154295 24154838 -61540916 + L1M2 LINE L1 1274 1812 -4222 2339 79 0 55 chr15 24154838 24155166 -61540588 + AluY SINE Alu 1 310 -1 2487 270 50 43 chr15 24155166 24156488 -61539266 + L1M2 LINE L1 1812 2875 -3159 2025 202 25 36 chr15 24156510 24156956 -61538798 + MSTB2 LTR MaLR 17 457 0 5212 203 32 5 chr15 24156956 24158263 -61537491 + L1M2 LINE L1 2888 4229 -1805 3276 21 0 0 chr15 24158258 24158633 -61537121 - L1P2 LINE L1 -375 5779 5405 * 3975 202 42 19 chr15 24158657 24159315 -61536439 + L1M2 LINE L1 4217 4858 -1321 2217 123 0 0 chr15 24159315 24159616 -61536138 + AluSx SINE Alu 1 301 -11 3975 202 42 19 chr15 24159616 24160064 -61535690 + L1M2 LINE L1 4858 5294 -885 189 0 0 0 chr15 24160064 24160085 -61535669 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2022 135 0 0 chr15 24160086 24160398 -61535356 + AluSx SINE Alu 1 312 0 3975 202 42 19 chr15 24160398 24160689 -61535065 + L1M2 LINE L1 5293 5651 -528 866 339 28 10 chr15 24160706 24161104 -61534650 + L1PA12 LINE L1 10 414 -7167 12443 242 34 24 chr15 24161742 24162263 -61533491 + L1PA12 LINE L1 2182 2696 -4888 1973 127 0 24 chr15 24162263 24162589 -61533165 + AluSq SINE Alu 1 319 0 12443 242 34 24 chr15 24162589 24166393 -61529361 + L1PA12 LINE L1 2696 6573 -1011 201 94 0 0 chr15 24166393 24166425 -61529329 + (CAA)n Simple_repeat Simple_repeat 1 32 0 12443 242 34 24 chr15 24166425 24166548 -61529206 + L1PA12 LINE L1 6573 6693 -891 3236 188 27 15 chr15 24166560 24167728 -61528026 - L1MA9 LINE L1 -365 5947 4768 2201 175 42 5 chr15 24167714 24168148 -61527606 + L1MC1 LINE L1 5258 5707 -626 * 1811 146 52 9 chr15 24168148 24168475 -61527279 + L1MC1 LINE L1 5992 6333 0 332 284 18 18 chr15 24168482 24168591 -61527163 - MER5A DNA MER1_type -77 112 4 296 0 51 0 chr15 24169153 24169192 -61526562 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1980 124 7 3 chr15 24169196 24169478 -61526276 - AluSx SINE Alu -29 283 1 196 118 20 20 chr15 24170818 24170869 -61524885 + (TA)n Simple_repeat Simple_repeat 2 52 0 2294 107 0 0 chr15 24172116 24172415 -61523339 - AluSx SINE Alu -13 299 1 247 367 41 30 chr15 24172974 24173143 -61522611 + MIR SINE MIR 76 246 -16 441 290 126 19 chr15 24174072 24174279 -61521475 + MIR SINE MIR 34 262 0 204 40 0 0 chr15 24174285 24174310 -61521444 + (ATG)n Simple_repeat Simple_repeat 2 26 0 640 85 54 16 chr15 24174737 24174866 -61520888 + CT-rich Low_complexity Low_complexity 3 136 0 4648 154 21 24 chr15 24175905 24176324 -61519430 - L1MA9 LINE L1 -74 6238 5820 2385 100 0 3 chr15 24176324 24176635 -61519119 - AluSg SINE Alu 0 310 1 4648 154 21 24 chr15 24176635 24177102 -61518652 - L1MA9 LINE L1 -492 5820 5354 201 372 37 61 chr15 24177523 24177687 -61518067 - MER91A DNA MER1_type -36 160 1 2284 107 3 0 chr15 24178039 24178339 -61517415 + AluSp SINE Alu 4 304 -9 296 167 69 0 chr15 24178343 24178415 -61517339 + L1ME2 LINE L1 5728 5804 -358 2612 120 63 18 chr15 24178416 24178858 -61516896 + MER4B LTR ERV1 1 462 -148 2418 151 31 5 chr15 24178858 24179281 -61516473 - MER57B LTR ERV1 0 434 1 1667 77 113 12 chr15 24179281 24179528 -61516226 - MER57B-int LTR ERV1 0 7537 7266 558 200 26 0 chr15 24179530 24179645 -61516109 - LTR54B LTR ERV1 -378 120 3 2128 131 48 12 chr15 24179646 24179982 -61515772 - MER57-int LTR ERV1 -388 7149 6802 * 4050 144 41 6 chr15 24179956 24180635 -61515119 - MER57-int LTR ERV1 -3823 3714 3012 274 98 0 0 chr15 24180635 24180676 -61515078 - MER57-int LTR ERV1 -4628 2909 2869 1085 236 25 14 chr15 24180736 24181020 -61514734 + L1ME2 LINE L1 5798 6084 -80 180 0 0 0 chr15 24181061 24181081 -61514673 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 272 306 0 0 chr15 24181586 24181648 -61514106 - LTR33 LTR ERVL -153 368 307 237 103 0 0 chr15 24182080 24182119 -61513635 + MADE1 DNA Mariner 42 80 0 731 316 135 28 chr15 24182400 24182944 -61512810 - L2 LINE L2 -168 3145 2530 229 276 79 39 chr15 24183094 24183221 -61512533 + MIR SINE MIR 77 208 -54 32 0 0 0 chr15 24184495 24184527 -61511227 + AT_rich Low_complexity Low_complexity 1 32 0 2675 233 75 19 chr15 24184527 24185327 -61510427 + L1ME1 LINE L1 5316 6160 -6 247 237 0 0 chr15 24185327 24185386 -61510368 + L1ME1 LINE L1 6101 6159 -7 451 299 55 39 chr15 24185411 24185899 -61509855 + L1ME3A LINE L1 3352 3847 -2299 438 225 56 94 chr15 24185894 24185988 -61509766 + L1MC4 LINE L1 7759 7855 -187 * 2041 134 76 17 chr15 24185988 24186332 -61509422 - THE1B LTR MaLR 0 364 1 438 225 56 94 chr15 24186332 24186504 -61509250 + L1MC4 LINE L1 7855 8015 -27 873 297 92 13 chr15 24186694 24187441 -61508313 + L1ME3A LINE L1 4012 4817 -1329 1421 282 119 28 chr15 24187447 24188576 -61507178 + L1ME3A LINE L1 4931 6170 0 22 35 0 0 chr15 24189616 24189645 -61506109 + AT_rich Low_complexity Low_complexity 1 29 0 198 263 26 66 chr15 24189674 24189750 -61506004 + L2 LINE L2 511 583 -2731 338 279 76 63 chr15 24189981 24190218 -61505536 - L1 LINE L1 -3692 2454 2215 416 319 92 35 chr15 24190284 24190685 -61505069 - LTR33 LTR ERVL -67 454 31 1805 314 34 11 chr15 24191568 24192179 -61503575 - ERVL LTR ERVL -1084 4680 4056 465 324 51 12 chr15 24192233 24192829 -61502925 - ERVL LTR ERVL -2171 3593 2882 791 118 22 37 chr15 24192886 24193021 -61502733 + FLAM_C SINE Alu 1 133 0 611 312 36 25 chr15 24193058 24193486 -61502268 - LTR33 LTR ERVL -57 464 1 21 0 0 0 chr15 24195661 24195682 -61500072 + AT_rich Low_complexity Low_complexity 1 21 0 613 328 98 25 chr15 24195961 24196357 -61499397 + L3 LINE CR1 1152 1576 -1 358 300 55 82 chr15 24196446 24196666 -61499088 + MIR SINE MIR 3 216 -46 330 345 70 48 chr15 24197135 24198126 -61497628 + L1MEc LINE L1 22 1033 -5363 * 510 316 26 16 chr15 24198117 24198427 -61497327 + L1MEc LINE L1 1445 1757 -4639 * 811 136 44 2 chr15 24198401 24198557 -61497197 - L1P LINE L1 -2033 4113 3938 321 216 10 39 chr15 24199059 24199161 -61496593 + L1ME2 LINE L1 5710 5808 -356 814 236 93 23 chr15 24199177 24199435 -61496319 + L1ME2 LINE L1 5888 6163 -1 1807 238 47 60 chr15 24199678 24200312 -61495442 + MLT1E2 LTR MaLR 1 626 0 1346 158 132 35 chr15 24200442 24200784 -61494970 - THE1C LTR MaLR 0 375 1 391 335 158 5 chr15 24202342 24202545 -61493209 - MIR SINE MIR -4 258 25 1057 209 20 43 chr15 24202790 24203044 -61492710 + MER96B DNA MER1_type? 1 248 -169 21 0 0 0 chr15 24203318 24203339 -61492415 + AT_rich Low_complexity Low_complexity 1 21 0 338 399 33 0 chr15 24203986 24204199 -61491555 + HAL1b LINE L1 714 933 -415 1633 164 48 56 chr15 24204789 24204970 -61490784 + THE1C LTR MaLR 1 182 -193 1868 140 7 4 chr15 24204970 24205299 -61490455 + AluSx SINE Alu 7 336 0 1633 164 48 56 chr15 24205299 24205494 -61490260 + THE1C LTR MaLR 182 375 0 1456 158 0 4 chr15 24205581 24205821 -61489933 - Tigger5 DNA MER2_type 0 2323 2085 363 191 0 16 chr15 24205842 24205905 -61489849 - Tigger5 DNA MER2_type -2261 62 1 218 259 0 0 chr15 24205953 24206007 -61489747 + GA-rich Low_complexity Low_complexity 1 54 0 341 248 86 50 chr15 24206100 24206298 -61489456 + L1ME3A LINE L1 4132 4336 -1810 293 299 0 0 chr15 24206357 24206424 -61489330 - MER96B DNA MER1_type? -107 68 2 505 321 6 0 chr15 24206437 24206602 -61489152 + L1ME3A LINE L1 5401 5566 -596 242 259 0 0 chr15 24206607 24206661 -61489093 + L1ME3A LINE L1 5664 5717 -453 450 216 29 0 chr15 24206696 24206798 -61488956 + L1ME3A LINE L1 5797 5901 -269 1376 223 117 45 chr15 24206799 24207166 -61488588 - MLT1D LTR MaLR 0 505 95 2250 96 3 10 chr15 24207166 24207479 -61488275 - AluSx SINE Alu -1 311 1 1376 223 117 45 chr15 24207479 24207582 -61488172 - MLT1D LTR MaLR -410 95 1 241 143 179 48 chr15 24208117 24208201 -61487553 - L1ME4a LINE L1 -41 6080 5986 * 256 191 113 52 chr15 24208177 24208292 -61487462 + HAL1b LINE L1 1225 1346 -2 248 254 30 130 chr15 24208360 24208529 -61487225 - MIR SINE MIR -12 250 99 238 50 50 0 chr15 24210974 24211014 -61484740 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 211 351 52 30 chr15 24211235 24211369 -61484385 - MIR SINE MIR -45 217 81 405 198 12 0 chr15 24211415 24211496 -61484258 + MER94 DNA DNA 4 85 -49 323 298 63 24 chr15 24211664 24211869 -61483885 - L1ME4a LINE L1 -175 5946 5734 1286 211 45 23 chr15 24212105 24212413 -61483341 - MLT1A2 LTR MaLR 0 374 60 342 276 113 43 chr15 24212517 24212702 -61483052 - L1ME4a LINE L1 -2272 3874 3677 29 70 0 0 chr15 24214251 24214308 -61481446 + AT_rich Low_complexity Low_complexity 1 57 0 1127 137 168 0 chr15 24215043 24215269 -61480485 + MER21A LTR ERV1 1 264 -667 2866 134 79 28 chr15 24215274 24215803 -61479951 + MER21A LTR ERV1 376 931 0 1353 188 8 13 chr15 24217095 24217334 -61478420 + MER41D LTR ERV1 320 557 0 1971 311 172 14 chr15 24217339 24217951 -61477803 - HAL1 LINE L1 -364 2143 1629 423 0 0 0 chr15 24217951 24217998 -61477756 + (TG)n Simple_repeat Simple_repeat 2 48 0 1971 311 172 14 chr15 24217998 24219122 -61476632 - HAL1 LINE L1 -878 1629 134 2020 128 0 30 chr15 24219851 24220156 -61475598 + AluSx SINE Alu 1 296 -16 1712 132 147 24 chr15 24221621 24221955 -61473799 + THE1C LTR MaLR 1 375 0 2236 74 10 17 chr15 24223122 24223419 -61472335 - AluY SINE Alu -16 295 1 1918 133 3 20 chr15 24223685 24223986 -61471768 + AluSx SINE Alu 1 296 -16 548 250 71 35 chr15 24224512 24224830 -61470924 - L1MC4 LINE L1 -733 7228 6930 21 0 0 0 chr15 24224834 24224855 -61470899 + AT_rich Low_complexity Low_complexity 1 21 0 659 312 52 55 chr15 24224941 24225306 -61470448 + L1MB1 LINE L1 5 368 -5523 452 328 42 51 chr15 24225368 24225753 -61470001 + L1MB1 LINE L1 193 513 -5378 665 313 4 8 chr15 24225923 24226169 -61469585 + L1MB1 LINE L1 666 910 -4991 9412 208 35 23 chr15 24226184 24228264 -61467490 + L1MB1 LINE L1 2531 4671 -1321 1787 132 4 4 chr15 24228264 24228530 -61467224 + AluSx SINE Alu 39 304 -8 9412 208 35 23 chr15 24228530 24229856 -61465898 + L1MB1 LINE L1 4671 5979 -13 1030 324 77 20 chr15 24229864 24230467 -61465287 - L2 LINE L2 -90 3223 2574 1233 242 36 15 chr15 24232112 24232443 -61463311 + MLT1A1 LTR MaLR 26 363 -2 400 127 0 32 chr15 24233008 24233071 -61462683 - AluJo SINE Alu -17 295 235 360 230 0 0 chr15 24233071 24233145 -61462609 - MER52A LTR ERV1 0 1755 1682 * 3690 187 114 88 chr15 24233135 24234276 -61461478 - MER52A LTR ERV1 -559 1196 25 1148 232 4 8 chr15 24234281 24234522 -61461232 - AluJo SINE Alu -72 240 1 1527 167 54 70 chr15 24235563 24235650 -61460104 + MLT1A1 LTR MaLR 1 88 -277 2191 115 0 0 chr15 24235650 24235965 -61459789 + AluSg SINE Alu 3 317 0 1527 167 54 70 chr15 24235965 24236247 -61459507 + MLT1A1 LTR MaLR 88 365 0 25 31 0 0 chr15 24236964 24236996 -61458758 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr15 24238492 24238525 -61457229 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr15 24239403 24239426 -61456328 + AT_rich Low_complexity Low_complexity 1 23 0 1515 199 0 27 chr15 24239708 24240004 -61455750 - AluJo SINE Alu -22 290 3 196 260 20 0 chr15 24240284 24240334 -61455420 + L2 LINE L2 3217 3267 -5 277 323 46 36 chr15 24240519 24240714 -61455040 - L2 LINE L2 0 3313 3117 1966 156 11 11 chr15 24241090 24241437 -61454317 - MER7A DNA MER2_type -1 345 1 8541 99 28 11 chr15 24242489 24243292 -61452462 - L1PA8 LINE L1 0 6172 5384 2186 116 0 7 chr15 24243292 24243595 -61452159 - AluSq SINE Alu -12 301 1 8541 99 28 11 chr15 24243595 24244886 -61450868 - L1PA8 LINE L1 -788 5384 4044 1229 197 197 0 chr15 24246011 24246396 -61449358 + Charlie1b DNA MER1_type 56 516 -7 1135 225 14 5 chr15 24246501 24246723 -61449031 - MER58A DNA MER1_type 0 224 1 435 68 0 0 chr15 24246767 24246826 -61448928 + (TG)n Simple_repeat Simple_repeat 1 59 0 277 351 32 44 chr15 24246860 24247108 -61448646 - MIR SINE MIR -6 256 12 215 261 118 98 chr15 24247180 24247333 -61448421 - MIR SINE MIR -56 206 51 670 211 42 66 chr15 24249162 24249375 -61446379 + L1ME3 LINE L1 5857 6064 -98 285 285 131 36 chr15 24249436 24249573 -61446181 - MER5A DNA MER1_type -30 159 10 21 71 0 0 chr15 24250107 24250149 -61445605 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr15 24250374 24250412 -61445342 + AT_rich Low_complexity Low_complexity 1 38 0 6834 139 4 10 chr15 24250416 24251990 -61443764 - L1MA2 LINE L1 0 6304 4738 2181 68 0 44 chr15 24251998 24252339 -61443415 - AluY SINE Alu 0 328 1 2501 170 10 5 chr15 24252513 24252925 -61442829 + L1M4c LINE L1 19 432 -5952 4060 27 4 0 chr15 24252935 24253414 -61442340 - L1PA3 LINE L1 -1 6154 5674 706 153 7 35 chr15 24253414 24253558 -61442196 - L1M4c LINE L1 -5829 555 416 244 59 0 0 chr15 24253556 24253590 -61442164 - L1P1 LINE L1 -488 5667 5634 * 4696 191 41 26 chr15 24253644 24254741 -61441013 + L1M4c LINE L1 416 1528 -4856 465 252 0 0 chr15 24254738 24254865 -61440889 + L1P LINE L1 3367 3493 -2653 * 4333 202 19 1 chr15 24254861 24255777 -61439977 + L1 LINE L1 3414 4345 -1801 2161 126 0 0 chr15 24255789 24256082 -61439672 + AluSx SINE Alu 3 295 -17 6534 240 40 14 chr15 24256101 24258244 -61437510 - L1 LINE L1 -2016 5549 3356 313 220 0 49 chr15 24258258 24258361 -61437393 - L1 LINE L1 -4157 3409 3039 1114 186 5 9 chr15 24258368 24258589 -61437165 - Tigger5 DNA MER2_type 0 2323 2104 17319 176 50 17 chr15 24258589 24264233 -61431521 - L1M4 LINE L1 -942 6623 642 1408 139 15 0 chr15 24264233 24264434 -61431320 - AluSg SINE Alu -106 204 1 300 186 26 88 chr15 24264440 24264553 -61431201 - L1M4 LINE L1 -7457 108 3 * 962 276 31 19 chr15 24264552 24264874 -61430880 + L1MEc LINE L1 265 590 -5806 1037 295 108 29 chr15 24264897 24265749 -61430005 + L1MEc LINE L1 1133 2051 -4345 5704 75 26 51 chr15 24265788 24266676 -61429078 + SVA Other Other 1 866 -520 2670 145 13 38 chr15 24266693 24267294 -61428460 + SVA Other Other 549 1134 -252 979 204 42 21 chr15 24270307 24270592 -61425162 + L1MA5 LINE L1 6000 6290 -10 543 274 156 4 chr15 24270622 24270892 -61424862 - Charlie2 DNA MER1_type -687 2175 1865 720 267 42 59 chr15 24270898 24271205 -61424549 - Charlie2 DNA MER1_type -2480 302 1 1325 219 84 13 chr15 24271443 24271754 -61424000 + L1MCa LINE L1 7 339 -6087 276 208 271 0 chr15 24271816 24271912 -61423842 + L1 LINE L1 1238 1359 -4998 1158 215 14 24 chr15 24272046 24272339 -61423415 + L1 LINE L1 6334 6623 -942 1046 199 5 9 chr15 24272339 24272560 -61423194 + Tigger5 DNA MER2_type 2104 2323 0 313 220 0 49 chr15 24272567 24272670 -61423084 + L1M3b LINE L1 3039 3409 -4157 3512 179 21 13 chr15 24272884 24274002 -61421752 - L1MB1 LINE L1 -227 5941 4815 623 264 6 6 chr15 24274018 24274181 -61421573 - AluSg/x SINE Alu -29 283 121 6381 75 16 45 chr15 24274308 24275461 -61420293 + SVA Other Other 433 1386 0 207 0 0 0 chr15 24275486 24275509 -61420245 + (A)n Simple_repeat Simple_repeat 1 23 0 1165 262 50 14 chr15 24275566 24276119 -61419635 + L1MCa LINE L1 2250 2782 -3644 251 291 18 18 chr15 24276185 24276295 -61419459 - MER4E LTR ERV1 -39 740 631 21 0 0 0 chr15 24276340 24276361 -61419393 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr15 24278974 24279003 -61416751 + (TG)n Simple_repeat Simple_repeat 2 30 0 572 333 52 13 chr15 24280783 24281014 -61414740 + MIR SINE MIR 23 262 0 284 219 208 0 chr15 24281048 24281144 -61414610 - L1ME1 LINE L1 -26 6140 6025 248 408 41 10 chr15 24281144 24281340 -61414414 - MIR3 SINE MIR -2 206 5 1276 242 149 48 chr15 24282020 24282630 -61413124 - Charlie2 DNA MER1_type -1 2861 2128 1978 136 60 8 chr15 24282630 24282999 -61412755 + L1MA5 LINE L1 5908 6295 -5 1276 242 149 48 chr15 24282999 24283293 -61412461 - Charlie2 DNA MER1_type -734 2128 1865 766 268 41 57 chr15 24283289 24283606 -61412148 - Charlie2 DNA MER1_type -2470 312 1 * 1325 219 84 13 chr15 24283844 24284155 -61411599 + L1MCa LINE L1 7 339 -6087 1680 249 54 18 chr15 24284217 24285340 -61410414 + L1MA7 LINE L1 2340 3392 -4174 6258 230 62 14 chr15 24285400 24287461 -61408293 + L1MA7 LINE L1 3313 5606 -1959 2524 194 27 11 chr15 24287471 24288029 -61407725 + L1MA7 LINE L1 6042 6608 -957 318 203 0 0 chr15 24288029 24288088 -61407666 + L1MA7 LINE L1 7269 7327 -383 418 137 0 84 chr15 24288093 24288188 -61407566 - L1M2 LINE L1 -827 5464 5378 5250 240 42 20 chr15 24288230 24289803 -61405951 + L1M4 LINE L1 3627 5234 -912 544 250 40 28 chr15 24289815 24290095 -61405659 + L1MCa LINE L1 1266 1676 -4868 5325 163 50 15 chr15 24290312 24291413 -61404341 + L1MC1 LINE L1 6605 7737 -15 24 0 0 0 chr15 24291813 24291837 -61403917 + AT_rich Low_complexity Low_complexity 1 24 0 1962 158 90 20 chr15 24291861 24292260 -61403494 - MSTA LTR MaLR -1 427 1 23 33 0 0 chr15 24293637 24293667 -61402087 + AT_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr15 24294491 24294522 -61401232 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 583 216 182 0 chr15 24294658 24294806 -61400948 - MER69A DNA AcHobo -2 175 1 480 261 121 25 chr15 24294838 24294995 -61400759 + MIR SINE MIR 85 256 -6 2440 64 0 6 chr15 24296286 24296599 -61399155 + AluY SINE Alu 1 311 0 194 342 70 63 chr15 24296639 24296797 -61398957 - L2 LINE L2 -601 2713 2555 36 53 0 0 chr15 24297247 24297304 -61398450 + AT_rich Low_complexity Low_complexity 1 57 0 466 257 173 18 chr15 24297545 24297771 -61397983 - L1ME3A LINE L1 -244 5926 5666 196 227 0 0 chr15 24299155 24299199 -61396555 + L2 LINE L2 3270 3313 0 183 42 0 0 chr15 24299679 24299703 -61396051 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 311 379 42 25 chr15 24299879 24300119 -61395635 - L2 LINE L2 -211 3061 2818 1742 245 40 30 chr15 24301372 24301726 -61394028 + L1M4 LINE L1 4017 4383 -1763 2031 111 0 7 chr15 24301726 24302006 -61393748 + AluSg SINE Alu 16 293 -17 1742 245 40 30 chr15 24302006 24302295 -61393459 + L1M4 LINE L1 4383 4667 -1479 1257 104 0 16 chr15 24302284 24302466 -61393288 - THE1-int LTR MaLR -164 1416 1238 * 1494 256 23 2 chr15 24302476 24302917 -61392837 + L1M4 LINE L1 4660 5109 -1037 1062 118 43 0 chr15 24302983 24303144 -61392610 - THE1C LTR MaLR 0 375 208 2538 117 0 3 chr15 24303146 24303489 -61392265 + THE1C LTR MaLR 34 375 0 940 246 0 0 chr15 24303489 24303692 -61392062 + L1PA16 LINE L1 5962 6164 -2 244 318 125 0 chr15 24303960 24304048 -61391706 + L2 LINE L2 3143 3241 -31 672 227 31 49 chr15 24304085 24304310 -61391444 - MER65B LTR ERV1 -129 402 182 22 70 0 0 chr15 24304734 24304777 -61390977 + AT_rich Low_complexity Low_complexity 1 43 0 335 240 123 39 chr15 24305250 24305429 -61390325 - L1ME4a LINE L1 -1 6120 5927 317 325 58 37 chr15 24305432 24305623 -61390131 - L1ME3A LINE L1 -563 5558 5364 42843 35 21 1 chr15 24306770 24312798 -61382956 + L1PA2 LINE L1 1 6150 -5 34 42 0 0 chr15 24312815 24312863 -61382891 + AT_rich Low_complexity Low_complexity 1 48 0 1444 211 63 0 chr15 24313002 24313305 -61382449 - L1MC1 LINE L1 -23 6310 5989 279 303 174 8 chr15 24314067 24314199 -61381555 - L2 LINE L2 0 3313 3160 186 200 0 0 chr15 24314469 24314499 -61381255 - L3 LINE CR1 -23 1554 1525 312 287 33 16 chr15 24314499 24314621 -61381133 - MER117 DNA MER1_type 0 197 74 1042 287 50 67 chr15 24315135 24315514 -61380240 - L2 LINE L2 0 3313 2942 2250 87 0 3 chr15 24315514 24315800 -61379954 - AluSc SINE Alu -24 285 1 1042 287 50 67 chr15 24315800 24315915 -61379839 - L2 LINE L2 -371 2942 2827 2834 10 0 0 chr15 24316016 24316325 -61379429 - AluYa5 SINE Alu -2 309 1 556 281 49 30 chr15 24317338 24317541 -61378213 + MIR SINE MIR 53 259 -3 1628 168 7 105 chr15 24317882 24318292 -61377462 - MLT1A2 LTR MaLR 0 374 5 556 287 112 45 chr15 24318484 24318798 -61376956 + MLT1H LTR MaLR 210 544 -5 772 282 115 42 chr15 24319048 24319449 -61376305 - MLT1J LTR MaLR 0 511 82 355 196 15 75 chr15 24319785 24319918 -61375836 - L1MC5 LINE L1 -83 7878 7754 186 43 0 0 chr15 24321064 24321087 -61374667 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 495 158 9 70 chr15 24321808 24321922 -61373832 + MER53 DNA DNA 1 107 -82 820 168 25 6 chr15 24322280 24322441 -61373313 - L1MB1 LINE L1 -1 6167 6004 23 33 0 0 chr15 24322500 24322530 -61373224 + AT_rich Low_complexity Low_complexity 1 30 0 1944 203 84 36 chr15 24322848 24323322 -61372432 - MLT1D LTR MaLR -8 497 1 585 254 180 0 chr15 24323730 24323919 -61371835 + MIR SINE MIR 5 227 -35 211 380 0 0 chr15 24324588 24324667 -61371087 - L2 LINE L2 -3 3310 3232 22 0 0 0 chr15 24325794 24325816 -61369938 + GC_rich Low_complexity Low_complexity 1 22 0 399 234 21 0 chr15 24327209 24327354 -61368400 + (TA)n Simple_repeat Simple_repeat 1 148 0 272 238 16 0 chr15 24330389 24330452 -61365302 + CT-rich Low_complexity Low_complexity 1 64 0 1335 220 0 14 chr15 24332135 24332421 -61363333 + AluJb SINE Alu 5 286 -26 1036 284 150 0 chr15 24333225 24333559 -61362195 + L2 LINE L2 1117 1500 -1814 304 313 78 35 chr15 24333565 24333795 -61361959 + L1ME LINE L1 5523 5762 -359 395 361 61 0 chr15 24334141 24334321 -61361433 + L2 LINE L2 2476 2666 -648 642 257 76 0 chr15 24334342 24334513 -61361241 + MIR SINE MIR 5 188 -74 1285 154 31 18 chr15 24334513 24334740 -61361014 + MER46A DNA MER2_type 6 235 -1 261 341 16 23 chr15 24334766 24334895 -61360859 + L2 LINE L2 2709 2836 -478 212 0 36 0 chr15 24334894 24334922 -61360832 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 * 539 313 84 43 chr15 24334930 24335301 -61360453 + L2 LINE L2 2921 3306 -7 540 81 0 0 chr15 24335307 24335381 -61360373 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 202 348 45 9 chr15 24336678 24336790 -61358964 - MIR SINE MIR -51 211 96 497 163 0 11 chr15 24339253 24339345 -61356409 - L1MA8 LINE L1 -426 5874 5784 1801 146 60 3 chr15 24339345 24339706 -61356048 + L1MA8 LINE L1 5904 6288 -3 376 335 72 31 chr15 24341074 24341268 -61354486 - MIR SINE MIR -3 259 58 21 0 0 0 chr15 24341659 24341680 -61354074 + AT_rich Low_complexity Low_complexity 1 21 0 2257 149 82 9 chr15 24342813 24343332 -61352422 + LTR35 LTR ERV1 1 618 0 4306 148 11 13 chr15 24343366 24344078 -61351676 + MER50 LTR ERV1 1 711 -23 1566 164 164 31 chr15 24344388 24344777 -61350977 + LTR48 LTR ERV1 3 443 -344 695 149 49 26 chr15 24344792 24345006 -61350748 + LTR48 LTR ERV1 550 707 0 324 271 167 31 chr15 24345868 24346060 -61349694 + MIR SINE MIR 41 258 -4 205 244 0 0 chr15 24346210 24346251 -61349503 - L2 LINE L2 -19 3294 3254 23 0 0 0 chr15 24346794 24346817 -61348937 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr15 24346977 24347015 -61348739 + AT_rich Low_complexity Low_complexity 1 38 0 333 267 19 38 chr15 24347586 24347691 -61348063 - MIR SINE MIR -66 142 40 199 321 125 30 chr15 24348998 24349166 -61346588 + MER5A DNA MER1_type 3 186 -3 513 0 0 0 chr15 24349238 24349295 -61346459 + (CA)n Simple_repeat Simple_repeat 1 57 0 732 319 12 16 chr15 24349300 24349548 -61346206 + MIR SINE MIR 12 258 -4 245 296 70 49 chr15 24349988 24350130 -61345624 + MIR3 SINE MIR 32 176 -32 367 285 80 0 chr15 24350444 24350595 -61345159 + MER103 DNA DNA 3 165 -1 2168 91 27 3 chr15 24351737 24352033 -61343721 + AluSc SINE Alu 1 303 -6 293 326 42 0 chr15 24352474 24352618 -61343136 - L1MC4a LINE L1 -1894 5914 5765 235 276 13 13 chr15 24354113 24354189 -61341565 + MIR SINE MIR 174 249 -13 376 191 169 74 chr15 24354282 24354471 -61341283 + MER3 DNA MER1_type 2 208 -1 * 903 144 64 43 chr15 24354471 24354519 -61341235 - MER3 DNA MER1_type -157 52 1 416 190 17 69 chr15 24354538 24354654 -61341100 + MER3 DNA MER1_type 100 209 0 22 56 0 0 chr15 24357170 24357206 -61338548 + AT_rich Low_complexity Low_complexity 1 36 0 436 271 41 60 chr15 24357871 24358137 -61337617 + L1MC4a LINE L1 5260 5520 -2288 963 184 48 14 chr15 24358137 24358449 -61337305 + MLT1A1 LTR MaLR 1 365 0 463 284 92 37 chr15 24358458 24358807 -61336947 + L1MC4a LINE L1 5525 5892 -1916 252 0 0 0 chr15 24358810 24358838 -61336916 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 277 21 0 chr15 24358994 24359088 -61336666 + (TA)n Simple_repeat Simple_repeat 1 96 0 306 50 0 0 chr15 24359110 24359150 -61336604 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 25 0 0 chr15 24359327 24359367 -61336387 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 318 36 67 chr15 24359526 24359721 -61336033 + MIR SINE MIR 74 262 0 662 305 33 9 chr15 24360178 24360409 -61335345 - MIR SINE MIR -13 249 18 2155 247 14 43 chr15 24361156 24361711 -61334043 - MLT1H LTR MaLR -2 547 9 902 299 66 28 chr15 24362509 24362931 -61332823 + LTR33 LTR ERVL 30 467 -54 1646 202 50 17 chr15 24363020 24363436 -61332318 + Charlie4a DNA MER1_type 46 475 -33 312 143 0 0 chr15 24363462 24363518 -61332236 + (CA)n Simple_repeat Simple_repeat 1 56 0 225 296 182 30 chr15 24364220 24364352 -61331402 + L2 LINE L2 3121 3272 0 1229 27 0 0 chr15 24365483 24365631 -61330123 + L1PA2 LINE L1 6008 6155 0 35 0 0 0 chr15 24365631 24365666 -61330088 + AT_rich Low_complexity Low_complexity 1 35 0 661 255 6 35 chr15 24365828 24366011 -61329743 - MIR SINE MIR 0 262 88 292 156 0 0 chr15 24366104 24366149 -61329605 + L2 LINE L2 3267 3311 -2 2006 145 15 38 chr15 24366657 24366981 -61328773 - L1MC/D LINE L1 -716 5617 5301 2193 101 7 7 chr15 24366981 24367289 -61328465 - AluSq SINE Alu -3 310 3 2006 145 15 38 chr15 24367289 24367366 -61328388 - L1MC/D LINE L1 -1032 5301 5224 2027 211 67 2 chr15 24367409 24367845 -61327909 + MLT1C LTR MaLR 4 467 0 697 98 30 37 chr15 24368867 24369031 -61326723 + CT-rich Low_complexity Low_complexity 4 166 0 276 130 0 0 chr15 24369031 24369077 -61326677 + (CA)n Simple_repeat Simple_repeat 1 46 0 209 171 76 32 chr15 24369314 24369472 -61326282 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 436 190 46 11 chr15 24369354 24369528 -61326226 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr15 24369549 24369599 -61326155 + (CA)n Simple_repeat Simple_repeat 1 77 0 243 0 0 0 chr15 24369599 24369626 -61326128 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 179 77 39 chr15 24370345 24370423 -61325331 + L2 LINE L2 3190 3270 -2 245 293 37 0 chr15 24370434 24370516 -61325238 - MIR3 SINE MIR -9 199 115 736 187 44 16 chr15 24371352 24371534 -61324220 - MER53 DNA DNA -2 187 1 755 171 30 80 chr15 24372097 24372296 -61323458 + MER5A DNA MER1_type 1 189 0 182 208 19 0 chr15 24372543 24372596 -61323158 + CT-rich Low_complexity Low_complexity 2 55 0 4774 219 25 43 chr15 24373298 24373988 -61321766 - L1MB5 LINE L1 -9 6165 5464 270 0 0 0 chr15 24373988 24374018 -61321736 + (TG)n Simple_repeat Simple_repeat 2 31 0 4774 219 25 43 chr15 24374018 24375479 -61320275 - L1MB5 LINE L1 -710 5464 4051 1092 223 8 20 chr15 24375495 24375746 -61320008 + L1M4 LINE L1 494 741 -5801 29 0 0 0 chr15 24375781 24375810 -61319944 + AT_rich Low_complexity Low_complexity 1 29 0 5873 144 23 4 chr15 24375813 24377249 -61318505 - L1PB3 LINE L1 -5 6149 4686 938 293 98 39 chr15 24377259 24377699 -61318055 - L1M4 LINE L1 -6072 470 5 5842 164 4 11 chr15 24377967 24378823 -61316931 - L1P4 LINE L1 -705 5458 4611 1922 149 65 14 chr15 24378823 24379178 -61316576 + THE1C LTR MaLR 1 373 -2 5842 164 4 11 chr15 24379178 24379489 -61316265 - L1P4 LINE L1 -1552 4611 4299 1971 196 43 37 chr15 24379484 24379973 -61315781 + L1MB8 LINE L1 5686 6177 -1 * 246 336 31 39 chr15 24380161 24380289 -61315465 - L2 LINE L2 -29 3284 3158 4740 208 81 52 chr15 24380361 24382643 -61313111 + L1MDb LINE L1 28 2448 -3958 2340 189 6 73 chr15 24382643 24383193 -61312561 - MLT2B2 LTR ERVL 0 515 3 4740 208 81 52 chr15 24383193 24384119 -61311635 + L1MDb LINE L1 2448 3346 -3060 2157 97 0 0 chr15 24384219 24384488 -61311266 - AluSg SINE Alu -41 269 1 2403 251 39 42 chr15 24384488 24385551 -61310203 + L1M4 LINE L1 3020 5315 -831 3018 121 17 0 chr15 24385651 24386115 -61309639 + L1PA13 LINE L1 5673 6144 -19 845 231 19 10 chr15 24386135 24386343 -61309411 - L1M4 LINE L1 -487 6502 6293 2681 245 22 25 chr15 24386375 24387162 -61308592 - L1M4 LINE L1 -1992 4965 4182 * 5149 259 57 43 chr15 24387157 24388799 -61306955 - L1M4 LINE L1 -5189 1670 6 889 289 78 39 chr15 24388798 24389366 -61306388 - HAL1b LINE L1 -650 698 109 * 542 285 146 0 chr15 24389763 24389921 -61305833 + MER5A DNA MER1_type 9 189 0 454 248 241 0 chr15 24389921 24390058 -61305696 - MER5B DNA MER1_type -8 170 1 190 378 0 22 chr15 24390723 24390813 -61304941 - L3 LINE CR1 -557 1020 933 220 234 0 0 chr15 24391304 24391351 -61304403 + T-rich Low_complexity Low_complexity 4 50 0 231 286 0 0 chr15 24391708 24391771 -61303983 - L1M4 LINE L1 -1549 4597 4535 275 130 48 75 chr15 24391847 24391993 -61303761 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 * 278 154 77 0 chr15 24391904 24391995 -61303759 + (TA)n Simple_repeat Simple_repeat 2 99 0 990 243 68 14 chr15 24391995 24392361 -61303393 - L1M4 LINE L1 -1733 4413 4028 1564 123 0 5 chr15 24392486 24392705 -61303049 + AluSq SINE Alu 1 218 -95 545 212 49 66 chr15 24392945 24393275 -61302479 - MER92C LTR ERV1 0 554 1 329 156 13 13 chr15 24393900 24393977 -61301777 - MER31-int LTR ERV1 -489 4447 4371 576 199 141 34 chr15 24394044 24394250 -61301504 - LTR37A LTR ERV1 -198 228 1 1387 226 24 57 chr15 24394251 24394372 -61301382 - MER31-int LTR ERV1 -687 4249 4126 942 118 0 157 chr15 24394372 24394601 -61301153 + 7SK RNA RNA 1 193 0 1387 226 24 57 chr15 24394601 24394850 -61300904 - MER31-int LTR ERV1 -810 4126 3891 298 358 136 6 chr15 24398379 24398541 -61297213 + L2 LINE L2 3085 3267 -5 3259 135 7 30 chr15 24398851 24399390 -61296364 + MER1A DNA MER1_type 1 527 0 182 278 0 19 chr15 24399405 24399459 -61296295 + MER5B DNA MER1_type 123 175 -3 362 284 128 14 chr15 24399571 24399719 -61296035 + MIR SINE MIR 61 225 -37 242 296 169 14 chr15 24399778 24399920 -61295834 + MIR SINE MIR 99 262 0 263 345 109 0 chr15 24400227 24400346 -61295408 + MIR SINE MIR 93 224 -38 188 356 40 20 chr15 24400898 24400999 -61294755 - MIR SINE MIR -111 151 49 197 119 24 0 chr15 24401307 24401349 -61294405 + T-rich Low_complexity Low_complexity 2 44 0 373 313 50 31 chr15 24401872 24402091 -61293663 + MIR SINE MIR 20 246 -16 480 78 0 0 chr15 24402111 24402175 -61293579 - MADE1 DNA Mariner -4 76 13 23 33 0 0 chr15 24402607 24402637 -61293117 + AT_rich Low_complexity Low_complexity 1 30 0 728 250 70 29 chr15 24403735 24403979 -61291775 - L2 LINE L2 0 3313 3060 355 280 66 41 chr15 24404108 24404306 -61291448 + MIR SINE MIR 5 214 -48 656 288 28 28 chr15 24404343 24404555 -61291199 - MIR SINE MIR -38 224 13 4203 126 42 6 chr15 24404598 24405272 -61290482 - L1PA16 LINE L1 -10 6156 5459 259 314 77 52 chr15 24406004 24406329 -61289425 - LTR33 LTR ERVL -6 515 183 * 1505 205 99 48 chr15 24406327 24406741 -61289013 - MLT1D LTR MaLR -68 437 3 2096 120 0 0 chr15 24408845 24409160 -61286594 + AluSx SINE Alu 1 315 0 276 232 12 49 chr15 24409233 24409315 -61286439 - L2 LINE L2 -1 3312 3234 540 158 0 0 chr15 24410228 24410323 -61285431 + GA-rich Low_complexity Low_complexity 2 96 0 281 30 0 0 chr15 24410340 24410373 -61285381 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 272 274 305 26 chr15 24411101 24411327 -61284427 - L3 LINE CR1 -50 1527 1239 857 175 6 62 chr15 24411601 24411807 -61283947 - L1M1 LINE L1 -797 5506 5318 2650 7 0 7 chr15 24411807 24412099 -61283655 - AluY SINE Alu -4 307 18 857 175 6 62 chr15 24412099 24412146 -61283608 - L1M1 LINE L1 -985 5318 5270 4917 172 17 6 chr15 24412157 24413048 -61282706 - L1MA6 LINE L1 0 6300 5400 6753 167 25 62 chr15 24413112 24414648 -61281106 - L1MA6 LINE L1 -847 5299 3820 13435 142 14 17 chr15 24415386 24417637 -61278117 + Tigger1 DNA MER2_type 2 2246 -172 392 0 0 20 chr15 24417637 24417686 -61278068 + (TTA)n Simple_repeat Simple_repeat 3 50 0 7624 29 0 0 chr15 24417686 24421719 -61274035 - L1PA3 LINE L1 -18 6137 2017 642 254 48 0 chr15 24421719 24421884 -61273870 + Tigger1 DNA MER2_type 2244 2416 -2 291 315 91 21 chr15 24421937 24422080 -61273674 - MIR SINE MIR -108 154 2 984 277 30 22 chr15 24422274 24422639 -61273115 - L1ME3A LINE L1 -168 6002 5635 192 297 0 79 chr15 24424431 24424532 -61271222 + MIR3 SINE MIR 111 203 -5 222 105 0 0 chr15 24425290 24425328 -61270426 + (TC)n Simple_repeat Simple_repeat 2 39 0 1473 167 107 29 chr15 24426362 24426746 -61269008 - Charlie1 DNA MER1_type -5 2756 2343 227 380 0 0 chr15 24426744 24426815 -61268939 - Charlie1 DNA MER1_type -2690 71 1 * 537 245 38 10 chr15 24427238 24427411 -61268343 + MLT1I LTR MaLR 267 409 0 1824 169 86 51 chr15 24427839 24428248 -61267506 - MSTB LTR MaLR -3 423 1 456 307 40 7 chr15 24428463 24428613 -61267141 - MIR SINE MIR -71 191 37 189 222 0 0 chr15 24428661 24428724 -61267030 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 2241 103 0 0 chr15 24429187 24429478 -61266276 + AluSg SINE Alu 18 308 -2 231 280 8 17 chr15 24430588 24430706 -61265048 + (TA)n Simple_repeat Simple_repeat 2 118 0 204 211 0 19 chr15 24431886 24431938 -61263816 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1937 128 43 0 chr15 24434297 24434578 -61261176 - AluSg SINE Alu -17 293 1 30 0 0 0 chr15 24437234 24437264 -61258490 + AT_rich Low_complexity Low_complexity 1 30 0 585 326 141 18 chr15 24437598 24438151 -61257603 - L2 LINE L2 0 3313 2688 442 312 70 5 chr15 24438911 24439097 -61256657 - MIR SINE MIR 0 262 65 201 308 0 0 chr15 24440436 24440488 -61255266 - L2 LINE L2 -15 3257 3206 215 355 109 0 chr15 24441178 24441288 -61254466 + MIR3 SINE MIR 87 208 0 249 240 0 0 chr15 24442172 24442222 -61253532 - MIR SINE MIR -131 131 82 1480 195 58 72 chr15 24442485 24442988 -61252766 + MLT1D LTR MaLR 1 496 -9 826 318 123 17 chr15 24443405 24443754 -61252000 + L2 LINE L2 2927 3312 -1 1847 105 112 14 chr15 24444237 24444522 -61251232 + AluSq SINE Alu 1 313 0 503 291 0 28 chr15 24445118 24445259 -61250495 + MER5A DNA MER1_type 43 179 -10 2298 105 0 10 chr15 24446034 24446340 -61249414 - AluSc SINE Alu -6 303 1 2086 129 24 0 chr15 24446497 24446791 -61248963 + AluSx SINE Alu 1 301 -11 736 186 114 48 chr15 24447073 24447283 -61248471 + MIR SINE MIR 39 262 0 403 274 147 71 chr15 24448273 24448470 -61247284 + MIR SINE MIR 41 252 -10 364 229 60 0 chr15 24449121 24449202 -61246552 - MER47A DNA MER2_type 0 366 281 2191 180 23 16 chr15 24449202 24449629 -61246125 + Tigger7 DNA MER2_type 1 430 -303 325 215 28 93 chr15 24449624 24449731 -61246023 + Tigger7 DNA MER2_type 2388 2487 0 * 1677 129 14 4 chr15 24449731 24450010 -61245744 - MER47A DNA MER2_type -84 282 1 235 267 109 20 chr15 24450721 24450822 -61244932 - MIR SINE MIR -70 192 83 874 206 69 45 chr15 24452665 24452994 -61242760 - MER33 DNA MER1_type 0 324 1 6356 191 26 45 chr15 24453013 24453614 -61242140 - L1MC1 LINE L1 0 6613 6002 183 80 0 0 chr15 24453614 24453639 -61242115 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1322 211 25 21 chr15 24453641 24453921 -61241833 - AluJo SINE Alu -31 281 1 6356 191 26 45 chr15 24453921 24454374 -61241380 - L1MC1 LINE L1 -612 6001 5541 2793 13 0 0 chr15 24454374 24454679 -61241075 + AluYa5 SINE Alu 1 305 -6 6356 191 26 45 chr15 24454679 24454911 -61240843 - L1MC1 LINE L1 -1072 5541 5306 2573 58 0 3 chr15 24454911 24455223 -61240531 - AluY SINE Alu 0 311 1 6356 191 26 45 chr15 24455223 24456151 -61239603 - L1MC1 LINE L1 -1307 5306 4472 2228 111 3 0 chr15 24456151 24456449 -61239305 - AluSx SINE Alu -13 299 1 6356 191 26 45 chr15 24456449 24457436 -61238318 - L1MC1 LINE L1 -2141 4472 3467 1731 162 51 11 chr15 24457438 24458099 -61237655 - L1MC1 LINE L1 -4457 1969 1194 23 33 0 0 chr15 24458194 24458224 -61237530 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 24458298 24458328 -61237426 + AT_rich Low_complexity Low_complexity 1 30 0 6374 15 0 0 chr15 24458328 24459047 -61236707 - L1PA3 LINE L1 -4 6151 5433 186 43 0 0 chr15 24459068 24459091 -61236663 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4179 183 54 30 chr15 24459091 24460196 -61235558 - L1MC1 LINE L1 -5236 1190 24 223 321 176 18 chr15 24460238 24460403 -61235351 + L2 LINE L2 2286 2476 -838 270 320 99 77 chr15 24460589 24461032 -61234722 + L2 LINE L2 2813 3265 -7 2016 220 90 35 chr15 24462179 24462866 -61232888 - L1MC4a LINE L1 -2 7806 7082 192 152 0 0 chr15 24463044 24463077 -61232677 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 788 219 42 137 chr15 24463317 24463783 -61231971 - LTR28 LTR ERV1 -141 894 5 319 207 7 29 chr15 24464680 24464820 -61230934 + (TA)n Simple_repeat Simple_repeat 1 137 0 218 217 0 0 chr15 24464834 24464880 -61230874 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 264 53 24 chr15 24464891 24465099 -61230655 - L1ME4a LINE L1 -216 5905 5692 2389 77 7 0 chr15 24465218 24465528 -61230226 - AluSq SINE Alu 0 313 2 580 282 24 28 chr15 24467188 24467401 -61228353 + MIR SINE MIR 48 259 -3 365 318 103 40 chr15 24467910 24468133 -61227621 - MIR SINE MIR -6 256 20 181 327 0 18 chr15 24468386 24468441 -61227313 - MER5B DNA MER1_type -38 140 87 392 256 50 8 chr15 24469098 24469219 -61226535 - L2 LINE L2 0 3313 3188 396 256 137 30 chr15 24469715 24469883 -61225871 + MER5A DNA MER1_type 1 186 -3 429 360 124 14 chr15 24470636 24470911 -61224843 - L2 LINE L2 0 3272 2968 288 275 104 48 chr15 24471368 24471783 -61223971 + L1ME4a LINE L1 5652 6089 -32 579 237 13 39 chr15 24473672 24473828 -61221926 - L2 LINE L2 0 3313 3162 4227 170 101 18 chr15 24473838 24474697 -61221057 + MER21A LTR ERV1 1 931 0 9706 204 51 19 chr15 24474757 24477993 -61217761 + MER21A-int LTR ERV1 1189 3490 -701 2319 160 26 24 chr15 24477993 24478455 -61217299 + MER21A-int LTR ERV1 3594 4056 -135 1048 40 0 0 chr15 24478457 24478582 -61217172 + L1MA1 LINE L1 6174 6298 -4 598 124 0 0 chr15 24478626 24478715 -61217039 + MER21A-int LTR ERV1 4048 4136 -55 3492 176 111 28 chr15 24478840 24479600 -61216154 + MER21A LTR ERV1 103 925 -6 1732 167 44 0 chr15 24479648 24479941 -61215813 + AluJb SINE Alu 1 306 -6 198 167 0 0 chr15 24479941 24479977 -61215777 + GA-rich Low_complexity Low_complexity 1 36 0 670 292 88 21 chr15 24479989 24480301 -61215453 - L2 LINE L2 -189 3124 2794 2243 99 26 0 chr15 24481175 24481477 -61214277 + AluSx SINE Alu 1 310 -2 286 301 87 23 chr15 24481511 24481684 -61214070 + MIR SINE MIR 9 192 -70 25 31 0 0 chr15 24481698 24481730 -61214024 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 24482092 24482114 -61213640 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 328 243 78 24 chr15 24482131 24482437 -61213317 + MER57A LTR ERV1 18 403 0 2150 127 0 7 chr15 24482775 24483074 -61212680 - AluSx SINE Alu -15 297 1 309 26 0 0 chr15 24483306 24483344 -61212410 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4564 34 0 0 chr15 24483344 24483882 -61211872 - L1PA4 LINE L1 -18 6137 5600 2593 30 23 0 chr15 24483882 24484254 -61211500 + L1PA4 LINE L1 5215 5593 -562 1555 249 12 10 chr15 24484361 24484766 -61210988 + L1ME2 LINE L1 36 441 -5955 * 2961 229 47 30 chr15 24484764 24485774 -61209980 + L1ME2 LINE L1 4182 5208 -1007 581 263 54 32 chr15 24485782 24486060 -61209694 + L1ME2 LINE L1 5940 6223 -10 22 0 0 0 chr15 24486065 24486087 -61209667 + AT_rich Low_complexity Low_complexity 1 22 0 204 270 98 110 chr15 24486365 24486528 -61209226 + MIR3 SINE MIR 20 180 -28 21 0 0 0 chr15 24486817 24486838 -61208916 + AT_rich Low_complexity Low_complexity 1 21 0 2177 122 10 0 chr15 24486970 24487274 -61208480 - AluSx SINE Alu 0 312 6 828 232 43 21 chr15 24488270 24488503 -61207251 + MIR SINE MIR 25 262 0 577 174 0 0 chr15 24488520 24488618 -61207136 + Tigger4(Zombi) DNA MER2_type 2 99 -2632 455 0 18 0 chr15 24488738 24488793 -61206961 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr15 24488792 24488831 -61206923 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 191 336 109 18 chr15 24488875 24488985 -61206769 - L2 LINE L2 -212 3060 2941 200 35 35 0 chr15 24489972 24490001 -61205753 + (CAA)n Simple_repeat Simple_repeat 3 32 0 192 398 54 12 chr15 24491112 24491278 -61204476 + L2 LINE L2 2857 3029 -243 433 273 47 16 chr15 24491515 24491643 -61204111 - MIR SINE MIR -55 207 76 21 36 0 0 chr15 24492268 24492296 -61203458 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr15 24493130 24493158 -61202596 + (TATG)n Simple_repeat Simple_repeat 3 30 0 280 347 78 60 chr15 24493504 24493835 -61201919 + L2 LINE L2 2936 3272 0 213 260 13 13 chr15 24494122 24494199 -61201555 + (TA)n Simple_repeat Simple_repeat 2 78 0 213 121 0 0 chr15 24494246 24494279 -61201475 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 152 0 0 chr15 24494342 24494375 -61201379 + (TA)n Simple_repeat Simple_repeat 1 33 0 226 200 15 15 chr15 24494410 24494475 -61201279 + (TA)n Simple_repeat Simple_repeat 1 65 0 460 211 8 8 chr15 24494536 24494669 -61201085 + (TA)n Simple_repeat Simple_repeat 2 134 0 195 100 0 0 chr15 24496542 24496572 -61199182 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2250 71 7 0 chr15 24497093 24497403 -61198351 + AluY SINE Alu 1 312 0 180 0 0 0 chr15 24497437 24497457 -61198297 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2646 69 3 0 chr15 24497515 24497865 -61197889 - MLT2A1 LTR ERVL -93 351 1 297 292 18 9 chr15 24499180 24499293 -61196461 + (TATATG)n Simple_repeat Simple_repeat 6 119 0 437 181 172 9 chr15 24499360 24499476 -61196278 + MIR SINE MIR 104 238 -24 831 231 51 5 chr15 24500407 24500602 -61195152 - MER3 DNA MER1_type -4 205 2 385 291 122 14 chr15 24501427 24501575 -61194179 + MIR3 SINE MIR 21 184 -24 330 336 23 8 chr15 24501597 24501728 -61194026 + L2 LINE L2 3138 3270 -2 197 83 28 0 chr15 24503074 24503110 -61192644 + (TAA)n Simple_repeat Simple_repeat 2 38 0 773 271 63 9 chr15 24503112 24503333 -61192421 - MIR SINE MIR -23 239 7 259 254 164 57 chr15 24503448 24503570 -61192184 - MER45A DNA AcHobo -43 135 1 1793 123 74 49 chr15 24503770 24504136 -61191618 - THE1C LTR MaLR 0 375 1 2328 99 0 0 chr15 24505619 24505912 -61189842 + AluSx SINE Alu 1 293 -19 618 101 28 0 chr15 24505912 24506021 -61189733 + GA-rich Low_complexity Low_complexity 1 112 0 354 318 87 0 chr15 24506296 24506422 -61189332 - MER91C DNA MER1_type -3 137 1 322 288 87 80 chr15 24506594 24506893 -61188861 - L2 LINE L2 -168 3104 2804 455 290 159 14 chr15 24507029 24507243 -61188511 + MIR SINE MIR 11 255 -7 21 0 0 0 chr15 24507583 24507604 -61188150 + AT_rich Low_complexity Low_complexity 1 21 0 258 207 0 0 chr15 24507712 24507770 -61187984 + (CA)n Simple_repeat Simple_repeat 2 59 0 195 42 0 0 chr15 24507770 24507794 -61187960 + (GA)n Simple_repeat Simple_repeat 2 25 0 1302 0 0 0 chr15 24508503 24508675 -61187079 - AluYa5 SINE Alu 0 309 138 767 219 124 0 chr15 24509056 24509321 -61186433 + L1ME3A LINE L1 5865 6162 -8 540 297 103 6 chr15 24509942 24510117 -61185637 - MIR SINE MIR -34 228 37 1621 202 0 0 chr15 24510286 24510573 -61185181 + AluSx SINE Alu 12 298 -14 1852 138 0 66 chr15 24510605 24510924 -61184830 + AluSx SINE Alu 1 298 -14 571 321 41 16 chr15 24511852 24512098 -61183656 - MIR SINE MIR -10 252 1 2126 130 3 0 chr15 24518257 24518558 -61177196 + AluSx SINE Alu 1 302 -10 214 282 0 56 chr15 24519638 24519709 -61176045 - L2 LINE L2 -212 3060 2994 25 31 0 0 chr15 24519770 24519802 -61175952 + AT_rich Low_complexity Low_complexity 1 32 0 2225 93 7 0 chr15 24519809 24520099 -61175655 - AluSp SINE Alu -21 292 1 2254 85 10 7 chr15 24522272 24522565 -61173189 + AluY SINE Alu 3 296 -15 2054 114 4 0 chr15 24522831 24523102 -61172652 - AluSx SINE Alu -32 280 9 341 252 96 15 chr15 24523617 24523752 -61172002 - MIR SINE MIR 0 262 117 468 286 141 5 chr15 24524853 24525052 -61170702 + MIR SINE MIR 28 253 -9 344 346 71 82 chr15 24525397 24525677 -61170077 + L2 LINE L2 2977 3253 -19 180 0 0 0 chr15 24527277 24527297 -61168457 + (T)n Simple_repeat Simple_repeat 1 20 0 2410 113 0 24 chr15 24529772 24530145 -61165609 - THE1B LTR MaLR 0 364 1 1694 186 37 3 chr15 24530902 24531198 -61164556 - AluJo SINE Alu -6 306 1 191 441 38 25 chr15 24531203 24531523 -61164231 + L2 LINE L2 2554 2877 -437 214 320 77 0 chr15 24532366 24532444 -61163310 - MIR SINE MIR -96 166 83 527 336 58 0 chr15 24532479 24532702 -61163052 + MIR SINE MIR 21 256 -6 693 259 15 72 chr15 24532840 24533103 -61162651 + MIR SINE MIR 14 261 -1 1251 187 3 60 chr15 24533407 24533690 -61162064 + Tigger7 DNA MER2_type 1 267 -466 366 171 146 12 chr15 24533703 24533785 -61161969 + Tigger7 DNA MER2_type 2395 2487 0 730 211 33 28 chr15 24534236 24534416 -61161338 + MIR SINE MIR 79 259 -3 357 327 216 7 chr15 24534829 24535107 -61160647 + L2 LINE L2 2418 2753 -561 294 220 100 30 chr15 24535176 24535276 -61160478 - MLT1F LTR MaLR -25 517 411 217 286 59 50 chr15 24535628 24535684 -61160070 + L2 LINE L2 2835 2889 -383 183 42 0 0 chr15 24535684 24535708 -61160046 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 217 286 59 50 chr15 24535708 24535770 -61159984 + L2 LINE L2 2889 2954 -318 196 221 59 44 chr15 24536363 24536431 -61159323 - MIR SINE MIR -121 87 19 729 190 28 0 chr15 24537238 24537380 -61158374 - MER105 DNA DNA -7 197 52 * 1937 194 39 67 chr15 24537379 24537889 -61157865 + MLT1D LTR MaLR 10 505 0 239 210 65 16 chr15 24537889 24537946 -61157808 - MER105 DNA DNA -144 60 1 374 376 24 6 chr15 24539025 24539190 -61156564 - MIR SINE MIR -89 173 6 1562 207 29 45 chr15 24540997 24541374 -61154380 + MLT1A2 LTR MaLR 1 371 -3 2013 169 35 36 chr15 24541382 24541939 -61153815 - MLT2A2 LTR ERVL 0 554 1 408 177 10 52 chr15 24541939 24542035 -61153719 - MER45 DNA AcHobo -22 1559 1468 580 159 61 23 chr15 24542041 24542173 -61153581 - MER45 DNA AcHobo -1394 187 51 294 305 82 67 chr15 24542215 24542484 -61153270 - L2 LINE L2 -888 2426 2154 276 331 46 39 chr15 24542485 24542615 -61153139 + L2 LINE L2 3182 3312 -1 319 245 167 0 chr15 24543984 24544086 -61151668 + MIR SINE MIR 4 122 -140 386 236 81 41 chr15 24544288 24544411 -61151343 - MIR SINE MIR -107 155 28 2150 131 3 0 chr15 24545335 24545641 -61150113 + AluSx SINE Alu 1 307 -5 203 277 108 0 chr15 24545657 24545722 -61150032 - MIR SINE MIR -71 191 120 725 318 31 4 chr15 24546050 24546305 -61149449 + MIR SINE MIR 1 262 0 411 299 91 42 chr15 24546425 24546666 -61149088 - MIR SINE MIR -8 254 2 420 407 17 28 chr15 24546711 24547070 -61148684 + L2 LINE L2 2821 3175 -97 824 184 36 0 chr15 24547186 24547354 -61148400 + MER3 DNA MER1_type 2 128 -81 228 294 50 78 chr15 24547808 24547988 -61147766 + L2 LINE L2 3139 3313 0 180 295 155 111 chr15 24548578 24548920 -61146834 - L2 LINE L2 -10 3262 2906 264 313 135 24 chr15 24549433 24549641 -61146113 - MIR SINE MIR -12 250 20 363 349 102 49 chr15 24549902 24550226 -61145528 - L2 LINE L2 0 3272 2932 367 239 60 22 chr15 24551471 24551605 -61144149 + MIR SINE MIR 78 216 -46 25 0 0 0 chr15 24551661 24551686 -61144068 + AT_rich Low_complexity Low_complexity 1 25 0 1871 143 10 52 chr15 24551694 24552125 -61143629 + L1MA9 LINE L1 5933 6347 0 2133 100 10 32 chr15 24552217 24552574 -61143180 + AluSx SINE Alu 1 350 0 228 250 0 0 chr15 24553548 24553600 -61142154 + L2 LINE L2 3143 3194 -78 230 250 52 73 chr15 24554121 24554217 -61141537 + MIR3 SINE MIR 110 203 -5 581 314 16 31 chr15 24554224 24554415 -61141339 - MIR3 SINE MIR -11 197 10 1399 175 59 31 chr15 24554628 24554914 -61140840 - AluJb SINE Alu -18 294 1 527 297 22 43 chr15 24555242 24555427 -61140327 + MER5A DNA MER1_type 4 184 -5 225 0 0 0 chr15 24555723 24555748 -61140006 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1961 95 0 0 chr15 24555748 24556000 -61139754 - AluY SINE Alu -33 278 27 22 56 0 0 chr15 24557818 24557854 -61137900 + AT_rich Low_complexity Low_complexity 1 36 0 1763 174 32 29 chr15 24558104 24558414 -61137340 - AluJo SINE Alu -1 311 1 202 296 0 0 chr15 24560123 24560177 -61135577 + CT-rich Low_complexity Low_complexity 4 57 0 345 47 0 0 chr15 24562033 24562076 -61133678 + (TG)n Simple_repeat Simple_repeat 2 44 0 993 298 26 61 chr15 24562473 24562930 -61132824 - L2 LINE L2 0 3313 2873 320 235 0 82 chr15 24562933 24562966 -61132788 - L2 LINE L2 -611 2703 2669 1937 165 58 3 chr15 24562966 24563312 -61132442 - MLT1A1 LTR MaLR 0 365 1 320 235 0 82 chr15 24563312 24563376 -61132378 - L2 LINE L2 -645 2669 2614 457 303 152 0 chr15 24563383 24563528 -61132226 - L2 LINE L2 -1734 1580 1414 3189 291 65 22 chr15 24563537 24564645 -61131109 - L2 LINE L2 -2134 1180 25 23 33 0 0 chr15 24566533 24566563 -61129191 + AT_rich Low_complexity Low_complexity 1 30 0 492 32 0 0 chr15 24566806 24566868 -61128886 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2974 173 85 44 chr15 24569348 24570104 -61125650 - LTR48 LTR ERV1 0 787 1 768 122 0 0 chr15 24570303 24570410 -61125344 - AluSg/x SINE Alu -10 300 194 599 241 15 15 chr15 24570803 24570936 -61124818 - FLAM_A SINE Alu 0 133 1 180 304 0 0 chr15 24572247 24572293 -61123461 + MIR SINE MIR 72 117 -145 1557 181 34 24 chr15 24573119 24573412 -61122342 + AluSx SINE Alu 1 296 -16 569 153 21 21 chr15 24573543 24573687 -61122067 + GA-rich Low_complexity Low_complexity 1 144 0 374 283 147 8 chr15 24573822 24573979 -61121775 + MIR SINE MIR 21 192 -57 27 29 0 0 chr15 24574376 24574410 -61121344 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 24575104 24575127 -61120627 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 24575896 24575929 -61119825 + AT_rich Low_complexity Low_complexity 1 33 0 233 245 0 53 chr15 24577119 24577213 -61118541 + L1MC4 LINE L1 6615 6703 -1339 201 161 0 0 chr15 24577221 24577252 -61118502 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 266 229 86 0 chr15 24577653 24577723 -61118031 - L2 LINE L2 -1 3271 3196 29 0 0 0 chr15 24577959 24577988 -61117766 + AT_rich Low_complexity Low_complexity 1 29 0 229 238 84 105 chr15 24580674 24580743 -61115011 + MLT1I LTR MaLR 270 339 -70 2242 125 0 0 chr15 24580743 24581047 -61114707 + AluSq SINE Alu 1 304 -9 229 238 84 105 chr15 24581047 24581120 -61114634 + MLT1I LTR MaLR 339 409 0 27 49 0 0 chr15 24581148 24581189 -61114565 + AT_rich Low_complexity Low_complexity 1 41 0 1563 189 32 48 chr15 24581285 24581597 -61114157 + AluJb SINE Alu 1 307 -5 310 175 31 21 chr15 24581597 24581694 -61114060 + GA-rich Low_complexity Low_complexity 2 99 0 353 350 0 6 chr15 24581795 24581952 -61113802 + AluJb SINE Alu 140 295 -7 264 149 0 0 chr15 24581965 24582012 -61113742 + (GGGAA)n Simple_repeat Simple_repeat 5 51 0 1298 278 90 2 chr15 24582952 24583352 -61112402 + L2 LINE L2 2310 2744 -570 494 336 7 0 chr15 24583464 24583610 -61112144 + L2 LINE L2 3167 3313 0 723 271 128 40 chr15 24587836 24588384 -61107370 + MLT1G LTR MaLR 1 553 -2 22 0 0 0 chr15 24589320 24589342 -61106412 + AT_rich Low_complexity Low_complexity 1 22 0 2369 180 52 5 chr15 24589347 24590047 -61105707 - LTR1B LTR ERV1 -54 772 1 3401 189 41 53 chr15 24591913 24592721 -61103033 + MER21B LTR ERV1 66 863 0 198 186 23 0 chr15 24593205 24593248 -61102506 + L2 LINE L2 3267 3310 -3 254 194 102 41 chr15 24593845 24593943 -61101811 + Charlie7 DNA MER1_type 46 149 -2463 215 252 119 70 chr15 24595408 24595551 -61100203 - MIR3 SINE MIR -8 200 51 343 321 19 9 chr15 24596598 24596704 -61099050 + L1ME1 LINE L1 5963 6069 -97 261 206 0 0 chr15 24596705 24596768 -61098986 + L1MB8 LINE L1 6107 6169 -9 403 304 61 37 chr15 24597160 24597374 -61098380 + MIR SINE MIR 19 235 -27 23 0 0 0 chr15 24597459 24597482 -61098272 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 24598070 24598102 -61097652 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 24599438 24599460 -61096294 + (CA)n Simple_repeat Simple_repeat 1 22 0 646 309 57 4 chr15 24599677 24599907 -61095847 + MIR SINE MIR 13 254 -8 240 35 0 0 chr15 24599908 24599937 -61095817 + (TTA)n Simple_repeat Simple_repeat 1 29 0 563 250 7 33 chr15 24600590 24600742 -61095012 + MER69 DNA AcHobo 1 148 -2378 236 258 30 0 chr15 24600857 24600923 -61094831 - MIR SINE MIR -15 247 180 986 187 109 7 chr15 24601093 24601376 -61094378 + Charlie4a DNA MER1_type 16 327 -181 3071 265 89 25 chr15 24601399 24603086 -61092668 + L1MEc LINE L1 37 1913 -4483 1551 270 33 5 chr15 24603099 24603740 -61092014 + L1MEc LINE L1 2598 3256 -2959 1259 227 23 132 chr15 24603747 24604262 -61091492 + MLT1E LTR MaLR 1 459 -134 290 266 89 103 chr15 24604277 24604491 -61091263 - L2 LINE L2 -802 2512 2302 659 300 66 53 chr15 24605772 24606306 -61089448 + L2 LINE L2 2781 3311 -2 27 0 0 0 chr15 24606399 24606426 -61089328 + AT_rich Low_complexity Low_complexity 1 27 0 199 208 75 0 chr15 24607157 24607210 -61088544 + L2 LINE L2 3205 3261 -11 1194 205 108 55 chr15 24608517 24608990 -61086764 - MLT1D LTR MaLR 0 505 8 200 310 60 20 chr15 24608996 24609096 -61086658 + MIR SINE MIR 85 188 -74 230 250 0 0 chr15 24609922 24609966 -61085788 + L2 LINE L2 3252 3295 -18 204 250 0 0 chr15 24609990 24610034 -61085720 + L2 LINE L2 3219 3262 -10 2012 130 138 5 chr15 24610322 24610700 -61085054 + MSTA LTR MaLR 1 428 0 3951 157 17 39 chr15 24610839 24611561 -61084193 - L1MA9 LINE L1 0 6312 5609 1853 163 0 13 chr15 24611561 24611862 -61083892 - AluSx SINE Alu -15 297 1 3951 157 17 39 chr15 24611862 24611961 -61083793 - L1MA9 LINE L1 -703 5609 5509 207 258 23 109 chr15 24612691 24612819 -61082935 + MIR SINE MIR 65 181 -81 243 103 0 0 chr15 24612997 24613036 -61082718 + (TG)n Simple_repeat Simple_repeat 2 40 0 738 199 0 7 chr15 24613949 24614095 -61081659 - MER97b DNA MER1_type? -874 179 35 483 100 0 0 chr15 24614133 24614203 -61081551 + (TG)n Simple_repeat Simple_repeat 2 71 0 277 319 52 26 chr15 24614447 24614563 -61081191 - L2 LINE L2 -2 3311 3193 413 248 204 8 chr15 24614826 24615076 -61080678 + MER113 DNA MER1_type? 187 485 -36 276 30 0 0 chr15 24616739 24616772 -61078982 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chr15 24616771 24616808 -61078946 + (CA)n Simple_repeat Simple_repeat 1 37 0 234 227 30 15 chr15 24616808 24616874 -61078880 + GA-rich Low_complexity Low_complexity 1 67 0 213 304 27 80 chr15 24617128 24617240 -61078514 - MIR SINE MIR -81 127 22 467 269 32 13 chr15 24619802 24619958 -61075796 + MLT1I LTR MaLR 244 402 -7 2356 98 0 0 chr15 24621011 24621308 -61074446 + AluSx SINE Alu 1 297 -15 500 124 31 0 chr15 24621308 24621405 -61074349 + GA-rich Low_complexity Low_complexity 1 100 0 5543 146 45 6 chr15 24671747 24673208 -61022546 - L1MA4 LINE L1 -169 6131 4601 3150 135 73 40 chr15 24673214 24673820 -61021934 + L1 LINE L1 3925 4550 -1596 329 302 16 56 chr15 24673823 24673949 -61021805 + MIR SINE MIR 77 197 -65 387 252 187 32 chr15 24674112 24674267 -61021487 - MER5A DNA MER1_type -1 188 10 219 288 106 62 chr15 24675098 24675324 -61020430 + L2 LINE L2 2833 3068 -204 745 295 85 44 chr15 24677863 24678242 -61017512 + L1ME4a LINE L1 5513 5922 -199 2309 241 87 22 chr15 24678242 24678830 -61016924 - MLT1E2 LTR MaLR 0 626 1 745 295 85 44 chr15 24678830 24678993 -61016761 + L1ME4a LINE L1 5922 6077 -44 681 269 56 32 chr15 24680489 24680738 -61015016 - MIR SINE MIR 0 262 8 219 224 0 90 chr15 24680742 24680809 -61014945 + L2 LINE L2 1351 1411 -1903 182 316 98 53 chr15 24681097 24681230 -61014524 + L2 LINE L2 2926 3064 -208 277 289 0 0 chr15 24681399 24681451 -61014303 - L2 LINE L2 -20 3252 3201 331 309 119 22 chr15 24681515 24681735 -61014019 - MIR SINE MIR -2 260 21 397 224 0 31 chr15 24684365 24684463 -61011291 + MIR3 SINE MIR 106 200 -8 516 327 118 9 chr15 24684803 24685014 -61010740 - MIR SINE MIR -8 254 21 467 268 36 30 chr15 24685114 24685282 -61010472 - MIR SINE MIR -34 228 60 2186 109 0 7 chr15 24685292 24685585 -61010169 - AluSx SINE Alu -21 291 1 410 284 45 32 chr15 24685713 24685868 -61009886 - L2 LINE L2 -202 3070 2914 1000 178 59 50 chr15 24686550 24686809 -61008945 + MLT1C LTR MaLR 1 256 -134 218 181 153 14 chr15 24687402 24687474 -61008280 - MIR SINE MIR -1 261 180 208 336 29 10 chr15 24687698 24687802 -61007952 - L2 LINE L2 -48 3265 3160 373 213 38 0 chr15 24688304 24688384 -61007370 + MER5A DNA MER1_type 3 85 -104 25 0 0 0 chr15 24688858 24688883 -61006871 + AT_rich Low_complexity Low_complexity 1 25 0 335 314 19 0 chr15 24688964 24689069 -61006685 + MIR3 SINE MIR 75 181 -27 329 312 26 45 chr15 24692497 24692651 -61003103 + L2 LINE L2 3163 3313 0 5976 108 16 4 chr15 24692970 24694959 -61000795 + L1PA15 LINE L1 4167 6165 0 432 0 0 0 chr15 24695091 24695139 -61000615 + (CA)n Simple_repeat Simple_repeat 1 48 0 450 358 55 9 chr15 24695867 24696085 -60999669 + MIR SINE MIR 17 244 -18 1856 211 31 56 chr15 24697392 24697909 -60997845 + MLT1D LTR MaLR 1 504 -1 285 29 0 0 chr15 24698834 24698868 -60996886 + (TC)n Simple_repeat Simple_repeat 1 34 0 * 489 17 0 0 chr15 24698867 24698925 -60996829 + (CA)n Simple_repeat Simple_repeat 1 58 0 1158 178 19 14 chr15 24699105 24699319 -60996435 - MER20 DNA MER1_type -4 215 1 617 63 0 0 chr15 24699636 24699715 -60996039 - MADE1 DNA Mariner 0 80 2 207 139 0 0 chr15 24700201 24700237 -60995517 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 244 245 71 61 chr15 24700268 24700366 -60995388 + MER5A DNA MER1_type 2 100 -89 341 235 226 0 chr15 24700547 24700662 -60995092 - MIR SINE MIR -30 232 92 379 324 42 0 chr15 24701077 24701219 -60994535 + MLT1K LTR MaLR 31 178 -410 438 283 17 23 chr15 24701352 24701529 -60994225 + MLT1K LTR MaLR 378 553 -35 779 235 26 56 chr15 24702277 24702468 -60993286 - MIR SINE MIR 0 262 78 468 0 0 0 chr15 24702468 24702520 -60993234 + (TA)n Simple_repeat Simple_repeat 1 52 0 779 235 26 56 chr15 24702520 24702562 -60993192 - MIR SINE MIR -184 78 36 466 287 122 8 chr15 24702570 24702777 -60992977 + MIR SINE MIR 11 237 -25 267 31 0 0 chr15 24703515 24703547 -60992207 + (TG)n Simple_repeat Simple_repeat 2 33 0 2349 59 21 0 chr15 24703964 24704253 -60991501 - AluY SINE Alu -16 295 1 295 306 0 10 chr15 24704304 24704402 -60991352 + CT-rich Low_complexity Low_complexity 4 100 0 215 301 14 0 chr15 24705954 24706027 -60989727 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 1253 300 75 25 chr15 24706223 24707172 -60988582 - L1ME3A LINE L1 -230 5940 4906 1412 181 55 78 chr15 24707172 24707571 -60988183 - MLT1B LTR MaLR 0 390 1 1253 300 75 25 chr15 24707571 24707982 -60987772 - L1ME3A LINE L1 -1264 4906 4517 262 224 24 0 chr15 24708011 24708096 -60987658 + CT-rich Low_complexity Low_complexity 1 87 0 332 312 42 37 chr15 24708506 24708721 -60987033 - L1ME3A LINE L1 -2795 3351 3136 297 297 127 0 chr15 24708745 24708863 -60986891 - MIR SINE MIR -8 254 122 388 254 105 91 chr15 24709250 24709459 -60986295 - MIR SINE MIR -16 246 35 269 297 0 0 chr15 24709481 24709545 -60986209 - L2 LINE L2 0 3313 3250 186 189 0 0 chr15 24710173 24710210 -60985544 + CT-rich Low_complexity Low_complexity 4 40 0 2531 292 59 93 chr15 24710210 24710277 -60985477 + L2 LINE L2 212 280 -3034 2416 109 0 0 chr15 24710277 24710590 -60985164 - AluSq SINE Alu 0 313 1 2531 292 59 93 chr15 24710590 24710977 -60984777 + L2 LINE L2 280 679 -2635 370 216 167 0 chr15 24710977 24711261 -60984493 - FRAM SINE Alu 0 335 35 2531 292 59 93 chr15 24711261 24712222 -60983532 + L2 LINE L2 679 1677 -1637 678 263 75 93 chr15 24712660 24713089 -60982665 + L2 LINE L2 1686 2106 -1208 788 113 11 43 chr15 24713196 24713382 -60982372 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 809 168 10 10 chr15 24713382 24713680 -60982074 + CT-rich Low_complexity Low_complexity 1 298 0 325 275 74 69 chr15 24713765 24713954 -60981800 + L1ME LINE L1 5575 5764 -357 220 329 0 0 chr15 24714554 24714627 -60981127 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 363 89 0 0 chr15 24714627 24714683 -60981071 + (CA)n Simple_repeat Simple_repeat 2 57 0 460 271 15 23 chr15 24714683 24714816 -60980938 + L2 LINE L2 3182 3313 0 226 369 117 0 chr15 24715814 24715917 -60979837 + MIR SINE MIR 30 144 -64 184 320 82 31 chr15 24716950 24717047 -60978707 + L2 LINE L2 3185 3286 -27 1555 158 28 111 chr15 24717047 24717445 -60978309 + MLT1A1 LTR MaLR 1 365 0 2104 125 51 3 chr15 24720136 24720489 -60975265 - L1MA4 LINE L1 -11 6289 5920 180 176 0 0 chr15 24720554 24720588 -60975166 + GA-rich Low_complexity Low_complexity 4 37 0 285 289 58 16 chr15 24720644 24720765 -60974989 + L1MC4 LINE L1 7774 7899 -143 685 272 103 28 chr15 24720943 24721303 -60974451 - L1ME4a LINE L1 -273 5848 5462 440 304 53 37 chr15 24721690 24722012 -60973742 - LTR16C LTR ERVL -81 410 84 429 137 0 95 chr15 24723160 24723255 -60972499 - AluJ/FLAM SINE Alu -222 90 5 2266 226 61 5 chr15 24723266 24723893 -60971861 + L1MC4 LINE L1 7238 7899 -143 363 105 0 0 chr15 24723955 24724012 -60971742 + (CA)n Simple_repeat Simple_repeat 1 57 0 371 303 103 13 chr15 24724731 24724886 -60970868 - MIR3 SINE MIR -27 181 13 183 80 0 0 chr15 24724914 24724939 -60970815 + (A)n Simple_repeat Simple_repeat 1 25 0 1142 172 38 0 chr15 24725077 24725286 -60970468 - MER20 DNA MER1_type -2 217 1 308 315 253 0 chr15 24725379 24725557 -60970197 + MIR SINE MIR 15 237 -25 300 188 0 0 chr15 24725891 24725955 -60969799 - MER69 DNA AcHobo -80 2446 2383 321 227 0 0 chr15 24726088 24726154 -60969600 - MER69 DNA AcHobo -110 67 2 1012 78 0 0 chr15 24726478 24726607 -60969147 - AluY SINE Alu -3 308 180 30 69 0 0 chr15 24727294 24727352 -60968402 + AT_rich Low_complexity Low_complexity 1 58 0 443 234 186 21 chr15 24728256 24728401 -60967353 + MER5A DNA MER1_type 21 189 0 264 303 81 10 chr15 24728654 24728753 -60967001 - L2 LINE L2 -222 3091 2986 319 345 0 73 chr15 24728763 24728954 -60966800 + L2 LINE L2 2924 3100 -172 394 324 74 56 chr15 24729022 24729454 -60966300 - LTR16A LTR ERVL -3 447 8 21 36 0 0 chr15 24729944 24729972 -60965782 + AT_rich Low_complexity Low_complexity 1 28 0 378 216 117 18 chr15 24730181 24730292 -60965462 - MER5C DNA MER1_type -202 122 1 2577 46 0 0 chr15 24730752 24731056 -60964698 - AluY SINE Alu -7 304 1 599 0 14 0 chr15 24731437 24731508 -60964246 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 696 288 27 23 chr15 24734621 24734840 -60960914 - MIR SINE MIR -41 221 2 282 73 0 0 chr15 24734987 24735028 -60960726 + (CA)n Simple_repeat Simple_repeat 2 42 0 329 0 24 0 chr15 24735594 24735635 -60960119 + (TC)n Simple_repeat Simple_repeat 1 42 0 396 0 0 0 chr15 24735640 24735684 -60960070 + (CA)n Simple_repeat Simple_repeat 2 45 0 731 212 73 0 chr15 24735699 24735864 -60959890 + MER45A DNA AcHobo 1 177 -1 2421 166 35 39 chr15 24736367 24736438 -60959316 - L1MB7 LINE L1 0 6184 6114 216 0 0 0 chr15 24736438 24736462 -60959292 + (TG)n Simple_repeat Simple_repeat 2 25 0 2421 166 35 39 chr15 24736462 24736794 -60958960 - L1MB7 LINE L1 -70 6114 5781 1730 169 115 3 chr15 24736794 24737150 -60958604 + MSTD LTR MaLR 1 396 0 2421 166 35 39 chr15 24737150 24737313 -60958441 - L1MB7 LINE L1 -403 5781 5619 2165 123 3 19 chr15 24737916 24738336 -60957418 - AluSx SINE Alu 0 415 1 331 160 0 0 chr15 24738337 24738387 -60957367 - MER5A DNA MER1_type -114 75 26 1284 88 47 5 chr15 24738529 24738721 -60957033 + MER30 DNA MER1_type 1 200 -30 358 304 108 19 chr15 24739225 24739383 -60956371 - MER5A DNA MER1_type 0 189 18 198 314 131 7 chr15 24739477 24739614 -60956140 + MIR SINE MIR 109 262 0 223 284 45 0 chr15 24740985 24741052 -60954702 + MIR SINE MIR 59 128 -134 365 209 0 0 chr15 24741167 24741234 -60954520 + MER103 DNA DNA 55 121 -45 184 170 19 75 chr15 24741929 24741982 -60953772 - L2 LINE L2 -669 2645 2596 1292 197 6 15 chr15 24743322 24743832 -60951922 - L1MB8 LINE L1 0 6178 5636 459 316 57 18 chr15 24743874 24744313 -60951441 - L1ME LINE L1 -348 5822 5352 365 94 0 0 chr15 24744362 24744415 -60951339 - MADE1 DNA Mariner -25 55 3 228 300 30 70 chr15 24744470 24744870 -60950884 - L1ME LINE L1 -913 5233 4850 315 0 0 0 chr15 24744870 24744905 -60950849 + (TG)n Simple_repeat Simple_repeat 2 36 0 559 155 20 20 chr15 24744905 24745053 -60950701 + GA-rich Low_complexity Low_complexity 3 150 0 342 200 103 113 chr15 24745055 24745198 -60950556 - L1ME LINE L1 -1317 4829 4687 2298 121 0 0 chr15 24745198 24745503 -60950251 - AluSx SINE Alu -6 306 2 342 200 103 113 chr15 24745503 24745554 -60950200 - L1ME LINE L1 -1459 4687 4637 2215 121 3 0 chr15 24745829 24746134 -60949620 - AluSx SINE Alu -6 306 1 358 280 73 31 chr15 24746226 24746446 -60949308 + L1M4c LINE L1 2287 2519 -3863 733 313 77 20 chr15 24746476 24746827 -60948927 + LTR16B LTR ERVL 1 371 -93 2106 129 35 59 chr15 24746910 24747283 -60948471 + THE1B LTR MaLR 1 364 0 10953 90 16 3 chr15 24747283 24748833 -60946921 + THE1B-int LTR MaLR 1 1569 -11 2022 141 41 39 chr15 24748837 24749200 -60946554 + THE1B LTR MaLR 1 364 0 502 278 72 14 chr15 24749225 24749434 -60946320 + L1M4c LINE L1 2546 2766 -3616 251 257 248 10 chr15 24749711 24749812 -60945942 - L1MEd LINE L1 -5493 626 502 462 277 9 0 chr15 24749831 24749943 -60945811 + MER81 DNA DNA 2 114 0 299 313 80 30 chr15 24750160 24750524 -60945230 - L1MEd LINE L1 -5736 383 2 583 288 61 74 chr15 24751496 24751656 -60944098 + MLT1L LTR MaLR 133 293 -322 2171 126 0 3 chr15 24751656 24751950 -60943804 + AluSc SINE Alu 1 293 -16 583 288 61 74 chr15 24751950 24752278 -60943476 + MLT1L LTR MaLR 293 615 0 28 0 0 0 chr15 24754075 24754103 -60941651 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 24754621 24754653 -60941101 + AT_rich Low_complexity Low_complexity 1 32 0 222 105 0 0 chr15 24756115 24756153 -60939601 + (CAT)n Simple_repeat Simple_repeat 3 40 0 508 192 0 210 chr15 24756165 24756394 -60939360 - MIR SINE MIR -36 226 46 1065 197 47 0 chr15 24756682 24756936 -60938818 - L1MD3 LINE L1 0 7995 7730 3088 48 20 0 chr15 24756944 24757337 -60938417 - L1PA7 LINE L1 0 6154 5754 6960 82 1 1 chr15 24757338 24758334 -60937420 - L1P LINE L1 -1451 4695 3700 4671 88 12 16 chr15 24758334 24758523 -60937231 + L1P LINE L1 2941 3129 -3017 2476 81 0 7 chr15 24758523 24758832 -60936922 + AluY SINE Alu 1 307 -4 4671 88 12 16 chr15 24758832 24759382 -60936372 + L1P LINE L1 3129 3677 -2469 2044 140 0 0 chr15 24759393 24759721 -60936033 + MER47A DNA MER2_type 39 366 0 496 187 19 0 chr15 24760147 24760254 -60935500 + MER57A LTR ERV1 295 403 0 198 0 0 0 chr15 24760675 24760697 -60935057 + (T)n Simple_repeat Simple_repeat 1 22 0 2320 116 3 18 chr15 24761638 24762018 -60933736 - L1MA2 LINE L1 0 6304 5931 429 253 32 26 chr15 24762087 24762250 -60933504 - MIR3 SINE MIR -34 174 10 839 244 119 35 chr15 24762817 24763175 -60932579 - L1ME3A LINE L1 -27 6143 5750 1993 129 34 45 chr15 24763175 24763554 -60932200 + THE1C LTR MaLR 1 375 0 839 244 119 35 chr15 24763554 24763572 -60932182 - L1ME3A LINE L1 -420 5750 5735 318 106 0 0 chr15 24763749 24763796 -60931958 + (TG)n Simple_repeat Simple_repeat 2 48 0 1679 224 143 27 chr15 24764429 24765085 -60930669 - MER50 LTR ERV1 -2 732 1 24 32 0 0 chr15 24765663 24765694 -60930060 + AT_rich Low_complexity Low_complexity 1 31 0 222 62 0 0 chr15 24766599 24766631 -60929123 + (TG)n Simple_repeat Simple_repeat 1 32 0 269 140 18 0 chr15 24766631 24766688 -60929066 + GA-rich Low_complexity Low_complexity 2 59 0 273 318 47 62 chr15 24767241 24767433 -60928321 - MER5A DNA MER1_type 0 189 1 1502 230 3 0 chr15 24767551 24767842 -60927912 - AluJo SINE Alu -11 301 10 289 315 62 0 chr15 24769198 24769328 -60926426 + MER102a DNA MER1_type 174 311 -19 2094 169 0 3 chr15 24769580 24769917 -60925837 - MER1B DNA MER1_type 0 337 2 496 341 45 100 chr15 24770107 24770899 -60924855 + L2 LINE L2 1788 2536 -778 3144 169 45 8 chr15 24775034 24775686 -60920068 - L1MC2 LINE L1 -8 6336 5661 200 297 31 0 chr15 24775795 24775859 -60919895 + L2 LINE L2 3207 3272 0 1203 181 166 21 chr15 24775885 24776063 -60919691 + MLT1B LTR MaLR 1 152 -238 276 30 0 0 chr15 24776063 24776096 -60919658 + (TG)n Simple_repeat Simple_repeat 2 34 0 1203 181 166 21 chr15 24776096 24776254 -60919500 + MLT1B LTR MaLR 152 386 -4 254 280 68 23 chr15 24776434 24776566 -60919188 - L1MC2 LINE L1 -452 5669 5532 222 37 0 0 chr15 24776983 24777010 -60918744 + (TG)n Simple_repeat Simple_repeat 2 28 0 325 267 11 11 chr15 24777322 24777412 -60918342 + MIR3 SINE MIR 119 208 0 424 290 5 82 chr15 24777500 24777707 -60918047 - MIR3 SINE MIR -11 197 7 522 297 115 38 chr15 24778825 24779034 -60916720 - MIR SINE MIR -25 237 13 832 289 60 53 chr15 24779063 24779517 -60916237 + LTR16A1 LTR ERVL 1 457 0 235 338 13 0 chr15 24779538 24779615 -60916139 - MLT1K LTR MaLR -189 399 322 190 274 226 0 chr15 24780222 24780328 -60915426 - MIR SINE MIR -75 187 58 1766 205 13 55 chr15 24781100 24781481 -60914273 - MLT1A1 LTR MaLR 0 365 1 1027 234 22 0 chr15 24781583 24781810 -60913944 - MLT1G LTR MaLR -5 585 354 237 245 0 0 chr15 24782390 24782443 -60913311 - MIR SINE MIR -75 133 81 6664 70 7 12 chr15 24782463 24784097 -60911657 + L1PA7 LINE L1 4511 6153 -1 21 57 0 0 chr15 24784267 24784302 -60911452 + AT_rich Low_complexity Low_complexity 1 35 0 892 251 111 36 chr15 24784302 24784805 -60910949 - L1ME4a LINE L1 -11 6110 5570 186 225 0 0 chr15 24784924 24784964 -60910790 - L3b LINE CR1 -2 1581 1542 2167 184 23 28 chr15 24785111 24785541 -60910213 + MSTB1 LTR MaLR 1 428 -4 1218 242 85 32 chr15 24785785 24786186 -60909568 - MLT1D LTR MaLR -42 463 42 1799 153 3 19 chr15 24786187 24786495 -60909259 + AluSp SINE Alu 1 303 -10 1677 149 69 36 chr15 24786937 24787300 -60908454 - THE1C LTR MaLR 0 375 1 834 214 12 0 chr15 24787674 24787847 -60907907 + MER58B DNA MER1_type 167 341 0 532 202 22 13 chr15 24787877 24788106 -60907648 + CT-rich Low_complexity Low_complexity 1 231 0 227 301 0 11 chr15 24788112 24788205 -60907549 - MER58C DNA MER1_type -70 145 54 519 285 51 95 chr15 24788261 24788693 -60907061 - MLT1K LTR MaLR 0 588 176 534 209 209 0 chr15 24788788 24788936 -60906818 + MER5A DNA MER1_type 11 189 0 225 274 73 24 chr15 24789079 24789203 -60906551 - MLT1L LTR MaLR -2 613 484 291 297 65 26 chr15 24789208 24789363 -60906391 - MLT1L LTR MaLR -342 273 113 476 272 68 5 chr15 24790548 24790732 -60905022 - MIR SINE MIR -19 243 50 250 213 43 0 chr15 24791026 24791073 -60904681 + L2 LINE L2 3229 3277 -36 219 36 0 0 chr15 24791118 24791146 -60904608 + (TC)n Simple_repeat Simple_repeat 1 28 0 1811 186 50 67 chr15 24791200 24791678 -60904076 - MLT2B1 LTR ERVL -50 470 1 21 0 0 0 chr15 24791751 24791772 -60903982 + AT_rich Low_complexity Low_complexity 1 21 0 215 293 165 18 chr15 24791812 24791976 -60903778 + MIR SINE MIR 74 261 -1 323 245 119 46 chr15 24793433 24793584 -60902170 + MIR SINE MIR 27 188 -74 256 310 138 0 chr15 24793825 24793912 -60901842 - L2 LINE L2 -12 3260 3162 27 29 0 0 chr15 24794947 24794981 -60900773 + AT_rich Low_complexity Low_complexity 1 34 0 1613 170 0 17 chr15 24794983 24795272 -60900482 - AluJo SINE Alu -28 284 1 1139 267 77 45 chr15 24796205 24796969 -60898785 + HAL1 LINE L1 887 1675 -832 474 328 18 93 chr15 24797027 24797478 -60898276 - LTR67 LTR ERVL -136 421 5 2602 71 0 0 chr15 24798709 24799020 -60896734 - AluY SINE Alu 0 311 1 2005 136 3 10 chr15 24799387 24799702 -60896052 - AluSx SINE Alu 0 312 1 756 340 96 52 chr15 24800136 24801054 -60894700 + L2 LINE L2 2344 3312 -1 1226 227 28 13 chr15 24801323 24801640 -60894114 - MER33 DNA MER1_type -2 322 1 1378 218 99 26 chr15 24801661 24802005 -60893749 - MLT1A2 LTR MaLR -4 370 2 469 308 190 4 chr15 24802142 24802405 -60893349 + L3 LINE CR1 1261 1572 -5 21 0 0 0 chr15 24802749 24802770 -60892984 + AT_rich Low_complexity Low_complexity 1 21 0 1232 123 0 0 chr15 24802771 24802941 -60892813 - FRAM SINE Alu -9 167 1 2443 81 0 3 chr15 24803381 24803688 -60892066 - AluY SINE Alu -5 306 1 777 154 6 12 chr15 24804775 24804944 -60890810 + CT-rich Low_complexity Low_complexity 3 170 0 1807 184 57 25 chr15 24808517 24808870 -60886884 - MLT1A1 LTR MaLR -1 364 1 1590 234 33 70 chr15 24810811 24811265 -60884489 - MLT1H LTR MaLR -112 437 1 1109 263 76 66 chr15 24813667 24814180 -60881574 + MER115 DNA AcHobo 100 617 -76 952 151 0 0 chr15 24814180 24814319 -60881435 - FLAM_C SINE Alu -4 139 1 2231 247 64 35 chr15 24814814 24815104 -60880650 - L1ME1 LINE L1 -5 6161 5872 409 334 123 20 chr15 24815104 24815511 -60880243 - L1PA3 LINE L1 -275 5880 5432 2326 132 35 24 chr15 24815787 24816158 -60879596 + THE1C LTR MaLR 1 375 0 664 301 99 18 chr15 24816319 24816701 -60879053 - LTR16C LTR ERVL 0 491 79 198 298 0 18 chr15 24817140 24817197 -60878557 - L2 LINE L2 -15 3298 3243 362 192 41 0 chr15 24818306 24818379 -60877375 - L1MC4 LINE L1 -1 8041 7966 * 2652 196 41 76 chr15 24818376 24818768 -60876986 - L1MC4 LINE L1 -443 7599 7246 6546 111 20 0 chr15 24818768 24820189 -60875565 - L1PA10 LINE L1 -3 6165 4728 2652 196 41 76 chr15 24820189 24820557 -60875197 - L1MC4 LINE L1 -796 7246 6866 243 0 0 0 chr15 24820601 24820628 -60875126 + (TG)n Simple_repeat Simple_repeat 2 28 0 662 216 11 13 chr15 24820639 24820832 -60874922 - L1MC4a LINE L1 -1207 6601 6445 933 278 107 42 chr15 24821252 24821634 -60874120 - MLT1I LTR MaLR 0 409 3 268 239 100 30 chr15 24821922 24822251 -60873503 - L1ME4a LINE L1 -2 6119 5731 1324 263 91 21 chr15 24822332 24822807 -60872947 + LTR33A LTR ERVL 13 520 -3 326 267 36 61 chr15 24823362 24823527 -60872227 + L1MEd LINE L1 2 162 -5957 1142 133 61 10 chr15 24823611 24823807 -60871947 + MER2 DNA MER2_type 1 206 -139 21 36 0 0 chr15 24823837 24823865 -60871889 + AT_rich Low_complexity Low_complexity 1 28 0 649 206 129 46 chr15 24824950 24825144 -60870610 - MER63A DNA MER1_type 0 210 1 22 0 0 0 chr15 24825232 24825254 -60870500 + AT_rich Low_complexity Low_complexity 1 22 0 3079 222 66 29 chr15 24825322 24825614 -60870140 + L1ME2 LINE L1 5119 5399 -765 2578 162 21 23 chr15 24825614 24826041 -60869713 - MSTB LTR MaLR 0 426 1 3079 222 66 29 chr15 24826041 24826681 -60869073 + L1ME2 LINE L1 5399 6101 -63 21 0 0 0 chr15 24826705 24826726 -60869028 + AT_rich Low_complexity Low_complexity 1 21 0 2041 182 28 8 chr15 24827719 24828077 -60867677 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr15 24828679 24828703 -60867051 + AT_rich Low_complexity Low_complexity 1 24 0 186 351 0 0 chr15 24830083 24830140 -60865614 - L2 LINE L2 -13 3259 3203 306 0 0 0 chr15 24830880 24830914 -60864840 + (TG)n Simple_repeat Simple_repeat 2 35 0 2668 171 98 34 chr15 24831950 24832482 -60863272 - MLT1F1 LTR MaLR 0 567 2 219 139 0 0 chr15 24832544 24832580 -60863174 + (GAA)n Simple_repeat Simple_repeat 1 36 0 1097 280 64 33 chr15 24834492 24834881 -60860873 + MLT1I LTR MaLR 6 406 -3 243 0 0 0 chr15 24835703 24835730 -60860024 + (CA)n Simple_repeat Simple_repeat 2 28 0 290 213 205 25 chr15 24836751 24836873 -60858881 - MER103 DNA DNA -7 159 16 199 324 99 9 chr15 24837073 24837184 -60858570 + MIR SINE MIR 96 216 -46 294 363 50 25 chr15 24837634 24837835 -60857919 - MIR3 SINE MIR 0 208 3 702 268 73 19 chr15 24838043 24838395 -60857359 - LTR16A1 LTR ERVL -4 453 12 375 247 11 21 chr15 24839097 24839190 -60856564 - MIR3 SINE MIR -50 158 67 365 225 12 0 chr15 24839261 24839341 -60856413 + MLT1F LTR MaLR 124 204 -338 1586 244 113 4 chr15 24840707 24841157 -60854597 + MLT1F LTR MaLR 44 542 0 2130 133 0 3 chr15 24841239 24841539 -60854215 - AluSx SINE Alu -13 299 1 578 335 24 42 chr15 24842160 24842447 -60853307 + MLT1K LTR MaLR 92 373 -215 227 321 12 12 chr15 24842474 24842558 -60853196 + MLT1K LTR MaLR 471 554 -34 35 54 0 0 chr15 24842866 24842922 -60852832 + AT_rich Low_complexity Low_complexity 1 56 0 771 237 75 6 chr15 24842995 24843168 -60852586 - MIR SINE MIR -76 186 2 2429 90 0 0 chr15 24843219 24843529 -60852225 + AluSg SINE Alu 1 310 0 259 216 82 0 chr15 24843797 24843894 -60851860 + Zaphod DNA AcHobo 886 990 -3041 * 1264 206 120 35 chr15 24843885 24844284 -60851470 + Zaphod DNA AcHobo 3590 4022 -9 30 0 0 0 chr15 24844399 24844429 -60851325 + AT_rich Low_complexity Low_complexity 1 30 0 1453 116 14 10 chr15 24844453 24844660 -60851094 - AluSx SINE Alu -102 210 3 232 235 20 31 chr15 24844674 24844772 -60850982 + HAL1b LINE L1 922 1018 -330 22 0 0 0 chr15 24844832 24844854 -60850900 + AT_rich Low_complexity Low_complexity 1 22 0 796 181 16 66 chr15 24846921 24846961 -60848793 - MER5B DNA MER1_type -4 174 134 1673 203 0 20 chr15 24846961 24847267 -60848487 - AluJo SINE Alu -12 300 1 796 181 16 66 chr15 24847267 24847408 -60848346 - MER5B DNA MER1_type -44 134 2 1087 161 16 0 chr15 24847417 24847603 -60848151 + MER5A DNA MER1_type 1 189 0 696 242 26 46 chr15 24847709 24847903 -60847851 + MIR SINE MIR 20 209 -53 721 199 0 7 chr15 24848533 24848669 -60847085 - MIR SINE MIR -66 196 62 355 205 295 0 chr15 24849041 24849153 -60846601 + MER5A DNA MER1_type 26 170 -19 201 298 58 117 chr15 24849044 24849215 -60846539 - MER5A DNA MER1_type -16 173 13 * 528 293 139 60 chr15 24849984 24850841 -60844913 + L2 LINE L2 2309 3237 -76 2179 117 0 0 chr15 24850928 24851234 -60844520 - AluSx SINE Alu 0 306 1 23 0 0 0 chr15 24851240 24851263 -60844491 + AT_rich Low_complexity Low_complexity 1 23 0 2357 91 0 10 chr15 24851289 24851597 -60844157 + AluSx SINE Alu 1 305 -7 216 0 0 0 chr15 24852280 24852304 -60843450 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1994 253 70 12 chr15 24852318 24852991 -60842763 - L1ME1 LINE L1 -6 6160 5449 275 248 60 111 chr15 24853268 24853385 -60842369 + L2 LINE L2 3137 3247 -25 210 143 0 0 chr15 24853642 24853677 -60842077 + (TA)n Simple_repeat Simple_repeat 2 36 0 213 213 21 0 chr15 24853678 24853725 -60842029 + (CA)n Simple_repeat Simple_repeat 1 48 0 724 140 21 166 chr15 24853786 24853979 -60841775 - AluJb SINE Alu -17 295 131 216 97 0 0 chr15 24854721 24854752 -60841002 + (TA)n Simple_repeat Simple_repeat 1 31 0 782 221 6 18 chr15 24854872 24855035 -60840719 - FRAM SINE Alu -5 161 1 670 274 201 8 chr15 24855667 24856035 -60839719 + MLT1H1 LTR MaLR 1 439 -116 310 289 116 16 chr15 24857282 24857403 -60838351 + MER94 DNA DNA 1 133 -1 24 0 0 0 chr15 24857546 24857570 -60838184 + AT_rich Low_complexity Low_complexity 1 24 0 748 264 29 45 chr15 24858006 24858248 -60837506 + MIR SINE MIR 17 254 -8 260 281 124 0 chr15 24858522 24858611 -60837143 - L3b LINE CR1 -156 1427 1328 22 0 0 0 chr15 24860524 24860546 -60835208 + AT_rich Low_complexity Low_complexity 1 22 0 361 278 112 76 chr15 24860547 24860770 -60834984 - MIR SINE MIR -3 259 29 1615 146 7 71 chr15 24861860 24862022 -60833732 - AluJo SINE Alu -31 281 145 2447 58 0 3 chr15 24862022 24862317 -60833437 - AluY SINE Alu -16 295 2 1615 146 7 71 chr15 24862317 24862449 -60833305 - AluJo SINE Alu -167 145 6 21 0 0 0 chr15 24863004 24863025 -60832729 + AT_rich Low_complexity Low_complexity 1 21 0 181 73 24 24 chr15 24863211 24863252 -60832502 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 220 271 29 14 chr15 24863455 24863525 -60832229 + C-rich Low_complexity Low_complexity 3 73 0 384 71 0 0 chr15 24863528 24863584 -60832170 + (CA)n Simple_repeat Simple_repeat 2 57 0 248 313 97 78 chr15 24863842 24864225 -60831529 - L2 LINE L2 -65 3248 2859 245 244 89 33 chr15 24865624 24865714 -60830040 + L2 LINE L2 3219 3313 0 790 232 51 118 chr15 24866663 24867143 -60828611 + MLT1H LTR MaLR 73 519 -30 1693 230 74 41 chr15 24867143 24867394 -60828360 + MLT1E2 LTR MaLR 1 242 -384 2171 110 0 32 chr15 24867394 24867704 -60828050 + AluSx SINE Alu 1 300 -12 1693 230 74 41 chr15 24867704 24868066 -60827688 + MLT1E2 LTR MaLR 242 626 0 578 218 45 62 chr15 24868144 24868323 -60827431 - MER5B DNA MER1_type 0 178 3 615 272 79 83 chr15 24868442 24868509 -60827245 - MLT1L LTR MaLR -2 613 547 2048 121 4 0 chr15 24868509 24868819 -60826935 + AluSq SINE Alu 2 312 0 615 272 79 83 chr15 24868819 24869175 -60826579 - MLT1L LTR MaLR -68 547 100 3166 131 46 26 chr15 24870751 24871294 -60824460 - MER41C LTR ERV1 0 554 1 23 33 0 0 chr15 24872436 24872466 -60823288 + AT_rich Low_complexity Low_complexity 1 30 0 417 246 42 0 chr15 24874222 24874340 -60821414 - MER3 DNA MER1_type -86 123 1 246 264 148 71 chr15 24874997 24875152 -60820602 - MIR3 SINE MIR -3 205 39 2067 104 0 21 chr15 24875841 24876121 -60819633 + AluSx SINE Alu 1 274 -38 23 0 0 0 chr15 24877214 24877237 -60818517 + AT_rich Low_complexity Low_complexity 1 23 0 194 0 39 0 chr15 24878609 24878635 -60817119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 384 22 0 0 chr15 24879104 24879149 -60816605 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr15 24881035 24881057 -60814697 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr15 24884534 24884577 -60811177 + AT_rich Low_complexity Low_complexity 1 43 0 180 200 0 0 chr15 24886079 24886119 -60809635 + (TG)n Simple_repeat Simple_repeat 1 40 0 188 267 99 50 chr15 24889424 24889525 -60806229 - MIR SINE MIR -72 190 85 560 343 11 0 chr15 24892523 24892698 -60803056 - MIR3 SINE MIR -11 197 21 450 181 134 8 chr15 24892763 24892890 -60802864 + L1MA10 LINE L1 6183 6325 -9 459 281 41 14 chr15 24893453 24893599 -60802155 + MIR SINE MIR 20 169 -93 22 0 0 0 chr15 24894582 24894604 -60801150 + AT_rich Low_complexity Low_complexity 1 22 0 624 310 24 39 chr15 24894844 24895099 -60800655 + MIR SINE MIR 2 252 -10 279 174 0 43 chr15 24895594 24895686 -60800068 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 940 282 114 37 chr15 24895940 24896254 -60799500 + L1ME LINE L1 529 817 -5444 2259 105 20 0 chr15 24896254 24896558 -60799196 + AluSg SINE Alu 1 310 0 940 282 114 37 chr15 24896558 24897203 -60798551 + L1ME LINE L1 817 1597 -4664 818 206 0 0 chr15 24897256 24897387 -60798367 - FLAM_C SINE Alu -11 132 2 491 330 149 53 chr15 24897882 24898479 -60797275 + L2 LINE L2 866 1404 -1910 2136 123 7 0 chr15 24898479 24898771 -60796983 - AluSx SINE Alu -18 294 1 491 330 149 53 chr15 24898771 24899269 -60796485 + L2 LINE L2 1404 2066 -1248 337 322 92 57 chr15 24899273 24899587 -60796167 + L2 LINE L2 2653 2977 -337 292 271 178 8 chr15 24901006 24901135 -60794619 + MIR3 SINE MIR 10 160 -48 518 361 51 5 chr15 24901898 24902114 -60793640 + MIR SINE MIR 22 247 -15 2138 136 3 0 chr15 24902117 24902426 -60793328 + AluSq SINE Alu 1 310 -3 396 373 40 8 chr15 24902582 24902829 -60792925 + L2 LINE L2 2615 2869 -445 317 292 159 0 chr15 24903043 24903156 -60792598 + L2 LINE L2 3141 3271 -1 21 0 0 0 chr15 24904491 24904512 -60791242 + AT_rich Low_complexity Low_complexity 1 21 0 421 162 27 0 chr15 24905557 24905631 -60790123 + L1MD2 LINE L1 6265 6340 -19 541 256 106 40 chr15 24906036 24906263 -60789491 + MIR SINE MIR 7 248 -14 555 303 37 6 chr15 24906458 24906620 -60789134 + MIR3 SINE MIR 35 201 -7 398 343 7 29 chr15 24907322 24907459 -60788295 + L2 LINE L2 3139 3272 0 25 31 0 0 chr15 24908212 24908244 -60787510 + AT_rich Low_complexity Low_complexity 1 32 0 400 282 113 52 chr15 24909416 24909664 -60786090 + L2 LINE L2 2924 3186 -86 2369 88 10 0 chr15 24909755 24910062 -60785692 - AluSp SINE Alu -3 310 1 256 258 333 8 chr15 24910201 24910321 -60785433 - MIR SINE MIR -91 171 13 2348 94 0 3 chr15 24910951 24911258 -60784496 - AluSc SINE Alu -3 306 1 369 291 171 0 chr15 24911445 24911620 -60784134 + MIR SINE MIR 58 262 0 1272 248 92 41 chr15 24912316 24912775 -60782979 + MLT1G1 LTR MaLR 85 566 -29 3148 60 2 2 chr15 24913047 24913445 -60782309 + L1PA8A LINE L1 5706 6103 -28 340 275 143 68 chr15 24913489 24913979 -60781775 + L1ME4a LINE L1 5415 5933 -188 220 200 36 0 chr15 24915379 24915434 -60780320 + (TTAAA)n Simple_repeat Simple_repeat 3 59 0 235 230 81 58 chr15 24916811 24916898 -60778856 - MIR3 SINE MIR -38 170 82 329 231 15 0 chr15 24916993 24917058 -60778696 - MER45 DNA AcHobo 0 1581 1516 279 153 136 0 chr15 24917049 24917108 -60778646 - MER45 DNA AcHobo -914 126 60 * 204 125 0 0 chr15 24917247 24917279 -60778475 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 368 298 40 0 chr15 24917732 24917856 -60777898 - MIR SINE MIR -32 230 102 927 258 166 26 chr15 24918959 24919350 -60776404 + MLT1L LTR MaLR 163 608 -7 370 281 98 30 chr15 24919360 24919563 -60776191 - MIR SINE MIR -8 254 38 277 266 0 13 chr15 24919618 24919697 -60776057 + (TA)n Simple_repeat Simple_repeat 1 78 0 28 0 0 0 chr15 24921382 24921410 -60774344 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr15 24921416 24921444 -60774310 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 187 344 16 0 chr15 24921458 24921522 -60774232 - L3 LINE CR1 -1 1576 1512 614 246 98 41 chr15 24922353 24922444 -60773310 + MIR SINE MIR 5 89 -173 2194 182 80 31 chr15 24922444 24922922 -60772832 + MLT1D LTR MaLR 1 501 -4 614 246 98 41 chr15 24922922 24923074 -60772680 + MIR SINE MIR 89 262 0 208 322 33 25 chr15 24923270 24923391 -60772363 - MIR SINE MIR -71 137 16 203 250 31 16 chr15 24924011 24924075 -60771679 + MER5A DNA MER1_type 125 189 0 405 333 45 11 chr15 24924093 24924270 -60771484 + MER5A DNA MER1_type 7 189 0 221 255 0 0 chr15 24924662 24924709 -60771045 + MIR SINE MIR 1 47 -215 782 268 25 29 chr15 24924736 24924975 -60770779 - MIR SINE MIR -11 251 14 708 225 54 59 chr15 24924972 24925194 -60770560 + MIR SINE MIR 40 260 -2 * 400 254 9 18 chr15 24925200 24925314 -60770440 + MIR SINE MIR 150 262 0 205 250 162 0 chr15 24926217 24926285 -60769469 - L2 LINE L2 -3 3269 3191 187 129 0 0 chr15 24926750 24926781 -60768973 + L2 LINE L2 3280 3310 -3 360 289 36 129 chr15 24926867 24927255 -60768499 + L2 LINE L2 2921 3272 0 665 355 16 0 chr15 24928477 24928722 -60767032 + MIR SINE MIR 13 261 -1 222 37 0 0 chr15 24931228 24931255 -60764499 + (A)n Simple_repeat Simple_repeat 1 27 0 423 0 0 0 chr15 24933633 24933680 -60762074 + (CA)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr15 24933717 24933745 -60762009 + (CA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr15 24933983 24934003 -60761751 + (CAG)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr15 24934156 24934177 -60761577 + GC_rich Low_complexity Low_complexity 1 21 0 339 291 120 8 chr15 24936545 24936662 -60759092 + L2 LINE L2 3139 3268 -4 213 212 242 0 chr15 24936748 24936814 -60758940 + L2 LINE L2 3190 3271 -1 668 242 65 32 chr15 24937081 24937267 -60758487 - MIR SINE MIR -21 241 50 653 309 15 0 chr15 24937347 24937551 -60758203 + MIR SINE MIR 46 252 -10 231 338 123 32 chr15 24939017 24939171 -60756583 - MIR SINE MIR -75 187 20 2837 0 0 3 chr15 24940181 24940485 -60755269 - AluYa5 SINE Alu -8 303 1 207 69 0 0 chr15 24940904 24940933 -60754821 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr15 24941325 24941349 -60754405 + AT_rich Low_complexity Low_complexity 1 24 0 206 222 0 0 chr15 24941936 24941981 -60753773 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1179 286 98 19 chr15 24942078 24942547 -60753207 - LTR33 LTR ERVL -2 519 14 279 313 96 30 chr15 24942566 24942715 -60753039 - MIR SINE MIR -63 145 23 291 93 0 0 chr15 24944773 24944816 -60750938 + (GA)n Simple_repeat Simple_repeat 1 43 0 197 222 241 0 chr15 24946431 24946485 -60749269 + L2 LINE L2 3244 3310 -3 1834 137 27 27 chr15 24946784 24947076 -60748678 - AluJb SINE Alu -20 292 1 21 0 0 0 chr15 24947159 24947180 -60748574 + AT_rich Low_complexity Low_complexity 1 21 0 825 188 0 0 chr15 24947227 24947360 -60748394 + FLAM_C SINE Alu 1 133 -10 4630 142 22 4 chr15 24948511 24949314 -60746440 - L1MC1 LINE L1 -197 6136 5319 2414 209 96 105 chr15 24949819 24949854 -60745900 - L1MC1 LINE L1 -812 5359 5325 2048 156 13 0 chr15 24949854 24950227 -60745527 - L1MA8 LINE L1 0 6291 5914 2414 209 96 105 chr15 24950227 24950764 -60744990 - L1MC1 LINE L1 -846 5325 4785 668 173 0 0 chr15 24950764 24950868 -60744886 - FLAM_A SINE Alu -37 105 2 2414 209 96 105 chr15 24950868 24950944 -60744810 - L1MC1 LINE L1 -1386 4785 4710 191 36 36 0 chr15 24950944 24950972 -60744782 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1480 173 0 39 chr15 24950977 24951231 -60744523 - AluJo SINE Alu -30 282 39 2414 209 96 105 chr15 24951231 24951783 -60743971 - L1MC1 LINE L1 -1465 4706 4060 527 316 64 11 chr15 24952062 24952249 -60743505 + MIR SINE MIR 57 253 -9 444 296 53 0 chr15 24952692 24952844 -60742910 + MER117 DNA MER1_type 28 187 -10 386 303 56 43 chr15 24953465 24953627 -60742127 - MIR3 SINE MIR -13 195 32 302 313 31 31 chr15 24954718 24954846 -60740908 + MIR SINE MIR 26 153 -109 311 121 17 0 chr15 24955957 24956015 -60739739 + (TG)n Simple_repeat Simple_repeat 2 60 0 774 261 0 5 chr15 24957272 24957460 -60738294 - MER5A DNA MER1_type -1 188 2 517 226 28 66 chr15 24957478 24957554 -60738200 - MER5B DNA MER1_type -4 174 97 1544 180 10 33 chr15 24957554 24957860 -60737894 - AluJo SINE Alu -13 299 1 517 226 28 66 chr15 24957860 24957964 -60737790 - MER5B DNA MER1_type -81 97 1 1842 174 0 82 chr15 24958087 24958512 -60737242 - MLT1B LTR MaLR 0 390 1 503 358 201 16 chr15 24959388 24959771 -60735983 + L2 LINE L2 2860 3313 0 201 322 230 6 chr15 24959863 24960037 -60735717 - MIR SINE MIR -14 248 36 1247 194 84 0 chr15 24960291 24960600 -60735154 + L1MC4a LINE L1 7228 7562 -246 297 239 44 18 chr15 24960604 24960717 -60735037 + L1MD3 LINE L1 7870 7985 -10 298 315 115 0 chr15 24962704 24962834 -60732920 - MIR3 SINE MIR -32 176 32 305 339 47 0 chr15 24962888 24963015 -60732739 - L3 LINE CR1 -4 1573 1441 231 341 213 27 chr15 24963048 24963376 -60732378 - L3 LINE CR1 -276 1301 913 * 655 320 111 53 chr15 24963373 24964298 -60731456 + L2 LINE L2 2154 3247 -25 251 323 51 41 chr15 24964319 24964426 -60731328 - L3 LINE CR1 -742 835 724 1884 179 3 0 chr15 24964426 24964728 -60731026 - AluJo SINE Alu -9 303 1 251 323 51 41 chr15 24964728 24964815 -60730939 - L3 LINE CR1 -853 724 639 194 207 0 207 chr15 24966559 24966670 -60729084 + L2 LINE L2 3185 3272 0 492 260 8 16 chr15 24966877 24967000 -60728754 - L2 LINE L2 0 3313 3192 22 56 0 0 chr15 24967116 24967152 -60728602 + AT_rich Low_complexity Low_complexity 1 36 0 209 233 0 17 chr15 24967221 24967281 -60728473 + (TTA)n Simple_repeat Simple_repeat 1 59 0 1911 163 9 9 chr15 24968104 24968453 -60727301 + L1PB4 LINE L1 5807 6155 -1 2316 78 0 0 chr15 24969046 24969342 -60726412 + AluY SINE Alu 1 296 -15 198 103 0 0 chr15 24969864 24969893 -60725861 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 4705 148 19 19 chr15 24969897 24970847 -60724907 - L1MB1 LINE L1 0 6168 5219 195 69 0 0 chr15 24971898 24971927 -60723827 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 424 291 6 85 chr15 24972145 24972310 -60723444 - MIR3 SINE MIR -34 174 23 265 264 166 43 chr15 24972536 24972699 -60723055 + MIR SINE MIR 18 200 -62 193 329 0 0 chr15 24972739 24972812 -60722942 + MIR SINE MIR 188 260 -2 442 286 34 27 chr15 24972908 24973055 -60722699 + MIR SINE MIR 65 212 -50 306 302 5 116 chr15 24973188 24973377 -60722377 + MIR3 SINE MIR 31 198 -10 275 283 22 22 chr15 24973799 24973891 -60721863 - MIR3 SINE MIR -35 173 82 1171 247 117 43 chr15 24973924 24974313 -60721441 + MLT1G1 LTR MaLR 1 445 -150 2183 145 18 0 chr15 24974313 24974644 -60721110 + MER1B DNA MER1_type 1 337 0 1171 247 117 43 chr15 24974644 24974808 -60720946 + MLT1G1 LTR MaLR 445 595 0 322 260 31 10 chr15 24975000 24975096 -60720658 + MLT1J LTR MaLR 117 214 -297 806 253 118 53 chr15 24975235 24975725 -60720029 - LTR33A LTR ERVL 0 523 2 1736 186 55 42 chr15 24975919 24976301 -60719453 - MLT1B LTR MaLR -3 387 1 645 233 119 0 chr15 24979266 24979442 -60716312 + MIR SINE MIR 2 198 -64 246 264 19 47 chr15 24979443 24979549 -60716205 + MIR SINE MIR 160 262 0 230 296 174 31 chr15 24981364 24981560 -60714194 - L2 LINE L2 -177 3095 2872 336 321 82 15 chr15 24982066 24982200 -60713554 - L2 LINE L2 -3 3269 3127 356 234 101 62 chr15 24982340 24982567 -60713187 + L1MC4 LINE L1 7807 8042 0 1563 175 144 3 chr15 24983678 24983998 -60711756 + MLT1A1 LTR MaLR 1 365 0 1400 261 19 5 chr15 24984265 24984636 -60711118 - MLT1G LTR MaLR -1 589 214 2324 108 0 0 chr15 24985688 24985984 -60709770 - AluSx SINE Alu -14 298 3 225 316 0 20 chr15 24986105 24986203 -60709551 + A-rich Low_complexity Low_complexity 4 99 0 210 254 0 36 chr15 24987114 24987169 -60708585 + L2 LINE L2 3245 3297 -16 362 343 34 27 chr15 24987538 24987684 -60708070 + MIR3 SINE MIR 16 162 -46 279 0 0 0 chr15 24988625 24988656 -60707098 + (TG)n Simple_repeat Simple_repeat 1 31 0 256 271 43 87 chr15 24991026 24991233 -60704521 - L1MC4a LINE L1 -1897 5911 5714 244 290 171 0 chr15 24991605 24991781 -60703973 - L1MC4a LINE L1 -2280 5528 5323 420 328 152 37 chr15 24991791 24992636 -60703118 - L1MC4a LINE L1 -856 5290 4349 216 184 0 0 chr15 24992636 24992685 -60703069 + (TG)n Simple_repeat Simple_repeat 1 49 0 298 206 0 14 chr15 24993011 24993084 -60702670 + HsTC2 DNA Tc2 7 78 -1820 2548 65 3 0 chr15 24993475 24993784 -60701970 + AluY SINE Alu 2 311 0 21 0 0 0 chr15 24994990 24995011 -60700743 + AT_rich Low_complexity Low_complexity 1 21 0 3250 201 41 2 chr15 24995102 24995730 -60700024 + MER82 DNA MER2_type 1 653 0 211 256 0 0 chr15 24995746 24995789 -60699965 - MIR SINE MIR -110 152 110 550 250 39 50 chr15 24996126 24996306 -60699448 + MER5B DNA MER1_type 1 178 0 2148 143 36 52 chr15 24996405 24996557 -60699197 + Tigger2a DNA MER2_type 1 154 -2554 2211 194 7 21 chr15 24996557 24996989 -60698765 - MSTB LTR MaLR 0 426 1 2148 143 36 52 chr15 24996989 24997277 -60698477 + Tigger2a DNA MER2_type 154 434 0 411 284 18 0 chr15 24997484 24997593 -60698161 + L2 LINE L2 3154 3264 -8 1678 185 21 3 chr15 25000085 25000371 -60695383 - AluJo SINE Alu -19 293 3 205 321 57 70 chr15 25000679 25000894 -60694860 + MIR SINE MIR 3 205 -41 308 269 41 8 chr15 25001286 25001458 -60694296 + MIR SINE MIR 45 258 -4 252 200 0 0 chr15 25001794 25001849 -60693905 + CT-rich Low_complexity Low_complexity 2 56 0 968 179 0 0 chr15 25001849 25002005 -60693749 - FAM SINE Alu -19 156 1 234 217 50 0 chr15 25002474 25002534 -60693220 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 4165 142 115 21 chr15 25002535 25002994 -60692760 - MER6 DNA MER2_type 0 865 450 243 0 0 0 chr15 25002994 25003021 -60692733 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 4165 142 115 21 chr15 25003021 25003352 -60692402 - MER6 DNA MER2_type -415 450 1 4308 170 30 7 chr15 25005161 25005983 -60689771 + MER21B LTR ERV1 1 841 -22 1034 204 121 44 chr15 25006710 25007049 -60688705 - MLT1A1 LTR MaLR 0 365 1 217 174 22 43 chr15 25007401 25007447 -60688307 - MER5B DNA MER1_type -99 79 35 2303 129 13 3 chr15 25007498 25007877 -60687877 + L1MA5 LINE L1 5912 6294 -6 361 301 187 0 chr15 25007911 25008034 -60687720 + MER5A DNA MER1_type 38 183 -6 213 269 0 0 chr15 25008478 25008556 -60687198 + (TCTCTG)n Simple_repeat Simple_repeat 4 81 0 188 313 76 83 chr15 25008842 25008986 -60686768 + L2 LINE L2 3044 3186 -86 393 293 24 0 chr15 25009134 25009257 -60686497 + MIR3 SINE MIR 82 207 -1 353 257 0 0 chr15 25009442 25009512 -60686242 - L2 LINE L2 -4 3309 3240 231 103 0 0 chr15 25010062 25010101 -60685653 + (GA)n Simple_repeat Simple_repeat 2 40 0 815 170 72 5 chr15 25011330 25011524 -60684230 - L1MC2 LINE L1 -1 6343 6137 4022 161 13 10 chr15 25011528 25012315 -60683439 - L1MC3 LINE L1 -195 7590 6802 386 242 16 36 chr15 25015278 25015408 -60680346 - L1MD2 LINE L1 -56 6110 5991 24 0 0 0 chr15 25015519 25015543 -60680211 + AT_rich Low_complexity Low_complexity 1 24 0 557 234 42 24 chr15 25015780 25015947 -60679807 - MER21B LTR ERV1 -113 750 581 731 253 135 32 chr15 25015958 25016337 -60679417 + MER74B LTR ERVL 66 483 -139 635 286 50 40 chr15 25016340 25016807 -60678947 + L1MDa LINE L1 122 985 -5555 247 252 41 88 chr15 25017013 25017160 -60678594 + L1MD2 LINE L1 489 628 -5912 5220 242 108 46 chr15 25017360 25019653 -60676101 + L1MD2 LINE L1 1118 3268 -3485 1042 199 168 65 chr15 25019653 25020111 -60675643 - MLT1D LTR MaLR 0 505 1 5220 242 108 46 chr15 25020111 25021208 -60674546 + L1MD2 LINE L1 3268 4296 -2457 4450 158 45 9 chr15 25021208 25022068 -60673686 + L1MA4A LINE L1 5413 6303 0 5220 242 108 46 chr15 25022068 25023882 -60671872 + L1MD2 LINE L1 4296 6750 -3 473 313 72 10 chr15 25023900 25024095 -60671659 - MIR SINE MIR -10 252 46 233 276 31 10 chr15 25025559 25025657 -60670097 + Charlie7 DNA MER1_type 5 104 -2508 * 237 211 101 18 chr15 25025651 25025760 -60669994 + Charlie7 DNA MER1_type 2440 2557 -55 228 35 0 0 chr15 25025778 25025807 -60669947 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1118 141 61 50 chr15 25025847 25026045 -60669709 - AluJb SINE Alu -112 200 1 246 356 95 30 chr15 25026763 25027058 -60668696 - L3 LINE CR1 -597 980 667 364 336 83 43 chr15 25027217 25027665 -60668089 - L2 LINE L2 -177 3095 2642 304 376 44 17 chr15 25027810 25027991 -60667763 - L3 LINE CR1 -1144 433 248 502 220 53 15 chr15 25028055 25028187 -60667567 + MIR SINE MIR 116 252 -10 566 305 42 8 chr15 25028711 25028950 -60666804 + LTR16A1 LTR ERVL 209 455 -2 369 372 33 28 chr15 25029593 25029808 -60665946 - MIR SINE MIR 0 262 47 185 277 48 24 chr15 25029871 25029954 -60665800 - MIR SINE MIR -139 123 39 261 83 0 0 chr15 25030770 25030806 -60664948 + (TA)n Simple_repeat Simple_repeat 2 37 0 266 309 67 47 chr15 25031301 25031450 -60664304 + L3 LINE CR1 951 1102 -475 776 158 60 27 chr15 25031787 25031970 -60663784 - MER5A DNA MER1_type 0 189 1 263 256 49 0 chr15 25032611 25032693 -60663061 - MIR SINE MIR -57 205 120 211 179 90 60 chr15 25033349 25033416 -60662338 - MIR SINE MIR -111 151 83 599 230 113 31 chr15 25033641 25033863 -60661891 - MIR SINE MIR 0 262 23 2230 112 0 20 chr15 25035030 25035335 -60660419 + AluSc SINE Alu 1 299 -10 1048 149 40 0 chr15 25036087 25036288 -60659466 + MER2 DNA MER2_type 2 210 -135 21 36 0 0 chr15 25036296 25036324 -60659430 + AT_rich Low_complexity Low_complexity 1 28 0 181 216 0 39 chr15 25036480 25036531 -60659223 + L2 LINE L2 3264 3312 -1 630 264 24 6 chr15 25036582 25036749 -60659005 - MIR SINE MIR -64 198 29 2196 52 39 52 chr15 25037553 25037859 -60657895 + AluY SINE Alu 1 302 -9 472 333 25 10 chr15 25037965 25038169 -60657585 + L2 LINE L2 3104 3310 -3 28 0 0 0 chr15 25038719 25038747 -60657007 + AT_rich Low_complexity Low_complexity 1 28 0 181 211 118 26 chr15 25038807 25038883 -60656871 - L2 LINE L2 -1 3312 3230 396 261 213 46 chr15 25039865 25040194 -60655560 - L1ME4a LINE L1 -2 6119 5736 432 104 0 0 chr15 25040288 25040355 -60655399 + (TG)n Simple_repeat Simple_repeat 2 68 0 356 348 82 11 chr15 25044014 25044198 -60651556 + MIR3 SINE MIR 2 198 -10 884 204 0 6 chr15 25044858 25045025 -60650729 + MLT1F1 LTR MaLR 5 170 -372 2120 215 54 57 chr15 25045399 25046065 -60649689 + MER21B LTR ERV1 78 741 -122 1276 235 75 8 chr15 25046125 25046487 -60649267 + MLT1F1 LTR MaLR 182 567 0 1884 93 0 56 chr15 25046491 25046760 -60648994 + AluY SINE Alu 1 254 -57 314 319 42 28 chr15 25047929 25048073 -60647681 - MIR3 SINE MIR -57 151 6 366 91 0 0 chr15 25050495 25050550 -60645204 + (TC)n Simple_repeat Simple_repeat 2 56 0 207 0 0 0 chr15 25051073 25051096 -60644658 + (TTG)n Simple_repeat Simple_repeat 2 24 0 277 310 64 70 chr15 25052450 25052637 -60643117 - MER5A DNA MER1_type -1 188 3 216 345 23 23 chr15 25052958 25053045 -60642709 - MIR3 SINE MIR -21 187 101 21 36 0 0 chr15 25053660 25053688 -60642066 + AT_rich Low_complexity Low_complexity 1 28 0 5745 167 51 14 chr15 25053688 25053747 -60642007 - L1MA7 LINE L1 0 6291 6236 193 57 57 0 chr15 25053747 25053782 -60641972 + (TA)n Simple_repeat Simple_repeat 2 38 0 5745 167 51 14 chr15 25053782 25055760 -60639994 - L1MA7 LINE L1 -55 6236 4067 3080 188 21 20 chr15 25055759 25056457 -60639297 + L1MA7 LINE L1 3356 4054 -2092 * 356 328 25 102 chr15 25056742 25056986 -60638768 + L2 LINE L2 2957 3181 -91 2544 148 39 2 chr15 25057597 25058010 -60637744 + MSTA LTR MaLR 1 428 0 2456 77 0 6 chr15 25058191 25058504 -60637250 - AluY SINE Alu 0 311 1 191 317 31 114 chr15 25059678 25060003 -60635751 + L2 LINE L2 1279 1576 -1738 458 226 70 75 chr15 25060016 25060262 -60635492 + MLT1H1 LTR MaLR 129 362 -180 1299 212 34 69 chr15 25060262 25060640 -60635114 + MLT1A1 LTR MaLR 1 365 0 458 226 70 75 chr15 25060640 25060690 -60635064 + MLT1H1 LTR MaLR 362 411 -131 1531 193 47 99 chr15 25060690 25061086 -60634668 - MLT1C LTR MaLR 0 467 99 3883 49 0 0 chr15 25061086 25061558 -60634196 - L1PA6 LINE L1 -2 6152 5681 1531 193 47 99 chr15 25061558 25061648 -60634106 - MLT1C LTR MaLR -368 99 6 302 219 114 18 chr15 25061664 25061778 -60633976 + MLT1H1 LTR MaLR 429 553 -2 364 307 39 0 chr15 25061782 25061909 -60633845 + L2 LINE L2 1812 1943 -1371 1134 149 27 40 chr15 25062561 25062783 -60632971 - MER20 DNA MER1_type 0 219 1 715 209 99 6 chr15 25063881 25064053 -60631701 + MER58A DNA MER1_type 34 221 -3 421 282 80 31 chr15 25065764 25065927 -60629827 + MIR SINE MIR 92 262 0 198 250 19 19 chr15 25066689 25066741 -60629013 - L3 LINE CR1 -2 1575 1524 194 259 58 101 chr15 25067171 25067186 -60628568 - L2 LINE L2 0 3313 3299 2035 123 0 0 chr15 25067186 25067462 -60628292 - AluSq SINE Alu -13 300 25 194 259 58 101 chr15 25067462 25067585 -60628169 - L2 LINE L2 -14 3299 3181 366 322 38 44 chr15 25068305 25068488 -60627266 - MER5A DNA MER1_type 0 189 8 328 292 42 17 chr15 25068512 25068632 -60627122 + L2 LINE L2 3191 3313 0 232 254 16 0 chr15 25069763 25069826 -60625928 + MIR SINE MIR 87 150 -58 610 274 86 65 chr15 25069845 25070272 -60625482 + L2 LINE L2 2736 3179 -134 585 200 67 7 chr15 25070858 25070993 -60624761 + L2 LINE L2 3171 3313 0 2386 96 0 0 chr15 25072185 25072486 -60623268 + AluSx SINE Alu 1 301 -11 189 283 33 33 chr15 25072486 25072546 -60623208 + MER5A DNA MER1_type 66 125 -64 615 314 88 7 chr15 25073405 25073659 -60622095 + MIR SINE MIR 10 262 0 198 302 0 16 chr15 25074940 25075003 -60620751 - MIR3 SINE MIR 0 208 147 2082 124 0 0 chr15 25075943 25076233 -60619521 - AluY SINE Alu -5 306 17 255 339 139 9 chr15 25077495 25077610 -60618144 - MIR SINE MIR -102 160 31 27 0 0 0 chr15 25078713 25078740 -60617014 + AT_rich Low_complexity Low_complexity 1 27 0 243 342 105 0 chr15 25078761 25078875 -60616879 + L2 LINE L2 3188 3313 0 31 0 0 0 chr15 25078889 25078920 -60616834 + AT_rich Low_complexity Low_complexity 1 31 0 221 241 19 0 chr15 25079002 25079056 -60616698 + (TG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr15 25079364 25079387 -60616367 + AT_rich Low_complexity Low_complexity 1 23 0 203 59 0 29 chr15 25079832 25079866 -60615888 + (CA)n Simple_repeat Simple_repeat 2 34 0 2211 102 0 3 chr15 25081613 25081908 -60613846 - AluSx SINE Alu -18 294 1 180 135 0 0 chr15 25082781 25082818 -60612936 + (TAA)n Simple_repeat Simple_repeat 3 39 0 180 0 0 0 chr15 25083177 25083197 -60612557 + (TAATG)n Simple_repeat Simple_repeat 1 20 0 307 349 59 20 chr15 25083246 25083398 -60612356 - L1ME LINE L1 -310 5852 5695 264 83 0 117 chr15 25083444 25083504 -60612250 + MADE1 DNA Mariner 1 53 -27 325 296 89 17 chr15 25083520 25083811 -60611943 - L1ME LINE L1 -558 5612 5301 186 143 0 0 chr15 25083821 25083856 -60611898 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 404 344 113 31 chr15 25083856 25084246 -60611508 - L2 LINE L2 0 3313 2892 471 340 46 5 chr15 25084849 25085043 -60610711 - MIR SINE MIR -4 258 57 261 235 13 180 chr15 25085478 25085639 -60610115 - MIR SINE MIR 0 208 74 400 272 9 0 chr15 25086040 25086154 -60609600 - MER46C DNA MER2_type -2 336 222 1242 209 154 138 chr15 25086161 25087053 -60608701 - LTR1B LTR ERV1 0 1020 1 803 193 57 70 chr15 25087053 25087273 -60608481 - MER46C DNA MER2_type -120 218 2 268 258 93 0 chr15 25087287 25087384 -60608370 - MIR SINE MIR -108 154 49 2421 229 71 27 chr15 25088371 25089738 -60606016 - L1ME1 LINE L1 -41 6936 5433 28 61 0 0 chr15 25089909 25089958 -60605796 + AT_rich Low_complexity Low_complexity 1 49 0 25 75 0 0 chr15 25090074 25090127 -60605627 + AT_rich Low_complexity Low_complexity 1 53 0 1972 245 76 32 chr15 25090142 25090634 -60605120 - L1ME1 LINE L1 -4592 2367 1898 1388 194 148 17 chr15 25090634 25091047 -60604707 - MLT1C LTR MaLR 0 467 1 1972 245 76 32 chr15 25091047 25091691 -60604063 - L1ME1 LINE L1 -5061 1898 1206 467 310 37 29 chr15 25092222 25092467 -60603287 - L1ME1 LINE L1 -6612 247 1 266 349 18 0 chr15 25093504 25093613 -60602141 - MIR3 SINE MIR -5 203 93 316 331 69 0 chr15 25094629 25094774 -60600980 - MIR SINE MIR -35 227 73 180 318 0 0 chr15 25095168 25095212 -60600542 + L2 LINE L2 3204 3247 -25 243 224 0 0 chr15 25095312 25095370 -60600384 + L1ME4a LINE L1 5865 5922 -199 475 281 79 37 chr15 25095954 25096118 -60599636 + MER5A DNA MER1_type 7 177 -12 544 302 74 21 chr15 25097431 25097673 -60598081 + MIR SINE MIR 2 256 -6 208 337 56 0 chr15 25097687 25097776 -60597978 - L3 LINE CR1 -410 1167 1074 1978 116 11 11 chr15 25098483 25098767 -60596987 + AluSx SINE Alu 1 284 -28 789 101 0 0 chr15 25098767 25098906 -60596848 + (TA)n Simple_repeat Simple_repeat 1 139 0 297 0 0 0 chr15 25099128 25099161 -60596593 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 203 0 0 chr15 25099163 25099222 -60596532 + (CA)n Simple_repeat Simple_repeat 2 60 0 660 309 48 35 chr15 25099401 25099799 -60595955 - L1ME4a LINE L1 -195 5926 5524 243 0 0 0 chr15 25099986 25100013 -60595741 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 195 0 0 chr15 25102929 25102970 -60592784 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 189 348 27 45 chr15 25105298 25105410 -60590344 + MIR SINE MIR 37 146 -62 208 373 0 0 chr15 25107207 25107274 -60588480 + L2 LINE L2 3224 3290 -23 21 0 0 0 chr15 25107574 25107595 -60588159 + AT_rich Low_complexity Low_complexity 1 21 0 314 313 61 71 chr15 25107935 25108099 -60587655 - MIR3 SINE MIR -9 199 36 2417 118 22 0 chr15 25108099 25108455 -60587299 - THE1B LTR MaLR 0 364 1 314 313 61 71 chr15 25108455 25108488 -60587266 - MIR3 SINE MIR -172 36 4 492 305 58 70 chr15 25108514 25108773 -60586981 - L2 LINE L2 -5 3267 3012 197 167 67 67 chr15 25110535 25110595 -60585159 + L2 LINE L2 3173 3232 -81 228 344 68 47 chr15 25110738 25110930 -60584824 + L2 LINE L2 2867 3062 -210 246 32 0 0 chr15 25111614 25111645 -60584109 + (CA)n Simple_repeat Simple_repeat 2 32 0 1948 85 8 0 chr15 25112005 25112283 -60583471 + AluSc SINE Alu 39 318 0 180 373 45 0 chr15 25113369 25113436 -60582318 - L2 LINE L2 -5 3308 3239 690 239 46 46 chr15 25116242 25116481 -60579273 + MIR SINE MIR 9 247 -15 233 210 0 0 chr15 25116558 25116620 -60579134 + T-rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr15 25117134 25117164 -60578590 + AT_rich Low_complexity Low_complexity 1 30 0 1885 127 34 17 chr15 25117207 25117499 -60578255 + AluSx SINE Alu 1 297 -15 183 100 0 0 chr15 25118708 25118738 -60577016 + (CAT)n Simple_repeat Simple_repeat 3 32 0 248 74 481 0 chr15 25119708 25119762 -60575992 - MADE1 DNA Mariner 0 80 1 798 275 18 18 chr15 25120698 25120927 -60574827 - MIR SINE MIR 0 262 34 439 78 0 104 chr15 25122265 25122342 -60573412 + Tigger2 DNA MER2_type 1 69 -2649 * 1822 117 22 6 chr15 25122340 25122656 -60573098 + Tigger2 DNA MER2_type 2280 2600 -118 1070 188 50 0 chr15 25122655 25122894 -60572860 + Tigger2 DNA MER2_type 2456 2706 -12 * 536 231 94 6 chr15 25122918 25123078 -60572676 + MLT1J LTR MaLR 87 260 -251 2254 86 0 7 chr15 25124656 25124946 -60570808 + AluSg SINE Alu 1 288 -22 196 50 0 50 chr15 25125780 25125820 -60569934 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 184 374 30 20 chr15 25125941 25126040 -60569714 - L3 LINE CR1 -2 1575 1476 215 216 0 20 chr15 25126164 25126215 -60569539 + GA-rich Low_complexity Low_complexity 5 54 0 386 266 65 49 chr15 25128466 25128650 -60567104 + LTR33 LTR ERVL 32 218 -303 595 276 12 6 chr15 25128749 25128919 -60566835 + LTR33 LTR ERVL 347 517 -4 246 393 29 21 chr15 25129196 25129336 -60566418 - L2 LINE L2 -44 3228 3088 2589 47 0 0 chr15 25129688 25129989 -60565765 - AluY SINE Alu -10 301 1 281 318 63 16 chr15 25130160 25130286 -60565468 - L2 LINE L2 0 3313 3182 1500 197 20 0 chr15 25132256 25132556 -60563198 + Tigger3b DNA MER2_type 1 306 -925 1157 99 0 13 chr15 25132598 25132750 -60563004 - AluSq/x SINE Alu -163 150 1 1273 109 15 10 chr15 25132750 25132951 -60562803 + Tigger3b DNA MER2_type 294 495 -736 * 1800 179 87 0 chr15 25132949 25133295 -60562459 + Tigger3b DNA MER2_type 857 1232 0 198 71 0 0 chr15 25134289 25134317 -60561437 + (CA)n Simple_repeat Simple_repeat 2 29 0 1414 259 71 112 chr15 25136189 25137439 -60558315 - L2 LINE L2 0 3313 2118 272 299 16 110 chr15 25139265 25139392 -60556362 - MER91C DNA MER1_type -2 138 24 402 383 18 6 chr15 25140053 25140220 -60555534 + MIR3 SINE MIR 2 170 -38 182 359 56 61 chr15 25140875 25141106 -60554648 + L2 LINE L2 3043 3272 0 2186 153 3 12 chr15 25141166 25141506 -60554248 - MER1B DNA MER1_type 0 337 1 708 238 99 0 chr15 25141662 25141834 -60553920 - MER5A DNA MER1_type 0 189 1 705 268 93 5 chr15 25142648 25142853 -60552901 - MIR SINE MIR -33 229 7 188 224 102 0 chr15 25142963 25142978 -60552776 - L2 LINE L2 -1 3312 3259 189 235 0 0 chr15 25142978 25143012 -60552742 - MIR SINE MIR -15 247 214 426 20 0 0 chr15 25144949 25145000 -60550754 + (TG)n Simple_repeat Simple_repeat 2 52 0 327 224 7 84 chr15 25145734 25145877 -60549877 - L1MC4 LINE L1 -3 8039 7908 400 274 65 10 chr15 25145917 25146118 -60549636 - L1MC4 LINE L1 -139 7903 7692 214 276 13 40 chr15 25146306 25146382 -60549372 - MIR SINE MIR -106 102 29 252 59 0 0 chr15 25147862 25147896 -60547858 + (TG)n Simple_repeat Simple_repeat 1 34 0 226 365 37 19 chr15 25150898 25151005 -60544749 + MER5A DNA MER1_type 66 174 -15 23 0 0 0 chr15 25151075 25151098 -60544656 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr15 25151163 25151199 -60544555 + AT_rich Low_complexity Low_complexity 1 36 0 307 357 83 10 chr15 25152356 25152549 -60543205 + MIR SINE MIR 45 250 -12 288 0 0 0 chr15 25156752 25156784 -60538970 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr15 25156794 25156817 -60538937 + (TA)n Simple_repeat Simple_repeat 2 24 0 463 316 165 5 chr15 25157726 25157944 -60537810 + MIR SINE MIR 2 254 -8 469 288 21 30 chr15 25160102 25160338 -60535416 - L1ME3A LINE L1 -219 5951 5718 544 309 21 42 chr15 25160610 25161022 -60534732 - L1ME3A LINE L1 -559 5603 5199 2151 110 0 3 chr15 25161022 25161304 -60534450 - AluSg SINE Alu -27 283 3 544 309 21 42 chr15 25161304 25161371 -60534383 - L1ME3A LINE L1 -963 5199 5132 346 282 84 14 chr15 25161411 25161553 -60534201 - L2 LINE L2 -15 3298 3147 2300 96 0 0 chr15 25161718 25162011 -60533743 + AluSx SINE Alu 1 293 -19 455 301 51 37 chr15 25162504 25162808 -60532946 + L2 LINE L2 2713 3018 -254 226 226 66 80 chr15 25162925 25163062 -60532692 + L1MC/D LINE L1 5776 5910 -1898 373 319 64 19 chr15 25163315 25163472 -60532282 + L1ME4a LINE L1 4756 4919 -1227 23 68 0 0 chr15 25163549 25163593 -60532161 + AT_rich Low_complexity Low_complexity 1 44 0 245 259 76 68 chr15 25163717 25163953 -60531801 + L1ME4a LINE L1 5726 5963 -158 226 333 0 0 chr15 25163955 25164036 -60531718 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 183 253 247 34 chr15 25164362 25164508 -60531246 + L2 LINE L2 3135 3311 -2 376 282 8 89 chr15 25168307 25168555 -60527199 + L2 LINE L2 3077 3304 -9 247 286 116 0 chr15 25168963 25169075 -60526679 + MER117 DNA MER1_type 30 154 -43 344 346 71 82 chr15 25170323 25170603 -60525151 - L2 LINE L2 -19 3253 2977 191 441 38 25 chr15 25170964 25171284 -60524470 - L2 LINE L2 -437 2877 2554 1694 186 37 3 chr15 25171289 25171585 -60524169 + AluJo SINE Alu 1 306 -6 2410 113 0 24 chr15 25172342 25172715 -60523039 + THE1B LTR MaLR 1 364 0 1882 135 10 20 chr15 25176291 25176607 -60519147 + AluSx SINE Alu 1 312 0 2253 95 3 7 chr15 25176977 25177273 -60518481 + AluSx SINE Alu 4 298 -14 817 134 70 0 chr15 25177838 25177995 -60517759 + L1MA4 LINE L1 6121 6288 -12 2126 138 0 0 chr15 25178129 25178427 -60517327 - AluSx SINE Alu -14 298 1 406 328 72 33 chr15 25178898 25179358 -60516396 + L1ME LINE L1 4312 4789 -1357 431 302 186 41 chr15 25179428 25179529 -60516225 - L3 LINE CR1 -614 963 878 1726 170 35 44 chr15 25179529 25179959 -60515795 - LTR37A LTR ERV1 0 426 1 431 302 186 41 chr15 25179959 25180148 -60515606 - L3 LINE CR1 -699 878 631 439 263 46 53 chr15 25180340 25180492 -60515262 - L2 LINE L2 -1 3271 3121 1150 284 81 10 chr15 25180991 25181588 -60514166 + L1ME LINE L1 5178 5810 -360 311 191 8 24 chr15 25181635 25181761 -60513993 + (TA)n Simple_repeat Simple_repeat 2 125 0 2544 119 51 0 chr15 25181761 25182174 -60513580 - MER57B LTR ERV1 0 434 1 248 0 31 0 chr15 25182174 25182206 -60513548 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 329 235 40 7 chr15 25182668 25182817 -60512937 + (TA)n Simple_repeat Simple_repeat 2 155 0 215 31 31 0 chr15 25182882 25182914 -60512840 + (TG)n Simple_repeat Simple_repeat 2 34 0 2681 109 5 36 chr15 25182928 25183370 -60512384 - L1PB1 LINE L1 0 6151 5724 22 0 0 0 chr15 25184693 25184715 -60511039 + AT_rich Low_complexity Low_complexity 1 22 0 214 158 26 118 chr15 25186793 25186846 -60508908 + MIR3 SINE MIR 108 153 -55 682 209 37 58 chr15 25186846 25187037 -60508717 + MER5A DNA MER1_type 3 189 0 374 141 28 0 chr15 25187459 25187530 -60508224 + CT-rich Low_complexity Low_complexity 3 75 0 1932 162 13 0 chr15 25187532 25187721 -60508033 - AluJb SINE Alu 0 312 116 270 0 0 0 chr15 25187721 25187751 -60508003 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1932 162 13 0 chr15 25187751 25187869 -60507885 - AluJb SINE Alu -196 116 1 21 0 0 0 chr15 25188372 25188393 -60507361 + AT_rich Low_complexity Low_complexity 1 21 0 306 344 33 8 chr15 25189816 25189938 -60505816 - MIR SINE MIR -65 143 19 1749 149 11 4 chr15 25190734 25190996 -60504758 + AluJb SINE Alu 1 264 -48 348 24 0 0 chr15 25191007 25191048 -60504706 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 924 220 5 5 chr15 25191210 25191396 -60504358 - MER5A DNA MER1_type -3 186 1 234 0 0 0 chr15 25191405 25191431 -60504323 + (T)n Simple_repeat Simple_repeat 1 26 0 502 263 150 19 chr15 25191884 25192044 -60503710 - MER5A DNA MER1_type 0 189 9 267 173 0 0 chr15 25192543 25192595 -60503159 + GA-rich Low_complexity Low_complexity 1 52 0 517 310 95 22 chr15 25192948 25193180 -60502574 - MIR SINE MIR -2 260 12 287 349 35 30 chr15 25193564 25193733 -60502021 + LTR67 LTR ERVL 31 200 -357 2347 101 0 7 chr15 25194735 25195042 -60500712 + AluSg SINE Alu 1 305 -5 204 274 10 88 chr15 25196454 25196556 -60499198 - MIR SINE MIR -25 237 144 403 288 144 0 chr15 25196815 25196926 -60498828 + MER5A DNA MER1_type 63 189 0 255 29 29 0 chr15 25196945 25196980 -60498774 - MLT1I LTR MaLR -3 406 371 22 0 0 0 chr15 25198231 25198253 -60497501 + AT_rich Low_complexity Low_complexity 1 22 0 269 155 17 0 chr15 25198253 25198311 -60497443 + (CA)n Simple_repeat Simple_repeat 2 60 0 235 195 117 13 chr15 25198477 25198554 -60497200 - MIR3 SINE MIR -23 185 101 224 222 101 0 chr15 25199685 25199756 -60495998 + MIR SINE MIR 114 193 -69 250 289 105 0 chr15 25199792 25199868 -60495886 + MIR SINE MIR 178 261 -1 589 258 64 61 chr15 25200982 25201277 -60494477 + LTR16A1 LTR ERVL 158 453 -4 240 320 124 0 chr15 25201388 25201485 -60494269 + L2 LINE L2 3128 3236 -36 236 192 260 0 chr15 25201579 25201652 -60494102 + MIR3 SINE MIR 112 203 -5 231 250 54 0 chr15 25201878 25201934 -60493820 - L2 LINE L2 -6 3307 3249 332 282 130 6 chr15 25201998 25202175 -60493579 - MIR SINE MIR -57 205 2 676 333 18 29 chr15 25203223 25203496 -60492258 - HAL1 LINE L1 -1783 724 455 368 304 95 12 chr15 25203664 25203832 -60491922 - HAL1 LINE L1 -2275 232 51 496 218 122 0 chr15 25204124 25204280 -60491474 + MIR SINE MIR 60 234 -28 185 192 58 19 chr15 25204251 25204303 -60491451 + L2 LINE L2 3251 3304 -9 * 422 318 140 0 chr15 25204818 25204997 -60490757 - L3 LINE CR1 -8 1569 1366 1079 190 25 10 chr15 25205229 25205429 -60490325 + MER20 DNA MER1_type 16 218 -1 214 384 8 24 chr15 25205436 25205561 -60490193 - L2 LINE L2 -226 3046 2924 198 329 138 24 chr15 25205617 25205784 -60489970 - L3 LINE CR1 -252 1325 1140 223 178 0 22 chr15 25207073 25207118 -60488636 + GA-rich Low_complexity Low_complexity 4 47 0 302 333 61 24 chr15 25207406 25207571 -60488183 - MER5B DNA MER1_type -7 171 1 384 292 53 0 chr15 25207689 25207802 -60487952 + MIR SINE MIR 28 146 -62 297 292 142 8 chr15 25208953 25209073 -60486681 + MIR SINE MIR 17 152 -56 250 200 12 118 chr15 25210123 25210208 -60485546 + L2 LINE L2 3235 3310 -3 509 333 157 33 chr15 25211113 25211931 -60483823 + L2 LINE L2 2349 3272 0 969 57 19 13 chr15 25212403 25212561 -60483193 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2030 198 8 16 chr15 25212916 25213284 -60482470 - MLT1A1 LTR MaLR 0 365 1 196 317 77 39 chr15 25213613 25213717 -60482037 - MIR SINE MIR -109 153 46 192 382 40 13 chr15 25213734 25213810 -60481944 - MIR3 SINE MIR -127 81 4 187 354 31 23 chr15 25215541 25215671 -60480083 - MIR SINE MIR -50 212 82 209 264 0 0 chr15 25217647 25217700 -60478054 - L2 LINE L2 -94 3219 3167 460 335 88 0 chr15 25217748 25217930 -60477824 - MIR SINE MIR -1 261 64 4715 149 16 34 chr15 25218012 25218200 -60477554 + L1MB8 LINE L1 5305 5495 -683 1713 191 0 16 chr15 25218200 25218503 -60477251 + AluJo SINE Alu 1 298 -14 4715 149 16 34 chr15 25218503 25218670 -60477084 + L1MB8 LINE L1 5495 5664 -514 2171 127 49 32 chr15 25218670 25219039 -60476715 + THE1C LTR MaLR 1 375 0 4715 149 16 34 chr15 25219039 25219566 -60476188 + L1MB8 LINE L1 5664 6172 -6 3194 115 44 78 chr15 25220222 25220754 -60475000 - Tigger3(Golem) DNA MER2_type 0 3029 2516 3715 66 0 0 chr15 25220754 25221194 -60474560 - L1PA7 LINE L1 -2 6152 5713 3194 115 44 78 chr15 25221194 25221254 -60474500 - Tigger3(Golem) DNA MER2_type -513 2516 2456 296 196 49 20 chr15 25221262 25221364 -60474390 + Zaphod DNA AcHobo 888 992 -3039 * 1890 186 51 35 chr15 25221361 25221790 -60473964 + Zaphod DNA AcHobo 3596 4031 0 300 351 56 82 chr15 25221836 25222155 -60473599 - L2 LINE L2 -19 3253 2943 206 339 56 44 chr15 25222190 25222441 -60473313 - L2 LINE L2 -468 2846 2593 3682 97 34 2 chr15 25222545 25223042 -60472712 + MER75 DNA T2_type 1 513 -1 617 355 92 28 chr15 25223086 25223512 -60472242 - L3 LINE CR1 -40 1537 1085 451 240 44 74 chr15 25223722 25223925 -60471829 + MIR SINE MIR 39 232 -30 482 118 94 0 chr15 25223929 25224014 -60471740 - MER53 DNA DNA 0 189 97 288 229 12 36 chr15 25224037 25224120 -60471634 + CT-rich Low_complexity Low_complexity 4 84 0 336 303 132 20 chr15 25224250 25224402 -60471352 + MIR SINE MIR 82 250 -12 2248 106 3 0 chr15 25227679 25227972 -60467782 - AluSp SINE Alu -19 294 1 532 297 113 5 chr15 25228594 25228779 -60466975 + MIR SINE MIR 25 229 -33 6662 150 47 3 chr15 25230837 25232161 -60463593 + L1MC1 LINE L1 4964 6332 -1 405 357 143 12 chr15 25232990 25233508 -60462246 - L2 LINE L2 -350 2964 2379 195 42 0 0 chr15 25234140 25234164 -60461590 + (TTG)n Simple_repeat Simple_repeat 3 26 0 396 275 140 42 chr15 25234174 25234410 -60461344 - MIR SINE MIR 0 262 4 263 244 128 12 chr15 25235888 25235974 -60459780 + MIR3 SINE MIR 77 172 -36 497 297 96 17 chr15 25236487 25236726 -60459028 - MIR SINE MIR -3 259 2 1015 275 55 50 chr15 25237104 25237622 -60458132 - MLT1G3 LTR MaLR -13 536 1 297 289 178 0 chr15 25237622 25237757 -60457997 + MIR SINE MIR 90 248 -14 180 0 0 0 chr15 25238300 25238320 -60457434 + (A)n Simple_repeat Simple_repeat 1 20 0 344 258 31 21 chr15 25239130 25239227 -60456527 - MIR SINE MIR -6 256 159 196 274 95 12 chr15 25241192 25241276 -60454478 - MIR SINE MIR -84 178 88 628 333 15 10 chr15 25241355 25241553 -60454201 - MIR SINE MIR -44 218 20 6430 75 0 0 chr15 25242028 25242839 -60452915 + L1PA8 LINE L1 5374 6184 0 336 115 0 0 chr15 25242992 25243044 -60452710 + L1MB1 LINE L1 6116 6167 -1 371 316 101 0 chr15 25243108 25243276 -60452478 + MIR SINE MIR 62 246 -16 228 219 0 0 chr15 25244079 25244120 -60451634 + MLT1I LTR MaLR 369 409 0 4468 154 15 24 chr15 25246492 25246665 -60449089 + L1P LINE L1 3432 3605 -2541 1814 45 0 58 chr15 25246665 25246907 -60448847 + L1PA4 LINE L1 5928 6155 0 4468 154 15 24 chr15 25246907 25247514 -60448240 + L1P LINE L1 3605 4205 -1941 561 220 200 13 chr15 25247618 25247768 -60447986 + MIR SINE MIR 77 254 -8 514 304 160 22 chr15 25247950 25248318 -60447436 + MLT1J2 LTR MaLR 1 419 -31 250 209 34 149 chr15 25248526 25248595 -60447159 + L1M3 LINE L1 4901 4946 -1200 2534 55 0 0 chr15 25248595 25248888 -60446866 - AluSc SINE Alu -16 293 1 250 209 34 149 chr15 25248888 25248966 -60446788 + L1M3 LINE L1 4946 5031 -1115 1917 168 5 45 chr15 25248979 25249354 -60446400 + L1M3 LINE L1 5308 5667 -513 861 268 99 47 chr15 25249880 25250112 -60445642 + MLT1H LTR MaLR 1 220 -329 1979 161 0 0 chr15 25250112 25250403 -60445351 + AluSx SINE Alu 5 295 -17 861 268 99 47 chr15 25250403 25250653 -60445101 + MLT1H LTR MaLR 220 549 0 274 332 37 74 chr15 25250783 25250973 -60444781 + MER5A DNA MER1_type 1 183 -6 192 375 98 0 chr15 25250981 25251093 -60444661 + L2 LINE L2 3150 3272 0 212 0 36 0 chr15 25252215 25252243 -60443511 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 318 159 0 chr15 25252243 25252375 -60443379 - L1ME LINE L1 -462 5659 5507 532 280 106 5 chr15 25252701 25252890 -60442864 + MIR SINE MIR 49 256 -6 349 315 90 63 chr15 25252946 25253432 -60442322 - L1ME LINE L1 -1015 5131 4618 1056 298 79 33 chr15 25253432 25253862 -60441892 + LTR16A LTR ERVL 1 450 0 349 315 90 63 chr15 25253862 25254099 -60441655 - L1ME LINE L1 -1528 4618 4389 493 318 46 71 chr15 25254153 25254433 -60441321 + L3 LINE CR1 1266 1538 -39 836 254 18 0 chr15 25254791 25254960 -60440794 + MER58A DNA MER1_type 1 172 -52 323 378 31 0 chr15 25254998 25255125 -60440629 + MIR SINE MIR 6 136 -126 1071 273 135 16 chr15 25255186 25255505 -60440249 - LTR18A LTR ERVL 0 357 1 4230 144 65 1 chr15 25255506 25256152 -60439602 - HERVL18 LTR ERVL 0 6047 5361 2022 264 57 4 chr15 25256152 25256905 -60438849 + L1ME1 LINE L1 2846 3638 -2508 1624 191 71 45 chr15 25257052 25257434 -60438320 - MLT2B1 LTR ERVL -128 392 1 3525 206 95 47 chr15 25257441 25258626 -60437128 + L1ME1 LINE L1 4069 5310 -836 803 158 0 0 chr15 25258631 25258745 -60437009 + FLAM_C SINE Alu 5 118 -15 8778 69 0 1 chr15 25258745 25260602 -60435152 + L1PA7 LINE L1 4291 6148 -6 913 172 6 35 chr15 25260602 25260776 -60434978 + AluJb SINE Alu 134 302 -10 2858 221 84 27 chr15 25260777 25261528 -60434226 + L1ME1 LINE L1 5299 6092 -74 26 0 0 0 chr15 25261541 25261567 -60434187 + AT_rich Low_complexity Low_complexity 1 26 0 225 244 0 0 chr15 25261874 25261919 -60433835 - MIR SINE MIR -128 134 90 261 87 43 0 chr15 25261920 25261966 -60433788 + L1MC3 LINE L1 7738 7785 0 666 239 43 129 chr15 25262009 25262428 -60433326 + MLT1F-int LTR MaLR 982 1364 -7 1118 235 158 11 chr15 25262533 25262895 -60432859 + MLT1F LTR MaLR 128 542 0 207 186 0 0 chr15 25263648 25263691 -60432063 + (CAT)n Simple_repeat Simple_repeat 2 44 0 736 267 42 0 chr15 25263713 25263904 -60431850 - MIR SINE MIR -30 232 34 1531 202 13 23 chr15 25264781 25265088 -60430666 - MER58B DNA MER1_type -37 304 1 213 344 0 0 chr15 25265123 25265184 -60430570 + L2 LINE L2 3187 3247 -25 377 214 61 20 chr15 25266222 25266320 -60429434 + L2 LINE L2 3211 3312 -1 186 43 0 0 chr15 25267143 25267166 -60428588 + (A)n Simple_repeat Simple_repeat 1 23 0 1001 210 79 98 chr15 25267723 25268190 -60427564 + MLT1C LTR MaLR 2 459 -8 330 266 0 25 chr15 25271873 25271952 -60423802 - MER5A DNA MER1_type -40 149 73 599 261 152 13 chr15 25272057 25272287 -60423467 - MIR SINE MIR 0 262 1 205 268 42 0 chr15 25272407 25272478 -60423276 - MIR SINE MIR -128 134 61 3049 77 3 0 chr15 25274427 25274790 -60420964 + THE1B LTR MaLR 1 364 0 315 331 31 15 chr15 25275551 25275681 -60420073 + L2 LINE L2 3182 3313 0 266 300 0 22 chr15 25275931 25276021 -60419733 - L3 LINE CR1 -10 1567 1480 186 283 61 50 chr15 25276952 25277032 -60418722 + MIR SINE MIR 77 160 -102 2339 112 50 31 chr15 25277032 25277389 -60418365 - THE1B LTR MaLR 0 364 1 186 283 61 50 chr15 25277389 25277407 -60418347 + MIR SINE MIR 160 176 -86 2356 166 70 17 chr15 25277701 25278104 -60417650 - MSTB LTR MaLR -2 424 1 186 253 32 74 chr15 25279009 25279104 -60416650 + L3 LINE CR1 1412 1502 -75 279 299 248 0 chr15 25279631 25279788 -60415966 - MER91A DNA MER1_type 0 196 1 2119 138 0 0 chr15 25280030 25280327 -60415427 + AluSx SINE Alu 1 297 -15 186 167 0 0 chr15 25280737 25280773 -60414981 + T-rich Low_complexity Low_complexity 1 36 0 191 263 125 38 chr15 25281195 25281275 -60414479 - MIR SINE MIR -109 153 67 192 40 0 0 chr15 25282236 25282261 -60413493 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 2043 122 4 0 chr15 25282464 25282742 -60413012 + AluSp SINE Alu 3 281 -32 405 238 23 50 chr15 25283450 25283672 -60412082 + L1MD3 LINE L1 5290 7784 -196 23 54 0 0 chr15 25283672 25283709 -60412045 + AT_rich Low_complexity Low_complexity 1 37 0 533 327 118 2 chr15 25283893 25284322 -60411432 + L2 LINE L2 2580 3060 -212 343 302 9 28 chr15 25284352 25284458 -60411296 + L2 LINE L2 3165 3268 -4 293 286 44 0 chr15 25284462 25284553 -60411201 + L1ME LINE L1 5558 5652 -469 808 305 101 33 chr15 25285128 25285318 -60410436 - L1MC/D LINE L1 -775 5371 5195 2076 136 0 3 chr15 25285318 25285612 -60410142 + AluSx SINE Alu 1 293 -19 808 305 101 33 chr15 25285612 25286520 -60409234 - L1MC/D LINE L1 -951 5195 4542 233 343 146 24 chr15 25286747 25287123 -60408631 - L2 LINE L2 -815 2499 2078 2206 112 13 0 chr15 25287174 25287477 -60408277 + AluSp SINE Alu 7 313 0 605 333 0 0 chr15 25287574 25287748 -60408006 + MIR SINE MIR 34 207 -55 622 247 75 17 chr15 25288161 25288335 -60407419 - L1MC/D LINE L1 -2011 5797 5614 204 213 0 0 chr15 25291294 25291341 -60404413 + (CA)n Simple_repeat Simple_repeat 2 48 0 709 271 42 28 chr15 25291461 25291675 -60404079 + MIR SINE MIR 18 234 -28 814 293 19 0 chr15 25291972 25292187 -60403567 - LTR16C LTR ERVL -62 429 211 290 209 70 12 chr15 25292231 25292317 -60403437 - LTR16C LTR ERVL -364 127 37 1485 203 11 0 chr15 25292751 25293012 -60402742 + Tigger7 DNA MER2_type 1 264 -469 712 121 0 0 chr15 25293012 25293111 -60402643 + Tigger7 DNA MER2_type 2389 2487 0 2291 84 3 0 chr15 25293227 25293531 -60402223 + AluY SINE Alu 1 305 0 904 230 72 5 chr15 25294382 25294591 -60401163 - MER58A DNA MER1_type -1 223 1 643 288 106 0 chr15 25294930 25295166 -60400588 + MIR SINE MIR 2 262 0 328 282 86 17 chr15 25295978 25296095 -60399659 - MER5B DNA MER1_type 0 178 54 2228 113 3 0 chr15 25296116 25296408 -60399346 - AluSx SINE Alu -19 293 1 941 239 77 8 chr15 25296411 25296670 -60399084 - L1ME3A LINE L1 -2 6168 5892 566 163 69 15 chr15 25296662 25296796 -60398958 - L1MC3 LINE L1 -1 7765 6224 * 817 205 5 107 chr15 25296808 25297056 -60398698 - L1ME3A LINE L1 -274 5896 5673 236 234 21 0 chr15 25297058 25297105 -60398649 - MER5B DNA MER1_type -129 49 2 305 226 78 70 chr15 25297506 25297621 -60398133 - L1ME3A LINE L1 -781 5381 5266 1707 199 24 53 chr15 25297841 25298118 -60397636 - MLT1C LTR MaLR -8 459 196 1907 215 19 31 chr15 25298118 25298537 -60397217 + MLT2D LTR ERVL 1 414 0 1707 199 24 53 chr15 25298537 25298677 -60397077 - MLT1C LTR MaLR -271 196 54 252 330 31 21 chr15 25299042 25299139 -60396615 + MIR SINE MIR 22 119 -143 267 377 108 0 chr15 25299724 25299854 -60395900 + L2 LINE L2 3116 3259 -13 23 33 0 0 chr15 25302342 25302372 -60393382 + AT_rich Low_complexity Low_complexity 1 30 0 637 244 146 5 chr15 25302646 25302851 -60392903 + MIR SINE MIR 28 261 -1 1251 219 82 18 chr15 25303020 25303363 -60392391 - MLT1A1 LTR MaLR 0 365 1 652 275 141 23 chr15 25306145 25306622 -60389132 - L1ME4a LINE L1 -74 6047 5515 241 394 31 31 chr15 25306959 25307185 -60388569 + L2 LINE L2 2836 3061 -211 337 387 0 15 chr15 25308174 25308311 -60387443 + MIR SINE MIR 8 142 -120 * 776 262 145 21 chr15 25308309 25308599 -60387155 + L2 LINE L2 2988 3313 0 414 306 32 8 chr15 25310533 25310657 -60385097 - L2 LINE L2 -5 3267 3141 1202 313 153 45 chr15 25310703 25311986 -60383768 + L2 LINE L2 709 2130 -1184 355 291 95 29 chr15 25312014 25312224 -60383530 - L2 LINE L2 -634 2680 2457 350 309 21 0 chr15 25312439 25312536 -60383218 + L2 LINE L2 3173 3271 -1 509 267 23 0 chr15 25312582 25312713 -60383041 + MIR SINE MIR 92 225 -37 29 28 0 0 chr15 25312731 25312767 -60382987 + AT_rich Low_complexity Low_complexity 1 36 0 754 263 163 8 chr15 25313926 25314306 -60381448 - LTR16A LTR ERVL -3 447 9 22 35 0 0 chr15 25315595 25315624 -60380130 + AT_rich Low_complexity Low_complexity 1 29 0 2255 115 29 35 chr15 25316755 25317130 -60378624 + MER83C LTR ERV1 1 373 0 412 309 32 8 chr15 25317203 25317329 -60378425 - L2 LINE L2 0 3313 3185 280 289 125 79 chr15 25317335 25317485 -60378269 + MIR SINE MIR 8 164 -98 397 284 99 6 chr15 25317485 25317647 -60378107 - MER5B DNA MER1_type 0 178 2 413 276 16 24 chr15 25318053 25318176 -60377578 - MIR3 SINE MIR -23 185 64 271 235 0 0 chr15 25318240 25318291 -60377463 - Tigger5 DNA MER2_type 0 2323 2273 2111 116 3 7 chr15 25319316 25319601 -60376153 + AluSx SINE Alu 1 284 -28 225 65 0 0 chr15 25319604 25319635 -60376119 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 844 339 70 20 chr15 25319927 25320709 -60375045 + HAL1b LINE L1 15 835 -513 29 28 0 0 chr15 25320828 25320864 -60374890 + AT_rich Low_complexity Low_complexity 1 36 0 354 91 0 0 chr15 25321035 25321090 -60374664 + (TG)n Simple_repeat Simple_repeat 2 56 0 2238 209 75 87 chr15 25321107 25321624 -60374130 + L1MC5 LINE L1 6646 7150 -811 2937 85 78 9 chr15 25321624 25322007 -60373747 + MLT2A2 LTR ERVL 1 417 -36 338 100 17 0 chr15 25322007 25322067 -60373687 + (TA)n Simple_repeat Simple_repeat 2 62 0 2937 85 78 9 chr15 25322067 25322107 -60373647 + MLT2A2 LTR ERVL 417 453 0 2238 209 75 87 chr15 25322107 25322479 -60373275 + L1MC5 LINE L1 7150 7525 -436 346 238 30 152 chr15 25322567 25322669 -60373085 + L1ME3A LINE L1 5961 6021 -149 3139 25 0 0 chr15 25322669 25323034 -60372720 - L1PA5 LINE L1 -8 6146 5782 346 238 30 152 chr15 25323034 25323162 -60372592 + L1ME3A LINE L1 6021 6163 -7 187 216 0 0 chr15 25323334 25323371 -60372383 - L2 LINE L2 -14 3299 3263 902 141 0 22 chr15 25324021 25324205 -60371549 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 350 157 43 0 chr15 25324205 25324275 -60371479 + GA-rich Low_complexity Low_complexity 1 73 0 718 295 55 14 chr15 25324281 25324498 -60371256 - MIR SINE MIR -35 227 2 409 323 56 0 chr15 25324620 25324781 -60370973 + L2 LINE L2 2490 2659 -655 240 218 11 115 chr15 25327302 25327389 -60368365 + L2 LINE L2 3231 3308 -5 22 0 0 0 chr15 25327389 25327411 -60368343 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 25327484 25327529 -60368225 + AT_rich Low_complexity Low_complexity 1 45 0 505 209 96 140 chr15 25327635 25328041 -60367713 - L1ME4a LINE L1 -201 5920 5533 422 253 139 48 chr15 25328110 25328468 -60367286 - L1ME4a LINE L1 -743 5403 5039 25 0 0 0 chr15 25328476 25328501 -60367253 + AT_rich Low_complexity Low_complexity 1 25 0 258 299 23 0 chr15 25328579 25328666 -60367088 - L1ME4a LINE L1 -1301 4845 4757 24 77 0 0 chr15 25329478 25329530 -60366224 + AT_rich Low_complexity Low_complexity 1 52 0 373 314 50 0 chr15 25329530 25329651 -60366103 - MIR SINE MIR -58 204 78 902 291 8 0 chr15 25331260 25331501 -60364253 + MIR SINE MIR 18 260 -2 1856 124 40 20 chr15 25331769 25332067 -60363687 + AluSx SINE Alu 1 304 -8 49 34 0 34 chr15 25332163 25332252 -60363502 + AT_rich Low_complexity Low_complexity 1 86 0 26 50 0 0 chr15 25332610 25332650 -60363104 + AT_rich Low_complexity Low_complexity 1 40 0 283 296 11 11 chr15 25333122 25333210 -60362544 + MIR SINE MIR 16 103 -105 724 239 98 17 chr15 25333544 25333778 -60361976 + MARNA DNA Mariner 145 397 -189 25 31 0 0 chr15 25333951 25333983 -60361771 + AT_rich Low_complexity Low_complexity 1 32 0 338 257 178 6 chr15 25334054 25334200 -60361554 - MIR3 SINE MIR -36 172 3 238 298 84 53 chr15 25335121 25335252 -60360502 + MIR3 SINE MIR 9 143 -65 212 321 25 0 chr15 25335448 25335529 -60360225 + (TATG)n Simple_repeat Simple_repeat 3 85 0 2110 127 109 15 chr15 25335564 25335959 -60359795 + MSTB1 LTR MaLR 1 432 0 1037 320 90 6 chr15 25336236 25336756 -60358998 + L2 LINE L2 2751 3312 -1 404 259 124 51 chr15 25336774 25337122 -60358632 - MLT1F1 LTR MaLR -29 538 158 206 350 67 0 chr15 25337441 25337501 -60358253 + MIR SINE MIR 43 106 -102 201 244 0 44 chr15 25339878 25339923 -60355831 + MER91B DNA MER1_type 15 57 -133 22 0 0 0 chr15 25340493 25340515 -60355239 + AT_rich Low_complexity Low_complexity 1 22 0 203 274 244 36 chr15 25341243 25341411 -60354343 - L2 LINE L2 -1 3312 3110 208 139 0 0 chr15 25343741 25343777 -60351977 + (A)n Simple_repeat Simple_repeat 1 36 0 682 218 8 23 chr15 25344116 25344249 -60351505 + MER58B DNA MER1_type 211 341 0 2417 80 0 10 chr15 25345519 25345831 -60349923 + AluSg SINE Alu 1 309 -1 27 0 0 0 chr15 25346036 25346063 -60349691 + AT_rich Low_complexity Low_complexity 1 27 0 34 42 0 0 chr15 25347381 25347429 -60348325 + AT_rich Low_complexity Low_complexity 1 48 0 478 256 8 16 chr15 25348078 25348207 -60347547 + MER94 DNA DNA 5 132 -2 244 353 26 26 chr15 25351992 25352108 -60343646 + L2 LINE L2 3197 3312 -1 215 216 0 0 chr15 25353653 25353690 -60342064 + polypurine Low_complexity Low_complexity 5 41 0 36 40 0 0 chr15 25353715 25353765 -60341989 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 25354708 25354729 -60341025 + AT_rich Low_complexity Low_complexity 1 21 0 1565 188 116 19 chr15 25357119 25357592 -60338162 + Charlie1b DNA MER1_type 1 519 -4 26 0 0 0 chr15 25358594 25358620 -60337134 + AT_rich Low_complexity Low_complexity 1 26 0 248 254 105 39 chr15 25358756 25358937 -60336817 + L1ME4a LINE L1 1476 1668 -4728 378 283 108 26 chr15 25359420 25359798 -60335956 + L1ME4a LINE L1 2343 2751 -3464 418 247 113 34 chr15 25360027 25360266 -60335488 + L1ME4a LINE L1 5695 5952 -238 281 247 67 22 chr15 25360303 25360392 -60335362 + L1ME4a LINE L1 6025 6117 -73 221 231 0 0 chr15 25362087 25362126 -60333628 + (TG)n Simple_repeat Simple_repeat 2 40 0 315 49 0 0 chr15 25363141 25363182 -60332572 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 182 36 0 chr15 25363768 25363823 -60331931 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr15 25363827 25363853 -60331901 + AT_rich Low_complexity Low_complexity 1 26 0 503 248 47 8 chr15 25365383 25365512 -60330242 - MIR SINE MIR -48 214 81 428 264 77 26 chr15 25365531 25365588 -60330166 - MIR SINE MIR -49 213 160 14044 117 38 54 chr15 25365588 25368044 -60327710 + Tigger1 DNA MER2_type 2 2417 -1 428 264 77 26 chr15 25368044 25368141 -60327613 - MIR SINE MIR -102 160 51 23 0 0 0 chr15 25370720 25370743 -60325011 + AT_rich Low_complexity Low_complexity 1 23 0 2275 88 3 3 chr15 25373127 25373422 -60322332 - AluSg1 SINE Alu -14 295 1 2176 102 0 0 chr15 25373637 25373953 -60321801 - AluSx SINE Alu 0 316 1 250 298 0 36 chr15 25374053 25374137 -60321617 + MER5B DNA MER1_type 95 175 -3 24 32 0 0 chr15 25374974 25375005 -60320749 + AT_rich Low_complexity Low_complexity 1 31 0 10207 167 49 26 chr15 25375595 25375645 -60320109 + L1MA9 LINE L1 2995 3042 -3270 1967 158 0 3 chr15 25375645 25375949 -60319805 + AluSx SINE Alu 1 303 -9 10207 167 49 26 chr15 25375949 25379142 -60316612 + L1MA9 LINE L1 3042 6307 -5 207 0 0 0 chr15 25379747 25379770 -60315984 + (A)n Simple_repeat Simple_repeat 1 23 0 301 300 162 67 chr15 25381331 25381764 -60313990 - L1M2 LINE L1 -5825 1024 551 339 65 0 0 chr15 25382933 25382979 -60312775 + (CA)n Simple_repeat Simple_repeat 1 46 0 389 268 96 18 chr15 25383067 25383231 -60312523 + MIR SINE MIR 17 191 -71 236 170 189 0 chr15 25383624 25383677 -60312077 - MER58A DNA MER1_type -38 69 7 429 206 165 0 chr15 25383677 25383774 -60311980 + MER96B DNA MER1_type? 305 417 0 2102 82 4 0 chr15 25384022 25384337 -60311417 - AluY SINE Alu 0 316 1 1028 245 139 44 chr15 25384633 25385065 -60310689 - MLT1J LTR MaLR 0 511 39 197 178 22 0 chr15 25385610 25385655 -60310099 + CT-rich Low_complexity Low_complexity 1 46 0 333 263 109 34 chr15 25386785 25386960 -60308794 - MER95 LTR ERV -4 427 240 4962 172 31 7 chr15 25387952 25388991 -60306763 + L1MC2 LINE L1 5186 6331 -13 2184 99 0 35 chr15 25390146 25390459 -60305295 + AluSg SINE Alu 1 302 -8 207 281 88 0 chr15 25392528 25392585 -60303169 + L2 LINE L2 3162 3223 -49 2222 120 0 0 chr15 25393360 25393668 -60302086 - AluSx SINE Alu -4 308 1 448 275 161 7 chr15 25393686 25393835 -60301919 + MER5A DNA MER1_type 18 189 0 246 105 0 0 chr15 25394401 25394439 -60301315 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr15 25398262 25398293 -60297461 + AT_rich Low_complexity Low_complexity 1 31 0 359 276 41 8 chr15 25398572 25398695 -60297059 - L3 LINE CR1 -260 1317 1191 334 380 75 21 chr15 25398889 25399168 -60296586 + L2 LINE L2 2323 2616 -698 236 340 142 7 chr15 25399522 25399663 -60296091 + MIR SINE MIR 97 256 -6 1402 335 120 20 chr15 25399843 25400709 -60295045 - L3 LINE CR1 -505 1072 120 854 295 29 70 chr15 25400990 25401404 -60294350 + L2 LINE L2 2917 3313 0 210 220 0 40 chr15 25402200 25402250 -60293504 - L2 LINE L2 -5 3308 3261 1342 307 32 2 chr15 25402754 25403158 -60292596 - LTR16A LTR ERVL 0 450 35 22 70 0 0 chr15 25404086 25404129 -60291625 + AT_rich Low_complexity Low_complexity 1 43 0 243 327 88 18 chr15 25406044 25406157 -60289597 + MIR3 SINE MIR 5 125 -83 237 268 37 85 chr15 25406271 25406353 -60289401 + MIR SINE MIR 29 106 -102 210 339 16 74 chr15 25406550 25406671 -60289083 + MIR3 SINE MIR 87 200 -8 460 300 25 80 chr15 25406798 25406998 -60288756 - MIR SINE MIR -66 196 8 864 232 18 36 chr15 25408737 25408957 -60286797 - MIR SINE MIR -43 219 4 2097 125 0 10 chr15 25409252 25409548 -60286206 + AluSx SINE Alu 2 294 -18 1872 155 40 10 chr15 25412123 25412419 -60283335 - AluJo SINE Alu -7 305 1 2295 85 0 17 chr15 25412880 25413174 -60282580 - AluSp SINE Alu -24 289 1 224 226 38 0 chr15 25413892 25413945 -60281809 + A-rich Low_complexity Low_complexity 4 58 0 1906 145 10 35 chr15 25414382 25414692 -60281062 + AluSq SINE Alu 3 304 -9 21 0 0 0 chr15 25414846 25414867 -60280887 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr15 25415970 25416039 -60279715 + AT_rich Low_complexity Low_complexity 1 69 0 476 267 48 24 chr15 25416723 25416997 -60278757 - MIR SINE MIR 0 262 20 2294 82 24 0 chr15 25417309 25417478 -60278276 - AluY SINE Alu -10 301 121 182 0 107 0 chr15 25417478 25417506 -60278248 + T-rich Low_complexity Low_complexity 5 35 0 2294 82 24 0 chr15 25417506 25417630 -60278124 - AluY SINE Alu -190 121 1 180 0 0 0 chr15 25418080 25418100 -60277654 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 341 250 20 40 chr15 25418531 25418683 -60277071 + L1MC5 LINE L1 7758 7906 -55 22 0 0 0 chr15 25419013 25419035 -60276719 + AT_rich Low_complexity Low_complexity 1 22 0 1178 154 23 0 chr15 25420738 25420959 -60274795 + MER33 DNA MER1_type 1 226 -98 1952 171 0 9 chr15 25421601 25421916 -60273838 - AluJb SINE Alu 0 312 1 185 310 35 0 chr15 25421917 25421975 -60273779 - L2 LINE L2 -8 3264 3205 1924 137 6 44 chr15 25423069 25423390 -60272364 + AluSc SINE Alu 1 309 0 511 80 45 0 chr15 25423398 25423486 -60272268 + GA-rich Low_complexity Low_complexity 1 92 0 833 150 0 0 chr15 25423577 25423710 -60272044 + AluJo/FLAM SINE Alu 1 133 -169 268 81 0 0 chr15 25423710 25423747 -60272007 + AluSg/x SINE Alu 133 169 -133 1359 122 0 5 chr15 25423747 25423935 -60271819 + AluSg/x SINE Alu 116 302 -10 492 18 0 0 chr15 25423935 25423992 -60271762 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 41 0 0 0 chr15 25426256 25426297 -60269457 + AT_rich Low_complexity Low_complexity 1 41 0 189 74 0 0 chr15 25426394 25426421 -60269333 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 191 340 50 0 chr15 25426868 25426968 -60268786 + MIR SINE MIR 83 187 -75 384 304 107 36 chr15 25427023 25427191 -60268563 - MER5A DNA MER1_type -3 186 7 1419 222 75 53 chr15 25428077 25428622 -60267132 - MER34B LTR ERV1 0 565 9 192 288 15 30 chr15 25428871 25428937 -60266817 - MIR SINE MIR -3 259 195 720 176 17 0 chr15 25429252 25429371 -60266383 + FLAM_A SINE Alu 1 121 -12 180 269 0 96 chr15 25431936 25431988 -60263766 + L3 LINE CR1 1022 1068 -509 228 200 20 0 chr15 25432358 25432408 -60263346 + (TA)n Simple_repeat Simple_repeat 1 51 0 215 157 20 0 chr15 25432508 25432559 -60263195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 25432636 25432658 -60263096 + AT_rich Low_complexity Low_complexity 1 22 0 445 363 15 25 chr15 25433244 25433445 -60262309 + MIR SINE MIR 8 206 -56 395 261 85 26 chr15 25435014 25435167 -60260587 - L2 LINE L2 0 3313 3152 672 251 68 0 chr15 25435275 25435438 -60260316 + MIR SINE MIR 2 175 -87 2231 107 17 0 chr15 25435543 25435843 -60259911 + AluSg SINE Alu 1 305 -5 328 315 86 31 chr15 25435860 25436022 -60259732 - L2 LINE L2 -219 3053 2883 343 326 101 17 chr15 25436957 25437135 -60258619 + MIR SINE MIR 20 212 -50 365 323 0 12 chr15 25437583 25437747 -60258007 + T-rich Low_complexity Low_complexity 2 163 0 216 263 42 0 chr15 25437954 25438049 -60257705 + (TG)n Simple_repeat Simple_repeat 1 99 0 2280 75 0 33 chr15 25438268 25438573 -60257181 + AluSx SINE Alu 1 295 -17 180 125 0 0 chr15 25439154 25439186 -60256568 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 780 178 0 22 chr15 25439332 25439467 -60256287 + FLAM_A SINE Alu 1 132 -1 25 0 0 0 chr15 25439507 25439532 -60256222 + AT_rich Low_complexity Low_complexity 1 25 0 752 245 10 20 chr15 25439699 25439899 -60255855 - MLT1J LTR MaLR -307 204 7 384 22 0 0 chr15 25439900 25439945 -60255809 + (CA)n Simple_repeat Simple_repeat 2 46 0 247 318 36 27 chr15 25440101 25440211 -60255543 - L2 LINE L2 -217 3055 2945 400 216 189 27 chr15 25440335 25440446 -60255308 + L2 LINE L2 3185 3313 0 193 306 0 0 chr15 25440526 25440575 -60255179 - MIR SINE MIR -139 123 75 448 339 132 32 chr15 25440770 25441080 -60254674 - L2 LINE L2 -21 3251 2911 29 28 0 0 chr15 25441125 25441161 -60254593 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr15 25441429 25441465 -60254289 + AT_rich Low_complexity Low_complexity 1 36 0 247 315 38 102 chr15 25441551 25441786 -60253968 - L2 LINE L2 -531 2783 2564 406 251 131 27 chr15 25441838 25442021 -60253733 + MER112 DNA MER1_type 12 213 -47 197 318 171 29 chr15 25442033 25442379 -60253375 - L2 LINE L2 -941 2373 1979 1691 175 3 14 chr15 25443037 25443357 -60252397 + AluJb SINE Alu 1 317 0 2168 114 0 0 chr15 25443468 25443758 -60251996 - AluSx SINE Alu -22 290 1 853 101 14 0 chr15 25443818 25443966 -60251788 + (TA)n Simple_repeat Simple_repeat 2 151 0 22 0 0 0 chr15 25444547 25444569 -60251185 + AT_rich Low_complexity Low_complexity 1 22 0 1734 187 3 0 chr15 25446328 25446622 -60249132 + AluJo SINE Alu 1 295 -17 306 315 87 7 chr15 25446993 25447142 -60248612 + L3 LINE CR1 1353 1513 -64 2214 104 3 0 chr15 25447183 25447490 -60248264 + AluSg1 SINE Alu 1 308 -1 353 250 257 7 chr15 25447804 25447952 -60247802 + L1ME LINE L1 5582 5766 -355 3437 125 13 47 chr15 25449053 25449670 -60246084 - L1PA16 LINE L1 -9 6157 5562 22 0 0 0 chr15 25450272 25450294 -60245460 + AT_rich Low_complexity Low_complexity 1 22 0 2152 112 10 0 chr15 25450306 25450609 -60245145 + AluSx SINE Alu 1 306 -6 359 272 72 33 chr15 25451612 25451792 -60243962 + MER5A DNA MER1_type 2 188 -1 22 0 0 0 chr15 25452128 25452150 -60243604 + AT_rich Low_complexity Low_complexity 1 22 0 1873 144 14 3 chr15 25452568 25452852 -60242902 + AluSq SINE Alu 1 287 -26 21 0 0 0 chr15 25452852 25452873 -60242881 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr15 25454484 25454515 -60241239 + (CA)n Simple_repeat Simple_repeat 1 31 0 2367 95 7 0 chr15 25455730 25456035 -60239719 + AluSq SINE Alu 1 307 -6 343 219 337 0 chr15 25456036 25456195 -60239559 - MIR SINE MIR 0 262 52 219 256 0 0 chr15 25456264 25456303 -60239451 - L2 LINE L2 -79 3193 3155 196 302 0 0 chr15 25456441 25456494 -60239260 + L2 LINE L2 3261 3313 0 21 0 0 0 chr15 25456504 25456525 -60239229 + AT_rich Low_complexity Low_complexity 1 21 0 3147 211 90 10 chr15 25457008 25458152 -60237602 - L1ME1 LINE L1 -15 6151 4923 342 0 0 0 chr15 25458400 25458438 -60237316 + (A)n Simple_repeat Simple_repeat 1 38 0 2422 53 0 10 chr15 25458447 25458746 -60237008 + AluY SINE Alu 1 296 -15 2270 116 0 0 chr15 25458965 25459267 -60236487 + AluSc SINE Alu 1 302 -7 2598 106 3 16 chr15 25460249 25460618 -60235136 - THE1B LTR MaLR 0 364 1 10635 84 38 46 chr15 25460618 25461887 -60233867 - THE1B-int LTR MaLR 0 1580 324 2869 0 0 0 chr15 25461887 25462194 -60233560 + AluYa5 SINE Alu 1 307 -4 10635 84 38 46 chr15 25462194 25462514 -60233240 - THE1B-int LTR MaLR -1256 324 3 948 137 7 15 chr15 25462514 25462769 -60232985 - THE1B LTR MaLR -5 359 1 261 299 91 47 chr15 25463305 25463603 -60232151 + L3b LINE CR1 1107 1417 -166 24 0 0 0 chr15 25463767 25463791 -60231963 + AT_rich Low_complexity Low_complexity 1 24 0 2015 118 11 0 chr15 25463797 25464067 -60231687 + AluSx SINE Alu 5 277 -35 252 0 0 0 chr15 25464067 25464095 -60231659 + (TAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr15 25464156 25464191 -60231563 + (CA)n Simple_repeat Simple_repeat 1 35 0 413 314 14 67 chr15 25464230 25464440 -60231314 - MIR SINE MIR -18 244 46 684 325 8 17 chr15 25465596 25465836 -60229918 + MIR SINE MIR 25 262 0 338 192 14 0 chr15 25467278 25467351 -60228403 - MER116 DNA Mariner 0 80 7 1820 162 14 0 chr15 25467491 25467796 -60227958 - AluJo SINE Alu 0 309 1 313 266 92 58 chr15 25469579 25469617 -60226137 - MIR3 SINE MIR -13 195 160 1390 172 32 3 chr15 25469617 25469925 -60225829 - MER33 DNA MER1_type -4 320 4 313 266 92 58 chr15 25469925 25470059 -60225695 - MIR3 SINE MIR -48 160 17 316 258 0 54 chr15 25470318 25470411 -60225343 + MER5A DNA MER1_type 9 96 -93 22 70 0 0 chr15 25472618 25472661 -60223093 + AT_rich Low_complexity Low_complexity 1 43 0 575 305 25 15 chr15 25474169 25474372 -60221382 - MIR SINE MIR -55 207 3 28 29 0 0 chr15 25474402 25474437 -60221317 + AT_rich Low_complexity Low_complexity 1 35 0 195 205 34 17 chr15 25474455 25474572 -60221182 + (TA)n Simple_repeat Simple_repeat 1 119 0 2230 93 42 0 chr15 25474729 25475018 -60220736 + AluSq SINE Alu 3 303 -10 2033 137 3 3 chr15 25476204 25476512 -60219242 - AluSx SINE Alu 0 308 1 1555 163 121 69 chr15 25476543 25476611 -60219143 - MLT1D LTR MaLR 0 505 442 2008 139 24 0 chr15 25476611 25476906 -60218848 + AluSx SINE Alu 1 302 -10 1555 163 121 69 chr15 25476906 25477317 -60218437 - MLT1D LTR MaLR -63 442 1 554 174 87 9 chr15 25478451 25478566 -60217188 - L2 LINE L2 -1 3312 3189 1253 351 106 34 chr15 25479112 25480107 -60215647 - L2 LINE L2 -12 3260 2072 2364 128 26 10 chr15 25480107 25480491 -60215263 + MLT1B LTR MaLR 1 390 0 1253 351 106 34 chr15 25480491 25481182 -60214572 - L2 LINE L2 -1200 2072 1433 767 40 0 0 chr15 25481945 25482044 -60213710 + AluY SINE Alu 198 296 -15 538 247 147 6 chr15 25482047 25482217 -60213537 - MIR SINE MIR -18 244 51 203 246 0 0 chr15 25484296 25484357 -60211397 + CT-rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr15 25484622 25484649 -60211105 + (CA)n Simple_repeat Simple_repeat 1 27 0 885 275 16 8 chr15 25484851 25485102 -60210652 + MIR SINE MIR 6 258 -4 447 227 126 33 chr15 25485338 25485520 -60210234 + MIR SINE MIR 15 212 -50 415 235 188 20 chr15 25486706 25486855 -60208899 + MIR SINE MIR 76 249 -13 365 296 23 0 chr15 25487059 25487147 -60208607 - MIR SINE MIR -116 146 57 1770 175 31 0 chr15 25488425 25488716 -60207038 - AluJb SINE Alu -12 300 1 370 279 47 28 chr15 25492707 25492878 -60202876 + MIR3 SINE MIR 3 177 -31 320 77 19 0 chr15 25493180 25493232 -60202522 + (TA)n Simple_repeat Simple_repeat 2 54 0 6698 107 55 32 chr15 25493306 25494483 -60201271 - Tigger3b DNA MER2_type -27 1204 1 829 210 45 104 chr15 25494654 25495011 -60200743 + L1MC4 LINE L1 7702 8037 -5 264 184 55 18 chr15 25495033 25495142 -60200612 + (TA)n Simple_repeat Simple_repeat 1 113 0 1598 196 32 40 chr15 25496302 25496679 -60199075 - MLT1A2 LTR MaLR 0 374 1 1642 195 25 0 chr15 25496705 25496987 -60198767 - AluJb SINE Alu -22 290 2 25 0 0 0 chr15 25497071 25497096 -60198658 + AT_rich Low_complexity Low_complexity 1 25 0 1871 144 27 7 chr15 25497547 25497845 -60197909 + AluJb SINE Alu 6 309 -3 2184 123 7 0 chr15 25497847 25498157 -60197597 + AluSx SINE Alu 1 312 0 1763 174 7 3 chr15 25498670 25498990 -60196764 - AluJo SINE Alu 0 312 1 492 256 7 29 chr15 25499785 25499922 -60195832 - MER91A DNA MER1_type -36 160 27 23 54 0 0 chr15 25500456 25500493 -60195261 + AT_rich Low_complexity Low_complexity 1 37 0 295 221 58 0 chr15 25500730 25500816 -60194938 - MLT1L LTR MaLR 0 615 525 1652 179 27 7 chr15 25503830 25504131 -60191623 + AluJo SINE Alu 1 307 -5 337 319 0 35 chr15 25505774 25505887 -60189867 + L3 LINE CR1 1455 1563 -14 2903 10 0 0 chr15 25506119 25506431 -60189323 + AluYb8 SINE Alu 1 312 -6 202 241 35 35 chr15 25507027 25507085 -60188669 + L2 LINE L2 3205 3262 -10 190 273 61 0 chr15 25508200 25508266 -60187488 - L2 LINE L2 -566 2748 2679 1053 250 143 41 chr15 25508278 25508670 -60187084 - LTR16A LTR ERVL 0 450 19 26 0 0 0 chr15 25509246 25509272 -60186482 + AT_rich Low_complexity Low_complexity 1 26 0 1588 204 3 14 chr15 25509272 25509561 -60186193 - AluJo SINE Alu -26 286 1 302 281 18 46 chr15 25509566 25509675 -60186079 + MER5A DNA MER1_type 49 143 -35 288 364 29 29 chr15 25509697 25509837 -60185917 + L2 LINE L2 2181 2320 -994 1933 135 44 0 chr15 25509906 25510202 -60185552 - AluSx SINE Alu -3 309 1 526 75 0 86 chr15 25510246 25510339 -60185415 + Alu SINE Alu 226 310 0 339 274 89 55 chr15 25511022 25511259 -60184495 + L1 LINE L1 2266 2510 -3636 2151 134 3 6 chr15 25511277 25511591 -60184163 - AluSq SINE Alu 0 313 1 236 282 80 41 chr15 25511709 25512074 -60183680 + L1 LINE L1 2675 3053 -3093 398 320 64 51 chr15 25512147 25512381 -60183373 + MIR SINE MIR 8 244 -18 339 302 68 68 chr15 25512639 25513050 -60182704 + L1 LINE L1 3411 3821 -2325 207 0 0 0 chr15 25513713 25513736 -60182018 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1493 173 14 38 chr15 25513739 25514028 -60181726 - AluJo SINE Alu -30 282 1 645 183 0 0 chr15 25514203 25514307 -60181447 - MLT1E1 LTR MaLR 0 654 551 257 0 30 0 chr15 25514311 25514344 -60181410 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 841 102 0 0 chr15 25514344 25514452 -60181302 - FLAM_C SINE Alu -22 121 14 1102 191 87 72 chr15 25514462 25514736 -60181018 - MLT1E1 LTR MaLR -97 557 214 2214 120 0 3 chr15 25514736 25515044 -60180710 + AluSx SINE Alu 1 307 -5 1102 191 87 72 chr15 25515044 25515208 -60180546 - MLT1E1 LTR MaLR -440 214 54 1931 138 0 63 chr15 25516407 25516740 -60179014 + AluJb SINE Alu 1 312 0 1496 254 114 85 chr15 25516864 25517823 -60177931 + L2 LINE L2 2327 3313 0 2160 127 17 0 chr15 25518022 25518322 -60177432 - AluSx SINE Alu -7 305 1 2061 102 14 3 chr15 25518328 25518621 -60177133 - AluSg SINE Alu -14 296 1 237 243 36 136 chr15 25518958 25519098 -60176656 - LTR28 LTR ERV1 -47 973 848 493 185 27 68 chr15 25519130 25519276 -60176478 - LTR1B LTR ERV1 -344 482 343 453 261 104 17 chr15 25519314 25519527 -60176227 - LTR1 LTR ERV1 -564 221 28 1663 207 117 46 chr15 25519616 25520019 -60175735 + MER92C LTR ERV1 1 439 -115 2155 130 0 7 chr15 25520019 25520327 -60175427 + AluSx SINE Alu 1 306 -6 1663 207 117 46 chr15 25520327 25520357 -60175397 + MER92C LTR ERV1 439 465 -89 2054 195 41 57 chr15 25520357 25520522 -60175232 + MLT1D LTR MaLR 1 167 -338 901 121 38 8 chr15 25520522 25520679 -60175075 - L1PA10 LINE L1 0 6168 6032 2054 195 41 57 chr15 25520679 25521026 -60174728 + MLT1D LTR MaLR 167 505 0 438 161 37 12 chr15 25521031 25521112 -60174642 + MER92C LTR ERV1 470 552 -2 422 304 176 2 chr15 25521112 25521343 -60174411 - L2 LINE L2 -312 3001 2732 2223 114 0 3 chr15 25521384 25521691 -60174063 + AluSc SINE Alu 1 306 -3 540 266 11 43 chr15 25521808 25521996 -60173758 - LTR33 LTR ERVL -11 510 329 540 318 6 6 chr15 25522068 25522244 -60173510 - LTR33 LTR ERVL -333 188 13 2105 204 22 32 chr15 25523832 25524336 -60171418 + MLT1D LTR MaLR 1 499 -6 1742 63 0 30 chr15 25524939 25525176 -60170578 - AluY SINE Alu -3 308 79 3676 112 10 51 chr15 25525310 25525457 -60170297 - Tigger4(Zombi) DNA MER2_type 0 2731 2580 2937 9 0 0 chr15 25525457 25525773 -60169981 - AluYb8 SINE Alu -2 316 1 3676 112 10 51 chr15 25525773 25526213 -60169541 - Tigger4(Zombi) DNA MER2_type -151 2580 2168 867 169 56 0 chr15 25526215 25526375 -60169379 - Tigger4(Zombi) DNA MER2_type -2559 172 4 395 252 82 7 chr15 25527034 25527169 -60168585 - MER103 DNA DNA -1 165 21 1693 181 0 23 chr15 25527360 25527659 -60168095 - AluJb SINE Alu -20 292 1 832 216 44 5 chr15 25528099 25528417 -60167337 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr15 25529318 25529339 -60166415 + AT_rich Low_complexity Low_complexity 1 21 0 709 80 44 53 chr15 25529339 25529452 -60166302 - HY1 scRNA scRNA 0 112 1 2156 131 0 13 chr15 25529822 25530134 -60165620 - AluSx SINE Alu -4 308 1 1359 241 153 38 chr15 25530626 25531156 -60164598 + Charlie2 DNA MER1_type 1 591 -2191 25 0 0 0 chr15 25531491 25531516 -60164238 + AT_rich Low_complexity Low_complexity 1 25 0 303 241 105 43 chr15 25531641 25531803 -60163951 - L2 LINE L2 -100 3213 3042 205 192 370 41 chr15 25531804 25531950 -60163804 - L2 LINE L2 -1148 2166 1973 1258 172 180 16 chr15 25532040 25532284 -60163470 + AluJb SINE Alu 1 284 -18 745 265 35 48 chr15 25532342 25532520 -60163234 + MIR SINE MIR 9 188 -74 1914 137 0 20 chr15 25532520 25532819 -60162935 - AluJo SINE Alu -19 293 1 2445 76 3 0 chr15 25532821 25533125 -60162629 - AluSp SINE Alu -8 305 1 745 265 35 48 chr15 25533125 25533173 -60162581 + MIR SINE MIR 189 235 -27 2137 61 71 0 chr15 25533362 25533642 -60162112 + AluSp SINE Alu 1 300 -13 250 326 0 0 chr15 25534185 25534283 -60161471 + HAL1 LINE L1 1634 1731 -776 207 298 0 0 chr15 25534334 25534391 -60161363 - L2 LINE L2 -1062 2252 2196 21 0 0 0 chr15 25535667 25535688 -60160066 + GC_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr15 25536138 25536173 -60159581 + GC_rich Low_complexity Low_complexity 1 35 0 198 324 0 27 chr15 25536697 25536771 -60158983 - MIR SINE MIR -43 219 148 181 271 0 42 chr15 25536949 25536997 -60158757 + MER5B DNA MER1_type 111 156 -22 437 226 0 0 chr15 25537672 25537765 -60157989 + MIR SINE MIR 170 262 0 223 304 95 19 chr15 25539368 25539526 -60156228 + L2 LINE L2 1656 1825 -1489 529 265 158 10 chr15 25541133 25541329 -60154425 + MIR SINE MIR 11 235 -27 540 285 61 57 chr15 25542213 25542526 -60153228 + L1ME LINE L1 5285 5600 -521 1338 196 83 4 chr15 25542635 25542911 -60152843 + AluJo SINE Alu 1 298 -14 283 357 89 13 chr15 25543161 25543385 -60152369 - L3b LINE CR1 -84 1499 1259 702 156 89 45 chr15 25544027 25544244 -60151510 + L1MB8 LINE L1 5959 6178 0 289 208 0 0 chr15 25547038 25547086 -60148668 - MER112 DNA MER1_type -35 225 178 214 208 75 45 chr15 25547358 25547432 -60148322 - MIR SINE MIR -63 145 75 919 209 166 25 chr15 25547432 25547752 -60148002 - MLT1A1 LTR MaLR 0 365 1 214 208 75 45 chr15 25547752 25547816 -60147938 - MIR SINE MIR -133 75 2 2186 104 3 3 chr15 25548089 25548377 -60147377 + AluSx SINE Alu 1 288 -24 483 238 125 102 chr15 25548638 25548991 -60146763 - L1ME3A LINE L1 -34 6119 5759 454 272 46 51 chr15 25549004 25549199 -60146555 - L1ME3A LINE L1 -2346 3783 3590 314 157 0 29 chr15 25549213 25549283 -60146471 + C-rich Low_complexity Low_complexity 5 72 0 289 209 74 47 chr15 25549371 25549540 -60146214 - L1MEd LINE L1 -4865 1254 1174 2646 153 19 53 chr15 25549622 25550150 -60145604 - L1MC1 LINE L1 -18 6315 5806 2378 191 62 11 chr15 25550174 25550725 -60145029 - L1MC1 LINE L1 -844 5302 4724 2354 73 33 3 chr15 25550744 25551045 -60144709 - AluSq SINE Alu -3 310 1 609 158 58 0 chr15 25551103 25551223 -60144531 - MLT1C LTR MaLR -340 127 1 801 219 123 0 chr15 25551236 25551487 -60144267 - L1MC1 LINE L1 -2447 3699 3418 2445 108 128 10 chr15 25551488 25551525 -60144229 - MLT2A1 LTR ERVL -8 436 405 189 0 0 0 chr15 25551525 25551546 -60144208 + (TA)n Simple_repeat Simple_repeat 2 22 0 2445 108 128 10 chr15 25551546 25551898 -60143856 - MLT2A1 LTR ERVL -39 405 1 1153 236 31 31 chr15 25551898 25551993 -60143761 - L1MC1 LINE L1 -2721 3425 3331 2078 119 3 38 chr15 25551993 25552313 -60143441 - AluSc SINE Alu 0 309 1 1153 236 31 31 chr15 25552313 25552640 -60143114 - L1MC1 LINE L1 -2814 3332 3003 1896 98 0 42 chr15 25553676 25553961 -60141793 + L1PB1 LINE L1 5879 6151 0 2024 157 14 40 chr15 25553999 25554350 -60141404 - MER2 DNA MER2_type -2 342 1 1911 107 70 0 chr15 25554545 25554846 -60140908 - AluSx SINE Alu 0 312 1 2365 62 10 3 chr15 25555259 25555550 -60140204 + AluY SINE Alu 1 293 -18 2292 90 3 26 chr15 25555714 25556026 -60139728 - AluSg SINE Alu -5 305 1 22 0 0 0 chr15 25556076 25556098 -60139656 + AT_rich Low_complexity Low_complexity 1 22 0 209 396 57 0 chr15 25556228 25556387 -60139367 + MIR3 SINE MIR 34 201 -7 451 319 71 0 chr15 25556598 25556780 -60138974 + MIR SINE MIR 67 261 -1 1548 142 26 122 chr15 25557169 25557514 -60138240 + AluJo SINE Alu 1 312 0 2247 86 0 0 chr15 25557535 25557838 -60137916 + AluSc SINE Alu 1 303 0 196 350 19 29 chr15 25557888 25557991 -60137763 - MIR SINE MIR -68 140 39 2321 98 3 0 chr15 25559670 25559967 -60135787 - AluSx SINE Alu -14 298 1 710 219 5 62 chr15 25560436 25560628 -60135126 - L1MC5 LINE L1 -39 7922 7742 372 22 0 0 chr15 25560911 25560956 -60134798 + (TG)n Simple_repeat Simple_repeat 1 45 0 2347 98 0 7 chr15 25561447 25561753 -60134001 + AluSq SINE Alu 1 304 -9 1216 156 39 34 chr15 25563875 25564080 -60131674 + AluJb SINE Alu 86 291 -21 978 151 0 13 chr15 25564769 25564928 -60130826 + AluSc SINE Alu 148 304 -5 2268 88 7 3 chr15 25565025 25565319 -60130435 - AluY SINE Alu -16 295 1 856 242 167 71 chr15 25565403 25566080 -60129674 - HAL1 LINE L1 -74 2433 1692 2327 107 0 0 chr15 25566100 25566410 -60129344 - AluSq SINE Alu -3 310 1 1349 229 122 54 chr15 25566416 25566957 -60128797 - L1ME2 LINE L1 0 6164 5587 1196 54 0 13 chr15 25567035 25567184 -60128570 - L1PA5 LINE L1 0 6154 6008 1245 54 0 0 chr15 25567184 25567333 -60128421 + L1P2 LINE L1 5634 5782 -373 267 313 0 0 chr15 25567410 25567474 -60128280 - MLT1J2 LTR MaLR -120 330 267 321 261 97 17 chr15 25567529 25567679 -60128075 - MLT1J2 LTR MaLR -264 145 1 816 263 89 58 chr15 25567679 25569096 -60126658 - HAL1 LINE L1 -854 1653 4 201 39 0 0 chr15 25569459 25569485 -60126269 + (TAA)n Simple_repeat Simple_repeat 2 27 0 125 14 0 0 chr15 25569485 25569624 -60126130 + AT_rich Low_complexity Low_complexity 1 139 0 303 293 38 9 chr15 25569723 25569829 -60125925 + L2 LINE L2 3164 3272 0 211 372 16 33 chr15 25569894 25570015 -60125739 + MIR SINE MIR 30 148 -114 884 231 0 6 chr15 25570046 25570206 -60125548 - FRAM SINE Alu -21 155 1 187 333 119 23 chr15 25570790 25570967 -60124787 + MIR SINE MIR 18 211 -51 2339 103 0 0 chr15 25571560 25571861 -60123893 - AluSg1 SINE Alu -8 301 1 2239 121 0 13 chr15 25572318 25572632 -60123122 + AluSq SINE Alu 1 310 -3 2324 96 26 3 chr15 25573744 25574047 -60121707 + AluSg SINE Alu 1 310 0 912 256 12 0 chr15 25574884 25575056 -60120698 - FAM SINE Alu -1 174 1 326 301 135 0 chr15 25576101 25576257 -60119497 + MIR SINE MIR 24 200 -62 225 0 0 0 chr15 25576453 25576478 -60119276 + (T)n Simple_repeat Simple_repeat 1 25 0 289 171 14 43 chr15 25577123 25577193 -60118561 - MER117 DNA MER1_type -84 113 46 2384 129 22 25 chr15 25579525 25579890 -60115864 + THE1B LTR MaLR 1 364 0 12699 89 1 18 chr15 25579890 25581497 -60114257 + THE1B-int LTR MaLR 1 1580 0 2270 111 60 29 chr15 25581500 25581850 -60113904 + THE1B LTR MaLR 4 364 0 216 214 0 43 chr15 25582008 25582078 -60113676 + CT-rich Low_complexity Low_complexity 2 68 0 300 311 163 25 chr15 25582414 25582610 -60113144 + HAL1 LINE L1 1561 1783 -724 2777 185 11 17 chr15 25582761 25583236 -60112518 + MER70A LTR ERVL 1 472 0 226 345 0 0 chr15 25583414 25583501 -60112253 + HAL1 LINE L1 2078 2164 -343 2387 113 25 17 chr15 25583971 25584333 -60111421 - THE1C LTR MaLR 0 375 11 180 0 0 0 chr15 25585580 25585600 -60110154 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1347 259 116 25 chr15 25585664 25586223 -60109531 - MLT1L LTR MaLR -5 610 1 266 271 60 99 chr15 25586881 25587183 -60108571 - MLT1I LTR MaLR -22 387 98 653 230 87 6 chr15 25587209 25587370 -60108384 - MER21B LTR ERV1 -54 809 636 1690 232 18 15 chr15 25587450 25587790 -60107964 - MER21B LTR ERV1 -514 349 9 253 261 14 14 chr15 25587794 25587863 -60107891 - MLT1I LTR MaLR -300 109 41 234 333 86 19 chr15 25587980 25588142 -60107612 + L3 LINE CR1 994 1166 -411 2279 87 3 3 chr15 25589774 25590073 -60105681 + AluSg SINE Alu 1 299 -11 576 260 28 39 chr15 25590082 25590263 -60105491 + MIR SINE MIR 10 188 -74 244 289 221 7 chr15 25590314 25590463 -60105291 - MLT1K LTR MaLR -6 582 402 1685 201 66 81 chr15 25590465 25590947 -60104807 + MLT1F LTR MaLR 1 475 -67 1442 162 8 12 chr15 25590947 25591194 -60104560 + MER47A DNA MER2_type 1 246 -120 613 267 34 0 chr15 25591194 25591340 -60104414 - MIR SINE MIR -105 157 7 2110 131 0 0 chr15 25591412 25591703 -60104051 - AluSx SINE Alu -3 309 19 203 256 0 0 chr15 25593426 25593469 -60102285 + CT-rich Low_complexity Low_complexity 3 45 0 213 39 0 0 chr15 25594273 25594299 -60101455 + (T)n Simple_repeat Simple_repeat 1 26 0 491 235 83 30 chr15 25594735 25594867 -60100887 - L2 LINE L2 0 3272 3134 263 174 36 167 chr15 25595442 25595580 -60100174 - L1ME3A LINE L1 -88 6082 5963 307 243 0 14 chr15 25595587 25595657 -60100097 - L1MCa LINE L1 -4352 2074 2006 303 292 11 11 chr15 25595626 25595715 -60100039 - L1MC4 LINE L1 -1339 6983 6895 * 915 230 102 43 chr15 25595747 25596069 -60099685 - L1ME3A LINE L1 -215 5955 5615 532 308 90 30 chr15 25596071 25596333 -60099421 + LTR33 LTR ERVL 2 254 -269 581 263 161 27 chr15 25596816 25597040 -60098714 + MIR SINE MIR 9 262 0 216 0 0 0 chr15 25597105 25597129 -60098625 + (TA)n Simple_repeat Simple_repeat 2 25 0 377 282 19 0 chr15 25598553 25598656 -60097098 + MIR SINE MIR 49 153 -109 213 191 29 59 chr15 25599359 25599427 -60096327 + MIR SINE MIR 197 262 0 222 288 15 0 chr15 25600310 25600376 -60095378 - MIR SINE MIR -111 151 85 5410 15 2 0 chr15 25600788 25601414 -60094340 + L1PA3 LINE L1 5534 6160 0 184 262 226 12 chr15 25601497 25601581 -60094173 - MIR SINE MIR -70 138 37 1859 167 0 10 chr15 25602242 25602553 -60093201 - AluJo SINE Alu -4 308 1 243 236 89 96 chr15 25603089 25603246 -60092508 + MLT1J2 LTR MaLR 1 156 -294 248 231 45 104 chr15 25603346 25603480 -60092274 + MLT1J2 LTR MaLR 281 406 -44 451 345 29 0 chr15 25603505 25603676 -60092078 + MIR SINE MIR 46 221 -41 215 261 15 46 chr15 25603801 25603866 -60091888 + L2 LINE L2 3200 3262 -10 2266 67 3 7 chr15 25604678 25604963 -60090791 + AluY SINE Alu 11 294 -17 1807 152 38 7 chr15 25604990 25605279 -60090475 + AluJo SINE Alu 1 298 -14 322 214 245 0 chr15 25605649 25605747 -60090007 - MER96B DNA MER1_type? 0 417 296 232 121 0 0 chr15 25605773 25605806 -60089948 + MER58A DNA MER1_type 45 77 -30 385 235 189 15 chr15 25605806 25605938 -60089816 + MER5A DNA MER1_type 35 189 0 760 236 11 17 chr15 25607058 25607236 -60088518 - MER5B DNA MER1_type -1 177 1 26 0 0 0 chr15 25607266 25607292 -60088462 + AT_rich Low_complexity Low_complexity 1 26 0 225 254 17 0 chr15 25607311 25607370 -60088384 - MLT1J2 LTR MaLR -21 429 370 485 308 36 10 chr15 25607373 25607568 -60088186 - MLT1J2 LTR MaLR -250 200 1 2183 112 3 0 chr15 25607657 25607953 -60087801 + AluSp SINE Alu 1 297 -16 187 175 35 0 chr15 25607997 25608054 -60087700 + (TA)n Simple_repeat Simple_repeat 2 60 0 2524 65 0 0 chr15 25608091 25608398 -60087356 + AluY SINE Alu 1 307 -4 1461 159 59 4 chr15 25608420 25608659 -60087095 - AluJo SINE Alu -47 265 14 374 297 62 8 chr15 25609291 25609419 -60086335 - L2 LINE L2 0 3272 3138 187 300 22 44 chr15 25609640 25609730 -60086024 + MIR SINE MIR 24 111 -97 293 297 133 8 chr15 25609877 25610005 -60085749 - MIR SINE MIR -95 167 24 2120 148 0 0 chr15 25611207 25611510 -60084244 - AluSx SINE Alu -9 303 1 213 338 42 0 chr15 25612871 25612942 -60082812 - L3 LINE CR1 -18 1559 1486 397 319 96 46 chr15 25613032 25613292 -60082462 - L3 LINE CR1 -85 1492 1220 1050 145 22 6 chr15 25615501 25615680 -60080074 + MER5A DNA MER1_type 8 189 0 2434 74 0 0 chr15 25618497 25618793 -60076961 + AluY SINE Alu 1 296 -15 480 269 76 46 chr15 25620811 25621008 -60074746 - MIR SINE MIR -58 204 2 834 152 11 11 chr15 25621230 25621408 -60074346 + CT-rich Low_complexity Low_complexity 1 178 0 24 0 0 0 chr15 25621507 25621531 -60074223 + AT_rich Low_complexity Low_complexity 1 24 0 304 197 83 38 chr15 25621708 25621840 -60073914 + LTR33 LTR ERVL 1 138 -383 231 121 0 0 chr15 25621836 25621869 -60073885 + LTR33 LTR ERVL 487 519 -2 * 739 256 52 52 chr15 25621919 25622208 -60073546 + L3 LINE CR1 1287 1575 -2 407 371 36 6 chr15 25623794 25623961 -60071793 + MIR3 SINE MIR 35 206 -2 234 0 0 0 chr15 25624075 25624101 -60071653 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1654 133 115 11 chr15 25626559 25626838 -60068916 + AluSg1 SINE Alu 1 308 -1 210 91 0 0 chr15 25628249 25628282 -60067472 + (TCTCC)n Simple_repeat Simple_repeat 4 36 0 24 77 0 0 chr15 25631115 25631167 -60064587 + AT_rich Low_complexity Low_complexity 1 52 0 455 200 0 9 chr15 25632421 25632536 -60063218 + CT-rich Low_complexity Low_complexity 2 115 0 299 219 210 67 chr15 25633454 25633573 -60062181 - MER5B DNA MER1_type -42 136 1 1085 191 31 36 chr15 25633810 25634035 -60061719 - MER58A DNA MER1_type 0 224 1 377 302 38 9 chr15 25634048 25634154 -60061600 + MER5B DNA MER1_type 6 114 -64 2191 113 7 10 chr15 25634974 25635284 -60060470 - AluSx SINE Alu -3 309 1 278 236 16 50 chr15 25635367 25635549 -60060205 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 2137 118 3 3 chr15 25635551 25635840 -60059914 - AluSx SINE Alu -23 289 1 184 292 0 0 chr15 25636234 25636282 -60059472 + L2 LINE L2 3210 3257 -15 337 236 0 0 chr15 25637064 25637136 -60058618 - MER94 DNA DNA -1 133 62 850 147 102 34 chr15 25637765 25637942 -60057812 - MER5A DNA MER1_type 0 189 1 200 247 0 12 chr15 25638106 25638187 -60057567 + GA-rich Low_complexity Low_complexity 4 83 0 1949 166 3 0 chr15 25638680 25638982 -60056772 - AluSx SINE Alu -9 303 1 801 166 0 0 chr15 25639552 25639697 -60056057 + (TG)n Simple_repeat Simple_repeat 2 146 0 497 264 23 0 chr15 25640589 25640718 -60055036 + L2 LINE L2 3180 3311 -2 244 286 149 3 chr15 25644596 25644701 -60051053 - MIR SINE MIR -68 140 60 535 271 0 0 chr15 25646502 25646631 -60049123 - MER94 DNA DNA -2 132 4 196 326 141 22 chr15 25647503 25647595 -60048159 + L3b LINE CR1 1457 1559 -24 1541 172 8 8 chr15 25647674 25647941 -60047813 + AluJo SINE Alu 37 303 -9 356 256 47 0 chr15 25648995 25649081 -60046673 - L1MC4 LINE L1 -1339 6703 6614 356 233 47 0 chr15 25649009 25649095 -60046659 + L1MC4 LINE L1 6614 6703 -1339 38 39 0 0 chr15 25649665 25649717 -60046037 + AT_rich Low_complexity Low_complexity 1 52 0 2011 131 14 46 chr15 25650073 25650423 -60045331 + MER44D DNA MER2_type 1 609 0 1133 118 22 1 chr15 25656672 25656860 -60038894 + L1MC1 LINE L1 5668 5825 -341 2127 127 8 8 chr15 25656862 25657173 -60038581 + AluSq SINE Alu 1 310 -3 310 202 0 0 chr15 25657173 25657240 -60038514 + A-rich Low_complexity Low_complexity 1 67 -113 2844 125 16 25 chr15 25657240 25657727 -60038027 + L1MC1 LINE L1 5851 6333 0 310 202 0 0 chr15 25657727 25657743 -60038011 + A-rich Low_complexity Low_complexity 66 180 0 514 273 160 0 chr15 25657992 25658142 -60037612 - MER5A DNA MER1_type -7 182 9 199 0 31 31 chr15 25658330 25658362 -60037392 + (CAA)n Simple_repeat Simple_repeat 2 33 0 327 104 0 0 chr15 25660723 25660771 -60034983 + (TG)n Simple_repeat Simple_repeat 2 49 0 213 424 8 0 chr15 25661202 25661327 -60034427 + L2 LINE L2 3142 3267 -5 192 179 0 0 chr15 25661538 25661577 -60034177 + (TAG)n Simple_repeat Simple_repeat 2 40 0 494 301 15 40 chr15 25661587 25661789 -60033965 - MIR SINE MIR -23 239 44 21 0 0 0 chr15 25662562 25662583 -60033171 + AT_rich Low_complexity Low_complexity 1 21 0 709 207 28 0 chr15 25662852 25662997 -60032757 + MIR3 SINE MIR 37 185 -23 240 167 0 0 chr15 25664741 25664789 -60030965 + CT-rich Low_complexity Low_complexity 1 48 0 240 196 36 36 chr15 25664820 25664876 -60030878 + L3 LINE CR1 1520 1575 -2 275 198 148 12 chr15 25665254 25665335 -60030419 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 25665430 25665481 -60030273 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1248 225 79 0 chr15 25665565 25665881 -60029873 - MER58B DNA MER1_type 0 341 1 255 195 134 12 chr15 25667237 25667319 -60028435 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 25667414 25667465 -60028289 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1222 228 79 0 chr15 25667549 25667865 -60027889 - MER58B DNA MER1_type 0 341 1 2053 140 0 19 chr15 25670102 25670416 -60025338 + AluSx SINE Alu 1 308 -4 189 328 16 0 chr15 25672193 25672254 -60023500 - MIR SINE MIR -154 108 47 213 381 143 7 chr15 25672309 25672456 -60023298 + L2 LINE L2 3106 3272 0 2542 54 0 0 chr15 25673937 25674231 -60021523 + AluY SINE Alu 1 294 -17 318 54 81 0 chr15 25674231 25674305 -60021449 + (TA)n Simple_repeat Simple_repeat 1 80 0 222 91 0 0 chr15 25677602 25677635 -60018119 + (ATG)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr15 25677763 25677787 -60017967 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr15 25677981 25678021 -60017733 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr15 25679052 25679083 -60016671 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 25679659 25679680 -60016074 + AT_rich Low_complexity Low_complexity 1 21 0 934 121 8 0 chr15 25679680 25679812 -60015942 - AluSp SINE Alu -180 133 1 192 77 0 0 chr15 25681904 25681930 -60013824 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4006 240 26 14 chr15 25685211 25686327 -60009427 + L1MEc LINE L1 29 1157 -5239 22 35 0 0 chr15 25687009 25687038 -60008716 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr15 25687074 25687140 -60008614 + AT_rich Low_complexity Low_complexity 1 66 0 2328 95 7 0 chr15 25687264 25687559 -60008195 - AluSx SINE Alu -15 297 1 895 238 11 11 chr15 25687772 25687961 -60007793 - MER5A DNA MER1_type 0 189 1 337 286 224 16 chr15 25688025 25688217 -60007537 - MIR SINE MIR -23 239 8 1121 195 167 29 chr15 25688414 25688762 -60006992 + MSTD LTR MaLR 1 396 0 311 296 128 24 chr15 25688857 25688982 -60006772 - L2 LINE L2 -4 3309 3172 253 80 20 20 chr15 25689874 25689893 -60005861 + (TTAAA)n Simple_repeat Simple_repeat 5 23 -31 180 0 0 0 chr15 25689893 25689913 -60005841 + (CATAC)n Simple_repeat Simple_repeat 5 24 0 253 80 20 20 chr15 25689913 25689943 -60005811 + (TTAAA)n Simple_repeat Simple_repeat 22 54 0 851 247 37 29 chr15 25690415 25690658 -60005096 + LTR16A1 LTR ERVL 213 457 0 2188 119 0 10 chr15 25690954 25691264 -60004490 - AluSx SINE Alu -5 307 1 308 222 22 44 chr15 25691347 25691527 -60004227 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1768 149 7 50 chr15 25691529 25691831 -60003923 - AluSx SINE Alu -23 289 1 287 292 143 39 chr15 25693205 25693359 -60002395 + MIR3 SINE MIR 15 184 -24 209 200 0 0 chr15 25693816 25693851 -60001903 + T-rich Low_complexity Low_complexity 2 36 0 2250 93 0 7 chr15 25694076 25694377 -60001377 - AluY SINE Alu -12 299 1 30 0 0 0 chr15 25699262 25699292 -59996462 + AT_rich Low_complexity Low_complexity 1 30 0 567 257 49 56 chr15 25703879 25704183 -59991571 + MSTD LTR MaLR 8 309 -87 1194 226 16 28 chr15 25704518 25704841 -59990913 + MSTD LTR MaLR 78 396 0 185 333 83 12 chr15 25704969 25705053 -59990701 + MIR SINE MIR 39 128 -134 1958 145 27 3 chr15 25705320 25705489 -59990265 - AluSx SINE Alu -9 303 123 204 40 0 0 chr15 25705489 25705514 -59990240 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1958 145 27 3 chr15 25705514 25705640 -59990114 - AluSx SINE Alu -189 123 1 213 263 118 0 chr15 25705966 25706042 -59989712 - MIR3 SINE MIR -5 203 119 21 36 0 0 chr15 25706062 25706090 -59989664 + AT_rich Low_complexity Low_complexity 1 28 0 2483 72 3 0 chr15 25706314 25706621 -59989133 + AluSg SINE Alu 3 310 0 217 300 220 0 chr15 25708099 25708199 -59987555 + L2 LINE L2 3149 3270 -2 2081 148 0 13 chr15 25709854 25710164 -59985590 + AluSx SINE Alu 1 306 -6 279 158 73 0 chr15 25713724 25713889 -59981865 + (TA)n Simple_repeat Simple_repeat 2 178 0 261 56 0 0 chr15 25716582 25716618 -59979136 - L1P4 LINE L1 -381 5782 5747 437 226 188 8 chr15 25716880 25717013 -59978741 - MER5A DNA MER1_type 0 189 33 184 340 64 51 chr15 25718107 25718263 -59977491 - MIR3 SINE MIR -39 169 12 1933 186 54 50 chr15 25718717 25719213 -59976541 + MLT1D LTR MaLR 6 503 -2 21 0 0 0 chr15 25719995 25720016 -59975738 + AT_rich Low_complexity Low_complexity 1 21 0 1172 284 99 65 chr15 25720468 25721224 -59974530 - L2 LINE L2 -508 2806 2025 243 314 41 50 chr15 25722059 25722180 -59973574 + L2 LINE L2 3143 3262 -10 384 113 0 0 chr15 25723032 25723094 -59972660 - L1MA8 LINE L1 -6 6285 6224 311 177 0 0 chr15 25723751 25723813 -59971941 - L1MA8 LINE L1 -4 6287 6226 2626 97 10 162 chr15 25725977 25726604 -59969150 + MER1A DNA MER1_type 1 533 0 24 32 0 0 chr15 25726789 25726820 -59968934 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 25727613 25727645 -59968109 + AT_rich Low_complexity Low_complexity 1 32 0 2135 110 0 13 chr15 25729211 25729510 -59966244 - AluSx SINE Alu -17 295 1 368 317 113 0 chr15 25729760 25729902 -59965852 - L2 LINE L2 -556 2758 2601 1022 283 46 13 chr15 25730925 25731317 -59964437 + LTR16A LTR ERVL 1 405 -45 209 339 15 0 chr15 25732495 25732560 -59963194 - MIR SINE MIR -22 240 175 380 241 42 78 chr15 25734489 25734655 -59961099 - MIR3 SINE MIR -16 192 33 231 235 0 0 chr15 25736531 25736582 -59959172 + (TA)n Simple_repeat Simple_repeat 2 52 0 384 152 0 0 chr15 25736582 25736648 -59959106 + (TG)n Simple_repeat Simple_repeat 1 66 0 235 316 146 29 chr15 25736705 25736876 -59958878 + MIR3 SINE MIR 10 200 -8 908 280 75 33 chr15 25739073 25739498 -59956256 + L2 LINE L2 2816 3258 -55 198 0 0 0 chr15 25740238 25740260 -59955494 + (CAA)n Simple_repeat Simple_repeat 1 22 0 253 290 48 76 chr15 25742059 25742204 -59953550 + MIR SINE MIR 81 221 -41 286 319 50 0 chr15 25742242 25742361 -59953393 - L2 LINE L2 0 3313 3189 247 329 19 19 chr15 25743058 25743216 -59952538 - MARNA DNA Mariner -236 350 193 423 191 57 50 chr15 25744440 25744581 -59951173 + AluYa5 SINE Alu 2 143 -168 328 351 7 14 chr15 25745462 25745610 -59950144 + MIR SINE MIR 46 192 -70 221 261 15 46 chr15 25745761 25745826 -59949928 + L2 LINE L2 3200 3262 -10 2126 87 14 10 chr15 25746640 25746928 -59948826 + AluY SINE Alu 11 299 -12 243 290 0 0 chr15 25747037 25747099 -59948655 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 25747161 25747194 -59948560 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 25747201 25747229 -59948525 + (TG)n Simple_repeat Simple_repeat 2 29 0 511 83 0 14 chr15 25747956 25748028 -59947726 + Alu SINE Alu 223 293 -17 209 132 26 0 chr15 25749155 25749193 -59946561 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1151 180 62 5 chr15 25749556 25749767 -59945987 - MER58A DNA MER1_type -1 223 1 21 36 0 0 chr15 25749836 25749864 -59945890 + AT_rich Low_complexity Low_complexity 1 28 0 1553 161 3 63 chr15 25750340 25750657 -59945097 + AluJo SINE Alu 1 298 -14 21 0 0 0 chr15 25750657 25750678 -59945076 + AT_rich Low_complexity Low_complexity 1 21 0 342 196 188 38 chr15 25751484 25751617 -59944137 - FRAM SINE Alu -10 156 4 1591 189 32 26 chr15 25752058 25752397 -59943357 + MER58B DNA MER1_type 1 341 0 692 230 22 28 chr15 25752401 25752579 -59943175 + MER5B DNA MER1_type 2 178 0 1217 195 0 31 chr15 25752758 25753015 -59942739 - AluSx SINE Alu 0 312 64 959 246 65 31 chr15 25755736 25756122 -59939632 - LTR16A LTR ERVL -22 428 30 2205 201 46 28 chr15 25756523 25756964 -59938790 - L1MC/D LINE L1 -480 5762 5330 2347 99 3 0 chr15 25756964 25757266 -59938488 - AluSx SINE Alu -9 303 1 2205 201 46 28 chr15 25757266 25757424 -59938330 - L1MC/D LINE L1 -912 5330 5176 2027 120 17 3 chr15 25757424 25757715 -59938039 - AluSx SINE Alu -17 295 1 2205 201 46 28 chr15 25757715 25757939 -59937815 - L1MC/D LINE L1 -1066 5176 4914 1559 196 38 44 chr15 25757939 25758492 -59937262 - MLT2A2 LTR ERVL 0 554 1 2683 222 36 53 chr15 25758492 25759420 -59936334 - L1MC/D LINE L1 -1228 4918 4007 365 229 0 0 chr15 25759420 25759490 -59936264 - AluJ/FRAM SINE Alu -10 292 223 10873 206 9 15 chr15 25759592 25762824 -59932930 - L1 LINE L1 -1509 4637 1436 22 80 0 0 chr15 25762988 25763038 -59932716 + AT_rich Low_complexity Low_complexity 1 50 0 255 235 0 0 chr15 25763047 25763098 -59932656 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1071 199 21 42 chr15 25763146 25763483 -59932271 - L1MC5 LINE L1 -29 7932 7603 315 0 0 0 chr15 25763799 25763834 -59931920 + (CA)n Simple_repeat Simple_repeat 2 36 0 316 222 0 0 chr15 25766275 25766338 -59929416 + L2 LINE L2 3207 3269 -3 338 350 42 21 chr15 25767060 25767203 -59928551 + MIR SINE MIR 9 154 -108 2707 42 0 0 chr15 25767987 25768297 -59927457 + AluY SINE Alu 1 310 -1 694 205 0 0 chr15 25768665 25768821 -59926933 + L1 LINE L1 3252 3407 -2739 4315 118 12 22 chr15 25768824 25769512 -59926242 + L1MB3 LINE L1 5452 6134 -49 1861 127 51 14 chr15 25769512 25769804 -59925950 + AluSx SINE Alu 1 303 -9 4315 118 12 22 chr15 25769804 25769846 -59925908 + L1MB3 LINE L1 6134 6175 -8 239 281 0 0 chr15 25769876 25769933 -59925821 + MIR SINE MIR 203 259 -3 463 328 11 17 chr15 25770285 25770462 -59925292 + MIR3 SINE MIR 3 178 -30 2480 74 0 0 chr15 25770465 25770775 -59924979 + AluY SINE Alu 2 311 0 758 325 8 12 chr15 25770897 25771140 -59924614 - MIR SINE MIR 0 262 21 268 289 39 72 chr15 25771255 25771435 -59924319 - MIR3 SINE MIR 0 208 35 193 266 31 0 chr15 25771730 25771794 -59923960 + MIR SINE MIR 196 261 -1 2374 43 0 4 chr15 25772751 25773059 -59922695 - AluY SINE Alu 0 307 1 569 269 153 34 chr15 25773798 25774333 -59921421 + L1ME4a LINE L1 5521 6119 -2 797 163 0 8 chr15 25776211 25776340 -59919414 + FLAM_A SINE Alu 1 128 -5 323 214 73 20 chr15 25776655 25776752 -59919002 - MIR SINE MIR -100 108 8 21 0 0 0 chr15 25776978 25776999 -59918755 + AT_rich Low_complexity Low_complexity 1 21 0 189 100 0 0 chr15 25777496 25777512 -59918242 + (CTTA)n Simple_repeat Simple_repeat 2 20 -11 2189 78 0 52 chr15 25777512 25777821 -59917933 - AluY SINE Alu -18 293 1 189 100 0 0 chr15 25777821 25777834 -59917920 + (CTTA)n Simple_repeat Simple_repeat 19 31 0 2063 133 3 0 chr15 25778053 25778354 -59917400 - AluSx SINE Alu -6 306 5 909 205 118 31 chr15 25778933 25779225 -59916529 - MLT1C LTR MaLR -2 465 134 411 211 105 0 chr15 25779332 25779446 -59916308 - MLT1C LTR MaLR -334 133 8 245 231 19 0 chr15 25779917 25779969 -59915785 + L2 LINE L2 3255 3307 -6 416 303 74 6 chr15 25780287 25780449 -59915305 - MIR SINE MIR -70 192 20 650 264 67 67 chr15 25781106 25781279 -59914475 - L2 LINE L2 -2 3311 3136 517 104 26 0 chr15 25781279 25781356 -59914398 - MADE1 DNA Mariner 0 80 2 650 264 67 67 chr15 25781356 25781496 -59914258 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 25781538 25781578 -59914176 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 25783640 25783768 -59911986 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 25783886 25783926 -59911828 - tRNA-Thr-ACT tRNA tRNA -37 40 1 1584 180 7 24 chr15 25785009 25785304 -59910450 + AluJo SINE Alu 1 290 -22 747 159 0 0 chr15 25785391 25785523 -59910231 + CT-rich Low_complexity Low_complexity 1 132 0 2390 98 3 0 chr15 25785523 25785830 -59909924 - AluSx SINE Alu -4 308 1 276 30 0 0 chr15 25786719 25786752 -59909002 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 25786967 25786996 -59908758 + (CA)n Simple_repeat Simple_repeat 2 30 0 1876 167 17 3 chr15 25788644 25789003 -59906751 - MER47A DNA MER2_type 0 366 3 1851 171 3 0 chr15 25789107 25789400 -59906354 + AluJb SINE Alu 1 294 -18 903 240 36 21 chr15 25790196 25790475 -59905279 + L1ME LINE L1 40 322 -6074 2846 156 12 33 chr15 25790598 25791346 -59904408 + L1MB1 LINE L1 5111 5844 -324 871 115 0 7 chr15 25791356 25791495 -59904259 + L1MB1 LINE L1 5998 6135 -33 270 176 0 0 chr15 25791524 25791575 -59904179 + (CATA)n Simple_repeat Simple_repeat 2 52 0 559 256 32 88 chr15 25791630 25791880 -59903874 - MER102b DNA MER1_type -2 339 104 728 225 27 5 chr15 25792228 25792415 -59903339 - L1MC4 LINE L1 -151 7891 7701 1632 153 23 0 chr15 25793143 25793405 -59902349 + AluSg SINE Alu 29 296 -14 198 128 0 0 chr15 25794472 25794511 -59901243 + (A)n Simple_repeat Simple_repeat 1 39 0 358 298 23 8 chr15 25794830 25794961 -59900793 + MIR3 SINE MIR 73 205 -3 854 245 49 21 chr15 25795976 25796430 -59899324 - LTR33 LTR ERVL -22 499 1 2072 233 37 19 chr15 25796939 25797614 -59898140 + L1ME LINE L1 3360 4046 -2169 307 281 10 0 chr15 25797746 25797842 -59897912 + L1ME LINE L1 5579 5675 -515 2007 207 120 10 chr15 25797924 25798517 -59897237 + L1MC4a LINE L1 7150 7807 -1 25 0 0 0 chr15 25798694 25798719 -59897035 + AT_rich Low_complexity Low_complexity 1 25 0 1251 41 7 0 chr15 25801697 25801843 -59893911 + AluY SINE Alu 1 147 -164 231 227 45 45 chr15 25802369 25802435 -59893319 + MIR3 SINE MIR 92 157 -51 21 0 0 0 chr15 25803077 25803098 -59892656 + AT_rich Low_complexity Low_complexity 1 21 0 258 298 9 53 chr15 25803624 25803738 -59892016 - L2 LINE L2 -27 3245 3137 444 258 129 49 chr15 25804740 25804965 -59890789 + MIR SINE MIR 20 262 0 230 307 123 0 chr15 25805085 25805199 -59890555 - MIR3 SINE MIR -41 167 40 2189 108 3 0 chr15 25805502 25805799 -59889955 - AluSp SINE Alu -15 298 1 331 297 108 42 chr15 25807285 25807571 -59888183 + L1M4 LINE L1 5270 5574 -600 238 245 302 0 chr15 25807950 25808056 -59887698 + L2 LINE L2 3172 3309 -4 222 306 0 0 chr15 25808083 25808145 -59887609 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 25808364 25808571 -59887183 + MIR SINE MIR 1 221 -41 345 62 0 0 chr15 25811375 25811423 -59884331 + (CA)n Simple_repeat Simple_repeat 1 48 0 1828 195 100 11 chr15 25811510 25811971 -59883783 - L1MC3 LINE L1 0 7785 7284 252 179 57 66 chr15 25812004 25812110 -59883644 - L1ME4a LINE L1 -32 6089 5985 313 260 71 52 chr15 25812295 25812449 -59883305 - L1ME4a LINE L1 -394 5727 5571 257 266 62 23 chr15 25812637 25812765 -59882989 - L1ME3A LINE L1 0 6170 6038 1247 163 23 42 chr15 25812961 25813267 -59882487 - L1MB8 LINE L1 0 6178 5879 1296 255 73 40 chr15 25813329 25814439 -59881315 - L1ME LINE L1 -4636 1444 323 * 1476 234 127 12 chr15 25814437 25815120 -59880634 - L1MEc LINE L1 -4949 1447 686 231 254 18 0 chr15 25815667 25815722 -59880032 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 25815800 25815869 -59879885 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 25816253 25816422 -59879332 + L1ME3A LINE L1 5572 5747 -423 685 213 165 12 chr15 25816472 25816726 -59879028 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 25816776 25817073 -59878681 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 25817184 25817371 -59878383 + L1M4 LINE L1 4485 4707 -1439 9028 101 52 1 chr15 25817659 25818992 -59876762 + Charlie3 DNA MER1_type 1 1401 -1309 1038 275 69 3 chr15 25819552 25819872 -59875882 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 25820363 25820411 -59875343 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 25821181 25821504 -59874250 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 25822363 25822671 -59873083 + AluJb SINE Alu 1 310 -2 1326 205 74 77 chr15 25822671 25823101 -59872653 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 25823761 25823785 -59871969 + AT_rich Low_complexity Low_complexity 1 24 0 252 280 154 59 chr15 25823935 25824311 -59871443 + L2 LINE L2 2636 3083 -189 2367 119 31 0 chr15 25824334 25824687 -59871067 + THE1B LTR MaLR 1 364 0 797 259 62 16 chr15 25825056 25825522 -59870232 + Charlie7 DNA MER1_type 180 722 -1890 2080 204 37 34 chr15 25825852 25826308 -59869446 - L1M4 LINE L1 -3444 2938 2485 2235 118 3 0 chr15 25826308 25826612 -59869142 + AluSx SINE Alu 2 306 -6 2080 204 37 34 chr15 25826612 25827058 -59868696 - L1M4 LINE L1 -3897 2485 2017 592 188 10 0 chr15 25827072 25827173 -59868581 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6621 141 22 15 chr15 25827179 25828378 -59867376 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 2784 228 49 34 chr15 25828394 25828658 -59867096 - L1M4 LINE L1 -4488 1896 1637 2198 123 0 3 chr15 25828658 25828967 -59866787 + AluSq SINE Alu 1 308 -5 2784 228 49 34 chr15 25828967 25829900 -59865854 - L1M4 LINE L1 -4747 1637 800 2955 131 10 37 chr15 25830417 25831436 -59864318 + L1PB1 LINE L1 4821 5791 -364 252 184 0 0 chr15 25831437 25831486 -59864268 + (CA)n Simple_repeat Simple_repeat 2 50 0 2325 136 3 0 chr15 25831518 25831885 -59863869 + L1PB1 LINE L1 5782 6149 -2 1284 127 11 0 chr15 25831898 25832087 -59863667 + AluSg/x SINE Alu 121 311 -1 274 225 22 34 chr15 25832472 25832561 -59863193 - LTR67 LTR ERVL -14 543 456 251 321 18 9 chr15 25832778 25832887 -59862867 + GA-rich Low_complexity Low_complexity 2 111 0 491 31 15 0 chr15 25834328 25834393 -59861361 + (TG)n Simple_repeat Simple_repeat 2 67 0 1638 164 0 29 chr15 25834431 25834705 -59861049 - AluJo SINE Alu -46 266 1 301 286 36 45 chr15 25834936 25835048 -59860706 - MIR SINE MIR -79 183 73 2484 74 3 0 chr15 25836083 25836393 -59859361 + AluSp SINE Alu 1 311 -2 502 327 98 45 chr15 25837594 25837930 -59857824 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 25838284 25838569 -59857185 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 25838572 25838601 -59857153 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 25838714 25838744 -59857010 + AT_rich Low_complexity Low_complexity 1 30 0 268 352 163 35 chr15 25840110 25840479 -59855275 - L2 LINE L2 -551 2763 2348 365 259 47 53 chr15 25840699 25840869 -59854885 + L1MC4 LINE L1 7873 8041 -1 2202 113 0 28 chr15 25840984 25841334 -59854420 + AluSx SINE Alu 1 312 0 4064 213 35 19 chr15 25841336 25842466 -59853288 + L1P LINE L1 4118 5266 -880 2098 112 24 10 chr15 25843551 25843847 -59851907 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 25845228 25845261 -59850493 + AT_rich Low_complexity Low_complexity 1 33 0 438 246 109 109 chr15 25845755 25846093 -59849661 - MER102b DNA MER1_type -3 338 1 280 259 0 0 chr15 25846348 25846406 -59849348 - MIR SINE MIR -8 254 197 672 291 76 61 chr15 25846413 25847012 -59848742 + L2 LINE L2 2633 3261 -52 470 222 64 35 chr15 25848500 25848671 -59847083 - MER104 DNA MER2_type -4 176 1 976 178 0 25 chr15 25849215 25849412 -59846342 - AluJb SINE Alu -120 192 1 259 203 0 25 chr15 25849473 25849552 -59846202 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2368 72 0 44 chr15 25850265 25850586 -59845168 - AluSx SINE Alu -5 307 1 2296 170 59 43 chr15 25851416 25851909 -59843845 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 25852150 25852419 -59843335 - L2 LINE L2 -38 3275 2986 265 183 95 160 chr15 25852480 25852513 -59843241 + MARNA DNA Mariner 210 244 -342 2247 95 3 3 chr15 25852513 25852809 -59842945 - AluSq SINE Alu -17 296 1 265 183 95 160 chr15 25852809 25852944 -59842810 + MARNA DNA Mariner 244 367 -219 1629 119 123 8 chr15 25853479 25853758 -59841996 - AluSg1 SINE Alu 0 308 1 39 0 0 0 chr15 25853762 25853801 -59841953 + AT_rich Low_complexity Low_complexity 1 39 0 2166 87 11 0 chr15 25853945 25854231 -59841523 - AluY SINE Alu -22 289 1 2158 110 3 20 chr15 25854762 25855063 -59840691 - AluSx SINE Alu -16 296 1 217 293 129 9 chr15 25855107 25855223 -59840531 + MIR3 SINE MIR 40 169 -39 658 191 92 72 chr15 25855468 25855719 -59840035 - MER112 DNA MER1_type 0 256 1 735 170 63 6 chr15 25855986 25856145 -59839609 + L1PA16 LINE L1 5996 6163 -3 1761 115 37 8 chr15 25857148 25857392 -59838362 - AluSq SINE Alu -62 251 1 885 152 0 55 chr15 25857556 25857721 -59838033 - FAM SINE Alu -5 44 1 222 304 0 14 chr15 25857986 25858055 -59837699 - L2 LINE L2 0 3313 3246 333 0 0 0 chr15 25858280 25858317 -59837437 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 305 105 77 chr15 25858610 25858895 -59836859 - L3b LINE CR1 -154 1429 1137 27 0 0 0 chr15 25859765 25859792 -59835962 + AT_rich Low_complexity Low_complexity 1 27 0 235 254 0 0 chr15 25859962 25860017 -59835737 + (TA)n Simple_repeat Simple_repeat 2 56 0 204 196 36 0 chr15 25862360 25862416 -59833338 + T-rich Low_complexity Low_complexity 3 60 0 1328 143 0 17 chr15 25862418 25862648 -59833106 - L1PA15 LINE L1 0 6165 5940 3797 110 9 5 chr15 25862648 25863200 -59832554 - L1PA16 LINE L1 -10 6156 5602 278 206 59 0 chr15 25864728 25864796 -59830958 - MER113 DNA MER1_type? -428 93 22 477 290 35 35 chr15 25865459 25865718 -59830036 - L1ME4a LINE L1 -168 5953 5695 23 0 0 0 chr15 25865814 25865837 -59829917 + AT_rich Low_complexity Low_complexity 1 23 0 412 219 6 134 chr15 25867710 25867874 -59827880 - MER5B DNA MER1_type 0 178 36 279 0 0 0 chr15 25867902 25867933 -59827821 + (TG)n Simple_repeat Simple_repeat 2 32 0 467 273 52 16 chr15 25868580 25868774 -59826980 + L1MC5 LINE L1 7271 7471 -490 299 252 161 7 chr15 25868884 25869024 -59826730 + L1MC4 LINE L1 7624 7896 -146 213 214 43 0 chr15 25869024 25869094 -59826660 + (TA)n Simple_repeat Simple_repeat 2 74 0 249 292 77 0 chr15 25869094 25869224 -59826530 + L1MC4 LINE L1 7902 8041 -1 1317 124 103 4 chr15 25870598 25870840 -59824914 + L1MB3 LINE L1 5918 6183 0 1490 164 65 11 chr15 25870850 25871139 -59824615 + AluJo SINE Alu 6 308 0 767 326 136 23 chr15 25871236 25872059 -59823695 - L2 LINE L2 -1 3312 2377 486 0 0 0 chr15 25872825 25872879 -59822875 + (CA)n Simple_repeat Simple_repeat 1 54 0 269 282 55 27 chr15 25875154 25875264 -59820490 + MIR3 SINE MIR 4 116 -92 262 283 75 19 chr15 25875961 25876067 -59819687 + L2 LINE L2 3178 3289 -24 279 0 0 0 chr15 25876073 25876104 -59819650 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 185 262 115 0 chr15 25876288 25876349 -59819405 + MIR SINE MIR 159 226 -36 4926 94 28 0 chr15 25876623 25877339 -59818415 - L1PA13 LINE L1 0 6163 5428 2042 135 3 0 chr15 25877377 25877673 -59818081 - AluJo SINE Alu -6 306 10 386 264 45 39 chr15 25877674 25877829 -59817925 + MLT1J LTR MaLR 356 511 0 653 277 40 17 chr15 25879050 25879227 -59816527 - MIR SINE MIR -70 192 12 347 342 18 0 chr15 25879257 25879371 -59816383 - MIR SINE MIR -70 138 23 343 210 37 12 chr15 25879898 25879979 -59815775 + MIR SINE MIR 73 155 -107 188 368 36 104 chr15 25880530 25880837 -59814917 + L2 LINE L2 2978 3263 -9 294 356 139 25 chr15 25881768 25881970 -59813784 + MIR SINE MIR 8 232 -30 455 319 98 12 chr15 25882325 25882488 -59813266 - MIR3 SINE MIR -30 178 2 509 213 110 7 chr15 25885410 25885546 -59810208 + MIR SINE MIR 63 212 -50 409 283 0 18 chr15 25885982 25886095 -59809659 + MIR SINE MIR 81 191 -71 263 263 0 0 chr15 25886148 25886205 -59809549 - MIR SINE MIR -69 139 83 21 0 0 0 chr15 25886476 25886497 -59809257 + AT_rich Low_complexity Low_complexity 1 21 0 391 327 83 6 chr15 25887030 25887198 -59808556 - MER5A DNA MER1_type -8 181 1 288 312 52 39 chr15 25887198 25887345 -59808409 + MIR3 SINE MIR 32 180 -28 223 222 0 123 chr15 25888098 25888179 -59807575 + L2 LINE L2 3242 3312 -1 372 260 64 20 chr15 25888258 25888375 -59807379 - L2 LINE L2 -16 3297 3134 25 51 0 0 chr15 25888648 25888687 -59807067 + AT_rich Low_complexity Low_complexity 1 39 0 33 0 0 0 chr15 25889668 25889701 -59806053 + AT_rich Low_complexity Low_complexity 1 33 0 217 336 29 0 chr15 25890065 25890169 -59805585 - MIR SINE MIR -26 236 130 216 318 15 0 chr15 25890282 25890348 -59805406 + L2 LINE L2 3246 3312 -1 465 209 29 29 chr15 25890417 25890556 -59805198 - L1ME4a LINE L1 -4 6117 5979 454 242 0 0 chr15 25891784 25891879 -59803875 - MIR3 SINE MIR -6 202 108 483 247 139 36 chr15 25892035 25892201 -59803553 + MER5A DNA MER1_type 4 186 -3 647 220 187 26 chr15 25892228 25892501 -59803253 + MER5C DNA MER1_type 8 324 0 6811 209 57 9 chr15 25892559 25893109 -59802645 + L1MB7 LINE L1 3620 4142 -2042 959 0 9 0 chr15 25893109 25893220 -59802534 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 6811 209 57 9 chr15 25893220 25895123 -59800631 + L1MB7 LINE L1 4142 6184 0 296 309 95 18 chr15 25895648 25895816 -59799938 - L3 LINE CR1 -10 1567 1387 21 36 0 0 chr15 25898611 25898639 -59797115 + AT_rich Low_complexity Low_complexity 1 28 0 311 327 105 26 chr15 25899220 25899373 -59796381 - L2 LINE L2 -1 3271 3107 348 64 0 0 chr15 25900441 25900488 -59795266 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1341 181 12 0 chr15 25900488 25900731 -59795023 - L1PB4 LINE L1 -19 6137 5892 1662 117 140 0 chr15 25900732 25900924 -59794830 + L1PB4 LINE L1 5560 5724 -432 396 0 0 0 chr15 25900924 25900968 -59794786 + (CA)n Simple_repeat Simple_repeat 2 45 0 1662 117 140 0 chr15 25900968 25901075 -59794679 + L1PB4 LINE L1 5724 5901 -255 251 196 0 18 chr15 25901674 25901730 -59794024 + GA-rich Low_complexity Low_complexity 2 56 0 198 118 0 0 chr15 25901761 25901795 -59793959 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 392 271 44 83 chr15 25901797 25902026 -59793728 - L2 LINE L2 -16 3297 3078 851 72 0 0 chr15 25903802 25903917 -59791837 - L1M4 LINE L1 -496 5659 5563 3540 24 0 0 chr15 25903917 25904331 -59791423 + L1PA2 LINE L1 5742 6155 0 417 248 124 0 chr15 25906428 25906549 -59789205 - L2 LINE L2 0 3313 3178 287 253 168 0 chr15 25907529 25907624 -59788130 - L2 LINE L2 0 3272 3162 320 258 52 21 chr15 25908406 25908503 -59787251 + L2 LINE L2 3137 3236 -36 737 289 11 0 chr15 25909431 25909621 -59786133 - MIR SINE MIR -3 259 68 24 32 0 0 chr15 25911156 25911187 -59784567 + AT_rich Low_complexity Low_complexity 1 31 0 230 211 18 0 chr15 25912263 25912320 -59783434 + MER103 DNA DNA 24 81 -85 1327 154 110 3 chr15 25913412 25913704 -59782050 + MER33 DNA MER1_type 2 324 0 2403 70 3 13 chr15 25914917 25915229 -59780525 - AluY SINE Alu -2 309 1 507 312 47 29 chr15 25916455 25916795 -59778959 + MARNA DNA Mariner 193 538 -48 638 314 53 4 chr15 25917160 25917405 -59778349 + MIR SINE MIR 3 259 -3 186 367 18 46 chr15 25918984 25919093 -59776661 - L2 LINE L2 -35 3237 3132 290 361 19 0 chr15 25920972 25921080 -59774674 + MIR SINE MIR 82 191 -71 1041 298 57 21 chr15 25922572 25922992 -59772762 + LTR16B LTR ERVL 30 464 0 271 330 11 11 chr15 25923097 25923191 -59772563 - MIR3 SINE MIR -7 201 108 797 286 16 33 chr15 25923476 25923721 -59772033 + MIR SINE MIR 19 259 -3 307 309 49 57 chr15 25923827 25924073 -59771681 + L2 LINE L2 2827 3070 -202 2070 111 81 23 chr15 25924119 25924463 -59771291 + THE1B LTR MaLR 1 364 0 341 257 87 22 chr15 25924542 25924725 -59771029 + L1ME4a LINE L1 5725 5919 -202 265 318 110 13 chr15 25925001 25925155 -59770599 - L2 LINE L2 -876 2438 2270 2029 109 34 10 chr15 25925736 25926029 -59769725 + AluSx SINE Alu 1 300 -12 281 146 21 0 chr15 25927314 25927362 -59768392 - L2 LINE L2 0 3272 3224 194 254 36 0 chr15 25929309 25929364 -59766390 - L2 LINE L2 -1 3271 3215 195 42 0 0 chr15 25929858 25929882 -59765872 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 448 86 57 0 chr15 25930254 25930324 -59765430 + LTR2 LTR ERV1 373 446 -3 339 241 128 0 chr15 25930400 25930533 -59765221 + L1MD1 LINE L1 4563 4712 -1434 239 170 0 0 chr15 25930551 25930598 -59765156 + Alu SINE Alu 256 302 0 4687 174 16 43 chr15 25930598 25930908 -59764846 + L1MD1 LINE L1 5022 5339 -903 1881 162 0 7 chr15 25930908 25931198 -59764556 + AluSx SINE Alu 1 288 -24 4687 174 16 43 chr15 25931198 25932091 -59763663 + L1MD1 LINE L1 5339 6192 -50 1580 192 117 17 chr15 25932091 25932451 -59763303 + MSTD LTR MaLR 1 396 0 4687 174 16 43 chr15 25932451 25932496 -59763258 + L1MD1 LINE L1 6192 6237 -5 312 167 0 0 chr15 25932633 25932705 -59763049 + (TA)n Simple_repeat Simple_repeat 2 73 0 1781 155 31 31 chr15 25932705 25933060 -59762694 + MLT1A1 LTR MaLR 4 358 -7 1549 239 21 26 chr15 25934684 25935073 -59760681 - LTR16C LTR ERVL -7 484 98 235 240 173 13 chr15 25935717 25935792 -59759962 - L2 LINE L2 -5 3267 3181 22 0 0 0 chr15 25936010 25936032 -59759722 + AT_rich Low_complexity Low_complexity 1 22 0 235 278 157 26 chr15 25936217 25936332 -59759422 + MIR3 SINE MIR 38 167 -41 2395 98 0 0 chr15 25936574 25936880 -59758874 - AluY SINE Alu -5 306 1 219 234 43 0 chr15 25937581 25937628 -59758126 + MIR3 SINE MIR 139 187 -21 2225 109 0 0 chr15 25938966 25939260 -59756494 + AluSx SINE Alu 1 294 -18 250 222 0 71 chr15 25940864 25940963 -59754791 + HAL1b LINE L1 749 840 -508 21 0 0 0 chr15 25942106 25942127 -59753627 + AT_rich Low_complexity Low_complexity 1 21 0 603 309 14 24 chr15 25942148 25942358 -59753396 - MIR SINE MIR -48 214 7 2357 98 0 0 chr15 25942487 25942793 -59752961 - AluSg SINE Alu -4 306 1 3700 114 2 21 chr15 25943945 25944480 -59751274 + MER1A DNA MER1_type 3 527 0 195 129 0 0 chr15 25944766 25944797 -59750957 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 631 90 10 0 chr15 25945109 25945209 -59750545 + L1PA15 LINE L1 6065 6165 0 346 294 152 66 chr15 25945658 25945855 -59749899 - MIR SINE MIR -1 261 48 286 239 70 0 chr15 25946042 25946113 -59749641 - L2 LINE L2 -9 3304 3229 4912 173 45 15 chr15 25946114 25947027 -59748727 + L1MC3 LINE L1 6701 7650 -135 2503 58 0 32 chr15 25947027 25947340 -59748414 + AluY SINE Alu 1 303 -8 4912 173 45 15 chr15 25947340 25947476 -59748278 + L1MC3 LINE L1 7650 7781 -4 240 289 61 96 chr15 25947536 25947733 -59748021 - L2 LINE L2 -75 3197 3008 453 76 0 0 chr15 25949264 25949330 -59746424 + (CA)n Simple_repeat Simple_repeat 1 66 0 1298 154 9 14 chr15 25951386 25951607 -59744147 + AluJo SINE Alu 85 304 -8 329 266 57 8 chr15 25952218 25952342 -59743412 - MIR SINE MIR -51 211 82 785 209 69 56 chr15 25954065 25954371 -59741383 + L1MC5 LINE L1 7128 7437 -524 290 197 0 61 chr15 25954384 25954450 -59741304 + MER5C DNA MER1_type 15 76 -248 220 209 23 0 chr15 25954574 25954617 -59741137 - MER5C DNA MER1_type -248 76 33 1027 214 48 28 chr15 25954652 25955049 -59740705 + L1MC5 LINE L1 7452 7856 -105 687 112 0 0 chr15 25955991 25956089 -59739665 + AluY SINE Alu 213 310 -1 584 296 37 5 chr15 25957729 25957918 -59737836 - MIR SINE MIR -34 228 34 185 208 0 57 chr15 25959241 25959294 -59736460 + MIR SINE MIR 89 138 -70 360 259 17 17 chr15 25960068 25960184 -59735570 + GA-rich Low_complexity Low_complexity 2 117 0 414 0 0 0 chr15 25960185 25960231 -59735523 + (CA)n Simple_repeat Simple_repeat 1 46 0 293 246 175 47 chr15 25961411 25961622 -59734132 + MLT1G LTR MaLR 37 274 -281 215 308 67 0 chr15 25961763 25961867 -59733887 + MIR SINE MIR 31 141 -67 667 167 42 28 chr15 25962110 25962254 -59733500 + MLT1G LTR MaLR 445 590 0 189 351 117 32 chr15 25962380 25962662 -59733092 + L2 LINE L2 2454 2759 -555 251 323 50 10 chr15 25962760 25962859 -59732895 - MER91C DNA MER1_type -24 116 14 253 236 136 73 chr15 25963019 25963129 -59732625 - L2 LINE L2 -10 3303 3187 1053 203 82 0 chr15 25963152 25963359 -59732395 - MER58A DNA MER1_type 0 224 1 1133 148 0 0 chr15 25963365 25963527 -59732227 - FRAM SINE Alu -14 162 1 429 281 115 26 chr15 25963731 25963923 -59731831 + MIR SINE MIR 2 210 -52 512 303 14 7 chr15 25964548 25964693 -59731061 + MIR SINE MIR 102 247 -15 300 267 164 42 chr15 25967259 25967436 -59728318 + L1MC4a LINE L1 5613 5834 -1974 1906 122 39 3 chr15 25967436 25967722 -59728032 + AluSx SINE Alu 5 300 -12 300 267 164 42 chr15 25967722 25967806 -59727948 + L1MC4a LINE L1 5834 5906 -1902 243 290 0 0 chr15 25967831 25967893 -59727861 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 25967955 25967988 -59727766 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 25967996 25968024 -59727730 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 250 225 0 chr15 25972242 25972322 -59723432 + MIR SINE MIR 87 184 -78 259 320 22 108 chr15 25972633 25972855 -59722899 - L2 LINE L2 -73 3199 2997 415 251 12 135 chr15 25972869 25972936 -59722818 - MER5B DNA MER1_type -1 177 140 1918 152 0 26 chr15 25972936 25973246 -59722508 + AluSx SINE Alu 5 306 -6 415 251 12 135 chr15 25973246 25973341 -59722413 - MER5B DNA MER1_type -38 140 35 225 292 0 42 chr15 25974329 25974401 -59721353 - L2 LINE L2 0 3313 3245 547 100 12 12 chr15 25974434 25974514 -59721240 - MADE1 DNA Mariner 0 80 1 1787 84 0 4 chr15 25974673 25974899 -59720855 - AluY SINE Alu -6 305 81 695 263 86 27 chr15 25975809 25976244 -59719510 + MLT1H LTR MaLR 3 546 -3 222 294 55 40 chr15 25976247 25976378 -59719376 - MIR SINE MIR -63 145 39 286 269 28 28 chr15 25976649 25976757 -59718997 + L2 LINE L2 3201 3308 -5 27 81 0 0 chr15 25977517 25977579 -59718175 + AT_rich Low_complexity Low_complexity 1 62 0 225 231 333 34 chr15 25978201 25978318 -59717436 - MER58 DNA MER1_type 0 2420 2269 * 862 211 27 11 chr15 25978309 25978494 -59717260 - MER58 DNA MER1_type -2232 188 1 204 40 0 0 chr15 25978583 25978608 -59717146 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 285 239 108 31 chr15 25978611 25978741 -59717013 - L2 LINE L2 -217 3055 2916 451 293 33 56 chr15 25979309 25979479 -59716275 + L2 LINE L2 2175 2341 -973 1615 241 90 44 chr15 25979479 25980044 -59715710 + MLT1E LTR MaLR 1 591 -2 451 293 33 56 chr15 25980044 25980088 -59715666 + L2 LINE L2 2341 2384 -930 450 306 30 8 chr15 25980475 25980609 -59715145 + MIR3 SINE MIR 20 156 -52 379 252 52 43 chr15 25980640 25980755 -59714999 - MER5A DNA MER1_type -26 163 48 229 331 66 37 chr15 25980649 25980785 -59714969 + MER5A DNA MER1_type 46 185 -4 * 341 294 33 6 chr15 25983469 25983635 -59712119 + LTR16A1 LTR ERVL 9 176 -274 2541 271 73 21 chr15 25983690 25984768 -59710986 + L1M4 LINE L1 3253 4386 -1760 2260 253 38 78 chr15 25984797 25985623 -59710131 + L1ME LINE L1 32 744 -5336 1820 109 35 0 chr15 25985623 25985880 -59709874 + L1PA16 LINE L1 5900 6165 -1 2260 253 38 78 chr15 25985880 25986589 -59709165 + L1ME LINE L1 744 1480 -4600 1061 216 36 4 chr15 25986613 25986891 -59708863 + L1ME LINE L1 4340 4626 -1454 457 162 0 0 chr15 25986885 25986959 -59708795 - L1M4 LINE L1 -3557 2589 2516 * 1436 166 40 12 chr15 25987399 25987652 -59708102 + AluJo SINE Alu 40 299 -13 666 179 135 13 chr15 25987665 25987862 -59707892 + L1ME LINE L1 5171 5391 -713 254 337 4 20 chr15 25988790 25988912 -59706842 + MIR SINE MIR 59 181 -27 1787 210 72 47 chr15 25989891 25990442 -59705312 - MLT1F1 LTR MaLR 0 567 1 185 264 42 28 chr15 25991145 25991217 -59704537 - MIR3 SINE MIR -3 205 133 324 102 0 0 chr15 25991366 25991415 -59704339 + (CA)n Simple_repeat Simple_repeat 2 50 0 2222 100 0 26 chr15 25991471 25991782 -59703972 + AluSc SINE Alu 1 303 -6 428 256 51 98 chr15 25991932 25992147 -59703607 - L2 LINE L2 -656 2658 2454 305 307 29 0 chr15 25992168 25992308 -59703446 + L1MC5 LINE L1 7758 7901 -60 625 258 201 11 chr15 25992363 25992716 -59703038 + L1ME4a LINE L1 5628 6047 -74 2062 133 3 3 chr15 25993998 25994306 -59701448 - AluSx SINE Alu -4 308 1 320 0 0 24 chr15 25995158 25995218 -59700536 + (TA)n Simple_repeat Simple_repeat 1 98 0 320 0 0 24 chr15 25995218 25995259 -59700495 + (TA)n Simple_repeat Simple_repeat 2 41 0 482 239 34 0 chr15 25996404 25996521 -59699233 + L2 LINE L2 3192 3312 -1 186 350 0 0 chr15 25997307 25997367 -59698387 - L3 LINE CR1 -2 1575 1516 379 239 102 62 chr15 25997605 25997781 -59697973 + MIR3 SINE MIR 19 201 -7 262 288 88 0 chr15 25997775 25997855 -59697899 - MIR SINE MIR -106 102 16 * 558 333 104 40 chr15 25998357 25998828 -59696926 + L2 LINE L2 2813 3313 0 239 263 105 11 chr15 25998824 25998919 -59696835 - MIR3 SINE MIR -102 106 3 * 454 253 82 7 chr15 25999533 25999679 -59696075 + MIR SINE MIR 97 253 -9 436 210 25 0 chr15 25999994 26000075 -59695679 + MER5A DNA MER1_type 30 112 -77 268 242 8 83 chr15 26000126 26000246 -59695508 + MIR SINE MIR 108 218 -44 273 57 0 0 chr15 26001508 26001543 -59694211 + (TG)n Simple_repeat Simple_repeat 2 36 0 424 178 74 52 chr15 26001954 26002089 -59693665 - L1MC4 LINE L1 -1 8041 7904 428 0 19 0 chr15 26002094 26002146 -59693608 + (CA)n Simple_repeat Simple_repeat 1 53 0 414 328 8 8 chr15 26003179 26003304 -59692450 - MIR SINE MIR -112 150 26 22 56 0 0 chr15 26004872 26004908 -59690846 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr15 26005001 26005049 -59690705 + AT_rich Low_complexity Low_complexity 1 48 0 1593 162 50 20 chr15 26005398 26005701 -59690053 - Tigger3b DNA MER2_type 0 1231 920 4183 132 73 38 chr15 26005701 26006490 -59689264 - Tigger3b DNA MER2_type -413 818 2 1461 217 46 16 chr15 26007350 26007931 -59687823 - L1MCa LINE L1 -4066 2360 1707 * 23665 143 24 22 chr15 26007926 26010204 -59685550 + L1MA3 LINE L1 11 2284 -5440 2464 92 0 0 chr15 26010204 26010510 -59685244 - AluSq SINE Alu -7 306 1 23665 143 24 22 chr15 26010510 26012837 -59682917 + L1MA3 LINE L1 2284 4606 -3118 1989 145 3 0 chr15 26012837 26013127 -59682627 + AluSx SINE Alu 1 291 -21 23665 143 24 22 chr15 26013127 26013365 -59682389 + L1MA3 LINE L1 4606 4842 -2882 1500 96 20 5 chr15 26013365 26013557 -59682197 + L1PA10 LINE L1 5963 6164 -4 23665 143 24 22 chr15 26013557 26013758 -59681996 + L1MA3 LINE L1 4842 5041 -2683 321 82 0 0 chr15 26013758 26013807 -59681947 + (GA)n Simple_repeat Simple_repeat 1 49 0 23665 143 24 22 chr15 26013807 26016412 -59679342 + L1MA3 LINE L1 5041 7723 -1 782 167 98 122 chr15 26016426 26016764 -59678990 - L1MCa LINE L1 -4798 1628 1227 185 0 40 0 chr15 26016764 26016789 -59678965 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 782 167 98 122 chr15 26016789 26016916 -59678838 - L1MCa LINE L1 -5199 1227 1099 1718 100 0 0 chr15 26017694 26017914 -59677840 + AluSg/x SINE Alu 73 292 -18 1197 250 14 17 chr15 26018221 26018513 -59677241 + AluJb SINE Alu 1 291 -11 2994 261 130 35 chr15 26018552 26019811 -59675943 + L2 LINE L2 1632 3066 -247 1861 151 164 11 chr15 26019811 26020182 -59675572 + MSTA LTR MaLR 1 428 0 2994 261 130 35 chr15 26020182 26020455 -59675299 + L2 LINE L2 3066 3312 -1 411 298 70 35 chr15 26020727 26020898 -59674856 + MIR SINE MIR 10 186 -76 955 274 102 14 chr15 26021625 26022056 -59673698 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 26022082 26022147 -59673607 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 26022204 26022292 -59673462 + (TA)n Simple_repeat Simple_repeat 2 90 0 214 244 22 0 chr15 26022796 26022841 -59672913 + L3 LINE CR1 1520 1565 -12 386 109 31 0 chr15 26024313 26024377 -59671377 + Alu SINE Alu 230 295 -5 375 181 0 0 chr15 26024980 26025052 -59670702 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 26025135 26025156 -59670598 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 26025525 26025545 -59670209 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr15 26025621 26025642 -59670112 + (T)n Simple_repeat Simple_repeat 1 21 0 780 254 55 95 chr15 26025752 26026098 -59669656 - L1M3d LINE L1 -5557 574 3 235 245 0 0 chr15 26027157 26027210 -59668544 - L2 LINE L2 0 3313 3261 182 277 169 0 chr15 26027871 26027936 -59667818 - MIR SINE MIR -12 250 175 1801 136 7 49 chr15 26027970 26028278 -59667476 + AluSx SINE Alu 1 295 -17 356 317 48 0 chr15 26028278 26028382 -59667372 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 26029599 26029662 -59666092 + AT_rich Low_complexity Low_complexity 1 63 0 412 245 17 27 chr15 26030060 26030233 -59665521 + L1PA8A LINE L1 5676 5848 -283 4832 64 19 6 chr15 26030388 26031016 -59664738 + Charlie3 DNA MER1_type 1487 2122 -588 380 91 0 0 chr15 26031016 26031071 -59664683 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 26031071 26031128 -59664626 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3243 55 2 2 chr15 26031130 26031530 -59664224 - MLT2A1 LTR ERVL -44 400 1 * 3614 77 37 0 chr15 26031530 26032011 -59663743 + Charlie3 DNA MER1_type 2118 2616 -94 428 236 160 0 chr15 26035450 26035594 -59660160 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 26035597 26035646 -59660108 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 26035910 26035932 -59659822 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 26035974 26036014 -59659740 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 462 203 89 141 chr15 26037821 26038059 -59657695 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 26039136 26039166 -59656588 + AT_rich Low_complexity Low_complexity 1 30 0 199 299 119 0 chr15 26039266 26039333 -59656421 + L3 LINE CR1 1492 1566 -11 559 243 72 20 chr15 26039882 26040034 -59655720 + MIR SINE MIR 68 227 -35 2210 89 7 0 chr15 26040599 26040881 -59654873 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 26040881 26040923 -59654831 + AT_rich Low_complexity Low_complexity 1 42 0 265 326 0 11 chr15 26041112 26041201 -59654553 + MIR3 SINE MIR 15 102 -106 2187 269 85 40 chr15 26041409 26042411 -59653343 + L2 LINE L2 1966 3029 -284 1460 175 172 21 chr15 26042411 26042783 -59652971 + MSTA LTR MaLR 1 428 0 2187 269 85 40 chr15 26042783 26042817 -59652937 + L2 LINE L2 3029 3060 -253 418 292 77 30 chr15 26043123 26043291 -59652463 + MIR SINE MIR 10 185 -77 195 333 51 0 chr15 26043978 26044056 -59651698 - L2 LINE L2 -57 3215 3134 272 243 97 0 chr15 26044229 26044332 -59651422 + MER112 DNA MER1_type 147 259 -1 264 128 0 0 chr15 26044548 26044587 -59651167 + MLT1J LTR MaLR 97 135 -376 2287 125 11 13 chr15 26044806 26045182 -59650572 + THE1C LTR MaLR 1 375 0 812 312 60 40 chr15 26045314 26045715 -59650039 - LTR16A1 LTR ERVL 0 457 49 271 325 30 43 chr15 26046775 26046859 -59648895 + L1 LINE L1 3722 3806 -2340 2389 94 0 0 chr15 26046859 26047158 -59648596 - AluSg SINE Alu -11 299 1 271 325 30 43 chr15 26047158 26047304 -59648450 + L1 LINE L1 3806 3949 -2197 2236 102 3 0 chr15 26047352 26047647 -59648107 + AluSp SINE Alu 2 297 -16 201 74 0 0 chr15 26047722 26047749 -59648005 + (A)n Simple_repeat Simple_repeat 1 27 0 1666 172 35 7 chr15 26047751 26048036 -59647718 + AluJb SINE Alu 1 293 -19 395 287 63 92 chr15 26048224 26048500 -59647254 + L1 LINE L1 4051 4333 -1813 2067 141 0 0 chr15 26048500 26048805 -59646949 - AluSx SINE Alu -7 305 1 395 287 63 92 chr15 26048805 26049035 -59646719 + L1 LINE L1 4333 4568 -1578 2184 126 0 3 chr15 26049806 26050115 -59645639 + AluSg SINE Alu 1 308 -2 203 200 25 0 chr15 26050416 26050456 -59645298 + MIR SINE MIR 192 232 -30 196 216 0 0 chr15 26051639 26051676 -59644078 - MIR SINE MIR -10 252 216 424 277 0 48 chr15 26051835 26052060 -59643694 + A-rich Low_complexity Low_complexity 1 214 0 1184 276 117 74 chr15 26052066 26052148 -59643606 + L1MEd LINE L1 4 81 -6159 201 39 0 0 chr15 26052148 26052174 -59643580 + (TA)n Simple_repeat Simple_repeat 2 27 0 1184 276 117 74 chr15 26052174 26052571 -59643183 + L1MEd LINE L1 81 459 -5781 360 0 0 0 chr15 26052571 26052611 -59643143 + (CA)n Simple_repeat Simple_repeat 1 40 0 1184 276 117 74 chr15 26052611 26052778 -59642976 + L1MEd LINE L1 459 617 -5623 1576 95 0 0 chr15 26052778 26052999 -59642755 + L1PA13 LINE L1 5942 6162 -1 1184 276 117 74 chr15 26052999 26053632 -59642122 + L1MEd LINE L1 617 1378 -4862 337 275 70 37 chr15 26053664 26053908 -59641846 + L1M2 LINE L1 2310 2561 -4288 12662 166 35 46 chr15 26053965 26056941 -59638813 - L1MA6 LINE L1 0 6300 3385 1756 171 0 27 chr15 26056941 26057240 -59638514 - AluJo SINE Alu -21 291 1 12662 166 35 46 chr15 26057240 26058062 -59637692 - L1MA6 LINE L1 -2915 3385 2555 578 256 145 12 chr15 26058129 26058528 -59637226 + L1M2 LINE L1 2962 3413 -3435 359 307 67 13 chr15 26058677 26058827 -59636927 - L3 LINE CR1 -7 1570 1413 1257 237 54 128 chr15 26059271 26059330 -59636424 - HAL1 LINE L1 -111 2396 2334 1858 42 15 42 chr15 26059330 26059592 -59636162 - L1PA13 LINE L1 0 6163 5909 1257 237 54 128 chr15 26059592 26059618 -59636136 - HAL1 LINE L1 -173 2334 2308 1894 156 3 0 chr15 26059618 26059919 -59635835 - AluJb SINE Alu -10 302 1 1257 237 54 128 chr15 26059919 26060658 -59635096 - HAL1 LINE L1 -199 2308 1657 1944 135 4 7 chr15 26060658 26060939 -59634815 - AluJb SINE Alu -30 282 3 1257 237 54 128 chr15 26060939 26061126 -59634628 - HAL1 LINE L1 -850 1657 1458 521 149 0 0 chr15 26061251 26061338 -59634416 + AluJ/FRAM SINE Alu 216 302 -10 24 0 0 0 chr15 26061338 26061362 -59634392 + AT_rich Low_complexity Low_complexity 1 24 0 256 247 108 0 chr15 26061409 26061502 -59634252 + L1ME4a LINE L1 5968 6070 -51 1911 172 0 0 chr15 26061697 26062000 -59633754 - AluJb SINE Alu -9 303 1 363 291 45 77 chr15 26062000 26062220 -59633534 - L1MC4 LINE L1 -3 8039 7827 365 233 12 0 chr15 26062326 26062412 -59633342 - L1ME2 LINE L1 -30 6134 6048 315 230 124 58 chr15 26062413 26062639 -59633115 - L1ME LINE L1 -4385 1876 1636 3317 267 46 36 chr15 26062680 26062921 -59632833 - L1ME LINE L1 -4670 1410 1173 2421 91 0 0 chr15 26062921 26063229 -59632525 + AluY SINE Alu 3 310 -1 3317 267 46 36 chr15 26063229 26064387 -59631367 - L1ME LINE L1 -4907 1173 7 297 317 61 0 chr15 26064848 26064930 -59630824 + MIR3 SINE MIR 83 169 -39 2472 74 0 0 chr15 26064933 26065230 -59630524 - AluSg SINE Alu -13 297 1 228 267 0 40 chr15 26066358 26066433 -59629321 + MER5C DNA MER1_type 253 324 0 702 274 42 37 chr15 26066464 26066705 -59629049 - LTR33 LTR ERVL -264 257 16 189 0 0 0 chr15 26066784 26066805 -59628949 + (TTA)n Simple_repeat Simple_repeat 1 21 0 539 283 7 7 chr15 26067056 26067201 -59628553 + MLT2F LTR ERVL 3 147 -516 * 633 225 17 28 chr15 26067197 26067375 -59628379 + MLT1E3 LTR MaLR 46 221 -403 467 292 53 67 chr15 26067218 26067574 -59628180 + MLT2C1 LTR ERVL 45 395 -2 * 3453 144 50 3 chr15 26070338 26070940 -59624814 - LTR34 LTR ERV1 0 699 70 273 263 0 0 chr15 26070933 26070990 -59624764 - MLT1L LTR MaLR -231 384 328 * 464 279 130 35 chr15 26071072 26071326 -59624428 - MLT1L LTR MaLR -337 278 1 274 325 50 8 chr15 26071748 26071868 -59623886 + MIR SINE MIR 125 249 -13 678 180 53 0 chr15 26072926 26073076 -59622678 + L1MC3 LINE L1 7620 7777 -8 498 315 64 15 chr15 26074086 26074289 -59621465 + MIR SINE MIR 47 259 -3 2377 96 3 0 chr15 26074754 26075066 -59620688 - AluSq SINE Alu 0 313 1 383 176 45 182 chr15 26076109 26076158 -59619596 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 26076158 26076459 -59619295 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 26076459 26076739 -59619015 + L1MC4 LINE L1 7753 7983 -59 361 242 131 81 chr15 26077300 26077498 -59618256 + L1MEd LINE L1 943 1150 -4969 775 285 69 14 chr15 26077522 26077813 -59617941 + L2 LINE L2 3003 3309 -4 383 176 45 182 chr15 26077904 26077953 -59617801 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 26077953 26078254 -59617500 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 26078254 26078534 -59617220 + L1MC4 LINE L1 7753 7983 -59 259 269 164 8 chr15 26078735 26078869 -59616885 + L1M4b LINE L1 91 245 -6614 444 272 120 76 chr15 26079062 26079419 -59616335 + L1M4b LINE L1 828 1200 -5655 560 262 90 9 chr15 26079457 26079729 -59616025 + L1M4b LINE L1 1180 1477 -5382 1357 142 85 4 chr15 26079739 26079999 -59615755 + L1MB1 LINE L1 5888 6168 0 6153 86 9 15 chr15 26080111 26081385 -59614369 + L1PA8A LINE L1 4867 6129 -2 249 206 32 0 chr15 26081430 26081493 -59614261 - L1M4b LINE L1 -5303 1556 1492 1381 171 121 8 chr15 26081530 26081787 -59613967 + AluJo SINE Alu 1 286 -26 1108 148 43 10 chr15 26081841 26082050 -59613704 + L1MA4 LINE L1 6079 6294 -6 4678 255 65 28 chr15 26082050 26084152 -59611602 + L1M4b LINE L1 1758 3953 -3004 2255 99 3 13 chr15 26084152 26084465 -59611289 + AluSx SINE Alu 1 310 -2 4678 255 65 28 chr15 26084465 26085159 -59610595 + L1M4b LINE L1 3953 4620 -2337 33 43 0 0 chr15 26088552 26088599 -59607155 + AT_rich Low_complexity Low_complexity 1 47 0 336 330 118 38 chr15 26089272 26089663 -59606091 - L1M4 LINE L1 -3594 2552 2131 1059 80 7 0 chr15 26089811 26089949 -59605805 - AluJb SINE Alu -1 311 173 1179 150 0 0 chr15 26090327 26090500 -59605254 - FRAM SINE Alu -3 173 1 2186 102 7 0 chr15 26092787 26093081 -59602673 + AluSx SINE Alu 1 296 -16 355 237 131 81 chr15 26093743 26093941 -59601813 + L1MEd LINE L1 943 1150 -4969 23 0 0 0 chr15 26094911 26094934 -59600820 + AT_rich Low_complexity Low_complexity 1 23 0 2324 99 0 0 chr15 26095686 26095979 -59599775 + AluSx SINE Alu 1 293 -19 523 281 111 0 chr15 26096590 26096914 -59598840 + L1ME4a LINE L1 5710 6069 -52 198 0 0 0 chr15 26097558 26097580 -59598174 + (TG)n Simple_repeat Simple_repeat 1 22 0 440 206 81 38 chr15 26097580 26097740 -59598014 - LTR7 LTR ERV1 -46 404 238 239 371 65 8 chr15 26097861 26097985 -59597769 + MIR SINE MIR 25 155 -107 25 0 0 0 chr15 26098434 26098459 -59597295 + AT_rich Low_complexity Low_complexity 1 25 0 243 340 136 48 chr15 26098756 26099050 -59596704 - L2 LINE L2 -5 3267 2948 613 315 45 38 chr15 26099078 26099345 -59596409 - L2 LINE L2 -447 2867 2599 384 324 79 86 chr15 26099426 26099880 -59595874 - L2 LINE L2 -1 3271 2821 414 265 39 0 chr15 26100229 26100331 -59595423 + L2 LINE L2 3203 3308 -5 261 297 0 0 chr15 26100860 26100935 -59594819 + MIR SINE MIR 44 118 -90 3098 220 64 69 chr15 26100965 26101278 -59594476 + L1MC4 LINE L1 6749 7062 -980 237 108 0 0 chr15 26101278 26101315 -59594439 + (TAGG)n Simple_repeat Simple_repeat 3 39 0 3098 220 64 69 chr15 26101315 26102302 -59593452 + L1MC4 LINE L1 7062 8042 0 210 284 0 15 chr15 26102316 26102383 -59593371 + MIR SINE MIR 184 249 -13 27 49 0 0 chr15 26102407 26102448 -59593306 + AT_rich Low_complexity Low_complexity 1 41 0 565 249 41 32 chr15 26102681 26102902 -59592852 + L1ME3A LINE L1 5727 5949 -221 866 123 10 123 chr15 26105237 26105432 -59590322 - AluSg/x SINE Alu -6 306 134 240 196 0 36 chr15 26106757 26106813 -59588941 + MIR3 SINE MIR 142 195 -13 1162 55 0 0 chr15 26107609 26107754 -59588000 - L1PA8 LINE L1 -7 6165 6021 243 277 0 0 chr15 26108838 26108903 -59586851 + (TA)n Simple_repeat Simple_repeat 2 66 0 486 283 83 46 chr15 26109304 26109544 -59586210 + MIR SINE MIR 7 255 -7 283 297 59 20 chr15 26109567 26109668 -59586086 + MIR3 SINE MIR 88 192 -16 948 164 41 0 chr15 26110114 26110285 -59585469 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 26110490 26110541 -59585213 + MER5A DNA MER1_type 10 58 -131 2272 106 0 3 chr15 26110541 26110843 -59584911 + AluSx SINE Alu 1 301 -11 587 225 87 64 chr15 26110843 26110964 -59584790 + MER5A DNA MER1_type 58 186 -3 21 36 0 0 chr15 26112978 26113006 -59582748 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 26113027 26113242 -59582512 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 26113223 26113345 -59582409 + Charlie1 DNA MER1_type 2622 2761 0 * 946 164 41 0 chr15 26165342 26165513 -59530241 + MER5B DNA MER1_type 1 178 0 596 225 87 64 chr15 26165718 26165769 -59529985 + MER5A DNA MER1_type 10 58 -131 2304 105 0 3 chr15 26165769 26166073 -59529681 + AluSx SINE Alu 1 303 -9 596 225 87 64 chr15 26166073 26166194 -59529560 + MER5A DNA MER1_type 58 186 -3 255 266 35 53 chr15 26166914 26167083 -59528671 - L1M4 LINE L1 -1472 4674 4509 263 303 0 81 chr15 26167144 26167243 -59528511 + L3b LINE CR1 1244 1334 -249 261 214 57 0 chr15 26167324 26167394 -59528360 - MIR SINE MIR -34 228 155 21 36 0 0 chr15 26168727 26168755 -59526999 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 26168776 26168991 -59526763 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 26168972 26169094 -59526660 + Charlie1 DNA MER1_type 2622 2761 0 * 2424 80 3 0 chr15 26170727 26171026 -59524728 + AluSx SINE Alu 1 300 -12 273 281 0 34 chr15 26172526 26172615 -59523139 + L1MD2 LINE L1 5997 6082 -277 247 91 45 0 chr15 26172697 26172741 -59523013 - L1PA7 LINE L1 -1 6153 6108 2640 35 3 6 chr15 26172975 26173287 -59522467 - AluY SINE Alu 0 311 1 25 0 0 0 chr15 26176263 26176288 -59519466 + AT_rich Low_complexity Low_complexity 1 25 0 562 297 66 8 chr15 26176465 26176724 -59519030 - L1MD3 LINE L1 -14 7981 7708 401 182 0 0 chr15 26176960 26177026 -59518728 + AluJ/FLAM SINE Alu 8 73 -229 2101 168 3 3 chr15 26178418 26178782 -59516972 - MER47A DNA MER2_type 0 366 3 1757 177 3 3 chr15 26178886 26179180 -59516574 + AluJb SINE Alu 1 294 -18 1291 253 22 25 chr15 26179970 26180334 -59515420 + L1MEc LINE L1 35 397 -5999 2051 244 124 13 chr15 26180373 26181210 -59514544 + L1MEc LINE L1 518 1447 -4949 641 266 78 64 chr15 26181208 26181835 -59513919 + L1MEc LINE L1 458 1093 -5112 * 31 0 0 0 chr15 26182144 26182175 -59513579 + AT_rich Low_complexity Low_complexity 1 31 0 310 235 205 42 chr15 26182228 26182385 -59513369 + L1MEc LINE L1 1527 1714 -4682 1266 163 23 42 chr15 26182385 26182691 -59513063 + L1MB8 LINE L1 5879 6178 0 353 260 71 52 chr15 26183203 26183357 -59512397 + L1ME4a LINE L1 5571 5727 -394 280 179 57 66 chr15 26183542 26183648 -59512106 + L1ME4a LINE L1 5985 6089 -32 1961 195 100 11 chr15 26183681 26184142 -59511612 + L1MC3 LINE L1 7284 7785 0 345 62 0 0 chr15 26184229 26184277 -59511477 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 71 0 0 chr15 26184445 26184487 -59511267 + AT_rich Low_complexity Low_complexity 1 42 0 2350 88 3 0 chr15 26185430 26185727 -59510027 + AluSp SINE Alu 1 298 -15 237 287 115 25 chr15 26186030 26186152 -59509602 + MIR3 SINE MIR 40 172 -36 449 258 129 49 chr15 26186264 26186489 -59509265 - MIR SINE MIR 0 262 20 249 298 9 53 chr15 26187491 26187605 -59508149 + L2 LINE L2 3137 3245 -27 21 0 0 0 chr15 26188131 26188152 -59507602 + AT_rich Low_complexity Low_complexity 1 21 0 231 227 45 45 chr15 26188794 26188860 -59506894 - MIR3 SINE MIR -51 157 92 955 274 102 14 chr15 26189931 26190362 -59505392 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 26190388 26190453 -59505301 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 26190510 26190598 -59505156 + (TA)n Simple_repeat Simple_repeat 2 90 0 375 181 0 0 chr15 26191424 26191496 -59504258 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 26191579 26191600 -59504154 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 26191969 26191989 -59503765 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2080 137 3 13 chr15 26192065 26192372 -59503382 - AluJb SINE Alu -8 304 1 259 203 0 25 chr15 26192433 26192512 -59503242 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2400 75 0 34 chr15 26193225 26193546 -59502208 - AluSx SINE Alu -2 310 1 2297 170 59 43 chr15 26194381 26194874 -59500880 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 26195115 26195384 -59500370 - L2 LINE L2 -38 3275 2986 306 187 94 158 chr15 26195445 26195478 -59500276 + MARNA DNA Mariner 210 244 -342 2234 95 3 3 chr15 26195478 26195774 -59499980 - AluSq SINE Alu -17 296 1 306 187 94 158 chr15 26195774 26195911 -59499843 + MARNA DNA Mariner 244 369 -217 1617 119 123 8 chr15 26196444 26196723 -59499031 - AluSg1 SINE Alu 0 308 1 41 0 0 0 chr15 26196725 26196766 -59498988 + AT_rich Low_complexity Low_complexity 1 41 0 2163 87 11 0 chr15 26196910 26197196 -59498558 - AluY SINE Alu -22 289 1 2143 107 3 20 chr15 26197727 26198026 -59497728 - AluSx SINE Alu -16 296 3 217 293 129 9 chr15 26198072 26198188 -59497566 + MIR3 SINE MIR 40 169 -39 678 191 92 72 chr15 26198433 26198684 -59497070 - MER112 DNA MER1_type 0 256 1 743 170 63 6 chr15 26198951 26199110 -59496644 + L1PA16 LINE L1 5996 6163 -3 22 80 0 0 chr15 26200385 26200435 -59495319 + AT_rich Low_complexity Low_complexity 1 50 0 274 235 0 0 chr15 26200444 26200495 -59495259 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1148 204 21 41 chr15 26200543 26200882 -59494872 - L1MC5 LINE L1 -29 7932 7601 315 0 0 0 chr15 26201196 26201231 -59494523 + (CA)n Simple_repeat Simple_repeat 2 36 0 2093 108 24 10 chr15 26206656 26206952 -59488802 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 26208333 26208366 -59487388 + AT_rich Low_complexity Low_complexity 1 33 0 285 189 103 178 chr15 26208860 26209045 -59486709 - MER102a DNA MER1_type -3 327 157 189 236 18 36 chr15 26209435 26209490 -59486264 - MIR SINE MIR -12 250 197 334 303 76 21 chr15 26209498 26209643 -59486111 + L2 LINE L2 2635 2787 -527 643 284 53 66 chr15 26209779 26210216 -59485538 + L2 LINE L2 2831 3261 -52 489 222 64 35 chr15 26211439 26211610 -59484144 - MER104 DNA MER2_type -4 176 1 1359 13 0 0 chr15 26212107 26212259 -59483495 + AluYb8 SINE Alu 155 306 -12 331 297 108 42 chr15 26213139 26213425 -59482329 + L1M4 LINE L1 5270 5574 -600 240 245 302 0 chr15 26213832 26213938 -59481816 + L2 LINE L2 3172 3309 -4 225 306 0 0 chr15 26213965 26214027 -59481727 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 26214245 26214452 -59481302 + MIR SINE MIR 1 221 -41 212 194 0 0 chr15 26217218 26217254 -59478500 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 585 277 25 35 chr15 26217566 26217768 -59477986 - MIR SINE MIR -49 213 14 416 303 74 6 chr15 26218677 26218839 -59476915 + MIR SINE MIR 20 192 -70 245 231 19 0 chr15 26219157 26219209 -59476545 - L2 LINE L2 -6 3307 3255 411 211 105 0 chr15 26219680 26219794 -59475960 + MLT1C LTR MaLR 8 133 -334 909 205 118 31 chr15 26219901 26220193 -59475561 + MLT1C LTR MaLR 134 465 -2 2063 133 3 0 chr15 26220772 26221073 -59474681 + AluSx SINE Alu 5 306 -6 189 100 0 0 chr15 26221292 26221305 -59474449 + (TAAG)n Simple_repeat Simple_repeat 2 14 -17 2153 84 0 52 chr15 26221305 26221614 -59474140 + AluY SINE Alu 1 293 -18 189 100 0 0 chr15 26221614 26221630 -59474124 + (TAAG)n Simple_repeat Simple_repeat 13 31 0 21 0 0 0 chr15 26222376 26222397 -59473357 + AT_rich Low_complexity Low_complexity 1 21 0 399 220 106 23 chr15 26222482 26222614 -59473140 - LTR16A1 LTR ERVL -49 408 266 1189 153 70 8 chr15 26223115 26223357 -59472397 - L1MD1 LINE L1 -7 6471 6215 976 181 0 6 chr15 26223357 26223528 -59472226 - MLT1A1 LTR MaLR -2 363 194 311 73 0 0 chr15 26223628 26223669 -59472085 - MLT1A1 LTR MaLR -324 41 1 2886 167 41 28 chr15 26223672 26223733 -59472021 - L1MD1 LINE L1 -271 6207 6148 195 42 0 0 chr15 26223733 26223757 -59471997 + (TA)n Simple_repeat Simple_repeat 1 24 0 2886 167 41 28 chr15 26223757 26224342 -59471412 - L1MD1 LINE L1 -330 6148 5549 1889 152 7 3 chr15 26224342 26224644 -59471110 - AluSx SINE Alu -9 303 1 2886 167 41 28 chr15 26224644 26224685 -59471069 - L1MD1 LINE L1 -929 5549 5510 331 278 139 0 chr15 26224796 26224940 -59470814 - AluSc SINE Alu -8 291 128 396 221 160 0 chr15 26225057 26225188 -59470566 - L1MD1 LINE L1 -1081 5301 5150 1943 166 39 35 chr15 26225188 26225737 -59470017 - MLT2A2 LTR ERVL 0 554 1 4631 228 43 38 chr15 26225737 26226665 -59469089 - L1MD1 LINE L1 -1228 5154 4213 1599 204 3 10 chr15 26226665 26226959 -59468795 - AluJb SINE Alu -20 292 1 4631 228 43 38 chr15 26226959 26227650 -59468104 - L1MD1 LINE L1 -2169 4213 3527 854 245 49 21 chr15 26228159 26228613 -59467141 + LTR33 LTR ERVL 1 499 -22 358 298 23 8 chr15 26229628 26229759 -59465995 - MIR3 SINE MIR -3 205 73 198 128 0 0 chr15 26230078 26230117 -59465637 + (T)n Simple_repeat Simple_repeat 1 39 0 1632 153 23 0 chr15 26231184 26231446 -59464308 - AluSg SINE Alu -14 296 29 317 215 32 11 chr15 26232174 26232267 -59463487 + L1MC4 LINE L1 7701 7795 -247 1422 162 13 0 chr15 26232369 26232598 -59463156 + AluSg/x SINE Alu 75 306 -6 1385 209 51 18 chr15 26232598 26233047 -59462707 - L1MD1 LINE L1 -3904 2480 2017 592 188 10 0 chr15 26233061 26233162 -59462592 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6793 134 23 13 chr15 26233168 26234364 -59461390 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 561 163 0 0 chr15 26234566 26234664 -59461090 + AluSp/q SINE Alu 211 308 -5 2250 221 49 31 chr15 26234664 26235597 -59460157 - L1MD1 LINE L1 -4516 1787 800 691 271 45 90 chr15 26235969 26236390 -59459364 - L1M3d LINE L1 -5487 644 3 236 245 0 0 chr15 26237449 26237502 -59458252 - L2 LINE L2 0 3313 3261 1813 136 7 49 chr15 26238262 26238570 -59457184 + AluSx SINE Alu 1 295 -17 354 317 48 0 chr15 26238570 26238674 -59457080 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 26239891 26239954 -59455800 + AT_rich Low_complexity Low_complexity 1 63 0 381 241 13 26 chr15 26240353 26240499 -59455255 + L1ME LINE L1 5678 5824 -297 1107 209 5 0 chr15 26240576 26240782 -59454972 + MER82 DNA MER2_type 447 653 0 235 260 83 39 chr15 26241067 26241248 -59454506 + L1 LINE L1 4800 4988 -1158 625 313 58 7 chr15 26241314 26241589 -59454165 + L1 LINE L1 3080 3368 -2778 1038 275 69 3 chr15 26242206 26242526 -59453228 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 26243017 26243065 -59452689 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 26243835 26244158 -59451596 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 26245017 26245325 -59450429 + AluJb SINE Alu 1 310 -2 1353 205 72 74 chr15 26245325 26245755 -59449999 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 26246415 26246439 -59449315 + AT_rich Low_complexity Low_complexity 1 24 0 238 282 164 58 chr15 26246603 26246966 -59448788 + L2 LINE L2 2646 3083 -189 2383 116 31 0 chr15 26246989 26247342 -59448412 + THE1B LTR MaLR 1 364 0 797 262 64 14 chr15 26247711 26248165 -59447589 + Charlie7 DNA MER1_type 180 711 -1901 872 220 0 0 chr15 26248353 26248512 -59447242 - FRAM SINE Alu -7 159 1 693 292 46 5 chr15 26248540 26248735 -59447019 + MIR SINE MIR 47 249 -13 437 312 118 76 chr15 26248774 26249104 -59446650 + L2 LINE L2 2928 3271 -1 2484 74 3 0 chr15 26250070 26250380 -59445374 + AluSp SINE Alu 1 311 -2 489 331 98 42 chr15 26251581 26251916 -59443838 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 26252270 26252555 -59443199 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 26252558 26252587 -59443167 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 26252701 26252731 -59443023 + AT_rich Low_complexity Low_complexity 1 30 0 248 355 163 35 chr15 26254097 26254466 -59441288 - L2 LINE L2 -551 2763 2348 5722 153 26 14 chr15 26254621 26256480 -59439274 + L1PA16 LINE L1 4279 6156 -10 1322 143 0 17 chr15 26256480 26256709 -59439045 + L1PA15 LINE L1 5940 6165 0 5722 153 26 14 chr15 26256709 26256721 -59439033 + L1PA16 LINE L1 6156 6166 0 240 305 105 77 chr15 26259405 26259690 -59436064 + L3b LINE CR1 1137 1429 -154 333 0 0 0 chr15 26259983 26260020 -59435734 + (TG)n Simple_repeat Simple_repeat 1 37 0 222 304 0 14 chr15 26260245 26260314 -59435440 + L2 LINE L2 3246 3313 0 326 242 73 20 chr15 26260668 26260765 -59434989 + MIR SINE MIR 8 108 -100 797 163 0 8 chr15 26261080 26261209 -59434545 - FLAM_A SINE Alu -5 128 1 569 269 153 34 chr15 26262862 26263397 -59432357 - L1ME4a LINE L1 -2 6119 5521 608 290 21 21 chr15 26263577 26263770 -59431984 + MIR SINE MIR 70 262 0 224 282 47 47 chr15 26263866 26263951 -59431803 - MIR SINE MIR 0 262 178 2698 42 0 0 chr15 26264160 26264469 -59431285 - AluY SINE Alu -2 309 1 338 350 42 21 chr15 26265253 26265396 -59430358 - MIR SINE MIR -108 154 9 667 268 63 66 chr15 26266381 26266557 -59429197 - L2 LINE L2 0 3313 3137 517 104 26 0 chr15 26266557 26266634 -59429120 - MADE1 DNA Mariner 0 80 2 667 268 63 66 chr15 26266634 26266774 -59428980 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 26266816 26266856 -59428898 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 26268918 26269046 -59426708 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 26269164 26269204 -59426550 - tRNA-Thr-ACT tRNA tRNA -37 40 1 511 83 0 14 chr15 26270018 26270090 -59425664 + Alu SINE Alu 224 294 -17 231 254 18 0 chr15 26271596 26271651 -59424103 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 26271729 26271798 -59423956 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 26272182 26272351 -59423403 + L1ME3A LINE L1 5572 5747 -423 700 209 165 12 chr15 26272401 26272655 -59423099 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 26272705 26273002 -59422752 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 26273113 26273300 -59422454 + L1M4 LINE L1 4485 4707 -1439 14314 91 39 3 chr15 26273588 26275637 -59420117 + Charlie3 DNA MER1_type 1 2122 -588 364 91 0 0 chr15 26275637 26275692 -59420062 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 26275692 26275749 -59420005 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3087 55 2 2 chr15 26275751 26276151 -59419603 - MLT2A1 LTR ERVL -44 400 1 * 3437 75 42 2 chr15 26276151 26276631 -59419123 + Charlie3 DNA MER1_type 2118 2616 -94 425 236 160 0 chr15 26280070 26280214 -59415540 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 26280217 26280266 -59415488 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 26280530 26280552 -59415202 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 26280594 26280634 -59415120 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 461 203 89 141 chr15 26282444 26282682 -59413072 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 26283868 26283898 -59411856 + AT_rich Low_complexity Low_complexity 1 30 0 198 299 119 0 chr15 26283999 26284066 -59411688 + L3 LINE CR1 1492 1566 -11 556 243 72 20 chr15 26284615 26284767 -59410987 + MIR SINE MIR 68 227 -35 2213 89 7 0 chr15 26285332 26285614 -59410140 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 26285614 26285656 -59410098 + AT_rich Low_complexity Low_complexity 1 42 0 273 326 36 69 chr15 26285845 26286106 -59409648 + MIR3 SINE MIR 15 262 0 665 215 60 7 chr15 26286635 26286784 -59408970 + MIR SINE MIR 2 158 -104 1637 214 25 23 chr15 26286795 26287276 -59408478 + L1 LINE L1 2926 3407 -2739 4331 116 12 22 chr15 26287279 26287967 -59407787 + L1MB3 LINE L1 5452 6134 -49 1861 127 51 14 chr15 26287967 26288259 -59407495 + AluSx SINE Alu 1 303 -9 4331 116 12 22 chr15 26288259 26288301 -59407453 + L1MB3 LINE L1 6134 6175 -8 239 281 0 0 chr15 26288331 26288388 -59407366 + MIR SINE MIR 203 259 -3 463 328 11 17 chr15 26288739 26288916 -59406838 + MIR3 SINE MIR 3 178 -30 2480 74 0 0 chr15 26288919 26289229 -59406525 + AluY SINE Alu 2 311 0 721 326 12 12 chr15 26289351 26289593 -59406161 - MIR SINE MIR 0 262 21 268 289 39 72 chr15 26289708 26289888 -59405866 - MIR3 SINE MIR 0 208 35 202 266 31 0 chr15 26290183 26290247 -59405507 + MIR SINE MIR 196 261 -1 21 36 0 0 chr15 26291092 26291120 -59404634 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr15 26291193 26291222 -59404532 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2365 49 0 3 chr15 26291226 26291511 -59404243 - AluY SINE Alu -27 284 1 1416 82 0 5 chr15 26292054 26292238 -59403516 + AluSq SINE Alu 119 301 -12 209 132 26 0 chr15 26292299 26292337 -59403417 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1151 180 62 5 chr15 26292700 26292911 -59402843 - MER58A DNA MER1_type -1 223 1 328 251 137 76 chr15 26292963 26293174 -59402580 + L1ME LINE L1 5383 5606 -515 713 122 211 0 chr15 26293191 26293314 -59402440 + FRAM SINE Alu 4 152 -24 21 0 0 0 chr15 26294123 26294144 -59401610 + AT_rich Low_complexity Low_complexity 1 21 0 1553 161 3 63 chr15 26294144 26294461 -59401293 - AluJo SINE Alu -14 298 1 495 351 52 0 chr15 26294468 26294679 -59401075 - MIR SINE MIR -13 249 28 1598 176 7 24 chr15 26295157 26295452 -59400302 + AluJo SINE Alu 1 290 -22 369 197 0 0 chr15 26295537 26295613 -59400141 + CT-rich Low_complexity Low_complexity 1 76 0 249 172 69 0 chr15 26295756 26295814 -59399940 - L1 LINE L1 -1960 4186 4125 2295 119 0 0 chr15 26295822 26296172 -59399582 - AluSx SINE Alu 0 350 1 276 30 0 0 chr15 26297064 26297097 -59398657 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 26297312 26297341 -59398413 + (CA)n Simple_repeat Simple_repeat 2 30 0 2050 132 4 0 chr15 26298740 26299055 -59396699 + AluSx SINE Alu 1 316 0 552 272 80 6 chr15 26299338 26299500 -59396254 - MER5A DNA MER1_type -1 188 15 2223 122 3 0 chr15 26299781 26300092 -59395662 + AluSx SINE Alu 1 312 0 692 230 22 28 chr15 26300271 26300449 -59395305 - MER5B DNA MER1_type 0 178 2 1479 204 35 27 chr15 26300453 26300791 -59394963 - MER58B DNA MER1_type 0 341 1 413 276 55 16 chr15 26301268 26301395 -59394359 + MIR SINE MIR 29 160 -102 1997 155 0 3 chr15 26301474 26301777 -59393977 + AluJb SINE Alu 1 302 -10 980 249 65 29 chr15 26302067 26302452 -59393302 + LTR16A LTR ERVL 30 428 -22 600 139 228 89 chr15 26303198 26303302 -59392452 + MER5A DNA MER1_type 9 97 -92 189 0 0 0 chr15 26303302 26303323 -59392431 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 943 181 0 12 chr15 26303324 26303484 -59392270 - FAM SINE Alu -17 158 1 600 139 228 89 chr15 26303484 26303535 -59392219 + MER5A DNA MER1_type 96 188 -1 376 305 7 64 chr15 26303778 26303919 -59391835 + MIR SINE MIR 51 183 -79 221 351 0 0 chr15 26304481 26304538 -59391216 + C-rich Low_complexity Low_complexity 1 57 0 193 231 0 26 chr15 26304681 26304720 -59391034 + L2 LINE L2 134 171 -3143 251 321 18 9 chr15 26305973 26306082 -59389672 + CT-rich Low_complexity Low_complexity 2 111 0 274 225 22 34 chr15 26306299 26306388 -59389366 + LTR67 LTR ERVL 456 543 -14 1284 127 11 0 chr15 26306773 26306962 -59388792 - AluSg/x SINE Alu -1 311 121 2325 136 3 0 chr15 26306975 26307342 -59388412 - L1PB1 LINE L1 -2 6149 5782 252 184 0 0 chr15 26307374 26307423 -59388331 + (TG)n Simple_repeat Simple_repeat 2 50 0 14202 188 33 14 chr15 26307424 26313581 -59382173 - L1P1 LINE L1 -364 6507 114 947 127 0 0 chr15 26313585 26313719 -59382035 - AluJb SINE Alu -177 135 2 350 284 86 0 chr15 26313847 26313963 -59381791 + MIR SINE MIR 26 151 -57 1346 127 68 24 chr15 26314308 26314560 -59381194 - L1MB3 LINE L1 -17 6166 5904 743 171 30 6 chr15 26314562 26314726 -59381028 - L1MB3 LINE L1 -779 5367 5200 237 226 0 19 chr15 26314756 26314809 -59380945 - L2 LINE L2 -5 3267 3216 405 0 0 0 chr15 26315833 26315878 -59379876 + (CA)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr15 26316803 26316852 -59378902 + (TG)n Simple_repeat Simple_repeat 2 50 0 1699 194 41 0 chr15 26318855 26319148 -59376606 - AluJb SINE Alu -7 305 1 545 242 8 0 chr15 26319217 26319337 -59376417 + L2 LINE L2 2949 3069 -244 2508 55 0 23 chr15 26319571 26319879 -59375875 - AluY SINE Alu -9 302 2 461 103 0 15 chr15 26320066 26320134 -59375620 - AluJ/FLAM SINE Alu -245 67 1 450 273 97 11 chr15 26320179 26320355 -59375399 + L1MB3 LINE L1 5540 5730 -391 710 161 8 8 chr15 26320361 26320479 -59375275 + FLAM_C SINE Alu 1 118 -15 431 154 33 0 chr15 26320484 26320575 -59375179 + GA-rich Low_complexity Low_complexity 4 97 0 2461 126 4 67 chr15 26320606 26320891 -59374863 + L1MB3 LINE L1 5734 5979 -204 2206 113 10 3 chr15 26320891 26321192 -59374562 - AluSq SINE Alu -10 303 1 2461 126 4 67 chr15 26321192 26321382 -59374372 + L1MB3 LINE L1 5979 6179 -4 336 200 107 40 chr15 26321481 26321631 -59374123 + L1ME4a LINE L1 5962 6121 0 315 254 44 61 chr15 26321697 26321811 -59373943 + L2 LINE L2 3128 3239 -74 201 146 49 0 chr15 26321852 26321893 -59373861 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1463 214 83 3 chr15 26321914 26322251 -59373503 - MLT1A1 LTR MaLR 0 365 2 388 300 79 37 chr15 26322387 26322577 -59373177 + L3 LINE CR1 1119 1316 -261 262 324 0 0 chr15 26322551 26322619 -59373135 - L2 LINE L2 -4 3268 3201 * 2121 118 23 0 chr15 26322829 26323134 -59372620 + AluSx SINE Alu 1 312 0 1770 174 7 3 chr15 26323195 26323500 -59372254 - AluJo SINE Alu -6 306 1 774 227 89 49 chr15 26324757 26324982 -59370772 + MIR SINE MIR 13 246 -16 375 377 113 21 chr15 26325270 26325737 -59370017 - L2 LINE L2 -585 2729 2220 2318 121 0 0 chr15 26326014 26326319 -59369435 - AluSx SINE Alu -7 305 1 661 311 148 22 chr15 26327040 26327577 -59368177 + L2 LINE L2 2670 3272 0 226 315 32 14 chr15 26328972 26329097 -59366657 - MIR SINE MIR -62 146 40 996 104 0 0 chr15 26330074 26330208 -59365546 + FRAM SINE Alu 28 161 -15 367 301 84 52 chr15 26330428 26330714 -59365040 + L2 LINE L2 1800 2094 -1220 532 212 30 0 chr15 26330751 26330850 -59364904 + MER5B DNA MER1_type 1 102 -76 2380 101 3 0 chr15 26331776 26332083 -59363671 + AluSx SINE Alu 1 308 -4 236 232 8 16 chr15 26332086 26332210 -59363544 + GA-rich Low_complexity Low_complexity 1 123 0 869 240 125 48 chr15 26332535 26333103 -59362651 + L1MC4a LINE L1 5317 5967 -1841 2090 104 7 4 chr15 26333474 26333752 -59362002 + AluSq SINE Alu 1 279 -34 308 210 161 0 chr15 26333992 26334073 -59361681 - MIR SINE MIR -80 182 89 1548 135 93 3 chr15 26335901 26336190 -59359564 - MER46B DNA MER2_type 0 236 47 5424 123 43 8 chr15 26336191 26337147 -59358607 + L1MA5 LINE L1 5312 6300 0 247 103 0 0 chr15 26337171 26337210 -59358544 + Tigger4(Zombi) DNA MER2_type 25 63 -2668 22 35 0 0 chr15 26337740 26337769 -59357985 + AT_rich Low_complexity Low_complexity 1 29 0 4629 159 28 14 chr15 26338123 26339095 -59356659 + L1MB8 LINE L1 5188 6173 -5 209 114 29 0 chr15 26339180 26339215 -59356539 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 351 240 33 120 chr15 26339260 26339443 -59356311 + L2 LINE L2 3060 3226 -46 369 204 272 31 chr15 26339984 26340146 -59355608 + L2 LINE L2 3113 3313 0 1077 96 120 0 chr15 26340552 26340719 -59355035 + MSTA LTR MaLR 242 428 0 755 175 7 7 chr15 26341218 26341355 -59354399 - FLAM_C SINE Alu -6 137 1 297 264 132 11 chr15 26341364 26341455 -59354299 - MIR SINE MIR -67 141 40 601 239 72 19 chr15 26342444 26342792 -59352962 + MLT1I LTR MaLR 1 409 0 882 267 8 8 chr15 26342814 26343072 -59352682 + MIR SINE MIR 3 260 -2 314 330 48 0 chr15 26343505 26343608 -59352146 + L2 LINE L2 3158 3265 -7 307 288 162 18 chr15 26345003 26345114 -59350640 - MIR3 SINE MIR -22 186 60 * 323 360 150 21 chr15 26345057 26345577 -59350177 - L2 LINE L2 -1158 2156 1570 1395 171 8 8 chr15 26345735 26345975 -59349779 - L1PB4 LINE L1 -17 6139 5900 4123 162 14 4 chr15 26347063 26347822 -59347932 - L1MA9 LINE L1 -146 6166 5400 2811 166 28 0 chr15 26348501 26349032 -59346722 + L1MB7 LINE L1 5631 6176 -8 219 200 27 13 chr15 26349589 26349664 -59346090 + CT-rich Low_complexity Low_complexity 3 78 0 29371 95 12 31 chr15 26350984 26353910 -59341844 - L1P3 LINE L1 -664 5805 2965 2208 117 0 0 chr15 26353910 26354201 -59341553 + AluSx SINE Alu 1 291 -21 29371 95 12 31 chr15 26354201 26356409 -59339345 - L1P3 LINE L1 -3504 2965 718 207 374 33 0 chr15 26356638 26356729 -59339025 + MIR3 SINE MIR 111 204 -4 471 240 47 16 chr15 26358932 26359061 -59336693 + MIR SINE MIR 104 236 -26 23 33 0 0 chr15 26359534 26359564 -59336190 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr15 26359723 26359761 -59335993 + AT_rich Low_complexity Low_complexity 1 38 0 192 158 0 0 chr15 26363234 26363272 -59332482 + CT-rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr15 26363787 26363829 -59331925 + (TG)n Simple_repeat Simple_repeat 2 43 0 708 238 26 7 chr15 26363829 26363980 -59331774 - AluJb SINE Alu -28 284 131 213 158 0 0 chr15 26364506 26364544 -59331210 + L2 LINE L2 1351 1388 -1926 247 290 121 54 chr15 26364781 26365076 -59330678 + L2 LINE L2 2748 3063 -209 23 33 0 0 chr15 26365268 26365298 -59330456 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 26366260 26366289 -59329465 + AT_rich Low_complexity Low_complexity 1 29 0 734 64 37 18 chr15 26366295 26366404 -59329350 - HY1 scRNA scRNA -1 111 1 2100 99 35 0 chr15 26367978 26368260 -59327494 + AluSp SINE Alu 1 292 -21 483 181 0 0 chr15 26369105 26369188 -59326566 - AluJ/FLAM SINE Alu -219 93 11 280 305 107 30 chr15 26369245 26369376 -59326378 - L2 LINE L2 -6 3266 3126 722 202 0 23 chr15 26371019 26371148 -59324606 + FLAM_A SINE Alu 1 126 -7 1976 102 8 8 chr15 26371276 26371541 -59324213 + AluSx SINE Alu 1 265 -47 270 0 0 0 chr15 26371551 26371581 -59324173 + (CA)n Simple_repeat Simple_repeat 2 31 0 1873 178 0 9 chr15 26371923 26372238 -59323516 - AluJb SINE Alu 0 312 1 317 268 14 94 chr15 26372258 26372396 -59323358 + L2 LINE L2 3146 3272 0 200 321 186 47 chr15 26373411 26373604 -59322150 + L3 LINE CR1 958 1177 -400 268 341 85 18 chr15 26373646 26373810 -59321944 - MIR SINE MIR -59 203 29 2218 82 4 4 chr15 26374714 26375021 -59320733 - AluSc SINE Alu 0 307 1 257 347 153 40 chr15 26375199 26376057 -59319697 + L2 LINE L2 1521 2475 -839 220 241 25 0 chr15 26376116 26376195 -59319559 + (TA)n Simple_repeat Simple_repeat 1 81 0 276 146 19 39 chr15 26376254 26376357 -59319397 + (TA)n Simple_repeat Simple_repeat 2 102 0 903 226 115 0 chr15 26376432 26376666 -59319088 - MIR SINE MIR 0 262 2 1181 295 111 6 chr15 26377305 26377840 -59317914 - L2 LINE L2 -283 3030 2436 306 180 0 0 chr15 26377851 26377912 -59317842 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr15 26377912 26377933 -59317821 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr15 26378145 26378173 -59317581 + AT_rich Low_complexity Low_complexity 1 28 0 398 326 65 40 chr15 26378502 26378824 -59316930 + L1MC4 LINE L1 7491 7820 -222 2206 93 0 39 chr15 26379696 26380007 -59315747 - AluSq SINE Alu -13 300 2 22 35 0 0 chr15 26380994 26381023 -59314731 + AT_rich Low_complexity Low_complexity 1 29 0 299 183 83 0 chr15 26381037 26381097 -59314657 - L1ME3A LINE L1 -20 6150 6086 1811 159 114 30 chr15 26381194 26381622 -59314132 + L1MD1 LINE L1 5689 6152 -90 1861 133 14 24 chr15 26381637 26381931 -59313823 - AluJo SINE Alu -21 291 1 1735 174 3 3 chr15 26381942 26382229 -59313525 - AluJo SINE Alu -25 287 1 1825 197 22 30 chr15 26382387 26382753 -59313001 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr15 26383404 26383427 -59312327 + AT_rich Low_complexity Low_complexity 1 23 0 532 79 0 0 chr15 26383556 26383619 -59312135 - AluJ/FRAM SINE Alu -29 283 221 2309 81 7 7 chr15 26383721 26384019 -59311735 - AluSq SINE Alu -15 298 1 21 0 0 0 chr15 26384409 26384430 -59311324 + AT_rich Low_complexity Low_complexity 1 21 0 1829 147 27 10 chr15 26384972 26385264 -59310490 - AluJb SINE Alu -15 297 1 605 302 72 41 chr15 26385618 26386078 -59309676 - L1ME LINE L1 -370 5800 5327 237 277 109 7 chr15 26386603 26386740 -59309014 - L1ME LINE L1 -844 5302 5152 2088 142 6 3 chr15 26387148 26387459 -59308295 - AluSx SINE Alu 0 312 1 778 251 140 17 chr15 26389778 26389896 -59305858 + AluSg1 SINE Alu 2 104 -205 210 37 0 0 chr15 26389896 26389923 -59305831 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 778 251 140 17 chr15 26389923 26390039 -59305715 + AluSg1 SINE Alu 104 265 -44 225 0 0 0 chr15 26390049 26390074 -59305680 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1217 441 10 0 chr15 26390639 26390938 -59304816 - AluJo SINE Alu 0 302 1 1962 153 0 0 chr15 26392234 26392528 -59303226 + AluJb SINE Alu 1 294 -18 180 242 85 105 chr15 26392540 26392693 -59303061 + L2 LINE L2 2306 2455 -859 2528 67 0 0 chr15 26392700 26392998 -59302756 + AluY SINE Alu 1 298 -13 349 202 60 6 chr15 26393397 26393565 -59302189 + (TA)n Simple_repeat Simple_repeat 1 177 0 336 156 104 7 chr15 26393579 26393733 -59302021 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 251 92 81 0 chr15 26393741 26393828 -59301926 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 53 40 0 0 chr15 26393828 26393902 -59301852 + AT_rich Low_complexity Low_complexity 1 74 0 266 290 14 0 chr15 26393913 26393982 -59301772 + L2 LINE L2 2992 3061 -211 199 299 80 43 chr15 26394218 26394405 -59301349 - L2 LINE L2 -742 2572 2379 187 325 33 20 chr15 26394498 26394649 -59301105 + L2 LINE L2 1932 2084 -1230 388 348 111 29 chr15 26394990 26395446 -59300308 + L2 LINE L2 2632 3117 -155 293 333 0 10 chr15 26395552 26395648 -59300106 + MIR SINE MIR 16 110 -98 7057 64 32 0 chr15 26396050 26397036 -59298718 + L1PA13 LINE L1 5149 6161 -2 1182 191 9 14 chr15 26397700 26397920 -59297834 - MER20 DNA MER1_type 0 219 1 538 282 55 17 chr15 26397936 26398117 -59297637 - MER5A DNA MER1_type 0 189 2 192 294 0 0 chr15 26398425 26398476 -59297278 - L2 LINE L2 -23 3249 3199 2152 145 0 0 chr15 26400346 26400686 -59295068 - AluSx SINE Alu 0 340 1 536 207 33 8 chr15 26400690 26400811 -59294943 - MIR SINE MIR -63 145 22 2190 193 28 28 chr15 26401083 26401549 -59294205 + MLT1C LTR MaLR 1 466 -1 284 273 113 27 chr15 26401742 26401892 -59293862 + MIR SINE MIR 20 182 -80 208 295 128 13 chr15 26402017 26402095 -59293659 - MIR3 SINE MIR 0 208 122 540 233 29 122 chr15 26402641 26402886 -59292868 + L2 LINE L2 3092 3313 0 305 271 193 14 chr15 26403277 26403417 -59292337 + MIR3 SINE MIR 41 205 -3 218 287 78 26 chr15 26404092 26404207 -59291547 + L2 LINE L2 2239 2359 -955 342 330 90 34 chr15 26407833 26408066 -59287688 - MIR SINE MIR -15 247 2 379 244 0 0 chr15 26408458 26408540 -59287214 + MIR SINE MIR 76 157 -105 * 400 256 276 10 chr15 26408530 26408733 -59287021 - MIR SINE MIR 0 262 6 802 286 9 22 chr15 26409969 26410193 -59285561 - MLT1J LTR MaLR -173 338 118 369 0 0 0 chr15 26410417 26410458 -59285296 + (CA)n Simple_repeat Simple_repeat 2 42 0 448 278 31 102 chr15 26410848 26411125 -59284629 + MLT1L LTR MaLR 89 424 -191 1825 249 137 25 chr15 26411413 26411976 -59283778 + MLT1E2 LTR MaLR 1 626 0 521 240 41 0 chr15 26411976 26412097 -59283657 + MLT1E2-int LTR MaLR 1 126 -1245 3955 172 32 35 chr15 26412100 26413599 -59282155 + L1PB4 LINE L1 4537 6035 -121 687 83 52 0 chr15 26413739 26413835 -59281919 + L1PA16 LINE L1 6061 6161 -5 858 100 62 0 chr15 26415491 26415621 -59280133 + L1PA16 LINE L1 6024 6161 -5 449 141 0 14 chr15 26415624 26415695 -59280059 - LTR37B LTR ERV1 -369 99 30 268 236 167 28 chr15 26417246 26417390 -59278364 - L1MC4a LINE L1 -1875 5933 5770 229 303 45 0 chr15 26417478 26417567 -59278187 + L1MC4 LINE L1 7941 8033 -9 216 0 0 0 chr15 26418918 26419191 -59276563 + (TTTTG)n Simple_repeat Simple_repeat 1 273 0 3156 84 2 43 chr15 26418962 26419167 -59276587 - L1PA15 LINE L1 -3 6162 5950 216 0 0 0 chr15 26419167 26419191 -59276563 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2341 50 0 3 chr15 26419193 26419475 -59276279 - AluY SINE Alu -30 281 1 3156 84 2 43 chr15 26419475 26419731 -59276023 - L1PA15 LINE L1 -216 5949 5717 280 188 0 31 chr15 26419676 26419740 -59276014 - L1MC4a LINE L1 -2039 5769 5708 * 441 283 168 16 chr15 26419735 26419926 -59275828 + MIR SINE MIR 25 244 -18 1889 182 36 36 chr15 26420545 26420935 -59274819 - MLT1B LTR MaLR 0 390 1 443 200 0 56 chr15 26421153 26421278 -59274476 + MIR SINE MIR 55 172 -90 356 267 137 0 chr15 26422105 26422251 -59273503 + MIR SINE MIR 68 233 -29 617 219 126 7 chr15 26422347 26422498 -59273256 - MIR SINE MIR -6 256 88 45 34 0 0 chr15 26422584 26422643 -59273111 + AT_rich Low_complexity Low_complexity 1 59 0 262 259 17 0 chr15 26422696 26422754 -59273000 + L2 LINE L2 3195 3253 -19 * 317 266 286 16 chr15 26422751 26422943 -59272811 - MIR SINE MIR -3 259 16 236 301 110 59 chr15 26423322 26423458 -59272296 + MIR SINE MIR 29 171 -91 591 277 12 24 chr15 26424128 26424294 -59271460 + MIR3 SINE MIR 17 180 -28 519 45 0 0 chr15 26424558 26424624 -59271130 + (TG)n Simple_repeat Simple_repeat 1 66 0 1055 204 28 32 chr15 26425801 26426017 -59269737 - MER20 DNA MER1_type 0 219 5 618 155 138 0 chr15 26427763 26427879 -59267875 - MER58B DNA MER1_type -28 313 182 22 0 0 0 chr15 26428287 26428309 -59267445 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr15 26429121 26429151 -59266603 + (A)n Simple_repeat Simple_repeat 1 30 0 444 277 127 18 chr15 26430332 26430552 -59265202 + L1ME3A LINE L1 5924 6167 -3 1807 142 23 40 chr15 26431362 26431664 -59264090 - AluJb SINE Alu -2 310 14 26 30 0 0 chr15 26431809 26431842 -59263912 + AT_rich Low_complexity Low_complexity 1 33 0 2700 32 0 10 chr15 26432372 26432685 -59263069 - AluY SINE Alu -1 310 1 27 29 0 0 chr15 26432765 26432799 -59262955 + AT_rich Low_complexity Low_complexity 1 34 0 364 248 108 108 chr15 26433998 26434164 -59261590 - L1M4 LINE L1 -3000 3146 2981 207 0 0 0 chr15 26434164 26434187 -59261567 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1814 181 0 13 chr15 26434188 26434491 -59261263 - 7SLRNA srpRNA srpRNA -21 299 1 364 248 108 108 chr15 26434491 26434596 -59261158 - L1M4 LINE L1 -3165 2981 2870 2181 108 14 0 chr15 26434596 26434893 -59260861 + AluSx SINE Alu 1 301 -11 364 248 108 108 chr15 26434893 26434932 -59260822 - L1M4 LINE L1 -3275 2871 2833 22 70 0 0 chr15 26434932 26434975 -59260779 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr15 26435733 26435761 -59259993 + AT_rich Low_complexity Low_complexity 1 28 0 232 146 21 42 chr15 26439104 26439152 -59256602 - MER2 DNA MER2_type -31 314 268 1334 146 5 14 chr15 26439179 26439391 -59256363 - MER2 DNA MER2_type -135 210 1 1144 177 41 70 chr15 26439629 26439872 -59255882 + MER46A DNA MER2_type 1 236 0 32 43 0 0 chr15 26439975 26440021 -59255733 + AT_rich Low_complexity Low_complexity 1 46 0 180 211 231 0 chr15 26440114 26440166 -59255588 + L2 LINE L2 3205 3268 -4 249 340 141 46 chr15 26440683 26441009 -59254745 - L2 LINE L2 -1 3271 2915 482 328 30 30 chr15 26441090 26441322 -59254432 - L2 LINE L2 -1722 1592 1361 296 250 91 0 chr15 26441322 26441410 -59254344 + L1ME2 LINE L1 6059 6154 -10 330 322 0 11 chr15 26441544 26441634 -59254120 + L2 LINE L2 3223 3311 -2 2226 135 41 36 chr15 26442582 26442944 -59252810 - THE1B LTR MaLR 0 364 1 6962 79 5 0 chr15 26442944 26443821 -59251933 - THE1B-int LTR MaLR 0 1580 700 333 297 79 35 chr15 26443896 26444125 -59251629 - L2 LINE L2 -353 2961 2723 1986 163 138 3 chr15 26444260 26444615 -59251139 - MER57A LTR ERV1 0 403 1 728 118 18 0 chr15 26444688 26444798 -59250956 - LTR54B LTR ERV1 -377 121 10 4994 198 38 30 chr15 26444802 26445600 -59250154 - MER57-int LTR ERV1 -389 7148 6358 1703 165 0 63 chr15 26445600 26445916 -59249838 + AluJb SINE Alu 1 296 -16 4994 198 38 30 chr15 26445916 26445956 -59249798 - MER57-int LTR ERV1 -1179 6358 6320 2224 163 0 34 chr15 26445956 26446305 -59249449 + MER1B DNA MER1_type 1 337 0 4994 198 38 30 chr15 26446305 26446563 -59249191 - MER57-int LTR ERV1 -1217 6320 6042 3627 114 4 20 chr15 26446563 26446785 -59248969 - MER1A DNA MER1_type -2174 528 304 1971 144 85 28 chr15 26446785 26447104 -59248650 + MER1B DNA MER1_type 1 337 0 3627 114 4 20 chr15 26447104 26447390 -59248364 - MER1A DNA MER1_type -2398 304 28 936 251 18 0 chr15 26447402 26447625 -59248129 - MER57-int LTR ERV1 -1486 6051 5825 4940 186 36 15 chr15 26447845 26448157 -59247597 - MER57-int LTR ERV1 -1716 5821 5517 342 0 0 0 chr15 26448157 26448195 -59247559 + (CA)n Simple_repeat Simple_repeat 1 38 0 4940 186 36 15 chr15 26448195 26448954 -59246800 - MER57-int LTR ERV1 -2020 5517 2183 389 287 22 44 chr15 26450111 26450247 -59245507 + MIR SINE MIR 20 152 -56 245 279 44 15 chr15 26450313 26450381 -59245373 + MER5B DNA MER1_type 35 104 -74 1143 257 70 54 chr15 26450397 26450777 -59244977 + L2 LINE L2 2683 3066 -247 1362 93 5 39 chr15 26450777 26450981 -59244773 + L1PB3 LINE L1 5957 6153 -1 1143 257 70 54 chr15 26450981 26451221 -59244533 + L2 LINE L2 3066 3301 -12 1590 159 10 57 chr15 26451930 26452244 -59243510 - AluJo SINE Alu -13 299 1 870 125 0 0 chr15 26452402 26452522 -59243232 + AluSq/x SINE Alu 1 120 -192 24 0 0 0 chr15 26452522 26452546 -59243208 + AT_rich Low_complexity Low_complexity 1 24 0 266 272 19 160 chr15 26453988 26454201 -59241553 - MIR SINE MIR -32 230 48 3069 155 51 26 chr15 26454419 26454988 -59240766 - LTR1 LTR ERV1 0 785 203 339 206 0 0 chr15 26454982 26455050 -59240704 - LTR1 LTR ERV1 -533 252 185 * 798 180 17 11 chr15 26455224 26455402 -59240352 - LTR1 LTR ERV1 -606 179 1 257 333 10 0 chr15 26455924 26456020 -59239734 + CT-rich Low_complexity Low_complexity 6 102 0 1231 256 56 117 chr15 26456627 26457579 -59238175 - L2 LINE L2 -161 3152 2257 1669 188 0 13 chr15 26457791 26458094 -59237660 + AluJb SINE Alu 4 302 -10 538 234 16 0 chr15 26459119 26459247 -59236507 + MIR SINE MIR 133 262 0 241 122 0 0 chr15 26459438 26459479 -59236275 - L1MB5 LINE L1 0 6174 6134 1104 89 0 0 chr15 26459479 26459614 -59236140 - AluJb SINE Alu -21 291 157 1674 169 0 0 chr15 26459635 26459914 -59235840 - L1MB5 LINE L1 -30 6144 5866 279 250 0 0 chr15 26460152 26460208 -59235546 - MIR3 SINE MIR -35 173 118 214 382 11 0 chr15 26460310 26460399 -59235355 - L2 LINE L2 -83 3189 3100 32356 116 13 16 chr15 26460404 26465328 -59230426 + L1P LINE L1 11 4919 -1227 425 92 81 3 chr15 26465334 26465416 -59230338 + L1PA7 LINE L1 4143 4228 -1918 7326 65 3 2 chr15 26465425 26465541 -59230213 + L1PA7 LINE L1 4928 5042 -1112 2447 74 3 13 chr15 26465541 26465851 -59229903 + AluY SINE Alu 1 307 -4 7326 65 3 2 chr15 26465851 26466944 -59228810 + L1PA7 LINE L1 5042 6145 -9 218 151 19 75 chr15 26466951 26467057 -59228697 + (TATAA)n Simple_repeat Simple_repeat 3 102 0 1804 189 30 27 chr15 26467147 26467512 -59228242 + MER47A DNA MER2_type 1 366 0 641 210 204 0 chr15 26468668 26468825 -59226929 + MER5A DNA MER1_type 1 189 0 1361 146 142 13 chr15 26468944 26469183 -59226571 - AluSg1 SINE Alu -17 292 23 438 303 0 0 chr15 26469430 26469539 -59226215 + L2 LINE L2 3205 3313 0 416 131 30 50 chr15 26469882 26469981 -59225773 + L1MC5 LINE L1 7756 7852 -109 468 308 55 37 chr15 26470203 26470528 -59225226 + L2 LINE L2 1560 1890 -1424 253 293 54 61 chr15 26470566 26470713 -59225041 + L2 LINE L2 2246 2391 -923 289 143 0 48 chr15 26470766 26470829 -59224925 - L1MA10 LINE L1 0 6334 6275 * 1874 184 18 26 chr15 26470825 26470875 -59224879 - L1ME1 LINE L1 -197 5969 5920 731 306 28 45 chr15 26470875 26471273 -59224481 - L1MA4A LINE L1 -376 5927 5537 612 279 133 29 chr15 26471471 26471787 -59223967 + MER115 DNA AcHobo 58 406 -287 1230 163 0 26 chr15 26471993 26472226 -59223528 - AluJo SINE Alu -14 298 72 303 93 0 0 chr15 26472257 26472300 -59223454 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 185 304 24 65 chr15 26472300 26472324 -59223430 + L2 LINE L2 2458 2481 -833 1370 45 0 11 chr15 26472324 26472503 -59223251 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 185 304 24 65 chr15 26472503 26472646 -59223108 + L2 LINE L2 2481 2618 -696 244 278 351 0 chr15 26472668 26472819 -59222935 + MIR SINE MIR 23 226 -36 5059 130 51 17 chr15 26472900 26473783 -59221971 + Tigger3b DNA MER2_type 319 1231 0 217 348 45 80 chr15 26474322 26474635 -59221119 - L2 LINE L2 -411 2903 2602 381 202 0 24 chr15 26474858 26474942 -59220812 - MIR SINE MIR -1 261 180 842 241 47 30 chr15 26474942 26475178 -59220576 - MLT1G1 LTR MaLR 0 595 356 294 395 57 6 chr15 26475204 26475361 -59220393 + L2 LINE L2 3107 3271 -1 476 326 170 35 chr15 26475397 26475774 -59219980 - L3 LINE CR1 -75 1502 1075 283 281 132 53 chr15 26477193 26477307 -59218447 - L2 LINE L2 0 3272 3150 481 183 43 0 chr15 26477535 26477628 -59218126 + HY1 scRNA scRNA 12 108 -4 188 389 0 0 chr15 26477843 26477897 -59217857 - MIR SINE MIR -68 140 87 209 197 45 0 chr15 26478788 26478854 -59216900 + (TA)n Simple_repeat Simple_repeat 2 70 0 2133 127 7 0 chr15 26479589 26479889 -59215865 - AluSx SINE Alu -5 307 6 2028 107 0 82 chr15 26480445 26480773 -59214981 - AluSx SINE Alu -11 301 1 1693 141 0 44 chr15 26481955 26482253 -59213501 + AluJb SINE Alu 11 295 -17 2254 95 7 3 chr15 26482514 26482809 -59212945 + AluSq SINE Alu 1 296 -17 2069 142 0 0 chr15 26482866 26483169 -59212585 - AluSx SINE Alu -9 303 1 204 339 31 0 chr15 26483278 26483343 -59212411 - L2 LINE L2 -1 3312 3246 432 277 99 28 chr15 26483453 26483666 -59212088 - L3 LINE CR1 -154 1423 1196 257 264 0 0 chr15 26483808 26483861 -59211893 + MIR3 SINE MIR 131 183 -25 374 268 94 5 chr15 26484862 26484981 -59210773 + MIR SINE MIR 20 144 -64 2076 102 67 0 chr15 26485809 26486094 -59209660 - AluSx SINE Alu -8 304 1 710 129 0 16 chr15 26486390 26486514 -59209240 - L1MB8 LINE L1 -6 6172 6051 420 296 70 0 chr15 26487315 26487487 -59208267 + L1ME4a LINE L1 5743 5926 -195 1325 191 53 39 chr15 26487654 26487936 -59207818 + AluJo SINE Alu 1 286 -26 2293 198 41 41 chr15 26487936 26487972 -59207782 - L1MB8 LINE L1 -43 6135 6100 2117 130 0 13 chr15 26487972 26488273 -59207481 - AluSx SINE Alu -15 297 1 2293 198 41 41 chr15 26488273 26488821 -59206933 - L1MB8 LINE L1 -77 6101 5551 363 338 28 0 chr15 26489243 26489385 -59206369 - L2 LINE L2 -4 3309 3164 1572 260 68 9 chr15 26489490 26490181 -59205573 - L2 LINE L2 -4 3309 2579 1543 205 30 67 chr15 26490338 26490743 -59205011 - MLT1B LTR MaLR 0 390 1 184 316 143 10 chr15 26490787 26490885 -59204869 - L2 LINE L2 -626 2688 2578 669 272 71 36 chr15 26491732 26491956 -59203798 + MIR SINE MIR 7 238 -24 2223 97 23 0 chr15 26492602 26492902 -59202852 - AluSp SINE Alu -6 307 1 2488 77 3 0 chr15 26493179 26493489 -59202265 + AluSp SINE Alu 3 313 0 1830 172 0 41 chr15 26494632 26494951 -59200803 + AluJb SINE Alu 3 308 -4 2248 101 6 28 chr15 26495405 26495723 -59200031 + AluSp SINE Alu 1 311 -2 2438 206 34 16 chr15 26495962 26496466 -59199288 - MER82 DNA MER2_type -9 644 132 1843 178 57 44 chr15 26496519 26496973 -59198781 - MLT1C LTR MaLR -2 465 6 1315 288 32 19 chr15 26497016 26497653 -59198101 + L1ME1 LINE L1 946 1630 -4680 445 289 90 38 chr15 26497705 26498079 -59197675 + L1ME1 LINE L1 3048 3491 -2638 486 115 74 7 chr15 26498329 26498477 -59197277 + (TA)n Simple_repeat Simple_repeat 1 158 0 432 299 81 4 chr15 26498519 26498780 -59196974 + L1ME1 LINE L1 3574 3854 -2275 1902 98 0 0 chr15 26499029 26499275 -59196479 + AluY SINE Alu 39 284 -27 530 281 151 41 chr15 26499529 26500682 -59195072 + L1ME1 LINE L1 4549 5835 -314 15202 161 50 47 chr15 26500716 26504891 -59190863 + L1MA4A LINE L1 2 4164 -2841 413 187 0 0 chr15 26504891 26504966 -59190788 - AluJ/FRAM SINE Alu -7 305 231 15202 161 50 47 chr15 26504966 26505137 -59190617 + L1MA4A LINE L1 4164 4333 -2672 2210 126 7 0 chr15 26505137 26505446 -59190308 - AluSx SINE Alu -1 311 1 15202 161 50 47 chr15 26505446 26506218 -59189536 + L1MA4A LINE L1 4333 5101 -1904 279 0 0 0 chr15 26506218 26506249 -59189505 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 15202 161 50 47 chr15 26506249 26508043 -59187711 + L1MA4A LINE L1 5101 6998 -7 2263 83 7 0 chr15 26508065 26508353 -59187401 + AluSx SINE Alu 1 290 -22 199 284 226 0 chr15 26508507 26508609 -59187145 - MIR3 SINE MIR -78 130 6 2241 106 7 0 chr15 26508657 26508950 -59186804 + AluSx SINE Alu 5 299 -13 547 113 0 0 chr15 26509130 26509210 -59186544 + MADE1 DNA Mariner 1 80 0 562 156 0 10 chr15 26509384 26509480 -59186274 + FRAM SINE Alu 62 156 -20 425 28 56 0 chr15 26509498 26509569 -59186185 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 209 0 0 chr15 26510032 26510099 -59185655 + (TA)n Simple_repeat Simple_repeat 1 67 0 1411 143 5 0 chr15 26510103 26510326 -59185428 + AluSq SINE Alu 87 310 -3 414 263 172 5 chr15 26510400 26510586 -59185168 + L2 LINE L2 1857 2073 -1241 521 277 211 28 chr15 26510597 26510990 -59184764 + L2 LINE L2 2386 2850 -464 221 246 116 0 chr15 26511024 26511093 -59184661 + L2 LINE L2 2938 3014 -299 300 301 83 23 chr15 26511136 26511269 -59184485 + L2 LINE L2 3172 3312 -1 1640 155 32 7 chr15 26511437 26511714 -59184040 - AluJb SINE Alu -28 284 1 2270 96 10 6 chr15 26514065 26514377 -59181377 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 26514779 26514800 -59180954 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 26516300 26516328 -59179426 + AT_rich Low_complexity Low_complexity 1 28 0 1012 254 134 40 chr15 26516553 26517029 -59178725 - MARNA DNA Mariner -21 565 45 924 170 7 0 chr15 26518621 26518768 -59176986 + FAM SINE Alu 26 173 -12 26 30 0 0 chr15 26518796 26518829 -59176925 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 26522019 26522041 -59173713 + (A)n Simple_repeat Simple_repeat 1 22 0 2475 63 0 0 chr15 26522436 26522735 -59173019 - AluY SINE Alu -12 299 1 488 169 180 0 chr15 26524197 26524285 -59171469 - MER44D DNA MER2_type -1 604 501 578 192 66 8 chr15 26524285 26524451 -59171303 - MER6 DNA MER2_type -1 864 -64 * 1108 121 103 56 chr15 26524451 26524678 -59171076 - MER44D DNA MER2_type -101 508 1 378 352 76 25 chr15 26524763 26524999 -59170755 - L2 LINE L2 0 3272 3025 799 214 29 0 chr15 26525810 26525983 -59169771 - MER3 DNA MER1_type -78 131 1 1865 141 7 14 chr15 26526154 26526451 -59169303 + AluJb SINE Alu 1 295 -17 21 57 0 0 chr15 26526452 26526487 -59169267 + AT_rich Low_complexity Low_complexity 1 35 0 725 99 0 0 chr15 26527210 26527311 -59168443 - HY3 scRNA scRNA 0 101 1 193 253 195 0 chr15 26527383 26527470 -59168284 - L2 LINE L2 -2 3311 3208 185 250 0 78 chr15 26528509 26528573 -59167181 - L2 LINE L2 -3 3269 3211 2257 82 7 30 chr15 26529438 26529742 -59166012 - AluSp SINE Alu -16 297 1 1902 123 20 27 chr15 26530667 26530967 -59164787 + AluJb SINE Alu 1 298 -14 1765 255 111 10 chr15 26532256 26533060 -59162694 - L2 LINE L2 -5 3308 2427 2047 112 32 0 chr15 26533152 26533437 -59162317 + AluY SINE Alu 1 294 -17 314 313 155 27 chr15 26536056 26536522 -59159232 + L2 LINE L2 2508 3047 -225 207 0 0 0 chr15 26537173 26537196 -59158558 + (A)n Simple_repeat Simple_repeat 1 23 0 180 401 99 40 chr15 26537682 26537742 -59158012 - L2 LINE L2 -90 3182 3127 207 0 0 0 chr15 26537742 26537765 -59157989 + (TATAA)n Simple_repeat Simple_repeat 3 25 0 180 401 99 40 chr15 26537765 26538008 -59157746 - L2 LINE L2 -145 3127 2861 210 338 58 26 chr15 26538620 26538774 -59156980 + L2 LINE L2 2837 2995 -277 244 309 175 0 chr15 26538942 26539039 -59156715 + L2 LINE L2 3154 3267 -5 1503 84 194 4 chr15 26539461 26539743 -59156011 + AluSg SINE Alu 2 328 0 1821 154 26 0 chr15 26540052 26540364 -59155390 + L1PA14 LINE L1 5841 6160 -1 2201 111 7 0 chr15 26540565 26540863 -59154891 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr15 26541252 26541273 -59154481 + AT_rich Low_complexity Low_complexity 1 21 0 2122 123 0 3 chr15 26541986 26542279 -59153475 + AluSx SINE Alu 1 292 -20 720 198 0 0 chr15 26542591 26542712 -59153042 + FLAM_A SINE Alu 1 121 -12 4875 109 88 20 chr15 26542733 26543621 -59152133 + L1MA4A LINE L1 5353 6300 -3 22 0 0 0 chr15 26544895 26544917 -59150837 + GC_rich Low_complexity Low_complexity 1 22 0 310 270 112 51 chr15 26547246 26547424 -59148330 + MIR SINE MIR 23 211 -51 1459 188 59 15 chr15 26548286 26548558 -59147196 - AluJo SINE Alu -26 286 3 269 258 70 62 chr15 26548586 26548714 -59147040 - L1ME LINE L1 -303 5818 5690 2054 93 18 18 chr15 26548745 26549053 -59146701 + AluSx SINE Alu 6 313 0 277 175 62 25 chr15 26549207 26549287 -59146467 - L1MC5 LINE L1 -34 7927 7845 * 369 296 38 0 chr15 26549277 26549409 -59146345 - L1MC4 LINE L1 -113 7929 7793 2077 141 0 3 chr15 26549438 26549737 -59146017 + AluSx SINE Alu 1 298 -14 221 283 19 0 chr15 26549868 26549921 -59145833 - MER5A DNA MER1_type -78 111 58 364 244 74 82 chr15 26549949 26550029 -59145725 - MER94 DNA DNA 0 134 54 2247 66 7 43 chr15 26550029 26550333 -59145421 + AluSc SINE Alu 1 293 -16 364 244 74 82 chr15 26550333 26550387 -59145367 - MER94 DNA DNA -80 54 1 186 299 60 15 chr15 26550751 26550818 -59144936 + L2 LINE L2 3202 3271 -1 2260 116 0 0 chr15 26551155 26551465 -59144289 - AluSx SINE Alu -2 310 1 2006 217 21 21 chr15 26551465 26551944 -59143810 - L1ME1 LINE L1 -45 6121 5643 1143 209 178 77 chr15 26551946 26552427 -59143327 + MLT1E LTR MaLR 1 643 -11 1941 194 19 13 chr15 26552441 26553071 -59142683 - L1ME1 LINE L1 -520 5646 4855 199 313 73 0 chr15 26553180 26553276 -59142478 + L2 LINE L2 3200 3302 -11 22 35 0 0 chr15 26553372 26553401 -59142353 + AT_rich Low_complexity Low_complexity 1 29 0 396 232 45 9 chr15 26553451 26553563 -59142191 - LTR33 LTR ERVL 0 521 406 472 211 0 0 chr15 26553663 26553753 -59142001 + MER34 LTR ERV1 1 90 -452 2322 106 3 0 chr15 26553945 26554257 -59141497 + AluSq SINE Alu 1 313 0 516 209 65 22 chr15 26554442 26554581 -59141173 + L2 LINE L2 3169 3313 0 204 219 27 55 chr15 26554604 26554677 -59141077 - L2 LINE L2 -104 3209 3139 333 182 250 0 chr15 26554745 26554833 -59140921 - MIR SINE MIR -77 185 76 296 286 171 0 chr15 26554859 26554964 -59140790 - L2 LINE L2 0 3272 3150 542 164 179 0 chr15 26555005 26555206 -59140548 + Charlie5 DNA MER1_type 2330 2566 -46 457 192 10 67 chr15 26555208 26555243 -59140511 - MER5A DNA MER1_type -83 106 71 2366 61 37 0 chr15 26555243 26555537 -59140217 - AluY SINE Alu -6 305 1 457 192 10 67 chr15 26555537 26555605 -59140149 - MER5A DNA MER1_type -118 71 9 2197 92 30 0 chr15 26555883 26556178 -59139576 + AluSq SINE Alu 1 304 -9 244 265 103 0 chr15 26556418 26556486 -59139268 - L2 LINE L2 -213 3059 2985 2243 96 3 7 chr15 26556802 26557105 -59138649 - AluSq SINE Alu -11 302 1 306 247 68 0 chr15 26557489 26557562 -59138192 + MIR SINE MIR 31 108 -100 2184 108 3 3 chr15 26557883 26558180 -59137574 + AluSq SINE Alu 1 297 -16 368 313 0 46 chr15 26558778 26558909 -59136845 + MIR3 SINE MIR 13 137 -71 183 42 0 0 chr15 26559344 26559368 -59136386 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 182 114 0 29 chr15 26560479 26560514 -59135240 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2360 93 3 0 chr15 26560517 26560828 -59134926 - AluSp SINE Alu -1 312 1 2079 114 0 3 chr15 26561224 26561514 -59134240 - AluSx SINE Alu -18 294 6 1091 250 120 24 chr15 26561782 26562198 -59133556 - Charlie7 DNA MER1_type -2101 511 56 1933 182 35 56 chr15 26562331 26562842 -59132912 - L1MB8 LINE L1 0 6178 5675 1852 120 51 4 chr15 26563201 26563477 -59132277 - AluSx SINE Alu -19 293 5 399 264 54 87 chr15 26563486 26563763 -59131991 - L1MC/D LINE L1 -1985 5823 5556 2065 141 0 0 chr15 26563785 26564090 -59131664 - AluSg SINE Alu -5 305 1 3374 163 63 9 chr15 26564324 26564961 -59130793 - LTR51 LTR ERV1 0 671 1 282 258 45 22 chr15 26564964 26565053 -59130701 - L1MC/D LINE L1 -2082 4064 3974 1837 183 116 21 chr15 26565114 26565535 -59130219 + LTR2B LTR ERV1 30 490 0 2016 145 40 38 chr15 26565535 26565934 -59129820 + LTR23 LTR ERV1 37 436 -1 35 0 0 0 chr15 26565945 26565980 -59129774 + AT_rich Low_complexity Low_complexity 1 35 0 544 320 24 27 chr15 26566011 26566345 -59129409 - L1MC/D LINE L1 -2232 3914 3582 26 30 0 0 chr15 26566487 26566520 -59129234 + AT_rich Low_complexity Low_complexity 1 33 0 28 61 0 0 chr15 26566728 26566777 -59128977 + AT_rich Low_complexity Low_complexity 1 49 0 337 283 8 33 chr15 26567300 26567320 -59128434 + L1MC4 LINE L1 6593 6612 -1430 2235 100 3 41 chr15 26567320 26567639 -59128115 + AluSx SINE Alu 1 307 -5 337 283 8 33 chr15 26567639 26567738 -59128016 + L1MC4 LINE L1 6612 6709 -1333 448 181 0 19 chr15 26567738 26567843 -59127911 + (TA)n Simple_repeat Simple_repeat 2 104 0 23 54 0 0 chr15 26568490 26568527 -59127227 + AT_rich Low_complexity Low_complexity 1 37 0 325 241 12 12 chr15 26568686 26568769 -59126985 - MIR SINE MIR -69 193 111 250 228 108 18 chr15 26568863 26568990 -59126764 - MIR3 SINE MIR -74 134 9 243 125 0 0 chr15 26569081 26569121 -59126633 + (T)n Simple_repeat Simple_repeat 1 40 0 240 361 143 13 chr15 26569770 26570147 -59125607 + L2 LINE L2 2434 2859 -455 420 102 45 23 chr15 26570473 26570561 -59125193 + CT-rich Low_complexity Low_complexity 2 91 0 1711 160 38 17 chr15 26570569 26570856 -59124898 - AluJb SINE Alu -19 293 1 1348 80 0 43 chr15 26570953 26571141 -59124613 - AluSg/x SINE Alu -10 302 123 584 181 16 0 chr15 26571153 26571280 -59124474 - L1MC4 LINE L1 0 8042 7914 6779 129 15 4 chr15 26571299 26572548 -59123206 - L1MA3 LINE L1 0 7724 6462 4506 156 37 19 chr15 26572544 26573013 -59122741 - L1MA3 LINE L1 -2920 4645 4186 * 2465 80 3 0 chr15 26573013 26573315 -59122439 + AluSp SINE Alu 1 303 -10 4506 156 37 19 chr15 26573315 26574427 -59121327 - L1MA3 LINE L1 -3379 4186 3032 3867 152 31 16 chr15 26574438 26575177 -59120577 - L1PA16 LINE L1 -11 6155 5406 * 11541 180 40 23 chr15 26575165 26575986 -59119768 - L1MA3 LINE L1 -4518 3047 2242 2493 83 3 0 chr15 26575986 26576288 -59119466 - AluSc SINE Alu -6 303 1 11541 180 40 23 chr15 26576288 26578181 -59117573 - L1MA3 LINE L1 -5323 2242 9 1486 180 131 27 chr15 26578230 26578674 -59117080 - LTR54B LTR ERV1 -8 490 1 809 192 29 0 chr15 26578674 26578846 -59116908 - L1MC4 LINE L1 -181 7861 7685 2993 161 2 22 chr15 26578859 26579398 -59116356 - MER44D DNA MER2_type -21 584 2 376 219 212 7 chr15 26579409 26579546 -59116208 - L1MC4 LINE L1 -366 7676 7512 824 218 26 79 chr15 26579596 26579977 -59115777 + LTR37A LTR ERV1 18 378 -48 2457 145 33 46 chr15 26579991 26580024 -59115730 - LTR54 LTR ERV1 0 510 478 2840 133 9 0 chr15 26580024 26580454 -59115300 + MER57B LTR ERV1 1 434 0 2457 145 33 46 chr15 26580454 26580937 -59114817 - LTR54 LTR ERV1 -32 478 1 2917 208 75 19 chr15 26580954 26581730 -59114024 - L1MC4 LINE L1 -514 7528 6710 1437 211 83 82 chr15 26581728 26581924 -59113830 - L1MC4 LINE L1 -1917 5891 5697 * 357 24 0 0 chr15 26581924 26581966 -59113788 + (TA)n Simple_repeat Simple_repeat 1 42 0 1437 211 83 82 chr15 26581966 26582263 -59113491 - L1MC4 LINE L1 -2111 5697 5402 746 173 8 0 chr15 26582263 26582390 -59113364 - FLAM_C SINE Alu -5 128 1 1437 211 83 82 chr15 26582390 26582438 -59113316 - L1MC4 LINE L1 -2406 5402 5356 2333 103 7 0 chr15 26582438 26582738 -59113016 - AluSx SINE Alu -10 302 1 1437 211 83 82 chr15 26582738 26582830 -59112924 - L1MC4 LINE L1 -2452 5356 5255 384 285 26 16 chr15 26582956 26583149 -59112605 - L1MC4 LINE L1 -1038 5108 4914 2021 119 3 7 chr15 26583156 26583450 -59112304 - AluSc SINE Alu 0 309 17 627 120 10 0 chr15 26583486 26583586 -59112168 + AluSg SINE Alu 1 101 -209 1732 174 4 0 chr15 26583724 26583999 -59111755 - AluSp SINE Alu -37 276 1 445 294 56 16 chr15 26584023 26584157 -59111597 - L1MC4 LINE L1 -1499 4647 4520 2169 104 0 28 chr15 26584157 26584475 -59111279 - AluSg SINE Alu -1 309 1 445 294 56 16 chr15 26584475 26584717 -59111037 - L1MC4 LINE L1 -1626 4520 4256 1044 190 99 18 chr15 26584746 26585030 -59110724 - LTR52 LTR ERVL -107 314 8 268 305 115 24 chr15 26585210 26585715 -59110039 - L1MC4 LINE L1 -2951 3195 2645 1280 170 28 45 chr15 26585951 26586198 -59109556 + AluJo SINE Alu 40 282 -30 1711 151 91 0 chr15 26586504 26586835 -59108919 - MER46B DNA MER2_type 0 236 1 581 128 0 0 chr15 26587276 26587370 -59108384 - AluSp/q SINE Alu -9 304 211 274 331 59 7 chr15 26587451 26587587 -59108167 - MIR SINE MIR 0 262 120 416 133 0 13 chr15 26587916 26587991 -59107763 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1622 211 13 0 chr15 26587996 26588308 -59107446 - 7SLRNA srpRNA srpRNA -4 316 1 418 311 81 12 chr15 26589294 26589455 -59106299 - MIR3 SINE MIR -15 193 22 1484 205 120 28 chr15 26589466 26589890 -59105864 + MLT1C LTR MaLR 1 463 -4 405 58 0 0 chr15 26590167 26590219 -59105535 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr15 26590416 26590437 -59105317 + AT_rich Low_complexity Low_complexity 1 21 0 736 207 0 0 chr15 26590979 26591119 -59104635 - MSTD LTR MaLR -8 388 249 2328 97 0 3 chr15 26591119 26591418 -59104336 - AluSp SINE Alu -15 298 1 4625 147 23 50 chr15 26591420 26592146 -59103608 - L1MA5 LINE L1 -262 6038 5294 198 0 0 0 chr15 26592146 26592168 -59103586 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2243 100 0 0 chr15 26592170 26592459 -59103295 - AluSx SINE Alu -18 294 6 4625 147 23 50 chr15 26592459 26592946 -59102808 - L1MA5 LINE L1 -1007 5293 4870 1962 126 48 10 chr15 26592946 26593239 -59102515 + AluSx SINE Alu 1 304 -8 4625 147 23 50 chr15 26593239 26593779 -59101975 - L1MA5 LINE L1 -1430 4870 4317 21 0 0 0 chr15 26593798 26593819 -59101935 + AT_rich Low_complexity Low_complexity 1 21 0 13709 181 3 24 chr15 26593825 26595363 -59100391 - L1PB1 LINE L1 -8 6143 4574 483 15 44 0 chr15 26595363 26595431 -59100323 - L1PA3 LINE L1 0 6155 6085 13709 181 3 24 chr15 26595431 26596891 -59098863 - L1PB1 LINE L1 -1577 4574 3252 2213 99 20 0 chr15 26596891 26597185 -59098569 - AluSq SINE Alu -13 300 1 13709 181 3 24 chr15 26597185 26598272 -59097482 - L1PB1 LINE L1 -2899 3252 2144 5301 183 55 6 chr15 26598271 26599517 -59096237 - L1MA5 LINE L1 -1813 4333 3028 * 1998 140 0 7 chr15 26599530 26599855 -59095899 - AluSq SINE Alu 0 323 1 1367 142 0 14 chr15 26599857 26600069 -59095685 - AluSg/x SINE Alu -11 301 93 408 20 0 0 chr15 26600072 26600121 -59095633 + (CA)n Simple_repeat Simple_repeat 1 49 0 2926 160 17 2 chr15 26600125 26600651 -59095103 - MSTA-int LTR MaLR -1117 534 1 2245 149 88 8 chr15 26600651 26601047 -59094707 - MSTA LTR MaLR 0 428 1 8142 200 58 55 chr15 26601047 26601197 -59094557 - L1 LINE L1 -2730 4835 4687 2079 124 0 22 chr15 26601197 26601512 -59094242 - AluSg SINE Alu -2 308 1 8142 200 58 55 chr15 26601512 26602455 -59093299 - L1 LINE L1 -2878 4687 3749 1332 108 0 25 chr15 26602455 26602659 -59093095 - L1PA8 LINE L1 -1 6171 5973 8142 200 58 55 chr15 26602659 26602952 -59092802 - L1 LINE L1 -3816 3749 3458 1621 145 10 17 chr15 26602952 26603241 -59092513 + AluY SINE Alu 1 287 -24 8142 200 58 55 chr15 26603241 26603546 -59092208 - L1 LINE L1 -4107 3458 3155 2198 91 3 33 chr15 26603546 26603853 -59091901 - AluY SINE Alu -13 298 1 8142 200 58 55 chr15 26603853 26606286 -59089468 - L1 LINE L1 -4410 3155 11 265 362 64 11 chr15 26606698 26606792 -59088962 - L2 LINE L2 -4 3268 3170 341 366 43 24 chr15 26606865 26607029 -59088725 + L2 LINE L2 3074 3240 -32 261 314 0 0 chr15 26607172 26607258 -59088496 - L1M4 LINE L1 -2280 3866 3781 296 273 139 51 chr15 26607640 26607856 -59087898 - LTR16C LTR ERVL -1 490 256 670 236 152 28 chr15 26607864 26608045 -59087709 - L1ME LINE L1 -365 5801 5644 1835 179 0 3 chr15 26608045 26608342 -59087412 - AluSx SINE Alu -16 296 1 670 236 152 28 chr15 26608342 26608353 -59087401 - L1ME LINE L1 -522 5644 5636 2468 122 5 19 chr15 26608353 26608722 -59087032 + THE1B LTR MaLR 1 364 0 670 236 152 28 chr15 26608722 26608742 -59087012 - L1ME LINE L1 -530 5636 5620 2002 143 0 7 chr15 26608742 26609035 -59086719 + AluSx SINE Alu 1 291 -21 670 236 152 28 chr15 26609035 26609257 -59086497 - L1ME LINE L1 -546 5620 5313 8972 181 27 9 chr15 26609372 26610484 -59085270 - L1MA4A LINE L1 -308 6697 5606 2313 107 0 13 chr15 26610484 26610801 -59084953 + AluSq SINE Alu 1 313 0 8972 181 27 9 chr15 26610801 26612468 -59083286 - L1MA4A LINE L1 -1399 5606 3868 4941 148 49 15 chr15 26612480 26613897 -59081857 - L1PA16 LINE L1 -9 6157 4692 801 294 4 7 chr15 26613930 26614199 -59081555 - L1PA12 LINE L1 -5132 2449 2182 1884 151 39 39 chr15 26614389 26614726 -59081028 + MER1B DNA MER1_type 1 337 0 287 323 0 0 chr15 26614783 26614879 -59080875 - L1PA12 LINE L1 -5400 2181 2086 1122 338 29 39 chr15 26615011 26615626 -59080128 - L1PA12 LINE L1 -6177 1397 789 10832 191 86 44 chr15 26615655 26617764 -59077990 - L1MA4A LINE L1 -2966 3882 1864 480 35 0 0 chr15 26617764 26617822 -59077932 + (TA)n Simple_repeat Simple_repeat 2 59 0 2140 138 0 3 chr15 26617822 26618127 -59077627 - AluSx SINE Alu -8 304 1 10832 191 86 44 chr15 26618127 26619717 -59076037 - L1MA4A LINE L1 -4983 1865 28 1843 152 139 16 chr15 26620202 26620583 -59075171 - MSTA LTR MaLR 0 428 1 8286 191 30 5 chr15 26620583 26622193 -59073561 - MSTA-int LTR MaLR 0 1651 1 2201 123 129 11 chr15 26622195 26622576 -59073178 - MSTA LTR MaLR -2 426 1 454 236 73 9 chr15 26623435 26623545 -59072209 - L1MC4 LINE L1 -607 7435 7319 2306 119 3 6 chr15 26623546 26623898 -59071856 - THE1B LTR MaLR -13 351 1 2265 105 0 0 chr15 26623903 26624197 -59071557 - AluSg SINE Alu -16 294 1 852 203 42 97 chr15 26624198 26624570 -59071184 - L1MC4 LINE L1 -715 7327 6954 239 242 265 23 chr15 26625416 26625548 -59070206 + MIR SINE MIR 28 191 -71 2375 87 0 0 chr15 26626597 26626907 -59068847 - AluSg SINE Alu 0 310 1 21 71 0 0 chr15 26626956 26626998 -59068756 + AT_rich Low_complexity Low_complexity 1 42 0 318 249 114 0 chr15 26627723 26627831 -59067923 + MIR SINE MIR 35 141 -67 1289 332 159 19 chr15 26629485 26630873 -59064881 - L2 LINE L2 -1 3271 1685 269 250 15 0 chr15 26631251 26631319 -59064435 - MIR3 SINE MIR -7 201 133 365 236 91 0 chr15 26631319 26631429 -59064325 - LTR33 LTR ERVL 0 521 402 1003 282 151 19 chr15 26634419 26634930 -59060824 - L2 LINE L2 -19 3294 2708 188 67 33 0 chr15 26635001 26635031 -59060723 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 265 262 121 54 chr15 26636894 26637043 -59058711 + MIR SINE MIR 41 199 -63 4843 42 5 3 chr15 26637187 26637777 -59057977 + LTR10C LTR ERV1 1 591 0 360 400 56 0 chr15 26637984 26638199 -59057555 - MIR SINE MIR -34 228 2 189 296 88 32 chr15 26638423 26638548 -59057206 - L2 LINE L2 -20 3293 3162 1021 212 69 69 chr15 26638574 26638966 -59056788 + L1M4 LINE L1 3587 3978 -2168 266 268 5 132 chr15 26638961 26639066 -59056688 + L1ME3 LINE L1 5962 6030 -132 * 1110 162 29 0 chr15 26639066 26639276 -59056478 - L1MB1 LINE L1 -1 6167 5952 266 268 5 132 chr15 26639276 26639375 -59056379 + L1ME3 LINE L1 6030 6140 -22 24 32 0 0 chr15 26639521 26639552 -59056202 + AT_rich Low_complexity Low_complexity 1 31 0 2171 110 3 3 chr15 26639552 26639844 -59055910 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr15 26639848 26639871 -59055883 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 300 0 33 chr15 26639878 26639998 -59055756 - L1MB1 LINE L1 -1920 5888 5773 590 299 57 4 chr15 26640083 26640433 -59055321 - L1ME4a LINE L1 -295 5826 5450 431 92 0 0 chr15 26641014 26641079 -59054675 - MER41B LTR ERV1 -90 545 481 207 0 0 0 chr15 26641409 26641432 -59054322 + (CAT)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr15 26642073 26642113 -59053641 + AT_rich Low_complexity Low_complexity 1 40 0 919 199 135 13 chr15 26642447 26642759 -59052995 - L1MC4 LINE L1 0 8042 7693 200 233 0 0 chr15 26642763 26642806 -59052948 + T-rich Low_complexity Low_complexity 1 43 0 688 246 36 25 chr15 26642914 26643191 -59052563 - L1MC4 LINE L1 -373 7669 7390 473 267 85 48 chr15 26643832 26644184 -59051570 + HAL1 LINE L1 1296 1660 -847 462 248 0 0 chr15 26644186 26644303 -59051451 + HAL1 LINE L1 1697 1813 -694 378 263 34 62 chr15 26644437 26644616 -59051138 + HAL1 LINE L1 1920 2093 -414 636 274 177 26 chr15 26644851 26645190 -59050564 - L2 LINE L2 -1 3312 2923 257 246 0 15 chr15 26645228 26645293 -59050461 - MIR SINE MIR -77 185 122 192 342 0 81 chr15 26645339 26645450 -59050304 - L2 LINE L2 -188 3084 2983 324 0 0 0 chr15 26645528 26645564 -59050190 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr15 26645563 26645589 -59050165 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1306 36 21 10 chr15 26645589 26645781 -59049973 - L1P1 LINE L1 -708 5447 5254 189 250 21 0 chr15 26646693 26646741 -59049013 - L2 LINE L2 0 3272 3224 264 290 145 8 chr15 26648080 26648183 -59047571 - MIR SINE MIR -63 145 32 37367 67 6 49 chr15 26648606 26650340 -59045414 - L1PA3 LINE L1 0 6155 4347 3185 34 0 3 chr15 26650340 26650724 -59045030 - L1PA3 LINE L1 -3 6152 5770 393 55 0 0 chr15 26650728 26650783 -59044971 - L1PA3 LINE L1 0 6155 6101 37367 67 6 49 chr15 26650783 26655484 -59040270 - L1PA3 LINE L1 -1811 4344 1 952 267 81 26 chr15 26655697 26656175 -59039579 - MLT1H LTR MaLR 0 549 12 2314 137 146 2 chr15 26656813 26657237 -59038517 - MER31A LTR ERV1 0 485 1 504 240 178 45 chr15 26657846 26658133 -59037621 - L2 LINE L2 -1 3312 2988 24 0 0 0 chr15 26659336 26659360 -59036394 + AT_rich Low_complexity Low_complexity 1 24 0 525 321 126 16 chr15 26659508 26659826 -59035928 - L3 LINE CR1 -123 1454 1102 819 225 115 5 chr15 26661275 26661484 -59034270 + MIR SINE MIR 3 234 -28 277 281 168 87 chr15 26661874 26662059 -59033695 + MIR SINE MIR 28 227 -35 184 239 30 45 chr15 26662162 26662229 -59033525 + MER5A DNA MER1_type 10 75 -114 * 520 223 182 7 chr15 26662173 26662321 -59033433 - MER5A DNA MER1_type -7 182 9 355 224 238 14 chr15 26663630 26663773 -59031981 - LTR33 LTR ERVL -5 516 342 247 302 23 0 chr15 26663802 26663888 -59031866 - LTR33 LTR ERVL -343 178 91 6206 120 73 12 chr15 26663888 26664997 -59030757 - Tigger3b DNA MER2_type 0 1231 55 313 238 36 0 chr15 26665025 26665109 -59030645 - LTR33 LTR ERVL -427 94 8 28 0 0 0 chr15 26666565 26666593 -59029161 + AT_rich Low_complexity Low_complexity 1 28 0 198 91 0 0 chr15 26666666 26666699 -59029055 + (T)n Simple_repeat Simple_repeat 1 33 0 985 135 60 22 chr15 26666720 26666905 -59028849 - AluY SINE Alu -1 310 119 2790 16 0 0 chr15 26666918 26667229 -59028525 - AluYa5 SINE Alu 0 311 1 476 219 18 9 chr15 26667281 26667395 -59028359 + AluY SINE Alu 3 117 -194 234 276 0 16 chr15 26667589 26667716 -59028038 + (TTA)n Simple_repeat Simple_repeat 1 125 0 1988 99 7 3 chr15 26667832 26668116 -59027638 + AluY SINE Alu 19 303 -8 2480 53 3 0 chr15 26668280 26668584 -59027170 + AluY SINE Alu 1 305 -6 611 282 137 34 chr15 26668940 26669084 -59026670 + MIR SINE MIR 3 131 -131 2026 127 21 26 chr15 26669084 26669461 -59026293 - THE1C LTR MaLR 0 375 1 611 282 137 34 chr15 26669461 26669550 -59026204 + MIR SINE MIR 131 260 -2 309 272 189 20 chr15 26669760 26669977 -59025777 + MIR SINE MIR 14 262 0 226 309 39 83 chr15 26670647 26670871 -59024883 - L2 LINE L2 -278 2994 2783 2285 109 0 0 chr15 26671131 26671434 -59024320 - AluSc SINE Alu -6 303 1 418 326 88 6 chr15 26672039 26672220 -59023534 - MER117 DNA MER1_type -1 196 1 695 291 60 87 chr15 26673257 26673768 -59021986 + L2 LINE L2 2774 3272 0 21 0 0 0 chr15 26674742 26674763 -59020991 + AT_rich Low_complexity Low_complexity 1 21 0 1026 314 151 65 chr15 26674984 26676167 -59019587 + L2 LINE L2 1198 2481 -833 594 334 114 60 chr15 26676171 26676708 -59019046 + L2 LINE L2 2670 3272 0 390 317 45 60 chr15 26677832 26678097 -59017657 + L2 LINE L2 3028 3288 -25 649 277 95 40 chr15 26678368 26678693 -59017061 + LTR16C LTR ERVL 149 491 0 252 316 79 0 chr15 26679717 26679793 -59015961 + MIR3 SINE MIR 9 90 -118 1374 162 0 0 chr15 26679793 26680009 -59015745 - AluSg/x SINE Alu -1 311 96 207 69 0 0 chr15 26680923 26680952 -59014802 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 349 63 0 chr15 26681566 26681629 -59014125 - L2 LINE L2 -60 3212 3146 921 201 98 5 chr15 26682269 26682463 -59013291 + MER58A DNA MER1_type 10 221 -3 1723 166 41 3 chr15 26682666 26683036 -59012718 + AluSx SINE Alu 1 381 0 232 411 26 22 chr15 26683065 26683291 -59012463 - L2 LINE L2 -237 3035 2809 307 323 102 56 chr15 26683434 26683827 -59011927 - L2 LINE L2 0 3272 2862 299 211 0 13 chr15 26683990 26684066 -59011688 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chr15 26684159 26684184 -59011570 + (TC)n Simple_repeat Simple_repeat 2 26 0 182 293 52 0 chr15 26684373 26684431 -59011323 + L2 LINE L2 2698 2758 -556 2550 180 10 2 chr15 26684970 26685453 -59010301 - L1PA15 LINE L1 -2 6163 5677 708 219 12 18 chr15 26685453 26685612 -59010142 - AluSq SINE Alu -14 299 140 2023 143 0 3 chr15 26685893 26686193 -59009561 - AluSg SINE Alu -11 299 1 13510 208 25 4 chr15 26686194 26689004 -59006750 - L1PA15 LINE L1 -478 5687 2938 725 0 0 12 chr15 26689004 26689090 -59006664 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 13510 208 25 4 chr15 26689090 26689823 -59005931 - L1PA15 LINE L1 -3227 2938 2055 2646 91 13 11 chr15 26689823 26690197 -59005557 + THE1C LTR MaLR 1 375 0 13510 208 25 4 chr15 26690197 26690426 -59005328 - L1PA15 LINE L1 -4110 2055 1832 469 250 102 49 chr15 26691272 26691461 -59004293 - MIR SINE MIR -56 206 6 202 188 0 0 chr15 26693129 26693161 -59002593 + polypurine Low_complexity Low_complexity 4 35 0 729 295 66 16 chr15 26693602 26693968 -59001786 - MLT1I LTR MaLR -21 388 5 283 297 123 0 chr15 26695638 26695776 -58999978 - L2 LINE L2 0 3313 3159 250 354 126 37 chr15 26696208 26696454 -58999300 - L2 LINE L2 -22 3250 2983 475 287 133 10 chr15 26697942 26698137 -58997617 + L3 LINE CR1 1014 1232 -345 404 243 0 10 chr15 26698557 26698660 -58997094 + LTR67 LTR ERVL 456 557 0 6095 135 6 19 chr15 26698733 26698912 -58996842 - L1MA5 LINE L1 0 6300 6120 2118 94 52 0 chr15 26698912 26699200 -58996554 - AluSp SINE Alu -10 303 1 6095 135 6 19 chr15 26699200 26700454 -58995300 - L1MA5 LINE L1 -180 6120 4885 307 311 95 33 chr15 26701115 26701421 -58994333 + LTR16C LTR ERVL 167 491 0 1112 232 40 88 chr15 26701554 26701976 -58993778 + MLT2B3 LTR ERVL 153 554 0 419 263 167 0 chr15 26702042 26702156 -58993598 + L3 LINE CR1 1238 1370 -207 547 309 12 0 chr15 26702376 26702541 -58993213 - Charlie8 DNA MER1_type -2152 265 99 207 342 105 26 chr15 26702903 26703017 -58992737 + L2 LINE L2 3170 3292 -21 1121 290 74 20 chr15 26703867 26704274 -58991480 - L2 LINE L2 -2 3311 2883 24 53 0 0 chr15 26705211 26705249 -58990505 + AT_rich Low_complexity Low_complexity 1 38 0 482 215 70 59 chr15 26705404 26705590 -58990164 + L1MC5 LINE L1 7503 7690 -271 1969 63 0 0 chr15 26705668 26705922 -58989832 + L1PA5 LINE L1 5901 6154 0 622 280 98 0 chr15 26706086 26706322 -58989432 - LTR33 LTR ERVL -260 261 3 332 246 131 31 chr15 26706394 26706524 -58989230 - MIR3 SINE MIR -3 205 63 6458 51 9 2 chr15 26706545 26707363 -58988391 + L1PA7 LINE L1 5332 6154 0 516 248 128 0 chr15 26707581 26707863 -58987891 - L1ME4a LINE L1 -31 6090 5773 201 122 20 61 chr15 26707925 26707974 -58987780 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr15 26707992 26708017 -58987737 + AT_rich Low_complexity Low_complexity 1 25 0 276 315 39 16 chr15 26708053 26708180 -58987574 + MIR3 SINE MIR 11 140 -68 2209 131 0 10 chr15 26708236 26708548 -58987206 - AluSx SINE Alu -3 309 1 695 287 126 0 chr15 26710314 26710697 -58985057 - L2 LINE L2 -93 3220 2772 261 200 18 0 chr15 26710775 26710830 -58984924 - L2 LINE L2 -827 2487 2432 219 188 0 42 chr15 26710892 26710940 -58984814 - MIR3 SINE MIR -2 206 161 2417 80 0 10 chr15 26711971 26712284 -58983470 + AluY SINE Alu 2 311 0 22 0 0 0 chr15 26713153 26713175 -58982579 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr15 26714053 26714085 -58981669 + AT_rich Low_complexity Low_complexity 1 32 0 2273 89 31 0 chr15 26715550 26715843 -58979911 - AluSg SINE Alu -7 303 2 21 0 0 0 chr15 26716079 26716100 -58979654 + AT_rich Low_complexity Low_complexity 1 21 0 258 105 0 0 chr15 26717898 26717936 -58977818 + (ATG)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr15 26718999 26719035 -58976719 + AT_rich Low_complexity Low_complexity 1 36 0 473 239 95 112 chr15 26719611 26720099 -58975655 + Charlie8 DNA MER1_type 1 470 -1947 987 156 0 40 chr15 26720099 26720272 -58975482 + FRAM SINE Alu 1 163 -13 609 224 70 0 chr15 26721205 26721361 -58974393 - MIR SINE MIR -3 259 93 288 0 0 0 chr15 26721382 26721414 -58974340 + (CA)n Simple_repeat Simple_repeat 1 32 0 438 156 52 0 chr15 26722451 26722547 -58973207 - L1MB7 LINE L1 -13 6171 6071 587 291 79 23 chr15 26722672 26723026 -58972728 - MARNA DNA Mariner -126 460 87 21 0 0 0 chr15 26724240 26724261 -58971493 + AT_rich Low_complexity Low_complexity 1 21 0 840 174 0 7 chr15 26725142 26725280 -58970474 - AluJo SINE Alu -6 306 170 725 131 0 57 chr15 26725281 26725403 -58970351 - AluJo SINE Alu -197 115 1 32 67 0 0 chr15 26725915 26725975 -58969779 + AT_rich Low_complexity Low_complexity 1 60 0 5083 124 46 2 chr15 26726003 26726809 -58968945 - L1PA16 LINE L1 -9 6472 5632 4352 55 37 0 chr15 26726821 26727386 -58968368 - L1PA7 LINE L1 0 6154 5569 11884 110 19 36 chr15 26727390 26729876 -58965878 - L1PA16 LINE L1 -3961 2500 5 4068 211 15 2 chr15 26729881 26730768 -58964986 - L1P LINE L1 -815 6034 5137 1058 172 24 0 chr15 26730778 26730947 -58964807 - AluSx SINE Alu -139 173 1 6415 175 31 16 chr15 26730948 26732749 -58963005 - L1PA15-16 LINE L1 -3101 3748 1915 21 0 0 0 chr15 26733658 26733679 -58962075 + AT_rich Low_complexity Low_complexity 1 21 0 321 361 0 0 chr15 26735081 26735189 -58960565 - MIR3 SINE MIR -6 202 95 3545 139 53 2 chr15 26735318 26735907 -58959847 + LTR31 LTR ERV1 1 619 0 2371 108 0 0 chr15 26737032 26737338 -58958416 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 26738586 26738621 -58957133 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr15 26739141 26739172 -58956582 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 826 206 106 0 chr15 26739450 26739639 -58956115 + MER3 DNA MER1_type 1 209 0 1137 278 28 7 chr15 26740886 26741172 -58954582 - LTR16A LTR ERVL -5 445 154 1279 255 130 40 chr15 26741172 26741718 -58954036 - MLT1G1 LTR MaLR 0 595 1 1777 209 70 5 chr15 26741894 26742291 -58953463 + MER110 LTR ERV1 57 479 -12 42552 34 23 2 chr15 26743530 26749549 -58946205 + L1PA2 LINE L1 2 6155 0 22 0 0 0 chr15 26749784 26749806 -58945948 + AT_rich Low_complexity Low_complexity 1 22 0 792 108 48 0 chr15 26750312 26750498 -58945256 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr15 26750498 26750526 -58945228 + AT_rich Low_complexity Low_complexity 1 28 0 10043 192 12 5 chr15 26750539 26751423 -58944331 - L1PA15 LINE L1 -4 6161 5284 1894 147 155 13 chr15 26751423 26751798 -58943956 + MSTA LTR MaLR 1 428 0 10043 192 12 5 chr15 26751798 26753782 -58941972 - L1PA15 LINE L1 -881 5284 3275 32 43 0 0 chr15 26756273 26756319 -58939435 + AT_rich Low_complexity Low_complexity 1 46 0 719 245 116 37 chr15 26757113 26757510 -58938244 + L1M4c LINE L1 1133 1625 -4759 2302 67 44 0 chr15 26758255 26758553 -58937201 - AluY SINE Alu 0 311 1 721 340 52 17 chr15 26758938 26759229 -58936525 - L3 LINE CR1 -124 1453 1153 1220 187 78 34 chr15 26759229 26759497 -58936257 + MLT1A2 LTR MaLR 95 374 0 265 376 55 0 chr15 26759500 26759609 -58936145 - L3 LINE CR1 -941 636 522 26 0 0 0 chr15 26759918 26759944 -58935810 + AT_rich Low_complexity Low_complexity 1 26 0 345 139 0 109 chr15 26760917 26761119 -58934635 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 265 260 6 29 chr15 26761077 26761250 -58934504 + (AAATG)n Simple_repeat Simple_repeat 2 170 0 * 357 141 0 96 chr15 26761283 26761482 -58934272 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 238 315 69 15 chr15 26761485 26761615 -58934139 - MIR SINE MIR -60 202 66 1867 120 43 4 chr15 26763760 26764036 -58931718 - AluSx SINE Alu -25 287 1 3015 207 40 8 chr15 26765327 26766085 -58929669 - L1M4 LINE L1 -996 5150 4369 9606 152 46 11 chr15 26766093 26768851 -58926903 - L1MA1 LINE L1 -171 7550 4688 4708 166 23 1 chr15 26768849 26769640 -58926114 - L1MA1 LINE L1 -5707 1858 1051 * 28 29 0 0 chr15 26769650 26769685 -58926069 + AT_rich Low_complexity Low_complexity 1 35 0 328 273 103 64 chr15 26770001 26770043 -58925711 + MLT1J LTR MaLR 207 246 -265 2212 176 19 35 chr15 26770043 26770476 -58925278 - MSTB LTR MaLR 0 426 1 328 273 103 64 chr15 26770476 26770676 -58925078 + MLT1J LTR MaLR 246 371 -140 256 308 0 19 chr15 26770817 26770921 -58924833 + L1 LINE L1 4089 4190 -1956 23 0 0 0 chr15 26771252 26771275 -58924479 + AT_rich Low_complexity Low_complexity 1 23 0 775 153 53 7 chr15 26772420 26772570 -58923184 + Tigger1 DNA MER2_type 1 157 -2261 * 1293 154 9 0 chr15 26772559 26772773 -58922981 + Tigger1 DNA MER2_type 2202 2417 -1 204 254 239 0 chr15 26773540 26773611 -58922143 - L2 LINE L2 0 3272 3185 738 308 61 4 chr15 26774436 26774683 -58921071 + MIR SINE MIR 2 262 0 11088 186 29 8 chr15 26774691 26778832 -58916922 + L1PB3 LINE L1 2635 6861 -9 843 302 37 39 chr15 26779183 26779593 -58916161 + MLT1I LTR MaLR 1 409 0 298 309 71 16 chr15 26780144 26780270 -58915484 + MIR SINE MIR 19 151 -57 3832 160 82 28 chr15 26780460 26781203 -58914551 + LTR39 LTR ERV1 1 783 0 21 0 0 0 chr15 26781518 26781539 -58914215 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 26782656 26782679 -58913075 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 26783079 26783100 -58912654 + AT_rich Low_complexity Low_complexity 1 21 0 259 241 298 21 chr15 26783155 26783296 -58912458 - MER5A DNA MER1_type -1 188 9 210 296 57 0 chr15 26783363 26783451 -58912303 + MIR SINE MIR 127 219 -43 * 1686 270 107 2 chr15 26783444 26783984 -58911770 - L2 LINE L2 -1764 1550 954 225 213 21 85 chr15 26783987 26784081 -58911673 - L1M4 LINE L1 -3390 2756 2669 251 257 62 28 chr15 26784331 26784475 -58911279 - L1M4 LINE L1 -3783 2363 2215 42587 35 21 1 chr15 26785176 26791207 -58904547 + L1PA2 LINE L1 1 6155 0 264 327 64 26 chr15 26791240 26791396 -58904358 + L1MCc LINE L1 1180 1341 -5082 17337 186 29 14 chr15 26791459 26795422 -58900332 - L1PA13 LINE L1 -1466 5331 1254 180 0 0 0 chr15 26795422 26795442 -58900312 + (CAG)n Simple_repeat Simple_repeat 1 20 0 17337 186 29 14 chr15 26795442 26796716 -58899038 - L1PA13 LINE L1 -5543 1254 1 181 0 33 33 chr15 26796831 26796861 -58898893 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1544 193 71 7 chr15 26796888 26797266 -58898488 - L1ME1 LINE L1 -3 6163 5771 744 308 94 19 chr15 26797291 26797810 -58897944 - HAL1 LINE L1 -808 1699 1142 397 308 56 7 chr15 26798517 26798660 -58897094 + MIR SINE MIR 11 160 -102 252 137 0 0 chr15 26798696 26798747 -58897007 + (TA)n Simple_repeat Simple_repeat 2 52 0 264 197 45 30 chr15 26798759 26798825 -58896929 + MIR SINE MIR 196 262 0 356 271 122 0 chr15 26798961 26799068 -58896686 + MIR SINE MIR 122 241 -21 243 309 86 0 chr15 26799407 26799488 -58896266 - MIR SINE MIR -143 119 32 330 67 0 0 chr15 26800152 26800197 -58895557 + (TG)n Simple_repeat Simple_repeat 1 45 0 903 327 161 7 chr15 26802160 26802305 -58893449 + L2 LINE L2 2361 2482 -790 2142 109 19 53 chr15 26802305 26802680 -58893074 + THE1B LTR MaLR 1 362 -2 903 327 161 7 chr15 26802680 26803123 -58892631 + L2 LINE L2 2482 3043 -229 212 196 0 22 chr15 26803483 26803529 -58892225 + GA-rich Low_complexity Low_complexity 2 46 0 296 393 47 9 chr15 26803716 26803930 -58891824 - L2 LINE L2 -540 2774 2553 343 316 71 37 chr15 26805175 26805339 -58890415 + L2 LINE L2 2762 2928 -344 457 325 40 7 chr15 26805352 26805503 -58890251 + L2 LINE L2 3158 3313 0 3181 186 28 0 chr15 26805641 26805950 -58889804 + L1PA15 LINE L1 4082 4381 -1765 345 62 0 0 chr15 26805950 26805998 -58889756 + (CA)n Simple_repeat Simple_repeat 1 48 0 3181 186 28 0 chr15 26805998 26806300 -58889454 + L1PA15 LINE L1 4381 4710 -1436 1418 205 23 4 chr15 26806300 26806559 -58889195 + AluJo SINE Alu 1 264 -48 5186 127 58 0 chr15 26806577 26807986 -58887768 + L1PA15 LINE L1 4703 6165 0 28 0 0 0 chr15 26808033 26808061 -58887693 + AT_rich Low_complexity Low_complexity 1 28 0 265 352 93 6 chr15 26808761 26808923 -58886831 + L2 LINE L2 2709 2884 -430 37 0 0 0 chr15 26808949 26808986 -58886768 + AT_rich Low_complexity Low_complexity 1 37 0 1266 275 93 24 chr15 26809131 26809670 -58886084 + L1MC4 LINE L1 5387 5962 -1846 2321 87 0 3 chr15 26809898 26810196 -58885558 - AluY SINE Alu -14 297 1 306 0 0 0 chr15 26811311 26811345 -58884409 + (GA)n Simple_repeat Simple_repeat 2 35 0 192 234 0 0 chr15 26811345 26811392 -58884362 + (TG)n Simple_repeat Simple_repeat 2 48 0 423 355 18 0 chr15 26811748 26811914 -58883840 - MIR3 SINE MIR -9 199 31 195 139 0 0 chr15 26812439 26812475 -58883279 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 71 0 0 chr15 26814181 26814223 -58881531 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 26814719 26814754 -58881000 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 26814998 26815025 -58880729 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 26815154 26815175 -58880579 + AT_rich Low_complexity Low_complexity 1 21 0 351 295 45 0 chr15 26815338 26815450 -58880304 + MIR3 SINE MIR 87 203 -5 189 147 0 0 chr15 26816504 26816538 -58879216 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 316 276 10 31 chr15 26818796 26818894 -58876860 + L1MC4 LINE L1 6614 6709 -1333 * 328 211 58 67 chr15 26818824 26818928 -58876826 - L1MC4 LINE L1 -1326 6716 6614 413 61 0 15 chr15 26818928 26818994 -58876760 + (GA)n Simple_repeat Simple_repeat 2 66 0 419 270 26 9 chr15 26818994 26819109 -58876645 + MER5B DNA MER1_type 59 175 -3 590 216 43 7 chr15 26819366 26819505 -58876249 + L2 LINE L2 2651 2794 -520 427 231 54 8 chr15 26821620 26821750 -58874004 + MER103 DNA DNA 22 157 -9 23 0 0 0 chr15 26821804 26821827 -58873927 + AT_rich Low_complexity Low_complexity 1 23 0 220 309 132 0 chr15 26823596 26823664 -58872090 - L2 LINE L2 -52 3220 3144 35 24 0 0 chr15 26824095 26824137 -58871617 + AT_rich Low_complexity Low_complexity 1 42 0 789 260 24 37 chr15 26825816 26826062 -58869692 - MIR SINE MIR -19 243 1 382 91 0 104 chr15 26826869 26826946 -58868808 - AluS SINE Alu -233 69 1 940 200 17 0 chr15 26827332 26827507 -58868247 - AluSg/x SINE Alu -1 311 134 2147 123 0 3 chr15 26827507 26827815 -58867939 - AluSx SINE Alu -5 307 1 585 76 13 0 chr15 26828229 26828308 -58867446 - MADE1 DNA Mariner 0 80 1 23 54 0 0 chr15 26829227 26829264 -58866490 + AT_rich Low_complexity Low_complexity 1 37 0 907 262 27 0 chr15 26829656 26829877 -58865877 + MIR SINE MIR 36 262 0 541 220 55 0 chr15 26830445 26830554 -58865200 + MIR3 SINE MIR 82 196 -12 181 308 75 47 chr15 26833141 26833248 -58862506 + L2 LINE L2 3197 3306 -7 289 323 203 23 chr15 26833585 26833718 -58862036 - MIR3 SINE MIR -6 202 46 1263 237 164 68 chr15 26835449 26835938 -58859816 - MLT1F LTR MaLR 0 542 7 3670 150 24 3 chr15 26836174 26836759 -58858995 + MSTA-int LTR MaLR 1055 1651 0 1317 122 15 5 chr15 26836759 26836956 -58858798 + MSTA LTR MaLR 1 199 -227 7517 29 1 0 chr15 26836956 26838441 -58857313 + L1PA4 LINE L1 4670 6155 0 381 237 62 0 chr15 26838473 26838570 -58857184 + MER5A DNA MER1_type 9 111 -78 1516 143 4 12 chr15 26838615 26838860 -58856894 + MSTA LTR MaLR 185 427 -1 1805 260 20 24 chr15 26838868 26839418 -58856336 + L1ME1 LINE L1 5610 6157 -9 1283 275 94 8 chr15 26839425 26840222 -58855532 + L1ME LINE L1 1850 2676 -3539 668 285 40 10 chr15 26840226 26840426 -58855328 - MER58C DNA MER1_type -4 211 6 1426 205 80 45 chr15 26840433 26840857 -58854897 + L1ME LINE L1 2673 3111 -3104 313 211 95 21 chr15 26840850 26840945 -58854809 + L1MC4 LINE L1 7914 8015 -27 * 340 233 147 69 chr15 26841412 26841528 -58854226 - MER5B DNA MER1_type -1 177 53 4611 193 13 8 chr15 26842314 26843262 -58852492 - L1PA13 LINE L1 -3146 3651 2700 880 148 0 0 chr15 26843265 26843400 -58852354 - L1PA13 LINE L1 -6190 597 463 1432 199 0 0 chr15 26843408 26843684 -58852070 - L1PA15-16 LINE L1 -4040 2809 2534 1916 168 37 0 chr15 26843689 26843986 -58851768 + AluSx SINE Alu 3 310 -2 400 180 5 0 chr15 26843986 26844072 -58851682 + L1P LINE L1 2392 2480 -3666 2333 242 85 7 chr15 26844153 26844927 -58850827 + L1ME LINE L1 4517 5351 -864 481 184 0 0 chr15 26844927 26845003 -58850751 + FRAM SINE Alu 77 152 -24 446 161 11 0 chr15 26845027 26845114 -58850640 + L1ME LINE L1 5332 5419 -816 * 911 172 25 6 chr15 26845111 26845268 -58850486 + MST-int LTR MaLR 1179 1338 -313 772 209 120 4 chr15 26845263 26845488 -58850266 + L1ME LINE L1 5423 5673 -562 * 2615 153 7 5 chr15 26845490 26845915 -58849839 + MSTB LTR MaLR 1 426 0 4923 178 7 3 chr15 26845915 26846781 -58848973 + MSTB-int LTR MaLR 1 869 -782 232 279 23 23 chr15 26847677 26847763 -58847991 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 289 155 35 0 chr15 26847854 26847912 -58847842 + (TATG)n Simple_repeat Simple_repeat 3 62 0 345 24 0 0 chr15 26848246 26848288 -58847466 + (CA)n Simple_repeat Simple_repeat 2 43 0 499 245 28 63 chr15 26848511 26848654 -58847100 + L2 LINE L2 346 483 -2831 356 233 80 73 chr15 26848649 26848799 -58846955 + L2 LINE L2 3146 3296 -17 * 2056 139 3 0 chr15 26849739 26850040 -58845714 + AluSx SINE Alu 1 302 -10 252 0 0 0 chr15 26850929 26850957 -58844797 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 289 62 31 chr15 26851092 26851189 -58844565 - MIR3 SINE MIR -26 182 83 445 312 5 70 chr15 26852194 26852393 -58843361 + MIR SINE MIR 13 198 -64 368 159 0 0 chr15 26852655 26852718 -58843036 + L1PA15-16 LINE L1 2877 2939 -3910 2158 60 15 96 chr15 26852826 26853160 -58842594 + AluY SINE Alu 5 311 0 2186 190 53 0 chr15 26853185 26853659 -58842095 + L1MA9 LINE L1 5814 6312 0 948 269 67 0 chr15 26853721 26854004 -58841750 + L1MC4 LINE L1 7597 7898 -144 717 206 0 0 chr15 26854430 26854561 -58841193 - FLAM_C SINE Alu -12 131 1 426 20 0 0 chr15 26854598 26854649 -58841105 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 0 0 0 chr15 26854679 26854706 -58841048 + AT_rich Low_complexity Low_complexity 1 27 0 33 80 0 0 chr15 26855327 26855402 -58840352 + AT_rich Low_complexity Low_complexity 1 75 0 255 238 0 16 chr15 26855422 26855485 -58840269 + (CATA)n Simple_repeat Simple_repeat 2 63 0 486 0 0 0 chr15 26855590 26855644 -58840110 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 77 0 0 chr15 26856004 26856056 -58839698 + AT_rich Low_complexity Low_complexity 1 52 0 237 222 48 32 chr15 26856616 26856679 -58839075 - MIR3 SINE MIR -6 202 139 15811 166 26 111 chr15 26856698 26858343 -58837411 - L1PA13 LINE L1 -8 7593 5810 7472 28 4 0 chr15 26858343 26859351 -58836403 - L1PA4 LINE L1 -6 6149 5142 15811 166 26 111 chr15 26859351 26860541 -58835213 - L1PA13 LINE L1 -1791 5810 4520 2605 70 3 20 chr15 26860541 26860896 -58834858 - MER41A LTR ERV1 -88 466 118 15811 166 26 111 chr15 26860896 26862578 -58833176 - L1PA13 LINE L1 -3081 4520 3346 2020 108 38 0 chr15 26862578 26862865 -58832889 + AluSq SINE Alu 3 300 -13 15811 166 26 111 chr15 26862865 26863960 -58831794 - L1PA13 LINE L1 -4255 3346 2159 5651 145 49 21 chr15 26864262 26865393 -58830361 - L1MA4A LINE L1 -3 6300 5137 202 152 43 22 chr15 26865594 26865640 -58830114 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 0 0 0 chr15 26865699 26865723 -58830031 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chr15 26865756 26865777 -58829977 + AT_rich Low_complexity Low_complexity 1 21 0 903 281 63 52 chr15 26865819 26866264 -58829490 + LTR16A LTR ERVL 1 450 0 2016 118 0 0 chr15 26866899 26867178 -58828576 - AluSx SINE Alu -33 279 1 470 217 9 0 chr15 26868516 26868622 -58827132 + MER3 DNA MER1_type 63 122 -87 1401 161 121 3 chr15 26868631 26868979 -58826775 + MER3 DNA MER1_type 2236 2624 0 23 0 0 0 chr15 26869190 26869213 -58826541 + AT_rich Low_complexity Low_complexity 1 23 0 1716 145 60 33 chr15 26869532 26869897 -58825857 - THE1C LTR MaLR 0 375 1 2457 233 45 29 chr15 26870115 26870439 -58825315 + L1M4 LINE L1 2338 2655 -3491 1657 171 150 6 chr15 26870439 26870785 -58824969 - MSTD LTR MaLR 0 396 1 2457 233 45 29 chr15 26870785 26871324 -58824430 + L1M4 LINE L1 2655 3215 -2931 752 249 63 0 chr15 26871341 26871562 -58824192 + L1MCc LINE L1 1119 1353 -5070 406 294 16 0 chr15 26871552 26871678 -58824076 - L1ME LINE L1 -525 5639 5512 * 909 172 0 0 chr15 26871672 26871841 -58823913 + L1 LINE L1 2873 3041 -3105 * 6200 167 24 4 chr15 26871839 26873030 -58822724 + L1MA7 LINE L1 4134 5348 -798 1248 175 26 4 chr15 26873012 26873246 -58822508 + L1MA7 LINE L1 5549 5787 -504 * 259 162 86 0 chr15 26873248 26873353 -58822401 + (TA)n Simple_repeat Simple_repeat 1 114 0 1558 185 51 15 chr15 26873353 26873688 -58822066 + L1MA7 LINE L1 5782 6128 -163 * 4791 150 30 54 chr15 26873685 26874696 -58821058 + L1MA7 LINE L1 5304 6289 -2 2442 229 53 18 chr15 26874709 26875488 -58820266 + L1 LINE L1 3025 3830 -2316 229 300 100 0 chr15 26875489 26875579 -58820175 - L2 LINE L2 -8 3305 3207 * 378 303 106 0 chr15 26875574 26875706 -58820048 - MIR SINE MIR -70 192 47 321 344 16 0 chr15 26876763 26876891 -58818863 + MIR3 SINE MIR 31 160 -48 1288 199 112 85 chr15 26878070 26878562 -58817192 - MLT1D LTR MaLR 0 505 1 2365 94 0 0 chr15 26878792 26879091 -58816663 - AluSg SINE Alu -11 299 1 12206 217 42 10 chr15 26879213 26884239 -58811515 - L1PA16 LINE L1 -9 7595 2374 2306 83 0 23 chr15 26884239 26884539 -58811215 - AluSg SINE Alu -17 293 1 12206 217 42 10 chr15 26884539 26884924 -58810830 - L1PA16 LINE L1 -5230 2374 2003 270 296 65 83 chr15 26885279 26885556 -58810198 - L1M2 LINE L1 -5782 1067 796 747 328 37 12 chr15 26886327 26886730 -58809024 - L1PA16 LINE L1 -7167 414 2 3021 223 10 22 chr15 26886983 26887673 -58808081 + L1PB1 LINE L1 2 683 -6104 * 3846 214 35 41 chr15 26887668 26889313 -58806441 + L1PB1 LINE L1 1329 3007 -3790 17081 157 85 7 chr15 26889316 26892901 -58802853 + L1M1 LINE L1 17 3875 -3690 306 0 0 0 chr15 26892903 26892937 -58802817 + (TCTCCC)n Simple_repeat Simple_repeat 5 38 0 5998 69 20 64 chr15 26892937 26894868 -58800886 + SVA Other Other 72 1383 -3 5371 193 43 9 chr15 26894879 26896155 -58799599 + L1M1 LINE L1 4232 5551 -2014 7807 97 12 40 chr15 26896158 26897473 -58798281 - L1P LINE L1 -3446 2700 1423 6559 26 0 0 chr15 26897473 26898234 -58797520 + L1PA4 LINE L1 5392 6152 -3 10348 190 17 9 chr15 26898275 26901323 -58794431 + L1PB1 LINE L1 3372 6442 -360 500 130 11 0 chr15 26901347 26901439 -58794315 + L1PA15 LINE L1 6065 6157 -8 183 42 0 0 chr15 26901468 26901492 -58794262 + (TA)n Simple_repeat Simple_repeat 1 24 0 2161 120 16 46 chr15 26901494 26901861 -58793893 + L1PB1 LINE L1 6445 6800 -2 570 118 0 0 chr15 26901972 26902065 -58793689 + L1PA15 LINE L1 6065 6157 -8 35 29 5 0 chr15 26902299 26902383 -58793371 + AT_rich Low_complexity Low_complexity 1 49 0 851 138 17 50 chr15 26903448 26903629 -58792125 + MLT1B LTR MaLR 1 175 -215 1753 224 73 14 chr15 26904859 26905639 -58790115 + L1M2a LINE L1 2057 2897 -4599 360 363 8 17 chr15 26905647 26905884 -58789870 + L1M2a LINE L1 1133 1367 -6199 505 196 58 65 chr15 26905884 26906022 -58789732 - Tigger2a DNA MER2_type -297 137 1 305 254 49 23 chr15 26906031 26906160 -58789594 - L1M4c LINE L1 -4418 1965 1461 * 9772 221 35 21 chr15 26906155 26909860 -58785894 - L1MA9 LINE L1 -204 6108 2346 359 272 56 51 chr15 26909860 26910079 -58785675 + MSTB2 LTR MaLR 1 227 -230 2788 218 41 9 chr15 26910111 26911141 -58784613 + L1M2a LINE L1 3345 4409 -3156 228 217 61 0 chr15 26912075 26912190 -58783564 + (TA)n Simple_repeat Simple_repeat 2 123 0 261 193 36 24 chr15 26912898 26912981 -58782773 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 25 51 0 0 chr15 26913081 26913120 -58782634 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr15 26913364 26913388 -58782366 + AT_rich Low_complexity Low_complexity 1 24 0 2357 186 10 14 chr15 26914182 26914670 -58781084 + L1MD1 LINE L1 5757 6242 0 10785 213 34 5 chr15 26914723 26918474 -58777280 - L1PB4 LINE L1 -5 6208 2345 486 0 0 0 chr15 26918474 26918528 -58777226 + (TA)n Simple_repeat Simple_repeat 2 55 0 10785 213 34 5 chr15 26918528 26918593 -58777161 - L1PB4 LINE L1 -3868 2345 2283 3326 200 43 66 chr15 26918594 26918694 -58777060 - L1PB4 LINE L1 -4173 2030 1929 2191 90 52 60 chr15 26918694 26919059 -58776695 - THE1B LTR MaLR -2 362 1 11200 104 12 6 chr15 26919059 26920629 -58775125 - THE1B-int LTR MaLR 0 1580 1 2065 139 51 20 chr15 26920629 26920982 -58774772 - THE1B LTR MaLR 0 364 1 3326 200 43 66 chr15 26920982 26922160 -58773594 - L1PB4 LINE L1 -4271 1932 694 2270 125 31 17 chr15 26923369 26923728 -58772026 + THE1B LTR MaLR 1 364 0 9492 113 12 69 chr15 26923728 26925403 -58770351 + THE1B-int LTR MaLR 1 1580 0 2222 141 5 16 chr15 26925403 26925771 -58769983 + THE1B LTR MaLR 1 364 0 1495 234 49 28 chr15 26925942 26926531 -58769223 + L1ME3A LINE L1 5536 6167 -3 1258 230 124 47 chr15 26927030 26927499 -58768255 - MLT1D LTR MaLR 0 505 1 350 271 132 33 chr15 26927612 26927885 -58767869 + L1MCc LINE L1 24 323 -6100 23 33 0 0 chr15 26928029 26928059 -58767695 + AT_rich Low_complexity Low_complexity 1 30 0 950 340 105 18 chr15 26928218 26929150 -58766604 + L1MCc LINE L1 828 1845 -4891 1581 247 16 7 chr15 26929155 26929608 -58766146 + L1M4 LINE L1 4887 5343 -803 7716 116 4 10 chr15 26929609 26931610 -58764144 + L1PA8 LINE L1 4178 6184 0 351 300 80 60 chr15 26931744 26931994 -58763760 + L1MCc LINE L1 3352 3606 -3335 472 120 0 0 chr15 26932053 26932128 -58763626 + L1PA7 LINE L1 6078 6152 -2 3256 124 36 4 chr15 26932204 26932727 -58763027 + L1PA11 LINE L1 5634 6173 -1 292 233 25 74 chr15 26932756 26932919 -58762835 + L1MCc LINE L1 3689 3843 -3098 2468 251 70 66 chr15 26933015 26934093 -58761661 + HAL1 LINE L1 1240 2321 -186 187 328 17 0 chr15 26934601 26934659 -58761095 - MIR SINE MIR -6 256 198 2661 170 49 42 chr15 26934793 26935346 -58760408 + MER74A LTR ERVL 2 558 0 24 53 0 0 chr15 26935522 26935560 -58760194 + AT_rich Low_complexity Low_complexity 1 38 0 228 375 0 10 chr15 26935623 26935719 -58760035 - MIR SINE MIR -111 151 57 21 82 0 0 chr15 26936337 26936386 -58759368 + AT_rich Low_complexity Low_complexity 1 49 0 342 294 190 27 chr15 26937060 26937244 -58758510 + MIR SINE MIR 7 220 -42 240 298 24 24 chr15 26938833 26938917 -58756837 + L2 LINE L2 3195 3278 -35 339 269 10 19 chr15 26938994 26939098 -58756656 - MER5A DNA MER1_type -77 112 10 2234 107 0 3 chr15 26939221 26939530 -58756224 + AluSg SINE Alu 1 308 -2 191 200 0 0 chr15 26939690 26939725 -58756029 + MIR SINE MIR 228 262 0 433 347 94 18 chr15 26940154 26940485 -58755269 - L2 LINE L2 -778 2536 2181 720 222 12 12 chr15 26940551 26940726 -58755028 + MER33 DNA MER1_type 1 165 -87 709 172 47 0 chr15 26940726 26940854 -58754900 + AluJb SINE Alu 1 134 -178 281 341 96 58 chr15 26941281 26941489 -58754265 - MIR SINE MIR -1 261 46 1850 135 3 36 chr15 26941777 26942081 -58753673 + AluSx SINE Alu 1 294 -18 322 321 36 18 chr15 26943621 26943789 -58751965 + L3b LINE CR1 1324 1494 -89 344 227 7 73 chr15 26944181 26944331 -58751423 + A-rich Low_complexity Low_complexity 3 142 0 234 325 96 0 chr15 26945135 26945218 -58750536 + MIR SINE MIR 33 123 -85 740 115 25 0 chr15 26946898 26947020 -58748734 - L1MA5A LINE L1 0 6297 6173 1778 124 11 0 chr15 26947182 26947455 -58748299 + L1PA16 LINE L1 5885 6160 -6 572 266 0 0 chr15 26948537 26948661 -58747093 - MER94 DNA DNA -1 133 10 3828 188 92 4 chr15 26948673 26949514 -58746240 + MER63C DNA MER1_type 14 928 -2 281 308 9 47 chr15 26949557 26949664 -58746090 - L2 LINE L2 -3 3310 3208 347 291 267 12 chr15 26950422 26950594 -58745160 + MIR SINE MIR 47 262 0 369 331 38 45 chr15 26951003 26951160 -58744594 + MIR3 SINE MIR 5 160 -48 1638 204 29 125 chr15 26951687 26952281 -58743473 + MLT1F1 LTR MaLR 3 564 -3 244 155 17 17 chr15 26952283 26952341 -58743413 + CT-rich Low_complexity Low_complexity 1 58 0 342 326 10 0 chr15 26952455 26952553 -58743201 - MIR SINE MIR -70 138 40 193 281 88 0 chr15 26953439 26953496 -58742258 + L2 LINE L2 3236 3297 -16 1672 139 0 4 chr15 26953769 26954020 -58741734 - AluSg SINE Alu -60 250 1 7337 162 24 29 chr15 26954117 26955562 -58740192 - L1P5 LINE L1 -363 5788 3 261 203 0 43 chr15 26955565 26955634 -58740120 - L1 LINE L1 -1659 4487 4422 24 0 0 0 chr15 26955654 26955678 -58740076 + AT_rich Low_complexity Low_complexity 1 24 0 5992 167 16 13 chr15 26955682 26957903 -58737851 - L1PB1 LINE L1 0 6151 3926 * 6736 172 57 6 chr15 26957902 26958718 -58737036 + L1PBa LINE L1 1814 2587 -4275 282 56 0 0 chr15 26958718 26958754 -58737000 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6736 172 57 6 chr15 26958754 26960429 -58735325 + L1PBa LINE L1 2587 4429 -2433 * 8426 227 39 18 chr15 26960422 26962609 -58733145 - L1 LINE L1 -1707 4439 2201 2075 134 0 3 chr15 26962609 26962908 -58732846 + AluSx SINE Alu 1 298 -14 8426 227 39 18 chr15 26962908 26962996 -58732758 - L1 LINE L1 -3945 2201 2116 1994 114 0 4 chr15 26962998 26963270 -58732484 + AluSg SINE Alu 1 271 -39 663 211 50 96 chr15 26965093 26965311 -58730443 - MER63A DNA MER1_type -2 208 1 728 116 21 2 chr15 26967221 26967455 -58728299 + AluSx SINE Alu 3 292 -20 23 0 0 0 chr15 26971104 26971127 -58724627 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 26971158 26971186 -58724568 + AT_rich Low_complexity Low_complexity 1 28 0 233 350 136 27 chr15 26971773 26972030 -58723724 + L2 LINE L2 2577 2861 -453 198 351 46 46 chr15 26972152 26972303 -58723451 + MER5A DNA MER1_type 2 152 -37 356 311 33 25 chr15 26972180 26972302 -58723452 - MER5B DNA MER1_type -16 162 40 1974 119 10 29 chr15 26973030 26973340 -58722414 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 26974103 26974125 -58721629 + AT_rich Low_complexity Low_complexity 1 22 0 265 298 228 44 chr15 26974830 26974900 -58720854 - L2 LINE L2 -467 2847 2791 2117 122 10 0 chr15 26974900 26975195 -58720559 - AluSx SINE Alu -14 298 1 265 298 228 44 chr15 26975195 26975352 -58720402 - L2 LINE L2 -523 2791 2578 452 269 0 0 chr15 26975647 26975792 -58719962 + L1P LINE L1 2257 2401 -3745 1894 132 4 0 chr15 26975792 26976122 -58719632 + AluSg SINE Alu 1 331 0 674 229 71 75 chr15 26976944 26977197 -58718557 - MLT1J LTR MaLR -255 256 5 245 303 66 26 chr15 26978052 26978128 -58717626 + L2 LINE L2 3188 3266 -6 511 252 175 0 chr15 26978836 26978979 -58716775 + L3 LINE CR1 1150 1317 -260 1591 147 51 15 chr15 26979219 26979492 -58716262 + MER1B DNA MER1_type 1 283 -56 38 51 0 0 chr15 26980152 26980211 -58715543 + AT_rich Low_complexity Low_complexity 1 59 0 1398 148 0 0 chr15 26980299 26980509 -58715245 + AluSx SINE Alu 4 213 -99 214 178 0 0 chr15 26980791 26980836 -58714918 + T-rich Low_complexity Low_complexity 1 45 0 4347 176 38 14 chr15 26981306 26981368 -58714386 - L1MC2 LINE L1 -6 6338 6279 2440 67 0 3 chr15 26981368 26981666 -58714088 + AluY SINE Alu 1 297 -14 4347 176 38 14 chr15 26981666 26982508 -58713246 - L1MC2 LINE L1 -65 6279 5413 1953 118 33 0 chr15 26982517 26982823 -58712931 - L1PA16 LINE L1 -9 6157 5842 754 130 72 0 chr15 26982823 26983000 -58712754 - L1MC2 LINE L1 -743 5403 5224 2330 118 0 0 chr15 26984191 26984504 -58711250 - AluSq SINE Alu 0 313 1 25 0 0 0 chr15 26985416 26985441 -58710313 + AT_rich Low_complexity Low_complexity 1 25 0 216 324 149 22 chr15 26986013 26986368 -58709386 + L2 LINE L2 1313 1712 -1602 305 301 61 66 chr15 26986374 26986570 -58709184 - L2 LINE L2 -461 2853 2659 950 258 20 0 chr15 26986982 26987226 -58708528 - LTR53 LTR ERVL 0 519 271 460 222 0 9 chr15 26989111 26989219 -58706535 + LTR7 LTR ERV1 342 448 -2 3098 123 22 6 chr15 26989222 26989732 -58706022 + HERVH LTR ERV1 2 519 -7194 1452 113 0 28 chr15 26990991 26991203 -58704551 + AluSx SINE Alu 1 206 -106 1716 148 7 24 chr15 26991447 26991738 -58704016 + AluJo SINE Alu 3 288 -24 260 169 88 0 chr15 26991777 26991855 -58703899 + MIR SINE MIR 58 145 -63 508 180 129 61 chr15 26992794 26992963 -58702791 - MIR SINE MIR -62 146 16 342 0 0 0 chr15 26993144 26993182 -58702572 + (CA)n Simple_repeat Simple_repeat 2 39 0 3704 59 0 0 chr15 26993738 26994215 -58701539 - L1P LINE L1 -1009 5137 4661 477 141 0 0 chr15 26994645 26994723 -58701031 + AluJ/FLAM SINE Alu 1 78 -234 392 167 0 0 chr15 26994724 26994784 -58700970 + AluJ/F(R)AM SINE Alu 147 206 -105 1620 124 0 17 chr15 26994884 26995117 -58700637 - AluSq SINE Alu -84 229 1 2165 186 30 5 chr15 26995118 26995548 -58700206 - L1MC/D LINE L1 -422 5820 5380 246 146 0 18 chr15 26995548 26995603 -58700151 + MER113 DNA MER1_type? 94 147 -374 1545 174 16 0 chr15 26995605 26995858 -58699896 + AluJb SINE Alu 37 293 -19 885 130 6 43 chr15 26995881 26996043 -58699711 + MER5A DNA MER1_type 2 157 -32 945 114 0 0 chr15 26996267 26996398 -58699356 + THE1C LTR MaLR 245 375 0 5870 107 28 94 chr15 26996417 26997443 -58698311 + THE1C-int LTR MaLR 21 979 -601 3495 177 48 5 chr15 26997998 26999252 -58696502 + L1MC1 LINE L1 4516 5826 -507 4541 127 4 29 chr15 26999252 27000048 -58695706 + L1P LINE L1 1 776 -5370 310 125 0 0 chr15 27002335 27002383 -58693371 + L2 LINE L2 3266 3313 0 22 0 0 0 chr15 27002630 27002652 -58693102 + AT_rich Low_complexity Low_complexity 1 22 0 1797 211 43 31 chr15 27003080 27003592 -58692162 - Charlie1b DNA MER1_type -5 518 1 283 331 39 8 chr15 27003604 27003734 -58692020 + MIR3 SINE MIR 72 205 -3 378 308 135 44 chr15 27004035 27004591 -58691163 + L2 LINE L2 2091 2764 -550 414 342 125 44 chr15 27006112 27006767 -58688987 - L2 LINE L2 -8 3264 2550 929 192 22 6 chr15 27006983 27007165 -58688589 + MER5A DNA MER1_type 2 186 -3 274 191 22 114 chr15 27007258 27007365 -58688389 + MIR SINE MIR 46 145 -63 194 344 146 45 chr15 27007465 27008520 -58687234 - L2 LINE L2 -917 2397 1236 877 245 14 19 chr15 27008679 27008891 -58686863 + MIR SINE MIR 2 212 -50 31 0 0 0 chr15 27008897 27008928 -58686826 + AT_rich Low_complexity Low_complexity 1 31 0 365 200 0 0 chr15 27008945 27009005 -58686749 + MIR SINE MIR 199 258 -4 436 272 11 83 chr15 27009672 27009852 -58685902 - MIR SINE MIR -31 231 65 41 36 0 0 chr15 27010087 27010142 -58685612 + AT_rich Low_complexity Low_complexity 1 55 0 327 254 67 85 chr15 27010170 27010394 -58685360 + L1MC4a LINE L1 5827 6046 -1762 569 303 126 60 chr15 27010540 27011368 -58684386 + L1MEd LINE L1 6 887 -5232 749 254 24 91 chr15 27012504 27012843 -58682911 + MER46C DNA MER2_type 23 338 0 405 255 35 35 chr15 27013247 27013388 -58682366 - MIR SINE MIR -3 259 119 304 283 22 66 chr15 27013589 27013815 -58681939 - HAL1 LINE L1 -10 2497 2282 1640 253 115 43 chr15 27014245 27015086 -58680668 - HAL1 LINE L1 -633 1874 973 252 207 17 0 chr15 27015501 27015559 -58680195 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 27015573 27015685 -58680069 - L2 LINE L2 0 3313 3199 647 338 88 21 chr15 27015898 27016229 -58679525 - L2 LINE L2 -3 3269 2917 5007 236 35 14 chr15 27016238 27017875 -58677879 + L1PA15-16 LINE L1 2737 4410 -2439 4971 116 12 5 chr15 27017875 27018626 -58677128 + L1PA16 LINE L1 5410 6165 -1 239 218 0 0 chr15 27018986 27019041 -58676713 + GA-rich Low_complexity Low_complexity 1 55 0 3939 139 8 3 chr15 27019619 27020254 -58675500 + L1PB3 LINE L1 5514 6151 -3 22 0 0 0 chr15 27020255 27020277 -58675477 + AT_rich Low_complexity Low_complexity 1 22 0 1678 78 0 5 chr15 27020693 27020911 -58674843 + AluY SINE Alu 94 310 -1 2734 255 38 25 chr15 27020911 27021920 -58673834 + L1M4c LINE L1 852 1876 -4508 3384 234 158 11 chr15 27022014 27023504 -58672250 + L1M4c LINE L1 2092 3811 -2571 494 255 53 33 chr15 27023691 27024008 -58671746 - L1M1 LINE L1 -4073 3033 2702 * 8528 138 14 14 chr15 27024000 27026580 -58669174 - L1MA2 LINE L1 0 6304 3727 2140 241 104 20 chr15 27026561 27028445 -58667309 - L1M1 LINE L1 -4238 2869 1022 * 1122 162 88 81 chr15 27028465 27028761 -58666993 - L1M1 LINE L1 -6732 298 1 719 171 79 7 chr15 27028791 27028943 -58666811 - L1MC4 LINE L1 -1422 6620 6458 261 163 0 0 chr15 27031090 27031139 -58664615 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 374 310 35 9 chr15 27031498 27031614 -58664140 + L2 LINE L2 3195 3313 0 29 28 0 0 chr15 27031670 27031706 -58664048 + AT_rich Low_complexity Low_complexity 1 36 0 563 175 44 18 chr15 27032035 27032149 -58663605 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr15 27032923 27032943 -58662811 + (A)n Simple_repeat Simple_repeat 1 20 0 258 301 13 77 chr15 27034302 27034458 -58661296 + L2 LINE L2 2915 3060 -212 3116 24 3 0 chr15 27034597 27034966 -58660788 - L1PA4 LINE L1 -4 6151 5782 748 102 7 29 chr15 27035431 27035568 -58660186 + L1MA3 LINE L1 5922 6055 -250 720 180 0 16 chr15 27035568 27035696 -58660058 + FLAM_C SINE Alu 1 126 -17 189 0 0 0 chr15 27035709 27035730 -58660024 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1690 123 69 18 chr15 27035734 27036011 -58659743 + AluSx SINE Alu 1 291 -21 1407 145 15 15 chr15 27036020 27036282 -58659472 + L1MA3 LINE L1 6044 6305 0 561 258 31 0 chr15 27036898 27037026 -58658728 - MER45A DNA AcHobo -38 140 9 3358 110 6 18 chr15 27037029 27037530 -58658224 + LOR1a LTR ERV1 3 497 0 2415 98 86 15 chr15 27037845 27038241 -58657513 + MSTA LTR MaLR 5 428 0 412 232 39 88 chr15 27038367 27038548 -58657206 - L1M4 LINE L1 -2424 3722 3551 637 227 46 31 chr15 27038615 27038828 -58656926 + MLT1B LTR MaLR 1 205 -169 497 126 0 23 chr15 27038848 27038935 -58656819 + MLT1D LTR MaLR 419 503 -2 960 255 0 0 chr15 27039017 27039213 -58656541 + MLT1B LTR MaLR 195 390 0 679 223 66 12 chr15 27039301 27039557 -58656197 - L1M4 LINE L1 -2764 3382 3113 469 305 57 46 chr15 27039590 27040149 -58655605 + HAL1 LINE L1 747 1671 -836 962 195 104 133 chr15 27040149 27040280 -58655474 - MLT1D LTR MaLR -2 503 370 270 0 0 0 chr15 27040280 27040310 -58655444 + (TG)n Simple_repeat Simple_repeat 1 30 0 962 195 104 133 chr15 27040310 27040696 -58655058 - MLT1D LTR MaLR -135 370 1 469 305 57 46 chr15 27040696 27040798 -58654956 + HAL1 LINE L1 1671 1770 -737 873 260 106 54 chr15 27040847 27041367 -58654387 + HAL1 LINE L1 1888 2434 -73 406 259 99 15 chr15 27041429 27041560 -58654194 + MLT1J2 LTR MaLR 67 208 -242 227 191 0 0 chr15 27041682 27041724 -58654030 + MLT1J2 LTR MaLR 386 427 -23 953 242 53 23 chr15 27041741 27042005 -58653749 + MLT1G LTR MaLR 10 281 -309 329 171 77 3 chr15 27042072 27042166 -58653588 + MLT1G3 LTR MaLR 470 549 0 450 208 45 93 chr15 27042336 27042605 -58653149 + MER112 DNA MER1_type 1 256 0 724 204 8 0 chr15 27045933 27046065 -58649689 - FLAM_C SINE Alu 0 133 1 1499 198 61 71 chr15 27048037 27048485 -58647269 - LTR10B LTR ERV1 0 547 16 5786 128 78 20 chr15 27049961 27051044 -58644710 - Tigger3b DNA MER2_type -1 1230 85 1877 65 38 0 chr15 27051349 27051610 -58644144 - L1PA7 LINE L1 0 6154 5884 737 242 58 42 chr15 27052518 27052823 -58642931 + L1ME1 LINE L1 5821 6276 -36 3638 106 19 8 chr15 27053215 27053732 -58642022 + MER1A DNA MER1_type 1 523 -6 21 36 0 0 chr15 27053802 27053830 -58641924 + AT_rich Low_complexity Low_complexity 1 28 0 1915 134 20 7 chr15 27053985 27054291 -58641463 + AluSx SINE Alu 1 310 -2 31 44 0 0 chr15 27054597 27054642 -58641112 + AT_rich Low_complexity Low_complexity 1 45 0 249 98 0 0 chr15 27055536 27055577 -58640177 + (TA)n Simple_repeat Simple_repeat 1 41 0 1693 176 17 3 chr15 27055847 27056137 -58639617 - AluJo SINE Alu -18 294 1 23 78 0 0 chr15 27056152 27056203 -58639551 + AT_rich Low_complexity Low_complexity 1 51 0 337 203 16 0 chr15 27056272 27056336 -58639418 - L2 LINE L2 0 3272 3208 344 276 148 28 chr15 27056440 27056690 -58639064 - L1ME LINE L1 -413 5708 5429 26 64 0 0 chr15 27056815 27056862 -58638892 + AT_rich Low_complexity Low_complexity 1 47 0 419 202 123 136 chr15 27057338 27057540 -58638214 - L1MC4 LINE L1 -3 8039 7839 2074 125 7 0 chr15 27057540 27057837 -58637917 - AluSx SINE Alu -13 299 1 419 202 123 136 chr15 27057837 27057877 -58637877 - L1MC4 LINE L1 -203 7839 7800 1936 112 20 10 chr15 27058000 27058296 -58637458 - AluSx SINE Alu -13 299 1 1052 234 40 99 chr15 27058320 27058825 -58636929 - L1MD2 LINE L1 0 6162 5688 683 241 96 35 chr15 27058831 27059113 -58636641 - L1MC4 LINE L1 -219 7823 7525 1726 224 99 73 chr15 27059285 27060035 -58635719 - L1MD3 LINE L1 -447 7548 6687 323 260 42 21 chr15 27061612 27061708 -58634046 - MIR SINE MIR -49 213 116 1739 185 0 3 chr15 27061782 27062074 -58633680 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr15 27062438 27062459 -58633295 + AT_rich Low_complexity Low_complexity 1 21 0 1221 265 138 11 chr15 27062745 27063391 -58632363 - L1ME3 LINE L1 -290 6266 5549 246 245 22 39 chr15 27063617 27063779 -58631975 - L1ME3 LINE L1 -3928 2612 2452 429 291 85 33 chr15 27064176 27064220 -58631534 - L1MCa LINE L1 -894 1893 1853 201 39 0 0 chr15 27064220 27064246 -58631508 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 429 291 85 33 chr15 27064246 27064634 -58631120 - L1MCa LINE L1 -934 1853 1253 1602 168 10 48 chr15 27065134 27065443 -58630311 + AluJo SINE Alu 1 297 -15 258 105 0 0 chr15 27065791 27065829 -58629925 + (T)n Simple_repeat Simple_repeat 1 38 0 508 269 249 10 chr15 27066576 27066769 -58628985 + MIR SINE MIR 14 252 -10 633 250 42 12 chr15 27066787 27066955 -58628799 + MLT1K LTR MaLR 301 473 -115 1284 267 111 34 chr15 27066970 27067446 -58628308 + LTR33 LTR ERVL 1 513 -8 465 243 101 14 chr15 27067527 27067675 -58628079 - MER103 DNA DNA 0 166 6 368 268 11 20 chr15 27067732 27067844 -58627910 - MIR SINE MIR -70 138 38 206 118 0 0 chr15 27068366 27068400 -58627354 + (T)n Simple_repeat Simple_repeat 1 34 0 319 320 146 22 chr15 27068548 27068726 -58627028 + MLT1H LTR MaLR 240 439 -110 371 314 0 40 chr15 27069421 27069596 -58626158 - MLT2E LTR ERVL 0 628 461 347 230 93 7 chr15 27070319 27070458 -58625296 + HAL1 LINE L1 975 1125 -1382 1789 143 11 11 chr15 27070817 27071104 -58624650 - AluSx SINE Alu -25 287 1 1133 245 212 27 chr15 27071411 27071929 -58623825 + HAL1 LINE L1 1125 1738 -769 2273 113 0 3 chr15 27071958 27072267 -58623487 + AluSx SINE Alu 1 308 -4 1527 246 54 56 chr15 27072301 27073023 -58622731 - L2 LINE L2 0 3313 2494 336 301 64 35 chr15 27073026 27073199 -58622555 + LTR16A LTR ERVL 1 178 -272 402 275 107 0 chr15 27073270 27073401 -58622353 + LTR16A LTR ERVL 301 445 -5 270 234 47 0 chr15 27073427 27073491 -58622263 + HERV16 LTR ERVL 74 140 -4856 1466 343 68 48 chr15 27073726 27075087 -58620667 + ERVL LTR ERVL 3935 5323 -441 368 353 65 0 chr15 27075275 27075428 -58620326 + LTR16A LTR ERVL 1 163 -287 266 256 23 12 chr15 27075511 27075597 -58620157 + MLT1H LTR MaLR 467 553 -2 1329 231 72 24 chr15 27075637 27076013 -58619741 + MLT1D LTR MaLR 69 462 -43 284 272 98 47 chr15 27076106 27076360 -58619394 + MLT1D-int LTR MaLR 322 588 -783 524 254 69 61 chr15 27076808 27077109 -58618645 + MLT1H LTR MaLR 1 335 -260 279 189 0 19 chr15 27077111 27077164 -58618590 - MLT1A2 LTR MaLR 0 374 323 1433 208 22 56 chr15 27077268 27077624 -58618130 - MLT1A2 LTR MaLR 0 374 31 520 249 161 19 chr15 27077638 27077843 -58617911 + MLT1H LTR MaLR 322 555 0 25 65 0 0 chr15 27078879 27078925 -58616829 + AT_rich Low_complexity Low_complexity 1 46 0 441 236 6 28 chr15 27079269 27079451 -58616303 + GA-rich Low_complexity Low_complexity 2 179 0 3048 239 67 14 chr15 27080083 27081112 -58614642 - L1M4 LINE L1 -2090 4056 2973 22 0 0 0 chr15 27081386 27081408 -58614346 + AT_rich Low_complexity Low_complexity 1 22 0 2007 139 14 0 chr15 27081414 27081709 -58614045 + AluSx SINE Alu 6 304 -8 23 54 0 0 chr15 27082224 27082261 -58613493 + AT_rich Low_complexity Low_complexity 1 37 0 270 224 0 0 chr15 27082590 27082639 -58613115 - L2 LINE L2 0 3313 3265 4223 228 85 47 chr15 27082672 27082700 -58613054 - L1M4 LINE L1 -1780 4366 4341 2400 158 30 2 chr15 27082700 27083106 -58612648 - MER47B DNA MER2_type 0 418 2 4223 228 85 47 chr15 27083106 27084777 -58610977 - L1M4 LINE L1 -1805 4341 2603 21 0 0 0 chr15 27085074 27085095 -58610659 + AT_rich Low_complexity Low_complexity 1 21 0 387 353 101 55 chr15 27086499 27086935 -58608819 + L2 LINE L2 2807 3262 -10 956 196 48 0 chr15 27087989 27088198 -58607556 + L1ME3A LINE L1 5944 6162 -8 259 292 76 69 chr15 27088533 27088595 -58607159 - MIR3 SINE MIR -28 180 120 4696 80 26 0 chr15 27088595 27089236 -58606518 - L1PA13 LINE L1 -3 6160 5503 259 292 76 69 chr15 27089236 27089317 -58606437 - MIR3 SINE MIR -88 120 36 597 144 12 138 chr15 27089677 27089837 -58605917 + MER97a DNA MER1_type? 1 140 -754 682 219 124 39 chr15 27091345 27091578 -58604176 + L1ME2 LINE L1 5902 6154 -10 196 29 0 57 chr15 27093522 27093557 -58602197 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 282 284 126 21 chr15 27093882 27093977 -58601777 + MIR3 SINE MIR 83 187 -21 1262 283 88 54 chr15 27094042 27094785 -58600969 + HAL1 LINE L1 1664 2431 -76 21 36 0 0 chr15 27094904 27094932 -58600822 + AT_rich Low_complexity Low_complexity 1 28 0 452 121 141 30 chr15 27095231 27095330 -58600424 + MER53 DNA DNA 2 111 -78 195 244 0 0 chr15 27099617 27099658 -58596096 - L2 LINE L2 -217 3055 3015 1665 164 29 25 chr15 27099660 27099960 -58595794 - AluJb SINE Alu 0 301 1 639 333 81 55 chr15 27100517 27101060 -58594694 - L2 LINE L2 -490 2824 2268 297 290 8 69 chr15 27102338 27102469 -58593285 + L2 LINE L2 2325 2447 -867 858 267 27 35 chr15 27102500 27102758 -58592996 + MIR SINE MIR 2 257 -5 6297 136 13 7 chr15 27103541 27105022 -58590732 + L1MA4A LINE L1 4802 6292 -11 537 293 136 5 chr15 27107245 27107443 -58588311 + MIR SINE MIR 2 225 -37 249 139 0 0 chr15 27107456 27107499 -58588255 + (CA)n Simple_repeat Simple_repeat 2 44 0 382 195 39 0 chr15 27107499 27107576 -58588178 - MER82 DNA MER2_type -4 649 570 594 283 85 6 chr15 27107602 27107779 -58587975 + MIR3 SINE MIR 8 198 -10 479 257 11 57 chr15 27108372 27108531 -58587223 - LTR33A LTR ERVL -24 499 347 1114 180 6 80 chr15 27108531 27108799 -58586955 + MER33 DNA MER1_type 1 239 -2346 2102 129 3 0 chr15 27108799 27109094 -58586660 - AluSx SINE Alu -16 296 1 1114 180 6 80 chr15 27109094 27109175 -58586579 + MER33 DNA MER1_type 239 324 0 479 257 11 57 chr15 27109175 27109190 -58586564 - LTR33A LTR ERVL -176 347 333 219 359 134 47 chr15 27109780 27110100 -58585654 - L2 LINE L2 -6 3266 2919 336 257 177 0 chr15 27110319 27110432 -58585322 + L2 LINE L2 3140 3272 0 415 304 0 0 chr15 27111145 27111260 -58584494 + MIR SINE MIR 140 254 -8 2334 74 0 0 chr15 27112280 27112603 -58583151 + AluY SINE Alu 1 323 0 2984 262 71 38 chr15 27113039 27113566 -58582188 - L2 LINE L2 -149 3164 2656 2235 117 7 0 chr15 27113566 27113865 -58581889 - AluSx SINE Alu -11 301 1 2984 262 71 38 chr15 27113865 27114533 -58581221 - L2 LINE L2 -657 2656 1925 219 323 55 51 chr15 27115260 27115477 -58580277 - L2 LINE L2 -967 2347 2130 504 157 0 0 chr15 27116795 27116878 -58578876 - FLAM_A SINE Alu -13 129 47 880 297 135 14 chr15 27118123 27118470 -58577284 - MLT1J2 LTR MaLR 0 450 62 6520 122 56 0 chr15 27119028 27120090 -58575664 + Tigger3b DNA MER2_type 21 1141 -90 857 136 21 0 chr15 27120097 27120237 -58575517 + Tigger3b DNA MER2_type 277 419 -812 598 175 31 0 chr15 27120237 27120334 -58575420 + Tigger3b DNA MER2_type 1132 1231 0 2925 75 90 2 chr15 27121022 27121434 -58574320 - LTR7 LTR ERV1 -2 448 1 7704 94 26 4 chr15 27121434 27123158 -58572596 - HERVH LTR ERV1 0 7713 5769 1236 126 16 0 chr15 27123144 27123334 -58572420 - HERVH LTR ERV1 -3033 4680 4488 * 3338 117 4 6 chr15 27123336 27123839 -58571915 - HERVH LTR ERV1 -3720 3993 3492 970 133 7 0 chr15 27123829 27123979 -58571775 - HERVH LTR ERV1 -4423 3290 3140 * 15694 104 16 26 chr15 27123958 27126847 -58568907 - HERVH LTR ERV1 -4718 2995 1 2939 73 90 2 chr15 27126849 27127261 -58568493 - LTR7 LTR ERV1 -2 448 1 836 280 156 24 chr15 27127529 27128339 -58567415 - L1ME LINE L1 -393 6731 5751 327 104 0 0 chr15 27128339 27128387 -58567367 + (TA)n Simple_repeat Simple_repeat 1 48 0 836 280 156 24 chr15 27128387 27128595 -58567159 - L1ME LINE L1 -1373 5751 5572 5096 117 10 9 chr15 27130156 27131474 -58564280 - L1PA14 LINE L1 -190 5971 4655 2332 247 57 29 chr15 27131463 27133489 -58562265 - L1ME LINE L1 -4070 3038 1285 * 269 213 16 16 chr15 27133489 27133550 -58562204 + L2 LINE L2 2701 2761 -553 288 130 0 0 chr15 27133550 27133596 -58562158 + (TC)n Simple_repeat Simple_repeat 1 46 0 501 343 68 13 chr15 27133676 27133912 -58561842 + L2 LINE L2 2853 3101 -212 413 236 27 27 chr15 27134509 27134619 -58561135 + L2 LINE L2 3163 3272 0 199 268 0 0 chr15 27135247 27135288 -58560466 - MIR3 SINE MIR -10 198 158 251 338 58 7 chr15 27135413 27135552 -58560202 - MIR3 SINE MIR -56 152 7 2058 82 28 0 chr15 27136189 27136507 -58559247 - L1PA7 LINE L1 -752 5394 5068 1336 42 0 0 chr15 27136505 27136672 -58559082 + L1PA7 LINE L1 5395 5561 -593 * 2084 60 11 0 chr15 27136672 27136939 -58558815 + L1PA7 LINE L1 5884 6154 0 1047 267 166 52 chr15 27136952 27137506 -58558248 - MLT1E1 LTR MaLR -36 618 1 216 337 84 11 chr15 27137520 27137615 -58558139 - MIR SINE MIR -152 110 9 295 362 63 30 chr15 27138022 27138290 -58557464 - L2 LINE L2 -565 2749 2473 595 274 98 0 chr15 27138516 27138669 -58557085 + MER5A DNA MER1_type 22 189 0 212 281 8 15 chr15 27139321 27139388 -58556366 + MIR SINE MIR 102 168 -57 238 255 0 0 chr15 27141092 27141143 -58554611 - MIR3 SINE MIR -7 201 151 2256 192 31 41 chr15 27141170 27141681 -58554073 - MER74A LTR ERVL 0 558 53 2422 65 3 0 chr15 27141796 27142103 -58553651 - AluY SINE Alu -3 308 1 818 162 33 17 chr15 27143932 27144146 -58551608 + MLT1D LTR MaLR 1 168 -337 2958 206 109 16 chr15 27144459 27145393 -58550361 - Charlie1 DNA MER1_type -4 2757 1737 353 276 73 0 chr15 27145739 27145862 -58549892 + MIR SINE MIR 131 262 0 258 32 0 0 chr15 27146270 27146301 -58549453 + (CA)n Simple_repeat Simple_repeat 2 32 0 352 333 42 50 chr15 27146872 27147112 -58548642 + MIR SINE MIR 20 257 -5 1725 269 22 50 chr15 27147137 27147833 -58547921 + L1M2a LINE L1 49 724 -6485 4478 223 29 12 chr15 27148142 27149400 -58546354 + L1M2a LINE L1 1750 3049 -4160 2496 101 31 3 chr15 27149486 27149872 -58545882 + L1PA11 LINE L1 5693 6089 -85 1925 148 40 28 chr15 27149876 27150228 -58545526 + THE1B LTR MaLR 7 362 -2 536 56 14 0 chr15 27150228 27150299 -58545455 + L1PA10 LINE L1 6081 6152 -16 214 254 0 17 chr15 27150468 27150527 -58545227 + L2 LINE L2 3161 3218 -95 809 234 61 17 chr15 27150890 27151301 -58544453 + L1M1 LINE L1 3163 3602 -3963 5534 195 68 7 chr15 27151372 27152256 -58543498 + L1M1 LINE L1 3620 4632 -2933 1498 199 3 62 chr15 27152256 27152577 -58543177 + AluJo SINE Alu 1 302 -10 5534 195 68 7 chr15 27152577 27153188 -58542566 + L1M1 LINE L1 4632 5205 -2360 413 303 17 52 chr15 27153194 27153484 -58542270 + L1PA16 LINE L1 2 281 -7300 1563 148 31 34 chr15 27154240 27154565 -58541189 - THE1C LTR MaLR 0 375 52 1926 157 77 32 chr15 27154565 27155004 -58540750 - LTR2B LTR ERV1 0 490 32 382 136 0 0 chr15 27155014 27155080 -58540674 - THE1C LTR MaLR -362 66 1 9378 118 46 13 chr15 27155080 27156303 -58539451 - THE1C-int LTR MaLR 0 1580 296 850 135 142 176 chr15 27156303 27156769 -58538985 - LTR7 LTR ERV1 0 450 1 9378 118 46 13 chr15 27156769 27157075 -58538679 - THE1C-int LTR MaLR -1284 296 1 1834 168 21 24 chr15 27157075 27157451 -58538303 - THE1C LTR MaLR 0 375 1 13846 213 16 17 chr15 27158011 27160490 -58535264 + L1PA16 LINE L1 2319 4800 -2804 216 0 0 0 chr15 27160490 27160514 -58535240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13846 213 16 17 chr15 27160514 27163292 -58532462 + L1PA16 LINE L1 4800 7604 0 2696 150 28 4 chr15 27163292 27163793 -58531961 + L1MA6 LINE L1 5769 6288 -12 8839 193 18 5 chr15 27163851 27165542 -58530212 + L1MA3 LINE L1 13 1725 -5840 1089 84 19 47 chr15 27165539 27165752 -58530002 + L1MA3 LINE L1 3366 3572 -3993 * 12934 163 23 9 chr15 27165757 27168421 -58527333 + L1MA3 LINE L1 4027 6758 -966 2270 128 0 0 chr15 27168421 27168726 -58527028 - AluSq SINE Alu -8 305 1 12934 163 23 9 chr15 27168726 27169366 -58526388 + L1MA3 LINE L1 6758 7388 -336 216 313 188 0 chr15 27169460 27169556 -58526198 + L2 LINE L2 3180 3293 -20 190 310 56 0 chr15 27169597 27169668 -58526086 - MIR SINE MIR -3 259 185 1878 276 106 30 chr15 27169685 27170717 -58525037 - L2 LINE L2 0 3313 2187 697 178 8 16 chr15 27170806 27170935 -58524819 - FLAM_C SINE Alu -5 128 1 23 0 0 0 chr15 27170940 27170963 -58524791 + AT_rich Low_complexity Low_complexity 1 23 0 697 321 58 18 chr15 27171021 27171295 -58524459 - L2 LINE L2 -1108 2206 1922 395 331 24 0 chr15 27171326 27171453 -58524301 - MIR SINE MIR -113 149 20 478 328 53 12 chr15 27171467 27171638 -58524116 + MER91A DNA MER1_type 14 191 -5 368 308 19 0 chr15 27171697 27171801 -58523953 + MER5B DNA MER1_type 2 107 -71 297 268 63 31 chr15 27172586 27172713 -58523041 - MIR3 SINE MIR -47 161 31 211 325 171 0 chr15 27172781 27172904 -58522850 - MER5B DNA MER1_type -30 148 5 2641 218 19 55 chr15 27178964 27179707 -58516047 + L1MB7 LINE L1 310 1025 -5814 3547 204 28 10 chr15 27179707 27181076 -58514678 + L1MB7 LINE L1 5525 6963 -16 236 358 97 55 chr15 27181101 27181431 -58514323 - L2 LINE L2 -15 3257 2914 44 75 0 0 chr15 27182028 27182121 -58513633 + AT_rich Low_complexity Low_complexity 1 93 0 957 280 90 38 chr15 27183145 27184323 -58511431 + L1M4 LINE L1 1306 2781 -4341 10707 202 45 46 chr15 27184523 27184769 -58510985 - L1MB1 LINE L1 -115 6257 6012 345 47 0 0 chr15 27184769 27184812 -58510942 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 74 0 0 chr15 27184813 27184840 -58510914 + (TA)n Simple_repeat Simple_repeat 2 28 0 10707 202 45 46 chr15 27184840 27185765 -58509989 - L1MB1 LINE L1 -360 6012 5088 2590 174 65 6 chr15 27185765 27186254 -58509500 + MLT2B1 LTR ERVL 1 518 -2 10707 202 45 46 chr15 27186254 27186482 -58509272 - L1MB1 LINE L1 -1284 5088 4861 2731 148 18 12 chr15 27186482 27186982 -58508772 - L1PA15 LINE L1 -9 6156 5654 10707 202 45 46 chr15 27186982 27189251 -58506503 - L1MB1 LINE L1 -1511 4861 2594 1431 234 62 31 chr15 27189248 27189798 -58505956 - L1MB1 LINE L1 -4523 1748 1157 * 529 291 136 48 chr15 27189814 27190109 -58505645 - L1MB1 LINE L1 -5920 361 1 438 279 84 13 chr15 27192390 27192544 -58503210 + MIR SINE MIR 86 250 -12 201 226 0 0 chr15 27192940 27192993 -58502761 + (CA)n Simple_repeat Simple_repeat 2 54 0 375 296 122 15 chr15 27193050 27193246 -58502508 + MIR SINE MIR 15 231 -31 1020 80 0 0 chr15 27193250 27193387 -58502367 - AluY SINE Alu 0 311 175 25 31 0 0 chr15 27193424 27193456 -58502298 + AT_rich Low_complexity Low_complexity 1 32 0 329 275 72 0 chr15 27193590 27193728 -58502026 + L1ME4a LINE L1 5971 6118 -3 345 109 0 0 chr15 27193890 27193945 -58501809 + (TC)n Simple_repeat Simple_repeat 2 56 0 665 176 7 0 chr15 27194359 27194501 -58501253 - Charlie5 DNA MER1_type 0 2624 2482 435 167 0 0 chr15 27194512 27194578 -58501176 - Charlie5 DNA MER1_type -2545 67 2 216 130 43 0 chr15 27194622 27194691 -58501063 + (TA)n Simple_repeat Simple_repeat 2 73 0 236 320 17 61 chr15 27194691 27194872 -58500882 - L1ME LINE L1 -383 5787 5615 557 212 143 44 chr15 27195037 27195240 -58500514 + MIR SINE MIR 40 262 0 234 302 138 31 chr15 27195349 27195508 -58500246 - MIR3 SINE MIR 0 208 33 558 251 49 34 chr15 27195908 27196171 -58499583 - L1ME LINE L1 -5245 825 559 2236 113 3 0 chr15 27196193 27196486 -58499268 - AluSx SINE Alu -18 294 1 524 221 30 23 chr15 27196507 27196638 -58499116 + MIR SINE MIR 87 218 -44 1501 191 48 0 chr15 27196820 27197092 -58498662 - AluJb SINE Alu -21 291 7 1189 158 0 0 chr15 27197436 27197607 -58498147 + AluSg/x SINE Alu 109 279 -33 369 0 0 0 chr15 27197607 27197648 -58498106 + (CA)n Simple_repeat Simple_repeat 1 41 0 809 288 122 35 chr15 27197649 27198281 -58497473 + L2 LINE L2 2531 3222 -91 805 295 95 16 chr15 27198281 27198711 -58497043 - LTR16B LTR ERVL 0 464 1 809 288 122 35 chr15 27198711 27198812 -58496942 + L2 LINE L2 3222 3313 0 245 284 110 29 chr15 27198806 27198928 -58496826 - MIR3 SINE MIR -109 99 4 * 2207 100 10 0 chr15 27199246 27199535 -58496219 - AluSq SINE Alu -21 292 1 188 333 0 0 chr15 27200411 27200459 -58495295 + MER5B DNA MER1_type 54 101 -77 2310 164 11 34 chr15 27200482 27200927 -58494827 - L1MC1 LINE L1 -85 6248 5814 243 164 0 0 chr15 27200927 27200988 -58494766 + T-rich Low_complexity Low_complexity 1 61 0 42535 35 24 0 chr15 27201033 27207042 -58488712 - L1PA2 LINE L1 0 6155 1 6499 199 44 8 chr15 27207042 27209098 -58486656 - L1MC1 LINE L1 -507 5826 3695 2230 251 42 27 chr15 27209116 27209781 -58485973 - L1ME1 LINE L1 -4 6231 5557 * 5131 236 60 36 chr15 27209767 27212463 -58483291 - L1ME1 LINE L1 -2339 3876 1246 186 43 0 0 chr15 27212463 27212486 -58483268 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3738 41 0 13 chr15 27212496 27212960 -58482794 - L1PA4 LINE L1 0 6155 5698 5131 236 60 36 chr15 27212960 27213490 -58482264 - L1ME1 LINE L1 -4977 1238 615 528 215 8 23 chr15 27213494 27213624 -58482130 - L1ME1 LINE L1 -5842 554 427 427 117 0 0 chr15 27214285 27214345 -58481409 + FLAM_A SINE Alu 41 100 -42 1157 301 100 19 chr15 27214367 27214935 -58480819 + HAL1 LINE L1 403 1016 -1491 546 254 119 53 chr15 27215527 27215778 -58479976 + HAL1 LINE L1 1012 1245 -1262 1864 165 3 10 chr15 27215778 27216081 -58479673 - AluJo SINE Alu -9 303 3 546 254 119 53 chr15 27216081 27216360 -58479394 + HAL1 LINE L1 1245 1577 -930 281 232 24 61 chr15 27216420 27216502 -58479252 + HAL1 LINE L1 1695 1773 -734 231 294 0 0 chr15 27218150 27218218 -58477536 + (TTCGGG)n Simple_repeat Simple_repeat 6 73 0 7719 14 8 0 chr15 27219381 27220370 -58475384 - L1PA3 LINE L1 0 6155 5163 22 0 0 0 chr15 27221639 27221661 -58474093 + AT_rich Low_complexity Low_complexity 1 22 0 732 270 87 44 chr15 27221891 27222372 -58473382 + HAL1 LINE L1 2006 2507 0 1756 244 53 62 chr15 27222515 27223063 -58472691 - MLT1H LTR MaLR 0 549 7 368 217 42 83 chr15 27223521 27223665 -58472089 + L1MD2 LINE L1 6006 6142 -24 2472 49 3 7 chr15 27225058 27225365 -58470389 - AluY SINE Alu -2 309 4 450 282 67 7 chr15 27225629 27225778 -58469976 + MER69A DNA AcHobo 20 177 0 2244 137 39 20 chr15 27225912 27226269 -58469485 - THE1B LTR MaLR 0 364 1 10496 88 93 1 chr15 27226269 27227715 -58468039 - THE1B-int LTR MaLR 0 1580 1 2010 142 60 31 chr15 27227715 27228067 -58467687 - THE1B LTR MaLR 0 364 3 2016 140 7 0 chr15 27228468 27228754 -58467000 - AluSx SINE Alu -24 288 1 356 261 217 25 chr15 27229170 27229373 -58466381 + MIR SINE MIR 20 261 -1 372 315 37 0 chr15 27229964 27230072 -58465682 - MIR3 SINE MIR -21 187 76 22 35 0 0 chr15 27230344 27230373 -58465381 + AT_rich Low_complexity Low_complexity 1 29 0 1039 165 63 44 chr15 27230846 27231052 -58464702 - MER63A DNA MER1_type 0 210 1 914 280 27 27 chr15 27231619 27231948 -58463806 - MARNA DNA Mariner -149 437 109 332 225 27 128 chr15 27231867 27232054 -58463700 + MARNA DNA Mariner 396 563 -23 * 415 319 118 0 chr15 27232074 27232209 -58463545 - MIR SINE MIR -11 251 101 356 288 8 96 chr15 27232777 27232902 -58462852 + MER5B DNA MER1_type 65 178 0 466 254 0 9 chr15 27233189 27233299 -58462455 + MIR SINE MIR 63 171 -91 303 233 92 36 chr15 27233485 27233733 -58462021 + L1ME LINE L1 5539 5804 -317 236 239 0 30 chr15 27233937 27234004 -58461750 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 381 262 159 58 chr15 27234083 27234598 -58461156 - L1MC4a LINE L1 -1926 5882 5316 288 325 20 33 chr15 27234845 27235050 -58460704 - MIR SINE MIR -6 256 3 336 238 0 0 chr15 27235072 27235156 -58460598 + CT-rich Low_complexity Low_complexity 2 85 0 615 235 108 36 chr15 27236430 27236596 -58459158 + MER45A DNA AcHobo 1 178 0 324 339 28 0 chr15 27237821 27237957 -58457797 + MIR SINE MIR 5 151 -62 673 205 0 16 chr15 27238143 27238270 -58457484 + MER5B DNA MER1_type 44 168 -10 184 328 0 31 chr15 27238362 27238426 -58457328 + L2 LINE L2 3242 3303 -10 535 244 71 41 chr15 27239054 27239251 -58456503 - MIR SINE MIR -40 222 20 395 211 0 0 chr15 27239450 27239526 -58456228 + MER5A DNA MER1_type 34 109 -80 431 270 27 40 chr15 27239617 27239765 -58455989 - MER5A DNA MER1_type -1 188 43 229 217 155 12 chr15 27240237 27240352 -58455402 - MIR SINE MIR -47 215 31 311 335 168 0 chr15 27240647 27240814 -58454940 + MIR SINE MIR 51 245 -17 383 208 20 0 chr15 27240927 27241009 -58454745 + L1 LINE L1 3060 3147 -2999 4646 132 63 4 chr15 27241012 27241831 -58453923 + L1PA16 LINE L1 5290 6157 -9 407 277 61 0 chr15 27242186 27242334 -58453420 - L1MC4 LINE L1 -525 7517 7361 3499 249 67 67 chr15 27242340 27243849 -58451905 - L1MC4 LINE L1 -11 8031 6524 252 0 0 0 chr15 27243849 27243877 -58451877 + (TG)n Simple_repeat Simple_repeat 1 28 0 3499 249 67 67 chr15 27243877 27243955 -58451799 - L1MC4 LINE L1 -1518 6524 6448 3173 113 48 4 chr15 27243955 27244457 -58451297 - L1PB1 LINE L1 -3 6148 5625 3499 249 67 67 chr15 27244457 27245537 -58450217 - L1MC4 LINE L1 -1594 6448 5263 198 0 0 0 chr15 27245610 27245632 -58450122 + (T)n Simple_repeat Simple_repeat 1 22 0 661 180 66 38 chr15 27245839 27246022 -58449732 + MER53 DNA DNA 1 188 -1 185 200 0 0 chr15 27246524 27246559 -58449195 - MIR SINE MIR -114 148 114 388 291 16 59 chr15 27247014 27247195 -58448559 - MIR SINE MIR -63 145 19 210 37 0 0 chr15 27247371 27247398 -58448356 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1702 151 25 50 chr15 27247953 27248311 -58447443 + MLT1A1 LTR MaLR 16 364 -1 3400 128 7 14 chr15 27248334 27248671 -58447083 - Tigger1 DNA MER2_type 0 2418 2080 378 0 0 0 chr15 27248671 27248713 -58447041 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2313 57 3 14 chr15 27248713 27249010 -58446744 - L1PA6 LINE L1 -18 6136 5843 3400 128 7 14 chr15 27249010 27249227 -58446527 - Tigger1 DNA MER2_type -336 2082 1867 862 160 0 0 chr15 27249358 27249502 -58446252 - Tigger1 DNA MER2_type -963 1455 1312 * 1145 148 0 54 chr15 27249501 27249724 -58446030 - Tigger1 DNA MER2_type -2206 212 2 1108 249 84 53 chr15 27250187 27250604 -58445150 + MLT1E LTR MaLR 1 430 -163 1239 191 4 4 chr15 27250746 27250981 -58444773 - MLT1A1 LTR MaLR -121 244 10 289 226 169 24 chr15 27250991 27251115 -58444639 + MLT1E LTR MaLR 480 621 -3 476 276 102 123 chr15 27251445 27251916 -58443838 - L2 LINE L2 -2 3270 2810 686 279 97 13 chr15 27253115 27253352 -58442402 - MIR SINE MIR 0 262 6 26 50 0 0 chr15 27253413 27253453 -58442301 + AT_rich Low_complexity Low_complexity 1 40 0 210 313 16 0 chr15 27254230 27254294 -58441460 - MIR SINE MIR -1 261 197 1087 274 4 0 chr15 27254313 27254558 -58441196 - MIR SINE MIR -12 250 5 221 346 77 13 chr15 27254564 27254720 -58441034 - MIR SINE MIR -77 185 20 2213 180 11 28 chr15 27254737 27255203 -58440551 + LTR22A LTR ERVK 1 458 0 2114 98 65 0 chr15 27255205 27255530 -58440224 + HERVK22 LTR ERVK 3 348 -6489 24549 43 0 0 chr15 27255530 27259340 -58436414 - L1PA4 LINE L1 0 6155 2346 9491 104 6 1 chr15 27259488 27260912 -58434842 - L1PA4 LINE L1 -4715 1431 1 35850 98 6 5 chr15 27260915 27266028 -58429726 + HERVK22 LTR ERVK 341 5458 -1379 1412 188 3 24 chr15 27266030 27266323 -58429431 + LTR22A LTR ERVK 172 458 0 424 269 96 12 chr15 27267361 27267528 -58428226 - MIR3 SINE MIR -10 198 18 504 287 72 12 chr15 27267598 27267765 -58427989 - MER5B DNA MER1_type 0 178 2 333 181 0 14 chr15 27267778 27267850 -58427904 + L1MC1 LINE L1 6254 6324 -9 2201 105 3 3 chr15 27267853 27268147 -58427607 + AluSg SINE Alu 3 296 -14 464 288 111 10 chr15 27268550 27268748 -58427006 - MIR SINE MIR -13 249 32 220 265 188 34 chr15 27268831 27268994 -58426760 - MIR SINE MIR -55 207 14 308 331 84 14 chr15 27269990 27270132 -58425622 - L2 LINE L2 0 3272 3121 183 167 0 0 chr15 27270896 27270938 -58424816 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chr15 27271013 27271045 -58424709 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 27271062 27271084 -58424670 + AT_rich Low_complexity Low_complexity 1 22 0 3599 187 5 17 chr15 27271437 27272244 -58423510 + L1 LINE L1 4126 4922 -1224 360 158 26 0 chr15 27272250 27272326 -58423428 - L1P LINE L1 -967 5179 5102 5537 111 41 3 chr15 27272345 27273551 -58422203 + L1PA16 LINE L1 4927 6166 0 793 223 104 23 chr15 27273587 27273807 -58421947 + MIR SINE MIR 6 243 -19 195 235 143 31 chr15 27273798 27273896 -58421858 - MIR SINE MIR -76 186 78 * 618 341 59 7 chr15 27274434 27274707 -58421047 + L3 LINE CR1 1237 1523 -54 1788 107 97 13 chr15 27275549 27275857 -58419897 + MSTB LTR MaLR 1 334 -92 421 234 13 45 chr15 27275924 27276078 -58419676 + MER104 DNA Tc2 32 180 0 43 35 0 0 chr15 27276419 27276476 -58419278 + AT_rich Low_complexity Low_complexity 1 57 0 225 0 0 0 chr15 27278668 27278693 -58417061 + (TC)n Simple_repeat Simple_repeat 2 26 0 365 340 27 0 chr15 27278793 27278940 -58416814 - MIR3 SINE MIR -29 179 29 209 180 0 33 chr15 27279119 27279180 -58416574 + CT-rich Low_complexity Low_complexity 1 59 0 186 306 28 14 chr15 27279930 27280002 -58415752 - MIR SINE MIR -9 253 181 414 238 53 116 chr15 27280009 27280370 -58415384 + LTR37B LTR ERV1 8 345 -123 463 252 49 0 chr15 27280473 27280596 -58415158 - MIR SINE MIR -77 185 57 23 54 0 0 chr15 27280779 27280816 -58414938 + AT_rich Low_complexity Low_complexity 1 37 0 417 177 0 0 chr15 27282972 27283051 -58412703 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 1761 156 10 17 chr15 27284007 27284302 -58411452 - AluY SINE Alu -18 293 1 233 277 116 18 chr15 27286188 27286300 -58409454 - L3 LINE CR1 -2 1575 1453 463 250 44 15 chr15 27286324 27286460 -58409294 - MIR SINE MIR -10 252 113 4107 188 40 23 chr15 27286460 27287299 -58408455 + MER21B LTR ERV1 1 854 -9 357 231 48 29 chr15 27287313 27287417 -58408337 - MIR SINE MIR -144 118 13 264 279 39 31 chr15 27289559 27289688 -58406066 + HAL1 LINE L1 1217 1346 -1161 246 282 99 28 chr15 27289826 27290078 -58405676 + HAL1b LINE L1 450 719 -629 1171 126 73 15 chr15 27290471 27290677 -58405077 - AluSp SINE Alu -14 299 82 1681 160 45 10 chr15 27291059 27291347 -58404407 - AluSx SINE Alu -14 298 1 261 284 0 14 chr15 27292002 27292076 -58403678 + L1MC4a LINE L1 5555 5627 -2181 568 273 99 21 chr15 27292134 27292416 -58403338 + L1MC4a LINE L1 5619 5922 -1886 21 71 0 0 chr15 27292569 27292611 -58403143 + AT_rich Low_complexity Low_complexity 1 42 0 410 255 130 37 chr15 27293214 27293375 -58402379 + MIR SINE MIR 22 197 -65 442 252 152 7 chr15 27293498 27293649 -58402105 + MIR SINE MIR 30 202 -60 270 291 39 48 chr15 27294324 27294427 -58401327 + MIR SINE MIR 21 122 -86 563 237 0 0 chr15 27294464 27294582 -58401172 + MLT1F1 LTR MaLR 8 125 -442 2711 150 27 45 chr15 27294582 27295183 -58400571 + L1MD3 LINE L1 7404 7993 -2 22 0 0 0 chr15 27295243 27295265 -58400489 + AT_rich Low_complexity Low_complexity 1 22 0 826 285 49 19 chr15 27295326 27295695 -58400059 + L1ME3A LINE L1 5548 5927 -194 613 252 183 62 chr15 27296191 27296611 -58399143 - L2 LINE L2 0 3313 2843 247 250 0 0 chr15 27297216 27297268 -58398486 + (CA)n Simple_repeat Simple_repeat 1 52 0 529 252 17 0 chr15 27297695 27297814 -58397940 + FLAM_A SINE Alu 6 126 -16 417 256 88 50 chr15 27298795 27298955 -58396799 - MIR SINE MIR -65 197 32 307 176 118 0 chr15 27299379 27299447 -58396307 - MER5A DNA MER1_type -77 112 37 494 291 79 31 chr15 27299726 27299953 -58395801 + MIR SINE MIR 16 253 -9 25 31 0 0 chr15 27299963 27299995 -58395759 + AT_rich Low_complexity Low_complexity 1 32 0 358 340 80 6 chr15 27300020 27300182 -58395572 + MIR3 SINE MIR 33 206 -2 365 180 45 27 chr15 27301186 27301297 -58394457 + MER103 DNA DNA 10 122 -44 312 354 80 19 chr15 27301686 27301898 -58393856 + MIR SINE MIR 14 238 -24 1789 157 107 25 chr15 27303126 27303177 -58392577 + MER63B DNA MER1_type 1 46 -1016 2324 78 0 0 chr15 27303177 27303486 -58392268 + AluY SINE Alu 1 309 0 1789 157 107 25 chr15 27303486 27303834 -58391920 + MER63B DNA MER1_type 46 434 -2 606 276 75 22 chr15 27304718 27305037 -58390717 + L1ME3A LINE L1 5627 5962 -208 250 246 125 69 chr15 27305058 27305290 -58390464 + L1ME3A LINE L1 5926 6170 0 739 237 0 0 chr15 27305342 27305481 -58390273 + MER5B DNA MER1_type 38 176 -2 650 251 87 6 chr15 27305847 27306030 -58389724 - MIR SINE MIR 0 262 65 726 33 0 0 chr15 27306033 27306123 -58389631 + L1MA1 LINE L1 6204 6293 -9 26 0 0 0 chr15 27306123 27306149 -58389605 + AT_rich Low_complexity Low_complexity 1 26 0 873 167 151 21 chr15 27306185 27306424 -58389330 + Charlie1b DNA MER1_type 45 314 -209 1954 151 6 10 chr15 27306666 27306977 -58388777 + AluSx SINE Alu 1 310 -2 1423 139 204 0 chr15 27307066 27307346 -58388408 + MER1B DNA MER1_type 1 337 0 790 264 136 45 chr15 27307378 27307878 -58387876 + L2 LINE L2 2734 3306 -7 267 298 97 48 chr15 27307937 27308165 -58387589 + L2 LINE L2 2283 2521 -793 399 248 186 0 chr15 27308580 27308725 -58387029 + MIR SINE MIR 79 250 -12 2322 101 3 0 chr15 27309157 27309455 -58386299 - AluSq SINE Alu -14 299 1 331 251 150 12 chr15 27311526 27311693 -58384061 + MIR3 SINE MIR 11 200 -8 264 347 32 16 chr15 27312426 27312550 -58383204 + L2 LINE L2 3141 3266 -6 2082 134 0 0 chr15 27313662 27313972 -58381782 - AluSx SINE Alu 0 310 1 2123 121 3 7 chr15 27314180 27314477 -58381277 + AluSc SINE Alu 1 296 -13 318 333 95 32 chr15 27315151 27315340 -58380414 + L1MEd LINE L1 316 516 -5603 2528 147 28 2 chr15 27315721 27316158 -58379596 + L1MB2 LINE L1 5719 6166 -5 380 259 45 0 chr15 27316171 27316283 -58379471 + MIR SINE MIR 146 262 0 199 267 0 0 chr15 27316599 27316644 -58379110 + L2 LINE L2 3268 3312 -1 460 171 0 12 chr15 27317871 27317953 -58377801 + MER5A DNA MER1_type 109 189 0 24 32 0 0 chr15 27319179 27319210 -58376544 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr15 27319801 27319828 -58375926 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 305 282 145 0 chr15 27320182 27320313 -58375441 - MIR SINE MIR -56 206 57 340 317 139 57 chr15 27321598 27322024 -58373730 + L2 LINE L2 2780 3272 0 22 0 0 0 chr15 27324294 27324316 -58371438 + AT_rich Low_complexity Low_complexity 1 22 0 2304 94 3 3 chr15 27326405 27326703 -58369051 + AluSp SINE Alu 1 298 -15 243 250 15 29 chr15 27327360 27327428 -58368326 + Charlie8 DNA MER1_type 26 92 -2325 301 211 73 49 chr15 27328549 27328672 -58367082 - L1ME4a LINE L1 -2 6119 5994 216 158 0 0 chr15 27328743 27328781 -58366973 + (CA)n Simple_repeat Simple_repeat 2 39 0 797 283 66 30 chr15 27328796 27329203 -58366551 - L1ME4a LINE L1 -203 5918 5497 227 217 33 0 chr15 27330325 27330385 -58365369 + GA-rich Low_complexity Low_complexity 2 63 0 295 283 58 58 chr15 27330416 27330589 -58365165 - MIR SINE MIR -70 192 20 624 285 60 10 chr15 27330759 27330959 -58364795 + MIR SINE MIR 20 229 -33 9223 194 35 56 chr15 27331053 27336057 -58359697 + L1MA4A LINE L1 1 4832 -2376 369 132 0 0 chr15 27336084 27336137 -58359617 - AluJb SINE Alu -194 108 56 1172 225 0 13 chr15 27336137 27336373 -58359381 + AluJb SINE Alu 37 269 -43 8071 189 49 8 chr15 27336409 27338847 -58356907 + L1MA4A LINE L1 4823 7354 -11 22 35 0 0 chr15 27338887 27338916 -58356838 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 27338969 27338993 -58356761 + AT_rich Low_complexity Low_complexity 1 24 0 325 311 46 33 chr15 27339707 27339858 -58355896 - MER5A DNA MER1_type 0 189 37 221 143 0 20 chr15 27340122 27340171 -58355583 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 252 207 17 0 chr15 27340868 27340926 -58354828 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 27340940 27341052 -58354702 - L2 LINE L2 0 3313 3199 743 325 88 15 chr15 27341265 27341594 -58354160 - L2 LINE L2 -3 3269 2917 984 190 70 16 chr15 27341603 27341946 -58353808 + L1PA15-16 LINE L1 2737 3111 -3738 5703 200 34 44 chr15 27342049 27342746 -58353008 + L1MB1 LINE L1 3748 4450 -1696 4727 168 2 22 chr15 27342746 27343554 -58352200 - MER54B LTR ERVL 0 793 2 5703 200 34 44 chr15 27343554 27343587 -58352167 + L1MB1 LINE L1 4450 4482 -1664 2227 93 3 29 chr15 27343587 27343897 -58351857 + AluSc SINE Alu 1 302 -7 5703 200 34 44 chr15 27343897 27344595 -58351159 + L1MB1 LINE L1 4482 5164 -982 2101 101 3 44 chr15 27344595 27344893 -58350861 + AluSg SINE Alu 3 288 -22 5703 200 34 44 chr15 27344893 27344992 -58350762 + L1MB1 LINE L1 5164 5262 -884 24585 148 34 16 chr15 27344992 27347028 -58348726 - L1P3 LINE L1 -746 5715 3717 216 86 0 0 chr15 27347028 27347063 -58348691 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24585 148 34 16 chr15 27347063 27350569 -58345185 - L1P3 LINE L1 -2744 3717 4 1218 94 11 6 chr15 27350570 27350749 -58345005 + MLT2A2 LTR ERVL 295 453 0 5125 164 25 4 chr15 27350749 27351780 -58343974 + L1PA16 LINE L1 5116 6165 -1 3163 186 35 3 chr15 27351807 27352436 -58343318 + L1MB1 LINE L1 5482 6130 -38 33 56 0 0 chr15 27352809 27352863 -58342891 + AT_rich Low_complexity Low_complexity 1 54 0 264 286 158 18 chr15 27352943 27352991 -58342763 + HAL1b LINE L1 513 553 -795 1702 171 10 17 chr15 27352991 27353283 -58342471 - AluJo SINE Alu -22 290 1 264 286 158 18 chr15 27353283 27353507 -58342247 + HAL1b LINE L1 553 823 -525 312 264 11 11 chr15 27354144 27354231 -58341523 + L1MC4a LINE L1 2729 2815 -3331 205 73 24 49 chr15 27354326 27354367 -58341387 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 238 291 52 17 chr15 27354378 27354608 -58341146 + L1MC4a LINE L1 2953 3190 -2956 683 319 76 53 chr15 27354842 27356058 -58339696 + L1MC4a LINE L1 3366 4608 -1538 2180 106 17 0 chr15 27356166 27356468 -58339286 - AluSx SINE Alu -5 307 1 254 328 45 8 chr15 27356586 27356720 -58339034 + L1MC4a LINE L1 4882 5020 -1126 1412 260 68 36 chr15 27356910 27356992 -58338762 + L1MC4a LINE L1 5260 5338 -2470 2498 54 0 3 chr15 27356992 27357289 -58338465 + AluY SINE Alu 1 296 -15 1412 260 68 36 chr15 27357289 27357852 -58337902 + L1MC4a LINE L1 5338 5926 -1882 229 251 210 27 chr15 27358690 27359024 -58336730 - L1ME4a LINE L1 -2 6119 5725 6085 77 37 6 chr15 27359091 27360061 -58335693 + L1PA11 LINE L1 5176 6173 -1 283 294 0 33 chr15 27360934 27361026 -58334728 - L1ME4a LINE L1 -415 5706 5618 27350 122 9 72 chr15 27361957 27367013 -58328741 + L1P LINE L1 3 4741 -1405 7057 59 1 2 chr15 27367124 27368637 -58327117 + L1PA7 LINE L1 4640 6153 -1 198 283 0 0 chr15 27368740 27368786 -58326968 - L2 LINE L2 -3 3310 3265 21 0 0 0 chr15 27368852 27368873 -58326881 + AT_rich Low_complexity Low_complexity 1 21 0 898 177 39 11 chr15 27369471 27369703 -58326051 - Charlie3 DNA MER1_type -4 2706 144 21 71 0 0 chr15 27369972 27370014 -58325740 + AT_rich Low_complexity Low_complexity 1 42 0 268 314 7 29 chr15 27370051 27370191 -58325563 - L1ME4a LINE L1 -480 5641 5505 643 279 88 89 chr15 27370241 27370428 -58325326 - L1ME4a LINE L1 -747 5399 5213 2109 121 0 22 chr15 27370428 27370742 -58325012 - AluSq SINE Alu -6 307 1 822 143 32 0 chr15 27370750 27370876 -58324878 - FLAM_A SINE Alu -3 130 1 643 279 88 89 chr15 27370876 27371532 -58324222 - L1ME4a LINE L1 -940 5206 4548 1670 139 8 4 chr15 27371708 27371975 -58323779 + MER2 DNA MER2_type 75 342 -3 328 247 25 12 chr15 27372308 27372389 -58323365 + MIR3 SINE MIR 119 200 -8 441 304 6 0 chr15 27372768 27372887 -58322867 - MIR SINE MIR -61 147 24 185 267 33 17 chr15 27374041 27374101 -58321653 + MIR SINE MIR 158 218 -44 412 265 7 102 chr15 27374298 27374445 -58321309 - MIR3 SINE MIR -31 177 45 432 55 0 0 chr15 27375208 27375263 -58320491 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 75 25 0 chr15 27375284 27375324 -58320430 + (TG)n Simple_repeat Simple_repeat 1 41 0 797 234 68 19 chr15 27375503 27375708 -58320046 - MIR SINE MIR -3 259 45 389 305 0 65 chr15 27376429 27376583 -58319171 - MIR SINE MIR -35 227 84 947 220 6 0 chr15 27377144 27377321 -58318433 - MER45A DNA AcHobo 0 178 1 691 142 33 33 chr15 27378911 27379031 -58316723 + 5S rRNA rRNA 1 120 -1 1087 288 107 87 chr15 27379207 27380396 -58315358 + L2 LINE L2 1764 2976 -338 359 308 8 62 chr15 27380390 27380520 -58315234 + L2 LINE L2 3137 3259 -13 * 511 302 68 10 chr15 27380551 27380743 -58315011 - MIR SINE MIR -47 215 13 991 290 53 31 chr15 27380784 27381294 -58314460 - LTR33 LTR ERVL 0 521 1 2469 75 0 0 chr15 27381569 27381864 -58313890 - AluY SINE Alu -16 295 1 1142 249 72 5 chr15 27381905 27382307 -58313447 - MER69 DNA AcHobo -81 2445 2017 387 243 10 39 chr15 27382308 27382411 -58313343 - MER69 DNA AcHobo -425 801 702 337 286 48 32 chr15 27382682 27382808 -58312946 - MIR SINE MIR -61 201 74 29 28 0 0 chr15 27382808 27382844 -58312910 + AT_rich Low_complexity Low_complexity 1 36 0 241 214 0 0 chr15 27385288 27385343 -58310411 + polypurine Low_complexity Low_complexity 1 55 0 521 340 70 0 chr15 27388892 27389092 -58306662 + MIR SINE MIR 28 241 -21 418 323 62 0 chr15 27389178 27389308 -58306446 + L2 LINE L2 3133 3270 -2 749 212 76 68 chr15 27391298 27391534 -58304220 - L2 LINE L2 0 3313 3076 307 200 29 14 chr15 27391707 27391777 -58303977 + MLT1J1 LTR MaLR 70 140 -306 425 216 52 9 chr15 27391869 27391985 -58303769 + MLT1I LTR MaLR 277 397 -12 236 333 20 30 chr15 27393047 27393146 -58302608 - L2 LINE L2 -16 3297 3200 180 355 25 25 chr15 27394922 27395043 -58300711 - L3 LINE CR1 -364 1213 1093 6282 49 1 4 chr15 27395104 27395801 -58299953 - L1P1 LINE L1 -498 5657 4964 2303 85 0 7 chr15 27395801 27396106 -58299648 + AluY SINE Alu 1 303 -8 6282 49 1 4 chr15 27396106 27396540 -58299214 - L1P1 LINE L1 -1191 4964 4530 2794 39 3 0 chr15 27396641 27397004 -58298750 - L1P LINE L1 -944 5202 4839 4273 22 0 0 chr15 27397004 27397494 -58298260 + L1PA3 LINE L1 5660 6152 -3 4765 175 12 20 chr15 27397608 27398793 -58296961 - L1MD1 LINE L1 -52 6190 5010 935 258 62 25 chr15 27398771 27399283 -58296471 - L1MD1 LINE L1 -2642 3504 2974 * 677 220 119 37 chr15 27399366 27399584 -58296170 + MIR SINE MIR 17 252 -10 264 352 6 11 chr15 27400588 27400764 -58294990 + GA-rich Low_complexity Low_complexity 2 176 0 363 44 0 0 chr15 27401219 27401264 -58294490 + (TG)n Simple_repeat Simple_repeat 1 45 0 909 250 23 14 chr15 27402515 27402731 -58293023 - MIR SINE MIR 0 262 45 201 188 72 87 chr15 27403247 27403316 -58292438 + L2 LINE L2 3246 3313 0 259 216 159 0 chr15 27403397 27403485 -58292269 - MIR SINE MIR -71 191 90 278 269 39 77 chr15 27403567 27403697 -58292057 - MIR3 SINE MIR -76 132 8 22 35 0 0 chr15 27403938 27403967 -58291787 + AT_rich Low_complexity Low_complexity 1 29 0 212 143 0 0 chr15 27404315 27404350 -58291404 + (GA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr15 27404441 27404462 -58291292 + (A)n Simple_repeat Simple_repeat 1 21 0 33 0 0 0 chr15 27405045 27405078 -58290676 + AT_rich Low_complexity Low_complexity 1 33 0 640 286 83 44 chr15 27405327 27405579 -58290175 + MIR SINE MIR 1 262 0 236 208 21 0 chr15 27406392 27406440 -58289314 + MER3 DNA MER1_type 42 90 -119 * 407 155 119 0 chr15 27406403 27406487 -58289267 - MER3 DNA MER1_type -6 203 110 184 302 121 43 chr15 27407258 27407374 -58288380 - L2 LINE L2 0 3272 3148 221 330 0 32 chr15 27407384 27407478 -58288276 - MIR3 SINE MIR -15 193 103 318 304 40 8 chr15 27409017 27409142 -58286612 - MIR3 SINE MIR -79 129 1 392 277 0 0 chr15 27412278 27412361 -58283393 + L2 LINE L2 3188 3270 -2 220 266 31 0 chr15 27412444 27412508 -58283246 - MIR SINE MIR -1 261 196 704 144 52 6 chr15 27412513 27412687 -58283067 - MER53 DNA DNA -5 184 3 329 200 0 70 chr15 27412693 27412793 -58282961 - MIR SINE MIR -60 202 110 417 195 49 65 chr15 27413237 27413360 -58282394 - MIR SINE MIR -141 121 1 1169 271 43 29 chr15 27414287 27414708 -58281046 - LTR16A LTR ERVL -6 444 18 545 175 21 0 chr15 27414801 27414898 -58280856 - FLAM_C SINE Alu -32 111 13 2237 133 0 0 chr15 27415842 27416151 -58279603 - AluSx SINE Alu -3 309 1 1110 259 218 19 chr15 27417457 27417832 -58277922 + L2 LINE L2 1774 2073 -1241 1551 192 31 3 chr15 27417832 27418118 -58277636 - AluJb SINE Alu -18 294 1 1981 95 7 22 chr15 27418127 27418401 -58277353 - AluSq SINE Alu -9 304 35 1110 259 218 19 chr15 27418401 27418656 -58277098 + L2 LINE L2 2079 2542 -772 362 231 27 41 chr15 27418678 27418825 -58276929 + L1MC5 LINE L1 7641 7785 -176 468 0 0 0 chr15 27418982 27419034 -58276720 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1138 294 137 16 chr15 27419034 27419719 -58276035 + L2 LINE L2 2544 3309 -4 300 53 0 0 chr15 27421643 27421681 -58274073 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr15 27421878 27421907 -58273847 + AT_rich Low_complexity Low_complexity 1 29 0 474 303 37 120 chr15 27423138 27423727 -58272027 + L2 LINE L2 2735 3271 -1 497 287 81 0 chr15 27424172 27424346 -58271408 - MER5A DNA MER1_type -1 188 1 280 333 141 15 chr15 27424503 27424638 -58271116 - MIR3 SINE MIR -54 154 3 342 344 39 8 chr15 27425103 27425231 -58270523 + L2 LINE L2 3124 3255 -17 297 51 0 0 chr15 27425232 27425271 -58270483 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 27 49 0 0 chr15 27425870 27425911 -58269843 + AT_rich Low_complexity Low_complexity 1 41 0 224 286 0 0 chr15 27426954 27427010 -58268744 + L2 LINE L2 3216 3271 -1 982 224 46 124 chr15 27427063 27427154 -58268600 - MLT1C LTR MaLR -2 465 368 2330 83 3 26 chr15 27427154 27427467 -58268287 + AluSc SINE Alu 1 306 -3 982 224 46 124 chr15 27427467 27427809 -58267945 - MLT1C LTR MaLR -99 368 66 217 231 0 19 chr15 27427904 27427956 -58267798 + GA-rich Low_complexity Low_complexity 1 51 0 4521 49 16 0 chr15 27430240 27430795 -58264959 - L1PA8 LINE L1 -13 6159 5596 402 260 191 9 chr15 27430820 27431155 -58264599 + L1ME4a LINE L1 5726 6121 0 1842 152 3 10 chr15 27431763 27432073 -58263681 - L1PA16 LINE L1 -10 6156 5849 2097 123 3 0 chr15 27432181 27432506 -58263248 - L1PA16 LINE L1 -312 5854 5529 2096 140 7 0 chr15 27432538 27432846 -58262908 - AluSq SINE Alu -3 310 1 623 251 55 6 chr15 27432921 27433084 -58262670 - MER5B DNA MER1_type -1 177 7 396 268 170 0 chr15 27433801 27433954 -58261800 + MIR SINE MIR 73 251 -11 287 227 159 0 chr15 27434001 27434089 -58261665 - MIR SINE MIR -73 135 34 723 265 27 5 chr15 27434439 27434662 -58261092 - LTR16A1 LTR ERVL -14 443 216 189 329 51 0 chr15 27435020 27435099 -58260655 - L2 LINE L2 -43 3229 3147 420 339 52 22 chr15 27435733 27435963 -58259791 - MIR SINE MIR -20 242 6 835 231 189 14 chr15 27438465 27438815 -58256939 + LTR33 LTR ERVL 106 516 -5 410 342 91 13 chr15 27439193 27439424 -58256330 - MIR SINE MIR -8 254 6 506 301 63 76 chr15 27439434 27439976 -58255778 - MARNA DNA Mariner -11 575 41 974 135 21 0 chr15 27439979 27440120 -58255634 + AluY SINE Alu 1 144 -167 873 238 56 10 chr15 27440685 27440987 -58254767 + L1MEc LINE L1 2070 2385 -4011 270 303 13 0 chr15 27440987 27441063 -58254691 - L2 LINE L2 -1018 2296 2220 437 129 0 0 chr15 27441256 27441318 -58254436 + Tigger2 DNA MER2_type 1 62 -2656 * 2500 130 46 28 chr15 27441316 27441571 -58254183 + Tigger2 DNA MER2_type 2273 2541 -177 2802 16 0 0 chr15 27441571 27441880 -58253874 + AluYb8 SINE Alu 1 309 -9 2500 130 46 28 chr15 27441880 27442061 -58253693 + Tigger2 DNA MER2_type 2541 2717 -1 372 324 69 14 chr15 27442190 27442335 -58253419 + MIR3 SINE MIR 50 202 -6 297 330 0 0 chr15 27442960 27443048 -58252706 - MIR SINE MIR -18 244 157 220 295 205 18 chr15 27443185 27443297 -58252457 - MIR3 SINE MIR -62 146 14 498 331 39 17 chr15 27443533 27443711 -58252043 + MIR3 SINE MIR 16 197 -11 443 310 90 28 chr15 27443883 27444138 -58251616 + MLT1K LTR MaLR 13 283 -305 369 149 0 0 chr15 27444156 27444223 -58251531 + (TC)n Simple_repeat Simple_repeat 2 68 0 226 0 59 0 chr15 27444294 27444328 -58251426 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 604 264 58 19 chr15 27445706 27445914 -58249840 - L3 LINE CR1 -25 1552 1337 490 226 17 0 chr15 27445931 27446046 -58249708 - L1PA16 LINE L1 -5 6161 6045 472 211 10 0 chr15 27446046 27446150 -58249604 + LTR60 LTR ERV1 2 106 -480 1310 146 51 152 chr15 27446237 27446327 -58249427 + LTR60 LTR ERV1 147 245 -341 2183 120 7 0 chr15 27446327 27446627 -58249127 + AluSx SINE Alu 1 302 -10 1310 146 51 152 chr15 27446627 27446969 -58248785 + LTR60 LTR ERV1 245 535 -51 1118 173 30 94 chr15 27446826 27447155 -58248599 + TAR1 Satellite telomeric 4 311 -1800 * 4415 107 8 19 chr15 27447157 27447874 -58247880 - L1PA16 LINE L1 -117 6049 5341 1679 311 92 61 chr15 27447899 27448920 -58246834 - L3 LINE CR1 -266 1311 256 2723 106 0 11 chr15 27448920 27449299 -58246455 + THE1C LTR MaLR 1 375 0 1679 311 92 61 chr15 27449299 27449320 -58246434 - L3 LINE CR1 -1321 256 237 509 320 58 79 chr15 27450606 27450987 -58244767 - L2 LINE L2 -373 2941 2569 883 207 58 81 chr15 27451007 27451268 -58244486 - MIR SINE MIR 0 262 8 213 326 56 34 chr15 27451841 27451930 -58243824 + MIR SINE MIR 116 206 -56 377 248 228 0 chr15 27452016 27452161 -58243593 - MLT1I LTR MaLR 0 409 232 240 279 16 0 chr15 27452268 27452329 -58243425 - MLT1I LTR MaLR -347 62 1 2469 77 0 3 chr15 27452403 27452715 -58243039 + AluY SINE Alu 1 311 0 336 299 142 35 chr15 27452981 27453235 -58242519 + MLT1K LTR MaLR 289 569 -19 198 103 0 0 chr15 27453993 27454022 -58241732 + (CCA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr15 27454109 27454131 -58241623 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 231 266 27 131 chr15 27454131 27454353 -58241401 - L2 LINE L2 -13 3300 3102 182 205 0 77 chr15 27454371 27454410 -58241344 + L2 LINE L2 3031 3066 -206 252 86 0 0 chr15 27454583 27454618 -58241136 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr15 27454618 27454640 -58241114 + (CA)n Simple_repeat Simple_repeat 2 23 0 209 224 26 26 chr15 27454654 27454730 -58241024 + (TA)n Simple_repeat Simple_repeat 2 77 0 638 194 8 24 chr15 27454803 27454927 -58240827 - FLAM_C SINE Alu -11 122 1 373 278 71 0 chr15 27455143 27455269 -58240485 - MIR SINE MIR -36 226 92 291 54 0 0 chr15 27457421 27457458 -58238296 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 490 282 106 35 chr15 27458348 27458518 -58237236 + MIR SINE MIR 47 228 -34 556 209 165 25 chr15 27458618 27458776 -58236978 - MER5A DNA MER1_type -6 183 4 2448 136 44 5 chr15 27460018 27460430 -58235324 + MSTA LTR MaLR 1 428 0 485 331 154 47 chr15 27461107 27462023 -58233731 + L3 LINE CR1 552 1565 -12 1258 169 42 8 chr15 27462550 27462787 -58232967 - MSTA LTR MaLR 0 428 184 536 146 22 54 chr15 27462997 27463182 -58232572 + L1MA8 LINE L1 6113 6291 0 23 0 0 0 chr15 27463722 27463745 -58232009 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 27464136 27464165 -58231589 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 27465075 27465096 -58230658 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 27466173 27466203 -58229551 + AT_rich Low_complexity Low_complexity 1 30 0 180 121 15 45 chr15 27467903 27467969 -58227785 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 239 275 165 0 chr15 27468023 27468114 -58227640 + MIR SINE MIR 29 134 -128 217 278 25 99 chr15 27468191 27468353 -58227401 + MIR SINE MIR 75 224 -38 21 36 0 0 chr15 27468387 27468415 -58227339 + AT_rich Low_complexity Low_complexity 1 28 0 210 282 42 42 chr15 27468798 27468869 -58226885 + MIR SINE MIR 12 82 -180 337 265 0 0 chr15 27468895 27468978 -58226776 - MIR SINE MIR -74 188 106 2095 130 3 10 chr15 27469234 27469541 -58226213 - AluSg SINE Alu -5 305 1 180 158 0 53 chr15 27470233 27470271 -58225483 + L3 LINE CR1 1451 1486 -91 196 66 131 0 chr15 27470579 27470640 -58225114 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 292 230 108 0 chr15 27471014 27471088 -58224666 + L2 LINE L2 3231 3312 -1 2095 114 13 23 chr15 27471175 27471483 -58224271 - AluSg SINE Alu -4 306 2 540 0 0 0 chr15 27471483 27471543 -58224211 + (TC)n Simple_repeat Simple_repeat 2 61 0 443 221 0 9 chr15 27471543 27471656 -58224098 + (TA)n Simple_repeat Simple_repeat 2 113 0 4177 71 3 7 chr15 27471669 27472244 -58223510 - L1PA7 LINE L1 -20 6134 5562 265 337 0 11 chr15 27473768 27473863 -58221891 + GA-rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr15 27474596 27474618 -58221136 + AT_rich Low_complexity Low_complexity 1 22 0 2492 94 0 0 chr15 27474777 27475086 -58220668 + AluSc SINE Alu 1 309 0 418 243 10 0 chr15 27476146 27476249 -58219505 - MER94 DNA DNA -30 104 1 797 212 0 48 chr15 27476746 27476911 -58218843 - AluJo SINE Alu -9 293 137 763 244 151 34 chr15 27476912 27477503 -58218251 + HAL1 LINE L1 978 1637 -870 1411 104 16 32 chr15 27477551 27477800 -58217954 + L1MA2 LINE L1 6060 6304 0 896 133 0 44 chr15 27479165 27479300 -58216454 - AluJo SINE Alu -183 129 1 2388 67 0 0 chr15 27479399 27479684 -58216070 + AluY SINE Alu 1 285 -26 2352 56 0 0 chr15 27480153 27480438 -58215316 + AluY SINE Alu 15 299 -12 595 306 6 0 chr15 27482055 27482212 -58213542 - MIR SINE MIR 0 262 105 819 225 61 39 chr15 27483698 27483867 -58211887 + L2 LINE L2 2535 2716 -598 2301 167 94 15 chr15 27483867 27484333 -58211421 - MLT1D LTR MaLR -2 503 1 819 225 61 39 chr15 27484333 27484474 -58211280 + L2 LINE L2 2716 2852 -462 1568 271 149 0 chr15 27484474 27485039 -58210715 + MER69 DNA AcHobo 1 649 -1877 209 73 0 49 chr15 27485055 27485096 -58210658 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 29 60 0 0 chr15 27485117 27485167 -58210587 + AT_rich Low_complexity Low_complexity 1 50 0 637 129 60 17 chr15 27485176 27485680 -58210074 + (TA)n Simple_repeat Simple_repeat 1 525 0 304 113 0 0 chr15 27485793 27485846 -58209908 + Alu SINE Alu 248 300 0 1033 263 133 47 chr15 27485879 27486309 -58209445 + L2 LINE L2 2847 3313 0 249 139 0 0 chr15 27486309 27486352 -58209402 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 670 117 0 0 chr15 27486372 27486483 -58209271 - L1PA10 LINE L1 -1278 4868 4758 5596 82 22 95 chr15 27486483 27487853 -58207901 + L1PA10 LINE L1 4866 6164 -4 1303 187 15 22 chr15 27487859 27488132 -58207622 + MLT1A1 LTR MaLR 45 315 -50 779 194 0 0 chr15 27488238 27488367 -58207387 - FLAM_C SINE Alu -4 129 1 30 0 0 0 chr15 27488605 27488635 -58207119 + AT_rich Low_complexity Low_complexity 1 30 0 298 312 64 6 chr15 27489311 27489468 -58206286 + L1ME LINE L1 138 303 -5902 764 295 90 25 chr15 27489810 27490706 -58205048 + L1ME LINE L1 786 1740 -4656 768 262 81 24 chr15 27491131 27491513 -58204241 + L1ME LINE L1 2200 2603 -3612 1516 196 120 17 chr15 27491534 27491942 -58203812 + MLT2B1 LTR ERVL 1 450 -70 266 243 10 0 chr15 27491947 27492050 -58203704 + (TA)n Simple_repeat Simple_repeat 1 104 0 324 151 9 160 chr15 27492054 27492160 -58203594 - L1MC4 LINE L1 -1340 6702 6613 238 175 0 32 chr15 27492162 27492225 -58203529 + (TA)n Simple_repeat Simple_repeat 1 61 0 263 315 133 14 chr15 27492328 27492471 -58203283 + L3 LINE CR1 922 1081 -496 185 341 91 11 chr15 27492592 27492680 -58203074 - L2 LINE L2 -39 3233 3139 234 371 114 22 chr15 27492752 27492953 -58202801 + L3 LINE CR1 1186 1367 -210 1631 213 13 3 chr15 27492953 27493258 -58202496 + AluJo SINE Alu 1 308 -4 234 371 114 22 chr15 27493258 27493414 -58202340 + L3 LINE CR1 1367 1576 -1 207 330 146 15 chr15 27493460 27493721 -58202033 - L2 LINE L2 -1021 2293 1999 334 202 87 58 chr15 27495363 27495467 -58200287 - MIR SINE MIR -55 207 101 1989 151 26 0 chr15 27495759 27496063 -58199691 - AluJo SINE Alu 0 312 1 632 129 9 52 chr15 27496253 27496369 -58199385 - ORSL DNA AcHobo 0 275 165 528 186 10 0 chr15 27496515 27496617 -58199137 - ORSL DNA AcHobo -172 103 1 1758 186 0 3 chr15 27496840 27497146 -58198608 - AluJo SINE Alu -3 309 5 2196 83 33 20 chr15 27497327 27497627 -58198127 + AluSp SINE Alu 2 305 -8 205 200 0 0 chr15 27498460 27498500 -58197254 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 330 330 176 5 chr15 27498518 27498706 -58197048 + L1MC4 LINE L1 7459 7678 -364 394 224 17 9 chr15 27498780 27498896 -58196858 + L1MC4 LINE L1 7758 7874 -168 12519 196 7 2 chr15 27498927 27501690 -58194064 + L1 LINE L1 2252 5028 -1118 1211 225 37 50 chr15 27502136 27502518 -58193236 + L1ME2 LINE L1 5779 6155 -9 29 0 0 0 chr15 27502519 27502548 -58193206 + AT_rich Low_complexity Low_complexity 1 29 0 278 295 19 29 chr15 27502921 27503026 -58192728 + MER5A DNA MER1_type 84 187 -2 206 287 16 107 chr15 27502923 27503045 -58192709 - MER5A DNA MER1_type -75 114 4 * 210 312 97 48 chr15 27503761 27504174 -58191580 + L2 LINE L2 2459 2891 -423 190 365 58 10 chr15 27506702 27506806 -58188948 + MIR SINE MIR 15 123 -139 189 302 63 0 chr15 27506923 27506986 -58188768 - L2 LINE L2 -1497 1817 1751 836 163 7 0 chr15 27506987 27507122 -58188632 + FLAM_C SINE Alu 1 136 -7 405 294 77 12 chr15 27507662 27507832 -58187922 + MIR SINE MIR 9 189 -73 195 162 0 0 chr15 27508604 27508641 -58187113 + (TG)n Simple_repeat Simple_repeat 2 38 0 2538 74 3 0 chr15 27508658 27508967 -58186787 + AluSp SINE Alu 1 310 -3 1850 104 21 11 chr15 27509222 27509501 -58186253 - L1PB1 LINE L1 0 6151 5870 236 285 7 51 chr15 27509543 27509680 -58186074 + CT-rich Low_complexity Low_complexity 2 132 0 294 354 73 17 chr15 27509710 27509888 -58185866 + MIR SINE MIR 60 247 -15 21 57 0 0 chr15 27509900 27509935 -58185819 + AT_rich Low_complexity Low_complexity 1 35 0 221 310 80 121 chr15 27509993 27510150 -58185604 - L2 LINE L2 -3 3269 3107 1710 151 31 57 chr15 27510150 27510468 -58185286 + AluJb SINE Alu 1 310 -2 221 310 80 121 chr15 27510468 27510774 -58184980 - L2 LINE L2 -165 3107 2825 422 298 8 8 chr15 27510833 27510957 -58184797 - MIR SINE MIR -23 239 116 884 163 0 0 chr15 27511237 27511378 -58184376 + FLAM_C SINE Alu 1 141 -2 214 271 110 127 chr15 27511392 27511802 -58183952 - L2 LINE L2 -825 2489 2087 217 234 78 47 chr15 27511842 27511906 -58183848 + L2 LINE L2 3247 3312 -1 36 40 0 0 chr15 27511971 27512021 -58183733 + AT_rich Low_complexity Low_complexity 1 50 0 2132 135 3 0 chr15 27512140 27512451 -58183303 - AluSx SINE Alu 0 312 1 3378 121 40 95 chr15 27512696 27513454 -58182300 + L1MA4 LINE L1 5585 6300 0 23 0 0 0 chr15 27515472 27515495 -58180259 + AT_rich Low_complexity Low_complexity 1 23 0 422 289 83 62 chr15 27515532 27515905 -58179849 + L1MC4a LINE L1 5439 5819 -1989 427 286 257 0 chr15 27515922 27516093 -58179661 + MIR SINE MIR 35 249 -13 269 243 10 48 chr15 27516095 27516198 -58179556 + L1MC4a LINE L1 5806 5904 -1904 22 0 0 0 chr15 27516208 27516230 -58179524 + AT_rich Low_complexity Low_complexity 1 22 0 399 182 215 66 chr15 27516238 27516359 -58179395 + L2 LINE L2 3173 3311 -2 1241 161 18 0 chr15 27516383 27516607 -58179147 + L1MB4 LINE L1 5935 6162 -18 199 307 50 79 chr15 27517364 27517465 -58178289 - L2 LINE L2 -43 3229 3132 21 57 0 0 chr15 27517548 27517583 -58178171 + AT_rich Low_complexity Low_complexity 1 35 0 191 111 0 28 chr15 27517620 27517656 -58178098 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 266 18 62 chr15 27517947 27518060 -58177694 + MIR SINE MIR 88 195 -67 1631 147 13 43 chr15 27518259 27518885 -58176869 + LTR8 LTR ERV1 1 689 -2 247 136 0 0 chr15 27519040 27519084 -58176670 - Charlie7 DNA MER1_type -2513 99 56 2315 134 35 7 chr15 27520678 27521103 -58174651 + LTR23 LTR ERV1 1 437 0 450 152 72 3 chr15 27521394 27521531 -58174223 + MER41C LTR ERV1 2 188 -366 450 130 0 0 chr15 27521531 27521600 -58174154 - MER41B LTR ERV1 0 635 567 * 1662 126 4 11 chr15 27521598 27521867 -58173887 - LTR39 LTR ERV1 -501 282 16 * 2938 152 71 63 chr15 27521845 27522495 -58173259 + LTR39 LTR ERV1 129 783 0 2362 86 0 32 chr15 27523891 27524205 -58171549 + AluSg SINE Alu 1 304 -6 1714 197 61 23 chr15 27524343 27524784 -58170970 - MLT1C LTR MaLR 0 467 10 1912 93 0 0 chr15 27524843 27525090 -58170664 + AluSc SINE Alu 63 309 0 301 303 113 44 chr15 27525211 27525485 -58170269 + L2 LINE L2 2931 3223 -49 * 375 281 16 87 chr15 27525478 27525608 -58170146 + MIR3 SINE MIR 25 140 -68 2222 104 3 7 chr15 27525608 27525915 -58169839 + AluY SINE Alu 1 306 -5 375 281 16 87 chr15 27525915 27525969 -58169785 + MIR3 SINE MIR 140 196 -12 2309 119 8 41 chr15 27525977 27526365 -58169389 - THE1C LTR MaLR 0 375 1 697 258 140 0 chr15 27526409 27526595 -58169159 - MIR SINE MIR -45 217 6 187 89 0 44 chr15 27526841 27526886 -58168868 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 45 69 0 0 chr15 27526890 27526977 -58168777 + AT_rich Low_complexity Low_complexity 1 87 0 6491 63 4 1 chr15 27527395 27528233 -58167521 + L1PA7 LINE L1 5312 6151 -3 2044 137 10 51 chr15 27528245 27528412 -58167342 + L1MA9 LINE L1 5786 5958 -354 1888 139 0 50 chr15 27528412 27528735 -58167019 + AluJb SINE Alu 3 309 -3 2044 137 10 51 chr15 27528735 27528962 -58166792 + L1MA9 LINE L1 5958 6164 -148 782 159 23 0 chr15 27528967 27529099 -58166655 + AluJo SINE Alu 1 135 -177 906 102 13 19 chr15 27529103 27529260 -58166494 + L1MA9 LINE L1 6157 6312 0 22 0 0 0 chr15 27529333 27529355 -58166399 + AT_rich Low_complexity Low_complexity 1 22 0 221 355 64 63 chr15 27529491 27529971 -58165783 - L2 LINE L2 -219 3053 2377 572 249 72 28 chr15 27531824 27532005 -58163749 + MIR SINE MIR 9 197 -65 464 307 18 0 chr15 27533212 27533378 -58162376 + L1ME LINE L1 5523 5691 -430 1015 84 22 17 chr15 27533424 27533603 -58162151 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5304 58 5 0 chr15 27534056 27534730 -58161024 + L1PA8 LINE L1 5496 6172 0 1401 141 12 28 chr15 27535037 27535292 -58160462 + L1PB3 LINE L1 5903 6153 -1 295 355 37 42 chr15 27535843 27536032 -58159722 + MER5A DNA MER1_type 1 188 -1 284 370 111 0 chr15 27536596 27536731 -58159023 - L2 LINE L2 -2 3270 3121 226 71 0 0 chr15 27536775 27536817 -58158937 - MER3 DNA MER1_type -29 180 139 302 125 0 0 chr15 27536826 27536874 -58158880 + L1MB7 LINE L1 6127 6174 -10 310 231 231 8 chr15 27536885 27537015 -58158739 - MER3 DNA MER1_type -50 159 1 247 296 95 39 chr15 27537036 27537215 -58158539 - L2 LINE L2 -187 3085 2897 428 240 34 29 chr15 27537403 27537578 -58158176 - L1ME3A LINE L1 -6 6164 5989 1903 241 65 20 chr15 27538284 27538795 -58156959 - MLT1F LTR MaLR -8 534 1 1793 144 11 58 chr15 27539212 27539393 -58156361 + MER65A LTR ERV1 115 274 -171 2321 98 0 0 chr15 27539393 27539689 -58156065 - AluSx SINE Alu -16 296 1 1793 144 11 58 chr15 27539689 27539854 -58155900 + MER65A LTR ERV1 274 445 0 195 162 0 0 chr15 27539920 27539957 -58155797 + (TTA)n Simple_repeat Simple_repeat 2 38 0 344 318 26 13 chr15 27540276 27540427 -58155327 - MER117 DNA MER1_type -44 153 1 182 189 0 0 chr15 27540440 27540477 -58155277 - MER5B DNA MER1_type -16 162 126 277 157 29 14 chr15 27540487 27540557 -58155197 + L1MC5 LINE L1 7682 7752 -209 3413 235 127 62 chr15 27540557 27540775 -58154979 - L1MC4 LINE L1 -134 7674 7471 1398 204 67 45 chr15 27540775 27541132 -58154622 - MLT1A1 LTR MaLR 0 365 1 3413 235 127 62 chr15 27541132 27542066 -58153688 - L1MC4 LINE L1 -337 7471 6599 2171 114 0 13 chr15 27542066 27542374 -58153380 - AluSx SINE Alu -8 304 1 3413 235 127 62 chr15 27542374 27542521 -58153233 - L1MC4 LINE L1 -1209 6599 6463 1911 133 48 79 chr15 27542521 27542875 -58152879 + MER61A LTR ERV1 1 343 0 3413 235 127 62 chr15 27542875 27543197 -58152557 - L1MC4 LINE L1 -1345 6463 6114 2154 108 3 3 chr15 27543197 27543493 -58152261 + AluSg SINE Alu 1 296 -14 3413 235 127 62 chr15 27543493 27543677 -58152077 - L1MC4 LINE L1 -1694 6114 5943 248 77 26 0 chr15 27543804 27543843 -58151911 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 884 93 187 13 chr15 27544836 27544986 -58150768 + THE1C LTR MaLR 1 176 -199 1486 120 0 0 chr15 27545088 27545296 -58150458 - AluSc SINE Alu -101 208 1 8113 185 82 83 chr15 27545538 27546341 -58149413 - MER65-int LTR ERV1 -2363 2508 1705 1522 119 0 5 chr15 27546341 27546551 -58149203 - AluSg/x SINE Alu -19 293 85 8113 185 82 83 chr15 27546551 27547717 -58148037 - MER65-int LTR ERV1 -3166 1705 1311 585 92 0 0 chr15 27547717 27547815 -58147939 + (TA)n Simple_repeat Simple_repeat 2 99 0 8113 185 82 83 chr15 27547815 27549045 -58146709 - MER65-int LTR ERV1 -3560 1311 81 667 106 21 0 chr15 27549119 27549213 -58146541 - L1PB3 LINE L1 -1 6153 6058 21911 189 46 25 chr15 27549213 27549387 -58146367 - L1M4 LINE L1 -1433 6132 5963 11273 47 7 14 chr15 27549387 27550771 -58144983 + SVA Other Other 2 1376 -10 21911 189 46 25 chr15 27550771 27554160 -58141594 - L1M4 LINE L1 -1602 5963 2647 2634 52 0 0 chr15 27554160 27554469 -58141285 - AluY SINE Alu -2 309 1 21911 189 46 25 chr15 27554469 27556704 -58139050 - L1M4 LINE L1 -4918 2647 193 2108 131 0 19 chr15 27556704 27557016 -58138738 - AluSx SINE Alu -6 306 1 21911 189 46 25 chr15 27557016 27557204 -58138550 - L1M4 LINE L1 -7372 193 10 785 279 119 17 chr15 27557217 27557634 -58138120 + L1M4c LINE L1 954 1327 -5208 360 0 0 0 chr15 27557634 27557674 -58138080 + (CA)n Simple_repeat Simple_repeat 2 41 0 785 279 119 17 chr15 27557674 27557995 -58137759 + L1M4c LINE L1 1327 1939 -4596 1872 198 51 30 chr15 27558868 27559298 -58136456 - MLT1C LTR MaLR -2 465 17 447 309 8 24 chr15 27559336 27559459 -58136295 + MIR SINE MIR 25 145 -63 235 341 74 41 chr15 27559563 27559833 -58135921 - L2 LINE L2 -997 2317 2039 15038 199 43 22 chr15 27559859 27562299 -58133455 + L1PB1 LINE L1 27 2415 -4452 219 36 0 0 chr15 27562299 27562327 -58133427 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 15038 199 43 22 chr15 27562327 27563804 -58131950 + L1PB1 LINE L1 2415 3860 -3007 9558 50 4 144 chr15 27563804 27565392 -58130362 + SVA Other Other 20 1386 0 15038 199 43 22 chr15 27565392 27567663 -58128091 + L1PB1 LINE L1 3860 6505 -362 240 119 0 71 chr15 27567731 27567815 -58127939 + (TA)n Simple_repeat Simple_repeat 1 78 0 2434 132 8 16 chr15 27567823 27568194 -58127560 + L1PB1 LINE L1 6497 6864 -3 42 20 0 0 chr15 27568194 27568243 -58127511 + AT_rich Low_complexity Low_complexity 1 49 0 217 308 33 22 chr15 27568931 27569022 -58126732 - MIR SINE MIR -142 120 29 749 235 130 0 chr15 27569365 27569527 -58126227 + MER5A DNA MER1_type 1 183 -6 22 35 0 0 chr15 27570143 27570172 -58125582 + AT_rich Low_complexity Low_complexity 1 29 0 800 179 0 22 chr15 27570197 27570331 -58125423 - FLAM_A SINE Alu -1 132 2 485 45 0 15 chr15 27570418 27570484 -58125270 - L1MB3 LINE L1 -7 6176 6112 216 310 35 0 chr15 27570842 27570900 -58124854 + L2 LINE L2 3210 3269 -3 2318 151 28 6 chr15 27571211 27571568 -58124186 + MLT1A1 LTR MaLR 1 365 0 591 278 162 53 chr15 27571726 27572140 -58123614 + MLT1K LTR MaLR 108 566 -22 184 232 183 12 chr15 27573660 27573742 -58122012 - MIR SINE MIR -76 132 37 343 289 89 0 chr15 27574758 27574893 -58120861 - MIR SINE MIR -24 238 92 377 221 152 35 chr15 27574963 27575108 -58120646 + MIR3 SINE MIR 24 185 -23 2006 131 13 7 chr15 27575665 27575963 -58119791 - AluJb SINE Alu -12 300 1 247 222 48 16 chr15 27576015 27576078 -58119676 - MIR3 SINE MIR -26 182 118 2216 112 0 3 chr15 27576224 27576527 -58119227 + AluSx SINE Alu 1 302 -10 195 235 0 39 chr15 27577146 27577197 -58118557 - L3 LINE CR1 -4 1573 1525 403 239 5 151 chr15 27577254 27577292 -58118462 - MER5A DNA MER1_type -11 178 136 2455 78 0 0 chr15 27577292 27577599 -58118155 - AluY SINE Alu -4 307 1 403 239 5 151 chr15 27577599 27577626 -58118128 - MER5A DNA MER1_type -53 136 107 2013 144 0 20 chr15 27577626 27577931 -58117823 + AluJb SINE Alu 1 299 -13 403 239 5 151 chr15 27577931 27578069 -58117685 - MER5A DNA MER1_type -82 107 4 1957 103 7 11 chr15 27578095 27578407 -58117347 - AluSc SINE Alu 0 311 1 293 298 0 48 chr15 27578409 27578513 -58117241 - MIR SINE MIR -63 145 47 204 160 40 80 chr15 27580298 27580348 -58115406 + L2 LINE L2 3255 3302 -11 2063 116 0 0 chr15 27580348 27580623 -58115131 + AluSx SINE Alu 1 275 -37 651 26 0 0 chr15 27580626 27580703 -58115051 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 234 62 0 0 chr15 27580704 27580736 -58115018 + (CATA)n Simple_repeat Simple_repeat 1 32 0 291 316 81 0 chr15 27582778 27582914 -58112840 + MIR SINE MIR 114 260 -2 967 225 142 56 chr15 27582941 27583336 -58112418 + LTR16A LTR ERVL 16 444 -6 2304 107 0 0 chr15 27583458 27583758 -58111996 + AluSx SINE Alu 9 308 -4 1451 98 13 60 chr15 27584207 27584441 -58111313 - AluJb SINE Alu -5 307 85 209 362 0 0 chr15 27584581 27584675 -58111079 + L2 LINE L2 2508 2601 -713 618 292 98 55 chr15 27584680 27585118 -58110636 + L2 LINE L2 2813 3269 -3 1738 161 45 7 chr15 27585551 27585837 -58109917 + AluJo SINE Alu 2 298 -14 330 338 88 49 chr15 27585894 27586384 -58109370 - L2 LINE L2 -181 3091 2560 395 295 37 98 chr15 27586513 27586858 -58108896 + HAL1 LINE L1 2053 2362 -145 2305 69 0 75 chr15 27586858 27587192 -58108562 + AluY SINE Alu 1 309 -2 395 295 37 98 chr15 27587192 27587327 -58108427 + HAL1 LINE L1 2362 2504 -3 2320 53 4 0 chr15 27587476 27587757 -58107997 + AluY SINE Alu 30 311 0 279 79 0 0 chr15 27587770 27587808 -58107946 + (TA)n Simple_repeat Simple_repeat 2 39 0 397 158 95 11 chr15 27587919 27588014 -58107740 + MER112 DNA MER1_type 1 103 -157 407 261 110 0 chr15 27588093 27588268 -58107486 - MIR SINE MIR -16 246 53 814 159 29 22 chr15 27588889 27589027 -58106727 + FLAM_C SINE Alu 2 140 -3 407 163 113 0 chr15 27589887 27589967 -58105787 - HsTC2 DNA Tc2 0 1900 1812 424 275 93 0 chr15 27590017 27590209 -58105545 - MIR SINE MIR -30 232 24 23 0 0 0 chr15 27590413 27590436 -58105318 + AT_rich Low_complexity Low_complexity 1 23 0 2206 69 0 14 chr15 27590903 27591179 -58104575 + AluY SINE Alu 39 310 -1 1662 173 35 3 chr15 27591319 27591603 -58104151 + AluJo SINE Alu 1 293 -19 1418 199 48 17 chr15 27591819 27592135 -58103619 + AluJo SINE Alu 1 312 0 1163 275 60 63 chr15 27592388 27592675 -58103079 + L1MC4a LINE L1 5322 5609 -553 1685 146 35 4 chr15 27592675 27592935 -58102819 - AluJo SINE Alu -23 289 22 1163 275 60 63 chr15 27592935 27593230 -58102524 + L1MC4a LINE L1 5609 5544 -618 2492 77 0 0 chr15 27593230 27593527 -58102227 - AluY SINE Alu -14 297 1 1163 275 60 63 chr15 27593527 27593601 -58102153 + L1MC4a LINE L1 5543 5616 -546 1245 184 28 0 chr15 27593806 27594024 -58101730 + MER58A DNA MER1_type 1 224 0 1829 153 43 0 chr15 27594570 27594693 -58101061 + AluJo SINE Alu 1 117 -195 189 0 0 0 chr15 27594693 27594714 -58101040 + (TA)n Simple_repeat Simple_repeat 1 21 0 1829 153 43 0 chr15 27594714 27594872 -58100882 + AluJo SINE Alu 117 294 -18 234 192 0 0 chr15 27595270 27595322 -58100432 + (TA)n Simple_repeat Simple_repeat 2 53 0 1588 158 67 38 chr15 27595343 27595685 -58100069 + MLT1A1 LTR MaLR 1 352 -13 240 35 0 0 chr15 27595685 27595714 -58100040 + (CA)n Simple_repeat Simple_repeat 2 30 0 613 160 173 7 chr15 27595714 27595853 -58099901 + MER46B DNA MER2_type 15 57 -179 1702 157 37 8 chr15 27595855 27596123 -58099631 + AluSx SINE Alu 1 276 -36 2249 111 0 0 chr15 27596124 27596422 -58099332 + AluY SINE Alu 1 298 -13 442 172 20 0 chr15 27596443 27596542 -58099212 + (TA)n Simple_repeat Simple_repeat 2 102 0 216 62 42 21 chr15 27596562 27596610 -58099144 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr15 27596801 27596824 -58098930 + AT_rich Low_complexity Low_complexity 1 23 0 870 215 27 32 chr15 27597764 27597983 -58097771 - MER20 DNA MER1_type -1 218 1 424 283 156 33 chr15 27598156 27598463 -58097291 + L2 LINE L2 2964 3308 -5 238 255 0 0 chr15 27598882 27598929 -58096825 + (CA)n Simple_repeat Simple_repeat 1 47 0 2138 136 0 0 chr15 27599180 27599489 -58096265 + AluSx SINE Alu 3 311 -1 498 250 157 23 chr15 27600015 27600231 -58095523 + MIR SINE MIR 17 261 -1 256 231 46 0 chr15 27600240 27600305 -58095449 + L2 LINE L2 3246 3313 0 189 204 23 23 chr15 27600882 27600926 -58094828 + L3 LINE CR1 1525 1568 -9 287 241 162 31 chr15 27601596 27601787 -58093967 + HAL1 LINE L1 154 369 -2138 14987 199 37 10 chr15 27601806 27603460 -58092294 + L1PB1 LINE L1 6 1614 -5253 2402 76 3 16 chr15 27603460 27603775 -58091979 + AluY SINE Alu 1 311 0 14987 199 37 10 chr15 27603775 27608276 -58087478 + L1PB1 LINE L1 1614 6506 -361 414 0 0 0 chr15 27608281 27608327 -58087427 + (TA)n Simple_repeat Simple_repeat 1 46 0 561 125 0 10 chr15 27608327 27608423 -58087331 - L1P LINE L1 -1403 4743 4649 264 165 41 8 chr15 27608423 27608544 -58087210 + (TA)n Simple_repeat Simple_repeat 2 126 0 2245 139 8 21 chr15 27608554 27608927 -58086827 + L1PB1 LINE L1 6498 6865 -2 2831 242 203 50 chr15 27608970 27609444 -58086310 + HAL1 LINE L1 418 818 -1689 2437 80 0 22 chr15 27609444 27609758 -58085996 + AluSg SINE Alu 1 307 -3 2831 242 203 50 chr15 27609758 27611077 -58084677 + HAL1 LINE L1 818 2485 -22 209 189 0 0 chr15 27611081 27611118 -58084636 + CT-rich Low_complexity Low_complexity 2 38 0 347 274 0 70 chr15 27611219 27611376 -58084378 + MIR SINE MIR 31 176 -86 204 299 82 21 chr15 27612016 27612113 -58083641 - L2 LINE L2 -33 3239 3137 369 225 67 8 chr15 27612395 27612515 -58083239 + MER94 DNA DNA 2 128 -6 1764 158 37 10 chr15 27612592 27612890 -58082864 + AluJo SINE Alu 1 306 -6 835 65 37 0 chr15 27613559 27613667 -58082087 + HY1 scRNA scRNA 1 112 0 31 0 0 0 chr15 27613673 27613704 -58082050 + AT_rich Low_complexity Low_complexity 1 31 0 287 262 10 29 chr15 27615186 27615289 -58080465 - MER5A DNA MER1_type -20 169 69 418 264 107 0 chr15 27615625 27615765 -58079989 + MIR SINE MIR 1 155 -107 2534 55 0 0 chr15 27615830 27616123 -58079631 + AluY SINE Alu 1 293 -18 1192 150 50 5 chr15 27616330 27616530 -58079224 - MER3 DNA MER1_type 0 209 1 1504 215 159 2 chr15 27617182 27617610 -58078144 + L1ME3 LINE L1 5667 6161 -1 2083 154 0 0 chr15 27618121 27618427 -58077327 + AluSx SINE Alu 1 306 -6 244 235 74 0 chr15 27618447 27618528 -58077226 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 256 195 156 0 chr15 27619402 27619479 -58076275 + L2 LINE L2 3142 3230 -42 245 328 130 6 chr15 27619523 27619700 -58076054 + MIR3 SINE MIR 10 208 0 2318 112 3 0 chr15 27619767 27620071 -58075683 + AluSx SINE Alu 1 305 -7 232 309 25 25 chr15 27621226 27621307 -58074447 + MIR SINE MIR 27 107 -155 2409 86 0 3 chr15 27621627 27621930 -58073824 + AluSc SINE Alu 1 302 -7 2203 122 0 0 chr15 27621936 27622232 -58073522 + AluSx SINE Alu 3 298 -14 629 236 35 6 chr15 27622552 27622726 -58073028 + MER5A DNA MER1_type 2 180 -9 530 169 19 104 chr15 27622731 27622815 -58072939 + L1MB4 LINE L1 6040 6107 -73 2292 81 3 23 chr15 27622815 27623123 -58072631 - AluSq SINE Alu -10 303 2 530 169 19 104 chr15 27623123 27623192 -58072562 + L1MB4 LINE L1 6107 6180 0 311 265 148 49 chr15 27623228 27623390 -58072364 + MER5B DNA MER1_type 1 178 0 628 308 88 13 chr15 27623406 27623724 -58072030 + L3 LINE CR1 1232 1573 -4 1171 168 0 5 chr15 27623951 27624148 -58071606 + MER3 DNA MER1_type 14 209 0 931 263 12 8 chr15 27625117 27625368 -58070386 + MIR SINE MIR 8 259 -3 1795 160 0 33 chr15 27625837 27625979 -58069775 + AluJo SINE Alu 1 129 -183 2190 128 3 0 chr15 27625979 27626283 -58069471 + AluSx SINE Alu 1 305 -7 1795 160 0 33 chr15 27626283 27626440 -58069314 + AluJo SINE Alu 129 290 -22 536 247 51 0 chr15 27627274 27627432 -58068322 + L1MA8 LINE L1 6126 6291 0 2017 125 0 4 chr15 27628425 27628733 -58067021 + AluSg SINE Alu 1 307 0 264 315 11 11 chr15 27628759 27628848 -58066906 - MER102a DNA MER1_type -1 329 241 385 60 0 0 chr15 27628924 27628974 -58066780 + HY4 scRNA scRNA 23 72 -21 335 299 76 7 chr15 27629019 27629163 -58066591 - MER102a DNA MER1_type -172 158 5 912 143 0 0 chr15 27630715 27630848 -58064906 + FLAM_A SINE Alu 1 133 0 200 258 0 61 chr15 27630908 27630974 -58064780 - L2 LINE L2 0 3272 3211 372 178 14 0 chr15 27631010 27631083 -58064671 - MER5A DNA MER1_type -115 74 1 414 267 30 0 chr15 27631338 27631439 -58064315 - MIR3 SINE MIR -31 177 74 855 163 31 66 chr15 27631490 27631686 -58064068 + MER5A DNA MER1_type 1 189 0 833 203 11 11 chr15 27631812 27631989 -58063765 + MER5B DNA MER1_type 1 177 -1 1444 176 87 7 chr15 27632021 27632163 -58063591 + AluJo SINE Alu 1 130 -182 1676 178 39 4 chr15 27632163 27632444 -58063310 + AluJb SINE Alu 1 291 -21 1444 176 87 7 chr15 27632444 27632590 -58063164 + AluJo SINE Alu 130 312 0 3104 169 13 2 chr15 27632617 27633154 -58062600 + MER67A LTR ERV1 1 543 0 594 267 14 0 chr15 27635246 27635392 -58060362 + MER91A DNA MER1_type 49 196 0 983 138 25 0 chr15 27635539 27635698 -58060056 + L1MB4 LINE L1 6012 6174 -6 1817 159 3 34 chr15 27635962 27636282 -58059472 - AluJo SINE Alu -2 310 1 1541 116 0 58 chr15 27636367 27636608 -58059146 - 7SLRNA srpRNA srpRNA -93 227 1 817 205 115 0 chr15 27636850 27637050 -58058704 + MER58A DNA MER1_type 1 223 -1 288 53 0 0 chr15 27637066 27637104 -58058650 + (ATG)n Simple_repeat Simple_repeat 3 40 0 200 149 21 0 chr15 27637119 27637166 -58058588 + GA-rich Low_complexity Low_complexity 3 50 0 374 256 82 87 chr15 27637169 27637289 -58058465 - MIR SINE MIR -13 249 129 1806 176 13 3 chr15 27637289 27637591 -58058163 + AluJb SINE Alu 1 305 -7 374 256 82 87 chr15 27637591 27637665 -58058089 - MIR SINE MIR -133 129 56 2120 188 27 11 chr15 27638626 27639068 -58056686 + L1MA3 LINE L1 5853 6301 -4 201 328 33 0 chr15 27639328 27639389 -58056365 + L2 LINE L2 3170 3232 -40 414 235 114 30 chr15 27640427 27640593 -58055161 + MIR SINE MIR 4 183 -79 795 255 26 22 chr15 27642714 27642945 -58052809 - MIR SINE MIR -24 238 7 504 267 133 13 chr15 27642990 27643213 -58052541 - MIR SINE MIR -8 254 10 1244 109 0 6 chr15 27643362 27643537 -58052217 + AluSc SINE Alu 135 308 -1 763 259 88 4 chr15 27645462 27645690 -58050064 + MER112 DNA MER1_type 8 254 -6 351 0 0 0 chr15 27646413 27646452 -58049302 + (TC)n Simple_repeat Simple_repeat 2 40 0 204 97 0 0 chr15 27646451 27646482 -58049272 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 219 272 136 19 chr15 27646755 27646858 -58048896 + MIR SINE MIR 34 148 -60 198 135 0 0 chr15 27647183 27647201 -58048553 + (TAA)n Simple_repeat Simple_repeat 3 20 -19 1737 136 47 14 chr15 27647201 27647480 -58048274 + AluJo SINE Alu 1 288 -24 198 135 0 0 chr15 27647480 27647498 -58048256 + (TAA)n Simple_repeat Simple_repeat 19 39 0 353 321 43 31 chr15 27647557 27647719 -58048035 - MIR SINE MIR -79 183 20 * 537 287 33 25 chr15 27647653 27647840 -58047914 + MIR SINE MIR 10 191 -32 1899 154 10 0 chr15 27648067 27648360 -58047394 - AluJb SINE Alu -16 296 1 249 333 0 0 chr15 27648381 27648462 -58047292 - MIR SINE MIR -68 194 114 397 290 109 44 chr15 27649759 27649942 -58045812 + MIR SINE MIR 15 209 -53 2386 71 0 10 chr15 27650553 27650849 -58044905 + AluY SINE Alu 1 293 -18 213 308 33 33 chr15 27651531 27651622 -58044132 + MIR3 SINE MIR 1 91 -117 308 287 160 13 chr15 27651624 27651694 -58044060 + MER69A DNA AcHobo 6 64 -2462 2130 123 0 3 chr15 27651694 27651994 -58043760 - AluSg SINE Alu -11 299 1 308 287 160 13 chr15 27651994 27652073 -58043681 + MER69A DNA AcHobo 64 177 0 228 156 219 0 chr15 27652074 27652138 -58043616 + MIR SINE MIR 107 184 -78 336 241 56 28 chr15 27652320 27652428 -58043326 - MIR SINE MIR -70 192 82 945 114 0 50 chr15 27653175 27653315 -58042439 + FLAM_C SINE Alu 1 133 0 2501 61 3 0 chr15 27653389 27653685 -58042069 - AluSp SINE Alu -16 297 1 572 241 140 27 chr15 27653897 27654107 -58041647 + MIR SINE MIR 2 237 -25 2090 77 4 0 chr15 27655195 27655454 -58040300 + AluY SINE Alu 1 260 -51 185 284 54 40 chr15 27656085 27656159 -58039595 + L2 LINE L2 3238 3312 -1 255 213 0 0 chr15 27656784 27656831 -58038923 + L2 LINE L2 3265 3311 -2 464 265 85 90 chr15 27658144 27658310 -58037444 + L2 LINE L2 2035 2200 -1114 2239 116 0 0 chr15 27658310 27658612 -58037142 - AluSx SINE Alu -10 302 1 464 265 85 90 chr15 27658612 27658845 -58036909 + L2 LINE L2 2200 2432 -882 337 181 21 0 chr15 27658845 27658939 -58036815 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 558 271 51 37 chr15 27658939 27659153 -58036601 + L2 LINE L2 2421 2637 -677 863 173 45 6 chr15 27659153 27659309 -58036445 - LTR35 LTR ERV1 0 618 457 2909 182 62 11 chr15 27659360 27659970 -58035784 + L1MB8 LINE L1 5428 6068 -110 1077 106 0 0 chr15 27659971 27660170 -58035584 - AluSg/x SINE Alu 0 338 140 715 193 7 0 chr15 27660170 27660310 -58035444 + L1MB7 LINE L1 6044 6184 0 1982 117 68 31 chr15 27660436 27660788 -58034966 + L1MA4 LINE L1 5925 6289 -11 1547 191 9 49 chr15 27660818 27661143 -58034611 - AluJb SINE Alu 0 312 1 26 30 0 0 chr15 27661252 27661285 -58034469 + AT_rich Low_complexity Low_complexity 1 33 0 318 327 80 50 chr15 27661571 27662131 -58033623 + L1ME3 LINE L1 4475 5051 -1095 582 134 52 0 chr15 27662149 27662246 -58033508 + L1MA10 LINE L1 6226 6327 -7 2033 120 3 20 chr15 27662479 27662780 -58032974 + AluJb SINE Alu 1 296 -16 642 233 246 36 chr15 27662789 27663119 -58032635 - L1MC4a LINE L1 -1828 5980 5582 462 314 61 33 chr15 27663139 27663384 -58032370 - MIR SINE MIR -9 253 2 2404 93 0 6 chr15 27663828 27664141 -58031613 + AluSq SINE Alu 1 311 -2 623 283 125 36 chr15 27664248 27664444 -58031310 + L1ME3 LINE L1 5255 5432 -730 2308 98 3 0 chr15 27664444 27664740 -58031014 - AluSp SINE Alu -16 297 1 623 283 125 36 chr15 27664740 27665178 -58030576 + L1ME3 LINE L1 5432 5949 -213 2126 105 7 0 chr15 27665786 27666071 -58029683 + AluSx SINE Alu 1 287 -25 532 184 0 0 chr15 27667157 27667244 -58028510 - Tigger5 DNA MER2_type 0 2323 2237 331 200 0 0 chr15 27667254 27667309 -58028445 - Tigger5 DNA MER2_type -2268 55 1 22 70 0 0 chr15 27667514 27667557 -58028197 + AT_rich Low_complexity Low_complexity 1 43 0 413 189 160 19 chr15 27667727 27667833 -58027921 - MER105 DNA DNA -83 121 1 261 246 56 0 chr15 27671321 27671419 -58024335 - MIR SINE MIR -69 139 72 183 42 0 0 chr15 27672468 27672492 -58023262 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 27672514 27672548 -58023206 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 776 247 0 0 chr15 27672552 27672710 -58023044 - FAM SINE Alu -17 158 1 1034 180 28 0 chr15 27672978 27673156 -58022598 - AluJo SINE Alu -14 298 116 1719 171 20 0 chr15 27673165 27673463 -58022291 - AluJo SINE Alu -8 304 1 1758 263 74 41 chr15 27673484 27673542 -58022212 - L1ME3A LINE L1 -82 6084 6029 2221 97 13 0 chr15 27673542 27673840 -58021914 + AluSq SINE Alu 1 302 -11 1758 263 74 41 chr15 27673840 27674629 -58021125 - L1ME3A LINE L1 -137 6029 5255 1860 108 8 8 chr15 27674651 27674911 -58020843 + AluSq SINE Alu 37 296 -17 719 312 55 21 chr15 27674916 27675591 -58020163 - L1MEd LINE L1 -4863 1256 464 1995 146 14 0 chr15 27675918 27676212 -58019542 + AluSx SINE Alu 1 298 -14 2137 106 27 7 chr15 27676665 27676958 -58018796 - AluSx SINE Alu -13 299 1 760 204 83 6 chr15 27677069 27677226 -58018528 - MER20 DNA MER1_type -4 215 47 248 302 219 0 chr15 27677451 27677547 -58018207 - L3 LINE CR1 -80 1497 1381 21 71 0 0 chr15 27677829 27677871 -58017883 + AT_rich Low_complexity Low_complexity 1 42 0 338 297 63 57 chr15 27678349 27678524 -58017230 - MIR SINE MIR -62 200 25 216 167 0 0 chr15 27679025 27679067 -58016687 - L2 LINE L2 0 3313 3272 25 31 0 0 chr15 27679545 27679577 -58016177 + AT_rich Low_complexity Low_complexity 1 32 0 435 207 130 57 chr15 27679627 27679873 -58015881 - L1MC4a LINE L1 -1769 6039 5776 1564 141 8 8 chr15 27679975 27680237 -58015517 - Tigger6 DNA MER2_type -1 1596 1335 1852 112 40 40 chr15 27680493 27680814 -58014940 + MLT1B LTR MaLR 1 321 -69 1783 166 7 20 chr15 27681192 27681493 -58014261 - AluJo SINE Alu -5 307 11 1207 194 0 5 chr15 27681972 27682188 -58013566 - AluJo SINE Alu -11 301 87 24 0 0 0 chr15 27682573 27682597 -58013157 + AT_rich Low_complexity Low_complexity 1 24 0 1708 181 13 19 chr15 27682908 27683217 -58012537 - AluJo SINE Alu -5 307 1 2049 141 0 3 chr15 27683455 27683753 -58012001 + AluSx SINE Alu 1 297 -15 568 194 194 24 chr15 27684094 27684305 -58011449 + L1ME3A LINE L1 5678 5924 -240 254 253 0 13 chr15 27684353 27684428 -58011326 + L1ME3A LINE L1 6089 6162 -8 853 246 97 56 chr15 27684428 27684470 -58011284 + L1MC4 LINE L1 6993 7032 -1010 2191 92 7 36 chr15 27684470 27684773 -58010981 - AluSg SINE Alu -16 294 1 853 246 97 56 chr15 27684773 27684797 -58010957 + L1MC4 LINE L1 7032 7054 -988 1851 160 3 0 chr15 27684797 27685084 -58010670 + AluJb SINE Alu 13 300 -12 853 246 97 56 chr15 27685084 27685203 -58010551 + L1MC4 LINE L1 7054 7167 -875 2129 68 68 7 chr15 27685203 27685495 -58010259 + AluY SINE Alu 1 310 -1 853 246 97 56 chr15 27685495 27685791 -58009963 + L1MC4 LINE L1 7167 7496 -546 547 289 75 36 chr15 27685795 27685989 -58009765 + L1MC4 LINE L1 7709 7921 -121 246 62 0 0 chr15 27685989 27686021 -58009733 + (TG)n Simple_repeat Simple_repeat 2 33 0 547 289 75 36 chr15 27686021 27686131 -58009623 + L1MC4 LINE L1 7921 8025 -17 2186 105 7 10 chr15 27687386 27687691 -58008063 + AluY SINE Alu 1 304 -7 429 299 98 33 chr15 27688434 27688648 -58007106 + L2 LINE L2 2827 3054 -218 227 308 41 103 chr15 27689695 27689841 -58005913 + MIR SINE MIR 11 147 -115 2183 132 0 0 chr15 27690054 27690358 -58005396 - AluSx SINE Alu -4 308 5 2077 118 0 10 chr15 27690367 27690664 -58005090 - AluSg SINE Alu -15 295 2 305 93 0 198 chr15 27690683 27690718 -58005036 + HsTC2 DNA Tc2 231 241 -1657 1840 134 29 4 chr15 27690718 27690995 -58004759 + AluSg SINE Alu 5 288 -22 305 93 0 198 chr15 27690995 27691045 -58004709 + HsTC2 DNA Tc2 241 299 -1599 707 247 135 68 chr15 27691058 27691231 -58004523 + HsTC2 DNA Tc2 513 673 -1225 1839 183 20 0 chr15 27691231 27691537 -58004217 - AluJb SINE Alu 0 312 1 707 247 135 68 chr15 27691537 27691748 -58004006 + HsTC2 DNA Tc2 673 923 -975 2168 138 3 0 chr15 27691822 27692133 -58003621 + AluSx SINE Alu 1 312 0 358 248 26 26 chr15 27692187 27692304 -58003450 + MIR SINE MIR 146 262 0 2333 79 3 0 chr15 27692559 27692850 -58002904 - AluSp SINE Alu -21 292 1 1719 175 37 14 chr15 27692961 27693258 -58002496 - AluJb SINE Alu -8 304 1 2316 105 0 13 chr15 27693580 27693895 -58001859 - AluSx SINE Alu -1 311 1 737 179 0 8 chr15 27694797 27694931 -58000823 + FLAM_A SINE Alu 1 133 0 22 35 0 0 chr15 27695410 27695439 -58000315 + AT_rich Low_complexity Low_complexity 1 29 0 2182 126 0 3 chr15 27695511 27695820 -57999934 + AluSx SINE Alu 1 308 -4 898 124 31 0 chr15 27696417 27696546 -57999208 + AluJb SINE Alu 1 133 -179 2359 95 13 0 chr15 27696552 27696857 -57998897 + AluSg SINE Alu 1 309 -1 2419 92 0 3 chr15 27697579 27697885 -57997869 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 27698424 27698448 -57997306 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 27698470 27698504 -57997250 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 943 196 0 0 chr15 27698508 27698666 -57997088 - FAM SINE Alu -17 158 1 977 179 34 6 chr15 27698934 27699113 -57996641 - AluJo SINE Alu -13 299 116 250 167 0 33 chr15 27699122 27699182 -57996572 - Alu SINE Alu -1 301 244 347 278 0 11 chr15 27699370 27699460 -57996294 - MER112 DNA MER1_type -1 259 171 2411 39 4 0 chr15 27699664 27699967 -57995787 - AluY SINE Alu 0 305 2 215 127 36 18 chr15 27700002 27700057 -57995697 + (CATCT)n Simple_repeat Simple_repeat 5 60 0 478 250 59 166 chr15 27700065 27700317 -57995437 + L2 LINE L2 2819 2990 -323 2274 90 0 3 chr15 27700317 27700606 -57995148 - AluSc SINE Alu -21 288 1 478 250 59 166 chr15 27700606 27700865 -57994889 + L2 LINE L2 2990 3275 -38 2154 89 11 0 chr15 27701342 27701622 -57994132 + AluSp SINE Alu 15 297 -16 206 135 27 0 chr15 27701799 27701836 -57993918 - L2 LINE L2 -1061 2253 2216 1294 151 49 18 chr15 27702121 27702346 -57993408 + AluJb SINE Alu 67 298 -14 2443 64 0 0 chr15 27702480 27702778 -57992976 - AluY SINE Alu -11 300 3 186 321 14 114 chr15 27703010 27703150 -57992604 - L2 LINE L2 -2010 1304 1179 465 135 0 0 chr15 27703291 27703365 -57992389 - MLT1A1 LTR MaLR -1 364 291 287 136 0 17 chr15 27703361 27703420 -57992334 - FLAM_A SINE Alu 0 133 76 * 1281 185 38 35 chr15 27703429 27703560 -57992194 - MLT1A1 LTR MaLR -77 288 159 2216 101 0 7 chr15 27703560 27703857 -57991897 - AluSg SINE Alu -15 295 1 1281 185 38 35 chr15 27703857 27704012 -57991742 - MLT1A1 LTR MaLR -206 159 1 36 0 0 0 chr15 27704158 27704194 -57991560 + AT_rich Low_complexity Low_complexity 1 36 0 748 124 0 0 chr15 27704194 27704299 -57991455 - U6 snRNA snRNA -2 105 1 2295 108 0 0 chr15 27704543 27704840 -57990914 + AluSx SINE Alu 1 297 -15 338 257 72 72 chr15 27704841 27704993 -57990761 + L1MC/D LINE L1 5602 5753 -2055 211 268 14 14 chr15 27705037 27705108 -57990646 + (TA)n Simple_repeat Simple_repeat 1 71 0 360 283 79 28 chr15 27705483 27705773 -57989981 - L1MC4 LINE L1 -617 7425 7121 1509 259 131 54 chr15 27705919 27706835 -57988919 - L1MC4a LINE L1 -874 6934 5921 1968 152 10 3 chr15 27706835 27707132 -57988622 - AluJb SINE Alu -13 299 1 1509 259 131 54 chr15 27707132 27707294 -57988460 - L1MC4a LINE L1 -1887 5921 5773 510 292 16 52 chr15 27707744 27707994 -57987760 - L2 LINE L2 -104 3209 2969 365 311 81 60 chr15 27708009 27708292 -57987462 + LTR67 LTR ERVL 12 300 -257 299 216 27 0 chr15 27708293 27708367 -57987387 + LTR67 LTR ERVL 478 553 -4 581 384 66 15 chr15 27708368 27708701 -57987053 - L2 LINE L2 -398 2916 2567 399 277 52 56 chr15 27708707 27708789 -57986965 - L1MEd LINE L1 -4123 2187 2106 2317 118 0 6 chr15 27708789 27709103 -57986651 - AluSx SINE Alu 0 312 1 399 277 52 56 chr15 27709103 27709251 -57986503 - L1MEd LINE L1 -4204 2106 1958 716 251 128 26 chr15 27709289 27709672 -57986082 + L1MC5 LINE L1 7492 7913 -48 437 175 84 84 chr15 27710012 27710112 -57985642 - MER3 DNA MER1_type -19 143 41 1173 173 30 133 chr15 27710112 27710442 -57985312 + AluJo SINE Alu 1 296 -6 437 175 84 84 chr15 27710442 27710484 -57985270 - MER3 DNA MER1_type -120 42 1 815 268 78 60 chr15 27710528 27710675 -57985079 - L1MEd LINE L1 -4734 1576 1433 2350 109 0 3 chr15 27710675 27710987 -57984767 + AluSq SINE Alu 1 311 -2 815 268 78 60 chr15 27710987 27711426 -57984328 - L1MEd LINE L1 -4877 1433 1003 1494 173 8 8 chr15 27711426 27711669 -57984085 - AluJb SINE Alu 0 312 70 815 268 78 60 chr15 27711669 27712025 -57983729 - L1MEd LINE L1 -5307 1003 573 2342 102 3 0 chr15 27712546 27712850 -57982904 + AluSg SINE Alu 1 305 -5 966 131 77 77 chr15 27712917 27712998 -57982756 + Tigger2 DNA MER2_type 1 81 -2637 2147 122 0 10 chr15 27712998 27713302 -57982452 + AluSx SINE Alu 1 301 -11 966 131 77 77 chr15 27713302 27713346 -57982408 + Tigger2 DNA MER2_type 81 124 -2594 1457 159 83 43 chr15 27713346 27713622 -57982132 + AluJo SINE Alu 6 292 -20 966 131 77 77 chr15 27713622 27713754 -57982000 + Tigger2 DNA MER2_type 123 259 -2459 1092 157 0 0 chr15 27713827 27713986 -57981768 + AluJb SINE Alu 136 294 -18 522 83 0 0 chr15 27713987 27714059 -57981695 + (TA)n Simple_repeat Simple_repeat 1 72 0 1764 158 0 29 chr15 27714408 27714719 -57981035 + AluJb SINE Alu 1 302 -10 2321 109 0 0 chr15 27714966 27715269 -57980485 - AluSx SINE Alu -9 303 1 1776 140 15 0 chr15 27715434 27715699 -57980055 - AluJb SINE Alu -43 269 1 1784 146 32 65 chr15 27715818 27715950 -57979804 + AluSx SINE Alu 1 136 -176 1907 144 3 50 chr15 27715950 27716269 -57979485 + AluSx SINE Alu 1 304 -8 1784 146 32 65 chr15 27716269 27716445 -57979309 + AluSx SINE Alu 136 299 -13 1632 191 25 14 chr15 27716894 27717250 -57978504 + MLT1A1 LTR MaLR 6 365 0 216 0 0 0 chr15 27717477 27717501 -57978253 + (A)n Simple_repeat Simple_repeat 1 24 0 382 190 69 26 chr15 27717504 27717620 -57978134 - L1MC4a LINE L1 -1899 5909 5789 302 258 33 17 chr15 27717616 27717736 -57978018 - L1P4 LINE L1 -725 5440 5319 * 27 62 0 0 chr15 27717912 27717960 -57977794 + AT_rich Low_complexity Low_complexity 1 48 0 2316 84 7 3 chr15 27718109 27718407 -57977347 + AluSp SINE Alu 1 299 -14 277 342 83 38 chr15 27718810 27719050 -57976704 + L2 LINE L2 2820 3070 -202 403 290 109 44 chr15 27720079 27720262 -57975492 - MIR SINE MIR -53 209 15 229 231 29 58 chr15 27721195 27721368 -57974386 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 23 54 0 0 chr15 27721394 27721431 -57974323 + AT_rich Low_complexity Low_complexity 1 37 0 2316 84 7 3 chr15 27721580 27721878 -57973876 + AluSp SINE Alu 1 299 -14 194 360 88 38 chr15 27722281 27722520 -57973234 + L2 LINE L2 2820 3070 -202 1692 177 0 23 chr15 27723099 27723404 -57972350 + AluJb SINE Alu 1 298 -14 682 236 35 6 chr15 27723724 27723898 -57971856 + MER5A DNA MER1_type 2 180 -9 474 169 19 104 chr15 27723903 27723987 -57971767 + L1MB4 LINE L1 6040 6107 -73 2259 81 3 23 chr15 27723987 27724294 -57971460 - AluSq SINE Alu -11 302 2 474 169 19 104 chr15 27724294 27724363 -57971391 + L1MB4 LINE L1 6107 6180 0 434 292 87 18 chr15 27725144 27725254 -57970500 - L1MC4 LINE L1 -17 8025 7924 246 62 0 0 chr15 27725254 27725286 -57970468 + (CA)n Simple_repeat Simple_repeat 2 33 0 434 292 87 18 chr15 27725286 27725394 -57970360 - L1MC4 LINE L1 -118 7924 7792 1913 174 0 0 chr15 27726402 27726713 -57969041 + AluSx SINE Alu 1 311 -1 180 295 248 0 chr15 27726870 27726999 -57968755 + L3 LINE CR1 1317 1477 -100 569 250 157 23 chr15 27727239 27727455 -57968299 + MIR SINE MIR 17 261 -1 280 231 46 0 chr15 27727464 27727529 -57968225 + L2 LINE L2 3246 3313 0 1531 177 26 0 chr15 27727940 27728206 -57967548 - AluJo SINE Alu -39 273 1 339 285 6 95 chr15 27728227 27728285 -57967469 - L1ME2 LINE L1 -83 6064 6002 2217 97 13 0 chr15 27728285 27728583 -57967171 + AluSq SINE Alu 1 302 -11 339 285 6 95 chr15 27728583 27728682 -57967072 - L1ME2 LINE L1 -145 6002 5921 1505 264 75 29 chr15 27728707 27729371 -57966383 - L1ME2 LINE L1 -219 5934 5240 1925 100 4 4 chr15 27729395 27729654 -57966100 + AluSg SINE Alu 37 295 -15 709 276 42 14 chr15 27729656 27730003 -57965751 - L1ME2 LINE L1 -4863 1256 971 484 316 58 11 chr15 27730084 27730274 -57965480 - L1ME2 LINE L1 -5401 718 520 599 206 0 74 chr15 27730720 27730909 -57964845 + L1MC5 LINE L1 7688 7862 -99 21 57 0 0 chr15 27730925 27730960 -57964794 + AT_rich Low_complexity Low_complexity 1 35 0 2227 121 0 0 chr15 27732025 27732331 -57963423 - AluSx SINE Alu -6 306 1 2001 135 10 0 chr15 27732635 27732931 -57962823 + AluSx SINE Alu 1 299 -13 1167 121 145 5 chr15 27733426 27733633 -57962121 + MER46A DNA MER2_type 1 236 0 894 138 0 0 chr15 27734001 27734131 -57961623 + AluSq/x SINE Alu 1 130 -182 281 70 47 0 chr15 27734131 27734174 -57961580 + Alu SINE Alu 249 293 -8 410 232 22 22 chr15 27734730 27734868 -57960886 - L1M4 LINE L1 -771 5375 5238 275 286 60 30 chr15 27735315 27735483 -57960271 + L1ME LINE L1 5524 5696 -425 2450 39 0 0 chr15 27736109 27736421 -57959333 - AluY SINE Alu 0 312 1 1961 238 126 16 chr15 27736459 27737070 -57958684 + MER20B DNA MER1_type 1 700 -83 1912 177 0 0 chr15 27737070 27737369 -57958385 - AluJb SINE Alu -12 300 2 1961 238 126 16 chr15 27737369 27737456 -57958298 + MER20B DNA MER1_type 700 776 -7 1793 113 67 18 chr15 27737731 27738014 -57957740 + AluSx SINE Alu 1 297 -15 295 238 0 12 chr15 27738554 27738638 -57957116 + L1ME LINE L1 5595 5677 -444 418 188 139 27 chr15 27738731 27738954 -57956800 - L1MC5 LINE L1 -32 7929 7682 2334 91 3 28 chr15 27739052 27739371 -57956383 + AluSq SINE Alu 1 311 -2 24 53 0 0 chr15 27739461 27739499 -57956255 + AT_rich Low_complexity Low_complexity 1 38 0 2512 54 0 0 chr15 27739566 27739863 -57955891 + AluY SINE Alu 1 297 -14 973 249 111 70 chr15 27740372 27741209 -57954545 + HAL1 LINE L1 1624 2494 -13 1387 163 16 8 chr15 27741226 27741484 -57954270 - L1PB4 LINE L1 -2 6154 5895 2227 88 0 7 chr15 27741497 27741781 -57953973 + AluSg SINE Alu 1 282 -28 249 91 0 0 chr15 27741748 27741781 -57953973 + Alu SINE Alu 250 305 0 208 0 0 0 chr15 27741781 27741804 -57953950 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 26 0 0 0 chr15 27742011 27742037 -57953717 + AT_rich Low_complexity Low_complexity 1 26 0 2316 101 0 0 chr15 27742105 27742401 -57953353 - AluSp SINE Alu -9 304 9 2265 150 65 96 chr15 27742486 27743007 -57952747 + MLT1D LTR MaLR 1 505 0 403 234 107 42 chr15 27743056 27743266 -57952488 - L1P3 LINE L1 -436 5736 5500 1254 114 0 0 chr15 27743494 27743660 -57952094 + AluSg/x SINE Alu 132 297 -13 1843 150 28 0 chr15 27744213 27744499 -57951255 + AluSx SINE Alu 1 294 -18 989 162 50 0 chr15 27744505 27744684 -57951070 + MER33 DNA MER1_type 7 194 -130 1825 168 0 10 chr15 27744686 27744977 -57950777 + AluJb SINE Alu 1 288 -24 540 206 0 47 chr15 27745015 27745122 -57950632 + AluJo SINE Alu 126 227 -85 431 250 0 0 chr15 27745428 27745524 -57950230 + MIR SINE MIR 93 188 -74 1354 167 4 49 chr15 27745547 27745811 -57949943 + AluJo SINE Alu 29 280 -32 45 16 0 16 chr15 27745811 27745862 -57949892 + AT_rich Low_complexity Low_complexity 1 52 -10 1827 172 7 10 chr15 27745862 27746159 -57949595 + AluJb SINE Alu 1 296 -16 45 16 0 16 chr15 27746159 27746170 -57949584 + AT_rich Low_complexity Low_complexity 52 62 0 202 222 0 0 chr15 27746186 27746231 -57949523 + MIR SINE MIR 218 262 0 287 284 55 18 chr15 27746286 27746395 -57949359 - MIR SINE MIR -79 183 71 2494 78 0 7 chr15 27746482 27746788 -57948966 - AluSx SINE Alu -8 304 1 263 287 82 33 chr15 27747258 27747380 -57948374 + MIR SINE MIR 19 146 -62 2521 72 0 0 chr15 27747468 27747772 -57947982 - AluY SINE Alu -7 304 1 2261 107 17 0 chr15 27747845 27748144 -57947610 - AluSx SINE Alu -8 304 1 1596 184 6 44 chr15 27748174 27748318 -57947436 + AluJb SINE Alu 1 149 -163 2329 93 0 13 chr15 27748318 27748628 -57947126 + AluSx SINE Alu 1 306 -6 1596 184 6 44 chr15 27748628 27748804 -57946950 + AluJb SINE Alu 149 309 -3 2282 93 0 3 chr15 27749336 27749625 -57946129 - AluSc SINE Alu -21 288 1 391 257 82 29 chr15 27749713 27749884 -57945870 + L2 LINE L2 3096 3275 -38 2198 98 10 0 chr15 27750361 27750656 -57945098 + AluSp SINE Alu 15 312 -1 194 135 27 0 chr15 27750818 27750855 -57944899 - L2 LINE L2 -1061 2253 2216 1292 151 49 18 chr15 27751140 27751365 -57944389 + AluJb SINE Alu 67 298 -14 2486 64 0 0 chr15 27751499 27751797 -57943957 - AluY SINE Alu -11 300 3 501 179 17 14 chr15 27752310 27752432 -57943322 - MLT1A1 LTR MaLR -1 380 267 311 136 0 17 chr15 27752380 27752439 -57943315 - FLAM_A SINE Alu 0 133 76 * 1405 181 38 41 chr15 27752442 27752579 -57943175 - MLT1A1 LTR MaLR -73 292 156 2242 101 0 7 chr15 27752579 27752876 -57942878 - AluSg SINE Alu -15 295 1 1405 181 38 41 chr15 27752876 27753031 -57942723 - MLT1A1 LTR MaLR -209 156 1 36 0 0 0 chr15 27753177 27753213 -57942541 + AT_rich Low_complexity Low_complexity 1 36 0 702 142 0 9 chr15 27753213 27753319 -57942435 - U6 snRNA snRNA -2 105 1 1799 145 45 10 chr15 27753564 27753853 -57941901 + AluSx SINE Alu 1 299 -13 1958 138 10 10 chr15 27754050 27754348 -57941406 - AluSx SINE Alu -14 298 1 2271 104 0 0 chr15 27754379 27754668 -57941086 + AluSc SINE Alu 1 289 -20 702 220 147 16 chr15 27754849 27755040 -57940714 + MER46C DNA MER2_type 12 227 -111 736 231 25 20 chr15 27755133 27755336 -57940418 - MIR SINE MIR -1 261 58 351 204 124 0 chr15 27755633 27755746 -57940008 - L1ME4a LINE L1 -21 6100 5974 293 217 133 56 chr15 27755787 27755967 -57939787 - L1ME4a LINE L1 -223 5898 5705 583 276 51 28 chr15 27755968 27756185 -57939569 + MIR SINE MIR 31 252 -10 646 282 165 12 chr15 27756432 27756772 -57938982 - L3 LINE CR1 -9 1568 1177 222 286 10 51 chr15 27756956 27757054 -57938700 - L3 LINE CR1 -464 1113 1020 1565 166 21 24 chr15 27757096 27757385 -57938369 + AluJb SINE Alu 5 292 -20 332 176 0 14 chr15 27757404 27757478 -57938276 + GA-rich Low_complexity Low_complexity 4 76 0 2228 113 0 3 chr15 27758134 27758434 -57937320 - AluSq SINE Alu -14 299 1 640 145 153 8 chr15 27759207 27759338 -57936416 + Charlie1b DNA MER1_type 130 279 -244 22 70 0 0 chr15 27760577 27760620 -57935134 + GC_rich Low_complexity Low_complexity 1 43 0 185 345 73 9 chr15 27762590 27762700 -57933054 - L2 LINE L2 -508 2806 2690 290 326 47 16 chr15 27762843 27763036 -57932718 - L2 LINE L2 -833 2481 2283 * 390 294 158 49 chr15 27763034 27763211 -57932543 - L2 LINE L2 -4 3309 3153 2061 112 18 0 chr15 27763211 27763497 -57932257 + AluSx SINE Alu 1 291 -21 390 294 158 49 chr15 27763497 27763748 -57932006 - L2 LINE L2 -160 3153 2834 2479 57 0 31 chr15 27763813 27764130 -57931624 + AluY SINE Alu 1 307 -4 197 295 221 0 chr15 27764140 27764262 -57931492 - L2 LINE L2 -727 2587 2439 1054 136 182 34 chr15 27764268 27764532 -57931222 - MER3 DNA MER1_type 0 2538 2236 257 250 98 18 chr15 27764535 27764647 -57931107 - MER3 DNA MER1_type -41 168 48 211 340 42 28 chr15 27764650 27764794 -57930960 - L2 LINE L2 -449 2865 2720 667 189 120 47 chr15 27764917 27765101 -57930653 + MER5C DNA MER1_type 1 170 -154 2256 112 0 3 chr15 27765101 27765405 -57930349 - AluSc SINE Alu -6 303 1 2352 99 6 6 chr15 27765407 27765720 -57930034 - AluSp SINE Alu 0 313 1 667 189 120 47 chr15 27765720 27765765 -57929989 + MER5C DNA MER1_type 170 250 -74 664 282 34 5 chr15 27765938 27766147 -57929607 - MIR SINE MIR -1 261 47 1808 146 11 14 chr15 27766388 27766668 -57929086 - AluJb SINE Alu -33 279 1 862 199 51 93 chr15 27766710 27766776 -57928978 + L1ME LINE L1 5258 5325 -855 2244 116 7 0 chr15 27766776 27767077 -57928677 + AluSx SINE Alu 1 303 -9 862 199 51 93 chr15 27767077 27767384 -57928370 + L1ME LINE L1 5325 5604 -576 1321 163 218 23 chr15 27767517 27767824 -57927930 + MSTB1 LTR MaLR 1 367 -65 227 373 34 11 chr15 27768441 27768618 -57927136 - L2 LINE L2 -960 2354 2174 185 243 153 27 chr15 27768672 27768783 -57926971 - MIR SINE MIR -6 256 132 183 163 0 23 chr15 27768913 27768956 -57926798 - L2 LINE L2 -1356 1958 1917 575 212 33 33 chr15 27769079 27769190 -57926564 + MER113 DNA MER1_type? 192 302 -219 1728 184 7 3 chr15 27769190 27769484 -57926270 - AluJb SINE Alu -17 295 1 575 212 33 33 chr15 27769484 27769599 -57926155 + MER113 DNA MER1_type? 302 521 0 361 93 0 0 chr15 27770700 27770754 -57925000 + Alu SINE Alu 249 302 0 263 287 82 33 chr15 27770845 27770967 -57924787 - MIR SINE MIR -62 146 19 2422 84 0 0 chr15 27771438 27771734 -57924020 + AluY SINE Alu 1 296 -15 1504 124 49 0 chr15 27772180 27772405 -57923349 - AluJb SINE Alu -1 311 76 443 190 120 0 chr15 27772991 27773091 -57922663 + MER3 DNA MER1_type 32 143 -66 841 251 128 26 chr15 27773431 27773814 -57921940 - L1MC5 LINE L1 -48 7913 7492 414 271 65 61 chr15 27773852 27774000 -57921754 + L1MEc LINE L1 2044 2195 -4201 2290 117 0 16 chr15 27774000 27774316 -57921438 + AluSx SINE Alu 1 311 -1 414 271 65 61 chr15 27774316 27774396 -57921358 + L1MEc LINE L1 2195 2273 -4123 475 375 68 18 chr15 27774402 27774682 -57921072 + L2 LINE L2 2567 2860 -454 288 189 54 27 chr15 27774736 27774810 -57920944 - LTR67 LTR ERVL -4 553 478 472 301 115 11 chr15 27775562 27775960 -57919794 - L1ME3 LINE L1 -303 5818 5466 2180 137 0 3 chr15 27775963 27776276 -57919478 + AluSx SINE Alu 1 312 0 315 248 26 26 chr15 27776330 27776447 -57919307 + MIR SINE MIR 146 262 0 2237 100 7 0 chr15 27776702 27776992 -57918762 - AluSq SINE Alu -21 292 1 2352 99 6 6 chr15 27776994 27777307 -57918447 - AluSp SINE Alu 0 313 1 1264 222 3 11 chr15 27777814 27778098 -57917656 - AluY SINE Alu -10 301 20 1632 120 0 24 chr15 27778135 27778385 -57917369 + AluSq SINE Alu 68 311 -2 1629 179 6 26 chr15 27778401 27778713 -57917041 + AluJo SINE Alu 7 312 0 2085 147 0 7 chr15 27778719 27779026 -57916728 + AluSx SINE Alu 1 305 -7 492 160 21 0 chr15 27779036 27779130 -57916624 + L1MC1 LINE L1 5187 5282 -864 997 120 8 0 chr15 27779131 27779264 -57916490 + AluSq/x SINE Alu 1 134 -178 291 158 99 59 chr15 27779265 27779366 -57916388 + L1MC1 LINE L1 5263 5367 -966 2392 92 0 10 chr15 27779367 27779681 -57916073 + AluY SINE Alu 1 311 0 2103 127 6 19 chr15 27779700 27780016 -57915738 + AluSx SINE Alu 1 312 0 585 124 0 34 chr15 27780046 27780135 -57915619 + AluS SINE Alu 2 87 -225 1753 135 5 158 chr15 27780136 27780567 -57915187 + L1MC1 LINE L1 5368 5732 -2263 2150 92 13 28 chr15 27780575 27780892 -57914862 - AluSp SINE Alu -1 312 1 435 216 39 39 chr15 27781066 27781219 -57914535 - AluSq SINE Alu -87 226 74 3087 120 95 51 chr15 27781371 27781499 -57914255 + L1MC1 LINE L1 5718 5839 -494 2457 90 0 3 chr15 27781499 27781810 -57913944 + AluSq SINE Alu 1 310 -3 3087 120 95 51 chr15 27781810 27781910 -57913844 + L1MC1 LINE L1 5839 5933 -400 1769 92 134 8 chr15 27781910 27782172 -57913582 + AluSc SINE Alu 1 295 -14 3087 120 95 51 chr15 27782172 27782532 -57913222 + L1MC1 LINE L1 5933 6333 0 252 156 0 0 chr15 27782540 27782585 -57913169 - Charlie1 DNA MER1_type -56 2705 2661 300 180 0 0 chr15 27782585 27782635 -57913119 - L1MC1 LINE L1 -27 6306 6257 285 129 0 0 chr15 27782680 27782742 -57913012 + Charlie1 DNA MER1_type 2523 2584 -177 2289 89 3 0 chr15 27782781 27783095 -57912659 - AluSp SINE Alu 0 313 2 222 37 0 0 chr15 27783101 27783128 -57912626 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2194 86 31 14 chr15 27783130 27783421 -57912333 - AluSc SINE Alu -13 296 1 1741 169 0 29 chr15 27783445 27783758 -57911996 + AluJb SINE Alu 1 304 -8 1056 195 31 5 chr15 27783758 27783953 -57911801 + MER21A-int LTR ERV1 1521 1720 -2471 13281 152 30 36 chr15 27783957 27784902 -57910852 + MER21A-int LTR ERV1 1838 2787 -1404 207 0 0 0 chr15 27784902 27784925 -57910829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13281 152 30 36 chr15 27784925 27784937 -57910817 + MER21A-int LTR ERV1 2787 2798 -1393 2273 57 7 57 chr15 27784937 27785238 -57910516 - AluY SINE Alu -25 286 1 13281 152 30 36 chr15 27785238 27785519 -57910235 + MER21A-int LTR ERV1 2798 3079 -1112 2425 79 0 0 chr15 27785519 27785810 -57909944 + AluSg SINE Alu 1 291 -19 240 35 0 0 chr15 27785810 27785839 -57909915 + (TA)n Simple_repeat Simple_repeat 2 30 0 13281 152 30 36 chr15 27785839 27786964 -57908790 + MER21A-int LTR ERV1 3077 4191 0 1151 139 166 5 chr15 27786969 27787192 -57908562 + MER21A LTR ERV1 6 264 -667 827 102 0 2 chr15 27787224 27787471 -57908283 + AluSx SINE Alu 1 295 -14 946 189 97 0 chr15 27787471 27787646 -57908108 + MER21B LTR ERV1 308 499 -364 816 133 126 0 chr15 27787639 27787782 -57907972 - Charlie1b DNA MER1_type -228 295 135 * 225 0 0 0 chr15 27787782 27787807 -57907947 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2242 96 0 0 chr15 27787807 27788087 -57907667 - AluSx SINE Alu -32 280 1 2053 88 39 59 chr15 27788087 27788393 -57907361 - AluSx SINE Alu -12 300 1 1046 105 46 0 chr15 27788393 27788546 -57907208 + MER50 LTR ERV1 566 725 -9 531 147 128 29 chr15 27788546 27788648 -57907106 + FLAM_A SINE Alu 21 132 -10 558 138 153 43 chr15 27788648 27788902 -57906852 - Zaphod DNA AcHobo -3066 965 684 307 267 47 0 chr15 27788902 27788988 -57906766 - L1MC4 LINE L1 -1339 6703 6614 * 357 267 0 0 chr15 27788936 27789026 -57906728 + L1MC4 LINE L1 6614 6703 -1339 2256 48 0 8 chr15 27789029 27789297 -57906457 - AluY SINE Alu -9 302 37 2091 121 0 0 chr15 27789473 27789746 -57906008 + AluSx SINE Alu 16 288 -24 333 307 11 0 chr15 27789759 27789847 -57905907 + Charlie1 DNA MER1_type 1 89 -2672 628 119 88 126 chr15 27789848 27789890 -57905864 - MER46A DNA MER2_type -2496 235 193 2091 97 4 7 chr15 27789890 27790168 -57905586 + AluSq SINE Alu 20 296 -17 628 119 88 126 chr15 27790168 27790284 -57905470 - MER46A DNA MER2_type -2538 193 83 1863 109 102 11 chr15 27790302 27790586 -57905168 + AluSq SINE Alu 1 310 -3 364 176 55 44 chr15 27790586 27790666 -57905088 - MER50 LTR ERV1 -162 572 489 2315 78 7 7 chr15 27790670 27791018 -57904736 - AluSq SINE Alu 0 313 1 1019 206 57 24 chr15 27791018 27791265 -57904489 - MER50 LTR ERV1 -470 264 10 2398 72 0 7 chr15 27791310 27791614 -57904140 - AluY SINE Alu -9 302 1 1257 205 28 64 chr15 27791639 27791904 -57903850 + Zaphod DNA AcHobo 3595 3868 -163 2119 119 3 22 chr15 27791904 27792216 -57903538 - AluSx SINE Alu -6 306 1 1257 205 28 64 chr15 27792216 27792281 -57903473 + Zaphod DNA AcHobo 3868 3911 -120 2515 58 0 3 chr15 27792281 27792576 -57903178 + AluY SINE Alu 1 294 -17 1257 205 28 64 chr15 27792576 27792635 -57903119 + Zaphod DNA AcHobo 3911 3971 -60 2075 132 0 16 chr15 27792635 27792939 -57902815 + AluSx SINE Alu 1 299 -13 342 295 0 0 chr15 27792979 27793057 -57902697 + MER115 DNA AcHobo 616 693 0 827 127 0 0 chr15 27793602 27793720 -57902034 + FLAM_C SINE Alu 1 118 -25 2244 113 0 3 chr15 27793741 27794043 -57901711 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr15 27794043 27794066 -57901688 + (TA)n Simple_repeat Simple_repeat 2 24 0 1966 144 3 10 chr15 27794521 27794826 -57900928 + AluSx SINE Alu 1 303 -9 408 160 40 0 chr15 27794973 27795048 -57900706 - MER116 DNA Mariner -2 78 1 2334 81 0 0 chr15 27795107 27795392 -57900362 + AluSc SINE Alu 1 285 -24 1229 92 92 6 chr15 27795404 27795578 -57900176 - AluSx SINE Alu -123 189 1 1749 199 16 48 chr15 27795633 27796010 -57899744 + MLT1A1 LTR MaLR 1 365 0 1711 79 19 0 chr15 27796132 27796348 -57899406 + AluY SINE Alu 1 220 -91 213 39 0 0 chr15 27796364 27796390 -57899364 + (A)n Simple_repeat Simple_repeat 1 26 0 2168 108 14 0 chr15 27796547 27796844 -57898910 - AluSc SINE Alu -8 301 1 2052 114 30 3 chr15 27796845 27797144 -57898610 - AluSq SINE Alu -6 307 1 248 237 212 8 chr15 27797605 27797723 -57898031 + L1ME4a LINE L1 5840 5981 -140 563 372 21 5 chr15 27797723 27797914 -57897840 + MER91A DNA MER1_type 1 194 -2 262 270 54 0 chr15 27798056 27798130 -57897624 + L1MC5 LINE L1 7830 7907 -54 2256 111 0 3 chr15 27798130 27798437 -57897317 - AluSq SINE Alu -7 306 1 2500 61 0 0 chr15 27798897 27799194 -57896560 - AluY SINE Alu -14 297 1 2241 116 3 0 chr15 27799362 27799665 -57896089 - AluSp SINE Alu -9 304 1 899 315 40 71 chr15 27799735 27800019 -57895735 + L2 LINE L2 2248 2539 -775 2235 94 0 3 chr15 27800019 27800305 -57895449 + AluSg SINE Alu 2 286 -24 899 315 40 71 chr15 27800305 27800652 -57895102 + L2 LINE L2 2539 2859 -455 927 258 5 14 chr15 27800812 27801033 -57894721 - MIR SINE MIR -43 219 1 2312 75 3 3 chr15 27801818 27802111 -57893643 - AluSc SINE Alu -16 293 1 192 347 151 22 chr15 27802689 27802914 -57892840 - L2 LINE L2 -337 2977 2724 1923 96 74 0 chr15 27803327 27803597 -57892157 + AluSc SINE Alu 1 290 -19 2098 129 0 0 chr15 27803710 27804004 -57891750 + AluJb SINE Alu 1 294 -18 2547 65 0 7 chr15 27804004 27804312 -57891442 + AluY SINE Alu 1 306 -5 258 32 0 0 chr15 27804801 27804832 -57890922 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 320 163 0 0 chr15 27804839 27804888 -57890866 - FLAM_A SINE Alu -25 108 60 181 200 71 129 chr15 27806183 27806230 -57889524 + MER5A DNA MER1_type 27 68 -121 2089 140 0 0 chr15 27806230 27806523 -57889231 + AluSx SINE Alu 1 293 -19 181 200 71 129 chr15 27806523 27806560 -57889194 + MER5A DNA MER1_type 68 106 -83 2303 71 54 0 chr15 27806738 27807032 -57888722 + AluSp SINE Alu 1 310 -3 1488 214 0 22 chr15 27807502 27807815 -57887939 - AluJo SINE Alu -6 306 1 2429 103 17 29 chr15 27808073 27808423 -57887331 - L1PB2 LINE L1 -2 6149 5804 2257 118 0 3 chr15 27808446 27808759 -57886995 + AluSx SINE Alu 1 312 0 2191 119 0 10 chr15 27809202 27809512 -57886242 + AluSx SINE Alu 1 307 -5 1693 156 20 43 chr15 27809522 27809824 -57885930 + AluJo SINE Alu 9 303 -9 2089 111 4 0 chr15 27809838 27810151 -57885603 + AluSx SINE Alu 3 316 0 354 327 0 9 chr15 27810366 27810476 -57885278 + MER93a LTR ERV1 1 109 -293 180 0 0 0 chr15 27810722 27810742 -57885012 + (A)n Simple_repeat Simple_repeat 1 20 0 793 196 20 14 chr15 27810761 27810909 -57884845 + FRAM SINE Alu 10 158 -18 1352 151 50 0 chr15 27810941 27811160 -57884594 + AluSx SINE Alu 1 230 -82 234 91 0 0 chr15 27811545 27811578 -57884176 + (A)n Simple_repeat Simple_repeat 1 33 0 321 26 0 0 chr15 27811944 27811982 -57883772 + (CA)n Simple_repeat Simple_repeat 2 39 0 614 252 30 88 chr15 27812019 27812200 -57883554 + MER93a LTR ERV1 136 299 -103 1793 175 10 23 chr15 27812200 27812509 -57883245 - AluJb SINE Alu -7 305 1 614 252 30 88 chr15 27812509 27812589 -57883165 + MER93a LTR ERV1 299 382 -20 205 162 95 95 chr15 27813862 27813936 -57881818 - MIR SINE MIR -75 187 114 225 0 0 0 chr15 27814123 27814148 -57881606 + (CA)n Simple_repeat Simple_repeat 2 26 0 1849 163 3 17 chr15 27814157 27814487 -57881267 + AluJb SINE Alu 1 312 0 573 189 133 66 chr15 27814507 27814703 -57881051 + L2 LINE L2 3104 3312 -1 640 213 37 0 chr15 27814937 27815073 -57880681 + MER3 DNA MER1_type 1 141 -68 24 32 0 0 chr15 27815435 27815466 -57880288 + AT_rich Low_complexity Low_complexity 1 31 0 1704 163 0 20 chr15 27815833 27816128 -57879626 - AluJo SINE Alu -23 289 1 189 0 0 0 chr15 27816516 27816537 -57879217 + (TA)n Simple_repeat Simple_repeat 1 21 0 2504 61 0 0 chr15 27816890 27817186 -57878568 - AluY SINE Alu -15 296 1 190 107 0 0 chr15 27817301 27817329 -57878425 + MIR SINE MIR 30 57 -151 2224 99 3 0 chr15 27817471 27817763 -57877991 - AluSx SINE Alu -19 293 1 794 136 30 15 chr15 27817772 27817904 -57877850 - AluJo SINE Alu -177 135 2 779 57 105 0 chr15 27817963 27818068 -57877686 - L1PB2 LINE L1 -2 6149 6034 2137 92 0 7 chr15 27818312 27818593 -57877161 - AluSg SINE Alu -31 279 1 200 267 100 0 chr15 27819813 27819873 -57875881 + MIR SINE MIR 48 113 -95 2308 93 7 0 chr15 27820525 27820825 -57874929 + AluSq SINE Alu 1 302 -11 929 268 137 33 chr15 27821049 27821534 -57874220 - MLT1H1 LTR MaLR 0 555 14 2019 113 58 0 chr15 27821628 27821920 -57873834 - AluSc SINE Alu 0 309 1 217 289 6 121 chr15 27821974 27822140 -57873614 - MIR SINE MIR -46 216 70 2203 107 13 0 chr15 27822243 27822543 -57873211 - AluSx SINE Alu -8 304 1 1083 145 0 24 chr15 27822544 27822710 -57873044 - AluJb SINE Alu -18 294 133 2017 126 7 3 chr15 27822800 27823101 -57872653 - AluSx SINE Alu -10 302 1 3445 173 67 72 chr15 27823123 27823859 -57871895 - MER44D DNA MER2_type 0 605 2 254 200 17 33 chr15 27824175 27824235 -57871519 + MER5B DNA MER1_type 4 62 -116 832 167 0 35 chr15 27824238 27824382 -57871372 + FLAM_C SINE Alu 2 140 -3 504 239 0 44 chr15 27824395 27824508 -57871246 - MER5B DNA MER1_type -67 111 4 856 146 0 0 chr15 27824915 27825045 -57870709 + AluSg/x SINE Alu 167 296 -16 1005 162 35 61 chr15 27825107 27825304 -57870450 - AluJb SINE Alu -31 281 90 1166 177 22 53 chr15 27825531 27825757 -57869997 + MER20 DNA MER1_type 1 219 0 255 79 0 0 chr15 27825837 27825875 -57869879 + (TG)n Simple_repeat Simple_repeat 2 39 0 2206 107 3 0 chr15 27826351 27826641 -57869113 - AluSq SINE Alu -22 291 1 365 203 0 0 chr15 27826895 27826954 -57868800 - AluJo SINE Alu -129 173 115 582 163 0 0 chr15 27827049 27827135 -57868619 - AluJb SINE Alu -224 88 3 384 237 0 0 chr15 27827224 27827300 -57868454 - MER5C DNA MER1_type -248 76 1 561 219 130 47 chr15 27827311 27827503 -57868251 + MER112 DNA MER1_type 5 212 -48 234 273 18 0 chr15 27827507 27827562 -57868192 + L2 LINE L2 3198 3253 -19 2160 87 31 3 chr15 27827645 27827933 -57867821 + AluSx SINE Alu 1 296 -16 395 345 58 54 chr15 27829006 27829229 -57866525 - L2 LINE L2 -26 3246 3023 2503 70 0 0 chr15 27829536 27829837 -57865917 - AluY SINE Alu -10 301 1 306 0 0 0 chr15 27830037 27830071 -57865683 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1868 115 77 0 chr15 27830074 27830335 -57865419 - AluSx SINE Alu -31 281 1 204 40 0 0 chr15 27830539 27830564 -57865190 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1984 137 0 14 chr15 27830567 27830852 -57864902 - AluSx SINE Alu -31 281 1 1600 161 84 13 chr15 27831170 27831469 -57864285 - MER2 DNA MER2_type -24 321 2 183 383 41 20 chr15 27831784 27831980 -57863774 + L2 LINE L2 2443 2642 -672 1196 108 12 0 chr15 27832431 27832597 -57863157 - AluSq SINE Alu -12 301 134 1541 122 14 0 chr15 27832597 27832818 -57862936 - AluSg/x SINE Alu -4 306 83 21 0 0 0 chr15 27833942 27833963 -57861791 + AT_rich Low_complexity Low_complexity 1 21 0 1856 164 3 7 chr15 27834145 27834443 -57861311 + AluSx SINE Alu 1 297 -15 2238 92 0 3 chr15 27835446 27835769 -57859985 + AluSq SINE Alu 1 322 0 1645 133 31 8 chr15 27835779 27836035 -57859719 + AluSx SINE Alu 35 296 -16 3749 125 2 33 chr15 27836362 27836660 -57859094 - MER1A DNA MER1_type -2173 527 252 2171 112 7 0 chr15 27836660 27836955 -57858799 + AluSq SINE Alu 1 297 -16 3749 125 2 33 chr15 27836955 27837200 -57858554 - MER1A DNA MER1_type -2448 252 1 2289 102 10 0 chr15 27837909 27838213 -57857541 - AluSp SINE Alu -6 307 1 2014 106 19 53 chr15 27838401 27838723 -57857031 + AluSx SINE Alu 2 312 0 1982 110 7 39 chr15 27838977 27839286 -57856468 - AluSg SINE Alu -11 299 1 2267 112 0 0 chr15 27839417 27839721 -57856033 - AluSg SINE Alu -6 304 1 2229 124 0 7 chr15 27840037 27840344 -57855410 - AluSx SINE Alu -7 305 1 1773 175 0 7 chr15 27840698 27840995 -57854759 - AluJb SINE Alu -15 297 3 2494 85 0 0 chr15 27841203 27841509 -57854245 + AluSx SINE Alu 1 306 -6 2294 93 0 23 chr15 27841511 27841813 -57853941 + AluSg SINE Alu 3 297 -13 854 203 0 0 chr15 27842716 27842869 -57852885 - AluJb SINE Alu -23 289 137 1992 148 0 0 chr15 27843182 27843480 -57852274 - AluSx SINE Alu -14 298 1 1222 314 0 119 chr15 27843492 27843836 -57851918 - AluSq SINE Alu 0 303 1 2025 114 7 10 chr15 27844315 27844614 -57851140 - AluSx SINE Alu -14 298 1 26 74 0 0 chr15 27845421 27845475 -57850279 + AT_rich Low_complexity Low_complexity 1 54 0 2264 81 0 17 chr15 27845516 27845811 -57849943 - AluY SINE Alu -21 290 1 2076 79 10 14 chr15 27845999 27846290 -57849464 - AluY SINE Alu -17 294 5 2210 116 3 3 chr15 27846559 27846870 -57848884 - AluSp SINE Alu -2 311 1 1968 135 0 10 chr15 27847225 27847522 -57848232 + AluSx SINE Alu 1 294 -18 905 216 114 13 chr15 27848714 27848950 -57846804 + MIR SINE MIR 3 262 0 908 181 165 42 chr15 27849118 27849427 -57846327 - L1MDa LINE L1 -3427 3113 2767 2099 121 10 7 chr15 27849427 27849733 -57846021 - AluSx SINE Alu -5 307 1 394 197 34 51 chr15 27849738 27849855 -57845899 - L1MDa LINE L1 -4620 1920 1806 206 62 31 0 chr15 27849950 27849982 -57845772 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2150 123 3 13 chr15 27850015 27850324 -57845430 - AluSx SINE Alu -6 306 1 1244 161 29 0 chr15 27850356 27850561 -57845193 - AluJo SINE Alu -18 294 84 312 126 207 11 chr15 27850561 27850648 -57845106 - L1MDa LINE L1 -5108 1422 1319 732 200 0 0 chr15 27850648 27850768 -57844986 - AluJb SINE Alu -15 297 178 1768 158 10 7 chr15 27851030 27851327 -57844427 + AluSx SINE Alu 1 298 -14 2215 126 7 0 chr15 27851590 27851900 -57843854 - AluSx SINE Alu 0 312 1 2242 115 0 7 chr15 27851901 27852205 -57843549 - AluSx SINE Alu -8 304 3 2189 126 7 0 chr15 27852566 27852876 -57842878 - AluSx SINE Alu 0 312 1 2067 116 0 13 chr15 27852889 27853190 -57842564 - AluSg SINE Alu -13 297 1 705 266 86 26 chr15 27853341 27853802 -57841952 + L1ME LINE L1 2 559 -5511 2151 127 0 3 chr15 27854798 27855098 -57840656 + AluSx SINE Alu 1 299 -13 210 315 14 0 chr15 27855281 27855354 -57840400 + MIR3 SINE MIR 105 178 -30 2506 80 0 0 chr15 27855493 27855794 -57839960 - AluSq SINE Alu -12 301 1 2193 132 0 7 chr15 27855795 27856105 -57839649 - AluSx SINE Alu -4 308 1 1825 147 23 42 chr15 27856371 27856494 -57839260 + AluJb SINE Alu 1 125 -187 2192 116 3 0 chr15 27856494 27856788 -57838966 - AluSp SINE Alu -18 295 1 1825 147 23 42 chr15 27856788 27856971 -57838783 + AluJb SINE Alu 125 301 -11 917 240 14 14 chr15 27857370 27857587 -57838167 + MIR SINE MIR 2 218 -44 1860 145 14 3 chr15 27857723 27858005 -57837749 + AluJb SINE Alu 1 285 -27 479 90 154 0 chr15 27858138 27858216 -57837538 + 5S rRNA rRNA 1 90 -31 492 189 82 113 chr15 27858803 27858962 -57836792 - MER58B DNA MER1_type -6 335 182 934 87 0 0 chr15 27859333 27859460 -57836294 + AluY SINE Alu 174 300 -11 790 217 145 4 chr15 27860131 27860366 -57835388 - MER113 DNA MER1_type? -4 517 250 1840 179 3 3 chr15 27860406 27860707 -57835047 - AluJb SINE Alu -11 301 1 2167 126 0 3 chr15 27860731 27861086 -57834668 - AluSx SINE Alu 0 354 1 2115 124 0 23 chr15 27861086 27861393 -57834361 - AluSx SINE Alu -12 300 1 1831 65 4 4 chr15 27861399 27861631 -57834123 - L1PA14 LINE L1 -2 6159 5928 1461 237 46 20 chr15 27861633 27862026 -57833728 - L1ME3A LINE L1 0 6170 5768 377 271 63 5 chr15 27862029 27862236 -57833518 - MER113 DNA MER1_type? -302 219 1 2247 100 3 3 chr15 27862682 27862983 -57832771 - AluSx SINE Alu -11 301 1 693 246 143 21 chr15 27862984 27863453 -57832301 - L2 LINE L2 -8 3305 2775 2377 78 17 0 chr15 27863453 27863748 -57832006 - AluSx SINE Alu -12 300 1 861 219 142 5 chr15 27863839 27864058 -57831696 + MIR SINE MIR 8 256 -6 2307 97 0 0 chr15 27864753 27865051 -57830703 - AluSx SINE Alu -14 298 1 2350 73 0 7 chr15 27865164 27865466 -57830288 + AluY SINE Alu 1 300 -11 2084 124 3 0 chr15 27865479 27865762 -57829992 + AluSp SINE Alu 1 284 -29 1604 171 8 0 chr15 27866220 27866483 -57829271 + MER2 DNA MER2_type 1 265 -80 1805 143 13 29 chr15 27866509 27866824 -57828930 - AluJo SINE Alu -1 311 2 183 42 0 0 chr15 27866851 27866875 -57828879 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1119 134 0 6 chr15 27866875 27867034 -57828720 - AluSg/x SINE Alu -26 284 127 1290 184 86 8 chr15 27867043 27867189 -57828565 - AluJb SINE Alu -24 288 155 180 0 0 0 chr15 27867189 27867209 -57828545 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1290 184 86 8 chr15 27867209 27867329 -57828425 - AluJb SINE Alu -157 155 1 266 207 62 0 chr15 27867337 27867409 -57828345 + L1ME LINE L1 5471 5546 -787 283 205 0 77 chr15 27867506 27867584 -57828170 + MER116 DNA Mariner 9 80 0 291 335 48 5 chr15 27867585 27867791 -57827963 + L1MC/D LINE L1 4840 5054 -1092 2094 116 3 0 chr15 27867853 27868145 -57827609 + AluSq SINE Alu 1 293 -20 382 269 154 29 chr15 27868162 27868592 -57827162 + L1MC/D LINE L1 5189 5689 -500 261 207 0 0 chr15 27868573 27868631 -57827123 - L1MC4 LINE L1 -1339 6703 6646 * 1847 144 10 7 chr15 27868636 27868928 -57826826 - AluSq SINE Alu -20 293 1 248 289 16 58 chr15 27869461 27869582 -57826172 + AluJo/FLAM SINE Alu 17 132 -170 2365 73 0 3 chr15 27869582 27869869 -57825885 - AluSc SINE Alu -23 286 1 23 0 0 0 chr15 27869869 27869892 -57825862 + AT_rich Low_complexity Low_complexity 1 23 0 370 269 108 54 chr15 27869908 27870075 -57825679 + L1ME LINE L1 5577 5752 -369 1662 162 14 7 chr15 27870116 27870394 -57825360 + AluJb SINE Alu 1 280 -32 2115 124 7 3 chr15 27871524 27871822 -57823932 + AluSx SINE Alu 1 299 -13 2132 120 10 0 chr15 27872739 27873039 -57822715 + AluSx SINE Alu 1 303 -9 209 336 142 26 chr15 27873159 27873509 -57822245 - L2 LINE L2 -182 3090 2698 2171 121 3 7 chr15 27873719 27874026 -57821728 - AluJb SINE Alu -5 307 2 313 374 10 87 chr15 27874338 27874533 -57821221 - L2 LINE L2 -85 3187 3008 363 285 217 35 chr15 27874647 27875016 -57820738 - L2 LINE L2 -481 2833 2398 316 335 0 19 chr15 27875699 27875908 -57819846 + GA-rich Low_complexity Low_complexity 1 205 0 2209 111 0 0 chr15 27877242 27877540 -57818214 + AluY SINE Alu 1 298 -13 3360 134 47 2 chr15 27878348 27878877 -57816877 + L1MB2 LINE L1 5612 6164 -7 2137 68 60 18 chr15 27878911 27879192 -57816562 + AluY SINE Alu 2 294 -17 562 175 113 127 chr15 27879223 27879468 -57816286 - L1MB7 LINE L1 -20 6164 5922 1918 167 62 0 chr15 27879468 27879791 -57815963 + MER2 DNA MER2_type 1 343 -1 276 185 0 37 chr15 27879867 27879921 -57815833 + FLAM SINE Alu 73 124 -9 1783 156 0 20 chr15 27879934 27880236 -57815518 + AluJb SINE Alu 5 300 -12 1045 95 89 68 chr15 27880450 27880580 -57815174 + L1PB1 LINE L1 5958 6095 -56 2057 122 31 0 chr15 27880580 27880868 -57814886 + AluSx SINE Alu 1 297 -15 1045 95 89 68 chr15 27880868 27880927 -57814827 + L1PB1 LINE L1 6095 6151 0 189 0 0 0 chr15 27881092 27881113 -57814641 + (GA)n Simple_repeat Simple_repeat 2 22 0 242 273 18 0 chr15 27881533 27881588 -57814166 - L2 LINE L2 -19 3253 3198 621 239 8 0 chr15 27881629 27881746 -57814008 + FLAM_A SINE Alu 2 119 -14 1160 190 87 30 chr15 27881762 27882062 -57813692 - L1M4 LINE L1 -912 5234 4918 975 158 25 116 chr15 27882141 27882282 -57813472 - AluJo SINE Alu -53 259 155 2236 103 3 28 chr15 27882282 27882602 -57813152 - AluSx SINE Alu 0 312 1 975 158 25 116 chr15 27882602 27882745 -57813009 - AluJo SINE Alu -157 155 1 180 97 0 0 chr15 27883404 27883435 -57812319 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 460 185 160 42 chr15 27885407 27885512 -57810242 + MER3 DNA MER1_type 1 123 -39 2085 115 28 0 chr15 27885512 27885798 -57809956 - AluSx SINE Alu -18 294 1 460 185 160 42 chr15 27885798 27885811 -57809943 + MER3 DNA MER1_type 123 133 -76 186 43 0 0 chr15 27885920 27885943 -57809811 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 856 182 182 84 chr15 27886613 27886921 -57808833 - MSTD LTR MaLR 0 396 28 1722 166 32 14 chr15 27887110 27887393 -57808361 + AluJb SINE Alu 1 288 -24 1834 144 3 39 chr15 27888372 27888677 -57807077 + AluSx SINE Alu 1 294 -18 269 250 23 0 chr15 27888875 27888963 -57806791 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr15 27888963 27888998 -57806756 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 809 162 0 74 chr15 27889092 27889240 -57806514 - FLAM_C SINE Alu -5 138 2 777 93 0 34 chr15 27889839 27889957 -57805797 + AluY SINE Alu 2 115 -196 23 152 0 0 chr15 27889987 27890020 -57805734 + GC_rich Low_complexity Low_complexity 1 33 0 1760 160 0 47 chr15 27892775 27893075 -57802679 + AluJb SINE Alu 1 286 -26 1560 224 43 0 chr15 27893349 27893675 -57802079 + MER58B DNA MER1_type 2 341 0 1927 85 8 15 chr15 27893710 27893969 -57801785 - AluY SINE Alu -19 292 36 2205 115 0 3 chr15 27893971 27894267 -57801487 - AluSx SINE Alu -17 295 1 670 250 0 0 chr15 27894269 27894393 -57801361 - FLAM_A SINE Alu -8 125 2 256 217 17 17 chr15 27894449 27894509 -57801245 + MIR SINE MIR 84 143 -119 1960 112 12 0 chr15 27894664 27894922 -57800832 + AluSx SINE Alu 2 262 -50 1552 293 110 24 chr15 27894945 27895538 -57800216 + L1MEd LINE L1 177 820 -5299 1144 157 5 81 chr15 27895976 27896094 -57799660 - MER2 DNA MER2_type -139 206 111 1759 177 10 3 chr15 27896094 27896393 -57799361 + AluJb SINE Alu 1 301 -11 1144 157 5 81 chr15 27896393 27896497 -57799257 - MER2 DNA MER2_type -234 111 1 553 275 140 24 chr15 27896500 27896549 -57799205 + L1MEd LINE L1 996 1038 -1452 2235 111 0 13 chr15 27896549 27896856 -57798898 + AluSg SINE Alu 1 303 -7 553 275 140 24 chr15 27896856 27897327 -57798427 + L1MEd LINE L1 1038 1627 -863 1901 143 10 14 chr15 27897528 27897821 -57797933 + AluJo SINE Alu 1 292 -20 1736 119 61 73 chr15 27898055 27898398 -57797356 + MER1B DNA MER1_type 1 339 0 856 66 0 0 chr15 27898677 27898783 -57796971 + AluY SINE Alu 206 311 0 2135 136 0 0 chr15 27898796 27899104 -57796650 + AluSx SINE Alu 1 308 -4 555 128 81 0 chr15 27899147 27899233 -57796521 - MER46A DNA MER2_type -143 93 1 314 295 171 12 chr15 27899246 27899497 -57796257 + L1ME3 LINE L1 2546 2836 -3546 2326 92 0 3 chr15 27899584 27899890 -57795864 + AluSg SINE Alu 1 305 -5 322 183 166 35 chr15 27899913 27900082 -57795672 + L1ME3 LINE L1 3025 3215 -3167 347 293 68 54 chr15 27900280 27900511 -57795243 + L1ME3 LINE L1 3231 3457 -2925 1714 151 7 47 chr15 27900511 27900648 -57795106 + AluJb SINE Alu 1 142 -170 2636 45 3 0 chr15 27900648 27900956 -57794798 + AluY SINE Alu 1 309 -2 1714 151 7 47 chr15 27900956 27901117 -57794637 + AluJb SINE Alu 142 287 -25 347 293 68 54 chr15 27901117 27901165 -57794589 + L1ME3 LINE L1 3457 3503 -2879 2257 64 14 4 chr15 27901165 27901474 -57794280 + AluY SINE Alu 1 312 0 347 293 68 54 chr15 27901474 27901676 -57794078 + L1ME3 LINE L1 3503 3721 -2661 35 41 0 0 chr15 27901818 27901867 -57793887 + AT_rich Low_complexity Low_complexity 1 49 0 309 260 146 7 chr15 27901973 27902178 -57793576 + L1ME3 LINE L1 5152 5397 -985 2550 46 0 7 chr15 27902566 27902873 -57792881 - AluY SINE Alu -6 305 1 3679 147 29 78 chr15 27902953 27903510 -57792244 + L1MB7 LINE L1 5378 5961 -223 1691 166 13 10 chr15 27903510 27903811 -57791943 + AluJb SINE Alu 1 302 -10 3679 147 29 78 chr15 27903811 27903860 -57791894 + L1MB7 LINE L1 5961 6011 -173 1847 127 76 0 chr15 27903860 27904135 -57791619 + AluSx SINE Alu 1 296 -16 3679 147 29 78 chr15 27904135 27904301 -57791453 + L1MB7 LINE L1 6011 6111 -73 2150 114 6 19 chr15 27904301 27904617 -57791137 + AluSx SINE Alu 1 312 0 3679 147 29 78 chr15 27904617 27904666 -57791088 + L1MB7 LINE L1 6111 6161 -23 252 173 101 59 chr15 27904712 27904859 -57790895 + L1ME3 LINE L1 5438 5596 -797 503 274 139 20 chr15 27904955 27905200 -57790554 + L1ME3 LINE L1 5831 6104 -294 649 147 138 0 chr15 27905214 27905330 -57790424 + FLAM_C SINE Alu 2 133 0 2842 228 68 22 chr15 27905378 27906201 -57789553 + L1ME3A LINE L1 5262 6160 -10 1373 198 10 32 chr15 27906211 27906331 -57789423 + AluJb SINE Alu 1 122 -190 2210 89 10 7 chr15 27906331 27906623 -57789131 - AluSc SINE Alu -16 293 1 1373 198 10 32 chr15 27906623 27906810 -57788944 + AluJb SINE Alu 122 301 -11 454 228 68 117 chr15 27906829 27907032 -57788722 + L1M4 LINE L1 3440 3626 -2520 2277 82 0 0 chr15 27907032 27907335 -57788419 - AluSx SINE Alu 0 305 3 454 228 68 117 chr15 27907335 27907437 -57788317 + L1M4 LINE L1 3626 3731 -2415 246 62 0 0 chr15 27907437 27907469 -57788285 + (TA)n Simple_repeat Simple_repeat 2 33 0 277 239 64 45 chr15 27907586 27907758 -57787996 + L1MC/D LINE L1 5659 5835 -335 633 229 149 16 chr15 27907778 27908093 -57787661 + L1M4c LINE L1 2041 2397 -3987 189 0 0 0 chr15 27908094 27908115 -57787639 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2069 96 3 58 chr15 27908116 27908428 -57787326 + AluSg SINE Alu 2 296 -14 3106 216 41 35 chr15 27908431 27908545 -57787209 + L1M4c LINE L1 2449 2561 -3821 216 0 0 0 chr15 27908545 27908569 -57787185 + (TA)n Simple_repeat Simple_repeat 1 24 0 3106 216 41 35 chr15 27908569 27908984 -57786770 + L1M4c LINE L1 2561 2972 -3410 2191 125 0 3 chr15 27908984 27909281 -57786473 + AluSq SINE Alu 1 296 -17 3106 216 41 35 chr15 27909281 27909510 -57786244 + L1M4c LINE L1 2972 3216 -3166 1558 183 74 0 chr15 27909510 27909795 -57785959 - AluJb SINE Alu -6 306 1 3106 216 41 35 chr15 27909795 27909858 -57785896 + L1M4c LINE L1 3216 3277 -3105 * 3692 124 23 69 chr15 27909846 27910005 -57785749 + L1MA4 LINE L1 4697 4862 -1441 2299 73 40 10 chr15 27910005 27910306 -57785448 - AluY SINE Alu -1 310 1 3692 124 23 69 chr15 27910306 27910800 -57784954 + L1MA4 LINE L1 4862 5377 -926 2006 145 0 0 chr15 27910800 27911089 -57784665 + AluSx SINE Alu 1 289 -23 3692 124 23 69 chr15 27911089 27911228 -57784526 + L1MA4 LINE L1 5377 5430 -873 2368 58 0 10 chr15 27911228 27911523 -57784231 + AluY SINE Alu 1 292 -19 3692 124 23 69 chr15 27911523 27911704 -57784050 + L1MA4 LINE L1 5430 5618 -685 681 103 37 9 chr15 27911805 27911912 -57783842 + L1MA4 LINE L1 5623 5732 -571 1397 181 0 30 chr15 27911929 27912199 -57783555 + AluJo SINE Alu 15 276 -36 2012 136 7 3 chr15 27912199 27912493 -57783261 - AluJb SINE Alu -17 295 1 2641 127 58 62 chr15 27912527 27912933 -57782821 + L1MA4 LINE L1 5796 6201 -99 2089 133 3 0 chr15 27912933 27913235 -57782519 - AluSq SINE Alu -10 303 1 2641 127 58 62 chr15 27913235 27913332 -57782422 + L1MA4 LINE L1 6201 6297 -3 1688 166 93 2 chr15 27913338 27913574 -57782180 + L1M4c LINE L1 3264 3477 -2905 2060 148 0 3 chr15 27913574 27913877 -57781877 + AluSx SINE Alu 1 302 -10 1688 166 93 2 chr15 27913877 27914038 -57781716 + L1M4c LINE L1 3477 3697 -2685 816 173 8 0 chr15 27914038 27914165 -57781589 + FLAM_C SINE Alu 2 129 -14 1103 153 59 5 chr15 27915510 27915712 -57780042 + AluJo SINE Alu 83 295 -17 408 196 170 0 chr15 27915971 27916083 -57779671 + MIR SINE MIR 90 220 -42 1925 143 4 0 chr15 27916193 27916472 -57779282 - AluSx SINE Alu -24 288 9 1362 185 10 53 chr15 27916539 27916842 -57778912 - AluJo SINE Alu -22 290 1 2191 85 0 4 chr15 27917006 27917287 -57778467 + AluSx SINE Alu 28 307 -5 1685 141 81 25 chr15 27917799 27918082 -57777672 + AluJo SINE Alu 1 299 -13 1990 109 18 3 chr15 27918091 27918375 -57777379 + AluSq SINE Alu 9 296 -17 2150 103 14 3 chr15 27918382 27918674 -57777080 + AluSg SINE Alu 1 295 -15 1311 175 78 45 chr15 27918709 27919017 -57776737 + MLT1A2 LTR MaLR 57 374 0 2139 124 3 0 chr15 27919285 27919584 -57776170 + AluSx SINE Alu 2 301 -11 2066 135 0 13 chr15 27919589 27919893 -57775861 + AluSx SINE Alu 1 300 -12 2042 135 14 3 chr15 27920107 27920403 -57775351 + AluSx SINE Alu 3 301 -11 1690 156 21 17 chr15 27920489 27920777 -57774977 + AluSx SINE Alu 1 289 -23 414 198 130 51 chr15 27920805 27920982 -57774772 + L1MC5 LINE L1 7722 7912 -49 226 191 257 38 chr15 27921165 27921270 -57774484 - MIR SINE MIR -49 213 86 2099 136 0 0 chr15 27921284 27921579 -57774175 + AluSx SINE Alu 1 295 -17 2092 103 10 7 chr15 27922637 27922928 -57772826 + AluSg SINE Alu 1 292 -18 2213 98 0 14 chr15 27923019 27923316 -57772438 + AluSc SINE Alu 1 293 -16 318 207 15 111 chr15 27923386 27923521 -57772233 + L1MC4a LINE L1 5813 5934 -1874 552 319 87 9 chr15 27924178 27924407 -57771347 + MIR SINE MIR 4 250 -12 2329 80 13 3 chr15 27924519 27924819 -57770935 + AluY SINE Alu 1 303 -8 2290 114 0 0 chr15 27925180 27925478 -57770276 - AluSx SINE Alu -14 298 1 2258 108 3 10 chr15 27925552 27925866 -57769888 - AluSq SINE Alu -1 312 1 591 180 0 0 chr15 27925988 27926077 -57769677 - AluJ/FLAM SINE Alu -222 90 2 2133 119 3 7 chr15 27926080 27926409 -57769345 - AluSx SINE Alu 0 312 1 885 170 0 0 chr15 27926414 27926555 -57769199 - FLAM_A SINE Alu 0 142 2 272 270 78 26 chr15 27927233 27927348 -57768406 - L2 LINE L2 -864 2450 2330 196 301 86 31 chr15 27927350 27927513 -57768241 - L2 LINE L2 -1422 1892 1721 304 246 59 25 chr15 27928014 27928132 -57767622 + L1M4 LINE L1 5022 5143 -1003 1632 166 42 7 chr15 27928150 27928439 -57767315 + AluJo SINE Alu 1 299 -13 1895 127 0 0 chr15 27928493 27928746 -57767008 + AluSq SINE Alu 1 253 -60 6867 148 212 10 chr15 27928864 27929177 -57766577 + L1MA7 LINE L1 3435 3684 -2607 1960 122 56 11 chr15 27929177 27929464 -57766290 - AluSx SINE Alu -12 300 1 6867 148 212 10 chr15 27929464 27929692 -57766062 + L1MA7 LINE L1 3684 3865 -2426 1884 145 30 10 chr15 27929692 27929989 -57765765 - AluJo SINE Alu -9 303 1 6867 148 212 10 chr15 27929989 27931227 -57764527 + L1MA7 LINE L1 3865 5588 -703 1062 186 0 0 chr15 27931236 27931419 -57764335 + FRAM SINE Alu 1 175 -1 3189 134 93 5 chr15 27931421 27931980 -57763774 + L1MA7 LINE L1 5611 6218 -73 471 185 0 0 chr15 27931981 27932073 -57763681 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 1058 135 6 0 chr15 27932073 27932251 -57763503 + (TA)n Simple_repeat Simple_repeat 1 179 0 350 139 0 14 chr15 27932251 27932323 -57763431 + L1MA7 LINE L1 6219 6289 -2 851 111 0 0 chr15 27932717 27932834 -57762920 + AluSg/x SINE Alu 185 301 -11 1617 219 61 39 chr15 27932839 27933382 -57762372 - L1M4 LINE L1 -3418 2728 2174 1899 111 63 0 chr15 27933386 27933656 -57762098 + AluSx SINE Alu 7 293 -19 24 32 0 0 chr15 27933840 27933871 -57761883 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr15 27933947 27933977 -57761777 + AT_rich Low_complexity Low_complexity 1 30 0 437 197 13 0 chr15 27934033 27934109 -57761645 + L1PA8A LINE L1 6048 6124 -7 488 282 181 87 chr15 27934175 27934342 -57761412 + L2 LINE L2 2137 2287 -1027 242 88 59 0 chr15 27934342 27934442 -57761312 - Alu SINE Alu 0 350 249 1140 124 159 15 chr15 27934442 27934495 -57761259 + MER30 DNA MER1_type 1 45 -185 1768 171 7 7 chr15 27934495 27934793 -57760961 + AluSx SINE Alu 1 298 -14 1140 124 159 15 chr15 27934793 27934940 -57760814 + MER30 DNA MER1_type 45 230 0 488 282 181 87 chr15 27934940 27935301 -57760453 + L2 LINE L2 2286 2753 -561 999 228 56 0 chr15 27935354 27935551 -57760203 - MER58A DNA MER1_type -4 220 13 244 349 9 28 chr15 27935563 27935669 -57760085 + L2 LINE L2 2821 2924 -389 1801 165 0 3 chr15 27936102 27936393 -57759361 - AluJb SINE Alu -22 290 1 187 268 295 0 chr15 27936491 27936603 -57759151 + L3 LINE CR1 1160 1304 -273 333 211 56 44 chr15 27936660 27936750 -57759004 + L3 LINE CR1 1305 1395 -182 1114 204 21 16 chr15 27936753 27937004 -57758750 + MIR SINE MIR 4 255 -7 256 216 162 27 chr15 27937012 27937123 -57758631 + L3 LINE CR1 1382 1507 -70 385 192 224 83 chr15 27937145 27937236 -57758518 - MER5A DNA MER1_type -3 186 109 2375 86 0 16 chr15 27937236 27937540 -57758214 - AluSc SINE Alu -10 299 1 385 192 224 83 chr15 27937540 27937604 -57758150 - MER5A DNA MER1_type -80 109 9 2179 112 16 7 chr15 27937665 27937970 -57757784 - AluSx SINE Alu -4 308 1 950 133 0 15 chr15 27938105 27938240 -57757514 - FLAM_C SINE Alu 0 133 1 837 205 0 48 chr15 27938314 27938480 -57757274 - FRAM SINE Alu -8 158 1 21 0 0 0 chr15 27938480 27938501 -57757253 + AT_rich Low_complexity Low_complexity 1 21 0 1351 149 112 45 chr15 27939261 27939530 -57756224 + AluJb SINE Alu 1 287 -25 1656 146 94 4 chr15 27940058 27940325 -57755429 + AluJb SINE Alu 1 291 -21 2294 101 3 7 chr15 27940334 27940641 -57755113 + AluSx SINE Alu 1 306 -6 191 191 48 0 chr15 27941058 27941100 -57754654 + MER5B DNA MER1_type 12 55 -123 265 203 95 0 chr15 27941115 27941189 -57754565 + L1MC4 LINE L1 6824 6904 -1138 * 1908 230 91 10 chr15 27941172 27941725 -57754029 + L1ME1 LINE L1 5566 6161 -5 409 169 14 0 chr15 27941737 27941808 -57753946 + L1MC4 LINE L1 6944 7015 -1027 * 10260 154 92 76 chr15 27941804 27943056 -57752698 + L1MCa LINE L1 17 1248 -5178 794 139 9 0 chr15 27943056 27943171 -57752583 + FLAM_C SINE Alu 1 116 -17 10260 154 92 76 chr15 27943171 27943750 -57752004 + L1MCa LINE L1 1248 1816 -4610 2101 111 3 10 chr15 27943750 27944047 -57751707 + AluSx SINE Alu 1 295 -17 10260 154 92 76 chr15 27944047 27944891 -57750863 + L1MCa LINE L1 1816 2645 -3781 1938 137 7 0 chr15 27944891 27945168 -57750586 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr15 27945168 27945198 -57750556 + (CA)n Simple_repeat Simple_repeat 1 30 0 10260 154 92 76 chr15 27945198 27945663 -57750091 + L1MCa LINE L1 2644 3206 -3220 1039 133 0 13 chr15 27945664 27945814 -57749940 + AluJo SINE Alu 1 148 -164 5156 211 32 44 chr15 27945828 27946391 -57749363 + L1M4 LINE L1 3805 4373 -1773 2222 118 0 0 chr15 27946391 27946680 -57749074 + AluSx SINE Alu 1 289 -23 5156 211 32 44 chr15 27946680 27947608 -57748146 + L1M4 LINE L1 4373 5279 -867 2273 99 0 3 chr15 27947609 27947903 -57747851 + AluSx SINE Alu 1 293 -19 243 228 43 54 chr15 27948100 27948192 -57747562 - L1MEd LINE L1 -4868 1251 1161 566 239 143 75 chr15 27948215 27948367 -57747387 - L1MEd LINE L1 -5020 1099 959 1985 126 14 0 chr15 27948367 27948652 -57747102 - AluSx SINE Alu -23 289 1 566 239 143 75 chr15 27948652 27948955 -57746799 - L1MEd LINE L1 -5160 959 613 21 0 0 0 chr15 27949560 27949581 -57746173 + AT_rich Low_complexity Low_complexity 1 21 0 2199 111 10 0 chr15 27949969 27950267 -57745487 - AluSp SINE Alu -12 301 1 411 240 0 10 chr15 27950336 27950436 -57745318 - L1MC/D LINE L1 -2021 5787 5689 312 342 45 7 chr15 27950577 27950732 -57745022 + HAL1 LINE L1 1791 1951 -556 413 257 27 60 chr15 27950766 27950949 -57744805 + HAL1 LINE L1 2153 2329 -178 956 139 77 52 chr15 27950964 27951158 -57744596 - MER46A DNA MER2_type -10 226 28 1132 132 0 39 chr15 27951254 27951436 -57744318 - AluSg/x SINE Alu -4 308 134 2691 38 0 6 chr15 27951436 27951752 -57744002 - AluYb8 SINE Alu 0 318 5 734 235 268 9 chr15 27951760 27952088 -57743666 - L1M4 LINE L1 -1983 4163 3751 21 0 0 0 chr15 27953105 27953126 -57742628 + AT_rich Low_complexity Low_complexity 1 21 0 2271 105 3 0 chr15 27953132 27953438 -57742316 + AluSc SINE Alu 3 309 0 1902 119 16 16 chr15 27955434 27955744 -57740010 + AluSx SINE Alu 3 312 0 2161 119 23 0 chr15 27956241 27956544 -57739210 - AluSg SINE Alu 0 310 1 304 225 0 42 chr15 27957046 27957117 -57738637 + AluSg/x SINE Alu 118 185 -115 232 87 0 43 chr15 27957550 27957596 -57738158 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2199 92 3 23 chr15 27957602 27957906 -57737848 - AluSg SINE Alu -12 298 1 183 278 111 0 chr15 27957943 27957997 -57737757 - MIR3 SINE MIR -54 154 95 2343 95 7 0 chr15 27958191 27958486 -57737268 - AluSx SINE Alu -14 298 2 820 267 51 5 chr15 27958813 27959008 -57736746 - MIR SINE MIR -49 213 10 2146 127 3 0 chr15 27959272 27959572 -57736182 + AluSx SINE Alu 1 301 -11 317 0 70 0 chr15 27960306 27960349 -57735405 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2222 82 3 40 chr15 27960402 27960706 -57735048 - AluSx SINE Alu -19 293 1 2404 83 0 10 chr15 27963308 27963620 -57732134 - AluY SINE Alu -2 309 1 2058 111 3 49 chr15 27963625 27963792 -57731962 - AluSx SINE Alu -19 293 145 2362 84 3 0 chr15 27963792 27964088 -57731666 - AluSx SINE Alu -15 297 1 2058 111 3 49 chr15 27964088 27964227 -57731527 - AluSx SINE Alu -167 145 1 1287 191 0 4 chr15 27964395 27964620 -57731134 + AluJb SINE Alu 85 308 -4 635 182 78 52 chr15 27964828 27964982 -57730772 + FRAM SINE Alu 1 158 -8 275 260 154 16 chr15 27965490 27965613 -57730141 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 27966089 27966131 -57729623 + AT_rich Low_complexity Low_complexity 1 42 0 2290 100 0 3 chr15 27966238 27966539 -57729215 + AluSg SINE Alu 1 300 -10 2244 113 0 19 chr15 27966619 27966937 -57728817 + AluSx SINE Alu 1 312 0 711 186 0 8 chr15 27966945 27967069 -57728685 + FLAM_C SINE Alu 1 123 -20 1028 169 46 18 chr15 27967086 27967305 -57728449 + L1PB4 LINE L1 5932 6156 0 592 246 56 15 chr15 27967329 27967524 -57728230 + L1ME1 LINE L1 5959 6161 -5 1129 148 0 12 chr15 27967768 27967937 -57727817 - AluSg/x SINE Alu -18 292 126 593 199 15 0 chr15 27968345 27968476 -57727278 - L1MC4a LINE L1 -1813 5995 5863 * 5199 139 50 48 chr15 27968473 27969803 -57725951 + L1MA3 LINE L1 4976 6305 0 2134 110 10 7 chr15 27969877 27970178 -57725576 - AluSp SINE Alu -10 303 2 637 231 47 6 chr15 27970179 27970348 -57725406 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 27970352 27970375 -57725379 + (TC)n Simple_repeat Simple_repeat 1 23 0 305 241 72 0 chr15 27970375 27970458 -57725296 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 27970474 27970541 -57725213 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 27970543 27970834 -57724920 - AluSp SINE Alu -23 290 17 1021 137 47 21 chr15 27971339 27971529 -57724225 + MER3 DNA MER1_type 8 202 -7 1869 135 20 33 chr15 27971881 27972185 -57723569 - AluSx SINE Alu -12 300 1 1365 132 0 0 chr15 27972434 27972623 -57723131 - AluSg/x SINE Alu -20 292 104 844 161 6 29 chr15 27972872 27973046 -57722708 + AluSg/x SINE Alu 128 297 -13 465 266 8 8 chr15 27973357 27973481 -57722273 - MER94 DNA DNA -7 127 4 1561 205 0 3 chr15 27973692 27973985 -57721769 - AluJo SINE Alu -2 310 19 23 0 0 0 chr15 27973992 27974015 -57721739 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr15 27974288 27974318 -57721436 + AT_rich Low_complexity Low_complexity 1 30 0 2179 120 3 0 chr15 27975213 27975514 -57720240 + AluSg SINE Alu 1 302 -8 31 0 0 0 chr15 27977012 27977043 -57718711 + AT_rich Low_complexity Low_complexity 1 31 0 243 259 65 43 chr15 27977060 27977124 -57718630 + L1ME4a LINE L1 5379 5440 -681 1543 175 34 10 chr15 27977124 27977415 -57718339 + AluJo SINE Alu 1 298 -14 243 259 65 43 chr15 27977415 27977489 -57718265 + L1ME4a LINE L1 5440 5520 -601 287 266 121 28 chr15 27977618 27977783 -57717971 + L1ME4a LINE L1 5736 5933 -188 1843 151 16 16 chr15 27977783 27978087 -57717667 + AluSx SINE Alu 1 304 -8 287 266 121 28 chr15 27978087 27978169 -57717585 + L1ME4a LINE L1 5933 6006 -115 2066 105 4 0 chr15 27978959 27979236 -57716518 - AluSg SINE Alu -16 294 17 1913 150 0 26 chr15 27979833 27980140 -57715614 + AluSx SINE Alu 1 299 -13 409 258 13 66 chr15 27980754 27980905 -57714849 + MLT1L LTR MaLR 136 278 -337 279 244 47 63 chr15 27981023 27981150 -57714604 + MLT1L LTR MaLR 483 607 -8 890 239 108 33 chr15 27981757 27982063 -57713691 + Charlie2 DNA MER1_type 1 329 -2453 * 934 213 42 82 chr15 27982055 27982361 -57713393 + Charlie2 DNA MER1_type 1856 2142 -720 2285 101 0 0 chr15 27982361 27982657 -57713097 + AluSx SINE Alu 3 298 -14 934 213 42 82 chr15 27982657 27982778 -57712976 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 27983497 27983518 -57712236 + AT_rich Low_complexity Low_complexity 1 21 0 2224 89 0 0 chr15 27983568 27983873 -57711881 + AluSg SINE Alu 3 307 0 620 63 0 0 chr15 27983969 27984048 -57711706 + MADE1 DNA Mariner 1 79 -1 4033 55 0 0 chr15 27984202 27984691 -57711063 + L1PA6 LINE L1 5607 6095 -59 282 392 48 16 chr15 27984813 27984938 -57710816 + L2 LINE L2 3123 3251 -21 21 0 0 0 chr15 27985409 27985430 -57710324 + AT_rich Low_complexity Low_complexity 1 21 0 3283 40 26 17 chr15 27985521 27985943 -57709811 - L1PA5 LINE L1 0 6154 5729 2334 96 7 0 chr15 27986495 27986798 -57708956 + AluSx SINE Alu 1 305 -7 688 112 0 0 chr15 27987465 27987563 -57708191 - AluSg/x SINE Alu -22 287 190 2229 102 13 0 chr15 27988303 27988606 -57707148 + AluSg SINE Alu 1 307 -3 286 164 16 16 chr15 27988624 27988685 -57707069 + L1MB4 LINE L1 5296 5356 -977 765 150 65 40 chr15 27988689 27988889 -57706865 + L1MB4 LINE L1 5975 6179 -1 450 153 12 0 chr15 27988898 27988983 -57706771 + L1MB8 LINE L1 6093 6178 0 1484 112 5 0 chr15 27989404 27989609 -57706145 - AluSg/x SINE Alu 0 310 105 390 175 0 16 chr15 27989609 27989672 -57706082 - AluS SINE Alu -238 62 1 2194 90 7 0 chr15 27989731 27990020 -57705734 - AluSc SINE Alu -18 291 1 2071 129 0 0 chr15 27990925 27991228 -57704526 - AluSx SINE Alu 0 305 3 1275 169 0 5 chr15 27991628 27991835 -57703919 + AluJb SINE Alu 93 298 -14 505 172 125 86 chr15 27992239 27992367 -57703387 + AluJ SINE Alu 1 133 -169 2290 115 0 0 chr15 27992781 27993093 -57702661 - AluSx SINE Alu 0 312 1 233 309 31 10 chr15 27993642 27993739 -57702015 + MER5A DNA MER1_type 89 187 -2 228 211 154 0 chr15 27993780 27993832 -57701922 + L2 LINE L2 3253 3312 -1 785 190 13 32 chr15 27994189 27994347 -57701407 + AluJ SINE Alu 140 294 -18 1958 97 0 117 chr15 27994351 27994703 -57701051 + AluSx SINE Alu 2 312 0 816 144 0 0 chr15 27995260 27995378 -57700376 + FLAM_C SINE Alu 1 118 -25 22 35 0 0 chr15 27995382 27995411 -57700343 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr15 27995515 27995544 -57700210 + AT_rich Low_complexity Low_complexity 1 29 0 396 246 62 39 chr15 27995546 27995676 -57700078 - MIR SINE MIR -2 260 128 235 140 0 35 chr15 27995846 27995903 -57699851 + (TA)n Simple_repeat Simple_repeat 2 56 0 267 298 12 0 chr15 27995936 27996020 -57699734 + (TA)n Simple_repeat Simple_repeat 1 85 0 481 299 136 6 chr15 27996031 27996208 -57699546 + MIR SINE MIR 20 219 -43 1023 207 42 92 chr15 27997408 27997765 -57697989 + L1MC4 LINE L1 7687 8025 -17 2397 68 13 10 chr15 27997776 27998086 -57697668 + AluY SINE Alu 1 311 0 225 189 40 54 chr15 27998106 27998180 -57697574 + L1MC/D LINE L1 5840 5912 -1896 233 293 49 0 chr15 27998461 27998543 -57697211 - L1M4 LINE L1 -1778 4368 4283 889 116 0 36 chr15 27998560 27998698 -57697056 - FLAM_C SINE Alu -10 133 1 417 256 198 60 chr15 27998698 27999202 -57696552 - L1M4 LINE L1 -1861 4285 3712 745 142 0 0 chr15 27999274 27999380 -57696374 + AluJ SINE Alu 2 107 -205 191 62 62 0 chr15 27999384 27999416 -57696338 + C-rich Low_complexity Low_complexity 3 36 0 1023 174 22 27 chr15 27999426 27999610 -57696144 + AluJ SINE Alu 108 290 -22 1902 146 7 14 chr15 27999617 27999932 -57695822 + AluSx SINE Alu 1 312 0 3647 199 66 101 chr15 27999950 28000576 -57695178 - L1MC4 LINE L1 -385 7657 7010 1848 141 20 10 chr15 28000576 28000873 -57694881 - AluJb SINE Alu -12 300 1 3647 199 66 101 chr15 28000873 28000957 -57694797 - L1MC4 LINE L1 -1032 7010 6925 2116 60 152 0 chr15 28000957 28001259 -57694495 - L1PA7 LINE L1 -1 6153 5806 3647 199 66 101 chr15 28001259 28001277 -57694477 - L1MC4 LINE L1 -1117 6925 6908 1663 157 30 13 chr15 28001277 28001576 -57694178 - AluJb SINE Alu -8 304 1 3647 199 66 101 chr15 28001576 28002088 -57693666 - L1MC4 LINE L1 -1134 6908 6459 568 244 8 0 chr15 28002320 28002439 -57693315 - FLAM_A SINE Alu -13 120 1 25 0 0 0 chr15 28002540 28002565 -57693189 + AT_rich Low_complexity Low_complexity 1 25 0 660 208 23 8 chr15 28002890 28003068 -57692686 + FLAM_C SINE Alu 1 180 0 2208 124 10 0 chr15 28003301 28003607 -57692147 - AluJb SINE Alu -3 309 1 1695 153 45 11 chr15 28003750 28004037 -57691717 + AluJb SINE Alu 1 297 -15 183 300 170 0 chr15 28004067 28004167 -57691587 - L2 LINE L2 0 3313 3197 795 132 0 76 chr15 28004243 28004387 -57691367 - FLAM_C SINE Alu 0 133 1 292 148 0 19 chr15 28004982 28005036 -57690718 - L1M4 LINE L1 -343 5835 5783 279 227 0 0 chr15 28005057 28005132 -57690622 - L1M4 LINE L1 -821 5353 5279 272 27 0 27 chr15 28005140 28005177 -57690577 - AluYa5 SINE Alu -103 198 163 505 173 75 8 chr15 28005314 28005447 -57690307 - AluSq/x SINE Alu -169 143 2 357 226 87 67 chr15 28005483 28005678 -57690076 + AluSq SINE Alu 2 200 -103 1030 110 12 61 chr15 28005726 28005889 -57689865 + AluSg/x SINE Alu 137 291 -21 2331 111 0 0 chr15 28005955 28006253 -57689501 + AluSx SINE Alu 1 298 -14 2392 108 0 0 chr15 28006859 28007166 -57688588 - AluSp SINE Alu -5 308 2 25 0 0 0 chr15 28007226 28007251 -57688503 + AT_rich Low_complexity Low_complexity 1 25 0 39 0 0 0 chr15 28007619 28007658 -57688096 + AT_rich Low_complexity Low_complexity 1 39 0 2543 81 7 0 chr15 28007835 28008145 -57687609 + AluSp SINE Alu 1 312 -1 2033 112 14 3 chr15 28008311 28008596 -57687158 - AluSx SINE Alu -24 288 1 59 38 0 0 chr15 28008982 28009062 -57686692 + AT_rich Low_complexity Low_complexity 1 80 0 2148 114 10 7 chr15 28009374 28009673 -57686081 + AluSx SINE Alu 2 301 -11 1998 109 72 0 chr15 28009816 28010092 -57685662 + AluSq SINE Alu 1 296 -17 422 181 90 95 chr15 28010611 28010678 -57685076 + MER5A DNA MER1_type 4 70 -119 2138 119 3 0 chr15 28010678 28010971 -57684783 + AluSx SINE Alu 1 294 -18 422 181 90 95 chr15 28010971 28011026 -57684728 + MER5A DNA MER1_type 70 124 -65 1844 181 3 7 chr15 28011026 28011335 -57684419 - AluJo SINE Alu -4 308 1 422 181 90 95 chr15 28011335 28011397 -57684357 + MER5A DNA MER1_type 124 188 -1 2290 103 0 13 chr15 28011582 28011882 -57683872 + AluSx SINE Alu 2 297 -15 583 76 19 95 chr15 28012817 28012843 -57682911 - AluJb SINE Alu -178 134 108 2012 142 3 0 chr15 28012843 28013138 -57682616 - AluSx SINE Alu -16 296 1 583 76 19 95 chr15 28013138 28013216 -57682538 - AluJb SINE Alu -204 108 38 1064 176 68 15 chr15 28013237 28013442 -57682312 - AluJo SINE Alu -12 300 85 30 0 0 24 chr15 28013442 28013457 -57682297 + AT_rich Low_complexity Low_complexity 1 15 -25 2150 125 0 0 chr15 28013457 28013746 -57682008 + AluSx SINE Alu 1 289 -23 30 0 0 24 chr15 28013746 28013771 -57681983 + AT_rich Low_complexity Low_complexity 15 40 0 1895 148 13 0 chr15 28013843 28014148 -57681606 + AluSc SINE Alu 1 309 0 2346 106 0 3 chr15 28014346 28014649 -57681105 - AluSx SINE Alu -10 302 1 248 120 0 20 chr15 28016110 28016160 -57679594 + LTR66 LTR ERVL 398 446 -164 644 235 0 22 chr15 28016828 28016964 -57678790 - FLAM_C SINE Alu 0 133 1 2402 82 3 0 chr15 28016974 28017267 -57678487 - AluY SINE Alu -17 294 1 1912 123 82 0 chr15 28017793 28018061 -57677693 - AluSg SINE Alu -20 290 1 394 225 0 0 chr15 28018593 28018673 -57677081 + MER116 DNA Mariner 1 80 0 215 252 0 62 chr15 28018990 28019073 -57676681 - MIR SINE MIR -49 159 81 905 249 93 70 chr15 28019129 28019498 -57676256 - L1MC4 LINE L1 -547 7495 7107 2210 105 6 16 chr15 28019498 28019812 -57675942 - AluSq SINE Alu -2 311 1 905 249 93 70 chr15 28019812 28019989 -57675765 - L1MC4 LINE L1 -935 7107 6936 978 98 0 0 chr15 28019995 28020118 -57675636 + AluSq/x SINE Alu 14 136 -177 2247 124 0 9 chr15 28020118 28020433 -57675321 + AluSx SINE Alu 1 312 0 315 354 93 0 chr15 28020437 28020598 -57675156 - L1MC4 LINE L1 -1124 6918 6743 291 200 124 19 chr15 28020670 28020775 -57674979 + L1MB8 LINE L1 5648 5763 -2045 283 337 87 22 chr15 28021125 28021309 -57674445 + MIR SINE MIR 5 200 -62 2425 100 0 0 chr15 28021468 28021777 -57673977 - AluSx SINE Alu -1 311 3 1765 176 25 0 chr15 28021787 28022105 -57673649 - L1MC1 LINE L1 0 6333 6008 729 181 0 7 chr15 28022107 28022256 -57673498 + L1MB8 LINE L1 6031 6178 0 2113 90 4 0 chr15 28022416 28022694 -57673060 + AluSp SINE Alu 34 312 -1 2239 102 0 3 chr15 28022720 28023013 -57672741 + AluSc SINE Alu 1 292 -17 1788 162 3 25 chr15 28023025 28023339 -57672415 + AluJb SINE Alu 5 311 -1 601 179 103 0 chr15 28023348 28023465 -57672289 + MER5A DNA MER1_type 61 189 0 730 182 0 8 chr15 28023480 28023601 -57672153 - FLAM_C SINE Alu -22 121 2 308 172 94 0 chr15 28023601 28023665 -57672089 - MER5A DNA MER1_type -111 78 9 2411 77 13 3 chr15 28023761 28024061 -57671693 + AluY SINE Alu 1 303 -8 719 152 0 0 chr15 28024290 28024402 -57671352 + FLAM_C SINE Alu 5 116 -17 184 284 90 0 chr15 28024421 28024488 -57671266 - MIR3 SINE MIR -23 185 113 2579 51 0 0 chr15 28024768 28025064 -57670690 - AluY SINE Alu -15 296 1 1679 81 0 18 chr15 28025468 28025689 -57670065 + AluSg/x SINE Alu 83 299 -11 1465 157 0 39 chr15 28025689 28025994 -57669760 + AluY SINE Alu 1 293 -18 433 214 140 13 chr15 28026241 28026470 -57669284 - AluYa5 SINE Alu -52 259 2 309 91 23 0 chr15 28026492 28026536 -57669218 - Charlie8 DNA MER1_type -6 2411 2367 414 0 0 0 chr15 28026730 28026776 -57668978 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1281 203 48 22 chr15 28026776 28027047 -57668707 - AluJo SINE Alu -34 278 1 745 208 0 8 chr15 28027142 28027272 -57668482 + FLAM_C SINE Alu 1 129 -14 2505 81 0 0 chr15 28027305 28027614 -57668140 + AluY SINE Alu 1 309 -2 230 289 66 0 chr15 28027644 28027720 -57668034 + MIR SINE MIR 41 121 -87 1636 189 55 32 chr15 28027905 28028102 -57667652 - MLT1A2 LTR MaLR 0 374 164 2134 123 13 0 chr15 28028102 28028402 -57667352 - AluSx SINE Alu -8 304 1 1636 189 55 32 chr15 28028402 28028547 -57667207 - MLT1A2 LTR MaLR -210 164 24 189 0 0 0 chr15 28028846 28028867 -57666887 + (TG)n Simple_repeat Simple_repeat 2 22 0 1544 161 4 0 chr15 28028867 28029099 -57666655 - AluJo SINE Alu -22 290 55 2138 125 6 3 chr15 28029179 28029490 -57666264 + AluSp SINE Alu 2 313 0 1990 123 17 3 chr15 28029497 28029789 -57665965 + AluSx SINE Alu 1 296 -16 2377 96 0 10 chr15 28029929 28030241 -57665513 + AluSx SINE Alu 1 309 -3 218 274 32 0 chr15 28030398 28030460 -57665294 + MIR3 SINE MIR 138 201 -7 2381 82 0 38 chr15 28030566 28030884 -57664870 - AluSg SINE Alu -2 308 3 2534 68 0 3 chr15 28031461 28031769 -57663985 + AluSg SINE Alu 2 308 -2 280 321 0 38 chr15 28033088 28033247 -57662507 + G-rich Low_complexity Low_complexity 4 156 0 429 287 173 32 chr15 28033853 28034073 -57661681 + L2 LINE L2 2511 2699 -614 2228 89 3 7 chr15 28034073 28034375 -57661379 + AluSc SINE Alu 1 301 -8 429 287 173 32 chr15 28034375 28034671 -57661083 + L2 LINE L2 2699 2952 -361 2520 77 3 0 chr15 28034671 28034981 -57660773 - AluSp SINE Alu -2 311 1 429 287 173 32 chr15 28034981 28035171 -57660583 + L2 LINE L2 2952 3309 -4 200 346 90 38 chr15 28035182 28035448 -57660306 - L2 LINE L2 -71 3201 2922 360 335 124 28 chr15 28035488 28036028 -57659726 - L2 LINE L2 -460 2854 2263 2335 111 0 0 chr15 28036127 28036425 -57659329 - AluSq SINE Alu -15 298 1 1549 151 33 15 chr15 28036554 28036825 -57658929 - AluJb SINE Alu -8 304 29 665 96 10 19 chr15 28036827 28036931 -57658823 + MER4A LTR ERV1 1 103 -561 379 132 53 13 chr15 28036937 28037013 -57658741 - MER5B DNA MER1_type -93 85 7 351 197 28 0 chr15 28037028 28037099 -57658655 + MER5A DNA MER1_type 3 75 -114 1106 61 0 0 chr15 28037100 28037232 -57658522 + AluY SINE Alu 1 132 -179 509 193 118 34 chr15 28037245 28037364 -57658390 + MER5A DNA MER1_type 61 189 0 187 301 96 14 chr15 28037372 28037445 -57658309 - MER5B DNA MER1_type 0 178 100 1271 207 66 47 chr15 28037455 28037706 -57658048 + L1M4 LINE L1 2501 2763 -3383 2596 71 0 0 chr15 28037706 28038016 -57657738 - AluY SINE Alu -1 310 1 1271 207 66 47 chr15 28038016 28038126 -57657628 + L1M4 LINE L1 2763 2869 -3277 358 172 0 0 chr15 28038131 28038189 -57657565 + AluS SINE Alu 2 59 -249 249 174 22 0 chr15 28038404 28038450 -57657304 + MER5A DNA MER1_type 22 68 -121 1910 122 0 7 chr15 28038487 28038757 -57656997 + AluSq SINE Alu 1 268 -45 2341 99 0 3 chr15 28038800 28039102 -57656652 - AluSq SINE Alu -12 301 1 1760 131 11 8 chr15 28039102 28039362 -57656392 - AluSx SINE Alu -10 302 42 448 164 0 0 chr15 28039362 28039435 -57656319 - AluJ/FLAM SINE Alu -239 73 1 688 178 0 0 chr15 28039460 28039567 -57656187 + FLAM_C SINE Alu 3 109 -34 854 150 7 7 chr15 28039606 28039746 -57656008 + AluSc SINE Alu 10 149 -160 388 197 0 13 chr15 28040861 28040937 -57654817 + AluSc SINE Alu 116 190 -109 676 234 70 0 chr15 28041048 28041206 -57654548 + FRAM SINE Alu 1 162 -14 2304 112 3 0 chr15 28041217 28041522 -57654232 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr15 28041522 28041542 -57654212 + (TA)n Simple_repeat Simple_repeat 2 21 0 934 181 77 22 chr15 28041543 28041823 -57653931 + L1M4 LINE L1 5140 5429 -737 676 117 0 0 chr15 28041863 28041957 -57653797 - AluSg/x SINE Alu -21 288 195 2736 107 9 27 chr15 28042103 28042689 -57653065 - L1MA7 LINE L1 -1 6290 5620 2198 92 3 3 chr15 28042790 28043094 -57652660 + AluSq SINE Alu 2 305 0 2257 109 0 6 chr15 28043619 28043930 -57651824 - AluSq SINE Alu -4 309 1 2266 101 0 0 chr15 28044350 28044638 -57651116 + AluSg SINE Alu 1 288 -22 2207 132 0 0 chr15 28044819 28045129 -57650625 + AluSx SINE Alu 1 310 -2 1820 152 11 3 chr15 28045434 28045717 -57650037 - AluJb SINE Alu -27 285 1 555 104 0 0 chr15 28046042 28046119 -57649635 + AluS SINE Alu 1 77 -236 1139 89 7 0 chr15 28047065 28047211 -57648543 - AluSq/x SINE Alu -164 149 3 21 0 0 0 chr15 28047716 28047737 -57648017 + AT_rich Low_complexity Low_complexity 1 21 0 740 269 0 0 chr15 28047737 28047893 -57647861 - AluSg/x SINE Alu -23 289 134 2196 121 16 0 chr15 28047911 28048216 -57647538 - AluSx SINE Alu -2 310 1 733 254 30 13 chr15 28048239 28048471 -57647283 - L1ME3A LINE L1 -8 6162 5927 573 190 109 22 chr15 28048474 28048611 -57647143 - MER63 DNA MER1_type -61 775 1 906 263 72 90 chr15 28048613 28048723 -57647031 - L2 LINE L2 -68 3245 3135 1712 168 70 3 chr15 28048723 28049009 -57646745 + AluJo SINE Alu 1 305 -7 906 263 72 90 chr15 28049009 28049399 -57646355 - L2 LINE L2 -178 3135 2779 2196 121 3 0 chr15 28049403 28049692 -57646062 - AluSg SINE Alu -18 292 3 2325 105 3 3 chr15 28049820 28050133 -57645621 - AluSq SINE Alu 0 313 1 974 200 31 0 chr15 28050170 28050365 -57645389 - MER3 DNA MER1_type -1 208 8 1478 194 0 32 chr15 28051378 28051662 -57644092 + AluJo SINE Alu 11 285 -27 252 0 0 0 chr15 28051663 28051691 -57644063 + (TA)n Simple_repeat Simple_repeat 1 28 0 2154 91 40 13 chr15 28051761 28052059 -57643695 + AluSq SINE Alu 1 306 -7 599 146 64 0 chr15 28052140 28052250 -57643504 - MER94 DNA DNA -17 117 1 2300 115 0 3 chr15 28053665 28053969 -57641785 + AluSx SINE Alu 1 303 -9 2161 130 0 7 chr15 28054108 28054416 -57641338 + AluSx SINE Alu 5 310 -2 2455 77 0 0 chr15 28054457 28054754 -57641000 + AluY SINE Alu 1 297 -14 207 301 12 0 chr15 28054803 28054886 -57640868 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2210 126 10 0 chr15 28055155 28055456 -57640298 - AluSx SINE Alu -8 304 1 373 326 81 20 chr15 28055622 28055899 -57639855 - L1M4 LINE L1 -1059 5087 4795 2284 98 0 0 chr15 28056483 28056778 -57638976 - AluSc SINE Alu -13 296 2 275 261 0 108 chr15 28056867 28056922 -57638832 + MLT1L LTR MaLR 349 388 -227 2171 105 30 0 chr15 28056922 28057217 -57638537 - AluSq SINE Alu -9 304 1 275 261 0 108 chr15 28057217 28057272 -57638482 + MLT1L LTR MaLR 388 447 -168 1001 126 0 0 chr15 28057273 28057408 -57638346 + AluSq/x SINE Alu 1 135 -178 2207 120 3 0 chr15 28057408 28057716 -57638038 + AluSp SINE Alu 1 309 -4 435 222 192 78 chr15 28057835 28057956 -57637798 + MER5A DNA MER1_type 4 110 -79 2064 142 0 3 chr15 28057956 28058252 -57637502 - AluJb SINE Alu -17 295 1 2396 65 0 0 chr15 28058260 28058554 -57637200 - AluY SINE Alu -17 294 1 435 222 192 78 chr15 28058554 28058590 -57637164 + MER5A DNA MER1_type 116 189 0 333 323 58 26 chr15 28058651 28058711 -57637043 + MIR SINE MIR 86 143 -119 4909 73 19 29 chr15 28058711 28058961 -57636793 - LTR8 LTR ERV1 -2 689 438 2085 116 3 7 chr15 28058961 28059262 -57636492 - AluSg SINE Alu -10 300 1 4909 73 19 29 chr15 28059262 28059707 -57636047 - LTR8 LTR ERV1 -253 438 1 333 323 58 26 chr15 28059707 28059801 -57635953 + MIR SINE MIR 143 245 -17 2000 111 73 0 chr15 28059804 28060092 -57635662 + AluSx SINE Alu 1 309 -3 2074 108 0 30 chr15 28061340 28061645 -57634109 + AluSx SINE Alu 1 296 -16 2081 137 0 13 chr15 28061889 28062202 -57633552 - AluSx SINE Alu -3 309 1 627 293 61 56 chr15 28062234 28062630 -57633124 - MLT1J2 LTR MaLR -44 406 9 2275 78 3 0 chr15 28062728 28063040 -57632714 - AluSx SINE Alu 0 313 1 950 96 0 0 chr15 28063064 28063189 -57632565 - FLAM_C SINE Alu -8 125 1 1884 124 13 0 chr15 28063833 28064140 -57631614 - MER2 DNA MER2_type -34 311 1 3743 183 83 15 chr15 28064140 28064453 -57631301 + MER21B LTR ERV1 16 306 -557 2266 95 3 0 chr15 28064453 28064747 -57631007 + AluSg SINE Alu 1 295 -15 3743 183 83 15 chr15 28064747 28065224 -57630530 + MER21B LTR ERV1 306 860 -3 909 137 8 0 chr15 28065232 28065363 -57630391 - FLAM_C SINE Alu -11 132 1 2292 109 3 0 chr15 28065363 28065666 -57630088 - AluSq SINE Alu -1 312 9 495 284 65 48 chr15 28066088 28066234 -57629520 - MIR SINE MIR -10 252 99 1950 126 7 0 chr15 28066234 28066511 -57629243 + AluSg SINE Alu 11 289 -21 495 284 65 48 chr15 28066511 28066593 -57629161 - MIR SINE MIR -163 99 20 632 124 0 0 chr15 28066668 28066757 -57628997 + AluS SINE Alu 1 89 -224 2044 125 7 7 chr15 28066888 28067185 -57628569 + AluSq SINE Alu 1 297 -16 271 259 32 51 chr15 28067196 28067354 -57628400 - L1ME LINE L1 -317 5804 5650 356 148 0 0 chr15 28067513 28067567 -57628187 + Alu SINE Alu 1 54 -248 1330 120 0 11 chr15 28067568 28067759 -57627995 - AluSx SINE Alu -89 223 35 30 83 0 0 chr15 28067802 28067874 -57627880 + AT_rich Low_complexity Low_complexity 1 72 0 221 272 99 12 chr15 28068049 28068130 -57627624 - MIR SINE MIR -95 113 26 2305 108 16 0 chr15 28068204 28068511 -57627243 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 28070154 28070176 -57625578 + AT_rich Low_complexity Low_complexity 1 22 0 1320 184 0 0 chr15 28072626 28072838 -57622916 - AluJb SINE Alu -15 297 86 27 29 0 0 chr15 28072918 28072952 -57622802 + AT_rich Low_complexity Low_complexity 1 34 0 2270 93 3 7 chr15 28073755 28074057 -57621697 + AluSc SINE Alu 2 302 -7 21 0 0 0 chr15 28074218 28074239 -57621515 + AT_rich Low_complexity Low_complexity 1 21 0 2232 117 7 7 chr15 28074916 28075224 -57620530 + AluSx SINE Alu 1 308 -4 1492 137 26 36 chr15 28075421 28075727 -57620027 + AluSq SINE Alu 1 303 -10 1760 119 0 0 chr15 28076204 28076440 -57619314 + AluSq SINE Alu 55 290 -23 685 166 53 152 chr15 28077013 28077221 -57618533 + L1MB7 LINE L1 5919 6093 -91 1595 151 0 9 chr15 28077221 28077453 -57618301 - AluSx SINE Alu -19 293 64 685 166 53 152 chr15 28077453 28077527 -57618227 + L1MB7 LINE L1 6093 6173 -11 1848 129 56 3 chr15 28077544 28077663 -57618091 + AluSx SINE Alu 1 112 -200 287 24 0 24 chr15 28077663 28077704 -57618050 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1848 129 56 3 chr15 28077704 28077870 -57617884 + AluSx SINE Alu 112 301 -11 1132 119 0 6 chr15 28077872 28078032 -57617722 + AluSq SINE Alu 136 294 -19 1340 185 10 36 chr15 28078173 28078475 -57617279 - AluJo SINE Alu -18 294 1 2305 60 0 0 chr15 28078819 28079116 -57616638 + AluY SINE Alu 15 311 0 1787 160 44 15 chr15 28079130 28079468 -57616286 - L1PB4 LINE L1 -7 6149 5802 1967 153 0 7 chr15 28079715 28080022 -57615732 - AluJb SINE Alu -7 305 1 28 71 0 0 chr15 28080157 28080213 -57615541 + AT_rich Low_complexity Low_complexity 1 56 0 1544 94 21 39 chr15 28080691 28080925 -57614829 - MER30 DNA MER1_type 0 230 1 2219 101 0 13 chr15 28081149 28081457 -57614297 + AluSp SINE Alu 1 304 -9 1899 31 9 4 chr15 28081459 28081685 -57614069 + AluY SINE Alu 83 309 -2 24 32 0 0 chr15 28081912 28081943 -57613811 + AT_rich Low_complexity Low_complexity 1 31 0 1265 174 71 123 chr15 28081954 28082251 -57613503 + Charlie1b DNA MER1_type 1 258 -2503 2092 123 3 0 chr15 28082251 28082560 -57613194 + AluSq SINE Alu 1 310 0 1265 174 71 123 chr15 28082560 28082813 -57612941 + Charlie1b DNA MER1_type 258 523 0 22 0 0 0 chr15 28082943 28082965 -57612789 + AT_rich Low_complexity Low_complexity 1 22 0 2276 124 0 0 chr15 28083106 28083413 -57612341 + AluSx SINE Alu 1 307 -5 2293 96 7 0 chr15 28083634 28083936 -57611818 + AluSc SINE Alu 1 304 -5 189 107 0 0 chr15 28084292 28084320 -57611434 + (A)n Simple_repeat Simple_repeat 1 28 0 945 295 97 8 chr15 28085147 28085537 -57610217 + MER20B DNA MER1_type 68 492 -291 1024 200 120 47 chr15 28085928 28086203 -57609551 - AluJo SINE Alu -7 295 1 645 228 148 10 chr15 28086570 28086873 -57608881 + MER20B DNA MER1_type 439 783 0 317 295 31 61 chr15 28087262 28087523 -57608231 - L1ME4a LINE L1 0 6121 5869 1068 297 202 9 chr15 28087619 28088372 -57607382 - L2 LINE L2 -7 3306 2367 1646 168 20 14 chr15 28088815 28089107 -57606647 - AluJo SINE Alu -17 295 2 482 298 128 25 chr15 28089226 28089585 -57606169 - L1ME4a LINE L1 -5 6116 5721 290 245 41 10 chr15 28089587 28089685 -57606069 - L1ME4a LINE L1 -435 5686 5586 1526 204 0 0 chr15 28089771 28090040 -57605714 - AluJb SINE Alu -8 304 36 301 286 43 36 chr15 28090040 28090180 -57605574 - L1ME4a LINE L1 -2398 5410 5270 338 264 80 16 chr15 28090192 28090317 -57605437 + MIR SINE MIR 104 236 -26 2154 126 7 0 chr15 28090362 28090664 -57605090 - AluSx SINE Alu -8 304 1 977 153 19 6 chr15 28091185 28091342 -57604412 - AluJo/FRAM SINE Alu -20 292 134 1757 171 31 0 chr15 28091342 28091629 -57604125 - AluJb SINE Alu -16 296 1 267 152 0 0 chr15 28091831 28091877 -57603877 + (CATA)n Simple_repeat Simple_repeat 3 48 0 205 208 26 0 chr15 28092085 28092162 -57603592 + (TA)n Simple_repeat Simple_repeat 1 79 0 1946 139 36 0 chr15 28092524 28092825 -57602929 + AluSx SINE Alu 1 312 0 308 295 67 0 chr15 28094024 28094129 -57601625 - L1MC4a LINE L1 -1845 5963 5852 359 365 84 0 chr15 28094215 28094453 -57601301 - L1MC4a LINE L1 -2075 5733 5476 2032 121 0 21 chr15 28094539 28094856 -57600898 + AluSx SINE Alu 1 311 0 22 35 0 0 chr15 28095465 28095494 -57600260 + AT_rich Low_complexity Low_complexity 1 29 0 2275 107 3 3 chr15 28095538 28095848 -57599906 + AluY SINE Alu 1 310 -1 2348 84 0 0 chr15 28095896 28096194 -57599560 + AluY SINE Alu 13 310 -1 1941 124 3 13 chr15 28096200 28096506 -57599248 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr15 28096784 28096805 -57598949 + AT_rich Low_complexity Low_complexity 1 21 0 1897 158 3 0 chr15 28097042 28097340 -57598414 - AluSp SINE Alu -14 299 1 718 220 112 58 chr15 28098417 28098736 -57597018 + LTR54 LTR ERV1 78 482 -28 1994 144 7 0 chr15 28098737 28099042 -57596712 + AluSx SINE Alu 1 307 -5 1072 209 103 19 chr15 28099159 28099422 -57596332 + LTR40b LTR ERVL 178 462 0 1054 77 0 0 chr15 28099742 28099872 -57595882 - AluSp SINE Alu -17 296 167 868 146 18 30 chr15 28100278 28100443 -57595311 - AluSp SINE Alu -150 163 1 794 139 0 0 chr15 28101045 28101188 -57594566 + FLAM_A SINE Alu 8 150 0 2307 112 0 0 chr15 28101233 28101545 -57594209 + AluSx SINE Alu 1 312 0 2289 119 0 3 chr15 28101630 28101932 -57593822 + AluSx SINE Alu 1 301 -11 890 142 0 22 chr15 28101941 28102075 -57593679 + FLAM_C SINE Alu 1 131 -2 287 175 0 79 chr15 28102094 28102157 -57593597 - L2 LINE L2 -45 3268 3211 902 279 29 16 chr15 28102384 28102464 -57593290 - MER115 DNA AcHobo -2 691 613 2534 56 0 0 chr15 28102464 28102767 -57592987 + AluY SINE Alu 1 303 -8 902 279 29 16 chr15 28102767 28102930 -57592824 - MER115 DNA AcHobo -80 613 445 3395 225 73 9 chr15 28102958 28103757 -57591997 + MER21B LTR ERV1 3 852 -11 1290 301 37 32 chr15 28103789 28104224 -57591530 - MER115 DNA AcHobo -256 437 1 2204 114 0 3 chr15 28104253 28104552 -57591202 - AluSg SINE Alu -11 299 2 1344 158 27 5 chr15 28105060 28105282 -57590472 - AluSx SINE Alu -1 309 83 584 133 0 0 chr15 28105423 28105498 -57590256 - AluSx SINE Alu -237 76 2 2380 102 0 6 chr15 28105502 28105815 -57589939 - AluSx SINE Alu -1 311 1 355 327 39 18 chr15 28105851 28105979 -57589775 - MIR SINE MIR -81 127 2 1989 129 3 10 chr15 28106000 28106313 -57589441 - AluSx SINE Alu 0 312 1 1853 114 12 4 chr15 28106666 28106921 -57588833 + AluSg SINE Alu 1 257 -53 935 128 0 0 chr15 28107044 28107169 -57588585 - AluSq/x SINE Alu -188 125 1 611 349 24 8 chr15 28107228 28107480 -57588274 - MIR SINE MIR 0 262 7 580 173 90 38 chr15 28108140 28108255 -57587499 - Charlie1b DNA MER1_type -2238 523 399 2603 78 15 0 chr15 28108255 28108590 -57587164 + L1PA14 LINE L1 5804 6143 -18 580 173 90 38 chr15 28108590 28108607 -57587147 - Charlie1b DNA MER1_type -2362 399 384 246 287 49 16 chr15 28108661 28108783 -57586971 - MER50 LTR ERV1 -23 711 586 2328 88 3 0 chr15 28110302 28110607 -57585147 + AluSq SINE Alu 1 306 -7 404 204 82 31 chr15 28110613 28110711 -57585043 - Charlie1a DNA MER1_type -721 734 632 * 783 199 54 38 chr15 28110706 28110892 -57584862 - Charlie1a DNA MER1_type -1266 189 1 652 206 231 58 chr15 28110893 28111190 -57584564 + L1MC5 LINE L1 7183 7566 -395 1812 137 48 20 chr15 28111190 28111483 -57584271 + AluSx SINE Alu 1 301 -11 652 206 231 58 chr15 28111483 28111579 -57584175 + L1MC5 LINE L1 7566 7644 -317 202 219 0 24 chr15 28112315 28112356 -57583398 - L2 LINE L2 -93 3179 3140 2231 97 7 3 chr15 28112596 28112885 -57582869 - AluSx SINE Alu -22 290 1 823 196 0 20 chr15 28113203 28113351 -57582403 + AluJo SINE Alu 1 145 -167 1976 171 0 0 chr15 28113354 28113664 -57582090 + AluSx SINE Alu 3 312 0 937 164 0 31 chr15 28113666 28113825 -57581929 + AluJo SINE Alu 120 273 -39 1939 153 0 29 chr15 28113832 28114000 -57581754 - AluJb SINE Alu -10 302 146 2290 89 7 3 chr15 28114000 28114292 -57581462 - AluSg SINE Alu -17 293 1 1939 153 0 29 chr15 28114292 28114430 -57581324 - AluJb SINE Alu -166 146 5 342 0 0 0 chr15 28114439 28114477 -57581277 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 768 274 18 53 chr15 28114491 28114717 -57581037 + MIR SINE MIR 37 254 -8 1869 112 0 0 chr15 28114728 28114977 -57580777 + AluSg SINE Alu 55 303 -7 201 121 0 0 chr15 28115465 28115498 -57580256 + (A)n Simple_repeat Simple_repeat 1 33 0 186 133 0 0 chr15 28116774 28116804 -57578950 + (A)n Simple_repeat Simple_repeat 1 30 0 2404 84 0 3 chr15 28116838 28117137 -57578617 - AluSp SINE Alu -15 298 1 623 257 44 0 chr15 28117246 28117429 -57578325 - L2 LINE L2 0 3313 3123 228 147 0 0 chr15 28117429 28117463 -57578291 + Alu SINE Alu 1 34 -268 2256 110 10 0 chr15 28117805 28118105 -57577649 + AluY SINE Alu 1 303 -8 1074 113 0 0 chr15 28118892 28119034 -57576720 + AluSq/x SINE Alu 1 142 -170 2476 68 0 0 chr15 28119035 28119331 -57576423 + AluSg SINE Alu 1 296 -14 2218 92 3 23 chr15 28119616 28119920 -57575834 + AluSg SINE Alu 1 298 -12 232 87 0 43 chr15 28119926 28119972 -57575782 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 2415 72 0 7 chr15 28121088 28121393 -57574361 + AluSq SINE Alu 1 303 -10 259 114 0 0 chr15 28122301 28122336 -57573418 - tRNA-Met-e tRNA tRNA -40 35 1 2228 90 13 19 chr15 28122778 28123090 -57572664 - AluSg SINE Alu 0 310 1 2166 103 3 13 chr15 28123547 28123848 -57571906 - AluY SINE Alu -13 298 1 2343 75 10 0 chr15 28123882 28124174 -57571580 - AluSg SINE Alu -15 295 1 2420 59 3 0 chr15 28125183 28125472 -57570282 + AluY SINE Alu 1 290 -21 23 68 0 0 chr15 28125881 28125925 -57569829 + AT_rich Low_complexity Low_complexity 1 44 0 2859 3 0 3 chr15 28126182 28126491 -57569263 - AluYa8 SINE Alu -2 308 1 336 203 0 0 chr15 28126495 28126559 -57569195 + MIR3 SINE MIR 120 183 -25 21 0 0 0 chr15 28127091 28127112 -57568642 + AT_rich Low_complexity Low_complexity 1 21 0 2194 114 3 0 chr15 28127242 28127539 -57568215 - AluSg SINE Alu -11 299 2 2399 89 3 0 chr15 28128237 28128539 -57567215 - AluSp SINE Alu -9 304 2 932 102 8 0 chr15 28128772 28128899 -57566855 - L1MA1 LINE L1 -9 6293 6166 2511 71 0 3 chr15 28128940 28129249 -57566505 + AluSg SINE Alu 1 308 -2 305 314 0 38 chr15 28130568 28130727 -57565027 + G-rich Low_complexity Low_complexity 4 156 0 305 264 212 35 chr15 28131327 28131547 -57564207 + L2 LINE L2 2511 2691 -623 2209 89 3 7 chr15 28131547 28131849 -57563905 + AluSc SINE Alu 1 301 -8 305 264 212 35 chr15 28131849 28132025 -57563729 + L2 LINE L2 2691 2977 -337 270 0 0 0 chr15 28132207 28132237 -57563517 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1916 128 25 0 chr15 28132237 28132511 -57563243 - AluSx SINE Alu -31 281 1 23 78 0 0 chr15 28132745 28132796 -57562958 + AT_rich Low_complexity Low_complexity 1 51 0 1150 154 166 24 chr15 28133104 28133351 -57562403 - AluJo SINE Alu -8 304 23 1754 137 6 76 chr15 28133802 28134117 -57561637 - AluJb SINE Alu -19 293 1 286 235 284 0 chr15 28134129 28134210 -57561544 + MLT1B LTR MaLR 3 106 -361 1330 212 26 55 chr15 28134210 28134555 -57561199 + MLT1B LTR MaLR 56 390 0 688 251 145 60 chr15 28134588 28135186 -57560568 + L2 LINE L2 2596 3231 -82 2229 111 7 0 chr15 28135249 28135547 -57560207 + AluSx SINE Alu 1 300 -12 818 236 103 15 chr15 28135795 28135915 -57559839 - MER58A DNA MER1_type -2199 221 113 2411 127 16 26 chr15 28135915 28136294 -57559460 + THE1C LTR MaLR 1 375 0 818 236 103 15 chr15 28136294 28136376 -57559378 - MER58A DNA MER1_type -2307 113 1 2181 100 7 0 chr15 28136541 28136830 -57558924 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr15 28137595 28137623 -57558131 + AT_rich Low_complexity Low_complexity 1 28 0 2162 121 20 0 chr15 28138052 28138358 -57557396 + AluSq SINE Alu 1 312 -1 2104 113 13 3 chr15 28138514 28138816 -57556938 + AluY SINE Alu 1 305 -6 768 210 49 6 chr15 28138821 28138983 -57556771 - MER2 DNA MER2_type -1 344 176 816 153 38 8 chr15 28138994 28139125 -57556629 - AluJo SINE Alu -176 136 2 704 176 197 0 chr15 28139126 28139268 -57556486 - MER2 DNA MER2_type -175 170 1 352 190 66 7 chr15 28139268 28139405 -57556349 + L1MEc LINE L1 2093 2237 -4159 386 260 65 7 chr15 28139466 28139650 -57556104 + L1MEc LINE L1 2379 2572 -3643 30 27 0 0 chr15 28140028 28140065 -57555689 + AT_rich Low_complexity Low_complexity 1 37 0 1325 211 23 20 chr15 28140215 28140518 -57555236 + AluJo SINE Alu 9 312 0 732 213 10 55 chr15 28140519 28140721 -57555033 + L1ME1 LINE L1 5795 5987 -179 1125 296 44 52 chr15 28140735 28140963 -57554791 + L1MEc LINE L1 216 444 -5952 2355 94 10 3 chr15 28140963 28141272 -57554482 + AluSx SINE Alu 1 311 -1 1125 296 44 52 chr15 28141272 28141463 -57554291 + L1MEc LINE L1 444 635 -5761 2159 140 0 0 chr15 28141463 28141771 -57553983 + AluSx SINE Alu 1 308 -4 1125 296 44 52 chr15 28141771 28141957 -57553797 + L1MEc LINE L1 635 817 -5579 1704 186 7 0 chr15 28141957 28142258 -57553496 + AluJb SINE Alu 1 303 -9 1125 296 44 52 chr15 28142258 28142384 -57553370 + L1MEc LINE L1 817 943 -5453 1241 154 107 74 chr15 28142415 28142714 -57553040 + AluSg SINE Alu 2 310 0 1292 103 16 11 chr15 28142748 28142932 -57552822 + AluSc SINE Alu 90 274 -35 203 0 0 36 chr15 28142939 28142967 -57552787 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 560 189 60 31 chr15 28142969 28143102 -57552652 + L1MEc LINE L1 3081 3224 -2991 2274 107 13 0 chr15 28143102 28143410 -57552344 + AluSx SINE Alu 1 312 0 560 189 60 31 chr15 28143410 28143520 -57552234 + L1MEc LINE L1 3224 3329 -2886 343 121 0 0 chr15 28143535 28143594 -57552160 + Alu SINE Alu 247 299 -3 547 249 37 6 chr15 28143594 28143787 -57551967 + L1MEc LINE L1 3556 3756 -2459 628 200 9 0 chr15 28143790 28143900 -57551854 + FLAM_A SINE Alu 20 130 -12 1556 154 62 41 chr15 28143931 28144223 -57551531 + AluJb SINE Alu 1 298 -14 848 141 16 0 chr15 28144223 28144351 -57551403 + BC200 scRNA scRNA 4 133 -67 356 213 13 0 chr15 28144352 28144427 -57551327 + L1MEc LINE L1 3986 4061 -2154 310 273 0 0 chr15 28144474 28144540 -57551214 + MER77 LTR ERV1 540 605 0 783 274 91 58 chr15 28144540 28145219 -57550535 + L1MEc LINE L1 102 757 -5448 2254 92 14 3 chr15 28145219 28145513 -57550241 + AluSx SINE Alu 1 297 -15 783 274 91 58 chr15 28145513 28145768 -57549986 + L1MEc LINE L1 757 1036 -5169 2233 100 3 13 chr15 28145768 28146079 -57549675 + AluY SINE Alu 1 308 -3 783 274 91 58 chr15 28146079 28146199 -57549555 + L1MEc LINE L1 1036 1151 -5054 2138 133 3 0 chr15 28146205 28146514 -57549240 + AluSg SINE Alu 1 310 0 997 230 32 81 chr15 28146515 28146767 -57548987 + L1M2 LINE L1 1371 1634 -4582 2017 134 20 13 chr15 28146767 28147073 -57548681 + AluSg SINE Alu 1 308 -2 997 230 32 81 chr15 28147073 28147337 -57548417 + L1M2 LINE L1 1634 1966 -4250 1541 162 9 115 chr15 28147347 28147687 -57548067 - AluJb SINE Alu -8 304 1 2336 81 3 0 chr15 28148093 28148378 -57547376 + AluSx SINE Alu 1 286 -26 671 171 7 36 chr15 28148514 28148654 -57547100 - MER50 LTR ERV1 -156 578 443 4244 118 188 88 chr15 28148658 28149948 -57545806 + pTR5 LTR ERV1 742 2295 -143 1966 141 70 27 chr15 28149962 28150374 -57545380 - MER50 LTR ERV1 -295 439 10 1491 179 16 82 chr15 28150708 28151148 -57544606 - Charlie1b DNA MER1_type -112 411 1 3113 133 9 11 chr15 28151266 28151479 -57544275 - L1MB3 LINE L1 -7 6176 5964 1681 147 10 38 chr15 28151479 28151792 -57543962 - AluJo SINE Alu -8 304 1 3113 133 9 11 chr15 28151792 28152104 -57543650 - L1MB3 LINE L1 -219 5964 5652 529 152 0 0 chr15 28152144 28152236 -57543518 - L1MB3 LINE L1 -522 5661 5570 180 0 0 0 chr15 28152306 28152326 -57543428 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2230 109 6 3 chr15 28152591 28152902 -57542852 + AluSx SINE Alu 1 312 0 315 0 0 0 chr15 28153885 28153920 -57541834 + (CA)n Simple_repeat Simple_repeat 1 35 0 2225 102 7 0 chr15 28154089 28154384 -57541370 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 28154738 28154808 -57540946 + CT-rich Low_complexity Low_complexity 2 70 0 1858 237 131 27 chr15 28154868 28155564 -57540190 + LTR50 LTR ERVL 4 771 -24 2457 74 3 6 chr15 28155604 28155916 -57539838 - AluSp SINE Alu -2 311 1 282 234 144 58 chr15 28157042 28157230 -57538524 - L1ME LINE L1 -372 5749 5546 2126 112 0 14 chr15 28157361 28157681 -57538073 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 28158276 28158301 -57537453 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 383 305 122 89 chr15 28158908 28159302 -57536452 + HAL1 LINE L1 1338 1744 -763 22 0 0 0 chr15 28160672 28160694 -57535060 + AT_rich Low_complexity Low_complexity 1 22 0 262 220 85 0 chr15 28160773 28160832 -57534922 + MER91 DNA MER1_type 1 64 -76 1070 166 50 55 chr15 28161006 28161325 -57534429 - MER33 DNA MER1_type -16 308 1 383 275 55 0 chr15 28161461 28161603 -57534151 + L1ME LINE L1 5434 5581 -540 249 209 0 0 chr15 28161736 28161803 -57533951 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 274 57 8 chr15 28162906 28163030 -57532724 + LTR67 LTR ERVL 425 554 -3 237 247 130 0 chr15 28163406 28163483 -57532271 - L3 LINE CR1 -162 1415 1329 1187 321 116 30 chr15 28163497 28163654 -57532100 - L3 LINE CR1 -785 792 650 2360 96 0 3 chr15 28163654 28163955 -57531799 + AluSg SINE Alu 1 300 -10 1187 321 116 30 chr15 28163955 28164420 -57531334 - L3 LINE CR1 -927 650 117 1951 154 3 3 chr15 28164547 28164833 -57530921 - AluJb SINE Alu -24 288 3 332 247 105 40 chr15 28164913 28165160 -57530594 - L1ME4a LINE L1 -4 6117 5855 2333 91 7 0 chr15 28165190 28165487 -57530267 - AluSq SINE Alu -14 299 1 313 306 110 58 chr15 28165755 28165928 -57529826 - MIR SINE MIR -71 191 10 1942 95 7 3 chr15 28166210 28166493 -57529261 + L1PB2 LINE L1 5865 6148 -3 1299 119 0 0 chr15 28166661 28166846 -57528908 - AluSg/x SINE Alu -11 301 117 2238 101 0 3 chr15 28167908 28168204 -57527550 + AluSc SINE Alu 7 301 -8 1559 185 35 78 chr15 28168513 28168686 -57527068 - MLT1C LTR MaLR -1 466 287 2179 115 7 0 chr15 28168686 28168991 -57526763 - AluSx SINE Alu -4 308 2 1559 185 35 78 chr15 28168991 28169209 -57526545 - MLT1C LTR MaLR -180 287 98 1701 94 75 130 chr15 28169209 28169540 -57526214 - AluSp SINE Alu 0 313 1 1559 185 35 78 chr15 28169540 28169634 -57526120 - MLT1C LTR MaLR -369 98 1 874 279 24 34 chr15 28170388 28170596 -57525158 - AluY SINE Alu -12 299 94 1262 119 0 0 chr15 28171243 28171403 -57524351 - AluSx SINE Alu -152 160 1 508 268 47 22 chr15 28171405 28171681 -57524073 - L1MC5 LINE L1 -178 7783 7501 226 167 48 0 chr15 28171772 28171814 -57523940 - MER20 DNA MER1_type -175 44 1 263 181 83 0 chr15 28171848 28171920 -57523834 - L1MC4 LINE L1 -1350 6692 6615 240 234 130 0 chr15 28171851 28171928 -57523826 + L1MC4 LINE L1 6614 6700 -1342 * 306 245 0 82 chr15 28171967 28172065 -57523689 - L1MC4 LINE L1 -1339 6703 6614 230 264 23 0 chr15 28172081 28172168 -57523586 + L1MC4 LINE L1 6614 6702 -1340 * 242 267 12 0 chr15 28172129 28172215 -57523539 - L1MC4 LINE L1 -1341 6701 6615 240 167 0 0 chr15 28172218 28172266 -57523488 + (TA)n Simple_repeat Simple_repeat 2 49 0 229 261 0 22 chr15 28172266 28172358 -57523396 + L1MC4 LINE L1 6614 6703 -1339 1990 127 40 0 chr15 28172368 28172668 -57523086 + AluSx SINE Alu 1 312 0 245 314 33 33 chr15 28172843 28172996 -57522758 - L1MC4a LINE L1 -412 7396 7244 569 223 54 22 chr15 28173020 28173244 -57522510 - L1MC5 LINE L1 -738 7223 6993 364 259 6 82 chr15 28173284 28173380 -57522374 - L1MC4 LINE L1 -945 7097 7016 1836 162 10 7 chr15 28173380 28173683 -57522071 - AluJb SINE Alu -8 304 1 364 259 6 82 chr15 28173683 28173744 -57522010 - L1MC4 LINE L1 -1026 7016 6952 423 0 0 0 chr15 28173857 28173904 -57521850 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2289 114 0 0 chr15 28173955 28174252 -57521502 + AluSq SINE Alu 1 297 -16 5154 185 47 24 chr15 28174273 28174637 -57521117 - L1MC1 LINE L1 -89 6244 5890 9161 97 11 9 chr15 28174637 28175922 -57519832 - HSMAR1 DNA Mariner 0 1287 1 5154 185 47 24 chr15 28175922 28176614 -57519140 - L1MC1 LINE L1 -443 5890 5216 230 0 0 32 chr15 28176624 28176655 -57519099 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2116 125 0 3 chr15 28176655 28176940 -57518814 - AluSx SINE Alu -26 286 1 5154 185 47 24 chr15 28176940 28177344 -57518410 - L1MC1 LINE L1 -1117 5216 4823 2418 77 7 0 chr15 28177344 28177642 -57518112 - AluSx SINE Alu -12 300 1 5154 185 47 24 chr15 28177642 28177970 -57517784 - L1MC1 LINE L1 -1510 4823 4415 1732 175 8 38 chr15 28177975 28178340 -57517414 - MLT1A1 LTR MaLR -11 354 1 2072 216 30 17 chr15 28178340 28178808 -57516946 - MLT1A1-int LTR MaLR 0 1735 1262 234 132 0 0 chr15 28179098 28179136 -57516618 - MLT1A1-int LTR MaLR -515 856 819 2333 73 3 16 chr15 28179140 28179455 -57516299 - AluY SINE Alu 0 311 1 1231 212 7 33 chr15 28179464 28179770 -57515984 - MLT1A1-int LTR MaLR -639 732 435 2012 115 10 23 chr15 28179770 28180074 -57515680 + AluSq SINE Alu 1 300 -13 250 62 62 21 chr15 28180099 28180147 -57515607 + CT-rich Low_complexity Low_complexity 5 54 0 2172 129 0 0 chr15 28180158 28180460 -57515294 - AluSx SINE Alu 0 312 11 527 221 0 0 chr15 28180473 28180577 -57515177 - MLT1A1-int LTR MaLR -1312 423 320 4104 177 15 47 chr15 28180578 28181047 -57514707 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 28181047 28181337 -57514417 + AluSx SINE Alu 1 299 -13 4104 177 15 47 chr15 28181337 28181882 -57513872 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 28181882 28182120 -57513634 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 28182127 28182223 -57513531 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 28182223 28182489 -57513265 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 28182489 28183096 -57512658 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 28183096 28183399 -57512355 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 28183399 28184503 -57511251 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 28184506 28184838 -57510916 - MLT1A1-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 28184853 28185239 -57510515 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 28185243 28185492 -57510262 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 28185519 28186744 -57509010 - L1M4 LINE L1 -1743 4403 3144 1583 195 122 3 chr15 28186900 28187284 -57508470 + MER63B DNA MER1_type 1 430 -6 425 266 98 80 chr15 28187285 28187461 -57508293 - L1MEd LINE L1 -1168 1322 1151 1776 141 36 36 chr15 28187461 28187766 -57507988 - AluJb SINE Alu -7 305 1 425 266 98 80 chr15 28187766 28187800 -57507954 - L1MEd LINE L1 -1339 1151 1119 2133 122 3 0 chr15 28187800 28188094 -57507660 + AluSq SINE Alu 1 295 -18 425 266 98 80 chr15 28188094 28188209 -57507545 - L1MEd LINE L1 -1371 1119 993 1051 296 94 19 chr15 28188241 28188711 -57507043 - LTR33 LTR ERVL -8 513 9 22 80 0 0 chr15 28189312 28189362 -57506392 + AT_rich Low_complexity Low_complexity 1 50 0 2404 77 0 3 chr15 28189448 28189746 -57506008 - AluY SINE Alu -13 298 2 1663 156 25 7 chr15 28189754 28190029 -57505725 + AluJb SINE Alu 18 297 -15 404 272 64 46 chr15 28190067 28190350 -57505404 + L1ME LINE L1 5532 5819 -302 2240 99 17 0 chr15 28190359 28190661 -57505093 + AluY SINE Alu 1 307 -4 2229 108 10 0 chr15 28191111 28191407 -57504347 - AluSx SINE Alu -13 299 1 221 272 99 12 chr15 28191481 28191562 -57504192 + MIR SINE MIR 26 113 -95 30 83 0 0 chr15 28191732 28191804 -57503950 + AT_rich Low_complexity Low_complexity 1 72 0 1330 120 0 11 chr15 28191847 28192038 -57503716 + AluSx SINE Alu 35 223 -89 356 148 0 0 chr15 28192039 28192093 -57503661 - Alu SINE Alu -247 54 1 229 272 32 51 chr15 28192252 28192410 -57503344 + L1ME LINE L1 5650 5804 -317 2230 105 7 3 chr15 28192421 28192717 -57503037 - AluSq SINE Alu -16 297 1 1014 125 0 0 chr15 28193379 28193515 -57502239 + AluSq/x SINE Alu 2 137 -175 1906 104 97 0 chr15 28193515 28193794 -57501960 + AluY SINE Alu 1 306 -5 2171 98 14 3 chr15 28194573 28194868 -57500886 - AluSp SINE Alu -15 298 1 1611 192 10 19 chr15 28195126 28195438 -57500316 + AluJb SINE Alu 1 309 -3 2328 77 0 39 chr15 28195460 28195771 -57499983 + AluSc SINE Alu 1 299 -10 513 270 104 48 chr15 28195928 28196127 -57499627 + L1M4 LINE L1 2374 2560 -3586 1638 174 24 17 chr15 28196127 28196420 -57499334 + AluJb SINE Alu 1 295 -17 513 270 104 48 chr15 28196420 28196564 -57499190 + L1M4 LINE L1 2560 2694 -3452 1816 152 35 0 chr15 28196564 28196853 -57498901 + AluSq SINE Alu 1 299 -14 513 270 104 48 chr15 28196853 28197155 -57498599 + L1M4 LINE L1 2694 3080 -3066 2097 116 7 10 chr15 28197155 28197458 -57498296 + AluSx SINE Alu 1 302 -10 513 270 104 48 chr15 28197458 28197646 -57498108 + L1M4 LINE L1 3080 3256 -2890 1410 153 0 18 chr15 28197646 28197874 -57497880 + AluJb SINE Alu 50 273 -39 361 167 12 12 chr15 28197880 28197964 -57497790 + GA-rich Low_complexity Low_complexity 3 86 0 2191 109 10 0 chr15 28197964 28198257 -57497497 + AluSp SINE Alu 1 296 -17 962 136 0 0 chr15 28198337 28198492 -57497262 + MER41B LTR ERV1 481 635 0 592 115 23 0 chr15 28198492 28198579 -57497175 + MER41B-int LTR ERV1 1 89 -5857 518 144 0 11 chr15 28198575 28198665 -57497089 + MER41B-int LTR ERV1 2416 2504 -3442 * 1228 105 90 0 chr15 28198658 28198858 -57496896 + MER41B-int LTR ERV1 2631 2848 -3098 1969 119 3 20 chr15 28198866 28199161 -57496593 + AluSx SINE Alu 1 290 -22 11030 98 37 25 chr15 28199187 28199943 -57495811 + MER41B-int LTR ERV1 2393 3138 -2808 2111 134 3 7 chr15 28199943 28200250 -57495504 - AluSq SINE Alu -7 306 1 11030 98 37 25 chr15 28200250 28200602 -57495152 + MER41B-int LTR ERV1 3138 3484 -2462 2010 138 27 3 chr15 28200602 28200899 -57494855 + AluSx SINE Alu 1 304 -8 11030 98 37 25 chr15 28200899 28201691 -57494063 + MER41B-int LTR ERV1 3484 5944 -2 3825 114 13 2 chr15 28201692 28202236 -57493518 + MER41B LTR ERV1 2 551 -84 234 128 0 0 chr15 28202238 28202277 -57493477 + (A)n Simple_repeat Simple_repeat 1 39 0 445 230 0 0 chr15 28202335 28202422 -57493332 + AluJ/FLAM SINE Alu 2 88 -224 2350 119 54 33 chr15 28202437 28202866 -57492888 - L1MA8 LINE L1 -68 6223 5786 4971 127 58 57 chr15 28202868 28202964 -57492790 + Tigger3b DNA MER2_type 3 97 -2931 1580 174 37 37 chr15 28202964 28203258 -57492496 + AluJo SINE Alu 1 294 -18 4971 127 58 57 chr15 28203258 28203499 -57492255 + Tigger3b DNA MER2_type 97 336 -2692 2193 84 17 17 chr15 28203499 28203798 -57491956 - AluY SINE Alu -12 299 1 4971 127 58 57 chr15 28203798 28204070 -57491684 + Tigger3b DNA MER2_type 336 606 -2422 2222 101 37 0 chr15 28204070 28204368 -57491386 + AluSx SINE Alu 1 309 -3 4971 127 58 57 chr15 28204368 28204711 -57491043 + Tigger3b DNA MER2_type 606 958 -273 4644 100 25 21 chr15 28204714 28205431 -57490323 - L1PB1 LINE L1 0 6151 5432 2260 121 0 0 chr15 28205431 28205729 -57490025 - AluSx SINE Alu -12 300 3 1099 112 0 0 chr15 28205731 28205874 -57489880 - AluSq/x SINE Alu -170 143 1 1058 246 53 48 chr15 28205890 28206305 -57489449 - L1M1 LINE L1 -4327 3238 2822 2278 120 0 0 chr15 28206503 28206804 -57488950 + AluSq SINE Alu 1 301 -12 827 258 37 12 chr15 28207298 28207542 -57488212 + MIR SINE MIR 13 262 0 370 235 12 0 chr15 28207796 28207877 -57487877 + L1ME LINE L1 12 93 -5977 839 153 0 0 chr15 28207879 28207997 -57487757 + FLAM_C SINE Alu 1 118 -25 1554 247 48 53 chr15 28208020 28208469 -57487285 + L1ME LINE L1 81 531 -5539 1375 202 39 58 chr15 28208469 28208850 -57486904 - MLT1A2 LTR MaLR 0 374 1 1554 247 48 53 chr15 28208850 28208901 -57486853 + L1ME LINE L1 531 581 -5489 2330 114 0 0 chr15 28208901 28209208 -57486546 + AluSg SINE Alu 1 307 -3 1554 247 48 53 chr15 28209208 28209313 -57486441 + L1ME LINE L1 581 684 -5386 2362 93 3 6 chr15 28209400 28209712 -57486042 + AluY SINE Alu 1 311 0 258 156 0 0 chr15 28209962 28210007 -57485747 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 1371 209 6 62 chr15 28210190 28210327 -57485427 + AluJb SINE Alu 1 144 -168 2374 77 0 3 chr15 28210327 28210614 -57485140 - AluSc SINE Alu -23 286 1 1371 209 6 62 chr15 28210614 28210796 -57484958 + AluJb SINE Alu 144 302 -10 463 31 31 0 chr15 28210917 28210982 -57484772 + (TA)n Simple_repeat Simple_repeat 1 67 0 1861 182 0 0 chr15 28210982 28211278 -57484476 - AluSx SINE Alu -16 296 1 2279 113 7 0 chr15 28211397 28211707 -57484047 + AluSx SINE Alu 1 312 0 1417 170 3 95 chr15 28211715 28212032 -57483722 + AluSx SINE Alu 14 301 -11 273 239 161 31 chr15 28212284 28212414 -57483340 + MIR SINE MIR 61 207 -55 2381 89 0 0 chr15 28212415 28212707 -57483047 + AluSg SINE Alu 2 293 -17 261 0 0 0 chr15 28212708 28212737 -57483017 + (CA)n Simple_repeat Simple_repeat 2 30 0 2141 91 31 0 chr15 28213349 28213635 -57482119 + AluSq SINE Alu 7 301 -12 1827 86 9 0 chr15 28213804 28214036 -57481718 + AluSq SINE Alu 66 299 -14 1852 127 49 18 chr15 28214343 28214627 -57481127 - AluJb SINE Alu -15 297 5 1963 103 53 13 chr15 28214896 28215197 -57480557 + AluSq SINE Alu 1 313 0 1556 117 74 27 chr15 28215321 28215578 -57480176 - AluSq SINE Alu -20 293 25 1063 102 0 0 chr15 28215600 28215737 -57480017 - AluSg/x SINE Alu -16 294 158 1473 194 110 59 chr15 28215749 28215803 -57479951 + L1MC5 LINE L1 7320 7370 -591 2028 131 7 0 chr15 28215803 28216109 -57479645 + AluSx SINE Alu 1 308 -4 1473 194 110 59 chr15 28216109 28216616 -57479138 + L1MC5 LINE L1 7370 7910 -51 2124 94 24 3 chr15 28216624 28216922 -57478832 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr15 28218252 28218288 -57477466 + GC_rich Low_complexity Low_complexity 1 36 0 494 191 106 14 chr15 28219057 28219083 -57476671 - L1MA10 LINE L1 -1 6333 6308 581 268 61 32 chr15 28219083 28219363 -57476391 - L1ME1 LINE L1 -16 6150 5863 2494 81 0 0 chr15 28219880 28220189 -57475565 + AluSq SINE Alu 5 313 0 1767 185 17 0 chr15 28220343 28220645 -57475109 + 7SLRNA srpRNA srpRNA 1 307 -13 2350 66 0 0 chr15 28220647 28220936 -57474818 + AluY SINE Alu 17 305 -6 1150 183 9 14 chr15 28221233 28221452 -57474302 + AluJb SINE Alu 86 303 -9 2319 109 6 3 chr15 28222090 28222402 -57473352 + AluSq SINE Alu 1 313 0 292 262 107 0 chr15 28222459 28222543 -57473211 - Charlie2 DNA MER1_type -2689 93 1 2006 146 0 10 chr15 28222666 28222968 -57472786 + AluJb SINE Alu 1 299 -13 561 209 87 0 chr15 28222978 28223093 -57472661 + FLAM_A SINE Alu 1 125 -8 2853 206 58 16 chr15 28223104 28223894 -57471860 + L1M4 LINE L1 4345 5167 -979 2452 57 0 0 chr15 28223894 28224195 -57471559 + AluY SINE Alu 1 301 0 1884 127 30 23 chr15 28224206 28224334 -57471420 + AluSq SINE Alu 1 127 -186 2322 108 0 0 chr15 28224334 28224630 -57471124 + AluSg SINE Alu 1 296 -14 2379 76 0 0 chr15 28224630 28224948 -57470806 + AluSg SINE Alu 1 318 0 1884 127 30 23 chr15 28224948 28225115 -57470639 + AluSq SINE Alu 126 301 -12 1749 193 0 0 chr15 28225131 28225426 -57470328 + AluSx SINE Alu 1 295 -17 1208 128 10 15 chr15 28225443 28225639 -57470115 + AluSg/x SINE Alu 116 310 0 586 213 0 29 chr15 28225643 28225779 -57469975 + L1M4 LINE L1 5163 5294 -852 1822 119 8 0 chr15 28225779 28226032 -57469722 + AluSq SINE Alu 42 296 -17 2244 114 7 0 chr15 28226114 28226413 -57469341 - AluSx SINE Alu -11 301 1 771 187 0 8 chr15 28226441 28226575 -57469179 + AluJo SINE Alu 1 133 -169 557 273 204 14 chr15 28226652 28226868 -57468886 - MIR SINE MIR -3 259 3 2492 41 3 3 chr15 28226990 28227283 -57468471 - AluY SINE Alu -18 293 1 1511 181 25 7 chr15 28227460 28227736 -57468018 + AluJb SINE Alu 6 286 -26 25 31 0 0 chr15 28227736 28227768 -57467986 + AT_rich Low_complexity Low_complexity 1 32 0 772 175 11 73 chr15 28227781 28227958 -57467796 + AluJo SINE Alu 137 302 0 299 250 0 34 chr15 28228271 28228359 -57467395 + L2 LINE L2 3227 3311 -2 21 0 0 0 chr15 28228428 28228449 -57467305 + AT_rich Low_complexity Low_complexity 1 21 0 2334 75 3 14 chr15 28228454 28228749 -57467005 - AluSc SINE Alu -16 293 2 26 0 0 0 chr15 28229303 28229329 -57466425 + AT_rich Low_complexity Low_complexity 1 26 0 1596 97 5 5 chr15 28229598 28229814 -57465940 - AluSq SINE Alu -97 216 1 593 125 188 18 chr15 28229819 28229931 -57465823 - FLAM_C SINE Alu -2 141 11 2208 89 10 0 chr15 28229952 28230245 -57465509 - AluSp SINE Alu -15 298 3 214 329 119 19 chr15 28230347 28230557 -57465197 - L2 LINE L2 -527 2787 2557 972 156 81 6 chr15 28231261 28231434 -57464320 + AluSg1 SINE Alu 1 186 -123 638 214 19 31 chr15 28231434 28231593 -57464161 + AluSq SINE Alu 53 209 -104 1848 117 19 11 chr15 28232323 28232619 -57463135 + AluSx SINE Alu 23 320 0 1068 150 0 0 chr15 28232619 28232786 -57462968 + AluSq SINE Alu 135 301 -12 1749 193 0 0 chr15 28232802 28233097 -57462657 + AluSx SINE Alu 1 295 -17 1208 128 10 15 chr15 28233114 28233310 -57462444 + AluSg/x SINE Alu 118 312 0 695 163 21 146 chr15 28233314 28233450 -57462304 + L1M4 LINE L1 5163 5258 -888 1788 133 7 0 chr15 28233450 28233720 -57462034 + AluSq SINE Alu 42 313 0 695 163 21 146 chr15 28233720 28233823 -57461931 + L1M4 LINE L1 5258 5372 -774 2255 119 0 3 chr15 28233848 28234151 -57461603 - AluSx SINE Alu -10 302 1 535 180 180 0 chr15 28234233 28234344 -57461410 + FLAM_C SINE Alu 2 132 -1 2054 99 7 4 chr15 28234366 28234639 -57461115 + AluSp SINE Alu 23 296 -17 2135 127 7 0 chr15 28234721 28235020 -57460734 - AluSx SINE Alu -11 301 1 754 186 0 8 chr15 28235048 28235177 -57460577 + FLAM_C SINE Alu 1 128 -5 1516 114 82 28 chr15 28235441 28235696 -57460058 - AluSq SINE Alu -20 293 25 2175 108 3 3 chr15 28235718 28236014 -57459740 - AluSx SINE Alu -16 296 1 593 125 188 18 chr15 28236019 28236131 -57459623 - FLAM_C SINE Alu -2 141 11 2208 89 10 0 chr15 28236152 28236445 -57459309 - AluSp SINE Alu -15 298 3 214 329 119 19 chr15 28236547 28236757 -57458997 - L2 LINE L2 -527 2787 2557 702 137 111 0 chr15 28237462 28237579 -57458175 + AluSg1 SINE Alu 2 131 -178 1621 155 13 26 chr15 28237581 28237885 -57457869 + AluSx SINE Alu 1 300 -12 798 132 35 0 chr15 28238076 28238190 -57457564 + FLAM_C SINE Alu 1 118 -15 2333 63 3 72 chr15 28238597 28238915 -57456839 - AluSc SINE Alu -13 296 1 22 70 0 0 chr15 28239052 28239095 -57456659 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 28239568 28239598 -57456156 + AT_rich Low_complexity Low_complexity 1 30 0 726 174 16 0 chr15 28239871 28239992 -57455762 - FAM SINE Alu -19 166 44 318 50 0 0 chr15 28240123 28240163 -57455591 + (TA)n Simple_repeat Simple_repeat 2 41 0 2602 66 0 0 chr15 28240163 28240466 -57455288 - AluSg SINE Alu -7 303 1 1055 60 8 0 chr15 28240500 28240634 -57455120 + L1MA1 LINE L1 6159 6293 -9 2414 89 3 0 chr15 28240867 28241169 -57454585 + AluSp SINE Alu 2 304 -9 2215 114 3 0 chr15 28241867 28242164 -57453590 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 28242294 28242315 -57453439 + AT_rich Low_complexity Low_complexity 1 21 0 313 203 0 0 chr15 28242847 28242911 -57452843 - MIR3 SINE MIR -25 183 120 2926 3 0 0 chr15 28242915 28243223 -57452531 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 28243480 28243524 -57452230 + AT_rich Low_complexity Low_complexity 1 44 0 2449 59 3 0 chr15 28243933 28244222 -57451532 - AluY SINE Alu -21 290 1 2366 75 10 0 chr15 28245231 28245523 -57450231 + AluSg SINE Alu 1 295 -15 2184 103 3 13 chr15 28245557 28245858 -57449896 + AluY SINE Alu 1 298 -13 2246 90 13 19 chr15 28246315 28246627 -57449127 + AluSg SINE Alu 1 310 0 261 114 0 0 chr15 28247069 28247104 -57448650 + tRNA-Met-e tRNA tRNA 1 35 -40 21 0 0 0 chr15 28248352 28248373 -57447381 + AT_rich Low_complexity Low_complexity 1 21 0 1617 129 0 21 chr15 28248425 28248665 -57447089 - AluSx SINE Alu -77 235 1 285 261 68 0 chr15 28249197 28249285 -57446469 - L1ME LINE L1 -412 5709 5616 28 48 0 0 chr15 28249332 28249374 -57446380 + AT_rich Low_complexity Low_complexity 1 42 0 387 181 105 38 chr15 28249444 28249549 -57446205 + L1ME4a LINE L1 5977 6088 -33 2251 134 0 0 chr15 28249555 28249862 -57445892 - AluSx SINE Alu -5 307 1 23 33 0 0 chr15 28249869 28249899 -57445855 + AT_rich Low_complexity Low_complexity 1 30 0 414 314 132 53 chr15 28250190 28250531 -57445223 + L2 LINE L2 2216 2529 -743 1726 162 13 16 chr15 28250531 28250840 -57444914 - AluJb SINE Alu -4 308 1 414 314 132 53 chr15 28250840 28251336 -57444418 + L2 LINE L2 2529 3159 -113 2490 45 0 19 chr15 28251336 28251644 -57444110 - AluY SINE Alu -9 302 1 414 314 132 53 chr15 28251644 28251768 -57443986 + L2 LINE L2 3159 3272 0 2407 65 3 3 chr15 28252620 28252912 -57442842 - AluSq SINE Alu -21 292 1 2365 88 7 3 chr15 28253880 28254186 -57441568 - AluSp SINE Alu -6 307 1 256 275 69 4 chr15 28254216 28254339 -57441415 - MIR SINE MIR -6 202 72 2006 130 14 0 chr15 28254416 28254701 -57441053 - AluSx SINE Alu -23 289 1 1624 186 6 38 chr15 28254786 28254975 -57440779 - AluJo SINE Alu 0 312 135 2305 91 0 10 chr15 28254975 28255273 -57440481 - AluSc SINE Alu -14 295 1 1624 186 6 38 chr15 28255273 28255401 -57440353 - AluJo SINE Alu -177 135 5 315 313 17 26 chr15 28255709 28255824 -57439930 - L1ME4a LINE L1 -222 5899 5786 2215 96 3 3 chr15 28255830 28256122 -57439632 - AluSg SINE Alu -18 292 1 22 35 0 0 chr15 28256133 28256162 -57439592 + AT_rich Low_complexity Low_complexity 1 29 0 3168 129 17 15 chr15 28256163 28256840 -57438914 + L1M2 LINE L1 5130 5809 -482 2115 138 7 0 chr15 28256845 28257143 -57438611 - AluSx SINE Alu -12 300 1 747 188 83 0 chr15 28257154 28257287 -57438467 - FRAM SINE Alu -14 162 19 2354 83 3 13 chr15 28257663 28257977 -57437777 + AluY SINE Alu 1 311 0 317 0 70 0 chr15 28258698 28258741 -57437013 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 28258794 28259098 -57436656 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 28261701 28262013 -57433741 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 28262018 28262185 -57433569 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 28262185 28262481 -57433273 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 28262481 28262620 -57433134 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 28262789 28263014 -57432740 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 28263222 28263376 -57432378 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 28263884 28264007 -57431747 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 28264483 28264525 -57431229 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 28264632 28264933 -57430821 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 28265013 28265331 -57430423 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 28265339 28265463 -57430291 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 28265480 28265699 -57430055 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 28265724 28265919 -57429835 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 28266163 28266332 -57429422 - AluSg/x SINE Alu -18 294 128 560 199 15 0 chr15 28266740 28266871 -57428883 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 28266868 28268198 -57427556 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 28268272 28268573 -57427181 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 28268574 28268743 -57427011 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 28268747 28268770 -57426984 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 28268770 28268853 -57426901 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 28268869 28268936 -57426818 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 28268938 28269229 -57426525 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 28269734 28269897 -57425857 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 28270276 28270580 -57425174 - AluSx SINE Alu -12 300 1 2108 137 0 0 chr15 28270829 28271121 -57424633 - AluSx SINE Alu -20 292 1 2068 87 11 4 chr15 28271298 28271573 -57424181 + AluSx SINE Alu 22 298 -14 316 330 28 17 chr15 28271597 28271625 -57424129 - L1MEc LINE L1 -4343 2053 2027 1603 172 72 24 chr15 28271625 28271957 -57423797 - MER7A DNA MER2_type 0 346 1 316 330 28 17 chr15 28271957 28272104 -57423650 - L1MEc LINE L1 -4369 2027 1876 876 136 0 0 chr15 28272129 28272247 -57423507 + FLAM_C SINE Alu 6 123 -20 1806 141 4 0 chr15 28272494 28272763 -57422991 - AluSx SINE Alu -42 270 1 252 174 22 0 chr15 28272800 28272846 -57422908 - MER5A DNA MER1_type -121 68 22 333 172 0 0 chr15 28273060 28273118 -57422636 - AluS SINE Alu -244 59 2 370 211 59 0 chr15 28273135 28273234 -57422520 - L1M4 LINE L1 -3288 2858 2755 277 263 8 8 chr15 28273234 28273352 -57422402 + AluSc SINE Alu 1 118 -181 2133 106 6 44 chr15 28273729 28274089 -57421665 + L1MA7 LINE L1 5945 6290 -1 673 117 0 0 chr15 28274235 28274329 -57421425 + AluSg/x SINE Alu 196 289 -21 811 188 77 22 chr15 28274369 28274649 -57421105 - L1M LINE L1 -737 5429 5140 2306 114 3 0 chr15 28274670 28274976 -57420778 - AluSg SINE Alu -3 307 1 1554 147 41 75 chr15 28274987 28275148 -57420606 - AluJo SINE Alu -14 298 133 2195 101 7 0 chr15 28275148 28275446 -57420308 - AluSg SINE Alu -10 300 1 2292 96 0 3 chr15 28275453 28275754 -57420000 - AluSg SINE Alu -10 300 1 1554 147 41 75 chr15 28275754 28275877 -57419877 - AluJo SINE Alu -185 127 16 209 238 0 0 chr15 28275978 28276020 -57419734 + A-rich Low_complexity Low_complexity 1 42 0 260 267 40 0 chr15 28276041 28276191 -57419563 + (TA)n Simple_repeat Simple_repeat 2 157 0 1420 152 70 0 chr15 28276350 28276607 -57419147 - AluSx SINE Alu -19 293 19 1283 221 68 46 chr15 28276618 28277161 -57418593 + L1M4 LINE L1 2174 2728 -3418 421 109 0 0 chr15 28277731 28277795 -57417959 + AluSc SINE Alu 237 300 -9 2544 221 75 82 chr15 28277795 28278260 -57417494 + L1M4 LINE L1 3041 3508 -2638 1221 53 0 0 chr15 28278260 28278412 -57417342 - L1PA4 LINE L1 -4 6151 6000 2544 221 75 82 chr15 28278412 28278886 -57416868 + L1M4 LINE L1 3508 3984 -2162 2247 56 42 10 chr15 28278886 28279174 -57416580 + AluY SINE Alu 1 297 -14 240 27 0 0 chr15 28279174 28279211 -57416543 + Alu SINE Alu 264 300 0 2544 221 75 82 chr15 28279211 28279591 -57416163 + L1M4 LINE L1 3982 4389 -1757 214 226 32 48 chr15 28279676 28279738 -57416016 - MIR SINE MIR -200 62 2 2008 116 0 27 chr15 28279772 28280093 -57415661 + AluJb SINE Alu 1 313 0 212 218 0 149 chr15 28280099 28280122 -57415632 + MER5B DNA MER1_type 103 128 -50 723 155 110 58 chr15 28280122 28280277 -57415477 - FRAM SINE Alu -2 164 2 212 218 0 149 chr15 28280277 28280340 -57415414 + MER5B DNA MER1_type 128 176 -2 394 299 59 107 chr15 28280423 28280777 -57414977 + L2 LINE L2 2935 3271 -1 22 0 0 0 chr15 28281260 28281282 -57414472 + AT_rich Low_complexity Low_complexity 1 22 0 2110 106 6 37 chr15 28281640 28281962 -57413792 + AluSq SINE Alu 1 312 -1 276 290 144 9 chr15 28282226 28282466 -57413288 + L1ME LINE L1 5390 5662 -459 3000 157 54 2 chr15 28282875 28283104 -57412650 + Tigger1 DNA MER2_type 1836 2052 -366 1490 163 45 38 chr15 28283104 28283393 -57412361 + AluJo SINE Alu 12 302 -10 3000 157 54 2 chr15 28283393 28283717 -57412037 + Tigger1 DNA MER2_type 2052 2418 0 519 234 167 57 chr15 28284243 28284698 -57411056 + MLT1H LTR MaLR 79 583 -12 2150 101 7 0 chr15 28284858 28285135 -57410619 + AluSg SINE Alu 1 279 -31 1360 204 11 21 chr15 28287903 28288187 -57407567 + AluJo SINE Alu 1 281 -31 2016 112 3 24 chr15 28288347 28288634 -57407120 + AluSg SINE Alu 1 281 -29 1334 283 64 20 chr15 28288700 28289294 -57406460 + L1ME3A LINE L1 5551 6170 0 34 42 0 0 chr15 28289802 28289850 -57405904 + AT_rich Low_complexity Low_complexity 1 48 0 237 119 0 0 chr15 28289911 28289953 -57405801 + (TA)n Simple_repeat Simple_repeat 2 43 0 208 290 210 19 chr15 28290304 28290466 -57405288 + MIR3 SINE MIR 3 195 -13 1617 145 84 30 chr15 28290857 28291153 -57404601 - AluJo SINE Alu 0 312 1 26 50 0 0 chr15 28291752 28291792 -57403962 + AT_rich Low_complexity Low_complexity 1 40 0 2257 87 7 0 chr15 28292296 28292585 -57403169 + AluSx SINE Alu 1 291 -21 377 159 0 16 chr15 28292647 28292710 -57403044 + AluS SINE Alu 1 62 -241 1521 108 5 0 chr15 28292710 28292914 -57402840 + AluSg/x SINE Alu 107 311 -1 439 153 12 0 chr15 28293335 28293420 -57402334 - L1MB8 LINE L1 0 6178 6093 707 150 65 40 chr15 28293429 28293629 -57402125 - L1MB4 LINE L1 -1 6179 5975 270 164 16 16 chr15 28293633 28293694 -57402060 - L1MB4 LINE L1 -977 5356 5296 2118 124 10 10 chr15 28293712 28294018 -57401736 - AluSc SINE Alu -3 306 1 180 0 0 0 chr15 28294052 28294072 -57401682 + (TTCCC)n Simple_repeat Simple_repeat 4 23 0 21 0 0 0 chr15 28294293 28294314 -57401440 + AT_rich Low_complexity Low_complexity 1 21 0 1955 116 4 0 chr15 28294323 28294599 -57401155 - AluSg SINE Alu -17 293 17 1963 147 0 26 chr15 28295196 28295503 -57400251 + AluSx SINE Alu 1 299 -13 233 319 14 49 chr15 28296124 28296268 -57399486 + MLT1L LTR MaLR 140 278 -337 226 252 47 63 chr15 28296386 28296513 -57399241 + MLT1L LTR MaLR 483 607 -8 796 240 103 33 chr15 28297126 28297426 -57398328 + Charlie2 DNA MER1_type 9 329 -2453 * 893 207 42 78 chr15 28297418 28297722 -57398032 + Charlie2 DNA MER1_type 1856 2142 -720 2295 104 0 0 chr15 28297722 28298020 -57397734 + AluSx SINE Alu 1 298 -14 893 207 42 78 chr15 28298020 28298141 -57397613 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 28298860 28298881 -57396873 + AT_rich Low_complexity Low_complexity 1 21 0 2214 89 0 0 chr15 28298931 28299236 -57396518 + AluSg SINE Alu 3 307 0 616 63 0 0 chr15 28299332 28299411 -57396343 + MADE1 DNA Mariner 1 79 -1 4257 44 22 13 chr15 28299565 28300108 -57395646 + L1PA5 LINE L1 5607 6154 0 21 0 0 0 chr15 28300198 28300219 -57395535 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 28300690 28300815 -57394939 - L2 LINE L2 -21 3251 3123 527 130 57 16 chr15 28300935 28301058 -57394696 - L1PA6 LINE L1 -59 6095 5968 23 78 0 0 chr15 28501173 28501224 -57194530 + AT_rich Low_complexity Low_complexity 1 51 0 1260 233 66 44 chr15 28501243 28501608 -57194146 - MLT1A2 LTR MaLR -1 373 1 935 62 0 0 chr15 28502419 28502531 -57193223 + AluSg1 SINE Alu 1 112 -197 282 224 0 72 chr15 28502868 28502993 -57192761 - AluSc SINE Alu -165 134 19 1402 145 5 10 chr15 28502993 28503200 -57192554 - AluSx SINE Alu -105 207 2 485 267 48 29 chr15 28503258 28503464 -57192290 - L1MC5 LINE L1 -21 7940 7731 279 284 92 35 chr15 28503697 28503838 -57191916 - HAL1 LINE L1 -2358 149 1 883 143 0 0 chr15 28504243 28504369 -57191385 - AluJb SINE Alu -179 133 8 279 211 106 10 chr15 28504381 28504485 -57191269 - L2 LINE L2 -532 2782 2669 248 306 81 48 chr15 28504546 28504670 -57191084 + MIR SINE MIR 3 130 -132 32 0 0 0 chr15 28504956 28504988 -57190766 + AT_rich Low_complexity Low_complexity 1 32 0 1611 248 70 24 chr15 28505190 28505778 -57189976 - L1M4c LINE L1 -4786 1598 984 2317 112 0 0 chr15 28505788 28506091 -57189663 - AluSg SINE Alu -7 303 1 2051 116 0 13 chr15 28506105 28506408 -57189346 - AluSg SINE Alu -3 307 9 1360 181 133 24 chr15 28506526 28506554 -57189200 + L1MB5 LINE L1 5662 5686 -488 1557 160 0 8 chr15 28506554 28506804 -57188950 - AluSx SINE Alu -14 298 51 1360 181 133 24 chr15 28506804 28507151 -57188603 + L1MB5 LINE L1 5686 6078 -96 243 104 62 21 chr15 28507122 28507170 -57188584 + L1M4c LINE L1 2435 2484 -3900 * 695 150 8 33 chr15 28507248 28507368 -57188386 + FLAM_A SINE Alu 18 134 -8 28 48 0 0 chr15 28508169 28508211 -57187543 + AT_rich Low_complexity Low_complexity 1 42 0 743 203 0 0 chr15 28508211 28508329 -57187425 - FLAM_C SINE Alu -23 120 3 2213 71 10 20 chr15 28508444 28508738 -57187016 + AluY SINE Alu 1 291 -20 2418 82 0 3 chr15 28509173 28509478 -57186276 + AluY SINE Alu 1 304 -7 648 242 30 6 chr15 28509688 28509853 -57185901 + HAL1 LINE L1 1398 1566 -941 1783 110 4 4 chr15 28509853 28510098 -57185656 + AluSg SINE Alu 1 245 -65 33 43 0 0 chr15 28510120 28510167 -57185587 + AT_rich Low_complexity Low_complexity 1 47 0 692 103 9 9 chr15 28510350 28510457 -57185297 - AluSp SINE Alu -202 111 5 204 114 0 29 chr15 28511140 28511175 -57184579 + (TG)n Simple_repeat Simple_repeat 2 35 0 2521 61 7 3 chr15 28512166 28512476 -57183278 - AluY SINE Alu 0 311 1 193 339 101 0 chr15 28513198 28513307 -57182447 - MIR SINE MIR -85 177 58 2355 113 0 0 chr15 28513999 28514309 -57181445 + AluSx SINE Alu 1 310 -2 844 156 0 21 chr15 28514331 28514472 -57181282 + FLAM_C SINE Alu 2 139 -4 28 0 0 0 chr15 28514476 28514504 -57181250 + AT_rich Low_complexity Low_complexity 1 28 0 214 511 0 0 chr15 28514504 28514594 -57181160 + A-rich Low_complexity Low_complexity 1 90 0 1657 153 20 31 chr15 28514951 28515245 -57180509 - AluJo SINE Alu -21 291 1 209 259 19 0 chr15 28515617 28515671 -57180083 + MIR SINE MIR 81 135 -127 2260 96 0 7 chr15 28515861 28516154 -57179600 + AluSx SINE Alu 1 291 -21 1599 198 7 10 chr15 28516296 28516589 -57179165 + AluJo SINE Alu 1 292 -20 788 250 13 22 chr15 28516872 28517096 -57178658 + AluJo SINE Alu 87 308 -4 483 189 7 88 chr15 28517516 28517664 -57178090 + MER96B DNA MER1_type? 1 136 -281 209 329 51 15 chr15 28518192 28518329 -57177425 + L2 LINE L2 2910 3051 -221 2044 110 7 4 chr15 28519216 28519497 -57176257 - AluSx SINE Alu -30 282 1 342 200 12 59 chr15 28519571 28519656 -57176098 + MLT1F LTR MaLR 216 296 -294 1795 184 3 7 chr15 28519721 28520031 -57175723 - AluJo SINE Alu -3 309 1 423 240 90 22 chr15 28520031 28520195 -57175559 + MLT1F LTR MaLR 375 547 -2 2056 136 0 3 chr15 28520332 28520626 -57175128 - AluSx SINE Alu -17 295 3 653 214 143 9 chr15 28520626 28520836 -57174918 - MER46C DNA MER2_type -66 272 35 290 128 0 0 chr15 28520899 28520946 -57174808 - MER46C DNA MER2_type -288 50 4 226 281 0 24 chr15 28520950 28521032 -57174722 - MIR SINE MIR -65 197 118 1728 168 48 0 chr15 28521033 28521324 -57174430 + AluJb SINE Alu 1 305 -7 577 132 33 26 chr15 28521324 28521476 -57174278 + GA-rich Low_complexity Low_complexity 1 153 0 1900 178 0 3 chr15 28521706 28522010 -57173744 + AluJb SINE Alu 1 303 -9 2241 116 7 0 chr15 28522208 28522511 -57173243 + AluSq SINE Alu 1 305 -8 332 160 144 64 chr15 28522516 28522641 -57173113 + L1ME4a LINE L1 5986 6120 -1 447 292 30 39 chr15 28523022 28523255 -57172499 - L1ME4a LINE L1 -2 6119 5889 1980 108 251 0 chr15 28523255 28523597 -57172157 + MSTA LTR MaLR 1 428 0 2519 74 0 0 chr15 28523609 28523920 -57171834 - AluY SINE Alu 0 311 1 2248 123 7 0 chr15 28523923 28524224 -57171530 - AluSx SINE Alu -9 303 1 1477 170 19 23 chr15 28524237 28524502 -57171252 - AluJo SINE Alu -13 299 36 915 250 20 0 chr15 28524748 28524948 -57170806 - MER63A DNA MER1_type -6 204 1 2305 54 3 73 chr15 28524994 28525307 -57170447 + AluY SINE Alu 1 291 -20 481 282 57 30 chr15 28525329 28525591 -57170163 - L1ME4a LINE L1 -216 5905 5637 529 149 0 23 chr15 28525596 28525683 -57170071 - FRAM SINE Alu -17 159 75 251 305 37 0 chr15 28525683 28525765 -57169989 - L1ME4a LINE L1 -481 5640 5556 26 30 0 0 chr15 28525766 28525799 -57169955 + AT_rich Low_complexity Low_complexity 1 33 0 1648 157 15 4 chr15 28525799 28526061 -57169693 - AluJo SINE Alu -39 273 9 595 102 0 68 chr15 28526079 28526197 -57169557 - AluSp/q SINE Alu 0 313 204 2206 125 0 0 chr15 28526351 28526647 -57169107 - AluSx SINE Alu -16 296 1 2227 107 0 3 chr15 28527211 28527502 -57168252 - AluSx SINE Alu -20 292 3 210 156 0 0 chr15 28527654 28527699 -57168055 + A-rich Low_complexity Low_complexity 1 45 0 38 22 0 0 chr15 28527897 28527942 -57167812 + AT_rich Low_complexity Low_complexity 1 45 0 1935 209 97 33 chr15 28528481 28528968 -57166786 + MLT1F LTR MaLR 1 518 -24 2193 147 0 0 chr15 28528977 28529289 -57166465 - AluSx SINE Alu 0 312 1 28 48 0 0 chr15 28529633 28529675 -57166079 + AT_rich Low_complexity Low_complexity 1 42 0 22 89 0 0 chr15 28529725 28529770 -57165984 + AT_rich Low_complexity Low_complexity 1 45 0 1679 125 110 7 chr15 28529904 28530176 -57165578 + AluSx SINE Alu 1 300 -12 2299 115 0 0 chr15 28530562 28530874 -57164880 - AluSx SINE Alu 0 312 1 318 216 0 68 chr15 28531115 28531203 -57164551 + L1MC4 LINE L1 6443 6524 -1518 2176 306 79 18 chr15 28531203 28531439 -57164315 - ERVL LTR ERVL -2154 3610 3390 2484 69 0 10 chr15 28531439 28531744 -57164010 + AluY SINE Alu 1 302 -9 2176 306 79 18 chr15 28531744 28532405 -57163349 - ERVL LTR ERVL -2374 3390 2658 422 185 11 11 chr15 28532551 28532643 -57163111 - AluS SINE Alu -219 93 2 296 42 83 0 chr15 28532788 28532836 -57162918 + AluY SINE Alu 251 302 0 1673 251 53 69 chr15 28532836 28532939 -57162815 - ERVL LTR ERVL -3263 2501 2398 2093 134 0 7 chr15 28532939 28533237 -57162517 + AluSx SINE Alu 1 296 -16 1673 251 53 69 chr15 28533237 28533258 -57162496 - ERVL LTR ERVL -3366 2398 2378 186 118 0 0 chr15 28533258 28533292 -57162462 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1673 251 53 69 chr15 28533292 28533748 -57162006 - ERVL LTR ERVL -3386 2378 1929 1023 225 152 23 chr15 28533890 28534519 -57161235 - LTR50 LTR ERVL -6 789 1 297 263 40 0 chr15 28534875 28534951 -57160803 + MLT1C LTR MaLR 1 79 -488 2213 99 10 3 chr15 28534953 28535246 -57160508 - AluSx SINE Alu -17 295 1 364 93 19 130 chr15 28535248 28535356 -57160398 - MER96B DNA MER1_type? -238 179 84 980 220 83 42 chr15 28535408 28535745 -57160009 + MLT1C LTR MaLR 50 400 -67 1233 86 0 3 chr15 28535879 28536101 -57159653 - AluSc SINE Alu -15 294 2 2289 108 0 19 chr15 28537009 28537325 -57158429 + AluSx SINE Alu 1 310 -2 2440 79 0 3 chr15 28538080 28538385 -57157369 + AluSg SINE Alu 1 304 -6 2331 92 0 7 chr15 28538385 28538680 -57157074 + AluSg SINE Alu 1 293 -17 32 91 0 0 chr15 28538883 28538971 -57156783 + AT_rich Low_complexity Low_complexity 1 88 0 2150 95 7 30 chr15 28538991 28539286 -57156468 - AluSp SINE Alu -25 288 1 1675 168 56 7 chr15 28539345 28539631 -57156123 - AluJo SINE Alu -12 300 1 1803 157 0 30 chr15 28540210 28540510 -57155244 - AluJo SINE Alu -17 295 5 26 0 0 0 chr15 28541142 28541168 -57154586 + AT_rich Low_complexity Low_complexity 1 26 0 491 292 5 32 chr15 28541378 28541563 -57154191 - MIR SINE MIR -25 237 58 508 326 60 5 chr15 28541693 28541911 -57153843 + MIR SINE MIR 31 260 -2 2596 67 0 0 chr15 28542207 28542506 -57153248 + AluSx SINE Alu 1 299 -13 385 62 73 17 chr15 28545071 28545152 -57150602 + MADE1 DNA Mariner 3 46 -34 333 267 83 8 chr15 28545152 28545272 -57150482 - MIR SINE MIR -123 139 11 2000 151 3 0 chr15 28546130 28546434 -57149320 + AluSg SINE Alu 1 305 -5 2478 62 0 7 chr15 28547164 28547468 -57148286 - AluY SINE Alu -9 302 1 202 167 0 69 chr15 28547490 28547562 -57148192 + (CACCC)n Simple_repeat Simple_repeat 2 68 0 609 158 137 14 chr15 28547779 28547918 -57147836 - L1MB5 LINE L1 -329 5845 5690 1525 130 49 12 chr15 28547923 28548169 -57147585 + AluSx SINE Alu 51 305 -7 500 156 10 0 chr15 28548183 28548279 -57147475 - L1MB5 LINE L1 -847 5299 5203 2420 98 0 0 chr15 28548279 28548584 -57147170 - AluSg SINE Alu -5 305 1 1830 133 54 0 chr15 28548593 28548872 -57146882 - AluSx SINE Alu -18 294 1 314 148 0 0 chr15 28548878 28548932 -57146822 + LTR37B LTR ERV1 237 290 -178 2124 121 3 3 chr15 28548935 28549232 -57146522 - AluSx SINE Alu -15 297 1 280 206 55 0 chr15 28549233 28549306 -57146448 - L1MB5 LINE L1 -951 5195 5119 * 1961 234 44 31 chr15 28549303 28549646 -57146108 - L1M4c LINE L1 -4606 2038 1701 2205 131 0 0 chr15 28549646 28549943 -57145811 - AluSx SINE Alu -15 297 1 1961 234 44 31 chr15 28549943 28550193 -57145561 - L1M4c LINE L1 -4943 1701 1456 2420 103 0 0 chr15 28550193 28550505 -57145249 - AluSx SINE Alu 0 312 1 1961 234 44 31 chr15 28550505 28550607 -57145147 - L1M4c LINE L1 -5188 1456 1 2865 37 6 26 chr15 28552572 28552920 -57142834 - L1PA6 LINE L1 0 6154 5814 2629 37 0 0 chr15 28552914 28553208 -57142546 - AluY SINE Alu -17 294 1 2194 120 13 0 chr15 28553213 28553513 -57142241 - AluSx SINE Alu -8 304 1 2108 118 10 0 chr15 28553848 28554137 -57141617 - AluSx SINE Alu -19 293 2 1392 220 46 21 chr15 28554162 28554564 -57141190 - L1ME1 LINE L1 -51 6115 5763 2023 137 3 13 chr15 28554951 28555251 -57140503 - AluSx SINE Alu -13 299 3 207 302 32 0 chr15 28556238 28556301 -57139453 + MIR3 SINE MIR 137 201 -7 2461 72 3 7 chr15 28557050 28557356 -57138398 + AluSp SINE Alu 1 305 -8 21 57 0 0 chr15 28557406 28557441 -57138313 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 28558108 28558139 -57137615 + AT_rich Low_complexity Low_complexity 1 31 0 853 168 8 0 chr15 28558159 28558290 -57137464 - FLAM_A SINE Alu -1 132 1 255 315 46 0 chr15 28558535 28558643 -57137111 - L1MEd LINE L1 -5737 382 270 249 210 49 12 chr15 28558724 28558805 -57136949 - L1MEd LINE L1 -6000 119 36 2180 122 0 13 chr15 28559133 28559444 -57136310 - AluSx SINE Alu -5 307 1 294 279 73 67 chr15 28560753 28560918 -57134836 + MIR SINE MIR 80 245 -17 1961 125 10 7 chr15 28562426 28562715 -57133039 - AluSx SINE Alu -22 290 1 2363 94 3 0 chr15 28563271 28563580 -57132174 + AluSq SINE Alu 1 310 -3 277 302 44 73 chr15 28564097 28564345 -57131409 - L2 LINE L2 -106 3166 2926 2175 106 0 13 chr15 28564449 28564751 -57131003 - AluSx SINE Alu -14 298 1 1829 164 0 7 chr15 28564756 28565055 -57130699 - AluJo SINE Alu -15 297 1 1825 136 9 67 chr15 28565170 28565500 -57130254 - AluSx SINE Alu -1 311 1 195 214 314 0 chr15 28565550 28565620 -57130134 - L2 LINE L2 0 3272 3181 671 185 138 0 chr15 28565680 28565810 -57129944 + MER2 DNA MER2_type 1 148 -197 994 169 182 9 chr15 28565827 28565901 -57129853 + AluJb SINE Alu 30 90 -222 225 0 0 0 chr15 28565901 28565926 -57129828 + (CAA)n Simple_repeat Simple_repeat 3 27 0 * 261 0 0 0 chr15 28565925 28565954 -57129800 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 994 169 182 9 chr15 28565926 28566104 -57129650 + AluJb SINE Alu 90 293 -19 247 26 184 0 chr15 28566107 28566145 -57129609 + MER2 DNA MER2_type 142 186 -159 2118 96 3 55 chr15 28566145 28566457 -57129297 + AluSx SINE Alu 1 296 -16 271 224 60 0 chr15 28567161 28567228 -57128526 - MIR SINE MIR -89 173 103 2155 107 13 3 chr15 28568404 28568702 -57127052 - AluSx SINE Alu -11 301 1 2251 123 7 0 chr15 28568702 28569010 -57126744 - AluSx SINE Alu -2 310 1 2051 109 0 0 chr15 28569146 28569413 -57126341 - AluSx SINE Alu -5 307 41 2210 107 3 3 chr15 28569525 28569814 -57125940 - AluSx SINE Alu -23 289 1 1409 192 52 4 chr15 28569889 28570160 -57125594 - AluJo SINE Alu -6 306 23 1889 175 0 7 chr15 28570163 28570466 -57125288 - AluJb SINE Alu -11 301 1 22 35 0 0 chr15 28570586 28570615 -57125139 + AT_rich Low_complexity Low_complexity 1 29 0 563 181 32 39 chr15 28570687 28570842 -57124912 - MER46A DNA MER2_type 0 236 83 1907 73 4 0 chr15 28570958 28571191 -57124563 - AluSp SINE Alu -79 234 1 24 0 0 0 chr15 28571197 28571221 -57124533 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr15 28572118 28572140 -57123614 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 266 313 10 10 chr15 28572339 28572438 -57123316 + GA-rich Low_complexity Low_complexity 3 101 0 308 88 18 0 chr15 28572538 28572595 -57123159 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 2186 112 0 3 chr15 28572738 28573044 -57122710 - AluSx SINE Alu 0 305 1 21 0 0 0 chr15 28574703 28574724 -57121030 + AT_rich Low_complexity Low_complexity 1 21 0 801 146 0 51 chr15 28574907 28575044 -57120710 - AluSq/x SINE Alu -181 131 2 731 133 9 0 chr15 28576031 28576136 -57119618 - U6 snRNA snRNA 0 107 2 2448 60 13 10 chr15 28576296 28576598 -57119156 - AluSp SINE Alu -10 303 1 2084 13 0 0 chr15 28577356 28577582 -57118172 - AluYb8 SINE Alu 0 318 93 2103 106 39 0 chr15 28577838 28578121 -57117633 - AluSx SINE Alu -18 294 1 326 228 28 110 chr15 28578912 28579057 -57116697 - L2 LINE L2 0 3313 3181 368 283 107 21 chr15 28579252 28579439 -57116315 + MIR SINE MIR 25 227 -35 2180 93 3 13 chr15 28580255 28580386 -57115368 + AluSc SINE Alu 3 134 -175 2679 42 0 6 chr15 28580386 28580699 -57115055 + AluY SINE Alu 1 311 0 2180 93 3 13 chr15 28580699 28580869 -57114885 + AluSc SINE Alu 134 301 -8 360 0 0 0 chr15 28581724 28581764 -57113990 + (CA)n Simple_repeat Simple_repeat 2 41 0 781 221 51 41 chr15 28581790 28582066 -57113688 + L1MC4a LINE L1 5400 5639 -535 1103 162 0 0 chr15 28582386 28582559 -57113195 + MER2 DNA MER2_type 1 173 -172 285 146 42 0 chr15 28582642 28582690 -57113064 + MER2 DNA MER2_type 267 316 -29 2238 125 0 0 chr15 28582701 28583006 -57112748 - AluJb SINE Alu -7 305 1 321 313 20 0 chr15 28583493 28583592 -57112162 + GA-rich Low_complexity Low_complexity 2 102 0 2672 252 102 45 chr15 28583812 28584608 -57111146 - L2 LINE L2 -14 3299 2411 2467 77 0 0 chr15 28584608 28584907 -57110847 + AluSg SINE Alu 2 300 -10 2672 252 102 45 chr15 28584907 28585335 -57110419 - L2 LINE L2 -902 2411 2009 815 160 45 0 chr15 28585337 28585493 -57110261 + L1 LINE L1 3775 3937 -2209 366 264 114 6 chr15 28585501 28585670 -57110084 + L1MC4a LINE L1 5783 5967 -201 2137 135 3 0 chr15 28586260 28586563 -57109191 - AluSq SINE Alu -9 304 1 21 0 0 0 chr15 28586849 28586870 -57108884 + AT_rich Low_complexity Low_complexity 1 21 0 2311 102 0 10 chr15 28586870 28587173 -57108581 + AluSx SINE Alu 1 300 -12 2170 206 113 8 chr15 28587469 28587975 -57107779 + L1ME1 LINE L1 5604 6162 -4 862 142 0 57 chr15 28587979 28588120 -57107634 - FLAM_A SINE Alu 0 133 1 2401 68 3 0 chr15 28588612 28588905 -57106849 - AluY SINE Alu -17 294 1 2225 126 3 0 chr15 28589066 28589376 -57106378 - AluSx SINE Alu -1 311 1 466 342 161 6 chr15 28590317 28590665 -57105089 + L3 LINE CR1 1126 1527 -50 1172 220 84 85 chr15 28590936 28591594 -57104160 + L1MC5 LINE L1 7272 7928 -33 288 303 90 37 chr15 28591719 28591907 -57103847 + MIR SINE MIR 50 247 -15 1943 131 3 26 chr15 28591912 28592218 -57103536 + AluSx SINE Alu 1 299 -13 256 238 41 115 chr15 28592223 28592492 -57103262 + L1ME4a LINE L1 5862 6110 -11 1621 173 32 0 chr15 28592514 28592797 -57102957 - AluJo SINE Alu -20 292 1 2326 106 0 7 chr15 28595149 28595451 -57100303 - AluSx SINE Alu -12 300 1 225 0 0 0 chr15 28595648 28595673 -57100081 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 10218 66 11 37 chr15 28595680 28597102 -57098652 + SVA Other Other 2 1386 0 345 207 115 11 chr15 28597382 28597469 -57098285 - MER5A DNA MER1_type -85 104 9 806 251 116 43 chr15 28597472 28597736 -57098018 - MLT1L LTR MaLR -46 569 275 805 42 42 0 chr15 28597736 28597832 -57097922 - HY3 scRNA scRNA -1 100 1 806 251 116 43 chr15 28597832 28597894 -57097860 - MLT1L LTR MaLR -340 275 219 191 320 216 24 chr15 28598136 28598261 -57097493 - MIR3 SINE MIR -26 182 34 713 251 11 17 chr15 28598579 28598758 -57096996 - MER5B DNA MER1_type 0 178 1 588 185 67 0 chr15 28598798 28598933 -57096821 + L1MA8 LINE L1 6147 6290 -1 659 190 161 11 chr15 28599514 28599688 -57096066 + L1MB7 LINE L1 4566 4765 -1381 2368 97 0 0 chr15 28599803 28600113 -57095641 + AluSx SINE Alu 1 310 -2 4429 174 40 31 chr15 28600114 28600172 -57095582 + L1MB7 LINE L1 5007 5063 -1121 2128 91 0 7 chr15 28600172 28600446 -57095308 + AluSp SINE Alu 39 310 -3 4429 174 40 31 chr15 28600446 28600759 -57094995 + L1MB7 LINE L1 5063 5372 -812 741 239 0 0 chr15 28600759 28600889 -57094865 + FLAM_A SINE Alu 1 130 -3 4429 174 40 31 chr15 28600889 28601680 -57094074 + L1MB7 LINE L1 5372 6174 -10 297 0 0 0 chr15 28602103 28602136 -57093618 + (TG)n Simple_repeat Simple_repeat 1 33 0 226 203 0 72 chr15 28602255 28602324 -57093430 + MER5B DNA MER1_type 114 177 -1 417 137 27 0 chr15 28603507 28603580 -57092174 + L1MEc LINE L1 50 124 -6272 279 0 0 0 chr15 28603587 28603618 -57092136 + (CA)n Simple_repeat Simple_repeat 2 32 0 756 194 8 8 chr15 28603618 28603744 -57092010 - AluJo SINE Alu -182 130 2 3409 211 30 34 chr15 28603746 28604298 -57091456 + L1MEc LINE L1 120 669 -5727 2340 84 7 7 chr15 28604298 28604597 -57091157 - AluSq SINE Alu -14 299 1 3409 211 30 34 chr15 28604597 28604898 -57090856 + L1MEc LINE L1 669 970 -5426 1562 181 45 7 chr15 28604915 28605202 -57090552 - AluJo SINE Alu -12 300 3 2500 64 0 0 chr15 28605235 28605531 -57090223 + AluY SINE Alu 1 296 -15 1432 181 40 22 chr15 28605533 28605809 -57089945 + AluJo SINE Alu 2 282 -30 228 35 0 0 chr15 28605814 28605843 -57089911 + (CAA)n Simple_repeat Simple_repeat 2 30 0 624 224 68 5 chr15 28605858 28606050 -57089704 + L1MEc LINE L1 2351 2554 -3661 2390 85 0 10 chr15 28606078 28606384 -57089370 + AluY SINE Alu 1 303 -8 779 273 61 34 chr15 28607279 28607572 -57088182 + Charlie2b DNA MER1_type 572 872 -1910 * 1061 209 193 54 chr15 28607567 28608069 -57087685 + Charlie2b DNA MER1_type 1291 1862 -920 291 105 5 4 chr15 28608075 28608285 -57087469 + AluSq SINE Alu 1 295 -5 * 624 144 8 34 chr15 28608283 28608401 -57087353 + Charlie2b DNA MER1_type 1873 1987 -795 863 150 81 62 chr15 28609235 28609395 -57086359 + FRAM SINE Alu 4 166 0 652 213 50 69 chr15 28609448 28609591 -57086163 + L1ME3A LINE L1 5908 6042 -120 2219 92 7 7 chr15 28609591 28609884 -57085870 - AluSx SINE Alu -19 293 1 652 213 50 69 chr15 28609884 28610003 -57085751 + L1ME3A LINE L1 6042 6162 0 1891 161 97 49 chr15 28610845 28611235 -57084519 + MLT2D LTR ERVL 2 410 -4 302 215 0 15 chr15 28611406 28611471 -57084283 + MLT1J2 LTR MaLR 61 124 -326 2135 114 0 0 chr15 28611757 28612069 -57083685 + AluSx SINE Alu 1 312 0 1979 143 7 0 chr15 28613010 28613304 -57082450 - AluSx SINE Alu -15 297 2 1260 81 55 150 chr15 28613405 28613678 -57082076 + L1PA13 LINE L1 5898 6144 -19 225 355 78 35 chr15 28614664 28614805 -57080949 + L2 LINE L2 2489 2635 -679 530 367 126 25 chr15 28614850 28615256 -57080498 + L2 LINE L2 2821 3267 -5 1815 161 0 41 chr15 28615506 28615822 -57079932 - AluJo SINE Alu -9 303 1 21 0 0 0 chr15 28616079 28616100 -57079654 + AT_rich Low_complexity Low_complexity 1 21 0 334 258 106 73 chr15 28616536 28616687 -57079067 + MIR3 SINE MIR 5 160 -48 504 191 22 0 chr15 28616687 28616776 -57078978 + MER20 DNA MER1_type 1 91 -128 1179 175 0 24 chr15 28616788 28616999 -57078755 + AluJo SINE Alu 86 291 -21 2218 215 43 41 chr15 28617001 28617558 -57078196 + MER74B LTR ERVL 65 622 0 471 182 30 20 chr15 28617574 28617673 -57078081 + MER20 DNA MER1_type 117 216 -3 2016 122 7 3 chr15 28617711 28617997 -57077757 - AluSx SINE Alu -11 301 15 1673 168 56 3 chr15 28620050 28620335 -57075419 + AluJb SINE Alu 1 300 -12 2319 91 0 0 chr15 28621041 28621339 -57074415 - AluSx SINE Alu -14 298 1 33 56 0 0 chr15 28622938 28622992 -57072762 + AT_rich Low_complexity Low_complexity 1 54 0 644 187 75 0 chr15 28622996 28623103 -57072651 - FLAM_A SINE Alu -18 115 1 1972 163 0 3 chr15 28623640 28623941 -57071813 + AluJo SINE Alu 1 300 -12 235 235 0 15 chr15 28623966 28624034 -57071720 - MER114 LTR ERV -580 68 2 21 71 0 0 chr15 28624316 28624358 -57071396 + AT_rich Low_complexity Low_complexity 1 42 0 1164 272 134 25 chr15 28624806 28625375 -57070379 - L1ME3 LINE L1 -211 5951 5321 2025 154 0 13 chr15 28625705 28626017 -57069737 - AluJb SINE Alu -4 308 1 1118 140 21 5 chr15 28626576 28626762 -57068992 - MER5A DNA MER1_type 0 189 1 883 171 48 0 chr15 28627631 28627777 -57067977 + MER58A DNA MER1_type 1 153 0 2385 82 0 0 chr15 28628257 28628550 -57067204 - AluSc SINE Alu 0 309 17 1677 104 33 62 chr15 28628577 28628884 -57066870 + L1MB8 LINE L1 5876 6173 -5 1845 171 0 19 chr15 28629402 28629712 -57066042 + AluJb SINE Alu 1 304 -8 1832 167 14 0 chr15 28630175 28630462 -57065292 - AluJb SINE Alu -21 291 1 2947 200 132 36 chr15 28630462 28631633 -57064121 + L1ME2 LINE L1 4887 6163 -1 754 208 0 0 chr15 28632329 28632459 -57063295 - FLAM_A SINE Alu -2 131 2 261 0 0 0 chr15 28632778 28632807 -57062947 + (TA)n Simple_repeat Simple_repeat 2 30 0 2032 119 10 23 chr15 28632808 28633110 -57062644 - AluJo SINE Alu -14 298 1 206 244 0 13 chr15 28633241 28633319 -57062435 + A-rich Low_complexity Low_complexity 4 80 0 205 243 314 0 chr15 28633492 28633562 -57062192 + MER5A DNA MER1_type 10 101 -88 241 269 0 15 chr15 28633953 28634020 -57061734 - MIR3 SINE MIR -36 172 107 21 0 0 0 chr15 28634897 28634918 -57060836 + GC_rich Low_complexity Low_complexity 1 21 0 770 145 145 21 chr15 28636437 28636582 -57059172 - FRAM SINE Alu -10 166 4 1857 149 10 7 chr15 28636749 28637051 -57058703 + AluJo SINE Alu 3 305 -7 249 310 0 60 chr15 28637393 28637493 -57058261 + L2 LINE L2 3138 3231 -41 516 257 127 40 chr15 28638052 28638328 -57057426 - L2 LINE L2 -5 3308 3009 387 306 127 6 chr15 28638361 28638518 -57057236 - L2 LINE L2 -690 2624 2449 322 228 89 49 chr15 28639011 28639134 -57056620 + L2 LINE L2 702 829 -2485 4567 230 103 39 chr15 28639136 28639222 -57056532 + L2 LINE L2 1051 1130 -2184 1990 100 37 4 chr15 28639222 28639516 -57056238 + AluSg SINE Alu 1 303 0 4567 230 103 39 chr15 28639516 28640296 -57055458 + L2 LINE L2 1130 1859 -1455 2153 113 0 10 chr15 28640296 28640589 -57055165 - AluSx SINE Alu -12 300 11 4567 230 103 39 chr15 28640589 28641208 -57054546 + L2 LINE L2 1859 2633 -681 295 146 10 15 chr15 28641377 28641440 -57054314 + MER110A LTR ERV1 383 464 -4 193 198 116 70 chr15 28641889 28641975 -57053779 + L3 LINE CR1 1463 1552 -25 2190 175 34 3 chr15 28642035 28642389 -57053365 - MLT1A1 LTR MaLR 0 365 1 636 189 85 0 chr15 28642502 28642608 -57053146 - FLAM_C SINE Alu -15 118 4 270 0 0 0 chr15 28643900 28643930 -57051824 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 164 0 53 chr15 28643933 28644214 -57051540 - AluJb SINE Alu -46 266 1 1740 160 41 3 chr15 28644479 28644772 -57050982 - AluJo SINE Alu -8 304 1 396 219 168 15 chr15 28644938 28645075 -57050679 - MER117 DNA MER1_type -39 158 1 2166 108 0 26 chr15 28648173 28648480 -57047274 + AluSx SINE Alu 1 299 -13 472 296 190 14 chr15 28649048 28649264 -57046490 - MIR SINE MIR -6 256 3 667 245 21 42 chr15 28649661 28649853 -57045901 + MIR SINE MIR 73 260 -2 325 265 147 0 chr15 28650144 28650246 -57045508 + L2 LINE L2 3180 3296 -17 811 161 0 8 chr15 28650526 28650644 -57045110 + AluJo SINE Alu 126 242 -70 2168 132 0 0 chr15 28651042 28651338 -57044416 - AluSg SINE Alu -14 296 1 473 265 20 77 chr15 28651505 28651717 -57044037 - MIR SINE MIR -27 235 37 1745 152 7 55 chr15 28651775 28652085 -57043669 - AluJo SINE Alu -17 295 1 719 281 208 19 chr15 28652483 28652540 -57043214 + L2 LINE L2 2637 2682 -631 2165 93 0 20 chr15 28652540 28652840 -57042914 - AluSx SINE Alu -18 294 1 719 281 208 19 chr15 28652840 28653351 -57042403 + L2 LINE L2 2682 3313 0 696 273 98 45 chr15 28653846 28654132 -57041622 + MLT1I LTR MaLR 109 409 0 2369 93 0 0 chr15 28654716 28655017 -57040737 - AluSx SINE Alu -8 304 4 26 30 0 0 chr15 28655369 28655402 -57040352 + AT_rich Low_complexity Low_complexity 1 33 0 2352 110 0 0 chr15 28655669 28655979 -57039775 - AluSx SINE Alu -2 310 1 1674 123 69 7 chr15 28656151 28656428 -57039326 - L1MA4 LINE L1 -6 6294 6001 207 0 0 0 chr15 28656440 28656463 -57039291 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2018 131 0 7 chr15 28656465 28656748 -57039006 - AluSx SINE Alu -31 281 1 9475 158 17 121 chr15 28656945 28657360 -57038394 - L1 LINE L1 -1764 5801 5344 2000 84 0 15 chr15 28657360 28657621 -57038133 - AluY SINE Alu -19 292 36 9475 158 17 121 chr15 28657621 28657763 -57037991 - L1 LINE L1 -2221 5344 5189 1112 216 17 4 chr15 28657763 28657999 -57037755 - AluJb SINE Alu -4 308 70 9475 158 17 121 chr15 28657999 28659893 -57035861 - L1 LINE L1 -2376 5189 3399 562 349 86 10 chr15 28659893 28660277 -57035477 - L3 LINE CR1 -636 941 529 2202 109 0 10 chr15 28660297 28660599 -57035155 + AluSx SINE Alu 1 299 -13 240 59 0 0 chr15 28660663 28660697 -57035057 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 298 310 259 25 chr15 28660729 28660968 -57034786 - L3 LINE CR1 -1075 502 208 4027 123 66 83 chr15 28661656 28662454 -57033300 + LTR1 LTR ERV1 1 785 0 452 290 165 10 chr15 28662488 28662688 -57033066 - MIR SINE MIR -19 243 13 222 37 0 0 chr15 28664243 28664270 -57031484 + (CA)n Simple_repeat Simple_repeat 2 28 0 2270 107 0 0 chr15 28664375 28664674 -57031080 - AluSq SINE Alu -14 299 1 513 276 32 0 chr15 28664874 28664997 -57030757 - MIR3 SINE MIR 0 208 82 333 242 57 81 chr15 28665083 28665207 -57030547 - L2 LINE L2 -8 3264 3144 567 271 44 17 chr15 28665852 28666033 -57029721 - MIR SINE MIR -66 196 11 193 340 21 21 chr15 28666048 28666145 -57029609 - MIR SINE MIR -92 116 20 1597 181 10 10 chr15 28669070 28669368 -57026386 + AluSg SINE Alu 11 308 -2 1938 132 7 3 chr15 28670056 28670345 -57025409 + AluJo SINE Alu 7 296 -16 899 216 108 5 chr15 28670493 28670678 -57025076 + MER20 DNA MER1_type 1 204 -15 5021 168 13 16 chr15 28673502 28674472 -57021282 + L1MB7 LINE L1 5208 6178 -6 659 194 71 68 chr15 28674482 28674734 -57021020 - L1MC5 LINE L1 -67 7894 7642 1868 122 0 72 chr15 28674734 28675038 -57020716 + AluSx SINE Alu 3 284 -28 186 71 0 0 chr15 28675041 28675069 -57020685 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1901 108 8 0 chr15 28675069 28675328 -57020426 + AluSp SINE Alu 24 284 -29 258 247 32 21 chr15 28675522 28675615 -57020139 - L1MC5 LINE L1 -491 7470 7377 2229 121 0 0 chr15 28676533 28676831 -57018923 + AluSg SINE Alu 1 298 -12 827 196 0 0 chr15 28676940 28677078 -57018676 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 28677079 28677127 -57018627 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 28677290 28677536 -57018218 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 28677755 28677813 -57017941 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 28678333 28678393 -57017361 - L2 LINE L2 -5 3267 3208 1954 23 0 0 chr15 28678463 28678679 -57017075 + AluYb8 SINE Alu 1 216 -102 22 0 0 0 chr15 28679912 28679934 -57015820 + AT_rich Low_complexity Low_complexity 1 22 0 603 143 109 0 chr15 28679961 28680080 -57015674 - L1MB4 LINE L1 -4 6176 6045 1396 100 43 5 chr15 28680101 28680311 -57015443 - L1MA3 LINE L1 -1 6304 6087 876 151 6 19 chr15 28680632 28680791 -57014963 + AluSx SINE Alu 1 157 -155 21 0 0 0 chr15 28680984 28681005 -57014749 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 28681012 28681033 -57014721 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr15 28681339 28681366 -57014388 + (A)n Simple_repeat Simple_repeat 1 27 0 1716 210 80 34 chr15 28681514 28681929 -57013825 + MER63B DNA MER1_type 1 434 -2 230 146 83 21 chr15 28684852 28684900 -57010854 - L1P3 LINE L1 -5095 780 730 22 0 0 0 chr15 28686131 28686153 -57009601 + AT_rich Low_complexity Low_complexity 1 22 0 603 143 109 0 chr15 28686180 28686299 -57009455 - L1MB4 LINE L1 -4 6176 6045 1396 100 43 5 chr15 28686320 28686530 -57009224 - L1MA3 LINE L1 -1 6304 6087 2132 120 0 3 chr15 28686851 28687150 -57008604 + AluSx SINE Alu 1 298 -14 2101 109 3 7 chr15 28687238 28687556 -57008198 + AluSg SINE Alu 1 317 0 632 315 88 55 chr15 28687725 28688331 -57007423 - L1MC4a LINE L1 -1876 5932 5307 243 224 19 109 chr15 28688541 28688630 -57007124 - L1P LINE L1 -1099 5047 4976 2383 103 0 0 chr15 28688630 28688942 -57006812 + AluSq SINE Alu 1 312 -1 243 224 19 109 chr15 28688942 28689008 -57006746 - L1P LINE L1 -1170 4976 4906 237 257 86 0 chr15 28689028 28689098 -57006656 - L1MC4a LINE L1 -1334 4812 4737 33 43 0 0 chr15 28690133 28690180 -57005574 + AT_rich Low_complexity Low_complexity 1 47 0 795 109 0 0 chr15 28690180 28690281 -57005473 - FLAM_A SINE Alu -22 120 20 255 189 0 19 chr15 28690618 28690671 -57005083 - MIR3 SINE MIR -38 170 119 243 0 0 0 chr15 28690796 28690823 -57004931 + (GA)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr15 28690827 28690874 -57004880 + (TG)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr15 28690873 28690903 -57004851 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 753 231 7 7 chr15 28690911 28691054 -57004700 - FRAM SINE Alu -33 143 1 1682 194 3 7 chr15 28691105 28691433 -57004321 + AluJb SINE Alu 1 312 0 1875 140 0 4 chr15 28691561 28691839 -57003915 - AluSx SINE Alu -15 297 21 861 141 96 34 chr15 28691943 28692120 -57003634 + MER53 DNA DNA 1 188 -1 3666 145 71 9 chr15 28694968 28695602 -57000152 + MER44D DNA MER2_type 32 704 -1 450 236 108 19 chr15 28695765 28695922 -56999832 - L2 LINE L2 -34 3279 3109 186 133 0 0 chr15 28696164 28696194 -56999560 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 404 280 87 43 chr15 28696240 28696472 -56999282 + L1MEd LINE L1 908 1128 -1362 567 40 0 0 chr15 28696472 28696546 -56999208 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 404 280 87 43 chr15 28696546 28696666 -56999088 + L1MEd LINE L1 1128 1360 -1130 1195 146 3 90 chr15 28696667 28696989 -56998765 - AluSx SINE Alu -13 299 6 266 222 32 0 chr15 28697134 28697197 -56998557 + HAL1 LINE L1 1427 1491 -1016 227 212 106 59 chr15 28697314 28697484 -56998270 + HAL1b LINE L1 756 933 -415 649 185 134 25 chr15 28697499 28697656 -56998098 + MER5B DNA MER1_type 4 177 -1 861 107 8 0 chr15 28697656 28697777 -56997977 - FLAM_C SINE Alu -9 134 13 1356 174 18 14 chr15 28697949 28698167 -56997587 - MER20 DNA MER1_type 0 219 1 903 163 130 3 chr15 28698689 28698917 -56996837 + MER33 DNA MER1_type 1 215 -93 464 177 0 0 chr15 28698917 28698995 -56996759 + Tigger5 DNA MER2_type 1 78 -2245 247 184 0 0 chr15 28698995 28699033 -56996721 - Tigger5 DNA MER2_type -3 2320 2283 401 153 0 0 chr15 28699034 28699093 -56996661 + Tigger5 DNA MER2_type 2264 2322 -1 350 207 35 0 chr15 28699093 28699180 -56996574 + MER33 DNA MER1_type 213 302 -22 36795 96 12 16 chr15 28699196 28705363 -56990391 - L1PA7 LINE L1 -1 6153 11 361 293 50 0 chr15 28705571 28705670 -56990084 + MIR SINE MIR 40 143 -119 214 195 0 0 chr15 28706151 28706192 -56989562 + (TA)n Simple_repeat Simple_repeat 2 42 0 28 48 0 0 chr15 28706239 28706281 -56989473 + AT_rich Low_complexity Low_complexity 1 42 0 3150 110 75 20 chr15 28706282 28706790 -56988964 - L1MA4 LINE L1 -7 6293 5758 2661 40 0 0 chr15 28706790 28707093 -56988661 - AluY SINE Alu -8 303 1 234 317 0 0 chr15 28707163 28707223 -56988531 + L2 LINE L2 3208 3267 -5 257 276 17 0 chr15 28707744 28707802 -56987952 - L2 LINE L2 0 3313 3255 872 272 12 12 chr15 28708021 28708267 -56987487 + MIR SINE MIR 3 248 -14 432 0 0 0 chr15 28708430 28708478 -56987276 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 827 196 0 0 chr15 28708479 28708617 -56987137 - FRAM SINE Alu -39 137 1 2301 98 7 0 chr15 28708726 28709021 -56986733 - AluSg SINE Alu -13 297 1 309 363 102 64 chr15 28709771 28710132 -56985622 + L2 LINE L2 2850 3224 -48 357 200 0 0 chr15 28710244 28710324 -56985430 + MIR SINE MIR 183 262 0 198 0 0 0 chr15 28710379 28710401 -56985353 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 243 0 0 0 chr15 28710400 28710427 -56985327 + (TC)n Simple_repeat Simple_repeat 1 27 0 1326 161 113 26 chr15 28710432 28710842 -56984912 + MLT1F LTR MaLR 69 539 -3 828 282 66 43 chr15 28711859 28712206 -56983548 + L1ME LINE L1 5433 5787 -334 1685 197 0 3 chr15 28712249 28712544 -56983210 + AluJo SINE Alu 1 294 -18 2116 72 0 11 chr15 28712582 28712845 -56982909 + AluY SINE Alu 35 294 -17 1286 166 5 23 chr15 28713051 28713268 -56982486 + AluJo SINE Alu 82 294 -18 1460 93 0 0 chr15 28713404 28713586 -56982168 + AluSg/x SINE Alu 129 310 -2 22 0 0 0 chr15 28713710 28713732 -56982022 + AT_rich Low_complexity Low_complexity 1 22 0 2670 100 3 3 chr15 28713732 28714091 -56981663 - L1PA3 LINE L1 -1 6154 5796 21 0 0 0 chr15 28714280 28714301 -56981453 + AT_rich Low_complexity Low_complexity 1 21 0 1102 186 0 0 chr15 28714382 28714565 -56981189 + AluSg/x SINE Alu 129 311 -1 22 0 0 0 chr15 28714688 28714710 -56981044 + AT_rich Low_complexity Low_complexity 1 22 0 6153 24 1 0 chr15 28714710 28715380 -56980374 - L1PA3 LINE L1 -1 6154 5484 1243 21 0 0 chr15 28715380 28715524 -56980230 - L1PA3 LINE L1 -2325 3821 3678 336 233 144 0 chr15 28715524 28715614 -56980140 + L2 LINE L2 3170 3272 0 291 162 95 27 chr15 28716590 28716664 -56979090 + MIR3 SINE MIR 121 199 -9 480 217 116 32 chr15 28717084 28717281 -56978473 + MIR SINE MIR 3 211 -51 270 164 55 0 chr15 28717243 28717298 -56978456 - MIR SINE MIR -4 258 201 * 2298 96 0 19 chr15 28717333 28717646 -56978108 + AluSc SINE Alu 1 307 -2 24 0 0 0 chr15 28718908 28718932 -56976822 + AT_rich Low_complexity Low_complexity 1 24 0 1499 234 123 10 chr15 28719778 28720344 -56975410 + MER115 DNA AcHobo 1 689 -4 936 196 0 0 chr15 28721520 28721683 -56974071 - FRAM SINE Alu -4 172 10 905 226 6 0 chr15 28722388 28722552 -56973202 - FRAM SINE Alu -1 165 1 239 243 216 43 chr15 28722949 28723160 -56972594 - L2 LINE L2 -338 2976 2712 1911 154 13 0 chr15 28723160 28723458 -56972296 - AluJb SINE Alu -10 302 1 239 243 216 43 chr15 28723458 28723501 -56972253 - L2 LINE L2 -602 2712 2678 319 262 107 16 chr15 28723710 28723832 -56971922 + L2 LINE L2 3138 3270 -2 706 226 53 11 chr15 28724100 28724290 -56971464 - L1MC1 LINE L1 -70 6263 6066 2172 122 7 0 chr15 28725885 28726179 -56969575 + AluSx SINE Alu 1 296 -16 218 269 104 0 chr15 28726200 28726267 -56969487 + MIR SINE MIR 47 120 -142 485 221 103 69 chr15 28727002 28727206 -56968548 - MIR SINE MIR -50 212 2 342 348 67 0 chr15 28727724 28727859 -56967895 - L2 LINE L2 -11 3261 3118 2243 94 14 0 chr15 28727910 28728198 -56967556 + AluSx SINE Alu 1 292 -20 185 323 93 57 chr15 28728417 28728770 -56966984 - L2 LINE L2 -338 2976 2611 929 146 0 141 chr15 28728890 28729103 -56966651 - AluJo SINE Alu -26 286 104 217 300 133 0 chr15 28729209 28729299 -56966455 + MIR3 SINE MIR 53 154 -54 1592 228 103 123 chr15 28729302 28729895 -56965859 + HsTC2 DNA Tc2 1 1735 -163 735 184 31 31 chr15 28729895 28729972 -56965782 + L1ME1 LINE L1 5695 5771 -395 1847 158 16 26 chr15 28729972 28730283 -56965471 + AluJo SINE Alu 1 308 -4 735 184 31 31 chr15 28730283 28730368 -56965386 + L1ME1 LINE L1 5770 5857 -309 2095 104 14 0 chr15 28730825 28731105 -56964649 + AluSx SINE Alu 9 292 -20 929 146 0 141 chr15 28731797 28732010 -56963744 - AluJb SINE Alu -26 286 104 188 300 133 0 chr15 28732116 28732206 -56963548 + MIR3 SINE MIR 53 154 -54 1413 237 101 126 chr15 28732209 28732805 -56962949 + HsTC2 DNA Tc2 1 1735 -163 1725 200 35 52 chr15 28732805 28732882 -56962872 + L1ME1 LINE L1 5695 5772 -394 1847 158 16 26 chr15 28732882 28733193 -56962561 + AluJo SINE Alu 1 308 -4 1725 200 35 52 chr15 28733193 28733595 -56962159 + L1ME1 LINE L1 5772 6166 0 491 173 54 113 chr15 28733600 28733656 -56962098 + HsTC2 DNA Tc2 1723 1781 -117 1508 186 7 17 chr15 28733656 28733947 -56961807 - AluJo SINE Alu -24 288 1 491 173 54 113 chr15 28733947 28733958 -56961796 + HsTC2 DNA Tc2 1781 1791 -107 2420 70 0 7 chr15 28733958 28734256 -56961498 - AluY SINE Alu -15 296 1 491 173 54 113 chr15 28734256 28734372 -56961382 + HsTC2 DNA Tc2 1791 1896 -2 1856 146 34 24 chr15 28734382 28734677 -56961077 - AluJo SINE Alu -14 298 1 2069 187 85 35 chr15 28735186 28735298 -56960456 + MLT1D LTR MaLR 1 106 -399 2259 113 0 3 chr15 28735298 28735599 -56960155 - AluSq SINE Alu -13 300 1 2069 187 85 35 chr15 28735599 28735967 -56959787 + MLT1D LTR MaLR 106 505 0 463 205 94 0 chr15 28736004 28736121 -56959633 + LTR33 LTR ERVL 2 129 -392 287 256 122 29 chr15 28736229 28736401 -56959353 + LTR33 LTR ERVL 334 521 0 264 264 0 0 chr15 28736487 28736540 -56959214 - MIR3 SINE MIR -7 201 149 912 304 150 41 chr15 28736548 28737591 -56958163 + L2 LINE L2 2040 3269 -3 1086 174 0 71 chr15 28738018 28738257 -56957497 - AluJo SINE Alu 0 309 86 2417 79 0 0 chr15 28738702 28739007 -56956747 - AluSx SINE Alu -7 305 1 278 327 158 5 chr15 28739533 28739735 -56956019 + MIR SINE MIR 16 248 -14 247 256 77 0 chr15 28741340 28741418 -56954336 - MER103 DNA DNA -61 105 22 567 286 63 49 chr15 28742229 28742656 -56953098 - L1MC4 LINE L1 -15 8027 7595 630 293 117 3 chr15 28742683 28742983 -56952771 - L1MC4 LINE L1 -569 7473 7140 384 237 163 0 chr15 28743441 28743576 -56952178 - MIR3 SINE MIR -7 201 45 21 36 0 0 chr15 28744179 28744207 -56951547 + GC_rich Low_complexity Low_complexity 1 28 0 329 296 17 108 chr15 28744336 28744633 -56951121 - L1M2 LINE L1 -5907 942 673 197 250 54 65 chr15 28746357 28746449 -56949305 - MIR SINE MIR -62 200 110 288 266 0 0 chr15 28747645 28747709 -56948045 - MIR3 SINE MIR -24 184 121 237 135 0 0 chr15 28747995 28748032 -56947722 + MLT1L LTR MaLR 192 228 -387 657 247 18 6 chr15 28748035 28748205 -56947549 + MLT1L LTR MaLR 439 610 -5 426 267 74 78 chr15 28748306 28748430 -56947324 + MIR SINE MIR 1 125 -137 2160 94 27 3 chr15 28748430 28748728 -56947026 - AluSc SINE Alu -4 305 1 426 267 74 78 chr15 28748728 28748820 -56946934 + MIR SINE MIR 125 216 -46 1248 176 76 113 chr15 28748938 28749223 -56946531 + L1MC5 LINE L1 7374 7668 -293 2114 88 4 0 chr15 28749223 28749486 -56946268 - AluSp SINE Alu -26 287 24 219 36 0 0 chr15 28749486 28749514 -56946240 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1985 115 0 66 chr15 28749515 28749819 -56945935 - AluSx SINE Alu -26 286 3 1248 176 76 113 chr15 28749819 28750071 -56945683 + L1MC5 LINE L1 7666 7894 -67 5021 167 25 16 chr15 28750081 28751045 -56944709 - L1MB7 LINE L1 -6 6178 5199 194 0 39 0 chr15 28751045 28751071 -56944683 + (TG)n Simple_repeat Simple_repeat 2 28 0 5021 167 25 16 chr15 28751071 28751092 -56944662 - L1MB7 LINE L1 -985 5199 5180 3392 225 30 6 chr15 28751098 28751942 -56943812 - L1MB7 LINE L1 -2135 4011 3148 6699 217 24 51 chr15 28751947 28753445 -56942309 + L1MB4 LINE L1 3525 5062 -1084 739 205 0 8 chr15 28753445 28753567 -56942187 + FLAM_A SINE Alu 2 122 -11 6699 217 24 51 chr15 28753567 28753726 -56942028 + L1MB4 LINE L1 5062 5224 -922 222 37 0 0 chr15 28753726 28753753 -56942001 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1551 194 0 14 chr15 28753753 28754042 -56941712 - AluJo SINE Alu -26 286 2 6699 217 24 51 chr15 28754042 28754201 -56941553 + L1MB4 LINE L1 5223 5385 -761 1670 146 25 77 chr15 28754201 28754405 -56941349 + L1MB4 LINE L1 5830 6043 -137 2012 102 0 18 chr15 28754405 28754679 -56941075 + AluSx SINE Alu 27 295 -17 1670 146 25 77 chr15 28754679 28754744 -56941010 + L1MB4 LINE L1 6043 6110 -70 208 53 53 0 chr15 28754744 28754782 -56940972 + (TA)n Simple_repeat Simple_repeat 2 41 0 1944 142 3 0 chr15 28754792 28755080 -56940674 - AluSx SINE Alu -23 289 1 1670 146 25 77 chr15 28755080 28755162 -56940592 + L1MB4 LINE L1 6119 6174 -6 6699 217 24 51 chr15 28755162 28755207 -56940547 + L1MB4 LINE L1 5384 5339 -807 380 174 0 0 chr15 28755182 28755251 -56940503 + L1MB8 LINE L1 6089 6157 -21 * 905 285 87 76 chr15 28755248 28756323 -56939431 - L1M4 LINE L1 -1032 5114 4029 2039 143 3 3 chr15 28756460 28756767 -56938987 + AluSx SINE Alu 1 307 -5 1466 184 41 0 chr15 28756796 28757063 -56938691 - AluJo SINE Alu -34 278 1 21 36 0 0 chr15 28757354 28757382 -56938372 + AT_rich Low_complexity Low_complexity 1 28 0 207 175 0 0 chr15 28759008 28759048 -56936706 + GA-rich Low_complexity Low_complexity 2 41 0 34 42 0 0 chr15 28759132 28759180 -56936574 + GC_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr15 28759376 28759399 -56936355 + GC_rich Low_complexity Low_complexity 1 23 0 210 91 0 0 chr15 28759438 28759471 -56936283 + (TGGGGG)n Simple_repeat Simple_repeat 5 37 0 334 310 76 0 chr15 28760498 28760656 -56935098 - MIR SINE MIR -3 259 90 1111 186 101 0 chr15 28761184 28761383 -56934371 - MER20 DNA MER1_type 0 219 1 1950 132 7 3 chr15 28761531 28761819 -56933935 - AluJo SINE Alu -17 295 7 2188 130 0 0 chr15 28762507 28762815 -56932939 - AluSg SINE Alu -2 308 1 389 281 91 63 chr15 28762838 28762925 -56932829 + L2 LINE L2 2884 2967 -346 960 178 17 28 chr15 28762925 28763105 -56932649 + MER45A DNA AcHobo 1 178 0 389 281 91 63 chr15 28763105 28763270 -56932484 + L2 LINE L2 2967 3143 -170 1245 247 123 24 chr15 28763302 28763944 -56931810 - L2 LINE L2 -61 3252 2537 872 242 47 19 chr15 28765460 28765736 -56930018 - L1MB8 LINE L1 0 6178 5889 22 0 0 0 chr15 28766172 28766194 -56929560 + AT_rich Low_complexity Low_complexity 1 22 0 1821 158 0 27 chr15 28766194 28766492 -56929262 - AluJb SINE Alu -22 290 1 2221 117 0 0 chr15 28766960 28767259 -56928495 + AluY SINE Alu 1 299 -12 21 36 0 0 chr15 28768424 28768452 -56927302 + GC_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr15 28768783 28768814 -56926940 + GC_rich Low_complexity Low_complexity 1 31 0 269 252 223 0 chr15 28769274 28769413 -56926341 + MIR SINE MIR 83 252 -10 274 265 51 51 chr15 28770098 28770215 -56925539 - MIR SINE MIR -62 200 84 1247 153 0 38 chr15 28771360 28771569 -56924185 - AluJb SINE Alu -111 201 1 2269 117 0 0 chr15 28772037 28772346 -56923408 + AluY SINE Alu 1 309 -2 414 241 55 28 chr15 28772432 28772577 -56923177 + L2 LINE L2 2665 2813 -501 2323 104 0 0 chr15 28772910 28773207 -56922547 - AluSx SINE Alu -15 297 1 480 253 180 64 chr15 28773321 28773361 -56922393 - MIR SINE MIR 0 262 228 333 0 0 0 chr15 28773361 28773398 -56922356 + (TG)n Simple_repeat Simple_repeat 2 38 0 1565 128 66 29 chr15 28773404 28773647 -56922107 - AluSg SINE Alu -58 252 1 480 253 180 64 chr15 28773647 28773832 -56921922 - MIR SINE MIR -38 224 3 862 214 136 8 chr15 28774209 28774466 -56921288 - LTR33 LTR ERVL 0 521 232 359 298 0 26 chr15 28774496 28774610 -56921144 - LTR33 LTR ERVL -388 133 23 279 114 0 0 chr15 28774707 28774751 -56921003 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 415 186 97 97 chr15 28774969 28775114 -56920640 - MLT1K LTR MaLR 0 588 444 249 307 13 0 chr15 28775310 28775385 -56920369 - MLT1K LTR MaLR -418 170 95 237 294 111 32 chr15 28775864 28775990 -56919764 + MIR SINE MIR 24 159 -103 251 239 14 0 chr15 28776035 28776106 -56919648 + (TA)n Simple_repeat Simple_repeat 2 73 0 311 223 107 19 chr15 28776134 28776237 -56919517 - MIR SINE MIR -70 192 81 506 183 0 8 chr15 28777073 28777199 -56918555 + CT-rich Low_complexity Low_complexity 2 126 0 25 75 0 0 chr15 28777854 28777907 -56917847 + AT_rich Low_complexity Low_complexity 1 53 0 657 141 10 0 chr15 28780652 28780751 -56915003 - LTR12 LTR ERV1 0 714 615 250 227 57 23 chr15 28780753 28780841 -56914913 - LTR30 LTR ERV1 -79 643 553 1063 106 15 164 chr15 28780842 28781116 -56914638 - LTR12 LTR ERV1 -429 285 53 264 211 0 0 chr15 28781116 28781168 -56914586 - LTR30 LTR ERV1 -670 52 1 247 240 21 52 chr15 28782563 28782659 -56913095 - MIR SINE MIR -56 206 114 434 217 11 0 chr15 28782728 28782820 -56912934 - MER5A DNA MER1_type -88 101 9 238 268 99 0 chr15 28782817 28782888 -56912866 - MIR SINE MIR -96 112 35 * 402 74 0 0 chr15 28783554 28783608 -56912146 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 4287 156 38 79 chr15 28783627 28784235 -56911519 + MER21A LTR ERV1 14 573 -358 2004 128 9 41 chr15 28784235 28784409 -56911345 - AluJo SINE Alu -3 309 148 2327 98 3 0 chr15 28784409 28784705 -56911049 - AluY SINE Alu -14 297 1 2004 128 9 41 chr15 28784705 28784849 -56910905 - AluJo SINE Alu -164 148 1 4287 156 38 79 chr15 28784849 28785166 -56910588 + MER21A LTR ERV1 573 901 -30 246 207 232 0 chr15 28785201 28785283 -56910471 - MIR SINE MIR -109 153 53 228 152 0 43 chr15 28785587 28785633 -56910121 - MER5B DNA MER1_type -134 44 1 2273 92 0 0 chr15 28785637 28785931 -56909823 + AluY SINE Alu 2 295 -16 186 194 15 90 chr15 28785953 28786020 -56909734 + L3 LINE CR1 139 200 -1377 400 163 380 0 chr15 28786780 28786909 -56908845 + MER104 DNA MER2_type 3 180 0 756 220 11 11 chr15 28787071 28787248 -56908506 - MER5B DNA MER1_type 0 178 2 438 204 150 20 chr15 28788021 28788168 -56907586 + L1MC5 LINE L1 7764 7929 -32 333 273 83 2 chr15 28789161 28789292 -56906462 - MIR SINE MIR -73 135 17 724 257 67 9 chr15 28789579 28789789 -56905965 - MIR SINE MIR -16 246 25 577 184 0 44 chr15 28790033 28790147 -56905607 + AluJo SINE Alu 26 134 -178 953 262 93 4 chr15 28790600 28790879 -56904875 + LTR16C LTR ERVL 188 491 0 1767 167 3 33 chr15 28790897 28791202 -56904552 + AluJb SINE Alu 1 296 -16 336 232 212 50 chr15 28791457 28791655 -56904099 + L2 LINE L2 3084 3313 0 2627 40 0 49 chr15 28791757 28792084 -56903670 + AluY SINE Alu 1 311 0 360 0 0 0 chr15 28792089 28792129 -56903625 + (TA)n Simple_repeat Simple_repeat 2 41 0 521 194 35 56 chr15 28792290 28792410 -56903344 - MIR SINE MIR -71 191 73 2792 98 0 8 chr15 28792410 28792788 -56902966 + THE1C LTR MaLR 1 375 0 521 194 35 56 chr15 28792788 28792811 -56902943 - MIR SINE MIR -189 73 51 2172 90 0 13 chr15 28792918 28793217 -56902537 - AluY SINE Alu -15 296 2 778 232 17 11 chr15 28793221 28793398 -56902356 + MER5B DNA MER1_type 1 178 0 434 264 43 7 chr15 28794074 28794214 -56901540 + MIR3 SINE MIR 4 148 -60 240 35 0 0 chr15 28795084 28795113 -56900641 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2002 147 0 13 chr15 28795966 28796272 -56899482 + AluSx SINE Alu 1 302 -10 3819 141 61 13 chr15 28796762 28796993 -56898761 + L1MB3 LINE L1 5445 5663 -520 300 53 0 0 chr15 28796993 28797031 -56898723 + (TA)n Simple_repeat Simple_repeat 2 39 0 3819 141 61 13 chr15 28797031 28797503 -56898251 + L1MB3 LINE L1 5663 6182 -1 492 99 0 0 chr15 28797512 28797583 -56898171 + (TA)n Simple_repeat Simple_repeat 1 71 0 436 281 72 26 chr15 28797669 28797822 -56897932 - MER117 DNA MER1_type -14 183 24 458 282 108 33 chr15 28798102 28798315 -56897439 + L1MC4 LINE L1 6772 7000 -1042 359 162 216 14 chr15 28798839 28798913 -56896841 - AluJb SINE Alu -19 283 195 2021 112 4 4 chr15 28799235 28799512 -56896242 + AluSx SINE Alu 1 277 -35 180 0 0 0 chr15 28799519 28799539 -56896215 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1699 52 5 0 chr15 28799700 28799910 -56895844 - L1PA5 LINE L1 -5 6149 5939 1247 185 143 0 chr15 28799912 28800150 -56895604 - AluJb SINE Alu -40 272 1 462 293 50 39 chr15 28800798 28800928 -56894826 - MIR3 SINE MIR -24 184 50 180 0 0 0 chr15 28800928 28800948 -56894806 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 462 293 50 39 chr15 28800948 28800998 -56894756 - MIR3 SINE MIR -158 50 2 293 222 63 32 chr15 28801582 28801708 -56894046 - L1ME4a LINE L1 -219 5902 5773 281 258 129 61 chr15 28802627 28802759 -56892995 - L3 LINE CR1 -3 1574 1434 725 281 96 39 chr15 28802920 28803254 -56892500 + MLT1K LTR MaLR 205 557 -31 196 140 60 0 chr15 28803951 28804001 -56891753 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 352 264 51 76 chr15 28804122 28804187 -56891567 - L1ME4a LINE L1 -342 5779 5714 986 210 35 0 chr15 28804187 28804387 -56891367 + MER3 DNA MER1_type 1 207 -2 352 264 51 76 chr15 28804387 28804518 -56891236 - L1ME4a LINE L1 -407 5714 5588 265 274 125 53 chr15 28804509 28804626 -56891128 + L1ME4a LINE L1 5839 5946 -175 * 297 0 0 0 chr15 28804626 28804659 -56891095 + (CA)n Simple_repeat Simple_repeat 2 34 0 265 274 125 53 chr15 28804659 28804749 -56891005 + L1ME4a LINE L1 5946 6061 -60 2023 139 81 0 chr15 28804862 28805206 -56890548 + MSTA LTR MaLR 1 372 -56 1931 158 0 16 chr15 28805208 28805524 -56890230 - AluSx SINE Alu -1 311 1 753 200 79 30 chr15 28806015 28806180 -56889574 - FAM SINE Alu -2 173 1 2434 86 0 0 chr15 28806739 28807043 -56888711 - AluSx SINE Alu -8 304 1 24 0 0 0 chr15 28807629 28807653 -56888101 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr15 28808345 28808366 -56887388 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2534 115 15 58 chr15 28808612 28809081 -56886673 + L1MA9 LINE L1 5864 6312 0 313 319 35 18 chr15 28809105 28809218 -56886536 + L2 LINE L2 3158 3272 0 1065 305 120 41 chr15 28810117 28810950 -56884804 + L2 LINE L2 2364 3263 -9 180 0 0 0 chr15 28811982 28812002 -56883752 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1669 155 39 14 chr15 28812002 28812279 -56883475 - AluJo SINE Alu -25 287 1 300 188 0 0 chr15 28812360 28812424 -56883330 + (CA)n Simple_repeat Simple_repeat 2 65 0 236 386 75 35 chr15 28813005 28813259 -56882495 + L2 LINE L2 2932 3195 -77 409 38 0 0 chr15 28814564 28814617 -56881137 - MADE1 DNA Mariner -27 53 1 336 24 0 0 chr15 28815069 28815110 -56880644 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 258 373 109 0 chr15 28815775 28815885 -56879869 - L2 LINE L2 0 3272 3151 196 283 178 56 chr15 28816920 28817100 -56878654 - L2 LINE L2 0 3313 3112 214 353 0 0 chr15 28817123 28817191 -56878563 - L2 LINE L2 -471 2843 2776 1689 134 0 0 chr15 28817191 28817437 -56878317 - AluSx SINE Alu -6 306 61 756 331 79 26 chr15 28817444 28817940 -56877814 - L2 LINE L2 -619 2695 2174 391 318 95 0 chr15 28818727 28818875 -56876879 + MIR SINE MIR 35 196 -66 25 0 0 0 chr15 28819334 28819359 -56876395 + AT_rich Low_complexity Low_complexity 1 25 0 251 241 84 48 chr15 28821630 28821713 -56874041 + MIR SINE MIR 118 203 -59 328 268 98 16 chr15 28822210 28822333 -56873421 - L2 LINE L2 -4 3309 3177 24 32 0 0 chr15 28822521 28822552 -56873202 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr15 28822811 28822833 -56872921 + AT_rich Low_complexity Low_complexity 1 22 0 597 226 28 94 chr15 28822834 28823005 -56872749 - L1MC5 LINE L1 -34 7927 7746 1717 116 0 8 chr15 28823005 28823256 -56872498 + AluSc SINE Alu 60 308 -1 597 226 28 94 chr15 28823256 28823478 -56872276 - L1MC5 LINE L1 -215 7746 7560 249 372 44 35 chr15 28823821 28823934 -56871820 + L2 LINE L2 3117 3230 -42 1530 188 44 0 chr15 28824759 28824888 -56870866 + AluJo SINE Alu 1 123 -189 285 29 0 0 chr15 28824888 28824922 -56870832 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1530 188 44 0 chr15 28824922 28825090 -56870664 + AluJo SINE Alu 123 311 -1 264 253 152 0 chr15 28825508 28825607 -56870147 + L2 LINE L2 3154 3267 -5 1861 155 14 0 chr15 28827021 28827326 -56868428 - AluJb SINE Alu 0 309 1 801 301 7 14 chr15 28827874 28828161 -56867593 + L2 LINE L2 2763 3047 -266 1342 244 28 19 chr15 28828163 28828551 -56867203 - LTR16A LTR ERVL 0 450 1 729 250 27 59 chr15 28828555 28828811 -56866943 + L2 LINE L2 3049 3296 -17 312 245 14 82 chr15 28828811 28828958 -56866796 + L1MC5 LINE L1 7752 7888 -73 713 291 167 34 chr15 28829485 28829928 -56865826 + L2 LINE L2 2812 3313 0 238 174 43 152 chr15 28830013 28830105 -56865649 + L2 LINE L2 2636 2717 -597 900 264 37 7 chr15 28830105 28830471 -56865283 - LTR33 LTR ERVL -82 439 6 563 277 73 47 chr15 28830473 28830831 -56864923 + L2 LINE L2 2853 3312 -1 191 250 0 0 chr15 28830966 28831002 -56864752 + L2 LINE L2 2609 2644 -670 1629 179 71 22 chr15 28831044 28831408 -56864346 - MSTD LTR MaLR -6 390 9 1595 184 4 4 chr15 28831448 28831720 -56864034 + AluJb SINE Alu 38 309 -3 1771 208 0 0 chr15 28831817 28832120 -56863634 - AluJb SINE Alu -9 303 1 1369 223 23 7 chr15 28832181 28832503 -56863251 + AluJo SINE Alu 1 312 0 423 284 163 5 chr15 28832585 28832800 -56862954 + L1ME3 LINE L1 5255 5503 -2305 2057 173 26 62 chr15 28832800 28833302 -56862452 - MLT1D LTR MaLR 0 505 22 310 287 16 16 chr15 28833901 28834030 -56861724 + L1ME3 LINE L1 5478 5606 -515 1299 210 55 18 chr15 28834099 28834442 -56861312 + L1ME3 LINE L1 5807 6162 0 907 246 55 64 chr15 28834469 28835014 -56860740 + L1MC4 LINE L1 6938 7477 -565 225 326 0 76 chr15 28835014 28835106 -56860648 - MER5B DNA MER1_type -86 92 8 2043 128 3 3 chr15 28835414 28835711 -56860043 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr15 28835720 28835742 -56860012 + AT_rich Low_complexity Low_complexity 1 22 0 1242 137 0 9 chr15 28835753 28835972 -56859782 + L1MB3 LINE L1 5960 6176 -7 1323 163 7 58 chr15 28836138 28836433 -56859321 + L1MB7 LINE L1 5900 6179 -5 638 256 120 47 chr15 28836437 28837114 -56858640 + L1MC5 LINE L1 7289 7894 -67 2109 143 10 0 chr15 28837282 28837589 -56858165 + AluSx SINE Alu 1 310 -2 1845 244 73 4 chr15 28838104 28838584 -56857170 + MER69B DNA AcHobo 7 519 -707 414 238 40 0 chr15 28838647 28838773 -56856981 + L1M4 LINE L1 2150 2280 -3866 1910 194 90 11 chr15 28838782 28839335 -56856419 + MER69B DNA AcHobo 531 1127 -99 1193 157 0 20 chr15 28839335 28839352 -56856402 + L1MA7 LINE L1 5650 5666 -510 2074 124 10 0 chr15 28839352 28839481 -56856273 + AluSx SINE Alu 1 127 -185 2290 97 0 7 chr15 28839481 28839779 -56855975 + AluSg SINE Alu 1 296 -14 2074 124 10 0 chr15 28839779 28839940 -56855814 + AluSx SINE Alu 127 294 -18 1193 157 0 20 chr15 28839940 28840153 -56855601 + L1MA7 LINE L1 5666 5873 -303 334 259 99 23 chr15 28840153 28840284 -56855470 + L2 LINE L2 2920 3060 -212 3260 178 15 0 chr15 28840800 28841386 -56854368 + L1PB4 LINE L1 5548 6142 -14 195 186 0 0 chr15 28841414 28841457 -56854297 + (TA)n Simple_repeat Simple_repeat 1 43 0 816 244 111 11 chr15 28841625 28841895 -56853859 + MER5C DNA MER1_type 28 324 0 941 112 0 0 chr15 28842068 28842211 -56853543 + L1MA5A LINE L1 6136 6278 -19 433 197 95 7 chr15 28842286 28842433 -56853321 - L1M4 LINE L1 -896 5250 5091 * 637 169 58 0 chr15 28842432 28842586 -56853168 + L1M4 LINE L1 4929 5091 -1055 191 225 0 0 chr15 28842586 28842626 -56853128 + MER5B DNA MER1_type 138 177 -1 1334 140 149 69 chr15 28842710 28843060 -56852694 - MER51A LTR ERV1 0 634 257 243 111 0 0 chr15 28843058 28843094 -56852660 - MER51A LTR ERV1 -598 36 1 * 1877 153 10 3 chr15 28843173 28843480 -56852274 - AluJb SINE Alu -1 311 3 333 264 28 0 chr15 28843658 28843764 -56851990 - L1ME LINE L1 -462 5659 5551 339 306 11 94 chr15 28843811 28843862 -56851892 + L1M4 LINE L1 4171 4225 -1921 3179 120 17 77 chr15 28843862 28844138 -56851616 + MER34B LTR ERV1 1 292 -273 2353 74 7 3 chr15 28844138 28844434 -56851320 + AluY SINE Alu 1 297 -14 3179 120 17 77 chr15 28844434 28844670 -56851084 + MER34B LTR ERV1 292 475 -90 2146 108 0 14 chr15 28844670 28844980 -56850774 - AluSx SINE Alu 0 306 1 3179 120 17 77 chr15 28844980 28845066 -56850688 + MER34B LTR ERV1 475 565 0 339 306 11 94 chr15 28845066 28845108 -56850646 + L1M4 LINE L1 4225 4269 -1877 2324 82 0 23 chr15 28845108 28845413 -56850341 - AluY SINE Alu -13 298 1 339 306 11 94 chr15 28845413 28845498 -56850256 + L1M4 LINE L1 4269 4335 -1811 267 312 0 0 chr15 28845502 28845579 -56850175 - MER2 DNA MER2_type 0 345 269 892 151 0 70 chr15 28845662 28845750 -56850004 - MER2 DNA MER2_type -172 173 103 5885 58 30 16 chr15 28845750 28846519 -56849235 + LTR17 LTR ERV1 1 780 0 892 151 0 70 chr15 28846519 28846615 -56849139 - MER2 DNA MER2_type -242 103 2 22 0 0 0 chr15 28846632 28846654 -56849100 + AT_rich Low_complexity Low_complexity 1 22 0 1324 234 98 44 chr15 28846666 28846702 -56849052 + L1M4 LINE L1 4377 4410 -1736 2018 147 0 13 chr15 28846702 28847043 -56848711 + AluSx SINE Alu 1 312 0 1324 234 98 44 chr15 28847043 28847486 -56848268 + L1M4 LINE L1 4410 4901 -1245 1957 150 3 3 chr15 28847486 28847793 -56847961 - AluSx SINE Alu -5 307 1 1324 234 98 44 chr15 28847793 28847945 -56847809 + L1M4 LINE L1 4901 5043 -1103 875 163 132 36 chr15 28847961 28848212 -56847542 + MER33 DNA MER1_type 18 292 -32 1296 183 58 4 chr15 28848217 28848474 -56847280 + L1MC3 LINE L1 6673 6943 -842 235 286 226 0 chr15 28848588 28848672 -56847082 - L2 LINE L2 -16 3256 3154 246 193 23 45 chr15 28848850 28848938 -56846816 - L1MC4 LINE L1 -1340 6702 6617 273 57 0 0 chr15 28848942 28848977 -56846777 + (TA)n Simple_repeat Simple_repeat 1 35 0 3476 104 24 4 chr15 28848996 28849498 -56846256 - MER41E LTR ERV1 0 512 1 182 243 147 22 chr15 28850053 28850189 -56845565 + L2 LINE L2 2239 2391 -923 1076 256 81 77 chr15 28850346 28850853 -56844901 - L2 LINE L2 -1 3312 2804 239 132 26 0 chr15 28850859 28850897 -56844857 - L2 LINE L2 -1906 1408 1370 30 59 0 0 chr15 28851162 28851213 -56844541 + AT_rich Low_complexity Low_complexity 1 51 0 222 37 0 0 chr15 28851780 28851807 -56843947 + (TG)n Simple_repeat Simple_repeat 2 28 0 390 251 59 87 chr15 28851971 28852258 -56843496 + L1ME4a LINE L1 5629 5907 -214 248 150 0 0 chr15 28852309 28852349 -56843405 - MIR SINE MIR 0 262 223 1190 208 57 59 chr15 28852441 28852616 -56843138 - Charlie4a DNA MER1_type -1472 489 315 6822 40 5 0 chr15 28852616 28853641 -56842113 - L1PA6 LINE L1 -3 6151 5189 1190 208 57 59 chr15 28853641 28853772 -56841982 - Charlie4a DNA MER1_type -1646 315 185 2243 96 0 7 chr15 28853772 28854065 -56841689 + AluSx SINE Alu 7 297 -15 1190 208 57 59 chr15 28854065 28854195 -56841559 - Charlie4a DNA MER1_type -1776 185 53 1494 236 68 47 chr15 28854213 28854498 -56841256 + L2 LINE L2 2711 2989 -324 1600 195 46 6 chr15 28854498 28854826 -56840928 - MER58B DNA MER1_type 0 341 1 1494 236 68 47 chr15 28854826 28855121 -56840633 + L2 LINE L2 2989 3313 0 278 324 28 37 chr15 28855126 28855234 -56840520 - L3 LINE CR1 -430 1147 1041 475 288 212 17 chr15 28855290 28855582 -56840172 - L3 LINE CR1 -681 896 548 898 240 61 43 chr15 28855771 28856156 -56839598 + L1ME2 LINE L1 5741 6159 -7 282 364 164 14 chr15 28856349 28856635 -56839119 - L3 LINE CR1 -1107 470 142 410 260 240 7 chr15 28856793 28856943 -56838811 + MIR SINE MIR 51 235 -27 2086 121 29 13 chr15 28857654 28857961 -56837793 + AluSx SINE Alu 1 312 0 21 0 0 0 chr15 28857986 28858007 -56837747 + AT_rich Low_complexity Low_complexity 1 21 0 2163 130 0 0 chr15 28858056 28858355 -56837399 + AluSq SINE Alu 1 299 -14 2385 90 0 0 chr15 28858377 28858676 -56837078 - AluSx SINE Alu -13 299 1 559 287 130 9 chr15 28858676 28858892 -56836862 - MIR SINE MIR -1 261 20 211 226 226 20 chr15 28859980 28860082 -56835672 + L2 LINE L2 3147 3269 -3 22 35 0 0 chr15 28860491 28860520 -56835234 + AT_rich Low_complexity Low_complexity 1 29 0 2316 103 0 0 chr15 28860525 28860836 -56834918 - AluY SINE Alu 0 311 1 2406 84 0 7 chr15 28860843 28861152 -56834602 - AluSg SINE Alu -3 307 1 1947 154 3 7 chr15 28861154 28861446 -56834308 - AluSx SINE Alu -21 291 1 32 26 0 0 chr15 28861613 28861652 -56834102 + AT_rich Low_complexity Low_complexity 1 39 0 872 270 45 9 chr15 28861659 28861881 -56833873 - MIR SINE MIR -10 252 23 272 203 39 148 chr15 28861892 28861984 -56833770 + MER5A DNA MER1_type 45 121 -68 2411 86 0 0 chr15 28861984 28862288 -56833466 - AluSc SINE Alu -5 304 1 272 203 39 148 chr15 28862288 28862323 -56833431 + MER5A DNA MER1_type 121 158 -31 1369 202 62 35 chr15 28862410 28862845 -56832909 + HsTC2 DNA Tc2 1276 1898 0 2417 93 0 3 chr15 28862854 28863166 -56832588 + AluSx SINE Alu 1 311 -1 813 183 0 0 chr15 28863207 28863338 -56832416 + FLAM_C SINE Alu 1 131 -2 1211 174 41 9 chr15 28863493 28863711 -56832043 + AluJb SINE Alu 85 309 -3 824 138 0 72 chr15 28864145 28864187 -56831567 + MER41A LTR ERV1 400 443 -111 2443 60 0 7 chr15 28864187 28864487 -56831267 - AluY SINE Alu -13 298 1 824 138 0 72 chr15 28864487 28864611 -56831143 + MER41A LTR ERV1 443 554 0 10262 121 21 11 chr15 28864611 28866194 -56829560 + MER41A-int LTR ERV1 1 1599 -4347 3682 85 34 6 chr15 28866191 28866720 -56829034 + MER41B-int LTR ERV1 5403 5946 0 * 3281 124 36 2 chr15 28866723 28867248 -56828506 + MER41B LTR ERV1 5 547 -88 1562 179 19 51 chr15 28867539 28867679 -56828075 + AluJo SINE Alu 1 144 -168 2118 102 3 0 chr15 28867679 28867991 -56827763 + AluSp SINE Alu 1 313 0 1562 179 19 51 chr15 28867991 28868161 -56827593 + AluJo SINE Alu 144 302 -10 334 268 0 0 chr15 28869395 28869477 -56826277 + MIR SINE MIR 107 188 -74 198 255 99 57 chr15 28869716 28869857 -56825897 + L2 LINE L2 3152 3298 -15 444 214 7 43 chr15 28870194 28870334 -56825420 + LTR37B LTR ERV1 334 468 0 239 289 109 26 chr15 28870970 28871126 -56824628 - L1ME4a LINE L1 -1 6120 5952 1988 147 78 13 chr15 28871166 28871561 -56824193 - L1MB5 LINE L1 -8 6166 5746 229 283 0 0 chr15 28872437 28872490 -56823264 - L2 LINE L2 -16 3256 3204 396 59 0 0 chr15 28872493 28872544 -56823210 + (CA)n Simple_repeat Simple_repeat 2 52 0 494 226 62 0 chr15 28872551 28872697 -56823057 - MLT1J LTR MaLR -1 510 356 1897 152 13 13 chr15 28872724 28873076 -56822678 - AluJb SINE Alu 0 353 2 695 278 75 53 chr15 28873078 28873398 -56822356 - MLT1J LTR MaLR -160 351 25 2060 92 48 27 chr15 28873590 28873882 -56821872 - AluSq SINE Alu -15 298 1 606 255 247 27 chr15 28874627 28875046 -56820708 + MLT1H LTR MaLR 6 526 -23 22 0 0 0 chr15 28875341 28875363 -56820391 + AT_rich Low_complexity Low_complexity 1 22 0 2053 116 3 3 chr15 28875492 28875784 -56819970 - AluSp SINE Alu -21 292 1 2253 224 13 40 chr15 28875824 28876209 -56819545 + MLT1F LTR MaLR 1 368 -174 1411 171 16 32 chr15 28876209 28876524 -56819230 - L1MB8 LINE L1 0 6178 5869 2253 224 13 40 chr15 28876524 28876695 -56819059 + MLT1F LTR MaLR 368 542 0 259 370 55 11 chr15 28878299 28878480 -56817274 + L2 LINE L2 2628 2816 -498 237 125 62 16 chr15 28882376 28882440 -56813314 + (TAA)n Simple_repeat Simple_repeat 3 69 0 211 184 0 0 chr15 28882626 28882664 -56813090 + (TGGG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr15 28883903 28883926 -56811828 + AT_rich Low_complexity Low_complexity 1 23 0 357 315 102 32 chr15 28885267 28885483 -56810271 + L3 LINE CR1 212 442 -1135 2296 118 3 0 chr15 28885511 28885816 -56809938 - AluSx SINE Alu -6 306 1 316 277 40 79 chr15 28886762 28886852 -56808902 + L2 LINE L2 1471 1563 -1751 1071 206 0 18 chr15 28886852 28887071 -56808683 + MER20 DNA MER1_type 5 219 0 316 277 40 79 chr15 28887071 28887182 -56808572 + L2 LINE L2 1563 1664 -1650 1454 274 111 26 chr15 28887222 28887719 -56808035 + L2 LINE L2 2258 2796 -518 196 333 18 0 chr15 28887721 28887778 -56807976 + L2 LINE L2 3237 3294 -19 1582 183 61 26 chr15 28888128 28888505 -56807249 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr15 28888808 28888829 -56806925 + AT_rich Low_complexity Low_complexity 1 21 0 6759 112 27 16 chr15 28889030 28890089 -56805665 + MER11C LTR ERVK 1 1071 0 661 120 0 0 chr15 28890332 28890432 -56805322 - LTR12 LTR ERV1 0 714 615 329 178 44 33 chr15 28890435 28890525 -56805229 - LTR30 LTR ERV1 -80 642 552 403 179 28 117 chr15 28890525 28890704 -56805050 - LTR12 LTR ERV1 -429 285 123 235 250 0 0 chr15 28890708 28890760 -56804994 - LTR30 LTR ERV1 -670 52 1 313 374 0 17 chr15 28890760 28890875 -56804879 - MIR SINE MIR -66 142 30 258 227 0 0 chr15 28890932 28890998 -56804756 - L1ME4a LINE L1 -73 6048 5983 566 271 90 18 chr15 28891059 28891505 -56804249 - L1MEd LINE L1 -2701 3705 3228 737 275 108 30 chr15 28891525 28891689 -56804065 - L1MEd LINE L1 -3252 3154 3004 2492 61 0 0 chr15 28891689 28891985 -56803769 - AluY SINE Alu -15 296 1 737 275 108 30 chr15 28891985 28892423 -56803331 - L1MEd LINE L1 -3402 3004 2488 1721 158 25 76 chr15 28892423 28892524 -56803230 - MER7A DNA MER2_type -2692 346 241 2303 106 0 3 chr15 28892524 28892825 -56802929 - AluSq SINE Alu -13 300 1 1721 158 25 76 chr15 28892825 28893090 -56802664 - MER7A DNA MER2_type -2797 241 1 737 275 108 30 chr15 28893090 28893379 -56802375 - L1MEd LINE L1 -3918 2488 2223 502 265 105 56 chr15 28893541 28893700 -56802054 - L1MEd LINE L1 -4580 2007 1857 3502 129 9 5 chr15 28893700 28894258 -56801496 - L1PA15 LINE L1 0 6165 5606 2186 114 3 0 chr15 28894258 28894555 -56801199 - AluSx SINE Alu -1 311 14 502 265 105 56 chr15 28894555 28894992 -56800762 - L1MEd LINE L1 -4730 1857 1443 2515 69 0 0 chr15 28894992 28895297 -56800457 - AluY SINE Alu -6 305 1 2066 124 3 7 chr15 28895297 28895595 -56800159 - AluSx SINE Alu -15 297 1 502 265 105 56 chr15 28895595 28895719 -56800035 - L1MEd LINE L1 -5143 1444 1218 1953 92 48 4 chr15 28895977 28896249 -56799505 + AluSq SINE Alu 1 284 -29 2772 28 0 0 chr15 28896629 28896947 -56798807 + AluYb8 SINE Alu 1 318 0 1986 156 0 0 chr15 28896971 28897260 -56798494 + AluSx SINE Alu 1 289 -23 3496 238 124 17 chr15 28897352 28898580 -56797174 - L1M4 LINE L1 -1120 5026 3531 2082 131 0 3 chr15 28898580 28898885 -56796869 - AluSg SINE Alu -6 304 1 3496 238 124 17 chr15 28898885 28899432 -56796322 - L1M4 LINE L1 -2615 3531 3044 596 231 84 74 chr15 28899444 28899755 -56795999 - L1MEd LINE L1 -5311 1098 785 5986 8 0 0 chr15 28900354 28901058 -56794696 + L1HS LINE L1 5452 6155 0 294 241 55 35 chr15 28901074 28901219 -56794535 + L1MC4a LINE L1 5812 5959 -1849 26 0 0 0 chr15 28901331 28901357 -56794397 + AT_rich Low_complexity Low_complexity 1 26 0 1796 142 71 34 chr15 28902798 28903123 -56792631 - MER1B DNA MER1_type 0 337 1 332 231 259 21 chr15 28904221 28904364 -56791390 + MIR SINE MIR 85 261 -1 326 308 100 15 chr15 28904590 28904720 -56791034 - L2 LINE L2 0 3313 3173 1974 171 0 0 chr15 28905069 28905367 -56790387 - AluJb SINE Alu -14 298 1 365 280 93 18 chr15 28905374 28905599 -56790155 - L1MC/D LINE L1 -1993 5815 5574 261 194 69 28 chr15 28905612 28905684 -56790070 - MER5A DNA MER1_type -80 109 35 * 289 233 68 14 chr15 28905629 28905702 -56790052 + MER5A DNA MER1_type 113 189 0 226 297 237 0 chr15 28905943 28906061 -56789693 + MIR SINE MIR 47 192 -70 368 297 93 44 chr15 28906242 28906424 -56789330 - MIR SINE MIR -40 222 32 180 0 0 0 chr15 28907986 28908006 -56787748 + (T)n Simple_repeat Simple_repeat 1 20 0 31 68 0 0 chr15 28910265 28910324 -56785430 + AT_rich Low_complexity Low_complexity 1 59 0 6147 50 5 5 chr15 28910342 28911117 -56784637 - L1PA7 LINE L1 -7 6147 5373 * 26592 113 24 22 chr15 28911113 28915377 -56780377 - L1P LINE L1 -1865 4281 10 850 281 164 52 chr15 28915940 28916088 -56779666 + L2 LINE L2 2575 2705 -608 1686 193 23 0 chr15 28916088 28916389 -56779365 - AluJb SINE Alu -4 308 1 850 281 164 52 chr15 28916389 28916850 -56778904 + L2 LINE L2 2705 3270 -43 2139 128 0 0 chr15 28916850 28917148 -56778606 + AluSg SINE Alu 1 298 -12 850 281 164 52 chr15 28917148 28917192 -56778562 + L2 LINE L2 3270 3308 -5 23 54 0 0 chr15 28917420 28917457 -56778297 + AT_rich Low_complexity Low_complexity 1 37 0 458 17 17 0 chr15 28917911 28917970 -56777784 + (CA)n Simple_repeat Simple_repeat 1 60 0 1557 179 0 15 chr15 28917970 28918238 -56777516 - AluJo SINE Alu -21 291 28 23 54 0 0 chr15 28918289 28918326 -56777428 + AT_rich Low_complexity Low_complexity 1 37 0 499 350 79 35 chr15 28918492 28918832 -56776922 - L2 LINE L2 -41 3231 2877 30 27 0 0 chr15 28919119 28919156 -56776598 + AT_rich Low_complexity Low_complexity 1 37 0 216 311 126 11 chr15 28920331 28920514 -56775240 - L2 LINE L2 -809 2505 2302 22 0 0 0 chr15 28920597 28920619 -56775135 + AT_rich Low_complexity Low_complexity 1 22 0 263 338 101 0 chr15 28920869 28921017 -56774737 + MIR SINE MIR 100 262 0 1147 273 164 64 chr15 28921063 28921924 -56773830 - HAL1 LINE L1 0 2507 1561 1406 148 39 9 chr15 28921944 28922588 -56773166 - L1MA4 LINE L1 -5 6295 5567 1605 212 15 0 chr15 28922589 28922914 -56772840 + L1M2b LINE L1 1584 1913 -5296 518 259 150 11 chr15 28922915 28923201 -56772553 - HAL1 LINE L1 -1151 1356 1031 23 86 0 0 chr15 28923207 28923265 -56772489 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr15 28923398 28923419 -56772335 + AT_rich Low_complexity Low_complexity 1 21 0 1072 172 52 60 chr15 28923497 28923729 -56772025 - AluJb SINE Alu -2 310 81 543 247 114 14 chr15 28923753 28923972 -56771782 - L1MC5 LINE L1 -42 7919 7679 1173 254 53 25 chr15 28924177 28924450 -56771304 - L1ME LINE L1 -449 5721 5457 1877 154 3 19 chr15 28924450 28924761 -56770993 - AluJo SINE Alu -6 306 1 1173 254 53 25 chr15 28924761 28925066 -56770688 - L1ME LINE L1 -713 5457 5124 787 197 44 15 chr15 28925147 28925350 -56770404 - Charlie4 DNA MER1_type -9 1952 1744 679 216 27 6 chr15 28925592 28925811 -56769943 - Charlie4 DNA MER1_type -1659 302 45 506 193 0 44 chr15 28925821 28925935 -56769819 - LTR16C LTR ERVL -1 490 382 260 260 110 0 chr15 28926105 28926178 -56769576 - LTR16C LTR ERVL -378 113 33 3520 270 85 22 chr15 28926281 28927403 -56768351 - L1ME LINE L1 -1112 5034 3984 2019 147 3 0 chr15 28927403 28927703 -56768051 - AluSx SINE Alu -11 301 1 3520 270 85 22 chr15 28927703 28927821 -56767933 - L1ME LINE L1 -2162 3984 3875 2715 39 0 0 chr15 28927821 28928132 -56767622 - AluY SINE Alu 0 311 1 3520 270 85 22 chr15 28928132 28928607 -56767147 - L1ME LINE L1 -2271 3875 3210 231 162 0 0 chr15 28928602 28928639 -56767115 - L1MC1 LINE L1 -292 6041 6005 * 241 259 84 45 chr15 28928646 28928796 -56766958 + L2 LINE L2 2059 2259 -1055 1012 269 56 69 chr15 28928796 28929029 -56766725 + L2 LINE L2 2458 2684 -630 2106 128 0 0 chr15 28929029 28929318 -56766436 - AluSx SINE Alu -23 289 1 1012 269 56 69 chr15 28929318 28929533 -56766221 + L2 LINE L2 2684 2900 -414 2044 146 12 107 chr15 28930205 28930684 -56765070 - Tigger2a DNA MER2_type 0 434 1 824 304 119 32 chr15 28930890 28931642 -56764112 - L2 LINE L2 -1 3312 1968 576 312 91 85 chr15 28931786 28932502 -56763252 + L2 LINE L2 2550 3272 0 841 193 28 5 chr15 28933616 28933829 -56761925 + L1MA7 LINE L1 6074 6291 0 1615 199 3 0 chr15 28933923 28934240 -56761514 - L1 LINE L1 -2162 3984 3667 6651 82 7 6 chr15 28934240 28935227 -56760527 + L1PB1 LINE L1 5161 6148 -3 558 175 191 26 chr15 28935273 28935462 -56760292 - L1ME LINE L1 -3132 3014 2795 682 164 121 0 chr15 28936201 28936341 -56759413 + MER58C DNA MER1_type 59 215 0 735 256 49 49 chr15 28937044 28937290 -56758464 + MIR SINE MIR 10 255 -7 25 51 0 0 chr15 28938818 28938857 -56756897 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr15 28939122 28939147 -56756607 + AT_rich Low_complexity Low_complexity 1 25 0 2036 203 57 0 chr15 28939655 28940060 -56755694 - MSTA LTR MaLR 0 428 1 25 0 0 0 chr15 28940418 28940443 -56755311 + AT_rich Low_complexity Low_complexity 1 25 0 1430 148 33 60 chr15 28942659 28942990 -56752764 + MER33 DNA MER1_type 2 323 -1 424 240 16 156 chr15 28943542 28943913 -56751841 - L1MC4 LINE L1 -2 8040 7722 3298 35 0 0 chr15 28944729 28945123 -56750631 + L1PA4 LINE L1 5762 6155 0 270 227 84 59 chr15 28945234 28945353 -56750401 - L1ME3A LINE L1 -79 6091 5970 1642 251 118 14 chr15 28945413 28946185 -56749569 - L1ME3A LINE L1 -208 5962 5119 5237 189 110 19 chr15 28946211 28947484 -56748270 - L1MC4 LINE L1 0 8042 6654 308 204 31 82 chr15 28947432 28947530 -56748224 + L1MC4 LINE L1 6660 6752 -1290 * 549 251 40 54 chr15 28947593 28947743 -56748011 - L1MC4 LINE L1 -1343 6699 6551 2193 116 0 0 chr15 28947743 28948037 -56747717 - AluY SINE Alu -17 294 1 549 251 40 54 chr15 28948037 28948109 -56747645 - L1MC4 LINE L1 -1491 6551 6480 4513 164 43 52 chr15 28948135 28949044 -56746710 - MER54A LTR ERVL 0 901 1 41936 45 5 2 chr15 28949173 28954408 -56741346 - L1P LINE L1 -895 5251 1 251 254 107 49 chr15 28954491 28954613 -56741141 + L2 LINE L2 3182 3310 -3 719 172 57 0 chr15 28954665 28954787 -56740967 + FLAM_A SINE Alu 1 129 -4 448 289 14 50 chr15 28955377 28955595 -56740159 - L1ME LINE L1 -357 5764 5555 1643 161 3 67 chr15 28956877 28957193 -56738561 + AluJb SINE Alu 1 296 -16 7547 30 0 1 chr15 28957216 28958182 -56737572 + L1PA4 LINE L1 5185 6149 -6 812 263 154 24 chr15 28959477 28959937 -56735817 + L1MC/D LINE L1 5304 5823 -1985 5297 21 0 0 chr15 28959937 28960557 -56735197 + L1P LINE L1 3863 4482 -1664 571 169 0 0 chr15 28960713 28960802 -56734952 - AluJ/FLAM SINE Alu -223 89 1 526 216 96 112 chr15 28960930 28961091 -56734663 - L1MC4 LINE L1 -4 8038 7876 1954 148 3 3 chr15 28961091 28961395 -56734359 - AluSx SINE Alu -2 310 7 526 216 96 112 chr15 28961395 28961589 -56734165 - L1MC4 LINE L1 -166 7876 7689 21 36 0 0 chr15 28961826 28961854 -56733900 + AT_rich Low_complexity Low_complexity 1 28 0 223 300 0 0 chr15 28962225 28962285 -56733469 - L2 LINE L2 -4 3268 3209 201 248 209 57 chr15 28965228 28965333 -56730421 - L2 LINE L2 -11 3302 3182 822 281 163 17 chr15 28965685 28966090 -56729664 - L3 LINE CR1 -1 1576 1113 257 299 52 24 chr15 28966551 28966763 -56728991 - L3 LINE CR1 -870 707 417 436 182 159 0 chr15 28966990 28967122 -56728632 - L1MEc LINE L1 -4244 2152 2000 754 132 16 25 chr15 28967135 28967256 -56728498 + FLAM_C SINE Alu 1 120 -23 1387 247 22 43 chr15 28967302 28967763 -56727991 - L1M4 LINE L1 -1681 4465 4015 1614 95 32 0 chr15 28967778 28968030 -56727724 - L1MA2 LINE L1 -4 6300 6041 20356 153 34 36 chr15 28968169 28969961 -56725793 - L1MA2 LINE L1 -94 7629 5835 2047 115 13 13 chr15 28969961 28970265 -56725489 - AluY SINE Alu -7 304 1 20356 153 34 36 chr15 28970265 28972995 -56722759 - L1MA2 LINE L1 -1888 5835 3101 1932 123 27 3 chr15 28972995 28973288 -56722466 - AluSx SINE Alu -12 300 1 20356 153 34 36 chr15 28973288 28975319 -56720435 - L1MA2 LINE L1 -4622 3101 1051 307 130 0 0 chr15 28975319 28975365 -56720389 - U6 snRNA snRNA -61 46 1 20356 153 34 36 chr15 28975365 28976402 -56719352 - L1MA2 LINE L1 -6672 1051 13 1711 216 61 13 chr15 28976482 28976944 -56718810 - L1M4 LINE L1 -3218 2928 2445 1022 224 141 9 chr15 28976944 28977270 -56718484 - MLT1C LTR MaLR -93 374 6 2051 126 7 3 chr15 28978061 28978370 -56717384 - AluSx SINE Alu -2 310 1 186 303 204 0 chr15 28978906 28979038 -56716716 - L2 LINE L2 -37 3276 3118 639 39 0 0 chr15 28979241 28979319 -56716435 + (CTA)n Simple_repeat Simple_repeat 1 78 0 984 291 8 0 chr15 28979322 28979563 -56716191 - MIR SINE MIR -10 252 10 22 0 0 0 chr15 28979640 28979662 -56716092 + AT_rich Low_complexity Low_complexity 1 22 0 2088 122 0 0 chr15 28979840 28980154 -56715600 - AluSx SINE Alu 0 319 6 370 399 45 11 chr15 28980432 28980698 -56715056 - L2 LINE L2 -191 3081 2807 235 329 40 0 chr15 28980716 28980792 -56714962 + L2 LINE L2 2636 2714 -600 1834 28 0 0 chr15 28980967 28981178 -56714576 + AluYb8 SINE Alu 108 318 0 2286 118 0 0 chr15 28981210 28981516 -56714238 + AluSq SINE Alu 1 306 -7 1430 158 5 9 chr15 28981735 28981956 -56713798 + AluJo SINE Alu 1 220 -92 788 212 48 0 chr15 28982058 28982247 -56713507 + MER96B DNA MER1_type? 213 410 -7 325 305 6 67 chr15 28982255 28982419 -56713335 - ERVL LTR ERVL -1215 4549 4396 249 81 0 0 chr15 28982424 28982461 -56713293 - MER5B DNA MER1_type -1 177 141 525 131 12 0 chr15 28982462 28982546 -56713208 + MER5B DNA MER1_type 94 178 0 254 200 291 18 chr15 28982554 28982695 -56713059 - MER5A DNA MER1_type 0 189 4 450 345 32 53 chr15 28982727 28982801 -56712953 - ERVL LTR ERVL -4457 1197 1123 2128 113 7 3 chr15 28982801 28983102 -56712652 - AluSx SINE Alu -10 302 1 450 345 32 53 chr15 28983102 28983462 -56712292 - ERVL LTR ERVL -4531 1123 772 1490 148 19 12 chr15 28984391 28984648 -56711106 + L1PB3 LINE L1 5893 6151 -3 355 265 95 74 chr15 28988332 28988462 -56707292 - L1MC5 LINE L1 -47 7914 7788 1876 135 10 20 chr15 28988462 28988766 -56706988 - AluSq SINE Alu -12 301 1 355 265 95 74 chr15 28988766 28989098 -56706656 - L1MC5 LINE L1 -173 7788 7435 15723 88 10 0 chr15 28989098 28992081 -56703673 - L1PA7 LINE L1 -7 6147 3144 355 265 95 74 chr15 28992081 28992209 -56703545 - L1MC5 LINE L1 -526 7435 7311 578 250 22 49 chr15 28992359 28992583 -56703171 - L1MC5 LINE L1 -740 7221 7004 236 194 177 0 chr15 28992678 28992740 -56703014 - L1ME3A LINE L1 -5 6165 6093 * 448 248 31 108 chr15 28992723 28992963 -56702791 - L1MC5 LINE L1 -1008 6953 6743 1818 83 0 0 chr15 28992963 28993205 -56702549 - L1PA7 LINE L1 -8 6146 5905 448 248 31 108 chr15 28993205 28993287 -56702467 - L1MC5 LINE L1 -1218 6743 6656 317 250 21 42 chr15 28993492 28993588 -56702166 - L1MC5 LINE L1 -889 7072 6979 369 314 18 14 chr15 28993676 28993896 -56701858 - L1MC4 LINE L1 -937 7105 6885 2640 43 0 0 chr15 28994542 28994844 -56700910 + AluY SINE Alu 1 302 -9 1457 198 42 4 chr15 28994936 28995199 -56700555 + AluJo SINE Alu 5 277 -35 185 217 43 0 chr15 28996184 28996230 -56699524 - L2 LINE L2 -15 3257 3210 278 295 117 20 chr15 28996247 28996376 -56699378 - MIR SINE MIR -104 104 15 367 276 60 30 chr15 28996432 28996566 -56699188 - MIR3 SINE MIR -41 167 30 230 220 132 22 chr15 28996709 28996800 -56698954 - L2 LINE L2 -68 3245 3145 315 318 37 19 chr15 28996977 28997084 -56698670 + MIR SINE MIR 42 150 -58 312 364 109 0 chr15 28997094 28997259 -56698495 + MER5A DNA MER1_type 7 189 0 3992 134 30 4 chr15 28997438 28998115 -56697639 - L1MA4A LINE L1 -8 6295 5602 23 0 0 0 chr15 28998237 28998260 -56697494 + AT_rich Low_complexity Low_complexity 1 23 0 1907 132 0 14 chr15 28998672 28998952 -56696802 + AluSx SINE Alu 1 276 -36 309 68 0 0 chr15 28998952 28998996 -56696758 + (CA)n Simple_repeat Simple_repeat 1 44 0 2419 73 0 10 chr15 28999043 28999346 -56696408 - AluY SINE Alu -11 300 1 2500 61 3 0 chr15 28999358 28999655 -56696099 - AluY SINE Alu -13 298 1 237 325 99 8 chr15 29000308 29000426 -56695328 - MIR SINE MIR -87 121 21 1629 189 0 24 chr15 29003037 29003334 -56692420 - AluJo SINE Alu -12 300 11 189 196 0 107 chr15 29003712 29003768 -56691986 - L2 LINE L2 -1 3271 3222 * 443 335 80 24 chr15 29003749 29003961 -56691793 - MIR SINE MIR -26 236 13 257 181 193 12 chr15 29004358 29004441 -56691313 - MIR SINE MIR -95 167 70 * 1161 244 133 37 chr15 29004421 29004803 -56690951 + L2 LINE L2 2397 2815 -499 1038 268 100 6 chr15 29004816 29005145 -56690609 + L2 LINE L2 2953 3312 -1 684 202 0 8 chr15 29005154 29005278 -56690476 + FLAM_C SINE Alu 5 127 -16 257 56 481 0 chr15 29005290 29005344 -56690410 + MADE1 DNA Mariner 1 80 0 308 304 20 20 chr15 29006780 29006882 -56688872 - MIR SINE MIR -61 147 46 719 247 68 44 chr15 29007026 29007322 -56688432 - L1ME4a LINE L1 -280 5841 5539 30 0 0 0 chr15 29007365 29007395 -56688359 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr15 29007997 29008020 -56687734 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr15 29008147 29008181 -56687573 + AT_rich Low_complexity Low_complexity 1 34 0 196 276 46 35 chr15 29009131 29009218 -56686536 + MIR SINE MIR 25 112 -150 2204 119 0 0 chr15 29009839 29010134 -56685620 - AluSq SINE Alu -16 297 3 323 314 90 13 chr15 29010580 29010736 -56685018 - MIR SINE MIR -29 233 66 239 320 66 8 chr15 29010925 29011047 -56684707 - MER5B DNA MER1_type -29 149 21 2116 132 7 0 chr15 29011610 29011920 -56683834 - AluSx SINE Alu 0 312 1 660 264 90 0 chr15 29012237 29012438 -56683316 + MIR SINE MIR 44 262 0 21 0 0 0 chr15 29013095 29013116 -56682638 + AT_rich Low_complexity Low_complexity 1 21 0 2249 123 0 0 chr15 29013537 29013838 -56681916 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr15 29014059 29014095 -56681659 + AT_rich Low_complexity Low_complexity 1 36 0 268 292 130 21 chr15 29015603 29015795 -56679959 + L1MC4a LINE L1 5689 5901 -1907 7070 194 33 39 chr15 29015964 29018501 -56677253 - L1M2c LINE L1 -4519 2270 2 1081 268 134 38 chr15 29018491 29019464 -56676290 - L1MC4 LINE L1 -873 7020 5844 * 351 306 0 0 chr15 29020965 29021050 -56674704 + L2 LINE L2 3186 3270 -2 209 189 0 0 chr15 29022288 29022325 -56673429 + L3 LINE CR1 1538 1574 -3 23 0 0 0 chr15 29024061 29024084 -56671670 + AT_rich Low_complexity Low_complexity 1 23 0 3575 166 112 59 chr15 29025278 29025777 -56669977 - L1MC4 LINE L1 -3 8039 7568 2335 104 0 7 chr15 29025777 29026085 -56669669 - AluSx SINE Alu -6 306 1 3575 166 112 59 chr15 29026085 29026587 -56669167 - L1MC4 LINE L1 -474 7568 6985 994 276 117 30 chr15 29028023 29028519 -56667235 - L2 LINE L2 -163 3150 2587 2407 153 19 0 chr15 29028519 29028937 -56666817 + L1MB5 LINE L1 5749 6174 0 994 276 117 30 chr15 29028937 29029074 -56666680 - L2 LINE L2 -726 2587 2463 1387 210 31 14 chr15 29030864 29031150 -56664604 + AluJo SINE Alu 1 291 -21 1144 178 5 0 chr15 29031164 29031349 -56664405 + MER5A DNA MER1_type 1 186 -3 247 254 153 0 chr15 29031659 29031777 -56663977 - L1ME4a LINE L1 -21 6100 5965 2824 220 99 59 chr15 29031900 29032314 -56663440 - L1MC5 LINE L1 -46 7915 7519 198 0 0 0 chr15 29032314 29032336 -56663418 + (TC)n Simple_repeat Simple_repeat 2 23 0 2824 220 99 59 chr15 29032336 29033138 -56662616 - L1MC5 LINE L1 -442 7519 6650 410 296 87 15 chr15 29033242 29033270 -56662484 - L1MC4 LINE L1 -457 5664 5639 2537 60 0 0 chr15 29033270 29033569 -56662185 + AluY SINE Alu 1 299 -12 410 296 87 15 chr15 29033569 29033736 -56662018 - L1MC4 LINE L1 -482 5639 5455 201 289 0 0 chr15 29034095 29034140 -56661614 + polypyrimidine Low_complexity Low_complexity 3 47 0 23 0 0 0 chr15 29034395 29034418 -56661336 + AT_rich Low_complexity Low_complexity 1 23 0 60 64 0 0 chr15 29034862 29034971 -56660783 + AT_rich Low_complexity Low_complexity 1 109 0 21 57 0 0 chr15 29035740 29035775 -56659979 + AT_rich Low_complexity Low_complexity 1 35 0 1839 172 7 3 chr15 29035885 29036182 -56659572 - AluJb SINE Alu -14 298 1 23 0 0 0 chr15 29036376 29036399 -56659355 + AT_rich Low_complexity Low_complexity 1 23 0 349 293 45 19 chr15 29036630 29036787 -56658967 + L1ME LINE L1 5524 5684 -437 185 0 40 0 chr15 29036865 29036890 -56658864 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1692 148 25 14 chr15 29036896 29037174 -56658580 - AluJb SINE Alu -30 282 2 2381 84 0 3 chr15 29038659 29038955 -56656799 + AluSp SINE Alu 1 295 -18 1638 156 47 14 chr15 29039456 29039731 -56656023 + AluJb SINE Alu 1 284 -28 1082 179 72 0 chr15 29040249 29040444 -56655310 + MER3 DNA MER1_type 1 209 0 22 35 0 0 chr15 29041237 29041266 -56654488 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr15 29042376 29042401 -56653353 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1984 139 0 0 chr15 29044113 29044400 -56651354 - AluJb SINE Alu -19 293 7 371 180 22 79 chr15 29044439 29044528 -56651226 - MIR SINE MIR -79 183 100 23 33 0 0 chr15 29044895 29044925 -56650829 + AT_rich Low_complexity Low_complexity 1 30 0 1408 204 37 20 chr15 29045605 29045899 -56649855 + AluJo SINE Alu 1 299 -13 2332 89 0 0 chr15 29046502 29046795 -56648959 + AluSg SINE Alu 2 294 -16 180 310 69 35 chr15 29047174 29047261 -56648493 - L3b LINE CR1 -38 1545 1456 5669 119 67 5 chr15 29048055 29049187 -56646567 - L1PB2 LINE L1 -3 6148 4954 715 201 0 8 chr15 29050016 29050150 -56645604 - FLAM_C SINE Alu 0 133 1 449 154 0 39 chr15 29051542 29051620 -56644134 - Tigger5 DNA MER2_type 0 2323 2249 358 203 40 0 chr15 29051618 29051692 -56644062 + Tigger5 DNA MER2_type 2242 2318 -5 * 492 156 26 0 chr15 29051693 29051770 -56643984 - Tigger5 DNA MER2_type -2244 79 1 299 278 44 0 chr15 29053596 29053686 -56642068 - L2 LINE L2 0 3272 3179 2514 243 89 29 chr15 29053941 29054287 -56641467 + L1MEc LINE L1 32 356 -6040 2564 110 6 3 chr15 29054287 29054650 -56641104 - THE1B LTR MaLR 0 364 1 2514 243 89 29 chr15 29054650 29054779 -56640975 + L1MEc LINE L1 356 476 -5920 1546 158 73 43 chr15 29054779 29054976 -56640778 + MER44D DNA MER2_type 1 191 -2300 2210 115 0 0 chr15 29054976 29055263 -56640491 - AluSx SINE Alu -25 287 1 1546 158 73 43 chr15 29055263 29055394 -56640360 + MER44D DNA MER2_type 191 609 0 2514 243 89 29 chr15 29055394 29055752 -56640002 + L1MEc LINE L1 476 916 -5480 2490 247 119 22 chr15 29055753 29056644 -56639110 + L1MEc LINE L1 940 1938 -4458 1467 123 5 5 chr15 29056644 29056848 -56638906 + AluSq SINE Alu 1 204 -109 2490 247 119 22 chr15 29056848 29056947 -56638807 + L1MEc LINE L1 1938 2026 -4370 4439 219 70 107 chr15 29056979 29059078 -56636676 + L1M3e LINE L1 460 2482 -5007 1182 208 59 0 chr15 29059080 29059335 -56636419 + L1MA7 LINE L1 5621 5890 -401 19543 154 32 8 chr15 29059339 29063468 -56632286 + L1MA1 LINE L1 270 4297 -3424 2198 133 0 0 chr15 29063468 29063770 -56631984 - AluSx SINE Alu -10 302 1 19543 154 32 8 chr15 29063770 29063972 -56631782 + L1MA1 LINE L1 4297 4493 -3228 2169 98 6 46 chr15 29063972 29064261 -56631493 + AluSq SINE Alu 1 277 -36 216 0 0 0 chr15 29064261 29064285 -56631469 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2169 98 6 46 chr15 29064285 29064321 -56631433 + AluSq SINE Alu 277 313 0 19543 154 32 8 chr15 29064321 29065015 -56630739 + L1MA1 LINE L1 4493 5169 -2552 201 39 0 0 chr15 29065015 29065041 -56630713 + (CA)n Simple_repeat Simple_repeat 1 26 0 19543 154 32 8 chr15 29065041 29067272 -56628482 + L1MA1 LINE L1 5169 7715 -6 3433 209 90 37 chr15 29067280 29068582 -56627172 + L1M3e LINE L1 3065 4429 -3136 * 8541 134 76 23 chr15 29068580 29068839 -56626915 - L1 LINE L1 -3433 4132 3888 2204 117 0 0 chr15 29068839 29069130 -56626624 - AluSx SINE Alu -21 291 1 8541 134 76 23 chr15 29069130 29069176 -56626578 - L1 LINE L1 -3677 3888 3846 1509 164 160 11 chr15 29069176 29069439 -56626315 - AluJb SINE Alu 0 302 1 8541 134 76 23 chr15 29069439 29070833 -56624921 - L1 LINE L1 -3719 3846 2309 1837 170 13 0 chr15 29070833 29071133 -56624621 + AluSx SINE Alu 1 304 -8 8541 134 76 23 chr15 29071133 29071419 -56624335 - L1 LINE L1 -5256 2309 2040 2508 142 6 3 chr15 29071419 29071778 -56623976 + THE1B LTR MaLR 1 360 -4 1529 129 19 101 chr15 29071800 29072172 -56623582 - MER4A LTR ERV1 -2 662 263 569 153 10 10 chr15 29072172 29072270 -56623484 - MER4A LTR ERV1 -566 98 1 379 129 0 141 chr15 29072273 29072306 -56623448 + THE1B-int LTR MaLR 16 31 -1549 2411 78 0 13 chr15 29072306 29072614 -56623140 + AluY SINE Alu 1 304 -7 379 129 0 141 chr15 29072614 29072665 -56623089 + THE1B-int LTR MaLR 31 88 -1492 1983 113 158 75 chr15 29072671 29073044 -56622710 + MER4A LTR ERV1 261 664 0 2658 73 71 73 chr15 29073047 29073484 -56622270 + MER4A-int LTR ERV1 1 436 -6162 1295 107 42 32 chr15 29073483 29073699 -56622055 + MER4A-int LTR ERV1 895 1112 -5486 * 387 0 0 0 chr15 29073700 29073743 -56622011 + (TG)n Simple_repeat Simple_repeat 2 44 0 11461 124 91 67 chr15 29073743 29074266 -56621488 + MER4A-int LTR ERV1 696 1205 -5322 2387 77 3 10 chr15 29074266 29074579 -56621175 + AluY SINE Alu 1 311 0 11461 124 91 67 chr15 29074579 29078049 -56617705 + MER4A-int LTR ERV1 1205 5912 -615 44064 29 21 1 chr15 29078049 29084079 -56611675 + L1HS LINE L1 2 6152 -3 270 21 64 0 chr15 29084083 29084130 -56611624 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4118 106 70 21 chr15 29084158 29084828 -56610926 + MER4A-int LTR ERV1 5896 6598 0 511 135 31 10 chr15 29084830 29084926 -56610828 + MER4A LTR ERV1 1 98 -566 1652 146 5 75 chr15 29084926 29085295 -56610459 + MER4A LTR ERV1 263 664 0 3021 75 40 0 chr15 29085295 29085695 -56610059 + THE1B-int LTR MaLR 1165 1580 0 2675 95 11 48 chr15 29085695 29086073 -56609681 + THE1B LTR MaLR 1 364 0 12128 152 38 7 chr15 29086073 29088048 -56607706 - L1M1 LINE L1 -5521 2044 10 592 182 76 72 chr15 29088076 29088312 -56607442 + L1MEc LINE L1 2039 2275 -4121 641 292 99 5 chr15 29088355 29088557 -56607197 - MER58A DNA MER1_type -3 221 1 701 227 34 34 chr15 29088557 29088764 -56606990 + L1MEc LINE L1 2268 2474 -3922 814 273 84 4 chr15 29089022 29089249 -56606505 + MIR SINE MIR 3 247 -15 1397 179 48 96 chr15 29089437 29089790 -56605964 + MER58B DNA MER1_type 1 336 -5 1763 270 33 36 chr15 29089873 29090448 -56605306 - HERV16 LTR ERVL -4417 579 7 725 153 90 23 chr15 29090450 29090627 -56605127 + MER53 DNA DNA 1 189 0 1442 251 78 0 chr15 29090632 29091019 -56604735 - LTR16A LTR ERVL -5 445 29 242 305 79 43 chr15 29091486 29091650 -56604104 + MIR3 SINE MIR 38 207 -1 1431 150 4 11 chr15 29092193 29092460 -56603294 + L1PA5 LINE L1 5716 5980 -174 3920 50 15 0 chr15 29093439 29093900 -56601854 + L1PA5 LINE L1 5687 6154 0 249 247 52 72 chr15 29093999 29094096 -56601658 - MIR SINE MIR -86 176 82 183 80 0 0 chr15 29095265 29095290 -56600464 + (A)n Simple_repeat Simple_repeat 1 25 0 602 222 77 0 chr15 29095795 29095912 -56599842 - FLAM_A SINE Alu -6 127 2 937 233 5 20 chr15 29096448 29096650 -56599104 - MER58A DNA MER1_type 0 224 26 769 131 54 31 chr15 29096894 29097024 -56598730 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr15 29097040 29097061 -56598693 + (A)n Simple_repeat Simple_repeat 1 21 0 262 289 141 15 chr15 29097410 29097545 -56598209 - MIR3 SINE MIR -45 163 12 419 265 43 8 chr15 29098220 29098337 -56597417 - MER5A DNA MER1_type -60 129 9 353 291 135 14 chr15 29098516 29098664 -56597090 - MIR3 SINE MIR -11 197 32 413 275 84 24 chr15 29099866 29100033 -56595721 - MIR3 SINE MIR -11 197 21 203 207 256 0 chr15 29100540 29100622 -56595132 - L2 LINE L2 0 3272 3170 252 242 0 32 chr15 29103144 29103206 -56592548 + MIR3 SINE MIR 124 183 -25 663 272 77 5 chr15 29104219 29104414 -56591340 + MIR SINE MIR 19 227 -35 539 218 17 17 chr15 29104971 29105150 -56590604 + GA-rich Low_complexity Low_complexity 2 180 0 235 173 96 19 chr15 29105641 29105693 -56590061 + L2 LINE L2 3258 3313 0 1541 194 59 19 chr15 29106069 29106319 -56589435 + LTR32 LTR ERVL 15 282 -189 2634 129 58 31 chr15 29106319 29106736 -56589018 + MSTA LTR MaLR 1 428 0 1541 194 59 19 chr15 29106736 29106809 -56588945 + LTR32 LTR ERVL 282 351 -120 839 162 13 7 chr15 29106865 29107019 -56588735 + LTR32 LTR ERVL 317 471 0 2164 103 0 0 chr15 29107797 29108108 -56587646 - AluSx SINE Alu 0 311 1 255 233 23 75 chr15 29108276 29108409 -56587345 - MIR SINE MIR -57 205 80 1148 307 56 18 chr15 29108671 29109173 -56586581 + L1MEc LINE L1 200 720 -5676 2060 201 37 9 chr15 29109194 29109626 -56586128 + L1M4 LINE L1 3828 4271 -1875 3311 104 123 8 chr15 29109776 29110248 -56585506 - MER1A DNA MER1_type 0 527 2 187 349 0 35 chr15 29112029 29112115 -56583639 + L2 LINE L2 2238 2320 -994 1145 206 62 8 chr15 29112165 29112408 -56583346 - MIR SINE MIR 0 262 7 260 65 43 0 chr15 29113086 29113132 -56582622 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 201 231 144 48 chr15 29113132 29113236 -56582518 - L2 LINE L2 -14 3299 3186 323 316 29 43 chr15 29113239 29113378 -56582376 - MIR3 SINE MIR -21 187 51 366 258 11 11 chr15 29113710 29113799 -56581955 + MIR SINE MIR 14 102 -160 365 222 111 40 chr15 29113800 29113926 -56581828 - L2 LINE L2 0 3272 3138 210 321 110 0 chr15 29114274 29114383 -56581371 - L2 LINE L2 -247 3066 2946 225 226 38 0 chr15 29114435 29114488 -56581266 - L2 LINE L2 -371 2942 2888 * 312 274 60 34 chr15 29114486 29114603 -56581151 + MIR SINE MIR 122 241 -21 223 296 22 82 chr15 29114680 29114815 -56580939 + L2 LINE L2 2911 3037 -235 189 236 283 19 chr15 29115112 29115218 -56580536 + L2 LINE L2 3177 3310 -3 550 319 119 45 chr15 29115221 29115935 -56579819 + L2 LINE L2 2029 2795 -519 1095 272 105 29 chr15 29116411 29117022 -56578732 + L2 LINE L2 2640 3295 -18 21 0 0 0 chr15 29118687 29118708 -56577046 + AT_rich Low_complexity Low_complexity 1 21 0 1971 70 0 33 chr15 29119684 29119955 -56575799 - AluY SINE Alu -1 310 49 400 276 35 41 chr15 29121376 29121521 -56574233 - MER5A DNA MER1_type -27 162 19 805 240 103 10 chr15 29122101 29122305 -56573449 + MER45C DNA AcHobo 1 223 -730 1072 170 174 30 chr15 29122424 29122659 -56573095 + MER45C DNA AcHobo 677 945 -8 6487 123 62 50 chr15 29125127 29126343 -56569411 + Tigger3b DNA MER2_type 1 1231 0 217 366 0 0 chr15 29126584 29126655 -56569099 + MIR SINE MIR 71 141 -121 1584 195 33 3 chr15 29127410 29127712 -56568042 + AluJb SINE Alu 1 311 -1 512 300 9 23 chr15 29127826 29127991 -56567763 - MIR SINE MIR -65 143 10 198 200 50 0 chr15 29128605 29128645 -56567109 - MIR3 SINE MIR -15 193 152 197 223 27 107 chr15 29128702 29128814 -56566940 + L2 LINE L2 2839 2941 -372 427 181 14 0 chr15 29128937 29129008 -56566746 + Tigger2 DNA MER2_type 1 72 -2646 248 246 105 0 chr15 29129008 29129065 -56566689 - MER2 DNA MER2_type -1 344 282 * 996 214 0 6 chr15 29129042 29129220 -56566534 - MER8 DNA MER2_type -62 177 1 1151 192 57 7 chr15 29129318 29129649 -56566105 + MSTD LTR MaLR 1 393 -3 2458 138 53 15 chr15 29130109 29130454 -56565300 + MSTC LTR MaLR 1 366 -62 1999 126 0 7 chr15 29130454 29130748 -56565006 + AluSx SINE Alu 1 292 -20 2458 138 53 15 chr15 29130748 29130814 -56564940 + MSTC LTR MaLR 366 428 0 2045 136 0 10 chr15 29131418 29131728 -56564026 - AluSx SINE Alu -4 308 2 225 200 18 73 chr15 29132084 29132139 -56563615 + MIR3 SINE MIR 117 168 -40 239 282 39 39 chr15 29132208 29132286 -56563468 - MIR SINE MIR -74 134 57 1696 186 0 0 chr15 29132302 29132597 -56563157 - AluJb SINE Alu -9 303 9 1670 170 70 28 chr15 29133446 29133846 -56561908 + MER95 LTR ERV 5 421 -10 212 250 11 114 chr15 29134185 29134273 -56561481 + L2 LINE L2 3220 3298 -15 189 305 102 55 chr15 29135321 29135449 -56560305 + MIR SINE MIR 73 206 -56 1266 158 134 4 chr15 29135548 29135802 -56559952 - AluJb SINE Alu -19 293 7 317 333 15 56 chr15 29136551 29136746 -56559008 + L1M4 LINE L1 5019 5205 -941 632 276 76 60 chr15 29136761 29136891 -56558863 + MIR SINE MIR 9 135 -127 207 100 0 0 chr15 29136891 29136921 -56558833 + (TAA)n Simple_repeat Simple_repeat 2 31 0 632 276 76 60 chr15 29136921 29137040 -56558714 + MIR SINE MIR 135 262 0 334 306 46 53 chr15 29137042 29137247 -56558507 + L1M4 LINE L1 5219 5420 -701 1035 211 23 20 chr15 29137589 29137892 -56557862 + L1MEc LINE L1 768 1071 -5325 939 178 0 0 chr15 29137895 29138052 -56557702 + FRAM SINE Alu 1 157 -19 1167 262 88 25 chr15 29138070 29138624 -56557130 + L1MEc LINE L1 1072 1660 -4736 277 317 140 49 chr15 29138692 29138935 -56556819 + L2 LINE L2 3000 3264 -8 1752 214 72 123 chr15 29139235 29139925 -56555829 + L2 LINE L2 2227 2842 -471 2123 122 0 0 chr15 29139925 29140236 -56555518 - AluSx SINE Alu -1 311 1 1752 214 72 123 chr15 29140236 29140485 -56555269 + L2 LINE L2 2842 3102 -211 1036 156 0 11 chr15 29140487 29140666 -56555088 - AluSg/x SINE Alu -9 301 125 784 239 5 25 chr15 29140666 29140863 -56554891 + L2 LINE L2 3121 3313 0 11640 219 20 29 chr15 29141630 29142436 -56553318 - HERV17 LTR ERV1 -4889 3737 2925 2334 78 0 10 chr15 29142436 29142744 -56553010 - AluY SINE Alu -6 305 1 11640 219 20 29 chr15 29142744 29145073 -56550681 - HERV17 LTR ERV1 -5701 2925 1 670 181 0 112 chr15 29145118 29145306 -56550448 - LTR12 LTR ERV1 -262 452 286 716 313 41 16 chr15 29145594 29145840 -56549914 - MIR SINE MIR 0 262 11 657 98 0 107 chr15 29146116 29146215 -56549539 + MER41B LTR ERV1 1 86 -549 2103 104 0 3 chr15 29146215 29146513 -56549241 - AluSc SINE Alu -12 297 1 657 98 0 107 chr15 29146513 29146535 -56549219 + MER41B LTR ERV1 86 109 -526 2260 105 0 3 chr15 29147122 29147435 -56548319 + AluSx SINE Alu 1 312 0 3020 128 21 6 chr15 29147436 29147903 -56547851 + MER41B LTR ERV1 162 635 0 360 375 63 30 chr15 29147908 29148383 -56547371 + L2 LINE L2 2487 2977 -337 189 0 0 0 chr15 29149131 29149152 -56546602 + (TGG)n Simple_repeat Simple_repeat 3 23 0 180 0 0 0 chr15 29149212 29149232 -56546522 + (T)n Simple_repeat Simple_repeat 1 20 0 2992 199 19 72 chr15 29149514 29150241 -56545513 - LTR8 LTR ERV1 -2 689 1 1820 151 12 112 chr15 29150515 29150918 -56544836 + MLT1A1 LTR MaLR 1 363 -2 788 270 75 8 chr15 29150941 29151182 -56544572 - MIR SINE MIR -3 259 3 793 138 0 0 chr15 29151640 29151756 -56543998 + FLAM_C SINE Alu 5 120 -13 2178 90 0 13 chr15 29152904 29153204 -56542550 + AluY SINE Alu 1 296 -15 1710 201 15 18 chr15 29153243 29153581 -56542173 - MER58B DNA MER1_type -2 339 3 503 328 43 8 chr15 29153688 29153944 -56541810 - MARNA DNA Mariner -9 577 313 336 179 13 26 chr15 29154228 29154306 -56541448 + Charlie8 DNA MER1_type 82 158 -2259 1493 182 26 29 chr15 29154313 29154626 -56541128 + AluJo SINE Alu 1 312 0 201 94 0 0 chr15 29154630 29154662 -56541092 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 255 214 43 29 chr15 29154849 29154919 -56540835 - L1MC4a LINE L1 -1654 6154 6084 * 1505 232 107 17 chr15 29154909 29155413 -56540341 - L1MC4a LINE L1 -287 6004 5451 1503 77 10 0 chr15 29155414 29155608 -56540146 + MER30 DNA MER1_type 2 197 -33 253 217 103 98 chr15 29155623 29155826 -56539928 - L1MC4a LINE L1 -2350 5458 5255 2107 117 3 0 chr15 29155856 29156163 -56539591 - AluSx SINE Alu -4 308 1 330 283 115 68 chr15 29156166 29157453 -56538301 - L1MC4a LINE L1 -909 5237 3890 532 244 50 0 chr15 29158682 29158801 -56536953 + MER5B DNA MER1_type 37 161 -17 528 259 168 0 chr15 29158807 29158950 -56536804 + MER5A DNA MER1_type 9 175 -14 256 311 41 87 chr15 29158971 29159167 -56536587 + MER5A DNA MER1_type 2 188 -1 279 235 109 34 chr15 29160650 29160769 -56534985 - MIR3 SINE MIR -6 202 75 288 290 86 0 chr15 29161998 29162091 -56533663 + MIR3 SINE MIR 2 102 -106 2511 138 41 5 chr15 29162694 29163107 -56532647 + MSTA LTR MaLR 1 428 0 188 338 27 0 chr15 29163279 29163353 -56532401 + L3 LINE CR1 1097 1172 -405 180 320 120 24 chr15 29163467 29163592 -56532162 + L3 LINE CR1 1257 1393 -184 * 359 260 20 30 chr15 29163578 29163678 -56532076 - L2 LINE L2 -1 3271 3173 240 111 0 0 chr15 29163866 29163902 -56531852 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2595 183 64 21 chr15 29163956 29164471 -56531283 + MER21A LTR ERV1 1 537 -394 1495 98 15 0 chr15 29164470 29164674 -56531080 + MER21A LTR ERV1 725 931 0 * 354 297 297 0 chr15 29165387 29165579 -56530175 + MIR SINE MIR 14 262 0 22 0 0 0 chr15 29166015 29166037 -56529717 + AT_rich Low_complexity Low_complexity 1 22 0 786 276 75 58 chr15 29166606 29167172 -56528582 - L2 LINE L2 0 3313 2736 993 221 106 39 chr15 29167812 29168124 -56527630 - LTR16A LTR ERVL 0 450 118 416 226 65 71 chr15 29168500 29168655 -56527099 - MIR SINE MIR -25 237 84 420 333 41 11 chr15 29170022 29170289 -56525465 + HAL1 LINE L1 1401 1675 -832 401 225 45 157 chr15 29170781 29171048 -56524706 + L1MCa LINE L1 1839 2075 -4351 888 320 69 17 chr15 29171941 29172422 -56523332 + L2 LINE L2 1790 2295 -1019 429 316 89 61 chr15 29172769 29173209 -56522545 + L2 LINE L2 2820 3271 -1 1617 206 104 43 chr15 29173799 29174289 -56521465 - MLT2B1 LTR ERVL 0 520 1 387 60 0 0 chr15 29174349 29174399 -56521355 + (CA)n Simple_repeat Simple_repeat 2 51 0 2230 229 52 62 chr15 29174417 29175164 -56520590 + MER20B DNA MER1_type 5 744 -39 240 204 0 0 chr15 29175207 29175251 -56520503 + MER20B DNA MER1_type 739 782 -1 594 152 105 0 chr15 29175355 29175460 -56520294 + AluSc SINE Alu 189 304 -5 189 178 0 0 chr15 29175465 29175510 -56520244 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 287 322 35 43 chr15 29175920 29176035 -56519719 + MIR3 SINE MIR 8 121 -87 327 291 12 0 chr15 29176103 29176189 -56519565 + MER69A DNA AcHobo 6 92 -85 2063 148 37 20 chr15 29176811 29177082 -56518672 + MER47A DNA MER2_type 9 289 -2034 2392 81 0 0 chr15 29177082 29177389 -56518365 - AluSc SINE Alu -2 307 1 2063 148 37 20 chr15 29177389 29177469 -56518285 + MER47A DNA MER2_type 289 366 0 501 162 71 20 chr15 29177758 29177857 -56517897 - FLAM_A SINE Alu -21 121 18 239 329 0 0 chr15 29179370 29179440 -56516314 - MIR SINE MIR -119 143 74 185 260 40 0 chr15 29180162 29180212 -56515542 - MIR SINE MIR -85 123 72 22 35 0 0 chr15 29180968 29180997 -56514757 + AT_rich Low_complexity Low_complexity 1 29 0 1423 177 72 10 chr15 29181921 29182226 -56513528 + MER33 DNA MER1_type 1 324 0 260 283 163 0 chr15 29182871 29182963 -56512791 + MIR SINE MIR 122 228 -34 421 331 74 0 chr15 29182995 29183143 -56512611 - MIR SINE MIR -56 206 48 325 345 72 36 chr15 29184605 29184799 -56510955 + MIR SINE MIR 31 231 -31 415 244 112 16 chr15 29185054 29185202 -56510552 + MIR3 SINE MIR 19 172 -43 1296 253 62 50 chr15 29185465 29185539 -56510215 - MLT1J LTR MaLR -4 507 435 2191 85 7 26 chr15 29185539 29185845 -56509909 + AluY SINE Alu 2 301 -10 1296 253 62 50 chr15 29185845 29186174 -56509580 - MLT1J LTR MaLR -76 435 99 826 144 0 8 chr15 29186218 29186350 -56509404 - FLAM_C SINE Alu -2 131 1 891 138 7 0 chr15 29186601 29186739 -56509015 - FLAM_C SINE Alu -4 139 1 482 289 53 59 chr15 29186751 29186938 -56508816 - MIR3 SINE MIR -3 205 20 386 202 0 175 chr15 29187309 29187492 -56508262 - L2 LINE L2 0 3313 3163 447 323 131 17 chr15 29187682 29188094 -56507660 - L2 LINE L2 -387 2927 2469 230 300 43 0 chr15 29188799 29188869 -56506885 + MIR SINE MIR 41 113 -149 * 360 302 133 7 chr15 29188842 29188985 -56506769 - MIR SINE MIR -35 173 13 2236 101 0 0 chr15 29189135 29189432 -56506322 - AluSx SINE Alu -15 297 1 429 260 68 45 chr15 29191031 29191208 -56504546 - MIR3 SINE MIR -3 205 25 673 229 41 88 chr15 29191406 29191761 -56503993 - L1MDb LINE L1 -5374 1156 794 327 305 63 63 chr15 29192093 29192424 -56503330 - L1MDb LINE L1 -6191 349 19 281 350 137 0 chr15 29192605 29192722 -56503032 - L2 LINE L2 -6 3266 3134 1570 203 60 14 chr15 29193247 29193596 -56502158 - MLT1A1 LTR MaLR 0 365 1 335 265 129 26 chr15 29193805 29193969 -56501785 - MIR3 SINE MIR -73 135 1 181 214 125 0 chr15 29194640 29194696 -56501058 - MIR SINE MIR -14 248 186 207 306 0 0 chr15 29194697 29194746 -56501008 + MIR SINE MIR 212 260 -2 181 143 0 0 chr15 29195515 29195543 -56500211 + L2 LINE L2 2735 2762 -552 355 135 233 135 chr15 29196724 29196788 -56498966 - MLT1E2 LTR MaLR 0 626 570 2113 119 0 0 chr15 29196788 29197082 -56498672 + AluSx SINE Alu 7 300 -12 355 135 233 135 chr15 29197082 29197150 -56498604 - MLT1E2 LTR MaLR -56 570 481 2389 84 0 0 chr15 29197443 29197752 -56498002 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr15 29197846 29197868 -56497886 + AT_rich Low_complexity Low_complexity 1 22 0 250 241 89 0 chr15 29198049 29198128 -56497626 - L1ME4a LINE L1 -40 6081 5996 403 340 85 10 chr15 29199739 29199939 -56495815 - L2 LINE L2 -64 3208 2994 402 268 38 81 chr15 29202673 29202882 -56492872 + L2 LINE L2 2963 3162 -110 302 246 117 95 chr15 29204027 29204206 -56491548 - MIR3 SINE MIR -9 199 17 468 0 0 0 chr15 29204772 29204824 -56490930 + (TG)n Simple_repeat Simple_repeat 2 53 0 275 278 225 7 chr15 29205355 29205506 -56490248 + MIR3 SINE MIR 19 202 -6 335 280 45 53 chr15 29207054 29207186 -56488568 - L2 LINE L2 -8 3264 3134 28 0 0 0 chr15 29207477 29207505 -56488249 + AT_rich Low_complexity Low_complexity 1 28 0 5501 80 20 33 chr15 29207643 29209107 -56486647 - SVA Other Other -518 1046 7 1345 84 6 0 chr15 29209377 29209555 -56486199 - L1PB1 LINE L1 -6 6145 5967 274 272 228 0 chr15 29209881 29209995 -56485759 - MER91A DNA MER1_type 0 196 57 188 280 19 75 chr15 29210497 29210604 -56485150 + L2 LINE L2 1726 1826 -1488 192 40 0 0 chr15 29210604 29210629 -56485125 + (ACTG)n Simple_repeat Simple_repeat 3 27 0 222 220 85 0 chr15 29211064 29211123 -56484631 + MIR SINE MIR 29 92 -170 348 137 0 0 chr15 29212426 29212477 -56483277 - MIR SINE MIR -2 260 210 229 346 94 24 chr15 29214466 29214593 -56481161 - L2 LINE L2 -1 3271 3136 2408 82 25 238 chr15 29216717 29217154 -56478600 - LTR14B LTR ERVK 0 608 1 751 42 0 93 chr15 29217161 29217279 -56478475 - HERVK14 LTR ERVK -4 5941 5835 376 157 0 20 chr15 29217279 29217349 -56478405 - MER41C LTR ERV1 -493 61 6 1342 48 116 21 chr15 29217349 29217538 -56478216 - HERVK14 LTR ERVK -181 5764 5558 * 3453 80 20 3 chr15 29217526 29218038 -56477716 - HERVK14 LTR ERVK -1814 5429 4847 * 9025 77 11 0 chr15 29218022 29219155 -56476599 - HERVK14 LTR ERVK -3417 2528 1384 6209 65 10 0 chr15 29219180 29219953 -56475801 - HERVK14 LTR ERVK -5164 781 1 2571 74 9 236 chr15 29219953 29220398 -56475356 - LTR14B LTR ERVK 0 608 1 2144 57 92 11 chr15 29222244 29222527 -56473227 + AluY SINE Alu 1 306 -5 198 0 0 0 chr15 29224665 29224687 -56471067 + (A)n Simple_repeat Simple_repeat 1 22 0 310 123 46 0 chr15 29225559 29225624 -56470130 + CT-rich Low_complexity Low_complexity 2 69 0 351 278 96 9 chr15 29227056 29227171 -56468583 - MIR SINE MIR -114 148 24 216 0 0 0 chr15 29228614 29228638 -56467116 + (TG)n Simple_repeat Simple_repeat 1 24 0 2047 125 4 4 chr15 29228638 29228918 -56466836 - AluSq SINE Alu -33 280 1 323 244 168 15 chr15 29228960 29229091 -56466663 - MIR3 SINE MIR -38 170 20 208 226 16 48 chr15 29229137 29229199 -56466555 - MIR SINE MIR -109 153 94 2072 113 32 3 chr15 29229393 29229675 -56466079 + AluSg SINE Alu 1 290 -20 280 209 86 19 chr15 29230051 29230156 -56465598 - MIR SINE MIR -29 233 122 274 365 39 0 chr15 29230216 29230320 -56465434 - L2 LINE L2 -20 3252 3145 248 319 97 7 chr15 29231874 29232018 -56463736 + MIR SINE MIR 20 176 -86 992 229 96 42 chr15 29232304 29232657 -56463097 + L1ME1 LINE L1 4258 4629 -1517 1307 283 60 8 chr15 29232662 29233062 -56462692 - LTR16B LTR ERVL 0 464 44 2477 208 104 45 chr15 29233134 29234542 -56461212 + L1ME1 LINE L1 4681 6330 -4 820 202 122 53 chr15 29234822 29235084 -56460670 + MER45C DNA AcHobo 1 280 -673 707 223 147 5 chr15 29235153 29235350 -56460404 + MER45C DNA AcHobo 725 949 -4 332 247 54 21 chr15 29236262 29236355 -56459399 + MIR SINE MIR 30 125 -83 450 301 57 46 chr15 29236748 29237030 -56458724 - MER102a DNA MER1_type -10 320 36 555 259 161 5 chr15 29240046 29240239 -56455515 + MIR SINE MIR 40 262 0 309 198 123 9 chr15 29240879 29240985 -56454769 + MIR SINE MIR 90 207 -55 549 194 28 0 chr15 29241112 29241220 -56454534 + MER94 DNA DNA 4 114 -20 375 346 34 19 chr15 29241374 29241579 -56454175 - MIR SINE MIR 0 262 55 285 223 18 62 chr15 29242996 29243108 -56452646 + L2 LINE L2 2917 3023 -249 309 255 60 65 chr15 29243390 29243664 -56452090 + L1MEd LINE L1 984 1265 -1242 352 264 88 31 chr15 29243744 29243903 -56451851 - MARNA DNA Mariner -209 377 210 343 290 48 14 chr15 29244893 29245038 -56450716 - MIR SINE MIR -1 261 112 287 256 115 0 chr15 29246204 29246282 -56449472 - MIR3 SINE MIR -22 186 100 285 281 35 35 chr15 29246574 29246688 -56449066 - L2 LINE L2 -1 3271 3158 2225 104 0 29 chr15 29248924 29249231 -56446523 + AluSx SINE Alu 1 298 -14 288 235 113 35 chr15 29249445 29249560 -56446194 - L2 LINE L2 -12 3260 3137 966 256 17 0 chr15 29251622 29251856 -56443898 + MIR SINE MIR 15 252 -10 2025 12 16 0 chr15 29251866 29252110 -56443644 - L1P LINE L1 -824 5322 5075 962 34 8 0 chr15 29252110 29252224 -56443530 + L1PA2 LINE L1 6037 6155 0 2852 143 32 23 chr15 29252354 29252879 -56442875 - Tigger6 DNA MER2_type 0 1597 1068 21 0 0 0 chr15 29253078 29253099 -56442655 + AT_rich Low_complexity Low_complexity 1 21 0 280 285 60 53 chr15 29255192 29255343 -56440411 - MER5A DNA MER1_type -4 185 34 220 185 0 141 chr15 29255541 29255633 -56440121 - MER5B DNA MER1_type -97 81 3 319 203 0 0 chr15 29255640 29255704 -56440050 - MIR3 SINE MIR -52 156 93 193 306 42 28 chr15 29255727 29255799 -56439955 - MIR3 SINE MIR -41 167 95 894 279 20 24 chr15 29257005 29257299 -56438455 - L1ME3A LINE L1 -214 5956 5664 1200 104 0 0 chr15 29257952 29258106 -56437648 + AluSg/x SINE Alu 137 290 -22 223 227 0 0 chr15 29258165 29258209 -56437545 - L2 LINE L2 -4 3309 3266 207 0 0 0 chr15 29259429 29259452 -56436302 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 326 213 0 0 chr15 29260173 29260234 -56435520 + AluJ/monomer SINE Alu 239 299 -3 1061 162 22 0 chr15 29261162 29261347 -56434407 + MER5A DNA MER1_type 1 189 0 610 217 22 0 chr15 29261714 29261852 -56433902 + MER5B DNA MER1_type 3 143 -35 3583 233 186 43 chr15 29263092 29263257 -56432497 - L2 LINE L2 -5 3308 3168 681 170 9 0 chr15 29263257 29263369 -56432385 + MER81 DNA DNA 1 113 -1 3583 233 186 43 chr15 29263369 29265156 -56430598 - L2 LINE L2 -145 3168 1032 508 272 66 3 chr15 29265245 29265569 -56430185 - L1MC4 LINE L1 -467 7575 7281 330 141 113 0 chr15 29265571 29265642 -56430112 - L2 LINE L2 -2285 1029 951 2224 121 0 10 chr15 29265683 29265990 -56429764 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr15 29267022 29267045 -56428709 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1101 152 0 0 chr15 29267199 29267357 -56428397 - AluJb SINE Alu -14 298 141 25 31 0 0 chr15 29267357 29267389 -56428365 + AT_rich Low_complexity Low_complexity 1 32 0 1553 173 0 22 chr15 29268902 29269210 -56426544 - AluJb SINE Alu 0 312 11 337 247 186 10 chr15 29269257 29269425 -56426329 - MIR SINE MIR -3 259 51 289 297 65 14 chr15 29269642 29269780 -56425974 - MIR3 SINE MIR -5 203 59 1944 179 44 71 chr15 29270140 29270488 -56425266 - MLT1D LTR MaLR 0 505 174 2429 81 0 0 chr15 29270488 29270784 -56424970 - AluY SINE Alu -2 309 14 1944 179 44 71 chr15 29270784 29270953 -56424801 - MLT1D LTR MaLR -331 174 2 582 237 28 28 chr15 29271034 29271211 -56424543 + MIR SINE MIR 40 216 -46 217 316 132 0 chr15 29271383 29271459 -56424295 - L2 LINE L2 -54 3218 3133 387 339 57 13 chr15 29271768 29271998 -56423756 - L2 LINE L2 -469 2845 2606 387 0 0 0 chr15 29272968 29273011 -56422743 + (TG)n Simple_repeat Simple_repeat 1 43 0 315 49 0 0 chr15 29273010 29273051 -56422703 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 243 0 0 0 chr15 29273319 29273346 -56422408 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 197 309 55 0 chr15 29273416 29273471 -56422283 - L2 LINE L2 -93 3179 3122 21 71 0 0 chr15 29273812 29273854 -56421900 + AT_rich Low_complexity Low_complexity 1 42 0 245 106 0 43 chr15 29274616 29274663 -56421091 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1555 188 15 3 chr15 29275716 29276046 -56419708 + L1MA4 LINE L1 5962 6295 -5 1061 259 26 47 chr15 29276144 29276527 -56419227 - L2 LINE L2 0 3313 2939 246 335 67 30 chr15 29277077 29277241 -56418513 + MIR SINE MIR 66 235 -27 234 309 31 0 chr15 29278673 29278770 -56416984 + MIR SINE MIR 157 256 -6 185 265 235 15 chr15 29279586 29279718 -56416036 - MIR3 SINE MIR -46 162 2 2258 112 0 13 chr15 29279907 29280212 -56415542 + AluSx SINE Alu 1 301 -11 347 263 17 34 chr15 29282532 29282650 -56413104 - L2 LINE L2 -20 3252 3137 518 286 101 29 chr15 29283470 29283769 -56411985 - Charlie8 DNA MER1_type -990 1427 9 260 122 0 0 chr15 29284873 29284914 -56410840 - L2 LINE L2 -10 3303 3263 191 279 0 0 chr15 29288871 29288914 -56406840 + MIR3 SINE MIR 155 197 -11 504 282 46 11 chr15 29288930 29289104 -56406650 + MIR SINE MIR 64 243 -19 214 284 62 57 chr15 29289212 29289388 -56406366 - MIR SINE MIR -64 198 22 189 167 62 0 chr15 29290217 29290265 -56405489 - MIR SINE MIR -71 191 141 719 195 0 0 chr15 29290394 29290512 -56405242 + FRAM SINE Alu 32 149 -27 297 68 0 0 chr15 29290512 29290556 -56405198 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 336 223 36 62 chr15 29290799 29290911 -56404843 - MER102b DNA MER1_type -1 340 232 182 267 83 0 chr15 29292002 29292062 -56403692 - MIR SINE MIR -64 198 134 236 163 0 0 chr15 29292491 29292534 -56403220 + L2 LINE L2 3224 3266 -6 1211 196 29 82 chr15 29293600 29293977 -56401777 - MLT1C LTR MaLR 0 467 111 324 247 31 31 chr15 29294078 29294175 -56401579 - MLT1C LTR MaLR -408 97 1 374 202 43 0 chr15 29294267 29294361 -56401393 - MER5A DNA MER1_type -83 106 9 338 280 173 7 chr15 29294388 29294538 -56401216 + MER5A DNA MER1_type 15 189 0 198 0 0 0 chr15 29294897 29294919 -56400835 + (T)n Simple_repeat Simple_repeat 1 22 0 2236 91 31 0 chr15 29294950 29295236 -56400518 + AluSq SINE Alu 1 295 -18 329 213 13 13 chr15 29295505 29295580 -56400174 + MIR SINE MIR 66 140 -122 620 295 159 6 chr15 29296005 29296364 -56399390 - L2 LINE L2 0 3313 2900 850 230 14 48 chr15 29296515 29296724 -56399030 - MER63A DNA MER1_type -8 202 1 360 304 40 0 chr15 29296736 29296861 -56398893 - L2 LINE L2 -546 2768 2639 236 306 51 20 chr15 29297277 29297375 -56398379 - MIR3 SINE MIR -95 113 13 3453 152 109 8 chr15 29297902 29298572 -56397182 - L1MB3 LINE L1 -2 6181 5444 1085 198 14 9 chr15 29298583 29298800 -56396954 - AluJo SINE Alu -16 296 79 314 244 184 95 chr15 29300980 29301148 -56394606 + MARNA DNA Mariner 400 582 -4 369 259 62 0 chr15 29301805 29301917 -56393837 + MER5C DNA MER1_type 6 124 -200 1984 146 3 13 chr15 29301972 29302450 -56393304 + AluSx SINE Alu 1 475 0 322 200 74 0 chr15 29302475 29302570 -56393184 + MER5C DNA MER1_type 205 306 -18 226 232 61 12 chr15 29303250 29303332 -56392422 - MIR3 SINE MIR -14 194 109 341 272 231 0 chr15 29303931 29304100 -56391654 + MIR SINE MIR 47 254 -8 228 231 0 0 chr15 29304128 29304180 -56391574 - L2 LINE L2 0 3313 3262 252 0 0 0 chr15 29304635 29304663 -56391091 + (A)n Simple_repeat Simple_repeat 1 28 0 437 214 159 8 chr15 29305438 29305564 -56390190 + L1ME3A LINE L1 5729 5873 -297 708 214 29 29 chr15 29305591 29305801 -56389953 + LTR37A LTR ERV1 217 426 0 187 154 0 51 chr15 29306409 29306448 -56389306 - MIR SINE MIR -180 82 46 288 282 26 77 chr15 29306658 29306814 -56388940 + MIR SINE MIR 70 217 -45 1901 139 48 0 chr15 29307110 29307436 -56388318 - AluJo SINE Alu 0 343 4 1393 276 81 16 chr15 29307814 29308525 -56387229 - L2 LINE L2 -2 3311 2539 1179 201 138 56 chr15 29308834 29309178 -56386576 - MLT1G LTR MaLR 0 590 178 495 201 67 22 chr15 29309302 29309436 -56386318 + MLT1L LTR MaLR 476 615 0 1411 278 62 24 chr15 29309843 29310310 -56385444 + LTR16C LTR ERVL 7 491 0 435 236 161 12 chr15 29311686 29311847 -56383907 + MIR SINE MIR 78 262 0 373 206 272 7 chr15 29313368 29313504 -56382250 + MIR SINE MIR 20 191 -71 848 241 133 60 chr15 29313742 29314156 -56381598 + MLT1J LTR MaLR 22 465 -46 2178 212 33 26 chr15 29314165 29314623 -56381131 + MLT1F LTR MaLR 3 463 -79 269 241 0 0 chr15 29314950 29315008 -56380746 + L2 LINE L2 3256 3313 0 1020 233 15 22 chr15 29315282 29315553 -56380201 - LTR37B LTR ERV1 0 468 200 238 291 23 0 chr15 29315601 29315687 -56380067 - LTR37B LTR ERV1 -270 198 111 24 0 0 0 chr15 29316009 29316033 -56379721 + AT_rich Low_complexity Low_complexity 1 24 0 38243 35 25 2 chr15 29316033 29321477 -56374277 - L1PA2 LINE L1 -2 6468 893 639 35 0 0 chr15 29321444 29321542 -56374212 - L1PA2 LINE L1 -6081 380 10 * 604 246 14 0 chr15 29321857 29321995 -56373759 + MER46C DNA MER2_type 85 224 -114 1625 82 4 35 chr15 29322059 29322291 -56373463 - AluY SINE Alu -3 308 84 407 215 243 23 chr15 29322378 29322555 -56373199 - L1ME LINE L1 -356 5765 5550 419 213 107 40 chr15 29325310 29325460 -56370294 + MIR SINE MIR 34 193 -69 2922 262 112 42 chr15 29325960 29327508 -56368246 + L1MD3 LINE L1 5391 7047 -948 2101 128 0 19 chr15 29327515 29327827 -56367927 + AluSx SINE Alu 1 306 -6 791 140 30 35 chr15 29327827 29328016 -56367738 + L1MC4 LINE L1 7125 7357 -685 919 214 116 10 chr15 29328016 29328257 -56367497 - MLT1G LTR MaLR 0 590 343 656 214 0 7 chr15 29328294 29328434 -56367320 - L1MC4a LINE L1 -529 7279 7141 403 206 75 34 chr15 29328597 29328743 -56367011 - L1ME LINE L1 -2338 5470 5319 496 319 110 42 chr15 29328802 29329392 -56366362 - L1ME LINE L1 -875 5271 4642 289 260 10 62 chr15 29329418 29329514 -56366240 - L1ME LINE L1 -1569 4577 4487 2139 131 0 3 chr15 29329718 29330016 -56365738 + AluSq SINE Alu 1 297 -16 311 220 0 0 chr15 29330644 29330703 -56365051 + AluS SINE Alu 1 59 -244 345 325 40 0 chr15 29331265 29331391 -56364363 - MIR SINE MIR -70 192 62 287 309 0 86 chr15 29333047 29333209 -56362545 - L2 LINE L2 -218 3054 2907 512 285 44 18 chr15 29333635 29333921 -56361833 + LTR16A LTR ERVL 114 436 -14 1018 203 6 0 chr15 29335298 29335475 -56360279 - MER45A DNA AcHobo 0 178 1 301 258 43 32 chr15 29335529 29335622 -56360132 - MIR3 SINE MIR -45 163 70 304 210 25 0 chr15 29336106 29336187 -56359567 - MIR3 SINE MIR -19 189 107 270 172 69 0 chr15 29336409 29336467 -56359287 + MIR SINE MIR 113 174 -88 446 278 92 9 chr15 29337475 29337702 -56358052 + MIR SINE MIR 3 248 -14 1561 204 22 20 chr15 29337804 29338125 -56357629 - MLT1A2 LTR MaLR -33 534 21 1606 239 37 26 chr15 29340201 29340580 -56355174 - L1ME3A LINE L1 -5 6165 5779 2168 181 62 2 chr15 29340580 29340984 -56354770 + MSTA LTR MaLR 1 428 0 1606 239 37 26 chr15 29340984 29341065 -56354689 - L1ME3A LINE L1 -391 5779 5700 645 159 0 0 chr15 29341505 29341612 -56354142 + FRAM SINE Alu 70 176 0 1377 245 81 7 chr15 29341831 29342263 -56353491 + MER113 DNA MER1_type? 39 502 -19 891 309 72 33 chr15 29342865 29343130 -56352624 + L1MC4a LINE L1 5255 5508 -2300 5705 111 6 3 chr15 29343130 29344589 -56351165 - L1PA16 LINE L1 0 6166 4678 891 309 72 33 chr15 29344589 29344951 -56350803 + L1MC4a LINE L1 5508 5906 -1902 280 275 186 21 chr15 29346075 29346268 -56349486 + L2 LINE L2 3086 3310 -3 800 208 81 60 chr15 29346681 29347051 -56348703 + L1MC5 LINE L1 7559 7936 -25 611 274 17 0 chr15 29347084 29347259 -56348495 + MIR SINE MIR 82 259 -3 360 212 93 8 chr15 29347310 29347428 -56348326 + L1ME4a LINE L1 5988 6115 -6 1876 164 3 7 chr15 29347441 29347745 -56348009 + AluJb SINE Alu 4 306 -6 207 412 17 0 chr15 29348449 29348568 -56347186 + L2 LINE L2 2937 3057 -215 465 272 0 9 chr15 29348620 29348734 -56347020 + MLT1J LTR MaLR 1 113 -398 2404 48 38 3 chr15 29348734 29349024 -56346730 + AluY SINE Alu 1 300 -11 1116 212 0 5 chr15 29349036 29349248 -56346506 + AluJo SINE Alu 85 295 -17 406 299 28 35 chr15 29349254 29349398 -56346356 + MLT1J LTR MaLR 109 251 -260 367 246 46 15 chr15 29349469 29349599 -56346155 + MLT1J LTR MaLR 378 511 0 617 238 33 41 chr15 29349650 29349894 -56345860 + L1MEc LINE L1 1235 1476 -4920 211 309 0 0 chr15 29349912 29349967 -56345787 + L2 LINE L2 3218 3272 0 412 319 15 7 chr15 29350026 29350161 -56345593 + MIR3 SINE MIR 21 156 -52 2260 108 0 10 chr15 29350188 29350494 -56345260 + AluSx SINE Alu 5 307 -5 1133 175 47 5 chr15 29350979 29351190 -56344564 + L1MB5 LINE L1 5946 6165 -9 21 0 0 0 chr15 29351191 29351212 -56344542 + AT_rich Low_complexity Low_complexity 1 21 0 1793 249 65 26 chr15 29351215 29352003 -56343751 + L1MEc LINE L1 2134 2904 -3311 435 85 0 0 chr15 29352008 29352067 -56343687 + L1MA8 LINE L1 6051 6109 -182 864 133 0 0 chr15 29352068 29352188 -56343566 - AluJb SINE Alu -15 297 178 1083 108 40 6 chr15 29352191 29352367 -56343387 + L1MA8 LINE L1 6106 6287 -4 513 144 0 11 chr15 29352373 29352463 -56343291 + L1MB4 LINE L1 5315 5403 -775 * 9636 136 10 20 chr15 29352440 29354069 -56341685 + L1P LINE L1 1994 3606 -2540 4598 116 17 16 chr15 29354072 29354778 -56340976 - L1P LINE L1 -949 5197 4491 6255 70 8 11 chr15 29354784 29355589 -56340165 + L1PA10 LINE L1 5367 6168 0 4410 150 18 23 chr15 29355630 29356424 -56339330 + L1MB4 LINE L1 5385 6174 -6 230 235 143 0 chr15 29356395 29356441 -56339313 + L1M4 LINE L1 2771 2809 -3337 * 432 116 0 35 chr15 29356441 29356527 -56339227 + L1MB8 LINE L1 6096 6178 0 230 235 143 0 chr15 29356527 29356578 -56339176 + L1M4 LINE L1 2809 2882 -3264 205 264 0 0 chr15 29356578 29356631 -56339123 + MIR3 SINE MIR 141 193 -15 252 286 0 0 chr15 29357347 29357410 -56338344 - L2 LINE L2 -2 3270 3208 507 152 0 0 chr15 29358345 29358424 -56337330 + AluJ/FLAM SINE Alu 2 80 -232 239 329 79 0 chr15 29358438 29358578 -56337176 + MIR SINE MIR 40 190 -72 807 166 18 71 chr15 29359143 29359312 -56336442 - LTR16C LTR ERVL -22 469 310 1911 161 133 26 chr15 29360224 29360645 -56335109 - MER31B LTR ERV1 0 466 1 438 301 66 18 chr15 29360703 29360869 -56334885 - MIR SINE MIR -77 185 12 581 247 22 28 chr15 29361485 29361663 -56334091 + MIR3 SINE MIR 15 191 -17 653 245 27 21 chr15 29361888 29362076 -56333678 - Charlie8 DNA MER1_type -2143 274 86 1656 191 26 59 chr15 29362333 29362720 -56333034 - MLT1A2 LTR MaLR 0 374 1 302 225 0 0 chr15 29363030 29363101 -56332653 - MIR SINE MIR -142 120 50 330 200 61 128 chr15 29363471 29363651 -56332103 - L1ME4a LINE L1 -27 6094 5927 182 200 0 0 chr15 29363696 29363736 -56332018 - MIR SINE MIR -87 121 82 603 40 0 0 chr15 29363737 29363811 -56331943 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 40 0 0 chr15 29364011 29364036 -56331718 + (ATG)n Simple_repeat Simple_repeat 3 27 0 765 303 70 24 chr15 29364096 29364681 -56331073 - L1ME4a LINE L1 -216 5905 5279 1012 265 102 17 chr15 29364696 29365108 -56330646 + MLT1J2 LTR MaLR 4 450 0 316 329 14 21 chr15 29365258 29365401 -56330353 - MER5B DNA MER1_type -36 142 1 300 296 17 17 chr15 29365544 29365659 -56330095 + MIR SINE MIR 48 162 -100 224 182 36 0 chr15 29366061 29366116 -56329638 + (TG)n Simple_repeat Simple_repeat 2 58 0 416 259 42 62 chr15 29366250 29366443 -56329311 - MIR SINE MIR -16 246 58 672 181 58 7 chr15 29366452 29366607 -56329147 + L1MB7 LINE L1 6022 6184 0 405 295 120 64 chr15 29367362 29367466 -56328288 + L2 LINE L2 2212 2309 -1004 1969 223 31 4 chr15 29367466 29367920 -56327834 + MLT1C LTR MaLR 1 466 -1 405 295 120 64 chr15 29367920 29368589 -56327165 + L2 LINE L2 2309 3056 -257 791 258 176 34 chr15 29368655 29369012 -56326742 - MLT1J LTR MaLR -4 507 100 546 229 0 76 chr15 29369251 29369338 -56326416 + MIR SINE MIR 118 193 -69 1954 121 11 4 chr15 29369338 29369642 -56326112 + AluSx SINE Alu 1 306 0 546 229 0 76 chr15 29369642 29369708 -56326046 + MIR SINE MIR 193 262 0 802 170 14 0 chr15 29370869 29371016 -56324738 + FRAM SINE Alu 13 161 -15 263 212 61 8 chr15 29371058 29371190 -56324564 + (TA)n Simple_repeat Simple_repeat 1 139 0 3104 86 17 0 chr15 29371190 29371609 -56324145 + L1PA10 LINE L1 5743 6168 0 24 0 0 0 chr15 29371646 29371670 -56324084 + AT_rich Low_complexity Low_complexity 1 24 0 325 326 16 64 chr15 29371687 29371874 -56323880 + HAL1b LINE L1 13 190 -1158 241 151 19 0 chr15 29372021 29372074 -56323680 + L1MD3 LINE L1 7940 7993 -2 264 30 0 0 chr15 29372141 29372174 -56323580 + (TG)n Simple_repeat Simple_repeat 1 33 0 2164 233 72 65 chr15 29372178 29373077 -56322677 + L1MC5 LINE L1 6625 7530 -431 400 284 47 62 chr15 29373169 29373380 -56322374 + L1ME3A LINE L1 5962 6169 -1 500 246 78 24 chr15 29373727 29373894 -56321860 + MIR3 SINE MIR 33 208 0 436 282 72 28 chr15 29373899 29374080 -56321674 + MER5A DNA MER1_type 1 189 0 352 228 30 40 chr15 29374113 29374214 -56321540 + LTR48B LTR ERV1 1 100 -544 * 1728 215 92 10 chr15 29374188 29374602 -56321152 + MER39 LTR ERV1 260 707 0 229 330 62 0 chr15 29374688 29374785 -56320969 - MIR SINE MIR -61 201 99 184 188 118 71 chr15 29375504 29375589 -56320165 + L3 LINE CR1 1345 1433 -144 5032 11 0 0 chr15 29375939 29376496 -56319258 - L1PA2 LINE L1 0 6155 5599 294 85 0 21 chr15 29377725 29377772 -56317982 - L1MC4 LINE L1 -1 8041 7996 * 584 212 58 0 chr15 29377765 29377902 -56317852 - L1MC4 LINE L1 -484 7558 7414 268 257 80 9 chr15 29378205 29378318 -56317436 + L1ME LINE L1 5776 5896 -225 260 143 0 41 chr15 29378423 29378472 -56317282 + L2 LINE L2 2695 2741 -573 1961 142 0 7 chr15 29378576 29378872 -56316882 - AluSx SINE Alu -18 294 1 651 191 22 7 chr15 29378886 29379022 -56316732 + MER103 DNA DNA 20 157 -9 701 234 20 50 chr15 29379066 29379267 -56316487 + MLT1J2 LTR MaLR 254 448 -2 506 288 151 14 chr15 29379345 29379564 -56316190 - MIR SINE MIR 0 262 14 1181 167 29 9 chr15 29379689 29379899 -56315855 + MER20 DNA MER1_type 1 214 -5 193 285 215 38 chr15 29380318 29380504 -56315250 - L3 LINE CR1 -15 1562 1344 210 71 0 0 chr15 29380774 29380802 -56314952 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 238 329 14 0 chr15 29380803 29380876 -56314878 - L2 LINE L2 -14 3299 3226 261 335 148 29 chr15 29381083 29381462 -56314292 - L2 LINE L2 -343 2971 2548 1913 100 25 62 chr15 29382040 29382360 -56313394 + AluSg SINE Alu 1 308 -2 239 313 0 30 chr15 29383333 29383400 -56312354 + L2 LINE L2 3187 3251 -21 769 210 117 37 chr15 29383899 29384113 -56311641 + MIR SINE MIR 19 249 -13 947 291 76 20 chr15 29384605 29385065 -56310689 + L2 LINE L2 2826 3311 -2 234 293 9 69 chr15 29386200 29386316 -56309438 + MIR SINE MIR 148 256 -6 1268 256 96 54 chr15 29386969 29387540 -56308214 - MLT1G1 LTR MaLR 0 595 1 1492 224 21 45 chr15 29387737 29388116 -56307638 - MLT1A2 LTR MaLR -4 370 1 270 0 0 0 chr15 29388594 29388624 -56307130 + (A)n Simple_repeat Simple_repeat 1 30 0 393 214 48 0 chr15 29389106 29389190 -56306564 - LTR16C LTR ERVL 0 491 404 222 323 68 53 chr15 29390678 29391015 -56304739 - L2 LINE L2 -606 2708 2367 216 273 0 0 chr15 29391986 29392063 -56303691 + GA-rich Low_complexity Low_complexity 3 79 0 493 282 127 0 chr15 29392321 29392463 -56303291 + MIR3 SINE MIR 20 179 -29 372 217 94 38 chr15 29392800 29392906 -56302848 + MIR SINE MIR 18 129 -79 2432 74 0 0 chr15 29393066 29393377 -56302377 - AluY SINE Alu 0 311 1 2198 107 3 0 chr15 29393392 29393701 -56302053 - AluSp SINE Alu -2 311 2 1336 231 134 26 chr15 29393701 29394130 -56301624 - LTR33A LTR ERVL -33 490 44 521 291 271 63 chr15 29394159 29395131 -56300623 - L3 LINE CR1 -213 1364 191 194 192 19 0 chr15 29395566 29395618 -56300136 + CT-rich Low_complexity Low_complexity 2 54 0 826 244 65 0 chr15 29396046 29396275 -56299479 + L1ME4a LINE L1 5654 5897 -224 370 248 101 31 chr15 29396296 29396425 -56299329 + L1ME4a LINE L1 5977 6114 -7 2342 87 3 0 chr15 29398121 29398432 -56297322 - AluSp SINE Alu -1 312 1 420 257 181 7 chr15 29398523 29398667 -56297087 - MIR SINE MIR -12 250 82 397 270 68 33 chr15 29398852 29399041 -56296713 + MIR SINE MIR 1 194 -14 272 263 21 32 chr15 29399744 29399839 -56295915 + C-rich Low_complexity Low_complexity 5 98 0 202 194 28 46 chr15 29400264 29400372 -56295382 + (CCG)n Simple_repeat Simple_repeat 2 107 0 211 258 200 17 chr15 29401592 29401712 -56294042 - MIR SINE MIR -58 204 63 502 245 260 10 chr15 29402930 29403130 -56292624 + MIR SINE MIR 13 262 0 396 59 0 0 chr15 29403315 29403366 -56292388 + (TG)n Simple_repeat Simple_repeat 1 51 0 182 348 42 59 chr15 29405451 29405569 -56290185 - L2 LINE L2 -45 3227 3112 182 191 88 88 chr15 29405669 29405737 -56290017 + L2 LINE L2 3143 3210 -62 252 200 0 0 chr15 29405773 29405828 -56289926 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 1316 239 92 66 chr15 29405828 29406250 -56289504 - LTR16A LTR ERVL 0 450 18 207 0 0 0 chr15 29407100 29407123 -56288631 + (TA)n Simple_repeat Simple_repeat 1 23 0 1909 98 83 0 chr15 29407875 29408151 -56287603 + AluSx SINE Alu 1 299 -13 692 271 104 5 chr15 29408262 29408483 -56287271 - MIR SINE MIR -5 257 15 21 0 0 0 chr15 29409400 29409421 -56286333 + AT_rich Low_complexity Low_complexity 1 21 0 228 355 139 33 chr15 29409984 29410438 -56285316 + L2 LINE L2 1960 2461 -853 350 204 97 53 chr15 29410465 29410578 -56285176 - MIR SINE MIR -79 183 66 313 284 39 58 chr15 29410627 29410782 -56284972 + L1MB8 LINE L1 5734 5885 -293 186 43 0 0 chr15 29410836 29410859 -56284895 + (CA)n Simple_repeat Simple_repeat 1 23 0 309 227 216 0 chr15 29412133 29412221 -56283533 + Tigger3(Golem) DNA MER2_type 1 107 -2922 4467 118 45 1 chr15 29412222 29412935 -56282819 + Tigger3(Golem) DNA MER2_type 2284 3027 -2 22 0 0 0 chr15 29412978 29413000 -56282754 + AT_rich Low_complexity Low_complexity 1 22 0 782 254 70 12 chr15 29413972 29414228 -56281526 + HAL1 LINE L1 1428 1698 -809 303 196 0 0 chr15 29414232 29414288 -56281466 + MER58 DNA MER1_type 1 56 -2364 256 190 228 0 chr15 29414335 29414414 -56281340 + MER58 DNA MER1_type 2318 2414 -6 1589 236 106 35 chr15 29414431 29415061 -56280693 + HAL1 LINE L1 1706 2380 -127 1017 144 5 43 chr15 29415159 29415346 -56280408 - FRAM SINE Alu -2 174 1 200 310 113 55 chr15 29415628 29415957 -56279797 - L2 LINE L2 -93 3179 2832 239 208 21 0 chr15 29416754 29416802 -56278952 - MER20B DNA MER1_type -705 78 30 1859 149 47 90 chr15 29417027 29417471 -56278283 - MER61B LTR ERV1 0 425 1 249 264 78 90 chr15 29418169 29418336 -56277418 - MIR3 SINE MIR -19 189 25 1833 301 107 27 chr15 29420783 29421747 -56274007 + L1ME LINE L1 3545 4430 -1732 2537 75 3 0 chr15 29421747 29422052 -56273702 + AluSp SINE Alu 1 306 -7 1833 301 107 27 chr15 29422052 29422602 -56273152 + L1ME LINE L1 4430 4935 -1227 2193 113 3 3 chr15 29422602 29422894 -56272860 + AluSp SINE Alu 1 292 -21 1833 301 107 27 chr15 29422894 29423454 -56272300 + L1ME LINE L1 4935 5794 -368 2832 10 0 16 chr15 29423966 29424278 -56271476 - AluYa5 SINE Alu -4 307 1 422 250 45 80 chr15 29424421 29424621 -56271133 + MIR SINE MIR 27 219 -43 476 311 25 0 chr15 29425184 29425354 -56270400 + MIR SINE MIR 17 189 -65 2491 62 3 10 chr15 29426078 29426382 -56269372 + AluSg SINE Alu 1 302 -8 180 313 0 12 chr15 29426589 29426669 -56269085 - L2 LINE L2 -919 2395 2317 236 270 81 86 chr15 29426682 29426856 -56268898 + L2 LINE L2 2304 2476 -838 1409 233 142 57 chr15 29426967 29427580 -56268174 - Charlie7 DNA MER1_type -1892 720 56 2345 98 0 7 chr15 29428580 29428887 -56266867 + AluSg SINE Alu 1 305 -5 272 118 0 20 chr15 29430532 29430583 -56265171 + (TA)n Simple_repeat Simple_repeat 2 51 0 475 294 14 0 chr15 29430583 29430729 -56265025 + MER103 DNA DNA 10 157 -9 427 245 28 0 chr15 29431639 29431745 -56264009 - MER81 DNA DNA -3 111 3 1576 189 32 20 chr15 29431816 29432248 -56263506 - MLT1D LTR MaLR -8 497 1 23 0 0 0 chr15 29432285 29432308 -56263446 + AT_rich Low_complexity Low_complexity 1 23 0 546 159 91 0 chr15 29432641 29432729 -56263025 - AluJb SINE Alu -88 224 129 279 0 0 0 chr15 29432734 29432765 -56262989 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1847 148 0 0 chr15 29432767 29433030 -56262724 - AluJb SINE Alu -28 284 22 1957 210 57 21 chr15 29433161 29433741 -56262013 + Charlie2 DNA MER1_type 2230 2830 -32 650 174 23 30 chr15 29433741 29433873 -56261881 + FLAM_A SINE Alu 1 131 -2 26 23 0 23 chr15 29433882 29433902 -56261852 + AT_rich Low_complexity Low_complexity 1 20 -23 1956 150 7 0 chr15 29433902 29434189 -56261565 - AluSx SINE Alu -23 289 1 26 23 0 23 chr15 29434189 29434212 -56261542 + AT_rich Low_complexity Low_complexity 20 43 0 189 203 130 29 chr15 29434393 29434462 -56261292 - L2 LINE L2 -29 3243 3168 691 297 48 23 chr15 29434574 29434884 -56260870 - MARNA DNA Mariner -14 572 255 1292 225 73 31 chr15 29435568 29435990 -56259764 - HsTC2 DNA Tc2 0 1898 1283 21 57 0 0 chr15 29436558 29436593 -56259161 + AT_rich Low_complexity Low_complexity 1 35 0 226 229 0 0 chr15 29437556 29437604 -56258150 + MIR SINE MIR 156 203 -59 2249 115 0 0 chr15 29437833 29438141 -56257613 + AluSx SINE Alu 1 308 0 1907 134 3 35 chr15 29440727 29441041 -56254713 - AluJo SINE Alu -8 304 1 2397 158 21 32 chr15 29441959 29442390 -56253364 - MSTB LTR MaLR 0 426 1 388 243 128 34 chr15 29443345 29443493 -56252261 + MIR3 SINE MIR 23 184 -24 22 0 0 0 chr15 29443944 29443966 -56251788 + AT_rich Low_complexity Low_complexity 1 22 0 373 125 12 38 chr15 29444013 29444093 -56251661 - L1MB8 LINE L1 0 6178 6101 677 179 0 0 chr15 29444106 29444212 -56251542 + Tigger3(Golem) DNA MER2_type 3 108 -2921 * 4614 98 45 6 chr15 29444204 29444908 -56250846 + Tigger3(Golem) DNA MER2_type 2278 3009 -20 286 253 30 10 chr15 29444918 29445017 -56250737 - L1MB8 LINE L1 -82 6096 5996 401 320 8 8 chr15 29445464 29445589 -56250165 + MER5A DNA MER1_type 55 179 -10 204 67 0 0 chr15 29449135 29449165 -56246589 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2659 95 62 61 chr15 29449259 29449512 -56246242 - MER4E LTR ERV1 0 766 515 2451 89 0 0 chr15 29449512 29449825 -56245929 - AluSq SINE Alu 0 313 1 2659 95 62 61 chr15 29449825 29450181 -56245573 - MER4E LTR ERV1 -251 515 1 730 215 46 76 chr15 29451490 29451528 -56244226 - LTR33A LTR ERVL 0 523 485 1444 51 0 0 chr15 29451528 29451703 -56244051 + L1PA8 LINE L1 5991 6165 -7 730 215 46 76 chr15 29451703 29451901 -56243853 - LTR33A LTR ERVL -38 485 294 312 254 0 0 chr15 29452187 29452250 -56243504 - MER94 DNA DNA 0 134 72 25 31 0 0 chr15 29452891 29452923 -56242831 + AT_rich Low_complexity Low_complexity 1 32 0 4013 211 104 17 chr15 29453916 29454748 -56241006 + L1M4 LINE L1 3901 4848 -1298 2110 125 33 27 chr15 29454748 29455083 -56240671 - MER1B DNA MER1_type 0 337 1 4013 211 104 17 chr15 29455083 29455314 -56240440 + L1M4 LINE L1 4848 5057 -1089 * 11198 164 23 20 chr15 29455313 29457228 -56238526 + L1 LINE L1 1 1920 -4929 1004 133 24 0 chr15 29457229 29457394 -56238360 + L1M1 LINE L1 14 182 -7383 43858 31 22 2 chr15 29457394 29463422 -56232332 + L1PA3 LINE L1 4 6155 0 21983 134 24 19 chr15 29463438 29466264 -56229490 + L1M1 LINE L1 173 3020 -4545 2102 59 12 4 chr15 29466264 29466517 -56229237 + AluSc SINE Alu 53 307 -2 21983 134 24 19 chr15 29466517 29467344 -56228410 + L1M1 LINE L1 3020 3842 -3723 1946 133 53 0 chr15 29467344 29467629 -56228125 + AluSx SINE Alu 3 302 -10 2744 138 30 56 chr15 29467637 29467698 -56228056 + L1 LINE L1 1907 1968 -4881 2348 108 0 0 chr15 29467698 29467994 -56227760 + AluSx SINE Alu 1 296 -16 2744 138 30 56 chr15 29467994 29468419 -56227335 + L1 LINE L1 1968 2380 -4469 2347 93 0 13 chr15 29468419 29468721 -56227033 + AluY SINE Alu 1 298 -13 2744 138 30 56 chr15 29468721 29468791 -56226963 + L1 LINE L1 2380 2450 -4399 316 167 15 15 chr15 29468797 29468863 -56226891 + L1 LINE L1 5006 5071 -1777 2226 105 3 16 chr15 29468863 29469168 -56226586 + AluSx SINE Alu 1 301 -11 214 182 0 23 chr15 29469172 29469216 -56226538 + GA-rich Low_complexity Low_complexity 3 45 0 436 295 113 8 chr15 29470208 29470429 -56225325 + MIR SINE MIR 14 252 -10 2215 107 14 0 chr15 29470611 29470902 -56224852 - AluSq SINE Alu -18 295 1 404 322 13 0 chr15 29470925 29471074 -56224680 + MER117 DNA MER1_type 11 161 -36 2515 265 25 15 chr15 29471247 29472002 -56223752 + L1M2 LINE L1 1054 1816 -5033 * 6848 162 45 20 chr15 29471994 29472052 -56223702 + L1PA16 LINE L1 3439 3494 -2672 183 42 0 0 chr15 29472052 29472076 -56223678 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6848 162 45 20 chr15 29472076 29473737 -56222017 + L1PA16 LINE L1 3494 5113 -1053 2556 54 0 0 chr15 29473737 29474035 -56221719 + AluY SINE Alu 1 298 -13 6848 162 45 20 chr15 29474035 29474200 -56221554 + L1PA16 LINE L1 5113 5273 -893 1857 105 3 114 chr15 29474200 29474534 -56221220 + AluSp SINE Alu 1 297 -16 6848 162 45 20 chr15 29474534 29475147 -56220607 + L1PA16 LINE L1 5273 6127 -39 5620 131 23 57 chr15 29475211 29477170 -56218584 + L1MA5 LINE L1 4403 6298 -2 245 136 0 0 chr15 29477197 29477241 -56218513 + LTR54 LTR ERV1 442 485 -25 23 0 0 0 chr15 29477472 29477495 -56218259 + AT_rich Low_complexity Low_complexity 1 23 0 841 198 31 27 chr15 29478016 29478238 -56217516 + L1MC1 LINE L1 44 266 -6130 1400 217 34 118 chr15 29478263 29478421 -56217333 + L1MC1 LINE L1 507 677 -5719 3274 102 4 4 chr15 29478421 29478900 -56216854 - L1PA14 LINE L1 0 6161 5683 1400 217 34 118 chr15 29478900 29479231 -56216523 + L1MC1 LINE L1 677 932 -5464 2342 80 3 3 chr15 29479231 29479530 -56216224 + AluY SINE Alu 1 299 -12 1400 217 34 118 chr15 29479530 29479685 -56216069 + L1MC1 LINE L1 932 1098 -5298 1286 160 101 0 chr15 29479931 29480218 -56215536 - MER33 DNA MER1_type 0 324 9 907 262 104 37 chr15 29480237 29480592 -56215162 - MLT1J2 LTR MaLR 0 450 72 340 266 28 55 chr15 29480978 29481087 -56214667 - MIR3 SINE MIR -16 192 87 240 255 19 47 chr15 29481204 29481310 -56214444 - MLT1H LTR MaLR -16 533 431 760 224 33 19 chr15 29481324 29481538 -56214216 - MER112 DNA MER1_type -39 221 5 1730 192 21 0 chr15 29481556 29481847 -56213907 + AluJb SINE Alu 1 297 -15 2352 109 0 0 chr15 29482313 29482615 -56213139 + AluSq SINE Alu 1 302 -11 697 221 43 75 chr15 29482615 29482868 -56212886 + L1ME2 LINE L1 5900 6144 -20 263 211 106 21 chr15 29482881 29483023 -56212731 + L1MC5 LINE L1 7772 7925 -36 3111 234 34 22 chr15 29484643 29485222 -56210532 + L1MC1 LINE L1 3312 3882 -2333 2133 130 3 17 chr15 29485222 29485522 -56210232 + AluSx SINE Alu 1 296 -16 3111 234 34 22 chr15 29485522 29485610 -56210144 + L1MC1 LINE L1 3882 3967 -2248 2406 97 3 0 chr15 29485610 29485919 -56209835 + AluSg SINE Alu 1 310 0 3111 234 34 22 chr15 29485919 29486212 -56209542 + L1MC1 LINE L1 3967 4285 -1930 * 4928 165 71 27 chr15 29486206 29486518 -56209236 + L1MC1 LINE L1 4618 4915 -1487 2807 121 29 2 chr15 29486518 29486933 -56208821 + MSTB LTR MaLR 1 426 0 4928 165 71 27 chr15 29486933 29487429 -56208325 + L1MC1 LINE L1 4915 5388 -1014 183 100 0 0 chr15 29487429 29487459 -56208295 + (CA)n Simple_repeat Simple_repeat 1 30 0 4928 165 71 27 chr15 29487459 29488370 -56207384 + L1MC1 LINE L1 5388 6383 -19 2426 74 0 7 chr15 29489858 29490154 -56205600 + AluSp SINE Alu 1 294 -19 26 82 0 0 chr15 29490964 29491025 -56204729 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr15 29492065 29492097 -56203657 + AT_rich Low_complexity Low_complexity 1 32 0 4183 150 50 25 chr15 29492578 29492863 -56202891 + L1MB3 LINE L1 5328 5604 -579 2025 139 0 7 chr15 29492863 29493158 -56202596 + AluSx SINE Alu 1 293 -19 4183 150 50 25 chr15 29493158 29493705 -56202049 + L1MB3 LINE L1 5604 6181 -2 22 0 0 0 chr15 29494210 29494232 -56201522 + AT_rich Low_complexity Low_complexity 1 22 0 1913 168 7 0 chr15 29494603 29494906 -56200848 + AluJb SINE Alu 1 305 -7 1510 54 0 0 chr15 29495156 29495341 -56200413 + L1PA3 LINE L1 5969 6153 -2 413 333 64 25 chr15 29495468 29495750 -56200004 + L2 LINE L2 3016 3308 -5 31 26 0 0 chr15 29496261 29496299 -56199455 + AT_rich Low_complexity Low_complexity 1 38 0 2376 99 0 0 chr15 29496403 29496695 -56199059 - AluSg SINE Alu -18 292 1 194 289 141 27 chr15 29498444 29498593 -56197161 + L2 LINE L2 1235 1400 -1914 2266 117 0 28 chr15 29498747 29499064 -56196690 + AluSx SINE Alu 1 308 -4 400 199 11 105 chr15 29499065 29499246 -56196508 - L1MEc LINE L1 -5154 1242 1079 1999 135 42 0 chr15 29499359 29499648 -56196106 + AluSx SINE Alu 1 301 -11 236 102 20 0 chr15 29499701 29499750 -56196004 + L1M4 LINE L1 4974 5023 -1123 279 128 0 21 chr15 29502173 29502220 -56193534 - LTR56 LTR ERV1 -51 394 349 461 68 82 0 chr15 29502592 29502665 -56193089 + L1MA9 LINE L1 6193 6271 -41 1020 153 20 7 chr15 29502668 29503018 -56192736 - Tigger2 DNA MER2_type -14 2704 4 254 116 0 0 chr15 29503018 29503061 -56192693 + L1MA9 LINE L1 6266 6308 -4 1641 209 88 19 chr15 29503780 29504200 -56191554 + LTR16A LTR ERVL 1 449 -1 1457 156 15 95 chr15 29504363 29504720 -56191034 + AluSx SINE Alu 1 312 0 422 276 129 9 chr15 29505687 29505919 -56189835 + MARNA DNA Mariner 20 279 -307 220 304 38 0 chr15 29505987 29506066 -56189688 - MIR SINE MIR 0 262 181 791 246 75 24 chr15 29506242 29506430 -56189324 + Tigger5 DNA MER2_type 1 178 -2145 2185 126 3 3 chr15 29506430 29506739 -56189015 + AluSq SINE Alu 1 309 -4 791 246 75 24 chr15 29506739 29506884 -56188870 + Tigger5 DNA MER2_type 178 2323 0 21311 38 0 3 chr15 29507318 29510739 -56185015 + L1PA5 LINE L1 2726 6154 0 1096 266 83 31 chr15 29511563 29512021 -56183733 + MLT1J LTR MaLR 26 507 -4 503 270 95 7 chr15 29512105 29512242 -56183512 - MIR SINE MIR -109 153 5 300 299 215 0 chr15 29512352 29512459 -56183295 + MIR3 SINE MIR 28 157 -51 210 296 54 65 chr15 29512496 29512654 -56183100 - MER5B DNA MER1_type -15 174 2 2037 169 53 11 chr15 29512727 29512935 -56182819 - MSTD LTR MaLR -2 394 161 2257 111 3 3 chr15 29512935 29513241 -56182513 - AluSp SINE Alu -7 306 1 2037 169 53 11 chr15 29513241 29513410 -56182344 - MSTD LTR MaLR -235 161 1 1852 208 97 34 chr15 29513410 29513886 -56181868 - MSTD-int LTR MaLR 0 1735 1230 3958 229 36 72 chr15 29514036 29515361 -56180393 - MSTD-int LTR MaLR -456 1279 2 1390 219 102 43 chr15 29515363 29515444 -56180310 - MSTD LTR MaLR 0 396 321 2119 125 0 0 chr15 29515444 29515725 -56180029 + AluSx SINE Alu 25 305 -7 1390 219 102 43 chr15 29515725 29516017 -56179737 - MSTD LTR MaLR -75 321 1 276 267 22 22 chr15 29516021 29516111 -56179643 - L3 LINE CR1 -59 1518 1429 36 70 0 0 chr15 29516818 29516889 -56178865 + AT_rich Low_complexity Low_complexity 1 71 0 351 247 0 17 chr15 29517062 29517240 -56178514 + G-rich Low_complexity Low_complexity 3 177 0 1143 117 0 0 chr15 29517251 29517279 -56178475 + (G)n Simple_repeat Simple_repeat 1 208 0 1143 117 0 0 chr15 29517279 29517459 -56178295 + (G)n Simple_repeat Simple_repeat 1 180 0 3897 186 51 16 chr15 29517938 29518860 -56176894 - L1 LINE L1 -1612 4534 3581 321 26 0 0 chr15 29518860 29518898 -56176856 + (TC)n Simple_repeat Simple_repeat 2 39 0 803 171 0 0 chr15 29518903 29519026 -56176728 - FLAM_C SINE Alu -20 123 1 3162 175 26 18 chr15 29519069 29519449 -56176305 + L1MB1 LINE L1 4656 5031 -1137 2152 113 3 0 chr15 29519449 29519731 -56176023 - AluSp SINE Alu -30 283 1 3162 175 26 18 chr15 29519731 29520288 -56175466 + L1MB1 LINE L1 5031 5582 -586 1912 173 3 3 chr15 29520288 29520588 -56175166 + AluJo SINE Alu 1 300 -12 1055 167 0 11 chr15 29520418 29520577 -56175177 + AluJo/FRAM SINE Alu 131 289 -23 3162 175 26 18 chr15 29520588 29521446 -56174308 + L1MB1 LINE L1 5582 6167 -1 2199 132 0 0 chr15 29520589 29520885 -56174869 + AluSx SINE Alu 1 296 -16 1055 167 0 11 chr15 29521446 29521460 -56174294 + AluJo/FRAM SINE Alu 289 302 -10 6572 185 21 26 chr15 29521946 29522343 -56173411 + L1M2c LINE L1 1071 1468 -5320 2220 109 0 0 chr15 29522343 29522656 -56173098 + AluSx SINE Alu 1 313 0 6572 185 21 26 chr15 29522656 29524400 -56171354 + L1M2c LINE L1 1468 3200 -3588 3395 102 44 58 chr15 29524401 29524896 -56170858 + L1MA5A LINE L1 5665 6150 -147 2426 70 0 3 chr15 29524896 29525198 -56170556 + AluY SINE Alu 1 301 -10 3395 102 44 58 chr15 29525198 29525341 -56170413 + L1MA5A LINE L1 6150 6294 -3 2585 74 20 3 chr15 29525497 29525849 -56169905 + L1PA13 LINE L1 5804 6161 -2 21 36 0 0 chr15 29525886 29525914 -56169840 + AT_rich Low_complexity Low_complexity 1 28 0 1739 141 36 4 chr15 29525937 29526233 -56169521 + AluSx SINE Alu 1 305 0 1774 153 10 34 chr15 29526735 29527030 -56168724 + AluSx SINE Alu 1 288 -24 246 367 75 8 chr15 29527154 29527274 -56168480 - L2 LINE L2 -17 3255 3128 1026 231 22 6 chr15 29527312 29527668 -56168086 - MLT1D LTR MaLR -114 391 1 2378 85 3 3 chr15 29528018 29528323 -56167431 + AluSq SINE Alu 1 305 -8 2223 105 0 10 chr15 29528638 29528934 -56166820 + AluSg SINE Alu 3 295 -15 609 250 93 0 chr15 29529180 29529320 -56166434 + MER21B LTR ERV1 338 490 -373 240 204 0 0 chr15 29529355 29529399 -56166355 + LTR54B LTR ERV1 409 452 -46 4049 219 47 11 chr15 29529408 29529637 -56166117 + L1M2 LINE L1 1226 1445 -5404 2154 149 68 29 chr15 29529637 29529862 -56165892 - MSTA LTR MaLR -2 426 176 333 0 0 0 chr15 29529862 29529899 -56165855 + (TG)n Simple_repeat Simple_repeat 1 37 0 2154 149 68 29 chr15 29529899 29530083 -56165671 - MSTA LTR MaLR -252 176 1 4049 219 47 11 chr15 29530083 29530860 -56164894 + L1M2 LINE L1 1445 2268 -4581 243 108 27 0 chr15 29530861 29530898 -56164856 + Alu SINE Alu 1 38 -261 14832 204 30 17 chr15 29531023 29532812 -56162942 - L1MA4A LINE L1 -29 6916 5153 225 0 0 0 chr15 29532812 29532837 -56162917 + (TATTG)n Simple_repeat Simple_repeat 2 26 0 14832 204 30 17 chr15 29532837 29535629 -56160125 - L1MA4A LINE L1 -1792 5153 2203 2103 104 4 0 chr15 29535629 29535897 -56159857 - AluSp SINE Alu -16 297 29 523 275 51 11 chr15 29536701 29536879 -56158875 - MER5A DNA MER1_type -3 186 2 2163 122 16 0 chr15 29536883 29537187 -56158567 + AluSx SINE Alu 1 309 -3 1671 223 141 76 chr15 29537246 29538021 -56157733 + LTR1B LTR ERV1 2 826 0 1951 128 80 14 chr15 29538064 29538416 -56157338 + THE1C LTR MaLR 1 375 0 569 163 0 0 chr15 29538677 29538769 -56156985 + L1MDa LINE L1 22 113 -6427 2016 218 120 4 chr15 29538781 29539281 -56156473 + L1MDa LINE L1 210 767 -5773 1160 240 68 3 chr15 29539286 29539415 -56156339 + L1MDa LINE L1 2932 3051 -3489 5979 40 18 0 chr15 29539415 29540143 -56155611 + L1PA5 LINE L1 5397 6137 -17 1160 240 68 3 chr15 29540143 29540367 -56155387 + L1MDa LINE L1 3051 3308 -3232 207 0 0 0 chr15 29540374 29540397 -56155357 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1009 197 71 0 chr15 29540435 29540689 -56155065 + L1MDa LINE L1 3867 4138 -2402 413 240 10 0 chr15 29540686 29540790 -56154964 + L1MDa LINE L1 4629 4733 -1807 * 269 279 0 0 chr15 29540790 29540851 -56154903 + MER2 DNA MER2_type 1 61 -284 * 4251 173 7 18 chr15 29540797 29541527 -56154227 - MER44D DNA MER2_type -7 598 5 427 252 84 0 chr15 29541629 29541784 -56153970 + L1MC4 LINE L1 7190 7357 -685 668 178 54 0 chr15 29541784 29541913 -56153841 - FLAM_C SINE Alu -7 136 1 714 289 79 65 chr15 29541913 29542325 -56153429 + L1MC4 LINE L1 7352 7776 -266 2339 84 0 7 chr15 29542325 29542624 -56153130 - AluSc SINE Alu -10 299 3 714 289 79 65 chr15 29542624 29542769 -56152985 + L1MC4 LINE L1 7776 7917 -125 2209 129 0 0 chr15 29542828 29543137 -56152617 + AluSx SINE Alu 1 309 -3 1822 232 45 26 chr15 29543348 29543817 -56151937 + MLT1E LTR MaLR 116 593 0 2894 98 9 5 chr15 29543826 29544246 -56151508 + L1PA10 LINE L1 5747 6168 0 191 241 69 0 chr15 29544252 29544310 -56151444 + MIR SINE MIR 179 240 -22 1960 125 3 10 chr15 29545412 29545708 -56150046 - AluSx SINE Alu 0 312 19 2497 64 3 0 chr15 29545866 29546164 -56149590 - AluSp SINE Alu -14 299 1 2112 126 7 7 chr15 29547420 29547721 -56148033 - AluJb SINE Alu -11 301 1 389 98 0 0 chr15 29547734 29547810 -56147944 - Alu SINE Alu 0 306 231 1296 65 0 0 chr15 29547811 29547966 -56147788 - AluSx SINE Alu -157 155 1 27 29 0 0 chr15 29548329 29548363 -56147391 + AT_rich Low_complexity Low_complexity 1 34 0 1381 169 89 0 chr15 29550862 29551099 -56144655 + Tigger7 DNA MER2_type 10 267 -466 462 227 10 10 chr15 29551097 29551194 -56144560 + Tigger7 DNA MER2_type 2489 2585 -2 * 21 36 0 0 chr15 29551416 29551444 -56144310 + AT_rich Low_complexity Low_complexity 1 28 0 2010 139 14 23 chr15 29551618 29551964 -56143790 + L1PA16 LINE L1 5818 6160 -6 251 176 59 20 chr15 29552161 29552263 -56143491 + (TA)n Simple_repeat Simple_repeat 2 107 0 2184 133 0 0 chr15 29552638 29552939 -56142815 + AluSx SINE Alu 1 301 -11 592 231 7 42 chr15 29553642 29553785 -56141969 - L2 LINE L2 0 3313 3176 885 179 28 17 chr15 29554810 29554989 -56140765 + MER58C DNA MER1_type 29 209 -6 1664 124 0 0 chr15 29555439 29555664 -56140090 - AluSx SINE Alu -87 225 1 21 36 0 0 chr15 29555763 29555791 -56139963 + AT_rich Low_complexity Low_complexity 1 28 0 3061 223 101 47 chr15 29555925 29556838 -56138916 - L1MDa LINE L1 -5555 985 35 298 330 55 86 chr15 29557086 29557434 -56138320 + L2 LINE L2 2921 3257 -15 332 268 14 0 chr15 29557592 29557663 -56138091 - L2 LINE L2 -47 3225 3154 2185 107 0 20 chr15 29557903 29558201 -56137553 - AluSg SINE Alu -18 292 1 277 253 47 30 chr15 29558292 29558427 -56137327 + L1MC4a LINE L1 2380 6174 0 25 0 0 0 chr15 29558446 29558471 -56137283 + AT_rich Low_complexity Low_complexity 1 25 0 197 391 14 0 chr15 29558727 29558796 -56136958 + L2 LINE L2 3154 3223 -49 335 352 116 44 chr15 29559530 29559780 -56135974 + L2 LINE L2 2985 3252 -20 22 0 0 0 chr15 29561966 29561988 -56133766 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 29562391 29562412 -56133342 + AT_rich Low_complexity Low_complexity 1 21 0 363 188 70 102 chr15 29562432 29562560 -56133194 + L1MC4 LINE L1 7902 8025 -17 2213 105 7 0 chr15 29562577 29562873 -56132881 + AluSx SINE Alu 1 298 -14 1189 192 126 53 chr15 29562997 29563256 -56132498 + MER58B DNA MER1_type 1 240 -2180 180 0 0 0 chr15 29563256 29563276 -56132478 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2318 84 3 0 chr15 29563283 29563568 -56132186 - AluSg SINE Alu -24 286 1 1189 192 126 53 chr15 29563568 29563618 -56132136 + MER58B DNA MER1_type 245 341 0 2233 95 3 0 chr15 29564489 29564783 -56130971 + AluSp SINE Alu 1 295 -18 21 57 0 0 chr15 29565022 29565057 -56130697 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr15 29566250 29566283 -56129471 + AT_rich Low_complexity Low_complexity 1 33 0 2037 128 3 7 chr15 29566288 29566578 -56129176 + AluSx SINE Alu 21 309 -3 279 309 209 22 chr15 29567017 29567156 -56128598 - L3 LINE CR1 -7 1570 1406 186 43 0 0 chr15 29567175 29567198 -56128556 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2106 108 24 0 chr15 29567966 29568254 -56127500 + AluSg SINE Alu 1 295 -15 2019 130 0 3 chr15 29568420 29568705 -56127049 + AluSg1 SINE Alu 1 284 -25 198 0 0 0 chr15 29568705 29568727 -56127027 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2079 106 31 14 chr15 29568931 29569223 -56126531 + AluSx SINE Alu 1 297 -15 182 353 0 0 chr15 29569368 29569436 -56126318 - MIR SINE MIR -122 86 19 314 127 139 25 chr15 29570639 29570718 -56125036 - MIR SINE MIR -55 207 120 572 247 175 9 chr15 29571656 29571779 -56123975 - MIR SINE MIR -1 261 160 2477 75 0 10 chr15 29571779 29572087 -56123667 + AluY SINE Alu 1 305 -6 572 247 175 9 chr15 29572087 29572184 -56123570 - MIR SINE MIR -102 160 2 1679 175 7 29 chr15 29572504 29572813 -56122941 - AluJo SINE Alu -10 302 1 290 204 0 139 chr15 29573122 29573230 -56122524 + MIR SINE MIR 57 149 -113 1886 135 0 8 chr15 29573238 29573505 -56122249 + AluSx SINE Alu 34 298 -14 732 165 0 24 chr15 29573582 29573709 -56122045 + FLAM_C SINE Alu 17 140 -3 2115 136 0 13 chr15 29573753 29574061 -56121693 + AluSq SINE Alu 1 304 -9 1993 122 39 0 chr15 29574158 29574444 -56121310 + AluSg SINE Alu 1 297 -13 2617 56 0 0 chr15 29574444 29574746 -56121008 + AluY SINE Alu 1 302 -9 1979 169 0 0 chr15 29574754 29575062 -56120692 - AluSx SINE Alu -4 308 1 567 254 80 107 chr15 29575229 29575269 -56120485 + L1MC4a LINE L1 5670 5710 -2098 2261 98 3 0 chr15 29575269 29575598 -56120156 - AluSp SINE Alu 0 330 1 2345 94 0 3 chr15 29575604 29575902 -56119852 - AluSx SINE Alu -15 297 1 567 254 80 107 chr15 29575902 29576266 -56119488 + L1MC4a LINE L1 5715 6071 -1737 37 23 0 0 chr15 29576280 29576324 -56119430 + AT_rich Low_complexity Low_complexity 1 44 0 2027 148 0 0 chr15 29576733 29577031 -56118723 - AluJb SINE Alu -14 298 1 205 182 11 80 chr15 29577421 29577509 -56118245 + A-rich Low_complexity Low_complexity 3 84 0 1915 139 7 13 chr15 29578619 29578920 -56116834 + AluJb SINE Alu 1 299 -13 308 201 120 19 chr15 29578958 29579062 -56116692 - L1MA10 LINE L1 -4 6158 6049 2143 139 0 0 chr15 29580177 29580480 -56115274 - AluSx SINE Alu -9 303 1 2122 98 0 21 chr15 29580729 29581015 -56114739 + AluSx SINE Alu 1 280 -32 358 282 188 0 chr15 29581262 29581432 -56114322 - L3 LINE CR1 -63 1514 1313 215 143 41 0 chr15 29581571 29581620 -56114134 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2190 103 0 35 chr15 29581880 29582191 -56113563 + AluSx SINE Alu 1 300 -12 21 82 0 0 chr15 29582842 29582891 -56112863 + AT_rich Low_complexity Low_complexity 1 49 0 2041 107 37 23 chr15 29583071 29583370 -56112384 + AluSx SINE Alu 1 303 -9 2281 106 0 20 chr15 29583888 29584191 -56111563 + AluSx SINE Alu 1 297 -15 2176 92 14 3 chr15 29584567 29584851 -56110903 + AluSx SINE Alu 1 287 -25 2313 75 7 0 chr15 29584865 29585159 -56110595 + AluY SINE Alu 1 296 -15 404 81 23 105 chr15 29585179 29585265 -56110489 + AluSg/x SINE Alu 217 295 -17 191 260 78 73 chr15 29585551 29585748 -56110006 - MIR SINE MIR -33 229 30 219 239 23 11 chr15 29586071 29586159 -56109595 + (CCG)n Simple_repeat Simple_repeat 1 89 0 1320 234 70 0 chr15 29587008 29587307 -56108447 + Charlie1 DNA MER1_type 1 320 -2441 1122 185 33 65 chr15 29587514 29587790 -56107964 + LTR43 LTR ERV1 195 461 -141 4196 174 156 104 chr15 29587879 29588112 -56107642 + Charlie1 DNA MER1_type 307 527 -2234 2267 93 14 0 chr15 29588112 29588402 -56107352 - AluSx SINE Alu -18 294 1 4196 174 156 104 chr15 29588402 29588429 -56107325 + Charlie1 DNA MER1_type 527 551 -2210 2228 108 0 3 chr15 29588429 29588735 -56107019 - AluSg SINE Alu -5 305 1 4196 174 156 104 chr15 29588735 29588756 -56106998 + Charlie1 DNA MER1_type 551 569 -2192 2148 108 7 20 chr15 29588756 29588891 -56106863 + AluSx SINE Alu 3 138 -174 1964 115 30 7 chr15 29588891 29589186 -56106568 + AluSg SINE Alu 1 302 -8 2148 108 7 20 chr15 29589186 29589345 -56106409 + AluSx SINE Alu 138 293 -19 4196 174 156 104 chr15 29589345 29589967 -56105787 + Charlie1 DNA MER1_type 569 1158 -1603 2095 122 7 23 chr15 29589967 29590270 -56105484 + AluSx SINE Alu 1 298 -14 4196 174 156 104 chr15 29590270 29590694 -56105060 + Charlie1 DNA MER1_type 1158 1559 -1202 2431 91 3 0 chr15 29590694 29591003 -56104751 + AluSq SINE Alu 1 310 -3 4196 174 156 104 chr15 29591003 29591080 -56104674 + Charlie1 DNA MER1_type 1559 1631 -1130 2344 84 0 3 chr15 29591080 29591379 -56104375 + AluY SINE Alu 1 298 -13 2651 42 3 0 chr15 29591379 29591688 -56104066 + AluY SINE Alu 1 310 -1 4196 174 156 104 chr15 29591688 29591780 -56103974 + Charlie1 DNA MER1_type 1630 1887 -874 1132 173 97 59 chr15 29591780 29592274 -56103480 - MER34B LTR ERV1 0 565 1 * 1413 194 39 0 chr15 29592274 29592555 -56103199 + Charlie1 DNA MER1_type 1886 2177 -584 2242 124 87 3 chr15 29592562 29592917 -56102837 - LTR26B LTR ERV1 0 531 147 1037 121 0 34 chr15 29592929 29593078 -56102676 + AluSq/x SINE Alu 1 144 -169 2411 90 10 0 chr15 29593078 29593378 -56102376 + AluSx SINE Alu 1 303 -9 1203 112 0 0 chr15 29593380 29593549 -56102205 - LTR26B LTR ERV1 -362 169 1 1160 176 105 40 chr15 29593559 29593757 -56101997 + Charlie1 DNA MER1_type 2195 2424 -337 1665 209 118 32 chr15 29593757 29594222 -56101532 + MLT1D LTR MaLR 1 505 0 1160 176 105 40 chr15 29594222 29594346 -56101408 + Charlie1 DNA MER1_type 2424 2538 -223 431 228 13 0 chr15 29594458 29594537 -56101217 - MER2 DNA MER2_type -264 81 2 697 193 25 97 chr15 29594537 29594606 -56101148 + Charlie1 DNA MER1_type 2540 2612 -149 2046 127 23 3 chr15 29594606 29594906 -56100848 - AluSq SINE Alu -7 306 1 697 193 25 97 chr15 29594906 29595074 -56100680 + Charlie1 DNA MER1_type 2612 2760 -1 303 357 13 26 chr15 29595513 29595667 -56100087 - MIR3 SINE MIR -6 202 51 2157 130 0 7 chr15 29596012 29596320 -56099434 + AluSx SINE Alu 1 306 -6 2347 91 7 0 chr15 29596328 29596637 -56099117 + AluSp SINE Alu 1 311 -2 210 367 37 55 chr15 29597762 29597788 -56097966 + L2 LINE L2 2825 2850 -422 2291 103 0 10 chr15 29597788 29598100 -56097654 - AluSq SINE Alu -4 309 1 2340 104 3 0 chr15 29598100 29598398 -56097356 - AluSx SINE Alu -13 299 1 210 367 37 55 chr15 29598398 29598588 -56097166 + L2 LINE L2 2848 3038 -234 315 193 42 84 chr15 29598754 29598873 -56096881 + L1ME4a LINE L1 5836 5949 -172 382 228 73 37 chr15 29598901 29599037 -56096717 + L2 LINE L2 3161 3301 -12 426 255 43 12 chr15 29599047 29599208 -56096546 + L1ME4a LINE L1 5956 6121 0 2490 57 7 3 chr15 29599466 29599763 -56095991 - AluY SINE Alu -13 298 1 7182 114 23 39 chr15 29599927 29601335 -56094419 - THE1B-int LTR MaLR -322 1329 1 2221 113 51 25 chr15 29601335 29601690 -56094064 - THE1B LTR MaLR 0 364 1 235 258 135 11 chr15 29601690 29601779 -56093975 - L2 LINE L2 -2 3270 3171 1034 124 0 0 chr15 29601784 29601944 -56093810 - AluSg/x SINE Alu 0 305 146 2406 98 3 0 chr15 29601951 29602256 -56093498 - AluSq SINE Alu -7 306 1 1436 115 99 12 chr15 29602308 29602560 -56093194 - LTR65 LTR ERV1 -5 664 391 889 279 60 28 chr15 29602560 29603120 -56092634 + L1MEc LINE L1 1689 2269 -4127 1855 153 3 20 chr15 29603120 29603421 -56092333 + AluJo SINE Alu 1 296 -16 4362 204 71 40 chr15 29603427 29603764 -56091990 - L1M4 LINE L1 -2255 3891 3566 862 165 0 0 chr15 29603764 29603897 -56091857 - FLAM_C SINE Alu 0 133 1 4362 204 71 40 chr15 29603897 29604319 -56091435 - L1M4 LINE L1 -2580 3566 3159 2471 68 3 0 chr15 29604319 29604613 -56091141 - AluY SINE Alu -14 297 3 4362 204 71 40 chr15 29604613 29604670 -56091084 - L1M4 LINE L1 -2987 3159 3105 2148 100 0 37 chr15 29604670 29604970 -56090784 - AluSg SINE Alu -20 290 2 1991 141 6 10 chr15 29604973 29605285 -56090469 - AluSq SINE Alu -2 311 1 4362 204 71 40 chr15 29605285 29605823 -56089931 - L1M4 LINE L1 -3042 3104 2489 2103 119 11 0 chr15 29605838 29606123 -56089631 - AluSx SINE Alu -23 289 2 261 57 0 0 chr15 29606139 29606174 -56089580 + (T)n Simple_repeat Simple_repeat 1 35 0 4253 187 40 57 chr15 29606183 29606308 -56089446 + L1MB8 LINE L1 4490 4616 -1562 1459 223 3 26 chr15 29606308 29606617 -56089137 + AluJo SINE Alu 1 302 -10 4253 187 40 57 chr15 29606617 29607037 -56088717 + L1MB8 LINE L1 4616 5042 -1136 2467 67 3 7 chr15 29607037 29607337 -56088417 + AluY SINE Alu 1 299 -12 4253 187 40 57 chr15 29607337 29608509 -56087245 + L1MB8 LINE L1 5042 6177 -1 2432 81 0 0 chr15 29608984 29609282 -56086472 - AluSc SINE Alu -11 298 1 1798 129 116 6 chr15 29610256 29610567 -56085187 - MER47A DNA MER2_type -2 364 20 298 208 0 0 chr15 29610890 29610943 -56084811 - MER7A DNA MER2_type 0 346 294 2009 133 6 47 chr15 29610944 29611266 -56084488 - MER1B DNA MER1_type 0 339 31 1637 144 23 52 chr15 29611274 29611329 -56084425 - MER7A DNA MER2_type -2743 295 240 2356 61 4 0 chr15 29611329 29611647 -56084107 + AluY SINE Alu 1 319 0 1637 144 23 52 chr15 29611647 29611871 -56083883 - MER7A DNA MER2_type -2798 240 24 2534 72 3 0 chr15 29611871 29612178 -56083576 + AluSp SINE Alu 1 308 -5 1637 144 23 52 chr15 29612178 29612202 -56083552 - MER7A DNA MER2_type -3014 24 1 199 250 45 57 chr15 29612705 29612793 -56082961 + MIR SINE MIR 103 189 -73 540 266 145 25 chr15 29612901 29613142 -56082612 + LTR33 LTR ERVL 2 271 -250 1562 157 93 11 chr15 29613158 29613426 -56082328 - AluJo SINE Alu -11 301 12 858 234 6 0 chr15 29613463 29613630 -56082124 + MER5A DNA MER1_type 21 188 -1 333 239 37 18 chr15 29613662 29613771 -56081983 + LTR33 LTR ERVL 370 480 -41 2448 97 3 0 chr15 29614686 29614995 -56080759 - AluSx SINE Alu -2 310 1 24 0 0 0 chr15 29615123 29615147 -56080607 + AT_rich Low_complexity Low_complexity 1 24 0 374 0 22 0 chr15 29615160 29615206 -56080548 + (CA)n Simple_repeat Simple_repeat 1 47 0 239 128 0 0 chr15 29615451 29615490 -56080264 + MIR SINE MIR 74 112 -150 370 306 101 5 chr15 29615585 29615784 -56079970 - MIR SINE MIR -15 247 30 255 290 232 5 chr15 29615841 29616065 -56079689 - L3 LINE CR1 -206 1371 1097 1139 195 178 10 chr15 29616086 29616384 -56079370 - L1ME3A LINE L1 -15 6155 5808 2525 140 7 5 chr15 29616394 29616808 -56078946 - L1MB3 LINE L1 0 6183 5769 2261 97 0 20 chr15 29616819 29617118 -56078636 - AluSx SINE Alu -15 297 5 342 245 29 0 chr15 29617380 29617482 -56078272 + MIR3 SINE MIR 101 205 -3 1955 112 45 0 chr15 29618174 29618478 -56077276 - AluSx SINE Alu 0 316 1 2281 93 33 3 chr15 29618740 29619040 -56076714 - AluSc SINE Alu 0 309 1 5286 78 38 28 chr15 29619150 29619563 -56076191 + MER4E LTR ERV1 1 427 -339 2536 74 3 3 chr15 29619563 29619873 -56075881 - AluSp SINE Alu -3 310 1 5286 78 38 28 chr15 29619873 29620217 -56075537 + MER4E LTR ERV1 427 766 0 4990 124 15 58 chr15 29620217 29621064 -56074690 + MER4E-int LTR ERV1 1 811 -5947 1944 205 38 23 chr15 29622969 29623470 -56072284 + MER89-int LTR ERV1 129 585 -4062 380 304 57 58 chr15 29623866 29624481 -56071273 + MER89-int LTR ERV1 3118 3731 -3070 5651 57 19 27 chr15 29627176 29627760 -56067994 + MER4E LTR ERV1 2 581 -185 2180 107 4 0 chr15 29627760 29628063 -56067691 - AluSx SINE Alu 0 304 1 5651 57 19 27 chr15 29628063 29628248 -56067506 + MER4E LTR ERV1 581 766 0 28 48 0 0 chr15 29628322 29628364 -56067390 + AT_rich Low_complexity Low_complexity 1 42 0 262 348 30 30 chr15 29629399 29629563 -56066191 + MIR SINE MIR 49 212 -50 373 327 71 0 chr15 29629597 29629710 -56066044 - MIR3 SINE MIR -45 163 43 206 271 29 57 chr15 29630297 29630367 -56065387 + L3 LINE CR1 1503 1570 -7 2305 97 13 0 chr15 29630528 29630836 -56064918 + AluSx SINE Alu 1 312 0 2131 150 19 11 chr15 29632036 29632395 -56063359 - MLT1A1 LTR MaLR 0 365 4 692 220 82 69 chr15 29632638 29632870 -56062884 - L2 LINE L2 -5 3308 3074 1205 144 0 11 chr15 29632938 29633118 -56062636 + FRAM SINE Alu 1 170 -6 896 249 42 117 chr15 29633155 29633612 -56062142 - MLT1G LTR MaLR -131 437 1 1507 268 62 72 chr15 29633620 29634379 -56061375 - L2 LINE L2 -261 3052 2303 675 280 119 19 chr15 29634570 29634806 -56060948 + MIR SINE MIR 3 261 -1 813 269 113 45 chr15 29635415 29635484 -56060270 - L2 LINE L2 -1975 1339 1276 2203 100 0 19 chr15 29635484 29635793 -56059961 + AluSx SINE Alu 1 303 -9 813 269 113 45 chr15 29635793 29636120 -56059634 - L2 LINE L2 -2038 1276 916 2158 92 11 3 chr15 29636138 29636420 -56059334 - AluSc SINE Alu -2 307 24 319 295 125 30 chr15 29637608 29637808 -56057946 + MIR SINE MIR 2 220 -42 2591 72 0 0 chr15 29638544 29638851 -56056903 + AluY SINE Alu 1 307 -4 723 87 0 0 chr15 29638853 29638957 -56056797 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr15 29638956 29638981 -56056773 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 2248 104 0 7 chr15 29640354 29640661 -56055093 + AluSx SINE Alu 1 305 -7 753 154 43 0 chr15 29640883 29641000 -56054754 + FLAM_A SINE Alu 1 122 -11 255 93 0 0 chr15 29641312 29641355 -56054399 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2172 100 0 4 chr15 29641355 29641636 -56054118 - AluSx SINE Alu -32 280 1 1064 184 11 0 chr15 29641638 29641823 -56053931 - AluSg/x SINE Alu 0 312 126 2079 83 4 0 chr15 29641862 29642114 -56053640 + AluSp SINE Alu 1 253 -60 1569 145 44 98 chr15 29642163 29642549 -56053205 + MLT1A1 LTR MaLR 1 365 0 343 295 11 0 chr15 29642619 29642714 -56053040 + L1MEd LINE L1 80 175 -5944 386 346 45 39 chr15 29642748 29642927 -56052827 - MER91A DNA MER1_type -16 180 1 2588 151 31 19 chr15 29643064 29643547 -56052207 + L1MB3 LINE L1 5685 6173 -10 2267 103 0 3 chr15 29643549 29643851 -56051903 - AluSg SINE Alu -9 301 1 29 47 0 0 chr15 29643856 29643899 -56051855 + AT_rich Low_complexity Low_complexity 1 43 0 284 222 22 22 chr15 29644228 29644318 -56051436 + L1MEd LINE L1 636 725 -5394 1051 296 94 19 chr15 29644348 29644818 -56050936 + LTR33 LTR ERVL 9 513 -8 425 266 98 80 chr15 29644850 29644965 -56050789 + L1MEd LINE L1 993 1104 -1386 2200 112 3 0 chr15 29644965 29645259 -56050495 - AluSq SINE Alu -18 295 1 425 266 98 80 chr15 29645259 29645293 -56050461 + L1MEd LINE L1 1104 1136 -1354 1776 141 36 36 chr15 29645293 29645598 -56050156 + AluJb SINE Alu 1 305 -7 425 266 98 80 chr15 29645598 29645774 -56049980 + L1MEd LINE L1 1136 1322 -1168 1583 195 122 3 chr15 29645775 29646159 -56049595 - MER63B DNA MER1_type -6 430 1 3747 237 48 20 chr15 29646315 29647540 -56048214 + L1M4 LINE L1 3144 4403 -1743 1778 112 0 8 chr15 29647567 29647816 -56047938 - AluSq SINE Alu 0 313 67 1838 194 72 16 chr15 29647820 29648206 -56047548 + MLT2B1 LTR ERVL 63 470 -50 1568 220 3 0 chr15 29648221 29648553 -56047201 + MLT-int LTR MaLR 1 333 -1402 5775 142 10 36 chr15 29648556 29649660 -56046094 - L1PB2 LINE L1 -3 6148 5017 2382 64 0 0 chr15 29649660 29649963 -56045791 - AluY SINE Alu 0 303 1 5775 142 10 36 chr15 29649963 29650570 -56045184 - L1PB2 LINE L1 -1134 5017 4493 2063 98 8 0 chr15 29650570 29650836 -56044918 - AluSq SINE Alu -45 268 1 5775 142 10 36 chr15 29650836 29650932 -56044822 - L1PB2 LINE L1 -1658 4493 4396 1412 116 0 20 chr15 29650939 29651177 -56044577 - AluSg/x SINE Alu 0 321 88 4104 177 15 47 chr15 29651177 29651722 -56044032 - L1PB2 LINE L1 -1729 4417 3919 2182 107 31 0 chr15 29651722 29652012 -56043742 - AluSx SINE Alu -13 299 1 4104 177 15 47 chr15 29652012 29652481 -56043273 - L1PB2 LINE L1 -2227 3919 3436 527 221 0 0 chr15 29652482 29652586 -56043168 + MLT-int LTR MaLR 320 423 -1312 2172 129 0 0 chr15 29652599 29652901 -56042853 + AluSx SINE Alu 11 312 0 250 62 62 21 chr15 29652912 29652960 -56042794 + GA-rich Low_complexity Low_complexity 5 54 0 2012 115 10 23 chr15 29652985 29653289 -56042465 - AluSq SINE Alu -13 300 1 1231 212 7 33 chr15 29653289 29653595 -56042159 + MLT1A1-int LTR MaLR 435 732 -639 2333 73 3 16 chr15 29653604 29653919 -56041835 + AluY SINE Alu 1 311 0 234 132 0 0 chr15 29653923 29653961 -56041793 + MLT1A1-int LTR MaLR 819 856 -515 2072 216 30 17 chr15 29654251 29654719 -56041035 + MLT1A1-int LTR MaLR 1262 1735 0 1732 175 8 38 chr15 29654719 29655084 -56040670 + MLT1A1 LTR MaLR 1 354 -11 5154 185 47 24 chr15 29655089 29655417 -56040337 + L1MC1 LINE L1 4415 4734 -1599 2418 77 7 0 chr15 29655417 29655715 -56040039 + AluSx SINE Alu 1 300 -12 5154 185 47 24 chr15 29655715 29656119 -56039635 + L1MC1 LINE L1 4734 5127 -1206 2116 125 0 3 chr15 29656119 29656404 -56039350 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 29656404 29656435 -56039319 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5154 185 47 24 chr15 29656445 29657137 -56038617 + L1MC1 LINE L1 5127 5890 -443 9191 97 11 9 chr15 29657137 29658421 -56037333 + HSMAR1 DNA Mariner 1 1287 0 5154 185 47 24 chr15 29658421 29658785 -56036969 + L1MC1 LINE L1 5890 6244 -89 2289 114 0 0 chr15 29658806 29659103 -56036651 - AluSq SINE Alu -16 297 1 423 0 0 0 chr15 29659154 29659201 -56036553 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 364 259 6 82 chr15 29659314 29659375 -56036379 + L1MC4 LINE L1 6952 7016 -1026 1836 162 10 7 chr15 29659375 29659678 -56036076 + AluJb SINE Alu 1 304 -8 364 259 6 82 chr15 29659678 29659774 -56035980 + L1MC4 LINE L1 7016 7097 -945 569 223 54 22 chr15 29659814 29660038 -56035716 + L1MC5 LINE L1 6993 7223 -738 245 314 33 33 chr15 29660062 29660215 -56035539 + L1MC4a LINE L1 7244 7396 -412 1990 127 40 0 chr15 29660390 29660690 -56035064 - AluSx SINE Alu 0 312 1 229 261 0 22 chr15 29660700 29660792 -56034962 - L1MC4 LINE L1 -1339 6703 6614 240 167 0 0 chr15 29660792 29660840 -56034914 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 267 12 0 chr15 29660843 29660929 -56034825 + L1MC4 LINE L1 6615 6701 -1341 230 264 23 0 chr15 29660890 29660977 -56034777 - L1MC4 LINE L1 -1340 6702 6614 * 306 245 0 82 chr15 29660993 29661091 -56034663 + L1MC4 LINE L1 6614 6703 -1339 240 234 130 0 chr15 29661130 29661207 -56034547 - L1MC4 LINE L1 -1342 6700 6614 * 263 181 83 0 chr15 29661138 29661210 -56034544 + L1MC4 LINE L1 6615 6692 -1350 226 167 48 0 chr15 29661244 29661286 -56034468 + MER20 DNA MER1_type 1 44 -175 489 254 105 49 chr15 29661377 29661655 -56034099 + L1MC5 LINE L1 7501 7809 -152 2234 121 0 0 chr15 29661655 29661952 -56033802 + AluSx SINE Alu 1 297 -15 489 254 105 49 chr15 29661952 29662063 -56033691 + L1MC5 LINE L1 7809 7912 -49 2445 25 0 7 chr15 29662095 29662375 -56033379 + AluY SINE Alu 22 299 -12 1559 185 35 78 chr15 29663129 29663223 -56032531 + MLT1C LTR MaLR 1 98 -369 1701 94 75 130 chr15 29663223 29663554 -56032200 + AluSp SINE Alu 1 313 0 1559 185 35 78 chr15 29663554 29663772 -56031982 + MLT1C LTR MaLR 98 287 -180 2179 115 7 0 chr15 29663772 29664077 -56031677 + AluSx SINE Alu 2 308 -4 1559 185 35 78 chr15 29664077 29664250 -56031504 + MLT1C LTR MaLR 287 466 -1 2325 88 0 3 chr15 29664559 29664855 -56030899 - AluSc SINE Alu -8 301 7 356 148 0 0 chr15 29664865 29664919 -56030835 - MER5B DNA MER1_type -124 54 1 2244 94 0 29 chr15 29664923 29665232 -56030522 + AluSx SINE Alu 1 300 -12 1942 95 7 3 chr15 29665400 29665683 -56030071 - L1PB2 LINE L1 -3 6148 5865 313 306 110 58 chr15 29665965 29666138 -56029616 + MIR SINE MIR 10 191 -71 2333 91 7 0 chr15 29666406 29666703 -56029051 + AluSq SINE Alu 1 299 -14 332 247 105 40 chr15 29666733 29666980 -56028774 + L1ME4a LINE L1 5855 6117 -4 1951 154 3 3 chr15 29667060 29667346 -56028408 + AluJb SINE Alu 3 288 -24 1202 316 116 30 chr15 29667473 29667938 -56027816 + L3 LINE CR1 117 650 -927 2381 93 0 3 chr15 29667938 29668239 -56027515 - AluSg SINE Alu -10 300 1 1202 316 116 30 chr15 29668239 29668396 -56027358 + L3 LINE CR1 650 792 -785 237 247 130 0 chr15 29668410 29668487 -56027267 + L3 LINE CR1 1329 1415 -162 298 274 57 8 chr15 29668863 29668987 -56026767 - LTR67 LTR ERVL -3 554 425 249 209 0 0 chr15 29669985 29670052 -56025702 + (TA)n Simple_repeat Simple_repeat 2 68 0 383 275 55 0 chr15 29670185 29670327 -56025427 - L1ME LINE L1 -540 5581 5434 1077 166 50 55 chr15 29670463 29670782 -56024972 + MER33 DNA MER1_type 1 308 -16 262 220 85 0 chr15 29670956 29671015 -56024739 - MER91B DNA MER1_type -126 64 1 22 0 0 0 chr15 29671094 29671116 -56024638 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 153 88 chr15 29672469 29672901 -56022853 - L1MDa LINE L1 -4480 2060 1601 1256 121 0 0 chr15 29873667 29873841 -55821913 - AluSq SINE Alu -3 310 137 1972 124 39 0 chr15 29873864 29874147 -55821607 + AluSq SINE Alu 1 294 -19 613 122 0 0 chr15 29874180 29874270 -55821484 + AluJ/FLAM SINE Alu 7 96 -216 * 711 183 8 15 chr15 29874265 29874396 -55821358 + FLAM_C SINE Alu 7 136 -7 319 328 57 26 chr15 29874452 29874681 -55821073 + MIR SINE MIR 1 236 -26 216 0 0 0 chr15 29874878 29874902 -55820852 + (T)n Simple_repeat Simple_repeat 1 24 0 1403 160 5 0 chr15 29874919 29875131 -55820623 - AluSx SINE Alu -77 235 23 2277 104 7 0 chr15 29875138 29875437 -55820317 - AluSp SINE Alu -11 302 2 2382 82 0 0 chr15 29876589 29876882 -55818872 - AluY SINE Alu -18 293 1 828 86 0 132 chr15 29877119 29877271 -55818483 + AluSq/x SINE Alu 3 134 -178 3235 129 168 22 chr15 29877388 29877912 -55817842 - L1MB7 LINE L1 -165 6019 5350 2267 108 0 10 chr15 29877912 29878217 -55817537 - AluSx SINE Alu -10 302 1 3235 129 168 22 chr15 29878217 29878427 -55817327 - L1MB7 LINE L1 -834 5350 5172 534 31 0 0 chr15 29878431 29878495 -55817259 + (ATTG)n Simple_repeat Simple_repeat 2 65 0 1072 197 0 0 chr15 29878495 29878673 -55817081 - AluSg/x SINE Alu -26 284 107 263 229 72 0 chr15 29878752 29878835 -55816919 + (TTGGGG)n Simple_repeat Simple_repeat 5 93 0 801 181 154 36 chr15 29879255 29879326 -55816428 - L1MB7 LINE L1 -1062 5084 5023 2255 90 0 0 chr15 29879326 29879604 -55816150 + AluSx SINE Alu 2 279 -33 801 181 154 36 chr15 29879604 29879753 -55816001 - L1MB7 LINE L1 -1123 5023 4838 632 242 33 13 chr15 29879760 29879913 -55815841 - MLT1F1 LTR MaLR -399 168 13 332 171 26 0 chr15 29879952 29880028 -55815726 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1272 201 31 24 chr15 29880029 29880322 -55815432 - AluSq SINE Alu -18 295 1 1841 163 10 3 chr15 29880368 29880662 -55815092 + AluJb SINE Alu 1 296 -16 183 42 0 0 chr15 29880753 29880777 -55814977 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1955 130 4 0 chr15 29880781 29881057 -55814697 - AluSx SINE Alu -35 277 1 2358 252 159 30 chr15 29881443 29882730 -55813024 + L2 LINE L2 1524 2977 -337 1353 147 15 0 chr15 29882823 29883020 -55812734 - AluSg/x SINE Alu -47 265 66 522 212 134 37 chr15 29883034 29883251 -55812503 + L2 LINE L2 3076 3313 0 379 123 0 0 chr15 29883281 29883338 -55812416 - Alu SINE Alu -2 300 244 314 297 36 36 chr15 29883468 29883606 -55812148 - MIR3 SINE MIR -49 159 22 604 194 60 45 chr15 29884538 29884672 -55811082 - FLAM_C SINE Alu -6 137 2 810 139 0 0 chr15 29885359 29885467 -55810287 + FRAM SINE Alu 21 128 -48 200 360 0 11 chr15 29886132 29886221 -55809533 - MIR SINE MIR -114 148 61 232 143 0 0 chr15 29886257 29886292 -55809462 - Alu SINE Alu -265 35 1 1030 158 49 0 chr15 29886865 29887029 -55808725 + AluSg/x SINE Alu 118 289 -21 1458 108 205 46 chr15 29887315 29887574 -55808180 - AluSx SINE Alu -12 300 1 483 223 8 39 chr15 29888139 29888269 -55807485 + AluSg/x SINE Alu 172 297 -15 214 254 18 0 chr15 29888363 29888418 -55807336 + MER5B DNA MER1_type 122 177 -1 1759 144 31 14 chr15 29888562 29888853 -55806901 - AluSx SINE Alu -16 296 1 222 109 141 62 chr15 29889285 29889349 -55806405 + L2 LINE L2 3203 3271 -1 28 48 0 0 chr15 29891183 29891225 -55804529 + AT_rich Low_complexity Low_complexity 1 42 0 270 0 0 0 chr15 29892253 29892283 -55803471 + (TG)n Simple_repeat Simple_repeat 2 31 0 688 171 18 0 chr15 29892937 29893048 -55802706 - FRAM SINE Alu -39 137 25 404 167 0 0 chr15 29893050 29893116 -55802638 - L1M4 LINE L1 -1273 4873 4808 262 214 71 41 chr15 29893110 29893138 -55802616 - L1M4 LINE L1 -3757 2389 2363 * 1528 168 23 74 chr15 29893138 29893447 -55802307 - AluJo SINE Alu -18 294 2 262 214 71 41 chr15 29893447 29893516 -55802238 - L1M4 LINE L1 -3783 2363 2289 437 302 83 16 chr15 29893570 29893762 -55801992 - L1ME LINE L1 -456 5708 5504 346 259 71 9 chr15 29894398 29894510 -55801244 + MIR3 SINE MIR 15 133 -75 538 321 67 18 chr15 29895357 29895581 -55800173 + MIR SINE MIR 2 236 -26 938 233 155 13 chr15 29895913 29896230 -55799524 + L2 LINE L2 2440 2801 -513 794 257 119 41 chr15 29896288 29896390 -55799364 + L2 LINE L2 2919 3012 -301 1910 60 34 0 chr15 29896390 29896623 -55799131 + AluY SINE Alu 64 304 -7 794 257 119 41 chr15 29896623 29896882 -55798872 + L2 LINE L2 3012 3308 -5 2147 109 21 0 chr15 29898024 29898308 -55797446 - AluSx SINE Alu -22 290 1 1409 151 49 99 chr15 29898328 29898632 -55797122 - AluJo SINE Alu -12 290 2 2148 74 10 30 chr15 29898640 29898936 -55796818 - AluY SINE Alu -21 290 1 960 164 0 13 chr15 29899146 29899298 -55796456 - AluSq/x SINE Alu -162 150 1 201 279 0 0 chr15 29899377 29899420 -55796334 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2254 116 7 3 chr15 29899945 29900255 -55795499 + AluSq SINE Alu 1 311 -2 281 238 87 79 chr15 29900257 29900383 -55795371 - L1ME4a LINE L1 -16 6105 5979 258 279 163 26 chr15 29900475 29900881 -55794873 - L1MC4a LINE L1 -105 6016 5603 477 101 30 0 chr15 29901125 29901224 -55794530 + (TA)n Simple_repeat Simple_repeat 2 103 0 1974 69 80 15 chr15 29901233 29901495 -55794259 - AluSg SINE Alu -31 279 1 2086 141 0 0 chr15 29901732 29902023 -55793731 - AluSx SINE Alu -21 291 1 804 179 11 27 chr15 29902036 29902220 -55793534 - L1MB8 LINE L1 -3 6175 5995 600 352 34 6 chr15 29902626 29902953 -55792801 - L2 LINE L2 -1094 2220 1885 1397 368 3 26 chr15 29903048 29903358 -55792396 - AluY SINE Alu -8 303 1 404 281 143 17 chr15 29903363 29903601 -55792153 + L2 LINE L2 2838 3105 -167 388 219 90 39 chr15 29904577 29904755 -55790999 - L1ME4a LINE L1 -1 6120 5934 397 254 9 86 chr15 29904894 29905114 -55790640 + L2 LINE L2 3079 3281 -32 253 229 16 0 chr15 29905114 29905175 -55790579 - L1MC4a LINE L1 -580 7228 7167 324 183 0 0 chr15 29905919 29905979 -55789775 + MER53 DNA DNA 130 189 0 2137 120 3 3 chr15 29906069 29906360 -55789394 + AluSq SINE Alu 1 291 -22 695 226 106 10 chr15 29906447 29906646 -55789108 + L1MC5 LINE L1 6649 6866 -1095 438 241 8 15 chr15 29906680 29906813 -55788941 + L1MC5 LINE L1 7782 7913 -48 210 154 0 0 chr15 29906943 29906982 -55788772 + (TA)n Simple_repeat Simple_repeat 2 40 0 1899 117 4 0 chr15 29906984 29907241 -55788513 - AluSx SINE Alu -31 281 24 315 380 63 0 chr15 29907420 29907562 -55788192 + HAL1 LINE L1 1127 1277 -1230 218 291 11 34 chr15 29907562 29907741 -55788013 + GA-rich Low_complexity Low_complexity 3 177 0 2356 78 6 34 chr15 29908063 29908385 -55787369 + AluSp SINE Alu 1 313 0 2113 135 3 0 chr15 29909190 29909493 -55786261 - AluSx SINE Alu -8 304 1 2297 94 0 7 chr15 29910469 29910766 -55784988 + AluSp SINE Alu 1 295 -18 2267 85 27 0 chr15 29910771 29911065 -55784689 + AluSp SINE Alu 1 302 -11 347 261 42 25 chr15 29911290 29911450 -55784304 - MLT1J LTR MaLR -279 336 111 282 313 28 21 chr15 29911831 29911975 -55783779 + MIR SINE MIR 112 256 -6 3445 135 47 27 chr15 29912000 29912030 -55783724 + LTR26 LTR ERV1 1 29 -574 2276 86 0 0 chr15 29912030 29912338 -55783416 + AluY SINE Alu 1 308 0 3445 135 47 27 chr15 29912338 29912897 -55782857 + LTR26 LTR ERV1 29 603 0 301 281 151 69 chr15 29912902 29913219 -55782535 + MLT1K LTR MaLR 7 349 -239 393 214 0 0 chr15 29913514 29913584 -55782170 + MER8 DNA MER2_type 160 229 -10 283 270 32 24 chr15 29913681 29913807 -55781947 + L2 LINE L2 2004 2130 -1184 2125 119 24 0 chr15 29913870 29914163 -55781591 - AluSx SINE Alu -12 300 1 1064 272 176 26 chr15 29914187 29914966 -55780788 + L2 LINE L2 2346 3235 -78 4130 235 70 65 chr15 29915755 29916664 -55779090 + HAL1 LINE L1 656 1578 -929 656 55 44 0 chr15 29916664 29916755 -55778999 + L1PB1 LINE L1 6056 6150 -1 4130 235 70 65 chr15 29916755 29917553 -55778201 + HAL1 LINE L1 1578 2371 -136 1997 111 4 0 chr15 29917561 29917832 -55777922 + AluY SINE Alu 33 304 -7 243 272 33 11 chr15 29918190 29918282 -55777472 + MER5B DNA MER1_type 11 104 -74 2289 121 0 0 chr15 29918301 29918608 -55777146 - AluSx SINE Alu -5 307 1 1799 94 12 16 chr15 29918617 29918872 -55776882 - AluY SINE Alu -3 308 55 935 200 0 67 chr15 29918881 29919151 -55776603 - AluY SINE Alu -15 296 45 513 213 43 111 chr15 29920340 29920575 -55775179 - AluY SINE Alu -91 220 2 2032 123 0 66 chr15 29920649 29920981 -55774773 + AluSx SINE Alu 1 310 -2 193 235 78 0 chr15 29921903 29921954 -55773800 - MIR SINE MIR -4 258 204 229 273 0 0 chr15 29923167 29923222 -55772532 + L1MB7 LINE L1 5512 5566 -608 2975 180 55 2 chr15 29923758 29924340 -55771414 + L1MB7 LINE L1 5553 6165 -19 23 33 0 0 chr15 29924319 29924349 -55771405 + AT_rich Low_complexity Low_complexity 1 30 0 2199 125 0 3 chr15 29924387 29924690 -55771064 - AluSx SINE Alu -10 302 1 1789 113 132 0 chr15 29924732 29924998 -55770756 + AluSx SINE Alu 1 301 -1 332 136 136 0 chr15 29925829 29925888 -55769866 + L1MC4 LINE L1 6771 6837 -1205 * 422 171 57 26 chr15 29925887 29926017 -55769737 - L1MC4 LINE L1 -806 7036 6873 2317 36 0 4 chr15 29926946 29927266 -55768488 + AluY SINE Alu 1 319 0 196 315 0 0 chr15 29927740 29927794 -55767960 - MIR SINE MIR -63 145 92 611 241 49 38 chr15 29927893 29928159 -55767595 - AluSc SINE Alu -7 302 34 587 147 0 92 chr15 29929373 29929449 -55766305 - AluY SINE Alu -111 200 135 2108 107 0 3 chr15 29929449 29929747 -55766007 - AluSg SINE Alu -13 297 1 587 147 0 92 chr15 29929747 29929779 -55765975 - AluY SINE Alu -176 135 102 1685 184 19 0 chr15 29930053 29930368 -55765386 + MER73 LTR ERVL 324 644 0 1757 158 20 13 chr15 29930535 29930839 -55764915 + AluJb SINE Alu 1 306 -6 289 317 118 0 chr15 29930840 29931002 -55764752 + MIR SINE MIR 8 197 -65 983 92 0 0 chr15 29931184 29931314 -55764440 - AluSg SINE Alu -180 130 1 767 235 235 22 chr15 29931676 29931832 -55763922 + L2 LINE L2 1317 1438 -1876 939 189 44 84 chr15 29931832 29932081 -55763673 + MER8 DNA MER2_type 1 239 0 767 235 235 22 chr15 29932081 29932247 -55763507 + L2 LINE L2 1438 1708 -1606 1093 133 0 12 chr15 29932261 29932434 -55763320 + AluJo SINE Alu 1 171 -141 1575 151 4 11 chr15 29932749 29933027 -55762727 + AluSx SINE Alu 28 303 -9 235 210 0 32 chr15 29933027 29933089 -55762665 + L1MC5 LINE L1 7848 7907 -54 1058 246 47 19 chr15 29933098 29933419 -55762335 + L2 LINE L2 1698 2027 -1287 1650 132 0 83 chr15 29933770 29933940 -55761814 - AluJb SINE Alu -12 300 168 1783 148 10 3 chr15 29933940 29934231 -55761523 - AluJb SINE Alu -19 293 1 1650 132 0 83 chr15 29934231 29934387 -55761367 - AluJb SINE Alu -144 168 1 297 228 54 33 chr15 29934448 29934540 -55761214 - L2 LINE L2 -40 3232 3139 458 120 13 13 chr15 29934703 29934778 -55760976 - AluSg/x SINE Alu -30 282 208 574 117 0 0 chr15 29935109 29935186 -55760568 - AluSg/x SINE Alu -30 280 204 810 83 9 0 chr15 29935262 29935371 -55760383 + L1PA8A LINE L1 5994 6103 -28 2190 93 0 16 chr15 29935511 29935824 -55759930 + AluSx SINE Alu 1 308 -4 402 309 40 13 chr15 29937192 29937341 -55758413 - MLT1K LTR MaLR -418 170 18 873 110 39 0 chr15 29937483 29937610 -55758144 + AluJb SINE Alu 1 132 -180 836 193 20 0 chr15 29937678 29937828 -55757926 - AluSg/x SINE Alu -39 271 119 731 180 16 0 chr15 29937882 29938004 -55757750 - AluJb SINE Alu -187 125 2 1930 116 0 0 chr15 29938013 29938281 -55757473 - AluSx SINE Alu -24 288 21 454 318 127 45 chr15 29938685 29938706 -55757048 + L1MC4a LINE L1 5463 5481 -2327 1938 125 28 0 chr15 29938706 29938995 -55756759 + AluSx SINE Alu 1 297 -15 454 318 127 45 chr15 29938995 29939413 -55756341 + L1MC4a LINE L1 5481 5938 -1870 2102 110 3 0 chr15 29940815 29941107 -55754647 - AluSq SINE Alu -20 293 1 1822 109 42 0 chr15 29941429 29941548 -55754206 + AluSc SINE Alu 1 114 -195 405 0 0 0 chr15 29941548 29941593 -55754161 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 109 42 0 chr15 29941593 29941757 -55753997 + AluSc SINE Alu 114 296 -13 33 0 0 0 chr15 29943180 29943213 -55752541 + GC_rich Low_complexity Low_complexity 1 33 0 1911 57 0 8 chr15 29943354 29943601 -55752153 - AluY SINE Alu -66 245 1 422 143 4 0 chr15 29943604 29943679 -55752075 + LTR41 LTR ERVL 453 523 0 427 254 64 0 chr15 29943692 29943802 -55751952 + HERVL LTR ERVL 2854 2970 -2684 2041 173 9 6 chr15 29943806 29944152 -55751602 - MLT1A1 LTR MaLR 0 365 19 4459 264 68 6 chr15 29944161 29945355 -55750399 + HERVL LTR ERVL 3008 4275 -1489 596 204 46 0 chr15 29945392 29945544 -55750210 + LTR37A LTR ERV1 268 426 0 669 263 105 0 chr15 29945715 29945886 -55749868 + MIR SINE MIR 48 236 -26 2388 181 99 0 chr15 29946059 29946545 -55749209 - L1MB7 LINE L1 -2 6182 5649 1586 113 77 18 chr15 29946830 29946960 -55748794 - L1MA5 LINE L1 -4 6296 6175 2554 133 24 42 chr15 29946960 29947287 -55748467 + MER65A LTR ERV1 1 319 -126 2219 88 0 22 chr15 29947287 29947604 -55748150 - AluY SINE Alu -1 310 1 2554 133 24 42 chr15 29947604 29947729 -55748025 + MER65A LTR ERV1 319 445 0 1586 113 77 18 chr15 29947729 29947872 -55747882 - L1MA5 LINE L1 -125 6175 6007 1042 172 67 50 chr15 29948637 29948875 -55746879 + Charlie1 DNA MER1_type 1 242 -2519 736 133 15 52 chr15 29948867 29948961 -55746793 + Charlie1 DNA MER1_type 2631 2720 -41 * 2224 79 3 7 chr15 29948961 29949265 -55746489 + AluSp SINE Alu 1 303 -10 736 133 15 52 chr15 29949265 29949305 -55746449 + Charlie1 DNA MER1_type 2720 2760 -1 426 305 0 58 chr15 29949372 29949562 -55746192 + G-rich Low_complexity Low_complexity 1 179 0 305 258 0 43 chr15 29949569 29949694 -55746060 + G-rich Low_complexity Low_complexity 1 119 0 1986 82 27 14 chr15 29951388 29951680 -55744074 - AluY SINE Alu -15 296 1 277 252 36 108 chr15 29952640 29952732 -55743022 + MER110 LTR ERV1 363 443 -48 2164 110 0 0 chr15 29952732 29953031 -55742723 - AluSx SINE Alu -13 299 1 277 252 36 108 chr15 29953031 29953077 -55742677 + MER110 LTR ERV1 443 491 0 234 91 0 0 chr15 29953194 29953227 -55742527 + (A)n Simple_repeat Simple_repeat 1 33 0 376 279 121 55 chr15 29953351 29953516 -55742238 - L3 LINE CR1 -2 1575 1400 233 290 65 28 chr15 29953897 29954004 -55741750 - L2 LINE L2 0 3272 3162 294 280 0 40 chr15 29954198 29954298 -55741456 - L2 LINE L2 -240 3032 2937 2095 105 3 0 chr15 29954474 29954760 -55740994 - AluSx SINE Alu -14 298 12 514 249 226 20 chr15 29955512 29955914 -55739840 - L1ME4a LINE L1 0 6121 5637 2256 62 3 7 chr15 29955995 29956286 -55739468 - AluY SINE Alu -21 290 1 2107 100 7 10 chr15 29957378 29957679 -55738075 - AluSq SINE Alu -13 300 1 256 236 87 31 chr15 29957853 29957980 -55737774 - L1ME4a LINE L1 -2362 5423 5290 301 301 7 52 chr15 29958034 29958187 -55737567 - L1ME4a LINE L1 -889 5257 5112 456 281 148 36 chr15 29958263 29958566 -55737188 + L1ME4a LINE L1 5562 5898 -223 637 274 73 36 chr15 29959147 29959395 -55736359 + MIR SINE MIR 6 262 0 2218 114 0 0 chr15 29959527 29959834 -55735920 - AluSx SINE Alu -1 311 5 389 206 116 48 chr15 29960343 29960489 -55735265 + MER20 DNA MER1_type 63 218 -1 582 198 60 0 chr15 29960505 29960621 -55735133 + MLT1J LTR MaLR 71 193 -318 287 244 154 8 chr15 29961266 29961389 -55734365 - L2 LINE L2 -188 3084 2944 2137 113 0 0 chr15 29961408 29961708 -55734046 - AluSx SINE Alu -12 300 1 1554 144 29 122 chr15 29961734 29962110 -55733644 - MER2 DNA MER2_type -3 341 1 293 247 58 98 chr15 29962450 29962624 -55733130 + L2 LINE L2 2250 2416 -898 1192 217 44 20 chr15 29962629 29962924 -55732830 + LTR40b LTR ERVL 161 462 0 336 333 52 0 chr15 29962924 29963059 -55732695 + L2 LINE L2 2555 2696 -618 1256 152 68 27 chr15 29963060 29963323 -55732431 - AluJb SINE Alu 0 312 39 207 145 26 171 chr15 29963323 29963399 -55732355 + L2 LINE L2 2687 2751 -563 898 232 201 14 chr15 29963440 29963733 -55732021 + L2 LINE L2 2966 3313 0 217 321 66 0 chr15 29964602 29964708 -55731046 + MIR SINE MIR 30 142 -66 181 186 169 17 chr15 29965578 29965637 -55730117 - MIR SINE MIR -123 85 18 378 0 0 0 chr15 29966441 29966483 -55729271 + (CA)n Simple_repeat Simple_repeat 2 43 0 827 65 8 0 chr15 29966653 29966776 -55728978 + (CA)n Simple_repeat Simple_repeat 2 125 0 350 205 60 25 chr15 29967044 29967169 -55728585 - MER5A DNA MER1_type -53 125 4 247 296 70 43 chr15 29967287 29967402 -55728352 - L2 LINE L2 -9 3263 3146 1456 171 32 3 chr15 29967410 29967848 -55727906 + MER110 LTR ERV1 1 484 -7 241 177 65 0 chr15 29967932 29967994 -55727760 - L2 LINE L2 -241 3031 2966 197 288 68 0 chr15 29968086 29968145 -55727609 - L2 LINE L2 -567 2747 2685 1980 107 0 0 chr15 29968733 29969004 -55726750 + AluSx SINE Alu 29 299 -13 603 224 69 65 chr15 29969748 29969763 -55725991 - MIR SINE MIR 0 262 249 1603 161 0 47 chr15 29969763 29970088 -55725666 + AluJo SINE Alu 1 311 0 603 224 69 65 chr15 29970088 29970317 -55725437 - MIR SINE MIR -13 249 16 718 116 20 116 chr15 29972035 29972182 -55723572 - FLAM_C SINE Alu 0 133 1 2112 281 120 30 chr15 29972184 29973332 -55722422 - L1MC4 LINE L1 -7 8035 6785 2112 124 0 0 chr15 29973476 29973782 -55721972 + AluSx SINE Alu 1 306 -6 187 333 12 48 chr15 29974026 29974110 -55721644 + L2 LINE L2 3191 3271 -1 1520 253 61 74 chr15 29975108 29975683 -55720071 + MER77 LTR ERV1 60 601 -4 248 295 33 0 chr15 29975654 29975715 -55720039 + MER21B LTR ERV1 606 668 -195 * 23 54 0 0 chr15 29975807 29975844 -55719910 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr15 29975937 29975959 -55719795 + AT_rich Low_complexity Low_complexity 1 22 0 352 265 52 73 chr15 29975960 29976232 -55719522 + AluJb SINE Alu 1 266 -36 2398 52 0 10 chr15 29977180 29977485 -55718269 - AluY SINE Alu -9 302 1 364 154 7 13 chr15 29977533 29977605 -55718149 - MER110 LTR ERV1 -388 103 1 707 293 27 23 chr15 29977697 29977784 -55717970 - L1ME LINE L1 -302 5819 5734 1591 170 6 56 chr15 29977784 29978107 -55717647 - AluJb SINE Alu -3 309 3 707 293 27 23 chr15 29978107 29978319 -55717435 - L1ME LINE L1 -387 5734 5519 809 148 7 0 chr15 29978388 29978523 -55717231 - FLAM_A SINE Alu -1 141 6 2090 120 13 0 chr15 29978809 29979109 -55716645 - AluSx SINE Alu -8 304 1 199 327 20 50 chr15 29979653 29979754 -55716000 - MIR SINE MIR -68 140 43 233 290 43 11 chr15 29982072 29982165 -55713589 - MARNA DNA Mariner -211 375 280 822 204 80 6 chr15 29983038 29983214 -55712540 + AluJb SINE Alu 122 310 -2 2110 96 0 23 chr15 29983553 29983854 -55711900 - AluSx SINE Alu -18 294 1 1654 144 40 18 chr15 29983865 29984143 -55711611 - AluJb SINE Alu -17 295 12 1661 217 137 19 chr15 29984236 29984719 -55711035 + MLT1F LTR MaLR 1 540 -2 353 252 113 17 chr15 29985688 29985803 -55709951 - MIR SINE MIR -63 145 20 186 343 27 0 chr15 29986223 29986296 -55709458 - MIR3 SINE MIR -26 182 108 3139 226 139 12 chr15 29986658 29987589 -55708165 - L1MC4 LINE L1 -191 7851 6803 1710 149 6 50 chr15 29987679 29988000 -55707754 + AluJb SINE Alu 1 307 -5 2379 60 0 3 chr15 29988164 29988465 -55707289 - AluY SINE Alu -11 300 1 2096 106 3 0 chr15 29988480 29988773 -55706981 - AluSg SINE Alu -16 294 1 339 353 43 22 chr15 29989391 29989530 -55706224 + MIR SINE MIR 8 149 -113 187 298 21 0 chr15 29989587 29989634 -55706120 + L2 LINE L2 3266 3313 0 219 313 101 76 chr15 29990028 29990316 -55705438 - L2 LINE L2 -49 3223 2929 233 318 27 18 chr15 29990470 29990580 -55705174 - L2 LINE L2 -582 2732 2622 505 302 23 23 chr15 29990907 29991172 -55704582 - L1 LINE L1 -2015 4131 3867 1016 185 70 70 chr15 29991178 29991480 -55704274 - AluSx SINE Alu 0 302 1 190 298 124 41 chr15 29991735 29991856 -55703898 + MIR SINE MIR 98 228 -34 280 245 185 20 chr15 29992058 29992209 -55703545 - L1ME4a LINE L1 -11 6110 5935 297 253 60 0 chr15 29992286 29992369 -55703385 - L1ME4a LINE L1 -298 5823 5736 387 195 11 11 chr15 29992399 29992486 -55703268 - L1ME4a LINE L1 -458 5663 5577 362 219 171 11 chr15 29992486 29992628 -55703126 - MIR SINE MIR -5 257 83 834 244 0 30 chr15 29992983 29993213 -55702541 - AluSx SINE Alu -89 223 1 831 50 0 0 chr15 29994368 29994468 -55701286 + HY3 scRNA scRNA 1 100 -1 10509 228 31 29 chr15 29994509 29995553 -55700201 + L1PA11 LINE L1 7 1047 -6537 2087 102 0 22 chr15 29995553 29995868 -55699886 + AluSg SINE Alu 1 308 -2 2107 92 0 31 chr15 29995869 29996186 -55699568 + AluY SINE Alu 2 308 -3 10509 228 31 29 chr15 29996186 29998221 -55697533 + L1PA11 LINE L1 1046 4429 -3155 14035 128 40 6 chr15 29998321 29999012 -55696742 + L1PA11 LINE L1 4439 5104 -2508 2223 112 0 3 chr15 29999012 29999324 -55696430 + AluSq SINE Alu 1 311 -2 14035 128 40 6 chr15 29999324 30000666 -55695088 + L1PA11 LINE L1 5104 6542 -1070 1798 132 54 0 chr15 30000666 30000918 -55694836 + AluSq SINE Alu 1 273 -40 1979 98 0 4 chr15 30000918 30001193 -55694561 + AluSq SINE Alu 40 313 0 1798 132 54 0 chr15 30001193 30001236 -55694518 + AluSq SINE Alu 273 312 -1 14035 128 40 6 chr15 30001236 30002346 -55693408 + L1PA11 LINE L1 6542 7612 0 1799 133 44 0 chr15 30002448 30002741 -55693013 + AluSx SINE Alu 1 306 -6 280 269 118 54 chr15 30002752 30003083 -55692671 + L1ME4a LINE L1 5723 6074 -47 1559 162 56 40 chr15 30003751 30004053 -55691701 - AluJo SINE Alu -5 307 1 1722 125 55 4 chr15 30004123 30004395 -55691359 + AluJo SINE Alu 2 287 -25 781 269 88 72 chr15 30004639 30004879 -55690875 - L2 LINE L2 -1 3312 3077 769 118 17 8 chr15 30004879 30004998 -55690756 - FLAM_C SINE Alu -12 121 2 781 269 88 72 chr15 30004998 30005258 -55690496 - L2 LINE L2 -236 3077 2804 241 304 20 59 chr15 30005340 30005442 -55690312 + MIR SINE MIR 55 152 -56 1775 151 133 3 chr15 30005516 30005861 -55689893 + MLT1D LTR MaLR 1 390 -115 344 241 18 107 chr15 30006016 30006084 -55689670 + MER81 DNA DNA 13 70 -44 1784 134 33 0 chr15 30006084 30006384 -55689370 + AluSx SINE Alu 1 309 0 344 241 18 107 chr15 30006384 30006426 -55689328 + MER81 DNA DNA 70 114 0 573 71 0 24 chr15 30007403 30007488 -55688266 - AluSg1 SINE Alu -216 93 11 2051 123 23 0 chr15 30007541 30007842 -55687912 + AluSx SINE Alu 1 308 -4 460 225 71 6 chr15 30008325 30008460 -55687294 + MIR SINE MIR 21 165 -43 285 31 0 0 chr15 30008468 30008500 -55687254 - AluSq/x SINE Alu -196 107 76 * 417 261 140 76 chr15 30008498 30008807 -55686947 + MLT1J LTR MaLR 240 473 -38 212 227 0 0 chr15 30009834 30009878 -55685876 + (CCG)n Simple_repeat Simple_repeat 2 45 0 21 95 0 0 chr15 30010096 30010159 -55685595 + GC_rich Low_complexity Low_complexity 1 63 0 303 324 0 0 chr15 30010300 30010413 -55685341 - MIR SINE MIR -63 145 33 753 228 62 14 chr15 30010929 30011140 -55684614 - MIR SINE MIR -21 241 21 318 236 42 0 chr15 30011419 30011491 -55684263 + MIR SINE MIR 118 192 -70 2163 105 20 0 chr15 30011499 30011805 -55683949 + AluSx SINE Alu 1 312 0 231 200 17 67 chr15 30011950 30012010 -55683744 + L2 LINE L2 3216 3272 0 24 0 0 0 chr15 30012010 30012034 -55683720 + AT_rich Low_complexity Low_complexity 1 24 0 205 235 12 24 chr15 30012049 30012134 -55683620 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 409 235 144 23 chr15 30012164 30012296 -55683458 + MIR SINE MIR 4 151 -111 1701 125 0 4 chr15 30013416 30013664 -55682090 + AluSx SINE Alu 1 247 -65 361 43 0 0 chr15 30013668 30013714 -55682040 - MADE1 DNA Mariner -34 46 1 677 291 57 29 chr15 30014725 30014969 -55680785 - MIR SINE MIR -10 252 2 425 230 213 23 chr15 30015814 30015988 -55679766 + MIR SINE MIR 8 214 -48 2214 136 27 54 chr15 30016288 30016398 -55679356 + LTR56 LTR ERV1 17 128 -309 396 0 0 0 chr15 30016398 30016442 -55679312 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1860 134 0 0 chr15 30016448 30016723 -55679031 - AluSx SINE Alu -37 275 1 2214 136 27 54 chr15 30016723 30017059 -55678695 + LTR56 LTR ERV1 133 431 -6 253 232 71 10 chr15 30018465 30018564 -55677190 - L1MC/D LINE L1 -2003 5805 5701 769 159 16 104 chr15 30018580 30018762 -55676992 + L1MC/D LINE L1 5511 5676 -508 1890 118 62 0 chr15 30018763 30019051 -55676703 + AluSx SINE Alu 1 306 -6 564 238 107 42 chr15 30019051 30019312 -55676442 - L2 LINE L2 -361 2953 2676 338 326 68 8 chr15 30019689 30019821 -55675933 - MIR SINE MIR -94 168 29 1603 183 25 82 chr15 30019924 30020354 -55675400 + L1MB7 LINE L1 5762 6167 -17 2327 80 0 0 chr15 30020354 30020653 -55675101 - AluY SINE Alu -12 299 1 1603 183 25 82 chr15 30020653 30020671 -55675083 + L1MB7 LINE L1 6167 6184 0 1279 231 106 60 chr15 30020667 30021187 -55674567 + L1ME3 LINE L1 5319 5862 -300 * 21 100 0 0 chr15 30021316 30021386 -55674368 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr15 30023089 30023111 -55672643 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 30023177 30023219 -55672535 + AT_rich Low_complexity Low_complexity 1 42 0 2299 73 3 10 chr15 30023269 30023571 -55672183 + AluSc SINE Alu 1 300 -9 809 142 87 175 chr15 30024654 30025225 -55670529 - Charlie1 DNA MER1_type -4 2757 1 1608 138 17 54 chr15 30026047 30026345 -55669409 - AluJo SINE Alu -25 287 1 278 274 14 0 chr15 30026288 30026361 -55669393 - AluSg/x SINE Alu -109 193 120 284 188 113 25 chr15 30026825 30026905 -55668849 + MIR3 SINE MIR 120 206 -2 304 219 135 0 chr15 30027153 30027237 -55668517 + MIR SINE MIR 25 119 -89 3328 151 27 63 chr15 30027242 30027872 -55667882 + L1MB8 LINE L1 5504 6108 -70 1963 124 3 13 chr15 30027872 30028170 -55667584 - AluSx SINE Alu -17 295 1 3328 151 27 63 chr15 30028170 30028239 -55667515 + L1MB8 LINE L1 6108 6178 0 215 238 0 0 chr15 30028243 30028285 -55667469 + MIR3 SINE MIR 145 186 -22 2050 115 7 7 chr15 30028285 30028581 -55667173 + AluSq SINE Alu 1 296 -17 2128 112 0 0 chr15 30028787 30029114 -55666640 - AluSg SINE Alu 0 310 1 2262 69 3 7 chr15 30029123 30029428 -55666326 - AluY SINE Alu -7 304 1 313 365 71 62 chr15 30029562 30029885 -55665869 + L1MDa LINE L1 12 337 -6203 316 282 24 100 chr15 30030362 30030520 -55665234 + L1MDa LINE L1 906 1075 -5468 1849 123 11 0 chr15 30030520 30030781 -55664973 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr15 30030783 30030806 -55664948 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4798 208 64 34 chr15 30030820 30032323 -55663431 + L1MDa LINE L1 1012 2559 -3981 316 100 0 0 chr15 30032347 30032387 -55663367 + FLAM SINE Alu 85 124 -9 1662 101 0 4 chr15 30032401 30032629 -55663125 + AluSg/x SINE Alu 73 299 -13 3058 69 13 38 chr15 30033104 30033153 -55662601 - L1MA1 LINE L1 -4 6298 6249 1957 128 0 10 chr15 30033153 30033458 -55662296 - AluSx SINE Alu -10 302 1 3058 69 13 38 chr15 30033458 30033572 -55662182 - L1MA1 LINE L1 -53 6249 6134 2264 97 7 0 chr15 30033572 30033880 -55661874 - AluSx SINE Alu -2 310 1 3058 69 13 38 chr15 30033880 30034162 -55661592 - L1MA1 LINE L1 -168 6134 5863 182 303 119 46 chr15 30034714 30034823 -55660931 + L2 LINE L2 3154 3270 -2 376 278 85 80 chr15 30036498 30036614 -55659140 + L1MEd LINE L1 914 1028 -5344 1505 187 34 83 chr15 30036614 30037021 -55658733 + MLT1B LTR MaLR 1 387 -3 376 278 85 80 chr15 30037021 30037086 -55658668 + L1MEd LINE L1 1028 1091 -5281 2223 107 3 3 chr15 30037086 30037396 -55658358 + AluSx SINE Alu 1 310 -2 376 278 85 80 chr15 30037396 30037550 -55658204 + L1MEd LINE L1 1091 1281 -5091 897 260 163 7 chr15 30037834 30038291 -55657463 + L1ME LINE L1 5051 5576 -588 226 297 68 59 chr15 30038501 30038619 -55657135 - MIR3 SINE MIR -2 206 88 1905 156 0 0 chr15 30040203 30040498 -55655256 - AluJb SINE Alu -17 295 1 293 253 43 71 chr15 30041251 30041466 -55654288 + MLT1J LTR MaLR 201 470 -41 754 220 147 0 chr15 30043106 30043297 -55652457 + MER20 DNA MER1_type 1 219 0 638 126 19 3 chr15 30043912 30044028 -55651726 - MLT1D LTR MaLR 0 505 403 2006 159 27 22 chr15 30044983 30045392 -55650362 - L1MB7 LINE L1 0 6184 5774 1066 250 91 77 chr15 30045896 30046461 -55649293 - L1ME4a LINE L1 -78 6043 5466 1509 171 28 21 chr15 30046461 30046747 -55649007 - AluJo SINE Alu -24 288 1 1066 250 91 77 chr15 30046747 30046821 -55648933 - L1ME4a LINE L1 -655 5466 5395 1451 206 99 32 chr15 30046919 30047352 -55648402 + MLT1C LTR MaLR 6 467 0 180 0 0 0 chr15 30047733 30047753 -55648001 + (CAAGG)n Simple_repeat Simple_repeat 3 22 0 180 129 32 0 chr15 30049791 30049822 -55645932 - MER5A DNA MER1_type -128 61 30 1458 119 50 0 chr15 30050154 30050372 -55645382 + MER30 DNA MER1_type 2 230 0 864 214 69 62 chr15 30050401 30050581 -55645173 + MER102b DNA MER1_type 51 235 -1193 1563 176 0 56 chr15 30050581 30050771 -55644983 - AluJb SINE Alu -6 306 140 1846 134 10 26 chr15 30050771 30051076 -55644678 + AluSq SINE Alu 1 300 -13 1563 176 0 56 chr15 30051076 30051209 -55644545 - AluJb SINE Alu -172 140 1 864 214 69 62 chr15 30051209 30051317 -55644437 + MER102b DNA MER1_type 235 341 0 2514 124 0 16 chr15 30052098 30052470 -55643284 + MER47A DNA MER2_type 1 366 0 375 342 120 25 chr15 30052601 30053116 -55642638 - L2 LINE L2 -1178 2136 1564 2053 95 46 0 chr15 30053116 30053401 -55642353 + AluSg SINE Alu 1 298 -12 375 342 120 25 chr15 30053401 30053434 -55642320 - L2 LINE L2 -1750 1564 1536 2040 117 0 0 chr15 30054265 30054569 -55641185 + AluSx SINE Alu 1 304 0 1578 170 18 0 chr15 30054572 30054849 -55640905 + L1MC1 LINE L1 6046 6327 -6 354 313 0 0 chr15 30055499 30055611 -55640143 + (CCAA)n Simple_repeat Simple_repeat 4 115 0 2215 108 0 0 chr15 30056033 30056330 -55639424 + AluSq SINE Alu 1 297 -16 228 241 86 0 chr15 30056826 30056884 -55638870 - MIR SINE MIR -44 218 156 1994 101 11 14 chr15 30057126 30057413 -55638341 + AluSq SINE Alu 1 286 -27 803 87 0 0 chr15 30057527 30057631 -55638123 - AluY SINE Alu -207 104 1 211 308 13 13 chr15 30057838 30057916 -55637838 - MIR3 SINE MIR -22 186 109 2347 68 0 0 chr15 30058282 30058575 -55637179 - AluSg SINE Alu -16 294 2 825 168 68 6 chr15 30058633 30058860 -55636894 - L1MA7 LINE L1 -2 6310 6064 1754 141 4 0 chr15 30059477 30059753 -55636001 + AluJo SINE Alu 1 277 -35 2078 91 7 29 chr15 30060528 30060837 -55634917 - AluSq SINE Alu -5 308 7 2203 103 0 0 chr15 30060961 30061262 -55634492 - AluSx SINE Alu -11 301 1 692 145 11 34 chr15 30062241 30062420 -55633334 + GA-rich Low_complexity Low_complexity 3 177 0 211 218 13 39 chr15 30062444 30062522 -55633232 + A-rich Low_complexity Low_complexity 3 78 0 23 24 0 24 chr15 30063116 30063138 -55632616 + AT_rich Low_complexity Low_complexity 1 23 -17 2764 6 0 6 chr15 30063138 30063451 -55632303 + AluYa5 SINE Alu 1 311 0 23 24 0 24 chr15 30063451 30063469 -55632285 + AT_rich Low_complexity Low_complexity 23 40 0 1096 180 23 18 chr15 30063503 30063720 -55632034 - MER20 DNA MER1_type 0 219 2 194 389 0 14 chr15 30065399 30065471 -55630283 + MER5B DNA MER1_type 13 83 -95 189 329 49 0 chr15 30065504 30065586 -55630168 + MER5A DNA MER1_type 83 168 -21 2158 98 0 7 chr15 30066532 30066838 -55628916 + AluSx SINE Alu 1 304 -8 221 265 44 0 chr15 30066941 30067009 -55628745 - MIR SINE MIR -72 190 120 451 301 83 23 chr15 30067016 30067222 -55628532 - MIR SINE MIR -32 230 16 2349 144 8 11 chr15 30068049 30068430 -55627324 + MLT1B LTR MaLR 11 390 0 207 0 0 0 chr15 30068760 30068783 -55626971 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 390 46 2 37 chr15 30068790 30068851 -55626903 - AluY SINE Alu -14 287 236 1404 179 6 85 chr15 30069145 30069475 -55626279 - AluJb SINE Alu -8 304 1 814 134 15 15 chr15 30069475 30069609 -55626145 - AluJo SINE Alu -177 135 2 219 139 0 0 chr15 30069671 30069707 -55626047 + (A)n Simple_repeat Simple_repeat 1 36 0 620 272 40 29 chr15 30070322 30070495 -55625259 + MER91A DNA MER1_type 2 176 -20 259 258 103 10 chr15 30070495 30070592 -55625162 + MER91A DNA MER1_type 91 196 0 2135 108 3 0 chr15 30070648 30070953 -55624801 + AluSp SINE Alu 1 306 -7 1865 118 0 7 chr15 30070958 30071247 -55624507 + AluY SINE Alu 1 287 -24 207 0 0 0 chr15 30071254 30071277 -55624477 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr15 30071860 30071883 -55623871 + (TG)n Simple_repeat Simple_repeat 1 23 0 863 154 0 27 chr15 30071890 30072039 -55623715 - FRAM SINE Alu -30 146 2 436 221 159 0 chr15 30072651 30072764 -55622990 + MER58B DNA MER1_type 211 341 0 230 304 70 97 chr15 30072866 30073123 -55622631 - L2 LINE L2 -198 3074 2825 397 267 67 8 chr15 30073133 30073253 -55622501 - L2 LINE L2 0 3313 3187 279 355 121 27 chr15 30076508 30076846 -55618908 - L3 LINE CR1 -22 1555 1186 1495 161 7 21 chr15 30078426 30078736 -55617018 - AluJo SINE Alu 0 306 1 186 224 155 0 chr15 30078737 30078795 -55616959 - L3 LINE CR1 -824 753 687 32 57 0 0 chr15 30079095 30079148 -55616606 + AT_rich Low_complexity Low_complexity 1 53 0 684 189 14 14 chr15 30079887 30080035 -55615719 - AluSg/x SINE Alu 0 310 163 1997 119 0 3 chr15 30081262 30081586 -55614168 - AluSx SINE Alu 0 323 1 297 169 0 28 chr15 30081658 30081729 -55614025 - L1MA7 LINE L1 -2 6289 6221 229 31 0 0 chr15 30082082 30082114 -55613640 + Alu SINE Alu 102 133 -166 2200 92 0 3 chr15 30082114 30082409 -55613345 + AluSg SINE Alu 1 294 -16 246 62 0 0 chr15 30083602 30083634 -55612120 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 218 203 0 17 chr15 30084254 30084313 -55611441 + GA-rich Low_complexity Low_complexity 3 60 0 393 267 161 37 chr15 30084678 30084708 -55611046 - MIR SINE MIR -79 183 158 503 96 0 24 chr15 30084708 30084791 -55610963 - L1MA4 LINE L1 -4 6296 6216 393 267 161 37 chr15 30084791 30084921 -55610833 - MIR SINE MIR -104 158 3 265 310 23 23 chr15 30085406 30085493 -55610261 + L2 LINE L2 3186 3272 0 326 294 118 87 chr15 30085616 30086007 -55609747 - L2 LINE L2 -4 3268 2866 234 0 0 0 chr15 30086183 30086209 -55609545 + (CA)n Simple_repeat Simple_repeat 2 27 0 469 304 114 5 chr15 30086552 30086753 -55609001 - MIR SINE MIR -16 246 24 470 205 27 9 chr15 30087016 30087128 -55608626 - Charlie8 DNA MER1_type -2195 222 109 292 281 157 38 chr15 30087214 30087424 -55608330 - MIR SINE MIR -15 247 13 372 336 130 0 chr15 30087907 30088053 -55607701 - MIR SINE MIR -78 184 20 215 278 113 31 chr15 30088632 30088729 -55607025 + L2 LINE L2 3132 3236 -36 2287 97 0 0 chr15 30088759 30089070 -55606684 + AluY SINE Alu 1 311 0 328 291 166 40 chr15 30090103 30090278 -55605476 + MIR SINE MIR 63 259 -3 1528 234 30 8 chr15 30091771 30092134 -55603620 + MLT1A2 LTR MaLR 4 374 0 981 251 146 24 chr15 30092442 30092906 -55602848 + L2 LINE L2 2788 3312 -1 675 295 126 44 chr15 30093618 30094093 -55601661 + LTR33 LTR ERVL 3 516 -5 1928 136 27 0 chr15 30094476 30094770 -55600984 - AluJb SINE Alu -10 302 1 588 289 100 0 chr15 30095476 30095656 -55600098 - MIR SINE MIR -37 225 28 245 125 0 0 chr15 30095970 30096010 -55599744 - MER96 DNA MER1_type? -82 93 54 185 277 0 0 chr15 30096223 30096270 -55599484 - L2 LINE L2 -16 3256 3210 2063 118 0 0 chr15 30096345 30096634 -55599120 + AluSx SINE Alu 1 289 -23 1892 108 57 20 chr15 30097224 30097521 -55598233 + AluSc SINE Alu 1 308 -1 754 303 14 23 chr15 30097788 30098009 -55597745 + MIR SINE MIR 41 259 -3 1883 142 3 7 chr15 30098329 30098632 -55597122 - AluSc SINE Alu -7 302 1 22 0 0 0 chr15 30098632 30098654 -55597100 + AT_rich Low_complexity Low_complexity 1 22 0 341 355 120 0 chr15 30098892 30098953 -55596801 - MIR SINE MIR -38 224 172 1563 167 61 0 chr15 30098953 30099247 -55596507 + AluJo SINE Alu 1 312 0 341 355 120 0 chr15 30099247 30099368 -55596386 - MIR SINE MIR -90 172 20 470 258 0 8 chr15 30099385 30099509 -55596245 - L1MA10 LINE L1 -2 6332 6210 378 272 0 22 chr15 30099527 30099619 -55596135 + L1MC4 LINE L1 6614 6703 -1339 * 393 289 0 0 chr15 30099563 30099653 -55596101 - L1MC4 LINE L1 -1339 6703 6614 2330 81 0 0 chr15 30100178 30100474 -55595280 - AluSx SINE Alu -16 296 1 212 268 30 152 chr15 30101880 30101983 -55593771 + MIR3 SINE MIR 1 78 -130 1486 196 3 17 chr15 30101983 30102274 -55593480 + AluJo SINE Alu 1 287 -25 212 268 30 152 chr15 30102274 30102334 -55593420 + MIR3 SINE MIR 78 144 -64 1524 207 15 21 chr15 30102355 30102684 -55593070 + MLT1A1 LTR MaLR 4 330 -35 21 0 0 0 chr15 30102711 30102732 -55593022 + AT_rich Low_complexity Low_complexity 1 21 0 408 205 118 31 chr15 30103062 30103189 -55592565 - L2 LINE L2 -13 3300 3163 1806 155 7 3 chr15 30103231 30103521 -55592233 - AluJb SINE Alu -21 291 1 278 266 16 0 chr15 30103560 30103624 -55592130 - L1MCa LINE L1 -5731 695 631 344 274 86 26 chr15 30104005 30104122 -55591632 + MER63 DNA MER1_type 1 750 -86 329 259 0 12 chr15 30104124 30104209 -55591545 + MER63 DNA MER1_type 978 1061 0 2662 175 91 12 chr15 30105110 30105629 -55590125 - MER68 LTR ERV1 -2 560 1 336 256 183 0 chr15 30105825 30105962 -55589792 - MIR SINE MIR -23 239 78 309 317 46 36 chr15 30105971 30106127 -55589627 - MIR3 SINE MIR -18 190 28 327 282 10 39 chr15 30107013 30107116 -55588638 + MIR SINE MIR 113 212 -50 215 300 17 0 chr15 30107143 30107203 -55588551 - MIR SINE MIR -95 167 107 195 372 26 0 chr15 30107216 30107294 -55588460 + MIR SINE MIR 28 107 -101 288 158 0 88 chr15 30108096 30108153 -55587601 + MIR SINE MIR 57 108 -154 317 214 29 0 chr15 30108875 30108945 -55586809 + MIR SINE MIR 77 148 -60 218 267 67 13 chr15 30109487 30109562 -55586192 - MIR3 SINE MIR -49 159 81 360 297 73 24 chr15 30109675 30109840 -55585914 - MIR SINE MIR -14 248 76 330 320 163 7 chr15 30110620 30110767 -55584987 - MIR SINE MIR -85 177 8 365 278 40 26 chr15 30112224 30112375 -55583379 + MIR SINE MIR 70 222 -40 673 150 84 84 chr15 30112548 30112685 -55583069 + MLT1B LTR MaLR 1 140 -250 2198 99 3 0 chr15 30112685 30112979 -55582775 - AluSq SINE Alu -17 296 2 673 150 84 84 chr15 30112979 30113008 -55582746 + MLT1B LTR MaLR 139 167 -223 1710 217 20 46 chr15 30113096 30113612 -55582142 + L1ME2 LINE L1 5659 6149 -15 967 185 0 11 chr15 30113831 30114009 -55581745 - FRAM SINE Alu 0 176 1 1899 100 0 0 chr15 30114091 30114341 -55581413 + AluSx SINE Alu 1 250 -62 6780 63 2 17 chr15 30114496 30115413 -55580341 + SVA Other Other 483 1385 -1 234 0 0 0 chr15 30115434 30115460 -55580294 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1757 107 4 0 chr15 30116151 30116404 -55579350 + AluSp SINE Alu 1 254 -59 199 222 0 0 chr15 30116911 30116947 -55578807 + L2 LINE L2 3264 3299 -14 22 65 0 0 chr15 30118357 30118388 -55577366 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr15 30118532 30118573 -55577181 + GC_rich Low_complexity Low_complexity 1 41 0 539 340 96 13 chr15 30119070 30119807 -55575947 + L1ME LINE L1 4210 5028 -1118 539 258 69 74 chr15 30119869 30120120 -55575634 + L1ME LINE L1 5268 5522 -744 2633 22 0 3 chr15 30120120 30120431 -55575323 + AluY SINE Alu 1 310 -1 539 258 69 74 chr15 30120431 30120516 -55575238 + L1ME LINE L1 5522 5606 -660 249 153 188 35 chr15 30120557 30120642 -55575112 + L1ME LINE L1 5693 5790 -331 26 64 0 0 chr15 30121006 30121053 -55574701 + AT_rich Low_complexity Low_complexity 1 47 0 2459 225 95 27 chr15 30121167 30121948 -55573806 - L1ME3A LINE L1 -5 6165 5332 873 267 118 18 chr15 30121954 30122284 -55573470 - HAL1 LINE L1 -2135 372 10 * 1021 225 50 4 chr15 30122277 30122535 -55573219 - L1ME3A LINE L1 -870 5276 5007 628 141 99 8 chr15 30122546 30122667 -55573087 - FLAM_C SINE Alu 0 133 2 844 151 0 41 chr15 30122696 30122746 -55573008 - FLAM_A SINE Alu -169 142 91 3978 75 87 5 chr15 30122746 30123310 -55572444 + LTR66 LTR ERVL 1 610 0 844 151 0 41 chr15 30123310 30123405 -55572349 - FLAM_A SINE Alu -220 91 3 512 193 32 26 chr15 30123422 30123633 -55572121 - L1M4c LINE L1 -3927 2489 2237 2208 153 23 8 chr15 30123702 30124094 -55571660 - L1M4 LINE L1 -414 6581 6184 2079 212 33 25 chr15 30124195 30124353 -55571401 - L1M4 LINE L1 -994 5963 5808 1430 217 27 0 chr15 30124353 30124648 -55571106 - AluJo SINE Alu -8 304 2 2079 212 33 25 chr15 30124648 30125007 -55570747 - L1M4 LINE L1 -1149 5808 5442 * 2112 136 33 32 chr15 30125002 30125447 -55570307 - L1MCa LINE L1 -3908 3049 2602 5151 249 87 27 chr15 30125455 30126916 -55568838 - L1MCa LINE L1 -5310 1549 2 1366 133 41 7 chr15 30127513 30127784 -55567970 - AluY SINE Alu -11 300 21 575 298 144 14 chr15 30128395 30128847 -55566907 + MLT1K LTR MaLR 44 580 -8 2329 77 20 0 chr15 30128939 30129236 -55566518 + AluSc SINE Alu 1 303 -6 202 354 81 0 chr15 30129291 30129390 -55566364 + L2 LINE L2 3204 3310 -3 1774 147 82 3 chr15 30129441 30129760 -55565994 - MER7A DNA MER2_type -1 345 4 220 223 85 77 chr15 30132573 30132703 -55563051 + MIR SINE MIR 80 210 -52 285 29 0 0 chr15 30132855 30132889 -55562865 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 286 26 0 chr15 30134781 30134858 -55560896 - MIR3 SINE MIR -15 193 115 2155 103 17 0 chr15 30135382 30135673 -55560081 - AluSx SINE Alu -16 296 1 180 111 0 0 chr15 30136425 30136452 -55559302 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 305 104 45 90 chr15 30137887 30137954 -55557800 + MER3 DNA MER1_type 41 104 -105 1975 98 76 0 chr15 30138414 30138689 -55557065 - AluSq SINE Alu -17 296 1 1594 74 0 0 chr15 30138702 30138892 -55556862 - AluSq SINE Alu -48 265 76 607 110 0 0 chr15 30138968 30139059 -55556695 + AluY SINE Alu 1 91 -227 582 180 13 27 chr15 30140178 30140328 -55555426 + AluY SINE Alu 164 311 0 343 264 66 33 chr15 30140571 30140692 -55555062 + L2 LINE L2 3180 3304 -9 443 266 46 0 chr15 30140791 30140900 -55554854 + L2 LINE L2 3192 3305 -8 2464 85 0 16 chr15 30142235 30142553 -55553201 + AluSq SINE Alu 1 313 0 25 51 0 0 chr15 30142745 30142784 -55552970 + AT_rich Low_complexity Low_complexity 1 39 0 2009 144 0 10 chr15 30143507 30143806 -55551948 + AluSx SINE Alu 1 296 -16 2451 68 0 0 chr15 30144793 30145088 -55550666 + AluY SINE Alu 1 295 -16 216 0 0 0 chr15 30145854 30145878 -55549876 + (A)n Simple_repeat Simple_repeat 1 24 0 531 248 89 78 chr15 30146440 30146708 -55549046 + MIR SINE MIR 1 262 0 1124 73 0 0 chr15 30146892 30147043 -55548711 - L1PA4 LINE L1 0 6155 6005 2171 131 3 6 chr15 30147783 30148096 -55547658 + AluSx SINE Alu 1 312 0 27 0 0 0 chr15 30149032 30149059 -55546695 + AT_rich Low_complexity Low_complexity 1 27 0 2003 140 20 0 chr15 30149472 30149765 -55545989 - AluJo SINE Alu -13 299 1 22 0 0 0 chr15 30149881 30149903 -55545851 + AT_rich Low_complexity Low_complexity 1 22 0 1205 126 5 0 chr15 30150601 30150792 -55544962 + L1MB3 LINE L1 5979 6170 -13 1676 188 3 10 chr15 30151489 30151777 -55543977 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 30152071 30152101 -55543653 + AT_rich Low_complexity Low_complexity 1 30 0 2258 261 114 19 chr15 30152246 30153233 -55542521 + L2 LINE L2 2216 3313 0 182 311 0 0 chr15 30153762 30153807 -55541947 + MER5B DNA MER1_type 1 45 -133 848 223 0 69 chr15 30153808 30154041 -55541713 - AluJo SINE Alu -17 295 79 201 74 0 0 chr15 30154044 30154071 -55541683 + (T)n Simple_repeat Simple_repeat 1 27 0 451 256 8 32 chr15 30154071 30154196 -55541558 - MER5B DNA MER1_type -50 128 7 26 50 0 0 chr15 30155254 30155294 -55540460 + AT_rich Low_complexity Low_complexity 1 40 0 658 189 82 0 chr15 30156329 30156488 -55539266 - MER104 DNA Tc2 -6 174 3 2015 142 0 7 chr15 30156750 30157053 -55538701 + AluSp SINE Alu 1 301 -12 517 170 80 6 chr15 30157122 30157281 -55538473 + MSTD LTR MaLR 185 393 -3 308 252 213 13 chr15 30157508 30157663 -55538091 + MIR3 SINE MIR 20 205 -3 329 269 0 0 chr15 30158594 30158687 -55537067 - MARNA DNA Mariner -8 578 486 493 274 81 87 chr15 30158726 30159073 -55536681 - L2 LINE L2 0 3272 2928 235 182 0 0 chr15 30159117 30159161 -55536593 - MARNA DNA Mariner -199 387 344 2415 89 7 0 chr15 30159299 30159603 -55536151 + AluSg SINE Alu 1 306 -4 252 342 76 0 chr15 30159845 30159924 -55535830 + L2 LINE L2 3141 3225 -47 285 154 231 0 chr15 30159998 30160063 -55535691 - MADE1 DNA Mariner 0 80 1 895 266 10 0 chr15 30160063 30160255 -55535499 - MIR SINE MIR -67 195 2 251 291 0 0 chr15 30160255 30160309 -55535445 + L2 LINE L2 3214 3267 -5 22 0 0 0 chr15 30162019 30162041 -55533713 + AT_rich Low_complexity Low_complexity 1 22 0 183 204 0 0 chr15 30163578 30163622 -55532132 + A-rich Low_complexity Low_complexity 2 45 0 2143 116 0 17 chr15 30164724 30165025 -55530729 + AluSq SINE Alu 1 296 -17 2023 139 10 10 chr15 30166136 30166437 -55529317 + AluJb SINE Alu 1 301 -11 2344 96 0 3 chr15 30166692 30166993 -55528761 + AluSx SINE Alu 1 300 -12 526 246 188 22 chr15 30167949 30168173 -55527581 - MIR SINE MIR -1 261 1 1027 303 71 36 chr15 30168189 30168835 -55526919 + L2 LINE L2 2128 2796 -518 450 321 9 0 chr15 30168829 30168935 -55526819 + L2 LINE L2 3138 3244 -28 * 1083 164 54 131 chr15 30169117 30169359 -55526395 + MER2 DNA MER2_type 1 205 -139 1448 155 30 37 chr15 30169359 30169656 -55526098 + AluSx SINE Alu 1 295 -17 1083 164 54 131 chr15 30169656 30169786 -55525968 + MER2 DNA MER2_type 205 344 0 32 26 0 0 chr15 30169967 30170006 -55525748 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 30170286 30170308 -55525446 + AT_rich Low_complexity Low_complexity 1 22 0 334 137 0 105 chr15 30170454 30170549 -55525205 + L1PA8 LINE L1 6081 6165 -7 2383 67 0 0 chr15 30173250 30173534 -55522220 - AluY SINE Alu -27 284 1 256 273 49 49 chr15 30174007 30174150 -55521604 - L3 LINE CR1 -122 1455 1313 29 28 0 0 chr15 30174251 30174287 -55521467 + AT_rich Low_complexity Low_complexity 1 36 0 2497 77 0 6 chr15 30175802 30176114 -55519640 + AluY SINE Alu 1 310 -1 1038 180 5 16 chr15 30176303 30176492 -55519262 - MER5A DNA MER1_type -1 188 2 1055 256 95 50 chr15 30177371 30177876 -55517878 + L1ME4a LINE L1 5285 5857 -264 2238 113 0 0 chr15 30177876 30178176 -55517578 + AluSg SINE Alu 1 300 -10 1055 256 95 50 chr15 30178176 30178452 -55517302 + L1ME4a LINE L1 5857 6119 -2 208 314 0 0 chr15 30178798 30178868 -55516886 + C-rich Low_complexity Low_complexity 3 72 0 21 36 0 0 chr15 30179098 30179126 -55516628 + AT_rich Low_complexity Low_complexity 1 28 0 1112 126 44 0 chr15 30179149 30179331 -55516423 - MER2 DNA MER2_type -155 190 1 337 240 212 14 chr15 30179734 30179880 -55515874 - L1ME4a LINE L1 -4 6117 5943 264 320 8 31 chr15 30179959 30180087 -55515667 - L1ME4a LINE L1 -316 5805 5681 26 0 0 0 chr15 30180178 30180204 -55515550 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 30180263 30180286 -55515468 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr15 30180915 30180938 -55514816 + (A)n Simple_repeat Simple_repeat 1 23 0 671 214 94 14 chr15 30181885 30182129 -55513625 + MLT1H LTR MaLR 12 302 -293 318 212 161 63 chr15 30182167 30182311 -55513443 + MLT1H1 LTR MaLR 415 553 -2 428 257 35 18 chr15 30182427 30182540 -55513214 + MIR SINE MIR 2 116 -146 21 0 0 0 chr15 30182714 30182735 -55513019 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr15 30183072 30183113 -55512641 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr15 30183197 30183220 -55512534 + AT_rich Low_complexity Low_complexity 1 23 0 342 256 103 0 chr15 30185036 30185153 -55510601 + MIR SINE MIR 124 252 -10 180 349 53 30 chr15 30185461 30185593 -55510161 + L2 LINE L2 1057 1191 -2123 21 36 0 0 chr15 30186645 30186673 -55509081 + AT_rich Low_complexity Low_complexity 1 28 0 322 297 63 0 chr15 30187381 30187492 -55508262 + L2 LINE L2 3155 3272 0 198 0 0 0 chr15 30188547 30188569 -55507185 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr15 30188673 30188696 -55507058 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 30188836 30188864 -55506890 + AT_rich Low_complexity Low_complexity 1 28 0 602 60 0 0 chr15 30189702 30189786 -55505968 + L1MB3 LINE L1 6085 6168 -15 405 0 0 0 chr15 30189788 30189833 -55505921 + (CA)n Simple_repeat Simple_repeat 2 46 0 644 172 8 25 chr15 30190540 30190662 -55505092 + FLAM_C SINE Alu 1 120 -13 878 73 89 0 chr15 30191577 30191701 -55504053 - MER85 DNA T2_type -4 135 1 207 0 0 0 chr15 30191787 30191810 -55503944 + (T)n Simple_repeat Simple_repeat 1 23 0 1963 173 3 3 chr15 30192748 30193054 -55502700 + AluJo SINE Alu 1 306 -6 1625 152 68 0 chr15 30193524 30193841 -55501913 + AluJo SINE Alu 2 336 0 181 376 43 11 chr15 30195131 30195224 -55500530 + L3 LINE CR1 1417 1512 -65 297 0 0 0 chr15 30195872 30195905 -55499849 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1679 218 75 27 chr15 30196317 30196799 -55498955 + MLT1D LTR MaLR 1 505 0 752 258 0 0 chr15 30196921 30197072 -55498682 + FRAM SINE Alu 6 156 -20 21 0 0 0 chr15 30197072 30197093 -55498661 + AT_rich Low_complexity Low_complexity 1 21 0 2191 107 3 3 chr15 30199059 30199350 -55496404 + AluSc SINE Alu 1 291 -18 354 264 20 7 chr15 30199489 30199653 -55496101 - AluSg/x SINE Alu -2 298 161 1590 186 4 0 chr15 30199845 30200120 -55495634 - AluSx SINE Alu -36 276 1 2296 85 17 0 chr15 30200490 30200784 -55494970 + AluSg SINE Alu 1 299 -11 903 150 150 0 chr15 30201027 30201187 -55494567 + MER5A DNA MER1_type 1 184 -5 2171 127 0 0 chr15 30202404 30202703 -55493051 + AluSx SINE Alu 2 300 -12 2234 80 0 3 chr15 30202735 30203021 -55492733 + AluSg SINE Alu 1 285 -25 493 208 135 45 chr15 30203723 30203968 -55491786 + L1ME4a LINE L1 5616 5882 -239 180 0 0 0 chr15 30204013 30204033 -55491721 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr15 30204032 30204059 -55491695 + (CA)n Simple_repeat Simple_repeat 1 27 0 977 187 18 36 chr15 30204143 30204368 -55491386 - AluSq SINE Alu -4 309 89 332 164 153 68 chr15 30204595 30204772 -55490982 + AluJo SINE Alu 108 299 -3 1108 213 55 35 chr15 30204791 30205234 -55490520 + L1MC4a LINE L1 6851 7476 -516 571 277 43 62 chr15 30205247 30205503 -55490251 + MIR SINE MIR 2 252 -10 2218 123 0 0 chr15 30206648 30206956 -55488798 - AluY SINE Alu -3 308 1 618 106 48 0 chr15 30208074 30208178 -55487576 - AluSq SINE Alu -203 109 1 251 146 0 61 chr15 30208188 30208270 -55487484 + L1ME4a LINE L1 6042 6118 -3 1936 125 28 3 chr15 30208272 30208560 -55487194 + AluSq SINE Alu 1 295 -18 364 268 12 0 chr15 30211242 30211324 -55484430 - MIR SINE MIR -68 194 112 23 0 0 0 chr15 30211540 30211563 -55484191 + AT_rich Low_complexity Low_complexity 1 23 0 1807 129 36 18 chr15 30212011 30212319 -55483435 + AluJb SINE Alu 1 313 0 1859 164 10 3 chr15 30212531 30212824 -55482930 - AluJb SINE Alu -17 295 1 186 325 208 0 chr15 30213490 30213610 -55482144 + MIR SINE MIR 6 150 -112 21 36 0 0 chr15 30213718 30213746 -55482008 + AT_rich Low_complexity Low_complexity 1 28 0 801 266 68 29 chr15 30214717 30215025 -55480729 - MER46C DNA MER2_type 0 338 19 2163 128 0 3 chr15 30215653 30215957 -55479797 + AluSp SINE Alu 1 303 -10 2272 77 114 19 chr15 30216017 30216394 -55479360 + L1MA2 LINE L1 5892 6304 0 2085 132 6 10 chr15 30216531 30216842 -55478912 - AluJb SINE Alu -2 310 1 569 331 60 33 chr15 30216937 30217303 -55478451 - L1MC/D LINE L1 -2053 5755 5380 449 296 149 37 chr15 30218696 30219017 -55476737 - L2 LINE L2 -1 3312 2956 2341 104 0 0 chr15 30219367 30219675 -55476079 - AluY SINE Alu -3 308 1 551 215 60 35 chr15 30220996 30221196 -55474558 - HAL1 LINE L1 -6 2501 2297 867 252 34 13 chr15 30221517 30221751 -55474003 - MIR SINE MIR -22 240 2 426 352 114 39 chr15 30223724 30224056 -55471698 - L2 LINE L2 0 3272 2916 319 304 35 38 chr15 30224407 30224553 -55471201 - MIR3 SINE MIR -76 132 7 1602 179 3 49 chr15 30224689 30225014 -55470740 + AluSx SINE Alu 1 310 -2 282 280 68 23 chr15 30225135 30225267 -55470487 - L1MEd LINE L1 -3573 2556 2419 738 205 63 0 chr15 30225302 30225429 -55470325 - FRAM SINE Alu -30 146 12 234 330 73 0 chr15 30225447 30225626 -55470128 - L1MEd LINE L1 -3735 2394 2203 1918 126 73 35 chr15 30225637 30226033 -55469721 - L1PA16 LINE L1 0 6166 5756 1506 214 135 12 chr15 30226349 30226849 -55468905 - L1MC4 LINE L1 -8 7987 7284 594 291 50 53 chr15 30226936 30227060 -55468694 - L1MEd LINE L1 -4616 1694 1571 2061 136 10 0 chr15 30227060 30227355 -55468399 - AluSx SINE Alu -14 298 1 594 291 50 53 chr15 30227355 30227924 -55467830 - L1MEd LINE L1 -4739 1571 967 606 307 82 45 chr15 30227955 30228492 -55467262 - L1MEd LINE L1 -5353 766 210 2293 100 0 0 chr15 30228548 30228878 -55466876 + AluSx SINE Alu 1 330 0 2205 197 56 0 chr15 30229274 30229736 -55466018 + L1MB8 LINE L1 5685 6172 -6 2223 102 3 29 chr15 30229993 30230307 -55465447 + AluSq SINE Alu 1 306 -7 342 0 0 0 chr15 30231068 30231106 -55464648 + (CA)n Simple_repeat Simple_repeat 1 38 0 547 310 59 35 chr15 30231581 30231836 -55463918 + MIR SINE MIR 2 262 0 577 146 0 0 chr15 30232279 30232368 -55463386 - AluY SINE Alu -10 301 213 411 282 176 8 chr15 30232429 30232560 -55463194 - MER5A DNA MER1_type 0 189 37 748 180 93 0 chr15 30233020 30233170 -55462584 - L1MB7 LINE L1 -10 6174 6011 47 0 0 0 chr15 30233555 30233602 -55462152 + AT_rich Low_complexity Low_complexity 1 47 0 555 231 0 69 chr15 30233782 30233985 -55461769 - L1MC5 LINE L1 -51 7910 7722 30 59 0 0 chr15 30234232 30234283 -55461471 + AT_rich Low_complexity Low_complexity 1 51 0 238 254 34 0 chr15 30234855 30234914 -55460840 + tRNA-Ile-ATT tRNA tRNA 11 71 -6 2423 81 0 3 chr15 30236668 30236965 -55458789 - AluSc SINE Alu -13 296 1 298 255 39 20 chr15 30237896 30237998 -55457756 + MER103 DNA DNA 9 112 -54 228 329 150 36 chr15 30239529 30239696 -55456058 + MIR3 SINE MIR 17 202 -6 2295 112 3 0 chr15 30239977 30240282 -55455472 + AluSq SINE Alu 1 306 -7 739 127 0 84 chr15 30240292 30240434 -55455320 + FLAM_C SINE Alu 1 130 -3 2206 139 55 44 chr15 30241057 30241509 -55454245 + MSTB2 LTR MaLR 1 457 0 22 0 0 0 chr15 30243416 30243438 -55452316 + AT_rich Low_complexity Low_complexity 1 22 0 381 70 70 0 chr15 30243474 30243531 -55452223 + HERV15 LTR ERV1 2687 2747 -5988 327 160 0 0 chr15 30243531 30243581 -55452173 + tRNA-Ile-ATT tRNA tRNA 28 77 0 3470 70 23 13 chr15 30243614 30244086 -55451668 - LTR15 LTR ERV1 -16 477 1 1723 211 61 5 chr15 30244652 30245027 -55450727 + MSTD LTR MaLR 1 396 0 325 301 98 55 chr15 30245105 30245288 -55450466 - L2 LINE L2 -219 3053 2863 216 255 0 0 chr15 30245448 30245499 -55450255 - L2 LINE L2 0 3313 3263 342 80 0 0 chr15 30245832 30245882 -55449872 + (GA)n Simple_repeat Simple_repeat 2 51 0 248 393 88 4 chr15 30245991 30246263 -55449491 - L3 LINE CR1 -742 835 541 24 0 0 0 chr15 30246664 30246688 -55449066 + AT_rich Low_complexity Low_complexity 1 24 0 1862 196 15 35 chr15 30247110 30247204 -55448550 + MSTD LTR MaLR 1 95 -301 1873 174 7 0 chr15 30247204 30247502 -55448252 + AluJb SINE Alu 1 300 -12 1862 196 15 35 chr15 30247502 30247811 -55447943 + MSTD LTR MaLR 95 396 0 295 293 273 25 chr15 30248038 30248236 -55447518 + MIR SINE MIR 13 259 -3 231 357 31 19 chr15 30248615 30248802 -55446952 - MIR SINE MIR -40 222 33 303 353 42 0 chr15 30248944 30249063 -55446691 - MIR3 SINE MIR -43 165 42 915 228 81 75 chr15 30249517 30249877 -55445877 + L2 LINE L2 2313 2674 -640 1326 175 16 40 chr15 30249899 30250202 -55445552 - AluJo SINE Alu -5 297 2 375 272 68 10 chr15 30250230 30250333 -55445421 + L2 LINE L2 3203 3311 -2 2515 69 0 0 chr15 30250451 30250757 -55444997 + AluY SINE Alu 1 306 -5 711 267 92 0 chr15 30251502 30251708 -55444046 + MIR SINE MIR 38 262 0 26 0 0 0 chr15 30251718 30251744 -55444010 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 30251981 30252005 -55443749 + AT_rich Low_complexity Low_complexity 1 24 0 775 189 0 0 chr15 30252159 30252286 -55443468 + FLAM_A SINE Alu 1 127 -6 271 323 32 21 chr15 30252344 30252437 -55443317 + MIR SINE MIR 48 141 -67 2148 116 0 0 chr15 30252533 30252845 -55442909 - AluSx SINE Alu 0 312 1 573 265 38 57 chr15 30253388 30253652 -55442102 + L1ME4a LINE L1 5569 5827 -294 1675 167 22 7 chr15 30253662 30253937 -55441817 - AluJb SINE Alu -27 285 7 239 222 111 28 chr15 30254049 30254157 -55441597 - L2 LINE L2 -167 3146 3030 281 204 333 15 chr15 30254159 30254360 -55441394 + L1ME4a LINE L1 5817 6081 -40 572 246 51 99 chr15 30254387 30254700 -55441054 - L2 LINE L2 -2 3311 3014 219 267 27 0 chr15 30254944 30255019 -55440735 + A-rich Low_complexity Low_complexity 5 81 0 188 200 0 0 chr15 30255233 30255268 -55440486 + L2 LINE L2 2125 2159 -1155 442 272 149 41 chr15 30256083 30256278 -55439476 + MIR SINE MIR 1 216 -46 1139 202 0 0 chr15 30256454 30256657 -55439097 + AluSx SINE Alu 1 203 -109 1901 159 3 0 chr15 30257008 30257304 -55438450 + AluSx SINE Alu 1 297 -15 678 179 0 8 chr15 30257309 30257426 -55438328 + FLAM_C SINE Alu 7 122 -21 236 175 35 18 chr15 30257431 30257488 -55438266 + (CATA)n Simple_repeat Simple_repeat 3 60 0 853 216 143 76 chr15 30257529 30257761 -55437993 + L1MD3 LINE L1 6633 6895 -1100 1569 141 115 7 chr15 30257761 30258030 -55437724 + AluJo SINE Alu 1 298 -14 853 216 143 76 chr15 30258030 30258125 -55437629 + L1MD3 LINE L1 6895 6982 -1013 25 65 0 0 chr15 30259646 30259692 -55436062 + AT_rich Low_complexity Low_complexity 1 46 0 387 316 7 14 chr15 30260019 30260158 -55435596 - MIR SINE MIR -122 140 3 1395 150 38 4 chr15 30265101 30265368 -55430386 + L1MA4 LINE L1 6023 6298 -2 269 229 117 12 chr15 30265404 30265526 -55430228 + MIR SINE MIR 73 215 -47 1955 129 0 17 chr15 30268231 30268540 -55427214 - AluSx SINE Alu 0 304 1 189 241 52 52 chr15 30269129 30269187 -55426567 - L2 LINE L2 -7 3265 3208 774 148 7 15 chr15 30269474 30269609 -55426145 + FLAM_C SINE Alu 1 134 -9 2363 91 3 0 chr15 30269754 30270063 -55425691 - AluSg SINE Alu 0 310 1 1682 152 34 0 chr15 30270114 30270383 -55425371 + AluJo SINE Alu 1 278 -34 704 247 19 0 chr15 30270730 30270884 -55424870 + FRAM SINE Alu 1 157 -19 501 269 88 19 chr15 30271240 30271400 -55424354 - MIR3 SINE MIR -6 202 32 1058 101 6 6 chr15 30272687 30272839 -55422915 - L1M2 LINE L1 -593 5707 5555 455 115 58 11 chr15 30272839 30272925 -55422829 + L1MA6 LINE L1 6210 6300 0 1903 111 61 20 chr15 30273099 30273396 -55422358 - AluSx SINE Alu -3 309 1 225 316 31 20 chr15 30273598 30273640 -55422114 + MIR SINE MIR 164 204 -58 2092 110 7 30 chr15 30273640 30273941 -55421813 + AluSq SINE Alu 1 294 -19 225 316 31 20 chr15 30273941 30273996 -55421758 + MIR SINE MIR 204 262 0 573 246 121 3 chr15 30274840 30274979 -55420775 - L1MC1 LINE L1 0 6344 6171 1983 92 51 24 chr15 30274979 30275272 -55420482 - AluSx SINE Alu -11 301 1 573 246 121 3 chr15 30275272 30275340 -55420414 - L1MC1 LINE L1 -173 6171 6112 480 263 136 10 chr15 30275571 30275769 -55419985 + L1M4 LINE L1 3982 4204 -1942 1144 214 96 33 chr15 30276987 30277352 -55418402 - MLT1B LTR MaLR -2 388 1 420 178 63 1 chr15 30277406 30277518 -55418236 - L1MEc LINE L1 -3275 2940 2821 214 83 0 28 chr15 30277518 30277554 -55418200 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 243 81 103 11 chr15 30277554 30277641 -55418113 + (TTTAA)n Simple_repeat Simple_repeat 5 99 0 209 85 43 21 chr15 30277643 30277690 -55418064 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2066 113 0 11 chr15 30277697 30277981 -55417773 - AluSg SINE Alu -29 281 1 1716 175 0 10 chr15 30277989 30278281 -55417473 - AluJo SINE Alu -18 294 6 2150 223 72 57 chr15 30278291 30278795 -55416959 - L1MEc LINE L1 -3379 2836 2341 2353 104 0 0 chr15 30278795 30279102 -55416652 + AluSx SINE Alu 1 307 -5 2150 223 72 57 chr15 30279102 30279302 -55416452 - L1MEc LINE L1 -3874 2341 2146 1618 111 123 4 chr15 30279302 30279545 -55416209 - AluSx SINE Alu -40 272 1 2150 223 72 57 chr15 30279545 30280054 -55415700 - L1MEc LINE L1 -4069 2146 1623 759 263 95 0 chr15 30280181 30280413 -55415341 - L1MEc LINE L1 -6102 294 41 1355 156 5 18 chr15 30281669 30281887 -55413867 + AluJo SINE Alu 15 229 -83 437 319 8 17 chr15 30283837 30283956 -55411798 - L2 LINE L2 -17 3255 3138 448 272 1 1 chr15 30284606 30284718 -55411036 + MIR SINE MIR 41 151 -68 181 163 0 93 chr15 30285113 30285156 -55410598 + MIR SINE MIR 70 108 -154 615 266 109 13 chr15 30285234 30285463 -55410291 - MIR SINE MIR -10 252 2 351 333 32 26 chr15 30286058 30286214 -55409540 + MIR3 SINE MIR 32 188 -20 2235 114 0 3 chr15 30286231 30286529 -55409225 + AluSx SINE Alu 1 297 -15 216 0 0 0 chr15 30287059 30287083 -55408671 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 711 279 185 9 chr15 30287566 30287906 -55407848 + L2 LINE L2 1853 2252 -1062 816 268 175 39 chr15 30287906 30288141 -55407613 + L2 LINE L2 2606 2808 -505 1621 181 58 0 chr15 30288141 30288296 -55407458 - AluJo SINE Alu -20 292 147 477 0 0 0 chr15 30288296 30288349 -55407405 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1621 181 58 0 chr15 30288349 30288469 -55407285 - AluJo SINE Alu -165 147 1 816 268 175 39 chr15 30288469 30288868 -55406886 + L2 LINE L2 2808 3312 -1 2040 138 14 0 chr15 30289164 30289461 -55406293 + AluSx SINE Alu 1 301 -11 2221 108 47 36 chr15 30289466 30289826 -55405928 - THE1B LTR MaLR 0 364 1 429 285 19 19 chr15 30290146 30290304 -55405450 - L1ME LINE L1 -336 5785 5628 1728 167 41 0 chr15 30290349 30290643 -55405111 - AluJb SINE Alu -6 306 1 477 355 77 0 chr15 30290979 30291162 -55404592 - L3 LINE CR1 -9 1568 1372 1577 144 76 4 chr15 30291448 30291746 -55404008 - AluSx SINE Alu 0 317 1 877 162 7 7 chr15 30292465 30292607 -55403147 + FRAM SINE Alu 5 146 -30 186 43 0 0 chr15 30292609 30292632 -55403122 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2284 94 0 3 chr15 30292971 30293269 -55402485 + AluY SINE Alu 1 297 -14 81 21 0 0 chr15 30293479 30293574 -55402180 + AT_rich Low_complexity Low_complexity 1 95 0 1066 165 91 135 chr15 30293828 30294235 -55401519 - MLT1B LTR MaLR 0 390 2 771 169 0 0 chr15 30294740 30294858 -55400896 - FLAM_C SINE Alu -15 118 1 870 284 82 3 chr15 30295278 30295529 -55400225 + MIR SINE MIR 1 262 0 2301 102 0 0 chr15 30296450 30296744 -55399010 - AluSx SINE Alu -18 294 1 2243 97 0 0 chr15 30296904 30297192 -55398562 + AluSp SINE Alu 1 288 -25 34 24 0 0 chr15 30297198 30297239 -55398515 + AT_rich Low_complexity Low_complexity 1 41 0 2187 100 0 0 chr15 30297941 30298220 -55397534 - AluSg SINE Alu -27 283 5 2214 110 0 3 chr15 30298507 30298806 -55396948 + AluSg SINE Alu 1 298 -12 2124 122 0 0 chr15 30299029 30299324 -55396430 + AluSx SINE Alu 5 299 -13 2260 102 0 0 chr15 30299655 30299950 -55395804 - AluSq SINE Alu -18 295 1 753 174 15 92 chr15 30300073 30300269 -55395485 - AluSg/x SINE Alu -12 300 120 21 0 0 0 chr15 30300564 30300585 -55395169 + AT_rich Low_complexity Low_complexity 1 21 0 2476 57 7 0 chr15 30300920 30301217 -55394537 - AluY SINE Alu -12 299 1 2132 126 0 59 chr15 30302287 30302645 -55393109 - MER1B DNA MER1_type 0 337 1 22 35 0 0 chr15 30302784 30302813 -55392941 + AT_rich Low_complexity Low_complexity 1 29 0 1908 167 0 7 chr15 30303824 30304130 -55391624 + AluJb SINE Alu 1 304 -8 219 237 105 26 chr15 30305075 30305151 -55390603 + MIR SINE MIR 155 236 -26 30 45 0 0 chr15 30305196 30305240 -55390514 + AT_rich Low_complexity Low_complexity 1 44 0 1751 147 52 3 chr15 30305274 30305560 -55390194 - AluJb SINE Alu -12 300 1 489 250 61 72 chr15 30305961 30306239 -55389515 + MLT1L LTR MaLR 110 448 -167 1831 149 10 0 chr15 30306245 30306540 -55389214 - AluSx SINE Alu -14 298 1 1957 123 0 80 chr15 30306551 30306738 -55389016 - AluSx SINE Alu -12 300 148 2361 76 0 0 chr15 30306738 30307026 -55388728 - AluY SINE Alu -23 288 1 1957 123 0 80 chr15 30307026 30307164 -55388590 - AluSx SINE Alu -164 148 1 333 228 82 82 chr15 30308071 30308183 -55387571 + MLT1L LTR MaLR 450 564 -51 2091 106 34 0 chr15 30308183 30308475 -55387279 - AluSg1 SINE Alu -6 303 2 333 228 82 82 chr15 30308475 30308520 -55387234 + MLT1L LTR MaLR 563 607 -8 207 225 0 0 chr15 30309014 30309054 -55386700 + A-rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 30309432 30309461 -55386293 + AT_rich Low_complexity Low_complexity 1 29 0 1604 164 10 40 chr15 30309461 30309759 -55385995 - AluJo SINE Alu -23 289 1 2513 145 8 19 chr15 30309763 30310245 -55385509 - L1MA4 LINE L1 -1 6299 5823 294 29 0 0 chr15 30310785 30310820 -55384934 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1768 116 21 0 chr15 30310820 30311061 -55384693 - AluSx SINE Alu -29 283 38 25 31 0 0 chr15 30311062 30311094 -55384660 + AT_rich Low_complexity Low_complexity 1 32 0 446 73 0 15 chr15 30311193 30311261 -55384493 + (TG)n Simple_repeat Simple_repeat 1 67 0 289 196 36 45 chr15 30311314 30311426 -55384328 + L1ME4a LINE L1 6010 6120 -1 1855 171 7 3 chr15 30311476 30311786 -55383968 - AluJo SINE Alu -1 311 1 2406 54 0 7 chr15 30311833 30312127 -55383627 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 30312161 30312193 -55383561 + AT_rich Low_complexity Low_complexity 1 32 0 4736 139 33 56 chr15 30312374 30312456 -55383298 + L1MB3 LINE L1 5263 5345 -838 2396 89 0 3 chr15 30312456 30312760 -55382994 + AluSq SINE Alu 1 303 -10 4736 139 33 56 chr15 30312760 30313034 -55382720 + L1MB3 LINE L1 5345 5624 -559 595 268 0 30 chr15 30313034 30313202 -55382552 - FRAM SINE Alu -3 163 1 4736 139 33 56 chr15 30313202 30313785 -55381969 + L1MB3 LINE L1 5624 6181 -2 668 297 95 20 chr15 30314419 30314905 -55380849 + L1ME LINE L1 5256 5794 -327 1039 257 49 2 chr15 30314906 30315315 -55380439 - L1M4 LINE L1 -2905 3241 2814 1002 84 0 0 chr15 30315323 30315454 -55380300 - AluSg/x SINE Alu -5 305 175 1847 168 0 32 chr15 30318814 30319129 -55376625 + AluJo SINE Alu 1 305 -7 518 90 26 0 chr15 30319267 30319345 -55376409 - MADE1 DNA Mariner 0 80 1 290 303 49 49 chr15 30319392 30319514 -55376240 - MIR SINE MIR -71 137 16 247 360 56 32 chr15 30319759 30319884 -55375870 + MIR3 SINE MIR 5 132 -76 566 251 98 27 chr15 30320442 30320625 -55375129 - MIR SINE MIR -26 236 41 22 0 0 0 chr15 30320743 30320765 -55374989 + AT_rich Low_complexity Low_complexity 1 22 0 1886 119 66 6 chr15 30320880 30321198 -55374556 + MER44D DNA MER2_type 1 607 -2 1087 178 0 36 chr15 30321412 30321631 -55374123 + MER46A DNA MER2_type 26 236 0 24 53 0 0 chr15 30321943 30321981 -55373773 + AT_rich Low_complexity Low_complexity 1 38 0 352 176 351 0 chr15 30322297 30322428 -55373326 + MIR SINE MIR 8 184 -78 1121 38 0 0 chr15 30322733 30322865 -55372889 - AluY SINE Alu -179 132 1 5614 143 20 14 chr15 30322869 30323850 -55371904 - L1MA3 LINE L1 0 6305 5319 314 329 134 49 chr15 30324307 30324672 -55371082 + L1MEd LINE L1 445 840 -5279 422 297 65 44 chr15 30324727 30325067 -55370687 + L1MEd LINE L1 900 1246 -4873 189 107 0 0 chr15 30325454 30325482 -55370272 + (T)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr15 30326413 30326435 -55369319 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr15 30326465 30326505 -55369249 + AT_rich Low_complexity Low_complexity 1 40 0 906 140 13 19 chr15 30326567 30326724 -55369030 + FRAM SINE Alu 5 160 -16 313 197 0 0 chr15 30327264 30327335 -55368419 + L1MC3 LINE L1 7715 7785 0 28 29 0 0 chr15 30327498 30327533 -55368221 + AT_rich Low_complexity Low_complexity 1 35 0 2287 170 62 0 chr15 30327866 30328267 -55367487 - MSTB LTR MaLR 0 426 1 940 54 93 266 chr15 30328687 30328853 -55366901 - MER30 DNA MER1_type 0 230 128 2084 121 3 0 chr15 30328853 30329162 -55366592 - AluSx SINE Alu 0 310 1 940 54 93 266 chr15 30329162 30329272 -55366482 - MER30 DNA MER1_type -102 128 1 1847 205 147 15 chr15 30329407 30329732 -55366022 - L1ME2 LINE L1 -194 5970 5689 1040 37 22 0 chr15 30329732 30329867 -55365887 + (AATAG)n Simple_repeat Simple_repeat 1 138 0 1847 205 147 15 chr15 30329867 30330073 -55365681 - L1ME2 LINE L1 -475 5689 5369 502 236 70 0 chr15 30330080 30330237 -55365517 - L1ME2 LINE L1 -904 5242 5075 881 221 39 0 chr15 30330237 30330418 -55365336 - MER20 DNA MER1_type 0 219 32 1440 222 71 40 chr15 30330430 30330874 -55364880 - L1ME2 LINE L1 -1064 5082 4653 1403 214 0 23 chr15 30330874 30331177 -55364577 - AluJo SINE Alu -6 296 1 1440 222 71 40 chr15 30331177 30331477 -55364277 - L1ME2 LINE L1 -1493 4653 4137 438 297 150 65 chr15 30331646 30332399 -55363355 - L2 LINE L2 -36 3236 2440 1651 184 17 3 chr15 30333846 30334139 -55361615 - AluJo SINE Alu -15 297 1 1584 92 64 9 chr15 30334225 30334443 -55361311 - MER30 DNA MER1_type 0 230 1 2042 110 3 60 chr15 30335456 30335775 -55359979 + AluSq SINE Alu 1 301 -12 2261 109 0 0 chr15 30336917 30337211 -55358543 + AluSx SINE Alu 1 294 -18 1805 119 14 58 chr15 30338255 30338571 -55357183 + AluSx SINE Alu 3 305 0 496 276 153 12 chr15 30338752 30338915 -55356839 - MER5A DNA MER1_type 0 189 4 239 261 29 0 chr15 30340706 30340775 -55354979 - L1MC4 LINE L1 -1324 6718 6648 21 0 0 0 chr15 30341530 30341551 -55354203 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 30341877 30341898 -55353856 + AT_rich Low_complexity Low_complexity 1 21 0 2163 106 24 3 chr15 30342567 30342860 -55352894 + AluSq SINE Alu 1 299 -14 265 68 17 102 chr15 30342896 30342955 -55352799 - AluSc SINE Alu 0 299 246 241 269 103 0 chr15 30343130 30343208 -55352546 - L1ME2 LINE L1 -3317 2829 2744 1938 153 0 10 chr15 30343263 30343557 -55352197 + AluJb SINE Alu 1 291 -21 519 259 6 56 chr15 30343557 30343719 -55352035 + LTR16A LTR ERVL 135 288 -162 1447 62 42 21 chr15 30344432 30344625 -55351129 - L1PA6 LINE L1 0 6154 5958 3089 146 37 15 chr15 30344843 30345379 -55350375 - L1MA8 LINE L1 -6 6285 5738 1958 150 7 0 chr15 30345730 30346036 -55349718 + AluSx SINE Alu 1 308 -4 2248 110 3 0 chr15 30346842 30347142 -55348612 - AluSx SINE Alu -11 301 1 1671 219 63 66 chr15 30347612 30347818 -55347936 - L1MC5 LINE L1 -36 7925 7720 3187 175 47 2 chr15 30347818 30348354 -55347400 + MER68 LTR ERV1 1 560 -2 1671 219 63 66 chr15 30348354 30348749 -55347005 - L1MC5 LINE L1 -241 7720 7326 25 75 0 0 chr15 30349359 30349412 -55346342 + AT_rich Low_complexity Low_complexity 1 53 0 4144 173 5 84 chr15 30349412 30349503 -55346251 - L1MB1 LINE L1 -11 6157 6060 1900 141 7 11 chr15 30349503 30349809 -55345945 + AluJo SINE Alu 1 305 0 4144 173 5 84 chr15 30349809 30350670 -55345084 - L1MB1 LINE L1 -108 6060 5279 866 146 7 21 chr15 30350670 30350814 -55344940 - FLAM_C SINE Alu -1 142 1 1415 228 11 11 chr15 30350814 30350944 -55344810 - L1MB1 LINE L1 -857 5289 5160 2288 91 0 3 chr15 30350944 30351240 -55344514 - AluSc SINE Alu -14 295 1 1415 228 11 11 chr15 30351240 30351456 -55344298 - L1MB1 LINE L1 -985 5161 4943 277 262 96 48 chr15 30351710 30351897 -55343857 - L1MC5 LINE L1 -30 7931 7736 2205 127 0 0 chr15 30352781 30353081 -55342673 - AluSx SINE Alu -12 300 1 1803 165 7 7 chr15 30353085 30353388 -55342366 - AluJo SINE Alu -9 303 1 284 186 0 0 chr15 30354029 30354072 -55341682 - L2 LINE L2 -268 3045 3003 546 266 57 17 chr15 30354076 30354253 -55341501 + MIR SINE MIR 5 188 -74 204 287 19 83 chr15 30354318 30354426 -55341328 + L2 LINE L2 3168 3268 -4 180 0 0 0 chr15 30355244 30355264 -55340490 + (T)n Simple_repeat Simple_repeat 1 20 0 843 424 43 56 chr15 30355502 30355804 -55339950 + AluSg SINE Alu 1 298 -2 1038 74 0 15 chr15 30355927 30356062 -55339692 + AluSx SINE Alu 1 133 -179 432 21 0 0 chr15 30356095 30356143 -55339611 - AluSq/x SINE Alu -181 131 84 1138 108 6 0 chr15 30356148 30356305 -55339449 + AluSx SINE Alu 140 297 -13 307 119 0 0 chr15 30358224 30358266 -55337488 - L1MC1 LINE L1 -16 6317 6276 21 0 0 0 chr15 30358289 30358310 -55337444 + AT_rich Low_complexity Low_complexity 1 21 0 215 235 15 59 chr15 30359097 30359165 -55336589 - L2 LINE L2 -4 3309 3245 * 319 320 122 93 chr15 30359145 30359588 -55336166 + L2 LINE L2 2808 3263 -9 271 188 145 0 chr15 30360000 30360069 -55335685 + L2 LINE L2 3233 3311 -2 255 253 194 29 chr15 30360388 30360558 -55335196 + MIR3 SINE MIR 3 200 -8 380 111 63 0 chr15 30360812 30360875 -55334879 - L1MA9 LINE L1 -2 6310 6244 315 211 194 29 chr15 30361236 30361403 -55334351 - L1MC4a LINE L1 -154 5967 5775 3355 131 46 38 chr15 30361416 30361673 -55334081 + Tigger2 DNA MER2_type 1 254 -2464 1964 116 65 0 chr15 30361673 30361949 -55333805 + AluSx SINE Alu 1 294 -18 3355 131 46 38 chr15 30361949 30362277 -55333477 + Tigger2 DNA MER2_type 254 591 -2127 718 111 0 19 chr15 30362276 30362384 -55333370 + Tigger2 DNA MER2_type 965 1070 -1648 * 41772 68 3 5 chr15 30362390 30367795 -55327959 + L1PA5 LINE L1 1 5390 -756 3233 93 16 4 chr15 30367918 30368371 -55327383 + L1PA5 LINE L1 5693 6150 -4 2324 77 0 7 chr15 30368391 30368689 -55327065 + AluY SINE Alu 1 296 -15 622 71 0 0 chr15 30368689 30368773 -55326981 + Tigger2 DNA MER2_type 1067 1150 -1568 1166 233 11 11 chr15 30368780 30369051 -55326703 + AluJb SINE Alu 10 280 -32 3897 114 5 60 chr15 30369075 30369120 -55326634 + Tigger2 DNA MER2_type 1134 1180 -1538 1467 140 103 67 chr15 30369120 30369148 -55326606 - AluJo SINE Alu -1 311 285 396 0 0 0 chr15 30369148 30369192 -55326562 + (TG)n Simple_repeat Simple_repeat 2 45 0 1467 140 103 67 chr15 30369192 30369463 -55326291 - AluJo SINE Alu -27 285 1 3897 114 5 60 chr15 30369463 30369733 -55326021 + Tigger2 DNA MER2_type 1180 1463 -1255 2323 106 0 0 chr15 30369733 30370044 -55325710 - AluSx SINE Alu -1 311 1 3897 114 5 60 chr15 30370044 30370122 -55325632 + Tigger2 DNA MER2_type 1463 1544 -1174 1989 105 7 20 chr15 30370122 30370416 -55325338 - AluSp SINE Alu -23 290 1 3897 114 5 60 chr15 30370416 30370640 -55325114 + Tigger2 DNA MER2_type 1544 1719 -999 2834 53 6 0 chr15 30370752 30371089 -55324665 + L1PA5 LINE L1 5812 6150 -4 2234 91 0 7 chr15 30371109 30371406 -55324348 + AluY SINE Alu 1 295 -16 622 71 0 0 chr15 30371406 30371490 -55324264 + Tigger2 DNA MER2_type 1067 1150 -1568 1615 188 0 4 chr15 30371497 30371769 -55323985 + AluJb SINE Alu 10 280 -32 10304 128 14 27 chr15 30371793 30371838 -55323916 + Tigger2 DNA MER2_type 1134 1178 -1540 1475 140 103 67 chr15 30371838 30371866 -55323888 - AluJo SINE Alu -1 311 285 252 0 0 0 chr15 30371866 30371894 -55323860 + (TG)n Simple_repeat Simple_repeat 2 29 0 1475 140 103 67 chr15 30371894 30372165 -55323589 - AluJo SINE Alu -27 285 1 10304 128 14 27 chr15 30372165 30372435 -55323319 + Tigger2 DNA MER2_type 1178 1450 -1268 2341 104 0 0 chr15 30372435 30372744 -55323010 - AluSx SINE Alu -3 309 1 10304 128 14 27 chr15 30372744 30372822 -55322932 + Tigger2 DNA MER2_type 1450 1527 -1191 2152 85 7 17 chr15 30372822 30373115 -55322639 - AluSp SINE Alu -23 290 1 10304 128 14 27 chr15 30373115 30374324 -55321430 + Tigger2 DNA MER2_type 1527 2718 0 309 281 62 0 chr15 30374373 30374533 -55321221 - L1ME LINE L1 -376 5745 5576 424 296 30 21 chr15 30374626 30374795 -55320959 - L1ME LINE L1 -557 5609 5438 1668 185 0 38 chr15 30374795 30375109 -55320645 - AluJo SINE Alu -10 302 1 424 296 30 21 chr15 30375109 30375162 -55320592 - L1ME LINE L1 -728 5438 5387 676 172 102 16 chr15 30375162 30375290 -55320464 - AluJ SINE Alu -11 301 163 847 167 0 0 chr15 30375291 30375417 -55320337 - AluJ SINE Alu -186 126 1 3424 216 33 12 chr15 30375540 30376670 -55319084 - L1M2 LINE L1 -4334 2516 1082 1039 271 61 80 chr15 30377081 30377747 -55318007 - L1M2 LINE L1 -6218 631 1 931 177 0 0 chr15 30377808 30377955 -55317799 - FRAM SINE Alu -10 166 20 258 328 96 0 chr15 30378678 30378803 -55316951 + L2 LINE L2 2684 2820 -494 428 323 210 32 chr15 30378844 30379258 -55316496 - L2 LINE L2 -5 3267 2783 537 287 92 0 chr15 30379345 30379509 -55316245 - MIR SINE MIR -66 196 18 22 0 0 0 chr15 30379992 30380014 -55315740 + AT_rich Low_complexity Low_complexity 1 22 0 2160 115 7 0 chr15 30380620 30380916 -55314838 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 30381146 30381167 -55314587 + AT_rich Low_complexity Low_complexity 1 21 0 2423 64 0 10 chr15 30381202 30381500 -55314254 - AluY SINE Alu -16 295 1 2221 105 0 14 chr15 30381505 30381801 -55313953 - AluSg SINE Alu -18 292 1 1933 152 7 3 chr15 30382229 30382526 -55313228 + AluJb SINE Alu 1 298 -14 28 61 0 0 chr15 30382592 30382641 -55313113 + AT_rich Low_complexity Low_complexity 1 49 0 8906 79 6 78 chr15 30382801 30384324 -55311430 + SVA Other Other 12 1386 0 890 107 0 8 chr15 30384343 30384464 -55311290 + AluSg/x SINE Alu 160 279 -30 14307 173 29 25 chr15 30384709 30384834 -55310920 - L1MA4A LINE L1 0 7722 7599 1343 164 25 127 chr15 30384834 30385188 -55310566 - AluYb8 SINE Alu 0 318 1 14307 173 29 25 chr15 30385188 30386042 -55309712 - L1MA4A LINE L1 -123 7599 6749 1747 136 79 4 chr15 30386042 30386322 -55309432 - AluJb SINE Alu -11 301 1 14307 173 29 25 chr15 30386322 30386354 -55309400 - L1MA4A LINE L1 -973 6749 6719 180 0 0 0 chr15 30386354 30386374 -55309380 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 14307 173 29 25 chr15 30386374 30390646 -55305108 - L1MA4A LINE L1 -1003 6719 2428 1152 142 0 0 chr15 30390647 30390809 -55304945 - AluSg/x SINE Alu -15 295 134 3405 164 32 11 chr15 30390809 30391424 -55304330 - L1MA4A LINE L1 -4688 1877 1250 979 291 119 63 chr15 30391518 30392543 -55303211 - L2 LINE L2 0 3272 2185 652 120 0 0 chr15 30392566 30392666 -55303088 + AluJb SINE Alu 205 304 -8 718 195 17 0 chr15 30392707 30392825 -55302929 + AluJo/FLAM SINE Alu 1 120 -182 2015 140 10 7 chr15 30392825 30393125 -55302629 - AluSx SINE Alu -11 301 1 23 33 0 0 chr15 30393132 30393162 -55302592 + AT_rich Low_complexity Low_complexity 1 30 0 480 234 37 0 chr15 30393176 30393283 -55302471 - MIR SINE MIR -16 246 136 687 165 8 16 chr15 30393352 30393473 -55302281 - FLAM_A SINE Alu -13 120 1 1826 180 0 7 chr15 30393497 30393791 -55301963 - AluJb SINE Alu -19 293 2 202 348 14 51 chr15 30393815 30393953 -55301801 - L2 LINE L2 -1151 2163 2031 258 93 0 47 chr15 30394198 30394241 -55301513 - MSTA LTR MaLR 0 428 388 2592 77 0 0 chr15 30394241 30394552 -55301202 + AluSx SINE Alu 1 311 -1 1645 167 152 0 chr15 30394576 30394924 -55300830 - MSTA LTR MaLR -27 401 1 3590 144 62 42 chr15 30394924 30395631 -55300123 - MSTA-int LTR MaLR 0 1580 860 2455 127 0 0 chr15 30395629 30396023 -55299731 - MSTA-int LTR MaLR -1257 394 1 * 1861 156 130 16 chr15 30396023 30396407 -55299347 - MSTA LTR MaLR 0 428 1 8938 166 24 10 chr15 30396407 30398035 -55297719 - MSTA-int LTR MaLR 0 1651 2 2099 148 88 15 chr15 30398036 30398435 -55297319 - MSTA LTR MaLR 0 428 1 397 225 0 45 chr15 30398931 30399020 -55296734 + MIR SINE MIR 30 114 -148 21 57 0 0 chr15 30399370 30399405 -55296349 + AT_rich Low_complexity Low_complexity 1 35 0 1832 124 4 11 chr15 30399511 30399778 -55295976 - AluSx SINE Alu -13 299 35 1966 104 11 0 chr15 30399786 30400046 -55295708 - AluSg SINE Alu -13 297 35 2040 113 30 17 chr15 30400460 30400760 -55294994 + AluY SINE Alu 1 304 -7 300 279 12 12 chr15 30400892 30400978 -55294776 + MIR SINE MIR 171 256 -6 514 336 71 68 chr15 30401642 30402080 -55293674 - L2 LINE L2 -3 3269 2831 227 239 0 0 chr15 30402136 30402182 -55293572 + L1MC5 LINE L1 7843 7888 -73 186 103 0 0 chr15 30402204 30402233 -55293521 + (CA)n Simple_repeat Simple_repeat 2 30 0 2360 115 0 0 chr15 30402978 30403290 -55292464 + AluSx SINE Alu 1 312 0 239 261 65 65 chr15 30404308 30404400 -55291354 - MIR SINE MIR -159 103 12 208 354 115 35 chr15 30404732 30404845 -55290909 + MIR SINE MIR 18 139 -69 298 261 87 11 chr15 30405054 30405146 -55290608 + MIR SINE MIR 55 153 -109 23 33 0 0 chr15 30406219 30406249 -55289505 + AT_rich Low_complexity Low_complexity 1 30 0 222 261 216 27 chr15 30406714 30406825 -55288929 + L2 LINE L2 2326 2457 -857 264 297 132 39 chr15 30406835 30407017 -55288737 - MIR SINE MIR -12 250 52 1572 171 6 89 chr15 30407927 30408254 -55287500 + AluJo SINE Alu 1 300 -12 310 308 77 8 chr15 30408412 30408542 -55287212 + L2 LINE L2 3163 3301 -12 519 115 10 77 chr15 30409022 30409126 -55286628 + FLAM_A SINE Alu 46 142 0 244 140 50 120 chr15 30409131 30409231 -55286523 + MER94 DNA DNA 15 107 -27 285 403 16 0 chr15 30409427 30409551 -55286203 - L2 LINE L2 -9 3263 3138 350 315 74 31 chr15 30409595 30409757 -55285997 + L2 LINE L2 2882 3050 -222 365 234 25 108 chr15 30409856 30409904 -55285850 - MIR SINE MIR 0 262 212 2170 120 0 7 chr15 30409904 30410205 -55285549 - AluSp SINE Alu -14 299 1 365 234 25 108 chr15 30410205 30410314 -55285440 - MIR SINE MIR -50 212 118 260 260 104 31 chr15 30410699 30410795 -55284959 + MIR3 SINE MIR 92 194 -14 219 88 0 0 chr15 30411183 30411217 -55284537 + (A)n Simple_repeat Simple_repeat 1 34 0 362 254 216 16 chr15 30411225 30411393 -55284361 - MIR3 SINE MIR -8 200 2 2543 47 0 0 chr15 30411741 30412040 -55283714 + AluY SINE Alu 1 299 -12 1428 161 12 28 chr15 30412884 30413132 -55282622 - AluJo SINE Alu -22 290 47 483 304 71 27 chr15 30413641 30413865 -55281889 - MIR SINE MIR -22 240 7 1571 185 22 0 chr15 30413919 30414189 -55281565 + AluJo SINE Alu 7 282 -30 1543 146 19 4 chr15 30414263 30414524 -55281230 + L1PA16 LINE L1 5893 6157 -9 388 267 108 59 chr15 30414847 30415003 -55280751 + L1ME4a LINE L1 5601 5748 -373 333 156 0 0 chr15 30415003 30415067 -55280687 + L1MB3 LINE L1 6118 6181 -2 388 267 108 59 chr15 30415067 30415281 -55280473 + L1ME4a LINE L1 5748 5989 -132 222 320 107 0 chr15 30415605 30415680 -55280074 + L2 LINE L2 3185 3267 -5 228 309 111 24 chr15 30415726 30415852 -55279902 - MIR SINE MIR -60 202 66 716 313 129 30 chr15 30415926 30416360 -55279394 - L2 LINE L2 -5 3308 2832 339 321 16 32 chr15 30416651 30416789 -55278965 + L1MC4 LINE L1 7695 7831 -211 849 226 77 0 chr15 30416789 30416984 -55278770 + MER63A DNA MER1_type 1 210 0 339 321 16 32 chr15 30416984 30417032 -55278722 + L1MC4 LINE L1 7831 7878 -164 4829 140 32 24 chr15 30417032 30417956 -55277798 + L1MA6 LINE L1 5364 6295 -5 307 247 86 0 chr15 30418067 30418160 -55277594 + L1MC4 LINE L1 7925 8025 -17 2261 61 0 51 chr15 30418160 30418473 -55277281 - AluY SINE Alu -14 297 1 21 0 0 0 chr15 30418475 30418496 -55277258 + AT_rich Low_complexity Low_complexity 1 21 0 287 369 92 14 chr15 30419541 30419758 -55275996 - MIR SINE MIR -12 250 17 661 292 79 86 chr15 30420685 30421151 -55274603 - L2 LINE L2 0 3313 2851 1665 178 0 59 chr15 30421307 30421628 -55274126 + AluJo SINE Alu 1 302 -10 674 186 55 7 chr15 30422384 30422529 -55273225 - MIR SINE MIR -27 235 84 905 253 30 5 chr15 30422660 30422862 -55272892 + MIR SINE MIR 53 259 -3 772 147 0 29 chr15 30423474 30423610 -55272144 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr15 30423908 30423930 -55271824 + AT_rich Low_complexity Low_complexity 1 22 0 347 270 225 17 chr15 30424164 30424342 -55271412 - MIR SINE MIR -1 261 47 2523 46 7 0 chr15 30424886 30425193 -55270561 + AluY SINE Alu 1 309 -2 507 220 118 21 chr15 30425564 30425750 -55270004 - MER112 DNA MER1_type -9 251 48 26 0 0 0 chr15 30426384 30426410 -55269344 + AT_rich Low_complexity Low_complexity 1 26 0 244 310 46 23 chr15 30426442 30426529 -55269225 - L3 LINE CR1 -5 1572 1484 431 278 166 71 chr15 30428333 30428786 -55266968 + L1M2 LINE L1 658 1153 -5696 620 58 0 12 chr15 30429015 30429101 -55266653 + (TCC)n Simple_repeat Simple_repeat 1 85 0 313 301 44 35 chr15 30430535 30430648 -55265106 - L2 LINE L2 -5 3267 3154 387 276 48 0 chr15 30431204 30431309 -55264445 + L2 LINE L2 3188 3297 -16 422 160 103 117 chr15 30431513 30431726 -55264028 + MLT1B LTR MaLR 3 212 -178 349 252 230 14 chr15 30432442 30432581 -55263173 - MIR SINE MIR -32 230 62 265 301 39 0 chr15 30432579 30432682 -55263072 - MIR SINE MIR -53 209 103 * 700 284 105 13 chr15 30432818 30433057 -55262697 - MIR SINE MIR 0 262 2 559 161 93 0 chr15 30433390 30433508 -55262246 + MER3 DNA MER1_type 41 122 -87 1686 192 3 10 chr15 30433512 30433814 -55261940 + AluJo SINE Alu 1 300 -12 241 129 100 14 chr15 30433814 30433884 -55261870 + MER3 DNA MER1_type 2230 2305 0 269 59 0 0 chr15 30433886 30433920 -55261834 - U2 snRNA snRNA -153 35 2 * 311 132 0 0 chr15 30433916 30433969 -55261785 + MER3 DNA MER1_type 2291 2343 0 195 42 0 0 chr15 30433969 30433993 -55261761 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 582 197 21 70 chr15 30433994 30434136 -55261618 - AluJo SINE Alu -177 135 1 743 160 194 13 chr15 30434137 30434374 -55261380 + MER3 DNA MER1_type 2334 2613 0 228 35 0 0 chr15 30434679 30434708 -55261046 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1709 169 0 4 chr15 30434710 30434976 -55260778 - AluJb SINE Alu -29 283 19 1342 160 20 75 chr15 30434975 30435281 -55260473 - AluJo SINE Alu -19 293 5 * 601 207 0 17 chr15 30435984 30436100 -55259654 - FLAM_A SINE Alu -19 114 1 311 320 88 16 chr15 30436255 30436380 -55259374 - L2 LINE L2 -18 3254 3121 2152 78 0 0 chr15 30436383 30436687 -55259067 + AluY SINE Alu 1 304 0 619 268 65 42 chr15 30437028 30437289 -55258465 + MLT1H LTR MaLR 33 299 -250 278 233 96 0 chr15 30437344 30437417 -55258337 + MLT1H LTR MaLR 454 533 -16 401 315 116 68 chr15 30437549 30438016 -55257738 - L2 LINE L2 -638 2676 2188 299 312 0 11 chr15 30438037 30438130 -55257624 - L2 LINE L2 -1315 1999 1908 406 311 30 15 chr15 30439461 30439596 -55256158 - L2 LINE L2 0 3272 3136 994 247 110 77 chr15 30440064 30440759 -55254995 + L2 LINE L2 2585 3309 -4 191 326 98 23 chr15 30440841 30440973 -55254781 - L2 LINE L2 -970 2344 2203 2020 161 0 13 chr15 30441043 30441359 -55254395 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 30441415 30441439 -55254315 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 30441590 30441612 -55254142 + AT_rich Low_complexity Low_complexity 1 22 0 590 165 136 0 chr15 30441612 30441715 -55254039 - FLAM_C SINE Alu -25 118 2 2273 105 7 0 chr15 30441803 30442099 -55253655 + AluSp SINE Alu 1 298 -15 210 71 0 0 chr15 30442118 30442146 -55253608 + (CA)n Simple_repeat Simple_repeat 2 29 0 247 254 235 19 chr15 30442490 30442813 -55252941 - L1M4 LINE L1 -1488 4658 4266 2180 125 0 0 chr15 30442841 30443130 -55252624 - AluSx SINE Alu -23 289 1 304 300 52 77 chr15 30443217 30443318 -55252436 - L1M4 LINE L1 -2063 4083 3981 1453 201 35 0 chr15 30443318 30443601 -55252153 + AluJo SINE Alu 2 294 -18 304 300 52 77 chr15 30443601 30443614 -55252140 - L1M4 LINE L1 -2165 3981 3969 1795 177 11 0 chr15 30443614 30443897 -55251857 + AluJb SINE Alu 1 286 -26 304 300 52 77 chr15 30443897 30444394 -55251360 - L1M4 LINE L1 -2177 3969 3489 1664 167 4 0 chr15 30444394 30444678 -55251076 - AluJb SINE Alu 0 312 38 304 300 52 77 chr15 30444678 30444794 -55250960 - L1M4 LINE L1 -2657 3489 3372 1018 229 50 46 chr15 30445906 30446134 -55249620 - L1ME LINE L1 -413 5751 5525 2264 103 0 10 chr15 30446134 30446445 -55249309 + AluY SINE Alu 4 311 0 1018 229 50 46 chr15 30446445 30446758 -55248996 - L1ME LINE L1 -639 5525 5210 452 295 81 79 chr15 30447175 30447454 -55248300 - L2 LINE L2 -346 2968 2686 1307 178 129 75 chr15 30447454 30447936 -55247818 - Charlie4a DNA MER1_type 0 508 1 452 295 81 79 chr15 30447936 30448086 -55247668 - L2 LINE L2 -628 2686 2538 199 329 103 13 chr15 30450055 30450210 -55245544 + MIR3 SINE MIR 30 198 -10 2079 58 0 15 chr15 30450894 30451155 -55244599 + AluY SINE Alu 39 295 -16 301 309 166 40 chr15 30451764 30451939 -55243815 - MIR SINE MIR -19 243 47 2120 108 29 10 chr15 30452258 30452564 -55243190 - AluSx SINE Alu 0 312 1 259 187 80 40 chr15 30453036 30453111 -55242643 + MER5A DNA MER1_type 35 112 -77 713 164 30 8 chr15 30453157 30453291 -55242463 - MER3 DNA MER1_type -71 138 2 2572 121 39 98 chr15 30453306 30453414 -55242340 - Tigger1 DNA MER2_type -4 2414 2301 1820 119 27 4 chr15 30453414 30453674 -55242080 + AluSq SINE Alu 22 287 -26 2572 121 39 98 chr15 30453674 30453778 -55241976 - Tigger1 DNA MER2_type -117 2301 2192 833 207 181 71 chr15 30453778 30454044 -55241710 + AluJo SINE Alu 1 295 -7 2572 121 39 98 chr15 30454044 30454392 -55241362 - Tigger1 DNA MER2_type -226 2192 1886 2494 166 266 31 chr15 30454394 30454983 -55240771 + L1MA4 LINE L1 4347 4797 -1349 2356 108 0 0 chr15 30454983 30455289 -55240465 + AluSx SINE Alu 1 306 -6 2494 166 266 31 chr15 30455289 30455524 -55240230 + L1MA4 LINE L1 4797 5364 -782 1822 152 23 23 chr15 30455525 30455835 -55239919 + AluSx SINE Alu 1 310 -2 1765 127 88 14 chr15 30455846 30456129 -55239625 + AluSx SINE Alu 1 304 -8 2259 111 19 3 chr15 30456129 30456499 -55239255 + L1MA4 LINE L1 5665 6040 -260 8780 118 21 3 chr15 30456508 30456941 -55238813 - Tigger1 DNA MER2_type -527 1891 1467 1811 132 0 8 chr15 30456941 30457206 -55238548 + AluSx SINE Alu 33 295 -17 8780 118 21 3 chr15 30457206 30458159 -55237595 - Tigger1 DNA MER2_type -951 1467 480 985 136 7 0 chr15 30458209 30458349 -55237405 - AluJb SINE Alu -171 141 1 2799 144 23 0 chr15 30458349 30458829 -55236925 - Tigger1 DNA MER2_type -1926 492 2 1871 125 6 87 chr15 30458857 30458992 -55236762 + AluSx SINE Alu 3 147 -165 2093 109 14 3 chr15 30458992 30459275 -55236479 - AluSq SINE Alu -27 286 1 1871 125 6 87 chr15 30459275 30459460 -55236294 + AluSx SINE Alu 147 297 -15 311 252 213 26 chr15 30459491 30459646 -55236108 - L2 LINE L2 -1144 2170 1987 2155 122 0 7 chr15 30459877 30460181 -55235573 + AluSx SINE Alu 1 302 -10 816 153 15 0 chr15 30460182 30460313 -55235441 - AluJo/FLAM SINE Alu -169 133 1 232 314 33 25 chr15 30460960 30461081 -55234673 - L2 LINE L2 -1354 1960 1839 1385 137 53 26 chr15 30464034 30464153 -55231601 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr15 30464153 30464177 -55231577 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1385 137 53 26 chr15 30464177 30464283 -55231471 + AluJo SINE Alu 115 232 -80 28 0 0 0 chr15 30464284 30464312 -55231442 + AT_rich Low_complexity Low_complexity 1 28 0 1994 159 0 0 chr15 30464317 30464613 -55231141 + AluSx SINE Alu 7 302 -10 2262 94 0 3 chr15 30464616 30464914 -55230840 + AluSg SINE Alu 1 297 -13 1343 134 94 43 chr15 30465455 30465731 -55230023 + AluJo SINE Alu 11 300 -12 826 179 13 0 chr15 30466344 30466495 -55229259 - FRAM SINE Alu -16 160 8 182 327 0 18 chr15 30466814 30466869 -55228885 - L2 LINE L2 -1 3271 3218 2187 90 0 27 chr15 30467603 30467904 -55227850 + AluSg SINE Alu 8 300 -10 571 211 0 75 chr15 30468168 30468315 -55227439 - AluJo SINE Alu -104 208 73 362 253 248 11 chr15 30468329 30468696 -55227058 - L1M4 LINE L1 -3234 2912 2459 958 117 0 0 chr15 30468697 30468834 -55226920 + FLAM_C SINE Alu 6 142 -1 23 0 0 0 chr15 30469096 30469119 -55226635 + AT_rich Low_complexity Low_complexity 1 23 0 725 94 9 0 chr15 30470473 30470579 -55225175 + AluSq/x SINE Alu 1 107 -205 598 191 0 9 chr15 30471805 30471915 -55223839 + FLAM_C SINE Alu 1 109 -34 21 57 0 0 chr15 30471968 30472003 -55223751 + AT_rich Low_complexity Low_complexity 1 35 0 1518 206 9 37 chr15 30472280 30472601 -55223153 - AluJb SINE Alu 0 312 1 818 141 22 30 chr15 30472894 30473029 -55222725 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr15 30473029 30473052 -55222702 + AT_rich Low_complexity Low_complexity 1 23 0 206 299 139 73 chr15 30475723 30475860 -55219894 + MIR3 SINE MIR 33 178 -30 22 0 0 0 chr15 30476213 30476235 -55219519 + AT_rich Low_complexity Low_complexity 1 22 0 262 194 15 75 chr15 30477217 30477284 -55218470 + L2 LINE L2 3190 3252 -20 2101 119 0 23 chr15 30477684 30477986 -55217768 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 30477996 30478018 -55217736 + AT_rich Low_complexity Low_complexity 1 22 0 1804 146 19 56 chr15 30478164 30478486 -55217268 - AluSx SINE Alu -2 310 1 534 208 20 0 chr15 30480138 30480239 -55215515 - FRAM SINE Alu -11 165 63 644 141 0 0 chr15 30482020 30482119 -55213635 - Tigger7 DNA MER2_type 0 2491 2393 * 1265 155 49 38 chr15 30482117 30482260 -55213494 - Tigger7 DNA MER2_type -466 267 118 2416 87 10 0 chr15 30482260 30482569 -55213185 - AluSq SINE Alu -1 312 1 1265 155 49 38 chr15 30482569 30482689 -55213065 - Tigger7 DNA MER2_type -615 118 1 239 29 57 0 chr15 30483395 30483430 -55212324 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4939 205 45 11 chr15 30483761 30484851 -55210903 + L1M2 LINE L1 718 1844 -5722 2648 210 63 16 chr15 30484857 30485354 -55210400 + L1M2 LINE L1 3501 4057 -3508 2030 138 7 0 chr15 30485354 30485650 -55210104 + AluSx SINE Alu 11 308 -4 2648 210 63 16 chr15 30485650 30485991 -55209763 + L1M2 LINE L1 4057 4381 -3184 1748 166 0 14 chr15 30485991 30486287 -55209467 + AluJb SINE Alu 1 292 -20 2232 90 7 35 chr15 30486288 30486598 -55209156 + AluSq SINE Alu 12 312 -1 862 195 13 5 chr15 30486620 30486833 -55208921 + L1M2 LINE L1 4315 4539 -3026 1612 158 0 103 chr15 30486833 30486999 -55208755 + AluJb SINE Alu 1 118 -184 2197 108 0 3 chr15 30486999 30487294 -55208460 + AluSx SINE Alu 16 309 -3 1612 158 0 103 chr15 30487294 30487456 -55208298 + AluJb SINE Alu 118 295 -7 241 234 26 0 chr15 30488172 30488249 -55207505 - HAL1 LINE L1 -136 2371 2293 1407 179 10 50 chr15 30488272 30488573 -55207181 + AluJo SINE Alu 1 289 -23 29 0 0 0 chr15 30488579 30488608 -55207146 + AT_rich Low_complexity Low_complexity 1 29 0 324 289 64 45 chr15 30488770 30488926 -55206828 - HAL1b LINE L1 -444 904 746 913 141 109 16 chr15 30488983 30489167 -55206587 + THE1C LTR MaLR 175 375 0 10186 101 46 44 chr15 30489167 30489216 -55206538 + THE1C-int LTR MaLR 1 48 -1532 2355 60 10 23 chr15 30489216 30489516 -55206238 + AluY SINE Alu 1 296 -15 10186 101 46 44 chr15 30489516 30491044 -55204710 + THE1C-int LTR MaLR 48 1580 0 1999 135 58 25 chr15 30491044 30491407 -55204347 + THE1C LTR MaLR 1 375 0 2391 99 7 0 chr15 30491464 30491767 -55203987 - AluSp SINE Alu -8 305 1 2101 138 32 40 chr15 30491928 30492306 -55203448 - THE1C LTR MaLR 0 375 1 1817 135 4 8 chr15 30492818 30493084 -55202670 + AluJb SINE Alu 10 274 -38 297 316 53 45 chr15 30493138 30493271 -55202483 - LTR67 LTR ERVL -71 486 353 249 309 79 32 chr15 30493444 30493570 -55202184 - LTR67 LTR ERVL -384 173 42 2656 33 3 3 chr15 30493700 30494000 -55201754 + AluY SINE Alu 1 300 -11 2167 110 0 26 chr15 30494297 30494607 -55201147 + AluSg SINE Alu 1 302 -8 2344 98 0 25 chr15 30494738 30495056 -55200698 - AluSg SINE Alu 0 310 1 3249 143 53 45 chr15 30495088 30495711 -55200043 + L1MC3 LINE L1 6455 7082 -703 236 277 12 12 chr15 30495712 30495795 -55199959 + MLT1F1 LTR MaLR 26 108 -459 2191 129 29 15 chr15 30495843 30496183 -55199571 - MLT1B LTR MaLR -45 345 1 2698 122 63 98 chr15 30496197 30496327 -55199427 + L1MC3 LINE L1 7210 7343 -442 1718 196 0 3 chr15 30496327 30496628 -55199126 + AluJb SINE Alu 12 311 -1 2698 122 63 98 chr15 30496628 30497080 -55198674 + L1MC3 LINE L1 7343 7772 -13 288 0 0 0 chr15 30497080 30497112 -55198642 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2050 144 0 16 chr15 30497558 30497863 -55197891 + AluSx SINE Alu 1 300 -12 182 341 91 0 chr15 30498460 30498548 -55197206 + L2 LINE L2 3157 3252 -20 441 270 104 4 chr15 30498570 30498641 -55197113 + L2 LINE L2 3052 3115 -198 2113 165 45 55 chr15 30498641 30499113 -55196641 + MLT1C LTR MaLR 1 467 0 441 270 104 4 chr15 30499113 30499271 -55196483 + L2 LINE L2 3114 3304 -9 2058 130 0 0 chr15 30499605 30499889 -55195865 + AluSx SINE Alu 1 284 -28 219 114 0 0 chr15 30500662 30500697 -55195057 + (CAA)n Simple_repeat Simple_repeat 2 36 0 267 192 0 0 chr15 30501643 30501716 -55194038 + (CGG)n Simple_repeat Simple_repeat 2 74 0 296 133 17 0 chr15 30501810 30501870 -55193884 + (CCCCG)n Simple_repeat Simple_repeat 4 64 0 381 202 114 29 chr15 30503033 30503204 -55192550 + MIR SINE MIR 17 198 -64 425 216 18 27 chr15 30503429 30503540 -55192214 - MIR SINE MIR 0 262 153 1399 83 69 28 chr15 30503632 30503850 -55191904 - MER30 DNA MER1_type 0 230 4 1040 148 4 109 chr15 30504068 30504120 -55191634 + AluJb SINE Alu 86 142 -170 2004 93 67 0 chr15 30504120 30504411 -55191343 + AluSp SINE Alu 1 309 0 1040 148 4 109 chr15 30504411 30504587 -55191167 + AluJb SINE Alu 142 291 -21 293 317 59 20 chr15 30504760 30504861 -55190893 - L2 LINE L2 -15 3257 3153 538 130 10 0 chr15 30505456 30505556 -55190198 - L1MB7 LINE L1 0 6184 6084 1794 156 36 7 chr15 30505878 30506179 -55189575 - AluJo SINE Alu -2 310 1 360 0 0 0 chr15 30506182 30506222 -55189532 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1593 216 0 0 chr15 30506226 30506504 -55189250 - AluJb SINE Alu -34 278 1 26 30 0 0 chr15 30506504 30506537 -55189217 + AT_rich Low_complexity Low_complexity 1 33 0 326 211 172 8 chr15 30507212 30507340 -55188414 + L2 LINE L2 3161 3309 -4 24 0 0 0 chr15 30507917 30507941 -55187813 + AT_rich Low_complexity Low_complexity 1 24 0 809 152 62 0 chr15 30508423 30508584 -55187170 - L1ME1 LINE L1 -5 6161 6000 2264 107 0 0 chr15 30509530 30509828 -55185926 - AluSg SINE Alu -12 298 1 487 274 162 25 chr15 30510105 30510346 -55185408 - MLT1K LTR MaLR -2 586 313 2336 89 0 3 chr15 30510746 30511037 -55184717 + AluSg SINE Alu 1 290 -20 1667 189 7 3 chr15 30511131 30511445 -55184309 - AluJo SINE Alu 0 315 1 816 189 15 102 chr15 30512443 30512649 -55183105 - MER20 DNA MER1_type 0 219 32 363 220 231 83 chr15 30512799 30513058 -55182696 - L1ME4a LINE L1 0 6121 5902 2011 105 0 82 chr15 30513058 30513373 -55182381 - AluSq SINE Alu -24 289 1 363 220 231 83 chr15 30513373 30513499 -55182255 - L1ME4a LINE L1 -219 5902 5679 237 288 0 0 chr15 30514438 30514497 -55181257 - MIR SINE MIR 0 262 204 760 257 27 27 chr15 30514552 30514813 -55180941 + MIR SINE MIR 2 262 0 324 308 173 13 chr15 30514835 30515153 -55180601 + L2 LINE L2 2046 2414 -900 * 674 199 96 0 chr15 30515146 30515292 -55180462 + MIR SINE MIR 102 261 -1 196 312 46 18 chr15 30515310 30515419 -55180335 + L2 LINE L2 2395 2506 -808 1939 151 13 10 chr15 30515468 30515779 -55179975 - AluJo SINE Alu 0 312 1 469 227 200 0 chr15 30515972 30516122 -55179632 - MER5A DNA MER1_type -1 188 9 359 171 14 0 chr15 30516465 30516535 -55179219 - L1MB8 LINE L1 -4 6174 6104 1388 104 0 31 chr15 30517044 30517236 -55178518 + AluSx SINE Alu 1 186 -126 1251 263 10 13 chr15 30517452 30517760 -55177994 + AluSx SINE Alu 3 309 -3 6083 59 13 12 chr15 30518747 30519526 -55176228 - LTR17 LTR ERV1 0 780 1 2299 118 0 0 chr15 30520402 30520706 -55175048 - AluSx SINE Alu -8 304 1 667 286 100 46 chr15 30521285 30521676 -55174078 - L2 LINE L2 -5 3308 2897 2121 107 3 41 chr15 30521789 30522106 -55173648 + AluSq SINE Alu 1 305 -8 2332 87 0 35 chr15 30522442 30522753 -55173001 + AluSc SINE Alu 1 300 -9 877 244 127 13 chr15 30523265 30523572 -55172182 - Tigger8 DNA MER2_type -84 582 241 2450 91 0 0 chr15 30523721 30524029 -55171725 + AluSg SINE Alu 1 308 -2 2343 109 0 6 chr15 30524297 30524608 -55171146 + AluSq SINE Alu 1 309 -4 482 277 43 62 chr15 30525322 30525578 -55170176 - MIR SINE MIR -10 252 2 2107 200 98 56 chr15 30525591 30526049 -55169705 - L1MD3 LINE L1 -516 7292 6801 1587 141 115 7 chr15 30526049 30526318 -55169436 - AluJo SINE Alu -14 298 1 2107 200 98 56 chr15 30526318 30526560 -55169194 - L1MD3 LINE L1 -1007 6801 6571 238 183 33 17 chr15 30526587 30526647 -55169107 + (TATG)n Simple_repeat Simple_repeat 3 63 0 677 179 0 8 chr15 30526652 30526769 -55168985 - FLAM_C SINE Alu -21 122 7 2394 116 0 0 chr15 30526774 30527084 -55168670 - AluSx SINE Alu -2 310 1 621 254 136 30 chr15 30527104 30527340 -55168414 - L1MC4a LINE L1 -1212 6596 6336 761 121 9 9 chr15 30528140 30528256 -55167498 + FLAM_C SINE Alu 11 126 -17 761 128 0 0 chr15 30528309 30528455 -55167299 - AluSg/x SINE Alu 0 318 173 562 177 23 31 chr15 30529040 30529170 -55166584 - AluYb8 SINE Alu -188 130 2 21 0 0 0 chr15 30529482 30529503 -55166251 + AT_rich Low_complexity Low_complexity 1 21 0 2525 57 7 0 chr15 30529838 30530135 -55165619 - AluY SINE Alu -12 299 1 2063 134 3 64 chr15 30531206 30531565 -55164189 - MER1B DNA MER1_type 0 337 1 21 67 0 0 chr15 30531704 30531734 -55164020 + AT_rich Low_complexity Low_complexity 1 30 0 577 191 9 0 chr15 30532749 30532854 -55162900 + FLAM_C SINE Alu 2 107 -36 843 264 104 47 chr15 30533058 30533774 -55161980 - L1ME3A LINE L1 -149 6021 5176 2256 113 0 7 chr15 30534267 30534577 -55161177 - AluSg SINE Alu -2 308 1 1570 160 42 0 chr15 30534607 30534895 -55160859 + L1MC1 LINE L1 6016 6315 -18 524 300 38 9 chr15 30537219 30537429 -55158325 + L1ME1 LINE L1 4487 4702 -1444 1133 182 161 4 chr15 30537582 30537824 -55157930 + AluSg SINE Alu 1 280 -30 350 300 97 6 chr15 30537899 30538229 -55157525 + L1ME1 LINE L1 4922 5281 -865 557 172 0 0 chr15 30538247 30538334 -55157420 + FLAM SINE Alu 45 131 -12 2233 118 42 27 chr15 30538340 30538736 -55157018 + L1PA16 LINE L1 5328 5734 -432 2873 115 24 5 chr15 30538857 30539275 -55156479 + L1PA16 LINE L1 5738 6163 -3 1559 234 42 26 chr15 30539279 30539825 -55155929 + L1ME1 LINE L1 5287 6062 -104 479 209 157 0 chr15 30539887 30540002 -55155752 + L1MC4a LINE L1 5383 5515 -2293 1255 231 88 30 chr15 30540004 30540180 -55155574 + L1MC4a LINE L1 5557 5721 -2087 1502 49 0 27 chr15 30540180 30540365 -55155389 + L1PA6 LINE L1 5973 6152 -2 1255 231 88 30 chr15 30540365 30540629 -55155125 + L1MC4a LINE L1 5721 6023 -1785 7791 43 3 1 chr15 30540630 30542025 -55153729 + L1PA6 LINE L1 4757 6154 0 1083 230 98 62 chr15 30542095 30542543 -55153211 - L1ME3 LINE L1 -1 6161 5698 1834 250 107 63 chr15 30542556 30544167 -55151587 + L1MB8 LINE L1 5782 6178 0 * 1953 233 174 18 chr15 30543549 30544273 -55151481 + L1MC4 LINE L1 7064 7900 -142 258 211 0 0 chr15 30545433 30545490 -55150264 - MER102b DNA MER1_type -6 324 268 203 189 0 0 chr15 30545578 30545615 -55150139 + A-rich Low_complexity Low_complexity 1 37 0 744 253 95 55 chr15 30546925 30547413 -55148341 + L2 LINE L2 2795 3313 0 320 292 78 32 chr15 30547420 30547574 -55148180 - L2 LINE L2 0 3313 3153 352 180 34 34 chr15 30548076 30548165 -55147589 + MER102b DNA MER1_type 253 341 0 559 139 13 0 chr15 30548427 30548506 -55147248 - AluSg/x SINE Alu -15 297 218 1305 202 112 16 chr15 30548540 30548993 -55146761 - MLT1G3 LTR MaLR -4 526 1 539 261 92 16 chr15 30548997 30549181 -55146573 - MARNA DNA Mariner -246 340 143 388 214 29 0 chr15 30549911 30549981 -55145773 - MIR3 SINE MIR -22 186 115 472 262 55 69 chr15 30550123 30550325 -55145429 + MIR SINE MIR 18 216 -46 2341 89 0 49 chr15 30550593 30550919 -55144835 + AluY SINE Alu 1 310 -1 1068 256 85 98 chr15 30551043 30551163 -55144591 - MER115 DNA AcHobo 0 4031 3911 2001 125 7 33 chr15 30551163 30551467 -55144287 - AluSx SINE Alu -14 298 3 1068 256 85 98 chr15 30551467 30552053 -55143701 - MER115 DNA AcHobo -120 3911 3 848 188 0 0 chr15 30552436 30552569 -55143185 + FLAM_C SINE Alu 1 133 0 2048 146 7 0 chr15 30552754 30553063 -55142691 - AluSx SINE Alu -1 311 1 1865 120 78 0 chr15 30553832 30554116 -55141638 + AluSx SINE Alu 1 306 -6 2290 104 3 0 chr15 30555410 30555719 -55140035 - AluY SINE Alu -1 310 1 200 227 30 15 chr15 30555909 30555975 -55139779 - L2 LINE L2 -1357 1957 1891 1063 184 5 10 chr15 30556783 30556979 -55138775 + AluJo SINE Alu 118 312 0 1111 237 12 8 chr15 30559158 30559403 -55136351 - MIR SINE MIR -3 259 14 222 37 0 0 chr15 30560243 30560270 -55135484 + (T)n Simple_repeat Simple_repeat 1 27 0 981 217 219 19 chr15 30560469 30561036 -55134718 + Charlie7 DNA MER1_type 1918 2597 -15 2941 94 3 0 chr15 30561279 30561642 -55134112 + THE1B LTR MaLR 1 364 0 1355 249 60 30 chr15 30561904 30562100 -55133654 + LTR16C LTR ERVL 2 191 -300 3956 102 0 4 chr15 30562100 30562611 -55133143 - MER9 LTR ERVK 0 511 3 1355 249 60 30 chr15 30562611 30562844 -55132910 + LTR16C LTR ERVL 191 444 -47 580 282 68 70 chr15 30562876 30563540 -55132214 - L1MEd LINE L1 -4668 1463 799 945 150 0 0 chr15 30563540 30563673 -55132081 - FLAM_C SINE Alu 0 133 1 580 282 68 70 chr15 30563673 30563854 -55131900 - L1MEd LINE L1 -5332 799 717 1887 121 54 0 chr15 30563854 30564134 -55131620 - AluJo SINE Alu -15 297 3 580 282 68 70 chr15 30564134 30564294 -55131460 - L1MEd LINE L1 -5414 717 558 1852 215 26 16 chr15 30564370 30564756 -55130998 + MLT1B LTR MaLR 1 390 0 379 285 85 35 chr15 30564782 30564982 -55130772 - L1MEd LINE L1 -5898 221 12 2197 107 20 0 chr15 30565144 30565444 -55130310 + AluSx SINE Alu 1 306 -6 838 99 0 0 chr15 30566238 30566349 -55129405 - AluSc SINE Alu -9 300 190 730 197 0 0 chr15 30567907 30568024 -55127730 - FLAM_C SINE Alu -16 117 1 1304 178 171 4 chr15 30568201 30568459 -55127295 + AluJo SINE Alu 2 302 0 340 318 82 15 chr15 30569455 30569785 -55125969 + L1MC5 LINE L1 7312 7663 -298 198 0 0 0 chr15 30570274 30570296 -55125458 + (A)n Simple_repeat Simple_repeat 1 22 0 1480 168 93 4 chr15 30571390 30571670 -55124084 + AluJo SINE Alu 4 308 -4 952 165 18 24 chr15 30571823 30571993 -55123761 + AluJo SINE Alu 118 286 -26 1190 250 37 18 chr15 30572691 30573019 -55122735 - L1MD3 LINE L1 -9 7986 7653 991 117 62 19 chr15 30573020 30573182 -55122572 - AluJb SINE Alu -3 309 141 2458 120 30 8 chr15 30573185 30573552 -55122202 + THE1C LTR MaLR 1 375 0 252 122 0 0 chr15 30573553 30573602 -55122152 + LTR66 LTR ERVL 391 439 -171 280 72 14 58 chr15 30573625 30573694 -55122060 + (TA)n Simple_repeat Simple_repeat 1 66 0 685 120 0 74 chr15 30573732 30573840 -55121914 - AluJ/FLAM SINE Alu -211 101 2 2742 192 51 29 chr15 30573840 30574490 -55121264 - L1MC4a LINE L1 -315 7493 6830 303 183 113 0 chr15 30574496 30574567 -55121187 - L1MA9 LINE L1 -6 6306 6228 2090 129 0 3 chr15 30574805 30575092 -55120662 + AluSx SINE Alu 5 290 -22 983 160 33 6 chr15 30575202 30575383 -55120371 + L1M4 LINE L1 16 201 -6341 2590 109 51 9 chr15 30575383 30575813 -55119941 + LTR7 LTR ERV1 1 448 -2 7266 93 26 27 chr15 30575815 30576905 -55118849 + HERVH LTR ERV1 1 1089 -6624 14613 136 10 22 chr15 30577013 30579316 -55116438 + HERVH LTR ERV1 1719 3993 -3720 1852 116 9 14 chr15 30579299 30579609 -55116145 + HERVH LTR ERV1 3954 5144 -1947 * 5698 146 33 1 chr15 30579778 30580667 -55115087 + HERVH LTR ERV1 4233 5149 -2564 1389 129 18 5 chr15 30580668 30580885 -55114869 + HERVH LTR ERV1 5600 5819 -1894 * 2390 98 50 13 chr15 30580883 30581261 -55114493 + HERVH LTR ERV1 7322 7713 0 2846 74 93 29 chr15 30581261 30581682 -55114072 + LTR7 LTR ERV1 1 448 -2 2037 241 14 81 chr15 30581721 30582377 -55113377 + LTR9 LTR ERV1 1 612 0 2310 112 16 42 chr15 30582377 30582753 -55113001 + THE1C LTR MaLR 8 375 0 501 233 95 63 chr15 30582753 30582942 -55112812 + L1M4 LINE L1 221 415 -6127 2933 135 28 7 chr15 30582942 30583400 -55112354 - MER41E LTR ERV1 0 512 45 912 136 0 0 chr15 30583542 30583667 -55112087 + FLAM_C SINE Alu 1 125 -18 775 214 11 45 chr15 30583678 30583796 -55111958 + L1M4 LINE L1 462 574 -5968 3376 99 24 2 chr15 30583796 30584250 -55111504 + MER4C LTR ERV1 1 464 -1 775 214 11 45 chr15 30584250 30584309 -55111445 + L1M4 LINE L1 574 633 -5909 776 186 36 0 chr15 30584318 30584458 -55111296 - MLT2C1 LTR ERVL -252 145 1 921 214 9 19 chr15 30584586 30584801 -55110953 + L1MC4 LINE L1 7829 8041 -1 261 207 0 0 chr15 30584812 30584870 -55110884 + L1ME LINE L1 5669 5726 -438 1249 166 81 122 chr15 30584870 30585188 -55110566 + AluJb SINE Alu 1 306 0 2270 104 0 10 chr15 30585250 30585558 -55110196 - AluSc SINE Alu -2 307 3 689 147 0 20 chr15 30585611 30585713 -55110041 + FLAM_A SINE Alu 20 119 -23 764 253 89 0 chr15 30585765 30586002 -55109752 - MIR SINE MIR -4 258 1 222 37 0 0 chr15 30586483 30586510 -55109244 + (T)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr15 30586965 30586990 -55108764 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr15 30588353 30588376 -55107378 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr15 30588471 30588494 -55107260 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 30588792 30588821 -55106933 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 30588868 30588892 -55106862 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr15 30589865 30589900 -55105854 + (T)n Simple_repeat Simple_repeat 1 35 0 396 0 0 0 chr15 30590582 30590626 -55105128 + (A)n Simple_repeat Simple_repeat 1 44 0 2501 70 20 0 chr15 30591207 30591508 -55104246 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 30593971 30593996 -55101758 + AT_rich Low_complexity Low_complexity 1 25 0 305 336 8 8 chr15 30594521 30594643 -55101111 + MIR3 SINE MIR 44 165 -43 220 313 131 0 chr15 30594640 30594739 -55101015 + MIR SINE MIR 102 213 -49 * 416 153 31 110 chr15 30595972 30596088 -55099666 - Charlie7 DNA MER1_type -36 2576 2475 1527 164 42 35 chr15 30596088 30596375 -55099379 - AluJb SINE Alu -23 289 1 416 153 31 110 chr15 30596375 30596421 -55099333 - Charlie7 DNA MER1_type -137 2475 2427 288 281 70 9 chr15 30597013 30597127 -55098627 - L2 LINE L2 -219 3053 2933 466 350 21 8 chr15 30598634 30598871 -55096883 + LTR16A LTR ERVL 211 450 0 2043 154 0 0 chr15 30598892 30599191 -55096563 + AluSx SINE Alu 1 299 -13 451 300 65 69 chr15 30599294 30599554 -55096200 - L2 LINE L2 -845 2469 2211 207 167 0 0 chr15 30600473 30600509 -55095245 + GA-rich Low_complexity Low_complexity 2 37 0 504 222 104 7 chr15 30601050 30601194 -55094560 + MER103 DNA DNA 9 166 0 603 242 250 19 chr15 30601238 30601498 -55094256 + MER5C DNA MER1_type 5 324 0 418 73 21 41 chr15 30601795 30601879 -55093875 - MSTD LTR MaLR -286 79 1 392 260 48 55 chr15 30601880 30602026 -55093728 - MIR SINE MIR -61 201 57 768 161 112 49 chr15 30602620 30602844 -55092910 + L1MB8 LINE L1 5934 6171 -7 423 294 43 33 chr15 30604511 30604695 -55091059 - MIR SINE MIR -43 219 34 4014 125 6 3 chr15 30605215 30605848 -55089906 + L1MA4 LINE L1 5664 6298 -2 777 231 23 0 chr15 30607695 30607868 -55087886 - MER5B DNA MER1_type 0 178 2 475 212 277 0 chr15 30607882 30608019 -55087735 - MER5A DNA MER1_type -6 183 9 290 230 127 111 chr15 30608056 30608182 -55087572 + MER5A DNA MER1_type 12 139 -50 191 231 77 64 chr15 30608294 30608372 -55087382 - L3 LINE CR1 -904 673 595 475 287 60 11 chr15 30608396 30608661 -55087093 + L1ME4a LINE L1 5444 5728 -393 209 341 71 24 chr15 30608676 30608761 -55086993 + L2 LINE L2 3148 3236 -36 455 277 89 25 chr15 30608773 30608941 -55086813 + L1ME4a LINE L1 5767 5923 -198 345 24 0 0 chr15 30608941 30608983 -55086771 + (TG)n Simple_repeat Simple_repeat 2 43 0 455 277 89 25 chr15 30608983 30609128 -55086626 + L1ME4a LINE L1 5923 6100 -21 642 75 11 0 chr15 30609168 30609262 -55086492 - L1PB1 LINE L1 -2 6149 6055 260 332 55 0 chr15 30609369 30609481 -55086273 + MER5A DNA MER1_type 56 183 -6 2501 67 0 0 chr15 30609617 30609914 -55085840 + AluY SINE Alu 1 297 -14 446 218 226 24 chr15 30610444 30610568 -55085186 - MER5A DNA MER1_type -2 187 39 1504 236 31 104 chr15 30610635 30611402 -55084352 + L1MC4 LINE L1 6379 7110 -932 387 0 0 0 chr15 30611627 30611670 -55084084 + (CA)n Simple_repeat Simple_repeat 2 44 0 2186 102 3 0 chr15 30611793 30612104 -55083650 - AluSq SINE Alu 0 312 1 1901 115 8 0 chr15 30612454 30612706 -55083048 + AluSx SINE Alu 43 296 -16 360 0 0 0 chr15 30612957 30612997 -55082757 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr15 30613175 30613211 -55082543 + AT_rich Low_complexity Low_complexity 1 36 0 288 367 75 14 chr15 30614201 30614348 -55081406 + L2 LINE L2 3116 3271 -1 656 217 143 19 chr15 30614380 30614541 -55081213 - MER5A DNA MER1_type 0 189 9 219 204 107 68 chr15 30615072 30615175 -55080579 + L2 LINE L2 2930 3036 -236 369 0 0 0 chr15 30615202 30615243 -55080511 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 304 163 0 chr15 30615268 30615360 -55080394 + L2 LINE L2 3141 3247 -25 609 280 49 49 chr15 30615807 30616111 -55079643 - L1ME LINE L1 -376 5786 5483 439 231 99 0 chr15 30616334 30616455 -55079299 - MIR3 SINE MIR -9 199 67 2131 79 10 27 chr15 30616600 30616892 -55078862 - AluSc SINE Alu -22 287 1 844 208 23 0 chr15 30619175 30619348 -55076406 + MER5B DNA MER1_type 2 178 0 1055 103 0 0 chr15 30619538 30619684 -55076070 - L1PA11 LINE L1 0 6174 6029 324 83 0 0 chr15 30626973 30627021 -55068733 + (TGG)n Simple_repeat Simple_repeat 1 48 0 192 40 0 0 chr15 30627517 30627542 -55068212 + (TC)n Simple_repeat Simple_repeat 1 25 0 336 83 0 0 chr15 30627543 30627591 -55068163 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr15 30627636 30627659 -55068095 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 30627867 30627887 -55067867 + (CCG)n Simple_repeat Simple_repeat 3 22 0 245 252 39 94 chr15 30630607 30630734 -55065020 + L2 LINE L2 3193 3312 -1 243 0 0 0 chr15 30631874 30631901 -55063853 + (T)n Simple_repeat Simple_repeat 1 27 0 313 261 46 46 chr15 30635221 30635351 -55060403 - L1M4 LINE L1 -2944 3202 3073 204 265 19 19 chr15 30637502 30637664 -55058090 + CT-rich Low_complexity Low_complexity 3 164 0 22 35 0 0 chr15 30638078 30638107 -55057647 + AT_rich Low_complexity Low_complexity 1 29 0 468 0 0 0 chr15 30638921 30638973 -55056781 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr15 30639270 30639291 -55056463 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr15 30643426 30643458 -55052296 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr15 30643628 30643648 -55052106 + (CGG)n Simple_repeat Simple_repeat 2 21 0 515 250 172 10 chr15 30646397 30646589 -55049165 + MIR SINE MIR 35 257 -5 1514 160 46 36 chr15 30648708 30649014 -55046740 - AluJo SINE Alu -3 309 1 914 271 79 75 chr15 30649812 30650295 -55045459 + MLT1J LTR MaLR 27 511 0 2166 111 21 0 chr15 30650446 30650735 -55045019 + AluSx SINE Alu 1 295 -17 1586 190 7 14 chr15 30650749 30651028 -55044726 - AluJo SINE Alu -35 277 1 1864 194 66 16 chr15 30651030 30651407 -55044347 + MSTD LTR MaLR 1 396 0 305 216 68 0 chr15 30651407 30651495 -55044259 + MER20B DNA MER1_type 558 651 -132 2277 82 10 13 chr15 30651796 30652099 -55043655 - AluSg SINE Alu -7 303 2 188 428 14 7 chr15 30653762 30653907 -55041847 - L2 LINE L2 -433 2881 2736 14968 81 15 1 chr15 30654018 30654652 -55041102 - L1PA7 LINE L1 0 6154 5530 2099 101 31 7 chr15 30654652 30654938 -55040816 + AluSp SINE Alu 3 295 -18 14968 81 15 1 chr15 30654938 30657116 -55038638 - L1PA7 LINE L1 -624 5530 3322 517 303 59 59 chr15 30657116 30657506 -55038248 - L2 LINE L2 -611 2703 2314 248 89 0 22 chr15 30658304 30658349 -55037405 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 532 246 0 9 chr15 30658359 30658473 -55037281 - MER81 DNA DNA 0 114 2 200 176 0 0 chr15 30658477 30658511 -55037243 + (TG)n Simple_repeat Simple_repeat 1 34 0 2254 92 0 22 chr15 30659110 30659426 -55036328 + AluSc SINE Alu 1 309 0 204 188 43 0 chr15 30659646 30659715 -55036039 + (TA)n Simple_repeat Simple_repeat 2 73 0 1849 154 21 0 chr15 30659819 30660098 -55035656 + AluSx SINE Alu 1 285 -27 506 303 116 44 chr15 30660298 30660687 -55035067 - L1MC4a LINE L1 -1882 5926 5510 641 297 93 13 chr15 30661180 30661416 -55034338 + MIR SINE MIR 2 256 -6 180 0 0 0 chr15 30662282 30662302 -55033452 + (CATTC)n Simple_repeat Simple_repeat 2 21 0 39011 75 3 8 chr15 30662439 30668390 -55027364 + L1PA6 LINE L1 239 6152 -2 490 276 78 58 chr15 30668604 30668682 -55027072 - L1ME3A LINE L1 -293 5877 5802 2504 42 0 0 chr15 30668682 30668966 -55026788 - AluY SINE Alu -14 297 14 490 276 78 58 chr15 30668966 30669130 -55026624 - L1ME3A LINE L1 -368 5802 5630 369 233 135 8 chr15 30669169 30669302 -55026452 - L1ME3A LINE L1 -643 5523 5374 630 273 49 72 chr15 30669304 30669428 -55026326 - L1ME4a LINE L1 -187 5934 5809 1958 170 3 10 chr15 30669428 30669739 -55026015 - AluSx SINE Alu -3 309 1 630 273 49 72 chr15 30669739 30670003 -55025751 - L1ME4a LINE L1 -312 5809 5555 365 103 15 0 chr15 30672815 30672883 -55022871 + (TG)n Simple_repeat Simple_repeat 2 70 0 784 259 73 62 chr15 30673687 30674348 -55021406 - L1MC5 LINE L1 -34 7927 7260 473 249 36 2 chr15 30674584 30674774 -55020980 + MLT2B1 LTR ERVL 1 198 -216 714 206 13 27 chr15 30675029 30675206 -55020548 + MLT2B1 LTR ERVL 321 493 -22 256 111 37 74 chr15 30675223 30675277 -55020477 + MLT2B1 LTR ERVL 466 517 -3 461 191 19 19 chr15 30675308 30675413 -55020341 + MER103 DNA DNA 55 159 -7 2588 125 20 20 chr15 30675415 30675786 -55019968 + MSTB LTR MaLR 1 374 -52 2511 99 57 8 chr15 30675786 30676169 -55019585 - L1PA10 LINE L1 0 6168 5767 2588 125 20 20 chr15 30676169 30676198 -55019556 + MSTB LTR MaLR 373 401 -25 307 311 58 24 chr15 30676282 30676488 -55019266 - L3 LINE CR1 -264 1313 1101 483 227 176 11 chr15 30676694 30676870 -55018884 - MLT1K LTR MaLR -65 523 319 241 266 0 0 chr15 30677170 30677234 -55018520 - MIR SINE MIR -82 126 63 362 315 9 9 chr15 30679071 30679182 -55016572 + CT-rich Low_complexity Low_complexity 2 112 0 7440 47 0 1 chr15 30679686 30680111 -55015643 + L1PA5 LINE L1 4584 5008 -1146 2332 56 0 21 chr15 30680111 30680421 -55015333 - AluY SINE Alu 0 305 2 7440 47 0 1 chr15 30680421 30681579 -55014175 + L1PA5 LINE L1 5008 6149 -5 227 313 0 24 chr15 30681619 30681702 -55014052 - MIR SINE MIR -2 260 180 1867 142 76 33 chr15 30681726 30682093 -55013661 + MLT1B LTR MaLR 1 383 -7 603 250 0 8 chr15 30683210 30683342 -55012412 + MIR3 SINE MIR 39 169 -39 371 299 24 31 chr15 30683726 30683803 -55011951 - L2 LINE L2 -11 3261 3184 1956 153 3 7 chr15 30683803 30684097 -55011657 + AluJb SINE Alu 1 293 -19 371 299 24 31 chr15 30684097 30684146 -55011608 - L2 LINE L2 -88 3184 3136 2016 139 18 52 chr15 30684984 30685372 -55010382 - THE1C LTR MaLR 0 375 1 491 261 27 17 chr15 30686926 30687108 -55008646 + MIR SINE MIR 31 206 -56 1369 176 0 8 chr15 30688783 30689021 -55006733 + MER46A DNA MER2_type 1 236 0 297 0 0 0 chr15 30689091 30689124 -55006630 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr15 30689247 30689276 -55006478 + AT_rich Low_complexity Low_complexity 1 29 0 618 245 64 82 chr15 30689586 30689737 -55006017 - L1MC5 LINE L1 -35 7926 7774 935 168 6 0 chr15 30689737 30689898 -55005856 - FRAM SINE Alu 0 166 5 618 245 64 82 chr15 30689898 30690180 -55005574 - L1MC5 LINE L1 -187 7774 7501 1211 214 82 20 chr15 30690180 30690483 -55005271 - MER2 DNA MER2_type 0 345 24 504 293 7 7 chr15 30690540 30690690 -55005064 + MIR3 SINE MIR 30 179 -29 594 313 179 27 chr15 30691033 30691509 -55004245 - L3 LINE CR1 -3 1574 1027 1990 140 31 0 chr15 30694688 30694981 -55000773 + AluSx SINE Alu 11 312 0 347 137 36 129 chr15 30694981 30695120 -55000634 + L1MC5 LINE L1 7819 7944 -17 404 250 18 18 chr15 30697189 30697301 -54998453 + MIR3 SINE MIR 90 201 -7 241 244 26 13 chr15 30698447 30698525 -54997229 - LTR67 LTR ERVL -5 552 474 412 331 63 0 chr15 30698811 30698953 -54996801 - LTR67 LTR ERVL -368 189 39 2387 106 23 17 chr15 30699119 30699469 -54996285 + THE1C LTR MaLR 1 352 -23 940 208 66 0 chr15 30699609 30699835 -54995919 + LTR16C LTR ERVL 241 481 -10 207 0 0 0 chr15 30699968 30699991 -54995763 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 361 233 33 92 chr15 30701099 30701144 -54994610 - L2 LINE L2 -16 3297 3251 836 240 36 44 chr15 30701144 30701318 -54994436 - MER58A DNA MER1_type -2197 223 50 1771 183 0 3 chr15 30701318 30701608 -54994146 + AluJo SINE Alu 3 291 -21 836 240 36 44 chr15 30701608 30701658 -54994096 - MER58A DNA MER1_type -2370 50 1 361 233 33 92 chr15 30701658 30701732 -54994022 - L2 LINE L2 -62 3251 3185 1116 250 105 33 chr15 30702165 30702270 -54993484 + L2 LINE L2 2584 2680 -633 2240 116 0 10 chr15 30702270 30702564 -54993190 + AluSx SINE Alu 1 291 -21 1116 250 105 33 chr15 30702564 30703122 -54992632 + L2 LINE L2 2680 3288 -25 1343 164 131 40 chr15 30703123 30703421 -54992333 - THE1A LTR MaLR 0 355 31 2368 86 3 32 chr15 30703522 30703837 -54991917 - AluSg SINE Alu -4 306 1 236 216 111 92 chr15 30705491 30705644 -54990110 - L1ME4a LINE L1 -2 6119 5964 404 226 75 0 chr15 30707028 30707134 -54988620 - L2 LINE L2 -8 3305 3192 958 216 15 0 chr15 30707625 30707829 -54987925 - LTR16A1 LTR ERVL -5 452 246 446 273 7 53 chr15 30707874 30708024 -54987730 - LTR16A1 LTR ERVL -306 151 9 256 367 36 28 chr15 30708102 30708494 -54987260 - L2 LINE L2 -746 2568 2174 531 254 82 26 chr15 30709492 30709768 -54985986 - L1ME1 LINE L1 -9 6155 5912 2064 108 0 0 chr15 30709774 30710043 -54985711 + AluSq SINE Alu 27 295 -18 210 221 59 44 chr15 30711072 30711140 -54984614 - MIR SINE MIR -123 139 71 707 253 52 0 chr15 30712319 30712473 -54983281 + MER96 DNA MER1_type? 14 175 0 681 243 44 34 chr15 30713150 30713356 -54982398 + MIR SINE MIR 52 259 -3 259 307 88 18 chr15 30714177 30714291 -54981463 + MIR SINE MIR 30 151 -57 312 151 0 54 chr15 30715343 30715436 -54980318 + CT-rich Low_complexity Low_complexity 2 89 0 216 67 0 0 chr15 30715718 30715748 -54980006 + (T)n Simple_repeat Simple_repeat 1 30 0 180 125 0 0 chr15 30716431 30716463 -54979291 + (TG)n Simple_repeat Simple_repeat 1 32 0 505 333 33 29 chr15 30718171 30718414 -54977340 + MIR SINE MIR 9 252 -10 406 262 56 0 chr15 30720059 30720166 -54975588 + MIR SINE MIR 34 146 -62 340 330 89 8 chr15 30720670 30720906 -54974848 + L2 LINE L2 2404 2658 -656 205 262 0 33 chr15 30721224 30721285 -54974469 + L2 LINE L2 3010 3068 -245 287 322 0 22 chr15 30721342 30721432 -54974322 - MIR SINE MIR -128 134 47 191 286 63 16 chr15 30721438 30721501 -54974253 - MIR SINE MIR -188 74 9 567 236 30 42 chr15 30721501 30721666 -54974088 + MER117 DNA MER1_type 1 163 -34 2272 102 0 10 chr15 30721878 30722183 -54973571 - AluSx SINE Alu -10 302 1 396 312 151 19 chr15 30723039 30723363 -54972391 + L2 LINE L2 2343 2709 -605 237 67 0 0 chr15 30723457 30723487 -54972267 - LTR6A LTR ERV1 -462 102 73 4894 144 5 14 chr15 30724408 30725216 -54970538 - L1MC1 LINE L1 -14 6319 5519 3310 161 93 152 chr15 30725255 30725517 -54970237 + L1MA10 LINE L1 3313 3589 -2557 1020 175 0 11 chr15 30725517 30725694 -54970060 - FRAM SINE Alu -1 175 1 3310 161 93 152 chr15 30725694 30726482 -54969272 + L1MA10 LINE L1 3589 4467 -1679 * 5447 187 10 18 chr15 30726468 30727636 -54968118 + L1MA10 LINE L1 5176 6334 0 480 329 136 5 chr15 30727645 30728061 -54967693 + L2 LINE L2 2717 3280 -33 239 298 36 0 chr15 30728101 30728185 -54967569 + MIR3 SINE MIR 101 187 -21 821 131 7 7 chr15 30728219 30728364 -54967390 - L1PA13 LINE L1 0 6163 6019 207 69 0 0 chr15 30729618 30729647 -54966107 + (A)n Simple_repeat Simple_repeat 1 29 0 206 333 67 0 chr15 30729651 30729756 -54965998 + MIR SINE MIR 150 261 -1 250 267 158 42 chr15 30729991 30730111 -54965643 + L2 LINE L2 3180 3313 0 267 330 64 25 chr15 30730384 30730620 -54965134 - L1MC/D LINE L1 -1961 5847 5603 5695 132 8 28 chr15 30781758 30782981 -54912773 - L1MA2 LINE L1 -96 7627 6427 2824 115 34 13 chr15 30783000 30783581 -54912173 - L1MA2 LINE L1 -3822 3743 3157 448 162 36 27 chr15 30783575 30783686 -54912068 - L1MA2 LINE L1 -7438 127 16 * 942 205 22 0 chr15 30784323 30784508 -54911246 + MER5A DNA MER1_type 1 189 0 1009 289 77 11 chr15 30785983 30786437 -54909317 + LTR16C LTR ERVL 1 484 -7 186 43 0 0 chr15 30786466 30786489 -54909265 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 222 315 14 0 chr15 30786597 30786670 -54909084 + L2 LINE L2 3235 3308 -5 358 286 14 61 chr15 30786711 30786872 -54908882 + MIR3 SINE MIR 28 181 -27 213 196 0 0 chr15 30787816 30787862 -54907892 + CT-rich Low_complexity Low_complexity 3 48 0 360 0 0 0 chr15 30790461 30790501 -54905253 + (TG)n Simple_repeat Simple_repeat 2 41 0 951 234 113 0 chr15 30791028 30791259 -54904495 - MIR SINE MIR 0 262 6 203 183 33 17 chr15 30791590 30791650 -54904104 + A-rich Low_complexity Low_complexity 5 65 0 28 29 0 0 chr15 30792551 30792586 -54903168 + AT_rich Low_complexity Low_complexity 1 35 0 1283 167 8 0 chr15 30792592 30792831 -54902923 - L1MA6 LINE L1 -4 6296 6056 2952 108 22 208 chr15 30792831 30793321 -54902433 - L1 LINE L1 -897 5249 4670 204 40 0 0 chr15 30793321 30793346 -54902408 + (TG)n Simple_repeat Simple_repeat 2 26 0 2952 108 22 208 chr15 30793346 30793532 -54902222 - L1 LINE L1 -1476 4670 4796 1770 171 0 27 chr15 30793532 30793830 -54901924 - AluJb SINE Alu -22 290 1 2952 108 22 208 chr15 30793830 30794101 -54901653 - L1 LINE L1 -1349 4797 4477 626 214 41 36 chr15 30794107 30794303 -54901451 + L1M4 LINE L1 3633 3829 -2317 6011 169 14 1 chr15 30794303 30794828 -54900926 - L1PA13 LINE L1 0 6163 5646 1890 165 44 14 chr15 30794828 30795192 -54900562 + THE1C LTR MaLR 1 375 0 6011 169 14 1 chr15 30795192 30796583 -54899171 - L1PA13 LINE L1 -517 5646 4240 11363 200 22 3 chr15 30796686 30799213 -54896541 - L1PA13 LINE L1 -2384 3762 1189 778 164 71 0 chr15 30799348 30799555 -54896199 - L1 LINE L1 -2973 3173 2952 216 0 0 0 chr15 30799970 30799994 -54895760 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 420 360 81 9 chr15 30800545 30800767 -54894987 + MIR SINE MIR 17 254 -8 1294 251 55 49 chr15 30801369 30801840 -54893914 + LTR33 LTR ERVL 1 474 -47 22 0 0 0 chr15 30802450 30802472 -54893282 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr15 30802582 30802624 -54893130 + AT_rich Low_complexity Low_complexity 1 42 0 6289 91 9 3 chr15 30802633 30804339 -54891415 + L1PA13 LINE L1 4459 6161 -2 585 258 122 14 chr15 30804518 30804731 -54891023 - MIR SINE MIR -10 252 17 2359 113 0 0 chr15 30806286 30806645 -54889109 - AluY SINE Alu 0 359 1 433 313 93 78 chr15 30806898 30807407 -54888347 + L2 LINE L2 2543 3073 -199 589 257 4 41 chr15 30808475 30808720 -54887034 - L1ME LINE L1 -303 5818 5583 231 146 0 0 chr15 30810004 30810045 -54885709 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 1555 222 57 26 chr15 30811773 30812228 -54883526 - Charlie4a DNA MER1_type -19 489 21 449 286 15 0 chr15 30812356 30812489 -54883265 - MLT1J LTR MaLR -316 195 61 2122 109 20 13 chr15 30812490 30812794 -54882960 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr15 30813097 30813118 -54882636 + AT_rich Low_complexity Low_complexity 1 21 0 893 255 109 28 chr15 30813127 30813340 -54882414 - L2 LINE L2 0 3313 3064 2037 201 59 97 chr15 30813340 30814020 -54881734 + MLT1E1 LTR MaLR 1 654 0 893 255 109 28 chr15 30814020 30814128 -54881626 - L2 LINE L2 -249 3064 2966 1053 263 135 17 chr15 30814136 30814604 -54881150 - L2 LINE L2 -618 2696 2174 2708 90 0 0 chr15 30814682 30815037 -54880717 - THE1A LTR MaLR 0 355 1 10606 96 6 8 chr15 30815050 30816607 -54879147 - THE1A-int LTR MaLR -27 1553 1 2610 104 0 3 chr15 30816607 30816963 -54878791 - THE1A LTR MaLR 0 355 1 269 204 23 114 chr15 30816963 30817051 -54878703 - MIR SINE MIR -95 113 34 1392 201 19 29 chr15 30818091 30818399 -54877355 - AluJo SINE Alu -7 305 1 281 260 135 19 chr15 30819171 30819275 -54876479 + L2 LINE L2 3153 3268 -4 21 0 0 0 chr15 30819355 30819376 -54876378 + AT_rich Low_complexity Low_complexity 1 21 0 412 244 75 12 chr15 30819514 30819674 -54876080 - L1MC/D LINE L1 -1999 5809 5640 190 194 90 30 chr15 30819885 30819952 -54875802 + MER5C DNA MER1_type 9 79 -245 317 94 281 0 chr15 30820386 30820450 -54875304 - L1PA16 LINE L1 -5 6864 6783 6394 189 23 18 chr15 30820551 30822265 -54873489 - L1PA16 LINE L1 -110 6759 5037 2061 123 3 3 chr15 30822265 30822565 -54873189 + AluSx SINE Alu 5 304 -8 6394 189 23 18 chr15 30822565 30823200 -54872554 - L1PA16 LINE L1 -1832 5037 4407 1202 268 39 42 chr15 30823301 30823693 -54872061 + L1M4 LINE L1 2870 3261 -2885 243 103 0 0 chr15 30823693 30823732 -54872022 + (CA)n Simple_repeat Simple_repeat 2 40 0 1202 268 39 42 chr15 30823732 30824034 -54871720 + L1M4 LINE L1 3261 3562 -2584 1391 254 115 40 chr15 30824191 30824744 -54871010 + L1M4 LINE L1 3865 4375 -1771 2610 99 6 0 chr15 30824744 30825097 -54870657 + THE1A LTR MaLR 1 355 0 1391 254 115 40 chr15 30825097 30825663 -54870091 + L1M4 LINE L1 4375 5068 -1078 2048 256 39 7 chr15 30825771 30826471 -54869283 - L1PA16 LINE L1 -2989 3860 3139 2953 165 13 6 chr15 30826473 30827000 -54868754 - L1PA16 LINE L1 -6318 531 1 289 333 83 30 chr15 30827299 30827431 -54868323 - L2 LINE L2 -1 3271 3133 401 295 16 16 chr15 30828297 30828419 -54867335 - MIR SINE MIR -94 168 47 339 25 0 0 chr15 30828461 30828501 -54867253 + (GA)n Simple_repeat Simple_repeat 2 41 0 242 309 44 55 chr15 30828913 30829094 -54866660 + L2 LINE L2 2474 2652 -662 352 344 72 77 chr15 30829109 30829472 -54866282 - L2 LINE L2 0 3272 2912 1850 266 95 9 chr15 30829667 30830226 -54865528 + MLT2E LTR ERVL 22 628 0 21 36 0 0 chr15 30831810 30831838 -54863916 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 30832506 30832557 -54863197 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 30832566 30832653 -54863101 + MER20 DNA MER1_type 130 218 -1 39615 43 27 0 chr15 30832747 30838726 -54857028 + L1PA2 LINE L1 11 6155 0 240 35 0 0 chr15 30839845 30839874 -54855880 + (TC)n Simple_repeat Simple_repeat 2 30 0 384 336 54 36 chr15 30839876 30840156 -54855598 - L3 LINE CR1 -107 1470 1186 371 275 191 6 chr15 30841170 30841348 -54854406 + MIR SINE MIR 52 262 0 198 372 0 26 chr15 30841395 30841473 -54854281 + MIR SINE MIR 17 92 -116 279 303 112 3 chr15 30841639 30841828 -54853926 - MIR SINE MIR 0 262 3 359 303 61 57 chr15 30842070 30842175 -54853579 + MIR SINE MIR 34 137 -125 22 0 0 0 chr15 30842175 30842197 -54853557 + AT_rich Low_complexity Low_complexity 1 22 0 359 303 61 57 chr15 30842197 30842298 -54853456 + MIR SINE MIR 137 262 0 739 236 144 31 chr15 30843330 30843559 -54852195 + MIR SINE MIR 5 259 -3 351 262 63 40 chr15 30843610 30843736 -54852018 - MIR SINE MIR -48 214 86 306 291 34 26 chr15 30845847 30845964 -54849790 + MIR3 SINE MIR 81 198 -10 190 387 189 0 chr15 30846677 30846783 -54848971 + L2 LINE L2 3147 3272 0 188 257 0 0 chr15 30847614 30847649 -54848105 - MIR SINE MIR -124 84 50 2117 125 0 10 chr15 30847674 30847978 -54847776 - AluSg SINE Alu -9 301 1 225 0 0 0 chr15 30847985 30848010 -54847744 + (T)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr15 30848693 30848721 -54847033 + AT_rich Low_complexity Low_complexity 1 28 0 301 277 0 12 chr15 30848755 30848838 -54846916 - L1ME LINE L1 -513 5608 5527 224 130 19 37 chr15 30848845 30848899 -54846855 + T-rich Low_complexity Low_complexity 2 54 0 204 225 0 0 chr15 30850062 30850102 -54845652 + A-rich Low_complexity Low_complexity 2 41 0 435 78 0 0 chr15 30851705 30851769 -54843985 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 362 309 34 68 chr15 30851947 30852154 -54843600 + MIR3 SINE MIR 1 200 -8 1087 147 0 0 chr15 30852464 30852627 -54843127 + FRAM SINE Alu 4 166 0 216 351 9 45 chr15 30852690 30852801 -54842953 - L2 LINE L2 -6 3266 3160 248 306 71 12 chr15 30853839 30854021 -54841733 + MIR SINE MIR 44 262 0 5484 172 29 35 chr15 30854056 30854237 -54841517 + L1MA10 LINE L1 4208 4389 -1945 1787 155 36 26 chr15 30854237 30854546 -54841208 + AluJb SINE Alu 1 312 0 5484 172 29 35 chr15 30854546 30856475 -54839279 + L1MA10 LINE L1 4389 6323 -11 1397 189 10 50 chr15 30857921 30858222 -54837532 - AluJb SINE Alu -23 289 1 195 363 159 5 chr15 30858418 30858619 -54837135 + L2 LINE L2 2572 2803 -511 260 203 13 38 chr15 30859122 30859201 -54836553 - L1ME4a LINE L1 -103 6018 5942 239 194 30 0 chr15 30859339 30859406 -54836348 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5371 232 49 15 chr15 30859506 30862463 -54833291 - L1MB2 LINE L1 -19 6152 3067 355 359 38 23 chr15 30862999 30863130 -54832624 - L2 LINE L2 -18 3254 3122 21713 137 13 5 chr15 30863233 30868017 -54827737 + L1PA10 LINE L1 1998 6831 0 262 198 121 33 chr15 30868226 30868317 -54827437 - L2 LINE L2 -262 3010 2912 188 313 48 72 chr15 30868519 30868602 -54827152 - L2 LINE L2 0 3272 3192 331 287 14 63 chr15 30868680 30868823 -54826931 - L2 LINE L2 -253 3060 2925 494 265 55 31 chr15 30869954 30870184 -54825570 + MIR SINE MIR 16 248 -14 685 310 27 19 chr15 30872262 30872520 -54823234 + MIR SINE MIR 3 262 0 288 257 143 9 chr15 30872929 30873034 -54822720 - MER5A DNA MER1_type -70 119 1 294 223 205 27 chr15 30873045 30873157 -54822597 + MIR SINE MIR 21 152 -110 421 107 0 27 chr15 30873802 30873877 -54821877 - L1PA11 LINE L1 -1 6173 6101 2571 57 0 0 chr15 30873888 30874184 -54821570 - AluY SINE Alu -15 296 1 23 54 0 0 chr15 30874609 30874646 -54821108 + AT_rich Low_complexity Low_complexity 1 37 0 477 170 95 82 chr15 30874674 30874821 -54820933 - MLT1C LTR MaLR -314 153 5 7601 25 2 0 chr15 30875243 30876499 -54819255 + L1PA4 LINE L1 4895 6152 -3 1551 211 102 20 chr15 30877002 30877184 -54818570 + MLT1D LTR MaLR 1 167 -338 342 0 0 0 chr15 30877184 30877222 -54818532 + (CA)n Simple_repeat Simple_repeat 2 39 0 1551 211 102 20 chr15 30877222 30877499 -54818255 + MLT1D LTR MaLR 167 498 -7 674 196 31 141 chr15 30877878 30878204 -54817550 - MLT2B1 LTR ERVL -186 334 45 780 250 32 23 chr15 30878490 30878706 -54817048 - MIR SINE MIR -12 250 33 839 281 56 0 chr15 30879387 30879654 -54816100 + LTR16A LTR ERVL 169 450 0 565 314 122 37 chr15 30879665 30880238 -54815516 - HAL1 LINE L1 -1881 626 5 24 32 0 0 chr15 30883852 30883883 -54811871 + AT_rich Low_complexity Low_complexity 1 31 0 441 298 39 120 chr15 30884800 30885209 -54810545 - L2 LINE L2 0 3272 2897 347 83 0 0 chr15 30886147 30886195 -54809559 + MLT1A1 LTR MaLR 103 150 -215 899 123 0 0 chr15 30886203 30886325 -54809429 + FLAM_C SINE Alu 3 124 -9 405 311 197 6 chr15 30886482 30886665 -54809089 + MIR SINE MIR 42 259 -3 216 67 0 0 chr15 30888040 30888070 -54807684 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 341 98 0 chr15 30888910 30889042 -54806712 + L2 LINE L2 2837 2981 -291 335 320 85 0 chr15 30890439 30890592 -54805162 + MIR3 SINE MIR 33 198 -10 268 346 131 0 chr15 30890856 30890963 -54804791 - L2 LINE L2 -56 3216 3096 247 260 19 15 chr15 30891053 30891158 -54804596 - MIR SINE MIR -71 137 33 630 242 27 7 chr15 30893054 30893203 -54802551 - MIR3 SINE MIR -3 205 54 306 277 71 27 chr15 30893619 30893731 -54802023 + L2 LINE L2 3149 3265 -7 612 227 162 13 chr15 30893769 30893923 -54801831 + MER5A DNA MER1_type 6 182 -7 2125 142 7 0 chr15 30894071 30894381 -54801373 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 30895929 30895953 -54799801 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 309 209 0 chr15 30896902 30897103 -54798651 - MIR SINE MIR -5 257 15 9164 219 16 9 chr15 30897242 30897576 -54798178 - L1PA16 LINE L1 -10 6156 5826 2030 131 7 0 chr15 30897576 30897866 -54797888 - AluSx SINE Alu -20 292 1 9164 219 16 9 chr15 30897866 30900669 -54795085 - L1PA16 LINE L1 -340 5826 3031 494 157 10 0 chr15 30900689 30900791 -54794963 + CT-rich Low_complexity Low_complexity 3 105 0 1884 190 0 6 chr15 30900793 30901104 -54794650 - AluSx SINE Alu -3 309 1 3124 249 20 60 chr15 30901108 30902102 -54793652 - L1PA16 LINE L1 -3113 3033 2042 330 113 0 0 chr15 30902102 30902155 -54793599 + Alu SINE Alu 243 295 -5 3124 249 20 60 chr15 30902155 30902331 -54793423 - L1PA16 LINE L1 -4104 2042 1860 708 20 0 30 chr15 30902434 30902535 -54793219 + (TTC)n Simple_repeat Simple_repeat 3 100 0 591 281 55 5 chr15 30902680 30902879 -54792875 + MER3 DNA MER1_type 1 209 0 2774 189 57 37 chr15 30903305 30904417 -54791337 + L1M4 LINE L1 4627 5755 -429 762 237 65 0 chr15 30904495 30904681 -54791073 + MIR SINE MIR 58 255 -7 391 314 83 7 chr15 30904711 30904897 -54790857 + MIR3 SINE MIR 8 206 -2 1412 131 0 0 chr15 30904956 30905147 -54790607 + AluSq SINE Alu 24 214 -99 22 35 0 0 chr15 30905513 30905542 -54790212 + AT_rich Low_complexity Low_complexity 1 29 0 6469 145 21 20 chr15 30906656 30907475 -54788279 - L1MA8 LINE L1 0 6291 5475 1853 157 14 7 chr15 30907475 30907762 -54787992 - AluJo SINE Alu -23 289 1 6469 145 21 20 chr15 30907762 30907872 -54787882 - L1MA8 LINE L1 -816 5475 5367 6040 120 74 62 chr15 30907872 30908662 -54787092 + Tigger3b DNA MER2_type 2 812 -2216 1714 152 6 76 chr15 30908662 30908991 -54786763 + AluSx SINE Alu 5 310 -2 6040 120 74 62 chr15 30908991 30909416 -54786338 + Tigger3b DNA MER2_type 812 1231 0 6469 145 21 20 chr15 30909416 30910719 -54785035 - L1MA8 LINE L1 -924 5367 4045 404 229 0 21 chr15 30910813 30910909 -54784845 - MLT2E LTR ERVL -519 109 16 200 274 0 48 chr15 30911257 30911319 -54784435 + L2 LINE L2 3242 3300 -13 730 165 135 0 chr15 30911322 30911455 -54784299 + FAM SINE Alu 18 168 -17 184 276 10 102 chr15 30912546 30912644 -54783110 - L3 LINE CR1 -590 987 899 628 321 210 32 chr15 30913153 30913773 -54781981 - L3 LINE CR1 -419 1158 429 1868 198 61 2 chr15 30913785 30914210 -54781544 + L1ME2 LINE L1 5609 6058 -106 1130 244 55 37 chr15 30914231 30914613 -54781141 + MLT1B LTR MaLR 2 390 0 307 291 39 47 chr15 30914663 30914790 -54780964 - L1ME2 LINE L1 -132 6032 5907 271 257 80 18 chr15 30914791 30914904 -54780850 + MIR SINE MIR 137 256 -6 2015 134 0 0 chr15 30916016 30916300 -54779454 + AluSq SINE Alu 1 284 -29 293 82 20 0 chr15 30916303 30916352 -54779402 + (CAA)n Simple_repeat Simple_repeat 2 51 0 279 0 0 0 chr15 30916781 30916812 -54778942 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr15 30917253 30917275 -54778479 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 30917539 30917568 -54778186 + AT_rich Low_complexity Low_complexity 1 29 0 480 77 0 0 chr15 30917568 30917633 -54778121 + (TG)n Simple_repeat Simple_repeat 2 66 0 278 304 88 64 chr15 30917751 30917876 -54777878 + MER5A DNA MER1_type 59 186 -3 495 267 176 11 chr15 30918433 30918620 -54777134 + MIR SINE MIR 12 229 -33 1857 123 68 41 chr15 30922597 30922962 -54772792 + THE1C LTR MaLR 1 375 0 531 239 67 81 chr15 30923134 30923343 -54772411 - MIR SINE MIR -10 252 47 365 261 314 11 chr15 30924671 30924859 -54770895 + MIR SINE MIR 13 257 -5 340 250 0 46 chr15 30925196 30925304 -54770450 - MER103 DNA DNA -54 112 10 1594 187 16 29 chr15 30925410 30925726 -54770028 + AluJb SINE Alu 1 312 0 216 0 0 0 chr15 30925755 30925779 -54769975 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 364 65 26 chr15 30927407 30927561 -54768193 - L2 LINE L2 -16 3256 3097 374 265 28 81 chr15 30927782 30927993 -54767761 - LTR67 LTR ERVL -2 555 356 1104 202 206 0 chr15 30928419 30928701 -54767053 + MSTD LTR MaLR 5 344 -52 191 167 0 21 chr15 30929080 30929128 -54766626 + CT-rich Low_complexity Low_complexity 2 48 0 979 128 0 27 chr15 30929151 30929476 -54766278 + (TTTC)n Simple_repeat Simple_repeat 1 496 -44 243 0 0 0 chr15 30929476 30929503 -54766251 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 979 128 0 27 chr15 30929503 30929547 -54766207 + (TTTC)n Simple_repeat Simple_repeat 496 540 0 1489 11 0 11 chr15 30929547 30929728 -54766026 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 627 14 0 0 chr15 30929728 30929800 -54765954 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 997 174 18 59 chr15 30929860 30930079 -54765675 + MER20 DNA MER1_type 7 216 -3 320 155 0 0 chr15 30930298 30930356 -54765398 - MER81 DNA DNA 0 114 57 22 70 0 0 chr15 30931764 30931807 -54763947 + AT_rich Low_complexity Low_complexity 1 43 0 290 275 7 94 chr15 30933232 30933370 -54762384 + L2 LINE L2 2921 3046 -226 243 316 11 53 chr15 30936096 30936191 -54759563 - MER5A DNA MER1_type 0 189 99 213 288 89 41 chr15 30936433 30936579 -54759175 - L3b LINE CR1 -9 1574 1422 1033 252 22 14 chr15 30936867 30937145 -54758609 - L3b LINE CR1 -200 1383 1104 842 252 93 5 chr15 30937230 30937444 -54758310 + MIR SINE MIR 1 233 -29 285 349 9 11 chr15 30937626 30937754 -54758000 + MIR SINE MIR 27 151 -66 504 330 63 17 chr15 30938012 30938251 -54757503 + MIR SINE MIR 1 250 -12 366 236 87 72 chr15 30938813 30939021 -54756733 - L1ME4a LINE L1 -11 6110 5900 189 196 0 0 chr15 30939037 30939083 -54756671 + (TA)n Simple_repeat Simple_repeat 1 46 0 256 285 76 6 chr15 30939152 30939310 -54756444 - L1ME4a LINE L1 -313 5808 5640 186 43 0 0 chr15 30940283 30940306 -54755448 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 351 262 63 40 chr15 30942645 30942771 -54752983 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 30942822 30943051 -54752703 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 30944083 30944311 -54751443 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 30944553 30944742 -54751012 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 30944908 30944986 -54750768 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 30945033 30945211 -54750543 - MIR SINE MIR 0 262 52 385 333 80 22 chr15 30946229 30946505 -54749249 + L3 LINE CR1 1179 1470 -107 240 35 0 0 chr15 30946507 30946536 -54749218 + (GA)n Simple_repeat Simple_repeat 2 30 0 40745 35 21 1 chr15 30947654 30953686 -54742068 - L1PA2 LINE L1 -1 6154 1 1936 133 66 36 chr15 30953766 30954128 -54741626 + THE1C LTR MaLR 3 375 0 217 246 46 15 chr15 30955445 30955510 -54740244 - L2 LINE L2 0 3313 3247 8292 111 9 31 chr15 30955550 30956528 -54739226 - HSMAR1 DNA Mariner -9 1278 335 2046 131 3 3 chr15 30956528 30956826 -54738928 + AluSx SINE Alu 1 298 -14 8292 111 9 31 chr15 30956826 30957153 -54738601 - HSMAR1 DNA Mariner -952 335 2 194 356 130 32 chr15 30957278 30957525 -54738229 - L2 LINE L2 -190 3082 2812 258 266 16 16 chr15 30957802 30957866 -54737888 + L2 LINE L2 3246 3309 -4 890 252 57 0 chr15 30958141 30958351 -54737403 - MIR SINE MIR 0 262 41 231 366 48 43 chr15 30959047 30959233 -54736521 + L3 LINE CR1 1249 1435 -142 304 308 0 0 chr15 30959320 30959398 -54736356 - MIR SINE MIR -183 79 2 1986 259 292 5 chr15 30959734 30960860 -54734894 - L2 LINE L2 -1 3312 1838 207 327 0 0 chr15 30960950 30961002 -54734752 - L2 LINE L2 -12 3301 3250 768 275 64 21 chr15 30961572 30961805 -54733949 - MIR SINE MIR -17 245 3 2077 186 7 24 chr15 30961893 30962288 -54733466 + Tigger1 DNA MER2_type 1 390 -2028 2574 207 14 53 chr15 30962288 30962925 -54732829 + LTR9 LTR ERV1 1 612 0 2077 186 7 24 chr15 30962925 30962948 -54732806 + Tigger1 DNA MER2_type 390 412 -2006 485 306 126 0 chr15 30963009 30963264 -54732490 - L1ME LINE L1 -363 5758 5472 11050 128 59 10 chr15 30963358 30964797 -54730957 + Tigger1 DNA MER2_type 398 1956 -462 7463 32 4 3 chr15 30964797 30965785 -54729969 + L1PA4 LINE L1 5167 6155 0 11050 128 59 10 chr15 30965785 30966264 -54729490 + Tigger1 DNA MER2_type 1956 2410 -8 265 275 11 55 chr15 30966309 30966400 -54729354 - MIR SINE MIR -151 111 25 321 311 51 45 chr15 30966504 30966681 -54729073 + MIR SINE MIR 26 203 -59 269 260 0 3 chr15 30967443 30967510 -54728244 + MIR SINE MIR 78 141 -67 332 281 88 0 chr15 30967523 30967637 -54728117 - MIR SINE MIR -2 260 137 7658 11 0 0 chr15 30968060 30969411 -54726343 - L1HS LINE L1 0 6155 4805 532 283 33 28 chr15 30969630 30969810 -54725944 - MIR SINE MIR 0 262 82 426 229 0 0 chr15 30970495 30970617 -54725137 + GA-rich Low_complexity Low_complexity 3 124 0 404 228 61 18 chr15 30970632 30970746 -54725008 - MIR SINE MIR -52 210 92 237 313 0 0 chr15 30970813 30970880 -54724874 + L2 LINE L2 3246 3312 -1 408 289 146 39 chr15 30971013 30971369 -54724385 + MLT1J2 LTR MaLR 55 448 -2 2037 148 48 0 chr15 30972994 30973325 -54722429 + MER7A DNA MER2_type 1 345 -1 657 271 5 21 chr15 30974581 30974769 -54720985 - MIR SINE MIR 0 262 78 209 325 0 25 chr15 30974811 30974891 -54720863 + CT-rich Low_complexity Low_complexity 2 79 0 181 309 0 15 chr15 30974891 30974959 -54720795 - L2 LINE L2 -20 3252 3186 266 321 30 15 chr15 30975802 30975973 -54719781 - MIR SINE MIR -38 224 52 253 372 146 0 chr15 30976114 30976313 -54719441 - L2 LINE L2 -537 2777 2550 420 321 0 0 chr15 30976723 30976829 -54718925 + L2 LINE L2 3208 3313 0 28 29 0 0 chr15 30977785 30977820 -54717934 + AT_rich Low_complexity Low_complexity 1 35 0 213 205 0 0 chr15 30977847 30977886 -54717868 + A-rich Low_complexity Low_complexity 5 43 0 320 276 222 11 chr15 30978192 30978377 -54717377 - MIR SINE MIR -19 243 20 957 39 77 23 chr15 30979765 30979895 -54715859 + MER85 DNA T2_type 1 137 -2 264 250 135 0 chr15 30980775 30980879 -54714875 - L1M3 LINE L1 -673 5498 5381 400 297 126 48 chr15 30981116 30983352 -54712402 - L1M3 LINE L1 -1088 5058 2998 2421 92 0 3 chr15 30983352 30983666 -54712088 - AluSq SINE Alu 0 313 1 400 297 126 48 chr15 30983666 30983833 -54711921 - L1M3 LINE L1 -3148 2998 2845 2037 167 0 34 chr15 30983833 30984211 -54711543 + MLT1A1 LTR MaLR 1 365 0 400 297 126 48 chr15 30984211 30984438 -54711316 - L1M3 LINE L1 -3301 2845 2221 22 0 0 0 chr15 30985308 30985330 -54710424 + AT_rich Low_complexity Low_complexity 1 22 0 272 259 224 12 chr15 30985375 30985460 -54710294 + MIR3 SINE MIR 15 117 -91 346 211 126 0 chr15 30985547 30985642 -54710112 - MER103 DNA DNA -57 109 3 492 297 141 7 chr15 30987063 30987353 -54708401 - LTR16A LTR ERVL -3 447 119 317 261 40 102 chr15 30987425 30987601 -54708153 + MIR SINE MIR 97 261 -1 292 267 44 11 chr15 30988812 30988902 -54706852 - MIR SINE MIR -86 176 84 537 358 58 9 chr15 30989001 30989227 -54706527 - MIR SINE MIR -10 252 16 240 299 13 0 chr15 30989312 30989389 -54706365 + MLT1L LTR MaLR 122 199 -416 200 176 0 0 chr15 30990334 30990368 -54705386 + GA-rich Low_complexity Low_complexity 1 34 0 2261 181 50 37 chr15 30990426 30991000 -54704754 - L1MD3 LINE L1 -10 7985 7404 611 202 8 0 chr15 30991000 30991124 -54704630 - MLT1F1 LTR MaLR -442 125 1 244 73 109 36 chr15 30991125 30991180 -54704574 - L1MD3 LINE L1 -718 7277 7219 498 258 116 5 chr15 30991237 30991427 -54704327 + LTR33 LTR ERVL 1 211 -310 3937 117 15 28 chr15 30991479 30992296 -54703458 + L1PA13 LINE L1 4883 5832 -331 2169 125 7 0 chr15 30992296 30992593 -54703161 + AluSx SINE Alu 1 299 -13 3937 117 15 28 chr15 30992593 30992919 -54702835 + L1PA13 LINE L1 5832 6161 -2 378 203 80 68 chr15 30992978 30993141 -54702613 + LTR33 LTR ERVL 357 521 0 22 0 0 0 chr15 30993178 30993200 -54702554 + AT_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chr15 30993311 30993351 -54702403 + AT_rich Low_complexity Low_complexity 1 40 0 1023 134 0 5 chr15 30993353 30993539 -54702215 - L1MA8 LINE L1 -6 6285 6101 2235 125 0 0 chr15 30993549 30993854 -54701900 - AluSx SINE Alu -7 305 1 359 355 0 0 chr15 30993950 30994060 -54701694 - MIR SINE MIR -113 149 40 244 282 10 19 chr15 30994359 30994462 -54701292 - MER103 DNA DNA -52 114 13 21 36 0 0 chr15 30994524 30994552 -54701202 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 30995220 30995271 -54700483 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 30995280 30995367 -54700387 + MER20 DNA MER1_type 130 218 -1 38607 53 30 1 chr15 30995461 31001410 -54694344 + L1PA5 LINE L1 11 6139 -15 264 30 0 0 chr15 31001410 31001443 -54694311 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 143 0 0 chr15 31002270 31002305 -54693449 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 231 381 30 30 chr15 31003634 31003768 -54691986 + MIR3 SINE MIR 7 140 -68 2391 109 0 0 chr15 31004183 31004495 -54691259 + AluSx SINE Alu 1 312 0 1262 216 111 33 chr15 31004733 31004947 -54690807 - MSTD LTR MaLR -6 390 135 2442 57 3 0 chr15 31004947 31005244 -54690510 - AluY SINE Alu -13 298 1 1262 216 111 33 chr15 31005244 31005391 -54690363 - MSTD LTR MaLR -261 135 1 21 82 0 0 chr15 31005751 31005800 -54689954 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr15 31007017 31007068 -54688686 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 31009532 31009556 -54686198 + AT_rich Low_complexity Low_complexity 1 24 0 418 342 13 20 chr15 31010189 31010338 -54685416 + MIR3 SINE MIR 19 166 -42 1956 116 53 0 chr15 31012879 31013164 -54682590 + AluSx SINE Alu 1 300 -12 200 339 31 32 chr15 31013304 31013455 -54682299 - MIR SINE MIR -18 190 37 625 251 39 17 chr15 31014255 31014434 -54681320 + MIR SINE MIR 66 248 -14 185 180 20 0 chr15 31014553 31014603 -54681151 + GA-rich Low_complexity Low_complexity 2 52 0 198 278 69 28 chr15 31016257 31016329 -54679425 - L2 LINE L2 -50 3222 3148 195 129 0 0 chr15 31016631 31016662 -54679092 + L2 LINE L2 3276 3306 -7 344 260 159 18 chr15 31017310 31017487 -54678267 + MIR SINE MIR 34 225 -37 201 119 51 34 chr15 31017661 31017682 -54678072 + T-rich Low_complexity Low_complexity 6 25 -40 3572 75 9 45 chr15 31017682 31018218 -54677536 - L1PA8 LINE L1 -8 6164 5648 201 119 51 34 chr15 31018218 31018255 -54677499 + T-rich Low_complexity Low_complexity 25 65 0 272 226 157 0 chr15 31018260 31018362 -54677392 + MLT1C LTR MaLR 1 118 -349 1703 207 66 5 chr15 31018387 31018812 -54676942 - MLT1C LTR MaLR 0 467 17 949 67 28 28 chr15 31022238 31022418 -54673336 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 311 285 80 46 chr15 31023854 31024005 -54671749 + MIR3 SINE MIR 36 191 -17 737 268 16 5 chr15 31024112 31024302 -54671452 - MIR SINE MIR -42 220 29 217 246 18 18 chr15 31024351 31024408 -54671346 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 264 86 22 chr15 31026128 31026254 -54669500 + L1M4 LINE L1 4883 5000 -1194 288 53 0 0 chr15 31026254 31026292 -54669462 + (CA)n Simple_repeat Simple_repeat 1 38 0 370 264 86 22 chr15 31026292 31026670 -54669084 + L1M4 LINE L1 5000 5426 -768 188 186 17 0 chr15 31026744 31026803 -54668951 + (TA)n Simple_repeat Simple_repeat 1 60 0 419 228 60 11 chr15 31026806 31026951 -54668803 - L1MC4 LINE L1 -232 7763 7521 771 256 82 41 chr15 31026974 31027388 -54668366 - L1MC4a LINE L1 -1736 6072 5642 330 242 63 0 chr15 31028915 31029010 -54666744 + MIR SINE MIR 119 219 -43 426 286 31 52 chr15 31030019 31030211 -54665543 + MIR SINE MIR 8 195 -67 758 261 33 53 chr15 31030269 31030572 -54665182 - LTR16A1 LTR ERVL -3 454 158 546 309 68 62 chr15 31030702 31031071 -54664683 - L2 LINE L2 -64 3208 2838 216 218 0 36 chr15 31031234 31031289 -54664465 + (CTA)n Simple_repeat Simple_repeat 1 53 0 198 329 47 35 chr15 31031314 31031399 -54664355 + L2 LINE L2 3111 3196 -76 319 240 154 10 chr15 31031559 31031663 -54664091 - L2 LINE L2 -4 3268 3150 939 275 36 7 chr15 31031668 31031977 -54663777 + MER20B DNA MER1_type 4 321 -462 2596 184 19 4 chr15 31032043 31032570 -54663184 - L1MB2 LINE L1 -42 6129 5595 1296 227 42 26 chr15 31032599 31033027 -54662727 + MER20B DNA MER1_type 340 774 -9 2556 57 0 0 chr15 31033185 31033486 -54662268 + AluY SINE Alu 1 301 -10 1619 207 25 15 chr15 31033652 31034057 -54661697 + MER20B DNA MER1_type 373 781 -2 950 253 37 30 chr15 31034454 31034750 -54661004 - L2 LINE L2 0 3313 3016 2082 104 38 0 chr15 31035026 31035314 -54660440 + AluSx SINE Alu 1 299 -13 294 320 47 31 chr15 31035888 31036016 -54659738 + MIR SINE MIR 22 151 -111 190 288 75 38 chr15 31036083 31036163 -54659591 + L2 LINE L2 3182 3264 -8 225 0 0 0 chr15 31036575 31036600 -54659154 + (TG)n Simple_repeat Simple_repeat 2 26 0 250 239 15 15 chr15 31036968 31037035 -54658719 + (TA)n Simple_repeat Simple_repeat 1 67 0 2878 3 0 0 chr15 31037321 31037632 -54658122 + AluY SINE Alu 1 311 0 194 0 39 0 chr15 31038781 31038807 -54656947 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 296 70 0 chr15 31038958 31039073 -54656681 + MIR SINE MIR 90 212 -50 230 268 42 0 chr15 31039540 31039611 -54656143 - L2 LINE L2 -193 3079 3006 2922 210 112 38 chr15 31040279 31041269 -54654485 + Charlie1 DNA MER1_type 14 1076 -1685 1078 257 83 6 chr15 31041311 31041650 -54654104 + Charlie1 DNA MER1_type 1228 1592 -1169 2481 74 0 3 chr15 31042389 31042701 -54653053 + AluY SINE Alu 1 311 0 1186 199 9 38 chr15 31042701 31043018 -54652736 + Charlie1 DNA MER1_type 1583 1890 -871 304 218 55 55 chr15 31043597 31043707 -54652047 + L1M4 LINE L1 3084 3193 -2953 254 364 0 0 chr15 31043763 31043939 -54651815 + A-rich Low_complexity Low_complexity 1 176 0 304 209 114 85 chr15 31043953 31044154 -54651600 + L1M4 LINE L1 3074 3280 -2866 604 175 79 8 chr15 31044181 31044307 -54651447 + Charlie1 DNA MER1_type 1923 2057 -704 272 279 108 0 chr15 31044322 31044372 -54651382 - L1ME1 LINE L1 -22 6144 6101 198 0 0 0 chr15 31044372 31044394 -54651360 + (TA)n Simple_repeat Simple_repeat 1 22 0 272 279 108 0 chr15 31044394 31044454 -54651300 - L1ME1 LINE L1 -65 6101 6022 27 0 0 0 chr15 31044456 31044483 -54651271 + AT_rich Low_complexity Low_complexity 1 27 0 2104 174 12 2 chr15 31044491 31044893 -54650861 + L1MA7 LINE L1 5458 5863 -428 612 251 18 6 chr15 31044893 31045056 -54650698 - L1ME1 LINE L1 -148 6018 5854 2421 193 98 12 chr15 31045059 31045721 -54650033 + Charlie1 DNA MER1_type 2043 2761 0 321 26 0 0 chr15 31047588 31047626 -54648128 + (TG)n Simple_repeat Simple_repeat 2 39 0 645 230 19 8 chr15 31048157 31048365 -54647389 - L1MC3 LINE L1 -1 7784 6117 303 325 157 15 chr15 31048842 31049116 -54646638 + HAL1 LINE L1 878 1190 -1317 294 331 6 18 chr15 31049119 31049298 -54646456 + L1PA15 LINE L1 5935 6111 -50 207 204 45 0 chr15 31049903 31049947 -54645807 + L3 LINE CR1 1275 1320 -257 645 291 87 30 chr15 31050163 31050462 -54645292 - L2 LINE L2 -1 3312 2997 22 0 0 0 chr15 31050789 31050811 -54644943 + AT_rich Low_complexity Low_complexity 1 22 0 588 294 66 5 chr15 31051609 31051820 -54643934 - MIR SINE MIR -6 256 33 2190 194 71 12 chr15 31052803 31052845 -54642909 - MLT2B1 LTR ERVL 0 520 482 456 35 0 0 chr15 31052845 31052903 -54642851 + (CA)n Simple_repeat Simple_repeat 2 59 0 2190 194 71 12 chr15 31052903 31053351 -54642403 - MLT2B1 LTR ERVL -38 482 1 267 259 25 12 chr15 31053362 31053443 -54642311 + HsTC2 DNA Tc2 1311 1392 -506 235 268 12 12 chr15 31054983 31055065 -54640689 + (TA)n Simple_repeat Simple_repeat 2 83 0 2429 84 0 3 chr15 31055680 31055989 -54639765 + AluY SINE Alu 1 308 -3 5154 132 13 50 chr15 31056548 31057489 -54638265 - L1MC1 LINE L1 0 6333 5428 2180 138 28 25 chr15 31057861 31058224 -54637530 + THE1B LTR MaLR 1 364 0 333 0 0 0 chr15 31058361 31058398 -54637356 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 278 63 31 chr15 31058415 31058582 -54637172 + MIR SINE MIR 36 206 -56 346 326 16 49 chr15 31058588 31058772 -54636982 + MER5B DNA MER1_type 1 178 0 2466 68 0 13 chr15 31060632 31060942 -54634812 - AluY SINE Alu -5 306 1 30 0 0 0 chr15 31061355 31061385 -54634369 + AT_rich Low_complexity Low_complexity 1 30 0 240 354 0 0 chr15 31061443 31061522 -54634232 - MER91 DNA MER1_type -62 128 50 421 313 27 38 chr15 31061631 31061816 -54633938 + MIR SINE MIR 38 218 -44 1985 135 0 26 chr15 31061888 31062192 -54633562 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr15 31062192 31062213 -54633541 + (TA)n Simple_repeat Simple_repeat 2 22 0 2239 115 0 7 chr15 31062241 31062545 -54633209 + AluSq SINE Alu 1 302 -11 340 333 80 6 chr15 31063375 31063537 -54632217 + MIR SINE MIR 77 250 -12 396 323 0 8 chr15 31063552 31063676 -54632078 + MIR SINE MIR 20 142 -66 191 382 13 13 chr15 31065207 31065283 -54630471 - L2 LINE L2 -96 3176 3101 228 61 20 41 chr15 31066094 31066143 -54629611 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 747 264 6 0 chr15 31066572 31066746 -54629008 + MER45A DNA AcHobo 3 177 -1 705 318 29 16 chr15 31067411 31067656 -54628098 + MIR SINE MIR 14 261 -1 405 0 0 0 chr15 31067669 31067714 -54628040 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 449 244 57 88 chr15 31068558 31068751 -54627003 + MIR SINE MIR 76 262 0 333 289 101 19 chr15 31069016 31069175 -54626579 + MIR SINE MIR 36 207 -55 306 313 102 17 chr15 31069175 31069351 -54626403 - MIR SINE MIR -22 240 50 226 314 59 0 chr15 31070699 31070801 -54624953 - MER96 DNA MER1_type? 0 175 68 375 345 68 29 chr15 31071304 31071510 -54624244 + MIR SINE MIR 46 259 -3 388 231 29 0 chr15 31074839 31074943 -54620811 - MER103 DNA DNA -57 109 3 653 301 69 0 chr15 31075294 31075510 -54620244 - MIR SINE MIR -30 232 2 515 345 46 6 chr15 31075809 31075983 -54619771 + MIR3 SINE MIR 3 183 -25 2059 252 89 41 chr15 31076136 31076870 -54618884 - MER21B LTR ERV1 -51 812 44 273 294 98 33 chr15 31077089 31077181 -54618573 + L2 LINE L2 3144 3241 -31 1291 269 158 8 chr15 31078880 31079534 -54616220 + L2 LINE L2 2559 3313 0 1937 163 31 0 chr15 31079571 31079926 -54615828 + MER47A DNA MER2_type 1 366 0 2564 160 5 5 chr15 31079926 31080370 -54615384 - MLT1C LTR MaLR -2 465 22 1980 161 3 176 chr15 31080369 31080983 -54614771 - MLT2B3 LTR ERVL -7 508 1 * 225 215 46 62 chr15 31081770 31081835 -54613919 + L2 LINE L2 3249 3312 -1 3149 262 93 27 chr15 31082171 31082339 -54613415 - L1MCc LINE L1 -4080 3042 2886 189 0 0 0 chr15 31082339 31082360 -54613394 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3149 262 93 27 chr15 31082360 31083696 -54612058 - L1MCc LINE L1 -4236 2886 1639 231 36 0 0 chr15 31083696 31083724 -54612030 + (TG)n Simple_repeat Simple_repeat 2 29 0 3149 262 93 27 chr15 31083724 31084861 -54610893 - L1MCc LINE L1 -5483 1639 17 231 269 19 0 chr15 31084927 31084979 -54610775 - MIR SINE MIR -133 75 23 571 166 18 24 chr15 31087068 31087237 -54608517 + CT-rich Low_complexity Low_complexity 3 170 0 24 0 0 0 chr15 31087683 31087707 -54608047 + AT_rich Low_complexity Low_complexity 1 24 0 16736 149 6 12 chr15 31088080 31088224 -54607530 + L1PA11 LINE L1 2264 2407 -3754 2106 112 0 14 chr15 31088224 31088540 -54607214 + AluSq SINE Alu 1 312 0 16736 149 6 12 chr15 31088540 31091628 -54604126 + L1PA11 LINE L1 2407 5476 -685 3859 68 2 2 chr15 31091628 31092128 -54603626 - L1PA8 LINE L1 -11 6161 5662 4930 92 11 11 chr15 31092245 31092959 -54602795 + L1PA11 LINE L1 5460 6173 -1 367 235 0 12 chr15 31092968 31093053 -54602701 - MER96B DNA MER1_type? -332 85 2 1547 173 111 4 chr15 31093189 31093460 -54602294 - AluSx SINE Alu -11 301 2 370 311 47 42 chr15 31093549 31093739 -54602015 - MIR SINE MIR -51 211 21 235 263 84 24 chr15 31093743 31093994 -54601760 + L1ME LINE L1 5068 5333 -813 598 295 47 7 chr15 31093997 31094309 -54601445 + L1ME LINE L1 5374 5696 -474 203 250 0 0 chr15 31094309 31094349 -54601405 + (CA)n Simple_repeat Simple_repeat 1 40 0 885 220 26 0 chr15 31094813 31095004 -54600750 + MLT1D LTR MaLR 304 499 -6 558 241 64 99 chr15 31095026 31095623 -54600131 + L1MEd LINE L1 682 1257 -4862 335 227 45 64 chr15 31095797 31095907 -54599847 + L1MEd LINE L1 1373 1480 -4651 996 177 103 29 chr15 31097764 31098007 -54597747 + MIR SINE MIR 2 262 0 350 275 126 22 chr15 31098098 31098280 -54597474 - L1ME3A LINE L1 -2 6168 5968 342 267 92 17 chr15 31098332 31098452 -54597302 - L1MC5 LINE L1 -50 7911 7783 202 271 51 0 chr15 31098633 31098692 -54597062 - MER5A DNA MER1_type -72 117 56 22 0 0 0 chr15 31099117 31099139 -54596615 + AT_rich Low_complexity Low_complexity 1 22 0 722 193 83 0 chr15 31100408 31100553 -54595201 - MER21B LTR ERV1 -379 484 328 828 217 11 21 chr15 31101054 31101243 -54594511 + MER5A DNA MER1_type 1 187 -2 528 309 100 13 chr15 31101352 31101582 -54594172 - MIR SINE MIR -6 256 7 230 296 84 0 chr15 31101749 31101820 -54593934 - L2 LINE L2 -1 3312 3236 248 323 31 31 chr15 31102114 31102210 -54593544 - L2 LINE L2 -17 3255 3160 330 375 62 0 chr15 31102612 31102788 -54592966 - L2 LINE L2 -189 3083 2897 508 284 80 17 chr15 31103910 31104086 -54591668 + MIR3 SINE MIR 20 206 -2 22 0 0 0 chr15 31104186 31104208 -54591546 + AT_rich Low_complexity Low_complexity 1 22 0 429 340 27 2 chr15 31104869 31105021 -54590733 + MIR3 SINE MIR 3 159 -49 339 234 110 55 chr15 31105237 31105382 -54590372 - L2 LINE L2 -5 3308 3156 281 301 12 36 chr15 31106479 31106562 -54589192 + L2 LINE L2 3149 3229 -43 2113 122 0 20 chr15 31106629 31106933 -54588821 + AluSc SINE Alu 1 298 -11 392 308 56 28 chr15 31107165 31107308 -54588446 + MIR3 SINE MIR 37 183 -25 638 285 124 34 chr15 31108270 31108491 -54587263 - MLT1H1 LTR MaLR -4 551 351 198 0 0 0 chr15 31108491 31108513 -54587241 + (TC)n Simple_repeat Simple_repeat 1 22 0 638 285 124 34 chr15 31108513 31108768 -54586986 - MLT1H1 LTR MaLR -204 351 32 24 0 0 0 chr15 31108829 31108853 -54586901 + AT_rich Low_complexity Low_complexity 1 24 0 372 205 197 0 chr15 31109448 31109575 -54586179 - MIR SINE MIR -60 202 51 231 170 0 0 chr15 31109833 31109880 -54585874 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 2009 137 11 29 chr15 31110957 31111307 -54584447 + MER2 DNA MER2_type 1 344 0 984 167 56 14 chr15 31112133 31112348 -54583406 + Charlie4 DNA MER1_type 60 283 -1678 599 207 32 27 chr15 31112349 31112537 -54583217 + Charlie4 DNA MER1_type 1773 1961 0 2023 132 17 3 chr15 31112557 31112853 -54582901 + AluSx SINE Alu 1 300 -12 233 317 97 23 chr15 31113195 31113814 -54581940 - L1MEd LINE L1 -3333 2796 2132 1216 249 32 46 chr15 31114116 31114554 -54581200 - MLT1D LTR MaLR -69 436 5 225 350 49 41 chr15 31114740 31114986 -54580768 - L1MEd LINE L1 -5664 455 208 484 161 46 0 chr15 31115289 31115376 -54580378 + MER58B DNA MER1_type 250 340 -1 197 354 38 0 chr15 31115798 31115877 -54579877 + MIR3 SINE MIR 121 202 -6 423 205 0 0 chr15 31115932 31116015 -54579739 + MIR SINE MIR 178 260 -2 419 286 106 89 chr15 31116468 31116863 -54578891 - LTR33 LTR ERVL 0 521 120 * 1464 200 75 52 chr15 31116861 31117050 -54578704 - MER31B LTR ERV1 -31 435 252 2153 124 124 18 chr15 31117050 31117437 -54578317 + MSTA LTR MaLR 1 428 0 1464 200 75 52 chr15 31117437 31117672 -54578082 - MER31B LTR ERV1 -214 252 1 208 191 95 0 chr15 31117673 31117715 -54578039 + MIR SINE MIR 59 104 -104 567 242 92 40 chr15 31117914 31118217 -54577537 + MLT1J LTR MaLR 1 302 -144 214 327 36 0 chr15 31118417 31118472 -54577282 - L2 LINE L2 -10 3303 3247 560 291 89 0 chr15 31119568 31119781 -54575973 - MIR SINE MIR -11 251 20 388 233 26 35 chr15 31120026 31120142 -54575612 - MIR SINE MIR -90 172 58 484 170 19 0 chr15 31120646 31120752 -54575002 - L1MA8 LINE L1 -5 6286 6179 243 257 29 29 chr15 31121565 31121668 -54574086 + MLT1I LTR MaLR 3 105 -304 241 239 80 0 chr15 31121668 31121756 -54573998 + LTR33 LTR ERVL 1 95 -426 2751 147 14 0 chr15 31121784 31122206 -54573548 - MSTA LTR MaLR 0 428 1 425 248 62 57 chr15 31123432 31123890 -54571864 - L1MC4a LINE L1 -7 6114 5660 773 154 0 0 chr15 31123947 31124064 -54571690 + AluJb SINE Alu 180 296 -16 310 316 0 29 chr15 31124066 31124205 -54571549 - HAL1 LINE L1 -11 2496 2362 * 455 241 51 99 chr15 31124203 31124421 -54571333 - HAL1 LINE L1 -409 2098 1906 2247 125 0 0 chr15 31124421 31124725 -54571029 - AluSx SINE Alu -8 304 1 455 241 51 99 chr15 31124725 31124901 -54570853 - HAL1 LINE L1 -601 1906 1723 367 258 117 8 chr15 31126084 31126204 -54569550 - MIR SINE MIR -107 155 23 405 264 28 0 chr15 31126465 31126571 -54569183 + MER81 DNA DNA 1 109 -5 270 322 21 56 chr15 31126577 31126720 -54569034 + LTR16A LTR ERVL 235 372 -78 215 220 33 88 chr15 31127907 31127998 -54567756 + MIR SINE MIR 126 211 -51 185 0 0 39 chr15 31128048 31128074 -54567680 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1953 114 93 0 chr15 31128496 31128776 -54566978 - AluSg SINE Alu -4 306 1 2129 252 29 36 chr15 31128859 31129475 -54566279 + L1MD3 LINE L1 4809 4963 -1183 1874 106 3 48 chr15 31129475 31129767 -54565987 + AluY SINE Alu 1 279 -32 2129 252 29 36 chr15 31129767 31130199 -54565555 + L1MD3 LINE L1 4963 5396 -750 276 102 322 0 chr15 31130204 31130263 -54565491 + MADE1 DNA Mariner 1 78 -2 371 132 0 77 chr15 31130265 31130311 -54565443 + L1MD3 LINE L1 5859 5896 -2099 2710 167 5 72 chr15 31130311 31130863 -54564891 - MLT2B2 LTR ERVL 0 515 1 371 132 0 77 chr15 31130863 31130907 -54564847 + L1MD3 LINE L1 5896 5942 -2053 466 239 18 28 chr15 31130909 31131018 -54564736 - MIR SINE MIR -147 115 8 216 362 53 14 chr15 31132083 31132290 -54563464 + L2 LINE L2 1883 2097 -1217 2567 150 44 2 chr15 31133724 31134176 -54561578 + MER31A LTR ERV1 1 471 -14 2211 102 3 3 chr15 31134177 31134470 -54561284 - AluSq SINE Alu -20 293 1 288 296 69 28 chr15 31134834 31134960 -54560794 + MIR3 SINE MIR 63 198 -10 632 296 76 6 chr15 31135195 31135422 -54560332 - MIR SINE MIR -6 256 20 707 260 17 6 chr15 31137140 31137313 -54558441 - MIR SINE MIR -86 176 2 340 354 113 50 chr15 31139104 31139926 -54555828 - L2 LINE L2 -410 2904 2031 324 276 112 60 chr15 31141399 31141533 -54554221 - MIR SINE MIR -120 142 2 307 310 186 0 chr15 31141701 31141814 -54553940 + L3 LINE CR1 1269 1402 -175 304 254 14 0 chr15 31141887 31141958 -54553796 - MIR SINE MIR -101 161 90 1172 106 6 0 chr15 31142157 31142336 -54553418 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2126 126 13 3 chr15 31142351 31142660 -54553094 - AluSx SINE Alu 0 312 1 398 338 44 38 chr15 31142770 31142930 -54552824 - L2 LINE L2 -2 3270 3110 421 301 175 0 chr15 31143379 31143585 -54552169 + MIR SINE MIR 13 254 -8 1686 187 17 0 chr15 31144806 31145095 -54550659 - AluJo SINE Alu -18 294 1 324 317 143 30 chr15 31145819 31146049 -54549705 + MIR SINE MIR 7 262 0 1671 191 10 7 chr15 31146449 31146737 -54549017 - AluJo SINE Alu -23 289 1 281 341 36 43 chr15 31148160 31148298 -54547456 - MIR3 SINE MIR -62 146 10 2395 241 52 69 chr15 31148580 31149720 -54546034 - MLT1B-int LTR MaLR -134 1237 1 1315 220 71 40 chr15 31149720 31150098 -54545656 - MLT1B LTR MaLR 0 390 1 431 310 0 0 chr15 31150338 31150451 -54545303 - MIR SINE MIR -85 177 65 440 219 133 0 chr15 31150465 31150570 -54545184 - L2 LINE L2 0 3313 3195 205 321 174 0 chr15 31150815 31150924 -54544830 - MIR SINE MIR -58 204 77 448 313 159 9 chr15 31152408 31152489 -54543265 - MIR SINE MIR -16 246 178 7098 42 16 5 chr15 31152489 31153426 -54542328 - L1PA7 LINE L1 0 6154 5212 448 313 159 9 chr15 31153426 31153558 -54542196 - MIR SINE MIR -84 178 1 268 186 42 24 chr15 31153878 31154045 -54541709 + (TA)n Simple_repeat Simple_repeat 1 170 0 395 165 5 77 chr15 31154071 31154265 -54541489 + (TA)n Simple_repeat Simple_repeat 1 180 0 216 239 0 60 chr15 31154276 31154410 -54541344 + (TA)n Simple_repeat Simple_repeat 1 126 0 2380 72 0 25 chr15 31154608 31154927 -54540827 - AluY SINE Alu 0 311 1 659 265 136 20 chr15 31155517 31155811 -54539943 + MLT1J LTR MaLR 9 336 -175 909 251 66 57 chr15 31156074 31156597 -54539157 - LTR38 LTR ERV1 0 541 31 1185 223 45 6 chr15 31157345 31157682 -54538072 + L1MC3 LINE L1 7436 7785 0 21 36 0 0 chr15 31157682 31157710 -54538044 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 81 0 chr15 31158981 31159129 -54536625 - L2 LINE L2 -9 3263 3104 404 82 16 0 chr15 31160461 31160522 -54535232 + (CA)n Simple_repeat Simple_repeat 1 62 0 203 103 26 26 chr15 31160594 31160633 -54535121 + CT-rich Low_complexity Low_complexity 2 40 0 4415 154 21 59 chr15 31161840 31162861 -54532893 + L1MC3 LINE L1 6816 7774 -11 2422 93 0 3 chr15 31162864 31163174 -54532580 + AluSg SINE Alu 2 310 0 263 217 0 67 chr15 31164354 31164414 -54531340 + L3 LINE CR1 1500 1555 -22 2440 183 8 92 chr15 31164478 31164513 -54531241 - MLT2B3 LTR ERVL -6 548 512 195 100 0 0 chr15 31164513 31164543 -54531211 + (TA)n Simple_repeat Simple_repeat 1 30 0 2440 183 8 92 chr15 31164543 31165103 -54530651 - MLT2B3 LTR ERVL -42 512 3 5121 110 30 7 chr15 31165959 31166798 -54528956 - L1MA3 LINE L1 0 6305 5448 418 61 30 0 chr15 31166987 31167053 -54528701 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 732 304 62 4 chr15 31167809 31168036 -54527718 - MIR SINE MIR -19 243 4 1613 249 73 9 chr15 31168254 31168804 -54526950 - HsTC2 DNA Tc2 -3 1895 1311 1400 193 141 19 chr15 31168809 31169134 -54526620 + MLT2B1 LTR ERVL 114 489 -31 207 69 0 0 chr15 31169134 31169163 -54526591 + (CA)n Simple_repeat Simple_repeat 1 29 0 1400 193 141 19 chr15 31169163 31169199 -54526555 + MLT2B1 LTR ERVL 489 519 -1 743 238 43 22 chr15 31169253 31169438 -54526316 - MER5A DNA MER1_type 0 189 1 295 280 104 8 chr15 31169438 31169563 -54526191 - HsTC2 DNA Tc2 -1760 138 2 26 0 0 0 chr15 31169614 31169640 -54526114 + AT_rich Low_complexity Low_complexity 1 26 0 5430 16 0 0 chr15 31169640 31170254 -54525500 - L1PA3 LINE L1 0 6155 5542 327 77 31 15 chr15 31170400 31170465 -54525289 + (TA)n Simple_repeat Simple_repeat 2 67 0 220 262 167 0 chr15 31170535 31170619 -54525135 - L3 LINE CR1 -123 1454 1357 333 345 104 12 chr15 31171276 31171525 -54524229 + L2 LINE L2 201 472 -2842 1870 154 30 25 chr15 31171602 31171965 -54523789 - MLT1A1 LTR MaLR 0 365 1 314 358 14 39 chr15 31171994 31172201 -54523553 + L2 LINE L2 2467 2668 -646 181 293 102 18 chr15 31172406 31172544 -54523210 - MIR3 SINE MIR -6 202 50 490 265 136 12 chr15 31174522 31174684 -54521070 + MIR3 SINE MIR 23 204 -4 21 89 0 0 chr15 31175817 31175873 -54519881 + AT_rich Low_complexity Low_complexity 1 56 0 602 196 52 152 chr15 31175876 31176284 -54519470 + L1MC4a LINE L1 5402 5768 -394 * 807 158 87 11 chr15 31176279 31176350 -54519404 + L1MA9 LINE L1 6115 6179 -133 390 57 0 0 chr15 31176350 31176403 -54519351 + (TA)n Simple_repeat Simple_repeat 1 53 0 807 158 87 11 chr15 31176403 31176514 -54519240 + L1MA9 LINE L1 6179 6311 -1 731 314 20 0 chr15 31176591 31176846 -54518908 + L1ME3 LINE L1 5522 5781 -2027 1228 244 43 11 chr15 31176874 31177223 -54518531 + L1ME3 LINE L1 5775 6134 -28 234 344 76 66 chr15 31177603 31177905 -54517849 - L2 LINE L2 -2 3270 2966 318 26 0 0 chr15 31179285 31179324 -54516430 + (CA)n Simple_repeat Simple_repeat 2 40 0 1384 263 50 28 chr15 31179358 31180120 -54515634 - HERVL LTR ERVL -3591 2063 1275 369 261 39 15 chr15 31180127 31180257 -54515497 + L1M4 LINE L1 3043 3175 -2971 320 221 26 0 chr15 31180437 31180514 -54515240 - Tigger5 DNA MER2_type -2244 79 1 265 277 69 19 chr15 31180514 31180673 -54515081 + L1MC4a LINE L1 5834 6000 -1808 342 361 34 24 chr15 31180884 31181092 -54514662 + L1MC4a LINE L1 6429 6638 -1170 * 364 340 62 41 chr15 31181082 31181276 -54514478 + L1ME LINE L1 146 343 -5862 312 310 124 16 chr15 31181667 31181909 -54513845 + L1ME LINE L1 793 1060 -5336 644 285 72 29 chr15 31181940 31182526 -54513228 + L1ME LINE L1 1072 1682 -4714 263 328 0 8 chr15 31182605 31182724 -54513030 + L1ME LINE L1 1703 1820 -4576 21 36 0 0 chr15 31182848 31182876 -54512878 + AT_rich Low_complexity Low_complexity 1 28 0 971 294 125 13 chr15 31182893 31183655 -54512099 - L1M4 LINE L1 -1712 4434 3588 300 355 100 17 chr15 31183923 31184154 -54511600 - L1MEd LINE L1 -5700 419 170 312 210 0 58 chr15 31184323 31184401 -54511353 + MIR SINE MIR 88 102 -106 1745 151 51 43 chr15 31184401 31184773 -54510981 + THE1C LTR MaLR 1 375 0 312 210 0 58 chr15 31184773 31184813 -54510941 + MIR SINE MIR 102 143 -65 325 255 21 53 chr15 31185227 31185321 -54510433 - MIR SINE MIR -70 192 102 201 277 205 0 chr15 31187135 31187218 -54508536 - MER5B DNA MER1_type -78 100 1 719 247 71 6 chr15 31187238 31187408 -54508346 - MER5A DNA MER1_type 0 189 9 275 259 214 27 chr15 31187420 31187532 -54508222 + L2 LINE L2 3127 3259 -13 2216 95 0 7 chr15 31187675 31187992 -54507762 + AluSp SINE Alu 1 315 0 381 226 70 0 chr15 31189927 31190042 -54505712 + MIR SINE MIR 134 256 -6 701 340 21 4 chr15 31191019 31191260 -54504494 + MIR SINE MIR 10 254 -8 506 216 61 78 chr15 31191546 31191777 -54503977 - MER102b DNA MER1_type -11 330 104 966 219 17 9 chr15 31191814 31192047 -54503707 + MER96B DNA MER1_type? 1 235 -182 465 228 228 30 chr15 31192532 31192699 -54503055 + MIR SINE MIR 2 201 -61 7838 20 1 1 chr15 31192882 31194566 -54501188 - L1PA3 LINE L1 0 6155 4459 207 200 0 0 chr15 31194685 31194730 -54501024 + A-rich Low_complexity Low_complexity 1 45 0 316 197 98 66 chr15 31194930 31195052 -54500702 + MIR SINE MIR 14 140 -68 2234 180 34 10 chr15 31195635 31196051 -54499703 - MSTB LTR MaLR 0 426 1 281 265 0 41 chr15 31196468 31196566 -54499188 + CT-rich Low_complexity Low_complexity 2 95 0 274 284 14 0 chr15 31196579 31196653 -54499101 - L2 LINE L2 -5 3308 3234 560 274 122 39 chr15 31197059 31197314 -54498440 - L2 LINE L2 -13 3300 3025 234 280 27 13 chr15 31197332 31197407 -54498347 - MER5B DNA MER1_type -83 95 20 1115 214 5 0 chr15 31197849 31198059 -54497695 - MER58A DNA MER1_type -10 214 4 379 293 20 0 chr15 31198352 31198451 -54497303 + MIR3 SINE MIR 104 204 -4 252 140 20 20 chr15 31200019 31200069 -54495685 - L1MB3 LINE L1 -28 6155 6106 597 270 10 29 chr15 31200197 31200401 -54495353 - MIR SINE MIR -4 258 59 361 315 121 6 chr15 31200745 31200910 -54494844 + MIR SINE MIR 4 187 -75 230 315 54 0 chr15 31200952 31201044 -54494710 - L2 LINE L2 -2 3270 3174 562 271 47 12 chr15 31205244 31205422 -54490332 + MIR SINE MIR 37 218 -44 511 289 24 62 chr15 31206930 31207141 -54488613 + L2 LINE L2 3111 3313 0 884 329 58 22 chr15 31207335 31207883 -54487871 - L1MC4a LINE L1 -1927 5881 5314 22 56 0 0 chr15 31209345 31209381 -54486373 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr15 31209707 31209735 -54486019 + AT_rich Low_complexity Low_complexity 1 28 0 228 283 211 33 chr15 31210415 31210567 -54485187 + MIR SINE MIR 20 198 -64 1642 210 34 41 chr15 31211583 31211676 -54484078 + LTR52 LTR ERVL 1 93 -328 2380 123 53 14 chr15 31211676 31212035 -54483719 - THE1C LTR MaLR 0 375 3 1642 210 34 41 chr15 31212035 31212355 -54483399 + LTR52 LTR ERVL 93 411 -10 882 245 69 0 chr15 31212469 31212673 -54483081 - MER58A DNA MER1_type -6 218 1 910 280 81 37 chr15 31214341 31214791 -54480963 - MLT1J2 LTR MaLR 0 450 10 1832 163 0 7 chr15 31215239 31215546 -54480208 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr15 31215717 31215738 -54480016 + AT_rich Low_complexity Low_complexity 1 21 0 436 218 0 0 chr15 31216063 31216141 -54479613 + MER21B LTR ERV1 12 89 -774 709 234 26 13 chr15 31216196 31216350 -54479404 + MER21B LTR ERV1 98 253 -610 1132 207 25 54 chr15 31216355 31216635 -54479119 + MER21B LTR ERV1 479 750 -113 611 286 50 54 chr15 31217093 31217334 -54478420 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 31217826 31217847 -54477907 + AT_rich Low_complexity Low_complexity 1 21 0 294 256 165 16 chr15 31217869 31217990 -54477764 - MIR SINE MIR -50 212 74 331 182 190 66 chr15 31218371 31218492 -54477262 + MIR SINE MIR 124 259 -3 328 314 86 0 chr15 31218691 31218831 -54476923 + ERVL-F LTR ERVL 1624 1775 -3989 288 323 31 0 chr15 31218806 31218936 -54476818 + ERVL-F LTR ERVL 1704 1837 -3159 * 1474 254 80 41 chr15 31218951 31219515 -54476239 + ERVL-F LTR ERVL 5156 5741 -23 1488 270 153 3 chr15 31219528 31220105 -54475649 + MLT2F LTR ERVL 1 663 0 238 338 115 14 chr15 31220395 31220534 -54475220 - MIR3 SINE MIR -48 160 8 206 250 0 0 chr15 31222821 31222865 -54472889 + (CAT)n Simple_repeat Simple_repeat 3 46 0 392 267 75 41 chr15 31223516 31223662 -54472092 + MER69A DNA AcHobo 26 176 -1 317 233 57 0 chr15 31223673 31223782 -54471972 - MIR SINE MIR -71 191 73 279 374 98 5 chr15 31224819 31225033 -54470721 + L2 LINE L2 2819 3052 -261 496 254 56 35 chr15 31225634 31225776 -54469978 + L2 LINE L2 3128 3272 0 418 301 49 14 chr15 31225895 31226038 -54469716 - MIR SINE MIR -107 155 8 335 335 37 19 chr15 31226085 31226246 -54469508 - MIR SINE MIR 0 262 99 346 183 14 14 chr15 31226765 31226836 -54468918 - MLT1C LTR MaLR 0 505 435 181 111 0 28 chr15 31226897 31226933 -54468821 - L2 LINE L2 0 3313 3279 1004 225 119 85 chr15 31226943 31227214 -54468540 - MLT1C LTR MaLR -76 391 131 2010 102 27 24 chr15 31227214 31227537 -54468217 - AluSg1 SINE Alu 0 309 2 1008 61 27 0 chr15 31227537 31227685 -54468069 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 2019 112 0 21 chr15 31227686 31227973 -54467781 - AluSq SINE Alu -32 281 1 2569 55 3 3 chr15 31227982 31228291 -54467463 - AluY SINE Alu -2 309 1 1004 225 119 85 chr15 31228291 31228384 -54467370 - MLT1C LTR MaLR -343 124 1 2233 165 11 22 chr15 31228473 31228842 -54466912 + MLT1A1 LTR MaLR 1 365 0 266 312 138 7 chr15 31228889 31229027 -54466727 - L2 LINE L2 -13 3259 3104 228 339 80 27 chr15 31229101 31229213 -54466541 - MIR3 SINE MIR -52 156 39 365 244 98 0 chr15 31230211 31230334 -54465420 - MER103 DNA DNA -24 142 8 550 345 25 8 chr15 31230601 31230836 -54464918 - MIR SINE MIR -17 245 7 23 0 0 0 chr15 31230993 31231016 -54464738 + AT_rich Low_complexity Low_complexity 1 23 0 1654 115 33 29 chr15 31231030 31231272 -54464482 - THE1C LTR MaLR 0 375 151 2409 128 16 25 chr15 31231272 31231639 -54464115 - THE1B LTR MaLR 0 364 1 1654 115 33 29 chr15 31231639 31231673 -54464081 - THE1C LTR MaLR -224 151 119 219 333 0 14 chr15 31231805 31231877 -54463877 + L2 LINE L2 3203 3273 -40 23 54 0 0 chr15 31232227 31232264 -54463490 + AT_rich Low_complexity Low_complexity 1 37 0 207 302 32 0 chr15 31232862 31232925 -54462829 + L2 LINE L2 2267 2331 -983 1590 274 81 35 chr15 31233609 31234266 -54461488 + L2 LINE L2 2127 2813 -501 2219 121 38 0 chr15 31234279 31234594 -54461160 + MER1B DNA MER1_type 1 327 -12 2159 174 29 3 chr15 31234594 31234978 -54460776 + L1MC2 LINE L1 5940 6333 -11 345 294 52 43 chr15 31234992 31235229 -54460525 + L2 LINE L2 2782 3035 -278 311 364 7 58 chr15 31235494 31235648 -54460106 + L2 LINE L2 3127 3272 0 246 62 0 0 chr15 31237263 31237295 -54458459 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 237 108 0 0 chr15 31237297 31237334 -54458420 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 293 8 73 chr15 31238645 31238768 -54456986 + MIR3 SINE MIR 55 169 -39 782 259 74 4 chr15 31238902 31239145 -54456609 + L1ME3A LINE L1 5807 6066 -104 2677 111 58 23 chr15 31239152 31239585 -54456169 - LTR7 LTR ERV1 -2 448 1 2496 107 45 35 chr15 31239585 31240179 -54455575 - HERVH LTR ERV1 0 7713 5600 4401 142 3 1 chr15 31240180 31240841 -54454913 - HERVH LTR ERV1 -2564 5149 4488 3344 120 6 2 chr15 31240843 31241343 -54454411 - HERVH LTR ERV1 -3720 3993 3492 897 143 20 0 chr15 31241333 31241480 -54454274 - HERVH LTR ERV1 -4423 3290 3141 * 15528 100 48 48 chr15 31241475 31244408 -54451346 - HERVH LTR ERV1 -4726 2987 1 2753 107 58 21 chr15 31244410 31244842 -54450912 - LTR7 LTR ERV1 -2 448 1 306 203 14 27 chr15 31244859 31244933 -54450821 + L1ME3A LINE L1 6084 6156 -14 750 250 44 32 chr15 31244993 31245245 -54450509 - MIR SINE MIR -3 259 5 2224 110 0 16 chr15 31247939 31248249 -54447505 + AluSg SINE Alu 1 305 -5 1076 258 203 32 chr15 31248990 31249505 -54446249 - MLT1G1 LTR MaLR 0 555 1 287 323 76 40 chr15 31249510 31249708 -54446046 - MLT1G1-int LTR MaLR -5 1366 1162 1292 258 118 47 chr15 31249713 31250179 -54445575 - MLT1G1 LTR MaLR -94 501 3 749 244 12 12 chr15 31250179 31250347 -54445407 + L3 LINE CR1 1409 1576 -1 6277 95 13 0 chr15 31251876 31253007 -54442747 - L1PA8 LINE L1 -2 6170 5024 556 308 72 28 chr15 31253129 31253379 -54442375 - MIR SINE MIR 0 262 2 290 299 64 37 chr15 31254757 31254944 -54440810 + L2 LINE L2 2076 2267 -1047 2012 196 58 23 chr15 31255608 31256092 -54439662 + MLT1D LTR MaLR 1 501 -4 538 366 100 30 chr15 31256138 31256800 -54438954 + L2 LINE L2 156 863 -2451 498 313 109 47 chr15 31256882 31257349 -54438405 + L2 LINE L2 2378 2873 -441 1343 217 16 13 chr15 31258636 31258954 -54436800 - MER58B DNA MER1_type -22 319 1 259 191 183 38 chr15 31261410 31261541 -54434213 + L1ME4a LINE L1 5685 5834 -287 237 276 46 0 chr15 31261633 31261720 -54434034 + L1ME4a LINE L1 5965 6055 -66 260 324 20 0 chr15 31263130 31263232 -54432522 - MER117 DNA MER1_type -56 141 38 553 318 33 21 chr15 31264686 31264928 -54430826 - MIR SINE MIR 0 262 18 333 285 15 0 chr15 31265378 31265515 -54430239 - MER117 DNA MER1_type -55 142 4 317 240 0 135 chr15 31265521 31265625 -54430129 + MIR SINE MIR 37 126 -82 321 292 67 28 chr15 31265777 31265930 -54429824 + MIR SINE MIR 30 188 -74 186 196 304 11 chr15 31266353 31266445 -54429309 - L2 LINE L2 -6 3266 3148 26 30 0 0 chr15 31266729 31266762 -54428992 + AT_rich Low_complexity Low_complexity 1 33 0 516 291 77 5 chr15 31266763 31266959 -54428795 - L1ME3A LINE L1 -58 6112 5903 200 206 0 0 chr15 31268651 31268685 -54427069 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 1456 178 49 104 chr15 31270434 31270961 -54424793 + LTR54B LTR ERV1 1 498 0 395 300 118 61 chr15 31271094 31271638 -54424116 - L2 LINE L2 -4 3309 2720 318 106 0 0 chr15 31271638 31271685 -54424069 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 395 300 118 61 chr15 31271685 31271797 -54423957 - L2 LINE L2 -593 2720 2616 230 254 66 77 chr15 31271953 31272134 -54423620 + MIR SINE MIR 84 262 0 222 37 0 0 chr15 31273298 31273325 -54422429 + (TC)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr15 31273327 31273367 -54422387 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr15 31273464 31273484 -54422270 + (A)n Simple_repeat Simple_repeat 1 20 0 249 296 111 12 chr15 31273673 31273754 -54422000 - L2 LINE L2 -34 3279 3191 525 283 19 13 chr15 31273783 31273942 -54421812 - MIR SINE MIR -52 210 51 1328 216 115 12 chr15 31274047 31274385 -54421369 - MLT1A2 LTR MaLR -1 373 1 265 305 74 0 chr15 31275561 31275656 -54420098 - MIR SINE MIR -57 205 104 230 315 41 14 chr15 31275691 31275764 -54419990 + L2 LINE L2 3176 3250 -22 236 275 22 22 chr15 31276430 31276521 -54419233 + MIR3 SINE MIR 106 196 -12 264 308 75 19 chr15 31278184 31278291 -54417463 - L2 LINE L2 -24 3289 3177 746 279 70 45 chr15 31278471 31279029 -54416725 - MER115 DNA AcHobo -26 667 3 3739 283 94 19 chr15 31279052 31280382 -54415372 + L2 LINE L2 368 1825 -1489 2346 35 74 0 chr15 31280382 31280665 -54415089 - AluY SINE Alu -7 304 1 3739 283 94 19 chr15 31280665 31280828 -54414926 + L2 LINE L2 1825 1974 -1340 212 184 0 20 chr15 31280996 31281045 -54414709 + CT-rich Low_complexity Low_complexity 1 48 0 215 31 31 0 chr15 31281410 31281442 -54414312 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3841 7 0 0 chr15 31281442 31281872 -54413882 - L1PA2 LINE L1 -18 6137 5708 203 147 0 0 chr15 31283207 31283241 -54412513 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 288 278 38 53 chr15 31283287 31283420 -54412334 + MIR SINE MIR 85 215 -47 183 194 0 0 chr15 31284042 31284073 -54411681 - L3 LINE CR1 -1429 148 118 886 179 92 15 chr15 31284221 31284416 -54411338 - MER6B DNA MER2_type 0 210 1 1053 324 147 9 chr15 31285027 31285573 -54410181 + L3 LINE CR1 946 1566 -11 748 156 47 8 chr15 31285849 31285977 -54409777 + L1MC1 LINE L1 6193 6325 -8 794 319 95 4 chr15 31286079 31286540 -54409214 - LTR33 LTR ERVL -17 504 2 2188 105 0 0 chr15 31287778 31288054 -54407700 + AluSx SINE Alu 7 282 -30 211 315 62 69 chr15 31289333 31289463 -54406291 + L2 LINE L2 2726 2854 -460 238 381 144 0 chr15 31289549 31289667 -54406087 - L2 LINE L2 -1 3271 3137 873 339 53 18 chr15 31289792 31290227 -54405527 - L2 LINE L2 -303 3010 2565 506 277 65 82 chr15 31290256 31290548 -54405206 + L2 LINE L2 2986 3272 0 203 152 0 0 chr15 31291125 31291158 -54404596 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 695 194 0 23 chr15 31291167 31291296 -54404458 + Tigger3(Golem) DNA MER2_type 27 152 -2877 * 1241 145 77 5 chr15 31291291 31291512 -54404242 + Tigger3(Golem) DNA MER2_type 2802 3038 0 180 200 0 0 chr15 31291512 31291552 -54404202 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr15 31291567 31291595 -54404159 + (CA)n Simple_repeat Simple_repeat 2 29 0 480 226 35 0 chr15 31291801 31291916 -54403838 + MIR SINE MIR 98 216 -46 427 338 88 48 chr15 31291912 31292312 -54403442 - L2 LINE L2 -339 2975 2560 * 546 248 186 0 chr15 31292834 31292859 -54402895 - MIR SINE MIR -32 230 211 351 0 0 0 chr15 31292859 31292898 -54402856 + (CA)n Simple_repeat Simple_repeat 2 40 0 546 248 186 0 chr15 31292898 31293017 -54402737 - MIR SINE MIR -51 211 59 283 234 70 67 chr15 31295022 31295153 -54400601 + MIR SINE MIR 30 166 -42 455 200 240 17 chr15 31295659 31295834 -54399920 - LTR50 LTR ERVL -27 768 555 * 697 246 219 8 chr15 31295828 31296185 -54399569 - LTR50 LTR ERVL -353 442 11 2373 52 0 7 chr15 31296432 31296719 -54399035 + AluY SINE Alu 21 305 -6 2157 92 10 3 chr15 31296721 31297013 -54398741 + AluSx SINE Alu 1 294 -18 1183 78 0 18 chr15 31297030 31297175 -54398579 + MER107 DNA MER1_type 1 144 -53 182 36 0 36 chr15 31297175 31297203 -54398551 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1183 78 0 18 chr15 31297203 31297223 -54398531 + MER107 DNA MER1_type 144 163 -34 265 336 72 8 chr15 31297291 31297416 -54398338 - L2 LINE L2 -495 2819 2687 652 242 63 83 chr15 31297705 31298068 -54397686 - L1MC/D LINE L1 -2174 5634 5279 239 282 107 0 chr15 31298181 31298330 -54397424 - L1MC/D LINE L1 -1097 5049 4885 36 40 0 0 chr15 31298366 31298416 -54397338 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 31298688 31298709 -54397045 + AT_rich Low_complexity Low_complexity 1 21 0 249 190 35 0 chr15 31300362 31300420 -54395334 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 997 212 23 18 chr15 31300434 31300651 -54395103 - MER20 DNA MER1_type -1 218 1 275 323 251 10 chr15 31300725 31300920 -54394834 - MIR SINE MIR -17 245 4 182 326 0 0 chr15 31301127 31301173 -54394581 + L2 LINE L2 3223 3268 -4 333 260 114 16 chr15 31301790 31301913 -54393841 - MIR SINE MIR -97 165 31 2535 108 31 0 chr15 31301954 31302307 -54393447 + THE1B LTR MaLR 1 364 0 284 329 75 25 chr15 31303561 31303722 -54392032 - MIR SINE MIR -65 197 29 924 169 106 29 chr15 31303742 31303949 -54391805 - MER58A DNA MER1_type -1 223 1 306 288 93 60 chr15 31304139 31304354 -54391400 + MIR SINE MIR 20 241 -21 978 195 12 1 chr15 31304354 31304607 -54391147 - MLT1A1 LTR MaLR 0 365 75 1087 249 123 37 chr15 31304758 31305188 -54390566 + MLT1L LTR MaLR 142 608 -7 234 418 9 18 chr15 31305189 31305299 -54390455 + MIR3 SINE MIR 51 159 -49 1113 192 86 13 chr15 31305405 31305707 -54390047 + MER33 DNA MER1_type 1 324 0 236 326 0 0 chr15 31306354 31306403 -54389351 + MER58 DNA MER1_type 1 49 -292 * 320 215 0 0 chr15 31306399 31306464 -54389290 + MER58 DNA MER1_type 2356 2420 0 253 226 16 0 chr15 31306482 31306544 -54389210 + GA-rich Low_complexity Low_complexity 1 63 0 321 157 24 24 chr15 31306544 31306627 -54389127 + A-rich Low_complexity Low_complexity 5 87 0 207 0 0 0 chr15 31306911 31306934 -54388820 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7874 13 0 0 chr15 31306936 31308479 -54387275 - L1PA2 LINE L1 -2 6153 4611 7265 31 0 0 chr15 31308479 31309341 -54386413 + L1P LINE L1 3584 4445 -1701 801 119 19 127 chr15 31309469 31309838 -54385916 + L1P LINE L1 4289 4617 -1529 319 286 52 26 chr15 31309908 31310062 -54385692 - L1M4 LINE L1 -3153 2993 2836 29 28 0 0 chr15 31310192 31310228 -54385526 + AT_rich Low_complexity Low_complexity 1 36 0 1211 170 18 31 chr15 31310622 31310846 -54384908 + AluJb SINE Alu 88 308 -4 429 286 75 57 chr15 31310988 31311320 -54384434 - L1 LINE L1 -1542 4604 4267 2567 115 0 3 chr15 31311507 31311872 -54383882 - THE1B LTR MaLR 0 364 1 896 138 33 7 chr15 31312177 31312329 -54383425 - MLT2C2 LTR ERVL -213 251 96 2473 94 5 27 chr15 31312339 31312712 -54383042 - L1PB1 LINE L1 -7 6144 5780 457 167 16 0 chr15 31312715 31312841 -54382913 + (TA)n Simple_repeat Simple_repeat 2 129 0 6189 179 11 6 chr15 31312842 31314669 -54381085 - L1PB1 LINE L1 -353 5798 3970 673 132 9 0 chr15 31314669 31314775 -54380979 - MLT2C2 LTR ERVL -357 107 1 3310 58 2 0 chr15 31315357 31315812 -54379942 + L1PA8 LINE L1 5737 6192 0 365 276 0 16 chr15 31316130 31316253 -54379501 - MER94 DNA DNA -9 125 5 1002 136 36 54 chr15 31317271 31317492 -54378262 + MER20 DNA MER1_type 1 217 -2 619 302 67 11 chr15 31318344 31318577 -54377177 + MIR SINE MIR 21 260 -2 1776 127 0 4 chr15 31319339 31319583 -54376171 - AluSq SINE Alu -70 243 1 1565 267 174 33 chr15 31319596 31320602 -54375152 - HAL1 LINE L1 -240 2267 1120 861 125 132 0 chr15 31320603 31320739 -54375015 - AluSg/x SINE Alu -22 288 135 279 241 0 0 chr15 31320796 31320850 -54374904 + L2 LINE L2 3223 3276 -37 225 0 0 0 chr15 31320858 31320883 -54374871 + (A)n Simple_repeat Simple_repeat 1 25 0 2461 156 16 5 chr15 31320938 31320978 -54374776 - L1MB3 LINE L1 -131 6052 6013 1357 234 112 30 chr15 31320978 31321584 -54374170 - L1MD2 LINE L1 -355 6004 5338 962 304 177 10 chr15 31321608 31322099 -54373655 - HAL1 LINE L1 -1886 621 49 1911 131 32 0 chr15 31322549 31322919 -54372835 - AluSx SINE Alu 0 379 1 264 256 25 76 chr15 31323452 31323588 -54372166 - MIR SINE MIR -63 145 24 368 136 117 0 chr15 31326192 31326295 -54369459 + MER96B DNA MER1_type? 65 179 -238 22 56 0 0 chr15 31327104 31327140 -54368614 + AT_rich Low_complexity Low_complexity 1 36 0 257 203 0 0 chr15 31327717 31327781 -54367973 + L1MC4 LINE L1 6640 6703 -1339 189 0 0 0 chr15 31327791 31327812 -54367942 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr15 31327863 31327889 -54367865 + AT_rich Low_complexity Low_complexity 1 26 0 300 342 56 12 chr15 31328540 31328701 -54367053 + MARNA DNA Mariner 16 183 -403 207 220 0 0 chr15 31330676 31330726 -54365028 + GA-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr15 31334775 31334803 -54360951 + AT_rich Low_complexity Low_complexity 1 28 0 242 29 29 0 chr15 31336249 31336284 -54359470 + (GA)n Simple_repeat Simple_repeat 2 37 0 183 246 0 66 chr15 31338383 31338444 -54357310 - L2 LINE L2 0 3313 3257 211 365 43 9 chr15 31339007 31339122 -54356632 - L2 LINE L2 -10 3303 3185 183 183 0 100 chr15 31340755 31340815 -54354939 + L3 LINE CR1 898 951 -626 180 0 0 0 chr15 31342066 31342086 -54353668 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr15 31342093 31342121 -54353633 + AT_rich Low_complexity Low_complexity 1 28 0 404 234 73 36 chr15 31342209 31342346 -54353408 + MIR3 SINE MIR 51 192 -16 4974 150 28 3 chr15 31344975 31345844 -54349910 + L1MA4 LINE L1 5402 6291 -9 213 392 42 39 chr15 31346561 31346821 -54348933 + L2 LINE L2 2823 3083 -189 637 265 39 29 chr15 31350164 31350368 -54345386 + MIR SINE MIR 57 262 0 22 0 0 0 chr15 31350780 31350802 -54344952 + AT_rich Low_complexity Low_complexity 1 22 0 316 322 60 38 chr15 31351649 31351832 -54343922 + L1M2 LINE L1 2325 2511 -4338 498 344 122 33 chr15 31352474 31353302 -54342452 + L1M2 LINE L1 2843 3744 -3104 42070 35 21 5 chr15 31353308 31359357 -54336397 + L1PA2 LINE L1 4 6155 0 469 305 29 42 chr15 31359357 31359596 -54336158 + L1M2 LINE L1 3879 4114 -2734 381 293 44 40 chr15 31359638 31359887 -54335867 + L1M2 LINE L1 4605 4854 -1994 1605 86 10 0 chr15 31359901 31360110 -54335644 - AluSp SINE Alu -102 211 1 288 323 116 26 chr15 31360126 31360281 -54335473 - L2 LINE L2 -2 3270 3102 209 33 33 0 chr15 31360613 31360643 -54335111 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 286 304 40 54 chr15 31361782 31361930 -54333824 - L2 LINE L2 0 3313 3168 260 345 42 14 chr15 31362101 31362243 -54333511 - MIR SINE MIR -55 207 62 235 276 103 35 chr15 31362739 31362826 -54332928 - L2 LINE L2 -11 3261 3169 1099 205 42 5 chr15 31362857 31363072 -54332682 - MER58A DNA MER1_type 0 224 2 638 298 69 67 chr15 31363439 31364071 -54331683 - L2 LINE L2 -2 3311 2679 264 77 0 0 chr15 31364529 31364568 -54331186 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 86 0 0 chr15 31364808 31364843 -54330911 + (TG)n Simple_repeat Simple_repeat 2 36 0 937 241 51 5 chr15 31367531 31367726 -54328028 + MER63A DNA MER1_type 7 210 0 233 360 65 20 chr15 31367733 31367886 -54327868 - MIR SINE MIR -102 160 1 213 174 22 22 chr15 31369505 31369551 -54326203 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 347 341 12 17 chr15 31370049 31370222 -54325532 + MER117 DNA MER1_type 6 177 -20 182 296 136 34 chr15 31370278 31370366 -54325388 + MIR3 SINE MIR 86 182 -26 25 65 0 0 chr15 31373973 31374019 -54321735 + AT_rich Low_complexity Low_complexity 1 46 0 309 268 304 0 chr15 31374199 31374311 -54321443 + MER5A DNA MER1_type 44 189 0 683 258 0 22 chr15 31374319 31374501 -54321253 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr15 31375295 31375318 -54320436 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr15 31375435 31375463 -54320291 + AT_rich Low_complexity Low_complexity 1 29 -19 910 44 0 0 chr15 31375463 31375577 -54320177 - L1PA14 LINE L1 -3 6158 6045 24 41 0 20 chr15 31375577 31375597 -54320157 + AT_rich Low_complexity Low_complexity 29 48 0 23 54 0 0 chr15 31376322 31376359 -54319395 + AT_rich Low_complexity Low_complexity 1 37 0 195 424 0 17 chr15 31376557 31376675 -54319079 + MIR SINE MIR 21 136 -72 269 347 100 13 chr15 31376847 31376997 -54318757 - MER5A DNA MER1_type -11 178 16 817 323 81 0 chr15 31377530 31377902 -54317852 - L1MC4a LINE L1 -1896 5912 5511 529 245 80 80 chr15 31378079 31378316 -54317438 - MIR SINE MIR -14 248 12 185 359 28 69 chr15 31378300 31378517 -54317237 - L2 LINE L2 -721 2593 2386 * 22 88 0 0 chr15 31379819 31379876 -54315878 + AT_rich Low_complexity Low_complexity 1 57 0 206 121 0 0 chr15 31380063 31380096 -54315658 + (T)n Simple_repeat Simple_repeat 1 33 0 21 89 0 0 chr15 31380140 31380196 -54315558 + AT_rich Low_complexity Low_complexity 1 56 0 398 314 108 36 chr15 31380407 31380713 -54315041 - L3 LINE CR1 -108 1469 1142 1317 118 4 13 chr15 31381693 31381921 -54313833 - L1MA8 LINE L1 0 6291 6066 3759 127 26 17 chr15 31381930 31382845 -54312909 + L1PA12 LINE L1 5275 6145 -21 4458 144 17 17 chr15 31382857 31383968 -54311786 - L1MA8 LINE L1 -219 6072 4963 416 229 25 0 chr15 31384042 31384160 -54311594 + L1M4 LINE L1 5042 5162 -984 2255 105 0 0 chr15 31385471 31385766 -54309988 - AluSx SINE Alu -17 295 1 273 248 0 74 chr15 31385776 31385897 -54309857 - HsTC2 DNA Tc2 -1141 757 646 266 233 0 0 chr15 31386042 31386102 -54309652 - HsTC2 DNA Tc2 -1619 279 220 386 297 25 0 chr15 31386271 31386389 -54309365 - L2 LINE L2 0 3313 3193 251 236 0 0 chr15 31386389 31386444 -54309310 - HsTC2 DNA Tc2 -1821 77 23 21 0 0 0 chr15 31387168 31387189 -54308565 + AT_rich Low_complexity Low_complexity 1 21 0 320 0 25 0 chr15 31387635 31387675 -54308079 + (CA)n Simple_repeat Simple_repeat 2 42 0 250 235 29 0 chr15 31387681 31387749 -54308005 + (TA)n Simple_repeat Simple_repeat 2 71 0 334 189 111 22 chr15 31388251 31388341 -54307413 + MIR SINE MIR 119 216 -46 398 300 58 58 chr15 31389304 31389544 -54306210 - MER102a DNA MER1_type -10 320 81 588 349 34 13 chr15 31390733 31390968 -54304786 - L2 LINE L2 0 3272 3033 278 268 56 0 chr15 31391057 31391128 -54304626 + L2 LINE L2 3198 3272 0 285 379 19 28 chr15 31391136 31391347 -54304407 - L2 LINE L2 -358 2956 2748 243 0 0 0 chr15 31391372 31391399 -54304355 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 200 328 94 0 chr15 31391840 31391904 -54303850 - L2 LINE L2 -565 2749 2680 445 314 54 32 chr15 31392206 31392391 -54303363 + MIR3 SINE MIR 18 206 -2 27 49 0 0 chr15 31394535 31394576 -54301178 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr15 31395626 31395654 -54300100 + AT_rich Low_complexity Low_complexity 1 28 0 186 301 11 65 chr15 31395754 31395847 -54299907 + MIR SINE MIR 57 144 -118 26 50 0 0 chr15 31397130 31397170 -54298584 + AT_rich Low_complexity Low_complexity 1 40 0 793 210 60 86 chr15 31397642 31397751 -54298003 + LTR48B LTR ERV1 385 495 -149 1963 108 44 80 chr15 31397751 31398138 -54297616 - THE1C LTR MaLR 0 375 3 793 210 60 86 chr15 31398138 31398295 -54297459 + LTR48B LTR ERV1 495 644 0 1053 287 36 25 chr15 31399608 31399967 -54295787 + MER20B DNA MER1_type 6 368 -415 390 189 61 1 chr15 31400094 31400268 -54295486 + MER20B DNA MER1_type 537 743 -40 335 363 96 6 chr15 31400846 31401003 -54294751 - L2 LINE L2 0 3272 3102 194 269 0 58 chr15 31401064 31401116 -54294638 + L2 LINE L2 3209 3257 -15 302 360 7 39 chr15 31401580 31401733 -54294021 - L2 LINE L2 -159 3113 2966 779 293 11 5 chr15 31401985 31402176 -54293578 - MIR SINE MIR -69 193 2 226 255 21 96 chr15 31402206 31402300 -54293454 - L2 LINE L2 0 3272 3186 206 323 101 10 chr15 31403262 31403361 -54292393 + L2 LINE L2 3203 3310 -3 310 221 26 26 chr15 31404647 31404760 -54290994 - Charlie7 DNA MER1_type -57 2555 2443 526 63 25 0 chr15 31404762 31404841 -54290913 + (CA)n Simple_repeat Simple_repeat 2 82 0 565 299 149 10 chr15 31404879 31405167 -54290587 - Charlie7 DNA MER1_type -2135 477 150 261 290 93 9 chr15 31405222 31405329 -54290425 + L2 LINE L2 2720 2835 -479 320 321 69 8 chr15 31406444 31406575 -54289179 + MIR SINE MIR 7 145 -117 1564 180 0 0 chr15 31406643 31406898 -54288856 + AluJb SINE Alu 48 302 -10 25 51 0 0 chr15 31406960 31406999 -54288755 + AT_rich Low_complexity Low_complexity 1 39 0 937 189 0 75 chr15 31407696 31407897 -54287857 + AluJb SINE Alu 84 269 -43 546 187 0 9 chr15 31408409 31408516 -54287238 - FLAM_A SINE Alu -16 126 21 353 210 0 0 chr15 31410006 31410068 -54285686 + Tigger5 DNA MER2_type 2256 2317 -6 326 241 13 13 chr15 31410069 31410148 -54285606 - Tigger5 DNA MER2_type -2243 80 2 256 135 0 0 chr15 31410633 31410670 -54285084 - tRNA-Gln-CAA tRNA tRNA -37 38 2 187 240 164 48 chr15 31410982 31411086 -54284668 - MIR3 SINE MIR -29 179 64 1226 155 0 0 chr15 31412041 31412228 -54283526 + AluSg/x SINE Alu 81 267 -45 22 56 0 0 chr15 31412918 31412954 -54282800 + AT_rich Low_complexity Low_complexity 1 36 0 19277 166 18 6 chr15 31414182 31415680 -54280074 + L1PA12 LINE L1 1690 3170 -2998 189 0 0 0 chr15 31415680 31415701 -54280053 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 19277 166 18 6 chr15 31415701 31418491 -54277263 + L1PA12 LINE L1 3170 6023 -145 2021 114 0 0 chr15 31419001 31419265 -54276489 + AluSx SINE Alu 4 267 -45 258 366 9 9 chr15 31419367 31419479 -54276275 - MIR SINE MIR -65 143 32 747 320 87 41 chr15 31419830 31420339 -54275415 - L2 LINE L2 0 3313 2778 6739 132 19 16 chr15 31420939 31422131 -54273623 + L1MA2 LINE L1 4746 5949 -355 1802 161 7 11 chr15 31422131 31422455 -54273299 + AluJb SINE Alu 1 323 0 6739 132 19 16 chr15 31422455 31422812 -54272942 + L1MA2 LINE L1 5949 6304 0 481 254 11 79 chr15 31423300 31423489 -54272265 - MER5B DNA MER1_type -1 177 2 225 0 0 0 chr15 31423502 31423527 -54272227 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 31424231 31424259 -54271495 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 31425156 31425176 -54270578 + (CAA)n Simple_repeat Simple_repeat 2 21 0 494 305 63 27 chr15 31425292 31425515 -54270239 + MIR SINE MIR 10 240 -22 331 297 21 76 chr15 31425670 31425815 -54269939 - MIR SINE MIR -115 147 11 1614 271 62 75 chr15 31425851 31426801 -54268953 - L2 LINE L2 0 3313 2371 405 303 52 32 chr15 31427062 31427217 -54268537 - MIR3 SINE MIR -6 202 45 444 207 0 0 chr15 31428409 31428496 -54267258 - MIR3 SINE MIR -45 163 77 297 118 0 0 chr15 31428743 31428794 -54266960 + (TATG)n Simple_repeat Simple_repeat 2 52 0 217 191 0 0 chr15 31428825 31428872 -54266882 + L2 LINE L2 3267 3313 0 404 243 104 58 chr15 31430478 31430737 -54265017 + L2 LINE L2 3041 3311 -2 230 260 0 13 chr15 31430855 31430932 -54264822 + (TA)n Simple_repeat Simple_repeat 1 76 0 28 0 0 0 chr15 31431228 31431256 -54264498 + AT_rich Low_complexity Low_complexity 1 28 0 465 236 68 94 chr15 31431408 31431717 -54264037 + L1ME3A LINE L1 5851 6151 -19 264 232 0 0 chr15 31432119 31432188 -54263566 - L1M4 LINE L1 -2900 3246 3178 306 332 107 21 chr15 31432225 31432412 -54263342 - HAL1 LINE L1 -924 1583 1381 655 317 116 49 chr15 31432560 31432928 -54262826 - L1MEd LINE L1 -5042 1077 735 267 31 0 0 chr15 31432928 31432960 -54262794 + (TG)n Simple_repeat Simple_repeat 1 32 0 655 317 116 49 chr15 31432960 31433505 -54262249 - L1MEd LINE L1 -5384 735 103 677 293 40 7 chr15 31433628 31433925 -54261829 + L1ME LINE L1 5485 5791 -330 28 0 0 0 chr15 31433983 31434011 -54261743 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 31434038 31434073 -54261681 + AT_rich Low_complexity Low_complexity 1 35 0 4833 135 34 23 chr15 31434141 31435459 -54260295 + L1PB1 LINE L1 4821 6147 -4 6022 99 8 9 chr15 31435470 31436440 -54259314 + L1PA10 LINE L1 5175 6143 -25 255 31 0 0 chr15 31436440 31436472 -54259282 + (CTAAA)n Simple_repeat Simple_repeat 4 35 0 4679 119 54 84 chr15 31436800 31437766 -54257988 - L1PA16 LINE L1 -4 6162 5224 5943 75 5 3 chr15 31439747 31440525 -54255229 - LTR17 LTR ERV1 0 780 1 206 307 102 11 chr15 31440740 31440828 -54254926 - MIR SINE MIR -131 131 36 31 0 0 0 chr15 31440868 31440899 -54254855 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr15 31441534 31441577 -54254177 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 31442476 31442506 -54253248 + AT_rich Low_complexity Low_complexity 1 30 0 369 58 0 0 chr15 31442849 31442901 -54252853 + (GA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr15 31443210 31443235 -54252519 + AT_rich Low_complexity Low_complexity 1 25 0 777 257 35 63 chr15 31443303 31443618 -54252136 + L1M4 LINE L1 101 406 -6136 308 169 0 0 chr15 31443613 31443672 -54252082 + L1M4 LINE L1 3333 3391 -3253 * 3703 244 15 14 chr15 31443674 31444710 -54251044 + L1M4 LINE L1 3781 4817 -1827 2254 134 69 27 chr15 31444711 31445115 -54250639 + MSTA LTR MaLR 1 421 -7 8864 181 17 10 chr15 31445118 31446758 -54248996 + MSTA-int LTR MaLR 1 1651 0 1950 160 70 13 chr15 31446758 31447146 -54248608 + MSTA LTR MaLR 1 410 -18 754 259 45 28 chr15 31447820 31448067 -54247687 + L1MDa LINE L1 62 312 -6228 1347 145 47 0 chr15 31448067 31448281 -54247473 + MER30 DNA MER1_type 1 224 -6 449 294 38 68 chr15 31448501 31448736 -54247018 + L1MDa LINE L1 306 533 -6007 1161 232 36 17 chr15 31449443 31449745 -54246009 + L1PA16 LINE L1 5858 6165 -1 855 131 0 0 chr15 31450285 31450415 -54245339 + L1PA16 LINE L1 6036 6165 -1 26 0 0 0 chr15 31450995 31451021 -54244733 + AT_rich Low_complexity Low_complexity 1 26 0 306 299 72 54 chr15 31451178 31451399 -54244355 - MIR SINE MIR -17 245 21 1245 206 112 9 chr15 31451413 31451753 -54244001 - L1MB8 LINE L1 0 6178 5804 186 43 0 0 chr15 31453132 31453155 -54242599 + (T)n Simple_repeat Simple_repeat 1 23 0 1878 106 23 0 chr15 31453276 31453532 -54242222 + AluSq SINE Alu 1 262 -51 256 337 31 41 chr15 31453782 31453880 -54241874 - L2 LINE L2 -27 3245 3149 674 130 165 0 chr15 31453905 31454020 -54241734 + AluJo SINE Alu 3 136 -176 281 209 0 22 chr15 31454033 31454124 -54241630 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 34 0 0 0 chr15 31454128 31454162 -54241592 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 31455277 31455298 -54240456 + AT_rich Low_complexity Low_complexity 1 21 0 474 305 120 78 chr15 31455338 31456528 -54239226 - L1 LINE L1 -773 5373 4134 277 289 19 0 chr15 31456872 31456976 -54238778 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 31457732 31457849 -54237905 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 31457855 31457882 -54237872 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 207 139 0 0 chr15 31458274 31458310 -54237444 + (TG)n Simple_repeat Simple_repeat 2 37 0 182 213 43 0 chr15 31458349 31458396 -54237358 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 31460440 31460573 -54235181 + MER94 DNA DNA 1 134 0 498 242 37 37 chr15 31462189 31462350 -54233404 + MLT1I LTR MaLR 241 401 -8 234 283 17 17 chr15 31462467 31462527 -54233227 - MIR SINE MIR -133 75 16 937 249 4 9 chr15 31463677 31463902 -54231852 + MER58A DNA MER1_type 1 224 0 4546 158 39 18 chr15 31464120 31464997 -54230757 + L1MB1 LINE L1 5273 6167 -1 184 327 0 0 chr15 31465174 31465226 -54230528 + L2 LINE L2 2987 3038 -234 197 0 0 67 chr15 31465339 31465369 -54230385 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 714 338 94 25 chr15 31465388 31466059 -54229695 + L2 LINE L2 2599 3312 -1 2037 117 4 4 chr15 31466197 31466505 -54229249 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 31466531 31466591 -54229163 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 31467770 31467909 -54227845 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 31468436 31468459 -54227295 + AT_rich Low_complexity Low_complexity 1 23 0 2259 119 0 0 chr15 31469503 31469815 -54225939 + AluSx SINE Alu 1 312 0 2153 102 28 0 chr15 31470262 31470545 -54225209 - AluSg SINE Alu -19 291 1 2343 103 0 0 chr15 31471537 31471848 -54223906 + AluY SINE Alu 1 311 0 31 68 0 0 chr15 31474567 31474626 -54221128 + AT_rich Low_complexity Low_complexity 1 59 0 32 86 0 0 chr15 31474743 31474824 -54220930 + AT_rich Low_complexity Low_complexity 1 81 0 746 246 37 21 chr15 31475542 31475733 -54220021 + MER58A DNA MER1_type 7 200 -24 1878 179 99 8 chr15 31475744 31476129 -54219625 - MSTB1 LTR MaLR -12 420 1 693 187 26 0 chr15 31476171 31476326 -54219428 - MER3 DNA MER1_type 0 2624 2466 383 244 0 0 chr15 31476321 31476399 -54219355 - MER3 DNA MER1_type -92 117 40 * 208 370 29 59 chr15 31476653 31476926 -54218828 - L3b LINE CR1 -205 1378 1114 1039 247 4 20 chr15 31477338 31477589 -54218165 + AluJo SINE Alu 4 250 -62 243 0 0 0 chr15 31477644 31477671 -54218083 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 233 0 0 chr15 31477820 31477863 -54217891 + L3 LINE CR1 995 1037 -540 243 317 97 9 chr15 31479205 31479432 -54216322 + L1ME LINE L1 5616 5862 -259 1910 152 0 7 chr15 31481622 31481919 -54213835 + AluJb SINE Alu 1 295 -17 225 268 24 114 chr15 31482487 31482610 -54213144 - L2 LINE L2 -1 3271 3160 1042 204 136 11 chr15 31483093 31483460 -54212294 + L1MC3 LINE L1 6986 7398 -387 * 1289 164 4 28 chr15 31483447 31483716 -54212038 + L1MC1 LINE L1 5672 5824 -332 418 324 0 0 chr15 31484589 31484762 -54210992 + T-rich Low_complexity Low_complexity 1 173 0 757 233 0 12 chr15 31484866 31485029 -54210725 + LTR41 LTR ERVL 1 161 -612 1712 158 4 11 chr15 31485063 31485342 -54210412 + AluJb SINE Alu 23 299 -13 722 129 41 0 chr15 31485345 31485492 -54210262 + GA-rich Low_complexity Low_complexity 4 156 0 950 262 82 77 chr15 31485587 31486015 -54209739 + LTR41 LTR ERVL 337 766 -7 33 66 0 0 chr15 31486563 31486624 -54209130 + AT_rich Low_complexity Low_complexity 1 61 0 1031 210 39 9 chr15 31486974 31487203 -54208551 + MIR SINE MIR 6 241 -21 378 245 170 13 chr15 31487706 31487865 -54207889 + L2 LINE L2 2990 3173 -140 312 240 25 0 chr15 31488311 31488432 -54207322 + GA-rich Low_complexity Low_complexity 2 125 0 193 276 13 40 chr15 31488653 31488729 -54207025 - L2 LINE L2 -1039 2275 2202 1632 160 40 14 chr15 31489270 31489571 -54206183 + AluJb SINE Alu 1 308 0 2289 91 0 3 chr15 31490125 31490422 -54205332 + AluSq SINE Alu 1 296 -17 2031 85 4 4 chr15 31491515 31491774 -54203980 + AluSc SINE Alu 36 294 -15 24 0 0 0 chr15 31492008 31492032 -54203722 + AT_rich Low_complexity Low_complexity 1 24 0 2041 212 85 30 chr15 31492717 31493246 -54202508 + MLT1E2 LTR MaLR 69 626 0 2317 78 7 0 chr15 31493340 31493633 -54202121 - AluY SINE Alu -16 295 1 2095 114 99 6 chr15 31493856 31494189 -54201565 + THE1B LTR MaLR 1 364 0 224 213 0 0 chr15 31494221 31494268 -54201486 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3084 158 6 9 chr15 31495209 31495739 -54200015 + L1MB3 LINE L1 5634 6161 -22 712 256 87 40 chr15 31496194 31496515 -54199239 - MER46C DNA MER2_type -1 337 2 1307 143 390 3 chr15 31498961 31499269 -54196485 - THE1C-int LTR MaLR -1150 430 4 1617 189 48 38 chr15 31499272 31499643 -54196111 - THE1C LTR MaLR 0 375 1 1283 171 27 0 chr15 31499643 31499900 -54195854 + L1MA4A LINE L1 6035 6298 -5 418 242 59 20 chr15 31500322 31500475 -54195279 - Charlie4 DNA MER1_type 0 1961 1803 42185 38 21 1 chr15 31500614 31506644 -54189110 + L1PA3 LINE L1 4 6155 0 3478 187 29 43 chr15 31506689 31507485 -54188269 - L1MB5 LINE L1 -3 6171 5387 1735 182 0 4 chr15 31507485 31507765 -54187989 - AluJb SINE Alu -33 279 1 620 264 25 0 chr15 31507780 31507977 -54187777 - L1MB5 LINE L1 -830 5316 5115 441 95 0 0 chr15 31508012 31508075 -54187679 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 209 362 78 21 chr15 31508094 31508235 -54187519 - MIR SINE MIR -51 211 63 518 321 0 0 chr15 31508329 31508463 -54187291 - L2 LINE L2 0 3313 3180 224 350 29 19 chr15 31508890 31508993 -54186761 - MIR SINE MIR -149 113 10 16013 48 0 7 chr15 31510643 31513137 -54182617 - L1PA3 LINE L1 -215 5940 3475 258 239 79 14 chr15 31514169 31514305 -54181449 + MIR3 SINE MIR 14 154 -63 1087 207 9 14 chr15 31514410 31514632 -54181122 + MER58A DNA MER1_type 1 221 -3 229 274 94 43 chr15 31516800 31516917 -54178837 + LTR33 LTR ERVL 37 159 -362 832 205 13 64 chr15 31517017 31517251 -54178503 + LTR33 LTR ERVL 296 517 -4 1503 50 0 6 chr15 31517351 31517532 -54178222 - AluY SINE Alu -19 292 113 537 259 135 10 chr15 31517970 31518163 -54177591 - MIR SINE MIR 0 262 46 313 272 88 32 chr15 31518269 31518394 -54177360 + MIR SINE MIR 61 192 -70 1402 185 29 22 chr15 31521061 31521337 -54174417 + AluJo SINE Alu 2 279 -33 303 28 0 0 chr15 31521359 31521395 -54174359 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr15 31522672 31522693 -54173061 + AT_rich Low_complexity Low_complexity 1 21 0 956 298 109 65 chr15 31522726 31523944 -54171810 - L1M4 LINE L1 -766 5380 4109 277 289 19 0 chr15 31524267 31524371 -54171383 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 31525127 31525244 -54170510 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 31525250 31525277 -54170477 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 182 213 43 0 chr15 31525730 31525777 -54169977 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 31527823 31527956 -54167798 + MER94 DNA DNA 1 134 0 496 242 37 37 chr15 31529572 31529733 -54166021 + MLT1I LTR MaLR 241 401 -8 207 279 16 33 chr15 31529850 31529911 -54165843 - MIR SINE MIR -133 75 16 1192 15 0 15 chr15 31530838 31530975 -54164779 + AluYa5 SINE Alu 1 135 -176 980 240 4 9 chr15 31531198 31531423 -54164331 + MER58A DNA MER1_type 1 224 0 4516 160 39 18 chr15 31531641 31532518 -54163236 + L1MB1 LINE L1 5273 6167 -1 197 0 0 67 chr15 31532861 31532891 -54162863 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr15 31532971 31532994 -54162760 + (T)n Simple_repeat Simple_repeat 1 23 0 713 333 101 19 chr15 31532994 31533588 -54162166 + L2 LINE L2 2671 3312 -1 2037 117 4 4 chr15 31533726 31534034 -54161720 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 31534060 31534120 -54161634 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 31535299 31535438 -54160316 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 31535965 31535988 -54159766 + AT_rich Low_complexity Low_complexity 1 23 0 2186 128 0 0 chr15 31537032 31537338 -54158416 + AluSx SINE Alu 1 306 -6 2133 109 28 0 chr15 31537786 31538071 -54157683 - AluSx SINE Alu -19 293 1 2212 51 44 4 chr15 31539472 31539746 -54156008 - AluY SINE Alu -15 296 12 227 229 36 60 chr15 31539805 31539888 -54155866 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 31539977 31540076 -54155678 + MIR SINE MIR 98 200 -62 332 310 0 20 chr15 31540220 31540320 -54155434 + L2 LINE L2 3182 3279 -34 224 204 140 65 chr15 31540794 31540887 -54154867 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 31540893 31541189 -54154565 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 31541189 31541236 -54154518 + L3 LINE CR1 1524 1570 -7 2532 50 3 0 chr15 31542856 31543156 -54152598 + AluY SINE Alu 1 301 -10 309 282 24 0 chr15 31543811 31543896 -54151858 + L2 LINE L2 3180 3266 -6 295 341 68 0 chr15 31544288 31544420 -54151334 + MIR SINE MIR 110 250 -12 625 117 51 44 chr15 31544678 31544815 -54150939 + MER53 DNA DNA 1 138 -51 301 143 86 0 chr15 31544809 31544879 -54150875 + MER53 DNA DNA 98 173 -16 * 377 303 28 7 chr15 31544919 31545064 -54150690 - MIR3 SINE MIR -31 177 30 367 258 22 22 chr15 31545666 31545755 -54149999 + MIR SINE MIR 3 91 -171 209 250 0 0 chr15 31546056 31546100 -54149654 - MIR SINE MIR -92 116 73 277 277 53 11 chr15 31547218 31547312 -54148442 - L2 LINE L2 -8 3305 3208 297 266 89 40 chr15 31548050 31548174 -54147580 - L2 LINE L2 -4 3309 3180 13586 125 29 69 chr15 31548305 31550291 -54145463 + Tigger1 DNA MER2_type 24 2020 -398 728 175 24 16 chr15 31550291 31550417 -54145337 + FLAM_A SINE Alu 2 128 -14 13586 125 29 69 chr15 31550417 31550801 -54144953 + Tigger1 DNA MER2_type 2020 2418 0 532 245 172 20 chr15 31550942 31551146 -54144608 + MIR SINE MIR 27 261 -1 2423 176 17 11 chr15 31551396 31551857 -54143897 + MLT1C LTR MaLR 4 467 0 227 291 0 0 chr15 31552924 31552979 -54142775 - L2 LINE L2 -8 3264 3210 258 81 0 0 chr15 31553215 31553252 -54142502 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 28 29 0 0 chr15 31554548 31554583 -54141171 + AT_rich Low_complexity Low_complexity 1 35 0 269 353 68 34 chr15 31554746 31554981 -54140773 - L2 LINE L2 -1 3271 3029 361 266 84 59 chr15 31555207 31555245 -54140509 - L3 LINE CR1 -578 999 963 2092 110 73 17 chr15 31555245 31555600 -54140154 + THE1C LTR MaLR 1 375 0 361 266 84 59 chr15 31555600 31555764 -54139990 - L3 LINE CR1 -614 963 792 400 326 137 17 chr15 31555809 31556042 -54139712 - MIR SINE MIR 0 262 2 2062 124 0 13 chr15 31556502 31556783 -54138971 + AluSx SINE Alu 1 289 -23 190 0 0 0 chr15 31556783 31556804 -54138950 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2062 124 0 13 chr15 31556804 31556828 -54138926 + AluSx SINE Alu 289 312 0 270 0 0 0 chr15 31557139 31557169 -54138585 + (TC)n Simple_repeat Simple_repeat 1 30 0 1596 171 31 27 chr15 31557169 31557462 -54138292 - AluJb SINE Alu -18 294 1 21 0 0 0 chr15 31557537 31557558 -54138196 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 31557928 31557959 -54137795 + GC_rich Low_complexity Low_complexity 1 31 0 36 23 0 0 chr15 31558342 31558385 -54137369 + AT_rich Low_complexity Low_complexity 1 43 0 254 29 29 0 chr15 31558866 31558901 -54136853 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 210 71 0 0 chr15 31558997 31559025 -54136729 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4902 94 15 17 chr15 31559190 31559944 -54135810 - L1MA3 LINE L1 0 6305 5554 2518 108 0 24 chr15 31559945 31560002 -54135752 + L1M1 LINE L1 5275 5332 -972 1925 180 0 0 chr15 31560002 31560308 -54135446 + AluSx SINE Alu 1 306 -6 2518 108 0 24 chr15 31560308 31560665 -54135089 + L1M1 LINE L1 5332 5679 -625 1579 185 26 13 chr15 31560709 31561012 -54134742 + AluJo SINE Alu 6 312 0 246 222 202 20 chr15 31561536 31561635 -54134119 + L2 LINE L2 3104 3220 -93 212 269 51 26 chr15 31561881 31561959 -54133795 + MIR SINE MIR 45 124 -84 422 221 171 0 chr15 31561961 31562119 -54133635 - ORSL DNA AcHobo 0 275 91 2307 219 11 48 chr15 31562120 31562781 -54132973 + MER92B LTR ERV1 1 636 0 248 217 96 12 chr15 31562784 31562867 -54132887 - ORSL DNA AcHobo -185 90 1 204 232 71 18 chr15 31562867 31562923 -54132831 + MIR3 SINE MIR 119 177 -31 620 171 0 0 chr15 31563379 31563484 -54132270 + U6 snRNA snRNA 1 105 -2 25 31 0 0 chr15 31563554 31563586 -54132168 + AT_rich Low_complexity Low_complexity 1 32 0 265 257 62 9 chr15 31563717 31563830 -54131924 - L1ME4a LINE L1 -219 5902 5784 353 280 67 7 chr15 31563907 31564057 -54131697 - L1ME4a LINE L1 -456 5665 5507 223 254 104 15 chr15 31564099 31564166 -54131588 + L2 LINE L2 3127 3199 -73 1678 237 102 29 chr15 31565498 31566025 -54129729 + MLT1F1 LTR MaLR 2 567 0 553 272 83 58 chr15 31566369 31566682 -54129072 + LTR67 LTR ERVL 237 557 0 233 337 47 23 chr15 31566687 31566773 -54128981 - MIR SINE MIR -117 145 58 607 307 86 54 chr15 31567284 31567691 -54128063 + HAL1 LINE L1 534 953 -1554 4738 161 34 13 chr15 31567727 31568562 -54127192 + L1MA8 LINE L1 5184 6040 -251 4325 110 13 0 chr15 31568562 31569189 -54126565 - MER41B LTR ERV1 0 635 1 4738 161 34 13 chr15 31569189 31569443 -54126311 + L1MA8 LINE L1 6040 6287 -4 1985 242 70 23 chr15 31569455 31569690 -54126064 + L1ME1 LINE L1 4623 4846 -1320 469 16 0 0 chr15 31569690 31569752 -54126002 - L1PA3 LINE L1 0 6155 6094 1985 242 70 23 chr15 31569752 31570740 -54125014 + L1ME1 LINE L1 4846 5908 -258 347 281 9 0 chr15 31570767 31570881 -54124873 + L1ME1 LINE L1 6030 6144 -22 388 35 35 0 chr15 31571442 31571500 -54124254 + (TC)n Simple_repeat Simple_repeat 1 60 0 870 278 104 35 chr15 31571899 31572418 -54123336 + HAL1 LINE L1 1397 1951 -556 2306 96 0 0 chr15 31572590 31572892 -54122862 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr15 31572894 31572923 -54122831 + (TA)n Simple_repeat Simple_repeat 1 29 0 659 280 102 36 chr15 31572963 31573327 -54122427 + LTR67 LTR ERVL 3 390 -167 235 210 16 0 chr15 31573364 31573426 -54122328 + LTR67 LTR ERVL 480 542 -15 241 329 92 24 chr15 31573663 31573827 -54121927 - MIR3 SINE MIR -31 177 3 355 322 41 20 chr15 31575819 31575965 -54119789 + L2 LINE L2 3164 3312 -1 23 33 0 0 chr15 31576104 31576134 -54119620 + AT_rich Low_complexity Low_complexity 1 30 0 202 329 27 0 chr15 31576148 31576221 -54119533 + CT-rich Low_complexity Low_complexity 3 77 0 * 213 250 0 0 chr15 31576182 31576230 -54119524 + T-rich Low_complexity Low_complexity 1 48 0 407 204 12 1 chr15 31576546 31576645 -54119109 + MLT1H1 LTR MaLR 1 103 -465 323 164 0 0 chr15 31576848 31576915 -54118839 + L1MA3 LINE L1 6239 6305 0 226 247 0 27 chr15 31576923 31576996 -54118758 + MLT-int LTR MaLR 22 92 -1643 216 306 56 28 chr15 31577038 31577110 -54118644 + L2 LINE L2 3199 3272 0 1293 134 5 0 chr15 31577189 31577391 -54118363 - THE1B LTR MaLR 0 364 162 7528 129 11 39 chr15 31577391 31578696 -54117058 - THE1B-int LTR MaLR -312 1268 1 2589 89 3 16 chr15 31578696 31578766 -54116988 - THE1B LTR MaLR 0 364 295 2351 130 5 19 chr15 31578766 31579135 -54116619 + THE1B LTR MaLR 1 364 0 2589 89 3 16 chr15 31579135 31579433 -54116321 - THE1B LTR MaLR -69 295 1 1610 112 23 8 chr15 31579433 31579691 -54116063 - THE1C LTR MaLR -113 262 1 9318 129 37 38 chr15 31579691 31581271 -54114483 - THE1C-int LTR MaLR 0 1580 3 2780 93 3 5 chr15 31581273 31581649 -54114105 - THE1C LTR MaLR 0 375 1 359 336 35 13 chr15 31581812 31582041 -54113713 + L1ME LINE L1 5482 5715 -406 1674 181 25 3 chr15 31582079 31582405 -54113349 - L1PA16 LINE L1 -24 6142 5810 21 0 0 0 chr15 31582418 31582439 -54113315 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 83 31 chr15 31582796 31582937 -54112817 - L2 LINE L2 -469 2845 2713 2271 133 14 8 chr15 31582937 31583299 -54112455 - THE1B LTR MaLR 0 364 1 9984 119 47 3 chr15 31583299 31584812 -54110942 - THE1B-int LTR MaLR 0 1580 1 2676 113 3 0 chr15 31584812 31585175 -54110579 - THE1B LTR MaLR 0 364 1 342 336 83 31 chr15 31585175 31585260 -54110494 - L2 LINE L2 -600 2714 2605 463 314 41 35 chr15 31585495 31585691 -54110063 - MIR SINE MIR -58 150 6 748 301 35 13 chr15 31585821 31586050 -54109704 + MIR SINE MIR 5 238 -24 342 199 22 88 chr15 31586059 31586161 -54109593 - MIR SINE MIR -63 145 61 189 0 0 0 chr15 31586313 31586334 -54109420 + (TAA)n Simple_repeat Simple_repeat 3 23 0 183 250 191 15 chr15 31586993 31587061 -54108693 - L2 LINE L2 -2 3311 3232 191 341 65 72 chr15 31588350 31588643 -54107111 - L2 LINE L2 -6 3266 2976 751 62 0 54 chr15 31588649 31588761 -54106993 + AluY SINE Alu 206 311 0 637 254 142 37 chr15 31590014 31590493 -54105261 - MLT1F1 LTR MaLR -9 533 11 181 269 0 97 chr15 31590554 31590647 -54105107 - L2 LINE L2 -1876 1438 1355 419 262 171 37 chr15 31590716 31590790 -54104964 + MER5A DNA MER1_type 4 67 -122 4535 70 10 3 chr15 31590790 31591373 -54104381 - LTR14C LTR ERVK 0 587 1 419 262 171 37 chr15 31591373 31591462 -54104292 + MER5A DNA MER1_type 67 189 0 1358 175 3 95 chr15 31591727 31592042 -54103712 + AluJo SINE Alu 1 286 -26 1012 262 17 60 chr15 31592449 31592968 -54102786 + L1MC5 LINE L1 6737 7233 -728 279 264 115 16 chr15 31593058 31593240 -54102514 + L1MC5 LINE L1 7235 7434 -527 2006 156 3 10 chr15 31593266 31593580 -54102174 - AluJb SINE Alu 0 312 1 1612 261 33 65 chr15 31593678 31594371 -54101383 + L1MCb LINE L1 3 673 -5372 3176 273 32 27 chr15 31594419 31596502 -54099252 + L1MCb LINE L1 1710 3761 -2803 510 171 111 0 chr15 31596521 31596600 -54099154 + L1MA9 LINE L1 18 115 -7450 248 0 31 0 chr15 31596600 31596632 -54099122 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 510 171 111 0 chr15 31596632 31596669 -54099085 + L1MA9 LINE L1 115 147 -7418 1475 227 26 26 chr15 31596673 31597060 -54098694 + L1MA9 LINE L1 364 750 -6815 4988 184 18 1 chr15 31597064 31598126 -54097628 + L1MA9 LINE L1 4227 5306 -2259 482 127 0 0 chr15 31598240 31598319 -54097435 - L1MA1 LINE L1 -105 6197 6119 2431 137 2 14 chr15 31598330 31598760 -54096994 + L1MCb LINE L1 4313 4737 -1827 1707 78 30 7 chr15 31598759 31599028 -54096726 + L1MA1 LINE L1 5923 6197 -105 * 2251 245 46 39 chr15 31599026 31599932 -54095822 + L1M4 LINE L1 3328 4240 -1906 4937 141 22 13 chr15 31600047 31600969 -54094785 + L1MA9 LINE L1 6801 7730 -1 332 250 76 62 chr15 31601091 31601235 -54094519 + MLT1D LTR MaLR 265 410 -95 68 91 0 0 chr15 31601345 31601477 -54094277 + AT_rich Low_complexity Low_complexity 1 132 0 37 127 0 0 chr15 31601521 31601671 -54094083 + AT_rich Low_complexity Low_complexity 1 150 0 4101 31 90 4 chr15 31602446 31602958 -54092796 + LTR6B LTR ERV1 3 558 0 461 331 74 35 chr15 31603117 31603455 -54092299 + L2 LINE L2 2550 2900 -414 2043 100 18 4 chr15 31604040 31604320 -54091434 - AluSq SINE Alu -29 284 1 1030 151 73 19 chr15 31604342 31604548 -54091206 - L1PA16 LINE L1 -10 6156 5940 854 157 0 8 chr15 31605113 31605247 -54090507 + AluSg/x SINE Alu 136 268 -44 228 119 95 0 chr15 31605249 31605291 -54090463 + Alu SINE Alu 241 286 -16 863 164 0 8 chr15 31605431 31605565 -54090189 + FLAM_C SINE Alu 1 133 0 2018 157 3 3 chr15 31605614 31605926 -54089828 - AluSx SINE Alu 0 312 1 1856 159 14 3 chr15 31605936 31606232 -54089522 - AluJo SINE Alu -13 299 1 252 0 0 0 chr15 31606280 31606308 -54089446 + (CTTG)n Simple_repeat Simple_repeat 1 28 0 3832 173 59 31 chr15 31606403 31607307 -54088447 - L1MA10 LINE L1 -38 6296 5368 1347 179 143 48 chr15 31607304 31607689 -54088065 + L1 LINE L1 4878 5312 -834 * 246 32 0 0 chr15 31607689 31607720 -54088034 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1347 179 143 48 chr15 31607720 31607774 -54087980 + L1 LINE L1 5312 5359 -787 1110 146 0 0 chr15 31608302 31608473 -54087281 - AluSg/x SINE Alu -4 308 138 263 146 73 0 chr15 31608476 31608531 -54087223 + Charlie1 DNA MER1_type 2702 2760 -1 507 120 0 0 chr15 31609496 31609571 -54086183 - AluS SINE Alu -236 76 2 2932 202 59 10 chr15 31609958 31610635 -54085119 - MER67C LTR ERV1 0 710 1 4277 157 42 57 chr15 31610992 31611905 -54083849 - MER4D LTR ERV1 0 903 5 1652 304 57 48 chr15 31612082 31612876 -54082878 + L2 LINE L2 1994 2794 -520 29 0 0 0 chr15 31612958 31612987 -54082767 + AT_rich Low_complexity Low_complexity 1 29 0 438 216 39 52 chr15 31613015 31613168 -54082586 - Charlie2 DNA MER1_type -570 2292 2142 1026 239 123 28 chr15 31613199 31613597 -54082157 - Charlie2b DNA MER1_type -1196 1586 1151 3153 107 29 68 chr15 31613602 31614218 -54081536 + MER4B LTR ERV1 1 755 -24 2032 140 59 8 chr15 31614218 31614575 -54081179 - THE1C LTR MaLR 0 375 1 3153 107 29 68 chr15 31614575 31614596 -54081158 + MER4B LTR ERV1 755 775 -4 722 257 53 50 chr15 31614619 31614942 -54080812 - Charlie2b DNA MER1_type -1643 1139 816 1976 119 3 22 chr15 31615014 31615366 -54080388 - MER4A LTR ERV1 0 664 261 610 124 0 10 chr15 31615366 31615463 -54080291 - MER4A LTR ERV1 -566 98 3 15759 103 61 14 chr15 31615471 31618109 -54077645 - MER4A-int LTR ERV1 -2 6596 3837 421 217 36 32 chr15 31618282 31618414 -54077340 + MIR SINE MIR 71 205 -57 1775 131 3 62 chr15 31619094 31619385 -54076369 - AluSp SINE Alu -39 274 1 5051 179 38 44 chr15 31619386 31620504 -54075250 + L1MC3 LINE L1 5790 6900 -885 1057 235 103 62 chr15 31620504 31620666 -54075088 + MLT1D LTR MaLR 1 155 -350 2091 134 3 0 chr15 31620666 31620973 -54074781 - AluSx SINE Alu -4 308 1 1057 235 103 62 chr15 31620973 31621295 -54074459 + MLT1D LTR MaLR 155 505 0 1285 126 198 159 chr15 31621295 31621495 -54074259 + L1MC3 LINE L1 6896 7087 -698 259 263 26 13 chr15 31621495 31621571 -54074183 + MLT1F1 LTR MaLR 35 111 -456 1285 126 198 159 chr15 31621571 31621779 -54073975 + L1MC3 LINE L1 7087 7398 -387 * 1289 164 4 28 chr15 31621766 31622035 -54073719 + L1MC1 LINE L1 5672 5824 -332 7609 32 0 0 chr15 31622739 31624088 -54071666 + L1PA3 LINE L1 4806 6154 -1 25 0 0 0 chr15 31624089 31624114 -54071640 + AT_rich Low_complexity Low_complexity 1 25 0 591 146 27 27 chr15 31624132 31624242 -54071512 + L1MC3 LINE L1 7393 7502 -283 393 342 115 33 chr15 31624439 31624769 -54070985 - L1ME LINE L1 -5520 550 194 281 303 15 0 chr15 31624819 31624885 -54070869 - MIR SINE MIR -184 78 12 376 340 7 43 chr15 31625069 31625210 -54070544 + MIR3 SINE MIR 20 155 -53 266 274 0 27 chr15 31625515 31625588 -54070166 + LTR67 LTR ERVL 95 165 -392 271 330 120 31 chr15 31626215 31626406 -54069348 + L2 LINE L2 2293 2500 -814 461 293 33 33 chr15 31626705 31626886 -54068868 + MIR SINE MIR 58 238 -24 277 239 18 62 chr15 31627369 31627482 -54068272 + L1MC/D LINE L1 5650 5757 -2051 2114 76 3 40 chr15 31627776 31628077 -54067677 - AluY SINE Alu 0 311 22 22 0 0 0 chr15 31628080 31628102 -54067652 + AT_rich Low_complexity Low_complexity 1 22 0 2006 130 3 3 chr15 31628740 31629032 -54066722 - AluSx SINE Alu -20 292 1 564 300 108 9 chr15 31629564 31629596 -54066158 - MIR SINE MIR 0 262 235 186 43 0 0 chr15 31629596 31629619 -54066135 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 423 0 0 0 chr15 31629618 31629665 -54066089 + (TA)n Simple_repeat Simple_repeat 1 47 0 564 300 108 9 chr15 31629619 31629855 -54065899 - MIR SINE MIR -27 235 18 326 259 45 36 chr15 31630516 31630628 -54065126 - MIR SINE MIR -72 190 78 2514 51 0 0 chr15 31630710 31631002 -54064752 - AluY SINE Alu -19 292 1 691 266 27 76 chr15 31631469 31631732 -54064022 + MIR SINE MIR 3 252 -10 237 65 0 0 chr15 31631935 31631966 -54063788 + (CAT)n Simple_repeat Simple_repeat 3 33 0 423 237 88 0 chr15 31633641 31633755 -54061999 + L1MC4 LINE L1 7914 8037 -5 1986 114 4 0 chr15 31635570 31635842 -54059912 + AluSg SINE Alu 1 273 -37 630 26 0 0 chr15 31636335 31636411 -54059343 + (TTTTA)n Simple_repeat Simple_repeat 2 77 0 2093 100 0 24 chr15 31636415 31636706 -54059048 - AluSx SINE Alu -28 284 1 207 0 0 0 chr15 31637130 31637153 -54058601 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr15 31637312 31637333 -54058421 + AT_rich Low_complexity Low_complexity 1 21 0 189 427 0 0 chr15 31638386 31638482 -54057272 + MIR3 SINE MIR 108 203 -5 664 209 65 39 chr15 31638626 31638779 -54056975 + FRAM SINE Alu 2 158 -18 21 36 0 0 chr15 31640148 31640176 -54055578 + AT_rich Low_complexity Low_complexity 1 28 0 1046 177 22 80 chr15 31640503 31640729 -54055025 + MER20 DNA MER1_type 2 214 -5 257 333 133 17 chr15 31641055 31641175 -54054579 - MER5B DNA MER1_type -4 174 41 321 293 70 83 chr15 31641210 31641367 -54054387 - MER5B DNA MER1_type 0 178 24 61 88 0 0 chr15 31641670 31641829 -54053925 + AT_rich Low_complexity Low_complexity 1 159 0 306 376 59 27 chr15 31641988 31642174 -54053580 - HAL1 LINE L1 -2315 192 1 219 328 166 15 chr15 31642181 31642513 -54053241 + L2 LINE L2 1993 2374 -940 738 294 0 0 chr15 31642612 31642792 -54052962 + MER5A DNA MER1_type 9 188 -1 25 51 0 0 chr15 31642906 31642945 -54052809 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chr15 31643049 31643100 -54052654 + AT_rich Low_complexity Low_complexity 1 51 0 461 290 83 44 chr15 31643391 31643798 -54051956 - L1MEc LINE L1 -4641 1755 1333 309 0 98 0 chr15 31644961 31645012 -54050742 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1943 112 0 4 chr15 31645017 31645284 -54050470 - AluSx SINE Alu -46 266 1 180 356 100 0 chr15 31645596 31645686 -54050068 + MIR3 SINE MIR 97 195 -13 3608 143 35 20 chr15 31646284 31646537 -54049217 + L1MA9 LINE L1 5536 5784 -528 1708 145 31 72 chr15 31646537 31646896 -54048858 + MER2 DNA MER2_type 1 344 0 3608 143 35 20 chr15 31646896 31647306 -54048448 + L1MA9 LINE L1 5784 6209 -103 316 137 20 0 chr15 31647306 31647357 -54048397 - MSTA LTR MaLR 0 428 377 1566 124 159 19 chr15 31647517 31647832 -54047922 - MSTA LTR MaLR -69 359 1 465 172 10 0 chr15 31647833 31647932 -54047822 + L1MA9 LINE L1 6206 6305 -7 4696 162 17 4 chr15 31648094 31648970 -54046784 + L1MC1 LINE L1 5185 6072 -261 1343 161 9 0 chr15 31648970 31649181 -54046573 + AluSg/x SINE Alu 84 296 -16 416 118 3 20 chr15 31649181 31649262 -54046492 + L1MC1 LINE L1 6068 6126 -207 321 154 0 0 chr15 31649275 31649327 -54046427 + L1MC4 LINE L1 6652 6703 -1339 229 95 0 0 chr15 31649343 31649385 -54046369 - LTR66 LTR ERVL -171 439 398 593 136 13 129 chr15 31649385 31649540 -54046214 + L1MC1 LINE L1 6195 6331 -2 1688 209 0 7 chr15 31649649 31649946 -54045808 + AluJb SINE Alu 1 295 -17 1098 113 0 0 chr15 31650131 31650272 -54045482 + AluSq/x SINE Alu 10 150 -162 456 114 0 25 chr15 31650272 31650351 -54045403 + Alu SINE Alu 233 309 -1 2271 125 11 19 chr15 31651145 31651512 -54044242 - THE1B LTR MaLR 0 364 1 444 275 7 0 chr15 31651558 31651679 -54044075 - MIR SINE MIR -53 155 31 227 339 29 98 chr15 31652118 31652528 -54043226 + L2 LINE L2 2365 2746 -568 2233 175 14 34 chr15 31652817 31653435 -54042319 + L1MB3 LINE L1 5393 5966 -217 225 279 16 16 chr15 31653455 31653516 -54042238 + L2 LINE L2 3126 3186 -86 729 260 59 0 chr15 31654492 31654696 -54041058 - MER20 DNA MER1_type -2 217 2 183 381 14 54 chr15 31654815 31654962 -54040792 + L2 LINE L2 3132 3272 0 26 0 0 0 chr15 31656787 31656813 -54038941 + AT_rich Low_complexity Low_complexity 1 26 0 229 355 159 0 chr15 31657646 31657784 -54037970 + L1MEd LINE L1 126 285 -5834 33 0 0 0 chr15 31657906 31657939 -54037815 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr15 31657978 31658013 -54037741 + AT_rich Low_complexity Low_complexity 1 35 0 1786 151 11 0 chr15 31658110 31658381 -54037373 + AluSx SINE Alu 1 274 -38 317 202 170 0 chr15 31658388 31658482 -54037272 + L1M4 LINE L1 5477 5586 -598 * 571 195 14 87 chr15 31658477 31658709 -54037045 + L1MA10 LINE L1 5952 6329 -5 710 243 82 127 chr15 31658726 31659278 -54036476 + L1MEd LINE L1 622 1148 -4971 1408 245 90 26 chr15 31659935 31660098 -54035656 + L1MC4a LINE L1 6443 6594 -1214 405 0 0 0 chr15 31660098 31660143 -54035611 + (CA)n Simple_repeat Simple_repeat 2 46 0 1408 245 90 26 chr15 31660143 31660444 -54035310 + L1MC4a LINE L1 6594 6937 -871 418 298 92 51 chr15 31660449 31661645 -54034109 + L1MEd LINE L1 2136 3380 -2749 1525 140 7 55 chr15 31661673 31661993 -54033761 - AluSq SINE Alu 0 313 16 2269 43 43 4 chr15 31662704 31662981 -54032773 - AluY SINE Alu -12 299 12 193 276 13 40 chr15 31663531 31663607 -54032147 + L2 LINE L2 2202 2275 -1039 1402 119 78 11 chr15 31663818 31664086 -54031668 - AluY SINE Alu -14 297 12 188 253 36 60 chr15 31664145 31664228 -54031526 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 31664317 31664416 -54031338 + MIR SINE MIR 98 200 -62 318 320 0 20 chr15 31664560 31664660 -54031094 + L2 LINE L2 3182 3279 -34 312 240 25 0 chr15 31664933 31665054 -54030700 + CT-rich Low_complexity Low_complexity 2 125 0 294 252 176 19 chr15 31665500 31665659 -54030095 - L2 LINE L2 -140 3173 2990 224 204 140 65 chr15 31666781 31666874 -54028880 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 31666880 31667176 -54028578 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 31667176 31667223 -54028531 + L3 LINE CR1 1524 1570 -7 548 188 0 21 chr15 31668768 31668864 -54026890 + FRAM SINE Alu 21 114 -62 315 0 0 0 chr15 31668919 31668954 -54026800 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 203 233 0 0 chr15 31669103 31669146 -54026608 + L3 LINE CR1 995 1037 -540 6292 29 0 0 chr15 31669749 31670513 -54025241 - L1HS LINE L1 -2303 3843 3080 * 13285 15 0 0 chr15 31670512 31672833 -54022921 + L1HS LINE L1 3835 6155 0 252 307 111 13 chr15 31673588 31673813 -54021941 + L1ME LINE L1 5616 5862 -259 1926 148 0 7 chr15 31676002 31676299 -54019455 + AluJb SINE Alu 1 295 -17 237 260 24 114 chr15 31676867 31676990 -54018764 - L2 LINE L2 -1 3271 3160 412 344 79 36 chr15 31777559 31777864 -53917890 - L3 LINE CR1 -1 1576 1259 247 272 94 29 chr15 31778215 31778462 -53917292 + L1M3 LINE L1 5180 5446 -737 28 29 0 0 chr15 31778762 31778797 -53916957 + AT_rich Low_complexity Low_complexity 1 35 0 257 305 13 13 chr15 31780344 31780498 -53915256 + (CCCCAG)n Simple_repeat Simple_repeat 1 154 0 527 291 6 6 chr15 31781550 31781708 -53914046 - LTR41 LTR ERVL -615 158 1 301 337 0 0 chr15 31781774 31781872 -53913882 + MIR SINE MIR 59 156 -106 21 0 0 0 chr15 31781875 31781896 -53913858 + AT_rich Low_complexity Low_complexity 1 21 0 2729 198 8 11 chr15 31782298 31782905 -53912849 + L1 LINE L1 4759 5363 -783 4524 182 29 13 chr15 31782991 31783924 -53911830 - L1MA9 LINE L1 -1 6311 5364 258 217 43 14 chr15 31783938 31784007 -53911747 - MIR SINE MIR -72 136 66 1410 212 90 40 chr15 31784345 31784722 -53911032 + MSTD LTR MaLR 1 396 0 1031 190 58 16 chr15 31784953 31785264 -53910490 - MER33 DNA MER1_type 0 324 1 190 323 82 94 chr15 31785377 31785705 -53910049 + L2 LINE L2 2949 3272 0 387 0 0 0 chr15 31785940 31785983 -53909771 + (CA)n Simple_repeat Simple_repeat 2 44 0 187 325 74 61 chr15 31786778 31786916 -53908838 + L2 LINE L2 3019 3154 -159 230 0 0 32 chr15 31786916 31786947 -53908807 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2219 95 0 3 chr15 31786949 31787232 -53908522 - AluSq SINE Alu -31 282 1 187 325 74 61 chr15 31787232 31787321 -53908433 + L2 LINE L2 3154 3252 -61 1720 124 62 8 chr15 31787543 31787802 -53907952 - AluSx SINE Alu -16 296 24 199 154 77 0 chr15 31788835 31788874 -53906880 - L2 LINE L2 -11 3302 3261 230 155 52 35 chr15 31790731 31790789 -53904965 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 613 235 28 62 chr15 31792031 31792210 -53903544 + MER20 DNA MER1_type 1 173 -46 315 258 113 38 chr15 31792568 31792727 -53903027 - L3 LINE CR1 -98 1479 1309 220 291 114 0 chr15 31792994 31793073 -53902681 + L2 LINE L2 3204 3291 -22 245 50 0 25 chr15 31793720 31793760 -53901994 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 307 302 40 67 chr15 31794079 31794228 -53901526 - MIR SINE MIR -50 212 68 299 247 27 0 chr15 31794416 31794489 -53901265 + L2 LINE L2 2986 3060 -212 552 56 0 0 chr15 31794650 31794722 -53901032 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 267 320 60 10 chr15 31795192 31795292 -53900462 - L3 LINE CR1 -243 1334 1230 226 306 118 0 chr15 31796730 31796815 -53898939 - MIR SINE MIR -148 114 20 204 40 0 0 chr15 31797304 31797329 -53898425 + (A)n Simple_repeat Simple_repeat 1 25 0 737 280 106 32 chr15 31797527 31797838 -53897916 + MER45C DNA AcHobo 1 376 -577 425 245 7 6 chr15 31797843 31797986 -53897768 + MER45C DNA AcHobo 729 952 -1 264 372 58 25 chr15 31798098 31798375 -53897379 + L2 LINE L2 1715 2000 -1314 28 29 0 0 chr15 31798540 31798575 -53897179 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 31798990 31799017 -53896737 + AT_rich Low_complexity Low_complexity 1 27 0 275 54 89 27 chr15 31799089 31799201 -53896553 + (TA)n Simple_repeat Simple_repeat 1 119 0 242 276 28 90 chr15 31799210 31799355 -53896399 - MIR SINE MIR -58 204 69 203 307 23 45 chr15 31799398 31799486 -53896268 - L3 LINE CR1 -87 1490 1405 588 273 8 0 chr15 31800101 31800222 -53895532 + MER63A DNA MER1_type 89 210 0 856 237 116 0 chr15 31800236 31800451 -53895303 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 31800461 31800482 -53895272 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 31800584 31800605 -53895149 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr15 31800693 31800726 -53895028 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 345 69 63 chr15 31800935 31801132 -53894622 - L3 LINE CR1 -1 1576 1374 2058 106 3 7 chr15 31801132 31801455 -53894299 - AluY SINE Alu 0 322 1 351 345 69 63 chr15 31801455 31801575 -53894179 - L3 LINE CR1 -203 1374 1256 2212 103 7 3 chr15 31802168 31802469 -53893285 - AluSp SINE Alu -11 302 1 604 274 0 25 chr15 31802564 31802721 -53893033 + MLT1E LTR MaLR 9 161 -432 186 43 0 0 chr15 31803060 31803083 -53892671 + (AATTG)n Simple_repeat Simple_repeat 3 25 0 2599 40 0 46 chr15 31804137 31804463 -53891291 - AluY SINE Alu 0 311 1 271 342 17 34 chr15 31805451 31805568 -53890186 - L2 LINE L2 -4 3268 3154 229 301 12 36 chr15 31807062 31807145 -53888609 - MIR SINE MIR -73 189 109 30 0 0 0 chr15 31807258 31807288 -53888466 + AT_rich Low_complexity Low_complexity 1 30 0 2583 197 54 13 chr15 31807514 31808418 -53887336 + L1MB8 LINE L1 4890 5837 -341 1150 224 141 0 chr15 31810125 31810380 -53885374 + AluJo SINE Alu 1 291 -11 561 222 142 23 chr15 31810821 31810997 -53884757 + MIR SINE MIR 29 225 -37 211 369 0 0 chr15 31812974 31813058 -53882696 - MIR SINE MIR -109 153 70 217 259 339 0 chr15 31813240 31813352 -53882402 - L2 LINE L2 0 3313 3164 1678 288 155 32 chr15 31813556 31813804 -53881950 + L2 LINE L2 2123 2339 -974 2032 108 42 3 chr15 31813804 31814092 -53881662 - AluSx SINE Alu -13 299 1 1678 288 155 32 chr15 31814092 31814896 -53880858 + L2 LINE L2 2339 3313 0 1949 93 12 0 chr15 31815064 31815321 -53880433 + AluSc SINE Alu 45 304 -5 377 273 141 15 chr15 31815937 31816135 -53879619 + Charlie2b DNA MER1_type 812 1034 -1748 4597 190 22 16 chr15 31816163 31817633 -53878121 - L1MA9 LINE L1 -39 6337 4852 621 232 77 52 chr15 31817632 31817826 -53877928 - L1MA9 LINE L1 -5938 203 5 * 345 292 22 15 chr15 31817832 31817969 -53877785 + Charlie2b DNA MER1_type 1035 1172 -1610 2636 196 36 24 chr15 31818334 31818791 -53876963 - MER74A LTR ERVL 0 558 91 2495 50 33 0 chr15 31818791 31819090 -53876664 + AluY SINE Alu 1 309 -2 2636 196 36 24 chr15 31819090 31819183 -53876571 - MER74A LTR ERVL -467 91 1 21 36 0 0 chr15 31819982 31820010 -53875744 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr15 31820113 31820148 -53875606 + AT_rich Low_complexity Low_complexity 1 35 0 297 318 139 0 chr15 31820189 31820318 -53875436 + MER5A DNA MER1_type 43 189 0 2517 43 0 10 chr15 31820509 31820812 -53874942 + AluY SINE Alu 3 302 -9 1394 258 129 48 chr15 31821052 31821550 -53874204 + Charlie2b DNA MER1_type 1215 1671 -1191 1653 223 8 16 chr15 31821550 31821918 -53873836 - MLT1A1 LTR MaLR 0 365 1 1394 258 129 48 chr15 31821918 31822373 -53873381 + Charlie2b DNA MER1_type 1671 2245 -537 226 206 44 29 chr15 31822388 31822456 -53873298 - HsTC2 DNA Tc2 0 1898 1830 677 232 26 10 chr15 31822568 31822762 -53872992 + L1MA9 LINE L1 6078 6274 -38 294 244 13 0 chr15 31822794 31822872 -53872882 - HsTC2 DNA Tc2 -1819 79 1 1289 195 83 56 chr15 31822888 31823262 -53872492 + MLT1B LTR MaLR 1 384 -6 519 216 119 31 chr15 31823318 31823637 -53872117 + Charlie2b DNA MER1_type 2288 2634 -148 535 154 22 0 chr15 31823637 31823728 -53872026 + MSTA LTR MaLR 1 93 -335 * 766 215 108 14 chr15 31823721 31823935 -53871819 + MSTA LTR MaLR 194 427 -1 288 283 10 0 chr15 31823935 31824030 -53871724 + Charlie2b DNA MER1_type 2629 2724 -58 346 294 77 74 chr15 31824098 31824424 -53871330 + MLT1I LTR MaLR 83 409 0 23 0 0 0 chr15 31825064 31825087 -53870667 + AT_rich Low_complexity Low_complexity 1 23 0 4793 156 8 27 chr15 31827902 31828150 -53867604 + L1PB3 LINE L1 4979 5230 -924 541 101 0 13 chr15 31828150 31828229 -53867525 - MADE1 DNA Mariner -2 78 1 4793 156 8 27 chr15 31828229 31829076 -53866678 + L1PB3 LINE L1 5230 6050 -104 475 188 0 0 chr15 31829082 31829167 -53866587 - L1P5 LINE L1 -357 5797 5713 689 127 8 8 chr15 31829172 31829290 -53866464 + L1PB3 LINE L1 6036 6153 -1 657 283 50 12 chr15 31829913 31830153 -53865601 + HAL1 LINE L1 1471 1719 -788 2052 113 3 3 chr15 31830219 31830528 -53865226 + AluSx SINE Alu 1 309 0 283 273 91 29 chr15 31830858 31831067 -53864687 + HAL1 LINE L1 2172 2393 -114 22 56 0 0 chr15 31831142 31831178 -53864576 + AT_rich Low_complexity Low_complexity 1 36 0 333 324 66 15 chr15 31831337 31831596 -53864158 + L1ME4a LINE L1 5595 5866 -255 24 53 0 0 chr15 31831615 31831653 -53864101 + AT_rich Low_complexity Low_complexity 1 38 0 1783 155 13 25 chr15 31832252 31832568 -53863186 + AluJo SINE Alu 1 312 0 377 328 21 47 chr15 31832608 31832800 -53862954 + MER5A DNA MER1_type 1 187 -2 271 261 0 0 chr15 31832984 31833049 -53862705 + L1MDa LINE L1 1621 1685 -4855 * 335 263 94 75 chr15 31833032 31833290 -53862464 + L1MD2 LINE L1 5883 6112 -52 21 36 0 0 chr15 31833861 31833889 -53861865 + AT_rich Low_complexity Low_complexity 1 28 0 1607 216 0 0 chr15 31834112 31834442 -53861312 - AluJo SINE Alu 0 331 2 1720 185 99 31 chr15 31834458 31834874 -53860880 - L1MA9 LINE L1 -39 6273 5830 25 51 0 0 chr15 31836284 31836323 -53859431 + AT_rich Low_complexity Low_complexity 1 39 0 2236 73 0 4 chr15 31836372 31836646 -53859108 - AluY SINE Alu -15 296 24 7030 53 5 1 chr15 31837171 31838337 -53857417 + L1PA6 LINE L1 4976 6144 -10 342 0 0 0 chr15 31838338 31838376 -53857378 + (CA)n Simple_repeat Simple_repeat 1 38 0 2185 111 0 0 chr15 31838397 31838695 -53857059 - AluY SINE Alu -13 298 1 323 242 48 97 chr15 31839421 31839586 -53856168 - MER5A DNA MER1_type -29 160 4 28 29 0 0 chr15 31839902 31839937 -53855817 + AT_rich Low_complexity Low_complexity 1 35 0 483 303 0 51 chr15 31841809 31841987 -53853767 + MIR SINE MIR 7 175 -87 202 351 43 11 chr15 31844049 31844143 -53851611 + MER5B DNA MER1_type 31 127 -51 23 33 0 0 chr15 31844161 31844191 -53851563 + AT_rich Low_complexity Low_complexity 1 30 0 605 337 5 16 chr15 31844619 31844809 -53850945 + MER5A DNA MER1_type 1 188 -1 23 54 0 0 chr15 31847388 31847425 -53848329 + AT_rich Low_complexity Low_complexity 1 37 0 25 23 0 23 chr15 31847957 31847986 -53847768 + AT_rich Low_complexity Low_complexity 1 30 -12 2234 103 0 0 chr15 31847986 31848277 -53847477 - AluSx SINE Alu -21 291 1 25 23 0 23 chr15 31848277 31848290 -53847464 + AT_rich Low_complexity Low_complexity 30 42 0 622 139 0 0 chr15 31848290 31848391 -53847363 - L1MA2 LINE L1 0 6304 6204 316 240 54 8 chr15 31849033 31849162 -53846592 - MER69 DNA AcHobo -8 2518 2384 5751 206 62 8 chr15 31849166 31849605 -53846149 + L1 LINE L1 2469 2883 -3263 432 0 0 0 chr15 31849605 31849653 -53846101 + (CA)n Simple_repeat Simple_repeat 1 48 0 5751 206 62 8 chr15 31849653 31850668 -53845086 + L1 LINE L1 2883 4001 -2145 435 321 43 89 chr15 31850813 31851208 -53844546 + L2 LINE L2 2896 3272 0 289 328 104 0 chr15 31851217 31851351 -53844403 + MIR3 SINE MIR 54 201 -7 513 306 11 22 chr15 31851569 31851749 -53844005 - MER5A DNA MER1_type -5 184 7 1259 128 5 29 chr15 31851906 31852110 -53843644 + MER20 DNA MER1_type 18 216 -3 24 0 0 0 chr15 31852156 31852180 -53843574 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 31852902 31852924 -53842830 + AT_rich Low_complexity Low_complexity 1 22 0 314 250 68 11 chr15 31853287 31853375 -53842379 - L3b LINE CR1 -197 1386 1294 324 295 216 0 chr15 31853562 31853701 -53842053 - MER5A DNA MER1_type -5 184 16 1854 157 0 17 chr15 31853701 31853877 -53841877 - AluJb SINE Alu -23 289 118 246 81 0 0 chr15 31853877 31853914 -53841840 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1854 157 0 17 chr15 31853914 31854031 -53841723 - AluJb SINE Alu -194 118 1 2151 126 0 0 chr15 31854116 31854410 -53841344 + AluSx SINE Alu 1 294 -18 604 274 106 21 chr15 31854598 31854835 -53840919 + MER90 LTR ERV1 87 343 -232 484 201 166 79 chr15 31854838 31855116 -53840638 + MLT1D LTR MaLR 1 302 -203 188 254 36 0 chr15 31855167 31855222 -53840532 - L2 LINE L2 -536 2778 2722 183 227 23 0 chr15 31855302 31855346 -53840408 - MIR SINE MIR -65 143 99 1249 180 0 0 chr15 31855359 31855570 -53840184 + MLT1D LTR MaLR 295 505 0 835 297 5 5 chr15 31855570 31855786 -53839968 + MER90 LTR ERV1 399 614 0 288 364 91 6 chr15 31856061 31856226 -53839528 - L2 LINE L2 -561 2753 2575 2172 148 85 10 chr15 31856364 31856762 -53838992 + MSTA LTR MaLR 1 428 0 714 298 14 9 chr15 31856875 31857093 -53838661 + MER90 LTR ERV1 396 614 0 180 323 234 16 chr15 31857155 31857279 -53838475 + MIR SINE MIR 41 191 -71 185 325 96 0 chr15 31857489 31857572 -53838182 + MIR SINE MIR 89 179 -83 236 279 15 15 chr15 31858173 31858241 -53837513 + HAL1 LINE L1 784 851 -1656 3369 216 112 59 chr15 31858271 31858317 -53837437 + L1MC4 LINE L1 6735 6777 -1265 2382 78 3 0 chr15 31858317 31858611 -53837143 - AluSc SINE Alu -14 295 1 2471 60 0 10 chr15 31858617 31858919 -53836835 - AluY SINE Alu -12 299 1 3369 216 112 59 chr15 31858919 31859954 -53835800 + L1MC4 LINE L1 6781 7900 -142 693 89 24 0 chr15 31859954 31860078 -53835676 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 3369 216 112 59 chr15 31860078 31860230 -53835524 + L1MC4 LINE L1 7900 8042 0 239 272 142 59 chr15 31860291 31860460 -53835294 - L3 LINE CR1 0 1577 1395 189 336 49 49 chr15 31860701 31860823 -53834931 + L2 LINE L2 3192 3313 0 4807 23 0 0 chr15 31861148 31861708 -53834046 - L1PA3 LINE L1 0 6155 5596 23 54 0 0 chr15 31862189 31862226 -53833528 + AT_rich Low_complexity Low_complexity 1 37 0 619 200 66 36 chr15 31863549 31863718 -53832036 + L1MB5 LINE L1 6012 6184 0 261 324 122 43 chr15 31864750 31864889 -53830865 - MER5A DNA MER1_type -4 185 36 783 265 76 44 chr15 31865336 31865657 -53830097 - MIR SINE MIR 0 262 2 576 319 78 16 chr15 31865789 31866159 -53829595 - MLT1I LTR MaLR -15 394 2 853 140 56 34 chr15 31867248 31867426 -53828328 - L1MB7 LINE L1 -2 6182 6001 2213 74 0 7 chr15 31867531 31867849 -53827905 - AluSx SINE Alu 0 316 1 1251 201 36 0 chr15 31867908 31868197 -53827557 - L1MB7 LINE L1 -222 5962 5660 620 324 114 21 chr15 31868199 31868665 -53827089 + L2 LINE L2 2354 2862 -452 468 252 50 34 chr15 31868705 31868824 -53826930 + L2 LINE L2 3180 3300 -13 320 0 0 24 chr15 31868841 31868882 -53826872 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 949 106 30 0 chr15 31869160 31869292 -53826462 + AluSq/x SINE Alu 1 136 -176 2438 57 10 3 chr15 31870464 31870765 -53824989 - AluY SINE Alu -8 303 1 297 280 97 11 chr15 31870797 31870890 -53824864 - MIR3 SINE MIR -16 192 92 1492 253 102 55 chr15 31871017 31871583 -53824171 + MLT1E LTR MaLR 1 593 0 254 278 0 0 chr15 31872181 31872253 -53823501 + L1ME LINE L1 5800 5871 -250 251 307 11 0 chr15 31872432 31872520 -53823234 - L2 LINE L2 -189 3083 2995 8783 27 0 0 chr15 31873261 31874358 -53821396 - L1P LINE L1 -3214 2932 1836 6977 11 0 1 chr15 31874357 31875186 -53820568 + L1HS LINE L1 5328 6155 0 * 259 107 0 53 chr15 31875194 31875228 -53820526 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 -36 2055 128 0 0 chr15 31875228 31875510 -53820244 - AluSq SINE Alu -31 282 1 259 107 0 53 chr15 31875510 31875550 -53820204 + (CAAAAA)n Simple_repeat Simple_repeat 36 72 0 350 332 108 36 chr15 31875917 31876194 -53819560 + L1MC4a LINE L1 6167 6463 -1345 670 256 38 80 chr15 31876309 31876684 -53819070 + L1MC4 LINE L1 6658 7024 -974 29 0 0 0 chr15 31876685 31876714 -53819040 + AT_rich Low_complexity Low_complexity 1 29 0 476 95 0 14 chr15 31876849 31876923 -53818831 - MADE1 DNA Mariner -5 75 3 810 224 0 0 chr15 31877092 31877244 -53818510 + FRAM SINE Alu 1 151 -25 2314 156 27 0 chr15 31977317 31977760 -53717994 + L1P LINE L1 4879 5333 -813 4033 107 19 0 chr15 31977764 31978425 -53717329 + L1PA10 LINE L1 5215 5886 -282 965 281 66 24 chr15 31978555 31979333 -53716421 - L1MEc LINE L1 -4917 1479 670 3539 172 52 28 chr15 31979434 31979494 -53716260 + MER21A LTR ERV1 23 80 -851 222 37 0 0 chr15 31979494 31979521 -53716233 + (TC)n Simple_repeat Simple_repeat 2 28 0 3539 172 52 28 chr15 31979521 31980292 -53715462 + MER21A LTR ERV1 80 921 -10 422 305 82 70 chr15 31980307 31980832 -53714922 - L1MEc LINE L1 -5831 565 35 15901 166 16 17 chr15 31980984 31982102 -53713652 - L1PA11 LINE L1 0 6174 5056 2286 118 0 0 chr15 31982102 31982398 -53713356 - AluSg SINE Alu -14 296 1 15901 166 16 17 chr15 31982398 31985021 -53710733 - L1PA11 LINE L1 -1118 5056 2406 504 101 0 0 chr15 31985024 31985093 -53710661 - Alu SINE Alu -240 69 1 1021 166 42 0 chr15 31985093 31985286 -53710468 + MER57A LTR ERV1 203 403 0 21 0 0 0 chr15 31986333 31986354 -53709400 + AT_rich Low_complexity Low_complexity 1 21 0 1994 135 0 0 chr15 31986400 31986716 -53709038 - AluSg SINE Alu 0 316 1 23 0 0 0 chr15 31986941 31986964 -53708790 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 31987174 31987207 -53708547 + AT_rich Low_complexity Low_complexity 1 33 0 1252 318 162 38 chr15 31988364 31989365 -53706389 - L3 LINE CR1 -16 1561 437 229 143 0 0 chr15 31989492 31989527 -53706227 - U2 snRNA snRNA -150 38 4 1012 167 6 6 chr15 31990001 31990181 -53705573 - MLT1A2 LTR MaLR 0 374 195 897 226 29 39 chr15 31990199 31990478 -53705276 - PABL_B LTR ERV1 -20 647 372 244 293 75 15 chr15 31990503 31990636 -53705118 - PABL_A LTR ERV1 -462 198 58 2846 182 25 20 chr15 31990741 31991385 -53704369 - L1P LINE L1 -1542 4604 3958 241 140 0 0 chr15 31991394 31991444 -53704310 - Alu SINE Alu 0 300 251 1385 107 0 0 chr15 31991444 31991621 -53704133 + AluSx SINE Alu 58 234 -78 1362 175 4 0 chr15 31991641 31991892 -53703862 - L1P LINE L1 -2191 3955 3704 285 309 45 0 chr15 31992211 31992321 -53703433 + L2 LINE L2 3199 3313 0 1979 135 10 0 chr15 31993288 31993576 -53702178 + AluSg SINE Alu 6 296 -14 444 256 58 8 chr15 31993941 31994062 -53701692 - L2 LINE L2 -38 3275 3149 353 270 178 33 chr15 31994630 31994782 -53700972 + MER5A DNA MER1_type 7 180 -9 409 296 37 0 chr15 31995174 31995282 -53700472 - MIR SINE MIR -62 200 89 392 169 14 0 chr15 31996417 31996488 -53699266 - MER94 DNA DNA -62 72 1 455 276 86 31 chr15 31996489 31996652 -53699102 - MIR SINE MIR -79 183 12 317 270 54 9 chr15 31996752 31996863 -53698891 - L3b LINE CR1 -182 1401 1286 240 364 45 0 chr15 31997248 31997358 -53698396 - MIR SINE MIR -111 151 37 497 217 27 65 chr15 31997466 31997650 -53698104 - MER5B DNA MER1_type -1 177 1 435 244 25 8 chr15 31999092 31999211 -53696543 - MLT1A2 LTR MaLR -253 121 1 2247 167 28 9 chr15 31999211 31999641 -53696113 - MLT1A2-int LTR MaLR 0 1735 1298 379 311 32 9 chr15 31999714 31999933 -53695821 + L1ME LINE L1 5544 5767 -354 739 290 79 29 chr15 32000180 32000521 -53695233 + LTR16C LTR ERVL 134 491 0 1805 168 53 16 chr15 32001604 32001979 -53693775 - MLT1B LTR MaLR -1 389 1 23 0 0 0 chr15 32002120 32002143 -53693611 + AT_rich Low_complexity Low_complexity 1 23 0 460 319 86 25 chr15 32003135 32003567 -53692187 + L1M4 LINE L1 3673 4130 -2016 1790 158 10 29 chr15 32004161 32004471 -53691283 - AluJo SINE Alu -8 304 1 1592 166 49 0 chr15 32005184 32005449 -53690305 + AluJb SINE Alu 13 290 -22 24 0 0 0 chr15 32005866 32005890 -53689864 + AT_rich Low_complexity Low_complexity 1 24 0 2384 153 18 44 chr15 32005924 32006428 -53689326 - LTR22B LTR ERVK 0 492 2 393 269 144 10 chr15 32006778 32006986 -53688768 + MLT1J LTR MaLR 274 509 -2 453 301 136 14 chr15 32006988 32007201 -53688553 - MIR SINE MIR -21 241 3 464 346 97 48 chr15 32007532 32007966 -53687788 + L2 LINE L2 2818 3272 0 288 235 78 69 chr15 32010078 32010180 -53685574 - AluJb SINE Alu -199 103 1 186 143 0 0 chr15 32010184 32010219 -53685535 + (TC)n Simple_repeat Simple_repeat 2 36 0 701 52 21 0 chr15 32010222 32010319 -53685435 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1163 203 5 0 chr15 32010335 32010527 -53685227 - AluJb SINE Alu -34 278 86 250 298 67 29 chr15 32010802 32010906 -53684848 - MIR3 SINE MIR -18 190 83 2270 82 7 7 chr15 32011120 32011414 -53684340 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr15 32013876 32013901 -53681853 + (GA)n Simple_repeat Simple_repeat 2 26 0 1012 214 39 75 chr15 32014000 32014388 -53681366 - L1ME2 LINE L1 -28 6136 5763 192 97 0 0 chr15 32015451 32015482 -53680272 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1597 199 3 7 chr15 32015482 32015769 -53679985 - AluJo SINE Alu -26 286 1 979 93 0 0 chr15 32015892 32016021 -53679733 - AluSg/x SINE Alu -9 300 172 11531 99 53 13 chr15 32016124 32017984 -53677770 - MER4-int LTR ERV1 -829 5769 3837 607 141 37 61 chr15 32017966 32018129 -53677625 - MER4-int LTR ERV1 -2905 3693 3535 * 28 48 0 0 chr15 32018366 32018408 -53677346 + AT_rich Low_complexity Low_complexity 1 42 0 683 283 20 20 chr15 32018837 32019035 -53676719 + MIR SINE MIR 8 205 -57 815 112 0 2 chr15 32019710 32019971 -53675783 + AluSx SINE Alu 1 312 0 242 231 0 0 chr15 32020072 32020124 -53675630 - L2 LINE L2 -15 3257 3206 1086 312 69 32 chr15 32020267 32020817 -53674937 - L2 LINE L2 -1 3312 2744 21 36 0 0 chr15 32021305 32021333 -53674421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 32021977 32021997 -53673757 + (T)n Simple_repeat Simple_repeat 1 20 0 250 284 140 72 chr15 32022762 32022972 -53672782 + MER115 DNA AcHobo 302 526 -167 1815 175 101 45 chr15 32022972 32023436 -53672318 - LTR2B LTR ERV1 0 490 1 440 144 19 39 chr15 32023436 32023540 -53672214 + MER115 DNA AcHobo 523 624 -69 1208 241 7 13 chr15 32023546 32023845 -53671909 - L1MD2 LINE L1 -23 6336 6040 1278 162 45 121 chr15 32023872 32024511 -53671243 + MER4C LTR ERV1 2 465 0 31 44 0 0 chr15 32025825 32025870 -53669884 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 115 31 chr15 32025962 32026311 -53669443 - L1ME4a LINE L1 -17 6173 5796 364 330 19 0 chr15 32026676 32026779 -53668975 - L2 LINE L2 -19 3253 3149 201 328 17 0 chr15 32027237 32027295 -53668459 + L2 LINE L2 3189 3247 -25 25 31 0 0 chr15 32028044 32028076 -53667678 + AT_rich Low_complexity Low_complexity 1 32 0 999 160 123 11 chr15 32028681 32029068 -53666686 + LTR54 LTR ERV1 1 504 -6 410 268 73 68 chr15 32029685 32030277 -53665477 - L1ME4a LINE L1 -1101 5114 4525 488 302 166 5 chr15 32030403 32030807 -53664947 - L1ME4a LINE L1 -2096 4119 3651 25 0 0 0 chr15 32031340 32031365 -53664389 + AT_rich Low_complexity Low_complexity 1 25 0 296 250 72 20 chr15 32031474 32031668 -53664086 - L1ME4a LINE L1 -3857 2358 2198 456 330 96 10 chr15 32033038 32033247 -53662507 - MIR SINE MIR -15 247 21 1071 333 70 21 chr15 32034293 32034804 -53660950 + MLT1K LTR MaLR 45 580 -8 50 71 0 0 chr15 32034825 32034924 -53660830 + AT_rich Low_complexity Low_complexity 1 99 0 1541 172 0 76 chr15 32035111 32035413 -53660341 + AluJb SINE Alu 7 285 -27 1599 264 72 38 chr15 32036246 32036829 -53658925 - MER67B LTR ERV1 0 661 59 2182 108 7 3 chr15 32036992 32037288 -53658466 + AluSg SINE Alu 1 297 -13 228 235 39 0 chr15 32037510 32037561 -53658193 - L2 LINE L2 -6 3307 3255 2089 144 39 14 chr15 32037825 32038180 -53657574 + MER47A DNA MER2_type 2 365 -1 237 250 36 129 chr15 32038389 32038529 -53657225 + MIR SINE MIR 68 194 -68 2150 114 0 29 chr15 32039166 32039474 -53656280 - AluSq SINE Alu -14 299 1 228 336 92 38 chr15 32039649 32039780 -53655974 + MLT1K LTR MaLR 90 227 -361 2077 243 120 31 chr15 32039780 32040854 -53654900 - L1MEc LINE L1 -2751 3464 2295 972 286 57 20 chr15 32040895 32041402 -53654352 - L1MEc LINE L1 -4021 2375 1850 681 192 196 14 chr15 32041720 32041939 -53653815 - L1MEc LINE L1 -4544 1852 1594 1543 178 8 4 chr15 32041943 32042201 -53653553 + AluJo SINE Alu 2 260 -52 315 0 0 0 chr15 32042941 32042976 -53652778 + (CA)n Simple_repeat Simple_repeat 2 36 0 2969 140 16 6 chr15 32043511 32044012 -53651742 + L1PA16 LINE L1 5652 6157 -9 279 0 0 0 chr15 32044550 32044581 -53651173 + (TG)n Simple_repeat Simple_repeat 1 31 0 1997 141 30 0 chr15 32044804 32045103 -53650651 - AluSx SINE Alu 0 312 5 290 331 59 29 chr15 32045445 32045581 -53650173 - L2 LINE L2 -10 3262 3123 4651 144 24 1 chr15 32046342 32047164 -53648590 - L1MA4 LINE L1 -5 6295 5455 273 267 242 0 chr15 32047826 32047946 -53647808 + MIR SINE MIR 33 181 -81 201 154 0 0 chr15 32048651 32048690 -53647064 + (TG)n Simple_repeat Simple_repeat 2 40 0 221 318 142 34 chr15 32049166 32049342 -53646412 + MIR SINE MIR 9 203 -59 679 297 57 9 chr15 32051057 32051269 -53644485 + MIR SINE MIR 41 262 0 334 26 0 0 chr15 32052224 32052263 -53643491 - MADE1 DNA Mariner -41 39 1 905 239 101 80 chr15 32052845 32053204 -53642550 - L1MC5 LINE L1 -50 7911 7530 3862 24 0 9 chr15 32053204 32053693 -53642061 - L1PA3 LINE L1 0 6155 5703 905 239 101 80 chr15 32053693 32054018 -53641736 - L1MC5 LINE L1 -431 7530 7213 201 39 0 0 chr15 32055006 32055032 -53640722 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 228 191 0 0 chr15 32056587 32056629 -53639125 + Charlie8 DNA MER1_type 223 264 -2153 1621 170 4 11 chr15 32057112 32057383 -53638371 + AluJo SINE Alu 35 303 -9 2225 181 35 27 chr15 32057405 32057724 -53638030 - L1MB2 LINE L1 -19 6152 5826 1902 127 6 62 chr15 32057724 32058046 -53637708 - AluSq SINE Alu -9 304 1 2225 181 35 27 chr15 32058046 32058213 -53637541 - L1PA11 LINE L1 -345 5826 5662 1920 118 38 13 chr15 32058213 32058526 -53637228 + L1PA11 LINE L1 5848 6169 -5 1808 156 18 9 chr15 32058530 32058856 -53636898 - L1MB2 LINE L1 -511 5660 5332 1287 233 41 6 chr15 32058863 32059206 -53636548 + L1 LINE L1 4878 5232 -914 237 318 0 12 chr15 32060756 32060841 -53634913 - MIR SINE MIR -126 136 53 741 288 36 24 chr15 32060981 32061231 -53634523 - MIR SINE MIR -5 257 5 23 33 0 0 chr15 32061558 32061588 -53634166 + AT_rich Low_complexity Low_complexity 1 30 0 265 249 64 98 chr15 32061670 32061843 -53633911 + MIR SINE MIR 46 212 -50 340 314 113 8 chr15 32062065 32062189 -53633565 - L2 LINE L2 0 3272 3136 2114 210 10 0 chr15 32062435 32062821 -53632933 - MLT1F1 LTR MaLR -53 514 125 195 42 0 0 chr15 32064131 32064155 -53631599 + (TC)n Simple_repeat Simple_repeat 1 24 0 1228 91 42 0 chr15 32064155 32064320 -53631434 - AluSg/x SINE Alu -11 301 130 21 0 0 0 chr15 32069912 32069933 -53625821 + AT_rich Low_complexity Low_complexity 1 21 0 1453 86 5 0 chr15 32070421 32070619 -53625135 + L1PA12 LINE L1 5966 6164 -4 328 329 45 26 chr15 32071676 32071831 -53623923 - MIR3 SINE MIR -8 200 43 1563 186 7 28 chr15 32071902 32072187 -53623567 - AluJo SINE Alu -33 279 1 811 207 44 16 chr15 32072401 32072672 -53623082 + L1MC2 LINE L1 5916 6155 -189 895 210 73 5 chr15 32072681 32072900 -53622854 + MER39 LTR ERV1 19 252 -455 2105 140 31 3 chr15 32072933 32073291 -53622463 + MER39 LTR ERV1 340 707 0 6686 177 59 22 chr15 32073301 32074812 -53620942 + L1MC3 LINE L1 6212 7777 -8 30685 103 13 55 chr15 32075129 32077692 -53618062 - L1PA7 LINE L1 -2 6152 3485 2329 103 0 0 chr15 32077692 32077992 -53617762 - AluY SINE Alu -11 300 1 30685 103 13 55 chr15 32077992 32081849 -53613905 - L1PA7 LINE L1 -2669 3485 9 260 234 9 27 chr15 32082357 32082468 -53613286 - L1MC5 LINE L1 -46 7915 7807 2154 109 61 0 chr15 32082633 32082926 -53612828 + AluSx SINE Alu 1 311 -1 28 48 0 0 chr15 32083032 32083074 -53612680 + AT_rich Low_complexity Low_complexity 1 42 0 330 267 51 56 chr15 32084358 32084553 -53611201 + MLT1J LTR MaLR 293 486 -25 206 229 16 82 chr15 32084563 32084624 -53611130 - MIR3 SINE MIR -35 173 117 * 633 255 82 25 chr15 32084620 32084816 -53610938 + L2 LINE L2 3106 3312 -1 677 227 0 8 chr15 32084998 32085130 -53610624 - FLAM_A SINE Alu -2 131 1 258 302 38 9 chr15 32085298 32085404 -53610350 - MER103 DNA DNA -45 121 13 270 81 0 0 chr15 32085749 32085786 -53609968 + (CAT)n Simple_repeat Simple_repeat 1 37 0 252 130 0 0 chr15 32085957 32086003 -53609751 + (CA)n Simple_repeat Simple_repeat 2 47 0 1273 167 46 49 chr15 32086190 32086519 -53609235 - L1MA9 LINE L1 -3 6309 5982 461 282 245 28 chr15 32086521 32086844 -53608910 + L2 LINE L2 2895 3287 -26 1761 75 83 0 chr15 32087143 32087384 -53608370 - AluSp SINE Alu -22 291 31 21 36 0 0 chr15 32087744 32087772 -53607982 + AT_rich Low_complexity Low_complexity 1 28 0 282 284 29 0 chr15 32087884 32087986 -53607768 - Charlie8 DNA MER1_type -1926 491 387 636 244 110 34 chr15 32088708 32088766 -53606988 - L1ME4a LINE L1 -262 5859 5807 2249 97 0 22 chr15 32088766 32089077 -53606677 - AluY SINE Alu -7 304 1 636 244 110 34 chr15 32089077 32089346 -53606408 - L1ME4a LINE L1 -314 5807 5507 234 334 194 22 chr15 32089390 32089755 -53605999 + L2 LINE L2 1311 1738 -1576 698 247 91 5 chr15 32092290 32092509 -53603245 + MIR SINE MIR 15 252 -10 3489 133 35 68 chr15 32092669 32092951 -53602803 + L1MA9 LINE L1 5555 5845 -467 297 0 0 0 chr15 32092951 32092984 -53602770 + (CA)n Simple_repeat Simple_repeat 2 34 0 3489 133 35 68 chr15 32092984 32093435 -53602319 + L1MA9 LINE L1 5845 6264 -48 1716 156 58 0 chr15 32093603 32093879 -53601875 + AluJb SINE Alu 1 292 -20 1855 118 62 54 chr15 32094251 32094623 -53601131 - THE1C LTR MaLR 0 375 1 27 29 0 0 chr15 32094918 32094952 -53600802 + AT_rich Low_complexity Low_complexity 1 34 0 420 272 78 42 chr15 32095077 32095268 -53600486 + MIR SINE MIR 65 262 0 397 301 19 0 chr15 32095303 32095406 -53600348 + L2 LINE L2 3168 3272 0 1453 180 88 0 chr15 32096025 32096124 -53599630 + AluJb SINE Alu 18 107 -205 227 54 27 0 chr15 32096124 32096161 -53599593 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 1453 180 88 0 chr15 32096161 32096322 -53599432 + AluJb SINE Alu 107 301 -11 256 149 45 45 chr15 32096807 32096874 -53598880 - L1MC/D LINE L1 -1908 5900 5834 193 264 57 0 chr15 32096958 32097011 -53598743 - MIR3 SINE MIR -52 156 101 1783 84 26 0 chr15 32097023 32097250 -53598504 + AluSc SINE Alu 1 233 -76 3423 110 45 23 chr15 32097848 32098422 -53597332 + LTR18B LTR ERVL 1 587 -27 8733 195 37 10 chr15 32098457 32100746 -53595008 + HERVL18 LTR ERVL 4 2452 -3595 1448 161 4 4 chr15 32100745 32100987 -53594767 + HERVL18 LTR ERVL 2720 2961 -3086 * 2970 207 4 2 chr15 32101023 32101573 -53594181 + HERVL18 LTR ERVL 2941 3491 -2556 3177 113 64 23 chr15 32101761 32102325 -53593429 + LTR18B LTR ERVL 1 587 -27 319 304 161 19 chr15 32104158 32104319 -53591435 + MER5A DNA MER1_type 1 184 -5 356 331 27 49 chr15 32104321 32104505 -53591249 - MER5A DNA MER1_type -9 180 1 530 297 138 22 chr15 32106662 32106894 -53588860 + MIR SINE MIR 1 259 -3 26 0 0 0 chr15 32107456 32107482 -53588272 + AT_rich Low_complexity Low_complexity 1 26 0 289 300 62 12 chr15 32107659 32107819 -53587935 - L1ME LINE L1 -303 5818 5651 1819 139 80 0 chr15 32107844 32108131 -53587623 + AluSq SINE Alu 1 310 -3 483 329 58 75 chr15 32108283 32108642 -53587112 - L2 LINE L2 0 3272 2920 278 341 0 0 chr15 32109719 32109804 -53585950 + MIR SINE MIR 48 132 -130 272 352 62 31 chr15 32109963 32110091 -53585663 - MIR3 SINE MIR -62 146 15 321 292 0 0 chr15 32110830 32110902 -53584852 + L2 LINE L2 3237 3308 -5 2198 107 13 13 chr15 32111477 32111786 -53583968 + AluSx SINE Alu 1 309 -3 433 325 15 45 chr15 32111805 32112005 -53583749 + MIR SINE MIR 23 216 -46 207 323 182 20 chr15 32113833 32113932 -53581822 + MIR SINE MIR 30 144 -64 184 336 100 74 chr15 32114068 32114407 -53581347 - L2 LINE L2 -15 3257 2910 907 247 57 4 chr15 32114593 32114820 -53580934 - MIR SINE MIR -22 240 2 497 297 174 27 chr15 32114843 32115257 -53580497 - L2 LINE L2 -618 2696 2222 3723 102 2 4 chr15 32115611 32116123 -53579631 - MER9 LTR ERVK 0 511 1 2710 94 6 0 chr15 32116553 32116915 -53578839 - THE1B LTR MaLR 0 364 1 830 256 177 67 chr15 32117483 32118019 -53577735 - MLT1H1 LTR MaLR 0 555 1 264 234 195 0 chr15 32118311 32118388 -53577366 - L2 LINE L2 -32 3281 3190 2195 113 0 0 chr15 32118688 32119021 -53576733 - AluSx SINE Alu 0 333 1 2181 93 7 0 chr15 32119583 32119863 -53575891 + AluSc SINE Alu 3 284 -25 261 0 0 0 chr15 32119867 32119896 -53575858 + (CAA)n Simple_repeat Simple_repeat 2 30 0 644 346 77 35 chr15 32120114 32120749 -53575005 + L2 LINE L2 1990 2651 -663 207 100 0 0 chr15 32120895 32120925 -53574829 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 248 459 4 0 chr15 32121124 32121370 -53574384 + L2 LINE L2 2805 3051 -221 2221 143 29 61 chr15 32121416 32121858 -53573896 - MSTA LTR MaLR 0 428 1 209 306 65 37 chr15 32122153 32122177 -53573577 - MIR SINE MIR -80 182 160 1698 215 5 11 chr15 32122177 32122544 -53573210 - MLT1A1 LTR MaLR 0 365 1 209 306 65 37 chr15 32122544 32122627 -53573127 - MIR SINE MIR -102 160 72 17254 179 21 110 chr15 32123077 32127341 -53568413 + L1P3 LINE L1 3 4185 -2276 2435 112 89 63 chr15 32127341 32127814 -53567940 - LTR21A LTR ERV1 -19 486 2 17254 179 21 110 chr15 32127814 32128695 -53567059 + L1P3 LINE L1 4185 5142 -1319 981 119 0 0 chr15 32128796 32128930 -53566824 - AluSq/x SINE Alu -178 134 1 301 304 132 53 chr15 32128973 32129276 -53566478 - L1 LINE L1 -1059 5087 4761 23 0 0 0 chr15 32129548 32129571 -53566183 + AT_rich Low_complexity Low_complexity 1 23 0 235 211 13 26 chr15 32129613 32129689 -53566065 - L1M4 LINE L1 -1097 5049 4975 1138 243 36 45 chr15 32129703 32130123 -53565631 - L1M4 LINE L1 -3621 2525 2110 31 0 0 0 chr15 32130178 32130209 -53565545 + AT_rich Low_complexity Low_complexity 1 31 0 1859 142 0 9 chr15 32130216 32130534 -53565220 - L1PA13 LINE L1 0 6163 5849 21 36 0 0 chr15 32130760 32130788 -53564966 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 32130944 32130972 -53564782 + AT_rich Low_complexity Low_complexity 1 28 0 270 321 127 0 chr15 32133664 32133798 -53561956 + MIR3 SINE MIR 55 205 -3 26 0 0 0 chr15 32134532 32134558 -53561196 + AT_rich Low_complexity Low_complexity 1 26 0 325 338 94 38 chr15 32134788 32135128 -53560626 + L2 LINE L2 2429 2787 -527 343 322 14 27 chr15 32135431 32135577 -53560177 + MIR SINE MIR 82 225 -37 2723 57 3 19 chr15 32135908 32136277 -53559477 - L1PA8A LINE L1 0 6131 5769 594 51 0 0 chr15 32136304 32136382 -53559372 - L1PA3 LINE L1 -3 6152 6075 209 241 37 0 chr15 32136383 32136437 -53559317 + (TATG)n Simple_repeat Simple_repeat 1 56 0 400 324 0 0 chr15 32139751 32139856 -53555898 + L2 LINE L2 3168 3272 0 22 35 0 0 chr15 32140344 32140373 -53555381 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr15 32141450 32141492 -53554262 + AT_rich Low_complexity Low_complexity 1 42 0 644 329 25 25 chr15 32141780 32142063 -53553691 - HERV16 LTR ERVL -774 4990 4708 662 330 34 0 chr15 32142291 32142500 -53553254 - HERV16 LTR ERVL -1332 4432 4217 659 321 48 11 chr15 32142545 32142785 -53552969 - HERV16 LTR ERVL -3433 1563 1357 2119 326 40 25 chr15 32143000 32144009 -53551745 - HERV16 LTR ERVL -3897 1099 76 525 322 81 0 chr15 32144141 32144290 -53551464 - LTR16A LTR ERVL -114 336 176 23 0 0 0 chr15 32145347 32145370 -53550384 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr15 32145739 32145785 -53549969 + AT_rich Low_complexity Low_complexity 1 46 0 201 349 64 60 chr15 32145799 32146080 -53549674 - L2 LINE L2 -705 2609 2328 4280 243 115 34 chr15 32147430 32148737 -53547017 - L1ME2 LINE L1 -9 6155 4955 1901 165 7 0 chr15 32148737 32149046 -53546708 - AluJb SINE Alu -1 311 1 4280 243 115 34 chr15 32149046 32150964 -53544790 - L1ME2 LINE L1 -1209 4955 2666 181 222 0 0 chr15 32151226 32151262 -53544492 + MIR SINE MIR 78 113 -149 564 311 99 9 chr15 32152559 32152781 -53542973 - MIR SINE MIR 0 262 21 2375 78 3 3 chr15 32152948 32153255 -53542499 + AluY SINE Alu 1 307 -4 223 263 76 93 chr15 32153288 32153406 -53542348 + MIR SINE MIR 90 205 -57 271 350 86 7 chr15 32153834 32153974 -53541780 + MIR3 SINE MIR 3 153 -55 3379 105 28 42 chr15 32154482 32154674 -53541080 - L1MA2 LINE L1 -4 6300 6107 2180 86 4 0 chr15 32154674 32154995 -53540759 + AluY SINE Alu 1 322 0 3379 105 28 42 chr15 32154995 32155370 -53540384 - L1MA2 LINE L1 -197 6107 5739 3354 123 6 2 chr15 32155470 32156109 -53539645 - L1MA2 LINE L1 -558 5746 5105 727 279 73 9 chr15 32156386 32156619 -53539135 + MIR SINE MIR 3 250 -12 192 259 92 97 chr15 32157092 32157277 -53538477 + MIR SINE MIR 79 262 0 3009 109 2 2 chr15 32158386 32158825 -53536929 + L1PA10 LINE L1 5717 6155 -13 387 295 85 30 chr15 32159302 32159502 -53536252 + MIR SINE MIR 50 260 -2 233 305 166 13 chr15 32159904 32160055 -53535699 + MIR SINE MIR 78 251 -11 785 288 12 33 chr15 32160428 32160587 -53535167 - MIR SINE MIR -2 260 106 1829 143 4 0 chr15 32160587 32160859 -53534895 - AluSc SINE Alu 0 309 37 785 288 12 33 chr15 32160859 32160942 -53534812 - MIR SINE MIR -156 106 23 183 367 60 33 chr15 32161541 32161691 -53534063 - L2 LINE L2 -338 2975 2822 196 308 0 0 chr15 32161770 32161822 -53533932 - L2 LINE L2 -672 2642 2591 270 0 0 0 chr15 32168537 32168567 -53527187 + (TG)n Simple_repeat Simple_repeat 1 30 0 185 271 107 36 chr15 32169897 32170037 -53525717 + L2 LINE L2 3161 3310 -3 511 283 46 6 chr15 32170184 32170357 -53525397 - MIR SINE MIR -26 236 57 234 213 21 0 chr15 32170931 32170978 -53524776 + MER5B DNA MER1_type 2 49 -129 2280 103 0 31 chr15 32171402 32171722 -53524032 - AluSg SINE Alu 0 310 1 4243 168 22 27 chr15 32172195 32172838 -53522916 - L1MA7 LINE L1 -4 6287 5648 1741 151 0 108 chr15 32172838 32173228 -53522526 + MER7A DNA MER2_type 1 346 0 4243 168 22 27 chr15 32173228 32173448 -53522306 - L1MA7 LINE L1 -643 5648 5428 785 174 48 18 chr15 32173459 32173626 -53522128 - AluJo SINE Alu -20 292 121 1426 192 20 9 chr15 32173626 32173945 -53521809 - L1MA7 LINE L1 -744 5402 5099 306 327 96 45 chr15 32174232 32174431 -53521323 - MIR SINE MIR -34 228 20 2335 62 13 3 chr15 32175777 32176084 -53519670 + AluY SINE Alu 2 311 0 331 283 56 56 chr15 32176104 32176302 -53519452 + MARNA DNA Mariner 280 477 -109 556 297 89 38 chr15 32176499 32176735 -53519019 - MIR SINE MIR 0 262 15 235 294 165 18 chr15 32177641 32177750 -53518004 - MER5A DNA MER1_type -1 188 64 272 288 34 51 chr15 32177799 32177917 -53517837 + L2 LINE L2 2171 2286 -1028 207 207 17 0 chr15 32177919 32177977 -53517777 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 633 311 73 76 chr15 32177979 32178307 -53517447 - L2 LINE L2 -49 3223 2897 205 196 0 22 chr15 32178310 32178356 -53517398 + A-rich Low_complexity Low_complexity 5 49 0 2101 128 0 3 chr15 32178511 32178809 -53516945 - AluSx SINE Alu -15 297 1 1206 64 0 19 chr15 32179823 32179980 -53515774 - AluY SINE Alu -9 302 149 294 200 29 14 chr15 32180000 32180070 -53515684 + MIR SINE MIR 91 161 -101 414 314 53 53 chr15 32181071 32181374 -53514380 + LTR16C LTR ERVL 188 490 -1 187 283 53 53 chr15 32181376 32181489 -53514265 - MIR SINE MIR -97 165 53 977 187 80 126 chr15 32181744 32182118 -53513636 - MLT1A1 LTR MaLR -8 357 1 1889 62 0 0 chr15 32182401 32182625 -53513129 - AluY SINE Alu -51 260 37 339 293 55 55 chr15 32183728 32183892 -53511862 - MIR3 SINE MIR -3 205 42 2337 93 0 3 chr15 32183951 32184283 -53511471 + L1PB1 LINE L1 5821 6151 0 264 313 99 30 chr15 32184623 32184754 -53511000 - MER5A DNA MER1_type 0 189 50 252 255 0 20 chr15 32184792 32184843 -53510911 - MIR3 SINE MIR -48 160 111 279 289 0 11 chr15 32185211 32185301 -53510453 + LTR33 LTR ERVL 46 134 -387 230 330 184 0 chr15 32186135 32186347 -53509407 + L1MC/D LINE L1 5544 5794 -2014 419 213 43 0 chr15 32187408 32187502 -53508252 + MER20 DNA MER1_type 89 186 -33 278 256 24 37 chr15 32187507 32187589 -53508165 - MIR3 SINE MIR -41 167 87 194 289 19 0 chr15 32187947 32187999 -53507755 + MIR3 SINE MIR 153 205 -3 399 306 38 19 chr15 32188475 32188632 -53507122 + MIR SINE MIR 84 243 -19 25 0 0 0 chr15 32188700 32188725 -53507029 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr15 32188974 32189019 -53506735 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr15 32189135 32189162 -53506592 + AT_rich Low_complexity Low_complexity 1 27 0 227 111 0 0 chr15 32189219 32189264 -53506490 + LTR66 LTR ERVL 394 438 -172 1758 153 13 36 chr15 32189264 32189572 -53506182 - AluSx SINE Alu -11 301 1 529 295 4 97 chr15 32190683 32190920 -53504834 + L2 LINE L2 2101 2315 -999 560 236 104 91 chr15 32190921 32191306 -53504448 + L2 LINE L2 2536 2925 -389 328 217 52 61 chr15 32191313 32191428 -53504326 - LTR16C LTR ERVL -11 480 367 586 189 151 19 chr15 32191496 32191655 -53504099 + MER5A DNA MER1_type 9 188 -1 586 243 82 29 chr15 32191655 32191861 -53503893 - LTR16C LTR ERVL -196 295 79 701 287 43 55 chr15 32191921 32192249 -53503505 + L2 LINE L2 2923 3246 -67 314 350 118 43 chr15 32192286 32192677 -53503077 - L1MC4a LINE L1 -1872 5936 5517 886 236 66 12 chr15 32192712 32192954 -53502800 + MIR SINE MIR 6 260 -2 496 186 157 2 chr15 32193142 32193317 -53502437 + MER46A DNA MER2_type 1 235 -1 310 360 0 0 chr15 32193515 32193615 -53502139 + L1MC4a LINE L1 6441 6540 -1268 2450 81 0 0 chr15 32193711 32194020 -53501734 + AluY SINE Alu 1 309 -2 3312 182 20 46 chr15 32195049 32195812 -53499942 - L1MB7 LINE L1 -11 6173 5431 483 248 0 0 chr15 32195831 32195944 -53499810 - L1MA9 LINE L1 -38 6274 6162 * 2288 179 42 11 chr15 32195938 32196493 -53499261 - L1MB7 LINE L1 -744 5434 4854 1092 232 21 21 chr15 32196853 32197189 -53498565 - L1MC4 LINE L1 -732 7310 6975 1276 269 131 12 chr15 32197190 32197755 -53497999 - L1MC4 LINE L1 -1923 5885 5254 239 61 122 0 chr15 32197797 32197846 -53497908 - L1MB4 LINE L1 0 6180 6126 2341 145 57 15 chr15 32198385 32198862 -53496892 - L1MB4 LINE L1 -6 6174 5678 2179 88 3 7 chr15 32201116 32201410 -53494344 - AluSx SINE Alu -19 293 1 414 282 77 38 chr15 32202144 32202646 -53493108 - L1P LINE L1 -871 5275 4762 279 0 0 0 chr15 32202776 32202807 -53492947 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6682 8 0 0 chr15 32202902 32203652 -53492102 - L1PA2 LINE L1 -2 6153 5404 243 51 26 26 chr15 32204057 32204096 -53491658 - MADE1 DNA Mariner -41 39 1 1484 151 3 120 chr15 32204147 32204471 -53491283 - AluSx SINE Alu -26 286 1 4823 97 35 17 chr15 32204623 32205376 -53490378 - L1MA3 LINE L1 0 6305 5540 220 321 92 9 chr15 32205459 32205568 -53490186 + L2 LINE L2 3136 3253 -19 203 175 0 0 chr15 32205933 32205973 -53489781 + T-rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 32206567 32206596 -53489158 + AT_rich Low_complexity Low_complexity 1 29 0 34833 38 0 1 chr15 32207206 32212271 -53483483 + L1PA4 LINE L1 1094 6155 0 624 266 11 11 chr15 32213034 32213222 -53482532 + MER5A DNA MER1_type 1 188 -1 523 305 138 0 chr15 32215905 32216072 -53479682 - MLT1J2 LTR MaLR -21 429 240 472 234 48 8 chr15 32216125 32216249 -53479505 - MLT1J2 LTR MaLR -319 131 3 355 115 16 0 chr15 32218321 32218382 -53477372 - MER53 DNA DNA -3 186 125 413 316 79 7 chr15 32218657 32218809 -53476945 - MIR3 SINE MIR -41 167 5 990 226 15 5 chr15 32218809 32219013 -53476741 + MER58A DNA MER1_type 19 224 0 321 309 143 17 chr15 32220334 32220509 -53475245 - MIR SINE MIR -43 219 23 239 348 30 49 chr15 32220612 32220776 -53474978 - L2 LINE L2 -10 3262 3102 224 354 46 15 chr15 32221191 32221321 -53474433 - MIR3 SINE MIR -73 135 2 643 291 114 0 chr15 32221353 32221652 -53474102 - MER46C DNA MER2_type -1 337 5 236 280 208 0 chr15 32221678 32221803 -53473951 + MIR SINE MIR 112 262 0 1358 212 67 3 chr15 32221975 32222291 -53473463 + MER58B DNA MER1_type 6 341 0 8875 92 8 2 chr15 32223291 32225330 -53470424 - L1PA7 LINE L1 -1 6153 4106 328 143 0 143 chr15 32225563 32225611 -53470143 - MADE1 DNA Mariner -4 76 43 1978 48 0 183 chr15 32225611 32225988 -53469766 + AluY SINE Alu 1 308 -3 328 143 0 143 chr15 32225988 32226023 -53469731 - MADE1 DNA Mariner -37 43 5 467 261 140 19 chr15 32226309 32226466 -53469288 - MIR3 SINE MIR -25 183 8 3183 14 0 0 chr15 32226521 32226885 -53468869 - L1PA2 LINE L1 -4 6151 5788 234 368 35 9 chr15 32227387 32227501 -53468253 - MIR SINE MIR -62 146 30 2092 122 26 0 chr15 32227776 32228080 -53467674 - AluSx SINE Alu 0 312 1 12530 229 26 13 chr15 32228244 32232884 -53462870 - L1PB4 LINE L1 -11 6848 2148 883 259 18 26 chr15 32232900 32233395 -53462359 - L1PB4 LINE L1 -4912 1937 1355 230 301 0 0 chr15 32233415 32233488 -53462266 - L1PB4 LINE L1 -5304 1545 1473 369 338 102 47 chr15 32234313 32234656 -53461098 - L1PB4 LINE L1 -6431 419 58 322 323 45 76 chr15 32234916 32235139 -53460615 + MIR SINE MIR 37 252 -10 22 70 0 0 chr15 32235392 32235435 -53460319 + AT_rich Low_complexity Low_complexity 1 43 0 526 190 10 0 chr15 32236024 32236124 -53459630 - AluJo SINE Alu -178 134 34 1427 200 64 0 chr15 32236346 32236676 -53459078 - L1MA5 LINE L1 0 6300 5950 2104 118 10 3 chr15 32237139 32237444 -53458310 - AluSg SINE Alu -3 307 1 665 336 40 8 chr15 32237645 32237898 -53457856 - L3 LINE CR1 -5 1572 1312 191 333 69 0 chr15 32239051 32239153 -53456601 + MIR SINE MIR 134 242 -20 551 288 128 55 chr15 32240951 32241444 -53454310 - L1 LINE L1 -1491 4655 4127 323 263 207 20 chr15 32241981 32242179 -53453575 - MIR SINE MIR 0 262 28 788 268 49 100 chr15 32243491 32243979 -53451775 + LTR16B LTR ERVL 1 463 -1 465 233 185 0 chr15 32245124 32245270 -53450484 + MER5A DNA MER1_type 16 188 -1 302 253 46 0 chr15 32246027 32246114 -53449640 + L2 LINE L2 1747 1837 -1477 2045 124 0 0 chr15 32247746 32248052 -53447702 - AluSx SINE Alu 0 306 1 1448 316 175 27 chr15 32248844 32249390 -53446364 + L2 LINE L2 1076 1540 -1774 2122 117 3 35 chr15 32249390 32249707 -53446047 + AluSq SINE Alu 1 307 -6 1448 316 175 27 chr15 32249707 32250272 -53445482 + L2 LINE L2 1540 2352 -962 200 266 128 75 chr15 32250296 32250484 -53445270 + L2 LINE L2 2497 2694 -620 238 136 0 119 chr15 32250496 32250555 -53445199 - L1ME3 LINE L1 -4 6158 6107 358 262 173 47 chr15 32250582 32250796 -53444958 - L1ME LINE L1 -5151 919 679 209 309 24 71 chr15 32250806 32250890 -53444864 - MIR3 SINE MIR -125 83 4 2104 115 0 17 chr15 32251166 32251461 -53444293 - AluSg SINE Alu -20 290 1 218 250 0 16 chr15 32252749 32252813 -53442941 + (CA)n Simple_repeat Simple_repeat 2 64 0 2282 91 3 7 chr15 32253312 32253620 -53442134 - AluSc SINE Alu -2 307 1 306 301 173 0 chr15 32253717 32253873 -53441881 - HAL1 LINE L1 -643 1864 1682 556 332 79 53 chr15 32254002 32254914 -53440840 - HAL1 LINE L1 -1245 1262 327 2380 65 0 3 chr15 32257771 32258064 -53437690 - AluY SINE Alu -19 292 1 483 130 0 0 chr15 32258831 32258908 -53436846 + (TCCCC)n Simple_repeat Simple_repeat 2 78 0 2069 146 13 0 chr15 32258911 32259219 -53436535 - AluSx SINE Alu 0 312 1 1999 144 0 10 chr15 32259573 32259872 -53435882 + AluSx SINE Alu 1 296 -16 2579 190 29 59 chr15 32261219 32261850 -53433904 - LTR9 LTR ERV1 0 612 1 224 229 21 0 chr15 32262267 32262315 -53433439 + GA-rich Low_complexity Low_complexity 2 50 0 2021 116 0 0 chr15 32262627 32262903 -53432851 + AluY SINE Alu 23 298 -13 335 317 98 40 chr15 32263495 32264102 -53431652 - L1MC4a LINE L1 -273 5889 5288 24 32 0 0 chr15 32264147 32264178 -53431576 + AT_rich Low_complexity Low_complexity 1 31 0 238 200 0 0 chr15 32264487 32264532 -53431222 + Tigger1 DNA MER2_type 1 45 -2373 697 111 16 24 chr15 32264551 32264677 -53431077 - L1MA4 LINE L1 0 6300 6176 26 0 0 0 chr15 32264677 32264703 -53431051 + AT_rich Low_complexity Low_complexity 1 26 0 224 330 117 67 chr15 32264789 32265028 -53430726 - L2 LINE L2 0 3272 3022 300 204 43 0 chr15 32265057 32265150 -53430604 - L1MB3 LINE L1 0 6183 6087 5619 191 26 33 chr15 32265198 32266173 -53429581 - L1MA4 LINE L1 -7 6293 5312 198 71 0 0 chr15 32266173 32266201 -53429553 + (TTG)n Simple_repeat Simple_repeat 1 28 0 5619 191 26 33 chr15 32266201 32266661 -53429093 - L1MA4 LINE L1 -988 5312 4850 1628 182 7 4 chr15 32266661 32266941 -53428813 - AluJb SINE Alu -31 281 1 5619 191 26 33 chr15 32266941 32268243 -53427511 - L1MA4 LINE L1 -1450 4850 3472 13533 145 42 8 chr15 32268261 32270557 -53425197 + Tigger1 DNA MER2_type 45 2418 0 303 310 53 42 chr15 32270850 32271282 -53424472 - L1M4 LINE L1 -1643 4503 4067 2459 268 55 7 chr15 32271539 32272356 -53423398 - L1ME2 LINE L1 -10 6154 5299 275 218 23 11 chr15 32272396 32272483 -53423271 + (TA)n Simple_repeat Simple_repeat 2 89 0 2994 242 68 29 chr15 32272626 32274243 -53421511 - L1MD2 LINE L1 -2 6751 5013 1886 154 0 3 chr15 32274243 32274528 -53421226 + AluSg SINE Alu 1 284 -26 2994 242 68 29 chr15 32274528 32274687 -53421067 - L1MD2 LINE L1 -1740 5013 4862 737 223 91 4 chr15 32274703 32274968 -53420786 - L1MD2 LINE L1 -3591 2949 2662 1232 209 91 11 chr15 32275019 32275597 -53420157 + L1MDa LINE L1 2326 2948 -3592 6593 72 8 2 chr15 32275611 32276761 -53418993 + L1PA7 LINE L1 4982 6136 -18 284 76 86 9 chr15 32276772 32276877 -53418877 + (TA)n Simple_repeat Simple_repeat 2 114 0 2104 215 21 0 chr15 32276911 32277376 -53418378 + L1 LINE L1 4070 4544 -1602 516 266 54 10 chr15 32277390 32277593 -53418161 - L1MD2 LINE L1 -5240 1300 1089 1278 251 60 102 chr15 32277729 32278231 -53417523 - L1MD2 LINE L1 -5454 1086 606 647 224 68 0 chr15 32278229 32278376 -53417378 - L1MD2 LINE L1 -6365 175 19 * 977 270 106 82 chr15 32278378 32279312 -53416442 - L1M4 LINE L1 -2293 3853 2898 2528 53 0 0 chr15 32279482 32279786 -53415968 - AluY SINE Alu -7 304 1 292 320 23 39 chr15 32280091 32280219 -53415535 + L2 LINE L2 3147 3272 0 1245 215 23 4 chr15 32280579 32280835 -53414919 + Tigger7 DNA MER2_type 1 261 -472 444 235 0 10 chr15 32280840 32280938 -53414816 + Tigger7 DNA MER2_type 2394 2490 -1 2274 87 7 13 chr15 32281255 32281564 -53414190 - AluY SINE Alu -4 307 1 251 239 71 71 chr15 32282336 32282449 -53413305 - MIR3 SINE MIR -10 198 86 307 255 20 10 chr15 32282937 32283039 -53412715 + (TA)n Simple_repeat Simple_repeat 1 103 0 8847 194 53 99 chr15 32283101 32283244 -53412510 - L1MA9 LINE L1 0 6312 6164 225 0 0 0 chr15 32283244 32283269 -53412485 + (TG)n Simple_repeat Simple_repeat 1 25 0 8847 194 53 99 chr15 32283269 32283615 -53412139 - L1MA9 LINE L1 -148 6164 5804 225 65 0 0 chr15 32283615 32283646 -53412108 + (TG)n Simple_repeat Simple_repeat 2 32 0 8847 194 53 99 chr15 32283646 32283693 -53412061 - L1MA9 LINE L1 -508 5804 5756 1495 53 0 80 chr15 32283693 32283919 -53411835 - AluY SINE Alu -5 306 99 8847 194 53 99 chr15 32283919 32285387 -53410367 - L1MA9 LINE L1 -556 5756 4222 1090 189 5 24 chr15 32285387 32285593 -53410161 - AluJb SINE Alu -20 292 91 8847 194 53 99 chr15 32285593 32286087 -53409667 - L1MA9 LINE L1 -2090 4222 3707 1388 174 44 34 chr15 32286087 32286381 -53409373 - AluJb SINE Alu -15 297 1 8847 194 53 99 chr15 32286381 32287527 -53408227 - L1MA9 LINE L1 -2605 3707 2651 536 324 92 36 chr15 32287626 32287942 -53407812 - L1ME4a LINE L1 -122 5999 5643 1489 214 93 38 chr15 32287942 32288195 -53407559 - MLT1C LTR MaLR 0 467 178 2372 86 3 0 chr15 32288195 32288499 -53407255 - AluSg SINE Alu -5 305 1 1489 214 93 38 chr15 32288499 32288688 -53407066 - MLT1C LTR MaLR -289 178 1 536 324 92 36 chr15 32288688 32288871 -53406883 - L1ME4a LINE L1 -478 5643 5472 387 292 137 31 chr15 32289070 32289565 -53406189 - L1ME4a LINE L1 -1127 5019 4458 232 349 140 36 chr15 32289575 32290137 -53405617 - L2 LINE L2 -1 3271 2652 234 258 41 52 chr15 32290209 32290306 -53405448 - L2 LINE L2 -1372 1942 1847 537 315 98 56 chr15 32290366 32291048 -53404706 - L1ME4a LINE L1 -1774 4372 3662 317 274 118 10 chr15 32291182 32291284 -53404470 + MIR3 SINE MIR 81 193 -15 590 234 0 8 chr15 32291581 32291705 -53404049 + MIR SINE MIR 21 143 -65 250 301 51 68 chr15 32291826 32292002 -53403752 - MIR SINE MIR -70 192 20 814 336 16 8 chr15 32293668 32293924 -53401830 - MIR SINE MIR -3 259 2 236 250 0 0 chr15 32294175 32294251 -53401503 + (TA)n Simple_repeat Simple_repeat 1 76 0 737 167 23 15 chr15 32294252 32294384 -53401370 - AluSq/x SINE Alu -178 134 2 22 35 0 0 chr15 32294384 32294413 -53401341 + AT_rich Low_complexity Low_complexity 1 29 0 33 73 0 0 chr15 32295429 32295497 -53400257 + AT_rich Low_complexity Low_complexity 1 68 0 821 317 33 64 chr15 32296035 32296489 -53399265 - LTR16B LTR ERVL -23 441 2 2460 64 0 0 chr15 32296514 32296812 -53398942 - AluY SINE Alu -13 298 1 318 50 0 0 chr15 32297075 32297115 -53398639 + (TG)n Simple_repeat Simple_repeat 2 41 0 1599 145 70 36 chr15 32298224 32298583 -53397171 + THE1C LTR MaLR 3 373 -2 1225 234 87 19 chr15 32299017 32299338 -53396416 - MER2 DNA MER2_type 0 344 2 1777 151 10 7 chr15 32300697 32300996 -53394758 - AluSx SINE Alu -11 301 2 21 0 0 0 chr15 32302542 32302563 -53393191 + AT_rich Low_complexity Low_complexity 1 21 0 506 331 56 32 chr15 32302620 32302871 -53392883 - MIR SINE MIR -4 258 2 320 321 172 14 chr15 32302976 32303191 -53392563 + L3 LINE CR1 378 626 -951 1451 192 34 6 chr15 32303207 32303530 -53392224 - L1MA4 LINE L1 -11 6289 5958 659 95 0 0 chr15 32303530 32303625 -53392129 - L1 LINE L1 -1537 4609 4515 427 336 21 0 chr15 32303649 32303792 -53391962 + L3 LINE CR1 663 808 -769 354 293 0 0 chr15 32303796 32303902 -53391852 - MLT1I LTR MaLR 0 409 304 243 243 68 14 chr15 32303948 32304022 -53391732 - MLT1J1 LTR MaLR -110 336 259 613 336 128 30 chr15 32304025 32304361 -53391393 + L3 LINE CR1 1209 1577 0 888 268 85 18 chr15 32304374 32304779 -53390975 - MLT1H LTR MaLR 0 549 10 382 343 29 0 chr15 32306546 32306683 -53389071 + MIR SINE MIR 28 168 -94 428 287 11 0 chr15 32306800 32306894 -53388860 + MER81 DNA DNA 20 114 0 1490 62 1 2 chr15 32307013 32307222 -53388532 + L1P LINE L1 4761 4967 -1179 2032 96 34 14 chr15 32307619 32307912 -53387842 - AluY SINE Alu -12 299 1 1573 173 39 45 chr15 32307931 32308243 -53387511 - AluJb SINE Alu -2 310 1 300 322 63 40 chr15 32309926 32310100 -53385654 + MIR SINE MIR 83 260 -2 814 212 0 30 chr15 32310380 32310545 -53385209 - AluJb SINE Alu -5 307 148 38 0 0 0 chr15 32310758 32310796 -53384958 + AT_rich Low_complexity Low_complexity 1 38 0 1831 139 21 11 chr15 32310962 32311249 -53384505 + AluSx SINE Alu 1 290 -22 239 315 7 68 chr15 32311752 32311898 -53383856 - L3b LINE CR1 -124 1459 1323 2082 184 127 22 chr15 32312307 32312764 -53382990 + MLT1D LTR MaLR 1 505 0 202 313 0 47 chr15 32312952 32313016 -53382738 - L2 LINE L2 -2 3270 3210 704 262 39 0 chr15 32313213 32313442 -53382312 + L1MA9 LINE L1 6038 6275 -37 203 77 0 51 chr15 32313771 32313810 -53381944 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 557 261 138 11 chr15 32314649 32314837 -53380917 - MIR SINE MIR -19 243 32 198 275 0 0 chr15 32315094 32315163 -53380591 + CT-rich Low_complexity Low_complexity 2 70 0 373 219 107 58 chr15 32315163 32315368 -53380386 - L1MC/D LINE L1 -2338 5470 5256 24 67 0 0 chr15 32315678 32315723 -53380031 + AT_rich Low_complexity Low_complexity 1 45 0 873 236 76 53 chr15 32315810 32316514 -53379240 + L1ME LINE L1 4141 4828 -1336 2573 45 3 0 chr15 32316514 32316824 -53378930 + AluY SINE Alu 1 311 0 873 236 76 53 chr15 32316824 32317337 -53378417 + L1ME LINE L1 4828 5583 -581 417 305 46 101 chr15 32318823 32319387 -53376367 + L2 LINE L2 2763 3310 -3 255 207 46 46 chr15 32320179 32320266 -53375488 - LTR33 LTR ERVL 0 521 435 579 285 14 42 chr15 32320303 32320517 -53375237 - L1ME2 LINE L1 -22 6142 5935 7004 112 8 3 chr15 32320518 32321693 -53374061 + L1MA3 LINE L1 5115 6295 -10 714 237 136 4 chr15 32321702 32321930 -53373824 - L1ME2 LINE L1 -217 5945 5688 522 0 0 0 chr15 32321997 32322055 -53373699 + (TA)n Simple_repeat Simple_repeat 2 59 0 3768 274 45 22 chr15 32322072 32323552 -53372202 - L1MC/D LINE L1 -1038 5108 3595 1680 40 10 0 chr15 32324802 32325004 -53370750 - AluY SINE Alu -8 303 100 229 146 36 36 chr15 32325012 32325067 -53370687 + MER5C DNA MER1_type 70 124 -200 23 33 0 0 chr15 32327294 32327324 -53368430 + AT_rich Low_complexity Low_complexity 1 30 0 314 302 101 38 chr15 32328530 32328689 -53367065 + L1M4b LINE L1 1373 1541 -5318 295 305 80 52 chr15 32328721 32329295 -53366459 + L1M4b LINE L1 1736 2325 -4813 7432 197 28 7 chr15 32329302 32330743 -53365011 - L1PA16 LINE L1 -6 6160 4638 230 20 41 41 chr15 32330743 32330792 -53364962 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7432 197 28 7 chr15 32330792 32331946 -53363808 - L1PA16 LINE L1 -1528 4638 3510 295 305 79 6 chr15 32331976 32332140 -53363614 + L1M4b LINE L1 2387 2562 -4576 339 228 76 44 chr15 32332463 32332621 -53363133 - MER113 DNA MER1_type? -340 181 19 233 281 0 0 chr15 32332975 32333032 -53362722 - L2 LINE L2 -3 3310 3254 22 0 0 0 chr15 32333539 32333561 -53362193 + AT_rich Low_complexity Low_complexity 1 22 0 11131 27 1 1 chr15 32333561 32335657 -53360097 - L1PA4 LINE L1 -3 6152 4058 1799 116 4 0 chr15 32336148 32336398 -53359356 - AluSx SINE Alu -19 293 43 403 346 114 38 chr15 32336494 32337091 -53358663 + L2 LINE L2 2532 3224 -89 1869 128 3 28 chr15 32337091 32337410 -53358344 - AluSq SINE Alu 0 312 1 403 346 114 38 chr15 32337410 32337495 -53358259 + L2 LINE L2 3224 3301 -12 37 62 0 0 chr15 32337673 32337738 -53358016 + AT_rich Low_complexity Low_complexity 1 65 0 297 230 168 9 chr15 32337960 32338073 -53357681 - MIR SINE MIR -1 261 131 22 35 0 0 chr15 32338658 32338687 -53357067 + AT_rich Low_complexity Low_complexity 1 29 0 226 257 177 26 chr15 32339423 32339536 -53356218 - MIR SINE MIR -88 174 45 259 281 148 0 chr15 32339789 32339985 -53355769 - L1MC4a LINE L1 -1883 5925 5701 6965 52 42 3 chr15 32340356 32341431 -53354323 - L1PA7 LINE L1 -13 6141 5055 222 62 0 0 chr15 32342191 32342223 -53353531 + (CA)n Simple_repeat Simple_repeat 1 32 0 380 331 278 6 chr15 32343237 32343557 -53352197 - L2 LINE L2 -384 2930 2524 22 0 0 0 chr15 32343748 32343770 -53351984 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 32344119 32344142 -53351612 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr15 32345163 32345188 -53350566 + AT_rich Low_complexity Low_complexity 1 25 0 348 321 79 42 chr15 32345447 32345712 -53350042 + L1MEd LINE L1 74 348 -5771 1304 271 70 50 chr15 32345728 32346269 -53349485 + L1M4 LINE L1 3593 4121 -2025 710 32 0 21 chr15 32346269 32346364 -53349390 + L1PA4 LINE L1 6063 6155 0 1304 271 70 50 chr15 32346364 32346486 -53349268 + L1M4 LINE L1 4121 4275 -1871 2035 101 49 0 chr15 32346486 32346773 -53348981 + AluSx SINE Alu 1 301 -11 1304 271 70 50 chr15 32346773 32346831 -53348923 + L1M4 LINE L1 4275 4330 -1816 1077 175 5 0 chr15 32346981 32347175 -53348579 + L1P5 LINE L1 3 197 -6666 3322 107 2 4 chr15 32347176 32348184 -53347570 + L1P5 LINE L1 634 1796 -5067 14127 208 16 12 chr15 32348304 32352397 -53343357 + L1P5 LINE L1 2388 6504 -363 399 41 0 0 chr15 32353934 32353983 -53341771 + (ATG)n Simple_repeat Simple_repeat 2 50 0 890 221 94 85 chr15 32353991 32354298 -53341456 + MSTB1 LTR MaLR 9 318 -114 606 289 17 12 chr15 32354594 32354767 -53340987 + MIR SINE MIR 12 185 -77 2070 169 37 27 chr15 32354767 32355184 -53340570 - MSTB LTR MaLR 0 402 1 255 260 52 0 chr15 32355185 32355262 -53340492 + MIR SINE MIR 182 262 0 303 267 198 10 chr15 32355285 32355386 -53340368 - L2 LINE L2 0 3313 3194 2085 169 37 27 chr15 32405550 32405967 -53289787 - MSTB LTR MaLR 0 402 1 250 260 52 0 chr15 32405968 32406045 -53289709 + MIR SINE MIR 182 262 0 473 270 67 113 chr15 32406068 32406368 -53289386 - L2 LINE L2 0 3313 3028 878 257 16 23 chr15 32407012 32407319 -53288435 - AluJb SINE Alu -2 310 6 641 244 23 60 chr15 32407941 32408158 -53287596 + MER63A DNA MER1_type 2 210 0 356 192 0 0 chr15 32409718 32409796 -53285958 + L1MA8 LINE L1 6209 6286 -5 208 388 26 9 chr15 32412129 32412245 -53283509 + L2 LINE L2 2606 2723 -591 268 293 50 66 chr15 32412504 32412685 -53283069 + MIR3 SINE MIR 8 185 -23 211 364 27 32 chr15 32414960 32415147 -53280607 - L2 LINE L2 -260 3012 2827 938 252 78 90 chr15 32415377 32415415 -53280339 + HsTC2a DNA Tc2 4 41 -1859 8118 26 5 1 chr15 32415415 32417158 -53278596 + L1PA3 LINE L1 4405 6153 -2 938 252 78 90 chr15 32417158 32417785 -53277969 + HsTC2a DNA Tc2 41 661 -83 3336 151 39 0 chr15 32417974 32418569 -53277185 + L1P LINE L1 4277 4894 -1252 * 7190 172 18 19 chr15 32418537 32421701 -53274053 + L1MA3 LINE L1 3166 6305 0 25 0 0 0 chr15 32422164 32422189 -53273565 + AT_rich Low_complexity Low_complexity 1 25 0 4896 158 12 2 chr15 32422394 32423252 -53272502 - L1P LINE L1 -1778 4368 3503 2883 221 77 29 chr15 32423253 32424571 -53271183 - MER52A LTR ERV1 0 1755 235 9955 167 21 11 chr15 32424571 32426245 -53269509 - L1M1 LINE L1 -5862 1703 14 3976 183 55 11 chr15 32426315 32427169 -53268585 - L1MA8 LINE L1 -24 6267 5376 775 144 72 0 chr15 32427534 32427687 -53268067 + L1MA7 LINE L1 6122 6285 -6 612 248 115 32 chr15 32428208 32428426 -53267328 + MIR SINE MIR 22 257 -5 416 319 98 49 chr15 32431007 32431436 -53264318 - L1MC4a LINE L1 -1755 6053 5604 2149 73 7 0 chr15 32432638 32432913 -53262841 + AluY SINE Alu 35 311 0 21 0 0 0 chr15 32433482 32433503 -53262251 + AT_rich Low_complexity Low_complexity 1 21 0 457 262 24 8 chr15 32434373 32434499 -53261255 + MIR3 SINE MIR 81 208 0 2365 84 3 0 chr15 32435110 32435406 -53260348 - AluSc SINE Alu -12 297 1 279 377 115 6 chr15 32435451 32435634 -53260120 + MIR SINE MIR 36 238 -24 22 56 0 0 chr15 32435652 32435688 -53260066 + AT_rich Low_complexity Low_complexity 1 36 0 247 326 14 72 chr15 32435696 32435834 -53259920 + L2 LINE L2 3142 3271 -1 462 254 51 37 chr15 32435877 32436046 -53259708 - MER5B DNA MER1_type 0 178 24 1699 187 0 7 chr15 32436481 32436781 -53258973 - AluJo SINE Alu -10 302 5 455 323 15 8 chr15 32437930 32438060 -53257694 - L2 LINE L2 0 3313 3183 381 244 60 65 chr15 32438553 32438721 -53257033 + MIR SINE MIR 46 212 -50 258 324 65 9 chr15 32438981 32439089 -53256665 + MIR SINE MIR 23 136 -126 275 305 78 43 chr15 32439105 32439475 -53256279 - L1M4 LINE L1 -2412 3734 3352 333 282 70 6 chr15 32439583 32439739 -53256015 - L1M4 LINE L1 -2949 3197 3032 4161 169 13 3 chr15 32440004 32440763 -53254991 - L1P LINE L1 -1311 4835 4069 1628 81 22 0 chr15 32442413 32442636 -53253118 + L1PA11 LINE L1 5939 6166 -8 26 30 0 0 chr15 32443908 32443941 -53251813 + AT_rich Low_complexity Low_complexity 1 33 0 186 284 95 42 chr15 32445146 32445241 -53250513 - L2 LINE L2 -1 3271 3172 2419 83 0 6 chr15 32446461 32446773 -53248981 - AluY SINE Alu -1 310 1 550 314 67 27 chr15 32446949 32447172 -53248582 + MIR SINE MIR 24 255 -7 25 31 0 0 chr15 32448046 32448078 -53247676 + AT_rich Low_complexity Low_complexity 1 32 0 312 316 148 32 chr15 32448452 32448762 -53246992 - L3 LINE CR1 -11 1566 1221 22 0 0 0 chr15 32449337 32449359 -53246395 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 20 chr15 32450312 32450458 -53245296 - MIR3 SINE MIR -31 177 20 3419 130 54 129 chr15 32450686 32451533 -53244221 - LTR1 LTR ERV1 0 785 2 215 208 21 0 chr15 32451824 32451872 -53243882 + MIR SINE MIR 106 154 -108 665 249 8 10 chr15 32451874 32452122 -53243632 - MER90 LTR ERV1 0 614 311 1227 198 86 0 chr15 32452122 32452365 -53243389 + Tigger7 DNA MER2_type 1 264 -469 427 240 10 31 chr15 32452402 32452498 -53243256 + Tigger7 DNA MER2_type 2389 2482 -5 895 300 36 4 chr15 32452510 32452790 -53242964 - MER90 LTR ERV1 -309 305 17 2036 126 0 17 chr15 32454090 32454384 -53241370 - AluSx SINE Alu -23 289 1 384 291 50 28 chr15 32454453 32454594 -53241160 - MIR SINE MIR -42 220 77 1638 234 23 3 chr15 32454596 32454947 -53240807 - MLT1A1 LTR MaLR -2 363 6 2151 129 36 33 chr15 32455004 32455367 -53240387 - THE1B LTR MaLR 0 364 1 228 303 15 0 chr15 32455784 32455850 -53239904 - L2 LINE L2 -18 3295 3229 357 181 143 9 chr15 32455945 32456050 -53239704 - MER63 DNA MER1_type -318 742 624 324 232 11 42 chr15 32456245 32456340 -53239414 - L1MC4 LINE L1 -1337 6705 6614 299 228 35 0 chr15 32456365 32456479 -53239275 + (TA)n Simple_repeat Simple_repeat 1 118 0 2161 71 4 7 chr15 32457229 32457558 -53238196 - AluY SINE Alu 0 328 1 226 215 31 15 chr15 32460785 32460850 -53234904 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 29 0 0 0 chr15 32460898 32460927 -53234827 + AT_rich Low_complexity Low_complexity 1 29 0 1648 215 28 85 chr15 32462357 32462957 -53232797 - L1ME1 LINE L1 -4 6231 5666 198 0 0 0 chr15 32462993 32463015 -53232739 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1073 218 31 8 chr15 32463035 32463296 -53232458 - L1ME1 LINE L1 -1994 4221 3955 367 349 62 25 chr15 32463324 32463565 -53232189 - L1ME1 LINE L1 -4727 1488 1239 1747 109 69 0 chr15 32463709 32463983 -53231771 - L1P4 LINE L1 -557 5609 5317 1057 160 0 36 chr15 32463986 32464180 -53231574 - L1PA11 LINE L1 0 6174 5988 3025 260 35 52 chr15 32464180 32465108 -53230646 - L1ME1 LINE L1 -5198 1198 293 404 39 0 0 chr15 32465108 32465159 -53230595 - L1PA3 LINE L1 -3 6152 6102 3025 260 35 52 chr15 32465159 32465414 -53230340 - L1ME1 LINE L1 -6103 293 35 23 54 0 0 chr15 32465527 32465564 -53230190 + AT_rich Low_complexity Low_complexity 1 37 0 428 245 117 61 chr15 32465565 32465761 -53229993 + L1ME1 LINE L1 395 601 -5795 329 255 21 21 chr15 32466703 32466797 -53228957 - MIR3 SINE MIR -7 201 108 22 35 0 0 chr15 32467055 32467084 -53228670 + AT_rich Low_complexity Low_complexity 1 29 0 192 304 14 29 chr15 32467906 32467975 -53227779 - L2 LINE L2 0 3272 3205 202 307 125 0 chr15 32468036 32468124 -53227630 + MIR SINE MIR 45 143 -65 180 0 0 0 chr15 32468614 32468634 -53227120 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 229 220 0 0 chr15 32470591 32470641 -53225113 + L1ME1 LINE L1 2037 2086 -4310 251 180 20 0 chr15 32470768 32470818 -53224936 - Alu SINE Alu -250 51 1 753 216 11 5 chr15 32470873 32471063 -53224691 + L1ME1 LINE L1 2186 2376 -4020 480 207 17 17 chr15 32471138 32471254 -53224500 + L1ME1 LINE L1 5418 5533 -702 232 287 53 57 chr15 32471278 32471525 -53224229 - L1MEc LINE L1 -4225 2171 1926 * 1361 247 117 70 chr15 32471521 32472165 -53223589 + L1ME1 LINE L1 5557 6230 -5 400 176 14 0 chr15 32473756 32473830 -53221924 + MER116 DNA Mariner 6 80 0 457 279 26 64 chr15 32475068 32475301 -53220453 + L1MC4 LINE L1 5600 5823 -1985 198 71 0 0 chr15 32475588 32475616 -53220138 + (TC)n Simple_repeat Simple_repeat 1 28 0 327 233 58 10 chr15 32475636 32475739 -53220015 - L1MC4 LINE L1 -1321 6721 6614 327 277 0 43 chr15 32475665 32475759 -53219995 + L1MC4 LINE L1 6614 6703 -1339 315 167 0 17 chr15 32475753 32475813 -53219941 - L1MC4 LINE L1 -1339 6703 6645 * 949 193 0 6 chr15 32475819 32475990 -53219764 - AluSg/x SINE Alu -28 284 115 1623 173 14 17 chr15 32478294 32478589 -53217165 + AluJo SINE Alu 3 296 -16 1996 103 0 61 chr15 32479116 32479446 -53216308 - AluY SINE Alu -1 310 1 515 256 83 42 chr15 32480034 32480202 -53215552 - MIR SINE MIR -38 224 50 623 259 45 8 chr15 32480206 32480468 -53215286 - L1MB7 LINE L1 -212 5968 5697 4776 183 107 2 chr15 32480669 32481592 -53214162 - LTR28 LTR ERV1 0 1020 1 216 318 0 0 chr15 32481613 32481698 -53214056 + (TA)n Simple_repeat Simple_repeat 2 86 0 315 122 0 0 chr15 32482045 32482094 -53213660 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 315 62 62 chr15 32482106 32482236 -53213518 - MIR3 SINE MIR -37 171 42 196 264 27 82 chr15 32482375 32482485 -53213269 - MIR SINE MIR -37 225 122 37 62 0 0 chr15 32483104 32483169 -53212585 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr15 32484077 32484100 -53211654 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr15 32484157 32484203 -53211551 + AT_rich Low_complexity Low_complexity 1 46 0 2048 135 0 10 chr15 32484226 32484530 -53211224 - AluSx SINE Alu -9 303 3 301 273 13 0 chr15 32486016 32486093 -53209661 - MLT1J LTR MaLR -325 186 109 324 336 38 0 chr15 32487895 32488026 -53207728 - LTR67 LTR ERVL 0 557 422 485 220 57 21 chr15 32488620 32488761 -53206993 + L1MC3 LINE L1 7640 7785 0 388 234 73 48 chr15 32489950 32490074 -53205680 - MIR SINE MIR -34 228 102 1519 258 107 43 chr15 32490085 32490786 -53204968 - MER20B DNA MER1_type -1 782 37 455 257 66 7 chr15 32490918 32491054 -53204700 - Charlie4 DNA MER1_type 0 1961 1818 469 190 149 0 chr15 32491060 32491181 -53204573 - Charlie4 DNA MER1_type -1708 253 115 277 183 52 0 chr15 32491229 32491382 -53204372 + (TA)n Simple_repeat Simple_repeat 1 161 0 1270 219 39 42 chr15 32492462 32492745 -53203009 - AluJo SINE Alu -30 282 1 428 263 0 0 chr15 32494872 32494952 -53200802 + MER5A DNA MER1_type 106 185 -4 205 231 246 0 chr15 32494956 32495021 -53200733 - MIR SINE MIR -62 146 66 998 194 22 0 chr15 32495674 32495854 -53199900 + MER5A DNA MER1_type 6 189 0 259 313 94 62 chr15 32495855 32495983 -53199771 - MIR3 SINE MIR -63 145 14 6815 69 28 9 chr15 32496381 32497927 -53197827 - L1PA7 LINE L1 0 6154 4593 254 108 0 0 chr15 32497927 32497964 -53197790 + L1PA7 LINE L1 4557 4593 -1553 434 356 19 6 chr15 32498145 32498305 -53197449 - L3 LINE CR1 -27 1550 1389 1628 117 19 30 chr15 32498736 32499002 -53196752 - MER4A LTR ERV1 -29 635 373 767 185 58 58 chr15 32499136 32499341 -53196413 - MER58A DNA MER1_type 0 224 20 22 0 0 0 chr15 32499490 32499512 -53196242 + AT_rich Low_complexity Low_complexity 1 22 0 301 279 0 0 chr15 32499540 32499626 -53196128 + MER67D LTR ERV1 3 88 -426 646 102 0 0 chr15 32499658 32499746 -53196008 + MER67D LTR ERV1 63 150 -364 432 254 82 0 chr15 32502048 32502170 -53193584 - L2 LINE L2 0 3313 3182 1815 179 14 24 chr15 32502223 32502592 -53193162 - MLT1A1 LTR MaLR 0 365 1 5413 157 22 12 chr15 32503466 32504978 -53190776 - L1MA8 LINE L1 0 6291 4767 391 254 70 9 chr15 32505628 32505742 -53190012 - MIR3 SINE MIR -3 205 85 246 148 0 0 chr15 32505834 32505888 -53189866 + (TA)n Simple_repeat Simple_repeat 1 54 0 189 107 0 0 chr15 32505883 32505911 -53189843 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 201 325 12 0 chr15 32507255 32507335 -53188419 + (TG)n Simple_repeat Simple_repeat 2 82 0 3422 151 6 32 chr15 32508881 32509539 -53186215 + L1MA8 LINE L1 5650 6290 -1 184 206 87 130 chr15 32509584 32509676 -53186078 + MIR SINE MIR 5 92 -170 265 361 44 13 chr15 32510124 32510282 -53185472 + L2 LINE L2 2624 2786 -528 555 348 138 33 chr15 32510346 32511171 -53184583 + L2 LINE L2 1817 2728 -586 261 275 43 14 chr15 32511704 32511773 -53183981 + L2 LINE L2 3193 3263 -9 5285 169 18 33 chr15 32512698 32513917 -53181837 - L1MA8 LINE L1 -1 6290 5088 30 59 0 0 chr15 32514427 32514478 -53181276 + AT_rich Low_complexity Low_complexity 1 51 0 188 306 28 14 chr15 32518491 32518563 -53177191 + MIR SINE MIR 77 149 -59 419 103 0 0 chr15 32519698 32519756 -53175998 + Alu SINE Alu 235 292 -20 212 320 143 40 chr15 32519770 32519945 -53175809 - L2 LINE L2 -1299 2015 1823 1467 143 27 0 chr15 32519952 32520176 -53175578 - MER30 DNA MER1_type 0 230 1 404 269 25 70 chr15 32520178 32520420 -53175334 + L1ME4a LINE L1 5755 5985 -136 2020 94 0 0 chr15 32520509 32520797 -53174957 - L1PA6 LINE L1 -2 6152 5865 214 271 14 14 chr15 32521724 32521794 -53173960 + GA-rich Low_complexity Low_complexity 2 71 0 525 250 120 26 chr15 32521903 32522095 -53173659 - MER63A DNA MER1_type 0 210 1 1455 219 133 27 chr15 32522374 32522625 -53173129 - MER69 DNA AcHobo -202 2324 2101 1647 179 58 128 chr15 32522625 32523178 -53172576 - MER67D LTR ERV1 0 514 1 1455 219 133 27 chr15 32523178 32523528 -53172226 - MER69 DNA AcHobo -425 2101 1659 440 229 107 15 chr15 32523525 32523656 -53172098 - MER69 DNA AcHobo -1083 143 1 * 1204 225 51 29 chr15 32523829 32524144 -53171610 + MER58B DNA MER1_type 20 341 0 180 0 0 0 chr15 32524177 32524197 -53171557 + (T)n Simple_repeat Simple_repeat 1 20 0 36 31 0 31 chr15 32524210 32524248 -53171506 + AT_rich Low_complexity Low_complexity 1 38 -25 1472 149 16 0 chr15 32524248 32524503 -53171251 - L1MA4 LINE L1 -14 6286 6028 36 31 0 31 chr15 32524503 32524529 -53171225 + AT_rich Low_complexity Low_complexity 38 63 0 228 148 0 93 chr15 32525031 32525085 -53170669 - MLT1J LTR MaLR -85 426 378 327 303 79 12 chr15 32525405 32525570 -53170184 - MLT1J LTR MaLR -335 176 1 294 317 0 48 chr15 32526260 32526364 -53169390 - MIR3 SINE MIR -11 197 99 400 283 138 6 chr15 32526927 32527086 -53168668 + MIR SINE MIR 3 182 -80 324 48 0 0 chr15 32527403 32527445 -53168309 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 267 0 17 chr15 32527720 32527780 -53167974 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1101 281 107 42 chr15 32530004 32530481 -53165273 + L2 LINE L2 1331 1838 -1476 1469 222 132 66 chr15 32530513 32531042 -53164712 - L1ME1 LINE L1 -21 6145 5653 186 43 0 0 chr15 32531042 32531065 -53164689 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1469 222 132 66 chr15 32531065 32531257 -53164497 - L1ME1 LINE L1 -513 5653 5475 979 144 22 0 chr15 32531257 32531437 -53164317 - L1MA8 LINE L1 -5 6286 6103 1469 222 132 66 chr15 32531437 32532130 -53163624 - L1ME1 LINE L1 -691 5475 4532 1478 286 127 23 chr15 32532331 32532936 -53162818 + L2 LINE L2 2132 2799 -515 511 232 221 6 chr15 32533017 32533198 -53162556 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 32533743 32533946 -53161808 - MIR SINE MIR -53 209 2 2272 91 0 3 chr15 32533958 32534265 -53161489 - AluSx SINE Alu -6 306 1 365 119 0 0 chr15 32534301 32534360 -53161394 + L1PA16 LINE L1 5418 5476 -687 5991 155 10 4 chr15 32534370 32534738 -53161016 - L1PB1 LINE L1 -2 6149 5785 216 0 0 0 chr15 32534738 32534762 -53160992 + (TA)n Simple_repeat Simple_repeat 2 25 0 5991 155 10 4 chr15 32534762 32536019 -53159735 - L1PB1 LINE L1 -366 5785 4518 3937 140 56 1 chr15 32536019 32536682 -53159072 + L1PA16 LINE L1 5456 6157 -9 2132 70 0 0 chr15 32536831 32537090 -53158664 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 32537174 32537388 -53158366 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 32537466 32537676 -53158078 + AluJo SINE Alu 86 294 -18 810 288 97 46 chr15 32537979 32538330 -53157424 + L2 LINE L2 2431 2799 -515 511 232 221 6 chr15 32538411 32538592 -53157162 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 32539137 32539340 -53156414 - MIR SINE MIR -53 209 2 1883 108 0 4 chr15 32539352 32539629 -53156125 - AluSx SINE Alu -6 306 31 244 125 0 89 chr15 32539706 32539762 -53155992 + L1P4 LINE L1 5429 5479 -682 558 182 88 0 chr15 32539762 32539943 -53155811 - L1PB1 LINE L1 -2 6149 5953 24 53 0 0 chr15 32540214 32540252 -53155502 + AT_rich Low_complexity Low_complexity 1 38 0 2068 73 0 4 chr15 32540387 32540647 -53155107 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 32540731 32540945 -53154809 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 32541023 32541233 -53154521 + AluJo SINE Alu 86 294 -18 209 0 97 0 chr15 32541428 32541459 -53154295 + T-rich Low_complexity Low_complexity 3 36 0 2171 95 10 0 chr15 32541794 32542088 -53153666 - AluSx SINE Alu -15 297 1 1729 194 25 73 chr15 32542315 32542824 -53152930 - MER31A LTR ERV1 0 485 1 1098 301 77 20 chr15 32543322 32543761 -53151993 + L2 LINE L2 2398 2861 -453 200 169 119 34 chr15 32543855 32543914 -53151840 + L2 LINE L2 3250 3313 0 254 307 30 10 chr15 32544034 32544135 -53151619 + MLT1J2 LTR MaLR 78 180 -270 340 243 19 58 chr15 32544219 32544322 -53151432 + MLT1I LTR MaLR 323 407 -2 229 342 62 26 chr15 32544362 32544555 -53151199 + L2 LINE L2 2699 2898 -416 350 344 39 0 chr15 32544947 32545075 -53150679 + MIR SINE MIR 1 133 -129 315 266 13 0 chr15 32545493 32545572 -53150182 - L2 LINE L2 -4 3309 3230 22 0 0 0 chr15 32545582 32545604 -53150150 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 32546052 32546073 -53149681 + AT_rich Low_complexity Low_complexity 1 21 0 238 229 0 0 chr15 32546822 32546870 -53148884 - L1ME LINE L1 -386 5735 5688 330 273 94 31 chr15 32546873 32547001 -53148753 + MLT1J LTR MaLR 181 316 -195 61 58 0 0 chr15 32547711 32547814 -53147940 + AT_rich Low_complexity Low_complexity 1 103 0 313 322 150 11 chr15 32548103 32548283 -53147471 + L1ME3A LINE L1 3639 3843 -2303 318 313 85 20 chr15 32548359 32548605 -53147149 + L1ME3A LINE L1 5620 5881 -290 2196 76 3 13 chr15 32548647 32548949 -53146805 - AluY SINE Alu -12 299 1 229 400 33 0 chr15 32550318 32550408 -53145346 + L2 LINE L2 3203 3295 -18 288 168 30 0 chr15 32550913 32551014 -53144740 + (TA)n Simple_repeat Simple_repeat 1 104 0 356 266 77 65 chr15 32551740 32551909 -53143845 - L2 LINE L2 -3 3310 3140 180 0 0 0 chr15 32552084 32552104 -53143650 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 615 283 80 12 chr15 32552262 32552513 -53143241 + L2 LINE L2 1910 2177 -1137 513 308 25 43 chr15 32552695 32552915 -53142839 + MIR SINE MIR 2 213 -49 2439 168 27 0 chr15 32553479 32553883 -53141871 + MSTC LTR MaLR 1 415 -13 2089 110 0 3 chr15 32554025 32554317 -53141437 - AluSx SINE Alu -21 291 1 25 31 0 0 chr15 32554339 32554371 -53141383 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr15 32554380 32554423 -53141331 + AT_rich Low_complexity Low_complexity 1 43 0 427 284 55 46 chr15 32554585 32555064 -53140690 - L1ME4a LINE L1 -157 5964 5481 1244 246 13 43 chr15 32555064 32555438 -53140316 - MLT1A1 LTR MaLR 0 365 3 427 284 55 46 chr15 32555438 32555559 -53140195 - L1ME4a LINE L1 -640 5481 5363 27 62 0 0 chr15 32556131 32556179 -53139575 + AT_rich Low_complexity Low_complexity 1 48 0 219 242 0 16 chr15 32556507 32556569 -53139185 + (TATG)n Simple_repeat Simple_repeat 3 63 0 10994 194 39 25 chr15 32556702 32559270 -53136484 - L1 LINE L1 -1215 5633 3030 1768 250 70 68 chr15 32559268 32560292 -53135462 - L1 LINE L1 -4230 2619 1594 * 477 346 76 39 chr15 32560786 32561220 -53134534 - L1 LINE L1 -5830 949 500 537 212 9 18 chr15 32561279 32561392 -53134362 + MER5A DNA MER1_type 54 165 -24 2121 129 0 0 chr15 32561762 32562065 -53133689 - AluSq SINE Alu -8 305 3 416 320 103 5 chr15 32562162 32562365 -53133389 - L2 LINE L2 -463 2851 2629 814 165 0 19 chr15 32564033 32564191 -53131563 - L1MA10 LINE L1 -1 6333 6179 201 74 0 0 chr15 32564407 32564434 -53131320 + (A)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr15 32565736 32565771 -53129983 + AT_rich Low_complexity Low_complexity 1 35 0 271 379 11 52 chr15 32566089 32566263 -53129491 + L2 LINE L2 3106 3272 0 956 219 20 0 chr15 32566411 32566612 -53129142 + MER3 DNA MER1_type 1 205 -4 270 233 326 12 chr15 32566699 32566785 -53128969 + MER96 DNA MER1_type? 63 175 0 31 88 0 0 chr15 32569468 32569548 -53126206 + AT_rich Low_complexity Low_complexity 1 80 0 1954 149 33 54 chr15 32569549 32569978 -53125776 - L1MA8 LINE L1 -5 6286 5867 2798 129 20 22 chr15 32570391 32570896 -53124858 + L1MA8 LINE L1 5783 6286 -5 275 266 26 18 chr15 32571244 32571357 -53124397 - L1ME3A LINE L1 -228 5942 5829 436 212 0 61 chr15 32571438 32571537 -53124217 + MER3 DNA MER1_type 1 93 -116 25 0 0 0 chr15 32571543 32571568 -53124186 + AT_rich Low_complexity Low_complexity 1 25 0 433 290 84 55 chr15 32571609 32571901 -53123853 - LTR16A LTR ERVL -69 381 59 7357 188 112 22 chr15 32571901 32573511 -53122243 - MER52A LTR ERV1 0 1755 1 433 290 84 55 chr15 32573511 32573567 -53122187 - LTR16A LTR ERVL -391 59 6 601 302 1 42 chr15 32573579 32573866 -53121888 - L1ME3A LINE L1 -337 5825 5547 356 263 0 0 chr15 32574047 32574123 -53121631 + MLT1E1 LTR MaLR 53 128 -465 637 258 24 0 chr15 32574158 32574325 -53121429 + MLT1E1 LTR MaLR 125 295 -359 1037 237 16 16 chr15 32574354 32574607 -53121147 + MLT1E1 LTR MaLR 401 653 -1 23 0 0 0 chr15 32574894 32574917 -53120837 + AT_rich Low_complexity Low_complexity 1 23 0 396 163 62 0 chr15 32575231 32575311 -53120443 - LTR16C LTR ERVL 0 491 407 852 263 40 43 chr15 32575509 32575813 -53119941 + MLT1C LTR MaLR 53 355 -112 605 217 109 59 chr15 32575808 32576051 -53119703 - MLT1G1 LTR MaLR -297 298 1 * 322 217 0 0 chr15 32576057 32576117 -53119637 - MLT1J1 LTR MaLR -384 62 3 1650 194 45 20 chr15 32576198 32576554 -53119200 - MLT1A1 LTR MaLR 0 365 1 381 311 37 70 chr15 32576732 32576973 -53118781 - L3 LINE CR1 -157 1420 1188 27 0 0 0 chr15 32577210 32577237 -53118517 + AT_rich Low_complexity Low_complexity 1 27 0 210 330 57 9 chr15 32577293 32577399 -53118355 - MIR SINE MIR -64 144 34 25 0 0 0 chr15 32577433 32577458 -53118296 + AT_rich Low_complexity Low_complexity 1 25 0 370 319 0 36 chr15 32578253 32578391 -53117363 - MER5A DNA MER1_type -56 133 1 4510 188 34 17 chr15 32578513 32580359 -53115395 - L1MA8 LINE L1 -4 6287 4407 12300 194 34 28 chr15 32580441 32580960 -53114794 + L1MA4A LINE L1 2510 3025 -3278 1448 193 39 35 chr15 32580960 32581271 -53114483 + AluJb SINE Alu 1 312 0 12300 194 34 28 chr15 32581271 32584523 -53111231 + L1MA4A LINE L1 3025 6303 0 203 189 0 0 chr15 32584879 32584916 -53110838 + MIR SINE MIR 118 154 -108 1831 236 10 2 chr15 32584931 32585381 -53110373 - MER89 LTR ERV1 -2 557 5 1529 179 90 75 chr15 32585751 32586216 -53109538 - MER41B LTR ERV1 -23 612 141 188 368 81 29 chr15 32587399 32587573 -53108181 + L2 LINE L2 2127 2309 -1005 247 329 33 46 chr15 32587657 32587809 -53107945 + L2 LINE L2 2699 2848 -466 586 283 21 27 chr15 32587942 32588129 -53107625 + MER5A DNA MER1_type 2 187 -2 400 200 70 0 chr15 32588131 32588231 -53107523 - MER103 DNA DNA -49 117 11 2136 136 0 0 chr15 32588389 32588691 -53107063 - AluSx SINE Alu -10 302 1 28 0 0 0 chr15 32590079 32590107 -53105647 + AT_rich Low_complexity Low_complexity 1 28 0 221 274 49 49 chr15 32591174 32591276 -53104478 + MIR SINE MIR 5 106 -156 186 103 0 0 chr15 32591294 32591323 -53104431 + (CA)n Simple_repeat Simple_repeat 1 29 0 530 261 0 45 chr15 32592420 32592554 -53103200 + MIR3 SINE MIR 76 203 -5 325 331 26 13 chr15 32594032 32594186 -53101568 + MER5A DNA MER1_type 7 162 -27 191 236 109 0 chr15 32594439 32594494 -53101260 + L2 LINE L2 3192 3252 -61 23 33 0 0 chr15 32594620 32594650 -53101104 + AT_rich Low_complexity Low_complexity 1 30 0 5282 255 84 38 chr15 32594761 32597648 -53098106 - L1ME1 LINE L1 -5 6161 3112 535 282 57 61 chr15 32598627 32599152 -53096602 - L1MC5 LINE L1 -67 7894 7372 256 306 116 0 chr15 32599182 32599329 -53096425 - L1MC4 LINE L1 -555 7487 7324 1071 45 0 0 chr15 32599422 32599555 -53096199 - L1PA5 LINE L1 -6 6148 6016 950 18 0 0 chr15 32599555 32599665 -53096089 + L1PA4 LINE L1 5771 5880 -275 361 250 6 81 chr15 32599660 32599820 -53095934 - L1MC5 LINE L1 -783 7178 7031 * 235 200 0 92 chr15 32599890 32599955 -53095799 - L2 LINE L2 -1 3312 3254 543 253 49 12 chr15 32601266 32601428 -53094326 - MIR SINE MIR -37 225 58 796 203 0 0 chr15 32601937 32602090 -53093664 + FRAM SINE Alu 13 165 -11 1634 140 40 20 chr15 32602105 32602405 -53093349 + AluJo SINE Alu 1 306 -6 624 264 47 59 chr15 32603744 32603998 -53091756 - MIR SINE MIR -10 252 2 718 233 79 82 chr15 32604657 32605060 -53090694 - MER39 LTR ERV1 0 707 306 377 300 9 0 chr15 32605086 32605196 -53090558 - MER34 LTR ERV1 -428 114 4 2488 65 3 0 chr15 32606585 32606894 -53088860 + AluY SINE Alu 1 310 -1 1902 158 3 0 chr15 32607404 32607714 -53088040 + AluY SINE Alu 1 311 0 314 280 24 24 chr15 32608301 32608426 -53087328 - L1MC5 LINE L1 -1897 5911 5787 323 217 221 60 chr15 32608563 32608780 -53086974 - L1MC5 LINE L1 -2301 5507 5256 5171 158 33 3 chr15 32608855 32610384 -53085370 - L1PA15 LINE L1 -2 6163 4608 2627 245 62 27 chr15 32610384 32611528 -53084226 - L1ME LINE L1 -584 5582 4392 1112 112 0 0 chr15 32611556 32611708 -53084046 + AluSg/x SINE Alu 149 300 -12 1452 148 89 43 chr15 32611709 32612034 -53083720 - THE1C LTR MaLR -35 340 1 1964 226 74 26 chr15 32612034 32612738 -53083016 - L1ME LINE L1 -1749 4397 3660 2052 121 10 7 chr15 32613849 32614146 -53081608 + AluSx SINE Alu 1 298 -14 443 337 123 62 chr15 32615159 32615742 -53080012 - L2 LINE L2 -4 3268 2658 290 333 44 49 chr15 32616174 32616357 -53079397 + L2 LINE L2 2296 2477 -837 * 461 343 166 24 chr15 32616341 32616720 -53079034 + L2 LINE L2 2881 3313 0 302 222 69 0 chr15 32617202 32617274 -53078480 + L2 LINE L2 3191 3267 -5 758 123 0 0 chr15 32617402 32617542 -53078212 - AluSc SINE Alu 0 304 165 268 235 0 0 chr15 32619629 32619680 -53076074 - MLT1F LTR MaLR 0 542 492 1184 281 37 3 chr15 32619708 32620057 -53075697 - MLT1F LTR MaLR -181 361 1 23 0 0 0 chr15 32620251 32620274 -53075480 + AT_rich Low_complexity Low_complexity 1 23 0 199 187 0 173 chr15 32620422 32620497 -53075257 - MER5A DNA MER1_type 0 189 128 565 247 209 0 chr15 32620520 32620678 -53075076 - MIR SINE MIR -16 246 56 793 218 41 6 chr15 32620944 32621114 -53074640 + MER5A DNA MER1_type 14 189 0 333 273 143 37 chr15 32621326 32621487 -53074267 - L2 LINE L2 -2 3311 3134 899 342 71 42 chr15 32621499 32622345 -53073409 + L2 LINE L2 2316 3193 -120 225 0 0 0 chr15 32622444 32622469 -53073285 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 202 48 19 chr15 32622543 32622647 -53073107 + (TA)n Simple_repeat Simple_repeat 2 108 0 391 205 13 0 chr15 32622649 32622727 -53073027 + MER112 DNA MER1_type 180 258 -2 22 56 0 0 chr15 32622790 32622826 -53072928 + AT_rich Low_complexity Low_complexity 1 36 0 1084 195 72 81 chr15 32625234 32625679 -53070075 - MLT1D LTR MaLR -2 565 57 1240 297 63 41 chr15 32625680 32626171 -53069583 - MLT1E LTR MaLR -89 504 3 496 301 142 18 chr15 32626174 32626400 -53069354 + MIR SINE MIR 3 256 -6 2621 96 3 3 chr15 32626634 32626989 -53068765 + THE1A LTR MaLR 1 355 0 27 73 0 0 chr15 32627115 32627170 -53068584 + AT_rich Low_complexity Low_complexity 1 55 0 533 300 60 48 chr15 32627263 32627683 -53068071 - HAL1b LINE L1 -732 616 343 566 310 130 11 chr15 32627693 32628183 -53067571 + L2 LINE L2 2705 3272 0 413 219 76 0 chr15 32628576 32628681 -53067073 - L1MB7 LINE L1 -79 6105 5993 329 167 0 0 chr15 32628682 32628742 -53067012 + L1MB8 LINE L1 6107 6166 -12 212 256 156 0 chr15 32630022 32630112 -53065642 - MIR SINE MIR -75 187 84 698 221 58 5 chr15 32631294 32631518 -53064236 + L1MA4 LINE L1 6056 6300 0 375 284 138 0 chr15 32631593 32631709 -53064045 - L2 LINE L2 -3 3269 3138 223 371 62 0 chr15 32631797 32631894 -53063860 - L2 LINE L2 -190 3082 2980 17157 95 12 3 chr15 32631902 32634966 -53060788 + L1PA7 LINE L1 2801 5888 -266 216 255 0 0 chr15 32635685 32635736 -53060018 + A-rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr15 32636394 32636418 -53059336 + AT_rich Low_complexity Low_complexity 1 24 0 2309 67 13 41 chr15 32637482 32637797 -53057957 - AluY SINE Alu -5 306 1 180 111 0 0 chr15 32638807 32638834 -53056920 + (T)n Simple_repeat Simple_repeat 1 27 0 2124 87 0 24 chr15 32641734 32642059 -53053695 - AluSx SINE Alu 0 318 1 597 353 123 20 chr15 32643563 32644212 -53051542 + L2 LINE L2 2044 2759 -555 216 344 0 32 chr15 32645072 32645165 -53050589 - MIR3 SINE MIR -6 202 113 21 71 0 0 chr15 32646043 32646085 -53049669 + AT_rich Low_complexity Low_complexity 1 42 0 415 318 30 30 chr15 32646457 32646589 -53049165 + L2 LINE L2 3137 3268 -4 1976 134 14 3 chr15 32647435 32647727 -53048027 - AluSx SINE Alu -17 295 1 870 244 0 21 chr15 32647752 32647945 -53047809 + MER5A DNA MER1_type 1 189 0 209 329 12 24 chr15 32649045 32649130 -53046624 - MER5A DNA MER1_type -1 188 105 276 269 0 21 chr15 32650375 32650468 -53045286 + A-rich Low_complexity Low_complexity 2 92 0 21 36 0 0 chr15 32652988 32653016 -53042738 + AT_rich Low_complexity Low_complexity 1 28 0 257 291 223 10 chr15 32653801 32653904 -53041850 - MER5B DNA MER1_type -52 126 2 27 29 0 0 chr15 32654892 32654926 -53040828 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr15 32654972 32654996 -53040758 + AT_rich Low_complexity Low_complexity 1 24 0 2056 118 3 10 chr15 32655112 32655417 -53040337 - AluSq SINE Alu -10 303 1 22 0 0 0 chr15 32655550 32655572 -53040182 + AT_rich Low_complexity Low_complexity 1 22 0 351 39 39 0 chr15 32658543 32658594 -53037160 + AluY SINE Alu 250 302 0 776 241 21 16 chr15 32658807 32658994 -53036760 + MER5A DNA MER1_type 1 188 -1 311 267 144 14 chr15 32659868 32660014 -53035740 + MIR SINE MIR 98 262 0 239 346 0 0 chr15 32660061 32660142 -53035612 + L2 LINE L2 3180 3260 -12 1583 100 26 13 chr15 32660677 32660907 -53034847 + AluSg/x SINE Alu 75 307 -5 207 154 19 19 chr15 32660940 32660992 -53034762 + T-rich Low_complexity Low_complexity 3 54 0 205 316 175 70 chr15 32662024 32662195 -53033559 + L2 LINE L2 3079 3267 -5 22 0 0 0 chr15 32663964 32663986 -53031768 + AT_rich Low_complexity Low_complexity 1 22 0 374 294 37 25 chr15 32664743 32664906 -53030848 - L1M4 LINE L1 -1191 5191 5027 2493 148 34 2 chr15 32664913 32665324 -53030430 + MSTA LTR MaLR 1 424 -4 629 268 124 6 chr15 32665377 32665732 -53030022 - L1M4 LINE L1 -1421 4961 4565 516 273 0 0 chr15 32665832 32665971 -53029783 - L1M4 LINE L1 -4800 1584 1446 1705 130 17 23 chr15 32665991 32666290 -53029464 - L1PA16 LINE L1 -9 6157 5861 256 0 24 49 chr15 32666321 32666362 -53029392 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 2541 141 70 12 chr15 32666362 32666850 -53028904 - L1MA4 LINE L1 -14 6286 5771 292 179 104 28 chr15 32666854 32666867 -53028887 - L1MA4A LINE L1 0 6303 6291 3350 157 108 49 chr15 32666867 32667832 -53027922 - L1MA4A LINE L1 0 6163 5256 2000 188 72 7 chr15 32667832 32668237 -53027517 - MSTB1 LTR MaLR -1 431 1 3350 157 108 49 chr15 32668237 32668413 -53027341 - L1MA4A LINE L1 -907 5256 5092 387 0 0 0 chr15 32668413 32668456 -53027298 + (TTA)n Simple_repeat Simple_repeat 3 45 0 24409 30 1 0 chr15 32668456 32672165 -53023589 - L1PA3 LINE L1 -18 6137 2427 3350 157 108 49 chr15 32672165 32672255 -53023499 - L1MA4A LINE L1 -1070 5093 4828 7079 225 32 120 chr15 32672306 32675867 -53019887 - L1 LINE L1 -3595 3253 5 25 75 0 0 chr15 32676066 32676119 -53019635 + AT_rich Low_complexity Low_complexity 1 53 0 289 328 127 22 chr15 32676393 32676527 -53019227 + MER5A DNA MER1_type 1 148 -41 1320 145 0 1 chr15 32676620 32676888 -53018866 - AluSc SINE Alu 0 307 1 257 132 0 19 chr15 32677058 32677111 -53018643 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 233 0 0 chr15 32678386 32678429 -53017325 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 1067 266 61 66 chr15 32678571 32679261 -53016493 + L2 LINE L2 2549 3244 -69 1790 159 36 7 chr15 32679261 32679384 -53016370 + AluSx SINE Alu 1 119 -193 351 0 0 0 chr15 32679384 32679423 -53016331 + (CA)n Simple_repeat Simple_repeat 2 40 0 1790 159 36 7 chr15 32679423 32679600 -53016154 + AluSx SINE Alu 119 310 -2 1067 266 61 66 chr15 32679600 32679670 -53016084 + L2 LINE L2 3244 3313 0 2062 157 0 0 chr15 32680618 32680923 -53014831 + AluSx SINE Alu 1 305 -7 198 191 0 0 chr15 32682612 32682654 -53013100 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 430 225 22 0 chr15 32682769 32682858 -53012896 - MLT1J1 LTR MaLR -355 91 1 196 385 0 24 chr15 32684207 32684290 -53011464 + L2 LINE L2 3191 3271 -1 1161 253 68 18 chr15 32684359 32684801 -53010953 - Zaphod DNA AcHobo 0 4031 3568 2687 232 68 92 chr15 32684808 32684854 -53010900 - Zaphod DNA AcHobo -2889 1142 1096 2248 53 42 7 chr15 32684854 32685138 -53010616 + AluY SINE Alu 1 294 -17 2687 232 68 92 chr15 32685138 32686260 -53009494 - Zaphod DNA AcHobo -2935 1096 1 221 146 21 0 chr15 32686496 32686544 -53009210 + CT-rich Low_complexity Low_complexity 3 51 0 402 206 0 28 chr15 32687272 32687379 -53008375 + L1PA11 LINE L1 6069 6172 -2 22 0 0 0 chr15 32687710 32687732 -53008022 + AT_rich Low_complexity Low_complexity 1 22 0 238 285 97 59 chr15 32688382 32688568 -53007186 - L2 LINE L2 -18 3295 3103 29 47 0 0 chr15 32688776 32688819 -53006935 + AT_rich Low_complexity Low_complexity 1 43 0 1478 149 42 7 chr15 32689052 32689341 -53006413 + L1MA8 LINE L1 5987 6285 -6 4081 71 3 39 chr15 32689518 32690111 -53005643 + L1PB1 LINE L1 5580 6151 0 303 317 22 126 chr15 32690376 32690647 -53005107 + L1MEc LINE L1 167 409 -5987 396 239 15 54 chr15 32690802 32690932 -53004822 - L1ME3A LINE L1 -146 6024 5900 10104 179 39 21 chr15 32691429 32692437 -53003317 + L1MA7 LINE L1 3103 4091 -2200 801 262 66 30 chr15 32692437 32692769 -53002985 - MER2 DNA MER2_type 0 344 1 10104 179 39 21 chr15 32692769 32694801 -53000953 + L1MA7 LINE L1 4091 6202 -89 362 244 22 22 chr15 32695005 32695095 -53000659 + L2 LINE L2 3168 3257 -56 359 289 22 30 chr15 32695092 32695227 -53000527 + MER5A DNA MER1_type 55 188 -1 * 3032 135 36 2 chr15 32695757 32696283 -52999471 - L1MA4 LINE L1 -11 6289 5746 305 287 134 42 chr15 32697921 32698137 -52997617 + L1MB4 LINE L1 5310 5545 -2263 754 297 20 8 chr15 32698191 32698440 -52997314 + L2 LINE L2 638 889 -2425 4708 113 24 82 chr15 32698457 32699330 -52996424 - LTR12 LTR ERV1 0 826 5 2364 193 38 34 chr15 32699346 32699957 -52995797 - pTR5 LTR ERV1 -1094 1344 732 1474 289 98 41 chr15 32700031 32700665 -52995089 + L2 LINE L2 1030 1699 -1615 1281 170 49 0 chr15 32700809 32701033 -52994721 - MER46A DNA MER2_type 0 236 2 33 0 0 0 chr15 32701105 32701138 -52994616 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr15 32701258 32701282 -52994472 + AT_rich Low_complexity Low_complexity 1 24 0 1264 152 0 0 chr15 32701356 32701554 -52994200 + L1PB1 LINE L1 1 198 -6665 * 13074 169 34 12 chr15 32701551 32705589 -52990165 + L1PB1 LINE L1 996 4945 -1922 405 0 0 0 chr15 32705589 32705634 -52990120 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 13074 169 34 12 chr15 32705634 32706986 -52988768 + L1PB1 LINE L1 4945 6266 -601 297 0 0 0 chr15 32706986 32707019 -52988735 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 378 0 0 0 chr15 32707018 32707060 -52988694 + (GA)n Simple_repeat Simple_repeat 2 43 0 13074 169 34 12 chr15 32707019 32707387 -52988367 + L1PB1 LINE L1 6266 6850 -17 318 50 0 0 chr15 32707390 32707430 -52988324 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1418 157 15 110 chr15 32707432 32707658 -52988096 + L1MB4 LINE L1 5811 5982 -198 2000 110 0 4 chr15 32707658 32707930 -52987824 - AluSq SINE Alu -42 271 1 1418 157 15 110 chr15 32707930 32708111 -52987643 + L1MB4 LINE L1 5982 6179 -1 1048 137 78 4 chr15 32708113 32708417 -52987337 + L1MB5 LINE L1 5812 6169 -2 385 321 41 7 chr15 32708495 32708766 -52986988 + L1ME LINE L1 5534 5813 -308 10332 216 54 39 chr15 32708769 32711286 -52984468 + L1MA4A LINE L1 1 2556 -4293 41526 62 9 1 chr15 32711307 32717403 -52978351 + L1PA5 LINE L1 3 6147 -7 22 35 0 0 chr15 32717406 32717435 -52978319 + AT_rich Low_complexity Low_complexity 1 29 0 1577 196 9 11 chr15 32717435 32717858 -52977896 + L1MA4A LINE L1 2587 3010 -3838 285 152 13 25 chr15 32717860 32717939 -52977815 + (TA)n Simple_repeat Simple_repeat 2 79 0 10819 179 22 73 chr15 32717939 32719703 -52976051 + L1MA4A LINE L1 2960 4812 -2193 1803 124 106 4 chr15 32719703 32719978 -52975776 + AluSx SINE Alu 1 303 -9 10819 179 22 73 chr15 32719978 32722141 -52973613 + L1MA4A LINE L1 4812 6647 -358 1743 163 38 33 chr15 32722141 32722509 -52973245 - THE1C LTR MaLR -1 374 5 10819 179 22 73 chr15 32722509 32722847 -52972907 + L1MA4A LINE L1 6647 7001 -4 28 29 0 0 chr15 32722980 32723015 -52972739 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 32723532 32723553 -52972201 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 32725560 32725588 -52970166 + AT_rich Low_complexity Low_complexity 1 28 0 4359 72 0 5 chr15 32725647 32726218 -52969536 - L1PA8 LINE L1 0 6172 5605 2401 94 3 24 chr15 32726287 32726718 -52969036 - L1PA8 LINE L1 -543 5611 5194 22 0 0 0 chr15 32776883 32776905 -52918849 + AT_rich Low_complexity Low_complexity 1 22 0 532 168 76 23 chr15 32776925 32777056 -52918698 - L1MC3 LINE L1 -49 7736 7599 396 147 40 0 chr15 32777167 32777242 -52918512 - MER2 DNA MER2_type -138 207 130 2250 211 40 6 chr15 32777242 32777744 -52918010 - Tigger1 DNA MER2_type 0 2418 1900 2568 179 39 56 chr15 32777747 32778491 -52917263 - L1MCa LINE L1 -3948 2478 1831 1140 222 0 54 chr15 32778493 32778808 -52916946 - AluY SINE Alu -1 300 3 6751 107 30 19 chr15 32778948 32779933 -52915821 + HSMAR1 DNA Mariner 292 1287 0 2073 250 45 2 chr15 32780199 32780687 -52915067 - MLT2B1 LTR ERVL 0 520 12 189 107 0 0 chr15 32780818 32780846 -52914908 + (TTATG)n Simple_repeat Simple_repeat 2 29 0 1483 160 3 52 chr15 32781151 32781458 -52914296 + AluJb SINE Alu 5 296 -16 232 195 0 0 chr15 32782205 32782246 -52913508 - Alu SINE Alu -23 280 240 1215 191 44 17 chr15 32782351 32782645 -52913109 + AluSx SINE Alu 10 311 -1 393 117 0 0 chr15 32782735 32782795 -52912959 + (TC)n Simple_repeat Simple_repeat 1 60 0 943 255 4 22 chr15 32782798 32782924 -52912830 - L1PA13 LINE L1 -10 6153 6026 189 0 0 0 chr15 32782924 32782945 -52912809 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 943 255 4 22 chr15 32782945 32783089 -52912665 - L1PA13 LINE L1 -137 6026 5888 234 0 0 0 chr15 32783584 32783610 -52912144 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 446 0 0 18 chr15 32783625 32783680 -52912074 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 551 237 0 53 chr15 32783837 32784027 -52911727 + AluSp SINE Alu 2 181 -132 4046 48 7 48 chr15 32784405 32784989 -52910765 - L1PA3 LINE L1 0 6155 5596 531 62 0 0 chr15 32784999 32785064 -52910690 + L1P LINE L1 4587 4651 -1495 425 216 0 6 chr15 32785529 32785710 -52910044 + GA-rich Low_complexity Low_complexity 1 180 0 470 275 0 6 chr15 32785732 32786069 -52909685 + GA-rich Low_complexity Low_complexity 1 334 0 1496 200 63 3 chr15 32786252 32786567 -52909187 + MER61B LTR ERV1 61 394 -31 307 341 99 56 chr15 32787166 32787650 -52908104 + L2 LINE L2 2804 3308 -5 1174 260 65 43 chr15 32788013 32788456 -52907298 + L1MCc LINE L1 18 470 -5953 253 252 8 41 chr15 32788491 32788614 -52907140 + A-rich Low_complexity Low_complexity 5 123 0 10857 189 34 33 chr15 32788811 32791081 -52904673 - L1M1 LINE L1 -4311 3254 982 4340 292 20 32 chr15 32791206 32792119 -52903635 + PRIMA41-int LTR ERV1 3628 4516 -3240 2501 125 5 35 chr15 32792119 32792327 -52903427 - THE1B LTR MaLR 0 364 170 1755 148 4 4 chr15 32792327 32792604 -52903150 + AluSx SINE Alu 23 299 -13 2501 125 5 35 chr15 32792604 32792770 -52902984 - THE1B LTR MaLR -194 170 1 4340 292 20 32 chr15 32792770 32793402 -52902352 + PRIMA41-int LTR ERV1 4516 5154 -2602 273 296 49 42 chr15 32793675 32793817 -52901937 - PRIMA41-int LTR ERV1 -7047 709 567 660 312 6 0 chr15 32794426 32794599 -52901155 - MER41D LTR ERV1 0 557 384 378 0 0 0 chr15 32795213 32795255 -52900499 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1097 114 5 42 chr15 32795259 32795452 -52900302 - AluSg/x SINE Alu -26 284 99 239 306 14 0 chr15 32796730 32796802 -52898952 + MER5A DNA MER1_type 31 103 -86 1500 160 0 8 chr15 32796863 32797107 -52898647 + AluSq SINE Alu 5 246 -67 249 244 51 13 chr15 32797125 32797203 -52898551 - MER5B DNA MER1_type -30 148 68 3743 206 9 17 chr15 32797224 32798102 -52897652 + L1 LINE L1 4190 5060 -1086 647 250 138 120 chr15 32798275 32798667 -52897087 - MLT1H1 LTR MaLR -143 424 1 281 153 14 69 chr15 32799469 32799482 -52896272 - L1P LINE L1 -795 5371 5359 2389 73 0 7 chr15 32799482 32799783 -52895971 - AluY SINE Alu -12 299 1 281 153 14 69 chr15 32799783 32799841 -52895913 - L1P LINE L1 -807 5359 5304 1618 197 42 13 chr15 32799845 32800226 -52895528 + L1P4 LINE L1 5390 5781 -385 18756 61 3 21 chr15 32800388 32803044 -52892710 + L1P LINE L1 1632 4241 -1905 14748 86 7 7 chr15 32803193 32805265 -52890489 - L1P LINE L1 -3399 2747 676 7171 132 18 39 chr15 32808402 32808688 -52887066 - L1PA7 LINE L1 -5 6149 5858 1931 132 62 3 chr15 32808688 32808976 -52886778 - AluSp SINE Alu -8 305 1 7171 132 18 39 chr15 32808976 32810755 -52884999 - L1PA7 LINE L1 -296 5858 4130 387 269 10 19 chr15 32811889 32811993 -52883761 + L1 LINE L1 3 105 -5850 504 240 0 0 chr15 32811995 32812099 -52883655 + FLAM_C SINE Alu 3 106 -37 260 253 53 27 chr15 32812099 32812174 -52883580 + L1 LINE L1 106 182 -5773 515 250 113 6 chr15 32812183 32812351 -52883403 + L1 LINE L1 4435 4620 -1414 630 332 88 9 chr15 32812385 32812725 -52883029 + L1 LINE L1 459 825 -5130 797 127 0 4 chr15 32812726 32812951 -52882803 + AluSg1 SINE Alu 3 316 0 295 200 0 0 chr15 32812954 32813004 -52882750 + L1 LINE L1 816 865 -5090 256 167 61 136 chr15 32813006 32813138 -52882616 + L1 LINE L1 3977 4098 -1936 1306 240 33 53 chr15 32813814 32814269 -52881485 - L1MA9 LINE L1 0 7731 7286 3450 213 67 23 chr15 32814381 32815725 -52880029 - L1MA9 LINE L1 -640 7091 5674 10081 216 83 13 chr15 32815863 32819305 -52876449 - L1MA9 LINE L1 -2767 4798 1119 605 203 21 56 chr15 32819444 32819587 -52876167 - LTR5 LTR ERVK -831 138 1 5972 129 42 97 chr15 32819589 32820472 -52875282 - Tigger1 DNA MER2_type -259 2159 1361 1841 140 12 58 chr15 32820472 32820800 -52874954 - AluSq SINE Alu 0 313 1 5972 129 42 97 chr15 32820800 32821138 -52874616 - Tigger1 DNA MER2_type -1057 1361 1006 532 176 29 0 chr15 32821133 32821235 -52874519 - Tigger1 DNA MER2_type -1908 510 406 * 274 291 39 22 chr15 32822287 32822469 -52873285 - LSAU Satellite Satellite -172 326 142 325 289 0 0 chr15 32822521 32822618 -52873136 + GA-rich Low_complexity Low_complexity 4 100 0 355 174 36 123 chr15 32823259 32823397 -52872357 + LSAU Satellite Satellite 2 127 -371 206 121 0 0 chr15 32824046 32824079 -52871675 + (A)n Simple_repeat Simple_repeat 1 33 0 216 260 0 0 chr15 32825910 32825960 -52869794 + GA-rich Low_complexity Low_complexity 1 50 0 182 154 0 77 chr15 32827056 32827121 -52868633 + CT-rich Low_complexity Low_complexity 2 61 0 395 224 0 99 chr15 32827451 32827603 -52868151 + LSAU Satellite Satellite 2 138 -360 234 213 32 0 chr15 32828587 32828681 -52867073 + CT-rich Low_complexity Low_complexity 1 97 0 241 310 0 0 chr15 32828701 32828772 -52866982 + CT-rich Low_complexity Low_complexity 1 71 0 504 182 41 145 chr15 32828813 32829055 -52866699 + Tigger1 DNA MER2_type 2202 2418 0 1503 160 60 26 chr15 32829741 32830010 -52865744 + AluSx SINE Alu 14 291 -21 4556 215 42 44 chr15 32832301 32833087 -52862667 - L1MA9 LINE L1 -6468 1097 312 1714 163 7 27 chr15 32833087 32833381 -52862373 - AluJb SINE Alu -24 288 1 4556 215 42 44 chr15 32833381 32833679 -52862075 - L1MA9 LINE L1 -7253 312 15 22 0 0 0 chr15 32833728 32833750 -52862004 + AT_rich Low_complexity Low_complexity 1 22 0 3356 254 60 73 chr15 32833975 32834835 -52860919 - L1PA12 LINE L1 -6379 1202 359 2258 108 3 0 chr15 32834835 32835140 -52860614 + AluSp SINE Alu 1 306 -7 3356 254 60 73 chr15 32835140 32835455 -52860299 - L1PA12 LINE L1 -7222 359 42 433 289 98 38 chr15 32836036 32836302 -52859452 + L1ME4a LINE L1 5672 5953 -168 611 307 170 34 chr15 32836968 32837688 -52858066 - L2 LINE L2 -1 3312 2478 422 324 57 9 chr15 32838017 32838227 -52857527 - LTR33 LTR ERVL -245 276 57 279 271 271 0 chr15 32838299 32838432 -52857322 - L2 LINE L2 -845 2469 2301 180 237 85 17 chr15 32839651 32839710 -52856044 + L3 LINE CR1 419 481 -1096 3862 138 14 34 chr15 32841686 32842403 -52853351 + L1PA15 LINE L1 5458 6160 -5 21 0 0 0 chr15 32843787 32843808 -52851946 + AT_rich Low_complexity Low_complexity 1 21 0 373 244 79 8 chr15 32843813 32843940 -52851814 + MER104 DNA Tc2 25 160 -20 1701 176 3 7 chr15 32844029 32844318 -52851436 + AluJb SINE Alu 1 288 -24 3756 248 61 54 chr15 32844331 32845863 -52849891 - L1ME1 LINE L1 -17 6149 4598 2198 95 3 7 chr15 32845863 32846158 -52849596 + AluSp SINE Alu 1 294 -19 3756 248 61 54 chr15 32846158 32847263 -52848491 - L1ME1 LINE L1 -1568 4598 3502 768 225 11 47 chr15 32847415 32847606 -52848148 - MER20 DNA MER1_type -34 185 2 484 324 96 14 chr15 32847609 32847828 -52847926 + MIR SINE MIR 24 260 -2 866 340 53 37 chr15 32849559 32850214 -52845540 + L1M2a LINE L1 1548 2213 -4955 613 254 0 0 chr15 32850216 32850338 -52845416 - FLAM_A SINE Alu -19 123 2 2695 263 64 24 chr15 32850360 32851772 -52843982 + L1MA8 LINE L1 2314 3780 -3785 1074 101 0 22 chr15 32851772 32852046 -52843708 + THE1B LTR MaLR 1 364 0 1158 239 10 10 chr15 32852048 32852362 -52843392 + L1MA8 LINE L1 3776 4089 -3476 4333 189 35 34 chr15 32852369 32853790 -52841964 + L1MA8 LINE L1 6225 7655 -55 2961 172 19 45 chr15 32853790 32854418 -52841336 + LTR9 LTR ERV1 1 612 0 4333 189 35 34 chr15 32854418 32854475 -52841279 + L1MA8 LINE L1 7655 7710 0 3260 253 61 77 chr15 32854752 32855076 -52840678 + L1PA12 LINE L1 42 370 -7211 2212 90 3 19 chr15 32855076 32855387 -52840367 - AluSp SINE Alu -7 306 1 3260 253 61 77 chr15 32855387 32856242 -52839512 + L1PA12 LINE L1 370 1202 -6379 22 0 0 0 chr15 32856463 32856485 -52839269 + AT_rich Low_complexity Low_complexity 1 22 0 18095 180 31 35 chr15 32856534 32856841 -52838913 + L1M1 LINE L1 15 322 -7399 1714 163 7 27 chr15 32856841 32857135 -52838619 + AluJb SINE Alu 1 288 -24 18095 180 31 35 chr15 32857135 32861698 -52834056 + L1M1 LINE L1 322 4900 -2821 1917 153 118 23 chr15 32861698 32862089 -52833665 - MSTA LTR MaLR 0 428 1 8514 177 29 12 chr15 32862089 32863713 -52832041 - MSTA-int LTR MaLR 0 1651 1 1893 146 159 11 chr15 32863713 32864084 -52831670 - MSTA LTR MaLR 0 428 3 18095 180 31 35 chr15 32864084 32864413 -52831341 + L1M1 LINE L1 4898 5227 -2494 1625 190 0 26 chr15 32864413 32864718 -52831036 + AluJb SINE Alu 1 297 -15 18095 180 31 35 chr15 32864718 32866727 -52829027 + L1M1 LINE L1 5227 7195 -526 198 0 0 0 chr15 32866926 32866948 -52828806 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1422 178 30 28 chr15 32867691 32868235 -52827519 + L1PB4 LINE L1 4983 5535 -743 2081 177 3 8 chr15 32868235 32868607 -52827147 + L1PB4 LINE L1 5769 6156 0 216 226 24 24 chr15 32868609 32868693 -52827061 + GA-rich Low_complexity Low_complexity 2 85 0 877 341 62 44 chr15 32868713 32869558 -52826196 + L2 LINE L2 2186 3047 -225 1890 128 30 20 chr15 32869628 32869925 -52825829 - AluSx SINE Alu -12 300 1 357 225 0 0 chr15 32870604 32870693 -52825061 + A-rich Low_complexity Low_complexity 1 89 0 365 307 64 35 chr15 32871562 32871764 -52823990 + MIR SINE MIR 1 208 -54 207 192 13 103 chr15 32874615 32874693 -52821061 + MIR SINE MIR 72 142 -120 357 24 0 0 chr15 32875616 32875658 -52820096 + (CA)n Simple_repeat Simple_repeat 2 43 0 429 256 8 39 chr15 32876075 32876204 -52819550 - L2 LINE L2 0 3313 3189 368 305 69 66 chr15 32876501 32876819 -52818935 + L1ME4a LINE L1 5645 5963 -158 29 77 0 0 chr15 32876891 32876943 -52818811 + AT_rich Low_complexity Low_complexity 1 52 0 325 307 72 72 chr15 32877307 32877626 -52818128 + L1ME4a LINE L1 5645 5963 -158 30 59 0 0 chr15 32877701 32877752 -52818002 + AT_rich Low_complexity Low_complexity 1 51 0 740 317 98 28 chr15 32878294 32878619 -52817135 - LTR33 LTR ERVL -168 353 6 1779 131 4 41 chr15 32879553 32879940 -52815814 - MER1B DNA MER1_type 0 333 1 491 347 57 20 chr15 32879973 32880221 -52815533 - MIR SINE MIR 0 262 6 259 307 0 13 chr15 32881715 32881790 -52813964 - MIR SINE MIR -181 81 8 26 30 0 0 chr15 32881807 32881840 -52813914 + AT_rich Low_complexity Low_complexity 1 33 0 929 200 5 10 chr15 32882581 32882776 -52812978 + L1PB1 LINE L1 1 194 -6669 13560 191 18 20 chr15 32882776 32883689 -52812065 + L1PB1 LINE L1 995 1909 -4958 1693 131 4 12 chr15 32883689 32883948 -52811806 + AluSc SINE Alu 39 295 -14 13560 191 18 20 chr15 32883948 32888684 -52807070 + L1PB1 LINE L1 1909 6866 -1 645 108 18 9 chr15 32888700 32888811 -52806943 + L1MB3 LINE L1 6065 6176 -7 195 299 30 15 chr15 32888957 32889024 -52806730 - L2 LINE L2 -6 3307 3240 480 305 76 96 chr15 32889895 32890396 -52805358 - L2 LINE L2 -535 2779 2289 1131 254 27 12 chr15 32890798 32891129 -52804625 - L1MA9 LINE L1 -38 6274 5939 298 314 78 6 chr15 32891279 32891636 -52804118 + L1M4 LINE L1 2239 2621 -3525 * 753 127 0 76 chr15 32891634 32891661 -52804093 + L1 LINE L1 4895 4922 -1224 2372 61 3 7 chr15 32891661 32891955 -52803799 + AluY SINE Alu 1 293 -18 753 127 0 76 chr15 32891955 32892084 -52803670 + L1 LINE L1 4922 5039 -1107 316 345 26 36 chr15 32892084 32892278 -52803476 + L1M4 LINE L1 2615 2806 -3340 607 320 21 51 chr15 32892278 32892609 -52803145 - MLT1I LTR MaLR -19 390 70 489 287 66 47 chr15 32892906 32893637 -52802117 + L1M4 LINE L1 4617 5361 -785 1429 261 33 72 chr15 32893653 32894648 -52801106 + L1MC4a LINE L1 6938 7802 -6 650 208 23 95 chr15 32894636 32894900 -52800854 + L1MEc LINE L1 1832 2076 -4320 * 1331 209 3 20 chr15 32895423 32895720 -52800034 - L1MA7 LINE L1 -403 5888 5597 901 207 23 5 chr15 32895725 32895942 -52799812 - L1MA7 LINE L1 -826 5320 5100 1385 188 71 33 chr15 32895944 32896255 -52799499 + L1MA7 LINE L1 5905 6234 -57 315 0 0 0 chr15 32896255 32896290 -52799464 + (TG)n Simple_repeat Simple_repeat 2 36 0 1385 188 71 33 chr15 32896290 32896345 -52799409 + L1MA7 LINE L1 6234 6285 -6 70 53 0 0 chr15 32896781 32896876 -52798878 + AT_rich Low_complexity Low_complexity 1 95 0 1579 158 140 29 chr15 32897011 32897396 -52798358 - MSTA LTR MaLR 0 428 1 541 271 65 49 chr15 32897448 32897876 -52797878 + L1MEc LINE L1 1262 1696 -4700 2163 113 0 34 chr15 32898239 32898559 -52797195 + AluSg SINE Alu 1 309 -1 261 243 117 18 chr15 32898757 32898868 -52796886 + L1ME1 LINE L1 5980 6101 -65 1872 257 110 18 chr15 32898932 32899721 -52796033 + L1MC4 LINE L1 6935 7796 -246 308 228 22 22 chr15 32899943 32900035 -52795719 + L1MC4a LINE L1 5812 5903 -1905 630 271 49 33 chr15 32900160 32900453 -52795301 + L1MC4a LINE L1 6596 6859 -949 231 36 0 0 chr15 32900454 32900482 -52795272 + (A)n Simple_repeat Simple_repeat 1 28 0 334 280 92 19 chr15 32900762 32900924 -52794830 + MIR SINE MIR 51 224 -38 432 244 57 43 chr15 32901156 32901350 -52794404 + L1MC5 LINE L1 6661 6860 -949 231 36 0 0 chr15 32901351 32901379 -52794375 + (A)n Simple_repeat Simple_repeat 1 28 0 371 319 38 13 chr15 32901663 32901820 -52793934 + MIR SINE MIR 64 224 -38 214 255 88 69 chr15 32901905 32902007 -52793747 - L2 LINE L2 -1 3271 3168 2355 90 3 3 chr15 32902014 32902325 -52793429 - AluY SINE Alu 0 311 1 333 0 0 0 chr15 32902451 32902488 -52793266 + (A)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr15 32903679 32903701 -52792053 + AT_rich Low_complexity Low_complexity 1 22 0 573 247 34 39 chr15 32903732 32903910 -52791844 - MER5B DNA MER1_type 0 178 2 1675 145 71 14 chr15 32905614 32905897 -52789857 + AluSx SINE Alu 3 301 -11 401 268 48 44 chr15 32905955 32906118 -52789636 + L1ME1 LINE L1 6012 6178 0 1690 139 11 8 chr15 32907800 32908066 -52787688 + AluSx SINE Alu 14 280 -32 243 333 0 0 chr15 32908075 32908144 -52787610 + GA-rich Low_complexity Low_complexity 2 70 0 359 134 0 15 chr15 32908371 32908438 -52787316 + L1MA1 LINE L1 6237 6302 0 2017 116 14 3 chr15 32909023 32909307 -52786447 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr15 32909635 32909675 -52786079 + AT_rich Low_complexity Low_complexity 1 40 0 2241 144 56 3 chr15 32910420 32910794 -52784960 + MER61B LTR ERV1 1 394 -31 583 322 94 58 chr15 32911402 32911889 -52783865 + L2 LINE L2 2804 3308 -5 203 229 161 25 chr15 32911892 32912010 -52783744 - MIR SINE MIR -63 199 66 1310 243 60 49 chr15 32912254 32912702 -52783052 + L1MCc LINE L1 18 470 -5953 1629 251 90 14 chr15 32912814 32913377 -52782377 + L1MCc LINE L1 963 1566 -4856 216 384 0 0 chr15 32913701 32913774 -52781980 + MIR SINE MIR 67 139 -69 273 320 52 10 chr15 32914043 32914140 -52781614 + MIR3 SINE MIR 92 192 -16 42422 43 2 12 chr15 32914144 32920359 -52775395 + L1PA4 LINE L1 2 6152 -3 2852 189 41 12 chr15 32921157 32921516 -52774238 - MER6A DNA MER2_type -260 605 221 315 0 0 0 chr15 32921516 32921551 -52774203 + (CA)n Simple_repeat Simple_repeat 1 35 0 2852 189 41 12 chr15 32921551 32921779 -52773975 - MER6A DNA MER2_type -644 221 1 190 154 0 39 chr15 32922907 32922959 -52772795 + CT-rich Low_complexity Low_complexity 1 50 0 5698 139 42 33 chr15 32923044 32924155 -52771599 - MER52C LTR ERV1 0 1278 158 817 182 0 23 chr15 32925971 32926147 -52769607 - L1MA3 LINE L1 0 6305 6134 465 318 95 11 chr15 32926380 32926559 -52769195 - LTR16B LTR ERVL -270 194 1 1613 229 56 85 chr15 32927799 32928460 -52767294 + Charlie7 DNA MER1_type 499 1133 -1479 1883 109 0 77 chr15 32928460 32928772 -52766982 - AluSp SINE Alu -25 288 1 1613 229 56 85 chr15 32928772 32928947 -52766807 + Charlie7 DNA MER1_type 1133 1311 -1301 228 200 0 0 chr15 32929680 32929725 -52766029 - L2 LINE L2 -1 3312 3268 229 305 21 11 chr15 32929772 32929867 -52765887 + L1MC/D LINE L1 5665 5760 -2048 25 0 0 0 chr15 32929972 32929997 -52765757 + AT_rich Low_complexity Low_complexity 1 25 0 1507 255 88 34 chr15 32929997 32930694 -52765060 + Charlie7 DNA MER1_type 1399 2132 -480 495 297 32 16 chr15 32933342 32933527 -52762227 - LTR33 LTR ERVL -8 513 326 261 352 0 16 chr15 32933650 32933775 -52761979 - LTR33 LTR ERVL -373 148 26 25 37 0 0 chr15 32933856 32933883 -52761871 + AT_rich Low_complexity Low_complexity 1 27 0 259 299 62 55 chr15 32934166 32934587 -52761167 - HAL1b LINE L1 -921 427 4 23 33 0 0 chr15 32935906 32935936 -52759818 + AT_rich Low_complexity Low_complexity 1 30 0 384 302 126 11 chr15 32935936 32936118 -52759636 - L1MEc LINE L1 -4128 2268 2066 24 53 0 0 chr15 32936212 32936250 -52759504 + AT_rich Low_complexity Low_complexity 1 38 0 228 347 22 48 chr15 32936262 32936530 -52759224 - L1MEc LINE L1 -4580 1816 1556 232 317 0 12 chr15 32936894 32936976 -52758778 - L1MEc LINE L1 -5101 1104 1024 5592 120 21 13 chr15 32937339 32938256 -52757498 - L1MA2 LINE L1 0 7723 6800 2389 112 9 37 chr15 32938256 32938685 -52757069 + MER11A LTR ERVK 850 1266 0 6732 176 21 13 chr15 32938716 32940092 -52755662 - L1MA2 LINE L1 -862 6703 5317 * 11800 159 30 19 chr15 32940084 32942957 -52752797 - L1MA2 LINE L1 -3116 4449 1540 1220 183 21 13 chr15 32942959 32943277 -52752477 + MER52A LTR ERV1 1391 1755 0 727 216 13 13 chr15 32943278 32943431 -52752323 - L1MA2 LINE L1 -7229 336 184 347 102 0 17 chr15 32943433 32943525 -52752229 + L1PA7 LINE L1 6092 6154 0 2333 308 248 19 chr15 32943599 32944702 -52751052 - L2 LINE L2 -6 3307 2458 1605 197 16 19 chr15 32944702 32945068 -52750686 + MLT1A1 LTR MaLR 1 365 0 2333 308 248 19 chr15 32945068 32946057 -52749697 - L2 LINE L2 -855 2458 727 22 35 0 0 chr15 32997088 32997117 -52698637 + AT_rich Low_complexity Low_complexity 1 29 0 190 175 25 25 chr15 32997125 32997165 -52698589 - L3 LINE CR1 -19 1558 1519 690 258 81 54 chr15 32997320 32997378 -52698376 + MLT1J LTR MaLR 91 146 -365 1356 159 95 58 chr15 32997378 32997705 -52698049 + MER44D DNA MER2_type 1 609 0 690 258 81 54 chr15 32997705 32997998 -52697756 + MLT1J LTR MaLR 146 488 -23 310 380 34 77 chr15 32998056 32998498 -52697256 - L2 LINE L2 -22 3250 2828 526 359 43 17 chr15 32998660 32998894 -52696860 - MIR SINE MIR -7 255 16 252 177 16 32 chr15 32999145 32999207 -52696547 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 206 167 93 37 chr15 32999208 32999262 -52696492 - MIR3 SINE MIR -10 198 142 23 0 0 0 chr15 32999988 33000011 -52695743 + AT_rich Low_complexity Low_complexity 1 23 0 371 232 116 18 chr15 33000836 33000948 -52694806 - MER67D LTR ERV1 -8 506 384 1016 186 14 124 chr15 33000954 33001244 -52694510 - MER67D LTR ERV1 -256 258 1 303 296 98 0 chr15 33001401 33001533 -52694221 + L1M4 LINE L1 2678 2822 -3324 25 31 0 0 chr15 33001533 33001565 -52694189 + AT_rich Low_complexity Low_complexity 1 32 0 483 276 83 26 chr15 33002068 33002127 -52693627 + MLT1J2 LTR MaLR 37 91 -359 3955 103 5 0 chr15 33002127 33002678 -52693076 - MER41A LTR ERV1 0 554 1 483 276 83 26 chr15 33002678 33002810 -52692944 + MLT1J2 LTR MaLR 91 239 -211 254 114 0 0 chr15 33003241 33003276 -52692478 + MLT2B2 LTR ERVL 1 35 -480 717 124 8 47 chr15 33003276 33003405 -52692349 - MSTA LTR MaLR 0 428 305 274 95 0 0 chr15 33003419 33003461 -52692293 - L1MA3 LINE L1 -132 6173 6132 841 88 0 0 chr15 33003461 33003574 -52692180 + L1MA1 LINE L1 6184 6296 -6 2620 179 32 54 chr15 33003578 33004138 -52691616 - Tigger1 DNA MER2_type -1864 554 7 298 226 0 0 chr15 33004150 33004212 -52691542 + L1MA5 LINE L1 6235 6296 -4 320 306 24 24 chr15 33004728 33004852 -52690902 + MIR SINE MIR 139 262 0 2103 132 3 0 chr15 33004877 33005172 -52690582 - AluSx SINE Alu -15 297 2 1261 251 98 21 chr15 33005395 33005773 -52689981 - MLT1E2 LTR MaLR -182 444 38 216 135 0 0 chr15 33005823 33005860 -52689894 + (TAA)n Simple_repeat Simple_repeat 2 38 0 660 266 87 5 chr15 33005863 33006047 -52689707 - MIR SINE MIR -33 229 31 394 333 98 51 chr15 33006230 33006751 -52689003 - L2 LINE L2 -254 3018 2480 530 239 134 0 chr15 33007017 33007159 -52688595 + MER5B DNA MER1_type 2 162 -16 300 286 38 8 chr15 33007964 33008015 -52687739 - L1MA10 LINE L1 -23 6311 6261 1177 256 151 28 chr15 33008015 33008518 -52687236 - L1ME1 LINE L1 -66 6100 5536 735 333 91 38 chr15 33008523 33009126 -52686628 - HAL1 LINE L1 -1837 670 36 291 313 203 9 chr15 33009531 33009758 -52685996 + L3 LINE CR1 1152 1422 -155 1805 153 0 49 chr15 33009940 33010267 -52685487 + AluJb SINE Alu 1 311 -1 317 65 0 0 chr15 33010762 33010808 -52684946 - L1PA7 LINE L1 0 6154 6109 2307 172 62 22 chr15 33011929 33012194 -52683560 - L1MB8 LINE L1 -6 6172 5919 2356 126 16 8 chr15 33012194 33012566 -52683188 - THE1C LTR MaLR 0 375 1 2307 172 62 22 chr15 33012566 33012836 -52682918 - L1MB8 LINE L1 -259 5919 5616 433 239 218 0 chr15 33013126 33013323 -52682431 - L1ME LINE L1 -309 5812 5573 509 199 172 33 chr15 33014481 33014632 -52681122 + FAM SINE Alu 1 172 -3 425 272 169 10 chr15 33015609 33015804 -52679950 + MIR SINE MIR 28 253 -9 313 117 242 8 chr15 33016738 33016866 -52678888 - Charlie1 DNA MER1_type -71 2690 2533 4446 187 24 35 chr15 33016887 33017982 -52677772 - L1MA9 LINE L1 -38 7693 6610 1529 205 57 3 chr15 33018008 33018374 -52677380 - L1MA9 LINE L1 -2182 5383 4998 1089 279 0 0 chr15 33018428 33018729 -52677025 - AluY SINE Alu 0 301 1 225 273 0 0 chr15 33018730 33018829 -52676925 - L1P LINE L1 -2183 3963 3865 1125 75 0 0 chr15 33018941 33019075 -52676679 - AluY SINE Alu -177 134 1 10126 126 25 2 chr15 33019084 33020763 -52674991 - L1P LINE L1 -2191 3955 2239 5924 138 12 0 chr15 33020769 33021697 -52674057 + L1P LINE L1 3977 4915 -1231 1112 204 40 9 chr15 33021710 33022038 -52673716 - L1MA9 LINE L1 -2670 4895 4558 412 225 144 0 chr15 33022061 33022172 -52673582 - L1MA9 LINE L1 -3404 4161 4035 198 70 0 88 chr15 33022179 33022236 -52673518 + (TCTCCC)n Simple_repeat Simple_repeat 2 53 0 9190 71 51 8 chr15 33022237 33023483 -52672271 + SVA Other Other 2 1301 -85 3683 100 4 10 chr15 33023584 33024092 -52671662 + SVA Other Other 882 1386 0 1693 234 42 11 chr15 33024129 33024809 -52670945 - L1MA9 LINE L1 -3522 4043 3344 254 250 60 24 chr15 33025029 33025113 -52670641 - L2 LINE L2 0 3313 3227 407 242 78 31 chr15 33025185 33025313 -52670441 + MIR SINE MIR 79 212 -50 23 33 0 0 chr15 33025562 33025592 -52670162 + AT_rich Low_complexity Low_complexity 1 30 0 4875 151 34 18 chr15 33026643 33027559 -52668195 + L1MA4A LINE L1 5368 6298 -5 817 271 60 11 chr15 33028666 33028947 -52666807 - LTR16A LTR ERVL 0 450 156 387 330 21 14 chr15 33029535 33029865 -52665889 - ERVL LTR ERVL -765 4999 4605 3817 148 24 29 chr15 33031663 33032384 -52663370 - LTR62 LTR ERVK -2 717 1 466 329 0 8 chr15 33032907 33033055 -52662699 - MIR3 SINE MIR -48 160 13 877 236 148 101 chr15 33033625 33034494 -52661260 - L1MC4 LINE L1 -6 8036 7122 623 250 102 5 chr15 33034494 33034690 -52661064 - MER58C DNA MER1_type 0 215 1 877 236 148 101 chr15 33034690 33034722 -52661032 - L1MC4 LINE L1 -920 7122 7093 258 32 0 0 chr15 33034733 33034764 -52660990 + (TG)n Simple_repeat Simple_repeat 2 32 0 957 197 14 34 chr15 33034907 33035115 -52660639 - MER3 DNA MER1_type 0 209 6 4276 138 14 1 chr15 33035348 33036017 -52659737 - L1PA15 LINE L1 -4 6161 5485 1114 130 66 15 chr15 33036119 33036378 -52659376 - L1PA15 LINE L1 -687 5478 5180 24 0 0 0 chr15 33036378 33036402 -52659352 + AT_rich Low_complexity Low_complexity 1 24 0 14399 163 42 9 chr15 33036411 33041530 -52654224 - L1MA1 LINE L1 -4 7717 2418 6194 159 19 6 chr15 33041553 33043398 -52652356 - L1PB1 LINE L1 -6 6145 4275 * 6350 191 108 5 chr15 33043395 33044790 -52650964 - L1MA1 LINE L1 -5144 2421 521 1021 186 0 0 chr15 33044790 33044957 -52650797 + AluJb SINE Alu 133 299 -13 1955 245 24 39 chr15 33044957 33045492 -52650262 - L1MA1 LINE L1 -7031 534 8 7948 214 10 4 chr15 33045495 33047219 -52648535 - L1P LINE L1 -958 5188 3455 3632 207 17 7 chr15 33047270 33048273 -52647481 - L1PA13 LINE L1 -4223 2574 1551 2489 241 38 43 chr15 33048291 33048902 -52646852 - L1PA13 LINE L1 -6177 610 3 1039 233 44 25 chr15 33048921 33049086 -52646668 - AluJo SINE Alu -16 296 123 239 0 32 0 chr15 33049086 33049117 -52646637 + (TTTTA)n Simple_repeat Simple_repeat 5 36 0 1039 233 44 25 chr15 33049117 33049226 -52646528 - AluJo SINE Alu -189 123 17 1129 125 0 24 chr15 33049280 33049448 -52646306 + AluSg/x SINE Alu 135 298 -14 267 197 33 0 chr15 33049451 33049512 -52646242 + L1MA9 LINE L1 6229 6291 -21 247 65 43 0 chr15 33049541 33049587 -52646167 + (TA)n Simple_repeat Simple_repeat 1 48 0 40012 72 4 4 chr15 33049620 33055758 -52639996 - L1PA5 LINE L1 -5 6149 11 539 333 42 42 chr15 33055816 33056170 -52639584 - L1M4 LINE L1 -3611 2535 2182 2132 121 0 0 chr15 33057348 33057628 -52638126 - AluSg SINE Alu -30 280 1 28 29 0 0 chr15 33057945 33057980 -52637774 + AT_rich Low_complexity Low_complexity 1 35 0 4292 170 30 19 chr15 33057980 33058867 -52636887 - L1MA6 LINE L1 0 6942 6046 1488 182 69 90 chr15 33058867 33059429 -52636325 - MLT2A2 LTR ERVL 0 554 1 10543 219 25 62 chr15 33059434 33062530 -52633224 - L1MA6 LINE L1 -743 6045 3066 493 206 48 12 chr15 33062521 33062684 -52633070 - L1MA6 LINE L1 -6535 254 3 * 772 232 30 5 chr15 33062680 33062878 -52632876 - L1 LINE L1 -1827 5738 5536 324 221 13 0 chr15 33062926 33063003 -52632751 - L1 LINE L1 -2024 5541 5464 * 4248 236 73 53 chr15 33062995 33064997 -52630757 - L1 LINE L1 -2797 4768 2971 2001 189 65 5 chr15 33064997 33065399 -52630355 + MSTB LTR MaLR 1 426 0 4248 236 73 53 chr15 33065399 33066293 -52629461 - L1 LINE L1 -4594 2971 2097 1394 300 89 32 chr15 33066389 33066938 -52628816 - L1 LINE L1 -6151 1415 828 261 0 0 0 chr15 33066938 33066967 -52628787 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1394 300 89 32 chr15 33066967 33067014 -52628740 - L1 LINE L1 -6738 828 785 211 342 38 0 chr15 33067551 33067630 -52628124 + MIR SINE MIR 64 145 -63 649 323 201 29 chr15 33067819 33068073 -52627681 + L2 LINE L2 1293 1502 -1812 1950 150 29 47 chr15 33068073 33068453 -52627301 + THE1C LTR MaLR 1 373 -2 649 323 201 29 chr15 33068453 33068883 -52626871 + L2 LINE L2 1502 2095 -1219 1231 220 50 73 chr15 33068979 33069461 -52626293 - LTR53 LTR ERVL -12 507 37 842 310 65 49 chr15 33069465 33069991 -52625763 + L2 LINE L2 2194 2727 -587 342 340 156 35 chr15 33070612 33071147 -52624607 + L2 LINE L2 2716 3312 -1 923 192 206 9 chr15 33071210 33071604 -52624150 - Charlie1b DNA MER1_type 0 523 44 238 308 51 51 chr15 33071738 33071855 -52623899 + MIR3 SINE MIR 39 155 -53 721 221 123 6 chr15 33072898 33073061 -52622693 - MER5A DNA MER1_type -6 183 2 296 230 54 0 chr15 33073134 33073208 -52622546 + MIR SINE MIR 72 149 -113 2215 102 0 10 chr15 33073390 33073695 -52622059 + AluSg1 SINE Alu 1 302 -7 1420 290 145 47 chr15 33074118 33074890 -52620864 + L2 LINE L2 80 927 -2387 324 102 0 0 chr15 33075862 33075911 -52619843 + (T)n Simple_repeat Simple_repeat 1 49 0 460 332 75 22 chr15 33075945 33076171 -52619583 + MIR SINE MIR 9 246 -16 2376 95 0 0 chr15 33076939 33077235 -52618519 + AluSg SINE Alu 1 296 -14 2698 118 9 14 chr15 33077730 33078161 -52617593 + L1MA3 LINE L1 5877 6305 0 37 0 0 0 chr15 33078354 33078391 -52617363 + AT_rich Low_complexity Low_complexity 1 37 0 317 165 25 25 chr15 33078538 33078617 -52617137 + L1MC2 LINE L1 6255 6333 -11 1735 202 8 16 chr15 33079223 33079452 -52616302 - MLT1A1 LTR MaLR -2 363 134 1560 155 188 25 chr15 33079452 33079820 -52615934 + MSTA LTR MaLR 1 428 0 8940 143 24 41 chr15 33079822 33081425 -52614329 + MSTA-int LTR MaLR 3 1578 -2 1469 182 168 32 chr15 33081427 33081801 -52613953 + MSTA LTR MaLR 1 425 -3 1735 202 8 16 chr15 33081801 33081931 -52613823 - MLT1A1 LTR MaLR -233 132 1 458 218 0 27 chr15 33082560 33082670 -52613084 + MLT1I LTR MaLR 303 409 0 22 56 0 0 chr15 33083297 33083333 -52612421 + AT_rich Low_complexity Low_complexity 1 36 0 283 250 120 0 chr15 33083440 33083548 -52612206 - MIR SINE MIR -50 212 92 302 253 13 0 chr15 33084875 33084954 -52610800 + MIR3 SINE MIR 109 188 -20 2166 133 0 0 chr15 33085641 33085941 -52609813 - AluSx SINE Alu -12 300 1 223 348 82 70 chr15 33086008 33086448 -52609306 + L2 LINE L2 2376 2820 -494 1768 171 34 8 chr15 33086501 33086587 -52609167 + MLT2D LTR ERVL 3 85 -329 663 169 0 23 chr15 33086587 33086717 -52609037 + L1PB4 LINE L1 6028 6154 -2 1768 171 34 8 chr15 33086717 33086981 -52608773 + MLT2D LTR ERVL 85 362 -52 371 275 83 0 chr15 33087631 33087740 -52608014 - MIR SINE MIR -66 142 25 563 258 50 6 chr15 33088234 33088393 -52607361 - MIR SINE MIR -13 249 84 1978 203 18 24 chr15 33089066 33089524 -52606230 - L1MA6 LINE L1 -5 7316 6862 4557 161 48 3 chr15 33089528 33090460 -52605294 - L1MA6 LINE L1 -1197 5970 4997 3320 169 42 57 chr15 33090460 33091247 -52604507 - LTR1 LTR ERV1 0 785 11 6084 234 57 14 chr15 33091261 33093318 -52602436 - L1MA6 LINE L1 -2168 4999 2851 269 347 28 7 chr15 33093475 33093619 -52602135 - L1MA6 LINE L1 -7018 150 4 1239 174 16 8 chr15 33094182 33094440 -52601314 + L1MD3 LINE L1 7736 7995 0 322 242 11 11 chr15 33094448 33094543 -52601211 + L1MC4 LINE L1 6494 6588 -1454 387 344 25 19 chr15 33095188 33095348 -52600406 + MIR3 SINE MIR 40 200 -8 516 296 68 0 chr15 33095411 33095587 -52600167 - MIR SINE MIR -34 228 41 363 266 18 18 chr15 33095589 33095702 -52600052 - L2 LINE L2 -749 2565 2453 264 238 16 0 chr15 33096317 33096380 -52599374 + MER117 DNA MER1_type 1 64 -133 262 297 33 44 chr15 33096478 33096569 -52599185 + L3 LINE CR1 1371 1460 -117 261 242 50 17 chr15 33096620 33096740 -52599014 + L1ME4a LINE L1 5994 6117 -4 768 217 24 6 chr15 33097198 33097364 -52598390 + MIR SINE MIR 69 237 -25 210 283 38 0 chr15 33097332 33097385 -52598369 + L2 LINE L2 3210 3264 -8 * 2226 105 0 3 chr15 33097759 33098053 -52597701 - AluSg SINE Alu -17 293 1 29 0 0 0 chr15 33098298 33098327 -52597427 + AT_rich Low_complexity Low_complexity 1 29 0 2163 89 3 80 chr15 33099999 33100326 -52595428 - AluSp SINE Alu -11 302 1 364 293 167 32 chr15 33100424 33100670 -52595084 + L2 LINE L2 2633 2911 -403 831 231 18 83 chr15 33100689 33101026 -52594728 + MLT2C1 LTR ERVL 17 331 -66 1826 197 47 5 chr15 33101139 33101525 -52594229 + MSTB LTR MaLR 1 402 -24 778 277 136 19 chr15 33101546 33101856 -52593898 + L2 LINE L2 2967 3312 -1 1785 201 0 0 chr15 33102582 33102891 -52592863 + AluJb SINE Alu 1 309 -3 380 300 88 6 chr15 33103287 33103447 -52592307 + L1MC/D LINE L1 5069 5241 -905 400 330 83 16 chr15 33103511 33103823 -52591931 + L1MC/D LINE L1 5313 5645 -2163 376 293 133 48 chr15 33105247 33105435 -52590319 + MIR SINE MIR 26 229 -33 889 149 60 30 chr15 33106321 33106489 -52589265 + FRAM SINE Alu 1 166 -10 382 244 118 0 chr15 33107257 33107376 -52588378 - MIR SINE MIR -6 256 124 630 270 42 5 chr15 33107449 33107638 -52588116 + MIR SINE MIR 12 207 -55 252 284 48 25 chr15 33107871 33107963 -52587791 - MIR SINE MIR -71 137 45 1976 159 108 16 chr15 33108008 33108265 -52587489 - MLT1C LTR MaLR 0 467 235 414 0 0 0 chr15 33108265 33108311 -52587443 + (TG)n Simple_repeat Simple_repeat 2 47 0 1976 159 108 16 chr15 33108311 33108481 -52587273 - MLT1C LTR MaLR -232 235 1 1847 215 20 16 chr15 33109112 33109558 -52586196 + L1MA10 LINE L1 5874 6321 -13 617 291 48 65 chr15 33109578 33109808 -52585946 - MIR SINE MIR -19 243 18 367 364 120 7 chr15 33110229 33110520 -52585234 - L1 LINE L1 -1127 5019 4696 3149 184 45 106 chr15 33110546 33111513 -52584241 - MER21A LTR ERV1 -6 925 17 2131 135 3 3 chr15 33111658 33111969 -52583785 + AluSq SINE Alu 3 313 0 440 285 37 48 chr15 33112115 33112385 -52583369 - L1 LINE L1 -2800 3346 3080 21 71 0 0 chr15 33112416 33112458 -52583296 + AT_rich Low_complexity Low_complexity 1 42 0 2219 130 0 0 chr15 33112629 33112937 -52582817 - AluSg SINE Alu -2 308 1 348 24 0 0 chr15 33113932 33113973 -52581781 + (CA)n Simple_repeat Simple_repeat 1 41 0 477 339 76 5 chr15 33114761 33114985 -52580769 + MIR SINE MIR 13 252 -10 2458 76 0 3 chr15 33115635 33115939 -52579815 - AluY SINE Alu -8 303 1 28608 113 11 68 chr15 33116600 33121750 -52574004 + L1PA7 LINE L1 1 4687 -1467 2399 90 0 6 chr15 33121750 33122061 -52573693 + AluSg SINE Alu 1 309 -1 28608 113 11 68 chr15 33122061 33123449 -52572305 + L1PA7 LINE L1 4687 6153 -1 188 57 0 57 chr15 33123752 33123787 -52571967 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 311 220 192 10 chr15 33123956 33124156 -52571598 - MER5C DNA MER1_type -2 322 14 433 238 112 24 chr15 33124175 33124477 -52571277 + L1MEd LINE L1 1016 1381 -4865 1535 155 48 16 chr15 33124496 33124806 -52570948 + L1MC/D LINE L1 5290 5609 -724 825 281 98 39 chr15 33124819 33125260 -52570494 + L1M3b LINE L1 1219 1685 -5811 6365 225 57 16 chr15 33125677 33128935 -52566819 + L1M3b LINE L1 2078 5409 -2156 1094 293 48 9 chr15 33128948 33129473 -52566281 + L1PBa LINE L1 7 551 -6312 225 287 85 57 chr15 33129504 33129786 -52565968 - HAL1 LINE L1 -963 1544 1255 226 269 192 13 chr15 33131370 33131448 -52564306 - MIR SINE MIR -75 133 42 651 238 122 0 chr15 33131689 33131836 -52563918 - FAM SINE Alu -8 41 1 1118 162 0 0 chr15 33132907 33133080 -52562674 + AluJo SINE Alu 127 299 -13 8482 179 43 30 chr15 33133199 33136168 -52559586 + L1MA7 LINE L1 3287 6289 -2 2489 74 0 0 chr15 33136649 33136959 -52558795 + AluY SINE Alu 1 310 -1 1343 229 56 20 chr15 33137134 33137566 -52558188 + L1MC4a LINE L1 6604 6999 -809 21872 59 2 2 chr15 33137578 33140496 -52555258 + L1PA3 LINE L1 9 2926 -3220 309 238 0 0 chr15 33140659 33140760 -52554994 + A-rich Low_complexity Low_complexity 1 101 0 210 136 34 17 chr15 33140862 33140921 -52554833 + GA-rich Low_complexity Low_complexity 1 60 0 19685 33 5 0 chr15 33140924 33144087 -52551667 + L1PA3 LINE L1 2986 6152 -3 1989 248 60 41 chr15 33144098 33144908 -52550846 + L1MC4a LINE L1 6983 7808 0 275 270 40 0 chr15 33145011 33145085 -52550669 - L2 LINE L2 -12 3260 3184 214 286 0 0 chr15 33145200 33145249 -52550505 - L2 LINE L2 -352 2961 2913 2155 101 34 0 chr15 33146410 33146707 -52549047 - AluSx SINE Alu -5 307 1 4407 217 22 0 chr15 33146783 33147663 -52548091 + MER54A LTR ERVL 3 901 0 28 0 0 0 chr15 33147760 33147788 -52547966 + AT_rich Low_complexity Low_complexity 1 28 0 1862 144 7 17 chr15 33148242 33148534 -52547220 + AluJb SINE Alu 1 289 -23 294 247 97 11 chr15 33148582 33148675 -52547079 + Charlie8 DNA MER1_type 127 227 -2190 204 339 118 16 chr15 33149376 33149503 -52546251 - MIR3 SINE MIR -31 177 38 211 263 232 0 chr15 33150112 33150211 -52545543 + MIR SINE MIR 63 184 -78 303 202 8 143 chr15 33150299 33150418 -52545336 + MIR3 SINE MIR 94 196 -12 252 59 0 0 chr15 33151697 33151731 -52544023 + (TG)n Simple_repeat Simple_repeat 1 34 0 1978 122 29 35 chr15 33151733 33152110 -52543644 - L1MA3 LINE L1 -44 6261 5887 * 2559 158 39 54 chr15 33152094 33152409 -52543345 - L1 LINE L1 -1509 6056 5753 2898 26 0 6 chr15 33152409 33152751 -52543003 + L1PA5 LINE L1 5809 6148 -6 2559 158 39 54 chr15 33152751 33153048 -52542706 - L1 LINE L1 -1812 5753 5453 2279 178 97 21 chr15 33153049 33153522 -52542232 + LTR22 LTR ERVK 1 509 0 4447 134 17 0 chr15 33153522 33154259 -52541495 + HERVK22 LTR ERVK 1 786 -6051 * 19689 101 9 10 chr15 33154252 33157410 -52538344 + HERVK22 LTR ERVK 2314 6837 0 1207 226 96 12 chr15 33157410 33157816 -52537938 + LTR22 LTR ERVK 1 509 0 19228 169 85 14 chr15 33157817 33162880 -52532874 - L1 LINE L1 -2109 5456 12 235 352 72 51 chr15 33163159 33163491 -52532263 + L2 LINE L2 2914 3252 -20 246 353 52 60 chr15 33163677 33163929 -52531825 + L2 LINE L2 1042 1291 -2023 235 323 91 55 chr15 33164258 33164478 -52531276 - MLT1L LTR MaLR -11 604 377 370 218 139 0 chr15 33164553 33164654 -52531100 - MLT1L LTR MaLR -337 278 164 332 310 90 7 chr15 33165472 33165627 -52530127 + MIR SINE MIR 85 252 -10 562 268 138 18 chr15 33165682 33165906 -52529848 - MIR SINE MIR 0 262 12 287 281 153 36 chr15 33166128 33166324 -52529430 + MIR SINE MIR 44 262 0 303 28 0 0 chr15 33166620 33166656 -52529098 + (CA)n Simple_repeat Simple_repeat 1 36 0 5047 81 17 1 chr15 33166729 33167417 -52528337 + L1PA8 LINE L1 5474 6172 0 1245 108 18 0 chr15 33168209 33168375 -52527379 + AluSg/x SINE Alu 129 297 -13 2280 177 31 15 chr15 33169121 33169662 -52526092 - L1PB4 LINE L1 -1278 4868 4319 1930 183 39 22 chr15 33169662 33170236 -52525518 + L1PB4 LINE L1 4881 5463 -693 4165 118 67 1 chr15 33170236 33170897 -52524857 - L1PA11 LINE L1 -4 6170 5467 1930 183 39 22 chr15 33170897 33170939 -52524815 + L1PB4 LINE L1 5463 5503 -653 1982 171 55 17 chr15 33170939 33171343 -52524411 + L1PB4 LINE L1 5731 6149 -7 2437 62 0 10 chr15 33171532 33171837 -52523917 + AluY SINE Alu 1 302 -9 28 0 0 0 chr15 33172629 33172657 -52523097 + AT_rich Low_complexity Low_complexity 1 28 0 1540 192 10 24 chr15 33172852 33173144 -52522610 + AluJo SINE Alu 1 288 -24 2122 116 7 3 chr15 33173884 33174186 -52521568 + AluSp SINE Alu 7 309 -4 13986 161 29 7 chr15 33174731 33181175 -52514579 + L1MA1 LINE L1 1136 7721 0 29 47 0 0 chr15 33181175 33181218 -52514536 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 33181556 33181578 -52514176 + AT_rich Low_complexity Low_complexity 1 22 0 315 308 63 20 chr15 33182566 33182819 -52512935 + L1ME4a LINE L1 5602 5865 -256 272 204 133 9 chr15 33182903 33183016 -52512738 + L1ME4a LINE L1 5969 6095 -26 2236 92 7 0 chr15 33183998 33184280 -52511474 + AluSx SINE Alu 11 294 -18 225 281 44 9 chr15 33184667 33184781 -52510973 - MER103 DNA DNA -3 163 46 2585 181 64 10 chr15 33184951 33185631 -52510123 - L1MA8 LINE L1 -1 6299 5559 10418 188 102 14 chr15 33185631 33185852 -52509902 - L1PBa LINE L1 -1756 5106 4906 2321 88 0 3 chr15 33185852 33186146 -52509608 - AluY SINE Alu -18 293 1 10418 188 102 14 chr15 33186146 33186327 -52509427 - L1PBa LINE L1 -1956 4906 4742 2427 96 6 11 chr15 33186327 33186690 -52509064 - L1PB1 LINE L1 0 6151 5791 10418 188 102 14 chr15 33186690 33188436 -52507318 - L1PBa LINE L1 -2120 4742 3150 360 0 0 0 chr15 33188436 33188476 -52507278 + (TG)n Simple_repeat Simple_repeat 2 41 0 10418 188 102 14 chr15 33188476 33190212 -52505542 - L1PBa LINE L1 -3712 3150 764 3547 243 63 13 chr15 33190213 33191060 -52504694 - L1 LINE L1 -3124 3982 3179 1746 179 3 10 chr15 33191060 33191372 -52504382 - AluSx SINE Alu 0 312 3 3547 243 63 13 chr15 33191372 33192276 -52503478 - L1 LINE L1 -3927 3179 2144 270 0 0 0 chr15 33192276 33192306 -52503448 + (T)n Simple_repeat Simple_repeat 1 30 0 2903 22 11 8 chr15 33192308 33192670 -52503084 - L1HS LINE L1 0 6155 5793 42425 37 28 1 chr15 33192931 33198248 -52497506 - L1P1 LINE L1 -687 5468 2 346 276 46 7 chr15 33198248 33198390 -52497364 + L1ME3 LINE L1 5699 5837 -324 * 1455 256 92 39 chr15 33198385 33198415 -52497339 - L1 LINE L1 -4732 2305 2278 1838 84 8 42 chr15 33198415 33198677 -52497077 - AluY SINE Alu -10 301 49 1455 256 92 39 chr15 33198677 33199636 -52496118 - L1 LINE L1 -4759 2278 1371 2231 156 43 14 chr15 33199636 33200052 -52495702 - MSTA LTR MaLR 0 428 1 1455 256 92 39 chr15 33200052 33200249 -52495505 - L1 LINE L1 -5666 1371 9 427 261 173 13 chr15 33200282 33200589 -52495165 - LTR37A LTR ERV1 -33 393 38 3948 229 99 23 chr15 33200840 33202223 -52493531 - L1PBa LINE L1 -3717 3145 1653 1647 149 21 14 chr15 33202223 33202511 -52493243 + L1PB3 LINE L1 5855 6144 -10 2229 60 3 0 chr15 33203001 33203283 -52492471 - L1PA7 LINE L1 -5 6149 5867 380 312 24 8 chr15 33203867 33203992 -52491762 + L2 LINE L2 3187 3313 0 333 344 115 34 chr15 33204696 33204846 -52490908 - L1M4 LINE L1 -3381 2765 2629 1138 249 8 0 chr15 33204846 33205083 -52490671 - MER8 DNA MER2_type 0 239 1 333 344 115 34 chr15 33205083 33205348 -52490406 - L1M4 LINE L1 -3517 2629 2316 2044 176 102 127 chr15 33205400 33206116 -52489638 - L1ME1 LINE L1 -12 6154 5457 998 278 41 17 chr15 33206899 33207244 -52488510 - L3 LINE CR1 -439 1138 786 730 166 199 0 chr15 33208206 33208357 -52487397 - L1PB4 LINE L1 -12 6144 5964 2174 140 84 15 chr15 33208357 33208563 -52487191 + L1PB4 LINE L1 5519 5709 -447 2586 139 64 2 chr15 33208563 33209001 -52486753 + MER4C LTR ERV1 1 465 0 2174 140 84 15 chr15 33209001 33209053 -52486701 + L1PB4 LINE L1 5709 5756 -400 270 0 0 0 chr15 33209053 33209083 -52486671 + (CA)n Simple_repeat Simple_repeat 2 31 0 2174 140 84 15 chr15 33209083 33209229 -52486525 + L1PB4 LINE L1 5756 5952 -204 817 298 84 14 chr15 33209343 33209712 -52486042 - L1ME LINE L1 -358 5804 5410 1614 171 46 140 chr15 33209754 33210274 -52485480 - MER67D LTR ERV1 -43 471 1 373 266 98 23 chr15 33210279 33210493 -52485261 - L1ME LINE L1 -769 5377 5148 279 207 49 12 chr15 33210673 33210755 -52484999 - L1ME LINE L1 -1299 4847 4763 33898 72 6 11 chr15 33210910 33216366 -52479388 + L1PA6 LINE L1 727 6153 -1 1229 163 50 10 chr15 33216385 33216764 -52478990 - L1P4 LINE L1 -694 5472 5082 1249 315 157 22 chr15 33216819 33217601 -52478153 + L3 LINE CR1 637 1524 -53 317 331 46 26 chr15 33217697 33217848 -52477906 - MIR3 SINE MIR -10 198 45 242 330 45 28 chr15 33218854 33219030 -52476724 - L1ME LINE L1 -583 5583 5405 208 268 71 18 chr15 33219896 33219952 -52475802 - MIR SINE MIR -58 150 92 393 258 21 0 chr15 33220734 33220827 -52474927 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 33223939 33223965 -52471789 + AT_rich Low_complexity Low_complexity 1 26 0 236 328 74 8 chr15 33224303 33224425 -52471329 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 33225985 33226145 -52469609 + MIR SINE MIR 13 181 -81 220 329 24 0 chr15 33226930 33227012 -52468742 + MIR3 SINE MIR 115 198 -10 184 286 0 0 chr15 33227338 33227387 -52468367 - MIR3 SINE MIR 0 208 160 206 160 0 120 chr15 33227816 33227866 -52467888 + L2 LINE L2 3234 3277 -36 205 143 86 0 chr15 33227840 33227875 -52467879 + MIR SINE MIR 207 244 -18 * 480 280 69 15 chr15 33230644 33230987 -52464767 + L1ME LINE L1 1357 1844 -5145 316 346 0 39 chr15 33231011 33231164 -52464590 + MLT1H LTR MaLR 57 203 -346 237 189 0 19 chr15 33231412 33231465 -52464289 + MLT1D LTR MaLR 447 498 -7 331 276 79 33 chr15 33231465 33231617 -52464137 + L1ME LINE L1 2104 2262 -4695 317 200 67 38 chr15 33231717 33231821 -52463933 - L1MB7 LINE L1 0 6184 6071 232 286 27 45 chr15 33231833 33231945 -52463809 - L1MEc LINE L1 -4403 1993 1884 630 236 51 0 chr15 33231978 33232135 -52463619 - L1ME1 LINE L1 -98 6068 5904 1252 185 78 4 chr15 33232135 33232367 -52463387 - MLT1A1 LTR MaLR 0 365 117 1786 194 97 25 chr15 33233543 33233975 -52461779 + L1MB1 LINE L1 4557 5019 -1127 1332 172 76 31 chr15 33233975 33234348 -52461406 + L1MB1 LINE L1 5221 5608 -560 * 6422 95 8 0 chr15 33234343 33235411 -52460343 - L1PA7 LINE L1 -615 5539 4467 4551 68 12 2 chr15 33235411 33236006 -52459748 + L1PA7 LINE L1 5539 6143 -11 1229 139 0 5 chr15 33236060 33236261 -52459493 + L1MB1 LINE L1 5593 5792 -542 2524 221 31 40 chr15 33236264 33236815 -52458939 - MLT2B3 LTR ERVL -7 547 2 2057 136 38 22 chr15 33236815 33237183 -52458571 + L1MB1 LINE L1 5787 6160 -8 266 281 24 54 chr15 33237354 33237521 -52458233 + L1 LINE L1 3863 4024 -2122 237 31 0 0 chr15 33237599 33237631 -52458123 + L1 LINE L1 4677 4708 -1438 2551 156 64 2 chr15 33237646 33238160 -52457594 + L1MA8 LINE L1 5734 6279 -12 264 221 76 38 chr15 33238178 33238336 -52457418 + L1 LINE L1 4255 4418 -1728 346 287 64 25 chr15 33238549 33238778 -52456976 + L1MC/D LINE L1 5272 5514 -648 343 250 33 76 chr15 33239523 33239707 -52456047 + L1MC5 LINE L1 7752 7927 -34 663 213 18 30 chr15 33240701 33240870 -52454884 - MER5A DNA MER1_type -1 188 22 300 303 83 9 chr15 33241118 33241227 -52454527 - L2 LINE L2 -1 3312 3196 302 261 321 0 chr15 33241274 33241408 -52454346 - MER91A DNA MER1_type -1 195 19 2139 58 0 0 chr15 33241416 33241675 -52454079 - AluY SINE Alu -52 259 1 320 261 149 12 chr15 33242057 33242221 -52453533 - L1ME2 LINE L1 -222 5940 5757 470 333 53 12 chr15 33242731 33242902 -52452852 + MER5B DNA MER1_type 1 178 0 251 262 12 12 chr15 33242938 33243022 -52452732 - MLT1L LTR MaLR -2 613 530 790 172 141 6 chr15 33243312 33243475 -52452279 - MER5A DNA MER1_type -3 186 2 1383 69 53 0 chr15 33243519 33243708 -52452046 - L1PA8 LINE L1 -1 6171 5973 1459 212 158 19 chr15 33243806 33244283 -52451471 + MLT1F LTR MaLR 1 542 0 394 233 0 86 chr15 33244663 33244731 -52451023 + MER5A DNA MER1_type 1 57 -132 1236 92 0 6 chr15 33244731 33244904 -52450850 + L1PB1 LINE L1 5978 6149 -2 394 233 0 86 chr15 33244904 33244951 -52450803 + MER5A DNA MER1_type 57 106 -83 473 257 46 26 chr15 33245024 33245176 -52450578 - MER5B DNA MER1_type 0 178 24 658 220 40 17 chr15 33245438 33245611 -52450143 + MER5B DNA MER1_type 1 177 -1 263 335 162 17 chr15 33245961 33246134 -52449620 - MIR SINE MIR -63 199 2 2379 295 63 45 chr15 33246975 33248187 -52447567 + L2 LINE L2 1612 2846 -468 1667 181 84 14 chr15 33248238 33248959 -52446795 + L1MC3 LINE L1 6765 7641 -144 22 56 0 0 chr15 33248970 33249006 -52446748 + AT_rich Low_complexity Low_complexity 1 36 0 648 228 188 0 chr15 33249366 33249515 -52446239 - MER5A DNA MER1_type -11 178 2 297 0 0 0 chr15 33249644 33249677 -52446077 + (A)n Simple_repeat Simple_repeat 1 33 0 560 267 33 22 chr15 33249767 33249947 -52445807 + MLT1L LTR MaLR 424 605 -10 1100 291 25 65 chr15 33249950 33250459 -52445295 + L2 LINE L2 2823 3311 -2 2464 76 0 0 chr15 33250750 33251053 -52444701 - AluY SINE Alu -8 303 1 23 68 0 0 chr15 33251805 33251849 -52443905 + AT_rich Low_complexity Low_complexity 1 44 0 230 156 0 0 chr15 33252055 33252100 -52443654 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr15 33253423 33253447 -52442307 + AT_rich Low_complexity Low_complexity 1 24 0 2024 206 41 95 chr15 33253551 33254285 -52441469 - LTR8A LTR ERV1 0 727 34 2966 175 78 34 chr15 33254881 33255561 -52440193 + MER67C LTR ERV1 1 710 0 213 108 0 0 chr15 33255774 33255811 -52439943 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 286 241 51 0 chr15 33256370 33256449 -52439305 + MER117 DNA MER1_type 17 99 -98 2435 183 22 10 chr15 33256665 33257163 -52438591 + L1P3 LINE L1 1 504 -5371 23642 148 20 19 chr15 33257180 33259228 -52436526 + L1P3 LINE L1 797 2843 -3644 1714 113 0 4 chr15 33259228 33259458 -52436296 - AluY SINE Alu -22 289 61 23642 148 20 19 chr15 33259458 33260629 -52435125 + L1P3 LINE L1 2843 4012 -2475 369 0 0 0 chr15 33260629 33260670 -52435084 + (CA)n Simple_repeat Simple_repeat 2 42 0 23642 148 20 19 chr15 33260670 33262412 -52433342 + L1P3 LINE L1 4012 5755 -732 16898 31 1 0 chr15 33262516 33264770 -52430984 + L1P2 LINE L1 3284 5539 -616 1240 171 76 31 chr15 33264765 33265138 -52430616 - L1M3 LINE L1 -560 5608 5221 * 1660 194 97 25 chr15 33265138 33265570 -52430184 - L1M3 LINE L1 -1127 5019 4557 1170 185 78 4 chr15 33266741 33266973 -52428781 + MLT1A1 LTR MaLR 117 365 0 583 236 51 0 chr15 33266973 33267130 -52428624 + L1ME1 LINE L1 5904 6068 -98 319 298 24 40 chr15 33267151 33267275 -52428479 + L1MEc LINE L1 1872 1993 -4403 294 195 81 46 chr15 33267287 33267374 -52428380 + L1ME1 LINE L1 6071 6160 -6 349 275 74 34 chr15 33267491 33267662 -52428092 - L1M4b LINE L1 -4695 2279 2086 432 281 46 14 chr15 33268122 33268423 -52427331 - L1M4b LINE L1 -4889 1534 1303 207 143 86 0 chr15 33271234 33271269 -52424485 - MIR SINE MIR -18 244 207 * 210 160 0 120 chr15 33271243 33271293 -52424461 - L2 LINE L2 -36 3277 3234 183 286 0 0 chr15 33271722 33271771 -52423983 + MIR3 SINE MIR 160 208 0 214 329 24 0 chr15 33272097 33272179 -52423575 - MIR3 SINE MIR -10 198 115 432 294 75 19 chr15 33272965 33273125 -52422629 - MIR SINE MIR -81 181 13 239 328 74 8 chr15 33274685 33274807 -52420947 - L2 LINE L2 -11 3302 3173 26 0 0 0 chr15 33275145 33275171 -52420583 + AT_rich Low_complexity Low_complexity 1 26 0 396 258 21 0 chr15 33278284 33278377 -52417377 + MER5A DNA MER1_type 10 104 -85 206 268 71 18 chr15 33279159 33279215 -52416539 + MIR SINE MIR 92 150 -58 366 368 53 10 chr15 33280048 33280257 -52415497 + L1ME LINE L1 5366 5583 -583 321 331 46 26 chr15 33281264 33281415 -52414339 + MIR3 SINE MIR 45 198 -10 1225 318 156 20 chr15 33281511 33282293 -52413461 - L3 LINE CR1 -53 1524 637 1145 163 50 10 chr15 33282348 33282727 -52413027 + L1PA8 LINE L1 5082 5472 -694 6641 74 12 15 chr15 33282746 33283906 -52411848 - L1PA6 LINE L1 -1 6153 4990 192 163 0 0 chr15 33283990 33284033 -52411721 + C-rich Low_complexity Low_complexity 1 43 0 196 230 18 26 chr15 33284061 33284174 -52411580 + CT-rich Low_complexity Low_complexity 1 112 0 2186 149 26 11 chr15 33284284 33284741 -52411013 + L1PA8 LINE L1 5704 6167 -5 34 24 0 0 chr15 33284741 33284782 -52410972 + AT_rich Low_complexity Low_complexity 1 41 0 466 292 35 28 chr15 33285062 33285206 -52410548 - MIR3 SINE MIR -13 195 51 234 62 0 0 chr15 33286970 33287002 -52408752 + (GA)n Simple_repeat Simple_repeat 1 32 0 619 239 0 22 chr15 33287575 33287713 -52408041 + MER58A DNA MER1_type 1 135 0 21 0 0 0 chr15 33288076 33288097 -52407657 + AT_rich Low_complexity Low_complexity 1 21 0 290 242 30 0 chr15 33288147 33288213 -52407541 - L2 LINE L2 0 3313 3246 2155 163 25 50 chr15 33288459 33288896 -52406858 - MSTB LTR MaLR 0 426 1 4521 190 35 3 chr15 33288896 33289775 -52405979 - MSTB-int LTR MaLR 0 1651 745 2714 117 3 16 chr15 33289794 33290161 -52405593 - THE1B LTR MaLR 0 364 3 5424 122 5 5 chr15 33290163 33290924 -52404830 - THE1B-int LTR MaLR 0 1580 820 1888 213 47 18 chr15 33290952 33291398 -52404356 + MLT1C LTR MaLR 9 467 0 233 168 84 11 chr15 33292187 33292282 -52403472 + (TG)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr15 33292911 33292932 -52402822 + AT_rich Low_complexity Low_complexity 1 21 0 365 153 45 6 chr15 33292948 33293105 -52402649 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 303 326 80 17 chr15 33293382 33293557 -52402197 - MIR3 SINE MIR -7 201 16 205 191 11 146 chr15 33294762 33294811 -52400943 - MIR3 SINE MIR -46 162 129 2439 43 7 7 chr15 33294811 33295111 -52400643 + AluY SINE Alu 1 300 -11 205 191 11 146 chr15 33295111 33295150 -52400604 - MIR3 SINE MIR -79 129 86 856 265 90 37 chr15 33295160 33295537 -52400217 - MLT1I LTR MaLR -10 399 3 222 342 13 26 chr15 33295539 33295615 -52400139 - MIR SINE MIR -118 90 16 256 88 0 0 chr15 33296753 33296787 -52398967 + LTR33A LTR ERVL 490 523 0 1661 251 117 41 chr15 33296905 33297738 -52398016 + L2 LINE L2 639 3304 -9 1289 250 128 16 chr15 33297945 33298321 -52397433 + LTR16C LTR ERVL 74 491 0 2922 252 308 66 chr15 33299149 33300729 -52395025 + L2 LINE L2 41 1237 -2076 354 180 33 77 chr15 33300729 33300833 -52394921 - MLT1E1 LTR MaLR -456 198 52 2922 252 308 66 chr15 33300833 33300856 -52394898 + L2 LINE L2 1237 1253 -2060 2671 129 3 3 chr15 33300856 33301220 -52394534 + THE1B LTR MaLR 1 364 0 2922 252 308 66 chr15 33301220 33301924 -52393830 + L2 LINE L2 1253 3038 -275 219 317 0 0 chr15 33302198 33302258 -52393496 - L2 LINE L2 0 3272 3213 270 355 8 16 chr15 33302305 33302429 -52393325 - MIR3 SINE MIR -82 126 4 279 203 0 62 chr15 33302806 33302870 -52392884 - MIR SINE MIR -14 248 189 232 333 177 0 chr15 33304525 33304621 -52391133 - L3 LINE CR1 -2 1575 1463 2737 19 0 3 chr15 33305140 33305447 -52390307 - AluY SINE Alu -5 306 1 24 0 0 0 chr15 33305949 33305973 -52389781 + AT_rich Low_complexity Low_complexity 1 24 0 1772 152 3 28 chr15 33306059 33306349 -52389405 - AluJo SINE Alu -21 291 9 609 302 94 0 chr15 33307053 33307245 -52388509 - MIR SINE MIR -51 211 2 271 371 30 23 chr15 33307258 33307390 -52388364 - L2 LINE L2 -1 3312 3180 710 212 46 131 chr15 33307420 33307703 -52388051 - MIR SINE MIR 0 262 4 312 347 116 16 chr15 33307776 33308018 -52387736 - L2 LINE L2 -189 3083 2818 807 242 74 12 chr15 33308202 33308446 -52387308 + MIR SINE MIR 2 260 -2 2311 57 0 0 chr15 33309483 33309809 -52385945 + AluY SINE Alu 1 326 0 1200 91 13 0 chr15 33309809 33309986 -52385768 + AluSg/x SINE Alu 128 306 0 225 94 0 0 chr15 33310309 33310341 -52385413 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1118 88 13 19 chr15 33310341 33310523 -52385231 + AluSg/x SINE Alu 124 304 0 525 216 24 8 chr15 33310776 33310901 -52384853 - MER20 DNA MER1_type -2 217 91 536 159 21 97 chr15 33310906 33311051 -52384703 + MLT1C LTR MaLR 6 139 -328 2684 134 29 2 chr15 33311065 33311554 -52384200 - L1MA9 LINE L1 -609 5682 5184 2208 156 13 23 chr15 33311559 33311648 -52384106 + L1MA9 LINE L1 5701 5789 -523 351 0 0 0 chr15 33311648 33311687 -52384067 + (CA)n Simple_repeat Simple_repeat 2 40 0 2208 156 13 23 chr15 33311687 33311982 -52383772 + L1MA9 LINE L1 5789 6081 -231 432 202 11 0 chr15 33311988 33312077 -52383677 + L1MA9 LINE L1 6184 6273 -39 1098 174 128 114 chr15 33312105 33312456 -52383298 + MLT1C LTR MaLR 112 467 0 577 143 0 0 chr15 33312461 33312545 -52383209 - MER20 DNA MER1_type -135 84 1 535 293 57 45 chr15 33313072 33313532 -52382222 - L1M2 LINE L1 -1194 4952 4487 1407 150 66 51 chr15 33313610 33313884 -52381870 + AluSx SINE Alu 14 291 -21 372 249 81 69 chr15 33314592 33314765 -52380989 + L2 LINE L2 2886 3060 -212 25 31 0 0 chr15 33314849 33314881 -52380873 + AT_rich Low_complexity Low_complexity 1 32 0 314 336 32 24 chr15 33314950 33315075 -52380679 + L2 LINE L2 3116 3241 -31 1789 149 0 49 chr15 33315096 33315404 -52380350 + AluJb SINE Alu 1 293 -19 266 73 24 0 chr15 33315444 33315485 -52380269 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 22 103 0 0 chr15 33316129 33316207 -52379547 + AT_rich Low_complexity Low_complexity 1 78 0 309 109 0 0 chr15 33317116 33317162 -52378592 + (CA)n Simple_repeat Simple_repeat 2 47 0 1225 163 19 116 chr15 33317698 33318017 -52377737 + AluJo SINE Alu 5 292 -20 49 18 0 0 chr15 33318041 33318097 -52377657 + AT_rich Low_complexity Low_complexity 1 56 0 186 213 81 125 chr15 33319572 33319708 -52376046 - L2 LINE L2 -1076 2238 2109 758 278 50 21 chr15 33320190 33320431 -52375323 + MIR SINE MIR 1 248 -14 309 356 106 15 chr15 33320802 33320934 -52374820 - MIR3 SINE MIR -54 154 11 1120 181 25 0 chr15 33321547 33321751 -52374003 + L1MD2 LINE L1 6150 6358 -1 298 217 72 12 chr15 33321877 33321960 -52373794 - MIR SINE MIR -93 169 82 528 295 125 36 chr15 33321965 33322189 -52373565 + LTR67 LTR ERVL 2 245 -312 373 266 38 25 chr15 33322304 33322462 -52373292 + LTR67 LTR ERVL 394 553 -4 2095 183 19 22 chr15 33324706 33325072 -52370682 + MLT1A1 LTR MaLR 1 365 0 256 272 49 0 chr15 33325269 33325350 -52370404 + L2 LINE L2 662 746 -2568 428 286 29 29 chr15 33325772 33325947 -52369807 - MIR3 SINE MIR -9 199 25 195 255 20 0 chr15 33326233 33326284 -52369470 - MER5A DNA MER1_type 0 189 138 195 42 0 0 chr15 33326529 33326553 -52369201 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 6131 109 30 24 chr15 33326582 33327655 -52368099 - L1PA13 LINE L1 -4 6159 5070 314 304 0 22 chr15 33327786 33327878 -52367876 + L1MC4 LINE L1 6614 6703 -1339 * 322 227 45 23 chr15 33327820 33327908 -52367846 - L1MC4 LINE L1 -1339 6703 6614 2033 107 17 10 chr15 33327912 33328201 -52367553 - AluSc SINE Alu -18 291 1 1396 150 41 59 chr15 33328468 33328807 -52366947 - L1MA4A LINE L1 -245 6760 6428 * 3840 174 38 3 chr15 33328806 33329552 -52366202 - L1MA4A LINE L1 -780 6068 5297 * 11675 207 66 17 chr15 33329533 33330175 -52365579 - L1MA4A LINE L1 -4100 2749 2140 1644 201 7 3 chr15 33330175 33330469 -52365285 - AluJb SINE Alu -17 295 1 11675 207 66 17 chr15 33330469 33332445 -52363309 - L1MA4A LINE L1 -4709 2140 4 265 266 156 23 chr15 33332579 33332752 -52363002 - MIR3 SINE MIR -5 203 8 689 340 84 60 chr15 33333286 33333689 -52362065 - L2 LINE L2 0 3272 2860 792 335 118 30 chr15 33334426 33335259 -52360495 + L2 LINE L2 2374 3272 0 3955 183 67 8 chr15 33335396 33336176 -52359578 - L1MB8 LINE L1 0 6178 5353 1257 156 26 136 chr15 33336958 33337297 -52358457 + AluJo SINE Alu 11 312 0 211 308 217 0 chr15 33337921 33338041 -52357713 + MIR SINE MIR 61 206 -56 186 374 116 13 chr15 33338839 33338994 -52356760 - L2 LINE L2 -5 3267 3097 2197 115 0 3 chr15 33339611 33339906 -52355848 - AluSx SINE Alu -18 294 1 260 228 164 95 chr15 33340429 33340618 -52355136 + MLT1J LTR MaLR 287 488 -23 2762 246 123 0 chr15 33340627 33341418 -52354336 + L2 LINE L2 1880 2767 -547 1231 229 110 48 chr15 33341516 33342080 -52353674 - L1MC4 LINE L1 0 8042 7444 551 269 113 60 chr15 33342731 33343181 -52352573 - L1ME LINE L1 -330 5791 5318 891 223 141 61 chr15 33343859 33344186 -52351568 + MLT1A1 LTR MaLR 13 365 0 390 294 88 22 chr15 33344229 33344365 -52351389 + L2 LINE L2 3127 3271 -1 223 242 132 33 chr15 33345160 33345251 -52350503 - MIR3 SINE MIR -2 206 107 2196 192 129 2 chr15 33345615 33346063 -52349691 + MLT1D LTR MaLR 1 505 0 248 312 56 68 chr15 33346163 33346413 -52349341 + L2 LINE L2 2882 3128 -144 4591 180 40 21 chr15 33346552 33347254 -52348500 - L1MB3 LINE L1 0 6183 5440 486 96 0 0 chr15 33347254 33347327 -52348427 + (TAG)n Simple_repeat Simple_repeat 3 75 0 4591 180 40 21 chr15 33347327 33347876 -52347878 - L1MB3 LINE L1 -743 5440 4903 2130 81 36 36 chr15 33348650 33348957 -52346797 - AluSg SINE Alu -3 307 1 229 89 44 0 chr15 33350093 33350138 -52345616 + (TA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 33350139 33350166 -52345588 + (GA)n Simple_repeat Simple_repeat 2 28 0 343 289 21 42 chr15 33350316 33350458 -52345296 + MIR SINE MIR 2 140 -122 3732 259 58 53 chr15 33350652 33351294 -52344460 + L1ME1 LINE L1 41 678 -5718 404 84 0 0 chr15 33351294 33351365 -52344389 + L1MA7 LINE L1 6221 6291 0 3732 259 58 53 chr15 33351365 33352310 -52343444 + L1ME1 LINE L1 678 1636 -4760 23611 46 44 2 chr15 33352317 33355318 -52340436 + L1P LINE L1 2 3126 -3020 31625 49 14 2 chr15 33355431 33355521 -52340233 + L1PA8A LINE L1 1310 1397 -4734 180 0 0 0 chr15 33355521 33355541 -52340213 + (AAATG)n Simple_repeat Simple_repeat 5 24 0 31625 49 14 2 chr15 33355541 33359858 -52335896 + L1PA8A LINE L1 1397 5766 -365 4517 12 2 0 chr15 33359958 33360476 -52335278 + L1PA2 LINE L1 5634 6152 -3 2019 224 63 73 chr15 33360479 33361390 -52334364 + L1ME1 LINE L1 1621 2521 -3875 2471 223 43 21 chr15 33361534 33361943 -52333811 + L1ME1 LINE L1 2480 2913 -3302 1335 220 10 20 chr15 33361943 33362247 -52333507 + AluJo SINE Alu 1 301 -11 2471 223 43 21 chr15 33362247 33362565 -52333189 + L1ME1 LINE L1 2913 3223 -2992 * 3130 191 27 95 chr15 33362560 33363498 -52332256 + L1MA9 LINE L1 5396 6269 -43 22 0 0 0 chr15 33363505 33363527 -52332227 + AT_rich Low_complexity Low_complexity 1 22 0 1209 251 64 6 chr15 33363536 33364006 -52331748 + L1ME1 LINE L1 3210 3706 -2509 384 98 0 0 chr15 33364019 33364080 -52331674 - L1PA16 LINE L1 -9 6157 6097 313 118 0 39 chr15 33364081 33364132 -52331622 - L1PA16 LINE L1 -107 6059 6011 3257 227 105 40 chr15 33364228 33364936 -52330818 + L1ME1 LINE L1 4355 5016 -1219 1600 195 3 3 chr15 33364936 33365234 -52330520 + AluJo SINE Alu 1 298 -14 3257 227 105 40 chr15 33365234 33366244 -52329510 + L1ME1 LINE L1 5016 6191 -44 1466 203 37 69 chr15 33366971 33367346 -52328408 + L1MDa LINE L1 19 381 -6159 10375 177 20 43 chr15 33367365 33370101 -52325653 + L1PB1 LINE L1 2698 5495 -656 5131 36 2 2 chr15 33370101 33370714 -52325040 + L1PA3 LINE L1 5540 6152 -3 10375 177 20 43 chr15 33370714 33371147 -52324607 + L1PB1 LINE L1 5495 5796 -355 183 80 0 0 chr15 33371147 33371172 -52324582 + (TA)n Simple_repeat Simple_repeat 1 25 0 10375 177 20 43 chr15 33371172 33371521 -52324233 + L1PB1 LINE L1 5796 6151 0 1417 256 100 49 chr15 33371531 33372145 -52323609 + L1MDa LINE L1 393 1121 -5419 * 4529 171 47 23 chr15 33372123 33373392 -52322362 + L1MB2 LINE L1 5269 6563 -2 1419 148 22 30 chr15 33373469 33373544 -52322210 - L1MC/D LINE L1 -681 5561 5487 1355 84 59 5 chr15 33373544 33373746 -52322008 - L1PA8 LINE L1 -3 6169 5957 1419 148 22 30 chr15 33373746 33373940 -52321814 - L1MC/D LINE L1 -755 5487 5294 4543 97 29 5 chr15 33375169 33375797 -52319957 + THE1B-int LTR MaLR 938 1580 0 2812 85 0 0 chr15 33375797 33376161 -52319593 + THE1B LTR MaLR 1 364 0 206 279 98 16 chr15 33376319 33376380 -52319374 - L2 LINE L2 -86 3186 3121 185 359 109 16 chr15 33376549 33376741 -52319013 - L2 LINE L2 -21 3292 3083 779 110 37 22 chr15 33377073 33377209 -52318545 - L1PA7 LINE L1 0 6154 6017 3973 47 0 0 chr15 33377249 33377734 -52318020 - L1PA4 LINE L1 -3 6152 5668 661 165 6 37 chr15 33377734 33377892 -52317862 - L1PA8 LINE L1 -106 6066 5914 312 283 108 18 chr15 33378008 33378174 -52317580 - L1MC4a LINE L1 -1894 5914 5734 1263 279 73 22 chr15 33378177 33378586 -52317168 + MLT1J2 LTR MaLR 7 436 -14 671 205 114 23 chr15 33378629 33378945 -52316809 + MER92B LTR ERV1 7 392 -244 282 260 0 14 chr15 33379436 33379509 -52316245 + L2 LINE L2 3241 3312 -1 212 182 26 156 chr15 33379988 33380065 -52315689 + MIR3 SINE MIR 131 197 -11 914 280 85 20 chr15 33380162 33380562 -52315192 + LTR16A LTR ERVL 25 450 0 247 295 26 0 chr15 33380598 33380676 -52315078 + MARNA DNA Mariner 455 534 -52 577 265 33 105 chr15 33381478 33381693 -52314061 + LTR16C LTR ERVL 155 335 -156 2961 3 0 0 chr15 33381693 33382011 -52313743 - AluYb8 SINE Alu 0 318 1 577 265 33 105 chr15 33382011 33382157 -52313597 + LTR16C LTR ERVL 335 490 -1 267 288 113 12 chr15 33382281 33382361 -52313393 - L2 LINE L2 -48 3224 3137 21 57 0 0 chr15 33382611 33382646 -52313108 + AT_rich Low_complexity Low_complexity 1 35 0 184 172 35 0 chr15 33382655 33382713 -52313041 + (TA)n Simple_repeat Simple_repeat 2 61 0 457 271 37 5 chr15 33382755 33382943 -52312811 + L1MC4a LINE L1 6073 6266 -1542 2255 249 109 72 chr15 33383186 33384475 -52311279 + L1MC4 LINE L1 6705 8040 -2 231 333 108 0 chr15 33385037 33385139 -52310615 - MIR3 SINE MIR -32 176 64 333 217 0 0 chr15 33385180 33385240 -52310514 + MIR SINE MIR 64 123 -139 775 213 40 13 chr15 33385850 33386075 -52309679 + L1ME1 LINE L1 5724 5954 -212 228 29 29 0 chr15 33386075 33386109 -52309645 - MSTB1 LTR MaLR -24 408 374 * 258 54 27 0 chr15 33386107 33386144 -52309610 + MSTB1 LTR MaLR 395 432 0 296 197 127 0 chr15 33386153 33386224 -52309530 - L1ME1 LINE L1 -133 6033 5954 2156 144 45 0 chr15 33386224 33386577 -52309177 - MSTB1 LTR MaLR -63 369 1 449 242 17 8 chr15 33386579 33386699 -52309055 + L1ME1 LINE L1 6040 6160 -6 9070 35 1 0 chr15 33386723 33387971 -52307783 - L1PA5 LINE L1 -629 5525 4276 5103 39 0 2 chr15 33387971 33388576 -52307178 + L1PA5 LINE L1 5536 6143 -11 2163 112 7 0 chr15 33389121 33389416 -52306338 + AluSx SINE Alu 3 299 -13 288 53 0 0 chr15 33389523 33389561 -52306193 + (GA)n Simple_repeat Simple_repeat 2 39 0 311 297 167 16 chr15 33389614 33389687 -52306067 - L1M4 LINE L1 -2411 3735 3674 1224 160 0 9 chr15 33389687 33389906 -52305848 + L1PB4 LINE L1 5940 6156 0 311 297 167 16 chr15 33389906 33390024 -52305730 - L1M4 LINE L1 -2472 3674 3515 31 44 0 0 chr15 33390137 33390182 -52305572 + AT_rich Low_complexity Low_complexity 1 45 0 697 288 79 71 chr15 33392129 33392609 -52303145 + L2 LINE L2 2829 3312 -1 280 279 29 10 chr15 33392697 33392801 -52302953 + GA-rich Low_complexity Low_complexity 2 107 0 749 273 88 4 chr15 33393449 33393687 -52302067 + MIR SINE MIR 1 258 -4 2536 71 122 6 chr15 33396164 33396500 -52299254 - THE1C LTR MaLR 0 375 1 2375 157 86 0 chr15 33396715 33397109 -52298645 + MSTA LTR MaLR 1 428 0 4038 175 9 0 chr15 33397109 33397807 -52297947 + MSTA-int LTR MaLR 1 704 -947 244 199 27 9 chr15 33397807 33397907 -52297847 + Alu SINE Alu 248 316 0 210 118 0 0 chr15 33399409 33399443 -52296311 + (T)n Simple_repeat Simple_repeat 1 34 0 274 280 67 0 chr15 33400485 33400560 -52295194 - L2 LINE L2 -36 3236 3157 266 329 114 26 chr15 33400826 33401054 -52294700 - L2 LINE L2 -1275 2039 1792 435 202 211 0 chr15 33401373 33401487 -52294267 + MER104 DNA Tc2 38 175 -5 2292 80 7 13 chr15 33401614 33401915 -52293839 + AluSx SINE Alu 1 299 -13 489 296 34 34 chr15 33401935 33402055 -52293699 + MER5A DNA MER1_type 10 132 -57 1561 191 3 26 chr15 33402055 33402358 -52293396 + AluJo SINE Alu 1 296 -16 489 296 34 34 chr15 33402358 33402416 -52293338 + MER5A DNA MER1_type 131 188 -1 368 273 34 0 chr15 33403652 33403740 -52292014 - LTR16C LTR ERVL -14 477 387 1349 224 84 6 chr15 33403812 33404147 -52291607 + LTR16A LTR ERVL 89 449 -1 964 259 148 14 chr15 33404148 33404438 -52291316 - LTR16C LTR ERVL -111 380 52 289 256 136 24 chr15 33404638 33404763 -52290991 - MIR SINE MIR -4 258 120 3998 143 95 5 chr15 33404857 33405520 -52290234 - L1PA8 LINE L1 -5 6167 5445 1483 163 23 47 chr15 33406815 33407116 -52288638 - AluJo SINE Alu -18 294 1 192 152 0 0 chr15 33407840 33407873 -52287881 + A-rich Low_complexity Low_complexity 1 33 0 5228 18 0 0 chr15 33407960 33408520 -52287234 + L1PA3 LINE L1 5593 6152 -3 2095 122 0 29 chr15 33409504 33409816 -52285938 - AluSx SINE Alu -9 303 1 290 25 0 25 chr15 33409838 33409855 -52285899 + (CA)n Simple_repeat Simple_repeat 1 55 0 290 25 0 25 chr15 33409855 33409895 -52285859 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 127 3 17 chr15 33410340 33410640 -52285114 + AluJo SINE Alu 1 296 -16 325 353 104 30 chr15 33410859 33411253 -52284501 + L2 LINE L2 1698 2120 -1194 565 300 89 4 chr15 33411373 33411620 -52284134 + LTR16C LTR ERVL 224 491 0 494 354 49 30 chr15 33411624 33412096 -52283658 + L2 LINE L2 2143 2623 -691 683 216 8 93 chr15 33412100 33412256 -52283498 + MIR SINE MIR 6 137 -125 2346 84 10 16 chr15 33412256 33412567 -52283187 + AluY SINE Alu 1 309 -2 683 216 8 93 chr15 33412567 33412646 -52283108 + MIR SINE MIR 137 221 -41 6345 118 5 2 chr15 33412647 33413146 -52282608 + L1PA13 LINE L1 4776 5272 -891 2006 132 7 3 chr15 33413146 33413433 -52282321 + AluSx SINE Alu 1 288 -24 6345 118 5 2 chr15 33413433 33414331 -52281423 + L1PA13 LINE L1 5272 6163 0 270 194 42 28 chr15 33414570 33414642 -52281112 - MER116 DNA Mariner -7 73 1 1745 173 3 13 chr15 33415937 33416237 -52279517 - AluJo SINE Alu -15 297 1 318 169 292 11 chr15 33416457 33416546 -52279208 - MER81 DNA DNA 0 114 1 1371 164 14 5 chr15 33417517 33417731 -52278023 + MER20 DNA MER1_type 4 219 0 1988 66 8 0 chr15 33417954 33418195 -52277559 + L1PA7 LINE L1 5912 6154 0 378 74 0 0 chr15 33420098 33420152 -52275602 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 258 237 41 chr15 33420323 33420420 -52275334 + MIR SINE MIR 31 146 -62 568 254 12 17 chr15 33420422 33420595 -52275159 + MER117 DNA MER1_type 4 175 -22 358 234 21 76 chr15 33420657 33420691 -52275063 - L1M4c LINE L1 -4791 2168 2134 213 65 0 0 chr15 33420691 33420722 -52275032 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 1849 122 42 0 chr15 33420728 33420991 -52274763 - AluSx SINE Alu -38 274 1 358 234 21 76 chr15 33420991 33421094 -52274660 - L1M4c LINE L1 -4830 2129 2032 2963 127 97 25 chr15 33421094 33421226 -52274528 - L1MA9 LINE L1 0 6312 6191 246 62 0 0 chr15 33421226 33421258 -52274496 + (TG)n Simple_repeat Simple_repeat 1 32 0 2963 127 97 25 chr15 33421258 33421684 -52274070 - L1MA9 LINE L1 -121 6191 5714 2679 214 62 56 chr15 33421709 33422657 -52273097 + MER21B LTR ERV1 9 862 -1 1517 145 17 0 chr15 33422665 33422906 -52272848 - L1MA9 LINE L1 -586 5726 5482 712 218 34 0 chr15 33422895 33423074 -52272680 - L1M4c LINE L1 -4896 2063 1879 * 6296 204 101 53 chr15 33423181 33424961 -52270793 - L1M4c LINE L1 -4985 1870 11 687 97 10 19 chr15 33425722 33425825 -52269929 + L1PA7 LINE L1 3 104 -6357 * 31657 102 12 26 chr15 33425813 33428184 -52267570 + L1PA7 LINE L1 427 2829 -3640 2745 22 0 10 chr15 33428184 33428496 -52267258 - AluYb8 SINE Alu -9 309 1 31657 102 12 26 chr15 33428496 33431488 -52264266 + L1PA7 LINE L1 2829 5795 -674 2247 112 3 0 chr15 33431488 33431782 -52263972 + AluSg SINE Alu 1 295 -15 31657 102 12 26 chr15 33431782 33432446 -52263308 + L1PA7 LINE L1 5795 6467 -2 2032 191 8 14 chr15 33432672 33433039 -52262715 + MLT1A1 LTR MaLR 1 365 0 240 333 69 0 chr15 33433565 33433637 -52262117 - L2 LINE L2 -43 3229 3153 42037 61 5 2 chr15 33433667 33439796 -52255958 + L1PA5 LINE L1 11 6154 0 180 152 0 0 chr15 33439843 33439876 -52255878 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 2405 183 38 32 chr15 33440885 33441387 -52254367 + MLT1D LTR MaLR 1 505 0 203 207 118 96 chr15 33442065 33442200 -52253554 - MIR SINE MIR -60 202 65 486 88 0 0 chr15 33442804 33442872 -52252882 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 888 130 37 74 chr15 33442872 33443011 -52252743 + MER20 DNA MER1_type 64 198 -21 1797 163 7 17 chr15 33443011 33443311 -52252443 + AluJb SINE Alu 1 297 -15 888 130 37 74 chr15 33443311 33443333 -52252421 + MER20 DNA MER1_type 198 219 0 742 235 59 110 chr15 33443463 33443614 -52252140 - MIR SINE MIR -1 261 129 2323 128 0 0 chr15 33443614 33443927 -52251827 + AluSq SINE Alu 1 313 0 742 235 59 110 chr15 33443927 33444047 -52251707 - MIR SINE MIR -133 129 4 544 229 34 50 chr15 33444389 33444568 -52251186 - MER69A DNA AcHobo -1 176 1 332 156 0 16 chr15 33445212 33445276 -52250478 + HAL1 LINE L1 1598 1660 -847 5694 123 9 9 chr15 33446089 33446372 -52249382 + L1PA15 LINE L1 4374 4656 -1509 2117 122 3 3 chr15 33446372 33446660 -52249094 + AluSx SINE Alu 1 288 -24 5694 123 9 9 chr15 33446660 33448177 -52247577 + L1PA15 LINE L1 4655 6162 -3 472 269 131 7 chr15 33448240 33448385 -52247369 + MIR3 SINE MIR 36 198 -10 9028 167 31 35 chr15 33448963 33450962 -52244792 + L1MA7 LINE L1 3313 5320 -971 2373 71 10 7 chr15 33450962 33451272 -52244482 - AluY SINE Alu 0 311 1 9028 167 31 35 chr15 33451272 33451520 -52244234 + L1MA7 LINE L1 5316 5564 -723 1525 142 61 45 chr15 33451520 33451850 -52243904 + L1MA7 LINE L1 5946 6280 -11 4360 43 2 2 chr15 33452679 33453216 -52242538 + L1PA4 LINE L1 5617 6153 -2 385 308 8 22 chr15 33453856 33454045 -52241709 + MIR SINE MIR 24 206 -56 266 152 22 0 chr15 33455746 33455792 -52239962 - L2 LINE L2 0 3313 3267 182 206 29 0 chr15 33455764 33455798 -52239956 - MIR SINE MIR -13 249 215 * 288 330 0 18 chr15 33455977 33456086 -52239668 - MIR SINE MIR -125 137 31 1987 103 80 20 chr15 33456504 33456854 -52238900 - THE1C LTR MaLR -2 373 3 350 281 165 6 chr15 33456889 33457053 -52238701 + MLT1K LTR MaLR 171 360 -228 351 214 34 43 chr15 33457113 33457230 -52238524 + MLT1K LTR MaLR 466 581 -7 375 224 132 17 chr15 33457244 33457418 -52238336 - Charlie7 DNA MER1_type -1 2611 2418 310 230 30 20 chr15 33457390 33457490 -52238264 - Charlie7 DNA MER1_type -2510 102 2 * 21 0 0 0 chr15 33457646 33457667 -52238087 + AT_rich Low_complexity Low_complexity 1 21 0 361 279 139 24 chr15 33458659 33458824 -52236930 - MIR SINE MIR -58 204 21 546 167 107 130 chr15 33459104 33459182 -52236572 - MER33 DNA MER1_type -2289 296 218 1857 120 10 17 chr15 33459182 33459473 -52236281 - AluJb SINE Alu -23 289 1 546 167 107 130 chr15 33459473 33459693 -52236061 - MER33 DNA MER1_type -2367 218 5 231 267 50 25 chr15 33459992 33460112 -52235642 + L1ME LINE L1 5762 5884 -286 1925 112 0 32 chr15 33460427 33460712 -52235042 - AluSx SINE Alu 0 312 37 342 181 6 17 chr15 33461178 33461265 -52234489 + L1MC4 LINE L1 7909 8040 0 2420 81 3 3 chr15 33461536 33461843 -52233911 - AluSp SINE Alu -6 307 1 1084 213 0 14 chr15 33463574 33463795 -52231959 - MER20 DNA MER1_type 0 219 2 273 229 119 0 chr15 33463941 33464050 -52231704 - L1ME LINE L1 -382 5739 5618 440 238 95 24 chr15 33464143 33464269 -52231485 + L2 LINE L2 3179 3313 0 1971 138 10 14 chr15 33464462 33464758 -52230996 + AluSq SINE Alu 6 300 -13 1041 238 147 25 chr15 33465141 33465494 -52230260 - MSTD LTR MaLR 0 396 1 748 272 6 0 chr15 33466119 33466288 -52229466 - MER5B DNA MER1_type 0 178 9 673 172 43 0 chr15 33466541 33466657 -52229097 + AluJb SINE Alu 171 291 -21 182 269 0 0 chr15 33466952 33467004 -52228750 + L2 LINE L2 3262 3313 0 239 222 0 122 chr15 33467353 33467443 -52228311 - L2 LINE L2 -12 3260 3182 * 346 342 118 0 chr15 33467432 33467593 -52228161 + MIR SINE MIR 35 214 -48 195 253 114 25 chr15 33467610 33467689 -52228065 - MIR SINE MIR -71 191 106 1584 189 4 4 chr15 33467755 33468030 -52227724 - AluJo SINE Alu -31 281 7 223 270 130 30 chr15 33469004 33469104 -52226650 - L2 LINE L2 0 3272 3163 511 226 58 32 chr15 33470068 33470223 -52225531 - MIR SINE MIR -2 260 102 212 194 143 82 chr15 33470344 33470442 -52225312 + MIR SINE MIR 77 180 -82 1078 172 5 54 chr15 33470677 33470898 -52224856 + AluJb SINE Alu 85 294 -18 589 214 166 70 chr15 33472791 33473020 -52222734 - MIR SINE MIR -6 256 6 268 179 317 57 chr15 33473318 33473441 -52222313 + MER5A DNA MER1_type 34 188 -1 249 307 93 0 chr15 33474247 33474322 -52221432 + L2 LINE L2 3231 3312 -1 3729 192 96 24 chr15 33474620 33475726 -52220028 + L1MC4 LINE L1 6828 7995 0 981 184 60 0 chr15 33476403 33476653 -52219101 - MER33 DNA MER1_type 0 324 60 2534 212 81 23 chr15 33476714 33477463 -52218291 + L1MC4 LINE L1 7250 8042 0 462 250 20 0 chr15 33477464 33477564 -52218190 + MER5A DNA MER1_type 8 109 -80 2721 126 14 5 chr15 33477890 33478334 -52217420 + L1PB3 LINE L1 5707 6154 0 26 50 0 0 chr15 33478343 33478383 -52217371 + AT_rich Low_complexity Low_complexity 1 40 0 215 224 0 92 chr15 33478955 33479031 -52216723 + L2 LINE L2 3161 3229 -43 2223 104 0 7 chr15 33479341 33479649 -52216105 + AluSx SINE Alu 1 306 -6 1086 77 36 6 chr15 33479984 33480152 -52215602 - MER30 DNA MER1_type -57 173 1 2278 108 0 7 chr15 33480398 33480705 -52215049 + AluSx SINE Alu 2 306 -6 242 29 29 0 chr15 33480822 33480857 -52214897 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 269 182 15 15 chr15 33481818 33481884 -52213870 - MER116 DNA Mariner 0 80 15 224 305 143 9 chr15 33484641 33484746 -52211008 - L2 LINE L2 -4 3268 3150 315 0 0 0 chr15 33485235 33485270 -52210484 + (CA)n Simple_repeat Simple_repeat 2 36 0 1083 162 20 25 chr15 33485280 33485477 -52210277 + AluJb SINE Alu 108 303 -9 243 299 104 52 chr15 33486316 33486450 -52209304 - MER5A DNA MER1_type -48 141 1 562 244 50 44 chr15 33488073 33488253 -52207501 + L2 LINE L2 3118 3298 -15 307 226 53 83 chr15 33488396 33488529 -52207225 - L1ME LINE L1 -486 5618 5490 364 277 129 7 chr15 33488545 33488700 -52207054 - L1ME LINE L1 -2337 5454 5281 1883 113 42 42 chr15 33489179 33489532 -52206222 - THE1B LTR MaLR -11 353 1 877 295 60 64 chr15 33490174 33490981 -52204773 - L1ME LINE L1 -4862 1257 455 2347 91 0 7 chr15 33490999 33491308 -52204446 + AluSg1 SINE Alu 1 307 -2 397 259 71 94 chr15 33491380 33491677 -52204077 - L1ME LINE L1 -5825 294 5 2048 132 7 0 chr15 33491803 33492098 -52203656 - AluSx SINE Alu -15 297 1 998 230 72 122 chr15 33492266 33492792 -52202962 - L2 LINE L2 0 3313 2814 2118 70 92 0 chr15 33492969 33493242 -52202512 - AluSp SINE Alu -15 298 1 2428 52 3 26 chr15 33493847 33494156 -52201598 - AluY SINE Alu -9 302 1 600 130 0 46 chr15 33494361 33494469 -52201285 - L1PB4 LINE L1 -1 6155 6053 1934 131 25 0 chr15 33496368 33496651 -52199103 + AluSx SINE Alu 1 290 -22 1730 139 46 4 chr15 33496795 33497076 -52198678 - AluJb SINE Alu -19 293 1 658 299 55 10 chr15 33497133 33497740 -52198014 + L1ME LINE L1 5014 5655 -496 774 254 34 34 chr15 33497970 33498106 -52197648 + MER3 DNA MER1_type 1 139 -70 1752 148 95 0 chr15 33498106 33498390 -52197364 - AluSx SINE Alu -1 311 1 774 254 34 34 chr15 33498390 33498462 -52197292 + MER3 DNA MER1_type 138 209 0 225 256 151 0 chr15 33498513 33498599 -52197155 + L1M2 LINE L1 5700 5798 -502 1151 288 69 33 chr15 33498767 33499347 -52196407 - MLT1L LTR MaLR -14 601 1 2489 187 36 4 chr15 33499444 33499999 -52195755 - L1MA4 LINE L1 0 6300 5728 287 244 0 11 chr15 33500213 33500303 -52195451 + (TA)n Simple_repeat Simple_repeat 2 90 0 235 264 0 22 chr15 33500315 33500406 -52195348 + L1MC4 LINE L1 6615 6703 -1339 495 293 0 0 chr15 33500413 33500587 -52195167 + (TA)n Simple_repeat Simple_repeat 1 174 0 228 247 59 0 chr15 33500590 33500675 -52195079 + L1MC4 LINE L1 6614 6703 -1339 183 239 0 0 chr15 33500685 33500731 -52195023 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 5828 144 22 38 chr15 33500737 33502169 -52193585 - L1M1 LINE L1 -660 5645 4240 242 304 0 0 chr15 33502205 33502261 -52193493 - MIR SINE MIR -142 120 65 180 0 0 0 chr15 33502461 33502481 -52193273 + (T)n Simple_repeat Simple_repeat 1 20 0 491 262 131 30 chr15 33502592 33502829 -52192925 - MIR SINE MIR 0 262 2 2348 67 7 3 chr15 33503035 33503332 -52192422 - AluY SINE Alu -13 298 1 3657 126 2 11 chr15 33503966 33504498 -52191256 + MER1A DNA MER1_type 1 527 0 2365 64 0 0 chr15 33504658 33504965 -52190789 + AluY SINE Alu 1 307 0 2666 14 0 0 chr15 33505874 33506169 -52189585 + AluY SINE Alu 1 295 -16 2221 79 55 0 chr15 33506183 33506475 -52189279 + AluSx SINE Alu 1 308 -4 663 229 122 5 chr15 33506483 33506688 -52189066 + MIR SINE MIR 31 259 -3 2006 124 13 7 chr15 33506755 33507053 -52188701 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr15 33507131 33507163 -52188591 + AT_rich Low_complexity Low_complexity 1 32 0 2145 124 10 16 chr15 33507883 33508197 -52187557 + AluSx SINE Alu 1 312 0 23 0 0 0 chr15 33508424 33508447 -52187307 + AT_rich Low_complexity Low_complexity 1 23 0 589 217 171 0 chr15 33509459 33509611 -52186143 + MER5A DNA MER1_type 9 186 -3 290 24 48 0 chr15 33510230 33510272 -52185482 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2254 86 0 10 chr15 33510274 33510564 -52185190 - AluSq SINE Alu -26 287 1 1047 194 103 15 chr15 33510856 33511185 -52184569 + MLT2F LTR ERVL 302 659 -4 256 298 24 36 chr15 33511191 33511275 -52184479 - MER5B DNA MER1_type -73 105 23 225 0 0 0 chr15 33512045 33512070 -52183684 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2177 120 0 22 chr15 33512281 33512597 -52183157 + AluSg SINE Alu 1 309 -1 183 156 0 0 chr15 33513343 33513375 -52182379 + (CA)n Simple_repeat Simple_repeat 1 32 0 211 351 14 0 chr15 33514092 33514166 -52181588 + L2 LINE L2 2878 2952 -320 851 209 45 6 chr15 33514301 33514476 -52181278 + MIR SINE MIR 17 198 -64 860 249 16 0 chr15 33514476 33514661 -52181093 + MER5A DNA MER1_type 1 188 -1 300 70 0 0 chr15 33515569 33515612 -52180142 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr15 33515619 33515641 -52180113 + AT_rich Low_complexity Low_complexity 1 22 0 2078 94 19 16 chr15 33515647 33515954 -52179800 + AluSq SINE Alu 1 308 -5 204 310 35 53 chr15 33516655 33516768 -52178986 + MIR SINE MIR 79 189 -73 305 331 113 0 chr15 33517341 33517474 -52178280 + MIR SINE MIR 102 249 -13 1946 125 42 0 chr15 33518453 33518741 -52177013 + AluSp SINE Alu 1 300 -13 586 213 29 66 chr15 33518742 33518986 -52176768 + L1MC5 LINE L1 7701 7935 -26 21 82 0 0 chr15 33519721 33519770 -52175984 + AT_rich Low_complexity Low_complexity 1 49 0 2759 150 21 6 chr15 33519900 33520379 -52175375 - L1PA16 LINE L1 -30 6136 5651 4407 210 38 38 chr15 33520435 33521640 -52174114 + L1M4 LINE L1 16 1220 -5322 387 290 83 16 chr15 33521651 33521844 -52173910 + L1M4 LINE L1 1898 2103 -4543 2144 134 0 10 chr15 33521899 33522206 -52173548 + AluSx SINE Alu 1 304 -8 285 261 75 35 chr15 33522247 33522473 -52173281 + L1M4 LINE L1 2289 2523 -4123 * 1745 176 94 2 chr15 33522471 33522896 -52172858 + L1MB7 LINE L1 5718 6181 -3 21 0 0 0 chr15 33523295 33523316 -52172438 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 0 chr15 33524242 33524536 -52171218 + AluSp SINE Alu 18 311 -2 3153 62 0 62 chr15 33524761 33525231 -52170523 + L1PB1 LINE L1 5711 6151 0 1905 113 7 0 chr15 33525774 33526065 -52169689 - L1MA4A LINE L1 -7 6296 6004 417 275 129 34 chr15 33527464 33527665 -52168089 + MIR SINE MIR 38 256 -6 22 0 0 0 chr15 33528466 33528488 -52167266 + AT_rich Low_complexity Low_complexity 1 22 0 380 322 153 0 chr15 33529680 33529798 -52165956 + MIR SINE MIR 11 146 -116 298 165 58 126 chr15 33529805 33529908 -52165846 + HsTC2 DNA Tc2 4 99 -1799 376 295 25 8 chr15 33530000 33530122 -52165632 + MIR SINE MIR 139 262 0 22 0 0 0 chr15 33530220 33530242 -52165512 + AT_rich Low_complexity Low_complexity 1 22 0 1255 234 26 4 chr15 33530567 33530656 -52165098 + AluJo SINE Alu 20 106 -206 507 60 0 0 chr15 33530656 33530723 -52165031 + (TA)n Simple_repeat Simple_repeat 2 68 0 1255 234 26 4 chr15 33530723 33530898 -52164856 + AluJo SINE Alu 106 290 -22 22 0 0 0 chr15 33530898 33530920 -52164834 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 184 0 chr15 33530920 33530958 -52164796 + L1PA11 LINE L1 6128 6172 -2 22 0 0 0 chr15 33531234 33531256 -52164498 + AT_rich Low_complexity Low_complexity 1 22 0 591 314 54 0 chr15 33531442 33531646 -52164108 + MIR SINE MIR 46 260 -2 413 309 81 0 chr15 33531857 33532006 -52163748 - MIR3 SINE MIR -17 191 31 1781 112 109 4 chr15 33532471 33532738 -52163016 + AluSx SINE Alu 1 295 -17 288 225 70 42 chr15 33532793 33532864 -52162890 - L2 LINE L2 -1 3312 3240 1971 116 0 52 chr15 33533117 33533450 -52162304 + AluSx SINE Alu 1 312 0 730 173 0 81 chr15 33533479 33533652 -52162102 - AluJo SINE Alu -90 222 64 1346 135 160 8 chr15 33534926 33535170 -52160584 + AluSx SINE Alu 1 281 -31 262 105 18 18 chr15 33535173 33535230 -52160524 + (TA)n Simple_repeat Simple_repeat 1 57 0 1063 113 25 0 chr15 33537036 33537195 -52158559 - AluY SINE Alu -12 299 137 1661 184 0 20 chr15 33538382 33538676 -52157078 - AluJb SINE Alu -22 290 3 2061 131 0 16 chr15 33539045 33539359 -52156395 - AluSx SINE Alu -1 311 3 694 111 0 9 chr15 33541311 33541419 -52154335 + L1PB3 LINE L1 6004 6110 -44 2038 129 11 3 chr15 33541419 33541706 -52154048 + AluSx SINE Alu 1 289 -23 2339 93 3 0 chr15 33541950 33542252 -52153502 + AluSg SINE Alu 1 303 -7 2260 106 3 0 chr15 33542263 33542564 -52153190 + AluSx SINE Alu 1 302 -10 38 39 0 0 chr15 33543565 33543617 -52152137 + AT_rich Low_complexity Low_complexity 1 52 0 187 300 55 55 chr15 33544752 33544862 -52150892 - L2 LINE L2 -3 3310 3201 242 292 154 31 chr15 33545012 33545142 -52150612 + MIR SINE MIR 65 210 -52 1520 224 3 0 chr15 33545233 33545528 -52150226 + AluJo SINE Alu 2 297 -15 309 239 123 23 chr15 33545833 33545963 -52149791 + MIR3 SINE MIR 66 208 0 1939 118 0 4 chr15 33546810 33547073 -52148681 + AluSq SINE Alu 1 262 -51 686 92 0 10 chr15 33547074 33547172 -52148582 + AluSg/x SINE Alu 188 284 -25 539 225 44 33 chr15 33547772 33547954 -52147800 + AluY SINE Alu 119 302 -9 1711 184 7 3 chr15 33548557 33548839 -52146915 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 33549123 33549212 -52146542 + AT_rich Low_complexity Low_complexity 1 89 0 625 194 30 37 chr15 33549488 33549622 -52146132 + FLAM_A SINE Alu 1 133 0 1837 146 3 7 chr15 33549882 33550169 -52145585 - AluSx SINE Alu -26 286 1 500 222 131 50 chr15 33551220 33551418 -52144336 - Charlie8 DNA MER1_type -2143 274 61 724 203 69 43 chr15 33551452 33551684 -52144070 + MIR SINE MIR 14 251 -11 22 35 0 0 chr15 33551820 33551849 -52143905 + AT_rich Low_complexity Low_complexity 1 29 0 1342 148 108 68 chr15 33552304 33552628 -52143126 - MER44D DNA MER2_type -1 608 2 467 136 262 0 chr15 33552940 33553043 -52142711 + FLAM_A SINE Alu 1 130 -12 237 65 0 0 chr15 33553461 33553492 -52142262 + (T)n Simple_repeat Simple_repeat 1 31 0 187 547 0 0 chr15 33553513 33553566 -52142188 + G-rich Low_complexity Low_complexity 1 53 0 344 266 21 11 chr15 33554684 33554778 -52140976 - MIR SINE MIR -94 114 20 887 151 0 0 chr15 33554816 33554942 -52140812 + FLAM_C SINE Alu 1 126 -17 1318 160 53 63 chr15 33554968 33555286 -52140468 + MER33 DNA MER1_type 1 315 -9 1878 116 56 0 chr15 33555368 33555636 -52140118 - AluSg SINE Alu -17 293 11 511 311 149 0 chr15 33556015 33556250 -52139504 - L3 LINE CR1 -420 1157 888 2165 116 7 0 chr15 33556521 33556831 -52138923 + AluSx SINE Alu 1 312 0 2077 114 0 7 chr15 33557110 33557391 -52138363 + AluSc SINE Alu 1 279 -30 2208 98 3 31 chr15 33557391 33557708 -52138046 + AluSx SINE Alu 2 309 -3 205 121 0 69 chr15 33557716 33557774 -52137980 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 692 224 109 11 chr15 33557805 33557988 -52137766 + MIR SINE MIR 34 234 -28 1949 69 120 4 chr15 33558060 33558335 -52137419 + AluY SINE Alu 1 307 -4 484 147 0 0 chr15 33558383 33558451 -52137303 + AluJ/FLAM SINE Alu 2 69 -243 518 208 195 32 chr15 33558453 33558607 -52137147 + AluJo/FRAM SINE Alu 130 308 -4 204 211 19 19 chr15 33558607 33558659 -52137095 + (TA)n Simple_repeat Simple_repeat 1 52 0 281 149 35 11 chr15 33558681 33558768 -52136986 + (TA)n Simple_repeat Simple_repeat 1 89 0 250 86 0 0 chr15 33559568 33559603 -52136151 + MADE1 DNA Mariner 1 35 -45 23 0 0 0 chr15 33559929 33559952 -52135802 + AT_rich Low_complexity Low_complexity 1 23 0 1997 102 57 21 chr15 33560161 33560444 -52135310 + AluSg SINE Alu 1 293 -17 356 653 0 0 chr15 33561471 33561615 -52134139 + G-rich Low_complexity Low_complexity 1 144 0 2306 103 0 0 chr15 33562048 33562349 -52133405 + AluSg SINE Alu 1 301 -9 2664 57 3 20 chr15 33563053 33563404 -52132350 - L1PA8 LINE L1 -1 6171 5827 2038 121 10 23 chr15 33563404 33563709 -52132045 - AluSc SINE Alu -8 301 1 9340 75 19 1 chr15 33563709 33565320 -52130434 - L1P3 LINE L1 -482 5690 4052 2070 130 0 0 chr15 33565478 33565642 -52130112 - AluSx SINE Alu -11 301 138 414 0 0 0 chr15 33565642 33565688 -52130066 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1923 102 0 0 chr15 33565688 33565934 -52129820 - AluY SINE Alu -30 281 36 2070 130 0 0 chr15 33565934 33566068 -52129686 - AluSx SINE Alu -172 140 2 1117 226 62 31 chr15 33566234 33566526 -52129228 - AluJo SINE Alu 0 302 2 23 0 0 0 chr15 33566555 33566578 -52129176 + AT_rich Low_complexity Low_complexity 1 23 0 401 290 100 35 chr15 33566621 33566821 -52128933 - MLT1I LTR MaLR -114 295 83 1397 199 8 0 chr15 33567032 33567283 -52128471 + L1MB7 LINE L1 5423 5675 -509 3965 50 50 0 chr15 33567284 33567784 -52127970 + LTR17 LTR ERV1 256 780 0 259 191 0 0 chr15 33567784 33567826 -52127928 + HERV17 LTR ERV1 2 43 -8583 * 57059 43 5 1 chr15 33567814 33574451 -52121303 + HERV17 LTR ERV1 1953 8621 -5 2723 58 0 0 chr15 33574453 33574779 -52120975 + LTR17 LTR ERV1 1 326 -454 1694 183 56 3 chr15 33574822 33575178 -52120576 + L1MB7 LINE L1 5665 6039 -145 8447 25 7 228 chr15 33575179 33576731 -52119023 - SVA Other Other -1 1385 177 1503 124 10 0 chr15 33576770 33576979 -52118775 - AluSg/x SINE Alu -14 296 86 2065 134 7 3 chr15 33577019 33577317 -52118437 + AluSx SINE Alu 3 301 -11 851 137 22 0 chr15 33577319 33577458 -52118296 + L1MB7 LINE L1 6035 6176 -8 457 95 68 0 chr15 33577473 33577547 -52118207 + L1MB7 LINE L1 6105 6183 -1 819 142 17 0 chr15 33577662 33577782 -52117972 + AluSg/x SINE Alu 91 212 -100 810 314 37 37 chr15 33577805 33578209 -52117545 - ERVL LTR ERVL -3652 2112 1709 2289 105 3 0 chr15 33578271 33578565 -52117189 - AluSp SINE Alu -18 295 1 1164 216 63 92 chr15 33578710 33578843 -52116911 - L1MC4 LINE L1 -136 7906 7771 2537 78 0 0 chr15 33578843 33579150 -52116604 + AluY SINE Alu 1 307 -4 1164 216 63 92 chr15 33579150 33579351 -52116403 - L1MC4 LINE L1 -271 7771 7566 2234 110 3 0 chr15 33579351 33579651 -52116103 - AluSx SINE Alu -11 301 1 8732 61 3 4 chr15 33579652 33580724 -52115030 + MER11C LTR ERVK 1 1071 0 1164 216 63 92 chr15 33580724 33580739 -52115015 - L1MC4 LINE L1 -476 7566 7552 2361 92 0 10 chr15 33580739 33581042 -52114712 - AluY SINE Alu -11 300 1 1164 216 63 92 chr15 33581042 33581164 -52114590 - L1MC4 LINE L1 -490 7552 7445 261 179 107 0 chr15 33581161 33581217 -52114537 - L1MC4 LINE L1 -972 7070 7009 * 345 132 19 0 chr15 33581217 33581270 -52114484 - MER45C DNA AcHobo 0 953 900 * 499 348 54 5 chr15 33581265 33581489 -52114265 - MER45C DNA AcHobo -325 628 394 24 32 0 0 chr15 33581969 33582000 -52113754 + AT_rich Low_complexity Low_complexity 1 31 0 345 186 29 0 chr15 33582336 33582406 -52113348 - L1MC4a LINE L1 -930 6878 6807 2067 111 29 26 chr15 33582431 33582738 -52113016 - AluSg SINE Alu -2 308 1 2199 112 3 0 chr15 33582769 33583063 -52112691 + AluSg SINE Alu 1 295 -15 4185 182 63 55 chr15 33583086 33584349 -52111405 - L1MB5 LINE L1 -6 6168 4917 1986 162 0 0 chr15 33584349 33584657 -52111097 - AluJb SINE Alu -4 308 1 4185 182 63 55 chr15 33584657 33585039 -52110715 - L1MB5 LINE L1 -1257 4917 4497 2227 96 20 3 chr15 33585039 33585341 -52110413 - AluSq SINE Alu -6 307 1 4185 182 63 55 chr15 33585341 33585628 -52110126 - L1MB5 LINE L1 -1677 4497 4214 746 186 0 101 chr15 33585628 33585816 -52109938 - L1MC4a LINE L1 -1077 6731 6563 500 333 122 28 chr15 33585981 33586557 -52109197 + L2 LINE L2 2012 2641 -673 810 285 0 0 chr15 33586591 33586805 -52108949 + MIR SINE MIR 48 261 -1 2448 77 0 3 chr15 33587436 33587748 -52108006 - AluY SINE Alu 0 311 1 24 32 0 0 chr15 33589042 33589073 -52106681 + GC_rich Low_complexity Low_complexity 1 31 0 233 197 16 0 chr15 33590325 33590386 -52105368 + CT-rich Low_complexity Low_complexity 3 64 0 2481 178 22 31 chr15 33590407 33590438 -52105316 - L1M4 LINE L1 -984 5162 5132 2054 156 0 0 chr15 33590438 33590740 -52105014 - AluSx SINE Alu -10 302 1 2481 178 22 31 chr15 33590740 33591216 -52104538 - L1M4 LINE L1 -1014 5132 4658 2237 114 3 0 chr15 33591216 33591513 -52104241 - AluSp SINE Alu -15 298 1 2481 178 22 31 chr15 33591513 33591550 -52104204 - L1M4 LINE L1 -1488 4658 4622 1533 230 224 23 chr15 33591611 33591759 -52103995 + L2 LINE L2 2357 2474 -839 2390 85 3 0 chr15 33591759 33592064 -52103690 + AluSx SINE Alu 1 306 -6 1533 230 224 23 chr15 33592064 33592739 -52103015 + L2 LINE L2 2474 3312 -1 668 112 0 0 chr15 33592781 33592870 -52102884 - 5S rRNA rRNA -31 90 2 302 136 0 0 chr15 33593200 33593244 -52102510 - AluSq/x SINE Alu -172 131 88 637 200 118 6 chr15 33593786 33593956 -52101798 + MER53 DNA DNA 1 189 0 412 325 25 0 chr15 33594065 33594222 -52101532 - MIR3 SINE MIR 0 208 48 21 36 0 0 chr15 33594771 33594799 -52100955 + AT_rich Low_complexity Low_complexity 1 28 0 1114 153 40 54 chr15 33595659 33595881 -52099873 + MER20 DNA MER1_type 1 219 0 201 210 180 80 chr15 33595992 33596039 -52099715 + MER5B DNA MER1_type 69 110 -68 192 77 0 0 chr15 33596039 33596065 -52099689 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 201 210 180 80 chr15 33596065 33596117 -52099637 + MER5B DNA MER1_type 110 178 0 359 303 170 12 chr15 33596560 33596725 -52099029 - MIR3 SINE MIR -3 205 15 235 304 82 64 chr15 33597077 33597248 -52098506 + L2 LINE L2 2698 2871 -443 280 74 0 56 chr15 33597248 33597302 -52098452 + (TTCCC)n Simple_repeat Simple_repeat 3 53 0 1567 153 0 4 chr15 33597320 33597548 -52098206 - AluSx SINE Alu -80 232 6 5129 52 2 0 chr15 33597865 33598455 -52097299 + L1PA6 LINE L1 5545 6135 -19 216 0 0 0 chr15 33598455 33598479 -52097275 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 316 0 51 chr15 33598514 33598631 -52097123 - MER5B DNA MER1_type -67 111 1 278 265 184 0 chr15 33598655 33598753 -52097001 - MIR SINE MIR -76 132 17 953 148 59 0 chr15 33598905 33599074 -52096680 + MER5A DNA MER1_type 11 189 0 510 208 69 21 chr15 33599275 33599419 -52096335 - MIR SINE MIR -11 251 101 523 270 29 40 chr15 33599488 33599662 -52096092 - MER5A DNA MER1_type 0 189 18 226 193 18 70 chr15 33600122 33600179 -52095575 + MER5A DNA MER1_type 48 101 -88 2553 63 0 0 chr15 33600201 33600500 -52095254 + AluY SINE Alu 1 299 -12 303 28 0 0 chr15 33600873 33600909 -52094845 + (TA)n Simple_repeat Simple_repeat 1 36 0 463 214 56 0 chr15 33600919 33601045 -52094709 + L1MA10 LINE L1 3229 3361 -2785 2198 128 0 3 chr15 33601047 33601360 -52094394 + AluSx SINE Alu 1 312 0 3530 141 22 69 chr15 33601362 33601423 -52094331 + L1MA10 LINE L1 5141 5203 -1109 1918 159 7 0 chr15 33601423 33601725 -52094029 + AluSx SINE Alu 1 304 -8 3530 141 22 69 chr15 33601725 33602504 -52093250 + L1MA10 LINE L1 5203 5950 -362 906 192 6 0 chr15 33602505 33602661 -52093093 + FRAM SINE Alu 2 158 -18 1876 183 7 53 chr15 33602675 33603086 -52092668 + L1MA10 LINE L1 5936 6327 -7 467 325 76 12 chr15 33603163 33603412 -52092342 + HAL1 LINE L1 2194 2458 -49 655 132 0 0 chr15 33603441 33603532 -52092222 + AluS SINE Alu 2 92 -220 267 250 60 36 chr15 33603903 33603987 -52091767 - MER81 DNA DNA -6 108 23 320 279 81 0 chr15 33603987 33604098 -52091656 + MIR SINE MIR 99 218 -44 36 0 0 0 chr15 33604599 33604635 -52091119 + AT_rich Low_complexity Low_complexity 1 36 0 2192 117 7 0 chr15 33604834 33605141 -52090613 + AluSp SINE Alu 1 309 -4 346 342 188 15 chr15 33605789 33605915 -52089839 - L2 LINE L2 -545 2769 2666 1928 197 31 6 chr15 33605915 33606271 -52089483 + MLT1A1 LTR MaLR 1 365 0 346 342 188 15 chr15 33606271 33606474 -52089280 - L2 LINE L2 -648 2666 2383 674 228 176 5 chr15 33606496 33606689 -52089065 - MIR SINE MIR -36 226 1 185 309 115 30 chr15 33606717 33606882 -52088872 - L2 LINE L2 -984 2330 2152 402 226 29 10 chr15 33608241 33608343 -52087411 + MIR3 SINE MIR 96 199 -9 2093 144 9 103 chr15 33608670 33609099 -52086655 + MLT1B LTR MaLR 2 390 0 239 191 60 36 chr15 33609167 33609251 -52086503 - L1MC4 LINE L1 -198 7844 7759 2030 111 21 0 chr15 33609338 33609617 -52086137 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr15 33609622 33609646 -52086108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 426 327 164 21 chr15 33610628 33611096 -52084658 + L2 LINE L2 2253 2787 -527 1001 189 44 0 chr15 33611179 33611359 -52084395 + MER5A DNA MER1_type 2 189 0 285 287 98 98 chr15 33611984 33612061 -52083693 - MER5A DNA MER1_type -6 183 107 1940 55 0 4 chr15 33612061 33612298 -52083456 + AluY SINE Alu 72 307 -4 285 287 98 98 chr15 33612298 33612394 -52083360 - MER5A DNA MER1_type -81 108 10 1126 240 63 39 chr15 33612497 33612860 -52082894 + HAL1 LINE L1 1 372 -2135 4133 238 17 27 chr15 33612865 33612998 -52082756 + L1MEc LINE L1 2162 2295 -3920 2389 96 0 6 chr15 33612998 33613312 -52082442 + AluSx SINE Alu 1 312 0 4133 238 17 27 chr15 33613312 33614369 -52081385 + L1MEc LINE L1 2295 3306 -2909 1648 115 0 0 chr15 33614369 33614586 -52081168 + AluSq SINE Alu 1 217 -96 2018 132 10 13 chr15 33614693 33615004 -52080750 - AluSg SINE Alu 0 310 1 6137 118 30 24 chr15 33615008 33615978 -52079776 - L1MC1 LINE L1 -13 6320 5345 741 282 177 36 chr15 33616001 33616530 -52079224 + L1M4 LINE L1 4487 5139 -1007 1434 171 56 28 chr15 33616530 33616816 -52078938 + AluJo SINE Alu 1 294 -18 741 282 177 36 chr15 33616816 33616981 -52078773 + L1M4 LINE L1 5139 5279 -867 1561 178 35 0 chr15 33617004 33617263 -52078491 + AluSx SINE Alu 1 268 -44 459 250 10 10 chr15 33617428 33617524 -52078230 - AluJ/FLAM SINE Alu -215 97 2 451 254 62 23 chr15 33617552 33617729 -52078025 - L1M4 LINE L1 -2098 4048 3865 1948 137 3 31 chr15 33618703 33619024 -52076730 - AluSx SINE Alu 0 312 1 26 30 0 0 chr15 33619259 33619292 -52076462 + AT_rich Low_complexity Low_complexity 1 33 0 436 284 37 0 chr15 33619652 33619786 -52075968 - LTR33 LTR ERVL -373 148 10 271 364 39 13 chr15 33619989 33620143 -52075611 - L2 LINE L2 -531 2783 2626 2132 116 10 0 chr15 33620791 33621083 -52074671 + AluSq SINE Alu 1 295 -18 716 186 16 0 chr15 33621083 33621202 -52074552 - AluJo/FLAM SINE Alu -190 122 2 303 272 0 25 chr15 33621221 33621302 -52074452 + Charlie8 DNA MER1_type 114 192 -2225 2312 90 10 0 chr15 33621332 33621632 -52074122 - AluSg SINE Alu -7 303 1 2310 113 0 7 chr15 33621723 33622032 -52073722 - AluSq SINE Alu -6 307 1 212 270 14 14 chr15 33622595 33622669 -52073085 - MIR SINE MIR -111 151 78 1009 97 0 8 chr15 33622673 33622807 -52072947 + AluSq/x SINE Alu 1 133 -180 1983 121 7 4 chr15 33622810 33623118 -52072636 + AluSx SINE Alu 1 309 0 186 363 71 18 chr15 33623685 33623853 -52071901 - MIR SINE MIR -52 210 34 2179 142 6 55 chr15 33623967 33624086 -52071668 + MER7A DNA MER2_type 1 124 -2914 2116 120 3 0 chr15 33624086 33624378 -52071376 - AluSx SINE Alu -19 293 1 2179 142 6 55 chr15 33624378 33624624 -52071130 + MER7A DNA MER2_type 124 346 0 1549 261 94 24 chr15 33624746 33625256 -52070498 - L2 LINE L2 0 3313 2782 274 298 219 0 chr15 33625296 33625410 -52070344 - L2 LINE L2 0 3272 3134 1912 113 153 43 chr15 33625417 33625483 -52070271 - MER47A DNA MER2_type -1957 366 309 1457 169 83 24 chr15 33625483 33625773 -52069981 + AluJo SINE Alu 1 307 -5 1912 113 153 43 chr15 33625773 33626033 -52069721 - MER47A DNA MER2_type -2014 309 4 2075 136 0 7 chr15 33626065 33626359 -52069395 + AluSx SINE Alu 1 292 -20 2167 231 105 65 chr15 33626360 33626683 -52069071 + L1ME3A LINE L1 5254 5563 -607 1890 144 68 37 chr15 33626683 33627009 -52068745 + MER1B DNA MER1_type 1 336 -1 2167 231 105 65 chr15 33627009 33627545 -52068209 + L1ME3A LINE L1 5563 6147 -23 1624 213 70 99 chr15 33627545 33627723 -52068031 + MLT1F LTR MaLR 1 183 -359 1865 170 3 7 chr15 33627723 33628023 -52067731 + AluJo SINE Alu 1 299 -13 1624 213 70 99 chr15 33628023 33628390 -52067364 + MLT1F LTR MaLR 183 530 -12 24 32 0 0 chr15 33628403 33628434 -52067320 + AT_rich Low_complexity Low_complexity 1 31 0 2206 68 29 42 chr15 33629074 33629384 -52066370 + L1PB2 LINE L1 5844 6149 -2 2642 49 0 0 chr15 33629534 33629839 -52065915 + AluY SINE Alu 1 305 -6 1704 184 7 3 chr15 33630442 33630724 -52065030 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 33631008 33631097 -52064657 + AT_rich Low_complexity Low_complexity 1 89 0 673 194 30 37 chr15 33631373 33631507 -52064247 + FLAM_A SINE Alu 1 133 0 2258 80 0 7 chr15 33631767 33632055 -52063699 - AluSx SINE Alu -26 286 1 1497 247 87 16 chr15 33633468 33633940 -52061814 - MLT1H LTR MaLR -4 545 5 226 296 70 0 chr15 33634016 33634087 -52061667 + MIR SINE MIR 76 151 -111 2151 110 20 0 chr15 33634253 33634552 -52061202 - AluSx SINE Alu -7 305 1 567 238 110 26 chr15 33634566 33634793 -52060961 - HAL1 LINE L1 -5 2502 2257 2109 112 0 3 chr15 33634852 33635137 -52060617 + AluSx SINE Alu 10 293 -19 24 0 0 0 chr15 33635726 33635750 -52060004 + AT_rich Low_complexity Low_complexity 1 24 0 2048 92 28 7 chr15 33636518 33636801 -52058953 + AluSx SINE Alu 1 289 -23 2166 102 7 0 chr15 33637346 33637641 -52058113 - AluSc SINE Alu -12 297 1 2274 127 107 35 chr15 33637754 33638157 -52057597 + MSTB1 LTR MaLR 1 432 0 599 72 24 24 chr15 33638306 33638389 -52057365 - AluSx SINE Alu -16 294 212 1140 87 7 7 chr15 33638390 33638539 -52057215 - AluSx SINE Alu -163 149 1 1378 173 48 0 chr15 33638542 33638790 -52056964 - AluJo SINE Alu -7 305 46 182 138 0 0 chr15 33639682 33639711 -52056043 - L2 LINE L2 -18 3295 3267 2481 69 3 0 chr15 33640459 33640763 -52054991 - AluY SINE Alu -6 305 1 2508 66 0 3 chr15 33640946 33641250 -52054504 + AluY SINE Alu 1 303 -8 2378 83 3 3 chr15 33641305 33641605 -52054149 - AluSp SINE Alu -13 300 1 283 206 0 44 chr15 33641618 33641686 -52054068 + MIR3 SINE MIR 105 169 -39 1439 146 123 19 chr15 33641861 33642129 -52053625 + AluSg SINE Alu 1 296 -14 2142 125 0 7 chr15 33642964 33643261 -52052493 - AluSx SINE Alu -17 295 1 2189 78 24 17 chr15 33643386 33643679 -52052075 + AluSq SINE Alu 1 295 -18 207 279 153 42 chr15 33646465 33646655 -52049099 + L2 LINE L2 2276 2486 -828 2299 160 66 75 chr15 33646809 33646926 -52048828 + Tigger7 DNA MER2_type 1 118 -2369 2028 140 3 7 chr15 33646926 33647226 -52048528 + AluSx SINE Alu 1 299 -13 2299 160 66 75 chr15 33647226 33647639 -52048115 + Tigger7 DNA MER2_type 118 526 -1961 589 163 0 0 chr15 33647633 33647725 -52048029 + Tigger7 DNA MER2_type 2396 2487 0 * 979 162 39 0 chr15 33650529 33650683 -52045071 - AluSg/x SINE Alu -17 293 134 2470 82 0 0 chr15 33650782 33651087 -52044667 + AluSc SINE Alu 1 305 -4 1759 168 10 13 chr15 33652116 33652420 -52043334 + AluJo SINE Alu 1 303 -9 2275 109 0 3 chr15 33652422 33652735 -52043019 + AluSx SINE Alu 1 312 0 562 156 0 0 chr15 33652912 33653002 -52042752 + 5S rRNA rRNA 1 90 -31 1773 165 7 0 chr15 33653156 33653429 -52042325 - AluSx SINE Alu -2 310 36 207 0 0 0 chr15 33653921 33653944 -52041810 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2007 139 13 7 chr15 33653953 33654262 -52041492 + AluSx SINE Alu 1 311 -1 339 314 145 0 chr15 33654262 33654421 -52041333 + MIR SINE MIR 61 242 -20 24 96 0 0 chr15 33654671 33654744 -52041010 + AT_rich Low_complexity Low_complexity 1 73 0 1729 149 66 0 chr15 33654771 33655060 -52040694 - AluSx SINE Alu -4 308 1 1002 100 8 0 chr15 33655157 33655287 -52040467 + AluSq/x SINE Alu 1 131 -182 2311 82 3 3 chr15 33655836 33656129 -52039625 + AluSp SINE Alu 1 293 -20 301 105 0 0 chr15 33657388 33657426 -52038328 + Tigger2 DNA MER2_type 1 38 -2680 * 659 245 43 0 chr15 33657425 33657564 -52038190 - MER8 DNA MER2_type -93 146 2 180 342 112 6 chr15 33657604 33657765 -52037989 + L2 LINE L2 2864 3041 -231 2155 122 0 0 chr15 33658176 33658472 -52037282 + AluSx SINE Alu 1 296 -16 2416 72 7 0 chr15 33658601 33658894 -52036860 + AluSp SINE Alu 2 296 -17 21 0 0 0 chr15 33659459 33659480 -52036274 + AT_rich Low_complexity Low_complexity 1 21 0 606 143 0 0 chr15 33659855 33659939 -52035815 + AluSx SINE Alu 2 85 -227 2388 75 3 7 chr15 33659940 33660246 -52035508 + AluSg SINE Alu 1 305 -5 1535 121 0 9 chr15 33660246 33660467 -52035287 + AluSx SINE Alu 71 291 -19 304 262 173 24 chr15 33660935 33661103 -52034651 - MIR SINE MIR -64 198 6 2240 102 7 0 chr15 33661722 33662015 -52033739 + AluSx SINE Alu 1 295 -17 1455 142 24 109 chr15 33663978 33664308 -52031446 - AluYb8 SINE Alu -16 302 1 282 56 0 0 chr15 33664575 33664611 -52031143 - Alu SINE Alu -265 37 2 24 0 0 0 chr15 33664783 33664807 -52030947 + AT_rich Low_complexity Low_complexity 1 24 0 1839 156 17 23 chr15 33665032 33665333 -52030421 - AluJb SINE Alu -13 299 1 295 279 0 0 chr15 33665806 33665874 -52029880 + L2 LINE L2 3240 3307 -6 1268 266 11 43 chr15 33666904 33667272 -52028482 + MLT1A1 LTR MaLR 10 365 0 2123 121 24 0 chr15 33667954 33668244 -52027510 - AluSx SINE Alu -15 297 1 324 120 0 0 chr15 33668491 33668541 -52027213 + (TG)n Simple_repeat Simple_repeat 2 51 0 1711 173 3 20 chr15 33668587 33668882 -52026872 + AluJo SINE Alu 1 290 -22 738 180 16 0 chr15 33668899 33669021 -52026733 + FLAM_C SINE Alu 3 126 -17 2319 105 0 3 chr15 33669164 33669468 -52026286 + AluSq SINE Alu 1 303 -10 25 65 0 0 chr15 33669472 33669518 -52026236 + AT_rich Low_complexity Low_complexity 1 46 0 276 250 120 0 chr15 33669523 33669631 -52026123 + L1ME4a LINE L1 5982 6102 -19 2259 64 0 0 chr15 33669631 33669942 -52025812 - AluY SINE Alu 0 311 1 909 123 0 0 chr15 33670080 33670202 -52025552 + AluSg SINE Alu 1 122 -188 2376 68 3 0 chr15 33670203 33670497 -52025257 + AluY SINE Alu 1 295 -16 1871 104 39 46 chr15 33670500 33670807 -52024947 + AluSg SINE Alu 1 305 -5 237 258 67 34 chr15 33670819 33670908 -52024846 + Charlie4 DNA MER1_type 1869 1960 -1 16196 119 25 20 chr15 33671215 33671873 -52023881 - Tigger1 DNA MER2_type 0 2418 1765 2562 63 0 0 chr15 33671873 33672173 -52023581 - AluY SINE Alu -11 300 1 16196 119 25 20 chr15 33672173 33673742 -52022012 - Tigger1 DNA MER2_type -653 1765 176 1904 136 16 19 chr15 33673742 33674050 -52021704 + AluSq SINE Alu 1 307 -6 16196 119 25 20 chr15 33674050 33674227 -52021527 - Tigger1 DNA MER2_type -2242 176 1 2209 125 0 3 chr15 33674527 33674831 -52020923 - AluSx SINE Alu -9 303 1 196 259 56 19 chr15 33675404 33675458 -52020296 - L2 LINE L2 -16 3256 3201 515 92 0 0 chr15 33675473 33675538 -52020216 + Alu SINE Alu 2 66 -244 2361 65 3 13 chr15 33675978 33676286 -52019468 + AluY SINE Alu 1 305 -6 2252 68 16 16 chr15 33676904 33677211 -52018543 - AluSp SINE Alu -6 307 1 2258 79 3 44 chr15 33677236 33677551 -52018203 + AluSp SINE Alu 1 302 -11 439 232 66 114 chr15 33677848 33677988 -52017766 + MIR SINE MIR 52 197 -65 923 184 82 6 chr15 33677988 33678146 -52017608 + FAM SINE Alu 4 173 -2 2130 133 3 3 chr15 33678155 33678463 -52017291 + AluSg SINE Alu 1 308 -2 439 232 66 114 chr15 33678463 33678523 -52017231 + MIR SINE MIR 205 252 -10 2271 71 3 0 chr15 33679305 33679587 -52016167 - AluSg SINE Alu -26 284 2 504 82 0 118 chr15 33679988 33680073 -52015681 - AluSq/x SINE Alu -180 133 59 653 208 142 96 chr15 33680181 33680486 -52015268 + LTR37B LTR ERV1 12 344 -124 1528 171 27 27 chr15 33680486 33680785 -52014969 - AluJb SINE Alu -13 299 1 653 208 142 96 chr15 33680785 33680916 -52014838 + LTR37B LTR ERV1 344 468 0 941 196 0 22 chr15 33681078 33681257 -52014497 + FAM SINE Alu 1 175 0 617 170 14 109 chr15 33681267 33681414 -52014340 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr15 33681516 33681540 -52014214 + AT_rich Low_complexity Low_complexity 1 24 0 2146 104 0 26 chr15 33681580 33681887 -52013867 - AluSc SINE Alu -10 299 1 1820 157 14 7 chr15 33681891 33682172 -52013582 - AluJb SINE Alu -15 297 15 2129 109 7 3 chr15 33682192 33682486 -52013268 + AluSq SINE Alu 1 295 -18 1688 155 21 28 chr15 33682525 33682816 -52012938 + AluJo SINE Alu 1 289 -23 1445 193 33 17 chr15 33682993 33683075 -52012679 - AluJo SINE Alu -6 306 227 2885 77 41 0 chr15 33683075 33683437 -52012317 + MER51B LTR ERV1 1 377 0 1445 193 33 17 chr15 33683437 33683655 -52012099 - AluJo SINE Alu -85 227 1 3543 99 22 38 chr15 33684017 33684522 -52011232 + LOR1a LTR ERV1 1 497 0 2287 109 0 0 chr15 33685243 33685545 -52010209 + AluSg SINE Alu 1 302 -8 381 113 0 0 chr15 33685992 33686045 -52009709 - MER4E LTR ERV1 0 766 714 1492 263 120 63 chr15 33686053 33686292 -52009462 - L2 LINE L2 -221 3092 2868 2327 54 9 41 chr15 33686292 33686608 -52009146 + AluY SINE Alu 1 306 -5 1492 263 120 63 chr15 33686608 33687064 -52008690 - L2 LINE L2 -445 2868 2350 2159 119 10 10 chr15 33687064 33687374 -52008380 + AluSx SINE Alu 1 310 -2 1492 263 120 63 chr15 33687374 33687485 -52008269 - L2 LINE L2 -963 2350 2247 2377 83 0 0 chr15 33687958 33688248 -52007506 - AluSc SINE Alu -18 291 2 567 256 158 55 chr15 33688337 33688591 -52007163 - L2 LINE L2 0 3313 3034 1365 118 0 94 chr15 33688711 33688956 -52006798 + AluSx SINE Alu 59 280 -32 877 152 0 7 chr15 33689181 33689319 -52006435 + AluSq/x SINE Alu 1 137 -176 1561 112 130 32 chr15 33689321 33689598 -52006156 + AluSq SINE Alu 5 308 -5 2064 119 3 7 chr15 33689598 33689893 -52005861 + AluSg SINE Alu 1 294 -16 518 282 125 33 chr15 33689963 33690250 -52005504 - L1MC/D LINE L1 -615 5547 5269 388 260 97 25 chr15 33690373 33690691 -52005063 - L1MC/D LINE L1 -1038 5108 4751 2267 101 3 3 chr15 33690755 33691051 -52004703 + AluSx SINE Alu 2 297 -15 1909 145 0 17 chr15 33691602 33691899 -52003855 - AluJb SINE Alu -20 292 1 731 158 16 31 chr15 33694021 33694148 -52001606 + FLAM_C SINE Alu 1 125 -8 1201 123 6 0 chr15 33694160 33694331 -52001423 + AluY SINE Alu 1 172 -139 1258 125 44 138 chr15 33694333 33694449 -52001305 + AluSx SINE Alu 21 146 -166 2094 113 3 7 chr15 33694449 33694742 -52001012 + AluSp SINE Alu 1 292 -21 1258 125 44 138 chr15 33694742 33694922 -52000832 + AluSx SINE Alu 146 289 -23 746 223 61 0 chr15 33694935 33695083 -52000671 + FRAM SINE Alu 2 158 -8 2120 116 7 0 chr15 33695250 33695535 -52000219 - AluSx SINE Alu -25 287 1 2026 84 74 7 chr15 33695812 33696097 -51999657 - AluSx SINE Alu 0 312 9 22 65 0 0 chr15 33696450 33696481 -51999273 + GC_rich Low_complexity Low_complexity 1 31 0 1961 119 0 8 chr15 33696708 33696976 -51998778 - AluSx SINE Alu -46 266 1 2189 78 24 17 chr15 33697101 33697394 -51998360 + AluSq SINE Alu 1 295 -18 2044 69 7 52 chr15 33699035 33699340 -51996414 + AluSq SINE Alu 7 297 -16 2106 78 7 7 chr15 33701220 33701515 -51994239 + AluSq SINE Alu 1 295 -18 2094 98 3 44 chr15 33702451 33702768 -51992986 + AluSp SINE Alu 1 304 -9 209 259 19 19 chr15 33703086 33703140 -51992614 + MIR SINE MIR 20 73 -135 1882 154 0 0 chr15 33703284 33703577 -51992177 + AluSx SINE Alu 6 298 -14 2152 114 0 16 chr15 33703601 33703737 -51992017 + AluSx SINE Alu 1 138 -174 2213 96 3 0 chr15 33703737 33704038 -51991716 + AluSp SINE Alu 1 302 -11 2152 114 0 16 chr15 33704038 33704216 -51991538 + AluSx SINE Alu 138 310 -2 297 291 42 4 chr15 33704520 33704619 -51991135 - MIR3 SINE MIR -28 180 79 783 225 30 6 chr15 33704721 33704890 -51990864 + FAM SINE Alu 1 173 -2 1308 148 66 62 chr15 33704955 33705084 -51990670 + AluJo SINE Alu 11 138 -174 2361 68 0 0 chr15 33705084 33705380 -51990374 + AluY SINE Alu 1 296 -15 1308 148 66 62 chr15 33705380 33705507 -51990247 + AluJo SINE Alu 138 268 -44 2372 66 3 7 chr15 33705574 33705877 -51989877 + AluSp SINE Alu 1 302 -11 2288 68 0 0 chr15 33706002 33706295 -51989459 - AluY SINE Alu -18 293 1 1750 97 4 19 chr15 33706298 33706566 -51989188 - AluSq SINE Alu -6 307 44 2147 107 3 0 chr15 33706695 33706995 -51988759 + AluSx SINE Alu 1 301 -11 1683 178 78 84 chr15 33707224 33707284 -51988470 - LTR2B LTR ERV1 0 490 431 2159 80 42 0 chr15 33707284 33707573 -51988181 + AluSq SINE Alu 1 301 -12 1683 178 78 84 chr15 33707573 33707974 -51987780 - LTR2B LTR ERV1 -59 431 32 1999 92 0 18 chr15 33708215 33708497 -51987257 - AluSc SINE Alu -30 279 3 938 335 92 20 chr15 33708622 33708775 -51986979 + L2 LINE L2 2402 2543 -770 2011 112 0 7 chr15 33708775 33709092 -51986662 + AluSx SINE Alu 1 315 0 938 335 92 20 chr15 33709092 33709553 -51986201 + L2 LINE L2 2543 3142 -171 2103 78 32 6 chr15 33709833 33710205 -51985549 - LTR7 LTR ERV1 -18 432 1 1960 109 27 10 chr15 33711021 33711314 -51984440 - AluY SINE Alu -13 298 1 1374 180 42 21 chr15 33711326 33711499 -51984255 - AluJo SINE Alu -17 295 112 198 0 0 0 chr15 33711499 33711521 -51984233 + (TG)n Simple_repeat Simple_repeat 2 23 0 1374 180 42 21 chr15 33711521 33711636 -51984118 - AluJo SINE Alu -200 112 1 2025 108 0 19 chr15 33711817 33712124 -51983630 + AluSq SINE Alu 4 304 -9 2147 103 7 3 chr15 33713006 33713306 -51982448 + AluSx SINE Alu 1 301 -11 1673 166 0 10 chr15 33713319 33713615 -51982139 + AluSx SINE Alu 3 295 -17 208 274 70 76 chr15 33713658 33713704 -51982050 - L2 LINE L2 -5 3308 3263 2106 96 3 10 chr15 33713704 33713996 -51981758 + AluSp SINE Alu 1 290 -23 414 0 0 0 chr15 33713999 33714045 -51981709 + (TAA)n Simple_repeat Simple_repeat 3 48 0 208 274 70 76 chr15 33714045 33714151 -51981603 - L2 LINE L2 -52 3261 3153 205 304 140 41 chr15 33714246 33714417 -51981337 - L2 LINE L2 -157 3156 2969 * 267 314 172 30 chr15 33714403 33714572 -51981182 - L2 LINE L2 -995 2319 2127 594 268 145 68 chr15 33714680 33714866 -51980888 - L2 LINE L2 -1246 2068 1898 2009 113 7 0 chr15 33714866 33715177 -51980577 + AluSq SINE Alu 1 313 0 594 268 145 68 chr15 33715177 33715355 -51980399 - L2 LINE L2 -1416 1898 1675 1547 156 14 34 chr15 33715356 33715651 -51980103 - AluJb SINE Alu -15 297 9 282 154 0 0 chr15 33715651 33715690 -51980064 - Alu SINE Alu -258 45 7 817 139 0 8 chr15 33715828 33715957 -51979797 + AluSq/x SINE Alu 7 134 -179 1879 143 0 3 chr15 33715958 33716251 -51979503 + AluSx SINE Alu 1 292 -20 1307 228 3 49 chr15 33716251 33716576 -51979178 + MSTD LTR MaLR 87 396 0 1729 150 5 95 chr15 33716676 33716744 -51979010 + MER31A LTR ERV1 11 84 -401 1904 112 4 0 chr15 33716744 33717013 -51978741 - AluSg SINE Alu -40 270 1 2141 95 3 10 chr15 33717022 33717317 -51978437 - AluSp SINE Alu -20 293 1 1729 150 5 95 chr15 33717317 33717638 -51978116 + MER31A LTR ERV1 92 374 -111 336 130 0 19 chr15 33717960 33718014 -51977740 + LTR54B LTR ERV1 1 53 -445 4771 104 7 13 chr15 33718014 33718686 -51977068 - LTR8 LTR ERV1 0 691 24 1271 113 54 0 chr15 33718686 33718872 -51976882 - AluSq SINE Alu -117 196 1 656 186 47 71 chr15 33718874 33719086 -51976668 + LTR54B LTR ERV1 119 335 -163 4022 109 62 73 chr15 33719086 33719209 -51976545 - LTR8 LTR ERV1 0 691 568 2217 78 7 7 chr15 33719209 33719518 -51976236 - AluSg1 SINE Alu 0 309 1 4022 109 62 73 chr15 33719518 33719790 -51975964 - LTR8 LTR ERV1 -123 568 294 2246 74 3 0 chr15 33719790 33720086 -51975668 - AluSp SINE Alu -16 297 1 4022 109 62 73 chr15 33720086 33720113 -51975641 - LTR8 LTR ERV1 -397 294 268 1906 138 0 3 chr15 33720113 33720404 -51975350 - AluSq SINE Alu -22 291 2 4022 109 62 73 chr15 33720404 33720636 -51975118 - LTR8 LTR ERV1 -423 268 41 2310 84 0 3 chr15 33720636 33720946 -51974808 - AluY SINE Alu -2 309 1 4022 109 62 73 chr15 33720946 33720987 -51974767 - LTR8 LTR ERV1 -650 41 1 656 186 47 71 chr15 33720987 33721032 -51974722 + LTR54B LTR ERV1 335 410 -88 566 161 0 97 chr15 33721880 33722066 -51973688 - AluY SINE Alu -142 169 2 285 119 0 0 chr15 33722066 33722108 -51973646 - LTR8 LTR ERV1 -649 42 1 * 397 252 41 8 chr15 33722108 33722211 -51973543 + LTR54B LTR ERV1 369 475 -23 2104 112 0 0 chr15 33722212 33722507 -51973247 + AluSx SINE Alu 1 295 -17 2055 104 13 7 chr15 33722510 33722809 -51972945 + AluSq SINE Alu 1 301 -12 2227 80 3 13 chr15 33722809 33723108 -51972646 + AluY SINE Alu 1 296 -15 21 36 0 0 chr15 33723580 33723608 -51972146 + AT_rich Low_complexity Low_complexity 1 28 0 2237 89 0 0 chr15 33724194 33724485 -51971269 - AluY SINE Alu -20 291 1 228 35 0 0 chr15 33724633 33724662 -51971092 + (CA)n Simple_repeat Simple_repeat 1 29 0 220 149 27 14 chr15 33725025 33725099 -51970655 + (CCCA)n Simple_repeat Simple_repeat 1 75 0 294 220 12 40 chr15 33725145 33725318 -51970436 + A-rich Low_complexity Low_complexity 5 172 0 1280 149 0 5 chr15 33725330 33725538 -51970216 - AluY SINE Alu -104 207 1 324 102 0 0 chr15 33725685 33725734 -51970020 + (CA)n Simple_repeat Simple_repeat 2 50 0 2238 97 0 13 chr15 33725793 33726103 -51969651 - AluY SINE Alu -5 306 1 828 155 0 0 chr15 33726112 33726241 -51969513 - FLAM_C SINE Alu -3 130 2 2152 86 17 0 chr15 33726284 33726576 -51969178 - AluSp SINE Alu -16 297 1 2114 112 0 13 chr15 33726989 33727303 -51968451 + AluSx SINE Alu 1 310 -2 1844 144 3 0 chr15 33727347 33727631 -51968123 + AluSx SINE Alu 5 289 -23 2210 73 0 51 chr15 33727654 33727970 -51967784 + AluY SINE Alu 1 300 -11 268 157 43 0 chr15 33728024 33728094 -51967660 + (TA)n Simple_repeat Simple_repeat 2 74 0 523 49 99 0 chr15 33728112 33728254 -51967500 + (TA)n Simple_repeat Simple_repeat 2 157 0 341 204 82 31 chr15 33728257 33728355 -51967399 + L1MCa LINE L1 1963 2065 -4361 31 26 0 0 chr15 33728355 33728393 -51967361 + AT_rich Low_complexity Low_complexity 1 38 0 894 28 18 0 chr15 33728877 33728986 -51966768 + BC200 scRNA scRNA 2 112 -88 434 344 58 69 chr15 33729548 33730013 -51965741 + MLT1K LTR MaLR 106 565 -23 2318 85 3 0 chr15 33730107 33730412 -51965342 - AluSp SINE Alu -7 306 1 1638 146 17 7 chr15 33730412 33730700 -51965054 - L1M3 LINE L1 -575 5608 5318 1767 151 13 7 chr15 33730704 33731009 -51964745 - AluSx SINE Alu -5 307 1 857 149 8 0 chr15 33731009 33731143 -51964611 - AluSq/x SINE Alu -177 135 1 2062 106 14 0 chr15 33731148 33731441 -51964313 - AluSx SINE Alu -15 297 1 234 224 86 0 chr15 33731532 33731590 -51964164 + L2 LINE L2 3210 3272 0 2077 185 83 25 chr15 33731807 33732277 -51963477 + MLT1D LTR MaLR 1 497 -8 1912 104 72 0 chr15 33732413 33732691 -51963063 + AluSq SINE Alu 1 298 -15 678 221 0 0 chr15 33732836 33732967 -51962787 + AluSp SINE Alu 14 144 -169 279 0 0 0 chr15 33733301 33733332 -51962422 + (CA)n Simple_repeat Simple_repeat 1 31 0 703 139 9 9 chr15 33733334 33733449 -51962305 - FRAM SINE Alu -11 165 51 3969 58 0 10 chr15 33733462 33733965 -51961789 + L1P LINE L1 3672 4169 -1977 208 0 0 133 chr15 33733969 33734052 -51961702 + (TCTCCC)n Simple_repeat Simple_repeat 4 75 0 2000 190 83 30 chr15 33734808 33735277 -51960477 + MLT1D LTR MaLR 4 497 -8 1889 108 72 0 chr15 33735413 33735692 -51960062 + AluSq SINE Alu 1 299 -14 1885 149 0 10 chr15 33735837 33736132 -51959622 + AluSx SINE Alu 14 305 -7 24 67 0 0 chr15 33736259 33736304 -51959450 + AT_rich Low_complexity Low_complexity 1 45 0 1672 155 0 33 chr15 33736430 33736734 -51959020 - AluJo SINE Alu -18 294 1 1366 171 91 69 chr15 33737007 33737369 -51958385 + MLT1A2 LTR MaLR 1 370 -4 2002 102 28 3 chr15 33737390 33737675 -51958079 - AluSg SINE Alu -18 292 1 2062 76 44 4 chr15 33737716 33737991 -51957763 - AluY SINE Alu -25 286 1 2053 122 0 3 chr15 33738011 33738305 -51957449 - AluSg SINE Alu -17 293 1 2139 100 7 0 chr15 33738403 33738694 -51957060 - AluSg SINE Alu -17 293 1 3355 26 0 0 chr15 33738738 33739123 -51956631 - L1PA5 LINE L1 0 6154 5770 1898 126 0 0 chr15 33739437 33739739 -51956015 - AluSx SINE Alu 0 306 5 10016 41 5 1 chr15 33740743 33742360 -51953394 - L1PA5 LINE L1 -371 5783 4164 5764 106 37 31 chr15 33742361 33744708 -51951046 - SVA Other Other -518 1386 1 249 151 57 0 chr15 33744709 33744762 -51950992 + G-rich Low_complexity Low_complexity 1 56 0 3969 58 0 10 chr15 33744763 33745266 -51950488 - L1P LINE L1 -1977 4169 3672 691 142 9 9 chr15 33745279 33745392 -51950362 + FRAM SINE Alu 51 163 -13 360 0 0 0 chr15 33745394 33745434 -51950320 + (TG)n Simple_repeat Simple_repeat 2 41 0 2111 97 0 3 chr15 33745462 33745750 -51950004 + AluY SINE Alu 1 287 -24 28 102 0 0 chr15 33745750 33745848 -51949906 + AT_rich Low_complexity Low_complexity 1 98 0 2195 102 7 0 chr15 33745859 33746163 -51949591 - AluSq SINE Alu -7 306 1 1098 177 8 20 chr15 33746254 33746503 -51949251 + AluSq SINE Alu 1 246 -67 590 77 0 0 chr15 33746894 33746972 -51948782 - AluS SINE Alu -235 78 1 1999 123 0 10 chr15 33747063 33747373 -51948381 + AluSq SINE Alu 1 307 -6 2009 141 0 0 chr15 33747379 33747683 -51948071 - AluSx SINE Alu -8 304 1 2026 123 7 0 chr15 33748500 33748801 -51946953 + AluSx SINE Alu 1 303 -9 291 302 77 12 chr15 33749061 33749230 -51946524 + HAL1b LINE L1 495 674 -674 1711 166 10 30 chr15 33749304 33749606 -51946148 - AluJo SINE Alu -16 296 1 275 176 0 108 chr15 33749629 33749652 -51946102 + AluYb8 SINE Alu 122 136 -172 2161 112 23 3 chr15 33749652 33749956 -51945798 + AluSq SINE Alu 3 312 -1 1648 81 5 9 chr15 33750599 33750809 -51944945 - AluSg SINE Alu -99 211 3 581 254 29 74 chr15 33751011 33751232 -51944522 + L1MEd LINE L1 700 899 -5220 2503 72 0 0 chr15 33751232 33751536 -51944218 - AluY SINE Alu -7 304 1 581 254 29 74 chr15 33751536 33751692 -51944062 + L1MEd LINE L1 899 1060 -5059 864 168 7 0 chr15 33751705 33751842 -51943912 + AluSq/x SINE Alu 1 138 -175 812 262 35 39 chr15 33752338 33752620 -51943134 + AluSg SINE Alu 15 295 -15 2099 139 0 0 chr15 33752675 33752970 -51942784 - AluSx SINE Alu -5 307 13 345 200 71 0 chr15 33753189 33753259 -51942495 + AluJ/FRAM SINE Alu 222 296 -6 24 0 0 0 chr15 33753265 33753289 -51942465 + AT_rich Low_complexity Low_complexity 1 24 0 258 301 90 37 chr15 33753337 33753692 -51942062 + L1M4 LINE L1 3386 3759 -2387 234 0 0 0 chr15 33753692 33753718 -51942036 + (TA)n Simple_repeat Simple_repeat 2 27 0 2188 126 0 0 chr15 33753732 33754034 -51941720 - AluSx SINE Alu -8 304 3 368 303 197 14 chr15 33754087 33754305 -51941449 + MIR SINE MIR 5 262 0 2303 86 3 10 chr15 33754383 33754685 -51941069 - AluSp SINE Alu -12 301 2 17838 136 53 26 chr15 33754781 33757096 -51938658 + L1PB1 LINE L1 1 2254 -4608 2350 90 0 13 chr15 33757096 33757397 -51938357 + AluSg SINE Alu 1 297 -13 17838 136 53 26 chr15 33757397 33757996 -51937758 + L1PB1 LINE L1 2254 2836 -4026 2398 103 0 0 chr15 33757996 33758306 -51937448 - AluSg SINE Alu 0 310 1 17838 136 53 26 chr15 33758306 33758459 -51937295 + L1PB1 LINE L1 2836 2983 -3879 2196 78 4 7 chr15 33758459 33758784 -51936970 - AluSg SINE Alu 0 324 1 17838 136 53 26 chr15 33758784 33759072 -51936682 + L1PB1 LINE L1 2983 3262 -3600 2266 111 0 0 chr15 33759072 33759369 -51936385 - AluSx SINE Alu -15 297 1 2208 75 0 87 chr15 33759379 33759700 -51936054 - AluY SINE Alu -18 293 1 17838 136 53 26 chr15 33759700 33760354 -51935400 + L1PB1 LINE L1 3270 4123 -2739 4601 206 17 37 chr15 33760491 33761293 -51934461 + L1 LINE L1 3464 4236 -2626 1917 127 17 7 chr15 33761293 33761584 -51934170 - AluSx SINE Alu -18 294 1 4601 206 17 37 chr15 33761584 33761984 -51933770 + L1 LINE L1 4236 4642 -2220 781 236 5 19 chr15 33762530 33762746 -51933008 + AluY SINE Alu 75 287 -24 28 102 0 0 chr15 33762746 33762844 -51932910 + AT_rich Low_complexity Low_complexity 1 98 0 1980 139 13 0 chr15 33762855 33763156 -51932598 - AluSx SINE Alu -7 305 1 6082 201 17 45 chr15 33763158 33763556 -51932198 + L1PB1 LINE L1 4254 4661 -2206 1944 137 0 11 chr15 33763556 33763840 -51931914 + AluSx SINE Alu 1 281 -31 360 0 0 0 chr15 33763840 33763880 -51931874 + (CA)n Simple_repeat Simple_repeat 1 40 0 6082 201 17 45 chr15 33763880 33765392 -51930362 + L1PB1 LINE L1 4660 6212 -655 2246 96 44 0 chr15 33765392 33765685 -51930069 + AluSp SINE Alu 2 307 -6 6082 201 17 45 chr15 33765685 33766095 -51929659 + L1PB1 LINE L1 6212 6632 -235 351 44 0 0 chr15 33766095 33766140 -51929614 + (CA)n Simple_repeat Simple_repeat 2 46 0 6082 201 17 45 chr15 33766140 33766270 -51929484 + L1PB1 LINE L1 6632 6629 -238 2310 113 3 0 chr15 33766270 33766571 -51929183 - AluSp SINE Alu -11 302 1 6082 201 17 45 chr15 33766571 33766803 -51928951 + L1PB1 LINE L1 6628 6865 -2 1767 163 10 14 chr15 33766846 33767140 -51928614 + AluJb SINE Alu 1 293 -19 232 258 5 70 chr15 33767677 33767863 -51927891 + T-rich Low_complexity Low_complexity 4 177 0 519 245 63 31 chr15 33768028 33768187 -51927567 + MIR3 SINE MIR 8 171 -37 251 35 0 0 chr15 33768250 33768279 -51927475 + (CA)n Simple_repeat Simple_repeat 2 30 0 828 147 43 37 chr15 33768688 33768851 -51926903 + MER3 DNA MER1_type 6 122 -87 2179 100 10 3 chr15 33769758 33770067 -51925687 + AluSq SINE Alu 1 311 -2 2409 235 119 41 chr15 33770090 33770181 -51925573 - MER21B LTR ERV1 -11 852 770 2586 53 0 28 chr15 33770181 33770500 -51925254 - AluY SINE Alu -1 310 1 2409 235 119 41 chr15 33770500 33770765 -51924989 - MER21B LTR ERV1 -93 770 527 2471 74 0 0 chr15 33770765 33771062 -51924692 - AluSx SINE Alu -15 297 1 2409 235 119 41 chr15 33771062 33771255 -51924499 - MER21B LTR ERV1 -336 527 350 1913 133 10 23 chr15 33771255 33771555 -51924199 - AluJb SINE Alu -15 297 2 1849 147 0 29 chr15 33771558 33771870 -51923884 - AluJo SINE Alu -8 304 2 2409 235 119 41 chr15 33771870 33772098 -51923656 - MER21B LTR ERV1 -514 349 8 383 270 0 22 chr15 33772114 33772203 -51923551 - MER21B LTR ERV1 -776 87 1 2556 57 0 0 chr15 33772225 33772523 -51923231 - AluY SINE Alu -13 298 1 2226 108 0 0 chr15 33772564 33772850 -51922904 - AluSx SINE Alu -26 286 1 2068 131 10 0 chr15 33773048 33773346 -51922408 + AluSx SINE Alu 3 303 -9 2083 137 0 9 chr15 33773594 33773909 -51921845 + AluSx SINE Alu 1 312 0 318 219 14 0 chr15 33773923 33773996 -51921758 + L1MCa LINE L1 1995 2068 -4358 * 349 289 0 0 chr15 33773963 33774053 -51921701 + L1MC4 LINE L1 6894 6983 -1339 210 191 0 0 chr15 33774053 33774095 -51921659 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr15 33774110 33774131 -51921623 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 33774338 33774366 -51921388 + AT_rich Low_complexity Low_complexity 1 28 0 2340 96 0 3 chr15 33774419 33774731 -51921023 + AluSx SINE Alu 1 311 -1 314 254 87 89 chr15 33774822 33774964 -51920790 + L1M4 LINE L1 4151 4292 -1854 2232 119 0 0 chr15 33774964 33775258 -51920496 + AluSg SINE Alu 1 294 -16 314 254 87 89 chr15 33775258 33775407 -51920347 + L1M4 LINE L1 4292 4440 -1706 2171 114 3 3 chr15 33775407 33775714 -51920040 + AluSx SINE Alu 1 307 -5 314 254 87 89 chr15 33775714 33775936 -51919818 + L1M4 LINE L1 4440 4664 -1482 411 302 53 18 chr15 33775949 33776174 -51919580 + L1M4b LINE L1 21 253 -6606 1468 172 4 4 chr15 33776193 33776425 -51919329 - MER46A DNA MER2_type -2 234 3 747 270 63 39 chr15 33776696 33776893 -51918861 + L1M4b LINE L1 2273 2481 -4657 1460 219 51 17 chr15 33776893 33777185 -51918569 + AluJo SINE Alu 1 302 0 747 270 63 39 chr15 33777185 33777272 -51918482 + L1M4b LINE L1 2481 2564 -4574 1847 140 57 86 chr15 33777290 33777599 -51918155 + L1MB3 LINE L1 5774 6069 -114 2405 88 0 3 chr15 33777599 33777905 -51917849 + AluSx SINE Alu 1 305 -7 1847 140 57 86 chr15 33777905 33778016 -51917738 + L1MB3 LINE L1 6069 6182 -1 314 242 95 56 chr15 33778083 33778314 -51917440 + L1M4b LINE L1 2586 2825 -4313 189 74 0 0 chr15 33778332 33778359 -51917395 + (TATG)n Simple_repeat Simple_repeat 1 27 0 248 176 0 0 chr15 33778362 33778413 -51917341 + LTR66 LTR ERVL 394 444 -166 238 303 15 0 chr15 33778426 33778492 -51917262 + L1MCa LINE L1 3 69 -6357 933 170 16 62 chr15 33778493 33778687 -51917067 + AluSq SINE Alu 1 185 -128 6604 57 124 59 chr15 33779959 33781054 -51914700 + MER11A LTR ERVK 1 1266 0 1525 279 37 37 chr15 33781054 33781548 -51914206 + MER51C-int LTR ERV1 5842 6334 -1482 2127 122 67 28 chr15 33781548 33781909 -51913845 + THE1C LTR MaLR 1 375 0 1525 279 37 37 chr15 33781909 33782439 -51913315 + MER51C-int LTR ERV1 6334 7816 0 1241 210 168 76 chr15 33782452 33782923 -51912831 + MER51C LTR ERV1 127 640 0 2969 178 28 72 chr15 33782927 33783104 -51912650 + L1MB7 LINE L1 5494 5677 -507 2014 126 0 7 chr15 33783104 33783413 -51912341 + AluSx SINE Alu 1 307 0 2969 178 28 72 chr15 33783413 33783796 -51911958 + L1MB7 LINE L1 5677 6021 -163 2107 125 0 0 chr15 33783796 33784104 -51911650 - AluSg SINE Alu 0 308 1 2969 178 28 72 chr15 33784104 33784250 -51911504 + L1MB7 LINE L1 6021 6172 -12 1897 135 57 3 chr15 33784253 33784535 -51911219 - AluSx SINE Alu -15 297 1 297 0 0 0 chr15 33784543 33784576 -51911178 + (T)n Simple_repeat Simple_repeat 1 33 0 1891 154 14 43 chr15 33784723 33784911 -51910843 + L1MB8 LINE L1 5416 5608 -575 2494 69 0 7 chr15 33784911 33785214 -51910540 + AluY SINE Alu 1 301 -10 1891 154 14 43 chr15 33785214 33785312 -51910442 + L1MB8 LINE L1 5608 5691 -492 3519 85 2 9 chr15 33785312 33785759 -51909995 - MLT2A1 LTR ERVL 0 444 1 1891 154 14 43 chr15 33785759 33785840 -51909914 + L1MB8 LINE L1 5691 5773 -410 2393 83 0 3 chr15 33786422 33786724 -51909030 + AluY SINE Alu 1 301 -10 201 39 0 0 chr15 33786880 33786906 -51908848 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2208 125 0 3 chr15 33786906 33787201 -51908553 - AluSq SINE Alu -15 298 3 1196 148 45 20 chr15 33787298 33787500 -51908254 + AluJb SINE Alu 90 296 -16 256 264 107 25 chr15 33787531 33787690 -51908064 + L2 LINE L2 1569 1740 -1574 265 231 0 0 chr15 33787801 33787853 -51907901 + LTR30 LTR ERV1 1 52 -670 1675 95 182 224 chr15 33787858 33788496 -51907258 + LTR12 LTR ERV1 57 590 -124 373 243 85 31 chr15 33788552 33788693 -51907061 + MLT1H LTR MaLR 61 175 -234 183 80 0 0 chr15 33788818 33788843 -51906911 + (T)n Simple_repeat Simple_repeat 1 25 0 272 156 234 13 chr15 33788902 33788979 -51906775 + MLT1H LTR MaLR 296 389 -1 600 265 124 77 chr15 33789395 33789516 -51906238 + Tigger8 DNA MER2_type 15 129 -537 2249 112 0 3 chr15 33789516 33789821 -51905933 + AluY SINE Alu 1 304 -7 600 265 124 77 chr15 33789821 33790061 -51905693 + Tigger8 DNA MER2_type 129 393 -273 2165 129 0 3 chr15 33790101 33790403 -51905351 + AluSx SINE Alu 1 301 -11 2287 91 0 3 chr15 33790584 33790881 -51904873 - AluSg SINE Alu -14 296 1 1293 194 8 4 chr15 33790896 33791148 -51904606 + L1MB8 LINE L1 5920 6172 -6 2350 74 0 3 chr15 33791380 33791676 -51904078 + AluY SINE Alu 1 295 -16 210 261 45 23 chr15 33792167 33792255 -51903499 + GA-rich Low_complexity Low_complexity 4 93 0 332 132 69 7 chr15 33792340 33792484 -51903270 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 41 203 0 0 chr15 33792520 33792589 -51903165 + AT_rich Low_complexity Low_complexity 1 69 0 269 214 0 0 chr15 33792589 33792645 -51903109 + T-rich Low_complexity Low_complexity 1 56 0 171 0 0 0 chr15 33792645 33792816 -51902938 + AT_rich Low_complexity Low_complexity 1 171 0 413 252 19 0 chr15 33792940 33793043 -51902711 + AluSg/x SINE Alu 192 296 -14 1176 181 186 45 chr15 33793181 33793350 -51902404 - Charlie4a DNA MER1_type -1453 508 364 2183 101 0 0 chr15 33793350 33793638 -51902116 - AluSc SINE Alu -19 290 3 1176 181 186 45 chr15 33793638 33793777 -51901977 - Charlie4a DNA MER1_type -1597 364 246 1728 156 150 9 chr15 33793777 33794097 -51901657 + MLT1A1 LTR MaLR 1 365 0 1176 181 186 45 chr15 33794097 33794191 -51901563 - Charlie4a DNA MER1_type -1715 246 48 1721 170 3 14 chr15 33794513 33794801 -51900953 - AluJo SINE Alu -18 294 10 2486 72 3 0 chr15 33794824 33795131 -51900623 - AluSp SINE Alu -4 309 2 2268 107 0 0 chr15 33795211 33795509 -51900245 - AluSx SINE Alu -8 304 7 1125 189 126 0 chr15 33795551 33795832 -51899922 + MER58 DNA MER1_type 1 2408 -12 239 255 66 85 chr15 33795905 33796011 -51899743 + MER5A DNA MER1_type 71 174 -15 1588 173 13 29 chr15 33796261 33796568 -51899186 + AluJo SINE Alu 3 304 -8 1792 153 0 27 chr15 33796748 33797049 -51898705 + AluSx SINE Alu 1 293 -19 223 204 20 0 chr15 33797059 33797108 -51898646 + MER5B DNA MER1_type 5 54 -124 1286 139 5 28 chr15 33797453 33797669 -51898085 + AluSx SINE Alu 8 218 -94 550 245 126 7 chr15 33797757 33797908 -51897846 - MER5B DNA MER1_type -4 174 6 512 275 140 14 chr15 33797898 33798105 -51897649 + MIR SINE MIR 16 248 -14 * 652 247 68 106 chr15 33798257 33798817 -51896937 + MER34 LTR ERV1 1 527 -15 1940 112 27 27 chr15 33798817 33799111 -51896643 + AluSx SINE Alu 1 294 -18 652 247 68 106 chr15 33799111 33799127 -51896627 + MER34 LTR ERV1 527 542 0 180 0 0 0 chr15 33800097 33800117 -51895637 + (A)n Simple_repeat Simple_repeat 1 20 0 817 61 0 0 chr15 33800127 33800226 -51895528 + AluS SINE Alu 1 99 -214 1688 128 12 0 chr15 33800365 33800622 -51895132 + MER101 LTR ERV1 215 474 0 275 301 172 18 chr15 33800825 33800988 -51894766 - MIR3 SINE MIR -6 202 15 2076 119 4 0 chr15 33801770 33802048 -51893706 + AluSp SINE Alu 1 279 -34 377 269 0 0 chr15 33802218 33802322 -51893432 - AluSc SINE Alu -96 203 100 262 233 12 76 chr15 33802327 33802499 -51893255 + A-rich Low_complexity Low_complexity 2 162 0 228 259 0 0 chr15 33802575 33802633 -51893121 + A-rich Low_complexity Low_complexity 1 58 0 209 266 19 45 chr15 33802678 33802832 -51892922 + A-rich Low_complexity Low_complexity 5 154 0 9528 89 4 1 chr15 33802976 33804379 -51891375 + L1PA6 LINE L1 3514 4920 -1226 6771 64 8 3 chr15 33804482 33805543 -51890211 + L1PA6 LINE L1 5087 6151 -3 696 252 43 39 chr15 33805543 33805801 -51889953 - MER90 LTR ERV1 -316 259 1 259 61 0 0 chr15 33805951 33805984 -51889770 - MER5A DNA MER1_type -123 66 34 180 159 227 0 chr15 33805953 33805997 -51889757 + MER5A DNA MER1_type 136 189 0 * 717 186 86 95 chr15 33806005 33806226 -51889528 - MER20 DNA MER1_type 0 219 1 286 233 253 0 chr15 33806251 33806397 -51889357 + L1ME LINE L1 5674 5856 -306 2190 113 10 7 chr15 33806459 33806768 -51888986 - AluSq SINE Alu -3 310 1 2128 155 14 0 chr15 33806839 33807200 -51888554 - MER47A DNA MER2_type 0 366 1 939 200 5 37 chr15 33807429 33807619 -51888135 + MER5A DNA MER1_type 5 188 -1 2426 72 0 0 chr15 33807872 33808176 -51887578 - AluY SINE Alu -7 304 1 2477 85 47 14 chr15 33808443 33808806 -51886948 - THE1C LTR MaLR 0 375 1 320 232 14 0 chr15 33809265 33809334 -51886420 - L1MC4 LINE L1 -1211 6831 6762 2205 118 0 7 chr15 33809558 33809855 -51885899 - AluSx SINE Alu -17 295 1 1791 194 61 29 chr15 33810232 33810675 -51885079 - LTR2B LTR ERV1 0 490 34 12592 90 5 9 chr15 33810696 33811223 -51884531 - Harlequin LTR ERV1 0 6896 6368 2516 80 0 0 chr15 33811223 33811534 -51884220 - AluY SINE Alu 0 311 1 12592 90 5 9 chr15 33811534 33812947 -51882807 - Harlequin LTR ERV1 -528 6368 4945 * 16624 163 4 11 chr15 33812943 33815814 -51879940 - HERVE LTR ERV1 -1806 6007 3156 565 247 0 14 chr15 33815875 33816021 -51879733 - MER115 DNA AcHobo -80 613 470 236 318 152 0 chr15 33816037 33816188 -51879566 - MER115 DNA AcHobo -389 304 131 752 176 50 60 chr15 33816407 33816589 -51879165 - FRAM SINE Alu -1 175 1 451 233 101 16 chr15 33816595 33816724 -51879030 + MIR SINE MIR 74 213 -49 714 201 0 22 chr15 33816792 33816931 -51878823 - FLAM_C SINE Alu -7 136 1 2371 157 47 0 chr15 33817060 33817467 -51878287 - MSTB LTR MaLR 0 426 1 1688 181 3 23 chr15 33817900 33818199 -51877555 + AluJo SINE Alu 1 293 -19 2520 63 0 3 chr15 33818957 33819260 -51876494 + AluY SINE Alu 1 302 -9 13104 218 27 44 chr15 33819320 33820811 -51874943 - L1PA15 LINE L1 -223 7380 5865 2160 120 48 31 chr15 33820811 33821169 -51874585 + THE1B LTR MaLR 1 364 0 13104 218 27 44 chr15 33821169 33822579 -51873175 - L1PA15 LINE L1 -1738 5865 4433 1084 92 0 0 chr15 33822579 33822721 -51873033 - AluY SINE Alu -6 305 164 13104 218 27 44 chr15 33822721 33822733 -51873021 - L1PA15 LINE L1 -3170 4433 4422 2025 91 0 11 chr15 33822733 33822998 -51872756 - AluSc SINE Alu -47 262 1 13104 218 27 44 chr15 33822998 33825806 -51869948 - L1PA15 LINE L1 -3181 4422 1607 390 268 0 58 chr15 33825868 33826058 -51869696 - L1PA15 LINE L1 -5782 1799 1621 1691 181 16 10 chr15 33826092 33826401 -51869353 + AluJo SINE Alu 1 311 -1 4721 132 3 3 chr15 33826553 33827302 -51868452 + L1PA15 LINE L1 5416 6164 -1 1771 147 9 61 chr15 33827407 33827733 -51868021 - AluSx SINE Alu -3 309 1 691 200 55 18 chr15 33827973 33828138 -51867616 - MER20 DNA MER1_type -20 199 29 695 35 0 0 chr15 33828421 33828506 -51867248 + THE1A LTR MaLR 271 355 0 1032 253 119 23 chr15 33828506 33828894 -51866860 - L1MC4 LINE L1 -404 7638 7214 2471 228 93 28 chr15 33829246 33829414 -51866340 - L1ME1 LINE L1 -5 6956 6800 1983 217 56 24 chr15 33829414 33829953 -51865801 - LTR38 LTR ERV1 0 556 1 2471 228 93 28 chr15 33829953 33830559 -51865195 - L1ME1 LINE L1 -161 6800 6132 1112 239 65 21 chr15 33830570 33831001 -51864753 - L1ME1 LINE L1 -873 6068 5619 398 237 61 15 chr15 33831035 33831166 -51864588 - L1ME1 LINE L1 -4547 2575 2439 1663 88 25 0 chr15 33831221 33831460 -51864294 - L1PB1 LINE L1 -3 6148 5904 354 174 29 0 chr15 33831460 33831529 -51864225 - L1ME1 LINE L1 -4670 2452 2382 460 231 0 0 chr15 33831531 33831639 -51864115 - L1ME1 LINE L1 -5232 1191 1084 1519 257 76 35 chr15 33831958 33832534 -51863220 - L1ME1 LINE L1 -5793 630 31 1764 97 9 0 chr15 33832634 33832861 -51862893 - AluSc SINE Alu -6 303 75 235 245 0 0 chr15 33832959 33833008 -51862746 + MLT1A2 LTR MaLR 326 374 0 27 0 0 0 chr15 33833008 33833035 -51862719 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 33833198 33833219 -51862535 + AT_rich Low_complexity Low_complexity 1 21 0 4065 195 53 11 chr15 33833242 33834331 -51861423 + L1PA13 LINE L1 1 1316 -5471 2501 87 0 0 chr15 33834376 33834687 -51861067 - AluSx SINE Alu -1 311 1 400 282 69 8 chr15 33834801 33834932 -51860822 + L2 LINE L2 3175 3313 0 2438 112 0 0 chr15 33835524 33835836 -51859918 + AluSx SINE Alu 1 312 0 284 226 214 20 chr15 33835838 33835859 -51859895 - L1M4 LINE L1 -2896 3250 3234 1680 164 34 20 chr15 33835859 33836152 -51859602 - AluJo SINE Alu -15 297 1 284 226 214 20 chr15 33836152 33836378 -51859376 - L1M4 LINE L1 -2912 3234 2955 940 145 0 93 chr15 33836856 33837049 -51858705 - AluSg/x SINE Alu -1 311 137 1095 126 0 78 chr15 33837629 33837820 -51857934 - AluSg/x SINE Alu 0 312 137 2123 95 7 0 chr15 33841958 33842231 -51853523 + AluSx SINE Alu 1 275 -37 259 23 45 23 chr15 33842236 33842280 -51853474 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chr15 33842385 33842407 -51853347 + (TG)n Simple_repeat Simple_repeat 2 23 0 253 81 0 0 chr15 33843468 33843505 -51852249 - MER116 DNA Mariner -5 75 39 248 285 67 48 chr15 33843665 33843830 -51851924 - HSMAR1 DNA Mariner -208 1079 912 2114 131 0 0 chr15 33847335 33847626 -51848128 - AluSx SINE Alu -21 291 1 2302 98 0 13 chr15 33847732 33848037 -51847717 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr15 33848605 33848636 -51847118 + AT_rich Low_complexity Low_complexity 1 31 0 535 280 151 14 chr15 33848681 33848960 -51846794 - L1MC4a LINE L1 -1916 5892 5576 711 218 126 20 chr15 33849108 33849457 -51846297 - L1MC5 LINE L1 -60 7901 7516 505 245 158 18 chr15 33849520 33849974 -51845780 + LTR50 LTR ERVL 1 682 -113 21 57 0 0 chr15 33849993 33850028 -51845726 + AT_rich Low_complexity Low_complexity 1 35 0 381 166 107 107 chr15 33850070 33850151 -51845603 - L1MC5 LINE L1 -542 7419 7339 2114 124 56 9 chr15 33850151 33850473 -51845281 - MER1B DNA MER1_type 0 337 1 381 166 107 107 chr15 33850473 33850560 -51845194 - L1MC5 LINE L1 -621 7340 7251 350 139 0 56 chr15 33850592 33850664 -51845090 - MLT1E3 LTR MaLR 0 624 557 1331 176 9 52 chr15 33850664 33850798 -51844956 + L1M4 LINE L1 3603 3741 -2405 1611 179 3 36 chr15 33850798 33851100 -51844654 + AluJo SINE Alu 1 292 -20 1331 176 9 52 chr15 33851100 33851312 -51844442 + L1M4 LINE L1 3741 3934 -2212 25191 129 21 80 chr15 33851332 33851356 -51844398 + L1PA4 LINE L1 1 25 -6445 2177 110 3 19 chr15 33851356 33851666 -51844088 + AluSq SINE Alu 1 305 -8 25191 129 21 80 chr15 33851666 33852682 -51843072 + L1PA4 LINE L1 25 1099 -5371 1998 102 6 51 chr15 33852682 33852995 -51842759 - AluSq SINE Alu -14 299 1 25191 129 21 80 chr15 33852995 33853471 -51842283 + L1PA4 LINE L1 1099 1601 -4869 2318 103 0 16 chr15 33853471 33853782 -51841972 + AluY SINE Alu 5 310 -1 25191 129 21 80 chr15 33853782 33854808 -51840946 + L1PA4 LINE L1 1601 2686 -3784 1461 13 0 0 chr15 33854808 33854964 -51840790 + L1PA4 LINE L1 6309 6464 -6 25191 129 21 80 chr15 33854964 33858947 -51836807 + L1PA4 LINE L1 2686 6464 -6 11026 113 23 15 chr15 33858939 33859964 -51835790 + L1PA10 LINE L1 3607 4622 -1546 * 2018 113 33 4 chr15 33859964 33860262 -51835492 + AluSg SINE Alu 1 306 0 11026 113 23 15 chr15 33860262 33860595 -51835159 + L1PA10 LINE L1 4622 4951 -1217 2018 150 49 25 chr15 33860595 33860961 -51834793 - THE1C LTR MaLR 0 375 1 11026 113 23 15 chr15 33860961 33861673 -51834081 + L1PA10 LINE L1 4951 5698 -470 2250 117 3 0 chr15 33861673 33861972 -51833782 + AluSx SINE Alu 1 300 -12 11026 113 23 15 chr15 33861972 33862298 -51833456 + L1PA10 LINE L1 5698 6020 -148 4041 146 38 98 chr15 33862297 33862594 -51833160 + L1MB7 LINE L1 5064 5377 -807 * 1061 72 0 66 chr15 33862594 33862647 -51833107 - L1PB1 LINE L1 -3 6148 6093 2066 112 52 0 chr15 33862647 33862933 -51832821 - AluSg SINE Alu -9 301 1 1061 72 0 66 chr15 33862933 33863031 -51832723 - L1PB1 LINE L1 -58 6093 6007 4041 146 38 98 chr15 33863031 33863767 -51831987 + L1MB7 LINE L1 5377 6073 -111 345 229 0 0 chr15 33863945 33864028 -51831726 + L1MB3 LINE L1 6099 6181 -2 1084 236 183 22 chr15 33864034 33864395 -51831359 - MLT1E2 LTR MaLR -50 576 158 43 81 0 0 chr15 33864797 33864896 -51830858 + GC_rich Low_complexity Low_complexity 1 99 0 337 280 162 50 chr15 33865096 33865435 -51830319 + L1M2 LINE L1 861 1237 -5612 463 219 57 0 chr15 33865855 33865960 -51829794 + MIR3 SINE MIR 81 191 -17 235 0 0 54 chr15 33865993 33866030 -51829724 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 514 205 55 31 chr15 33866402 33866529 -51829225 + L2 LINE L2 3184 3313 0 2650 41 0 19 chr15 33866626 33866943 -51828811 + AluY SINE Alu 1 311 0 1698 138 3 35 chr15 33867025 33867314 -51828440 + AluJo SINE Alu 1 280 -32 417 209 112 75 chr15 33867570 33867704 -51828050 + MER5B DNA MER1_type 21 159 -19 399 325 45 104 chr15 33867762 33867967 -51827787 - L2 LINE L2 -67 3205 2989 2301 95 7 7 chr15 33867967 33868271 -51827483 + AluSg1 SINE Alu 1 304 -5 1105 153 25 20 chr15 33868279 33868482 -51827272 + L1MB4 LINE L1 5970 6173 -7 399 325 45 104 chr15 33868482 33868787 -51826967 - L2 LINE L2 -290 2982 2718 434 153 0 0 chr15 33868926 33868985 -51826769 - AluS SINE Alu -250 60 2 2078 112 30 3 chr15 33869177 33869481 -51826273 + AluSx SINE Alu 1 312 0 672 269 31 40 chr15 33869590 33869817 -51825937 + MIR SINE MIR 1 225 -37 217 200 31 31 chr15 33869820 33869870 -51825884 + (TAA)n Simple_repeat Simple_repeat 3 56 -11 1781 144 0 25 chr15 33869870 33870183 -51825571 + AluSx SINE Alu 5 310 0 217 200 31 31 chr15 33870183 33870196 -51825558 + (TAA)n Simple_repeat Simple_repeat 55 67 0 291 344 90 0 chr15 33870416 33870538 -51825216 + MIR SINE MIR 20 152 -56 187 315 34 45 chr15 33870662 33870751 -51825003 - L2 LINE L2 -177 3095 3008 1688 159 33 20 chr15 33870973 33871274 -51824480 - AluJo SINE Alu -7 305 1 254 217 163 36 chr15 33871334 33871500 -51824254 - L1M4 LINE L1 -3005 3141 2955 2028 125 14 3 chr15 33872052 33872348 -51823406 - AluSg SINE Alu -11 299 1 7738 188 134 26 chr15 33872348 33873012 -51822742 - L1PA16 LINE L1 -4 6865 6274 1750 174 0 7 chr15 33873012 33873300 -51822454 - AluJb SINE Alu -26 286 1 7738 188 134 26 chr15 33873300 33873465 -51822289 - L1PA16 LINE L1 -595 6274 6128 1543 147 4 0 chr15 33873465 33873703 -51822051 - AluJo SINE Alu -1 311 73 7738 188 134 26 chr15 33873703 33874588 -51821166 - L1PA16 LINE L1 -741 6128 5340 390 21 0 0 chr15 33874588 33874635 -51821119 + (TG)n Simple_repeat Simple_repeat 2 48 0 7738 188 134 26 chr15 33874635 33876050 -51819704 - L1PA16 LINE L1 -1529 5340 3364 3556 147 13 0 chr15 33876085 33876609 -51819145 - L1PA16 LINE L1 -6318 531 1 264 159 23 0 chr15 33876676 33876720 -51819034 - MER5B DNA MER1_type -1 177 133 381 194 82 0 chr15 33876867 33876965 -51818789 - L1MC3 LINE L1 -1 7784 7679 27 73 0 0 chr15 33876974 33877029 -51818725 + AT_rich Low_complexity Low_complexity 1 55 0 2904 162 53 9 chr15 33877139 33877663 -51818091 - L1MB2 LINE L1 -3 6168 5622 1967 136 65 26 chr15 33877675 33878014 -51817740 + THE1B LTR MaLR 1 352 -12 231 175 0 0 chr15 33878051 33878091 -51817663 - L1MB2 LINE L1 -569 5611 5572 3490 165 57 32 chr15 33878270 33879155 -51816599 + L1M2 LINE L1 4573 5434 -878 863 173 0 8 chr15 33879155 33879288 -51816466 + AluJo/FLAM SINE Alu 2 133 -169 2324 100 0 3 chr15 33879288 33879588 -51816166 + AluSg SINE Alu 1 299 -11 3490 165 57 32 chr15 33879588 33879878 -51815876 + L1M2 LINE L1 5433 5772 -540 1398 142 36 24 chr15 33879908 33880161 -51815593 - Tigger2 DNA MER2_type -11 2707 2452 4294 136 24 1 chr15 33880210 33880874 -51814880 - Tigger2 DNA MER2_type -1961 757 79 261 83 0 0 chr15 33880906 33880942 -51814812 + (TG)n Simple_repeat Simple_repeat 1 36 0 596 228 123 0 chr15 33881217 33881379 -51814375 - MIR SINE MIR -2 260 79 827 272 0 11 chr15 33881427 33881618 -51814136 - MER5A DNA MER1_type 0 189 1 291 152 51 38 chr15 33881705 33881784 -51813970 - HAL1b LINE L1 0 1348 1269 1343 238 257 13 chr15 33881814 33882355 -51813399 + LTR50 LTR ERVL 120 792 -3 2917 3 0 0 chr15 33882440 33882749 -51813005 + AluYa5 SINE Alu 1 309 -2 2227 67 46 11 chr15 33882755 33883038 -51812716 + AluSx SINE Alu 1 293 -19 4112 100 101 16 chr15 33883149 33883761 -51811993 + MER4A LTR ERV1 1 664 0 4335 171 47 33 chr15 33883881 33884032 -51811722 - L1MB7 LINE L1 -55 6129 5982 1735 124 0 34 chr15 33884032 33884298 -51811456 - AluSx SINE Alu -12 300 44 4335 171 47 33 chr15 33884298 33885150 -51810604 - L1MB7 LINE L1 -202 5982 5113 24 32 0 0 chr15 33885708 33885739 -51810015 + AT_rich Low_complexity Low_complexity 1 31 0 869 213 0 12 chr15 33885782 33885946 -51809808 - FRAM SINE Alu -14 162 1 1024 199 11 5 chr15 33886762 33886953 -51808801 - MIR SINE MIR -38 224 33 359 336 53 60 chr15 33887409 33887799 -51807955 - L2 LINE L2 -198 3074 2686 477 290 95 68 chr15 33887799 33888020 -51807734 + MIR SINE MIR 2 228 -34 2391 80 7 7 chr15 33888191 33888493 -51807261 + AluSx SINE Alu 1 302 -10 571 306 89 32 chr15 33888679 33889048 -51806706 + L2 LINE L2 2004 2393 -921 1820 158 30 0 chr15 33889772 33890075 -51805679 - AluJo SINE Alu 0 312 1 205 335 130 65 chr15 33890238 33890374 -51805380 + L2 LINE L2 3044 3201 -71 1727 148 26 36 chr15 33890374 33890678 -51805076 - AluJb SINE Alu -11 301 1 205 335 130 65 chr15 33890678 33890756 -51804998 + L2 LINE L2 3201 3272 0 489 218 112 82 chr15 33891175 33891345 -51804409 - MER5A DNA MER1_type -1 188 14 708 216 82 26 chr15 33892494 33892688 -51803066 + L2 LINE L2 2602 2806 -508 1328 291 40 36 chr15 33892838 33893309 -51802445 + L2 LINE L2 2836 3308 -5 22 0 0 0 chr15 33893928 33893950 -51801804 + GC_rich Low_complexity Low_complexity 1 22 0 993 169 62 164 chr15 33894569 33894902 -51800852 - MLT1A1 LTR MaLR -3 362 75 2508 61 0 0 chr15 33894902 33895199 -51800555 + AluY SINE Alu 1 297 -14 993 169 62 164 chr15 33895199 33895268 -51800486 - MLT1A1 LTR MaLR -290 75 1 932 76 8 0 chr15 33895271 33895402 -51800352 + L1PA13 LINE L1 5355 5486 -682 376 100 0 0 chr15 33895400 33895450 -51800304 - L1P4 LINE L1 -608 5555 5506 * 4271 84 4 7 chr15 33895451 33896011 -51799743 + L1PA13 LINE L1 5606 6163 0 1417 76 32 0 chr15 33896265 33896450 -51799304 + AluY SINE Alu 110 300 -11 264 265 0 0 chr15 33896450 33896499 -51799255 - MER58 DNA MER1_type -337 49 1 896 215 15 133 chr15 33897259 33897575 -51798179 - LTR41 LTR ERVL 0 795 497 1109 173 92 28 chr15 33897648 33897897 -51797857 - LTR41 LTR ERVL -508 265 1 280 352 28 59 chr15 33898064 33898099 -51797655 + L2 LINE L2 2449 2484 -830 1973 133 28 0 chr15 33898099 33898385 -51797369 - AluSq SINE Alu -19 294 1 280 352 28 59 chr15 33898385 33898602 -51797152 + L2 LINE L2 2484 2693 -621 2313 201 91 113 chr15 33898618 33898708 -51797046 - L1MD2 LINE L1 -15 6344 6254 1873 163 3 3 chr15 33898708 33899002 -51796752 - AluSx SINE Alu -17 295 2 2313 201 91 113 chr15 33899002 33899602 -51796152 - L1MD2 LINE L1 -105 6254 5671 1406 160 24 101 chr15 33899602 33899939 -51795815 - AluJo SINE Alu -1 311 1 2313 201 91 113 chr15 33899939 33900046 -51795708 - L1MD2 LINE L1 -688 5671 5563 590 336 88 47 chr15 33900046 33900139 -51795615 + L2 LINE L2 2688 2776 -496 2112 98 22 38 chr15 33900139 33900457 -51795297 - AluSp SINE Alu 0 313 1 590 336 88 47 chr15 33900457 33900926 -51794828 + L2 LINE L2 2776 3272 0 1213 145 0 78 chr15 33901213 33901255 -51794499 + AluJo SINE Alu 88 132 -180 1879 143 0 7 chr15 33901255 33901562 -51794192 - AluSx SINE Alu -7 305 1 1213 145 0 78 chr15 33901562 33901761 -51793993 + AluJo SINE Alu 132 310 -2 2394 79 10 0 chr15 33902341 33902646 -51793108 - AluSq SINE Alu -5 308 1 1462 154 44 88 chr15 33902805 33903141 -51792613 - L1MB7 LINE L1 -16 6168 5852 2637 42 0 0 chr15 33903141 33903452 -51792302 - AluY SINE Alu 0 311 1 1462 154 44 88 chr15 33903452 33903523 -51792231 - L1MB7 LINE L1 -332 5852 5779 3826 231 83 38 chr15 33903540 33905018 -51790736 - L1MC4 LINE L1 -5 8037 6493 1157 157 157 43 chr15 33905558 33905743 -51790011 + MER46B DNA MER2_type 1 116 -2615 1911 115 18 11 chr15 33905743 33906042 -51789712 + AluSx SINE Alu 1 301 0 1157 157 157 43 chr15 33906042 33906179 -51789575 + MER46B DNA MER2_type 116 236 0 1560 183 25 7 chr15 33906716 33906990 -51788764 + AluJb SINE Alu 1 279 -33 263 135 0 0 chr15 33906990 33907027 -51788727 + Alu SINE Alu 245 281 -21 1979 125 45 3 chr15 33907076 33907364 -51788390 - AluSq SINE Alu -13 300 1 238 276 94 34 chr15 33907402 33907667 -51788087 - L1M4 LINE L1 -2286 3860 3580 624 147 0 0 chr15 33907720 33907815 -51787939 + AluJ/FLAM SINE Alu 1 95 -217 3740 95 3 2 chr15 33907845 33908413 -51787341 + L1P LINE L1 3464 4032 -2114 1724 98 43 120 chr15 33908432 33908757 -51786997 - AluYb8 SINE Alu -18 300 1 4130 198 50 17 chr15 33908757 33909592 -51786162 - L1MA9 LINE L1 -433 5879 5073 1485 165 4 23 chr15 33909592 33909852 -51785902 - AluJo SINE Alu -9 303 49 4130 198 50 17 chr15 33909852 33910232 -51785522 - L1MA9 LINE L1 -1239 5073 4707 2256 90 3 0 chr15 33910232 33910521 -51785233 - AluY SINE Alu -20 291 2 4130 198 50 17 chr15 33910521 33910802 -51784952 - L1MA9 LINE L1 -1605 4707 4280 2207 130 0 10 chr15 33910994 33911302 -51784452 - AluSx SINE Alu -7 305 1 2239 116 0 0 chr15 33911310 33911613 -51784141 - AluSx SINE Alu -9 303 1 2195 178 44 14 chr15 33911613 33912050 -51783704 - L1MB8 LINE L1 -242 5936 5481 2002 157 0 7 chr15 33912050 33912350 -51783404 - AluSx SINE Alu -14 298 1 2195 178 44 14 chr15 33912350 33912411 -51783343 - L1MB8 LINE L1 -697 5481 5423 665 326 101 38 chr15 33912411 33912648 -51783106 - HAL1 LINE L1 -732 1775 1554 2404 101 0 0 chr15 33912648 33912954 -51782800 - AluSg SINE Alu -4 306 1 665 326 101 38 chr15 33912954 33913222 -51782532 - HAL1 LINE L1 -953 1554 1238 234 192 27 14 chr15 33913242 33913315 -51782439 - L1MEd LINE L1 -5041 1078 1005 285 210 93 86 chr15 33913498 33913660 -51782094 - L1MEd LINE L1 -5935 184 22 24 32 0 0 chr15 33913660 33913691 -51782063 + AT_rich Low_complexity Low_complexity 1 31 0 468 0 0 0 chr15 33915147 33915199 -51780555 + (TA)n Simple_repeat Simple_repeat 2 53 0 184 180 120 40 chr15 33915538 33915588 -51780166 - MIR SINE MIR -112 150 97 198 0 0 0 chr15 33916209 33916231 -51779523 + (T)n Simple_repeat Simple_repeat 1 22 0 256 279 221 12 chr15 33916279 33916451 -51779303 + MIR SINE MIR 43 250 -12 1867 199 72 27 chr15 33917320 33917803 -51777951 + MLT1D LTR MaLR 1 505 0 513 178 15 59 chr15 33923325 33923460 -51772294 - L1PA16 LINE L1 -2 6164 6036 2217 113 0 0 chr15 33923524 33923826 -51771928 + AluSg1 SINE Alu 1 302 -7 1963 93 67 8 chr15 33923828 33924137 -51771617 + AluY SINE Alu 1 325 0 2236 96 3 42 chr15 33924669 33924836 -51770918 - AluSp SINE Alu -12 301 150 2347 75 7 26 chr15 33924836 33925142 -51770612 - AluY SINE Alu -11 300 1 2236 96 3 42 chr15 33925142 33925287 -51770467 - AluSp SINE Alu -163 150 1 712 200 54 29 chr15 33925603 33925737 -51770017 - MER58C DNA MER1_type -2205 215 73 2275 94 7 0 chr15 33925737 33926035 -51769719 + AluSq SINE Alu 1 300 -13 712 200 54 29 chr15 33926035 33926105 -51769649 - MER58C DNA MER1_type -2347 73 6 22 0 0 0 chr15 33927366 33927388 -51768366 + AT_rich Low_complexity Low_complexity 1 22 0 1605 189 0 36 chr15 33927902 33928078 -51767676 - AluJo SINE Alu -13 299 137 2275 91 3 0 chr15 33928078 33928374 -51767380 - AluSx SINE Alu -15 297 1 1605 189 0 36 chr15 33928374 33928504 -51767250 - AluJo SINE Alu -175 137 4 2094 125 24 0 chr15 33928585 33928874 -51766880 + AluSx SINE Alu 1 296 -16 2245 95 0 46 chr15 33928913 33929239 -51766515 + AluY SINE Alu 1 311 0 26 0 0 0 chr15 33929616 33929642 -51766112 + AT_rich Low_complexity Low_complexity 1 26 0 2356 45 6 54 chr15 33929778 33930091 -51765663 - AluY SINE Alu -13 298 1 355 266 175 0 chr15 33930276 33930430 -51765324 - MER5A DNA MER1_type 0 189 9 231 127 111 0 chr15 33931547 33931610 -51764144 - L1ME4a LINE L1 -3 6118 6049 549 0 0 0 chr15 33931827 33931888 -51763866 + (TG)n Simple_repeat Simple_repeat 2 62 0 422 174 245 0 chr15 33932012 33932110 -51763644 - FLAM_A SINE Alu -11 122 1 2139 125 3 16 chr15 33932271 33932436 -51763318 - AluSx SINE Alu -13 299 138 2478 70 0 0 chr15 33932436 33932737 -51763017 - AluY SINE Alu -10 301 1 2139 125 3 16 chr15 33932737 33932874 -51762880 - AluSx SINE Alu -174 138 1 263 242 242 0 chr15 33934196 33934287 -51761467 + MIR SINE MIR 86 198 -64 1252 264 260 16 chr15 33934441 33935381 -51760373 + L2 LINE L2 2121 3312 -1 270 214 43 14 chr15 33935452 33935522 -51760232 + MER103 DNA DNA 90 161 -5 946 94 16 0 chr15 33935710 33935837 -51759917 - AluSc SINE Alu -60 249 121 2252 105 3 3 chr15 33936515 33936819 -51758935 - AluSq SINE Alu -9 304 1 2105 105 17 7 chr15 33937010 33937305 -51758449 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr15 33937526 33937556 -51758198 + (TG)n Simple_repeat Simple_repeat 2 31 0 2158 123 0 0 chr15 33937556 33937841 -51757913 - AluSg SINE Alu -25 285 1 456 228 107 8 chr15 33937889 33938029 -51757725 + MLT1H LTR MaLR 413 549 0 403 114 0 43 chr15 33938483 33938553 -51757201 + AluSp SINE Alu 120 186 -127 333 314 55 68 chr15 33938859 33939079 -51756675 + L2 LINE L2 2444 2660 -654 2106 117 3 0 chr15 33939116 33939398 -51756356 - AluSq SINE Alu -30 283 1 285 235 147 0 chr15 33939993 33940095 -51755659 - L1ME LINE L1 -473 5648 5532 230 271 17 0 chr15 33940299 33940358 -51755396 + L3 LINE CR1 904 963 -614 295 338 51 0 chr15 33940485 33940594 -51755160 - MIR3 SINE MIR -43 165 51 324 0 0 0 chr15 33941407 33941443 -51754311 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1191 203 30 38 chr15 33941448 33941685 -51754069 - AluJo SINE Alu -37 275 41 1471 147 18 139 chr15 33942474 33942869 -51752885 - MER7A DNA MER2_type 0 346 2 1629 68 5 40 chr15 33943179 33943401 -51752353 + AluSx SINE Alu 1 214 -98 2871 3 0 0 chr15 33944344 33944653 -51751101 + AluYb8 SINE Alu 1 309 -9 1951 121 71 3 chr15 33944784 33945066 -51750688 + AluSx SINE Alu 1 301 -11 1361 203 68 18 chr15 33945260 33945541 -51750213 + AluJo SINE Alu 5 299 -13 21 36 0 0 chr15 33945611 33945639 -51750115 + AT_rich Low_complexity Low_complexity 1 28 0 1787 172 34 0 chr15 33945878 33946169 -51749585 - AluJo SINE Alu -11 301 1 1466 183 95 4 chr15 33946310 33946584 -51749170 - AluJb SINE Alu -13 299 1 2616 24 3 0 chr15 33947599 33947896 -51747858 + AluY SINE Alu 1 298 -13 2003 140 0 22 chr15 33948443 33948757 -51746997 - AluSc SINE Alu -2 307 1 2484 63 0 0 chr15 33948768 33949067 -51746687 - AluY SINE Alu -12 299 1 1894 129 54 0 chr15 33949457 33949736 -51746018 + AluSq SINE Alu 1 294 -19 181 262 0 0 chr15 33949786 33949828 -51745926 - L2 LINE L2 -10 3303 3262 430 333 31 5 chr15 33949923 33950115 -51745639 + MIR SINE MIR 66 262 0 2209 99 26 0 chr15 33951262 33951564 -51744190 + AluSg SINE Alu 1 310 0 656 254 39 47 chr15 33951673 33951905 -51743849 + MIR SINE MIR 1 230 -32 1822 140 0 25 chr15 33951952 33952277 -51743477 + AluSx SINE Alu 5 322 0 197 333 83 47 chr15 33952748 33952940 -51742814 - L2 LINE L2 -338 2976 2778 1818 177 0 7 chr15 33953016 33953321 -51742433 + AluJo SINE Alu 1 303 -9 2313 90 0 3 chr15 33955797 33956097 -51739657 - AluSq SINE Alu -14 299 1 753 249 160 50 chr15 33958272 33958734 -51737020 - L1MC4 LINE L1 -94 7948 7436 2269 78 0 3 chr15 33958846 33959128 -51736626 - AluY SINE Alu -17 294 14 21 36 0 0 chr15 33960169 33960197 -51735557 + AT_rich Low_complexity Low_complexity 1 28 0 365 232 30 60 chr15 33960209 33960377 -51735377 - L1ME4a LINE L1 -34 6087 5925 274 167 0 0 chr15 33960456 33960498 -51735256 - 5S rRNA rRNA -79 42 1 250 248 53 68 chr15 33960499 33960632 -51735122 - L1ME4a LINE L1 -319 5802 5672 1937 126 3 17 chr15 33960653 33960947 -51734807 - AluSg SINE Alu -16 294 5 226 344 70 39 chr15 33961719 33961978 -51733776 + L2 LINE L2 2965 3231 -82 1927 112 43 0 chr15 33961979 33962257 -51733497 + AluSx SINE Alu 1 290 -22 279 0 0 0 chr15 33962263 33962294 -51733460 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 320 225 71 47 chr15 33962314 33962483 -51733271 - Charlie7 DNA MER1_type 0 2612 2440 256 289 70 51 chr15 33965240 33965396 -51730358 + L2 LINE L2 2245 2403 -911 329 292 247 6 chr15 33965470 33965648 -51730106 - MIR SINE MIR -10 252 32 1601 219 48 24 chr15 33965649 33965865 -51729889 - L1ME1 LINE L1 -68 6098 5889 2307 96 0 19 chr15 33965865 33966177 -51729577 - AluSq SINE Alu -7 306 1 1601 219 48 24 chr15 33966177 33966446 -51729308 - L1ME1 LINE L1 -277 5889 5676 2239 103 7 3 chr15 33966478 33966778 -51728976 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 33966791 33966813 -51728941 + AT_rich Low_complexity Low_complexity 1 22 0 1580 188 10 20 chr15 33966917 33967220 -51728534 - AluJb SINE Alu -11 301 2 2328 78 3 10 chr15 33967311 33967618 -51728136 + AluY SINE Alu 1 305 -6 354 230 92 0 chr15 33967662 33967749 -51728005 - MER5A DNA MER1_type -91 98 4 1997 132 0 30 chr15 33967878 33968174 -51727580 - AluSx SINE Alu -10 302 16 1286 173 0 26 chr15 33968213 33968383 -51727371 + MER58B DNA MER1_type 117 281 -2139 1219 234 34 52 chr15 33968383 33968764 -51726990 - MLT1A2 LTR MaLR 0 374 1 1286 173 0 26 chr15 33968764 33968824 -51726930 + MER58B DNA MER1_type 281 341 0 316 228 218 10 chr15 33968852 33968953 -51726801 + MER5A DNA MER1_type 61 182 -7 330 269 60 45 chr15 33969088 33969222 -51726532 - MIR SINE MIR 0 262 127 1727 154 13 13 chr15 33970137 33970435 -51725319 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 33970445 33970474 -51725280 + AT_rich Low_complexity Low_complexity 1 29 0 311 354 27 14 chr15 33971978 33972125 -51723629 - L3 LINE CR1 -15 1562 1414 232 283 0 0 chr15 33972448 33972508 -51723246 + (TA)n Simple_repeat Simple_repeat 1 60 0 2176 86 7 4 chr15 33972952 33973231 -51722523 + AluSp SINE Alu 1 280 -33 408 20 0 0 chr15 33973231 33973280 -51722474 + (CA)n Simple_repeat Simple_repeat 1 49 0 2177 109 0 19 chr15 33973815 33974126 -51721628 - AluSx SINE Alu -7 305 1 22 0 0 0 chr15 33975129 33975151 -51720603 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr15 33975585 33975632 -51720122 + AT_rich Low_complexity Low_complexity 1 47 0 464 288 38 38 chr15 33976545 33976705 -51719049 + MIR SINE MIR 14 173 -89 25 31 0 0 chr15 33977629 33977661 -51718093 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr15 33979708 33979743 -51716011 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr15 33980454 33980486 -51715268 + AT_rich Low_complexity Low_complexity 1 32 0 1470 179 32 54 chr15 33980558 33980871 -51714883 - AluJo SINE Alu -6 306 1 288 308 64 32 chr15 33981199 33981355 -51714399 - MIR3 SINE MIR 0 208 48 27 29 0 0 chr15 33982974 33983008 -51712746 + AT_rich Low_complexity Low_complexity 1 34 0 2491 147 7 9 chr15 33983049 33983497 -51712257 - L1MB8 LINE L1 0 6178 5732 30 27 0 0 chr15 33983531 33983568 -51712186 + AT_rich Low_complexity Low_complexity 1 37 0 731 250 93 31 chr15 33983569 33983957 -51711797 + HAL1b LINE L1 902 1313 -35 371 215 0 0 chr15 33984185 33984250 -51711504 - MER2 DNA MER2_type -1 344 280 909 130 19 0 chr15 33984281 33984435 -51711319 - MER2 DNA MER2_type -139 206 50 2025 125 7 0 chr15 33984870 33985188 -51710566 - AluSq SINE Alu 0 320 1 21 0 0 0 chr15 33987460 33987481 -51708273 + AT_rich Low_complexity Low_complexity 1 21 0 1144 194 182 11 chr15 33987796 33988147 -51707607 + Charlie1b DNA MER1_type 112 522 -1 349 392 69 27 chr15 33989031 33989363 -51706391 + L2 LINE L2 2830 3175 -97 188 299 105 62 chr15 33990250 33990574 -51705180 + L2 LINE L2 1542 1879 -1435 336 281 188 60 chr15 33990578 33990886 -51704868 + L2 LINE L2 2020 2287 -1027 2290 98 0 0 chr15 33990886 33991183 -51704571 + AluSc SINE Alu 8 304 -5 336 281 188 60 chr15 33991183 33991469 -51704285 + L2 LINE L2 2287 2690 -624 1159 44 25 13 chr15 33991812 33991971 -51703783 + L1PA6 LINE L1 5993 6153 -1 2357 78 0 3 chr15 33991971 33992267 -51703487 + AluY SINE Alu 1 295 -16 432 265 119 54 chr15 33992606 33992791 -51702963 - L2 LINE L2 0 3313 3117 1140 149 58 10 chr15 33992834 33993042 -51702712 + MER46A DNA MER2_type 17 234 -2 579 284 142 0 chr15 33993116 33993292 -51702462 - MIR SINE MIR -34 228 28 2136 92 46 3 chr15 33993351 33993634 -51702120 + AluSq SINE Alu 1 295 -18 2360 87 0 3 chr15 33993719 33994018 -51701736 + AluSc SINE Alu 1 298 -11 1154 182 4 30 chr15 33994151 33994382 -51701372 + AluJb SINE Alu 83 307 -5 23 54 0 0 chr15 33994437 33994474 -51701280 + AT_rich Low_complexity Low_complexity 1 37 0 2025 118 3 32 chr15 33995155 33995469 -51700285 - AluSx SINE Alu -7 305 1 2102 124 3 0 chr15 33995495 33995793 -51699961 + AluSp SINE Alu 1 299 -14 459 275 74 48 chr15 33995894 33996123 -51699631 + MIR SINE MIR 4 238 -24 26 30 0 0 chr15 33996837 33996870 -51698884 + AT_rich Low_complexity Low_complexity 1 33 0 1731 163 32 3 chr15 33998017 33998300 -51697454 + AluJb SINE Alu 1 291 -21 1472 196 50 7 chr15 33998313 33998593 -51697161 + AluJb SINE Alu 1 292 -20 393 300 55 9 chr15 33999590 33999700 -51696054 + L2 LINE L2 3153 3267 -5 1861 112 77 0 chr15 33999823 34000110 -51695644 - AluSx SINE Alu -3 309 1 281 294 154 7 chr15 34000111 34000254 -51695500 + MIR SINE MIR 96 259 -3 1823 164 0 0 chr15 34000630 34000911 -51694843 - AluJb SINE Alu -31 281 1 227 182 0 0 chr15 34001239 34001283 -51694471 + HY1 scRNA scRNA 67 110 -2 207 0 0 0 chr15 34001285 34001308 -51694446 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3370 206 40 59 chr15 34002254 34002820 -51692934 + L1ME1 LINE L1 4633 5208 -958 1581 189 17 0 chr15 34002820 34003116 -51692638 + AluJb SINE Alu 1 301 -11 3370 206 40 59 chr15 34003116 34003575 -51692179 + L1ME1 LINE L1 5208 5674 -492 2177 94 4 0 chr15 34003575 34003855 -51691899 + AluSg SINE Alu 1 281 -29 226 0 0 0 chr15 34003855 34003880 -51691874 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3370 206 40 59 chr15 34003880 34004412 -51691342 + L1ME1 LINE L1 5674 6151 -15 180 152 0 0 chr15 34005108 34005141 -51690613 + (CA)n Simple_repeat Simple_repeat 2 34 0 264 316 140 15 chr15 34007132 34007268 -51688486 - MIR SINE MIR -57 205 53 1746 121 81 11 chr15 34007585 34007858 -51687896 - AluSx SINE Alu -20 292 1 2101 93 26 58 chr15 34007969 34008281 -51687473 - AluSg SINE Alu -8 302 1 1301 188 26 79 chr15 34008592 34008896 -51686858 + AluJo SINE Alu 1 288 -24 372 236 250 34 chr15 34009017 34009165 -51686589 + MER5A DNA MER1_type 9 188 -1 235 329 12 0 chr15 34009165 34009248 -51686506 - L2 LINE L2 -523 2791 2708 22 0 0 0 chr15 34009453 34009475 -51686279 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr15 34010270 34010299 -51685455 + (A)n Simple_repeat Simple_repeat 1 29 0 2250 95 0 3 chr15 34010448 34010742 -51685012 + AluSg SINE Alu 1 293 -17 2253 119 0 3 chr15 34010984 34011295 -51684459 + AluSx SINE Alu 1 310 -2 203 60 80 0 chr15 34011458 34011508 -51684246 + (TA)n Simple_repeat Simple_repeat 1 54 0 2044 209 86 39 chr15 34011549 34012133 -51683621 + L1ME1 LINE L1 5550 6160 -6 2172 115 0 47 chr15 34013020 34013342 -51682412 - AluSq SINE Alu -6 307 1 518 313 86 58 chr15 34013553 34013985 -51681769 + MLT1H LTR MaLR 106 549 0 660 306 122 14 chr15 34015320 34016107 -51679647 - L1ME3A LINE L1 -222 5948 5073 204 143 0 0 chr15 34016306 34016348 -51679406 + (TC)n Simple_repeat Simple_repeat 1 42 0 1541 179 0 21 chr15 34016359 34016644 -51679110 - AluJo SINE Alu -32 280 2 931 144 72 0 chr15 34018208 34018388 -51677366 + AluSg/x SINE Alu 135 325 0 234 194 42 42 chr15 34018915 34018987 -51676767 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 764 73 3 22 chr15 34019918 34020033 -51675721 + LTR7 LTR ERV1 253 448 -2 1531 83 0 5 chr15 34020036 34020241 -51675513 + HERVH LTR ERV1 2 205 -7508 * 2391 88 0 3 chr15 34020231 34020560 -51675194 + HERVH LTR ERV1 915 1242 -6471 1081 89 11 28 chr15 34020560 34020739 -51675015 + LTR7 LTR ERV1 239 414 -36 2137 127 0 7 chr15 34020859 34021159 -51674595 - AluSx SINE Alu -14 298 1 1971 120 11 11 chr15 34021891 34022204 -51673550 + AluSq SINE Alu 1 313 0 1700 104 104 19 chr15 34022211 34022471 -51673283 + AluSx SINE Alu 1 282 -30 236 75 0 25 chr15 34022474 34022514 -51673240 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1231 117 168 0 chr15 34022818 34023015 -51672739 + MER30 DNA MER1_type 1 230 0 531 377 77 2 chr15 34023015 34023469 -51672285 + L2 LINE L2 2246 2733 -581 2547 120 19 16 chr15 34023746 34024120 -51671634 - THE1C LTR MaLR 0 375 1 527 196 206 22 chr15 34024148 34024332 -51671422 + L1MC4 LINE L1 7825 8042 0 186 222 22 0 chr15 34024479 34024524 -51671230 + L2 LINE L2 3268 3313 0 187 344 54 0 chr15 34024561 34024654 -51671100 - L2 LINE L2 -2 3311 3214 377 279 61 0 chr15 34025304 34025451 -51670303 + L1MEd LINE L1 938 1093 -5279 1532 219 25 12 chr15 34025467 34025855 -51669899 + L1MEd LINE L1 1185 1535 -4849 2396 97 0 3 chr15 34025856 34026166 -51669588 - AluSg SINE Alu -1 309 1 1102 223 41 20 chr15 34026167 34026512 -51669242 - L1M4 LINE L1 -3372 2774 2423 * 1486 226 51 16 chr15 34026509 34026584 -51669170 + L1MEd LINE L1 1521 1592 -4792 1771 179 3 25 chr15 34026584 34026903 -51668851 + AluSx SINE Alu 1 312 0 1486 226 51 16 chr15 34026903 34027513 -51668241 + L1MEd LINE L1 1592 2325 -4059 1171 172 14 14 chr15 34027513 34027722 -51668032 + AluJb SINE Alu 87 295 -17 855 179 26 47 chr15 34027730 34027902 -51667852 + L1MEd LINE L1 2320 2475 -3907 1907 135 0 40 chr15 34027902 34028061 -51667693 - AluSx SINE Alu -27 285 142 2088 126 7 0 chr15 34028061 34028355 -51667399 - AluSc SINE Alu -13 296 1 1907 135 0 40 chr15 34028355 34028492 -51667262 - AluSx SINE Alu -170 142 1 855 179 26 47 chr15 34028492 34028640 -51667114 + L1MEd LINE L1 2475 2625 -3757 771 97 8 81 chr15 34028649 34028773 -51666981 + AluSp/q SINE Alu 185 299 -14 567 206 67 6 chr15 34028774 34028954 -51666800 + L1MEd LINE L1 3001 3191 -3191 837 146 0 22 chr15 34028954 34029091 -51666663 + AluSp/q SINE Alu 175 308 -5 4294 233 55 44 chr15 34029095 34029628 -51666126 + L1MEd LINE L1 3191 3716 -2666 2144 124 0 0 chr15 34029628 34029926 -51665828 + AluSx SINE Alu 1 298 -14 4294 233 55 44 chr15 34029926 34029981 -51665773 + L1MEd LINE L1 3716 3769 -2613 1953 147 13 3 chr15 34029981 34030280 -51665474 - AluSx SINE Alu -10 302 1 4294 233 55 44 chr15 34030280 34031186 -51664568 + L1MEd LINE L1 3769 4703 -1679 1871 168 88 8 chr15 34031225 34031600 -51664154 + L1MB7 LINE L1 5731 6135 -49 491 188 146 0 chr15 34031602 34031698 -51664056 + FLAM_A SINE Alu 2 111 -31 255 31 0 0 chr15 34031703 34031735 -51664019 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2005 131 3 0 chr15 34032226 34032517 -51663237 - AluSq SINE Alu -21 292 1 2224 92 0 7 chr15 34032634 34032926 -51662828 + AluY SINE Alu 1 290 -21 258 313 0 12 chr15 34032951 34033034 -51662720 + MIR SINE MIR 64 145 -63 2317 112 0 0 chr15 34033479 34033784 -51661970 - AluSg SINE Alu -5 305 1 1965 160 47 21 chr15 34033961 34034299 -51661455 - MER7A DNA MER2_type 0 346 2 2150 124 13 0 chr15 34034302 34034600 -51661154 - AluSx SINE Alu -10 302 1 2375 87 3 0 chr15 34034609 34034909 -51660845 - AluSp SINE Alu -12 301 1 1252 112 6 6 chr15 34035045 34035215 -51660539 + AluSc SINE Alu 1 170 -139 1137 75 0 0 chr15 34035319 34035453 -51660301 + AluSc SINE Alu 152 285 -24 2238 113 3 13 chr15 34035464 34035775 -51659979 + AluSp SINE Alu 1 308 -5 1624 203 0 0 chr15 34035786 34036062 -51659692 + AluJo SINE Alu 3 278 -34 291 71 0 0 chr15 34036065 34036107 -51659647 + (CAA)n Simple_repeat Simple_repeat 1 42 0 882 203 130 5 chr15 34036238 34036430 -51659324 + MER20 DNA MER1_type 1 216 -3 25 51 0 0 chr15 34036822 34036861 -51658893 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr15 34037625 34037648 -51658106 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr15 34037957 34037982 -51657772 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr15 34038643 34038671 -51657083 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr15 34040218 34040245 -51655509 + (TC)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr15 34040244 34040268 -51655486 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 275 0 29 0 chr15 34040267 34040302 -51655452 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr15 34040313 34040335 -51655419 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr15 34040403 34040434 -51655320 + AT_rich Low_complexity Low_complexity 1 31 0 326 218 29 23 chr15 34041016 34041190 -51654564 + GA-rich Low_complexity Low_complexity 3 177 0 709 169 39 15 chr15 34041507 34041637 -51654117 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 34044686 34044707 -51651047 + GC_rich Low_complexity Low_complexity 1 21 0 1278 125 59 70 chr15 34046499 34046755 -51648999 + AluJo SINE Alu 6 258 -54 2171 107 20 0 chr15 34047476 34047774 -51647980 + AluSx SINE Alu 2 305 -7 336 262 97 0 chr15 34047875 34047978 -51647776 - MARNA DNA Mariner -206 380 268 225 86 0 0 chr15 34048430 34048465 -51647289 - L2 LINE L2 -5 3308 3274 2259 79 41 0 chr15 34048588 34048879 -51646875 + AluYa5 SINE Alu 1 303 -8 395 80 65 62 chr15 34049118 34049207 -51646547 + L1M3 LINE L1 5516 5607 -561 1972 146 0 10 chr15 34049207 34049509 -51646245 + AluSx SINE Alu 1 299 -13 744 233 0 0 chr15 34049517 34049650 -51646104 + FLAM_A SINE Alu 1 133 0 262 77 58 0 chr15 34049655 34049707 -51646047 + L1MB4 LINE L1 6125 6179 -1 1013 98 15 0 chr15 34049744 34049877 -51645877 + AluSq/x SINE Alu 1 135 -177 2336 72 7 3 chr15 34049877 34050183 -51645571 + AluY SINE Alu 2 308 -3 1287 171 14 110 chr15 34050193 34050539 -51645215 + AluSq SINE Alu 1 313 0 239 279 35 58 chr15 34050564 34050650 -51645104 + L3 LINE CR1 436 519 -1058 293 276 141 54 chr15 34051433 34051618 -51644136 + L3 LINE CR1 538 738 -839 2302 110 0 0 chr15 34051618 34051918 -51643836 + AluSx SINE Alu 1 300 -12 2215 127 0 3 chr15 34052324 34052631 -51643123 + AluSx SINE Alu 1 306 -6 1715 187 112 64 chr15 34052752 34053190 -51642564 - LTR40b LTR ERVL -3 459 1 200 370 80 6 chr15 34053193 34053355 -51642399 - L2 LINE L2 -228 3044 2871 2303 92 10 0 chr15 34053407 34053701 -51642053 - AluY SINE Alu -14 297 1 585 289 53 22 chr15 34053876 34054104 -51641650 - MIR SINE MIR -27 235 1 634 306 80 52 chr15 34054375 34054738 -51641016 + L3 LINE CR1 798 1170 -407 2327 153 9 68 chr15 34054745 34055099 -51640655 + MER47B DNA MER2_type 6 331 -1992 2017 135 20 3 chr15 34055099 34055395 -51640359 - AluSx SINE Alu -11 301 1 2327 153 9 68 chr15 34055395 34055479 -51640275 + MER47B DNA MER2_type 331 418 0 330 247 68 92 chr15 34055511 34055560 -51640194 - MIR SINE MIR -65 143 94 703 116 0 0 chr15 34055560 34055893 -51639861 + AluSx SINE Alu 1 333 0 330 247 68 92 chr15 34055893 34055970 -51639784 - MIR SINE MIR -114 94 16 2175 101 3 3 chr15 34056414 34056720 -51639034 + AluSq SINE Alu 1 306 -7 196 206 0 0 chr15 34057017 34057051 -51638703 + L2 LINE L2 3210 3243 -29 2280 78 0 13 chr15 34058264 34058571 -51637183 - AluY SINE Alu -8 303 1 1910 108 42 3 chr15 34058572 34058859 -51636895 - AluSx SINE Alu -14 298 1 428 106 12 0 chr15 34059518 34059603 -51636151 + (TA)n Simple_repeat Simple_repeat 2 87 0 1985 98 7 7 chr15 34059603 34059890 -51635864 - AluSq SINE Alu -26 287 1 2099 96 0 37 chr15 34059925 34060247 -51635507 + AluY SINE Alu 1 310 -1 1135 127 0 6 chr15 34060254 34060435 -51635319 + AluSg/x SINE Alu 118 297 -13 2096 78 3 7 chr15 34060435 34060728 -51635026 + AluY SINE Alu 1 292 -19 2573 101 2 55 chr15 34060746 34061144 -51634610 + MER48 LTR ERV1 8 384 -3 2007 97 0 53 chr15 34061210 34061529 -51634225 - AluSc SINE Alu -7 302 1 1546 256 81 16 chr15 34061787 34062294 -51633460 - HAL1 LINE L1 -607 1900 1361 1456 177 27 24 chr15 34062322 34062616 -51633138 - AluJo SINE Alu -17 295 1 23 0 0 0 chr15 34062861 34062884 -51632870 + AT_rich Low_complexity Low_complexity 1 23 0 2255 78 3 19 chr15 34062987 34063295 -51632459 + AluY SINE Alu 3 305 -6 2058 116 3 16 chr15 34063306 34063616 -51632138 - AluSq SINE Alu -7 306 1 216 0 0 0 chr15 34063805 34063829 -51631925 + (CA)n Simple_repeat Simple_repeat 1 24 0 2029 127 0 13 chr15 34064309 34064625 -51631129 + AluSx SINE Alu 1 312 0 1094 116 83 6 chr15 34064764 34064945 -51630809 - AluSg/x SINE Alu -6 304 110 1984 132 0 3 chr15 34065014 34065310 -51630444 + AluSx SINE Alu 1 295 -17 2020 102 7 10 chr15 34065315 34065608 -51630146 + AluSc SINE Alu 3 294 -15 810 248 5 59 chr15 34065624 34065734 -51630020 + MIR SINE MIR 42 136 -126 2106 115 0 0 chr15 34065734 34066030 -51629724 + AluSc SINE Alu 1 296 -13 810 248 5 59 chr15 34066030 34066141 -51629613 + MIR SINE MIR 136 251 -11 287 213 184 64 chr15 34066613 34066754 -51629000 - MLT1J1 LTR MaLR 0 446 289 * 655 242 31 0 chr15 34066752 34066913 -51628841 - MLT1J2 LTR MaLR -247 203 38 1924 151 3 0 chr15 34066915 34067220 -51628534 + AluSq SINE Alu 1 306 -7 1062 153 11 0 chr15 34067220 34067397 -51628357 + AluSg/x SINE Alu 134 312 0 364 227 0 0 chr15 34067683 34067749 -51628005 - Tigger7 DNA MER2_type -492 213 148 687 123 0 0 chr15 34067749 34067855 -51627899 - AluSx SINE Alu -15 297 192 * 776 103 0 0 chr15 34067852 34067959 -51627795 - AluSx SINE Alu -206 107 1 402 147 53 27 chr15 34067959 34068025 -51627729 - Tigger7 DNA MER2_type -2331 156 86 1900 118 14 0 chr15 34068025 34068322 -51627432 - AluSx SINE Alu -11 301 1 1017 201 78 78 chr15 34068324 34068643 -51627111 - MLT1D LTR MaLR -186 319 1 1667 233 95 7 chr15 34068643 34069063 -51626691 - MLT1F LTR MaLR -85 457 1 242 213 49 16 chr15 34069447 34069508 -51626246 + MER41A LTR ERV1 400 462 -92 2199 110 0 0 chr15 34069642 34069942 -51625812 - AluSx SINE Alu -12 300 1 930 132 15 56 chr15 34069942 34070139 -51625615 - AluSp SINE Alu -11 302 114 1900 156 0 0 chr15 34070165 34070466 -51625288 - AluSx SINE Alu -9 303 3 2093 110 0 3 chr15 34071330 34071630 -51624124 + AluSx SINE Alu 1 299 -13 810 184 7 26 chr15 34071698 34071850 -51623904 - FAM SINE Alu -36 149 1 1126 93 0 13 chr15 34072109 34072260 -51623494 + AluSq/x SINE Alu 1 149 -163 391 83 0 0 chr15 34072260 34072308 -51623446 + AluY SINE Alu 202 249 -52 1112 156 18 36 chr15 34072308 34072532 -51623222 + AluSq SINE Alu 85 304 -9 221 309 9 142 chr15 34073484 34073814 -51621940 - L2 LINE L2 -70 3202 2917 2392 67 0 6 chr15 34073821 34074133 -51621621 + AluY SINE Alu 1 310 -1 1236 171 146 25 chr15 34074215 34074281 -51621473 + AluJb SINE Alu 1 58 -254 2208 103 3 0 chr15 34074281 34074583 -51621171 + AluSp SINE Alu 1 303 -10 1236 171 146 25 chr15 34074583 34074791 -51620963 + AluJb SINE Alu 58 308 -4 2311 88 0 3 chr15 34074912 34075220 -51620534 + AluY SINE Alu 1 307 -4 1466 204 6 29 chr15 34075587 34075901 -51619853 + AluJo SINE Alu 6 312 0 190 309 104 55 chr15 34076019 34076239 -51619515 + L2 LINE L2 2926 3156 -116 1964 117 3 0 chr15 34076800 34077082 -51618672 + AluSx SINE Alu 23 305 -7 913 248 4 32 chr15 34077178 34077456 -51618298 - L1MD3 LINE L1 -12 7983 7714 357 323 86 45 chr15 34077581 34077801 -51617953 - L1M4 LINE L1 -1312 4834 4606 1865 179 3 0 chr15 34077803 34078110 -51617644 + AluSx SINE Alu 1 308 -4 443 270 237 50 chr15 34078647 34079010 -51616744 + L2 LINE L2 2840 3270 -2 1898 128 0 4 chr15 34079143 34079424 -51616330 - AluSg SINE Alu -30 280 1 2051 127 0 10 chr15 34079426 34079733 -51616021 - AluSx SINE Alu -8 304 1 552 257 44 7 chr15 34079733 34079869 -51615885 - MIR SINE MIR -37 225 85 299 337 10 0 chr15 34079948 34080049 -51615705 + MIR3 SINE MIR 92 193 -15 811 183 0 0 chr15 34080147 34080284 -51615470 + FRAM SINE Alu 1 136 -40 432 130 0 0 chr15 34080290 34080359 -51615395 + (GA)n Simple_repeat Simple_repeat 1 69 0 342 70 21 4 chr15 34081120 34081179 -51614575 - Alu SINE Alu -256 46 1 557 219 41 41 chr15 34081181 34081197 -51614557 - MIR SINE MIR -98 164 149 2650 164 20 4 chr15 34081197 34081472 -51614282 - MLT1C LTR MaLR 0 467 181 2379 52 10 16 chr15 34081472 34081777 -51613977 - AluY SINE Alu -8 303 1 2650 164 20 4 chr15 34081777 34081958 -51613796 - MLT1C LTR MaLR -286 181 4 557 219 41 41 chr15 34081958 34082087 -51613667 - MIR SINE MIR -112 150 19 237 297 135 8 chr15 34082421 34082578 -51613176 - MIR SINE MIR -62 146 16 194 347 14 0 chr15 34083337 34083409 -51612345 - L2 LINE L2 -1537 1777 1705 481 297 88 17 chr15 34083676 34083915 -51611839 + MIR SINE MIR 5 260 -2 468 0 0 0 chr15 34084254 34084306 -51611448 + (CA)n Simple_repeat Simple_repeat 2 53 0 2096 117 10 3 chr15 34085607 34085916 -51609838 + AluSx SINE Alu 1 311 -1 567 230 96 28 chr15 34086399 34086577 -51609177 - MIR SINE MIR 0 262 73 830 143 0 48 chr15 34086594 34086741 -51609013 + AluJb SINE Alu 11 150 -162 2041 103 0 0 chr15 34087300 34087581 -51608173 + AluSx SINE Alu 1 281 -31 1493 135 17 76 chr15 34087954 34088077 -51607677 + AluJb SINE Alu 7 136 -176 2020 100 25 0 chr15 34088077 34088357 -51607397 + AluSg SINE Alu 1 287 -23 1493 135 17 76 chr15 34088357 34088522 -51607232 + AluJb SINE Alu 136 278 -34 1187 162 0 5 chr15 34088636 34088858 -51606896 + AluJb SINE Alu 86 306 0 2142 107 125 41 chr15 34089972 34090364 -51605390 + MSTA LTR MaLR 3 427 -1 378 292 0 54 chr15 34090496 34090516 -51605238 - L2 LINE L2 -8 3305 3285 1362 218 78 48 chr15 34090516 34090556 -51605198 - MLT2D LTR ERVL 0 414 377 267 103 0 0 chr15 34090556 34090595 -51605159 + (CA)n Simple_repeat Simple_repeat 1 39 0 1362 218 78 48 chr15 34090595 34090866 -51604888 - MLT2D LTR ERVL -37 377 86 2387 71 0 0 chr15 34090866 34091177 -51604577 + AluY SINE Alu 1 311 0 1362 218 78 48 chr15 34091177 34091264 -51604490 - MLT2D LTR ERVL -328 86 3 378 292 0 54 chr15 34091264 34091373 -51604381 - L2 LINE L2 -28 3285 3183 190 231 55 121 chr15 34091588 34091679 -51604075 - MIR SINE MIR -55 153 69 1713 186 23 32 chr15 34091810 34092154 -51603600 - MLT1A1 LTR MaLR -24 341 1 237 211 40 79 chr15 34093190 34093266 -51602488 - MIR SINE MIR -3 259 187 453 273 0 0 chr15 34093272 34093371 -51602383 + L2 LINE L2 3202 3300 -13 1690 159 44 14 chr15 34093397 34093693 -51602061 - AluJo SINE Alu -7 305 1 2239 139 31 19 chr15 34093737 34094097 -51601657 + THE1B LTR MaLR 1 364 0 2276 68 3 0 chr15 34094097 34094389 -51601365 + THE1B-int LTR MaLR 1 293 -1287 * 4193 111 0 0 chr15 34094386 34094946 -51600808 + THE1B-int LTR MaLR 668 1227 -353 514 226 40 32 chr15 34096179 34096303 -51599451 - L2 LINE L2 -2 3311 3187 207 0 0 0 chr15 34096378 34096401 -51599353 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1461 137 17 0 chr15 34096415 34096648 -51599106 + AluSq SINE Alu 72 308 -5 305 287 274 6 chr15 34096775 34096939 -51598815 - MIR SINE MIR -34 228 21 2020 137 0 0 chr15 34097499 34097791 -51597963 - AluSx SINE Alu -20 292 1 253 213 46 9 chr15 34099041 34099149 -51596605 + CT-rich Low_complexity Low_complexity 1 112 0 226 258 79 34 chr15 34099894 34099983 -51595771 - MIR3 SINE MIR -15 193 101 447 233 227 6 chr15 34100013 34100176 -51595578 - MIR SINE MIR 0 262 64 237 65 0 0 chr15 34100583 34100614 -51595140 + (CA)n Simple_repeat Simple_repeat 1 31 0 2306 70 3 3 chr15 34100620 34100921 -51594833 - AluY SINE Alu -10 301 1 273 139 0 0 chr15 34100934 34100977 -51594777 - tRNA-Cys-TGC tRNA tRNA -32 43 1 2073 100 28 0 chr15 34100986 34101276 -51594478 - AluY SINE Alu -13 298 1 290 344 187 8 chr15 34101297 34101538 -51594216 - L3 LINE CR1 -116 1461 1178 230 274 0 16 chr15 34101860 34101922 -51593832 + MIR3 SINE MIR 130 190 -18 1828 150 0 10 chr15 34103637 34103930 -51591824 - AluJb SINE Alu -17 295 6 1031 147 0 0 chr15 34103942 34104105 -51591649 - AluSg/x SINE Alu -13 297 135 522 258 116 21 chr15 34104125 34104424 -51591330 + HAL1 LINE L1 816 1150 -1357 189 74 0 0 chr15 34104424 34104451 -51591303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 522 258 116 21 chr15 34104451 34104480 -51591274 + HAL1 LINE L1 1150 1175 -1332 1351 138 0 0 chr15 34104482 34104678 -51591076 + AluSx SINE Alu 1 196 -116 1226 267 140 32 chr15 34104708 34105323 -51590431 + HAL1 LINE L1 1237 1917 -590 17378 54 1 1 chr15 34105356 34105470 -51590284 + L1PA5 LINE L1 3123 3235 -2919 2017 117 3 0 chr15 34105470 34105753 -51590001 + AluSq SINE Alu 1 284 -29 846 94 0 0 chr15 34105647 34105754 -51590000 + AluSp/q SINE Alu 179 308 0 * 208 0 0 0 chr15 34105754 34105777 -51589977 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 17378 54 1 1 chr15 34105777 34108530 -51587224 + L1PA5 LINE L1 3234 6003 -151 1273 28 0 0 chr15 34108642 34108784 -51586970 + L1PA5 LINE L1 6002 6143 -11 234 0 0 0 chr15 34108791 34108817 -51586937 + (CAA)n Simple_repeat Simple_repeat 2 27 0 237 239 33 22 chr15 34108942 34109034 -51586720 + HAL1b LINE L1 746 838 -510 1770 153 0 0 chr15 34109152 34109407 -51586347 + AluSq SINE Alu 1 255 -58 324 115 0 0 chr15 34109507 34109559 -51586195 + AluSq SINE Alu 251 302 0 284 152 61 0 chr15 34109641 34109707 -51586047 + HAL1 LINE L1 2245 2314 -193 2189 128 3 0 chr15 34109713 34110017 -51585737 + AluSx SINE Alu 1 305 -7 2684 203 92 30 chr15 34110114 34110849 -51584905 - L1MC4a LINE L1 0 7808 7028 730 170 14 41 chr15 34110870 34111017 -51584737 - FRAM SINE Alu -11 165 23 1610 173 23 3 chr15 34111019 34111320 -51584434 - L1MD3 LINE L1 -932 7063 6757 336 48 0 0 chr15 34111321 34111363 -51584391 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1350 228 131 3 chr15 34111366 34111748 -51584006 - L1MC4a LINE L1 -1203 6605 6175 1355 154 3 89 chr15 34111748 34112041 -51583713 - AluJb SINE Alu -17 295 28 1187 148 0 0 chr15 34112050 34112226 -51583528 - MLT1C LTR MaLR -291 176 1 228 136 23 0 chr15 34112236 34112280 -51583474 - L1MC4a LINE L1 -1797 6011 5967 960 168 18 0 chr15 34112286 34112453 -51583301 - MER6 DNA MER2_type 0 865 696 725 143 0 0 chr15 34112562 34112690 -51583064 + AluSp/q SINE Alu 188 315 0 2277 68 0 23 chr15 34112698 34113005 -51582749 - AluY SINE Alu -11 300 1 3672 167 49 13 chr15 34113009 34113087 -51582667 - MER6 DNA MER2_type -171 694 620 1730 154 28 21 chr15 34113087 34113372 -51582382 + AluJo SINE Alu 5 291 -21 3672 167 49 13 chr15 34113372 34113963 -51581791 - MER6 DNA MER2_type -245 620 1 442 200 32 16 chr15 34113963 34114088 -51581666 - L1MC4a LINE L1 -1850 5958 5832 1890 97 0 8 chr15 34114092 34114339 -51581415 - AluSp SINE Alu -12 301 57 1648 198 113 31 chr15 34114468 34114947 -51580807 - L1MC4a LINE L1 -1980 5828 5311 2045 168 67 7 chr15 34114951 34115357 -51580397 - L1MB8 LINE L1 -31 6147 5718 342 287 86 77 chr15 34115447 34115668 -51580086 - L1MC4a LINE L1 -1312 4834 4607 2341 106 3 0 chr15 34115668 34115980 -51579774 + AluSp SINE Alu 1 313 0 342 287 86 77 chr15 34115980 34116096 -51579658 - L1MC4a LINE L1 -1539 4607 4494 2267 71 7 0 chr15 34117613 34117940 -51577814 + AluY SINE Alu 1 329 0 180 363 117 24 chr15 34119850 34120098 -51575656 + L2 LINE L2 2538 2808 -506 743 177 0 57 chr15 34120471 34120612 -51575142 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 34121026 34121047 -51574707 + AT_rich Low_complexity Low_complexity 1 21 0 2182 107 3 26 chr15 34121202 34121510 -51574244 + AluSx SINE Alu 1 301 -11 236 139 0 0 chr15 34121641 34121684 -51574070 - L1P LINE L1 -758 5396 5354 4579 85 33 0 chr15 34121685 34122288 -51573466 - L1PA11 LINE L1 -1 6173 5551 1559 159 71 29 chr15 34122503 34122669 -51573085 + MER33 DNA MER1_type 3 161 -2424 2193 101 3 3 chr15 34122669 34122957 -51572797 - AluSq SINE Alu -22 291 4 1559 159 71 29 chr15 34122957 34123099 -51572655 + MER33 DNA MER1_type 161 324 0 585 124 0 0 chr15 34124632 34124721 -51571033 - AluSp/q SINE Alu -5 308 220 893 184 149 10 chr15 34124821 34125022 -51570732 + MLT1E2 LTR MaLR 398 626 0 306 283 268 0 chr15 34125082 34125220 -51570534 + MIR SINE MIR 74 248 -14 22 0 0 0 chr15 34127435 34127457 -51568297 + AT_rich Low_complexity Low_complexity 1 22 0 360 241 43 34 chr15 34127651 34127789 -51567965 - MIR SINE MIR -61 147 32 316 304 36 18 chr15 34128271 34128383 -51567371 + L2 LINE L2 3156 3269 -3 1380 165 0 28 chr15 34130408 34130657 -51565097 - AluJo SINE Alu -11 301 60 1867 147 0 4 chr15 34130657 34130929 -51564825 - AluSx SINE Alu -41 271 1 442 171 248 16 chr15 34131911 34132040 -51563714 - MER103 DNA DNA -2 164 6 2057 128 3 3 chr15 34132128 34132424 -51563330 - AluSx SINE Alu -16 296 1 2000 111 0 11 chr15 34133016 34133287 -51562467 + AluSx SINE Alu 21 288 -24 1183 149 11 5 chr15 34134131 34134319 -51561435 + AluJb SINE Alu 1 189 -123 207 0 0 0 chr15 34134694 34134717 -51561037 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 418 360 49 17 chr15 34134727 34135074 -51560680 + L2 LINE L2 1752 2109 -1205 413 306 106 73 chr15 34135327 34135767 -51559987 + L2 LINE L2 2560 3009 -263 378 0 0 0 chr15 34135952 34135994 -51559760 + (CA)n Simple_repeat Simple_repeat 2 43 0 1659 166 3 37 chr15 34135994 34136154 -51559600 - AluJo SINE Alu -26 286 139 2115 117 0 7 chr15 34136154 34136444 -51559310 - AluSx SINE Alu -20 292 5 1659 166 3 37 chr15 34136444 34136579 -51559175 - AluJo SINE Alu -173 139 1 2242 107 0 10 chr15 34136768 34137076 -51558678 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr15 34137260 34137290 -51558464 + AT_rich Low_complexity Low_complexity 1 30 0 2131 125 0 13 chr15 34138635 34138948 -51556806 - AluJb SINE Alu -2 310 2 2297 109 3 0 chr15 34139316 34139620 -51556134 + AluSc SINE Alu 1 305 -4 387 0 0 0 chr15 34139620 34139663 -51556091 + (TA)n Simple_repeat Simple_repeat 1 43 0 335 285 72 53 chr15 34139723 34139930 -51555824 + L1MC4 LINE L1 7831 8041 -1 2342 142 46 24 chr15 34140497 34140552 -51555202 + L1MB3 LINE L1 5722 5774 -409 2177 120 7 0 chr15 34140552 34140852 -51554902 - AluSg SINE Alu -8 302 1 2342 142 46 24 chr15 34140852 34141212 -51554542 + L1MB3 LINE L1 5774 6146 -37 2254 54 43 0 chr15 34141213 34141491 -51554263 - AluY SINE Alu -21 290 1 1626 163 58 0 chr15 34142021 34142298 -51553456 - AluJo SINE Alu -19 293 1 2323 138 48 20 chr15 34142522 34142876 -51552878 + THE1B LTR MaLR 1 364 0 322 216 32 21 chr15 34142905 34143041 -51552713 - MIR SINE MIR -66 196 2 212 204 18 142 chr15 34143438 34143551 -51552203 - L2 LINE L2 -15 3298 3200 644 262 91 19 chr15 34144123 34144333 -51551421 + MIR SINE MIR 12 236 -26 1017 203 6 0 chr15 34144428 34144610 -51551144 - AluJo SINE Alu -12 300 118 231 165 134 41 chr15 34144782 34144879 -51550875 - L1MEd LINE L1 -5024 1095 990 835 274 85 0 chr15 34144907 34145130 -51550624 + MIR SINE MIR 10 251 -11 2276 99 26 3 chr15 34145404 34145707 -51550047 - AluSx SINE Alu -2 310 1 2203 116 0 10 chr15 34147285 34147587 -51548167 - AluSx SINE Alu 0 312 14 2042 120 0 0 chr15 34148792 34149068 -51546686 - AluSp SINE Alu -13 300 25 204 195 65 0 chr15 34149222 34149299 -51546455 + (TTTAA)n Simple_repeat Simple_repeat 1 82 0 25 0 0 0 chr15 34149311 34149336 -51546418 + AT_rich Low_complexity Low_complexity 1 25 0 2335 75 3 23 chr15 34149359 34149665 -51546089 - AluY SINE Alu -11 300 1 193 212 59 47 chr15 34149715 34149800 -51545954 + MIR SINE MIR 127 212 -50 373 268 84 78 chr15 34150608 34150787 -51544967 - LTR67 LTR ERVL -376 181 2 272 267 96 37 chr15 34150793 34150928 -51544826 + L1ME LINE L1 5762 5904 -280 278 125 0 0 chr15 34150952 34150992 -51544762 - LTR54 LTR ERV1 -68 442 403 2449 88 0 0 chr15 34151038 34151344 -51544410 - AluSp SINE Alu -7 306 1 2269 112 3 0 chr15 34151581 34151886 -51543868 + AluSq SINE Alu 1 306 -7 483 165 165 0 chr15 34152143 34152258 -51543496 - L1ME1 LINE L1 -105 6061 5928 306 0 0 0 chr15 34152258 34152292 -51543462 + (TA)n Simple_repeat Simple_repeat 2 35 0 222 62 0 0 chr15 34152303 34152335 -51543419 + (GA)n Simple_repeat Simple_repeat 1 32 0 2054 131 0 3 chr15 34152335 34152618 -51543136 - AluSx SINE Alu -30 282 1 255 260 63 39 chr15 34152892 34153019 -51542735 - MIR SINE MIR -37 225 96 286 31 0 0 chr15 34153020 34153052 -51542702 - U2 snRNA snRNA -150 38 7 294 338 26 2 chr15 34153058 34153154 -51542600 - MIR SINE MIR -101 107 10 1977 135 7 7 chr15 34153274 34153570 -51542184 + AluSq SINE Alu 1 296 -17 1012 97 35 14 chr15 34153570 34153714 -51542040 + AluSg/x SINE Alu 134 280 -32 1324 246 101 8 chr15 34153951 34154338 -51541416 + L1ME1 LINE L1 5739 6161 -5 217 333 20 29 chr15 34156072 34156174 -51539580 + L2 LINE L2 2584 2684 -630 184 336 49 35 chr15 34156276 34156419 -51539335 + L2 LINE L2 2825 2969 -303 457 248 79 82 chr15 34156444 34156737 -51539017 + L1ME4a LINE L1 5658 5957 -164 2082 138 20 0 chr15 34156886 34157190 -51538564 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 34157250 34157272 -51538482 + AT_rich Low_complexity Low_complexity 1 22 0 1154 165 5 28 chr15 34157295 34157519 -51538235 + AluJo SINE Alu 87 294 -18 377 281 26 39 chr15 34157640 34157793 -51537961 - L1MC4a LINE L1 -1882 5926 5776 1977 139 13 13 chr15 34157872 34158174 -51537580 - AluSx SINE Alu -10 302 1 727 250 61 5 chr15 34158356 34158568 -51537186 - MER58A DNA MER1_type 0 224 1 506 244 0 53 chr15 34158568 34158699 -51537055 + L2 LINE L2 3189 3312 -1 1927 128 14 11 chr15 34158979 34159288 -51536466 + AluSx SINE Alu 1 310 0 334 172 17 0 chr15 34159307 34159365 -51536389 + MER90 LTR ERV1 1 59 -516 * 2167 169 90 0 chr15 34159364 34159766 -51535988 + MER90 LTR ERV1 177 614 0 302 258 34 11 chr15 34160568 34160657 -51535097 + L2 LINE L2 3223 3313 0 1755 109 11 0 chr15 34160985 34161259 -51534495 + L1MA2 LINE L1 6028 6304 0 21 0 0 0 chr15 34161358 34161379 -51534375 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr15 34162078 34162113 -51533641 + AT_rich Low_complexity Low_complexity 1 35 0 707 123 39 32 chr15 34162996 34163150 -51532604 + L1MA7 LINE L1 6137 6291 0 465 322 54 24 chr15 34163794 34163967 -51531787 + L1M4 LINE L1 4456 4622 -1524 2325 95 3 3 chr15 34163967 34164271 -51531483 + AluSp SINE Alu 1 304 -9 465 322 54 24 chr15 34164271 34164467 -51531287 + L1M4 LINE L1 4622 4836 -1310 2356 102 0 0 chr15 34164483 34164786 -51530968 + AluSx SINE Alu 1 303 -9 305 324 50 41 chr15 34164853 34165072 -51530682 + L1M4 LINE L1 4924 5144 -1002 247 242 16 81 chr15 34165496 34165520 -51530234 + CT-rich Low_complexity Low_complexity 3 27 -149 1587 165 69 0 chr15 34165520 34165781 -51529973 - AluJo SINE Alu -33 279 1 247 242 16 81 chr15 34165781 34165942 -51529812 + CT-rich Low_complexity Low_complexity 27 176 0 2112 137 0 0 chr15 34167341 34167640 -51528114 + AluSx SINE Alu 1 299 -13 2401 131 8 14 chr15 34167940 34168306 -51527448 + THE1B LTR MaLR 1 364 0 348 309 86 37 chr15 34168393 34168555 -51527199 - MIR3 SINE MIR -9 199 30 21 82 0 0 chr15 34169092 34169141 -51526613 + AT_rich Low_complexity Low_complexity 1 49 0 291 28 0 0 chr15 34169426 34169462 -51526292 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1819 167 0 3 chr15 34170091 34170379 -51525375 - AluJb SINE Alu -2 310 24 235 196 36 0 chr15 34171768 34171824 -51523930 + L1ME4a LINE L1 6059 6116 -5 225 0 0 0 chr15 34171842 34171867 -51523887 + (TAA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr15 34171940 34171977 -51523777 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr15 34173451 34173491 -51522263 + AT_rich Low_complexity Low_complexity 1 40 0 1994 257 75 52 chr15 34173731 34174261 -51521493 + L1MD3 LINE L1 11 527 -5734 2150 126 3 0 chr15 34174261 34174562 -51521192 + AluSx SINE Alu 3 304 -8 1994 257 75 52 chr15 34174562 34174869 -51520885 + L1MD3 LINE L1 527 825 -5436 1930 134 0 28 chr15 34174869 34175185 -51520569 - AluSx SINE Alu 0 308 1 1994 257 75 52 chr15 34175185 34176113 -51519641 + L1MD3 LINE L1 825 1875 -4386 352 272 89 0 chr15 34176145 34176374 -51519380 + L1MD3 LINE L1 1921 2176 -3904 23 54 0 0 chr15 34176387 34176424 -51519330 + AT_rich Low_complexity Low_complexity 1 37 0 806 163 0 15 chr15 34176437 34176572 -51519182 - FLAM_C SINE Alu 0 133 1 4424 206 70 24 chr15 34176575 34177667 -51518087 - L1MC4a LINE L1 0 7808 6667 509 263 67 0 chr15 34177676 34177855 -51517899 + L1MD3 LINE L1 2168 2358 -3722 * 1075 227 100 19 chr15 34177840 34178379 -51517375 + L1MD3 LINE L1 5182 5411 -685 2100 128 3 6 chr15 34178379 34178691 -51517063 - AluSq SINE Alu -2 311 1 1075 227 100 19 chr15 34178691 34178755 -51516999 + L1MD3 LINE L1 5411 5468 -628 1652 295 119 26 chr15 34178775 34179575 -51516179 + HAL1 LINE L1 489 1412 -1095 2110 125 0 13 chr15 34179575 34179878 -51515876 + AluSg SINE Alu 1 299 -11 1652 295 119 26 chr15 34179878 34180137 -51515617 + HAL1 LINE L1 1412 1646 -861 743 239 115 0 chr15 34180143 34180352 -51515402 + HAL1 LINE L1 1683 1915 -592 338 289 79 0 chr15 34180353 34180467 -51515287 + MIR SINE MIR 139 261 -1 2297 106 3 0 chr15 34180697 34181008 -51514746 - AluSq SINE Alu -1 312 1 180 0 0 0 chr15 34181202 34181222 -51514532 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1155 183 18 18 chr15 34181369 34181588 -51514166 - MER20 DNA MER1_type 0 219 1 21607 149 44 17 chr15 34181675 34183246 -51512508 + L1MA3 LINE L1 16 1542 -6023 408 20 0 0 chr15 34183246 34183295 -51512459 + (CA)n Simple_repeat Simple_repeat 2 50 0 21607 149 44 17 chr15 34183295 34183447 -51512307 + L1MA3 LINE L1 1542 1688 -5877 2297 114 0 0 chr15 34183447 34183745 -51512009 - AluSx SINE Alu -12 300 3 21607 149 44 17 chr15 34183745 34186052 -51509702 + L1MA3 LINE L1 1688 3930 -3635 2127 79 28 7 chr15 34186052 34186342 -51509412 + AluSc SINE Alu 1 296 -13 21607 149 44 17 chr15 34186342 34188751 -51507003 + L1MA3 LINE L1 3930 6645 -920 4252 97 36 33 chr15 34188751 34189255 -51506499 + L1MA3 LINE L1 7021 7536 -188 1964 136 0 7 chr15 34189255 34189565 -51506189 - AluSx SINE Alu 0 313 6 4252 97 36 33 chr15 34189565 34189755 -51505999 + L1MA3 LINE L1 7536 7724 0 2883 166 75 9 chr15 34189762 34190488 -51505266 - L1MB8 LINE L1 -9 6169 5373 1942 127 3 3 chr15 34191551 34191897 -51503857 + AluSq SINE Alu 1 346 0 22 35 0 0 chr15 34192138 34192167 -51503587 + AT_rich Low_complexity Low_complexity 1 29 0 347 324 29 12 chr15 34192314 34192484 -51503270 - L1MC4a LINE L1 -1911 5897 5725 225 253 67 0 chr15 34192499 34192574 -51503180 - L1MC4a LINE L1 -2064 5744 5665 1099 171 35 5 chr15 34193841 34194040 -51501714 - MER2 DNA MER2_type -135 210 6 652 267 81 0 chr15 34195138 34195299 -51500455 - MER5A DNA MER1_type -12 177 4 369 280 84 0 chr15 34195384 34195527 -51500227 + MER103 DNA DNA 8 162 -4 1880 156 3 7 chr15 34195748 34196050 -51499704 - AluSx SINE Alu -11 301 1 42 71 0 0 chr15 34196453 34196537 -51499217 + AT_rich Low_complexity Low_complexity 1 84 0 2364 62 3 3 chr15 34196552 34196840 -51498914 - AluY SINE Alu -23 288 1 1793 136 23 36 chr15 34198199 34198508 -51497246 - AluJo SINE Alu -7 305 1 1075 190 5 5 chr15 34199287 34199492 -51496262 + MER3 DNA MER1_type 2 206 -3 929 97 8 0 chr15 34200630 34200764 -51494990 - L1MA2 LINE L1 0 6304 6170 29 0 0 0 chr15 34201475 34201504 -51494250 + AT_rich Low_complexity Low_complexity 1 29 0 289 219 106 32 chr15 34202076 34202199 -51493555 + L1MC5 LINE L1 7782 7913 -48 1010 158 0 0 chr15 34202416 34202594 -51493160 + AluSg/x SINE Alu 131 308 0 269 303 58 10 chr15 34202906 34203030 -51492724 + MIR SINE MIR 43 173 -62 2488 57 0 3 chr15 34203110 34203408 -51492346 + AluY SINE Alu 1 297 -14 207 0 0 0 chr15 34203413 34203436 -51492318 + (TA)n Simple_repeat Simple_repeat 1 23 0 1905 120 20 10 chr15 34203444 34203736 -51492018 + AluSq SINE Alu 1 295 -18 2117 135 0 0 chr15 34203866 34204169 -51491585 - AluSx SINE Alu -8 304 2 2308 87 7 0 chr15 34204391 34204689 -51491065 + AluSp SINE Alu 13 312 -1 382 230 184 70 chr15 34204871 34205258 -51490496 + HAL1 LINE L1 647 1077 -1430 2052 38 15 0 chr15 34205259 34205521 -51490233 - L1PA5 LINE L1 -807 5339 5074 7156 30 0 0 chr15 34205521 34206360 -51489394 + L1PA5 LINE L1 5312 6152 -2 26 23 0 23 chr15 34206360 34206381 -51489373 + AT_rich Low_complexity Low_complexity 1 21 -22 2122 124 10 0 chr15 34206381 34206688 -51489066 + AluSx SINE Alu 1 310 -2 26 23 0 23 chr15 34206688 34206710 -51489044 + AT_rich Low_complexity Low_complexity 21 43 0 525 238 56 12 chr15 34206726 34206886 -51488868 + HAL1 LINE L1 1127 1293 -1214 254 309 0 0 chr15 34207748 34207816 -51487938 - L2 LINE L2 0 3313 3246 466 248 161 25 chr15 34208101 34208262 -51487492 + MER5A DNA MER1_type 7 189 0 636 217 25 0 chr15 34208328 34208448 -51487306 + FLAM_A SINE Alu 1 123 -10 305 313 139 43 chr15 34209804 34210414 -51485340 + L2 LINE L2 1793 2461 -853 429 307 85 112 chr15 34210588 34210700 -51485054 + L2 LINE L2 2838 2951 -321 1198 156 38 5 chr15 34210700 34210912 -51484842 + MER20 DNA MER1_type 1 219 0 429 307 85 112 chr15 34210912 34211102 -51484652 + L2 LINE L2 2951 3127 -145 2493 34 3 0 chr15 34211102 34211395 -51484359 - AluY SINE Alu -17 294 1 429 307 85 112 chr15 34211395 34211537 -51484217 + L2 LINE L2 3127 3271 -1 21 89 0 0 chr15 34212009 34212065 -51483689 + AT_rich Low_complexity Low_complexity 1 56 0 1558 182 23 0 chr15 34219433 34219735 -51476019 + MLT2C2 LTR ERVL 1 309 -155 219 200 47 12 chr15 34219736 34219821 -51475933 + (TA)n Simple_repeat Simple_repeat 1 88 0 306 122 0 0 chr15 34219826 34219875 -51475879 + MLT2C2 LTR ERVL 366 414 0 373 243 40 81 chr15 34220681 34220829 -51474925 - MIR SINE MIR -46 216 75 1864 114 0 88 chr15 34220893 34221201 -51474553 - AluSx SINE Alu -13 299 19 258 320 83 0 chr15 34221622 34221778 -51473976 + L1ME3A LINE L1 5616 5784 -378 2024 155 0 0 chr15 34221933 34222230 -51473524 - AluSq SINE Alu -16 297 1 314 289 89 61 chr15 34222300 34222480 -51473274 + L1ME3A LINE L1 5963 6147 -23 1562 122 9 0 chr15 34222549 34222778 -51472976 + AluSg/x SINE Alu 79 309 -1 2058 129 0 3 chr15 34222933 34223228 -51472526 + AluSc SINE Alu 1 294 -15 2201 131 0 0 chr15 34224353 34224665 -51471089 + AluSx SINE Alu 1 312 0 294 117 44 73 chr15 34225543 34225680 -51470074 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 1658 173 14 0 chr15 34226055 34226333 -51469421 + AluJb SINE Alu 1 282 -30 2149 129 0 7 chr15 34226365 34226675 -51469079 + AluSx SINE Alu 5 312 0 1449 161 66 8 chr15 34226883 34227126 -51468628 - AluJb SINE Alu -17 295 39 2051 102 0 7 chr15 34227604 34227879 -51467875 - AluSx SINE Alu -39 273 1 234 314 85 60 chr15 34227887 34228275 -51467479 + L2 LINE L2 2659 3059 -213 22 35 0 0 chr15 34228476 34228505 -51467249 + AT_rich Low_complexity Low_complexity 1 29 0 1489 165 11 11 chr15 34228892 34229171 -51466583 - L1PA15 LINE L1 0 6165 5887 22 0 0 0 chr15 34229181 34229203 -51466551 + AT_rich Low_complexity Low_complexity 1 22 0 369 272 64 8 chr15 34229372 34229607 -51466147 + HAL1 LINE L1 945 1192 -1315 230 136 45 0 chr15 34229613 34229657 -51466097 + MER105 DNA DNA 6 51 -153 369 240 0 52 chr15 34229669 34229765 -51465989 + MER58 DNA MER1_type 9 99 -242 470 186 10 0 chr15 34229779 34229876 -51465878 + MER58 DNA MER1_type 2320 2417 -3 661 182 34 0 chr15 34229878 34230026 -51465728 + MER105 DNA DNA 45 197 -7 366 289 104 44 chr15 34230030 34230176 -51465578 + HAL1 LINE L1 1198 1334 -1173 2248 141 25 0 chr15 34230176 34230531 -51465223 + THE1B LTR MaLR 1 364 0 366 289 104 44 chr15 34230531 34230768 -51464986 + HAL1 LINE L1 1334 1604 -903 1565 148 32 0 chr15 34231314 34231597 -51464157 - L1MB8 LINE L1 -6 6172 5881 2197 107 0 40 chr15 34231597 34231765 -51463989 + THE1C LTR MaLR 2 150 -225 7106 43 3 20 chr15 34231765 34233260 -51462494 + L1PA5 LINE L1 4670 6149 -5 2197 107 0 40 chr15 34233260 34233438 -51462316 + THE1C LTR MaLR 150 334 -41 2200 101 3 0 chr15 34233439 34233725 -51462029 + AluSq SINE Alu 1 287 -26 335 130 19 0 chr15 34233750 34233804 -51461950 + THE1C LTR MaLR 321 375 0 1121 132 56 0 chr15 34233804 34234017 -51461737 - L1MB8 LINE L1 -298 5886 5662 42 0 0 0 chr15 34234343 34234385 -51461369 + AT_rich Low_complexity Low_complexity 1 42 0 397 225 88 88 chr15 34234389 34234428 -51461326 - L1MC4a LINE L1 -1880 5928 5890 2289 121 3 0 chr15 34234428 34234735 -51461019 - AluSx SINE Alu -4 308 1 397 225 88 88 chr15 34234735 34234877 -51460877 - L1MC4a LINE L1 -1917 5891 5747 588 285 72 13 chr15 34234883 34235118 -51460636 + MLT1L LTR MaLR 39 287 -328 2339 103 0 3 chr15 34235133 34235433 -51460321 + AluSc SINE Alu 1 299 -10 238 302 170 19 chr15 34235809 34235915 -51459839 + L2 LINE L2 3116 3237 -35 2148 144 0 0 chr15 34236354 34236660 -51459094 - AluSq SINE Alu -7 306 1 2930 193 40 30 chr15 34237239 34237646 -51458108 + L1MB1 LINE L1 4490 4891 -1255 1995 131 26 26 chr15 34237646 34237951 -51457803 + AluSc SINE Alu 1 305 -4 2930 193 40 30 chr15 34237951 34238351 -51457403 + L1MB1 LINE L1 4891 5305 -841 1517 201 23 23 chr15 34238393 34238702 -51457052 + AluJb SINE Alu 3 311 -1 1761 168 70 22 chr15 34238716 34239074 -51456680 + THE1C LTR MaLR 1 375 0 2909 174 43 60 chr15 34239074 34239991 -51455763 + L1MB1 LINE L1 5297 6176 -2 366 161 32 0 chr15 34240048 34240141 -51455613 + CT-rich Low_complexity Low_complexity 2 97 0 822 230 62 44 chr15 34240163 34240389 -51455365 - AluJo SINE Alu -82 230 1 33 25 0 0 chr15 34240457 34240497 -51455257 + AT_rich Low_complexity Low_complexity 1 40 0 2309 243 98 20 chr15 34240560 34241131 -51454623 - L1M4 LINE L1 -2739 3407 2882 2038 136 3 29 chr15 34241131 34241440 -51454314 - AluSx SINE Alu -11 301 1 2309 243 98 20 chr15 34241440 34241901 -51453853 - L1M4 LINE L1 -3264 2882 2295 1921 170 120 8 chr15 34241904 34242287 -51453467 + MSTA LTR MaLR 3 428 0 6277 198 42 6 chr15 34242287 34243588 -51452166 + MSTA-int LTR MaLR 1 1348 -303 22649 106 8 13 chr15 34243589 34247154 -51448600 + L1PA5 LINE L1 13 3560 -2586 13075 41 5 0 chr15 34247154 34249530 -51446224 + L1PA5 LINE L1 3774 6153 -1 713 301 178 6 chr15 34250040 34250382 -51445372 - L2 LINE L2 -1279 2035 1635 201 74 0 0 chr15 34251162 34251189 -51444565 + (A)n Simple_repeat Simple_repeat 1 27 0 2244 80 0 21 chr15 34251614 34251930 -51443824 + AluY SINE Alu 1 310 0 482 222 203 57 chr15 34252479 34252551 -51443203 - MIR SINE MIR 0 262 202 2244 105 3 0 chr15 34252551 34252856 -51442898 - AluSx SINE Alu -6 306 1 482 222 203 57 chr15 34252856 34252995 -51442759 - MIR SINE MIR -60 202 20 2288 122 0 0 chr15 34252997 34253309 -51442445 - AluSx SINE Alu 0 312 1 1782 86 0 4 chr15 34253316 34253548 -51442206 - AluSc SINE Alu -39 270 40 254 352 86 32 chr15 34253579 34253985 -51441769 + L2 LINE L2 1798 2225 -1089 2233 116 3 0 chr15 34254098 34254391 -51441363 - AluSp SINE Alu -19 294 1 1476 132 40 158 chr15 34254499 34254543 -51441211 - L1MB1 LINE L1 0 6168 6120 357 82 0 0 chr15 34254543 34254592 -51441162 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 1711 162 0 30 chr15 34254600 34254896 -51440858 - AluJb SINE Alu -24 288 2 1476 132 40 158 chr15 34254896 34255268 -51440486 - L1MB1 LINE L1 -55 6113 5699 522 221 0 0 chr15 34255268 34255372 -51440382 - U13 snRNA snRNA 0 104 1 2047 134 20 13 chr15 34255382 34255681 -51440073 - AluJb SINE Alu -11 301 1 1476 132 40 158 chr15 34255681 34255700 -51440054 - L1MB1 LINE L1 -479 5689 5772 407 18 0 0 chr15 34255700 34255755 -51439999 - L1MA3 LINE L1 0 6305 6251 1476 132 40 158 chr15 34255755 34255797 -51439957 - L1MB1 LINE L1 -395 5773 5728 * 3782 238 55 40 chr15 34255792 34257123 -51438631 - L1M4 LINE L1 -901 5245 3890 4705 44 5 0 chr15 34257123 34257694 -51438060 + L1PA6 LINE L1 5576 6149 -5 3782 238 55 40 chr15 34257694 34257771 -51437983 - L1M4 LINE L1 -2256 3890 3816 3161 240 63 41 chr15 34257761 34259033 -51436721 - L1M4 LINE L1 -2165 3915 2616 * 1546 235 135 5 chr15 34259059 34259459 -51436295 + MLT1E LTR MaLR 1 452 -141 1744 156 3 3 chr15 34259459 34259738 -51436016 - MER54A LTR ERVL 0 901 623 2241 143 42 29 chr15 34259738 34260275 -51435479 + MLT2A2 LTR ERVL 1 546 -8 3558 163 36 16 chr15 34260280 34260895 -51434859 - MER54A LTR ERVL -272 629 3 748 148 19 77 chr15 34260920 34261033 -51434721 + MLT1E LTR MaLR 448 552 -41 2197 85 4 0 chr15 34261033 34261336 -51434418 - AluY SINE Alu 0 304 1 748 148 19 77 chr15 34261336 34261376 -51434378 + MLT1E LTR MaLR 552 593 0 1685 265 77 61 chr15 34261383 34262011 -51433743 - L1MEc LINE L1 -3418 2662 2045 2245 123 0 0 chr15 34262011 34262311 -51433443 - AluSq SINE Alu -13 300 1 1685 265 77 61 chr15 34262311 34262351 -51433403 - L1MEc LINE L1 -4035 2045 2007 2065 123 23 0 chr15 34262351 34262652 -51433102 - AluSx SINE Alu -4 308 1 1685 265 77 61 chr15 34262652 34262696 -51433058 - L1MEc LINE L1 -4073 2007 1965 1502 166 0 0 chr15 34262696 34262937 -51432817 - AluJb SINE Alu -9 303 63 1685 265 77 61 chr15 34262937 34263856 -51431898 - L1MEc LINE L1 -4115 1965 1062 198 0 0 0 chr15 34263856 34263878 -51431876 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1685 265 77 61 chr15 34263878 34264218 -51431536 - L1MEc LINE L1 -5018 1062 729 457 75 12 12 chr15 34264218 34264298 -51431456 + (TG)n Simple_repeat Simple_repeat 2 81 0 1685 265 77 61 chr15 34264298 34264310 -51431444 - L1MEc LINE L1 -5351 729 719 1826 184 83 32 chr15 34264310 34264718 -51431036 + MSTB1 LTR MaLR 3 431 -1 1685 265 77 61 chr15 34264718 34264764 -51430990 - L1MEc LINE L1 -5361 719 675 1514 172 4 15 chr15 34264764 34265032 -51430722 - AluJb SINE Alu -10 302 38 1685 265 77 61 chr15 34265032 34265094 -51430660 - L1MEc LINE L1 -5405 675 444 429 54 0 0 chr15 34265221 34265277 -51430477 + (TATG)n Simple_repeat Simple_repeat 2 57 0 772 111 0 0 chr15 34265277 34265376 -51430378 - AluSx SINE Alu -20 292 194 1060 113 0 7 chr15 34265377 34265519 -51430235 - AluSx SINE Alu -172 141 1 876 235 34 0 chr15 34265605 34265809 -51429945 - L1MEc LINE L1 -5853 217 7 31 92 0 0 chr15 34266170 34266257 -51429497 + AT_rich Low_complexity Low_complexity 1 87 0 2107 118 10 3 chr15 34266464 34266753 -51429001 - AluSx SINE Alu -21 291 1 493 263 44 67 chr15 34266843 34267008 -51428746 + L1MC4 LINE L1 7753 7909 -133 384 22 0 0 chr15 34267008 34267053 -51428701 + (TG)n Simple_repeat Simple_repeat 2 46 0 493 263 44 67 chr15 34267053 34267184 -51428570 + L1MC4 LINE L1 7909 8042 0 22 56 0 0 chr15 34267190 34267226 -51428528 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 34267252 34267281 -51428473 + AT_rich Low_complexity Low_complexity 1 29 0 1400 191 70 0 chr15 34267319 34267576 -51428178 + AluJo SINE Alu 14 288 -24 389 279 78 6 chr15 34267578 34267757 -51427997 + L1ME LINE L1 4462 4653 -1493 390 290 92 25 chr15 34268219 34268430 -51427324 + L1ME LINE L1 5514 5714 -456 * 20658 167 35 19 chr15 34268427 34270910 -51424844 + L1M1 LINE L1 12 2452 -5244 2220 118 0 0 chr15 34270910 34271206 -51424548 + AluSx SINE Alu 1 296 -16 20658 167 35 19 chr15 34271206 34271441 -51424313 + L1M1 LINE L1 2452 2682 -5014 216 0 0 0 chr15 34271441 34271465 -51424289 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20658 167 35 19 chr15 34271465 34272824 -51422930 + L1M1 LINE L1 2682 4017 -3679 1301 185 43 46 chr15 34272824 34273127 -51422627 + AluJo SINE Alu 1 302 -10 20658 167 35 19 chr15 34273127 34274450 -51421304 + L1M1 LINE L1 4017 5316 -2380 2383 100 7 0 chr15 34274450 34274760 -51420994 - AluSx SINE Alu 0 312 1 20658 167 35 19 chr15 34274760 34276182 -51419572 + L1M1 LINE L1 5316 6953 -743 2249 85 3 16 chr15 34276195 34276500 -51419254 - AluY SINE Alu -10 301 1 2029 141 64 0 chr15 34276733 34277059 -51418695 + MER7A DNA MER2_type 2 346 0 418 192 15 92 chr15 34277120 34277250 -51418504 + L1MEd LINE L1 151 270 -5935 23 54 0 0 chr15 34277289 34277326 -51418428 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 34278625 34278649 -51417105 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr15 34278757 34278801 -51416953 + AT_rich Low_complexity Low_complexity 1 44 0 2943 3 0 0 chr15 34278907 34279219 -51416535 - AluYb8 SINE Alu -5 313 2 1816 98 35 105 chr15 34279485 34279800 -51415954 - AluSx SINE Alu -19 293 1 317 280 124 42 chr15 34279916 34280109 -51415645 + HAL1 LINE L1 586 794 -1713 * 624 294 5 5 chr15 34280106 34280300 -51415454 + HAL1 LINE L1 1700 1893 -614 237 83 0 0 chr15 34280347 34280383 -51415371 + (TG)n Simple_repeat Simple_repeat 2 37 0 2136 88 0 82 chr15 34280601 34280932 -51414822 - AluSx SINE Alu -8 304 1 738 208 113 0 chr15 34281236 34281404 -51414350 + MER5A DNA MER1_type 1 187 -2 2776 188 97 21 chr15 34281676 34282294 -51413460 + L1ME2 LINE L1 5481 6145 -19 294 269 12 54 chr15 34282313 34282407 -51413347 + L1MEd LINE L1 1623 1709 -4687 2384 81 0 7 chr15 34282407 34282703 -51413051 + AluSq SINE Alu 1 294 -19 294 269 12 54 chr15 34282703 34282775 -51412979 + L1MEd LINE L1 1709 1782 -4614 207 139 56 0 chr15 34282853 34282889 -51412865 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 185 381 52 19 chr15 34282893 34283048 -51412706 + L2 LINE L2 2752 2911 -403 22 0 0 0 chr15 34283152 34283174 -51412580 + AT_rich Low_complexity Low_complexity 1 22 0 2152 135 3 0 chr15 34283181 34283478 -51412276 - AluSx SINE Alu -14 298 1 211 333 162 8 chr15 34283553 34283670 -51412084 + L2 LINE L2 3134 3268 -4 340 275 72 29 chr15 34283924 34284062 -51411692 + MIR SINE MIR 119 262 0 193 173 39 77 chr15 34284703 34284755 -51410999 + MIR3 SINE MIR 155 204 -4 3394 233 107 29 chr15 34285116 34285322 -51410432 + L1MC4 LINE L1 6463 6652 -1390 285 29 0 0 chr15 34285322 34285356 -51410398 + (CA)n Simple_repeat Simple_repeat 2 35 0 3394 233 107 29 chr15 34285356 34286148 -51409606 + L1MC4 LINE L1 6652 7548 -494 2494 70 0 19 chr15 34286148 34286462 -51409292 - AluY SINE Alu -3 308 1 3394 233 107 29 chr15 34286462 34286502 -51409252 + L1MC4 LINE L1 7548 7583 -459 6867 15 0 0 chr15 34286502 34287587 -51408167 - L1P1 LINE L1 -464 5691 4607 4218 19 2 0 chr15 34287577 34288054 -51407700 + L1HS LINE L1 5677 6154 -1 * 282 287 13 13 chr15 34288066 34288522 -51407232 + L1MD3 LINE L1 7578 8019 -19 2194 101 0 0 chr15 34288522 34288808 -51406946 + AluSx SINE Alu 1 286 -26 282 287 13 13 chr15 34288808 34288828 -51406926 + L1MD3 LINE L1 8019 8038 0 324 283 62 0 chr15 34289249 34289362 -51406392 - LTR67 LTR ERVL -4 553 434 3233 127 6 30 chr15 34289387 34289890 -51405864 + MER1A DNA MER1_type 37 527 -2 452 260 0 0 chr15 34290998 34291094 -51404660 + L2 LINE L2 3175 3270 -2 266 138 17 0 chr15 34293181 34293239 -51402515 + GA-rich Low_complexity Low_complexity 1 59 0 241 200 25 58 chr15 34293331 34293451 -51402303 + (CGGGG)n Simple_repeat Simple_repeat 4 119 0 2003 120 3 3 chr15 34294341 34294625 -51401129 + AluSx SINE Alu 1 284 -28 568 321 29 29 chr15 34296402 34296648 -51399106 - MLT1J LTR MaLR -40 471 226 2074 222 113 9 chr15 34296821 34297014 -51398740 + L1MC4 LINE L1 6463 6635 -1407 339 25 0 0 chr15 34297014 34297054 -51398700 + (CA)n Simple_repeat Simple_repeat 1 40 0 2074 222 113 9 chr15 34297054 34297428 -51398326 + L1MC4 LINE L1 6635 7089 -953 754 219 306 0 chr15 34297430 34297727 -51398027 + L1MC4 LINE L1 7240 7627 -415 358 118 118 59 chr15 34297730 34297815 -51397939 - MLT2B1 LTR ERVL 0 520 431 1737 154 0 4 chr15 34297822 34298081 -51397673 - AluSx SINE Alu -52 260 3 266 310 152 15 chr15 34298302 34298499 -51397255 + L2 LINE L2 2241 2464 -850 290 333 56 77 chr15 34298698 34298748 -51397006 - LTR16C LTR ERVL -32 459 409 943 229 50 5 chr15 34298748 34298949 -51396805 - MER63A DNA MER1_type 0 210 1 290 333 56 77 chr15 34298949 34299183 -51396571 - LTR16C LTR ERVL -82 409 181 896 291 67 46 chr15 34299533 34300014 -51395740 - ERVL LTR ERVL -399 5365 4875 881 143 0 0 chr15 34300591 34300717 -51395037 - AluSg/x SINE Alu -16 294 169 667 116 11 0 chr15 34301362 34301457 -51394297 + MSTD LTR MaLR 1 96 -300 1283 156 18 53 chr15 34301459 34301684 -51394070 + AluJo SINE Alu 1 217 -95 264 130 74 19 chr15 34301684 34301738 -51394016 + MSTB2 LTR MaLR 390 446 -11 1922 118 8 0 chr15 34301777 34302039 -51393715 + AluSx SINE Alu 3 266 -46 1307 90 6 6 chr15 34302039 34302206 -51393548 - AluSc SINE Alu -142 167 1 2829 3 0 0 chr15 34302545 34302845 -51392909 - AluYa5 SINE Alu -11 300 1 27 0 0 0 chr15 34302850 34302877 -51392877 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr15 34303687 34303721 -51392033 + AT_rich Low_complexity Low_complexity 1 34 0 185 94 31 0 chr15 34306764 34306796 -51388958 + (CGG)n Simple_repeat Simple_repeat 2 34 0 254 182 0 0 chr15 34306796 34306851 -51388903 + (CTG)n Simple_repeat Simple_repeat 2 56 0 585 110 0 0 chr15 34306851 34306960 -51388794 + (CGG)n Simple_repeat Simple_repeat 3 111 0 2265 92 0 3 chr15 34307324 34307606 -51388148 + AluSg SINE Alu 11 291 -19 2025 136 3 7 chr15 34307885 34308187 -51387567 - AluSx SINE Alu -8 304 4 1129 230 75 0 chr15 34308205 34308483 -51387271 - L1ME3A LINE L1 -13 6157 5859 2597 163 36 13 chr15 34308487 34308934 -51386820 - LTR32 LTR ERVL 0 471 15 1784 215 75 24 chr15 34308941 34309476 -51386278 - L1ME3A LINE L1 -317 5849 5275 1856 147 60 0 chr15 34309505 34309790 -51385964 + AluJb SINE Alu 3 304 -8 2490 91 6 3 chr15 34310053 34310382 -51385372 + THE1C LTR MaLR 1 330 -45 2298 85 7 0 chr15 34310382 34310675 -51385079 + AluSq SINE Alu 1 295 -18 1828 72 0 5 chr15 34310692 34310915 -51384839 - AluSc SINE Alu -87 222 1 27 0 0 0 chr15 34310925 34310952 -51384802 + AT_rich Low_complexity Low_complexity 1 27 0 2517 58 0 13 chr15 34311536 34311844 -51383910 + AluY SINE Alu 1 304 -7 1716 182 17 10 chr15 34312233 34312530 -51383224 + AluJb SINE Alu 1 299 -13 2939 159 116 16 chr15 34312617 34313177 -51382577 - LTR26E LTR ERV1 -2 620 5 2932 73 3 11 chr15 34313177 34313534 -51382220 - THE1A LTR MaLR 0 355 1 12818 77 6 6 chr15 34313534 34315114 -51380640 - THE1A-int LTR MaLR 0 1580 1 2890 82 3 3 chr15 34315114 34315469 -51380285 - THE1A LTR MaLR 0 355 1 2471 161 157 75 chr15 34315684 34316355 -51379399 - LTR8A LTR ERV1 -1 726 1 633 282 71 34 chr15 34316530 34316796 -51378958 - MLT1L LTR MaLR -339 276 1 467 345 80 4 chr15 34316823 34317049 -51378705 + L2 LINE L2 2841 3083 -189 3004 179 34 20 chr15 34317083 34317640 -51378114 + MER82 DNA MER2_type 1 565 -88 1208 227 126 64 chr15 34317640 34317962 -51377792 + LTR48 LTR ERV1 1 302 -342 1574 175 13 20 chr15 34317962 34318265 -51377489 - AluJb SINE Alu -11 301 1 1208 227 126 64 chr15 34318265 34318584 -51377170 + LTR48 LTR ERV1 302 629 -15 422 213 0 0 chr15 34318606 34318681 -51377073 + MER82 DNA MER2_type 570 644 -9 2122 181 84 73 chr15 34318681 34319229 -51376525 + MLT2B3 LTR ERVL 1 554 0 10465 183 40 17 chr15 34319720 34321177 -51374577 - L1PA16 LINE L1 -135 6031 4608 1868 135 85 0 chr15 34321177 34321458 -51374296 - AluSx SINE Alu -5 307 3 10465 183 40 17 chr15 34321458 34322801 -51372953 - L1PA16 LINE L1 -1558 4608 3136 1966 136 0 30 chr15 34322801 34323096 -51372658 - AluSx SINE Alu -17 295 10 10465 183 40 17 chr15 34323096 34323500 -51372254 - L1PA16 LINE L1 -3030 3136 2743 7176 111 32 16 chr15 34323844 34324896 -51370858 + MER11C LTR ERVK 3 1071 0 1241 279 72 65 chr15 34324973 34325231 -51370523 - L1M4 LINE L1 -1371 4775 4520 2213 118 0 7 chr15 34325231 34325528 -51370226 + AluSx SINE Alu 2 296 -16 1241 279 72 65 chr15 34325528 34326075 -51369679 - L1M4 LINE L1 -1626 4520 3964 2391 71 0 14 chr15 34326138 34326435 -51369319 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 34326435 34326456 -51369298 + AT_rich Low_complexity Low_complexity 1 21 0 353 228 118 37 chr15 34326566 34326702 -51369052 - L1M4 LINE L1 -2228 3918 3772 1038 230 161 50 chr15 34326704 34327146 -51368608 + L2 LINE L2 2479 2988 -325 309 311 8 0 chr15 34327173 34327292 -51368462 + (TA)n Simple_repeat Simple_repeat 1 120 0 754 259 85 49 chr15 34327293 34327598 -51368156 + L2 LINE L2 2997 3312 -1 1084 179 0 0 chr15 34327794 34327962 -51367792 - AluJb SINE Alu -13 299 132 1080 187 34 14 chr15 34328500 34328709 -51367045 + AluJo SINE Alu 87 299 -13 1668 181 25 16 chr15 34329235 34329550 -51366204 - 7SLRNA srpRNA srpRNA -2 318 1 435 257 86 0 chr15 34330083 34330188 -51365566 + MER82 DNA MER2_type 540 653 0 638 279 84 37 chr15 34330285 34330583 -51365171 + L2 LINE L2 1465 1776 -1538 23 33 0 0 chr15 34330731 34330761 -51364993 + AT_rich Low_complexity Low_complexity 1 30 0 235 325 113 0 chr15 34330887 34331081 -51364673 - L1MC4a LINE L1 -1731 6077 5862 270 0 0 0 chr15 34331104 34331134 -51364620 + (TG)n Simple_repeat Simple_repeat 2 31 0 2429 167 71 29 chr15 34331175 34331284 -51364470 + LTR64 LTR ERVK 3 106 -407 2143 130 0 0 chr15 34331284 34331591 -51364163 - AluSx SINE Alu -5 307 1 2429 167 71 29 chr15 34331591 34331971 -51363783 + LTR64 LTR ERVK 106 513 0 1950 158 7 0 chr15 34332539 34332837 -51362917 - AluJb SINE Alu -9 303 4 2003 106 33 0 chr15 34333420 34333718 -51362036 + AluSx SINE Alu 1 307 0 415 162 247 19 chr15 34333753 34333907 -51361847 - MER53 DNA DNA 0 189 1 2643 201 36 4 chr15 34334426 34334981 -51360773 + MER90 LTR ERV1 1 614 0 2434 151 34 80 chr15 34335014 34335491 -51360263 - LTR32 LTR ERVL 0 471 17 194 281 18 0 chr15 34336702 34336759 -51358995 + MIR3 SINE MIR 147 204 -4 266 208 135 10 chr15 34336882 34336978 -51358776 + L1ME4a LINE L1 5392 5499 -622 494 238 133 95 chr15 34336998 34337236 -51358518 + L1ME4a LINE L1 5551 5779 -342 684 221 41 17 chr15 34337236 34337408 -51358346 - MER5B DNA MER1_type -1 177 2 494 238 133 95 chr15 34337408 34337511 -51358243 + L1ME4a LINE L1 5779 5912 -209 3041 117 19 0 chr15 34337511 34337937 -51357817 + MER57B LTR ERV1 1 434 0 494 238 133 95 chr15 34337937 34337994 -51357760 + L1ME4a LINE L1 5912 5965 -156 2020 139 180 14 chr15 34338220 34338587 -51357167 - MSTA LTR MaLR 0 428 1 813 199 7 0 chr15 34338874 34339010 -51356744 + AluJo SINE Alu 120 256 -56 342 0 0 0 chr15 34339045 34339083 -51356671 + (TG)n Simple_repeat Simple_repeat 2 39 0 1771 153 7 33 chr15 34339579 34339886 -51355868 - AluJb SINE Alu -12 300 2 352 234 188 16 chr15 34340460 34340588 -51355166 - MIR SINE MIR -32 230 81 1576 159 4 19 chr15 34341050 34341308 -51354446 + AluJo SINE Alu 44 297 -15 268 279 0 0 chr15 34342079 34342140 -51353614 + HAL1 LINE L1 258 318 -2189 237 128 0 0 chr15 34342140 34342187 -51353567 + (TG)n Simple_repeat Simple_repeat 2 48 0 2560 147 10 76 chr15 34342188 34342677 -51353077 + LTR32 LTR ERVL 15 471 0 309 287 69 0 chr15 34342699 34342800 -51352954 + HAL1 LINE L1 341 448 -2059 4330 135 13 5 chr15 34343010 34343638 -51352116 + MER51A LTR ERV1 1 633 -1 727 246 135 30 chr15 34343711 34344073 -51351681 + HAL1 LINE L1 2097 2496 -11 395 183 0 0 chr15 34345315 34345386 -51350368 - MSTD LTR MaLR 0 396 326 11202 111 17 7 chr15 34345442 34347059 -51348695 - Tigger1 DNA MER2_type -32 2386 754 2372 92 3 3 chr15 34348542 34348846 -51346908 + AluSc SINE Alu 1 304 -5 277 134 15 15 chr15 34348916 34348983 -51346771 + (TG)n Simple_repeat Simple_repeat 2 68 0 273 282 59 29 chr15 34350019 34350189 -51345565 + LTR33A LTR ERVL 9 183 -340 438 234 193 0 chr15 34350242 34350413 -51345341 + LTR33A LTR ERVL 317 520 -3 2085 111 14 0 chr15 34350440 34350728 -51345026 - AluSx SINE Alu -20 292 1 717 277 31 71 chr15 34351281 34351635 -51344119 - MER102b DNA MER1_type 0 341 2 284 295 19 29 chr15 34351723 34351828 -51343926 - MARNA DNA Mariner -170 416 313 1060 200 0 0 chr15 34352758 34352933 -51342821 + FAM SINE Alu 1 175 0 2169 146 18 15 chr15 34352958 34353294 -51342460 + MER1B DNA MER1_type 1 337 -2 2473 94 3 0 chr15 34353398 34353707 -51342047 - AluSx SINE Alu -2 310 1 2590 52 0 3 chr15 34354114 34354420 -51341334 - AluY SINE Alu -6 305 1 535 122 14 0 chr15 34354561 34354635 -51341119 - MER1B DNA MER1_type 0 329 255 1775 120 3 35 chr15 34354665 34354948 -51340806 - MER1B DNA MER1_type -65 274 1 759 279 56 89 chr15 34355061 34355439 -51340315 + MLT1H LTR MaLR 14 439 -110 329 275 0 12 chr15 34355461 34355541 -51340213 - MLT1H LTR MaLR -393 156 78 981 245 158 44 chr15 34355588 34356040 -51339714 - MLT1H1 LTR MaLR -8 541 1 371 274 74 122 chr15 34356063 34356399 -51339355 - MLT1H1-int LTR MaLR -24 1347 1028 272 347 53 12 chr15 34356945 34357153 -51338601 - MLT1H1-int LTR MaLR -834 537 314 2266 57 14 10 chr15 34357213 34357509 -51338245 + AluY SINE Alu 1 297 -14 1839 148 0 10 chr15 34357621 34357919 -51337835 - AluSx SINE Alu -17 295 1 213 121 0 0 chr15 34357936 34357969 -51337785 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 556 250 55 47 chr15 34358105 34358341 -51337413 + L1MC5 LINE L1 7713 7950 -11 4358 178 10 48 chr15 34359509 34360256 -51335498 + L1MC1 LINE L1 24 737 -5689 1951 125 13 26 chr15 34360256 34360559 -51335195 - AluY SINE Alu -10 301 3 4358 178 10 48 chr15 34360559 34360643 -51335111 + L1MC1 LINE L1 737 823 -5603 909 174 174 5 chr15 34360643 34360827 -51334927 + AluJb SINE Alu 84 298 -14 2212 126 0 0 chr15 34360827 34361120 -51334634 + AluSx SINE Alu 1 293 -19 6405 195 45 57 chr15 34361120 34361966 -51333788 + L1MC1 LINE L1 820 1675 -4751 2358 103 0 0 chr15 34361966 34362276 -51333478 + AluSg SINE Alu 1 310 0 6405 195 45 57 chr15 34362276 34362686 -51333068 + L1MC1 LINE L1 1675 2088 -4338 1403 203 105 0 chr15 34362686 34362952 -51332802 + AluJb SINE Alu 1 294 -18 6405 195 45 57 chr15 34362952 34364060 -51331694 + L1MC1 LINE L1 2088 3208 -3218 1549 167 62 11 chr15 34364060 34364335 -51331419 + AluJo SINE Alu 1 289 -23 6405 195 45 57 chr15 34364335 34364651 -51331103 + L1MC1 LINE L1 3208 3526 -2900 747 174 8 15 chr15 34364651 34364783 -51330971 - FLAM_C SINE Alu -2 131 1 6405 195 45 57 chr15 34364783 34365704 -51330050 + L1MC1 LINE L1 3526 4383 -2043 15478 26 2 0 chr15 34365708 34368308 -51327446 - L1PA5 LINE L1 -2 6152 3546 6983 54 13 0 chr15 34368308 34369659 -51326095 - L1P2 LINE L1 -368 5786 4424 3133 223 22 87 chr15 34369659 34370894 -51324860 + L1MC1 LINE L1 4377 5531 -895 2843 7 0 0 chr15 34371205 34371512 -51324242 - AluYa5 SINE Alu -4 307 1 237 179 0 18 chr15 34372092 34372148 -51323606 + A-rich Low_complexity Low_complexity 4 58 0 2042 122 0 7 chr15 34372639 34372955 -51322799 - AluSx SINE Alu 0 314 1 6226 123 10 35 chr15 34373667 34373758 -51321996 + L1MC1 LINE L1 5535 5627 -986 1641 172 31 17 chr15 34373758 34374048 -51321706 + AluJb SINE Alu 1 294 -18 6226 123 10 35 chr15 34374048 34375058 -51320696 + L1MC1 LINE L1 5627 6609 -4 2219 100 7 23 chr15 34375101 34375410 -51320344 - AluSx SINE Alu -8 304 1 249 108 0 0 chr15 34375471 34375508 -51320246 + (A)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 34376218 34376242 -51319512 + AT_rich Low_complexity Low_complexity 1 24 0 192 345 129 9 chr15 34376669 34376785 -51318969 - L2 LINE L2 0 3272 3143 183 342 26 35 chr15 34376908 34377022 -51318732 - L2 LINE L2 -327 2986 2874 229 299 0 26 chr15 34377104 34377181 -51318573 + MLT1K LTR MaLR 40 114 -474 558 252 103 79 chr15 34377271 34378037 -51317717 - L1MC5 LINE L1 -36 7925 7179 952 151 27 0 chr15 34378037 34378222 -51317532 - L1MA4 LINE L1 -6 6294 6105 1815 181 0 13 chr15 34378222 34378526 -51317228 - AluJo SINE Alu -12 300 1 558 252 103 79 chr15 34378526 34378608 -51317146 - L1MC5 LINE L1 -781 7180 7055 306 310 62 8 chr15 34378682 34378811 -51316943 - L1ME3A LINE L1 -28 6142 6007 2220 103 0 0 chr15 34378942 34379234 -51316520 - AluY SINE Alu -19 292 1 347 178 136 17 chr15 34379243 34379361 -51316393 - L1MC5 LINE L1 -440 7521 7390 1871 110 4 8 chr15 34379373 34379653 -51316101 - AluSx SINE Alu 0 306 28 1041 171 47 85 chr15 34379653 34380024 -51315730 - L1MC5 LINE L1 -827 7134 6797 999 195 54 36 chr15 34380454 34380613 -51315141 - L1MC5 LINE L1 -2272 5536 5368 2209 167 39 112 chr15 34380613 34381211 -51314543 - MER41C LTR ERV1 0 554 1 999 195 54 36 chr15 34381211 34381328 -51314426 - L1MC5 LINE L1 -2440 5368 5255 234 320 51 0 chr15 34381490 34381646 -51314108 - L1MC5 LINE L1 -1458 4688 4525 2193 119 0 0 chr15 34381704 34381999 -51313755 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 34382023 34382045 -51313709 + AT_rich Low_complexity Low_complexity 1 22 0 4576 69 0 0 chr15 34382104 34382684 -51313070 + L1PA5 LINE L1 5574 6153 -1 2105 101 49 0 chr15 34382979 34383265 -51312489 - AluSq SINE Alu -13 300 1 275 383 81 11 chr15 34383339 34383624 -51312130 - L2 LINE L2 -1001 2313 2009 1280 179 81 54 chr15 34384350 34384507 -51311247 - MER2 DNA MER2_type 0 344 193 2228 115 0 0 chr15 34384507 34384803 -51310951 - AluSx SINE Alu -16 296 1 1280 179 81 54 chr15 34384803 34384980 -51310774 - MER2 DNA MER2_type -151 193 1 299 293 104 37 chr15 34385471 34385635 -51310119 - L3 LINE CR1 -876 701 527 208 234 79 22 chr15 34385624 34385706 -51310048 - MIR SINE MIR -135 73 7 * 1429 229 93 20 chr15 34385936 34386378 -51309376 - MLT1J LTR MaLR -37 474 1 182 304 209 0 chr15 34386896 34387011 -51308743 + MIR SINE MIR 3 141 -121 26 50 0 0 chr15 34387298 34387338 -51308416 + AT_rich Low_complexity Low_complexity 1 40 0 576 263 127 15 chr15 34387930 34388189 -51307565 + MLT1L LTR MaLR 316 603 -12 192 77 0 0 chr15 34393505 34393531 -51302223 + (TTGGGG)n Simple_repeat Simple_repeat 6 31 0 2029 120 36 17 chr15 34396142 34396443 -51299311 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 34397774 34397799 -51297955 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 42 30 chr15 34398305 34398471 -51297283 + MARNA DNA Mariner 327 494 -92 540 283 131 11 chr15 34398753 34398944 -51296810 + MIR SINE MIR 1 214 -48 22 35 0 0 chr15 34399644 34399673 -51296081 + AT_rich Low_complexity Low_complexity 1 29 0 206 266 16 0 chr15 34399685 34399749 -51296005 + (TA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 34401801 34401825 -51293929 + (T)n Simple_repeat Simple_repeat 1 24 0 239 250 135 29 chr15 34402764 34402868 -51292886 - MIR3 SINE MIR -6 202 88 316 352 184 31 chr15 34403775 34404096 -51291658 + L2 LINE L2 2913 3282 -31 1084 207 59 31 chr15 34404394 34404837 -51290917 - LTR56 LTR ERV1 -2 441 9 187 389 80 23 chr15 34405183 34405358 -51290396 - L3 LINE CR1 -13 1564 1380 2474 61 0 0 chr15 34405703 34405997 -51289757 + AluY SINE Alu 17 310 -1 491 216 52 0 chr15 34406249 34406365 -51289389 - MIR SINE MIR -34 228 107 364 95 48 0 chr15 34406434 34406497 -51289257 + L1P LINE L1 3261 3326 -2820 7629 100 17 2 chr15 34406498 34407691 -51288063 + L1P LINE L1 3259 4469 -1677 5846 67 18 43 chr15 34407692 34408758 -51286996 + SVA Other Other 2 866 -520 1204 100 26 112 chr15 34408789 34409209 -51286545 + SVA Other Other 483 866 -520 189 359 0 0 chr15 34409313 34409352 -51286402 + T-rich Low_complexity Low_complexity 1 39 0 3615 174 24 1 chr15 34409468 34410179 -51285575 - L1 LINE L1 -1022 5124 4393 414 39 0 0 chr15 34410179 34410231 -51285523 + (TG)n Simple_repeat Simple_repeat 1 52 0 3615 174 24 1 chr15 34410231 34410278 -51285476 - L1 LINE L1 -1753 4393 4349 22 0 0 0 chr15 34410680 34410702 -51285052 + AT_rich Low_complexity Low_complexity 1 22 0 6560 81 16 8 chr15 34410758 34412024 -51283730 - L1PA10 LINE L1 0 6168 4899 213 39 0 0 chr15 34412031 34412057 -51283697 + (T)n Simple_repeat Simple_repeat 1 26 0 * 321 261 126 17 chr15 34412056 34412175 -51283579 + MER112 DNA MER1_type 129 260 0 338 266 25 13 chr15 34412216 34412295 -51283459 + MIR3 SINE MIR 81 160 -48 2251 110 0 0 chr15 34412301 34412602 -51283152 - AluSg SINE Alu -8 302 2 429 221 14 131 chr15 34412605 34412750 -51283004 - MER5B DNA MER1_type -1 177 50 6553 73 8 29 chr15 34412763 34413688 -51282066 - SVA Other Other 0 1386 482 21 36 0 0 chr15 34413733 34413761 -51281993 + GC_rich Low_complexity Low_complexity 1 28 0 615 266 164 20 chr15 34414451 34414695 -51281059 + L1M4 LINE L1 105 383 -6159 6297 223 102 22 chr15 34414704 34415764 -51279990 + L1M4 LINE L1 2564 3538 -3106 2510 48 3 0 chr15 34415764 34416059 -51279695 - AluY SINE Alu -15 296 1 6297 223 102 22 chr15 34416059 34417278 -51278476 + L1M4 LINE L1 3538 5034 -1610 1998 138 3 3 chr15 34417310 34417606 -51278148 + AluSx SINE Alu 3 298 -14 613 285 133 51 chr15 34418482 34419075 -51276679 + L1ME4a LINE L1 3204 3845 -2799 767 289 53 31 chr15 34419076 34419486 -51276268 + L1ME4a LINE L1 3914 4335 -2309 1697 153 70 0 chr15 34419486 34419773 -51275981 - AluJo SINE Alu -5 307 1 767 289 53 31 chr15 34419773 34419895 -51275859 + L1ME4a LINE L1 4335 4453 -2191 305 312 52 48 chr15 34420390 34420621 -51275133 + L1ME4a LINE L1 5094 5325 -1319 28 0 0 0 chr15 34420774 34420802 -51274952 + AT_rich Low_complexity Low_complexity 1 28 0 330 289 111 26 chr15 34421145 34421335 -51274419 + L1ME4a LINE L1 6392 6597 -22 681 133 70 28 chr15 34421617 34421726 -51274028 + L1MA5A LINE L1 5468 5586 -711 2398 77 0 0 chr15 34421726 34422023 -51273731 - AluY SINE Alu -13 298 2 681 133 70 28 chr15 34422023 34422056 -51273698 + L1MA5A LINE L1 5586 5616 -681 * 20301 128 35 29 chr15 34422039 34425441 -51270313 + L1MA3 LINE L1 11 3431 -4134 7470 140 20 11 chr15 34425436 34426358 -51269396 + L1MA3 LINE L1 5332 6244 -1480 * 2215 125 0 0 chr15 34426358 34426670 -51269084 - AluSx SINE Alu 0 312 1 7470 140 20 11 chr15 34426670 34428114 -51267640 + L1MA3 LINE L1 6244 7719 -5 207 0 0 0 chr15 34428127 34428150 -51267604 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 3330 140 58 3 chr15 34428151 34428737 -51267017 + L1MA5A LINE L1 5610 6227 -70 1031 281 13 50 chr15 34428976 34429440 -51266314 - L1ME3A LINE L1 -4 6166 5741 498 221 8 8 chr15 34429451 34429573 -51266181 - L1ME3A LINE L1 -731 5439 5318 282 284 12 12 chr15 34429869 34429950 -51265804 + MIR3 SINE MIR 97 177 -31 2325 79 0 16 chr15 34430205 34430508 -51265246 - AluY SINE Alu -13 298 1 545 221 24 0 chr15 34430686 34430813 -51264941 - L1MB5 LINE L1 -140 6034 5905 2109 110 3 7 chr15 34430863 34431164 -51264590 + AluSx SINE Alu 10 309 -3 24 0 0 0 chr15 34431450 34431474 -51264280 + AT_rich Low_complexity Low_complexity 1 24 0 1994 136 3 23 chr15 34431684 34432043 -51263711 - AluSx SINE Alu 0 353 1 42515 35 25 1 chr15 34432533 34438543 -51257211 - L1PA2 LINE L1 0 6155 1 1080 173 41 25 chr15 34439063 34439187 -51256567 + AluJb SINE Alu 86 216 -97 183 80 0 0 chr15 34439187 34439212 -51256542 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1080 173 41 25 chr15 34439212 34439312 -51256442 + AluJb SINE Alu 216 313 0 299 170 150 40 chr15 34439314 34439414 -51256340 - MIR3 SINE MIR -31 177 67 210 71 0 0 chr15 34439571 34439599 -51256155 + (TA)n Simple_repeat Simple_repeat 2 29 0 356 260 83 0 chr15 34439607 34439703 -51256051 + L2 LINE L2 3169 3272 0 194 204 37 37 chr15 34440535 34440589 -51255165 - L3 LINE CR1 -9 1568 1515 230 136 23 0 chr15 34441202 34441246 -51254508 + (TA)n Simple_repeat Simple_repeat 2 46 0 225 179 0 0 chr15 34441249 34441305 -51254449 - L1MC4 LINE L1 -1339 6703 6648 1308 164 47 60 chr15 34444007 34444306 -51251448 - AluJo SINE Alu -8 304 10 1676 145 151 0 chr15 34445165 34445489 -51250265 + L1MB5 LINE L1 5802 6174 0 2282 92 0 0 chr15 34445494 34445788 -51249966 - AluY SINE Alu -17 294 1 233 196 0 22 chr15 34446606 34446652 -51249102 + MLT1J1 LTR MaLR 66 110 -336 1689 70 0 9 chr15 34446715 34446928 -51248826 + AluY SINE Alu 1 211 -100 478 160 0 64 chr15 34447029 34447123 -51248631 + Charlie3 DNA MER1_type 2619 2706 -4 749 293 177 39 chr15 34447406 34448857 -51246897 - L1ME3A LINE L1 -231 5922 4196 2053 99 6 64 chr15 34448857 34449170 -51246584 - AluSp SINE Alu -16 297 3 749 293 177 39 chr15 34449170 34449456 -51246298 - L1ME3A LINE L1 -1957 4196 3951 561 252 259 31 chr15 34449468 34449754 -51246000 + L2 LINE L2 2928 3278 -35 270 290 28 52 chr15 34450314 34450562 -51245192 - L1ME3A LINE L1 -3594 2535 2294 340 358 100 52 chr15 34450703 34451161 -51244593 - L1ME3A LINE L1 -5397 722 243 263 242 16 16 chr15 34451428 34451556 -51244198 + (TA)n Simple_repeat Simple_repeat 1 128 0 1858 274 82 42 chr15 34451875 34452045 -51243709 + L1ME3 LINE L1 6 168 -5914 1887 117 4 4 chr15 34452045 34452311 -51243443 - AluSx SINE Alu -13 299 34 1858 274 82 42 chr15 34452311 34453391 -51242363 + L1ME3 LINE L1 168 1203 -4879 341 257 238 0 chr15 34453437 34453643 -51242111 + L1ME3 LINE L1 4775 5029 -1051 2128 95 49 0 chr15 34453663 34453948 -51241806 - AluSx SINE Alu -9 303 5 1308 184 43 16 chr15 34453974 34454229 -51241525 + AluJo SINE Alu 37 298 -14 2028 228 83 21 chr15 34454232 34455049 -51240705 + L1ME3 LINE L1 5077 5951 -145 872 221 112 93 chr15 34455063 34455430 -51240324 + LTR16A LTR ERVL 18 391 -59 401 244 22 33 chr15 34455430 34455520 -51240234 + MER5A DNA MER1_type 3 91 -98 517 221 137 65 chr15 34455520 34455827 -51239927 + HAL1 LINE L1 748 1076 -1431 266 186 167 29 chr15 34455836 34455938 -51239816 + LTR33 LTR ERVL 4 119 -402 21 71 0 0 chr15 34456097 34456139 -51239615 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr15 34459441 34459480 -51236274 + AT_rich Low_complexity Low_complexity 1 39 0 2999 174 55 17 chr15 34459602 34460244 -51235510 + L1MB5 LINE L1 5497 6162 -12 286 292 108 26 chr15 34460449 34460610 -51235144 - MER20B DNA MER1_type -4 215 45 259 119 2 134 chr15 34461369 34461436 -51234318 + MLT1C LTR MaLR 6 67 -307 673 153 146 0 chr15 34461442 34461520 -51234234 + MLT1C LTR MaLR 309 374 -93 207 0 0 0 chr15 34461520 34461543 -51234211 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 673 153 146 0 chr15 34461543 34461601 -51234153 + MLT1C LTR MaLR 374 465 -2 564 298 120 18 chr15 34461619 34462313 -51233441 - L1ME LINE L1 -399 5771 5007 209 299 65 0 chr15 34462415 34462492 -51233262 + L2 LINE L2 3186 3267 -5 743 168 122 10 chr15 34463253 34463450 -51232304 + L1MC5 LINE L1 7250 7468 -493 481 196 135 14 chr15 34463542 34463690 -51232064 + L1MC5 LINE L1 7747 7912 -49 847 144 8 0 chr15 34463713 34463845 -51231909 + FLAM_C SINE Alu 1 133 0 30820 102 29 62 chr15 34464653 34470990 -51224764 + L1PA7 LINE L1 39 6151 -3 24 53 0 0 chr15 34471483 34471521 -51224233 + AT_rich Low_complexity Low_complexity 1 38 0 526 301 99 37 chr15 34471649 34472065 -51223689 - L1MC/D LINE L1 -2005 5803 5355 964 214 0 5 chr15 34472065 34472252 -51223502 - MER5A DNA MER1_type -1 188 3 526 301 99 37 chr15 34472252 34472290 -51223464 - L1MC/D LINE L1 -2453 5355 5321 633 328 10 0 chr15 34472317 34472628 -51223126 - L1MC/D LINE L1 -881 5265 4952 2291 82 7 0 chr15 34472804 34473095 -51222659 - AluSx SINE Alu -19 293 1 359 322 50 8 chr15 34473389 34473510 -51222244 + MIR SINE MIR 2 127 -135 504 127 0 38 chr15 34473720 34473799 -51221955 - AluJ/FRAM SINE Alu -21 291 216 1170 179 30 5 chr15 34473845 34474046 -51221708 + AluJb SINE Alu 89 294 -18 2397 176 4 26 chr15 34474066 34474527 -51221227 - L1MA7 LINE L1 -152 6139 5689 23 54 0 0 chr15 34478241 34478278 -51217476 + AT_rich Low_complexity Low_complexity 1 37 0 252 271 133 60 chr15 34478735 34478901 -51216853 - L2 LINE L2 -111 3202 3025 665 285 83 32 chr15 34479243 34479496 -51216258 - Charlie8 DNA MER1_type -2141 276 11 1994 133 13 32 chr15 34480145 34480460 -51215294 - MER1B DNA MER1_type 0 339 31 1706 157 25 4 chr15 34481138 34481412 -51214342 - AluJo SINE Alu -32 280 1 632 187 107 20 chr15 34481971 34482121 -51213633 - FRAM SINE Alu -15 161 1 1509 146 4 48 chr15 34482274 34482542 -51213212 + AluJo SINE Alu 40 295 -17 683 268 78 17 chr15 34483257 34483488 -51212266 + MIR SINE MIR 5 249 -13 283 261 176 48 chr15 34483582 34483770 -51211984 - L2 LINE L2 -8 3305 3094 308 265 86 101 chr15 34483873 34484280 -51211474 + MLT1J LTR MaLR 109 509 -2 331 309 47 3 chr15 34484280 34484431 -51211323 - L2 LINE L2 -225 3047 2892 358 316 163 5 chr15 34484697 34484906 -51210848 - MIR SINE MIR -19 243 2 222 37 0 0 chr15 34484914 34484941 -51210813 + (T)n Simple_repeat Simple_repeat 1 27 0 302 304 0 13 chr15 34485493 34485572 -51210182 - L2 LINE L2 -203 3069 2992 816 165 69 69 chr15 34485599 34485817 -51209937 - MER20 DNA MER1_type -1 218 1 1091 185 9 24 chr15 34485825 34486036 -51209718 - MER3 DNA MER1_type 0 209 2 399 349 203 8 chr15 34486093 34486477 -51209277 - L2 LINE L2 -455 2859 2401 1169 241 84 40 chr15 34486529 34486779 -51208975 + MLT1D LTR MaLR 85 361 -144 219 36 0 0 chr15 34486779 34486807 -51208947 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1169 241 84 40 chr15 34486807 34486959 -51208795 + MLT1D LTR MaLR 361 505 0 872 313 112 59 chr15 34486975 34488018 -51207736 - L2 LINE L2 -941 2373 1276 401 332 92 7 chr15 34488073 34488344 -51207410 + L1MEc LINE L1 35 328 -6068 331 272 13 58 chr15 34488552 34488715 -51207039 + L1MEc LINE L1 726 878 -5518 1832 135 3 43 chr15 34488715 34489018 -51206736 + AluSq SINE Alu 1 291 -22 331 272 13 58 chr15 34489018 34489078 -51206676 + L1MEc LINE L1 878 939 -5457 2236 94 0 0 chr15 34489226 34489503 -51206251 + AluSq SINE Alu 15 291 -22 284 232 0 50 chr15 34489503 34489602 -51206152 + L1MEc LINE L1 1018 1111 -5285 2005 126 0 26 chr15 34489676 34489978 -51205776 + AluSc SINE Alu 1 294 -15 2493 231 125 18 chr15 34490004 34491015 -51204739 + L1M4 LINE L1 3951 5069 -1077 240 218 99 10 chr15 34491055 34491156 -51204598 + L1M4 LINE L1 44 153 -6389 718 299 64 59 chr15 34491346 34491921 -51203833 + L1M4 LINE L1 1440 2017 -4629 883 307 67 50 chr15 34491921 34492715 -51203039 + L2 LINE L2 2458 3269 -44 328 330 55 0 chr15 34492944 34493035 -51202719 + L2 LINE L2 3171 3266 -6 234 316 103 69 chr15 34493108 34493282 -51202472 + L2 LINE L2 3088 3267 -5 287 277 0 0 chr15 34493290 34493355 -51202399 + MIR SINE MIR 117 181 -81 405 0 0 0 chr15 34493386 34493431 -51202323 + (CA)n Simple_repeat Simple_repeat 2 46 0 323 135 0 0 chr15 34545015 34545067 -51150687 - MLT1D LTR MaLR -360 145 94 21 71 0 0 chr15 34545670 34545712 -51150042 + AT_rich Low_complexity Low_complexity 1 42 0 183 301 157 24 chr15 34546455 34546538 -51149216 + L2 LINE L2 2224 2317 -997 614 154 0 0 chr15 34546945 34547049 -51148705 - LTR40a LTR ERVL -16 503 400 4761 141 24 18 chr15 34547068 34547947 -51147807 - L1MA8 LINE L1 -2 6289 5406 2577 270 31 28 chr15 34547988 34549436 -51146318 - L1M2 LINE L1 -4167 3001 1535 1623 184 3 20 chr15 34550132 34550426 -51145328 - AluJb SINE Alu -22 290 2 305 370 37 15 chr15 34550470 34550605 -51145149 - L1M2 LINE L1 -5991 1107 970 346 300 75 17 chr15 34550608 34550728 -51145026 - LTR40a LTR ERVL -108 411 285 1703 97 79 7 chr15 34551104 34551383 -51144371 - L1MA8 LINE L1 -5 6286 5988 583 345 56 22 chr15 34551387 34552290 -51143464 + HERVL LTR ERVL 4320 5287 -367 1205 223 41 74 chr15 34552298 34552715 -51143039 + LTR16A1 LTR ERVL 55 457 0 1600 188 0 7 chr15 34552725 34553007 -51142747 + AluJo SINE Alu 1 280 -32 213 159 0 0 chr15 34553043 34553087 -51142667 + A-rich Low_complexity Low_complexity 1 44 0 1187 235 99 71 chr15 34553131 34553668 -51142086 + MER77 LTR ERV1 52 603 -2 431 265 127 17 chr15 34554823 34555004 -51140750 + MIR SINE MIR 62 262 0 189 121 0 0 chr15 34556489 34556522 -51139232 + (T)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr15 34556695 34556718 -51139036 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2031 122 31 0 chr15 34557189 34557477 -51138277 - AluSx SINE Alu -15 297 1 180 359 28 14 chr15 34557507 34557652 -51138102 + L2 LINE L2 3167 3313 0 254 370 98 16 chr15 34558255 34558501 -51137253 + L2 LINE L2 1713 1978 -1336 18534 162 73 53 chr15 34558626 34560358 -51135396 + L1MA3 LINE L1 24 1721 -6003 528 16 0 0 chr15 34560358 34560419 -51135335 + (GA)n Simple_repeat Simple_repeat 2 62 0 18534 162 73 53 chr15 34560419 34561880 -51133874 + L1MA3 LINE L1 1721 3152 -4572 1679 186 27 0 chr15 34561880 34561993 -51133761 + AluJo SINE Alu 3 111 -201 378 0 0 0 chr15 34561993 34562035 -51133719 + (CA)n Simple_repeat Simple_repeat 2 43 0 1679 186 27 0 chr15 34562035 34562217 -51133537 + AluJo SINE Alu 111 306 -6 18534 162 73 53 chr15 34562217 34564420 -51131334 + L1MA3 LINE L1 3152 5311 -2413 1428 153 0 5 chr15 34564420 34564636 -51131118 - AluJo SINE Alu -37 275 61 18534 162 73 53 chr15 34564636 34566574 -51129180 + L1MA3 LINE L1 5311 7724 0 183 256 0 0 chr15 34567195 34567234 -51128520 - MIR SINE MIR -6 256 218 4618 168 45 10 chr15 34567237 34568841 -51126913 - L1MB7 LINE L1 -5 6179 4530 1811 215 55 25 chr15 34568837 34569367 -51126387 - L1MB7 LINE L1 -2099 4047 3502 * 279 289 74 0 chr15 34569514 34569649 -51126105 + L1M4 LINE L1 2272 2416 -3730 710 207 88 72 chr15 34569691 34570025 -51125729 + HsTC2 DNA Tc2 11 1677 -221 1093 246 51 10 chr15 34570033 34570398 -51125356 - L1ME1 LINE L1 -4 6145 5549 * 2029 210 105 88 chr15 34570392 34571403 -51124351 - L1ME1 LINE L1 -1164 4965 3938 298 305 35 30 chr15 34571527 34571730 -51124024 - L1ME1 LINE L1 -4485 1644 1441 869 280 96 47 chr15 34572341 34573158 -51122596 - L1ME1 LINE L1 -4837 1473 573 722 180 54 14 chr15 34573512 34573758 -51121996 - L1MC2 LINE L1 -3 7764 7529 2247 120 27 27 chr15 34573758 34574133 -51121621 + THE1C LTR MaLR 1 375 0 722 180 54 14 chr15 34574133 34574256 -51121498 - L1MC2 LINE L1 -238 7529 6110 2018 147 48 44 chr15 34574266 34574721 -51121033 - L1MB4 LINE L1 -1 6179 5723 3282 242 56 1 chr15 34574736 34575649 -51120105 - L1M4 LINE L1 -1904 4242 3280 1506 266 55 28 chr15 34575661 34576131 -51119623 + MER74B LTR ERVL 66 548 -74 969 247 101 21 chr15 34576180 34576654 -51119100 - L1M4 LINE L1 -2865 3281 2770 1545 188 92 62 chr15 34576655 34577103 -51118651 + MLT1C LTR MaLR 2 462 -5 1688 239 52 4 chr15 34577103 34577581 -51118173 - L1M4 LINE L1 -3368 2778 2278 2781 165 37 78 chr15 34577617 34578343 -51117411 - L1MB8 LINE L1 -2 6245 5550 650 110 0 0 chr15 34578344 34578435 -51117319 - AluSx SINE Alu -16 293 203 871 75 0 0 chr15 34578437 34578544 -51117210 - AluSx SINE Alu -205 107 1 1831 178 53 63 chr15 34578545 34578729 -51117025 - L1MB8 LINE L1 -692 5555 5371 1652 155 6 65 chr15 34578729 34579052 -51116702 - AluJo SINE Alu -3 309 6 1831 178 53 63 chr15 34579052 34579216 -51116538 - L1MB8 LINE L1 -876 5371 5207 2253 112 3 0 chr15 34579216 34579528 -51116226 - AluSp SINE Alu 0 313 1 1831 178 53 63 chr15 34579528 34579867 -51115887 - L1MB8 LINE L1 -1040 5207 4873 702 294 104 5 chr15 34579879 34580100 -51115654 - MIR SINE MIR -15 247 5 336 306 102 29 chr15 34580793 34580999 -51114755 - L1MB8 LINE L1 -2434 3781 3561 2359 135 54 92 chr15 34581018 34581445 -51114309 - MER67A LTR ERV1 -29 514 109 2241 125 0 0 chr15 34581445 34581756 -51113998 + AluSq SINE Alu 1 311 -2 2359 135 54 92 chr15 34581756 34581862 -51113892 - MER67A LTR ERV1 -434 109 1 42911 32 21 2 chr15 34582439 34588473 -51107281 - L1PA2 LINE L1 -1 6154 1 4216 229 58 46 chr15 34588453 34590183 -51105571 - L1MB8 LINE L1 -2612 3603 1877 * 1064 189 0 11 chr15 34591565 34591771 -51103983 - MLT1A2 LTR MaLR 0 390 188 218 116 23 0 chr15 34591776 34591819 -51103935 + GA-rich Low_complexity Low_complexity 2 45 0 277 164 27 41 chr15 34591865 34591938 -51103816 - MLT1A2 LTR MaLR -222 168 97 390 220 127 0 chr15 34591997 34592115 -51103639 + MER94 DNA DNA 1 133 -1 582 269 14 33 chr15 34593165 34593377 -51102377 + L1ME1 LINE L1 5941 6148 -18 559 324 108 8 chr15 34593386 34593706 -51102048 - L2 LINE L2 -317 2996 2633 438 339 33 6 chr15 34593886 34594069 -51101685 - L2 LINE L2 -2050 1264 1077 824 158 0 6 chr15 34594934 34595092 -51100662 + GA-rich Low_complexity Low_complexity 3 159 0 312 253 127 40 chr15 34596454 34596604 -51099150 - MIR3 SINE MIR -6 202 40 441 298 75 63 chr15 34597374 34597626 -51098128 - L3 LINE CR1 -87 1490 1236 32 75 0 0 chr15 34597692 34597759 -51097995 + AT_rich Low_complexity Low_complexity 1 67 0 656 298 59 4 chr15 34597821 34598059 -51097695 - LTR16C LTR ERVL 0 491 241 907 83 8 0 chr15 34598220 34598341 -51097413 + L1PB1 LINE L1 6029 6150 -1 259 235 184 28 chr15 34598359 34598614 -51097140 - L1ME4a LINE L1 -121 6000 5706 21030 157 47 8 chr15 34598721 34603060 -51092694 + L1MA3 LINE L1 9 4520 -3045 7678 18 1 0 chr15 34603033 34603925 -51091829 + L1PA2 LINE L1 6680 7572 -2 * 11895 144 22 6 chr15 34603919 34607097 -51088657 + L1MA3 LINE L1 4492 7724 0 229 150 25 0 chr15 34607486 34607526 -51088228 - LTR16A LTR ERVL 0 450 410 1149 195 43 102 chr15 34607526 34607900 -51087854 + MLT1A1 LTR MaLR 1 352 -13 1105 270 73 29 chr15 34607906 34608287 -51087467 - LTR16A LTR ERVL -35 415 18 868 335 32 36 chr15 34608469 34608691 -51087063 - ERVL LTR ERVL -414 5350 5129 3083 111 150 0 chr15 34608691 34609243 -51086511 + LTR24C LTR ERV1 1 635 0 868 335 32 36 chr15 34609243 34609518 -51086236 - ERVL LTR ERVL -635 5129 4855 389 283 41 21 chr15 34609654 34609799 -51085955 - ERVL LTR ERVL -868 4617 4470 1859 318 104 28 chr15 34609872 34609929 -51085825 - ERVL LTR ERVL -2081 2915 2864 2111 119 0 7 chr15 34609929 34610222 -51085532 + AluSq SINE Alu 1 291 -22 1859 318 104 28 chr15 34610222 34610397 -51085357 - ERVL LTR ERVL -2132 2864 2704 2432 93 0 0 chr15 34610397 34610709 -51085045 + AluSx SINE Alu 1 312 0 1859 318 104 28 chr15 34610709 34610952 -51084802 - ERVL LTR ERVL -2292 2704 2481 1815 173 65 6 chr15 34610952 34611293 -51084461 + MLT1A1 LTR MaLR 4 364 -1 1859 318 104 28 chr15 34611293 34611736 -51084018 - ERVL LTR ERVL -2515 2481 1925 1041 317 89 39 chr15 34611775 34612394 -51083360 - ERVL LTR ERVL -3886 1110 461 323 222 56 24 chr15 34612816 34612942 -51082812 - LTR16A1 LTR ERVL 0 457 328 22 35 0 0 chr15 34612982 34613011 -51082743 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 34613072 34613093 -51082661 + AT_rich Low_complexity Low_complexity 1 21 0 601 217 70 0 chr15 34613495 34613638 -51082116 - MIR SINE MIR -32 230 78 1411 239 42 21 chr15 34614438 34614964 -51080790 + L1M4 LINE L1 2880 3416 -2730 4800 144 20 69 chr15 34614969 34615954 -51079800 + L1MB8 LINE L1 5183 6148 -30 208 286 0 16 chr15 34616270 34616333 -51079421 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 402 115 0 0 chr15 34616335 34616396 -51079358 + (TA)n Simple_repeat Simple_repeat 1 61 0 718 162 0 8 chr15 34616768 34616885 -51078869 - FLAM_A SINE Alu -17 116 1 3538 259 18 37 chr15 34617993 34619277 -51076477 + L1M4 LINE L1 4103 5362 -784 1032 193 19 5 chr15 34619286 34619499 -51076255 + L1MD1 LINE L1 6008 6223 -19 1132 269 82 50 chr15 34619678 34620335 -51075419 - L1MDa LINE L1 -4515 1565 888 2011 249 95 18 chr15 34620350 34620969 -51074785 - L1MDa LINE L1 -5307 763 97 239 296 0 16 chr15 34620976 34621101 -51074653 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 270 197 105 13 chr15 34621112 34621188 -51074566 - L1MDa LINE L1 -5982 88 6 379 321 66 96 chr15 34621200 34621502 -51074252 + L2 LINE L2 2969 3261 -11 2054 120 0 27 chr15 34623549 34623849 -51071905 - AluSx SINE Alu -20 292 1 21 0 0 0 chr15 34624050 34624071 -51071683 + AT_rich Low_complexity Low_complexity 1 21 0 249 312 152 60 chr15 34626348 34626697 -51069057 + L2 LINE L2 2553 2933 -381 364 281 129 6 chr15 34626733 34626911 -51068843 + L2 LINE L2 3039 3238 -75 267 289 164 41 chr15 34627878 34628543 -51067211 - L1MEc LINE L1 -1548 4834 4088 1098 303 119 39 chr15 34628556 34629418 -51066336 - L1MEc LINE L1 -2360 4022 3092 892 171 7 0 chr15 34629475 34629621 -51066133 - AluJb SINE Alu -32 280 134 1535 139 93 19 chr15 34629621 34629879 -51065875 - AluJb SINE Alu -15 297 21 230 289 59 13 chr15 34629897 34630049 -51065705 - L1MEc LINE L1 -3338 3044 2886 327 255 78 89 chr15 34630285 34630556 -51065198 - L1MEc LINE L1 -3928 2456 2189 308 336 34 0 chr15 34630728 34630847 -51064907 - L1MEc LINE L1 -4733 1830 1708 369 302 93 63 chr15 34631049 34631119 -51064635 - L1MEc LINE L1 -4900 1472 1406 1922 124 31 3 chr15 34631119 34631410 -51064344 - AluSx SINE Alu -11 301 3 369 302 93 63 chr15 34631410 34632189 -51063565 - L1MEc LINE L1 -4966 1406 598 233 335 66 16 chr15 34632229 34632411 -51063343 - L1MEc LINE L1 -5919 453 263 225 175 0 0 chr15 34633907 34633947 -51061807 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 47 82 0 0 chr15 34634298 34634408 -51061346 + AT_rich Low_complexity Low_complexity 1 110 0 5763 131 0 0 chr15 34634671 34635989 -51059765 - L1MA2 LINE L1 0 6304 4945 4312 31 0 0 chr15 34635989 34636496 -51059258 + L1PA3 LINE L1 5645 6152 -3 20907 158 39 20 chr15 34636505 34639048 -51056706 - L1M1 LINE L1 -630 7093 4599 1831 171 10 3 chr15 34639048 34639357 -51056397 + AluJb SINE Alu 1 311 -1 20907 158 39 20 chr15 34639357 34643748 -51052006 - L1M1 LINE L1 -3124 4599 16 189 254 131 54 chr15 34644397 34644527 -51051227 - MIR SINE MIR 0 262 123 1503 201 23 23 chr15 34645188 34645531 -51050223 - L1M4 LINE L1 -1062 5084 4742 2249 233 51 8 chr15 34646183 34646715 -51049039 + L1ME1 LINE L1 5612 6166 0 210 299 126 0 chr15 34646717 34646804 -51048950 - L2 LINE L2 -19 3253 3156 705 222 58 1 chr15 34647955 34648129 -51047625 - MER58B DNA MER1_type -2 339 3 383 294 52 44 chr15 34648209 34648345 -51047409 - L2 LINE L2 0 3272 3136 21 36 0 0 chr15 34650337 34650365 -51045389 + AT_rich Low_complexity Low_complexity 1 28 0 1566 71 44 4 chr15 34650535 34650761 -51044993 + L1MA1 LINE L1 6068 6302 0 25 0 0 0 chr15 34651381 34651406 -51044348 + AT_rich Low_complexity Low_complexity 1 25 0 465 209 55 66 chr15 34651781 34651963 -51043791 + L1MC5 LINE L1 7752 7931 -30 355 320 0 8 chr15 34652352 34652443 -51043311 + MIR3 SINE MIR 85 176 -32 2698 100 51 5 chr15 34652443 34652852 -51042902 - MSTA LTR MaLR 0 428 1 355 320 0 8 chr15 34652852 34652882 -51042872 + MIR3 SINE MIR 176 205 -3 315 272 33 0 chr15 34653974 34654066 -51041688 + HsTC2 DNA Tc2 3 97 -1801 438 313 68 6 chr15 34654068 34654231 -51041523 - L1MEd LINE L1 -5472 647 475 298 203 116 0 chr15 34654335 34654404 -51041350 + HsTC2 DNA Tc2 1822 1898 0 4194 159 52 25 chr15 34655239 34656296 -51039458 - L1MB8 LINE L1 -1 6177 5091 967 241 38 8 chr15 34656576 34656841 -51038913 - L1ME1 LINE L1 -18 6148 5876 2042 148 77 0 chr15 34656869 34657207 -51038547 + THE1B LTR MaLR 1 364 0 4889 90 3 1 chr15 34657207 34657871 -51037883 + THE1B-int LTR MaLR 1 665 -915 364 102 0 0 chr15 34657852 34657911 -51037843 + THE1B-int LTR MaLR 1521 1579 -1 * 2228 114 84 0 chr15 34657911 34658245 -51037509 + THE1B LTR MaLR 3 364 0 339 176 14 27 chr15 34658267 34658341 -51037413 - L1MD1 LINE L1 -412 5830 5758 229 250 19 0 chr15 34658368 34658420 -51037334 + MER3 DNA MER1_type 36 88 -121 * 1073 167 115 45 chr15 34658387 34658674 -51037080 + MER33 DNA MER1_type 9 315 -9 1069 77 0 0 chr15 34659121 34659251 -51036503 + AluYb8 SINE Alu 1 130 -188 37485 86 10 11 chr15 34659261 34665413 -51030341 + L1PA6 LINE L1 11 6152 -2 1294 74 26 26 chr15 34665415 34665604 -51030150 + AluYa5 SINE Alu 120 308 -3 355 229 84 0 chr15 34665615 34665698 -51030056 - MIR SINE MIR -153 109 20 2954 236 71 56 chr15 34666218 34667567 -51028187 - L1ME1 LINE L1 -5 6161 4795 893 275 19 28 chr15 34667570 34667890 -51027864 - L1ME1 LINE L1 -2590 3556 3240 3355 273 143 37 chr15 34667946 34669186 -51026568 + L2 LINE L2 1283 2391 -922 2359 68 3 0 chr15 34669186 34669481 -51026273 + AluY SINE Alu 1 296 -15 3355 273 143 37 chr15 34669481 34669776 -51025978 + L2 LINE L2 2391 2653 -660 1702 186 17 3 chr15 34669776 34670067 -51025687 - AluJb SINE Alu -17 295 1 3355 273 143 37 chr15 34670067 34670367 -51025387 + L2 LINE L2 2653 3313 0 186 204 23 23 chr15 34670434 34670478 -51025276 - MIR3 SINE MIR -157 51 8 203 204 23 0 chr15 34670971 34671015 -51024739 - L2 LINE L2 -1893 1421 1377 255 321 92 101 chr15 34671491 34671927 -51023827 - L2 LINE L2 -5 3267 2836 180 0 0 0 chr15 34672444 34672464 -51023290 + (TG)n Simple_repeat Simple_repeat 2 21 0 224 290 14 29 chr15 34672926 34672995 -51022759 - L2 LINE L2 0 3313 3246 203 235 20 39 chr15 34673027 34673078 -51022676 + MIR SINE MIR 97 146 -62 965 139 14 0 chr15 34673093 34673237 -51022517 - MER5A DNA MER1_type 0 189 44 320 250 12 62 chr15 34673249 34673329 -51022425 + L2 LINE L2 3196 3271 -1 21 36 0 0 chr15 34673430 34673458 -51022296 + AT_rich Low_complexity Low_complexity 1 28 0 294 154 21 21 chr15 34673458 34673601 -51022153 + (TTAA)n Simple_repeat Simple_repeat 1 143 0 30 69 0 0 chr15 34673604 34673662 -51022092 + AT_rich Low_complexity Low_complexity 1 58 0 1464 148 34 10 chr15 34673662 34673960 -51021794 - L1MB2 LINE L1 -3 6168 5864 206 304 80 24 chr15 34673985 34674110 -51021644 + L3 LINE CR1 637 768 -809 16753 167 25 7 chr15 34674515 34678768 -51016986 - L1PA14 LINE L1 0 6161 1833 1400 84 0 0 chr15 34678768 34678946 -51016808 + AluY SINE Alu 128 305 -6 1004 229 120 27 chr15 34679167 34679542 -51016212 - L1MEc LINE L1 -1465 4750 4341 544 244 62 19 chr15 34679560 34679720 -51016034 - MER58C DNA MER1_type -6 209 43 3605 227 82 59 chr15 34679721 34680563 -51015191 - L1MEc LINE L1 -2178 4037 3143 2178 108 0 19 chr15 34680563 34680879 -51014875 - AluSg SINE Alu 0 310 1 3605 227 82 59 chr15 34680879 34681567 -51014187 - L1MEc LINE L1 -3072 3143 2472 766 156 0 88 chr15 34681599 34681759 -51013995 - MER46A DNA MER2_type -90 146 1 302 206 31 10 chr15 34681765 34681862 -51013892 - L1MEc LINE L1 -3793 2422 2324 4016 26 0 0 chr15 34681904 34682370 -51013384 - L1PA3 LINE L1 -167 5988 5523 1337 35 0 35 chr15 34682370 34682538 -51013216 + L1PA3 LINE L1 5987 6152 -3 845 219 204 3 chr15 34682553 34682910 -51012844 - L1MEc LINE L1 -4086 2310 1882 2416 151 40 11 chr15 34682919 34683395 -51012359 - L1MB2 LINE L1 -2 6169 5680 2105 247 64 31 chr15 34683421 34683792 -51011962 - L1M4 LINE L1 -3064 3318 2961 976 160 34 55 chr15 34683792 34684029 -51011725 - L1MB8 LINE L1 -13 6165 5934 2105 247 64 31 chr15 34684029 34684048 -51011706 - L1M4 LINE L1 -3421 2961 2944 1214 89 58 5 chr15 34684048 34684239 -51011515 - L1PB1 LINE L1 -1 6150 5950 2105 247 64 31 chr15 34684239 34684875 -51010879 - L1M4 LINE L1 -3438 2944 2251 3650 234 102 30 chr15 34684878 34686265 -51009489 - L1M4 LINE L1 -4259 2125 542 474 284 57 83 chr15 34686393 34686816 -51008938 - L1M3d LINE L1 -5479 412 1 219 36 0 0 chr15 34686869 34686897 -51008857 + (CA)n Simple_repeat Simple_repeat 2 29 0 290 213 0 0 chr15 34686963 34687024 -51008730 - L1MEc LINE L1 -4631 1765 1705 363 330 54 15 chr15 34687319 34687522 -51008232 - L1MEc LINE L1 -5772 433 223 22 35 0 0 chr15 34688384 34688413 -51007341 + AT_rich Low_complexity Low_complexity 1 29 0 1791 164 4 0 chr15 34690470 34690750 -51005004 - AluJb SINE Alu -31 281 1 1585 144 68 0 chr15 34691133 34691383 -51004371 + AluSx SINE Alu 1 267 -45 215 326 15 59 chr15 34691438 34691573 -51004181 - MIR SINE MIR -64 144 16 31 0 0 0 chr15 34691876 34691907 -51003847 + AT_rich Low_complexity Low_complexity 1 31 0 211 296 0 0 chr15 34692034 34692078 -51003676 - L2 LINE L2 -8 3305 3262 249 189 176 0 chr15 34692265 34692339 -51003415 + MLT1J LTR MaLR 419 505 -6 438 137 0 27 chr15 34692942 34693015 -51002739 - 5S rRNA rRNA -20 101 31 1664 39 0 43 chr15 34693453 34693683 -51002071 + L1PA8 LINE L1 5947 6166 -6 402 364 96 0 chr15 34693828 34694037 -51001717 + L2 LINE L2 2594 2822 -492 289 245 116 45 chr15 34694075 34694230 -51001524 + L2 LINE L2 3133 3298 -15 219 217 22 0 chr15 34694282 34694328 -51001426 + L2 LINE L2 3220 3266 -6 2921 231 73 41 chr15 34695290 34696315 -50999439 + L1MD1 LINE L1 2873 3930 -2216 * 21617 47 3 14 chr15 34696307 34699130 -50996624 + L1P LINE L1 2591 5381 -765 3242 201 61 74 chr15 34699128 34701006 -50994748 + L1MD1 LINE L1 4073 5937 -305 * 816 167 36 42 chr15 34701033 34701225 -50994529 - L1MB7 LINE L1 -326 5858 5668 2537 232 57 55 chr15 34701228 34701723 -50994031 - L1MDa LINE L1 -3090 3450 2951 5184 140 15 25 chr15 34701723 34701982 -50993772 + L1PA15 LINE L1 5056 5316 -849 2377 72 0 22 chr15 34701982 34702300 -50993454 + AluY SINE Alu 1 311 0 5184 140 15 25 chr15 34702300 34703159 -50992595 + L1PA15 LINE L1 5316 6165 0 2537 232 57 55 chr15 34703159 34703622 -50992132 - L1MDa LINE L1 -3589 2951 2490 26 30 0 0 chr15 34703788 34703821 -50991933 + AT_rich Low_complexity Low_complexity 1 33 0 249 281 35 0 chr15 34704207 34704264 -50991490 - L2 LINE L2 0 3272 3214 384 183 207 0 chr15 34704565 34704647 -50991107 - MIR SINE MIR -4 258 160 268 191 0 0 chr15 34705901 34705943 -50989811 - MIR SINE MIR -56 152 111 21 36 0 0 chr15 34706738 34706766 -50988988 + AT_rich Low_complexity Low_complexity 1 28 0 574 197 53 15 chr15 34707250 34707382 -50988372 - MER105 DNA DNA -41 163 27 1121 248 118 14 chr15 34707397 34707898 -50987856 - L1M4 LINE L1 -1328 5316 4764 585 189 30 15 chr15 34707898 34708030 -50987724 - L1MA10 LINE L1 -10 6324 6191 1460 238 61 16 chr15 34708048 34708493 -50987261 - L1ME2 LINE L1 -142 6022 5558 2868 134 41 6 chr15 34708495 34708980 -50986774 - L1PA16 LINE L1 -3 6163 5662 2135 124 0 3 chr15 34708999 34709305 -50986449 - AluSx SINE Alu -7 305 1 2005 293 126 23 chr15 34709306 34709573 -50986181 - L1M4 LINE L1 -1890 4754 4516 2837 3 0 0 chr15 34709573 34709884 -50985870 - AluYa5 SINE Alu 0 311 1 2005 293 126 23 chr15 34709884 34710787 -50984967 - L1M4 LINE L1 -2128 4516 3463 3813 208 66 10 chr15 34710814 34711717 -50984037 - L1MB4 LINE L1 0 6180 5231 424 250 91 40 chr15 34711882 34712058 -50983696 - L1M4 LINE L1 -6294 248 64 337 178 0 0 chr15 34712142 34712215 -50983539 - L1MB4 LINE L1 -3170 2976 2904 239 200 0 36 chr15 34712228 34712283 -50983471 + Tigger5 DNA MER2_type 28 80 -2243 272 167 0 0 chr15 34712340 34712382 -50983372 + Tigger5 DNA MER2_type 2282 2323 0 460 323 5 5 chr15 34712385 34712583 -50983171 - L1MB4 LINE L1 -3246 2900 2703 2596 168 51 38 chr15 34712692 34713080 -50982674 - MER68 LTR ERV1 0 562 163 2414 78 0 0 chr15 34713080 34713388 -50982366 - AluY SINE Alu -3 308 1 2596 168 51 38 chr15 34713388 34713552 -50982202 - MER68 LTR ERV1 -399 163 3 382 310 39 75 chr15 34714696 34714781 -50980973 - L1MEc LINE L1 -4759 1551 1465 1805 82 11 15 chr15 34714781 34715049 -50980705 - L1MA2 LINE L1 0 6304 6038 382 310 39 75 chr15 34715049 34715218 -50980536 - L1MEc LINE L1 -4845 1465 1306 290 281 53 61 chr15 34715233 34715461 -50980293 - L1MEc LINE L1 -4918 1201 976 281 135 77 0 chr15 34715477 34715529 -50980225 - L1ME3A LINE L1 -11 6159 6104 189 0 0 0 chr15 34715824 34715845 -50979909 + (A)n Simple_repeat Simple_repeat 1 21 0 545 313 156 18 chr15 34716170 34716496 -50979258 + L3 LINE CR1 917 1287 -290 245 352 65 19 chr15 34716575 34716683 -50979071 + L3 LINE CR1 1442 1554 -23 1159 247 36 62 chr15 34717268 34717884 -50977870 - L1MC5 LINE L1 -48 7913 7314 * 2711 158 46 23 chr15 34717845 34718114 -50977640 + L1MD2 LINE L1 5318 5579 -780 1666 164 35 11 chr15 34718114 34718401 -50977353 + AluJo SINE Alu 1 294 -18 2711 158 46 23 chr15 34718401 34718728 -50977026 + L1MD2 LINE L1 5579 5936 -423 591 138 28 0 chr15 34718748 34718857 -50976897 - L1MB7 LINE L1 -19 6165 6054 3402 150 29 24 chr15 34718865 34719491 -50976263 - L1MC1 LINE L1 -5 6328 5700 2291 145 12 19 chr15 34719638 34720058 -50975696 - L1MB7 LINE L1 -125 6059 5643 683 160 17 0 chr15 34720061 34720180 -50975574 + MLT1E3 LTR MaLR 504 624 0 381 155 36 12 chr15 34720182 34720266 -50975488 + L1MC4 LINE L1 7542 7627 -415 2235 113 3 22 chr15 34720286 34720604 -50975150 + AluSp SINE Alu 1 312 -1 252 0 0 0 chr15 34720604 34720632 -50975122 + (TA)n Simple_repeat Simple_repeat 2 29 0 1750 143 84 62 chr15 34720637 34721007 -50974747 - LTR24 LTR ERV1 -42 425 48 901 198 85 27 chr15 34721007 34721265 -50974489 + L1MD3 LINE L1 7713 7985 -10 595 247 47 12 chr15 34721269 34721439 -50974315 + L1MC4a LINE L1 6609 6784 -1024 1127 237 65 53 chr15 34721475 34721893 -50973861 - MLT2B1 LTR ERVL -88 432 10 488 199 86 59 chr15 34721898 34721975 -50973779 + L1MC4 LINE L1 6872 6945 -1097 2243 115 0 0 chr15 34721975 34722279 -50973475 + AluSx SINE Alu 1 304 -8 488 199 86 59 chr15 34722279 34722387 -50973367 + L1MC4 LINE L1 6945 7062 -980 732 216 0 55 chr15 34722576 34722757 -50972997 - FRAM SINE Alu 0 40 1 241 145 40 57 chr15 34722763 34722853 -50972901 + L1MC5 LINE L1 7097 7191 -770 227 280 50 50 chr15 34722899 34723395 -50972359 + L1MC4 LINE L1 7268 7758 -284 696 293 63 5 chr15 34723965 34724095 -50971659 - MIR SINE MIR -19 243 93 2329 90 3 0 chr15 34724095 34724394 -50971360 + AluSg SINE Alu 1 300 -10 696 293 63 5 chr15 34724394 34724485 -50971269 - MIR SINE MIR -169 93 9 354 194 148 56 chr15 34725012 34725120 -50970634 - MIR SINE MIR -95 167 50 225 65 0 0 chr15 34725173 34725204 -50970550 + (CCA)n Simple_repeat Simple_repeat 3 33 0 183 42 0 0 chr15 34726178 34726202 -50969552 + (C)n Simple_repeat Simple_repeat 1 24 0 364 242 67 0 chr15 34726548 34726668 -50969086 + L1MCa LINE L1 20 147 -6279 1094 139 49 67 chr15 34727256 34727489 -50968265 - L1MC2 LINE L1 -11 6333 6104 1862 136 68 0 chr15 34727489 34727769 -50967985 - AluSx SINE Alu -11 301 3 1094 139 49 67 chr15 34727769 34727802 -50967952 - L1MC2 LINE L1 -240 6104 6072 452 238 0 0 chr15 34727804 34727888 -50967866 + FRAM/FAM SINE Alu 1 84 -92 1631 148 3 16 chr15 34727888 34728191 -50967563 - L1MC2 LINE L1 -258 6086 5788 26 74 0 0 chr15 34728193 34728247 -50967507 + AT_rich Low_complexity Low_complexity 1 54 0 232 207 0 17 chr15 34729747 34729805 -50965949 + (TA)n Simple_repeat Simple_repeat 2 58 0 189 147 0 0 chr15 34730364 34730398 -50965356 + (GA)n Simple_repeat Simple_repeat 1 34 0 232 329 239 12 chr15 34730557 34730737 -50965017 - MIR SINE MIR -13 249 35 413 203 24 123 chr15 34730768 34730980 -50964774 - MER112 DNA MER1_type -62 198 8 273 57 0 0 chr15 34731880 34731915 -50963839 + (A)n Simple_repeat Simple_repeat 1 35 0 470 247 36 6 chr15 34732202 34732368 -50963386 - MER104 DNA Tc2 -4 176 6 268 303 0 10 chr15 34732596 34732695 -50963059 - LTR16B LTR ERVL 0 464 367 433 321 91 55 chr15 34732721 34733029 -50962725 - LTR16B LTR ERVL -145 319 1 463 264 18 9 chr15 34733615 34733725 -50962029 + MIR3 SINE MIR 87 197 -11 230 359 13 0 chr15 34733787 34733865 -50961889 - L3 LINE CR1 -1175 402 324 2189 94 30 3 chr15 34734362 34734659 -50961095 - AluSq SINE Alu -8 305 1 231 247 174 33 chr15 34735165 34735410 -50960344 - L1M4 LINE L1 -934 5212 4912 381 279 99 16 chr15 34735436 34735809 -50959945 - L1M4 LINE L1 -1365 4781 4378 704 326 80 10 chr15 34735860 34736274 -50959480 - LTR33 LTR ERVL -77 444 2 226 266 11 11 chr15 34736300 34736394 -50959360 - L1M4 LINE L1 -1795 4351 4258 7601 27 2 0 chr15 34736413 34737757 -50957997 - L1PA4 LINE L1 -3 6152 4809 326 292 169 6 chr15 34737777 34737955 -50957799 - L1M4 LINE L1 -1954 4192 3986 * 332 204 253 43 chr15 34737933 34738119 -50957635 - L1ME4a LINE L1 0 6121 5897 565 250 14 7 chr15 34738225 34738369 -50957385 - MLT1D LTR MaLR -42 463 319 521 251 76 53 chr15 34738634 34738897 -50956857 - L1MEd LINE L1 -5308 811 543 3903 179 49 19 chr15 34739218 34740028 -50955726 + L1MB3 LINE L1 4934 5718 -465 186 43 0 0 chr15 34740028 34740051 -50955703 + (CA)n Simple_repeat Simple_repeat 2 24 0 3903 179 49 19 chr15 34740051 34740268 -50955486 + L1MB3 LINE L1 5718 6005 -178 2093 76 0 28 chr15 34740268 34740624 -50955130 - AluY SINE Alu 0 348 1 3903 179 49 19 chr15 34740624 34740760 -50954994 + L1MB3 LINE L1 6005 6135 -48 2384 64 0 0 chr15 34740766 34741072 -50954682 + AluY SINE Alu 1 306 0 21 0 0 0 chr15 34741072 34741093 -50954661 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr15 34741851 34741887 -50953867 + AT_rich Low_complexity Low_complexity 1 36 0 269 95 95 0 chr15 34741954 34741996 -50953758 + L2 LINE L2 3268 3313 0 24 0 0 0 chr15 34742260 34742284 -50953470 + AT_rich Low_complexity Low_complexity 1 24 0 2224 115 0 0 chr15 34742429 34742733 -50953021 - AluY SINE Alu -7 304 1 2641 25 0 25 chr15 34742753 34743072 -50952682 - AluY SINE Alu 0 311 1 459 299 83 34 chr15 34743367 34743571 -50952183 - MIR SINE MIR 0 262 49 2376 76 0 7 chr15 34744482 34744785 -50950969 + AluY SINE Alu 1 301 -10 412 155 0 14 chr15 34744963 34745034 -50950720 + LTR16A LTR ERVL 52 121 -329 611 281 45 0 chr15 34745075 34745248 -50950506 + LTR16A LTR ERVL 204 384 -66 864 169 19 0 chr15 34745248 34745402 -50950352 + THE1C LTR MaLR 1 157 -218 418 243 47 12 chr15 34745403 34745572 -50950182 + (ACATG)n Simple_repeat Simple_repeat 1 175 0 360 143 182 0 chr15 34745572 34745649 -50950105 + THE1C LTR MaLR 136 226 -149 6325 113 53 8 chr15 34745660 34746660 -50949094 + THE1C-int LTR MaLR 1 1045 -535 1097 86 11 11 chr15 34746658 34746833 -50948921 + THE1C-int LTR MaLR 1405 1579 -1 * 2546 131 3 3 chr15 34746835 34747209 -50948545 + THE1C LTR MaLR 2 375 0 285 229 0 0 chr15 34747210 34747271 -50948483 + LTR16A LTR ERVL 381 441 -9 183 42 0 0 chr15 34747616 34747640 -50948114 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1501 286 141 27 chr15 34748127 34749151 -50946603 - L2 LINE L2 -4 3309 2110 510 259 29 11 chr15 34749152 34749326 -50946428 - MER5B DNA MER1_type -1 177 1 629 190 25 16 chr15 34749345 34749466 -50946288 + FRAM SINE Alu 32 153 -23 535 294 109 25 chr15 34749467 34749625 -50946129 - L2 LINE L2 -1208 2106 1963 207 0 0 0 chr15 34749625 34749648 -50946106 + (GA)n Simple_repeat Simple_repeat 1 23 0 535 294 109 25 chr15 34749648 34749764 -50945990 - L2 LINE L2 -1351 1963 1809 398 302 94 50 chr15 34749917 34750076 -50945678 - L2 LINE L2 -3 3269 3104 236 352 0 19 chr15 34750153 34750261 -50945493 + L2 LINE L2 2617 2722 -592 1794 158 3 14 chr15 34750597 34750882 -50944872 + AluJo SINE Alu 1 282 -30 1754 155 0 4 chr15 34750900 34751164 -50944590 + AluJo SINE Alu 40 302 -10 211 354 23 86 chr15 34751255 34751557 -50944197 + L2 LINE L2 2964 3246 -26 766 219 104 81 chr15 34754069 34754426 -50941328 - MLT1A1 LTR MaLR 0 365 1 324 309 63 78 chr15 34754561 34754830 -50940924 + L2 LINE L2 3004 3268 -4 191 293 52 0 chr15 34756048 34756106 -50939648 + L2 LINE L2 3204 3264 -8 1500 168 8 37 chr15 34759892 34760160 -50935594 + AluJo SINE Alu 37 296 -16 186 224 0 0 chr15 34760598 34760647 -50935107 + (CA)n Simple_repeat Simple_repeat 2 50 0 4922 162 25 31 chr15 34760994 34761975 -50933779 + L1M3f LINE L1 1240 2215 -4350 10701 185 86 14 chr15 34761990 34764115 -50931639 + L1M3f LINE L1 2748 5210 -2355 665 232 8 0 chr15 34764115 34764240 -50931514 + FLAM_A SINE Alu 2 127 -6 10701 185 86 14 chr15 34764240 34765530 -50930224 + L1M3f LINE L1 5210 6407 -1158 7419 225 64 35 chr15 34765537 34765641 -50930113 + L1PA12 LINE L1 1 101 -7483 361 22 0 0 chr15 34765641 34765687 -50930067 - MADE1 DNA Mariner -34 46 1 7419 225 64 35 chr15 34765687 34767192 -50928562 + L1PA12 LINE L1 101 1562 -6022 1919 125 87 32 chr15 34767192 34767537 -50928217 - THE1B LTR MaLR 0 364 1 7419 225 64 35 chr15 34767537 34770165 -50925589 + L1PA12 LINE L1 1562 4159 -3425 27372 35 2 0 chr15 34770184 34774256 -50921498 - L1PA4 LINE L1 -4 6151 2073 1602 83 0 0 chr15 34774253 34774458 -50921296 + L1P LINE L1 1476 1680 -4466 * 734 103 0 9 chr15 34774444 34774551 -50921203 - L1P LINE L1 -4565 1581 1476 * 636 99 0 10 chr15 34774548 34774649 -50921105 + L1P LINE L1 2073 2172 -3974 * 285 320 137 23 chr15 34776565 34776740 -50919014 + MIR3 SINE MIR 6 200 -8 846 228 23 1 chr15 34777272 34777496 -50918258 - L1M LINE L1 -782 5364 5155 1506 175 4 8 chr15 34778421 34778689 -50917065 - AluJo SINE Alu -39 273 7 1399 157 51 8 chr15 34779101 34779356 -50916398 - AluJb SINE Alu -46 266 1 240 342 13 0 chr15 34779508 34779584 -50916170 - L2 LINE L2 -11 3302 3226 676 242 66 77 chr15 34779948 34780312 -50915442 + MLT1A2 LTR MaLR 2 361 -13 1963 130 3 13 chr15 34781029 34781337 -50914417 - AluSx SINE Alu -7 305 1 212 265 243 15 chr15 34781408 34781544 -50914210 - MIR SINE MIR -81 181 15 244 258 61 15 chr15 34781789 34781855 -50913899 - MIR SINE MIR -85 123 55 295 252 0 103 chr15 34782140 34782247 -50913507 + MIR SINE MIR 89 184 -78 407 329 110 0 chr15 34782357 34782503 -50913251 - MIR SINE MIR -57 205 44 397 295 53 27 chr15 34782528 34782768 -50912986 + MIR SINE MIR 12 256 -6 337 301 39 0 chr15 34783233 34783336 -50912418 + MIR SINE MIR 88 194 -68 219 69 0 0 chr15 34783933 34783962 -50911792 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2771 73 0 22 chr15 34784045 34784415 -50911339 + L1PA7 LINE L1 5792 6153 -1 370 276 88 0 chr15 34784494 34784664 -50911090 - MER5A DNA MER1_type 0 189 5 668 183 49 14 chr15 34787675 34787817 -50907937 + L1PA13 LINE L1 5995 6141 -22 275 234 43 29 chr15 34787816 34787987 -50907767 + L1PA13 LINE L1 6072 6141 -22 * 292 233 43 29 chr15 34788020 34788157 -50907597 + L1PA13 LINE L1 6072 6141 -22 292 237 40 40 chr15 34788143 34788361 -50907393 + L1PA13 LINE L1 6061 6141 -22 292 232 43 29 chr15 34788496 34788599 -50907155 + L1PA13 LINE L1 6072 6141 -22 273 221 17 43 chr15 34788585 34788684 -50907070 + L1PA13 LINE L1 6061 6141 -22 * 256 251 43 29 chr15 34788666 34788769 -50906985 + L1PA13 LINE L1 6072 6141 -22 * 425 125 62 25 chr15 34788777 34788857 -50906897 + L1PA13 LINE L1 6081 6163 0 2408 133 14 0 chr15 34789769 34790137 -50905617 - MER83C LTR ERV1 0 373 1 1566 94 5 9 chr15 34791066 34791278 -50904476 - THE1B LTR MaLR -153 211 1 2234 205 61 0 chr15 34791278 34791786 -50903968 + L1MB3 LINE L1 5645 6183 0 877 212 86 71 chr15 34794845 34795227 -50900527 - MLT1B LTR MaLR -2 388 1 304 200 55 0 chr15 34795549 34795659 -50900095 + (CACAG)n Simple_repeat Simple_repeat 4 119 0 624 193 6 17 chr15 34796547 34796728 -50899026 + (CAT)n Simple_repeat Simple_repeat 1 179 0 207 114 0 0 chr15 34796745 34796780 -50898974 + (CAT)n Simple_repeat Simple_repeat 2 36 0 659 197 6 0 chr15 34796827 34797005 -50898749 + (CAT)n Simple_repeat Simple_repeat 1 179 0 267 343 9 19 chr15 34797267 34797375 -50898379 + MIR SINE MIR 74 180 -82 324 355 20 13 chr15 34797392 34797544 -50898210 - MIR SINE MIR -108 154 2 318 316 17 0 chr15 34798180 34798297 -50897457 + L1ME LINE L1 5465 5583 -581 773 128 0 0 chr15 34798297 34798406 -50897348 + AluSq/x SINE Alu 2 110 -202 4044 214 56 17 chr15 34798508 34799230 -50896524 - L1 LINE L1 -1022 5124 4351 2210 84 0 14 chr15 34799230 34799527 -50896227 - AluY SINE Alu -18 293 1 4044 214 56 17 chr15 34799527 34799810 -50895944 - L1 LINE L1 -1795 4351 4080 23 33 0 0 chr15 34802316 34802346 -50893408 + AT_rich Low_complexity Low_complexity 1 30 0 3278 17 0 0 chr15 34802353 34802841 -50892913 - L1PA3 LINE L1 -657 5498 5011 4464 16 0 0 chr15 34802841 34803336 -50892418 + L1PA3 LINE L1 5506 6000 -155 190 29 88 0 chr15 34804087 34804121 -50891633 + T-rich Low_complexity Low_complexity 2 38 0 438 240 39 16 chr15 34805099 34805123 -50890631 - L1MC1 LINE L1 -6 6327 6305 3301 110 31 90 chr15 34805123 34805270 -50890484 - MER4A LTR ERV1 0 600 446 2201 75 0 0 chr15 34805270 34805575 -50890179 - AluY SINE Alu 0 307 3 3301 110 31 90 chr15 34805575 34806061 -50889693 - MER4A LTR ERV1 -154 446 3 438 240 39 16 chr15 34806061 34806165 -50889589 - L1MC1 LINE L1 -28 6305 6196 564 326 96 48 chr15 34806642 34807369 -50888385 + L2 LINE L2 649 1410 -1904 419 69 17 0 chr15 34807376 34807434 -50888320 + Alu SINE Alu 2 60 -258 270 284 0 34 chr15 34808297 34808385 -50887369 + L2 LINE L2 3185 3269 -3 419 210 10 0 chr15 34809100 34809200 -50886554 + GA-rich Low_complexity Low_complexity 1 101 0 1285 158 27 0 chr15 34809589 34809810 -50885944 + MER50 LTR ERV1 22 248 -486 * 1761 153 9 38 chr15 34809804 34810124 -50885630 + MER50 LTR ERV1 397 707 -27 1687 155 16 13 chr15 34810149 34810459 -50885295 - AluJb SINE Alu -1 311 1 1307 152 82 4 chr15 34810884 34811141 -50884613 + L1MA9 LINE L1 5802 6078 -234 341 315 13 13 chr15 34811165 34811314 -50884440 + (TA)n Simple_repeat Simple_repeat 1 149 0 650 240 135 45 chr15 34811314 34811506 -50884248 - MLT2B1 LTR ERVL -21 499 271 2464 161 37 37 chr15 34811506 34811967 -50883787 + LOR1b LTR ERV1 1 461 0 650 240 135 45 chr15 34811967 34812062 -50883692 - MLT2B1 LTR ERVL -249 271 186 246 250 65 46 chr15 34812474 34812582 -50883172 + MER5A DNA MER1_type 59 168 -21 19043 69 2 5 chr15 34813283 34816081 -50879673 - L1P2 LINE L1 -497 5657 2868 1731 67 5 5 chr15 34816181 34816405 -50879349 + L1PA6 LINE L1 5926 6149 -5 1107 251 28 57 chr15 34816444 34816831 -50878923 + LOR1b-int LTR ERV1 333 708 -4163 3701 208 61 48 chr15 34816918 34817850 -50877904 + L1PBa LINE L1 105 1048 -5815 9466 158 38 5 chr15 34817851 34820773 -50874981 + L1PBa LINE L1 1093 4258 -2604 539 69 0 0 chr15 34820904 34820976 -50874778 - L1P LINE L1 -4599 1547 1476 * 764 30 0 0 chr15 34820973 34821073 -50874681 + L1P LINE L1 2073 2172 -3974 14986 75 8 0 chr15 34821073 34823141 -50872613 - L1P LINE L1 -4061 2085 1 12058 167 8 9 chr15 34823140 34823604 -50872150 + L1P LINE L1 2714 3177 -2969 * 2309 94 7 7 chr15 34823604 34823913 -50871841 + AluY SINE Alu 1 309 -2 12058 167 8 9 chr15 34823913 34825765 -50869989 + L1P LINE L1 3177 5029 -1117 11794 187 17 76 chr15 34825762 34831083 -50864671 + L1P4 LINE L1 1222 6175 -694 * 240 311 15 22 chr15 34831078 34831213 -50864541 + L1ME LINE L1 4934 5067 -1079 * 419 305 37 13 chr15 34831400 34831724 -50864030 + L1ME LINE L1 5258 5583 -583 23 0 0 0 chr15 34833955 34833978 -50861776 + AT_rich Low_complexity Low_complexity 1 23 0 325 296 76 22 chr15 34834476 34834699 -50861055 - MARNA DNA Mariner -166 420 186 928 184 134 20 chr15 34835512 34835713 -50860041 + MER58A DNA MER1_type 1 224 0 285 356 110 7 chr15 34836117 34836263 -50859491 - MIR3 SINE MIR -11 197 37 379 275 100 10 chr15 34836305 34836505 -50859249 - LTR33 LTR ERVL 0 521 304 1495 207 12 18 chr15 34837007 34837345 -50858409 - MLT1E3 LTR MaLR 0 624 289 675 144 19 3 chr15 34837373 34837545 -50858209 - MLT1E1 LTR MaLR -424 230 5 21 0 0 0 chr15 34837643 34837664 -50858090 + AT_rich Low_complexity Low_complexity 1 21 0 229 318 0 0 chr15 34839482 34839545 -50856209 - MLT1J LTR MaLR -330 181 119 232 191 85 75 chr15 34839562 34839606 -50856148 - MLT1L LTR MaLR -518 97 55 1056 229 47 0 chr15 34839606 34839820 -50855934 - MER58A DNA MER1_type 0 224 1 232 191 85 75 chr15 34839820 34839869 -50855885 - MLT1L LTR MaLR -560 55 3 7112 111 67 7 chr15 34842113 34843274 -50852480 + Tigger3b DNA MER2_type 1 1231 0 239 394 86 27 chr15 34844235 34844358 -50851396 + L2 LINE L2 2843 2957 -315 1788 178 0 32 chr15 34844358 34844673 -50851081 + AluJb SINE Alu 1 305 -7 239 394 86 27 chr15 34844673 34844955 -50850799 + L2 LINE L2 2957 3272 0 259 268 98 41 chr15 34846344 34846467 -50849287 + MIR SINE MIR 62 191 -71 234 91 0 0 chr15 34847400 34847433 -50848321 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 8111 102 99 30 chr15 34847448 34848725 -50847029 + SVA Other Other 2 1366 -20 7454 31 0 13 chr15 34848885 34849090 -50846664 + L1PA4 LINE L1 5197 5403 -752 2428 24 0 17 chr15 34849090 34849377 -50846377 + AluY SINE Alu 28 309 -2 7454 31 0 13 chr15 34849377 34850139 -50845615 + L1PA4 LINE L1 5403 6152 -3 23 0 0 0 chr15 34850139 34850162 -50845592 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 34850267 34850307 -50845447 + (TA)n Simple_repeat Simple_repeat 2 41 0 5014 206 136 49 chr15 34851099 34852952 -50842802 - L1MCa LINE L1 -4394 2032 18 3065 210 76 40 chr15 34852947 34853042 -50842712 - L1M4 LINE L1 -745 5401 5311 * 2138 110 0 17 chr15 34853042 34853342 -50842412 - AluSx SINE Alu -15 297 3 3065 210 76 40 chr15 34853342 34854355 -50841399 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 34856281 34856436 -50839318 + MIR SINE MIR 38 221 -41 2265 115 0 0 chr15 34856436 34856741 -50839013 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 34856741 34856784 -50838970 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 34857263 34857286 -50838468 + (TA)n Simple_repeat Simple_repeat 2 24 0 1429 132 12 0 chr15 34858139 34858390 -50837364 - L1MA5A LINE L1 -3 6294 6041 485 314 144 0 chr15 34858497 34858691 -50837063 - MIR SINE MIR -11 251 30 866 178 0 0 chr15 34858937 34859100 -50836654 - L1ME1 LINE L1 -308 5858 5696 4325 165 38 14 chr15 34859103 34860134 -50835620 + L1MB2 LINE L1 5105 6164 -7 225 169 0 123 chr15 34860139 34860204 -50835550 + L1ME3A LINE L1 5962 6018 -152 382 307 74 52 chr15 34860862 34861093 -50834661 - MIR SINE MIR -6 256 21 203 171 0 0 chr15 34861956 34861991 -50833763 + MER5B DNA MER1_type 1 35 -143 469 174 0 11 chr15 34861998 34862090 -50833664 + MLT2B1 LTR ERVL 6 96 -424 10220 208 47 24 chr15 34862193 34865317 -50830437 - L1M3 LINE L1 -743 5403 2300 1660 163 38 20 chr15 34865318 34865662 -50830092 + MER65A LTR ERV1 1 350 -95 7973 119 4 46 chr15 34865664 34866476 -50829278 + HSMAR1 DNA Mariner 27 765 -522 2216 125 3 0 chr15 34866476 34866780 -50828974 - AluSq SINE Alu -8 305 1 7973 119 4 46 chr15 34866780 34867281 -50828473 + HSMAR1 DNA Mariner 765 1285 -2 418 125 12 25 chr15 34867281 34867361 -50828393 + MER65A LTR ERV1 365 443 -2 770 258 22 9 chr15 34867397 34867622 -50828132 + MER65A-int LTR ERV1 36 263 -4608 16624 127 16 20 chr15 34867635 34870466 -50825288 + L1P LINE L1 11 2830 -3316 294 238 32 95 chr15 35071203 35071329 -50624425 + MIR SINE MIR 24 141 -67 430 315 73 12 chr15 35071929 35072094 -50623660 + MIR SINE MIR 18 192 -70 266 349 142 9 chr15 35073971 35074183 -50621571 + MIR SINE MIR 22 261 -1 181 281 49 85 chr15 35075227 35075309 -50620445 + MIR SINE MIR 59 137 -125 28 0 0 0 chr15 35075350 35075378 -50620376 + AT_rich Low_complexity Low_complexity 1 28 0 417 244 61 8 chr15 35075956 35076087 -50619667 - L1ME4a LINE L1 -225 5896 5759 594 249 114 0 chr15 35076396 35076590 -50619164 - MIR SINE MIR -6 256 36 299 248 38 60 chr15 35077797 35077930 -50617824 - MIR SINE MIR -19 243 114 545 291 6 0 chr15 35079253 35079411 -50616343 + MIR SINE MIR 98 256 -6 208 291 0 0 chr15 35080151 35080206 -50615548 - L2 LINE L2 -4 3268 3214 220 213 106 0 chr15 35080806 35080853 -50614901 - L2 LINE L2 -5 3267 3216 229 277 10 69 chr15 35081156 35081257 -50614497 + MIR3 SINE MIR 84 178 -30 22 0 0 0 chr15 35082650 35082672 -50613082 + AT_rich Low_complexity Low_complexity 1 22 0 1398 141 34 46 chr15 35082706 35082969 -50612785 - L1MA6 LINE L1 -4 6296 6037 203 290 0 16 chr15 35084242 35084304 -50611450 - MIR3 SINE MIR -7 201 141 189 354 0 25 chr15 35084887 35084966 -50610788 + L2 LINE L2 2961 3037 -235 427 252 81 9 chr15 35085280 35085391 -50610363 + L2 LINE L2 3195 3313 0 48 72 0 0 chr15 35085425 35085522 -50610232 + AT_rich Low_complexity Low_complexity 1 97 0 21 0 0 0 chr15 35087934 35087955 -50607799 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 35089240 35089270 -50606484 + AT_rich Low_complexity Low_complexity 1 30 0 2141 122 3 7 chr15 35089833 35090137 -50605617 - AluSx SINE Alu -8 304 2 456 208 0 0 chr15 35091222 35091294 -50604460 - FLAM_A SINE Alu -70 72 1 382 315 123 8 chr15 35093373 35093503 -50602251 - MIR3 SINE MIR -19 189 45 2310 76 0 13 chr15 35093575 35093877 -50601877 - AluY SINE Alu -13 298 1 22 0 0 0 chr15 35094015 35094037 -50601717 + AT_rich Low_complexity Low_complexity 1 22 0 583 269 76 41 chr15 35094311 35094459 -50601295 + L1ME4a LINE L1 5793 5934 -187 324 0 0 0 chr15 35094459 35094495 -50601259 + (TG)n Simple_repeat Simple_repeat 1 36 0 583 269 76 41 chr15 35094495 35094662 -50601092 + L1ME4a LINE L1 5934 6119 -2 300 27 0 0 chr15 35094961 35094998 -50600756 + (CA)n Simple_repeat Simple_repeat 2 38 0 512 214 103 0 chr15 35095449 35095566 -50600188 - L2 LINE L2 0 3313 3185 242 297 44 11 chr15 35096282 35096373 -50599381 + MIR SINE MIR 35 128 -134 269 169 0 31 chr15 35097471 35097536 -50598218 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 2379 50 3 60 chr15 35097987 35098306 -50597448 + AluY SINE Alu 1 301 -10 248 263 40 26 chr15 35099315 35099391 -50596363 - L2 LINE L2 -3 3310 3234 188 301 164 28 chr15 35099500 35099713 -50596041 - L2 LINE L2 -213 3059 2818 2203 107 27 0 chr15 35100478 35100776 -50594978 + AluSx SINE Alu 1 306 -6 225 200 0 0 chr15 35101866 35101911 -50593843 + T-rich Low_complexity Low_complexity 1 45 0 588 124 0 11 chr15 35103481 35103570 -50592184 - MLT1A2 LTR MaLR 0 374 287 * 609 163 0 10 chr15 35103554 35103652 -50592102 - MLT1A2 LTR MaLR -277 97 1 484 259 98 23 chr15 35104371 35104545 -50591209 + MIR3 SINE MIR 21 207 -1 1948 208 24 10 chr15 35104602 35105015 -50590739 - L1MB8 LINE L1 -13 6165 5747 264 196 0 0 chr15 35105990 35106046 -50589708 + MER4-int LTR ERV1 1107 1162 -5436 231 167 0 0 chr15 35106070 35106112 -50589642 - L1MC4 LINE L1 -1339 6703 6662 286 301 44 26 chr15 35106671 35106784 -50588970 + L2 LINE L2 3143 3257 -15 203 161 0 0 chr15 35106897 35106928 -50588826 + polypyrimidine Low_complexity Low_complexity 2 32 0 195 273 0 0 chr15 35106946 35106990 -50588764 - L2 LINE L2 -36 3236 3193 202 317 0 0 chr15 35107410 35107470 -50588284 + MER91 DNA MER1_type 79 138 -2 266 303 140 57 chr15 35108493 35108757 -50586997 + L2 LINE L2 2677 2962 -352 520 267 8 0 chr15 35108816 35108936 -50586818 - L2 LINE L2 0 3272 3152 261 279 262 55 chr15 35108939 35109176 -50586578 + L2 LINE L2 2986 3271 -1 465 274 136 33 chr15 35109298 35109713 -50586041 - L1MEd LINE L1 -980 1510 954 230 309 10 21 chr15 35109730 35109747 -50586007 - L1MA10 LINE L1 -53 6281 6265 874 208 64 5 chr15 35109747 35109949 -50585805 - L1ME3 LINE L1 -60 6102 5889 452 289 65 68 chr15 35109961 35110283 -50585471 - L1MEd LINE L1 -5172 947 627 378 345 34 19 chr15 35110397 35110606 -50585148 - L1MEd LINE L1 -5664 455 244 271 276 0 26 chr15 35110766 35110842 -50584912 + MER5A DNA MER1_type 86 159 -30 2284 93 0 13 chr15 35110862 35111162 -50584592 + AluSg SINE Alu 1 296 -14 877 183 17 6 chr15 35114937 35115117 -50580637 - MER96B DNA MER1_type? -235 182 1 192 356 114 8 chr15 35115641 35115773 -50579981 - MIR3 SINE MIR -17 191 46 275 122 0 0 chr15 35117062 35117103 -50578651 - MADE1 DNA Mariner 0 80 40 210 271 161 45 chr15 35117103 35117258 -50578496 + MIR SINE MIR 78 250 -12 661 297 46 5 chr15 35118209 35118404 -50577350 - MIR SINE MIR -39 223 21 1992 80 0 19 chr15 35118632 35118895 -50576859 - AluSg SINE Alu -52 258 1 342 247 49 0 chr15 35119366 35119447 -50576307 + MIR SINE MIR 68 152 -56 502 257 7 21 chr15 35119522 35119666 -50576088 - MLT1K LTR MaLR -1 587 446 370 271 69 64 chr15 35120225 35120413 -50575341 - MIR SINE MIR -27 235 47 254 359 127 25 chr15 35121863 35122100 -50573654 - MIR SINE MIR 0 262 2 22 35 0 0 chr15 35122295 35122324 -50573430 + AT_rich Low_complexity Low_complexity 1 29 0 1473 164 65 34 chr15 35122405 35122697 -50573057 - AluJb SINE Alu 0 302 2 288 206 85 109 chr15 35123109 35123274 -50572480 - L1ME3 LINE L1 -1955 5853 5693 2485 85 0 0 chr15 35123290 35123597 -50572157 - AluY SINE Alu -4 307 1 38 39 0 0 chr15 35124503 35124555 -50571199 + AT_rich Low_complexity Low_complexity 1 52 0 1118 164 45 41 chr15 35124758 35124978 -50570776 + MER58A DNA MER1_type 2 222 -2 2318 120 0 0 chr15 35126505 35126814 -50568940 - AluSx SINE Alu -3 309 1 272 267 0 17 chr15 35126819 35126879 -50568875 + MER5A DNA MER1_type 129 187 -2 1760 169 16 22 chr15 35128156 35128470 -50567284 - AluJo SINE Alu 0 312 1 336 306 40 16 chr15 35128491 35128615 -50567139 - L2 LINE L2 -5 3308 3182 238 348 0 25 chr15 35128775 35128893 -50566861 - L2 LINE L2 -213 3059 2945 2179 121 10 0 chr15 35129614 35129919 -50565835 - AluSq SINE Alu -5 308 1 2129 221 46 39 chr15 35129934 35130501 -50565253 - L1MD3 LINE L1 -21 7974 7404 265 139 23 0 chr15 35130510 35130553 -50565201 - L1MD3 LINE L1 -740 7255 7212 383 301 66 36 chr15 35130843 35131009 -50564745 + MIR3 SINE MIR 36 206 -2 198 0 0 0 chr15 35131470 35131492 -50564262 + (T)n Simple_repeat Simple_repeat 1 22 0 2261 114 0 16 chr15 35132048 35132356 -50563398 - AluSx SINE Alu -9 303 1 481 274 58 98 chr15 35132377 35132654 -50563100 - L2 LINE L2 -27 3245 2980 2094 122 3 25 chr15 35132999 35133318 -50562436 - AluSx SINE Alu 0 312 1 2185 173 124 15 chr15 35133525 35133993 -50561761 - Charlie1b DNA MER1_type -4 519 1 217 257 0 43 chr15 35135127 35135181 -50560573 + CT-rich Low_complexity Low_complexity 3 55 -14 2075 127 3 34 chr15 35135181 35135503 -50560251 - AluSx SINE Alu 0 312 1 217 257 0 43 chr15 35135503 35135518 -50560236 + CT-rich Low_complexity Low_complexity 55 69 0 213 39 0 0 chr15 35135520 35135546 -50560208 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 399 254 154 30 chr15 35136353 35136522 -50559232 - MIR SINE MIR 0 262 73 807 164 0 57 chr15 35136560 35136700 -50559054 + FLAM_C SINE Alu 2 133 0 328 320 25 25 chr15 35137317 35137439 -50558315 + MIR3 SINE MIR 14 135 -73 1518 199 0 33 chr15 35137442 35137748 -50558006 - AluJb SINE Alu -16 296 1 695 289 101 9 chr15 35138167 35138395 -50557359 + MIR SINE MIR 8 256 -6 182 294 129 73 chr15 35138764 35139050 -50556704 - L2 LINE L2 -21 3251 2950 220 224 86 17 chr15 35139170 35139228 -50556526 + MER5A DNA MER1_type 44 105 -84 1000 142 76 46 chr15 35139303 35139500 -50556254 + AluJb SINE Alu 81 283 -29 749 283 87 4 chr15 35139848 35140078 -50555676 + MIR SINE MIR 4 252 -10 23 0 0 0 chr15 35140108 35140131 -50555623 + AT_rich Low_complexity Low_complexity 1 23 0 690 186 161 0 chr15 35141678 35141839 -50553915 + MER5A DNA MER1_type 3 189 0 307 357 78 13 chr15 35142080 35142234 -50553520 + MIR SINE MIR 20 183 -79 484 316 34 39 chr15 35142475 35142559 -50553195 - MIR SINE MIR -20 242 159 1977 195 95 50 chr15 35142559 35143042 -50552712 + MLT1D LTR MaLR 1 505 0 484 316 34 39 chr15 35143042 35143191 -50552563 - MIR SINE MIR -103 159 10 336 294 54 0 chr15 35144330 35144422 -50551332 - MIR SINE MIR -82 126 30 1796 120 3 95 chr15 35144614 35144930 -50550824 + AluSq SINE Alu 1 287 -26 240 111 0 0 chr15 35144931 35144967 -50550787 + (CA)n Simple_repeat Simple_repeat 2 37 0 353 155 31 10 chr15 35144974 35145071 -50550683 + (TA)n Simple_repeat Simple_repeat 1 99 0 351 0 0 0 chr15 35145650 35145689 -50550065 + (A)n Simple_repeat Simple_repeat 1 39 0 223 345 27 18 chr15 35147275 35147385 -50548369 - MIR3 SINE MIR -31 177 67 416 238 175 25 chr15 35147835 35147995 -50547759 + MER117 DNA MER1_type 10 193 -4 22 0 0 0 chr15 35148099 35148121 -50547633 + AT_rich Low_complexity Low_complexity 1 22 0 417 293 121 6 chr15 35150893 35151067 -50544687 + L2 LINE L2 2565 2758 -556 261 0 0 0 chr15 35151223 35151252 -50544502 + (CA)n Simple_repeat Simple_repeat 1 29 0 360 64 0 0 chr15 35152526 35152573 -50543181 + (TG)n Simple_repeat Simple_repeat 2 48 0 432 214 89 42 chr15 35153590 35153758 -50541996 + MIR SINE MIR 60 235 -27 604 280 135 25 chr15 35154177 35154502 -50541252 - L1MC/D LINE L1 -2108 5700 5340 1061 256 137 28 chr15 35154507 35154902 -50540852 + LTR16A LTR ERVL 3 440 -10 519 311 106 43 chr15 35154919 35156535 -50539219 - L1MC/D LINE L1 -818 5328 3611 237 306 41 20 chr15 35158541 35158639 -50537115 - L2 LINE L2 -190 3082 2983 339 214 56 48 chr15 35159743 35159861 -50535893 - MER103 DNA DNA -2 164 43 2447 48 3 0 chr15 35159861 35160155 -50535599 - AluY SINE Alu -16 295 1 36 0 0 0 chr15 35160162 35160198 -50535556 + AT_rich Low_complexity Low_complexity 1 36 0 759 22 0 0 chr15 35161913 35162002 -50533752 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 180 0 0 0 chr15 35163420 35163440 -50532314 + (T)n Simple_repeat Simple_repeat 1 20 0 1687 152 0 79 chr15 35163655 35163985 -50531769 - AluSx SINE Alu 0 312 9 278 267 223 44 chr15 35164472 35164678 -50531076 - MIR SINE MIR 0 262 20 207 139 0 0 chr15 35166974 35167010 -50528744 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 281 289 82 22 chr15 35167126 35167265 -50528489 - MIR3 SINE MIR -93 115 3 243 236 0 0 chr15 35167345 35167400 -50528354 + MIR SINE MIR 183 237 -25 431 299 65 15 chr15 35168279 35168480 -50527274 - MIR SINE MIR -3 259 49 196 273 91 26 chr15 35168635 35168712 -50527042 + MIR3 SINE MIR 109 190 -18 1745 167 10 7 chr15 35169410 35169710 -50526044 - L1MB5 LINE L1 -17 6157 5857 22 35 0 0 chr15 35169982 35170011 -50525743 + AT_rich Low_complexity Low_complexity 1 29 0 303 146 0 0 chr15 35170778 35170833 -50524921 + (CA)n Simple_repeat Simple_repeat 2 56 0 272 294 0 0 chr15 35172250 35172318 -50523436 + MIR SINE MIR 87 154 -108 1256 155 79 49 chr15 35172508 35172812 -50522942 + L1MA9 LINE L1 5996 6308 -4 318 262 35 48 chr15 35174150 35174295 -50521459 - MIR3 SINE MIR -5 203 61 651 182 0 91 chr15 35175275 35175451 -50520303 + MER5B DNA MER1_type 3 162 -16 273 239 64 55 chr15 35176309 35176418 -50519336 + MIR SINE MIR 39 148 -114 439 290 32 0 chr15 35176504 35176628 -50519126 + MIR3 SINE MIR 56 183 -25 377 269 23 31 chr15 35177725 35177855 -50517899 + MIR SINE MIR 60 188 -74 2409 87 0 7 chr15 35177869 35178178 -50517576 + AluSx SINE Alu 1 307 -5 2349 89 0 7 chr15 35178300 35178602 -50517152 - AluY SINE Alu -11 300 1 2429 80 0 7 chr15 35179138 35179440 -50516314 - AluY SINE Alu -11 300 1 201 229 0 0 chr15 35179540 35179588 -50516166 - MER5B DNA MER1_type -80 98 51 505 256 8 0 chr15 35179590 35179707 -50516047 - L1ME3 LINE L1 -3 6159 6042 305 143 107 0 chr15 35179709 35179765 -50515989 + MER5B DNA MER1_type 115 176 -2 182 289 39 0 chr15 35179974 35180026 -50515728 + L2 LINE L2 3128 3181 -91 539 246 0 0 chr15 35180269 35180383 -50515371 + FLAM_C SINE Alu 21 134 -9 434 157 0 11 chr15 35180385 35180474 -50515280 + (TA)n Simple_repeat Simple_repeat 1 88 0 998 195 5 5 chr15 35180479 35180664 -50515090 + AluSg/x SINE Alu 119 303 -7 329 344 89 0 chr15 35181704 35181861 -50513893 + L2 LINE L2 3102 3272 0 334 343 47 18 chr15 35183002 35183171 -50512583 - MIR3 SINE MIR -15 193 20 189 107 0 0 chr15 35186159 35186187 -50509567 + (TG)n Simple_repeat Simple_repeat 2 29 0 304 301 0 0 chr15 35187139 35187232 -50508522 + MIR SINE MIR 170 262 0 181 308 37 28 chr15 35187323 35187430 -50508324 + L2 LINE L2 2948 3055 -217 685 266 174 14 chr15 35187519 35187794 -50507960 - MER5C DNA MER1_type 0 324 6 211 164 33 0 chr15 35187920 35187981 -50507773 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 232 263 40 10 chr15 35189040 35189139 -50506615 - L2 LINE L2 -214 3058 2957 2833 157 24 22 chr15 35189162 35189450 -50506304 - Tigger3b DNA MER2_type -2529 499 208 2194 103 7 0 chr15 35189450 35189741 -50506013 - AluSc SINE Alu -16 293 1 2833 157 24 22 chr15 35189741 35189950 -50505804 - Tigger3b DNA MER2_type -2820 208 1 582 252 32 7 chr15 35190024 35190179 -50505575 - MIR SINE MIR -102 160 2 505 241 9 0 chr15 35190473 35190589 -50505165 - L2 LINE L2 -1 3312 3196 2088 132 3 0 chr15 35190652 35190941 -50504813 - AluSc SINE Alu -19 290 1 975 204 60 23 chr15 35191236 35191452 -50504302 - MER58A DNA MER1_type 0 224 1 224 300 107 27 chr15 35191710 35191860 -50503894 + L3b LINE CR1 1301 1462 -121 230 321 146 6 chr15 35194030 35194195 -50501559 - MIR SINE MIR -74 188 1 23 33 0 0 chr15 35194463 35194493 -50501261 + AT_rich Low_complexity Low_complexity 1 30 0 456 270 121 51 chr15 35194527 35194749 -50501005 - L2 LINE L2 -77 3236 3031 1799 124 110 58 chr15 35194749 35195095 -50500659 - THE1B LTR MaLR 0 364 1 456 270 121 51 chr15 35195095 35195321 -50500433 - L2 LINE L2 -282 3031 2756 185 143 29 0 chr15 35196832 35196867 -50498887 + L2 LINE L2 3265 3300 -13 228 316 113 39 chr15 35198006 35198237 -50497517 + L2 LINE L2 2565 2812 -502 278 351 117 52 chr15 35198330 35198655 -50497099 + L2 LINE L2 2853 3198 -74 2253 115 3 3 chr15 35199438 35199750 -50496004 + AluSx SINE Alu 1 312 0 1686 176 24 14 chr15 35201221 35201517 -50494237 + AluJo SINE Alu 1 299 -13 822 171 11 4 chr15 35201529 35201795 -50493959 + GA-rich Low_complexity Low_complexity 1 268 0 307 118 0 20 chr15 35201797 35201848 -50493906 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 219 330 60 10 chr15 35201877 35201977 -50493777 + MIR SINE MIR 38 142 -66 391 252 114 23 chr15 35202240 35202371 -50493383 - L2 LINE L2 0 3313 3171 187 262 33 16 chr15 35202874 35202935 -50492819 + L2 LINE L2 3201 3262 -10 227 153 85 51 chr15 35203247 35203306 -50492448 + MIR SINE MIR 120 180 -82 21 0 0 0 chr15 35204510 35204531 -50491223 + AT_rich Low_complexity Low_complexity 1 21 0 226 303 15 0 chr15 35204788 35204854 -50490900 - L2 LINE L2 -4 3309 3243 244 287 53 11 chr15 35205079 35205173 -50490581 + L2 LINE L2 3160 3257 -15 246 323 52 39 chr15 35209528 35209683 -50486071 - MIR3 SINE MIR -6 202 46 256 273 0 0 chr15 35210389 35210444 -50485310 + (TATG)n Simple_repeat Simple_repeat 4 58 0 249 276 48 38 chr15 35211222 35211327 -50484427 - MIR SINE MIR -68 140 35 257 224 0 0 chr15 35211488 35211546 -50484208 + (CA)n Simple_repeat Simple_repeat 2 59 0 817 190 5 54 chr15 35212620 35212675 -50483079 - MER58A DNA MER1_type -2209 211 155 1541 173 60 0 chr15 35212675 35212967 -50482787 - AluJo SINE Alu 0 308 1 817 190 5 54 chr15 35212967 35213094 -50482660 - MER58A DNA MER1_type -2265 155 37 814 215 21 5 chr15 35214237 35214423 -50481331 + MER5A DNA MER1_type 1 189 0 251 285 153 0 chr15 35214444 35214581 -50481173 - MIR3 SINE MIR -48 160 3 662 204 90 114 chr15 35217193 35217349 -50478405 + MER8 DNA MER2_type 1 150 -89 2280 113 0 0 chr15 35217349 35217651 -50478103 - AluSq SINE Alu -11 302 1 662 204 90 114 chr15 35217651 35217739 -50478015 + MER8 DNA MER2_type 150 239 0 180 224 47 71 chr15 35217768 35217853 -50477901 - MIR SINE MIR -51 211 129 2418 90 0 3 chr15 35218022 35218332 -50477422 - AluY SINE Alu -2 309 1 287 263 90 60 chr15 35219364 35219497 -50476257 - L2 LINE L2 0 3272 3136 435 273 101 19 chr15 35219831 35220040 -50475714 - MIR SINE MIR -25 237 12 191 273 76 15 chr15 35220125 35220191 -50475563 + L2 LINE L2 3238 3307 -6 211 374 54 12 chr15 35220844 35221010 -50474744 + MIR SINE MIR 72 244 -18 321 197 0 0 chr15 35221025 35221091 -50474663 + (TAGG)n Simple_repeat Simple_repeat 2 67 0 341 305 66 23 chr15 35221184 35221355 -50474399 + MIR SINE MIR 38 214 -48 2031 113 43 7 chr15 35221359 35221485 -50474269 + AluSx SINE Alu 1 121 -191 387 0 0 0 chr15 35221485 35221528 -50474226 + (CA)n Simple_repeat Simple_repeat 2 44 0 2031 113 43 7 chr15 35221528 35221683 -50474071 + AluSx SINE Alu 121 292 -20 196 268 36 0 chr15 35221701 35221757 -50473997 + MIR SINE MIR 203 260 -2 750 220 75 6 chr15 35223556 35223729 -50472025 + MER5A DNA MER1_type 3 187 -2 300 202 30 97 chr15 35224118 35224244 -50471510 + MIR SINE MIR 43 163 -63 470 241 62 0 chr15 35224592 35224704 -50471050 - MER119 DNA MER1_type -3 580 462 2210 117 0 0 chr15 35224755 35225053 -50470701 - AluSx SINE Alu -14 298 1 245 227 0 0 chr15 35225061 35225105 -50470649 - MER119 DNA MER1_type -500 83 40 311 242 0 33 chr15 35226936 35227027 -50468727 - MIR SINE MIR -3 259 172 23 33 0 0 chr15 35228291 35228321 -50467433 + AT_rich Low_complexity Low_complexity 1 30 0 386 331 16 8 chr15 35228857 35228978 -50466776 + MIR SINE MIR 20 141 -121 254 278 0 0 chr15 35229025 35229079 -50466675 + L2 LINE L2 3217 3270 -2 257 49 73 0 chr15 35229892 35229933 -50465821 + T-rich Low_complexity Low_complexity 2 45 0 284 327 85 20 chr15 35231962 35232115 -50463639 + MIR SINE MIR 41 203 -59 2212 118 20 0 chr15 35232251 35232548 -50463206 + AluSg SINE Alu 1 303 -7 243 0 0 0 chr15 35232748 35232775 -50462979 + (T)n Simple_repeat Simple_repeat 1 27 0 2348 90 3 10 chr15 35232927 35233237 -50462517 + AluSp SINE Alu 1 308 -5 275 125 0 0 chr15 35234526 35234566 -50461188 - L2 LINE L2 -219 3053 3014 321 316 71 13 chr15 35235018 35235173 -50460581 + MER5A DNA MER1_type 26 189 0 249 308 35 71 chr15 35235597 35235766 -50459988 - MIR3 SINE MIR -14 194 32 368 304 137 25 chr15 35235891 35236095 -50459659 - MIR SINE MIR -2 260 34 251 280 32 32 chr15 35237063 35237220 -50458534 + L2 LINE L2 2928 3084 -188 2277 97 0 0 chr15 35237583 35237873 -50457881 - AluSx SINE Alu -22 290 1 206 176 0 0 chr15 35237875 35237909 -50457845 - MIR SINE MIR -7 255 222 2070 99 3 0 chr15 35238254 35238586 -50457168 - AluY SINE Alu 0 333 1 1487 116 70 0 chr15 35238697 35238912 -50456842 - MER30 DNA MER1_type 0 230 1 1152 35 0 0 chr15 35239606 35239747 -50456007 + (TTC)n Simple_repeat Simple_repeat 1 141 0 240 358 33 25 chr15 35240753 35240873 -50454881 - L2 LINE L2 -6 3266 3146 426 260 99 42 chr15 35243235 35243427 -50452327 + MIR SINE MIR 11 213 -49 2073 127 0 40 chr15 35244515 35244838 -50450916 + AluJb SINE Alu 1 310 -2 351 0 0 0 chr15 35245787 35245826 -50449928 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 303 341 0 chr15 35246711 35246843 -50448911 - MER91A DNA MER1_type -12 184 8 613 241 134 31 chr15 35248719 35248943 -50446811 + MIR SINE MIR 2 248 -14 793 240 39 5 chr15 35249362 35249566 -50446188 - MER58A DNA MER1_type -13 211 1 333 167 0 125 chr15 35249656 35249715 -50446039 - MER103 DNA DNA -60 106 62 2297 113 0 3 chr15 35249715 35250024 -50445730 + AluSg SINE Alu 1 308 -2 333 167 0 125 chr15 35250024 35250060 -50445694 - MER103 DNA DNA -104 62 23 243 0 0 0 chr15 35252048 35252075 -50443679 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2525 88 12 9 chr15 35254256 35254599 -50441155 - THE1B LTR MaLR -20 344 1 354 239 0 0 chr15 35254727 35254794 -50440960 - L2 LINE L2 0 3313 3247 553 204 183 7 chr15 35254794 35254931 -50440823 - MER5A DNA MER1_type 0 189 29 1026 213 80 37 chr15 35254966 35255296 -50440458 - MER33 DNA MER1_type 0 324 1 421 307 17 28 chr15 35256411 35256587 -50439167 + MIR SINE MIR 39 212 -50 264 77 0 0 chr15 35257254 35257293 -50438461 + (TG)n Simple_repeat Simple_repeat 2 40 0 488 202 160 34 chr15 35257309 35257428 -50438326 - MER94 DNA DNA 0 134 1 731 286 62 4 chr15 35257619 35257860 -50437894 + MIR SINE MIR 8 262 0 305 274 71 0 chr15 35257859 35257943 -50437811 + MIR SINE MIR 55 144 -64 * 931 157 7 0 chr15 35257949 35258126 -50437628 + FRAM SINE Alu 1 176 0 199 396 21 0 chr15 35258147 35258243 -50437511 + MIR SINE MIR 159 256 -6 209 200 22 0 chr15 35258245 35258290 -50437464 + CT-rich Low_complexity Low_complexity 2 47 0 308 330 80 0 chr15 35258954 35259066 -50436688 - L2 LINE L2 -1 3271 3151 441 0 0 0 chr15 35259509 35259558 -50436196 + (TA)n Simple_repeat Simple_repeat 2 50 0 556 282 34 13 chr15 35259742 35259891 -50435863 + MER5A DNA MER1_type 35 186 -3 1971 97 4 8 chr15 35259908 35260166 -50435588 - AluSg SINE Alu -11 299 43 249 61 0 0 chr15 35260167 35260200 -50435554 - Alu SINE Alu -230 71 39 377 276 62 24 chr15 35260737 35260900 -50434854 + MIR3 SINE MIR 2 173 -35 477 284 37 122 chr15 35261781 35262052 -50433702 + L2 LINE L2 3024 3271 -1 702 254 149 0 chr15 35262417 35262645 -50433109 - MIR SINE MIR 0 262 1 303 277 106 11 chr15 35262659 35262753 -50433001 + MER5A DNA MER1_type 2 104 -85 260 265 137 10 chr15 35262691 35262793 -50432961 - MER5A DNA MER1_type -22 167 53 * 198 0 0 0 chr15 35264860 35264882 -50430872 + (T)n Simple_repeat Simple_repeat 1 22 0 873 190 0 11 chr15 35265574 35265758 -50429996 - MER33 DNA MER1_type 0 363 182 786 189 8 0 chr15 35265758 35265880 -50429874 - FLAM_A SINE Alu -17 125 3 784 211 13 0 chr15 35265882 35266034 -50429720 - MER33 DNA MER1_type -170 154 1 543 285 64 0 chr15 35266600 35266772 -50428982 + MIR SINE MIR 79 261 -1 225 279 16 0 chr15 35268708 35268769 -50426985 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 214 338 99 13 chr15 35268986 35269137 -50426617 + L2 LINE L2 1207 1370 -1944 1551 246 67 0 chr15 35269249 35269652 -50426102 - L1MC4 LINE L1 -142 7900 7471 553 325 96 48 chr15 35269756 35270360 -50425394 + L2 LINE L2 2226 2858 -456 1610 162 78 90 chr15 35270534 35270973 -50424781 - L1MB7 LINE L1 -28 6156 5724 569 265 15 8 chr15 35271130 35271262 -50424492 + L2 LINE L2 3140 3272 0 380 325 18 30 chr15 35271719 35271888 -50423866 - MIR SINE MIR -3 259 93 428 313 142 8 chr15 35272053 35272268 -50423486 + MIR SINE MIR 9 244 -18 209 345 24 12 chr15 35272516 35272600 -50423154 - L2 LINE L2 -76 3196 3112 1669 164 3 59 chr15 35274789 35274931 -50420823 + AluJo SINE Alu 1 149 -163 2076 131 3 7 chr15 35274931 35275229 -50420525 + AluSx SINE Alu 1 297 -15 1669 164 3 59 chr15 35275229 35275410 -50420344 + AluJo SINE Alu 149 306 -6 2466 130 8 8 chr15 35276103 35276458 -50419296 + THE1A LTR MaLR 1 355 0 2353 91 0 10 chr15 35276469 35276778 -50418976 - AluSx SINE Alu -6 306 1 454 342 10 20 chr15 35277405 35277607 -50418147 - MIR SINE MIR -50 212 13 333 257 177 0 chr15 35277845 35277958 -50417796 - MER94 DNA DNA 0 134 2 495 284 27 44 chr15 35278099 35278282 -50417472 + MIR SINE MIR 82 261 -1 272 232 81 30 chr15 35278682 35278781 -50416973 + MLT1L LTR MaLR 508 611 -4 219 306 32 48 chr15 35279186 35279310 -50416444 - MIR SINE MIR -65 143 22 198 309 0 0 chr15 35279613 35279668 -50416086 - L2 LINE L2 -1003 2311 2257 283 315 6 37 chr15 35280975 35281137 -50414617 + (CATA)n Simple_repeat Simple_repeat 1 157 0 206 178 0 22 chr15 35282619 35282664 -50413090 + (TAA)n Simple_repeat Simple_repeat 3 46 0 604 336 8 25 chr15 35283366 35283618 -50412136 - MIR SINE MIR -2 260 20 465 327 79 18 chr15 35283632 35283910 -50411844 - L3 LINE CR1 -351 1226 932 349 299 104 18 chr15 35283973 35284137 -50411617 + MIR SINE MIR 84 261 -1 24 53 0 0 chr15 35284220 35284258 -50411496 + AT_rich Low_complexity Low_complexity 1 38 0 187 317 150 33 chr15 35285112 35285232 -50410522 + L3 LINE CR1 693 826 -751 483 245 42 33 chr15 35285346 35285529 -50410225 - MIR SINE MIR -19 243 62 2425 69 3 0 chr15 35285599 35285902 -50409852 + AluY SINE Alu 1 304 -7 1035 189 87 5 chr15 35286273 35286469 -50409285 - MER58A DNA MER1_type 0 224 13 313 295 0 9 chr15 35286471 35286586 -50409168 - MIR SINE MIR -65 143 50 2041 139 0 7 chr15 35286731 35287025 -50408729 + AluJb SINE Alu 1 292 -20 616 296 14 19 chr15 35287721 35287937 -50407817 + MIR SINE MIR 46 260 -2 261 244 11 44 chr15 35288361 35288451 -50407303 - MIR SINE MIR -85 123 37 192 290 140 45 chr15 35289880 35290101 -50405653 - L2 LINE L2 -219 3053 2812 505 262 16 0 chr15 35292032 35292158 -50403596 - MER94 DNA DNA -3 131 4 8999 201 40 35 chr15 35292537 35293211 -50402543 - L1MB7 LINE L1 -16 6666 5997 363 98 0 0 chr15 35293211 35293272 -50402482 + (CAT)n Simple_repeat Simple_repeat 3 63 0 8999 201 40 35 chr15 35293272 35294041 -50401713 - L1MB7 LINE L1 -685 5997 5233 2391 83 0 10 chr15 35294041 35294343 -50401411 - AluY SINE Alu -12 299 1 8999 201 40 35 chr15 35294343 35294796 -50400958 - L1MB7 LINE L1 -1449 5233 4784 282 116 0 0 chr15 35294796 35294839 -50400915 + (TG)n Simple_repeat Simple_repeat 2 44 0 8999 201 40 35 chr15 35294839 35296061 -50399693 - L1MB7 LINE L1 -1898 4784 3531 6042 217 50 30 chr15 35296055 35297993 -50397761 - L1MB7 LINE L1 -4660 1986 2 * 5891 124 25 34 chr15 35298125 35299036 -50396718 + MER4D LTR ERV1 1 903 0 205 207 0 17 chr15 35299487 35299545 -50396209 + (TTA)n Simple_repeat Simple_repeat 2 58 0 803 221 52 102 chr15 35299684 35300009 -50395745 + MER5C DNA MER1_type 1 309 -15 2315 94 10 0 chr15 35300664 35300961 -50394793 - AluSc SINE Alu -9 300 1 1723 120 0 0 chr15 35301212 35301445 -50394309 - AluSg/x SINE Alu -9 301 69 344 297 138 4 chr15 35302799 35303000 -50392754 - MIR SINE MIR -12 250 22 294 265 131 46 chr15 35304090 35304140 -50391614 - MIR SINE MIR -68 140 96 2820 197 26 0 chr15 35304140 35304669 -50391085 - L1MB5 LINE L1 -8 6166 5624 294 265 131 46 chr15 35304669 35304792 -50390962 - MIR SINE MIR -112 96 16 246 62 0 0 chr15 35306348 35306380 -50389374 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 378 280 142 60 chr15 35306541 35306695 -50389059 + L1ME4a LINE L1 5579 5719 -402 1426 181 24 55 chr15 35306695 35307027 -50388727 + AluJo SINE Alu 1 323 0 378 280 142 60 chr15 35307027 35307153 -50388601 + L1ME4a LINE L1 5719 5883 -238 302 301 55 48 chr15 35308279 35308425 -50387329 - MIR SINE MIR -12 250 104 2259 107 0 19 chr15 35308437 35308747 -50387007 + AluSx SINE Alu 1 304 -8 1422 118 9 5 chr15 35311145 35311356 -50384398 - AluSg/x SINE Alu -6 306 95 398 191 52 78 chr15 35311665 35311780 -50383974 + MARNA DNA Mariner 258 369 -217 281 244 12 61 chr15 35313468 35313550 -50382204 + L2 LINE L2 3187 3264 -8 400 286 48 0 chr15 35313616 35313742 -50382012 - MIR SINE MIR -3 259 128 836 169 24 24 chr15 35313742 35313908 -50381846 - MLT1B LTR MaLR -29 361 196 533 241 59 29 chr15 35313970 35314140 -50381614 - MLT1B LTR MaLR -199 175 1 204 289 0 0 chr15 35314143 35314195 -50381559 - MIR SINE MIR -161 101 50 364 191 0 0 chr15 35314484 35314547 -50381207 + MER5B DNA MER1_type 2 64 -114 335 194 233 0 chr15 35314548 35314651 -50381103 + L1MC4 LINE L1 6947 7073 -969 2376 223 95 10 chr15 35314657 35315277 -50380477 + L1MC4 LINE L1 7230 7902 -140 241 192 39 0 chr15 35315284 35315336 -50380418 + L1MC4 LINE L1 7989 8042 0 461 256 17 8 chr15 35315345 35315462 -50380292 + MER5B DNA MER1_type 51 168 -10 818 228 70 0 chr15 35315476 35315647 -50380107 + MER5A DNA MER1_type 7 189 0 320 260 170 0 chr15 35317366 35317466 -50378288 - L2 LINE L2 0 3272 3156 1511 171 51 81 chr15 35317602 35318038 -50377716 + MLT1B LTR MaLR 1 390 0 229 286 18 0 chr15 35318862 35318918 -50376836 + L2 LINE L2 3204 3260 -12 386 300 58 8 chr15 35319767 35319903 -50375851 + MIR SINE MIR 30 170 -57 363 264 169 60 chr15 35320685 35320886 -50374868 + MIR SINE MIR 13 235 -27 181 329 27 0 chr15 35322820 35322893 -50372861 - L2 LINE L2 -208 3064 2990 669 222 83 17 chr15 35322927 35323107 -50372647 + MIR SINE MIR 17 208 -54 181 314 0 0 chr15 35323735 35323786 -50371968 - L3 LINE CR1 -1 1576 1526 183 42 0 0 chr15 35324114 35324138 -50371616 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 466 252 39 0 chr15 35325315 35325418 -50370336 + MIR SINE MIR 79 185 -77 355 302 279 16 chr15 35326184 35326442 -50369312 + L2 LINE L2 2942 3267 -5 261 237 0 17 chr15 35326803 35326862 -50368892 + L2 LINE L2 3187 3244 -28 186 43 0 0 chr15 35326876 35326899 -50368855 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 273 350 28 33 chr15 35326925 35327105 -50368649 - MIR SINE MIR -70 192 14 490 327 64 28 chr15 35327210 35327461 -50368293 - MIR SINE MIR 0 262 3 498 223 45 0 chr15 35327533 35327645 -50368109 + MIR SINE MIR 86 202 -60 1505 71 20 0 chr15 35328457 35328655 -50367099 + AluY SINE Alu 93 294 -17 243 0 0 0 chr15 35328774 35328801 -50366953 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 386 30 8 chr15 35328983 35329115 -50366639 - MIR3 SINE MIR -7 201 67 24 0 0 0 chr15 35329238 35329262 -50366492 + AT_rich Low_complexity Low_complexity 1 24 0 1142 173 19 42 chr15 35329903 35330117 -50365637 - AluJo SINE Alu -17 295 87 2217 113 0 3 chr15 35330129 35330429 -50365325 - AluSx SINE Alu -9 303 5 181 292 0 0 chr15 35330779 35330827 -50364927 - L3 LINE CR1 -2 1575 1528 468 317 40 15 chr15 35331063 35331262 -50364492 - L3 LINE CR1 -129 1448 1245 221 260 20 0 chr15 35333019 35333069 -50362685 + MIR SINE MIR 22 72 -136 217 236 18 18 chr15 35333431 35333486 -50362268 - MIR SINE MIR -108 154 100 209 284 71 71 chr15 35335209 35335336 -50360418 - MIR SINE MIR -73 189 63 369 0 0 0 chr15 35336046 35336087 -50359667 + (CA)n Simple_repeat Simple_repeat 2 42 0 1422 162 56 212 chr15 35336094 35337057 -50358697 - Charlie2 DNA MER1_type -37 2825 2013 839 274 62 49 chr15 35337067 35337435 -50358319 - Charlie2 DNA MER1_type -2489 373 1 258 257 20 81 chr15 35337940 35338024 -50357730 - L1ME4a LINE L1 -1 6120 6046 2300 79 0 0 chr15 35338024 35338344 -50357410 + AluSc SINE Alu 1 320 0 258 257 20 81 chr15 35338344 35338406 -50357348 - L1ME4a LINE L1 -75 6046 5982 357 257 9 35 chr15 35338525 35338638 -50357116 + MIR SINE MIR 109 218 -44 208 204 74 0 chr15 35338645 35338699 -50357055 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2153 130 0 0 chr15 35338794 35339093 -50356661 - AluSx SINE Alu -13 299 1 931 269 133 18 chr15 35339093 35339491 -50356263 - L1ME4a LINE L1 -294 5827 5384 295 60 40 0 chr15 35339992 35340042 -50355712 + (TC)n Simple_repeat Simple_repeat 1 52 0 208 229 0 0 chr15 35340315 35340363 -50355391 + GA-rich Low_complexity Low_complexity 2 49 0 2054 96 26 42 chr15 35341127 35341439 -50354315 - AluY SINE Alu -4 307 1 440 311 118 30 chr15 35342366 35342697 -50353057 + L2 LINE L2 2952 3311 -2 216 320 74 33 chr15 35342695 35342817 -50352937 + MIR SINE MIR 63 189 -73 * 494 333 34 6 chr15 35343313 35343490 -50352264 - MIR3 SINE MIR -15 193 12 198 308 27 62 chr15 35343572 35343718 -50352036 - L3b LINE CR1 -320 1263 1123 1328 191 93 18 chr15 35395356 35395527 -50300227 - AluJo SINE Alu -13 299 98 396 0 0 0 chr15 35395527 35395571 -50300183 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1328 191 93 18 chr15 35395571 35395677 -50300077 - AluJo SINE Alu -214 98 1 266 284 10 29 chr15 35397179 35397281 -50298473 - MIR SINE MIR -117 145 46 531 231 210 31 chr15 35397521 35397716 -50298038 + MIR SINE MIR 32 261 -1 21 0 0 0 chr15 35399240 35399261 -50296493 + AT_rich Low_complexity Low_complexity 1 21 0 192 200 0 0 chr15 35399610 35399650 -50296104 - L2 LINE L2 0 3272 3233 503 186 26 9 chr15 35399653 35399766 -50295988 + MIR SINE MIR 125 239 -23 552 136 0 0 chr15 35399993 35400074 -50295680 + MER5A DNA MER1_type 1 81 -108 586 206 0 40 chr15 35400089 35400249 -50295505 + FLAM_C SINE Alu 13 167 0 494 179 8 119 chr15 35400249 35400383 -50295371 + MER5A DNA MER1_type 71 189 0 198 333 89 33 chr15 35401238 35401451 -50294303 - L2 LINE L2 -223 3049 2825 196 308 47 28 chr15 35401586 35401693 -50294061 - MIR SINE MIR -129 133 25 956 184 11 5 chr15 35404555 35404740 -50291014 - MER3 DNA MER1_type -8 201 16 356 273 7 58 chr15 35404828 35404967 -50290787 + MER5A DNA MER1_type 52 183 -6 186 189 0 0 chr15 35405751 35405788 -50289966 + A-rich Low_complexity Low_complexity 1 37 0 485 310 8 0 chr15 35405976 35406105 -50289649 + MIR3 SINE MIR 58 187 -21 204 305 221 0 chr15 35406746 35406877 -50288877 + MIR3 SINE MIR 14 173 -35 2081 120 0 4 chr15 35406912 35407216 -50288538 - AluSx SINE Alu 0 311 9 26 50 0 0 chr15 35407648 35407688 -50288066 + AT_rich Low_complexity Low_complexity 1 40 0 474 297 141 15 chr15 35407735 35408190 -50287564 - L1ME4a LINE L1 -58 6063 5552 181 322 11 33 chr15 35408852 35408942 -50286812 - L2 LINE L2 -3 3310 3223 231 326 12 12 chr15 35408953 35409039 -50286715 - MIR3 SINE MIR -21 187 102 459 0 0 0 chr15 35409570 35409621 -50286133 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 2244 119 0 0 chr15 35409623 35409918 -50285836 - AluSx SINE Alu -17 295 1 180 217 22 0 chr15 35410096 35410142 -50285612 - MIR SINE MIR -130 132 86 317 238 24 24 chr15 35411281 35411365 -50284389 - L2 LINE L2 -1 3271 3188 443 228 108 80 chr15 35412094 35412222 -50283532 + L1MC5 LINE L1 7537 7660 -301 2115 131 65 0 chr15 35412222 35412573 -50283181 - L1MC1 LINE L1 0 6333 5960 443 228 108 80 chr15 35412573 35412843 -50282911 + L1MC5 LINE L1 7660 7946 -15 438 271 79 17 chr15 35412843 35413020 -50282734 - MIR SINE MIR -25 237 50 2063 260 42 2 chr15 35413027 35413573 -50282181 - L1ME3A LINE L1 0 6170 5603 243 122 0 0 chr15 35414475 35414524 -50281230 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 272 275 1 38 chr15 35415289 35415410 -50280344 + MIR SINE MIR 30 148 -60 416 226 8 83 chr15 35416540 35416673 -50279081 + MIR SINE MIR 70 192 -70 437 168 17 173 chr15 35417944 35418117 -50277637 - MER5B DNA MER1_type -8 170 25 530 261 136 10 chr15 35418768 35418967 -50276787 - MIR SINE MIR -20 242 19 879 203 21 31 chr15 35419011 35419203 -50276551 - MER3 DNA MER1_type -3 206 17 240 219 55 0 chr15 35419214 35419287 -50276467 - MIR3 SINE MIR -41 167 91 189 365 10 10 chr15 35419587 35419683 -50276071 + MIR SINE MIR 20 115 -147 279 315 45 0 chr15 35419832 35419921 -50275833 - L2 LINE L2 0 3313 3221 218 307 105 0 chr15 35420360 35420474 -50275280 - L2 LINE L2 -35 3237 3112 404 234 22 73 chr15 35421417 35421554 -50274200 + L1MB7 LINE L1 6055 6184 0 2294 98 0 0 chr15 35421619 35421948 -50273806 - AluY SINE Alu 0 330 2 1538 173 3 53 chr15 35421961 35422293 -50273461 - AluJo SINE Alu 0 317 1 1698 144 32 58 chr15 35422412 35422725 -50273029 + AluSx SINE Alu 1 305 -7 1657 133 24 109 chr15 35423187 35423526 -50272228 + AluYb8 SINE Alu 1 310 -8 327 312 84 26 chr15 35423727 35423881 -50271873 + MIR SINE MIR 34 196 -66 180 287 76 89 chr15 35424672 35424829 -50270925 + MIR3 SINE MIR 15 169 -39 209 114 45 23 chr15 35425529 35425573 -50270181 + A-rich Low_complexity Low_complexity 4 48 0 360 296 77 18 chr15 35426891 35427060 -50268694 - MIR3 SINE MIR -14 194 16 292 296 0 0 chr15 35427194 35427265 -50268489 + MIR SINE MIR 80 150 -112 215 158 0 35 chr15 35427267 35427324 -50268430 + (ATG)n Simple_repeat Simple_repeat 2 56 0 576 260 48 62 chr15 35427334 35427561 -50268193 + MIR SINE MIR 10 233 -29 546 253 136 0 chr15 35431605 35431759 -50263995 - MER63A DNA MER1_type -27 183 9 21 36 0 0 chr15 35432122 35432150 -50263604 + AT_rich Low_complexity Low_complexity 1 28 0 2384 231 24 0 chr15 35432403 35432897 -50262857 + MER119 DNA MER1_type 5 510 -73 1998 77 0 18 chr15 35433056 35433403 -50262351 + AluY SINE Alu 1 342 0 36 0 0 0 chr15 35434967 35435003 -50260751 + AT_rich Low_complexity Low_complexity 1 36 0 212 83 83 0 chr15 35436086 35436122 -50259632 + T-rich Low_complexity Low_complexity 2 40 0 424 220 0 11 chr15 35436473 35436564 -50259190 + MER97a DNA MER1_type? 82 171 -723 237 233 0 58 chr15 35437135 35437238 -50258516 - L1M LINE L1 -2443 5365 5269 33 73 0 0 chr15 35437497 35437565 -50258189 + AT_rich Low_complexity Low_complexity 1 68 0 231 345 56 49 chr15 35438901 35439043 -50256711 + L2 LINE L2 2875 3017 -255 466 289 57 6 chr15 35439115 35439274 -50256480 + MER91A DNA MER1_type 6 172 -24 245 286 57 67 chr15 35439400 35439505 -50256249 + L2 LINE L2 3169 3272 0 549 292 62 0 chr15 35440278 35440456 -50255298 + MIR SINE MIR 3 191 -71 2281 77 0 20 chr15 35440458 35440758 -50254996 - AluSx SINE Alu -18 294 1 187 309 144 0 chr15 35440871 35440968 -50254786 + MIR SINE MIR 146 256 -6 333 0 0 0 chr15 35441353 35441390 -50254364 + (CA)n Simple_repeat Simple_repeat 2 38 0 221 136 0 23 chr15 35442086 35442130 -50253624 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 1704 139 0 15 chr15 35443960 35444227 -50251527 + AluSx SINE Alu 39 301 -11 544 243 129 0 chr15 35444314 35444454 -50251300 + MIR3 SINE MIR 37 194 -14 313 292 105 36 chr15 35444483 35444702 -50251052 + L1ME4a LINE L1 5683 5916 -246 373 250 0 9 chr15 35444727 35444835 -50250919 + L1ME4a LINE L1 5962 6068 -53 23 68 0 0 chr15 35444847 35444891 -50250863 + AT_rich Low_complexity Low_complexity 1 44 0 511 299 43 12 chr15 35445490 35445654 -50250100 + MIR SINE MIR 20 188 -74 939 231 51 65 chr15 35445962 35446531 -50249223 + MLT1C LTR MaLR 1 626 0 681 273 77 47 chr15 35446611 35447066 -50248688 + MLT1J LTR MaLR 15 446 0 264 361 62 7 chr15 35447095 35447239 -50248515 - MIR3 SINE MIR -6 202 51 769 306 140 11 chr15 35447361 35447904 -50247850 + L2 LINE L2 2684 3307 -6 628 237 56 28 chr15 35448985 35449200 -50246554 + L1MC5 LINE L1 7706 7926 -35 8539 111 9 6 chr15 35449270 35450527 -50245227 + L1P LINE L1 3505 4765 -1381 287 265 27 52 chr15 35450576 35450732 -50245022 - MIR SINE MIR -65 143 26 279 351 0 0 chr15 35451497 35451571 -50244183 - L2 LINE L2 -41 3231 3158 2055 171 67 11 chr15 35454816 35455261 -50240493 + MER63C DNA MER1_type 45 514 -416 422 200 74 89 chr15 35455261 35455396 -50240358 - FLAM_A SINE Alu 0 133 1 824 168 15 0 chr15 35455399 35455530 -50240224 - AluJo/FLAM SINE Alu -169 133 1 1927 151 17 7 chr15 35455530 35455828 -50239926 - AluJo SINE Alu -11 301 1 376 213 0 0 chr15 35455831 35455892 -50239862 - AluJ/FLAM SINE Alu -241 61 1 * 1100 179 63 50 chr15 35455892 35456274 -50239480 + MER63C DNA MER1_type 506 929 -1 455 287 45 94 chr15 35459115 35459359 -50236395 + MIR SINE MIR 12 243 -19 201 276 197 0 chr15 35459410 35459486 -50236268 - L2 LINE L2 -9 3263 3173 638 314 57 30 chr15 35459758 35460124 -50235630 - L2 LINE L2 -559 2755 2380 946 159 0 20 chr15 35460156 35460307 -50235447 + AluJo SINE Alu 1 148 -164 342 182 123 117 chr15 35460668 35460822 -50234932 + MER20B DNA MER1_type 628 782 -1 267 220 66 44 chr15 35461941 35462032 -50233722 + L1ME4a LINE L1 5996 6088 -33 724 203 0 16 chr15 35462581 35462709 -50233045 + FLAM_A SINE Alu 5 130 -3 1569 199 18 3 chr15 35462832 35463114 -50232640 - AluJb SINE Alu -26 286 1 183 114 0 0 chr15 35463151 35463186 -50232568 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1695 148 4 11 chr15 35463186 35463464 -50232290 - AluJb SINE Alu -36 276 1 1520 187 40 4 chr15 35463788 35464066 -50231688 - AluJo SINE Alu -22 290 3 307 232 288 11 chr15 35464160 35464337 -50231417 + L1MC/D LINE L1 5562 5787 -2021 263 180 0 10 chr15 35464338 35464396 -50231358 + AluSp SINE Alu 124 170 -133 670 158 125 6 chr15 35464412 35464571 -50231183 - L1M4 LINE L1 -3917 2465 2295 724 187 8 15 chr15 35464710 35464844 -50230910 + FLAM_C SINE Alu 1 133 0 378 272 136 73 chr15 35465198 35465580 -50230174 + L1ME4a LINE L1 5558 5963 -158 527 233 29 47 chr15 35469258 35469430 -50226324 + MIR SINE MIR 84 252 -10 2197 154 96 51 chr15 35469837 35470325 -50225429 - LTR54 LTR ERV1 0 510 1 1712 138 72 18 chr15 35470393 35470669 -50225085 - AluSx SINE Alu -21 291 1 2493 87 0 0 chr15 35471087 35471397 -50224357 - AluSg SINE Alu 0 310 1 473 289 44 50 chr15 35471697 35471877 -50223877 - MIR3 SINE MIR -4 204 26 1190 243 36 26 chr15 35471983 35472288 -50223466 + MLT1A2 LTR MaLR 63 370 -4 674 254 78 41 chr15 35472343 35472587 -50223167 + MIR SINE MIR 8 260 -2 2377 80 7 0 chr15 35472680 35472982 -50222772 + AluSp SINE Alu 1 304 -9 2295 162 63 68 chr15 35473355 35473941 -50221813 - L1MB8 LINE L1 -1 6177 5595 597 184 29 0 chr15 35473941 35474044 -50221710 - AluSp SINE Alu -206 107 2 368 186 0 0 chr15 35474044 35474103 -50221651 - L1MB8 LINE L1 -570 5608 5550 315 306 25 31 chr15 35476726 35476886 -50218868 - MER117 DNA MER1_type -38 159 1 2203 95 7 7 chr15 35476946 35477242 -50218512 - AluSg SINE Alu -14 296 1 2184 114 3 3 chr15 35477294 35477592 -50218162 + AluSg SINE Alu 1 298 -12 2410 54 14 7 chr15 35477592 35477889 -50217865 + AluSp SINE Alu 1 299 -14 449 226 212 0 chr15 35477906 35478052 -50217702 - MER5A DNA MER1_type 0 189 13 21 0 0 0 chr15 35478372 35478393 -50217361 + AT_rich Low_complexity Low_complexity 1 21 0 222 253 313 0 chr15 35478875 35478958 -50216796 - L2 LINE L2 -6 3307 3199 240 86 0 0 chr15 35480030 35480065 -50215689 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr15 35483030 35483065 -50212689 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 35483298 35483329 -50212425 + AT_rich Low_complexity Low_complexity 1 31 0 379 76 0 30 chr15 35484317 35484383 -50211371 + (CA)n Simple_repeat Simple_repeat 2 65 0 228 85 17 34 chr15 35485478 35485537 -50210217 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr15 35486329 35486352 -50209402 + AT_rich Low_complexity Low_complexity 1 23 0 2113 115 3 10 chr15 35488171 35488475 -50207279 + AluSx SINE Alu 1 302 -10 200 272 25 49 chr15 35488569 35488650 -50207104 - MIR3 SINE MIR -115 93 15 224 232 0 0 chr15 35489247 35489303 -50206451 + A-rich Low_complexity Low_complexity 1 56 0 1814 153 0 20 chr15 35489643 35489938 -50205816 + AluJo SINE Alu 1 289 -23 709 286 43 17 chr15 35491749 35491980 -50203774 - MIR SINE MIR -10 252 16 30 43 0 43 chr15 35492346 35492388 -50203366 + AT_rich Low_complexity Low_complexity 1 40 -27 2083 119 3 0 chr15 35492388 35492673 -50203081 - AluSx SINE Alu -26 286 1 30 43 0 43 chr15 35492673 35492700 -50203054 + AT_rich Low_complexity Low_complexity 40 67 0 2051 117 7 0 chr15 35494188 35494494 -50201260 - AluSx SINE Alu 0 308 1 204 175 25 0 chr15 35494572 35494612 -50201142 - L2 LINE L2 -10 3303 3263 1911 123 4 7 chr15 35494658 35494934 -50200820 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr15 35494938 35494958 -50200796 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 219 0 24 chr15 35494973 35495014 -50200740 - MIR SINE MIR -195 67 28 863 222 82 16 chr15 35496527 35496770 -50198984 + MIR SINE MIR 4 262 0 1092 90 0 0 chr15 35496964 35497097 -50198657 + AluSq/x SINE Alu 1 133 -179 2134 112 10 10 chr15 35497103 35497398 -50198356 + AluSx SINE Alu 6 300 -12 254 191 21 128 chr15 35498572 35498666 -50197088 + MIR SINE MIR 20 103 -105 274 226 0 0 chr15 35498743 35498796 -50196958 - L3 LINE CR1 -5 1572 1520 780 281 48 43 chr15 35498835 35499182 -50196572 - MIR SINE MIR -1 261 13 475 295 134 34 chr15 35500973 35501271 -50194483 - MER102b DNA MER1_type -3 338 11 1670 172 0 21 chr15 35502691 35502981 -50192773 - AluJo SINE Alu -26 286 3 513 273 6 0 chr15 35505976 35506141 -50189613 - L1M4 LINE L1 -3140 3006 2841 951 141 134 149 chr15 35506153 35506283 -50189471 - AluJb SINE Alu -30 282 152 875 124 6 0 chr15 35506283 35506460 -50189294 + (TA)n Simple_repeat Simple_repeat 2 179 0 951 141 134 149 chr15 35506460 35506475 -50189279 - AluJb SINE Alu -160 152 138 1004 73 17 6 chr15 35506475 35506653 -50189101 + (TA)n Simple_repeat Simple_repeat 1 180 0 951 141 134 149 chr15 35506653 35506782 -50188972 - AluJb SINE Alu -174 138 11 607 276 101 31 chr15 35507033 35507518 -50188236 + L1ME4a LINE L1 5556 6074 -47 198 0 0 0 chr15 35507856 35507878 -50187876 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 233 317 112 45 chr15 35508190 35508414 -50187340 - L3b LINE CR1 -235 1348 1110 760 127 0 40 chr15 35508417 35508543 -50187211 - FLAM_A SINE Alu -9 133 13 1820 214 32 30 chr15 35508796 35509261 -50186493 + MER74A LTR ERVL 1 469 -89 1231 120 184 50 chr15 35509261 35509560 -50186194 + MER44D DNA MER2_type 1 609 0 1820 214 32 30 chr15 35509560 35509651 -50186103 + MER74A LTR ERVL 469 558 0 526 343 29 5 chr15 35509651 35509855 -50185899 - MIR SINE MIR -22 240 32 439 345 71 3 chr15 35510076 35510223 -50185531 + MARNA DNA Mariner 166 302 -284 270 0 0 0 chr15 35510223 35510253 -50185501 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 439 345 71 3 chr15 35510253 35510444 -50185310 + MARNA DNA Mariner 302 527 -59 1559 91 5 0 chr15 35511518 35511717 -50184037 - AluSx SINE Alu -112 200 1 829 164 90 53 chr15 35511717 35511906 -50183848 + AluJo SINE Alu 101 296 -16 664 264 156 0 chr15 35512146 35512358 -50183396 + MIR SINE MIR 18 262 0 391 309 50 70 chr15 35512397 35512598 -50183156 + MIR SINE MIR 35 231 -31 260 277 0 0 chr15 35512623 35512688 -50183066 + (CTA)n Simple_repeat Simple_repeat 2 66 0 212 100 25 0 chr15 35517112 35517152 -50178602 + (CAA)n Simple_repeat Simple_repeat 3 43 0 195 146 0 0 chr15 35517372 35517413 -50178341 + (T)n Simple_repeat Simple_repeat 1 41 0 1745 158 3 35 chr15 35519047 35519358 -50176396 - AluJo SINE Alu -11 301 1 250 327 53 35 chr15 35519438 35519551 -50176203 + L2 LINE L2 3133 3247 -25 768 264 111 5 chr15 35519703 35519919 -50175835 - MIR SINE MIR 0 262 24 937 198 0 11 chr15 35521274 35521451 -50174303 - FRAM SINE Alu -1 175 1 250 350 50 0 chr15 35522210 35522310 -50173444 - MIR SINE MIR -111 151 47 22 35 0 0 chr15 35526756 35526785 -50168969 + AT_rich Low_complexity Low_complexity 1 29 0 272 235 56 112 chr15 35527141 35527320 -50168434 + MIR SINE MIR 94 262 0 208 327 182 0 chr15 35527323 35527433 -50168321 - L3b LINE CR1 -187 1396 1267 333 275 9 18 chr15 35527858 35527967 -50167787 + HAL1b LINE L1 1234 1341 -7 370 300 113 33 chr15 35528239 35528389 -50167365 + MER91A DNA MER1_type 1 162 -34 373 232 0 32 chr15 35528972 35529067 -50166687 - MIR SINE MIR -74 188 97 224 238 126 97 chr15 35529215 35529405 -50166349 + MIR SINE MIR 19 216 -46 243 0 0 0 chr15 35529997 35530024 -50165730 + (CA)n Simple_repeat Simple_repeat 1 27 0 373 175 36 26 chr15 35532644 35532984 -50162770 + (CA)n Simple_repeat Simple_repeat 1 343 0 371 190 33 54 chr15 35533004 35533188 -50162566 + (CA)n Simple_repeat Simple_repeat 1 180 0 379 192 39 37 chr15 35533208 35533565 -50162189 + (CA)n Simple_repeat Simple_repeat 1 358 0 294 135 48 40 chr15 35533658 35533784 -50161970 + (CA)n Simple_repeat Simple_repeat 1 127 0 668 216 165 16 chr15 35534072 35534266 -50161488 + MIR SINE MIR 39 261 -1 1867 131 0 11 chr15 35534279 35534553 -50161201 - AluJb SINE Alu -17 295 25 533 299 71 50 chr15 35538024 35538124 -50157630 + MARNA DNA Mariner 133 229 -357 2219 100 3 10 chr15 35538124 35538425 -50157329 - AluSx SINE Alu -13 299 1 533 299 71 50 chr15 35538425 35538746 -50157008 + MARNA DNA Mariner 229 563 -23 2190 56 45 0 chr15 35539437 35539727 -50156027 - AluY SINE Alu 0 302 1 2201 110 0 0 chr15 35540813 35541121 -50154633 + AluSg1 SINE Alu 1 308 0 347 294 68 0 chr15 35542516 35542648 -50153106 - MIR3 SINE MIR -9 199 58 394 253 102 42 chr15 35543208 35543374 -50152380 + L2 LINE L2 3120 3295 -18 767 269 31 18 chr15 35543724 35543951 -50151803 + MIR SINE MIR 29 258 -4 280 309 3 7 chr15 35544269 35544350 -50151404 + MIR SINE MIR 1 81 -127 898 207 121 88 chr15 35544353 35544832 -50150922 + MER34B LTR ERV1 5 499 -66 23 0 0 0 chr15 35548789 35548812 -50146942 + AT_rich Low_complexity Low_complexity 1 23 0 248 263 90 83 chr15 35549972 35550128 -50145626 - L2 LINE L2 -1506 1808 1652 279 0 0 0 chr15 35551020 35551051 -50144703 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 335 136 8 6 chr15 35551768 35551889 -50143865 + MER53 DNA DNA 1 188 -1 266 227 13 0 chr15 35552286 35552344 -50143410 - MIR SINE MIR -56 152 91 426 299 21 53 chr15 35553106 35553293 -50142461 + MIR SINE MIR 32 212 -50 725 175 0 36 chr15 35553599 35553736 -50142018 + FLAM_A SINE Alu 1 132 -1 394 248 9 44 chr15 35554036 35554118 -50141636 + MIR3 SINE MIR 76 154 -54 1642 194 3 3 chr15 35554118 35554412 -50141342 - AluJo SINE Alu -18 294 1 394 248 9 44 chr15 35554412 35554442 -50141312 + MIR3 SINE MIR 154 184 -24 285 29 0 0 chr15 35554743 35554777 -50140977 + (CA)n Simple_repeat Simple_repeat 2 35 0 2152 111 0 10 chr15 35555435 35555733 -50140021 + AluSg SINE Alu 1 295 -15 307 226 24 36 chr15 35555993 35556077 -50139677 + MIR SINE MIR 67 149 -113 221 224 0 0 chr15 35558705 35558754 -50137000 + (CA)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr15 35559358 35559395 -50136359 + (CA)n Simple_repeat Simple_repeat 2 38 0 741 79 0 0 chr15 35559397 35559498 -50136256 + (TA)n Simple_repeat Simple_repeat 1 101 0 393 316 29 35 chr15 35559520 35559691 -50136063 + MIR3 SINE MIR 30 199 -9 289 267 193 27 chr15 35559815 35559965 -50135789 + MIR SINE MIR 26 200 -62 2674 154 2 5 chr15 35560181 35560615 -50135139 + Tigger2a DNA MER2_type 2 434 0 274 349 47 31 chr15 35560742 35560871 -50134883 - L2 LINE L2 -6 3266 3136 190 333 67 42 chr15 35560994 35561114 -50134640 - L2 LINE L2 -221 3051 2929 2355 105 0 0 chr15 35561114 35561420 -50134334 + AluSx SINE Alu 1 306 -6 672 308 54 14 chr15 35562722 35562943 -50132811 - MIR SINE MIR -25 237 8 24 53 0 0 chr15 35563740 35563778 -50131976 + AT_rich Low_complexity Low_complexity 1 38 0 2344 213 52 21 chr15 35564621 35565279 -50130475 - L1ME1 LINE L1 -6 6160 5483 2632 206 37 35 chr15 35565299 35565698 -50130056 + MER82 DNA MER2_type 3 405 -248 2335 73 17 10 chr15 35565698 35566000 -50129754 + AluSx SINE Alu 1 304 -8 2632 206 37 35 chr15 35566000 35566250 -50129504 + MER82 DNA MER2_type 405 653 0 437 310 35 69 chr15 35566346 35566520 -50129234 + L2 LINE L2 3105 3272 0 440 304 68 32 chr15 35566549 35566769 -50128985 + MIR SINE MIR 20 247 -15 197 210 247 37 chr15 35568053 35568134 -50127620 + L2 LINE L2 3175 3272 0 223 254 0 16 chr15 35568677 35568740 -50127014 + GA-rich Low_complexity Low_complexity 1 62 0 339 233 108 25 chr15 35570267 35570387 -50125367 - MIR SINE MIR -58 150 21 284 0 0 27 chr15 35572044 35572081 -50123673 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr15 35573405 35573435 -50122319 + (A)n Simple_repeat Simple_repeat 1 30 0 202 219 24 0 chr15 35573459 35573500 -50122254 + L2 LINE L2 3254 3295 -18 216 0 0 0 chr15 35574507 35574531 -50121223 + (T)n Simple_repeat Simple_repeat 1 24 0 361 309 79 39 chr15 35575223 35575455 -50120299 + MIR SINE MIR 13 250 -12 405 0 0 0 chr15 35575542 35575587 -50120167 + (TG)n Simple_repeat Simple_repeat 2 46 0 407 256 76 104 chr15 35576480 35576730 -50119024 + MIR SINE MIR 2 244 -18 390 289 37 44 chr15 35578974 35579109 -50116645 + L2 LINE L2 3139 3272 0 201 121 0 0 chr15 35579473 35579506 -50116248 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 420 55 0 0 chr15 35579501 35579556 -50116198 + (GA)n Simple_repeat Simple_repeat 2 56 0 713 225 7 0 chr15 35582167 35582309 -50113445 + MIR SINE MIR 97 239 -23 201 211 0 0 chr15 35582361 35582399 -50113355 + L2 LINE L2 3256 3293 -20 24 0 0 0 chr15 35583044 35583068 -50112686 + AT_rich Low_complexity Low_complexity 1 24 0 203 347 14 0 chr15 35583125 35583197 -50112557 - L2 LINE L2 0 3272 3200 891 225 17 92 chr15 35583472 35583611 -50112143 + L1MC4 LINE L1 7736 7884 -158 2229 112 0 0 chr15 35583611 35583907 -50111847 + AluSq SINE Alu 1 296 -17 891 225 17 92 chr15 35583907 35584115 -50111639 + L1MC4 LINE L1 7884 8041 -1 1768 150 6 54 chr15 35584177 35584491 -50111263 + AluJb SINE Alu 1 299 -13 2076 132 0 0 chr15 35584574 35584862 -50110892 - AluSx SINE Alu -24 288 1 506 309 164 5 chr15 35585281 35585501 -50110253 - MIR SINE MIR -6 256 2 21 0 0 0 chr15 35585632 35585653 -50110101 + AT_rich Low_complexity Low_complexity 1 21 0 188 222 0 16 chr15 35586057 35586120 -50109634 + CT-rich Low_complexity Low_complexity 3 64 0 235 153 51 0 chr15 35586303 35586362 -50109392 + LTR66 LTR ERVL 380 441 -169 257 150 12 38 chr15 35586366 35586446 -50109308 + (TA)n Simple_repeat Simple_repeat 1 78 0 252 0 0 0 chr15 35587074 35587102 -50108652 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1340 284 30 5 chr15 35587189 35587590 -50108164 + L1MC4a LINE L1 5496 5906 -1902 276 30 0 0 chr15 35588252 35588285 -50107469 + (TTG)n Simple_repeat Simple_repeat 1 33 0 290 319 42 0 chr15 35588425 35588544 -50107210 - MIR SINE MIR -34 228 105 274 258 23 70 chr15 35588991 35589119 -50106635 - L2 LINE L2 -1 3312 3191 326 348 25 103 chr15 35589548 35589830 -50105924 + L2 LINE L2 2927 3186 -86 22 0 0 0 chr15 35589830 35589852 -50105902 + AT_rich Low_complexity Low_complexity 1 22 0 1586 196 119 5 chr15 35589852 35590229 -50105525 - L1MD3 LINE L1 -2 7993 7574 1004 217 9 13 chr15 35590229 35590455 -50105299 - AluJo SINE Alu -1 311 87 218 263 25 50 chr15 35590472 35590552 -50105202 + L2 LINE L2 3195 3272 0 362 235 154 51 chr15 35590904 35591055 -50104699 + L2 LINE L2 2986 3171 -142 1736 99 0 0 chr15 35591055 35591276 -50104478 - AluSc SINE Alu -5 304 84 362 235 154 51 chr15 35591276 35591358 -50104396 + L2 LINE L2 3171 3243 -70 255 273 50 30 chr15 35592659 35592758 -50102996 - MIR3 SINE MIR -53 155 55 2468 70 6 10 chr15 35592759 35593071 -50102683 - AluSx SINE Alu -1 311 1 2296 72 3 7 chr15 35593994 35594286 -50101468 - AluY SINE Alu -20 291 1 471 108 0 14 chr15 35594331 35594405 -50101349 - MER53 DNA DNA -1 188 116 * 532 117 175 0 chr15 35594343 35594446 -50101308 + MER53 DNA DNA 23 143 -46 23 0 0 0 chr15 35594471 35594494 -50101260 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr15 35594750 35594774 -50100980 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr15 35595181 35595202 -50100552 + AT_rich Low_complexity Low_complexity 1 21 0 2284 97 0 0 chr15 35596279 35596579 -50099175 - AluSc SINE Alu -9 300 1 365 96 0 0 chr15 35598269 35598321 -50097433 + MADE1 DNA Mariner 1 52 -28 1082 262 94 37 chr15 35598518 35599060 -50096694 - L1ME4a LINE L1 -10 6111 5539 21 36 0 0 chr15 35599420 35599448 -50096306 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr15 35599683 35599710 -50096044 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 229 214 34 34 chr15 35600185 35600274 -50095480 + L1ME4a LINE L1 5995 6083 -38 555 286 116 5 chr15 35601884 35602083 -50093671 + MIR SINE MIR 34 254 -8 1210 314 91 45 chr15 35602144 35602820 -50092934 + L2 LINE L2 2499 3229 -84 1838 158 7 10 chr15 35602820 35603123 -50092631 - AluJb SINE Alu -8 304 3 1210 314 91 45 chr15 35603123 35603208 -50092546 + L2 LINE L2 3229 3309 -4 203 319 17 59 chr15 35603199 35603288 -50092466 + L3b LINE CR1 1465 1549 -34 * 2332 98 0 3 chr15 35603288 35603584 -50092170 - AluSx SINE Alu -17 295 1 203 319 17 59 chr15 35603584 35603613 -50092141 + L3b LINE CR1 1549 1578 -5 532 337 151 26 chr15 35603908 35604365 -50091389 + L3 LINE CR1 940 1453 -124 1377 191 66 11 chr15 35604487 35604759 -50090995 + AluJo SINE Alu 7 293 -19 1629 154 59 11 chr15 35604763 35605036 -50090718 + AluSx SINE Alu 1 286 -26 192 77 0 0 chr15 35605039 35605065 -50090689 + (CATA)n Simple_repeat Simple_repeat 2 27 0 230 362 19 0 chr15 35607093 35607198 -50088556 + GA-rich Low_complexity Low_complexity 3 109 0 1755 100 116 4 chr15 35607292 35607551 -50088203 - AluSx SINE Alu -12 300 13 23 0 0 0 chr15 35607668 35607691 -50088063 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr15 35607715 35607774 -50087980 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr15 35608105 35608240 -50087514 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr15 35608635 35608779 -50086975 + MIR SINE MIR 34 192 -64 530 283 50 11 chr15 35612710 35612890 -50082864 - MIR SINE MIR -72 190 4 328 253 67 14 chr15 35614024 35614149 -50081605 + MIR SINE MIR 20 142 -66 560 298 95 44 chr15 35614175 35614427 -50081327 + L3 LINE CR1 1312 1576 -1 294 95 0 0 chr15 35615162 35615204 -50080550 + (TG)n Simple_repeat Simple_repeat 2 43 0 338 289 87 10 chr15 35615454 35615558 -50080196 - MIR SINE MIR -108 154 43 183 80 0 0 chr15 35616276 35616301 -50079453 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2334 168 59 30 chr15 35616418 35616889 -50078865 + MLT1D LTR MaLR 21 505 0 207 0 0 0 chr15 35617041 35617064 -50078690 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 196 318 0 16 chr15 35617408 35617471 -50078283 + L2 LINE L2 3249 3310 -3 321 295 134 7 chr15 35618010 35618159 -50077595 - MIR3 SINE MIR -6 202 35 227 235 29 44 chr15 35618231 35618299 -50077455 + LTR11 LTR ERV 412 478 -206 191 170 0 38 chr15 35619091 35619144 -50076610 + CT-rich Low_complexity Low_complexity 6 56 0 1941 119 91 0 chr15 35619941 35620226 -50075528 - AluSx SINE Alu -1 311 1 22 35 0 0 chr15 35620517 35620546 -50075208 + AT_rich Low_complexity Low_complexity 1 29 0 572 261 48 48 chr15 35621654 35621988 -50073766 - L1MC5 LINE L1 -77 7884 7551 1000 289 60 26 chr15 35624701 35625116 -50070638 + LTR16A LTR ERVL 16 444 -6 2074 138 3 0 chr15 35625328 35625626 -50070128 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 35626632 35626653 -50069101 + AT_rich Low_complexity Low_complexity 1 21 0 1924 128 62 0 chr15 35627558 35627847 -50067907 - AluSq SINE Alu -6 307 1 1546 172 3 60 chr15 35628040 35628359 -50067395 - AluJo SINE Alu -11 301 1 218 323 107 45 chr15 35628446 35628793 -50066961 - L2 LINE L2 -176 3096 2725 1860 166 3 13 chr15 35629484 35629797 -50065957 - AluJo SINE Alu -2 310 1 24 0 0 0 chr15 35629812 35629836 -50065918 + AT_rich Low_complexity Low_complexity 1 24 0 294 50 0 0 chr15 35631210 35631250 -50064504 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 367 20 82 0 chr15 35631626 35631675 -50064079 - MADE1 DNA Mariner 0 80 28 1995 153 0 0 chr15 35632073 35632368 -50063386 - AluSx SINE Alu -17 295 1 270 0 0 0 chr15 35632926 35632956 -50062798 + (TA)n Simple_repeat Simple_repeat 2 31 0 906 110 0 8 chr15 35633354 35633472 -50062282 + AluJo/FLAM SINE Alu 1 117 -185 995 94 0 0 chr15 35633475 35633602 -50062152 - AluSg/x SINE Alu -16 296 170 2462 46 0 0 chr15 35633781 35634123 -50061631 - AluY SINE Alu 0 342 1 1620 101 18 0 chr15 35634686 35634904 -50060850 + AluSg/x SINE Alu 85 306 -4 340 321 197 5 chr15 35635697 35635890 -50059864 - MIR SINE MIR -7 255 26 3018 130 122 17 chr15 35635905 35636382 -50059372 + MER1A DNA MER1_type 1 527 0 2270 95 3 7 chr15 35636667 35636963 -50058791 + AluSp SINE Alu 1 295 -18 293 272 83 41 chr15 35637376 35637545 -50058209 - MIR3 SINE MIR -30 178 3 189 250 21 0 chr15 35637806 35637854 -50057900 + L2 LINE L2 3265 3313 0 246 291 76 71 chr15 35638673 35638883 -50056871 + Charlie8 DNA MER1_type 38 248 -2169 341 280 34 17 chr15 35640108 35640226 -50055528 + MIR SINE MIR 40 159 -103 2169 113 0 17 chr15 35640519 35640819 -50054935 - AluSx SINE Alu -17 295 1 2250 112 3 0 chr15 35640821 35641125 -50054629 - AluSx SINE Alu -7 305 1 307 284 83 9 chr15 35641352 35641461 -50054293 - MIR SINE MIR -61 147 31 592 235 123 0 chr15 35642489 35642652 -50053102 - MER5A DNA MER1_type 0 189 4 1442 135 82 4 chr15 35642972 35643217 -50052537 + MER21A LTR ERV1 1 264 -667 3052 172 61 11 chr15 35643222 35643750 -50052004 + MER21A LTR ERV1 376 929 -2 223 286 95 0 chr15 35643756 35643840 -50051914 + MIR SINE MIR 157 248 -14 225 122 20 61 chr15 35644081 35644130 -50051624 - L2 LINE L2 -2 3270 3224 1956 130 21 0 chr15 35644249 35644534 -50051220 - AluSx SINE Alu -1 311 21 205 86 29 0 chr15 35645484 35645519 -50050235 + (TG)n Simple_repeat Simple_repeat 1 36 0 648 245 47 82 chr15 35645582 35645925 -50049829 + L1MC5 LINE L1 7604 7934 -27 23 78 0 0 chr15 35649552 35649603 -50046151 + AT_rich Low_complexity Low_complexity 1 51 0 207 188 0 0 chr15 35650146 35650194 -50045560 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 274 313 40 20 chr15 35650203 35650302 -50045452 - L2 LINE L2 -10 3303 3203 731 262 80 22 chr15 35650723 35650948 -50044806 - MIR SINE MIR -10 252 15 191 341 49 49 chr15 35651149 35651272 -50044482 + L2 LINE L2 3150 3272 0 1684 98 47 4 chr15 35651890 35652145 -50043609 - L1MA2 LINE L1 0 6304 6039 201 381 24 12 chr15 35652571 35652655 -50043099 - MIR SINE MIR -170 92 8 200 241 19 19 chr15 35652881 35652935 -50042819 - L2 LINE L2 -22 3291 3238 198 357 60 12 chr15 35655159 35655327 -50040427 - L2 LINE L2 -19 3294 3119 31 68 0 0 chr15 35655334 35655393 -50040361 + AT_rich Low_complexity Low_complexity 1 59 0 339 272 43 11 chr15 35655873 35655965 -50039789 + MIR SINE MIR 37 131 -77 1031 104 31 31 chr15 35657357 35657520 -50038234 - L1PA13 LINE L1 -2 6161 5999 329 340 6 0 chr15 35659143 35659305 -50036449 + (CA)n Simple_repeat Simple_repeat 2 164 0 408 40 0 0 chr15 35660376 35660426 -50035328 + (GA)n Simple_repeat Simple_repeat 2 51 0 212 294 12 12 chr15 35660441 35660526 -50035228 + GA-rich Low_complexity Low_complexity 1 85 0 789 170 182 0 chr15 35660643 35660802 -50034952 + MER5A DNA MER1_type 1 188 -1 657 112 0 0 chr15 35663231 35663320 -50032434 + 5S rRNA rRNA 2 90 -31 1101 162 22 5 chr15 35663883 35664068 -50031686 + MER5A DNA MER1_type 2 189 0 764 184 54 84 chr15 35664922 35665161 -50030593 + ORSL DNA AcHobo 1 232 -43 1911 180 88 28 chr15 35665168 35665601 -50030153 - MLT1C LTR MaLR -7 460 2 1790 164 10 3 chr15 35665752 35666044 -50029710 + AluJb SINE Alu 1 294 -18 201 180 0 0 chr15 35668552 35668602 -50027152 + (TA)n Simple_repeat Simple_repeat 2 51 0 3197 153 31 31 chr15 35668819 35669427 -50026327 - L1MA8 LINE L1 -2 6289 5682 2243 107 24 0 chr15 35669478 35669776 -50025978 - AluSx SINE Alu -7 305 1 437 313 10 36 chr15 35670912 35671104 -50024650 + MIR SINE MIR 10 196 -66 418 273 12 13 chr15 35675441 35675561 -50020193 - MER5A DNA MER1_type -3 178 57 1871 163 0 7 chr15 35676207 35676496 -50019258 + AluJb SINE Alu 1 287 -25 775 268 73 0 chr15 35676500 35676705 -50019049 - MIR SINE MIR -4 258 39 217 191 0 21 chr15 35677853 35677900 -50017854 + (TAA)n Simple_repeat Simple_repeat 3 48 0 365 285 75 70 chr15 35677903 35678131 -50017623 - MIR SINE MIR -21 241 13 272 270 119 22 chr15 35678140 35678300 -50017454 - MIR SINE MIR -54 208 36 216 283 67 67 chr15 35679610 35679730 -50016024 + MIR3 SINE MIR 15 134 -74 337 240 124 31 chr15 35679801 35679930 -50015824 - L2 LINE L2 0 3313 3173 349 346 57 9 chr15 35679942 35680153 -50015601 - MIR SINE MIR -19 243 23 213 271 103 56 chr15 35680334 35680441 -50015313 - MIR SINE MIR -64 198 87 426 245 99 40 chr15 35681150 35681301 -50014453 - MIR3 SINE MIR -12 196 37 5784 26 0 1 chr15 35681444 35682104 -50013650 - L1PA4 LINE L1 0 6155 5497 236 309 12 12 chr15 35682113 35682197 -50013557 + L2 LINE L2 3187 3270 -2 228 67 0 0 chr15 35682361 35682391 -50013363 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 377 250 50 10 chr15 35682394 35682494 -50013260 - L2 LINE L2 -16 3297 3194 332 303 10 0 chr15 35683914 35684013 -50011741 + L2 LINE L2 2923 3022 -291 260 271 14 0 chr15 35684125 35684195 -50011559 + L2 LINE L2 3242 3312 -1 219 315 8 8 chr15 35684214 35684341 -50011413 + L2 LINE L2 2068 2194 -1120 218 264 121 22 chr15 35684537 35684628 -50011126 + L2 LINE L2 2215 2314 -1000 211 259 148 0 chr15 35684625 35684679 -50011075 + L2 LINE L2 3190 3251 -21 * 383 266 39 39 chr15 35685376 35685504 -50010250 - MIR SINE MIR -65 143 16 246 81 0 0 chr15 35687309 35687346 -50008408 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 290 0 0 chr15 35687378 35687447 -50008307 - MER116 DNA Mariner -11 69 1 295 59 20 20 chr15 35688993 35689044 -50006710 + (CA)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chr15 35689527 35689556 -50006198 + (T)n Simple_repeat Simple_repeat 1 29 0 577 298 40 10 chr15 35690699 35690897 -50004857 + MIR3 SINE MIR 2 205 -3 23 54 0 0 chr15 35692789 35692826 -50002928 + AT_rich Low_complexity Low_complexity 1 37 0 597 328 31 0 chr15 35693434 35693626 -50002128 + Charlie8 DNA MER1_type 1 198 -2219 275 335 59 0 chr15 35693817 35693969 -50001785 - MIR SINE MIR -50 212 52 338 381 62 30 chr15 35694053 35694455 -50001299 + L2 LINE L2 2831 3245 -27 963 192 0 0 chr15 35697074 35697246 -49998508 - FAM SINE Alu -3 172 1 1126 144 5 0 chr15 35697350 35697537 -49998217 - MER53 DNA DNA -1 188 1 189 357 48 34 chr15 35697733 35698002 -49997752 + L2 LINE L2 3031 3303 -10 199 264 0 0 chr15 35698222 35698275 -49997479 + MIR SINE MIR 92 144 -118 27 0 0 0 chr15 35698490 35698517 -49997237 + AT_rich Low_complexity Low_complexity 1 27 0 1683 80 0 4 chr15 35698517 35698742 -49997012 - L1PA6 LINE L1 0 6154 5931 566 276 29 0 chr15 35699784 35699954 -49995800 - L1MC4 LINE L1 -111 7931 7757 195 326 95 0 chr15 35700078 35700173 -49995581 - MIR SINE MIR -57 151 48 581 268 51 65 chr15 35703261 35703537 -49992217 + L2 LINE L2 3042 3313 0 440 208 42 0 chr15 35703803 35703899 -49991855 + MIR SINE MIR 33 132 -76 243 0 0 0 chr15 35704683 35704710 -49991044 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 227 325 49 8 chr15 35705452 35705575 -49990179 - MIR SINE MIR -45 217 90 379 295 58 35 chr15 35706649 35706822 -49988932 + MER5B DNA MER1_type 2 178 0 214 333 49 0 chr15 35707201 35707282 -49988472 - L2 LINE L2 -16 3256 3172 564 322 5 0 chr15 35707340 35707539 -49988215 - MIR SINE MIR -1 261 62 2353 92 0 0 chr15 35708404 35708707 -49987047 + AluSc SINE Alu 1 303 -6 516 254 101 56 chr15 35709187 35709632 -49986122 + L1ME LINE L1 5374 5834 -317 738 134 63 0 chr15 35709828 35709970 -49985784 - L1MA8 LINE L1 -5 6286 6136 221 250 112 14 chr15 35711139 35711238 -49984516 + MIR SINE MIR 40 146 -66 197 369 28 28 chr15 35712016 35712192 -49983562 + L2 LINE L2 2788 2963 -351 217 286 151 25 chr15 35712343 35712462 -49983292 + L2 LINE L2 3180 3313 0 228 290 0 0 chr15 35712674 35712743 -49983011 + MIR SINE MIR 88 156 -106 191 328 16 0 chr15 35714044 35714108 -49981646 - L2 LINE L2 -22 3250 3186 454 296 80 65 chr15 35714336 35714660 -49981094 - L2 LINE L2 -7 3265 2937 246 232 214 9 chr15 35714660 35714772 -49980982 - L2 LINE L2 -1 3271 3137 190 236 18 0 chr15 35714800 35714855 -49980899 - L2 LINE L2 -286 2986 2931 327 165 38 51 chr15 35716049 35716128 -49979626 - MER69 DNA AcHobo 0 2526 2449 * 747 243 0 0 chr15 35716122 35716270 -49979484 - MER69 DNA AcHobo -2378 148 1 360 326 5 42 chr15 35716614 35716804 -49978950 - MER5A DNA MER1_type 0 189 7 275 201 147 71 chr15 35717574 35717720 -49978034 + MIR SINE MIR 13 175 -66 1938 262 73 46 chr15 35717791 35719309 -49976445 + L1ME LINE L1 43 1659 -4602 444 289 16 0 chr15 35719533 35719654 -49976100 + MIR3 SINE MIR 78 200 -8 275 205 36 116 chr15 35722323 35722435 -49973319 + MIR SINE MIR 86 188 -74 2345 164 29 56 chr15 35722923 35723441 -49972313 + L1MB4 LINE L1 5440 5943 -231 230 156 47 0 chr15 35723449 35723513 -49972241 + (TA)n Simple_repeat Simple_repeat 1 67 0 182 61 0 30 chr15 35723513 35723546 -49972208 + (TTA)n Simple_repeat Simple_repeat 2 33 0 903 198 121 0 chr15 35723550 35723757 -49971997 + L1MB4 LINE L1 5949 6180 0 219 36 0 0 chr15 35724673 35724701 -49971053 + (CA)n Simple_repeat Simple_repeat 2 29 0 375 290 35 41 chr15 35725109 35725254 -49970500 + MIR SINE MIR 8 151 -111 28 0 0 0 chr15 35725971 35725999 -49969755 + AT_rich Low_complexity Low_complexity 1 28 0 734 157 5 110 chr15 35726468 35726659 -49969095 - MER63B DNA MER1_type -265 171 1 190 370 76 66 chr15 35727151 35727440 -49968314 + L2 LINE L2 2976 3267 -5 219 314 9 9 chr15 35728397 35728502 -49967252 - MIR SINE MIR -63 145 41 207 313 68 25 chr15 35728570 35728733 -49967021 + MIR SINE MIR 21 190 -72 310 185 25 0 chr15 35728998 35729079 -49966675 + (TG)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr15 35729383 35729406 -49966348 + AT_rich Low_complexity Low_complexity 1 23 0 253 248 316 0 chr15 35730026 35730143 -49965611 + MIR3 SINE MIR 48 201 -7 2334 92 10 0 chr15 35730439 35730745 -49965009 + AluSp SINE Alu 1 309 -4 446 312 59 14 chr15 35730761 35730982 -49964772 - MIR SINE MIR -24 238 8 470 256 156 6 chr15 35731857 35732069 -49963685 + MIR SINE MIR 17 256 -6 284 347 104 14 chr15 35732149 35732293 -49963461 + MIR3 SINE MIR 29 185 -23 287 255 62 42 chr15 35733042 35733212 -49962542 - MIR SINE MIR -70 192 20 6754 164 29 2 chr15 35733334 35733751 -49962003 + L1PB1 LINE L1 3981 4385 -1766 252 0 0 0 chr15 35733751 35733779 -49961975 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6754 164 29 2 chr15 35733779 35735134 -49960620 + L1PB1 LINE L1 4385 5790 -361 26 50 0 0 chr15 35735135 35735175 -49960579 + AT_rich Low_complexity Low_complexity 1 40 0 2455 86 7 87 chr15 35735191 35735610 -49960144 + L1PB1 LINE L1 5767 6150 -1 3801 249 94 27 chr15 35735790 35737993 -49957761 - HAL1 LINE L1 -1 2506 8 580 284 53 0 chr15 35738484 35738653 -49957101 + MIR SINE MIR 14 191 -71 1734 172 0 20 chr15 35738659 35738956 -49956798 + AluJo SINE Alu 6 296 -16 183 167 0 0 chr15 35739008 35739044 -49956710 + L2 LINE L2 3221 3256 -16 261 236 82 36 chr15 35739591 35739701 -49956053 - MLT1J1 LTR MaLR -308 138 24 227 355 32 8 chr15 35740186 35740310 -49955444 - MIR SINE MIR -50 212 86 242 275 187 0 chr15 35740835 35740926 -49954828 + L2 LINE L2 3201 3308 -5 206 321 0 37 chr15 35741486 35741595 -49954159 + MIR SINE MIR 83 187 -75 22 0 0 0 chr15 35742227 35742249 -49953505 + AT_rich Low_complexity Low_complexity 1 22 0 264 107 0 89 chr15 35742304 35742473 -49953281 + (TA)n Simple_repeat Simple_repeat 1 154 0 295 141 0 73 chr15 35742508 35742974 -49952780 + (TATATG)n Simple_repeat Simple_repeat 1 431 0 845 25 0 2 chr15 35742992 35743136 -49952618 + L1PA4 LINE L1 6028 6169 0 653 263 5 5 chr15 35743161 35743370 -49952384 - L1M4 LINE L1 -3659 2487 2279 905 120 108 6 chr15 35743377 35743544 -49952210 - L1MA7 LINE L1 0 6291 6108 1021 129 25 6 chr15 35743544 35743707 -49952047 - Tigger1 DNA MER2_type -2 2416 2251 831 137 78 13 chr15 35743710 35743863 -49951891 - Tigger1 DNA MER2_type -2255 163 1 410 134 27 130 chr15 35743863 35744053 -49951701 - L1MA6 LINE L1 -175 6122 5953 206 205 0 0 chr15 35744242 35744281 -49951473 + L2 LINE L2 3271 3309 -4 606 88 0 0 chr15 35744556 35744636 -49951118 + MADE1 DNA Mariner 1 80 0 379 234 75 10 chr15 35744742 35744915 -49950839 - MIR SINE MIR -56 206 24 498 33 0 0 chr15 35746121 35746181 -49949573 + (CA)n Simple_repeat Simple_repeat 2 61 0 261 273 124 25 chr15 35747936 35748097 -49947657 + L2 LINE L2 3130 3306 -7 * 627 264 8 73 chr15 35748082 35748328 -49947426 - MIR SINE MIR -10 252 23 201 354 20 0 chr15 35748389 35748488 -49947266 - MIR3 SINE MIR -3 205 105 364 320 33 0 chr15 35748579 35748732 -49947022 - MIR3 SINE MIR -15 193 36 453 158 34 118 chr15 35749081 35749245 -49946509 + MER5B DNA MER1_type 21 164 -14 187 167 28 0 chr15 35749286 35749322 -49946432 + MER5A DNA MER1_type 39 75 -114 599 179 19 13 chr15 35749344 35749500 -49946254 + CT-rich Low_complexity Low_complexity 4 160 0 259 141 31 31 chr15 35749520 35749584 -49946170 + CT-rich Low_complexity Low_complexity 1 64 0 858 194 0 0 chr15 35749584 35749728 -49946026 - FRAM SINE Alu -25 151 8 289 288 98 44 chr15 35749744 35749949 -49945805 + L2 LINE L2 3098 3313 0 735 234 0 23 chr15 35750933 35751108 -49944646 + MIR SINE MIR 37 207 -55 223 286 52 0 chr15 35752095 35752172 -49943582 + MIR3 SINE MIR 127 207 -1 225 171 24 0 chr15 35752617 35752658 -49943096 + GA-rich Low_complexity Low_complexity 2 43 0 378 0 0 0 chr15 35753120 35753162 -49942592 + (TC)n Simple_repeat Simple_repeat 2 43 0 220 242 0 32 chr15 35756294 35756356 -49939398 + L2 LINE L2 3254 3313 0 24 32 0 0 chr15 35756527 35756558 -49939196 + AT_rich Low_complexity Low_complexity 1 31 0 831 231 131 3 chr15 35756579 35756861 -49938893 - L1ME4a LINE L1 -14 6107 5790 198 167 0 0 chr15 35757296 35757332 -49938422 + (TG)n Simple_repeat Simple_repeat 1 36 0 450 304 24 23 chr15 35758435 35758611 -49937143 + MLT1J LTR MaLR 5 222 -271 442 224 31 10 chr15 35758644 35758742 -49937012 - MER81 DNA DNA -11 103 4 334 284 108 54 chr15 35758810 35758958 -49936796 + MLT1J LTR MaLR 318 473 -38 2510 61 3 0 chr15 35759273 35759567 -49936187 - AluY SINE Alu -16 295 1 2177 112 0 0 chr15 35759572 35759858 -49935896 - AluSx SINE Alu -4 308 23 213 343 78 0 chr15 35760141 35760243 -49935511 + MIR3 SINE MIR 3 112 -96 201 267 116 12 chr15 35761936 35762022 -49933732 - MIR SINE MIR -50 212 118 974 116 0 0 chr15 35763402 35763531 -49932223 - FLAM_C SINE Alu -9 134 6 336 48 0 0 chr15 35765208 35765250 -49930504 + (CA)n Simple_repeat Simple_repeat 2 43 0 2286 66 0 33 chr15 35765250 35765553 -49930201 - AluY SINE Alu -18 293 1 201 157 59 20 chr15 35765553 35765593 -49930161 - L2 LINE L2 -6 3307 3261 329 64 0 0 chr15 35765771 35765818 -49929936 + MADE1 DNA Mariner 34 80 0 199 361 0 12 chr15 35765828 35765911 -49929843 - MIR SINE MIR -86 122 41 273 185 0 0 chr15 35767779 35767844 -49927910 + CT-rich Low_complexity Low_complexity 1 65 0 183 352 116 19 chr15 35768785 35769001 -49926753 - MIR SINE MIR -13 249 13 377 266 51 38 chr15 35769677 35769835 -49925919 - MIR3 SINE MIR -29 179 20 244 337 50 70 chr15 35770362 35770662 -49925092 + L2 LINE L2 2944 3237 -35 195 42 0 0 chr15 35770758 35770782 -49924972 + (TTG)n Simple_repeat Simple_repeat 2 25 0 201 39 0 0 chr15 35771384 35771410 -49924344 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 256 61 55 chr15 35771915 35772079 -49923675 + MIR SINE MIR 56 220 -42 2353 77 3 0 chr15 35772103 35772402 -49923352 - AluY SINE Alu -11 300 1 206 176 0 0 chr15 35772457 35772491 -49923263 - MIR SINE MIR -85 123 90 1495 199 16 9 chr15 35773917 35774238 -49921516 + MER33 DNA MER1_type 2 324 0 185 208 0 0 chr15 35774516 35774564 -49921190 + L2 LINE L2 3012 3059 -254 2125 167 136 11 chr15 35774564 35774902 -49920852 + MLT1D LTR MaLR 1 410 -95 2208 141 123 5 chr15 35774902 35775285 -49920469 - MSTA LTR MaLR 0 428 1 2125 167 136 11 chr15 35775285 35775395 -49920359 + MLT1D LTR MaLR 410 505 0 438 258 6 55 chr15 35775508 35775671 -49920083 + L2 LINE L2 3158 3312 -1 667 204 74 49 chr15 35775973 35776135 -49919619 + MER63A DNA MER1_type 1 166 -44 489 281 106 15 chr15 35776766 35776965 -49918789 + MIR SINE MIR 35 251 -11 252 143 0 0 chr15 35778064 35778120 -49917634 + (TG)n Simple_repeat Simple_repeat 1 56 0 377 278 28 61 chr15 35778719 35778899 -49916855 + MIR SINE MIR 79 252 -10 252 286 29 67 chr15 35780112 35780296 -49915458 + MIR SINE MIR 15 190 -72 2183 92 7 0 chr15 35780343 35780646 -49915108 + AluSc SINE Alu 5 309 0 2072 97 14 7 chr15 35781968 35782272 -49913482 - AluSg SINE Alu 0 306 1 241 299 39 47 chr15 35782313 35782440 -49913314 + MER5A DNA MER1_type 52 177 -12 415 171 38 19 chr15 35784170 35784275 -49911479 - MIR3 SINE MIR -1 207 101 233 248 149 33 chr15 35784302 35784423 -49911331 + MIR SINE MIR 1 135 -127 297 0 0 0 chr15 35785050 35785083 -49910671 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 146 0 203 chr15 35785698 35785821 -49909933 + MER5A DNA MER1_type 9 106 -83 780 176 69 25 chr15 35785821 35785980 -49909774 - FRAM SINE Alu -1 175 10 236 122 0 20 chr15 35785985 35786062 -49909692 - FLAM_C SINE Alu 0 161 86 244 250 0 42 chr15 35787112 35787184 -49908570 - L2 LINE L2 -3 3269 3201 226 227 15 15 chr15 35787714 35787780 -49907974 - MIR SINE MIR -38 224 159 708 167 9 0 chr15 35787896 35788010 -49907744 - FLAM_A SINE Alu -18 115 1 306 262 76 44 chr15 35789468 35789612 -49906142 - MIR SINE MIR -67 141 33 455 274 0 0 chr15 35789950 35790067 -49905687 + MIR SINE MIR 112 228 -34 2303 111 0 0 chr15 35790165 35790462 -49905292 - AluSg SINE Alu -13 297 1 487 261 76 6 chr15 35791548 35791705 -49904049 + MIR3 SINE MIR 39 206 -2 2081 143 84 10 chr15 35792313 35792704 -49903050 - L1MA4 LINE L1 -29 6271 5852 2264 201 88 117 chr15 35792727 35793178 -49902576 + MER21B LTR ERV1 12 474 -389 438 69 0 0 chr15 35793178 35793236 -49902518 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1745 138 0 0 chr15 35793237 35793491 -49902263 - AluSx SINE Alu -26 286 33 2264 201 88 117 chr15 35793491 35793843 -49901911 + MER21B LTR ERV1 473 794 -69 301 252 176 0 chr15 35794518 35794637 -49901117 + L3 LINE CR1 1341 1480 -97 276 289 96 0 chr15 35794653 35794757 -49900997 + MIR SINE MIR 117 230 -32 204 296 34 45 chr15 35796540 35796628 -49899126 - L2 LINE L2 -4 3268 3182 1601 148 4 8 chr15 35798124 35798388 -49897366 + L1MD3 LINE L1 7731 7993 -2 483 60 0 0 chr15 35799582 35799649 -49896105 + (TG)n Simple_repeat Simple_repeat 1 67 0 475 241 56 0 chr15 35800641 35800749 -49895005 - L2 LINE L2 -9 3304 3191 840 255 37 9 chr15 35800752 35800968 -49894786 - MER58A DNA MER1_type -1 223 2 441 315 103 13 chr15 35801110 35801342 -49894412 + MIR SINE MIR 7 259 -3 180 200 0 0 chr15 35801348 35801393 -49894361 + (CAA)n Simple_repeat Simple_repeat 2 46 0 216 229 0 0 chr15 35801393 35801441 -49894313 - MIR SINE MIR -83 125 78 504 269 39 0 chr15 35801464 35801594 -49894160 + L2 LINE L2 3174 3308 -5 1717 84 46 0 chr15 35803213 35803452 -49892302 + L1PA13 LINE L1 5910 6159 -4 220 333 0 23 chr15 35803672 35803759 -49891995 + L2 LINE L2 3188 3272 0 22 0 0 0 chr15 35804087 35804109 -49891645 + AT_rich Low_complexity Low_complexity 1 22 0 2281 78 16 56 chr15 35804392 35804714 -49891040 + AluY SINE Alu 1 309 -2 552 261 37 65 chr15 35805585 35805800 -49889954 + MIR SINE MIR 48 256 -6 2165 96 14 0 chr15 35806703 35806985 -49888769 + AluSc SINE Alu 3 288 -21 230 164 18 0 chr15 35807957 35808012 -49887742 + GA-rich Low_complexity Low_complexity 2 57 0 1232 201 5 9 chr15 35808573 35808787 -49886967 + MER20 DNA MER1_type 7 219 0 399 21 0 0 chr15 35808979 35809027 -49886727 + (CA)n Simple_repeat Simple_repeat 2 49 0 1913 106 0 25 chr15 35809224 35809498 -49886256 + AluSx SINE Alu 41 307 -5 282 56 0 0 chr15 35809498 35809534 -49886220 + (GA)n Simple_repeat Simple_repeat 1 36 0 233 229 0 0 chr15 35809770 35809818 -49885936 + L1ME LINE L1 5782 5829 -292 338 273 83 0 chr15 35809835 35809956 -49885798 + L2 LINE L2 3182 3312 -1 204 40 0 0 chr15 35810537 35810562 -49885192 + (GA)n Simple_repeat Simple_repeat 2 26 0 204 277 0 15 chr15 35810882 35810947 -49884807 + GA-rich Low_complexity Low_complexity 1 64 0 1681 271 71 21 chr15 35811398 35811918 -49883836 + MLT1H1 LTR MaLR 1 546 -9 441 305 37 24 chr15 35812063 35812227 -49883527 + MIR SINE MIR 45 210 -52 294 29 0 0 chr15 35813484 35813519 -49882235 + (GA)n Simple_repeat Simple_repeat 1 35 0 330 169 0 0 chr15 35814799 35814864 -49880890 + (CA)n Simple_repeat Simple_repeat 1 65 0 201 224 61 0 chr15 35815621 35815670 -49880084 - MIR3 SINE MIR -47 161 110 330 273 172 8 chr15 35816505 35816633 -49879121 - MIR3 SINE MIR -6 202 54 257 236 18 0 chr15 35817614 35817669 -49878085 + (TG)n Simple_repeat Simple_repeat 1 56 0 243 333 71 37 chr15 35818006 35818300 -49877454 + L2 LINE L2 2809 3112 -160 399 261 28 35 chr15 35818320 35818462 -49877292 + MER117 DNA MER1_type 5 145 -52 353 309 8 8 chr15 35818498 35818621 -49877133 - MIR3 SINE MIR -52 156 34 22 0 0 0 chr15 35819944 35819966 -49875788 + AT_rich Low_complexity Low_complexity 1 22 0 552 333 5 11 chr15 35820113 35820302 -49875452 - MIR3 SINE MIR -1 207 20 868 165 34 6 chr15 35820942 35821118 -49874636 - MER5A DNA MER1_type -8 181 1 29 0 0 0 chr15 35821966 35821995 -49873759 + AT_rich Low_complexity Low_complexity 1 29 0 21 104 0 0 chr15 35823385 35823462 -49872292 + AT_rich Low_complexity Low_complexity 1 77 0 1205 160 51 68 chr15 35824767 35825061 -49870693 + AluJb SINE Alu 2 290 -12 29 0 0 0 chr15 35825170 35825199 -49870555 + AT_rich Low_complexity Low_complexity 1 29 0 2840 16 0 0 chr15 35825424 35825733 -49870021 - AluY SINE Alu -2 309 1 1804 130 42 88 chr15 35826063 35826295 -49869459 + LTR23 LTR ERV1 1 242 -225 2227 72 41 10 chr15 35826295 35826587 -49869167 - AluSq SINE Alu -12 301 1 1804 130 42 88 chr15 35826587 35826599 -49869155 + LTR23 LTR ERV1 242 253 -214 1631 136 0 124 chr15 35826599 35826797 -49868957 - AluJo SINE Alu -13 289 147 2134 87 0 37 chr15 35826797 35827096 -49868658 - AluSc SINE Alu -21 288 1 1631 136 0 124 chr15 35827096 35827227 -49868527 - AluJo SINE Alu -155 147 1 1804 130 42 88 chr15 35827227 35827437 -49868317 + LTR23 LTR ERV1 253 467 0 242 231 167 26 chr15 35827872 35827950 -49867804 + MIR SINE MIR 59 147 -115 453 283 61 24 chr15 35828484 35828696 -49867058 + MIR SINE MIR 31 250 -12 203 269 77 88 chr15 35831237 35831419 -49864335 - L2 LINE L2 -375 2939 2760 417 321 75 25 chr15 35831575 35831815 -49863939 + MER102a DNA MER1_type 71 322 -8 1965 137 3 13 chr15 35831843 35832171 -49863583 - AluSx SINE Alu 0 325 1 536 168 37 10 chr15 35832426 35832587 -49863167 - MER20 DNA MER1_type 0 219 1 1339 160 38 53 chr15 35833639 35833902 -49861852 + AluJo SINE Alu 47 305 -7 1680 175 21 3 chr15 35834796 35834951 -49860803 - AluJb SINE Alu -21 291 127 213 39 0 0 chr15 35834951 35834977 -49860777 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1680 175 21 3 chr15 35834977 35835107 -49860647 - AluJb SINE Alu -185 127 1 451 298 41 7 chr15 35835218 35835385 -49860369 + MIR3 SINE MIR 6 180 -28 295 305 156 0 chr15 35836050 35836204 -49859550 + MIR3 SINE MIR 20 197 -11 234 214 135 34 chr15 35837058 35837147 -49858607 - MIR SINE MIR -21 241 144 452 284 32 56 chr15 35838179 35838429 -49857325 + L2 LINE L2 3006 3249 -23 395 260 188 7 chr15 35838631 35838785 -49856969 + MIR SINE MIR 69 250 -12 664 280 20 30 chr15 35839093 35839327 -49856427 - MIR SINE MIR -12 250 19 323 206 176 0 chr15 35840029 35840131 -49855623 - L1ME3A LINE L1 -5 6165 6046 6668 194 36 23 chr15 35841765 35841819 -49853935 - Charlie1a DNA MER1_type -1311 1450 1398 2443 93 0 0 chr15 35841819 35842120 -49853634 + AluSx SINE Alu 1 301 -11 6668 194 36 23 chr15 35842120 35843223 -49852531 - Charlie1a DNA MER1_type -1363 1398 268 2429 74 0 13 chr15 35843223 35843522 -49852232 - AluY SINE Alu -14 297 3 6668 194 36 23 chr15 35843522 35843793 -49851961 - Charlie1a DNA MER1_type -2493 268 2 21 0 0 0 chr15 35846610 35846631 -49849123 + AT_rich Low_complexity Low_complexity 1 21 0 304 316 115 0 chr15 35846848 35846987 -49848767 - MIR3 SINE MIR -11 197 43 304 331 13 53 chr15 35847102 35847253 -49848501 + MER5B DNA MER1_type 29 173 -5 216 309 60 60 chr15 35847380 35847529 -49848225 + L2 LINE L2 3127 3275 -38 230 296 41 10 chr15 35847655 35847753 -49848001 + L2 LINE L2 3190 3290 -23 239 302 45 56 chr15 35848345 35848524 -49847230 + MER5B DNA MER1_type 1 177 -1 404 224 78 56 chr15 35848579 35848758 -49846996 + MER5A DNA MER1_type 7 189 0 184 189 81 0 chr15 35849086 35849123 -49846631 + L2 LINE L2 3265 3304 -9 728 370 71 6 chr15 35850749 35850918 -49844836 + L3 LINE CR1 1054 1211 -366 243 88 0 0 chr15 35850918 35850952 -49844802 + (TG)n Simple_repeat Simple_repeat 2 35 0 728 370 71 6 chr15 35850952 35851261 -49844493 + L3 LINE CR1 1211 1563 -14 183 197 66 16 chr15 35851982 35852043 -49843711 + MIR3 SINE MIR 108 171 -37 435 38 0 0 chr15 35852904 35852957 -49842797 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 330 87 0 0 chr15 35854630 35854676 -49841078 + (TC)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr15 35855764 35855788 -49839966 + GC_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr15 35856804 35856855 -49838899 + GC_rich Low_complexity Low_complexity 1 51 0 242 210 16 0 chr15 35856940 35857002 -49838752 + (CCG)n Simple_repeat Simple_repeat 2 64 0 35 24 0 0 chr15 35857260 35857302 -49838452 + GC_rich Low_complexity Low_complexity 1 42 0 30 75 0 0 chr15 35857334 35857387 -49838367 + GC_rich Low_complexity Low_complexity 1 53 0 2083 123 26 13 chr15 35860179 35860481 -49835273 + AluSx SINE Alu 1 306 -6 226 333 19 0 chr15 35861641 35861749 -49834005 + (CATATA)n Simple_repeat Simple_repeat 3 112 0 1128 52 0 15 chr15 35862376 35862512 -49833242 - AluSp/q SINE Alu -16 297 164 1189 115 0 0 chr15 35863025 35863190 -49832564 - AluSg/x SINE Alu -4 306 142 2310 82 0 3 chr15 35863304 35863607 -49832147 - AluY SINE Alu -9 302 1 618 150 10 0 chr15 35864864 35864964 -49830790 + AluSg/x SINE Alu 197 297 -15 1272 227 34 70 chr15 35864972 35865152 -49830602 + L1MC4 LINE L1 6535 6720 -1322 1893 97 71 11 chr15 35865152 35865296 -49830458 - AluSp SINE Alu -30 283 149 234 0 0 0 chr15 35865296 35865322 -49830432 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1893 97 71 11 chr15 35865322 35865444 -49830310 - AluSp SINE Alu -164 149 1 2063 124 7 7 chr15 35865445 35865735 -49830019 - AluSx SINE Alu -22 290 1 1272 227 34 70 chr15 35865735 35865936 -49829818 + L1MC4 LINE L1 6719 6904 -1138 1120 171 0 0 chr15 35865942 35866112 -49829642 + FRAM SINE Alu 2 171 -5 1643 108 0 0 chr15 35866113 35866327 -49829427 + AluSc SINE Alu 83 296 -13 1478 143 0 22 chr15 35866356 35866586 -49829168 + AluJo SINE Alu 12 236 -76 2149 107 3 3 chr15 35866686 35866975 -49828779 - AluSx SINE Alu -23 289 1 482 117 0 64 chr15 35866980 35867074 -49828680 - FLAM_A SINE Alu -1 141 54 647 165 37 0 chr15 35867093 35867202 -49828552 - FLAM_C SINE Alu -19 124 12 2269 83 0 20 chr15 35867291 35867593 -49828161 + AluY SINE Alu 1 296 -15 1272 220 11 7 chr15 35867958 35868231 -49827523 - AluJb SINE Alu -11 301 28 201 276 105 13 chr15 35868996 35869072 -49826682 - MER5B DNA MER1_type -6 172 90 420 299 49 0 chr15 35869361 35869505 -49826249 - MIR3 SINE MIR -24 184 34 357 314 83 30 chr15 35871476 35871645 -49824109 - MER5A DNA MER1_type -2 187 10 229 296 37 12 chr15 35872194 35872275 -49823479 + MIR SINE MIR 109 191 -71 681 260 117 36 chr15 35872463 35872848 -49822906 - L1ME4a LINE L1 -27 6094 5679 6563 71 20 33 chr15 35872865 35873853 -49821901 - SVA Other Other 0 1386 433 4110 62 28 2 chr15 35873902 35874434 -49821320 - SVA Other Other -645 741 196 2119 94 56 14 chr15 35874536 35874824 -49820930 + AluSp SINE Alu 4 303 -10 2188 119 0 16 chr15 35874876 35875187 -49820567 + AluSx SINE Alu 7 312 0 21 36 0 0 chr15 35875333 35875361 -49820393 + AT_rich Low_complexity Low_complexity 1 28 0 2394 66 7 3 chr15 35875530 35875832 -49819922 - AluSc SINE Alu -6 303 1 1851 183 0 3 chr15 35877013 35877324 -49818430 - AluJo SINE Alu -2 310 1 215 270 0 40 chr15 35878005 35878079 -49817675 - MIR3 SINE MIR -17 191 121 1394 216 11 4 chr15 35878439 35878708 -49817046 - AluJo SINE Alu -35 277 7 640 207 129 0 chr15 35880029 35880169 -49815585 - MER5A DNA MER1_type -28 161 4 3694 190 107 16 chr15 35880408 35881044 -49814710 + Tigger6a DNA MER2_type 2 810 -787 2159 125 0 6 chr15 35881044 35881356 -49814398 + AluSx SINE Alu 1 310 -2 3694 190 107 16 chr15 35881356 35881657 -49814097 + Tigger6a DNA MER2_type 810 1082 -1 266 264 28 0 chr15 35881660 35881732 -49814022 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1692 176 0 34 chr15 35882765 35883083 -49812671 + AluSx SINE Alu 1 308 0 1028 85 0 0 chr15 35883094 35883223 -49812531 + AluSq/x SINE Alu 1 129 -184 268 320 88 17 chr15 35883459 35883640 -49812114 + L2 LINE L2 3120 3313 0 1253 178 27 66 chr15 35883923 35884264 -49811490 - MER65A LTR ERV1 0 445 53 2612 84 22 3 chr15 35884264 35884634 -49811120 - L1PA10 LINE L1 -3 6165 5789 1253 178 27 66 chr15 35884634 35884686 -49811068 - MER65A LTR ERV1 -392 53 1 21 71 0 0 chr15 35885694 35885736 -49810018 + AT_rich Low_complexity Low_complexity 1 42 0 390 279 40 45 chr15 35885945 35886146 -49809608 - L1ME LINE L1 -374 5747 5548 305 258 30 9 chr15 35886277 35886454 -49809300 - L1ME LINE L1 -741 5429 5295 1739 103 117 32 chr15 35886465 35886746 -49809008 + AluSq SINE Alu 1 305 -8 2291 110 0 3 chr15 35887676 35887984 -49807770 + AluSx SINE Alu 1 307 -5 406 127 0 0 chr15 35888090 35888161 -49807593 + L1MB2 LINE L1 6070 6140 -31 1629 188 37 20 chr15 35888243 35888541 -49807213 + AluJb SINE Alu 3 305 -7 1061 196 71 5 chr15 35888745 35888969 -49806785 - AluJo SINE Alu -51 261 23 458 293 155 55 chr15 35888969 35889469 -49806285 + L2 LINE L2 2754 3309 -4 346 324 17 74 chr15 35889632 35889808 -49805946 - L1ME3A LINE L1 -1 6169 6004 2093 114 13 7 chr15 35889937 35890235 -49805519 - AluSq SINE Alu -13 300 1 717 239 125 11 chr15 35890237 35890509 -49805245 - L1ME3A LINE L1 -223 5947 5645 920 194 107 0 chr15 35890509 35890725 -49805029 - Tigger5 DNA MER2_type 0 2323 2085 272 222 0 16 chr15 35890746 35890809 -49804945 - Tigger5 DNA MER2_type -2261 62 1 636 157 20 68 chr15 35890809 35890956 -49804798 - L1ME3A LINE L1 -524 5646 5507 201 132 0 0 chr15 35890980 35891018 -49804736 + (GA)n Simple_repeat Simple_repeat 2 39 0 364 191 21 0 chr15 35891174 35891268 -49804486 - L1MA8 LINE L1 -4 6287 6192 233 383 0 12 chr15 35891368 35891449 -49804305 + polypurine Low_complexity Low_complexity 3 82 0 1519 148 88 31 chr15 35892256 35892608 -49803146 + THE1C LTR MaLR 1 372 -3 249 240 173 0 chr15 35892904 35892979 -49802775 - L2 LINE L2 -1 3271 3184 1851 154 14 3 chr15 35893118 35893410 -49802344 - AluJb SINE Alu -2 310 16 306 222 89 11 chr15 35893459 35893549 -49802205 - L1ME4a LINE L1 -4 6117 6021 937 204 0 0 chr15 35894495 35894662 -49801092 - FAM SINE Alu -12 173 7 427 257 29 0 chr15 35896037 35896142 -49799612 + MIR SINE MIR 141 248 -14 21 0 0 0 chr15 35896970 35896991 -49798763 + AT_rich Low_complexity Low_complexity 1 21 0 2347 105 0 7 chr15 35897396 35897700 -49798054 + AluSg SINE Alu 1 302 -8 2259 104 3 0 chr15 35897723 35898022 -49797732 + AluSx SINE Alu 1 300 -12 308 205 193 0 chr15 35898483 35898566 -49797188 - MIR SINE MIR -115 147 49 780 187 13 19 chr15 35898662 35898817 -49796937 - FRAM SINE Alu -30 146 1 2885 169 125 85 chr15 35898818 35899407 -49796347 - L1MC3 LINE L1 -6 7779 7215 271 197 30 15 chr15 35899407 35899473 -49796281 - MLT1F1 LTR MaLR -456 111 45 2885 169 125 85 chr15 35899473 35899701 -49796053 - L1MC3 LINE L1 -570 7215 6998 297 0 0 0 chr15 35899701 35899734 -49796020 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 357 24 0 0 chr15 35899733 35899775 -49795979 + (GA)n Simple_repeat Simple_repeat 1 42 0 2885 169 125 85 chr15 35899734 35899822 -49795932 - L1MC3 LINE L1 -787 6998 6812 240 59 0 0 chr15 35899822 35899856 -49795898 + (GA)n Simple_repeat Simple_repeat 1 34 0 368 115 0 16 chr15 35899857 35899918 -49795836 - L1MC3 LINE L1 -929 6856 6797 15677 66 16 1 chr15 35899929 35902716 -49793038 - L1PA6 LINE L1 -1 6153 3281 820 175 103 8 chr15 35902823 35903075 -49792679 - L1MA8 LINE L1 -22 6269 5994 * 1011 229 112 35 chr15 35903073 35903635 -49792119 - L1MC5 LINE L1 -737 7224 6633 23 78 0 0 chr15 35903867 35903918 -49791836 + AT_rich Low_complexity Low_complexity 1 51 0 515 230 132 12 chr15 35903934 35904191 -49791563 - L1M4 LINE L1 -788 5358 5071 697 182 44 25 chr15 35904268 35904427 -49791327 + MER20 DNA MER1_type 57 218 -1 750 206 61 93 chr15 35904429 35904571 -49791183 - L1M4 LINE L1 -1104 5042 4897 941 200 118 0 chr15 35904571 35904766 -49790988 + MER20 DNA MER1_type 2 219 0 750 206 61 93 chr15 35904766 35904840 -49790914 - L1M4 LINE L1 -1249 4897 4822 1946 115 7 17 chr15 35904840 35905135 -49790619 - AluSx SINE Alu -20 292 1 750 206 61 93 chr15 35905135 35905228 -49790526 - L1M4 LINE L1 -1324 4822 4742 322 158 0 0 chr15 35905238 35905295 -49790459 - L1M4 LINE L1 -1474 4672 4616 305 335 96 30 chr15 35905384 35905685 -49790069 - L1MEc LINE L1 -4162 2234 1914 442 316 154 33 chr15 35905726 35906214 -49789540 - L1MEc LINE L1 -4573 1823 1277 2930 135 36 2 chr15 35906214 35906589 -49789165 - L1MB3 LINE L1 -8 6175 5777 222 91 0 0 chr15 35906589 35906622 -49789132 + (TG)n Simple_repeat Simple_repeat 2 34 0 2930 135 36 2 chr15 35906622 35906742 -49789012 - L1MB3 LINE L1 -406 5777 5663 21 36 0 0 chr15 35907123 35907151 -49788603 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 35908736 35908762 -49786992 + (TG)n Simple_repeat Simple_repeat 2 27 0 2077 130 16 3 chr15 35908779 35909086 -49786668 - AluSq SINE Alu -2 311 1 2084 150 0 0 chr15 35909428 35909722 -49786032 + AluSx SINE Alu 1 294 -18 1958 82 0 7 chr15 35910391 35910660 -49785094 + L1PA8 LINE L1 5906 6172 0 516 314 99 0 chr15 35911824 35912015 -49783739 + MIR SINE MIR 8 217 -45 2093 132 0 3 chr15 35912102 35912397 -49783357 - AluSx SINE Alu -18 294 1 800 209 79 0 chr15 35912489 35912666 -49783088 + MIR SINE MIR 72 262 0 571 279 146 17 chr15 35912726 35913013 -49782741 - L2 LINE L2 0 3313 2990 21 0 0 0 chr15 35913013 35913034 -49782720 + AT_rich Low_complexity Low_complexity 1 21 0 321 284 71 24 chr15 35913288 35913415 -49782339 + L1MEd LINE L1 3 135 -5984 521 279 17 41 chr15 35914497 35914669 -49781085 - MIR SINE MIR -5 257 90 2165 135 22 8 chr15 35917603 35917958 -49777796 + MER46B DNA MER2_type 1 235 -1 2331 87 0 0 chr15 35918651 35918940 -49776814 + AluY SINE Alu 1 289 -22 2035 130 7 7 chr15 35920361 35920653 -49775101 + AluSq SINE Alu 1 292 -21 28 29 0 0 chr15 35921125 35921160 -49774594 + AT_rich Low_complexity Low_complexity 1 35 0 194 302 0 0 chr15 35921219 35921262 -49774492 + MIR SINE MIR 59 101 -161 1687 178 3 43 chr15 35921269 35921573 -49774181 - AluJo SINE Alu -20 292 1 266 200 271 14 chr15 35921741 35921811 -49773943 + MER5A DNA MER1_type 9 96 -93 23 0 0 29 chr15 35923324 35923340 -49772414 + AT_rich Low_complexity Low_complexity 1 16 -17 2072 114 3 7 chr15 35923340 35923629 -49772125 - AluSx SINE Alu -24 288 1 23 0 0 29 chr15 35923629 35923646 -49772108 + AT_rich Low_complexity Low_complexity 16 33 0 1330 106 0 30 chr15 35923855 35924053 -49771701 - AluY SINE Alu -6 305 114 1914 156 16 0 chr15 35924599 35924906 -49770848 - AluJb SINE Alu 0 312 1 2367 94 3 0 chr15 35924983 35925282 -49770472 - AluSp SINE Alu -13 300 1 2337 53 7 0 chr15 35925293 35925598 -49770156 - AluY SINE Alu 0 307 1 2116 161 99 4 chr15 35925600 35926032 -49769722 - L1MA4 LINE L1 -44 6256 5776 423 0 0 0 chr15 35926032 35926079 -49769675 + (TG)n Simple_repeat Simple_repeat 2 48 0 2116 161 99 4 chr15 35926079 35926111 -49769643 - L1MA4 LINE L1 -524 5776 5748 279 225 133 33 chr15 35926406 35926526 -49769228 - MIR SINE MIR -64 198 67 2207 111 7 0 chr15 35926809 35927107 -49768647 + AluSq SINE Alu 1 300 -13 192 77 0 0 chr15 35927107 35927133 -49768621 + (GA)n Simple_repeat Simple_repeat 1 26 0 2391 57 3 10 chr15 35927214 35927512 -49768242 + AluY SINE Alu 1 296 -15 2024 116 3 0 chr15 35927704 35927988 -49767766 - AluY SINE Alu -26 285 1 2222 109 0 19 chr15 35928109 35928422 -49767332 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr15 35928422 35928459 -49767295 + AT_rich Low_complexity Low_complexity 1 37 0 2019 220 44 24 chr15 35928882 35929377 -49766377 - MLT1D LTR MaLR 0 505 1 2170 92 10 7 chr15 35929427 35929719 -49766035 + AluSg SINE Alu 1 293 -17 290 306 0 0 chr15 35929922 35930007 -49765747 + MIR3 SINE MIR 121 205 -3 1561 185 112 62 chr15 35930115 35930596 -49765158 - MLT1D LTR MaLR 0 505 1 416 328 119 4 chr15 35931158 35931393 -49764361 + MIR SINE MIR 1 262 0 1402 159 16 118 chr15 35932585 35932949 -49762805 - MER7A DNA MER2_type -1 345 21 2125 109 10 7 chr15 35934310 35934604 -49761150 + AluSx SINE Alu 1 295 -17 239 247 5 93 chr15 35934717 35934934 -49760820 + CT-rich Low_complexity Low_complexity 1 197 0 2199 111 0 13 chr15 35936263 35936561 -49759193 - AluSg SINE Alu -16 294 1 1854 156 28 0 chr15 35936690 35936979 -49758775 + AluJb SINE Alu 1 297 -15 977 123 0 0 chr15 35937959 35938089 -49757665 + FRAM SINE Alu 23 152 -24 430 302 47 0 chr15 35938303 35938452 -49757302 + L2 LINE L2 3158 3313 0 753 151 220 25 chr15 35939201 35939360 -49756394 - MLT1F1 LTR MaLR 0 567 378 353 134 256 12 chr15 35939360 35939442 -49756312 - MLT1F1 LTR MaLR -461 106 5 2454 63 0 0 chr15 35940170 35940457 -49755297 + AluY SINE Alu 1 287 -24 205 294 188 12 chr15 35941393 35941478 -49754276 - L2 LINE L2 -39 3233 3134 563 198 0 18 chr15 35941688 35941799 -49753955 + MER47A DNA MER2_type 11 119 -247 416 168 0 192 chr15 35941802 35941870 -49753884 + MER47A DNA MER2_type 266 301 -2022 525 260 31 0 chr15 35941870 35941997 -49753757 - FLAM_C SINE Alu -2 131 1 416 168 0 192 chr15 35941997 35942053 -49753701 + MER47A DNA MER2_type 301 366 0 1344 167 139 57 chr15 35942459 35942825 -49752929 + MSTD LTR MaLR 1 396 0 973 67 8 0 chr15 35942914 35943034 -49752720 + AluSq/x SINE Alu 3 123 -190 673 290 81 38 chr15 35943426 35943825 -49751929 - L1MC4a LINE L1 -218 5903 5464 278 290 69 47 chr15 35944032 35944376 -49751378 - L2 LINE L2 -185 3087 2661 183 244 0 0 chr15 35944514 35944555 -49751199 - L2 LINE L2 -8 3305 3265 2383 96 0 7 chr15 35944642 35944945 -49750809 - AluSc SINE Alu -7 302 2 2338 88 0 10 chr15 35945357 35945664 -49750090 - AluY SINE Alu -7 304 1 424 257 0 0 chr15 35945759 35945833 -49749921 + MER58 DNA MER1_type 1 74 -312 466 258 196 38 chr15 35945957 35946166 -49749588 + MLT1G1 LTR MaLR 309 590 -5 1493 191 7 14 chr15 35946254 35946531 -49749223 + AluJo SINE Alu 1 275 -37 240 254 15 0 chr15 35946562 35946629 -49749125 + MIR3 SINE MIR 138 205 -3 197 247 22 90 chr15 35946643 35946732 -49749022 - L2 LINE L2 -6 3266 3184 306 0 0 0 chr15 35947798 35947832 -49747922 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr15 35947891 35947915 -49747839 + (CA)n Simple_repeat Simple_repeat 2 25 0 301 40 0 122 chr15 35947975 35948049 -49747705 + (TC)n Simple_repeat Simple_repeat 1 65 0 326 23 23 0 chr15 35948108 35948151 -49747603 + (CA)n Simple_repeat Simple_repeat 2 45 0 468 0 0 0 chr15 35948207 35948259 -49747495 + (CA)n Simple_repeat Simple_repeat 2 53 0 225 0 0 0 chr15 35948654 35948679 -49747075 + (A)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr15 35948969 35948990 -49746764 + (CGGGG)n Simple_repeat Simple_repeat 2 22 0 429 191 181 0 chr15 35950815 35950920 -49744834 + FLAM_A SINE Alu 2 125 -8 412 215 31 92 chr15 35951666 35951829 -49743925 - L2 LINE L2 -3 3310 3158 2162 129 0 0 chr15 35952308 35952617 -49743137 - AluSx SINE Alu -3 309 1 220 224 0 35 chr15 35953169 35953227 -49742527 - L2 LINE L2 -23 3290 3235 189 0 0 0 chr15 35954070 35954091 -49741663 + (T)n Simple_repeat Simple_repeat 1 21 0 476 56 125 14 chr15 35954650 35954722 -49741032 - MADE1 DNA Mariner 0 80 1 248 319 0 21 chr15 35955787 35955881 -49739873 + MIR3 SINE MIR 9 100 -108 183 129 0 0 chr15 35956266 35956297 -49739457 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1348 120 32 23 chr15 35958080 35958297 -49737457 + AluJo SINE Alu 86 304 -8 802 161 0 35 chr15 35958303 35958446 -49737308 + FLAM_C SINE Alu 6 143 0 490 132 40 0 chr15 35958577 35958653 -49737101 + AluJo SINE Alu 58 136 -176 804 192 6 1 chr15 35958655 35958813 -49736941 - MER33 DNA MER1_type -250 74 1 2340 75 7 0 chr15 35958831 35959125 -49736629 - AluSq SINE Alu -17 296 1 1385 177 121 0 chr15 35959136 35959468 -49736286 - L1MC1 LINE L1 -18 6315 5917 2301 106 0 6 chr15 35961053 35961364 -49734390 - AluSc SINE Alu 0 309 1 1812 148 7 14 chr15 35963221 35963531 -49732223 + AluJb SINE Alu 1 308 0 644 168 11 28 chr15 35964462 35964641 -49731113 + CT-rich Low_complexity Low_complexity 1 176 0 440 157 112 0 chr15 35965506 35965595 -49730159 - MER94 DNA DNA -34 100 2 2240 109 3 3 chr15 35965824 35966128 -49729626 - AluSp SINE Alu -9 304 1 186 43 0 0 chr15 35966133 35966156 -49729598 + (T)n Simple_repeat Simple_repeat 1 23 0 497 304 138 18 chr15 35966248 35966472 -49729282 + MIR SINE MIR 2 252 -10 204 200 0 0 chr15 35966480 35966525 -49729229 + (CA)n Simple_repeat Simple_repeat 2 46 0 2371 100 0 0 chr15 35967342 35967651 -49728103 - AluSg1 SINE Alu 0 309 1 201 94 0 0 chr15 35967651 35967683 -49728071 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2080 124 3 0 chr15 35967684 35967966 -49727788 - AluSx SINE Alu -29 283 1 538 208 0 17 chr15 35968313 35968433 -49727321 - L1MB8 LINE L1 -1 6177 6060 2007 115 0 47 chr15 35968532 35968828 -49726926 - AluSx SINE Alu -14 298 17 392 235 12 0 chr15 35968896 35968977 -49726777 + Tigger1 DNA MER2_type 1 82 -2336 1122 102 102 10 chr15 35969001 35969197 -49726557 + Tigger1 DNA MER2_type 2205 2418 0 249 144 10 144 chr15 35969201 35969305 -49726449 + L1ME4a LINE L1 6021 6110 -11 2332 80 7 13 chr15 35970252 35970553 -49725201 - AluSp SINE Alu -14 299 1 245 325 17 26 chr15 35972862 35972979 -49722775 - MIR SINE MIR -66 196 81 1278 214 119 49 chr15 35973535 35973694 -49722060 - LTR37B LTR ERV1 0 468 322 1375 149 168 19 chr15 35973694 35973956 -49721798 + AluJo SINE Alu 1 301 -1 1278 214 119 49 chr15 35973956 35974225 -49721529 - LTR37B LTR ERV1 -146 322 10 537 284 31 10 chr15 35974277 35974471 -49721283 + MIR SINE MIR 51 248 -14 2147 100 11 0 chr15 35974474 35974778 -49720976 - AluSp SINE Alu 0 308 2 28 29 0 0 chr15 35975939 35975974 -49719780 + AT_rich Low_complexity Low_complexity 1 35 0 1041 142 0 6 chr15 35976889 35977062 -49718692 - Charlie3 DNA MER1_type -2431 279 115 389 236 0 0 chr15 35977151 35977240 -49718514 - MIR SINE MIR 0 262 174 866 193 30 0 chr15 35978067 35978233 -49717521 - AluSg/x SINE Alu -2 310 140 243 264 0 0 chr15 35979177 35979230 -49716524 + A-rich Low_complexity Low_complexity 3 55 0 2395 64 7 0 chr15 35980842 35981149 -49714605 - AluSp SINE Alu 0 309 1 2461 74 0 3 chr15 35983317 35983613 -49712141 - AluY SINE Alu -16 295 1 721 112 0 45 chr15 35984466 35984600 -49711154 - L1MA4 LINE L1 0 6300 6173 2086 93 69 3 chr15 35985838 35986128 -49709626 - AluSc SINE Alu 0 309 1 1982 201 54 14 chr15 35986395 35986913 -49708841 - MLT1F LTR MaLR -5 537 1 25 65 0 0 chr15 35987313 35987359 -49708395 + AT_rich Low_complexity Low_complexity 1 46 0 209 200 20 0 chr15 35990148 35990198 -49705556 + L2 LINE L2 3256 3306 -7 548 88 7 95 chr15 35990403 35990707 -49705047 + (TCCC)n Simple_repeat Simple_repeat 1 277 0 350 126 92 0 chr15 35990707 35990794 -49704960 + (CCTG)n Simple_repeat Simple_repeat 2 96 0 471 233 20 0 chr15 35990798 35990948 -49704806 + CT-rich Low_complexity Low_complexity 1 153 0 781 116 0 9 chr15 35990955 35991067 -49704687 - L1PB1 LINE L1 -13 6138 6028 1903 130 84 3 chr15 35991067 35991390 -49704364 - MER46B DNA MER2_type -12 224 1 2515 59 0 7 chr15 35991882 35992187 -49703567 - AluY SINE Alu -8 303 1 618 207 195 17 chr15 35993418 35993473 -49702281 - MER3 DNA MER1_type 0 209 165 195 42 0 0 chr15 35993473 35993497 -49702257 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 618 207 195 17 chr15 35993497 35993615 -49702139 - MER3 DNA MER1_type -44 165 5 400 252 39 19 chr15 35995435 35995538 -49700216 - MER91C DNA MER1_type -35 105 1 1678 96 0 8 chr15 35996850 35997067 -49698687 - L1P LINE L1 -4105 2041 1825 1902 159 0 0 chr15 35997067 35997350 -49698404 - AluSx SINE Alu -29 283 1 1678 96 0 8 chr15 35997350 35997372 -49698382 - L1P LINE L1 -4321 1825 1804 * 2819 186 19 45 chr15 35997351 35997775 -49697979 - L1MC2 LINE L1 -493 5851 5418 2244 125 0 0 chr15 35997775 35998087 -49697667 - AluSx SINE Alu 0 312 1 2819 186 19 45 chr15 35998087 35998545 -49697209 - L1MC2 LINE L1 -926 5418 4999 1838 144 26 30 chr15 35998545 35998850 -49696904 - AluSx SINE Alu -8 304 1 2819 186 19 45 chr15 35998850 35998948 -49696806 - L1MC2 LINE L1 -1345 4999 4900 201 250 0 0 chr15 36000375 36000411 -49695343 + T-rich Low_complexity Low_complexity 3 38 0 402 141 40 10 chr15 36000429 36000528 -49695226 + CT-rich Low_complexity Low_complexity 2 103 0 2005 132 0 0 chr15 36000528 36000801 -49694953 - AluSx SINE Alu -39 273 1 207 306 0 0 chr15 36000812 36000874 -49694880 + MIR3 SINE MIR 126 187 -21 191 32 65 0 chr15 36002060 36002091 -49693663 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2107 113 0 3 chr15 36005342 36005626 -49690128 + AluSx SINE Alu 1 283 -29 290 278 11 0 chr15 36005650 36005740 -49690014 - MIR3 SINE MIR -30 178 88 * 472 238 245 0 chr15 36005738 36005885 -49689869 + MER5A DNA MER1_type 7 189 0 857 246 66 8 chr15 36006090 36006346 -49689408 + L1ME LINE L1 5553 5823 -298 252 159 0 0 chr15 36006346 36006388 -49689366 + AluJo SINE Alu 1 35 -268 249 208 83 0 chr15 36006419 36006491 -49689263 - L1M1 LINE L1 -7471 94 17 1301 181 0 62 chr15 36006497 36006756 -49688998 + AluJo SINE Alu 29 271 -41 1521 184 17 0 chr15 36006805 36007093 -49688661 - L1PB4 LINE L1 0 6156 5864 389 324 90 0 chr15 36007475 36007620 -49688134 + L2 LINE L2 3115 3272 0 234 0 0 0 chr15 36008954 36008980 -49686774 + (TCCCC)n Simple_repeat Simple_repeat 3 28 0 715 197 0 0 chr15 36008980 36009112 -49686642 - FRAM SINE Alu -10 166 35 243 330 34 25 chr15 36009227 36009345 -49686409 + L2 LINE L2 3121 3239 -33 282 289 0 0 chr15 36009379 36009455 -49686299 - MIR SINE MIR -4 258 183 24 0 0 0 chr15 36009505 36009529 -49686225 + AT_rich Low_complexity Low_complexity 1 24 0 773 186 10 93 chr15 36010564 36010684 -49685070 - MER5A DNA MER1_type -2 187 59 2512 104 6 8 chr15 36010684 36011040 -49684714 + THE1A LTR MaLR 1 355 0 1918 138 10 10 chr15 36011047 36011337 -49684417 - AluJo SINE Alu -22 290 1 773 186 10 93 chr15 36011337 36011412 -49684342 - MER5A DNA MER1_type -136 53 1 636 171 264 0 chr15 36011772 36011912 -49683842 - MER45A DNA AcHobo 0 178 2 182 343 0 0 chr15 36012239 36012306 -49683448 - MIR SINE MIR -147 115 49 1932 148 45 34 chr15 36012371 36012728 -49683026 + THE1B LTR MaLR 1 361 -3 387 257 69 40 chr15 36013158 36013333 -49682421 + MIR SINE MIR 40 219 -43 726 200 27 0 chr15 36013681 36013831 -49681923 + L1 LINE L1 4109 4262 -1884 276 225 49 41 chr15 36014729 36014846 -49680908 + MIR SINE MIR 25 147 -62 525 187 0 0 chr15 36014992 36015131 -49680623 + CT-rich Low_complexity Low_complexity 3 141 0 529 135 208 0 chr15 36015133 36015229 -49680525 - FRAM SINE Alu -16 160 45 770 93 19 0 chr15 36015329 36015436 -49680318 + MSTA LTR MaLR 320 428 0 * 1462 169 0 16 chr15 36015436 36015677 -49680077 - MSTA LTR MaLR -191 237 1 2664 39 0 3 chr15 36016116 36016450 -49679304 + AluY SINE Alu 1 333 0 337 376 48 0 chr15 36016927 36017137 -49678617 + L2 LINE L2 2439 2658 -656 2295 87 10 0 chr15 36017498 36017798 -49677956 - AluSp SINE Alu -10 303 1 2768 86 0 23 chr15 36017813 36018198 -49677556 - L1PA6 LINE L1 -11 6143 5768 888 277 60 31 chr15 36018581 36018967 -49676787 - L1ME3A LINE L1 -219 5951 5555 275 326 11 0 chr15 36018967 36019059 -49676695 + L2 LINE L2 3175 3267 -5 2755 168 43 38 chr15 36019716 36019811 -49675943 - L1MD3 LINE L1 -12 7983 7890 2485 80 6 0 chr15 36019811 36020122 -49675632 - AluSp SINE Alu 0 313 1 2755 168 43 38 chr15 36020122 36020604 -49675150 - L1MD3 LINE L1 -105 7890 7403 703 197 0 0 chr15 36020606 36020728 -49675026 - MLT1F1 LTR MaLR -445 122 1 297 148 66 0 chr15 36020730 36020791 -49674963 - L1MD3 LINE L1 -719 7276 7212 588 313 78 9 chr15 36021529 36021759 -49673995 - LTR67 LTR ERVL -310 247 2 472 244 24 24 chr15 36021821 36021944 -49673810 - L2 LINE L2 0 3313 3191 4670 253 107 48 chr15 36021946 36022096 -49673658 + HAL1 LINE L1 229 369 -2138 1039 171 9 55 chr15 36022096 36022313 -49673441 + MER3 DNA MER1_type 3 209 0 4670 253 107 48 chr15 36022313 36022916 -49672838 + HAL1 LINE L1 369 935 -1572 2345 92 3 3 chr15 36022916 36023220 -49672534 + AluY SINE Alu 1 304 -7 4670 253 107 48 chr15 36023220 36023555 -49672199 + HAL1 LINE L1 935 1249 -1258 2538 133 62 5 chr15 36023555 36023960 -49671794 + MSTA LTR MaLR 1 428 0 4670 253 107 48 chr15 36023960 36024253 -49671501 + HAL1 LINE L1 1249 1523 -984 3392 84 0 22 chr15 36024253 36024707 -49671047 + MLT2A1 LTR ERVL 1 444 0 4670 253 107 48 chr15 36024707 36025322 -49670432 + HAL1 LINE L1 1523 2347 -160 5187 154 17 22 chr15 36025323 36026208 -49669546 + MER54A LTR ERVL 6 873 -28 901 205 0 0 chr15 36026210 36026371 -49669383 + FRAM SINE Alu 4 164 -2 343 67 0 0 chr15 36026404 36026449 -49669305 + MER54B LTR ERVL 749 793 0 443 230 142 27 chr15 36026450 36026598 -49669156 + HAL1 LINE L1 2343 2507 0 2363 76 0 13 chr15 36026705 36027006 -49668748 + AluY SINE Alu 1 297 -14 7756 27 5 0 chr15 36027070 36027997 -49667757 + L1PA3 LINE L1 5220 6150 -5 541 291 98 59 chr15 36028215 36028376 -49667378 + MLT1K LTR MaLR 113 266 -322 249 33 0 0 chr15 36028376 36028406 -49667348 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 541 291 98 59 chr15 36028406 36028687 -49667067 + MLT1K LTR MaLR 266 585 -3 342 78 94 0 chr15 36028756 36028820 -49666934 - L1MA5 LINE L1 -22 6278 6209 1801 153 17 10 chr15 36030528 36030823 -49664931 - AluJb SINE Alu -15 297 1 265 250 46 28 chr15 36031055 36031163 -49664591 + CT-rich Low_complexity Low_complexity 4 113 0 1659 191 10 0 chr15 36031685 36031978 -49663776 + AluJo SINE Alu 1 296 -16 381 322 11 57 chr15 36032032 36032209 -49663545 - L3 LINE CR1 -295 1282 1114 2072 135 0 0 chr15 36032371 36032659 -49663095 - AluSc SINE Alu -21 288 1 2094 147 0 0 chr15 36032671 36032977 -49662777 - AluSx SINE Alu -6 306 1 2798 85 6 0 chr15 36033035 36033387 -49662367 + THE1A LTR MaLR 2 355 0 12268 93 6 5 chr15 36033387 36034961 -49660793 + THE1A-int LTR MaLR 1 1576 -4 2872 82 8 0 chr15 36034964 36035316 -49660438 + THE1A LTR MaLR 1 355 0 199 344 10 10 chr15 36035770 36035866 -49659888 + MIR SINE MIR 153 248 -14 314 264 56 42 chr15 36036256 36036400 -49659354 + MIR SINE MIR 112 257 -5 249 33 0 0 chr15 36036759 36036789 -49658965 + (ATG)n Simple_repeat Simple_repeat 3 32 0 363 282 0 55 chr15 36036795 36036905 -49658849 - L2 LINE L2 -21 3251 3148 273 204 0 0 chr15 36036889 36036938 -49658816 + L2 LINE L2 3251 3299 -14 * 396 0 0 0 chr15 36037496 36037540 -49658214 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 295 73 11 chr15 36038311 36038482 -49657272 + MIR SINE MIR 32 212 -50 592 207 101 71 chr15 36038505 36038674 -49657080 + MER69A DNA AcHobo 4 177 0 300 274 74 84 chr15 36039667 36039857 -49655897 - L1M2a LINE L1 -6459 709 522 1668 162 3 37 chr15 36040044 36040340 -49655414 - AluJb SINE Alu -12 300 15 875 241 30 5 chr15 36040638 36040837 -49654917 - MER63A DNA MER1_type 0 210 7 246 275 165 11 chr15 36040969 36041060 -49654694 - MIR SINE MIR 0 262 158 1350 148 0 0 chr15 36041076 36041279 -49654475 - AluSq SINE Alu -15 298 96 201 312 24 88 chr15 36041730 36041785 -49653969 + L2 LINE L2 3192 3249 -64 2406 74 0 7 chr15 36041785 36042084 -49653670 - AluY SINE Alu -14 297 1 201 312 24 88 chr15 36042084 36042153 -49653601 + L2 LINE L2 3249 3308 -5 29 28 0 0 chr15 36042224 36042260 -49653494 + AT_rich Low_complexity Low_complexity 1 36 0 2925 97 57 102 chr15 36043400 36044037 -49651717 + MER4B LTR ERV1 1 779 0 4132 140 34 24 chr15 36044482 36045183 -49650571 + MER50 LTR ERV1 1 708 -26 865 198 117 15 chr15 36046463 36046660 -49649094 - AluJo SINE Alu -11 301 85 381 138 17 0 chr15 36046660 36046718 -49649036 - AluSx SINE Alu -52 248 190 1066 110 0 14 chr15 36046719 36046864 -49648890 - AluSx SINE Alu -170 143 1 863 151 8 0 chr15 36047383 36047509 -49648245 - FLAM_C SINE Alu -16 127 1 194 54 0 54 chr15 36047518 36047555 -49648199 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 280 241 38 25 chr15 36048942 36049021 -49646733 - L2 LINE L2 0 3272 3193 778 236 140 36 chr15 36049513 36049848 -49645906 - L3 LINE CR1 -704 873 504 349 275 42 33 chr15 36050026 36050146 -49645608 + L2 LINE L2 2250 2370 -944 325 354 94 39 chr15 36050159 36050547 -49645207 + L2 LINE L2 2633 3046 -226 609 264 54 73 chr15 36050913 36051283 -49644471 + MLT1J LTR MaLR 1 323 -123 484 281 103 90 chr15 36051515 36052028 -49643726 - L1ME2 LINE L1 -279 5885 5366 28 19 0 56 chr15 36052050 36052104 -49643650 + AT_rich Low_complexity Low_complexity 1 51 0 4091 143 16 2 chr15 36052106 36052727 -49643027 - L1PA16 LINE L1 -14 6152 5523 782 85 19 0 chr15 36052744 36052850 -49642904 - L1PB1 LINE L1 -1 6150 6043 268 292 60 27 chr15 36052895 36053080 -49642674 - L1ME2 LINE L1 -891 5255 5065 309 208 26 13 chr15 36053100 36053177 -49642577 + L1MC2 LINE L1 6254 6331 -13 694 257 80 46 chr15 36053199 36053825 -49641929 + L1MEc LINE L1 966 1612 -4784 * 1822 162 16 38 chr15 36053809 36054180 -49641574 + L1MC2 LINE L1 5796 6158 -186 486 272 0 40 chr15 36054732 36054857 -49640897 - MER5B DNA MER1_type -3 175 56 2074 109 7 3 chr15 36054859 36055142 -49640612 - AluSx SINE Alu -28 284 1 263 279 163 41 chr15 36055228 36055400 -49640354 + MIR SINE MIR 13 205 -57 1996 141 12 29 chr15 36055537 36055889 -49639865 + MLT2A2 LTR ERVL 1 309 -144 16610 146 34 7 chr15 36055889 36057580 -49638174 + L1PBa LINE L1 378 2023 -4839 2360 103 0 0 chr15 36057580 36057890 -49637864 + AluSg SINE Alu 1 310 0 2384 100 3 0 chr15 36057895 36058204 -49637550 + AluSp SINE Alu 1 310 -3 16610 146 34 7 chr15 36058204 36060718 -49635036 + L1PBa LINE L1 2026 4700 -2162 805 163 58 41 chr15 36060827 36060999 -49634755 - AluJo SINE Alu -137 175 1 468 107 24 0 chr15 36061628 36061712 -49634042 - L1MB4 LINE L1 0 6180 6095 1966 134 0 3 chr15 36061760 36062080 -49633674 - AluSx SINE Alu 0 319 1 1114 282 19 39 chr15 36062429 36062841 -49632913 - MLT1I LTR MaLR -5 404 1 403 296 97 51 chr15 36062930 36063146 -49632608 - MIR SINE MIR -3 259 34 358 320 76 26 chr15 36064425 36064601 -49631153 - MIR SINE MIR -70 192 20 309 289 76 137 chr15 36064637 36064952 -49630802 - L2 LINE L2 -5 3267 2972 1482 154 80 25 chr15 36064961 36065247 -49630507 + AluJb SINE Alu 11 312 0 894 290 116 55 chr15 36065469 36065776 -49629978 - L2 LINE L2 -906 2408 2121 1921 153 3 0 chr15 36065776 36066064 -49629690 + AluSx SINE Alu 1 289 -23 894 290 116 55 chr15 36066064 36066483 -49629271 - L2 LINE L2 -1193 2121 1638 453 275 23 0 chr15 36066719 36066850 -49628904 - MIR SINE MIR -115 147 14 253 288 45 18 chr15 36068825 36068936 -49626818 - MIR SINE MIR -115 147 34 254 342 0 0 chr15 36069075 36069154 -49626600 + L3 LINE CR1 1046 1124 -453 189 318 79 117 chr15 36069387 36069427 -49626327 + L3 LINE CR1 1133 1173 -404 2287 116 40 83 chr15 36069427 36069580 -49626174 - MER57A LTR ERV1 0 403 245 1879 140 13 32 chr15 36069580 36069895 -49625859 + AluSx SINE Alu 1 309 -3 2287 116 40 83 chr15 36069895 36070162 -49625592 - MER57A LTR ERV1 -158 245 1 189 318 79 117 chr15 36070162 36070539 -49625215 + L3 LINE CR1 1173 1534 -43 2086 90 0 60 chr15 36070576 36070900 -49624854 + AluSx SINE Alu 1 306 0 1753 108 42 0 chr15 36070931 36071190 -49624564 - L1MA2 LINE L1 0 6304 6035 21 0 0 0 chr15 36071204 36071225 -49624529 + AT_rich Low_complexity Low_complexity 1 21 0 363 267 33 0 chr15 36072099 36072189 -49623565 + L2 LINE L2 3178 3270 -2 1556 90 0 5 chr15 36072751 36072952 -49622802 - L1PA7 LINE L1 -13 6141 5942 1280 236 41 16 chr15 36072984 36073463 -49622291 + MLT1E LTR MaLR 1 585 -8 405 232 36 9 chr15 36073834 36073946 -49621808 + MLT1I LTR MaLR 60 174 -235 2208 105 40 53 chr15 36074548 36074928 -49620826 + THE1C LTR MaLR 1 375 0 1065 210 73 86 chr15 36077160 36077531 -49618223 + MLT1A2 LTR MaLR 7 372 -2 845 269 144 41 chr15 36077532 36077970 -49617784 - HAL1 LINE L1 -1693 814 332 2334 96 7 0 chr15 36077972 36078265 -49617489 + AluSc SINE Alu 1 295 -14 278 276 97 67 chr15 36078421 36079134 -49616620 + L1MC4a LINE L1 4369 5102 -1044 1868 139 0 0 chr15 36079242 36079501 -49616253 + AluSx SINE Alu 24 282 -30 1296 239 84 106 chr15 36079634 36080486 -49615268 + L1MC4a LINE L1 5340 6173 -1635 303 226 48 0 chr15 36081077 36081161 -49614593 - L1ME4a LINE L1 -3 6118 6031 269 199 88 29 chr15 36081233 36081369 -49614385 - L1ME4a LINE L1 -238 5883 5740 5922 205 129 61 chr15 36081546 36084353 -49611401 - L1MCa LINE L1 -3396 3030 29 19621 73 11 8 chr15 36084680 36088184 -49607570 - L1PA6 LINE L1 0 6154 2640 18870 121 21 23 chr15 36088290 36091571 -49604183 - L1P LINE L1 -2861 3285 11 3908 188 31 4 chr15 36091774 36092536 -49603218 - LTR39 LTR ERV1 0 783 1 296 280 51 77 chr15 36094002 36094157 -49601597 - MIR SINE MIR -59 149 32 2256 129 7 0 chr15 36094840 36095149 -49600605 - AluSx SINE Alu -1 311 1 586 208 101 82 chr15 36095295 36095336 -49600418 - MER58C DNA MER1_type -2205 215 176 288 0 0 0 chr15 36095336 36095368 -49600386 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2079 99 0 38 chr15 36095374 36095667 -49600087 - AluSx SINE Alu -30 282 1 586 208 101 82 chr15 36095667 36095825 -49599929 - MER58C DNA MER1_type -2248 172 5 406 268 79 49 chr15 36096070 36096234 -49599520 + MIR SINE MIR 94 262 0 504 267 85 23 chr15 36096560 36096736 -49599018 - MIR SINE MIR -18 244 58 248 356 30 8 chr15 36096999 36097131 -49598623 + MIR SINE MIR 18 152 -56 930 255 66 29 chr15 36097541 36097890 -49597864 - MER21B LTR ERV1 -124 739 378 332 317 39 19 chr15 36099064 36099323 -49596431 + MER34 LTR ERV1 1 264 -278 201 74 0 0 chr15 36099387 36099414 -49596340 + (T)n Simple_repeat Simple_repeat 1 27 0 200 326 116 20 chr15 36100593 36100740 -49595014 + MIR SINE MIR 32 192 -70 247 326 34 88 chr15 36101993 36102140 -49593614 - L2 LINE L2 -11 3261 3123 237 167 0 0 chr15 36102627 36102669 -49593085 + L2 LINE L2 3268 3309 -4 537 316 24 0 chr15 36102676 36102844 -49592910 - MIR SINE MIR -52 210 39 218 304 152 0 chr15 36103039 36103118 -49592636 - MIR SINE MIR -78 130 40 362 319 29 22 chr15 36103218 36103356 -49592398 + MIR3 SINE MIR 4 142 -66 318 370 90 35 chr15 36104204 36104515 -49591239 + L2 LINE L2 2568 2895 -419 825 262 110 0 chr15 36104764 36104996 -49590758 + MIR SINE MIR 6 262 0 288 173 0 80 chr15 36105016 36105091 -49590663 + MIR SINE MIR 194 262 0 405 39 0 0 chr15 36105771 36105822 -49589932 + (TG)n Simple_repeat Simple_repeat 2 52 0 2105 138 0 10 chr15 36106689 36106993 -49588761 - AluSx SINE Alu -11 301 1 498 286 108 22 chr15 36107979 36108164 -49587590 - MIR SINE MIR -15 247 47 21 0 0 0 chr15 36108405 36108426 -49587328 + AT_rich Low_complexity Low_complexity 1 21 0 304 216 0 0 chr15 36108453 36108504 -49587250 + MIR SINE MIR 55 105 -157 303 28 0 0 chr15 36109003 36109039 -49586715 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 282 0 0 chr15 36110073 36110151 -49585603 + A-rich Low_complexity Low_complexity 1 78 0 872 264 48 4 chr15 36111355 36111582 -49584172 - MIR SINE MIR -23 239 3 29 60 0 0 chr15 36111926 36111976 -49583778 + AT_rich Low_complexity Low_complexity 1 50 0 268 314 64 21 chr15 36112469 36112609 -49583145 - MER117 DNA MER1_type -51 146 1 182 263 70 0 chr15 36112642 36112699 -49583055 + MIR SINE MIR 75 135 -73 260 246 29 14 chr15 36113803 36113872 -49581882 + CT-rich Low_complexity Low_complexity 6 75 0 524 302 17 17 chr15 36113899 36114071 -49581683 - MIR SINE MIR -50 212 41 2983 106 110 12 chr15 36114229 36114711 -49581043 + MER1A DNA MER1_type 1 529 0 243 329 136 13 chr15 36114775 36114930 -49580824 + L2 LINE L2 3099 3272 0 515 331 23 42 chr15 36114937 36115189 -49580565 - MIR SINE MIR 0 262 11 360 285 65 18 chr15 36115203 36115372 -49580382 + MIR3 SINE MIR 10 188 -71 3645 65 27 0 chr15 36115402 36115891 -49579863 - L1PA8 LINE L1 -1 6171 5670 659 280 70 37 chr15 36116424 36116667 -49579087 + MIR SINE MIR 9 259 -3 21 0 0 0 chr15 36117085 36117106 -49578648 + AT_rich Low_complexity Low_complexity 1 21 0 2809 139 34 52 chr15 36117252 36117304 -49578450 - L1MA10 LINE L1 -3 6331 6280 2027 132 10 3 chr15 36117304 36117592 -49578162 + AluSx SINE Alu 1 290 -22 2809 139 34 52 chr15 36117592 36118157 -49577597 - L1MA10 LINE L1 -54 6280 5725 1842 167 86 23 chr15 36118157 36118867 -49576887 + L1MA10 LINE L1 4969 5728 -440 190 380 42 0 chr15 36119022 36119093 -49576661 - L3 LINE CR1 -15 1562 1489 1931 128 20 7 chr15 36119096 36119392 -49576362 - AluSx SINE Alu -12 300 1 305 322 141 20 chr15 36119603 36119802 -49575952 - L3 LINE CR1 -87 1490 1268 611 315 35 42 chr15 36122201 36122461 -49573293 + MIR SINE MIR 4 261 -1 198 263 105 0 chr15 36122631 36122713 -49573041 - MIR SINE MIR -70 192 101 284 267 58 50 chr15 36122915 36123035 -49572719 + MIR SINE MIR 17 137 -71 240 143 0 0 chr15 36123816 36123858 -49571896 + (TG)n Simple_repeat Simple_repeat 2 43 0 367 254 26 18 chr15 36125638 36125752 -49570002 + MIR SINE MIR 148 262 0 2456 226 94 72 chr15 36126256 36126559 -49569195 - MER69B DNA AcHobo -1420 1106 811 703 233 0 0 chr15 36126559 36126692 -49569062 - FLAM_A SINE Alu 0 133 1 2456 226 94 72 chr15 36126692 36127414 -49568340 - MER69B DNA AcHobo -1715 811 59 382 295 28 13 chr15 36127475 36127737 -49568017 - L1ME3A LINE L1 -258 6192 5926 732 239 193 0 chr15 36127742 36127939 -49567815 + MIR SINE MIR 4 238 -24 970 271 48 74 chr15 36127964 36129129 -49566625 - L1ME3A LINE L1 -520 5924 4790 476 264 84 62 chr15 36129202 36129488 -49566266 - L1MEd LINE L1 -5041 1375 949 243 0 0 0 chr15 36129499 36129526 -49566228 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr15 36129525 36129556 -49566198 + (TG)n Simple_repeat Simple_repeat 2 32 0 317 268 65 41 chr15 36129780 36129903 -49565851 + L2 LINE L2 3188 3313 0 210 244 0 0 chr15 36130095 36130140 -49565614 + GA-rich Low_complexity Low_complexity 3 47 0 180 0 0 0 chr15 36130562 36130582 -49565172 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 347 254 9 9 chr15 36131132 36131246 -49564508 + L1ME4a LINE L1 5938 6051 -70 23 33 0 0 chr15 36131294 36131324 -49564430 + AT_rich Low_complexity Low_complexity 1 30 0 1562 176 0 8 chr15 36131525 36131780 -49563974 + AluSx SINE Alu 5 257 -55 522 341 134 3 chr15 36131885 36132190 -49563564 + L2 LINE L2 2631 2975 -339 1061 69 25 19 chr15 36132240 36132400 -49563354 + L1PA13 LINE L1 6000 6160 -3 405 289 113 14 chr15 36132586 36132728 -49563026 + L2 LINE L2 3117 3272 0 408 130 0 0 chr15 36133316 36133385 -49562369 + (TCC)n Simple_repeat Simple_repeat 3 71 0 547 318 98 11 chr15 36134262 36134633 -49561121 - L2 LINE L2 -213 3059 2647 1914 161 0 3 chr15 36135049 36135348 -49560406 + AluJb SINE Alu 1 298 -14 1140 194 5 37 chr15 36138037 36138197 -49557557 - AluJo SINE Alu -18 294 141 1131 15 15 0 chr15 36138197 36138334 -49557420 - L1PA4 LINE L1 -1 6154 6016 1140 194 5 37 chr15 36138334 36138389 -49557365 - AluJo SINE Alu -171 141 86 2508 59 9 3 chr15 36139953 36140276 -49555478 - L1PA5 LINE L1 -4 6150 5826 184 293 69 0 chr15 36141327 36141385 -49554369 + L2 LINE L2 3147 3208 -64 3464 136 9 15 chr15 36141391 36141921 -49553833 - MER1A DNA MER1_type 0 527 1 275 336 86 7 chr15 36142396 36142536 -49553218 - MIR3 SINE MIR -8 200 50 1044 278 70 78 chr15 36142824 36143043 -49552711 + L2 LINE L2 2804 3023 -290 746 195 0 0 chr15 36143043 36143166 -49552588 - FLAM_C SINE Alu -9 124 2 2050 140 22 0 chr15 36143167 36143523 -49552231 - L1MC1 LINE L1 -8 6325 5962 1044 278 70 78 chr15 36143523 36143815 -49551939 + L2 LINE L2 3022 3313 0 414 337 82 28 chr15 36143813 36144068 -49551686 - L2 LINE L2 -19 3253 2985 * 626 226 87 33 chr15 36144163 36144436 -49551318 + LTR16C LTR ERVL 150 489 -2 200 350 161 15 chr15 36144447 36144584 -49551170 - L2 LINE L2 -290 2982 2826 240 111 0 0 chr15 36144672 36144708 -49551046 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr15 36145622 36145652 -49550102 + AT_rich Low_complexity Low_complexity 1 30 0 1226 222 45 48 chr15 36146142 36146276 -49549478 - L1ME2 LINE L1 0 6149 6016 2181 113 0 0 chr15 36146276 36146569 -49549185 + AluSx SINE Alu 1 293 -19 1226 222 45 48 chr15 36146569 36146951 -49548803 - L1ME2 LINE L1 -133 6016 5660 516 204 66 11 chr15 36146953 36147134 -49548620 + L1M4 LINE L1 4984 5174 -972 * 1062 224 54 4 chr15 36147131 36147390 -49548364 - L1ME2 LINE L1 -469 5678 5407 620 161 0 32 chr15 36148028 36148152 -49547602 - L1MD3 LINE L1 0 7995 7876 316 275 53 58 chr15 36149290 36149632 -49546122 - L1ME2 LINE L1 -3594 2535 2196 1180 162 8 174 chr15 36149648 36149999 -49545755 + AluJo SINE Alu 1 293 -9 368 335 138 23 chr15 36150424 36150642 -49545112 - HAL1 LINE L1 -742 1765 1523 441 263 56 26 chr15 36150654 36150886 -49544868 - L1ME3A LINE L1 -5 6165 5927 2504 87 3 0 chr15 36150904 36151216 -49544538 + AluSq SINE Alu 1 313 0 951 283 89 63 chr15 36151342 36151596 -49544158 - L1ME2 LINE L1 -4881 1238 992 1642 185 57 66 chr15 36151596 36152067 -49543687 + MLT1C LTR MaLR 1 467 0 951 283 89 63 chr15 36152067 36152206 -49543548 - L1ME2 LINE L1 -5127 992 858 1758 182 0 10 chr15 36152206 36152508 -49543246 - AluJb SINE Alu -13 299 1 951 283 89 63 chr15 36152508 36153201 -49542553 - L1ME2 LINE L1 -5261 858 123 572 248 200 5 chr15 36154101 36154311 -49541443 + MIR SINE MIR 12 262 0 24 0 0 0 chr15 36154632 36154656 -49541098 + AT_rich Low_complexity Low_complexity 1 24 0 7089 53 41 0 chr15 36154656 36155569 -49540185 - L1PA5 LINE L1 -8 6146 5227 1674 176 14 10 chr15 36158377 36158672 -49537082 + AluJb SINE Alu 1 296 -16 32 57 0 0 chr15 36158718 36158771 -49536983 + AT_rich Low_complexity Low_complexity 1 53 0 1615 196 73 3 chr15 36159157 36159498 -49536256 + MLT1A1 LTR MaLR 1 365 0 2110 132 20 7 chr15 36160681 36160985 -49534769 - AluSq SINE Alu 0 313 6 436 285 97 6 chr15 36161539 36161704 -49534050 + MIR SINE MIR 43 222 -40 2443 70 0 0 chr15 36162210 36162508 -49533246 - AluY SINE Alu -13 298 1 674 185 101 117 chr15 36163484 36163792 -49531962 + MER5C DNA MER1_type 16 318 -6 360 303 94 30 chr15 36163812 36164046 -49531708 + MIR SINE MIR 13 261 -1 4177 97 16 3 chr15 36164220 36164828 -49530926 - L1MA3 LINE L1 -7 6298 5683 536 179 66 20 chr15 36164828 36164979 -49530775 + ORSL DNA AcHobo 8 165 -110 418 303 45 17 chr15 36165918 36166096 -49529658 - MER5A DNA MER1_type -1 188 6 1140 169 22 40 chr15 36167743 36167968 -49527786 + AluJb SINE Alu 82 302 -10 892 287 87 37 chr15 36168994 36169395 -49526359 + L2 LINE L2 2893 3313 0 2040 141 0 49 chr15 36169673 36169999 -49525755 - AluSx SINE Alu -2 310 1 990 121 0 12 chr15 36170152 36170318 -49525436 + MER53 DNA DNA 26 189 0 271 180 0 0 chr15 36170462 36170512 -49525242 - MIR SINE MIR -140 122 73 316 200 144 11 chr15 36170515 36170605 -49525149 + L2 LINE L2 3116 3217 -96 2323 90 3 13 chr15 36170808 36171120 -49524634 - AluSc SINE Alu 0 309 1 474 312 85 15 chr15 36171916 36172115 -49523639 - MIR SINE MIR -42 220 8 896 52 0 0 chr15 36172126 36172241 -49523513 - L1PA5 LINE L1 0 6154 6040 489 325 24 0 chr15 36175308 36175477 -49520277 + MIR SINE MIR 73 245 -17 2256 107 3 3 chr15 36175569 36175878 -49519876 - AluSc SINE Alu 0 309 1 248 312 0 46 chr15 36176192 36176301 -49519453 - MIR SINE MIR -70 192 89 577 284 30 24 chr15 36176391 36176586 -49519168 - MIR SINE MIR -62 146 5 797 238 41 6 chr15 36176615 36176787 -49518967 - MER5A DNA MER1_type -6 183 6 2029 138 14 7 chr15 36177342 36177638 -49518116 + AluJb SINE Alu 2 299 -13 1849 183 0 3 chr15 36178492 36178798 -49516956 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 36179473 36179497 -49516257 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 391 304 145 7 chr15 36180819 36180957 -49514797 + L2 LINE L2 3115 3271 -1 961 125 0 7 chr15 36182439 36182575 -49513179 + AluSq/x SINE Alu 1 135 -177 2042 128 20 0 chr15 36182575 36182872 -49512882 + AluSx SINE Alu 1 303 -9 2063 138 3 0 chr15 36182948 36183245 -49512509 + AluSx SINE Alu 1 298 -14 331 272 118 58 chr15 36183292 36184061 -49511693 + L1MEc LINE L1 1602 2376 -3839 2319 278 48 15 chr15 36184152 36185401 -49510353 + L1MEc LINE L1 2581 3870 -2345 1232 214 106 10 chr15 36185951 36186367 -49509387 + L1MEc LINE L1 3851 4306 -1909 374 271 154 68 chr15 36186472 36186752 -49509002 + L1MC4a LINE L1 6076 6379 -1429 695 211 70 85 chr15 36186909 36187327 -49508427 + L1MC5 LINE L1 6547 6917 -891 432 260 67 28 chr15 36187350 36187604 -49508150 + L1MC5 LINE L1 6957 7220 -741 268 310 57 0 chr15 36187741 36187899 -49507855 + L1MC5 LINE L1 7276 7442 -519 231 167 0 0 chr15 36187957 36187999 -49507755 + GA-rich Low_complexity Low_complexity 1 42 0 317 235 112 73 chr15 36188910 36189198 -49506556 + L1ME4a LINE L1 5731 6035 -86 1705 176 10 36 chr15 36189198 36189499 -49506255 - AluJo SINE Alu -19 293 1 317 235 112 73 chr15 36189499 36189550 -49506204 + L1ME4a LINE L1 6035 6083 -38 405 230 50 10 chr15 36190351 36190451 -49505303 - MER5A DNA MER1_type -71 118 15 200 277 0 0 chr15 36190462 36190509 -49505245 + L2 LINE L2 3263 3309 -4 198 71 0 0 chr15 36191033 36191061 -49504693 + (TAAAAA)n Simple_repeat Simple_repeat 4 31 0 25 0 0 0 chr15 36191990 36192015 -49503739 + AT_rich Low_complexity Low_complexity 1 25 0 371 286 37 19 chr15 36192195 36192356 -49503398 - MIR SINE MIR -11 251 88 2028 131 32 0 chr15 36192908 36193191 -49502563 - AluSg SINE Alu -18 292 1 274 306 14 21 chr15 36193191 36193326 -49502428 + L2 LINE L2 2769 2904 -410 361 235 71 58 chr15 36193378 36193557 -49502197 + MIR SINE MIR 30 209 -53 354 283 27 48 chr15 36193655 36193842 -49501912 - MIR SINE MIR -56 152 11 375 281 65 70 chr15 36194249 36194351 -49501403 + MIR SINE MIR 6 108 -154 2160 127 13 0 chr15 36194351 36194658 -49501096 - AluSp SINE Alu -1 312 2 375 281 65 70 chr15 36194658 36194740 -49501014 + MIR SINE MIR 108 189 -73 2100 141 3 0 chr15 36195325 36195622 -49500132 + AluSx SINE Alu 1 298 -14 513 204 34 7 chr15 36196061 36196363 -49499391 + CT-rich Low_complexity Low_complexity 1 310 0 239 309 114 36 chr15 36196364 36196584 -49499170 + L2 LINE L2 3077 3313 0 245 269 0 0 chr15 36196645 36196723 -49499031 + MER113 DNA MER1_type? 3 80 -441 428 286 103 90 chr15 36197373 36197568 -49498186 - L2 LINE L2 -1 3312 3109 1878 152 22 0 chr15 36197568 36197866 -49497888 + AluSx SINE Alu 1 304 0 428 286 103 90 chr15 36197866 36197970 -49497784 - L2 LINE L2 -204 3109 3008 2200 115 0 3 chr15 36198769 36199056 -49496698 + AluSg SINE Alu 1 286 -24 329 256 142 3 chr15 36200296 36200483 -49495271 - MIR SINE MIR -1 261 2 283 275 108 8 chr15 36200829 36200949 -49494805 + MIR3 SINE MIR 37 168 -40 399 21 0 0 chr15 36201205 36201253 -49494501 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 238 0 48 chr15 36201767 36201830 -49493924 + L2 LINE L2 3248 3307 -6 674 205 51 6 chr15 36201970 36202126 -49493628 - MER96B DNA MER1_type? -2 415 253 197 278 241 9 chr15 36202442 36202550 -49493204 + L2 LINE L2 3138 3270 -2 447 92 0 0 chr15 36204344 36204409 -49491345 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2005 125 0 4 chr15 36204414 36204694 -49491060 - AluSp SINE Alu -34 279 1 981 147 0 0 chr15 36205509 36205679 -49490075 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 1410 138 53 11 chr15 36206232 36206514 -49489240 - L1MA4A LINE L1 0 6303 6010 1877 130 0 4 chr15 36206514 36206783 -49488971 - AluSx SINE Alu -20 292 25 250 222 13 25 chr15 36207588 36207667 -49488087 - L1MC4 LINE L1 -370 7672 7508 205 307 53 26 chr15 36207707 36207821 -49487933 + MIR SINE MIR 18 134 -74 260 265 72 66 chr15 36208039 36208205 -49487549 - L1MC5 LINE L1 -492 7469 7303 2213 136 0 0 chr15 36208212 36208513 -49487241 - AluSx SINE Alu -11 301 1 1992 138 18 0 chr15 36208753 36208941 -49486813 - AluJo SINE Alu 0 315 118 183 42 0 0 chr15 36208941 36208965 -49486789 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1992 138 18 0 chr15 36208965 36209086 -49486668 - AluJo SINE Alu -197 118 1 249 235 56 0 chr15 36209089 36209192 -49486562 - L1MC5 LINE L1 -748 7213 7146 1917 205 18 20 chr15 36209192 36209641 -49486113 - MER39 LTR ERV1 0 707 260 290 189 44 67 chr15 36209628 36209718 -49486036 - LTR48B LTR ERV1 -556 88 1 * 251 286 63 37 chr15 36209718 36209907 -49485847 - L1MC5 LINE L1 -808 7153 6960 * 393 183 106 29 chr15 36209898 36210048 -49485706 - L1MC4 LINE L1 -912 7083 6916 285 262 27 27 chr15 36210777 36210926 -49484828 - L1MC5 LINE L1 -519 7442 7294 706 289 52 20 chr15 36210964 36211213 -49484541 - MIR SINE MIR 0 262 6 500 76 0 13 chr15 36211385 36211464 -49484290 + (TG)n Simple_repeat Simple_repeat 1 78 0 180 260 260 0 chr15 36211728 36211805 -49483949 + L2 LINE L2 3156 3252 -20 * 197 298 0 0 chr15 36211772 36211819 -49483935 + MIR SINE MIR 216 262 0 539 302 36 26 chr15 36212148 36212340 -49483414 + MIR SINE MIR 28 221 -41 1230 188 0 4 chr15 36212659 36212909 -49482845 + L1MB3 LINE L1 5932 6180 -3 554 199 59 89 chr15 36217127 36217363 -49478391 - L1ME3A LINE L1 -202 5968 5740 357 266 32 103 chr15 36217482 36217734 -49478020 + MLT1J2 LTR MaLR 160 393 -57 1246 290 82 20 chr15 36217766 36218607 -49477147 - L1ME3A LINE L1 -420 5742 4810 398 0 65 0 chr15 36218607 36218669 -49477085 + (TA)n Simple_repeat Simple_repeat 2 67 0 1246 290 82 20 chr15 36218669 36218934 -49476820 - L1ME3A LINE L1 -1352 4810 4563 920 291 52 22 chr15 36218990 36219686 -49476068 - L1ME3A LINE L1 -1819 4327 3504 908 93 16 0 chr15 36219689 36219818 -49475936 - AluSg/x SINE Alu -8 304 174 526 232 115 44 chr15 36219822 36219983 -49475771 - L1ME3A LINE L1 -2640 3506 3358 2130 122 17 0 chr15 36219983 36220278 -49475476 - AluSx SINE Alu -12 300 1 526 232 115 44 chr15 36220278 36220362 -49475392 - L1ME3A LINE L1 -2788 3358 3281 2433 93 3 0 chr15 36220362 36220674 -49475080 - AluSq SINE Alu 0 313 1 526 232 115 44 chr15 36220674 36220836 -49474918 - L1ME3A LINE L1 -2865 3281 3069 186 43 0 0 chr15 36221326 36221349 -49474405 + (TG)n Simple_repeat Simple_repeat 2 24 0 233 218 0 18 chr15 36221512 36221567 -49474187 + CT-rich Low_complexity Low_complexity 1 54 0 1093 220 40 99 chr15 36221567 36222121 -49473633 - L2 LINE L2 -1 3312 2674 856 141 23 0 chr15 36222121 36222249 -49473505 - AluSq/x SINE Alu -176 136 6 1808 158 0 3 chr15 36222251 36222564 -49473190 - AluJb SINE Alu 0 312 1 810 297 73 3 chr15 36222569 36222872 -49472882 - L2 LINE L2 -776 2538 2215 2563 58 0 0 chr15 36223041 36223349 -49472405 - AluY SINE Alu -2 309 2 22 0 0 0 chr15 36223351 36223373 -49472381 + AT_rich Low_complexity Low_complexity 1 22 0 2284 110 0 7 chr15 36223583 36223892 -49471862 - AluSc SINE Alu -2 307 1 267 292 0 0 chr15 36224276 36224366 -49471388 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 2023 123 83 14 chr15 36225434 36225785 -49469969 + THE1C LTR MaLR 1 375 0 376 272 106 28 chr15 36225983 36226163 -49469591 + MIR SINE MIR 33 226 -36 218 352 102 8 chr15 36226181 36226309 -49469445 - L2 LINE L2 -11 3261 3122 424 253 10 0 chr15 36226551 36226650 -49469104 + L2 LINE L2 3201 3300 -13 1501 157 108 11 chr15 36226803 36227071 -49468683 - AluJb SINE Alu -7 305 12 273 328 84 61 chr15 36227077 36227422 -49468332 - L2 LINE L2 -562 2752 2400 180 254 104 0 chr15 36227464 36227531 -49468223 + MIR SINE MIR 117 190 -72 300 225 188 0 chr15 36229543 36229623 -49466131 - MER81 DNA DNA -19 95 1 1648 179 11 0 chr15 36229652 36229955 -49465799 + AluJo SINE Alu 1 306 0 195 69 0 0 chr15 36230027 36230056 -49465698 + (T)n Simple_repeat Simple_repeat 1 29 0 987 254 25 8 chr15 36231194 36231430 -49464324 + MIR SINE MIR 23 262 0 1678 171 0 49 chr15 36231520 36231672 -49464082 - AluJb SINE Alu -27 285 152 2207 110 0 3 chr15 36231672 36231973 -49463781 - AluSp SINE Alu -13 300 1 1678 171 0 49 chr15 36231973 36232107 -49463647 - AluJb SINE Alu -160 152 13 703 277 13 55 chr15 36232133 36232368 -49463386 - MIR SINE MIR -10 252 28 2295 84 0 10 chr15 36232387 36232697 -49463057 - AluY SINE Alu -4 307 1 288 294 78 14 chr15 36233054 36233229 -49462525 + MIR SINE MIR 3 197 -61 * 440 248 26 0 chr15 36233228 36233341 -49462413 + MIR SINE MIR 34 149 -113 207 343 67 38 chr15 36233515 36233620 -49462134 + L2 LINE L2 3206 3313 0 185 309 0 0 chr15 36233796 36233851 -49461903 + MIR SINE MIR 69 123 -85 32 0 0 0 chr15 36233989 36234021 -49461733 + AT_rich Low_complexity Low_complexity 1 32 0 3609 200 120 115 chr15 36234080 36234370 -49461384 + MLT1D-int LTR MaLR 4 291 -1080 1636 181 54 4 chr15 36234370 36234647 -49461107 + AluJb SINE Alu 3 293 -19 3609 200 120 115 chr15 36234647 36235701 -49460053 + MLT1D-int LTR MaLR 291 1355 -16 1634 244 58 50 chr15 36235707 36236207 -49459547 + MLT1D LTR MaLR 1 504 -1 790 220 29 0 chr15 36236365 36236538 -49459216 + MER5B DNA MER1_type 1 178 0 263 276 71 67 chr15 36236556 36236810 -49458944 + L2 LINE L2 2242 2496 -818 275 0 0 28 chr15 36236962 36236998 -49458756 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1904 151 7 10 chr15 36237009 36237307 -49458447 + AluJb SINE Alu 1 297 -15 334 273 41 41 chr15 36237630 36237751 -49458003 - MIR SINE MIR -114 148 28 359 268 36 82 chr15 36237793 36237987 -49457767 - MER5A DNA MER1_type 0 189 5 33 0 0 0 chr15 36238742 36238775 -49456979 + AT_rich Low_complexity Low_complexity 1 33 0 481 248 25 0 chr15 36239224 36239345 -49456409 - L1ME4a LINE L1 -9 6112 5989 467 211 67 10 chr15 36239572 36239676 -49456078 - L2 LINE L2 -4 3309 3200 276 271 0 0 chr15 36239862 36239921 -49455833 + L2 LINE L2 3211 3269 -3 183 338 27 40 chr15 36240041 36240115 -49455639 + L3b LINE CR1 1498 1570 -13 219 257 59 30 chr15 36241052 36241153 -49454601 + MIR SINE MIR 13 116 -146 367 343 37 0 chr15 36241430 36241538 -49454216 + L2 LINE L2 3147 3258 -14 498 240 155 112 chr15 36241914 36242451 -49453303 + MER34 LTR ERV1 26 585 0 2536 11 0 0 chr15 36242962 36243235 -49452519 - AluYa5 SINE Alu -3 308 36 228 372 68 34 chr15 36244542 36244728 -49451026 + MIR3 SINE MIR 1 194 -62 180 0 0 0 chr15 36245149 36245169 -49450585 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 222 118 0 0 chr15 36245168 36245202 -49450552 + (TG)n Simple_repeat Simple_repeat 1 34 0 1809 184 0 29 chr15 36245752 36246068 -49449686 - AluJb SINE Alu -5 307 1 276 30 0 0 chr15 36246232 36246265 -49449489 + (TG)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr15 36246264 36246286 -49449468 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 448 254 88 46 chr15 36246640 36246842 -49448912 + MIR SINE MIR 31 253 -9 2217 98 3 7 chr15 36247762 36248059 -49447695 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr15 36249743 36249764 -49445990 + AT_rich Low_complexity Low_complexity 1 21 0 611 231 26 19 chr15 36251061 36251217 -49444537 + MIR SINE MIR 70 226 -36 1903 120 33 11 chr15 36251217 36251518 -49444236 + AluSq SINE Alu 1 307 0 282 271 0 0 chr15 36251530 36251589 -49444165 + MIR SINE MIR 204 262 0 181 277 21 0 chr15 36251748 36251795 -49443959 + L2 LINE L2 3006 3053 -219 460 244 77 89 chr15 36252130 36252256 -49443498 + MER5B DNA MER1_type 9 134 -44 2650 33 0 0 chr15 36252256 36252557 -49443197 - AluY SINE Alu -10 301 1 460 244 77 89 chr15 36252557 36252598 -49443156 + MER5B DNA MER1_type 134 174 -4 2402 78 0 3 chr15 36253460 36253768 -49441986 + AluY SINE Alu 1 307 -4 22 0 0 0 chr15 36257417 36257439 -49438315 + AT_rich Low_complexity Low_complexity 1 22 0 2100 154 44 26 chr15 36258491 36258874 -49436880 + MLT1B LTR MaLR 1 390 0 192 246 158 44 chr15 36259664 36259778 -49435976 + MIR3 SINE MIR 81 207 -1 324 289 13 0 chr15 36259850 36259926 -49435828 - L2 LINE L2 -8 3264 3188 493 280 30 0 chr15 36260127 36260259 -49435495 + MIR3 SINE MIR 70 205 -3 1772 178 0 28 chr15 36260428 36260748 -49435006 + AluJb SINE Alu 2 312 0 222 174 0 0 chr15 36260752 36260798 -49434956 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 2327 101 0 0 chr15 36261546 36261852 -49433902 - AluSx SINE Alu -6 306 1 247 241 121 12 chr15 36262089 36262172 -49433582 + MIR SINE MIR 100 191 -71 2395 86 0 3 chr15 36262226 36262527 -49433227 - AluY SINE Alu -11 300 1 867 167 8 0 chr15 36263400 36263532 -49432222 - FLAM_C SINE Alu 0 133 1 2142 206 49 24 chr15 36264397 36264863 -49430891 + MLT2B1 LTR ERVL 1 478 -42 377 154 0 13 chr15 36264863 36264941 -49430813 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 2394 84 0 7 chr15 36267055 36267363 -49428391 + AluY SINE Alu 1 306 -5 760 172 191 6 chr15 36267430 36267587 -49428167 + MER20 DNA MER1_type 6 191 -28 442 265 96 14 chr15 36269418 36269637 -49426117 + L1ME4a LINE L1 5694 5930 -191 2479 174 75 22 chr15 36269643 36270153 -49425601 + MLT1F LTR MaLR 1 537 -5 439 260 96 14 chr15 36270762 36270981 -49424773 + L1ME4a LINE L1 5694 5930 -191 2479 174 75 22 chr15 36270987 36271497 -49424257 + MLT1F LTR MaLR 1 537 -5 1878 221 62 61 chr15 36272148 36272895 -49422859 - LTR8A LTR ERV1 0 727 1 2830 153 25 5 chr15 36273739 36274177 -49421577 + MLT2B2 LTR ERVL 7 513 -41 601 82 18 18 chr15 36274177 36274287 -49421467 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 2830 153 25 5 chr15 36274287 36274324 -49421430 + MLT2B2 LTR ERVL 513 548 -6 341 183 12 37 chr15 36274614 36274696 -49421058 - MLT1H LTR MaLR 0 555 476 735 262 114 73 chr15 36274705 36275048 -49420706 - MLT1H LTR MaLR -192 357 1 2277 95 0 0 chr15 36275253 36275562 -49420192 - AluSx SINE Alu 0 309 1 731 299 15 0 chr15 36275614 36275811 -49419943 - MER63A DNA MER1_type -2 208 9 281 331 73 8 chr15 36275902 36276026 -49419728 + L2 LINE L2 3139 3270 -2 192 111 0 0 chr15 36277244 36277280 -49418474 + (T)n Simple_repeat Simple_repeat 1 36 0 293 242 32 11 chr15 36277774 36277786 -49417968 + HAL1 LINE L1 88 98 -2409 1493 156 0 0 chr15 36277786 36278017 -49417737 + AluSg/x SINE Alu 80 310 0 293 242 32 11 chr15 36278017 36278099 -49417655 + HAL1 LINE L1 98 184 -2323 660 250 59 51 chr15 36278497 36278600 -49417154 + L1MCc LINE L1 1179 1280 -5415 909 156 0 22 chr15 36278600 36278735 -49417019 - FLAM_C SINE Alu 0 133 2 660 250 59 51 chr15 36278735 36279096 -49416658 + L1MCc LINE L1 1280 1808 -4887 262 222 14 132 chr15 36279121 36279265 -49416489 + L1M4 LINE L1 4457 4583 -1563 352 218 128 15 chr15 36279482 36279615 -49416139 + LTR16C LTR ERVL 344 491 0 1143 289 128 24 chr15 36279616 36280069 -49415685 + HAL1 LINE L1 182 681 -1826 2430 66 0 10 chr15 36282122 36282425 -49413329 - AluY SINE Alu -11 300 1 846 207 65 121 chr15 36282733 36283120 -49412634 - MLT1A1 LTR MaLR 0 365 1 284 290 25 35 chr15 36283123 36283323 -49412431 + HAL1 LINE L1 1062 1259 -1248 2118 217 98 82 chr15 36283331 36284429 -49411325 + HAL1 LINE L1 1392 2507 0 10415 166 50 44 chr15 36284647 36287251 -49408503 - Charlie5 DNA MER1_type 0 2621 2 468 294 111 0 chr15 36287330 36287483 -49408271 - MIR SINE MIR -70 192 23 290 193 273 11 chr15 36287649 36287737 -49408017 - L2 LINE L2 -10 3303 3193 2014 124 62 0 chr15 36288098 36288389 -49407365 + AluSq SINE Alu 1 309 -4 221 0 35 0 chr15 36288692 36288721 -49407033 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 280 325 58 25 chr15 36288769 36288889 -49406865 - MIR3 SINE MIR -52 156 33 228 363 82 0 chr15 36288967 36289102 -49406652 + MIR SINE MIR 46 191 -71 469 269 83 46 chr15 36289461 36289677 -49406077 - MIR SINE MIR -32 230 7 * 542 280 0 8 chr15 36289621 36289746 -49406008 + MIR SINE MIR 25 148 -114 2496 69 0 0 chr15 36290421 36290727 -49405027 - AluY SINE Alu -5 306 1 207 245 0 0 chr15 36290764 36290813 -49404941 + L2 LINE L2 3248 3296 -17 21 0 0 0 chr15 36292154 36292175 -49403579 + AT_rich Low_complexity Low_complexity 1 21 0 371 266 0 44 chr15 36292991 36293104 -49402650 - L2 LINE L2 -184 3088 2981 1792 80 4 29 chr15 36293241 36293515 -49402239 + L1MA1 LINE L1 6036 6302 0 782 246 0 6 chr15 36294706 36294889 -49400865 + MIR SINE MIR 80 261 -1 333 0 0 0 chr15 36295032 36295069 -49400685 + (CA)n Simple_repeat Simple_repeat 2 38 0 396 0 0 0 chr15 36295939 36295983 -49399771 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 271 25 0 chr15 36296168 36296286 -49399468 + L1MC4a LINE L1 5766 5886 -1922 1098 117 22 22 chr15 36296488 36296668 -49399086 - Tigger3b DNA MER2_type 0 1232 1053 1691 108 119 0 chr15 36296676 36296954 -49398800 + MER1B DNA MER1_type 29 339 0 1514 95 23 53 chr15 36296954 36297027 -49398727 - Tigger3b DNA MER2_type -2068 960 886 1836 118 44 4 chr15 36297027 36297297 -49398457 + AluSc SINE Alu 1 281 -28 1514 95 23 53 chr15 36297297 36297484 -49398270 - Tigger3b DNA MER2_type -2142 886 708 419 141 8 164 chr15 36297486 36297614 -49398140 + FLAM_A SINE Alu 29 136 -6 3772 150 25 4 chr15 36297618 36298310 -49397444 - Tigger3b DNA MER2_type -524 707 2 24 0 0 0 chr15 36298343 36298367 -49397387 + AT_rich Low_complexity Low_complexity 1 24 0 1729 285 49 31 chr15 36299096 36299745 -49396009 + MLT2F LTR ERVL 1 661 -2 2599 118 62 5 chr15 36299885 36300290 -49395464 - MSTA LTR MaLR 0 428 1 2270 122 0 3 chr15 36300651 36300955 -49394799 - AluSx SINE Alu -9 303 1 1808 157 102 105 chr15 36301007 36301442 -49394312 + MLT2B1 LTR ERVL 1 436 -84 204 40 0 0 chr15 36301442 36301467 -49394287 + (TC)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr15 36301470 36301494 -49394260 + (CA)n Simple_repeat Simple_repeat 1 24 0 1808 157 102 105 chr15 36301494 36301576 -49394178 + MLT2B1 LTR ERVL 438 520 0 1150 193 3 77 chr15 36301991 36302302 -49393452 - MLT1B LTR MaLR -5 385 98 321 286 121 62 chr15 36304166 36304390 -49391364 - L1M2a LINE L1 -6369 799 563 310 313 26 31 chr15 36305902 36306097 -49389657 - L1ME LINE L1 -296 5825 5632 2129 108 3 0 chr15 36306723 36307009 -49388745 + AluSp SINE Alu 1 287 -26 216 0 0 0 chr15 36307012 36307036 -49388718 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 314 241 35 35 chr15 36307202 36307289 -49388465 - MIR3 SINE MIR -7 201 115 301 256 137 58 chr15 36307304 36307567 -49388187 - L2 LINE L2 -258 3055 2741 344 227 8 45 chr15 36307569 36307585 -49388169 - L1MA10 LINE L1 -1 6333 6318 3004 215 81 41 chr15 36307585 36308205 -49387549 - L1ME1 LINE L1 -5 6161 5567 2355 88 10 0 chr15 36308205 36308502 -49387252 - AluSq SINE Alu -13 300 1 3004 215 81 41 chr15 36308502 36309373 -49386381 - L1ME1 LINE L1 -599 5567 4606 356 209 0 15 chr15 36309373 36309440 -49386314 - L2 LINE L2 -571 2743 2678 663 205 0 0 chr15 36309749 36309866 -49385888 + FLAM_C SINE Alu 1 117 -16 253 259 69 61 chr15 36309952 36310083 -49385671 + MIR SINE MIR 74 205 -57 2393 80 0 19 chr15 36312752 36313065 -49382689 + AluY SINE Alu 1 307 -4 268 305 0 0 chr15 36315155 36315214 -49380540 + L2 LINE L2 3255 3313 0 1088 216 100 74 chr15 36315337 36315838 -49379916 - LTR33A LTR ERVL -8 515 2 27 29 0 0 chr15 36315874 36315908 -49379846 + AT_rich Low_complexity Low_complexity 1 34 0 700 153 24 0 chr15 36316489 36316613 -49379141 - MER20 DNA MER1_type 0 219 93 8214 49 9 1 chr15 36316936 36318750 -49377004 - L1PA5 LINE L1 -3 6151 4329 393 209 0 11 chr15 36318899 36318990 -49376764 - MER20 DNA MER1_type -128 91 2 205 203 43 43 chr15 36318994 36319063 -49376691 - MIR SINE MIR -94 168 100 41 0 0 0 chr15 36320716 36320757 -49374997 + AT_rich Low_complexity Low_complexity 1 41 0 1993 171 0 0 chr15 36321313 36321618 -49374136 + AluJb SINE Alu 3 307 -5 978 242 99 65 chr15 36321948 36322394 -49373360 - MLT1D LTR MaLR -33 472 12 494 265 92 114 chr15 36322413 36322825 -49372929 - HAL1 LINE L1 -905 1602 1200 44 0 0 0 chr15 36322874 36322918 -49372836 + AT_rich Low_complexity Low_complexity 1 44 0 1826 199 25 87 chr15 36322953 36323668 -49372086 - L1MA4 LINE L1 -115 6185 5515 835 86 86 0 chr15 36324207 36324335 -49371419 - MER85 DNA T2_type 0 139 1 333 293 33 88 chr15 36324490 36324671 -49371083 - L1MEd LINE L1 -4524 1605 1435 350 286 89 33 chr15 36324686 36325087 -49370667 - L1MEd LINE L1 -4768 1542 1081 1910 103 6 29 chr15 36325088 36325399 -49370355 - AluY SINE Alu -7 304 1 183 204 0 0 chr15 36326869 36326918 -49368836 + GA-rich Low_complexity Low_complexity 1 49 0 1783 142 39 3 chr15 36327080 36327391 -49368363 - MER44D DNA MER2_type -8 601 10 271 253 25 13 chr15 36327662 36327741 -49368013 + CT-rich Low_complexity Low_complexity 3 82 0 1099 118 55 35 chr15 36328081 36328335 -49367419 + Charlie1 DNA MER1_type 2434 2692 -69 362 306 30 22 chr15 36328343 36328477 -49367277 - MIR SINE MIR -101 161 27 2251 107 3 25 chr15 36328492 36328811 -49366943 - AluSq SINE Alu -1 312 1 1054 189 50 43 chr15 36328982 36329304 -49366450 - MER33 DNA MER1_type 0 324 1 691 261 68 11 chr15 36329307 36329483 -49366271 + MIR SINE MIR 34 219 -43 185 62 0 31 chr15 36329582 36329614 -49366140 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 1478 203 12 20 chr15 36329841 36330110 -49365644 - L1ME1 LINE L1 -112 6123 5856 2183 133 98 20 chr15 36330110 36330507 -49365247 + MSTA LTR MaLR 1 428 0 1478 203 12 20 chr15 36330507 36330582 -49365172 - L1ME1 LINE L1 -379 5856 5782 189 0 0 0 chr15 36330582 36330603 -49365151 + (TC)n Simple_repeat Simple_repeat 2 22 0 1820 172 0 7 chr15 36330610 36330907 -49364847 - AluJb SINE Alu -3 309 15 1652 218 147 17 chr15 36330915 36331123 -49364631 - L1ME1 LINE L1 -949 5266 5086 414 0 0 0 chr15 36331123 36331169 -49364585 + (TG)n Simple_repeat Simple_repeat 1 46 0 1652 218 147 17 chr15 36331169 36331599 -49364155 - L1ME1 LINE L1 -1129 5086 4545 490 165 0 17 chr15 36331599 36331714 -49364040 + CT-rich Low_complexity Low_complexity 4 116 0 1401 168 7 92 chr15 36331714 36332018 -49363736 - AluJb SINE Alu -34 278 1 4882 261 112 39 chr15 36332101 36333725 -49362029 - L1ME1 LINE L1 -1674 4541 3037 1875 169 0 0 chr15 36333725 36334026 -49361728 - AluSx SINE Alu -11 301 1 4882 261 112 39 chr15 36334026 36336528 -49359226 - L1ME1 LINE L1 -3178 3037 148 2090 117 7 0 chr15 36337458 36337749 -49358005 + AluY SINE Alu 1 293 -18 329 314 24 65 chr15 36337877 36338046 -49357708 - MIR SINE MIR -66 196 35 360 326 57 14 chr15 36338068 36338209 -49357545 - MER5A DNA MER1_type -3 186 40 1012 249 46 0 chr15 36338316 36338533 -49357221 + MIR SINE MIR 12 238 -24 340 271 147 16 chr15 36340038 36340167 -49355587 - MIR SINE MIR -113 149 4 1992 127 0 7 chr15 36340503 36340779 -49354975 - AluSx SINE Alu -37 275 2 2279 83 3 13 chr15 36341187 36341488 -49354266 - AluSx SINE Alu -14 298 1 237 65 0 0 chr15 36341886 36341917 -49353837 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1525 231 124 78 chr15 36341917 36342545 -49353209 + MER21B LTR ERV1 22 794 -137 4517 125 3 22 chr15 36342559 36343206 -49352548 + MER41B LTR ERV1 1 635 0 386 289 103 43 chr15 36343341 36343691 -49352063 - MLT1K LTR MaLR -24 564 194 1619 203 48 15 chr15 36344312 36344573 -49351181 - MER58B DNA MER1_type -2079 341 65 2138 125 0 3 chr15 36344573 36344869 -49350885 + AluSg SINE Alu 1 295 -15 1619 203 48 15 chr15 36344869 36344937 -49350817 - MER58B DNA MER1_type -2355 65 1 195 295 82 33 chr15 36345248 36345370 -49350384 + L2 LINE L2 2333 2460 -854 385 300 171 0 chr15 36345423 36345563 -49350191 + MLT1K LTR MaLR 116 279 -309 337 156 0 47 chr15 36345544 36345608 -49350146 + MLT1K LTR MaLR 524 584 -4 * 185 294 272 22 chr15 36345858 36346042 -49349712 + MIR SINE MIR 20 249 -13 3687 139 39 19 chr15 36346286 36346877 -49348877 + LTR26 LTR ERV1 1 603 0 239 333 36 80 chr15 36347114 36347252 -49348502 + L2 LINE L2 3133 3264 -8 226 265 0 0 chr15 36347301 36347350 -49348404 - LTR33A LTR ERVL -2 521 473 901 176 18 18 chr15 36347372 36347537 -49348217 - AluJo SINE Alu -25 287 123 2287 100 3 0 chr15 36347540 36347839 -49347915 + AluSq SINE Alu 1 300 -13 2417 79 0 0 chr15 36348545 36348835 -49346919 + AluSg SINE Alu 1 290 -20 619 237 0 20 chr15 36349279 36349431 -49346323 + MIR SINE MIR 72 220 -42 2181 102 3 0 chr15 36349701 36349986 -49345768 - AluSg SINE Alu -24 286 1 274 270 0 14 chr15 36350636 36350710 -49345044 + MIR3 SINE MIR 136 208 0 286 291 93 17 chr15 36350884 36351056 -49344698 + L1ME LINE L1 5683 5867 -254 24 0 0 0 chr15 36352936 36352960 -49342794 + AT_rich Low_complexity Low_complexity 1 24 0 195 129 0 0 chr15 36354701 36354732 -49341022 + (T)n Simple_repeat Simple_repeat 1 31 0 180 253 60 60 chr15 36357305 36357388 -49338366 - L3 LINE CR1 -896 681 599 183 80 0 0 chr15 36357426 36357451 -49338303 + (GGA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 36358060 36358081 -49337673 + AT_rich Low_complexity Low_complexity 1 21 0 243 229 0 0 chr15 36358582 36358643 -49337111 + (CAT)n Simple_repeat Simple_repeat 2 62 0 219 36 0 0 chr15 36358971 36358999 -49336755 + (CA)n Simple_repeat Simple_repeat 1 28 0 242 295 0 54 chr15 36361095 36361224 -49334530 + CT-rich Low_complexity Low_complexity 3 124 0 201 108 0 0 chr15 36362103 36362140 -49333614 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 330 153 0 0 chr15 36364120 36364179 -49331575 + CT-rich Low_complexity Low_complexity 2 60 0 240 324 19 19 chr15 36364623 36364731 -49331023 + CT-rich Low_complexity Low_complexity 2 109 0 1408 91 0 43 chr15 36367183 36367415 -49328339 - AluY SINE Alu -89 222 1 326 239 26 35 chr15 36367422 36367535 -49328219 - L1MEd LINE L1 -5043 1076 965 284 200 93 0 chr15 36367564 36367639 -49328115 - L1MB7 LINE L1 0 6184 6103 1509 185 62 0 chr15 36368377 36368669 -49327085 - AluJb SINE Alu -2 310 1 2006 125 0 0 chr15 36368691 36368978 -49326776 - AluSc SINE Alu -9 300 14 720 202 0 8 chr15 36369421 36369540 -49326214 - FLAM_A SINE Alu -12 121 4 2322 106 0 13 chr15 36371112 36371424 -49324330 - AluY SINE Alu -3 308 1 469 168 0 74 chr15 36371667 36371762 -49323992 - THE1B LTR MaLR -83 281 194 468 299 10 44 chr15 36371765 36371969 -49323785 - L1ME1 LINE L1 -55 6111 5915 2536 201 16 55 chr15 36371991 36372504 -49323250 - L1ME1 LINE L1 -238 5928 5443 1770 190 3 0 chr15 36372504 36372814 -49322940 - AluJo SINE Alu -1 311 1 2536 201 16 55 chr15 36372814 36372942 -49322812 - L1ME1 LINE L1 -723 5443 5312 259 55 96 27 chr15 36372982 36373055 -49322699 + (TTAAA)n Simple_repeat Simple_repeat 5 82 0 1335 201 46 28 chr15 36373061 36373344 -49322410 - AluJb SINE Alu -24 288 1 3452 175 29 3 chr15 36373344 36373960 -49321794 - L1MB1 LINE L1 -41 6127 5496 1957 161 0 0 chr15 36373991 36374282 -49321472 - AluSx SINE Alu -19 293 3 1222 213 0 4 chr15 36374298 36374561 -49321193 - L1ME2 LINE L1 -246 5918 5657 567 133 7 126 chr15 36374551 36374694 -49321060 - L1MB1 LINE L1 -736 5432 5307 * 1185 192 8 23 chr15 36374694 36374954 -49320800 - L1 LINE L1 -764 5382 5127 2197 126 0 0 chr15 36375006 36375299 -49320455 - AluSx SINE Alu -16 296 4 4036 267 96 14 chr15 36375303 36377392 -49318362 - L1M1 LINE L1 -4045 1925 6 417 195 42 17 chr15 36377389 36377507 -49318247 - L1ME2 LINE L1 -805 5341 5221 * 659 290 21 43 chr15 36377492 36377771 -49317983 - L1 LINE L1 -1163 4983 4711 1886 125 28 41 chr15 36377808 36378127 -49317627 - MER44D DNA MER2_type -24 585 1 1595 230 46 9 chr15 36378141 36378580 -49317174 - L1 LINE L1 -1436 4710 4256 774 249 42 5 chr15 36378595 36378784 -49316970 - MLT1F LTR MaLR -2 540 345 398 233 62 16 chr15 36378789 36378918 -49316836 - L1 LINE L1 -2017 4129 3995 180 125 0 0 chr15 36379093 36379125 -49316629 + (TTA)n Simple_repeat Simple_repeat 2 33 0 303 347 47 6 chr15 36379392 36379619 -49316135 - L1MC/D LINE L1 -588 5586 5364 37 23 0 0 chr15 36380006 36380050 -49315704 + AT_rich Low_complexity Low_complexity 1 44 0 569 241 31 75 chr15 36380270 36380498 -49315256 - MER46C DNA MER2_type -119 219 2 1065 229 18 9 chr15 36380608 36380826 -49314928 - MER69 DNA AcHobo -2304 222 3 566 296 124 16 chr15 36381036 36381486 -49314268 - L1ME LINE L1 -305 5816 5318 1912 242 10 37 chr15 36381705 36382197 -49313557 + MLT2B1 LTR ERVL 1 479 -41 214 296 14 0 chr15 36382199 36382270 -49313484 + MIR SINE MIR 191 262 0 21 0 0 0 chr15 36382334 36382355 -49313399 + AT_rich Low_complexity Low_complexity 1 21 0 1791 184 48 17 chr15 36383465 36383819 -49311935 + MLT1A1 LTR MaLR 1 365 0 2017 120 67 0 chr15 36384004 36384287 -49311467 - AluSq SINE Alu -11 302 1 198 0 0 0 chr15 36384376 36384398 -49311356 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 256 325 43 37 chr15 36384516 36384679 -49311075 - MIR3 SINE MIR -9 199 36 2082 155 50 24 chr15 36384934 36385314 -49310440 - MSTB1 LTR MaLR 0 432 43 277 93 37 19 chr15 36385314 36385368 -49310386 + CT-rich Low_complexity Low_complexity 2 56 0 1422 186 19 38 chr15 36385369 36385687 -49310067 - AluJo SINE Alu 0 312 1 272 204 0 0 chr15 36385688 36385737 -49310017 - MSTB1 LTR MaLR -379 53 5 609 319 39 17 chr15 36385788 36386280 -49309474 - L1M4 LINE L1 -2221 3925 3426 305 120 40 180 chr15 36386292 36386392 -49309362 - L1MB7 LINE L1 0 6184 6099 3123 200 36 64 chr15 36387073 36389001 -49306753 - L1ME1 LINE L1 -5 6161 4252 828 180 12 24 chr15 36389533 36389700 -49306054 - MER103 DNA DNA 0 166 2 336 315 18 27 chr15 36391818 36391929 -49303825 + MIR SINE MIR 29 138 -124 1797 168 3 3 chr15 36392015 36392319 -49303435 - AluJo SINE Alu -8 304 1 192 179 0 0 chr15 36392483 36392522 -49303232 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 563 281 69 14 chr15 36392704 36392921 -49302833 - L1MC4a LINE L1 -1885 5923 5695 317 300 11 11 chr15 36393149 36393239 -49302515 - L2 LINE L2 -24 3289 3200 492 263 211 5 chr15 36393729 36393919 -49301835 + LTR16C LTR ERVL 263 491 0 197 318 111 0 chr15 36394060 36394123 -49301631 - L2 LINE L2 -52 3220 3151 1202 274 52 35 chr15 36394303 36394767 -49300987 - MLT1K LTR MaLR 0 588 117 21 36 0 0 chr15 36396094 36396122 -49299632 + AT_rich Low_complexity Low_complexity 1 28 0 2206 117 0 3 chr15 36396223 36396523 -49299231 - AluSx SINE Alu -13 299 1 240 245 20 10 chr15 36398113 36398211 -49297543 + (TA)n Simple_repeat Simple_repeat 2 100 0 380 299 68 26 chr15 36398217 36398444 -49297310 - L1ME4a LINE L1 -287 5834 5595 1805 163 0 10 chr15 36398444 36398751 -49297003 - AluJb SINE Alu -8 304 1 180 97 0 0 chr15 36399131 36399162 -49296592 + (TG)n Simple_repeat Simple_repeat 1 31 0 1574 181 20 7 chr15 36401952 36402244 -49293510 - AluSx SINE Alu -15 297 2 1205 216 113 0 chr15 36402295 36402587 -49293167 + MER58B DNA MER1_type 2 326 -15 261 274 0 0 chr15 36404123 36404185 -49291569 - MER5A DNA MER1_type 0 189 128 239 299 0 0 chr15 36404248 36404315 -49291439 + (TG)n Simple_repeat Simple_repeat 1 67 0 420 151 0 0 chr15 36404315 36404390 -49291364 - MER5A DNA MER1_type -111 78 4 2194 121 0 6 chr15 36406658 36407002 -49288752 + AluSq SINE Alu 1 342 0 1716 93 0 0 chr15 36408281 36408497 -49287257 - AluY SINE Alu -13 298 83 379 296 95 22 chr15 36408745 36408924 -49286830 + MIR3 SINE MIR 12 203 -5 2864 71 24 5 chr15 36409042 36409420 -49286334 - L1PA8 LINE L1 0 6172 5788 1331 104 16 0 chr15 36409420 36409613 -49286141 + L1P LINE L1 4635 4830 -1316 405 229 57 9 chr15 36409660 36409765 -49285989 - MIR SINE MIR -57 151 42 1238 118 20 5 chr15 36409910 36410105 -49285649 - L1MD3 LINE L1 -8 7987 7790 211 155 0 35 chr15 36412425 36412483 -49283271 + (TAG)n Simple_repeat Simple_repeat 1 56 0 363 270 102 46 chr15 36412498 36412694 -49283060 - MIR SINE MIR -5 257 51 281 287 140 24 chr15 36413353 36413517 -49282237 + MIR SINE MIR 30 212 -50 246 227 0 0 chr15 36413621 36413665 -49282089 - MER103 DNA DNA -49 117 74 1809 156 0 0 chr15 36413677 36413947 -49281807 + AluJo SINE Alu 13 282 -30 234 0 0 0 chr15 36413950 36413976 -49281778 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1232 186 0 18 chr15 36414053 36414274 -49281480 - AluSg/x SINE Alu -9 303 87 623 300 115 8 chr15 36414468 36414728 -49281026 - MLT1K LTR MaLR -274 314 27 357 328 68 34 chr15 36414799 36414976 -49280778 - MER5A DNA MER1_type 0 189 7 2359 55 17 0 chr15 36415041 36415330 -49280424 - AluY SINE Alu -16 295 2 467 290 124 0 chr15 36415462 36415624 -49280130 - MER5A DNA MER1_type 0 189 4 182 36 0 36 chr15 36415782 36415810 -49279944 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 858 127 0 0 chr15 36415813 36415931 -49279823 - AluSq/x SINE Alu -195 118 1 1177 155 77 10 chr15 36416221 36416428 -49279326 + MSTB LTR MaLR 1 221 -205 525 143 0 0 chr15 36416448 36416518 -49279236 - AluS SINE Alu -242 71 2 454 252 82 14 chr15 36416519 36416666 -49279088 - L2 LINE L2 -599 2715 2559 407 299 24 37 chr15 36416725 36416889 -49278865 + MIR SINE MIR 61 222 -40 288 270 112 26 chr15 36417027 36417179 -49278575 - MIR3 SINE MIR -9 199 35 903 130 0 43 chr15 36417267 36417405 -49278349 + FLAM_C SINE Alu 2 133 0 315 349 75 27 chr15 36417496 36417642 -49278112 - MIR SINE MIR -73 189 37 423 202 84 25 chr15 36418952 36419071 -49276683 + MIR SINE MIR 78 203 -59 2051 145 7 0 chr15 36419093 36419397 -49276357 - AluSx SINE Alu -6 306 1 535 281 67 29 chr15 36419497 36419707 -49276047 - MIR SINE MIR -27 235 18 318 357 80 45 chr15 36420077 36420363 -49275391 + L1MC4a LINE L1 5561 5856 -1952 1538 146 77 56 chr15 36420533 36420820 -49274934 + AluSx SINE Alu 5 297 -15 218 193 18 0 chr15 36420820 36420877 -49274877 + GA-rich Low_complexity Low_complexity 2 59 0 665 288 182 34 chr15 36420893 36421338 -49274416 + L3 LINE CR1 913 1423 -154 297 262 82 16 chr15 36421392 36421514 -49274240 + MIR SINE MIR 77 206 -56 216 304 0 14 chr15 36473261 36473330 -49222424 + (TG)n Simple_repeat Simple_repeat 1 68 0 359 358 86 30 chr15 36474310 36474542 -49221212 + MIR SINE MIR 12 256 -6 291 288 9 90 chr15 36476241 36476352 -49219402 - L2 LINE L2 -5 3267 3166 506 261 56 35 chr15 36476362 36476504 -49219250 - MIR3 SINE MIR -30 178 34 2199 103 7 10 chr15 36476582 36476882 -49218872 - AluSx SINE Alu -13 299 1 221 333 78 35 chr15 36478015 36478156 -49217598 + MIR SINE MIR 98 244 -18 25561 66 3 4 chr15 36478538 36481822 -49213932 - L1P LINE L1 -2861 3285 3 1186 181 84 58 chr15 36482279 36482518 -49213236 - MER33 DNA MER1_type -2267 318 67 1917 118 48 0 chr15 36482518 36482818 -49212936 - AluSx SINE Alu 0 313 1 1186 181 84 58 chr15 36482818 36482887 -49212867 - MER33 DNA MER1_type -2518 67 1 341 285 182 27 chr15 36482953 36483322 -49212432 - L1M4 LINE L1 -1542 4604 4179 673 198 6 38 chr15 36483330 36483487 -49212267 - MLT1F1 LTR MaLR -108 459 308 658 201 0 62 chr15 36483553 36483697 -49212057 - MLT1F1 LTR MaLR -282 285 151 434 207 56 29 chr15 36483682 36483789 -49211965 + MLT1F1 LTR MaLR 21 129 -445 * 308 284 50 30 chr15 36483941 36484142 -49211612 - L1M4 LINE L1 -3789 2357 2153 929 168 0 60 chr15 36484442 36484609 -49211145 - AluJo SINE Alu -30 282 126 810 290 116 52 chr15 36484781 36485020 -49210734 - HAL1b LINE L1 -520 828 606 2194 120 3 0 chr15 36485020 36485312 -49210442 - AluSg SINE Alu -16 294 2 810 290 116 52 chr15 36485312 36485449 -49210305 - HAL1b LINE L1 -742 606 479 2317 73 3 0 chr15 36485449 36485735 -49210019 - AluY SINE Alu -4 307 21 810 290 116 52 chr15 36485735 36486092 -49209662 - HAL1b LINE L1 -869 479 47 391 100 33 0 chr15 36486263 36486323 -49209431 - AluJ/FLAM SINE Alu -240 62 1 1487 165 92 26 chr15 36486509 36486782 -49208972 - AluJb SINE Alu -21 291 1 21 36 0 0 chr15 36487676 36487704 -49208050 + AT_rich Low_complexity Low_complexity 1 28 0 344 294 71 41 chr15 36487956 36488153 -49207601 - MIR SINE MIR 0 262 60 204 125 0 0 chr15 36488754 36488786 -49206968 + (TG)n Simple_repeat Simple_repeat 2 33 0 1999 115 22 26 chr15 36488860 36489172 -49206582 + AluSx SINE Alu 1 311 -1 223 91 23 23 chr15 36489438 36489482 -49206272 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 441 103 0 0 chr15 36489946 36490014 -49205740 + (TC)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr15 36490014 36490037 -49205717 + (CA)n Simple_repeat Simple_repeat 1 23 0 290 324 21 14 chr15 36490547 36490692 -49205062 - L2 LINE L2 -202 3070 2925 189 314 164 29 chr15 36490685 36490892 -49204862 - L2 LINE L2 -527 2787 2553 * 526 270 71 71 chr15 36491442 36491541 -49204213 + MER102b DNA MER1_type 1 99 -1329 2387 100 0 0 chr15 36491541 36491841 -49203913 - AluSx SINE Alu -10 302 3 526 270 71 71 chr15 36491841 36492078 -49203676 + MER102b DNA MER1_type 98 337 -4 184 297 47 16 chr15 36492371 36492435 -49203319 + MIR SINE MIR 87 152 -56 1979 148 16 19 chr15 36494057 36494368 -49201386 + AluJo SINE Alu 1 310 -2 285 264 84 39 chr15 36494379 36494557 -49201197 - L1ME LINE L1 -432 5689 5504 283 302 35 0 chr15 36494752 36494838 -49200916 + MIR SINE MIR 2 90 -172 617 209 75 65 chr15 36494844 36495046 -49200708 - MER20 DNA MER1_type 0 219 16 292 283 33 0 chr15 36495046 36495138 -49200616 + MIR SINE MIR 110 204 -58 234 243 114 0 chr15 36495370 36495440 -49200314 + L2 LINE L2 3232 3309 -4 1936 120 0 0 chr15 36495504 36495762 -49199992 - AluSx SINE Alu -46 266 9 21 0 0 0 chr15 36495856 36495877 -49199877 + AT_rich Low_complexity Low_complexity 1 21 0 190 293 95 35 chr15 36497517 36497633 -49198121 - L2 LINE L2 -8 3264 3142 2123 128 0 10 chr15 36497696 36498000 -49197754 + AluSx SINE Alu 12 312 0 702 129 0 0 chr15 36498171 36498272 -49197482 - AluJ/FLAM SINE Alu -210 102 2 188 372 62 9 chr15 36498435 36498548 -49197206 + L2 LINE L2 3154 3272 0 242 287 26 52 chr15 36499765 36499880 -49195874 + L2 LINE L2 3202 3313 0 204 359 9 38 chr15 36501065 36501171 -49194583 - MIR SINE MIR -72 190 88 753 181 23 0 chr15 36501288 36501421 -49194333 + FLAM_C SINE Alu 2 137 -6 1830 174 0 77 chr15 36502489 36502814 -49192940 - MLT1A1 LTR MaLR -2 363 71 2726 97 6 0 chr15 36502814 36503176 -49192578 - THE1B LTR MaLR 0 364 1 1830 174 0 77 chr15 36503176 36503242 -49192512 - MLT1A1 LTR MaLR -294 71 2 239 360 48 8 chr15 36504087 36504212 -49191542 + MLT1K LTR MaLR 14 143 -445 7285 49 5 5 chr15 36504216 36505211 -49190543 - L1PA8 LINE L1 0 6172 5214 700 278 74 0 chr15 36505220 36505396 -49190358 + MLT1A1 LTR MaLR 174 362 -3 1752 165 33 0 chr15 36507067 36507339 -49188415 + AluSx SINE Alu 1 281 -31 254 102 109 219 chr15 36507494 36507622 -49188132 - MER69 DNA AcHobo 0 2526 2413 2084 110 27 27 chr15 36507639 36507975 -49187779 - Tigger2 DNA MER2_type -32 2686 2351 786 144 8 8 chr15 36507982 36508107 -49187647 - Tigger2 DNA MER2_type -2593 125 1 547 259 142 29 chr15 36508107 36508423 -49187331 - MER69 DNA AcHobo -108 2418 2067 2097 114 7 0 chr15 36508423 36508736 -49187018 - AluSx SINE Alu 0 315 1 1610 232 67 34 chr15 36508746 36509182 -49186572 - MER69 DNA AcHobo -2076 450 1 183 42 0 0 chr15 36509536 36509560 -49186194 + (T)n Simple_repeat Simple_repeat 1 24 0 2257 54 3 44 chr15 36509693 36510023 -49185731 - AluY SINE Alu 0 318 1 673 281 97 72 chr15 36510072 36510503 -49185251 - MLT1K LTR MaLR -6 582 141 428 251 251 12 chr15 36510806 36511157 -49184597 - LTR16A1 LTR ERVL 0 450 4 2241 101 0 14 chr15 36511209 36511506 -49184248 - AluSg SINE Alu -17 293 1 570 274 103 55 chr15 36512342 36512634 -49183120 + MER102b DNA MER1_type 14 319 -22 292 299 16 8 chr15 36513713 36513840 -49181914 - AluSp SINE Alu -174 129 2 312 330 9 17 chr15 36514077 36514192 -49181562 - MIR SINE MIR -126 136 23 24 32 0 0 chr15 36514819 36514850 -49180904 + AT_rich Low_complexity Low_complexity 1 31 0 520 231 37 0 chr15 36514999 36515133 -49180621 - L1ME4a LINE L1 -205 5916 5778 220 388 9 0 chr15 36515500 36515616 -49180138 - MIR SINE MIR -62 146 30 251 175 18 0 chr15 36515688 36515745 -49180009 + GA-rich Low_complexity Low_complexity 3 60 0 797 108 16 49 chr15 36515745 36515930 -49179824 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 240 59 0 0 chr15 36516755 36516789 -49178965 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 0 37 0 chr15 36517062 36517089 -49178665 + (TC)n Simple_repeat Simple_repeat 2 29 0 7667 186 53 63 chr15 36517516 36519288 -49176466 + MER52A LTR ERV1 1 1755 0 285 342 18 0 chr15 36519330 36519441 -49176313 + L2 LINE L2 2947 3059 -213 301 302 101 18 chr15 36519531 36519700 -49176054 - L1M4 LINE L1 -1226 4920 4738 1906 144 3 39 chr15 36519701 36520007 -49175747 - AluJb SINE Alu -17 295 1 2514 103 43 6 chr15 36520058 36520409 -49175345 - THE1B LTR MaLR 0 364 1 1584 98 5 0 chr15 36520409 36520624 -49175130 - THE1B-int LTR MaLR 0 1580 1365 1617 218 28 25 chr15 36520664 36520895 -49174859 - Zaphod DNA AcHobo -1 4030 3796 2185 116 0 7 chr15 36520895 36521212 -49174542 - AluSx SINE Alu 0 312 1 1617 218 28 25 chr15 36521212 36521415 -49174339 - Zaphod DNA AcHobo -235 3796 3595 * 1842 264 78 50 chr15 36521383 36522186 -49173568 - Zaphod DNA AcHobo -3150 881 56 183 295 143 9 chr15 36522525 36522630 -49173124 + L2 LINE L2 3178 3296 -17 1011 189 21 11 chr15 36522757 36522948 -49172806 + MLT1A1 LTR MaLR 173 365 0 3121 220 109 12 chr15 36523010 36523911 -49171843 + L1PBa LINE L1 6 993 -5870 6601 197 19 70 chr15 36523913 36525625 -49170129 - L1 LINE L1 -820 5326 3701 * 25714 101 9 10 chr15 36525614 36529302 -49166452 + L1P LINE L1 11 3694 -2452 3503 122 32 2 chr15 36529295 36529828 -49165926 + L1PB1 LINE L1 5337 5885 -266 * 304 197 26 40 chr15 36531783 36531859 -49163895 - MIR SINE MIR -108 154 80 1242 155 35 158 chr15 36534353 36534727 -49161027 - MLT1A1 LTR MaLR -37 328 1 370 272 5 122 chr15 36534906 36535119 -49160635 - MIR SINE MIR 0 262 75 324 259 12 0 chr15 36536205 36536290 -49159464 + MIR SINE MIR 177 262 0 346 333 0 25 chr15 36536298 36536418 -49159336 - MIR SINE MIR -55 153 37 199 350 100 12 chr15 36536430 36536510 -49159244 - L2 LINE L2 0 3272 3186 30 27 0 0 chr15 36536692 36536729 -49159025 + AT_rich Low_complexity Low_complexity 1 37 0 226 204 19 37 chr15 36536953 36536990 -49158764 + CT-rich Low_complexity Low_complexity 2 39 -15 1731 174 55 0 chr15 36536990 36537283 -49158471 - AluJb SINE Alu -1 311 3 226 204 19 37 chr15 36537283 36537299 -49158455 + CT-rich Low_complexity Low_complexity 39 54 0 334 335 132 17 chr15 36538739 36539035 -49156719 - L2 LINE L2 -9 3263 2934 2104 109 10 3 chr15 36539602 36539895 -49155859 - AluSx SINE Alu -15 297 3 640 200 26 74 chr15 36540131 36540321 -49155433 + LTR41 LTR ERVL 1 181 -592 428 163 25 70 chr15 36540618 36540762 -49154992 + LTR50 LTR ERVL 639 795 0 363 78 0 0 chr15 36540833 36540884 -49154870 + (TC)n Simple_repeat Simple_repeat 2 52 0 408 20 0 0 chr15 36540884 36540933 -49154821 + (CA)n Simple_repeat Simple_repeat 1 49 0 299 311 34 20 chr15 36540977 36541125 -49154629 - LTR16C LTR ERVL 0 491 342 24 0 0 0 chr15 36541314 36541338 -49154416 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 36544997 36545018 -49150736 + AT_rich Low_complexity Low_complexity 1 21 0 249 173 0 39 chr15 36546754 36546806 -49148948 - L2 LINE L2 -81 3232 3183 2510 71 0 0 chr15 36546907 36547216 -49148538 - AluY SINE Alu -2 309 1 1389 232 18 6 chr15 36547791 36548119 -49147635 + MER46C DNA MER2_type 6 337 -1 790 234 88 0 chr15 36548364 36548569 -49147185 - L1MB7 LINE L1 -9 6175 5953 214 318 16 16 chr15 36548653 36548716 -49147038 - MIR SINE MIR -180 82 20 239 262 54 77 chr15 36548721 36548889 -49146865 + L3 LINE CR1 1413 1576 -1 2093 107 10 10 chr15 36549895 36550186 -49145568 - AluSx SINE Alu -21 291 1 332 259 0 56 chr15 36550209 36550317 -49145437 - MIR SINE MIR -113 149 48 352 247 24 24 chr15 36550366 36550451 -49145303 - MIR SINE MIR -163 99 15 3248 129 44 30 chr15 36550585 36551127 -49144627 - MER21A LTR ERV1 -6 925 376 1308 136 99 16 chr15 36551133 36551376 -49144378 - MER21A LTR ERV1 -668 263 1 28 0 0 0 chr15 36551796 36551824 -49143930 + AT_rich Low_complexity Low_complexity 1 28 0 2051 122 0 3 chr15 36551824 36552118 -49143636 - AluSx SINE Alu -19 293 1 488 266 79 78 chr15 36552439 36552606 -49143148 + L1MC4a LINE L1 5429 5594 -527 2010 133 7 17 chr15 36552606 36552907 -49142847 + AluJb SINE Alu 1 298 -14 488 266 79 78 chr15 36552907 36553309 -49142445 + L1MC4a LINE L1 5594 6016 -105 395 241 56 9 chr15 36553496 36553604 -49142150 + MIR SINE MIR 94 206 -56 2201 118 0 0 chr15 36553898 36554195 -49141559 + AluSx SINE Alu 2 298 -14 244 269 13 13 chr15 36555207 36555285 -49140469 - MIR SINE MIR -13 249 172 2094 123 10 0 chr15 36555696 36555997 -49139757 - AluSx SINE Alu -4 308 5 216 0 0 0 chr15 36556745 36556769 -49138985 + (TG)n Simple_repeat Simple_repeat 1 24 0 842 172 41 7 chr15 36556815 36556960 -49138794 + AluJo SINE Alu 119 268 -44 195 42 0 0 chr15 36556966 36556990 -49138764 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 185 297 40 0 chr15 36558551 36558625 -49137129 - L3 LINE CR1 -612 965 889 1083 229 11 105 chr15 36558638 36558752 -49137002 - MLT1A2 LTR MaLR -51 323 200 2248 93 20 7 chr15 36558752 36559053 -49136701 - AluSc SINE Alu -4 305 1 1083 229 11 105 chr15 36559053 36559291 -49136463 - MLT1A2 LTR MaLR -174 200 4 490 290 44 41 chr15 36559566 36559907 -49135847 - L1ME4a LINE L1 -217 5904 5563 32 0 0 0 chr15 36559930 36559962 -49135792 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 36560005 36560028 -49135726 + AT_rich Low_complexity Low_complexity 1 23 0 323 305 78 7 chr15 36560028 36560169 -49135585 - L1ME4a LINE L1 -217 5904 5754 189 0 0 0 chr15 36560246 36560267 -49135487 + (T)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr15 36561201 36561236 -49134518 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr15 36561512 36561548 -49134206 + AT_rich Low_complexity Low_complexity 1 36 0 339 355 5 11 chr15 36561907 36562096 -49133658 - L1ME4a LINE L1 -1482 4664 4477 25 31 0 0 chr15 36562529 36562561 -49133193 + AT_rich Low_complexity Low_complexity 1 32 0 2776 159 13 54 chr15 36562580 36563137 -49132617 + L1MA8 LINE L1 5599 6134 -157 927 278 86 19 chr15 36563329 36563893 -49131861 - L1MC4 LINE L1 -377 7431 7019 51 0 0 0 chr15 36563979 36564030 -49131724 + AT_rich Low_complexity Low_complexity 1 51 0 2152 122 7 0 chr15 36564037 36564332 -49131422 + AluSx SINE Alu 1 297 -15 851 132 0 0 chr15 36564336 36564450 -49131304 - AluJb SINE Alu -198 114 1 731 231 133 8 chr15 36564455 36564711 -49131043 - L1MC4 LINE L1 -964 7078 6791 32 57 0 0 chr15 36565249 36565302 -49130452 + AT_rich Low_complexity Low_complexity 1 53 0 182 143 20 0 chr15 36565445 36565494 -49130260 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 274 0 0 chr15 36565507 36565569 -49130185 - L1 LINE L1 -1355 4791 4730 332 50 0 0 chr15 36565835 36565875 -49129879 + L1MA4A LINE L1 6251 6290 -13 2031 125 30 3 chr15 36566151 36566448 -49129306 - AluSx SINE Alu -7 305 1 248 303 91 20 chr15 36566551 36566727 -49129027 + MIR SINE MIR 2 241 -21 207 0 0 0 chr15 36567537 36567560 -49128194 + (A)n Simple_repeat Simple_repeat 1 23 0 321 120 0 0 chr15 36568001 36568051 -49127703 + L1ME3A LINE L1 6115 6164 -6 755 279 123 31 chr15 36568096 36568454 -49127300 - L2 LINE L2 -359 2955 2565 589 271 33 11 chr15 36568455 36568635 -49127119 - L1M2 LINE L1 -388 5782 5611 749 284 87 32 chr15 36568702 36568799 -49126955 + LTR16C LTR ERVL 85 175 -316 1717 178 30 41 chr15 36568799 36569165 -49126589 + MLT1A1 LTR MaLR 4 365 0 749 284 87 32 chr15 36569165 36569377 -49126377 + LTR16C LTR ERVL 175 411 -80 2299 107 3 0 chr15 36569866 36570176 -49125578 + AluY SINE Alu 1 311 0 366 304 88 12 chr15 36570534 36570553 -49125201 - L2 LINE L2 -9 3304 3288 2230 102 0 16 chr15 36570553 36570856 -49124898 + AluSq SINE Alu 1 298 -15 366 304 88 12 chr15 36570856 36571007 -49124747 - L2 LINE L2 -25 3288 3121 390 316 90 18 chr15 36571747 36572030 -49123724 - LTR16A1 LTR ERVL -86 379 82 185 146 21 0 chr15 36572062 36572110 -49123644 + CT-rich Low_complexity Low_complexity 2 50 0 522 207 0 0 chr15 36572123 36572292 -49123462 + CT-rich Low_complexity Low_complexity 1 169 0 263 113 19 0 chr15 36572300 36572353 -49123401 + (CA)n Simple_repeat Simple_repeat 2 55 0 2076 144 0 0 chr15 36574177 36574476 -49121278 - AluSx SINE Alu -13 299 1 269 223 52 99 chr15 36574487 36574650 -49121104 - MIR SINE MIR -56 206 47 2062 121 13 20 chr15 36574770 36575076 -49120678 + AluSx SINE Alu 1 304 -8 462 329 7 0 chr15 36575557 36575700 -49120054 - MIR3 SINE MIR -24 184 41 285 310 26 17 chr15 36575722 36575838 -49119916 - MIR SINE MIR -46 216 100 1626 196 3 20 chr15 36575894 36576195 -49119559 - AluJo SINE Alu -16 296 1 907 143 0 0 chr15 36576204 36576330 -49119424 - FLAM_C SINE Alu -6 127 2 308 271 14 79 chr15 36576487 36576627 -49119127 - L2 LINE L2 0 3313 3183 462 311 55 11 chr15 36577158 36577341 -49118413 - MER117 DNA MER1_type -6 191 1 2451 85 3 0 chr15 36577645 36577952 -49117802 + AluSp SINE Alu 1 308 -5 229 379 24 30 chr15 36578327 36578496 -49117258 + L3 LINE CR1 939 1106 -471 531 204 0 99 chr15 36578575 36578737 -49117017 - MER69 DNA AcHobo 0 2526 2381 240 318 151 40 chr15 36579030 36579282 -49116472 + L3 LINE CR1 1294 1573 -4 1227 105 6 0 chr15 36579511 36579682 -49116072 - AluSg/x SINE Alu -6 304 133 2228 93 3 3 chr15 36579682 36579972 -49115782 - AluSq SINE Alu -21 292 3 671 286 123 22 chr15 36579978 36580254 -49115500 + MLT1K LTR MaLR 245 548 -40 2306 206 34 8 chr15 36580919 36581418 -49114336 - Tigger6 DNA MER2_type 0 1597 1086 1867 162 3 10 chr15 36582027 36582323 -49113431 - AluJb SINE Alu -14 298 5 27 62 0 0 chr15 36582437 36582485 -49113269 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr15 36582609 36582633 -49113121 + AT_rich Low_complexity Low_complexity 1 24 0 808 260 103 62 chr15 36582693 36582962 -49112792 - L1ME3A LINE L1 -219 5934 5678 420 284 85 11 chr15 36582962 36583138 -49112616 - MER5A DNA MER1_type 0 189 1 808 260 103 62 chr15 36583138 36583230 -49112524 - L1ME3A LINE L1 -475 5678 5591 4202 11 4 2 chr15 36583230 36583682 -49112072 - L1PA3 LINE L1 -5 6150 5698 808 260 103 62 chr15 36583682 36583822 -49111932 - L1ME3A LINE L1 -562 5591 5411 536 283 50 24 chr15 36583844 36584141 -49111613 - L1ME3A LINE L1 -933 5196 4892 603 296 139 28 chr15 36584153 36584721 -49111033 - L1ME3A LINE L1 -1543 4586 3956 1471 278 91 25 chr15 36584768 36585573 -49110181 - L1ME3A LINE L1 -2584 3545 2632 2281 250 73 15 chr15 36585573 36586165 -49109589 + MLT1E2 LTR MaLR 1 626 0 1471 278 91 25 chr15 36586165 36586401 -49109353 - L1ME3A LINE L1 -3497 2632 2413 323 253 16 95 chr15 36586417 36586504 -49109250 - L1ME3A LINE L1 -3947 2182 2116 2279 76 3 0 chr15 36586504 36586792 -49108962 - AluY SINE Alu -22 289 1 323 253 16 95 chr15 36586792 36586894 -49108860 - L1ME3A LINE L1 -4013 2116 2008 33 43 0 0 chr15 36586983 36587030 -49108724 + AT_rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chr15 36587111 36587152 -49108602 + AT_rich Low_complexity Low_complexity 1 41 0 485 183 0 0 chr15 36587163 36587234 -49108520 - FLAM_A SINE Alu -25 117 47 681 306 125 46 chr15 36587312 36588349 -49107405 - L1MEd LINE L1 -4585 1725 488 1709 127 27 123 chr15 36588349 36588681 -49107073 - AluJb SINE Alu 0 302 3 681 306 125 46 chr15 36588681 36589210 -49106544 - L1MEd LINE L1 -5822 488 2 613 261 7 14 chr15 36591064 36591206 -49104548 + MLT1E LTR MaLR 3 143 -450 1264 223 29 41 chr15 36591232 36591577 -49104177 + MLT2C1 LTR ERVL 57 397 0 1125 219 133 58 chr15 36591579 36591977 -49103777 + MLT1E LTR MaLR 140 593 0 233 182 0 23 chr15 36592158 36592202 -49103552 - MLT1K LTR MaLR -357 231 189 21 0 0 0 chr15 36594261 36594282 -49101472 + AT_rich Low_complexity Low_complexity 1 21 0 234 250 50 0 chr15 36594718 36594778 -49100976 - L2 LINE L2 0 3272 3210 681 212 0 0 chr15 36594875 36594993 -49100761 + FLAM_C SINE Alu 1 118 -15 1936 147 23 13 chr15 36595165 36595472 -49100282 - AluSx SINE Alu 0 312 3 300 289 125 0 chr15 36595531 36595635 -49100119 - MER94 DNA DNA -7 127 11 1349 153 23 14 chr15 36595843 36596059 -49099695 - MER20 DNA MER1_type -1 218 1 30 0 0 0 chr15 36596193 36596223 -49099531 + AT_rich Low_complexity Low_complexity 1 30 0 1431 183 50 37 chr15 36596231 36596531 -49099223 + AluJo SINE Alu 1 304 -8 14496 29 2 1 chr15 36596834 36599220 -49096534 - L1PA4 LINE L1 -1 6154 3765 417 295 101 8 chr15 36600639 36600768 -49094986 + L2 LINE L2 3126 3266 -6 194 314 0 0 chr15 36601065 36601116 -49094638 + MIR SINE MIR 210 260 -2 1276 162 0 0 chr15 36601840 36602038 -49093716 + AluSg/x SINE Alu 109 306 -6 26 0 0 0 chr15 36603721 36603747 -49092007 + AT_rich Low_complexity Low_complexity 1 26 0 775 149 18 0 chr15 36603824 36603938 -49091816 - FLAM_A SINE Alu -21 121 6 480 282 11 109 chr15 36604109 36604397 -49091357 + L2 LINE L2 2397 2750 -564 236 236 112 0 chr15 36604872 36604961 -49090793 + AluS SINE Alu 2 100 -202 238 274 14 0 chr15 36605142 36605215 -49090539 - L1ME LINE L1 -420 5701 5628 258 266 0 16 chr15 36605226 36605290 -49090464 + CT-rich Low_complexity Low_complexity 3 65 0 585 180 33 0 chr15 36605305 36605427 -49090327 + LTR37A LTR ERV1 301 426 0 2381 232 74 19 chr15 36606295 36607514 -49088240 + L1MC4 LINE L1 6459 7897 -145 284 273 0 0 chr15 36607581 36607647 -49088107 - L1ME LINE L1 -503 5618 5553 632 179 172 13 chr15 36608325 36608476 -49087278 - MER5A DNA MER1_type 0 189 15 2045 117 0 14 chr15 36608492 36608782 -49086972 + AluSx SINE Alu 1 286 -26 306 0 0 0 chr15 36608789 36608823 -49086931 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1779 166 20 0 chr15 36609062 36609357 -49086397 + AluJo SINE Alu 1 301 -11 901 145 12 16 chr15 36609380 36609627 -49086127 + GA-rich Low_complexity Low_complexity 1 246 0 40 21 0 0 chr15 36609904 36609951 -49085803 + AT_rich Low_complexity Low_complexity 1 47 0 338 211 0 0 chr15 36610116 36610173 -49085581 - AluJo SINE Alu -11 291 235 1361 123 9 9 chr15 36610173 36610384 -49085370 - MER41B LTR ERV1 0 635 425 31 44 0 0 chr15 36610391 36610436 -49085318 + AT_rich Low_complexity Low_complexity 1 45 0 2975 102 16 7 chr15 36610436 36610867 -49084887 - MER41B LTR ERV1 -200 435 1 1237 194 0 37 chr15 36610868 36611110 -49084644 - AluJo SINE Alu -75 237 5 399 284 0 75 chr15 36611163 36611297 -49084457 - MIR SINE MIR -108 154 31 229 65 0 0 chr15 36611360 36611406 -49084348 - LTR66 LTR ERVL -171 439 394 220 321 0 0 chr15 36611492 36611545 -49084209 - MIR SINE MIR -163 99 47 2219 97 38 0 chr15 36611898 36612188 -49083566 - AluSx SINE Alu -11 301 1 204 40 0 0 chr15 36612696 36612721 -49083033 + (A)n Simple_repeat Simple_repeat 1 25 0 278 345 58 14 chr15 36612749 36612888 -49082866 + L2 LINE L2 2920 3064 -208 743 281 60 18 chr15 36612914 36613258 -49082496 - MLT1I LTR MaLR -19 390 1 2197 113 3 3 chr15 36613480 36613781 -49081973 - AluSx SINE Alu -9 303 3 26 64 0 0 chr15 36614670 36614717 -49081037 + AT_rich Low_complexity Low_complexity 1 47 0 300 297 84 128 chr15 36615254 36615420 -49080334 - L2 LINE L2 0 3272 3123 2343 148 31 96 chr15 36615420 36615510 -49080244 + MSTB2 LTR MaLR 2 96 -361 2501 77 0 3 chr15 36615510 36615820 -49079934 + AluSg SINE Alu 1 309 -1 2343 148 31 96 chr15 36615820 36616217 -49079537 + MSTB2 LTR MaLR 96 457 0 300 297 84 128 chr15 36616217 36616346 -49079408 - L2 LINE L2 -149 3123 2990 1870 96 67 32 chr15 36616395 36616677 -49079077 + AluSx SINE Alu 1 292 -20 456 51 0 0 chr15 36616689 36616748 -49079006 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 509 152 13 0 chr15 36616817 36616896 -49078858 + MSTC LTR MaLR 1 80 -348 925 185 0 0 chr15 36616896 36617067 -49078687 - AluJb SINE Alu 0 304 134 1964 156 0 10 chr15 36617067 36617368 -49078386 - AluJo SINE Alu -14 298 1 1476 215 71 0 chr15 36617368 36617694 -49078060 + MSTC LTR MaLR 68 416 -12 870 338 184 10 chr15 36617732 36618455 -49077299 - L2 LINE L2 -559 2755 1907 2302 98 3 3 chr15 36620076 36620382 -49075372 - AluSp SINE Alu -7 306 1 945 189 18 0 chr15 36620690 36620882 -49074872 + AluJb SINE Alu 113 307 0 738 247 31 0 chr15 36621033 36621195 -49074559 + MIR SINE MIR 48 214 -48 3743 88 14 2 chr15 36621990 36622481 -49073273 - L1PA10 LINE L1 -6 6162 5666 682 288 210 23 chr15 36622522 36622994 -49072760 + L1MC4a LINE L1 5513 6072 -1736 1850 154 34 0 chr15 36623080 36623373 -49072381 - AluJb SINE Alu -9 303 1 286 146 0 0 chr15 36624394 36624442 -49071312 + L2 LINE L2 3261 3308 -5 391 333 85 16 chr15 36624458 36624704 -49071050 - L3 LINE CR1 -4 1573 1311 1759 153 83 0 chr15 36624908 36625196 -49070558 + AluJb SINE Alu 1 312 0 243 0 0 0 chr15 36625271 36625298 -49070456 + (TG)n Simple_repeat Simple_repeat 2 28 0 2485 87 0 0 chr15 36625369 36625680 -49070074 - AluY SINE Alu 0 311 1 2363 233 157 48 chr15 36625696 36626008 -49069746 + L2 LINE L2 1157 1434 -1880 2624 213 54 6 chr15 36626008 36626549 -49069205 + MLT1F1 LTR MaLR 1 567 0 2363 233 157 48 chr15 36626549 36627142 -49068612 + L2 LINE L2 1434 2161 -1153 1124 175 25 66 chr15 36627421 36627859 -49067895 - MLT1A1 LTR MaLR 0 374 1 677 179 136 0 chr15 36627883 36628023 -49067731 - MER20 DNA MER1_type -60 159 1 234 0 0 0 chr15 36628031 36628057 -49067697 + (TG)n Simple_repeat Simple_repeat 2 27 0 478 323 41 31 chr15 36628920 36629115 -49066639 - MIR3 SINE MIR -10 198 2 2039 123 0 4 chr15 36630252 36630528 -49065226 + AluSx SINE Alu 1 275 -37 1183 49 11 27 chr15 36630535 36630718 -49065036 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1244 188 14 31 chr15 36630834 36631057 -49064697 - MER20 DNA MER1_type 0 219 1 546 321 57 12 chr15 36631405 36631651 -49064103 - L2 LINE L2 -60 3253 2997 566 264 67 19 chr15 36631709 36631917 -49063837 - L1ME3 LINE L1 -4 6158 5941 271 283 19 47 chr15 36632636 36632742 -49063012 + MIR SINE MIR 65 167 -95 200 98 0 49 chr15 36632754 36632795 -49062959 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 221 279 89 0 chr15 36633375 36633465 -49062289 - MIR SINE MIR -94 114 19 366 203 13 13 chr15 36633486 36633565 -49062189 - LTR67 LTR ERVL -6 551 473 655 248 79 65 chr15 36633566 36633629 -49062125 + L1MC4 LINE L1 7201 7262 -780 2308 101 3 7 chr15 36633629 36633935 -49061819 - AluSp SINE Alu -8 305 1 655 248 79 65 chr15 36633935 36634707 -49061047 + L1MC4 LINE L1 7262 7980 -62 268 281 0 0 chr15 36635048 36635112 -49060642 - LTR67 LTR ERVL -379 178 115 2269 102 3 6 chr15 36635290 36635603 -49060151 + AluSp SINE Alu 2 313 0 22 43 0 21 chr15 36635616 36635642 -49060112 + AT_rich Low_complexity Low_complexity 1 27 -19 1877 130 4 11 chr15 36635642 36635919 -49059835 + AluJb SINE Alu 17 291 -21 22 43 0 21 chr15 36635919 36635939 -49059815 + AT_rich Low_complexity Low_complexity 27 46 0 2174 133 3 0 chr15 36636125 36636434 -49059320 + AluSx SINE Alu 1 310 -2 735 314 64 60 chr15 36636828 36637392 -49058362 + L2 LINE L2 2380 2945 -369 1765 202 106 6 chr15 36637459 36637816 -49057938 - MSTD LTR MaLR -3 393 1 455 286 40 0 chr15 36637909 36638035 -49057719 + L2 LINE L2 3137 3267 -5 2208 123 0 0 chr15 36639048 36639348 -49056406 + AluSx SINE Alu 1 300 -12 258 274 16 0 chr15 36639647 36639709 -49056045 + MIR3 SINE MIR 106 168 -40 367 233 149 52 chr15 36640171 36640365 -49055389 + L1ME4a LINE L1 5766 5998 -123 1604 189 0 43 chr15 36640365 36640688 -49055066 + AluJo SINE Alu 1 309 -3 367 233 149 52 chr15 36640688 36640781 -49054973 + L1ME4a LINE L1 5998 6081 -40 323 246 15 0 chr15 36640908 36640973 -49054781 - MER58 DNA MER1_type 0 2420 2355 1513 164 39 68 chr15 36640986 36641369 -49054385 + THE1C LTR MaLR 1 372 -3 2378 95 0 13 chr15 36642890 36643207 -49052547 - AluSp SINE Alu 0 313 1 374 331 96 0 chr15 36643768 36643934 -49051820 - L2 LINE L2 -219 3053 2872 1000 231 77 0 chr15 36644176 36644384 -49051370 - MIR SINE MIR -32 230 7 1421 84 0 0 chr15 36644726 36644904 -49050850 - AluSp SINE Alu -135 178 1 2190 114 0 0 chr15 36646290 36646579 -49049175 + AluSx SINE Alu 1 289 -23 453 224 6 146 chr15 36646670 36646825 -49048929 + MIR SINE MIR 2 131 -77 1818 112 0 0 chr15 36646825 36647066 -49048688 + AluSq SINE Alu 47 287 -26 453 224 6 146 chr15 36647066 36647083 -49048671 + MIR SINE MIR 131 149 -59 1386 159 43 0 chr15 36647087 36647319 -49048435 + MSTB LTR MaLR 185 426 0 683 162 26 0 chr15 36647319 36647432 -49048322 - MSTD LTR MaLR -280 116 1 1996 109 7 14 chr15 36647836 36648119 -49047635 + AluSq SINE Alu 19 299 -14 287 304 74 0 chr15 36649220 36649355 -49046399 - MER117 DNA MER1_type 0 197 53 1699 144 10 41 chr15 36649876 36650168 -49045586 + AluJo SINE Alu 17 299 -13 227 265 80 84 chr15 36650952 36651190 -49044564 + L1ME4a LINE L1 5874 6110 -11 1647 123 4 4 chr15 36651217 36651445 -49044309 - AluSx SINE Alu -84 228 1 2257 101 0 7 chr15 36651719 36652027 -49043727 - AluY SINE Alu -5 306 1 2137 99 0 0 chr15 36652753 36653075 -49042679 - AluSx SINE Alu 0 332 11 1771 141 28 3 chr15 36653278 36653561 -49042193 + AluSx SINE Alu 1 290 -22 1128 210 40 98 chr15 36653748 36653843 -49041911 - MLT1L LTR MaLR -17 598 499 2089 112 0 26 chr15 36653843 36654148 -49041606 + AluY SINE Alu 1 297 -14 1128 210 40 98 chr15 36654148 36654480 -49041274 - MLT1L LTR MaLR -116 499 196 249 147 27 120 chr15 36654536 36654611 -49041143 - MLT1L LTR MaLR -543 72 5 2042 117 0 52 chr15 36654657 36654981 -49040773 - AluSg SINE Alu -3 307 1 180 0 0 0 chr15 36655692 36655712 -49040042 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2292 111 0 0 chr15 36655890 36656188 -49039566 - AluSx SINE Alu -14 298 1 364 278 63 16 chr15 36656222 36656348 -49039406 - MER5A DNA MER1_type -30 159 28 2286 89 7 3 chr15 36656732 36657024 -49038730 + AluSp SINE Alu 1 293 -20 505 147 129 60 chr15 36657131 36657247 -49038507 - L2 LINE L2 -21 3292 3169 2225 110 7 3 chr15 36657519 36657820 -49037934 + AluSp SINE Alu 1 302 -11 807 127 35 12 chr15 36657820 36657993 -49037761 + GA-rich Low_complexity Low_complexity 1 177 0 1250 149 77 5 chr15 36658087 36658309 -49037445 + AluJo SINE Alu 48 285 -27 2104 147 0 0 chr15 36658377 36658683 -49037071 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr15 36660366 36660392 -49035362 + AT_rich Low_complexity Low_complexity 1 26 0 775 149 18 0 chr15 36660469 36660583 -49035171 - FLAM_A SINE Alu -21 121 6 480 282 11 109 chr15 36660754 36661042 -49034712 + L2 LINE L2 2397 2750 -564 1994 143 19 7 chr15 36661524 36661832 -49033922 + AluSx SINE Alu 1 312 0 2109 126 7 3 chr15 36661882 36662184 -49033570 + AluSq SINE Alu 1 303 -10 2438 221 22 19 chr15 36662365 36662904 -49032850 + MLT1E3 LTR MaLR 47 618 -6 197 244 70 43 chr15 36663194 36663309 -49032445 + L2 LINE L2 3099 3216 -97 3197 206 61 10 chr15 36663389 36664073 -49031681 + L1ME1 LINE L1 5448 6166 0 2327 87 3 7 chr15 36664089 36664398 -49031356 + AluSq SINE Alu 1 308 -5 27 49 0 0 chr15 36664539 36664580 -49031174 + AT_rich Low_complexity Low_complexity 1 41 0 2184 125 0 0 chr15 36664645 36664948 -49030806 - AluSx SINE Alu -9 303 1 22 0 0 0 chr15 36666387 36666409 -49029345 + AT_rich Low_complexity Low_complexity 1 22 0 2098 108 31 7 chr15 36666558 36666846 -49028908 + AluSx SINE Alu 1 295 -17 22 70 0 0 chr15 36668360 36668403 -49027351 + AT_rich Low_complexity Low_complexity 1 43 0 2106 115 0 0 chr15 36670108 36670394 -49025360 + AluSx SINE Alu 1 286 -26 230 326 76 0 chr15 36670966 36671058 -49024696 - MIR SINE MIR -74 134 36 25 31 0 0 chr15 36671774 36671806 -49023948 + AT_rich Low_complexity Low_complexity 1 32 0 2322 96 7 0 chr15 36672622 36672923 -49022831 + AluSx SINE Alu 1 303 -9 464 125 0 0 chr15 36673189 36673253 -49022501 - AluSp/q SINE Alu -12 301 238 271 231 46 100 chr15 36673473 36673571 -49022183 + L2 LINE L2 3186 3277 -36 5168 113 32 30 chr15 36673571 36674348 -49021406 - MER4E LTR ERV1 0 779 1 271 231 46 100 chr15 36674348 36674379 -49021375 + L2 LINE L2 3277 3308 -5 586 167 83 8 chr15 36674415 36674522 -49021232 - Tigger7 DNA MER2_type 0 2487 2372 1626 187 60 55 chr15 36674522 36674907 -49020847 + MSTB LTR MaLR 1 387 -39 2108 137 3 10 chr15 36676815 36677129 -49018625 - AluSx SINE Alu 0 312 1 2194 103 6 26 chr15 36677532 36677843 -49017911 - AluSx SINE Alu -7 305 1 2103 95 53 3 chr15 36677975 36678260 -49017494 + AluSx SINE Alu 1 299 -13 826 105 9 9 chr15 36678260 36678374 -49017380 - AluSq/x SINE Alu -198 114 1 289 268 57 81 chr15 36678484 36678607 -49017147 - MIR3 SINE MIR -7 201 82 1804 157 4 0 chr15 36679586 36679866 -49015888 + AluSx SINE Alu 1 281 -31 1979 96 50 7 chr15 36679891 36680173 -49015581 - AluSx SINE Alu -18 294 1 343 259 129 24 chr15 36680174 36680344 -49015410 - L1MC5 LINE L1 -50 7911 7724 2288 107 0 0 chr15 36680424 36680722 -49015032 - AluSg SINE Alu -12 298 1 267 320 39 45 chr15 36680811 36680967 -49014787 + MIR3 SINE MIR 51 205 -3 4153 87 31 0 chr15 36681719 36682269 -49013485 - L1PA10 LINE L1 -17 6151 5585 1836 86 4 8 chr15 36682389 36682646 -49013108 + L1PA14 LINE L1 5599 5854 -307 183 42 0 0 chr15 36683687 36683711 -49012043 + (A)n Simple_repeat Simple_repeat 1 24 0 1877 163 0 10 chr15 36684009 36684315 -49011439 + AluJo SINE Alu 2 304 -8 763 140 0 26 chr15 36684411 36684525 -49011229 + AluSq SINE Alu 144 254 -59 259 301 192 21 chr15 36684552 36684745 -49011009 - L2 LINE L2 -456 2858 2633 430 209 219 50 chr15 36684824 36684897 -49010857 - MIR SINE MIR -23 239 180 2129 110 10 0 chr15 36684897 36685196 -49010558 + AluSq SINE Alu 1 302 -11 430 209 219 50 chr15 36685196 36685327 -49010427 - MIR SINE MIR -82 180 11 651 297 117 50 chr15 36685328 36685826 -49009928 - L2 LINE L2 -746 2568 2022 1703 169 17 7 chr15 36685826 36685944 -49009810 + AluJb SINE Alu 1 116 -196 225 0 0 0 chr15 36685944 36685969 -49009785 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1703 169 17 7 chr15 36685969 36686152 -49009602 + AluJb SINE Alu 116 305 -7 651 297 117 50 chr15 36686152 36686249 -49009505 - L2 LINE L2 -1292 2022 1933 493 102 25 195 chr15 36686373 36686491 -49009263 - FLAM_C SINE Alu -25 118 21 334 0 0 0 chr15 36686520 36686560 -49009194 + L1P3 LINE L1 5646 5685 -487 1519 166 19 19 chr15 36686766 36687037 -49008717 - AluJb SINE Alu -41 271 1 377 226 348 12 chr15 36687179 36687343 -49008411 - MIR SINE MIR 0 262 44 233 250 29 0 chr15 36687866 36687934 -49007820 - L1MC/D LINE L1 -1927 5881 5812 926 164 36 11 chr15 36688266 36688490 -49007264 + AluJb SINE Alu 1 300 -12 373 250 69 31 chr15 36688516 36688676 -49007078 - L1MC/D LINE L1 -2283 5525 5360 1227 173 28 85 chr15 36688676 36688959 -49006795 - AluJo SINE Alu -8 304 38 243 329 34 29 chr15 36689152 36689359 -49006395 - L1MC/D LINE L1 -978 5168 4961 1703 144 9 82 chr15 36689417 36689736 -49006018 + AluJb SINE Alu 5 300 -12 2022 134 7 7 chr15 36689736 36690042 -49005712 + AluSg SINE Alu 1 306 -4 606 207 0 14 chr15 36690965 36691105 -49004649 + AluSc SINE Alu 157 294 -15 34 24 0 0 chr15 36691456 36691497 -49004257 + AT_rich Low_complexity Low_complexity 1 41 0 915 160 0 7 chr15 36691914 36692064 -49003690 - FRAM SINE Alu -12 164 16 597 135 0 31 chr15 36692068 36692164 -49003590 + FRAM SINE Alu 73 165 -11 521 122 0 0 chr15 36692231 36692305 -49003449 + AluJ/FLAM SINE Alu 2 75 -237 574 134 0 0 chr15 36692305 36692387 -49003367 - AluJb SINE Alu -95 217 136 861 208 6 12 chr15 36692501 36692669 -49003085 + FRAM SINE Alu 1 167 -9 747 209 0 0 chr15 36692746 36692875 -49002879 - FLAM_A SINE Alu -2 131 3 2115 114 7 0 chr15 36692911 36693200 -49002554 - AluSq SINE Alu -22 291 1 421 259 123 25 chr15 36693287 36693523 -49002231 - L2 LINE L2 -5 3308 3050 907 185 0 23 chr15 36693523 36693696 -49002058 + FRAM SINE Alu 1 169 -7 222 62 0 0 chr15 36693716 36693748 -49002006 + (CA)n Simple_repeat Simple_repeat 2 33 0 428 262 93 63 chr15 36693752 36693809 -49001945 - L2 LINE L2 -253 3060 3006 1706 172 17 14 chr15 36693809 36694105 -49001649 + AluJo SINE Alu 1 297 -15 428 262 93 63 chr15 36694105 36694284 -49001470 - L2 LINE L2 -307 3006 2817 1925 123 3 48 chr15 36694904 36695214 -49000540 + AluSx SINE Alu 1 296 -16 247 205 51 51 chr15 36695246 36695317 -49000437 + MLT1J LTR MaLR 376 446 -65 2149 174 23 23 chr15 36695317 36695713 -49000041 - MER57A LTR ERV1 0 403 8 2882 180 73 44 chr15 36695866 36696531 -48999223 + LTR8A LTR ERV1 9 727 0 872 205 111 156 chr15 36696636 36696797 -48998957 - LTR8A LTR ERV1 -4 723 556 2019 134 79 18 chr15 36696797 36697140 -48998614 - THE1B LTR MaLR 0 364 1 872 205 111 156 chr15 36697140 36697532 -48998222 - LTR8A LTR ERV1 -171 556 211 4039 109 4 0 chr15 36697532 36698084 -48997670 + MER41A LTR ERV1 1 554 0 872 205 111 156 chr15 36698084 36698286 -48997468 - LTR8A LTR ERV1 -516 211 1 230 75 100 25 chr15 36698618 36698655 -48997099 + LTR29 LTR ERV1 1 40 -582 1837 164 22 11 chr15 36698655 36699015 -48996739 + LTR8A LTR ERV1 1 364 -363 1679 145 11 4 chr15 36699220 36699482 -48996272 + LTR29 LTR ERV1 359 622 0 3459 150 44 68 chr15 36699520 36700226 -48995528 + LTR8 LTR ERV1 2 690 -1 2139 128 0 3 chr15 36700370 36700660 -48995094 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 36700701 36700723 -48995031 + AT_rich Low_complexity Low_complexity 1 22 0 977 168 174 90 chr15 36700821 36701018 -48994736 + LTR48 LTR ERV1 1 237 -550 1521 207 3 17 chr15 36701018 36701317 -48994437 + AluJo SINE Alu 1 295 -17 977 168 174 90 chr15 36701317 36701441 -48994313 + LTR48 LTR ERV1 237 349 -438 2536 97 39 3 chr15 36701449 36701922 -48993832 + L1PB1 LINE L1 5151 5641 -510 204 40 0 0 chr15 36701923 36701948 -48993806 + (TG)n Simple_repeat Simple_repeat 2 26 0 2003 154 0 0 chr15 36701971 36702264 -48993490 + AluSx SINE Alu 16 308 -4 2357 102 0 0 chr15 36702264 36702588 -48993166 + L1PB1 LINE L1 5828 6151 0 180 0 0 0 chr15 36702591 36702611 -48993143 + (CAATA)n Simple_repeat Simple_repeat 4 23 0 746 234 27 32 chr15 36702701 36703029 -48992725 + LTR48 LTR ERV1 384 787 0 255 299 26 0 chr15 36703714 36703791 -48991963 - L2 LINE L2 -209 3063 2985 961 94 123 14 chr15 36704068 36704206 -48991548 - AluSp SINE Alu -160 153 1 1889 138 10 16 chr15 36704932 36705236 -48990518 - AluSx SINE Alu -6 306 5 2299 108 10 3 chr15 36706153 36706458 -48989296 - AluSc SINE Alu -2 307 1 435 253 108 32 chr15 36706664 36706822 -48988932 + MARNA DNA Mariner 9 178 -408 215 280 61 38 chr15 36707193 36707325 -48988429 + L2 LINE L2 3164 3298 -15 1321 170 65 29 chr15 36707328 36707604 -48988150 + AluSx SINE Alu 1 286 -26 627 141 0 0 chr15 36707639 36707731 -48988023 + FLAM_C SINE Alu 33 124 -19 213 121 0 0 chr15 36707972 36708005 -48987749 + (A)n Simple_repeat Simple_repeat 1 33 0 2409 81 10 0 chr15 36708038 36708335 -48987419 + AluSg1 SINE Alu 1 300 -9 1107 115 0 0 chr15 36708640 36708796 -48986958 + AluSg/x SINE Alu 153 308 -2 1777 137 100 0 chr15 36709010 36709280 -48986474 - AluSx SINE Alu -15 297 1 998 192 16 26 chr15 36709285 36709478 -48986276 - MER20 DNA MER1_type -25 194 4 991 211 26 34 chr15 36709617 36709913 -48985841 - LTR37B LTR ERV1 0 468 146 325 172 76 140 chr15 36709998 36710035 -48985719 - LTR37B LTR ERV1 -316 152 114 1102 180 47 9 chr15 36710035 36710246 -48985508 + MER20 DNA MER1_type 1 219 0 325 172 76 140 chr15 36710246 36710271 -48985483 - LTR37B LTR ERV1 -354 114 89 2260 115 3 0 chr15 36710271 36710576 -48985178 + AluSx SINE Alu 1 306 -6 1864 129 14 4 chr15 36710585 36710863 -48984891 + AluSg SINE Alu 21 301 -9 325 172 76 140 chr15 36710863 36710946 -48984808 - LTR37B LTR ERV1 -387 81 6 1335 127 0 227 chr15 36711044 36711431 -48984323 - AluSx SINE Alu -9 303 5 542 114 136 0 chr15 36712106 36712194 -48983560 + LTR48B LTR ERV1 28 127 -517 492 133 22 44 chr15 36712209 36712389 -48983365 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 0 0 0 chr15 36712409 36712434 -48983320 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 4527 191 96 66 chr15 36712598 36712700 -48983054 + LTR49-int LTR ERV1 3864 3962 -2369 1669 194 0 13 chr15 36712700 36713004 -48982750 - AluJo SINE Alu -12 300 1 4527 191 96 66 chr15 36713004 36714094 -48981660 + LTR49-int LTR ERV1 3962 5109 -1222 1901 163 0 3 chr15 36714094 36714383 -48981371 - AluJo SINE Alu -24 288 1 4527 191 96 66 chr15 36714383 36714649 -48981105 + LTR49-int LTR ERV1 5109 5366 -965 2209 116 0 7 chr15 36714649 36714952 -48980802 - AluSx SINE Alu -9 303 3 279 346 19 0 chr15 36715008 36715115 -48980639 + L1P4 LINE L1 5360 5468 -693 22 35 0 0 chr15 36715312 36715341 -48980413 + AT_rich Low_complexity Low_complexity 1 29 0 3422 250 87 35 chr15 36715502 36715775 -48979979 - L2 LINE L2 -508 2806 2549 1683 161 0 8 chr15 36715775 36716035 -48979719 - AluJb SINE Alu -54 258 1 3422 250 87 35 chr15 36716035 36717070 -48978684 - L2 LINE L2 -765 2549 1426 1613 193 11 0 chr15 36717070 36717340 -48978414 - AluJo SINE Alu -39 273 1 1634 200 51 102 chr15 36717351 36717881 -48977873 - L1ME3A LINE L1 -4 6166 5664 9630 114 73 105 chr15 36717883 36718487 -48977267 - Tigger1 DNA MER2_type 0 2418 1796 2058 147 0 0 chr15 36718487 36718787 -48976967 - AluSx SINE Alu -12 300 1 9630 114 73 105 chr15 36718787 36718910 -48976844 - Tigger1 DNA MER2_type -622 1796 1671 2091 138 13 0 chr15 36718910 36719214 -48976540 - AluSx SINE Alu -4 308 1 9630 114 73 105 chr15 36719214 36719413 -48976341 - Tigger1 DNA MER2_type -747 1671 1467 2016 129 14 0 chr15 36719413 36719692 -48976062 - AluSx SINE Alu -29 283 1 2159 134 0 0 chr15 36719701 36719999 -48975755 - AluSx SINE Alu -14 298 1 9630 114 73 105 chr15 36719999 36721059 -48974695 - Tigger1 DNA MER2_type -959 1459 484 1800 167 0 29 chr15 36721059 36721370 -48974384 - AluJb SINE Alu -10 302 1 414 124 0 3 chr15 36721371 36721442 -48974312 - L1ME3A LINE L1 -516 5667 5600 462 167 0 0 chr15 36721442 36721526 -48974228 + (CA)n Simple_repeat Simple_repeat 1 84 0 1756 156 7 17 chr15 36721536 36721825 -48973929 - AluJo SINE Alu -24 288 3 885 173 35 15 chr15 36721826 36722023 -48973731 - L1M3 LINE L1 -567 5616 5416 767 263 199 18 chr15 36721998 36722721 -48973033 - L1MEc LINE L1 -4819 1577 724 * 954 296 82 32 chr15 36722892 36723358 -48972396 - L1MEc LINE L1 -5873 523 35 2216 102 3 3 chr15 36724141 36724435 -48971319 + AluSx SINE Alu 1 294 -18 664 150 50 33 chr15 36724970 36725090 -48970664 - FLAM_C SINE Alu -11 132 11 2270 68 20 7 chr15 36726357 36726649 -48969105 - AluY SINE Alu -14 297 2 2145 130 0 0 chr15 36726651 36726943 -48968811 - AluSx SINE Alu -20 292 1 611 160 149 29 chr15 36727350 36727525 -48968229 - MER3 DNA MER1_type 0 209 14 640 173 0 0 chr15 36727970 36728074 -48967680 + FLAM_C SINE Alu 7 110 -33 21 0 0 0 chr15 36728074 36728095 -48967659 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 36728437 36728459 -48967295 + AT_rich Low_complexity Low_complexity 1 22 0 2186 111 7 0 chr15 36729660 36729958 -48965796 - AluSx SINE Alu -12 300 1 2051 123 4 0 chr15 36729990 36730266 -48965488 - AluSx SINE Alu -30 282 6 773 140 18 0 chr15 36730292 36730406 -48965348 - FLAM_C SINE Alu -25 118 3 2117 133 3 3 chr15 36730480 36730789 -48964965 - AluSx SINE Alu -3 309 1 2137 125 0 3 chr15 36730791 36731087 -48964667 - AluSx SINE Alu -17 295 1 2134 131 0 0 chr15 36731962 36732252 -48963502 + AluSg SINE Alu 1 290 -20 252 241 194 29 chr15 36734897 36735067 -48960687 - MIR SINE MIR -9 253 56 261 146 0 0 chr15 36735236 36735284 -48960470 + (A)n Simple_repeat Simple_repeat 1 48 0 1871 149 0 17 chr15 36736526 36736827 -48958927 - AluJb SINE Alu -16 296 1 968 233 296 25 chr15 36736829 36737400 -48958354 - LTR50 LTR ERVL -52 743 18 4291 92 9 5 chr15 36737564 36738116 -48957638 + MER41A LTR ERV1 1 554 0 1622 118 100 33 chr15 36738406 36738677 -48957077 - AluJo SINE Alu -23 289 1 1433 176 124 0 chr15 36738683 36738833 -48956921 - AluJo SINE Alu -2 300 170 432 51 0 0 chr15 36738833 36738892 -48956862 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1433 176 124 0 chr15 36738892 36739008 -48956746 - AluJo SINE Alu -132 170 1 435 340 45 32 chr15 36739132 36739379 -48956375 + MIR SINE MIR 12 261 -1 266 174 49 14 chr15 36741085 36741230 -48954524 + GA-rich Low_complexity Low_complexity 1 150 0 264 314 93 86 chr15 36741732 36742012 -48953742 - L2 LINE L2 -25 3247 2966 312 302 311 25 chr15 36742119 36742814 -48952940 - L2 LINE L2 -557 2757 1864 22 0 0 0 chr15 36742870 36742892 -48952862 + AT_rich Low_complexity Low_complexity 1 22 0 2034 119 14 3 chr15 36743016 36743311 -48952443 + AluSx SINE Alu 1 298 -14 2034 147 3 0 chr15 36743324 36743617 -48952137 - AluSx SINE Alu -18 294 1 672 99 40 0 chr15 36743635 36743736 -48952018 - L1PB1 LINE L1 -119 6032 5928 188 65 0 32 chr15 36744244 36744275 -48951479 + (TA)n Simple_repeat Simple_repeat 1 30 0 226 213 16 16 chr15 36744302 36744363 -48951391 + (TA)n Simple_repeat Simple_repeat 1 61 0 1549 190 0 21 chr15 36744364 36744653 -48951101 - AluJb SINE Alu -24 288 6 1977 145 31 0 chr15 36744840 36745129 -48950625 - AluSx SINE Alu -14 298 1 2384 86 20 3 chr15 36745386 36745690 -48950064 + AluSg SINE Alu 1 309 -1 2536 64 0 0 chr15 36745912 36746223 -48949531 + AluY SINE Alu 1 311 0 22 0 0 0 chr15 36746937 36746959 -48948795 + AT_rich Low_complexity Low_complexity 1 22 0 258 247 185 0 chr15 36746966 36747047 -48948707 + L2 LINE L2 3178 3273 -40 210 227 160 13 chr15 36747045 36747120 -48948634 + L2 LINE L2 3180 3265 -7 * 2322 105 3 0 chr15 36748430 36748736 -48947018 - AluSp SINE Alu -6 307 1 1564 177 25 11 chr15 36748952 36749234 -48946520 - AluJo SINE Alu -18 294 9 22 35 0 0 chr15 36749586 36749615 -48946139 + AT_rich Low_complexity Low_complexity 1 29 0 214 369 62 0 chr15 36749980 36750110 -48945644 - L2 LINE L2 -16 3297 3160 196 275 0 0 chr15 36750507 36750547 -48945207 - L2 LINE L2 -7 3265 3226 2810 280 95 17 chr15 36750640 36751914 -48943840 + L2 LINE L2 1923 3308 -5 3503 245 161 29 chr15 36751980 36752051 -48943703 + L2 LINE L2 1396 1456 -1857 1032 141 212 20 chr15 36752051 36752249 -48943505 - MER46A DNA MER2_type 0 236 1 3503 245 161 29 chr15 36752249 36753871 -48941883 + L2 LINE L2 1456 3312 -1 2171 87 23 3 chr15 36755136 36755436 -48940318 + AluSq SINE Alu 1 306 -7 2153 96 17 17 chr15 36755826 36756128 -48939626 + AluSx SINE Alu 1 302 -10 258 246 115 31 chr15 36756269 36756399 -48939355 - Charlie8 DNA MER1_type -2142 275 135 846 146 0 8 chr15 36756400 36756530 -48939224 + FLAM_C SINE Alu 1 129 -14 1487 81 70 4 chr15 36756548 36756806 -48938948 + AluY SINE Alu 1 275 -36 2157 119 7 0 chr15 36757025 36757327 -48938427 - AluSx SINE Alu -8 304 1 2075 96 15 0 chr15 36757519 36757790 -48937964 + AluSx SINE Alu 31 305 -7 1627 166 24 10 chr15 36757798 36758093 -48937661 + AluJb SINE Alu 1 299 -13 34 0 0 0 chr15 36758193 36758227 -48937527 + AT_rich Low_complexity Low_complexity 1 34 0 2023 141 3 3 chr15 36758278 36758583 -48937171 - AluSx SINE Alu -7 305 1 180 152 0 0 chr15 36758678 36758711 -48937043 + (TA)n Simple_repeat Simple_repeat 1 33 0 330 244 106 8 chr15 36759140 36759263 -48936491 - MIR SINE MIR 0 262 128 994 164 12 0 chr15 36759463 36759628 -48936126 - AluSg/x SINE Alu -16 294 128 315 191 0 0 chr15 36759628 36759696 -48936058 + CT-rich Low_complexity Low_complexity 2 69 0 639 133 168 0 chr15 36759697 36759810 -48935944 - FLAM_C SINE Alu 0 133 2 509 218 309 0 chr15 36759899 36760142 -48935612 + MER5C DNA MER1_type 7 324 0 1928 119 33 3 chr15 36760260 36760563 -48935191 - AluSx SINE Alu 0 312 1 181 125 21 21 chr15 36760967 36761015 -48934739 + (CCG)n Simple_repeat Simple_repeat 3 50 0 1808 102 0 74 chr15 36762739 36763024 -48932730 + AluSx SINE Alu 36 299 -13 2213 101 3 10 chr15 36763333 36763640 -48932114 - AluSx SINE Alu -7 305 1 728 202 8 0 chr15 36763987 36764106 -48931648 - FLAM_C SINE Alu -22 121 2 2163 121 0 3 chr15 36764844 36765157 -48930597 - AluSx SINE Alu 0 312 1 262 211 19 0 chr15 36765465 36765517 -48930237 - L2 LINE L2 -30 3242 3190 2189 83 0 7 chr15 36766564 36766840 -48928914 - AluSx SINE Alu -38 274 1 2329 91 0 0 chr15 36768035 36768322 -48927432 - AluSg SINE Alu -17 293 7 201 98 24 24 chr15 36768512 36768553 -48927201 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1869 136 20 7 chr15 36768628 36768923 -48926831 + AluSx SINE Alu 1 299 -13 906 155 87 19 chr15 36769492 36769653 -48926101 + AluJo SINE Alu 17 188 -124 1599 150 87 8 chr15 36769672 36769938 -48925816 + AluJo SINE Alu 1 287 -25 1338 147 18 85 chr15 36773881 36774153 -48921601 + AluJb SINE Alu 1 254 -58 21 0 0 0 chr15 36774187 36774208 -48921546 + AT_rich Low_complexity Low_complexity 1 21 0 230 241 0 51 chr15 36774251 36774330 -48921424 - L1ME2 LINE L1 -19 6145 6071 1037 188 19 0 chr15 36774600 36774807 -48920947 - L1ME2 LINE L1 -289 5875 5665 1998 109 14 4 chr15 36774821 36775117 -48920637 - AluSg SINE Alu 0 299 1 2434 82 0 3 chr15 36775173 36775478 -48920276 - AluSg SINE Alu -6 304 1 2149 130 0 9 chr15 36776325 36776640 -48919114 - AluSx SINE Alu 0 312 1 1410 177 34 37 chr15 36776728 36777022 -48918732 + AluJo SINE Alu 6 298 -14 2178 86 21 10 chr15 36777033 36777323 -48918431 + AluSg SINE Alu 2 294 -16 1419 209 12 0 chr15 36777901 36778160 -48917594 + AluJb SINE Alu 28 289 -23 1397 186 0 0 chr15 36778357 36778593 -48917161 - AluJb SINE Alu -22 290 55 505 222 157 27 chr15 36778788 36778973 -48916781 - L1MC5 LINE L1 -48 7913 7705 2473 58 10 10 chr15 36779339 36779647 -48916107 - AluSp SINE Alu -5 308 1 30 0 0 0 chr15 36779670 36779700 -48916054 + AT_rich Low_complexity Low_complexity 1 30 0 1951 162 0 3 chr15 36779980 36780289 -48915465 - AluJb SINE Alu -2 310 3 23 0 0 0 chr15 36781185 36781208 -48914546 + AT_rich Low_complexity Low_complexity 1 23 0 969 154 0 0 chr15 36781208 36781364 -48914390 - L1MA5 LINE L1 -1 6299 6144 23 0 0 0 chr15 36781935 36781958 -48913796 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr15 36783719 36783747 -48912007 + AT_rich Low_complexity Low_complexity 1 28 0 2211 110 0 0 chr15 36783761 36784053 -48911701 - AluSq SINE Alu -21 292 1 29 28 0 0 chr15 36784465 36784501 -48911253 + AT_rich Low_complexity Low_complexity 1 36 0 1939 155 10 0 chr15 36784810 36785107 -48910647 - AluJb SINE Alu -12 300 1 2201 106 0 0 chr15 36785169 36785453 -48910301 - AluSg SINE Alu -26 284 1 2448 76 0 0 chr15 36785756 36786057 -48909697 + AluY SINE Alu 1 301 -10 2167 95 17 0 chr15 36789086 36789381 -48906373 - AluSg SINE Alu -10 300 1 1787 147 35 3 chr15 36890573 36890859 -48804895 + AluJb SINE Alu 1 295 -17 2110 119 0 0 chr15 36891431 36891725 -48804029 + AluSx SINE Alu 1 294 -18 1127 138 62 97 chr15 36892298 36892426 -48803328 + AluJo SINE Alu 11 142 -170 1997 129 6 26 chr15 36892426 36892737 -48803017 - AluSx SINE Alu -7 305 1 1127 138 62 97 chr15 36892737 36892898 -48802856 + AluJo SINE Alu 142 290 -22 1931 107 13 10 chr15 36893323 36893622 -48802132 + AluSg SINE Alu 1 300 -10 26 0 0 0 chr15 36893688 36893714 -48802040 + AT_rich Low_complexity Low_complexity 1 26 0 269 197 14 0 chr15 36893947 36894018 -48801736 + CT-rich Low_complexity Low_complexity 1 72 0 307 212 121 30 chr15 36894018 36894117 -48801637 - MIR SINE MIR -34 228 121 2193 104 0 10 chr15 36895832 36896141 -48799613 + AluSc SINE Alu 1 306 -3 454 245 180 29 chr15 36896152 36896430 -48799324 + L1MC4a LINE L1 5607 5926 -1882 2279 81 3 7 chr15 36896981 36897289 -48798465 + AluSc SINE Alu 1 307 -2 1393 212 55 41 chr15 36897572 36897935 -48797819 - MLT1B LTR MaLR 0 390 23 1843 129 0 42 chr15 36898310 36898620 -48797134 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr15 36898620 36898644 -48797110 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr15 36899488 36899517 -48796237 + (A)n Simple_repeat Simple_repeat 1 29 0 1996 121 3 13 chr15 36899519 36899655 -48796099 + AluSq SINE Alu 1 137 -176 2221 97 0 0 chr15 36899655 36899955 -48795799 + AluSx SINE Alu 1 300 -12 1996 121 3 13 chr15 36899955 36900116 -48795638 + AluSq SINE Alu 137 295 -18 33 0 0 0 chr15 36900133 36900166 -48795588 + AT_rich Low_complexity Low_complexity 1 33 0 1087 149 0 6 chr15 36900228 36900403 -48795351 + FRAM SINE Alu 1 170 -6 261 353 52 7 chr15 36900451 36900587 -48795167 - MIR SINE MIR -19 243 102 1834 207 56 11 chr15 36901542 36901986 -48793768 + MLT1C LTR MaLR 1 464 -3 447 118 13 53 chr15 36902439 36902515 -48793239 - Charlie3 DNA MER1_type -4 2706 2634 341 281 23 39 chr15 36903096 36903224 -48792530 - MIR SINE MIR -20 242 117 395 257 28 18 chr15 36903633 36903742 -48792012 + MER94 DNA DNA 1 110 -24 274 325 49 8 chr15 36903822 36903945 -48791809 + MIR SINE MIR 65 192 -70 584 196 5 111 chr15 36904579 36904651 -48791103 + MER104 DNA Tc2 3 81 -1817 2073 109 10 0 chr15 36904651 36904945 -48790809 + AluSq SINE Alu 3 299 -14 584 196 5 111 chr15 36904945 36905061 -48790693 + MER104 DNA Tc2 81 171 -9 21 0 0 0 chr15 36905133 36905154 -48790600 + AT_rich Low_complexity Low_complexity 1 21 0 1977 128 0 0 chr15 36905572 36905861 -48789893 - AluSx SINE Alu -2 310 22 992 171 12 0 chr15 36906058 36906222 -48789532 + FRAM SINE Alu 1 166 0 1616 152 4 11 chr15 36906804 36907080 -48788674 + AluJo SINE Alu 1 274 -38 396 189 0 133 chr15 36907276 36907301 -48788453 + L1MB5 LINE L1 6051 6078 -96 2210 107 3 0 chr15 36907301 36907611 -48788143 + AluY SINE Alu 1 311 0 396 189 0 133 chr15 36907611 36907663 -48788091 + L1MB5 LINE L1 6078 6103 -71 1737 172 0 3 chr15 36907663 36907971 -48787783 - AluJo SINE Alu -5 307 1 396 189 0 133 chr15 36907971 36908035 -48787719 + L1MB5 LINE L1 6103 6174 0 488 16 16 0 chr15 36908145 36908206 -48787548 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 726 87 0 0 chr15 36908266 36908369 -48787385 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 451 245 199 7 chr15 36908848 36908999 -48786755 + MER5A DNA MER1_type 10 189 0 2631 16 7 3 chr15 36909057 36909367 -48786387 + AluY SINE Alu 1 311 0 754 228 71 47 chr15 36909997 36910420 -48785334 - LTR48B LTR ERV1 0 644 123 471 240 0 0 chr15 36910407 36910503 -48785251 - MER34 LTR ERV1 -446 96 1 * 2296 75 0 3 chr15 36910530 36910824 -48784930 - AluYa5 SINE Alu -18 293 1 2197 104 0 3 chr15 36910826 36911125 -48784629 - AluSg SINE Alu -11 299 2 1189 220 124 23 chr15 36911132 36911484 -48784270 + MLT1D LTR MaLR 123 505 0 489 248 33 0 chr15 36911591 36911712 -48784042 - LTR67 LTR ERVL -52 505 381 229 254 30 0 chr15 36911744 36911811 -48783943 - L1MC4 LINE L1 -2 8040 7972 749 347 37 13 chr15 36911814 36912197 -48783557 - LTR16C LTR ERVL -3 488 97 804 255 51 0 chr15 36912464 36912680 -48783074 + Charlie2 DNA MER1_type 2623 2849 -13 273 29 0 0 chr15 36913091 36913125 -48782629 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2044 117 0 37 chr15 36913133 36913457 -48782297 + AluSx SINE Alu 1 312 0 2160 65 0 7 chr15 36913632 36913909 -48781845 - L1PA5 LINE L1 -64 6090 5816 519 296 59 12 chr15 36914486 36914655 -48781099 + MIR SINE MIR 7 183 -79 2005 110 6 25 chr15 36915390 36915708 -48780046 + AluSx SINE Alu 1 312 0 350 25 0 0 chr15 36916496 36916536 -48779218 + (T)n Simple_repeat Simple_repeat 1 40 0 294 245 189 0 chr15 36918191 36918297 -48777457 - MLT1J LTR MaLR -73 438 313 462 250 25 17 chr15 36918387 36918507 -48777247 - MLT1J LTR MaLR -358 153 33 1923 153 0 3 chr15 36918716 36919024 -48776730 + AluSx SINE Alu 1 307 -5 738 277 13 43 chr15 36919084 36919319 -48776435 + MER90 LTR ERV1 1 228 -386 220 264 94 66 chr15 36919849 36919928 -48775826 + MIR SINE MIR 60 144 -118 2117 128 0 0 chr15 36919928 36920241 -48775513 + AluSq SINE Alu 1 313 0 220 264 94 66 chr15 36920241 36920267 -48775487 + MIR SINE MIR 144 168 -94 1760 91 4 4 chr15 36920771 36921013 -48774741 - AluSq SINE Alu -71 242 1 364 270 103 38 chr15 36921195 36921335 -48774419 + MIR3 SINE MIR 33 181 -27 318 281 62 16 chr15 36921378 36921625 -48774129 - MARNA DNA Mariner -16 570 261 2114 104 3 3 chr15 36921675 36921973 -48773781 - AluSq SINE Alu -15 298 1 658 235 78 0 chr15 36921984 36922163 -48773591 - AluJo SINE Alu 0 312 120 225 0 0 0 chr15 36922692 36922717 -48773037 + (A)n Simple_repeat Simple_repeat 1 25 0 326 210 108 68 chr15 36923514 36923533 -48772221 + Charlie8 DNA MER1_type 89 106 -224 2246 93 3 0 chr15 36923533 36923835 -48771919 + AluSq SINE Alu 1 303 -10 326 210 108 68 chr15 36923835 36923965 -48771789 + Charlie8 DNA MER1_type 106 223 -107 880 79 40 8 chr15 36924029 36924155 -48771599 + AluSg SINE Alu 1 130 -180 1946 109 0 7 chr15 36924159 36924452 -48771302 + AluSg SINE Alu 1 291 -19 189 74 0 0 chr15 36925578 36925605 -48770149 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr15 36925652 36925676 -48770078 + (TTC)n Simple_repeat Simple_repeat 2 25 0 873 103 0 24 chr15 36925680 36925806 -48769948 - FLAM_C SINE Alu -20 123 1 1323 111 13 60 chr15 36926210 36926445 -48769309 - AluJo SINE Alu -15 297 74 2295 70 0 3 chr15 36926454 36926753 -48769001 - AluY SINE Alu -13 298 1 466 164 0 0 chr15 36926756 36926829 -48768925 - AluJo SINE Alu -219 93 21 2424 44 3 3 chr15 36926954 36927252 -48768502 - AluY SINE Alu -13 298 1 22 70 0 0 chr15 36927363 36927406 -48768348 + AT_rich Low_complexity Low_complexity 1 43 0 1000 311 38 5 chr15 36927627 36928000 -48767754 + Tigger8 DNA MER2_type 14 398 -268 273 295 53 84 chr15 36928000 36928190 -48767564 - MIR SINE MIR 0 262 79 448 367 32 8 chr15 36928190 36928438 -48767316 + Tigger8 DNA MER2_type 404 657 -9 224 288 182 0 chr15 36928480 36928546 -48767208 + L2 LINE L2 3196 3273 -40 1552 137 88 11 chr15 36928679 36928963 -48766791 + AluJo SINE Alu 3 308 -4 1982 151 0 0 chr15 36929787 36930098 -48765656 + AluSx SINE Alu 1 311 -1 2045 128 0 0 chr15 36930107 36930403 -48765351 + AluSx SINE Alu 1 296 -16 746 243 14 0 chr15 36930499 36930697 -48765057 + FRAM SINE Alu 1 197 0 1489 169 39 26 chr15 36931008 36931316 -48764438 + AluJb SINE Alu 1 312 0 1990 113 0 3 chr15 36931830 36932138 -48763616 - AluSx SINE Alu 0 307 1 317 295 154 40 chr15 36932421 36932648 -48763106 + MIR SINE MIR 9 261 -1 2031 131 0 0 chr15 36932745 36933043 -48762711 - AluSx SINE Alu -14 298 1 2028 112 0 16 chr15 36933046 36933359 -48762395 - AluSq SINE Alu 0 313 6 1666 173 14 0 chr15 36933611 36933906 -48761848 - AluJo SINE Alu -13 299 1 934 307 117 5 chr15 36933908 36934403 -48761351 + L2 LINE L2 2669 3225 -88 1927 136 0 0 chr15 36934508 36934802 -48760952 + AluSx SINE Alu 1 294 -18 422 322 27 14 chr15 36935425 36935571 -48760183 - MIR SINE MIR -62 200 53 1049 240 50 0 chr15 36935646 36935904 -48759850 - L1ME1 LINE L1 -5 6161 5891 23 78 0 0 chr15 36936035 36936086 -48759668 + AT_rich Low_complexity Low_complexity 1 51 0 2389 77 0 3 chr15 36936432 36936744 -48759010 - AluY SINE Alu 0 311 1 888 142 8 0 chr15 36937562 36937696 -48758058 + AluSq/x SINE Alu 1 135 -178 1986 123 0 10 chr15 36937696 36938005 -48757749 + AluSg SINE Alu 1 306 -4 711 109 27 9 chr15 36938054 36938164 -48757590 + HY1 scRNA scRNA 1 112 0 35 0 0 0 chr15 36938164 36938199 -48757555 + AT_rich Low_complexity Low_complexity 1 35 0 215 274 177 18 chr15 36938856 36938969 -48756785 - MIR SINE MIR 0 262 132 1937 136 20 0 chr15 36939169 36939471 -48756283 + AluSq SINE Alu 1 308 -5 294 165 32 17 chr15 36939494 36939567 -48756187 - MIR SINE MIR -78 130 49 1862 134 6 54 chr15 36939885 36940199 -48755555 - AluSx SINE Alu -13 299 1 615 144 0 0 chr15 36940784 36940874 -48754880 + AluJ/FLAM SINE Alu 2 91 -221 281 274 0 78 chr15 36941519 36941621 -48754133 + MIR SINE MIR 30 123 -85 1363 192 59 39 chr15 36941804 36941920 -48753834 + AluJo SINE Alu 1 113 -199 394 88 29 0 chr15 36941920 36941988 -48753766 + (TA)n Simple_repeat Simple_repeat 2 71 0 1363 192 59 39 chr15 36941988 36942157 -48753597 + AluJo SINE Alu 113 292 -20 875 154 0 0 chr15 36942159 36942289 -48753465 + FLAM_C SINE Alu 1 130 -3 392 218 89 8 chr15 36942637 36942761 -48752993 + L1MC5 LINE L1 7723 7856 -105 582 228 130 91 chr15 36943590 36943998 -48751756 + MLT1H LTR MaLR 119 542 -7 36 0 0 21 chr15 36944475 36944501 -48751253 + AT_rich Low_complexity Low_complexity 1 27 -19 2276 112 0 0 chr15 36944501 36944797 -48750957 - AluSx SINE Alu -16 296 1 36 0 0 21 chr15 36944797 36944817 -48750937 + AT_rich Low_complexity Low_complexity 27 46 0 2464 72 0 7 chr15 36945633 36945937 -48749817 - AluY SINE Alu -9 302 1 248 297 178 0 chr15 36946224 36946337 -48749417 + MIR SINE MIR 21 152 -65 2109 100 3 10 chr15 36946448 36946738 -48749016 - AluSx SINE Alu -24 288 1 208 191 0 64 chr15 36947584 36947631 -48748123 + L2 LINE L2 3136 3179 -93 1600 189 48 3 chr15 36947755 36948068 -48747686 - L1MB7 LINE L1 -21 6163 5837 2052 132 7 10 chr15 36948190 36948500 -48747254 - AluSx SINE Alu -3 309 1 269 167 0 17 chr15 36948877 36948937 -48746817 + A-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr15 36950233 36950263 -48745491 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr15 36953217 36953244 -48742510 + AT_rich Low_complexity Low_complexity 1 27 0 404 260 40 110 chr15 36954473 36954673 -48741081 - MIR SINE MIR -27 235 50 584 134 168 17 chr15 36955035 36955154 -48740600 + FLAM_C SINE Alu 2 138 -5 1691 133 4 65 chr15 36956346 36956625 -48739129 + AluSx SINE Alu 33 294 -18 416 174 0 0 chr15 36956749 36956818 -48738936 - AluJ/FLAM SINE Alu -242 70 2 848 127 40 0 chr15 36956818 36956968 -48738786 - L1MA7 LINE L1 -47 6244 6089 844 254 42 5 chr15 36956986 36957199 -48738555 + MER58A DNA MER1_type 4 224 0 2123 94 24 17 chr15 36957224 36957512 -48738242 - AluSc SINE Alu -18 291 2 417 245 91 7 chr15 36957708 36957851 -48737903 + MIR SINE MIR 34 188 -74 189 0 0 0 chr15 36958347 36958368 -48737386 + (A)n Simple_repeat Simple_repeat 1 21 0 196 250 145 0 chr15 36959603 36959679 -48736075 + MIR SINE MIR 33 120 -88 2511 79 0 3 chr15 36959764 36960069 -48735685 + AluSc SINE Alu 1 304 -5 2416 83 3 13 chr15 36960128 36960442 -48735312 + AluY SINE Alu 1 311 0 1286 184 38 52 chr15 36961104 36961392 -48734362 - AluJb SINE Alu -6 306 23 2336 85 16 0 chr15 36962152 36962457 -48733297 + AluSg SINE Alu 1 310 0 1250 107 112 13 chr15 36962497 36962730 -48733024 - L1MA2 LINE L1 0 6304 6049 610 141 33 0 chr15 36962735 36962827 -48732927 - U6 snRNA snRNA -11 96 2 4985 129 32 36 chr15 36962829 36963921 -48731833 - L1MA3 LINE L1 -224 7500 6401 15388 110 35 7 chr15 36963921 36966227 -48729527 - L1MA3 LINE L1 -3896 3669 1299 667 193 0 22 chr15 36966795 36966930 -48728824 - AluJo SINE Alu -91 221 90 253 269 102 85 chr15 36967980 36968055 -48727699 + L1M4 LINE L1 4367 4439 -1707 1815 150 44 10 chr15 36968055 36968349 -48727405 + AluJb SINE Alu 1 304 -8 253 269 102 85 chr15 36968349 36968484 -48727270 + L1M4 LINE L1 4439 4570 -1576 1947 165 9 15 chr15 36968484 36968823 -48726931 + MER1B DNA MER1_type 1 337 0 253 269 102 85 chr15 36968823 36969284 -48726470 + L1M4 LINE L1 4570 5051 -1095 273 342 98 22 chr15 36970645 36971186 -48724568 - L2 LINE L2 -426 2888 2307 993 288 52 76 chr15 36971836 36972105 -48723649 + MLT1J LTR MaLR 1 275 -236 2258 123 0 3 chr15 36972105 36972415 -48723339 - AluSg SINE Alu -1 309 1 993 288 52 76 chr15 36972415 36972515 -48723239 + MLT1J LTR MaLR 275 376 -135 2155 145 3 0 chr15 36972515 36972826 -48722928 - AluSx SINE Alu 0 312 1 993 288 52 76 chr15 36972826 36972979 -48722775 + MLT1J LTR MaLR 376 511 0 715 119 0 18 chr15 36973944 36974053 -48721701 - AluSq/x SINE Alu -205 108 2 252 314 39 20 chr15 36974137 36974239 -48721515 + L2 LINE L2 3203 3306 -7 804 162 7 27 chr15 36974365 36974596 -48721158 + AluJb SINE Alu 167 394 0 369 224 0 0 chr15 36975142 36975209 -48720545 + AluJ/FLAM SINE Alu 1 67 -235 1159 176 19 9 chr15 36975596 36975806 -48719948 + AluJo SINE Alu 1 212 -100 2326 98 3 0 chr15 36976080 36976375 -48719379 - AluSx SINE Alu -16 296 1 2478 62 0 10 chr15 36978337 36978643 -48717111 - AluY SINE Alu -8 303 1 368 250 106 0 chr15 36978768 36978872 -48716882 - L2 LINE L2 0 3313 3199 223 352 94 28 chr15 36978934 36979147 -48716607 - L2 LINE L2 -523 2791 2565 383 205 238 8 chr15 36979804 36979926 -48715828 - MER5A DNA MER1_type -21 168 19 384 293 83 8 chr15 36979975 36980108 -48715646 + MIR SINE MIR 27 169 -93 1327 130 0 29 chr15 36980624 36980831 -48714923 + AluJo SINE Alu 112 312 0 2327 112 3 3 chr15 36980919 36981232 -48714522 + AluSp SINE Alu 1 313 0 21 0 0 0 chr15 36982675 36982696 -48713058 + AT_rich Low_complexity Low_complexity 1 21 0 1966 148 0 10 chr15 36983164 36983462 -48712292 - AluJb SINE Alu -16 296 2 1220 189 121 18 chr15 36984034 36984314 -48711440 - AluJb SINE Alu -3 309 1 1343 86 0 11 chr15 36984336 36984511 -48711243 - AluSq SINE Alu -1 312 140 753 187 0 0 chr15 36984611 36984745 -48711009 + AluSg/x SINE Alu 175 308 -2 451 287 0 0 chr15 36985285 36985414 -48710340 + MIR SINE MIR 123 251 -11 180 200 0 0 chr15 36985424 36985464 -48710290 + (CACCAT)n Simple_repeat Simple_repeat 4 43 0 536 306 25 10 chr15 36985464 36985663 -48710091 + MIR SINE MIR 58 259 -3 2360 89 10 0 chr15 36986142 36986446 -48709308 + AluSg SINE Alu 1 307 -3 303 28 0 0 chr15 36987074 36987110 -48708644 + (TG)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr15 36987588 36987615 -48708139 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2016 95 0 8 chr15 36987632 36987894 -48707860 - AluSq SINE Alu -53 260 1 1731 267 40 25 chr15 36988365 36988840 -48706914 + MER115 DNA AcHobo 181 662 -31 2220 124 0 7 chr15 36989172 36989479 -48706275 + AluSx SINE Alu 1 305 -7 523 118 18 73 chr15 36989528 36989638 -48706116 - U13 snRNA snRNA 0 104 1 789 138 0 0 chr15 36990292 36990408 -48705346 + FLAM_C SINE Alu 1 116 -17 2164 121 3 13 chr15 36990421 36990734 -48705020 - AluSx SINE Alu 0 312 3 330 87 0 0 chr15 36990876 36990922 -48704832 + (TG)n Simple_repeat Simple_repeat 2 47 0 2086 137 0 3 chr15 36991339 36991638 -48704116 + AluJo SINE Alu 1 298 -14 738 164 8 16 chr15 36991648 36991776 -48703978 + FLAM_A SINE Alu 1 127 -6 1628 99 132 12 chr15 36992147 36992390 -48703364 - AluSg SINE Alu -38 272 1 3333 140 29 24 chr15 36992429 36992980 -48702774 + MER41C LTR ERV1 1 554 0 1004 135 6 35 chr15 36993002 36993172 -48702582 - AluJo/FRAM SINE Alu -1 301 137 331 209 0 51 chr15 36993172 36993250 -48702504 - AluS SINE Alu -241 61 1 977 257 54 96 chr15 36993499 36993622 -48702132 - L1MC4a LINE L1 -1800 6008 5881 2261 107 3 0 chr15 36993622 36993920 -48701834 - AluSq SINE Alu -14 299 1 977 257 54 96 chr15 36993920 36994024 -48701730 - L1MC4a LINE L1 -1927 5881 5774 2057 131 10 0 chr15 36994024 36994315 -48701439 - AluSx SINE Alu -18 294 1 977 257 54 96 chr15 36994315 36994627 -48701127 - L1MC4a LINE L1 -2034 5774 5491 1986 146 0 13 chr15 36994684 36994999 -48700755 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr15 36995743 36995765 -48699989 + AT_rich Low_complexity Low_complexity 1 22 0 2317 104 0 3 chr15 36996154 36996453 -48699301 - AluSx SINE Alu -14 298 1 3150 68 22 0 chr15 36996990 36997399 -48698355 + L1PA7 LINE L1 5737 6154 0 1889 159 7 3 chr15 36997611 36997913 -48697841 - AluSq SINE Alu -10 303 1 1129 82 13 0 chr15 36999537 36999696 -48696058 - L1MA3 LINE L1 -11 6294 6134 1524 194 48 10 chr15 36999696 36999985 -48695769 - AluJo SINE Alu -8 304 5 1760 158 7 14 chr15 37000474 37000771 -48694983 + AluJo SINE Alu 15 309 -3 852 102 0 95 chr15 37001139 37001286 -48694468 + FLAM_C SINE Alu 1 133 0 327 198 19 85 chr15 37001770 37001876 -48693878 + MIR SINE MIR 85 183 -79 1014 154 130 67 chr15 37002781 37002932 -48692822 - MER58A DNA MER1_type -2199 221 52 1658 201 0 3 chr15 37002932 37003241 -48692513 + AluJo SINE Alu 1 308 -4 1014 154 130 67 chr15 37003241 37003297 -48692457 - MER58A DNA MER1_type -2368 52 1 349 241 90 15 chr15 37004623 37004756 -48690998 + MIR SINE MIR 60 202 -60 329 212 253 10 chr15 37004771 37004870 -48690884 + L2 LINE L2 3186 3308 -5 339 227 146 9 chr15 37005015 37005125 -48690629 + MIR SINE MIR 48 172 -90 348 284 36 62 chr15 37006138 37006363 -48689391 + L2 LINE L2 2461 2679 -635 1518 180 64 24 chr15 37006387 37006682 -48689072 + AluJo SINE Alu 1 307 -5 2090 103 3 21 chr15 37007475 37007766 -48687988 - AluSc SINE Alu -23 286 1 2233 110 0 7 chr15 37008669 37008978 -48686776 + AluSc SINE Alu 1 307 -2 2209 106 3 13 chr15 37010329 37010632 -48685122 - AluY SINE Alu -11 300 1 2402 77 0 26 chr15 37010813 37011124 -48684630 - AluY SINE Alu -8 303 1 417 229 28 0 chr15 37011129 37011238 -48684516 - MER104 DNA Tc2 -40 140 29 849 67 75 0 chr15 37011677 37011797 -48683957 - L1PA16 LINE L1 -15 6151 6023 1966 142 3 16 chr15 37011797 37012113 -48683641 - AluSx SINE Alu 0 312 1 795 152 213 0 chr15 37012115 37012279 -48683475 - AluJb SINE Alu -7 305 107 5194 171 12 25 chr15 37012279 37014073 -48681681 - L1PA16 LINE L1 -130 6036 4271 2048 146 7 0 chr15 37014073 37014382 -48681372 - AluSp SINE Alu -2 311 1 5194 171 12 25 chr15 37014382 37014529 -48681225 - L1PA16 LINE L1 -1895 4271 4124 26 0 0 0 chr15 37014581 37014607 -48681147 + AT_rich Low_complexity Low_complexity 1 26 0 2190 133 0 0 chr15 37014673 37014975 -48680779 - AluSx SINE Alu -10 302 1 834 216 88 5 chr15 37015111 37015315 -48680439 + MIR SINE MIR 35 255 -7 585 223 50 59 chr15 37015986 37016188 -48679566 + MIR SINE MIR 28 227 -35 434 312 39 13 chr15 37016724 37016878 -48678876 + L2 LINE L2 3115 3272 0 21 0 0 0 chr15 37018188 37018209 -48677545 + AT_rich Low_complexity Low_complexity 1 21 0 526 221 63 0 chr15 37018285 37018436 -48677318 - MIR SINE MIR -48 214 55 1274 60 18 0 chr15 37018442 37018608 -48677146 - L1PA10 LINE L1 0 6168 6000 787 216 74 61 chr15 37018907 37019138 -48676616 + Charlie8 DNA MER1_type 1 234 -2183 1089 218 14 0 chr15 37019172 37019388 -48676366 - MER20 DNA MER1_type 0 219 1 186 205 84 60 chr15 37019767 37019850 -48675904 - MIR SINE MIR -129 133 49 596 144 0 64 chr15 37020840 37020965 -48674789 - MER5A DNA MER1_type 0 189 73 1390 121 103 9 chr15 37020966 37021080 -48674674 - AluY SINE Alu -57 254 152 228 35 0 0 chr15 37021080 37021109 -48674645 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1390 121 103 9 chr15 37021109 37021226 -48674528 - AluY SINE Alu -159 152 1 381 181 0 0 chr15 37021227 37021299 -48674455 - MER5A DNA MER1_type -114 75 4 747 140 52 15 chr15 37021321 37021457 -48674297 + FRAM SINE Alu 19 159 -17 1662 159 67 85 chr15 37021896 37022298 -48673456 - MSTD LTR MaLR 0 396 2 1642 125 42 0 chr15 37022461 37022701 -48673053 + MER1B DNA MER1_type 1 250 -89 898 170 0 0 chr15 37022830 37022977 -48672777 - AluSg/x SINE Alu 0 312 166 1163 172 5 15 chr15 37022977 37023175 -48672579 - AluJb SINE Alu -32 280 85 2051 136 27 0 chr15 37025230 37025531 -48670223 + AluSx SINE Alu 2 310 -2 291 93 0 0 chr15 37026055 37026098 -48669656 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 147 0 0 chr15 37026933 37026967 -48668787 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1215 236 149 8 chr15 37028194 37028522 -48667232 + L1MC4 LINE L1 7240 7521 -521 1629 168 4 7 chr15 37028522 37028796 -48666958 + AluJb SINE Alu 16 288 -24 1215 236 149 8 chr15 37028796 37028812 -48666942 + L1MC4 LINE L1 7521 7533 -509 1896 126 23 40 chr15 37028812 37029113 -48666641 + AluSx SINE Alu 1 296 -16 1215 236 149 8 chr15 37029113 37029237 -48666517 + L1MC4 LINE L1 7533 7775 -267 2408 69 0 41 chr15 37029237 37029556 -48666198 + AluY SINE Alu 1 306 -5 234 351 166 7 chr15 37031246 37031542 -48664212 - L2 LINE L2 -5 3267 2925 2041 157 3 0 chr15 37032322 37032628 -48663126 - AluJb SINE Alu -5 307 1 1918 94 0 0 chr15 37032819 37033063 -48662691 - AluSx SINE Alu -6 306 63 382 257 10 0 chr15 37033063 37033164 -48662590 + MIR SINE MIR 147 248 -14 240 184 0 0 chr15 37034653 37034702 -48661052 + T-rich Low_complexity Low_complexity 1 49 0 1098 90 0 0 chr15 37034702 37034835 -48660919 - AluSq/x SINE Alu -179 133 1 29 0 0 0 chr15 37034859 37034888 -48660866 + AT_rich Low_complexity Low_complexity 1 29 0 324 316 36 22 chr15 37036248 37036387 -48659367 + MIR SINE MIR 111 251 -11 459 287 72 11 chr15 37036855 37037036 -48658718 + Charlie7 DNA MER1_type 2 193 -2419 532 233 40 74 chr15 37037182 37037384 -48658370 + MIR3 SINE MIR 7 201 -7 2088 142 0 3 chr15 37037912 37038215 -48657539 + AluJo SINE Alu 1 302 -10 2940 188 83 5 chr15 37038215 37038805 -48656949 - MER6 DNA MER2_type -228 637 2 289 71 143 0 chr15 37040525 37040567 -48655187 + MADE1 DNA Mariner 31 78 -2 28 102 0 0 chr15 37040632 37040730 -48655024 + AT_rich Low_complexity Low_complexity 1 98 0 1681 114 67 37 chr15 37040740 37041038 -48654716 + AluSx SINE Alu 1 307 -5 444 250 67 0 chr15 37041038 37041142 -48654612 - AluJo/FLAM SINE Alu -196 116 6 1710 148 0 75 chr15 37041614 37041945 -48653809 + AluJo SINE Alu 1 306 -6 244 320 186 35 chr15 37042355 37042527 -48653227 + MIR SINE MIR 64 261 -1 666 186 290 0 chr15 37042578 37042761 -48652993 + MIR SINE MIR 2 237 -25 348 241 11 35 chr15 37042795 37042882 -48652872 - L2 LINE L2 -1 3271 3187 218 286 71 0 chr15 37043384 37043468 -48652286 + CT-rich Low_complexity Low_complexity 4 93 0 1868 216 69 30 chr15 37093470 37093961 -48601793 - L1MC4 LINE L1 -753 7289 6780 252 0 0 0 chr15 37094232 37094260 -48601494 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 923 185 0 0 chr15 37094263 37094414 -48601340 - FRAM SINE Alu -30 146 1 214 216 34 23 chr15 37094414 37094445 -48601309 + T-rich Low_complexity Low_complexity 3 32 -59 1901 138 3 46 chr15 37094445 37094771 -48600983 - AluSx SINE Alu 0 312 1 214 216 34 23 chr15 37094771 37094827 -48600927 + T-rich Low_complexity Low_complexity 32 91 0 413 179 217 9 chr15 37094831 37094937 -48600817 - FLAM_C SINE Alu -6 137 10 312 354 61 6 chr15 37095885 37096049 -48599705 - MER5B DNA MER1_type -5 173 1 522 251 97 11 chr15 37096917 37097092 -48598662 - MIR SINE MIR -14 248 59 254 378 26 7 chr15 37098214 37098365 -48597389 + MIR SINE MIR 35 188 -74 187 266 9 83 chr15 37098930 37099039 -48596715 + L2 LINE L2 2439 2539 -775 22 35 0 0 chr15 37099046 37099075 -48596679 + AT_rich Low_complexity Low_complexity 1 29 0 2175 93 47 17 chr15 37099664 37099964 -48595790 - AluSx SINE Alu -3 309 1 1341 182 0 0 chr15 37100554 37100774 -48594980 + AluJb SINE Alu 81 300 -12 229 307 13 13 chr15 37100954 37101029 -48594725 + MIR SINE MIR 20 94 -168 28 17 0 69 chr15 37101276 37101334 -48594420 + AT_rich Low_complexity Low_complexity 1 54 0 2241 101 7 0 chr15 37101589 37101875 -48593879 - AluSq SINE Alu -24 289 2 2158 125 3 0 chr15 37101929 37102217 -48593537 + AluSx SINE Alu 1 289 -23 253 262 93 33 chr15 37103694 37103877 -48591877 - L1ME4a LINE L1 -194 5927 5734 213 65 0 0 chr15 37104019 37104050 -48591704 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 495 33 0 0 chr15 37104366 37104427 -48591327 + (TG)n Simple_repeat Simple_repeat 2 62 0 2258 64 0 14 chr15 37104432 37104713 -48591041 - AluSx SINE Alu -10 302 26 1926 271 51 19 chr15 37104736 37105422 -48590332 + L1MC4a LINE L1 5257 5964 -1844 1923 157 0 10 chr15 37105955 37106260 -48589494 - AluJb SINE Alu -10 302 1 657 66 0 0 chr15 37106494 37106585 -48589169 + (TCCA)n Simple_repeat Simple_repeat 3 93 0 939 166 70 9 chr15 37106720 37106949 -48588805 - Charlie5 DNA MER1_type 0 2624 2382 2588 63 0 0 chr15 37107112 37107414 -48588340 - AluSc SINE Alu -7 302 1 207 100 0 0 chr15 37107518 37107548 -48588206 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 476 219 185 0 chr15 37108365 37108516 -48587238 + MER5A DNA MER1_type 9 187 -2 324 111 0 0 chr15 37110528 37110582 -48585172 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr15 37110838 37110881 -48584873 + AT_rich Low_complexity Low_complexity 1 43 0 472 234 90 24 chr15 37111404 37111571 -48584183 - MER5B DNA MER1_type 0 178 1 40 49 0 0 chr15 37112246 37112307 -48583447 + AT_rich Low_complexity Low_complexity 1 61 0 1923 106 53 3 chr15 37112313 37112597 -48583157 - AluSx SINE Alu -14 298 1 2082 150 0 0 chr15 37113962 37114269 -48581485 - AluJb SINE Alu -5 307 1 204 135 0 27 chr15 37114418 37114455 -48581299 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2559 71 0 0 chr15 37114848 37115157 -48580597 + AluY SINE Alu 1 309 -2 1589 104 5 14 chr15 37119484 37119696 -48576058 + AluSx SINE Alu 1 210 -102 279 130 29 14 chr15 37119735 37119804 -48575950 + (TA)n Simple_repeat Simple_repeat 1 70 0 543 207 9 0 chr15 37119869 37119985 -48575769 - FLAM_C SINE Alu -26 117 1 403 257 82 55 chr15 37119986 37120169 -48575585 - L1MC/D LINE L1 -1989 5819 5632 2212 129 0 0 chr15 37120317 37120626 -48575128 - AluSx SINE Alu -3 309 1 1033 132 7 0 chr15 37120818 37121029 -48574725 - ALR/Alpha Satellite centromeric 0 212 1 2142 130 0 7 chr15 37122966 37123274 -48572480 + AluJb SINE Alu 1 306 -6 2265 229 111 0 chr15 37123547 37124044 -48571710 - MLT1F1 LTR MaLR -13 554 3 330 26 0 0 chr15 37124069 37124108 -48571646 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr15 37124126 37124150 -48571604 + (CA)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr15 37124170 37124199 -48571555 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 209 119 24 0 chr15 37124223 37124265 -48571489 + (TA)n Simple_repeat Simple_repeat 2 44 0 600 268 23 35 chr15 37124344 37124584 -48571170 - MIR SINE MIR 0 262 21 325 278 24 24 chr15 37124832 37124958 -48570796 - MIR3 SINE MIR -53 155 30 374 318 117 31 chr15 37125310 37125533 -48570221 + MIR SINE MIR 10 251 -11 1722 164 25 7 chr15 37127033 37127319 -48568435 + AluJo SINE Alu 1 291 -21 2344 84 0 0 chr15 37127323 37127657 -48568097 + AluSx SINE Alu 1 334 0 954 221 74 135 chr15 37127709 37128006 -48567748 - MLT1C LTR MaLR -9 458 201 928 160 0 0 chr15 37128006 37128150 -48567604 + U4 snRNA snRNA 1 144 -1 954 221 74 135 chr15 37128150 37128340 -48567414 - MLT1C LTR MaLR -266 201 1 202 324 7 81 chr15 37128507 37128643 -48567111 + L2 LINE L2 2566 2691 -623 * 519 311 5 24 chr15 37128630 37128836 -48566918 - L2 LINE L2 -429 2885 2684 915 265 36 23 chr15 37128963 37129269 -48566485 - L2 LINE L2 -995 2319 2010 2289 108 0 0 chr15 37129340 37129637 -48566117 - AluSg SINE Alu -13 297 1 1963 114 0 109 chr15 37130389 37130739 -48565015 + AluJb SINE Alu 1 312 0 967 182 6 11 chr15 37134750 37134926 -48560828 + FAM SINE Alu 1 175 0 22 0 0 0 chr15 37135987 37136009 -48559745 + AT_rich Low_complexity Low_complexity 1 22 0 230 331 118 8 chr15 37136237 37136364 -48559390 - L2 LINE L2 0 3313 3173 2311 92 14 0 chr15 37136403 37136696 -48559058 + AluSc SINE Alu 1 297 -12 598 197 0 73 chr15 37136801 37136938 -48558816 + MER20 DNA MER1_type 93 219 0 1826 166 0 13 chr15 37137031 37137333 -48558421 + AluJb SINE Alu 1 298 -14 2464 80 3 0 chr15 37138373 37138675 -48557079 + AluSp SINE Alu 1 303 -10 1591 162 56 7 chr15 37138683 37138967 -48556787 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr15 37139050 37139072 -48556682 + AT_rich Low_complexity Low_complexity 1 22 0 371 228 44 132 chr15 37139107 37139357 -48556397 + MIR SINE MIR 13 240 -22 762 178 31 0 chr15 37139441 37139570 -48556184 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr15 37140369 37140398 -48555356 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr15 37140445 37140493 -48555261 + AT_rich Low_complexity Low_complexity 1 48 0 841 124 108 0 chr15 37140549 37140678 -48555076 - MER46A DNA MER2_type -90 146 4 870 151 91 82 chr15 37140551 37140694 -48555060 + MER46A DNA MER2_type 1 148 -2583 1855 111 50 4 chr15 37140694 37140973 -48554781 + AluSx SINE Alu 1 292 -20 870 151 91 82 chr15 37140973 37141061 -48554693 + MER46A DNA MER2_type 148 234 -2 1881 128 6 28 chr15 37141230 37141549 -48554205 - AluSx SINE Alu 0 312 1 381 322 66 0 chr15 37141592 37141713 -48554041 - MIR3 SINE MIR -39 169 41 1576 188 3 17 chr15 37141917 37142215 -48553539 + AluJb SINE Alu 1 294 -18 651 296 20 20 chr15 37142391 37142594 -48553160 + MIR SINE MIR 2 204 -58 2279 95 0 0 chr15 37142789 37143095 -48552659 + AluSx SINE Alu 1 306 -6 1920 129 7 3 chr15 37145892 37146186 -48549568 - AluSg SINE Alu -15 295 1 579 340 128 11 chr15 37146222 37146604 -48549150 - L3 LINE CR1 -57 1520 1094 466 188 0 0 chr15 37146676 37146756 -48548998 + FRAM SINE Alu 62 141 -35 884 204 16 0 chr15 37146807 37146993 -48548761 - MER5A DNA MER1_type 0 189 1 245 289 198 0 chr15 37147010 37147131 -48548623 + MIR3 SINE MIR 45 189 -19 267 241 0 0 chr15 37147197 37147255 -48548499 + (CA)n Simple_repeat Simple_repeat 1 58 0 375 73 0 0 chr15 37148706 37148761 -48546993 + (TC)n Simple_repeat Simple_repeat 2 56 0 942 83 0 0 chr15 37148785 37148906 -48546848 - AluSg SINE Alu -189 121 1 253 171 255 25 chr15 37149364 37149493 -48546261 - MIR SINE MIR -40 168 8 1576 133 4 11 chr15 37150246 37150509 -48545245 + AluSx SINE Alu 45 305 -7 403 167 0 0 chr15 37150513 37150585 -48545169 + Alu SINE Alu 240 311 -1 373 167 0 0 chr15 37150598 37150658 -48545096 + Alu SINE Alu 239 298 -3 257 164 0 18 chr15 37150659 37150714 -48545040 + GA-rich Low_complexity Low_complexity 1 54 0 1586 185 14 3 chr15 37150721 37151008 -48544746 + AluJb SINE Alu 2 291 -21 206 0 69 0 chr15 37151347 37151376 -48544378 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2155 101 0 0 chr15 37151378 37151665 -48544089 - AluSx SINE Alu -25 287 1 4217 173 51 15 chr15 37151984 37152859 -48542895 - L1MB8 LINE L1 0 6178 5272 1260 192 72 7 chr15 37153314 37153590 -48542164 - AluJo SINE Alu -13 299 6 1030 198 10 10 chr15 37154114 37154311 -48541443 - MER20 DNA MER1_type -1 218 22 801 172 0 21 chr15 37154339 37154484 -48541270 - FLAM_C SINE Alu 0 143 2 2112 110 3 0 chr15 37154512 37154803 -48540951 + AluSx SINE Alu 1 292 -20 6517 116 11 47 chr15 37154803 37155418 -48540336 + L1MA2 LINE L1 5162 5798 -506 1794 167 0 13 chr15 37155418 37155717 -48540037 + AluSx SINE Alu 1 295 -17 6517 116 11 47 chr15 37155717 37155772 -48539982 + L1MA2 LINE L1 5798 5853 -451 1947 134 7 0 chr15 37155772 37156062 -48539692 + AluSx SINE Alu 1 292 -20 6517 116 11 47 chr15 37156062 37156559 -48539195 + L1MA2 LINE L1 5853 6293 -11 639 184 0 71 chr15 37156581 37156722 -48539032 + FLAM_C SINE Alu 3 133 0 2327 109 28 0 chr15 37156924 37157245 -48538509 + MER1B DNA MER1_type 1 330 -9 2080 120 0 3 chr15 37157565 37157873 -48537881 + AluSq SINE Alu 1 307 -6 229 286 52 0 chr15 37159100 37159177 -48536577 - L2 LINE L2 -292 2980 2900 481 267 119 17 chr15 37160401 37160577 -48535177 + MIR SINE MIR 50 243 -19 697 330 86 23 chr15 37160592 37161070 -48534684 - L2 LINE L2 -16 3297 2791 200 293 42 89 chr15 37161151 37161342 -48534412 - L2 LINE L2 -1332 1982 1801 206 323 92 73 chr15 37161754 37162057 -48533697 + L2 LINE L2 2990 3298 -15 1688 169 16 13 chr15 37163328 37163635 -48532119 + AluJo SINE Alu 1 308 -4 2121 68 4 7 chr15 37163727 37164007 -48531747 + AluY SINE Alu 3 281 -30 180 0 0 0 chr15 37164011 37164031 -48531723 + (CAA)n Simple_repeat Simple_repeat 2 21 0 269 339 51 17 chr15 37164959 37165077 -48530677 + MIR SINE MIR 121 242 -20 658 237 109 63 chr15 37166433 37166893 -48528861 - L1ME4a LINE L1 -28 6093 5613 232 206 44 15 chr15 37167483 37167551 -48528203 - MER116 DNA Mariner -10 70 1 2285 80 0 0 chr15 37167720 37168009 -48527745 - AluSx SINE Alu -23 289 1 1839 125 7 4 chr15 37169891 37170203 -48525551 - AluSx SINE Alu 0 313 1 311 168 40 48 chr15 37171020 37171145 -48524609 + L1MC5 LINE L1 7613 7736 -225 1588 165 0 4 chr15 37171159 37171419 -48524335 + AluJo SINE Alu 1 259 -53 1806 147 7 0 chr15 37171523 37171816 -48523938 - AluJb SINE Alu -17 295 1 2144 111 0 7 chr15 37172102 37172408 -48523346 + AluSx SINE Alu 1 304 -8 363 258 75 0 chr15 37173338 37173458 -48522296 + L1ME4a LINE L1 5991 6119 -2 1364 227 7 28 chr15 37174940 37175231 -48520523 - MLT1A1 LTR MaLR -42 323 39 2137 112 3 6 chr15 37177406 37177718 -48518036 - AluSx SINE Alu -1 311 1 800 217 13 44 chr15 37177813 37178039 -48517715 + AluJo SINE Alu 79 297 -15 206 229 42 0 chr15 37178039 37178087 -48517667 + MIR SINE MIR 99 148 -114 1731 144 0 63 chr15 37179360 37179693 -48516061 + AluJb SINE Alu 1 312 0 417 39 0 0 chr15 37179696 37179747 -48516007 + (CA)n Simple_repeat Simple_repeat 1 51 0 1959 97 36 4 chr15 37179944 37180223 -48515531 + AluSp SINE Alu 1 288 -25 296 233 60 60 chr15 37180586 37180719 -48515035 - LTR33 LTR ERVL -345 176 44 791 211 270 12 chr15 37182192 37182676 -48513078 - Tigger7 DNA MER2_type 0 2487 8 1584 178 17 10 chr15 37182841 37183139 -48512615 - AluJo SINE Alu -12 300 1 1276 158 95 55 chr15 37183451 37183595 -48512159 + AluJo SINE Alu 1 138 -174 1991 130 0 0 chr15 37183595 37183914 -48511840 + AluSx SINE Alu 1 319 0 1276 158 95 55 chr15 37183914 37184041 -48511713 + AluJo SINE Alu 138 284 -28 832 220 0 0 chr15 37184042 37184192 -48511562 + AluSg/x SINE Alu 131 280 -30 255 329 0 0 chr15 37184534 37184607 -48511147 + MIR3 SINE MIR 88 160 -48 1117 210 81 35 chr15 37184616 37184926 -48510828 - MER5C DNA MER1_type 0 324 1 271 293 60 15 chr15 37185282 37185415 -48510339 - MIR3 SINE MIR -19 189 51 182 204 0 61 chr15 37185960 37186009 -48509745 - L2 LINE L2 -4 3268 3223 349 93 19 0 chr15 37186033 37186087 -48509667 + L1MA9 LINE L1 6250 6304 -8 228 196 43 0 chr15 37186154 37186200 -48509554 - MIR SINE MIR -122 140 93 504 315 92 56 chr15 37186972 37187277 -48508477 + L3 LINE CR1 1177 1492 -85 274 376 47 20 chr15 37187319 37187468 -48508286 + MIR SINE MIR 81 233 -29 210 195 24 0 chr15 37187548 37187589 -48508165 + MIR3 SINE MIR 145 186 -22 2076 99 10 14 chr15 37187843 37187999 -48507755 - AluSx SINE Alu -20 292 136 1955 101 21 3 chr15 37187999 37188162 -48507592 - AluSc SINE Alu -17 292 120 243 0 0 0 chr15 37188162 37188189 -48507565 + (TG)n Simple_repeat Simple_repeat 2 28 0 1955 101 21 3 chr15 37188189 37188312 -48507442 - AluSc SINE Alu -189 120 1 2076 99 10 14 chr15 37188312 37188448 -48507306 - AluSx SINE Alu -176 136 1 1946 114 0 17 chr15 37188636 37188934 -48506820 - AluSc SINE Alu -16 293 1 348 83 0 0 chr15 37189014 37189062 -48506692 + (TG)n Simple_repeat Simple_repeat 2 49 0 879 164 146 0 chr15 37189161 37189326 -48506428 - MER5A DNA MER1_type 0 189 1 2559 77 0 0 chr15 37190717 37191028 -48504726 + AluY SINE Alu 1 311 0 296 248 8 112 chr15 37191852 37191977 -48503777 + MIR SINE MIR 81 192 -70 2138 109 26 26 chr15 37192443 37192755 -48502999 - AluSx SINE Alu 0 312 1 193 129 71 0 chr15 37193308 37193378 -48502376 + (TA)n Simple_repeat Simple_repeat 1 75 0 1832 154 7 0 chr15 37193458 37193761 -48501993 + AluSx SINE Alu 1 305 0 775 238 6 0 chr15 37193898 37194058 -48501696 + FRAM SINE Alu 9 169 -7 1738 203 78 5 chr15 37194148 37194381 -48501373 + MER63B DNA MER1_type 3 278 -784 1715 78 9 22 chr15 37194381 37194613 -48501141 + AluSx SINE Alu 1 229 -83 1738 203 78 5 chr15 37194613 37194778 -48500976 + MER63B DNA MER1_type 278 430 -6 2389 91 3 0 chr15 37194928 37195225 -48500529 + AluSp SINE Alu 1 298 -15 916 127 0 0 chr15 37195478 37195604 -48500150 + AluJo/FLAM SINE Alu 3 128 -174 2321 100 0 0 chr15 37195604 37195903 -48499851 + AluSx SINE Alu 1 299 -13 224 294 0 15 chr15 37196379 37196447 -48499307 + MIR SINE MIR 161 227 -35 492 169 0 0 chr15 37197030 37197113 -48498641 - MER49 LTR ERV1 -659 264 182 661 200 12 55 chr15 37197115 37197280 -48498474 - L1M4 LINE L1 -1966 4180 4023 1889 128 22 95 chr15 37197828 37197951 -48497803 - MER2 DNA MER2_type 0 344 214 2395 63 0 23 chr15 37197951 37198252 -48497502 - AluY SINE Alu -17 294 1 2263 116 3 0 chr15 37198252 37198554 -48497200 - AluSx SINE Alu -9 303 1 1889 128 22 95 chr15 37198554 37198797 -48496957 - MER2 DNA MER2_type -128 216 4 619 180 81 75 chr15 37199866 37199978 -48495776 + MER20 DNA MER1_type 54 169 -50 195 42 0 0 chr15 37199978 37200002 -48495752 + (CA)n Simple_repeat Simple_repeat 1 24 0 619 180 81 75 chr15 37200002 37200050 -48495704 + MER20 DNA MER1_type 169 215 -4 377 277 26 45 chr15 37200973 37201128 -48494626 + L1ME3A LINE L1 5699 5850 -320 317 344 65 45 chr15 37202040 37202348 -48493406 - MLT1K LTR MaLR -172 416 103 1964 140 17 90 chr15 37203724 37204145 -48491609 + MLT1B LTR MaLR 1 390 0 586 167 0 0 chr15 37205569 37205659 -48490095 - AluJ/FLAM SINE Alu -221 91 2 288 244 109 25 chr15 37205869 37205988 -48489766 - MLT1J LTR MaLR -269 242 114 1630 183 32 0 chr15 37206686 37206965 -48488789 - AluJo SINE Alu -20 292 5 279 312 109 22 chr15 37207223 37207361 -48488393 - MIR SINE MIR -3 259 110 1699 138 7 27 chr15 37208273 37208674 -48487080 - L1P3 LINE L1 -5830 631 67 32274 97 12 31 chr15 37208674 37214516 -48481238 + L1PA7 LINE L1 430 6153 -1 1865 179 13 0 chr15 37217232 37217540 -48478214 + AluJo SINE Alu 1 312 0 2113 78 92 0 chr15 37217543 37217824 -48477930 + AluSx SINE Alu 1 307 -5 1631 164 7 46 chr15 37217935 37218104 -48477650 - AluJo SINE Alu -19 293 140 2360 122 0 0 chr15 37218104 37218416 -48477338 - AluSx SINE Alu 0 312 1 1631 164 7 46 chr15 37218416 37218551 -48477203 - AluJo SINE Alu -172 140 1 472 327 57 8 chr15 37218744 37218992 -48476762 - L1MC4 LINE L1 -2 8040 7781 1201 269 118 12 chr15 37219022 37219590 -48476164 - L1MC4 LINE L1 -478 7564 6937 654 151 28 0 chr15 37219614 37219720 -48476034 - FRAM SINE Alu -68 108 1 1062 268 104 46 chr15 37219720 37220058 -48475696 - L1MC4 LINE L1 -944 6949 6632 1774 159 7 7 chr15 37220058 37220348 -48475406 + AluJo SINE Alu 1 290 -22 1062 268 104 46 chr15 37220348 37220584 -48475170 - L1MC4 LINE L1 -1261 6632 6411 1512 140 4 4 chr15 37220584 37220812 -48474942 - AluJo SINE Alu -8 304 77 1062 268 104 46 chr15 37220812 37221147 -48474607 - L1MC4 LINE L1 -1482 6411 5879 2287 206 105 18 chr15 37221147 37221357 -48474397 + REP3 LTR ERV 3 193 -369 1909 147 23 3 chr15 37221357 37221657 -48474097 - AluSx SINE Alu -6 306 1 2287 206 105 18 chr15 37221657 37221961 -48473793 + REP3 LTR ERV 193 562 0 1062 268 104 46 chr15 37221961 37222045 -48473709 - L1MC4 LINE L1 -2014 5879 5801 550 206 0 53 chr15 37222115 37222246 -48473508 - FLAM_A SINE Alu -6 127 4 1836 167 10 10 chr15 37222296 37222595 -48473159 + AluJb SINE Alu 1 299 -13 237 267 95 0 chr15 37223540 37223645 -48472109 - MIR SINE MIR -17 245 131 1900 164 0 13 chr15 37224037 37224341 -48471413 + AluJb SINE Alu 5 304 -8 233 291 13 0 chr15 37224744 37224823 -48470931 - MIR3 SINE MIR -17 191 112 494 281 79 14 chr15 37225794 37226048 -48469706 + L2 LINE L2 2723 3057 -215 1693 138 90 14 chr15 37226063 37226352 -48469402 + AluSx SINE Alu 1 311 -1 382 288 27 38 chr15 37226507 37226691 -48469063 + L2 LINE L2 3113 3294 -19 26 50 0 0 chr15 37226923 37226963 -48468791 + AT_rich Low_complexity Low_complexity 1 40 0 2474 65 0 0 chr15 37227020 37227312 -48468442 - AluY SINE Alu -19 292 1 22 56 0 0 chr15 37227376 37227412 -48468342 + AT_rich Low_complexity Low_complexity 1 36 0 2327 96 0 7 chr15 37227420 37227713 -48468041 + AluSg SINE Alu 1 291 -19 1902 173 13 0 chr15 37227913 37228220 -48467534 + AluJo SINE Alu 1 311 -1 656 164 0 0 chr15 37228736 37228840 -48466914 + FLAM_C SINE Alu 6 109 -34 183 256 77 13 chr15 37229082 37229160 -48466594 + L2 LINE L2 3138 3220 -52 2365 68 10 10 chr15 37230050 37230361 -48465393 - AluY SINE Alu 0 311 1 485 223 51 13 chr15 37230446 37230603 -48465151 - L1ME4a LINE L1 -177 5944 5782 1717 108 100 0 chr15 37230745 37230996 -48464758 + AluSx SINE Alu 7 282 -30 248 217 17 0 chr15 37231618 37231678 -48464076 + L2 LINE L2 2584 2644 -670 914 207 0 0 chr15 37232049 37232213 -48463541 - FRAM SINE Alu -13 163 1 307 273 0 26 chr15 37235477 37235554 -48460200 + L2 LINE L2 3192 3266 -6 5319 129 46 17 chr15 37235563 37235951 -48459803 + L1PB3 LINE L1 5081 5456 -698 1739 119 6 104 chr15 37235951 37236286 -48459468 + AluJo SINE Alu 1 302 -10 5319 129 46 17 chr15 37236286 37236937 -48458817 + L1PB3 LINE L1 5456 6151 -3 216 267 0 35 chr15 37237090 37237176 -48458578 + GA-rich Low_complexity Low_complexity 2 84 0 2268 116 0 0 chr15 37237223 37237524 -48458230 + AluSx SINE Alu 1 301 -11 1264 171 9 5 chr15 37237916 37238133 -48457621 - AluJo SINE Alu -10 302 85 1655 173 14 0 chr15 37238198 37238481 -48457273 - AluJo SINE Alu -7 305 19 1662 141 85 4 chr15 37238550 37238820 -48456934 - AluJb SINE Alu -20 292 1 1824 87 87 47 chr15 37238858 37239135 -48456619 + AluY SINE Alu 1 288 -23 180 0 0 0 chr15 37239350 37239370 -48456384 + (T)n Simple_repeat Simple_repeat 1 20 0 817 277 80 54 chr15 37239370 37239835 -48455919 + MLT1H LTR MaLR 73 549 0 1497 88 0 10 chr15 37240168 37240362 -48455392 + AluSq SINE Alu 60 251 -62 1617 244 20 10 chr15 37240436 37240829 -48454925 + MLT1F1 LTR MaLR 5 400 -167 189 0 0 0 chr15 37240863 37240884 -48454870 + (A)n Simple_repeat Simple_repeat 1 21 0 2199 121 16 0 chr15 37240888 37241195 -48454559 + AluSx SINE Alu 1 312 0 590 193 67 67 chr15 37241197 37241347 -48454407 + MLT1F1 LTR MaLR 386 535 -32 1907 112 45 25 chr15 37241402 37241688 -48454066 - AluSx SINE Alu -16 296 5 899 167 0 0 chr15 37241806 37241968 -48453786 + AluSg/x SINE Alu 144 305 0 2206 83 0 4 chr15 37242175 37242452 -48453302 - AluY SINE Alu -21 290 15 848 180 41 6 chr15 37246552 37246724 -48449030 + AluJb SINE Alu 135 312 0 1633 179 3 27 chr15 37247052 37247349 -48448405 - AluJo SINE Alu -20 292 3 180 0 0 0 chr15 37247605 37247625 -48448129 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1892 144 72 22 chr15 37248031 37248351 -48447403 + MER1B DNA MER1_type 2 337 0 264 304 9 26 chr15 37248453 37248568 -48447186 + L1MB7 LINE L1 5741 5853 -1955 725 110 0 0 chr15 37249187 37249287 -48446467 - AluJ/FLAM SINE Alu -212 100 1 2117 115 3 0 chr15 37249533 37249820 -48445934 + AluSx SINE Alu 1 288 -24 282 29 0 0 chr15 37249827 37249862 -48445892 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2639 181 133 9 chr15 37250851 37251424 -48444330 - MER82 DNA MER2_type 0 653 10 1316 134 49 49 chr15 37252245 37252491 -48443263 + Tigger2a DNA MER2_type 1 246 -188 2251 116 0 0 chr15 37252808 37253111 -48442643 + AluSx SINE Alu 1 303 -9 2150 130 0 13 chr15 37253528 37253843 -48441911 + AluSx SINE Alu 1 311 -1 647 140 9 18 chr15 37253993 37254107 -48441647 + MLT1B LTR MaLR 1 113 -277 661 150 23 2 chr15 37254212 37254335 -48441419 - L1MB2 LINE L1 -209 5961 5830 216 0 0 0 chr15 37254352 37254376 -48441378 + (T)n Simple_repeat Simple_repeat 1 24 0 2325 93 20 0 chr15 37254727 37255029 -48440725 - AluSg SINE Alu -2 308 1 1301 128 0 0 chr15 37255042 37255230 -48440524 - AluSg/x SINE Alu 0 310 123 239 140 53 0 chr15 37255421 37255478 -48440276 + L1MB7 LINE L1 6125 6184 0 1075 235 6 35 chr15 37255578 37255889 -48439865 - L1MA10 LINE L1 -4 6330 6029 2326 84 0 16 chr15 37256162 37256473 -48439281 + AluY SINE Alu 2 307 -4 1883 139 24 10 chr15 37256483 37256771 -48438983 + AluSx SINE Alu 1 292 -20 225 337 117 10 chr15 37256981 37257186 -48438568 + L2 LINE L2 2154 2380 -934 2267 110 3 0 chr15 37257803 37258104 -48437650 + AluSx SINE Alu 1 302 -10 1673 194 31 18 chr15 37259362 37259743 -48436011 + L1MA6 LINE L1 5915 6300 0 37 39 0 0 chr15 37260213 37260264 -48435490 + AT_rich Low_complexity Low_complexity 1 51 0 2872 136 44 0 chr15 37260434 37260862 -48434892 - MER1A DNA MER1_type -82 447 1 1948 104 0 0 chr15 37261145 37261394 -48434360 + AluSc SINE Alu 44 292 -17 186 43 0 0 chr15 37261395 37261418 -48434336 + (TA)n Simple_repeat Simple_repeat 2 24 0 1436 185 76 0 chr15 37261433 37261709 -48434045 + AluSx SINE Alu 1 297 -15 1593 155 29 0 chr15 37262534 37262811 -48432943 + AluJb SINE Alu 14 298 -14 1537 179 155 18 chr15 37263209 37263479 -48432275 + L1MC3 LINE L1 6708 7046 -739 1918 148 0 10 chr15 37263479 37263783 -48431971 + AluSx SINE Alu 1 301 -11 1537 179 155 18 chr15 37263783 37263892 -48431862 + L1MC3 LINE L1 7046 7139 -646 580 165 0 0 chr15 37263957 37264048 -48431706 + AluJ/FLAM SINE Alu 1 91 -221 207 278 37 0 chr15 37264726 37264780 -48430974 + MIR3 SINE MIR 147 202 -6 188 247 68 41 chr15 37265353 37265426 -48430328 + L2 LINE L2 3224 3298 -15 849 179 42 47 chr15 37265613 37265803 -48429951 + MER20 DNA MER1_type 31 219 0 435 259 282 6 chr15 37265831 37266005 -48429749 + MIR SINE MIR 38 259 -3 541 211 114 0 chr15 37266009 37266123 -48429631 + L2 LINE L2 3187 3313 0 277 346 19 31 chr15 37266174 37266270 -48429484 - L2 LINE L2 -947 2367 2272 1810 163 48 0 chr15 37266270 37266564 -48429190 + AluJb SINE Alu 1 308 -4 277 346 19 31 chr15 37266564 37266626 -48429128 - L2 LINE L2 -1042 2272 2211 1415 160 56 35 chr15 37267516 37267827 -48427927 + AluJb SINE Alu 1 317 0 194 281 177 0 chr15 37267868 37267964 -48427790 + MIR SINE MIR 54 166 -96 773 250 6 0 chr15 37267968 37268132 -48427622 - AluJb SINE Alu -20 292 128 659 167 8 45 chr15 37268155 37268287 -48427467 - AluSq/x SINE Alu -181 132 6 24 32 0 0 chr15 37268291 37268322 -48427432 + AT_rich Low_complexity Low_complexity 1 31 0 507 247 0 0 chr15 37268442 37268535 -48427219 + FLAM_A SINE Alu 2 94 -48 399 254 84 14 chr15 37268932 37269074 -48426680 + L1M4 LINE L1 5015 5166 -980 1928 156 35 11 chr15 37269076 37269447 -48426307 - L1M3 LINE L1 -509 5671 5292 22 0 0 0 chr15 37269477 37269499 -48426255 + AT_rich Low_complexity Low_complexity 1 22 0 830 144 0 0 chr15 37269499 37269617 -48426137 - AluJb SINE Alu -194 118 1 783 180 16 36 chr15 37269625 37269819 -48425935 - L1M3 LINE L1 -858 5288 5099 27 29 0 0 chr15 37270334 37270368 -48425386 + AT_rich Low_complexity Low_complexity 1 34 0 493 336 106 0 chr15 37270650 37270867 -48424887 + MIR SINE MIR 23 262 0 1164 175 14 31 chr15 37271126 37271349 -48424405 - MER20 DNA MER1_type 0 219 1 2141 106 0 10 chr15 37274172 37274465 -48421289 + AluSg SINE Alu 1 290 -20 291 262 148 54 chr15 37275537 37275686 -48420068 - MER5B DNA MER1_type -9 169 7 600 237 0 30 chr15 37275699 37275834 -48419920 + FLAM_A SINE Alu 3 133 0 23 0 0 0 chr15 37275924 37275947 -48419807 + AT_rich Low_complexity Low_complexity 1 23 0 839 128 26 150 chr15 37276498 37276665 -48419089 + L1MB2 LINE L1 5934 6067 -104 1418 159 65 47 chr15 37276665 37276941 -48418813 - AluJb SINE Alu -29 283 3 839 128 26 150 chr15 37276941 37277000 -48418754 + L1MB2 LINE L1 6067 6132 -39 3001 206 39 47 chr15 37277156 37277874 -48417880 - L1ME1 LINE L1 -32 6134 5412 1761 176 3 6 chr15 37277874 37278187 -48417567 + AluJb SINE Alu 1 312 0 3001 206 39 47 chr15 37278187 37278235 -48417519 - L1ME1 LINE L1 -754 5412 5365 1698 200 3 0 chr15 37278235 37278535 -48417219 - AluJb SINE Alu -11 301 1 3001 206 39 47 chr15 37278535 37278626 -48417128 - L1ME1 LINE L1 -801 5365 5275 1204 194 171 8 chr15 37278626 37278889 -48416865 + AluSx SINE Alu 1 306 -6 3001 206 39 47 chr15 37278889 37279238 -48416516 - L1ME1 LINE L1 -891 5275 4925 1806 165 3 7 chr15 37279256 37279565 -48416189 + AluJb SINE Alu 1 308 -4 21 57 0 0 chr15 37279632 37279667 -48416087 + AT_rich Low_complexity Low_complexity 1 35 0 2252 91 6 22 chr15 37280260 37280578 -48415176 + AluSq SINE Alu 1 313 0 2133 113 0 0 chr15 37281418 37281701 -48414053 + AluSq SINE Alu 1 283 -30 211 211 0 0 chr15 37281783 37281821 -48413933 - MIR SINE MIR -75 133 96 462 204 19 0 chr15 37282049 37282152 -48413602 + L1ME LINE L1 5638 5742 -424 1969 134 3 7 chr15 37282292 37282591 -48413163 + AluSq SINE Alu 1 298 -15 301 254 82 9 chr15 37282713 37282823 -48412931 + L1MB3 LINE L1 4491 4608 -1538 387 325 63 29 chr15 37282930 37283308 -48412446 + L1MB3 LINE L1 4757 5147 -999 1776 158 3 7 chr15 37283338 37283622 -48412132 + AluJb SINE Alu 17 299 -13 714 209 32 114 chr15 37283691 37284006 -48411748 + L1MB3 LINE L1 5254 5542 -2266 330 105 18 0 chr15 37284574 37284631 -48411123 + Alu SINE Alu 3 60 -240 2419 132 66 2 chr15 37284631 37285071 -48410683 + L1MB3 LINE L1 5699 6166 -17 315 176 0 0 chr15 37285173 37285224 -48410530 + LTR16B LTR ERVL 414 464 0 309 282 107 10 chr15 37285332 37285435 -48410319 + L2 LINE L2 3189 3301 -12 229 363 0 11 chr15 37285460 37285551 -48410203 - L2 LINE L2 -830 2484 2395 271 294 129 6 chr15 37285977 37286140 -48409614 + L1 LINE L1 4037 4219 -1927 307 335 18 41 chr15 37286222 37286392 -48409362 + L1 LINE L1 4301 4466 -1680 2364 81 0 3 chr15 37286493 37286791 -48408963 - AluSx SINE Alu -15 297 1 2071 114 7 0 chr15 37287596 37287885 -48407869 + AluSx SINE Alu 1 291 -21 456 285 112 11 chr15 37288016 37288195 -48407559 + MIR SINE MIR 29 225 -37 2089 135 0 0 chr15 37288305 37288602 -48407152 + AluSx SINE Alu 1 297 -15 1483 78 37 14 chr15 37288618 37288836 -48406918 + L1PB1 LINE L1 5928 6150 -1 312 192 51 40 chr15 37289480 37289707 -48406047 + (TA)n Simple_repeat Simple_repeat 1 229 0 2214 132 0 0 chr15 37289776 37290079 -48405675 - AluSx SINE Alu -9 303 1 32 26 0 0 chr15 37290490 37290529 -48405225 + AT_rich Low_complexity Low_complexity 1 39 0 1668 141 13 61 chr15 37290529 37290842 -48404912 + AluJb SINE Alu 13 310 -2 2418 92 0 3 chr15 37291697 37292002 -48403752 + AluSq SINE Alu 1 304 -9 549 240 25 99 chr15 37292521 37292663 -48403091 + L1MC4a LINE L1 5566 5678 -2130 2219 88 3 27 chr15 37292663 37292959 -48402795 - AluSg SINE Alu -15 295 7 549 240 25 99 chr15 37292959 37293099 -48402655 + L1MC4a LINE L1 5678 5827 -1981 380 301 48 38 chr15 37293284 37293470 -48402284 + L1MC4a LINE L1 6101 6288 -1520 272 89 22 0 chr15 37293513 37293558 -48402196 - MADE1 DNA Mariner 0 80 35 1208 214 3 64 chr15 37293806 37294119 -48401635 + AluJo SINE Alu 2 295 -17 1382 220 35 77 chr15 37294133 37294224 -48401530 + L1MC5 LINE L1 6643 6736 -1225 2161 106 3 3 chr15 37294224 37294517 -48401237 + AluSc SINE Alu 1 293 -16 1382 220 35 77 chr15 37294517 37294975 -48400779 + L1MC5 LINE L1 6736 7166 -795 2279 96 3 0 chr15 37294975 37295267 -48400487 + AluSp SINE Alu 1 293 -20 1382 220 35 77 chr15 37295267 37295339 -48400415 + L1MC5 LINE L1 7166 7239 -722 226 193 0 70 chr15 37295456 37295513 -48400241 + L1MC5 LINE L1 7306 7358 -603 231 275 131 0 chr15 37295569 37295729 -48400025 + L1MC4 LINE L1 7861 8041 -1 2430 65 3 0 chr15 37296392 37296683 -48399071 - AluSp SINE Alu -20 293 2 1600 171 13 23 chr15 37297109 37297418 -48398336 + AluJb SINE Alu 7 312 0 1927 140 26 69 chr15 37297562 37297879 -48397875 + THE1B LTR MaLR 2 302 -62 1798 120 68 20 chr15 37297879 37298171 -48397583 + AluSx SINE Alu 1 306 -6 1927 140 26 69 chr15 37298171 37298232 -48397522 + THE1B LTR MaLR 302 364 0 2351 122 25 5 chr15 37298232 37298745 -48397009 + THE1B-int LTR MaLR 1 563 -1017 1583 88 22 0 chr15 37298743 37298971 -48396783 + THE1B-int LTR MaLR 1348 1580 0 * 2271 112 39 17 chr15 37298971 37299327 -48396427 + THE1B LTR MaLR 1 364 0 203 301 27 55 chr15 37299450 37299523 -48396231 + MIR SINE MIR 41 111 -97 469 242 53 23 chr15 37299685 37299817 -48395937 + MIR SINE MIR 127 262 0 348 251 61 20 chr15 37299853 37300099 -48395655 + L1MC4a LINE L1 5557 5846 -1962 1418 204 4 0 chr15 37301557 37301821 -48393933 + AluJb SINE Alu 39 303 -9 2201 129 0 0 chr15 37302001 37302295 -48393459 + AluSx SINE Alu 1 294 -18 527 211 152 25 chr15 37304344 37304548 -48391206 - L1ME3A LINE L1 0 6170 5941 1549 152 75 50 chr15 37305006 37305160 -48390594 + L1MB8 LINE L1 5461 5610 -568 2149 121 3 3 chr15 37305160 37305458 -48390296 + AluSx SINE Alu 1 298 -14 1549 152 75 50 chr15 37305458 37305664 -48390090 + L1MB8 LINE L1 5610 5830 -348 978 152 123 9 chr15 37305717 37305928 -48389826 + Tigger7 DNA MER2_type 2251 2485 -2 855 155 72 107 chr15 37305930 37306122 -48389632 + L1MB8 LINE L1 5828 6025 -153 1996 85 64 4 chr15 37306122 37306403 -48389351 + AluSq SINE Alu 1 298 -15 2253 101 3 16 chr15 37306407 37306714 -48389040 + AluSx SINE Alu 1 303 -9 855 155 72 107 chr15 37306714 37306806 -48388948 + L1MB8 LINE L1 6028 6107 -71 2249 102 3 0 chr15 37308210 37308515 -48387239 + AluSp SINE Alu 1 306 -7 243 224 149 0 chr15 37308768 37308835 -48386919 - MER58A DNA MER1_type -26 81 5 329 132 0 0 chr15 37309289 37309342 -48386412 - AluJo SINE Alu -20 282 230 279 211 18 0 chr15 37309340 37309397 -48386357 + AluJo/FRAM SINE Alu 189 246 -56 * 1275 175 14 5 chr15 37309397 37309614 -48386140 - AluJo SINE Alu -85 227 9 705 200 57 7 chr15 37309649 37309789 -48385965 - FRAM SINE Alu -30 146 1 641 219 9 0 chr15 37309888 37310002 -48385752 - FLAM_A SINE Alu -17 116 2 2316 101 0 3 chr15 37310945 37311252 -48384502 + AluSx SINE Alu 1 306 -6 356 273 153 0 chr15 37311330 37311480 -48384274 - L1M4 LINE L1 -765 5381 5209 2384 91 0 3 chr15 37312484 37312791 -48382963 - AluSx SINE Alu -6 306 1 926 229 0 0 chr15 37312797 37312972 -48382782 - FAM SINE Alu 0 175 1 540 255 55 21 chr15 37313196 37313341 -48382413 - MIR SINE MIR -112 150 1 286 232 99 63 chr15 37313539 37313681 -48382073 + L1MC4a LINE L1 5520 5666 -2142 323 229 131 46 chr15 37313684 37313837 -48381917 + L1MC4a LINE L1 5732 5897 -1911 919 124 0 0 chr15 37314660 37314789 -48380965 - FLAM_C SINE Alu -4 129 1 11274 121 33 108 chr15 37316113 37317867 -48377887 + Tigger1 DNA MER2_type 55 1938 -480 1829 149 7 39 chr15 37317867 37318176 -48377578 - AluSx SINE Alu -11 301 3 1421 210 57 4 chr15 37318180 37318461 -48377293 - AluJb SINE Alu -16 296 1 11274 121 33 108 chr15 37318461 37318615 -48377139 + Tigger1 DNA MER2_type 1941 2105 -313 2352 63 17 7 chr15 37318615 37318916 -48376838 + AluY SINE Alu 1 304 -7 11274 121 33 108 chr15 37318916 37319555 -48376199 + Tigger1 DNA MER2_type 2105 2418 0 1719 146 16 42 chr15 37319657 37319966 -48375788 - AluJb SINE Alu -11 301 1 2455 62 0 7 chr15 37320046 37320351 -48375403 - AluY SINE Alu -8 303 1 670 214 15 8 chr15 37321194 37321325 -48374429 + FLAM_A SINE Alu 2 133 0 2287 107 3 0 chr15 37322274 37322573 -48373181 - AluSg SINE Alu -10 300 1 265 106 0 0 chr15 37322712 37322759 -48372995 + AluSp/q SINE Alu 255 301 -2 2092 118 4 0 chr15 37322766 37323038 -48372716 - AluSx SINE Alu -34 278 6 959 125 0 0 chr15 37323118 37323262 -48372492 - AluSg/x SINE Alu 0 310 167 200 206 0 0 chr15 37323990 37324024 -48371730 + polypurine Low_complexity Low_complexity 5 38 0 274 231 17 29 chr15 37324026 37324264 -48371490 + GA-rich Low_complexity Low_complexity 1 235 0 2205 92 7 3 chr15 37324745 37325040 -48370714 - AluSp SINE Alu -17 296 1 1332 159 0 19 chr15 37325434 37325641 -48370113 - AluJb SINE Alu -107 205 3 366 284 167 12 chr15 37325756 37325918 -48369836 + MIR SINE MIR 3 189 -73 313 197 57 74 chr15 37326335 37326457 -48369297 - MLT1K LTR MaLR 0 588 469 288 171 158 0 chr15 37326669 37326751 -48369003 + Charlie4 DNA MER1_type 5 99 -1862 2495 63 0 3 chr15 37326809 37327112 -48368642 - AluY SINE Alu -7 304 3 2202 147 0 0 chr15 37327914 37328226 -48367528 + AluSx SINE Alu 1 312 0 458 159 192 0 chr15 37328228 37328379 -48367375 + Charlie1 DNA MER1_type 2433 2612 -149 243 313 35 26 chr15 37328499 37328614 -48367140 + L3 LINE CR1 646 761 -816 1904 170 7 3 chr15 37328643 37328943 -48366811 - AluJb SINE Alu -11 301 1 793 201 98 49 chr15 37329333 37329357 -48366397 + L1ME1 LINE L1 1903 1924 -4472 2150 102 11 7 chr15 37329357 37329667 -48366087 + AluSx SINE Alu 1 311 0 793 201 98 49 chr15 37329667 37329969 -48365785 + L1ME1 LINE L1 1924 2246 -4150 1613 238 142 47 chr15 37329989 37330097 -48365657 + L1ME1 LINE L1 4875 4971 -1264 1843 151 3 10 chr15 37330097 37330401 -48365353 + AluJo SINE Alu 1 302 -10 1613 238 142 47 chr15 37330401 37331538 -48364216 + L1ME1 LINE L1 4971 6226 -9 2079 101 0 7 chr15 37331550 37331827 -48363927 + AluSg1 SINE Alu 21 295 -14 265 204 88 26 chr15 37331997 37332110 -48363644 + L1MC4 LINE L1 7922 8041 -1 926 233 49 28 chr15 37332120 37332408 -48363346 + L1ME2 LINE L1 5861 6154 -10 441 276 92 7 chr15 37332642 37332794 -48362960 + MIR SINE MIR 40 204 -58 604 141 99 16 chr15 37333297 37333418 -48362336 + FLAM_C SINE Alu 1 131 -12 548 231 130 6 chr15 37334742 37334911 -48360843 - L2 LINE L2 -6 3307 3118 1941 152 0 10 chr15 37334914 37335210 -48360544 + AluJb SINE Alu 2 294 -18 1648 172 38 0 chr15 37335210 37335500 -48360254 + AluJb SINE Alu 1 301 -11 571 194 23 16 chr15 37335506 37335635 -48360119 + FAM SINE Alu 1 42 -7 310 282 153 59 chr15 37335670 37335908 -48359846 - L2 LINE L2 -269 3044 2787 21 0 0 0 chr15 37336047 37336068 -48359686 + AT_rich Low_complexity Low_complexity 1 21 0 590 209 9 0 chr15 37336424 37336539 -48359215 + Tigger7 DNA MER2_type 1 116 -589 981 136 298 15 chr15 37336556 37336821 -48358933 + Tigger7 DNA MER2_type 2148 2487 0 258 240 50 10 chr15 37337244 37337344 -48358410 + HAL1 LINE L1 1222 1325 -1182 637 300 91 0 chr15 37337345 37337565 -48358189 + L2 LINE L2 2820 3059 -254 243 261 182 11 chr15 37337692 37337780 -48357974 + L2 LINE L2 3203 3305 -8 2019 129 10 0 chr15 37337891 37338186 -48357568 - AluSx SINE Alu -14 298 1 1491 171 4 0 chr15 37338221 37338461 -48357293 + AluJb SINE Alu 69 309 -3 4322 186 78 57 chr15 37338467 37338517 -48357237 - Charlie1a DNA MER1_type -1361 1400 1353 2043 163 89 0 chr15 37338517 37338909 -48356845 + MSTA LTR MaLR 1 427 -1 4322 186 78 57 chr15 37338909 37338976 -48356778 - Charlie1a DNA MER1_type -1408 1353 1289 2203 106 7 0 chr15 37338976 37339269 -48356485 + AluSx SINE Alu 1 295 -17 4322 186 78 57 chr15 37339269 37340150 -48355604 - Charlie1a DNA MER1_type -1472 1289 428 1358 116 19 0 chr15 37340150 37340366 -48355388 + L1PA13 LINE L1 5944 6163 0 4322 186 78 57 chr15 37340366 37340409 -48355345 - Charlie1a DNA MER1_type -2333 428 387 2191 108 0 16 chr15 37340409 37340724 -48355030 + AluSg SINE Alu 1 310 0 4322 186 78 57 chr15 37340724 37340771 -48354983 - Charlie1a DNA MER1_type -2374 387 342 2208 98 3 13 chr15 37340771 37341076 -48354678 - AluSc SINE Alu -7 302 1 4322 186 78 57 chr15 37341076 37341353 -48354401 - Charlie1a DNA MER1_type -2419 342 2 254 298 53 53 chr15 37341613 37341801 -48353953 + HAL1 LINE L1 2316 2503 -4 267 31 0 0 chr15 37341934 37341966 -48353788 + (A)n Simple_repeat Simple_repeat 1 32 0 1944 145 0 32 chr15 37342010 37342321 -48353433 - AluSx SINE Alu -11 301 1 1232 216 74 113 chr15 37342706 37342847 -48352907 + L1MC4 LINE L1 6796 6941 -1101 2194 74 7 33 chr15 37342847 37343146 -48352608 + AluSg1 SINE Alu 1 291 -18 1232 216 74 113 chr15 37343146 37343533 -48352221 + L1MC4 LINE L1 6941 7303 -739 1088 228 76 55 chr15 37343538 37343843 -48351911 + L1MC4 LINE L1 7600 7918 -124 1988 129 34 3 chr15 37343843 37344138 -48351616 + AluSx SINE Alu 1 304 -8 1088 228 76 55 chr15 37344138 37344266 -48351488 + L1MC4 LINE L1 7918 8042 0 2093 125 7 3 chr15 37344273 37344578 -48351176 + AluSx SINE Alu 1 306 -6 2025 105 0 92 chr15 37345070 37345385 -48350369 - AluSx SINE Alu -26 286 1 2103 124 0 13 chr15 37345429 37345728 -48350026 - AluSx SINE Alu -17 295 1 1780 185 0 6 chr15 37345762 37346076 -48349678 - AluJb SINE Alu 0 312 1 536 250 44 85 chr15 37346087 37346268 -48349486 - L1MC5 LINE L1 -37 7924 7737 2024 111 7 4 chr15 37346268 37346574 -48349180 + AluSx SINE Alu 2 308 0 536 250 44 85 chr15 37346574 37346803 -48348951 - L1MC5 LINE L1 -224 7737 7530 648 267 175 35 chr15 37346923 37347238 -48348516 + L2 LINE L2 2938 3296 -17 1836 123 40 27 chr15 37347298 37347598 -48348156 - AluSg SINE Alu -6 304 1 1968 112 37 17 chr15 37347938 37348234 -48347520 - AluSx SINE Alu -10 302 1 184 303 111 62 chr15 37348365 37348527 -48347227 - MIR3 SINE MIR -9 199 30 22 35 0 0 chr15 37348783 37348812 -48346942 + AT_rich Low_complexity Low_complexity 1 29 0 259 138 15 31 chr15 37350847 37350912 -48344842 + (CCG)n Simple_repeat Simple_repeat 2 65 0 493 281 122 0 chr15 37351516 37351712 -48344042 + MIR SINE MIR 37 256 -6 2181 101 7 0 chr15 37351797 37352095 -48343659 + AluSx SINE Alu 1 300 -12 2190 85 0 3 chr15 37352095 37352430 -48343324 + AluY SINE Alu 1 334 0 386 197 0 0 chr15 37352646 37352712 -48343042 + MER3 DNA MER1_type 46 111 -98 191 184 0 20 chr15 37352713 37352762 -48342992 + CT-rich Low_complexity Low_complexity 6 53 0 22 0 0 0 chr15 37352762 37352784 -48342970 + AT_rich Low_complexity Low_complexity 1 22 0 625 128 60 0 chr15 37352784 37352917 -48342837 + MER3 DNA MER1_type 2369 2509 0 626 153 172 61 chr15 37352933 37353096 -48342658 + MER20 DNA MER1_type 37 217 -2 287 349 71 18 chr15 37353128 37353409 -48342345 - L2 LINE L2 -1639 1675 1380 400 141 41 0 chr15 37353922 37354043 -48341711 + (TA)n Simple_repeat Simple_repeat 2 127 0 329 371 14 9 chr15 37354084 37354297 -48341457 + L2 LINE L2 1462 1675 -1639 1977 133 7 0 chr15 37355384 37355670 -48340084 + AluSx SINE Alu 1 288 -24 1710 106 34 8 chr15 37355995 37356231 -48339523 + AluSx SINE Alu 1 242 -70 771 69 0 0 chr15 37356251 37356353 -48339401 + (GAA)n Simple_repeat Simple_repeat 3 104 0 1735 186 3 7 chr15 37356844 37357140 -48338614 + AluJo SINE Alu 1 295 -17 215 269 19 0 chr15 37357158 37357210 -48338544 + MIR3 SINE MIR 149 201 -7 823 171 14 0 chr15 37357496 37357642 -48338112 + FAM SINE Alu 1 48 -1 2219 99 3 0 chr15 37358422 37358716 -48337038 + AluSp SINE Alu 1 295 -18 2107 144 0 3 chr15 37359129 37359442 -48336312 - AluSx SINE Alu 0 312 1 1965 122 6 80 chr15 37359461 37359798 -48335956 - AluSx SINE Alu 0 312 1 527 259 124 24 chr15 37359828 37360118 -48335636 + HAL1 LINE L1 920 1238 -1269 492 110 0 49 chr15 37360148 37360230 -48335524 + FLAM_A SINE Alu 54 131 -11 329 259 35 0 chr15 37360233 37360318 -48335436 + HAL1 LINE L1 1230 1317 -1190 1935 178 16 22 chr15 37360345 37360711 -48335043 - L1M4 LINE L1 -405 5769 5406 1825 154 41 3 chr15 37360814 37361107 -48334647 + AluJb SINE Alu 1 304 -8 268 263 166 60 chr15 37361144 37361243 -48334511 - L1MEc LINE L1 -4453 1857 1770 2113 105 0 26 chr15 37361243 37361547 -48334207 - AluSg SINE Alu -14 296 1 268 263 166 60 chr15 37361547 37361674 -48334080 - L1MEc LINE L1 -4540 1770 1658 348 83 0 0 chr15 37361674 37361722 -48334032 + (TA)n Simple_repeat Simple_repeat 2 49 0 2408 81 3 0 chr15 37361722 37362017 -48333737 - AluSp SINE Alu -17 296 1 268 263 166 60 chr15 37362017 37362324 -48333430 - L1MEc LINE L1 -4651 1659 1265 328 316 71 49 chr15 37362334 37362923 -48332831 - L1MEc LINE L1 -4931 1188 587 2024 134 3 10 chr15 37362997 37363296 -48332458 - AluSx SINE Alu -13 299 3 540 258 8 0 chr15 37363673 37363793 -48331961 + L2 LINE L2 2239 2359 -955 229 204 19 0 chr15 37363870 37363924 -48331830 - L1P5 LINE L1 -719 5432 5378 2317 104 0 7 chr15 37364008 37364316 -48331438 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr15 37364388 37364413 -48331341 + AT_rich Low_complexity Low_complexity 1 25 0 4778 259 66 65 chr15 37364413 37365310 -48330444 + L1MEc LINE L1 75 969 -5246 1963 162 0 3 chr15 37365310 37365612 -48330142 + AluJb SINE Alu 1 301 -11 4778 259 66 65 chr15 37365612 37365793 -48329961 + L1MEc LINE L1 969 1148 -5067 2299 104 0 3 chr15 37365793 37366091 -48329663 + AluSg SINE Alu 1 297 -13 4778 259 66 65 chr15 37366091 37366330 -48329424 + L1MEc LINE L1 1148 1385 -4830 2081 129 10 3 chr15 37366330 37366632 -48329122 - AluSx SINE Alu -8 304 1 4778 259 66 65 chr15 37366632 37366735 -48329019 + L1MEc LINE L1 1385 1486 -4729 1703 172 54 3 chr15 37366735 37367031 -48328723 + AluJb SINE Alu 1 311 -1 4778 259 66 65 chr15 37367031 37367880 -48327874 + L1MEc LINE L1 1486 2332 -3883 1465 151 0 0 chr15 37367880 37368092 -48327662 + AluJo SINE Alu 1 212 -100 4778 259 66 65 chr15 37368092 37368136 -48327618 + L1MEc LINE L1 2332 2374 -3841 2251 118 0 0 chr15 37368136 37368441 -48327313 + AluSc SINE Alu 1 305 -4 4778 259 66 65 chr15 37368441 37368682 -48327072 + L1MEc LINE L1 2374 2613 -3602 180 0 0 0 chr15 37368682 37368702 -48327052 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2163 88 3 11 chr15 37368705 37368989 -48326765 - AluSx SINE Alu -30 282 1 4778 259 66 65 chr15 37368989 37369038 -48326716 + L1MEc LINE L1 2614 2661 -3554 2324 103 0 0 chr15 37369038 37369340 -48326414 - AluSx SINE Alu -10 302 1 4778 259 66 65 chr15 37369340 37369620 -48326134 + L1MEc LINE L1 2661 2939 -3276 2255 92 3 3 chr15 37369620 37369915 -48325839 + AluSx SINE Alu 1 295 -17 4778 259 66 65 chr15 37369915 37369929 -48325825 + L1MEc LINE L1 2939 2951 -3264 2271 93 0 17 chr15 37369929 37370229 -48325525 + AluSq SINE Alu 1 295 -18 1927 95 8 0 chr15 37370236 37370488 -48325266 - AluSx SINE Alu -58 254 1 4778 259 66 65 chr15 37370488 37370701 -48325053 + L1MEc LINE L1 2956 3208 -3007 771 161 8 15 chr15 37370838 37370968 -48324786 - L1MC3 LINE L1 -232 7553 7425 602 227 9 0 chr15 37372115 37372225 -48323529 + AluJb SINE Alu 11 121 -191 180 0 0 0 chr15 37372225 37372245 -48323509 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 445 243 11 88 chr15 37372245 37372426 -48323328 - AluY SINE Alu -26 285 119 518 230 24 24 chr15 37372723 37372849 -48322905 + AluJb SINE Alu 11 136 -176 1398 190 7 34 chr15 37372851 37373146 -48322608 - AluJb SINE Alu -25 287 1 371 291 9 9 chr15 37373183 37373293 -48322461 - MIR3 SINE MIR -30 178 69 240 255 149 0 chr15 37373352 37373446 -48322308 - MIR SINE MIR -95 167 60 1875 165 7 3 chr15 37373546 37373849 -48321905 + AluJb SINE Alu 1 304 -8 507 60 0 0 chr15 37373850 37373917 -48321837 + (CA)n Simple_repeat Simple_repeat 2 68 0 1651 136 37 83 chr15 37373955 37374129 -48321625 - AluJo SINE Alu -3 309 128 201 74 0 0 chr15 37374129 37374156 -48321598 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 2105 122 0 0 chr15 37374156 37374444 -48321310 - AluSx SINE Alu -24 288 1 1651 136 37 83 chr15 37374444 37374592 -48321162 - AluJo SINE Alu -182 130 1 520 209 0 27 chr15 37374597 37374707 -48321047 + FLAM_C SINE Alu 30 136 -7 1731 131 25 62 chr15 37374798 37375118 -48320636 + AluSx SINE Alu 5 312 0 2125 101 4 0 chr15 37375138 37375438 -48320316 + AluSx SINE Alu 6 306 0 1783 154 13 13 chr15 37375529 37375841 -48319913 - AluJb SINE Alu 0 312 1 2252 119 7 3 chr15 37376403 37376706 -48319048 + AluSq SINE Alu 1 304 -9 233 271 14 29 chr15 37377071 37377141 -48318613 + L1MC5 LINE L1 7845 7913 -48 572 158 11 32 chr15 37377141 37377236 -48318518 + AluJo SINE Alu 122 214 -98 * 690 168 0 9 chr15 37377234 37377347 -48318407 - AluJb SINE Alu -2 310 199 246 207 0 0 chr15 37377347 37377405 -48318349 + FLAM_A SINE Alu 75 132 -1 1359 176 96 79 chr15 37377580 37377861 -48317893 + L1M4 LINE L1 5292 5586 -598 2148 117 0 0 chr15 37377861 37378169 -48317585 + AluSx SINE Alu 1 308 0 1359 176 96 79 chr15 37378169 37378322 -48317432 + L1M4 LINE L1 5586 5735 -449 1329 266 7 3 chr15 37378441 37378730 -48317024 - MLT1F LTR MaLR -241 301 12 2151 117 0 0 chr15 37379013 37379323 -48316431 + AluSx SINE Alu 1 310 0 691 222 63 6 chr15 37379596 37379771 -48315983 - L1ME3A LINE L1 -339 5814 5610 676 250 12 42 chr15 37379773 37379964 -48315790 + AluJb SINE Alu 137 312 0 533 271 52 22 chr15 37379966 37380243 -48315511 - L1ME3A LINE L1 -538 5615 5343 255 61 0 0 chr15 37380260 37380293 -48315461 + (CA)n Simple_repeat Simple_repeat 1 33 0 1679 173 0 46 chr15 37380345 37380668 -48315086 - AluSg SINE Alu 0 310 3 24 0 0 0 chr15 37380937 37380961 -48314793 + AT_rich Low_complexity Low_complexity 1 24 0 934 268 10 34 chr15 37380961 37381256 -48314498 - AluSx SINE Alu -14 288 1 421 253 112 24 chr15 37381264 37381513 -48314241 - L1ME3A LINE L1 -825 5304 5034 2514 264 155 88 chr15 37381891 37382335 -48313419 - L1ME3A LINE L1 -1197 4932 4519 2225 118 0 3 chr15 37382335 37382632 -48313122 + AluSx SINE Alu 3 298 -14 2354 84 0 26 chr15 37382633 37382942 -48312812 + AluY SINE Alu 1 301 -10 2514 264 155 88 chr15 37382942 37383083 -48312671 - L1ME3A LINE L1 -1610 4519 4389 2169 105 0 3 chr15 37383083 37383400 -48312354 + AluSx SINE Alu 1 316 0 2514 264 155 88 chr15 37383400 37383474 -48312280 - L1ME3A LINE L1 -1740 4389 4321 1491 170 0 102 chr15 37383474 37383798 -48311956 + AluJo SINE Alu 1 291 -21 2514 264 155 88 chr15 37383798 37384212 -48311542 - L1ME3A LINE L1 -1808 4321 3936 2319 114 0 0 chr15 37384212 37384520 -48311234 - AluSg SINE Alu -2 308 1 2514 264 155 88 chr15 37384520 37384691 -48311063 - L1ME3A LINE L1 -2193 3936 3778 1650 183 7 14 chr15 37384691 37384986 -48310768 - AluSx SINE Alu -17 295 3 2514 264 155 88 chr15 37384986 37385174 -48310580 - L1ME3A LINE L1 -2351 3778 3604 1532 203 0 10 chr15 37385174 37385464 -48310290 - AluSx SINE Alu -25 287 1 2514 264 155 88 chr15 37385464 37385503 -48310251 - L1ME3A LINE L1 -2525 3604 3569 2377 74 10 3 chr15 37385503 37385799 -48309955 - AluY SINE Alu -13 298 1 2514 264 155 88 chr15 37385799 37386730 -48309024 - L1ME3A LINE L1 -2560 3569 2360 1387 130 12 83 chr15 37386754 37386804 -48308950 + MER46A DNA MER2_type 2 54 -2677 6352 96 15 12 chr15 37386804 37387854 -48307900 - L1PB1 LINE L1 -3 6148 5078 1387 130 12 83 chr15 37387854 37387973 -48307781 + MER46A DNA MER2_type 54 150 -2581 2418 154 58 14 chr15 37387973 37388388 -48307366 + Tigger2a DNA MER2_type 1 433 -1 1387 130 12 83 chr15 37388388 37388470 -48307284 + MER46A DNA MER2_type 150 236 0 2377 90 0 3 chr15 37388548 37388859 -48306895 - AluSg SINE Alu 0 310 1 279 283 169 17 chr15 37388913 37389150 -48306604 - L1ME3A LINE L1 -4093 2217 1945 2203 113 10 0 chr15 37389326 37389628 -48306126 + AluSg SINE Alu 2 306 -4 2317 91 3 0 chr15 37389631 37389928 -48305826 + AluY SINE Alu 3 300 -11 2028 99 34 27 chr15 37389938 37390232 -48305522 + AluSc SINE Alu 1 296 -13 645 257 54 21 chr15 37390239 37390524 -48305230 - L1MEd LINE L1 -4862 1257 1096 2170 113 3 0 chr15 37390602 37390904 -48304850 - AluSx SINE Alu -9 303 1 245 273 36 0 chr15 37390963 37391018 -48304736 - L1MEd LINE L1 -5483 636 580 1929 116 3 73 chr15 37391162 37391490 -48304264 + AluSx SINE Alu 1 305 -7 2405 68 0 3 chr15 37391765 37392060 -48303694 + AluY SINE Alu 1 294 -17 974 143 0 0 chr15 37392254 37392387 -48303367 + FLAM_C SINE Alu 1 133 0 1888 120 4 11 chr15 37392434 37392710 -48303044 + AluJb SINE Alu 39 312 0 2350 102 0 3 chr15 37392775 37393079 -48302675 - AluSx SINE Alu -7 305 3 1530 107 21 41 chr15 37393081 37393324 -48302430 - AluSx SINE Alu -15 297 60 493 204 19 19 chr15 37393387 37393495 -48302259 + MIR SINE MIR 16 123 -85 312 306 108 96 chr15 37394456 37395184 -48300570 - L1M2 LINE L1 -5478 1371 635 320 69 14 42 chr15 37397493 37397565 -48298189 + (TA)n Simple_repeat Simple_repeat 1 70 0 835 150 43 7 chr15 37397565 37397705 -48298049 - FRAM SINE Alu -24 152 8 1783 97 39 81 chr15 37397849 37398157 -48297597 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr15 37398341 37398370 -48297384 + AT_rich Low_complexity Low_complexity 1 29 0 754 130 65 32 chr15 37398561 37398684 -48297070 + FLAM_C SINE Alu 1 127 -6 1904 84 76 0 chr15 37398807 37399093 -48296661 - AluSp SINE Alu 0 306 1 265 321 27 0 chr15 37399190 37399302 -48296452 + MIR3 SINE MIR 89 203 -5 438 266 37 0 chr15 37400642 37400751 -48295003 + L2 LINE L2 3197 3309 -4 2011 114 3 88 chr15 37400803 37401145 -48294609 + AluSq SINE Alu 1 313 0 2237 114 3 0 chr15 37401461 37401759 -48293995 + AluSg SINE Alu 1 299 -11 489 299 35 35 chr15 37402173 37402347 -48293407 - MER5B DNA MER1_type -1 177 4 2013 150 0 0 chr15 37402735 37403035 -48292719 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr15 37403280 37403309 -48292445 + AT_rich Low_complexity Low_complexity 1 29 0 859 199 13 0 chr15 37403389 37403545 -48292209 + AluJb SINE Alu 137 294 -18 644 209 54 9 chr15 37403706 37403971 -48291783 + MER46C DNA MER2_type 5 317 -21 2274 102 0 16 chr15 37404258 37404573 -48291181 + AluSq SINE Alu 1 310 -3 1400 225 13 7 chr15 37404996 37405298 -48290456 - AluJb SINE Alu -8 304 1 2185 121 0 13 chr15 37405357 37405664 -48290090 + AluSx SINE Alu 1 303 -9 414 119 86 4 chr15 37405688 37405933 -48289821 + (TA)n Simple_repeat Simple_repeat 1 265 0 2202 125 0 3 chr15 37405974 37406279 -48289475 - AluSq SINE Alu -8 305 2 1738 128 4 0 chr15 37406363 37406605 -48289149 + AluSg/x SINE Alu 65 307 -5 269 236 193 62 chr15 37407062 37407223 -48288531 + MIR SINE MIR 48 229 -33 2199 116 3 0 chr15 37407398 37407700 -48288054 - AluSx SINE Alu -9 303 1 1991 147 3 0 chr15 37407708 37408032 -48287722 - AluSx SINE Alu 0 325 1 1685 164 3 20 chr15 37408035 37408340 -48287414 - AluSx SINE Alu -12 300 1 315 284 116 9 chr15 37408434 37408596 -48287158 + MIR SINE MIR 39 212 -50 1339 151 18 127 chr15 37408730 37409061 -48286693 - AluJo SINE Alu -16 296 2 2013 114 14 7 chr15 37409164 37409461 -48286293 + AluSx SINE Alu 3 301 -11 24 0 0 0 chr15 37410132 37410156 -48285598 + AT_rich Low_complexity Low_complexity 1 24 0 2188 107 0 38 chr15 37410319 37410638 -48285116 + AluSx SINE Alu 1 307 -5 2341 95 7 0 chr15 37411900 37412195 -48283559 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr15 37412387 37412413 -48283341 + AT_rich Low_complexity Low_complexity 1 26 0 2124 117 10 0 chr15 37413153 37413460 -48282294 - AluSg SINE Alu 0 310 1 22 56 0 0 chr15 37414909 37414945 -48280809 + AT_rich Low_complexity Low_complexity 1 36 0 2400 70 0 13 chr15 37415971 37416273 -48279481 + AluY SINE Alu 1 298 -13 28 29 0 0 chr15 37416760 37416795 -48278959 + AT_rich Low_complexity Low_complexity 1 35 0 2126 125 3 3 chr15 37417330 37417633 -48278121 + AluSg SINE Alu 1 303 -7 2718 192 79 104 chr15 37418106 37419373 -48276381 - L1MC5 LINE L1 -105 7856 6622 1874 152 14 21 chr15 37419705 37419995 -48275759 + AluJo SINE Alu 1 288 -24 2100 147 0 13 chr15 37420013 37420325 -48275429 + AluJb SINE Alu 1 308 -4 312 27 0 0 chr15 37420337 37420374 -48275380 + (CA)n Simple_repeat Simple_repeat 2 38 0 1644 175 4 0 chr15 37420733 37421034 -48274720 - AluJb SINE Alu 0 302 1 242 159 68 0 chr15 37421599 37421643 -48274111 - L2 LINE L2 -4 3309 3263 39 0 0 0 chr15 37422703 37422742 -48273012 + AT_rich Low_complexity Low_complexity 1 39 0 814 153 0 0 chr15 37422748 37422866 -48272888 - FLAM_C SINE Alu -25 118 1 1848 117 55 21 chr15 37423143 37423278 -48272476 + AluSx SINE Alu 1 130 -182 2183 119 0 0 chr15 37423278 37423588 -48272166 + AluSg SINE Alu 1 310 0 1848 117 55 21 chr15 37423588 37423742 -48272012 + AluSx SINE Alu 130 300 -12 1873 131 0 28 chr15 37423976 37424266 -48271488 + AluJb SINE Alu 1 282 -30 326 233 27 0 chr15 37424489 37424562 -48271192 + MER5A DNA MER1_type 1 75 -114 1250 34 0 0 chr15 37424595 37424743 -48271011 - L1PA4 LINE L1 -8 6147 6000 599 147 165 0 chr15 37424746 37424855 -48270899 + MER5A DNA MER1_type 63 189 0 1111 128 12 103 chr15 37424953 37425089 -48270665 + AluSx SINE Alu 1 107 -205 1606 182 7 0 chr15 37425089 37425380 -48270374 + AluSc SINE Alu 1 293 -16 1111 128 12 103 chr15 37425380 37425485 -48270269 + AluSx SINE Alu 107 220 -92 1718 142 3 36 chr15 37425743 37426045 -48269709 + AluJo SINE Alu 5 296 -16 688 173 16 16 chr15 37426064 37426191 -48269563 + FLAM_A SINE Alu 1 127 -6 364 113 42 14 chr15 37426530 37426601 -48269153 - AluJ/FRAM SINE Alu -6 296 224 25 0 0 0 chr15 37427427 37427452 -48268302 + AT_rich Low_complexity Low_complexity 1 25 0 192 111 0 0 chr15 37429190 37429226 -48266528 + (T)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr15 37429532 37429552 -48266202 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 1878 163 0 7 chr15 37431659 37431954 -48263800 - AluSx SINE Alu -14 298 6 2119 137 0 0 chr15 37433231 37433530 -48262224 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr15 37434152 37434175 -48261579 + AT_rich Low_complexity Low_complexity 1 23 0 606 230 59 20 chr15 37435546 37435698 -48260056 - MIR SINE MIR -85 177 20 1789 207 83 62 chr15 37436332 37437100 -48258654 - MER20B DNA MER1_type 0 784 1 182 240 80 20 chr15 37438204 37438254 -48257500 + MIR SINE MIR 24 76 -132 1840 168 3 16 chr15 37440059 37440374 -48255380 - AluSx SINE Alu -1 311 1 29 0 0 0 chr15 37441393 37441422 -48254332 + AT_rich Low_complexity Low_complexity 1 29 0 2064 113 0 39 chr15 37441666 37441977 -48253777 + AluSx SINE Alu 1 299 -13 432 0 0 0 chr15 37441978 37442026 -48253728 + (CA)n Simple_repeat Simple_repeat 2 49 0 1816 145 34 0 chr15 37442425 37442728 -48253026 - AluSg SINE Alu 0 316 5 1509 189 10 17 chr15 37443310 37443606 -48252148 + AluJo SINE Alu 1 294 -18 2278 99 0 0 chr15 37443628 37443912 -48251842 + AluSc SINE Alu 1 284 -25 2084 127 0 10 chr15 37444131 37444431 -48251323 - AluSq SINE Alu -16 297 1 2289 119 0 0 chr15 37444800 37445110 -48250644 - AluSx SINE Alu -2 310 1 1446 154 101 11 chr15 37445949 37446216 -48249538 - AluSg SINE Alu -19 291 1 927 80 0 0 chr15 37446712 37446824 -48248930 - AluSq/x SINE Alu -201 112 1 2187 118 7 0 chr15 37447297 37447603 -48248151 - AluSx SINE Alu -2 310 3 734 172 0 0 chr15 37447897 37448013 -48247741 + AluJb SINE Alu 2 117 -195 1767 149 17 14 chr15 37448253 37448549 -48247205 - AluSx SINE Alu -15 297 1 993 130 0 59 chr15 37448584 37448753 -48247001 - AluSg/x SINE Alu -17 293 135 584 146 18 195 chr15 37448866 37448925 -48246829 - MER5A DNA MER1_type -3 186 118 1626 169 0 30 chr15 37448925 37449220 -48246534 + AluJb SINE Alu 1 286 -26 584 146 18 195 chr15 37449220 37449386 -48246368 - MER5A DNA MER1_type -71 118 1 583 308 36 5 chr15 37449429 37449624 -48246130 + MIR SINE MIR 28 228 -34 326 276 22 37 chr15 37451425 37451559 -48244195 - MIR SINE MIR -10 252 121 2290 98 7 3 chr15 37451819 37452125 -48243629 - AluSg SINE Alu -3 307 1 1819 104 0 4 chr15 37452135 37452376 -48243378 - AluSg SINE Alu -15 295 56 823 246 166 24 chr15 37453272 37453508 -48242246 + L2 LINE L2 2829 3030 -283 2093 102 20 10 chr15 37453508 37453802 -48241952 + AluSq SINE Alu 1 297 -16 823 246 166 24 chr15 37453802 37453988 -48241766 + L2 LINE L2 3030 3311 -2 1916 164 7 7 chr15 37454433 37454738 -48241016 - AluSx SINE Alu -7 305 1 2369 103 0 0 chr15 37455442 37455752 -48240002 + AluSx SINE Alu 1 310 -2 2240 94 7 0 chr15 37455762 37456050 -48239704 + AluSg SINE Alu 1 290 -20 180 250 173 58 chr15 37456108 37456212 -48239542 - MER5B DNA MER1_type -61 117 2 787 143 48 0 chr15 37456431 37456557 -48239197 + AluJb SINE Alu 2 133 -179 2282 102 0 0 chr15 37456691 37456984 -48238770 + AluSg1 SINE Alu 1 293 -16 254 183 21 86 chr15 37457003 37457096 -48238658 - MER97a DNA MER1_type? -210 684 598 2292 112 0 3 chr15 37457106 37457402 -48238352 - AluSc SINE Alu -14 295 1 447 93 47 35 chr15 37457402 37457488 -48238266 - MER97b DNA MER1_type? -434 619 533 340 176 118 10 chr15 37457502 37457604 -48238150 - L1M4 LINE L1 -1717 4429 4317 * 3110 198 71 37 chr15 37457602 37458294 -48237460 - L1ME2 LINE L1 -10 6154 5487 2100 114 24 3 chr15 37458294 37458591 -48237163 - AluSq SINE Alu -10 303 1 3110 198 71 37 chr15 37458591 37458676 -48237078 - L1ME2 LINE L1 -677 5487 5406 2197 83 0 28 chr15 37458676 37459007 -48236747 - AluSg SINE Alu 0 323 1 3110 198 71 37 chr15 37459007 37459039 -48236715 - L1ME2 LINE L1 -758 5406 5315 2397 87 3 0 chr15 37459303 37459601 -48236153 - AluSp SINE Alu -14 299 1 1767 111 0 0 chr15 37460227 37460471 -48235283 + AluSg/x SINE Alu 69 312 0 325 216 26 52 chr15 37460471 37460535 -48235219 - L1ME2 LINE L1 -1146 5000 4939 2521 118 64 10 chr15 37460535 37460941 -48234813 - MSTA LTR MaLR 0 428 1 325 216 26 52 chr15 37460941 37460992 -48234762 - L1ME2 LINE L1 -1207 4939 4888 1714 125 0 97 chr15 37460993 37461342 -48234412 + AluSx SINE Alu 1 319 0 338 240 16 50 chr15 37461342 37461463 -48234291 - L1ME2 LINE L1 -1598 4548 4432 1416 246 59 30 chr15 37461784 37462255 -48233499 + MLT1D LTR MaLR 1 485 -20 185 214 134 75 chr15 37462610 37462797 -48232957 + L2 LINE L2 2820 3017 -296 480 258 15 0 chr15 37462832 37462899 -48232855 + Charlie5 DNA MER1_type 2472 2536 -88 2619 35 0 16 chr15 37462899 37463215 -48232539 - AluY SINE Alu 0 311 1 480 258 15 0 chr15 37463215 37463279 -48232475 + Charlie5 DNA MER1_type 2536 2605 -19 256 253 60 80 chr15 37463350 37463500 -48232254 - MER58A DNA MER1_type 0 147 1 2576 60 0 9 chr15 37463524 37463840 -48231914 + AluSq SINE Alu 1 313 0 497 241 195 24 chr15 37463857 37464306 -48231448 + MER77 LTR ERV1 37 597 -8 221 224 0 0 chr15 37465011 37465060 -48230694 + MIR SINE MIR 55 103 -159 1960 250 35 48 chr15 37465180 37465615 -48230139 - L1ME2 LINE L1 -1783 4363 3937 1800 110 47 63 chr15 37465615 37465915 -48229839 + AluSg SINE Alu 1 295 -15 1960 250 35 48 chr15 37465915 37466107 -48229647 - L1ME2 LINE L1 -2209 3937 3744 1532 166 101 0 chr15 37466138 37466415 -48229339 + AluJo SINE Alu 1 305 -7 1937 112 3 44 chr15 37466441 37466736 -48229018 + AluSx SINE Alu 9 291 -21 330 26 0 0 chr15 37466736 37466775 -48228979 + (CA)n Simple_repeat Simple_repeat 2 40 0 629 160 42 42 chr15 37466785 37466929 -48228825 - L1MB8 LINE L1 -12 6166 6023 286 151 0 0 chr15 37466929 37466982 -48228772 - AluSp/q SINE Alu -5 298 246 233 73 0 73 chr15 37466977 37467018 -48228736 - Alu SINE Alu -264 38 1 * 2401 198 38 9 chr15 37467018 37467543 -48228211 - L1MB8 LINE L1 -143 6035 5496 1085 158 0 6 chr15 37467548 37467712 -48228042 - AluJb SINE Alu -21 291 129 22 35 0 0 chr15 37467920 37467949 -48227805 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr15 37468188 37468223 -48227531 + AT_rich Low_complexity Low_complexity 1 35 0 2357 88 0 19 chr15 37469198 37469506 -48226248 - AluSx SINE Alu -10 302 1 23 0 0 0 chr15 37471874 37471897 -48223857 + AT_rich Low_complexity Low_complexity 1 23 0 2282 94 0 0 chr15 37472242 37472530 -48223224 - AluSx SINE Alu -8 304 17 2313 82 7 3 chr15 37473869 37474162 -48221592 - AluSx SINE Alu -18 294 1 1992 112 0 4 chr15 37475534 37475803 -48219951 - AluSg SINE Alu -7 303 36 2231 100 13 7 chr15 37475958 37476257 -48219497 - AluSg SINE Alu -4 306 6 2162 110 4 4 chr15 37476548 37476829 -48218925 + AluSx SINE Alu 1 281 -31 337 135 0 0 chr15 37476933 37477011 -48218743 + Alu SINE Alu 249 326 0 373 305 112 30 chr15 37477157 37477390 -48218364 - MIR SINE MIR -9 253 2 1990 135 7 14 chr15 37477628 37477925 -48217829 - AluSx SINE Alu -12 300 6 1403 144 0 30 chr15 37478273 37478551 -48217203 + AluJo SINE Alu 84 354 0 2166 134 0 0 chr15 37478658 37478957 -48216797 + AluSx SINE Alu 1 299 -13 1548 202 14 11 chr15 37479045 37479327 -48216427 + AluJb SINE Alu 1 283 -29 232 244 166 60 chr15 37479380 37479699 -48216055 - L1ME4a LINE L1 -12 6109 5757 2066 128 17 0 chr15 37479895 37480185 -48215569 + AluJb SINE Alu 1 295 -17 2179 97 0 17 chr15 37480413 37480711 -48215043 - AluSc SINE Alu -16 293 1 2148 127 3 0 chr15 37480711 37481003 -48214751 - AluSx SINE Alu -19 293 1 2432 67 0 10 chr15 37481168 37481466 -48214288 - AluY SINE Alu -14 297 3 249 303 131 33 chr15 37481544 37481666 -48214088 + L2 LINE L2 3134 3267 -5 466 322 137 11 chr15 37482011 37482281 -48213473 + L2 LINE L2 2521 2824 -490 6408 130 12 23 chr15 37483261 37483314 -48212440 - L1MA2 LINE L1 0 6304 6252 2348 76 10 20 chr15 37483314 37483618 -48212136 - AluY SINE Alu -10 301 1 6408 130 12 23 chr15 37483618 37484504 -48211250 - L1MA2 LINE L1 -52 6252 5376 2177 139 0 0 chr15 37484504 37484806 -48210948 - AluSx SINE Alu -10 302 1 6408 130 12 23 chr15 37484806 37484986 -48210768 - L1MA2 LINE L1 -928 5376 5195 2237 101 10 19 chr15 37484986 37485294 -48210460 - AluSx SINE Alu -7 305 1 2529 41 0 41 chr15 37485347 37485664 -48210090 - AluY SINE Alu -7 304 1 26 0 0 0 chr15 37485995 37486021 -48209733 + AT_rich Low_complexity Low_complexity 1 26 0 1802 78 9 0 chr15 37486074 37486305 -48209449 - AluY SINE Alu -7 304 72 2131 134 0 3 chr15 37486479 37486771 -48208983 + AluSx SINE Alu 1 291 -21 429 286 36 7 chr15 37487058 37487198 -48208556 + MIR SINE MIR 79 222 -40 2272 119 3 0 chr15 37488226 37488538 -48207216 + AluSq SINE Alu 1 313 0 290 217 0 0 chr15 37488564 37488610 -48207144 - AluJ/monomer SINE Alu -256 46 1 2194 121 6 10 chr15 37488648 37488961 -48206793 + AluSx SINE Alu 1 312 0 2247 75 0 41 chr15 37488963 37489302 -48206452 + AluY SINE Alu 1 327 0 2201 126 3 3 chr15 37489798 37490108 -48205646 + AluSx SINE Alu 1 310 -2 2043 139 0 0 chr15 37490299 37490614 -48205140 + AluSx SINE Alu 1 315 0 38 0 0 0 chr15 37490807 37490845 -48204909 + AT_rich Low_complexity Low_complexity 1 38 0 2024 141 20 0 chr15 37491050 37491348 -48204406 + AluSx SINE Alu 1 304 -8 2347 103 0 0 chr15 37491518 37491810 -48203944 - AluSx SINE Alu -15 297 6 1679 196 0 10 chr15 37491933 37492234 -48203520 - AluJo SINE Alu -1 311 14 1262 188 4 32 chr15 37492390 37492640 -48203114 - AluJo SINE Alu -69 243 1 21 0 0 0 chr15 37492642 37492663 -48203091 + AT_rich Low_complexity Low_complexity 1 21 0 1590 205 10 13 chr15 37493013 37493320 -48202434 + AluJo SINE Alu 3 308 -4 323 174 112 47 chr15 37493504 37493614 -48202140 + L1MC4 LINE L1 7528 7744 -298 430 107 0 80 chr15 37493621 37493696 -48202058 + AluJ/FRAM SINE Alu 232 300 -12 2277 75 7 4 chr15 37493721 37494002 -48201752 + AluY SINE Alu 1 311 0 262 0 0 0 chr15 37494002 37494031 -48201723 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 439 304 38 116 chr15 37494043 37494276 -48201478 + L2 LINE L2 2805 3055 -258 2251 102 0 0 chr15 37494276 37494560 -48201194 - AluSq SINE Alu -29 284 1 439 304 38 116 chr15 37494560 37494878 -48200876 + L2 LINE L2 3055 3313 0 688 300 0 17 chr15 37495325 37495505 -48200249 - MER5B DNA MER1_type -1 177 1 6664 107 25 11 chr15 37495634 37496590 -48199164 + LTR5 LTR ERVK 1 969 0 23 0 0 0 chr15 37497023 37497046 -48198708 + AT_rich Low_complexity Low_complexity 1 23 0 2285 94 13 0 chr15 37497106 37497404 -48198350 + AluSp SINE Alu 1 302 -11 2348 87 3 7 chr15 37497406 37497706 -48198048 + AluSp SINE Alu 3 301 -12 24 32 0 0 chr15 37498858 37498889 -48196865 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr15 37498889 37498916 -48196838 + (CA)n Simple_repeat Simple_repeat 2 28 0 3593 189 20 14 chr15 37498933 37499343 -48196411 - MER82 DNA MER2_type 0 653 236 1421 151 49 0 chr15 37499343 37499568 -48196186 - MER46A DNA MER2_type 0 236 1 3593 189 20 14 chr15 37499568 37499806 -48195948 - MER82 DNA MER2_type -417 236 1 361 274 29 0 chr15 37500441 37500543 -48195211 - MIR SINE MIR -56 152 48 22 0 0 0 chr15 37500556 37500578 -48195176 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 37500721 37500744 -48195010 + AT_rich Low_complexity Low_complexity 1 23 0 2077 78 74 3 chr15 37501077 37501360 -48194394 + AluY SINE Alu 1 303 -8 557 96 0 0 chr15 37501761 37501834 -48193920 - AluSc SINE Alu -16 293 221 1209 62 0 7 chr15 37501834 37501980 -48193774 - AluSq/x SINE Alu -167 146 2 208 135 0 0 chr15 37502130 37502167 -48193587 + (TTTTTA)n Simple_repeat Simple_repeat 3 39 0 1601 273 119 18 chr15 37502234 37502800 -48192954 - L2 LINE L2 -385 2929 2421 2302 85 0 3 chr15 37502800 37503095 -48192659 + AluY SINE Alu 1 294 -17 1601 273 119 18 chr15 37503095 37503118 -48192636 - L2 LINE L2 -893 2421 2402 369 0 0 0 chr15 37503118 37503159 -48192595 + (TA)n Simple_repeat Simple_repeat 2 42 0 1601 273 119 18 chr15 37503159 37503183 -48192571 - L2 LINE L2 -912 2402 2253 572 222 9 0 chr15 37503185 37503293 -48192461 + MER3 DNA MER1_type 1 109 -100 1369 138 9 18 chr15 37503298 37503523 -48192231 + AluJb SINE Alu 64 286 -26 456 19 0 0 chr15 37503525 37503578 -48192176 + (TG)n Simple_repeat Simple_repeat 2 54 0 482 151 65 0 chr15 37503578 37503671 -48192083 + MER3 DNA MER1_type 110 208 -1 295 216 0 0 chr15 37503627 37503678 -48192076 - MER3 DNA MER1_type -117 92 42 * 1072 257 143 0 chr15 37503679 37504037 -48191717 - L2 LINE L2 -1063 2251 1843 2026 161 46 23 chr15 37504042 37504228 -48191526 + L1MB8 LINE L1 5512 5692 -492 2231 117 0 0 chr15 37504228 37504527 -48191227 + AluSg SINE Alu 1 299 -11 2026 161 46 23 chr15 37504527 37504732 -48191022 + L1MB8 LINE L1 5692 5912 -272 1052 174 25 25 chr15 37504732 37504928 -48190826 + AluJo SINE Alu 106 301 -11 1274 137 11 99 chr15 37504928 37505077 -48190677 + L1MB8 LINE L1 5934 6052 -126 1844 127 14 14 chr15 37505077 37505391 -48190363 + AluSx SINE Alu 6 312 0 1274 137 11 99 chr15 37505391 37505503 -48190251 + L1MB8 LINE L1 6052 6172 -6 2509 260 157 36 chr15 37505547 37506261 -48189493 - L2 LINE L2 -1755 1559 933 342 0 0 0 chr15 37506261 37506299 -48189455 + (TG)n Simple_repeat Simple_repeat 2 39 0 2509 260 157 36 chr15 37506299 37506755 -48188999 - L2 LINE L2 -2381 933 247 219 229 73 42 chr15 37506759 37506808 -48188946 - L2 LINE L2 -1074 2240 2194 2100 55 48 4 chr15 37506808 37507105 -48188649 + AluY SINE Alu 1 309 0 219 229 73 42 chr15 37507105 37507150 -48188604 - L2 LINE L2 -1120 2194 2142 297 0 0 0 chr15 37508656 37508689 -48187065 + (TA)n Simple_repeat Simple_repeat 1 33 0 279 0 0 0 chr15 37508688 37508719 -48187035 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 3569 191 20 14 chr15 37508736 37509146 -48186608 - MER82 DNA MER2_type 0 653 236 1400 156 49 0 chr15 37509146 37509371 -48186383 - MER46A DNA MER2_type 0 236 1 3569 191 20 14 chr15 37509371 37509609 -48186145 - MER82 DNA MER2_type -417 236 1 207 323 0 0 chr15 37510842 37510907 -48184847 + T-rich Low_complexity Low_complexity 1 65 0 484 137 0 0 chr15 37511173 37511246 -48184508 - AluSc SINE Alu -16 293 221 1202 68 0 7 chr15 37511246 37511393 -48184361 - AluSq/x SINE Alu -167 146 1 2452 214 82 40 chr15 37511406 37511592 -48184162 + L1MC4 LINE L1 6837 7014 -1028 1998 82 45 4 chr15 37511592 37511859 -48183895 + AluY SINE Alu 1 278 -33 2452 214 82 40 chr15 37511859 37512405 -48183349 + L1MC4 LINE L1 7014 7600 -442 438 169 0 0 chr15 37512408 37512497 -48183257 + GA-rich Low_complexity Low_complexity 4 92 0 935 263 65 54 chr15 37512498 37512815 -48182939 + L1MC4 LINE L1 7589 7914 -128 2337 106 3 0 chr15 37512815 37513118 -48182636 + AluSp SINE Alu 1 304 -9 935 263 65 54 chr15 37513118 37513248 -48182506 + L1MC4 LINE L1 7914 8041 -1 27 0 0 0 chr15 37513276 37513303 -48182451 + AT_rich Low_complexity Low_complexity 1 27 0 239 137 59 39 chr15 37513319 37513370 -48182384 + L2 LINE L2 3262 3313 0 1861 134 3 30 chr15 37513438 37513781 -48181973 + AluSx SINE Alu 1 312 0 2306 104 7 0 chr15 37514376 37514674 -48181080 + AluSx SINE Alu 1 300 -12 1617 150 51 15 chr15 37515652 37515954 -48179800 - AluJo SINE Alu 0 312 1 1461 90 76 9 chr15 37516006 37516217 -48179537 + AluSp SINE Alu 85 309 -4 2105 127 7 13 chr15 37517071 37517378 -48178376 - AluSx SINE Alu -7 305 1 21 71 0 0 chr15 37517705 37517747 -48178007 + AT_rich Low_complexity Low_complexity 1 42 0 41 0 0 0 chr15 37518373 37518414 -48177340 + AT_rich Low_complexity Low_complexity 1 41 0 265 219 14 14 chr15 37518462 37518535 -48177219 - Charlie7 DNA MER1_type -2503 109 37 252 167 0 0 chr15 37518675 37518717 -48177037 + MER5B DNA MER1_type 135 176 -2 1348 89 0 0 chr15 37518885 37519053 -48176701 - AluSg/x SINE Alu -13 297 130 243 0 0 0 chr15 37519053 37519080 -48176674 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2015 135 3 0 chr15 37519080 37519362 -48176392 - AluSx SINE Alu -29 283 1 732 211 0 8 chr15 37519699 37519832 -48175922 + AluJo SINE Alu 2 133 -169 271 105 0 0 chr15 37519866 37519904 -48175850 - Alu SINE Alu -32 269 232 1708 182 4 0 chr15 37519904 37520179 -48175575 - AluJb SINE Alu -36 276 1 984 183 12 0 chr15 37520200 37520364 -48175390 + AluJo SINE Alu 132 297 -15 1927 121 48 7 chr15 37520405 37520694 -48175060 + AluSq SINE Alu 1 301 -12 1642 198 11 0 chr15 37520790 37521068 -48174686 + AluJo SINE Alu 1 281 -31 310 252 77 97 chr15 37521085 37521240 -48174514 - L2 LINE L2 -1 3312 3161 1388 249 79 67 chr15 37521240 37521599 -48174155 - L1ME3 LINE L1 -300 5871 5518 2394 74 13 0 chr15 37521599 37521898 -48173856 - AluSx SINE Alu -5 307 5 1388 249 79 67 chr15 37521898 37522381 -48173373 - L1ME3 LINE L1 -653 5518 5014 977 186 13 0 chr15 37522381 37522537 -48173217 - FAM SINE Alu -17 158 1 1388 249 79 67 chr15 37522537 37522672 -48173082 - L1ME3 LINE L1 -1157 5014 4882 966 192 29 0 chr15 37522775 37522947 -48172807 + FRAM SINE Alu 1 176 0 278 240 306 8 chr15 37523240 37523361 -48172393 - L2 LINE L2 -3 3310 3154 2327 95 10 0 chr15 37523368 37523672 -48172082 + AluSc SINE Alu 1 307 -2 1993 140 10 0 chr15 37523698 37524005 -48171749 + AluJb SINE Alu 1 310 -2 4374 179 67 47 chr15 37524119 37524405 -48171349 + L1MD1 LINE L1 4872 5151 -1091 753 154 0 84 chr15 37524405 37524548 -48171206 + FLAM_C SINE Alu 3 133 0 4374 179 67 47 chr15 37524548 37524675 -48171079 + L1MD1 LINE L1 5151 5274 -968 1805 167 30 0 chr15 37524675 37524975 -48170779 + AluJo SINE Alu 1 309 -3 4374 179 67 47 chr15 37524975 37525113 -48170641 + L1MD1 LINE L1 5274 5408 -834 2125 122 3 13 chr15 37525113 37525424 -48170330 + AluSq SINE Alu 1 308 -5 4374 179 67 47 chr15 37525424 37525618 -48170136 + L1MD1 LINE L1 5408 5597 -645 824 162 0 0 chr15 37525618 37525769 -48169985 + FLAM_A SINE Alu 4 154 0 4374 179 67 47 chr15 37525769 37525853 -48169901 + L1MD1 LINE L1 5597 5678 -564 2039 133 0 3 chr15 37525853 37526138 -48169616 - AluSx SINE Alu -27 285 2 4374 179 67 47 chr15 37526138 37526462 -48169292 + L1MD1 LINE L1 5678 5994 -248 1825 171 7 0 chr15 37526462 37526774 -48168980 - AluJb SINE Alu 0 314 1 4374 179 67 47 chr15 37526774 37526886 -48168868 + L1MD1 LINE L1 5994 6102 -140 2177 126 0 3 chr15 37526886 37527195 -48168559 - AluSg SINE Alu 0 310 3 4374 179 67 47 chr15 37527195 37527268 -48168486 + L1MD1 LINE L1 6102 6242 0 1609 268 81 8 chr15 37527520 37527991 -48167763 + LTR33 LTR ERVL 9 513 -8 1475 268 81 49 chr15 37528163 37528692 -48167062 + MER77 LTR ERV1 54 599 -6 460 219 46 46 chr15 37529231 37529322 -48166432 - L2 LINE L2 -4 3309 3216 1769 139 12 0 chr15 37529322 37529580 -48166174 + AluSx SINE Alu 47 307 -5 460 219 46 46 chr15 37529580 37529639 -48166115 - L2 LINE L2 -96 3217 3159 1976 162 54 8 chr15 37529780 37530143 -48165611 + L1MB2 LINE L1 5648 6032 -139 1735 176 7 7 chr15 37530143 37530421 -48165333 - AluJo SINE Alu -33 279 2 1976 162 54 8 chr15 37530421 37530446 -48165308 + L1MB2 LINE L1 6032 6054 -117 2468 84 0 0 chr15 37530448 37530756 -48164998 + AluY SINE Alu 1 308 -3 2611 153 38 25 chr15 37530797 37531274 -48164480 + L1MC1 LINE L1 5814 6296 -37 240 167 0 0 chr15 37531284 37531332 -48164422 + GA-rich Low_complexity Low_complexity 4 51 0 396 298 152 47 chr15 37531364 37531622 -48164132 - L2 LINE L2 -249 3064 2782 2456 48 0 29 chr15 37531689 37532001 -48163753 + AluY SINE Alu 1 303 -8 202 359 0 0 chr15 37532100 37532164 -48163590 - L2 LINE L2 -8 3264 3201 870 195 0 0 chr15 37532841 37533000 -48162754 + FRAM SINE Alu 9 167 -9 1006 199 80 12 chr15 37533003 37533254 -48162500 + AluSx SINE Alu 6 273 -39 475 428 0 0 chr15 37533303 37533483 -48162271 + G-rich Low_complexity Low_complexity 1 180 0 1278 113 16 0 chr15 37533584 37533770 -48161984 - AluY SINE Alu -122 189 1 31 44 0 0 chr15 37534013 37534058 -48161696 + AT_rich Low_complexity Low_complexity 1 45 0 674 247 0 27 chr15 37534572 37534718 -48161036 - FLAM_A SINE Alu 0 142 1 2031 140 10 3 chr15 37534729 37535037 -48160717 - AluJb SINE Alu 0 312 3 2017 63 0 73 chr15 37535451 37535738 -48160016 - AluY SINE Alu -45 266 1 1888 164 3 0 chr15 37535743 37536030 -48159724 - AluSx SINE Alu -24 288 1 2178 120 0 10 chr15 37536072 37536380 -48159374 - AluSc SINE Alu -4 305 1 633 188 87 29 chr15 37536978 37537116 -48158638 + MER58C DNA MER1_type 62 207 -8 255 248 108 6 chr15 37537295 37537452 -48158302 - L1ME4a LINE L1 0 6121 5949 2035 75 86 0 chr15 37537647 37537915 -48157839 + AluSq SINE Alu 1 291 -22 338 180 60 30 chr15 37538164 37538264 -48157490 - 7SLRNA srpRNA srpRNA 0 320 238 2209 125 0 0 chr15 37538291 37538588 -48157166 + AluSx SINE Alu 1 297 -15 1183 143 0 6 chr15 37538711 37538879 -48156875 - AluJb SINE Alu -13 299 133 21 57 0 0 chr15 37539519 37539554 -48156200 + AT_rich Low_complexity Low_complexity 1 35 0 2509 42 0 39 chr15 37539968 37540276 -48155478 - AluY SINE Alu -15 296 1 2235 118 0 0 chr15 37540807 37541103 -48154651 + AluSq SINE Alu 2 297 -16 2007 142 0 32 chr15 37541139 37541455 -48154299 + AluSg SINE Alu 3 308 -2 208 191 0 43 chr15 37541587 37541634 -48154120 + MIR SINE MIR 102 146 -62 1356 125 88 78 chr15 37541925 37542036 -48153718 - MER33 DNA MER1_type -2262 323 215 1776 190 0 3 chr15 37542036 37542336 -48153418 - AluJb SINE Alu -12 300 2 1356 125 88 78 chr15 37542336 37542544 -48153210 - MER33 DNA MER1_type -2370 215 1 2084 125 7 0 chr15 37542739 37543035 -48152719 + AluSx SINE Alu 1 298 -14 242 282 183 34 chr15 37543365 37543688 -48152066 + L2 LINE L2 1710 2080 -1234 1844 127 14 14 chr15 37544214 37544227 -48151527 - AluSx SINE Alu 0 312 300 196 42 0 0 chr15 37544227 37544251 -48151503 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1844 127 14 14 chr15 37544251 37544528 -48151226 - AluSx SINE Alu -11 301 6 816 124 0 48 chr15 37544532 37544677 -48151077 - L1MB8 LINE L1 -107 6071 5934 1052 174 25 25 chr15 37544677 37544873 -48150881 - AluJo SINE Alu -11 301 106 2026 161 46 23 chr15 37544873 37545078 -48150676 - L1MB8 LINE L1 -272 5912 5713 2231 117 0 0 chr15 37545078 37545377 -48150377 - AluSg SINE Alu -11 299 1 2026 161 46 23 chr15 37545377 37545563 -48150191 - L1MB8 LINE L1 -471 5713 5512 1072 257 143 0 chr15 37545568 37545926 -48149828 + L2 LINE L2 1843 2251 -1063 454 161 65 0 chr15 37545934 37546027 -48149727 - MER3 DNA MER1_type -1 208 110 546 16 0 0 chr15 37546027 37546090 -48149664 + (CA)n Simple_repeat Simple_repeat 2 64 0 1369 138 9 18 chr15 37546092 37546317 -48149437 - AluJb SINE Alu -26 286 64 572 222 9 0 chr15 37546322 37546430 -48149324 - MER3 DNA MER1_type -100 109 1 1601 273 119 18 chr15 37546432 37546456 -48149298 + L2 LINE L2 2253 2273 -1041 441 0 0 0 chr15 37546456 37546505 -48149249 + (TA)n Simple_repeat Simple_repeat 1 49 0 1601 273 119 18 chr15 37546505 37546528 -48149226 + L2 LINE L2 2273 2292 -1022 2293 85 0 3 chr15 37546528 37546822 -48148932 - AluY SINE Alu -18 293 1 1601 273 119 18 chr15 37546822 37547388 -48148366 + L2 LINE L2 2292 2929 -385 208 135 0 0 chr15 37547455 37547492 -48148262 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 2001 129 3 39 chr15 37547642 37547775 -48147979 + AluJb SINE Alu 2 138 -174 2377 90 3 6 chr15 37547775 37548087 -48147667 + AluSp SINE Alu 3 313 0 2001 129 3 39 chr15 37548087 37548263 -48147491 + AluJb SINE Alu 138 300 -12 2341 75 0 3 chr15 37548369 37548664 -48147090 - AluY SINE Alu -17 294 1 25 0 0 50 chr15 37548676 37548697 -48147057 + AT_rich Low_complexity Low_complexity 1 21 -17 2114 136 0 7 chr15 37548697 37548992 -48146762 - AluSx SINE Alu -19 293 1 25 0 0 50 chr15 37548992 37549010 -48146744 + AT_rich Low_complexity Low_complexity 21 38 0 363 257 0 0 chr15 37549317 37549391 -48146363 - MER5C DNA MER1_type -250 74 1 2281 91 3 3 chr15 37549965 37550263 -48145491 - AluY SINE Alu -13 298 1 346 40 40 0 chr15 37550295 37550345 -48145409 - MADE1 DNA Mariner 0 80 29 821 117 0 0 chr15 37550425 37550536 -48145218 + AluSq/x SINE Alu 1 111 -202 294 73 0 0 chr15 37550554 37550595 -48145159 + (A)n Simple_repeat Simple_repeat 1 41 0 2074 138 0 0 chr15 37550597 37550893 -48144861 + AluSq SINE Alu 1 296 -17 303 289 9 70 chr15 37550912 37551026 -48144728 + L1ME3A LINE L1 5955 6061 -109 511 75 11 85 chr15 37551741 37551757 -48143997 - L1MC2 LINE L1 0 6344 6328 1870 131 32 7 chr15 37551757 37552040 -48143714 + AluSx SINE Alu 1 290 -22 511 75 11 85 chr15 37552040 37552117 -48143637 - L1MC2 LINE L1 -16 6328 6258 944 183 10 45 chr15 37552144 37552346 -48143408 + MER58A DNA MER1_type 30 224 0 231 36 0 0 chr15 37552564 37552592 -48143162 + (T)n Simple_repeat Simple_repeat 1 28 0 1756 177 0 46 chr15 37552793 37553120 -48142634 + AluJo SINE Alu 1 312 0 1839 149 7 10 chr15 37553396 37553684 -48142070 - AluJb SINE Alu -25 287 1 1268 163 40 83 chr15 37553797 37554074 -48141680 - AluJb SINE Alu -45 267 3 1897 161 3 3 chr15 37554507 37554817 -48140937 + AluSq SINE Alu 1 310 -3 254 247 153 0 chr15 37554879 37554964 -48140790 - MIR SINE MIR -77 185 88 2364 95 0 0 chr15 37555802 37556106 -48139648 - AluSg1 SINE Alu -5 304 1 2150 113 0 7 chr15 37556378 37556670 -48139084 + AluSq SINE Alu 5 294 -19 325 250 60 0 chr15 37556811 37556895 -48138859 - L2 LINE L2 -661 2653 2565 274 306 7 69 chr15 37557266 37557302 -48138452 + MIR SINE MIR 88 125 -137 2330 76 13 3 chr15 37557302 37557603 -48138151 - AluSp SINE Alu -9 304 1 274 306 7 69 chr15 37557603 37557710 -48138044 + MIR SINE MIR 125 222 -40 1655 166 13 45 chr15 37558531 37558664 -48137090 + AluJb SINE Alu 1 137 -175 1530 127 193 8 chr15 37558664 37558923 -48136831 + AluSg1 SINE Alu 1 307 -2 1655 166 13 45 chr15 37558923 37559102 -48136652 + AluJb SINE Alu 137 303 -9 472 167 0 0 chr15 37559867 37559945 -48135809 + FLAM_C SINE Alu 65 142 -1 21 0 0 0 chr15 37560079 37560100 -48135654 + AT_rich Low_complexity Low_complexity 1 21 0 924 143 0 0 chr15 37560101 37560234 -48135520 - FLAM_C SINE Alu 0 133 1 835 163 0 8 chr15 37560857 37560986 -48134768 - FLAM_C SINE Alu -5 128 1 1822 96 12 8 chr15 37561617 37561866 -48133888 + AluSx SINE Alu 52 301 -11 719 153 29 0 chr15 37562383 37562520 -48133234 - Charlie1 DNA MER1_type -1 2760 2620 * 924 139 64 0 chr15 37562504 37562676 -48133078 - Charlie1 DNA MER1_type -2522 239 57 384 348 118 45 chr15 37562945 37563215 -48132539 + L2 LINE L2 2912 3210 -62 2492 71 0 3 chr15 37563215 37563525 -48132229 - AluSq SINE Alu -4 309 1 384 348 118 45 chr15 37563525 37563567 -48132187 + L2 LINE L2 3210 3247 -25 723 150 7 116 chr15 37564426 37564573 -48131181 - FLAM_A SINE Alu -1 132 2 739 181 0 0 chr15 37566026 37566142 -48129612 + AluJo/FLAM SINE Alu 1 116 -186 1037 91 0 0 chr15 37566143 37566275 -48129479 + AluSg/x SINE Alu 170 301 -9 239 322 43 9 chr15 37566278 37566393 -48129361 + L1MC4 LINE L1 7763 7881 -161 1089 288 44 31 chr15 37566526 37566981 -48128773 + L1MEc LINE L1 173 633 -5763 1900 149 7 3 chr15 37566988 37567292 -48128462 + AluJo SINE Alu 3 307 0 23 54 0 0 chr15 37567294 37567331 -48128423 + AT_rich Low_complexity Low_complexity 1 37 0 1415 174 38 55 chr15 37567331 37567624 -48128130 + AluJo SINE Alu 6 293 -19 1078 259 87 82 chr15 37567638 37568398 -48127356 + L1MEc LINE L1 1379 2145 -4251 1908 113 0 0 chr15 37568398 37568654 -48127100 + AluSq SINE Alu 39 294 -19 1078 259 87 82 chr15 37568654 37568674 -48127080 + L1MEc LINE L1 2145 2163 -4233 325 250 60 0 chr15 37568795 37568879 -48126875 - L2 LINE L2 -661 2653 2565 274 306 7 69 chr15 37569250 37569286 -48126468 + MIR SINE MIR 88 125 -137 2317 80 13 3 chr15 37569286 37569587 -48126167 - AluSp SINE Alu -9 304 1 274 306 7 69 chr15 37569587 37569694 -48126060 + MIR SINE MIR 125 222 -40 1626 166 13 45 chr15 37570515 37570648 -48125106 + AluJb SINE Alu 1 137 -175 1547 127 192 8 chr15 37570648 37570908 -48124846 + AluSg1 SINE Alu 1 308 -1 1626 166 13 45 chr15 37570908 37571087 -48124667 + AluJb SINE Alu 137 303 -9 472 167 0 0 chr15 37571852 37571930 -48123824 + FLAM_A SINE Alu 64 141 -1 21 0 0 0 chr15 37572064 37572085 -48123669 + AT_rich Low_complexity Low_complexity 1 21 0 904 150 0 0 chr15 37572086 37572219 -48123535 - FLAM_C SINE Alu 0 133 1 845 161 0 8 chr15 37572842 37572972 -48122782 - FLAM_C SINE Alu -4 129 1 1822 96 12 8 chr15 37573601 37573850 -48121904 + AluSx SINE Alu 52 301 -11 719 153 29 0 chr15 37574367 37574504 -48121250 - Charlie1 DNA MER1_type -1 2760 2620 * 924 139 64 0 chr15 37574488 37574660 -48121094 - Charlie1 DNA MER1_type -2522 239 57 384 348 118 45 chr15 37574929 37575199 -48120555 + L2 LINE L2 2912 3210 -62 2492 71 0 3 chr15 37575199 37575509 -48120245 - AluSq SINE Alu -4 309 1 384 348 118 45 chr15 37575509 37575551 -48120203 + L2 LINE L2 3210 3247 -25 723 150 7 116 chr15 37576409 37576556 -48119198 - FLAM_A SINE Alu -1 132 2 30 0 0 0 chr15 37578630 37578660 -48117094 + GC_rich Low_complexity Low_complexity 1 30 0 218 317 125 10 chr15 37579531 37579635 -48116119 - L2 LINE L2 0 3313 3198 1428 68 0 0 chr15 37579694 37579871 -48115883 - AluSg/x SINE Alu -2 308 132 2494 53 3 0 chr15 37579871 37580172 -48115582 - AluY SINE Alu -9 302 1 1827 97 0 31 chr15 37580255 37580514 -48115240 - AluSg SINE Alu -4 306 56 4180 168 56 64 chr15 37580544 37581506 -48114248 - LTR13 LTR ERVK 0 954 1 2192 114 3 3 chr15 37581753 37582052 -48113702 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr15 37582573 37582595 -48113159 + AT_rich Low_complexity Low_complexity 1 22 0 1638 185 43 0 chr15 37582595 37582876 -48112878 - AluJb SINE Alu -19 293 1 935 200 29 0 chr15 37583037 37583207 -48112547 - FAM SINE Alu 0 175 1 894 207 13 0 chr15 37583289 37583439 -48112315 + FRAM SINE Alu 1 152 -14 1832 263 105 60 chr15 37583478 37584032 -48111722 - HAL1 LINE L1 -210 2297 1770 1486 196 13 36 chr15 37584032 37584333 -48111421 - AluJo SINE Alu -18 294 1 1832 263 105 60 chr15 37584333 37584345 -48111409 - HAL1 LINE L1 -737 1770 1760 2244 120 0 0 chr15 37584345 37584654 -48111100 - AluSc SINE Alu 0 309 1 2138 130 0 0 chr15 37584654 37584946 -48110808 - AluSg1 SINE Alu -17 292 1 1832 263 105 60 chr15 37584946 37585386 -48110368 - HAL1 LINE L1 -746 1761 1243 2341 110 3 0 chr15 37585887 37586197 -48109557 - AluSp SINE Alu -2 311 1 669 256 128 0 chr15 37587221 37587385 -48108369 + MER5A DNA MER1_type 4 188 -1 450 0 0 0 chr15 37587549 37587599 -48108155 + (TG)n Simple_repeat Simple_repeat 2 51 0 1483 164 109 4 chr15 37587767 37588055 -48107699 - AluJo SINE Alu 0 315 1 284 173 0 0 chr15 37588140 37588192 -48107562 + HsTC2 DNA Tc2 1845 1896 -2 333 336 33 16 chr15 37588287 37588409 -48107345 - MER5A DNA MER1_type 0 189 66 1208 180 19 0 chr15 37588411 37588622 -48107132 - AluJo SINE Alu -13 299 85 243 195 58 126 chr15 37588935 37589022 -48106732 + MIR SINE MIR 60 140 -122 1423 162 5 0 chr15 37589036 37589252 -48106502 + U3 snRNA snRNA 1 217 0 25 51 0 0 chr15 37589353 37589392 -48106362 + AT_rich Low_complexity Low_complexity 1 39 0 2133 108 7 17 chr15 37589557 37589718 -48106036 - AluSq SINE Alu -19 294 136 2069 117 7 36 chr15 37589718 37590027 -48105727 - AluSq SINE Alu -13 300 1 2133 108 7 17 chr15 37590027 37590162 -48105592 - AluSq SINE Alu -177 136 1 316 279 96 0 chr15 37590868 37590972 -48104782 + MIR SINE MIR 116 229 -33 182 200 0 0 chr15 37591018 37591058 -48104696 + L2 LINE L2 3274 3313 0 403 311 50 6 chr15 37591353 37591514 -48104240 - Charlie8 DNA MER1_type -2179 238 71 1483 158 39 49 chr15 37591524 37591808 -48103946 + AluJo SINE Alu 1 281 -31 1740 146 0 68 chr15 37592069 37592270 -48103484 - AluJo SINE Alu -13 299 86 2077 147 0 0 chr15 37592270 37592570 -48103184 + AluSx SINE Alu 1 300 -12 2000 137 3 19 chr15 37592570 37592885 -48102869 + AluSx SINE Alu 1 310 -2 1740 146 0 68 chr15 37592885 37593003 -48102751 - AluJo SINE Alu -224 88 1 184 347 40 0 chr15 37593140 37593215 -48102539 - L2 LINE L2 -299 2973 2896 333 286 41 20 chr15 37593233 37593331 -48102423 + MIR SINE MIR 8 107 -155 2133 108 0 20 chr15 37593639 37593945 -48101809 + AluSx SINE Alu 1 300 -12 2354 85 3 13 chr15 37594241 37594548 -48101206 - AluSp SINE Alu -9 304 1 343 259 31 37 chr15 37594750 37594912 -48100842 - L2 LINE L2 -871 2443 2283 686 280 31 36 chr15 37594914 37595139 -48100615 - MIR SINE MIR 0 262 39 256 341 47 0 chr15 37595178 37595263 -48100491 - L2 LINE L2 -38 3234 3146 233 317 80 64 chr15 37595294 37595669 -48100085 - L2 LINE L2 -1140 2174 1794 751 171 0 23 chr15 37595879 37596008 -48099746 - FLAM_C SINE Alu -5 128 3 496 232 17 90 chr15 37596506 37596594 -48099160 - MIR SINE MIR -59 203 133 1873 147 6 13 chr15 37596594 37596906 -48098848 + AluJb SINE Alu 1 310 -2 496 232 17 90 chr15 37596906 37596994 -48098760 - MIR SINE MIR -129 133 40 1059 215 5 9 chr15 37597195 37597371 -48098383 - AluJb SINE Alu -15 297 121 198 0 0 0 chr15 37597371 37597393 -48098361 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1059 215 5 9 chr15 37597393 37597430 -48098324 - AluJb SINE Alu -191 121 85 723 77 0 0 chr15 37597430 37597521 -48098233 - AluSg/x SINE Alu -62 248 158 347 113 0 0 chr15 37597522 37597575 -48098179 - AluSg/x SINE Alu -113 187 135 1990 99 35 0 chr15 37597575 37597859 -48097895 - AluSx SINE Alu -18 294 1 29 28 0 0 chr15 37597859 37597895 -48097859 + AT_rich Low_complexity Low_complexity 1 36 0 2288 85 7 3 chr15 37598352 37598647 -48097107 + AluSp SINE Alu 1 296 -17 784 154 64 19 chr15 37598740 37598896 -48096858 + FRAM SINE Alu 1 163 -3 216 0 0 0 chr15 37598902 37598926 -48096828 + (CA)n Simple_repeat Simple_repeat 2 25 0 470 167 11 11 chr15 37598943 37599033 -48096721 + FRAM SINE Alu 74 163 -13 264 59 0 0 chr15 37599039 37599073 -48096681 + (CA)n Simple_repeat Simple_repeat 2 35 0 285 241 60 0 chr15 37599903 37599986 -48095768 + GA-rich Low_complexity Low_complexity 3 90 0 192 77 0 0 chr15 37600155 37600181 -48095573 + (CGG)n Simple_repeat Simple_repeat 2 27 0 22 70 0 0 chr15 37600256 37600299 -48095455 + GC_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr15 37602543 37602570 -48093184 + AT_rich Low_complexity Low_complexity 1 27 0 27 49 0 0 chr15 37602933 37602974 -48092780 + AT_rich Low_complexity Low_complexity 1 41 0 656 195 0 0 chr15 37602975 37603093 -48092661 - FLAM_C SINE Alu -15 118 1 598 243 70 84 chr15 37603721 37604005 -48091749 + MER102a DNA MER1_type 33 312 -18 2354 88 0 0 chr15 37604527 37604821 -48090933 - AluSx SINE Alu -18 294 1 776 176 0 0 chr15 37604875 37604994 -48090760 - FLAM_C SINE Alu -24 119 1 2347 80 0 10 chr15 37605814 37606114 -48089640 + AluSq SINE Alu 1 297 -16 1268 179 5 5 chr15 37606638 37606861 -48088893 - AluJb SINE Alu -4 308 86 363 211 0 0 chr15 37607291 37607362 -48088392 + Tigger5 DNA MER2_type 18 88 -2235 23 0 0 0 chr15 37608734 37608757 -48086997 + AT_rich Low_complexity Low_complexity 1 23 0 722 199 0 15 chr15 37609014 37609150 -48086604 + AluJo SINE Alu 1 134 -178 1926 146 13 0 chr15 37609287 37609588 -48086166 - AluSx SINE Alu -7 305 1 198 336 84 0 chr15 37609641 37609748 -48086006 + L2 LINE L2 3186 3301 -12 22 35 0 0 chr15 37610139 37610168 -48085586 + AT_rich Low_complexity Low_complexity 1 29 0 2187 72 0 38 chr15 37610173 37610494 -48085260 - AluY SINE Alu 0 310 1 450 266 101 45 chr15 37612035 37612244 -48083510 - MIR SINE MIR -1 261 45 560 135 0 87 chr15 37612768 37612872 -48082882 - AluJb SINE Alu -194 118 24 322 244 131 48 chr15 37612974 37613203 -48082551 - L1MC4 LINE L1 0 8042 7795 1865 168 30 0 chr15 37613975 37614308 -48081446 - MER2 DNA MER2_type 0 344 2 1414 142 0 22 chr15 37614984 37615216 -48080538 - AluJb SINE Alu 0 312 86 503 257 170 14 chr15 37615284 37615502 -48080252 + MIR SINE MIR 10 261 -1 21 0 0 0 chr15 37615785 37615806 -48079948 + AT_rich Low_complexity Low_complexity 1 21 0 323 310 77 19 chr15 37615806 37615961 -48079793 + L1M4 LINE L1 4033 4196 -1950 484 136 262 0 chr15 37616072 37616175 -48079579 + MER2 DNA MER2_type 7 136 -209 2301 107 0 3 chr15 37616993 37617293 -48078461 - AluSx SINE Alu -13 299 1 1799 163 0 29 chr15 37618076 37618382 -48077372 - AluJb SINE Alu -15 297 1 394 249 94 42 chr15 37618382 37618595 -48077159 + MER2 DNA MER2_type 121 344 -1 1842 180 154 48 chr15 37618596 37619095 -48076659 - MLT2B3 LTR ERVL -2 552 1 461 238 164 0 chr15 37619298 37619420 -48076334 - MER58A DNA MER1_type 0 143 2 798 154 89 134 chr15 37619577 37619735 -48076019 - MER46A DNA MER2_type -2495 236 91 2021 125 16 0 chr15 37619735 37620039 -48075715 - AluSx SINE Alu -3 309 1 798 154 89 134 chr15 37620039 37620127 -48075627 - MER46A DNA MER2_type -2640 91 1 376 254 127 36 chr15 37620174 37620339 -48075415 - MER5A DNA MER1_type 0 189 10 868 130 0 43 chr15 37620506 37620644 -48075110 - FLAM_C SINE Alu 0 133 2 692 164 30 45 chr15 37621125 37621259 -48074495 - FLAM_C SINE Alu -1 132 1 23 0 0 0 chr15 37621261 37621284 -48074470 + AT_rich Low_complexity Low_complexity 1 23 0 593 187 52 19 chr15 37621293 37621448 -48074306 - L1ME1 LINE L1 -5 6161 6002 * 980 176 90 4 chr15 37621441 37621686 -48074068 - L1MDa LINE L1 -3205 3335 3070 603 256 143 19 chr15 37621708 37622079 -48073675 - L1MDa LINE L1 -3529 3011 2595 1317 195 10 55 chr15 37622104 37622230 -48073524 + AluJo SINE Alu 16 146 -166 2239 118 3 13 chr15 37622230 37622544 -48073210 + AluSx SINE Alu 1 311 -1 1317 195 10 55 chr15 37622544 37622709 -48073045 + AluJo SINE Alu 146 294 -18 237 229 0 0 chr15 37622755 37622803 -48072951 + CT-rich Low_complexity Low_complexity 2 49 0 318 50 0 0 chr15 37622803 37622843 -48072911 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 801 231 13 6 chr15 37622846 37623002 -48072752 - FAM SINE Alu -18 157 1 1167 255 77 63 chr15 37623004 37623128 -48072626 - L1MDa LINE L1 -4126 2595 2474 1777 131 0 11 chr15 37623128 37623402 -48072352 - AluSx SINE Alu -3 309 39 1167 255 77 63 chr15 37623402 37624147 -48071607 - L1MDa LINE L1 -4247 2474 1669 27 0 0 0 chr15 37624149 37624176 -48071578 + AT_rich Low_complexity Low_complexity 1 27 0 1443 178 38 55 chr15 37624176 37624469 -48071285 - AluJo SINE Alu -19 293 6 23 54 0 0 chr15 37624469 37624506 -48071248 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr15 37624508 37624528 -48071226 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1909 149 7 3 chr15 37624530 37624812 -48070942 - AluJo SINE Alu -27 285 3 941 292 44 31 chr15 37624819 37625274 -48070480 - L1MDa LINE L1 -5763 958 498 1040 91 0 0 chr15 37625525 37625657 -48070097 - AluSg/x SINE Alu -9 303 172 721 172 0 0 chr15 37625658 37625774 -48069980 - AluJo/FLAM SINE Alu -186 116 1 2060 104 0 61 chr15 37625993 37626320 -48069434 - AluSq SINE Alu -6 307 1 2110 141 0 3 chr15 37626691 37626997 -48068757 + AluJb SINE Alu 1 305 -7 513 196 60 60 chr15 37627005 37627138 -48068616 + MER63A DNA MER1_type 60 192 -18 1396 149 20 143 chr15 37627172 37627351 -48068403 - AluJo SINE Alu -1 301 102 2147 124 0 6 chr15 37627351 37627666 -48068088 - AluSq SINE Alu 0 313 1 1396 149 20 143 chr15 37627666 37627685 -48068069 - AluJo SINE Alu -200 102 82 2111 133 0 0 chr15 37627685 37627978 -48067776 - AluSq SINE Alu -20 293 1 1396 149 20 143 chr15 37627978 37628121 -48067633 - AluJo SINE Alu -220 82 1 2241 85 0 3 chr15 37629023 37629354 -48066400 + AluY SINE Alu 1 330 0 295 192 100 108 chr15 37629559 37629679 -48066075 - MIR SINE MIR -96 166 48 366 314 45 70 chr15 37629792 37629991 -48065763 - MIR SINE MIR -13 249 56 561 178 8 0 chr15 37629991 37630109 -48065645 - L1MB2 LINE L1 0 6171 6053 366 314 45 70 chr15 37630109 37630151 -48065603 - MIR SINE MIR -206 56 14 1926 236 45 26 chr15 37630306 37630384 -48065370 + L1MEc LINE L1 53 128 -6268 2292 111 0 0 chr15 37630384 37630681 -48065073 - AluSq SINE Alu -15 298 2 1926 236 45 26 chr15 37630681 37631186 -48064568 + L1MEc LINE L1 128 647 -5749 1002 252 93 3 chr15 37631174 37631527 -48064227 + L1M4 LINE L1 3567 3951 -2195 * 788 189 0 0 chr15 37631529 37631709 -48064045 - FLAM_C SINE Alu 0 180 1 335 216 0 0 chr15 37631722 37631796 -48063958 + L1M4 LINE L1 3959 4032 -2114 425 265 103 15 chr15 37632645 37632781 -48062973 - MIR SINE MIR -23 239 92 2164 117 24 0 chr15 37634295 37634585 -48061169 - AluSx SINE Alu -15 297 1 209 162 18 90 chr15 37634926 37635037 -48060717 + T-rich Low_complexity Low_complexity 1 103 0 363 44 0 0 chr15 37635397 37635442 -48060312 + (TG)n Simple_repeat Simple_repeat 2 46 0 2185 91 27 3 chr15 37635622 37635918 -48059836 + AluSc SINE Alu 1 303 -6 1813 161 0 20 chr15 37636321 37636619 -48059135 + AluJb SINE Alu 2 293 -19 1950 103 0 33 chr15 37636889 37637191 -48058563 - AluY SINE Alu -19 292 1 1342 166 136 19 chr15 37637191 37637456 -48058298 - AluJo SINE Alu -16 296 1 316 207 37 37 chr15 37638284 37638366 -48057388 + MIR3 SINE MIR 113 194 -14 187 256 0 0 chr15 37639070 37639109 -48056645 - L2 LINE L2 -16 3297 3259 1862 106 16 4 chr15 37639474 37639728 -48056026 - AluSc SINE Alu -52 257 1 2233 114 0 3 chr15 37639965 37640272 -48055482 - AluSx SINE Alu -6 306 1 1283 171 9 14 chr15 37641118 37641340 -48054414 - AluJo SINE Alu -82 230 10 2166 136 0 0 chr15 37641626 37641934 -48053820 - AluSx SINE Alu -4 308 1 2117 129 0 3 chr15 37642318 37642628 -48053126 - AluSx SINE Alu -3 309 1 2357 108 0 0 chr15 37642694 37643000 -48052754 - AluSg SINE Alu -4 306 1 275 265 10 41 chr15 37643051 37643149 -48052605 + CT-rich Low_complexity Low_complexity 5 99 0 1648 166 80 0 chr15 37643668 37643981 -48051773 - MER44D DNA MER2_type 0 609 2 21 0 0 0 chr15 37644527 37644548 -48051206 + AT_rich Low_complexity Low_complexity 1 21 0 187 333 0 13 chr15 37644920 37644998 -48050756 + MIR SINE MIR 146 222 -40 254 82 204 0 chr15 37645165 37645214 -48050540 - L1MB4 LINE L1 -1 6179 6121 1173 132 123 5 chr15 37645313 37645532 -48050222 - L1MB4 LINE L1 -64 6116 5872 307 95 0 0 chr15 37645533 37645575 -48050179 - MSTA LTR MaLR 0 428 387 744 150 0 16 chr15 37645575 37645702 -48050052 + 7SK RNA RNA 1 125 -68 522 110 0 0 chr15 37645739 37645812 -48049942 + 7SK RNA RNA 121 193 0 * 832 124 138 0 chr15 37645806 37645951 -48049803 - MSTA LTR MaLR -22 406 242 832 134 168 0 chr15 37645952 37646101 -48049653 - MSTA LTR MaLR -254 174 1 1418 176 33 46 chr15 37646132 37646461 -48049293 - L1MB4 LINE L1 -286 5894 5570 29 28 0 0 chr15 37647099 37647135 -48048619 + AT_rich Low_complexity Low_complexity 1 36 0 5818 124 5 13 chr15 37647135 37647422 -48048332 - L1MA4A LINE L1 -15 6288 6002 2605 204 32 61 chr15 37647422 37647602 -48048152 - L1PA16 LINE L1 -159 6007 5823 2166 124 0 0 chr15 37647602 37647908 -48047846 - AluSx SINE Alu -6 306 1 2605 204 32 61 chr15 37647908 37648579 -48047175 - L1PA16 LINE L1 -343 5823 5198 275 218 100 0 chr15 37648582 37648692 -48047062 - L1M4 LINE L1 -2884 3964 3844 1415 194 44 14 chr15 37648697 37648991 -48046763 - AluJo SINE Alu 0 312 10 11500 168 82 49 chr15 37648999 37649931 -48045823 - L1M4 LINE L1 -3007 3841 2941 1562 182 6 59 chr15 37649931 37650255 -48045499 - AluJb SINE Alu -5 307 1 11500 168 82 49 chr15 37650255 37651140 -48044614 - L1M4 LINE L1 -3907 2941 2086 1750 166 0 14 chr15 37651140 37651429 -48044325 - AluJb SINE Alu -14 298 14 11500 168 82 49 chr15 37651429 37652934 -48042820 - L1M4 LINE L1 -4762 2086 328 1813 174 10 6 chr15 37652967 37653278 -48042476 + AluSx SINE Alu 1 312 0 1603 151 21 21 chr15 37653422 37653589 -48042165 - AluSx SINE Alu -9 303 134 1972 140 3 7 chr15 37653589 37653896 -48041858 - AluSq SINE Alu -7 306 1 1603 151 21 21 chr15 37653896 37654007 -48041747 - AluSx SINE Alu -177 135 25 1555 223 115 95 chr15 37654690 37655205 -48040549 - L1ME2 LINE L1 -23 6210 5706 321 153 14 83 chr15 37655205 37655260 -48040494 - Alu SINE Alu -250 52 17 1675 164 3 10 chr15 37655260 37655565 -48040189 - AluSq SINE Alu -10 303 1 321 153 14 83 chr15 37655565 37655581 -48040173 - Alu SINE Alu -285 17 1 1555 223 115 95 chr15 37655581 37656361 -48039393 - L1ME2 LINE L1 -527 5706 4810 219 307 7 21 chr15 37657214 37657354 -48038400 + GA-rich Low_complexity Low_complexity 1 138 0 2290 93 26 0 chr15 37657761 37658063 -48037691 + AluSx SINE Alu 1 310 -2 2070 253 115 5 chr15 37659369 37660123 -48035631 - L1ME2 LINE L1 -2024 4191 3355 478 261 113 54 chr15 37660131 37660243 -48035511 - L1ME2 LINE L1 -4763 1633 1529 2045 121 3 3 chr15 37660243 37660533 -48035221 - AluSx SINE Alu -22 290 1 478 261 113 54 chr15 37660533 37660949 -48034805 - L1ME2 LINE L1 -4867 1529 923 189 0 0 0 chr15 37660949 37660970 -48034784 + (TA)n Simple_repeat Simple_repeat 1 21 0 478 261 113 54 chr15 37660970 37661018 -48034736 - L1ME2 LINE L1 -5473 923 879 211 169 0 34 chr15 37661018 37661077 -48034677 + CT-rich Low_complexity Low_complexity 5 61 0 767 182 0 28 chr15 37661344 37661487 -48034267 - FLAM_C SINE Alu 0 143 5 2086 240 61 7 chr15 37661500 37662055 -48033699 - L1MD2 LINE L1 -2 6357 5773 243 346 40 46 chr15 37663353 37663682 -48032072 - L1ME2 LINE L1 -5712 684 358 426 39 0 0 chr15 37664139 37664191 -48031563 + (TA)n Simple_repeat Simple_repeat 2 53 0 2199 89 0 7 chr15 37664248 37664555 -48031199 - AluY SINE Alu 0 307 3 23 33 0 0 chr15 37664557 37664587 -48031167 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 37664614 37664636 -48031118 + AT_rich Low_complexity Low_complexity 1 22 0 1562 254 96 62 chr15 37664763 37665503 -48030251 - MER21B LTR ERV1 -82 781 17 1694 134 46 73 chr15 37665510 37665838 -48029916 - MER2 DNA MER2_type -25 320 2 2154 132 7 0 chr15 37665854 37666157 -48029597 - AluSx SINE Alu -7 305 1 485 266 44 38 chr15 37666216 37666374 -48029380 - L1MD2 LINE L1 -2144 5664 5506 272 274 44 53 chr15 37666598 37666711 -48029043 - MIR SINE MIR -32 230 119 25 31 0 0 chr15 37667345 37667377 -48028377 + AT_rich Low_complexity Low_complexity 1 32 0 1547 181 26 16 chr15 37668626 37668929 -48026825 + AluJo SINE Alu 1 306 -6 1910 159 0 0 chr15 37669316 37669625 -48026129 + AluJo SINE Alu 1 309 -3 305 194 16 0 chr15 37669923 37669985 -48025769 - MER96 DNA MER1_type? -112 63 1 245 335 117 5 chr15 37669993 37670181 -48025573 - L1ME LINE L1 -329 5841 5633 1912 120 59 45 chr15 37670811 37671169 -48024585 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chr15 37671363 37671391 -48024363 + AT_rich Low_complexity Low_complexity 1 28 0 434 241 92 29 chr15 37672253 37672427 -48023327 - L3 LINE CR1 -295 1282 1098 299 282 73 8 chr15 37672982 37673106 -48022648 - L1MC/D LINE L1 -1961 5847 5716 238 167 0 0 chr15 37673281 37673317 -48022437 + L2 LINE L2 3195 3230 -83 960 152 0 0 chr15 37673320 37673485 -48022269 + (TA)n Simple_repeat Simple_repeat 2 166 0 1371 80 0 11 chr15 37673485 37673661 -48022093 - AluSc SINE Alu -16 293 120 307 282 12 35 chr15 37673667 37673752 -48022002 + L2 LINE L2 3183 3265 -7 577 275 47 14 chr15 37673752 37673963 -48021791 - L1MC/D LINE L1 -2230 5578 5361 228 370 37 14 chr15 37674233 37674394 -48021360 - MIR SINE MIR -82 126 4 556 250 154 0 chr15 37674525 37674681 -48021073 + MER5A DNA MER1_type 10 189 0 210 341 130 0 chr15 37675058 37675181 -48020573 + MIR SINE MIR 54 192 -70 207 265 98 20 chr15 37675684 37675786 -48019968 + L3b LINE CR1 1277 1386 -197 1902 155 0 13 chr15 37675937 37676241 -48019513 - AluSx SINE Alu -1 311 12 241 244 13 51 chr15 37676259 37676337 -48019417 - L2 LINE L2 -17 3255 3181 235 234 16 0 chr15 37676474 37676538 -48019216 + L1MCa LINE L1 2006 2070 -4356 679 226 30 18 chr15 37678882 37679046 -48016708 - MER58B DNA MER1_type -4 337 172 870 205 0 0 chr15 37679053 37679209 -48016545 - AluJo SINE Alu -22 290 135 626 229 51 0 chr15 37679209 37679366 -48016388 - MER58B DNA MER1_type -138 203 39 186 103 0 0 chr15 37679432 37679461 -48016293 + (TAG)n Simple_repeat Simple_repeat 1 29 0 471 278 6 37 chr15 37679463 37679625 -48016129 - MIR SINE MIR -10 252 96 21 0 0 0 chr15 37679853 37679874 -48015880 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 37680556 37680579 -48015175 + AT_rich Low_complexity Low_complexity 1 23 0 1989 65 0 50 chr15 37680694 37680973 -48014781 - AluSc SINE Alu -44 265 1 2471 69 3 0 chr15 37681848 37682151 -48013603 + AluY SINE Alu 1 304 -7 231 170 0 0 chr15 37682303 37682350 -48013404 + (TA)n Simple_repeat Simple_repeat 1 47 0 21 36 0 0 chr15 37682407 37682435 -48013319 + AT_rich Low_complexity Low_complexity 1 28 0 207 194 0 0 chr15 37682702 37682738 -48013016 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 331 297 0 0 chr15 37682961 37683052 -48012702 + CT-rich Low_complexity Low_complexity 2 92 0 216 0 0 0 chr15 37683070 37683094 -48012660 + (T)n Simple_repeat Simple_repeat 1 24 0 743 171 8 8 chr15 37684160 37684289 -48011465 - AluJo SINE Alu -183 129 1 288 336 33 16 chr15 37684881 37685003 -48010751 + MIR3 SINE MIR 79 202 -6 22 35 0 0 chr15 37685052 37685081 -48010673 + AT_rich Low_complexity Low_complexity 1 29 0 535 237 116 70 chr15 37685253 37685582 -48010172 - L1ME4a LINE L1 -240 5881 5538 961 265 82 20 chr15 37685762 37686162 -48009592 - L1ME1 LINE L1 -8 6158 5734 208 262 135 64 chr15 37687178 37687319 -48008435 - L2 LINE L2 -166 3147 2997 284 328 69 0 chr15 37687596 37687712 -48008042 - L2 LINE L2 0 3313 3190 1226 149 57 34 chr15 37689130 37689392 -48006362 + Tigger6 DNA MER2_type 1330 1597 0 1454 270 95 72 chr15 37689394 37690142 -48005612 - L2 LINE L2 -2000 1314 550 200 215 8 157 chr15 37690166 37690287 -48005467 - L2 LINE L2 -3205 109 7 183 298 64 0 chr15 37690532 37690579 -48005175 + L2 LINE L2 3251 3300 -13 21 36 0 0 chr15 37691048 37691076 -48004678 + AT_rich Low_complexity Low_complexity 1 28 0 250 246 18 0 chr15 37691086 37691143 -48004611 - MER81 DNA DNA 0 114 57 399 359 129 46 chr15 37691473 37691799 -48003955 - L2 LINE L2 -4 3268 2916 243 305 9 57 chr15 37691833 37691938 -48003816 - L2 LINE L2 -660 2654 2555 611 316 60 35 chr15 37691961 37692639 -48003115 + L1M4 LINE L1 4280 4974 -1172 1493 289 101 44 chr15 37692735 37693234 -48002520 + L1MEc LINE L1 35 504 -5892 1479 184 0 46 chr15 37693234 37693538 -48002216 + AluJo SINE Alu 1 290 -22 1493 289 101 44 chr15 37693538 37694113 -48001641 + L1MEc LINE L1 504 1170 -5226 1604 284 68 15 chr15 37694136 37694885 -48000869 + L1MEc LINE L1 1277 2065 -4331 985 194 63 29 chr15 37694886 37695092 -48000662 + MER58A DNA MER1_type 3 215 -9 457 244 85 15 chr15 37695107 37695308 -48000446 + L1MEc LINE L1 2057 2271 -4125 461 155 0 0 chr15 37695308 37695379 -48000375 + FLAM_A SINE Alu 45 115 -27 303 229 55 0 chr15 37695397 37695506 -48000248 + L1MEc LINE L1 2257 2371 -4025 808 240 0 22 chr15 37695522 37695701 -48000053 + AluJb SINE Alu 136 310 -2 3945 257 75 60 chr15 37695825 37695853 -47999901 + L1M4 LINE L1 3589 3615 -2531 2200 90 13 13 chr15 37695853 37696152 -47999602 + AluY SINE Alu 1 299 -12 3945 257 75 60 chr15 37696152 37696590 -47999164 + L1M4 LINE L1 3615 4045 -2101 405 67 0 0 chr15 37696590 37696650 -47999104 - Alu SINE Alu -12 298 239 3945 257 75 60 chr15 37696650 37697837 -47997917 + L1M4 LINE L1 4045 5328 -818 14881 152 27 16 chr15 37697841 37699653 -47996101 + L1MA2 LINE L1 1977 3767 -3956 2150 125 0 7 chr15 37699653 37699958 -47995796 + AluSx SINE Alu 1 303 -9 459 28 14 28 chr15 37699961 37700032 -47995722 + (TA)n Simple_repeat Simple_repeat 2 71 0 14881 152 27 16 chr15 37700032 37700103 -47995651 + L1MA2 LINE L1 3768 3837 -3886 2018 171 54 20 chr15 37700103 37700512 -47995242 + MSTA LTR MaLR 5 427 -1 14881 152 27 16 chr15 37700512 37701029 -47994725 + L1MA2 LINE L1 3837 4347 -3376 1572 207 3 0 chr15 37701029 37701324 -47994430 + AluJo SINE Alu 1 296 -16 14881 152 27 16 chr15 37701324 37704597 -47991157 + L1MA2 LINE L1 4347 7723 0 306 197 0 0 chr15 37704599 37704660 -47991094 + L1M LINE L1 5297 5357 -805 21 0 0 0 chr15 37704905 37704926 -47990828 + AT_rich Low_complexity Low_complexity 1 21 0 205 220 20 0 chr15 37704926 37704976 -47990778 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 328 307 10 10 chr15 37705587 37705688 -47990066 + L1MDb LINE L1 1129 1229 -5180 367 302 117 38 chr15 37705729 37706178 -47989576 + L1MDb LINE L1 1213 1849 -4738 745 278 94 31 chr15 37706494 37707009 -47988745 + L1MDb LINE L1 2284 2785 -3621 500 213 8 8 chr15 37707517 37707639 -47988115 - L1MA9 LINE L1 -38 6274 6153 1791 148 17 17 chr15 37707855 37708145 -47987609 + AluJo SINE Alu 1 290 -22 2285 78 16 13 chr15 37708152 37708459 -47987295 + AluY SINE Alu 4 311 0 387 321 106 57 chr15 37708459 37709219 -47986535 - L2 LINE L2 -22 3250 2462 489 273 36 36 chr15 37710773 37710967 -47984787 + L2 LINE L2 3113 3306 -7 208 254 119 0 chr15 37711008 37711067 -47984687 - L2 LINE L2 -210 3062 2997 2387 90 0 0 chr15 37711179 37711480 -47984274 + AluSx SINE Alu 1 301 -11 776 308 75 61 chr15 37712860 37713681 -47982073 + L2 LINE L2 2052 2884 -430 31 0 0 0 chr15 37713705 37713736 -47982018 + AT_rich Low_complexity Low_complexity 1 31 0 1111 196 5 10 chr15 37713736 37713940 -47981814 - AluJb SINE Alu -23 289 87 681 252 7 7 chr15 37713945 37714100 -47981654 - MER5B DNA MER1_type -20 158 4 451 80 0 80 chr15 37714333 37714408 -47981346 - MER96B DNA MER1_type? -186 231 163 1652 189 36 0 chr15 37714412 37714693 -47981061 - AluJb SINE Alu -21 291 1 750 219 26 0 chr15 37714694 37714849 -47980905 - AluJb SINE Alu -37 275 117 616 183 44 7 chr15 37714849 37714986 -47980768 - MER96B DNA MER1_type? -275 142 1 441 301 15 7 chr15 37715009 37715145 -47980609 + L2 LINE L2 3136 3272 0 288 309 0 0 chr15 37715538 37715632 -47980122 - MER5A DNA MER1_type -82 107 14 323 350 29 7 chr15 37715651 37715791 -47979963 - MER5A DNA MER1_type 0 189 47 279 122 0 0 chr15 37716326 37716375 -47979379 + (T)n Simple_repeat Simple_repeat 1 49 0 2229 103 6 3 chr15 37716431 37716742 -47979012 - AluSq SINE Alu -1 312 1 417 185 46 37 chr15 37717063 37717171 -47978583 - AluJo/FRAM SINE Alu -8 304 196 244 184 0 0 chr15 37717171 37717209 -47978545 - Alu SINE Alu -264 38 1 725 283 64 54 chr15 37717209 37717393 -47978361 - L1MC/D LINE L1 -1985 5823 5642 2280 89 0 23 chr15 37717393 37717697 -47978057 - AluSc SINE Alu -12 297 1 1858 97 7 57 chr15 37717706 37718006 -47977748 - AluSx SINE Alu 0 312 28 725 283 64 54 chr15 37718006 37718312 -47977442 - L1MC/D LINE L1 -2173 5635 5318 1910 128 7 4 chr15 37718443 37718762 -47976992 - AluSx SINE Alu 0 320 1 1642 157 7 16 chr15 37718954 37719259 -47976495 + AluSx SINE Alu 11 312 0 322 254 191 0 chr15 37720027 37720153 -47975601 - MER103 DNA DNA -16 150 1 22 0 0 0 chr15 37720273 37720295 -47975459 + AT_rich Low_complexity Low_complexity 1 22 0 2234 91 7 0 chr15 37720995 37721291 -47974463 - AluSx SINE Alu -14 298 1 1000 205 5 0 chr15 37724129 37724314 -47971440 + MER5A DNA MER1_type 2 187 -2 385 172 108 21 chr15 37724530 37724623 -47971131 - L1MC2 LINE L1 -13 6331 6231 * 639 147 0 9 chr15 37724611 37724720 -47971034 - L1MC3 LINE L1 -332 7453 7346 2112 62 0 0 chr15 37724835 37725094 -47970660 - AluY SINE Alu -4 307 49 505 296 65 16 chr15 37725552 37725738 -47970016 - MIR SINE MIR -61 201 7 21 0 0 0 chr15 37725743 37725764 -47969990 + AT_rich Low_complexity Low_complexity 1 21 0 2121 128 0 0 chr15 37727184 37727481 -47968273 - AluSx SINE Alu -15 297 1 1771 95 37 0 chr15 37728171 37728412 -47967342 - AluY SINE Alu 0 311 62 274 243 63 36 chr15 37729097 37729152 -47966602 - L1MC4 LINE L1 -1 8041 7989 2224 105 31 0 chr15 37729152 37729446 -47966308 - AluSx SINE Alu -8 304 2 274 243 63 36 chr15 37729446 37729501 -47966253 - L1MC4 LINE L1 -53 7989 7928 222 329 0 26 chr15 37729507 37729583 -47966171 + CT-rich Low_complexity Low_complexity 4 77 0 352 203 110 68 chr15 37730484 37730602 -47965152 + L2 LINE L2 3191 3313 0 616 242 118 0 chr15 37730871 37731032 -47964722 - MER58C DNA MER1_type 0 215 36 305 233 33 33 chr15 37731133 37731253 -47964501 - L1MC5 LINE L1 -218 7743 7624 281 234 0 0 chr15 37731876 37731940 -47963814 - MER5A DNA MER1_type -77 112 49 192 40 0 0 chr15 37731945 37731970 -47963784 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2110 137 55 73 chr15 37732192 37732629 -47963125 - MSTB1 LTR MaLR 0 432 4 187 255 104 75 chr15 37732813 37732919 -47962835 - L2 LINE L2 -15 3298 3190 1823 119 28 32 chr15 37733411 37733696 -47962058 + AluJo SINE Alu 9 292 -20 300 242 150 39 chr15 37733701 37733854 -47961900 + L1ME4a LINE L1 5896 6065 -56 374 298 37 64 chr15 37735797 37736015 -47959739 - L1MC4 LINE L1 -1 8041 7830 1366 220 113 27 chr15 37736063 37736472 -47959282 - L1ME2 LINE L1 -23 6141 5698 2168 160 16 30 chr15 37736476 37736913 -47958841 - L1MB4 LINE L1 0 6180 5750 5100 189 38 18 chr15 37737133 37738347 -47957407 - L1MD2 LINE L1 -2 6357 5113 1548 160 0 4 chr15 37738644 37738888 -47956866 + AluJo SINE Alu 1 243 -69 21 36 0 0 chr15 37739011 37739039 -47956715 + AT_rich Low_complexity Low_complexity 1 28 0 2242 96 0 10 chr15 37739181 37739493 -47956261 - AluSc SINE Alu 0 309 1 3229 100 0 6 chr15 37739500 37739969 -47955785 - L1PA8 LINE L1 0 6172 5707 203 406 56 22 chr15 37740512 37740692 -47955062 + MIR3 SINE MIR 21 206 -2 730 222 58 94 chr15 37740960 37741491 -47954263 + L1MC5 LINE L1 7400 7911 -50 343 294 217 14 chr15 37741623 37741766 -47953988 - MIR3 SINE MIR -27 181 10 1574 121 4 4 chr15 37742207 37742438 -47953316 - AluJb SINE Alu -3 309 79 2207 4 0 0 chr15 37742529 37742767 -47952987 + AluYb8 SINE Alu 1 238 -80 3957 158 68 19 chr15 37742867 37743673 -47952081 - L1 LINE L1 -1233 5934 5089 5287 192 30 29 chr15 37743709 37744026 -47951728 - L1 LINE L1 -2635 4532 4217 2340 100 0 3 chr15 37744026 37744335 -47951419 - AluY SINE Alu -3 308 1 5287 192 30 29 chr15 37744335 37745144 -47950610 - L1 LINE L1 -2950 4217 3401 2205 107 3 0 chr15 37745144 37745435 -47950319 - AluSx SINE Alu -20 292 1 5287 192 30 29 chr15 37745435 37745606 -47950148 - L1 LINE L1 -3766 3401 3232 527 136 23 11 chr15 37745614 37745702 -47950052 + FLAM SINE Alu 38 126 -17 2186 149 25 159 chr15 37745753 37745864 -47949890 - L1 LINE L1 -3948 3220 3096 2438 75 0 0 chr15 37745864 37746169 -47949585 - AluY SINE Alu -6 305 1 216 0 0 0 chr15 37746171 37746195 -47949559 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2186 149 25 159 chr15 37746195 37746805 -47948949 - L1 LINE L1 -4073 3095 2593 1577 163 87 17 chr15 37746846 37747134 -47948620 - AluSx SINE Alu 0 312 5 736 190 0 0 chr15 37747211 37747332 -47948422 - AluJb SINE Alu -191 121 1 8056 186 24 9 chr15 37747332 37749004 -47946750 - L1 LINE L1 -4699 2469 676 24 32 0 0 chr15 37749607 37749638 -47946116 + AT_rich Low_complexity Low_complexity 1 31 0 224 359 11 11 chr15 37751257 37751349 -47944405 - L3 LINE CR1 -892 685 594 276 100 0 0 chr15 37751618 37751658 -47944096 + (TG)n Simple_repeat Simple_repeat 2 41 0 180 347 121 32 chr15 37752010 37752134 -47943620 + MIR3 SINE MIR 1 135 -73 341 179 325 8 chr15 37753659 37753782 -47941972 - MER103 DNA DNA -2 164 3 485 229 271 7 chr15 37753850 37753990 -47941764 + MER5B DNA MER1_type 1 177 -1 1531 197 69 3 chr15 37753999 37754319 -47941435 + MER58B DNA MER1_type 1 341 0 566 206 53 38 chr15 37754325 37754456 -47941298 + MER5A DNA MER1_type 2 134 -55 249 347 50 0 chr15 37755049 37755170 -47940584 + L3b LINE CR1 1371 1497 -86 265 296 49 12 chr15 37755464 37755545 -47940209 + L2 LINE L2 3187 3270 -2 1258 210 48 28 chr15 37756127 37756418 -47939336 + AluJo SINE Alu 1 297 -15 2101 132 3 0 chr15 37756784 37757087 -47938667 - AluSx SINE Alu -8 304 1 207 0 0 0 chr15 37757267 37757290 -47938464 + (T)n Simple_repeat Simple_repeat 1 23 0 404 311 74 7 chr15 37757717 37757865 -47937889 + MER20B DNA MER1_type 4 161 -622 460 228 44 22 chr15 37758126 37758262 -47937492 + Charlie8 DNA MER1_type 25 163 -2254 185 192 0 39 chr15 37758515 37758567 -47937187 + (TATG)n Simple_repeat Simple_repeat 2 51 0 822 141 59 0 chr15 37758854 37758989 -47936765 + L1MC4 LINE L1 6803 6945 -1097 21 0 0 0 chr15 37759005 37759026 -47936728 + AT_rich Low_complexity Low_complexity 1 21 0 2219 232 98 7 chr15 37759059 37759658 -47936096 + L1MC4 LINE L1 7238 7891 -151 2028 127 7 0 chr15 37759678 37759986 -47935768 - AluSx SINE Alu -2 310 1 281 225 28 0 chr15 37759995 37760066 -47935688 + L1MC4 LINE L1 7969 8041 -1 538 196 0 0 chr15 37760931 37761033 -47934721 + U13 snRNA snRNA 1 102 -2 304 306 115 25 chr15 37761116 37761273 -47934481 + L1ME4a LINE L1 5901 6071 -50 22 0 0 0 chr15 37761835 37761857 -47933897 + AT_rich Low_complexity Low_complexity 1 22 0 231 170 0 0 chr15 37761953 37762000 -47933754 + CT-rich Low_complexity Low_complexity 4 50 0 614 157 107 8 chr15 37762002 37762123 -47933631 - FLAM_A SINE Alu 0 133 1 311 247 193 13 chr15 37762946 37763096 -47932658 - MIR SINE MIR -12 250 74 1106 166 83 25 chr15 37763151 37763429 -47932325 + MER33 DNA MER1_type 31 324 0 180 77 0 0 chr15 37766461 37766487 -47929267 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 315 232 179 0 chr15 37767501 37767613 -47928141 + HAL1 LINE L1 101 232 -2275 2073 69 22 100 chr15 37767662 37767982 -47927772 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr15 37768113 37768134 -47927620 + AT_rich Low_complexity Low_complexity 1 21 0 329 167 0 0 chr15 37768134 37768182 -47927572 + A-rich Low_complexity Low_complexity 1 48 0 409 262 122 33 chr15 37768340 37768554 -47927200 - L1ME LINE L1 -351 5770 5538 180 0 0 0 chr15 37768560 37768580 -47927174 + (TA)n Simple_repeat Simple_repeat 2 21 0 2337 214 108 57 chr15 37768713 37769752 -47926002 + L1MC5 LINE L1 6693 7913 -48 891 145 0 0 chr15 37769770 37769901 -47925853 + FLAM_C SINE Alu 1 131 -2 22 56 0 0 chr15 37770550 37770586 -47925168 + AT_rich Low_complexity Low_complexity 1 36 0 418 318 76 0 chr15 37770885 37771017 -47924737 - L2 LINE L2 -13 3259 3118 211 143 29 0 chr15 37772343 37772378 -47923376 + L2 LINE L2 3266 3301 -12 23 0 0 0 chr15 37772871 37772894 -47922860 + AT_rich Low_complexity Low_complexity 1 23 0 1301 183 119 4 chr15 37773380 37773648 -47922106 - AluJo SINE Alu -13 299 1 237 257 158 13 chr15 37773649 37773801 -47921953 - Charlie7 DNA MER1_type -5 2607 2434 * 288 289 72 0 chr15 37773784 37773881 -47921873 - Charlie7 DNA MER1_type -2508 104 1 354 264 102 89 chr15 37773955 37774270 -47921484 + L1ME4a LINE L1 5792 6110 -11 288 174 23 35 chr15 37774331 37774417 -47921337 + L1MC5 LINE L1 7833 7917 -44 309 26 0 0 chr15 37774572 37774610 -47921144 + (CA)n Simple_repeat Simple_repeat 2 39 0 2297 99 0 7 chr15 37774764 37775068 -47920686 - AluSg1 SINE Alu -7 302 1 395 261 190 0 chr15 37775401 37775543 -47920211 + MIR SINE MIR 76 244 -18 409 275 111 65 chr15 37775675 37776038 -47919716 + MLT1L LTR MaLR 165 553 -35 684 194 0 8 chr15 37777051 37777180 -47918574 + FLAM_C SINE Alu 2 129 -4 251 288 72 22 chr15 37777264 37777403 -47918351 + HAL1 LINE L1 1429 1574 -933 289 272 9 65 chr15 37778148 37778380 -47917374 + L1M4 LINE L1 2135 2353 -3793 313 332 97 16 chr15 37778624 37778871 -47916883 + L1M4 LINE L1 2673 2939 -3207 381 232 122 0 chr15 37779028 37779110 -47916644 - MER96 DNA MER1_type? 0 175 84 254 222 0 0 chr15 37779189 37779243 -47916511 + MER96 DNA MER1_type? 118 171 -4 426 221 16 8 chr15 37779289 37779416 -47916338 + CT-rich Low_complexity Low_complexity 2 129 0 1854 120 16 79 chr15 37779733 37779869 -47915885 + AluSx SINE Alu 1 144 -168 2463 83 3 0 chr15 37779869 37780181 -47915573 + AluSp SINE Alu 1 313 0 1854 120 16 79 chr15 37780181 37780360 -47915394 + AluSx SINE Alu 144 296 -16 1846 124 52 0 chr15 37781081 37781371 -47914383 + AluSx SINE Alu 1 305 -7 2306 84 3 3 chr15 37781492 37781789 -47913965 + AluSc SINE Alu 1 297 -12 489 137 0 0 chr15 37781853 37781926 -47913828 + AluS SINE Alu 1 73 -239 2061 126 0 36 chr15 37832185 37832494 -47863260 - AluSx SINE Alu -14 298 1 1900 218 35 48 chr15 37832796 37833277 -47862477 + MLT2B1 LTR ERVL 1 475 -45 1595 161 47 4 chr15 37833279 37833546 -47862208 + MER7A DNA MER2_type 3 279 -67 601 154 11 0 chr15 37833546 37833637 -47862117 - LTR36 LTR ERV1 0 611 520 1272 82 6 6 chr15 37833637 37833807 -47861947 + L1PA12 LINE L1 5673 5842 -326 1064 226 48 96 chr15 37836960 37837485 -47858269 + MER34 LTR ERV1 1 557 -38 2327 94 0 10 chr15 37837579 37837877 -47857877 - AluSg SINE Alu -15 295 1 509 240 187 0 chr15 37837877 37838027 -47857727 - MER5A DNA MER1_type -3 186 9 778 179 17 29 chr15 37838041 37838214 -47857540 - MER5A DNA MER1_type -18 171 1 356 295 77 0 chr15 37838214 37838368 -47857386 + MIR SINE MIR 17 182 -80 242 200 17 33 chr15 37839126 37839186 -47856568 - MLT1K LTR MaLR -8 580 522 190 278 200 17 chr15 37840251 37840366 -47855388 - MIR3 SINE MIR -15 193 58 404 237 167 32 chr15 37841227 37841383 -47854371 + MIR SINE MIR 29 205 -57 375 264 208 0 chr15 37841392 37841536 -47854218 - MER5A DNA MER1_type -7 182 9 252 205 241 18 chr15 37842929 37843041 -47852713 - MER117 DNA MER1_type -60 137 1 717 272 144 7 chr15 37843167 37843472 -47852282 - L3 LINE CR1 -82 1495 1149 312 83 0 0 chr15 37843699 37843747 -47852007 + (CA)n Simple_repeat Simple_repeat 2 49 0 3658 111 52 32 chr15 37843969 37844589 -47851165 + MER39B LTR ERV1 20 651 -2 198 259 52 17 chr15 37844807 37844865 -47850889 - MIR SINE MIR -163 99 40 226 208 0 0 chr15 37845079 37845127 -47850627 + MIR SINE MIR 104 151 -111 1106 185 19 5 chr15 37845573 37845789 -47849965 - MER20 DNA MER1_type 0 219 1 191 294 39 49 chr15 37846917 37847019 -47848735 - MIR3 SINE MIR -9 199 99 547 245 99 19 chr15 37847026 37847255 -47848499 - MIR SINE MIR -3 259 8 180 244 24 0 chr15 37847364 37847405 -47848349 - L2 LINE L2 -94 3178 3137 1985 89 0 11 chr15 37847469 37847751 -47848003 + AluY SINE Alu 31 309 -2 185 318 79 24 chr15 37848140 37848266 -47847488 + L2 LINE L2 3137 3269 -3 1992 138 53 60 chr15 37848689 37849087 -47846667 - MLT2C1 LTR ERVL -2 395 1 1316 264 63 34 chr15 37849403 37849850 -47845904 + LTR40c LTR ERVL 1 460 -5 273 291 47 0 chr15 37850141 37850227 -47845527 - L2 LINE L2 -38 3275 3186 753 154 73 0 chr15 37850832 37850955 -47844799 + AluSq/x SINE Alu 2 133 -179 242 336 97 35 chr15 37851239 37851352 -47844402 - L2 LINE L2 -8 3264 3145 295 313 88 19 chr15 37851576 37851736 -47844018 - MIR SINE MIR -43 219 49 397 291 85 7 chr15 37851852 37851993 -47843761 + L3 LINE CR1 1425 1576 -1 1894 176 27 32 chr15 37852316 37852669 -47843085 + MLT1A2 LTR MaLR 2 354 -20 2385 143 87 2 chr15 37852669 37853062 -47842692 - MSTB LTR MaLR 0 426 1 1894 176 27 32 chr15 37853062 37853083 -47842671 + MLT1A2 LTR MaLR 354 374 0 369 339 26 43 chr15 37854751 37854981 -47840773 + L2 LINE L2 2545 2770 -544 462 365 63 4 chr15 37855155 37855393 -47840361 - MIR SINE MIR -10 252 1 2137 195 73 26 chr15 37855566 37855709 -47840045 + MER63 DNA MER1_type 501 636 -425 1067 206 28 5 chr15 37855709 37855927 -47839827 + MER58A DNA MER1_type 2 224 0 2137 195 73 26 chr15 37855927 37856290 -47839464 + MER63 DNA MER1_type 636 1031 -30 439 244 175 6 chr15 37856983 37857143 -47838611 + MIR SINE MIR 21 207 -55 1368 140 133 7 chr15 37857228 37857499 -47838255 - AluJb SINE Alu -2 310 6 207 100 0 0 chr15 37858379 37858409 -47837345 + (CACCC)n Simple_repeat Simple_repeat 4 33 0 1001 195 5 11 chr15 37858796 37858981 -47836773 - MER5A DNA MER1_type -5 184 1 308 334 234 10 chr15 37859448 37859849 -47835905 + MLT1K LTR MaLR 98 588 0 958 187 16 16 chr15 37860710 37860897 -47834857 + MER5A DNA MER1_type 3 189 0 1744 129 44 14 chr15 37861279 37861573 -47834181 + AluSx SINE Alu 1 303 -9 446 298 50 0 chr15 37862342 37862503 -47833251 + MIR SINE MIR 75 243 -19 201 366 10 30 chr15 37862614 37862715 -47833039 + L2 LINE L2 3173 3271 -1 233 222 19 19 chr15 37862911 37862965 -47832789 - MIR SINE MIR -94 114 61 532 265 142 12 chr15 37863319 37863481 -47832273 + MER5A DNA MER1_type 7 189 0 2120 113 3 6 chr15 37863946 37864257 -47831497 - AluSx SINE Alu -2 310 1 416 303 56 0 chr15 37864307 37864449 -47831305 - L2 LINE L2 0 3272 3123 446 228 24 8 chr15 37864641 37864768 -47830986 + L1MC4 LINE L1 7689 7817 -225 957 118 0 0 chr15 37864782 37864917 -47830837 + AluSg/x SINE Alu 163 297 -15 227 228 114 44 chr15 37865015 37865173 -47830581 + L1MC4 LINE L1 7874 8042 0 436 362 15 10 chr15 37865278 37865474 -47830280 - MIR SINE MIR -46 216 20 251 215 15 15 chr15 37866237 37866302 -47829452 + L2 LINE L2 3197 3261 -11 2288 139 35 11 chr15 37866304 37866679 -47829075 + MLT1B LTR MaLR 1 384 -6 1342 157 119 81 chr15 37867017 37867438 -47828316 + LTR7 LTR ERV1 1 437 -13 1878 120 4 0 chr15 37867910 37868185 -47827569 + AluSx SINE Alu 1 276 -36 440 265 66 0 chr15 37868380 37868516 -47827238 + MIR SINE MIR 74 218 -44 21 36 0 0 chr15 37869355 37869383 -47826371 + AT_rich Low_complexity Low_complexity 1 28 0 324 202 73 46 chr15 37869398 37869507 -47826247 + MER90 LTR ERV1 356 467 -147 219 275 0 75 chr15 37869602 37869682 -47826072 + MIR SINE MIR 130 203 -59 572 228 71 49 chr15 37871244 37871380 -47824374 + MER5A DNA MER1_type 2 145 -44 2178 105 0 0 chr15 37871380 37871684 -47824070 + AluSg SINE Alu 1 304 -6 572 228 71 49 chr15 37871684 37871731 -47824023 + MER5A DNA MER1_type 145 189 0 206 213 0 0 chr15 37874315 37874362 -47821392 + L2 LINE L2 3002 3048 -224 3057 218 54 35 chr15 37874467 37875203 -47820551 - MER97a DNA MER1_type? 0 894 139 2031 107 3 3 chr15 37875203 37875494 -47820260 - AluSq SINE Alu -22 291 1 3057 218 54 35 chr15 37875494 37875591 -47820163 - MER97a DNA MER1_type? -755 139 45 1614 166 71 25 chr15 37875766 37876134 -47819620 + Charlie1 DNA MER1_type 2343 2727 -34 263 238 79 56 chr15 37876577 37876703 -47819051 + MIR SINE MIR 21 149 -113 1256 132 18 53 chr15 37876888 37877115 -47818639 - MER20 DNA MER1_type 0 219 1 795 217 29 10 chr15 37877506 37877713 -47818041 + L1ME3A LINE L1 5747 5957 -213 1819 239 176 26 chr15 37879865 37880019 -47815735 - L2 LINE L2 -1 3312 3183 2246 77 3 0 chr15 37880019 37880317 -47815437 + AluSg SINE Alu 1 299 -11 1819 239 176 26 chr15 37880317 37881060 -47814694 - L2 LINE L2 -130 3183 2284 2250 99 0 0 chr15 37881219 37881523 -47814231 - AluSg SINE Alu -2 308 5 195 284 122 14 chr15 37882212 37882286 -47813468 + MIR SINE MIR 70 151 -111 287 25 25 0 chr15 37882421 37882461 -47813293 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 597 116 12 0 chr15 37882461 37882547 -47813207 - FLAM_C SINE Alu -27 116 30 186 286 0 0 chr15 37883144 37883161 -47812593 + MIR SINE MIR 201 249 -13 189 156 0 0 chr15 37883161 37883193 -47812561 + L2 LINE L2 3263 3294 -19 490 267 118 44 chr15 37883248 37883263 -47812491 + MIR SINE MIR 11 23 -239 1812 148 0 17 chr15 37883263 37883561 -47812193 + AluJo SINE Alu 9 301 -11 490 267 118 44 chr15 37883561 37883779 -47811975 + MIR SINE MIR 23 257 -5 244 261 90 85 chr15 37883905 37884093 -47811661 - MER5A DNA MER1_type 0 189 1 1859 127 3 47 chr15 37884597 37884919 -47810835 - AluSx SINE Alu -4 308 1 254 319 111 15 chr15 37885370 37885505 -47810249 - MIR SINE MIR -103 159 12 391 217 252 14 chr15 37885993 37886136 -47809618 + MIR SINE MIR 62 238 -24 408 200 127 5 chr15 37886136 37886274 -47809480 - MIR SINE MIR -62 146 41 430 261 147 6 chr15 37887255 37887412 -47808342 - MIR SINE MIR -60 202 24 2048 159 25 30 chr15 37887536 37888054 -47807700 - MLT2A2 LTR ERVL -44 508 1 1391 166 78 71 chr15 37888463 37888636 -47807118 - LTR37A LTR ERV1 -2 424 254 2419 53 3 0 chr15 37888636 37888939 -47806815 + AluY SINE Alu 1 304 -7 1391 166 78 71 chr15 37888939 37889186 -47806568 - LTR37A LTR ERV1 -172 254 1 386 299 22 7 chr15 37889369 37889506 -47806248 + MIR SINE MIR 94 232 -30 1331 167 4 32 chr15 37889760 37890012 -47805742 + AluJo SINE Alu 66 310 -2 2186 109 0 0 chr15 37891228 37891539 -47804215 + AluSx SINE Alu 1 311 -1 449 264 9 0 chr15 37892169 37892275 -47803479 - L2 LINE L2 -1120 2194 2088 2223 98 0 16 chr15 37892315 37892632 -47803122 + AluSp SINE Alu 1 312 -1 404 294 102 53 chr15 37892712 37892997 -47802757 - L1MC/D LINE L1 -751 5395 5216 654 264 96 16 chr15 37893192 37893632 -47802122 - L1ME4a LINE L1 -4 6117 5643 2085 153 21 44 chr15 37893654 37894041 -47801713 - L1PA16 LINE L1 -20 6146 5769 325 277 71 113 chr15 37894044 37894354 -47801400 - L1ME4a LINE L1 -472 5649 5353 1066 194 128 53 chr15 37894676 37894996 -47800758 + MER2 DNA MER2_type 1 344 0 695 313 68 27 chr15 37895100 37895582 -47800172 - L1MC/D LINE L1 -1997 5811 5310 1981 110 0 58 chr15 37895724 37896051 -47799703 - AluSg SINE Alu -2 308 1 566 322 79 48 chr15 37896758 37897226 -47798528 - L1MC/D LINE L1 -2756 3390 2897 3228 134 54 33 chr15 37897226 37897742 -47798012 - MER1A DNA MER1_type 0 527 1 566 322 79 48 chr15 37897742 37897791 -47797963 - L1MC/D LINE L1 -3249 2897 2851 26 0 0 0 chr15 37897816 37897842 -47797912 + AT_rich Low_complexity Low_complexity 1 26 0 * 752 256 71 27 chr15 37897830 37898166 -47797588 - L1MC4 LINE L1 -4 8038 7688 228 185 9 93 chr15 37898154 37898262 -47797492 + L1MC4 LINE L1 6605 6703 -1339 * 433 190 140 0 chr15 37898686 37898786 -47796968 - MIR SINE MIR -76 186 73 307 307 99 67 chr15 37898872 37899510 -47796244 - L1MC/D LINE L1 -3315 2831 2174 2521 53 0 7 chr15 37899524 37899826 -47795928 + AluY SINE Alu 1 300 -11 386 232 22 80 chr15 37899884 37900022 -47795732 + MIR SINE MIR 63 192 -70 180 0 0 0 chr15 37901040 37901060 -47794694 + (T)n Simple_repeat Simple_repeat 1 20 0 336 205 60 24 chr15 37901080 37901163 -47794591 - MER5A DNA MER1_type -31 158 73 2218 133 0 0 chr15 37901174 37901483 -47794271 - AluSx SINE Alu -3 309 1 456 252 111 28 chr15 37901551 37901703 -47794051 + MIR SINE MIR 38 199 -58 2122 132 0 0 chr15 37901935 37902231 -47793523 - AluSx SINE Alu -12 300 5 21 57 0 0 chr15 37902382 37902417 -47793337 + AT_rich Low_complexity Low_complexity 1 35 0 4254 160 11 16 chr15 37904451 37905199 -47790555 + MER49 LTR ERV1 180 923 0 253 218 18 18 chr15 37905401 37905456 -47790298 + MLT1E2 LTR MaLR 1 55 -599 2082 223 73 5 chr15 37905493 37905932 -47789822 + MLT1E2 LTR MaLR 156 624 -2 698 299 113 0 chr15 37906213 37906444 -47789310 + MLT1L LTR MaLR 359 615 0 266 273 23 47 chr15 37906738 37906866 -47788888 + MIR SINE MIR 78 202 -60 283 190 0 35 chr15 37906908 37906966 -47788788 + L2 LINE L2 3250 3305 -8 1943 128 4 0 chr15 37907581 37907855 -47787899 + L1PA13 LINE L1 5886 6160 -3 1013 189 139 0 chr15 37907855 37908093 -47787661 - L1 LINE L1 -1609 4537 4267 2858 135 103 10 chr15 37908093 37908590 -47787164 - LTR36 LTR ERV1 -68 543 1 295 264 0 14 chr15 37908590 37908662 -47787092 + Tigger3(Golem) DNA MER2_type 2956 3026 -3 674 55 11 0 chr15 37908662 37908753 -47787001 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 299 114 0 0 chr15 37908753 37908797 -47786957 + MLT2B1 LTR ERVL 477 520 0 241 247 243 95 chr15 37908989 37909078 -47786676 - L2 LINE L2 -2 3311 3237 2181 117 0 7 chr15 37909078 37909387 -47786367 - AluSx SINE Alu 0 312 6 241 247 243 95 chr15 37909387 37909540 -47786214 - L2 LINE L2 -76 3237 3033 1834 189 30 11 chr15 37909569 37909935 -47785819 - MLT1D LTR MaLR 0 505 133 2719 148 33 86 chr15 37909950 37910552 -47785202 + MER34C LTR ERV1 16 585 0 2125 157 52 11 chr15 37910587 37910956 -47784798 - MLT1B LTR MaLR 0 390 7 4169 119 49 10 chr15 37911559 37912187 -47783567 + MER39B LTR ERV1 1 653 0 967 167 90 162 chr15 37912928 37913317 -47782437 + MER4C LTR ERV1 2 362 -103 8275 149 35 45 chr15 37913403 37915249 -47780505 + MER4C-int LTR ERV1 3192 5670 -923 900 99 0 8 chr15 37915249 37915370 -47780384 - AluSg/x SINE Alu -10 300 181 3710 96 69 22 chr15 37915370 37915952 -47779802 + MER4C-int LTR ERV1 5236 5844 -487 325 167 26 13 chr15 37915961 37916039 -47779715 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 273 245 35 77 chr15 37916059 37916202 -47779552 + MER4C-int LTR ERV1 6291 6427 -171 694 270 5 25 chr15 37916208 37916408 -47779346 + MER4C-int LTR ERV1 6395 6590 -8 1354 203 86 92 chr15 37916415 37916883 -47778871 + MER4C LTR ERV1 1 465 0 249 342 52 52 chr15 37917172 37917327 -47778427 - MIR3 SINE MIR -51 157 3 303 93 0 0 chr15 37917495 37917538 -47778216 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 103 0 0 chr15 37917538 37917567 -47778187 + (GA)n Simple_repeat Simple_repeat 1 29 0 32522 107 11 59 chr15 37918114 37924572 -47771182 - L1PA7 LINE L1 -1 6153 12 1212 196 60 105 chr15 37924645 37925027 -47770727 + MLT1A1 LTR MaLR 1 365 0 2083 161 19 16 chr15 37925142 37925509 -47770245 - L1MC1 LINE L1 0 6333 5966 2152 189 60 25 chr15 37926281 37926730 -47769024 + MLT1C LTR MaLR 3 467 0 471 258 38 15 chr15 37926736 37926868 -47768886 + L2 LINE L2 3179 3313 0 547 276 70 13 chr15 37926915 37927143 -47768611 - MIR SINE MIR -3 259 19 378 0 0 0 chr15 37927401 37927443 -47768311 + (TG)n Simple_repeat Simple_repeat 2 43 0 284 281 73 0 chr15 37927877 37927959 -47767795 + L2 LINE L2 3184 3271 -1 338 301 103 29 chr15 37928323 37928459 -47767295 - MER5A DNA MER1_type -37 152 7 1966 143 10 0 chr15 37930337 37930637 -47765117 - AluSx SINE Alu -7 305 3 1605 149 87 7 chr15 37932581 37932856 -47762898 - AluSx SINE Alu -14 298 2 315 313 52 9 chr15 37933187 37933302 -47762452 - MIR SINE MIR -117 145 26 1079 73 26 0 chr15 37934181 37934332 -47761422 + MER41B LTR ERV1 481 635 0 575 139 58 0 chr15 37934332 37934418 -47761336 + MER41B-int LTR ERV1 1 91 -5855 * 1668 80 14 0 chr15 37934414 37934627 -47761127 + MER41B-int LTR ERV1 5729 5944 -2 3331 136 41 9 chr15 37934627 37935158 -47760596 + MER41B LTR ERV1 1 548 -87 415 314 78 4 chr15 37935167 37935412 -47760342 + L1ME4a LINE L1 5652 5914 -207 245 186 207 43 chr15 37935680 37935820 -47759934 + L1ME LINE L1 5316 5478 -2330 299 258 0 0 chr15 37936068 37936134 -47759620 - LTR16A LTR ERVL -10 440 375 317 300 45 24 chr15 37936166 37936397 -47759357 - LTR16A LTR ERVL -171 286 25 1966 139 0 0 chr15 37936439 37936719 -47759035 - AluJb SINE Alu -9 303 24 378 284 98 44 chr15 37936902 37937127 -47758627 + L1ME LINE L1 5492 5728 -393 2174 104 16 7 chr15 37937434 37937743 -47758011 + AluSx SINE Alu 1 312 0 2229 120 0 0 chr15 37937751 37938059 -47757695 + AluSg SINE Alu 3 310 0 7339 35 2 0 chr15 37939080 37939936 -47755818 - L1PA5 LINE L1 0 6154 5297 4872 39 0 0 chr15 37939936 37940520 -47755234 + L1PA5 LINE L1 4723 5306 -840 2306 147 13 37 chr15 37940812 37941268 -47754486 + MLT2B3 LTR ERVL 1 469 -46 321 135 0 0 chr15 37941280 37941332 -47754422 + (CA)n Simple_repeat Simple_repeat 2 53 0 292 135 77 0 chr15 37941332 37941384 -47754370 + MLT2B3 LTR ERVL 465 520 0 1803 223 122 66 chr15 37941578 37942273 -47753481 - MER50 LTR ERV1 0 734 1 234 266 79 72 chr15 37942901 37943040 -47752714 - L2 LINE L2 -3 3310 3171 182 233 47 0 chr15 37944013 37944056 -47751698 - L2 LINE L2 0 3272 3228 695 246 174 0 chr15 37944189 37944384 -47751370 - MIR SINE MIR -21 241 13 243 0 0 0 chr15 37944644 37944671 -47751083 + (TG)n Simple_repeat Simple_repeat 2 28 0 7620 164 55 40 chr15 37945081 37946276 -47749478 + Charlie5 DNA MER1_type 25 1306 -1318 2195 78 0 0 chr15 37946276 37946546 -47749208 - L1PA6 LINE L1 0 6154 5885 7620 164 55 40 chr15 37946546 37947204 -47748550 + Charlie5 DNA MER1_type 1306 1952 -672 733 202 23 0 chr15 37947218 37947347 -47748407 + AluJo SINE Alu 2 133 -179 233 138 50 0 chr15 37947336 37947404 -47748350 + A-rich Low_complexity Low_complexity 2 60 0 * 838 192 0 62 chr15 37947416 37947593 -47748161 + AluJo SINE Alu 117 282 -30 381 113 0 0 chr15 37947611 37947664 -47748090 + L1MB1 LINE L1 6115 6167 -1 972 167 6 17 chr15 37947820 37948000 -47747754 - MER2 DNA MER2_type -135 210 33 * 2547 183 39 50 chr15 37947999 37948264 -47747490 + Charlie5 DNA MER1_type 1958 2224 -400 1822 161 20 10 chr15 37948264 37948562 -47747192 + AluSx SINE Alu 3 303 -9 2547 183 39 50 chr15 37948562 37948963 -47746791 + Charlie5 DNA MER1_type 2224 2617 -7 337 311 38 0 chr15 37948987 37949093 -47746661 + L2 LINE L2 3203 3312 -1 337 120 0 0 chr15 37949152 37949202 -47746552 - MER2 DNA MER2_type -183 162 113 279 290 97 0 chr15 37949204 37949328 -47746426 - L1ME LINE L1 -458 5663 5528 280 309 111 31 chr15 37949382 37949544 -47746210 + MIR SINE MIR 76 250 -12 21 36 0 0 chr15 37949837 37949865 -47745889 + AT_rich Low_complexity Low_complexity 1 28 0 710 147 149 18 chr15 37950035 37950238 -47745516 + MER33 DNA MER1_type 1 232 -92 22 0 0 0 chr15 37950289 37950311 -47745443 + AT_rich Low_complexity Low_complexity 1 22 0 1017 128 0 0 chr15 37950311 37950444 -47745310 - FLAM_C SINE Alu 0 133 1 1904 135 10 23 chr15 37950470 37950774 -47744980 - Tigger1 DNA MER2_type 0 2418 2119 * 4522 135 20 62 chr15 37950753 37951539 -47744215 - Tigger1 DNA MER2_type -1665 753 1 1131 280 72 10 chr15 37952007 37952411 -47743343 - LTR16B LTR ERVL 0 464 36 236 267 310 0 chr15 37952617 37952733 -47743021 + MIR SINE MIR 57 208 -54 684 298 137 12 chr15 37952936 37953278 -47742476 + L2 LINE L2 2928 3312 -1 239 325 43 26 chr15 37953810 37953927 -47741827 + L3 LINE CR1 1452 1570 -7 811 243 11 11 chr15 37954346 37954523 -47741231 + MIR3 SINE MIR 1 177 -31 485 222 123 37 chr15 37955530 37955692 -47740062 + MIR SINE MIR 57 232 -30 339 222 51 91 chr15 37957107 37957283 -47738471 - MIR SINE MIR -61 201 33 304 271 0 12 chr15 37957346 37957431 -47738323 + MIR SINE MIR 56 139 -123 186 43 0 0 chr15 37957433 37957456 -47738298 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 5702 157 15 3 chr15 37957464 37957959 -47737795 - L1MA5 LINE L1 -10 6290 5777 477 0 0 0 chr15 37957959 37958012 -47737742 + (TG)n Simple_repeat Simple_repeat 2 54 0 5702 157 15 3 chr15 37958012 37958467 -47737287 - L1MA5 LINE L1 -523 5777 5329 4354 185 30 7 chr15 37958467 37959368 -47736386 + L1 LINE L1 4212 5133 -1013 1249 198 0 0 chr15 37959368 37959580 -47736174 + AluJo SINE Alu 87 298 -14 14802 213 26 19 chr15 37959634 37964422 -47731332 + L1PA16 LINE L1 1992 6882 0 882 199 61 0 chr15 37964498 37964694 -47731060 + L1 LINE L1 5119 5326 -820 523 329 78 76 chr15 37964701 37964873 -47730881 + L2 LINE L2 2084 2254 -1060 1797 86 4 13 chr15 37964873 37965105 -47730649 - MER30 DNA MER1_type 0 230 1 523 329 78 76 chr15 37965105 37965601 -47730153 + L2 LINE L2 2254 2753 -561 4112 149 18 1 chr15 37965611 37965751 -47730003 - L1MB2 LINE L1 -23 6148 6009 2174 225 37 77 chr15 37965751 37966638 -47729116 - L1ME1 LINE L1 -165 6001 5175 319 279 14 95 chr15 37966852 37966902 -47728852 + L2 LINE L2 3178 3230 -83 783 211 79 49 chr15 37966902 37967167 -47728587 - ORSL DNA AcHobo -2 273 1 319 279 14 95 chr15 37967167 37967263 -47728491 + L2 LINE L2 3230 3312 -1 563 218 68 20 chr15 37967586 37967733 -47728021 - L1MA10 LINE L1 -2 6332 6179 * 1583 218 58 12 chr15 37967731 37968209 -47727545 - L1M4 LINE L1 -1409 4737 4213 2436 160 16 40 chr15 37969001 37969231 -47726523 - Tigger2a DNA MER2_type -2274 434 219 12290 147 12 3 chr15 37969231 37972059 -47723695 + L1PA11 LINE L1 3328 6166 -8 2436 160 16 40 chr15 37972059 37972273 -47723481 - Tigger2a DNA MER2_type -2489 219 1 1547 229 53 17 chr15 37973086 37973501 -47722253 + LTR16A LTR ERVL 21 450 0 322 164 0 0 chr15 37973501 37973556 -47722198 - MIR SINE MIR -61 147 93 538 267 44 32 chr15 37973557 37973774 -47721980 + MIR SINE MIR 27 242 -20 872 179 42 147 chr15 37973849 37974162 -47721592 - MER33 DNA MER1_type -9 354 39 818 253 137 22 chr15 37974585 37975145 -47720609 + L1ME4a LINE L1 5287 5923 -198 711 231 123 15 chr15 37975252 37975520 -47720234 - L1ME2 LINE L1 -10 6154 5858 2571 62 0 10 chr15 37975575 37975883 -47719871 - AluY SINE Alu -6 305 1 2149 121 0 0 chr15 37975888 37976178 -47719576 - AluSx SINE Alu -22 290 1 1676 244 73 23 chr15 37976374 37976891 -47718863 + REP3 LTR ERV 2 544 -18 1582 186 27 72 chr15 37976916 37977319 -47718435 - MLT1B LTR MaLR -5 385 1 386 265 49 81 chr15 37977742 37977927 -47717827 - MIR3 SINE MIR -29 179 1 2221 150 31 0 chr15 37978277 37978630 -47717124 - MER47A DNA MER2_type 0 366 3 249 33 0 0 chr15 37979523 37979553 -47716201 + (TC)n Simple_repeat Simple_repeat 2 31 0 465 287 66 89 chr15 37979635 37979893 -47715861 + L2 LINE L2 3020 3271 -1 451 182 169 26 chr15 37980922 37980983 -47714771 + MER5B DNA MER1_type 3 54 -124 2604 40 0 0 chr15 37980983 37981281 -47714473 + AluY SINE Alu 1 298 -13 451 182 169 26 chr15 37981281 37981373 -47714381 + MER5B DNA MER1_type 54 178 0 265 328 157 0 chr15 37981386 37981520 -47714234 + MIR SINE MIR 98 252 -10 1052 262 180 28 chr15 37981576 37982042 -47713712 - MER34 LTR ERV1 0 542 6 314 231 58 19 chr15 37982175 37982279 -47713475 - L1MA10 LINE L1 -2 6332 6225 25 31 0 0 chr15 37982512 37982544 -47713210 + AT_rich Low_complexity Low_complexity 1 32 0 2650 13 40 0 chr15 37982550 37982849 -47712905 + AluYa5 SINE Alu 1 311 0 204 236 174 38 chr15 37982898 37983050 -47712704 - MIR SINE MIR -73 189 10 408 316 75 27 chr15 37983602 37983789 -47711965 - MIR3 SINE MIR -12 196 1 291 253 155 90 chr15 37984537 37984904 -47710850 + MLT1J LTR MaLR 109 499 -12 462 308 65 22 chr15 37986596 37986781 -47708973 + MIR SINE MIR 20 212 -50 2376 117 15 63 chr15 37986892 37987286 -47708468 + THE1C LTR MaLR 1 375 0 262 182 34 125 chr15 37988465 37988553 -47707201 - MIR SINE MIR -65 143 68 208 260 52 26 chr15 37988680 37988757 -47706997 - MER5A DNA MER1_type -2 187 109 * 289 184 40 40 chr15 37988701 37988777 -47706977 + MER5B DNA MER1_type 25 100 -78 682 267 159 0 chr15 37988924 37989119 -47706635 + MIR SINE MIR 3 228 -34 424 273 85 59 chr15 37989393 37989664 -47706090 + L1ME3A LINE L1 4 281 -5838 621 306 82 44 chr15 37989827 37990390 -47705364 + L1ME3A LINE L1 496 1079 -5040 590 274 74 46 chr15 37990423 37990933 -47704821 + L1ME3A LINE L1 1149 1712 -4598 1350 270 48 81 chr15 37990938 37991927 -47703827 + L1ME3A LINE L1 5199 6145 -8 2030 132 16 7 chr15 37993625 37993928 -47701826 + AluSx SINE Alu 3 308 -4 242 279 244 65 chr15 37994126 37994327 -47701427 + MIR SINE MIR 8 244 -18 1243 210 18 15 chr15 37994449 37994721 -47701033 + MLT2C1 LTR ERVL 1 273 -124 945 225 51 21 chr15 37994777 37995013 -47700741 + MLT1B LTR MaLR 7 249 -141 244 109 31 141 chr15 37995039 37995103 -47700651 + MLT2B2 LTR ERVL 459 515 0 5735 215 60 32 chr15 37995104 37996622 -47699132 + L1MC3 LINE L1 6225 7785 0 887 236 20 10 chr15 37996628 37996831 -47698923 + MIR SINE MIR 58 262 0 265 208 99 69 chr15 37996906 37997007 -47698747 + Charlie7 DNA MER1_type 1 104 -2508 216 0 0 0 chr15 37997625 37997649 -47698105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 286 289 138 31 chr15 37997670 37997829 -47697925 + MIR SINE MIR 37 212 -50 218 175 0 0 chr15 37997923 37997963 -47697791 + (CA)n Simple_repeat Simple_repeat 2 41 0 324 257 59 89 chr15 37997994 37998231 -47697523 - HAL1 LINE L1 -33 2474 2245 229 290 0 0 chr15 37998573 37998635 -47697119 + CT-rich Low_complexity Low_complexity 4 65 0 809 260 98 20 chr15 37998792 37999088 -47696666 - HAL1 LINE L1 -695 1812 1494 295 94 0 0 chr15 37999276 37999325 -47696429 - L1PA10 LINE L1 -1 6167 6124 1969 138 3 7 chr15 37999548 37999845 -47695909 + AluJb SINE Alu 1 296 -16 192 236 73 0 chr15 38001354 38001409 -47694345 - MIR SINE MIR -152 110 52 231 297 0 0 chr15 38002246 38002310 -47693444 - HAL1 LINE L1 -198 2309 2246 222 311 172 0 chr15 38002440 38002562 -47693192 - MIR SINE MIR -31 231 89 203 290 121 8 chr15 38003216 38003340 -47692414 - L2 LINE L2 0 3313 3176 216 100 0 25 chr15 38003696 38003736 -47692018 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 248 226 103 75 chr15 38003775 38003866 -47691888 - HAL1 LINE L1 -1 2506 2408 2402 190 83 0 chr15 38003866 38004303 -47691451 + MLT2B1 LTR ERVL 1 483 -37 901 100 7 0 chr15 38004303 38004443 -47691311 + (TA)n Simple_repeat Simple_repeat 2 142 0 2402 190 83 0 chr15 38004443 38004485 -47691269 + MLT2B1 LTR ERVL 483 520 0 248 226 103 75 chr15 38004485 38004539 -47691215 - HAL1 LINE L1 -99 2408 2357 1046 246 78 74 chr15 38004583 38005080 -47690674 + MLT1H LTR MaLR 12 510 -39 2225 112 0 29 chr15 38005081 38005394 -47690360 + AluY SINE Alu 1 304 -7 286 178 0 68 chr15 38005409 38005482 -47690272 - HAL1 LINE L1 -204 2303 2236 2350 277 27 9 chr15 38005714 38006457 -47689297 - L1ME3A LINE L1 -5 6148 5393 1237 265 112 32 chr15 38006507 38007123 -47688631 - L1ME3A LINE L1 -1786 4343 3679 204 308 0 0 chr15 38008455 38008507 -47687247 + CT-rich Low_complexity Low_complexity 3 54 0 460 304 38 6 chr15 38008507 38008665 -47687089 - L1ME3A LINE L1 -5954 165 3 21 36 0 0 chr15 38009109 38009137 -47686617 + AT_rich Low_complexity Low_complexity 1 28 0 255 61 0 0 chr15 38009751 38009784 -47685970 + (CA)n Simple_repeat Simple_repeat 1 33 0 2090 116 10 0 chr15 38010498 38010791 -47684963 + AluSq SINE Alu 1 296 -17 226 250 0 15 chr15 38010791 38010859 -47684895 - L1MC4 LINE L1 -1336 6706 6640 234 194 0 0 chr15 38010886 38010953 -47684801 + (TA)n Simple_repeat Simple_repeat 1 67 0 504 32 0 0 chr15 38010961 38011023 -47684731 + (CA)n Simple_repeat Simple_repeat 2 63 0 271 263 72 77 chr15 38011047 38011241 -47684513 - MLT1J LTR MaLR -30 481 289 338 245 74 42 chr15 38011316 38011486 -47684268 - MLT1J LTR MaLR -298 180 5 697 191 15 37 chr15 38011544 38011680 -47684074 - FLAM_A SINE Alu 0 133 1 309 166 29 101 chr15 38012451 38012590 -47683164 - L1MEc LINE L1 -3103 3112 2984 374 192 16 80 chr15 38012635 38012693 -47683061 - L1ME3A LINE L1 -10 6160 6113 2024 87 0 19 chr15 38012693 38012958 -47682796 + AluSc SINE Alu 44 303 -6 374 192 16 80 chr15 38012958 38013024 -47682730 - L1ME3A LINE L1 -57 6113 6044 600 261 130 46 chr15 38013028 38013550 -47682204 - L1MEc LINE L1 -4092 2304 1739 180 0 0 0 chr15 38013567 38013587 -47682167 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1950 120 0 21 chr15 38013589 38013873 -47681881 - AluSx SINE Alu -32 280 3 248 246 15 0 chr15 38014144 38014209 -47681545 - L1ME3A LINE L1 -61 6109 6044 600 261 130 46 chr15 38014213 38014735 -47681019 - L1MEd LINE L1 -4092 2304 1739 180 0 0 0 chr15 38014752 38014772 -47680982 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2062 105 0 21 chr15 38014774 38015060 -47680694 - AluSx SINE Alu -32 280 1 467 222 97 35 chr15 38016037 38016181 -47679573 - LTR41 LTR ERVL -110 663 511 508 244 153 16 chr15 38016359 38016601 -47679153 - LTR41 LTR ERVL -498 275 1 560 279 82 41 chr15 38016617 38017286 -47678468 - L1MEd LINE L1 -738 1838 1028 418 219 144 109 chr15 38017731 38017987 -47677767 - LTR41 LTR ERVL -6 767 503 716 230 40 6 chr15 38018196 38018370 -47677384 - LTR41 LTR ERVL -588 185 6 787 321 41 6 chr15 38018444 38018787 -47676967 - L1MEd LINE L1 -5718 487 133 1854 175 7 0 chr15 38018876 38019185 -47676569 - AluJo SINE Alu -1 311 1 2147 149 28 50 chr15 38020264 38020661 -47675093 + MLT1B LTR MaLR 1 388 -2 1010 175 97 5 chr15 38022169 38022386 -47673368 - L1MB3 LINE L1 -2 6181 5945 2518 49 0 0 chr15 38022398 38022683 -47673071 - AluY SINE Alu -13 298 14 696 251 47 19 chr15 38022695 38022979 -47672775 - L1MD2 LINE L1 -55 6111 5808 318 312 47 42 chr15 38023107 38023322 -47672432 - L1ME2 LINE L1 -223 5947 5732 394 194 65 0 chr15 38023610 38023765 -47671989 + GA-rich Low_complexity Low_complexity 4 168 0 561 225 14 86 chr15 38025064 38025172 -47670582 - MER112 DNA MER1_type -7 253 166 207 0 0 0 chr15 38025172 38025195 -47670559 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 561 225 14 86 chr15 38025195 38025295 -47670459 - MER112 DNA MER1_type -94 166 60 225 129 0 0 chr15 38025298 38025329 -47670425 - LTR16A1 LTR ERVL 0 457 427 402 214 175 49 chr15 38025365 38025650 -47670104 - LTR16A1 LTR ERVL -96 361 41 257 229 174 21 chr15 38026451 38026595 -47669159 - L2 LINE L2 -6 3307 3142 680 253 117 36 chr15 38026699 38026980 -47668774 + MLT1I LTR MaLR 106 409 0 186 292 0 0 chr15 38027065 38027113 -47668641 - L2 LINE L2 -257 3056 3009 211 250 62 38 chr15 38027219 38027299 -47668455 - MIR SINE MIR -161 101 20 436 197 128 0 chr15 38027318 38027435 -47668319 - MER96 DNA MER1_type? -19 156 25 425 272 114 0 chr15 38027436 38027550 -47668204 + MER96 DNA MER1_type? 49 175 0 190 241 44 117 chr15 38027999 38028109 -47667645 - MIR SINE MIR -14 248 148 2758 94 0 0 chr15 38028109 38028461 -47667293 - THE1A LTR MaLR 0 355 4 190 241 44 117 chr15 38028461 38028487 -47667267 - MIR SINE MIR -114 148 122 27 29 0 0 chr15 38028908 38028942 -47666812 + AT_rich Low_complexity Low_complexity 1 34 0 2464 210 98 23 chr15 38028952 38029229 -47666525 - L1ME1 LINE L1 -80 6104 5849 1476 189 15 109 chr15 38029229 38029632 -47666122 + MLT1A1 LTR MaLR 1 365 0 2464 210 98 23 chr15 38029632 38030088 -47665666 - L1ME1 LINE L1 -335 5849 5310 1125 169 5 0 chr15 38030094 38030278 -47665476 - AluSg/x SINE Alu -7 305 121 1122 210 41 24 chr15 38031116 38031411 -47664343 - MLT1D LTR MaLR 0 505 206 1680 223 120 41 chr15 38031467 38032168 -47663586 - HAL1 LINE L1 -909 1598 843 1608 269 59 18 chr15 38032196 38032758 -47662996 - HAL1 LINE L1 -1827 680 96 1900 200 101 24 chr15 38032833 38033297 -47662457 - MLT1D LTR MaLR 0 505 6 1577 208 49 59 chr15 38033556 38034027 -47661727 + MLT1C LTR MaLR 1 466 -1 350 305 106 0 chr15 38034220 38034361 -47661393 - MIR SINE MIR -8 254 99 1144 119 149 5 chr15 38036140 38036341 -47659413 - MER30 DNA MER1_type 0 230 1 250 263 158 0 chr15 38036449 38036525 -47659229 + MIR3 SINE MIR 114 201 -7 217 190 0 114 chr15 38036992 38037071 -47658683 + MIR SINE MIR 65 134 -128 295 265 29 10 chr15 38037092 38037194 -47658560 - MER5A DNA MER1_type -22 167 64 2178 107 10 3 chr15 38037206 38037515 -47658239 - L1PB1 LINE L1 -12 6139 5829 2796 210 0 0 chr15 38037516 38038087 -47657667 + L1 LINE L1 4434 5004 -1142 2146 116 0 3 chr15 38039010 38039304 -47656450 - AluSx SINE Alu -19 293 1 1202 252 101 21 chr15 38039306 38039734 -47656020 + MER74A LTR ERVL 12 473 -85 890 177 88 70 chr15 38040302 38040517 -47655237 - MER20 DNA MER1_type 0 219 1 182 259 69 0 chr15 38041116 38041174 -47654580 + MER5A DNA MER1_type 29 90 -99 280 267 13 0 chr15 38042834 38042909 -47652845 - MLT2E LTR ERVL -1 627 552 1325 295 131 4 chr15 38042909 38043435 -47652319 - MLT2E LTR ERVL -35 593 1 419 308 58 17 chr15 38044398 38044570 -47651184 - MIR SINE MIR 0 262 84 453 273 86 5 chr15 38044608 38044795 -47650959 + MIR SINE MIR 49 250 -12 1806 41 0 0 chr15 38045604 38045822 -47649932 + L1PA4 LINE L1 5938 6155 0 228 296 16 56 chr15 38046026 38046151 -47649603 + MIR SINE MIR 87 206 -56 790 287 13 4 chr15 38046540 38046770 -47648984 + MIR SINE MIR 10 241 -21 2157 105 3 20 chr15 38047188 38047494 -47648260 - AluSx SINE Alu -11 301 1 470 290 32 74 chr15 38048796 38048987 -47646767 - MIR SINE MIR -27 235 52 1484 141 7 44 chr15 38048987 38049257 -47646497 - L1MB8 LINE L1 -3 6175 5916 470 290 32 74 chr15 38049257 38049282 -47646472 - MIR SINE MIR -210 52 28 228 67 0 0 chr15 38050081 38050111 -47645643 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 802 127 21 7 chr15 38050232 38050374 -47645380 - MER9 LTR ERVK 0 511 368 228 67 0 0 chr15 38051019 38051049 -47644705 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 3436 118 11 36 chr15 38051170 38051377 -47644377 - MER9 LTR ERVK 0 511 300 2452 82 0 0 chr15 38051377 38051680 -47644074 - AluY SINE Alu -8 303 1 3436 118 11 36 chr15 38051680 38051996 -47643758 - MER9 LTR ERVK -211 300 1 333 0 0 0 chr15 38052254 38052291 -47643463 + (CA)n Simple_repeat Simple_repeat 1 37 0 2444 133 37 7 chr15 38052712 38053117 -47642637 - MSTA LTR MaLR -11 417 1 224 299 21 21 chr15 38053259 38053356 -47642398 + MIR SINE MIR 166 262 0 219 36 0 0 chr15 38053592 38053620 -47642134 + (TG)n Simple_repeat Simple_repeat 2 29 0 1951 132 54 0 chr15 38054366 38054662 -47641092 - AluSx SINE Alu 0 312 1 359 267 92 17 chr15 38054801 38054921 -47640833 - MIR3 SINE MIR -9 199 71 409 284 172 45 chr15 38055288 38055707 -47640047 - HAL1 LINE L1 0 2507 2036 1046 280 116 7 chr15 38055773 38056237 -47639517 - HAL1 LINE L1 -590 1917 1403 597 301 97 28 chr15 38056299 38056515 -47639239 + MIR SINE MIR 11 241 -21 324 300 30 10 chr15 38057387 38057487 -47638267 + MIR SINE MIR 21 122 -140 406 207 284 0 chr15 38057551 38057667 -47638087 + MIR SINE MIR 114 262 0 920 270 45 51 chr15 38057668 38058201 -47637553 - HAL1 LINE L1 -1190 1317 788 229 326 0 23 chr15 38058573 38058659 -47637095 - HAL1 LINE L1 -1988 519 436 318 221 0 93 chr15 38058839 38058925 -47636829 - HAL1 LINE L1 -2334 173 96 898 140 65 48 chr15 38059345 38059531 -47636223 + MER53 DNA DNA 1 189 0 347 228 22 0 chr15 38060852 38060944 -47634810 + MER81 DNA DNA 20 113 -1 318 293 138 24 chr15 38061985 38062152 -47633602 + MIR SINE MIR 26 211 -51 21 0 0 0 chr15 38064096 38064117 -47631637 + AT_rich Low_complexity Low_complexity 1 21 0 2287 103 0 3 chr15 38064117 38064417 -47631337 + AluSg SINE Alu 1 299 -11 211 265 0 0 chr15 38064583 38064632 -47631122 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 274 261 31 77 chr15 38064971 38065166 -47630588 + LTR67 LTR ERVL 364 549 -8 381 309 29 59 chr15 38066514 38066718 -47629036 - MLT1K LTR MaLR -193 395 198 277 271 14 14 chr15 38066857 38066927 -47628827 - L2 LINE L2 -11 3302 3233 957 259 159 5 chr15 38067341 38067712 -47628042 - LTR16A LTR ERVL -5 445 18 253 339 0 28 chr15 38067729 38067838 -47627916 + MIR3 SINE MIR 93 198 -10 536 233 31 0 chr15 38067920 38068049 -47627705 + L1MC4 LINE L1 5809 5941 -1867 405 0 0 0 chr15 38068049 38068094 -47627660 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr15 38068203 38068227 -47627527 + AT_rich Low_complexity Low_complexity 1 24 0 7514 215 62 29 chr15 38068289 38068353 -47627401 + L1PA16 LINE L1 3722 3782 -2384 2120 107 24 0 chr15 38068353 38068478 -47627276 + AluSq SINE Alu 1 122 -191 225 65 0 0 chr15 38068478 38068509 -47627245 + (CA)n Simple_repeat Simple_repeat 2 32 0 2120 107 24 0 chr15 38068509 38068674 -47627080 + AluSq SINE Alu 122 298 -15 7514 215 62 29 chr15 38068674 38071282 -47624472 + L1PA16 LINE L1 3782 6302 136 1734 104 133 4 chr15 38071282 38071552 -47624202 + AluSg SINE Alu 1 305 -5 7514 215 62 29 chr15 38071552 38073140 -47622614 + L1PA16 LINE L1 6301 6164 -2 2878 118 49 0 chr15 38071724 38072132 -47623622 + MSTA LTR MaLR 1 428 0 1743 238 84 124 chr15 38072132 38072229 -47623525 + L1MC4 LINE L1 6833 6932 -1110 2570 68 0 0 chr15 38072229 38072538 -47623216 - AluY SINE Alu -2 309 1 1743 238 84 124 chr15 38072538 38073575 -47622179 + L1MC4 LINE L1 6932 7911 -131 354 143 0 0 chr15 38073599 38073662 -47622092 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 386 195 73 41 chr15 38073668 38073791 -47621963 + L1MC4 LINE L1 7916 8042 0 190 420 15 15 chr15 38073812 38073943 -47621811 - MIR3 SINE MIR -13 195 65 315 219 110 12 chr15 38075385 38075467 -47620287 + Charlie8 DNA MER1_type 103 192 -2225 244 310 134 7 chr15 38075705 38075847 -47619907 - MIR SINE MIR -54 208 49 293 259 30 82 chr15 38076006 38076141 -47619613 + MIR3 SINE MIR 69 196 -12 473 243 41 99 chr15 38076453 38076698 -47619056 - MIR3 SINE MIR -11 251 49 388 321 48 37 chr15 38076805 38077141 -47618613 - L3 LINE CR1 -2 1575 1119 410 193 48 105 chr15 38077141 38077344 -47618410 + MLT1H LTR MaLR 19 257 -292 2495 94 0 0 chr15 38077344 38077653 -47618101 + AluSg SINE Alu 1 309 -1 410 193 48 105 chr15 38077653 38077688 -47618066 + MLT1H LTR MaLR 257 292 -257 356 83 0 0 chr15 38077788 38077836 -47617918 - MLT2A1 LTR ERVL -7 437 390 217 269 15 0 chr15 38077836 38077903 -47617851 + (TA)n Simple_repeat Simple_repeat 1 68 0 300 146 0 0 chr15 38077903 38077951 -47617803 - MLT2A2 LTR ERVL 0 453 406 * 369 62 0 0 chr15 38077945 38077993 -47617761 + MLT2A2 LTR ERVL 406 453 0 334 228 103 53 chr15 38077994 38078171 -47617583 - MLT1E2 LTR MaLR -13 542 358 351 0 0 0 chr15 38078193 38078232 -47617522 + (TA)n Simple_repeat Simple_repeat 2 40 0 2721 90 3 0 chr15 38078364 38078718 -47617036 - MLT2A1 LTR ERVL -89 355 1 16528 66 6 2 chr15 38078718 38081812 -47613942 - HERVL-A1 LTR ERVL 0 5654 1590 1385 73 0 0 chr15 38081789 38081967 -47613787 - HERVL LTR ERVL -5476 178 1 * 2154 127 56 12 chr15 38081967 38082307 -47613447 - THE1A LTR MaLR 0 355 1 593 335 129 49 chr15 38082464 38082614 -47613140 - L3 LINE CR1 -609 968 832 2352 66 0 60 chr15 38082614 38082932 -47612822 - AluY SINE Alu -12 299 1 593 335 129 49 chr15 38082932 38083376 -47612378 - L3 LINE CR1 -745 832 326 724 279 60 17 chr15 38083435 38083668 -47612086 + MIR SINE MIR 20 262 0 32 43 0 0 chr15 38084899 38084945 -47610809 + AT_rich Low_complexity Low_complexity 1 46 0 220 267 0 17 chr15 38085026 38085086 -47610668 + CT-rich Low_complexity Low_complexity 3 61 0 23 0 0 0 chr15 38085375 38085398 -47610356 + AT_rich Low_complexity Low_complexity 1 23 0 232 311 129 0 chr15 38085511 38085643 -47610111 - L1MC/D LINE L1 -2048 5760 5612 572 237 15 0 chr15 38085719 38085850 -47609904 - L1MB7 LINE L1 -16 6404 6272 4057 180 22 33 chr15 38085944 38086802 -47608952 - L1MB7 LINE L1 -146 6274 5439 2069 133 7 3 chr15 38086802 38087110 -47608644 - AluSx SINE Alu -3 309 1 4057 180 22 33 chr15 38087110 38087756 -47607998 - L1MB7 LINE L1 -981 5439 4787 531 213 37 22 chr15 38087756 38087912 -47607842 - MLT1D LTR MaLR 0 505 240 * 943 289 9 33 chr15 38087887 38088216 -47607538 - MLT1E2 LTR MaLR -305 321 1 877 205 30 34 chr15 38088750 38089013 -47606741 - L1MB7 LINE L1 -1589 4793 4532 1510 220 17 6 chr15 38089073 38089419 -47606335 - L1MB7 LINE L1 -4512 1872 1523 1197 254 11 37 chr15 38089427 38089778 -47605976 - L1ME2 LINE L1 -15 6149 5808 * 40947 69 3 11 chr15 38089762 38095964 -47599790 - L1PA5 LINE L1 0 6154 4 2274 223 74 58 chr15 38095969 38097201 -47598553 - L1ME2 LINE L1 -342 5822 4571 478 280 176 5 chr15 38097524 38097717 -47598037 - MIR SINE MIR -36 226 1 476 176 165 0 chr15 38098735 38098826 -47596928 + FLAM_A SINE Alu 1 106 -36 1147 188 21 71 chr15 38098866 38099206 -47596548 + L1MC5 LINE L1 7606 7928 -33 341 286 152 0 chr15 38099496 38099601 -47596153 - MIR SINE MIR -106 156 36 800 267 202 23 chr15 38099608 38100254 -47595500 - L2 LINE L2 -3 3310 2508 376 224 26 0 chr15 38100477 38100553 -47595201 - MER81 DNA DNA -36 78 1 294 271 82 8 chr15 38100564 38100686 -47595068 + MIR SINE MIR 51 181 -81 258 244 12 49 chr15 38101225 38101307 -47594447 - ORSL DNA AcHobo -196 79 1 182 118 29 0 chr15 38101480 38101514 -47594240 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 279 0 0 0 chr15 38101869 38101900 -47593854 + (CA)n Simple_repeat Simple_repeat 2 32 0 228 35 0 0 chr15 38102159 38102188 -47593566 + (TG)n Simple_repeat Simple_repeat 2 30 0 1092 160 22 0 chr15 38102921 38103102 -47592652 - MER20 DNA MER1_type 0 219 35 253 234 62 0 chr15 38103239 38103303 -47592451 - MER5B DNA MER1_type -5 173 106 253 195 0 78 chr15 38103286 38103363 -47592391 + MER5B DNA MER1_type 108 178 0 406 287 23 16 chr15 38104077 38104206 -47591548 + MIR SINE MIR 83 212 -50 1049 156 117 54 chr15 38108466 38108671 -47587083 - MER20 DNA MER1_type -1 218 1 251 295 63 21 chr15 38108684 38108779 -47586975 + L2 LINE L2 3149 3247 -25 * 406 259 60 0 chr15 38108778 38108894 -47586860 - L2 LINE L2 0 3313 3191 202 333 0 0 chr15 38109509 38109566 -47586188 + L2 LINE L2 3254 3310 -3 180 77 0 0 chr15 38109760 38109786 -47585968 + (TC)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr15 38109788 38109816 -47585938 + (CA)n Simple_repeat Simple_repeat 1 28 0 307 256 51 0 chr15 38110436 38110514 -47585240 - MIR SINE MIR -179 83 2 247 329 58 0 chr15 38110805 38110960 -47584794 + L1ME LINE L1 5574 5737 -384 1889 152 110 3 chr15 38111105 38111415 -47584339 + MER2 DNA MER2_type 1 343 -1 790 300 73 0 chr15 38111547 38111780 -47583974 - MIR SINE MIR 0 262 13 33 25 0 0 chr15 38111793 38111833 -47583921 + AT_rich Low_complexity Low_complexity 1 40 0 205 273 36 0 chr15 38112030 38112085 -47583669 + L2 LINE L2 3257 3313 0 1812 114 24 4 chr15 38112453 38112708 -47583046 + AluSg SINE Alu 37 296 -14 1594 180 4 0 chr15 38112821 38113088 -47582666 - AluJo SINE Alu -44 268 1 464 304 43 14 chr15 38113159 38113366 -47582388 - MIR SINE MIR -37 225 13 183 367 0 0 chr15 38113381 38113441 -47582313 + L2 LINE L2 3243 3302 -11 1861 145 19 22 chr15 38115009 38115320 -47580434 - AluJo SINE Alu -2 310 1 485 314 38 6 chr15 38115470 38115629 -47580125 - MIR3 SINE MIR -25 183 20 645 292 116 17 chr15 38116983 38117216 -47578538 - MIR SINE MIR 0 262 7 21 36 0 0 chr15 38117269 38117297 -47578457 + AT_rich Low_complexity Low_complexity 1 28 0 363 44 0 0 chr15 38117440 38117485 -47578269 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2238 85 14 3 chr15 38117933 38118228 -47577526 + AluSq SINE Alu 1 298 -15 1001 119 0 0 chr15 38118228 38118362 -47577392 + AluSg/x SINE Alu 134 267 -45 180 0 0 0 chr15 38118366 38118386 -47577368 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2223 116 7 0 chr15 38118617 38118910 -47576844 + AluSc SINE Alu 1 295 -14 182 319 14 42 chr15 38119173 38119245 -47576509 + MIR3 SINE MIR 3 72 -136 450 253 0 0 chr15 38120658 38120741 -47575013 + AluJb SINE Alu 202 284 -28 2048 128 0 30 chr15 38120989 38121293 -47574461 + AluJb SINE Alu 1 295 -17 2114 122 13 10 chr15 38121295 38121606 -47574148 + AluSx SINE Alu 1 312 0 320 268 93 60 chr15 38121654 38121837 -47573917 + MIR SINE MIR 46 234 -28 280 311 67 50 chr15 38122294 38122474 -47573280 + MIR SINE MIR 49 231 -31 818 220 136 62 chr15 38122795 38122934 -47572820 + MER102b DNA MER1_type 1 128 -1300 573 133 11 0 chr15 38122934 38123024 -47572730 - L1MD1 LINE L1 -1 6241 6151 818 220 136 62 chr15 38123024 38123193 -47572561 + MER102b DNA MER1_type 128 332 -9 203 358 29 44 chr15 38123372 38123509 -47572245 + L2 LINE L2 3133 3267 -5 268 304 36 9 chr15 38123660 38123772 -47571982 + L1MC4a LINE L1 5812 5926 -1882 1006 269 165 3 chr15 38126337 38126646 -47569108 - MLT1G1 LTR MaLR 0 595 237 808 365 78 9 chr15 38126741 38127163 -47568591 - L3 LINE CR1 -60 1517 1067 339 145 0 53 chr15 38128683 38128759 -47566995 - LTR49 LTR ERV1 -68 527 456 5860 155 26 32 chr15 38128871 38129950 -47565804 + L1MA4 LINE L1 5212 6299 -1 257 291 0 0 chr15 38130318 38130373 -47565381 + L2 LINE L2 3214 3268 -4 542 262 30 91 chr15 38130751 38131014 -47564740 - MIR SINE MIR 0 262 16 1031 211 0 0 chr15 38132040 38132220 -47563534 + LTR32 LTR ERVL 172 351 -120 22 0 0 0 chr15 38137114 38137136 -47558618 + AT_rich Low_complexity Low_complexity 1 22 0 376 308 8 0 chr15 38138591 38138708 -47557046 + MER102a DNA MER1_type 186 303 -27 510 282 153 5 chr15 38139191 38139407 -47556347 - MIR SINE MIR 0 262 15 561 164 77 0 chr15 38140452 38140556 -47555198 - MER103 DNA DNA -43 123 12 267 190 0 0 chr15 38140856 38140914 -47554840 + (TG)n Simple_repeat Simple_repeat 2 59 0 270 236 137 15 chr15 38140951 38141085 -47554669 - L1ME LINE L1 -232 5889 5740 1240 281 83 41 chr15 38142027 38143041 -47552713 + L1MEd LINE L1 574 1725 -765 21 0 0 0 chr15 38143268 38143289 -47552465 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 57 0 chr15 38143295 38143577 -47552177 - AluSx SINE Alu -14 298 1 2396 99 0 10 chr15 38143751 38144064 -47551690 - AluSg SINE Alu 0 310 1 370 337 58 0 chr15 38144305 38144563 -47551191 + L1ME LINE L1 4777 5049 -1097 21 0 0 0 chr15 38144584 38144605 -47551149 + AT_rich Low_complexity Low_complexity 1 21 0 623 290 89 32 chr15 38144620 38145022 -47550732 + L1ME LINE L1 5297 5720 -412 22 70 0 0 chr15 38145146 38145189 -47550565 + AT_rich Low_complexity Low_complexity 1 43 0 386 236 188 14 chr15 38145239 38145383 -47550371 + MIR SINE MIR 5 173 -89 480 341 111 40 chr15 38151892 38152826 -47542928 - L2 LINE L2 0 3313 2303 328 323 8 31 chr15 38153237 38153364 -47542390 - L2 LINE L2 -1 3312 3189 258 174 43 0 chr15 38154120 38154166 -47541588 - MER5A DNA MER1_type -73 116 69 2220 105 6 19 chr15 38154773 38155087 -47540667 + AluSx SINE Alu 1 310 -2 390 221 61 8 chr15 38155223 38155354 -47540400 - L1MC4a LINE L1 -1983 5825 5688 556 301 105 43 chr15 38155536 38155974 -47539780 - L1MC4a LINE L1 -743 5403 4939 395 333 42 42 chr15 38156150 38156462 -47539292 - L1MC4a LINE L1 -1586 4560 4249 2288 95 0 7 chr15 38156552 38156846 -47538908 + AluY SINE Alu 1 292 -19 41010 32 21 1 chr15 38157038 38163068 -47532686 - L1PA2 LINE L1 0 6155 1 321 273 87 57 chr15 38163111 38163477 -47532277 - L1MC4a LINE L1 -2181 3965 3589 302 293 17 26 chr15 38163713 38163829 -47531925 - L1MC4a LINE L1 -2845 3301 3187 1691 226 107 48 chr15 38163875 38164207 -47531547 + MLT2F LTR ERVL 46 424 -239 1576 189 54 24 chr15 38164207 38164540 -47531214 + MER61A LTR ERV1 1 343 0 1691 226 107 48 chr15 38164540 38164750 -47531004 + MLT2F LTR ERVL 424 620 -43 303 279 86 14 chr15 38164868 38165008 -47530746 - L1MC4a LINE L1 -3733 2413 2264 963 123 130 0 chr15 38165149 38165311 -47530443 - AluSg/x SINE Alu -3 307 125 1074 278 82 41 chr15 38165995 38166829 -47528925 + L1ME3A LINE L1 5086 5949 -221 206 371 34 41 chr15 38167149 38167184 -47528570 + L2 LINE L2 2689 2723 -591 2253 114 0 0 chr15 38167184 38167501 -47528253 - AluSq SINE Alu 0 313 1 206 371 34 41 chr15 38167501 38167756 -47527998 + L2 LINE L2 2723 2977 -337 1347 38 0 0 chr15 38168020 38168180 -47527574 + L1PA3 LINE L1 5996 6155 0 2090 133 10 0 chr15 38168852 38169145 -47526609 - AluSx SINE Alu -16 296 1 349 348 17 0 chr15 38169189 38169307 -47526447 - MIR SINE MIR -61 147 28 26 0 0 0 chr15 38170442 38170468 -47525286 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr15 38171190 38171221 -47524533 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 38171313 38171334 -47524420 + AT_rich Low_complexity Low_complexity 1 21 0 273 292 85 46 chr15 38171341 38171471 -47524283 - L2 LINE L2 0 3272 3138 227 342 103 54 chr15 38171641 38171794 -47523960 - MIR3 SINE MIR 0 208 43 2169 136 0 3 chr15 38171794 38172103 -47523651 - AluSg SINE Alu -2 308 1 227 342 103 54 chr15 38172103 38172133 -47523621 - MIR3 SINE MIR -165 43 16 597 294 15 30 chr15 38173379 38173580 -47522174 + MIR SINE MIR 8 205 -57 183 80 0 0 chr15 38173757 38173782 -47521972 + (ATTAG)n Simple_repeat Simple_repeat 4 28 0 318 149 0 40 chr15 38173984 38174058 -47521696 + MER88 LTR ERVL 79 149 -315 * 1078 249 43 77 chr15 38174008 38174141 -47521613 - MER74B LTR ERVL -82 540 404 1788 145 3 40 chr15 38174141 38174444 -47521310 - AluJo SINE Alu -16 296 5 1078 249 43 77 chr15 38174444 38174801 -47520953 - MER74B LTR ERVL -218 404 67 269 364 62 6 chr15 38174809 38174971 -47520783 - MIR SINE MIR -58 204 34 4473 69 41 0 chr15 38174975 38175556 -47520198 + LTR14B LTR ERVK 4 608 0 204 394 31 19 chr15 38176227 38176387 -47519367 + L2 LINE L2 2350 2511 -803 1834 204 148 0 chr15 38176763 38177203 -47518551 - MLT1D LTR MaLR 0 505 1 1677 184 3 3 chr15 38178051 38178387 -47517367 + AluJb SINE Alu 1 336 0 259 366 91 7 chr15 38178899 38179186 -47516568 + L2 LINE L2 2365 2675 -639 1079 291 59 18 chr15 38179399 38179788 -47515966 + LTR16C LTR ERVL 87 491 0 403 354 27 42 chr15 38180228 38180488 -47515266 + L2 LINE L2 2804 3059 -213 2072 132 4 0 chr15 38180735 38181041 -47514713 + AluSx SINE Alu 1 307 0 1057 196 0 16 chr15 38182034 38182223 -47513531 - AluJo SINE Alu -125 187 2 670 293 22 0 chr15 38182413 38182594 -47513160 - MIR SINE MIR -50 212 28 1477 184 10 35 chr15 38183281 38183589 -47512165 + AluJb SINE Alu 1 301 0 1262 238 38 30 chr15 38183602 38183968 -47511786 + L1MB7 LINE L1 6 374 -6168 * 3959 209 40 18 chr15 38183963 38185120 -47510634 + L1MB7 LINE L1 690 1875 -4771 1134 207 61 23 chr15 38185220 38185742 -47510012 + L1MB7 LINE L1 2308 2846 -3798 1686 190 11 25 chr15 38185742 38186085 -47509669 + MLT1A1 LTR MaLR 1 478 -27 1567 242 36 13 chr15 38186590 38187115 -47508639 + L1MB7 LINE L1 2841 3377 -3267 647 130 17 9 chr15 38187123 38187238 -47508516 - L1PA16 LINE L1 -8 6158 6043 1546 145 52 50 chr15 38187347 38187775 -47507979 + L1PA8A LINE L1 5498 5879 -252 * 4481 207 65 21 chr15 38187768 38188366 -47507388 + L1MB7 LINE L1 3362 3933 -2711 262 0 53 0 chr15 38188366 38188404 -47507350 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4481 207 65 21 chr15 38188404 38189209 -47506545 + L1MB7 LINE L1 3933 4826 -1818 824 48 10 0 chr15 38189209 38189312 -47506442 + AluY SINE Alu 1 104 -207 1405 91 0 5 chr15 38189412 38189599 -47506155 + AluY SINE Alu 111 296 -15 3794 188 60 19 chr15 38189599 38190717 -47505037 + L1MB7 LINE L1 4819 6035 -647 2564 116 3 13 chr15 38190717 38191096 -47504658 + THE1C LTR MaLR 1 375 0 3794 188 60 19 chr15 38191096 38191751 -47504003 + L1MB7 LINE L1 6035 6661 -21 359 276 105 0 chr15 38192371 38192476 -47503278 + MIR3 SINE MIR 67 182 -26 992 264 34 4 chr15 38192494 38192729 -47503025 + MIR SINE MIR 21 262 0 2368 86 3 3 chr15 38192964 38193267 -47502487 - AluY SINE Alu -8 303 1 367 130 29 0 chr15 38193675 38193744 -47502010 - MER69 DNA AcHobo -9 2517 2447 1137 260 103 32 chr15 38193752 38194560 -47501194 - L1MEd LINE L1 -981 5148 4284 1784 273 88 13 chr15 38194716 38195626 -47500128 - L1MEd LINE L1 -2075 4054 3077 475 299 69 13 chr15 38195715 38195958 -47499796 - MLT1H1 LTR MaLR -252 297 1 947 293 49 17 chr15 38195959 38196631 -47499123 - L1ME LINE L1 -467 5695 5004 343 253 123 13 chr15 38196786 38197015 -47498739 - L1 LINE L1 -1155 6410 6152 240 280 39 9 chr15 38197027 38197259 -47498495 - L1MEd LINE L1 -3123 3006 2768 385 288 81 81 chr15 38197319 38197604 -47498150 - L1MEd LINE L1 -3550 2579 2295 283 273 99 43 chr15 38197635 38197939 -47497815 - L1MEd LINE L1 -4895 1224 904 23 78 0 0 chr15 38197942 38197993 -47497761 + AT_rich Low_complexity Low_complexity 1 51 0 183 271 0 0 chr15 38198040 38198110 -47497644 + (TA)n Simple_repeat Simple_repeat 1 70 0 260 270 60 10 chr15 38198203 38198303 -47497451 + Tigger3(Golem) DNA MER2_type 3 2797 -232 2865 196 62 7 chr15 38198303 38199188 -47496566 - L1 LINE L1 -3283 4282 3356 1335 237 63 6 chr15 38199173 38199536 -47496218 - L1MC4 LINE L1 -176 7866 7483 * 245 271 24 12 chr15 38199869 38199954 -47495800 + L2 LINE L2 1882 1967 -1347 2024 168 69 11 chr15 38200016 38200450 -47495304 - L1MB8 LINE L1 -2 6176 5718 214 333 88 35 chr15 38200876 38200990 -47494764 + L2 LINE L2 3138 3257 -15 963 252 75 49 chr15 38201528 38202029 -47493725 + L1MC5 LINE L1 7268 7790 -171 2249 88 27 0 chr15 38202029 38202324 -47493430 + AluSg SINE Alu 1 303 -7 963 252 75 49 chr15 38202324 38202449 -47493305 + L1MC5 LINE L1 7790 7910 -51 545 321 42 46 chr15 38202512 38202749 -47493005 - MIR SINE MIR -13 249 14 1356 229 20 7 chr15 38203957 38204250 -47491504 + AluJo SINE Alu 1 297 -15 1926 165 15 69 chr15 38204595 38205002 -47490752 + MLT1B LTR MaLR 6 390 0 218 184 0 0 chr15 38205137 38205175 -47490579 + (CATA)n Simple_repeat Simple_repeat 2 39 0 38 17 0 33 chr15 38205204 38205247 -47490507 + AT_rich Low_complexity Low_complexity 1 43 -15 2137 116 0 0 chr15 38205247 38205532 -47490222 - AluSx SINE Alu -27 285 1 38 17 0 33 chr15 38205532 38205548 -47490206 + AT_rich Low_complexity Low_complexity 43 58 0 189 107 0 0 chr15 38205574 38205602 -47490152 + (TAA)n Simple_repeat Simple_repeat 1 28 0 615 305 13 0 chr15 38205678 38205832 -47489922 - MIR SINE MIR -97 165 10 273 357 103 6 chr15 38206090 38206306 -47489448 + MIR SINE MIR 16 249 -13 4207 83 0 2 chr15 38206682 38207236 -47488518 + MER41A LTR ERV1 1 553 -1 368 331 81 107 chr15 38208005 38208464 -47487290 - L2 LINE L2 -1 3271 2825 292 226 140 11 chr15 38208481 38208574 -47487180 + MLT1G1 LTR MaLR 1 105 -490 * 558 242 19 25 chr15 38208570 38208731 -47487023 + MLT1G LTR MaLR 424 583 -7 22 35 0 0 chr15 38208767 38208796 -47486958 + AT_rich Low_complexity Low_complexity 1 29 0 198 274 55 14 chr15 38209342 38209415 -47486339 - MER5A DNA MER1_type -45 144 69 192 342 90 18 chr15 38209483 38209594 -47486160 - L2 LINE L2 -591 2723 2605 425 243 83 35 chr15 38212235 38212404 -47483350 + MER5B DNA MER1_type 2 178 0 280 159 0 0 chr15 38213051 38213095 -47482659 + L2 LINE L2 3262 3305 -8 496 123 0 12 chr15 38213574 38213655 -47482099 + MADE1 DNA Mariner 1 80 0 213 65 0 0 chr15 38218327 38218358 -47477396 + (T)n Simple_repeat Simple_repeat 1 31 0 591 232 197 0 chr15 38219152 38219294 -47476460 + MER58A DNA MER1_type 1 170 -54 207 0 0 0 chr15 38219467 38219490 -47476264 + (A)n Simple_repeat Simple_repeat 1 23 0 233 279 76 13 chr15 38219516 38219595 -47476159 + MIR SINE MIR 108 191 -71 1998 130 11 3 chr15 38219733 38220018 -47475736 + AluSq SINE Alu 1 287 -26 21 36 0 0 chr15 38220068 38220096 -47475658 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr15 38221370 38221418 -47474336 + AT_rich Low_complexity Low_complexity 1 48 0 49 18 0 0 chr15 38221975 38222031 -47473723 + AT_rich Low_complexity Low_complexity 1 56 0 184 371 72 0 chr15 38222094 38222191 -47473563 - L2 LINE L2 0 3272 3169 1142 271 41 74 chr15 38222608 38223192 -47472562 - L1ME3A LINE L1 -241 5929 5365 198 346 25 25 chr15 38224207 38224288 -47471466 + L2 LINE L2 3188 3268 -4 399 319 43 32 chr15 38224312 38224497 -47471257 - MIR SINE MIR -22 240 54 255 211 70 14 chr15 38226891 38226962 -47468792 + MIR3 SINE MIR 1 75 -133 210 286 10 51 chr15 38226939 38227037 -47468717 + L3 LINE CR1 616 709 -868 * 672 108 0 0 chr15 38227130 38227232 -47468522 + AluSg/x SINE Alu 207 308 -4 205 189 0 0 chr15 38228258 38228295 -47467459 + T-rich Low_complexity Low_complexity 5 41 0 22 0 0 0 chr15 38228310 38228332 -47467422 + AT_rich Low_complexity Low_complexity 1 22 0 503 229 86 6 chr15 38229163 38229338 -47466416 - MER53 DNA DNA 0 189 1 423 252 119 7 chr15 38230241 38230392 -47465362 - MIR SINE MIR -21 241 74 1192 183 73 65 chr15 38230484 38230840 -47464914 + L1ME1 LINE L1 5761 6276 -58 385 313 37 11 chr15 38232982 38233167 -47462587 - MIR SINE MIR -36 226 37 5876 78 82 1 chr15 38233854 38234687 -47461067 - L1PA7 LINE L1 -1 6153 5254 383 324 77 6 chr15 38235703 38235885 -47459869 + MER117 DNA MER1_type 2 196 -1 233 316 174 0 chr15 38235888 38235986 -47459768 - MIR3 SINE MIR -46 162 48 364 382 92 24 chr15 38236585 38236923 -47458831 - L2 LINE L2 -15 3257 2897 312 115 0 19 chr15 38236964 38237016 -47458738 + MLT1A1 LTR MaLR 3 53 -312 1252 139 58 43 chr15 38237061 38237319 -47458435 + Tigger7 DNA MER2_type 2225 2486 -1 1900 174 0 0 chr15 38237324 38237629 -47458125 + MLT1A1 LTR MaLR 58 362 -3 182 344 16 62 chr15 38238030 38238158 -47457596 - L2 LINE L2 -454 2860 2739 588 251 78 36 chr15 38238229 38238448 -47457306 + MIR SINE MIR 35 262 0 187 281 70 0 chr15 38239956 38240013 -47455741 + L2 LINE L2 3206 3266 -6 213 225 0 0 chr15 38240016 38240056 -47455698 + GA-rich Low_complexity Low_complexity 3 42 0 23 33 0 0 chr15 38241737 38241767 -47453987 + AT_rich Low_complexity Low_complexity 1 30 0 209 204 41 0 chr15 38241836 38241885 -47453869 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 514 240 156 16 chr15 38241889 38242139 -47453615 - L1M4 LINE L1 -1778 5070 4786 7089 231 53 56 chr15 38242277 38244575 -47451179 + L1M4 LINE L1 2659 4948 -1198 35077 94 18 12 chr15 38244775 38250867 -47444887 - L1PA4 LINE L1 -26 6129 11 6420 185 65 22 chr15 38250885 38251217 -47444537 - L1M4 LINE L1 -2204 4644 4328 2275 184 31 2 chr15 38251217 38251631 -47444123 + MSTB LTR MaLR 1 426 0 6420 185 65 22 chr15 38251631 38253166 -47442588 - L1M4 LINE L1 -2520 4328 2606 1880 137 7 14 chr15 38253166 38253459 -47442295 - AluSp SINE Alu -22 291 1 6420 185 65 22 chr15 38253459 38253545 -47442209 - L1M4 LINE L1 -4242 2606 2525 8837 225 45 41 chr15 38253693 38256257 -47439497 - L1M4 LINE L1 -4261 2588 15 482 300 96 13 chr15 38256273 38256670 -47439084 + L1M4 LINE L1 2149 2578 -3568 3454 102 34 4 chr15 38257124 38257652 -47438102 + L1PA10 LINE L1 5610 6153 -15 24 0 0 0 chr15 38257656 38257680 -47438074 + AT_rich Low_complexity Low_complexity 1 24 0 182 232 161 0 chr15 38257952 38258008 -47437746 - MIR SINE MIR -116 146 82 3915 222 27 24 chr15 38258334 38259412 -47436342 - L1MC4a LINE L1 0 7808 6728 23 54 0 0 chr15 38259567 38259604 -47436150 + AT_rich Low_complexity Low_complexity 1 37 0 5957 176 71 22 chr15 38259605 38261049 -47434705 - Looper DNA T2_type -6 1552 32 2182 97 20 10 chr15 38261049 38261349 -47434405 + AluSx SINE Alu 1 303 -9 5957 176 71 22 chr15 38261349 38261374 -47434380 - Looper DNA T2_type -1526 32 10 196 356 69 11 chr15 38261590 38261677 -47434077 + MIR3 SINE MIR 6 97 -111 1709 93 0 0 chr15 38263702 38263947 -47431807 - AluSg/x SINE Alu 0 313 69 187 234 26 13 chr15 38267096 38267173 -47428581 + GA-rich Low_complexity Low_complexity 3 80 0 226 333 30 10 chr15 38267717 38267816 -47427938 + MIR3 SINE MIR 108 208 0 13277 65 6 1 chr15 38268198 38270123 -47425631 + L1PA15 LINE L1 3547 5477 -677 3590 142 17 57 chr15 38270257 38270954 -47424800 + L1PA15 LINE L1 5478 6146 -19 545 261 10 36 chr15 38270970 38271165 -47424589 - Charlie4 DNA MER1_type -1734 227 38 357 183 54 11 chr15 38272297 38272390 -47423364 + MER94 DNA DNA 2 98 -36 284 327 47 9 chr15 38272551 38272658 -47423096 + MIR SINE MIR 36 146 -62 47 44 0 0 chr15 38272814 38272882 -47422872 + AT_rich Low_complexity Low_complexity 1 68 0 306 315 7 14 chr15 38273237 38273380 -47422374 - L1ME LINE L1 -500 5621 5480 2934 132 78 15 chr15 38273455 38274706 -47421048 + SVA Other Other 307 868 -588 421 202 62 0 chr15 38275300 38275429 -47420325 + L1ME4a LINE L1 5975 6111 -10 320 299 14 76 chr15 38275684 38275828 -47419926 - MIR SINE MIR -82 180 46 231 233 0 50 chr15 38275946 38276006 -47419748 - MIR SINE MIR -11 251 195 334 210 0 0 chr15 38276224 38276286 -47419468 - MER5A DNA MER1_type -80 109 48 368 306 18 6 chr15 38277981 38278121 -47417633 - MIR SINE MIR -63 145 14 3089 187 7 64 chr15 38278239 38278792 -47416962 + MER82 DNA MER2_type 3 511 -142 4612 101 25 18 chr15 38278792 38279525 -47416229 + L1PB2 LINE L1 5414 6151 0 3089 187 7 64 chr15 38279525 38279661 -47416093 + MER82 DNA MER2_type 511 653 0 371 299 157 70 chr15 38280092 38280423 -47415331 - L2 LINE L2 0 3272 2913 780 212 33 0 chr15 38280567 38280751 -47415003 - L1 LINE L1 -1549 4597 4408 1638 196 51 24 chr15 38280767 38280809 -47414945 + L1PB4 LINE L1 5730 5769 -387 204 40 0 0 chr15 38280809 38280834 -47414920 + (TA)n Simple_repeat Simple_repeat 2 26 0 189 74 0 0 chr15 38280833 38280860 -47414894 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 1638 196 51 24 chr15 38280834 38281226 -47414528 + L1PB4 LINE L1 5769 6149 -7 352 349 71 8 chr15 38282359 38282485 -47413269 - MIR3 SINE MIR -14 194 61 189 200 156 0 chr15 38282758 38282803 -47412951 + L3b LINE CR1 1493 1544 -39 23 33 0 0 chr15 38283147 38283177 -47412577 + AT_rich Low_complexity Low_complexity 1 30 0 353 295 127 36 chr15 38284285 38284451 -47411303 + MIR SINE MIR 16 196 -66 22 70 0 0 chr15 38284501 38284544 -47411210 + AT_rich Low_complexity Low_complexity 1 43 0 610 223 130 0 chr15 38284695 38284855 -47410899 + MER5A DNA MER1_type 4 187 -2 236 235 49 12 chr15 38285039 38285120 -47410634 - MER113 DNA MER1_type? -406 115 32 8936 123 11 8 chr15 38285347 38287592 -47408162 - L1PA10 LINE L1 -11 6157 3912 377 284 168 4 chr15 38288479 38288960 -47406794 + L1MC/D LINE L1 5161 5341 -805 207 69 0 0 chr15 38289227 38289256 -47406498 + (GA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr15 38289271 38289297 -47406457 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr15 38290079 38290122 -47405632 + AT_rich Low_complexity Low_complexity 1 43 0 206 121 0 0 chr15 38290304 38290337 -47405417 + (T)n Simple_repeat Simple_repeat 1 33 0 1137 237 72 9 chr15 38293277 38293598 -47402156 - MER58B DNA MER1_type 0 341 1 1072 169 166 0 chr15 38293752 38294030 -47401724 - MER33 DNA MER1_type 0 324 1 21 36 0 0 chr15 38294094 38294122 -47401632 + AT_rich Low_complexity Low_complexity 1 28 0 2259 106 3 3 chr15 38294659 38294961 -47400793 - AluSq SINE Alu -11 302 1 230 258 71 45 chr15 38295025 38295180 -47400574 - L1MC/D LINE L1 -1961 5916 5758 204 217 0 0 chr15 38295221 38295267 -47400487 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 885 20 0 0 chr15 38295532 38295630 -47400124 - AluYb8 SINE Alu -8 310 213 442 311 80 69 chr15 38295679 38295898 -47399856 - L1MC/D LINE L1 -1095 5120 4894 300 82 262 0 chr15 38295898 38295959 -47399795 - MADE1 DNA Mariner -2 78 2 442 311 80 69 chr15 38295959 38296089 -47399665 - L1MC/D LINE L1 -1321 4894 4767 255 269 19 28 chr15 38296152 38296260 -47399494 - L1MC/D LINE L1 -1528 4687 4581 1843 113 71 4 chr15 38296400 38296666 -47399088 - AluSg SINE Alu -25 285 2 725 179 178 27 chr15 38296822 38297090 -47398664 - L1MB8 LINE L1 -1 6177 5864 * 1476 268 111 52 chr15 38297081 38297654 -47398100 - L1MC/D LINE L1 -4136 2260 1722 2037 89 20 26 chr15 38297654 38297956 -47397798 - AluY SINE Alu -11 300 1 1476 268 111 52 chr15 38297956 38298600 -47397154 - L1MC/D LINE L1 -4674 1722 934 1627 147 68 8 chr15 38298600 38298865 -47396889 + AluSx SINE Alu 1 281 -31 1476 268 111 52 chr15 38298865 38299158 -47396596 - L1MC/D LINE L1 -5462 934 660 335 289 78 14 chr15 38299325 38299467 -47396287 - L1MC/D LINE L1 -6211 185 35 21 36 0 0 chr15 38299630 38299658 -47396096 + AT_rich Low_complexity Low_complexity 1 28 0 995 177 92 8 chr15 38300451 38300711 -47395043 + L1MB7 LINE L1 3657 3938 -2208 2627 160 54 12 chr15 38300711 38301192 -47394562 + L1MB7 LINE L1 5673 6173 -11 485 241 259 0 chr15 38301242 38301412 -47394342 - MIR SINE MIR -2 260 47 319 232 85 0 chr15 38303286 38303368 -47392386 + MIR SINE MIR 100 188 -74 486 209 36 65 chr15 38303369 38303508 -47392246 + MSTD LTR MaLR 5 139 -257 741 254 41 0 chr15 38303552 38303721 -47392033 + MSTD LTR MaLR 219 394 -2 377 310 122 22 chr15 38303847 38304076 -47391678 + MIR SINE MIR 3 254 -8 420 37 0 0 chr15 38304212 38304266 -47391488 + (TG)n Simple_repeat Simple_repeat 2 55 0 2989 91 220 8 chr15 38304381 38304895 -47390859 + L1PA7 LINE L1 3190 3812 -2334 1872 126 8 0 chr15 38306538 38306801 -47388953 - AluSx SINE Alu -47 265 1 10434 105 42 1 chr15 38306994 38309266 -47386488 + L1PA7 LINE L1 3775 6150 -4 3109 204 74 73 chr15 38309549 38309932 -47385822 - L1ME1 LINE L1 -5 6161 5780 1410 165 8 17 chr15 38309932 38310169 -47385585 + MER46A DNA MER2_type 2 236 0 3109 204 74 73 chr15 38310169 38311095 -47384659 - L1ME1 LINE L1 -386 5780 4840 2402 76 26 0 chr15 38311095 38311397 -47384357 - AluY SINE Alu -1 310 1 3109 204 74 73 chr15 38311397 38311499 -47384255 - L1ME1 LINE L1 -1326 4840 4740 22 0 0 0 chr15 38312292 38312314 -47383440 + AT_rich Low_complexity Low_complexity 1 22 0 389 251 109 60 chr15 38313334 38313517 -47382237 + MIR SINE MIR 57 248 -14 1249 200 11 31 chr15 38313527 38313787 -47381967 + AluJo SINE Alu 1 255 -57 1319 181 46 39 chr15 38313835 38314117 -47381637 + AluJo SINE Alu 3 286 -26 355 326 105 48 chr15 38314158 38314471 -47381283 - L2 LINE L2 -121 3151 2821 22 0 0 0 chr15 38314899 38314921 -47380833 + AT_rich Low_complexity Low_complexity 1 22 0 393 217 75 19 chr15 38315549 38315655 -47380099 - MIR SINE MIR -61 147 36 257 224 0 0 chr15 38316329 38316387 -47379367 + L2 LINE L2 3254 3311 -2 413 276 163 15 chr15 38317123 38317326 -47378428 + MIR SINE MIR 24 256 -6 660 270 26 52 chr15 38318189 38318422 -47377332 - MIR SINE MIR -19 243 17 658 295 34 24 chr15 38318668 38319079 -47376675 - LTR16A LTR ERVL 0 450 3 261 350 29 0 chr15 38320431 38320534 -47375220 - L3b LINE CR1 -68 1515 1410 334 272 178 26 chr15 38321048 38321239 -47374515 + MER102b DNA MER1_type 122 341 0 297 262 83 0 chr15 38321258 38321342 -47374412 - MIR SINE MIR -62 146 56 2200 77 30 24 chr15 38321914 38322212 -47373542 + AluY SINE Alu 1 300 -11 337 192 0 27 chr15 38323189 38323262 -47372492 - MER116 DNA Mariner 0 80 10 188 241 96 48 chr15 38324880 38324963 -47370791 - L2 LINE L2 0 3313 3227 862 209 102 25 chr15 38325762 38325997 -47369757 + MIR SINE MIR 4 256 -6 285 268 36 27 chr15 38327396 38327508 -47368246 + MER5A DNA MER1_type 56 168 -21 * 388 248 50 41 chr15 38327416 38327537 -47368217 - MER5A DNA MER1_type -65 124 3 297 300 0 67 chr15 38328180 38328300 -47367454 + MER5A DNA MER1_type 78 189 0 223 269 34 50 chr15 38328302 38328421 -47367333 - MIR3 SINE MIR -77 131 15 190 114 23 23 chr15 38329319 38329363 -47366391 + CT-rich Low_complexity Low_complexity 3 46 0 250 236 39 79 chr15 38333549 38333676 -47362078 - L2 LINE L2 -931 2383 2262 180 152 0 0 chr15 38334702 38334735 -47361019 + CT-rich Low_complexity Low_complexity 2 34 0 247 291 175 0 chr15 38334735 38334838 -47360916 - L2 LINE L2 -1 3271 3151 239 256 11 67 chr15 38335104 38335194 -47360560 + MIR SINE MIR 103 187 -75 570 260 65 8 chr15 38336736 38336924 -47358830 + MIR SINE MIR 57 250 -12 418 137 368 0 chr15 38338479 38338574 -47357180 + L1MB3 LINE L1 5664 5793 -390 224 30 30 0 chr15 38338736 38338769 -47356985 + (CA)n Simple_repeat Simple_repeat 2 35 0 1640 150 56 97 chr15 38338977 38339391 -47356363 + L1MB3 LINE L1 5776 6172 -11 2275 162 67 8 chr15 38339992 38340363 -47355391 - MSTD LTR MaLR 0 396 4 304 229 267 8 chr15 38340367 38340498 -47355256 - MIR3 SINE MIR -33 175 11 268 351 20 3 chr15 38340787 38340906 -47354848 + MIR SINE MIR 28 150 -58 210 319 59 44 chr15 38340924 38341059 -47354695 + MER5A DNA MER1_type 2 138 -51 237 312 73 9 chr15 38342209 38342318 -47353436 + MIR SINE MIR 20 135 -73 278 296 96 8 chr15 38342664 38342789 -47352965 - L2 LINE L2 0 3272 3137 375 246 70 42 chr15 38344060 38344202 -47351552 + MIR SINE MIR 13 158 -104 453 257 66 29 chr15 38344277 38344538 -47351216 + L1P5 LINE L1 5209 5447 -704 5909 151 3 7 chr15 38344695 38345618 -47350136 + L1PA14 LINE L1 1 920 -6661 * 17563 196 12 41 chr15 38345614 38347702 -47348052 + L1PA14 LINE L1 2648 4561 -3023 2195 161 119 8 chr15 38347702 38348087 -47347667 + MSTA LTR MaLR 1 428 0 17563 196 12 41 chr15 38348087 38350041 -47345713 + L1PA14 LINE L1 4561 6571 -1013 314 93 0 0 chr15 38350067 38350110 -47345644 - L1 LINE L1 -1404 4742 4700 4525 109 26 72 chr15 38350116 38350880 -47344874 + L1PA14 LINE L1 6869 7597 -2 676 275 52 10 chr15 38351084 38351277 -47344477 + MIR SINE MIR 14 214 -48 322 198 178 50 chr15 38351380 38351481 -47344273 - MIR SINE MIR -64 144 31 373 287 41 8 chr15 38351745 38351867 -47343887 - MIR SINE MIR -46 216 91 187 234 26 13 chr15 38353874 38353951 -47341803 + GA-rich Low_complexity Low_complexity 3 80 0 197 333 30 10 chr15 38354495 38354594 -47341160 + MIR3 SINE MIR 108 208 0 12906 95 7 3 chr15 38354976 38357566 -47338188 + L1PA7 LINE L1 3547 6151 -3 308 301 59 54 chr15 38358350 38358536 -47337218 - MER5A DNA MER1_type -2 187 1 21 57 0 0 chr15 38358734 38358769 -47336985 + AT_rich Low_complexity Low_complexity 1 35 0 198 351 73 36 chr15 38359605 38359770 -47335984 - L2 LINE L2 -236 3036 2866 383 313 81 0 chr15 38360619 38360779 -47334975 + MIR SINE MIR 87 259 -3 2293 110 0 0 chr15 38361022 38361332 -47334422 + AluY SINE Alu 1 310 -1 620 288 75 0 chr15 38362790 38363002 -47332752 + MIR SINE MIR 10 237 -25 213 163 0 23 chr15 38364144 38364187 -47331567 + A-rich Low_complexity Low_complexity 2 43 0 278 290 150 0 chr15 38364526 38364626 -47331128 - L2 LINE L2 -4 3268 3154 191 296 121 38 chr15 38364747 38365118 -47330636 + L2 LINE L2 2355 2756 -558 330 288 97 59 chr15 38365149 38365609 -47330145 + L2 LINE L2 2733 3280 -33 527 359 65 3 chr15 38366844 38367215 -47328539 - L2 LINE L2 -368 2946 2553 2105 125 0 0 chr15 38367916 38368242 -47327512 - AluSc SINE Alu 0 326 1 249 230 0 46 chr15 38368435 38368522 -47327232 + C-rich Low_complexity Low_complexity 5 87 0 186 328 102 8 chr15 38369605 38369733 -47326021 - MIR3 SINE MIR -48 160 21 327 49 0 0 chr15 38370091 38370132 -47325622 + (GA)n Simple_repeat Simple_repeat 1 41 0 24 77 0 0 chr15 38371208 38371260 -47324494 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr15 38371288 38371319 -47324435 + AT_rich Low_complexity Low_complexity 1 31 0 425 252 84 7 chr15 38372452 38372595 -47323159 + MIR3 SINE MIR 16 169 -39 211 267 40 13 chr15 38372800 38372875 -47322879 + MIR SINE MIR 77 153 -109 1831 124 88 11 chr15 38373365 38373639 -47322115 + AluSq SINE Alu 1 295 -18 520 289 31 6 chr15 38374588 38374747 -47321007 - MLT1I LTR MaLR -2 407 245 226 226 262 0 chr15 38374854 38374938 -47320816 + MIR SINE MIR 10 115 -147 1611 213 97 18 chr15 38374943 38375399 -47320355 - L1ME1 LINE L1 0 6166 5675 222 292 146 0 chr15 38375822 38375918 -47319836 + MIR SINE MIR 83 192 -70 223 309 45 27 chr15 38377721 38377831 -47317923 + MIR SINE MIR 35 146 -62 * 752 241 66 19 chr15 38377825 38378037 -47317717 - MIR SINE MIR -17 245 24 1854 152 0 4 chr15 38378066 38378342 -47317412 - AluJb SINE Alu -37 275 1 21 0 0 0 chr15 38378819 38378840 -47316914 + AT_rich Low_complexity Low_complexity 1 21 0 1144 237 10 30 chr15 38379607 38380035 -47315719 + AluJb SINE Alu 2 423 0 289 257 104 71 chr15 38381091 38381274 -47314480 + MIR3 SINE MIR 14 202 -6 1758 180 7 10 chr15 38382833 38383127 -47312627 - AluJo SINE Alu -17 295 3 16104 80 14 13 chr15 38383285 38386260 -47309494 + L1PA7 LINE L1 3167 6153 -1 269 215 86 11 chr15 38386265 38386358 -47309396 - L1ME4a LINE L1 -3 6118 6019 25 31 0 0 chr15 38386359 38386391 -47309363 + AT_rich Low_complexity Low_complexity 1 32 0 232 256 44 22 chr15 38386402 38386492 -47309262 + MER94 DNA DNA 43 134 0 227 290 30 20 chr15 38386492 38386592 -47309162 - L2 LINE L2 -20 3293 3193 281 282 78 42 chr15 38386838 38386980 -47308774 + MIR3 SINE MIR 61 207 -1 226 212 257 35 chr15 38387990 38388103 -47307651 - Charlie8 DNA MER1_type -2227 190 53 2137 160 42 34 chr15 38388269 38388816 -47306938 + MLT2A2 LTR ERVL 1 554 0 256 219 31 0 chr15 38389214 38389278 -47306476 + G-rich Low_complexity Low_complexity 3 68 0 993 161 39 0 chr15 38389647 38389827 -47305927 - MER53 DNA DNA -1 188 2 241 304 33 11 chr15 38390053 38390145 -47305609 + MIR SINE MIR 71 164 -98 230 233 68 83 chr15 38391137 38391270 -47304484 + MIR SINE MIR 81 211 -51 280 286 89 0 chr15 38391988 38392100 -47303654 + L2 LINE L2 3192 3313 0 217 317 37 0 chr15 38392362 38392444 -47303310 + L3b LINE CR1 1259 1343 -240 556 252 107 0 chr15 38392618 38392777 -47302977 - MER117 DNA MER1_type 0 197 22 476 289 62 40 chr15 38392782 38393007 -47302747 - L2 LINE L2 -7 3306 3077 2213 233 61 8 chr15 38393039 38393546 -47302208 - MLT1F LTR MaLR -8 534 1 639 306 51 0 chr15 38393551 38393781 -47301973 - L2 LINE L2 -303 3010 2770 1780 236 67 50 chr15 38393787 38394376 -47301378 - MLT1G LTR MaLR 0 590 2 1632 288 202 16 chr15 38394379 38395267 -47300487 - L2 LINE L2 -551 2763 1711 393 309 14 69 chr15 38395354 38395571 -47300183 + MIR SINE MIR 53 257 -5 2392 93 0 6 chr15 38396264 38396575 -47299179 - AluSc SINE Alu 0 309 1 2296 98 0 10 chr15 38396623 38396920 -47298834 - AluSg SINE Alu -14 296 3 329 347 25 0 chr15 38396954 38397075 -47298679 + MER94 DNA DNA 1 124 -10 340 337 67 17 chr15 38398196 38398374 -47297380 + MER5A DNA MER1_type 2 188 -1 720 201 119 0 chr15 38398389 38398548 -47297206 + MER5B DNA MER1_type 1 178 0 197 327 0 0 chr15 38398671 38398726 -47297028 + MER5C DNA MER1_type 1 55 -269 198 0 0 0 chr15 38398780 38398802 -47296952 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1018 305 47 19 chr15 38399379 38399740 -47296014 - MLT1K LTR MaLR -214 374 4 287 314 35 0 chr15 38400909 38400995 -47294759 - MER94 DNA DNA -41 93 5 1454 245 122 20 chr15 38402257 38402857 -47292897 + L1ME3A LINE L1 5504 6164 -6 250 292 0 0 chr15 38404010 38404075 -47291679 - MER45 DNA AcHobo 0 1581 1517 453 293 176 14 chr15 38404186 38404408 -47291346 + L1M4 LINE L1 4053 4310 -1836 367 345 30 18 chr15 38404910 38405075 -47290679 + MIR SINE MIR 17 183 -79 314 305 95 20 chr15 38405760 38406065 -47289689 - L1M4 LINE L1 -2222 3924 3597 9432 196 43 22 chr15 38406168 38409256 -47286498 - L1 LINE L1 -1643 4685 1482 2151 141 0 3 chr15 38409256 38409569 -47286185 - AluSq SINE Alu -1 312 1 9432 196 43 22 chr15 38409569 38411073 -47284681 - L1 LINE L1 -4846 1482 11 353 267 48 34 chr15 38411118 38411324 -47284430 - L1M4 LINE L1 -2589 3557 3349 2263 162 42 25 chr15 38411326 38411807 -47283947 - L1MB7 LINE L1 -1 6183 5695 300 27 0 0 chr15 38411862 38411899 -47283855 + (CA)n Simple_repeat Simple_repeat 1 37 0 203 340 0 0 chr15 38412122 38412172 -47283582 - MIR SINE MIR -131 131 82 219 340 15 10 chr15 38412174 38412261 -47283493 - MIR SINE MIR -105 103 16 463 242 36 97 chr15 38413238 38413569 -47282185 + L1ME4a LINE L1 5756 6066 -55 317 303 103 18 chr15 38413625 38413790 -47281964 - MIR3 SINE MIR -6 202 24 5654 253 60 21 chr15 38413833 38415913 -47279841 - L1MDa LINE L1 -1794 4746 2587 610 179 179 31 chr15 38415937 38416133 -47279621 - L1MDa LINE L1 -4358 2182 1958 3136 118 61 2 chr15 38416706 38417213 -47278541 + LTR12 LTR ERV1 1 537 -177 351 308 77 0 chr15 38417213 38417330 -47278424 + MIR SINE MIR 18 143 -65 517 264 68 0 chr15 38418176 38418339 -47277415 + MER5C DNA MER1_type 7 180 -144 559 230 30 18 chr15 38418357 38418522 -47277232 + L1ME2 LINE L1 5998 6164 0 817 158 8 8 chr15 38418546 38418679 -47277075 + AluSq/x SINE Alu 1 133 -180 216 86 0 0 chr15 38418777 38418812 -47276942 + (A)n Simple_repeat Simple_repeat 1 35 0 229 239 56 14 chr15 38418849 38418920 -47276834 + L1MC4 LINE L1 7922 7995 -47 425 230 178 0 chr15 38418975 38419110 -47276644 + MER5C DNA MER1_type 163 321 -3 218 289 30 111 chr15 38419358 38419562 -47276192 + MER5B DNA MER1_type 2 189 0 716 239 33 5 chr15 38419622 38419806 -47275948 - MER5A DNA MER1_type 0 189 1 811 229 5 29 chr15 38419875 38420080 -47275674 - MER3 DNA MER1_type 0 209 10 207 349 39 8 chr15 38420203 38420332 -47275422 - L2 LINE L2 -1 3312 3180 230 319 60 0 chr15 38421810 38421926 -47273828 - MER117 DNA MER1_type -2 195 73 375 305 35 35 chr15 38423908 38424049 -47271705 + MIR SINE MIR 52 192 -70 3870 196 87 16 chr15 38424492 38425461 -47270293 + L1MC4a LINE L1 6597 7634 -174 21 36 0 0 chr15 38425731 38425759 -47269995 + AT_rich Low_complexity Low_complexity 1 28 0 185 136 0 23 chr15 38425848 38425892 -47269862 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr15 38426692 38426714 -47269040 + AT_rich Low_complexity Low_complexity 1 22 0 192 240 60 0 chr15 38426725 38426775 -47268979 - L2 LINE L2 -6 3266 3214 384 213 93 9 chr15 38428791 38428899 -47266855 + MIR SINE MIR 30 146 -116 430 300 14 0 chr15 38429364 38429504 -47266250 + MIR SINE MIR 4 145 -117 415 173 13 0 chr15 38429571 38429646 -47266108 - MADE1 DNA Mariner -4 76 1 1348 247 38 0 chr15 38429710 38430054 -47265700 - MLT1A1 LTR MaLR -8 357 1 225 0 0 0 chr15 38430880 38430905 -47264849 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 38431634 38431655 -47264099 + AT_rich Low_complexity Low_complexity 1 21 0 1753 186 40 8 chr15 38432249 38432603 -47263151 - MLT1A1 LTR MaLR 0 365 1 917 221 18 36 chr15 38433126 38433348 -47262406 - MER20 DNA MER1_type -1 218 1 245 191 0 0 chr15 38433499 38433546 -47262208 + LTR45B LTR ERV1 82 128 -361 818 212 113 64 chr15 38433584 38433929 -47261825 + LTR45B LTR ERV1 128 489 0 521 233 17 0 chr15 38435521 38435641 -47260113 + MER45B DNA AcHobo 2 123 -917 * 2951 167 57 53 chr15 38435638 38436356 -47259398 + MER45B DNA AcHobo 225 945 -95 1538 224 24 22 chr15 38437200 38437571 -47258183 + MLT1A2 LTR MaLR 3 374 0 2334 71 0 0 chr15 38438238 38438521 -47257233 - AluY SINE Alu -10 301 19 274 237 68 0 chr15 38438715 38438774 -47256980 - L2 LINE L2 -41 3231 3169 1842 192 11 8 chr15 38438856 38439221 -47256533 + MER47A DNA MER2_type 1 366 0 204 67 0 0 chr15 38439339 38439369 -47256385 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 10980 156 66 16 chr15 38439524 38441641 -47254113 + Tigger7 DNA MER2_type 265 2487 0 377 313 101 1 chr15 38441693 38441857 -47253897 + MIR SINE MIR 23 202 -60 1080 233 41 72 chr15 38442465 38442739 -47253015 - Charlie4a DNA MER1_type -1453 508 254 5375 116 16 48 chr15 38442739 38443978 -47251776 + L1PA15 LINE L1 4936 6146 -19 1080 233 41 72 chr15 38443978 38444189 -47251565 - Charlie4a DNA MER1_type -1707 254 38 394 204 43 0 chr15 38445321 38445414 -47250340 + MER94 DNA DNA 2 98 -36 284 327 47 9 chr15 38445576 38445683 -47250071 + MIR SINE MIR 36 146 -62 47 44 0 0 chr15 38445839 38445907 -47249847 + AT_rich Low_complexity Low_complexity 1 68 0 306 315 7 14 chr15 38446262 38446405 -47249349 - L1ME LINE L1 -500 5621 5480 1933 156 0 3 chr15 38446461 38446762 -47248992 - AluSx SINE Alu -12 300 1 29 28 0 0 chr15 38446977 38447013 -47248741 + AT_rich Low_complexity Low_complexity 1 36 0 1994 147 0 13 chr15 38447018 38447332 -47248422 + AluSq SINE Alu 4 313 0 248 295 146 16 chr15 38447521 38447843 -47247911 - L1ME LINE L1 -392 5729 5366 507 296 181 31 chr15 38447861 38448348 -47247406 - L1ME LINE L1 -824 5322 4763 442 314 38 93 chr15 38448524 38448594 -47247160 - L1ME LINE L1 -1618 4528 4456 571 27 0 0 chr15 38448594 38448669 -47247085 - L1PA2 LINE L1 0 6155 6081 442 314 38 93 chr15 38448669 38448879 -47246875 - L1ME LINE L1 -1690 4456 4276 534 273 17 11 chr15 38448879 38449055 -47246699 + MER5B DNA MER1_type 1 177 -1 442 314 38 93 chr15 38449055 38449193 -47246561 - L1ME LINE L1 -1870 4276 4132 8957 199 36 29 chr15 38449195 38449801 -47245953 - L1PA16 LINE L1 -8 6158 5558 1678 146 39 93 chr15 38449801 38450157 -47245597 + MER1B DNA MER1_type 1 337 0 8957 199 36 29 chr15 38450157 38453309 -47242445 - L1PA16 LINE L1 -608 5558 2359 1391 119 16 103 chr15 38453993 38454245 -47241509 + MER30 DNA MER1_type 1 230 0 344 248 125 107 chr15 38455074 38455480 -47240274 - L1ME LINE L1 -2291 3855 3441 321 246 108 46 chr15 38456253 38456383 -47239371 + MIR3 SINE MIR 62 199 -9 638 309 172 15 chr15 38456648 38457033 -47238721 + L3 LINE CR1 395 865 -712 183 42 0 0 chr15 38457033 38457057 -47238697 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 638 309 172 15 chr15 38457057 38457131 -47238623 + L3 LINE CR1 865 926 -651 377 317 75 84 chr15 38457170 38457255 -47238499 + L3 LINE CR1 1053 1137 -440 1111 175 23 0 chr15 38457255 38457426 -47238328 + FAM SINE Alu 1 175 0 377 317 75 84 chr15 38457426 38457662 -47238092 + L3 LINE CR1 1137 1371 -206 * 411 295 194 6 chr15 38457653 38457830 -47237924 + MIR SINE MIR 18 228 -34 213 352 9 48 chr15 38458076 38458181 -47237573 + MIR SINE MIR 41 141 -67 241 238 16 0 chr15 38459944 38460007 -47235747 + (TATG)n Simple_repeat Simple_repeat 1 64 0 181 250 0 0 chr15 38460592 38460628 -47235126 - L2 LINE L2 -33 3239 3204 193 312 39 0 chr15 38460958 38461035 -47234719 - MIR SINE MIR -100 108 29 1298 119 5 30 chr15 38462619 38462820 -47232934 + MER2 DNA MER2_type 1 196 -149 826 252 136 42 chr15 38462874 38463418 -47232336 + L1ME4a LINE L1 5510 6104 -17 399 228 280 21 chr15 38463711 38463900 -47231854 + MIR SINE MIR 25 262 0 2847 99 6 0 chr15 38464018 38464380 -47231374 + THE1B LTR MaLR 1 364 0 551 218 9 9 chr15 38465106 38465216 -47230538 + MER81 DNA DNA 4 113 -1 485 315 121 24 chr15 38465267 38465597 -47230157 + MLT1J2 LTR MaLR 67 428 -22 186 320 157 7 chr15 38465877 38466030 -47229724 - L2 LINE L2 -529 2785 2610 1515 170 3 79 chr15 38466045 38466164 -47229590 + AluJo SINE Alu 1 127 -185 1869 114 37 47 chr15 38466164 38466461 -47229293 - AluSx SINE Alu -16 296 3 1515 170 3 79 chr15 38466461 38466659 -47229095 + AluJo SINE Alu 127 294 -18 1683 147 55 0 chr15 38467206 38467479 -47228275 + AluJb SINE Alu 1 288 -24 384 263 67 127 chr15 38467553 38468065 -47227689 - L2 LINE L2 -5 3267 2789 2172 206 50 6 chr15 38468922 38469423 -47226331 + L1MC3 LINE L1 7257 7779 -6 31820 103 22 61 chr15 38470183 38476580 -47219174 + L1PA7 LINE L1 12 6154 0 276 301 115 39 chr15 38476750 38477036 -47218718 - L1ME3A LINE L1 -230 5940 5633 386 258 242 0 chr15 38477953 38478081 -47217673 - MIR SINE MIR -12 250 92 383 255 10 0 chr15 38478824 38478926 -47216828 - MIR SINE MIR -55 207 105 754 228 83 95 chr15 38479518 38479940 -47215814 + MLT1J1 LTR MaLR 1 417 -29 245 353 46 13 chr15 38481094 38481247 -47214507 - MIR SINE MIR -29 233 76 343 75 151 0 chr15 38482070 38482123 -47213631 - U7 snRNA snRNA -1 62 2 2019 211 68 78 chr15 38482123 38482838 -47212916 + L1ME1 LINE L1 5459 6166 0 1335 186 24 4 chr15 38483755 38484003 -47211751 - L1PA16 LINE L1 -2 6164 5912 182 241 218 11 chr15 38485065 38485152 -47210602 - MIR SINE MIR -48 214 110 601 271 61 28 chr15 38486135 38486349 -47209405 - MIR SINE MIR -34 228 8 866 184 48 88 chr15 38486771 38487021 -47208733 - L2 LINE L2 -2 3311 3072 858 283 122 29 chr15 38487085 38487724 -47208030 + L1ME LINE L1 5101 5804 -358 32 0 0 0 chr15 38487807 38487839 -47207915 + AT_rich Low_complexity Low_complexity 1 32 0 225 264 55 27 chr15 38488049 38488159 -47207595 + L1MC4 LINE L1 7929 8041 -1 256 293 60 72 chr15 38488172 38488339 -47207415 + MIR SINE MIR 20 184 -78 370 283 58 22 chr15 38491189 38491327 -47204427 - MIR SINE MIR 0 262 120 1699 175 16 3 chr15 38492065 38492188 -47203566 + AluJo SINE Alu 1 121 -191 183 80 0 0 chr15 38492188 38492213 -47203541 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1699 175 16 3 chr15 38492213 38492392 -47203362 + AluJo SINE Alu 121 307 -5 612 181 163 56 chr15 38492670 38492830 -47202924 + MER5B DNA MER1_type 1 177 -1 192 40 0 0 chr15 38493075 38493100 -47202654 + (A)n Simple_repeat Simple_repeat 1 25 0 217 294 156 0 chr15 38493509 38493618 -47202136 + L2 LINE L2 3147 3272 0 328 290 163 32 chr15 38494834 38495086 -47200668 - L3 LINE CR1 -189 1388 1104 257 182 0 30 chr15 38495481 38495547 -47200207 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 400 238 95 32 chr15 38497164 38497240 -47198514 + L1ME3A LINE L1 6020 6109 -61 2155 194 142 5 chr15 38497240 38497683 -47198071 + MLT1D LTR MaLR 1 504 -1 400 238 95 32 chr15 38497683 38497732 -47198022 + L1ME3A LINE L1 6109 6153 -17 381 243 29 10 chr15 38498165 38498268 -47197486 - MER97b DNA MER1_type? -930 123 19 195 139 0 0 chr15 38498341 38498377 -47197377 + (A)n Simple_repeat Simple_repeat 1 36 0 439 198 167 24 chr15 38498429 38498555 -47197199 - L1ME3 LINE L1 -1 6161 6018 589 297 63 13 chr15 38499166 38499405 -47196349 - MIR SINE MIR 0 262 12 303 270 11 17 chr15 38500147 38500250 -47195504 + CT-rich Low_complexity Low_complexity 3 177 0 214 247 86 37 chr15 38501325 38501406 -47194348 - L2 LINE L2 -50 3263 3179 236 150 0 0 chr15 38503248 38503288 -47192466 + L2 LINE L2 3272 3311 -2 247 310 0 0 chr15 38503603 38503674 -47192080 - MER94 DNA DNA -63 71 1 256 125 0 54 chr15 38504233 38504289 -47191465 + Alu SINE Alu 1 53 -246 330 227 128 79 chr15 38504823 38505026 -47190728 + L1ME4a LINE L1 5879 6091 -30 2516 74 0 3 chr15 38505080 38505391 -47190363 - AluSg SINE Alu 0 310 1 1375 201 68 7 chr15 38505641 38505935 -47189819 + AluJo SINE Alu 1 312 0 253 281 0 0 chr15 38506267 38506331 -47189423 - MIR3 SINE MIR 0 208 145 385 246 152 22 chr15 38506399 38506537 -47189217 + MIR3 SINE MIR 41 196 -12 267 103 0 0 chr15 38506745 38506784 -47188970 + (TTCTCC)n Simple_repeat Simple_repeat 5 43 0 912 169 6 30 chr15 38506895 38507061 -47188693 - MER4B LTR ERV1 -448 162 1 1283 267 151 33 chr15 38508574 38509004 -47186750 + MLT1G1 LTR MaLR 25 505 -90 206 391 0 0 chr15 38509042 38509111 -47186643 + L2 LINE L2 1531 1599 -1715 563 330 217 8 chr15 38509111 38509566 -47186188 - L2 LINE L2 0 3313 2747 433 216 105 13 chr15 38509568 38509712 -47186042 + MLT1F1 LTR MaLR 2 167 -400 2758 207 84 54 chr15 38509712 38509822 -47185932 + L1ME1 LINE L1 5330 5435 -743 834 194 0 0 chr15 38509822 38509951 -47185803 + FLAM_A SINE Alu 1 129 -4 2758 207 84 54 chr15 38509951 38510693 -47185061 + L1ME1 LINE L1 5435 6176 -2 319 281 117 23 chr15 38510765 38510936 -47184818 + L2 LINE L2 1860 2046 -1268 251 288 25 0 chr15 38511000 38511080 -47184674 + L2 LINE L2 2308 2389 -925 1682 164 7 30 chr15 38511097 38511401 -47184353 - AluJb SINE Alu -15 297 1 25 31 0 0 chr15 38511895 38511927 -47183827 + AT_rich Low_complexity Low_complexity 1 32 0 463 279 112 29 chr15 38511934 38512282 -47183472 + L1MC/D LINE L1 4792 5168 -978 323 211 138 53 chr15 38512354 38512506 -47183248 + L1MC/D LINE L1 5267 5431 -690 225 312 42 53 chr15 38512565 38512754 -47183000 + L1MC/D LINE L1 5550 5736 -434 247 204 0 0 chr15 38512804 38512853 -47182901 + L1MC/D LINE L1 5851 5899 -1909 2557 199 93 43 chr15 38512915 38513543 -47182211 - L1ME1 LINE L1 -5 6161 5497 2193 117 0 13 chr15 38513543 38513859 -47181895 - AluSx SINE Alu 0 312 1 2557 199 93 43 chr15 38513859 38513897 -47181857 - L1ME1 LINE L1 -669 5497 5462 1614 178 42 3 chr15 38514164 38514331 -47181423 - AluJo SINE Alu -14 298 114 306 0 0 0 chr15 38514331 38514365 -47181389 + (TG)n Simple_repeat Simple_repeat 1 34 0 1614 178 42 3 chr15 38514365 38514484 -47181270 - AluJo SINE Alu -198 114 1 420 231 51 26 chr15 38517052 38517169 -47178585 + MIR3 SINE MIR 87 206 -2 24 0 0 0 chr15 38518152 38518176 -47177578 + AT_rich Low_complexity Low_complexity 1 24 0 571 207 36 9 chr15 38519164 38519275 -47176479 + MER90 LTR ERV1 1 114 -500 1534 251 30 5 chr15 38519278 38519645 -47176109 + L1MC4a LINE L1 4571 4946 -1200 301 160 0 0 chr15 38519672 38519722 -47176032 - MLT1F1 LTR MaLR 0 567 518 264 291 12 0 chr15 38520157 38520243 -47175511 - MIR SINE MIR -79 129 43 266 349 47 9 chr15 38520269 38520375 -47175379 + MIR SINE MIR 81 190 -72 561 284 69 16 chr15 38521335 38521652 -47174102 + L1MC4a LINE L1 5494 5800 -321 1948 155 5 55 chr15 38522541 38522684 -47173070 + MLT1A1 LTR MaLR 17 165 -200 2244 106 3 0 chr15 38522684 38522977 -47172777 + AluSp SINE Alu 1 294 -19 1948 155 5 55 chr15 38522977 38523200 -47172554 + MLT1A1 LTR MaLR 165 365 0 570 232 99 51 chr15 38523370 38523767 -47171987 + LTR33 LTR ERVL 1 464 -57 343 307 92 71 chr15 38523883 38524366 -47171388 - L2 LINE L2 -252 3020 2513 1119 253 135 25 chr15 38524366 38524730 -47171024 + MLT1J2 LTR MaLR 14 417 -33 2106 122 0 3 chr15 38524982 38525276 -47170478 - AluSx SINE Alu -19 293 1 288 0 0 0 chr15 38526260 38526292 -47169462 + (TG)n Simple_repeat Simple_repeat 1 32 0 326 332 89 25 chr15 38526644 38526846 -47168908 - MIR SINE MIR -35 227 13 591 186 39 39 chr15 38527254 38527383 -47168371 - L2 LINE L2 -5 3308 3180 279 0 0 0 chr15 38527400 38527431 -47168323 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 233 0 0 chr15 38527542 38527585 -47168169 - L2 LINE L2 0 3313 3271 2332 93 3 0 chr15 38527586 38527876 -47167878 - AluSp SINE Alu -21 292 2 2001 128 7 23 chr15 38528385 38528691 -47167063 - AluSx SINE Alu -11 301 1 863 163 0 15 chr15 38528714 38528849 -47166905 - FLAM_C SINE Alu 0 133 1 517 253 11 56 chr15 38528849 38529039 -47166715 - MIR SINE MIR -47 215 38 329 279 162 9 chr15 38529309 38529420 -47166334 + MIR3 SINE MIR 32 159 -49 242 173 0 58 chr15 38529706 38529758 -47165996 + L2 LINE L2 3264 3312 -1 603 74 0 0 chr15 38530292 38530373 -47165381 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr15 38530539 38530560 -47165194 + AT_rich Low_complexity Low_complexity 1 21 0 321 322 87 0 chr15 38530582 38530731 -47165023 - MIR3 SINE MIR -14 194 33 313 308 176 6 chr15 38531270 38531429 -47164325 + L2 LINE L2 3086 3271 -1 423 249 52 27 chr15 38531989 38532243 -47163511 - L1ME4a LINE L1 -153 5968 5708 199 333 157 0 chr15 38532720 38532828 -47162926 + L2 LINE L2 3189 3313 0 528 93 0 0 chr15 38533252 38533327 -47162427 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 295 39 128 chr15 38533688 38533946 -47161808 - L2 LINE L2 -4 3268 3034 3610 251 94 32 chr15 38534252 38537335 -47158419 + L1MC5 LINE L1 25 3280 -2800 665 253 65 8 chr15 38537337 38537582 -47158172 + L1MC5 LINE L1 4855 5113 -967 802 141 16 8 chr15 38537585 38537713 -47158041 + AluSq/x SINE Alu 3 131 -182 319 274 38 28 chr15 38537814 38537920 -47157834 - MIR SINE MIR -59 149 43 498 308 48 35 chr15 38537940 38538167 -47157587 - MIR SINE MIR -3 259 30 700 315 30 0 chr15 38538178 38538381 -47157373 + MER63A DNA MER1_type 2 210 0 843 252 23 41 chr15 38539051 38539269 -47156485 - MIR SINE MIR -22 240 27 208 147 0 0 chr15 38539949 38539983 -47155771 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 247 82 16 chr15 38540303 38540680 -47155074 + LTR16C LTR ERVL 87 488 -3 427 270 150 49 chr15 38541225 38541451 -47154303 + MIR SINE MIR 8 256 -6 330 263 289 5 chr15 38541404 38541594 -47154160 - MIR SINE MIR -15 247 4 * 188 286 57 0 chr15 38541594 38541652 -47154102 + L2 LINE L2 3196 3257 -15 459 251 86 38 chr15 38541982 38542218 -47153536 + MIR SINE MIR 12 261 -1 201 74 0 0 chr15 38542672 38542699 -47153055 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1959 156 0 0 chr15 38543416 38543711 -47152043 + AluJo SINE Alu 1 295 -17 1168 255 156 82 chr15 38543727 38545917 -47149837 + L1MC5 LINE L1 5478 7845 -50 233 325 16 15 chr15 38546464 38546638 -47149116 + GA-rich Low_complexity Low_complexity 1 174 0 825 176 0 8 chr15 38547206 38547337 -47148417 + FLAM_C SINE Alu 2 131 -2 192 133 0 0 chr15 38548207 38548237 -47147517 - MIR SINE MIR -142 120 91 865 256 34 13 chr15 38548736 38548970 -47146784 + L1ME LINE L1 5492 5730 -391 215 375 102 0 chr15 38550247 38550335 -47145419 + L2 LINE L2 3115 3211 -61 214 257 0 43 chr15 38551099 38551169 -47144585 - MER5B DNA MER1_type -6 172 106 940 103 0 109 chr15 38552443 38552617 -47143137 + MER93b LTR ERV1 3 157 -216 2009 109 3 46 chr15 38552774 38553076 -47142678 + AluSq SINE Alu 3 291 -22 2247 96 0 45 chr15 38553237 38553551 -47142203 + AluSq SINE Alu 1 300 -13 417 206 0 0 chr15 38553551 38553643 -47142111 + (TA)n Simple_repeat Simple_repeat 1 92 0 1027 240 42 9 chr15 38553695 38553912 -47141842 - MER58A DNA MER1_type 0 224 1 249 274 153 40 chr15 38553914 38554487 -47141267 - L1P LINE L1 -1912 4234 3588 454 293 16 0 chr15 38555293 38555416 -47140338 - MER94 DNA DNA -4 130 6 5617 171 20 15 chr15 38555656 38556782 -47138972 - L1 LINE L1 -1700 4446 3315 * 5761 161 29 33 chr15 38556780 38558702 -47137052 + L1MA9 LINE L1 4397 6312 0 458 263 23 23 chr15 38558810 38558981 -47136773 + L1ME4a LINE L1 5673 5843 -278 194 160 0 100 chr15 38560071 38560121 -47135633 + L2 LINE L2 3182 3226 -87 435 194 129 0 chr15 38561820 38561913 -47133841 + MLT1L LTR MaLR 148 252 -363 737 284 31 14 chr15 38561984 38562206 -47133548 + MLT1L LTR MaLR 386 611 -4 389 188 47 0 chr15 38563035 38563120 -47132634 - MIR SINE MIR -49 213 125 457 281 15 65 chr15 38563762 38563961 -47131793 + MLT1L LTR MaLR 423 611 -4 389 188 47 0 chr15 38564790 38564875 -47130879 - MIR SINE MIR -49 213 125 195 290 32 16 chr15 38565250 38565312 -47130442 + MIR SINE MIR 84 146 -116 337 297 50 0 chr15 38565546 38565647 -47130107 + L2 LINE L2 3136 3241 -31 190 207 65 0 chr15 38566213 38566277 -47129477 - MIR SINE MIR -82 180 112 288 286 46 32 chr15 38566824 38567011 -47128743 - MIR SINE MIR -63 145 1 398 309 40 11 chr15 38567118 38567293 -47128461 - MIR3 SINE MIR -17 191 12 812 173 0 7 chr15 38568283 38568422 -47127332 + L1PB3 LINE L1 6011 6148 -6 1155 256 75 37 chr15 38568448 38568796 -47126958 + MER115 DNA AcHobo 1 361 -332 613 201 0 83 chr15 38568899 38568955 -47126799 + Zaphod DNA AcHobo 3877 3936 -95 2072 115 7 0 chr15 38568955 38569241 -47126513 - AluSx SINE Alu -10 302 15 613 201 0 83 chr15 38569241 38569353 -47126401 + Zaphod DNA AcHobo 3936 4031 0 252 330 62 0 chr15 38569400 38569497 -47126257 - L2 LINE L2 0 3272 3170 210 401 11 16 chr15 38569840 38570027 -47125727 - L2 LINE L2 -166 3106 2921 366 258 11 0 chr15 38570762 38570855 -47124899 + L2 LINE L2 3168 3261 -11 259 286 33 0 chr15 38571481 38571572 -47124182 + GA-rich Low_complexity Low_complexity 2 95 0 232 343 80 11 chr15 38571977 38572152 -47123602 + L2 LINE L2 2856 3042 -271 223 295 11 53 chr15 38572718 38572813 -47122941 + MIR SINE MIR 64 154 -108 4931 158 60 10 chr15 38573043 38574228 -47121526 - L1MB3 LINE L1 -3 6180 4935 232 362 17 9 chr15 38574245 38574361 -47121393 - MIR3 SINE MIR -77 131 15 779 205 130 10 chr15 38574865 38574910 -47120844 + MER58A DNA MER1_type 1 39 -2381 2148 114 0 3 chr15 38574910 38575199 -47120555 - AluSx SINE Alu -24 288 1 779 205 130 10 chr15 38575199 38575353 -47120401 + MER58A DNA MER1_type 39 224 0 180 280 169 34 chr15 38575882 38576000 -47119754 + MIR SINE MIR 59 192 -70 225 0 0 0 chr15 38577899 38577924 -47117830 + (TG)n Simple_repeat Simple_repeat 2 26 0 206 229 102 102 chr15 38579228 38579385 -47116369 + MIR SINE MIR 106 262 0 24 32 0 0 chr15 38579654 38579685 -47116069 + AT_rich Low_complexity Low_complexity 1 31 0 2154 116 7 0 chr15 38580485 38580796 -47114958 - AluSq SINE Alu 0 313 1 22 0 0 0 chr15 38580803 38580825 -47114929 + AT_rich Low_complexity Low_complexity 1 22 0 277 320 19 10 chr15 38580903 38581006 -47114748 - MER91A DNA MER1_type -81 115 12 279 0 0 0 chr15 38581094 38581125 -47114629 + (A)n Simple_repeat Simple_repeat 1 31 0 867 133 52 23 chr15 38581252 38581425 -47114329 - MLT1B LTR MaLR -45 345 168 808 154 41 18 chr15 38581442 38581611 -47114143 - L1MA6 LINE L1 0 6300 6128 265 285 76 14 chr15 38581626 38581770 -47113984 - L1M3b LINE L1 -6125 156 4 273 57 0 0 chr15 38582932 38582967 -47112787 + (A)n Simple_repeat Simple_repeat 1 35 0 223 379 31 35 chr15 38585366 38585622 -47110132 - L2 LINE L2 -210 3062 2808 1078 88 14 0 chr15 38585624 38585771 -47109983 + L1PA10 LINE L1 6014 6162 -6 189 420 22 13 chr15 38585843 38586157 -47109597 - L2 LINE L2 -641 2673 2357 * 232 355 103 26 chr15 38586146 38586301 -47109453 + MIR3 SINE MIR 30 196 -12 294 310 44 13 chr15 38586610 38586794 -47108960 + L1ME3A LINE L1 4885 5081 -1065 747 163 65 33 chr15 38586795 38586979 -47108775 - L1MD3 LINE L1 -7 7988 7799 1417 173 0 54 chr15 38587093 38587370 -47108384 + AluJo SINE Alu 50 311 -1 538 251 53 89 chr15 38587379 38588170 -47107584 + L1ME3A LINE L1 5223 5966 -204 704 217 6 12 chr15 38588753 38588914 -47106840 - MER5B DNA MER1_type 0 178 19 21 0 0 0 chr15 38588914 38588935 -47106819 + AT_rich Low_complexity Low_complexity 1 21 0 880 214 29 6 chr15 38589173 38589346 -47106408 - MER20 DNA MER1_type -1 218 42 333 205 172 73 chr15 38590749 38590900 -47104854 - L1MC4 LINE L1 -326 7716 7551 232 294 0 0 chr15 38591145 38591238 -47104516 - MIR SINE MIR -64 144 51 1374 203 14 3 chr15 38592269 38592555 -47103199 + L1MB7 LINE L1 5877 6165 -19 2125 121 3 34 chr15 38592848 38593171 -47102583 + LTR32 LTR ERVL 15 327 -144 927 174 33 16 chr15 38593169 38593353 -47102401 + LTR32 LTR ERVL 285 471 0 * 284 216 80 45 chr15 38595715 38595803 -47099951 + L2 LINE L2 3200 3290 -23 1328 161 77 7 chr15 38596248 38596522 -47099232 + MER33 DNA MER1_type 1 293 -31 2582 131 68 2 chr15 38596522 38596964 -47098790 + L1MB3 LINE L1 5712 6182 -1 24 0 0 0 chr15 38598054 38598078 -47097676 + AT_rich Low_complexity Low_complexity 1 24 0 2012 154 3 3 chr15 38598078 38598390 -47097364 - AluSx SINE Alu 0 312 1 968 253 30 4 chr15 38599702 38599967 -47095787 - L1MD3 LINE L1 -10 7985 7714 575 225 0 17 chr15 38600462 38600582 -47095172 + MLT1D LTR MaLR 8 125 -380 1661 192 86 9 chr15 38600594 38600933 -47094821 + MLT1B LTR MaLR 26 390 0 1603 207 72 22 chr15 38600933 38601295 -47094459 + MLT1D LTR MaLR 126 505 0 519 217 204 0 chr15 38601618 38601775 -47093979 + MIR SINE MIR 2 190 -72 727 214 0 14 chr15 38601810 38601950 -47093804 - FRAM SINE Alu -38 138 1 501 272 113 72 chr15 38602149 38602658 -47093096 + Charlie8 DNA MER1_type 11 532 -1885 545 234 145 34 chr15 38603948 38604183 -47091571 - MIR SINE MIR 0 262 2 209 197 33 16 chr15 38604474 38604535 -47091219 + MER5B DNA MER1_type 4 65 -113 742 178 72 0 chr15 38604536 38604688 -47091066 + L1MB4 LINE L1 6010 6172 -8 319 202 109 50 chr15 38604694 38604813 -47090941 + MER5B DNA MER1_type 48 173 -5 243 254 0 0 chr15 38604826 38604885 -47090869 - MER5A DNA MER1_type 0 189 131 258 308 115 15 chr15 38604987 38605117 -47090637 + MER103 DNA DNA 3 145 -21 286 260 19 29 chr15 38605423 38605527 -47090227 + MIR3 SINE MIR 88 190 -18 659 223 128 1 chr15 38606595 38606868 -47088886 - MLT1A1 LTR MaLR 0 365 25 259 313 44 50 chr15 38607460 38607642 -47088112 - MIR SINE MIR -55 207 27 184 106 0 43 chr15 38607990 38608037 -47087717 + (TAAAAA)n Simple_repeat Simple_repeat 2 46 0 593 219 25 6 chr15 38608396 38608556 -47087198 - MER96B DNA MER1_type? 0 417 255 901 152 0 0 chr15 38608882 38609027 -47086727 - AluSg/x SINE Alu 0 310 166 319 339 36 16 chr15 38609804 38609996 -47085758 - MIR SINE MIR -46 216 21 225 0 0 0 chr15 38610657 38610682 -47085072 + (TAAAAA)n Simple_repeat Simple_repeat 1 25 0 1772 169 19 10 chr15 38612131 38612438 -47083316 + AluJb SINE Alu 1 310 -2 419 203 0 0 chr15 38614124 38614193 -47081561 + MER58A DNA MER1_type 3 71 -36 799 248 113 0 chr15 38614399 38614629 -47081125 - MIR SINE MIR 0 262 7 264 285 123 0 chr15 38615202 38615462 -47080292 - L2 LINE L2 -980 2334 2043 505 305 63 5 chr15 38616599 38616789 -47078965 + MIR SINE MIR 50 250 -12 257 286 24 0 chr15 38617148 38617232 -47078522 + L2 LINE L2 3166 3251 -62 445 282 172 0 chr15 38617519 38617695 -47078059 - MIR SINE MIR 0 262 57 21 0 0 0 chr15 38619855 38619876 -47075878 + AT_rich Low_complexity Low_complexity 1 21 0 626 235 27 0 chr15 38620595 38620744 -47075010 - MER96B DNA MER1_type? 0 175 23 685 140 78 45 chr15 38621294 38621444 -47074310 - MER53 DNA DNA 0 189 31 1916 56 16 12 chr15 38621444 38621694 -47074060 - L1PA8 LINE L1 -4 6168 5918 685 140 78 45 chr15 38621694 38621722 -47074032 - MER53 DNA DNA -158 31 5 712 262 12 6 chr15 38621898 38622070 -47073684 - MER5B DNA MER1_type -5 173 1 267 270 226 9 chr15 38622108 38622223 -47073531 + MIR SINE MIR 38 177 -85 2426 69 0 0 chr15 38622349 38622680 -47073074 + AluY SINE Alu 1 311 0 250 283 184 53 chr15 38622711 38623178 -47072576 + HAL1 LINE L1 202 729 -1778 244 212 141 98 chr15 38623204 38623388 -47072366 + HAL1 LINE L1 784 975 -1532 * 2462 249 95 67 chr15 38623386 38624661 -47071093 + HAL1 LINE L1 1187 2497 -10 465 209 19 89 chr15 38627015 38627173 -47068581 + MER103 DNA DNA 12 158 -8 231 375 21 0 chr15 38627236 38627332 -47068422 - MIR3 SINE MIR -53 155 58 1783 161 0 29 chr15 38628500 38628811 -47066943 + AluJo SINE Alu 1 302 -10 226 345 26 35 chr15 38629034 38629147 -47066607 + MIR SINE MIR 33 144 -64 272 231 103 13 chr15 38629480 38629558 -47066196 + MIR SINE MIR 18 102 -106 379 223 19 19 chr15 38629668 38629771 -47065983 - MIR SINE MIR -53 209 107 1518 225 19 45 chr15 38629783 38629983 -47065771 + LTR16A LTR ERVL 19 223 -227 1556 216 40 59 chr15 38629983 38630044 -47065710 - MLT1C LTR MaLR 0 467 406 2305 75 0 26 chr15 38630044 38630337 -47065417 + AluY SINE Alu 1 287 -24 462 18 0 0 chr15 38630337 38630392 -47065362 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2305 75 0 26 chr15 38630392 38630404 -47065350 + AluY SINE Alu 287 298 -13 1556 216 40 59 chr15 38630404 38630818 -47064936 - MLT1C LTR MaLR -61 406 1 1518 225 19 45 chr15 38630818 38631035 -47064719 + LTR16A LTR ERVL 223 425 -25 2351 105 0 3 chr15 38631536 38631841 -47063913 - AluSx SINE Alu -8 304 1 207 311 56 33 chr15 38632366 38632456 -47063298 - MIR SINE MIR -78 184 93 227 238 75 25 chr15 38632906 38632986 -47062768 + MIR SINE MIR 83 166 -96 216 0 0 0 chr15 38633164 38633188 -47062566 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 345 206 118 52 chr15 38633193 38633329 -47062425 - L2 LINE L2 -14 3299 3155 207 326 11 11 chr15 38633374 38633466 -47062288 - L2 LINE L2 -267 3046 2955 1202 104 16 16 chr15 38633470 38633652 -47062102 + Tigger1 DNA MER2_type 1461 1642 -776 1923 280 129 29 chr15 38633660 38634454 -47061300 - L2 LINE L2 -371 2943 2230 15280 112 14 53 chr15 38634454 38634979 -47060775 - Tigger1 DNA MER2_type 0 2418 1874 1588 182 0 27 chr15 38634979 38635275 -47060479 + AluJb SINE Alu 2 289 -23 15280 112 14 53 chr15 38635275 38636210 -47059544 - Tigger1 DNA MER2_type -544 1874 903 2519 72 0 0 chr15 38636210 38636517 -47059237 - AluY SINE Alu -4 307 1 15280 112 14 53 chr15 38636517 38637068 -47058686 - Tigger1 DNA MER2_type -1515 903 523 2221 81 0 50 chr15 38637068 38637389 -47058365 - AluSx SINE Alu -7 305 1 15280 112 14 53 chr15 38637389 38637893 -47057861 - Tigger1 DNA MER2_type -1895 523 1 1923 280 129 29 chr15 38637893 38638152 -47057602 - L2 LINE L2 -1084 2230 1784 207 327 106 0 chr15 38638817 38638921 -47056833 + MIR3 SINE MIR 76 190 -18 4009 9 0 0 chr15 38640685 38641129 -47054625 + L1HS LINE L1 5712 6155 0 654 255 116 90 chr15 38641607 38642141 -47053613 + L1ME3A LINE L1 4606 5164 -982 822 163 31 0 chr15 38642141 38642270 -47053484 + FLAM_C SINE Alu 1 133 0 654 255 116 90 chr15 38642270 38642434 -47053320 + L1ME3A LINE L1 5164 5322 -824 857 128 14 54 chr15 38642470 38642618 -47053136 + FRAM SINE Alu 20 161 -15 813 223 200 53 chr15 38642618 38642725 -47053029 + L1ME3A LINE L1 5332 5422 -748 2147 109 14 0 chr15 38642725 38643019 -47052735 + AluY SINE Alu 1 298 -13 813 223 200 53 chr15 38643019 38643462 -47052292 + L1ME3A LINE L1 5422 5963 -207 408 262 164 39 chr15 38644503 38644888 -47050866 + L1ME4a LINE L1 5600 6032 -89 576 116 0 0 chr15 38645545 38645640 -47050114 + Alu SINE Alu 215 309 -1 2233 89 9 29 chr15 38646815 38647131 -47048623 + AluY SINE Alu 1 310 -1 1374 152 30 17 chr15 38647732 38647962 -47047792 - AluJo SINE Alu -8 304 72 298 317 50 31 chr15 38649863 38650024 -47045730 - L2 LINE L2 -955 2359 2196 651 190 0 16 chr15 38651403 38651524 -47044230 - FLAM_A SINE Alu -13 120 2 945 147 83 0 chr15 38652590 38652747 -47043007 + Charlie1 DNA MER1_type 58 227 -2534 492 136 80 32 chr15 38652740 38652865 -47042889 + Charlie1 DNA MER1_type 2619 2749 -12 * 197 167 0 0 chr15 38654906 38654942 -47040812 + CT-rich Low_complexity Low_complexity 1 36 0 359 311 57 7 chr15 38656710 38656885 -47038869 - MIR SINE MIR -70 192 14 1889 81 0 64 chr15 38656933 38657228 -47038526 + AluSq SINE Alu 24 299 -14 26 0 0 0 chr15 38658081 38658107 -47037647 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 38658213 38658236 -47037518 + AT_rich Low_complexity Low_complexity 1 23 0 1367 287 97 42 chr15 38658285 38658542 -47037212 - L1MC4a LINE L1 -804 5342 5101 2028 133 0 0 chr15 38658542 38658836 -47036918 - AluSx SINE Alu -18 294 1 1367 287 97 42 chr15 38658836 38660002 -47035752 - L1MC4a LINE L1 -1045 5101 4498 23 0 0 0 chr15 38660078 38660101 -47035653 + AT_rich Low_complexity Low_complexity 1 23 0 360 298 61 24 chr15 38660153 38660379 -47035375 - L1MC4a LINE L1 -1865 4281 4054 2319 80 3 10 chr15 38660775 38661087 -47034667 + AluY SINE Alu 1 310 -1 308 216 45 8 chr15 38661193 38661327 -47034427 + (TA)n Simple_repeat Simple_repeat 1 139 0 1303 152 86 83 chr15 38662635 38662937 -47032817 + AluJb SINE Alu 1 303 -9 285 239 119 50 chr15 38663183 38663342 -47032412 - MIR3 SINE MIR -36 172 3 481 141 91 41 chr15 38663503 38663624 -47032130 + L1ME4a LINE L1 5977 6103 -18 237 306 0 0 chr15 38663727 38663789 -47031965 + MLT1L LTR MaLR 142 203 -412 416 353 18 12 chr15 38664320 38664490 -47031264 + MER91A DNA MER1_type 1 171 -25 452 292 101 36 chr15 38664971 38665139 -47030615 - MIR SINE MIR -6 256 78 225 0 0 0 chr15 38665439 38665464 -47030290 + (A)n Simple_repeat Simple_repeat 1 25 0 1704 141 39 14 chr15 38665468 38665626 -47030128 - AluSx SINE Alu -21 291 121 2181 99 7 0 chr15 38665626 38665929 -47029825 - AluSc SINE Alu -4 305 1 1704 141 39 14 chr15 38665929 38666054 -47029700 - AluSx SINE Alu -191 121 1 31 26 0 0 chr15 38667363 38667401 -47028353 + AT_rich Low_complexity Low_complexity 1 38 0 406 254 139 117 chr15 38667646 38668064 -47027690 + L2 LINE L2 2842 3268 -4 310 273 212 4 chr15 38668365 38668596 -47027158 + L1MC5 LINE L1 7644 7922 -39 1752 180 0 0 chr15 38668616 38668900 -47026854 + AluJb SINE Alu 1 284 -28 212 0 0 35 chr15 38668902 38668931 -47026823 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2343 73 0 3 chr15 38669055 38669358 -47026396 + AluY SINE Alu 1 302 -9 308 295 116 27 chr15 38669683 38669795 -47025959 + L2 LINE L2 3191 3312 -1 1020 195 0 0 chr15 38670383 38670552 -47025202 + FAM SINE Alu 1 169 -6 378 328 46 46 chr15 38671002 38671197 -47024557 + MIR SINE MIR 47 241 -21 290 314 65 16 chr15 38671650 38671774 -47023980 - MIR3 SINE MIR -49 159 30 1251 201 206 5 chr15 38672656 38673045 -47022709 + MLT1C LTR MaLR 1 467 0 280 225 75 25 chr15 38673056 38673136 -47022618 - L2 LINE L2 -6 3307 3224 207 370 32 36 chr15 38673280 38673499 -47022255 - L2 LINE L2 -184 3088 2871 260 300 160 10 chr15 38673604 38673704 -47022050 - MIR SINE MIR -27 235 121 2020 252 118 32 chr15 38675438 38675548 -47020206 - L1MC4 LINE L1 -238 7804 7705 1756 43 0 5 chr15 38675548 38675758 -47019996 - L1PA3 LINE L1 -3 6152 5944 2020 252 118 32 chr15 38675758 38676573 -47019181 - L1MC4 LINE L1 -337 7705 6800 643 218 37 65 chr15 38676969 38677185 -47018569 + L2 LINE L2 3103 3312 -1 266 322 220 22 chr15 38677225 38677452 -47018302 + L2 LINE L2 2994 3265 -7 2978 142 23 2 chr15 38678485 38678971 -47016783 + L1MB3 LINE L1 5688 6183 0 738 260 117 17 chr15 38679376 38679607 -47016147 - MIR SINE MIR -1 261 8 1679 172 22 81 chr15 38679675 38680083 -47015671 + MLT1B LTR MaLR 4 387 -3 188 284 90 30 chr15 38680172 38680239 -47015515 - MIR3 SINE MIR -14 194 124 293 294 274 4 chr15 38680346 38680594 -47015160 - L3 LINE CR1 -143 1434 1120 266 213 0 13 chr15 38680986 38681061 -47014693 + (CA)n Simple_repeat Simple_repeat 1 74 0 317 221 130 0 chr15 38681061 38681138 -47014616 + MIR SINE MIR 63 149 -113 1661 169 19 7 chr15 38681179 38681487 -47014267 - AluJo SINE Alu 0 312 1 202 343 19 48 chr15 38682860 38682965 -47012789 - L2 LINE L2 -21 3292 3191 783 265 36 4 chr15 38683025 38683278 -47012476 + MIR SINE MIR 1 261 -1 197 246 14 101 chr15 38683781 38683850 -47011904 + L2 LINE L2 3194 3256 -16 370 148 16 0 chr15 38684526 38684587 -47011167 - MER58 DNA MER1_type 0 2420 2359 694 200 67 24 chr15 38684880 38685045 -47010709 - MER5B DNA MER1_type -6 172 1 218 273 156 32 chr15 38685582 38685736 -47010018 - L2 LINE L2 -494 2820 2648 928 184 0 7 chr15 38687547 38687699 -47008055 - Tigger3(Golem) DNA MER2_type -2 3027 2877 298 259 0 0 chr15 38687700 38687758 -47007996 - Tigger3(Golem) DNA MER2_type -2970 59 2 206 214 0 143 chr15 38687828 38687873 -47007881 + L2 LINE L2 2991 3020 -252 1957 135 0 0 chr15 38687873 38688162 -47007592 + AluSx SINE Alu 1 289 -23 206 214 0 143 chr15 38688162 38688200 -47007554 + L2 LINE L2 3020 3062 -210 22 70 0 0 chr15 38690347 38690390 -47005364 + GC_rich Low_complexity Low_complexity 1 43 0 186 71 0 0 chr15 38690436 38690464 -47005290 + (CCGGG)n Simple_repeat Simple_repeat 3 30 0 250 254 0 0 chr15 38690904 38690959 -47004795 - L2 LINE L2 -236 3036 2982 593 277 44 44 chr15 38690959 38691208 -47004546 - MIR SINE MIR -8 254 6 393 214 98 45 chr15 38691676 38691788 -47003966 - MIR3 SINE MIR -15 193 76 544 221 144 46 chr15 38691829 38692023 -47003731 - MIR SINE MIR -44 218 4 221 313 130 35 chr15 38692181 38692296 -47003458 + L2 LINE L2 3146 3271 -1 246 242 155 62 chr15 38693099 38693260 -47002494 - L3b LINE CR1 -304 1279 1104 378 268 203 0 chr15 38693859 38693997 -47001757 - L2 LINE L2 -4 3268 3103 813 309 4 9 chr15 38693999 38694229 -47001525 - MIR SINE MIR -21 241 13 188 268 188 18 chr15 38694289 38694401 -47001353 - L2 LINE L2 -191 3081 2951 972 251 52 19 chr15 38695485 38695756 -46999998 - LTR16A1 LTR ERVL -17 440 161 1630 177 10 3 chr15 38696007 38696301 -46999453 + AluJb SINE Alu 1 296 -16 1063 339 102 13 chr15 38696429 38697063 -46998691 + L3 LINE CR1 713 1403 -174 412 302 44 25 chr15 38697163 38697322 -46998432 - MER5B DNA MER1_type 0 178 17 481 281 108 6 chr15 38697530 38697697 -46998057 + MIR SINE MIR 23 206 -56 367 343 157 24 chr15 38698247 38698337 -46997417 + MER91A DNA MER1_type 1 78 -118 3833 139 20 0 chr15 38698337 38698928 -46996826 + LTR26 LTR ERV1 1 603 0 367 343 157 24 chr15 38698928 38699003 -46996751 + MER91A DNA MER1_type 78 188 -8 1069 220 191 6 chr15 38699069 38699414 -46996340 + L2 LINE L2 2376 2784 -530 320 253 55 75 chr15 38699420 38699566 -46996188 + L2 LINE L2 3171 3313 0 513 209 45 9 chr15 38700630 38700740 -46995014 - MER81 DNA DNA 0 114 1 285 268 145 14 chr15 38700956 38701094 -46994660 + MER103 DNA DNA 4 159 -7 358 245 168 32 chr15 38701893 38702048 -46993706 + MIR3 SINE MIR 17 192 -16 1258 232 47 25 chr15 38702335 38702708 -46993046 - LTR16A LTR ERVL 0 457 61 465 256 173 16 chr15 38702948 38703139 -46992615 + MIR SINE MIR 28 248 -14 180 0 0 0 chr15 38704309 38704329 -46991425 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 303 304 72 48 chr15 38704354 38704479 -46991275 - L2 LINE L2 -1 3271 3144 247 274 0 0 chr15 38704638 38704689 -46991065 - L2 LINE L2 -540 2774 2724 3543 188 43 31 chr15 38704945 38705743 -46990011 + L1MB8 LINE L1 5350 6156 -22 261 0 0 0 chr15 38705773 38705802 -46989952 + (CA)n Simple_repeat Simple_repeat 2 30 0 1028 184 42 35 chr15 38707218 38707501 -46988253 - MER33 DNA MER1_type -22 302 18 1037 146 0 12 chr15 38707784 38707955 -46987799 - AluJb SINE Alu -40 272 104 214 254 0 18 chr15 38708867 38708922 -46986832 + GA-rich Low_complexity Low_complexity 2 55 0 1963 147 0 3 chr15 38709218 38709531 -46986223 - AluJb SINE Alu 0 312 1 2770 252 89 38 chr15 38709885 38710928 -46984826 - HAL1 LINE L1 -12 2495 1400 3174 148 43 21 chr15 38710930 38711394 -46984360 + MER44D DNA MER2_type 1 535 -1952 2723 138 24 0 chr15 38711394 38711814 -46983940 - MSTB1 LTR MaLR -2 430 1 3174 148 43 21 chr15 38711814 38711883 -46983871 + MER44D DNA MER2_type 535 601 -4 1797 283 152 78 chr15 38711890 38713189 -46982565 - HAL1 LINE L1 -1112 1395 1 596 301 11 0 chr15 38713189 38713372 -46982382 + MIR SINE MIR 78 262 0 202 356 113 26 chr15 38713446 38713640 -46982114 + L3b LINE CR1 1342 1552 -31 2196 75 0 14 chr15 38714568 38714863 -46980891 + AluY SINE Alu 1 291 -20 3585 145 18 29 chr15 38715518 38716172 -46979582 + L1MB7 LINE L1 5523 6169 -15 1907 125 14 0 chr15 38716173 38716461 -46979293 - AluSx SINE Alu -15 297 6 272 286 0 0 chr15 38717054 38717117 -46978637 + L2 LINE L2 3210 3272 0 519 272 49 6 chr15 38717211 38717373 -46978381 + MIR SINE MIR 92 260 -2 411 325 118 18 chr15 38717434 38717662 -46978092 + L1ME4a LINE L1 5813 6063 -58 2390 62 0 3 chr15 38717828 38718135 -46977619 + AluY SINE Alu 2 307 -4 231 303 113 21 chr15 38719520 38719662 -46976092 + L3 LINE CR1 1131 1285 -292 2205 100 3 3 chr15 38720261 38720572 -46975182 + AluSp SINE Alu 1 311 -2 714 124 297 0 chr15 38721265 38721410 -46974344 + MER5A DNA MER1_type 1 188 -1 1870 154 168 8 chr15 38723205 38723574 -46972180 - MSTA LTR MaLR 0 428 1 320 276 145 7 chr15 38723834 38723979 -46971775 + L1ME4a LINE L1 5865 6029 -92 2218 196 65 34 chr15 38724471 38724975 -46970779 - MLT2B1 LTR ERVL 0 520 1 357 208 115 35 chr15 38728071 38728204 -46967550 + MIR SINE MIR 45 196 -66 596 291 108 4 chr15 38729393 38729608 -46966146 + MIR SINE MIR 11 239 -23 215 368 11 0 chr15 38729849 38729944 -46965810 + MIR SINE MIR 39 134 -128 248 183 146 24 chr15 38731125 38731207 -46964547 - LTR33 LTR ERVL -376 145 54 275 309 149 17 chr15 38732028 38732209 -46963545 - MIR3 SINE MIR -1 207 3 614 271 13 7 chr15 38732649 38732800 -46962954 + L2 LINE L2 3162 3313 0 2154 103 7 3 chr15 38734093 38734393 -46961361 + AluSq SINE Alu 1 301 -12 686 151 221 23 chr15 38735266 38735438 -46960316 + MER96B DNA MER1_type? 171 376 -41 239 284 11 32 chr15 38736969 38737064 -46958690 - MIR SINE MIR -76 132 40 242 294 59 39 chr15 38737313 38737415 -46958339 - L3 LINE CR1 -22 1555 1452 338 332 14 2 chr15 38737536 38737666 -46958088 + MIR SINE MIR 27 157 -65 2093 153 35 72 chr15 38738933 38739418 -46956336 + MLT1C LTR MaLR 1 467 0 205 262 98 82 chr15 38739452 38739528 -46956226 - MIR SINE MIR -76 132 98 428 233 78 0 chr15 38739528 38739631 -46956123 + MER81 DNA DNA 2 112 -2 205 262 98 82 chr15 38739631 38739693 -46956061 - MIR SINE MIR -110 98 38 2518 114 22 6 chr15 38741831 38742189 -46953565 + THE1B LTR MaLR 1 364 0 246 229 16 0 chr15 38742444 38742505 -46953249 - MIR SINE MIR -63 199 138 209 300 11 67 chr15 38745531 38745621 -46950133 + MIR SINE MIR 27 111 -97 2846 94 3 0 chr15 38746069 38746432 -46949322 + THE1B LTR MaLR 1 364 0 184 324 60 108 chr15 38746721 38747184 -46948570 + L2 LINE L2 2818 3258 -14 509 260 81 23 chr15 38747191 38747364 -46948390 + MIR3 SINE MIR 15 197 -11 318 268 134 38 chr15 38748324 38748481 -46947273 - MIR3 SINE MIR -17 191 20 450 0 0 0 chr15 38752793 38752843 -46942911 + (TG)n Simple_repeat Simple_repeat 2 51 0 318 282 38 46 chr15 38753285 38753416 -46942338 + MIR3 SINE MIR 76 205 -3 309 183 33 0 chr15 38753878 38753938 -46941816 + MIR SINE MIR 88 149 -59 335 267 92 62 chr15 38753938 38754124 -46941630 - MER112 DNA MER1_type -12 248 52 1989 139 7 0 chr15 38754124 38754426 -46941328 - AluSx SINE Alu -8 304 1 335 267 92 62 chr15 38754426 38754479 -46941275 - MER112 DNA MER1_type -208 52 2 401 294 0 0 chr15 38755348 38755450 -46940304 + MIR SINE MIR 106 207 -55 238 208 236 0 chr15 38756280 38756352 -46939402 + MIR3 SINE MIR 110 198 -10 224 290 145 36 chr15 38756814 38757007 -46938747 - MIR SINE MIR -6 256 43 313 251 55 55 chr15 38758016 38758179 -46937575 + MIR SINE MIR 24 186 -76 277 239 33 43 chr15 38761045 38761137 -46934617 + MER5B DNA MER1_type 88 178 0 880 157 131 30 chr15 38763553 38763751 -46932003 - MER20 DNA MER1_type -1 218 1 824 140 0 44 chr15 38764250 38764386 -46931368 - FLAM_A SINE Alu -3 130 1 21 0 0 0 chr15 38764391 38764412 -46931342 + AT_rich Low_complexity Low_complexity 1 21 0 1325 226 75 47 chr15 38764516 38764901 -46930853 + MSTD LTR MaLR 1 396 0 1156 198 0 35 chr15 38765748 38765980 -46929774 + MER58A DNA MER1_type 1 224 0 493 276 125 5 chr15 38765980 38766161 -46929593 - MIR SINE MIR -39 223 16 2587 64 0 3 chr15 38766216 38766528 -46929226 - AluY SINE Alu 0 311 1 4325 159 70 36 chr15 38767395 38767954 -46927800 + L1MB7 LINE L1 4745 5283 -901 1990 157 3 0 chr15 38767954 38768253 -46927501 + AluSx SINE Alu 1 300 -12 4325 159 70 36 chr15 38768253 38768583 -46927171 + L1MB7 LINE L1 5283 5600 -584 2357 94 0 3 chr15 38768583 38768882 -46926872 + AluSq SINE Alu 1 298 -15 4325 159 70 36 chr15 38768882 38769102 -46926652 + L1MB7 LINE L1 5600 5811 -373 426 20 0 0 chr15 38769102 38769153 -46926601 + (CA)n Simple_repeat Simple_repeat 1 51 0 4325 159 70 36 chr15 38769153 38769451 -46926303 + L1MB7 LINE L1 5811 6184 0 974 259 108 16 chr15 38770722 38771092 -46924662 + L1MC4a LINE L1 5425 5828 -1980 275 293 85 30 chr15 38772000 38772164 -46923590 + MIR SINE MIR 20 192 -70 562 201 215 0 chr15 38773506 38773650 -46922104 - MER5A DNA MER1_type -6 183 9 321 357 6 23 chr15 38774383 38774554 -46921200 + MIR3 SINE MIR 39 206 -2 1206 163 58 23 chr15 38775228 38775486 -46920268 + L1MB7 LINE L1 5902 6168 -16 203 206 29 73 chr15 38775583 38775651 -46920103 + MIR SINE MIR 186 250 -12 1324 230 100 24 chr15 38777526 38777895 -46917859 + MLT1I LTR MaLR 1 397 -12 495 336 15 39 chr15 38778005 38778245 -46917509 + MIR SINE MIR 11 248 -14 195 42 0 0 chr15 38778266 38778290 -46917464 + (CAT)n Simple_repeat Simple_repeat 3 26 0 2681 85 6 6 chr15 38778447 38778800 -46916954 + THE1A LTR MaLR 1 353 -2 303 224 75 45 chr15 38779439 38779573 -46916181 + MIR3 SINE MIR 6 143 -65 394 313 128 19 chr15 38780004 38780269 -46915485 - L3 LINE CR1 -94 1483 1190 568 266 18 48 chr15 38780978 38781207 -46914547 - MIR SINE MIR -13 249 28 393 203 0 0 chr15 38781905 38781979 -46913775 - MIR3 SINE MIR -53 155 82 316 203 34 102 chr15 38782790 38782870 -46912884 - MER103 DNA DNA -44 122 51 2144 120 27 0 chr15 38782870 38783169 -46912585 + AluSx SINE Alu 1 307 -5 316 203 34 102 chr15 38783169 38783206 -46912548 - MER103 DNA DNA -115 51 13 417 276 81 69 chr15 38783218 38783638 -46912116 + L2 LINE L2 2553 2977 -337 247 65 43 0 chr15 38783853 38783899 -46911855 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 954 134 0 9 chr15 38783903 38784163 -46911591 + AluJb SINE Alu 1 303 -9 396 289 118 20 chr15 38785530 38785734 -46910020 - MIR SINE MIR -35 227 4 1239 112 0 78 chr15 38785819 38786024 -46909730 - MER1B DNA MER1_type 0 339 151 376 183 0 0 chr15 38786021 38786081 -46909673 - MER1B DNA MER1_type -276 61 2 * 681 261 58 13 chr15 38788837 38789063 -46906691 - L3 LINE CR1 -757 820 585 1012 123 11 48 chr15 38790351 38790538 -46905216 - L1MC3 LINE L1 -194 7591 7412 265 189 0 0 chr15 38790678 38790731 -46905023 - L1MC3 LINE L1 -686 7099 7047 3738 177 82 58 chr15 38791126 38792047 -46903707 - L1MC3 LINE L1 -18 7767 6824 228 330 119 0 chr15 38792117 38792235 -46903519 - MIR3 SINE MIR -11 197 66 936 199 11 0 chr15 38792714 38792913 -46902841 + L1M4 LINE L1 4868 5068 -1078 24 0 0 0 chr15 38792990 38793014 -46902740 + AT_rich Low_complexity Low_complexity 1 24 0 2272 182 55 0 chr15 38793915 38794527 -46901227 + L1M4 LINE L1 5040 5690 -494 7598 207 72 54 chr15 38797043 38797512 -46898242 + L1MC/D LINE L1 2673 3132 -3110 2770 51 23 3 chr15 38797512 38797862 -46897892 + L1PA8 LINE L1 5816 6172 0 7598 207 72 54 chr15 38797862 38799326 -46896428 + L1MC/D LINE L1 3132 4568 -1674 2262 124 0 6 chr15 38799326 38799641 -46896113 + AluSq SINE Alu 1 313 0 7598 207 72 54 chr15 38799641 38800165 -46895589 + L1MC/D LINE L1 4568 5081 -1161 261 0 0 0 chr15 38800165 38800194 -46895560 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7598 207 72 54 chr15 38800194 38800673 -46895081 + L1MC/D LINE L1 5081 5678 -564 2812 172 51 12 chr15 38800713 38801300 -46894454 + L1MD1 LINE L1 5633 6242 0 198 0 0 0 chr15 38801326 38801348 -46894406 + (A)n Simple_repeat Simple_repeat 1 22 0 2126 129 0 7 chr15 38801869 38802163 -46893591 - AluSx SINE Alu -6 306 15 2189 138 0 0 chr15 38802726 38803031 -46892723 - AluSx SINE Alu -7 305 1 1736 170 14 0 chr15 38803474 38803762 -46891992 + AluJb SINE Alu 1 292 -20 213 160 60 20 chr15 38805909 38805959 -46889795 + L2 LINE L2 3262 3313 0 237 329 55 76 chr15 38806092 38806381 -46889373 + L2 LINE L2 2947 3229 -43 401 0 20 0 chr15 38806876 38806925 -46888829 + (CA)n Simple_repeat Simple_repeat 2 51 0 279 191 32 0 chr15 38806945 38807008 -46888746 - MER20 DNA MER1_type -4 215 151 2282 205 45 66 chr15 38808090 38808202 -46887552 - MLT1F LTR MaLR 0 542 429 2341 109 0 3 chr15 38808202 38808515 -46887239 + AluSx SINE Alu 1 312 0 2282 205 45 66 chr15 38808515 38808934 -46886820 - MLT1F LTR MaLR -113 429 22 287 290 88 51 chr15 38809990 38810280 -46885474 + L2 LINE L2 2758 3058 -214 637 209 16 8 chr15 38810324 38810453 -46885301 - FLAM_A SINE Alu -2 131 2 241 333 0 0 chr15 38810506 38810584 -46885170 + L2 LINE L2 3193 3270 -2 257 340 75 34 chr15 38811627 38811774 -46883980 + L2 LINE L2 3116 3268 -4 246 105 0 0 chr15 38812140 38812178 -46883576 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 125 22 33 chr15 38813346 38813714 -46882040 - THE1B LTR MaLR 0 364 1 294 29 0 0 chr15 38813827 38813862 -46881892 + (CA)n Simple_repeat Simple_repeat 2 36 0 1910 159 30 0 chr15 38813888 38814217 -46881537 + AluSx SINE Alu 2 339 0 1020 210 81 66 chr15 38814223 38814428 -46881326 - L1MC5 LINE L1 -49 7912 7711 2174 132 0 0 chr15 38814428 38814731 -46881023 + AluSq SINE Alu 1 303 -10 1020 210 81 66 chr15 38814731 38814934 -46880820 - L1MC5 LINE L1 -250 7711 7498 247 309 101 118 chr15 38814967 38815333 -46880421 + L2 LINE L2 2900 3259 -13 210 300 276 33 chr15 38815737 38815947 -46879807 - L2 LINE L2 0 3272 3012 1990 124 0 0 chr15 38816767 38817034 -46878720 + AluSx SINE Alu 41 307 -5 21 0 0 0 chr15 38817132 38817153 -46878601 + AT_rich Low_complexity Low_complexity 1 21 0 2079 132 0 7 chr15 38817366 38817662 -46878092 + AluSx SINE Alu 1 294 -18 623 56 0 22 chr15 38817663 38817752 -46878002 + (GGAAA)n Simple_repeat Simple_repeat 4 90 0 21 36 0 0 chr15 38818015 38818043 -46877711 + AT_rich Low_complexity Low_complexity 1 28 0 798 185 11 121 chr15 38818060 38818325 -46877429 + MER102b DNA MER1_type 104 339 -2 221 323 40 24 chr15 38818703 38818827 -46876927 - L2 LINE L2 -527 2787 2662 2290 136 47 8 chr15 38821596 38821957 -46873797 + THE1C LTR MaLR 1 375 0 443 344 148 30 chr15 38822020 38822831 -46872923 + L2 LINE L2 1763 2669 -645 254 311 87 50 chr15 38824308 38824469 -46871285 - MIR SINE MIR -86 176 10 2065 152 39 39 chr15 38824555 38824916 -46870838 + THE1B LTR MaLR 4 364 0 22 56 0 0 chr15 38825893 38825929 -46869825 + AT_rich Low_complexity Low_complexity 1 36 0 385 81 81 0 chr15 38825929 38825991 -46869763 - MER41B LTR ERV1 -88 547 481 356 282 166 25 chr15 38827141 38827418 -46868336 + L1ME4a LINE L1 5633 5948 -173 764 272 73 0 chr15 38829120 38829326 -46866428 + MER58A DNA MER1_type 4 224 0 201 245 0 57 chr15 38830804 38830857 -46864897 - MIR3 SINE MIR -151 57 8 308 270 0 56 chr15 38831033 38831122 -46864632 + L2 LINE L2 3007 3090 -182 224 320 78 29 chr15 38831470 38831573 -46864181 + L2 LINE L2 3153 3260 -12 451 274 78 87 chr15 38831573 38831807 -46863947 + L1ME3 LINE L1 35 270 -5935 4796 180 24 28 chr15 38831807 38831843 -46863911 + L1MC1 LINE L1 5405 5440 -893 2075 127 3 0 chr15 38831843 38832134 -46863620 + AluSx SINE Alu 1 292 -20 4796 180 24 28 chr15 38832134 38833024 -46862730 + L1MC1 LINE L1 5440 6327 -6 451 274 78 87 chr15 38833024 38833750 -46862004 + L1ME3 LINE L1 270 936 -5269 2145 139 3 0 chr15 38833750 38834052 -46861702 - AluSx SINE Alu -9 303 1 451 274 78 87 chr15 38834052 38834154 -46861600 + L1ME3 LINE L1 936 1037 -5168 1458 167 4 17 chr15 38834154 38834394 -46861360 - AluJo SINE Alu -75 237 1 706 311 74 13 chr15 38834498 38834562 -46861192 + L1ME3 LINE L1 1102 1161 -5235 377 39 20 0 chr15 38834562 38834613 -46861141 + (CA)n Simple_repeat Simple_repeat 2 53 0 706 311 74 13 chr15 38834613 38835005 -46860749 + L1ME3 LINE L1 1161 1586 -4810 239 300 10 10 chr15 38835075 38835175 -46860579 + L1ME3 LINE L1 1696 1795 -4601 * 996 268 77 11 chr15 38835173 38835550 -46860204 + L1ME3 LINE L1 4486 4887 -1328 1503 273 60 53 chr15 38835551 38836217 -46859537 + L1ME3 LINE L1 5561 6231 0 1728 163 10 7 chr15 38837139 38837434 -46858320 - AluJo SINE Alu -11 301 6 1749 241 72 30 chr15 38837931 38838474 -46857280 + L1ME3 LINE L1 5597 6162 0 1823 161 14 0 chr15 38839500 38839785 -46855969 + AluJb SINE Alu 1 289 -23 207 0 0 0 chr15 38840215 38840238 -46855516 + (T)n Simple_repeat Simple_repeat 1 23 0 2112 144 0 0 chr15 38840752 38841051 -46854703 + AluSx SINE Alu 1 299 -13 201 317 61 12 chr15 38841371 38841453 -46854301 - MIR SINE MIR -76 132 47 519 220 130 6 chr15 38842138 38842292 -46853462 + MIR SINE MIR 62 233 -29 270 0 0 0 chr15 38844771 38844801 -46850953 + (T)n Simple_repeat Simple_repeat 1 30 0 425 299 41 21 chr15 38845615 38845809 -46849945 - L1M4 LINE L1 -2911 3235 3038 579 319 32 19 chr15 38846074 38846290 -46849464 - MLT1J LTR MaLR -292 219 1 311 332 59 59 chr15 38846290 38846679 -46849075 - L1M4 LINE L1 -3189 2957 2569 26 0 0 0 chr15 38846895 38846921 -46848833 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr15 38846992 38847013 -46848741 + (A)n Simple_repeat Simple_repeat 1 21 0 329 266 102 50 chr15 38847162 38848758 -46846996 - HAL1 LINE L1 -343 2164 420 227 319 77 11 chr15 38848986 38849077 -46846677 - HAL1 LINE L1 -2371 136 40 1684 94 22 0 chr15 38850576 38850799 -46844955 + MER30 DNA MER1_type 3 230 0 2062 125 0 7 chr15 38851401 38851696 -46844058 + AluSx SINE Alu 1 293 -19 1768 145 7 10 chr15 38852315 38852604 -46843150 + AluJo SINE Alu 1 288 -24 211 321 0 0 chr15 38852795 38852851 -46842903 + L2 LINE L2 3217 3272 0 424 305 25 40 chr15 38852892 38853092 -46842662 - MER117 DNA MER1_type 0 197 1 2316 110 0 0 chr15 38853372 38853681 -46842073 - AluSc SINE Alu 0 309 1 408 249 139 117 chr15 38855651 38856069 -46839685 + L2 LINE L2 2842 3268 -4 314 276 217 0 chr15 38856382 38856599 -46839155 + L1MC5 LINE L1 7659 7922 -39 1868 180 0 0 chr15 38856619 38856903 -46838851 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr15 38856905 38856925 -46838829 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 921 124 149 25 chr15 38857058 38857219 -46838535 + AluSq SINE Alu 1 181 -132 180 0 0 0 chr15 38858048 38858068 -46837686 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 260 304 72 48 chr15 38858093 38858218 -46837536 - L2 LINE L2 -1 3271 3144 226 274 0 0 chr15 38858377 38858428 -46837326 - L2 LINE L2 -540 2774 2724 3587 188 43 31 chr15 38858684 38859482 -46836272 + L1MB8 LINE L1 5350 6156 -22 225 0 0 0 chr15 38859512 38859537 -46836217 + (CA)n Simple_repeat Simple_repeat 2 26 0 1049 184 42 35 chr15 38860953 38861236 -46834518 - MER33 DNA MER1_type -22 302 18 1102 149 0 22 chr15 38861511 38861692 -46834062 - AluJb SINE Alu -34 278 102 214 254 0 18 chr15 38862602 38862657 -46833097 + GA-rich Low_complexity Low_complexity 2 55 0 1920 166 0 6 chr15 38862953 38863266 -46832488 - AluJb SINE Alu 0 312 2 258 32 0 0 chr15 38863292 38863323 -46832431 + (TG)n Simple_repeat Simple_repeat 2 32 0 2211 125 22 33 chr15 38863436 38863804 -46831950 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 38864974 38865012 -46830742 + (T)n Simple_repeat Simple_repeat 1 38 0 215 340 75 34 chr15 38865378 38865525 -46830229 - L2 LINE L2 -4 3268 3116 852 191 60 0 chr15 38866858 38867026 -46828728 - MER5B DNA MER1_type 0 178 1 2399 99 0 3 chr15 38867905 38868219 -46827535 - AluSq SINE Alu 0 313 1 2199 95 17 3 chr15 38869574 38869870 -46825884 - AluSx SINE Alu -12 300 1 345 278 74 28 chr15 38870651 38870827 -46824927 - MIR SINE MIR -14 248 65 372 177 127 0 chr15 38871028 38871107 -46824647 - 5S rRNA rRNA -31 90 2 2219 126 3 0 chr15 38871192 38871494 -46824260 + AluSx SINE Alu 1 303 -9 609 269 25 35 chr15 38872019 38872220 -46823534 - MIR SINE MIR -16 246 48 21 57 0 0 chr15 38872220 38872255 -46823499 + AT_rich Low_complexity Low_complexity 1 35 0 908 206 129 101 chr15 38872267 38872628 -46823126 - L1ME2 LINE L1 -131 6031 5641 2105 130 16 0 chr15 38872628 38872935 -46822819 - AluSx SINE Alu 0 312 1 908 206 129 101 chr15 38872935 38873142 -46822612 - L1ME2 LINE L1 -521 5641 5441 289 351 90 8 chr15 38873206 38873340 -46822414 - L2 LINE L2 -16 3256 3112 2224 117 0 0 chr15 38874142 38874442 -46821312 - AluSg SINE Alu -9 301 2 362 231 56 44 chr15 38874488 38874648 -46821106 - L1ME4a LINE L1 -16 6105 5944 413 163 35 12 chr15 38875329 38875415 -46820339 - L1MA5 LINE L1 0 6300 6213 749 221 194 5 chr15 38875509 38875726 -46820028 - L1MA5A LINE L1 -86 6211 5954 690 147 0 96 chr15 38876085 38876221 -46819533 + FLAM_C SINE Alu 2 124 -19 1639 167 31 21 chr15 38876361 38876649 -46819105 - AluJo SINE Alu -17 295 5 34 0 0 0 chr15 38876896 38876930 -46818824 + AT_rich Low_complexity Low_complexity 1 34 0 2219 123 7 3 chr15 38877093 38877394 -46818360 - AluSx SINE Alu -10 302 1 1133 158 0 5 chr15 38877462 38877652 -46818102 - AluJo SINE Alu -2 310 122 405 354 128 10 chr15 38878335 38878844 -46816910 - L2 LINE L2 -12 3301 2733 185 270 20 40 chr15 38878845 38878945 -46816809 - L2 LINE L2 -1099 2215 2118 * 300 273 0 11 chr15 38878932 38879020 -46816734 + MER5A DNA MER1_type 17 103 -86 437 344 46 12 chr15 38879047 38879370 -46816384 - L2 LINE L2 -1171 2143 1810 233 297 0 0 chr15 38880614 38880688 -46815066 + A-rich Low_complexity Low_complexity 1 74 0 1803 174 20 64 chr15 38881527 38881918 -46813836 - MLT1A2 LTR MaLR 0 374 1 7535 154 83 32 chr15 38882102 38883606 -46812148 + L1MC3 LINE L1 6203 7783 -2 2364 71 3 14 chr15 38883625 38883920 -46811834 + AluSg SINE Alu 1 292 -18 237 287 156 16 chr15 38885101 38885223 -46810531 + L2 LINE L2 3134 3272 0 2062 134 37 0 chr15 38885360 38885659 -46810095 + AluSx SINE Alu 1 310 -2 619 257 131 5 chr15 38885731 38885953 -46809801 - MIR SINE MIR 0 262 13 288 306 63 9 chr15 38886989 38887100 -46808654 + L3 LINE CR1 334 450 -1127 213 267 15 107 chr15 38887126 38887257 -46808497 - L2 LINE L2 -9 3263 3145 1658 185 80 25 chr15 38887347 38887709 -46808045 - MLT1D LTR MaLR -121 384 3 230 307 11 23 chr15 38887910 38887998 -46807756 - MIR SINE MIR -164 98 12 223 330 36 9 chr15 38888005 38888117 -46807637 + L3 LINE CR1 714 828 -749 254 25 0 50 chr15 38888199 38888239 -46807515 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1528 147 7 50 chr15 38889315 38889614 -46806140 + AluJo SINE Alu 1 286 -26 474 204 0 0 chr15 38889614 38889717 -46806037 + GA-rich Low_complexity Low_complexity 2 104 0 2286 91 10 3 chr15 38889743 38890040 -46805714 + AluSg SINE Alu 1 299 -11 639 303 26 46 chr15 38890073 38890380 -46805374 + L3 LINE CR1 1214 1514 -63 2235 119 3 3 chr15 38891157 38891467 -46804287 + AluSx SINE Alu 1 310 -2 294 337 205 0 chr15 38892543 38892733 -46803021 - MIR SINE MIR -6 256 28 221 339 69 13 chr15 38893249 38893482 -46802272 + L2 LINE L2 2459 2704 -610 2269 120 0 7 chr15 38894040 38894348 -46801406 + AluSx SINE Alu 4 309 -3 377 305 63 21 chr15 38894484 38894674 -46801080 - L1MC4a LINE L1 -1878 5930 5733 305 310 35 18 chr15 38894808 38894921 -46800833 + MER5A DNA MER1_type 63 177 -12 1169 219 108 84 chr15 38895166 38895499 -46800255 + MLT1J LTR MaLR 1 351 -160 2653 129 44 5 chr15 38895499 38895909 -46799845 + MSTB LTR MaLR 1 426 0 1169 219 108 84 chr15 38895909 38896073 -46799681 + MLT1J LTR MaLR 351 510 -1 198 235 12 86 chr15 38896081 38896162 -46799592 + L2 LINE L2 3225 3299 -14 442 233 83 45 chr15 38898294 38898427 -46797327 + MIR SINE MIR 16 153 -109 595 163 51 0 chr15 38898512 38898610 -46797144 - U6 snRNA snRNA -2 105 3 957 50 44 12 chr15 38899171 38899331 -46796423 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 460 267 124 73 chr15 38899407 38899945 -46795809 - L2 LINE L2 -1 3312 2728 968 175 17 79 chr15 38900839 38901079 -46794675 + AluJb SINE Alu 2 226 -86 322 311 38 0 chr15 38901194 38901300 -46794454 + MIR SINE MIR 42 151 -111 1006 186 27 5 chr15 38901301 38901322 -46794432 + AluJb SINE Alu 111 130 -182 2174 68 28 86 chr15 38901322 38901647 -46794107 + AluSp SINE Alu 1 306 -7 1006 186 27 5 chr15 38901647 38901813 -46793941 + AluJb SINE Alu 130 302 -10 210 184 0 0 chr15 38901813 38901851 -46793903 + MIR SINE MIR 192 229 -33 455 257 128 80 chr15 38903854 38904103 -46791651 + MLT1L LTR MaLR 308 568 -47 254 207 35 81 chr15 38904182 38904269 -46791485 - L1MC4a LINE L1 -537 5584 5502 236 348 81 2 chr15 38904562 38904729 -46791025 + MIR3 SINE MIR 5 185 -54 448 291 26 101 chr15 38905204 38905582 -46790172 + MLT1H LTR MaLR 39 388 -161 2250 121 0 3 chr15 38905628 38905933 -46789821 + AluSx SINE Alu 1 304 -8 309 123 0 0 chr15 38906434 38906491 -46789263 - AluSp/q SINE Alu -3 300 244 22 35 0 0 chr15 38906688 38906717 -46789037 + AT_rich Low_complexity Low_complexity 1 29 0 1675 171 1 38 chr15 38908455 38908832 -46786922 + L1MB5 LINE L1 5812 6180 0 576 272 6 25 chr15 38909042 38909200 -46786554 - MIR SINE MIR -106 156 2 1021 200 27 32 chr15 38909814 38910034 -46785720 - MER20 DNA MER1_type 0 219 1 190 204 136 0 chr15 38910059 38910103 -46785651 - MIR SINE MIR -90 172 123 1519 143 98 4 chr15 38910247 38910492 -46785262 - AluSx SINE Alu -44 268 1 196 208 21 0 chr15 38910937 38910985 -46784769 - L2 LINE L2 -1 3312 3264 362 276 159 7 chr15 38911242 38911387 -46784367 + MIR SINE MIR 12 178 -84 1753 148 7 54 chr15 38911805 38912148 -46783606 + AluJb SINE Alu 1 329 0 2231 119 0 10 chr15 38912149 38912459 -46783295 + AluY SINE Alu 4 310 -1 28 79 0 0 chr15 38914041 38914104 -46781650 + GC_rich Low_complexity Low_complexity 1 63 0 219 158 26 0 chr15 38914502 38914540 -46781214 - L2 LINE L2 -13 3300 3262 235 304 43 0 chr15 38914597 38914666 -46781088 - MIR SINE MIR -92 116 45 295 277 24 0 chr15 38914701 38914784 -46780970 + MIR SINE MIR 62 146 -116 2344 89 13 0 chr15 38914836 38915139 -46780615 - AluSq SINE Alu -6 307 1 536 115 13 0 chr15 38915236 38915314 -46780440 + MADE1 DNA Mariner 2 80 0 1690 154 12 71 chr15 38915800 38915949 -46779805 + AluJb SINE Alu 3 124 -188 483 18 0 0 chr15 38915949 38916005 -46779749 + (CA)n Simple_repeat Simple_repeat 1 56 0 1690 154 12 71 chr15 38916005 38916179 -46779575 + AluJb SINE Alu 124 307 -5 496 213 6 33 chr15 38916185 38916368 -46779386 + GA-rich Low_complexity Low_complexity 3 180 0 * 716 92 0 82 chr15 38916349 38916545 -46779209 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2305 121 0 6 chr15 38917600 38917913 -46777841 + AluSx SINE Alu 1 311 -1 317 327 63 16 chr15 38918143 38918397 -46777357 - LTR16C LTR ERVL 0 491 226 418 288 124 57 chr15 38918556 38918910 -46776844 + LTR41 LTR ERVL 231 608 -165 352 299 203 32 chr15 38919215 38919466 -46776288 + L2 LINE L2 2977 3270 -2 2177 86 7 0 chr15 38919710 38920013 -46775741 + AluSq SINE Alu 5 309 0 2250 86 7 0 chr15 38920028 38920358 -46775396 + AluSx SINE Alu 1 332 0 2023 162 0 16 chr15 38921078 38921393 -46774361 + AluJb SINE Alu 1 310 -2 2417 102 0 0 chr15 38921588 38921891 -46773863 + AluSx SINE Alu 1 303 -9 1330 177 4 17 chr15 38922239 38922476 -46773278 + AluJb SINE Alu 78 311 -1 213 214 71 0 chr15 38922478 38922534 -46773220 - MIR SINE MIR -82 180 121 1725 162 3 69 chr15 38923313 38923647 -46772107 + AluJo SINE Alu 1 312 0 2384 88 3 3 chr15 38923906 38924211 -46771543 - AluSx SINE Alu -5 307 3 2265 128 3 3 chr15 38924213 38924525 -46771229 - AluSx SINE Alu 0 312 1 352 164 14 41 chr15 38924545 38924618 -46771136 + ORSL DNA AcHobo 2 72 -203 844 166 0 21 chr15 38924623 38924768 -46770986 - FLAM_C SINE Alu -1 142 1 865 159 53 11 chr15 38924773 38924962 -46770792 + ORSL DNA AcHobo 79 275 0 502 219 51 118 chr15 38924972 38925027 -46770727 + MER5B DNA MER1_type 3 60 -118 2706 36 3 0 chr15 38925027 38925333 -46770421 + AluY SINE Alu 1 307 -4 502 219 51 118 chr15 38925333 38925455 -46770299 + MER5B DNA MER1_type 60 168 -10 188 217 29 58 chr15 38925739 38925808 -46769946 - L2 LINE L2 -629 2685 2619 438 337 29 12 chr15 38977435 38977607 -46718147 + MIR SINE MIR 75 249 -13 949 188 83 0 chr15 38980337 38980529 -46715225 + MER3 DNA MER1_type 2 209 0 200 148 0 66 chr15 38981269 38981302 -46714452 + (TTAA)n Simple_repeat Simple_repeat 4 33 -27 1283 31 0 6 chr15 38981302 38981462 -46714292 + L1PA4 LINE L1 5997 6155 0 200 148 0 66 chr15 38981462 38981489 -46714265 + (TTAA)n Simple_repeat Simple_repeat 33 60 0 2347 77 0 37 chr15 38981777 38982100 -46713654 + AluY SINE Alu 1 311 0 252 0 0 0 chr15 38983650 38983678 -46712076 + (A)n Simple_repeat Simple_repeat 1 28 0 362 293 169 26 chr15 38984052 38984273 -46711481 + MIR SINE MIR 10 256 -6 27 0 0 0 chr15 38985870 38985897 -46709857 + AT_rich Low_complexity Low_complexity 1 27 0 1428 177 75 11 chr15 38986679 38986944 -46708810 - AluJo SINE Alu -20 292 11 216 0 0 0 chr15 38987268 38987292 -46708462 + (TA)n Simple_repeat Simple_repeat 1 24 0 1584 163 17 30 chr15 38987295 38987595 -46708159 - AluJo SINE Alu -16 296 1 1095 190 0 0 chr15 38987844 38988023 -46707731 + MER58A DNA MER1_type 45 223 -1 189 0 0 0 chr15 38988407 38988428 -46707326 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 2266 102 0 0 chr15 38989190 38989493 -46706261 + AluSg SINE Alu 1 303 -7 1763 148 24 14 chr15 38990086 38990383 -46705371 - AluJo SINE Alu -2 310 11 198 0 0 0 chr15 38992024 38992046 -46703708 + (A)n Simple_repeat Simple_repeat 1 22 0 1175 121 6 0 chr15 38992536 38992710 -46703044 + AluSg/x SINE Alu 128 302 -10 2651 237 59 52 chr15 38992721 38993322 -46702432 - L1M4 LINE L1 -2687 3459 2864 1457 148 89 44 chr15 38993322 38993592 -46702162 - AluJo SINE Alu -25 287 6 2651 237 59 52 chr15 38993592 38993622 -46702132 - L1M4 LINE L1 -3282 2864 2836 1104 186 14 0 chr15 38993622 38993842 -46701912 - L1PA14 LINE L1 0 6161 5939 2651 237 59 52 chr15 38993842 38994258 -46701496 - L1M4 LINE L1 -3310 2836 2403 239 343 0 0 chr15 38995405 38995475 -46700279 + MER5A DNA MER1_type 7 76 -113 798 172 0 0 chr15 38995476 38995604 -46700150 + FLAM_C SINE Alu 3 130 -3 1045 146 13 0 chr15 38995705 38995863 -46699891 - AluJo SINE Alu -152 160 1 352 305 79 45 chr15 38996098 38996275 -46699479 + L2 LINE L2 3108 3290 -23 1108 101 63 13 chr15 38996930 38997088 -46698666 - AluSg/x SINE Alu -13 297 132 2078 101 7 0 chr15 38997088 38997375 -46698379 - AluSp SINE Alu -7 306 18 357 361 81 47 chr15 38997453 38997774 -46697980 + L2 LINE L2 2939 3270 -2 279 79 0 0 chr15 38999276 38999314 -46696440 + (CA)n Simple_repeat Simple_repeat 2 39 0 507 206 37 136 chr15 39000976 39001219 -46694535 + MIR SINE MIR 4 222 -40 188 143 0 29 chr15 39001296 39001331 -46694423 - L2 LINE L2 -8 3264 3231 1262 179 84 34 chr15 39002687 39002984 -46692770 + AluJb SINE Alu 1 312 0 1616 181 0 17 chr15 39002986 39003284 -46692470 + AluJb SINE Alu 1 293 -19 328 305 21 0 chr15 39003294 39003389 -46692365 - L1MC4 LINE L1 -1339 6703 6607 300 125 25 100 chr15 39003407 39003487 -46692267 - L1MCa LINE L1 -4358 2068 1995 247 113 38 0 chr15 39003490 39003543 -46692211 + (TA)n Simple_repeat Simple_repeat 2 56 0 198 0 0 0 chr15 39005989 39006011 -46689743 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr15 39007745 39007780 -46687974 + AT_rich Low_complexity Low_complexity 1 35 0 1241 111 17 0 chr15 39008015 39008196 -46687558 - AluSg/x SINE Alu 0 312 129 2052 153 0 0 chr15 39008191 39008492 -46687262 - AluSx SINE Alu -11 301 1 267 236 87 42 chr15 39008494 39008690 -46687064 - L1ME LINE L1 -377 5785 5576 383 271 122 0 chr15 39010696 39010803 -46684951 + MLT1L LTR MaLR 150 269 -346 414 327 6 6 chr15 39011629 39011797 -46683957 + (TGG)n Simple_repeat Simple_repeat 1 168 0 2074 118 0 13 chr15 39014175 39014479 -46681275 + AluSx SINE Alu 1 300 -12 1787 182 0 0 chr15 39014765 39015051 -46680703 + AluJo SINE Alu 6 291 -21 452 293 78 10 chr15 39015852 39016057 -46679697 + MARNA DNA Mariner 167 385 -201 1579 161 82 4 chr15 39016264 39016531 -46679223 - AluSx SINE Alu -23 289 2 1926 155 3 0 chr15 39016933 39017224 -46678530 - AluSx SINE Alu -16 296 5 25 0 0 0 chr15 39017908 39017933 -46677821 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr15 39018076 39018111 -46677643 + (A)n Simple_repeat Simple_repeat 1 35 0 302 80 20 0 chr15 39019457 39019507 -46676247 + (CA)n Simple_repeat Simple_repeat 1 51 0 2443 68 0 16 chr15 39020844 39021153 -46674601 + AluSx SINE Alu 1 304 -8 234 125 0 0 chr15 39023580 39023620 -46672134 + MADE1 DNA Mariner 41 80 0 23 0 0 0 chr15 39024150 39024173 -46671581 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 39024287 39024309 -46671445 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 7 21 chr15 39027984 39028124 -46667630 + MIR3 SINE MIR 20 157 -51 1670 167 28 0 chr15 39028292 39028574 -46667180 + AluJo SINE Alu 1 290 -22 431 35 18 0 chr15 39028861 39028918 -46666836 + (TG)n Simple_repeat Simple_repeat 2 59 0 1964 131 0 0 chr15 39028923 39029198 -46666556 - AluSx SINE Alu -37 275 1 744 148 0 70 chr15 39029444 39029586 -46666168 - FLAM_C SINE Alu 0 133 2 1385 277 127 5 chr15 39030638 39031321 -46664433 - L2 LINE L2 -1 3312 2538 1857 157 0 26 chr15 39031854 39032160 -46663594 + AluJo SINE Alu 1 298 -14 2056 135 0 7 chr15 39032184 39032488 -46663266 + AluJb SINE Alu 1 302 -10 2195 103 3 7 chr15 39032537 39032838 -46662916 + AluSg1 SINE Alu 1 300 -9 219 380 43 0 chr15 39032841 39032933 -46662821 + L2 LINE L2 3208 3303 -10 2178 103 0 32 chr15 39033173 39033484 -46662270 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 39033484 39033506 -46662248 + AT_rich Low_complexity Low_complexity 1 22 0 1419 183 0 56 chr15 39033747 39034031 -46661723 - AluJo SINE Alu -15 297 30 357 139 0 0 chr15 39034125 39034187 -46661567 - AluSc SINE Alu -83 216 169 695 87 19 0 chr15 39034187 39034291 -46661463 + AluSg/x SINE Alu 205 310 0 1217 119 0 0 chr15 39034488 39034648 -46661106 - AluSg SINE Alu -150 160 1 1750 159 37 3 chr15 39035542 39035838 -46659916 - AluJb SINE Alu -6 306 1 1595 163 12 66 chr15 39036392 39036711 -46659043 - AluJo SINE Alu -10 302 1 982 188 133 9 chr15 39036864 39037082 -46658672 - AluJo SINE Alu -21 291 47 323 226 145 54 chr15 39037957 39038136 -46657618 - MIR SINE MIR 0 262 64 2279 102 0 0 chr15 39038136 39038431 -46657323 + AluY SINE Alu 3 297 -14 281 292 155 19 chr15 39038670 39038831 -46656923 + MIR SINE MIR 49 231 -31 259 336 111 63 chr15 39039352 39039685 -46656069 + L2 LINE L2 2872 3220 -52 199 302 0 0 chr15 39039922 39039965 -46655789 - MIR SINE MIR -105 103 61 1521 180 20 16 chr15 39040689 39040994 -46654760 + AluJb SINE Alu 1 306 -6 2344 88 3 7 chr15 39043412 39043720 -46652034 + AluSq SINE Alu 1 307 -6 184 226 0 0 chr15 39043721 39043752 -46652002 - L2 LINE L2 -32 3240 3210 184 200 0 0 chr15 39043727 39043757 -46651997 - MIR SINE MIR -32 230 201 1915 143 33 27 chr15 39044419 39044754 -46651000 + MER2 DNA MER2_type 1 337 -8 367 100 0 0 chr15 39044754 39044804 -46650950 - AluJ/FLAM SINE Alu -229 73 24 1667 154 27 27 chr15 39044855 39045148 -46650606 - AluJo SINE Alu -19 293 1 2290 98 0 0 chr15 39045667 39045962 -46649792 + AluSq SINE Alu 1 295 -18 474 248 177 30 chr15 39045993 39046191 -46649563 + MIR SINE MIR 36 262 0 368 253 55 0 chr15 39046492 39046583 -46649171 + MIR SINE MIR 89 184 -78 465 274 44 0 chr15 39047460 39047595 -46648159 + L1MB5 LINE L1 6001 6141 -33 21 82 0 0 chr15 39048048 39048097 -46647657 + AT_rich Low_complexity Low_complexity 1 49 0 819 132 0 0 chr15 39048182 39048296 -46647458 + AluSq/x SINE Alu 1 114 -198 2184 114 13 0 chr15 39048836 39049134 -46646620 - AluSx SINE Alu -10 302 1 294 301 150 9 chr15 39049160 39049273 -46646481 - L3 LINE CR1 -2 1575 1447 1642 204 10 3 chr15 39049300 39049608 -46646146 - AluJo SINE Alu -2 310 1 511 266 16 33 chr15 39049768 39049952 -46645802 - L3 LINE CR1 -685 892 712 292 300 117 8 chr15 39050029 39050149 -46645605 - L3 LINE CR1 -1097 480 348 7684 199 46 47 chr15 39050528 39051701 -46644053 - L1MB5 LINE L1 0 6174 5002 1706 175 7 7 chr15 39051701 39051987 -46643767 + AluJo SINE Alu 1 286 -26 7684 199 46 47 chr15 39051987 39052834 -46642920 - L1MB5 LINE L1 -1172 5002 4156 2163 111 0 26 chr15 39052834 39053140 -46642614 - AluSg SINE Alu -12 298 1 7684 199 46 47 chr15 39053140 39053156 -46642598 - L1MB5 LINE L1 -2018 4156 4141 1446 121 31 0 chr15 39053156 39053379 -46642375 - MER30 DNA MER1_type 0 230 1 7684 199 46 47 chr15 39053379 39053600 -46642154 - L1MB5 LINE L1 -2033 4141 3921 1819 158 21 0 chr15 39053600 39053891 -46641863 - AluSx SINE Alu -15 297 1 7684 199 46 47 chr15 39053891 39054277 -46641477 - L1MB5 LINE L1 -2253 3921 3536 1704 189 7 0 chr15 39054277 39054573 -46641181 - AluJb SINE Alu -14 298 1 7684 199 46 47 chr15 39054573 39054882 -46640872 - L1MB5 LINE L1 -2638 3536 3223 1651 181 20 3 chr15 39054882 39055175 -46640579 - AluJb SINE Alu -4 308 11 7684 199 46 47 chr15 39055175 39055463 -46640291 - L1MB5 LINE L1 -2951 3223 2936 22 0 0 0 chr15 39055706 39055728 -46640026 + AT_rich Low_complexity Low_complexity 1 22 0 650 189 24 65 chr15 39056463 39056632 -46639122 + MER58A DNA MER1_type 45 206 -18 260 313 239 17 chr15 39056903 39057079 -46638675 + MIR SINE MIR 20 234 -28 375 215 47 9 chr15 39057543 39057650 -46638104 + L1MC4 LINE L1 7932 8042 0 21 36 0 0 chr15 39058467 39058495 -46637259 + AT_rich Low_complexity Low_complexity 1 28 0 593 225 62 0 chr15 39059402 39059531 -46636223 + FLAM_A SINE Alu 2 138 -4 2592 55 0 0 chr15 39059676 39059983 -46635771 + AluY SINE Alu 1 307 -4 1753 109 3 136 chr15 39061252 39061582 -46634172 - AluSg SINE Alu -22 288 3 309 209 12 23 chr15 39062488 39062574 -46633180 - L1MC5 LINE L1 -45 7916 7832 1117 158 62 10 chr15 39062864 39063107 -46632647 + AluJb SINE Alu 86 312 0 270 0 0 0 chr15 39063151 39063181 -46632573 + (TC)n Simple_repeat Simple_repeat 2 31 0 2152 125 0 3 chr15 39063221 39063524 -46632230 + AluSq SINE Alu 3 304 -9 217 218 0 55 chr15 39063680 39063735 -46632019 - L2 LINE L2 -8 3264 3213 383 304 0 0 chr15 39064125 39064217 -46631537 + MIR SINE MIR 66 157 -105 215 371 10 10 chr15 39064443 39064540 -46631214 + L2 LINE L2 1188 1284 -2030 1008 167 6 0 chr15 39064578 39064734 -46631020 - FRAM SINE Alu -16 160 4 375 341 37 47 chr15 39064734 39065030 -46630724 - L3 LINE CR1 -33 1544 1252 248 278 62 72 chr15 39065087 39065184 -46630570 - L3 LINE CR1 -517 1060 965 1296 171 8 61 chr15 39065419 39065683 -46630071 - AluJo SINE Alu -19 293 44 417 214 16 40 chr15 39065684 39065810 -46629944 - L1M4 LINE L1 -866 5280 5158 287 134 0 104 chr15 39065814 39065881 -46629873 - FLAM SINE Alu -16 117 75 1799 259 71 8 chr15 39065925 39066569 -46629185 - L1M4 LINE L1 -1666 4480 3796 518 282 5 35 chr15 39066572 39066782 -46628972 - L1M4 LINE L1 -2481 3665 3465 325 73 0 0 chr15 39066784 39066825 -46628929 + Alu SINE Alu 1 41 -258 224 171 0 0 chr15 39066968 39067003 -46628751 - MIR SINE MIR -137 71 37 504 116 186 0 chr15 39067013 39067099 -46628655 + AluJb SINE Alu 195 296 -16 232 295 246 6 chr15 39067202 39067378 -46628376 + MIR SINE MIR 38 254 -8 255 158 237 26 chr15 39067714 39067790 -46627964 - Charlie1 DNA MER1_type 0 2761 2670 24 0 0 0 chr15 39067801 39067825 -46627929 + AT_rich Low_complexity Low_complexity 1 24 0 228 286 26 13 chr15 39067906 39067983 -46627771 - MIR3 SINE MIR -119 89 12 183 296 0 19 chr15 39067978 39068032 -46627722 - L2 LINE L2 -10 3262 3210 * 2172 94 0 11 chr15 39068304 39068613 -46627141 - AluSx SINE Alu 0 306 1 461 203 42 157 chr15 39069090 39069210 -46626544 + MER63A DNA MER1_type 2 83 -1605 646 256 0 0 chr15 39069210 39069343 -46626411 - FLAM_A SINE Alu 0 133 1 461 203 42 157 chr15 39069343 39069458 -46626296 + MER63A DNA MER1_type 83 210 0 218 152 0 22 chr15 39069750 39069796 -46625958 + CT-rich Low_complexity Low_complexity 1 45 0 1880 177 7 0 chr15 39069796 39070095 -46625659 - AluJo SINE Alu -11 301 1 1094 175 57 0 chr15 39071157 39071351 -46624403 + AluJo SINE Alu 1 205 -107 2244 101 0 0 chr15 39071538 39071834 -46623920 + AluY SINE Alu 1 296 -15 269 256 184 56 chr15 39072078 39072206 -46623548 - L1ME LINE L1 -301 5820 5710 294 73 0 0 chr15 39072206 39072247 -46623507 + (CA)n Simple_repeat Simple_repeat 2 42 0 269 256 184 56 chr15 39072247 39072384 -46623370 - L1ME LINE L1 -411 5710 5521 2160 121 3 0 chr15 39072397 39072702 -46623052 + AluSx SINE Alu 5 310 -2 2823 77 11 11 chr15 39072724 39073099 -46622655 + THE1C LTR MaLR 1 375 0 1076 173 10 43 chr15 39073255 39073463 -46622291 + LTR48B LTR ERV1 3 203 -441 1535 197 14 24 chr15 39073659 39073949 -46621805 - AluJo SINE Alu -18 294 8 2248 107 0 0 chr15 39074178 39074476 -46621278 - AluSg SINE Alu -8 302 5 869 198 63 38 chr15 39075537 39075774 -46619980 - Charlie4 DNA MER1_type -1716 245 3 1803 162 26 16 chr15 39076384 39076693 -46619061 + AluJo SINE Alu 1 312 0 2555 92 31 3 chr15 39076872 39077232 -46618522 + THE1C LTR MaLR 1 370 -5 1795 157 37 3 chr15 39078895 39079189 -46616565 + AluJb SINE Alu 1 304 -8 2165 125 0 10 chr15 39079511 39079823 -46615931 + AluSx SINE Alu 1 309 -3 369 255 43 106 chr15 39080928 39081089 -46614665 + MIR3 SINE MIR 25 175 -33 1436 155 68 22 chr15 39081583 39081861 -46613893 - AluJo SINE Alu -11 291 1 222 156 0 0 chr15 39082144 39082189 -46613565 + GA-rich Low_complexity Low_complexity 4 48 0 692 264 145 4 chr15 39082228 39082455 -46613299 + MIR SINE MIR 4 262 0 1598 247 129 57 chr15 39083258 39083348 -46612406 - L1MCc LINE L1 -4146 2976 2894 1378 168 118 11 chr15 39083348 39083628 -46612126 - AluJo SINE Alu -2 310 1 1598 247 129 57 chr15 39083628 39083925 -46611829 - L1MCc LINE L1 -4228 2894 2620 1168 193 52 0 chr15 39083925 39084138 -46611616 + MER58A DNA MER1_type 1 224 0 1598 247 129 57 chr15 39084138 39085547 -46610207 - L1MCc LINE L1 -4502 2620 853 2159 94 7 27 chr15 39085590 39085888 -46609866 - AluSc SINE Alu -17 292 1 1946 221 82 126 chr15 39085939 39086092 -46609662 - L1MEc LINE L1 -5231 1165 1007 1493 197 17 20 chr15 39086092 39086392 -46609362 + AluJo SINE Alu 1 299 -13 1946 221 82 126 chr15 39086392 39086425 -46609329 - L1MEc LINE L1 -5389 1007 974 624 27 0 0 chr15 39086425 39086499 -46609255 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 1946 221 82 126 chr15 39086499 39087394 -46608360 - L1MEc LINE L1 -5422 974 130 1523 169 43 22 chr15 39088495 39088773 -46606981 - AluJb SINE Alu -28 284 1 640 169 153 0 chr15 39088946 39089070 -46606684 - AluJo SINE Alu -16 296 154 270 233 50 0 chr15 39089082 39089142 -46606612 + L2 LINE L2 3021 3083 -230 180 0 0 0 chr15 39089146 39089166 -46606588 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 401 80 0 0 chr15 39089200 39089250 -46606504 + AluJ/FLAM SINE Alu 12 61 -251 443 152 0 0 chr15 39089352 39089418 -46606336 - AluSq/x SINE Alu -203 109 44 287 241 153 53 chr15 39089419 39089589 -46606165 - L1ME LINE L1 -294 5827 5641 308 203 14 54 chr15 39089713 39089787 -46605967 - AluJo SINE Alu -128 174 104 2215 120 0 0 chr15 39090569 39090868 -46604886 - AluSx SINE Alu -13 299 1 303 274 20 20 chr15 39091143 39091245 -46604509 + MER58 DNA MER1_type 2318 2419 -1 218 286 36 0 chr15 39091553 39091609 -46604145 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1743 171 9 22 chr15 39091674 39091989 -46603765 + AluJo SINE Alu 1 311 -1 23 0 0 0 chr15 39092331 39092354 -46603400 + AT_rich Low_complexity Low_complexity 1 23 0 769 180 0 0 chr15 39092632 39092760 -46602994 + FLAM_C SINE Alu 12 139 -4 47 53 0 0 chr15 39093678 39093753 -46602001 + AT_rich Low_complexity Low_complexity 1 75 0 548 277 14 7 chr15 39094324 39094472 -46601282 + MLT1K LTR MaLR 434 582 -6 1999 122 0 80 chr15 39094971 39095308 -46600446 - AluSx SINE Alu -2 310 1 1634 156 52 3 chr15 39095630 39095918 -46599836 - AluJb SINE Alu -4 308 7 1688 143 85 37 chr15 39096389 39096717 -46599037 - MER2 DNA MER2_type 0 344 1 408 340 0 21 chr15 39097135 39097276 -46598478 + MIR3 SINE MIR 5 142 -66 1334 184 121 18 chr15 39098994 39099266 -46596488 + AluJo SINE Alu 1 300 -12 307 154 0 0 chr15 39101802 39101854 -46593900 + Alu SINE Alu 246 297 -4 292 333 183 0 chr15 39103717 39103870 -46591884 + MER5A DNA MER1_type 9 189 0 334 309 35 82 chr15 39104271 39104483 -46591271 - MIR SINE MIR -44 164 2 1645 203 0 10 chr15 39104836 39105141 -46590613 + AluJb SINE Alu 2 303 -9 341 191 0 3 chr15 39105658 39105732 -46590022 + MER34C LTR ERV1 1 101 -469 371 254 52 10 chr15 39105933 39106099 -46589655 + MER34B LTR ERV1 337 492 -73 610 201 141 37 chr15 39106338 39106584 -46589170 - L1MC4 LINE L1 -116 7879 7660 1200 132 44 18 chr15 39106584 39106812 -46588942 - L1MA3 LINE L1 -14 6291 6058 610 201 141 37 chr15 39106812 39107315 -46588439 - L1MC4 LINE L1 -335 7660 6871 641 256 85 16 chr15 39107316 39107401 -46588353 - L1MD3 LINE L1 -1294 6701 6623 279 0 0 0 chr15 39107401 39107432 -46588322 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 641 256 85 16 chr15 39107432 39107592 -46588162 - L1MD3 LINE L1 -1372 6623 6439 2173 99 3 0 chr15 39108090 39108372 -46587382 + AluSp SINE Alu 3 285 -28 389 346 160 19 chr15 39108460 39108836 -46586918 + L3 LINE CR1 1063 1491 -86 283 310 150 9 chr15 39108890 39109103 -46586651 + MIR SINE MIR 6 248 -14 398 308 9 0 chr15 39109178 39109285 -46586469 + L2 LINE L2 3201 3308 -5 2211 144 20 38 chr15 39109351 39109748 -46586006 - L1MB2 LINE L1 -210 5961 5572 265 260 29 39 chr15 39109801 39109905 -46585849 + L1ME4a LINE L1 5984 6086 -35 2260 109 0 7 chr15 39111686 39111990 -46583764 - AluSg SINE Alu -8 302 1 2328 74 0 10 chr15 39112455 39112751 -46583003 + AluY SINE Alu 1 293 -18 983 234 102 0 chr15 39112796 39113052 -46582702 + AluJb SINE Alu 13 294 -18 861 208 6 0 chr15 39117570 39117729 -46578025 - FRAM SINE Alu -6 160 1 189 388 39 0 chr15 39117863 39117966 -46577788 + MIR SINE MIR 38 144 -64 593 297 59 42 chr15 39118744 39118980 -46576774 + MIR SINE MIR 1 240 -22 24 0 0 0 chr15 39118993 39119017 -46576737 + AT_rich Low_complexity Low_complexity 1 24 0 264 283 26 97 chr15 39119848 39119961 -46575793 + MIR SINE MIR 45 149 -59 220 350 49 28 chr15 39119975 39120118 -46575636 - MIR SINE MIR -6 256 111 4093 155 51 25 chr15 39120119 39120178 -46575576 + L1MB7 LINE L1 5346 5402 -782 1603 173 36 7 chr15 39120178 39120455 -46575299 - AluJb SINE Alu -27 285 1 4093 155 51 25 chr15 39120455 39121212 -46574542 + L1MB7 LINE L1 5402 6184 0 208 372 0 0 chr15 39122345 39122423 -46573331 + L2 LINE L2 3236 3313 0 2049 142 3 10 chr15 39122450 39122761 -46572993 + AluSx SINE Alu 1 309 -3 1678 172 7 40 chr15 39123606 39123908 -46571846 - AluSx SINE Alu -18 294 3 2221 80 30 13 chr15 39124887 39125186 -46570568 + AluY SINE Alu 1 304 -7 270 288 126 35 chr15 39125693 39125746 -46570008 + MER113 DNA MER1_type? 262 309 -212 1246 174 119 82 chr15 39125746 39125876 -46569878 + AluJb SINE Alu 3 127 -185 2206 61 3 61 chr15 39125876 39126189 -46569565 - AluY SINE Alu -16 295 1 1246 174 119 82 chr15 39126189 39126351 -46569403 + AluJb SINE Alu 127 306 -6 270 288 126 35 chr15 39126351 39126495 -46569259 + MER113 DNA MER1_type? 309 477 -44 310 300 163 56 chr15 39127230 39127463 -46568291 + MIR SINE MIR 3 260 -2 646 269 54 88 chr15 39128049 39128492 -46567262 - MLT1A1 LTR MaLR 0 365 1 802 218 13 0 chr15 39128853 39129009 -46566745 - AluJb SINE Alu -3 309 152 186 394 11 43 chr15 39129233 39129327 -46566427 - L2 LINE L2 -67 3205 3115 320 341 118 53 chr15 39129412 39129658 -46566096 - L2 LINE L2 -9 3263 3002 212 405 17 9 chr15 39129637 39129753 -46566001 + L2 LINE L2 3151 3267 -5 * 1477 180 6 68 chr15 39130408 39130552 -46565202 + AluSx SINE Alu 3 118 -194 261 75 0 0 chr15 39130552 39130592 -46565162 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1477 180 6 68 chr15 39130592 39130769 -46564985 + AluSx SINE Alu 118 304 -8 342 284 65 32 chr15 39132172 39132327 -46563427 - MIR SINE MIR -20 242 83 747 190 87 49 chr15 39132526 39132710 -46563044 + AluJo SINE Alu 1 191 -121 1707 153 33 4 chr15 39133213 39133511 -46562243 + AluJb SINE Alu 2 307 0 425 324 97 5 chr15 39133644 39133860 -46561894 + MIR SINE MIR 2 237 -25 21 0 0 0 chr15 39134160 39134181 -46561573 + AT_rich Low_complexity Low_complexity 1 21 0 226 293 13 53 chr15 39134979 39135054 -46560700 - L2 LINE L2 0 3272 3201 1584 192 0 24 chr15 39135265 39135556 -46560198 + AluJo SINE Alu 5 288 -24 1611 165 0 54 chr15 39135886 39136202 -46559552 - AluJo SINE Alu -13 299 1 183 184 0 0 chr15 39136297 39136335 -46559419 + A-rich Low_complexity Low_complexity 1 38 0 257 338 46 53 chr15 39136348 39136499 -46559255 - L2 LINE L2 -7 3265 3116 263 271 0 43 chr15 39137089 39137159 -46558595 + L2 LINE L2 3186 3252 -20 1890 176 0 3 chr15 39137966 39138278 -46557476 + AluJb SINE Alu 1 311 -1 1502 168 9 75 chr15 39141934 39142255 -46553499 - AluJo SINE Alu -12 300 1 4793 163 35 28 chr15 39142256 39143248 -46552506 - L1MC1 LINE L1 -155 6178 5186 1382 159 31 0 chr15 39143427 39143685 -46552069 - L1MD3 LINE L1 0 7995 7730 312 256 112 24 chr15 39143718 39143843 -46551911 - L1MC4a LINE L1 -1910 5898 5763 227 292 180 0 chr15 39144017 39144106 -46551648 - MIR SINE MIR -74 188 84 1904 138 10 14 chr15 39144147 39144436 -46551318 + AluSx SINE Alu 1 288 -24 2096 128 3 16 chr15 39144685 39144998 -46550756 + AluSx SINE Alu 1 309 -3 2054 134 20 0 chr15 39145124 39145430 -46550324 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 39195872 39195896 -46499858 + (A)n Simple_repeat Simple_repeat 1 24 0 302 291 113 48 chr15 39196957 39197187 -46498567 + MLT1L LTR MaLR 161 405 -210 491 283 83 45 chr15 39197336 39197574 -46498180 + MIR SINE MIR 17 259 -3 23 0 0 0 chr15 39197666 39197689 -46498065 + AT_rich Low_complexity Low_complexity 1 23 0 1514 23 0 0 chr15 39198018 39198194 -46497560 + L1PA5 LINE L1 5978 6153 -1 309 26 0 0 chr15 39198264 39198302 -46497452 + (CA)n Simple_repeat Simple_repeat 1 38 0 2394 158 11 21 chr15 39198540 39199008 -46496746 - L1MB8 LINE L1 0 6178 5716 222 116 0 0 chr15 39200359 39200402 -46495352 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1989 133 48 0 chr15 39200406 39200699 -46495055 - AluSx SINE Alu -5 307 1 819 158 0 8 chr15 39200753 39200886 -46494868 - FLAM_A SINE Alu -1 132 1 363 183 48 0 chr15 39201900 39202026 -46493728 + (TA)n Simple_repeat Simple_repeat 2 133 0 1961 152 5 76 chr15 39202198 39202246 -46493508 + L1MB3 LINE L1 5782 5832 -351 2540 39 0 7 chr15 39202246 39202553 -46493201 + AluY SINE Alu 1 305 -6 1961 152 5 76 chr15 39202553 39202924 -46492830 + L1MB3 LINE L1 5832 6171 -12 1116 143 0 0 chr15 39202973 39203134 -46492620 + FRAM SINE Alu 1 159 -17 930 268 113 35 chr15 39203271 39203757 -46491997 + HAL1b LINE L1 61 584 -764 454 216 68 27 chr15 39203823 39203971 -46491783 + L1MC/D LINE L1 5282 5435 -2373 268 152 22 0 chr15 39203971 39204017 -46491737 + Alu SINE Alu 1 47 -254 21 0 0 0 chr15 39204122 39204143 -46491611 + AT_rich Low_complexity Low_complexity 1 21 0 2230 108 3 0 chr15 39204191 39204488 -46491266 - AluSx SINE Alu -12 300 3 21 36 0 0 chr15 39207171 39207199 -46488555 + AT_rich Low_complexity Low_complexity 1 28 0 555 371 37 48 chr15 39207246 39207266 -46488488 - L2 LINE L2 -2 3270 3251 1411 171 93 25 chr15 39207266 39207588 -46488166 - MER2 DNA MER2_type 0 344 1 555 371 37 48 chr15 39207588 39208125 -46487629 - L2 LINE L2 -21 3251 2713 965 296 181 18 chr15 39208224 39208727 -46487027 - MLT1K LTR MaLR -2 586 2 280 294 0 81 chr15 39208764 39208900 -46486854 + L3 LINE CR1 1187 1311 -266 30 45 0 0 chr15 39209008 39209052 -46486702 + AT_rich Low_complexity Low_complexity 1 44 0 374 263 34 17 chr15 39209087 39209205 -46486549 - MIR SINE MIR -58 204 85 23 0 0 0 chr15 39209365 39209388 -46486366 + AT_rich Low_complexity Low_complexity 1 23 0 7538 31 0 9 chr15 39209388 39210358 -46485396 - L1PA4 LINE L1 -3 6152 5185 832 229 93 0 chr15 39211259 39211464 -46484290 + MER58A DNA MER1_type 1 224 0 2030 74 4 4 chr15 39213224 39213494 -46482260 + L1PA6 LINE L1 5880 6149 -5 1010 227 37 41 chr15 39213589 39213884 -46481870 + MER65-int LTR ERV1 379 672 -4199 3550 169 33 0 chr15 39214007 39215702 -46480052 + L1PBa LINE L1 105 2021 -4842 1858 161 30 3 chr15 39216925 39217229 -46478525 - AluJo SINE Alu 0 312 1 223 300 14 0 chr15 39217357 39217427 -46478327 + (TA)n Simple_repeat Simple_repeat 2 72 0 2290 93 0 10 chr15 39217927 39218229 -46477525 - AluSg SINE Alu -11 299 1 531 79 0 0 chr15 39218480 39218556 -46477198 - HY3 scRNA scRNA -1 100 25 942 131 15 45 chr15 39218738 39218885 -46476869 + MER65A LTR ERV1 253 394 -51 2422 63 3 13 chr15 39218885 39219186 -46476568 - AluY SINE Alu -13 298 1 942 131 15 45 chr15 39219186 39219237 -46476517 + MER65A LTR ERV1 394 445 0 2263 238 71 65 chr15 39219237 39220015 -46475739 - L1 LINE L1 -3844 2366 1594 1931 139 3 14 chr15 39220015 39220309 -46475445 - AluSx SINE Alu -17 295 5 2263 238 71 65 chr15 39220309 39220667 -46475087 - L1 LINE L1 -4616 1594 1240 1490 193 34 34 chr15 39220667 39220963 -46474791 - AluJb SINE Alu -16 296 1 2263 238 71 65 chr15 39220963 39221127 -46474627 - L1 LINE L1 -4970 1240 1079 317 151 0 0 chr15 39221127 39221180 -46474574 + MER87 LTR ERV1 91 143 -398 2263 238 71 65 chr15 39221180 39222207 -46473547 - L1 LINE L1 -5131 1079 4 832 180 31 36 chr15 39222234 39222456 -46473298 - L1M3 LINE L1 -385 5786 5566 1808 224 82 48 chr15 39222607 39223274 -46472480 + LTR8 LTR ERV1 16 691 0 1413 161 30 13 chr15 39223274 39223724 -46472030 - L1M3 LINE L1 -628 5555 5099 340 253 0 0 chr15 39223731 39223814 -46471940 + L1M4 LINE L1 4851 4933 -1213 407 223 58 0 chr15 39223954 39224057 -46471697 + L1M1 LINE L1 21 129 -7436 13125 173 157 17 chr15 39224061 39225271 -46470483 + L1M1 LINE L1 12 1051 -6514 2328 139 111 5 chr15 39225271 39225658 -46470096 - MSTA LTR MaLR 0 428 1 13125 173 157 17 chr15 39225658 39228877 -46466877 + L1M1 LINE L1 1051 5074 -2491 12509 208 19 6 chr15 39229036 39232703 -46463051 + L1PB1 LINE L1 1342 5035 -1111 2116 44 0 4 chr15 39232706 39232981 -46462773 - L1PA4 LINE L1 -48 6107 5834 3433 123 20 5 chr15 39232996 39233699 -46462055 + L1PB1 LINE L1 5078 5791 -360 492 165 0 0 chr15 39233753 39233844 -46461910 + L1PB1 LINE L1 5782 5872 -279 624 13 0 0 chr15 39233844 39233923 -46461831 - L1PA2 LINE L1 0 6155 6077 21 0 0 0 chr15 39234101 39234122 -46461632 + AT_rich Low_complexity Low_complexity 1 21 0 693 228 0 0 chr15 39234123 39234259 -46461495 - FAM SINE Alu -19 166 31 377 225 196 8 chr15 39234261 39234527 -46461227 - L1MEc LINE L1 -4619 1637 1263 2956 231 109 21 chr15 39234536 39234772 -46460982 - L1MEc LINE L1 -5169 1227 1013 1724 169 0 53 chr15 39234772 39235092 -46460662 - AluJb SINE Alu -9 303 1 2956 231 109 21 chr15 39235092 39235951 -46459803 - L1MEc LINE L1 -5383 1013 36 301 256 67 11 chr15 39236129 39236219 -46459535 + MLT1I LTR MaLR 313 407 -2 426 200 33 0 chr15 39237476 39237566 -46458188 + MER99 DNA DNA 2 94 -734 21 0 0 0 chr15 39237955 39237976 -46457778 + AT_rich Low_complexity Low_complexity 1 21 0 2860 193 22 3 chr15 39238199 39238786 -46456968 + MER99 DNA DNA 230 827 -1 2271 68 17 3 chr15 39238822 39239116 -46456638 + AluY SINE Alu 3 300 -11 2156 111 0 36 chr15 39239332 39239638 -46456116 + AluSx SINE Alu 1 295 -17 530 310 77 17 chr15 39239890 39240190 -46455564 - MLT1I LTR MaLR 0 409 92 23 0 0 0 chr15 39240233 39240256 -46455498 + AT_rich Low_complexity Low_complexity 1 23 0 2436 94 0 3 chr15 39240441 39240748 -46455006 + AluSq SINE Alu 1 306 -7 1839 131 28 3 chr15 39240748 39241031 -46454723 + AluSx SINE Alu 1 290 -22 658 204 74 0 chr15 39241220 39241382 -46454372 - MER58A DNA MER1_type -8 216 43 2234 102 10 3 chr15 39241447 39241741 -46454013 + AluSq SINE Alu 1 296 -17 2250 101 3 3 chr15 39241790 39242086 -46453668 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr15 39242405 39242427 -46453327 + AT_rich Low_complexity Low_complexity 1 22 0 3049 132 133 16 chr15 39242679 39243147 -46452607 - Tigger3(Golem) DNA MER2_type -1 3027 2456 1747 174 0 17 chr15 39243147 39243435 -46452319 - AluJb SINE Alu -29 283 1 3049 132 133 16 chr15 39243435 39243635 -46452119 - Tigger3(Golem) DNA MER2_type -572 2456 2281 489 151 161 0 chr15 39243632 39243725 -46452029 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 263 276 32 32 chr15 39243987 39244110 -46451644 + L3 LINE CR1 1295 1417 -160 1754 171 44 83 chr15 39245321 39245755 -46449999 + MSTB1 LTR MaLR 1 417 -15 14384 122 20 35 chr15 39245856 39247151 -46448603 - Tigger1 DNA MER2_type 0 2418 1176 1831 149 0 28 chr15 39247151 39247440 -46448314 - AluSx SINE Alu -30 282 2 14384 122 20 35 chr15 39247440 39248598 -46447156 - Tigger1 DNA MER2_type -1242 1176 2 558 147 112 130 chr15 39248643 39248717 -46447037 + L1MB5 LINE L1 5705 5779 -395 5919 23 0 0 chr15 39248717 39249400 -46446354 + L1PA3 LINE L1 5461 6143 -12 558 147 112 130 chr15 39249400 39249724 -46446030 + L1MB5 LINE L1 5779 6174 0 2562 164 10 2 chr15 39249969 39250383 -46445371 - MER47B DNA MER2_type -1 417 1 204 299 46 46 chr15 39250792 39250879 -46444875 + MIR SINE MIR 110 196 -66 8111 102 99 30 chr15 39251766 39253043 -46442711 - SVA Other Other -20 1366 2 234 91 0 0 chr15 39253058 39253091 -46442663 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 259 268 98 41 chr15 39254024 39254147 -46441607 - MIR SINE MIR -71 191 62 239 394 86 27 chr15 39255536 39255818 -46439936 - L2 LINE L2 0 3272 2957 1788 178 0 32 chr15 39255818 39256133 -46439621 - AluJb SINE Alu -7 305 1 239 394 86 27 chr15 39256133 39256256 -46439498 - L2 LINE L2 -315 2957 2843 4955 111 83 9 chr15 39257217 39258094 -46437660 - Tigger3b DNA MER2_type 0 1231 290 7625 19 1 1 chr15 39258195 39259742 -46436012 - L1PA3 LINE L1 -151 6004 4458 2133 74 0 7 chr15 39259747 39260043 -46435711 + L1PB1 LINE L1 5858 6151 0 386 234 8 68 chr15 39260071 39260096 -46435658 + MER65B-int LTR ERV1 702 727 -4295 283 254 18 88 chr15 39260096 39260210 -46435544 + LTR57-int LTR ERVL 302 407 -4936 386 234 8 68 chr15 39260210 39260240 -46435514 + MER65B-int LTR ERV1 727 967 -4055 6396 214 67 66 chr15 39260267 39262311 -46433443 + MER65B-int LTR ERV1 867 2908 -1963 2249 71 0 0 chr15 39262311 39262626 -46433128 + AluY SINE Alu 1 315 0 6396 214 67 66 chr15 39262626 39262738 -46433016 + MER65B-int LTR ERV1 2908 3018 -1853 316 153 0 0 chr15 39262738 39262797 -46432957 + L1MA2 LINE L1 6242 6300 -4 6396 214 67 66 chr15 39262797 39262996 -46432758 + MER65B-int LTR ERV1 3018 3215 -1656 2105 112 0 26 chr15 39262996 39263308 -46432446 + AluSp SINE Alu 1 304 -9 6396 214 67 66 chr15 39263308 39266484 -46429270 + MER65B-int LTR ERV1 3215 4869 -2 1716 190 3 7 chr15 39266484 39266774 -46428980 + AluJo SINE Alu 3 291 -21 282 143 0 0 chr15 39266800 39266849 -46428905 + MER65B LTR ERV1 5 53 -478 1637 101 13 8 chr15 39266853 39267090 -46428664 + AluSq SINE Alu 5 242 -71 32 0 0 0 chr15 39268216 39268248 -46427506 + AT_rich Low_complexity Low_complexity 1 32 0 271 274 265 20 chr15 39268678 39268882 -46426872 - MIR SINE MIR -2 260 7 355 300 61 76 chr15 39268909 39269172 -46426582 + HAL1 LINE L1 16 274 -2233 2179 117 7 0 chr15 39269332 39269630 -46426124 - AluSx SINE Alu -12 300 1 949 128 0 0 chr15 39269633 39269766 -46425988 - AluSq/x SINE Alu -179 133 1 354 389 75 13 chr15 39269766 39270005 -46425749 + HAL1 LINE L1 443 696 -1811 1697 164 3 39 chr15 39270016 39270327 -46425427 - AluJo SINE Alu -12 300 1 2475 198 116 21 chr15 39270556 39271626 -46424128 + Charlie1 DNA MER1_type 1444 2668 -93 263 297 0 0 chr15 39271649 39271713 -46424041 - MER91B DNA MER1_type -126 64 1 1593 267 106 72 chr15 39271714 39273009 -46422745 + HAL1 LINE L1 775 2113 -394 328 130 0 0 chr15 39273048 39273094 -46422660 - MER96B DNA MER1_type? -182 235 190 719 182 8 0 chr15 39273137 39273269 -46422485 - FLAM_C SINE Alu 0 133 1 371 282 66 17 chr15 39274642 39274823 -46420931 + L1MEc LINE L1 1748 1937 -4459 * 505 231 48 82 chr15 39274816 39275084 -46420670 + L1MEc LINE L1 3328 3586 -2629 21 36 0 0 chr15 39276422 39276450 -46419304 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 39277855 39277877 -46417877 + AT_rich Low_complexity Low_complexity 1 22 0 2353 87 0 3 chr15 39278393 39278693 -46417061 - AluSq SINE Alu -14 299 1 1638 187 99 59 chr15 39279002 39279495 -46416259 + Looper DNA T2_type 3 515 -1043 753 271 75 59 chr15 39279496 39279880 -46415874 - MER34 LTR ERV1 0 542 147 2121 99 38 0 chr15 39279880 39280173 -46415581 + AluSq SINE Alu 1 304 -9 753 271 75 59 chr15 39280173 39280297 -46415457 - MER34 LTR ERV1 -395 147 26 4059 167 40 36 chr15 39280307 39280727 -46415027 + Looper DNA T2_type 513 930 -628 1867 123 42 7 chr15 39280727 39281012 -46414742 - AluJo SINE Alu -17 295 1 4059 167 40 36 chr15 39281012 39281377 -46414377 + Looper DNA T2_type 930 1305 -253 2165 124 42 17 chr15 39281377 39281733 -46414021 + MER47A DNA MER2_type 1 365 -1 4059 167 40 36 chr15 39281733 39281816 -46413938 + Looper DNA T2_type 1305 1386 -172 601 182 67 24 chr15 39282666 39282831 -46412923 + Looper DNA T2_type 1387 1558 0 395 208 0 14 chr15 39283161 39283233 -46412521 - Tigger3b DNA MER2_type -1160 71 1 258 239 83 94 chr15 39285477 39285526 -46410228 + MLT1L LTR MaLR 3 51 -460 1056 229 47 0 chr15 39285526 39285740 -46410014 + MER58A DNA MER1_type 1 224 0 258 239 83 94 chr15 39285740 39285958 -46409796 + MLT1L LTR MaLR 51 264 -247 21 0 0 0 chr15 39287682 39287703 -46408051 + AT_rich Low_complexity Low_complexity 1 21 0 708 144 19 3 chr15 39287801 39287973 -46407781 + MLT1E3 LTR MaLR 5 230 -424 1587 207 12 18 chr15 39288001 39288339 -46407415 + MLT1E3 LTR MaLR 289 624 0 428 275 100 10 chr15 39288841 39289041 -46406713 + LTR33 LTR ERVL 304 521 0 285 356 110 7 chr15 39289083 39289229 -46406525 + MIR3 SINE MIR 37 197 -11 921 184 134 20 chr15 39289633 39289834 -46405920 - MER58A DNA MER1_type 0 224 1 393 305 72 18 chr15 39290647 39290870 -46404884 + MARNA DNA Mariner 186 420 -166 23 0 0 0 chr15 39291368 39291391 -46404363 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 39293203 39293243 -46402511 + (TA)n Simple_repeat Simple_repeat 2 41 0 228 236 99 94 chr15 39293836 39294027 -46401727 - MLT1J LTR MaLR -112 399 208 5617 208 135 47 chr15 39294033 39295888 -46399866 - L1MCa LINE L1 -4392 2034 18 3440 210 76 40 chr15 39295883 39295978 -46399776 - L1M4 LINE L1 -745 5401 5311 * 2096 110 0 17 chr15 39295978 39296278 -46399476 - AluSx SINE Alu -15 297 3 3440 210 76 40 chr15 39296278 39297291 -46398463 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 39299217 39299372 -46396382 + MIR SINE MIR 38 221 -41 2213 115 0 0 chr15 39299372 39299677 -46396077 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 39299677 39299720 -46396034 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 39300199 39300222 -46395532 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 323 49 30 chr15 39300253 39300417 -46395337 + L1ME3A LINE L1 5429 5595 -2213 1451 136 12 0 chr15 39301075 39301326 -46394428 - L1MA5A LINE L1 -3 6294 6041 510 309 144 0 chr15 39301433 39301627 -46394127 - MIR SINE MIR -11 251 30 276 231 74 37 chr15 39301696 39301804 -46393950 - L1MA10 LINE L1 0 6334 6223 931 187 7 1 chr15 39301853 39302038 -46393716 - L1ME1 LINE L1 -290 5882 5693 4510 165 38 14 chr15 39302039 39303049 -46392705 + L1MB2 LINE L1 5105 6143 -28 243 169 0 123 chr15 39303063 39303128 -46392626 + L1ME3A LINE L1 5962 6018 -152 405 307 74 52 chr15 39303786 39304017 -46391737 - MIR SINE MIR -6 256 21 197 171 0 0 chr15 39304880 39304915 -46390839 + MER5B DNA MER1_type 1 35 -143 1655 217 79 26 chr15 39304917 39305196 -46390558 + MLT2B1 LTR ERVL 1 311 -209 2401 161 37 37 chr15 39305196 39305657 -46390097 - LOR1b LTR ERV1 0 461 1 1655 217 79 26 chr15 39305657 39305797 -46389957 + MLT2B1 LTR ERVL 311 442 -78 340 302 22 17 chr15 39305817 39305996 -46389758 + (TA)n Simple_repeat Simple_repeat 1 180 0 10251 194 46 24 chr15 39306100 39309004 -46386750 - L1M2 LINE L1 -639 5673 2699 1470 168 44 24 chr15 39309104 39309401 -46386353 + MER65A LTR ERV1 48 350 -95 5175 128 13 4 chr15 39309403 39310168 -46385586 + HSMAR1 DNA Mariner 27 798 -489 276 100 0 0 chr15 39310171 39310211 -46385543 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 2157 125 3 0 chr15 39310215 39310519 -46385235 - AluSq SINE Alu -8 305 1 3557 120 2 2 chr15 39310519 39311020 -46384734 + HSMAR1 DNA Mariner 785 1285 -2 444 143 12 24 chr15 39311020 39311100 -46384654 + MER65A LTR ERV1 365 443 -2 871 253 22 9 chr15 39311136 39311361 -46384393 + MER65A-int LTR ERV1 36 263 -4608 36658 99 9 12 chr15 39311374 39316842 -46378912 + L1P2 LINE L1 11 5462 -692 1665 145 10 51 chr15 39317048 39317359 -46378395 + AluJo SINE Alu 3 300 -12 207 343 133 0 chr15 39317523 39317628 -46378126 - L2 LINE L2 -15 3257 3139 293 328 105 51 chr15 39318078 39318374 -46377380 - L2 LINE L2 -701 2613 2302 1754 181 7 3 chr15 39318437 39318735 -46377019 - AluJb SINE Alu -13 299 1 315 318 132 16 chr15 39318847 39318976 -46376778 - MIR3 SINE MIR -10 198 55 208 325 128 20 chr15 39318978 39319181 -46376573 + L2 LINE L2 2514 2738 -576 1029 260 19 8 chr15 39319421 39319679 -46376075 + MIR SINE MIR 2 262 0 22 35 0 0 chr15 39320721 39320750 -46375004 + AT_rich Low_complexity Low_complexity 1 29 0 888 219 123 41 chr15 39321769 39322061 -46373693 + L2 LINE L2 2998 3313 0 234 200 0 60 chr15 39322485 39322535 -46373219 + MER2 DNA MER2_type 1 47 -298 511 246 120 24 chr15 39322602 39322769 -46372985 + MER2 DNA MER2_type 163 345 0 28 0 0 0 chr15 39323835 39323863 -46371891 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 39323911 39323934 -46371820 + AT_rich Low_complexity Low_complexity 1 23 0 309 250 110 0 chr15 39325658 39325758 -46369996 + MIR SINE MIR 34 144 -64 311 330 18 18 chr15 39325767 39325879 -46369875 - L2 LINE L2 -4 3268 3157 218 263 168 0 chr15 39325955 39326050 -46369704 - MIR SINE MIR -5 257 147 2059 84 7 4 chr15 39326135 39326409 -46369345 - AluSg SINE Alu -35 275 1 677 237 210 39 chr15 39327591 39327924 -46367830 - L2 LINE L2 0 3313 2924 3355 189 73 6 chr15 39328563 39329271 -46366483 + L1MB7 LINE L1 5429 6184 0 646 211 16 0 chr15 39329929 39330057 -46365697 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr15 39330081 39330104 -46365650 + (A)n Simple_repeat Simple_repeat 1 23 0 1271 155 148 55 chr15 39330275 39330585 -46365169 + MER44D DNA MER2_type 1 609 0 288 288 27 0 chr15 39330652 39330725 -46365029 + MER5A DNA MER1_type 112 186 -3 23 33 0 0 chr15 39330810 39330840 -46364914 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr15 39331539 39331595 -46364159 + AT_rich Low_complexity Low_complexity 1 56 0 344 258 0 0 chr15 39331603 39331696 -46364058 + L1ME1 LINE L1 6070 6162 -4 211 244 0 0 chr15 39331905 39331950 -46363804 + L2 LINE L2 3269 3313 0 226 316 38 38 chr15 39332812 39332891 -46362863 - MIR SINE MIR -148 114 36 2193 88 7 23 chr15 39333449 39333754 -46362000 + AluSx SINE Alu 1 300 -12 1459 208 13 16 chr15 39333904 39334217 -46361537 + AluJb SINE Alu 1 312 0 254 227 0 0 chr15 39334571 39334637 -46361117 + L1MA6 LINE L1 6090 6155 -145 777 199 63 21 chr15 39334637 39334828 -46360926 + AluJo SINE Alu 109 307 -5 462 138 174 0 chr15 39334831 39334940 -46360814 + L1MA4A LINE L1 6170 6297 -6 251 273 41 41 chr15 39336224 39336345 -46359409 + MARNA DNA Mariner 293 413 -173 383 65 81 0 chr15 39336565 39336627 -46359127 + Alu SINE Alu 232 298 -2 29 28 0 0 chr15 39336654 39336690 -46359064 + AT_rich Low_complexity Low_complexity 1 36 0 2090 113 17 0 chr15 39336759 39337050 -46358704 + AluSx SINE Alu 1 296 -16 29 47 0 0 chr15 39337452 39337495 -46358259 + AT_rich Low_complexity Low_complexity 1 43 0 395 280 38 23 chr15 39338661 39338793 -46356961 + MIR SINE MIR 73 206 -56 189 121 0 0 chr15 39338833 39338866 -46356888 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1080 215 5 0 chr15 39340235 39340440 -46355314 + MER3 DNA MER1_type 1 206 -3 207 222 238 48 chr15 39340500 39340626 -46355128 - MIR3 SINE MIR -46 162 13 981 6 72 0 chr15 39340658 39340824 -46354930 + (TA)n Simple_repeat Simple_repeat 1 178 0 201 196 0 0 chr15 39340866 39340912 -46354842 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 1039 124 77 0 chr15 39341012 39341181 -46354573 - L1PA12 LINE L1 -15 6153 5972 5336 163 49 9 chr15 39341286 39342355 -46353399 + L1MA4 LINE L1 3635 4745 -1401 4663 148 43 19 chr15 39342356 39343562 -46352192 + L1MA4 LINE L1 5114 6305 0 921 216 73 9 chr15 39343566 39343798 -46351956 + L1MB5 LINE L1 5920 6166 -8 481 307 52 89 chr15 39343804 39344286 -46351468 - LTR67 LTR ERVL -68 489 26 371 272 171 27 chr15 39344343 39344711 -46351043 + L1MB4 LINE L1 4124 4544 -1602 211 307 167 0 chr15 39344987 39345101 -46350653 + MIR SINE MIR 104 236 -26 2074 123 0 0 chr15 39345299 39345584 -46350170 - AluSq SINE Alu -22 291 7 2068 190 39 12 chr15 39346454 39346869 -46348885 - MSTB LTR MaLR 0 426 1 35 83 0 0 chr15 39346921 39347005 -46348749 + AT_rich Low_complexity Low_complexity 1 84 0 400 286 138 22 chr15 39347008 39347319 -46348435 - L1M4 LINE L1 -1005 5141 4795 1507 154 55 22 chr15 39347379 39347652 -46348102 + AluJo SINE Alu 1 282 -30 10916 194 53 7 chr15 39347667 39349947 -46345807 - Cheshire DNA MER1_type -33 2387 2 2238 174 45 5 chr15 39350952 39351371 -46344383 + L1MB2 LINE L1 5654 6089 -82 320 191 0 0 chr15 39351354 39351417 -46344337 + L1MB4 LINE L1 4781 4843 -1303 * 441 130 83 56 chr15 39351432 39351540 -46344214 - L1MB4 LINE L1 0 6180 6070 * 5732 217 48 17 chr15 39351509 39351923 -46343831 - L1M4 LINE L1 -1346 4800 4401 2148 136 91 10 chr15 39351923 39352319 -46343435 - MSTA LTR MaLR 0 428 1 5732 217 48 17 chr15 39352319 39352532 -46343222 - L1M4 LINE L1 -1745 4401 4196 513 47 0 0 chr15 39352532 39352596 -46343158 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5732 217 48 17 chr15 39352596 39352778 -46342976 - L1M4 LINE L1 -1950 4196 4021 1742 78 0 0 chr15 39352778 39352996 -46342758 - AluY SINE Alu -59 252 35 5732 217 48 17 chr15 39352996 39353670 -46342084 - L1M4 LINE L1 -2125 4021 3268 294 284 10 10 chr15 39353996 39354108 -46341646 + L1ME LINE L1 17 556 -5974 3505 237 56 39 chr15 39354745 39355421 -46340333 + L1ME LINE L1 917 1580 -4960 3309 169 40 29 chr15 39355421 39355504 -46340250 + L1MB4 LINE L1 5442 5523 -657 1917 150 142 8 chr15 39355504 39355898 -46339856 + MER83 LTR ERV1 1 447 -1 3309 169 40 29 chr15 39355898 39356544 -46339210 + L1MB4 LINE L1 5523 6179 -1 3505 237 56 39 chr15 39356544 39356667 -46339087 + L1ME LINE L1 1580 1699 -4841 1708 208 46 37 chr15 39356667 39357124 -46338630 + MER65C LTR ERV1 1 461 0 3505 237 56 39 chr15 39357124 39357735 -46338019 + L1ME LINE L1 1699 2316 -4224 1709 180 64 16 chr15 39357733 39358083 -46337671 + L1ME1 LINE L1 5542 5914 -252 * 3389 126 35 6 chr15 39358083 39358621 -46337133 + MER41C LTR ERV1 1 554 0 1709 180 64 16 chr15 39358621 39358658 -46337096 + L1ME1 LINE L1 5914 5948 -218 943 247 43 10 chr15 39358673 39358973 -46336781 + L1ME LINE L1 2880 3189 -3351 1274 201 49 7 chr15 39358975 39359259 -46336495 + L1ME LINE L1 5834 6129 -431 327 143 18 0 chr15 39359262 39359318 -46336436 - MLT1E3 LTR MaLR 0 624 568 2157 112 0 13 chr15 39359381 39359695 -46336059 + AluSx SINE Alu 1 310 -2 537 309 6 12 chr15 39359875 39360037 -46335717 + MIR SINE MIR 98 258 -4 349 111 0 0 chr15 39361098 39361118 -46334636 + MER51A LTR ERV1 1 20 -614 3899 114 42 10 chr15 39361118 39361738 -46334016 + MER51C LTR ERV1 1 640 0 413 343 80 26 chr15 39361785 39362313 -46333441 + L1MEd LINE L1 530 1085 -5120 515 311 120 11 chr15 39362454 39362921 -46332833 + L1MEd LINE L1 1303 1820 -4576 229 214 18 18 chr15 39363062 39363118 -46332636 + L2 LINE L2 3258 3313 0 233 311 9 47 chr15 39363252 39363358 -46332396 + Charlie8 DNA MER1_type 156 257 -2160 329 240 16 62 chr15 39363676 39363805 -46331949 + Charlie8 DNA MER1_type 126 248 -2169 409 253 113 48 chr15 39363842 39363953 -46331801 + L1MEd LINE L1 1963 2065 -4150 2271 136 17 3 chr15 39363953 39364314 -46331440 - MER47A DNA MER2_type 0 366 1 409 253 113 48 chr15 39364314 39364494 -46331260 + L1MEd LINE L1 2065 2273 -3942 359 189 84 0 chr15 39364515 39364610 -46331144 + L1MEd LINE L1 2329 2431 -3784 440 128 0 13 chr15 39364732 39364810 -46330944 - AluS SINE Alu -233 77 1 1458 251 71 11 chr15 39364811 39365261 -46330493 + L1MC5 LINE L1 5513 5989 -1819 530 272 65 26 chr15 39366742 39367069 -46328685 + L1MC5 LINE L1 7195 7448 -360 1866 156 0 13 chr15 39367101 39367408 -46328346 + AluJb SINE Alu 2 304 -8 266 286 82 60 chr15 39367489 39367671 -46328083 + L1MC4 LINE L1 7770 7955 -87 612 203 39 0 chr15 39367771 39367899 -46327855 + FLAM_A SINE Alu 1 133 0 284 252 49 65 chr15 39368004 39368127 -46327627 + MIR SINE MIR 24 144 -64 24 0 0 0 chr15 39369309 39369333 -46326421 + GC_rich Low_complexity Low_complexity 1 24 0 240 111 0 0 chr15 39369371 39369407 -46326347 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1803 187 39 39 chr15 39369957 39370418 -46325336 - MER65C LTR ERV1 0 461 1 1261 173 47 4 chr15 39371076 39371331 -46324423 - LTR54 LTR ERV1 -7 503 238 1033 167 0 0 chr15 39371360 39371522 -46324232 + FRAM SINE Alu 1 161 -15 955 132 102 49 chr15 39371526 39371731 -46324023 - LTR54 LTR ERV1 -277 233 18 2337 98 12 0 chr15 39371731 39372066 -46323688 + L1PB1 LINE L1 5811 6149 -2 340 290 40 106 chr15 39372814 39373135 -46322619 + MLT1K LTR MaLR 236 535 -53 253 239 145 83 chr15 39373144 39373674 -46322080 + MER34 LTR ERV1 61 542 0 458 282 103 34 chr15 39373726 39374135 -46321619 + MLT1J2 LTR MaLR 1 448 -2 1516 164 69 21 chr15 39374428 39374763 -46320991 - LTR48 LTR ERV1 0 787 437 897 165 30 4 chr15 39374773 39374962 -46320792 - LTR54 LTR ERV1 -92 418 238 829 182 0 0 chr15 39374979 39375111 -46320643 + FRAM SINE Alu 1 131 -45 1690 149 103 61 chr15 39375113 39375521 -46320233 - LTR48 LTR ERV1 -362 425 1 505 355 51 17 chr15 39375904 39376138 -46319616 + LTR16C LTR ERVL 74 315 -176 955 190 151 13 chr15 39376193 39376425 -46319329 + LTR50 LTR ERVL 12 275 -520 4618 168 37 8 chr15 39376451 39376700 -46319054 - L1 LINE L1 -1224 4922 4682 1736 163 9 41 chr15 39376700 39377019 -46318735 - AluJo SINE Alu -2 310 2 4618 168 37 8 chr15 39377019 39377694 -46318060 - L1 LINE L1 -1464 4682 3971 328 204 91 0 chr15 39377708 39377796 -46317958 + MER5C DNA MER1_type 225 320 -4 2301 103 0 0 chr15 39377800 39378101 -46317653 - AluSq SINE Alu -10 303 3 434 342 54 32 chr15 39378125 39378403 -46317351 + MLT1J2 LTR MaLR 153 436 -14 412 358 96 19 chr15 39378450 39378827 -46316927 + L2 LINE L2 2215 2620 -694 27 0 0 0 chr15 39379054 39379081 -46316673 + AT_rich Low_complexity Low_complexity 1 27 0 2154 115 3 3 chr15 39379533 39379829 -46315925 + AluSq SINE Alu 1 296 -17 1262 308 25 49 chr15 39380114 39380683 -46315071 + LTR67 LTR ERVL 3 557 0 354 357 70 6 chr15 39381202 39381359 -46314395 + L2 LINE L2 3105 3271 -1 22 0 0 0 chr15 39382120 39382142 -46313612 + AT_rich Low_complexity Low_complexity 1 22 0 380 262 113 47 chr15 39383161 39383394 -46312360 - L1MEd LINE L1 -4906 1213 960 734 191 0 8 chr15 39383394 39383520 -46312234 - FLAM_A SINE Alu -8 125 1 380 262 113 47 chr15 39383520 39383542 -46312212 - L1MEd LINE L1 -5159 960 941 204 216 0 0 chr15 39383701 39383738 -46312016 + (TG)n Simple_repeat Simple_repeat 2 38 0 1299 169 94 91 chr15 39384016 39384058 -46311696 - MSTC LTR MaLR -24 404 364 2355 99 0 0 chr15 39384058 39384361 -46311393 - AluSg SINE Alu -7 303 1 1299 169 94 91 chr15 39384361 39384691 -46311063 - MSTC LTR MaLR -64 364 31 339 312 107 40 chr15 39384700 39385027 -46310727 - L1MEd LINE L1 -5727 392 44 202 185 15 62 chr15 39385101 39385166 -46310588 + A-rich Low_complexity Low_complexity 3 64 0 21 57 0 0 chr15 39385201 39385236 -46310518 + AT_rich Low_complexity Low_complexity 1 35 0 2028 148 0 3 chr15 39385378 39385676 -46310078 + AluJb SINE Alu 1 297 -15 227 237 44 53 chr15 39385677 39385791 -46309963 + L1MC4 LINE L1 7914 8026 -16 24 0 0 0 chr15 39385797 39385821 -46309933 + AT_rich Low_complexity Low_complexity 1 24 0 328 147 44 0 chr15 39385844 39385912 -46309842 + L1M4 LINE L1 3875 3945 -2201 262 206 44 15 chr15 39386119 39386187 -46309567 - MER96 DNA MER1_type? 0 175 106 277 133 0 22 chr15 39386203 39386248 -46309506 - L1ME LINE L1 -543 5623 5580 2987 204 43 53 chr15 39386250 39387286 -46308468 - L1ME LINE L1 -659 5507 4492 10342 129 16 6 chr15 39387386 39389323 -46306431 - L1P4 LINE L1 -527 5641 3692 192 40 0 0 chr15 39389342 39389367 -46306387 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 267 312 0 13 chr15 39389384 39389461 -46306293 + MIR SINE MIR 175 250 -12 558 191 0 0 chr15 39389531 39389625 -46306129 - AluJb SINE Alu -17 295 202 1573 269 156 48 chr15 39389759 39390819 -46304935 + L2 LINE L2 2123 3309 -4 606 249 105 6 chr15 39391242 39391423 -46304331 + MIR SINE MIR 54 252 -10 35 24 0 0 chr15 39394380 39394422 -46301332 + AT_rich Low_complexity Low_complexity 1 42 0 514 261 126 55 chr15 39394482 39394681 -46301073 - MIR SINE MIR -24 238 26 2274 112 0 13 chr15 39394683 39394996 -46300758 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 39395778 39395799 -46299955 + AT_rich Low_complexity Low_complexity 1 21 0 1929 156 7 0 chr15 39397159 39397461 -46298293 - AluJb SINE Alu -8 304 1 26 30 0 0 chr15 39399600 39399633 -46296121 + AT_rich Low_complexity Low_complexity 1 33 0 415 310 50 47 chr15 39401537 39402026 -46293728 + HAL1b LINE L1 247 764 -584 257 0 30 0 chr15 39402026 39402059 -46293695 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 415 310 50 47 chr15 39402059 39402185 -46293569 + HAL1b LINE L1 764 888 -460 486 317 88 49 chr15 39402519 39402829 -46292925 + L1M4 LINE L1 2111 2407 -3739 2120 102 10 3 chr15 39402829 39403123 -46292631 - AluSx SINE Alu -16 296 1 486 317 88 49 chr15 39403123 39403424 -46292330 + L1M4 LINE L1 2407 2746 -3400 251 217 108 12 chr15 39403521 39403604 -46292150 + MIR SINE MIR 161 251 -11 2297 54 7 0 chr15 39404917 39405195 -46290559 + AluY SINE Alu 23 302 -9 30 89 0 0 chr15 39405472 39405551 -46290203 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr15 39405596 39405618 -46290136 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 39406177 39406209 -46289545 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 39406350 39406373 -46289381 + AT_rich Low_complexity Low_complexity 1 23 0 2429 73 0 0 chr15 39406785 39407086 -46288668 + AluY SINE Alu 1 301 -10 180 343 75 45 chr15 39407507 39407574 -46288180 + MIR SINE MIR 18 86 -176 392 292 60 87 chr15 39407609 39407794 -46287960 + MIR SINE MIR 68 247 -15 43 47 0 0 chr15 39409943 39410007 -46285747 + AT_rich Low_complexity Low_complexity 1 64 0 438 20 0 0 chr15 39410974 39411025 -46284729 + (CA)n Simple_repeat Simple_repeat 2 52 0 922 205 186 16 chr15 39411337 39411644 -46284110 + L1MD3 LINE L1 7625 7983 -12 240 251 177 89 chr15 39411684 39411752 -46284002 + L1ME LINE L1 5551 5612 -509 216 0 0 0 chr15 39411752 39411776 -46283978 + (TG)n Simple_repeat Simple_repeat 1 24 0 1976 149 0 0 chr15 39411776 39412058 -46283696 - AluSq SINE Alu -31 282 1 240 251 177 89 chr15 39412058 39412191 -46283563 + L1ME LINE L1 5611 5771 -350 2343 102 0 0 chr15 39412219 39412513 -46283241 - AluSc SINE Alu -15 294 1 438 355 25 10 chr15 39413027 39413227 -46282527 - MIR SINE MIR -58 204 2 323 286 31 31 chr15 39413427 39413525 -46282229 + MER5B DNA MER1_type 3 100 -78 2356 88 0 0 chr15 39413876 39414170 -46281584 - AluSx SINE Alu -18 294 1 3499 192 65 10 chr15 39414311 39415198 -46280556 - Charlie1a DNA MER1_type 0 1455 520 2015 182 85 74 chr15 39415203 39415781 -46279973 + MLT1E LTR MaLR 1 584 -9 23 33 0 0 chr15 39415804 39415834 -46279920 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 39416072 39416094 -46279660 + AT_rich Low_complexity Low_complexity 1 22 0 1849 198 54 40 chr15 39416329 39416830 -46278924 - Charlie1a DNA MER1_type -946 509 2 801 293 7 4 chr15 39416908 39417138 -46278616 + MIR SINE MIR 28 260 -2 22 56 0 0 chr15 39417917 39417953 -46277801 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 39419596 39419646 -46276108 + (CA)n Simple_repeat Simple_repeat 2 51 0 1924 156 3 0 chr15 39420257 39420561 -46275193 + AluJb SINE Alu 1 305 0 1997 140 0 10 chr15 39421388 39421681 -46274073 + AluSx SINE Alu 5 294 -18 266 346 126 22 chr15 39422110 39422292 -46273462 + MIR SINE MIR 21 221 -41 2056 146 12 86 chr15 39422650 39422878 -46272876 + MLT1B LTR MaLR 4 189 -201 2080 131 0 10 chr15 39422878 39423190 -46272564 + AluSx SINE Alu 1 309 -3 2056 146 12 86 chr15 39423190 39423379 -46272375 + MLT1B LTR MaLR 189 390 0 25 31 0 0 chr15 39423478 39423510 -46272244 + AT_rich Low_complexity Low_complexity 1 32 0 300 298 50 25 chr15 39424463 39424584 -46271170 - L2 LINE L2 0 3272 3149 7363 45 1 0 chr15 39425276 39426705 -46269049 + L1PA5 LINE L1 4724 6153 -1 2154 83 6 55 chr15 39426806 39427132 -46268622 + AluSx SINE Alu 1 310 -2 534 265 37 90 chr15 39427779 39428024 -46267730 + MIR SINE MIR 21 252 -10 2061 113 13 10 chr15 39428069 39428369 -46267385 + AluSx SINE Alu 1 301 -11 1641 138 100 25 chr15 39428440 39428760 -46266994 - MER7A DNA MER2_type -2 344 3 891 157 94 13 chr15 39429045 39429204 -46266550 + AluJb SINE Alu 1 172 -140 2661 238 68 32 chr15 39429312 39429604 -46266150 - L1M4 LINE L1 -1744 4402 4122 2316 93 0 10 chr15 39429604 39429915 -46265839 - AluSg SINE Alu 0 310 3 2661 238 68 32 chr15 39429915 39430570 -46265184 - L1M4 LINE L1 -2024 4122 3421 1111 139 41 0 chr15 39430563 39430757 -46264997 - L1MC2 LINE L1 -511 5833 5632 * 370 345 9 0 chr15 39430759 39430869 -46264885 - MIR SINE MIR -150 112 2 562 101 18 55 chr15 39431034 39431143 -46264611 + L1MB4 LINE L1 6065 6169 -11 594 198 16 2 chr15 39431529 39431679 -46264075 - L1M4 LINE L1 -2693 3453 3303 558 264 140 11 chr15 39431788 39432014 -46263740 + MIR SINE MIR 7 258 -4 211 191 0 0 chr15 39432968 39433010 -46262744 + CT-rich Low_complexity Low_complexity 2 43 0 2742 172 20 57 chr15 39433355 39434513 -46261241 + L1MB8 LINE L1 4773 5830 -354 1193 158 49 1 chr15 39434515 39434802 -46260952 + MER2 DNA MER2_type 4 340 -5 1544 156 6 52 chr15 39434807 39435154 -46260600 + L1MB8 LINE L1 5828 6158 -20 1984 147 10 0 chr15 39435209 39435516 -46260238 + AluSx SINE Alu 1 310 -2 276 30 0 0 chr15 39435516 39435549 -46260205 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 335 276 112 0 chr15 39435761 39435877 -46259877 - L2 LINE L2 -4 3309 3181 321 285 101 51 chr15 39435877 39436035 -46259719 - L2 LINE L2 -247 3066 2901 875 178 56 6 chr15 39436035 39436215 -46259539 - MER5A DNA MER1_type 0 189 1 768 232 7 0 chr15 39436269 39436424 -46259330 - MER63A DNA MER1_type 0 210 55 614 272 31 11 chr15 39436436 39436627 -46259127 - L2 LINE L2 -462 2852 2658 372 234 23 70 chr15 39436663 39436791 -46258963 + MLT1J LTR MaLR 78 199 -312 314 236 14 14 chr15 39437077 39437149 -46258605 - L2 LINE L2 -664 2650 2579 267 253 115 52 chr15 39437164 39437338 -46258416 + LTR33A LTR ERVL 2 186 -337 528 160 0 0 chr15 39437340 39437440 -46258314 + CT-rich Low_complexity Low_complexity 3 102 0 207 0 0 0 chr15 39437436 39437459 -46258295 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 427 245 112 0 chr15 39437520 39437663 -46258091 + LTR33A LTR ERVL 365 523 0 236 245 41 0 chr15 39437665 39437763 -46257991 - L2 LINE L2 -738 2576 2475 223 327 137 7 chr15 39437797 39437950 -46257804 + L2 LINE L2 2366 2538 -776 379 279 122 17 chr15 39438371 39438543 -46257211 + MIR SINE MIR 63 252 -10 1902 111 32 87 chr15 39439356 39439734 -46256020 + MLT2D LTR ERVL 1 357 -57 387 0 0 0 chr15 39439734 39439777 -46255977 + (TC)n Simple_repeat Simple_repeat 2 44 0 309 230 0 0 chr15 39440115 39440189 -46255565 + (TA)n Simple_repeat Simple_repeat 1 74 0 32 0 0 0 chr15 39440740 39440772 -46254982 + AT_rich Low_complexity Low_complexity 1 32 0 2218 115 0 3 chr15 39440992 39441296 -46254458 + AluSp SINE Alu 1 303 -10 738 208 42 17 chr15 39441562 39441897 -46253857 - MLT1D LTR MaLR -7 498 84 368 153 59 110 chr15 39441898 39442016 -46253738 + L2 LINE L2 2573 2684 -630 * 991 261 63 35 chr15 39442015 39442333 -46253421 - L2 LINE L2 -946 2368 2042 898 237 9 0 chr15 39442334 39442545 -46253209 + LTR16B LTR ERVL 252 464 0 1644 173 14 14 chr15 39442573 39442868 -46252886 + AluJo SINE Alu 1 295 -17 655 262 47 37 chr15 39442916 39443130 -46252624 - L2 LINE L2 -1545 1769 1554 383 329 28 19 chr15 39443233 39443393 -46252361 - MIR SINE MIR -59 203 42 2198 135 0 6 chr15 39445326 39445638 -46250116 - AluSx SINE Alu -2 310 1 231 234 106 32 chr15 39445667 39445761 -46249993 + L2 LINE L2 3204 3304 -9 480 136 0 12 chr15 39446412 39446493 -46249261 + MER39 LTR ERV1 6 85 -622 1294 153 9 0 chr15 39446493 39446716 -46249038 - MER41C LTR ERV1 0 554 330 2145 160 127 55 chr15 39446750 39446895 -46248859 + MER39 LTR ERV1 94 227 -480 1570 191 14 3 chr15 39446895 39447183 -46248571 + AluJo SINE Alu 11 301 -11 2145 160 127 55 chr15 39447183 39447411 -46248343 + MER39 LTR ERV1 227 437 -270 1889 128 59 0 chr15 39447411 39447700 -46248054 + AluSx SINE Alu 1 306 -6 2145 160 127 55 chr15 39447700 39447894 -46247860 + MER39 LTR ERV1 437 703 -4 2589 150 71 4 chr15 39448434 39448927 -46246827 - LTR48B LTR ERV1 0 644 119 4703 115 20 43 chr15 39449516 39450936 -46244818 + pTR5 LTR ERV1 743 2438 0 2103 116 14 7 chr15 39451355 39451648 -46244106 + AluSx SINE Alu 1 295 -17 2182 167 0 31 chr15 39451737 39452106 -46243648 + MER41B LTR ERV1 150 505 -130 1936 145 0 0 chr15 39452106 39452416 -46243338 - AluSx SINE Alu 0 310 1 2182 167 0 31 chr15 39452416 39452489 -46243265 + MER41B LTR ERV1 505 579 -56 466 226 169 16 chr15 39452665 39452855 -46242899 + MIR SINE MIR 32 256 -6 263 347 104 52 chr15 39453081 39453349 -46242405 - L2 LINE L2 -3 3269 2988 4178 129 3 2 chr15 39453407 39454041 -46241713 + MER41B LTR ERV1 1 635 0 254 240 70 30 chr15 39454070 39454170 -46241584 - MLT1J LTR MaLR -22 489 386 3735 109 72 5 chr15 39454294 39454888 -46240866 + MER41B LTR ERV1 1 634 -1 260 261 29 0 chr15 39454913 39454982 -46240772 - MLT1L LTR MaLR -335 280 210 198 0 0 0 chr15 39455287 39455309 -46240445 + (A)n Simple_repeat Simple_repeat 1 22 0 603 150 20 0 chr15 39455312 39455412 -46240342 - FLAM_A SINE Alu -20 122 21 2017 138 0 22 chr15 39455883 39456202 -46239552 - AluJb SINE Alu 0 312 1 285 65 87 11 chr15 39456244 39456336 -46239418 + (TA)n Simple_repeat Simple_repeat 2 100 0 300 134 42 21 chr15 39456439 39456581 -46239173 + (TA)n Simple_repeat Simple_repeat 2 146 0 1747 254 118 51 chr15 39456602 39457542 -46238212 - HAL1 LINE L1 -398 2109 1060 2146 110 34 0 chr15 39457542 39457833 -46237921 - AluSg SINE Alu -7 303 3 1747 254 118 51 chr15 39457833 39458165 -46237589 - HAL1 LINE L1 -1447 1060 752 1484 199 17 10 chr15 39458431 39458728 -46237026 + MER47B DNA MER2_type 2 300 -118 7120 60 3 0 chr15 39458728 39460164 -46235590 + L1PA8 LINE L1 4713 6159 -13 628 139 15 80 chr15 39460489 39460541 -46235213 + MER47B DNA MER2_type 291 345 -1978 1637 214 3 3 chr15 39460541 39460844 -46234910 - AluJo SINE Alu -9 303 1 628 139 15 80 chr15 39460844 39460928 -46234826 + MER47B DNA MER2_type 345 418 0 432 247 26 2 chr15 39461032 39461157 -46234597 - L1MC/D LINE L1 -469 5652 5540 21 36 0 0 chr15 39461292 39461320 -46234434 + AT_rich Low_complexity Low_complexity 1 28 0 5767 116 3 10 chr15 39461425 39462344 -46233410 - L1PA16 LINE L1 0 6166 5254 5859 117 0 0 chr15 39461443 39462673 -46233081 - L1PA16 LINE L1 -18 6148 4925 5707 175 8 8 chr15 39462673 39463827 -46231927 + L1PA16 LINE L1 3796 4949 -1197 302 156 42 73 chr15 39463973 39464069 -46231685 - L1MC/D LINE L1 -322 5799 5724 371 326 79 45 chr15 39464169 39464460 -46231294 - L3 LINE CR1 -353 1224 924 362 324 45 34 chr15 39464480 39464659 -46231095 + L3 LINE CR1 708 888 -689 198 167 83 0 chr15 39464720 39464768 -46230986 - L3 LINE CR1 -581 996 945 354 328 76 0 chr15 39465288 39465407 -46230347 + L3 LINE CR1 980 1107 -470 1538 148 16 4 chr15 39465407 39465657 -46230097 - MLT1B LTR MaLR 0 390 138 2249 113 10 0 chr15 39465859 39466169 -46229585 + AluSq SINE Alu 1 313 0 870 143 0 26 chr15 39466231 39466274 -46229480 - MLT1B LTR MaLR -240 150 107 2339 88 0 16 chr15 39466274 39466581 -46229173 - AluSx SINE Alu -8 304 3 870 143 0 26 chr15 39466581 39466691 -46229063 - MLT1B LTR MaLR -283 107 1 405 227 0 0 chr15 39466980 39467055 -46228699 + MIR3 SINE MIR 127 201 -7 30 27 0 0 chr15 39467066 39467103 -46228651 + AT_rich Low_complexity Low_complexity 1 37 0 345 169 0 0 chr15 39468205 39468264 -46227490 - MLT1G1 LTR MaLR 0 595 537 889 199 17 6 chr15 39468265 39468441 -46227313 - MER58A DNA MER1_type -4 220 43 1554 166 91 11 chr15 39468444 39468709 -46227045 + AluJo SINE Alu 1 286 -26 313 254 207 37 chr15 39468824 39469187 -46226567 - MLT1H LTR MaLR -92 503 72 1640 146 91 11 chr15 39469632 39469906 -46225848 + AluJb SINE Alu 6 301 -11 1896 214 126 10 chr15 39469930 39470508 -46225246 - L1MC4 LINE L1 -674 7368 6724 2097 131 0 0 chr15 39470518 39470808 -46224946 - AluSx SINE Alu -22 290 1 1180 246 62 0 chr15 39471132 39471437 -46224317 + LTR16C LTR ERVL 168 491 0 248 269 134 25 chr15 39471780 39471899 -46223855 + L2 LINE L2 3182 3313 0 23 0 0 0 chr15 39472036 39472059 -46223695 + AT_rich Low_complexity Low_complexity 1 23 0 292 211 40 0 chr15 39472533 39472609 -46223145 + MLT1K LTR MaLR 492 570 -18 1547 178 25 4 chr15 39472742 39473017 -46222737 + AluJo SINE Alu 22 302 -10 270 56 0 0 chr15 39473017 39473053 -46222701 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 465 353 69 30 chr15 39473452 39473786 -46221968 + L2 LINE L2 2319 2665 -649 269 309 117 11 chr15 39473940 39474034 -46221720 + MLT1K LTR MaLR 42 145 -443 286 289 19 10 chr15 39474078 39474182 -46221572 + MLT1K LTR MaLR 142 246 -342 428 147 15 0 chr15 39475655 39475723 -46220031 - Tigger7 DNA MER2_type -8 2479 2411 2869 184 19 2 chr15 39475733 39476249 -46219505 - Tigger7 DNA MER2_type -1961 526 2 1886 147 3 0 chr15 39476610 39476896 -46218858 + AluJo SINE Alu 1 287 -25 2452 132 38 73 chr15 39476910 39477433 -46218321 + L1MB3 LINE L1 5679 6183 0 261 132 0 0 chr15 39477433 39477486 -46218268 + L1MB3 LINE L1 6131 6183 0 375 259 12 12 chr15 39477580 39477665 -46218089 - L2 LINE L2 -37 3276 3192 930 282 80 17 chr15 39477774 39478125 -46217629 - MLT1J LTR MaLR -138 373 1 273 279 53 128 chr15 39478288 39478664 -46217090 - MLT1G1-int LTR MaLR -184 1187 840 502 332 20 0 chr15 39479040 39479290 -46216464 - MLT1G1-int LTR MaLR -832 539 285 249 254 93 8 chr15 39479292 39479410 -46216344 - MLT1G1-int LTR MaLR -1235 136 9 1231 261 156 16 chr15 39479416 39479929 -46215825 - MLT1G1 LTR MaLR 0 595 11 274 246 14 0 chr15 39479941 39480010 -46215744 + LTR16A1 LTR ERVL 380 449 -8 2250 153 57 39 chr15 39480010 39480469 -46215285 - MLT1C LTR MaLR 0 467 1 2278 150 81 25 chr15 39480508 39480729 -46215025 + MER61D LTR ERV1 30 237 -264 2252 116 73 14 chr15 39480729 39481073 -46214681 + THE1B LTR MaLR 1 364 0 2278 150 81 25 chr15 39481073 39481298 -46214456 + MER61D LTR ERV1 237 501 0 2356 110 0 0 chr15 39481326 39481635 -46214119 + AluSx SINE Alu 3 311 -1 217 302 167 10 chr15 39481636 39481732 -46214022 + MIR SINE MIR 151 261 -1 215 255 0 0 chr15 39481734 39481781 -46213973 + L2 LINE L2 3193 3239 -33 229 283 0 0 chr15 39481786 39481846 -46213908 + MLT1K LTR MaLR 3 62 -526 756 317 44 30 chr15 39483623 39483989 -46211765 + MLT1K LTR MaLR 56 426 -162 919 259 73 75 chr15 39484055 39484576 -46211178 + LTR67 LTR ERVL 29 548 -9 331 308 45 30 chr15 39484633 39484765 -46210989 - MIR SINE MIR -88 174 42 284 171 0 53 chr15 39485511 39485587 -46210167 - LTR33 LTR ERVL 0 521 450 1891 119 3 59 chr15 39485596 39485921 -46209833 + AluSx SINE Alu 1 308 0 649 123 160 0 chr15 39485959 39486065 -46209689 - FLAM_C SINE Alu -10 123 1 367 243 97 28 chr15 39486122 39486266 -46209488 - LTR33 LTR ERVL -164 357 204 326 191 155 0 chr15 39486342 39486426 -46209328 - LTR33 LTR ERVL -424 97 1 2391 85 13 0 chr15 39486525 39486831 -46208923 - AluSx SINE Alu -2 310 1 410 371 27 11 chr15 39486908 39487094 -46208660 - MIR3 SINE MIR -4 204 16 823 159 31 45 chr15 39488158 39488354 -46207400 - MER31B LTR ERV1 -302 164 1 282 160 0 0 chr15 39488418 39488468 -46207286 + GA-rich Low_complexity Low_complexity 3 52 0 360 195 187 8 chr15 39488542 39488665 -46207089 - MARNA DNA Mariner -249 337 193 282 267 167 11 chr15 39488665 39488755 -46206999 - MER81 DNA DNA 0 114 11 226 208 0 19 chr15 39488831 39488884 -46206870 + MARNA DNA Mariner 397 448 -138 22 0 0 0 chr15 39489120 39489142 -46206612 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr15 39489249 39489282 -46206472 + (TG)n Simple_repeat Simple_repeat 1 33 0 2482 269 96 27 chr15 39490198 39491239 -46204515 + L2 LINE L2 1383 2495 -819 740 216 41 5 chr15 39493440 39493634 -46202120 - MER3 DNA MER1_type -4 205 5 1895 149 21 0 chr15 39493683 39493971 -46201783 - AluSx SINE Alu -18 294 1 591 259 86 0 chr15 39494118 39494280 -46201474 - MER45A DNA AcHobo -1 177 2 2182 121 7 0 chr15 39494781 39495079 -46200675 + AluSq SINE Alu 11 310 -3 1939 137 38 10 chr15 39495732 39496025 -46199729 + AluSx SINE Alu 1 301 -11 763 155 23 0 chr15 39496084 39496213 -46199541 + AluSg/x SINE Alu 180 311 -1 342 262 157 56 chr15 39496223 39496509 -46199245 + L1ME LINE L1 2128 2442 -3704 411 268 114 87 chr15 39496737 39497810 -46197944 + L1ME LINE L1 2675 3776 -2370 689 298 43 10 chr15 39498299 39498598 -46197156 - MLT1J LTR MaLR -200 311 3 339 344 51 27 chr15 39498608 39498864 -46196890 + L1ME LINE L1 4009 4270 -1876 324 0 0 0 chr15 39498922 39498958 -46196796 + (TG)n Simple_repeat Simple_repeat 1 36 0 2228 120 0 7 chr15 39499346 39499647 -46196107 + AluSx SINE Alu 1 299 -13 234 257 48 9 chr15 39499756 39499861 -46195893 + L1ME LINE L1 4908 5016 -1130 866 275 43 36 chr15 39500082 39500570 -46195184 + L1ME LINE L1 5257 5751 -411 1788 174 3 16 chr15 39500588 39500898 -46194856 + AluJb SINE Alu 5 310 -2 24 53 0 0 chr15 39501423 39501461 -46194293 + AT_rich Low_complexity Low_complexity 1 38 0 2267 113 0 10 chr15 39503188 39503497 -46192257 + AluSg SINE Alu 1 306 -4 345 325 31 55 chr15 39503547 39503710 -46192044 - MIR3 SINE MIR -16 192 34 217 343 14 21 chr15 39503936 39504079 -46191675 + L2 LINE L2 2814 2955 -317 475 355 46 55 chr15 39504159 39504506 -46191248 - L2 LINE L2 -1 3271 2928 215 216 0 0 chr15 39505492 39505529 -46190225 + (TG)n Simple_repeat Simple_repeat 2 38 0 544 276 36 55 chr15 39506067 39506342 -46189412 + MLT1K LTR MaLR 234 503 -85 423 56 0 0 chr15 39506648 39506702 -46189052 + (TA)n Simple_repeat Simple_repeat 2 55 0 298 319 83 35 chr15 39506849 39506993 -46188761 - L2 LINE L2 0 3272 3122 21 0 0 0 chr15 39507347 39507368 -46188386 + AT_rich Low_complexity Low_complexity 1 21 0 373 318 108 0 chr15 39507954 39508083 -46187671 - MIR3 SINE MIR -22 186 44 1745 164 63 0 chr15 39508343 39508629 -46187125 - AluJo SINE Alu -8 304 1 27 0 0 0 chr15 39509212 39509239 -46186515 + AT_rich Low_complexity Low_complexity 1 27 0 1962 150 3 0 chr15 39509316 39509610 -46186144 - AluSx SINE Alu -17 295 1 704 288 88 25 chr15 39510145 39510465 -46185289 + L2 LINE L2 2194 2533 -781 391 281 30 43 chr15 39510491 39510655 -46185099 + L1ME LINE L1 5615 5776 -345 21 57 0 0 chr15 39510716 39510751 -46185003 + AT_rich Low_complexity Low_complexity 1 35 0 963 204 26 48 chr15 39510753 39511067 -46184687 - L1MA9 LINE L1 -42 6270 5971 1047 311 58 34 chr15 39511084 39512133 -46183621 + L1MEd LINE L1 357 1531 -1045 334 286 0 0 chr15 39512194 39512306 -46183448 + L1MEd LINE L1 1583 1694 -4702 24 0 0 0 chr15 39512446 39512470 -46183284 + AT_rich Low_complexity Low_complexity 1 24 0 612 327 46 13 chr15 39512751 39513057 -46182697 - LTR33 LTR ERVL 0 521 206 309 230 46 11 chr15 39513092 39513179 -46182575 - LTR33 LTR ERVL -389 132 43 627 270 38 96 chr15 39513219 39513333 -46182421 + L1MEd LINE L1 2197 2316 -4080 2039 106 3 27 chr15 39513333 39513669 -46182085 - AluSx SINE Alu 0 329 1 627 270 38 96 chr15 39513669 39513898 -46181856 + L1MEd LINE L1 2316 2521 -3875 541 217 54 8 chr15 39513904 39514033 -46181721 + MER63 DNA MER1_type 4 764 -72 296 251 94 21 chr15 39514215 39514406 -46181348 + L1MC4 LINE L1 7703 7907 -135 235 217 0 0 chr15 39514440 39514486 -46181268 + CT-rich Low_complexity Low_complexity 3 48 0 1121 272 80 61 chr15 39514487 39515211 -46180543 + L1ME3 LINE L1 47 784 -5758 299 314 12 0 chr15 39515231 39515317 -46180437 + CT-rich Low_complexity Low_complexity 2 88 0 1471 220 91 37 chr15 39515319 39515881 -46179873 + L1ME3 LINE L1 1866 2463 -4183 1696 59 0 51 chr15 39515881 39516117 -46179637 - AluY SINE Alu -3 308 85 1471 220 91 37 chr15 39516117 39516149 -46179605 + L1ME3 LINE L1 2463 2492 -4154 587 121 0 0 chr15 39516151 39516234 -46179520 + FRAM SINE Alu 72 154 -22 398 161 9 27 chr15 39516238 39516350 -46179404 + L1ME3 LINE L1 2485 2594 -4052 4264 133 3 9 chr15 39516867 39517553 -46178201 - L1PB4 LINE L1 0 6156 5475 689 152 18 88 chr15 39517603 39517721 -46178033 + L1ME3 LINE L1 2582 2722 -3985 2326 89 0 0 chr15 39517721 39518034 -46177720 - AluSc SINE Alu 0 313 1 689 152 18 88 chr15 39518034 39518130 -46177624 + L1ME3 LINE L1 2722 2823 -3884 1490 187 57 76 chr15 39518135 39518304 -46177450 + MLT1C LTR MaLR 6 177 -290 1220 163 0 184 chr15 39518304 39518673 -46177081 + AluJo SINE Alu 1 301 -1 1490 187 57 76 chr15 39518673 39518974 -46176780 + MLT1C LTR MaLR 177 467 0 1961 216 31 63 chr15 39518974 39519304 -46176450 + L1MB5 LINE L1 2779 3118 -3526 1510 88 17 58 chr15 39519304 39519544 -46176210 - MER30 DNA MER1_type 0 230 1 1961 216 31 63 chr15 39519544 39519959 -46175795 + L1MB5 LINE L1 3118 3500 -3144 1555 168 90 0 chr15 39519988 39520256 -46175498 + AluJb SINE Alu 5 296 -16 180 0 0 0 chr15 39520285 39520305 -46175449 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6209 196 49 20 chr15 39520307 39521468 -46174286 + L1MB5 LINE L1 4000 5126 -1546 2140 113 10 0 chr15 39521468 39521769 -46173985 + AluSq SINE Alu 1 304 -9 6209 196 49 20 chr15 39521769 39522311 -46173443 + L1MB5 LINE L1 5126 5651 -1021 2086 93 33 37 chr15 39522311 39522611 -46173143 + AluSg SINE Alu 1 299 -11 6209 196 49 20 chr15 39522611 39523504 -46172250 + L1MB5 LINE L1 5651 6672 0 385 333 60 15 chr15 39523703 39523970 -46171784 + L1ME3 LINE L1 2980 3258 -3386 552 178 0 10 chr15 39524212 39524313 -46171441 - FLAM_C SINE Alu -11 132 33 483 279 68 76 chr15 39524420 39524781 -46170973 + L1ME3 LINE L1 3613 3975 -2669 1929 127 34 0 chr15 39524781 39525072 -46170682 + AluSx SINE Alu 1 301 -11 483 279 68 76 chr15 39525072 39525116 -46170638 + L1ME3 LINE L1 3975 4018 -2626 468 48 0 0 chr15 39525116 39525179 -46170575 + (CA)n Simple_repeat Simple_repeat 1 63 0 483 279 68 76 chr15 39525179 39525429 -46170325 + L1ME3 LINE L1 4018 4264 -2380 464 268 22 7 chr15 39525504 39525642 -46170112 + MER63A DNA MER1_type 48 187 -23 595 288 68 3 chr15 39525648 39525959 -46169795 + L1ME3 LINE L1 5358 5698 -946 289 342 83 51 chr15 39526127 39526478 -46169276 + L2 LINE L2 1752 2113 -1201 212 146 49 0 chr15 39526510 39526551 -46169203 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 341 250 26 79 chr15 39526552 39526704 -46169050 - HAL1b LINE L1 -12 1336 1193 476 283 82 45 chr15 39526809 39527050 -46168704 - MIR SINE MIR 0 262 17 439 292 137 35 chr15 39527199 39527565 -46168189 - MLT1L LTR MaLR -210 405 3 668 267 66 18 chr15 39527588 39527861 -46167893 - L1ME LINE L1 -336 5785 5500 250 367 20 0 chr15 39528089 39528187 -46167567 + L2 LINE L2 3160 3259 -13 381 299 101 66 chr15 39528187 39528552 -46167202 - L1ME4a LINE L1 -197 5924 5547 2519 76 0 16 chr15 39528553 39528867 -46166887 - AluSq SINE Alu -4 309 1 225 277 92 29 chr15 39528891 39529129 -46166625 - L1ME4a LINE L1 -723 5519 5267 264 317 30 30 chr15 39529329 39529430 -46166324 + L2 LINE L2 2622 2722 -592 624 273 32 32 chr15 39529691 39529944 -46165810 + L1ME3 LINE L1 6164 6416 -244 1365 187 43 126 chr15 39529965 39530262 -46165492 + L1PB2 LINE L1 5138 5458 -693 2084 124 6 40 chr15 39530262 39530584 -46165170 + AluSq SINE Alu 1 311 -2 1365 187 43 126 chr15 39530584 39530669 -46165085 + L1PB2 LINE L1 5458 5548 -603 2250 109 0 3 chr15 39530669 39530980 -46164774 + AluSg SINE Alu 1 310 0 1365 187 43 126 chr15 39530980 39531796 -46163958 + L1PB2 LINE L1 5548 5937 -214 3529 120 53 61 chr15 39530980 39531307 -46164447 + L1MA8 LINE L1 5432 5760 -531 2296 101 0 10 chr15 39531307 39531613 -46164141 + AluSx SINE Alu 1 303 -9 3529 120 53 61 chr15 39531613 39532020 -46163734 + L1MA8 LINE L1 5760 6160 -131 * 5792 90 24 39 chr15 39532014 39532976 -46162778 + L1MA2 LINE L1 5353 6300 -4 737 114 15 0 chr15 39532996 39533127 -46162627 + L1MA8 LINE L1 6158 6290 -1 1609 246 27 14 chr15 39533141 39533766 -46161988 + L1M4 LINE L1 2148 2780 -3366 * 5272 204 36 69 chr15 39533765 39533891 -46161863 + L1M4 LINE L1 3087 3216 -2930 1989 149 0 0 chr15 39533891 39534180 -46161574 + AluJo SINE Alu 12 300 -12 5272 204 36 69 chr15 39534180 39534465 -46161289 + L1M4 LINE L1 3216 3509 -2637 1656 128 0 16 chr15 39534465 39534708 -46161046 + AluSq SINE Alu 1 239 -74 5272 204 36 69 chr15 39534708 39536202 -46159552 + L1M4 LINE L1 3509 4930 -1216 1922 119 3 33 chr15 39536372 39536675 -46159079 + AluSx SINE Alu 1 294 -18 264 248 30 0 chr15 39536722 39536823 -46158931 + L1M LINE L1 5325 5428 -931 246 268 244 0 chr15 39537163 39537245 -46158509 - MIR SINE MIR -43 219 118 435 149 0 0 chr15 39537255 39537322 -46158432 - Charlie3 DNA MER1_type -9 2701 2635 277 240 45 0 chr15 39537622 39537689 -46158065 + MIR SINE MIR 34 100 -108 214 261 204 23 chr15 39538157 39538245 -46157509 + L2 LINE L2 3169 3272 0 2005 147 17 20 chr15 39539327 39539675 -46156079 - MER7A DNA MER2_type 0 346 2 406 245 49 0 chr15 39539738 39539840 -46155914 - MER91C DNA MER1_type 0 140 34 722 205 9 112 chr15 39540046 39540129 -46155625 - MIR SINE MIR 0 262 172 2334 75 0 32 chr15 39540129 39540437 -46155317 - AluY SINE Alu -13 298 1 722 205 9 112 chr15 39540437 39540568 -46155186 - MIR SINE MIR -90 172 70 1825 159 3 34 chr15 39540755 39541076 -46154678 + AluJb SINE Alu 1 311 -1 206 304 51 25 chr15 39542889 39542968 -46152786 - L2 LINE L2 -8 3305 3225 268 323 43 0 chr15 39543011 39543104 -46152650 - L2 LINE L2 -816 2498 2402 537 266 78 115 chr15 39543111 39543634 -46152120 + MLT1J LTR MaLR 7 510 -1 831 138 24 95 chr15 39543922 39543991 -46151763 - Tigger6 DNA MER2_type -16 1581 1509 2236 91 3 3 chr15 39543991 39544276 -46151478 + AluSc SINE Alu 1 285 -24 831 138 24 95 chr15 39544276 39544415 -46151339 - Tigger6 DNA MER2_type -88 1509 1388 879 137 7 14 chr15 39544415 39544561 -46151193 - Tigger7 DNA MER2_type -1 2490 2346 852 148 0 0 chr15 39544561 39544683 -46151071 + FLAM_C SINE Alu 2 123 -10 257 227 21 165 chr15 39544778 39544972 -46150782 - L2 LINE L2 -36 3277 3112 475 227 32 19 chr15 39545061 39545215 -46150539 + L1MC4 LINE L1 7421 7576 -466 1600 134 0 4 chr15 39545581 39545819 -46149935 + AluSx SINE Alu 59 295 -17 1547 160 69 45 chr15 39545822 39546110 -46149644 + AluJo SINE Alu 1 295 -17 1356 156 46 66 chr15 39546110 39546168 -46149586 - Charlie1a DNA MER1_type -1423 1338 1280 1952 132 3 26 chr15 39546168 39546516 -46149238 + L1MB3 LINE L1 5842 6181 -2 1356 156 46 66 chr15 39546516 39546654 -46149100 - Charlie1a DNA MER1_type -1481 1280 1141 2194 74 78 0 chr15 39546654 39546937 -46148817 + AluSx SINE Alu 1 305 -7 1356 156 46 66 chr15 39546937 39547131 -46148623 - Charlie1a DNA MER1_type -1620 1141 955 2160 125 0 0 chr15 39547146 39547441 -46148313 + AluY SINE Alu 1 295 -16 1822 212 50 13 chr15 39547442 39547905 -46147849 - Charlie1a DNA MER1_type -648 807 328 1543 261 80 33 chr15 39547907 39548150 -46147604 + L1M4 LINE L1 3957 4187 -1959 2294 114 0 0 chr15 39548150 39548456 -46147298 + AluSg SINE Alu 1 306 -4 1543 261 80 33 chr15 39548456 39548916 -46146838 + L1M4 LINE L1 4187 4693 -1453 1532 203 4 4 chr15 39548977 39549282 -46146472 - AluJo SINE Alu 0 306 2 1139 232 43 65 chr15 39549284 39549629 -46146125 + L1ME3 LINE L1 3325 3676 -2470 1864 223 3 8 chr15 39549629 39550019 -46145735 + MLT1B LTR MaLR 3 390 0 1139 232 43 65 chr15 39550019 39551305 -46144449 + L1ME3 LINE L1 3676 5117 -1029 475 194 25 134 chr15 39551320 39551414 -46144340 - Charlie1a DNA MER1_type -2576 185 122 2054 123 0 0 chr15 39551414 39551730 -46144024 + AluSx SINE Alu 1 316 0 475 194 25 134 chr15 39551730 39551835 -46143919 - Charlie1a DNA MER1_type -2639 122 7 695 213 121 56 chr15 39551846 39552095 -46143659 + L1ME3 LINE L1 5807 6071 -91 21 36 0 0 chr15 39552129 39552157 -46143597 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 24 0 chr15 39552157 39552241 -46143513 - Charlie2 DNA MER1_type -335 2527 2442 249 284 54 0 chr15 39552479 39552553 -46143201 - L2 LINE L2 0 3272 3195 277 303 184 0 chr15 39553649 39553758 -46141996 + L2 LINE L2 3143 3271 -1 1405 193 12 72 chr15 39554283 39554405 -46141349 + AluJo SINE Alu 1 129 -183 2369 79 0 0 chr15 39554405 39554695 -46141059 - AluSg SINE Alu -20 290 1 1405 193 12 72 chr15 39554695 39554893 -46140861 + AluJo SINE Alu 129 302 -10 248 130 22 0 chr15 39554916 39554962 -46140792 + G-rich Low_complexity Low_complexity 4 50 0 272 274 85 9 chr15 39555175 39555281 -46140473 + MLT1L LTR MaLR 171 284 -331 321 155 0 0 chr15 39555289 39555347 -46140407 + GA-rich Low_complexity Low_complexity 1 58 0 539 298 37 28 chr15 39555414 39555632 -46140122 + MLT1L LTR MaLR 372 591 -24 27 0 0 0 chr15 39557356 39557383 -46138371 + GC_rich Low_complexity Low_complexity 1 27 0 302 284 103 73 chr15 39557442 39557646 -46138108 - L1M2 LINE L1 -5881 968 759 1065 304 38 56 chr15 39558239 39558742 -46137012 - L2 LINE L2 0 3313 2820 201 358 72 41 chr15 39558999 39559387 -46136367 + L2 LINE L2 2271 2670 -644 1914 126 3 48 chr15 39559501 39559811 -46135943 - AluJb SINE Alu -16 296 1 394 279 38 13 chr15 39559983 39560141 -46135613 - MLT1K LTR MaLR -6 582 421 647 130 30 10 chr15 39560141 39560241 -46135513 + AluSg/x SINE Alu 197 298 -14 369 269 31 31 chr15 39560314 39560444 -46135310 - MLT1K LTR MaLR -323 265 136 578 286 107 18 chr15 39561186 39561522 -46134232 + MLT1J2 LTR MaLR 65 395 -55 2259 120 3 0 chr15 39561584 39561893 -46133861 - AluSq SINE Alu -3 310 1 670 258 104 21 chr15 39562735 39562975 -46132779 - MLT1K LTR MaLR -109 479 220 1395 271 105 0 chr15 39563320 39563766 -46131988 - LTR33 LTR ERVL -28 493 1 235 104 0 62 chr15 39564624 39564672 -46131082 - L2 LINE L2 0 3272 3228 468 256 188 0 chr15 39564709 39564842 -46130912 - MER5A DNA MER1_type -1 188 31 2262 140 14 8 chr15 39565022 39565386 -46130368 - MER47A DNA MER2_type 0 366 1 922 242 43 3 chr15 39565398 39565678 -46130076 + L1MB7 LINE L1 5884 6173 -11 366 286 9 38 chr15 39565725 39565830 -46129924 - MIR SINE MIR -113 149 48 831 270 109 72 chr15 39566067 39566570 -46129184 - LTR67 LTR ERVL -11 546 25 383 281 47 53 chr15 39566629 39566693 -46129061 + MER5A DNA MER1_type 14 77 -112 2534 54 0 16 chr15 39566693 39567009 -46128745 + AluY SINE Alu 1 311 0 383 281 47 53 chr15 39567009 39567064 -46128690 + MER5A DNA MER1_type 77 134 -55 2559 111 3 14 chr15 39567064 39567432 -46128322 + THE1B LTR MaLR 1 364 0 383 281 47 53 chr15 39567432 39567482 -46128272 + MER5A DNA MER1_type 134 183 -6 838 98 55 31 chr15 39567562 39567725 -46128029 - MER53 DNA DNA 0 189 23 6369 93 7 10 chr15 39568190 39569237 -46126517 + L1PA10 LINE L1 5120 6163 -5 1746 163 27 7 chr15 39569389 39569684 -46126070 + AluJb SINE Alu 1 301 -11 2076 93 64 0 chr15 39570159 39570439 -46125315 - AluSx SINE Alu -14 298 1 1652 160 5 97 chr15 39570534 39570916 -46124838 - MER7A DNA MER2_type -1 345 1 982 193 0 0 chr15 39571028 39571199 -46124555 + AluJb SINE Alu 134 304 -8 1522 204 60 73 chr15 39571213 39571840 -46123914 + L1MC5 LINE L1 6805 7424 -533 1826 195 0 0 chr15 39571840 39572147 -46123607 + AluJo SINE Alu 1 307 -5 364 67 33 0 chr15 39572151 39572211 -46123543 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 789 227 80 33 chr15 39572211 39572576 -46123178 + L1MC5 LINE L1 7412 7793 -168 284 155 24 48 chr15 39572583 39572667 -46123087 + L1MC5 LINE L1 7835 7916 -45 255 275 39 51 chr15 39572674 39572852 -46122902 + L1ME4a LINE L1 5887 6062 -59 990 111 0 22 chr15 39573166 39573301 -46122453 + AluSx SINE Alu 1 132 -181 6147 40 8 0 chr15 39573301 39574096 -46121658 - L1PA5 LINE L1 -1620 4526 3726 7375 44 0 0 chr15 39574096 39575731 -46120023 + L1PA5 LINE L1 4515 6153 -1 1139 193 0 0 chr15 39575761 39575953 -46119801 + AluSx SINE Alu 119 310 0 259 265 80 31 chr15 39576649 39576811 -46118943 - L1M2 LINE L1 -743 5557 5388 1572 114 14 0 chr15 39578694 39578905 -46116849 + AluJo SINE Alu 84 297 -15 791 181 0 114 chr15 39579074 39579135 -46116619 - MER5A DNA MER1_type -3 186 120 2211 86 3 20 chr15 39579135 39579439 -46116315 + AluSc SINE Alu 1 299 -10 791 181 0 114 chr15 39579439 39579587 -46116167 - MER5A DNA MER1_type -69 120 1 1241 112 0 0 chr15 39579768 39579937 -46115817 - AluSq SINE Alu 0 313 145 300 268 70 14 chr15 39579937 39580079 -46115675 + HAL1 LINE L1 805 954 -1553 749 184 0 15 chr15 39580253 39580389 -46115365 + AluSq/x SINE Alu 1 134 -179 578 276 83 33 chr15 39580424 39580822 -46114932 + HAL1 LINE L1 1142 1559 -948 996 173 18 0 chr15 39580822 39580990 -46114764 - FAM SINE Alu -1 174 4 2054 128 23 7 chr15 39581114 39581418 -46114336 + AluSx SINE Alu 1 309 -3 442 264 24 24 chr15 39581573 39581698 -46114056 + L2 LINE L2 3188 3312 -1 1695 183 7 7 chr15 39581906 39582191 -46113563 - AluJo SINE Alu -16 296 12 1310 156 10 0 chr15 39582246 39582445 -46113309 - AluJo SINE Alu -107 205 5 2045 134 7 3 chr15 39582753 39583060 -46112694 + AluSx SINE Alu 1 308 -4 2067 140 0 3 chr15 39583069 39583361 -46112393 + AluJb SINE Alu 1 291 -21 384 233 12 0 chr15 39583369 39583455 -46112299 - HAL1 LINE L1 -2419 88 2 243 237 17 17 chr15 39583463 39583522 -46112232 - L2 LINE L2 0 3313 3255 1925 150 7 3 chr15 39584119 39584413 -46111341 - AluJb SINE Alu -17 295 1 1670 193 3 14 chr15 39584844 39585139 -46110615 + AluJb SINE Alu 2 293 -19 208 364 82 0 chr15 39585139 39585249 -46110505 + L2 LINE L2 3187 3305 -8 249 357 92 10 chr15 39585592 39585690 -46110064 - L2 LINE L2 -30 3242 3137 628 176 32 0 chr15 39585937 39586062 -46109692 + MSTD LTR MaLR 1 129 -267 799 176 33 7 chr15 39586085 39586238 -46109516 + MSTD LTR MaLR 240 396 0 2196 100 3 3 chr15 39586445 39586745 -46109009 + AluSx SINE Alu 1 300 -12 251 179 160 38 chr15 39586906 39587012 -46108742 - MLT1L LTR MaLR -331 284 166 736 161 213 14 chr15 39587340 39587551 -46108203 - MER2 DNA MER2_type -92 253 1 28 48 0 0 chr15 39588982 39589024 -46106730 + GC_rich Low_complexity Low_complexity 1 42 0 331 322 81 81 chr15 39589120 39589468 -46106286 - L1M2 LINE L1 -5729 1120 773 30 45 0 0 chr15 39589597 39589641 -46106113 + GC_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr15 39590080 39590107 -46105647 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr15 39590537 39590559 -46105195 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chr15 39591587 39591636 -46104118 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr15 39591672 39591696 -46104058 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr15 39591933 39591979 -46103775 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr15 39592950 39592982 -46102772 + AT_rich Low_complexity Low_complexity 1 32 0 1054 203 18 5 chr15 39594169 39594386 -46101368 - L1MD1 LINE L1 -14 6228 6009 2086 133 0 10 chr15 39594966 39595267 -46100487 + AluSx SINE Alu 1 298 -14 2093 120 0 3 chr15 39596084 39596375 -46099379 + AluSx SINE Alu 6 295 -17 845 257 10 5 chr15 39596748 39596954 -46098800 + MIR SINE MIR 32 238 -24 362 286 136 0 chr15 39597321 39597475 -46098279 - L1ME4a LINE L1 0 6121 5947 321 249 72 64 chr15 39597500 39597749 -46098005 - L1ME4a LINE L1 -225 5896 5646 587 294 41 5 chr15 39598112 39598309 -46097445 + MIR SINE MIR 1 204 -58 282 303 0 0 chr15 39598421 39598497 -46097257 - MIR SINE MIR -1 261 186 438 225 70 2 chr15 39600814 39601083 -46094671 + MER46C DNA MER2_type 2 334 -4 189 0 0 0 chr15 39602611 39602632 -46093122 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1669 145 72 4 chr15 39602636 39602898 -46092856 - AluSg SINE Alu -30 280 1 394 254 45 27 chr15 39603536 39603698 -46092056 + MIR SINE MIR 20 184 -62 34 89 0 0 chr15 39603917 39604007 -46091747 + AT_rich Low_complexity Low_complexity 1 90 0 934 204 0 0 chr15 39605282 39605463 -46090291 - MLT1B LTR MaLR 0 390 210 6316 150 22 48 chr15 39605530 39607413 -46088341 - L1PB1 LINE L1 -1 6150 4276 494 127 25 0 chr15 39607413 39607492 -46088262 - AluSg/x SINE Alu -17 292 212 6316 150 22 48 chr15 39607492 39608070 -46087684 - L1PB1 LINE L1 -1875 4276 3684 243 125 0 0 chr15 39608070 39608110 -46087644 + (T)n Simple_repeat Simple_repeat 1 40 0 853 187 0 145 chr15 39608120 39608209 -46087545 - L1PB1 LINE L1 -2394 3752 3652 2090 120 30 0 chr15 39608209 39608508 -46087246 - AluSc SINE Alu -1 308 1 853 187 0 145 chr15 39608508 39608750 -46087004 - L1PB1 LINE L1 -2494 3652 3469 592 197 15 36 chr15 39608757 39608894 -46086860 - MLT1B LTR MaLR -240 134 1 203 333 44 11 chr15 39609299 39609389 -46086365 + L3 LINE CR1 1251 1343 -234 216 0 0 0 chr15 39610017 39610041 -46085713 + (T)n Simple_repeat Simple_repeat 1 24 0 974 156 0 6 chr15 39610492 39610671 -46085083 + CT-rich Low_complexity Low_complexity 3 180 0 503 228 18 12 chr15 39610633 39610804 -46084950 + C-rich Low_complexity Low_complexity 5 176 0 * 1462 201 24 41 chr15 39610816 39611110 -46084644 - AluJo SINE Alu -23 289 1 24 0 0 0 chr15 39611110 39611134 -46084620 + AT_rich Low_complexity Low_complexity 1 24 0 1892 156 7 7 chr15 39611134 39611423 -46084331 + AluJb SINE Alu 1 289 -23 2212 103 3 7 chr15 39611423 39611723 -46084031 - AluSq SINE Alu -14 299 1 386 287 108 30 chr15 39613521 39613688 -46082066 - MIR SINE MIR -30 232 53 417 263 25 69 chr15 39613889 39614049 -46081705 - MER5B DNA MER1_type -25 153 1 868 224 80 12 chr15 39614896 39615224 -46080530 - L1MEc LINE L1 -1488 4727 4373 252 301 35 7 chr15 39615220 39615363 -46080391 - L1MEc LINE L1 -2770 3445 3299 * 2909 293 77 29 chr15 39615358 39615745 -46080009 - L1MEc LINE L1 -4579 1817 1450 1367 236 37 55 chr15 39615745 39616148 -46079606 + MSTD LTR MaLR 1 396 0 2909 293 77 29 chr15 39616148 39616848 -46078906 - L1MEc LINE L1 -4946 1450 785 1979 147 10 0 chr15 39616848 39617147 -46078607 - AluSx SINE Alu -10 302 1 2909 293 77 29 chr15 39617147 39617762 -46077992 - L1MEc LINE L1 -5611 785 32 180 326 54 0 chr15 39618073 39618165 -46077589 + MIR SINE MIR 110 206 -56 971 123 0 0 chr15 39618171 39618309 -46077445 - FRAM SINE Alu -12 164 27 21 57 0 0 chr15 39619379 39619414 -46076340 + AT_rich Low_complexity Low_complexity 1 35 0 319 358 75 0 chr15 39619684 39619818 -46075936 - L2 LINE L2 -7 3265 3122 7945 232 72 59 chr15 39620099 39620269 -46075485 - L1ME1 LINE L1 -92 6143 5977 2213 105 0 7 chr15 39620269 39620573 -46075181 - AluSx SINE Alu -8 304 3 7945 232 72 59 chr15 39620573 39620795 -46074959 - L1ME1 LINE L1 -258 5977 5759 2312 110 3 0 chr15 39620795 39621105 -46074649 - AluSp SINE Alu -2 311 1 7945 232 72 59 chr15 39621105 39621710 -46074044 - L1ME1 LINE L1 -476 5759 5163 1641 167 28 21 chr15 39621710 39621997 -46073757 - AluJb SINE Alu -23 289 1 7945 232 72 59 chr15 39621997 39624315 -46071439 - L1ME1 LINE L1 -1072 5163 2876 6679 62 24 1 chr15 39624315 39625614 -46070140 + L1PA6 LINE L1 4837 6154 0 7945 232 72 59 chr15 39625614 39626954 -46068800 - L1ME1 LINE L1 -3359 2876 1554 1214 218 156 34 chr15 39626954 39627307 -46068447 + MSTD LTR MaLR 1 396 0 7945 232 72 59 chr15 39627307 39628512 -46067242 - L1ME1 LINE L1 -4681 1554 37 661 206 97 7 chr15 39628517 39628672 -46067082 - MER3 DNA MER1_type -85 124 3 186 43 0 0 chr15 39628706 39628729 -46067025 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chr15 39628728 39628765 -46066989 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 146 0 66 chr15 39628782 39628919 -46066835 + FLAM_C SINE Alu 4 131 -2 320 207 61 37 chr15 39629162 39629244 -46066510 + L2 LINE L2 3218 3301 -12 479 79 53 0 chr15 39630021 39630097 -46065657 + MADE1 DNA Mariner 1 80 0 2183 127 0 0 chr15 39630480 39630779 -46064975 - AluSx SINE Alu -13 299 1 2180 80 49 0 chr15 39630907 39631195 -46064559 + AluSq SINE Alu 1 302 -11 468 188 59 155 chr15 39631683 39631910 -46063844 - MER112 DNA MER1_type -13 247 49 2402 27 41 10 chr15 39631910 39632205 -46063549 + AluY SINE Alu 1 304 -7 468 188 59 155 chr15 39632205 39632248 -46063506 - MER112 DNA MER1_type -211 49 3 270 265 12 36 chr15 39632688 39632771 -46062983 + MIR3 SINE MIR 99 179 -29 198 0 0 0 chr15 39633077 39633099 -46062655 + (T)n Simple_repeat Simple_repeat 1 22 0 638 265 88 0 chr15 39635024 39635205 -46060549 - MER105 DNA DNA -4 200 4 279 62 125 0 chr15 39636263 39636311 -46059443 + MADE1 DNA Mariner 1 54 -26 442 19 0 0 chr15 39636386 39636439 -46059315 + MADE1 DNA Mariner 28 80 0 2049 110 4 0 chr15 39636890 39637171 -46058583 + AluSx SINE Alu 1 282 -30 1992 121 0 4 chr15 39637999 39638305 -46057449 - AluSx SINE Alu 0 307 3 753 199 115 0 chr15 39638415 39638571 -46057183 - FAM SINE Alu -1 174 1 547 236 341 56 chr15 39638660 39638724 -46057030 - L2 LINE L2 -531 2783 2738 4143 73 42 2 chr15 39638724 39638911 -46056843 - MER4A LTR ERV1 -1 599 421 180 0 0 0 chr15 39638911 39638931 -46056823 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 4143 73 42 2 chr15 39638931 39639319 -46056435 - MER4A LTR ERV1 -179 421 1 547 236 341 56 chr15 39639319 39639586 -46056168 - L2 LINE L2 -576 2738 2548 853 229 0 0 chr15 39639586 39639752 -46056002 - FRAM SINE Alu 0 166 1 547 236 341 56 chr15 39639752 39639990 -46055764 - L2 LINE L2 -766 2548 2050 2402 92 0 0 chr15 39640250 39640553 -46055201 + AluSg SINE Alu 1 303 -7 1739 159 23 17 chr15 39640818 39641119 -46054635 + AluJo SINE Alu 1 303 -9 1877 136 9 28 chr15 39641192 39641509 -46054245 + AluSx SINE Alu 1 311 -1 750 93 0 0 chr15 39641552 39641660 -46054094 - MER4B LTR ERV1 -499 111 4 662 157 71 79 chr15 39641662 39641802 -46053952 - Tigger7 DNA MER2_type -503 202 64 376 232 0 0 chr15 39641806 39641875 -46053879 + Tigger7 DNA MER2_type 2 70 -269 1205 140 14 79 chr15 39641875 39642154 -46053600 + L1MB8 LINE L1 5918 6178 0 3963 220 96 46 chr15 39642225 39644517 -46051237 + L1MC4 LINE L1 5520 8041 -1 327 332 47 47 chr15 39644633 39644844 -46050910 - MIR SINE MIR -32 230 20 197 33 33 0 chr15 39645684 39645714 -46050040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 221 31 91 chr15 39645829 39646272 -46049482 + L1MC5 LINE L1 6692 7065 -896 2097 83 0 24 chr15 39646272 39646560 -46049194 - AluY SINE Alu -2 309 29 2075 221 31 91 chr15 39646560 39646932 -46048822 + L1MC5 LINE L1 7065 7458 -503 904 128 70 13 chr15 39646972 39647128 -46048626 - MER3 DNA MER1_type -86 123 6 538 217 26 9 chr15 39647132 39647247 -46048507 - MLT1B LTR MaLR -3 387 271 1411 174 23 12 chr15 39647302 39647561 -46048193 + AluJo SINE Alu 1 262 -50 228 67 0 0 chr15 39647597 39647627 -46048127 + (TG)n Simple_repeat Simple_repeat 1 30 0 811 245 27 5 chr15 39647858 39648042 -46047712 - MER5A DNA MER1_type -1 188 1 25 31 0 0 chr15 39648045 39648077 -46047677 + AT_rich Low_complexity Low_complexity 1 32 0 369 109 178 59 chr15 39648947 39649048 -46046706 + MER3 DNA MER1_type 96 208 -1 22 0 0 0 chr15 39649428 39649450 -46046304 + AT_rich Low_complexity Low_complexity 1 22 0 761 178 29 58 chr15 39650128 39650302 -46045452 + AluJo SINE Alu 1 169 -143 912 225 83 77 chr15 39650319 39650644 -46045110 + MLT1A1 LTR MaLR 39 365 0 910 240 47 78 chr15 39651227 39651636 -46044118 - MSTD LTR MaLR 0 396 1 2189 151 91 7 chr15 39651644 39652049 -46043705 - Tigger2 DNA MER2_type 0 2718 2280 412 131 33 0 chr15 39652057 39652118 -46043636 - Tigger2 DNA MER2_type -2655 63 1 318 292 42 10 chr15 39652156 39652252 -46043502 - L2 LINE L2 0 3272 3174 231 114 0 0 chr15 39653365 39653400 -46042354 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 348 175 175 0 chr15 39653680 39653760 -46041994 - MER46C DNA MER2_type -221 117 24 1813 168 7 10 chr15 39653770 39654080 -46041674 + AluJo SINE Alu 1 309 -3 396 0 0 0 chr15 39654301 39654345 -46041409 + (TG)n Simple_repeat Simple_repeat 2 45 0 2173 72 0 36 chr15 39657160 39657466 -46038288 - AluSq SINE Alu -18 295 1 1564 145 105 34 chr15 39658232 39658556 -46037198 - MER7A DNA MER2_type -1 345 1 244 194 139 69 chr15 39659077 39659221 -46036533 - L1ME4a LINE L1 -61 6060 5907 499 144 21 10 chr15 39659319 39659416 -46036338 + MER58 DNA MER1_type 2322 2419 -1 330 67 0 0 chr15 39660280 39660325 -46035429 + (TG)n Simple_repeat Simple_repeat 1 45 0 1810 177 0 10 chr15 39660837 39661148 -46034606 - AluJb SINE Alu -4 308 1 1394 210 3 53 chr15 39662026 39662345 -46033409 + AluJb SINE Alu 2 304 -8 2714 218 70 86 chr15 39663718 39665050 -46030704 + L1MDb LINE L1 782 2048 -4358 258 270 22 25 chr15 39665076 39665209 -46030545 + L1MDb LINE L1 2135 2273 -4133 5103 182 29 24 chr15 39665211 39666346 -46029408 - L1PA16 LINE L1 -1363 4783 3643 * 5285 166 36 5 chr15 39666331 39667689 -46028065 + L1PA16 LINE L1 4766 6159 -7 1626 217 93 29 chr15 39667683 39668229 -46027525 + L1MDb LINE L1 2285 2875 -3531 * 2155 130 0 3 chr15 39668229 39668530 -46027224 + AluSx SINE Alu 3 302 -10 1626 217 93 29 chr15 39668530 39668631 -46027123 + L1MDb LINE L1 2875 2968 -3438 1266 243 30 3 chr15 39668635 39668968 -46026786 + L1MDb LINE L1 2788 3129 -3277 2505 58 0 0 chr15 39668969 39669262 -46026492 + AluY SINE Alu 1 293 -18 709 249 65 19 chr15 39669310 39669635 -46026119 + L1MDb LINE L1 3397 3736 -2670 1943 146 0 0 chr15 39669644 39669938 -46025816 + AluSx SINE Alu 1 294 -18 549 127 0 0 chr15 39669974 39670053 -46025701 - AluJ/FLAM SINE Alu -233 79 1 746 219 7 7 chr15 39670240 39670391 -46025363 - FRAM SINE Alu -15 151 1 22 35 0 0 chr15 39670401 39670430 -46025324 + AT_rich Low_complexity Low_complexity 1 29 0 935 209 125 6 chr15 39670440 39670751 -46025003 + L1M4 LINE L1 2871 3218 -2928 34 0 0 0 chr15 39671031 39671065 -46024689 + AT_rich Low_complexity Low_complexity 1 34 0 2028 101 7 11 chr15 39671065 39671341 -46024413 - AluSx SINE Alu -11 301 27 323 250 254 11 chr15 39671428 39671708 -46024046 - L1MC4 LINE L1 -197 7845 7498 2693 204 88 3 chr15 39673235 39673837 -46021917 + MER82 DNA MER2_type 1 653 0 221 341 8 16 chr15 39674247 39674278 -46021476 - L3 LINE CR1 -736 841 811 1955 120 3 58 chr15 39674278 39674457 -46021297 - AluSq SINE Alu -5 308 154 2335 89 0 3 chr15 39674457 39674761 -46020993 - AluY SINE Alu -8 303 1 1955 120 3 58 chr15 39674761 39674907 -46020847 - AluSq SINE Alu -159 154 1 221 341 8 16 chr15 39674907 39674998 -46020756 - L3 LINE CR1 -766 811 720 288 204 150 18 chr15 39675259 39675372 -46020382 + MER103 DNA DNA 5 132 -34 284 330 20 0 chr15 39675492 39675592 -46020162 - L3 LINE CR1 -225 1352 1251 1839 164 0 10 chr15 39675616 39675920 -46019834 - AluJo SINE Alu -9 303 3 1612 93 0 0 chr15 39676364 39676569 -46019185 - AluSq SINE Alu -20 293 89 571 115 0 0 chr15 39676569 39676647 -46019107 + AluS SINE Alu 7 84 -228 1771 166 7 3 chr15 39676687 39676971 -46018783 + AluSx SINE Alu 1 285 -27 566 225 42 0 chr15 39677575 39677695 -46018059 + MIR3 SINE MIR 61 185 -23 1002 108 0 32 chr15 39677811 39677996 -46017758 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 234 105 0 0 chr15 39677998 39678036 -46017718 + (TC)n Simple_repeat Simple_repeat 1 38 0 1345 168 7 69 chr15 39678036 39678327 -46017427 - AluJo SINE Alu -39 273 1 766 186 145 0 chr15 39678428 39678573 -46017181 - FRAM SINE Alu -12 164 1 1613 189 3 10 chr15 39679162 39679463 -46016291 - AluJb SINE Alu -13 299 1 465 143 0 0 chr15 39680338 39680408 -46015346 + AluJ/FLAM SINE Alu 21 90 -222 25 51 0 0 chr15 39680471 39680510 -46015244 + AT_rich Low_complexity Low_complexity 1 39 0 2116 166 47 10 chr15 39681195 39681604 -46014150 + MSTB LTR MaLR 1 424 -2 687 269 48 0 chr15 39682565 39682732 -46013022 - LTR16A LTR ERVL -5 445 271 281 200 0 0 chr15 39682767 39682812 -46012942 - LTR16A LTR ERVL -265 185 141 347 203 0 29 chr15 39683241 39683310 -46012444 - L2 LINE L2 -1 3312 3246 1837 165 0 33 chr15 39683370 39683673 -46012081 - AluSx SINE Alu -19 293 1 695 216 32 16 chr15 39683814 39683999 -46011755 - Charlie2 DNA MER1_type -64 2798 2611 3058 246 72 32 chr15 39684029 39684916 -46010838 + HERVL40 LTR ERVL 3517 4446 -1084 465 19 0 0 chr15 39684916 39684970 -46010784 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3058 246 72 32 chr15 39684970 39685030 -46010724 + HERVL40 LTR ERVL 4446 4502 -1028 1811 168 7 0 chr15 39685062 39685342 -46010412 + AluSx SINE Alu 3 284 -28 232 183 0 67 chr15 39685602 39685662 -46010092 + LTR40a LTR ERVL 457 512 -7 256 309 33 88 chr15 39685731 39685912 -46009842 + HERVL40 LTR ERVL 2502 2672 -365 519 363 7 29 chr15 39686072 39686485 -46009269 + MER89-int LTR ERV1 6081 6484 -317 * 1219 256 10 3 chr15 39686377 39686723 -46009031 + HERVL40 LTR ERVL 2785 5530 0 2285 214 42 8 chr15 39686723 39687218 -46008536 + LTR40a LTR ERVL 1 512 -7 853 219 42 14 chr15 39687381 39687596 -46008158 + MER58A DNA MER1_type 4 224 0 192 77 0 0 chr15 39687770 39687796 -46007958 + (T)n Simple_repeat Simple_repeat 1 26 0 2265 91 106 53 chr15 39688150 39688506 -46007248 - LTR56 LTR ERV1 0 445 62 1547 170 78 0 chr15 39688506 39688789 -46006965 - AluJb SINE Alu -3 309 5 2265 91 106 53 chr15 39688789 39688849 -46006905 - LTR56 LTR ERV1 -383 62 7 2220 185 56 116 chr15 39689380 39690154 -46005600 - LTR8A LTR ERV1 0 727 1 546 68 0 0 chr15 39691426 39691499 -46004255 + Alu SINE Alu 4 76 -235 1165 179 51 30 chr15 39691742 39691976 -46003778 - MER8 DNA MER2_type 0 239 1 6070 53 1 8 chr15 39692095 39692107 -46003647 - L1PA6 LINE L1 -3 6151 6140 243 0 0 0 chr15 39692107 39692134 -46003620 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6070 53 1 8 chr15 39692134 39692898 -46002856 - L1PA6 LINE L1 -14 6140 5380 333 296 72 8 chr15 39693309 39693434 -46002320 - MIR SINE MIR -13 249 117 25 0 0 0 chr15 39693615 39693640 -46002114 + AT_rich Low_complexity Low_complexity 1 25 0 1927 184 18 6 chr15 39693837 39694163 -46001591 - MER1B DNA MER1_type -9 330 1 1936 145 30 0 chr15 39694271 39694568 -46001186 - AluSx SINE Alu -6 306 1 1880 131 3 20 chr15 39695136 39695434 -46000320 - AluSx SINE Alu -19 293 1 710 298 144 26 chr15 39695810 39696135 -45999619 + L3 LINE CR1 936 1344 -233 792 200 122 34 chr15 39696135 39696340 -45999414 - MER58A DNA MER1_type 0 224 2 710 298 144 26 chr15 39696340 39696521 -45999233 + L3 LINE CR1 1344 1502 -75 1391 211 53 30 chr15 39696809 39697146 -45998608 + MER2 DNA MER2_type 1 345 0 2151 239 114 42 chr15 39697146 39697728 -45998026 - L1ME2 LINE L1 -23 6141 5602 1997 133 42 36 chr15 39697728 39698016 -45997738 + THE1B LTR MaLR 1 293 -71 2045 121 24 13 chr15 39698016 39698314 -45997440 - AluSx SINE Alu -11 301 1 1997 133 42 36 chr15 39698314 39698385 -45997369 + THE1B LTR MaLR 293 362 -2 2151 239 114 42 chr15 39698385 39698855 -45996899 - L1ME2 LINE L1 -562 5602 5167 1837 139 10 7 chr15 39698855 39699149 -45996605 - AluSx SINE Alu -14 298 4 2151 239 114 42 chr15 39699149 39699534 -45996220 - L1ME2 LINE L1 -997 5167 4583 1653 230 49 37 chr15 39699646 39700181 -45995573 - L1ME1 LINE L1 -18 6148 5608 210 143 0 0 chr15 39700198 39700233 -45995521 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 195 129 0 0 chr15 39700275 39700306 -45995448 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1316 181 69 43 chr15 39700308 39700585 -45995169 - AluJo SINE Alu -28 284 1 23 0 0 0 chr15 39700585 39700608 -45995146 + AT_rich Low_complexity Low_complexity 1 23 0 1176 222 72 71 chr15 39702322 39702494 -45993260 + L1MDb LINE L1 782 952 -5454 1692 145 0 56 chr15 39702494 39702798 -45992956 - AluJb SINE Alu -25 287 1 1176 222 72 71 chr15 39702798 39703370 -45992384 + L1MDb LINE L1 952 1456 -4950 21 0 0 0 chr15 39703397 39703418 -45992336 + AT_rich Low_complexity Low_complexity 1 21 0 320 340 60 32 chr15 39704705 39704890 -45990864 - MIR SINE MIR -71 191 2 331 279 95 51 chr15 39705117 39705275 -45990479 - MIR SINE MIR -46 216 52 1818 159 3 17 chr15 39705325 39705621 -45990133 - AluJo SINE Alu -20 292 1 1358 168 171 17 chr15 39705854 39706146 -45989608 + MER1B DNA MER1_type 1 337 0 1769 169 81 35 chr15 39706406 39706852 -45988902 - L1M4 LINE L1 -523 5661 5184 1906 104 31 4 chr15 39707223 39707482 -45988272 + AluSx SINE Alu 4 269 -43 246 32 0 0 chr15 39707483 39707514 -45988240 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1479 171 62 4 chr15 39708214 39708489 -45987265 + AluJo SINE Alu 4 294 -18 219 69 0 0 chr15 39708508 39708537 -45987217 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr15 39712073 39712094 -45983660 + AT_rich Low_complexity Low_complexity 1 21 0 647 78 10 29 chr15 39712161 39712264 -45983490 - AluSp/q SINE Alu -3 310 210 1526 203 4 4 chr15 39712487 39712768 -45982986 - AluJo SINE Alu -31 281 1 3586 161 44 87 chr15 39712816 39713677 -45982077 - L1MB1 LINE L1 0 6168 5345 1253 89 13 0 chr15 39913780 39913937 -45781817 + AluSq SINE Alu 89 247 -66 406 256 54 18 chr15 39913939 39914107 -45781647 - MER104 DNA MER2_type -4 176 3 243 286 18 62 chr15 39914269 39914381 -45781373 - MIR SINE MIR -76 186 80 336 282 67 67 chr15 39915791 39915829 -45779925 + MIR SINE MIR 66 103 -159 1695 165 16 30 chr15 39915829 39916132 -45779622 - AluJo SINE Alu -5 307 9 336 282 67 67 chr15 39916132 39916242 -45779512 + MIR SINE MIR 102 214 -48 205 375 39 10 chr15 39916301 39916405 -45779349 + MIR SINE MIR 108 214 -48 636 153 81 18 chr15 39918088 39918199 -45777555 - FLAM_C SINE Alu -15 118 1 243 146 0 0 chr15 39918850 39918891 -45776863 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 149 0 12 chr15 39919104 39919272 -45776482 + FRAM SINE Alu 1 165 -11 1924 124 50 14 chr15 39919538 39919821 -45775933 + AluSx SINE Alu 1 293 -19 225 225 14 42 chr15 39920723 39920794 -45774960 + MER46A DNA MER2_type 101 169 -67 675 301 27 11 chr15 39920804 39920990 -45774764 - MIR SINE MIR -29 233 45 225 0 0 0 chr15 39921387 39921412 -45774342 + (TAAAG)n Simple_repeat Simple_repeat 1 25 0 210 22 0 87 chr15 39922459 39922505 -45773249 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 197 222 0 37 chr15 39923001 39923055 -45772699 + MIR SINE MIR 211 262 0 322 308 60 23 chr15 39923195 39923328 -45772426 + MIR SINE MIR 47 184 -78 1778 190 85 3 chr15 39923595 39923958 -45771796 - MLT2C1 LTR ERVL 0 397 5 2143 110 0 7 chr15 39924359 39924658 -45771096 + AluSg SINE Alu 1 297 -13 388 54 89 0 chr15 39925412 39925468 -45770286 - L1PA7 LINE L1 0 6154 6094 214 268 41 62 chr15 39926952 39927049 -45768705 - MIR SINE MIR -81 181 87 305 281 85 89 chr15 39927821 39928102 -45767652 - L1M2 LINE L1 -5716 1133 854 1819 149 35 0 chr15 39928529 39928818 -45766936 + AluJo SINE Alu 1 299 -13 2204 110 0 0 chr15 39929237 39929554 -45766200 + AluSx SINE Alu 2 318 0 209 306 116 74 chr15 39929779 39929900 -45765854 + L2 LINE L2 3147 3272 0 2072 122 11 45 chr15 39932553 39932929 -45762825 - L1MA2 LINE L1 0 6304 5942 393 274 103 0 chr15 39933022 39933139 -45762615 + MLT1J LTR MaLR 92 220 -291 2211 123 3 0 chr15 39933640 39933950 -45761804 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr15 39933987 39934008 -45761746 + AT_rich Low_complexity Low_complexity 1 21 0 2133 170 52 44 chr15 39934248 39934743 -45761011 - L1MB8 LINE L1 0 6178 5680 1955 112 54 0 chr15 39934788 39935064 -45760690 + AluSx SINE Alu 6 296 -16 454 300 158 34 chr15 39935067 39935596 -45760158 - L1 LINE L1 -1527 4619 4026 2050 135 3 7 chr15 39935679 39935975 -45759779 + AluSx SINE Alu 1 295 -17 2495 63 0 0 chr15 39935975 39936274 -45759480 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 39936274 39936316 -45759438 + AT_rich Low_complexity Low_complexity 1 42 0 1268 133 15 15 chr15 39936496 39936699 -45759055 - THE1B LTR MaLR -161 203 1 1621 181 64 39 chr15 39936952 39937145 -45758609 - MLT1A2 LTR MaLR -5 369 161 2088 104 30 3 chr15 39937145 39937443 -45758311 - AluSc SINE Alu -3 306 1 1621 181 64 39 chr15 39937443 39937609 -45758145 - MLT1A2 LTR MaLR -213 161 1 665 136 0 18 chr15 39938741 39938851 -45756903 + FLAM_A SINE Alu 30 137 -5 2492 76 0 0 chr15 39938881 39939185 -45756569 + AluSc SINE Alu 1 304 -5 213 132 0 0 chr15 39940789 39940827 -45754927 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2260 105 3 13 chr15 39940827 39941142 -45754612 - AluSx SINE Alu 0 312 1 468 359 47 35 chr15 39941146 39941652 -45754102 + L2 LINE L2 2044 2558 -756 3747 127 19 11 chr15 39941652 39942220 -45753534 - L1PA16 LINE L1 0 6166 5594 468 359 47 35 chr15 39942220 39942251 -45753503 + L2 LINE L2 2558 2587 -727 231 256 45 126 chr15 39942433 39942656 -45753098 + L2 LINE L2 2886 3090 -182 199 137 59 78 chr15 39942833 39942884 -45752870 - MIR SINE MIR -2 260 211 1559 154 12 15 chr15 39942976 39943235 -45752519 - AluJo SINE Alu -2 310 53 2325 86 0 20 chr15 39943248 39943550 -45752204 - AluSg SINE Alu -12 298 3 2197 135 0 6 chr15 39943561 39943873 -45751881 - AluSx SINE Alu -2 310 1 1494 187 39 16 chr15 39943874 39944184 -45751570 - L1MB7 LINE L1 -8 6176 5860 570 193 0 20 chr15 39944187 39944337 -45751417 + CT-rich Low_complexity Low_complexity 4 150 0 920 175 7 26 chr15 39944345 39944499 -45751255 - FRAM SINE Alu -15 151 1 844 207 32 65 chr15 39944502 39944748 -45751006 - L1MD1 LINE L1 -369 5873 5636 1515 250 170 39 chr15 39944799 39945516 -45750238 + L1M4 LINE L1 65 875 -5667 1033 154 6 34 chr15 39945561 39945689 -45750065 + MER2 DNA MER2_type 3 126 -219 1781 185 3 10 chr15 39945689 39945991 -45749763 - AluJb SINE Alu -12 300 1 1033 154 6 34 chr15 39945991 39946033 -45749721 + MER2 DNA MER2_type 126 168 -177 2120 150 7 78 chr15 39946033 39946298 -45749456 + Tigger2 DNA MER2_type 1 225 -2493 1822 108 10 61 chr15 39946298 39946593 -45749161 + AluSx SINE Alu 11 290 -22 2120 150 7 78 chr15 39946593 39946760 -45748994 + Tigger2 DNA MER2_type 225 402 -2316 5718 267 37 47 chr15 39946763 39947746 -45748008 + L1M4 LINE L1 2396 3387 -3257 2431 75 0 0 chr15 39947746 39948038 -45747716 - AluY SINE Alu -19 292 1 5718 267 37 47 chr15 39948038 39948842 -45746912 + L1M4 LINE L1 3387 4197 -2447 189 0 0 0 chr15 39948842 39948863 -45746891 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5718 267 37 47 chr15 39948863 39949267 -45746487 + L1M4 LINE L1 4197 4567 -2077 2143 97 28 7 chr15 39949267 39949556 -45746198 + AluSg1 SINE Alu 5 299 -10 5718 267 37 47 chr15 39949556 39949655 -45746099 + L1M4 LINE L1 4567 4665 -1979 309 290 21 11 chr15 39949715 39949808 -45745946 + MIR SINE MIR 58 151 -57 202 331 130 43 chr15 39951161 39951415 -45744339 - L2 LINE L2 -131 3141 2866 331 308 21 56 chr15 39951458 39951601 -45744153 + L2 LINE L2 3132 3269 -3 190 246 123 0 chr15 39952388 39952445 -45743309 + MIR SINE MIR 117 180 -82 3068 167 22 13 chr15 39952498 39952994 -45742760 - L1MB3 LINE L1 -5 6178 5675 2352 110 0 0 chr15 39952994 39953304 -45742450 - AluSg SINE Alu 0 310 1 3068 167 22 13 chr15 39953304 39953352 -45742402 - L1MB3 LINE L1 -508 5675 5629 625 331 70 7 chr15 39954117 39954419 -45741335 - L3 LINE CR1 -275 1302 982 2307 144 59 30 chr15 39954437 39954954 -45740800 + MLT2A2 LTR ERVL 1 554 0 2170 119 7 0 chr15 39955090 39955392 -45740362 - AluSq SINE Alu -9 304 1 272 192 80 113 chr15 39955477 39955628 -45740126 - MIR SINE MIR 0 262 117 350 362 172 13 chr15 39955699 39956229 -45739525 - L3 LINE CR1 -889 688 75 2486 69 0 10 chr15 39956548 39956852 -45738902 - AluY SINE Alu -2 309 9 333 299 37 0 chr15 39957694 39957801 -45737953 + MIR3 SINE MIR 53 163 -45 466 259 30 44 chr15 39957961 39958096 -45737658 - MIR SINE MIR -121 141 9 430 296 175 5 chr15 39958144 39958333 -45737421 - MIR SINE MIR -16 246 26 210 91 0 0 chr15 39959293 39959326 -45736428 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr15 39961362 39961383 -45734371 + (T)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr15 39962956 39963003 -45732751 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 311 283 30 10 chr15 39963354 39963453 -45732301 - MER5B DNA MER1_type -6 172 72 266 269 179 37 chr15 39963547 39963681 -45732073 + MIR SINE MIR 2 154 -108 1682 171 20 7 chr15 39964032 39964324 -45731430 - AluJo SINE Alu -11 301 6 264 252 136 4 chr15 39966252 39966380 -45729374 - MIR3 SINE MIR -28 180 29 2099 129 0 10 chr15 39966457 39966768 -45728986 + AluSg SINE Alu 1 308 -2 30 27 0 0 chr15 39967268 39967305 -45728449 + AT_rich Low_complexity Low_complexity 1 37 0 379 325 136 18 chr15 39967594 39967985 -45727769 + L2 LINE L2 1860 2296 -1018 334 295 72 30 chr15 39967987 39968153 -45727601 + L2 LINE L2 2467 2639 -675 319 350 58 25 chr15 39968165 39968408 -45727346 + L2 LINE L2 2288 2538 -776 239 280 68 68 chr15 39968445 39968563 -45727191 + L2 LINE L2 3141 3258 -14 230 125 0 21 chr15 39968588 39968636 -45727118 - LTR66 LTR ERVL -159 451 405 229 326 21 0 chr15 39968636 39968731 -45727023 + (CATATA)n Simple_repeat Simple_repeat 1 97 0 2498 188 47 26 chr15 39969511 39969940 -45725814 + MLT1D LTR MaLR 1 444 -61 2441 53 3 0 chr15 39969940 39970243 -45725511 + AluY SINE Alu 1 304 0 2498 188 47 26 chr15 39970243 39970307 -45725447 + MLT1D LTR MaLR 444 505 0 600 281 46 40 chr15 39970440 39970691 -45725063 - MIR SINE MIR 0 262 13 395 235 70 0 chr15 39970778 39970893 -45724861 + MLT1D LTR MaLR 1 123 -382 182 306 0 0 chr15 39971159 39971195 -45724559 + L2 LINE L2 3147 3182 -90 230 361 120 0 chr15 39972857 39972990 -45722764 - MIR SINE MIR -62 200 52 790 222 57 0 chr15 39973156 39973350 -45722404 + MER3 DNA MER1_type 1 205 -4 251 397 33 0 chr15 39973367 39973488 -45722266 - L3 LINE CR1 -20 1557 1433 189 337 76 11 chr15 39974273 39974365 -45721389 + L3 LINE CR1 444 541 -1036 339 289 0 33 chr15 39975768 39975858 -45719896 + MIR SINE MIR 15 101 -161 8982 209 73 30 chr15 39976545 39980240 -45715514 + L1MD1 LINE L1 2407 6242 0 21 0 0 0 chr15 39980240 39980261 -45715493 + AT_rich Low_complexity Low_complexity 1 21 0 402 266 112 18 chr15 39981959 39982128 -45713626 - MIR3 SINE MIR -1 207 23 973 104 11 27 chr15 39982403 39982516 -45713238 + (TTTC)n Simple_repeat Simple_repeat 1 291 0 973 104 11 27 chr15 39982516 39982699 -45713055 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr15 39982912 39982935 -45712819 + AT_rich Low_complexity Low_complexity 1 23 0 218 245 38 19 chr15 39982935 39982988 -45712766 + MER5B DNA MER1_type 54 107 -71 650 217 130 0 chr15 39982998 39983157 -45712597 + MER5A DNA MER1_type 1 183 -6 27 0 0 0 chr15 39983390 39983417 -45712337 + AT_rich Low_complexity Low_complexity 1 27 0 1842 210 81 78 chr15 39985009 39985550 -45710204 + LTR48B LTR ERV1 1 546 -98 2197 147 132 8 chr15 39985550 39985930 -45709824 + MSTA LTR MaLR 2 428 0 1842 210 81 78 chr15 39985930 39986030 -45709724 + LTR48B LTR ERV1 546 644 0 680 237 96 0 chr15 39986030 39986207 -45709547 - L1ME3A LINE L1 -59 6111 5918 239 0 32 0 chr15 39987015 39987046 -45708708 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr15 39987064 39987093 -45708661 + AT_rich Low_complexity Low_complexity 1 29 0 1677 174 25 11 chr15 39987093 39987375 -45708379 - AluJb SINE Alu -26 286 1 2285 102 0 0 chr15 39988446 39988740 -45707014 + AluSq SINE Alu 1 294 -19 924 102 8 0 chr15 39989519 39989663 -45706091 - FLAM_C SINE Alu 0 145 1 233 325 94 17 chr15 39989848 39989965 -45705789 + L2 LINE L2 2921 3046 -226 2209 101 16 10 chr15 39990069 39990375 -45705379 - AluSx SINE Alu -4 308 1 22 35 0 0 chr15 39990405 39990434 -45705320 + AT_rich Low_complexity Low_complexity 1 29 0 2106 200 58 40 chr15 39990535 39991031 -45704723 - MLT1D LTR MaLR 0 505 1 404 263 78 60 chr15 39991087 39991099 -45704655 - L1MC4a LINE L1 -155 5966 5956 1486 158 3 89 chr15 39991099 39991415 -45704339 - AluJo SINE Alu -23 289 1 404 263 78 60 chr15 39991415 39991619 -45704135 - L1MC4a LINE L1 -165 5956 5744 2107 90 10 14 chr15 39991639 39991928 -45703826 - AluSq SINE Alu -13 300 13 185 65 32 0 chr15 39992252 39992283 -45703471 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2358 91 3 0 chr15 39992428 39992724 -45703030 - AluSx SINE Alu -15 297 1 4415 173 46 8 chr15 39993090 39994092 -45701662 + L1MB7 LINE L1 5140 6184 0 304 248 41 16 chr15 39995128 39995249 -45700505 + L2 LINE L2 2816 2939 -375 979 176 11 11 chr15 39995431 39995617 -45700137 - MLT1D LTR MaLR 0 505 320 2260 181 99 36 chr15 39995617 39996204 -45699550 - LTR48B LTR ERV1 0 644 21 1497 160 48 65 chr15 39996214 39996551 -45699203 - MLT1D LTR MaLR -174 331 1 2339 117 3 0 chr15 39997489 39997798 -45697956 + AluSg SINE Alu 1 310 0 1561 214 116 16 chr15 39998021 39998461 -45697293 + LTR48B LTR ERV1 1 484 -160 273 211 66 26 chr15 39998474 39998550 -45697204 + MIR3 SINE MIR 125 203 -5 235 308 0 26 chr15 39999013 39999130 -45696624 + L1ME LINE L1 5799 5912 -209 259 284 62 86 chr15 39999298 39999460 -45696294 - L2 LINE L2 -4 3268 3111 489 335 51 19 chr15 39999691 40000061 -45695693 - L2 LINE L2 -1039 2275 1894 2015 152 3 3 chr15 40000545 40000855 -45694899 - AluJo SINE Alu -2 310 1 25 75 0 0 chr15 40001645 40001698 -45694056 + AT_rich Low_complexity Low_complexity 1 53 0 2114 116 17 10 chr15 40001730 40002032 -45693722 - AluSg SINE Alu -5 305 2 452 310 0 6 chr15 40003254 40003412 -45692342 + L1MC4a LINE L1 5750 5906 -1902 2550 157 34 5 chr15 40003732 40004145 -45691609 - MSTB LTR MaLR -1 425 1 593 236 208 0 chr15 40004332 40004548 -45691206 + MIR SINE MIR 2 262 0 2212 98 0 0 chr15 40004831 40005143 -45690611 - AluSg SINE Alu 0 315 4 379 292 156 0 chr15 40005680 40005834 -45689920 + MIR3 SINE MIR 31 208 0 767 257 23 0 chr15 40005871 40006042 -45689712 + MER63A DNA MER1_type 1 175 -35 423 0 0 0 chr15 40006821 40006868 -45688886 + (TA)n Simple_repeat Simple_repeat 2 48 0 1914 133 39 0 chr15 40006869 40007148 -45688606 - AluSx SINE Alu -22 290 1 184 325 241 0 chr15 40007874 40007957 -45687797 + L2 LINE L2 3141 3243 -29 297 301 0 21 chr15 40007982 40008075 -45687679 - MIR SINE MIR -4 258 168 299 256 33 22 chr15 40008726 40008816 -45686938 - L3b LINE CR1 -178 1405 1315 203 59 0 29 chr15 40009075 40009109 -45686645 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 456 290 74 11 chr15 40010243 40010419 -45685335 + MIR SINE MIR 47 233 -29 1294 69 0 13 chr15 40010461 40010620 -45685134 - L1PA10 LINE L1 -13 6155 5999 223 240 0 0 chr15 40012166 40012216 -45683538 - MIR SINE MIR -141 121 72 2105 126 0 0 chr15 40013683 40013969 -45681785 - AluJb SINE Alu -26 286 1 474 250 0 0 chr15 40014180 40014284 -45681470 + U13 snRNA snRNA 1 104 0 518 208 19 0 chr15 40015266 40015372 -45680382 + MLT1C LTR MaLR 1 108 -359 239 278 0 0 chr15 40015369 40015423 -45680331 + MLT1C LTR MaLR 414 467 0 * 2087 172 27 0 chr15 40016010 40016348 -45679406 + MER7A DNA MER2_type 1 345 -1 273 205 26 39 chr15 40017011 40017089 -45678665 + MLT1J LTR MaLR 375 451 -60 313 309 82 21 chr15 40017284 40017478 -45678276 - L2 LINE L2 -475 2839 2634 2626 55 0 0 chr15 40017840 40018151 -45677603 + AluY SINE Alu 1 311 0 374 261 148 7 chr15 40019404 40019546 -45676208 - MIR SINE MIR -70 192 31 626 239 174 0 chr15 40019891 40020092 -45675662 - MIR SINE MIR -16 246 11 1663 140 0 0 chr15 40021640 40021876 -45673878 - AluSg/x SINE Alu 0 312 77 738 159 0 0 chr15 40022616 40022723 -45673031 + FLAM_A SINE Alu 1 107 -35 185 281 125 21 chr15 40023162 40023258 -45672496 - MIR SINE MIR -84 178 73 2225 92 0 0 chr15 40023448 40023729 -45672025 + AluSx SINE Alu 30 310 -2 31 26 0 0 chr15 40024280 40024318 -45671436 + AT_rich Low_complexity Low_complexity 1 38 0 667 299 99 43 chr15 40025045 40025080 -45670674 - L2 LINE L2 0 3313 3281 1102 198 99 37 chr15 40025080 40025404 -45670350 + MER2 DNA MER2_type 1 344 0 667 299 99 43 chr15 40025404 40025473 -45670281 - L2 LINE L2 -32 3281 3217 3217 156 25 3 chr15 40025473 40026038 -45669716 + L1PA16 LINE L1 5587 6163 -3 667 299 99 43 chr15 40026038 40026436 -45669318 - L2 LINE L2 -96 3217 2793 346 326 104 0 chr15 40026554 40026689 -45669065 - MIR3 SINE MIR -56 152 4 433 284 116 32 chr15 40027980 40028170 -45667584 - L2 LINE L2 -1135 2179 1974 645 227 65 32 chr15 40028358 40028605 -45667149 + MER112 DNA MER1_type 1 255 -1 181 340 0 0 chr15 40028687 40028734 -45667020 + L2 LINE L2 3222 3268 -4 2011 160 0 0 chr15 40029103 40029409 -45666345 + AluJo SINE Alu 1 306 -6 648 201 30 8 chr15 40029681 40029815 -45665939 + AluYb8 SINE Alu 177 313 -5 372 330 28 0 chr15 40029945 40030054 -45665700 + L2 LINE L2 3201 3312 -1 302 241 58 86 chr15 40030126 40030300 -45665454 + HAL1 LINE L1 2338 2506 -1 2255 106 3 3 chr15 40030853 40031154 -45664600 + AluSc SINE Alu 1 301 -8 213 216 0 0 chr15 40031366 40031417 -45664337 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr15 40031785 40031806 -45663948 + AT_rich Low_complexity Low_complexity 1 21 0 1881 120 4 11 chr15 40033051 40033325 -45662429 + AluSx SINE Alu 1 272 -40 887 222 6 0 chr15 40034555 40034726 -45661028 - AluJo SINE Alu -17 295 124 221 246 35 0 chr15 40034823 40034880 -45660874 - L2 LINE L2 -5 3308 3250 373 288 176 39 chr15 40035446 40035599 -45660155 - MIR SINE MIR -28 234 45 1285 185 117 15 chr15 40035599 40035864 -45659890 - AluJo SINE Alu -10 292 1 373 288 176 39 chr15 40035864 40035915 -45659839 - MIR SINE MIR -217 45 2 477 0 0 0 chr15 40035936 40035989 -45659765 + (CA)n Simple_repeat Simple_repeat 2 54 0 211 313 129 35 chr15 40036161 40036362 -45659392 + L2 LINE L2 2836 3055 -217 237 135 0 0 chr15 40036694 40036746 -45659008 + (TA)n Simple_repeat Simple_repeat 1 52 0 5070 160 54 37 chr15 40036748 40037116 -45658638 - L1PB4 LINE L1 -8 6148 5788 2251 94 0 7 chr15 40037116 40037451 -45658303 + AluSq SINE Alu 1 333 0 5070 160 54 37 chr15 40037451 40038566 -45657188 - L1PB4 LINE L1 -368 5788 4639 768 122 0 0 chr15 40038567 40038674 -45657080 - U6 snRNA snRNA 0 107 1 369 0 0 0 chr15 40039149 40039190 -45656564 + (CA)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr15 40039190 40039213 -45656541 + (CAT)n Simple_repeat Simple_repeat 3 25 0 274 146 0 0 chr15 40039345 40039386 -45656368 - MER5A DNA MER1_type 0 189 149 470 275 30 15 chr15 40040013 40040144 -45655610 - MIR3 SINE MIR -61 147 15 1122 208 65 0 chr15 40040471 40040716 -45655038 + MER39 LTR ERV1 1 261 -446 1764 194 0 9 chr15 40040874 40041189 -45654565 + AluSx SINE Alu 1 312 0 302 336 72 32 chr15 40042523 40042648 -45653106 - L2 LINE L2 0 3313 3184 1655 189 112 26 chr15 40043523 40043979 -45651775 - MLT1D LTR MaLR -9 496 2 501 259 19 9 chr15 40043995 40044157 -45651597 - MIR SINE MIR -7 255 47 200 268 0 0 chr15 40044931 40044972 -45650782 + MIR SINE MIR 114 154 -108 1080 294 34 98 chr15 40045117 40046108 -45649646 - L2 LINE L2 -18 3254 2334 347 0 23 0 chr15 40049346 40049389 -45646365 + (TG)n Simple_repeat Simple_repeat 2 45 0 2595 186 15 4 chr15 40049703 40050245 -45645509 + L1MB7 LINE L1 5591 6138 -46 673 263 78 0 chr15 40050260 40050492 -45645262 - L1M4 LINE L1 -2268 3878 3629 204 284 0 0 chr15 40050768 40050863 -45644891 + GA-rich Low_complexity Low_complexity 1 95 0 1545 198 83 0 chr15 40051177 40051465 -45644289 + AluJo SINE Alu 1 312 0 208 87 0 43 chr15 40051582 40051628 -45644126 + (GGA)n Simple_repeat Simple_repeat 2 45 0 569 329 176 30 chr15 40051741 40052504 -45643250 + L2 LINE L2 2209 3066 -206 401 279 57 29 chr15 40053012 40053152 -45642602 + L2 LINE L2 3129 3272 0 1979 110 0 79 chr15 40053392 40053709 -45642045 + AluSx SINE Alu 1 292 -20 218 385 39 0 chr15 40053991 40054069 -45641685 + L3 LINE CR1 227 307 -1270 22 0 0 0 chr15 40054110 40054132 -45641622 + AT_rich Low_complexity Low_complexity 1 22 0 385 105 40 0 chr15 40054912 40054988 -45640766 + L1PA15 LINE L1 6087 6165 0 382 296 92 29 chr15 40055313 40055692 -45640062 + HAL1b LINE L1 68 470 -878 272 232 39 78 chr15 40055953 40056286 -45639468 - L1ME LINE L1 -2153 3927 3598 26 30 0 0 chr15 40056431 40056464 -45639290 + AT_rich Low_complexity Low_complexity 1 33 0 1417 136 17 13 chr15 40056567 40056644 -45639110 - MER46A DNA MER2_type -2495 236 161 1608 178 71 3 chr15 40056644 40056970 -45638784 + MER7A DNA MER2_type 1 346 0 1417 136 17 13 chr15 40056970 40057127 -45638627 - MER46A DNA MER2_type -2570 161 1 313 311 0 19 chr15 40057198 40057301 -45638453 - L1ME LINE L1 -2842 3238 3138 297 330 113 43 chr15 40057437 40057719 -45638035 + L3 LINE CR1 452 753 -824 632 231 24 47 chr15 40057756 40057925 -45637829 - MER91B DNA MER1_type -12 178 14 584 65 0 0 chr15 40157931 40158008 -45537746 - L1PB2 LINE L1 -191 5960 5884 2349 71 0 0 chr15 40158018 40158324 -45537430 - AluSc SINE Alu 0 306 1 665 207 0 7 chr15 40158328 40158473 -45537281 + Charlie4 DNA MER1_type 1818 1961 0 290 263 98 41 chr15 40158510 40158704 -45537050 - LTR33 LTR ERVL -310 211 7 216 0 0 0 chr15 40159850 40159874 -45535880 + (A)n Simple_repeat Simple_repeat 1 24 0 320 338 60 15 chr15 40159874 40160007 -45535747 + L1ME LINE L1 5296 5434 -808 555 298 38 8 chr15 40160020 40160255 -45535499 + L1ME LINE L1 5472 5713 -408 213 173 284 0 chr15 40160463 40160544 -45535210 - MIR SINE MIR 0 262 159 1047 253 43 43 chr15 40160629 40161004 -45534750 + LTR16A LTR ERVL 76 450 0 362 240 50 25 chr15 40161064 40161185 -45534569 + HERV16 LTR ERVL 85 208 -4788 597 253 138 30 chr15 40161361 40161665 -45534089 + HERV16 LTR ERVL 468 804 -4192 2333 94 16 3 chr15 40162529 40162838 -45532916 + AluSp SINE Alu 1 313 0 678 296 164 18 chr15 40163622 40164061 -45531693 + L1M4 LINE L1 2425 2927 -3219 1648 242 108 9 chr15 40164192 40164746 -45531008 + MLT1E2 LTR MaLR 14 622 -4 26 30 0 0 chr15 40164834 40164867 -45530887 + AT_rich Low_complexity Low_complexity 1 33 0 570 291 64 26 chr15 40165004 40165393 -45530361 - L1ME LINE L1 -3596 2484 2081 1237 217 13 26 chr15 40165917 40166221 -45529533 + MLT1C LTR MaLR 163 462 -5 834 317 14 32 chr15 40166303 40166650 -45529104 - L1ME LINE L1 -5448 622 282 356 344 6 11 chr15 40166690 40166870 -45528884 - L1ME LINE L1 -5871 199 21 260 269 64 39 chr15 40166872 40166950 -45528804 + MER5B DNA MER1_type 99 178 0 207 294 20 0 chr15 40168103 40168154 -45527600 - L3 LINE CR1 -197 1380 1329 180 0 0 0 chr15 40169461 40169481 -45526273 + (A)n Simple_repeat Simple_repeat 1 20 0 231 330 30 20 chr15 40169745 40169845 -45525909 - MIR SINE MIR -10 252 152 492 245 49 7 chr15 40170025 40170168 -45525586 - MER112 DNA MER1_type -13 247 99 220 222 95 0 chr15 40171177 40171253 -45524501 - MIR SINE MIR -95 113 37 423 327 0 7 chr15 40171371 40171521 -45524233 - MIR SINE MIR -70 192 44 253 184 58 92 chr15 40171566 40171653 -45524101 - MIR SINE MIR -67 195 112 492 257 75 53 chr15 40171664 40171851 -45523903 - MIR3 SINE MIR -5 203 13 255 194 0 148 chr15 40171900 40171922 -45523832 + MIR SINE MIR 102 126 -136 2123 157 31 28 chr15 40171922 40172311 -45523443 - MLT1B LTR MaLR 0 390 1 255 194 0 148 chr15 40172311 40172396 -45523358 + MIR SINE MIR 126 193 -69 433 243 69 7 chr15 40173110 40173254 -45522500 + MIR3 SINE MIR 35 187 -21 223 264 123 9 chr15 40173926 40174032 -45521722 + MIR SINE MIR 64 181 -81 206 323 108 0 chr15 40174277 40174370 -45521384 + L2 LINE L2 3193 3295 -18 635 314 77 8 chr15 40175604 40175865 -45519889 + MER69 DNA AcHobo 116 394 -2132 * 669 214 7 0 chr15 40175864 40176004 -45519750 + MER69 DNA AcHobo 1947 2087 -439 4809 186 39 9 chr15 40176004 40176211 -45519543 - L1M3f LINE L1 -4378 950 751 2803 7 0 0 chr15 40176211 40176511 -45519243 - AluYa5 SINE Alu -11 300 1 4809 186 39 9 chr15 40176511 40177213 -45518541 - L1M3f LINE L1 -4577 751 14 1178 236 152 3 chr15 40177223 40177579 -45518175 + MER69 DNA AcHobo 2073 2481 -45 335 208 361 8 chr15 40178124 40178254 -45517500 - MIR SINE MIR -10 252 77 427 300 61 17 chr15 40180837 40181017 -45514737 + MIR SINE MIR 75 262 0 816 93 0 0 chr15 40181237 40181345 -45514409 + MLT1C LTR MaLR 1 108 -359 3596 202 105 57 chr15 40181346 40182329 -45513425 + MLT1C-int LTR MaLR 338 1367 -4 859 148 0 54 chr15 40182335 40182484 -45513270 + MLT1C LTR MaLR 3 143 -324 3073 51 26 10 chr15 40182484 40182875 -45512879 + THE1A-int LTR MaLR 1184 1580 0 2793 99 3 0 chr15 40182875 40183229 -45512525 + THE1A LTR MaLR 1 355 0 1351 200 108 30 chr15 40183229 40183534 -45512220 + MLT1C LTR MaLR 139 467 0 204 217 0 22 chr15 40183849 40183895 -45511859 + (CA)n Simple_repeat Simple_repeat 2 46 0 1265 227 72 28 chr15 40183895 40184216 -45511538 + MER2 DNA MER2_type 1 335 -10 209 205 0 0 chr15 40184216 40184255 -45511499 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 210 335 124 49 chr15 40186501 40186871 -45508883 - L2 LINE L2 -349 2965 2568 302 342 27 9 chr15 40187608 40187719 -45508035 - MIR SINE MIR -115 147 35 329 109 18 0 chr15 40187792 40187847 -45507907 + (TA)n Simple_repeat Simple_repeat 1 56 0 247 175 35 0 chr15 40187847 40187904 -45507850 - L1MCa LINE L1 -4362 2064 2006 24 0 0 0 chr15 40188137 40188161 -45507593 + AT_rich Low_complexity Low_complexity 1 24 0 189 280 20 0 chr15 40190055 40190105 -45505649 + L3 LINE CR1 1516 1566 -11 2138 163 102 13 chr15 40190767 40191240 -45504514 + MER69 DNA AcHobo 2010 2524 -2 602 258 86 27 chr15 40191277 40191649 -45504105 + L1MC4a LINE L1 864 1257 -4862 688 183 17 9 chr15 40192095 40192210 -45503544 + FLAM_A SINE Alu 1 116 -17 419 289 62 63 chr15 40192366 40192737 -45503017 + L1MC4a LINE L1 4295 4666 -1463 2159 117 0 13 chr15 40192737 40193046 -45502708 + AluSx SINE Alu 1 305 -7 419 289 62 63 chr15 40193046 40193211 -45502543 + L1MC4a LINE L1 4666 4830 -1299 324 309 53 7 chr15 40193316 40193468 -45502286 + L1MC4a LINE L1 4874 5032 -1097 234 62 0 0 chr15 40193481 40193513 -45502241 + (TA)n Simple_repeat Simple_repeat 2 33 0 4757 224 63 15 chr15 40193768 40195473 -45500281 + L1MC4a LINE L1 5237 7791 0 1601 109 0 13 chr15 40195755 40195984 -45499770 - AluSg/x SINE Alu -11 301 76 264 290 32 21 chr15 40196101 40196194 -45499560 - MLT1J2 LTR MaLR -14 436 343 248 289 86 70 chr15 40196247 40196375 -45499379 - MLT1I LTR MaLR -189 220 91 618 272 116 37 chr15 40196408 40196585 -45499169 + L1ME4a LINE L1 2367 2529 -3600 2720 132 30 26 chr15 40196585 40197011 -45498743 - MSTA LTR MaLR 0 428 1 618 272 116 37 chr15 40197011 40197293 -45498461 + L1ME4a LINE L1 2529 2787 -3342 2107 118 7 3 chr15 40197293 40197589 -45498165 - AluSx SINE Alu -15 297 1 618 272 116 37 chr15 40197589 40197838 -45497916 + L1ME4a LINE L1 2787 3132 -2997 438 293 112 19 chr15 40198164 40198743 -45497011 + L1ME4a LINE L1 4916 5624 -523 359 289 48 6 chr15 40198988 40199132 -45496622 + L1ME4a LINE L1 5655 5807 -297 2782 93 3 0 chr15 40199132 40199487 -45496267 + L1PB1 LINE L1 5794 6149 -2 359 289 48 6 chr15 40199487 40199501 -45496253 + L1ME4a LINE L1 5807 5819 -285 298 61 41 0 chr15 40199622 40199671 -45496083 + (CA)n Simple_repeat Simple_repeat 1 51 0 336 247 234 25 chr15 40200184 40200342 -45495412 + MIR SINE MIR 1 191 -71 * 378 343 122 0 chr15 40200340 40200512 -45495242 - MIR SINE MIR 0 262 70 1864 173 3 3 chr15 40201289 40201590 -45494164 - AluSx SINE Alu -11 301 1 2418 129 17 0 chr15 40201609 40201966 -45493788 + MER57B LTR ERV1 1 363 -71 314 223 49 12 chr15 40202066 40202200 -45493554 + HAL1b LINE L1 1251 6117 -4 210 331 83 48 chr15 40202291 40202436 -45493318 + MIR SINE MIR 34 183 -79 339 25 0 0 chr15 40202556 40202596 -45493158 + (CA)n Simple_repeat Simple_repeat 2 41 0 1501 138 121 32 chr15 40203370 40203652 -45492102 + AluSx SINE Alu 1 307 -5 325 293 130 93 chr15 40203828 40204334 -45491420 + L2 LINE L2 2590 3136 -136 2040 128 0 3 chr15 40204334 40204681 -45491073 - AluSx SINE Alu 0 346 1 325 293 130 93 chr15 40204681 40204824 -45490930 + L2 LINE L2 3136 3272 0 337 155 99 28 chr15 40204951 40205022 -45490732 + MLT1A1 LTR MaLR 2 77 -351 2161 142 15 3 chr15 40205045 40205383 -45490371 + MER47A DNA MER2_type 23 364 -2 950 202 58 62 chr15 40205386 40205478 -45490276 + MLT1A1 LTR MaLR 62 153 -212 2021 113 67 0 chr15 40205478 40205760 -45489994 + AluSx SINE Alu 1 301 -11 950 202 58 62 chr15 40205760 40206016 -45489738 + MLT1A1 LTR MaLR 153 365 0 270 306 148 34 chr15 40207241 40207450 -45488304 + MIR SINE MIR 20 252 -10 198 0 0 0 chr15 40208397 40208419 -45487335 + (T)n Simple_repeat Simple_repeat 1 22 0 214 279 127 0 chr15 40208465 40208544 -45487210 - MIR SINE MIR -68 140 61 291 240 30 30 chr15 40208655 40208755 -45486999 - L1ME4a LINE L1 -2 6119 6020 1413 260 210 59 chr15 40208922 40209935 -45485819 - L2 LINE L2 -1568 1746 581 1998 157 0 0 chr15 40210009 40210314 -45485440 - AluSx SINE Alu -7 305 1 1076 128 0 0 chr15 40210580 40210772 -45484982 - AluSg/x SINE Alu 0 325 134 2205 131 0 6 chr15 40210805 40211118 -45484636 - AluSx SINE Alu 0 312 2 233 295 0 0 chr15 40211300 40211361 -45484393 - MER5A DNA MER1_type 0 189 129 182 37 37 0 chr15 40211690 40211717 -45484037 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 766 231 23 0 chr15 40212734 40212907 -45482847 - MIR SINE MIR -5 257 81 300 276 146 81 chr15 40212948 40213270 -45482484 - L2 LINE L2 -18 3254 2912 1090 192 65 19 chr15 40214041 40214169 -45481585 - MER58A DNA MER1_type -2196 224 81 198 0 0 0 chr15 40214169 40214191 -45481563 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1090 192 65 19 chr15 40214191 40214276 -45481478 - MER58A DNA MER1_type -2339 81 1 180 290 32 54 chr15 40214580 40214673 -45481081 - MIR SINE MIR -140 122 32 418 299 43 27 chr15 40215311 40215495 -45480259 - MER5A DNA MER1_type -2 187 1 430 269 94 12 chr15 40216163 40216323 -45479431 + LTR33 LTR ERVL 306 478 -43 413 298 95 6 chr15 40216886 40217054 -45478700 + MER117 DNA MER1_type 5 187 -10 387 289 56 0 chr15 40219865 40220007 -45475747 - MIR SINE MIR -3 259 110 190 194 0 0 chr15 40220278 40220309 -45475445 + MIR SINE MIR 15 45 -217 207 0 0 0 chr15 40220644 40220667 -45475087 + (A)n Simple_repeat Simple_repeat 1 23 0 494 306 91 26 chr15 40221273 40221497 -45474257 + MIR SINE MIR 11 250 -12 1524 211 77 48 chr15 40222071 40222525 -45473229 + MLT1C LTR MaLR 1 467 0 294 235 118 0 chr15 40222755 40222823 -45472931 + Zaphod DNA AcHobo 3947 4022 -9 245 197 61 0 chr15 40222905 40222971 -45472783 + MIR SINE MIR 91 160 -102 24 0 0 0 chr15 40223055 40223079 -45472675 + AT_rich Low_complexity Low_complexity 1 24 0 512 335 24 29 chr15 40223240 40223446 -45472308 - MIR3 SINE MIR 0 208 4 183 80 0 0 chr15 40223968 40223993 -45471761 + (GA)n Simple_repeat Simple_repeat 2 26 0 667 288 91 5 chr15 40224468 40224687 -45471067 + MIR SINE MIR 25 262 0 1616 200 0 17 chr15 40226229 40226524 -45469230 + AluJo SINE Alu 1 290 -22 405 303 52 106 chr15 40226614 40227056 -45468698 + L2 LINE L2 2855 3272 0 2448 86 0 0 chr15 40227232 40227535 -45468219 - AluSc SINE Alu -4 305 3 217 233 17 17 chr15 40227549 40227609 -45468145 + L2 LINE L2 3184 3243 -29 2208 124 3 6 chr15 40228239 40228553 -45467201 - AluSp SINE Alu 0 313 1 823 180 42 0 chr15 40228670 40228837 -45466917 - LTR49-int LTR ERV1 -562 5769 5596 829 176 31 0 chr15 40228901 40229060 -45466694 + MER50-int LTR ERV1 5727 5890 -1315 354 247 49 12 chr15 40229955 40230036 -45465718 + MIR SINE MIR 23 106 -156 455 0 0 18 chr15 40231245 40231301 -45464453 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 323 15 0 chr15 40233425 40233490 -45462264 + MIR SINE MIR 89 154 -108 297 333 121 10 chr15 40233681 40233879 -45461875 - L2 LINE L2 -48 3224 3005 334 0 43 0 chr15 40234677 40234723 -45461031 + (TG)n Simple_repeat Simple_repeat 1 48 0 298 274 187 40 chr15 40234917 40235191 -45460563 - L1MEd LINE L1 -860 1630 1114 322 184 101 18 chr15 40235272 40235381 -45460373 - L1MEd LINE L1 -5029 1090 973 1510 260 25 7 chr15 40235431 40235869 -45459885 - L1ME3 LINE L1 -1 6161 5716 574 326 147 35 chr15 40236042 40236670 -45459084 - L1MEd LINE L1 -5353 766 69 702 270 182 52 chr15 40238272 40238717 -45457037 + MLT1H LTR MaLR 47 549 0 402 268 63 24 chr15 40239048 40239175 -45456579 + MIR SINE MIR 118 249 -13 688 272 45 18 chr15 40239207 40239441 -45456313 - MIR SINE MIR 0 262 21 531 250 15 52 chr15 40239703 40239839 -45455915 + MIR SINE MIR 12 142 -120 209 225 0 0 chr15 40239864 40239904 -45455850 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 200 303 141 20 chr15 40240880 40240979 -45454775 - MIR SINE MIR -80 182 72 392 243 105 40 chr15 40241153 40241305 -45454449 - MER5A DNA MER1_type -22 167 6 945 171 68 49 chr15 40242695 40242900 -45452854 - MER3 DNA MER1_type 0 209 1 1733 178 0 11 chr15 40243126 40243407 -45452347 + AluJb SINE Alu 1 278 -34 203 30 0 61 chr15 40243407 40243440 -45452314 + (GGAAA)n Simple_repeat Simple_repeat 5 35 0 541 211 11 50 chr15 40244361 40244541 -45451213 + HAL1 LINE L1 1107 1279 -1228 1005 265 132 5 chr15 40244543 40244913 -45450841 + HAL1 LINE L1 1486 1902 -605 718 305 117 35 chr15 40244949 40245326 -45450428 + MLT1I LTR MaLR 1 408 -1 384 250 14 40 chr15 40245331 40245479 -45450275 + HAL1 LINE L1 1954 2097 -410 757 275 46 39 chr15 40245724 40246113 -45449641 + HAL1 LINE L1 2116 2507 0 249 244 44 33 chr15 40246263 40246353 -45449401 + HAL1b LINE L1 334 424 -924 25 51 0 0 chr15 40246619 40246658 -45449096 + AT_rich Low_complexity Low_complexity 1 39 0 2388 100 0 3 chr15 40246658 40246969 -45448785 + AluSg SINE Alu 1 310 0 324 0 0 0 chr15 40246979 40247015 -45448739 + (TA)n Simple_repeat Simple_repeat 2 37 0 263 275 96 54 chr15 40247227 40247562 -45448192 + L1M4 LINE L1 3692 4040 -2106 269 297 14 14 chr15 40247899 40248037 -45447717 + L1M4 LINE L1 4475 4612 -1534 222 37 0 0 chr15 40248041 40248068 -45447686 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 986 9 0 0 chr15 40249021 40249131 -45446623 + AluYb8 SINE Alu 209 318 0 1888 159 0 16 chr15 40249831 40250139 -45445615 + AluJb SINE Alu 1 303 -9 315 0 0 0 chr15 40250669 40250682 -45445072 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr15 40250682 40250717 -45445037 + (TG)n Simple_repeat Simple_repeat 1 35 0 244 291 0 0 chr15 40252015 40252070 -45443684 + (ATG)n Simple_repeat Simple_repeat 2 56 0 216 204 23 0 chr15 40252308 40252352 -45443402 + GA-rich Low_complexity Low_complexity 3 47 0 15410 132 40 11 chr15 40252993 40253219 -45442535 - Tigger1 DNA MER2_type 0 2418 2200 1547 189 21 11 chr15 40253219 40253539 -45442215 + AluJb SINE Alu 1 323 0 15410 132 40 11 chr15 40253539 40255662 -45440092 - Tigger1 DNA MER2_type -218 2200 1 356 276 97 8 chr15 40256184 40256318 -45439436 - MIR SINE MIR -14 248 103 237 125 196 36 chr15 40256564 40256620 -45439134 - L2 LINE L2 -17 3255 3191 1481 199 65 46 chr15 40257611 40257978 -45437776 + MLT1A2 LTR MaLR 1 374 0 1361 195 65 0 chr15 40258323 40258506 -45437248 - AluJb SINE Alu -4 308 100 282 29 0 0 chr15 40258506 40258541 -45437213 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1361 195 65 0 chr15 40258541 40258634 -45437120 - AluJb SINE Alu -212 100 14 672 177 88 0 chr15 40258650 40258763 -45436991 - FLAM_C SINE Alu -10 123 1 504 230 158 20 chr15 40259359 40259511 -45436243 - MER5A DNA MER1_type -8 181 9 183 80 0 0 chr15 40259725 40259750 -45436004 + (T)n Simple_repeat Simple_repeat 1 25 0 356 340 76 71 chr15 40260559 40261202 -45434552 + L2 LINE L2 2557 3222 -50 401 331 97 6 chr15 40263090 40263265 -45432489 + MIR SINE MIR 2 192 -70 2128 109 3 0 chr15 40263479 40263762 -45431992 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr15 40263762 40263785 -45431969 + AT_rich Low_complexity Low_complexity 1 23 0 473 307 98 12 chr15 40263993 40264156 -45431598 + MIR3 SINE MIR 26 202 -6 274 259 119 43 chr15 40264527 40264694 -45431060 + MIR SINE MIR 31 206 -56 327 49 0 0 chr15 40265116 40265157 -45430597 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 118 0 0 chr15 40267076 40267127 -45428627 + (CA)n Simple_repeat Simple_repeat 2 52 0 846 224 57 5 chr15 40267148 40267358 -45428396 - MIR SINE MIR -10 252 32 790 275 102 62 chr15 40267580 40267984 -45427770 + MLT1J1 LTR MaLR 7 426 -20 538 226 43 38 chr15 40268709 40268806 -45426948 - LTR67 LTR ERVL -5 552 452 2013 172 13 54 chr15 40268806 40269195 -45426559 - MLT1A2 LTR MaLR -1 373 1 538 226 43 38 chr15 40269195 40269283 -45426471 - LTR67 LTR ERVL -105 452 366 476 332 18 8 chr15 40269583 40269843 -45425911 - MIR SINE MIR -17 245 19 772 248 55 20 chr15 40273250 40273452 -45422302 + MIR SINE MIR 27 235 -27 309 326 112 56 chr15 40275680 40275931 -45419823 - L2 LINE L2 -161 3111 2875 2340 106 0 0 chr15 40275931 40276234 -45419520 + AluSx SINE Alu 1 303 -9 309 326 112 56 chr15 40276234 40276677 -45419077 - L2 LINE L2 -397 2875 2376 449 281 21 46 chr15 40276934 40277172 -45418582 - MLT1L LTR MaLR -328 287 56 297 277 60 49 chr15 40277190 40277374 -45418380 - MLT1I LTR MaLR -57 352 167 526 296 97 10 chr15 40277556 40277762 -45417992 - L3 LINE CR1 -137 1440 1217 270 313 174 9 chr15 40278880 40278995 -45416759 - L2 LINE L2 0 3313 3180 1969 151 7 0 chr15 40279032 40279330 -45416424 + AluSx SINE Alu 1 300 -12 934 288 0 0 chr15 40279334 40279563 -45416191 - MIR SINE MIR -11 251 23 323 260 80 65 chr15 40279927 40280127 -45415627 - MIR3 SINE MIR -5 203 1 22 70 0 0 chr15 40281644 40281687 -45414067 + AT_rich Low_complexity Low_complexity 1 43 0 1390 156 0 0 chr15 40281824 40282048 -45413706 + AluSg/x SINE Alu 81 304 0 220 380 116 0 chr15 40282182 40282303 -45413451 + MIR SINE MIR 26 160 -102 408 284 97 15 chr15 40282675 40282809 -45412945 - L2 LINE L2 -940 2374 2230 212 328 84 103 chr15 40282813 40283075 -45412679 + L2 LINE L2 2995 3251 -21 192 233 0 0 chr15 40284021 40284064 -45411690 + MIR SINE MIR 139 181 -81 514 104 0 0 chr15 40284085 40284162 -45411592 + Alu SINE Alu 229 305 -4 22 35 0 0 chr15 40284945 40284974 -45410780 + AT_rich Low_complexity Low_complexity 1 29 0 250 109 22 0 chr15 40286162 40286208 -45409546 - MADE1 DNA Mariner 0 80 34 473 378 7 7 chr15 40286282 40286557 -45409197 + L1MEc LINE L1 159 433 -5963 1758 164 14 0 chr15 40286852 40287145 -45408609 + AluJb SINE Alu 1 297 -15 1322 236 88 93 chr15 40287208 40287265 -45408489 + L1MEc LINE L1 802 858 -5538 2256 118 0 0 chr15 40287265 40287569 -45408185 + AluSq SINE Alu 1 304 -9 1322 236 88 93 chr15 40287569 40288968 -45406786 + L1MEc LINE L1 858 2251 -4145 2148 267 81 12 chr15 40289018 40289977 -45405777 + L1MEc LINE L1 2345 3546 -2669 1890 121 6 86 chr15 40289977 40290316 -45405438 - AluSx SINE Alu 0 312 1 2148 267 81 12 chr15 40290316 40290715 -45405039 + L1MEc LINE L1 3546 3916 -2299 865 245 38 38 chr15 40290716 40291112 -45404642 - L1M4 LINE L1 -1621 4525 4130 3304 117 36 0 chr15 40291136 40291659 -45404095 + L1PA16 LINE L1 5625 6166 0 1233 254 29 58 chr15 40291929 40292554 -45403200 - L1MDb LINE L1 -5029 1514 908 489 355 33 39 chr15 40293086 40293393 -45402361 - L1MDb LINE L1 -6211 329 25 1579 186 7 11 chr15 40293753 40294032 -45401722 + AluJo SINE Alu 1 278 -34 625 44 11 11 chr15 40294034 40294124 -45401630 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 248 372 76 31 chr15 40296012 40296302 -45399452 - L2 LINE L2 -166 3106 2804 187 357 66 27 chr15 40296430 40296688 -45399066 - L2 LINE L2 -671 2643 2376 3294 192 33 25 chr15 40296726 40297020 -45398734 - L1ME1 LINE L1 -6 6160 5870 2369 66 3 30 chr15 40297020 40297325 -45398429 + AluY SINE Alu 3 299 -12 3294 192 33 25 chr15 40297325 40297813 -45397941 - L1ME1 LINE L1 -296 5870 5372 279 268 134 18 chr15 40297833 40297945 -45397809 - L2 LINE L2 -996 2318 2194 1820 159 6 31 chr15 40298297 40298581 -45397173 + AluJo SINE Alu 1 278 -34 186 71 0 0 chr15 40298581 40298609 -45397145 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1820 159 6 31 chr15 40298609 40298644 -45397110 + AluJo SINE Alu 278 312 0 877 272 17 88 chr15 40298679 40298706 -45397048 - Charlie4 DNA MER1_type -318 1643 1616 1795 163 0 0 chr15 40298706 40299028 -45396726 - AluJb SINE Alu 0 322 1 877 272 17 88 chr15 40299028 40299660 -45396094 - Charlie4 DNA MER1_type -345 1616 1029 5735 111 18 36 chr15 40299690 40300745 -45395009 - L1MA6 LINE L1 0 6300 5265 473 322 20 4 chr15 40300869 40301124 -45394630 - Charlie4 DNA MER1_type -1071 890 632 671 204 51 11 chr15 40301705 40301881 -45393873 - Charlie4 DNA MER1_type -1671 290 108 698 126 0 5 chr15 40301882 40302128 -45393626 + AluSq SINE Alu 1 279 -34 372 94 0 0 chr15 40302130 40302183 -45393571 + (GA)n Simple_repeat Simple_repeat 1 53 0 425 202 67 0 chr15 40302184 40302288 -45393466 - Charlie4 DNA MER1_type -1844 117 7 972 330 51 44 chr15 40302318 40303315 -45392439 + ERVL LTR ERVL 4344 5389 -375 603 260 11 33 chr15 40303502 40303683 -45392071 + LTR33 LTR ERVL 1 177 -344 22 35 0 0 chr15 40305746 40305775 -45389979 + AT_rich Low_complexity Low_complexity 1 29 0 5192 146 47 25 chr15 40305971 40307858 -45387896 - L1MA8 LINE L1 0 6291 4353 772 208 87 14 chr15 40308328 40308616 -45387138 - MER69 DNA AcHobo -68 2458 2150 3146 221 91 48 chr15 40308622 40309614 -45386140 - L1MC4a LINE L1 -6 7802 6759 2060 54 0 0 chr15 40309614 40309854 -45385900 - AluY SINE Alu -4 307 68 3146 221 91 48 chr15 40309854 40309931 -45385823 - L1MC4a LINE L1 -1049 6759 6687 1911 209 74 27 chr15 40309927 40310440 -45385314 - L1ME1 LINE L1 -275 5891 5355 * 2335 205 58 11 chr15 40310440 40311090 -45384664 - MER69 DNA AcHobo -388 2138 1458 2047 101 0 57 chr15 40311093 40311411 -45384343 + AluSg SINE Alu 1 300 -10 505 266 19 13 chr15 40311417 40311575 -45384179 - MER69 DNA AcHobo -944 282 124 255 357 115 19 chr15 40312936 40313093 -45382661 + L2 LINE L2 3100 3271 -1 255 182 0 0 chr15 40313113 40313157 -45382597 - L2 LINE L2 -16 3297 3254 654 253 53 47 chr15 40313158 40313498 -45382256 - L1MEd LINE L1 -4862 1257 916 307 346 50 17 chr15 40313537 40313777 -45381977 - L1MEd LINE L1 -5208 911 664 555 328 32 16 chr15 40315126 40315379 -45380375 - MIR SINE MIR -1 261 5 252 250 14 0 chr15 40316730 40316802 -45378952 + (CA)n Simple_repeat Simple_repeat 2 74 0 263 252 92 8 chr15 40316939 40317058 -45378696 + L1MC/D LINE L1 5350 5478 -2330 288 0 0 0 chr15 40317294 40317326 -45378428 + (CA)n Simple_repeat Simple_repeat 2 33 0 467 249 39 68 chr15 40317757 40317994 -45377760 - MIR SINE MIR -30 232 3 943 160 49 36 chr15 40318030 40318255 -45377499 + L1M4 LINE L1 4563 4790 -1356 6555 161 13 6 chr15 40318255 40319413 -45376341 - Ricksha_b DNA DNA 0 1254 89 2794 212 57 43 chr15 40319602 40320478 -45375276 - L1ME3 LINE L1 -21 6141 5254 4380 124 13 14 chr15 40320558 40321270 -45374484 - L1PA16 LINE L1 -3 6163 5453 204 40 0 0 chr15 40321922 40321947 -45373807 + (CA)n Simple_repeat Simple_repeat 2 26 0 193 373 63 24 chr15 40321976 40322102 -45373652 + L2 LINE L2 3138 3268 -4 2248 113 0 0 chr15 40322812 40323113 -45372641 + AluSq SINE Alu 1 301 -12 5595 222 32 14 chr15 40323828 40326071 -45369683 + L1M3f LINE L1 14 2279 -4049 2285 110 0 7 chr15 40326071 40326381 -45369373 + AluSx SINE Alu 1 308 -4 1294 201 34 40 chr15 40326595 40326893 -45368861 - AluJo SINE Alu -16 296 1 373 321 93 72 chr15 40328483 40328843 -45366911 - L2 LINE L2 -4 3268 2896 2771 0 0 7 chr15 40328843 40329148 -45366606 + AluYa5 SINE Alu 1 303 -8 373 321 93 72 chr15 40329148 40329204 -45366550 - L2 LINE L2 -376 2896 2843 280 277 21 35 chr15 40329255 40329396 -45366358 - MER103 DNA DNA -11 155 17 38 51 0 0 chr15 40330088 40330147 -45365607 + AT_rich Low_complexity Low_complexity 1 59 0 1565 174 206 9 chr15 40331129 40331565 -45364189 + Charlie1b DNA MER1_type 1 522 -1 2302 124 71 28 chr15 40331873 40332308 -45363446 - LTR24C LTR ERV1 -181 454 1 1867 130 70 0 chr15 40332357 40332642 -45363112 + AluSx SINE Alu 1 305 -7 600 111 134 111 chr15 40333858 40334030 -45361724 + MER106B DNA MER1_type 46 1044 -15 206 217 0 0 chr15 40334299 40334345 -45361409 + L2 LINE L2 3268 3313 0 687 245 97 25 chr15 40334550 40334746 -45361008 - MER63A DNA MER1_type 0 210 1 192 328 8 42 chr15 40335148 40335267 -45360487 + L2 LINE L2 3193 3307 -6 217 316 51 8 chr15 40336414 40336531 -45359223 - MIR SINE MIR -128 134 13 710 231 262 39 chr15 40336935 40337290 -45358464 - MER57A LTR ERV1 0 403 1 299 241 116 36 chr15 40337290 40337402 -45358352 - MIR SINE MIR -71 137 17 193 346 50 0 chr15 40337501 40337602 -45358152 + MIR SINE MIR 77 182 -80 346 279 82 19 chr15 40338190 40338348 -45357406 - MIR3 SINE MIR -34 174 7 1253 186 57 93 chr15 40338496 40338882 -45356872 + MLT1A2 LTR MaLR 3 374 0 207 100 300 0 chr15 40338982 40339022 -45356732 - L2 LINE L2 0 3313 3262 2031 132 7 0 chr15 40339410 40339697 -45356057 + AluSg SINE Alu 1 289 -21 330 26 0 0 chr15 40339698 40339737 -45356017 + (TA)n Simple_repeat Simple_repeat 1 39 0 271 349 0 0 chr15 40340151 40340234 -45355520 + L2 LINE L2 3209 3291 -22 244 318 66 13 chr15 40341702 40341853 -45353901 - L1ME LINE L1 -273 5897 5739 2147 111 3 3 chr15 40342423 40342721 -45353033 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 40343122 40343145 -45352609 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr15 40344990 40345054 -45350700 + AT_rich Low_complexity Low_complexity 1 64 0 5249 162 22 22 chr15 40345559 40347485 -45348269 + L1PA16 LINE L1 4221 6147 -19 1937 135 83 9 chr15 40347626 40347975 -45347779 + THE1C LTR MaLR 1 375 0 234 329 53 13 chr15 40348878 40348954 -45346800 + L2 LINE L2 3194 3272 0 2245 113 0 3 chr15 40351109 40351411 -45344343 + AluSq SINE Alu 1 301 -12 346 181 60 0 chr15 40352864 40352947 -45342807 + L1ME1 LINE L1 6074 6161 -5 23 33 0 0 chr15 40353360 40353390 -45342364 + AT_rich Low_complexity Low_complexity 1 30 0 906 216 25 25 chr15 40353980 40354184 -45341570 - MER20 DNA MER1_type 0 219 16 243 61 0 0 chr15 40354271 40354304 -45341450 + (TG)n Simple_repeat Simple_repeat 2 34 0 1724 153 21 38 chr15 40354502 40354789 -45340965 - AluJo SINE Alu -30 282 1 238 65 22 22 chr15 40354982 40355028 -45340726 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4058 35 2 0 chr15 40355028 40355507 -45340247 - L1PA3 LINE L1 -24 6131 5652 235 260 87 87 chr15 40356359 40356509 -45339245 - L2 LINE L2 -4 3309 3160 769 294 77 4 chr15 40356930 40357165 -45338589 - MIR SINE MIR 0 262 11 315 325 42 8 chr15 40357430 40357550 -45338204 + L1M4 LINE L1 5078 5201 -945 314 83 62 0 chr15 40357551 40357599 -45338155 + L1P4 LINE L1 5453 5503 -658 1296 218 67 102 chr15 40359673 40360344 -45335410 + L1MC4 LINE L1 7407 7995 0 2037 138 0 16 chr15 40360354 40360659 -45335095 + AluSx SINE Alu 1 300 -12 2129 128 0 10 chr15 40360667 40360955 -45334799 + AluSx SINE Alu 1 287 -25 441 0 0 0 chr15 40360955 40361004 -45334750 + (CA)n Simple_repeat Simple_repeat 2 50 0 2129 128 0 10 chr15 40361004 40361028 -45334726 + AluSx SINE Alu 287 310 -2 32 75 0 0 chr15 40362176 40362243 -45333511 + AT_rich Low_complexity Low_complexity 1 67 0 439 321 15 23 chr15 40363743 40363874 -45331880 - MIR SINE MIR -126 136 7 260 301 27 0 chr15 40363893 40363966 -45331788 + MIR3 SINE MIR 104 178 -30 21 57 0 0 chr15 40365621 40365656 -45330098 + AT_rich Low_complexity Low_complexity 1 35 0 412 327 124 26 chr15 40365789 40366055 -45329699 - L3 LINE CR1 -3 1574 1283 317 242 178 68 chr15 40366052 40366316 -45329438 + L2 LINE L2 3020 3312 -1 * 323 337 58 23 chr15 40366339 40366511 -45329243 - L3 LINE CR1 -366 1211 1034 21 71 0 0 chr15 40367108 40367150 -45328604 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr15 40367457 40367479 -45328275 + AT_rich Low_complexity Low_complexity 1 22 0 43 35 0 0 chr15 40367671 40367728 -45328026 + AT_rich Low_complexity Low_complexity 1 57 0 1137 152 45 0 chr15 40367728 40367926 -45327828 - MER2 DNA MER2_type -138 207 1 817 258 0 28 chr15 40368384 40368601 -45327153 + MIR SINE MIR 11 221 -41 21 36 0 0 chr15 40368605 40368633 -45327121 + AT_rich Low_complexity Low_complexity 1 28 0 1068 235 107 63 chr15 40369333 40369827 -45325927 + MLT1H1 LTR MaLR 40 555 0 1228 163 0 5 chr15 40369918 40370108 -45325646 + AluJb SINE Alu 1 189 -123 271 314 35 77 chr15 40370170 40370339 -45325415 - L2 LINE L2 -217 3096 2935 335 293 123 0 chr15 40370376 40370482 -45325272 + L2 LINE L2 3195 3313 0 1051 243 108 52 chr15 40370484 40370653 -45325101 - L2 LINE L2 -429 2885 2727 2139 107 4 0 chr15 40370653 40370965 -45324789 - AluSx SINE Alu 0 313 1 1051 243 108 52 chr15 40370965 40371201 -45324553 - L2 LINE L2 -587 2727 2456 288 211 88 26 chr15 40371355 40371469 -45324285 - L1ME4a LINE L1 -1 6120 6000 219 226 0 0 chr15 40371853 40371906 -45323848 + (TG)n Simple_repeat Simple_repeat 2 54 0 479 219 23 55 chr15 40372411 40372539 -45323215 - L2 LINE L2 0 3313 3190 223 253 95 42 chr15 40372653 40372748 -45323006 - MIR SINE MIR -57 151 52 428 251 110 47 chr15 40374162 40374353 -45321401 + L2 LINE L2 3084 3286 -27 401 271 15 0 chr15 40374520 40374653 -45321101 + L1M4 LINE L1 2971 3105 -3041 5777 174 32 35 chr15 40374766 40376097 -45319657 + L1MA4 LINE L1 3510 4841 -2724 2448 110 46 7 chr15 40376097 40376512 -45319242 + L1MA5A LINE L1 5855 6287 -10 5777 174 32 35 chr15 40376512 40376667 -45319087 + L1MA4 LINE L1 4841 4995 -2570 40454 37 22 3 chr15 40376668 40382706 -45313048 + L1PA3 LINE L1 1 6155 0 6912 163 52 34 chr15 40382732 40383475 -45312279 + L1MA4 LINE L1 4978 5707 -2012 1711 164 7 40 chr15 40383475 40383779 -45311975 + AluJb SINE Alu 1 294 -18 6912 163 52 34 chr15 40383779 40385694 -45310060 + L1MA4 LINE L1 5707 7708 -11 301 304 29 0 chr15 40385815 40385917 -45309837 - L1M4c LINE L1 -3911 2473 2369 202 290 0 58 chr15 40385918 40385987 -45309767 + MIR3 SINE MIR 3 67 -141 288 308 75 9 chr15 40387095 40387202 -45308552 + L3 LINE CR1 1453 1566 -11 883 198 19 0 chr15 40388188 40388350 -45307404 - FAM SINE Alu -10 165 1 452 286 149 26 chr15 40388430 40388584 -45307170 + MER5A DNA MER1_type 11 183 -6 264 231 0 0 chr15 40388730 40388808 -45306946 + (TA)n Simple_repeat Simple_repeat 1 78 0 1204 192 38 21 chr15 40389065 40389356 -45306398 + MER46C DNA MER2_type 1 296 -42 2156 101 7 3 chr15 40389651 40389938 -45305816 - AluSg SINE Alu -22 288 1 1272 36 0 24 chr15 40390119 40390274 -45305480 - L1PA5 LINE L1 -297 5858 5706 2504 31 0 0 chr15 40390274 40390564 -45305190 + L1PA5 LINE L1 5856 6147 -7 1272 36 0 24 chr15 40390564 40390575 -45305179 - L1PA4 LINE L1 -449 5706 5696 23 0 0 0 chr15 40390575 40390598 -45305156 + AT_rich Low_complexity Low_complexity 1 23 0 34 42 0 0 chr15 40391008 40391056 -45304698 + AT_rich Low_complexity Low_complexity 1 48 0 217 274 48 60 chr15 40391185 40391269 -45304485 + MIR SINE MIR 64 146 -62 199 333 65 9 chr15 40391615 40391723 -45304031 + L2 LINE L2 2934 3047 -225 274 326 0 21 chr15 40391784 40391879 -45303875 + MIR3 SINE MIR 113 205 -3 23 33 0 0 chr15 40392524 40392554 -45303200 + AT_rich Low_complexity Low_complexity 1 30 0 2234 44 7 0 chr15 40393075 40393349 -45302405 - L1PA3 LINE L1 0 6155 5880 2781 19 0 2 chr15 40393349 40393716 -45302038 + L1PA8A LINE L1 5379 5739 -392 204 310 60 30 chr15 40394605 40394705 -45301049 + MIR SINE MIR 32 134 -128 24 91 0 0 chr15 40394873 40394939 -45300815 + AT_rich Low_complexity Low_complexity 1 66 0 1137 234 0 4 chr15 40395285 40395511 -45300243 + MIR SINE MIR 17 241 -21 463 211 24 89 chr15 40396015 40396138 -45299616 - MIR SINE MIR -70 192 78 186 50 75 0 chr15 40398126 40398166 -45297588 + (TA)n Simple_repeat Simple_repeat 2 44 0 3686 42 4 0 chr15 40398917 40399372 -45296382 + L1PA4 LINE L1 5699 6155 0 1351 183 7 39 chr15 40399786 40400071 -45295683 + AluJb SINE Alu 24 299 -13 269 185 15 0 chr15 40400075 40400140 -45295614 + A-rich Low_complexity Low_complexity 5 70 0 2380 78 0 16 chr15 40402739 40403046 -45292708 - AluSg1 SINE Alu -7 302 1 22 0 0 0 chr15 40404774 40404796 -45290958 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 40405535 40405560 -45290194 + AT_rich Low_complexity Low_complexity 1 25 0 193 288 0 41 chr15 40405796 40405869 -45289885 - MIR SINE MIR -119 143 74 2280 74 0 3 chr15 40405905 40406217 -45289537 - AluY SINE Alu 0 311 1 228 240 120 64 chr15 40408544 40408634 -45287120 + MIR SINE MIR 20 121 -141 2268 60 0 0 chr15 40408634 40408924 -45286830 - AluY SINE Alu 0 306 17 228 240 120 64 chr15 40408924 40408957 -45286797 + MIR SINE MIR 121 151 -111 408 226 134 63 chr15 40409412 40409651 -45286103 - L2 LINE L2 -99 3214 2959 346 243 0 0 chr15 40409658 40409732 -45286022 + MER81 DNA DNA 1 74 -40 315 216 72 0 chr15 40409741 40409852 -45285902 - L2 LINE L2 -357 2957 2839 878 190 147 9 chr15 40410864 40411075 -45284679 + MIR SINE MIR 23 262 0 221 244 53 94 chr15 40410999 40411171 -45284583 - MIR SINE MIR -57 205 41 * 318 243 12 110 chr15 40411178 40411351 -45284403 - MER5A DNA MER1_type -29 160 5 189 213 0 0 chr15 40412094 40412141 -45283613 + GA-rich Low_complexity Low_complexity 2 48 0 2425 67 0 0 chr15 40412572 40412869 -45282885 - AluY SINE Alu -14 297 1 1017 226 45 11 chr15 40412886 40413173 -45282581 - L1ME2 LINE L1 -49 6115 5819 1846 131 38 6 chr15 40413173 40413493 -45282261 + MLT1A1 LTR MaLR 1 330 -35 2146 126 3 0 chr15 40413494 40413788 -45281966 - AluJb SINE Alu -16 296 2 952 255 50 0 chr15 40415287 40415585 -45280169 + LTR16C LTR ERVL 179 491 0 557 352 67 6 chr15 40415599 40415914 -45279840 - L3 LINE CR1 -353 1224 891 839 304 50 11 chr15 40415914 40416197 -45279557 - L3 LINE CR1 -853 724 431 1576 197 18 18 chr15 40416433 40416773 -45278981 - MER58B DNA MER1_type -1 340 1 197 264 245 0 chr15 40416788 40416894 -45278860 + MIR SINE MIR 20 151 -111 183 382 49 16 chr15 40417101 40417224 -45278530 - L3 LINE CR1 -1413 164 38 2111 166 11 3 chr15 40417379 40417741 -45278013 + MLT1A1 LTR MaLR 1 365 0 2248 191 27 0 chr15 40417890 40418336 -45277418 + MLT2C2 LTR ERVL 3 460 -4 2343 116 16 35 chr15 40419001 40419372 -45276382 - THE1B LTR MaLR 0 364 1 208 311 232 20 chr15 40419405 40419556 -45276198 - L3 LINE CR1 -3 1574 1392 365 304 106 41 chr15 40420384 40420940 -45274814 + L1MC4a LINE L1 5258 5849 -1959 533 254 0 9 chr15 40421653 40421767 -45273987 - MER81 DNA DNA 0 114 2 523 266 18 41 chr15 40422535 40422704 -45273050 + MER5B DNA MER1_type 5 169 -9 1304 147 67 29 chr15 40422731 40422969 -45272785 - AluJb SINE Alu -65 247 1 254 308 33 25 chr15 40423080 40423200 -45272554 + MIR SINE MIR 138 258 -4 394 228 50 0 chr15 40424682 40424783 -45270971 + MER105 DNA DNA 31 136 -68 204 320 35 36 chr15 40425860 40426001 -45269753 - MIR SINE MIR -59 149 3 280 308 11 0 chr15 40427030 40427121 -45268633 - MIR SINE MIR -62 200 109 212 164 0 109 chr15 40427270 40427325 -45268429 + L2 LINE L2 3265 3313 0 940 123 7 7 chr15 40428201 40428347 -45267407 - AluJb SINE Alu -30 282 137 215 353 92 29 chr15 40428836 40429043 -45266711 - L3b LINE CR1 -23 1560 1341 1983 110 20 7 chr15 40430606 40430898 -45264856 + AluSx SINE Alu 1 296 -16 384 333 48 0 chr15 40431118 40431244 -45264510 - MIR SINE MIR -33 229 98 24 32 0 0 chr15 40431740 40431771 -45263983 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 40432066 40432098 -45263656 + AT_rich Low_complexity Low_complexity 1 32 0 285 272 152 0 chr15 40432228 40432320 -45263434 + L2 LINE L2 3163 3268 -4 203 277 92 57 chr15 40433827 40433968 -45261786 + MIR3 SINE MIR 42 187 -21 303 338 44 49 chr15 40434061 40434265 -45261489 - HAL1 LINE L1 -1789 718 516 329 136 15 0 chr15 40435087 40435153 -45260601 + CT-rich Low_complexity Low_complexity 4 70 0 1485 164 109 0 chr15 40435208 40435482 -45260272 - AluJo SINE Alu -8 304 1 454 277 118 27 chr15 40435714 40436253 -45259501 - L1MC/D LINE L1 -774 5355 5147 292 299 61 24 chr15 40436264 40436428 -45259326 - L1MC/D LINE L1 -1070 5059 4890 638 146 58 22 chr15 40436455 40436592 -45259162 - L1MB5 LINE L1 -8 6166 6025 219 69 0 0 chr15 40436622 40436651 -45259103 + (T)n Simple_repeat Simple_repeat 1 29 0 947 112 35 0 chr15 40436658 40436801 -45258953 - L1PA10 LINE L1 -112 6056 5909 1575 194 41 0 chr15 40436805 40437124 -45258630 - L1MB5 LINE L1 -142 6032 5701 254 204 19 0 chr15 40437150 40437204 -45258550 + MIR SINE MIR 178 232 -30 663 283 52 31 chr15 40437252 40437673 -45258081 - L1MC/D LINE L1 -1299 4830 4401 2040 285 118 32 chr15 40437746 40438368 -45257386 - L1MEd LINE L1 -762 1728 1161 2486 75 0 3 chr15 40438368 40438675 -45257079 - AluSc SINE Alu -3 306 1 2040 285 118 32 chr15 40438675 40439545 -45256209 - L1MEd LINE L1 -1329 1161 16 829 290 126 34 chr15 40439823 40440379 -45255375 + MLT1L LTR MaLR 1 607 -8 336 245 77 84 chr15 40440867 40441022 -45254732 + MIR SINE MIR 59 212 -50 295 226 16 0 chr15 40441698 40441760 -45253994 - MIR3 SINE MIR -48 160 98 313 301 57 100 chr15 40441970 40442319 -45253435 + L3 LINE CR1 1041 1374 -203 221 275 193 28 chr15 40443707 40443816 -45251938 + MIR SINE MIR 16 142 -66 992 201 91 0 chr15 40443835 40444034 -45251720 - MER58A DNA MER1_type -1 223 7 1110 230 54 45 chr15 40444756 40444836 -45250918 - MER46C DNA MER2_type 0 338 260 2159 128 16 0 chr15 40444836 40445141 -45250613 + AluSg SINE Alu 1 310 0 1110 230 54 45 chr15 40445141 40445395 -45250359 - MER46C DNA MER2_type -78 260 1 285 289 41 21 chr15 40445855 40445952 -45249802 + MER5B DNA MER1_type 1 99 -79 745 282 27 48 chr15 40446195 40446489 -45249265 - LTR16B LTR ERVL -138 326 39 2144 97 3 41 chr15 40448012 40448331 -45247423 + AluSg SINE Alu 1 307 -3 183 234 36 108 chr15 40449779 40449890 -45245864 + MER5C DNA MER1_type 61 163 -161 23 0 0 0 chr15 40450004 40450027 -45245727 + AT_rich Low_complexity Low_complexity 1 23 0 324 70 0 0 chr15 40450925 40450968 -45244786 + (T)n Simple_repeat Simple_repeat 1 43 0 422 307 16 0 chr15 40452171 40452298 -45243456 - MER20B DNA MER1_type -620 163 35 501 17 0 0 chr15 40452576 40452634 -45243120 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 520 185 169 8 chr15 40452760 40452890 -45242864 + MLT1E1 LTR MaLR 1 151 -503 498 177 186 18 chr15 40452996 40453109 -45242645 + MLT1E1 LTR MaLR 304 435 -191 230 150 0 0 chr15 40453106 40453146 -45242608 + MLT1E1 LTR MaLR 585 624 0 * 276 272 88 9 chr15 40453150 40453264 -45242490 + L2 LINE L2 2628 2750 -564 1437 195 35 11 chr15 40453347 40453634 -45242120 + AluJo SINE Alu 1 294 -18 193 295 51 26 chr15 40453659 40453737 -45242017 + L2 LINE L2 2744 2823 -491 933 136 6 19 chr15 40454046 40454208 -45241546 - AluSx SINE Alu -152 160 1 822 256 33 0 chr15 40454235 40454450 -45241304 + MER58A DNA MER1_type 3 224 0 630 182 0 61 chr15 40454502 40454634 -45241120 + FLAM_A SINE Alu 4 127 -6 2122 148 0 0 chr15 40454762 40455073 -45240681 + AluSx SINE Alu 1 311 -1 270 63 32 63 chr15 40455097 40455160 -45240594 + (GGAAA)n Simple_repeat Simple_repeat 3 63 0 444 283 54 2 chr15 40456098 40456250 -45239504 + MIR3 SINE MIR 51 205 -3 657 191 0 33 chr15 40458474 40458657 -45237097 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 238 133 0 0 chr15 40458661 40458706 -45237048 + L1MC4 LINE L1 6659 6703 -1339 267 189 0 0 chr15 40458706 40458759 -45236995 + (TATG)n Simple_repeat Simple_repeat 1 53 0 365 240 125 31 chr15 40461994 40462090 -45233664 + L2 LINE L2 3207 3311 -2 1690 91 0 0 chr15 40462121 40462341 -45233413 - AluSg/x SINE Alu 0 312 93 212 300 36 91 chr15 40462402 40462512 -45233242 + L2 LINE L2 3187 3290 -23 836 130 15 0 chr15 40462814 40462945 -45232809 + MER5A DNA MER1_type 57 189 0 4298 164 36 57 chr15 40463060 40464694 -45231060 - L1MB7 LINE L1 -8 6176 4581 404 339 26 0 chr15 40465301 40465416 -45230338 + MIR3 SINE MIR 51 168 -40 6607 122 6 13 chr15 40466442 40467497 -45228257 + L1MA5 LINE L1 5254 6300 0 27 29 0 0 chr15 40467648 40467682 -45228072 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr15 40467972 40468011 -45227743 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 40468597 40468618 -45227136 + AT_rich Low_complexity Low_complexity 1 21 0 188 190 0 103 chr15 40469171 40469229 -45226525 - MIR SINE MIR 0 262 211 317 315 27 9 chr15 40469238 40469349 -45226405 + MIR SINE MIR 31 143 -119 820 169 0 0 chr15 40469356 40469480 -45226274 + FLAM_C SINE Alu 1 124 -19 302 314 91 34 chr15 40470581 40470877 -45224877 - L1ME4a LINE L1 -224 5897 5585 24 91 0 0 chr15 40471502 40471568 -45224186 + AT_rich Low_complexity Low_complexity 1 66 0 1623 160 38 51 chr15 40476229 40476542 -45219212 - AluJb SINE Alu -3 309 1 38 22 0 0 chr15 40477057 40477102 -45218652 + AT_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr15 40477127 40477166 -45218588 + AT_rich Low_complexity Low_complexity 1 39 0 9147 195 57 41 chr15 40477694 40479915 -45215839 - Cheshire DNA MER1_type -1 2419 1 1492 229 80 7 chr15 40480066 40480529 -45215225 + L1MC2 LINE L1 3929 4425 -1721 372 240 70 3 chr15 40480558 40480687 -45215067 + L1MC2 LINE L1 4883 5016 -1130 1301 165 0 9 chr15 40480687 40480905 -45214849 + AluJb SINE Alu 76 291 -21 5596 177 27 19 chr15 40480931 40482231 -45213523 + L1MC2 LINE L1 5009 6320 -24 323 323 10 0 chr15 40482355 40482454 -45213300 + L1M4 LINE L1 3689 3788 -2358 1387 176 88 0 chr15 40482488 40482760 -45212994 - MER46B DNA MER2_type -60 176 6 286 195 57 0 chr15 40482825 40482913 -45212841 + L1ME1 LINE L1 5818 5914 -250 * 931 237 29 64 chr15 40482894 40483240 -45212514 + L1ME1 LINE L1 5826 6159 -7 30 27 0 0 chr15 40483773 40483810 -45211944 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr15 40483830 40483865 -45211889 + AT_rich Low_complexity Low_complexity 1 35 0 8301 122 5 29 chr15 40485803 40486474 -45209280 + HSMAR2 DNA Mariner 1 626 -676 2351 103 0 0 chr15 40486474 40486786 -45208968 + AluSx SINE Alu 1 312 0 8301 122 5 29 chr15 40486786 40487447 -45208307 + HSMAR2 DNA Mariner 626 1301 -1 2413 73 0 10 chr15 40488151 40488465 -45207289 + AluY SINE Alu 1 311 0 747 131 15 8 chr15 40489573 40489703 -45206051 + L1MB2 LINE L1 6038 6168 -3 21 0 0 0 chr15 40489703 40489724 -45206030 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 40489992 40490013 -45205741 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr15 40490132 40490168 -45205586 + AT_rich Low_complexity Low_complexity 1 36 0 27 81 0 0 chr15 40491589 40491651 -45204103 + AT_rich Low_complexity Low_complexity 1 62 0 2160 116 3 0 chr15 40491829 40492130 -45203624 - AluSx SINE Alu -10 302 1 390 154 0 0 chr15 40492645 40492723 -45203031 + (CA)n Simple_repeat Simple_repeat 1 78 0 427 279 113 43 chr15 40492847 40493616 -45202138 + L1ME2 LINE L1 1262 1981 -4559 583 263 64 34 chr15 40493616 40493852 -45201902 + L1ME2 LINE L1 4916 5158 -1382 2025 144 16 33 chr15 40493852 40494220 -45201534 - THE1B LTR MaLR 0 364 3 2953 197 76 19 chr15 40494221 40494947 -45200807 + L1ME2 LINE L1 5791 6557 -1 1727 240 94 89 chr15 40494957 40495686 -45200068 + L1ME3A LINE L1 4423 5147 -1023 1770 137 13 33 chr15 40495686 40495985 -45199769 + AluSx SINE Alu 5 297 -15 1727 240 94 89 chr15 40495985 40496997 -45198757 + L1ME3A LINE L1 5147 6170 0 2169 104 0 0 chr15 40497102 40497390 -45198364 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr15 40498379 40498402 -45197352 + AT_rich Low_complexity Low_complexity 1 23 0 585 184 32 95 chr15 40499314 40499504 -45196250 + MER5B DNA MER1_type 1 178 0 1627 6 0 0 chr15 40549744 40549926 -45145828 - L1PA3 LINE L1 -277 5878 5697 1583 39 0 0 chr15 40549922 40550125 -45145629 + L1P LINE L1 5024 5226 -920 * 370 213 0 0 chr15 40550661 40550741 -45145013 + MIR SINE MIR 151 230 -32 242 284 15 0 chr15 40550910 40550977 -45144777 + L2 LINE L2 1853 1920 -1394 296 323 53 23 chr15 40551543 40551676 -45144078 + MIR3 SINE MIR 10 146 -62 325 230 42 67 chr15 40551753 40551918 -45143836 + MER103 DNA DNA 3 163 -3 186 264 0 0 chr15 40552002 40552055 -45143699 + L2 LINE L2 3261 3313 0 333 0 0 0 chr15 40553148 40553185 -45142569 + (TG)n Simple_repeat Simple_repeat 2 38 0 2218 110 5 40 chr15 40553647 40554047 -45141707 + L1HS LINE L1 5769 6154 -1 207 0 0 0 chr15 40554063 40554086 -45141668 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr15 40554360 40554381 -45141373 + AT_rich Low_complexity Low_complexity 1 21 0 22616 34 3 7 chr15 40554381 40557948 -45137806 - L1PA5 LINE L1 -8 6146 2587 309 109 0 0 chr15 40558046 40558092 -45137662 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr15 40558137 40558167 -45137587 + AT_rich Low_complexity Low_complexity 1 30 0 1808 145 31 42 chr15 40559028 40559387 -45136367 + L1PB4 LINE L1 5788 6142 -14 1023 149 98 0 chr15 40560051 40560245 -45135509 - L1MA7 LINE L1 -436 5855 5643 871 148 0 7 chr15 40560245 40560387 -45135367 - Tigger7 DNA MER2_type 0 2487 2347 751 155 8 0 chr15 40560387 40560516 -45135238 - L1MA7 LINE L1 -654 5637 5508 23 33 0 0 chr15 40561457 40561487 -45134267 + AT_rich Low_complexity Low_complexity 1 30 0 296 339 64 46 chr15 40562613 40563080 -45132674 + L2 LINE L2 2594 3062 -210 5923 162 104 21 chr15 40563860 40565153 -45130601 - Charlie1a DNA MER1_type -1 1454 54 276 324 81 18 chr15 40566181 40566292 -45129462 + L2 LINE L2 3154 3271 -1 878 263 95 0 chr15 40567169 40567401 -45128353 + MIR SINE MIR 6 259 -3 1133 224 150 59 chr15 40567824 40568383 -45127371 + HAL1 LINE L1 1490 2099 -408 801 121 0 0 chr15 40568384 40568500 -45127254 + MSTB LTR MaLR 1 116 -310 1199 139 27 5 chr15 40568501 40568688 -45127066 + MSTB LTR MaLR 236 426 0 418 277 153 29 chr15 40568705 40569052 -45126702 + HAL1 LINE L1 2112 2501 -6 262 297 18 18 chr15 40571832 40571943 -45123811 + GA-rich Low_complexity Low_complexity 3 113 0 315 320 58 13 chr15 40572028 40572184 -45123570 + L1ME LINE L1 5558 5720 -401 23 33 0 0 chr15 40573350 40573380 -45122374 + AT_rich Low_complexity Low_complexity 1 30 0 246 309 62 31 chr15 40573393 40573555 -45122199 - MIR SINE MIR -72 190 24 265 130 13 65 chr15 40575249 40575326 -45120428 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 641 54 27 59 chr15 40575327 40575513 -45120241 + (TA)n Simple_repeat Simple_repeat 1 180 0 280 123 97 18 chr15 40575513 40575627 -45120127 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 200 278 113 87 chr15 40575707 40575822 -45119932 + L2 LINE L2 3155 3272 0 3584 164 34 28 chr15 40576247 40576403 -45119351 + L1PB4 LINE L1 5007 5161 -995 1744 183 7 0 chr15 40576403 40576687 -45119067 + AluJb SINE Alu 1 286 -26 3584 164 34 28 chr15 40576687 40577494 -45118260 + L1PB4 LINE L1 5161 5959 -197 7075 85 16 2 chr15 40577564 40578601 -45117153 + L1MA3 LINE L1 5254 6305 0 693 234 5 21 chr15 40578616 40578808 -45116946 + L1PB4 LINE L1 5966 6154 -2 31 0 0 0 chr15 40578810 40578841 -45116913 + AT_rich Low_complexity Low_complexity 1 31 0 2266 92 3 7 chr15 40579629 40579924 -45115830 + AluSq SINE Alu 1 294 -19 207 133 0 44 chr15 40580038 40580083 -45115671 + (CAAAT)n Simple_repeat Simple_repeat 2 44 0 38 30 0 30 chr15 40580852 40580871 -45114883 + AT_rich Low_complexity Low_complexity 1 19 -46 1125 56 0 0 chr15 40580871 40581015 -45114739 + L1PA5 LINE L1 6004 6147 -7 38 30 0 30 chr15 40581015 40581062 -45114692 + AT_rich Low_complexity Low_complexity 19 65 0 208 73 0 122 chr15 40581261 40581302 -45114452 - L2 LINE L2 -15 3298 3263 2014 121 3 10 chr15 40581416 40581714 -45114040 + AluSx SINE Alu 1 296 -16 200 270 0 0 chr15 40583272 40583309 -45112445 - L2 LINE L2 -15 3298 3262 517 56 14 0 chr15 40583370 40583441 -45112313 + MADE1 DNA Mariner 9 80 0 216 216 0 0 chr15 40583865 40583916 -45111838 + GA-rich Low_complexity Low_complexity 1 51 0 28 0 0 0 chr15 40585185 40585213 -45110541 + AT_rich Low_complexity Low_complexity 1 28 0 2052 103 6 48 chr15 40585266 40585578 -45110176 + AluSg SINE Alu 1 299 -11 240 214 0 0 chr15 40586174 40586230 -45109524 + T-rich Low_complexity Low_complexity 1 56 0 10749 23 2 0 chr15 40586231 40588260 -45107494 - L1PA4 LINE L1 -3 6152 4119 1793 156 0 35 chr15 40588635 40588949 -45106805 + AluSq SINE Alu 1 303 -10 326 276 55 61 chr15 40589454 40589617 -45106137 - MIR SINE MIR -50 212 51 574 339 6 12 chr15 40590033 40590201 -45105553 - MIR3 SINE MIR -21 187 21 2388 73 13 7 chr15 40590517 40590820 -45104934 + AluY SINE Alu 1 305 -6 336 312 87 23 chr15 40591716 40591889 -45103865 - MIR3 SINE MIR -9 199 16 2122 55 14 4 chr15 40592595 40592870 -45102884 + L1PA8 LINE L1 5894 6171 -1 277 250 105 0 chr15 40593058 40593134 -45102620 - MIR SINE MIR -114 148 65 2133 82 0 49 chr15 40593357 40593663 -45102091 - AluY SINE Alu -20 291 1 840 210 95 5 chr15 40593987 40594187 -45101567 - MER20 DNA MER1_type -1 218 1 7885 53 12 5 chr15 40594273 40595272 -45100482 + LTR13 LTR ERVK 2 1007 0 180 214 24 0 chr15 40596002 40596044 -45099710 - MIR3 SINE MIR -36 172 130 21 57 0 0 chr15 40596207 40596242 -45099512 + AT_rich Low_complexity Low_complexity 1 35 0 251 143 122 0 chr15 40596242 40596291 -45099463 - MIR SINE MIR -73 135 81 939 200 29 0 chr15 40596629 40596834 -45098920 - MER2 DNA MER2_type -134 211 1 989 187 0 0 chr15 40596897 40597068 -45098686 + FRAM SINE Alu 1 171 -5 840 156 92 76 chr15 40597112 40597426 -45098328 - MER33 DNA MER1_type 0 324 6 864 142 0 0 chr15 40599057 40599222 -45096532 - FRAM SINE Alu 0 176 12 299 308 50 44 chr15 40600050 40600232 -45095522 + L2 LINE L2 2575 2757 -557 391 198 45 81 chr15 40600687 40600798 -45094956 - MIR SINE MIR -76 186 80 603 231 46 40 chr15 40601586 40601759 -45093995 - MIR3 SINE MIR -15 193 20 343 240 185 7 chr15 40602351 40602497 -45093257 - MIR SINE MIR 0 262 91 1891 165 10 0 chr15 40602725 40603022 -45092732 + AluJb SINE Alu 1 300 -12 1826 174 0 7 chr15 40603097 40603390 -45092364 + AluJb SINE Alu 1 291 -21 309 218 11 46 chr15 40603689 40603776 -45091978 + L2 LINE L2 3188 3271 -1 451 294 128 5 chr15 40603826 40604030 -45091724 - MIR SINE MIR -30 232 4 398 257 97 14 chr15 40604165 40604309 -45091445 + MIR SINE MIR 70 225 -37 520 193 44 15 chr15 40604682 40604817 -45090937 - L1ME3 LINE L1 0 6162 6024 223 289 62 31 chr15 40604979 40605076 -45090678 - MIR SINE MIR -46 216 117 478 297 142 77 chr15 40605934 40606809 -45088945 + L1M2 LINE L1 751 1426 -5423 246 233 14 41 chr15 40607297 40607370 -45088384 - MIR3 SINE MIR -1 207 137 340 194 175 19 chr15 40607444 40607547 -45088207 - MIR SINE MIR -72 136 18 1848 135 4 4 chr15 40607608 40607889 -45087865 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 40607892 40607912 -45087842 + (TAA)n Simple_repeat Simple_repeat 2 21 0 311 240 380 0 chr15 40607915 40608036 -45087718 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 40608519 40608547 -45087207 + AT_rich Low_complexity Low_complexity 1 28 0 509 316 6 0 chr15 40608603 40608771 -45086983 - FRAM SINE Alu -4 172 4 46 83 0 0 chr15 40608784 40608893 -45086861 + AT_rich Low_complexity Low_complexity 1 109 0 317 286 63 111 chr15 40608994 40609372 -45086382 + L1M2 LINE L1 756 1115 -5734 246 233 14 41 chr15 40609866 40609939 -45085815 - MIR3 SINE MIR -1 207 137 340 194 175 19 chr15 40610013 40610116 -45085638 - MIR SINE MIR -72 136 18 1761 136 11 4 chr15 40610177 40610456 -45085298 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 40610459 40610479 -45085275 + (TAA)n Simple_repeat Simple_repeat 2 21 0 311 240 380 0 chr15 40610482 40610603 -45085151 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 40611086 40611114 -45084640 + AT_rich Low_complexity Low_complexity 1 28 0 841 233 6 0 chr15 40611170 40611350 -45084404 - FRAM SINE Alu -4 172 1 334 267 75 86 chr15 40612102 40612156 -45083598 - MIR3 SINE MIR -1 207 154 2173 90 7 7 chr15 40612156 40612467 -45083287 + AluSg SINE Alu 2 312 0 334 267 75 86 chr15 40612467 40612598 -45083156 - MIR3 SINE MIR -54 154 23 635 219 52 30 chr15 40613583 40613816 -45081938 - L1ME2 LINE L1 -172 5992 5755 * 941 198 53 22 chr15 40613809 40614029 -45081725 - L1MCb LINE L1 -4036 2528 2293 1349 108 85 0 chr15 40614029 40614241 -45081513 - MER30 DNA MER1_type 0 230 1 941 198 53 22 chr15 40614241 40614339 -45081415 - L1MCb LINE L1 -4271 2293 2200 * 3799 222 98 20 chr15 40614337 40615725 -45080029 - L1MCb LINE L1 -4851 1194 4 1367 201 4 11 chr15 40615795 40616074 -45079680 - L1ME2 LINE L1 -395 5769 5493 560 155 0 19 chr15 40616105 40616208 -45079546 + Tigger5 DNA MER2_type 1 101 -2222 2165 107 7 13 chr15 40616391 40616699 -45079055 + AluSg SINE Alu 1 306 -4 622 282 40 19 chr15 40617084 40617316 -45078438 + MIR SINE MIR 23 256 -6 2246 88 0 0 chr15 40617550 40617865 -45077889 - AluSx SINE Alu 0 315 1 184 347 202 5 chr15 40617866 40618059 -45077695 - MIR SINE MIR -9 253 23 281 319 178 13 chr15 40618695 40618738 -45077016 - MIR3 SINE MIR -10 198 163 2132 118 3 16 chr15 40618738 40619043 -45076711 - AluSc SINE Alu -8 301 1 281 319 178 13 chr15 40619043 40619156 -45076598 - MIR3 SINE MIR -45 163 16 26 64 0 0 chr15 40619333 40619380 -45076374 + AT_rich Low_complexity Low_complexity 1 47 0 2222 129 0 3 chr15 40619493 40619845 -45075909 - AluSx SINE Alu 0 351 1 220 233 0 50 chr15 40620626 40620686 -45075068 - L2 LINE L2 -13 3300 3244 412 290 152 0 chr15 40620701 40620839 -45074915 + MIR3 SINE MIR 2 160 -48 310 276 29 19 chr15 40620844 40620949 -45074805 + MER117 DNA MER1_type 6 111 -86 195 347 0 28 chr15 40621229 40621301 -45074453 - L2 LINE L2 -208 3064 2995 26 0 0 0 chr15 40621341 40621367 -45074387 + AT_rich Low_complexity Low_complexity 1 26 0 319 272 95 45 chr15 40621480 40621625 -45074129 - MIR SINE MIR -62 146 45 516 133 80 66 chr15 40622096 40622247 -45073507 - LTR33A LTR ERVL -9 514 362 271 311 153 56 chr15 40622286 40622394 -45073360 - L2 LINE L2 -40 3273 3177 2155 125 7 0 chr15 40622394 40622691 -45073063 + AluSq SINE Alu 1 299 -14 271 311 153 56 chr15 40622691 40622903 -45072851 - L2 LINE L2 -136 3177 2922 213 220 0 0 chr15 40623645 40623695 -45072059 + (CAT)n Simple_repeat Simple_repeat 3 52 0 7325 90 4 16 chr15 40624947 40626017 -45069737 - MER11C LTR ERVK -14 1057 1 826 208 12 18 chr15 40626116 40626284 -45069470 - FAM SINE Alu -4 171 5 1573 281 24 24 chr15 40626418 40627092 -45068662 - L2 LINE L2 -114 3199 2536 473 315 22 22 chr15 40627833 40628011 -45067743 + MER117 DNA MER1_type 4 181 -16 476 201 238 6 chr15 40628293 40628457 -45067297 - MIR SINE MIR -13 249 48 662 290 17 34 chr15 40629246 40629484 -45066270 + MIR SINE MIR 29 262 0 378 0 0 0 chr15 40629625 40629667 -45066087 + (TC)n Simple_repeat Simple_repeat 1 42 0 244 287 30 10 chr15 40629784 40629885 -45065869 - MLT1K LTR MaLR -320 268 166 24 32 0 0 chr15 40630188 40630219 -45065535 + AT_rich Low_complexity Low_complexity 1 31 0 2532 132 42 5 chr15 40630978 40631386 -45064368 + MSTA LTR MaLR 6 428 0 1132 220 111 10 chr15 40631386 40631776 -45063978 - L1MD2 LINE L1 -77 6089 5669 337 260 8 24 chr15 40631774 40631897 -45063857 + L1ME3A LINE L1 6043 6163 -7 * 2099 111 3 10 chr15 40632148 40632437 -45063317 - AluSx SINE Alu -20 292 6 595 233 16 8 chr15 40633918 40634047 -45061707 + LTR67 LTR ERVL 428 557 0 276 282 24 117 chr15 40634869 40635075 -45060679 + MER91B DNA MER1_type 1 187 -3 1607 241 91 22 chr15 40635534 40635998 -45059756 + MER20B DNA MER1_type 1 496 -287 1984 115 17 0 chr15 40636129 40636417 -45059337 + AluSx SINE Alu 1 293 -19 2320 92 0 7 chr15 40636942 40637248 -45058506 - AluY SINE Alu -7 304 1 21 0 0 0 chr15 40637254 40637275 -45058479 + AT_rich Low_complexity Low_complexity 1 21 0 694 238 32 0 chr15 40637297 40637482 -45058272 + MER20B DNA MER1_type 509 699 -84 2265 93 3 0 chr15 40637482 40637771 -45057983 - AluSc SINE Alu -17 292 3 712 256 107 0 chr15 40638296 40638530 -45057224 - LTR33A LTR ERVL 0 523 265 773 161 0 44 chr15 40638828 40638965 -45056789 - FLAM_A SINE Alu -2 131 1 294 274 95 37 chr15 40639725 40639915 -45055839 + MER112 DNA MER1_type 1 201 -59 8043 34 0 0 chr15 40640600 40642198 -45053556 + L1PA4 LINE L1 4557 6155 0 229 333 0 26 chr15 40642352 40642430 -45053324 - MIR SINE MIR -150 112 37 479 345 80 26 chr15 40643161 40643425 -45052329 - MLT1K LTR MaLR -284 304 27 254 184 122 0 chr15 40643619 40643668 -45052086 + MER69 DNA AcHobo 2 56 -2470 * 1929 171 56 63 chr15 40643656 40643756 -45051998 + MER69 DNA AcHobo 2051 2150 -376 2101 109 25 0 chr15 40643756 40644039 -45051715 + AluSp SINE Alu 1 290 -23 1929 171 56 63 chr15 40644039 40644417 -45051337 + MER69 DNA AcHobo 2150 2526 0 313 299 92 24 chr15 40644475 40644639 -45051115 - MLT1K LTR MaLR -240 348 174 510 219 29 0 chr15 40644806 40644911 -45050843 + MER96B DNA MER1_type? 3 110 -307 445 218 0 78 chr15 40645759 40645901 -45049853 + MIR3 SINE MIR 70 200 -8 696 204 22 61 chr15 40646134 40646365 -45049389 - LTR16B LTR ERVL 0 464 243 1612 200 6 9 chr15 40646376 40646696 -45049058 - MLT1B LTR MaLR 0 390 72 7231 125 10 34 chr15 40646697 40647651 -45048103 + Tigger1 DNA MER2_type 1 987 -1431 2112 131 0 7 chr15 40647651 40647957 -45047797 + AluSx SINE Alu 9 312 0 7231 125 10 34 chr15 40647957 40648528 -45047226 + Tigger1 DNA MER2_type 987 1570 -848 347 353 30 0 chr15 40649101 40649234 -45046520 + MIR SINE MIR 47 183 -79 742 159 0 0 chr15 40649919 40650045 -45045709 + L1MA7 LINE L1 6166 6291 0 257 279 23 0 chr15 40650251 40650337 -45045417 + (TA)n Simple_repeat Simple_repeat 2 89 0 360 296 104 8 chr15 40650839 40650964 -45044790 - MIR3 SINE MIR -49 159 23 2092 133 0 9 chr15 40652263 40652578 -45043176 - AluJo SINE Alu 0 312 1 375 310 93 8 chr15 40653843 40653996 -45041758 - MIR SINE MIR -77 131 8 1338 296 122 86 chr15 40654871 40655078 -45040676 - L3 LINE CR1 -24 1553 1355 1810 162 0 23 chr15 40655078 40655387 -45040367 - AluJb SINE Alu -9 303 2 1338 296 122 86 chr15 40655387 40656312 -45039442 - L3 LINE CR1 -222 1355 369 2186 53 8 0 chr15 40656312 40656576 -45039178 + AluSp SINE Alu 3 268 -45 1338 296 122 86 chr15 40656576 40656698 -45039056 - L3 LINE CR1 -1208 369 253 2406 86 0 3 chr15 40657115 40657417 -45038337 - AluSq SINE Alu -12 301 1 2399 87 3 0 chr15 40657514 40657813 -45037941 - AluSq SINE Alu -13 300 1 2203 83 55 0 chr15 40657930 40658219 -45037535 - AluSp SINE Alu -8 305 1 1849 144 4 0 chr15 40658408 40658679 -45037075 + MER7A DNA MER2_type 1 270 -76 303 88 35 105 chr15 40658696 40658753 -45037001 + Tigger3(Golem) DNA MER2_type 2873 2925 -104 377 315 117 11 chr15 40659904 40660090 -45035664 - MIR SINE MIR -25 237 32 905 152 37 12 chr15 40660735 40660899 -45034855 - L1MB7 LINE L1 -19 6165 5998 489 305 63 23 chr15 40661456 40661630 -45034124 + L2 LINE L2 3131 3311 -2 2868 133 65 15 chr15 40662074 40662554 -45033200 - MER41B LTR ERV1 0 635 132 293 275 22 33 chr15 40664261 40664352 -45031402 + L2 LINE L2 3224 3313 0 324 264 168 48 chr15 40664602 40664720 -45031034 + MIR3 SINE MIR 13 158 -50 570 312 26 5 chr15 40664720 40664909 -45030845 + MER117 DNA MER1_type 2 194 -3 324 264 168 48 chr15 40664909 40664957 -45030797 + MIR3 SINE MIR 158 199 -9 779 296 24 8 chr15 40665021 40665268 -45030486 - MIR SINE MIR -4 258 8 2295 133 54 20 chr15 40667345 40667697 -45028057 - THE1B LTR MaLR 0 364 1 352 293 25 50 chr15 40667753 40667951 -45027803 - L1M4 LINE L1 -1337 4809 4617 269 272 114 27 chr15 40668019 40668420 -45027334 + L1M4 LINE L1 4914 5342 -812 1603 206 57 64 chr15 40668479 40668600 -45027154 - MER110A LTR ERV1 0 468 348 2448 88 0 0 chr15 40668600 40668905 -45026849 + AluY SINE Alu 1 305 -6 1603 206 57 64 chr15 40668905 40669254 -45026500 - MER110A LTR ERV1 -120 348 1 432 271 94 70 chr15 40669314 40669789 -45025965 + L1MCc LINE L1 5 833 -5589 2310 243 120 17 chr15 40670020 40671344 -45024410 + L1MCc LINE L1 978 2164 -4777 2324 110 0 0 chr15 40671344 40671652 -45024102 + AluSx SINE Alu 1 308 -4 2310 243 120 17 chr15 40671652 40672447 -45023307 + L1MCc LINE L1 2164 3458 -3483 454 316 86 55 chr15 40672463 40673118 -45022636 + ERVL LTR ERVL 1121 1795 -3969 1722 202 50 0 chr15 40673123 40673440 -45022314 - MER58B DNA MER1_type 0 341 9 387 0 0 0 chr15 40674189 40674232 -45021522 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7655 55 0 1 chr15 40674238 40675648 -45020106 - L1PA8 LINE L1 -13 6159 4753 474 284 26 20 chr15 40675904 40676088 -45019666 + MIR SINE MIR 23 203 -59 273 167 0 0 chr15 40676114 40676162 -45019592 - L1PA16 LINE L1 0 6166 6119 299 282 113 9 chr15 40676985 40677102 -45018652 - MIR SINE MIR -62 146 40 182 231 0 0 chr15 40679125 40679164 -45016590 + MIR SINE MIR 40 78 -184 360 43 0 0 chr15 40679380 40679426 -45016328 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1200 96 28 11 chr15 40679809 40679986 -45015768 + LTR54 LTR ERV1 1 180 -330 2365 92 0 0 chr15 40680153 40680448 -45015306 - AluSx SINE Alu -17 295 1 271 299 8 55 chr15 40680597 40680620 -45015134 + MIR SINE MIR 53 76 -186 1962 191 99 64 chr15 40680620 40681106 -45014648 - MLT1D LTR MaLR -2 503 1 271 299 8 55 chr15 40681106 40681209 -45014545 + MIR SINE MIR 76 173 -89 264 277 31 15 chr15 40681280 40681345 -45014409 - L2 LINE L2 0 3313 3248 904 196 0 0 chr15 40682243 40682406 -45013348 + FRAM SINE Alu 1 163 -13 3142 120 48 28 chr15 40682519 40682802 -45012952 - MER34B LTR ERV1 -12 553 277 2462 134 12 50 chr15 40682802 40683221 -45012533 - MER57A LTR ERV1 0 403 1 3142 120 48 28 chr15 40683221 40683479 -45012275 - MER34B LTR ERV1 -288 277 1 2982 29 0 0 chr15 40684154 40684500 -45011254 - L1PA2 LINE L1 -1442 4704 4359 8289 14 4 2 chr15 40684500 40685959 -45009795 + L1PA2 LINE L1 4718 6179 0 1930 147 0 0 chr15 40686113 40686428 -45009326 - AluSx SINE Alu 0 315 1 328 226 85 9 chr15 40686649 40686755 -45008999 - MIR SINE MIR -55 207 94 375 23 0 0 chr15 40688958 40689002 -45006752 + (TG)n Simple_repeat Simple_repeat 1 44 0 456 264 9 9 chr15 40689628 40689738 -45006016 - L2 LINE L2 -15 3298 3189 509 321 20 25 chr15 40690183 40690379 -45005375 - MIR SINE MIR -34 228 34 740 233 85 27 chr15 40692044 40692267 -45003487 + MIR SINE MIR 17 252 -10 478 294 95 35 chr15 40693387 40693618 -45002136 - MIR SINE MIR -6 256 12 387 236 102 64 chr15 40695095 40695252 -45000502 + MIR SINE MIR 33 195 -67 582 307 82 43 chr15 40695588 40695845 -44999909 - L2 LINE L2 -14 3258 2992 368 215 39 54 chr15 40696397 40696527 -44999227 + L1MC4 LINE L1 7911 8038 -4 247 244 0 0 chr15 40697311 40697356 -44998398 + polypyrimidine Low_complexity Low_complexity 1 45 0 389 188 38 0 chr15 40697360 40697440 -44998314 - LTR16A LTR ERVL -44 406 324 551 226 47 55 chr15 40697576 40697760 -44997994 - L1MC5 LINE L1 -201 7760 7577 324 0 0 0 chr15 40697760 40697796 -44997958 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 551 226 47 55 chr15 40697796 40697868 -44997886 - L1MC5 LINE L1 -384 7577 7506 741 131 25 0 chr15 40697869 40697991 -44997763 - L1MA5A LINE L1 0 6297 6173 230 219 62 0 chr15 40698105 40698169 -44997585 + MLT1L LTR MaLR 166 233 -382 4696 187 108 123 chr15 40698324 40700022 -44995732 + L1MA6 LINE L1 2967 4688 -3031 1008 245 84 20 chr15 40700022 40700379 -44995375 + MSTC LTR MaLR 1 428 0 4696 187 108 123 chr15 40700379 40702762 -44992992 + L1MA6 LINE L1 4688 7332 -387 263 61 0 0 chr15 40702765 40702798 -44992956 - L1M2a LINE L1 -7135 33 1 183 152 0 0 chr15 40702819 40702865 -44992889 + (TA)n Simple_repeat Simple_repeat 1 46 0 192 308 19 0 chr15 40703004 40703056 -44992698 - L3 LINE CR1 -250 1327 1275 265 301 122 16 chr15 40703164 40703287 -44992467 + MIR3 SINE MIR 36 171 -37 441 219 136 19 chr15 40703680 40703835 -44991919 - MIR SINE MIR -78 184 12 21 0 0 0 chr15 40704978 40704999 -44990755 + GC_rich Low_complexity Low_complexity 1 21 0 277 83 0 0 chr15 40705426 40705462 -44990292 + U2 snRNA snRNA 1 36 -152 263 244 65 73 chr15 40705647 40705770 -44989984 - MIR SINE MIR -61 147 26 349 241 0 46 chr15 40706169 40706256 -44989498 + L2 LINE L2 3182 3264 -8 187 253 93 13 chr15 40706325 40706400 -44989354 - MIR SINE MIR -67 195 115 183 204 0 0 chr15 40706476 40706525 -44989229 + CT-rich Low_complexity Low_complexity 4 52 0 1226 185 4 2 chr15 40706739 40707017 -44988737 - MER2 DNA MER2_type -15 330 6 227 287 22 110 chr15 40707452 40707588 -44988166 - MIR SINE MIR -121 141 18 325 244 166 83 chr15 40707735 40707964 -44987790 - MIR SINE MIR -2 260 13 447 300 202 15 chr15 40708600 40708927 -44986827 - L1ME3 LINE L1 -296 5866 5485 1380 135 154 18 chr15 40708932 40709214 -44986540 + MLT1A1 LTR MaLR 2 348 -42 1192 153 0 0 chr15 40709215 40709392 -44986362 - AluJb SINE Alu -135 177 1 781 156 15 7 chr15 40709425 40709560 -44986194 + MLT1B LTR MaLR 1 136 -254 239 228 69 118 chr15 40709568 40709743 -44986011 - L1ME3 LINE L1 -932 5214 5053 2495 145 6 3 chr15 40709743 40710108 -44985646 + MER47A DNA MER2_type 1 366 0 239 228 69 118 chr15 40710108 40710178 -44985576 - L1ME3 LINE L1 -1093 5053 4981 294 336 45 0 chr15 40710178 40710288 -44985466 + L3 LINE CR1 1391 1505 -72 264 300 156 0 chr15 40710628 40710718 -44985036 + MIR SINE MIR 18 121 -87 2108 126 3 22 chr15 40710741 40711059 -44984695 - AluSq SINE Alu -1 312 1 234 272 81 44 chr15 40711059 40711195 -44984559 + MIR SINE MIR 98 238 -24 278 362 43 35 chr15 40711661 40711802 -44983952 + MIR3 SINE MIR 40 181 -27 1911 246 30 13 chr15 40712136 40712595 -44983159 - MLT1C LTR MaLR 0 467 1 778 298 78 19 chr15 40713451 40713770 -44981984 - LTR16A LTR ERVL 0 450 113 306 314 102 0 chr15 40714088 40714225 -44981529 + L1ME4a LINE L1 5754 5904 -217 1081 161 44 1 chr15 40714591 40714842 -44980912 + MER33 DNA MER1_type 1 247 -77 25 31 0 0 chr15 40715685 40715717 -44980037 + AT_rich Low_complexity Low_complexity 1 32 0 207 304 0 18 chr15 40715946 40716002 -44979752 + MIR SINE MIR 57 111 -151 296 191 0 16 chr15 40716021 40716084 -44979670 - MIR SINE MIR -89 173 112 21 57 0 0 chr15 40716653 40716688 -44979066 + AT_rich Low_complexity Low_complexity 1 35 0 1249 57 23 34 chr15 40716940 40717117 -44978637 + L1PA6 LINE L1 5978 6152 -2 266 95 24 0 chr15 40717407 40717449 -44978305 + MSTC LTR MaLR 1 43 -385 231 36 0 0 chr15 40717799 40717827 -44977927 + (TA)n Simple_repeat Simple_repeat 2 29 0 2065 155 5 29 chr15 40719475 40719861 -44975893 + L1MA4 LINE L1 4628 5004 -1142 3805 138 17 5 chr15 40719861 40720456 -44975298 + L1MA5A LINE L1 5689 6291 -6 538 136 12 0 chr15 40720512 40720593 -44975161 - FLAM SINE Alu -20 123 42 6119 130 27 37 chr15 40720655 40720986 -44974768 + L1MA4 LINE L1 4993 5326 -974 1653 170 18 11 chr15 40720986 40721269 -44974485 + AluJo SINE Alu 6 290 -22 6119 130 27 37 chr15 40721269 40722235 -44973519 + L1MA4 LINE L1 5326 6293 -7 548 207 12 12 chr15 40723072 40723236 -44972518 + CT-rich Low_complexity Low_complexity 1 164 0 1539 158 28 49 chr15 40723236 40723521 -44972233 - AluJo SINE Alu -33 279 1 223 208 21 0 chr15 40724034 40724082 -44971672 + GA-rich Low_complexity Low_complexity 2 50 0 694 229 139 96 chr15 40724990 40725379 -44970375 + MER110 LTR ERV1 83 466 -9 1351 107 0 14 chr15 40725601 40725816 -44969938 - pTR5 LTR ERV1 -2046 392 181 300 277 18 18 chr15 40725818 40725930 -44969824 - LTR30 LTR ERV1 -67 655 544 3035 188 66 44 chr15 40725934 40726908 -44968846 - pTR5 LTR ERV1 -417 2021 743 199 352 50 57 chr15 40728918 40729077 -44966677 + L2 LINE L2 2936 3093 -179 308 248 156 28 chr15 40729142 40729335 -44966419 + MIR SINE MIR 47 262 0 229 286 43 0 chr15 40729571 40729641 -44966113 + MER45C DNA AcHobo 2 74 -879 * 1491 283 60 9 chr15 40729639 40730085 -44965669 + MER45C DNA AcHobo 445 913 -40 356 321 96 68 chr15 40730258 40730857 -44964897 + L2 LINE L2 2655 3264 -8 1849 177 0 7 chr15 40731274 40731568 -44964186 - AluJb SINE Alu -20 292 1 26 0 0 0 chr15 40731744 40731770 -44963984 + AT_rich Low_complexity Low_complexity 1 26 0 258 305 78 7 chr15 40732286 40732440 -44963314 - L1ME3A LINE L1 -230 5940 5776 180 0 0 0 chr15 40734208 40734228 -44961526 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 295 278 99 31 chr15 40734526 40734688 -44961066 + MIR SINE MIR 78 250 -12 2507 43 0 0 chr15 40735242 40735524 -44960230 + AluY SINE Alu 20 301 -10 2382 97 3 0 chr15 40735922 40736230 -44959524 - AluSg SINE Alu -1 309 1 344 50 0 0 chr15 40736337 40736377 -44959377 - U2 snRNA snRNA -148 40 1 276 252 117 27 chr15 40736634 40736856 -44958898 + L1ME4a LINE L1 5874 6115 -6 2117 137 0 9 chr15 40737654 40737969 -44957785 - AluSx SINE Alu 0 312 1 206 211 39 96 chr15 40738396 40738500 -44957254 - MIR SINE MIR -54 208 111 185 278 0 0 chr15 40738502 40738556 -44957198 + MIR SINE MIR 203 256 -6 453 144 0 29 chr15 40738942 40739039 -44956715 - MER58 DNA MER1_type -3 2417 250 357 174 42 138 chr15 40739093 40739260 -44956494 + MER58C DNA MER1_type 64 214 -1 2737 167 31 58 chr15 40739351 40739623 -44956131 + L1PB4 LINE L1 3885 4163 -1993 2737 148 21 58 chr15 40739623 40739757 -44955997 + L1PB4 LINE L1 5652 5789 -367 2150 126 3 3 chr15 40739757 40740066 -44955688 + AluSg SINE Alu 1 309 -1 2737 148 21 58 chr15 40740066 40740452 -44955302 + L1PB4 LINE L1 5789 6153 -3 2737 167 31 58 chr15 40740452 40741376 -44954378 + L1PB4 LINE L1 4163 5110 -1046 2270 109 0 10 chr15 40741376 40741687 -44954067 + AluSq SINE Alu 4 311 -2 2737 167 31 58 chr15 40741687 40742109 -44953645 + L1PB4 LINE L1 5110 6153 -3 197 349 32 0 chr15 40742734 40742797 -44952957 - MIR SINE MIR -67 141 77 233 266 16 16 chr15 40743037 40743101 -44952653 - Charlie4 DNA MER1_type -4 1957 1894 3910 129 17 15 chr15 40743223 40743359 -44952395 - L1PA16 LINE L1 -5 6161 6027 2367 81 14 0 chr15 40743359 40743654 -44952100 - AluSq SINE Alu -14 299 1 3910 129 17 15 chr15 40743654 40744166 -44951588 - L1PA16 LINE L1 -139 6027 5512 1265 121 30 0 chr15 40744323 40744522 -44951232 - L1PA16 LINE L1 -649 5507 5303 475 113 0 0 chr15 40744523 40744594 -44951160 - AluSx SINE Alu -11 300 230 1117 137 6 55 chr15 40744595 40744778 -44950976 - AluSx SINE Alu -138 174 1 4384 201 63 25 chr15 40744779 40745867 -44949887 - L1 LINE L1 -835 5311 4182 1215 251 49 18 chr15 40745848 40746238 -44949516 - L1 LINE L1 -3370 2776 2375 * 1227 250 27 24 chr15 40746241 40746537 -44949217 + MER4B-int LTR ERV1 1985 2281 -4050 694 186 17 0 chr15 40746566 40746684 -44949070 - FLAM_C SINE Alu -19 124 5 343 119 0 127 chr15 40746686 40746763 -44948991 + MER4B-int LTR ERV1 2673 2726 -3220 391 164 0 15 chr15 40746814 40746881 -44948873 + MER34C LTR ERV1 160 225 -360 453 169 32 169 chr15 40746947 40747136 -44948618 + MER4B-int LTR ERV1 1190 1352 -3771 * 808 228 38 42 chr15 40747134 40747423 -44948331 + pTR5 LTR ERV1 741 1028 -1410 3749 150 27 65 chr15 40747504 40748217 -44947537 + LTR12 LTR ERV1 3 688 0 810 166 72 61 chr15 40748217 40748260 -44947494 + MER4B-int LTR ERV1 1993 2034 -4724 1904 150 3 10 chr15 40748260 40748560 -44947194 - AluSp SINE Alu -15 298 1 810 166 72 61 chr15 40748560 40748779 -44946975 + MER4B-int LTR ERV1 2034 2868 -3890 548 220 86 89 chr15 40748779 40749208 -44946546 + LTR28 LTR ERV1 1 486 -15 1972 206 63 22 chr15 40749484 40749975 -44945779 - MER9 LTR ERVK 0 511 1 444 146 55 55 chr15 40749983 40750093 -44945661 + MER4B-int LTR ERV1 3480 3589 -2742 2216 178 39 7 chr15 40750102 40750517 -44945237 + MSTA LTR MaLR 1 428 0 889 130 41 0 chr15 40750517 40750663 -44945091 + MSTA-int LTR MaLR 1 152 -1499 266 54 0 0 chr15 40750661 40750698 -44945056 + L1PB3 LINE L1 6112 6148 -6 * 3201 128 8 29 chr15 40750710 40751168 -44944586 + MER4B-int LTR ERV1 4227 4674 -2084 3251 93 9 13 chr15 40751168 40751619 -44944135 + LTR2 LTR ERV1 1 449 0 3201 128 8 29 chr15 40751619 40751682 -44944072 + MER4B-int LTR ERV1 4674 4737 -2021 591 78 99 205 chr15 40751685 40751896 -44943858 - LTR14A LTR ERVK -209 399 1 960 320 6 6 chr15 40751902 40752230 -44943524 - HERVKC4 LTR ERVK -7 5255 4928 200 149 0 95 chr15 40752438 40752512 -44943242 + (TTTTTG)n Simple_repeat Simple_repeat 5 71 0 9763 68 13 40 chr15 40752522 40753435 -44942319 - HERVK14 LTR ERVK -637 5308 4441 2320 81 3 3 chr15 40753435 40753730 -44942024 - AluY SINE Alu -16 295 1 9763 68 13 40 chr15 40753730 40754184 -44941570 - HERVK14 LTR ERVK -1504 4441 3977 11784 84 7 7 chr15 40754188 40755554 -44940200 - HERVK14 LTR ERVK -4392 1553 184 2292 88 0 3 chr15 40755554 40755879 -44939875 + AluY SINE Alu 1 324 0 11784 84 7 7 chr15 40755879 40756064 -44939690 - HERVK14 LTR ERVK -5760 185 1 2044 65 5 174 chr15 40756065 40756478 -44939276 - LTR14A LTR ERVK -1 343 1 2912 121 37 118 chr15 40756522 40757251 -44938503 + MER4B-int LTR ERV1 5282 5951 -807 1528 135 6 117 chr15 40757260 40757593 -44938161 - AluJo SINE Alu -16 296 1 978 245 35 19 chr15 40757595 40757856 -44937898 + MER4B-int LTR ERV1 6053 6317 -441 2779 123 40 15 chr15 40757856 40758311 -44937443 + MER50 LTR ERV1 1 466 -268 5027 66 25 0 chr15 40758451 40759091 -44936663 + SVA Other Other 730 1385 -1 23 33 0 0 chr15 40759091 40759121 -44936633 + AT_rich Low_complexity Low_complexity 1 30 0 4383 99 23 40 chr15 40759121 40759776 -44935978 + HSMAR1 DNA Mariner 644 1287 0 189 0 0 0 chr15 40760564 40760585 -44935169 + (TA)n Simple_repeat Simple_repeat 2 22 0 1653 91 0 9 chr15 40763253 40763472 -44932282 + AluSq SINE Alu 83 299 -14 219 36 0 0 chr15 40763813 40763841 -44931913 + (CCCTG)n Simple_repeat Simple_repeat 4 31 0 1839 101 105 22 chr15 40764788 40765098 -44930656 - AluSx SINE Alu 0 312 1 203 330 48 10 chr15 40765631 40765734 -44930020 + MIR SINE MIR 29 135 -73 21 36 0 0 chr15 40767236 40767264 -44928490 + AT_rich Low_complexity Low_complexity 1 28 0 1215 192 90 30 chr15 40767506 40767772 -44927982 + AluJo SINE Alu 1 282 -30 423 52 0 0 chr15 40767774 40767832 -44927922 + (TC)n Simple_repeat Simple_repeat 1 58 0 189 0 0 0 chr15 40767832 40767853 -44927901 + (TA)n Simple_repeat Simple_repeat 1 21 0 2470 161 26 2 chr15 40768330 40768746 -44927008 - MSTB LTR MaLR 0 426 1 189 195 0 0 chr15 40769157 40769198 -44926556 + (CATA)n Simple_repeat Simple_repeat 4 44 0 657 225 59 34 chr15 40770763 40770999 -44924755 + MIR SINE MIR 21 262 0 209 236 73 0 chr15 40771639 40771694 -44924060 + L2 LINE L2 3214 3272 0 189 0 0 0 chr15 40772510 40772531 -44923223 + (CAA)n Simple_repeat Simple_repeat 1 21 0 550 98 206 0 chr15 40773161 40773253 -44922501 - MER68 LTR ERV1 -451 111 1 557 151 0 0 chr15 40773627 40773720 -44922034 + AluJ/FLAM SINE Alu 2 94 -218 750 179 0 0 chr15 40773721 40773838 -44921916 + AluJo/FRAM SINE Alu 172 288 -24 4567 99 27 13 chr15 40774326 40774645 -44921109 + L1PA13 LINE L1 5459 5772 -391 189 107 0 0 chr15 40774645 40774673 -44921081 + (TA)n Simple_repeat Simple_repeat 1 28 0 4567 99 27 13 chr15 40774673 40775047 -44920707 + L1PA13 LINE L1 5772 6162 -1 5521 175 31 54 chr15 40776385 40776494 -44919260 + L1M4 LINE L1 3801 3911 -2235 2130 148 0 0 chr15 40776494 40776797 -44918957 - AluSx SINE Alu -9 303 1 5521 175 31 54 chr15 40776797 40778028 -44917726 + L1M4 LINE L1 3911 5110 -1036 32 0 0 0 chr15 40781834 40781866 -44913888 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr15 40782657 40782683 -44913071 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 973 134 139 15 chr15 40783764 40783965 -44911789 - 7SLRNA srpRNA srpRNA 0 320 95 378 310 217 5 chr15 40784672 40784875 -44910879 - MIR SINE MIR -6 256 11 190 260 40 0 chr15 40786289 40786339 -44909415 - MIR SINE MIR -62 146 95 1909 139 10 3 chr15 40787226 40787529 -44908225 + AluJb SINE Alu 1 305 -7 265 288 63 19 chr15 40787654 40787761 -44907993 - MER5A DNA MER1_type -45 139 20 214 284 252 0 chr15 40788068 40788195 -44907559 - MIR3 SINE MIR -1 207 49 623 250 157 20 chr15 40788576 40788780 -44906974 - MIR SINE MIR -10 252 21 2422 99 71 0 chr15 40788785 40789137 -44906617 + MER51B LTR ERV1 1 377 0 386 292 50 17 chr15 40790705 40790825 -44904929 - L2 LINE L2 -3 3310 3187 436 317 71 27 chr15 40790831 40791014 -44904740 - MIR3 SINE MIR -9 199 9 190 250 0 0 chr15 40793381 40793425 -44902329 - MIR SINE MIR -58 150 107 196 224 103 17 chr15 40795948 40796006 -44899748 - L3 LINE CR1 -778 799 737 522 161 0 0 chr15 40796030 40796111 -44899643 + MER51A LTR ERV1 1 81 -553 28 0 0 0 chr15 40796236 40796264 -44899490 + AT_rich Low_complexity Low_complexity 1 28 0 1722 178 10 0 chr15 40796271 40796574 -44899180 + AluSx SINE Alu 1 306 -6 243 277 106 21 chr15 40796701 40796795 -44898959 - MER5A DNA MER1_type -48 141 40 184 250 0 0 chr15 40797162 40797202 -44898552 - L3b LINE CR1 -5 1578 1539 603 231 170 19 chr15 40797760 40797960 -44897794 - MIR SINE MIR -18 244 18 283 220 0 0 chr15 40798113 40798163 -44897591 + PABL_B LTR ERV1 1 50 -617 733 282 56 41 chr15 40798235 40798817 -44896937 + PABL_B LTR ERV1 72 667 0 240 187 13 67 chr15 40798833 40798854 -44896900 - L1MC4a LINE L1 -1853 5955 5934 365 0 22 0 chr15 40798854 40798899 -44896855 + (CA)n Simple_repeat Simple_repeat 2 47 0 240 187 13 67 chr15 40798899 40798952 -44896802 - L1MC4a LINE L1 -1874 5934 5885 196 200 109 18 chr15 40800172 40800227 -44895527 - L3 LINE CR1 -781 796 737 3458 148 55 17 chr15 40800251 40800846 -44894908 + MER51A LTR ERV1 1 618 -16 281 252 79 102 chr15 40800934 40801061 -44894693 - L2 LINE L2 -3 3310 3187 374 318 119 0 chr15 40801067 40801218 -44894536 - MIR3 SINE MIR -9 199 31 1907 159 45 124 chr15 40801765 40802422 -44893332 - LTR10E LTR ERV1 0 566 1 803 105 0 0 chr15 40803331 40803436 -44892318 - AluJb SINE Alu -207 105 1 2377 75 0 0 chr15 40804252 40804559 -44891195 + AluY SINE Alu 1 307 -4 1673 134 17 14 chr15 40804647 40804937 -44890817 + AluSx SINE Alu 1 291 -21 2096 125 0 0 chr15 40806061 40806356 -44889398 + AluSx SINE Alu 1 295 -17 460 251 48 32 chr15 40807093 40807252 -44888502 - MIR3 SINE MIR -64 144 5 390 227 64 35 chr15 40807438 40807579 -44888175 - MIR SINE MIR -70 192 48 3927 122 5 44 chr15 40808929 40809562 -44886192 - LTR14B LTR ERVK 0 608 1 214 189 0 0 chr15 40810364 40810401 -44885353 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 941 168 7 7 chr15 40811113 40811268 -44884486 + MER5A DNA MER1_type 2 156 -33 1313 185 66 4 chr15 40812005 40812264 -44883490 + AluJo SINE Alu 1 275 -37 2163 93 3 7 chr15 40812353 40812653 -44883101 + AluSp SINE Alu 1 299 -14 1949 109 49 0 chr15 40812666 40812950 -44882804 + AluSx SINE Alu 1 298 -14 294 229 132 11 chr15 40813151 40813380 -44882374 + L1P5 LINE L1 5283 5555 -599 * 426 250 0 17 chr15 40813359 40813475 -44882279 + L1ME4a LINE L1 5532 5645 -476 933 234 77 29 chr15 40814281 40814634 -44881120 - L1MC4a LINE L1 -475 5827 5694 344 293 99 47 chr15 40814826 40815038 -44880716 + L1ME4a LINE L1 5895 6117 -4 596 190 9 17 chr15 40815162 40815278 -44880476 - FLAM_C SINE Alu -18 115 1 333 287 25 33 chr15 40815773 40815895 -44879859 + L2 LINE L2 2927 3047 -225 365 333 63 0 chr15 40815961 40816072 -44879682 - L2 LINE L2 -33 3239 3122 361 254 95 32 chr15 40817126 40817252 -44878502 + L2 LINE L2 3180 3313 0 1026 255 10 0 chr15 40817317 40817525 -44878229 - MER82 DNA MER2_type 0 653 444 331 338 61 30 chr15 40817557 40817755 -44877999 + MIR SINE MIR 2 205 -57 464 232 0 11 chr15 40817773 40817868 -44877886 - MER82 DNA MER2_type -559 94 1 706 181 0 31 chr15 40818460 40818473 -44877281 - FLAM_A SINE Alu -179 123 111 183 80 0 0 chr15 40818473 40818498 -44877256 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 706 181 0 31 chr15 40818498 40818611 -44877143 - FLAM_A SINE Alu -191 111 1 2807 65 8 3 chr15 40821151 40821503 -44874251 - THE1A LTR MaLR -1 354 1 2490 41 0 0 chr15 40822071 40822366 -44873388 + AluY SINE Alu 1 295 -16 1004 85 0 0 chr15 40822464 40822594 -44873160 - AluSq/x SINE Alu -183 130 1 1654 236 108 50 chr15 40822776 40823516 -44872238 - L1MC4a LINE L1 -1691 6100 5313 2118 112 0 3 chr15 40823516 40823820 -44871934 - AluSc SINE Alu -6 303 1 1654 236 108 50 chr15 40823820 40823839 -44871915 - L1MC4a LINE L1 -2478 5313 5297 551 304 132 28 chr15 40824274 40824699 -44871055 - L1MC4a LINE L1 -2975 3154 2686 847 266 103 40 chr15 40824739 40825516 -44870238 - L1M4 LINE L1 -3192 2954 2129 489 281 63 110 chr15 40825570 40825785 -44869969 - L1MC4a LINE L1 -4969 1150 926 1351 152 3 138 chr15 40825785 40826134 -44869620 - AluJo SINE Alu -10 302 1 489 281 63 110 chr15 40826134 40826537 -44869217 - L1MC4a LINE L1 -5193 926 561 1679 185 0 3 chr15 40828602 40828910 -44866844 + AluJb SINE Alu 6 312 0 230 161 0 36 chr15 40829706 40829762 -44865992 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1128 105 0 0 chr15 40829951 40830104 -44865650 + AluSp/q SINE Alu 159 311 -2 607 301 67 53 chr15 40830285 40830644 -44865110 - L3 LINE CR1 -177 1400 1037 7763 95 18 3 chr15 40831186 40832306 -44863448 - L1P LINE L1 -2936 3210 2074 * 11090 70 22 0 chr15 40832304 40833774 -44861980 + L1P LINE L1 3865 5367 -779 1193 71 0 0 chr15 40833776 40833917 -44861837 - AluSg SINE Alu -169 141 1 1668 189 126 36 chr15 40834545 40834989 -44860765 - LTR2B LTR ERV1 0 490 7 2020 119 65 3 chr15 40835264 40835558 -44860196 - AluSx SINE Alu 0 312 1 2584 68 126 8 chr15 40835817 40836213 -44859541 + LTR7 LTR ERV1 1 443 -7 1607 185 7 14 chr15 40837164 40837461 -44858293 - AluJo SINE Alu -17 295 1 540 118 0 0 chr15 40837585 40837674 -44858080 - AluSg/x SINE Alu 0 304 216 813 141 21 120 chr15 40837928 40837999 -44857755 + MER5A DNA MER1_type 16 92 -97 1641 134 130 0 chr15 40837999 40838275 -44857479 + AluSx SINE Alu 1 312 0 813 141 21 120 chr15 40838275 40838395 -44857359 + MER5A DNA MER1_type 92 188 -1 644 240 91 66 chr15 40839221 40839463 -44856291 + MIR SINE MIR 5 252 -10 306 295 82 0 chr15 40839547 40839669 -44856085 - MER112 DNA MER1_type -121 139 8 1059 58 7 0 chr15 40839690 40839827 -44855927 + L1PA13 LINE L1 6026 6163 0 1067 146 23 6 chr15 40839832 40840003 -44855751 + AluJo SINE Alu 118 291 -21 402 217 94 14 chr15 40841001 40841139 -44854615 - MER53 DNA DNA -40 149 1 256 188 42 0 chr15 40841147 40841195 -44854559 - MIR SINE MIR -156 106 57 289 213 13 40 chr15 40842001 40842076 -44853678 - MIR SINE MIR -85 177 105 21 0 0 0 chr15 40842114 40842135 -44853619 + AT_rich Low_complexity Low_complexity 1 21 0 2268 131 16 22 chr15 40843293 40843660 -44852094 - L1MB2 LINE L1 -228 5943 5579 1804 192 43 3 chr15 40843655 40844004 -44851750 - L1MB8 LINE L1 -346 5832 5470 * 352 234 54 71 chr15 40844106 40844215 -44851539 + L1MC4 LINE L1 7492 7598 -444 2211 114 7 0 chr15 40844215 40844522 -44851232 + AluSg SINE Alu 1 309 -1 352 234 54 71 chr15 40844522 40844596 -44851158 + L1MC4 LINE L1 7598 7672 -370 288 286 31 0 chr15 40844634 40844739 -44851015 + L1MC4 LINE L1 7807 8005 -37 2274 92 0 0 chr15 40845241 40845525 -44850229 + AluSx SINE Alu 1 284 -28 297 75 0 0 chr15 40845592 40845632 -44850122 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1126 281 131 60 chr15 40846938 40847739 -44848015 - L3 LINE CR1 -57 1520 663 295 241 13 38 chr15 40847692 40847771 -44847983 - L2 LINE L2 -1 3312 3236 * 188 222 22 0 chr15 40847936 40847981 -44847773 - L3 LINE CR1 -1102 475 430 2227 65 65 7 chr15 40848012 40848304 -44847450 + AluY SINE Alu 2 310 -1 815 248 85 104 chr15 40848336 40849223 -44846531 + L1MD3 LINE L1 6180 6968 -840 14561 141 24 12 chr15 40849229 40852793 -44842961 + L1MA1 LINE L1 2697 6302 0 541 273 92 20 chr15 40852812 40853061 -44842693 + L1MC4 LINE L1 7120 7386 -656 3135 221 37 21 chr15 40853061 40853719 -44842035 + L1ME1 LINE L1 5429 6102 -64 2021 105 24 24 chr15 40853719 40853852 -44841902 + AluSq SINE Alu 6 138 -175 1727 118 76 8 chr15 40853852 40854146 -44841608 + AluSx SINE Alu 1 312 0 2021 105 24 24 chr15 40854146 40854305 -44841449 + AluSq SINE Alu 137 299 -14 3135 221 37 21 chr15 40854305 40854367 -44841387 + L1ME1 LINE L1 6102 6161 -5 1438 244 80 65 chr15 40854356 40855033 -44840721 + L1MC4 LINE L1 7355 8041 -1 * 672 290 98 35 chr15 40855327 40855845 -44839909 + L1M4 LINE L1 2475 3025 -3121 326 221 120 25 chr15 40856258 40856416 -44839338 + L1ME3A LINE L1 5779 5951 -219 518 61 0 192 chr15 40856729 40856828 -44838926 - MADE1 DNA Mariner 0 80 1 2216 102 0 14 chr15 40856887 40857182 -44838572 + AluSg SINE Alu 3 293 -17 180 175 48 0 chr15 40857477 40857540 -44838214 + (TA)n Simple_repeat Simple_repeat 1 66 0 303 174 10 102 chr15 40857558 40857656 -44838098 + L1MC4 LINE L1 6615 6703 -1339 2347 75 10 0 chr15 40858281 40858405 -44837349 + AluY SINE Alu 1 122 -189 297 0 0 0 chr15 40858405 40858438 -44837316 + (CA)n Simple_repeat Simple_repeat 2 34 0 2347 75 10 0 chr15 40858438 40858607 -44837147 + AluY SINE Alu 122 297 -14 727 250 103 38 chr15 40858676 40858968 -44836786 - LTR16A1 LTR ERVL 0 457 147 183 191 64 21 chr15 40859977 40860024 -44835730 - L3 LINE CR1 -258 1319 1271 355 70 333 0 chr15 40860237 40860294 -44835460 + MADE1 DNA Mariner 5 80 0 2343 76 10 13 chr15 40860445 40860578 -44835176 + AluSg SINE Alu 1 133 -177 2282 103 0 3 chr15 40860578 40860880 -44834874 + AluSg SINE Alu 1 301 -9 2343 76 10 13 chr15 40860880 40861047 -44834707 + AluSg SINE Alu 133 300 -10 2083 122 17 0 chr15 40861060 40861347 -44834407 + AluSx SINE Alu 3 294 -18 506 242 37 19 chr15 40861732 40861893 -44833861 + MER103 DNA DNA 1 164 -2 1522 152 0 109 chr15 40861980 40862310 -44833444 - AluJb SINE Alu -18 294 1 444 265 99 6 chr15 40862630 40862792 -44832962 - LTR33A LTR ERVL -39 484 308 2170 117 3 0 chr15 40863186 40863493 -44832261 - AluSx SINE Alu -4 308 1 805 200 115 11 chr15 40864160 40864420 -44831334 - MER5C DNA MER1_type 0 324 38 262 238 25 12 chr15 40864458 40864538 -44831216 + MER103 DNA DNA 38 118 -48 235 214 29 0 chr15 40864779 40864849 -44830905 + GA-rich Low_complexity Low_complexity 2 73 0 331 264 155 0 chr15 40865474 40865603 -44830151 + MIR3 SINE MIR 33 181 -27 524 200 19 0 chr15 40866067 40866172 -44829582 + MER5A DNA MER1_type 6 112 -77 256 380 33 8 chr15 40866651 40866772 -44828982 + MIR SINE MIR 31 154 -108 1832 164 7 0 chr15 40867488 40867781 -44827973 - AluSx SINE Alu -17 295 1 2227 88 14 0 chr15 40867986 40868296 -44827458 - AluSp SINE Alu 0 314 1 201 296 0 0 chr15 40868432 40868476 -44827278 - MER91 DNA MER1_type -83 57 14 2393 92 0 0 chr15 40868538 40868841 -44826913 - AluSx SINE Alu -9 303 1 2162 95 3 3 chr15 40870000 40870284 -44825470 + AluSc SINE Alu 14 297 -12 2375 110 0 0 chr15 40870401 40870711 -44825043 + AluSg SINE Alu 1 310 0 9811 25 0 221 chr15 40870934 40872711 -44823043 - SVA Other Other -1 1385 1 215 0 0 62 chr15 40872713 40872745 -44823009 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 12642 126 15 4 chr15 40873145 40875032 -44820722 - L1M1 LINE L1 -4502 3063 1155 371 257 86 18 chr15 40875032 40875218 -44820536 + LTR33A LTR ERVL 301 469 -54 811 189 0 0 chr15 40875224 40875356 -44820398 + AluJo/FLAM SINE Alu 2 133 -169 1426 106 0 0 chr15 40875359 40875538 -44820216 + AluSg SINE Alu 1 179 -131 1167 88 0 0 chr15 40875601 40875749 -44820005 + AluSc SINE Alu 144 291 -18 992 103 0 139 chr15 40875749 40875943 -44819811 + AluSg/x SINE Alu 134 300 -12 250 343 51 26 chr15 40875978 40876095 -44819659 - MIR SINE MIR -93 115 5 261 0 0 0 chr15 40876784 40876813 -44818941 + (CA)n Simple_repeat Simple_repeat 1 29 0 1669 159 33 7 chr15 40877016 40877286 -44818468 + AluJo SINE Alu 15 291 -21 268 292 50 17 chr15 40877310 40877430 -44818324 - L1ME4a LINE L1 -57 6064 5941 1679 183 85 25 chr15 40877905 40878271 -44817483 - MSTD LTR MaLR 0 396 9 386 218 36 36 chr15 40878255 40878365 -44817389 - LTR33 LTR ERVL -28 493 384 * 2170 87 42 3 chr15 40878639 40878927 -44816827 - AluSx SINE Alu -13 299 1 323 223 87 48 chr15 40880080 40880183 -44815571 + L1MC4 LINE L1 6595 6701 -1341 1555 225 63 33 chr15 40880184 40880360 -44815394 - L1MC4 LINE L1 -124 7918 7749 2094 109 3 0 chr15 40880360 40880644 -44815110 + AluSg SINE Alu 1 285 -25 560 62 12 0 chr15 40880645 40880726 -44815028 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1555 225 63 33 chr15 40880726 40881005 -44814749 - L1MC4 LINE L1 -292 7750 7447 2426 67 0 0 chr15 40881678 40881978 -44813776 + AluY SINE Alu 1 300 -11 1883 170 3 0 chr15 40881986 40882297 -44813457 + AluJo SINE Alu 1 312 0 244 232 81 50 chr15 40882677 40882776 -44812978 - LTR33A LTR ERVL -362 161 60 183 156 0 0 chr15 40883375 40883407 -44812347 + A-rich Low_complexity Low_complexity 2 33 0 285 209 0 0 chr15 40884397 40884464 -44811290 + (CA)n Simple_repeat Simple_repeat 1 67 0 203 218 88 82 chr15 40884596 40884743 -44811011 - L2 LINE L2 -452 2862 2715 207 0 0 0 chr15 40884851 40884874 -44810880 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2261 92 0 3 chr15 40884879 40885185 -44810569 + AluSg SINE Alu 3 307 -3 1151 228 23 99 chr15 40885464 40885898 -44809856 - MLT1J LTR MaLR -2 509 109 1472 171 113 16 chr15 40886170 40886428 -44809326 - MER58B DNA MER1_type -2081 339 45 2066 123 3 28 chr15 40886428 40886745 -44809009 + AluSx SINE Alu 3 311 -1 1472 171 113 16 chr15 40886745 40886795 -44808959 - MER58B DNA MER1_type -2375 45 1 525 211 79 0 chr15 40886891 40887005 -44808749 - MIR SINE MIR -77 185 63 745 264 129 0 chr15 40887155 40887356 -44808398 + MIR SINE MIR 8 234 -28 359 229 19 48 chr15 40887830 40887935 -44807819 - MER5A DNA MER1_type -15 174 73 251 211 42 28 chr15 40887935 40887951 -44807803 - Charlie1 DNA MER1_type -396 2365 2351 1937 172 47 5 chr15 40887951 40888334 -44807420 - L1MD2 LINE L1 -1 6358 5960 251 211 42 28 chr15 40888334 40888388 -44807366 - Charlie1 DNA MER1_type -410 2351 2294 1515 180 7 30 chr15 40888413 40888708 -44807046 - AluJo SINE Alu -24 288 1 1789 189 43 18 chr15 40888732 40889128 -44806626 - L1MA9 LINE L1 -247 6065 5660 297 238 0 0 chr15 40889128 40889191 -44806563 + MER5A DNA MER1_type 124 186 -3 2311 75 0 16 chr15 40889197 40889505 -44806249 + AluY SINE Alu 1 303 -8 2203 95 0 0 chr15 40890469 40890763 -44804991 + AluSx SINE Alu 1 294 -18 2123 117 27 0 chr15 40891381 40891681 -44804073 + AluSx SINE Alu 1 308 -4 595 258 121 17 chr15 40891846 40892160 -44803594 + L1MC/D LINE L1 5372 5725 -468 569 314 37 5 chr15 40892162 40892249 -44803505 + MIR SINE MIR 58 141 -121 288 53 0 0 chr15 40892249 40892287 -44803467 + (CA)n Simple_repeat Simple_repeat 1 38 0 569 314 37 5 chr15 40892287 40892390 -44803364 + MIR SINE MIR 141 254 -8 2049 95 51 0 chr15 40893469 40893763 -44801991 - AluSq SINE Alu -4 309 1 238 319 106 9 chr15 40893859 40893972 -44801782 + MIR SINE MIR 17 140 -68 252 259 127 62 chr15 40894652 40894796 -44800958 + MIR3 SINE MIR 15 183 -41 323 167 71 36 chr15 40895003 40895087 -44800667 - MIR3 SINE MIR -10 198 112 216 0 0 0 chr15 40895170 40895194 -44800560 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1666 145 29 7 chr15 40895197 40895473 -44800281 - AluSx SINE Alu -30 282 1 234 270 14 14 chr15 40895890 40895964 -44799790 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 415 200 64 32 chr15 40896249 40896374 -44799380 - MIR SINE MIR -7 255 127 2228 115 0 0 chr15 40896599 40896904 -44798850 + AluSq SINE Alu 1 305 -8 370 294 115 20 chr15 40897331 40897583 -44798171 + L1MC4a LINE L1 5667 5942 -1866 370 295 131 68 chr15 40897810 40898176 -44797578 + L2 LINE L2 2921 3309 -4 42 20 0 0 chr15 40898235 40898284 -44797470 + AT_rich Low_complexity Low_complexity 1 49 0 1736 152 51 0 chr15 40898314 40898610 -44797144 - AluSx SINE Alu -1 311 1 853 201 0 12 chr15 40898616 40898780 -44796974 - AluJo SINE Alu -4 298 137 524 335 99 11 chr15 40898783 40899055 -44796699 - L3 LINE CR1 -110 1467 1172 271 280 194 40 chr15 40899157 40899332 -44796422 - L3 LINE CR1 -426 1151 950 1017 164 11 0 chr15 40900410 40900587 -44795167 - AluJo SINE Alu -14 298 120 820 165 8 0 chr15 40901863 40901996 -44793758 - AluJo SINE Alu -175 137 4 2223 65 3 36 chr15 40902691 40902997 -44792757 - AluSc SINE Alu -7 302 7 1388 160 0 4 chr15 40903156 40903393 -44792361 - AluJo SINE Alu -12 300 65 957 180 0 12 chr15 40903516 40903677 -44792077 + FRAM SINE Alu 1 159 -7 1942 136 10 7 chr15 40904081 40904391 -44791363 + AluSx SINE Alu 1 311 -1 935 247 121 50 chr15 40904550 40904670 -44791084 - LTR33A LTR ERVL 0 523 413 1936 154 80 3 chr15 40904670 40905008 -44790746 + THE1B LTR MaLR 1 364 0 935 247 121 50 chr15 40905008 40905251 -44790503 - LTR33A LTR ERVL -110 413 134 991 242 0 45 chr15 40905271 40905535 -44790219 + L1PBa LINE L1 1102 1353 -5510 329 311 46 20 chr15 40905539 40905690 -44790064 - LTR33 LTR ERVL -365 156 2 310 262 48 12 chr15 40905766 40905850 -44789904 - MIR SINE MIR -104 158 72 1678 198 90 42 chr15 40906509 40906662 -44789092 + L1MB8 LINE L1 5716 5860 -318 2177 93 0 0 chr15 40906662 40906951 -44788803 + AluSc SINE Alu 19 307 -2 1678 198 90 42 chr15 40906951 40907231 -44788523 + L1MB8 LINE L1 5860 6170 -8 1724 166 0 7 chr15 40907232 40907528 -44788226 - AluJb SINE Alu -18 294 1 31 26 0 0 chr15 40907528 40907566 -44788188 + AT_rich Low_complexity Low_complexity 1 38 0 489 363 6 6 chr15 40907915 40908086 -44787668 + L2 LINE L2 3099 3269 -3 1560 166 0 72 chr15 40908086 40908430 -44787324 - AluJb SINE Alu 0 312 1 213 240 301 34 chr15 40908526 40908672 -44787082 - MIR SINE MIR -50 212 28 1222 137 73 6 chr15 40908710 40908967 -44786787 - Tigger5 DNA MER2_type -1 2322 77 225 235 0 20 chr15 40909000 40909051 -44786703 + Tigger5 DNA MER2_type 1 50 -2273 * 319 269 0 0 chr15 40909046 40909113 -44786641 - Tigger5 DNA MER2_type -2256 67 1 474 151 0 0 chr15 40909323 40909396 -44786358 - AluJ/FLAM SINE Alu -224 88 16 * 558 165 0 0 chr15 40909393 40909490 -44786264 + AluSg/x SINE Alu 208 304 -6 1722 126 19 0 chr15 40909971 40910084 -44785670 + AluSx SINE Alu 16 125 -190 245 50 0 25 chr15 40910084 40910124 -44785630 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1722 126 19 0 chr15 40910124 40910305 -44785449 + AluSx SINE Alu 125 315 0 3196 144 69 6 chr15 40910544 40911066 -44784688 - MER21A LTR ERV1 -1 930 376 1126 148 94 0 chr15 40911068 40911267 -44784487 - MER21A LTR ERV1 -663 268 51 3196 62 5 0 chr15 40911267 40911652 -44784102 + MLT2A1 LTR ERVL 2 388 -56 352 138 35 0 chr15 40911658 40911716 -44784038 - MER21A LTR ERV1 -871 60 1 1794 223 52 33 chr15 40912300 40912561 -44783193 + MLT1F LTR MaLR 113 387 -155 2166 81 32 0 chr15 40912561 40912845 -44782909 + AluSg SINE Alu 2 294 -16 1794 223 52 33 chr15 40912845 40913005 -44782749 + MLT1F LTR MaLR 387 542 0 185 291 47 23 chr15 40913180 40913266 -44782488 + L2 LINE L2 1787 1874 -1440 1822 130 0 57 chr15 40913365 40913680 -44782074 + AluSx SINE Alu 1 297 -15 617 172 33 16 chr15 40914034 40914156 -44781598 - AluJb SINE Alu -187 125 2 48 32 0 0 chr15 40914217 40914279 -44781475 + AT_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chr15 40915005 40915030 -44780724 + AT_rich Low_complexity Low_complexity 1 25 0 1209 124 31 31 chr15 40915119 40915280 -44780474 - L1MA7 LINE L1 -10 6281 6118 1985 141 3 0 chr15 40915280 40915578 -44780176 + AluJb SINE Alu 1 299 -13 1209 124 31 31 chr15 40915578 40915642 -44780112 - L1MA7 LINE L1 -172 6119 6056 21 0 0 0 chr15 40915683 40915704 -44780050 + AT_rich Low_complexity Low_complexity 1 21 0 2222 87 3 0 chr15 40915713 40916027 -44779727 + AluSq SINE Alu 1 315 0 1792 144 0 37 chr15 40916058 40916356 -44779398 + AluSx SINE Alu 1 287 -25 949 193 6 0 chr15 40916375 40916546 -44779208 + FAM SINE Alu 1 172 -3 2302 72 3 10 chr15 40916546 40916851 -44778903 + AluY SINE Alu 1 303 -8 278 298 24 12 chr15 40916948 40917032 -44778722 + L2 LINE L2 3212 3296 -17 586 265 118 12 chr15 40917033 40917258 -44778496 - L1M4 LINE L1 -333 5788 5562 186 43 0 0 chr15 40917302 40917325 -44778429 + (A)n Simple_repeat Simple_repeat 1 23 0 704 126 0 68 chr15 40917962 40918153 -44777601 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 232 186 14 14 chr15 40918155 40918225 -44777529 + GA-rich Low_complexity Low_complexity 2 71 0 287 235 143 25 chr15 40918252 40918371 -44777383 + MIR3 SINE MIR 68 200 -8 1096 147 66 5 chr15 40918968 40919166 -44776588 + AluJb SINE Alu 87 296 -16 356 263 26 136 chr15 40919824 40919979 -44775775 - LTR16A LTR ERVL -15 435 311 2251 101 0 0 chr15 40919979 40920286 -44775468 + AluSg SINE Alu 2 308 -2 356 263 26 136 chr15 40920286 40920358 -44775396 - LTR16A LTR ERVL -139 311 233 2006 96 11 4 chr15 40920755 40921058 -44774696 - AluSx SINE Alu 0 305 1 407 265 68 17 chr15 40921059 40921176 -44774578 - MIR SINE MIR -56 152 30 207 254 79 105 chr15 40921681 40921844 -44773910 + MER5A DNA MER1_type 5 160 -18 2196 112 3 0 chr15 40922444 40922748 -44773006 + AluSx SINE Alu 5 309 -3 861 248 108 49 chr15 40922817 40923568 -44772186 + L1MC5 LINE L1 7258 7929 -32 1911 132 0 3 chr15 40923576 40923865 -44771889 + AluSx SINE Alu 1 288 -24 212 202 58 125 chr15 40924642 40924746 -44771008 + L2 LINE L2 3209 3305 -8 22 35 0 0 chr15 40925007 40925036 -44770718 + AT_rich Low_complexity Low_complexity 1 29 0 1908 153 3 10 chr15 40925678 40925992 -44769762 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 40926004 40926025 -44769729 + (A)n Simple_repeat Simple_repeat 1 21 0 697 207 0 0 chr15 40926025 40926141 -44769613 - FLAM_C SINE Alu -26 117 2 240 278 111 56 chr15 40927750 40927858 -44767896 - L2 LINE L2 -5 3308 3195 1513 162 18 11 chr15 40928714 40928998 -44766756 - AluJo SINE Alu -8 304 19 31 58 0 0 chr15 40929745 40929797 -44765957 + GC_rich Low_complexity Low_complexity 1 52 0 213 200 0 0 chr15 40929879 40929924 -44765830 + (CGG)n Simple_repeat Simple_repeat 1 45 0 1478 80 0 0 chr15 40933200 40933387 -44762367 - AluSx SINE Alu -125 187 1 180 198 0 128 chr15 40934244 40934330 -44761424 - MER5C DNA MER1_type -27 297 223 597 307 117 39 chr15 40934590 40935052 -44760702 + L1MC/D LINE L1 5307 5804 -2004 21 36 0 0 chr15 40935069 40935097 -44760657 + AT_rich Low_complexity Low_complexity 1 28 0 1939 126 20 0 chr15 40935143 40935445 -44760309 - AluSx SINE Alu -4 308 1 1790 145 48 0 chr15 40936026 40936316 -44759438 - AluSx SINE Alu -8 304 1 1589 159 6 37 chr15 40936554 40936875 -44758879 - AluJo SINE Alu -1 311 1 600 240 87 0 chr15 40936995 40937145 -44758609 - MER5A DNA MER1_type 0 189 27 2395 95 3 45 chr15 40937368 40937725 -44758029 + THE1C LTR MaLR 1 342 -33 9047 98 86 68 chr15 40937734 40939287 -44756467 + THE1C-int LTR MaLR 1 1580 0 2320 93 65 8 chr15 40939287 40939642 -44756112 + THE1C LTR MaLR 1 375 0 1686 154 0 0 chr15 40940122 40940389 -44755365 - AluSx SINE Alu -9 303 37 379 107 0 0 chr15 40940598 40940654 -44755100 - Alu SINE Alu -1 301 246 203 195 24 0 chr15 40940826 40940867 -44754887 + MER5B DNA MER1_type 1 42 -136 * 494 163 61 20 chr15 40940860 40940958 -44754796 - MER5B DNA MER1_type -75 103 2 * 822 245 69 0 chr15 40940958 40941170 -44754584 + L2 LINE L2 584 810 -2504 824 169 99 29 chr15 40941186 40941358 -44754396 + MER20 DNA MER1_type 36 219 0 466 270 68 0 chr15 40941435 40941583 -44754171 + MER112 DNA MER1_type 92 249 -11 1382 256 284 28 chr15 40941591 40942269 -44753485 + L2 LINE L2 805 1308 -2006 1894 112 77 0 chr15 40942269 40942556 -44753198 + AluSg SINE Alu 1 309 -1 1382 256 284 28 chr15 40942556 40942714 -44753040 + L2 LINE L2 1308 1856 -1458 734 139 98 0 chr15 40942716 40942838 -44752916 - AluJb SINE Alu -174 138 5 347 271 162 20 chr15 40942841 40943088 -44752666 + L2 LINE L2 1873 2154 -1160 * 451 310 108 19 chr15 40943073 40943341 -44752413 + L2 LINE L2 3020 3311 -2 298 308 26 51 chr15 40944492 40944609 -44751145 + MER5B DNA MER1_type 3 116 -62 937 164 64 20 chr15 40945417 40945623 -44750131 - MLT1B LTR MaLR 0 467 196 2300 190 22 28 chr15 40945623 40946086 -44749668 - MER66B LTR ERV1 0 486 27 940 181 26 48 chr15 40946076 40946303 -44749451 - MLT1B LTR MaLR -168 222 1 * 288 280 95 36 chr15 40946655 40946823 -44748931 + MER5B DNA MER1_type 1 178 0 1775 145 7 24 chr15 40946944 40947263 -44748491 + AluSq SINE Alu 1 313 0 414 242 220 8 chr15 40947619 40947751 -44748003 - MER5A DNA MER1_type -21 168 9 248 260 0 0 chr15 40947966 40948016 -44747738 + MER5A DNA MER1_type 4 53 -136 829 146 0 14 chr15 40948113 40948257 -44747497 - FLAM_C SINE Alu -1 142 1 186 43 0 0 chr15 40948263 40948286 -44747468 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1263 175 45 26 chr15 40948296 40948565 -44747189 - AluJb SINE Alu -33 279 6 2414 76 0 0 chr15 40949259 40949563 -44746191 + AluSg SINE Alu 1 304 -6 371 168 18 0 chr15 40949677 40949764 -44745990 + L1ME1 LINE L1 6088 6184 0 289 259 69 43 chr15 40950069 40950185 -44745569 - MIR SINE MIR -74 134 16 229 260 0 27 chr15 40950357 40950430 -44745324 - L2 LINE L2 -52 3261 3191 461 249 37 7 chr15 40950526 40950688 -44745066 + MIR SINE MIR 70 236 -26 495 0 0 0 chr15 40950726 40950781 -44744973 + (TG)n Simple_repeat Simple_repeat 2 56 0 472 275 174 7 chr15 40951399 40951548 -44744206 + MER5A DNA MER1_type 10 183 -6 218 232 18 36 chr15 40951637 40951693 -44744061 - MIR SINE MIR -187 75 21 289 294 40 40 chr15 40952508 40952634 -44743120 - MIR3 SINE MIR -78 130 5 5738 65 4 19 chr15 40953659 40953737 -44742017 + L1PA6 LINE L1 5414 5492 -662 2081 78 4 7 chr15 40953737 40954046 -44741708 + AluY SINE Alu 1 308 0 5738 65 4 19 chr15 40954046 40954718 -44741036 + L1PA6 LINE L1 5492 6154 0 216 86 0 0 chr15 40955237 40955272 -44740482 + (T)n Simple_repeat Simple_repeat 1 35 0 1311 138 0 27 chr15 40956470 40956694 -44739060 - MER20 DNA MER1_type -1 218 1 2034 102 28 0 chr15 40957542 40957825 -44737929 + AluSx SINE Alu 1 291 -21 56 0 0 0 chr15 40958233 40958289 -44737465 + AT_rich Low_complexity Low_complexity 1 56 0 2431 72 0 0 chr15 40958594 40958901 -44736853 + AluY SINE Alu 1 307 -4 189 132 0 0 chr15 40960048 40960086 -44735668 + (TG)n Simple_repeat Simple_repeat 1 38 0 1659 144 27 30 chr15 40961191 40961490 -44734264 + AluJb SINE Alu 1 298 -14 188 340 145 33 chr15 40962313 40962616 -44733138 + L2 LINE L2 2921 3257 -15 1868 122 7 4 chr15 40963942 40964221 -44731533 + AluSq SINE Alu 1 280 -33 186 43 0 0 chr15 40964225 40964248 -44731506 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1568 159 35 28 chr15 40964491 40964780 -44730974 + AluJo SINE Alu 1 291 -21 271 340 67 27 chr15 40965431 40965581 -44730173 - MIR3 SINE MIR -5 203 48 343 277 50 8 chr15 40966067 40966186 -44729568 + MIR3 SINE MIR 54 177 -31 360 304 138 22 chr15 40966830 40967054 -44728700 + L2 LINE L2 2847 3096 -176 329 226 0 0 chr15 40967147 40967209 -44728545 - L2 LINE L2 0 3313 3252 481 129 276 0 chr15 40967324 40967440 -44728314 - MER5A DNA MER1_type -35 154 7 265 302 139 51 chr15 40968177 40968392 -44727362 - MIR SINE MIR -9 253 20 215 247 136 12 chr15 40969293 40969374 -44726380 + MIR SINE MIR 33 123 -85 330 266 186 0 chr15 40969581 40969597 -44726157 + L2 LINE L2 3121 3133 -139 2062 110 3 31 chr15 40969597 40969916 -44725838 - AluSx SINE Alu -2 310 1 330 266 186 0 chr15 40969916 40970023 -44725731 + L2 LINE L2 3133 3267 -5 2013 108 0 35 chr15 40970341 40970655 -44725099 - AluSx SINE Alu -9 303 1 1449 178 107 0 chr15 40971521 40971791 -44723963 - AluJo SINE Alu -3 299 1 24 53 0 0 chr15 40971801 40971839 -44723915 + AT_rich Low_complexity Low_complexity 1 38 0 2222 91 16 0 chr15 40971916 40972223 -44723531 - AluSx SINE Alu 0 312 1 2225 88 7 3 chr15 40972451 40972756 -44722998 + AluSp SINE Alu 1 306 -7 2289 67 3 7 chr15 40974555 40974855 -44720899 - AluSg SINE Alu -11 299 1 1825 186 98 34 chr15 40974983 40975424 -44720330 - MLT1D LTR MaLR -4 501 33 1648 218 58 113 chr15 40976111 40976830 -44718924 - L1MC4 LINE L1 -5 8037 7358 482 279 92 48 chr15 40977241 40977470 -44718284 - L1MC4 LINE L1 0 8042 7804 948 253 36 74 chr15 40977587 40977979 -44717775 - L1MC4 LINE L1 -316 7726 7350 827 154 0 0 chr15 40978823 40978953 -44716801 + AluJo SINE Alu 2 131 -171 1441 86 131 5 chr15 40978956 40979201 -44716553 + AluY SINE Alu 35 307 0 1058 141 0 24 chr15 40979204 40979374 -44716380 + AluJo SINE Alu 137 302 0 2160 107 0 0 chr15 40980153 40980451 -44715303 + AluSg SINE Alu 1 298 -12 1788 240 119 10 chr15 40980838 40981333 -44714421 + MLT1F1 LTR MaLR 3 551 -16 2479 134 133 61 chr15 40982131 40982310 -44713444 - MER4A LTR ERV1 -2 598 433 2314 100 0 17 chr15 40982310 40982609 -44713145 + AluSx SINE Alu 1 294 -18 2479 134 133 61 chr15 40982609 40982622 -44713132 - MER4A LTR ERV1 -167 433 422 405 0 0 0 chr15 40982622 40982667 -44713087 + (CA)n Simple_repeat Simple_repeat 2 46 0 2479 134 133 61 chr15 40982667 40983031 -44712723 - MER4A LTR ERV1 -178 422 1 24 0 0 0 chr15 40983365 40983389 -44712365 + AT_rich Low_complexity Low_complexity 1 24 0 900 48 0 0 chr15 40983440 40983543 -44712211 + AluYb8 SINE Alu 1 103 -215 2080 94 50 3 chr15 40983547 40983844 -44711910 + AluY SINE Alu 1 311 0 293 298 46 15 chr15 40984535 40984666 -44711088 + MIR SINE MIR 48 182 -80 2251 110 0 0 chr15 40984889 40985181 -44710573 - AluSx SINE Alu -20 292 1 188 33 0 33 chr15 40987218 40987248 -44708506 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 203 293 38 47 chr15 40987580 40987686 -44708068 - MER5A DNA MER1_type -2 187 83 251 319 64 0 chr15 40987761 40987855 -44707899 + MER5A DNA MER1_type 7 106 -83 280 322 0 23 chr15 40988391 40988478 -44707276 + L2 LINE L2 3229 3313 0 563 119 18 13 chr15 40989236 40989454 -44706300 + AluJb SINE Alu 1 312 0 1816 146 28 3 chr15 40990450 40990737 -44705017 + AluJb SINE Alu 14 307 -5 2224 102 3 10 chr15 40990871 40991174 -44704580 - AluSp SINE Alu -12 301 1 228 86 0 0 chr15 40991197 40991232 -44704522 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2119 130 0 7 chr15 40991326 40991633 -44704121 + AluSx SINE Alu 1 305 -7 229 191 83 0 chr15 40994430 40994514 -44701240 - L1ME4a LINE L1 -2 6119 6029 2433 189 21 25 chr15 40995449 40995977 -44699777 + L1M4 LINE L1 4497 5022 -1124 261 0 0 0 chr15 40996089 40996118 -44699636 + (TG)n Simple_repeat Simple_repeat 1 29 0 249 33 0 0 chr15 40996117 40996147 -44699607 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2354 70 0 7 chr15 40996218 40996527 -44699227 - AluSg SINE Alu 0 307 1 363 306 0 8 chr15 40997246 40997370 -44698384 - L2 LINE L2 0 3313 3191 21 0 0 0 chr15 40998167 40998188 -44697566 + AT_rich Low_complexity Low_complexity 1 21 0 2339 68 0 4 chr15 40999484 40999785 -44695969 - AluSg SINE Alu 0 300 1 714 266 115 13 chr15 41000207 41000433 -44695321 - MIR SINE MIR -11 251 3 261 286 144 7 chr15 41001579 41001718 -44694036 + MIR SINE MIR 43 191 -65 295 253 116 34 chr15 41004848 41004994 -44690760 + MIR SINE MIR 93 250 -12 204 341 0 12 chr15 41006300 41006385 -44689369 + MIR3 SINE MIR 110 193 -15 756 204 36 12 chr15 41006518 41006685 -44689069 - L1ME4a LINE L1 -290 5880 5710 312 263 25 0 chr15 41007334 41007414 -44688340 - MIR3 SINE MIR -36 172 91 542 258 93 0 chr15 41009126 41009308 -44686446 + MIR SINE MIR 59 257 -5 2177 106 3 0 chr15 41009315 41009599 -44686155 - AluSg SINE Alu -17 293 9 332 300 139 17 chr15 41009665 41009845 -44685909 + MIR SINE MIR 20 221 -41 2176 122 0 3 chr15 41009865 41010168 -44685586 - AluSx SINE Alu -10 302 1 734 254 10 10 chr15 41010199 41010400 -44685354 - MIR SINE MIR -1 261 61 2128 133 39 30 chr15 41011125 41011486 -44684268 - THE1B LTR MaLR 0 364 1 250 219 117 63 chr15 41012188 41012393 -44683361 - L1ME4a LINE L1 -2320 5488 5273 2823 168 94 27 chr15 41012488 41013114 -44682640 + L1MA7 LINE L1 5620 6287 -4 891 227 0 0 chr15 41013469 41013641 -44682113 - AluJ SINE Alu 0 312 141 894 154 0 0 chr15 41013697 41013827 -44681927 - AluJ SINE Alu -181 131 2 2361 108 0 0 chr15 41014574 41014880 -44680874 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr15 41015107 41015129 -44680625 + AT_rich Low_complexity Low_complexity 1 22 0 307 234 26 0 chr15 41015650 41015723 -44680031 - MER5A DNA MER1_type -81 106 20 2320 184 22 31 chr15 41015737 41016469 -44679285 - MER21B LTR ERV1 -73 790 6 242 232 49 12 chr15 41016510 41016592 -44679162 + MIR SINE MIR 37 121 -87 191 250 0 0 chr15 41016602 41016646 -44679108 + L2 LINE L2 3199 3242 -71 205 250 83 56 chr15 41016852 41016960 -44678794 + MER5B DNA MER1_type 37 147 -31 608 152 0 0 chr15 41016972 41017064 -44678690 + FLAM_A SINE Alu 23 114 -28 216 0 0 0 chr15 41017070 41017094 -44678660 + (CA)n Simple_repeat Simple_repeat 2 25 0 197 273 0 0 chr15 41017100 41017144 -44678610 - MER5B DNA MER1_type -134 44 1 2137 122 3 0 chr15 41017159 41017455 -44678299 - AluSg SINE Alu -13 297 1 250 200 368 0 chr15 41017773 41017898 -44677856 + MER5B DNA MER1_type 2 172 -6 1349 146 49 0 chr15 41018388 41018614 -44677140 - L1MA5 LINE L1 -6 6294 6058 2348 69 14 0 chr15 41018627 41018917 -44676837 - AluY SINE Alu -17 294 1 230 196 22 0 chr15 41019157 41019203 -44676551 - MIR SINE MIR -66 142 96 1999 132 4 7 chr15 41019542 41019823 -44675931 + AluSx SINE Alu 1 280 -32 21 23 0 47 chr15 41021637 41021659 -44674095 + AT_rich Low_complexity Low_complexity 1 22 -19 2338 91 3 3 chr15 41021659 41021957 -44673797 + AluSx SINE Alu 1 298 -14 21 23 0 47 chr15 41021957 41021977 -44673777 + AT_rich Low_complexity Low_complexity 22 41 0 305 239 15 62 chr15 41022722 41022852 -44672902 + L1MC5 LINE L1 7813 7936 -25 2306 85 3 0 chr15 41023797 41024091 -44671663 - AluY SINE Alu -16 295 1 343 214 0 0 chr15 41024091 41024147 -44671607 - Tigger7 DNA MER2_type -2405 82 27 749 311 27 54 chr15 41024168 41024609 -44671145 - MLT1K LTR MaLR -12 576 148 409 349 15 0 chr15 41024906 41025038 -44670716 - L2 LINE L2 -1 3271 3138 2402 88 3 0 chr15 41025077 41025371 -44670383 + AluSc SINE Alu 1 295 -14 2364 76 0 30 chr15 41026537 41026839 -44668915 - AluY SINE Alu -18 293 1 279 0 0 0 chr15 41027116 41027147 -44668607 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 161 0 0 chr15 41027397 41027428 -44668326 + L2 LINE L2 3279 3309 -4 285 164 82 0 chr15 41029995 41030056 -44665698 - MLT1K LTR MaLR -30 558 493 641 185 22 30 chr15 41030900 41031035 -44664719 - FLAM_C SINE Alu -8 135 2 390 21 0 0 chr15 41031077 41031124 -44664630 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 249 310 62 35 chr15 41031125 41031238 -44664516 - L2 LINE L2 -25 3247 3132 244 289 48 38 chr15 41031505 41031626 -44664128 - MER5B DNA MER1_type -51 127 17 3543 128 25 4 chr15 41032405 41032920 -44662834 - MER1A DNA MER1_type -1 526 1 2032 126 18 0 chr15 41032991 41033115 -44662639 + AluSg SINE Alu 1 121 -189 315 0 0 0 chr15 41033115 41033150 -44662604 + (CA)n Simple_repeat Simple_repeat 2 36 0 2032 126 18 0 chr15 41033150 41033311 -44662443 + AluSg SINE Alu 121 291 -19 759 242 111 5 chr15 41033618 41033808 -44661946 - MER20 DNA MER1_type -9 210 1 3358 199 24 2 chr15 41033902 41034540 -44661214 - MER82 DNA MER2_type 0 653 2 234 261 152 11 chr15 41034671 41034763 -44660991 - L1ME LINE L1 -490 5631 5527 2181 97 38 0 chr15 41034815 41035105 -44660649 + AluSx SINE Alu 1 301 -11 22 35 0 0 chr15 41035262 41035291 -44660463 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr15 41035405 41035433 -44660321 + AT_rich Low_complexity Low_complexity 1 28 0 282 307 115 24 chr15 41037205 41037492 -44658262 - L1ME LINE L1 -1098 5048 4736 358 300 118 35 chr15 41037533 41037820 -44657934 - L1ME LINE L1 -1436 4710 4400 1651 168 57 20 chr15 41037902 41038200 -44657554 - AluJb SINE Alu -3 309 1 296 303 86 12 chr15 41038257 41038419 -44657335 - L1P LINE L1 -1911 4235 4062 1963 66 4 46 chr15 41039183 41039442 -44656312 - AluSq SINE Alu -65 248 1 3576 103 14 59 chr15 41040054 41040646 -44655108 - MER34B LTR ERV1 0 565 1 946 113 0 0 chr15 41041841 41041974 -44653780 - AluSg/x SINE Alu -11 301 169 1402 90 6 0 chr15 41042050 41042227 -44653527 - AluSq SINE Alu -135 178 1 252 0 0 0 chr15 41044130 41044158 -44651596 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6164 84 27 3 chr15 41044160 41044506 -44651248 - L1PB1 LINE L1 -13 6138 5802 585 0 0 0 chr15 41044506 41044571 -44651183 + (CA)n Simple_repeat Simple_repeat 1 65 0 6164 84 27 3 chr15 41044571 41045280 -44650474 - L1PB1 LINE L1 -349 5802 5063 2280 103 7 3 chr15 41046224 41046526 -44649228 + AluSx SINE Alu 1 303 -9 203 259 170 45 chr15 41047322 41047434 -44648320 - L2 LINE L2 -10 3262 3137 279 0 0 0 chr15 41047510 41047541 -44648213 + (TG)n Simple_repeat Simple_repeat 2 32 0 361 191 96 0 chr15 41047541 41047635 -44648119 + MIR SINE MIR 104 206 -56 354 281 47 23 chr15 41047872 41048000 -44647754 - L2 LINE L2 -1 3312 3182 749 182 0 0 chr15 41048220 41048341 -44647413 - AluJo SINE Alu -9 303 183 518 234 37 0 chr15 41048344 41048451 -44647303 - AluJo SINE Alu -200 112 2 30 0 0 0 chr15 41048455 41048485 -44647269 + AT_rich Low_complexity Low_complexity 1 30 0 468 298 116 35 chr15 41048496 41049003 -44646751 - L1ME4a LINE L1 -20 6101 5554 1911 137 0 14 chr15 41049152 41049437 -44646317 + AluSx SINE Alu 1 281 -31 1061 235 155 31 chr15 41050477 41050923 -44644831 - MLT1D LTR MaLR 0 505 5 282 268 14 0 chr15 41052099 41052170 -44643584 + CT-rich Low_complexity Low_complexity 2 73 0 966 209 33 0 chr15 41052217 41052428 -44643326 - MER20 DNA MER1_type -1 218 1 369 0 0 0 chr15 41052503 41052544 -44643210 + (TG)n Simple_repeat Simple_repeat 2 42 0 583 231 111 32 chr15 41053215 41053431 -44642323 - L1MC5 LINE L1 -52 7909 7677 1918 122 0 28 chr15 41053837 41054124 -44641630 - AluJo SINE Alu -12 300 22 183 156 0 0 chr15 41055357 41055389 -44640365 + T-rich Low_complexity Low_complexity 1 32 0 1793 175 6 16 chr15 41055894 41056209 -44639545 + AluJo SINE Alu 1 312 0 345 130 65 26 chr15 41056331 41056408 -44639346 - MER5C DNA MER1_type -196 128 49 258 32 0 0 chr15 41056495 41056526 -44639228 + (CA)n Simple_repeat Simple_repeat 2 32 0 520 111 0 0 chr15 41057098 41057179 -44638575 + AluS SINE Alu 229 309 -1 189 0 0 0 chr15 41057482 41057503 -44638251 + (T)n Simple_repeat Simple_repeat 1 21 0 2467 74 3 3 chr15 41058049 41058359 -44637395 + AluSp SINE Alu 2 311 -2 500 220 6 71 chr15 41058406 41058574 -44637180 + L1MC5 LINE L1 7749 7905 -56 3814 63 2 0 chr15 41058584 41059057 -44636697 - L1PA6 LINE L1 -4 6150 5677 2303 96 3 0 chr15 41059177 41059470 -44636284 + AluSx SINE Alu 7 300 -12 1047 191 43 9 chr15 41061067 41061277 -44634477 - L1MC1 LINE L1 -1 6332 6116 255 103 0 0 chr15 41061280 41061319 -44634435 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1833 161 0 0 chr15 41061323 41061597 -44634157 - AluJb SINE Alu -38 274 1 1971 139 5 46 chr15 41061597 41061763 -44633991 - L1MC1 LINE L1 -206 6127 5956 2183 109 16 3 chr15 41061763 41062066 -44633688 - AluSq SINE Alu -6 307 1 1971 139 5 46 chr15 41062066 41062262 -44633492 - L1MC1 LINE L1 -377 5956 5780 2337 114 0 0 chr15 41062648 41062956 -44632798 + AluSq SINE Alu 1 308 -5 483 18 0 0 chr15 41063079 41063135 -44632619 + (CA)n Simple_repeat Simple_repeat 1 56 0 315 333 44 7 chr15 41063230 41063365 -44632389 - L2 LINE L2 -18 3254 3115 269 225 70 0 chr15 41064614 41064685 -44631069 - L2 LINE L2 -48 3265 3190 249 323 8 39 chr15 41066212 41066342 -44629412 - MIR SINE MIR -12 250 125 342 259 168 5 chr15 41066826 41067003 -44628751 - MIR SINE MIR -40 222 19 370 273 154 63 chr15 41068339 41068776 -44626978 - L1ME4a LINE L1 -195 5926 5413 2382 75 0 0 chr15 41068776 41069068 -44626686 - AluY SINE Alu -19 292 1 370 273 154 63 chr15 41069068 41069174 -44626580 - L1ME4a LINE L1 -708 5413 5318 2039 127 14 0 chr15 41069245 41069529 -44626225 + AluSq SINE Alu 5 292 -21 418 101 13 13 chr15 41069529 41069608 -44626146 + (TA)n Simple_repeat Simple_repeat 1 79 0 3571 151 42 49 chr15 41071514 41072334 -44623420 - MER4D LTR ERV1 0 903 1 342 0 0 0 chr15 41073122 41073160 -44622594 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr15 41076230 41076251 -44619503 + AT_rich Low_complexity Low_complexity 1 21 0 1637 103 0 0 chr15 41076314 41076528 -44619226 - AluSg/x SINE Alu -16 294 81 279 185 252 0 chr15 41078116 41078235 -44617519 - L1ME4a LINE L1 -3 6118 5970 180 0 0 0 chr15 41078851 41078871 -44616883 + (T)n Simple_repeat Simple_repeat 1 20 0 1489 167 51 27 chr15 41079275 41079569 -44616185 - AluJo SINE Alu -11 301 1 607 285 58 52 chr15 41079877 41080089 -44615665 - L1MC4a LINE L1 -1879 5929 5713 2234 98 3 3 chr15 41080089 41080385 -44615369 + AluSx SINE Alu 1 296 -16 607 285 58 52 chr15 41080385 41080502 -44615252 - L1MC4a LINE L1 -2095 5713 5598 207 139 0 0 chr15 41080502 41080538 -44615216 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 336 24 0 0 chr15 41083094 41083135 -44612619 + (CG)n Simple_repeat Simple_repeat 2 42 0 5098 133 94 15 chr15 41083630 41083921 -44611833 + L1MA8 LINE L1 5191 5458 -833 2299 72 38 0 chr15 41083921 41084212 -44611542 + AluSq SINE Alu 1 302 -11 5098 133 94 15 chr15 41084212 41084774 -44610980 + L1MA8 LINE L1 5458 6139 -152 2361 45 42 7 chr15 41084774 41085061 -44610693 + AluY SINE Alu 1 297 -14 5098 133 94 15 chr15 41085061 41085215 -44610539 + L1MA8 LINE L1 6139 6280 -11 2055 134 7 10 chr15 41085238 41085536 -44610218 + AluSx SINE Alu 1 297 -15 263 252 57 49 chr15 41085552 41085675 -44610079 - HAL1 LINE L1 -6 2501 2378 2404 127 8 14 chr15 41086464 41086827 -44608927 - MER46B DNA MER2_type 0 236 1 192 375 97 0 chr15 41086891 41087035 -44608719 - MIR SINE MIR -8 254 97 1302 101 0 5 chr15 41087909 41088098 -44607656 - L1 LINE L1 -1315 4831 4644 22 35 0 0 chr15 41088122 41088151 -44607603 + AT_rich Low_complexity Low_complexity 1 29 0 2334 235 54 30 chr15 41141194 41141900 -44553854 - L1MDb LINE L1 -4153 2387 1665 252 0 0 0 chr15 41141900 41141928 -44553826 + (T)n Simple_repeat Simple_repeat 1 28 0 423 98 0 65 chr15 41141930 41142022 -44553732 - SVA Other Other -627 759 674 5685 70 23 54 chr15 41142036 41143087 -44552667 - SVA Other Other -520 866 23 415 271 16 29 chr15 41143289 41143507 -44552247 + L1MEc LINE L1 783 969 -5101 2955 218 62 36 chr15 41143526 41144146 -44551608 - L1MDb LINE L1 -4861 1679 1051 1559 145 78 46 chr15 41144146 41144428 -44551326 - AluJo SINE Alu -21 291 1 2955 218 62 36 chr15 41144428 41144718 -44551036 - L1MDb LINE L1 -5489 1051 770 687 281 79 47 chr15 41144874 41145215 -44550539 - L1MDb LINE L1 -6155 385 34 2245 110 0 7 chr15 41145503 41145804 -44549950 + AluSx SINE Alu 1 299 -13 2158 103 3 28 chr15 41146412 41146732 -44549022 - AluSx SINE Alu 0 312 1 2199 120 0 0 chr15 41147007 41147299 -44548455 - AluSx SINE Alu -20 292 1 2274 103 0 13 chr15 41147399 41147711 -44548043 - AluSq SINE Alu -5 308 1 198 167 0 0 chr15 41147934 41147970 -44547784 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 296 27 27 chr15 41147971 41148083 -44547671 + MER5A DNA MER1_type 77 177 -1 1118 188 11 71 chr15 41149613 41149670 -44546084 + L1MD3 LINE L1 7730 7789 -206 2529 62 7 3 chr15 41149670 41149975 -44545779 + AluY SINE Alu 1 306 -5 1118 188 11 71 chr15 41149975 41150199 -44545555 + L1MD3 LINE L1 7789 7994 -1 577 278 94 31 chr15 41150308 41150628 -44545126 + L1ME LINE L1 5480 5819 -302 2404 106 0 0 chr15 41150661 41150973 -44544781 + AluSx SINE Alu 1 312 0 1406 226 85 32 chr15 41151123 41151557 -44544197 + MER74B LTR ERVL 89 545 -77 439 287 44 13 chr15 41152829 41153011 -44542743 + MIR SINE MIR 16 202 -60 2109 138 0 0 chr15 41154891 41155194 -44540560 + AluSx SINE Alu 1 303 0 3061 188 25 7 chr15 41155444 41156034 -44539720 + L1MB8 LINE L1 5472 6072 -106 1022 190 139 0 chr15 41156046 41156262 -44539492 - L1MD2 LINE L1 -59 6300 6055 * 1550 263 57 2 chr15 41156242 41156717 -44539037 - L1M4 LINE L1 -1215 4931 4431 3578 148 8 3 chr15 41156925 41157525 -44538229 - L1PB3 LINE L1 0 6154 5552 389 261 87 0 chr15 41157974 41158089 -44537665 + MIR SINE MIR 82 206 -56 1366 158 147 19 chr15 41158131 41158397 -44537357 - AluJb SINE Alu -2 300 1 1150 194 133 7 chr15 41158459 41158737 -44537017 - MER58B DNA MER1_type -26 315 3 446 244 209 25 chr15 41158804 41159005 -44536749 + MIR SINE MIR 13 250 -12 314 298 44 19 chr15 41161538 41161696 -44534058 - L1ME4a LINE L1 -227 5894 5733 269 171 0 0 chr15 41161697 41161738 -44534016 + 5S rRNA rRNA 2 42 -79 454 298 107 8 chr15 41161741 41161983 -44533771 - L1ME4a LINE L1 -377 5744 5479 501 236 104 0 chr15 41163622 41163766 -44531988 + MIR SINE MIR 56 214 -48 955 183 78 58 chr15 41164227 41164484 -44531270 + HAL1 LINE L1 2246 2507 0 1650 229 46 33 chr15 41164624 41165170 -44530584 - L1M4 LINE L1 -3276 2870 2318 208 308 26 26 chr15 41165403 41165481 -44530273 - MIR3 SINE MIR -26 182 105 2578 80 0 0 chr15 41165526 41165837 -44529917 - AluY SINE Alu 0 311 1 306 0 0 0 chr15 41171984 41172018 -44523736 + (TG)n Simple_repeat Simple_repeat 2 35 0 324 264 72 16 chr15 41172094 41172219 -44523535 - L1ME LINE L1 -313 5808 5677 330 270 94 64 chr15 41172513 41172780 -44522974 - L1ME LINE L1 -481 5640 5366 29 47 0 0 chr15 41172827 41172870 -44522884 + AT_rich Low_complexity Low_complexity 1 43 0 615 259 81 20 chr15 41172907 41173154 -44522600 + L1ME LINE L1 5558 5819 -302 389 343 12 13 chr15 41174610 41174795 -44520959 + MER5A DNA MER1_type 3 176 -2 2325 95 0 16 chr15 41175874 41176179 -44519575 + AluSq SINE Alu 1 300 -13 196 237 186 0 chr15 41176403 41176462 -44519292 + L2 LINE L2 3241 3310 -3 1758 186 0 3 chr15 41176563 41176858 -44518896 - AluJo SINE Alu -18 294 1 535 286 167 5 chr15 41178528 41178738 -44517016 + MIR SINE MIR 16 259 -3 716 277 16 0 chr15 41178758 41178942 -44516812 - MER5A DNA MER1_type -2 187 1 444 244 167 6 chr15 41179036 41179192 -44516562 + MER5A DNA MER1_type 9 189 0 577 260 29 12 chr15 41179201 41179374 -44516380 + MER5B DNA MER1_type 3 178 0 233 358 86 13 chr15 41179860 41180011 -44515743 - MIR3 SINE MIR -3 205 44 26 0 0 0 chr15 41180715 41180741 -44515013 + AT_rich Low_complexity Low_complexity 1 26 0 2423 85 3 0 chr15 41182554 41182849 -44512905 - AluSg SINE Alu -14 296 1 230 338 13 0 chr15 41182910 41182987 -44512767 - L1MC5 LINE L1 -78 7883 7806 378 61 0 0 chr15 41183052 41183101 -44512653 + (CA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr15 41183572 41183613 -44512141 + AT_rich Low_complexity Low_complexity 1 41 0 843 171 119 5 chr15 41183615 41183825 -44511929 - MER69 DNA AcHobo -106 2420 2187 415 331 19 7 chr15 41183834 41183988 -44511766 - MER69 DNA AcHobo -1584 942 787 * 874 271 39 36 chr15 41183983 41184263 -44511491 - MER69 DNA AcHobo -707 519 239 21 36 0 0 chr15 41185106 41185134 -44510620 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 126 34 chr15 41185476 41185599 -44510155 + MIR3 SINE MIR 61 196 -12 273 247 227 0 chr15 41185658 41185755 -44509999 - L2 LINE L2 0 3272 3154 294 322 93 0 chr15 41186004 41186122 -44509632 - L2 LINE L2 -10 3262 3134 186 156 0 0 chr15 41186160 41186205 -44509549 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2344 108 0 10 chr15 41187714 41188028 -44507726 - AluSx SINE Alu -1 311 1 238 344 104 0 chr15 41188061 41188157 -44507597 + L2 LINE L2 3190 3295 -18 2174 107 10 23 chr15 41188261 41188570 -44507184 + AluSp SINE Alu 1 305 -8 536 223 38 25 chr15 41188579 41188736 -44507018 - MIR SINE MIR -37 225 67 2328 102 0 13 chr15 41189613 41189928 -44505826 - AluSx SINE Alu -1 311 1 306 0 0 0 chr15 41190332 41190366 -44505388 + (T)n Simple_repeat Simple_repeat 1 34 0 493 292 137 2 chr15 41190956 41191364 -44504390 + L2 LINE L2 1737 2199 -1115 183 80 0 0 chr15 41193057 41193082 -44502672 + (TCTCG)n Simple_repeat Simple_repeat 2 26 0 2331 108 3 0 chr15 41193082 41193388 -44502366 - AluSx SINE Alu -5 307 1 299 289 21 10 chr15 41193598 41193705 -44502049 - MIR SINE MIR -65 143 47 1655 179 55 0 chr15 41195065 41195356 -44500398 + AluJo SINE Alu 1 307 -5 2269 112 0 7 chr15 41195472 41195775 -44499979 - AluSq SINE Alu -11 302 2 1823 135 21 11 chr15 41195783 41196064 -44499690 - AluJb SINE Alu -24 288 5 26 30 0 0 chr15 41197972 41198005 -44497749 + AT_rich Low_complexity Low_complexity 1 33 0 233 173 77 0 chr15 41198446 41198498 -44497256 + Zaphod DNA AcHobo 1175 1230 -2801 320 281 55 0 chr15 41199451 41199579 -44496175 - L3 LINE CR1 -272 1305 1171 1067 184 118 76 chr15 41200387 41200403 -44495351 - L1MC5 LINE L1 -259 7702 7688 2113 130 6 16 chr15 41200403 41200718 -44495036 + AluSx SINE Alu 1 312 0 1067 184 118 76 chr15 41200718 41200897 -44494857 - L1MC5 LINE L1 -273 7688 7518 905 193 42 0 chr15 41200897 41201109 -44494645 - L1MA7 LINE L1 -5 6286 6066 1067 184 118 76 chr15 41201109 41201428 -44494326 - L1MC5 LINE L1 -443 7518 7165 2386 102 0 3 chr15 41201438 41201742 -44494012 + AluSx SINE Alu 8 310 -2 311 330 35 0 chr15 41203459 41203574 -44492180 + MIR3 SINE MIR 66 184 -24 490 178 103 182 chr15 41203687 41203929 -44491825 + MER58A DNA MER1_type 2 224 0 224 308 71 24 chr15 41207298 41207467 -44488287 - MIR3 SINE MIR -15 193 17 239 137 98 0 chr15 41208349 41208400 -44487354 + Zaphod DNA AcHobo 1175 1230 -2801 434 260 67 81 chr15 41208552 41209044 -44486710 + L1ME LINE L1 2131 2615 -3531 338 217 108 25 chr15 41209044 41209164 -44486590 + L1ME LINE L1 3144 3273 -2873 620 242 29 57 chr15 41209537 41209781 -44485973 - L2 LINE L2 0 3313 3077 2388 62 27 0 chr15 41209781 41210073 -44485681 - AluY SINE Alu -11 300 1 517 299 86 44 chr15 41210169 41211023 -44484731 + L1ME LINE L1 3881 4786 -1360 305 257 74 54 chr15 41211038 41211186 -44484568 + L1ME LINE L1 5127 5277 -869 239 292 50 8 chr15 41211243 41211363 -44484391 + L1ME LINE L1 5351 5475 -691 2310 93 10 3 chr15 41211535 41211837 -44483917 + AluSp SINE Alu 1 304 -9 1336 186 89 0 chr15 41212029 41212308 -44483446 - AluJo SINE Alu 0 302 1 1111 196 71 58 chr15 41213186 41213497 -44482257 + MLT1A1 LTR MaLR 1 315 -50 22 70 0 0 chr15 41213500 41213543 -44482211 + AT_rich Low_complexity Low_complexity 1 43 0 301 109 22 0 chr15 41213551 41213597 -44482157 + MLT1A1 LTR MaLR 346 392 -4 708 148 66 66 chr15 41213803 41213920 -44481834 - MER5A DNA MER1_type 0 189 70 2596 50 0 3 chr15 41213920 41214223 -44481531 - AluY SINE Alu -8 303 2 708 148 66 66 chr15 41214223 41214288 -44481466 - MER5A DNA MER1_type -118 71 7 239 303 56 11 chr15 41214557 41214646 -44481108 - MIR SINE MIR -57 151 59 336 231 0 13 chr15 41214720 41214798 -44480956 + MARNA DNA Mariner 149 225 -361 1673 171 65 98 chr15 41214798 41215306 -44480448 + L1MA9 LINE L1 5784 6274 -38 204 263 26 53 chr15 41217372 41217448 -44478306 + MIR SINE MIR 66 139 -69 2980 185 58 4 chr15 41217585 41218721 -44477033 - L1MB7 LINE L1 -254 5930 4738 621 231 53 82 chr15 41218713 41218995 -44476759 - L1MC5 LINE L1 -427 7534 7261 * 517 204 182 51 chr15 41219121 41219434 -44476320 - L1MC5 LINE L1 -722 7239 6886 579 162 110 19 chr15 41219444 41219598 -44476156 + L1MC5 LINE L1 7745 7912 -49 * 641 274 129 74 chr15 41219596 41220098 -44475656 - L1MC4a LINE L1 -900 6908 6435 264 30 0 0 chr15 41220098 41220131 -44475623 + (TG)n Simple_repeat Simple_repeat 2 34 0 641 274 129 74 chr15 41220131 41220626 -44475128 - L1MC4a LINE L1 -1373 6435 5856 1726 148 48 28 chr15 41221537 41221827 -44473927 - AluSx SINE Alu -16 296 1 313 359 15 30 chr15 41223591 41223643 -44472111 - MIR SINE MIR -66 196 145 2059 119 3 3 chr15 41223643 41223936 -44471818 - AluSx SINE Alu -15 297 5 313 359 15 30 chr15 41223936 41224081 -44471673 - MIR SINE MIR -117 145 2 213 190 0 51 chr15 41224695 41224774 -44470980 + CT-rich Low_complexity Low_complexity 2 76 0 2127 104 35 0 chr15 41224832 41225120 -44470634 - AluSp SINE Alu -15 298 1 22 56 0 0 chr15 41225143 41225179 -44470575 + AT_rich Low_complexity Low_complexity 1 36 0 630 149 0 0 chr15 41233913 41234047 -44461707 + (G)n Simple_repeat Simple_repeat 1 134 0 2039 119 0 10 chr15 41234916 41235211 -44460543 + AluSc SINE Alu 1 292 -17 29 28 0 0 chr15 41235927 41235963 -44459791 + AT_rich Low_complexity Low_complexity 1 36 0 322 299 57 77 chr15 41235989 41236111 -44459643 + MIR3 SINE MIR 1 119 -143 1704 163 27 24 chr15 41236111 41236423 -44459331 - AluJo SINE Alu -16 296 1 322 299 57 77 chr15 41236423 41236516 -44459238 + MIR3 SINE MIR 119 212 -50 207 0 0 0 chr15 41237239 41237262 -44458492 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2094 59 0 0 chr15 41237378 41237632 -44458122 - L1PA8 LINE L1 -7 6165 5912 408 88 0 0 chr15 41237893 41237950 -44457804 + (CA)n Simple_repeat Simple_repeat 2 58 0 344 225 271 23 chr15 41238253 41238382 -44457372 + MIR SINE MIR 9 169 -93 1627 226 75 25 chr15 41238680 41239118 -44456636 + MLT1C LTR MaLR 6 465 -2 261 329 95 0 chr15 41239120 41239257 -44456497 - MIR3 SINE MIR -55 153 4 456 264 28 33 chr15 41239686 41239868 -44455886 + L1MB8 LINE L1 5998 6178 0 405 296 76 23 chr15 41239868 41240040 -44455714 + L1ME LINE L1 1880 2060 -4480 1550 296 88 25 chr15 41240053 41241019 -44454735 + L1ME LINE L1 4355 5381 -1159 360 0 0 0 chr15 41241081 41241121 -44454633 + (CA)n Simple_repeat Simple_repeat 2 41 0 475 178 141 87 chr15 41241121 41241153 -44454601 + L1MD2 LINE L1 6155 6184 -175 1905 76 7 22 chr15 41241153 41241428 -44454326 + AluY SINE Alu 39 309 -2 475 178 141 87 chr15 41241428 41241580 -44454174 + L1MD2 LINE L1 6184 6349 -10 * 558 263 131 41 chr15 41241579 41242147 -44453607 + L1ME LINE L1 5404 6002 -562 390 132 53 0 chr15 41242249 41242325 -44453429 - L1MB7 LINE L1 -236 5948 5869 2013 154 89 44 chr15 41242331 41242757 -44452997 - L1MB7 LINE L1 -380 5804 5325 1570 169 13 33 chr15 41242757 41243059 -44452695 - AluJo SINE Alu -12 300 5 2013 154 89 44 chr15 41243059 41243182 -44452572 - L1MB7 LINE L1 -859 5325 5209 650 239 132 12 chr15 41243278 41243521 -44452233 - MLT1J LTR MaLR -171 340 69 228 275 14 29 chr15 41243543 41243612 -44452142 - MIR SINE MIR -174 88 21 2080 109 27 0 chr15 41243707 41244000 -44451754 - AluSx SINE Alu -11 301 1 2029 121 13 3 chr15 41245030 41245335 -44450419 - AluSg SINE Alu -2 308 1 586 270 45 40 chr15 41245336 41245558 -44450196 - MARNA DNA Mariner -192 394 172 216 323 0 0 chr15 41245636 41245698 -44450056 + L2 LINE L2 3231 3292 -21 198 71 0 0 chr15 41246058 41246086 -44449668 + (TG)n Simple_repeat Simple_repeat 2 29 0 2264 90 0 0 chr15 41246133 41246434 -44449320 + AluSc SINE Alu 1 301 -8 218 203 95 54 chr15 41249012 41249086 -44446668 + L2 LINE L2 3223 3299 -14 202 283 0 0 chr15 41249258 41249304 -44446450 - L2 LINE L2 -6 3307 3262 738 158 17 0 chr15 41249619 41249739 -44446015 - MLT1I LTR MaLR 0 409 288 537 225 118 32 chr15 41249790 41249977 -44445777 - MLT1I LTR MaLR -206 203 1 294 36 18 71 chr15 41250732 41250788 -44444966 + L1PA4 LINE L1 6103 6155 0 254 367 55 18 chr15 41251533 41251808 -44443946 + L2 LINE L2 2469 2753 -561 1452 169 54 37 chr15 41252014 41252309 -44443445 - AluJo SINE Alu -12 300 1 251 292 42 14 chr15 41253325 41253397 -44442357 + L2 LINE L2 3199 3272 0 763 253 45 10 chr15 41254443 41254645 -44441109 - MIR SINE MIR -41 221 13 1384 187 181 19 chr15 41255392 41255767 -44439987 + MER63B DNA MER1_type 1 436 0 335 321 124 22 chr15 41256981 41257118 -44438636 + L2 LINE L2 3122 3272 0 3531 134 4 9 chr15 41257402 41257932 -44437822 + MER1A DNA MER1_type 1 527 0 187 293 0 0 chr15 41258798 41258839 -44436915 + MIR SINE MIR 30 70 -138 555 345 187 13 chr15 41259013 41259872 -44435882 - L2 LINE L2 -2209 1105 97 202 229 0 42 chr15 41260086 41260134 -44435620 + L3b LINE CR1 1514 1559 -24 * 219 250 18 0 chr15 41260105 41260161 -44435593 + MIR3 SINE MIR 152 208 0 500 252 143 0 chr15 41260447 41260594 -44435160 - MIR SINE MIR 0 262 95 295 365 16 8 chr15 41260641 41260767 -44434987 - MIR3 SINE MIR -73 135 9 854 185 32 13 chr15 41260806 41260963 -44434791 + MLT1F LTR MaLR 381 540 -2 1060 198 58 10 chr15 41261180 41261387 -44434367 - MER58A DNA MER1_type -7 217 1 1090 240 131 3 chr15 41261785 41262068 -44433686 - MLT1F LTR MaLR -218 324 6 1553 138 4 4 chr15 41262168 41262415 -44433339 - AluJb SINE Alu -1 311 65 241 230 95 14 chr15 41262608 41262682 -44433072 + LTR67 LTR ERVL 3 82 -475 330 205 43 60 chr15 41262700 41262785 -44432969 + LTR67 LTR ERVL 433 517 -40 2028 103 0 51 chr15 41262785 41263096 -44432658 + AluSx SINE Alu 17 311 -1 330 205 43 60 chr15 41263096 41263127 -44432627 + LTR67 LTR ERVL 517 547 -10 622 287 115 10 chr15 41263226 41263435 -44432319 + MIR SINE MIR 22 252 -10 199 339 74 25 chr15 41264364 41264485 -44431269 + L2 LINE L2 3180 3306 -7 695 258 18 10 chr15 41265281 41265469 -44430285 - MIR SINE MIR -62 146 3 21 0 0 0 chr15 41265580 41265601 -44430153 + AT_rich Low_complexity Low_complexity 1 21 0 3348 234 25 20 chr15 41265820 41266666 -44429088 + Zaphod DNA AcHobo 14 863 -3168 1586 193 37 11 chr15 41266708 41267060 -44428694 + MLT1A1 LTR MaLR 5 365 0 351 255 11 11 chr15 41267727 41267821 -44427933 + Zaphod DNA AcHobo 14 107 -3924 472 247 13 100 chr15 41268001 41268153 -44427601 - MIR3 SINE MIR -42 166 30 806 201 6 12 chr15 41268567 41268736 -44427018 - FRAM SINE Alu -8 168 1 595 222 129 16 chr15 41268993 41269187 -44426567 - MER69 DNA AcHobo -727 1799 1584 1154 185 0 5 chr15 41269238 41269460 -44426294 + AluJo SINE Alu 87 307 -5 248 292 32 0 chr15 41269712 41269794 -44425960 - MER69 DNA AcHobo -87 2439 5 418 222 12 0 chr15 41270142 41270223 -44425531 - L2 LINE L2 -2 3311 3230 1825 216 75 37 chr15 41270292 41270810 -44424944 + MLT1F LTR MaLR 5 542 0 347 260 26 0 chr15 41273209 41273286 -44422468 - MIR SINE MIR -70 192 114 345 100 0 0 chr15 41273408 41273458 -44422296 + (CA)n Simple_repeat Simple_repeat 2 51 0 232 326 90 45 chr15 41273785 41274030 -44421724 + L2 LINE L2 2829 3084 -188 309 274 26 26 chr15 41274282 41274395 -44421359 + MIR SINE MIR 96 208 -54 737 235 131 5 chr15 41275519 41275740 -44420014 + L1ME3A LINE L1 5920 6168 -2 625 294 123 0 chr15 41276108 41276312 -44419442 - MIR SINE MIR -16 246 18 314 263 40 0 chr15 41276554 41276630 -44419124 - MIR SINE MIR -67 195 117 24 32 0 0 chr15 41277669 41277700 -44418054 + AT_rich Low_complexity Low_complexity 1 31 0 1097 154 0 6 chr15 41277894 41278069 -44417685 + AluJb SINE Alu 116 289 -23 207 0 0 0 chr15 41278088 41278111 -44417643 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 318 279 197 8 chr15 41278154 41278398 -44417356 + L1ME4a LINE L1 5712 6001 -120 422 197 217 28 chr15 41279070 41279235 -44416519 - MIR SINE MIR -54 154 2 360 0 0 0 chr15 41279686 41279726 -44416028 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 158 0 0 chr15 41279791 41279829 -44415925 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1891 114 0 4 chr15 41280111 41280430 -44415324 + AluSx SINE Alu 15 332 0 737 107 0 0 chr15 41280741 41280844 -44414910 + AluSp/q SINE Alu 195 297 -16 335 285 117 30 chr15 41281000 41281694 -44414060 - L1MDa LINE L1 -3180 3202 2449 400 136 0 30 chr15 41281696 41281762 -44413992 + L2 LINE L2 3250 3313 0 403 269 98 52 chr15 41281769 41281997 -44413757 - L1MDa LINE L1 -3939 2443 2189 480 291 44 30 chr15 41282062 41282315 -44413439 - MIR3 SINE MIR 0 262 4 379 282 36 18 chr15 41283350 41283460 -44412294 + MER5A DNA MER1_type 55 166 -23 2125 242 21 35 chr15 41283545 41284108 -44411646 + LTR60 LTR ERV1 1 555 -31 308 330 11 0 chr15 41284266 41284360 -44411394 + MIR SINE MIR 51 145 -63 554 269 125 19 chr15 41284483 41284691 -44411063 - MIR SINE MIR -14 248 19 195 321 79 21 chr15 41284686 41284826 -44410928 - L2 LINE L2 -971 2343 2196 * 1748 178 0 0 chr15 41285941 41286233 -44409521 - AluJb SINE Alu -20 292 1 414 297 36 42 chr15 41286897 41287062 -44408692 + MER5A DNA MER1_type 21 184 -5 185 268 0 0 chr15 41287138 41287156 -44408598 - L2 LINE L2 -2 3311 3271 185 43 0 0 chr15 41287156 41287179 -44408575 - MIR SINE MIR -14 248 226 695 68 42 8 chr15 41287187 41287305 -44408449 + CT-rich Low_complexity Low_complexity 3 124 0 781 201 0 21 chr15 41287307 41287451 -44408303 - FLAM_A SINE Alu -1 141 1 893 217 42 0 chr15 41287456 41287645 -44408109 - MIR SINE MIR -46 216 20 192 276 41 71 chr15 41287795 41287893 -44407861 - MIR SINE MIR -67 195 101 383 217 92 26 chr15 41289057 41289209 -44406545 - MER5B DNA MER1_type -16 162 1 200 368 29 0 chr15 41289385 41289453 -44406301 + L2 LINE L2 3151 3220 -52 2058 80 4 7 chr15 41289508 41289783 -44405971 - AluSg SINE Alu -10 300 27 325 230 40 50 chr15 41289827 41289927 -44405827 + MIR SINE MIR 118 216 -46 180 279 98 0 chr15 41289955 41290016 -44405738 + L2 LINE L2 2964 3030 -242 383 168 61 92 chr15 41290957 41291088 -44404666 + MER103 DNA DNA 21 147 -19 231 227 0 0 chr15 41291105 41291171 -44404583 + T-rich Low_complexity Low_complexity 5 70 0 1613 155 45 24 chr15 41291324 41291615 -44404139 + AluJo SINE Alu 1 297 -15 248 299 48 5 chr15 41291635 41291822 -44403932 + L1M4 LINE L1 3805 3999 -2147 258 274 48 43 chr15 41291994 41292224 -44403530 + L1M4 LINE L1 4369 4599 -1547 215 235 35 24 chr15 41292466 41292551 -44403203 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 * 217 341 16 8 chr15 41292502 41292628 -44403126 + (CATA)n Simple_repeat Simple_repeat 3 129 0 453 262 62 0 chr15 41292631 41292776 -44402978 + L1ME4a LINE L1 5965 6118 -3 2216 96 20 0 chr15 41292874 41293177 -44402577 + AluSp SINE Alu 2 310 -3 241 292 108 39 chr15 41293781 41293911 -44401843 + MIR SINE MIR 14 152 -110 518 187 89 8 chr15 41294291 41294414 -44401340 + FLAM_C SINE Alu 1 133 0 275 299 81 53 chr15 41295530 41295814 -44399940 + L1MEd LINE L1 914 1205 -4914 475 324 28 6 chr15 41295882 41296064 -44399690 - MIR SINE MIR -33 229 44 658 184 0 0 chr15 41296086 41296195 -44399559 - MER81 DNA DNA -5 109 1 401 267 293 0 chr15 41296195 41296386 -44399368 + MIR SINE MIR 16 262 0 281 284 14 135 chr15 41296512 41296580 -44399174 - MER5A DNA MER1_type 0 189 144 1903 123 0 4 chr15 41296580 41296887 -44398867 + AluSx SINE Alu 12 317 0 281 284 14 135 chr15 41296887 41296958 -44398796 - MER5A DNA MER1_type -45 144 66 1081 165 10 31 chr15 41298039 41298233 -44397521 - MER3 DNA MER1_type -8 201 12 263 254 32 87 chr15 41298248 41298374 -44397380 - MER117 DNA MER1_type -4 193 75 1948 195 21 66 chr15 41298447 41298915 -44396839 - Charlie4a DNA MER1_type -1456 505 60 3034 114 7 0 chr15 41298915 41299346 -44396408 - MER57B LTR ERV1 0 434 1 1948 195 21 66 chr15 41299346 41299389 -44396365 - Charlie4a DNA MER1_type -1901 60 17 314 331 25 12 chr15 41300445 41300608 -44395146 - MIR SINE MIR 0 262 98 2208 83 3 0 chr15 41300798 41301086 -44394668 + AluSc SINE Alu 17 305 -4 1334 347 123 14 chr15 41301678 41302598 -44393156 - L2 LINE L2 -655 2659 1640 249 226 16 0 chr15 41302598 41302660 -44393094 + L1ME4a LINE L1 5960 6022 -99 2066 226 44 12 chr15 41302876 41303394 -44392360 + MLT1F LTR MaLR 2 536 -6 361 240 100 0 chr15 41303968 41304068 -44391686 + L2 LINE L2 3200 3309 -4 1417 207 11 3 chr15 41305520 41305805 -44389949 - AluJo SINE Alu -24 288 2 327 255 88 0 chr15 41305822 41305924 -44389830 - MIR SINE MIR -61 147 37 296 330 46 52 chr15 41306024 41306111 -44389643 - MIR SINE MIR -71 191 104 603 51 71 20 chr15 41306111 41306209 -44389545 - L1MA3 LINE L1 0 6305 6203 296 330 46 52 chr15 41306209 41306294 -44389460 - MIR SINE MIR -158 104 20 284 169 58 17 chr15 41306981 41307153 -44388601 + (TA)n Simple_repeat Simple_repeat 1 179 0 317 307 20 10 chr15 41307160 41307261 -44388493 + L1MC4 LINE L1 6600 6701 -1341 609 232 22 38 chr15 41307261 41307446 -44388308 - MIR SINE MIR 0 262 81 729 164 23 23 chr15 41307685 41307813 -44387941 + FLAM_C SINE Alu 6 133 -10 201 255 0 0 chr15 41307892 41307939 -44387815 + (TAG)n Simple_repeat Simple_repeat 3 49 0 2200 98 10 0 chr15 41308069 41308374 -44387380 - AluSx SINE Alu -4 308 1 421 236 82 60 chr15 41308374 41308536 -44387218 - MIR SINE MIR -63 145 34 184 265 157 12 chr15 41310244 41310327 -44385427 - L2 LINE L2 -40 3273 3179 264 235 0 0 chr15 41310670 41310721 -44385033 + L2 LINE L2 3263 3313 0 270 234 41 47 chr15 41310784 41310886 -44384868 + MIR SINE MIR 3 106 -102 213 39 0 0 chr15 41310888 41310914 -44384840 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 421 293 127 0 chr15 41311647 41311804 -44383950 - MIR SINE MIR 0 262 86 336 301 67 42 chr15 41312047 41312240 -44383514 + L1MC4a LINE L1 3206 3403 -2743 997 62 55 0 chr15 41312323 41312451 -44383303 + AluSg SINE Alu 47 181 -129 692 303 40 14 chr15 41312466 41312762 -44382992 + L1MC4a LINE L1 3865 4174 -1972 1767 157 74 3 chr15 41312762 41313099 -44382655 + MER46B DNA MER2_type 1 236 0 692 303 40 14 chr15 41313099 41313172 -44382582 + L1MC4a LINE L1 4174 4244 -1902 385 323 0 0 chr15 41313325 41313449 -44382305 + L1MC4a LINE L1 5786 5909 -1899 554 197 7 0 chr15 41313552 41313694 -44382060 + (CAGAC)n Simple_repeat Simple_repeat 4 146 0 311 257 104 35 chr15 41313768 41313912 -44381842 + HAL1b LINE L1 1187 1340 -8 1194 93 6 0 chr15 41315096 41315258 -44380496 + AluSq SINE Alu 135 297 -16 482 310 75 25 chr15 41316176 41316376 -44379378 + MIR SINE MIR 23 232 -30 397 217 124 134 chr15 41317253 41317470 -44378284 - MER58C DNA MER1_type 0 215 1 755 250 22 0 chr15 41317539 41317719 -44378035 - MIR SINE MIR -32 230 47 2183 82 0 11 chr15 41317860 41318165 -44377589 + AluSc SINE Alu 1 302 0 22 0 0 0 chr15 41318578 41318600 -44377154 + AT_rich Low_complexity Low_complexity 1 22 0 400 238 0 12 chr15 41318815 41318895 -44376859 + AluJ/FLAM SINE Alu 1 79 -223 1591 233 96 39 chr15 41318930 41319450 -44376304 + Charlie1a DNA MER1_type 18 567 -888 842 242 71 51 chr15 41319452 41319852 -44375902 + L1MEc LINE L1 35 459 -5937 262 221 39 48 chr15 41320218 41320322 -44375432 + MER69 DNA AcHobo 2424 2526 0 212 233 71 117 chr15 41320401 41320753 -44375001 - L2 LINE L2 0 3272 2937 180 0 0 0 chr15 41322071 41322091 -44373663 + (GGGAA)n Simple_repeat Simple_repeat 5 24 0 186 133 0 0 chr15 41322403 41322433 -44373321 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 181 140 0 40 chr15 41322467 41322506 -44373248 + (TTCC)n Simple_repeat Simple_repeat 1 39 -9 2138 109 3 3 chr15 41322506 41322808 -44372946 - AluSx SINE Alu -10 302 1 181 140 0 40 chr15 41322808 41322818 -44372936 + (TTCC)n Simple_repeat Simple_repeat 39 48 0 662 179 51 39 chr15 41322883 41323039 -44372715 + MER5B DNA MER1_type 17 174 -4 1712 143 45 3 chr15 41323920 41324207 -44371547 + AluJb SINE Alu 1 299 -13 1160 239 67 78 chr15 41324404 41324855 -44370899 + LTR16A1 LTR ERVL 6 451 -6 551 189 197 0 chr15 41324912 41325039 -44370715 + MER5A DNA MER1_type 31 182 -7 242 348 12 43 chr15 41325305 41325469 -44370285 + MIR3 SINE MIR 47 205 -3 272 137 20 0 chr15 41325639 41325690 -44370064 + GA-rich Low_complexity Low_complexity 3 54 0 997 163 59 35 chr15 41326167 41326370 -44369384 - MER3 DNA MER1_type 0 209 2 2139 106 10 0 chr15 41326955 41327256 -44368498 - AluSx SINE Alu -8 304 1 2159 114 58 19 chr15 41327917 41328278 -44367476 + THE1C LTR MaLR 1 375 0 329 231 93 9 chr15 41328299 41328407 -44367347 - L1ME3A LINE L1 -286 5884 5768 2652 13 0 0 chr15 41328438 41328739 -44367015 + AluYa5 SINE Alu 1 301 -10 801 129 0 0 chr15 41330234 41330350 -44365404 - AluSq/x SINE Alu -196 116 1 393 236 19 9 chr15 41330350 41330466 -44365288 - L1ME3A LINE L1 -380 5782 5664 413 366 51 0 chr15 41330683 41330858 -44364896 + MIR SINE MIR 51 234 -28 437 343 105 0 chr15 41331525 41331697 -44364057 + MIR SINE MIR 21 210 -52 442 256 216 88 chr15 41333246 41333615 -44362139 + L2 LINE L2 2324 2769 -545 1771 125 47 0 chr15 41333615 41333894 -44361860 - AluJb SINE Alu -20 292 1 442 256 216 88 chr15 41333894 41334001 -44361753 + L2 LINE L2 2769 2861 -453 454 230 48 113 chr15 41334062 41334292 -44361462 - L2 LINE L2 -7 3306 3092 234 204 0 0 chr15 41334508 41334557 -44361197 + MLT1J1 LTR MaLR 266 314 -132 2195 155 62 23 chr15 41334648 41335035 -44360719 - MSTA LTR MaLR -26 402 1 505 307 116 17 chr15 41335114 41335521 -44360233 - L2 LINE L2 -842 2472 2026 504 229 153 0 chr15 41335561 41335693 -44360061 - MER5A DNA MER1_type -30 159 4 276 236 146 0 chr15 41336459 41336548 -44359206 + L2 LINE L2 2967 3068 -204 581 283 90 11 chr15 41336704 41336881 -44358873 + MER91A DNA MER1_type 3 193 -3 190 310 70 20 chr15 41336881 41336917 -44358837 - MIR SINE MIR -152 56 16 2404 110 19 19 chr15 41337520 41337884 -44357870 + THE1B LTR MaLR 1 364 0 1856 145 30 0 chr15 41338384 41338687 -44357067 - AluSx SINE Alu 0 312 1 627 197 0 0 chr15 41338767 41338945 -44356809 + (AATAG)n Simple_repeat Simple_repeat 1 178 0 345 257 29 46 chr15 41338957 41339132 -44356622 - MER112 DNA MER1_type -88 172 1 212 281 85 49 chr15 41339146 41339228 -44356526 + L2 LINE L2 2682 2766 -548 * 1269 240 58 54 chr15 41339223 41339837 -44355917 - L2 LINE L2 0 3313 2698 396 305 50 65 chr15 41339977 41340298 -44355456 + L2 LINE L2 2952 3267 -5 223 239 0 0 chr15 41341906 41341952 -44353802 - L2 LINE L2 -16 3297 3252 222 122 54 27 chr15 41342468 41342542 -44353212 + (CAGAGA)n Simple_repeat Simple_repeat 6 81 0 349 252 106 86 chr15 41343125 41343188 -44352566 - MIR SINE MIR -84 178 118 1685 113 55 24 chr15 41343188 41343479 -44352275 + AluJb SINE Alu 1 300 -12 349 252 106 86 chr15 41343479 41343566 -44352188 - MIR SINE MIR -144 118 25 506 278 53 24 chr15 41345008 41345177 -44350577 + MIR3 SINE MIR 21 194 -14 2636 94 11 3 chr15 41345263 41345624 -44350130 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr15 41345655 41345677 -44350077 + (CTGTG)n Simple_repeat Simple_repeat 3 24 0 444 287 176 33 chr15 41345853 41346679 -44349075 + L1ME LINE L1 4861 5818 -303 2161 115 3 0 chr15 41346688 41347000 -44348754 + AluSp SINE Alu 1 313 0 631 269 6 23 chr15 41347065 41347236 -44348518 + MIR SINE MIR 95 262 0 1179 169 151 11 chr15 41347384 41347668 -44348086 - L1MB7 LINE L1 -9 6175 5852 841 270 54 33 chr15 41347762 41348230 -44347524 - LTR33 LTR ERVL -1 520 13 321 280 0 13 chr15 41348569 41348644 -44347110 + L2 LINE L2 3238 3311 -2 7117 34 0 0 chr15 41349275 41350178 -44345576 - L1PA3 LINE L1 -65 6090 5188 214 224 82 0 chr15 41350319 41350368 -44345386 - L2 LINE L2 -15 3257 3205 2447 77 0 0 chr15 41350549 41350860 -44344894 + AluY SINE Alu 1 311 0 1107 116 70 41 chr15 41351106 41351274 -44344480 - L1MA5 LINE L1 -5 6295 6116 1756 130 11 0 chr15 41351274 41351536 -44344218 + AluJb SINE Alu 27 291 -21 1107 116 70 41 chr15 41351536 41351609 -44344145 - L1MA5 LINE L1 -184 6116 6047 236 317 85 5 chr15 41352061 41352165 -44343589 - MIR SINE MIR -65 143 38 1962 221 19 52 chr15 41352249 41352782 -44342972 - L1ME3A LINE L1 -70 6100 5586 347 256 56 44 chr15 41353154 41353244 -44342510 + L2 LINE L2 3168 3258 -14 343 301 122 8 chr15 41354365 41354488 -44341266 - MIR SINE MIR -6 256 120 603 328 20 0 chr15 41354510 41354711 -44341043 + MER115 DNA AcHobo 1 205 -488 226 125 0 0 chr15 41354710 41354742 -44341012 - MLT1J2 LTR MaLR -308 142 111 * 717 221 140 22 chr15 41355284 41355506 -44340248 + MIR SINE MIR 9 256 -6 4178 163 28 57 chr15 41355667 41355950 -44339804 - L1MB7 LINE L1 0 6184 5894 1991 114 24 0 chr15 41355950 41356240 -44339514 + AluSx SINE Alu 1 297 -15 4178 163 28 57 chr15 41356240 41356974 -44338780 - L1MB7 LINE L1 -290 5894 5208 3948 138 65 5 chr15 41357115 41357774 -44337980 + MER4D LTR ERV1 205 903 0 260 167 33 0 chr15 41359244 41359304 -44336450 - MER4-int LTR ERV1 -5425 1173 1112 310 259 187 64 chr15 41359508 41359680 -44336074 + MIR SINE MIR 9 192 -66 451 284 35 0 chr15 41359800 41359916 -44335838 - L2 LINE L2 0 3313 3194 302 353 72 12 chr15 41360082 41360249 -44335505 + MIR SINE MIR 22 198 -64 366 23 0 0 chr15 41360268 41360311 -44335443 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr15 41360310 41360340 -44335414 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 278 260 130 0 chr15 41361233 41361333 -44334421 + MIR SINE MIR 38 150 -112 2101 141 39 30 chr15 41361587 41361948 -44333806 - THE1B LTR MaLR 0 364 1 1237 177 45 0 chr15 41362381 41362624 -44333130 - MER45B DNA AcHobo 0 1040 787 1959 99 0 0 chr15 41362626 41362889 -44332865 - AluSx SINE Alu -10 302 40 3724 142 4 0 chr15 41363353 41363901 -44331853 - MER41D LTR ERV1 -7 550 1 290 271 0 0 chr15 41364659 41364729 -44331025 + L2 LINE L2 3018 3087 -185 428 299 104 79 chr15 41364770 41365011 -44330743 + MIR SINE MIR 15 261 -1 1155 128 95 5 chr15 41365024 41365235 -44330519 - L1MB3 LINE L1 -1 6182 5953 449 267 72 56 chr15 41365268 41365463 -44330291 - L2 LINE L2 -1 3312 3115 1761 199 45 14 chr15 41365465 41365888 -44329866 + LTR37B LTR ERV1 33 468 0 330 306 183 16 chr15 41365892 41366144 -44329610 - L2 LINE L2 -189 3124 2831 192 148 82 131 chr15 41366860 41366921 -44328833 - L2 LINE L2 -20 3293 3236 * 313 327 28 37 chr15 41366920 41367027 -44328727 + L2 LINE L2 3166 3271 -1 992 156 131 10 chr15 41367147 41367346 -44328408 + MIR SINE MIR 9 231 -31 329 264 64 18 chr15 41367358 41367468 -44328286 + L3 LINE CR1 1350 1464 -113 499 261 176 0 chr15 41367491 41367667 -44328087 - MIR SINE MIR 0 262 56 204 205 0 0 chr15 41367895 41367934 -44327820 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 186 167 0 0 chr15 41369928 41369964 -44325790 + CT-rich Low_complexity Low_complexity 2 37 0 792 147 67 13 chr15 41370917 41371067 -44324687 - MER65A LTR ERV1 -159 286 129 784 309 8 4 chr15 41371213 41371449 -44324305 + MIR SINE MIR 8 244 -18 609 270 135 26 chr15 41372534 41372764 -44322990 - MIR SINE MIR 0 262 8 205 80 0 0 chr15 41372933 41372958 -44322796 + (TG)n Simple_repeat Simple_repeat 1 25 0 560 277 51 19 chr15 41373004 41373234 -44322520 + MIR SINE MIR 3 244 -18 200 236 0 28 chr15 41373745 41373817 -44321937 + (CAGA)n Simple_repeat Simple_repeat 4 73 0 518 301 0 0 chr15 41373859 41374035 -44321719 + (CA)n Simple_repeat Simple_repeat 2 177 0 684 262 38 6 chr15 41375617 41375800 -44319954 + MIR SINE MIR 2 190 -72 264 293 45 38 chr15 41376023 41376139 -44319615 + LTR16C LTR ERVL 358 477 -14 279 0 0 0 chr15 41376139 41376170 -44319584 + (TG)n Simple_repeat Simple_repeat 2 32 0 264 293 45 38 chr15 41376170 41376186 -44319568 + LTR16C LTR ERVL 477 491 0 725 194 18 67 chr15 41376191 41376441 -44319313 + L1MEc LINE L1 2157 2418 -3797 1660 215 60 58 chr15 41376441 41376603 -44319151 + MLT1C LTR MaLR 1 161 -306 1997 116 3 3 chr15 41376603 41376896 -44318858 - AluSg SINE Alu -17 293 1 1660 215 60 58 chr15 41376896 41377199 -44318555 + MLT1C LTR MaLR 161 467 0 725 194 18 67 chr15 41377199 41377243 -44318511 + L1MEc LINE L1 2418 2463 -3752 2079 133 146 8 chr15 41377243 41377619 -44318135 + MSTA LTR MaLR 1 428 0 725 194 18 67 chr15 41377619 41377716 -44318038 + L1MEc LINE L1 2463 2533 -3682 225 0 0 0 chr15 41377852 41377877 -44317877 + (A)n Simple_repeat Simple_repeat 1 25 0 355 250 26 20 chr15 41378111 41378263 -44317491 + L1MEc LINE L1 2934 3086 -3129 264 227 45 0 chr15 41378329 41378395 -44317359 + MIR SINE MIR 180 248 -14 329 278 11 44 chr15 41379868 41379958 -44315796 - L2 LINE L2 -3 3269 3183 2164 96 0 3 chr15 41380672 41380965 -44314789 + AluSc SINE Alu 1 292 -17 264 263 53 18 chr15 41381417 41381531 -44314223 + L2 LINE L2 2911 3028 -244 335 307 129 43 chr15 41381550 41381713 -44314041 - L3 LINE CR1 -17 1560 1384 548 275 70 50 chr15 41381752 41381952 -44313802 - MIR SINE MIR -51 211 8 400 172 0 0 chr15 41382266 41382330 -44313424 - MADE1 DNA Mariner -16 64 1 326 209 229 0 chr15 41382376 41382481 -44313273 + MIR3 SINE MIR 8 136 -72 2428 69 0 22 chr15 41382825 41383143 -44312611 + AluY SINE Alu 1 311 0 536 291 102 46 chr15 41383282 41383605 -44312149 - L2 LINE L2 -1 3312 2972 298 277 30 10 chr15 41383619 41383720 -44312034 + MIR SINE MIR 25 127 -81 2183 106 7 0 chr15 41385097 41385398 -44310356 + AluSx SINE Alu 1 303 -9 280 242 11 22 chr15 41385403 41385494 -44310260 + L1MC4 LINE L1 6614 6703 -1339 2644 111 72 0 chr15 41385771 41386186 -44309568 - MER65A LTR ERV1 0 445 1 732 167 0 23 chr15 41386255 41386387 -44309367 + FLAM_A SINE Alu 1 129 -4 310 333 51 14 chr15 41386508 41386646 -44309108 + MIR SINE MIR 69 211 -51 519 230 39 45 chr15 41387480 41387658 -44308096 - MER5B DNA MER1_type 0 178 2 404 299 57 13 chr15 41387679 41387836 -44307918 + MIR SINE MIR 2 165 -97 1141 160 39 74 chr15 41387838 41388094 -44307660 - MER34B LTR ERV1 -302 263 17 2466 190 62 44 chr15 41388107 41388892 -44306862 + L1ME LINE L1 4751 5552 -614 2293 101 0 0 chr15 41389616 41389924 -44305830 - AluSc SINE Alu -1 308 1 634 259 96 59 chr15 41390384 41390623 -44305131 + MIR SINE MIR 10 257 -5 216 200 0 0 chr15 41390655 41390700 -44305054 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 390 275 14 36 chr15 41390734 41390872 -44304882 + HsTC2 DNA Tc2 18 152 -1746 * 684 291 140 4 chr15 41390871 41391136 -44304618 + HsTC2 DNA Tc2 537 837 -1061 1713 124 102 42 chr15 41391270 41391624 -44304130 + THE1C LTR MaLR 1 375 0 238 241 0 0 chr15 41391690 41391744 -44304010 + HsTC2 DNA Tc2 1842 1895 -3 365 239 22 33 chr15 41391945 41392037 -44303717 + L1ME LINE L1 5548 5638 -526 2085 215 58 7 chr15 41392078 41392525 -44303229 - Charlie1a DNA MER1_type -985 470 1 338 221 93 0 chr15 41392531 41392617 -44303137 - L1ME LINE L1 -367 5803 5710 210 290 16 32 chr15 41392655 41392717 -44303037 + MIR SINE MIR 198 258 -4 327 250 39 47 chr15 41393323 41393451 -44302303 + LTR67 LTR ERVL 428 554 -3 33 0 0 0 chr15 41395043 41395076 -44300678 + AT_rich Low_complexity Low_complexity 1 33 0 377 271 77 40 chr15 41395285 41395452 -44300302 + MIR3 SINE MIR 16 182 -51 451 250 115 26 chr15 41396589 41396745 -44299009 + MIR SINE MIR 26 195 -67 778 185 210 0 chr15 41396767 41396967 -44298787 + Charlie1 DNA MER1_type 1 242 -2519 352 183 235 17 chr15 41396950 41397065 -44298689 + Charlie1 DNA MER1_type 2622 2761 0 * 329 160 40 80 chr15 41397612 41397687 -44298067 - LTR33A LTR ERVL -8 515 444 2156 110 0 3 chr15 41398215 41398516 -44297238 - AluSg SINE Alu -10 300 1 781 148 8 0 chr15 41398683 41398811 -44296943 + FLAM_C SINE Alu 1 129 -4 1717 159 10 3 chr15 41399217 41399513 -44296241 + AluJo SINE Alu 1 298 -14 1685 177 17 169 chr15 41399756 41400238 -44295516 - MLT1D LTR MaLR -2 503 126 4133 118 8 12 chr15 41400238 41400885 -44294869 + L1PA14 LINE L1 5518 6161 0 1685 177 17 169 chr15 41400885 41400995 -44294759 - MLT1D LTR MaLR -379 126 1 41 58 0 0 chr15 41401199 41401268 -44294486 + AT_rich Low_complexity Low_complexity 1 69 0 1798 118 4 7 chr15 41401447 41401727 -44294027 - AluSx SINE Alu 0 312 34 1786 150 7 0 chr15 41402255 41402549 -44293205 - AluJo SINE Alu -16 296 1 180 0 0 0 chr15 41402989 41403009 -44292745 + (T)n Simple_repeat Simple_repeat 1 20 0 1801 162 24 87 chr15 41403234 41403648 -44292106 - MLT1B LTR MaLR 0 390 3 953 178 29 0 chr15 41403901 41404075 -44291679 + MIR SINE MIR 41 219 -43 192 261 123 0 chr15 41404095 41404160 -44291594 - L2 LINE L2 0 3313 3241 436 325 38 13 chr15 41404174 41404331 -44291423 - MIR SINE MIR -3 259 99 340 323 0 0 chr15 41404711 41404804 -44290950 - MIR SINE MIR -78 130 38 354 291 67 15 chr15 41405288 41405422 -44290332 - MIR3 SINE MIR -48 160 20 224 194 0 0 chr15 41405445 41405481 -44290273 + L2 LINE L2 3233 3268 -4 2012 112 0 3 chr15 41405554 41405863 -44289891 - AluSq SINE Alu 0 308 1 5121 130 33 11 chr15 41406105 41407098 -44288656 - L1PA15 LINE L1 0 6165 5121 1081 187 10 0 chr15 41407098 41407296 -44288458 - AluJb SINE Alu -29 283 84 3251 199 15 6 chr15 41407296 41407969 -44287785 - L1PA15 LINE L1 -1014 5132 4454 * 4135 243 15 7 chr15 41407952 41409040 -44286714 - L1PA15 LINE L1 -2964 3182 2087 217 250 78 0 chr15 41409064 41409128 -44286626 - L2 LINE L2 -16 3297 3229 192 189 0 0 chr15 41409148 41409185 -44286569 - MIR SINE MIR -24 238 202 12697 68 9 0 chr15 41409710 41412140 -44283614 - L1PA6 LINE L1 0 6154 3703 237 266 76 0 chr15 41412842 41412921 -44282833 + L2 LINE L2 3153 3237 -35 180 226 132 0 chr15 41412928 41412981 -44282773 - MIR SINE MIR -20 242 183 198 311 76 30 chr15 41413596 41413728 -44282026 + MER5B DNA MER1_type 30 167 -11 531 247 60 22 chr15 41413960 41414142 -44281612 + MER5A DNA MER1_type 1 189 0 288 284 68 68 chr15 41415198 41415360 -44280394 + MIR SINE MIR 101 262 0 2102 116 0 3 chr15 41415732 41416034 -44279720 - AluSc SINE Alu -8 301 1 1102 176 19 24 chr15 41416221 41416431 -44279323 - MER6B DNA MER2_type 0 210 2 204 313 30 0 chr15 41416504 41416571 -44279183 + MIR SINE MIR 71 139 -123 314 226 87 26 chr15 41417277 41417392 -44278362 - MIR SINE MIR -121 141 20 883 203 14 59 chr15 41417423 41417645 -44278109 + MER58C DNA MER1_type 4 215 0 1932 147 3 10 chr15 41417916 41418230 -44277524 + AluJb SINE Alu 1 312 0 830 173 100 39 chr15 41418744 41419004 -44276750 + LTR37B LTR ERV1 193 468 0 279 366 35 21 chr15 41419151 41419293 -44276461 + MIR SINE MIR 48 191 -71 504 265 141 64 chr15 41419299 41419446 -44276308 + MIR SINE MIR 1 174 -88 2394 71 0 3 chr15 41419446 41419754 -44276000 + AluY SINE Alu 2 308 -3 504 265 141 64 chr15 41419754 41419840 -44275914 + MIR SINE MIR 174 252 -10 196 263 237 0 chr15 41420005 41420081 -44275673 - MIR SINE MIR -95 113 20 192 340 0 0 chr15 41420729 41420779 -44274975 - L2 LINE L2 -12 3260 3211 23 68 0 0 chr15 41421161 41421205 -44274549 + AT_rich Low_complexity Low_complexity 1 44 0 490 229 29 9 chr15 41421474 41421579 -44274175 - MLT1L LTR MaLR -364 251 145 1947 131 3 0 chr15 41421970 41422261 -44273493 + AluSx SINE Alu 1 292 -20 186 375 0 0 chr15 41422623 41422687 -44273067 - L2 LINE L2 -11 3302 3239 376 250 26 70 chr15 41422890 41423046 -44272708 - MER103 DNA DNA -16 150 2 274 254 51 0 chr15 41424767 41424826 -44270928 + MIR SINE MIR 31 92 -170 560 217 125 38 chr15 41424843 41425027 -44270727 + MIR SINE MIR 58 257 -5 182 238 95 0 chr15 41427360 41427402 -44268352 + L2 LINE L2 3156 3201 -71 198 0 0 0 chr15 41429213 41429235 -44266519 + (GA)n Simple_repeat Simple_repeat 2 23 0 272 344 56 36 chr15 41430944 41431139 -44264615 - MIR SINE MIR -3 259 61 245 292 69 15 chr15 41431256 41431386 -44264368 + MER103 DNA DNA 23 159 -7 648 285 108 20 chr15 41431778 41432169 -44263585 + MLT1J LTR MaLR 32 480 -31 229 289 107 0 chr15 41432858 41432979 -44262775 + L2 LINE L2 3138 3271 -1 230 306 149 8 chr15 41433457 41433578 -44262176 - MIR SINE MIR -94 168 31 416 261 97 36 chr15 41433696 41433862 -44261892 - MIR SINE MIR -50 212 37 473 204 174 141 chr15 41434134 41434502 -44261252 + L1ME4a LINE L1 5712 6091 -30 280 203 36 11 chr15 41437985 41438073 -44257681 - L1MB4 LINE L1 0 6179 6068 569 111 11 0 chr15 41438901 41438991 -44256763 - L1MB4 LINE L1 -8 6172 6082 472 284 60 83 chr15 41439011 41439229 -44256525 - MIR SINE MIR -20 242 30 37 23 0 0 chr15 41439699 41439743 -44256011 + AT_rich Low_complexity Low_complexity 1 44 0 209 250 12 71 chr15 41439796 41439880 -44255874 - MIR3 SINE MIR -12 196 118 3196 78 68 17 chr15 41441206 41441624 -44254130 + L1MA1 LINE L1 5805 6200 -102 2688 100 8 0 chr15 41441624 41441985 -44253769 + THE1B LTR MaLR 1 364 0 3196 78 68 17 chr15 41441985 41442012 -44253742 + L1MA1 LINE L1 6200 6224 -78 213 0 81 0 chr15 41442012 41442049 -44253705 + (TA)n Simple_repeat Simple_repeat 1 40 0 3196 78 68 17 chr15 41442049 41442075 -44253679 + L1MA1 LINE L1 6224 6301 -1 219 69 0 0 chr15 41442095 41442124 -44253630 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 259 179 274 12 chr15 41442134 41442218 -44253536 - MER5A DNA MER1_type -27 162 57 198 289 105 26 chr15 41442289 41442403 -44253351 + L2 LINE L2 3146 3268 -4 182 315 157 0 chr15 41443330 41443419 -44252335 + MIR SINE MIR 157 259 -3 1091 132 42 0 chr15 41445149 41445316 -44250438 - AluSx SINE Alu -7 305 132 579 56 50 45 chr15 41445317 41445496 -44250258 + (TA)n Simple_repeat Simple_repeat 1 180 0 934 105 0 23 chr15 41445496 41445629 -44250125 - AluSx SINE Alu -182 130 1 299 257 133 9 chr15 41448364 41448477 -44247277 - L1ME4a LINE L1 -197 5924 5798 183 313 15 0 chr15 41448691 41448758 -44246996 + MIR SINE MIR 163 230 -32 211 297 126 27 chr15 41448895 41449006 -44246748 - MIR SINE MIR -4 258 137 305 314 74 11 chr15 41449539 41449714 -44246040 - MIR3 SINE MIR -7 201 16 674 188 147 0 chr15 41451243 41451413 -44244341 + MIR SINE MIR 16 210 -52 1260 198 54 0 chr15 41453290 41453568 -44242186 - MER33 DNA MER1_type -31 293 1 254 305 30 50 chr15 41455022 41455222 -44240532 + MLT1L LTR MaLR 368 563 -52 290 113 42 84 chr15 41457322 41457393 -44238361 - MER106B DNA MER1_type -1 1058 991 * 389 216 0 72 chr15 41457388 41457496 -44238258 - MER106B DNA MER1_type -914 145 46 207 0 0 0 chr15 41457496 41457519 -44238235 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 389 216 0 72 chr15 41457519 41457535 -44238219 - MER106B DNA MER1_type -1013 46 30 829 160 77 0 chr15 41457679 41457848 -44237906 + MER5A DNA MER1_type 2 183 -6 201 139 0 0 chr15 41459956 41459999 -44235755 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 2034 139 76 134 chr15 41460377 41460838 -44234916 + Tigger2 DNA MER2_type 1 2718 0 383 198 16 79 chr15 41461351 41461477 -44234277 - L1M4 LINE L1 -1148 4998 4881 289 228 38 13 chr15 41461481 41461560 -44234194 - L1M4 LINE L1 -1336 4810 4730 252 280 138 19 chr15 41462726 41462994 -44232760 + L1ME4a LINE L1 5701 6000 -121 2410 80 0 3 chr15 41463645 41463946 -44231808 + AluSg SINE Alu 1 300 -10 551 179 154 17 chr15 41463964 41464081 -44231673 + FLAM_A SINE Alu 1 133 0 441 0 0 0 chr15 41466415 41466464 -44229290 + (CA)n Simple_repeat Simple_repeat 1 49 0 349 319 56 14 chr15 41466531 41466675 -44229079 - MIR3 SINE MIR -23 185 36 183 80 0 0 chr15 41466720 41466745 -44229009 + (CA)n Simple_repeat Simple_repeat 2 26 0 194 222 0 37 chr15 41467268 41467322 -44228432 + L2 LINE L2 3215 3266 -6 205 224 102 0 chr15 41469319 41469368 -44226386 - L2 LINE L2 0 3272 3219 317 250 0 0 chr15 41469409 41469485 -44226269 - MIR SINE MIR -186 76 1 333 250 11 11 chr15 41471983 41472075 -44223679 - L1ME3 LINE L1 -9 6153 6062 2817 228 13 21 chr15 41472082 41472153 -44223601 - L1ME3 LINE L1 -156 6006 5936 2398 57 13 27 chr15 41472153 41472454 -44223300 - AluY SINE Alu -14 297 1 2817 228 13 21 chr15 41472454 41473053 -44222701 - L1ME3 LINE L1 -226 5936 5341 456 324 170 41 chr15 41475148 41476041 -44219713 + L2 LINE L2 1859 2866 -448 364 266 149 32 chr15 41476606 41476794 -44218960 + L1ME2 LINE L1 141 350 -5855 652 276 120 40 chr15 41477193 41478075 -44217679 + L1ME2 LINE L1 813 1820 -4512 2219 112 0 40 chr15 41478145 41478467 -44217287 + AluSc SINE Alu 1 309 0 386 254 50 86 chr15 41478551 41478931 -44216823 + L1ME2 LINE L1 2060 2392 -3823 * 1904 248 123 38 chr15 41478929 41480530 -44215224 + L1ME2 LINE L1 4512 6402 -1 230 260 130 0 chr15 41480611 41480711 -44215043 - HAL1 LINE L1 -129 2378 2266 305 267 129 52 chr15 41480799 41481009 -44214745 - HAL1 LINE L1 -2191 316 91 326 212 100 98 chr15 41481529 41481713 -44214041 + MIR SINE MIR 4 187 -75 337 241 46 0 chr15 41482425 41482512 -44213242 + MIR SINE MIR 58 148 -60 265 229 16 0 chr15 41482515 41482576 -44213178 - L2 LINE L2 -5 3308 3247 350 288 75 52 chr15 41482626 41482838 -44212916 + MIR SINE MIR 18 234 -28 205 303 79 0 chr15 41483163 41483239 -44212515 - MIR3 SINE MIR -122 86 5 355 204 148 19 chr15 41484233 41484317 -44211437 - MIR SINE MIR -133 129 27 1888 148 4 0 chr15 41484317 41484594 -44211160 - AluSx SINE Alu -12 300 23 355 204 148 19 chr15 41484594 41484617 -44211137 - MIR SINE MIR -235 27 8 914 137 8 0 chr15 41484634 41484765 -44210989 + AluJb SINE Alu 2 133 -179 329 290 21 35 chr15 41487319 41487464 -44208290 + MIR3 SINE MIR 36 178 -30 1766 160 7 20 chr15 41487592 41487924 -44207830 + AluJo SINE Alu 1 312 0 295 281 44 89 chr15 41488578 41488642 -44207112 + MIR SINE MIR 123 179 -83 2127 125 30 0 chr15 41488642 41488937 -44206817 + AluSx SINE Alu 1 304 -8 295 281 44 89 chr15 41488937 41489007 -44206747 + MIR SINE MIR 179 251 -11 246 208 135 21 chr15 41489635 41489731 -44206023 + MIR SINE MIR 98 204 -58 349 221 53 0 chr15 41489736 41489831 -44205923 - MER5B DNA MER1_type -78 100 1 345 233 35 0 chr15 41490046 41490132 -44205622 + L1M4 LINE L1 4031 4119 -2027 190 324 19 38 chr15 41491253 41491358 -44204396 - L3 LINE CR1 -1357 220 118 498 17 0 0 chr15 41491515 41491574 -44204180 + (TG)n Simple_repeat Simple_repeat 1 59 0 1949 121 24 0 chr15 41492644 41492934 -44202820 + AluSq SINE Alu 1 297 -16 1969 129 4 0 chr15 41494694 41495020 -44200734 - AluSx SINE Alu 0 328 2 224 330 126 10 chr15 41495101 41495204 -44200550 - MIR SINE MIR -57 151 37 256 304 143 24 chr15 41495635 41495829 -44199925 + MIR SINE MIR 17 229 -33 350 107 93 27 chr15 41497528 41497603 -44198151 - MER53 DNA DNA 0 189 110 606 289 117 11 chr15 41498163 41498436 -44197318 + L1ME LINE L1 5518 5819 -302 445 229 74 13 chr15 41499278 41499467 -44196287 + MIR SINE MIR 16 216 -46 1531 151 30 50 chr15 41500545 41500844 -44194910 - AluJo SINE Alu -19 293 1 1339 181 0 0 chr15 41502204 41502436 -44193318 - AluJb SINE Alu -80 232 1 7288 109 74 0 chr15 41502569 41503675 -44192079 + L1MA2 LINE L1 1707 2894 -4671 3349 101 25 4 chr15 41503669 41504252 -44191502 + L1MA2 LINE L1 6547 7148 -576 * 291 19 6 6 chr15 41504258 41504300 -44191454 - L1M3 LINE L1 -593 5707 5677 210 37 0 0 chr15 41504315 41504342 -44191412 + (TG)n Simple_repeat Simple_repeat 2 28 0 467 91 52 53 chr15 41504351 41504413 -44191341 - L1ME LINE L1 -393 5773 5713 3205 93 36 30 chr15 41504413 41504933 -44190821 + L1MA2 LINE L1 7196 7722 -1 467 91 52 53 chr15 41504933 41504957 -44190797 - L1ME LINE L1 -453 5713 5690 580 279 176 46 chr15 41506816 41507207 -44188547 + L2 LINE L2 2867 3308 -5 254 261 54 63 chr15 41507407 41507518 -44188236 - MIR SINE MIR 0 262 153 862 66 0 0 chr15 41507734 41507840 -44187914 - AluSq SINE Alu -62 251 146 940 267 23 23 chr15 41510726 41510984 -44184770 + MIR SINE MIR 5 262 0 180 297 188 0 chr15 41512325 41512389 -44183365 - L2 LINE L2 -11 3261 3186 546 303 22 32 chr15 41513193 41513378 -44182376 - MIR SINE MIR 0 262 80 339 297 10 10 chr15 41514458 41514559 -44181195 - MIR SINE MIR -6 256 156 1931 99 3 81 chr15 41515384 41515706 -44180048 - AluSx SINE Alu -15 297 1 575 238 166 7 chr15 41516197 41516348 -44179406 - MIR3 SINE MIR -11 197 23 213 266 76 13 chr15 41517986 41518065 -44177689 + MIR SINE MIR 23 106 -156 367 308 101 19 chr15 41518123 41518282 -44177472 + MIR SINE MIR 78 249 -13 2041 110 23 3 chr15 41518458 41518757 -44176997 + AluSx SINE Alu 1 305 -7 1625 154 36 14 chr15 41519256 41519536 -44176218 + AluJo SINE Alu 1 286 -26 623 75 0 0 chr15 41519562 41519642 -44176112 - MADE1 DNA Mariner 0 80 1 222 313 61 48 chr15 41520692 41520784 -44174970 - L3b LINE CR1 -86 1497 1401 1603 146 68 4 chr15 41520784 41521064 -44174690 - AluSx SINE Alu -14 298 1 222 313 61 48 chr15 41521064 41521118 -44174636 - L3b LINE CR1 -182 1401 1349 243 0 0 0 chr15 41522700 41522727 -44173027 + (CA)n Simple_repeat Simple_repeat 2 28 0 197 248 66 80 chr15 41523333 41523470 -44172284 - L3 LINE CR1 -243 1334 1200 208 93 23 23 chr15 41524601 41524644 -44171110 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 333 313 73 31 chr15 41525500 41525692 -44170062 - L2 LINE L2 -191 3081 2882 230 231 0 0 chr15 41526113 41526165 -44169589 + (ATG)n Simple_repeat Simple_repeat 3 54 0 182 37 37 0 chr15 41527088 41527115 -44168639 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 185 283 33 17 chr15 41527165 41527225 -44168529 - MIR SINE MIR -75 133 73 285 308 140 7 chr15 41528731 41528874 -44166880 + MER5B DNA MER1_type 1 162 -16 281 333 40 10 chr15 41528802 41528901 -44166853 - MER5A DNA MER1_type -85 104 3 * 2249 65 24 0 chr15 41528901 41529192 -44166562 - AluSp SINE Alu -15 298 1 258 158 70 18 chr15 41529230 41529287 -44166467 - MIR SINE MIR -80 182 123 231 250 24 60 chr15 41530386 41530470 -44165284 + MIR SINE MIR 17 97 -111 2159 59 11 0 chr15 41531219 41531492 -44164262 + AluY SINE Alu 27 302 -9 226 318 18 45 chr15 41531766 41531876 -44163878 + L2 LINE L2 2958 3064 -208 266 279 168 28 chr15 41532247 41532426 -44163328 + L3 LINE CR1 1316 1519 -58 250 306 104 23 chr15 41532593 41532750 -44163004 - MIR SINE MIR -36 172 19 2304 84 0 3 chr15 41533242 41533550 -44162204 + AluSq SINE Alu 1 307 -6 892 199 108 101 chr15 41533950 41534246 -44161508 + AluJo SINE Alu 2 299 -3 338 320 90 40 chr15 41534260 41534538 -44161216 + L2 LINE L2 2670 2961 -353 311 290 125 54 chr15 41535920 41536144 -44159610 - MIR SINE MIR -10 252 13 476 314 148 6 chr15 41536705 41536874 -44158880 - MER91A DNA MER1_type -1 195 3 567 282 60 35 chr15 41537160 41537409 -44158345 + MIR SINE MIR 3 254 -8 731 218 233 62 chr15 41537610 41538000 -44157754 + MLT1D LTR MaLR 4 460 -45 319 200 14 14 chr15 41538019 41538089 -44157665 - MER5A DNA MER1_type -105 84 15 2256 97 10 0 chr15 41538567 41538876 -44156878 + AluSp SINE Alu 1 312 -1 332 231 14 91 chr15 41541149 41541214 -44154540 + L1ME3A LINE L1 5988 6038 -132 1987 119 0 56 chr15 41541214 41541534 -44154220 - AluSx SINE Alu -10 302 1 332 231 14 91 chr15 41541534 41541611 -44154143 + L1ME3A LINE L1 6038 6119 -51 181 317 50 0 chr15 41541837 41541897 -44153857 - L2 LINE L2 -17 3296 3234 240 35 0 0 chr15 41542966 41542995 -44152759 + (A)n Simple_repeat Simple_repeat 1 29 0 523 310 13 0 chr15 41543432 41543590 -44152164 + MIR SINE MIR 85 244 -18 824 268 136 9 chr15 41545058 41545397 -44150357 + L1ME3A LINE L1 5789 6170 0 225 0 0 0 chr15 41546750 41546775 -44148979 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1245 187 21 27 chr15 41547388 41547731 -44148023 - L1M4 LINE L1 -1443 4703 4308 1449 149 9 0 chr15 41547757 41547978 -44147776 - AluSg/x SINE Alu -3 309 87 3753 228 53 20 chr15 41547992 41548373 -44147381 - L1M4 LINE L1 -1828 4318 3951 2337 183 50 60 chr15 41548373 41548991 -44146763 - LTR9 LTR ERV1 0 612 1 3753 228 53 20 chr15 41548991 41549687 -44146067 - L1M4 LINE L1 -2195 3951 3206 185 250 100 75 chr15 41549790 41549910 -44145844 - L2 LINE L2 -4 3268 3146 204 253 71 50 chr15 41549979 41550078 -44145676 - MER91C DNA MER1_type -3 137 37 1381 112 0 54 chr15 41550117 41550340 -44145414 + MER4D LTR ERV1 1 211 -692 1702 104 9 4 chr15 41550340 41550571 -44145183 + AluSc SINE Alu 1 232 -77 2072 79 8 8 chr15 41600778 41601044 -44094710 + AluSx SINE Alu 31 296 -16 825 118 7 30 chr15 41601494 41601629 -44094125 + FLAM_C SINE Alu 1 132 -1 2683 151 74 35 chr15 41601690 41602179 -44093575 + LTR12 LTR ERV1 1 508 -206 335 209 47 0 chr15 41602986 41603072 -44092682 + LTR67 LTR ERVL 468 557 0 203 312 0 0 chr15 41603155 41603232 -44092522 + L2 LINE L2 2913 2989 -283 2312 109 0 0 chr15 41603751 41604054 -44091700 - AluSg1 SINE Alu -6 303 1 291 279 150 14 chr15 41604075 41604222 -44091532 + MIR3 SINE MIR 16 182 -26 186 43 0 0 chr15 41604292 41604315 -44091439 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 242 224 0 0 chr15 41604898 41604947 -44090807 + L1MA9 LINE L1 6213 6261 -51 2350 67 0 17 chr15 41605183 41605483 -44090271 - AluY SINE Alu -16 295 1 22 0 0 0 chr15 41606559 41606581 -44089173 + AT_rich Low_complexity Low_complexity 1 22 0 2165 102 0 11 chr15 41606589 41606906 -44088848 + AluSx SINE Alu 1 314 0 2218 105 7 0 chr15 41607483 41607779 -44087975 + AluSx SINE Alu 1 298 -14 225 340 82 34 chr15 41607835 41608188 -44087566 + L2 LINE L2 2475 2844 -470 2251 176 135 2 chr15 41609221 41609664 -44086090 + MLT1D LTR MaLR 4 505 0 239 305 85 0 chr15 41609964 41610046 -44085708 + MIR SINE MIR 23 111 -151 1274 204 184 14 chr15 41610332 41610690 -44085064 - LTR16C LTR ERVL 0 491 73 756 120 17 8 chr15 41610906 41611023 -44084731 - FLAM_C SINE Alu -24 119 2 439 176 185 19 chr15 41611044 41611152 -44084602 - FLAM_A SINE Alu -7 126 1 2238 131 0 0 chr15 41611156 41611469 -44084285 - AluSq SINE Alu 0 313 1 1861 116 34 55 chr15 41611479 41611772 -44083982 - AluSx SINE Alu -25 287 1 2082 123 10 23 chr15 41611774 41612082 -44083672 - AluSx SINE Alu -8 304 1 1670 136 97 0 chr15 41612539 41612796 -44082958 - AluJb SINE Alu -30 282 1 1619 137 35 3 chr15 41613073 41613357 -44082397 + L1MA2 LINE L1 6012 6304 0 252 288 27 0 chr15 41613740 41613813 -44081941 + MLT1J LTR MaLR 99 173 -338 202 132 26 0 chr15 41614394 41614432 -44081322 + A-rich Low_complexity Low_complexity 2 40 0 1884 155 21 3 chr15 41614516 41614807 -44080947 + AluJo SINE Alu 14 309 -3 1446 168 27 12 chr15 41615106 41615362 -44080392 - AluJb SINE Alu -14 298 39 21 0 0 0 chr15 41615889 41615910 -44079844 + AT_rich Low_complexity Low_complexity 1 21 0 278 154 0 58 chr15 41615928 41615980 -44079774 + MER112 DNA MER1_type 2 50 -210 370 0 0 39 chr15 41616000 41616052 -44079702 + (CA)n Simple_repeat Simple_repeat 2 51 0 678 274 130 45 chr15 41616092 41616555 -44079199 + MLT1J LTR MaLR 2 503 -8 454 245 0 27 chr15 41616560 41616707 -44079047 + MER112 DNA MER1_type 111 253 -7 1640 163 32 18 chr15 41617229 41617511 -44078243 - AluJo SINE Alu -26 286 1 21 0 0 0 chr15 41617583 41617604 -44078150 + AT_rich Low_complexity Low_complexity 1 21 0 1806 178 0 10 chr15 41618019 41618312 -44077442 - AluJb SINE Alu -22 290 1 1873 152 3 7 chr15 41619184 41619473 -44076281 - AluJb SINE Alu -17 295 8 298 286 38 0 chr15 41619580 41619685 -44076069 + MIR SINE MIR 134 242 -20 2194 116 10 0 chr15 41619702 41619996 -44075758 + AluSq SINE Alu 1 297 -16 1257 263 104 41 chr15 41620121 41620611 -44075143 - MLT1H LTR MaLR -7 542 22 1798 178 28 0 chr15 41620623 41620929 -44074825 + AluJb SINE Alu 1 312 0 755 232 60 0 chr15 41620943 41621094 -44074660 + FRAM SINE Alu 2 161 -15 2233 186 87 38 chr15 41621518 41622023 -44073731 + MLT1F LTR MaLR 10 539 -3 1547 145 51 30 chr15 41622025 41622321 -44073433 + L1MB7 LINE L1 5864 6165 -19 183 80 0 0 chr15 41622325 41622350 -44073404 + (TG)n Simple_repeat Simple_repeat 2 26 0 377 320 33 4 chr15 41622351 41622621 -44073133 + MLT1F-int LTR MaLR 61 453 -918 192 111 0 0 chr15 41622631 41622667 -44073087 + (T)n Simple_repeat Simple_repeat 1 36 0 1012 112 53 6 chr15 41622667 41622837 -44072917 - MSTB LTR MaLR -38 388 211 454 274 68 0 chr15 41622837 41622983 -44072771 + MLT1F-int LTR MaLR 451 606 -765 225 267 53 13 chr15 41623203 41623278 -44072476 + MLT1F-int LTR MaLR 718 795 -576 2435 97 0 0 chr15 41623512 41623823 -44071931 + AluSx SINE Alu 1 311 -1 839 144 8 0 chr15 41623847 41623979 -44071775 + AluJb SINE Alu 1 133 -179 642 249 82 115 chr15 41624003 41624428 -44071326 + MLT1F-int LTR MaLR 961 1371 0 1622 231 71 32 chr15 41624428 41624866 -44070888 + MLT1F LTR MaLR 1 455 -87 2165 138 0 3 chr15 41624957 41625269 -44070485 + AluSx SINE Alu 1 311 -1 732 163 16 0 chr15 41626615 41626738 -44069016 + FLAM_A SINE Alu 1 125 -8 1526 167 14 37 chr15 41627278 41627572 -44068182 - AluJb SINE Alu -21 291 5 1622 181 7 0 chr15 41627701 41627988 -44067766 + L1PA16 LINE L1 5876 6164 -2 1972 157 0 23 chr15 41628065 41628371 -44067383 - AluJo SINE Alu -13 299 1 211 281 146 0 chr15 41628436 41628525 -44067229 + L2 LINE L2 3197 3298 -15 2062 158 50 17 chr15 41628624 41628732 -44067022 + L1MC4 LINE L1 6993 7096 -946 2141 107 10 3 chr15 41628732 41629022 -44066732 - AluSx SINE Alu -20 292 1 2062 158 50 17 chr15 41629022 41629330 -44066424 + L1MC4 LINE L1 7096 7423 -619 1914 165 76 33 chr15 41629329 41629499 -44066255 + L1MC4 LINE L1 7627 7788 -254 * 2259 108 3 13 chr15 41629499 41629814 -44065940 - AluSx SINE Alu 0 312 1 1914 165 76 33 chr15 41629814 41630038 -44065716 + L1MC4 LINE L1 7788 8038 -4 2065 120 7 0 chr15 41630996 41631311 -44064443 + AluSx SINE Alu 1 317 0 1514 174 14 44 chr15 41631430 41631723 -44064031 - AluJo SINE Alu -27 285 2 2078 126 7 0 chr15 41633596 41633881 -44061873 + AluSx SINE Alu 1 287 -25 1448 141 3 90 chr15 41634054 41634367 -44061387 + AluJo SINE Alu 21 308 0 2207 75 0 0 chr15 41634570 41634837 -44060917 + AluSp SINE Alu 1 267 -46 1153 98 15 5 chr15 41634937 41635104 -44060650 + LTR12 LTR ERV1 142 714 0 570 226 43 43 chr15 41635304 41635468 -44060286 - MLT1B LTR MaLR -15 375 212 343 256 81 38 chr15 41635527 41635687 -44060067 - MLT1B LTR MaLR -198 167 1 666 134 0 0 chr15 41635755 41635852 -44059902 - FLAM_A SINE Alu -11 131 35 259 194 81 0 chr15 41636903 41636965 -44058789 + AluS SINE Alu 1 67 -236 295 119 17 17 chr15 41636965 41637024 -44058730 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 180 179 39 0 chr15 41637021 41637099 -44058655 + (TA)n Simple_repeat Simple_repeat 1 81 0 * 2144 88 0 34 chr15 41637100 41637396 -44058358 - AluY SINE Alu -25 286 1 7686 21 11 0 chr15 41637413 41638749 -44057005 + L1PA3 LINE L1 4802 6152 -3 4067 179 46 42 chr15 41638766 41638979 -44056775 + Charlie1 DNA MER1_type 1778 1989 -772 1569 194 23 16 chr15 41638979 41639288 -44056466 - AluJb SINE Alu -1 311 1 4067 179 46 42 chr15 41639288 41639469 -44056285 + Charlie1 DNA MER1_type 1989 2168 -593 1999 142 0 0 chr15 41639469 41639787 -44055967 + AluJb SINE Alu 1 318 0 4067 179 46 42 chr15 41639787 41639888 -44055866 + Charlie1 DNA MER1_type 2168 2267 -494 2101 130 3 0 chr15 41639888 41640181 -44055573 + AluSq SINE Alu 1 294 -19 4067 179 46 42 chr15 41640181 41640415 -44055339 + Charlie1 DNA MER1_type 2267 2499 -262 11140 27 4 111 chr15 41640415 41641945 -44053809 - SVA Other Other -10 1376 10 4067 179 46 42 chr15 41641945 41642175 -44053579 + Charlie1 DNA MER1_type 2499 2746 -15 8130 55 8 7 chr15 41642882 41643888 -44051866 + LTR13 LTR ERVK 1 1007 0 1205 159 156 33 chr15 41644043 41644345 -44051409 + MER44D DNA MER2_type 1 609 0 22 56 0 0 chr15 41645223 41645259 -44050495 + GC_rich Low_complexity Low_complexity 1 36 0 206 146 0 18 chr15 41645271 41645326 -44050428 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 267 236 0 28 chr15 41645597 41645669 -44050085 + T-rich Low_complexity Low_complexity 4 73 0 258 301 214 18 chr15 41645672 41645901 -44049853 + L2 LINE L2 3015 3288 -25 387 60 0 0 chr15 41646388 41646438 -44049316 + (CA)n Simple_repeat Simple_repeat 2 51 0 3227 136 6 28 chr15 41646980 41647253 -44048501 - LOR1a LTR ERV1 0 497 239 1968 120 54 42 chr15 41647253 41647586 -44048168 + MER1B DNA MER1_type 1 337 0 3227 136 6 28 chr15 41647586 41647820 -44047934 - LOR1a LTR ERV1 -258 239 1 1989 142 39 70 chr15 41648005 41648370 -44047384 - LTR56 LTR ERV1 0 445 95 2028 138 0 0 chr15 41648370 41648666 -44047088 - AluJb SINE Alu -5 307 12 1989 142 39 70 chr15 41648666 41648759 -44046995 - LTR56 LTR ERV1 -350 95 1 2211 96 0 3 chr15 41648942 41649244 -44046510 + AluSc SINE Alu 1 301 -8 382 232 42 0 chr15 41649517 41649685 -44046069 + (TA)n Simple_repeat Simple_repeat 2 176 0 2057 171 59 13 chr15 41649838 41650229 -44045525 - MER87 LTR ERV1 0 541 133 1585 150 49 7 chr15 41650229 41650516 -44045238 + AluJb SINE Alu 1 299 -13 493 290 61 90 chr15 41650577 41650930 -44044824 - L2 LINE L2 -80 3233 2892 2174 112 0 0 chr15 41650930 41651226 -44044528 + AluSx SINE Alu 1 296 -16 493 290 61 90 chr15 41651226 41651282 -44044472 - L2 LINE L2 -421 2892 2836 1388 216 75 57 chr15 41651410 41651773 -44043981 + L1M4 LINE L1 3860 4236 -1910 2118 128 0 3 chr15 41651773 41652078 -44043676 + AluSx SINE Alu 1 304 -8 1388 216 75 57 chr15 41652078 41652224 -44043530 + L1M4 LINE L1 4236 4378 -1768 1992 151 0 0 chr15 41652228 41652527 -44043227 + AluJb SINE Alu 1 299 -13 347 194 45 0 chr15 41653371 41653438 -44042316 + L1MC4 LINE L1 6640 6709 -1333 219 69 0 0 chr15 41654298 41654327 -44041427 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 361 294 103 22 chr15 41655976 41656160 -44039594 + MIR SINE MIR 35 233 -29 1848 153 0 14 chr15 41656185 41656480 -44039274 + AluSx SINE Alu 1 291 -21 1982 96 3 75 chr15 41657384 41657733 -44038021 - AluSx SINE Alu 0 326 1 268 281 156 69 chr15 41658487 41658647 -44037107 - MIR3 SINE MIR -21 187 14 196 260 41 41 chr15 41659738 41659811 -44035943 - MIR SINE MIR -147 115 43 225 0 0 0 chr15 41660964 41660989 -44034765 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2088 105 23 0 chr15 41662257 41662563 -44033191 + AluSp SINE Alu 1 313 0 687 311 37 17 chr15 41662844 41663085 -44032669 + MIR SINE MIR 2 247 -15 1800 123 0 34 chr15 41664385 41664677 -44031077 + AluJb SINE Alu 12 293 -19 259 361 7 13 chr15 41665020 41665117 -44030637 + MIR SINE MIR 32 132 -76 191 182 0 0 chr15 41665118 41665151 -44030603 + MIR SINE MIR 109 141 -67 1303 156 7 78 chr15 41665187 41665494 -44030260 + AluJo SINE Alu 28 312 0 7924 57 1 0 chr15 41665503 41666468 -44029286 - LTR5 LTR ERVK -3 966 1 1562 177 18 0 chr15 41666475 41666752 -44029002 + AluJb SINE Alu 1 282 -30 225 94 0 0 chr15 41666756 41666788 -44028966 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 258 237 23 0 chr15 41667344 41667451 -44028303 - MER5A DNA MER1_type -76 113 4 457 258 84 13 chr15 41668005 41668108 -44027646 + MER96 DNA MER1_type? 4 98 -77 2318 70 3 3 chr15 41668108 41668410 -44027344 - AluY SINE Alu -9 302 1 1765 168 0 19 chr15 41668413 41668729 -44027025 - AluJo SINE Alu -2 310 1 457 258 84 13 chr15 41668729 41668776 -44026978 + MER96 DNA MER1_type? 99 169 -6 228 204 167 0 chr15 41668939 41668993 -44026761 + L2 LINE L2 3210 3272 0 1938 188 0 9 chr15 41669389 41669724 -44026030 + MER58B DNA MER1_type 7 338 -3 1878 138 0 14 chr15 41670008 41670347 -44025407 - AluJb SINE Alu 0 312 1 281 268 170 39 chr15 41671221 41671374 -44024380 - MIR3 SINE MIR 0 208 36 1471 39 0 0 chr15 41671588 41671766 -44023988 + AluY SINE Alu 128 305 -6 2343 97 0 0 chr15 41671885 41672194 -44023560 + AluSx SINE Alu 1 309 -3 1134 194 68 23 chr15 41672452 41672715 -44023039 + ORSL DNA AcHobo 1 275 0 1506 173 42 3 chr15 41673055 41673226 -44022528 - AluJo SINE Alu -7 305 117 264 100 0 0 chr15 41673226 41673266 -44022488 + (TAG)n Simple_repeat Simple_repeat 2 41 0 1506 173 42 3 chr15 41673266 41673377 -44022377 - AluJo SINE Alu -195 117 12 226 330 85 25 chr15 41673398 41673516 -44022238 + L3 LINE CR1 1379 1503 -74 21 57 0 0 chr15 41674064 41674099 -44021655 + AT_rich Low_complexity Low_complexity 1 35 0 255 236 20 31 chr15 41676495 41676602 -44019152 + MIR SINE MIR 2 106 -102 248 221 35 58 chr15 41676647 41676733 -44019021 + L1ME4a LINE L1 5976 6059 -62 2290 71 3 0 chr15 41676733 41677027 -44018727 - AluSx SINE Alu -14 298 4 440 252 120 28 chr15 41677117 41677322 -44018432 - MIR SINE MIR -42 220 11 547 273 58 12 chr15 41677449 41677621 -44018133 - MIR SINE MIR 0 262 83 370 287 52 17 chr15 41678073 41678188 -44017566 + MIR SINE MIR 71 189 -73 427 325 115 56 chr15 41679114 41679379 -44016375 + L1ME1 LINE L1 5414 5717 -449 2017 116 7 0 chr15 41679379 41679671 -44016083 - AluSx SINE Alu -18 294 1 427 325 115 56 chr15 41679671 41679848 -44015906 + L1ME1 LINE L1 5717 5882 -284 482 79 0 0 chr15 41680020 41680083 -44015671 - Alu SINE Alu -246 64 2 254 261 142 35 chr15 41680107 41680368 -44015386 - L1ME4a LINE L1 0 6121 5833 1381 139 0 0 chr15 41680368 41680577 -44015177 - AluJb SINE Alu -19 293 85 25 99 0 0 chr15 41680677 41680758 -44014996 + AT_rich Low_complexity Low_complexity 1 81 0 2013 180 72 48 chr15 41680770 41681185 -44014569 + MLT1D LTR MaLR 10 441 -64 1921 99 0 4 chr15 41681185 41681484 -44014270 + AluSx SINE Alu 21 318 0 2013 180 72 48 chr15 41681484 41681551 -44014203 + MLT1D LTR MaLR 441 505 0 843 274 46 20 chr15 41681618 41681942 -44013812 - L1ME4a LINE L1 -389 5732 5414 598 187 175 12 chr15 41681964 41682130 -44013624 - AluJo SINE Alu -1 311 119 180 226 0 0 chr15 41682492 41682523 -44013231 + MIR SINE MIR 42 72 -136 1159 118 65 5 chr15 41682830 41683016 -44012738 - AluSc SINE Alu -17 292 96 1403 129 4 17 chr15 41683119 41683351 -44012403 + AluJb SINE Alu 73 301 -11 1982 187 46 35 chr15 41683351 41683785 -44011969 + L1MB7 LINE L1 5730 6168 -16 2396 64 0 10 chr15 41683885 41684196 -44011558 - AluY SINE Alu -3 308 1 2004 134 0 0 chr15 41684498 41684790 -44010964 - AluSx SINE Alu -20 292 1 1599 179 101 80 chr15 41684980 41685265 -44010489 + MER119 DNA MER1_type 99 399 -184 1288 157 88 8 chr15 41685265 41685526 -44010228 + AluJo SINE Alu 1 282 -30 1599 179 101 80 chr15 41685526 41685715 -44010039 + MER119 DNA MER1_type 399 583 0 2315 78 3 7 chr15 41685746 41686052 -44009702 - AluSp SINE Alu -8 305 1 311 102 41 0 chr15 41686615 41686664 -44009090 - L1PA7 LINE L1 -2 6152 6102 1154 148 0 30 chr15 41686805 41687007 -44008747 + AluSg/x SINE Alu 112 307 -5 1958 98 4 0 chr15 41688265 41688540 -44007214 + AluY SINE Alu 1 276 -35 219 103 0 0 chr15 41688541 41688580 -44007174 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 936 193 141 36 chr15 41689098 41689375 -44006379 - MER33 DNA MER1_type -25 299 1 28 91 0 0 chr15 41691000 41691077 -44004677 + GC_rich Low_complexity Low_complexity 1 77 0 1516 175 18 14 chr15 41691443 41691723 -44004031 - AluJo SINE Alu -17 285 5 488 103 26 0 chr15 41691825 41691903 -44003851 - Alu SINE Alu -3 307 228 1038 79 0 7 chr15 41692003 41692143 -44003611 + AluSq SINE Alu 135 273 -40 198 0 0 0 chr15 41692143 41692165 -44003589 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2350 45 7 0 chr15 41692313 41692599 -44003155 - L1PA7 LINE L1 0 6154 5867 1876 170 0 3 chr15 41694393 41694693 -44001061 - AluJo SINE Alu -13 299 1 251 154 0 19 chr15 41695590 41695642 -44000112 + CT-rich Low_complexity Low_complexity 3 53 0 2344 92 0 0 chr15 41696361 41696656 -43999098 + AluSg SINE Alu 1 295 -15 1960 117 0 0 chr15 41696840 41697113 -43998641 - AluSx SINE Alu 0 312 40 264 32 0 0 chr15 41697113 41697144 -43998610 - U2 snRNA snRNA -157 31 1 * 386 169 0 0 chr15 41697140 41697199 -43998555 - AluSx SINE Alu -249 59 1 180 0 0 0 chr15 41698003 41698023 -43997731 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2268 82 3 13 chr15 41698024 41698329 -43997425 + AluSx SINE Alu 1 302 -10 2251 91 7 0 chr15 41698653 41698951 -43996803 - AluSg SINE Alu -10 300 1 2323 84 0 0 chr15 41698974 41699259 -43996495 - AluSc SINE Alu -23 286 2 21 0 0 0 chr15 41699747 41699768 -43995986 + AT_rich Low_complexity Low_complexity 1 21 0 913 198 6 0 chr15 41700653 41700810 -43994944 + FAM SINE Alu 1 158 -17 475 278 77 6 chr15 41701259 41701428 -43994326 - MIR3 SINE MIR -11 197 17 2078 144 0 0 chr15 41701786 41702085 -43993669 + AluSx SINE Alu 1 299 -13 419 285 122 20 chr15 41702167 41702413 -43993341 + MLT1K LTR MaLR 103 373 -215 1893 131 116 44 chr15 41702968 41703195 -43992559 + MER1A DNA MER1_type 1 263 -2439 2227 113 7 0 chr15 41703195 41703496 -43992258 + AluSx SINE Alu 1 303 -9 1893 131 116 44 chr15 41703496 41703612 -43992142 + MER1A DNA MER1_type 263 369 -160 387 321 57 25 chr15 41704420 41704579 -43991175 - L2 LINE L2 0 3272 3109 2383 100 0 0 chr15 41704840 41705141 -43990613 + AluSq SINE Alu 1 301 -12 274 267 27 13 chr15 41705402 41705477 -43990277 + MLT1K LTR MaLR 340 415 -173 2615 44 0 0 chr15 41706491 41706788 -43988966 - AluY SINE Alu -14 297 1 216 0 0 0 chr15 41707066 41707090 -43988664 + (CAG)n Simple_repeat Simple_repeat 2 25 0 732 184 0 0 chr15 41707411 41707536 -43988218 - Charlie1 DNA MER1_type 0 2761 2637 241 287 23 0 chr15 41707622 41707709 -43988045 + MLT1K LTR MaLR 500 588 0 292 304 130 6 chr15 41707865 41708026 -43987728 - MIR SINE MIR -46 216 36 255 282 8 68 chr15 41709024 41709290 -43986464 + G-rich Low_complexity Low_complexity 1 249 0 984 119 8 0 chr15 41712047 41712181 -43983573 + AluJo SINE Alu 1 135 -177 1679 158 11 25 chr15 41712188 41712472 -43983282 + AluJo SINE Alu 10 289 -23 2306 77 3 3 chr15 41712765 41713078 -43982676 + AluY SINE Alu 1 313 0 209 331 66 26 chr15 41713364 41713515 -43982239 - MIR3 SINE MIR -6 202 46 864 214 104 5 chr15 41713964 41714156 -43981598 + MER58C DNA MER1_type 1 211 -4 279 250 18 0 chr15 41715432 41715488 -43980266 - Charlie8 DNA MER1_type -2354 63 7 234 273 82 27 chr15 41715662 41715772 -43979982 + MIR SINE MIR 66 181 -81 29 28 0 0 chr15 41716386 41716422 -43979332 + AT_rich Low_complexity Low_complexity 1 36 0 1832 184 10 0 chr15 41716567 41716905 -43978849 - AluSx SINE Alu 0 341 1 555 233 18 37 chr15 41716982 41717145 -43978609 + MER117 DNA MER1_type 30 189 -8 21 0 0 0 chr15 41718818 41718839 -43976915 + AT_rich Low_complexity Low_complexity 1 21 0 1014 130 13 7 chr15 41718962 41719116 -43976638 - AluJb SINE Alu -157 155 1 743 168 0 8 chr15 41719741 41719872 -43975882 + FLAM_C SINE Alu 1 130 -3 209 270 48 0 chr15 41719959 41720022 -43975732 - MIR SINE MIR -115 147 82 2474 36 0 78 chr15 41721206 41721537 -43974217 + AluY SINE Alu 1 305 -6 242 348 0 35 chr15 41722346 41722461 -43973293 + MIR3 SINE MIR 77 187 -21 635 236 160 27 chr15 41722840 41723065 -43972689 - MIR SINE MIR 0 262 8 1862 138 6 66 chr15 41724111 41724251 -43971503 + AluJo SINE Alu 1 148 -164 2190 95 3 11 chr15 41724251 41724575 -43971179 + AluSx SINE Alu 1 322 0 1862 138 6 66 chr15 41724575 41724752 -43971002 + AluJo SINE Alu 148 301 -11 197 261 234 9 chr15 41725177 41725288 -43970466 + L2 LINE L2 3136 3271 -1 266 309 123 37 chr15 41725822 41726368 -43969386 + L2 LINE L2 1570 2162 -1152 333 366 9 0 chr15 41726430 41726542 -43969212 + L2 LINE L2 3134 3246 -26 2362 81 3 23 chr15 41726789 41727099 -43968655 - AluSc SINE Alu -5 304 1 1917 112 11 4 chr15 41728129 41728397 -43967357 - AluSx SINE Alu -13 299 30 2440 88 0 3 chr15 41728502 41728808 -43966946 - AluSx SINE Alu -7 305 1 317 203 16 0 chr15 41729092 41729156 -43966598 + LTR33 LTR ERVL 450 514 -7 328 231 264 0 chr15 41729397 41729518 -43966236 + MER5A DNA MER1_type 37 189 0 466 180 22 0 chr15 41729789 41729878 -43965876 + MER5B DNA MER1_type 78 168 -10 2013 96 75 4 chr15 41730408 41730688 -43965066 - AluSx SINE Alu -12 300 1 1652 181 13 19 chr15 41730985 41731294 -43964460 + AluJo SINE Alu 4 310 -2 221 222 121 40 chr15 41731594 41731693 -43964061 + MIR SINE MIR 104 210 -52 457 219 10 0 chr15 41731930 41732026 -43963728 + MER5B DNA MER1_type 82 178 0 2036 97 0 74 chr15 41732574 41732885 -43962869 + AluSx SINE Alu 11 298 -14 560 215 0 0 chr15 41733060 41733167 -43962587 + MER63 DNA MER1_type 681 787 -273 871 132 0 22 chr15 41733499 41733635 -43962119 + FLAM_C SINE Alu 1 133 0 737 302 155 36 chr15 41733656 41733802 -43961952 - L3 LINE CR1 -157 1420 1293 1823 177 3 3 chr15 41733802 41734102 -43961652 + AluJo SINE Alu 1 300 -12 737 302 155 36 chr15 41734102 41734485 -43961269 - L3 LINE CR1 -284 1293 828 2237 88 0 7 chr15 41734502 41734825 -43960929 - AluSc SINE Alu 0 309 5 452 127 13 0 chr15 41734829 41734908 -43960846 + L1MB8 LINE L1 6099 6178 0 2095 94 65 0 chr15 41735035 41735311 -43960443 + AluSg SINE Alu 2 295 -15 210 143 0 0 chr15 41736924 41736959 -43958795 + (ATGGTG)n Simple_repeat Simple_repeat 4 38 0 904 203 14 14 chr15 41736967 41737174 -43958580 - MIR SINE MIR -19 243 37 2105 113 138 43 chr15 41737691 41737861 -43957893 - MSTA LTR MaLR 0 428 275 2262 109 0 0 chr15 41737861 41738165 -43957589 - AluY SINE Alu -7 304 1 2105 113 138 43 chr15 41738165 41738385 -43957369 - MSTA LTR MaLR -153 275 1 215 190 76 38 chr15 41739017 41739096 -43956658 - MIR SINE MIR -91 171 90 378 173 0 0 chr15 41739328 41739403 -43956351 + (CA)n Simple_repeat Simple_repeat 2 76 0 1898 257 91 44 chr15 41739593 41739980 -43955774 - MER115 DNA AcHobo -17 676 309 2106 117 45 0 chr15 41739980 41740270 -43955484 + AluSx SINE Alu 1 303 -9 2177 129 3 3 chr15 41740270 41740580 -43955174 + AluSx SINE Alu 1 310 -2 1898 257 91 44 chr15 41740580 41740830 -43954924 - MER115 DNA AcHobo -383 310 8 2147 85 58 10 chr15 41741656 41741950 -43953804 - AluSx SINE Alu -4 308 1 2272 100 7 3 chr15 41742564 41742863 -43952891 + AluSx SINE Alu 1 300 -12 202 284 45 0 chr15 41743200 41743267 -43952487 + L3 LINE CR1 1490 1559 -18 198 272 97 88 chr15 41743513 41743627 -43952127 - L2 LINE L2 0 3272 3158 1074 135 70 11 chr15 41744220 41744405 -43951349 + AluJb SINE Alu 11 206 -106 2363 87 3 0 chr15 41744605 41744893 -43950861 + AluSg SINE Alu 10 298 -12 462 289 108 5 chr15 41746193 41746387 -43949367 + MIR SINE MIR 49 262 0 261 0 0 0 chr15 41747020 41747049 -43948705 + (T)n Simple_repeat Simple_repeat 1 29 0 1778 124 11 4 chr15 41747074 41747341 -43948413 + AluSc SINE Alu 41 309 0 329 189 40 0 chr15 41747396 41747470 -43948284 - MER112 DNA MER1_type -6 254 178 426 184 48 48 chr15 41747562 41747687 -43948067 - MER112 DNA MER1_type -135 125 1 191 231 0 0 chr15 41748752 41748791 -43946963 - L2 LINE L2 -10 3303 3265 726 309 101 0 chr15 41750039 41750327 -43945427 + LTR33A LTR ERVL 69 385 -138 425 234 102 0 chr15 41750327 41750464 -43945290 + LTR33A LTR ERVL 329 479 -44 1825 313 159 34 chr15 41750464 41750532 -43945222 + MER7C DNA MER2_type 1 59 -2969 204 40 0 0 chr15 41750532 41750557 -43945197 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2242 107 0 10 chr15 41750557 41750856 -43944898 - AluSx SINE Alu -16 296 1 1825 313 159 34 chr15 41750856 41751320 -43944434 + MER7C DNA MER2_type 58 601 -1 236 128 64 21 chr15 41751395 41751442 -43944312 + LTR50 LTR ERVL 747 795 0 214 237 118 13 chr15 41751572 41751648 -43944106 + MIR SINE MIR 34 117 -145 24 0 0 0 chr15 41751793 41751817 -43943937 + AT_rich Low_complexity Low_complexity 1 24 0 409 318 54 7 chr15 41752549 41752697 -43943057 + MIR3 SINE MIR 20 174 -34 219 125 0 0 chr15 41752697 41752729 -43943025 + L2 LINE L2 3265 3296 -17 250 246 15 15 chr15 41753363 41753428 -43942326 + L2 LINE L2 3234 3298 -15 2039 148 3 0 chr15 41753474 41753785 -43941969 - AluJb SINE Alu 0 312 1 4122 84 0 4 chr15 41754341 41754897 -43940857 - MER41A LTR ERV1 0 554 1 1676 169 16 44 chr15 41755515 41755961 -43939793 - AluJo SINE Alu 0 437 1 2654 108 9 41 chr15 41756340 41756783 -43938971 + MER1A DNA MER1_type 101 529 0 2106 91 0 18 chr15 41756873 41757169 -43938585 - AluSc SINE Alu 0 301 11 21 0 0 0 chr15 41757451 41757472 -43938282 + AT_rich Low_complexity Low_complexity 1 21 0 2206 106 0 0 chr15 41757787 41758089 -43937665 - AluSq SINE Alu -11 302 1 1288 135 57 0 chr15 41758196 41758352 -43937402 - AluJo SINE Alu -25 287 117 207 0 0 0 chr15 41758352 41758375 -43937379 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1288 135 57 0 chr15 41758375 41758410 -43937344 - AluJo SINE Alu -195 117 85 31 44 0 0 chr15 41760391 41760436 -43935318 + AT_rich Low_complexity Low_complexity 1 45 0 1622 170 13 29 chr15 41760540 41760851 -43934903 - AluJo SINE Alu -6 306 1 230 122 20 20 chr15 41762865 41762914 -43932840 + (TA)n Simple_repeat Simple_repeat 2 50 0 238 279 139 6 chr15 41762979 41763137 -43932617 - L1ME LINE L1 -260 5904 5726 455 298 18 0 chr15 41763267 41763381 -43932373 + MIR3 SINE MIR 86 201 -7 6619 118 26 4 chr15 41763842 41765375 -43930379 - L1MA3 LINE L1 -10 6295 4732 23 0 0 0 chr15 41765441 41765464 -43930290 + AT_rich Low_complexity Low_complexity 1 23 0 386 239 174 55 chr15 41766004 41766427 -43929327 + MLT1K LTR MaLR 129 583 -5 2130 98 30 14 chr15 41766630 41766927 -43928827 - AluSx SINE Alu -10 302 1 193 323 105 53 chr15 41767615 41767748 -43928006 - MIR3 SINE MIR -46 162 23 1872 139 7 24 chr15 41768280 41768575 -43927179 + AluSx SINE Alu 1 290 -22 1112 150 26 22 chr15 41768666 41768893 -43926861 - L1MB2 LINE L1 0 6171 5944 185 352 0 0 chr15 41768926 41768980 -43926774 - L2 LINE L2 -12 3301 3248 480 214 0 87 chr15 41769671 41769797 -43925957 + MER5B DNA MER1_type 16 130 -48 1301 216 58 17 chr15 41769817 41770214 -43925540 - MSTD LTR MaLR -2 394 1 234 356 40 0 chr15 41771087 41771188 -43924566 - MIR3 SINE MIR -19 189 85 471 281 81 16 chr15 41771214 41771399 -43924355 + MIR3 SINE MIR 3 199 -9 259 256 93 0 chr15 41771508 41771594 -43924160 - MER21B LTR ERV1 -52 811 718 3429 194 9 43 chr15 41771632 41771749 -43924005 - MER21B LTR ERV1 -132 731 612 2125 114 5 30 chr15 41771749 41771950 -43923804 - MER46B DNA MER2_type -2495 236 172 2267 89 3 3 chr15 41771950 41772243 -43923511 - AluSp SINE Alu -20 293 1 2125 114 5 30 chr15 41772243 41772408 -43923346 - MER46B DNA MER2_type -2559 172 4 3429 194 9 43 chr15 41772408 41773042 -43922712 - MER21B LTR ERV1 -251 612 5 1632 171 43 9 chr15 41773070 41773392 -43922362 - MLT1A1 LTR MaLR -17 348 16 202 336 156 8 chr15 41773809 41773937 -43921817 - MIR3 SINE MIR -21 187 41 2246 115 0 0 chr15 41774302 41774607 -43921147 + AluSg SINE Alu 1 305 -5 2672 24 0 0 chr15 41775925 41776222 -43919532 + AluYb8 SINE Alu 1 297 -21 186 357 31 41 chr15 41777207 41777305 -43918449 + L3b LINE CR1 1242 1338 -245 364 191 138 11 chr15 41777733 41777827 -43917927 + L2 LINE L2 3208 3313 0 541 336 60 20 chr15 41778320 41778570 -43917184 - MIR SINE MIR 0 262 3 354 134 0 0 chr15 41778741 41778808 -43916946 - L1MB4 LINE L1 -1 6179 6113 2403 88 3 0 chr15 41778819 41779116 -43916638 - AluSp SINE Alu -13 300 3 21 0 0 0 chr15 41779123 41779144 -43916610 + AT_rich Low_complexity Low_complexity 1 21 0 341 255 205 19 chr15 41779259 41779420 -43916334 - L1ME4a LINE L1 -3 6118 5928 210 377 67 46 chr15 41779447 41779606 -43916148 - L2 LINE L2 -492 2822 2668 827 174 0 0 chr15 41779606 41779738 -43916016 + FLAM_C SINE Alu 2 133 0 210 377 67 46 chr15 41779738 41779907 -43915847 - L2 LINE L2 -646 2668 2487 584 281 117 39 chr15 41780301 41780582 -43915172 + L2 LINE L2 3010 3312 -1 234 296 130 17 chr15 41780549 41780664 -43915090 - L2 LINE L2 -982 2332 2205 * 2392 75 0 0 chr15 41780701 41780993 -43914761 + AluY SINE Alu 1 292 -19 325 287 124 8 chr15 41781851 41782023 -43913731 - MIR SINE MIR -11 197 6 24 32 0 0 chr15 41782726 41782757 -43912997 + AT_rich Low_complexity Low_complexity 1 31 0 2035 140 3 25 chr15 41783323 41783637 -43912117 - AluSx SINE Alu -5 307 1 1829 113 0 4 chr15 41783933 41784180 -43911574 - AluSq SINE Alu -67 246 1 2076 127 49 22 chr15 41784263 41784812 -43910942 - MER51A LTR ERV1 -2 632 1 2038 104 45 0 chr15 41784894 41785183 -43910571 - AluY SINE Alu -9 302 1 2383 86 0 0 chr15 41785618 41785910 -43909844 - AluSc SINE Alu -17 292 1 872 74 33 0 chr15 41786349 41786471 -43909283 + L1PA7 LINE L1 6029 6154 0 2106 144 64 1 chr15 41786861 41787342 -43908412 + L1PB4 LINE L1 5304 5858 -298 197 309 82 10 chr15 41787918 41788015 -43907739 - L2 LINE L2 0 3272 3169 753 172 0 0 chr15 41788262 41788378 -43907376 + FLAM_A SINE Alu 1 116 -17 288 77 0 0 chr15 41788390 41788429 -43907325 + (TA)n Simple_repeat Simple_repeat 1 39 0 1659 191 0 31 chr15 41793686 41794006 -43901748 + AluSx SINE Alu 1 310 -2 2275 117 3 0 chr15 41794260 41794569 -43901185 - AluSx SINE Alu -2 310 1 1911 130 18 14 chr15 41794577 41794862 -43900892 - AluJb SINE Alu -24 288 3 358 324 110 53 chr15 41794919 41795632 -43900122 + L2 LINE L2 1273 2044 -1270 2105 140 100 42 chr15 41795731 41796189 -43899565 + MLT1D LTR MaLR 21 505 0 318 344 103 36 chr15 41796191 41796905 -43898849 + L2 LINE L2 2232 3043 -229 2309 87 10 0 chr15 41796905 41797203 -43898551 + AluSq SINE Alu 1 301 -12 318 344 103 36 chr15 41797203 41797431 -43898323 + L2 LINE L2 3043 3254 -18 1870 136 3 7 chr15 41797439 41797725 -43898029 + AluJb SINE Alu 2 286 -26 1635 135 8 16 chr15 41797845 41797995 -43897759 - AluJb SINE Alu -27 285 136 2126 100 6 60 chr15 41797995 41798180 -43897574 - AluSx SINE Alu -10 302 140 2029 122 7 3 chr15 41798180 41798484 -43897270 - AluSx SINE Alu -7 305 1 2126 100 6 60 chr15 41798484 41798617 -43897137 - AluSx SINE Alu -172 140 1 1635 135 8 16 chr15 41798617 41798710 -43897044 - AluJb SINE Alu -176 136 44 2195 124 68 25 chr15 41798761 41799084 -43896670 + MER1B DNA MER1_type 1 337 0 193 0 29 59 chr15 41799292 41799326 -43896428 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 270 172 55 chr15 41799542 41799705 -43896049 + MIR3 SINE MIR 16 197 -11 2186 119 0 0 chr15 41799969 41800255 -43895499 - AluSx SINE Alu -26 286 1 2230 104 0 10 chr15 41800705 41801028 -43894726 - AluSx SINE Alu 0 320 1 313 294 43 11 chr15 41801617 41801709 -43894045 - L2 LINE L2 -52 3261 3167 258 110 0 68 chr15 41802404 41802477 -43893277 + (CCCCCG)n Simple_repeat Simple_repeat 4 71 0 500 188 48 118 chr15 41803100 41803286 -43892468 + MER5B DNA MER1_type 2 174 -4 664 244 60 15 chr15 41804503 41804704 -43891050 - L2 LINE L2 -1 3312 3103 2354 95 0 3 chr15 41804773 41805077 -43890677 - AluSq SINE Alu -10 303 1 260 269 30 0 chr15 41805722 41805789 -43889965 - L3 LINE CR1 -82 1495 1427 1627 195 44 0 chr15 41805847 41806144 -43889610 + AluJb SINE Alu 2 311 -1 269 264 136 84 chr15 41806213 41806486 -43889268 - L3 LINE CR1 -354 1223 937 210 37 0 0 chr15 41806514 41806541 -43889213 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chr15 41806740 41806774 -43888980 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr15 41808135 41808171 -43887583 + AT_rich Low_complexity Low_complexity 1 36 0 1695 158 7 11 chr15 41808228 41808507 -43887247 - AluJo SINE Alu -32 280 3 2474 226 39 7 chr15 41808514 41809125 -43886629 - L1M4 LINE L1 -823 5323 4693 1424 152 54 54 chr15 41809125 41809198 -43886556 - Tigger3(Golem) DNA MER2_type -955 276 204 1941 153 7 0 chr15 41809198 41809493 -43886261 - AluJb SINE Alu -15 297 1 1424 152 54 54 chr15 41809493 41809695 -43886059 - Tigger3(Golem) DNA MER2_type -1026 205 1 336 156 111 0 chr15 41809697 41809832 -43885922 - L1PA15 LINE L1 -1 6164 5941 25 51 0 0 chr15 41810393 41810432 -43885322 + AT_rich Low_complexity Low_complexity 1 39 0 712 142 117 17 chr15 41810615 41810735 -43885019 - FLAM_C SINE Alu 0 133 2 23 68 0 0 chr15 41814242 41814286 -43881468 + AT_rich Low_complexity Low_complexity 1 44 0 1911 161 42 39 chr15 41814462 41814698 -43881056 + MER46B DNA MER2_type 1 115 -2616 1927 166 3 3 chr15 41814698 41815000 -43880754 + AluJb SINE Alu 1 302 -10 1911 161 42 39 chr15 41815000 41815123 -43880631 + MER46B DNA MER2_type 115 236 0 368 383 13 7 chr15 41815677 41815831 -43879923 + L2 LINE L2 3117 3271 -1 196 272 8 96 chr15 41815828 41815953 -43879801 - L2 LINE L2 -214 3058 2945 * 234 181 57 114 chr15 41816028 41816133 -43879621 + MIR SINE MIR 118 216 -46 425 348 45 11 chr15 41816449 41816627 -43879127 + L3 LINE CR1 1052 1235 -342 244 303 145 7 chr15 41816685 41816830 -43878924 + MLT1H LTR MaLR 97 261 -288 1718 171 3 23 chr15 41817358 41817668 -43878086 - AluJo SINE Alu -8 304 1 191 59 0 29 chr15 41818121 41818155 -43877599 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2016 105 0 11 chr15 41818159 41818444 -43877310 - AluY SINE Alu -29 282 1 1932 127 0 0 chr15 41818464 41818739 -43877015 - AluSg SINE Alu -1 309 35 1606 174 8 8 chr15 41818746 41819011 -43876743 - AluJb SINE Alu -16 296 32 413 252 31 16 chr15 41819916 41820043 -43875711 + L2 LINE L2 2386 2514 -800 180 0 0 0 chr15 41820377 41820397 -43875357 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 270 263 63 120 chr15 41820435 41820529 -43875225 + L3 LINE CR1 1251 1332 -245 1187 193 24 0 chr15 41820529 41820742 -43875012 - MER20 DNA MER1_type 0 219 2 270 263 63 120 chr15 41820742 41820822 -43874932 + L3 LINE CR1 1332 1415 -162 1985 87 56 11 chr15 41821632 41821919 -43873835 - AluSc SINE Alu -9 300 1 1767 170 0 20 chr15 41822220 41822526 -43873228 + AluJb SINE Alu 1 300 -12 200 338 14 0 chr15 41823008 41823082 -43872672 + L2 LINE L2 3227 3301 -12 1905 161 6 3 chr15 41823176 41823487 -43872267 - AluJb SINE Alu 0 312 1 544 209 157 15 chr15 41823682 41823816 -43871938 - MIR SINE MIR -79 183 31 2380 59 0 7 chr15 41824365 41824681 -43871073 - AluY SINE Alu 0 311 1 460 256 236 16 chr15 41825748 41825998 -43869756 - L1ME3A LINE L1 -219 5951 5647 804 205 18 0 chr15 41825999 41826165 -43869589 - MER5A DNA MER1_type -3 186 18 1884 99 33 93 chr15 41826556 41826888 -43868866 - AluSx SINE Alu 0 312 1 207 205 0 0 chr15 41827918 41827957 -43867797 + MIR SINE MIR 217 255 -7 2039 259 81 25 chr15 41828084 41828488 -43867266 - L1ME3A LINE L1 -4 6166 5786 1696 174 14 3 chr15 41828488 41828770 -43866984 - AluJb SINE Alu -27 285 1 2039 259 81 25 chr15 41828770 41828833 -43866921 - L1ME3A LINE L1 -384 5786 5728 437 0 19 0 chr15 41828833 41828886 -43866868 + (CA)n Simple_repeat Simple_repeat 2 55 0 2039 259 81 25 chr15 41828886 41829150 -43866604 - L1ME3A LINE L1 -442 5728 5393 479 266 71 0 chr15 41829152 41829336 -43866418 + L1ME3A LINE L1 5903 6099 -71 654 225 139 37 chr15 41829339 41829663 -43866091 - L1ME3A LINE L1 -747 5399 5043 218 306 112 35 chr15 41829929 41830099 -43865655 + L2 LINE L2 3042 3224 -89 556 179 160 19 chr15 41830929 41831085 -43864669 - MER5B DNA MER1_type 0 178 1 662 261 220 42 chr15 41835354 41835905 -43859849 - L2 LINE L2 -1096 2218 1570 2270 109 6 6 chr15 41835909 41836221 -43859533 - AluSx SINE Alu 0 312 1 1013 253 102 5 chr15 41836224 41836627 -43859127 + L1ME4a LINE L1 2995 3436 -2710 2037 106 0 4 chr15 41836627 41836900 -43858854 + AluSq SINE Alu 41 312 -1 2212 232 43 29 chr15 41836912 41837495 -43858259 - L1MCb LINE L1 -5043 1002 412 1277 239 14 0 chr15 41837499 41837779 -43857975 - L1MCb LINE L1 -5761 284 1 351 330 86 46 chr15 41838164 41838512 -43857242 + L1ME4a LINE L1 4803 5164 -982 332 314 103 36 chr15 41838514 41838708 -43857046 + L1ME4a LINE L1 5193 5399 -747 349 255 103 53 chr15 41838746 41838945 -43856809 + L1ME4a LINE L1 5453 5660 -461 3779 179 42 44 chr15 41838996 41839763 -43855991 - MER21B LTR ERV1 -98 765 1 250 327 149 0 chr15 41839933 41840040 -43855714 - L2 LINE L2 0 3313 3191 261 235 59 123 chr15 41840069 41840273 -43855481 + L1ME4a LINE L1 5929 6119 -2 1658 196 46 68 chr15 41840379 41840582 -43855172 - MER4A LTR ERV1 0 695 489 2338 81 13 7 chr15 41840582 41840891 -43854863 + AluY SINE Alu 1 311 0 1658 196 46 68 chr15 41840891 41841403 -43854351 - MER4A LTR ERV1 -206 489 1 331 217 58 0 chr15 41841528 41841597 -43854157 + L2 LINE L2 2995 3067 -205 1726 195 35 57 chr15 41841640 41841861 -43853893 - L1ME2 LINE L1 -3 6161 5952 2246 116 13 0 chr15 41841861 41842164 -43853590 - AluSx SINE Alu -5 307 1 1726 195 35 57 chr15 41842164 41842367 -43853387 - L1ME2 LINE L1 -212 5952 5746 1238 144 31 35 chr15 41842423 41842652 -43853102 - MER21A LTR ERV1 0 931 704 2143 114 16 0 chr15 41842656 41842962 -43852792 - AluSx SINE Alu -1 311 1 495 198 89 32 chr15 41843826 41843840 -43851914 - L1MA10 LINE L1 0 6334 6321 424 245 100 85 chr15 41843840 41844106 -43851648 - L1ME1 LINE L1 -5 6161 5914 6291 103 109 43 chr15 41844107 41845257 -43850497 + Tigger3b DNA MER2_type 1 1226 -5 240 35 0 0 chr15 41845275 41845304 -43850450 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 81 0 0 chr15 41845330 41845367 -43850387 + (TG)n Simple_repeat Simple_repeat 2 38 0 1218 199 78 31 chr15 41847100 41847457 -43848297 + Charlie5 DNA MER1_type 2240 2613 0 215 321 45 36 chr15 41848156 41848268 -43847486 + L2 LINE L2 2946 3058 -214 210 105 0 0 chr15 41849530 41849568 -43846186 + (CA)n Simple_repeat Simple_repeat 1 38 0 895 83 0 0 chr15 41849668 41849777 -43845977 - AluSg/x SINE Alu -11 298 190 571 241 37 73 chr15 41852354 41852545 -43843209 - MER5A DNA MER1_type -5 184 1 2347 102 0 0 chr15 41853243 41853538 -43842216 - AluSg1 SINE Alu -14 295 1 2231 117 0 0 chr15 41853593 41853905 -43841849 - AluSx SINE Alu 0 312 1 236 260 208 0 chr15 41857736 41857832 -43837922 - L2 LINE L2 -3 3269 3154 181 304 125 9 chr15 41857948 41858060 -43837694 - L2 LINE L2 -193 3079 2955 2247 113 10 3 chr15 41859148 41859458 -43836296 - AluSx SINE Alu 0 312 1 894 192 47 23 chr15 41859955 41860169 -43835585 + MER20 DNA MER1_type 1 219 0 1060 168 0 17 chr15 41860353 41860532 -43835222 - FRAM SINE Alu 0 176 1 1276 61 0 0 chr15 41861448 41861596 -43834158 - AluSg/x SINE Alu -5 307 160 356 324 9 0 chr15 41861600 41861705 -43834049 - MIR SINE MIR -65 143 38 2215 90 43 7 chr15 41862347 41862646 -43833108 - AluSg SINE Alu 0 310 1 986 91 0 0 chr15 41862646 41862767 -43832987 - AluSq/x SINE Alu -177 135 15 267 306 112 8 chr15 41864625 41864759 -43830995 + MIR3 SINE MIR 24 171 -37 187 318 61 0 chr15 41864777 41864843 -43830911 + L2 LINE L2 3148 3217 -55 2227 110 3 29 chr15 41866164 41866510 -43829244 + MER1B DNA MER1_type 1 337 0 3191 111 16 23 chr15 41867166 41867679 -43828075 - MER4B LTR ERV1 -101 509 1 21 36 0 0 chr15 41867861 41867889 -43827865 + AT_rich Low_complexity Low_complexity 1 28 0 2404 81 10 0 chr15 41868184 41868481 -43827273 - AluSp SINE Alu -9 304 5 2190 128 142 92 chr15 41868711 41869343 -43826411 + MER4A LTR ERV1 1 664 0 213 306 144 38 chr15 41870046 41870206 -43825548 + L3 LINE CR1 981 1157 -420 326 333 70 16 chr15 41870965 41871094 -43824660 - MIR SINE MIR -103 159 24 328 294 66 22 chr15 41871918 41872054 -43823700 - L2 LINE L2 -1 3312 3171 520 68 27 0 chr15 41872117 41872190 -43823564 + MADE1 DNA Mariner 6 80 0 210 280 224 9 chr15 41874659 41874766 -43820988 + L2 LINE L2 3138 3267 -5 811 226 100 34 chr15 41875658 41876007 -43819747 - L1MC5 LINE L1 -50 7911 7540 2290 119 0 3 chr15 41876949 41877261 -43818493 - AluSx SINE Alu -1 311 1 731 302 80 42 chr15 41877902 41878303 -43817451 - L2 LINE L2 0 3313 2898 264 326 134 17 chr15 41878429 41878601 -43817153 - L3 LINE CR1 -189 1388 1197 854 143 0 0 chr15 41878625 41878751 -43817003 - FLAM_C SINE Alu -7 126 1 546 108 0 0 chr15 41879394 41879477 -43816277 + FLAM SINE Alu 49 131 -12 801 210 16 0 chr15 41880278 41880464 -43815290 + MER5A DNA MER1_type 1 189 0 578 140 10 0 chr15 41880625 41880725 -43815029 + L1M4 LINE L1 5720 5820 -354 982 166 0 16 chr15 41880907 41881094 -43814660 - MER5A DNA MER1_type -1 188 5 395 264 84 13 chr15 41881112 41881267 -43814487 - MER5B DNA MER1_type -6 172 7 23 0 0 0 chr15 41881372 41881395 -43814359 + AT_rich Low_complexity Low_complexity 1 23 0 1780 187 54 45 chr15 41881396 41881864 -43813890 - L1MB5 LINE L1 -9 6165 5685 231 146 0 0 chr15 41883226 41883267 -43812487 + (CA)n Simple_repeat Simple_repeat 2 42 0 316 283 134 5 chr15 41883270 41883457 -43812297 + L1MD3 LINE L1 7572 7782 -213 1778 248 41 20 chr15 41883743 41884251 -43811503 - LTR40a LTR ERVL 0 519 1 1025 177 31 0 chr15 41885100 41885292 -43810462 + MER20 DNA MER1_type 1 198 -21 243 200 0 0 chr15 41885677 41885722 -43810032 - MIR SINE MIR -6 256 212 1123 202 28 0 chr15 41885725 41885938 -43809816 - MER58A DNA MER1_type 0 224 6 497 337 29 0 chr15 41885940 41886112 -43809642 - MIR SINE MIR -43 219 43 204 328 115 23 chr15 41886415 41886589 -43809165 - L3b LINE CR1 -182 1401 1212 483 232 96 45 chr15 41886599 41886776 -43808978 + MIR SINE MIR 8 193 -69 199 231 19 0 chr15 41887104 41887156 -43808598 - L2 LINE L2 -2 3270 3218 2284 68 39 0 chr15 41887620 41887901 -43807853 + AluSp SINE Alu 1 292 -21 661 139 44 73 chr15 41887924 41888061 -43807693 + FLAM_C SINE Alu 1 133 0 862 188 12 6 chr15 41888664 41888824 -43806930 - AluJb SINE Alu -14 298 138 2165 119 7 7 chr15 41889570 41889873 -43805881 + AluSx SINE Alu 1 303 -9 497 278 108 71 chr15 41890011 41890335 -43805419 + L2 LINE L2 2934 3269 -3 2274 129 0 0 chr15 41890626 41890935 -43804819 - AluSx SINE Alu -3 309 1 349 235 0 12 chr15 41891881 41891962 -43803792 - HsTC2 DNA Tc2 -1815 83 4 180 282 0 0 chr15 41893048 41893087 -43802667 - MIR SINE MIR -64 198 160 541 273 32 64 chr15 41893108 41893194 -43802560 - MIR SINE MIR -24 238 151 969 124 68 23 chr15 41893194 41893371 -43802383 - MER5A DNA MER1_type -4 185 1 541 273 32 64 chr15 41893371 41893504 -43802250 - MIR SINE MIR -111 151 26 1843 137 65 3 chr15 41893894 41894186 -43801568 + AluJb SINE Alu 2 311 -1 2543 90 0 0 chr15 41894205 41894517 -43801237 + AluSx SINE Alu 1 312 0 187 102 20 20 chr15 41895554 41895603 -43800151 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 398 249 158 11 chr15 41895665 41895842 -43799912 - L1ME3A LINE L1 0 6170 5968 2145 110 24 0 chr15 41896795 41897086 -43798668 + AluSx SINE Alu 1 298 -14 428 284 97 23 chr15 41897283 41897459 -43798295 - MER5A DNA MER1_type 0 189 1 219 280 160 30 chr15 41897460 41897560 -43798194 - MIR3 SINE MIR -49 159 47 289 302 164 13 chr15 41897894 41898126 -43797628 + L2 LINE L2 2825 3091 -181 2358 104 7 0 chr15 41899508 41899816 -43795938 - AluSq SINE Alu -3 310 1 298 292 14 0 chr15 41899988 41900060 -43795694 + MIR3 SINE MIR 85 157 -51 831 223 26 22 chr15 41900063 41900332 -43795422 + HAL1 LINE L1 2234 2503 -4 2123 144 20 0 chr15 41900979 41901285 -43794469 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 41901288 41901377 -43794377 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 383 247 113 33 chr15 41902048 41902198 -43793556 - MLT1D LTR MaLR -337 168 7 413 297 118 20 chr15 41902531 41902726 -43793028 + L1MC/D LINE L1 5556 5772 -392 297 224 90 0 chr15 41902741 41902808 -43792946 - LTR16C LTR ERVL -7 484 412 938 279 101 20 chr15 41902868 41903273 -43792481 + LTR16A LTR ERVL 1 438 -12 1251 184 56 39 chr15 41903445 41903679 -43792075 - AluJo SINE Alu -69 243 6 26 30 0 0 chr15 41903683 41903716 -43792038 + AT_rich Low_complexity Low_complexity 1 33 0 1647 161 104 7 chr15 41903964 41904244 -43791510 + AluJo SINE Alu 1 307 -5 363 185 19 9 chr15 41905067 41905175 -43790579 + CT-rich Low_complexity Low_complexity 2 110 0 489 227 57 63 chr15 41905419 41905623 -43790131 + MIR SINE MIR 2 213 -49 379 180 6 13 chr15 41906575 41906649 -43789105 - MIR3 SINE MIR -30 178 103 237 304 0 14 chr15 41907286 41907355 -43788399 - L2 LINE L2 0 3313 3246 225 227 45 30 chr15 41907674 41907740 -43788014 + L2 LINE L2 2872 2938 -375 1389 180 4 8 chr15 41907744 41907989 -43787765 - AluJo SINE Alu -64 248 5 2608 135 52 2 chr15 41908040 41908448 -43787306 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr15 41908537 41908560 -43787194 + AT_rich Low_complexity Low_complexity 1 23 0 858 145 0 0 chr15 41908562 41908686 -43787068 - FLAM_C SINE Alu -7 126 3 197 273 236 0 chr15 41908686 41908741 -43787013 + L2 LINE L2 3184 3251 -21 612 243 64 50 chr15 41909012 41909260 -43786494 + MIR SINE MIR 5 262 0 358 338 23 35 chr15 41909267 41909441 -43786313 - MIR SINE MIR -85 123 4 21 0 0 0 chr15 41909472 41909493 -43786261 + AT_rich Low_complexity Low_complexity 1 21 0 265 262 198 32 chr15 41910461 41910587 -43785167 - MIR SINE MIR -107 155 9 230 138 0 103 chr15 41910927 41910973 -43784781 - L1M3 LINE L1 -732 5439 5399 1621 111 5 0 chr15 41910973 41911181 -43784573 - AluJb SINE Alu -17 295 87 230 138 0 103 chr15 41911181 41911192 -43784562 - L1M3 LINE L1 -772 5399 5388 488 239 116 136 chr15 41911377 41911833 -43783921 + L2 LINE L2 2824 3270 -2 229 282 90 0 chr15 41911918 41911996 -43783758 - MIR SINE MIR -3 259 175 222 216 20 0 chr15 41912178 41912229 -43783525 + L2 LINE L2 3262 3313 0 2362 102 0 0 chr15 41912396 41912699 -43783055 - AluSg SINE Alu -7 303 1 459 192 144 16 chr15 41912719 41912844 -43782910 - MLT1J1 LTR MaLR -305 141 1 311 209 58 58 chr15 41912920 41913006 -43782748 - MIR3 SINE MIR -28 180 95 816 184 101 32 chr15 41913029 41913246 -43782508 + AluJo SINE Alu 3 234 -78 1889 170 20 0 chr15 41913793 41914099 -43781655 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 41914102 41914191 -43781563 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 2480 91 3 0 chr15 41914627 41914936 -43780818 + AluSp SINE Alu 1 310 -3 289 302 164 13 chr15 41916318 41916550 -43779204 - L2 LINE L2 -181 3091 2825 230 270 160 30 chr15 41916886 41916986 -43778768 + MIR3 SINE MIR 47 159 -49 428 275 90 28 chr15 41916987 41917165 -43778589 + MER5A DNA MER1_type 1 189 0 2138 110 24 0 chr15 41917362 41917653 -43778101 - AluSx SINE Alu -14 298 1 261 282 111 0 chr15 41918656 41918773 -43776981 + L1ME3A LINE L1 6032 6161 -9 551 101 0 11 chr15 41919512 41919601 -43776153 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2123 144 20 0 chr15 41919604 41919910 -43775844 - AluJb SINE Alu 0 312 1 831 223 26 22 chr15 41920557 41920826 -43774928 - HAL1 LINE L1 -4 2503 2234 298 292 14 0 chr15 41920829 41920901 -43774853 - MIR3 SINE MIR -51 157 85 2324 96 0 0 chr15 41921073 41921365 -43774389 + AluSx SINE Alu 1 292 -20 219 69 0 0 chr15 41922329 41922358 -43773396 + (TG)n Simple_repeat Simple_repeat 1 29 0 271 155 10 58 chr15 41923225 41923328 -43772426 + GA-rich Low_complexity Low_complexity 2 99 0 383 119 15 0 chr15 41923979 41924046 -43771708 + (TG)n Simple_repeat Simple_repeat 1 68 0 770 111 17 0 chr15 41925129 41925246 -43770508 - LTR8 LTR ERV1 0 691 573 2150 132 10 0 chr15 41925247 41925551 -43770203 - AluSx SINE Alu -5 307 1 885 106 0 0 chr15 41925551 41925664 -43770090 - AluSq/x SINE Alu -177 135 23 2096 192 20 88 chr15 41925664 41925697 -43770057 - LTR8 LTR ERV1 -128 563 529 2020 94 49 4 chr15 41925697 41925986 -43769768 - AluSg SINE Alu 0 301 1 2096 192 20 88 chr15 41925986 41926554 -43769200 - LTR8 LTR ERV1 -162 529 1 205 276 13 66 chr15 41926934 41926973 -43768781 - L2 LINE L2 -19 3253 3218 3083 131 198 7 chr15 41926973 41927563 -43768191 + MER39 LTR ERV1 5 707 0 205 276 13 66 chr15 41927563 41927599 -43768155 - L2 LINE L2 -54 3218 3182 191 384 18 18 chr15 41928348 41928460 -43767294 - MIR SINE MIR -73 135 24 278 266 145 44 chr15 41929080 41929264 -43766490 + MIR3 SINE MIR 3 196 -58 189 0 0 0 chr15 41929281 41929302 -43766452 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 235 200 33 33 chr15 41929302 41929362 -43766392 - L2 LINE L2 -32 3281 3222 404 213 189 8 chr15 41929743 41929870 -43765884 - MIR SINE MIR -11 251 102 2216 120 13 0 chr15 41930011 41930319 -43765435 - AluSx SINE Alu 0 312 1 207 113 57 19 chr15 41930618 41930671 -43765083 + GA-rich Low_complexity Low_complexity 2 56 0 289 296 101 35 chr15 41930905 41931074 -43764680 + MIR SINE MIR 33 212 -50 196 309 62 0 chr15 41931238 41931319 -43764435 + MIR SINE MIR 70 155 -107 364 259 47 133 chr15 41931766 41931909 -43763845 + MIR SINE MIR 9 122 -140 2359 121 0 0 chr15 41931909 41932222 -43763532 + AluSq SINE Alu 1 313 0 364 259 47 133 chr15 41932222 41932333 -43763421 + MIR SINE MIR 122 241 -21 2084 118 0 45 chr15 41934044 41934358 -43761396 - AluSx SINE Alu -12 300 1 936 218 6 0 chr15 41935187 41935361 -43760393 - FRAM SINE Alu -1 175 1 2187 122 30 0 chr15 41935967 41936270 -43759484 + AluSx SINE Alu 1 312 0 568 153 10 10 chr15 41936450 41936548 -43759206 + FLAM_A SINE Alu 35 132 -10 697 206 101 63 chr15 41936585 41936638 -43759116 - L1MC5 LINE L1 -169 7792 7743 1114 154 46 0 chr15 41936638 41936813 -43758941 - MER5A DNA MER1_type -2 187 5 697 206 101 63 chr15 41936813 41937045 -43758709 - L1MC5 LINE L1 -218 7743 7496 2271 97 0 26 chr15 41937126 41937434 -43758320 + AluSx SINE Alu 1 300 -12 522 252 77 13 chr15 41937587 41937742 -43758012 + MIR SINE MIR 79 243 -19 241 275 59 128 chr15 41937905 41938225 -43757529 + L2 LINE L2 2397 2694 -620 206 250 33 0 chr15 41938229 41938289 -43757465 + CT-rich Low_complexity Low_complexity 2 63 0 2771 142 22 73 chr15 41938481 41939066 -43756688 - LTR10A LTR ERV1 -54 555 1 327 291 126 20 chr15 41939106 41939257 -43756497 - L1ME LINE L1 -387 5783 5617 1952 192 108 78 chr15 41939289 41939931 -43755823 + MER67B LTR ERV1 1 661 0 929 302 78 43 chr15 41939967 41940088 -43755666 - L1ME LINE L1 -650 5516 5401 2048 73 0 4 chr15 41940088 41940358 -43755396 + AluSc SINE Alu 35 303 0 929 302 78 43 chr15 41940358 41941594 -43754160 - L1ME LINE L1 -765 5401 4112 396 333 156 21 chr15 41942112 41942490 -43753264 + L2 LINE L2 2832 3260 -12 2369 108 0 6 chr15 41942668 41942982 -43752772 + AluSx SINE Alu 1 312 0 2378 104 0 0 chr15 41943090 41943397 -43752357 + AluSx SINE Alu 1 307 -5 689 216 127 117 chr15 41943935 41944362 -43751392 + MLT1H LTR MaLR 119 549 0 2260 120 39 25 chr15 41944794 41945153 -43750601 + THE1B LTR MaLR 1 364 0 272 236 38 132 chr15 41945173 41945279 -43750475 - MER91C DNA MER1_type -16 124 29 404 98 0 0 chr15 41945324 41945375 -43750379 + Alu SINE Alu 1 51 -262 228 35 0 0 chr15 41945418 41945447 -43750307 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1485 166 0 39 chr15 41945472 41945731 -43750023 - AluJo SINE Alu -63 249 1 864 209 53 0 chr15 41946394 41946581 -43749173 - MER3 DNA MER1_type -8 201 5 2461 89 0 0 chr15 41947480 41947782 -43747972 + AluSg SINE Alu 1 302 -8 1860 163 23 3 chr15 41948596 41948902 -43746852 - AluJb SINE Alu 0 312 1 1205 190 80 80 chr15 41949490 41949777 -43745977 - MLT1A1 LTR MaLR -2 363 74 2226 96 0 3 chr15 41949777 41950080 -43745674 - AluSx SINE Alu -10 302 1 1205 190 80 80 chr15 41950080 41950155 -43745599 - MLT1A1 LTR MaLR -290 75 1 266 231 31 15 chr15 41950593 41950658 -43745096 + MIR SINE MIR 79 144 -118 231 376 54 13 chr15 41951203 41951352 -43744402 - L2 LINE L2 -1 3271 3117 275 291 136 39 chr15 41951489 41951878 -43743876 - L1ME4a LINE L1 -137 5984 5558 3231 152 18 2 chr15 41951886 41952386 -43743368 - MLT2B1 LTR ERVL 0 520 13 331 291 130 48 chr15 41952402 41952611 -43743143 - L1ME4a LINE L1 -780 5553 5321 1854 163 0 0 chr15 41952828 41953135 -43742619 - AluSx SINE Alu 0 312 6 1964 88 11 0 chr15 41953166 41953428 -43742326 - AluSg SINE Alu -45 265 1 884 117 44 0 chr15 41954391 41954528 -43741226 + FLAM_C SINE Alu 1 143 0 293 241 0 0 chr15 41955713 41955767 -43739987 - Zaphod DNA AcHobo 0 4031 3978 * 816 319 80 24 chr15 41955766 41956139 -43739615 - MER115 DNA AcHobo -240 453 60 2391 82 0 0 chr15 41957142 41957447 -43738307 + AluSx SINE Alu 1 305 -7 296 331 76 58 chr15 41957965 41958137 -43737617 - MER91A DNA MER1_type 0 196 22 2548 141 52 5 chr15 41958163 41958567 -43737187 + MSTA LTR MaLR 6 428 0 1624 157 16 36 chr15 41958642 41958947 -43736807 + AluJb SINE Alu 14 312 0 979 224 19 14 chr15 41959008 41959222 -43736532 + MER58A DNA MER1_type 10 224 0 1988 141 0 10 chr15 41959310 41959623 -43736131 + AluJb SINE Alu 1 310 -2 423 182 24 43 chr15 41959626 41959718 -43736036 + GA-rich Low_complexity Low_complexity 1 93 -442 2140 110 10 0 chr15 41959718 41960027 -43735727 + AluSq SINE Alu 1 312 -1 423 182 24 43 chr15 41960027 41960172 -43735582 + GA-rich Low_complexity Low_complexity 93 535 0 951 98 0 0 chr15 41960178 41960310 -43735444 + AluY SINE Alu 1 132 -179 201 74 0 0 chr15 41960310 41960337 -43735417 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1155 45 0 19 chr15 41960339 41960495 -43735259 + AluY SINE Alu 127 279 -32 314 281 58 70 chr15 41960966 41961137 -43734617 + MER5B DNA MER1_type 10 178 0 228 337 22 22 chr15 41961514 41961606 -43734148 + MIR SINE MIR 121 212 -50 295 287 21 133 chr15 41961890 41962078 -43733676 + MER5A DNA MER1_type 10 176 -13 404 180 234 18 chr15 41962396 41962507 -43733247 + L2 LINE L2 3170 3304 -9 1998 177 64 33 chr15 41963149 41963602 -43732152 + MLT1C LTR MaLR 1 467 0 272 236 47 9 chr15 41963787 41963893 -43731861 + (TA)n Simple_repeat Simple_repeat 2 111 0 518 235 49 109 chr15 41964542 41964663 -43731091 - MIR SINE MIR -59 203 95 1737 159 7 0 chr15 41964663 41964952 -43730802 + AluSx SINE Alu 1 291 -21 518 235 49 109 chr15 41964952 41965013 -43730741 - MIR SINE MIR -167 95 32 2059 92 17 14 chr15 41965359 41965651 -43730103 + AluSq SINE Alu 1 293 -20 312 104 45 0 chr15 41965891 41965958 -43729796 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 5255 234 84 52 chr15 41966447 41966804 -43728950 - L1MEc LINE L1 -3552 2663 2319 1897 134 0 61 chr15 41966804 41967132 -43728622 - AluSx SINE Alu -4 308 1 5255 234 84 52 chr15 41967132 41967532 -43728222 - L1MEc LINE L1 -3896 2319 1933 1994 132 13 0 chr15 41967532 41967835 -43727919 + AluJb SINE Alu 1 307 -5 5255 234 84 52 chr15 41967835 41967945 -43727809 - L1MEc LINE L1 -4282 1933 1828 2109 104 3 0 chr15 41967945 41968242 -43727512 - AluSg SINE Alu -11 299 2 5255 234 84 52 chr15 41968242 41969527 -43726227 - L1MEc LINE L1 -4387 1828 466 1556 179 184 41 chr15 41969535 41969971 -43725783 - MLT1D LTR MaLR -1 504 7 458 294 59 12 chr15 41970304 41970499 -43725255 + L1ME3A LINE L1 5556 5772 -392 342 209 90 0 chr15 41970514 41970581 -43725173 - LTR16C LTR ERVL -7 484 412 1290 270 95 12 chr15 41970641 41971052 -43724702 + LTR16A LTR ERVL 1 445 -5 1413 220 57 24 chr15 41971058 41971394 -43724360 - LTR16C LTR ERVL -144 347 1 226 254 90 0 chr15 41971394 41971461 -43724293 + L1ME3A LINE L1 5786 5858 -312 257 154 0 0 chr15 41971461 41971500 -43724254 + 5S rRNA rRNA 1 39 -82 242 295 0 0 chr15 41971500 41971605 -43724149 + L1ME3A LINE L1 5844 5948 -222 1734 143 7 4 chr15 41971869 41972141 -43723613 + AluJo SINE Alu 1 273 -39 25 65 0 0 chr15 41972143 41972189 -43723565 + AT_rich Low_complexity Low_complexity 1 46 0 5463 100 9 0 chr15 41972370 41973122 -43722632 - L1PA13 LINE L1 0 6163 5405 339 308 104 46 chr15 41973176 41973378 -43722376 - L1ME4a LINE L1 -76 6045 5856 1943 149 0 0 chr15 41973378 41973673 -43722081 - AluJb SINE Alu -17 295 1 339 308 104 46 chr15 41973673 41973882 -43721872 - L1ME4a LINE L1 -265 5856 5610 615 363 0 1 chr15 41974105 41974325 -43721429 + MIR SINE MIR 34 251 -11 277 300 50 20 chr15 41974850 41974950 -43720804 - MIR3 SINE MIR -103 105 3 200 313 0 0 chr15 41975324 41975372 -43720382 - MIR3 SINE MIR -47 161 114 194 271 0 0 chr15 41975921 41975969 -43719785 + L2 LINE L2 2190 2237 -1077 585 241 54 54 chr15 41976292 41976533 -43719221 + L2 LINE L2 2338 2578 -736 1723 181 3 49 chr15 41976549 41976908 -43718846 - Charlie4a DNA MER1_type -1516 445 104 1828 132 0 14 chr15 41976908 41977188 -43718566 + AluSx SINE Alu 1 276 -36 1723 181 3 49 chr15 41977188 41977214 -43718540 - Charlie4a DNA MER1_type -1857 104 78 470 140 10 0 chr15 41977219 41977319 -43718435 + (CA)n Simple_repeat Simple_repeat 2 102 0 518 288 44 48 chr15 41977392 41977609 -43718145 + L2 LINE L2 2597 2813 -500 3195 170 86 25 chr15 41977609 41978293 -43717461 + LTR8A LTR ERV1 2 727 0 518 288 44 48 chr15 41978293 41978520 -43717234 + L2 LINE L2 2813 3115 -198 4299 142 18 10 chr15 41978561 41979266 -43716488 + MER50 LTR ERV1 1 711 -23 1891 266 112 8 chr15 41980321 41980911 -43714843 - MER115 DNA AcHobo -28 665 15 295 157 114 14 chr15 41981049 41981119 -43714635 + MARNA DNA Mariner 311 387 -199 2025 117 0 23 chr15 41981399 41981699 -43714055 + AluSx SINE Alu 1 293 -19 2054 94 10 7 chr15 41981703 41981991 -43713763 + L1PA10 LINE L1 5872 6160 -8 316 286 14 86 chr15 41982386 41982591 -43713163 - MIR3 SINE MIR -64 198 6 237 313 58 8 chr15 41983734 41983836 -43711918 + MIR SINE MIR 80 144 -64 648 282 101 0 chr15 41983890 41984099 -43711655 - MIR SINE MIR -10 252 23 291 247 11 21 chr15 41984319 41984412 -43711342 - MIR SINE MIR -124 138 47 265 259 35 0 chr15 41985749 41985807 -43709947 + L2 LINE L2 3222 3281 -32 193 156 0 0 chr15 41985908 41985940 -43709814 + MIR SINE MIR 118 149 -113 1867 125 23 16 chr15 41986148 41986453 -43709301 + AluSx SINE Alu 1 307 -5 2320 90 0 3 chr15 41986455 41986767 -43708987 + AluY SINE Alu 1 311 0 331 287 33 16 chr15 41987002 41987124 -43708630 + MARNA DNA Mariner 322 445 -141 269 239 30 0 chr15 41987125 41987192 -43708562 + MER5B DNA MER1_type 7 75 -103 455 355 41 6 chr15 41987241 41987413 -43708341 - MIR SINE MIR 0 262 85 663 193 51 40 chr15 41987798 41987974 -43707780 - MER5B DNA MER1_type 0 178 1 543 268 20 20 chr15 41987989 41988142 -43707612 - MARNA DNA Mariner -160 426 274 356 277 27 68 chr15 41988668 41988764 -43706990 + MIR3 SINE MIR 65 154 -54 1510 177 0 14 chr15 41988764 41989046 -43706708 + AluJo SINE Alu 14 291 -21 356 277 27 68 chr15 41989046 41989097 -43706657 + MIR3 SINE MIR 154 206 -2 442 316 153 10 chr15 41989550 41989759 -43705995 + MIR SINE MIR 1 239 -23 790 156 32 26 chr15 41990650 41990804 -43704950 - MER5B DNA MER1_type -23 155 1 432 227 30 49 chr15 41990904 41991056 -43704698 - MIR SINE MIR -62 146 28 1185 125 0 6 chr15 41991223 41991399 -43704355 - L1PA10 LINE L1 -3 6165 5991 323 301 117 0 chr15 41991403 41991506 -43704248 - MIR SINE MIR -58 150 36 370 242 50 8 chr15 41991656 41991776 -43703978 + L1MC4 LINE L1 7917 8041 -1 2195 87 6 16 chr15 41991812 41992123 -43703631 + AluSc SINE Alu 1 308 -1 2778 117 52 27 chr15 41993357 41993449 -43702305 - LTR32 LTR ERVL 0 471 383 2427 65 0 0 chr15 41993449 41993755 -43701999 - AluY SINE Alu -5 306 1 2778 117 52 27 chr15 41993755 41994108 -43701646 - LTR32 LTR ERVL -88 383 15 260 247 27 14 chr15 41994293 41994331 -43701423 + CT-rich Low_complexity Low_complexity 1 37 -37 2380 69 7 0 chr15 41994331 41994636 -43701118 - AluY SINE Alu -4 307 1 260 247 27 14 chr15 41994636 41994670 -43701084 + CT-rich Low_complexity Low_complexity 37 74 0 388 162 141 119 chr15 41994859 41995044 -43700710 - MER53 DNA DNA 0 189 1 1519 185 26 0 chr15 41995286 41995589 -43700165 - AluJb SINE Alu 0 312 2 402 330 0 0 chr15 41995733 41995839 -43699915 - MIR SINE MIR -117 145 40 348 191 371 0 chr15 41996074 41996179 -43699575 + MER5B DNA MER1_type 1 144 -34 844 156 8 0 chr15 41996587 41996715 -43699039 - FLAM_C SINE Alu -4 129 1 412 293 34 54 chr15 41996859 41997064 -43698690 + MIR SINE MIR 60 260 -2 2224 98 3 0 chr15 41997154 41997450 -43698304 - AluSp SINE Alu -16 297 1 572 201 173 0 chr15 41997612 41997751 -43698003 + MER5A DNA MER1_type 21 183 -6 481 254 34 0 chr15 41997927 41998045 -43697709 - MIR SINE MIR -92 170 49 3128 146 28 38 chr15 41998237 41998282 -43697472 - L1MB7 LINE L1 -12 6172 6128 2198 112 0 6 chr15 41998282 41998594 -43697160 - AluSx SINE Alu -2 310 1 3128 146 28 38 chr15 41998594 41999156 -43696598 - L1MB7 LINE L1 -56 6128 5571 191 345 73 0 chr15 41999284 41999339 -43696415 - L2 LINE L2 -2135 1179 1121 511 239 75 22 chr15 41999375 41999509 -43696245 + MIR3 SINE MIR 25 165 -43 324 220 140 30 chr15 41999877 41999977 -43695777 - L1ME4a LINE L1 -4 6117 6007 281 96 110 14 chr15 41999977 42000050 -43695704 + L1MA8 LINE L1 6212 6291 0 410 251 211 35 chr15 42000088 42000259 -43695495 - L1ME4a LINE L1 -172 5949 5749 1836 143 4 0 chr15 42000835 42001114 -43694640 - AluSx SINE Alu -32 280 1 425 305 64 5 chr15 42001271 42001458 -43694296 + MLT1J1 LTR MaLR 1 198 -248 393 250 28 28 chr15 42001479 42001587 -43694167 + MLT1J2 LTR MaLR 266 373 -77 4796 131 87 50 chr15 42001855 42003241 -43692513 + pTR5 LTR ERV1 171 2295 -143 207 0 0 0 chr15 42003639 42003662 -43692092 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 462 279 151 0 chr15 42003778 42003950 -43691804 - MIR SINE MIR -6 256 59 1803 266 91 11 chr15 42004662 42005507 -43690247 + L1ME3A LINE L1 5030 5950 -220 1585 191 10 7 chr15 42005551 42005855 -43689899 + AluJo SINE Alu 1 305 -7 381 282 106 45 chr15 42006342 42006580 -43689174 - MIR SINE MIR -11 251 3 239 258 367 0 chr15 42007068 42007196 -43688558 + MIR SINE MIR 78 252 -10 2116 113 3 0 chr15 42007239 42007540 -43688214 - AluSq SINE Alu -10 303 2 245 167 117 0 chr15 42007905 42007965 -43687789 + MIR SINE MIR 51 117 -91 2114 97 0 0 chr15 42008855 42009145 -43686609 + AluSx SINE Alu 7 296 -16 394 241 143 0 chr15 42009534 42009646 -43686108 + L2 LINE L2 3143 3270 -2 258 336 35 21 chr15 42010200 42010343 -43685411 - MIR SINE MIR -116 146 2 246 254 0 0 chr15 42010440 42010503 -43685251 + L1ME LINE L1 5600 5662 -459 26 30 0 0 chr15 42010515 42010548 -43685206 + AT_rich Low_complexity Low_complexity 1 33 0 466 291 24 86 chr15 42011171 42011223 -43684531 + MLT1L LTR MaLR 14 68 -547 2295 62 0 3 chr15 42011223 42011511 -43684243 + AluY SINE Alu 7 293 -18 466 291 24 86 chr15 42011511 42011750 -43684004 + MLT1L LTR MaLR 68 287 -328 256 315 14 0 chr15 42011871 42011944 -43683810 + MLT1L LTR MaLR 465 538 -77 345 309 0 0 chr15 42011981 42012065 -43683689 + L2 LINE L2 3230 3313 0 448 268 218 6 chr15 42012236 42012415 -43683339 + MIR SINE MIR 40 256 -6 2081 193 64 46 chr15 42012537 42012767 -43682987 + L1MC4 LINE L1 7358 7582 -460 2372 90 0 0 chr15 42012767 42013078 -43682676 + AluY SINE Alu 1 311 0 2081 193 64 46 chr15 42013078 42013173 -43682581 + L1MC4 LINE L1 7582 7674 -368 1005 181 0 0 chr15 42013173 42013339 -43682415 + FRAM SINE Alu 1 166 0 2081 193 64 46 chr15 42013339 42013573 -43682181 + L1MC4 LINE L1 7674 7928 -114 2060 78 51 7 chr15 42013582 42013876 -43681878 + AluSg1 SINE Alu 1 307 -2 465 81 0 35 chr15 42013880 42013967 -43681787 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 234 116 0 0 chr15 42013968 42014011 -43681743 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 2164 112 0 0 chr15 42014011 42014306 -43681448 + AluSx SINE Alu 8 302 -10 509 214 36 0 chr15 42014330 42014442 -43681312 + L1MC4 LINE L1 7921 8036 -6 811 182 0 7 chr15 42014570 42014718 -43681036 + FAM SINE Alu 12 158 -27 2418 63 0 0 chr15 42015039 42015339 -43680415 + AluY SINE Alu 1 300 -11 2187 76 3 7 chr15 42015617 42015907 -43679847 + AluSx SINE Alu 1 289 -23 445 288 98 38 chr15 42016636 42016820 -43678934 - MIR SINE MIR -20 242 48 800 181 71 33 chr15 42016919 42017101 -43678653 - MER5A DNA MER1_type 0 189 1 701 258 46 40 chr15 42017726 42017974 -43677780 - MIR SINE MIR -6 256 1 183 321 0 121 chr15 42018401 42018434 -43677320 - L2 LINE L2 -38 3275 3240 2081 76 45 7 chr15 42018434 42018725 -43677029 - AluSc SINE Alu -7 302 1 183 321 0 121 chr15 42018725 42018831 -43676923 - L2 LINE L2 -73 3240 3153 2035 111 0 3 chr15 42020052 42020341 -43675413 + AluSg SINE Alu 1 288 -22 2074 120 3 7 chr15 42020354 42020662 -43675092 + AluSx SINE Alu 1 307 -5 1923 121 4 0 chr15 42020662 42020942 -43674812 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr15 42020944 42020973 -43674781 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 362 245 74 98 chr15 42021001 42021040 -43674714 - MIR SINE MIR -69 193 155 752 142 8 0 chr15 42021040 42021167 -43674587 - L1MB5 LINE L1 0 6174 6047 362 245 74 98 chr15 42021167 42021290 -43674464 - MIR SINE MIR -107 155 35 317 182 66 126 chr15 42021961 42022159 -43673595 + L1ME4a LINE L1 5936 6121 0 1972 137 10 0 chr15 42022159 42022458 -43673296 + AluSx SINE Alu 1 302 -10 2104 98 3 7 chr15 42023246 42023541 -43672213 + AluSq SINE Alu 1 294 -19 194 88 0 29 chr15 42024269 42024303 -43671451 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 228 278 153 0 chr15 42024551 42024623 -43671131 - MIR SINE MIR -75 187 105 2351 65 10 0 chr15 42025154 42025448 -43670306 - AluY SINE Alu -14 297 1 504 186 115 35 chr15 42025709 42025822 -43669932 + AluJb SINE Alu 129 250 -62 1701 146 74 26 chr15 42025824 42026215 -43669539 - Charlie1 DNA MER1_type -44 2717 2308 653 217 36 36 chr15 42026215 42026292 -43669462 - Charlie1 DNA MER1_type -2595 166 90 1883 127 37 0 chr15 42026292 42026592 -43669162 + AluSx SINE Alu 1 311 -1 653 217 36 36 chr15 42026592 42026680 -43669074 - Charlie1 DNA MER1_type -2670 91 1 525 269 6 32 chr15 42026698 42026854 -43668900 + L1MC/D LINE L1 5665 5816 -1992 2090 97 17 0 chr15 42027400 42027688 -43668066 + AluSp SINE Alu 1 293 -20 450 282 39 70 chr15 42028208 42028466 -43667288 + L1M4 LINE L1 4787 5031 -1115 1623 160 24 7 chr15 42028466 42028759 -43666995 + AluJo SINE Alu 6 303 -9 450 282 39 70 chr15 42028759 42028883 -43666871 + L1M4 LINE L1 5031 5157 -989 1978 128 0 3 chr15 42028884 42029198 -43666556 + AluSq SINE Alu 1 313 0 2193 67 7 3 chr15 42029273 42029557 -43666197 + AluSp SINE Alu 3 287 -26 2126 158 57 21 chr15 42029606 42030025 -43665729 - L1MB5 LINE L1 -8 6166 5733 464 238 54 71 chr15 42030164 42030274 -43665480 - MIR3 SINE MIR -27 181 72 1177 158 126 12 chr15 42030274 42030555 -43665199 + AluJo SINE Alu 1 310 0 464 238 54 71 chr15 42030555 42030611 -43665143 - MIR3 SINE MIR -136 72 17 391 240 58 10 chr15 42030900 42031004 -43664750 + MIR SINE MIR 70 178 -84 187 328 62 0 chr15 42031594 42031658 -43664096 - L2 LINE L2 -530 2784 2717 494 306 45 6 chr15 42031760 42031917 -43663837 - L2 LINE L2 0 3313 3151 211 204 45 0 chr15 42033004 42033048 -43662706 - MIR3 SINE MIR -6 202 157 188 308 138 31 chr15 42033140 42033270 -43662484 - L2 LINE L2 -2 3311 3168 830 103 9 0 chr15 42033294 42033410 -43662344 + FLAM_C SINE Alu 1 117 -16 195 317 50 0 chr15 42033506 42033566 -43662188 - L2 LINE L2 -257 3056 2994 260 356 48 14 chr15 42033885 42034031 -43661723 - MIR SINE MIR -77 185 35 233 284 181 9 chr15 42034639 42034755 -43660999 + MIR SINE MIR 119 254 -8 32 57 0 0 chr15 42035391 42035444 -43660310 + GC_rich Low_complexity Low_complexity 1 53 0 21 95 0 0 chr15 42035871 42035934 -43659820 + GC_rich Low_complexity Low_complexity 1 63 0 278 296 35 56 chr15 42038287 42038429 -43657325 + MIR SINE MIR 59 197 -65 2269 160 69 18 chr15 42038705 42039199 -43656555 - Charlie1b DNA MER1_type 0 523 5 193 265 82 31 chr15 42042071 42042169 -43653585 - MIR SINE MIR -72 190 88 1724 135 67 3 chr15 42042928 42043210 -43652544 - AluSg1 SINE Alu -9 300 1 881 76 0 54 chr15 42043241 42043426 -43652328 + (TTC)n Simple_repeat Simple_repeat 2 176 0 1886 132 21 0 chr15 42043428 42043717 -43652037 - AluSg SINE Alu -15 295 1 1561 179 24 7 chr15 42044342 42044639 -43651115 - AluJo SINE Alu 0 312 11 2204 252 140 67 chr15 42046779 42048013 -43647741 - HAL1 LINE L1 -45 2462 1084 1222 29 0 65 chr15 42048013 42048183 -43647571 - L1PA4 LINE L1 0 6155 5997 2204 252 140 67 chr15 42048183 42048550 -43647204 - HAL1 LINE L1 -1423 1084 745 357 264 33 85 chr15 42048784 42048996 -43646758 - HAL1 LINE L1 -2268 239 39 2367 200 78 66 chr15 42049522 42049748 -43646006 - L1MD3 LINE L1 0 8042 7820 2338 82 0 0 chr15 42049748 42050039 -43645715 - AluY SINE Alu -20 291 1 2367 200 78 66 chr15 42050039 42051412 -43644342 - L1MD3 LINE L1 -222 7820 6346 2152 92 7 0 chr15 42051530 42051813 -43643941 - AluSq SINE Alu -3 310 26 380 265 256 0 chr15 42052131 42052350 -43643404 - L1MD3 LINE L1 -1947 5861 5587 2041 113 19 23 chr15 42052741 42053050 -43642704 - AluSg SINE Alu -2 308 1 1919 100 50 14 chr15 42053635 42053779 -43641975 - AluSx SINE Alu -22 290 153 2627 49 0 0 chr15 42053779 42054083 -43641671 - AluY SINE Alu -7 304 1 1919 100 50 14 chr15 42054083 42054218 -43641536 - AluSx SINE Alu -159 153 1 2264 87 3 10 chr15 42054510 42054810 -43640944 + AluSc SINE Alu 1 298 -11 359 237 50 65 chr15 42056491 42056630 -43639124 + MIR3 SINE MIR 14 150 -58 544 233 47 0 chr15 42056797 42056947 -43638807 - L1MC/D LINE L1 -2006 5802 5646 541 226 0 0 chr15 42057515 42057621 -43638133 - AluJ SINE Alu -19 293 188 883 126 0 0 chr15 42057621 42057740 -43638014 - AluJ SINE Alu -191 121 3 450 323 77 14 chr15 42058769 42058989 -43636765 - MIR SINE MIR -6 256 23 1092 234 66 80 chr15 42059980 42060543 -43635211 - MLT1H1 LTR MaLR 0 555 1 28 61 0 0 chr15 42061616 42061665 -43634089 + AT_rich Low_complexity Low_complexity 1 49 0 484 269 194 0 chr15 42061881 42062056 -43633698 + MIR SINE MIR 49 257 -5 1905 144 0 7 chr15 42062472 42062764 -43632990 - AluJb SINE Alu -21 291 2 368 290 122 0 chr15 42062789 42062920 -43632834 - MIR3 SINE MIR -28 180 34 627 148 10 20 chr15 42064632 42064733 -43631021 - FLAM_A SINE Alu -42 100 1 964 168 5 11 chr15 42064878 42065063 -43630691 - L1MB5 LINE L1 -7 6167 5984 1779 162 0 20 chr15 42065417 42065720 -43630034 + AluJb SINE Alu 1 297 -15 390 115 0 0 chr15 42065816 42065877 -43629877 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1606 192 49 0 chr15 42065895 42066181 -43629573 - AluJb SINE Alu -12 300 1 1622 179 91 30 chr15 42066761 42067168 -43628586 - LTR37B LTR ERV1 -36 432 1 239 158 0 0 chr15 42067272 42067310 -43628444 - L2 LINE L2 -9 3304 3267 258 296 79 66 chr15 42067373 42067525 -43628229 - MER5B DNA MER1_type -1 177 24 346 199 103 32 chr15 42068609 42068765 -43626989 - L1MC5 LINE L1 -50 7911 7745 336 48 0 0 chr15 42070477 42070519 -43625235 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2022 125 4 0 chr15 42070520 42070799 -43624955 - AluSx SINE Alu -32 280 1 707 294 23 0 chr15 42070978 42071155 -43624599 - MIR SINE MIR -71 191 11 1985 76 0 24 chr15 42072184 42072434 -43623320 + AluY SINE Alu 50 293 -18 2184 108 3 3 chr15 42073256 42073552 -43622202 - AluSp SINE Alu -15 298 3 2055 71 11 4 chr15 42074112 42074378 -43621376 - AluY SINE Alu -7 304 37 22 0 0 0 chr15 42077477 42077499 -43618255 + AT_rich Low_complexity Low_complexity 1 22 0 447 138 174 0 chr15 42077810 42077919 -43617835 + MER3 DNA MER1_type 82 209 0 344 242 77 99 chr15 42078157 42078544 -43617210 + L1M4 LINE L1 3875 4261 -1885 208 236 0 36 chr15 42078892 42078947 -43616807 - MIR SINE MIR -3 259 207 603 245 148 73 chr15 42079124 42079496 -43616258 + Charlie7 DNA MER1_type 263 672 -1940 959 114 0 0 chr15 42079496 42079628 -43616126 + FLAM_C SINE Alu 1 132 -1 603 245 148 73 chr15 42079628 42079680 -43616074 + Charlie7 DNA MER1_type 672 719 -1893 276 184 34 75 chr15 42079678 42079825 -43615929 + Charlie7 DNA MER1_type 2422 2562 -50 * 743 185 20 31 chr15 42079887 42080106 -43615648 - LTR38B LTR ERV1 0 611 397 2089 133 0 3 chr15 42081256 42081564 -43614190 + AluJo SINE Alu 1 307 -5 1795 98 0 8 chr15 42082149 42082383 -43613371 - AluSx SINE Alu -78 234 3 315 170 0 16 chr15 42082387 42082451 -43613303 - FLAM SINE Alu -1 132 76 970 158 43 6 chr15 42082454 42082618 -43613136 - AluSq SINE Alu -9 304 135 8042 166 96 86 chr15 42082719 42083782 -43611972 - Charlie5 DNA MER1_type 0 2624 1573 2082 102 0 34 chr15 42083782 42084076 -43611678 - AluSc SINE Alu -25 284 1 8042 166 96 86 chr15 42084076 42084633 -43611121 - Charlie5 DNA MER1_type -1051 1573 1023 776 130 22 43 chr15 42084633 42084771 -43610983 + FLAM_C SINE Alu 1 135 -8 8042 166 96 86 chr15 42084771 42085559 -43610195 - Charlie5 DNA MER1_type -1601 1023 53 789 177 171 0 chr15 42089104 42089279 -43606475 + MER3 DNA MER1_type 1 205 -4 1270 146 8 65 chr15 42090834 42091010 -43604744 - AluSx SINE Alu -17 295 135 2212 129 0 0 chr15 42091010 42091321 -43604433 - AluSx SINE Alu -1 311 1 1270 146 8 65 chr15 42091321 42091390 -43604364 - AluSx SINE Alu -177 135 64 735 219 102 15 chr15 42091985 42092181 -43603573 + MIR SINE MIR 16 228 -34 426 209 80 133 chr15 42092233 42092348 -43603406 - MER58C DNA MER1_type -2207 213 114 2241 101 0 10 chr15 42092348 42092646 -43603108 + AluSx SINE Alu 1 295 -17 426 209 80 133 chr15 42092646 42092755 -43602999 - MER58C DNA MER1_type -2306 114 1 848 86 86 0 chr15 42092809 42092937 -43602817 + MER85 DNA T2_type 1 139 0 203 265 118 0 chr15 42093059 42093127 -43602627 - MIR SINE MIR -121 141 66 1003 259 92 51 chr15 42094333 42094842 -43600912 - LTR67 LTR ERVL -9 548 19 590 224 141 28 chr15 42094970 42095260 -43600494 - MLT1J LTR MaLR -6 505 183 421 309 65 37 chr15 42097223 42097440 -43598314 - MIR SINE MIR 0 262 40 2364 100 0 0 chr15 42148472 42148781 -43546973 + AluSq SINE Alu 1 309 -4 39 38 0 0 chr15 42149115 42149168 -43546586 + AT_rich Low_complexity Low_complexity 1 53 0 2055 98 0 7 chr15 42149793 42150070 -43545684 + AluSx SINE Alu 1 275 -37 2126 124 0 29 chr15 42152114 42152429 -43543325 - AluJo SINE Alu -6 306 1 2253 118 0 0 chr15 42153354 42153651 -43542103 - AluSx SINE Alu -15 297 1 567 298 30 30 chr15 42153759 42153994 -43541760 - MIR SINE MIR -11 251 17 21 36 0 0 chr15 42154741 42154769 -43540985 + AT_rich Low_complexity Low_complexity 1 28 0 458 256 0 0 chr15 42156157 42156243 -43539511 + MIR3 SINE MIR 76 161 -47 1546 177 61 18 chr15 42156284 42156611 -43539143 + MER7A DNA MER2_type 7 345 -1 1271 180 16 4 chr15 42157634 42157890 -43537864 - L1MD3 LINE L1 -8 7987 7729 22 35 0 0 chr15 42158748 42158777 -43536977 + AT_rich Low_complexity Low_complexity 1 29 0 2056 148 0 3 chr15 42159422 42159719 -43536035 - AluSx SINE Alu -16 296 1 681 286 30 30 chr15 42159822 42160021 -43535733 + MIR3 SINE MIR 5 203 -5 415 293 61 6 chr15 42161366 42161547 -43534207 + Charlie8 DNA MER1_type 10 200 -2217 203 149 0 43 chr15 42163579 42163600 -43532154 + (A)n Simple_repeat Simple_repeat 1 21 -24 2178 108 0 25 chr15 42163600 42163915 -43531839 + AluSg SINE Alu 1 307 -3 203 149 0 43 chr15 42163915 42163940 -43531814 + (A)n Simple_repeat Simple_repeat 21 45 0 3425 117 4 15 chr15 42163961 42164053 -43531701 + L1PB4 LINE L1 5346 5438 -718 2236 110 3 25 chr15 42164053 42164370 -43531384 + AluSx SINE Alu 1 310 -2 3425 117 4 15 chr15 42164370 42164867 -43530887 + L1PB4 LINE L1 5438 5930 -226 377 127 0 0 chr15 42164864 42164927 -43530827 + L1M1 LINE L1 5465 5527 -776 * 802 242 10 0 chr15 42164929 42165123 -43530631 + L1PB4 LINE L1 5943 6138 -18 302 286 101 8 chr15 42165811 42165930 -43529824 + L1MC4a LINE L1 6051 6180 -1628 2265 72 0 0 chr15 42166153 42166469 -43529285 + AluSc SINE Alu 1 316 0 1734 102 126 12 chr15 42167201 42167478 -43528276 + AluSx SINE Alu 1 306 0 883 200 0 24 chr15 42167498 42167663 -43528091 - AluJb SINE Alu -16 296 136 1915 144 4 0 chr15 42168837 42169150 -43526604 + AluSg SINE Alu 1 314 0 1932 152 10 0 chr15 42169740 42170030 -43525724 - AluSx SINE Alu -19 293 1 1952 116 35 11 chr15 42170159 42170443 -43525311 + AluSx SINE Alu 1 291 -21 1020 221 135 7 chr15 42170542 42170845 -43524909 + MER2 DNA MER2_type 3 344 0 2149 93 0 51 chr15 42171572 42171884 -43523870 + AluSx SINE Alu 1 296 -16 2174 132 0 0 chr15 42172073 42172376 -43523378 + AluSx SINE Alu 1 303 -9 2289 206 84 13 chr15 42173620 42174251 -43521503 - L1ME3A LINE L1 -67 6103 5428 623 104 10 0 chr15 42174262 42174358 -43521396 - FLAM_C SINE Alu -8 135 39 1093 258 50 32 chr15 42174366 42175032 -43520722 - L1ME3A LINE L1 -737 5433 4762 1662 191 7 10 chr15 42176255 42176554 -43519200 - AluJo SINE Alu -14 298 1 2056 145 0 3 chr15 42177038 42177349 -43518405 + AluSx SINE Alu 1 310 -2 376 260 53 65 chr15 42180424 42180541 -43515213 + MIR SINE MIR 96 212 -50 1738 166 3 17 chr15 42180541 42180836 -43514918 - AluJo SINE Alu -12 300 10 376 260 53 65 chr15 42180836 42180887 -43514867 + MIR SINE MIR 212 262 0 2148 92 3 14 chr15 42182337 42182631 -43513123 + AluSc SINE Alu 1 291 -18 229 118 0 0 chr15 42183686 42183720 -43512034 + AluJo SINE Alu 1 34 -99 3235 203 12 8 chr15 42183795 42184435 -43511319 - MER82 DNA MER2_type -9 644 2 558 226 25 20 chr15 42184443 42184647 -43511107 + L1MEc LINE L1 953 1157 -5239 497 291 19 19 chr15 42184645 42184855 -43510899 + L1MEc LINE L1 1880 2089 -4307 * 1199 144 5 5 chr15 42184857 42185058 -43510696 + Tigger2a DNA MER2_type 1 201 -233 423 205 13 0 chr15 42185058 42185136 -43510618 + Tigger2a DNA MER2_type 366 444 0 748 197 64 9 chr15 42185136 42185354 -43510400 + L1MEc LINE L1 2093 2322 -4074 1287 160 47 5 chr15 42185355 42185568 -43510186 + AluJb SINE Alu 61 282 -30 207 0 0 0 chr15 42185571 42185594 -43510160 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2686 216 50 16 chr15 42185595 42186419 -43509335 + L1MEc LINE L1 2278 3129 -3086 252 237 0 34 chr15 42187024 42187083 -43508671 - L2 LINE L2 -63 3250 3194 1544 165 6 68 chr15 42187869 42188005 -43507749 + AluJo SINE Alu 12 155 -157 2343 102 0 3 chr15 42188005 42188308 -43507446 + AluSp SINE Alu 1 302 -11 1544 165 6 68 chr15 42188308 42188492 -43507262 + AluJo SINE Alu 155 312 0 435 275 67 11 chr15 42188633 42188811 -43506943 + MER5A DNA MER1_type 1 188 -1 381 269 60 60 chr15 42189312 42189494 -43506260 + MIR3 SINE MIR 19 200 -8 22 0 0 0 chr15 42190294 42190316 -43505438 + AT_rich Low_complexity Low_complexity 1 22 0 221 311 0 0 chr15 42190483 42190544 -43505210 + GA-rich Low_complexity Low_complexity 3 63 0 569 205 36 9 chr15 42190545 42190657 -43505097 + L2 LINE L2 3195 3309 -4 22 0 0 0 chr15 42190762 42190784 -43504970 + AT_rich Low_complexity Low_complexity 1 22 0 2207 108 0 0 chr15 42190818 42191104 -43504650 - AluSx SINE Alu -20 292 7 24 0 0 0 chr15 42191313 42191337 -43504417 + AT_rich Low_complexity Low_complexity 1 24 0 846 204 61 0 chr15 42192454 42192635 -43503119 - MER58A DNA MER1_type 0 224 33 2081 134 7 0 chr15 42192989 42193287 -43502467 - AluSx SINE Alu -12 300 1 2223 123 7 0 chr15 42193560 42193869 -43501885 + AluSx SINE Alu 1 311 -1 945 148 0 19 chr15 42194037 42194133 -43501621 - MER46A DNA MER2_type 0 236 144 573 150 14 143 chr15 42194133 42194280 -43501474 + MER46A DNA MER2_type 1 128 -108 576 299 95 14 chr15 42195909 42196120 -43499634 + MIR SINE MIR 35 262 0 338 198 40 69 chr15 42196592 42196693 -43499061 + L1MEd LINE L1 362 459 -5660 291 28 0 0 chr15 42198257 42198293 -43497461 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1811 169 18 0 chr15 42198305 42198577 -43497177 - AluJo SINE Alu -30 282 6 1460 236 54 68 chr15 42198587 42199120 -43496634 + MER68 LTR ERV1 34 559 -3 383 318 23 47 chr15 42199137 42199351 -43496403 + MER68-int LTR ERV1 18 226 -3965 * 1078 248 47 52 chr15 42199190 42199577 -43496177 + HERVL68 LTR ERVL 22 406 -2631 770 169 0 8 chr15 42199578 42199708 -43496046 + FLAM_C SINE Alu 5 133 -10 2084 167 35 80 chr15 42199801 42199939 -43495815 + HERVL68 LTR ERVL 640 783 -2254 2080 157 0 0 chr15 42199939 42200251 -43495503 + AluSx SINE Alu 1 312 0 2084 167 35 80 chr15 42200251 42200734 -43495020 + HERVL68 LTR ERVL 783 1233 -1804 801 201 6 24 chr15 42200735 42200899 -43494855 - FRAM SINE Alu -15 161 1 1187 202 60 17 chr15 42200914 42201216 -43494538 + HERVL68 LTR ERVL 1239 1553 -1484 4116 211 87 34 chr15 42201216 42201811 -43493943 + HERVL68 LTR ERVL 1670 2232 -805 2323 100 0 3 chr15 42201811 42202120 -43493634 + AluSx SINE Alu 1 308 -4 4116 211 87 34 chr15 42202120 42202806 -43492948 + HERVL68 LTR ERVL 2232 3018 -19 1582 198 45 50 chr15 42202820 42203198 -43492556 + MER68 LTR ERV1 1 376 -186 429 199 53 38 chr15 42203209 42203340 -43492414 - L1MD3 LINE L1 -1 7994 7862 681 345 95 43 chr15 42203697 42204343 -43491411 - L2 LINE L2 -5 3267 2590 2267 117 0 0 chr15 42204343 42204643 -43491111 + AluSg SINE Alu 1 300 -10 1647 278 158 38 chr15 42204657 42205803 -43489951 - L2 LINE L2 0 3313 2013 257 208 0 0 chr15 42206096 42206144 -43489610 + L2 LINE L2 2687 2734 -580 2319 94 3 13 chr15 42207034 42207342 -43488412 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr15 42207671 42207692 -43488062 + AT_rich Low_complexity Low_complexity 1 21 0 510 232 124 41 chr15 42208039 42208254 -43487500 - MIR SINE MIR -32 230 6 2125 140 0 0 chr15 42208336 42208644 -43487110 + AluSx SINE Alu 1 308 -4 685 178 15 15 chr15 42208914 42209049 -43486705 + L1MB4 LINE L1 6040 6174 -6 1926 120 11 0 chr15 42210054 42210320 -43485434 + AluSx SINE Alu 4 272 -40 204 233 0 0 chr15 42210938 42210981 -43484773 + CT-rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr15 42211533 42211570 -43484184 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr15 42211937 42211980 -43483774 + AT_rich Low_complexity Low_complexity 1 43 0 1789 178 0 3 chr15 42211980 42212272 -43483482 - AluJb SINE Alu -21 291 1 2404 72 0 7 chr15 42212319 42212623 -43483131 - AluSx SINE Alu -10 302 1 419 308 52 43 chr15 42213478 42213689 -43482065 + MIR SINE MIR 5 217 -45 21 0 0 0 chr15 42213867 42213888 -43481866 + AT_rich Low_complexity Low_complexity 1 21 0 2505 139 68 55 chr15 42213888 42214387 -43481367 - L1MD3 LINE L1 -16 7979 7471 2484 82 0 0 chr15 42214387 42214691 -43481063 - AluSq SINE Alu -9 304 1 2505 139 68 55 chr15 42214691 42214739 -43481015 - L1MD3 LINE L1 -524 7471 7425 632 220 28 7 chr15 42214739 42214880 -43480874 - MLT1F1 LTR MaLR -419 148 5 756 194 0 0 chr15 42214880 42215014 -43480740 - L1MD3 LINE L1 -716 7279 7146 2146 125 0 7 chr15 42215070 42215374 -43480380 + AluSq SINE Alu 1 302 -11 372 301 11 0 chr15 42217122 42217253 -43478501 - L1ME3A LINE L1 -287 5883 5774 474 61 0 0 chr15 42217602 42217668 -43478086 + Alu SINE Alu 239 304 -8 26 30 0 0 chr15 42217970 42218003 -43477751 + AT_rich Low_complexity Low_complexity 1 33 0 313 258 124 0 chr15 42218073 42218162 -43477592 - MIR3 SINE MIR -14 194 95 1200 176 62 0 chr15 42218371 42218581 -43477173 - MER58A DNA MER1_type 0 224 2 2129 113 0 0 chr15 42219705 42220012 -43475742 - AluSx SINE Alu 0 307 1 212 289 90 87 chr15 42220418 42220684 -43475070 - L2 LINE L2 -20 3252 2986 2213 112 0 13 chr15 42221042 42221347 -43474407 - AluSx SINE Alu -11 301 1 2074 116 0 7 chr15 42221490 42221783 -43473971 - AluSx SINE Alu -21 291 1 282 258 193 69 chr15 42221999 42222232 -43473522 - MIR SINE MIR 0 262 1 503 260 187 0 chr15 42222533 42222683 -43473071 + MER5A DNA MER1_type 9 186 -3 1913 90 11 4 chr15 42223205 42223472 -43472282 - AluSq SINE Alu -15 298 30 353 223 32 53 chr15 42223759 42223853 -43471901 + MIR SINE MIR 161 252 -10 2315 88 0 20 chr15 42223936 42224241 -43471513 + AluSg SINE Alu 1 299 -11 1755 131 9 95 chr15 42224718 42225055 -43470699 + AluJb SINE Alu 1 308 -4 2556 60 0 0 chr15 42225847 42226146 -43469608 - AluY SINE Alu -8 303 5 1247 186 147 8 chr15 42226271 42226529 -43469225 - AluJo SINE Alu -8 294 1 1980 125 7 16 chr15 42226862 42227165 -43468589 + AluJo SINE Alu 6 305 -7 22 0 0 0 chr15 42227341 42227363 -43468391 + AT_rich Low_complexity Low_complexity 1 22 0 2343 107 0 0 chr15 42228759 42229069 -43466685 + AluSx SINE Alu 1 310 -2 1720 115 16 80 chr15 42230110 42230422 -43465332 - AluJb SINE Alu -20 292 1 382 263 23 38 chr15 42230565 42230698 -43465056 - MIR SINE MIR -46 216 86 219 319 76 17 chr15 42231022 42231141 -43464613 - L2 LINE L2 -222 3050 2925 1293 265 78 17 chr15 42231562 42232148 -43463606 - L2 LINE L2 0 3313 2698 1688 148 70 0 chr15 42232164 42232435 -43463319 + AluJo SINE Alu 1 290 -22 202 357 0 0 chr15 42232838 42232908 -43462846 - MIR SINE MIR -94 114 45 663 333 110 43 chr15 42233227 42233735 -43462019 - L2 LINE L2 -562 2752 2211 22 80 0 0 chr15 42234931 42234981 -43460773 + AT_rich Low_complexity Low_complexity 1 50 0 918 196 16 0 chr15 42235054 42235238 -43460516 + MER5A DNA MER1_type 1 187 -2 2413 68 7 3 chr15 42235649 42235958 -43459796 - AluSg SINE Alu 0 310 1 443 306 110 10 chr15 42236167 42236376 -43459378 + MIR SINE MIR 13 242 -20 2101 95 6 57 chr15 42238683 42238998 -43456756 + AluSx SINE Alu 1 299 -13 926 312 109 38 chr15 42239018 42239195 -43456559 - L3 LINE CR1 -166 1411 1248 369 0 0 0 chr15 42239195 42239236 -43456518 + (CA)n Simple_repeat Simple_repeat 2 42 0 926 312 109 38 chr15 42239236 42239536 -43456218 - L3 LINE CR1 -329 1248 900 1688 261 124 25 chr15 42240120 42241060 -43454694 - L2 LINE L2 -6 3307 2273 1078 144 6 17 chr15 42241204 42241378 -43454376 - FRAM SINE Alu -4 172 1 2263 88 3 10 chr15 42242352 42242658 -43453096 + AluSx SINE Alu 1 304 -8 2046 140 0 16 chr15 42242961 42243276 -43452478 - AluSx SINE Alu -2 310 1 1937 142 9 19 chr15 42243558 42244026 -43451728 + MER44D DNA MER2_type 9 604 -1 276 109 0 43 chr15 42244691 42244737 -43451017 - tRNA-Cys-TGC tRNA tRNA -29 46 3 244 278 56 28 chr15 42244744 42244816 -43450938 + MER20B DNA MER1_type 97 170 -613 202 296 0 0 chr15 42245602 42245656 -43450098 + T-rich Low_complexity Low_complexity 1 54 0 2083 125 0 0 chr15 42247111 42247392 -43448362 - AluSx SINE Alu -31 281 1 521 303 82 33 chr15 42247547 42248035 -43447719 + L1M4 LINE L1 3223 3734 -2412 2314 108 0 0 chr15 42248106 42248412 -43447342 + AluSg SINE Alu 1 306 -4 460 256 83 8 chr15 42249262 42249383 -43446371 - L2 LINE L2 0 3313 3184 605 306 83 33 chr15 42249633 42250054 -43445700 - L2 LINE L2 -941 2373 1932 2272 98 0 10 chr15 42250851 42251158 -43444596 + AluSq SINE Alu 1 304 -9 1671 152 35 35 chr15 42251283 42251573 -43444181 + AluJo SINE Alu 1 290 -22 959 231 152 53 chr15 42251590 42251984 -43443770 + L1MC4 LINE L1 7623 7995 0 438 223 9 0 chr15 42252229 42252341 -43443413 - L1ME LINE L1 -318 5803 5691 2021 126 3 0 chr15 42253126 42253411 -43442343 - AluSx SINE Alu -26 286 1 2153 130 7 3 chr15 42254681 42254981 -43440773 + AluJo SINE Alu 1 301 -11 1668 191 0 25 chr15 42254990 42255304 -43440450 + AluJo SINE Alu 1 306 -6 452 295 71 104 chr15 42256165 42256443 -43439311 - L2 LINE L2 -6 3266 2999 1705 63 0 0 chr15 42256443 42256666 -43439088 + L1PA4 LINE L1 5931 6153 -2 452 295 71 104 chr15 42256666 42256723 -43439031 - L2 LINE L2 -273 2999 2942 336 309 49 8 chr15 42256734 42256857 -43438897 + MIR3 SINE MIR 81 208 0 1380 238 236 55 chr15 42257176 42257723 -43438031 + HAL1 LINE L1 126 573 -1934 2316 85 7 3 chr15 42257723 42258017 -43437737 - AluSx SINE Alu -17 295 1 1380 238 236 55 chr15 42258017 42258451 -43437303 + HAL1 LINE L1 573 1285 -1222 427 177 23 6 chr15 42258484 42258659 -43437095 + (TA)n Simple_repeat Simple_repeat 2 179 0 860 115 15 0 chr15 42258660 42258790 -43436964 - AluSq/x SINE Alu -180 132 1 718 252 5 14 chr15 42258825 42259043 -43436711 + HAL1 LINE L1 1382 1597 -910 1513 241 77 22 chr15 42259143 42259679 -43436075 + L1MD3 LINE L1 7429 7993 -2 827 186 40 25 chr15 42260107 42260306 -43435448 - L1MB7 LINE L1 -19 7584 7383 2090 128 3 0 chr15 42260306 42260595 -43435159 - AluSx SINE Alu -10 302 13 1978 163 3 0 chr15 42260781 42261082 -43434672 - AluSx SINE Alu -10 302 1 7081 185 39 29 chr15 42261082 42261897 -43433857 - L1MB7 LINE L1 -307 7296 6490 2382 86 0 0 chr15 42261897 42262198 -43433556 - AluSg SINE Alu -9 301 1 1837 95 72 4 chr15 42262202 42262465 -43433289 - AluSq SINE Alu -19 294 14 7081 185 39 29 chr15 42262465 42264002 -43431752 - L1MB7 LINE L1 -1115 6488 4915 * 11205 167 106 15 chr15 42264001 42264122 -43431632 - L1MB7 LINE L1 -5032 2533 2424 2335 106 0 10 chr15 42264122 42264434 -43431320 - AluSc SINE Alu 0 309 1 11205 167 106 15 chr15 42264434 42264982 -43430772 - L1MB7 LINE L1 -5141 2424 1928 495 0 0 0 chr15 42264982 42265037 -43430717 + (TG)n Simple_repeat Simple_repeat 2 56 0 327 25 0 0 chr15 42265036 42265076 -43430678 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 11205 167 106 15 chr15 42265037 42266713 -43429041 - L1MB7 LINE L1 -5637 1928 15 1509 223 30 9 chr15 42266720 42267183 -43428571 - L1M4 LINE L1 -2811 3335 2863 214 374 72 56 chr15 42267445 42267640 -43428114 - L2 LINE L2 -76 3196 2999 215 290 32 54 chr15 42267684 42267777 -43427977 - L2 LINE L2 -995 2319 2229 2257 115 0 0 chr15 42268049 42268344 -43427410 + AluSx SINE Alu 1 295 -17 189 171 0 0 chr15 42268533 42268568 -43427186 + (CA)n Simple_repeat Simple_repeat 2 36 0 2036 149 0 0 chr15 42268815 42269103 -43426651 + AluSx SINE Alu 1 288 -24 1510 197 3 23 chr15 42271523 42271823 -43423931 + AluJb SINE Alu 3 296 -16 1850 127 59 35 chr15 42272001 42272341 -43423413 + MER7A DNA MER2_type 1 346 0 201 74 0 0 chr15 42272703 42272730 -43423024 + (TTA)n Simple_repeat Simple_repeat 1 27 0 261 221 177 39 chr15 42274394 42274575 -43421179 + L1ME4a LINE L1 5341 5546 -2262 398 263 70 90 chr15 42274577 42274764 -43420990 + L1ME4a LINE L1 5660 5838 -283 1963 163 0 0 chr15 42274764 42275058 -43420696 + AluJb SINE Alu 2 295 -17 398 263 70 90 chr15 42275058 42275227 -43420527 + L1ME4a LINE L1 5838 6009 -112 242 350 146 24 chr15 42275792 42275915 -43419839 + L2 LINE L2 3127 3264 -8 277 286 0 0 chr15 42276314 42276384 -43419370 + MER91A DNA MER1_type 9 78 -118 1574 196 18 7 chr15 42276385 42276670 -43419084 + AluJb SINE Alu 18 305 -7 630 282 134 18 chr15 42276784 42277061 -43418693 + L2 LINE L2 3003 3311 -2 255 194 111 28 chr15 42277063 42277135 -43418619 + MIR SINE MIR 119 196 -66 2081 147 6 13 chr15 42278124 42278438 -43417316 - AluSx SINE Alu 0 312 1 2354 94 0 0 chr15 42278580 42278878 -43416876 - AluSg SINE Alu -11 299 2 675 209 0 31 chr15 42279772 42279901 -43415853 - FLAM_A SINE Alu -8 125 1 228 304 61 40 chr15 42279977 42280125 -43415629 - L1ME LINE L1 -449 5672 5522 446 123 62 0 chr15 42281246 42281327 -43414427 + AluSg/x SINE Alu 215 300 -10 662 279 107 47 chr15 42281509 42282147 -43413607 + HAL1b LINE L1 60 735 -613 1892 137 7 29 chr15 42282169 42282475 -43413279 + AluJo SINE Alu 1 299 -13 934 271 11 47 chr15 42282761 42283123 -43412631 + L1MC4a LINE L1 6560 6908 -900 2106 123 0 3 chr15 42283191 42283496 -43412258 - AluSq SINE Alu 0 304 1 645 186 57 40 chr15 42283508 42283685 -43412069 + L1MC5 LINE L1 6959 7138 -823 253 64 21 43 chr15 42283688 42283735 -43412019 + LTR14B LTR ERVK 1 46 -562 * 1894 94 127 25 chr15 42283723 42284084 -43411670 + LTR14B LTR ERVK 211 608 0 711 226 102 22 chr15 42284084 42284446 -43411308 + L1MC5 LINE L1 7134 7524 -437 341 239 109 104 chr15 42284531 42284732 -43411022 + L1ME3A LINE L1 5958 6159 -3 1454 125 17 8 chr15 42285561 42285801 -43409953 + MER50 LTR ERV1 49 290 -444 250 176 0 20 chr15 42285802 42285852 -43409902 - FAM SINE Alu -25 141 93 2113 134 20 3 chr15 42285852 42286202 -43409552 + MER4C LTR ERV1 1 356 -109 2857 119 87 15 chr15 42286204 42286734 -43409020 + MER4B LTR ERV1 1 568 -42 345 86 35 0 chr15 42286731 42286789 -43408965 - AluSp/q SINE Alu -4 299 240 * 511 50 25 25 chr15 42286849 42286929 -43408825 + MER4C LTR ERV1 386 465 0 342 113 0 0 chr15 42286929 42286980 -43408774 - FAM SINE Alu -79 96 46 21 57 0 0 chr15 42287023 42287058 -43408696 + AT_rich Low_complexity Low_complexity 1 35 0 39 68 0 0 chr15 42287096 42287170 -43408584 + AT_rich Low_complexity Low_complexity 1 74 0 2081 123 32 0 chr15 42287177 42287461 -43408293 + AluSx SINE Alu 1 293 -19 1225 134 0 0 chr15 42287543 42287714 -43408040 - AluSp SINE Alu -7 306 136 2037 114 14 4 chr15 42287902 42288213 -43407541 - AluSx SINE Alu 0 314 1 808 249 82 67 chr15 42288362 42288703 -43407051 + L2 LINE L2 2949 3294 -19 2406 87 0 0 chr15 42290124 42290422 -43405332 + AluSx SINE Alu 1 298 -14 920 197 7 109 chr15 42290502 42290776 -43404978 + L2 LINE L2 2216 2461 -853 588 200 37 7 chr15 42290779 42290914 -43404840 + L1ME2 LINE L1 5548 5686 -478 359 191 92 84 chr15 42290915 42291046 -43404708 + L1ME2 LINE L1 5966 6097 -67 803 204 0 0 chr15 42291052 42291194 -43404560 + FLAM_C SINE Alu 1 142 -1 257 170 0 0 chr15 42291204 42291251 -43404503 + L1ME2 LINE L1 6108 6154 -10 432 259 87 11 chr15 42291736 42292000 -43403754 - L1P5 LINE L1 -611 5543 5268 331 334 120 55 chr15 42293180 42293746 -43402008 + L1M4c LINE L1 892 1494 -4890 366 319 49 6 chr15 42293787 42293950 -43401804 + L1M4c LINE L1 2697 2866 -3516 280 171 211 0 chr15 42293964 42294040 -43401714 - L1M4 LINE L1 -1311 4835 4744 2357 80 0 0 chr15 42294102 42294401 -43401353 + AluSc SINE Alu 1 299 -10 315 317 187 4 chr15 42294439 42294669 -43401085 - L1M4 LINE L1 -1533 4613 4342 2410 72 0 3 chr15 42294808 42295101 -43400653 + AluY SINE Alu 1 292 -19 14311 117 25 22 chr15 42295607 42298013 -43397741 + Tigger1 DNA MER2_type 1 2413 -5 2262 113 0 0 chr15 42298154 42298456 -43397298 + AluSc SINE Alu 1 302 -7 325 291 99 58 chr15 42298969 42299117 -43396637 + L1M4c LINE L1 3131 3272 -3110 1268 187 56 39 chr15 42299117 42299401 -43396353 + AluJo SINE Alu 1 289 -23 325 291 99 58 chr15 42299401 42299461 -43396293 + L1M4c LINE L1 3272 3328 -3054 1701 179 16 3 chr15 42299461 42299768 -43395986 + AluJb SINE Alu 1 311 -1 325 291 99 58 chr15 42299768 42299847 -43395907 + L1M4c LINE L1 3328 3402 -2980 874 150 0 8 chr15 42299847 42299980 -43395774 - FLAM_C SINE Alu -1 132 1 325 291 99 58 chr15 42299980 42300085 -43395669 + L1M4c LINE L1 3402 3541 -2841 958 203 0 11 chr15 42300090 42300267 -43395487 + FAM SINE Alu 1 175 0 2810 179 34 17 chr15 42300295 42300886 -43394868 + L1MB5 LINE L1 5566 6166 -8 439 111 0 0 chr15 42300895 42300967 -43394787 - AluSq SINE Alu -9 304 233 1139 121 0 0 chr15 42300967 42301116 -43394638 - AluSq SINE Alu -163 149 1 38 18 0 18 chr15 42301118 42301144 -43394610 + AT_rich Low_complexity Low_complexity 1 26 -29 2086 129 0 0 chr15 42301144 42301431 -43394323 - AluSx SINE Alu -25 287 1 38 18 0 18 chr15 42301431 42301460 -43394294 + AT_rich Low_complexity Low_complexity 26 55 0 690 185 0 0 chr15 42301593 42301701 -43394053 + FAM SINE Alu 1 108 -77 1279 151 27 13 chr15 42301739 42301964 -43393790 + AluJb SINE Alu 84 311 -1 1478 96 10 0 chr15 42302608 42302805 -43392949 + AluSq SINE Alu 1 199 -114 467 65 0 0 chr15 42302805 42302867 -43392887 + AluSq SINE Alu 240 301 -11 1850 133 7 18 chr15 42303062 42303384 -43392370 + AluSx SINE Alu 1 319 0 760 281 46 9 chr15 42303544 42303761 -43391993 + MIR SINE MIR 38 262 0 2351 55 3 3 chr15 42303843 42304133 -43391621 + AluY SINE Alu 1 290 -21 696 186 24 8 chr15 42304773 42304897 -43390857 - MER46A DNA MER2_type -63 173 48 342 274 57 9 chr15 42305763 42305869 -43389885 + MIR3 SINE MIR 87 197 -11 4509 179 34 28 chr15 42306199 42306672 -43389082 - MER21B LTR ERV1 -21 842 373 4694 103 13 11 chr15 42306672 42307303 -43388451 + MER41B LTR ERV1 1 632 -3 4509 179 34 28 chr15 42307303 42307341 -43388413 - MER21B LTR ERV1 -490 373 337 4710 74 2 0 chr15 42307341 42307894 -43387860 + MER41A LTR ERV1 1 554 0 4509 179 34 28 chr15 42307894 42308218 -43387536 - MER21B LTR ERV1 -526 337 1 2173 133 0 0 chr15 42308334 42308634 -43387120 + AluSx SINE Alu 5 304 -8 5095 51 8 2 chr15 42309140 42309727 -43386027 - LTR10C LTR ERV1 0 591 1 26 30 0 0 chr15 42309732 42309765 -43385989 + AT_rich Low_complexity Low_complexity 1 33 0 2034 175 61 160 chr15 42309964 42310048 -43385706 + LTR8A LTR ERV1 34 125 -602 4128 111 46 3 chr15 42310048 42310633 -43385121 - MER4B LTR ERV1 0 610 1 2034 175 61 160 chr15 42310633 42311318 -43384436 + LTR8A LTR ERV1 125 727 0 209 321 12 37 chr15 42311430 42311511 -43384243 - MIR SINE MIR -114 94 16 2079 147 3 10 chr15 42312765 42313079 -43382675 + AluJb SINE Alu 1 312 0 1480 161 59 53 chr15 42313401 42313705 -43382049 + AluJb SINE Alu 1 306 -6 306 348 22 7 chr15 42313872 42314007 -43381747 + L2 LINE L2 2851 2987 -285 272 322 86 13 chr15 42314101 42314253 -43381501 + L2 LINE L2 3021 3183 -130 2765 233 60 19 chr15 42314363 42315049 -43380705 + MER21B LTR ERV1 98 811 -52 316 341 57 24 chr15 42315069 42315192 -43380562 + L2 LINE L2 3141 3267 -5 514 251 137 14 chr15 42315348 42315567 -43380187 + L2 LINE L2 2150 2395 -919 210 200 211 44 chr15 42316384 42316474 -43379280 - MIR SINE MIR 0 262 158 1601 163 83 7 chr15 42316474 42316751 -43379003 + AluJo SINE Alu 1 298 -14 585 200 87 27 chr15 42316781 42316931 -43378823 - MIR SINE MIR -102 160 2 915 195 0 6 chr15 42316964 42317133 -43378621 - FRAM SINE Alu -8 168 1 3180 185 66 97 chr15 42317328 42317850 -43377904 + L1ME1 LINE L1 4656 5193 -973 2381 65 10 3 chr15 42317850 42318142 -43377612 + AluSq SINE Alu 1 294 -19 3180 185 66 97 chr15 42318142 42319190 -43376564 + L1ME1 LINE L1 5193 6161 -5 1725 193 13 0 chr15 42319211 42319516 -43376238 + AluJo SINE Alu 1 309 -3 807 167 23 0 chr15 42319712 42319844 -43375910 - FAM SINE Alu -8 41 1 214 267 13 27 chr15 42319851 42319926 -43375828 + L2 LINE L2 2979 3052 -220 1833 98 94 0 chr15 42320336 42320592 -43375162 - AluSg SINE Alu -30 280 1 368 317 61 51 chr15 42320751 42321140 -43374614 + LTR33 LTR ERVL 23 456 -65 1835 155 7 0 chr15 42321852 42322123 -43373631 - AluJo SINE Alu -30 282 10 850 143 21 29 chr15 42323383 42323523 -43372231 - FLAM_C SINE Alu -4 139 1 360 211 53 88 chr15 42323524 42323695 -43372059 + L1MC4 LINE L1 5730 5894 -1914 * 1298 184 28 14 chr15 42323669 42323957 -43371797 + L1MB4 LINE L1 5596 5887 -293 1561 282 75 36 chr15 42324209 42325007 -43370747 + L1MC4 LINE L1 7214 8042 0 2447 78 0 0 chr15 42325075 42325382 -43370372 + AluY SINE Alu 1 307 -4 689 223 10 100 chr15 42326259 42326568 -43369186 + L1M4 LINE L1 4404 4684 -1462 351 0 0 0 chr15 42326859 42326898 -43368856 + (CA)n Simple_repeat Simple_repeat 2 40 0 2196 103 30 0 chr15 42327335 42327637 -43368117 + AluSq SINE Alu 3 313 0 265 199 126 102 chr15 42327641 42327847 -43367907 + L1ME4a LINE L1 5905 6115 -6 1852 138 10 43 chr15 42328012 42328317 -43367437 - AluSx SINE Alu -17 295 1 245 222 83 14 chr15 42328504 42328576 -43367178 + MIR3 SINE MIR 119 195 -13 807 226 119 58 chr15 42328828 42329054 -43366700 + MIR SINE MIR 2 241 -21 2725 96 14 6 chr15 42329279 42329645 -43366109 - THE1C LTR MaLR -4 371 3 512 206 137 0 chr15 42329720 42329851 -43365903 + MER103 DNA DNA 9 157 -9 2011 199 70 95 chr15 42330339 42330981 -43364773 + L1MC5 LINE L1 7121 7740 -221 1990 133 0 0 chr15 42330981 42331266 -43364488 + AluSx SINE Alu 1 285 -27 2011 199 70 95 chr15 42331266 42331431 -43364323 + L1MC5 LINE L1 7740 7908 -53 35 0 0 0 chr15 42331707 42331742 -43364012 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 42332052 42332073 -43363681 + AT_rich Low_complexity Low_complexity 1 21 0 626 237 119 10 chr15 42333374 42333504 -43362250 + MIR SINE MIR 48 207 -55 982 149 17 6 chr15 42333504 42333685 -43362069 + L1MA8 LINE L1 6109 6291 0 626 237 119 10 chr15 42333685 42333748 -43362006 + MIR SINE MIR 207 262 0 766 202 16 0 chr15 42334234 42334363 -43361391 - FLAM_A SINE Alu -2 131 1 315 126 53 116 chr15 42334818 42334861 -43360893 - L1MB3 LINE L1 -8 6175 6140 2458 50 3 10 chr15 42334861 42335159 -43360595 - AluY SINE Alu -15 296 1 315 126 53 116 chr15 42335159 42335210 -43360544 - L1MB3 LINE L1 -43 6140 6087 288 333 61 0 chr15 42335235 42335349 -43360405 - MIR SINE MIR -119 143 23 409 288 72 45 chr15 42335938 42336230 -43359524 + L2 LINE L2 2165 2464 -850 344 209 100 27 chr15 42336230 42336340 -43359414 + L2 LINE L2 3191 3308 -5 923 120 0 23 chr15 42336344 42336477 -43359277 - FLAM_C SINE Alu -2 131 2 320 312 68 65 chr15 42336483 42336557 -43359197 + L2 LINE L2 2465 2537 -777 724 211 8 8 chr15 42336557 42336685 -43359069 + FLAM_A SINE Alu 2 129 -4 320 312 68 65 chr15 42336685 42336918 -43358836 + L2 LINE L2 2537 2773 -541 255 31 0 0 chr15 42337451 42337483 -43358271 + (GA)n Simple_repeat Simple_repeat 1 32 0 277 321 107 0 chr15 42338094 42338118 -43357636 + L2 LINE L2 2030 2050 -1264 282 56 0 0 chr15 42338118 42338154 -43357600 + (CA)n Simple_repeat Simple_repeat 2 37 0 277 321 107 0 chr15 42338154 42338260 -43357494 + L2 LINE L2 2050 2174 -1140 1757 128 0 0 chr15 42338260 42338502 -43357252 - AluSx SINE Alu -13 299 58 910 188 38 28 chr15 42338529 42338742 -43357012 + L2 LINE L2 3099 3313 0 2013 116 46 0 chr15 42338795 42339079 -43356675 - AluSx SINE Alu -15 297 1 410 305 144 0 chr15 42339336 42339523 -43356231 - LTR33A LTR ERVL -23 500 287 534 251 121 54 chr15 42339889 42340128 -43355626 + L3 LINE CR1 1315 1569 -8 2213 115 10 13 chr15 42340178 42340491 -43355263 - AluSx SINE Alu 0 312 1 2592 170 80 19 chr15 42340682 42341158 -43354596 + MLT1D LTR MaLR 1 505 0 2060 137 3 0 chr15 42341221 42341520 -43354234 + AluSx SINE Alu 1 300 -12 560 283 120 26 chr15 42341542 42341775 -43353979 + MIR SINE MIR 8 262 0 252 264 0 0 chr15 42341800 42341887 -43353867 + (CTA)n Simple_repeat Simple_repeat 1 87 0 1867 162 0 23 chr15 42341913 42342215 -43353539 + AluJo SINE Alu 1 295 -17 807 266 36 16 chr15 42342897 42343145 -43352609 + MIR SINE MIR 7 259 -3 2234 106 7 13 chr15 42343466 42343789 -43351965 + AluSq SINE Alu 1 313 0 2095 114 3 13 chr15 42343791 42344089 -43351665 + AluSg SINE Alu 1 295 -15 787 304 69 28 chr15 42344338 42344730 -43351024 + L1ME4a LINE L1 5497 5904 -217 2195 196 73 2 chr15 42344880 42345318 -43350436 + MLT1D LTR MaLR 1 469 -36 231 204 0 0 chr15 42345333 42345377 -43350377 - MLT1K LTR MaLR -413 175 132 22 56 0 0 chr15 42345456 42345492 -43350262 + AT_rich Low_complexity Low_complexity 1 36 0 1870 98 117 8 chr15 42345546 42345812 -43349942 - AluSg1 SINE Alu -14 295 1 3552 99 10 29 chr15 42345814 42346188 -43349566 - L1PA16 LINE L1 -12 6154 5791 1532 203 3 23 chr15 42346188 42346489 -43349265 - AluJo SINE Alu -14 298 4 3552 99 10 29 chr15 42346489 42346628 -43349126 - L1PA16 LINE L1 -375 5791 5651 5184 197 22 17 chr15 42346672 42347724 -43348030 - L1P LINE L1 -1007 5139 4094 2092 127 3 9 chr15 42347724 42348039 -43347715 - AluSp SINE Alu 0 313 1 1750 163 51 7 chr15 42348040 42348335 -43347419 - AluSx SINE Alu -4 308 1 5184 197 22 17 chr15 42348335 42348409 -43347345 - L1P LINE L1 -2051 4095 4005 471 176 29 0 chr15 42348403 42348505 -43347249 - L1MA8 LINE L1 -29 6262 6158 * 611 310 84 7 chr15 42348503 42348800 -43346954 - L1ME4a LINE L1 -252 5869 5550 248 289 62 31 chr15 42348966 42349063 -43346691 + L1MC5 LINE L1 5439 5538 -2270 366 345 0 0 chr15 42349230 42349349 -43346405 + L1MC5 LINE L1 5536 5654 -2154 512 297 93 0 chr15 42349503 42349685 -43346069 + MLT1J LTR MaLR 1 199 -312 1475 199 71 0 chr15 42349943 42350224 -43345530 - AluJo SINE Alu -11 301 1 2396 96 0 0 chr15 42350421 42350723 -43345031 + AluSx SINE Alu 1 302 -10 315 222 14 42 chr15 42351162 42351234 -43344520 - MER58A DNA MER1_type -37 70 1 611 279 44 77 chr15 42351234 42351531 -43344223 + L1MC5 LINE L1 7157 7443 -518 2484 104 8 33 chr15 42351572 42351700 -43344054 - THE1A LTR MaLR 0 355 225 2178 103 10 0 chr15 42351700 42351991 -43343763 - AluSg SINE Alu -16 294 1 2484 104 8 33 chr15 42351991 42352226 -43343528 - THE1A LTR MaLR -130 225 1 12629 90 10 1 chr15 42352226 42353792 -43341962 - THE1A-int LTR MaLR 0 1580 1 2241 136 17 3 chr15 42353792 42354137 -43341617 - THE1A LTR MaLR 0 355 6 261 129 35 71 chr15 42354275 42354360 -43341394 + L1ME3 LINE L1 5987 6068 -94 1258 121 0 0 chr15 42354414 42354587 -43341167 - AluSx SINE Alu -17 295 123 229 36 0 0 chr15 42354587 42354615 -43341139 + THE1A LTR MaLR 328 355 0 932 103 0 0 chr15 42354627 42354743 -43341011 - AluSx SINE Alu -189 123 8 1772 164 7 0 chr15 42354783 42355069 -43340685 - AluJo SINE Alu -24 288 1 23 78 0 0 chr15 42355071 42355122 -43340632 + AT_rich Low_complexity Low_complexity 1 51 0 3597 34 0 0 chr15 42355122 42355540 -43340214 - L1PA5 LINE L1 -8 6146 5729 2478 53 0 0 chr15 42355542 42355842 -43339912 - AluY SINE Alu -10 301 2 643 221 24 75 chr15 42355867 42356080 -43339674 + MLT1K LTR MaLR 325 526 -62 195 238 0 0 chr15 42356514 42356556 -43339198 - L2 LINE L2 -76 3196 3155 334 230 14 14 chr15 42357034 42357108 -43338646 + MIR SINE MIR 29 102 -160 1820 167 3 3 chr15 42357108 42357414 -43338340 - AluJo SINE Alu -6 306 1 1418 145 0 28 chr15 42357414 42357662 -43338092 + Tigger2 DNA MER2_type 2478 2718 0 2115 99 11 0 chr15 42358168 42358472 -43337282 - AluSq SINE Alu 0 307 1 205 185 213 65 chr15 42358519 42358627 -43337127 + MIR SINE MIR 139 262 0 * 269 297 11 11 chr15 42358616 42358707 -43337047 - MIR SINE MIR -101 161 71 501 248 107 84 chr15 42359004 42359387 -43336367 + MLT1K LTR MaLR 188 579 -9 1875 118 10 24 chr15 42359542 42359839 -43335915 + AluSx SINE Alu 18 310 -2 207 229 145 36 chr15 42360059 42360142 -43335612 + L2 LINE L2 3169 3260 -12 355 151 0 0 chr15 42361411 42361464 -43334290 - MER47B DNA MER2_type 0 418 366 1335 156 4 37 chr15 42361471 42361714 -43334040 + AluJo SINE Alu 1 235 -77 189 0 0 0 chr15 42361717 42361738 -43334016 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1721 156 124 3 chr15 42361762 42362077 -43333677 - MER47B DNA MER2_type -65 353 1 2102 104 0 10 chr15 42362494 42362791 -43332963 - AluSx SINE Alu -18 294 1 539 271 88 16 chr15 42362868 42363060 -43332694 + L2 LINE L2 3108 3313 0 233 287 127 40 chr15 42363064 42363214 -43332540 - MIR SINE MIR 0 262 100 2106 114 0 3 chr15 42363820 42364126 -43331628 + AluSx SINE Alu 6 310 -2 2236 93 7 0 chr15 42364356 42364657 -43331097 + AluSq SINE Alu 1 303 -10 685 242 100 21 chr15 42364901 42365141 -43330613 - MIR SINE MIR -2 260 2 262 283 141 10 chr15 42365437 42365536 -43330218 - L2 LINE L2 -4 3268 3157 381 93 0 0 chr15 42366399 42366453 -43329301 + (TG)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr15 42366457 42366485 -43329269 + GC_rich Low_complexity Low_complexity 1 28 0 246 269 291 8 chr15 42368062 42368196 -43327558 + L3b LINE CR1 1409 1580 -3 1727 185 0 0 chr15 42368794 42369097 -43326657 + AluJb SINE Alu 10 312 0 3802 186 55 14 chr15 42369460 42370314 -43325440 - L1MC4a LINE L1 -2 7806 6918 252 0 0 0 chr15 42370487 42370515 -43325239 + (A)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr15 42370515 42370544 -43325210 + (TA)n Simple_repeat Simple_repeat 1 29 0 962 196 94 76 chr15 42370544 42370843 -43324911 + L1MC4 LINE L1 5476 5768 -2040 1728 160 14 10 chr15 42370843 42371136 -43324618 + AluJb SINE Alu 1 294 -18 962 196 94 76 chr15 42371136 42371267 -43324487 + L1MC4 LINE L1 5768 5895 -1913 3394 136 48 7 chr15 42371267 42371847 -43323907 + L1MB7 LINE L1 5570 6173 -11 962 196 94 76 chr15 42371847 42372037 -43323717 + L1MC4 LINE L1 5895 6080 -1728 2224 99 3 0 chr15 42372037 42372339 -43323415 - AluSp SINE Alu -10 303 1 962 196 94 76 chr15 42372339 42372837 -43322917 + L1MC4 LINE L1 6080 6538 -1270 1701 163 0 13 chr15 42372837 42373137 -43322617 + AluJo SINE Alu 1 296 -16 962 196 94 76 chr15 42373137 42373207 -43322547 + L1MC4 LINE L1 6538 6605 -1203 897 149 24 12 chr15 42373334 42373502 -43322252 - AluJb SINE Alu -142 170 1 585 267 157 29 chr15 42373503 42373784 -43321970 - L1MC/D LINE L1 -1987 5821 5505 216 0 0 0 chr15 42373801 42373825 -43321929 + (TA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr15 42373830 42373860 -43321894 + (T)n Simple_repeat Simple_repeat 1 30 0 2137 95 7 3 chr15 42374581 42374876 -43320878 + AluSq SINE Alu 1 296 -17 4426 176 60 36 chr15 42375140 42375332 -43320422 - L1MA9 LINE L1 -38 6274 6088 1432 172 38 17 chr15 42375332 42375622 -43320132 - AluSx SINE Alu -16 296 1 4426 176 60 36 chr15 42375622 42376083 -43319671 - L1MA9 LINE L1 -224 6088 5640 2224 103 0 3 chr15 42376083 42376393 -43319361 - AluY SINE Alu -2 309 1 4426 176 60 36 chr15 42376393 42376815 -43318939 - L1MA9 LINE L1 -672 5640 5164 924 173 30 41 chr15 42376899 42377096 -43318658 + MER105 DNA DNA 6 200 -4 522 208 50 0 chr15 42377149 42377269 -43318485 + MIR SINE MIR 66 191 -71 346 190 25 25 chr15 42377291 42377370 -43318384 + L2 LINE L2 2188 2266 -1048 1666 85 0 0 chr15 42377392 42377629 -43318125 + L1PA13 LINE L1 5907 6143 -18 1090 322 91 47 chr15 42377631 42378046 -43317708 + L2 LINE L2 2344 2739 -574 2267 85 0 0 chr15 42378046 42378341 -43317413 - AluSx SINE Alu -17 295 1 1090 322 91 47 chr15 42378341 42378832 -43316922 + L2 LINE L2 2739 3283 -30 1057 148 0 11 chr15 42378894 42379083 -43316671 - AluJb SINE Alu -6 306 120 1336 169 35 14 chr15 42379266 42379550 -43316204 - AluYa5 SINE Alu -11 290 1 1868 167 91 60 chr15 42380501 42380985 -43314769 - MLT1D LTR MaLR -2 503 5 874 206 65 32 chr15 42381148 42381395 -43314359 + Charlie4 DNA MER1_type 2 256 -1705 777 177 13 6 chr15 42381419 42381577 -43314177 + Charlie4 DNA MER1_type 1803 1961 0 2131 71 57 0 chr15 42382228 42382509 -43313245 - AluSx SINE Alu -15 297 1 1673 110 0 0 chr15 42382558 42382786 -43312968 - AluSg/x SINE Alu -11 299 72 219 219 0 0 chr15 42384118 42384159 -43311595 + CT-rich Low_complexity Low_complexity 2 42 0 2127 102 30 0 chr15 42386544 42386847 -43308907 + AluSx SINE Alu 1 312 0 2220 100 0 0 chr15 42390926 42391225 -43304529 + AluSx SINE Alu 1 299 -13 207 167 0 37 chr15 42393089 42393143 -43302611 + T-rich Low_complexity Low_complexity 2 53 0 233 169 17 0 chr15 42393868 42393927 -43301827 + (TG)n Simple_repeat Simple_repeat 2 61 0 23 0 0 0 chr15 42394190 42394213 -43301541 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 42394946 42394978 -43300776 + AT_rich Low_complexity Low_complexity 1 32 0 1970 123 3 3 chr15 42394978 42395271 -43300483 + AluSx SINE Alu 1 293 -19 1497 146 101 0 chr15 42395713 42395981 -43299773 - AluJb SINE Alu -17 295 1 829 84 0 8 chr15 42396961 42397080 -43298674 + AluSp/q SINE Alu 188 305 -8 1525 74 5 15 chr15 42397080 42397283 -43298471 - AluSp SINE Alu -112 201 1 794 170 75 6 chr15 42398822 42398981 -43296773 - MER45A DNA AcHobo 0 178 9 193 240 62 62 chr15 42400962 42401027 -43294727 + MIR SINE MIR 124 191 -71 2226 88 7 0 chr15 42401027 42401321 -43294433 + AluSx SINE Alu 1 296 -16 193 240 62 62 chr15 42401321 42401351 -43294403 + MIR SINE MIR 190 219 -43 395 285 173 32 chr15 42402166 42402514 -43293240 + L2 LINE L2 2635 3033 -239 1789 133 50 10 chr15 42402532 42402832 -43292922 - AluJb SINE Alu 0 312 1 1600 151 35 21 chr15 42403416 42403700 -43292054 - AluJb SINE Alu -24 288 1 510 211 32 87 chr15 42403955 42404034 -43291720 - MER5A DNA MER1_type -1 188 106 2551 27 0 0 chr15 42404034 42404331 -43291423 - AluY SINE Alu -14 297 1 510 211 32 87 chr15 42404331 42404436 -43291318 - MER5A DNA MER1_type -83 106 14 216 309 183 23 chr15 42404914 42405089 -43290665 + MIR SINE MIR 60 262 0 246 278 28 0 chr15 42405092 42405164 -43290590 - MER116 DNA Mariner -6 74 1 2210 91 7 0 chr15 42406365 42406674 -43289080 + AluSp SINE Alu 1 311 -2 312 224 51 31 chr15 42407441 42407539 -43288215 + Charlie8 DNA MER1_type 133 232 -2185 557 262 113 4 chr15 42407955 42408184 -43287570 - L1ME4a LINE L1 -178 5943 5690 180 313 36 36 chr15 42408555 42408638 -43287116 - L2 LINE L2 -3 3269 3187 1560 157 54 11 chr15 42409689 42409969 -43285785 - AluJo SINE Alu -20 292 1 4744 188 112 64 chr15 42410822 42410966 -43284788 + L1MC4 LINE L1 6506 6642 -1400 523 26 40 0 chr15 42410966 42411042 -43284712 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 4744 188 112 64 chr15 42411042 42411141 -43284613 + L1MC4 LINE L1 6642 6735 -1307 2031 121 0 3 chr15 42411141 42411430 -43284324 + AluSq SINE Alu 1 288 -25 4744 188 112 64 chr15 42411430 42412647 -43283107 + L1MC4 LINE L1 6735 8037 -5 423 216 153 60 chr15 42412692 42412960 -43282794 + L1ME4a LINE L1 5748 6040 -81 1085 124 0 0 chr15 42416093 42416246 -43279508 - AluSx SINE Alu -19 293 141 2086 87 7 17 chr15 42416249 42416548 -43279206 - AluSc SINE Alu -11 298 3 852 83 7 90 chr15 42416672 42416739 -43279015 - AluSx SINE Alu -179 133 83 1840 73 87 11 chr15 42416739 42417026 -43278728 + AluY SINE Alu 1 309 -2 852 83 7 90 chr15 42417026 42417103 -43278651 - AluSx SINE Alu -229 83 1 353 322 92 99 chr15 42417800 42418073 -43277681 - L2 LINE L2 -13 3259 2989 2120 96 0 17 chr15 42418389 42418682 -43277072 - AluSq SINE Alu -21 292 5 470 208 180 55 chr15 42420864 42420881 -43274873 - MER58C DNA MER1_type -2213 207 194 1782 96 0 4 chr15 42420881 42421131 -43274623 - AluSg1 SINE Alu -60 249 1 470 208 180 55 chr15 42421131 42421296 -43274458 - MER58C DNA MER1_type -2226 194 2 2241 93 0 0 chr15 42422869 42423169 -43272585 - AluSq SINE Alu -13 300 1 1171 179 15 5 chr15 42423172 42423373 -43272381 + MER20 DNA MER1_type 1 203 -16 24 0 0 0 chr15 42423586 42423610 -43272144 + AT_rich Low_complexity Low_complexity 1 24 0 369 228 121 54 chr15 42423759 42423908 -43271846 - L1ME1 LINE L1 -300 5866 5708 2123 89 0 0 chr15 42425256 42425587 -43270167 + AluSc SINE Alu 1 331 0 636 163 52 7 chr15 42426193 42426328 -43269426 - Charlie4 DNA MER1_type 0 1961 1821 1112 140 0 0 chr15 42426479 42426643 -43269111 - FRAM SINE Alu -20 156 1 2256 92 0 7 chr15 42426649 42426953 -43268801 - AluSx SINE Alu -10 302 1 852 271 92 18 chr15 42427188 42427608 -43268146 + L1ME3A LINE L1 5431 5911 -259 2295 67 3 3 chr15 42427608 42427908 -43267846 - AluY SINE Alu -11 300 1 852 271 92 18 chr15 42427908 42427949 -43267805 + L1ME3A LINE L1 5911 5948 -222 294 29 0 0 chr15 42427953 42427988 -43267766 + (TA)n Simple_repeat Simple_repeat 1 35 0 1538 177 91 86 chr15 42430461 42430924 -43264830 + MLT1C LTR MaLR 1 465 -2 258 348 43 22 chr15 42431102 42431240 -43264514 + MIR3 SINE MIR 53 193 -15 1415 175 3 92 chr15 42431278 42431603 -43264151 - AluJb SINE Alu -16 296 1 1546 118 0 13 chr15 42431638 42431866 -43263888 + AluJb SINE Alu 81 305 -7 1948 127 21 0 chr15 42432593 42432884 -43262870 - AluSx SINE Alu -15 297 1 1568 181 19 29 chr15 42432910 42433224 -43262530 + AluJo SINE Alu 1 311 -1 1032 157 0 0 chr15 42434526 42434692 -43261062 - AluSg/x SINE Alu -16 296 131 1948 123 3 13 chr15 42434774 42435075 -43260679 + AluSx SINE Alu 1 298 -14 2294 122 42 31 chr15 42435940 42436325 -43259429 + Tigger2a DNA MER2_type 1 389 -45 1281 134 4 69 chr15 42436537 42436768 -43258986 + AluJb SINE Alu 85 300 -12 846 141 7 0 chr15 42437337 42437472 -43258282 - FLAM_C SINE Alu -7 136 1 318 372 84 53 chr15 42437575 42438459 -43257295 + L2 LINE L2 2067 2977 -337 183 80 0 0 chr15 42438466 42438491 -43257263 + (TC)n Simple_repeat Simple_repeat 1 25 0 1950 152 0 3 chr15 42438491 42438794 -43256960 - AluSx SINE Alu -10 302 1 1203 162 33 14 chr15 42438809 42439019 -43256735 - MER20 DNA MER1_type 0 219 6 466 119 0 0 chr15 42439017 42439084 -43256670 + MER20 DNA MER1_type 149 215 -4 * 642 293 71 4 chr15 42439088 42439313 -43256441 - MER112 DNA MER1_type 0 260 21 794 83 9 0 chr15 42440763 42440872 -43254882 + HY1 scRNA scRNA 2 111 -1 1761 143 10 27 chr15 42441630 42441931 -43253823 + AluJo SINE Alu 1 296 -16 726 255 222 5 chr15 42442109 42442497 -43253257 - L1ME4a LINE L1 -183 5938 5467 1796 100 10 93 chr15 42442497 42442841 -43252913 + AluSx SINE Alu 2 319 0 1638 122 4 8 chr15 42442993 42443238 -43252516 - AluSx SINE Alu -63 249 6 2082 128 0 0 chr15 42443316 42443622 -43252132 - AluSx SINE Alu -2 310 5 2172 62 3 24 chr15 42444135 42444424 -43251330 - AluY SINE Alu -26 285 3 22 0 0 0 chr15 42444605 42444627 -43251127 + AT_rich Low_complexity Low_complexity 1 22 0 501 110 37 0 chr15 42444629 42444711 -43251043 + AluSg1 SINE Alu 3 87 -222 189 0 0 0 chr15 42444724 42444745 -43251009 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1766 65 10 55 chr15 42444876 42445186 -43250568 + AluY SINE Alu 5 300 -11 231 293 231 0 chr15 42445961 42446062 -43249692 + L1M4 LINE L1 3661 3737 -2409 4625 124 38 30 chr15 42446062 42446392 -43249362 + L1MA4 LINE L1 5461 5787 -513 1935 143 7 0 chr15 42446392 42446700 -43249054 + AluJb SINE Alu 1 310 -2 4625 124 38 30 chr15 42446700 42447202 -43248552 + L1MA4 LINE L1 5787 6300 0 231 293 231 0 chr15 42447202 42447407 -43248347 + L1M4 LINE L1 3737 4038 -2108 1494 144 30 15 chr15 42447420 42447690 -43248064 - L1MA5 LINE L1 0 6300 6027 3288 155 53 10 chr15 42447737 42448336 -43247418 + L1MB2 LINE L1 5540 6164 -7 1310 153 55 36 chr15 42448357 42448631 -43247123 + AluJo SINE Alu 1 279 -33 2077 110 0 16 chr15 42448831 42449139 -43246615 - AluSg SINE Alu -7 303 1 1936 145 0 0 chr15 42449447 42449737 -43246017 + AluSq SINE Alu 1 290 -23 865 206 0 0 chr15 42449792 42449957 -43245797 - FRAM SINE Alu -15 161 1 673 294 91 5 chr15 42450100 42450321 -43245433 - MIR SINE MIR -10 252 13 1919 125 24 0 chr15 42450750 42451046 -43244708 - AluSx SINE Alu -9 303 1 594 184 44 0 chr15 42451310 42451424 -43244330 + FLAM_A SINE Alu 13 131 -11 400 112 26 0 chr15 42451886 42451962 -43243792 + MER51A LTR ERV1 1 61 -579 4480 99 26 2 chr15 42451962 42452587 -43243167 + MER51C LTR ERV1 1 640 0 246 288 0 14 chr15 42453926 42453999 -43241755 - L2 LINE L2 -1 3271 3200 2193 79 7 3 chr15 42454626 42454930 -43240824 - AluSq SINE Alu -8 305 1 210 37 0 0 chr15 42455908 42455935 -43239819 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 194 91 30 0 chr15 42456351 42456384 -43239370 + (CA)n Simple_repeat Simple_repeat 2 35 0 288 266 127 0 chr15 42456430 42456509 -43239245 - MIR SINE MIR -115 147 59 2108 135 3 16 chr15 42457361 42457673 -43238081 - AluJb SINE Alu -4 308 1 2154 136 3 13 chr15 42457940 42458250 -43237504 - AluSx SINE Alu -4 308 2 636 219 67 49 chr15 42458967 42459079 -43236675 + MER5B DNA MER1_type 1 118 -60 2251 110 7 3 chr15 42459079 42459388 -43236366 - AluSq SINE Alu -3 310 1 636 219 67 49 chr15 42459388 42459439 -43236315 + MER5B DNA MER1_type 118 167 -11 188 354 35 42 chr15 42459477 42459621 -43236133 + L2 LINE L2 2246 2388 -926 1778 131 45 24 chr15 42459923 42460213 -43235541 - AluJb SINE Alu -16 296 1 659 284 12 12 chr15 42460907 42461076 -43234678 - MIR SINE MIR -60 202 34 817 217 165 29 chr15 42461356 42461738 -43234016 + L1MC4a LINE L1 5735 6168 -1640 2127 116 0 23 chr15 42461925 42462063 -43233691 + AluSq SINE Alu 1 141 -172 2469 87 0 3 chr15 42462063 42462375 -43233379 + AluY SINE Alu 1 311 0 2127 116 0 23 chr15 42462375 42462538 -43233216 + AluSq SINE Alu 141 295 -18 2384 92 3 0 chr15 42462546 42462838 -43232916 + AluSx SINE Alu 6 298 -14 2097 106 0 11 chr15 42463017 42463311 -43232443 - AluSq SINE Alu 0 306 16 461 62 15 0 chr15 42463454 42463519 -43232235 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 1792 156 7 28 chr15 42463542 42463683 -43232071 - AluJb SINE Alu -36 276 141 2228 104 0 0 chr15 42463683 42463987 -43231767 - AluSx SINE Alu 0 308 5 1792 156 7 28 chr15 42463987 42464126 -43231628 - AluJb SINE Alu -171 141 1 396 260 96 0 chr15 42464927 42465031 -43230723 - MIR SINE MIR -59 203 90 2072 143 3 3 chr15 42465262 42465563 -43230191 + AluJb SINE Alu 1 301 -11 435 324 21 7 chr15 42465630 42465772 -43229982 - MIR SINE MIR -115 147 4 393 22 0 0 chr15 42465779 42465825 -43229929 + (TG)n Simple_repeat Simple_repeat 2 47 0 1366 194 8 4 chr15 42465826 42466068 -43229686 - AluJo SINE Alu -26 286 44 2046 117 13 3 chr15 42466490 42466789 -43228965 - AluSq SINE Alu -11 302 1 211 261 0 15 chr15 42467012 42467077 -43228677 + (TG)n Simple_repeat Simple_repeat 2 65 0 1199 197 36 136 chr15 42467838 42468011 -43227743 - L1MC4 LINE L1 0 8042 7853 216 97 0 0 chr15 42468011 42468042 -43227712 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1199 197 36 136 chr15 42468042 42468426 -43227328 - L1MC4 LINE L1 -189 7853 7541 2134 128 0 0 chr15 42468438 42468726 -43227028 + AluSx SINE Alu 1 288 -24 438 20 0 0 chr15 42468727 42468778 -43226976 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 338 268 188 45 chr15 42468788 42469012 -43226742 - L1ME LINE L1 -301 5820 5565 1820 127 29 52 chr15 42469217 42469397 -43226357 - AluJb SINE Alu 0 312 140 2302 112 3 13 chr15 42469397 42469710 -43226044 - AluSx SINE Alu -2 310 1 1820 127 29 52 chr15 42469710 42469837 -43225917 - AluJb SINE Alu -172 140 12 1919 171 0 0 chr15 42470265 42470574 -43225180 + AluJb SINE Alu 1 309 -3 1610 167 20 76 chr15 42470793 42471200 -43224554 + MER58D DNA MER1_type 3 386 0 501 286 102 10 chr15 42471455 42471661 -43224093 - MIR SINE MIR -17 245 21 205 262 229 0 chr15 42472184 42472306 -43223448 + MIR SINE MIR 28 177 -85 205 232 18 18 chr15 42473141 42473197 -43222557 + MER5B DNA MER1_type 105 160 -18 206 327 35 75 chr15 42473414 42473613 -43222141 + L2 LINE L2 2905 3095 -177 266 167 50 0 chr15 42473873 42473933 -43221821 - MIR3 SINE MIR -2 206 144 1613 179 4 11 chr15 42473997 42474270 -43221484 - AluJb SINE Alu -37 275 5 190 281 88 79 chr15 42475162 42475276 -43220478 + L2 LINE L2 3175 3289 -24 251 330 32 0 chr15 42475807 42475901 -43219853 + MIR SINE MIR 27 123 -85 203 329 0 14 chr15 42475894 42475967 -43219787 - MIR SINE MIR -117 91 20 * 419 247 44 77 chr15 42477092 42477274 -43218480 + L1ME4a LINE L1 5942 6117 -4 435 299 184 5 chr15 42477738 42477955 -43217799 - MIR SINE MIR 0 262 7 443 273 62 34 chr15 42479058 42479234 -43216520 - MIR SINE MIR -50 212 32 378 299 8 67 chr15 42479456 42479590 -43216164 - MIR SINE MIR -73 189 64 196 189 122 68 chr15 42479572 42479646 -43216108 - L2 LINE L2 0 3313 3236 * 669 78 52 0 chr15 42479902 42480017 -43215737 + CT-rich Low_complexity Low_complexity 3 123 0 1379 236 4 0 chr15 42480017 42480284 -43215470 - AluJo SINE Alu -44 268 1 394 287 138 18 chr15 42480293 42480460 -43215294 - MIR SINE MIR -74 188 2 1901 178 23 68 chr15 42480799 42481283 -43214471 - MLT1C LTR MaLR 0 467 6 2332 98 0 26 chr15 42481852 42482157 -43213597 - AluSx SINE Alu -15 297 1 386 321 36 36 chr15 42482288 42482456 -43213298 + MIR3 SINE MIR 32 199 -9 273 277 24 0 chr15 42483158 42483241 -43212513 + MIR3 SINE MIR 109 193 -15 305 261 112 39 chr15 42484035 42484295 -43211459 - L1MC4a LINE L1 -1797 6011 5733 303 275 43 0 chr15 42484333 42484402 -43211352 - L2 LINE L2 -18 3254 3183 1023 175 6 6 chr15 42485019 42485202 -43210552 - MER3 DNA MER1_type 0 209 27 1840 98 0 4 chr15 42485281 42485517 -43210237 - AluSq SINE Alu -78 235 1 190 286 181 38 chr15 42485518 42485651 -43210103 - MIR3 SINE MIR -42 166 15 1054 173 16 5 chr15 42486542 42486727 -43209027 - MER5A DNA MER1_type -2 187 1 235 319 119 32 chr15 42487140 42487325 -43208429 - L2 LINE L2 -218 3054 2854 246 303 40 13 chr15 42487566 42487642 -43208112 - L2 LINE L2 -5 3267 3190 352 318 128 6 chr15 42488341 42488520 -43207234 + MIR SINE MIR 33 233 -29 1879 186 38 9 chr15 42488655 42489078 -43206676 - L1MB8 LINE L1 -52 6126 5693 972 196 19 53 chr15 42489532 42489741 -43206013 + AluJo SINE Alu 1 202 -110 365 255 38 38 chr15 42490052 42490158 -43205596 + MIR SINE MIR 41 146 -62 1737 174 3 37 chr15 42490730 42491051 -43204703 - AluJo SINE Alu -2 310 1 1512 179 34 110 chr15 42492358 42492893 -43202861 + L1MC5 LINE L1 7181 7674 -287 2176 139 3 0 chr15 42492893 42493202 -43202552 + AluSx SINE Alu 1 310 -2 712 10 0 40 chr15 42493782 42493881 -43201873 + (CA)n Simple_repeat Simple_repeat 2 96 0 213 205 0 0 chr15 42493884 42493923 -43201831 + CT-rich Low_complexity Low_complexity 4 42 0 287 288 68 30 chr15 42494142 42494274 -43201480 - MIR SINE MIR -50 212 76 498 288 166 0 chr15 42494976 42495115 -43200639 - MER5A DNA MER1_type 0 189 28 2246 100 10 3 chr15 42495621 42495912 -43199842 + AluSx SINE Alu 1 293 -19 297 0 0 0 chr15 42496578 42496611 -43199143 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr15 42496611 42496632 -43199122 + (TAG)n Simple_repeat Simple_repeat 2 22 0 1800 174 10 3 chr15 42496737 42497035 -43198719 + AluJo SINE Alu 4 303 -9 226 303 7 56 chr15 42497062 42497204 -43198550 + HAL1 LINE L1 2368 2502 -5 280 202 202 32 chr15 42497270 42497394 -43198360 + MIR3 SINE MIR 21 165 -43 292 328 84 15 chr15 42498658 42498789 -43196965 - MIR SINE MIR -12 250 111 310 302 191 33 chr15 42498797 42499012 -43196742 - MIR SINE MIR -1 261 13 2226 115 0 10 chr15 42499167 42499471 -43196283 + AluSx SINE Alu 1 301 -11 193 273 18 0 chr15 42500017 42500072 -43195682 + MIR SINE MIR 90 145 -63 322 224 0 129 chr15 42500270 42500325 -43195429 - MER5B DNA MER1_type -73 105 71 1654 184 3 34 chr15 42500325 42500646 -43195108 - AluJo SINE Alu -1 311 1 322 224 0 129 chr15 42500646 42500706 -43195048 - MER5B DNA MER1_type -107 71 5 274 169 0 19 chr15 42501458 42501520 -43194234 + AluYa8 SINE Alu 127 170 -130 621 194 0 0 chr15 42501520 42501623 -43194131 + AluJb SINE Alu 205 307 -5 666 291 33 33 chr15 42501624 42501908 -43193846 + L1ME4a LINE L1 5664 5950 -171 2533 80 0 0 chr15 42501908 42502219 -43193535 + AluSx SINE Alu 1 311 -1 666 291 33 33 chr15 42502219 42502323 -43193431 + L1ME4a LINE L1 5949 6052 -69 522 0 0 0 chr15 42502329 42502387 -43193367 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 257 327 84 0 chr15 42502535 42502642 -43193112 - L2 LINE L2 -2 3270 3155 284 223 138 62 chr15 42502966 42503096 -43192658 - MIR3 SINE MIR -10 198 59 218 160 20 0 chr15 42504408 42504458 -43191296 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 1811 147 49 3 chr15 42506355 42506640 -43189114 - AluSx SINE Alu -14 298 1 334 205 24 24 chr15 42506724 42506807 -43188947 + MER97a DNA MER1_type? 14 96 -798 463 151 14 0 chr15 42506808 42506881 -43188873 + AluS SINE Alu 2 75 -238 1470 167 68 64 chr15 42509011 42509139 -43186615 + AluJo SINE Alu 1 127 -185 2329 94 3 0 chr15 42509139 42509436 -43186318 - AluSq SINE Alu -15 298 1 1470 167 68 64 chr15 42509436 42509618 -43186136 + AluJo SINE Alu 127 312 0 2403 103 0 3 chr15 42509618 42509928 -43185826 + AluSq SINE Alu 1 309 -4 2113 125 0 19 chr15 42509930 42510243 -43185511 + AluSq SINE Alu 1 307 -6 2361 82 17 3 chr15 42511183 42511477 -43184277 + AluSx SINE Alu 1 298 -14 383 286 161 10 chr15 42511808 42512007 -43183747 + MIR SINE MIR 34 262 0 544 241 185 10 chr15 42512413 42512608 -43183146 + MIR SINE MIR 14 242 -20 23 0 0 0 chr15 42515046 42515069 -43180685 + AT_rich Low_complexity Low_complexity 1 23 0 776 153 23 15 chr15 42515354 42515485 -43180269 - FLAM_C SINE Alu 0 133 2 890 112 0 0 chr15 42515489 42515614 -43180140 - AluSp/q SINE Alu -4 309 185 2320 88 0 3 chr15 42515616 42515912 -43179842 + AluSg SINE Alu 1 295 -15 472 277 66 15 chr15 42515920 42516057 -43179697 + MIR SINE MIR 48 191 -71 1553 144 134 25 chr15 42516094 42516371 -43179383 - AluJb SINE Alu -5 307 1 392 267 95 70 chr15 42516372 42516499 -43179255 - L1ME4a LINE L1 -276 5845 5723 1949 111 52 0 chr15 42516499 42516813 -43178941 - AluSq SINE Alu 0 328 1 392 267 95 70 chr15 42516813 42516834 -43178920 - L1ME4a LINE L1 -398 5723 5704 2313 109 3 0 chr15 42516834 42517136 -43178618 - AluSp SINE Alu -10 303 1 392 267 95 70 chr15 42517136 42517270 -43178484 - L1ME4a LINE L1 -417 5704 5554 608 159 0 0 chr15 42517317 42517405 -43178349 + AluJ/FLAM SINE Alu 2 89 -223 2012 141 3 3 chr15 42517638 42517963 -43177791 - AluSx SINE Alu 0 312 1 272 292 142 26 chr15 42518279 42518392 -43177362 + MIR SINE MIR 32 157 -105 29 70 0 0 chr15 42518392 42518449 -43177305 + AT_rich Low_complexity Low_complexity 1 57 0 547 223 51 126 chr15 42518452 42518557 -43177197 - MIR SINE MIR -15 247 162 940 100 0 0 chr15 42518557 42518703 -43177051 - FLAM_C SINE Alu 0 147 2 547 223 51 126 chr15 42518703 42518810 -43176944 - MIR SINE MIR -100 162 49 2274 122 3 0 chr15 42519096 42519400 -43176354 + AluSx SINE Alu 1 305 -7 2359 96 3 7 chr15 42519785 42520088 -43175666 + AluSx SINE Alu 1 302 -10 396 299 91 26 chr15 42520113 42520325 -43175429 + MIR SINE MIR 1 223 -37 496 82 0 14 chr15 42520561 42520634 -43175120 - L1MB8 LINE L1 -6 6172 6101 2296 161 83 4 chr15 42520636 42520926 -43174828 - L1M4 LINE L1 -408 5770 5504 2299 97 7 3 chr15 42520926 42521224 -43174530 - AluSg SINE Alu -11 299 1 2090 122 7 7 chr15 42521224 42521520 -43174234 - AluSx SINE Alu -16 296 1 2296 161 83 4 chr15 42521520 42521862 -43173892 - L1M4 LINE L1 -673 5505 5088 1674 163 64 11 chr15 42522083 42522366 -43173388 - AluJb SINE Alu -14 298 1 32 26 0 0 chr15 42522452 42522491 -43173263 + AT_rich Low_complexity Low_complexity 1 39 0 1780 191 10 3 chr15 42522565 42522864 -43172890 - AluJo SINE Alu -11 301 1 2236 128 0 3 chr15 42522964 42523270 -43172484 - AluSx SINE Alu -7 305 1 2091 181 81 57 chr15 42523461 42524123 -43171631 - L1MD3 LINE L1 -10 8002 7359 387 179 105 0 chr15 42524104 42524199 -43171555 - L1MC5 LINE L1 -853 7108 7004 * 2053 82 52 0 chr15 42524296 42524592 -43171162 - AluY SINE Alu 0 310 1 1491 174 71 0 chr15 42524617 42524899 -43170855 + AluJb SINE Alu 1 302 -10 281 229 0 0 chr15 42524899 42524953 -43170801 + L3 LINE CR1 1518 1574 -3 2263 84 16 42 chr15 42525665 42525973 -43169781 + AluSx SINE Alu 2 301 -11 334 231 250 9 chr15 42527204 42527312 -43168442 - L2 LINE L2 -5 3308 3175 250 288 63 78 chr15 42527541 42527716 -43168038 + L1ME LINE L1 5332 5503 -618 1681 137 49 53 chr15 42527716 42528026 -43167728 + AluJo SINE Alu 3 311 0 250 288 63 78 chr15 42528026 42528181 -43167573 + L1ME LINE L1 5503 5659 -462 1434 228 16 3 chr15 42529391 42529698 -43166056 + MLT1F LTR MaLR 11 321 -221 225 319 87 0 chr15 42529735 42529804 -43165950 - L2 LINE L2 -42 3230 3156 327 345 72 29 chr15 42530009 42530218 -43165536 - LTR67 LTR ERVL -258 299 82 1570 194 52 3 chr15 42530412 42530737 -43165017 - MER58B DNA MER1_type 0 341 1 2860 110 55 11 chr15 42530995 42531449 -43164305 - MER39 LTR ERV1 0 707 234 1374 153 8 34 chr15 42531449 42531684 -43164070 - AluJb SINE Alu 0 312 84 1132 165 67 0 chr15 42531684 42531908 -43163846 - MER39 LTR ERV1 -465 242 4 964 193 0 0 chr15 42531923 42532094 -43163660 - FRAM SINE Alu -13 163 1 2299 105 7 0 chr15 42532154 42532458 -43163296 + AluSg1 SINE Alu 1 306 -3 1753 171 42 0 chr15 42532723 42533009 -43162745 - AluJo SINE Alu -14 298 1 1158 239 0 12 chr15 42533268 42533515 -43162239 + MIR SINE MIR 14 257 -5 1775 160 4 0 chr15 42533526 42533801 -43161953 + AluJo SINE Alu 1 276 -36 2127 126 0 0 chr15 42534090 42534383 -43161371 - AluY SINE Alu -18 293 1 391 279 76 6 chr15 42534397 42534555 -43161199 - L1ME LINE L1 -477 5644 5476 957 171 6 6 chr15 42534631 42534789 -43160965 - FRAM SINE Alu -8 158 1 1809 140 0 32 chr15 42534997 42535276 -43160478 - AluJo SINE Alu -16 296 27 1267 127 11 0 chr15 42535282 42535471 -43160283 - AluSg/x SINE Alu -1 309 119 1309 169 119 0 chr15 42535671 42535890 -43159864 - AluJo SINE Alu -57 255 11 461 308 65 33 chr15 42535901 42536115 -43159639 - L1ME LINE L1 -939 5207 4987 260 252 218 8 chr15 42536317 42536583 -43159171 + L1ME4a LINE L1 5694 6015 -106 1728 182 7 3 chr15 42536678 42536974 -43158780 + AluJo SINE Alu 2 298 -14 22 0 0 0 chr15 42537008 42537030 -43158724 + AT_rich Low_complexity Low_complexity 1 22 0 491 266 65 19 chr15 42537311 42537465 -43158289 + MIR3 SINE MIR 27 187 -21 336 24 0 0 chr15 42537648 42537689 -43158065 + (TG)n Simple_repeat Simple_repeat 2 42 0 1663 112 0 5 chr15 42537705 42537929 -43157825 - AluSg SINE Alu -87 223 1 341 307 0 26 chr15 42538266 42538380 -43157374 - MIR3 SINE MIR -48 160 50 251 261 29 14 chr15 42538399 42538468 -43157286 + MIR SINE MIR 42 111 -97 587 110 0 147 chr15 42539089 42539225 -43156529 + MLT1A1 LTR MaLR 1 116 -249 1463 159 17 0 chr15 42539249 42539482 -43156272 - AluJo SINE Alu -21 291 55 6635 121 214 45 chr15 42539485 42540936 -43154818 - pTR5 LTR ERV1 0 2438 743 336 172 0 0 chr15 42540936 42540994 -43154760 - AluJo SINE Alu -244 58 1 1563 144 20 0 chr15 42540994 42541244 -43154510 + MLT1A1 LTR MaLR 111 365 0 2356 112 0 0 chr15 42541308 42541620 -43154134 - AluSx SINE Alu 0 312 1 875 157 0 21 chr15 42541655 42541795 -43153959 - FLAM_C SINE Alu -6 137 1 237 200 0 33 chr15 42541809 42541869 -43153885 - LTR49 LTR ERV1 -79 516 459 2631 231 73 79 chr15 42541883 42541908 -43153846 - L1MC4 LINE L1 -1 8041 8017 2243 110 0 0 chr15 42541908 42542198 -43153556 + AluSg1 SINE Alu 1 290 -19 2631 231 73 79 chr15 42542198 42542406 -43153348 - L1MC4 LINE L1 -25 8017 7809 2220 141 0 0 chr15 42542406 42542718 -43153036 + AluSx SINE Alu 1 312 0 2631 231 73 79 chr15 42542718 42543261 -43152493 - L1MC4 LINE L1 -233 7809 7264 2295 112 3 3 chr15 42543261 42543566 -43152188 - AluSx SINE Alu -7 305 1 2631 231 73 79 chr15 42543566 42543734 -43152020 - L1MC4 LINE L1 -778 7264 7097 1749 191 6 16 chr15 42543734 42544049 -43151705 - AluJo SINE Alu 0 312 1 2631 231 73 79 chr15 42544049 42544090 -43151664 - L1MC4 LINE L1 -945 7097 7057 2427 101 0 9 chr15 42544090 42544406 -43151348 - AluSq SINE Alu 0 313 1 2631 231 73 79 chr15 42544406 42544644 -43151110 - L1MC4 LINE L1 -985 7057 6821 1090 147 12 0 chr15 42544664 42544827 -43150927 - AluSg/x SINE Alu -13 299 135 335 227 82 41 chr15 42544867 42544964 -43150790 - HAL1b LINE L1 -500 848 748 237 339 161 0 chr15 42545079 42545209 -43150545 - MER5A DNA MER1_type -3 186 36 323 309 94 35 chr15 42545339 42545540 -43150214 - L1MDa LINE L1 -4436 2104 1892 512 146 0 11 chr15 42545598 42545687 -43150067 - FLAM_C SINE Alu -2 141 54 751 289 84 59 chr15 42545701 42546023 -43149731 - HAL1 LINE L1 -1071 1436 1107 21 0 0 0 chr15 42546023 42546044 -43149710 + AT_rich Low_complexity Low_complexity 1 21 0 1836 177 0 17 chr15 42546044 42546338 -43149416 - AluJb SINE Alu -23 289 1 285 214 286 0 chr15 42546850 42546948 -43148806 + MIR SINE MIR 28 153 -109 2365 92 0 10 chr15 42547016 42547320 -43148434 - AluSx SINE Alu -11 301 1 1418 217 118 32 chr15 42547548 42547638 -43148116 - HAL1 LINE L1 -167 2340 2259 2147 92 17 24 chr15 42547638 42547932 -43147822 - AluSg SINE Alu -18 292 1 1418 217 118 32 chr15 42547932 42548366 -43147388 - HAL1 LINE L1 -248 2259 1771 1249 148 114 25 chr15 42548721 42548958 -43146796 - AluJo SINE Alu -21 291 34 233 259 68 61 chr15 42549101 42549248 -43146506 + MIR SINE MIR 109 256 -6 271 300 138 8 chr15 42549952 42550082 -43145672 + L2 LINE L2 3125 3271 -1 198 118 0 0 chr15 42550244 42550278 -43145476 + (TC)n Simple_repeat Simple_repeat 1 34 0 297 222 42 0 chr15 42550343 42550415 -43145339 - MIR SINE MIR -79 183 109 696 240 54 50 chr15 42551442 42551700 -43144054 - MIR SINE MIR 0 262 4 665 215 41 58 chr15 42552029 42552201 -43143553 - MER5B DNA MER1_type -3 175 7 375 268 54 2 chr15 42552254 42552387 -43143367 + MIR SINE MIR 16 154 -62 277 237 79 53 chr15 42552418 42552494 -43143260 - L2 LINE L2 -21 3251 3174 649 221 87 23 chr15 42553204 42553376 -43142378 + MIR3 SINE MIR 1 183 -25 1127 247 99 0 chr15 42553492 42553775 -43141979 + MLT1G LTR MaLR 278 588 -2 260 300 147 47 chr15 42554102 42554272 -43141482 - MIR SINE MIR -47 215 29 203 243 129 0 chr15 42554839 42554909 -43140845 - MIR SINE MIR -123 139 61 265 27 82 27 chr15 42555215 42555288 -43140466 + (CCGCG)n Simple_repeat Simple_repeat 4 80 0 259 289 53 0 chr15 42555936 42556012 -43139742 - MIR SINE MIR -76 186 107 190 274 0 0 chr15 42556556 42556607 -43139147 + MIR SINE MIR 82 132 -130 324 260 26 13 chr15 42557041 42557118 -43138636 + MIR3 SINE MIR 82 159 -49 228 315 130 9 chr15 42557696 42557804 -43137950 - L2 LINE L2 -10 3262 3142 1530 223 79 25 chr15 42557925 42558474 -43137280 - L1ME3A LINE L1 -86 6084 5478 263 231 0 62 chr15 42558528 42558593 -43137161 - MIR SINE MIR -181 81 21 232 271 21 42 chr15 42559458 42559554 -43136200 - MIR SINE MIR -94 168 75 406 170 107 45 chr15 42560273 42560385 -43135369 - MIR SINE MIR -63 145 27 329 312 160 16 chr15 42560558 42560683 -43135071 - MIR SINE MIR -96 166 24 1961 103 55 10 chr15 42560683 42560974 -43134780 - AluSx SINE Alu -8 304 1 1145 123 5 11 chr15 42562196 42562383 -43133371 + AluSg/x SINE Alu 118 303 -9 418 259 41 13 chr15 42562943 42563112 -43132642 - MIR SINE MIR -62 146 30 187 138 0 0 chr15 42563979 42564008 -43131746 + MIR SINE MIR 122 150 -112 683 256 56 0 chr15 42564025 42564185 -43131569 + MER5B DNA MER1_type 10 178 0 1026 142 0 6 chr15 42564295 42564457 -43131297 + FRAM SINE Alu 1 161 -5 190 278 144 11 chr15 42564570 42564660 -43131094 - MIR SINE MIR -57 205 104 206 333 18 53 chr15 42565178 42565292 -43130462 + MIR SINE MIR 23 132 -76 265 259 129 35 chr15 42565712 42565828 -43129926 + L2 LINE L2 3182 3308 -5 349 240 31 31 chr15 42566558 42566654 -43129100 + MIR SINE MIR 45 140 -122 292 268 79 47 chr15 42566803 42566930 -43128824 + MIR SINE MIR 39 169 -93 228 357 36 0 chr15 42567856 42567968 -43127786 - MIR SINE MIR 0 262 147 565 281 68 0 chr15 42568015 42568161 -43127593 - MIR SINE MIR -67 195 40 2221 99 10 0 chr15 42568397 42568700 -43127054 + AluSg SINE Alu 1 306 -4 326 168 36 0 chr15 42568768 42568834 -43126920 + MIR SINE MIR 77 140 -68 2396 143 42 42 chr15 42569515 42569842 -43125912 - MSTC LTR MaLR 0 428 99 2220 102 0 0 chr15 42569842 42570136 -43125618 - AluSx SINE Alu -14 298 5 2396 143 42 42 chr15 42570136 42570236 -43125518 - MSTC LTR MaLR -328 100 1 230 280 120 33 chr15 42570365 42570515 -43125239 - L1P1 LINE L1 -500 5655 5493 1898 144 3 10 chr15 42571004 42571317 -43124437 - AluSx SINE Alu -1 311 1 594 197 17 20 chr15 42573055 42573204 -43122550 + MIR SINE MIR 2 147 -62 501 215 70 13 chr15 42573842 42574000 -43121754 - L1MC5 LINE L1 -466 7495 7329 662 98 15 2 chr15 42574017 42574219 -43121535 - Charlie5 DNA MER1_type -29 2583 2332 1591 143 72 0 chr15 42574221 42574511 -43121243 - AluJb SINE Alu 0 309 1 1276 139 6 0 chr15 42574533 42574784 -43120970 - Charlie5 DNA MER1_type -2491 121 1 2058 133 17 0 chr15 42575054 42575356 -43120398 + AluSx SINE Alu 1 307 -5 794 261 135 0 chr15 42575370 42575600 -43120154 + MIR SINE MIR 2 262 0 359 282 0 29 chr15 42575614 42575717 -43120037 - MER5A DNA MER1_type -47 142 43 5028 141 43 25 chr15 42575839 42576726 -43119028 + MER4D LTR ERV1 1 903 0 341 347 90 30 chr15 42576997 42577164 -43118590 - MIR3 SINE MIR -29 179 3 2184 184 97 16 chr15 42577186 42577621 -43118133 - MLT-int LTR MaLR 0 1735 1266 234 165 0 127 chr15 42577650 42577729 -43118025 - MLT-int LTR MaLR -695 1040 972 803 190 36 82 chr15 42577829 42578024 -43117730 - MLT-int LTR MaLR -907 828 643 * 3580 177 38 20 chr15 42578022 42578705 -43117049 - MLT1A1-int LTR MaLR -1040 695 1 1850 164 80 15 chr15 42578708 42579044 -43116710 - MLT1A1 LTR MaLR -2 363 6 415 304 56 78 chr15 42580295 42580601 -43115153 - L2 LINE L2 -31 3241 2943 363 263 140 42 chr15 42580664 42580900 -43114854 - L2 LINE L2 -460 2854 2596 1843 140 10 7 chr15 42581191 42581491 -43114263 - AluJb SINE Alu -11 301 1 1697 171 0 16 chr15 42581502 42581811 -43113943 - AluJb SINE Alu -8 304 1 2137 106 0 17 chr15 42583242 42583544 -43112210 - AluSx SINE Alu -15 297 1 24729 108 26 13 chr15 42583588 42583738 -43112016 + L1MA3 LINE L1 16 163 -7402 2275 87 3 3 chr15 42583738 42584049 -43111705 - AluY SINE Alu 0 311 1 24729 108 26 13 chr15 42584049 42587469 -43108285 + L1MA3 LINE L1 163 3632 -3933 41550 67 8 2 chr15 42587478 42593591 -43102163 + L1PA5 LINE L1 5 6154 0 8314 174 71 38 chr15 42593588 42594061 -43101693 + L1MA3 LINE L1 3621 4077 -3647 * 2251 91 0 3 chr15 42594061 42594357 -43101397 + AluY SINE Alu 1 295 -16 8314 174 71 38 chr15 42594357 42595080 -43100674 + L1MA3 LINE L1 4077 4775 -2949 1761 160 3 0 chr15 42595080 42595367 -43100387 + AluJb SINE Alu 1 288 -24 8314 174 71 38 chr15 42595367 42597664 -43098090 + L1MA3 LINE L1 4775 7415 -309 2109 94 20 0 chr15 42597664 42597956 -43097798 + L1PB1 LINE L1 5844 6148 -3 1958 110 27 34 chr15 42597960 42598288 -43097466 + L1MA3 LINE L1 7399 7724 0 2127 114 0 0 chr15 42598692 42598990 -43096764 - AluSx SINE Alu -14 298 1 207 162 0 0 chr15 42599076 42599113 -43096641 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 182 355 164 27 chr15 42599202 42599312 -43096442 - L2 LINE L2 -4 3268 3144 575 212 106 20 chr15 42600085 42600236 -43095518 - MIR SINE MIR -56 206 43 29 0 0 0 chr15 42600343 42600372 -43095382 + AT_rich Low_complexity Low_complexity 1 29 0 1669 157 20 27 chr15 42600431 42600724 -43095030 + AluJo SINE Alu 1 291 -21 22 35 0 0 chr15 42600758 42600787 -43094967 + AT_rich Low_complexity Low_complexity 1 29 0 377 260 39 1 chr15 42601096 42601209 -43094545 - MIR SINE MIR -57 151 40 431 201 119 124 chr15 42601954 42602148 -43093606 + MIR SINE MIR 13 205 -57 2151 128 133 13 chr15 42602310 42602649 -43093105 + MSTA LTR MaLR 1 392 -36 2062 126 0 10 chr15 42602649 42602959 -43092795 - AluSx SINE Alu -1 311 5 2151 128 133 13 chr15 42602959 42603001 -43092753 + MSTA LTR MaLR 392 428 0 724 224 87 31 chr15 42603260 42603456 -43092298 - MIR SINE MIR -53 209 3 253 283 100 42 chr15 42603509 42603629 -43092125 - L2 LINE L2 -1 3312 3186 329 200 200 0 chr15 42604239 42604334 -43091420 + MIR3 SINE MIR 78 191 -17 433 256 77 19 chr15 42604422 42604578 -43091176 - MIR SINE MIR -52 210 46 366 291 115 6 chr15 42605171 42605336 -43090418 - MIR3 SINE MIR -22 186 4 574 178 0 0 chr15 42605794 42605884 -43089870 + FLAM_A SINE Alu 10 99 -43 432 278 125 17 chr15 42606263 42606439 -43089315 + MIR SINE MIR 61 255 -7 2087 117 0 13 chr15 42607051 42607359 -43088395 - AluSx SINE Alu -8 304 1 190 353 76 50 chr15 42607409 42607503 -43088251 + MIR SINE MIR 7 97 -165 1758 164 7 13 chr15 42607503 42607808 -43087946 - AluJo SINE Alu -9 303 1 190 353 76 50 chr15 42607808 42607951 -43087803 + MIR SINE MIR 97 250 -12 309 292 120 62 chr15 42607972 42608263 -43087491 - L2 LINE L2 -17 3255 2948 2065 129 0 3 chr15 42608370 42608681 -43087073 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 42609299 42609321 -43086433 + AT_rich Low_complexity Low_complexity 1 22 0 190 336 55 39 chr15 42609728 42609856 -43085898 - L2 LINE L2 -249 3023 2894 1358 171 145 111 chr15 42609883 42610194 -43085560 - L1MB8 LINE L1 0 6178 5840 2250 111 0 3 chr15 42610194 42610520 -43085234 - AluSx SINE Alu 0 312 2 1358 171 145 111 chr15 42610520 42610740 -43085014 - L1MB8 LINE L1 -338 5840 5629 204 250 19 0 chr15 42611231 42611283 -43084471 - MIR SINE MIR -95 167 115 195 204 0 0 chr15 42611535 42611579 -43084175 + T-rich Low_complexity Low_complexity 1 44 0 405 325 180 10 chr15 42612560 42612766 -43082988 - MIR SINE MIR -21 241 1 188 215 31 15 chr15 42612773 42612838 -43082916 - L2 LINE L2 -88 3225 3160 190 216 137 0 chr15 42613004 42613055 -43082699 - MIR SINE MIR -103 105 48 432 225 38 2 chr15 42613559 42613708 -43082046 + MER63A DNA MER1_type 1 188 -22 1973 162 3 0 chr15 42613949 42614251 -43081503 - AluJo SINE Alu -9 303 1 2239 102 10 0 chr15 42614322 42614616 -43081138 - AluSx SINE Alu -10 302 6 661 245 67 100 chr15 42614787 42615559 -43080195 + L1MEd LINE L1 761 1558 -4752 2242 132 0 0 chr15 42615559 42615863 -43079891 + AluSx SINE Alu 1 304 -8 661 245 67 100 chr15 42615863 42615886 -43079868 + L1MEd LINE L1 1558 1580 -4730 1896 159 7 7 chr15 42616090 42616391 -43079363 + AluSx SINE Alu 1 301 -11 2467 92 3 0 chr15 42616393 42616699 -43079055 + AluSx SINE Alu 1 307 -5 1920 154 17 3 chr15 42617054 42617352 -43078402 + AluJo SINE Alu 1 302 -10 465 199 49 53 chr15 42617352 42617406 -43078348 - MER5C DNA MER1_type -56 268 215 2376 104 3 0 chr15 42617406 42617715 -43078039 + AluSq SINE Alu 1 310 -3 465 199 49 53 chr15 42617715 42617869 -43077885 - MER5C DNA MER1_type -109 215 1 306 333 40 27 chr15 42617870 42618167 -43077587 + L1ME3A LINE L1 5650 5950 -220 30 0 0 0 chr15 42618388 42618418 -43077336 + AT_rich Low_complexity Low_complexity 1 30 0 2314 113 7 3 chr15 42618454 42618764 -43076990 - AluSp SINE Alu -2 311 1 2143 131 0 7 chr15 42618764 42619061 -43076693 - AluSx SINE Alu -13 299 5 204 205 0 0 chr15 42619524 42619563 -43076191 + CT-rich Low_complexity Low_complexity 4 42 0 1721 214 8 27 chr15 42619644 42619858 -43075896 - MLT1A1 LTR MaLR -2 363 157 1856 169 3 19 chr15 42619858 42620171 -43075583 - AluJb SINE Alu -4 308 1 1721 214 8 27 chr15 42620171 42620326 -43075428 - MLT1A1 LTR MaLR -208 157 1 200 289 26 13 chr15 42620866 42620942 -43074812 - L2 LINE L2 -2 3311 3235 455 286 76 32 chr15 42620996 42621181 -43074573 - MIR SINE MIR -48 214 22 2321 102 7 0 chr15 42621733 42622027 -43073727 - AluSg SINE Alu -14 296 1 203 182 39 65 chr15 42622085 42622162 -43073592 + CT-rich Low_complexity Low_complexity 3 77 0 420 322 40 11 chr15 42622238 42622415 -43073339 + MIR SINE MIR 50 231 -31 575 213 97 13 chr15 42622670 42622825 -43072929 + MER5B DNA MER1_type 8 175 -3 1739 125 29 53 chr15 42622923 42623204 -43072550 + AluJo SINE Alu 24 297 -15 266 278 112 35 chr15 42623245 42623414 -43072340 - L2 LINE L2 -2 3270 3089 673 220 108 46 chr15 42623741 42623982 -43071772 - MIR SINE MIR 0 262 7 236 378 56 14 chr15 42623979 42624122 -43071632 - L2 LINE L2 -731 2583 2435 * 396 0 0 0 chr15 42625226 42625270 -43070484 + (TG)n Simple_repeat Simple_repeat 1 44 0 238 216 0 0 chr15 42625508 42625559 -43070195 - MER115 DNA AcHobo -490 203 153 881 138 0 23 chr15 42626963 42627093 -43068661 + FLAM_C SINE Alu 1 127 -16 204 254 16 139 chr15 42628738 42628860 -43066894 - MIR SINE MIR -65 197 91 247 207 153 51 chr15 42629517 42629667 -43066087 - MIR SINE MIR -36 172 16 296 323 15 38 chr15 42629729 42629862 -43065892 - L2 LINE L2 0 3272 3143 287 235 15 0 chr15 42630401 42630469 -43065285 - HsTC2 DNA Tc2 -3 1895 1827 447 297 56 53 chr15 42630530 42630796 -43064958 + L1MEd LINE L1 357 623 -5496 343 263 105 0 chr15 42630816 42630911 -43064843 - HsTC2 DNA Tc2 -1793 105 1 2273 107 0 29 chr15 42631163 42631473 -43064281 + AluSx SINE Alu 1 301 -11 2042 118 4 7 chr15 42632107 42632387 -43063367 - AluSx SINE Alu -33 279 1 747 280 47 42 chr15 42633354 42633556 -43062198 - L1MC5 LINE L1 -47 7914 7714 2519 105 0 0 chr15 42633556 42633869 -43061885 - AluSq SINE Alu 0 313 1 747 280 47 42 chr15 42633869 42634070 -43061684 - L1MC5 LINE L1 -247 7714 7509 1259 142 5 9 chr15 42635791 42636002 -43059752 - MER2 DNA MER2_type -135 210 1 506 285 196 6 chr15 42636071 42636385 -43059369 - L2 LINE L2 -221 3092 2714 223 270 0 16 chr15 42636544 42636607 -43059147 + CT-rich Low_complexity Low_complexity 4 65 0 1996 164 17 30 chr15 42637580 42637983 -43057771 - L1MB7 LINE L1 -19 6165 5768 477 170 170 22 chr15 42638076 42638211 -43057543 - MIR SINE MIR 0 262 108 197 308 0 0 chr15 42638205 42638257 -43057497 - L2 LINE L2 -213 3059 3008 * 633 227 73 0 chr15 42639517 42639667 -43056087 + MIR SINE MIR 1 161 -101 2455 96 3 0 chr15 42639701 42640013 -43055741 - AluSp SINE Alu 0 313 1 1570 192 0 55 chr15 42640093 42640401 -43055353 + AluJo SINE Alu 1 291 -21 2232 115 0 0 chr15 42641135 42641431 -43054323 - AluSx SINE Alu -16 296 1 1736 180 3 3 chr15 42643230 42643525 -43052229 + AluJb SINE Alu 1 295 -17 1886 169 50 21 chr15 42643580 42643959 -43051795 + MLT1B LTR MaLR 1 390 0 418 271 58 39 chr15 42644776 42644931 -43050823 - MIR3 SINE MIR -39 169 12 370 293 28 0 chr15 42645152 42645258 -43050496 - L2 LINE L2 -12 3301 3193 351 344 81 11 chr15 42646617 42646803 -43048951 - MIR SINE MIR -51 211 13 198 0 0 0 chr15 42646933 42646955 -43048799 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2015 120 14 3 chr15 42646955 42647238 -43048516 - AluSq SINE Alu -27 286 1 2191 95 0 3 chr15 42647669 42648006 -43047748 - AluSc SINE Alu 0 336 1 376 250 66 22 chr15 42648360 42648496 -43047258 + MIR SINE MIR 36 177 -85 1443 191 163 39 chr15 42648649 42649190 -43046564 - LTR48 LTR ERV1 -49 595 31 2225 97 21 0 chr15 42649526 42649815 -43045939 - AluY SINE Alu -16 295 1 2039 155 10 45 chr15 42649945 42650346 -43045408 - MLT1B LTR MaLR 0 390 4 1226 101 0 0 chr15 42650652 42650811 -43044943 + AluSg/x SINE Alu 140 298 -12 2392 119 0 0 chr15 42650979 42651290 -43044464 + AluSq SINE Alu 1 311 -2 222 128 0 0 chr15 42651644 42651683 -43044071 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 913 261 32 84 chr15 42652062 42652442 -43043312 + LTR16B LTR ERVL 105 464 0 679 188 143 13 chr15 42652553 42652707 -43043047 + FAM SINE Alu 1 174 -1 2275 102 3 0 chr15 42652773 42653066 -43042688 + AluSq SINE Alu 1 294 -19 423 0 0 0 chr15 42653484 42653531 -43042223 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 244 9 0 chr15 42653601 42653716 -43042038 + (TG)n Simple_repeat Simple_repeat 2 117 0 216 170 0 0 chr15 42653779 42653832 -43041922 + (TG)n Simple_repeat Simple_repeat 2 54 0 404 272 34 41 chr15 42655212 42655359 -43040395 - L3 LINE CR1 -131 1446 1301 210 291 82 0 chr15 42655490 42655624 -43040130 - L2 LINE L2 -214 3058 2914 757 161 136 7 chr15 42655790 42655945 -43039809 + MER5A DNA MER1_type 1 175 -14 582 193 9 9 chr15 42656093 42656202 -43039552 + MER81 DNA DNA 5 113 -1 689 144 8 8 chr15 42657228 42657346 -43038408 + FRAM SINE Alu 49 166 -10 449 266 79 54 chr15 42657407 42657609 -43038145 + MIR SINE MIR 3 207 -55 442 282 116 28 chr15 42658095 42658311 -43037443 - MIR SINE MIR -23 239 5 351 288 27 0 chr15 42658302 42658413 -43037341 + MIR SINE MIR 27 140 -68 * 407 252 106 8 chr15 42659365 42659488 -43036266 - MIR SINE MIR -108 154 20 1785 149 7 28 chr15 42660032 42660316 -43035438 + AluSx SINE Alu 6 281 -31 220 36 0 0 chr15 42660316 42660344 -43035410 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1688 225 113 10 chr15 42661039 42661559 -43034195 - L1MC4a LINE L1 -1896 5912 5339 374 324 62 17 chr15 42661602 42661781 -43033973 + L1M4 LINE L1 5091 5277 -869 426 258 89 0 chr15 42661856 42661980 -43033774 - MIR SINE MIR -67 195 61 218 319 75 0 chr15 42662004 42662098 -43033656 + MIR SINE MIR 44 144 -118 1660 184 15 12 chr15 42663416 42663753 -43032001 + L1MB8 LINE L1 5840 6177 -1 2545 70 0 6 chr15 42663764 42664077 -43031677 + AluY SINE Alu 1 311 0 333 54 0 0 chr15 42664421 42664477 -43031277 + L1MB4 LINE L1 6125 6180 0 289 311 101 0 chr15 42664547 42664666 -43031088 - MIR SINE MIR 0 262 132 1123 198 127 19 chr15 42664909 42665177 -43030577 + AluSg SINE Alu 6 302 -8 518 335 39 26 chr15 42666629 42666862 -43028892 + MIR SINE MIR 21 256 -6 480 261 128 20 chr15 42667417 42667620 -43028134 - L1ME4a LINE L1 -2 6119 5895 1771 80 0 40 chr15 42667629 42667880 -43027874 - AluSg/x SINE Alu 0 310 70 318 106 0 0 chr15 42668416 42668463 -43027291 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 2673 182 161 11 chr15 42668488 42669103 -43026651 + MER39 LTR ERV1 1 707 0 359 321 26 5 chr15 42669200 42669321 -43026433 - MIR SINE MIR -58 150 33 772 100 25 8 chr15 42669346 42669466 -43026288 - MER85 DNA T2_type -4 135 14 2015 144 21 0 chr15 42669468 42669759 -43025995 + AluSx SINE Alu 1 297 -15 465 222 0 0 chr15 42670029 42670144 -43025610 + FRAM SINE Alu 66 180 0 305 297 11 11 chr15 42670949 42671040 -43024714 + MIR SINE MIR 30 120 -88 183 238 95 0 chr15 42671017 42671059 -43024695 - L2 LINE L2 -17 3296 3251 * 2307 104 7 0 chr15 42671071 42671368 -43024386 + AluSx SINE Alu 1 299 -13 272 296 14 0 chr15 42671725 42671796 -43023958 + CT-rich Low_complexity Low_complexity 1 72 0 237 140 20 170 chr15 42672102 42672202 -43023552 - MIR SINE MIR -64 198 114 2503 87 0 0 chr15 42672459 42672768 -43022986 + AluSx SINE Alu 4 312 0 403 223 209 14 chr15 42673213 42673433 -43022321 + L1ME4a LINE L1 5848 6110 -11 329 188 18 87 chr15 42673433 42673591 -43022163 - MLT1H LTR MaLR -2 577 425 347 211 26 0 chr15 42673788 42673864 -43021890 - MLT1I LTR MaLR -264 145 68 1758 157 7 4 chr15 42674072 42674388 -43021366 - AluJb SINE Alu 0 317 1 626 268 48 61 chr15 42674632 42674927 -43020827 - L2 LINE L2 -2 3311 3021 240 316 53 15 chr15 42675523 42675618 -43020136 - L2 LINE L2 -213 3059 2956 1989 163 3 0 chr15 42675618 42675918 -43019836 + AluJo SINE Alu 8 308 -4 240 316 53 15 chr15 42675918 42675955 -43019799 - L2 LINE L2 -316 2956 2922 2160 103 0 3 chr15 42676301 42676607 -43019147 + AluSx SINE Alu 1 305 0 2336 103 10 0 chr15 42677199 42677499 -43018255 + AluSx SINE Alu 1 303 -9 788 260 61 41 chr15 42677852 42678194 -43017560 - LTR16B LTR ERVL 0 464 116 274 291 169 54 chr15 42678197 42678309 -43017445 + MIR SINE MIR 88 222 -40 2381 75 14 7 chr15 42678309 42678602 -43017152 + AluY SINE Alu 5 299 -12 274 291 169 54 chr15 42678602 42678637 -43017117 + MIR SINE MIR 222 252 -10 2205 130 0 0 chr15 42678920 42679219 -43016535 - AluSx SINE Alu -13 299 1 220 287 103 49 chr15 42679433 42679656 -43016098 + L2 LINE L2 2820 3054 -218 393 182 52 86 chr15 42679694 42679810 -43015944 + MIR SINE MIR 102 212 -50 308 248 159 28 chr15 42679932 42680077 -43015677 + MIR3 SINE MIR 20 183 -25 619 269 50 22 chr15 42680899 42681081 -43014673 - MIR SINE MIR -29 233 47 246 32 0 0 chr15 42681169 42681200 -43014554 + (TG)n Simple_repeat Simple_repeat 2 32 0 1409 187 8 12 chr15 42681200 42681446 -43014308 - AluJo SINE Alu -26 286 42 370 301 80 0 chr15 42682089 42682202 -43013552 + MIR SINE MIR 90 211 -51 313 294 20 20 chr15 42682618 42682720 -43013034 + MIR3 SINE MIR 3 104 -104 2830 147 25 39 chr15 42682805 42682878 -43012876 + L1MB3 LINE L1 5585 5658 -525 1624 175 11 18 chr15 42682878 42683164 -43012590 + AluJb SINE Alu 1 284 -28 2830 147 25 39 chr15 42683164 42683656 -43012098 + L1MB3 LINE L1 5658 6142 -41 1046 135 0 0 chr15 42683656 42683804 -43011950 + FRAM SINE Alu 29 176 0 2145 64 31 80 chr15 42683865 42684192 -43011562 + AluY SINE Alu 1 311 0 528 289 22 0 chr15 42685889 42686024 -43009730 - MIR SINE MIR -74 188 51 1256 120 245 94 chr15 42686160 42686511 -43009243 - MER4A LTR ERV1 0 664 261 654 101 0 10 chr15 42686511 42686610 -43009144 - MER4A LTR ERV1 -566 98 1 328 280 75 0 chr15 42687077 42687184 -43008570 - L2 LINE L2 -31 3241 3127 476 273 8 0 chr15 42687576 42687697 -43008057 - MIR3 SINE MIR -24 184 63 576 282 169 43 chr15 42687760 42688203 -43007551 - L2 LINE L2 -5 3308 2810 499 277 114 12 chr15 42688227 42688393 -43007361 + MIR SINE MIR 10 192 -70 1198 214 67 20 chr15 42688688 42689033 -43006721 + L1ME3A LINE L1 5801 6161 -9 432 55 0 0 chr15 42689033 42689064 -43006690 + (CA)n Simple_repeat Simple_repeat 1 86 0 432 55 0 0 chr15 42689064 42689119 -43006635 + (CA)n Simple_repeat Simple_repeat 2 56 0 1845 99 0 0 chr15 42689127 42689360 -43006394 - AluSc SINE Alu -26 283 51 327 264 214 7 chr15 42689733 42689873 -43005881 - MIR3 SINE MIR -17 191 23 2336 105 0 0 chr15 42690210 42690505 -43005249 - AluSx SINE Alu -17 295 1 557 319 11 22 chr15 42690532 42690714 -43005040 - MIR3 SINE MIR -4 204 25 2135 79 0 34 chr15 42691470 42691761 -43003993 - AluY SINE Alu -29 282 2 353 123 0 4 chr15 42691955 42692018 -43003736 + Alu SINE Alu 1 55 -244 219 114 0 0 chr15 42792191 42792203 -42903551 + (TG)n Simple_repeat Simple_repeat 1 47 0 219 114 0 0 chr15 42792203 42792238 -42903516 + (TG)n Simple_repeat Simple_repeat 2 36 0 2042 134 0 16 chr15 42792533 42792838 -42902916 + AluSx SINE Alu 1 300 -12 1862 189 51 127 chr15 42793198 42794289 -42901465 + L1PA11 LINE L1 5117 6067 -107 3241 142 51 89 chr15 42793503 42793958 -42901796 + L1PB4 LINE L1 5359 5773 -383 290 60 0 60 chr15 42793958 42794008 -42901746 + (CA)n Simple_repeat Simple_repeat 2 48 0 3241 142 51 89 chr15 42794008 42794340 -42901414 + L1PB4 LINE L1 5773 6116 -40 221 57 29 0 chr15 42794373 42794408 -42901346 + (TTTAA)n Simple_repeat Simple_repeat 3 38 0 446 145 0 0 chr15 42794408 42794470 -42901284 - AluSq SINE Alu -26 287 226 1505 91 0 0 chr15 42794470 42794657 -42901097 - AluSq SINE Alu -126 187 1 2248 102 0 3 chr15 42794950 42795253 -42900501 + AluSq SINE Alu 3 304 0 2346 65 0 39 chr15 42795560 42795870 -42899884 + AluY SINE Alu 1 298 -13 1979 109 3 21 chr15 42796286 42796593 -42899161 + AluSc SINE Alu 1 302 0 337 301 70 10 chr15 42796984 42797251 -42898503 + L1ME LINE L1 5374 5662 -459 1685 148 82 3 chr15 42797277 42797568 -42898186 + MER1B DNA MER1_type 24 337 -2 21 57 0 0 chr15 42797578 42797613 -42898141 + AT_rich Low_complexity Low_complexity 1 35 0 2239 99 0 3 chr15 42797722 42798015 -42897739 - AluSx SINE Alu -20 292 1 2499 78 0 3 chr15 42798270 42798576 -42897178 + AluSq SINE Alu 1 305 -8 964 86 0 0 chr15 42798590 42798706 -42897048 + AluY SINE Alu 1 116 -195 796 80 104 0 chr15 42798867 42798992 -42896762 - MER85 DNA T2_type -1 138 1 229 386 41 23 chr15 42799364 42799584 -42896170 + L2 LINE L2 2658 2881 -433 350 339 131 35 chr15 42799611 42799765 -42895989 + L2 LINE L2 2928 3066 -206 1885 179 0 0 chr15 42799765 42800061 -42895693 - AluJb SINE Alu -16 296 1 350 339 131 35 chr15 42800061 42800219 -42895535 + L2 LINE L2 3066 3270 -2 2333 96 3 0 chr15 42800223 42800526 -42895228 + AluSq SINE Alu 1 304 -9 216 0 0 0 chr15 42800578 42800602 -42895152 + (T)n Simple_repeat Simple_repeat 1 24 0 880 310 24 38 chr15 42800726 42801065 -42894689 - L2 LINE L2 -69 3244 2911 1572 164 67 27 chr15 42801067 42801366 -42894388 + AluJo SINE Alu 1 311 -1 1929 122 7 33 chr15 42802391 42802695 -42893059 + AluSx SINE Alu 1 296 -16 22 25 0 25 chr15 42802930 42802948 -42892806 + AT_rich Low_complexity Low_complexity 1 18 -21 2508 50 0 13 chr15 42802948 42803246 -42892508 + AluY SINE Alu 1 294 -17 22 25 0 25 chr15 42803246 42803267 -42892487 + AT_rich Low_complexity Low_complexity 18 39 0 402 154 26 13 chr15 42803599 42803677 -42892077 + MER5A DNA MER1_type 27 105 -84 2176 117 13 3 chr15 42805246 42805553 -42890201 + AluSx SINE Alu 1 310 -2 2225 88 7 3 chr15 42805732 42806039 -42889715 - AluSq SINE Alu 0 308 1 995 199 0 6 chr15 42806721 42806897 -42888857 + FAM SINE Alu 1 175 0 53 0 0 0 chr15 42806897 42806950 -42888804 + AT_rich Low_complexity Low_complexity 1 53 0 1646 171 10 26 chr15 42806971 42807108 -42888646 + AluJb SINE Alu 1 139 -173 2263 110 7 0 chr15 42807108 42807408 -42888346 + AluSq SINE Alu 1 302 -11 1646 171 10 26 chr15 42807408 42807574 -42888180 + AluJb SINE Alu 139 299 -13 2233 97 26 10 chr15 42807746 42808054 -42887700 + AluSq SINE Alu 1 313 0 1449 189 82 10 chr15 42809074 42809365 -42886389 + AluJo SINE Alu 1 312 0 5267 180 21 22 chr15 42809368 42810977 -42884777 + L1MC2 LINE L1 4735 6335 -9 874 155 0 0 chr15 42811072 42811201 -42884553 + AluSq/x SINE Alu 1 129 -183 2493 70 0 0 chr15 42811324 42811626 -42884128 - AluY SINE Alu -9 302 1 876 143 0 0 chr15 42812009 42812135 -42883619 - FLAM_C SINE Alu -7 126 1 185 308 58 50 chr15 42812310 42812351 -42883403 + L2 LINE L2 2741 2780 -534 2510 57 0 3 chr15 42812351 42812647 -42883107 + AluY SINE Alu 1 295 -16 185 308 58 50 chr15 42812647 42812725 -42883029 + L2 LINE L2 2780 2861 -453 258 321 171 54 chr15 42812781 42813021 -42882733 + L2 LINE L2 2957 3224 -48 387 0 0 0 chr15 42813047 42813090 -42882664 + (CA)n Simple_repeat Simple_repeat 2 44 0 1524 159 42 46 chr15 42813565 42813848 -42881906 + AluJo SINE Alu 1 282 -30 1745 181 28 3 chr15 42814173 42814460 -42881294 + AluJo SINE Alu 3 296 -16 2417 91 0 0 chr15 42814462 42814770 -42880984 + AluSc SINE Alu 1 308 -1 2144 111 34 0 chr15 42814786 42815083 -42880671 - AluSx SINE Alu -5 307 1 944 211 0 28 chr15 42815244 42815424 -42880330 + FAM SINE Alu 1 175 0 981 178 0 23 chr15 42815464 42815614 -42880140 + AluSg/x SINE Alu 128 275 -35 8887 68 7 0 chr15 42815614 42817492 -42878262 + L1PA7 LINE L1 4253 6146 -8 981 178 0 23 chr15 42817492 42817515 -42878239 + AluSg/x SINE Alu 275 297 -13 389 339 0 8 chr15 42817626 42817744 -42878010 - L2 LINE L2 -12 3260 3144 923 220 0 11 chr15 42817841 42818018 -42877736 - FAM SINE Alu 0 175 1 3768 159 44 33 chr15 42818098 42818829 -42876925 - L1MA7 LINE L1 -12 6279 5541 536 183 25 1 chr15 42818830 42818950 -42876804 + L1M3 LINE L1 5456 5581 -590 266 159 14 43 chr15 42819679 42819748 -42876006 - L1MB8 LINE L1 0 6178 6112 699 269 0 12 chr15 42819751 42819918 -42875836 - AluJo SINE Alu -1 311 147 333 0 0 0 chr15 42819940 42819977 -42875777 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 154 3 0 chr15 42819992 42820303 -42875451 + AluSx SINE Alu 1 312 0 1893 195 91 25 chr15 42820348 42820779 -42874975 + LTR2B LTR ERV1 32 490 0 2274 90 3 0 chr15 42820835 42821125 -42874629 - AluSx SINE Alu -21 291 1 347 253 72 18 chr15 42821134 42821300 -42874454 - L1M4 LINE L1 -2122 4024 3850 890 176 13 13 chr15 42821364 42821523 -42874231 - AluJo SINE Alu -142 170 12 41 36 0 0 chr15 42821865 42821920 -42873834 + AT_rich Low_complexity Low_complexity 1 55 0 222 37 0 0 chr15 42822270 42822297 -42873457 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 324 146 0 0 chr15 42822299 42822347 -42873407 - AluJb SINE Alu -21 281 234 2329 111 0 0 chr15 42822347 42822644 -42873110 - AluSx SINE Alu -15 297 1 1482 143 8 13 chr15 42822649 42822887 -42872867 - AluJb SINE Alu -75 237 1 1689 108 4 24 chr15 42823279 42823529 -42872225 - AluSx SINE Alu -12 300 56 1517 150 124 7 chr15 42823651 42823925 -42871829 - AluJb SINE Alu -6 306 1 459 258 48 87 chr15 42824039 42824130 -42871624 - Charlie8 DNA MER1_type -64 277 184 2351 115 0 0 chr15 42824130 42824442 -42871312 + AluSx SINE Alu 1 312 0 459 258 48 87 chr15 42824442 42824579 -42871175 - Charlie8 DNA MER1_type -157 184 58 1781 181 0 25 chr15 42824977 42825297 -42870457 - AluJo SINE Alu 0 312 1 769 171 0 0 chr15 42826124 42826235 -42869519 - FLAM_C SINE Alu -31 112 2 1663 134 45 62 chr15 42826266 42826558 -42869196 + AluJb SINE Alu 1 287 -25 1629 162 40 26 chr15 42826658 42826960 -42868794 - AluJo SINE Alu -6 306 1 2373 91 3 0 chr15 42827100 42827398 -42868356 - AluSp SINE Alu -14 299 1 441 219 47 39 chr15 42827659 42827787 -42867967 - MIR SINE MIR -15 247 119 1992 175 40 37 chr15 42827949 42828497 -42867257 + MLT2A2 LTR ERVL 1 554 0 509 283 103 13 chr15 42829400 42829577 -42866177 - MIR SINE MIR 0 262 60 183 100 0 0 chr15 42829577 42829607 -42866147 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 509 283 103 13 chr15 42829607 42829647 -42866107 - MIR SINE MIR -202 60 25 1798 188 0 3 chr15 42829769 42830057 -42865697 - AluSx SINE Alu -25 287 1 2144 119 3 0 chr15 42830093 42830387 -42865367 + AluSx SINE Alu 1 295 -17 43892 30 23 1 chr15 42830391 42836427 -42859327 + L1PA2 LINE L1 1 6168 0 22 88 0 0 chr15 42836445 42836502 -42859252 + AT_rich Low_complexity Low_complexity 1 57 0 686 200 14 0 chr15 42836555 42836700 -42859054 + L1PBa LINE L1 2087 2233 -4630 2292 117 0 0 chr15 42836701 42837009 -42858745 + AluSq SINE Alu 1 308 -5 2268 194 123 38 chr15 42837013 42837044 -42858710 + L1PBa LINE L1 2632 2659 -4203 1027 120 0 0 chr15 42837044 42837177 -42858577 + FLAM_C SINE Alu 1 133 0 2268 194 123 38 chr15 42837177 42837875 -42857879 + L1PBa LINE L1 2659 3428 -3434 1134 118 0 30 chr15 42837875 42838044 -42857710 - AluSx SINE Alu -148 164 1 3592 141 2 38 chr15 42838059 42838606 -42857148 - MER1A DNA MER1_type 0 527 1 326 236 11 56 chr15 42839659 42839748 -42856006 + L2 LINE L2 3188 3272 0 203 247 13 39 chr15 42839750 42839827 -42855927 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 21 0 0 0 chr15 42840181 42840202 -42855552 + AT_rich Low_complexity Low_complexity 1 21 0 736 206 0 8 chr15 42840204 42840335 -42855419 + FLAM_A SINE Alu 3 132 -1 2322 107 0 0 chr15 42840672 42840980 -42854774 + AluSx SINE Alu 1 308 -4 1458 182 64 7 chr15 42841077 42841357 -42854397 - AluJo SINE Alu -16 296 1 3132 186 94 9 chr15 42841360 42842043 -42853711 - L1MB4 LINE L1 0 6180 5440 2306 106 3 3 chr15 42842144 42842455 -42853299 + AluSp SINE Alu 1 311 -2 2095 124 3 0 chr15 42842462 42842753 -42853001 + AluSq SINE Alu 1 292 -21 864 219 0 83 chr15 42842885 42843020 -42852734 + MER5A DNA MER1_type 1 115 -74 2151 102 0 0 chr15 42843020 42843326 -42852428 - AluSx SINE Alu 0 312 14 864 219 0 83 chr15 42843326 42843395 -42852359 + MER5A DNA MER1_type 115 188 -1 273 293 60 35 chr15 42843662 42843894 -42851860 - L1M4 LINE L1 -3164 2982 2745 251 314 57 0 chr15 42844124 42844264 -42851490 - L1M4 LINE L1 -3605 2541 2394 1705 169 0 14 chr15 42844410 42844689 -42851065 + AluJb SINE Alu 13 287 -25 1028 106 0 68 chr15 42844689 42844716 -42851038 - AluSc SINE Alu -159 150 123 2944 9 0 0 chr15 42844716 42845031 -42850723 - AluYb8 SINE Alu -3 315 1 1028 106 0 68 chr15 42845031 42845164 -42850590 - AluSc SINE Alu -186 123 1 1458 155 13 9 chr15 42845221 42845447 -42850307 - AluJo SINE Alu -31 281 55 487 249 67 12 chr15 42845907 42846072 -42849682 + MIR SINE MIR 29 202 -60 23 0 0 0 chr15 42846439 42846462 -42849292 + AT_rich Low_complexity Low_complexity 1 23 0 1022 195 5 41 chr15 42846534 42846729 -42849025 - MER5A DNA MER1_type 0 189 2 1500 97 5 0 chr15 42846739 42846934 -42848820 + AluSp SINE Alu 83 278 -35 252 0 0 0 chr15 42846935 42846963 -42848791 + (CA)n Simple_repeat Simple_repeat 2 29 0 461 191 224 34 chr15 42847137 42847284 -42848470 - MER5B DNA MER1_type -2 176 2 530 300 32 8 chr15 42848434 42848602 -42847152 + MIR3 SINE MIR 32 205 -3 2093 101 32 0 chr15 42849528 42849806 -42845948 - AluSc SINE Alu -21 288 2 614 200 95 0 chr15 42849838 42849943 -42845811 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 42849944 42849980 -42845774 + AT_rich Low_complexity Low_complexity 1 36 0 2564 187 45 66 chr15 42849980 42850149 -42845605 + L1MC2 LINE L1 4921 5092 -1252 2126 123 0 0 chr15 42850149 42850484 -42845270 - AluSq SINE Alu 0 335 1 2564 187 45 66 chr15 42850484 42851197 -42844557 + L1MC2 LINE L1 5092 5818 -526 912 139 8 0 chr15 42851197 42851326 -42844428 + FLAM_A SINE Alu 2 131 -2 2564 187 45 66 chr15 42851326 42851452 -42844302 + L1MC2 LINE L1 5818 5945 -399 2181 102 3 3 chr15 42851452 42851745 -42844009 + AluSc SINE Alu 1 293 -16 2564 187 45 66 chr15 42851745 42852208 -42843546 + L1MC2 LINE L1 5945 6320 -24 2319 88 0 16 chr15 42852576 42852882 -42842872 + AluSq SINE Alu 1 301 -12 857 156 0 22 chr15 42853521 42853656 -42842098 + FLAM_A SINE Alu 2 133 0 21 0 0 0 chr15 42853656 42853677 -42842077 + AT_rich Low_complexity Low_complexity 1 21 0 2429 60 0 26 chr15 42853938 42854240 -42841514 + AluY SINE Alu 1 294 -17 1276 138 32 0 chr15 42854885 42855103 -42840651 + AluSg/x SINE Alu 88 312 0 1638 175 42 7 chr15 42855238 42855523 -42840231 - AluJo SINE Alu -17 295 1 1812 145 199 100 chr15 42855644 42855697 -42840057 + MLT2B3 LTR ERVL 1 47 -507 2290 82 7 0 chr15 42855697 42855988 -42839766 + AluSp SINE Alu 21 313 0 1812 145 199 100 chr15 42855988 42856432 -42839322 + MLT2B3 LTR ERVL 47 547 -7 1787 169 0 7 chr15 42856657 42856952 -42838802 - AluJb SINE Alu -15 297 5 327 25 0 0 chr15 42856953 42856993 -42838761 + (TG)n Simple_repeat Simple_repeat 2 41 0 516 97 0 0 chr15 42857000 42857072 -42838682 - AluJ/FLAM SINE Alu -239 73 2 1673 65 5 9 chr15 42857515 42857731 -42838023 + AluY SINE Alu 83 297 -14 26 0 0 0 chr15 42857731 42857757 -42837997 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 42858629 42858650 -42837104 + AT_rich Low_complexity Low_complexity 1 21 0 2072 93 14 7 chr15 42858660 42858940 -42836814 - AluSx SINE Alu -28 284 3 253 338 89 9 chr15 42859034 42859166 -42836588 + MIR SINE MIR 4 142 -66 806 173 0 0 chr15 42859693 42859826 -42835928 + FLAM_C SINE Alu 11 143 0 2250 89 31 0 chr15 42860042 42860335 -42835419 - AluSx SINE Alu -10 302 1 262 99 50 99 chr15 42860345 42860486 -42835268 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 1978 151 3 0 chr15 42860513 42860817 -42834937 + AluSx SINE Alu 1 305 -7 2455 66 0 13 chr15 42860942 42861243 -42834511 + AluSx SINE Alu 1 297 -15 2329 87 0 3 chr15 42861489 42861788 -42833966 - AluSc SINE Alu -11 298 1 2266 111 3 3 chr15 42862022 42862328 -42833426 + AluSx SINE Alu 1 306 -6 2094 112 14 10 chr15 42862328 42862457 -42833297 + AluSx SINE Alu 1 128 -184 216 0 0 0 chr15 42862457 42862481 -42833273 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2094 112 14 10 chr15 42862481 42862645 -42833109 + AluSx SINE Alu 128 296 -16 852 40 20 0 chr15 42862839 42862938 -42832816 - AluSq/x SINE Alu -184 129 29 1676 196 7 0 chr15 42862955 42863246 -42832508 - AluJb SINE Alu -17 295 3 2350 66 13 26 chr15 42863485 42863790 -42831964 - AluY SINE Alu -10 301 1 323 187 55 0 chr15 42863846 42863937 -42831817 - L1ME4a LINE L1 -27 6094 5999 315 241 153 44 chr15 42863997 42864134 -42831620 - L1ME4a LINE L1 -66 6055 5904 222 250 54 18 chr15 42864136 42864192 -42831562 + L2 LINE L2 3249 3306 -7 25 0 0 0 chr15 42864505 42864530 -42831224 + AT_rich Low_complexity Low_complexity 1 25 0 2533 66 0 0 chr15 42864657 42864962 -42830792 + AluY SINE Alu 1 305 -6 1640 187 0 7 chr15 42865182 42865476 -42830278 - AluJo SINE Alu -17 295 4 1173 141 0 22 chr15 42866073 42866241 -42829513 - AluSc SINE Alu -10 299 134 2158 120 3 3 chr15 42866241 42866542 -42829212 - AluSx SINE Alu -11 301 1 1173 141 0 22 chr15 42866542 42866557 -42829197 - AluSc SINE Alu -175 134 120 1596 231 143 25 chr15 42866559 42866600 -42829154 - L1ME4a LINE L1 -246 5924 5889 2423 99 0 6 chr15 42866600 42866912 -42828842 - AluSx SINE Alu -2 310 1 1596 231 143 25 chr15 42866912 42867395 -42828359 - L1ME4a LINE L1 -281 5889 5338 377 161 126 46 chr15 42867398 42867485 -42828269 - AluSc SINE Alu -1 298 205 2348 91 0 3 chr15 42868225 42868534 -42827220 - AluY SINE Alu -3 308 1 967 157 0 164 chr15 42868619 42868893 -42826861 + AluJo SINE Alu 1 229 -83 2419 90 0 7 chr15 42869273 42869583 -42826171 - AluSx SINE Alu -2 310 3 1871 104 50 29 chr15 42869835 42870134 -42825620 - AluSx SINE Alu 0 305 1 857 211 6 0 chr15 42870162 42870337 -42825417 + AluJb SINE Alu 137 312 0 775 192 0 0 chr15 42870492 42870617 -42825137 + FLAM_C SINE Alu 1 125 -18 1178 160 0 6 chr15 42870624 42870805 -42824949 - AluJo SINE Alu -132 180 1 231 192 0 90 chr15 42870903 42870981 -42824773 - MARNA DNA Mariner -496 90 20 230 0 33 0 chr15 42871281 42871311 -42824443 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1810 131 0 45 chr15 42871315 42871467 -42824287 - AluSx SINE Alu -35 277 143 2276 100 0 7 chr15 42871467 42871766 -42823988 - AluY SINE Alu -14 297 1 1810 131 0 45 chr15 42871766 42871903 -42823851 - AluSx SINE Alu -169 143 1 1088 195 75 0 chr15 42871956 42872223 -42823531 + L1MD3 LINE L1 6953 7239 -756 * 1250 164 52 37 chr15 42872221 42872517 -42823237 + L1MD3 LINE L1 6157 6303 -41 2305 78 10 0 chr15 42872557 42872851 -42822903 - AluSp SINE Alu -16 297 1 2269 113 0 7 chr15 42872855 42873157 -42822597 - AluSq SINE Alu -13 300 1 29 0 0 0 chr15 42873167 42873196 -42822558 + AT_rich Low_complexity Low_complexity 1 29 0 2122 95 0 11 chr15 42873205 42873489 -42822265 - AluY SINE Alu -26 285 5 2129 91 0 24 chr15 42873492 42873789 -42821965 - AluSc SINE Alu -18 291 2 2266 96 7 0 chr15 42874241 42874534 -42821220 + AluSp SINE Alu 1 295 -18 2092 115 47 0 chr15 42874646 42874942 -42820812 - AluSx SINE Alu -2 310 1 1396 172 116 0 chr15 42875050 42875317 -42820437 - AluJb SINE Alu -14 298 1 2503 84 0 0 chr15 42875475 42875785 -42819969 - AluY SINE Alu -1 310 1 391 273 124 12 chr15 42875791 42875952 -42819802 + MIR SINE MIR 70 248 -14 1525 210 14 4 chr15 42876049 42876330 -42819424 + AluJo SINE Alu 6 289 -23 204 269 39 0 chr15 42876455 42876507 -42819247 - MIR SINE MIR -12 250 197 2301 79 3 3 chr15 42877717 42878008 -42817746 + AluY SINE Alu 1 291 -20 1711 187 7 0 chr15 42878148 42878442 -42817312 + AluJb SINE Alu 3 298 -14 505 81 0 0 chr15 42878506 42878568 -42817186 - Alu SINE Alu -249 63 2 2400 71 7 7 chr15 42878581 42878889 -42816865 - AluY SINE Alu -3 308 1 326 291 78 0 chr15 42879011 42879114 -42816640 + MIR3 SINE MIR 75 185 -23 1906 114 77 0 chr15 42879262 42879534 -42816220 + AluSg1 SINE Alu 1 293 -16 2316 103 3 0 chr15 42880356 42880656 -42815098 - AluSq SINE Alu -11 302 2 180 179 0 0 chr15 42880748 42880787 -42814967 + (TATG)n Simple_repeat Simple_repeat 4 42 0 414 269 52 43 chr15 42881070 42881438 -42814316 + L1ME LINE L1 5192 5562 -559 2372 139 6 8 chr15 42881461 42881820 -42813934 + L1MC1 LINE L1 5968 6325 -8 952 113 8 0 chr15 42881821 42881945 -42813809 + FLAM_C SINE Alu 1 125 -8 2455 61 0 7 chr15 42882017 42882311 -42813443 - AluY SINE Alu -18 293 2 1531 170 83 7 chr15 42883532 42883809 -42811945 - AluJo SINE Alu -14 298 1 2085 90 18 7 chr15 42883905 42884218 -42811536 - AluSc SINE Alu 0 316 1 2140 94 0 4 chr15 42884839 42885116 -42810638 - AluY SINE Alu -2 309 34 1828 134 0 4 chr15 42885177 42885439 -42810315 + AluJo SINE Alu 34 294 -18 303 277 24 0 chr15 42885573 42885656 -42810098 - L2 LINE L2 -298 2974 2890 1763 208 80 25 chr15 42885684 42886122 -42809632 - MLT1C LTR MaLR 0 467 6 241 355 104 56 chr15 42886136 42886387 -42809367 - L2 LINE L2 -496 2818 2556 1002 166 0 43 chr15 42886410 42886573 -42809181 + FRAM SINE Alu 1 156 -10 818 163 0 0 chr15 42886774 42886897 -42808857 + FLAM_C SINE Alu 2 124 -9 253 353 84 0 chr15 42887030 42887149 -42808605 + L2 LINE L2 3136 3264 -8 305 320 10 10 chr15 42887189 42887292 -42808462 - MIR3 SINE MIR -7 201 99 1679 196 0 13 chr15 42887343 42887644 -42808110 - AluJb SINE Alu -15 297 1 668 192 8 40 chr15 42887654 42887779 -42807975 - FLAM_A SINE Alu -12 121 1 27 0 0 0 chr15 42887779 42887806 -42807948 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr15 42887837 42887859 -42807895 + AT_rich Low_complexity Low_complexity 1 22 0 2090 111 18 0 chr15 42888441 42888744 -42807010 - AluSq SINE Alu 0 308 1 2440 75 3 0 chr15 42889680 42889988 -42805766 - AluY SINE Alu 0 311 3 270 186 153 59 chr15 42890053 42890146 -42805608 - L1ME4a LINE L1 -37 6084 6001 2258 113 0 0 chr15 42890146 42890446 -42805308 - AluSg SINE Alu -10 300 1 2307 101 3 0 chr15 42890446 42890753 -42805001 - AluSp SINE Alu -4 309 1 270 186 153 59 chr15 42890753 42890776 -42804978 - L1ME4a LINE L1 -119 6002 5956 2181 103 0 31 chr15 42890846 42891165 -42804589 - AluY SINE Alu -2 309 1 484 171 0 105 chr15 42891287 42891361 -42804393 + MER7A DNA MER2_type 5 64 -2974 1991 98 98 0 chr15 42891361 42891627 -42804127 + AluSg SINE Alu 1 292 -18 484 171 0 105 chr15 42891627 42891657 -42804097 + MER7A DNA MER2_type 64 96 -250 1614 136 4 0 chr15 42891785 42892013 -42803741 - AluSx SINE Alu -83 229 1 1382 138 73 54 chr15 42892013 42892140 -42803614 + MER7A DNA MER2_type 73 196 -2833 1951 121 57 4 chr15 42892140 42892420 -42803334 + AluSx SINE Alu 2 296 -16 1382 138 73 54 chr15 42892420 42892552 -42803202 + MER7A DNA MER2_type 196 337 0 356 319 116 7 chr15 42892555 42892703 -42803051 - MIR3 SINE MIR -67 141 7 2494 66 13 0 chr15 42893564 42893865 -42801889 + AluSc SINE Alu 1 305 -4 29 28 0 0 chr15 42893905 42893941 -42801813 + AT_rich Low_complexity Low_complexity 1 36 0 2203 116 3 3 chr15 42895151 42895454 -42800300 - AluSx SINE Alu -9 303 1 630 154 111 17 chr15 42896024 42896141 -42799613 - FLAM_C SINE Alu -5 128 1 2094 122 0 3 chr15 42896178 42896474 -42799280 + AluY SINE Alu 1 295 -16 255 175 0 0 chr15 42896706 42896763 -42798991 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2409 103 0 0 chr15 42896795 42897097 -42798657 + AluSx SINE Alu 1 302 -10 2078 122 7 7 chr15 42897100 42897396 -42798358 + AluY SINE Alu 5 300 -11 1844 154 27 3 chr15 42897761 42898053 -42797701 - AluSx SINE Alu -13 299 1 2200 122 0 10 chr15 42898985 42899289 -42796465 - AluSx SINE Alu -11 301 1 2426 95 0 6 chr15 42899410 42899725 -42796029 + AluSq SINE Alu 1 313 0 560 203 101 22 chr15 42899853 42899991 -42795763 + MER103 DNA DNA 15 163 -3 2289 97 0 31 chr15 42901799 42902120 -42793634 + AluSx SINE Alu 1 311 -1 1136 128 12 0 chr15 42902122 42902286 -42793468 + AluSg/x SINE Alu 128 293 -19 180 0 0 0 chr15 42902481 42902501 -42793253 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1595 181 14 4 chr15 42902501 42902782 -42792972 - AluJb SINE Alu -28 284 1 2246 112 3 0 chr15 42902828 42903124 -42792630 - AluSp SINE Alu -16 297 1 1710 181 14 0 chr15 42903391 42903679 -42792075 + AluJo SINE Alu 3 294 -18 189 0 0 0 chr15 42904144 42904165 -42791589 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1601 95 102 91 chr15 42904168 42904453 -42791301 - AluSx SINE Alu -24 288 1 2599 47 0 0 chr15 42904777 42905076 -42790678 + AluY SINE Alu 1 299 -12 812 100 125 8 chr15 42905088 42905208 -42790546 + AluJo SINE Alu 2 135 -177 1945 146 7 17 chr15 42905208 42905510 -42790244 + AluJo SINE Alu 1 299 -13 2101 103 7 39 chr15 42906079 42906389 -42789365 - AluSx SINE Alu -12 300 1 197 167 119 0 chr15 42906634 42906676 -42789078 - L3b LINE CR1 -246 1337 1291 2324 109 0 0 chr15 42906909 42907221 -42788533 - AluSx SINE Alu 0 312 1 2234 72 0 42 chr15 42907375 42907549 -42788205 - AluSc SINE Alu -14 295 138 2136 84 3 56 chr15 42907549 42907872 -42787882 - AluSc SINE Alu -3 306 1 2234 72 0 42 chr15 42907872 42908004 -42787750 - AluSc SINE Alu -171 138 2 264 125 0 0 chr15 42908118 42908158 -42787596 - MER4D LTR ERV1 -73 830 791 220 179 18 36 chr15 42908907 42908963 -42786791 + C-rich Low_complexity Low_complexity 5 59 0 340 309 25 37 chr15 42910148 42910310 -42785444 + MIR SINE MIR 11 170 -92 2140 111 0 4 chr15 42910722 42911032 -42784722 - AluSg SINE Alu 0 309 1 805 223 6 24 chr15 42911205 42911371 -42784383 - FRAM SINE Alu -13 163 1 2324 110 0 7 chr15 42911381 42911691 -42784063 - AluSg SINE Alu -2 308 1 1990 166 0 0 chr15 42911947 42912249 -42783505 - AluSx SINE Alu -10 302 1 2316 92 16 0 chr15 42912311 42912614 -42783140 + AluSp SINE Alu 1 308 -5 1948 140 10 3 chr15 42912722 42913030 -42782724 - AluSx SINE Alu -2 310 1 1789 144 35 0 chr15 42913174 42913458 -42782296 - AluSx SINE Alu -18 294 1 2454 60 0 26 chr15 42914541 42914843 -42780911 - AluY SINE Alu -17 294 1 833 134 0 35 chr15 42915105 42915256 -42780498 - FLAM_A SINE Alu 0 151 6 2256 92 3 16 chr15 42915899 42916202 -42779552 - AluSq SINE Alu -12 301 3 2400 79 7 7 chr15 42916251 42916555 -42779199 + AluY SINE Alu 1 304 -7 1911 121 0 25 chr15 42916556 42916838 -42778916 + AluSx SINE Alu 29 303 -9 2200 123 10 0 chr15 42917489 42917798 -42777956 - AluSx SINE Alu 0 312 1 2816 22 0 13 chr15 42917798 42918116 -42777638 - AluYb8 SINE Alu -4 314 1 567 141 0 11 chr15 42918121 42918213 -42777541 - FLAM_A SINE Alu -19 123 33 1607 171 46 30 chr15 42919370 42919505 -42776249 + AluJo SINE Alu 1 132 -180 1920 124 17 3 chr15 42919505 42919796 -42775958 + AluSx SINE Alu 1 295 -17 1607 171 46 30 chr15 42919796 42919965 -42775789 + AluJo SINE Alu 132 310 -2 2206 113 3 10 chr15 42920040 42920350 -42775404 + AluSq SINE Alu 5 312 -1 2238 107 0 7 chr15 42920371 42920662 -42775092 - AluSc SINE Alu -20 289 1 1939 90 112 14 chr15 42920874 42921152 -42774602 + AluSq SINE Alu 1 305 -8 1821 181 3 10 chr15 42921894 42922203 -42773551 + AluJo SINE Alu 1 307 -5 1175 127 30 0 chr15 42922375 42922540 -42773214 - AluSg/x SINE Alu -17 295 126 1452 143 57 49 chr15 42922893 42923158 -42772596 - AluJo SINE Alu -16 296 30 2163 117 3 3 chr15 42923183 42923481 -42772273 - AluSq SINE Alu -13 300 3 225 0 0 0 chr15 42923647 42923672 -42772082 + (T)n Simple_repeat Simple_repeat 1 25 0 2555 69 0 0 chr15 42923779 42924083 -42771671 - AluY SINE Alu -7 304 1 2174 114 0 17 chr15 42924083 42924381 -42771373 - AluSx SINE Alu -18 294 1 2083 113 25 0 chr15 42924429 42924712 -42771042 - AluSx SINE Alu -22 290 1 2367 64 0 0 chr15 42925148 42925455 -42770299 + AluY SINE Alu 1 307 0 2053 119 24 0 chr15 42925507 42925801 -42769953 + AluSg SINE Alu 1 301 -9 2286 79 10 3 chr15 42927075 42927367 -42768387 + AluY SINE Alu 1 294 -17 1653 208 0 6 chr15 42927378 42927691 -42768063 + AluSx SINE Alu 1 311 -1 2201 110 7 7 chr15 42927928 42928237 -42767517 - AluSc SINE Alu 0 309 1 1628 149 75 4 chr15 42928239 42928507 -42767247 - AluSx SINE Alu -25 287 1 2323 116 0 0 chr15 42928759 42929061 -42766693 + AluSg SINE Alu 1 302 -8 21 36 0 0 chr15 42929177 42929205 -42766549 + AT_rich Low_complexity Low_complexity 1 28 0 402 123 0 0 chr15 42929205 42929262 -42766492 - Alu SINE Alu -10 292 236 451 106 15 0 chr15 42929266 42929332 -42766422 - L1PA8A LINE L1 -28 6103 6037 1316 134 5 0 chr15 42929332 42929518 -42766236 - AluSx SINE Alu -110 202 16 2250 83 3 20 chr15 42930001 42930303 -42765451 + AluSg SINE Alu 2 298 -12 450 0 0 0 chr15 42930303 42930353 -42765401 + (TA)n Simple_repeat Simple_repeat 2 51 0 1351 76 23 0 chr15 42930563 42930734 -42765020 - AluSg/x SINE Alu -4 308 134 2345 78 13 19 chr15 42930734 42931041 -42764713 - AluY SINE Alu -6 305 1 401 210 12 0 chr15 42931269 42931350 -42764404 - FLAM_C SINE Alu -25 118 37 2283 105 0 0 chr15 42931446 42931741 -42764013 + AluSg SINE Alu 1 295 -15 248 276 124 0 chr15 42931754 42931859 -42763895 + MIR SINE MIR 51 168 -94 188 258 196 21 chr15 42931908 42932005 -42763749 - L2 LINE L2 0 3313 3200 2159 127 3 16 chr15 42932010 42932326 -42763428 + AluJb SINE Alu 1 312 0 180 0 0 0 chr15 42932711 42932731 -42763023 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2139 138 0 6 chr15 42932916 42933227 -42762527 + AluSg SINE Alu 1 309 -1 1578 178 64 4 chr15 42933254 42933535 -42762219 + AluJb SINE Alu 1 298 -14 1848 122 6 81 chr15 42934923 42935345 -42760409 + AluJb SINE Alu 2 398 0 2077 101 3 57 chr15 42935506 42935824 -42759930 + AluSx SINE Alu 1 301 -11 2301 122 0 0 chr15 42936169 42936480 -42759274 - AluSx SINE Alu -1 311 1 2159 128 3 7 chr15 42936941 42937247 -42758507 - AluSx SINE Alu -7 305 1 1929 118 11 0 chr15 42937275 42937545 -42758209 + AluSx SINE Alu 1 273 -39 320 124 21 0 chr15 42937667 42937726 -42758028 - Alu SINE Alu -257 46 2 225 283 26 88 chr15 42937836 42937859 -42757895 - L2 LINE L2 0 3313 3290 1969 146 14 0 chr15 42937859 42938154 -42757600 + AluSx SINE Alu 1 299 -13 2182 102 0 3 chr15 42938157 42938477 -42757277 + AluSg SINE Alu 1 319 0 225 283 26 88 chr15 42938477 42938561 -42757193 - L2 LINE L2 -25 3288 3208 1635 124 0 13 chr15 42938914 42939148 -42756606 + AluSg/x SINE Alu 69 299 -13 1380 102 84 14 chr15 42939334 42939549 -42756205 - MER30 DNA MER1_type 0 230 1 225 167 24 0 chr15 42939586 42939628 -42756126 + MER57A LTR ERV1 295 337 -66 2410 98 3 0 chr15 42939645 42939952 -42755802 + AluSp SINE Alu 1 308 -5 2045 141 7 0 chr15 42940461 42940765 -42754989 + AluJb SINE Alu 1 306 -6 2256 93 0 20 chr15 42940768 42941070 -42754684 + AluSg SINE Alu 2 297 -13 312 296 0 0 chr15 42941098 42941169 -42754585 - L2 LINE L2 -2 3270 3200 189 0 0 0 chr15 42941350 42941371 -42754383 + (A)n Simple_repeat Simple_repeat 1 21 0 252 135 0 0 chr15 42941382 42941419 -42754335 - ERVL LTR ERVL -1243 4521 4485 2264 118 0 0 chr15 42941540 42941837 -42753917 + AluSx SINE Alu 1 297 -15 2201 100 10 0 chr15 42941839 42942129 -42753625 + AluSg SINE Alu 1 293 -17 23 0 0 0 chr15 42942236 42942259 -42753495 + AT_rich Low_complexity Low_complexity 1 23 0 518 107 0 7 chr15 42942291 42942534 -42753220 - AluSc SINE Alu -1 308 1 287 250 40 13 chr15 42942539 42942615 -42753139 + L2 LINE L2 3177 3254 -18 1759 113 29 48 chr15 42942666 42942976 -42752778 + AluSg SINE Alu 1 304 -6 2032 121 7 7 chr15 42943174 42943472 -42752282 - AluSx SINE Alu -14 298 1 383 327 44 9 chr15 42943476 42943702 -42752052 - L2 LINE L2 -604 2710 2477 183 80 0 0 chr15 42943994 42944019 -42751735 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1969 91 4 0 chr15 42944021 42944262 -42751492 - AluSp SINE Alu -36 277 36 2408 100 3 3 chr15 42945191 42945502 -42750252 - AluSq SINE Alu -2 311 1 22 35 0 0 chr15 42945727 42945756 -42749998 + AT_rich Low_complexity Low_complexity 1 29 0 633 179 152 7 chr15 42945759 42945910 -42749844 + AluJo SINE Alu 114 286 -26 34 0 0 0 chr15 42945910 42945944 -42749810 + AT_rich Low_complexity Low_complexity 1 34 0 2324 69 3 13 chr15 42946669 42946973 -42748781 - AluY SINE Alu -10 301 1 1501 233 72 47 chr15 42946986 42947169 -42748585 - L2 LINE L2 -5 3308 3131 2372 67 7 0 chr15 42947169 42947454 -42748300 + AluY SINE Alu 1 287 -24 1501 233 72 47 chr15 42947454 42948052 -42747702 - L2 LINE L2 -182 3131 2529 295 122 0 0 chr15 42948054 42948095 -42747659 - AluJo SINE Alu -12 290 250 1068 133 0 48 chr15 42948095 42948260 -42747494 - AluJo SINE Alu -155 157 1 1315 241 26 34 chr15 42948349 42948381 -42747373 - L2 LINE L2 -1347 1967 1936 2334 93 3 13 chr15 42948381 42948682 -42747072 + AluSx SINE Alu 1 298 -14 1315 241 26 34 chr15 42948682 42949027 -42746727 - L2 LINE L2 -1378 1936 1593 882 153 0 0 chr15 42949415 42949546 -42746208 + FLAM_C SINE Alu 1 131 -2 180 0 0 0 chr15 42950422 42950442 -42745312 + (T)n Simple_repeat Simple_repeat 1 20 0 812 98 0 9 chr15 42950804 42950916 -42744838 - HY1 scRNA scRNA -1 111 1 240 35 0 0 chr15 42950943 42950972 -42744782 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2141 75 0 127 chr15 42951017 42951364 -42744390 + AluSc SINE Alu 1 303 -6 2241 89 0 7 chr15 42951663 42951987 -42743767 + AluY SINE Alu 1 322 0 487 291 3 7 chr15 42952545 42952694 -42743060 + MIR3 SINE MIR 56 205 -3 2111 101 32 0 chr15 42953620 42953898 -42741856 - AluSc SINE Alu -21 288 2 569 200 95 0 chr15 42953930 42954035 -42741719 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 42954036 42954072 -42741682 + AT_rich Low_complexity Low_complexity 1 36 0 2503 188 50 84 chr15 42954072 42954241 -42741513 + L1MC2 LINE L1 4921 5094 -1250 2145 123 0 0 chr15 42954241 42954576 -42741178 - AluSq SINE Alu 0 335 1 2503 188 50 84 chr15 42954576 42955289 -42740465 + L1MC2 LINE L1 5094 5830 -514 854 145 8 0 chr15 42955289 42955420 -42740334 + FLAM_A SINE Alu 2 133 0 2503 188 50 84 chr15 42955420 42955544 -42740210 + L1MC2 LINE L1 5830 5957 -387 2200 102 3 3 chr15 42955544 42955837 -42739917 + AluSc SINE Alu 1 293 -16 2503 188 50 84 chr15 42955837 42956300 -42739454 + L1MC2 LINE L1 5957 6320 -24 2307 89 0 16 chr15 42956670 42956973 -42738781 + AluSx SINE Alu 1 298 -14 2025 112 0 17 chr15 42956986 42957282 -42738472 + AluSx SINE Alu 1 291 -21 2342 87 10 0 chr15 42957287 42957585 -42738169 + AluSq SINE Alu 2 302 -11 2515 66 3 3 chr15 42958343 42958648 -42737106 - AluSp SINE Alu -1 312 8 2218 119 7 0 chr15 42958814 42959116 -42736638 - AluSg SINE Alu -6 304 1 634 187 187 16 chr15 42959938 42960120 -42735634 + MER46C DNA MER2_type 2 214 -124 2215 123 7 0 chr15 42960120 42960429 -42735325 - AluSp SINE Alu -2 311 1 1782 166 7 3 chr15 42960431 42960720 -42735034 - AluJo SINE Alu -21 291 2 439 227 0 23 chr15 42960785 42960873 -42734881 - FRAM/FAM SINE Alu -92 84 1 259 270 70 30 chr15 42960881 42960981 -42734773 - MIR SINE MIR -67 141 38 2531 70 0 0 chr15 42961431 42961730 -42734024 + AluSg SINE Alu 1 299 -11 2376 63 11 3 chr15 42961730 42962015 -42733739 + AluSc SINE Alu 1 288 -21 1654 161 39 73 chr15 42962485 42962555 -42733199 - L1MD2 LINE L1 -1 6358 6287 1491 188 35 14 chr15 42962555 42962837 -42732917 + AluJb SINE Alu 1 288 -24 1654 161 39 73 chr15 42962837 42963150 -42732604 - L1MD2 LINE L1 -72 6287 5988 2329 110 0 0 chr15 42963276 42963577 -42732177 + AluSx SINE Alu 1 301 -11 1552 174 62 4 chr15 42963658 42963934 -42731820 - AluSx SINE Alu -20 292 1 584 244 105 23 chr15 42963993 42964259 -42731495 - HAL1 LINE L1 -309 2198 1911 766 188 36 85 chr15 42964412 42964636 -42731118 - L1ME3 LINE L1 0 6162 5950 2393 87 0 16 chr15 42964658 42964968 -42730786 - AluSg SINE Alu -5 305 1 249 296 0 61 chr15 42965423 42965521 -42730233 - L2 LINE L2 -48 3224 3133 1466 167 32 39 chr15 42965848 42965945 -42729809 + AluJo SINE Alu 24 120 -192 294 29 0 0 chr15 42965945 42965980 -42729774 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1466 167 32 39 chr15 42965980 42966163 -42729591 + AluJo SINE Alu 120 302 -10 2299 102 13 0 chr15 42966208 42966513 -42729241 - AluSg SINE Alu 0 310 2 2404 87 7 0 chr15 42966563 42966862 -42728892 - AluSx SINE Alu -11 301 1 1818 164 3 23 chr15 42966994 42967299 -42728455 - AluJb SINE Alu -13 299 1 2464 86 0 0 chr15 42967307 42967608 -42728146 - AluSp SINE Alu -12 301 1 2140 122 7 0 chr15 42968602 42968897 -42726857 + AluSg SINE Alu 2 298 -12 2294 112 0 3 chr15 42968994 42969299 -42726455 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 42969414 42969445 -42726309 + AT_rich Low_complexity Low_complexity 1 31 0 846 118 0 52 chr15 42969579 42969715 -42726039 - FLAM_C SINE Alu -3 130 2 191 342 13 13 chr15 42969827 42969903 -42725851 - MIR3 SINE MIR -130 78 3 726 327 67 40 chr15 42971278 42971569 -42724185 - L3 LINE CR1 -9 1568 1257 1880 125 59 3 chr15 42971569 42971858 -42723896 - AluSx SINE Alu -6 306 2 726 327 67 40 chr15 42971858 42972061 -42723693 - L3 LINE CR1 -320 1257 1061 1564 145 3 74 chr15 42972440 42972723 -42723031 - AluSx SINE Alu -24 288 26 2137 133 7 0 chr15 42972857 42973151 -42722603 - AluSx SINE Alu -16 296 1 322 307 0 0 chr15 42973642 42973730 -42722024 + L2 LINE L2 3185 3272 0 2142 135 3 6 chr15 42973838 42974149 -42721605 - AluJb SINE Alu -2 310 1 2037 133 7 3 chr15 42974654 42974947 -42720807 + AluSx SINE Alu 1 294 -18 2157 124 0 0 chr15 42975102 42975384 -42720370 - AluSx SINE Alu -30 282 1 24 0 0 0 chr15 42979329 42979353 -42716401 + AT_rich Low_complexity Low_complexity 1 24 0 1861 159 30 3 chr15 42979819 42980120 -42715634 + AluJb SINE Alu 1 309 -3 405 255 39 0 chr15 42981299 42981401 -42714353 - MIR3 SINE MIR -41 167 62 1933 138 7 37 chr15 42981519 42981815 -42713939 - AluSx SINE Alu -25 287 1 409 179 48 0 chr15 42981817 42981901 -42713853 - AluJo/FLAM SINE Alu -182 130 43 393 211 22 0 chr15 42981908 42982000 -42713754 - AluSc SINE Alu -108 191 127 362 325 17 8 chr15 42982490 42982610 -42713144 - L2 LINE L2 -1 3271 3151 494 289 69 12 chr15 42982620 42982793 -42712961 + MER5A DNA MER1_type 1 183 -6 647 139 0 28 chr15 42982921 42983029 -42712725 + AluJb SINE Alu 198 302 -10 551 245 61 0 chr15 42983036 42983183 -42712571 + MIR SINE MIR 20 175 -87 1697 128 101 0 chr15 42983184 42983442 -42712312 - AluSx SINE Alu -13 299 16 2402 71 0 0 chr15 42983601 42983923 -42711831 + AluY SINE Alu 1 322 0 248 301 8 5 chr15 42984149 42984274 -42711480 - MER5A DNA MER1_type -1 188 1 1627 181 50 3 chr15 42984495 42984777 -42710977 - AluJb SINE Alu -17 295 1 1587 175 0 4 chr15 42985251 42985503 -42710251 - AluJb SINE Alu -21 291 41 1989 152 0 7 chr15 42985706 42986003 -42709751 + AluJo SINE Alu 1 295 -17 191 59 0 29 chr15 42986046 42986080 -42709674 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 627 137 10 10 chr15 42986152 42986254 -42709500 - FLAM_A SINE Alu -17 125 24 25 0 0 0 chr15 42986350 42986375 -42709379 + AT_rich Low_complexity Low_complexity 1 25 0 2550 55 13 0 chr15 42986890 42987197 -42708557 + AluY SINE Alu 1 311 0 2205 111 10 0 chr15 42987899 42988188 -42707566 - AluSx SINE Alu -20 292 1 1199 143 6 0 chr15 42988244 42988426 -42707328 - AluSg/x SINE Alu -6 306 124 2196 102 23 7 chr15 42988428 42988731 -42707023 - AluSq SINE Alu -5 308 1 1669 137 3 73 chr15 42988747 42989060 -42706694 - AluJb SINE Alu -21 291 1 1322 130 14 28 chr15 42989062 42989278 -42706476 + MER46A DNA MER2_type 24 236 0 359 338 56 19 chr15 42989534 42989677 -42706077 - MIR3 SINE MIR -17 191 40 1884 131 24 17 chr15 42989677 42989967 -42705787 + AluSx SINE Alu 1 292 -20 359 338 56 19 chr15 42989967 42989983 -42705771 - MIR3 SINE MIR -168 40 26 240 276 13 26 chr15 42990186 42990262 -42705492 - L2 LINE L2 -1 3271 3197 514 267 9 39 chr15 42990637 42990801 -42704953 - MIR3 SINE MIR -71 137 8 216 67 0 0 chr15 42990894 42990924 -42704830 + (T)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr15 42994023 42994052 -42701702 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 308 56 0 0 chr15 42994147 42994183 -42701571 + U2 snRNA snRNA 1 36 -152 1046 185 50 10 chr15 42995042 42995242 -42700512 - MER3 DNA MER1_type 0 209 2 1477 184 89 9 chr15 42995251 42995414 -42700340 - MER58B DNA MER1_type -2079 341 192 2102 97 38 0 chr15 42995414 42995704 -42700050 - AluSp SINE Alu -12 301 1 1477 184 89 9 chr15 42995704 42995856 -42699898 - MER58B DNA MER1_type -2228 192 1 213 39 0 0 chr15 42997368 42997394 -42698360 + (CGG)n Simple_repeat Simple_repeat 3 28 0 237 214 0 68 chr15 42997431 42997534 -42698220 + G-rich Low_complexity Low_complexity 4 99 0 215 276 5 83 chr15 42997633 42997825 -42697929 + G-rich Low_complexity Low_complexity 3 179 0 758 181 0 15 chr15 42999260 42999393 -42696361 + FLAM_C SINE Alu 3 133 0 873 138 8 0 chr15 42999744 42999867 -42695887 + FLAM_C SINE Alu 1 124 -19 1862 174 0 13 chr15 42999884 43000189 -42695565 + AluJb SINE Alu 1 301 -11 21 57 0 0 chr15 43002073 43002108 -42693646 + AT_rich Low_complexity Low_complexity 1 35 0 2111 120 3 0 chr15 43002135 43002452 -42693302 - AluSq SINE Alu 0 318 1 2495 88 0 0 chr15 43002605 43002911 -42692843 + AluSq SINE Alu 1 306 -7 2196 116 7 0 chr15 43004336 43004630 -42691124 + AluSc SINE Alu 1 296 -13 1097 151 6 34 chr15 43004781 43004960 -42690794 - AluJ SINE Alu -10 302 129 396 96 39 48 chr15 43004962 43005066 -42690688 + CT-rich Low_complexity Low_complexity 2 104 0 499 198 0 0 chr15 43005094 43005175 -42690579 - AluJo SINE Alu -18 294 214 229 148 131 66 chr15 43005176 43005237 -42690517 - AluJo SINE Alu -151 151 87 1040 181 0 117 chr15 43005238 43005487 -42690267 - AluJo SINE Alu -92 220 1 473 320 35 0 chr15 43005525 43005697 -42690057 + MIR3 SINE MIR 30 207 -1 1457 139 25 95 chr15 43005705 43005838 -42689916 + AluJb SINE Alu 14 155 -157 1490 123 5 0 chr15 43005838 43006041 -42689713 + AluSq SINE Alu 86 289 -24 1457 139 25 95 chr15 43006041 43006224 -42689530 + AluJb SINE Alu 155 308 -4 567 72 12 12 chr15 43006519 43006602 -42689152 + AluS SINE Alu 2 84 -228 1195 179 61 14 chr15 43006907 43007119 -42688635 - AluJb SINE Alu -90 222 1 2336 92 7 0 chr15 43007297 43007591 -42688163 - AluSg SINE Alu -14 296 1 1934 149 10 7 chr15 43007853 43008148 -42687606 + AluSx SINE Alu 3 298 -14 2130 101 7 26 chr15 43008346 43008654 -42687100 - AluSp SINE Alu -11 302 1 2229 112 0 6 chr15 43008672 43008984 -42686770 - AluSx SINE Alu -2 310 1 1632 161 71 0 chr15 43009357 43009637 -42686117 + AluJb SINE Alu 4 303 -9 2507 84 0 0 chr15 43009960 43010268 -42685486 - AluSg SINE Alu -2 308 1 2335 93 0 10 chr15 43010380 43010544 -42685210 - AluSx SINE Alu -15 297 136 2118 107 3 20 chr15 43010544 43010844 -42684910 - AluSg SINE Alu -15 295 1 2335 93 0 10 chr15 43010844 43010979 -42684775 - AluSx SINE Alu -176 136 1 2386 64 3 0 chr15 43010988 43011271 -42684483 - AluSp SINE Alu -16 297 14 182 244 67 0 chr15 43011394 43011439 -42684315 - L2 LINE L2 0 3272 3225 686 206 8 0 chr15 43011731 43011862 -42683892 - FLAM_A SINE Alu 0 133 2 207 0 0 0 chr15 43011869 43011892 -42683862 + (T)n Simple_repeat Simple_repeat 1 23 0 2300 70 20 17 chr15 43012164 43012462 -42683292 - AluSg SINE Alu -11 299 1 309 253 121 110 chr15 43012996 43013269 -42682485 - L2 LINE L2 -5 3308 3033 2518 75 0 0 chr15 43013904 43014211 -42681543 - AluY SINE Alu -4 307 1 2200 126 3 3 chr15 43014390 43014700 -42681054 - AluSx SINE Alu -2 310 1 381 22 0 0 chr15 43014926 43014972 -42680782 + (TG)n Simple_repeat Simple_repeat 2 47 0 890 208 0 6 chr15 43014975 43015134 -42680620 - FAM SINE Alu -16 159 2 2008 105 3 34 chr15 43015149 43015443 -42680311 - AluSx SINE Alu -19 293 9 2567 75 0 0 chr15 43016057 43016363 -42679391 - AluY SINE Alu -5 306 1 2307 99 0 16 chr15 43016409 43016712 -42679042 + AluSx SINE Alu 1 298 -14 2083 109 0 10 chr15 43016725 43017019 -42678735 + AluSx SINE Alu 1 291 -21 2324 87 10 0 chr15 43017024 43017322 -42678432 + AluSq SINE Alu 2 302 -11 2538 66 3 0 chr15 43018080 43018385 -42677369 - AluSp SINE Alu 0 313 8 2201 119 7 0 chr15 43018551 43018853 -42676901 - AluSg SINE Alu -6 304 1 650 187 187 16 chr15 43019675 43019857 -42675897 + MER46C DNA MER2_type 2 214 -124 2214 120 7 0 chr15 43019857 43020166 -42675588 - AluSp SINE Alu -2 311 1 1740 170 7 3 chr15 43020168 43020457 -42675297 - AluJo SINE Alu -21 291 2 473 227 0 23 chr15 43020522 43020610 -42675144 - FRAM/FAM SINE Alu -92 84 1 293 260 70 30 chr15 43020618 43020718 -42675036 - MIR SINE MIR -67 141 38 2489 77 0 0 chr15 43021167 43021466 -42674288 + AluSg SINE Alu 1 299 -11 2368 63 7 3 chr15 43021466 43021753 -42674001 + AluSc SINE Alu 1 288 -21 1666 161 39 73 chr15 43022223 43022293 -42673461 - L1MD2 LINE L1 -1 6358 6287 1479 188 35 14 chr15 43022293 43022575 -42673179 + AluJb SINE Alu 1 288 -24 1666 161 39 73 chr15 43022575 43022888 -42672866 - L1MD2 LINE L1 -72 6287 5988 2299 110 0 0 chr15 43023014 43023314 -42672440 + AluSx SINE Alu 1 300 -12 1524 178 62 4 chr15 43023395 43023671 -42672083 - AluSx SINE Alu -20 292 1 609 244 105 23 chr15 43023730 43023996 -42671758 - HAL1 LINE L1 -309 2198 1911 774 188 36 85 chr15 43024149 43024373 -42671381 - L1ME3 LINE L1 0 6162 5950 2371 87 0 16 chr15 43024395 43024705 -42671049 - AluSg SINE Alu -5 305 1 278 296 0 61 chr15 43025160 43025258 -42670496 - L2 LINE L2 -48 3224 3133 1466 151 0 103 chr15 43025585 43025896 -42669858 + AluJo SINE Alu 24 302 -10 2280 102 13 0 chr15 43025941 43026246 -42669508 - AluSg SINE Alu 0 310 2 2361 88 7 0 chr15 43026296 43026593 -42669161 - AluSx SINE Alu -13 299 1 1802 164 3 23 chr15 43026726 43027031 -42668723 - AluJb SINE Alu -13 299 1 2476 83 0 0 chr15 43027036 43027338 -42668416 - AluSp SINE Alu -11 302 1 2115 122 7 0 chr15 43028332 43028627 -42667127 + AluSg SINE Alu 2 298 -12 2276 112 0 3 chr15 43028724 43029029 -42666725 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 43029144 43029175 -42666579 + AT_rich Low_complexity Low_complexity 1 31 0 884 84 0 53 chr15 43029300 43029431 -42666323 - FLAM_C SINE Alu -4 139 16 218 325 12 36 chr15 43029549 43029632 -42666122 - MIR3 SINE MIR -125 83 3 862 327 67 40 chr15 43031007 43031298 -42664456 - L3 LINE CR1 -9 1568 1257 1869 125 59 3 chr15 43031298 43031587 -42664167 - AluSx SINE Alu -6 306 2 862 327 67 40 chr15 43031587 43031790 -42663964 - L3 LINE CR1 -320 1257 1061 1503 165 4 35 chr15 43032168 43032423 -42663331 - AluSx SINE Alu -24 288 42 2114 133 10 0 chr15 43032584 43032877 -42662877 - AluSx SINE Alu -16 296 1 351 307 0 0 chr15 43033368 43033456 -42662298 + L2 LINE L2 3185 3272 0 2125 135 3 6 chr15 43033564 43033875 -42661879 - AluJb SINE Alu -2 310 1 2018 130 7 3 chr15 43034380 43034672 -42661082 + AluSx SINE Alu 1 293 -19 2200 125 0 0 chr15 43035007 43035304 -42660450 + AluSx SINE Alu 1 297 -15 1886 149 17 17 chr15 43035306 43035602 -42660152 + AluSg SINE Alu 1 296 -14 344 191 73 0 chr15 43035613 43035681 -42660073 + MIR SINE MIR 182 254 -8 24 0 0 0 chr15 43036741 43036765 -42658989 + AT_rich Low_complexity Low_complexity 1 24 0 518 226 18 101 chr15 43037457 43037551 -42658203 + MER5A DNA MER1_type 35 111 -78 2094 145 0 19 chr15 43037551 43037862 -42657892 - AluJb SINE Alu -7 305 1 518 226 18 101 chr15 43037862 43037935 -42657819 + MER5A DNA MER1_type 111 188 -1 626 182 21 35 chr15 43038150 43038293 -42657461 + MIR SINE MIR 119 259 -3 641 158 0 42 chr15 43038797 43038917 -42656837 + Tigger7 DNA MER2_type 3 117 -588 1624 175 43 28 chr15 43038919 43039064 -42656690 + Tigger7 DNA MER2_type 2256 2397 -190 1803 166 3 13 chr15 43039064 43039371 -42656383 - AluJo SINE Alu -4 308 5 1624 175 43 28 chr15 43039371 43039551 -42656203 + Tigger7 DNA MER2_type 2397 2586 -1 201 27 0 81 chr15 43039800 43039837 -42655917 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2293 93 0 29 chr15 43040058 43040368 -42655386 + AluSq SINE Alu 1 301 -12 189 279 127 76 chr15 43040485 43040582 -42655172 + MER5B DNA MER1_type 12 121 -57 2449 74 0 0 chr15 43040582 43040880 -42654874 - AluSg SINE Alu -12 298 1 189 279 127 76 chr15 43040880 43040940 -42654814 + MER5B DNA MER1_type 121 177 -1 22 35 0 0 chr15 43041522 43041551 -42654203 + AT_rich Low_complexity Low_complexity 1 29 0 628 130 0 10 chr15 43041708 43041808 -42653946 - L1PA15 LINE L1 -21 6144 6046 47 0 0 0 chr15 43041883 43041930 -42653824 + AT_rich Low_complexity Low_complexity 1 47 0 1842 162 14 3 chr15 43042677 43042973 -42652781 + AluJo SINE Alu 1 299 -13 1854 144 10 7 chr15 43043509 43043800 -42651954 - AluSx SINE Alu -16 296 5 21 0 0 0 chr15 43043804 43043825 -42651929 + AT_rich Low_complexity Low_complexity 1 21 0 2345 95 0 3 chr15 43044522 43044826 -42650928 + AluSq SINE Alu 1 303 -10 28 0 0 0 chr15 43045142 43045170 -42650584 + AT_rich Low_complexity Low_complexity 1 28 0 1988 139 3 19 chr15 43045230 43045540 -42650214 - AluSx SINE Alu -3 309 5 23 33 0 0 chr15 43045600 43045630 -42650124 + AT_rich Low_complexity Low_complexity 1 30 0 2037 146 0 3 chr15 43045961 43046262 -42649492 + AluSx SINE Alu 1 300 -12 362 295 18 27 chr15 43046376 43046456 -42649298 - L2 LINE L2 0 3272 3192 783 183 16 0 chr15 43046456 43046582 -42649172 + FLAM_A SINE Alu 1 128 -5 362 295 18 27 chr15 43046582 43046613 -42649141 - L2 LINE L2 -80 3192 3162 42 36 0 0 chr15 43046619 43046675 -42649079 + AT_rich Low_complexity Low_complexity 1 56 0 1661 154 4 11 chr15 43046677 43046943 -42648811 - AluJb SINE Alu -42 270 7 787 317 89 28 chr15 43047117 43047782 -42647972 - L2 LINE L2 -243 3029 2325 290 291 78 10 chr15 43047782 43047885 -42647869 - L2 LINE L2 -46 3226 3117 200 108 0 27 chr15 43047973 43048010 -42647744 + (CGGGGG)n Simple_repeat Simple_repeat 5 40 0 232 316 111 53 chr15 43048095 43048285 -42647469 - L2 LINE L2 -995 2319 2119 319 248 99 58 chr15 43048633 43048754 -42647000 + MIR SINE MIR 6 131 -131 780 202 112 6 chr15 43049058 43049236 -42646518 - MER20 DNA MER1_type 0 219 23 364 226 35 26 chr15 43049264 43049379 -42646375 + L1ME3A LINE L1 6055 6170 0 202 277 0 0 chr15 43050323 43050370 -42645384 + CT-rich Low_complexity Low_complexity 4 50 0 235 211 56 14 chr15 43051101 43051172 -42644582 - L1ME4a LINE L1 -30 6091 6018 2035 120 38 0 chr15 43052361 43052652 -42643102 + AluSg SINE Alu 1 302 -8 3979 155 112 24 chr15 43052913 43053151 -42642603 - L1MB7 LINE L1 -19 6165 5949 2410 88 0 0 chr15 43053151 43053446 -42642308 + AluSg SINE Alu 1 295 -15 3979 155 112 24 chr15 43053446 43054052 -42641702 - L1MB7 LINE L1 -235 5949 5253 4336 193 15 75 chr15 43054053 43054651 -42641103 - L1MB7 LINE L1 -1101 5045 4544 1930 150 0 20 chr15 43054651 43054957 -42640797 - AluSx SINE Alu -12 300 1 4336 193 15 75 chr15 43054957 43055483 -42640271 - L1MB7 LINE L1 -1602 4544 3988 1729 126 3 114 chr15 43055484 43055818 -42639936 - AluJb SINE Alu -15 297 1 198 319 96 32 chr15 43055945 43056039 -42639715 + MIR SINE MIR 23 122 -86 433 343 59 43 chr15 43056373 43056796 -42638958 + L2 LINE L2 2228 2657 -657 237 318 0 15 chr15 43056905 43056971 -42638783 + MIR SINE MIR 3 67 -195 1874 77 0 4 chr15 43056972 43057207 -42638547 - AluSg SINE Alu -19 291 58 237 33 0 0 chr15 43057249 43057279 -42638475 + (TTA)n Simple_repeat Simple_repeat 1 30 0 224 175 35 0 chr15 43057280 43057337 -42638417 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 2283 87 3 3 chr15 43058609 43058898 -42636856 - AluSp SINE Alu -24 289 1 1868 114 23 4 chr15 43058914 43059177 -42636577 - AluSx SINE Alu -44 268 1 491 209 108 23 chr15 43059178 43059307 -42636447 + MIR SINE MIR 56 195 -67 1741 156 14 7 chr15 43060281 43060564 -42635190 - AluJo SINE Alu -27 285 1 330 267 48 29 chr15 43060584 43060689 -42635065 + MIR3 SINE MIR 87 193 -15 823 258 159 41 chr15 43060723 43061241 -42634513 + L2 LINE L2 2650 3256 -57 180 77 0 0 chr15 43061241 43061267 -42634487 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 823 258 159 41 chr15 43061267 43061333 -42634421 + L2 LINE L2 3256 3313 0 1662 255 100 68 chr15 43061404 43061924 -42633830 - HAL1 LINE L1 -1604 903 346 1970 139 3 3 chr15 43061924 43062218 -42633536 - AluJb SINE Alu -18 294 1 1662 255 100 68 chr15 43062218 43062518 -42633236 - HAL1 LINE L1 -2161 346 57 1248 221 47 0 chr15 43062572 43062870 -42632884 - L1MD2 LINE L1 -4 6355 6044 2377 84 3 0 chr15 43062880 43063176 -42632578 - AluSp SINE Alu -15 298 2 2413 60 0 10 chr15 43063180 43063480 -42632274 - AluY SINE Alu -14 297 1 2357 90 0 3 chr15 43063578 43063879 -42631875 - AluSg SINE Alu -10 300 1 1238 109 11 16 chr15 43063913 43064096 -42631658 - AluSx SINE Alu -130 182 1 1691 149 0 8 chr15 43064107 43064362 -42631392 - AluJb SINE Alu -25 287 35 2191 125 3 0 chr15 43064367 43064664 -42631090 - AluSx SINE Alu -14 298 1 4475 203 59 70 chr15 43064676 43064812 -42630942 + L1M4 LINE L1 3743 3879 -2267 1568 140 19 72 chr15 43064812 43065119 -42630635 - AluJb SINE Alu -21 291 1 4475 203 59 70 chr15 43065119 43065581 -42630173 + L1M4 LINE L1 3879 4345 -1801 2425 94 0 0 chr15 43065581 43065889 -42629865 + AluY SINE Alu 1 308 -3 4475 203 59 70 chr15 43065889 43066530 -42629224 + L1M4 LINE L1 4345 4992 -1154 1433 194 14 10 chr15 43066530 43066818 -42628936 + AluJo SINE Alu 1 289 -23 656 155 0 0 chr15 43066727 43066824 -42628930 + AluJo/FRAM SINE Alu 199 295 -17 * 1740 154 61 0 chr15 43066825 43067118 -42628636 + AluSx SINE Alu 1 311 -1 4475 203 59 70 chr15 43067118 43067406 -42628348 + L1M4 LINE L1 4998 5263 -883 2262 105 3 10 chr15 43067616 43067930 -42627824 + AluSx SINE Alu 1 312 0 196 261 85 137 chr15 43067935 43068088 -42627666 - L2 LINE L2 -299 2973 2829 1902 51 0 21 chr15 43068184 43068421 -42627333 - L1PA8 LINE L1 -2 6170 5939 381 342 112 20 chr15 43068467 43068771 -42626983 - L2 LINE L2 -610 2704 2373 21 57 0 0 chr15 43068799 43068834 -42626920 + AT_rich Low_complexity Low_complexity 1 35 0 703 195 0 17 chr15 43069240 43069358 -42626396 - FLAM_A SINE Alu -17 116 1 2070 120 3 23 chr15 43069598 43069899 -42625855 + AluSx SINE Alu 1 295 -17 1367 186 50 4 chr15 43069924 43070182 -42625572 - AluJo SINE Alu -29 283 14 3453 138 26 23 chr15 43070188 43070804 -42624950 - L1MD1 LINE L1 -308 5934 5317 22 56 0 0 chr15 43070804 43070840 -42624914 + AT_rich Low_complexity Low_complexity 1 36 0 1399 184 86 4 chr15 43070901 43071168 -42624586 - AluJo SINE Alu -23 289 1 469 219 109 22 chr15 43071213 43071350 -42624404 + LTR67 LTR ERVL 409 557 0 1826 122 0 93 chr15 43071441 43071785 -42623969 + AluJb SINE Alu 1 312 0 2084 102 7 0 chr15 43071785 43072059 -42623695 + AluSx SINE Alu 1 276 -36 2454 80 0 13 chr15 43072059 43072373 -42623381 + AluSp SINE Alu 2 311 -2 313 136 119 0 chr15 43072558 43072617 -42623137 - MER106A DNA MER1_type -115 121 56 2376 73 3 29 chr15 43072657 43072973 -42622781 + AluSp SINE Alu 1 308 -5 2269 102 7 0 chr15 43073376 43073680 -42622074 - AluSp SINE Alu -1 312 7 1470 168 0 51 chr15 43073716 43073853 -42621901 - AluJo SINE Alu -52 260 118 2125 103 0 33 chr15 43073853 43074005 -42621749 - AluSx SINE Alu -20 292 137 405 0 0 0 chr15 43074005 43074050 -42621704 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2419 68 3 0 chr15 43074051 43074347 -42621407 - AluY SINE Alu -14 297 1 2123 99 32 0 chr15 43074349 43074633 -42621121 - AluSg SINE Alu -17 293 1 2125 103 0 33 chr15 43074633 43074777 -42620977 - AluSx SINE Alu -176 136 1 1470 168 0 51 chr15 43074777 43074913 -42620841 - AluJo SINE Alu -194 118 1 2534 50 7 3 chr15 43075204 43075506 -42620248 - AluY SINE Alu -8 303 1 552 191 0 32 chr15 43075521 43075615 -42620139 - AluJb SINE Alu -35 277 187 830 92 18 0 chr15 43075616 43075725 -42620029 + AluSp SINE Alu 1 111 -202 274 179 18 18 chr15 43075725 43075781 -42619973 - AluS SINE Alu -204 99 44 256 244 18 134 chr15 43075903 43076067 -42619687 + L2 LINE L2 3169 3313 0 192 310 46 58 chr15 43076232 43076319 -42619435 - L2 LINE L2 -12 3260 3175 2029 122 18 43 chr15 43076925 43077252 -42618502 - MER1B DNA MER1_type 0 339 21 2573 56 0 3 chr15 43077304 43077607 -42618147 - AluSp SINE Alu -11 302 1 1048 225 14 0 chr15 43077607 43077816 -42617938 + AluJb SINE Alu 101 312 0 2122 127 0 0 chr15 43078316 43078607 -42617147 - AluSx SINE Alu -21 291 1 24 0 0 0 chr15 43082552 43082576 -42613178 + AT_rich Low_complexity Low_complexity 1 24 0 1855 159 30 3 chr15 43083042 43083344 -42612410 + AluJb SINE Alu 1 310 -2 439 255 39 0 chr15 43084523 43084625 -42611129 - MIR3 SINE MIR -41 167 62 1908 138 7 37 chr15 43084743 43085039 -42610715 - AluSx SINE Alu -25 287 1 439 179 48 0 chr15 43085041 43085125 -42610629 - AluJo/FLAM SINE Alu -182 130 43 389 211 22 0 chr15 43085132 43085224 -42610530 - FRAM/FAM SINE Alu -109 57 1 400 325 17 8 chr15 43085713 43085833 -42609921 - L2 LINE L2 -1 3271 3151 549 278 69 12 chr15 43085843 43086016 -42609738 + MER5A DNA MER1_type 1 183 -6 717 130 0 28 chr15 43086144 43086252 -42609502 + AluJb SINE Alu 198 302 -10 601 245 61 0 chr15 43086259 43086406 -42609348 + MIR SINE MIR 20 175 -87 1741 139 95 0 chr15 43086407 43086680 -42609074 - AluSx SINE Alu -13 299 1 2059 122 7 3 chr15 43086909 43087197 -42608557 + AluSx SINE Alu 1 289 -23 1796 177 0 3 chr15 43088050 43088350 -42607404 - AluJb SINE Alu -13 299 1 2827 240 34 21 chr15 43088388 43089097 -42606657 - L1ME1 LINE L1 -26 6140 5423 1096 163 0 0 chr15 43089097 43089263 -42606491 - AluJb SINE Alu -13 299 134 240 197 33 0 chr15 43089282 43089343 -42606411 - AluSc SINE Alu 0 299 237 1427 210 0 11 chr15 43089354 43089626 -42606128 - AluJb SINE Alu -43 269 1 2495 76 0 0 chr15 43089637 43089941 -42605813 - AluY SINE Alu -7 304 1 400 242 97 6 chr15 43089942 43090107 -42605647 - L1ME1 LINE L1 -1732 4414 4235 464 230 49 115 chr15 43090527 43090753 -42605001 - L2 LINE L2 -21 3292 3082 1590 200 23 26 chr15 43091329 43091639 -42604115 + AluJb SINE Alu 1 309 -3 188 33 0 33 chr15 43092024 43092054 -42603700 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1813 101 76 22 chr15 43092054 43092321 -42603433 - AluSp SINE Alu -23 290 6 869 198 80 16 chr15 43092324 43092511 -42603243 - MIR SINE MIR -42 220 22 218 184 0 0 chr15 43092525 43092563 -42603191 + GA-rich Low_complexity Low_complexity 1 38 0 836 263 0 0 chr15 43092645 43092803 -42602951 - AluJb SINE Alu -21 291 131 1665 152 43 23 chr15 43092803 43093105 -42602649 - AluJb SINE Alu -4 308 1 836 263 0 0 chr15 43093105 43093125 -42602629 - AluJb SINE Alu -180 132 113 1292 182 89 79 chr15 43093125 43093163 -42602591 - L1M4 LINE L1 -801 5345 5309 321 26 0 0 chr15 43093163 43093201 -42602553 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1292 182 89 79 chr15 43093201 43093262 -42602492 - L1M4 LINE L1 -837 5309 5250 878 148 0 63 chr15 43093262 43093404 -42602350 + FLAM_C SINE Alu 1 133 0 1292 182 89 79 chr15 43093404 43093415 -42602339 - L1M4 LINE L1 -896 5250 5241 2045 132 37 0 chr15 43093415 43093710 -42602044 + AluSx SINE Alu 1 306 -6 1292 182 89 79 chr15 43093710 43093936 -42601818 - L1M4 LINE L1 -905 5241 5000 698 208 23 8 chr15 43093936 43094066 -42601688 - FLAM_A SINE Alu -1 132 1 1292 182 89 79 chr15 43094066 43094117 -42601637 - L1M4 LINE L1 -1146 5000 4951 2443 67 13 0 chr15 43094228 43094527 -42601227 + AluSp SINE Alu 6 308 -5 578 212 45 15 chr15 43094532 43094664 -42601090 - Tigger1 DNA MER2_type -2031 387 252 1485 90 5 0 chr15 43094664 43094852 -42600902 + AluSg/x SINE Alu 109 297 -13 4753 202 54 65 chr15 43094854 43095210 -42600544 - L1M LINE L1 -825 5321 4963 1740 154 61 0 chr15 43095210 43095503 -42600251 - AluSx SINE Alu -1 311 1 1654 174 10 7 chr15 43095510 43095798 -42599956 - AluJo SINE Alu -23 289 1 4753 202 54 65 chr15 43095798 43096439 -42599315 - L1M LINE L1 -1189 4957 4311 2425 94 0 0 chr15 43096439 43096747 -42599007 - AluY SINE Alu -3 308 1 4753 202 54 65 chr15 43096747 43097209 -42598545 - L1M LINE L1 -1835 4311 3879 1568 140 19 72 chr15 43097209 43097516 -42598238 + AluJb SINE Alu 1 291 -21 4753 202 54 65 chr15 43097516 43097652 -42598102 - L1M LINE L1 -2267 3879 3743 2199 124 3 0 chr15 43097664 43097962 -42597792 + AluSx SINE Alu 1 299 -13 1668 153 0 8 chr15 43097967 43098222 -42597532 + AluJb SINE Alu 35 287 -25 1269 114 5 16 chr15 43098233 43098417 -42597337 + AluSx SINE Alu 1 182 -130 2386 98 0 16 chr15 43098452 43098767 -42596987 + AluSg SINE Alu 1 310 0 1783 157 7 17 chr15 43098841 43099134 -42596620 - AluJo SINE Alu -11 301 12 814 143 0 8 chr15 43099156 43099282 -42596472 - FLAM_C SINE Alu -18 125 1 403 241 113 45 chr15 43099282 43099415 -42596339 - MIR SINE MIR -21 241 100 2256 47 43 0 chr15 43100555 43100832 -42594922 - AluY SINE Alu -22 289 1 763 248 63 0 chr15 43101137 43101343 -42594411 + MIR SINE MIR 44 262 0 191 353 20 80 chr15 43101342 43101492 -42594262 + L2 LINE L2 2987 3127 -145 * 203 184 0 0 chr15 43101549 43101587 -42594167 + L2 LINE L2 3265 3302 -11 250 352 109 16 chr15 43102373 43102501 -42593253 - L2 LINE L2 -16 3256 3117 297 184 357 10 chr15 43102519 43102617 -42593137 + L2 LINE L2 3182 3313 0 2265 90 0 7 chr15 43102905 43103193 -42592561 - AluSc SINE Alu -22 287 2 287 310 210 15 chr15 43103771 43104219 -42591535 + L2 LINE L2 2717 3259 -54 839 137 0 58 chr15 43104403 43104542 -42591212 - FLAM_C SINE Alu 0 133 3 238 311 59 25 chr15 43105208 43105327 -42590427 - MIR SINE MIR -131 131 9 273 29 0 0 chr15 43105718 43105752 -42590002 + (TG)n Simple_repeat Simple_repeat 2 35 0 1116 146 6 0 chr15 43105840 43106004 -42589750 + AluJb SINE Alu 138 302 -10 1988 157 0 0 chr15 43106011 43106304 -42589450 + AluJb SINE Alu 3 295 -17 2065 93 14 4 chr15 43106335 43106649 -42589105 + AluSp SINE Alu 1 317 0 1190 112 0 6 chr15 43106725 43106894 -42588860 - AluSg/x SINE Alu -16 296 129 732 239 0 38 chr15 43106894 43107053 -42588701 + Tigger7 DNA MER2_type 115 267 -2220 560 157 0 49 chr15 43107051 43107153 -42588601 + Tigger7 DNA MER2_type 2491 2587 0 * 1604 66 0 5 chr15 43107682 43107880 -42587874 - AluY SINE Alu -9 302 106 2205 103 23 23 chr15 43107880 43108070 -42587684 - AluSx SINE Alu -2 310 118 342 45 0 0 chr15 43108070 43108114 -42587640 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2205 103 23 23 chr15 43108114 43108233 -42587521 - AluSx SINE Alu -193 119 1 1829 172 0 3 chr15 43108686 43109002 -42586752 - AluJo SINE Alu 0 315 1 888 189 0 0 chr15 43109034 43109187 -42586567 + FRAM SINE Alu 1 151 -25 2302 85 7 3 chr15 43110056 43110351 -42585403 + AluSc SINE Alu 1 296 -13 2075 113 0 3 chr15 43110504 43110814 -42584940 - AluY SINE Alu 0 309 1 587 251 110 10 chr15 43110837 43111100 -42584654 - L1MC4 LINE L1 -1 8041 7636 877 214 17 28 chr15 43111276 43111454 -42584300 + MER5B DNA MER1_type 1 176 -2 251 296 37 25 chr15 43111572 43111653 -42584101 - L2 LINE L2 -5 3267 3186 243 337 20 20 chr15 43111674 43111775 -42583979 + MIR SINE MIR 20 120 -142 909 304 85 31 chr15 43111778 43112259 -42583495 + L2 LINE L2 2806 3312 -1 303 284 68 88 chr15 43112844 43112873 -42582881 - MIR SINE MIR -81 181 153 842 144 0 50 chr15 43112873 43113012 -42582742 - FLAM_C SINE Alu 0 133 2 303 284 68 88 chr15 43113012 43113130 -42582624 - MIR SINE MIR -109 153 37 2275 91 0 0 chr15 43113597 43113883 -42581871 + AluSx SINE Alu 1 286 -26 273 218 0 0 chr15 43114233 43114288 -42581466 + MIR SINE MIR 182 236 -26 232 104 0 90 chr15 43114308 43114375 -42581379 + (TTTTTA)n Simple_repeat Simple_repeat 2 62 0 386 198 243 0 chr15 43114392 43114503 -42581251 - MIR SINE MIR -75 187 50 1626 117 59 44 chr15 43114525 43114798 -42580956 - AluSx SINE Alu -22 290 14 329 307 56 39 chr15 43114844 43115023 -42580731 - L2 LINE L2 -240 3073 2892 241 213 0 0 chr15 43115020 43115067 -42580687 + L2 LINE L2 3023 3069 -244 * 1083 212 28 5 chr15 43115069 43115281 -42580473 + AluJb SINE Alu 1 217 -95 529 220 78 7 chr15 43115282 43115415 -42580339 + L2 LINE L2 3107 3249 -64 475 376 48 16 chr15 43115415 43115465 -42580289 - MER91A DNA MER1_type 0 196 149 2207 102 3 29 chr15 43115465 43115780 -42579974 + AluSp SINE Alu 2 308 -5 475 376 48 16 chr15 43115780 43115918 -42579836 - MER91A DNA MER1_type -47 149 2 268 271 29 0 chr15 43115922 43115992 -42579762 + L2 LINE L2 3242 3313 0 2382 69 9 38 chr15 43116199 43116518 -42579236 - AluY SINE Alu -1 310 1 1859 108 24 0 chr15 43118034 43118285 -42577469 + AluSp SINE Alu 45 301 -12 2371 67 0 0 chr15 43118667 43118951 -42576803 + AluY SINE Alu 1 284 -27 281 241 121 9 chr15 43119357 43119473 -42576281 + HAL1 LINE L1 1642 1770 -737 949 134 0 108 chr15 43119503 43119689 -42576065 + AluSg/x SINE Alu 134 299 -10 285 128 0 0 chr15 43119715 43119762 -42575992 + (TA)n Simple_repeat Simple_repeat 1 47 0 1171 114 0 0 chr15 43119773 43119931 -42575823 + AluSq SINE Alu 137 294 -19 749 166 7 43 chr15 43119940 43120079 -42575675 + FLAM_C SINE Alu 7 140 -3 371 141 44 0 chr15 43120197 43120292 -42575462 - AluS SINE Alu -20 280 220 2243 110 3 0 chr15 43120473 43120773 -42574981 + AluSg SINE Alu 1 301 -9 1657 193 0 10 chr15 43120777 43121078 -42574676 + AluJo SINE Alu 1 298 -14 247 237 140 0 chr15 43121113 43121227 -42574527 - L1M4c LINE L1 -3991 2655 2526 941 168 7 0 chr15 43121340 43121489 -42574265 + AluJb SINE Alu 152 301 -11 1638 147 50 11 chr15 43121503 43121782 -42573972 + AluSx SINE Alu 13 302 -10 2352 186 52 22 chr15 43121970 43122428 -42573326 + MLT1D LTR MaLR 4 475 -30 851 184 24 58 chr15 43122470 43122599 -42573155 - L1M4c LINE L1 -4571 2075 1954 2008 126 61 0 chr15 43122599 43122893 -42572861 - AluSx SINE Alu 0 312 1 851 184 24 58 chr15 43122893 43122969 -42572785 - L1M4c LINE L1 -4692 1954 1877 308 43 43 0 chr15 43123024 43123071 -42572683 - AluY SINE Alu 0 302 254 778 201 29 23 chr15 43123073 43123247 -42572507 - FAM SINE Alu -10 175 1 2325 176 108 108 chr15 43123248 43123971 -42571783 - L1M4c LINE L1 -5809 733 11 841 222 5 19 chr15 43123978 43124185 -42571569 + L2 LINE L2 607 810 -2504 858 221 35 0 chr15 43124202 43124374 -42571380 + MER58A DNA MER1_type 47 224 0 422 310 282 5 chr15 43124374 43124764 -42570990 + L2 LINE L2 802 1299 -2015 1402 98 13 60 chr15 43124768 43124809 -42570945 - AluSg/x SINE Alu 0 309 268 2545 70 0 0 chr15 43124809 43125110 -42570644 - AluY SINE Alu -10 301 1 1402 98 13 60 chr15 43125110 43125302 -42570452 - AluSg/x SINE Alu -41 268 87 752 120 8 0 chr15 43125302 43125419 -42570335 + AluY SINE Alu 184 301 -10 418 325 21 11 chr15 43125443 43125631 -42570123 - HAL1 LINE L1 -1681 826 637 668 254 106 91 chr15 43125699 43126163 -42569591 - HAL1 LINE L1 -1989 518 48 566 157 0 0 chr15 43126258 43126347 -42569407 + FLAM_C SINE Alu 30 118 -25 1480 143 127 27 chr15 43126352 43126653 -42569101 - AluSx SINE Alu 0 327 1 1541 103 15 0 chr15 43126681 43126885 -42568869 - AluSq SINE Alu -9 304 98 653 154 10 0 chr15 43126996 43127100 -42568654 - AluJb SINE Alu -207 105 1 696 129 0 107 chr15 43127200 43127243 -42568511 - FLAM_C SINE Alu -186 126 80 2258 92 0 3 chr15 43127243 43127549 -42568205 - AluSc SINE Alu 0 305 1 696 129 0 107 chr15 43127549 43127644 -42568110 - FLAM_C SINE Alu -232 80 2 262 205 26 0 chr15 43127993 43128071 -42567683 + (TA)n Simple_repeat Simple_repeat 2 81 0 1796 164 11 7 chr15 43128090 43128377 -42567377 + AluSx SINE Alu 11 298 -14 562 324 32 9 chr15 43129074 43129293 -42566461 + MIR SINE MIR 11 234 -28 180 0 0 0 chr15 43129302 43129322 -42566432 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1906 128 42 21 chr15 43129758 43130047 -42565707 + AluSp SINE Alu 4 298 -15 807 189 0 0 chr15 43130054 43130197 -42565557 + FLAM_C SINE Alu 1 143 0 418 179 0 0 chr15 43130243 43130321 -42565433 - AluS SINE Alu -2 310 233 956 181 44 58 chr15 43130422 43130473 -42565281 + AluJb SINE Alu 78 128 -184 1971 109 53 7 chr15 43130473 43130757 -42564997 - AluSx SINE Alu -15 297 1 956 181 44 58 chr15 43130757 43130931 -42564823 + AluJb SINE Alu 128 300 -12 271 263 26 0 chr15 43130942 43131018 -42564736 + L1MC/D LINE L1 5703 5780 -2028 1886 156 7 3 chr15 43131043 43131331 -42564423 + AluSx SINE Alu 1 289 -23 1722 142 39 39 chr15 43131380 43131690 -42564064 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr15 43132138 43132161 -42563593 + AT_rich Low_complexity Low_complexity 1 23 0 1828 154 31 10 chr15 43132274 43132567 -42563187 - AluJb SINE Alu -13 299 1 1911 159 0 17 chr15 43133082 43133384 -42562370 - AluSx SINE Alu -15 297 1 717 259 82 62 chr15 43133427 43133491 -42562263 + MLT1K LTR MaLR 230 291 -297 2357 38 108 0 chr15 43133491 43133778 -42561976 + AluYb8 SINE Alu 1 318 0 717 259 82 62 chr15 43133778 43133824 -42561930 + MLT1K LTR MaLR 291 335 -253 2372 96 0 3 chr15 43133824 43134126 -42561628 + AluSx SINE Alu 1 301 -11 717 259 82 62 chr15 43134126 43134366 -42561388 + MLT1K LTR MaLR 335 588 0 346 294 160 0 chr15 43134370 43134489 -42561265 - MIR3 SINE MIR -37 171 34 2087 125 0 10 chr15 43134900 43135196 -42560558 - AluSg SINE Alu -13 297 5 481 289 27 0 chr15 43135197 43135346 -42560408 + L2 LINE L2 2908 3060 -253 216 289 36 36 chr15 43135440 43135523 -42560231 + L2 LINE L2 3183 3265 -7 1949 150 7 3 chr15 43136868 43137162 -42558592 - AluSx SINE Alu -17 295 1 26 30 0 0 chr15 43137216 43137249 -42558505 + AT_rich Low_complexity Low_complexity 1 33 0 466 229 122 86 chr15 43137389 43137489 -42558265 - L1MC/D LINE L1 -2056 5752 5657 405 0 0 0 chr15 43137489 43137534 -42558220 + (TA)n Simple_repeat Simple_repeat 1 45 0 466 229 122 86 chr15 43137534 43137770 -42557984 - L1MC/D LINE L1 -2151 5657 5404 252 0 0 0 chr15 43137915 43137943 -42557811 + (T)n Simple_repeat Simple_repeat 1 28 0 474 250 24 8 chr15 43138071 43138195 -42557559 + L2 LINE L2 3184 3309 -4 378 333 78 0 chr15 43138506 43138659 -42557095 + L2 LINE L2 2850 3014 -258 1633 162 20 40 chr15 43138787 43138915 -42556839 + AluSg SINE Alu 1 130 -180 2495 77 0 0 chr15 43138915 43139226 -42556528 + AluY SINE Alu 1 311 0 1633 162 20 40 chr15 43139226 43139400 -42556354 + AluSg SINE Alu 130 297 -13 245 182 0 15 chr15 43139402 43139468 -42556286 + GA-rich Low_complexity Low_complexity 4 68 0 25 31 0 0 chr15 43139882 43139914 -42555840 + AT_rich Low_complexity Low_complexity 1 32 0 385 325 73 5 chr15 43140013 43140204 -42555550 - MIR SINE MIR -12 250 47 234 322 11 44 chr15 43140485 43140575 -42555179 + L3 LINE CR1 205 291 -1286 546 295 98 4 chr15 43140618 43140852 -42554902 + MIR SINE MIR 3 258 -4 597 294 43 30 chr15 43141035 43141270 -42554484 + MIR SINE MIR 24 261 -1 2410 70 0 55 chr15 43141457 43141785 -42553969 - AluY SINE Alu 0 311 2 2181 114 10 3 chr15 43142012 43142310 -42553444 - AluSq SINE Alu -13 300 1 2248 100 3 3 chr15 43142460 43142761 -42552993 + AluSg1 SINE Alu 1 301 -8 832 289 95 27 chr15 43142994 43143361 -42552393 + L3 LINE CR1 312 703 -874 649 260 109 57 chr15 43143361 43143534 -42552220 - MLT1K LTR MaLR 0 588 394 2328 84 0 0 chr15 43143534 43143871 -42551883 - AluY SINE Alu 0 337 1 649 260 109 57 chr15 43143871 43143961 -42551793 - MLT1K LTR MaLR -194 394 310 505 273 45 45 chr15 43144261 43144459 -42551295 - MIR SINE MIR -8 254 57 2443 64 0 58 chr15 43144463 43144793 -42550961 - AluY SINE Alu 0 311 1 1506 176 32 35 chr15 43144861 43145027 -42550727 - AluJo SINE Alu -21 291 125 2183 98 41 3 chr15 43145027 43145322 -42550432 + AluSg SINE Alu 1 306 -4 1506 176 32 35 chr15 43145322 43145439 -42550315 - AluJo SINE Alu -187 125 9 920 77 43 0 chr15 43145481 43145598 -42550156 + AluSq/x SINE Alu 25 146 -167 2259 82 4 4 chr15 43145598 43145878 -42549876 + AluSp SINE Alu 1 280 -33 327 34 17 34 chr15 43145879 43145938 -42549816 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 526 177 159 129 chr15 43145941 43146238 -42549516 + Charlie1 DNA MER1_type 2268 2555 -206 2228 119 0 0 chr15 43146238 43146541 -42549213 - AluSq SINE Alu -10 303 1 526 177 159 129 chr15 43146541 43146589 -42549165 + Charlie1 DNA MER1_type 2555 2600 -161 2305 116 7 0 chr15 43146589 43146899 -42548855 - AluSx SINE Alu 0 312 1 526 177 159 129 chr15 43146899 43146992 -42548762 + Charlie1 DNA MER1_type 2600 2720 -41 1571 224 50 36 chr15 43146993 43147409 -42548345 - L1MD2 LINE L1 -15 6344 5923 270 136 0 0 chr15 43147409 43147453 -42548301 + (TG)n Simple_repeat Simple_repeat 2 45 0 1647 185 11 3 chr15 43147454 43147741 -42548013 - AluJo SINE Alu -23 289 1 986 50 19 25 chr15 43147769 43147928 -42547826 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1599 114 102 8 chr15 43147929 43148051 -42547703 - AluSg SINE Alu -41 269 160 189 0 0 0 chr15 43148051 43148072 -42547682 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1599 114 102 8 chr15 43148072 43148195 -42547559 - AluSg SINE Alu -150 160 1 747 82 36 0 chr15 43148200 43148310 -42547444 - AluSq/x SINE Alu -187 125 12 697 159 127 0 chr15 43148435 43148561 -42547193 + FRAM SINE Alu 11 152 -24 1630 140 7 56 chr15 43148614 43148739 -42547015 + AluJo SINE Alu 17 147 -165 1720 94 30 60 chr15 43148739 43149037 -42546717 + L1PA13 LINE L1 5875 6163 0 1630 140 7 56 chr15 43149037 43149196 -42546558 + AluJo SINE Alu 147 287 -25 2355 84 0 19 chr15 43150270 43150578 -42545176 - AluSg1 SINE Alu -7 302 1 2415 71 0 7 chr15 43150695 43150992 -42544762 - AluY SINE Alu -16 295 1 183 152 0 0 chr15 43151171 43151217 -42544537 + T-rich Low_complexity Low_complexity 1 46 0 2349 104 0 0 chr15 43151277 43151575 -42544179 + AluSx SINE Alu 2 299 -13 1810 153 43 7 chr15 43151583 43151884 -42543870 + AluJb SINE Alu 1 312 0 2208 92 7 3 chr15 43152098 43152391 -42543363 - AluSg SINE Alu -16 294 1 2034 120 30 10 chr15 43152462 43152763 -42542991 - AluSx SINE Alu -5 307 1 2316 77 6 16 chr15 43152763 43153076 -42542678 - AluY SINE Alu -1 310 1 2343 101 0 0 chr15 43153354 43153660 -42542094 - AluSg SINE Alu -4 306 1 243 0 0 0 chr15 43153660 43153687 -42542067 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1533 183 0 59 chr15 43153688 43153978 -42541776 - AluJo SINE Alu -31 281 9 2234 121 0 0 chr15 43154032 43154330 -42541424 - AluSp SINE Alu -15 298 1 1448 180 92 7 chr15 43154565 43154837 -42540917 - AluJo SINE Alu -17 295 1 688 158 9 0 chr15 43155059 43155173 -42540581 - AluJ SINE Alu -8 304 190 4208 120 37 69 chr15 43155173 43155984 -42539770 - LTR1 LTR ERV1 0 785 1 1159 136 0 94 chr15 43156024 43156237 -42539517 - AluJ SINE Alu -119 193 1 1648 200 7 26 chr15 43158288 43158593 -42537161 - AluJo SINE Alu -13 299 1 2006 80 0 0 chr15 43158725 43158963 -42536791 - AluSq SINE Alu -75 238 1 2187 132 0 0 chr15 43161699 43161995 -42533759 - AluSg SINE Alu -14 296 1 269 278 35 76 chr15 43162017 43162215 -42533539 + L2 LINE L2 3112 3301 -12 1704 123 12 8 chr15 43162216 43162469 -42533285 + AluSx SINE Alu 43 296 -16 2550 62 3 0 chr15 43162546 43162852 -42532902 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 43162852 43162875 -42532879 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 306 0 0 0 chr15 43162874 43162908 -42532846 + (GA)n Simple_repeat Simple_repeat 2 35 0 1594 86 86 9 chr15 43163910 43164160 -42531594 + AluSx SINE Alu 47 313 0 359 234 172 8 chr15 43164432 43164560 -42531194 + MIR3 SINE MIR 16 164 -44 1063 176 0 0 chr15 43164593 43164769 -42530985 - FRAM SINE Alu 0 176 1 601 260 169 62 chr15 43165273 43165611 -42530143 - MLT1J LTR MaLR -102 409 36 2085 92 92 0 chr15 43165932 43166215 -42529539 - AluSx SINE Alu -1 311 3 550 168 69 8 chr15 43166278 43166409 -42529345 - L1MDa LINE L1 -4166 2374 2236 483 157 12 0 chr15 43166410 43166493 -42529261 - AluSx SINE Alu -15 294 211 770 176 0 0 chr15 43166493 43166612 -42529142 - AluSx SINE Alu -192 120 2 2327 85 3 38 chr15 43167373 43167689 -42528065 - AluSp SINE Alu -8 305 1 512 153 51 134 chr15 43167826 43167887 -42527867 + MER58B DNA MER1_type 38 102 -2318 1333 176 22 99 chr15 43167887 43168199 -42527555 - AluJb SINE Alu -24 288 1 512 153 51 134 chr15 43168199 43168294 -42527460 + MER58B DNA MER1_type 102 181 -2239 1994 117 57 10 chr15 43168315 43168613 -42527141 - AluSx SINE Alu 0 312 1 1495 159 45 74 chr15 43168614 43168929 -42526825 - AluJo SINE Alu -12 300 1 226 0 0 0 chr15 43168983 43169008 -42526746 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 1871 163 3 0 chr15 43169008 43169291 -42526463 - AluJb SINE Alu -28 284 1 770 175 0 8 chr15 43169296 43169422 -42526332 - FLAM_C SINE Alu -16 127 3 713 213 50 0 chr15 43169424 43169565 -42526189 + MER58B DNA MER1_type 170 317 -24 1245 81 0 38 chr15 43169569 43169754 -42526000 + AluSg/x SINE Alu 129 306 -6 367 113 14 28 chr15 43169806 43169877 -42525877 + MER3 DNA MER1_type 140 209 0 238 286 0 0 chr15 43169894 43169950 -42525804 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 561 189 28 0 chr15 43171283 43171389 -42524365 + MIR3 SINE MIR 98 206 -2 3504 214 72 20 chr15 43172755 43173838 -42521916 - L1ME3A LINE L1 -9 6161 4970 341 86 17 0 chr15 43173838 43173896 -42521858 + (TA)n Simple_repeat Simple_repeat 2 60 0 3504 214 72 20 chr15 43173896 43174328 -42521426 - L1ME3A LINE L1 -1200 4970 4562 1764 171 3 3 chr15 43174457 43174756 -42520998 + AluJb SINE Alu 1 299 -13 832 128 8 23 chr15 43174823 43174956 -42520798 + FLAM_C SINE Alu 3 133 -10 1853 158 98 62 chr15 43175147 43175596 -42520158 - MLT1C LTR MaLR 0 467 3 240 35 0 0 chr15 43175755 43175784 -42519970 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1526 102 4 21 chr15 43175787 43176023 -42519731 - AluSc SINE Alu -36 273 42 728 173 8 15 chr15 43176043 43176176 -42519578 - AluJo SINE Alu -175 137 6 2353 67 13 0 chr15 43177059 43177357 -42518397 - AluSp SINE Alu -11 302 1 557 250 32 39 chr15 43177481 43177637 -42518117 + MER5B DNA MER1_type 1 155 -23 1850 169 0 3 chr15 43178015 43178328 -42517426 - AluJo SINE Alu 0 312 1 1728 163 3 3 chr15 43178355 43178643 -42517111 + AluJb SINE Alu 1 288 -24 1666 157 10 37 chr15 43179657 43179951 -42515803 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 43179968 43179998 -42515756 + AT_rich Low_complexity Low_complexity 1 30 0 1557 174 51 20 chr15 43180059 43180352 -42515402 + AluJo SINE Alu 1 302 0 1524 191 0 0 chr15 43180790 43180804 -42514950 - AluJb SINE Alu -39 273 260 964 128 0 17 chr15 43180804 43180976 -42514778 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 1524 191 0 0 chr15 43180976 43181233 -42514521 - AluJb SINE Alu -51 261 2 30 27 0 0 chr15 43181278 43181315 -42514439 + AT_rich Low_complexity Low_complexity 1 37 0 2935 174 23 7 chr15 43181329 43182056 -42513698 + L1MB5 LINE L1 5086 5826 -348 841 133 0 8 chr15 43182060 43182188 -42513566 + FLAM_C SINE Alu 6 132 -11 1846 152 0 13 chr15 43182192 43182502 -42513252 + AluSx SINE Alu 1 306 -6 2359 79 0 3 chr15 43182502 43182806 -42512948 + AluSx SINE Alu 3 305 -7 210 170 0 21 chr15 43182944 43182991 -42512763 + (CA)n Simple_repeat Simple_repeat 1 46 0 1857 158 3 6 chr15 43183600 43183911 -42511843 + AluJb SINE Alu 1 310 -2 305 219 41 0 chr15 43184019 43184092 -42511662 - L2 LINE L2 0 3313 3238 2406 56 3 0 chr15 43184489 43184793 -42510961 + AluY SINE Alu 2 306 -5 657 183 0 17 chr15 43184933 43185048 -42510706 + FLAM_A SINE Alu 4 116 -17 1682 158 11 7 chr15 43186224 43186503 -42509251 - AluSx SINE Alu -22 290 11 323 183 183 12 chr15 43186516 43186598 -42509156 - L1MC4 LINE L1 -1333 6709 6614 580 143 0 11 chr15 43186947 43187038 -42508716 + AluJ/FLAM SINE Alu 2 91 -221 1713 154 7 7 chr15 43187042 43187328 -42508426 + AluSc SINE Alu 1 286 -23 227 98 0 0 chr15 43187445 43187486 -42508268 + AluSc SINE Alu 263 303 0 1352 147 127 27 chr15 43187515 43187816 -42507938 + AluSx SINE Alu 1 327 0 574 157 0 0 chr15 43187821 43187910 -42507844 - FLAM_C SINE Alu -25 118 30 661 254 106 91 chr15 43188005 43188469 -42507285 + HAL1 LINE L1 48 518 -1989 405 314 16 21 chr15 43188537 43188728 -42507026 + HAL1 LINE L1 637 826 -1681 24 0 0 0 chr15 43188728 43188752 -42507002 + AT_rich Low_complexity Low_complexity 1 24 0 348 138 0 0 chr15 43188752 43188810 -42506944 - Alu SINE Alu 0 302 245 445 297 129 19 chr15 43189614 43189823 -42505931 + MIR SINE MIR 21 252 -10 2407 61 0 0 chr15 43190994 43191289 -42504465 - AluY SINE Alu -16 295 1 180 0 0 0 chr15 43191452 43191472 -42504282 + (A)n Simple_repeat Simple_repeat 1 20 0 754 140 0 0 chr15 43192109 43192216 -42503538 - U6 snRNA snRNA 0 107 1 2498 49 0 3 chr15 43192246 43192551 -42503203 - AluY SINE Alu -7 304 1 2311 79 3 3 chr15 43192579 43192882 -42502872 - AluSp SINE Alu -10 303 1 626 202 57 0 chr15 43193365 43193489 -42502265 - FLAM_A SINE Alu -1 132 2 22 0 0 0 chr15 43193489 43193511 -42502243 + AT_rich Low_complexity Low_complexity 1 22 0 2128 126 0 0 chr15 43193511 43193821 -42501933 + AluSx SINE Alu 1 310 -2 813 255 159 49 chr15 43194002 43194493 -42501261 - L1MC4a LINE L1 -1849 5959 5415 2010 125 13 0 chr15 43194501 43194804 -42500950 - AluSx SINE Alu -5 307 1 2275 109 0 0 chr15 43195177 43195489 -42500265 + AluSx SINE Alu 1 312 0 677 115 31 0 chr15 43196255 43196351 -42499403 + AluSq/x SINE Alu 36 134 -178 647 169 84 0 chr15 43196351 43196505 -42499249 + Charlie1 DNA MER1_type 2544 2710 -51 882 185 26 0 chr15 43196507 43196658 -42499096 - AluJb SINE Alu -18 294 140 241 152 0 0 chr15 43196750 43196783 -42498971 - Alu SINE Alu -254 45 13 2192 92 7 0 chr15 43196815 43197108 -42498646 + AluSp SINE Alu 1 295 -18 321 105 0 53 chr15 43197109 43197166 -42498588 + Charlie1 DNA MER1_type 2707 2760 -1 231 396 32 0 chr15 43197493 43197647 -42498107 + L2 LINE L2 2512 2670 -644 2202 90 0 0 chr15 43197690 43197978 -42497776 - AluSc SINE Alu -21 288 1 2082 114 3 7 chr15 43198027 43198335 -42497419 - AluSx SINE Alu -5 307 1 419 214 36 7 chr15 43198510 43198650 -42497104 + GA-rich Low_complexity Low_complexity 4 147 0 227 427 0 0 chr15 43198831 43198913 -42496841 + C-rich Low_complexity Low_complexity 1 82 0 325 329 19 13 chr15 43198992 43199150 -42496604 + CT-rich Low_complexity Low_complexity 1 159 0 2296 78 7 3 chr15 43199322 43199629 -42496125 - AluSp SINE Alu -5 308 1 407 205 26 0 chr15 43199633 43199711 -42496043 - FLAM SINE Alu -3 130 51 671 175 0 0 chr15 43199714 43199817 -42495937 - AluJb SINE Alu -209 103 1 1330 176 5 0 chr15 43199853 43200075 -42495679 - L1MDa LINE L1 -6300 240 18 2088 106 6 16 chr15 43200562 43200874 -42494880 - AluSp SINE Alu -4 309 1 313 309 82 10 chr15 43201047 43201144 -42494610 + MIR SINE MIR 21 124 -84 2100 91 3 13 chr15 43201146 43201454 -42494300 - AluY SINE Alu -6 305 1 778 152 0 0 chr15 43201455 43201567 -42494187 - AluSq/x SINE Alu -179 134 23 1364 157 25 91 chr15 43201611 43201770 -42493984 - AluSx SINE Alu -15 297 168 2144 102 13 0 chr15 43201770 43202073 -42493681 - AluSp SINE Alu -6 307 1 1364 157 25 91 chr15 43202073 43202231 -42493523 - AluSx SINE Alu -144 168 1 200 250 66 26 chr15 43202304 43202380 -42493374 - MIR SINE MIR -66 142 64 1907 129 3 0 chr15 43203468 43203754 -42492000 - AluSx SINE Alu -25 287 1 1827 190 239 61 chr15 43203992 43204660 -42491094 + L2 LINE L2 1980 2766 -548 2023 122 0 3 chr15 43204734 43205030 -42490724 + AluSx SINE Alu 1 295 -17 1290 207 4 0 chr15 43205076 43205332 -42490422 + AluJo SINE Alu 1 257 -55 2273 168 139 11 chr15 43205350 43205803 -42489951 + MLT1F1 LTR MaLR 50 560 -7 326 276 0 35 chr15 43205839 43205926 -42489828 - L2 LINE L2 0 3313 3230 233 356 56 0 chr15 43205950 43206040 -42489714 - L2 LINE L2 -11 3302 3208 1489 216 80 86 chr15 43206269 43206439 -42489315 - L2 LINE L2 0 3313 3144 1890 116 0 20 chr15 43206439 43206756 -42488998 + AluJb SINE Alu 1 312 0 1489 216 80 86 chr15 43206756 43207098 -42488656 - L2 LINE L2 -169 3144 2804 889 247 32 18 chr15 43207102 43207321 -42488433 - MER58A DNA MER1_type -2 222 1 1946 132 10 3 chr15 43209805 43210108 -42485646 - AluSx SINE Alu -6 306 2 21 0 0 0 chr15 43210609 43210630 -42485124 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr15 43211441 43211469 -42484285 + (TA)n Simple_repeat Simple_repeat 1 28 0 189 242 91 15 chr15 43215179 43215245 -42480509 - L3 LINE CR1 -831 746 676 213 39 0 0 chr15 43215721 43215747 -42480007 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 255 133 0 0 chr15 43216028 43216073 -42479681 + (CA)n Simple_repeat Simple_repeat 2 46 0 752 269 37 21 chr15 43216731 43216973 -42478781 + MIR SINE MIR 5 250 -12 2075 110 10 0 chr15 43217265 43217566 -42478188 + AluSp SINE Alu 1 304 -9 255 218 18 100 chr15 43217706 43217816 -42477938 + L2 LINE L2 3167 3267 -46 369 317 75 8 chr15 43219126 43219246 -42476508 + MIR SINE MIR 16 143 -65 1677 171 4 4 chr15 43219298 43219579 -42476175 + AluJo SINE Alu 27 307 -5 2194 109 3 0 chr15 43219583 43219864 -42475890 + AluY SINE Alu 1 301 -10 208 0 0 0 chr15 43219864 43219887 -42475867 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 2194 109 3 0 chr15 43219887 43219899 -42475855 + AluY SINE Alu 301 311 0 2324 107 0 22 chr15 43219901 43220220 -42475534 + AluSx SINE Alu 1 312 0 260 315 56 19 chr15 43223022 43223130 -42472624 - MIR SINE MIR -78 130 19 2380 94 0 0 chr15 43223652 43223951 -42471803 - AluSc SINE Alu -10 299 1 1886 101 0 0 chr15 43223997 43224244 -42471510 - AluSg SINE Alu -17 293 47 1230 181 9 17 chr15 43224426 43224658 -42471096 - AluJo SINE Alu -82 230 1 368 241 113 45 chr15 43224658 43224791 -42470963 - MIR SINE MIR -21 241 100 180 152 0 0 chr15 43225397 43225430 -42470324 + T-rich Low_complexity Low_complexity 1 33 0 2293 47 43 0 chr15 43225932 43226209 -42469545 - AluY SINE Alu -22 289 1 684 252 63 0 chr15 43226514 43226720 -42469034 + MIR SINE MIR 44 262 0 192 184 0 0 chr15 43226926 43226964 -42468790 + L2 LINE L2 3265 3302 -11 210 352 109 16 chr15 43227750 43227878 -42467876 - L2 LINE L2 -16 3256 3117 269 180 0 0 chr15 43227944 43227994 -42467760 + L2 LINE L2 3264 3313 0 2285 90 0 7 chr15 43228282 43228570 -42467184 - AluSc SINE Alu -22 287 2 218 323 175 9 chr15 43229148 43229371 -42466383 + L2 LINE L2 2717 2976 -338 788 137 0 58 chr15 43229780 43229919 -42465835 - FLAM_C SINE Alu 0 133 3 200 311 59 25 chr15 43230585 43230704 -42465050 - MIR SINE MIR -131 131 9 345 24 0 0 chr15 43231094 43231136 -42464618 + (TG)n Simple_repeat Simple_repeat 2 43 0 1127 146 6 0 chr15 43231224 43231388 -42464366 + AluJb SINE Alu 138 302 -10 2006 157 0 0 chr15 43231395 43231688 -42464066 + AluJb SINE Alu 3 295 -17 2368 85 7 3 chr15 43231719 43232025 -42463729 + AluSp SINE Alu 1 307 -6 650 107 223 0 chr15 43232099 43232211 -42463543 + AluJb SINE Alu 160 296 -16 1025 157 127 23 chr15 43232211 43232476 -42463278 + L1MB4 LINE L1 5823 6081 -99 22 0 0 0 chr15 43232549 43232571 -42463183 + AT_rich Low_complexity Low_complexity 1 22 0 1740 167 3 21 chr15 43233278 43233565 -42462189 + AluJo SINE Alu 13 294 -18 352 256 111 47 chr15 43233584 43233756 -42461998 + MIR SINE MIR 36 218 -44 207 0 0 0 chr15 43233807 43233830 -42461924 + (A)n Simple_repeat Simple_repeat 1 23 0 198 176 0 0 chr15 43234434 43234485 -42461269 + (CA)n Simple_repeat Simple_repeat 1 51 0 29 47 0 0 chr15 43234933 43234976 -42460778 + AT_rich Low_complexity Low_complexity 1 43 0 723 171 0 8 chr15 43235069 43235192 -42460562 + FLAM_A SINE Alu 11 132 -10 1927 115 3 58 chr15 43235194 43235507 -42460247 + AluSx SINE Alu 12 307 -5 1872 140 55 0 chr15 43237092 43237385 -42458369 - AluSx SINE Alu -3 309 1 26 0 0 0 chr15 43237385 43237411 -42458343 + AT_rich Low_complexity Low_complexity 1 26 0 806 193 0 77 chr15 43237411 43237450 -42458304 - AluJo SINE Alu -140 172 132 1993 157 3 7 chr15 43237450 43237749 -42458005 - AluJb SINE Alu -14 298 1 806 193 0 77 chr15 43237749 43237890 -42457864 - AluJo SINE Alu -180 132 6 769 90 0 0 chr15 43237949 43238049 -42457705 + HY3 scRNA scRNA 1 100 -1 2381 35 108 0 chr15 43238425 43238711 -42457043 + AluYb8 SINE Alu 2 318 0 2119 134 0 0 chr15 43238757 43239048 -42456706 + AluSx SINE Alu 1 291 -21 1054 225 14 0 chr15 43239547 43239756 -42455998 - AluJb SINE Alu 0 312 101 2600 53 0 3 chr15 43239756 43240058 -42455696 + AluSp SINE Alu 1 301 -12 682 173 0 0 chr15 43240110 43240214 -42455540 + MER1B DNA MER1_type 21 124 -173 2045 125 0 26 chr15 43240218 43240521 -42455233 + AluSx SINE Alu 1 295 -17 1477 178 46 4 chr15 43240546 43240805 -42454949 - AluJo SINE Alu -29 283 14 3507 141 24 19 chr15 43240809 43241426 -42454328 - L1MD1 LINE L1 -306 5936 5317 22 56 0 0 chr15 43241426 43241462 -42454292 + AT_rich Low_complexity Low_complexity 1 36 0 1411 184 86 4 chr15 43241523 43241790 -42453964 - AluJo SINE Alu -23 289 1 467 219 109 22 chr15 43241835 43241972 -42453782 + LTR67 LTR ERVL 409 557 0 1841 122 0 96 chr15 43242063 43242408 -42453346 + AluJb SINE Alu 1 312 0 2270 87 0 0 chr15 43242409 43242685 -42453069 + AluSx SINE Alu 1 276 -36 2469 80 0 13 chr15 43242685 43242999 -42452755 + AluSp SINE Alu 2 311 -2 313 136 119 0 chr15 43243184 43243243 -42452511 - MER106A DNA MER1_type -115 121 56 2257 70 0 43 chr15 43243283 43243585 -42452169 + AluSp SINE Alu 1 289 -24 24 77 0 0 chr15 43243620 43243672 -42452082 + AT_rich Low_complexity Low_complexity 1 52 0 2219 105 10 10 chr15 43243683 43243987 -42451767 + AluSq SINE Alu 1 304 -9 2285 116 0 0 chr15 43244199 43244502 -42451252 - AluSx SINE Alu -9 303 1 237 125 0 0 chr15 43244534 43244566 -42451188 + Alu SINE Alu 13 44 -259 1594 158 4 22 chr15 43294895 43295168 -42400586 + AluJo SINE Alu 1 268 -44 2374 62 10 0 chr15 43295174 43295478 -42400276 - AluY SINE Alu -4 307 1 1790 158 23 3 chr15 43295512 43295816 -42399938 + AluJo SINE Alu 1 310 -2 880 138 0 0 chr15 43295984 43296114 -42399640 + AluSq/x SINE Alu 1 130 -182 2330 91 0 0 chr15 43296115 43296422 -42399332 + AluY SINE Alu 1 307 -4 2349 89 0 0 chr15 43296633 43296935 -42398819 - AluSc SINE Alu -7 302 1 2042 133 0 0 chr15 43297014 43297314 -42398440 - AluSx SINE Alu -9 303 4 2002 128 3 0 chr15 43297400 43297697 -42398057 + AluSx SINE Alu 1 298 -14 477 152 86 0 chr15 43297707 43297812 -42397942 + L1MB4 LINE L1 6061 6174 -6 2545 27 7 0 chr15 43297837 43298135 -42397619 + AluY SINE Alu 1 300 -11 269 253 48 24 chr15 43298290 43298373 -42397381 + MIR3 SINE MIR 6 90 -118 583 188 0 47 chr15 43298373 43298501 -42397253 - MLT1D LTR MaLR 0 505 384 6665 86 8 15 chr15 43298601 43300066 -42395688 + SVA Other Other 206 1386 0 2140 100 0 0 chr15 43300096 43300400 -42395354 + AluSg SINE Alu 1 304 0 353 281 19 0 chr15 43300438 43300598 -42395156 + L1MEc LINE L1 726 888 -5508 1613 129 83 8 chr15 43300605 43300869 -42394885 + AluSx SINE Alu 7 290 -22 819 170 47 61 chr15 43300869 43300931 -42394823 + L1M4 LINE L1 3696 3757 -2389 1697 135 34 34 chr15 43300931 43301227 -42394527 + AluJo SINE Alu 1 296 -16 819 170 47 61 chr15 43301227 43301376 -42394378 + L1M4 LINE L1 3757 3904 -2242 818 102 61 14 chr15 43301479 43301626 -42394128 - AluY SINE Alu -157 154 1 342 263 44 29 chr15 43301628 43301641 -42394113 + MIR SINE MIR 65 76 -186 207 0 0 0 chr15 43301641 43301664 -42394090 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 342 263 44 29 chr15 43301664 43301787 -42393967 + MIR SINE MIR 76 203 -59 2285 78 3 0 chr15 43301839 43302133 -42393621 - AluSx SINE Alu -17 295 1 275 388 59 0 chr15 43302488 43302640 -42393114 + MIR SINE MIR 28 188 -74 1726 127 39 42 chr15 43302831 43303138 -42392616 + AluJo SINE Alu 1 306 -6 1369 121 26 124 chr15 43303337 43303607 -42392147 - Tigger3(Golem) DNA MER2_type -1 3027 2732 2201 107 3 3 chr15 43303607 43303915 -42391839 + AluSg SINE Alu 1 308 -2 1369 121 26 124 chr15 43303915 43303929 -42391825 - Tigger3(Golem) DNA MER2_type -296 2732 2718 2186 105 0 3 chr15 43303929 43304233 -42391521 + AluSx SINE Alu 3 305 -7 1369 121 26 124 chr15 43304233 43304244 -42391510 - Tigger3(Golem) DNA MER2_type -310 2718 2765 2010 97 0 28 chr15 43304244 43304562 -42391192 + AluSx SINE Alu 1 310 0 1369 121 26 124 chr15 43304562 43304609 -42391145 - Tigger3(Golem) DNA MER2_type -262 2766 2716 54 0 0 0 chr15 43304651 43304705 -42391049 + AT_rich Low_complexity Low_complexity 1 54 0 1804 138 4 7 chr15 43304705 43304981 -42390773 - AluSx SINE Alu -37 275 1 719 176 0 8 chr15 43305021 43305146 -42390608 + AluJo SINE Alu 13 136 -176 25 0 0 0 chr15 43305146 43305171 -42390583 + AT_rich Low_complexity Low_complexity 1 25 0 1634 192 38 68 chr15 43305172 43305405 -42390349 - L1M4 LINE L1 -1287 4859 4621 2166 109 3 0 chr15 43305405 43305708 -42390046 - AluY SINE Alu -6 305 2 1634 192 38 68 chr15 43305708 43305818 -42389936 - L1M4 LINE L1 -1525 4621 4509 1873 141 7 20 chr15 43305818 43306115 -42389639 + AluSx SINE Alu 1 293 -19 1634 192 38 68 chr15 43306115 43306270 -42389484 - L1M4 LINE L1 -1637 4509 4375 2072 108 7 0 chr15 43306271 43306559 -42389195 - AluSp SINE Alu -21 292 3 2333 80 0 10 chr15 43306561 43306872 -42388882 - AluY SINE Alu -3 308 1 1524 130 63 21 chr15 43306872 43307157 -42388597 - AluSp SINE Alu -16 297 1 198 0 0 0 chr15 43307158 43307180 -42388574 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1891 143 0 0 chr15 43307180 43307460 -42388294 - AluSg SINE Alu -30 280 1 1885 138 3 10 chr15 43307460 43307757 -42387997 - AluSg SINE Alu -12 298 4 850 165 0 0 chr15 43307759 43307892 -42387862 - AluJo/FLAM SINE Alu -169 133 1 2107 92 20 3 chr15 43308229 43308533 -42387221 + AluY SINE Alu 1 309 -2 286 227 120 0 chr15 43308533 43308608 -42387146 + MER97c DNA MER1_type? 95 178 -912 2322 92 0 0 chr15 43308744 43309048 -42386706 + AluSg SINE Alu 1 304 -6 748 217 159 4 chr15 43309112 43309338 -42386416 + MIR SINE MIR 2 262 0 304 205 24 0 chr15 43310021 43310104 -42385650 + L1MA10 LINE L1 6250 6334 0 953 148 46 79 chr15 43310136 43310245 -42385509 + MER2 DNA MER2_type 2 113 -232 1900 91 69 0 chr15 43310245 43310521 -42385233 + AluSx SINE Alu 1 295 -17 2176 103 3 3 chr15 43310521 43310822 -42384932 + AluSq SINE Alu 1 301 -12 953 148 46 79 chr15 43310822 43310927 -42384827 + MER2 DNA MER2_type 111 210 -135 2216 82 0 23 chr15 43314708 43315014 -42380740 + AluY SINE Alu 5 303 -8 2440 57 0 13 chr15 43315016 43315330 -42380424 + AluSg SINE Alu 1 310 0 1333 173 6 96 chr15 43315339 43315663 -42380091 + AluJo SINE Alu 1 295 -17 1656 106 29 141 chr15 43315735 43316075 -42379679 + AluYb8 SINE Alu 1 302 -6 2213 77 3 13 chr15 43316602 43316900 -42378854 - AluY SINE Alu -16 295 1 1434 148 0 0 chr15 43316936 43317146 -42378608 - AluSq SINE Alu -94 219 10 1088 150 0 11 chr15 43317157 43317337 -42378417 - AluJb SINE Alu 0 312 135 1771 140 24 10 chr15 43317748 43318040 -42377714 - AluJb SINE Alu -16 296 1 253 222 99 25 chr15 43318218 43318299 -42377455 + MER97c DNA MER1_type? 16 102 -988 1428 174 35 3 chr15 43318302 43318429 -42377325 + AluJo SINE Alu 5 127 -185 2011 125 10 0 chr15 43318429 43318726 -42377028 + AluSq SINE Alu 1 300 -13 1428 174 35 3 chr15 43318726 43318885 -42376869 + AluJo SINE Alu 127 300 -12 2460 62 0 3 chr15 43318890 43319199 -42376555 + AluY SINE Alu 1 308 -3 1507 153 29 11 chr15 43319252 43319308 -42376446 + AluY SINE Alu 1 54 -257 1515 78 10 5 chr15 43319308 43319514 -42376240 + AluSp SINE Alu 94 300 -13 1507 153 29 11 chr15 43319514 43319731 -42376023 + AluY SINE Alu 54 279 -32 895 86 16 0 chr15 43319831 43319959 -42375795 + AluSp/q SINE Alu 164 293 -20 424 36 0 0 chr15 43319998 43320053 -42375701 + AluSp/q SINE Alu 241 295 -18 336 260 33 60 chr15 43320778 43320928 -42374826 - MIR3 SINE MIR -36 172 27 2004 136 3 7 chr15 43321571 43321879 -42373875 + AluSx SINE Alu 1 307 -5 182 302 32 0 chr15 43321908 43321971 -42373783 + MIR SINE MIR 74 138 -70 1688 126 18 84 chr15 43321971 43322304 -42373450 - AluSx SINE Alu -1 311 1 1789 169 3 3 chr15 43322307 43322609 -42373145 - AluJo SINE Alu -10 302 1 405 252 148 0 chr15 43322858 43322973 -42372781 - MIR3 SINE MIR -17 191 60 1060 184 18 18 chr15 43323118 43323341 -42372413 + AluJo SINE Alu 85 307 -5 32 26 0 0 chr15 43324255 43324294 -42371460 + AT_rich Low_complexity Low_complexity 1 39 0 784 186 0 0 chr15 43324294 43324423 -42371331 - FLAM_C SINE Alu 0 133 5 2172 96 6 13 chr15 43324996 43325309 -42370445 - AluSx SINE Alu -1 311 1 1750 112 0 4 chr15 43325909 43326159 -42369595 + AluSq SINE Alu 57 305 -8 222 304 104 9 chr15 43326691 43326806 -42368948 - MIR SINE MIR -62 146 21 1393 138 43 43 chr15 43326884 43327030 -42368724 - AluJo SINE Alu -24 288 140 2182 94 3 26 chr15 43327030 43327339 -42368415 - AluSx SINE Alu -6 306 5 1393 138 43 43 chr15 43327339 43327446 -42368308 - AluJo SINE Alu -171 141 35 206 273 227 23 chr15 43327964 43328096 -42367658 + MIR3 SINE MIR 39 197 -11 208 294 222 9 chr15 43329244 43329399 -42366355 - MIR SINE MIR -62 146 10 1998 143 0 6 chr15 43330086 43330400 -42365354 + AluSx SINE Alu 1 312 0 206 281 0 0 chr15 43330585 43330642 -42365112 + MIR SINE MIR 194 250 -12 996 86 0 14 chr15 43330642 43330781 -42364973 + AluSq/x SINE Alu 1 137 -175 2326 106 0 0 chr15 43330786 43331097 -42364657 + AluSq SINE Alu 1 311 -2 328 222 162 0 chr15 43331150 43331249 -42364505 - MIR SINE MIR -50 212 98 2146 111 0 10 chr15 43331474 43331781 -42363973 - AluSc SINE Alu -5 304 1 180 277 62 15 chr15 43332218 43332283 -42363471 - MIR SINE MIR -79 183 116 909 164 13 0 chr15 43332344 43332536 -42363218 - AluJb SINE Alu 0 322 129 2196 126 7 0 chr15 43332541 43332851 -42362903 - AluSx SINE Alu 0 312 1 2322 78 7 7 chr15 43332858 43333167 -42362587 - AluSg1 SINE Alu 0 309 1 1504 141 126 15 chr15 43333167 43333436 -42362318 - AluJb SINE Alu -13 299 1 561 159 83 23 chr15 43333556 43333688 -42362066 - MIR3 SINE MIR -20 188 49 325 281 14 43 chr15 43333868 43334007 -42361747 + MIR3 SINE MIR 51 185 -23 355 264 75 1 chr15 43334482 43334599 -42361155 + MIR SINE MIR 1 128 -80 287 286 86 0 chr15 43335850 43335955 -42359799 + MIR SINE MIR 40 153 -109 2348 74 3 0 chr15 43335964 43336261 -42359493 + AluSp SINE Alu 1 298 -15 374 314 32 8 chr15 43336678 43336802 -42358952 - MIR SINE MIR -113 149 23 271 225 40 157 chr15 43336833 43336908 -42358846 + MIR SINE MIR 44 98 -164 1871 116 65 0 chr15 43336908 43337201 -42358553 + AluSx SINE Alu 1 312 0 271 225 40 157 chr15 43337201 43337291 -42358463 + MIR SINE MIR 98 197 -65 1024 155 0 0 chr15 43337294 43337455 -42358299 + FRAM SINE Alu 1 161 -15 236 214 316 20 chr15 43337823 43337921 -42357833 + MIR SINE MIR 54 180 -28 3630 170 130 17 chr15 43338599 43339374 -42356380 + MER21B LTR ERV1 1 863 0 486 0 0 0 chr15 43339506 43339560 -42356194 + (TG)n Simple_repeat Simple_repeat 2 55 0 1556 174 31 11 chr15 43339561 43339848 -42355906 - AluSx SINE Alu -10 302 10 1912 90 0 30 chr15 43341562 43341829 -42353925 + AluSc SINE Alu 39 297 -12 478 88 132 0 chr15 43341855 43341923 -42353831 - AluSg/x SINE Alu -159 151 75 963 107 51 34 chr15 43341924 43342102 -42353652 - AluJb SINE Alu -121 191 11 2249 66 23 7 chr15 43342113 43342414 -42353340 - AluY SINE Alu -5 306 1 2175 94 3 26 chr15 43342772 43343081 -42352673 - AluSp SINE Alu -9 304 3 315 313 114 24 chr15 43344604 43344770 -42350984 + MIR SINE MIR 20 200 -62 1933 90 43 0 chr15 43344893 43345164 -42350590 + AluY SINE Alu 1 286 -25 186 71 0 0 chr15 43345164 43345192 -42350562 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 2201 98 0 3 chr15 43345204 43345500 -42350254 + AluSc SINE Alu 1 295 -14 400 326 6 37 chr15 43346030 43346258 -42349496 + MIR SINE MIR 10 227 -35 300 274 32 11 chr15 43346440 43346535 -42349219 - MIR SINE MIR -87 175 79 1928 114 16 28 chr15 43346914 43347231 -42348523 - AluSq SINE Alu 0 313 1 2161 83 3 3 chr15 43348016 43348306 -42347448 - AluSg SINE Alu -7 303 14 211 267 107 0 chr15 43348322 43348397 -42347357 - L2 LINE L2 -29 3284 3202 1859 147 10 22 chr15 43349181 43349358 -42346396 - AluJb SINE Alu -2 310 132 180 0 0 0 chr15 43349358 43349378 -42346376 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2227 68 0 4 chr15 43349378 43349659 -42346095 - AluY SINE Alu -31 280 1 1859 147 10 22 chr15 43349659 43349794 -42345960 - AluJb SINE Alu -178 134 1 2177 81 17 3 chr15 43350865 43351161 -42344593 - AluSx SINE Alu -12 300 1 1503 104 5 5 chr15 43352162 43352373 -42343381 + AluSq SINE Alu 1 211 -102 265 82 82 0 chr15 43352375 43352424 -42343330 + FLAM_A SINE Alu 78 130 -3 352 277 36 0 chr15 43352424 43352507 -42343247 + L1MC4 LINE L1 6617 6702 -1340 312 279 35 12 chr15 43352481 43352567 -42343187 - L1MC4 LINE L1 -1340 6702 6615 * 264 59 0 0 chr15 43352596 43352630 -42343124 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 220 50 80 chr15 43352896 43352996 -42342758 - MIR SINE MIR -110 152 56 277 238 50 12 chr15 43353926 43354006 -42341748 - MIR3 SINE MIR -3 205 123 383 149 58 58 chr15 43354026 43354113 -42341641 - AluSg/x SINE Alu 0 302 216 666 172 69 0 chr15 43354113 43354229 -42341525 - AluSc SINE Alu -63 246 123 360 240 20 30 chr15 43355116 43355216 -42340538 - L1MC4 LINE L1 -1339 6983 1995 716 160 34 0 chr15 43355235 43355354 -42340400 - AluJb SINE Alu -176 136 14 220 319 50 64 chr15 43355364 43355505 -42340249 - MIR SINE MIR -122 140 2 1415 130 72 110 chr15 43355537 43355656 -42340098 - MER51A LTR ERV1 -9 625 503 1995 142 3 0 chr15 43355656 43355967 -42339787 + AluSx SINE Alu 1 312 0 1415 130 72 110 chr15 43355967 43356318 -42339436 - MER51A LTR ERV1 -131 503 140 2229 94 0 28 chr15 43356318 43356637 -42339117 - AluSg SINE Alu 0 310 1 2057 112 0 0 chr15 43356647 43356957 -42338797 - AluSc SINE Alu 0 310 1 1415 130 72 110 chr15 43356957 43357041 -42338713 - MER51A LTR ERV1 -503 131 1 756 152 15 8 chr15 43357185 43357317 -42338437 + L1MB8 LINE L1 6045 6177 -1 1744 158 7 7 chr15 43357317 43357615 -42338139 - AluJo SINE Alu -14 298 1 2116 111 10 0 chr15 43357728 43358034 -42337720 + AluY SINE Alu 1 309 -2 268 291 264 0 chr15 43358064 43358246 -42337508 - L2 LINE L2 -193 3120 2891 351 261 101 14 chr15 43358830 43358968 -42336786 + MIR3 SINE MIR 35 184 -24 722 82 0 0 chr15 43359429 43359527 -42336227 + AluSp/q SINE Alu 210 307 -6 246 286 0 0 chr15 43359747 43359803 -42335951 - L2 LINE L2 0 3313 3258 207 176 0 0 chr15 43360094 43360128 -42335626 + CT-rich Low_complexity Low_complexity 28 61 0 2044 99 16 26 chr15 43360391 43360703 -42335051 - AluSc SINE Alu 0 309 1 1778 146 7 17 chr15 43360703 43361004 -42334750 - AluJo SINE Alu -14 298 1 1631 127 70 42 chr15 43361154 43361438 -42334316 - AluSx SINE Alu -7 305 14 620 214 38 23 chr15 43362407 43362538 -42333216 + FLAM_A SINE Alu 1 133 0 1672 157 37 20 chr15 43362594 43362893 -42332861 - AluSx SINE Alu -8 304 1 880 134 15 0 chr15 43362894 43363028 -42332726 - AluSq/x SINE Alu -176 136 1 2091 137 0 0 chr15 43363059 43363359 -42332395 - AluSx SINE Alu -12 300 1 218 250 153 32 chr15 43363550 43363674 -42332080 + MIR SINE MIR 77 215 -47 2080 117 3 0 chr15 43363735 43364026 -42331728 - AluSx SINE Alu -18 294 3 272 323 51 16 chr15 43364153 43364296 -42331458 + MIR SINE MIR 38 153 -55 2083 98 0 0 chr15 43364663 43364984 -42330770 - AluSg SINE Alu 0 325 5 198 319 14 14 chr15 43365245 43365314 -42330440 - MIR SINE MIR -68 140 72 189 107 0 0 chr15 43365455 43365483 -42330271 + (TG)n Simple_repeat Simple_repeat 1 28 0 1368 205 0 22 chr15 43366065 43366203 -42329551 + AluJb SINE Alu 1 132 -180 2190 101 3 0 chr15 43366203 43366501 -42329253 + AluSc SINE Alu 1 299 -10 1368 205 0 22 chr15 43366501 43366635 -42329119 + AluJb SINE Alu 132 267 -45 200 350 58 58 chr15 43366660 43366719 -42329035 + MER5B DNA MER1_type 1 59 -119 1634 205 0 7 chr15 43366719 43367017 -42328737 + AluJo SINE Alu 1 296 -16 200 350 58 58 chr15 43367017 43367077 -42328677 + MER5B DNA MER1_type 58 120 -58 1874 116 7 40 chr15 43367318 43367621 -42328133 - AluSx SINE Alu -17 295 3 2098 114 3 3 chr15 43367625 43367924 -42327830 - AluSx SINE Alu -13 299 1 2181 110 3 0 chr15 43367940 43368240 -42327514 - AluSg SINE Alu -9 301 1 516 327 51 18 chr15 43368248 43368465 -42327289 + MIR SINE MIR 7 230 -32 1135 115 0 0 chr15 43368490 43368646 -42327108 + AluSg/x SINE Alu 135 290 -20 2191 102 0 0 chr15 43368646 43368941 -42326813 + AluSc SINE Alu 1 295 -14 400 303 0 0 chr15 43368951 43369040 -42326714 + L1MC4 LINE L1 6615 6703 -1339 * 401 273 23 0 chr15 43368972 43369060 -42326694 - L1MC4 LINE L1 -1339 6703 6614 1174 121 258 38 chr15 43369089 43369233 -42326521 + AluSx SINE Alu 2 113 -189 2325 85 3 0 chr15 43369233 43369539 -42326215 + AluSp SINE Alu 1 307 -6 1174 121 258 38 chr15 43369539 43369634 -42326120 + AluSx SINE Alu 113 294 -8 309 354 63 11 chr15 43370013 43370200 -42325554 - MIR SINE MIR -29 233 32 711 165 0 16 chr15 43370262 43370383 -42325371 + FLAM_C SINE Alu 2 120 -23 210 72 58 29 chr15 43370383 43370452 -42325302 + (TA)n Simple_repeat Simple_repeat 2 72 0 2213 92 33 0 chr15 43370455 43370758 -42324996 - AluSp SINE Alu 0 313 1 211 70 23 23 chr15 43370834 43370877 -42324877 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1754 158 0 0 chr15 43370879 43371152 -42324602 - AluJb SINE Alu -32 280 8 1721 166 16 19 chr15 43371160 43371473 -42324281 - AluJo SINE Alu 0 312 1 188 35 35 0 chr15 43371540 43371569 -42324185 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2264 67 0 3 chr15 43371571 43371856 -42323898 - AluY SINE Alu -22 289 6 1950 116 0 4 chr15 43371867 43372143 -42323611 - AluSx SINE Alu -8 304 30 339 320 191 11 chr15 43372219 43372397 -42323357 - L1MC4a LINE L1 -1473 6335 6126 981 234 121 34 chr15 43372400 43372738 -42323016 + MLT2E LTR ERVL 147 574 -54 2063 130 6 60 chr15 43372738 43372941 -42322813 + MER1B DNA MER1_type 1 179 -2531 2059 100 38 3 chr15 43372941 43373231 -42322523 - AluSq SINE Alu -13 300 1 2063 130 6 60 chr15 43373231 43373380 -42322374 + MER1B DNA MER1_type 179 334 -3 981 234 121 34 chr15 43373380 43373439 -42322315 + MLT2E LTR ERVL 574 626 -2 1154 272 118 54 chr15 43373548 43373770 -42321984 - L1MB7 LINE L1 -39 6145 5924 1849 260 61 16 chr15 43373770 43374377 -42321377 - L1MC4a LINE L1 -1907 5901 5268 2323 76 0 25 chr15 43374433 43374748 -42321006 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 43374838 43374861 -42320893 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 245 245 7 chr15 43375101 43375244 -42320510 + MIR3 SINE MIR 15 191 -17 1970 130 62 22 chr15 43375342 43375666 -42320088 - MER1B DNA MER1_type 0 337 1 411 320 17 29 chr15 43375907 43376082 -42319672 - MIR SINE MIR -59 203 31 699 127 0 18 chr15 43376277 43376387 -42319367 + AluJb SINE Alu 2 109 -203 2549 39 0 10 chr15 43377166 43377476 -42318278 - AluY SINE Alu -4 307 1 2075 99 10 0 chr15 43377492 43377786 -42317968 - L1PA13 LINE L1 0 6163 5867 335 253 0 22 chr15 43378144 43378235 -42317519 + MIR SINE MIR 123 211 -51 894 168 5 47 chr15 43378456 43378646 -42317108 - AluJb SINE Alu -10 302 121 2242 96 3 0 chr15 43378758 43379059 -42316695 - AluSc SINE Alu -7 302 1 194 295 211 0 chr15 43379456 43379551 -42316203 - MIR SINE MIR -111 151 37 1480 256 96 43 chr15 43379694 43380398 -42315356 + L1MC4 LINE L1 7147 7812 -230 2083 108 0 10 chr15 43380398 43380693 -42315061 + AluSg SINE Alu 1 292 -18 1480 256 96 43 chr15 43380693 43380777 -42314977 + L1MC4 LINE L1 7812 7890 -152 2139 100 7 0 chr15 43380777 43381067 -42314687 - AluSx SINE Alu -20 292 1 1480 256 96 43 chr15 43381067 43381108 -42314646 + L1MC4 LINE L1 7890 8021 -21 2162 112 3 3 chr15 43381202 43381506 -42314248 + AluSp SINE Alu 1 304 -9 265 311 99 0 chr15 43381559 43381703 -42314051 - MIR SINE MIR -67 141 15 593 201 76 57 chr15 43384092 43384356 -42311398 + MER1B DNA MER1_type 57 325 -14 360 0 0 0 chr15 43384409 43384449 -42311305 + (TG)n Simple_repeat Simple_repeat 1 40 0 1743 153 35 7 chr15 43385105 43385392 -42310362 - AluJb SINE Alu -17 295 1 582 302 47 22 chr15 43385392 43385624 -42310130 - MIR SINE MIR -5 257 20 1614 119 119 4 chr15 43385721 43385990 -42309764 + AluSg1 SINE Alu 1 300 -9 281 245 52 6 chr15 43386110 43386209 -42309545 - MIR SINE MIR -56 206 101 2506 52 0 3 chr15 43386431 43386739 -42309015 - AluY SINE Alu -4 307 1 2190 92 7 0 chr15 43386973 43387266 -42308488 - AluSq SINE Alu -18 295 1 2229 94 0 13 chr15 43387452 43387761 -42307993 - AluSx SINE Alu -7 305 1 1869 146 10 16 chr15 43387761 43388069 -42307685 - AluJb SINE Alu -5 307 1 2238 191 16 18 chr15 43388127 43388625 -42307129 - Charlie4a DNA MER1_type 0 508 12 180 293 0 81 chr15 43389605 43389704 -42306050 + MIR SINE MIR 98 188 -74 2216 106 0 10 chr15 43390205 43390517 -42305237 - AluSx SINE Alu -1 311 3 298 309 47 13 chr15 43390589 43390738 -42305016 + MIR SINE MIR 32 185 -77 364 210 37 0 chr15 43391157 43391238 -42304516 + MIR SINE MIR 31 114 -148 574 253 42 81 chr15 43391247 43391380 -42304374 - L1ME LINE L1 -563 5607 5470 2239 92 0 0 chr15 43391380 43391672 -42304082 - AluSq SINE Alu -17 296 5 574 253 42 81 chr15 43391672 43391846 -42303908 - L1ME LINE L1 -700 5470 5312 842 226 12 0 chr15 43391849 43392017 -42303737 - FRAM SINE Alu -5 171 2 1859 163 10 0 chr15 43392027 43392322 -42303432 - AluJb SINE Alu -14 298 1 266 290 23 15 chr15 43392327 43392458 -42303296 - L1ME LINE L1 -1119 5027 4896 2395 53 0 0 chr15 43392642 43392957 -42302797 - AluY SINE Alu 0 315 1 1158 114 6 6 chr15 43392959 43393134 -42302620 - AluSp SINE Alu -15 298 124 1613 173 23 16 chr15 43393202 43393509 -42302245 + AluJb SINE Alu 1 309 -3 234 0 0 0 chr15 43393610 43393636 -42302118 + (A)n Simple_repeat Simple_repeat 1 26 0 561 80 0 13 chr15 43393830 43393905 -42301849 + AluS SINE Alu 2 75 -237 239 65 0 0 chr15 43393906 43393937 -42301817 - Alu SINE Alu -271 31 1 1912 114 36 0 chr15 43394018 43394298 -42301456 + AluSx SINE Alu 1 290 -22 946 133 0 0 chr15 43394752 43394895 -42300859 + AluSp/q SINE Alu 171 313 0 385 330 65 32 chr15 43394932 43395117 -42300637 - MIR SINE MIR 0 262 72 1639 185 0 10 chr15 43395941 43396238 -42299516 - AluJo SINE Alu -18 294 1 252 170 0 0 chr15 43396324 43396371 -42299383 + FLAM SINE Alu 85 131 -2 815 271 122 34 chr15 43396586 43396620 -42299134 + MLT1J LTR MaLR 1 31 -480 1116 167 51 33 chr15 43396620 43396835 -42298919 - MER20 DNA MER1_type 0 219 1 815 271 122 34 chr15 43396835 43397209 -42298545 + MLT1J LTR MaLR 31 445 -66 188 299 197 28 chr15 43397438 43397692 -42298062 + L2 LINE L2 2364 2660 -654 273 342 44 76 chr15 43397904 43398220 -42297534 + L2 LINE L2 2945 3250 -22 363 342 86 11 chr15 43398226 43398413 -42297341 - MIR SINE MIR -1 261 61 342 0 0 0 chr15 43398612 43398650 -42297104 + (CA)n Simple_repeat Simple_repeat 1 38 0 965 160 252 29 chr15 43398691 43398929 -42296825 - AluSx SINE Alu -13 299 9 352 311 10 0 chr15 43398930 43399033 -42296721 + MIR3 SINE MIR 101 204 -4 1887 88 4 11 chr15 43399193 43399454 -42296300 + AluSq SINE Alu 1 259 -54 207 0 0 0 chr15 43399488 43399511 -42296243 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1657 73 229 0 chr15 43399517 43399762 -42295992 + AluY SINE Alu 1 301 0 307 272 221 6 chr15 43400344 43400502 -42295252 + MIR SINE MIR 51 242 -20 210 71 0 0 chr15 43400534 43400562 -42295192 + (T)n Simple_repeat Simple_repeat 1 28 0 1375 94 6 0 chr15 43400583 43400764 -42294990 - AluSq SINE Alu -131 182 1 2051 113 3 3 chr15 43401173 43401465 -42294289 + AluSx SINE Alu 1 292 -20 2010 108 14 0 chr15 43401479 43401766 -42293988 + AluSx SINE Alu 1 291 -21 933 67 17 0 chr15 43401766 43401885 -42293869 + AluY SINE Alu 1 121 -190 1094 161 0 78 chr15 43401985 43402203 -42293551 - AluJo SINE Alu -111 201 1 712 258 49 55 chr15 43402381 43402737 -42293017 + L1MC4a LINE L1 5565 5819 -302 2055 128 3 0 chr15 43402760 43403056 -42292698 - AluSp SINE Alu -16 297 1 2302 85 0 0 chr15 43403200 43403495 -42292259 + AluSg SINE Alu 1 295 -15 660 190 36 22 chr15 43403536 43403673 -42292081 - MIR SINE MIR -64 198 60 695 257 40 14 chr15 43403749 43403971 -42291783 - L1MC/D LINE L1 -1995 5813 5586 708 269 91 66 chr15 43403971 43404037 -42291717 - MLT1H LTR MaLR 0 549 486 2122 106 0 0 chr15 43404037 43404330 -42291424 + AluSg SINE Alu 1 293 -17 708 269 91 66 chr15 43404330 43404757 -42290997 - MLT1H LTR MaLR -63 486 1 736 275 18 33 chr15 43404758 43405034 -42290720 - L1MC/D LINE L1 -2219 5589 5318 311 226 93 56 chr15 43405229 43405411 -42290343 + MIR3 SINE MIR 1 188 -62 1233 186 23 0 chr15 43408861 43409081 -42286673 - AluJo SINE Alu -18 294 70 302 167 0 0 chr15 43410041 43410095 -42285659 - L2 LINE L2 -2 3311 3258 2735 147 13 2 chr15 43410298 43410762 -42284992 - L1MB3 LINE L1 -32 6151 5683 248 258 61 0 chr15 43410782 43410848 -42284906 - MIR SINE MIR -76 186 117 333 343 82 0 chr15 43411646 43411780 -42283974 - MIR SINE MIR -64 198 54 211 335 116 47 chr15 43413289 43413719 -42282035 - L2 LINE L2 0 3272 2813 1338 43 0 0 chr15 43414291 43414452 -42281302 - L1PA4 LINE L1 0 6155 5995 2285 77 3 0 chr15 43414452 43414750 -42281004 - AluSg1 SINE Alu -10 299 1 488 30 15 0 chr15 43415018 43415084 -42280670 + (TG)n Simple_repeat Simple_repeat 2 68 0 1748 69 0 0 chr15 43415405 43415621 -42280133 - AluY SINE Alu -95 216 1 475 264 149 14 chr15 43416454 43416662 -42279092 - L2 LINE L2 0 3313 3078 403 240 118 44 chr15 43416753 43417029 -42278725 + LTR33 LTR ERVL 115 449 -72 775 243 211 28 chr15 43417051 43417554 -42278200 - L2 LINE L2 -274 3039 2447 194 248 48 57 chr15 43417845 43417950 -42277804 + L2 LINE L2 2218 2321 -993 253 304 88 54 chr15 43418301 43418505 -42277249 + MIR SINE MIR 49 259 -3 * 409 237 67 27 chr15 43418490 43418645 -42277109 - MIR SINE MIR -40 168 6 581 237 22 0 chr15 43419758 43419893 -42275861 + MER91B DNA MER1_type 3 140 -50 356 282 39 0 chr15 43420076 43420179 -42275575 + MIR3 SINE MIR 83 189 -19 375 307 47 8 chr15 43420334 43420461 -42275293 + MIR SINE MIR 80 211 -51 334 290 41 41 chr15 43420692 43420913 -42274841 + L2 LINE L2 2841 3061 -211 214 374 49 8 chr15 43421002 43421125 -42274629 + MIR SINE MIR 108 235 -27 311 247 5 30 chr15 43421727 43421835 -42273919 - MIR SINE MIR -63 145 60 1310 88 0 16 chr15 43421995 43422177 -42273577 + AluSx SINE Alu 1 179 -133 2887 128 9 19 chr15 43422563 43422994 -42272760 - MSTC LTR MaLR 0 428 2 411 68 0 0 chr15 43422994 43423053 -42272701 + (TG)n Simple_repeat Simple_repeat 2 60 0 361 259 101 38 chr15 43423213 43423371 -42272383 + MIR3 SINE MIR 12 179 -29 363 243 10 29 chr15 43423763 43423866 -42271888 - MIR SINE MIR -59 149 49 322 314 9 0 chr15 43423905 43424010 -42271744 + L3b LINE CR1 1278 1383 -200 388 226 40 5 chr15 43424256 43424378 -42271376 - MIR SINE MIR -63 145 13 546 179 57 0 chr15 43424432 43424538 -42271216 + FLAM_A SINE Alu 10 121 -21 2451 73 0 0 chr15 43424550 43424872 -42270882 + AluSx SINE Alu 1 322 0 21 0 0 0 chr15 43424876 43424897 -42270857 + AT_rich Low_complexity Low_complexity 1 21 0 1367 164 122 35 chr15 43424953 43425240 -42270514 + AluJo SINE Alu 1 312 0 2128 126 23 19 chr15 43425347 43425657 -42270097 - AluSx SINE Alu -1 311 1 2042 177 0 0 chr15 43425659 43425969 -42269785 - AluJb SINE Alu 0 312 3 262 260 125 0 chr15 43425981 43426085 -42269669 - MER113 DNA MER1_type? -401 120 4 1445 131 79 4 chr15 43426220 43426472 -42269282 + MER1B DNA MER1_type 69 339 0 248 0 31 0 chr15 43426501 43426533 -42269221 + (TG)n Simple_repeat Simple_repeat 1 33 0 484 232 0 65 chr15 43427020 43427188 -42268566 + L1MC5 LINE L1 7072 7228 -733 1416 215 83 102 chr15 43427266 43427852 -42267902 + L1MC5 LINE L1 7238 7811 -150 2528 77 3 0 chr15 43427852 43428151 -42267603 + AluSp SINE Alu 3 302 -11 1416 215 83 102 chr15 43428151 43428253 -42267501 + L1MC5 LINE L1 7811 7913 -48 182 167 0 74 chr15 43428272 43428326 -42267428 + MIR SINE MIR 213 262 0 * 287 191 88 0 chr15 43428323 43428391 -42267363 - MIR SINE MIR -121 141 68 215 150 0 25 chr15 43428690 43428730 -42267024 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2307 97 7 0 chr15 43429199 43429498 -42266256 - AluSp SINE Alu -12 301 1 180 0 0 0 chr15 43431577 43431597 -42264157 + (CTGGGG)n Simple_repeat Simple_repeat 2 21 0 1946 100 60 0 chr15 43433616 43433925 -42261829 - AluSq SINE Alu 0 327 3 234 0 0 0 chr15 43433929 43433955 -42261799 + (TTA)n Simple_repeat Simple_repeat 1 26 0 639 128 39 0 chr15 43433955 43434057 -42261697 - FLAM_C SINE Alu -27 116 11 234 131 0 98 chr15 43434174 43434235 -42261519 - L1MC4 LINE L1 0 8042 7988 444 143 0 0 chr15 43434240 43434303 -42261451 + AluS SINE Alu 6 68 -244 227 184 0 41 chr15 43434511 43434560 -42261194 - L1ME LINE L1 -504 5617 5571 2106 111 7 11 chr15 43434632 43434934 -42260820 - AluSg SINE Alu 0 303 3 1477 103 123 0 chr15 43435735 43435939 -42259815 - AluSg/x SINE Alu -14 298 70 808 131 75 0 chr15 43436039 43436199 -42259555 + L1MB4 LINE L1 6009 6180 0 951 124 0 48 chr15 43436380 43436525 -42259229 - FLAM_C SINE Alu -5 138 1 387 250 31 103 chr15 43437270 43437435 -42258319 - MER5B DNA MER1_type -21 168 2 2207 113 3 52 chr15 43437968 43438296 -42257458 - AluSx SINE Alu 0 312 1 1748 178 10 13 chr15 43438426 43438724 -42257030 + AluJo SINE Alu 5 301 -11 1948 133 10 45 chr15 43438727 43438872 -42256882 + AluSx SINE Alu 1 131 -181 2536 66 0 0 chr15 43438872 43439173 -42256581 + AluY SINE Alu 1 301 -10 1948 133 10 45 chr15 43439173 43439336 -42256418 + AluSx SINE Alu 131 298 -14 282 279 108 18 chr15 43439417 43439528 -42256226 + MIR SINE MIR 18 138 -124 21 0 0 0 chr15 43439914 43439935 -42255819 + AT_rich Low_complexity Low_complexity 1 21 0 1955 146 0 17 chr15 43440036 43440331 -42255423 + AluJo SINE Alu 2 291 -21 1288 189 91 142 chr15 43440354 43440924 -42254830 + L1MC4a LINE L1 5286 5826 -1982 1863 109 0 4 chr15 43440925 43441163 -42254591 + AluSc SINE Alu 1 237 -72 242 263 220 8 chr15 43441351 43441469 -42254285 - MIR SINE MIR -50 212 70 2393 99 0 0 chr15 43441575 43441868 -42253886 - AluSg SINE Alu -17 293 1 523 217 9 26 chr15 43442095 43442210 -42253544 + MER81 DNA DNA 1 113 -1 1037 176 6 0 chr15 43442465 43442635 -42253119 - FRAM SINE Alu -13 163 1 31 26 0 0 chr15 43442730 43442768 -42252986 + AT_rich Low_complexity Low_complexity 1 38 0 351 228 141 33 chr15 43443037 43443159 -42252595 + MIR SINE MIR 13 148 -60 2088 134 3 13 chr15 43443233 43443539 -42252215 + AluSx SINE Alu 1 303 -9 498 280 106 5 chr15 43443540 43443755 -42251999 - MIR SINE MIR -7 255 20 427 226 43 17 chr15 43444297 43444412 -42251342 - L1MC5 LINE L1 -843 7118 7001 937 308 69 15 chr15 43444997 43445056 -42250698 - LTR16A LTR ERVL -22 428 374 2077 138 0 7 chr15 43445056 43445361 -42250393 + AluSx SINE Alu 1 303 -9 937 308 69 15 chr15 43445361 43445707 -42250047 - LTR16A LTR ERVL -76 374 1 2052 117 3 14 chr15 43446217 43446507 -42249247 + AluSc SINE Alu 1 287 -22 286 317 161 26 chr15 43446727 43447118 -42248636 + L2 LINE L2 2818 3261 -11 1701 145 30 0 chr15 43447426 43447729 -42248025 - L1MC2 LINE L1 -11 6333 6022 1285 121 0 0 chr15 43448042 43448216 -42247538 - AluSg/x SINE Alu -6 306 133 2189 105 7 3 chr15 43448701 43448995 -42246759 - AluSx SINE Alu -17 295 1 289 167 0 111 chr15 43450038 43450110 -42245644 - MIR SINE MIR -101 107 44 2198 130 0 3 chr15 43450110 43450411 -42245343 + AluSx SINE Alu 1 300 -12 2370 95 3 0 chr15 43450411 43450705 -42245049 + AluSq SINE Alu 1 295 -18 2132 107 3 27 chr15 43450708 43451006 -42244748 + AluSc SINE Alu 1 291 -18 1038 121 5 79 chr15 43451006 43451196 -42244558 + AluSc SINE Alu 133 308 -1 223 210 148 30 chr15 43451234 43451345 -42244409 - MIR SINE MIR -83 125 16 291 341 53 24 chr15 43451731 43451977 -42243777 - MIR SINE MIR -2 260 8 242 316 0 13 chr15 43452570 43452646 -42243108 + L2 LINE L2 3234 3308 -5 360 279 0 0 chr15 43453060 43453139 -42242615 + MIR SINE MIR 79 157 -105 560 152 62 0 chr15 43453150 43453262 -42242492 + L2 LINE L2 3194 3312 -1 1935 148 10 3 chr15 43453547 43453838 -42241916 + AluSx SINE Alu 4 296 -16 22 0 0 0 chr15 43454918 43454940 -42240814 + AT_rich Low_complexity Low_complexity 1 22 0 2429 95 3 0 chr15 43456275 43456581 -42239173 + AluSp SINE Alu 1 307 -6 249 243 184 40 chr15 43456883 43456984 -42238770 - MIR SINE MIR -66 142 55 192 333 0 0 chr15 43457251 43457302 -42238452 - L2 LINE L2 0 3272 3222 186 43 0 0 chr15 43457636 43457659 -42238095 + (CA)n Simple_repeat Simple_repeat 2 24 0 349 87 0 29 chr15 43457695 43457764 -42237990 + (CA)n Simple_repeat Simple_repeat 2 68 0 192 313 15 15 chr15 43457827 43457894 -42237860 + MIR SINE MIR 88 154 -108 195 111 32 48 chr15 43458275 43458338 -42237416 + G-rich Low_complexity Low_complexity 2 63 0 282 157 20 0 chr15 43459065 43459116 -42236638 - MIR SINE MIR -61 147 96 556 171 27 7 chr15 43459509 43459655 -42236099 + GA-rich Low_complexity Low_complexity 4 152 0 2242 93 14 0 chr15 43459662 43459952 -42235802 + AluSp SINE Alu 1 294 -19 307 246 26 0 chr15 43459955 43460069 -42235685 + GA-rich Low_complexity Low_complexity 4 120 0 201 292 62 49 chr15 43460592 43460736 -42235018 - L2 LINE L2 -283 2989 2844 470 278 38 8 chr15 43460935 43461068 -42234686 - MIR SINE MIR -41 221 85 707 207 0 0 chr15 43461228 43461349 -42234405 - AluJb SINE Alu -36 276 156 280 364 91 36 chr15 43461561 43461924 -42233830 - L2 LINE L2 -425 2889 2507 2431 89 3 0 chr15 43461973 43462275 -42233479 + AluSx SINE Alu 1 303 -9 686 255 34 51 chr15 43462289 43462670 -42233084 - L2 LINE L2 -244 3069 2697 1114 158 65 33 chr15 43462680 43462895 -42232859 + AluJo SINE Alu 85 306 -6 2475 86 3 0 chr15 43462903 43463207 -42232547 + AluSp SINE Alu 7 311 -2 527 302 50 50 chr15 43463218 43463735 -42232019 - L2 LINE L2 -791 2523 2007 494 220 8 0 chr15 43464484 43464602 -42231152 + L1ME2 LINE L1 5557 5675 -489 2134 97 3 0 chr15 43464602 43464891 -42230863 + AluY SINE Alu 1 290 -21 2492 75 0 3 chr15 43464900 43465208 -42230546 + AluSx SINE Alu 1 307 -5 485 171 16 73 chr15 43465212 43465335 -42230419 + L1ME2 LINE L1 5933 6048 -116 675 191 173 40 chr15 43465335 43465508 -42230246 + MER3 DNA MER1_type 14 209 0 320 284 9 0 chr15 43465508 43465617 -42230137 + L1ME2 LINE L1 6045 6154 -10 2082 148 0 0 chr15 43465635 43465938 -42229816 + AluJo SINE Alu 7 309 -3 2201 133 0 0 chr15 43465939 43466239 -42229515 + AluSg SINE Alu 2 301 -9 495 236 9 0 chr15 43466247 43466357 -42229397 + FLAM_A SINE Alu 13 123 -19 1024 190 0 17 chr15 43466374 43466537 -42229217 - AluJb SINE Alu -15 297 136 1391 347 0 56 chr15 43466537 43466860 -42228894 - AluY SINE Alu -6 305 1 1024 190 0 17 chr15 43466860 43466875 -42228879 - AluJb SINE Alu -176 136 122 1824 255 63 18 chr15 43466916 43467523 -42228231 + L1MC4a LINE L1 5268 5901 -1907 1134 271 118 54 chr15 43466947 43467745 -42228009 + L1MB7 LINE L1 5297 6145 -39 * 945 216 128 41 chr15 43467854 43467913 -42227841 - MLT2E LTR ERVL -2 626 574 1929 130 6 60 chr15 43467913 43468062 -42227692 - MER1B DNA MER1_type -2376 334 179 2192 100 38 3 chr15 43468062 43468352 -42227402 + AluSq SINE Alu 1 300 -13 1929 130 6 60 chr15 43468352 43468555 -42227199 - MER1B DNA MER1_type -2531 179 1 945 216 128 41 chr15 43468555 43468893 -42226861 - MLT2E LTR ERVL -54 574 147 325 320 191 11 chr15 43468896 43469074 -42226680 + L1MC4a LINE L1 6126 6335 -1473 2070 120 48 3 chr15 43469135 43469426 -42226328 + AluSx SINE Alu 1 304 -8 2207 114 3 0 chr15 43469437 43469726 -42226028 + AluSx SINE Alu 6 295 -17 28 48 0 0 chr15 43470826 43470868 -42224886 + GC_rich Low_complexity Low_complexity 1 42 0 562 237 56 25 chr15 43471192 43471404 -42224350 - MIR SINE MIR -2 260 41 445 269 25 19 chr15 43472138 43472298 -42223456 - MIR3 SINE MIR -4 204 44 207 161 0 0 chr15 43472368 43472399 -42223355 + (TGG)n Simple_repeat Simple_repeat 1 31 0 361 240 273 13 chr15 43472399 43472553 -42223201 - MIR SINE MIR -22 240 47 2386 113 0 0 chr15 43472952 43473261 -42222493 - AluSc SINE Alu 0 309 1 1967 144 0 23 chr15 43473263 43473569 -42222185 - AluJo SINE Alu -13 299 1 180 200 29 0 chr15 43473840 43473875 -42221879 + L3 LINE CR1 1534 1569 -8 2005 116 4 0 chr15 43474000 43474267 -42221487 + AluSx SINE Alu 1 268 -44 206 270 210 30 chr15 43475033 43475133 -42220621 - MIR SINE MIR -132 130 13 2048 138 10 7 chr15 43475298 43475602 -42220152 - AluJo SINE Alu -7 305 1 247 192 0 90 chr15 43475618 43475696 -42220058 - L2 LINE L2 -292 2980 2910 203 262 0 33 chr15 43475684 43475745 -42220009 - MIR SINE MIR -78 130 72 * 283 276 79 8 chr15 43475977 43476191 -42219563 - L2 LINE L2 -304 2968 2677 189 0 0 0 chr15 43476494 43476515 -42219239 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 584 291 195 24 chr15 43476720 43477053 -42218701 + L3 LINE CR1 458 847 -730 957 129 7 7 chr15 43477058 43477197 -42218557 + AluJb SINE Alu 3 141 -171 28 29 0 0 chr15 43477221 43477256 -42218498 + AT_rich Low_complexity Low_complexity 1 35 0 2296 104 0 0 chr15 43477647 43477944 -42217810 + AluSx SINE Alu 1 297 -15 209 267 0 0 chr15 43478064 43478109 -42217645 + L3 LINE CR1 585 629 -948 27 0 0 0 chr15 43478426 43478453 -42217301 + AT_rich Low_complexity Low_complexity 1 27 0 282 302 123 30 chr15 43479202 43479437 -42216317 + L3 LINE CR1 1132 1388 -189 1704 192 14 7 chr15 43479528 43479825 -42215929 - AluJo SINE Alu -13 299 1 1765 160 40 7 chr15 43479934 43480234 -42215520 - AluJb SINE Alu 0 312 3 2348 99 0 3 chr15 43480344 43480647 -42215107 - AluSx SINE Alu -10 302 1 279 283 88 0 chr15 43481141 43481254 -42214500 + MIR SINE MIR 70 192 -70 397 184 68 10 chr15 43481509 43481612 -42214142 + Charlie4a DNA MER1_type 1 109 -399 1282 122 11 0 chr15 43481612 43481792 -42213962 - AluSg/x SINE Alu -10 300 119 1148 190 65 0 chr15 43481792 43482055 -42213699 + Charlie4a DNA MER1_type 115 394 -114 424 248 0 19 chr15 43482055 43482160 -42213594 + MLT1D LTR MaLR 1 103 -402 1137 171 112 2 chr15 43482175 43482411 -42213343 + MLT1D LTR MaLR 217 504 -1 376 164 109 18 chr15 43482429 43482539 -42213215 + Charlie4a DNA MER1_type 377 496 -12 363 280 99 87 chr15 43482931 43483356 -42212398 - MLT1H LTR MaLR 0 549 120 1205 179 120 26 chr15 43483596 43483904 -42211850 - L1MD3 LINE L1 -168 7827 7491 2362 101 0 3 chr15 43483917 43484225 -42211529 + AluSx SINE Alu 1 307 -5 328 346 7 20 chr15 43484696 43484849 -42210905 - MIR SINE MIR -77 185 35 256 298 67 10 chr15 43486113 43486217 -42209537 - L2 LINE L2 -5 3267 3158 2507 60 3 7 chr15 43486574 43486875 -42208879 - AluY SINE Alu -11 300 1 516 284 97 11 chr15 43487013 43487189 -42208565 - MIR3 SINE MIR -15 193 3 34 0 0 0 chr15 43488109 43488143 -42207611 + AT_rich Low_complexity Low_complexity 1 34 0 1968 158 18 0 chr15 43488154 43488439 -42207315 - AluJb SINE Alu -21 291 2 624 290 65 66 chr15 43488669 43488796 -42206958 - L2 LINE L2 0 3313 3187 3211 87 9 2 chr15 43488796 43489243 -42206511 + L1PA8 LINE L1 5723 6172 0 624 290 65 66 chr15 43489243 43489571 -42206183 - L2 LINE L2 -126 3187 1517 840 69 0 0 chr15 43490255 43490357 -42205397 - AluY SINE Alu -209 102 1 993 271 65 14 chr15 43490500 43490851 -42204903 - L1MC4a LINE L1 -1915 5893 5525 396 247 80 13 chr15 43491167 43491317 -42204437 - MER3 DNA MER1_type -20 189 30 1921 106 4 0 chr15 43491321 43491576 -42204178 + AluY SINE Alu 54 309 -2 433 148 15 54 chr15 43491582 43491865 -42203889 + GA-rich Low_complexity Low_complexity 1 271 0 237 95 24 24 chr15 43491969 43492011 -42203743 - Alu SINE Alu -260 42 1 2283 122 6 3 chr15 43492420 43492731 -42203023 + AluSx SINE Alu 1 312 0 309 165 38 63 chr15 43492733 43492812 -42202942 + L1MC3 LINE L1 5816 5892 -1916 5303 157 30 15 chr15 43492813 43493645 -42202109 + L1MC3 LINE L1 6738 7589 -196 2248 103 24 0 chr15 43493645 43493937 -42201817 + AluSx SINE Alu 1 299 -13 5303 157 30 15 chr15 43493937 43494112 -42201642 + L1MC3 LINE L1 7589 7760 -25 1068 181 6 6 chr15 43494112 43494294 -42201460 + AluJb SINE Alu 122 303 -9 1492 199 40 7 chr15 43494316 43494617 -42201137 + AluJo SINE Alu 1 311 -1 2202 168 68 11 chr15 43494669 43495301 -42200453 + L1ME4a LINE L1 4842 5500 -743 435 19 0 0 chr15 43495366 43495418 -42200336 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2506 51 0 17 chr15 43495418 43495712 -42200042 - AluY SINE Alu -22 289 1 2056 147 0 14 chr15 43495724 43496017 -42199737 - AluJb SINE Alu -23 289 1 450 279 72 59 chr15 43496017 43496239 -42199515 - L1 LINE L1 -1637 4509 4285 962 183 0 0 chr15 43496265 43496429 -42199325 - MSTD LTR MaLR 0 396 233 390 252 8 92 chr15 43496955 43497086 -42198668 + MIR SINE MIR 73 192 -70 386 313 147 0 chr15 43497089 43497239 -42198515 - MIR3 SINE MIR -3 205 34 296 273 36 14 chr15 43497703 43497842 -42197912 - L1ME LINE L1 -342 5779 5638 581 286 132 15 chr15 43497999 43498408 -42197346 + L1ME4a LINE L1 5568 6024 -97 247 323 31 72 chr15 43498615 43498838 -42196916 + L2 LINE L2 2952 3165 -107 220 286 91 13 chr15 43499283 43499360 -42196394 + MIR SINE MIR 110 192 -70 291 333 111 0 chr15 43500022 43500184 -42195570 + MER117 DNA MER1_type 2 181 -16 1915 155 39 8 chr15 43500285 43500582 -42195172 + MER47A DNA MER2_type 1 287 -2036 414 0 0 0 chr15 43500582 43500628 -42195126 + (TA)n Simple_repeat Simple_repeat 2 47 0 2305 104 0 7 chr15 43500632 43500929 -42194825 - AluSc SINE Alu -14 295 1 1915 155 39 8 chr15 43500929 43500981 -42194773 + MER47A DNA MER2_type 289 366 0 508 226 183 0 chr15 43501562 43501699 -42194055 + MER5B DNA MER1_type 17 178 0 203 231 55 44 chr15 43502686 43502777 -42192977 + L2 LINE L2 2868 2959 -313 277 292 28 45 chr15 43502860 43503125 -42192629 + L1 LINE L1 4072 4336 -1810 399 321 87 85 chr15 43503245 43503544 -42192210 + L1 LINE L1 4463 4765 -1381 2046 128 3 7 chr15 43503544 43503841 -42191913 + AluSx SINE Alu 4 299 -13 399 321 87 85 chr15 43503841 43504024 -42191730 + L1 LINE L1 4765 4946 -1200 490 287 147 0 chr15 43504224 43504374 -42191380 + MER5B DNA MER1_type 7 178 0 257 272 106 15 chr15 43505068 43505215 -42190539 + MIR3 SINE MIR 29 186 -22 424 305 112 50 chr15 43506231 43507270 -42188484 - HAL1 LINE L1 -1186 1321 854 836 119 4 48 chr15 43507289 43508056 -42187698 + (TTC)n Simple_repeat Simple_repeat 1 733 0 318 316 111 47 chr15 43508089 43508475 -42187279 - HAL1 LINE L1 -1215 1292 882 349 170 9 45 chr15 43508477 43508589 -42187165 + CT-rich Low_complexity Low_complexity 1 108 0 673 116 5 53 chr15 43508590 43508779 -42186975 + (TTC)n Simple_repeat Simple_repeat 1 180 0 325 315 110 35 chr15 43508782 43509357 -42186397 - L1M4c LINE L1 -1205 1538 947 319 144 10 41 chr15 43509357 43509454 -42186300 + CT-rich Low_complexity Low_complexity 3 96 0 899 105 9 36 chr15 43509455 43509901 -42185853 + (TTC)n Simple_repeat Simple_repeat 1 433 0 765 93 4 61 chr15 43509915 43510161 -42185593 + (TTC)n Simple_repeat Simple_repeat 1 232 0 1520 112 5 0 chr15 43510169 43510374 -42185380 - AluSg/x SINE Alu -2 310 105 318 287 74 25 chr15 43610499 43610621 -42085133 - MIR SINE MIR -61 147 20 2358 97 0 0 chr15 43610678 43610978 -42084776 + AluSx SINE Alu 1 300 -12 528 260 84 19 chr15 43611246 43611400 -42084354 - MIR SINE MIR -50 212 49 2247 98 17 0 chr15 43611581 43611878 -42083876 + AluSg SINE Alu 1 302 -8 296 266 101 0 chr15 43611889 43611968 -42083786 - MER5A DNA MER1_type -43 146 60 431 273 81 12 chr15 43612411 43612572 -42083182 + MIR SINE MIR 20 191 -71 21 36 0 0 chr15 43612677 43612705 -42083049 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr15 43612720 43612748 -42083006 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 2512 77 3 0 chr15 43612985 43613295 -42082459 + AluY SINE Alu 1 311 0 1758 181 19 16 chr15 43613887 43614197 -42081557 + AluJo SINE Alu 1 311 -1 2244 86 0 0 chr15 43614630 43614944 -42080810 + AluY SINE Alu 1 314 0 1375 95 0 0 chr15 43614945 43615124 -42080630 + AluSq SINE Alu 135 313 0 2546 66 0 19 chr15 43615168 43615485 -42080269 + AluY SINE Alu 1 311 0 2303 100 0 10 chr15 43616279 43616580 -42079174 + AluSx SINE Alu 1 298 -14 337 259 53 53 chr15 43616634 43616765 -42078989 + L2 LINE L2 2924 3054 -218 183 240 0 40 chr15 43616832 43616882 -42078872 + L2 LINE L2 3265 3312 -1 183 263 50 61 chr15 43621333 43621432 -42074322 - MIR SINE MIR -46 216 119 1905 243 97 30 chr15 43621450 43621682 -42074072 + MER20B DNA MER1_type 13 228 -555 2079 142 0 0 chr15 43621682 43621977 -42073777 + AluJb SINE Alu 1 295 -17 1905 243 97 30 chr15 43621977 43622467 -42073287 + MER20B DNA MER1_type 228 783 0 193 337 79 0 chr15 43622750 43622839 -42072915 + L2 LINE L2 2919 3014 -258 962 165 17 11 chr15 43622839 43623015 -42072739 + MER5B DNA MER1_type 1 177 -1 2389 112 0 0 chr15 43623131 43623443 -42072311 - AluSx SINE Alu 0 312 1 2187 120 17 0 chr15 43623593 43623892 -42071862 + AluSx SINE Alu 1 304 -8 350 294 231 13 chr15 43623994 43624139 -42071615 - L2 LINE L2 -353 2961 2849 2567 53 0 0 chr15 43624139 43624438 -42071316 + AluY SINE Alu 1 299 -12 350 294 231 13 chr15 43624438 43624530 -42071224 - L2 LINE L2 -465 2849 2672 499 271 126 5 chr15 43624652 43624859 -42070895 - L2 LINE L2 -1216 2098 1867 258 32 0 0 chr15 43625071 43625102 -42070652 + (T)n Simple_repeat Simple_repeat 1 31 0 1107 122 147 41 chr15 43625339 43625584 -42070170 + ORSL DNA AcHobo 1 271 -4 2283 92 0 10 chr15 43626727 43627021 -42068733 + AluSc SINE Alu 1 291 -18 248 256 179 51 chr15 43627025 43627142 -42068612 + L2 LINE L2 3181 3312 -1 2820 16 0 0 chr15 43627216 43627519 -42068235 + AluYa5 SINE Alu 1 303 -8 6633 119 131 45 chr15 43627699 43627793 -42067961 - Tigger2 DNA MER2_type -147 2571 2487 1344 177 52 62 chr15 43627793 43628081 -42067673 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr15 43628081 43628101 -42067653 + (TA)n Simple_repeat Simple_repeat 2 21 0 6633 119 131 45 chr15 43628101 43628964 -42066790 - Tigger2 DNA MER2_type -231 2487 1465 2240 110 0 20 chr15 43628964 43629263 -42066491 + AluSx SINE Alu 1 293 -19 6633 119 131 45 chr15 43629263 43629627 -42066127 - Tigger2 DNA MER2_type -1253 1465 1134 189 0 0 0 chr15 43629627 43629648 -42066106 + (T)n Simple_repeat Simple_repeat 1 21 0 342 115 0 0 chr15 43629794 43629846 -42065908 + (A)n Simple_repeat Simple_repeat 1 52 0 370 309 5 86 chr15 43630237 43630447 -42065307 + MIR SINE MIR 20 212 -50 2377 108 0 0 chr15 43630496 43630793 -42064961 - AluSx SINE Alu -15 297 1 2000 159 0 3 chr15 43630900 43631202 -42064552 - AluJb SINE Alu -11 301 1 887 236 110 21 chr15 43631965 43632259 -42063495 - L2 LINE L2 -246 3067 2748 230 279 20 109 chr15 43632745 43632802 -42062952 + L2 LINE L2 2972 3032 -240 2162 123 0 0 chr15 43632802 43633107 -42062647 + AluSx SINE Alu 1 305 0 230 279 20 109 chr15 43633107 43633195 -42062559 + L2 LINE L2 3032 3105 -167 201 250 0 0 chr15 43633210 43633254 -42062500 + L2 LINE L2 3270 3313 0 487 246 87 8 chr15 43633633 43633759 -42061995 + MER91B DNA MER1_type 55 190 0 430 289 166 0 chr15 43634160 43634347 -42061407 + MIR SINE MIR 19 236 -26 509 276 120 18 chr15 43634351 43634576 -42061178 - MIR SINE MIR 0 262 15 248 355 47 24 chr15 43635433 43635602 -42060152 + L2 LINE L2 2792 2962 -310 484 238 157 29 chr15 43635912 43636122 -42059632 + MIR SINE MIR 14 250 -12 251 229 42 83 chr15 43636234 43636330 -42059424 + MIR SINE MIR 117 208 -54 787 250 27 5 chr15 43636368 43636556 -42059198 + MIR SINE MIR 63 254 -8 216 0 0 0 chr15 43637078 43637102 -42058652 + (T)n Simple_repeat Simple_repeat 1 24 0 888 167 86 0 chr15 43640408 43640582 -42055172 - MER5A DNA MER1_type 0 189 1 197 323 108 0 chr15 43640766 43640859 -42054895 - L2 LINE L2 -2 3270 3168 231 203 0 0 chr15 43640927 43640996 -42054758 + (TG)n Simple_repeat Simple_repeat 2 70 0 2179 124 3 0 chr15 43641042 43641341 -42054413 + AluSx SINE Alu 1 300 -12 201 268 169 56 chr15 43641665 43641807 -42053947 + MIR3 SINE MIR 34 191 -17 1900 150 30 33 chr15 43641824 43642191 -42053563 - MER47A DNA MER2_type 0 366 1 279 299 37 9 chr15 43643686 43643793 -42051961 - MIR SINE MIR -65 197 88 1371 249 91 27 chr15 43644052 43644501 -42051253 + MLT1H LTR MaLR 72 549 0 472 254 117 30 chr15 43644506 43644550 -42051204 - MLT1K LTR MaLR -6 582 543 2484 97 0 0 chr15 43644550 43644860 -42050894 - AluSx SINE Alu -2 310 1 472 254 117 30 chr15 43644860 43645011 -42050743 - MLT1K LTR MaLR -45 543 370 556 262 30 24 chr15 43645011 43645175 -42050579 + MLT1G1 LTR MaLR 1 165 -430 2402 91 3 0 chr15 43645180 43645478 -42050276 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 43645479 43645502 -42050252 + (T)n Simple_repeat Simple_repeat 1 23 0 1205 127 0 0 chr15 43645513 43645678 -42050076 + AluSg/x SINE Alu 132 296 -16 3057 172 53 78 chr15 43647232 43647650 -42048104 - L1ME1 LINE L1 -18 6148 5721 2164 117 7 7 chr15 43647650 43647958 -42047796 - AluSx SINE Alu -4 308 1 3057 172 53 78 chr15 43647958 43647982 -42047772 - L1ME1 LINE L1 -445 5721 5698 1913 140 17 17 chr15 43647982 43648282 -42047472 - AluSx SINE Alu -12 300 1 3057 172 53 78 chr15 43648282 43648702 -42047052 - L1ME1 LINE L1 -468 5698 5259 1784 137 15 11 chr15 43648702 43648972 -42046782 - AluJb SINE Alu -8 304 34 3057 172 53 78 chr15 43648972 43649166 -42046588 - L1ME1 LINE L1 -907 5259 5062 918 219 0 6 chr15 43649169 43649347 -42046407 - FRAM SINE Alu 0 176 1 489 179 8 95 chr15 43649347 43649448 -42046306 - L1ME1 LINE L1 -1090 5056 5006 1792 186 3 3 chr15 43649448 43649744 -42046010 + AluJb SINE Alu 1 296 -16 489 179 8 95 chr15 43649744 43649860 -42045894 - L1ME1 LINE L1 -1140 5006 4881 189 0 0 0 chr15 43649868 43649889 -42045865 + (T)n Simple_repeat Simple_repeat 1 21 0 2298 115 0 3 chr15 43650211 43650524 -42045230 - AluSx SINE Alu 0 312 1 832 143 0 23 chr15 43650654 43650787 -42044967 + FLAM_C SINE Alu 3 132 -1 398 198 11 11 chr15 43651212 43651303 -42044451 + MIR SINE MIR 61 151 -57 2417 88 0 7 chr15 43651491 43651798 -42043956 - AluY SINE Alu -6 305 1 2230 105 26 7 chr15 43651805 43652109 -42043645 - AluSx SINE Alu -1 311 2 183 319 51 85 chr15 43652741 43652976 -42042778 + L2 LINE L2 2992 3218 -54 377 304 8 0 chr15 43653621 43653746 -42042008 + MIR SINE MIR 65 190 -72 * 645 247 53 7 chr15 43653745 43653895 -42041859 - MER5B DNA MER1_type -18 160 4 2446 100 0 3 chr15 43653914 43654225 -42041529 - AluSx SINE Alu -2 310 1 8697 47 1 0 chr15 43654608 43655576 -42040178 - LTR5 LTR ERVK 0 969 1 2474 71 0 23 chr15 43655659 43655968 -42039786 + AluSx SINE Alu 1 302 -10 1775 171 10 27 chr15 43656983 43657281 -42038473 - AluJo SINE Alu -19 293 1 370 257 62 0 chr15 43657338 43657411 -42038343 - L2 LINE L2 -12 3301 3217 2522 79 3 0 chr15 43657411 43657716 -42038038 + AluSp SINE Alu 1 306 -7 370 257 62 0 chr15 43657716 43657755 -42037999 - L2 LINE L2 -96 3217 3182 746 113 0 0 chr15 43657927 43658033 -42037721 + U6 snRNA snRNA 1 106 -1 2262 129 0 3 chr15 43658046 43658357 -42037397 + AluSx SINE Alu 1 310 -2 728 167 8 8 chr15 43658428 43658554 -42037200 - FRAM SINE Alu -19 157 32 180 0 0 0 chr15 43658572 43658592 -42037162 + (TA)n Simple_repeat Simple_repeat 2 21 0 895 257 44 58 chr15 43658636 43658946 -42036808 - L1MEc LINE L1 -3594 2621 2361 2309 107 3 7 chr15 43658946 43659254 -42036500 - AluSx SINE Alu -5 307 1 895 257 44 58 chr15 43659254 43659501 -42036253 - L1MEc LINE L1 -3854 2361 2112 1950 137 20 7 chr15 43659522 43659814 -42035940 - AluSx SINE Alu -16 296 1 315 302 105 11 chr15 43659831 43660041 -42035713 - L1MEc LINE L1 -4548 1848 1598 259 152 0 22 chr15 43660173 43660219 -42035535 + Alu SINE Alu 1 45 -255 322 277 131 15 chr15 43660375 43660505 -42035249 - MER63A DNA MER1_type 0 210 66 231 113 113 0 chr15 43660514 43660567 -42035187 + L1MB1 LINE L1 6060 6118 -50 1096 169 3 152 chr15 43660687 43660963 -42034791 + AluJo SINE Alu 1 214 -88 226 0 59 0 chr15 43660963 43660997 -42034757 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1096 169 3 152 chr15 43660997 43661075 -42034679 + AluJo SINE Alu 214 302 0 24 0 0 0 chr15 43661076 43661100 -42034654 + AT_rich Low_complexity Low_complexity 1 24 0 578 120 33 0 chr15 43661106 43661198 -42034556 + L1MB1 LINE L1 6031 6125 -43 2309 70 40 10 chr15 43661198 43661500 -42034254 + AluY SINE Alu 1 311 0 2041 145 10 0 chr15 43661523 43661826 -42033928 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr15 43661849 43661876 -42033878 + AT_rich Low_complexity Low_complexity 1 27 0 238 246 143 0 chr15 43661930 43662056 -42033698 - L1MEc LINE L1 -5965 240 97 519 165 10 39 chr15 43662245 43662348 -42033406 - AluJ/FLAM SINE Alu -212 100 1 679 257 127 39 chr15 43662577 43662915 -42032839 - MLT1F1 LTR MaLR 0 595 228 2510 62 0 37 chr15 43662936 43663070 -42032684 + AluY SINE Alu 1 138 -173 1077 84 0 0 chr15 43663070 43663225 -42032529 + L1PA5 LINE L1 5999 6153 -1 2510 62 0 37 chr15 43663225 43663413 -42032341 + AluY SINE Alu 138 311 0 797 224 24 0 chr15 43663417 43663587 -42032167 - MLT1F1 LTR MaLR -369 198 25 2270 114 3 16 chr15 43663706 43664023 -42031731 - AluSq SINE Alu 0 313 1 585 209 91 170 chr15 43664582 43664806 -42030948 + MLT1K LTR MaLR 7 247 -341 2640 68 0 0 chr15 43664806 43665117 -42030637 + AluY SINE Alu 1 311 0 585 209 91 170 chr15 43665117 43665485 -42030269 + MLT1K LTR MaLR 247 552 -36 2168 118 0 50 chr15 43665690 43666012 -42029742 + AluSx SINE Alu 5 310 -2 397 259 114 0 chr15 43666289 43666420 -42029334 - MIR SINE MIR -57 205 60 2549 84 0 0 chr15 43666452 43666762 -42028992 + AluSx SINE Alu 1 310 -2 241 232 18 0 chr15 43668669 43668725 -42027029 - MER115 DNA AcHobo -609 84 28 2631 64 0 0 chr15 43668766 43669077 -42026677 + AluY SINE Alu 1 311 0 370 217 21 82 chr15 43669443 43669575 -42026179 + MIR SINE MIR 31 204 -58 1950 151 0 13 chr15 43669575 43669874 -42025880 + AluJo SINE Alu 1 295 -17 370 217 21 82 chr15 43669874 43669930 -42025824 + MIR SINE MIR 204 262 0 700 302 124 43 chr15 43672105 43672221 -42023533 - L2 LINE L2 -8 3305 3200 2793 75 3 0 chr15 43672221 43672582 -42023172 + THE1B LTR MaLR 3 364 0 700 302 124 43 chr15 43672582 43672909 -42022845 - L2 LINE L2 -113 3200 2826 970 180 0 57 chr15 43673096 43673324 -42022430 + L1ME1 LINE L1 3474 3688 -2458 1935 147 7 3 chr15 43673324 43673617 -42022137 + AluJb SINE Alu 6 299 -13 3993 210 71 49 chr15 43673617 43673855 -42021899 + L1ME1 LINE L1 4031 4262 -1904 2328 91 0 0 chr15 43673855 43674171 -42021583 + AluSx SINE Alu 1 316 0 3993 210 71 49 chr15 43674171 43675429 -42020325 + L1ME1 LINE L1 4262 5491 -675 2453 90 0 10 chr15 43675429 43675730 -42020024 + AluSx SINE Alu 1 298 -14 2084 141 0 10 chr15 43675734 43676038 -42019716 + AluSx SINE Alu 1 301 -11 3993 210 71 49 chr15 43676038 43676347 -42019407 + L1ME1 LINE L1 5493 5794 -372 1331 114 44 161 chr15 43676347 43676506 -42019248 + AluSx SINE Alu 1 100 -202 360 0 0 0 chr15 43676506 43676546 -42019208 + (CA)n Simple_repeat Simple_repeat 2 41 0 1331 114 44 161 chr15 43676546 43676728 -42019026 + AluSx SINE Alu 100 302 0 3993 210 71 49 chr15 43676728 43676740 -42019014 + L1ME1 LINE L1 5794 5804 -362 957 144 0 46 chr15 43676740 43676914 -42018840 + FRAM SINE Alu 1 166 0 2445 89 0 0 chr15 43676914 43677217 -42018537 + AluY SINE Alu 1 303 -8 3993 210 71 49 chr15 43677217 43677374 -42018380 + L1ME1 LINE L1 5803 6051 -115 195 129 0 0 chr15 43677380 43677411 -42018343 + (T)n Simple_repeat Simple_repeat 1 31 0 2370 107 0 3 chr15 43677416 43677724 -42018030 - AluSc SINE Alu -2 307 1 1768 175 0 7 chr15 43677728 43678014 -42017740 - AluJo SINE Alu -19 293 10 471 227 62 0 chr15 43678016 43678144 -42017610 + L1MA10 LINE L1 6198 6333 -1 735 282 175 39 chr15 43678146 43678569 -42017185 - L2 LINE L2 -589 2725 2197 2231 91 14 10 chr15 43678569 43678865 -42016889 - AluSq SINE Alu -16 297 1 735 282 175 39 chr15 43678865 43679034 -42016720 - L2 LINE L2 -1117 2197 2052 1789 189 79 53 chr15 43679040 43679511 -42016243 - MLT1D LTR MaLR 0 505 23 253 318 89 58 chr15 43679778 43679867 -42015887 + L2 LINE L2 2674 2759 -554 2522 74 0 6 chr15 43679867 43680178 -42015576 - AluSc SINE Alu 0 309 1 253 318 89 58 chr15 43680178 43680665 -42015089 + L2 LINE L2 2759 3267 -46 283 267 0 27 chr15 43680783 43680858 -42014896 + L2 LINE L2 2926 2998 -274 382 224 31 0 chr15 43680873 43680971 -42014783 + MIR SINE MIR 15 115 -147 1910 125 35 55 chr15 43680976 43681100 -42014654 + AluSx SINE Alu 1 126 -186 2218 105 0 60 chr15 43681100 43681432 -42014322 + AluSx SINE Alu 1 312 0 1910 125 35 55 chr15 43681432 43681618 -42014136 + AluSx SINE Alu 126 305 -7 251 234 149 28 chr15 43681779 43681886 -42013868 + L2 LINE L2 3169 3288 -25 199 188 0 94 chr15 43684369 43684433 -42011321 - MIR3 SINE MIR -48 160 103 40 0 0 0 chr15 43685342 43685382 -42010372 + AT_rich Low_complexity Low_complexity 1 40 0 2269 120 0 7 chr15 43685414 43685723 -42010031 - AluSq SINE Alu -6 307 1 2123 129 7 7 chr15 43686089 43686399 -42009355 - AluSx SINE Alu -2 310 1 185 383 47 9 chr15 43686651 43686758 -42008996 - L2 LINE L2 -5 3308 3198 446 211 109 41 chr15 43687612 43687759 -42007995 + MIR SINE MIR 94 250 -12 35 24 0 0 chr15 43687949 43687991 -42007763 + AT_rich Low_complexity Low_complexity 1 42 0 295 301 142 0 chr15 43688246 43688359 -42007395 - MER117 DNA MER1_type -68 129 1 357 285 77 0 chr15 43689269 43689399 -42006355 - MIR SINE MIR -51 211 72 190 195 26 91 chr15 43689600 43689615 -42006139 + MER5A DNA MER1_type 3 12 -177 439 203 224 7 chr15 43689615 43689758 -42005996 - MER5A DNA MER1_type -1 188 15 781 139 12 81 chr15 43689771 43689878 -42005876 - MER5B DNA MER1_type -15 163 71 2048 91 68 20 chr15 43689878 43690174 -42005580 - AluSg SINE Alu 0 310 1 781 139 12 81 chr15 43690174 43690238 -42005516 - MER5B DNA MER1_type -107 71 4 521 200 187 20 chr15 43690253 43690403 -42005351 - MER5A DNA MER1_type -6 183 9 2008 129 3 7 chr15 43690931 43691217 -42004537 + AluSq SINE Alu 5 289 -24 301 79 0 0 chr15 43691295 43691333 -42004421 + Alu SINE Alu 1 38 -264 1116 167 40 22 chr15 43691434 43691656 -42004098 - AluJb SINE Alu -86 226 1 302 114 0 0 chr15 43691656 43691700 -42004054 - AluSc SINE Alu -166 133 90 1053 109 7 0 chr15 43691703 43691841 -42003913 + AluSx SINE Alu 1 139 -173 1034 124 0 26 chr15 43691895 43692048 -42003706 + AluSx SINE Alu 134 282 -30 597 294 39 9 chr15 43692055 43692286 -42003468 - L1MC4 LINE L1 -423 7619 7382 2104 123 0 0 chr15 43692801 43693098 -42002656 - AluSc SINE Alu 0 299 3 2370 91 3 0 chr15 43693100 43693396 -42002358 - AluSp SINE Alu -16 297 1 207 100 0 0 chr15 43693396 43693426 -42002328 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1502 142 0 0 chr15 43693426 43693638 -42002116 - AluSg/x SINE Alu -28 282 71 2015 164 3 0 chr15 43693638 43693936 -42001818 - AluSx SINE Alu -12 300 1 586 202 54 31 chr15 43693946 43694075 -42001679 - FLAM_A SINE Alu -1 132 1 1832 161 17 3 chr15 43694107 43694398 -42001356 + AluJb SINE Alu 5 299 -13 2123 129 7 0 chr15 43694422 43694725 -42001029 + AluSx SINE Alu 1 305 -7 730 274 132 36 chr15 43694949 43694984 -42000770 + L1ME LINE L1 4457 4487 -1677 2383 87 7 0 chr15 43694984 43695284 -42000470 + AluSg SINE Alu 3 304 -6 730 274 132 36 chr15 43695284 43696131 -41999623 + L1ME LINE L1 4487 5440 -724 1408 160 16 85 chr15 43696173 43696479 -41999275 + AluJb SINE Alu 1 285 -27 2368 84 13 10 chr15 43696556 43696867 -41998887 - AluSq SINE Alu 0 313 2 518 204 80 0 chr15 43697168 43697281 -41998473 + MER33 DNA MER1_type 19 140 -184 678 135 0 18 chr15 43697284 43697395 -41998359 - AluSq/x SINE Alu -203 110 2 914 68 0 8 chr15 43697606 43697723 -41998031 - U5 snRNA snRNA 0 116 1 519 165 0 0 chr15 43698655 43698746 -41997008 - AluJ/FLAM SINE Alu -220 92 2 364 120 10 160 chr15 43698904 43698965 -41996789 - L1MB8 LINE L1 -6 6172 6130 2516 48 0 3 chr15 43698965 43699259 -41996495 + AluY SINE Alu 1 293 -18 364 120 10 160 chr15 43699259 43699297 -41996457 - L1MB8 LINE L1 -48 6130 6088 349 261 135 0 chr15 43700837 43700948 -41994806 - L2 LINE L2 -16 3297 3172 344 175 18 18 chr15 43701105 43701219 -41994535 + CT-rich Low_complexity Low_complexity 3 116 0 2634 55 3 0 chr15 43701221 43701531 -41994223 - AluY SINE Alu 0 311 1 1958 108 7 7 chr15 43701551 43701829 -41993925 - AluSx SINE Alu -32 280 3 1803 183 135 16 chr15 43702020 43702457 -41993297 + Charlie4a DNA MER1_type 18 506 -2 2108 134 13 0 chr15 43702563 43702870 -41992884 - AluY SINE Alu 0 311 1 2077 118 14 0 chr15 43702915 43703241 -41992513 - AluSx SINE Alu 0 330 1 1088 168 111 8 chr15 43703248 43703492 -41992262 - L1MB2 LINE L1 -1 6170 5902 1767 90 5 0 chr15 43703500 43703723 -41992031 - AluSg/x SINE Alu -17 293 70 233 97 0 0 chr15 43703723 43703754 -41992000 - Alu SINE Alu -272 31 1 2248 106 0 7 chr15 43703791 43704092 -41991662 - AluSx SINE Alu -13 299 1 235 232 51 14 chr15 43705835 43705875 -41989879 + (TA)n Simple_repeat Simple_repeat 1 38 -105 1283 189 121 8 chr15 43705875 43706139 -41989615 + AluJb SINE Alu 1 294 -18 235 232 51 14 chr15 43706139 43706236 -41989518 + (TA)n Simple_repeat Simple_repeat 38 143 0 1667 178 37 0 chr15 43706618 43706916 -41988838 + AluJb SINE Alu 1 309 -3 2114 122 0 10 chr15 43707343 43707638 -41988116 + AluSx SINE Alu 1 292 -20 2326 106 3 0 chr15 43707818 43708129 -41987625 + AluSq SINE Alu 2 313 0 249 254 63 0 chr15 43708236 43708299 -41987455 - MIR SINE MIR -116 146 80 300 283 25 33 chr15 43708413 43708533 -41987221 - MER5A DNA MER1_type -6 183 65 1187 153 53 18 chr15 43708952 43709180 -41986574 + MER46A DNA MER2_type 1 236 0 2064 116 0 43 chr15 43709181 43709508 -41986246 - AluSq SINE Alu 0 313 1 335 230 72 36 chr15 43709512 43709651 -41986103 - L1ME LINE L1 -731 5431 5288 865 241 132 5 chr15 43709833 43710045 -41985709 - MER8 DNA MER2_type 0 239 1 3192 179 77 28 chr15 43710068 43710149 -41985605 - L1MB7 LINE L1 -1 6183 6107 2411 83 0 0 chr15 43710149 43710437 -41985317 + AluSg SINE Alu 1 288 -22 2168 94 7 14 chr15 43710439 43710736 -41985018 + AluY SINE Alu 1 295 -16 3192 179 77 28 chr15 43710736 43711321 -41984433 - L1MB7 LINE L1 -77 6107 5474 2256 116 13 0 chr15 43711321 43711624 -41984130 - AluSx SINE Alu -5 307 1 3192 179 77 28 chr15 43711624 43711670 -41984084 - L1MB7 LINE L1 -710 5474 5432 1400 172 102 4 chr15 43711672 43711928 -41983826 - AluJo SINE Alu -5 307 27 692 117 28 0 chr15 43711947 43712055 -41983699 - L1P4 LINE L1 -727 5441 5328 1758 126 11 11 chr15 43712055 43712325 -41983429 - AluSq SINE Alu -6 307 38 692 117 28 0 chr15 43712325 43712339 -41983415 - L1P4 LINE L1 -840 5328 5316 1696 121 117 11 chr15 43712449 43712722 -41983032 + AluSg1 SINE Alu 1 302 -7 2055 145 0 0 chr15 43713251 43713547 -41982207 - AluSx SINE Alu -16 296 1 2332 110 0 3 chr15 43713591 43713901 -41981853 + AluSc SINE Alu 1 309 0 2167 98 20 17 chr15 43713933 43714229 -41981525 - AluSq SINE Alu -16 297 1 465 185 65 0 chr15 43714557 43714649 -41981105 + FLAM_A SINE Alu 29 126 -16 2241 96 3 20 chr15 43714652 43714953 -41980801 + AluSq SINE Alu 2 297 -16 1737 121 13 0 chr15 43715036 43715275 -41980479 - AluSx SINE Alu -70 242 1 985 188 9 57 chr15 43715310 43715539 -41980215 + AluJb SINE Alu 1 218 -94 769 71 0 0 chr15 43715540 43715638 -41980116 + AluY SINE Alu 152 249 -62 1374 158 0 4 chr15 43715638 43715866 -41979888 + AluJo SINE Alu 85 311 -1 2766 51 0 0 chr15 43715953 43716285 -41979469 - L1PA5 LINE L1 -2 6152 5821 2412 79 16 0 chr15 43716301 43716604 -41979150 - AluY SINE Alu -3 308 1 2272 83 0 40 chr15 43716815 43717115 -41978639 - AluSx SINE Alu -21 291 4 2249 104 0 3 chr15 43717342 43717639 -41978115 + AluSc SINE Alu 1 296 -13 2605 45 0 22 chr15 43719022 43719336 -41976418 + AluY SINE Alu 1 307 -4 1737 156 32 3 chr15 43719374 43719656 -41976098 - AluJb SINE Alu -21 291 2 860 144 0 8 chr15 43719796 43719928 -41975826 + FLAM_C SINE Alu 1 131 -2 21 36 0 0 chr15 43719928 43719956 -41975798 + AT_rich Low_complexity Low_complexity 1 28 0 426 196 105 15 chr15 43720789 43720922 -41974832 - MER112 DNA MER1_type -11 249 105 1116 128 6 0 chr15 43720925 43721089 -41974665 + AluSx SINE Alu 1 165 -147 612 161 125 0 chr15 43721484 43721596 -41974158 - AluJb SINE Alu -16 296 171 386 177 6 24 chr15 43721596 43721675 -41974079 - AluS SINE Alu -242 61 1 23 54 0 0 chr15 43722992 43723029 -41972725 + AT_rich Low_complexity Low_complexity 1 37 0 685 208 38 19 chr15 43723603 43723762 -41971992 - MIR SINE MIR -28 234 73 315 0 0 0 chr15 43724053 43724088 -41971666 + (TG)n Simple_repeat Simple_repeat 1 35 0 288 0 0 0 chr15 43724087 43724119 -41971635 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 2407 103 0 0 chr15 43724599 43724910 -41970844 + AluSx SINE Alu 1 311 -1 1802 100 4 0 chr15 43725049 43725329 -41970425 - AluSx SINE Alu 0 335 55 303 309 32 24 chr15 43725551 43725677 -41970077 - MIR SINE MIR -66 142 16 1718 159 43 0 chr15 43726393 43726669 -41969085 + AluJo SINE Alu 4 291 -21 1713 96 13 9 chr15 43729167 43729397 -41966357 + AluSq SINE Alu 5 235 -78 581 270 27 5 chr15 43729397 43729582 -41966172 + MIR SINE MIR 30 218 -44 235 284 0 15 chr15 43730609 43730676 -41965078 + L2 LINE L2 2703 2768 -546 * 247 343 118 59 chr15 43730644 43730848 -41964906 + L2 LINE L2 3041 3256 -16 1819 128 0 23 chr15 43731286 43731544 -41964210 - AluSx SINE Alu -60 252 1 696 116 36 18 chr15 43731666 43731811 -41963943 + FLAM_C SINE Alu 4 150 0 1187 144 0 6 chr15 43731815 43731988 -41963766 + AluSx SINE Alu 1 172 -140 313 65 16 48 chr15 43731997 43732059 -41963695 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 32 0 0 chr15 43732357 43732388 -41963366 + AT_rich Low_complexity Low_complexity 1 31 0 2406 84 0 3 chr15 43732484 43732782 -41962972 + AluSc SINE Alu 1 297 -12 216 0 0 0 chr15 43733231 43733255 -41962499 + (T)n Simple_repeat Simple_repeat 1 24 0 2351 109 0 0 chr15 43733345 43733649 -41962105 - AluSx SINE Alu -8 304 1 2250 91 0 20 chr15 43734353 43734651 -41961103 + AluSg SINE Alu 1 292 -18 2258 100 10 7 chr15 43734831 43735132 -41960622 - AluSg SINE Alu -8 302 1 1977 132 17 3 chr15 43735220 43735515 -41960239 - AluSx SINE Alu -13 299 1 286 259 166 58 chr15 43737015 43737358 -41958396 + L2 LINE L2 1363 1742 -1572 227 366 62 0 chr15 43737343 43737455 -41958299 + L2 LINE L2 3139 3257 -15 * 2235 116 0 3 chr15 43737471 43737772 -41957982 + AluSq SINE Alu 1 300 -13 322 249 239 15 chr15 43737929 43738126 -41957628 + L2 LINE L2 1579 1819 -1495 692 191 29 7 chr15 43738171 43738307 -41957447 - FRAM SINE Alu -37 139 1 1109 78 6 0 chr15 43738584 43738763 -41956991 + (TA)n Simple_repeat Simple_repeat 1 180 0 2493 49 0 33 chr15 43738771 43739075 -41956679 - AluY SINE Alu -16 295 2 52 30 0 0 chr15 43739078 43739144 -41956610 + AT_rich Low_complexity Low_complexity 1 66 0 514 228 96 0 chr15 43739249 43739385 -41956369 - MIR SINE MIR -86 176 28 786 148 81 13 chr15 43739424 43739594 -41956160 - L1PA10 LINE L1 0 6168 5998 1877 134 25 4 chr15 43739632 43739907 -41955847 + AluJo SINE Alu 6 286 -26 2226 73 33 0 chr15 43739915 43740224 -41955530 - AluSp SINE Alu 0 318 1 1515 154 68 19 chr15 43740297 43740563 -41955191 + AluJb SINE Alu 1 279 -33 815 126 0 0 chr15 43740571 43740682 -41955072 + AluSg/x SINE Alu 182 292 -20 1919 83 105 11 chr15 43740710 43740987 -41954767 + AluSg SINE Alu 1 303 -7 2271 89 3 0 chr15 43741006 43741325 -41954429 + AluSp SINE Alu 1 320 0 686 203 0 36 chr15 43741637 43741775 -41953979 + FLAM_A SINE Alu 1 133 0 755 161 20 70 chr15 43741778 43741814 -41953940 + L1M4 LINE L1 4992 5028 -1118 1770 122 50 21 chr15 43741814 43742093 -41953661 + AluSx SINE Alu 1 287 -25 2334 73 17 0 chr15 43742093 43742380 -41953374 + AluSp SINE Alu 1 292 -21 2155 103 7 20 chr15 43742382 43742520 -41953234 + AluSx SINE Alu 1 139 -173 2560 65 7 0 chr15 43742520 43742827 -41952927 + AluSx SINE Alu 1 309 -3 2155 103 7 20 chr15 43742827 43742990 -41952764 + AluSx SINE Alu 139 298 -14 755 161 20 70 chr15 43742990 43743148 -41952606 + L1M4 LINE L1 5028 5180 -966 823 223 43 5 chr15 43743156 43743340 -41952414 + AluJo SINE Alu 1 191 -121 2090 117 4 0 chr15 43743340 43743655 -41952099 + AluSx SINE Alu 1 316 0 550 200 152 0 chr15 43743657 43743802 -41951952 + L1MD1 LINE L1 5944 6110 -132 295 200 89 67 chr15 43743803 43743893 -41951861 - LTR26 LTR ERV1 0 603 512 24 0 0 0 chr15 43743901 43743925 -41951829 + AT_rich Low_complexity Low_complexity 1 24 0 1296 255 58 74 chr15 43743952 43744111 -41951643 - LTR26 LTR ERV1 -81 522 362 1799 141 84 34 chr15 43744111 43744466 -41951288 + THE1C LTR MaLR 1 373 -2 2258 117 3 3 chr15 43744466 43744774 -41950980 + AluSq SINE Alu 1 308 -5 1296 255 58 74 chr15 43744774 43745117 -41950637 - LTR26 LTR ERV1 -240 363 25 3060 109 13 18 chr15 43745117 43745566 -41950188 - MER83 LTR ERV1 -1 447 1 1296 255 58 74 chr15 43745566 43745591 -41950163 - LTR26 LTR ERV1 -578 25 1 468 146 101 0 chr15 43745589 43745678 -41950076 + MER4A LTR ERV1 1 98 -566 * 1586 130 33 76 chr15 43745678 43745982 -41949772 + MER4A LTR ERV1 261 607 -57 1967 119 26 55 chr15 43745982 43746293 -41949461 - AluSg SINE Alu -8 302 1 1586 130 33 76 chr15 43746293 43746349 -41949405 + MER4A LTR ERV1 607 664 0 305 98 0 0 chr15 43746359 43746400 -41949354 - MER41A LTR ERV1 0 554 514 2498 108 11 24 chr15 43746400 43746769 -41948985 + THE1B LTR MaLR 1 364 0 6758 83 6 0 chr15 43746769 43747625 -41948129 + THE1B-int LTR MaLR 1 861 -719 275 105 0 0 chr15 43747625 43747663 -41948091 + Alu SINE Alu 1 38 -262 964 69 0 0 chr15 43747667 43747783 -41947971 + THE1B LTR MaLR 249 364 0 * 3473 119 32 2 chr15 43747783 43748286 -41947468 - MER41C LTR ERV1 -36 518 1 788 120 30 15 chr15 43748286 43748419 -41947335 + L1MD1 LINE L1 6108 6242 0 2101 108 14 0 chr15 43748477 43748776 -41946978 + AluSp SINE Alu 3 305 0 2010 119 4 0 chr15 43748876 43749153 -41946601 - AluSx SINE Alu -14 298 21 302 215 38 0 chr15 43749194 43749273 -41946481 - LTR36 LTR ERV1 0 611 530 1949 117 21 3 chr15 43749277 43749560 -41946194 + AluY SINE Alu 4 291 -20 1577 181 7 17 chr15 43749575 43749867 -41945887 + AluSx SINE Alu 1 289 -23 451 189 150 121 chr15 43749890 43750196 -41945558 - LTR36 LTR ERV1 -183 428 114 803 147 22 7 chr15 43750198 43750334 -41945420 - AluJb SINE Alu -19 293 156 415 68 0 17 chr15 43750335 43750394 -41945360 - Alu SINE Alu -247 62 5 268 148 131 0 chr15 43750398 43750459 -41945295 - LTR36 LTR ERV1 -490 121 53 199 237 136 34 chr15 43750506 43750624 -41945130 + L2 LINE L2 2930 3059 -213 202 313 7 7 chr15 43751173 43751317 -41944437 + (CCG)n Simple_repeat Simple_repeat 1 144 0 1545 54 0 0 chr15 43752162 43752347 -41943407 + AluSg1 SINE Alu 1 185 -124 651 71 0 0 chr15 43752347 43752431 -41943323 + AluSg1 SINE Alu 218 301 -9 277 289 0 0 chr15 43752580 43752670 -41943084 - L1MC4 LINE L1 -1339 6703 6614 490 275 62 6 chr15 43752693 43752871 -41942883 - MIR SINE MIR -44 218 31 2428 86 3 3 chr15 43752942 43753245 -41942509 - AluSp SINE Alu -10 303 1 2830 111 17 12 chr15 43753302 43753709 -41942045 - MER1A DNA MER1_type -120 409 1 1164 135 0 0 chr15 43753854 43754017 -41941737 - AluSg/x SINE Alu -15 295 133 22 0 0 0 chr15 43754212 43754234 -41941520 + AT_rich Low_complexity Low_complexity 1 22 0 2284 83 17 3 chr15 43754255 43754557 -41941197 + AluSq SINE Alu 1 306 -7 538 105 13 12 chr15 43754566 43754796 -41940958 + AluJb SINE Alu 1 308 -4 593 268 21 7 chr15 43754797 43754939 -41940815 - FRAM SINE Alu -33 143 1 310 252 46 15 chr15 43754942 43755073 -41940681 + L3 LINE CR1 1149 1283 -294 230 171 37 110 chr15 43755195 43755277 -41940477 - MER5A DNA MER1_type -113 76 1 2894 16 0 0 chr15 43757227 43757536 -41938218 - AluYb8 SINE Alu -9 309 1 250 286 48 65 chr15 43757866 43757930 -41937824 - L2 LINE L2 -836 2478 2414 2014 164 0 7 chr15 43757930 43758240 -41937514 - AluJo SINE Alu -4 308 1 250 286 48 65 chr15 43758240 43758343 -41937411 - L2 LINE L2 -900 2414 2314 2661 98 22 3 chr15 43758574 43758931 -41936823 + THE1B LTR MaLR 1 364 0 810 181 18 6 chr15 43758931 43759102 -41936652 + MIR SINE MIR 90 262 0 371 333 87 35 chr15 43759133 43759790 -41935964 - L2 LINE L2 -1387 1927 1237 2369 104 0 9 chr15 43760256 43760572 -41935182 - AluSq SINE Alu 0 313 1 378 185 31 0 chr15 43760726 43760791 -41934963 + MER58B DNA MER1_type 238 304 -37 2315 107 0 0 chr15 43761226 43761526 -41934228 + AluSc SINE Alu 1 300 -9 183 255 0 0 chr15 43761540 43761587 -41934167 - L2 LINE L2 0 3313 3267 333 322 81 46 chr15 43761608 43761686 -41934068 + L1ME LINE L1 5555 5629 -492 2353 83 20 0 chr15 43761686 43761986 -41933768 - AluSq SINE Alu -7 306 1 333 322 81 46 chr15 43761986 43762168 -41933586 + L1ME LINE L1 5629 5824 -297 2062 138 0 16 chr15 43762348 43762659 -41933095 - AluSx SINE Alu -6 306 1 295 150 0 33 chr15 43762913 43762973 -41932781 - L1MC5 LINE L1 -273 7688 7631 252 177 194 0 chr15 43763063 43763125 -41932629 + MER81 DNA DNA 41 114 0 2346 91 16 7 chr15 43763359 43763666 -41932088 + AluSp SINE Alu 1 310 -3 1418 157 0 104 chr15 43763898 43763994 -41931760 + AluJo SINE Alu 35 139 -173 1955 69 0 0 chr15 43763994 43764225 -41931529 - AluY SINE Alu -20 291 61 1418 157 0 104 chr15 43764225 43764260 -41931494 + AluJo SINE Alu 139 176 -136 1814 169 13 7 chr15 43764260 43764567 -41931187 + AluJb SINE Alu 1 309 -3 1418 157 0 104 chr15 43764567 43764733 -41931021 + AluJo SINE Alu 176 302 -10 227 215 15 31 chr15 43764881 43764946 -41930808 + GA-rich Low_complexity Low_complexity 4 67 0 299 167 0 0 chr15 43765597 43765645 -41930109 + MER82 DNA MER2_type 605 652 -1 22 43 0 21 chr15 43766857 43766877 -41928877 + AT_rich Low_complexity Low_complexity 1 20 -26 2343 72 0 16 chr15 43766877 43767182 -41928572 + AluY SINE Alu 1 300 -11 22 43 0 21 chr15 43767182 43767208 -41928546 + AT_rich Low_complexity Low_complexity 20 46 0 2354 109 0 6 chr15 43767989 43768302 -41927452 + AluSx SINE Alu 1 311 -1 1362 175 178 131 chr15 43768489 43768934 -41926820 - L1MC5 LINE L1 -30 7931 7362 382 135 108 14 chr15 43768934 43769008 -41926746 + MER33 DNA MER1_type 1 81 -243 1362 175 178 131 chr15 43769008 43769276 -41926478 - L1MC5 LINE L1 -599 7362 7108 275 276 112 20 chr15 43770037 43770189 -41925565 - L2 LINE L2 -33 3280 3115 2243 110 3 0 chr15 43770528 43770828 -41924926 + AluSg SINE Alu 1 301 -9 704 285 147 59 chr15 43770855 43770933 -41924821 - L2 LINE L2 -199 3073 3003 216 0 0 0 chr15 43770933 43770957 -41924797 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2083 136 0 0 chr15 43770959 43771245 -41924509 - AluSx SINE Alu -25 287 2 704 285 147 59 chr15 43771245 43771490 -41924264 - L2 LINE L2 -269 3003 2781 862 150 0 0 chr15 43771490 43771623 -41924131 - FLAM_C SINE Alu 0 133 1 704 285 147 59 chr15 43771623 43772117 -41923637 - L2 LINE L2 -491 2781 2164 1204 105 0 0 chr15 43772757 43772919 -41922835 + AluY SINE Alu 136 297 -14 2137 124 0 10 chr15 43772927 43773226 -41922528 + AluSx SINE Alu 1 296 -16 2343 88 0 22 chr15 43773999 43774316 -41921438 - AluSx SINE Alu -2 310 1 217 0 61 0 chr15 43774318 43774351 -41921403 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2380 68 0 0 chr15 43774354 43774633 -41921121 - AluSc SINE Alu -30 279 1 263 170 0 0 chr15 43774726 43774773 -41920981 - U2 snRNA snRNA -141 47 1 1921 217 103 78 chr15 43774819 43775206 -41920548 - L1ME LINE L1 -599 5563 5187 2622 56 3 0 chr15 43775206 43775509 -41920245 - AluY SINE Alu -7 304 1 1921 217 103 78 chr15 43775509 43775526 -41920228 - L1ME LINE L1 -975 5187 5172 2359 116 0 0 chr15 43775526 43775836 -41919918 - AluSx SINE Alu -1 311 2 1921 217 103 78 chr15 43775836 43775917 -41919837 - L1ME LINE L1 -990 5172 5095 1559 154 13 56 chr15 43775917 43776249 -41919505 - AluJb SINE Alu 0 312 1 1921 217 103 78 chr15 43776249 43776910 -41918844 - L1ME LINE L1 -1067 5095 4415 2250 107 0 25 chr15 43776945 43777263 -41918491 - AluSq SINE Alu -3 310 1 474 182 11 0 chr15 43777348 43777436 -41918318 - AluSc SINE Alu 0 309 221 708 256 114 33 chr15 43777443 43777771 -41917983 - L1ME LINE L1 -2131 4015 3642 2339 109 0 0 chr15 43777771 43778074 -41917680 + AluSx SINE Alu 1 303 -9 708 256 114 33 chr15 43778074 43778174 -41917580 - L1ME LINE L1 -2504 3642 3552 1497 123 0 5 chr15 43778708 43778911 -41916843 + AluSc SINE Alu 87 288 -21 1790 162 0 26 chr15 43779216 43779519 -41916235 - AluJb SINE Alu -17 295 1 1581 154 39 11 chr15 43779522 43779678 -41916076 - AluJo SINE Alu -19 293 124 2261 104 0 3 chr15 43779678 43779986 -41915768 - AluSc SINE Alu -2 307 1 1581 154 39 11 chr15 43779986 43780114 -41915640 - AluJo SINE Alu -188 124 1 577 302 120 33 chr15 43780115 43780424 -41915330 - L1MDa LINE L1 -1228 5312 5031 2000 137 9 19 chr15 43780424 43780739 -41915015 - AluSx SINE Alu 0 312 1 577 302 120 33 chr15 43780739 43780952 -41914802 - L1MDa LINE L1 -1509 5031 1084 268 303 22 11 chr15 43780955 43781044 -41914710 - L2 LINE L2 -3 3269 3180 222 348 58 0 chr15 43781399 43781537 -41914217 + MIR SINE MIR 56 201 -61 33 56 0 0 chr15 43782501 43782555 -41913199 + GC_rich Low_complexity Low_complexity 1 54 0 374 302 74 13 chr15 43782866 43783015 -41912739 + L2 LINE L2 3114 3271 -1 647 228 44 0 chr15 43783284 43783442 -41912312 + MER69A DNA AcHobo 2 166 -11 233 303 79 0 chr15 43783541 43783630 -41912124 + MIR SINE MIR 19 114 -94 333 260 104 0 chr15 43783778 43783874 -41911880 - MIR SINE MIR -73 189 84 239 300 56 11 chr15 43784324 43784414 -41911340 + MIR SINE MIR 75 168 -94 2186 110 3 3 chr15 43784441 43784750 -41911004 - AluSq SINE Alu -4 309 1 222 272 22 54 chr15 43784756 43784848 -41910906 - MIR SINE MIR -65 197 109 940 229 82 0 chr15 43785279 43785524 -41910230 - LTR16A LTR ERVL -134 316 52 858 261 140 23 chr15 43785822 43786276 -41909478 - MLT1H LTR MaLR 0 549 1 325 323 69 22 chr15 43786291 43786523 -41909231 - L2 LINE L2 -219 3053 2811 429 272 217 0 chr15 43787037 43787217 -41908537 - MIR SINE MIR -8 254 36 243 404 26 9 chr15 43788174 43788288 -41907466 - MER5A DNA MER1_type -40 149 34 955 211 6 17 chr15 43788328 43788508 -41907246 + MER5B DNA MER1_type 1 178 0 281 316 0 0 chr15 43788690 43788766 -41906988 + MIR SINE MIR 78 153 -55 235 219 0 0 chr15 43789127 43789168 -41906586 + L2 LINE L2 3136 3176 -96 454 319 74 48 chr15 43789170 43789480 -41906274 - L2 LINE L2 -1 3312 2995 2149 105 0 10 chr15 43790654 43790950 -41904804 - AluSx SINE Alu -19 293 1 374 204 54 84 chr15 43791758 43791925 -41903829 + HAL1 LINE L1 2346 2507 0 273 315 210 7 chr15 43791976 43792119 -41903635 + MIR3 SINE MIR 17 188 -20 248 302 47 70 chr15 43792126 43792255 -41903499 - MER5A DNA MER1_type -24 165 40 2240 92 3 0 chr15 43793131 43793424 -41902330 + AluSx SINE Alu 1 294 -18 305 229 208 0 chr15 43793434 43793530 -41902224 + FRAM SINE Alu 48 163 -3 574 317 106 18 chr15 43793576 43793803 -41901951 + MIR SINE MIR 6 252 -10 1050 111 74 37 chr15 43794399 43794491 -41901263 - MLT1D LTR MaLR -309 196 109 2135 92 53 0 chr15 43794491 43794774 -41900980 + AluSx SINE Alu 1 298 -14 1050 111 74 37 chr15 43794774 43794870 -41900884 - MLT1D LTR MaLR -396 109 1 214 273 18 73 chr15 43795993 43796103 -41899651 - L2 LINE L2 0 3272 3169 293 261 42 17 chr15 43796942 43797061 -41898693 + LTR67 LTR ERVL 432 553 -4 361 264 80 0 chr15 43797247 43797372 -41898382 + L2 LINE L2 3138 3272 0 570 278 62 10 chr15 43798434 43798643 -41897111 - MIR SINE MIR -35 227 8 315 308 45 6 chr15 43798666 43798825 -41896929 - MIR SINE MIR -59 203 35 465 286 89 41 chr15 43799238 43799676 -41896078 - LTR33 LTR ERVL -9 512 15 297 295 13 47 chr15 43799726 43799875 -41895879 + L2 LINE L2 2698 2841 -473 283 234 65 0 chr15 43799935 43800012 -41895742 - MIR SINE MIR -107 101 20 243 301 75 30 chr15 43800169 43800302 -41895452 - MIR SINE MIR -70 192 54 193 152 0 0 chr15 43801441 43801474 -41894280 + L2 LINE L2 3027 3059 -254 1218 239 229 8 chr15 43801644 43802206 -41893548 - L2 LINE L2 -8 3305 2640 343 264 72 40 chr15 43802587 43802712 -41893042 + MIR3 SINE MIR 4 132 -76 182 370 74 15 chr15 43803119 43803254 -41892500 + MIR3 SINE MIR 11 153 -55 931 192 67 116 chr15 43803552 43803973 -41891781 + LTR37B LTR ERV1 10 409 -59 1797 154 16 23 chr15 43803991 43804129 -41891625 + AluJo SINE Alu 1 138 -174 2216 96 3 3 chr15 43804129 43804431 -41891323 + AluSp SINE Alu 1 302 -11 1797 154 16 23 chr15 43804431 43804597 -41891157 + AluJo SINE Alu 138 303 -9 7528 121 78 106 chr15 43808126 43809872 -41885882 - pTR5 LTR ERV1 0 2438 741 249 287 50 30 chr15 43809944 43810015 -41885739 + MIR SINE MIR 67 142 -120 1963 137 0 10 chr15 43810015 43810329 -41885425 + AluSx SINE Alu 1 311 -1 249 287 50 30 chr15 43810329 43810358 -41885396 + MIR SINE MIR 142 169 -93 262 297 0 0 chr15 43810387 43810461 -41885293 - MIR SINE MIR -140 122 49 193 297 81 81 chr15 43810519 43810667 -41885087 + MIR SINE MIR 22 169 -93 378 192 164 0 chr15 43810807 43810911 -41884843 - MIR SINE MIR 0 262 142 531 269 86 38 chr15 43810913 43811072 -41884682 - MIR SINE MIR -60 202 31 3236 139 62 6 chr15 43811072 43811570 -41884184 + MER1A DNA MER1_type 1 526 -1 531 269 86 38 chr15 43811570 43811596 -41884158 - MIR SINE MIR -231 31 8 275 109 0 0 chr15 43811650 43811696 -41884058 - Alu SINE Alu -1 300 255 910 93 0 0 chr15 43811710 43811828 -41883926 - AluSq/x SINE Alu -166 147 30 210 258 91 0 chr15 43811888 43811954 -41883800 - MIR3 SINE MIR -15 193 122 303 244 23 23 chr15 43812083 43812169 -41883585 - MIR3 SINE MIR -28 180 95 205 226 0 2 chr15 43812699 43812745 -41883009 - MIR SINE MIR -53 155 110 180 326 200 0 chr15 43813451 43813546 -41882208 + L2 LINE L2 3140 3253 -19 417 299 124 28 chr15 43813724 43813901 -41881853 + MIR3 SINE MIR 15 208 0 215 250 94 0 chr15 43814077 43814141 -41881613 - L2 LINE L2 -2 3311 3242 1200 187 0 14 chr15 43814430 43814649 -41881105 - AluJb SINE Alu -16 296 81 212 262 16 16 chr15 43814650 43814711 -41881043 - MIR SINE MIR -66 142 82 588 268 81 38 chr15 43814865 43815100 -41880654 - L3 LINE CR1 -7 1570 1326 336 240 60 10 chr15 43815108 43815208 -41880546 - MIR SINE MIR -122 140 36 412 280 84 21 chr15 43815799 43815942 -41879812 - MIR3 SINE MIR -46 162 11 1157 172 38 5 chr15 43818189 43818398 -41877356 - AluJo SINE Alu -18 294 79 399 361 101 18 chr15 43818427 43818704 -41877050 - HAL1 LINE L1 -1226 1281 982 2173 99 10 10 chr15 43819818 43820122 -41875632 + AluSx SINE Alu 1 304 -8 765 269 64 28 chr15 43820262 43820511 -41875243 + MIR SINE MIR 2 259 -3 235 212 30 15 chr15 43821144 43821210 -41874544 - MIR SINE MIR -60 148 82 415 137 11 21 chr15 43821449 43821544 -41874210 + MER53 DNA DNA 92 185 -4 257 330 9 28 chr15 43822115 43822221 -41873533 - MIR SINE MIR -73 189 86 196 279 0 0 chr15 43822330 43822373 -41873381 + MIR SINE MIR 109 151 -111 1982 60 54 101 chr15 43822628 43822944 -41872810 - AluY SINE Alu 0 301 1 224 261 72 14 chr15 43823231 43823300 -41872454 + MIR3 SINE MIR 112 184 -24 324 303 98 8 chr15 43823446 43823568 -41872186 + MIR SINE MIR 47 179 -83 815 174 42 11 chr15 43824215 43824405 -41871349 + L1MD3 LINE L1 7787 7982 -13 272 237 53 26 chr15 43824548 43824624 -41871130 + MIR SINE MIR 184 261 -1 320 250 40 10 chr15 43824633 43824733 -41871021 - MIR SINE MIR -63 145 43 309 284 14 0 chr15 43825481 43825555 -41870199 + MIR SINE MIR 79 153 -55 2077 121 3 0 chr15 43826417 43826722 -41869032 - AluSg SINE Alu -4 306 1 279 400 115 37 chr15 43827565 43828025 -41867729 + L3 LINE CR1 11 506 -1071 184 309 134 21 chr15 43828173 43828270 -41867484 + L3 LINE CR1 1339 1446 -131 687 302 53 12 chr15 43829180 43829425 -41866329 - MIR SINE MIR -6 256 2 190 317 17 0 chr15 43831140 43831200 -41864554 - MIR SINE MIR -63 145 85 210 143 0 0 chr15 43831411 43831446 -41864308 + (A)n Simple_repeat Simple_repeat 1 35 0 2221 108 27 0 chr15 43832015 43832312 -41863442 + AluSx SINE Alu 1 305 -7 212 0 36 0 chr15 43832916 43832944 -41862810 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 182 369 68 0 chr15 43833380 43833483 -41862271 - L2 LINE L2 -90 3182 3073 2214 124 10 0 chr15 43833568 43833875 -41861879 + AluSx SINE Alu 1 310 -2 215 163 20 0 chr15 43833875 43833913 -41861841 + GA-rich Low_complexity Low_complexity 10 51 0 1048 256 79 36 chr15 43833997 43834388 -41861366 + L2 LINE L2 2889 3296 -17 192 77 0 0 chr15 43835358 43835384 -41860370 + (T)n Simple_repeat Simple_repeat 1 26 0 318 209 27 27 chr15 43835572 43835682 -41860072 - Charlie5 DNA MER1_type -66 2546 2437 2512 73 0 3 chr15 43835684 43835985 -41859769 - AluSx SINE Alu -12 300 1 2095 119 6 13 chr15 43836504 43836815 -41858939 - AluSx SINE Alu -3 309 1 620 77 11 0 chr15 43836874 43836965 -41858789 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 349 321 88 0 chr15 43836987 43837124 -41858630 + MER117 DNA MER1_type 1 149 -48 219 243 14 14 chr15 43837316 43837362 -41858392 + (TATG)n Simple_repeat Simple_repeat 2 50 -25 1988 116 76 0 chr15 43837362 43837637 -41858117 - AluSq SINE Alu -17 296 1 219 243 14 14 chr15 43837637 43837664 -41858090 + (TATG)n Simple_repeat Simple_repeat 49 75 0 2013 152 0 0 chr15 43837778 43838081 -41857673 - AluJb SINE Alu -9 303 1 2301 103 0 7 chr15 43838225 43838391 -41857363 - AluSq SINE Alu -14 299 134 2273 109 0 3 chr15 43838391 43838694 -41857060 - AluSq SINE Alu -11 302 1 2301 103 0 7 chr15 43838694 43838828 -41856926 - AluSq SINE Alu -179 134 1 567 216 22 15 chr15 43838892 43839026 -41856728 - L1MC3 LINE L1 -160 7625 7491 2328 108 0 0 chr15 43839953 43840258 -41855496 - AluY SINE Alu -6 305 1 1455 274 97 22 chr15 43840451 43840745 -41855009 - L2 LINE L2 0 3313 3042 2283 92 0 0 chr15 43840745 43841052 -41854702 + AluSx SINE Alu 1 307 0 1455 274 97 22 chr15 43841052 43841481 -41854273 - L2 LINE L2 -271 3042 2520 581 304 83 30 chr15 43841491 43841853 -41853901 - MLT1K LTR MaLR -21 567 187 278 200 189 33 chr15 43842144 43842234 -41853520 - L2 LINE L2 -33 3239 3136 269 200 0 0 chr15 43842500 43842545 -41853209 + L2 LINE L2 3006 3050 -263 371 284 209 13 chr15 43842546 43842785 -41852969 - MLT1J LTR MaLR -2 509 224 432 198 35 35 chr15 43843005 43843121 -41852633 + MLT1J LTR MaLR 1 116 -395 2150 104 31 0 chr15 43843121 43843408 -41852346 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr15 43843408 43843430 -41852324 + AT_rich Low_complexity Low_complexity 1 22 0 259 210 136 12 chr15 43843434 43843515 -41852239 + MLT1J LTR MaLR 105 195 -316 336 193 114 70 chr15 43843556 43843670 -41852084 - L1ME3A LINE L1 -8 6162 6044 374 162 14 95 chr15 43843670 43843744 -41852010 + Alu SINE Alu 235 301 -1 1209 167 101 8 chr15 43843744 43844002 -41851752 - L1ME3A LINE L1 -116 6054 5773 891 183 36 94 chr15 43844101 43844129 -41851625 + MER58A DNA MER1_type 1 29 -2391 2290 99 0 0 chr15 43844129 43844421 -41851333 - AluSc SINE Alu -17 292 1 891 183 36 94 chr15 43844421 43844468 -41851286 + MER58A DNA MER1_type 29 77 -2343 189 0 0 0 chr15 43844468 43844489 -41851265 + (TAA)n Simple_repeat Simple_repeat 2 22 0 891 183 36 94 chr15 43844489 43844636 -41851118 + MER58A DNA MER1_type 77 211 -13 2143 120 7 0 chr15 43844639 43844931 -41850823 + AluSx SINE Alu 1 294 -18 271 221 13 78 chr15 43844941 43845018 -41850736 + MLT1J LTR MaLR 337 408 -103 288 203 0 58 chr15 43845147 43845216 -41850538 + MIR SINE MIR 41 105 -103 357 218 0 0 chr15 43845918 43845996 -41849758 + L1ME LINE L1 5652 5729 -392 1805 147 33 0 chr15 43846002 43846275 -41849479 + AluJb SINE Alu 5 286 -26 2295 103 3 10 chr15 43846290 43846600 -41849154 + AluSx SINE Alu 1 308 -4 1621 174 51 7 chr15 43847404 43847697 -41848057 - AluJo SINE Alu -6 306 1 2384 94 0 22 chr15 43847872 43848191 -41847563 + AluSx SINE Alu 1 312 0 1150 153 21 70 chr15 43848844 43848924 -41846830 + L1M4 LINE L1 5528 5610 -574 2358 64 0 3 chr15 43848924 43849239 -41846515 + AluY SINE Alu 1 314 0 1150 153 21 70 chr15 43849239 43849300 -41846454 + L1M4 LINE L1 5610 5672 -512 2206 115 3 0 chr15 43849300 43849596 -41846158 - AluSx SINE Alu -14 298 2 1150 153 21 70 chr15 43849596 43849694 -41846060 + L1M4 LINE L1 5672 5757 -427 1344 78 0 0 chr15 43849694 43849860 -41845894 + LTR43 LTR ERV1 1 166 -436 1944 127 55 0 chr15 43849860 43850151 -41845603 + AluJb SINE Alu 1 307 -5 2189 113 0 3 chr15 43853061 43853361 -41842393 + AluSx SINE Alu 1 299 -13 2198 106 26 7 chr15 43853628 43853930 -41841824 + AluSx SINE Alu 1 308 -4 197 297 0 0 chr15 43854197 43854261 -41841493 + MIR SINE MIR 119 182 -80 580 252 29 39 chr15 43854304 43854510 -41841244 + MIR SINE MIR 58 261 -1 1387 146 110 4 chr15 43854593 43854883 -41840871 + AluJo SINE Alu 1 317 0 25 0 0 0 chr15 43855352 43855377 -41840377 + GC_rich Low_complexity Low_complexity 1 25 0 247 202 138 28 chr15 43855627 43855739 -41840015 - MIR SINE MIR -76 132 21 1814 160 17 0 chr15 43856280 43856574 -41839180 - AluJb SINE Alu -13 299 1 370 134 15 0 chr15 43857135 43857202 -41838552 - MER3 DNA MER1_type -5 204 137 2287 107 3 3 chr15 43857214 43857522 -41838232 + AluSx SINE Alu 1 308 -4 1595 238 119 27 chr15 43858828 43859274 -41836480 + L2 LINE L2 2171 2574 -739 225 0 0 0 chr15 43859274 43859299 -41836455 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1455 168 40 40 chr15 43859302 43859599 -41836155 - AluJo SINE Alu -15 297 1 1595 238 119 27 chr15 43859599 43860093 -41835661 + L2 LINE L2 2575 3297 -16 621 78 165 19 chr15 43860103 43860206 -41835548 + AluJb SINE Alu 191 308 -4 22 0 0 0 chr15 43860333 43860355 -41835399 + AT_rich Low_complexity Low_complexity 1 22 0 2284 81 7 0 chr15 43860382 43860665 -41835089 - AluSp SINE Alu -26 287 3 378 235 56 56 chr15 43861631 43861723 -41834031 + L1MC5 LINE L1 7752 7846 -115 1901 131 64 0 chr15 43861723 43862006 -41833748 + AluJb SINE Alu 1 301 -11 378 235 56 56 chr15 43862006 43862075 -41833679 + L1MC5 LINE L1 7845 7913 -48 2109 107 31 7 chr15 43862242 43862531 -41833223 - AluSc SINE Alu -13 296 1 746 193 0 15 chr15 43862880 43863015 -41832739 - FLAM_A SINE Alu 0 133 1 515 307 48 22 chr15 43863817 43864048 -41831706 - MIR SINE MIR 0 262 26 384 252 215 16 chr15 43864739 43865238 -41830516 - L1MC4 LINE L1 -33 8009 7281 303 207 141 59 chr15 43865291 43865426 -41830328 - L1MC4a LINE L1 -1584 6224 6079 2285 250 110 75 chr15 43865482 43866892 -41828862 - L1MC4a LINE L1 -341 5827 5836 1596 190 15 0 chr15 43866892 43867160 -41828594 - AluJb SINE Alu -4 308 37 2285 250 110 75 chr15 43867160 43867338 -41828416 - L1MC4a LINE L1 -331 5837 5667 526 225 39 34 chr15 43867354 43867532 -41828222 - L1MC4a LINE L1 -2376 5432 5254 201 162 0 0 chr15 43867593 43867630 -41828124 + T-rich Low_complexity Low_complexity 1 37 0 2135 129 0 3 chr15 43867635 43867929 -41827825 + AluSx SINE Alu 6 298 -14 26 30 0 0 chr15 43867999 43868032 -41827722 + AT_rich Low_complexity Low_complexity 1 33 0 233 273 27 55 chr15 43868032 43868142 -41827612 - L1MC5 LINE L1 -33 7928 7822 1855 153 3 7 chr15 43868863 43869157 -41826597 - AluJb SINE Alu -19 293 1 200 234 21 158 chr15 43869278 43869440 -41826314 - MIR SINE MIR -63 145 9 * 374 298 217 6 chr15 43869439 43869651 -41826103 + MIR SINE MIR 5 262 0 549 264 203 15 chr15 43869655 43869780 -41825974 - L2 LINE L2 0 3313 3213 2312 108 0 13 chr15 43869780 43870086 -41825668 + AluSx SINE Alu 1 302 -10 2435 79 3 7 chr15 43870086 43870389 -41825365 + AluSp SINE Alu 1 302 -11 549 264 203 15 chr15 43870389 43870592 -41825162 - L2 LINE L2 -99 3214 2922 3926 183 76 97 chr15 43870599 43870739 -41825015 + L1MB7 LINE L1 3673 3814 -2370 1967 154 10 6 chr15 43870739 43871050 -41824704 - AluSx SINE Alu 0 312 1 3926 183 76 97 chr15 43871050 43871298 -41824456 + L1MB7 LINE L1 3814 4066 -2118 778 182 8 0 chr15 43871298 43871430 -41824324 + FLAM_A SINE Alu 1 133 0 3926 183 76 97 chr15 43871430 43872012 -41823742 + L1MB7 LINE L1 4066 4659 -1525 2156 121 0 14 chr15 43872012 43872301 -41823453 + AluSx SINE Alu 1 285 -27 3926 183 76 97 chr15 43872301 43872387 -41823367 + L1MB7 LINE L1 4659 4745 -1439 198 0 0 0 chr15 43872387 43872409 -41823345 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3926 183 76 97 chr15 43872409 43872915 -41822839 + L1MB7 LINE L1 4745 5260 -924 1966 174 3 3 chr15 43872915 43873226 -41822528 + AluJb SINE Alu 1 311 -1 3926 183 76 97 chr15 43873226 43873369 -41822385 + L1MB7 LINE L1 5260 5404 -780 2278 103 3 0 chr15 43873369 43873671 -41822083 - AluSq SINE Alu -10 303 1 3926 183 76 97 chr15 43873671 43874507 -41821247 + L1MB7 LINE L1 5404 6175 -9 755 267 210 37 chr15 43874533 43874759 -41820995 - L2 LINE L2 -381 2933 2748 2105 144 0 6 chr15 43874759 43875071 -41820683 + AluJb SINE Alu 1 310 -2 755 267 210 37 chr15 43875071 43875391 -41820363 - L2 LINE L2 -566 2748 2292 531 259 22 22 chr15 43876109 43876248 -41819506 + MIR3 SINE MIR 19 157 -51 322 219 21 10 chr15 43876504 43876600 -41819154 + L1MB1 LINE L1 6072 6168 0 484 299 63 66 chr15 43876611 43877022 -41818732 + L1MC/D LINE L1 4993 5402 -744 392 215 123 65 chr15 43877070 43877330 -41818424 + L1MC/D LINE L1 5570 5844 -311 2465 121 40 16 chr15 43877381 43877760 -41817994 - MER61D LTR ERV1 0 501 114 2515 57 3 0 chr15 43878036 43878333 -41817421 + AluY SINE Alu 1 298 -13 2260 104 10 3 chr15 43878804 43879102 -41816652 + AluSx SINE Alu 1 300 -12 2360 97 0 0 chr15 43880394 43880693 -41815061 + AluSp SINE Alu 1 299 -14 2355 75 41 0 chr15 43880844 43881137 -41814617 - AluSq SINE Alu -8 305 1 307 108 4 0 chr15 43881223 43881283 -41814471 + MADE1 DNA Mariner 36 80 0 2458 93 0 0 chr15 43881727 43882029 -41813725 - AluSg SINE Alu -8 302 1 2472 77 0 16 chr15 43882283 43882595 -41813159 - AluY SINE Alu -4 307 1 1577 145 51 58 chr15 43882821 43883132 -41812622 - AluJo SINE Alu -3 309 1 530 242 92 0 chr15 43883366 43883486 -41812268 + MER94 DNA DNA 1 131 -3 234 355 152 23 chr15 43883575 43883792 -41811962 - L2 LINE L2 -126 3146 2902 291 337 115 26 chr15 43883930 43884200 -41811554 - L2 LINE L2 -400 2914 2621 2131 90 39 30 chr15 43884213 43884545 -41811209 + L1PA11 LINE L1 5840 6174 0 266 286 71 12 chr15 43884654 43884738 -41811016 + MIR SINE MIR 58 146 -62 2498 90 6 0 chr15 43885237 43885548 -41810206 + AluSp SINE Alu 1 313 0 284 274 186 40 chr15 43886238 43886362 -41809392 + MER5A DNA MER1_type 37 178 -11 343 248 255 13 chr15 43886573 43886730 -41809024 + MIR SINE MIR 68 262 0 1684 196 103 61 chr15 43886738 43886848 -41808906 + MLT2B1 LTR ERVL 6 110 -410 2133 155 0 0 chr15 43886848 43887151 -41808603 + AluJb SINE Alu 1 303 -9 1684 196 103 61 chr15 43887151 43887534 -41808220 + MLT2B1 LTR ERVL 110 520 0 2555 122 17 12 chr15 43887639 43888057 -41807697 - L1MA5A LINE L1 -5 6292 5873 581 153 21 31 chr15 43888058 43888191 -41807563 + MLT2D LTR ERVL 300 414 0 1741 147 3 0 chr15 43888191 43888484 -41807270 - L1MA5A LINE L1 -430 5867 5574 190 283 292 8 chr15 43888502 43888622 -41807132 - MIR3 SINE MIR -5 203 50 363 308 132 18 chr15 43888836 43889000 -41806754 + MIR SINE MIR 20 215 -47 2316 116 0 0 chr15 43889000 43889303 -41806451 + AluSx SINE Alu 1 303 -9 363 308 132 18 chr15 43889303 43889358 -41806396 + MIR SINE MIR 215 262 0 * 381 254 97 9 chr15 43889354 43889468 -41806286 - MIR SINE MIR -2 260 137 198 298 21 0 chr15 43889642 43889689 -41806065 - L2 LINE L2 -12 3301 3254 1032 198 12 0 chr15 43889739 43889911 -41805843 - FAM SINE Alu 0 175 2 2291 82 0 0 chr15 43890249 43890558 -41805196 - AluY SINE Alu 0 309 1 2353 88 7 0 chr15 43890663 43890959 -41804795 - AluSp SINE Alu -15 298 1 396 235 43 35 chr15 43890990 43891105 -41804649 - MIR3 SINE MIR -3 205 90 21 36 0 0 chr15 43891146 43891174 -41804580 + AT_rich Low_complexity Low_complexity 1 28 0 183 352 37 37 chr15 43891524 43891632 -41804122 - L2 LINE L2 -335 2978 2871 219 333 0 0 chr15 43891685 43891748 -41804006 - L2 LINE L2 -532 2782 2720 2062 118 0 17 chr15 43891766 43892078 -41803676 - AluSx SINE Alu 0 307 1 2438 65 3 0 chr15 43892253 43892545 -41803209 + AluSc SINE Alu 1 293 -16 1372 121 89 47 chr15 43893304 43893561 -41802193 - AluJo SINE Alu -21 291 24 400 92 15 0 chr15 43893949 43894014 -41801740 + Alu SINE Alu 240 305 -7 2401 91 0 0 chr15 43894027 43894325 -41801429 + AluSg SINE Alu 13 310 0 1860 152 24 3 chr15 43894332 43894628 -41801126 + AluJb SINE Alu 11 312 0 735 128 49 0 chr15 43894649 43894751 -41801003 - FLAM_C SINE Alu -35 108 2 431 246 18 9 chr15 43895887 43895997 -41799757 - MIR SINE MIR -48 214 104 2382 113 0 0 chr15 43896027 43896336 -41799418 - AluSx SINE Alu -3 309 1 2359 97 3 0 chr15 43896491 43896855 -41798899 - AluSc SINE Alu 0 365 1 226 238 0 32 chr15 43896507 43896868 -41798886 + CT-rich Low_complexity Low_complexity 3 63 0 1028 8 0 8 chr15 43897032 43897149 -41798605 - U5 snRNA snRNA 0 116 1 1264 107 12 0 chr15 43897456 43897624 -41798130 - AluSg/x SINE Alu -11 301 132 22 0 0 0 chr15 43897884 43897906 -41797848 + GC_rich Low_complexity Low_complexity 1 22 0 1130 156 5 5 chr15 43897928 43898120 -41797634 - AluJo SINE Alu -112 200 9 371 83 58 25 chr15 43898154 43898274 -41797480 + (TA)n Simple_repeat Simple_repeat 2 125 0 2462 133 58 28 chr15 43898317 43898648 -41797106 - L1MB4 LINE L1 0 6180 5829 2466 78 10 0 chr15 43898648 43898954 -41796800 - AluSq SINE Alu 0 313 5 2462 133 58 28 chr15 43898954 43899089 -41796665 - L1MB4 LINE L1 -351 5829 5700 1855 146 13 26 chr15 43899155 43899463 -41796291 - AluSx SINE Alu 0 312 9 740 136 17 0 chr15 43899463 43899581 -41796173 - AluJo/FLAM SINE Alu -182 130 11 368 253 10 10 chr15 43899604 43899703 -41796051 - AluSg/x SINE Alu -114 186 88 27 0 0 0 chr15 43899710 43899737 -41796017 + AT_rich Low_complexity Low_complexity 1 27 0 1692 234 129 24 chr15 43899758 43900458 -41795296 - L1MC3 LINE L1 -1677 6108 5336 2074 138 0 0 chr15 43900507 43900805 -41794949 + AluSx SINE Alu 1 298 -14 2235 110 10 0 chr15 43900805 43901105 -41794649 + AluSg SINE Alu 1 303 -7 1972 126 11 14 chr15 43901116 43901401 -41794353 + AluSc SINE Alu 2 285 -24 1313 148 29 69 chr15 43902054 43902331 -41793423 - AluJo SINE Alu -16 296 31 4436 133 25 47 chr15 43902331 43903755 -41791999 + pTR5 LTR ERV1 743 2438 0 1980 104 17 17 chr15 43904244 43904531 -41791223 + AluSx SINE Alu 1 287 -25 694 119 10 0 chr15 43904537 43904638 -41791116 - MER33 DNA MER1_type -217 107 6 406 326 60 37 chr15 43904652 43904867 -41790887 - L1 LINE L1 -1900 4246 4027 1092 178 14 33 chr15 43904930 43905144 -41790610 + AluJb SINE Alu 1 210 -102 1895 94 0 35 chr15 43905404 43905660 -41790094 + AluSg SINE Alu 1 247 -63 2184 117 0 0 chr15 43905695 43905999 -41789755 + AluSx SINE Alu 1 304 0 289 175 68 78 chr15 43906134 43906237 -41789517 - MIR SINE MIR -95 167 66 22 0 0 0 chr15 43906340 43906362 -41789392 + AT_rich Low_complexity Low_complexity 1 22 0 254 267 58 25 chr15 43906943 43907063 -41788691 + MER113 DNA MER1_type? 1 124 -397 28 0 0 0 chr15 43907166 43907194 -41788560 + AT_rich Low_complexity Low_complexity 1 28 0 2501 64 0 0 chr15 43907194 43907489 -41788265 - AluY SINE Alu -16 295 1 2293 101 0 7 chr15 43907548 43907854 -41787900 - AluSc SINE Alu -5 304 1 2514 65 0 10 chr15 43907864 43908172 -41787582 - AluY SINE Alu -6 305 1 2296 94 3 3 chr15 43908174 43908471 -41787283 - AluSp SINE Alu -15 298 2 234 286 10 10 chr15 43908635 43908733 -41787021 - L2 LINE L2 -338 2975 2878 585 201 124 53 chr15 43908799 43908975 -41786779 - MIR SINE MIR -37 225 30 2299 91 0 0 chr15 43908975 43909262 -41786492 - AluY SINE Alu -24 287 1 585 201 124 53 chr15 43909262 43909294 -41786460 - MIR SINE MIR -232 30 2 204 269 322 1 chr15 43909572 43909672 -41786082 + MIR SINE MIR 17 150 -58 2206 95 0 7 chr15 43909756 43910064 -41785690 + AluSx SINE Alu 1 306 0 977 120 0 0 chr15 43910084 43910217 -41785537 + AluJb SINE Alu 1 133 -179 2065 139 0 13 chr15 43910222 43910525 -41785229 + AluSx SINE Alu 1 299 -13 2057 117 3 7 chr15 43910527 43910835 -41784919 + AluSx SINE Alu 1 307 0 2264 113 3 7 chr15 43910846 43911155 -41784599 + AluSx SINE Alu 1 308 -4 1909 111 24 0 chr15 43911180 43911432 -41784322 + AluSq SINE Alu 1 258 -55 183 239 152 0 chr15 43911631 43911677 -41784077 - L2 LINE L2 -2 3270 3218 195 129 0 0 chr15 43912187 43912218 -41783536 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 372 133 0 0 chr15 43912219 43912279 -41783475 + (TCC)n Simple_repeat Simple_repeat 1 60 0 2321 96 7 0 chr15 43912279 43912572 -41783182 - AluSq SINE Alu -18 295 1 2493 175 34 59 chr15 43912750 43913266 -41782488 - L1MB8 LINE L1 0 6178 5677 2537 84 7 0 chr15 43913266 43913574 -41782180 - AluSx SINE Alu 0 312 3 2493 175 34 59 chr15 43913574 43913650 -41782104 - L1MB8 LINE L1 -501 5677 5601 218 32 32 0 chr15 43913655 43913686 -41782068 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1145 170 5 5 chr15 43913692 43913886 -41781868 - AluJo SINE Alu -2 310 117 1721 193 37 3 chr15 43913886 43914234 -41781520 - L1MB8 LINE L1 -1172 4974 4615 683 248 13 7 chr15 43914245 43914394 -41781360 - MIR SINE MIR -85 177 28 1834 164 14 0 chr15 43915311 43915598 -41780156 - AluJb SINE Alu -21 291 1 639 172 0 0 chr15 43915897 43916017 -41779737 - AluSg/x SINE Alu 0 309 190 970 220 172 35 chr15 43916046 43916496 -41779258 + MLT1G1 LTR MaLR 1 559 -36 461 73 0 0 chr15 43916496 43916564 -41779190 + FAM SINE Alu 118 185 0 2206 112 14 0 chr15 43916567 43916862 -41778892 + AluY SINE Alu 1 299 -12 2060 139 0 3 chr15 43916864 43917159 -41778595 + AluSx SINE Alu 2 295 -17 2168 107 10 7 chr15 43917495 43917793 -41777961 - AluSx SINE Alu -13 299 1 776 118 17 8 chr15 43917824 43917943 -41777811 - AluSg/x SINE Alu -16 293 174 751 44 0 0 chr15 43918043 43918133 -41777621 + AluSp/q SINE Alu 209 298 -15 591 230 13 13 chr15 43918133 43918285 -41777469 - MER3 DNA MER1_type -57 152 1 335 159 0 0 chr15 43918590 43918659 -41777095 - FLAM_A SINE Alu 0 133 65 475 335 36 44 chr15 43918677 43918928 -41776826 + MIR SINE MIR 4 252 -10 199 186 70 0 chr15 43920866 43920909 -41774845 - L2 LINE L2 -3 3310 3265 2099 160 0 3 chr15 43921002 43921284 -41774470 + AluJb SINE Alu 1 283 -29 381 117 0 0 chr15 43921284 43921344 -41774410 + (CA)n Simple_repeat Simple_repeat 1 60 0 2099 160 0 3 chr15 43921344 43921373 -41774381 + AluJb SINE Alu 283 311 -1 391 257 146 35 chr15 43921511 43921655 -41774099 - MIR SINE MIR -87 175 16 340 304 25 57 chr15 43922178 43922195 -41773559 + MIR3 SINE MIR 39 55 -153 2467 68 0 7 chr15 43922195 43922490 -41773264 - AluSx SINE Alu -19 293 1 340 304 25 57 chr15 43922490 43922630 -41773124 + MIR3 SINE MIR 55 191 -17 398 279 123 39 chr15 43923025 43923179 -41772575 + MIR3 SINE MIR 32 198 -10 4095 98 4 18 chr15 43923208 43923380 -41772374 + MER41A LTR ERV1 1 174 -380 2326 98 0 16 chr15 43923380 43923719 -41772035 + AluSp SINE Alu 1 313 0 4095 98 4 18 chr15 43923719 43924108 -41771646 + MER41A LTR ERV1 174 554 0 5019 140 77 10 chr15 43924194 43925773 -41769981 + MER41A-int LTR ERV1 3 1775 -4171 691 75 0 0 chr15 43925757 43925851 -41769903 + MER41A-int LTR ERV1 1950 2043 -4220 * 2002 118 3 67 chr15 43925851 43926181 -41769573 - AluSx SINE Alu -3 309 1 2391 103 0 0 chr15 43926192 43926493 -41769261 - AluSx SINE Alu -11 301 1 10895 89 32 5 chr15 43926496 43926986 -41768768 + MER41A-int LTR ERV1 2716 3191 -2755 2523 74 7 0 chr15 43926986 43927284 -41768470 + AluY SINE Alu 1 300 -11 10895 89 32 5 chr15 43927284 43928932 -41766822 + MER41A-int LTR ERV1 3191 5703 -243 380 70 0 18 chr15 43928933 43928990 -41766764 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2272 86 3 0 chr15 43928991 43929281 -41766473 - AluY SINE Alu -20 291 1 3114 91 37 15 chr15 43929282 43929624 -41766130 + MER41A LTR ERV1 84 440 -114 2230 132 0 0 chr15 43929624 43929934 -41765820 - AluSq SINE Alu 0 313 4 3114 91 37 15 chr15 43929934 43930052 -41765702 + MER41A LTR ERV1 440 554 0 348 316 35 58 chr15 43930238 43930412 -41765342 + L2 LINE L2 3096 3265 -7 226 272 48 68 chr15 43930468 43930571 -41765183 + MIR3 SINE MIR 58 158 -50 436 313 7 20 chr15 43930581 43930731 -41765023 - MER5B DNA MER1_type -3 175 28 21 0 0 0 chr15 43930903 43930924 -41764830 + GC_rich Low_complexity Low_complexity 1 21 0 34 93 0 0 chr15 43931204 43931301 -41764453 + GC_rich Low_complexity Low_complexity 1 97 0 2112 119 0 7 chr15 43932580 43932883 -41762871 - AluSx SINE Alu -11 301 1 1818 163 3 3 chr15 43933836 43934131 -41761623 - AluJb SINE Alu -11 301 7 755 159 83 0 chr15 43934393 43934525 -41761229 - FRAM SINE Alu -6 170 28 1870 136 31 0 chr15 43934558 43934844 -41760910 - AluSx SINE Alu -17 295 1 325 133 24 0 chr15 43936416 43936479 -41759275 - Alu SINE Alu -254 48 1 2213 112 0 3 chr15 43936919 43937232 -41758522 + AluSx SINE Alu 1 312 0 340 294 10 20 chr15 43937475 43937577 -41758177 - L3 LINE CR1 -613 964 864 197 302 81 0 chr15 43937658 43937744 -41758010 + MIR SINE MIR 77 169 -93 252 234 19 136 chr15 43937853 43938007 -41757747 + MIR SINE MIR 14 149 -113 1905 151 3 3 chr15 43938009 43938308 -41757446 + AluSp SINE Alu 1 299 -14 198 0 0 0 chr15 43939672 43939694 -41756060 + (T)n Simple_repeat Simple_repeat 1 22 0 597 239 116 0 chr15 43941436 43941591 -41754163 - MIR SINE MIR -72 190 18 286 234 9 5 chr15 43942252 43942373 -41753381 - MER91A DNA MER1_type -21 175 1 472 235 22 37 chr15 43943088 43943224 -41752530 - MIR SINE MIR -57 151 18 229 302 0 0 chr15 43947783 43947846 -41747908 - MIR SINE MIR -65 143 81 1386 153 0 14 chr15 43950275 43950446 -41745308 - AluJo SINE Alu -8 304 135 2204 123 0 0 chr15 43950446 43950756 -41744998 - AluSg SINE Alu 0 310 1 1386 153 0 14 chr15 43950756 43950807 -41744947 - AluJo SINE Alu -177 135 85 216 390 19 13 chr15 43951937 43952091 -41743663 - L3 LINE CR1 -122 1455 1301 2207 116 7 0 chr15 43952094 43952404 -41743350 - AluSx SINE Alu 0 312 1 620 144 117 0 chr15 43952411 43952522 -41743232 + MER33 DNA MER1_type 9 132 -192 1700 126 92 0 chr15 43952537 43952830 -41742924 + L1M3 LINE L1 5404 5723 -460 1616 78 0 30 chr15 43952930 43953160 -41742594 - AluSg1 SINE Alu -86 223 1 434 172 83 105 chr15 43953216 43953378 -41742376 + MLT1H LTR MaLR 10 135 -274 246 297 0 0 chr15 43953495 43953569 -41742185 + MLT1H LTR MaLR 303 376 -179 1659 189 7 0 chr15 43953612 43953909 -41741845 - AluJo SINE Alu -9 303 5 2050 119 0 0 chr15 43953925 43954210 -41741544 - AluSx SINE Alu -13 299 15 368 40 20 0 chr15 43954348 43954398 -41741356 + (TC)n Simple_repeat Simple_repeat 2 52 0 185 0 0 39 chr15 43954419 43954445 -41741309 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2123 119 0 3 chr15 43954456 43954766 -41740988 - AluSg SINE Alu -1 309 1 215 276 146 8 chr15 43955527 43955650 -41740104 - MIR SINE MIR -6 256 117 582 238 73 44 chr15 43955815 43956021 -41739733 - MIR SINE MIR -8 254 43 367 288 54 0 chr15 43956029 43956140 -41739614 + MER5A DNA MER1_type 73 189 0 583 248 95 50 chr15 43956470 43956530 -41739224 + MER46C DNA MER2_type 1 57 -281 2133 111 0 22 chr15 43956530 43956845 -41738909 - AluSx SINE Alu -4 308 1 583 248 95 50 chr15 43956845 43957026 -41738728 + MER46C DNA MER2_type 57 253 -85 375 221 23 0 chr15 43957573 43957659 -41738095 + MER46C DNA MER2_type 251 338 0 2183 110 0 3 chr15 43958268 43958569 -41737185 + AluSc SINE Alu 1 300 -9 571 213 57 0 chr15 43958660 43958782 -41736972 + FLAM_A SINE Alu 1 129 -4 1608 160 10 51 chr15 43958868 43959181 -41736573 + AluJb SINE Alu 1 300 -12 252 211 19 0 chr15 43959281 43959333 -41736421 - L2 LINE L2 -3 3269 3217 1977 113 7 3 chr15 43959424 43959716 -41736038 + AluSx SINE Alu 2 294 -18 565 271 72 6 chr15 43959947 43960128 -41735626 + MIR SINE MIR 63 255 -7 210 308 29 105 chr15 43960152 43960324 -41735430 - L2 LINE L2 -414 2900 2742 741 138 71 112 chr15 43960887 43960962 -41734792 - MER53 DNA DNA 0 189 112 1665 157 27 20 chr15 43960962 43961256 -41734498 - AluJb SINE Alu -16 296 1 741 138 71 112 chr15 43961256 43961304 -41734450 - MER53 DNA DNA -77 112 64 1907 128 3 3 chr15 43961304 43961586 -41734168 + AluSq SINE Alu 17 298 -15 741 138 71 112 chr15 43961586 43961657 -41734097 - MER53 DNA DNA -125 64 2 661 258 66 14 chr15 43962051 43962288 -41733466 - MIR SINE MIR 0 262 2 235 313 47 99 chr15 43962709 43962942 -41732812 - MER102b DNA MER1_type -13 328 108 320 266 46 18 chr15 43963784 43963893 -41731861 + MIR SINE MIR 140 251 -11 570 211 8 55 chr15 43964398 43964526 -41731228 + MER5B DNA MER1_type 50 171 -7 317 80 20 20 chr15 43964574 43964624 -41731130 + FLAM SINE Alu 62 111 -22 408 233 12 64 chr15 43964695 43964743 -41731011 + L1ME LINE L1 5573 5622 -499 1972 149 0 0 chr15 43964743 43965045 -41730709 + AluSx SINE Alu 1 302 -10 408 233 12 64 chr15 43965045 43965168 -41730586 + L1ME LINE L1 5622 5735 -386 384 277 248 0 chr15 43965487 43965628 -41730126 - MER5A DNA MER1_type 0 189 14 2234 90 0 3 chr15 43965996 43966296 -41729458 + AluSq SINE Alu 1 299 -14 1728 143 21 11 chr15 43966611 43966897 -41728857 - AluJb SINE Alu -23 289 1 24 0 0 0 chr15 43967560 43967584 -41728170 + AT_rich Low_complexity Low_complexity 1 24 0 796 157 0 0 chr15 43967744 43967859 -41727895 + FLAM_C SINE Alu 2 116 -27 190 218 0 91 chr15 43968364 43968419 -41727335 + L2 LINE L2 3263 3312 -1 764 308 77 13 chr15 43968730 43968924 -41726830 - L1M4 LINE L1 -2264 3882 3702 1893 86 79 21 chr15 43968924 43969214 -41726540 - AluSg SINE Alu -3 307 1 764 308 77 13 chr15 43969214 43969396 -41726358 - L1M4 LINE L1 -2444 3702 3482 1421 148 129 4 chr15 43969398 43969662 -41726092 - AluJo SINE Alu -4 308 12 2267 84 7 3 chr15 43969729 43970027 -41725727 - AluSp SINE Alu -14 299 1 314 263 0 74 chr15 43970178 43970273 -41725481 - L1M4 LINE L1 -2658 3488 3401 218 281 0 12 chr15 43971569 43971651 -41724103 + (CCCCG)n Simple_repeat Simple_repeat 2 82 0 338 297 30 0 chr15 43971927 43972028 -41723726 - MIR SINE MIR -65 143 40 192 303 28 64 chr15 43972637 43972746 -41723008 + MIR SINE MIR 19 123 -85 225 265 82 0 chr15 43972907 43973005 -41722749 - L1MC/D LINE L1 -2330 5478 5373 374 158 0 0 chr15 43973103 43973160 -41722594 - AluS SINE Alu -242 57 1 2257 110 0 0 chr15 43973432 43973741 -41722013 - AluSg SINE Alu -1 309 1 33 0 0 0 chr15 43973782 43973815 -41721939 + AT_rich Low_complexity Low_complexity 1 33 0 1854 161 26 3 chr15 43973845 43974150 -41721604 - AluJb SINE Alu 0 312 1 33 25 0 0 chr15 43974200 43974240 -41721514 + AT_rich Low_complexity Low_complexity 1 40 0 2568 11 0 0 chr15 43974253 43974585 -41721169 - AluYb8 SINE Alu 0 332 1 2321 44 40 0 chr15 43974892 43975189 -41720565 - AluYa5 SINE Alu -2 309 1 1619 106 63 73 chr15 43975200 43975383 -41720371 - AluSx SINE Alu -1 311 131 1859 85 44 0 chr15 43975383 43975631 -41720123 - AluSq SINE Alu -54 259 1 1619 106 63 73 chr15 43975631 43975749 -41720005 - AluSx SINE Alu -181 131 13 390 331 80 0 chr15 43975862 43976013 -41719741 + L2 LINE L2 3107 3269 -3 594 200 17 9 chr15 43976079 43976194 -41719560 - FLAM_C SINE Alu -12 131 16 312 207 0 0 chr15 43976435 43976493 -41719261 + MLT1G LTR MaLR 2 59 -508 1912 141 31 0 chr15 43976493 43976783 -41718971 + AluSx SINE Alu 1 299 -13 673 249 109 66 chr15 43976787 43977201 -41718553 + MLT1G LTR MaLR 113 551 -4 268 189 74 32 chr15 43977441 43977536 -41718218 + L1ME4a LINE L1 6020 6118 -3 921 132 0 20 chr15 43977574 43977684 -41718070 + L1MB3 LINE L1 6033 6141 -42 1742 182 0 3 chr15 43977684 43977992 -41717762 + AluJb SINE Alu 1 307 -5 921 132 0 20 chr15 43977992 43978033 -41717721 + L1MB3 LINE L1 6141 6181 -2 682 243 69 49 chr15 43978403 43978504 -41717250 + HAL1 LINE L1 1981 2078 -429 1872 143 0 3 chr15 43978504 43978791 -41716963 + AluSx SINE Alu 9 294 -18 682 243 69 49 chr15 43978791 43979035 -41716719 + HAL1 LINE L1 2078 2333 -174 296 274 128 0 chr15 43979809 43979911 -41715843 + L2 LINE L2 2945 3059 -213 307 264 66 11 chr15 43979951 43980042 -41715712 - MIR SINE MIR -27 235 140 281 187 33 140 chr15 43980098 43980248 -41715506 + MIR SINE MIR 70 203 -59 2156 114 0 13 chr15 43980401 43980707 -41715047 + AluSx SINE Alu 1 302 -10 207 290 203 22 chr15 43981054 43981192 -41714562 - MIR SINE MIR -80 182 20 441 0 0 0 chr15 43981348 43981397 -41714357 + (TG)n Simple_repeat Simple_repeat 2 50 0 1936 145 0 7 chr15 43981408 43981567 -41714187 - AluJo SINE Alu -17 295 137 2345 71 0 0 chr15 43981567 43981862 -41713892 - AluY SINE Alu -16 295 1 1936 145 0 7 chr15 43981862 43981999 -41713755 - AluJo SINE Alu -175 137 1 262 274 21 32 chr15 43982096 43982191 -41713563 + MIR SINE MIR 31 124 -84 * 402 235 118 22 chr15 43982190 43982326 -41713428 + MIR3 SINE MIR 35 183 -25 300 364 66 7 chr15 43982519 43982670 -41713084 + MIR3 SINE MIR 38 197 -11 2051 112 0 0 chr15 43982700 43982968 -41712786 - AluSx SINE Alu -44 268 1 444 286 30 54 chr15 43982973 43983141 -41712613 - MER5B DNA MER1_type -8 170 7 1050 90 8 0 chr15 43983504 43983638 -41712116 + AluSq/x SINE Alu 1 135 -178 1780 178 3 3 chr15 43983638 43983941 -41711813 + AluJb SINE Alu 1 303 -9 302 239 98 0 chr15 43983999 43984091 -41711663 + L2 LINE L2 3208 3308 -5 1667 159 64 0 chr15 43984980 43985244 -41710510 - AluJo SINE Alu -31 281 1 1846 174 3 0 chr15 43985268 43985555 -41710199 - AluJb SINE Alu -22 290 3 2040 138 3 7 chr15 43985809 43986105 -41709649 - AluSx SINE Alu -17 295 1 229 315 14 0 chr15 43986188 43986261 -41709493 - Charlie4 DNA MER1_type -4 1957 1884 2006 125 43 13 chr15 43986437 43986740 -41709014 + AluSx SINE Alu 1 312 0 2441 68 7 23 chr15 43986809 43987119 -41708635 + AluY SINE Alu 1 305 -6 25 31 0 0 chr15 43988208 43988240 -41707514 + AT_rich Low_complexity Low_complexity 1 32 0 314 343 6 34 chr15 43988268 43988443 -41707311 + MIR3 SINE MIR 37 206 -2 229 305 64 91 chr15 43988854 43988952 -41706802 + MER5A DNA MER1_type 7 99 -90 2261 121 0 7 chr15 43988952 43989258 -41706496 - AluSx SINE Alu -8 304 1 229 305 64 91 chr15 43989258 43989346 -41706408 + MER5A DNA MER1_type 99 188 -1 270 0 0 0 chr15 43989921 43989951 -41705803 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 189 0 0 0 chr15 43991657 43991678 -41704076 + (T)n Simple_repeat Simple_repeat 1 21 0 3630 202 100 9 chr15 43992271 43993143 -41702611 + Charlie1a DNA MER1_type 8 958 -497 853 223 13 77 chr15 43993143 43993376 -41702378 + AluJo SINE Alu 1 218 -94 24 0 0 0 chr15 43993408 43993432 -41702322 + AT_rich Low_complexity Low_complexity 1 24 0 2405 84 0 0 chr15 43993432 43993728 -41702026 + AluY SINE Alu 1 296 -15 344 191 75 64 chr15 43993729 43993823 -41701931 - L1MC4 LINE L1 -1339 6703 6609 459 107 50 14 chr15 43993823 43993963 -41701791 + (TA)n Simple_repeat Simple_repeat 2 146 0 1980 132 4 7 chr15 43993968 43994249 -41701505 + AluSx SINE Alu 3 282 -30 1584 165 3 84 chr15 43994367 43994700 -41701054 + AluJb SINE Alu 6 311 -1 248 294 0 112 chr15 43995391 43995534 -41700220 - MIR3 SINE MIR -6 202 76 2441 68 0 16 chr15 43996059 43996368 -41699386 - AluSx SINE Alu -8 304 1 589 248 77 1 chr15 43997422 43997597 -41698157 + MIR SINE MIR 37 222 -40 1907 168 20 0 chr15 43997814 43998118 -41697636 + AluJb SINE Alu 1 310 -2 416 234 56 19 chr15 43998262 43998369 -41697385 + MIR3 SINE MIR 77 187 -21 1786 138 38 21 chr15 43998999 43999136 -41696618 + AluJo SINE Alu 1 134 -178 2334 99 3 0 chr15 43999136 43999439 -41696315 + AluSq SINE Alu 1 304 -9 1786 138 38 21 chr15 43999439 43999592 -41696162 + AluJo SINE Alu 134 296 -16 2371 105 0 10 chr15 44000286 44000600 -41695154 + AluSx SINE Alu 1 311 -1 1101 71 0 0 chr15 44000600 44000776 -41694978 + L1PA3 LINE L1 5993 6168 0 282 29 0 0 chr15 44001379 44001414 -41694340 + (CA)n Simple_repeat Simple_repeat 1 35 0 202 220 20 0 chr15 44002074 44002124 -41693630 + GA-rich Low_complexity Low_complexity 1 51 0 307 243 14 0 chr15 44002504 44002578 -41693176 - MIR3 SINE MIR -52 156 82 2019 121 36 0 chr15 44003449 44003730 -41692024 + AluSx SINE Alu 1 291 -21 849 120 0 0 chr15 44003730 44003863 -41691891 + (TA)n Simple_repeat Simple_repeat 2 134 0 24 0 0 0 chr15 44003965 44003989 -41691765 + AT_rich Low_complexity Low_complexity 1 24 0 811 139 0 23 chr15 44004002 44004131 -41691623 - AluJo SINE Alu -178 134 9 470 237 0 0 chr15 44004135 44004232 -41691522 - MIR SINE MIR -117 145 49 672 282 24 40 chr15 44004398 44004650 -41691104 - MIR SINE MIR -7 255 8 244 287 287 0 chr15 44004711 44004847 -41690907 + MER5A DNA MER1_type 9 183 -6 268 315 181 0 chr15 44005377 44005526 -41690228 - MIR SINE MIR -15 247 72 613 265 84 42 chr15 44006851 44007066 -41688688 + MIR SINE MIR 34 257 -5 2165 128 0 3 chr15 44007069 44007366 -41688388 + AluSx SINE Alu 3 298 -14 532 263 38 25 chr15 44008805 44008965 -41686789 - MIR SINE MIR -67 195 34 237 305 8 42 chr15 44009028 44009146 -41686608 + MIR SINE MIR 83 196 -66 24 67 0 0 chr15 44009801 44009846 -41685908 + GC_rich Low_complexity Low_complexity 1 45 0 213 94 0 0 chr15 44010915 44010947 -41684807 + (CAG)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr15 44010957 44010979 -41684775 + GC_rich Low_complexity Low_complexity 1 22 0 223 197 0 56 chr15 44011071 44011142 -41684612 + (CTGGGG)n Simple_repeat Simple_repeat 4 70 0 246 293 0 0 chr15 44011261 44011336 -41684418 + C-rich Low_complexity Low_complexity 1 75 0 240 143 18 3 chr15 44012256 44012479 -41683275 + AluJb SINE Alu 1 302 0 2316 94 0 7 chr15 44012594 44012892 -41682862 + AluSx SINE Alu 10 305 -7 2307 87 0 0 chr15 44013978 44014253 -41681501 + AluSx SINE Alu 1 275 -37 279 0 0 0 chr15 44014262 44014293 -41681461 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1581 189 10 21 chr15 44014313 44014604 -41681150 + AluJo SINE Alu 9 296 -16 201 74 0 0 chr15 44015622 44015649 -41680105 + (A)n Simple_repeat Simple_repeat 1 27 0 713 196 10 93 chr15 44020141 44020247 -41675507 + MER45A DNA AcHobo 1 114 -1467 1951 151 0 30 chr15 44020247 44020551 -41675203 - AluJb SINE Alu -17 295 1 2522 68 0 16 chr15 44020557 44020868 -41674886 - AluY SINE Alu -5 306 1 713 196 10 93 chr15 44020868 44020948 -41674806 + MER45A DNA AcHobo 119 178 0 1010 120 0 7 chr15 44021043 44021179 -41674575 + AluSq/x SINE Alu 1 136 -171 2457 87 7 0 chr15 44021179 44021477 -41674277 + AluSq SINE Alu 1 300 -13 207 283 57 0 chr15 44023660 44023713 -41672041 - MIR SINE MIR -90 172 117 857 217 78 18 chr15 44023807 44024024 -41671730 + MIR SINE MIR 27 256 -6 385 254 91 9 chr15 44024034 44024144 -41671610 + L2 LINE L2 3195 3313 0 181 286 0 79 chr15 44024149 44024166 -41671588 - MIR3 SINE MIR -141 67 50 2244 122 10 0 chr15 44024166 44024462 -41671292 + AluSx SINE Alu 1 299 -13 181 286 0 79 chr15 44024462 44024507 -41671247 - MIR3 SINE MIR -158 50 10 367 236 65 0 chr15 44024576 44024708 -41671046 + MIR3 SINE MIR 3 148 -79 518 281 36 24 chr15 44026022 44026189 -41669565 - MIR SINE MIR -24 238 70 207 244 0 61 chr15 44027125 44027207 -41668547 + C-rich Low_complexity Low_complexity 3 79 0 729 200 0 0 chr15 44027211 44027341 -41668413 - FRAM SINE Alu -7 169 40 203 264 161 11 chr15 44027341 44027428 -41668326 - MIR SINE MIR -66 142 43 217 264 33 20 chr15 44027785 44027886 -41667868 - MIR SINE MIR -71 137 52 396 186 113 57 chr15 44028040 44028164 -41667590 + MIR SINE MIR 18 148 -60 258 257 108 68 chr15 44030349 44030497 -41665257 + MIR SINE MIR 109 262 0 247 217 98 0 chr15 44030663 44030755 -41664999 + L1P4 LINE L1 5332 5432 -734 919 128 0 0 chr15 44030763 44030896 -41664858 + FLAM_C SINE Alu 1 133 0 914 299 108 9 chr15 44031004 44031465 -41664289 + L1ME4a LINE L1 5615 6121 0 2399 112 0 0 chr15 44031467 44031779 -41663975 + AluSx SINE Alu 1 312 0 2140 74 3 44 chr15 44031812 44032141 -41663613 + AluY SINE Alu 1 317 0 228 197 30 45 chr15 44032317 44032383 -41663371 - MER5A DNA MER1_type -87 102 38 1615 157 92 11 chr15 44032406 44032687 -41663067 + AluJo SINE Alu 3 306 -6 215 306 12 35 chr15 44032702 44032787 -41662967 + MER5A DNA MER1_type 107 189 0 336 225 25 67 chr15 44033242 44033362 -41662392 + MIR SINE MIR 108 222 -40 240 304 98 11 chr15 44033473 44033565 -41662189 + L2 LINE L2 3137 3236 -36 190 328 17 0 chr15 44034198 44034256 -41661498 - MIR SINE MIR -49 213 155 416 304 22 7 chr15 44034477 44034612 -41661142 + MIR3 SINE MIR 23 159 -49 192 188 0 0 chr15 44034896 44034928 -41660826 - L2 LINE L2 -19 3253 3222 253 355 2 4 chr15 44034985 44035079 -41660675 - MIR SINE MIR -111 97 5 205 275 50 93 chr15 44035332 44035514 -41660240 + MIR3 SINE MIR 14 187 -21 1071 261 107 37 chr15 44035761 44035802 -41659952 + L1MC4a LINE L1 5401 5438 -2370 2440 67 7 0 chr15 44035802 44036100 -41659654 + AluSp SINE Alu 1 300 -13 1071 261 107 37 chr15 44036100 44036487 -41659267 + L1MC4a LINE L1 5438 5859 -1949 322 353 128 0 chr15 44036710 44036866 -41658888 - MIR SINE MIR -55 207 32 312 102 0 0 chr15 44037879 44037928 -41657826 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1717 142 0 4 chr15 44038021 44038274 -41657480 + AluJb SINE Alu 38 289 -23 345 331 78 21 chr15 44038315 44038557 -41657197 + L1ME4a LINE L1 5848 6103 -18 269 219 124 67 chr15 44038678 44038783 -41656971 + MIR3 SINE MIR 83 193 -15 771 201 48 19 chr15 44039401 44039610 -41656144 - MER113 DNA MER1_type? -306 215 1 22 0 0 0 chr15 44040191 44040213 -41655541 + AT_rich Low_complexity Low_complexity 1 22 0 289 175 68 78 chr15 44040316 44040419 -41655335 + MIR SINE MIR 66 167 -95 2183 117 0 0 chr15 44040554 44040858 -41654896 - AluSx SINE Alu 0 304 1 1983 74 0 39 chr15 44040893 44041150 -41654604 - AluSg SINE Alu -63 247 1 940 119 15 0 chr15 44041150 44041284 -41654470 - AluJb SINE Alu -176 136 1 352 252 36 9 chr15 44041343 44041454 -41654300 + MIR SINE MIR 137 250 -12 300 227 27 0 chr15 44041729 44041804 -41653950 + MER103 DNA DNA 8 84 -82 1654 168 37 20 chr15 44042055 44042352 -41653402 - AluJb SINE Alu -10 302 1 324 286 41 20 chr15 44043045 44043143 -41652611 + MIR3 SINE MIR 62 161 -47 296 245 39 24 chr15 44044848 44044949 -41650805 + MIR SINE MIR 26 121 -87 2150 155 87 18 chr15 44044973 44045411 -41650343 + L1MB8 LINE L1 5699 6166 -12 1236 162 0 10 chr15 44045419 44045617 -41650137 + AluJo SINE Alu 84 279 -33 2546 87 0 0 chr15 44045633 44045942 -41649812 + AluSg SINE Alu 1 309 -1 203 176 0 0 chr15 44045942 44045976 -41649778 + L2 LINE L2 3218 3251 -21 1237 176 141 27 chr15 44046047 44046303 -41649451 + AluJo SINE Alu 1 285 -17 189 0 0 0 chr15 44046325 44046346 -41649408 + (TC)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr15 44046348 44046373 -41649381 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 0 0 0 chr15 44046430 44046462 -41649292 + (TG)n Simple_repeat Simple_repeat 1 32 0 249 211 184 13 chr15 44046734 44046810 -41648944 - MIR3 SINE MIR -105 103 15 450 216 194 7 chr15 44047219 44047358 -41648396 + MIR3 SINE MIR 35 199 -9 229 315 0 0 chr15 44047749 44047803 -41647951 - L2 LINE L2 -86 3186 3133 314 264 165 9 chr15 44047860 44048035 -41647719 + MIR SINE MIR 42 250 -12 1707 155 8 0 chr15 44048040 44048298 -41647456 - AluSx SINE Alu -7 305 46 296 122 0 0 chr15 44048351 44048392 -41647362 - AluSx SINE Alu -257 42 2 238 158 0 0 chr15 44049013 44049051 -41646703 - MIR SINE MIR -62 146 109 332 302 1 47 chr15 44049338 44049445 -41646309 + MIR SINE MIR 44 148 -60 2626 43 20 0 chr15 44049538 44049840 -41645914 - AluY SINE Alu -3 308 1 2159 104 3 27 chr15 44051002 44051299 -41644455 - AluSx SINE Alu -22 290 1 442 229 136 17 chr15 44051325 44051443 -41644311 + L2 LINE L2 3182 3313 0 274 271 127 17 chr15 44051491 44051609 -41644145 + MIR SINE MIR 108 238 -24 277 354 76 0 chr15 44051663 44051807 -41643947 - L3 LINE CR1 -111 1466 1312 328 220 175 96 chr15 44052326 44052445 -41643309 + MIR3 SINE MIR 17 156 -52 1598 167 13 58 chr15 44052445 44052757 -41642997 - AluJo SINE Alu -1 311 14 328 220 175 96 chr15 44052757 44052814 -41642940 + MIR3 SINE MIR 156 207 -1 2404 106 0 0 chr15 44053338 44053650 -41642104 - AluSx SINE Alu 0 312 1 682 285 128 52 chr15 44053659 44054426 -41641328 + L2 LINE L2 2470 3272 0 378 0 0 0 chr15 44055923 44055965 -41639789 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr15 44056236 44056268 -41639486 + GC_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr15 44056284 44056305 -41639449 + (CCG)n Simple_repeat Simple_repeat 2 22 0 222 231 0 26 chr15 44056360 44056438 -41639316 + G-rich Low_complexity Low_complexity 4 79 0 427 298 35 16 chr15 44056998 44057154 -41638600 - MIR3 SINE MIR -75 133 3 255 324 0 42 chr15 44057292 44057363 -41638391 + L3b LINE CR1 1513 1580 -3 360 169 0 14 chr15 44057488 44057559 -41638195 + L2 LINE L2 1931 2000 -1314 1973 239 158 43 chr15 44057559 44057814 -41637940 + L2 LINE L2 2167 2391 -922 932 108 0 8 chr15 44057814 44057944 -41637810 + FLAM_C SINE Alu 1 129 -4 1973 239 158 43 chr15 44057944 44058504 -41637250 + L2 LINE L2 2391 2885 -428 1866 119 94 3 chr15 44058504 44058790 -41636964 - AluSx SINE Alu 0 312 1 1973 239 158 43 chr15 44058790 44058802 -41636952 + L2 LINE L2 2885 2894 -419 2413 97 0 3 chr15 44058802 44059112 -41636642 - AluSx SINE Alu -3 309 1 1973 239 158 43 chr15 44059112 44059276 -41636478 + L2 LINE L2 2894 3285 -28 261 280 163 50 chr15 44059632 44059914 -41635840 - L2 LINE L2 -14 3258 2945 461 248 38 30 chr15 44060135 44060268 -41635486 + MIR3 SINE MIR 36 169 -39 2361 96 0 16 chr15 44060340 44060652 -41635102 + AluSq SINE Alu 1 307 -6 2123 125 0 3 chr15 44060873 44061169 -41634585 + AluJb SINE Alu 1 295 -17 48 18 0 0 chr15 44061514 44061569 -41634185 + AT_rich Low_complexity Low_complexity 1 55 0 1908 163 90 38 chr15 44061593 44061684 -41634070 + Charlie1 DNA MER1_type 2257 2342 -419 2258 112 3 0 chr15 44061684 44061978 -41633776 - AluSx SINE Alu -17 295 1 1908 163 90 38 chr15 44061978 44062224 -41633530 + Charlie1 DNA MER1_type 2342 2629 -132 2360 115 0 0 chr15 44062224 44062536 -41633218 - AluSp SINE Alu -1 312 1 1908 163 90 38 chr15 44062536 44062677 -41633077 + Charlie1 DNA MER1_type 2629 2761 0 23 0 0 0 chr15 44063581 44063604 -41632150 + AT_rich Low_complexity Low_complexity 1 23 0 1957 136 3 23 chr15 44063911 44064220 -41631534 + AluJb SINE Alu 1 303 -9 2122 113 10 14 chr15 44064962 44065273 -41630481 + AluSx SINE Alu 1 312 0 619 186 42 8 chr15 44065435 44065553 -41630201 - L2 LINE L2 0 3272 3151 216 216 0 0 chr15 44065701 44065752 -41630002 + (CATA)n Simple_repeat Simple_repeat 2 52 0 676 104 5 2 chr15 44065761 44066021 -41629733 + AluSx SINE Alu 1 310 0 2044 108 3 90 chr15 44066100 44066432 -41629322 + AluSx SINE Alu 1 303 -9 2325 104 10 3 chr15 44066792 44067099 -41628655 - AluSx SINE Alu -3 309 1 295 343 98 39 chr15 44067165 44067369 -41628385 - L3b LINE CR1 -120 1463 1248 1981 157 3 6 chr15 44067395 44067708 -41628046 - AluJb SINE Alu 0 312 1 195 42 0 0 chr15 44067897 44067921 -41627833 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 227 270 0 32 chr15 44068127 44068190 -41627564 + L3b LINE CR1 1263 1323 -260 416 324 103 32 chr15 44069076 44069261 -41626493 + L2 LINE L2 2804 3001 -312 2157 116 3 7 chr15 44069349 44069650 -41626104 + AluSx SINE Alu 1 300 -12 1222 129 65 5 chr15 44069657 44069843 -41625911 - AluJo SINE Alu -17 295 99 486 260 75 7 chr15 44069844 44069990 -41625764 + L2 LINE L2 3158 3313 0 959 191 6 0 chr15 44070071 44070233 -41625521 - FRAM SINE Alu -3 163 1 183 265 41 0 chr15 44070491 44070540 -41625214 + L2 LINE L2 3258 3308 -5 2181 132 0 0 chr15 44070541 44070837 -41624917 - AluSx SINE Alu -16 296 1 839 117 0 0 chr15 44071336 44071447 -41624307 - AluJo SINE Alu -201 111 1 1839 163 34 3 chr15 44071450 44071744 -41624010 - AluJo SINE Alu -9 303 1 2348 108 0 0 chr15 44071950 44072245 -41623509 + AluSx SINE Alu 1 295 -17 959 95 65 12 chr15 44072269 44072437 -41623317 - L1MB4 LINE L1 0 6180 6004 1057 411 10 27 chr15 44072440 44072737 -41623017 + AluSx SINE Alu 4 295 -7 4113 138 26 41 chr15 44072761 44072932 -41622822 - L1MB4 LINE L1 0 6180 6008 2044 135 7 3 chr15 44072932 44073235 -41622519 + AluSx SINE Alu 4 307 -5 4113 138 26 41 chr15 44073235 44073876 -41621878 - L1MB4 LINE L1 -172 6008 5380 1785 146 43 7 chr15 44073924 44074204 -41621550 - AluJo SINE Alu -22 290 1 2108 121 10 3 chr15 44074378 44074668 -41621086 - AluSg SINE Alu -18 292 1 2205 127 0 0 chr15 44074738 44075038 -41620716 - AluSx SINE Alu -12 300 1 2167 102 3 3 chr15 44075365 44075648 -41620106 - AluSc SINE Alu -26 283 1 2297 107 0 10 chr15 44076026 44076326 -41619428 + AluSq SINE Alu 1 297 -16 200 238 0 0 chr15 44076482 44076524 -41619230 + (TA)n Simple_repeat Simple_repeat 2 43 0 2523 73 0 10 chr15 44076851 44077165 -41618589 + AluY SINE Alu 1 311 0 1883 158 0 26 chr15 44077169 44077473 -41618281 + AluJb SINE Alu 1 296 -16 2383 110 3 0 chr15 44077926 44078236 -41617518 - AluSq SINE Alu -2 311 1 2185 93 41 3 chr15 44078335 44078626 -41617128 - AluY SINE Alu -9 302 1 2006 163 3 0 chr15 44078901 44079208 -41616546 - AluSx SINE Alu -4 308 1 1391 229 20 20 chr15 44080143 44080448 -41615306 - AluJo SINE Alu -7 305 1 2008 164 3 3 chr15 44080983 44081281 -41614473 + AluJo SINE Alu 1 298 -14 1023 133 10 79 chr15 44082013 44082216 -41613538 + THE1B LTR MaLR 176 364 0 1066 191 22 0 chr15 44082219 44082397 -41613357 + AluJo SINE Alu 109 290 -22 1610 128 67 83 chr15 44082450 44082638 -41613116 - AluJo SINE Alu 0 333 144 2191 142 0 0 chr15 44082638 44082947 -41612807 - AluSq SINE Alu -4 309 1 1610 128 67 83 chr15 44082947 44082984 -41612770 - AluJo SINE Alu -189 144 108 2449 81 0 0 chr15 44082984 44083281 -41612473 - AluSp SINE Alu -14 299 3 1610 128 67 83 chr15 44083281 44083389 -41612365 - AluJo SINE Alu -225 108 4 213 294 95 56 chr15 44083520 44083646 -41612108 + L2 LINE L2 3173 3303 -10 735 190 14 60 chr15 44083782 44083855 -41611899 - REP3 LTR ERV 0 562 487 2501 67 0 0 chr15 44083855 44084155 -41611599 - AluY SINE Alu -11 300 1 735 190 14 60 chr15 44084155 44084266 -41611488 - REP3 LTR ERV -75 487 382 391 206 41 0 chr15 44084266 44084339 -41611415 - MER2 DNA MER2_type 0 345 270 1207 133 0 11 chr15 44084345 44084358 -41611396 + AluSg/x SINE Alu 118 130 -180 2279 102 7 0 chr15 44084358 44084662 -41611092 + AluSx SINE Alu 1 306 -6 1207 133 0 11 chr15 44084662 44084828 -41610926 + AluSg/x SINE Alu 130 295 -15 1309 121 6 0 chr15 44084831 44085004 -41610750 + AluSx SINE Alu 1 174 -138 488 232 152 139 chr15 44085115 44085338 -41610416 + L1MC4 LINE L1 5943 6162 -1646 2320 100 7 10 chr15 44085338 44085648 -41610106 + AluSc SINE Alu 1 309 0 488 232 152 139 chr15 44085648 44086439 -41609315 + L1MC4 LINE L1 6162 6927 -881 2495 74 0 3 chr15 44086439 44086748 -41609006 + AluY SINE Alu 1 308 -3 488 232 152 139 chr15 44086748 44086796 -41608958 + L1MC4 LINE L1 6927 6973 -835 1228 184 47 49 chr15 44086817 44087110 -41608644 + L1MD2 LINE L1 6033 7797 -11 711 244 182 40 chr15 44087114 44087285 -41608469 + L1MC4 LINE L1 6274 6009 -350 2404 82 10 0 chr15 44087285 44087591 -41608163 + AluSp SINE Alu 2 310 -3 711 244 182 40 chr15 44087591 44088000 -41607754 + L1MC4 LINE L1 6008 6358 -1 2293 35 38 38 chr15 44088000 44088288 -41607466 - AluY SINE Alu -13 298 11 600 276 87 66 chr15 44088368 44088822 -41606932 + MLT1G3 LTR MaLR 25 555 0 226 276 124 0 chr15 44088906 44089011 -41606743 + L1MC4 LINE L1 7794 7911 -131 698 201 112 12 chr15 44089139 44089308 -41606446 - AluJo SINE Alu -12 300 115 1943 235 48 55 chr15 44089367 44089665 -41606089 - MER68 LTR ERV1 -1 561 267 2513 71 0 0 chr15 44089665 44089959 -41605795 - AluSg SINE Alu -16 294 1 1943 235 48 55 chr15 44089959 44090225 -41605529 - MER68 LTR ERV1 -295 267 1 2230 118 7 0 chr15 44090903 44091208 -41604546 + AluSq SINE Alu 1 307 -6 1247 134 0 0 chr15 44091209 44091381 -41604373 + AluSg/x SINE Alu 126 297 -15 2140 136 7 3 chr15 44091445 44091755 -41603999 + AluSx SINE Alu 1 311 -1 2313 111 3 0 chr15 44091854 44092160 -41603594 + AluSq SINE Alu 1 307 -6 2153 146 0 3 chr15 44092170 44092478 -41603276 + AluSx SINE Alu 1 307 -5 1388 226 3 20 chr15 44092878 44093184 -41602570 - AluJo SINE Alu -8 304 4 729 202 0 0 chr15 44093198 44093322 -41602432 - FLAM_C SINE Alu -18 125 2 207 0 0 0 chr15 44093813 44093836 -41601918 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1580 182 7 27 chr15 44093838 44094134 -41601620 - AluJo SINE Alu -22 290 1 1922 158 7 0 chr15 44094293 44094584 -41601170 + AluJb SINE Alu 1 293 -19 1791 134 65 10 chr15 44094594 44094885 -41600869 + AluSx SINE Alu 1 307 -5 1316 183 5 5 chr15 44095000 44095224 -41600530 + AluJb SINE Alu 77 300 -12 2212 102 0 10 chr15 44095360 44095654 -41600100 + AluSg SINE Alu 1 291 -19 623 98 0 0 chr15 44095928 44096010 -41599744 + L1MB5 LINE L1 6038 6119 -55 1431 183 49 3 chr15 44096010 44096294 -41599460 - AluJo SINE Alu -2 310 14 255 183 33 0 chr15 44096294 44096354 -41599400 + L1MB5 LINE L1 6113 6174 0 1733 156 20 17 chr15 44097287 44097589 -41598165 - AluJb SINE Alu -8 304 2 36 23 0 0 chr15 44097849 44097892 -41597862 + AT_rich Low_complexity Low_complexity 1 43 0 3418 147 27 56 chr15 44098014 44098675 -41597079 + L1MB3 LINE L1 5460 6101 -82 1918 101 97 4 chr15 44098678 44098946 -41596808 + AluSx SINE Alu 1 293 -19 28 29 0 0 chr15 44098948 44098983 -41596771 + AT_rich Low_complexity Low_complexity 1 35 0 334 163 0 81 chr15 44098983 44099069 -41596685 + L1MB3 LINE L1 6096 6174 -9 2416 73 0 10 chr15 44099069 44099371 -41596383 - AluY SINE Alu -12 299 1 2173 119 3 3 chr15 44099805 44100099 -41595655 - AluSx SINE Alu -18 294 1 2893 19 0 0 chr15 44101102 44101415 -41594339 + AluYb8 SINE Alu 1 313 -5 727 242 0 12 chr15 44102186 44102347 -41593407 + FRAM SINE Alu 1 157 -19 1795 146 50 4 chr15 44102352 44102633 -41593121 + AluJb SINE Alu 2 295 -17 241 195 13 13 chr15 44103505 44103582 -41592172 + (TA)n Simple_repeat Simple_repeat 1 77 0 1170 170 24 89 chr15 44103582 44103829 -41591925 - AluJb SINE Alu -24 288 58 1935 123 21 21 chr15 44103829 44104113 -41591641 - AluSx SINE Alu -28 284 1 252 118 78 0 chr15 44104189 44104240 -41591514 + L1MB8 LINE L1 5297 5351 -949 1344 190 17 0 chr15 44104340 44104572 -41591182 + AluJb SINE Alu 47 282 -30 339 102 0 0 chr15 44104573 44104622 -41591132 - AluSg/x SINE Alu -169 131 83 486 0 0 0 chr15 44104638 44104692 -41591062 + (TAAAA)n Simple_repeat Simple_repeat 4 57 0 3091 160 35 32 chr15 44104692 44105098 -41590656 + L1MB8 LINE L1 5557 5967 -211 2196 113 7 3 chr15 44105098 44105391 -41590363 + AluSg SINE Alu 1 294 -16 3091 160 35 32 chr15 44105391 44105604 -41590150 + L1MB8 LINE L1 5967 6178 0 303 188 25 62 chr15 44105624 44105704 -41590050 + LTR9 LTR ERV1 449 525 -87 2438 102 0 0 chr15 44106314 44106627 -41589127 + AluSq SINE Alu 1 313 0 1515 158 65 38 chr15 44106725 44106860 -41588894 + AluSx SINE Alu 2 132 -180 2518 84 0 0 chr15 44106860 44107169 -41588585 + AluSx SINE Alu 1 309 -3 2327 81 44 0 chr15 44107170 44107467 -41588287 + AluSg SINE Alu 1 310 0 1515 158 65 38 chr15 44107467 44107620 -41588134 + AluSx SINE Alu 131 300 -12 2897 82 12 15 chr15 44107629 44108033 -41587721 + L1PB2 LINE L1 5746 6148 -3 2232 128 3 0 chr15 44108199 44108496 -41587258 - AluSq SINE Alu -14 299 2 297 282 13 0 chr15 44109369 44109447 -41586307 - MER112 DNA MER1_type -14 246 168 1337 155 18 5 chr15 44109458 44109677 -41586077 + AluJb SINE Alu 86 307 -5 528 240 58 7 chr15 44109688 44109842 -41585912 - MER112 DNA MER1_type -95 165 4 2260 104 3 3 chr15 44110008 44110307 -41585447 - AluSc SINE Alu -10 299 1 2367 82 0 16 chr15 44110462 44110766 -41584988 - AluY SINE Alu -12 299 1 2186 114 0 3 chr15 44110778 44111067 -41584687 - AluSq SINE Alu -25 288 1 645 250 94 9 chr15 44111453 44111665 -41584089 + MIR SINE MIR 30 259 -3 2248 112 0 10 chr15 44111926 44112231 -41583523 + AluSg SINE Alu 1 302 -8 1379 177 159 17 chr15 44112440 44112791 -41582963 - L1ME2 LINE L1 -68 6096 5696 1902 154 3 10 chr15 44112791 44113083 -41582671 - AluJb SINE Alu -22 290 1 2398 82 7 0 chr15 44113233 44113567 -41582187 - AluSp SINE Alu 0 336 1 733 228 33 58 chr15 44113579 44113820 -41581934 - MER46C DNA MER2_type -80 258 24 714 219 38 22 chr15 44114140 44114323 -41581431 - MIR SINE MIR -26 236 51 446 119 0 83 chr15 44114335 44114419 -41581335 - AluJ/FRAM SINE Alu -15 297 221 1080 162 61 44 chr15 44114452 44114680 -41581074 - AluJo SINE Alu -52 260 29 474 155 287 31 chr15 44114716 44114845 -41580909 + FRAM SINE Alu 5 166 0 266 291 126 71 chr15 44115055 44115470 -41580284 + L2 LINE L2 2606 3054 -218 2073 126 10 0 chr15 44115509 44115802 -41579952 + AluSx SINE Alu 1 296 -16 1982 109 65 7 chr15 44115804 44116097 -41579657 + AluSg SINE Alu 1 310 0 2261 109 0 0 chr15 44116204 44116506 -41579248 - AluY SINE Alu -9 302 1 1355 164 82 0 chr15 44116881 44117113 -41578641 - AluJb SINE Alu -19 293 43 2156 112 3 7 chr15 44117119 44117414 -41578340 - AluSx SINE Alu -18 294 1 1482 184 59 14 chr15 44117489 44117777 -41577977 - AluJb SINE Alu -11 301 1 2279 117 0 0 chr15 44118363 44118661 -41577093 + AluSx SINE Alu 1 298 -14 33 0 0 0 chr15 44118881 44118914 -41576840 + AT_rich Low_complexity Low_complexity 1 33 0 1359 172 11 42 chr15 44119033 44119294 -41576460 + AluJo SINE Alu 39 291 -21 324 0 0 0 chr15 44119294 44119330 -41576424 + (TG)n Simple_repeat Simple_repeat 2 37 0 1894 135 57 14 chr15 44119450 44119746 -41576008 - AluSx SINE Alu -3 309 1 895 73 9 0 chr15 44119934 44120044 -41575710 + AluSq/x SINE Alu 23 133 -180 2172 91 9 41 chr15 44120048 44120181 -41575573 + AluSc SINE Alu 1 137 -172 2338 105 0 0 chr15 44120181 44120485 -41575269 + AluSc SINE Alu 1 304 -5 2172 91 9 41 chr15 44120485 44120669 -41575085 + AluSc SINE Alu 137 308 -1 4655 132 9 3 chr15 44120669 44121358 -41574396 - MER49 LTR ERV1 -33 890 198 1491 118 0 5 chr15 44121391 44121603 -41574151 - MER49 LTR ERV1 -712 211 1 1717 187 21 3 chr15 44122230 44122519 -41573235 - AluJb SINE Alu -18 294 1 184 267 0 116 chr15 44122651 44122737 -41573017 - MIR3 SINE MIR -25 183 108 236 195 0 0 chr15 44122928 44122969 -41572785 + L1ME3 LINE L1 5447 5487 -2555 1638 127 55 82 chr15 44123003 44123334 -41572420 + AluSx SINE Alu 1 323 0 1707 201 21 23 chr15 44123351 44123735 -41572019 + L1ME3 LINE L1 5506 5888 -274 1084 82 8 0 chr15 44123736 44123870 -41571884 + AluSg1 SINE Alu 1 135 -174 2408 94 3 0 chr15 44123871 44124180 -41571574 + AluSg SINE Alu 1 310 0 808 211 65 41 chr15 44124185 44124431 -41571323 + L1ME3 LINE L1 5904 6155 -7 1619 136 61 14 chr15 44124834 44125113 -41570641 - AluJo SINE Alu -20 292 1 801 164 87 77 chr15 44125631 44125700 -41570054 - MER3 DNA MER1_type 0 209 142 2496 56 23 0 chr15 44125700 44126006 -41569748 + AluSp SINE Alu 1 313 0 801 164 87 77 chr15 44126006 44126143 -41569611 - MER3 DNA MER1_type -67 142 1 267 327 77 19 chr15 44126245 44126349 -41569405 + L2 LINE L2 3143 3252 -20 2583 70 0 0 chr15 44127716 44128029 -41567725 - AluSq SINE Alu 0 313 1 2376 75 3 23 chr15 44128507 44128814 -41566940 + AluSp SINE Alu 1 301 -12 2049 210 69 27 chr15 44129294 44129846 -41565908 - MER90 LTR ERV1 0 575 1 2553 52 3 3 chr15 44129933 44130238 -41565516 + AluY SINE Alu 1 305 -6 248 294 66 22 chr15 44130875 44131011 -41564743 + MIR SINE MIR 71 212 -50 690 290 123 18 chr15 44131086 44131634 -41564120 + L1ME3A LINE L1 4795 5284 -894 15782 107 24 28 chr15 44131634 44131862 -41563892 + Tigger1 DNA MER2_type 1 228 -2190 1606 172 41 21 chr15 44131862 44132153 -41563601 - AluJo SINE Alu -15 297 1 15782 107 24 28 chr15 44132153 44132174 -41563580 + Tigger1 DNA MER2_type 228 248 -2170 1701 161 70 0 chr15 44132174 44132460 -41563294 - AluJb SINE Alu -6 306 1 15782 107 24 28 chr15 44132460 44132641 -41563113 + Tigger1 DNA MER2_type 248 428 -1990 1937 118 45 7 chr15 44132641 44132930 -41562824 + AluSx SINE Alu 1 300 -12 15782 107 24 28 chr15 44132930 44133671 -41562083 + Tigger1 DNA MER2_type 428 1171 -1247 2333 95 0 7 chr15 44133671 44133975 -41561779 + AluSx SINE Alu 1 302 -10 15782 107 24 28 chr15 44133975 44134121 -41561633 + Tigger1 DNA MER2_type 1171 1316 -1102 411 21 0 0 chr15 44134121 44134169 -41561585 + (TA)n Simple_repeat Simple_repeat 2 49 0 15782 107 24 28 chr15 44134169 44135275 -41560479 + Tigger1 DNA MER2_type 1316 2418 0 690 290 123 18 chr15 44135275 44135373 -41560381 + L1ME3A LINE L1 5284 5370 -808 2286 110 0 3 chr15 44135373 44135683 -41560071 - AluSx SINE Alu -3 309 1 690 290 123 18 chr15 44135683 44136051 -41559703 + L1ME3A LINE L1 5370 5934 -244 1659 286 113 21 chr15 44136406 44137371 -41558383 - L2 LINE L2 -22 3291 2243 488 211 48 60 chr15 44137373 44137539 -41558215 - HsTC2 DNA Tc2 -2 1896 1733 1267 215 52 21 chr15 44137539 44137914 -41557840 - MER90 LTR ERV1 0 614 118 593 176 131 17 chr15 44137928 44138104 -41557650 + L1MC4a LINE L1 5754 5949 -1859 2433 87 0 10 chr15 44138111 44138423 -41557331 + AluSc SINE Alu 1 309 0 235 241 326 30 chr15 44138758 44138994 -41556760 + L1MC4a LINE L1 6413 6718 -1090 2545 60 0 0 chr15 44139500 44139802 -41555952 - AluY SINE Alu -8 303 2 617 297 71 4 chr15 44140029 44140268 -41555486 + MIR SINE MIR 8 262 0 1938 149 7 7 chr15 44140514 44140815 -41554939 - AluSx SINE Alu -11 301 1 1633 180 14 17 chr15 44141008 44141302 -41554452 + AluJo SINE Alu 2 294 -18 2367 81 0 0 chr15 44141380 44141675 -41554079 + AluY SINE Alu 1 295 -16 2200 121 3 0 chr15 44141975 44142272 -41553482 + AluSx SINE Alu 1 298 -14 2099 101 14 0 chr15 44142357 44142645 -41553109 + AluSq SINE Alu 1 292 -21 21 0 0 0 chr15 44142647 44142668 -41553086 + AT_rich Low_complexity Low_complexity 1 21 0 774 156 7 59 chr15 44142774 44142909 -41552845 + FLAM_C SINE Alu 2 129 -14 208 188 29 0 chr15 44142909 44142978 -41552776 + (TA)n Simple_repeat Simple_repeat 2 72 0 226 143 36 18 chr15 44143003 44143059 -41552695 + (TA)n Simple_repeat Simple_repeat 2 58 0 814 183 15 0 chr15 44143849 44143980 -41551774 + FLAM_A SINE Alu 1 133 0 2246 112 0 7 chr15 44144262 44144558 -41551196 + AluSx SINE Alu 1 294 -18 2314 89 3 0 chr15 44144877 44145170 -41550584 + AluSp SINE Alu 1 294 -19 1921 171 0 3 chr15 44146045 44146350 -41549404 + AluJb SINE Alu 1 304 -8 1554 161 62 11 chr15 44146350 44146624 -41549130 + AluJb SINE Alu 1 288 -24 32 0 0 0 chr15 44146624 44146656 -41549098 + AT_rich Low_complexity Low_complexity 1 32 0 1383 263 54 30 chr15 44146752 44146845 -41548909 + L1MC/D LINE L1 5270 5359 -2449 2205 123 0 0 chr15 44146845 44147145 -41548609 - AluSx SINE Alu -12 300 1 1383 263 54 30 chr15 44147145 44147592 -41548162 + L1MC/D LINE L1 5359 5823 -1985 414 189 0 27 chr15 44147595 44147669 -41548085 + AluJb SINE Alu 85 156 -156 270 253 0 25 chr15 44147670 44147749 -41548005 + L1MC/D LINE L1 5747 5823 -1985 1202 123 75 57 chr15 44147753 44147965 -41547789 + AluJb SINE Alu 86 301 -11 281 159 16 0 chr15 44148008 44148071 -41547683 + (CA)n Simple_repeat Simple_repeat 1 64 0 2316 89 3 0 chr15 44149525 44149817 -41545937 - AluY SINE Alu -17 294 2 2219 97 0 10 chr15 44150818 44151116 -41544638 - AluSg SINE Alu -15 295 1 925 165 103 26 chr15 44151311 44151505 -41544249 - AluJo SINE Alu -19 293 85 21 0 0 0 chr15 44152446 44152467 -41543287 + AT_rich Low_complexity Low_complexity 1 21 0 352 278 96 9 chr15 44153342 44153457 -41542297 + MIR3 SINE MIR 15 139 -69 332 304 39 10 chr15 44154405 44154507 -41541247 + MIR SINE MIR 47 151 -111 2186 86 7 13 chr15 44154537 44154839 -41540915 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr15 44155220 44155241 -41540513 + (A)n Simple_repeat Simple_repeat 1 21 0 183 42 0 0 chr15 44155319 44155343 -41540411 + (CA)n Simple_repeat Simple_repeat 1 24 0 552 306 0 8 chr15 44155366 44155500 -41540254 - L2 LINE L2 -1 3312 3180 2417 79 0 16 chr15 44155633 44155949 -41539805 - AluY SINE Alu 0 311 1 1459 213 109 11 chr15 44155992 44156338 -41539416 + REP3 LTR ERV 1 382 -180 572 200 11 0 chr15 44156338 44156433 -41539321 + MER2 DNA MER2_type 1 96 -249 1764 167 25 0 chr15 44156618 44156900 -41538854 - AluJb SINE Alu -23 289 1 625 155 0 122 chr15 44156912 44157060 -41538694 - FLAM_A SINE Alu -3 130 1 2118 114 0 48 chr15 44157340 44157656 -41538098 + AluSg SINE Alu 1 301 -9 410 275 31 88 chr15 44157818 44158011 -41537743 + L1MEd LINE L1 447 628 -5491 * 488 221 37 22 chr15 44158005 44158141 -41537613 + L1MEd LINE L1 2307 2444 -3685 2037 112 49 0 chr15 44158141 44158427 -41537327 + AluSq SINE Alu 1 300 -13 554 211 78 33 chr15 44158444 44158624 -41537130 + L1MEd LINE L1 3368 3555 -2574 732 191 23 35 chr15 44158636 44158809 -41536945 - MLT1F LTR MaLR -2 540 370 315 278 156 11 chr15 44159988 44160078 -41535676 + MIR SINE MIR 19 121 -87 23 0 0 0 chr15 44160327 44160350 -41535404 + AT_rich Low_complexity Low_complexity 1 23 0 2208 104 0 0 chr15 44160368 44160668 -41535086 - AluSx SINE Alu 0 303 4 221 0 0 33 chr15 44160669 44160699 -41535055 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 45 37 0 25 chr15 44160699 44160733 -41535021 + AT_rich Low_complexity Low_complexity 1 34 -45 3582 13 0 0 chr15 44160733 44161116 -41534638 - L1PA2 LINE L1 -6 6149 5767 995 37 0 0 chr15 44161116 44161223 -41534531 - U6 snRNA snRNA 0 107 1 45 37 0 25 chr15 44161223 44161268 -41534486 + AT_rich Low_complexity Low_complexity 32 79 0 281 151 19 0 chr15 44161361 44161414 -41534340 + MIR3 SINE MIR 155 208 0 239 200 0 0 chr15 44162491 44162531 -41533223 + U2 snRNA snRNA 4 43 -145 2460 72 0 0 chr15 44162531 44162823 -41532931 + AluY SINE Alu 2 293 -18 576 262 71 18 chr15 44163156 44163324 -41532430 + MIR3 SINE MIR 30 206 -2 3565 118 21 29 chr15 44164115 44164638 -41531116 - MER1A DNA MER1_type -10 519 1 2608 153 123 162 chr15 44165068 44165243 -41530511 - L1MC3 LINE L1 -324 7461 7281 2326 78 14 0 chr15 44165243 44165537 -41530217 + AluY SINE Alu 1 298 -13 2608 153 123 162 chr15 44165537 44165646 -41530108 - L1MC3 LINE L1 -504 7281 7169 320 253 0 42 chr15 44165646 44165741 -41530013 - MLT1F1 LTR MaLR -453 114 24 2608 153 123 162 chr15 44165741 44166317 -41529437 - L1MC3 LINE L1 -616 7169 6543 194 303 49 49 chr15 44167318 44167440 -41528314 - L2 LINE L2 -8 3305 3184 853 191 0 0 chr15 44168093 44168224 -41527530 - FLAM_A SINE Alu -2 131 1 1580 178 13 26 chr15 44168564 44168868 -41526886 + AluJo SINE Alu 1 300 -12 327 231 130 37 chr15 44168998 44169106 -41526648 + L2 LINE L2 3151 3268 -4 2377 93 3 0 chr15 44169233 44169535 -41526219 + AluSx SINE Alu 1 303 -9 4566 161 63 46 chr15 44169648 44170536 -41525218 - MER21A LTR ERV1 -28 903 1 198 347 33 25 chr15 44171092 44171213 -41524541 - MIR SINE MIR -91 171 50 825 247 0 13 chr15 44171572 44171726 -41524028 + AluJb SINE Alu 138 289 -23 2361 91 0 3 chr15 44171737 44172035 -41523719 + AluSc SINE Alu 1 297 -12 2744 94 3 22 chr15 44172454 44172816 -41522938 - THE1A LTR MaLR 0 355 1 12096 86 27 14 chr15 44172816 44174375 -41521379 - THE1A-int LTR MaLR 0 1580 1 2571 114 6 25 chr15 44174375 44174736 -41521018 - THE1A LTR MaLR 0 355 2 297 217 28 66 chr15 44175042 44175089 -41520665 + L1MEd LINE L1 908 955 -5164 1732 173 13 3 chr15 44175089 44175390 -41520364 + AluJo SINE Alu 1 304 -8 297 217 28 66 chr15 44175390 44175448 -41520306 + L1MEd LINE L1 955 1009 -5110 268 296 43 0 chr15 44175481 44175596 -41520158 + L1M4 LINE L1 4497 4616 -1530 2591 152 29 33 chr15 44175642 44175971 -41519783 + L1MB3 LINE L1 5690 6018 -165 2231 97 17 0 chr15 44175971 44176269 -41519485 - AluSx SINE Alu -8 304 2 2591 152 29 33 chr15 44176269 44176419 -41519335 + L1MB3 LINE L1 6018 6167 -16 1192 114 18 0 chr15 44176419 44176586 -41519168 - AluSq SINE Alu -22 291 122 675 274 91 71 chr15 44176694 44177157 -41518597 + MLT1H LTR MaLR 71 542 -7 1612 267 95 32 chr15 44177945 44178742 -41517012 - L1ME LINE L1 -4934 1327 389 22 56 0 0 chr15 44178878 44178914 -41516840 + AT_rich Low_complexity Low_complexity 1 36 0 1359 184 83 18 chr15 44179758 44180035 -41515719 - AluJo SINE Alu -17 295 1 321 365 47 7 chr15 44180083 44180231 -41515523 + MIR SINE MIR 86 239 -23 527 143 12 0 chr15 44180462 44180546 -41515208 + Tigger4(Zombi) DNA MER2_type 2647 2731 0 288 288 0 0 chr15 44181631 44181704 -41514050 - MIR SINE MIR -99 163 91 1634 153 21 25 chr15 44182369 44182651 -41513103 + AluJo SINE Alu 1 281 -31 275 0 29 0 chr15 44182655 44182690 -41513064 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1896 145 24 0 chr15 44182690 44182980 -41512774 + AluJb SINE Alu 1 297 -15 559 175 9 77 chr15 44183009 44183172 -41512582 + L1ME2 LINE L1 6047 6138 -26 2197 97 3 0 chr15 44183694 44183983 -41511771 - AluSg SINE Alu -20 290 1 227 56 0 0 chr15 44184088 44184124 -41511630 + AluJo SINE Alu 267 302 0 781 275 72 0 chr15 44184913 44185149 -41510605 - MIR SINE MIR 0 262 10 23 68 0 0 chr15 44185273 44185317 -41510437 + AT_rich Low_complexity Low_complexity 1 44 0 2617 27 7 0 chr15 44185348 44185647 -41510107 + AluY SINE Alu 1 301 -10 965 103 0 5 chr15 44185811 44185947 -41509807 - FLAM_C SINE Alu -15 118 1 254 250 0 50 chr15 44185948 44186008 -41509746 - L2 LINE L2 -13 3259 3203 21 0 0 0 chr15 44186099 44186120 -41509634 + AT_rich Low_complexity Low_complexity 1 21 0 801 273 113 11 chr15 44187175 44187486 -41508268 + Tigger8 DNA MER2_type 126 481 -185 1989 108 64 27 chr15 44187486 44187782 -41507972 + AluSx SINE Alu 1 307 -5 801 273 113 11 chr15 44187782 44187833 -41507921 + Tigger8 DNA MER2_type 481 525 -141 1650 65 0 99 chr15 44188285 44188547 -41507207 - AluSg SINE Alu -11 299 64 813 53 0 0 chr15 44188550 44188645 -41507109 - AluSg1 SINE Alu -214 95 1 339 282 10 10 chr15 44188846 44188949 -41506805 + L2 LINE L2 3190 3292 -21 302 231 58 109 chr15 44189514 44189559 -41506195 + L1ME3A LINE L1 5815 5861 -309 2633 52 0 3 chr15 44189559 44189868 -41505886 + AluY SINE Alu 1 308 -3 302 231 58 109 chr15 44189868 44189978 -41505776 + L1ME3A LINE L1 5861 5962 -208 1852 153 14 7 chr15 44190021 44190315 -41505439 + AluJo SINE Alu 1 296 -16 447 222 30 0 chr15 44191568 44191667 -41504087 - U13 snRNA snRNA -2 102 1 2328 114 0 0 chr15 44193228 44193536 -41502218 + AluSg SINE Alu 1 308 -2 2268 125 0 0 chr15 44193919 44194215 -41501539 + AluSx SINE Alu 1 296 -16 1889 178 189 11 chr15 44194659 44195119 -41500635 - MLT1F LTR MaLR 0 542 1 2303 114 0 0 chr15 44195775 44196081 -41499673 - AluSx SINE Alu -6 306 1 2238 110 0 0 chr15 44196315 44196606 -41499148 + AluSx SINE Alu 1 291 -21 937 292 189 17 chr15 44197106 44197329 -41498425 - L2 LINE L2 -224 3048 2865 559 70 0 70 chr15 44197329 44197415 -41498339 + MADE1 DNA Mariner 1 80 0 937 292 189 17 chr15 44197415 44197456 -41498298 - L2 LINE L2 -407 2865 2832 2398 93 0 0 chr15 44197456 44197756 -41497998 - AluSc SINE Alu -9 300 1 937 292 189 17 chr15 44197756 44198224 -41497530 - L2 LINE L2 -440 2832 2188 375 241 103 0 chr15 44198274 44198390 -41497364 - L2 LINE L2 -3 3269 3142 672 199 135 26 chr15 44198392 44198548 -41497206 - MER69A DNA AcHobo -2 175 3 262 294 76 76 chr15 44198548 44198786 -41496968 - L2 LINE L2 -121 3151 2914 1331 179 45 39 chr15 44198794 44199004 -41496750 + MER33 DNA MER1_type 15 229 -2356 2250 115 0 0 chr15 44199004 44199300 -41496454 + AluSx SINE Alu 1 296 -16 1331 179 45 39 chr15 44199300 44199397 -41496357 + MER33 DNA MER1_type 229 324 0 261 83 0 0 chr15 44200367 44200403 -41495351 + (A)n Simple_repeat Simple_repeat 1 36 0 203 194 0 0 chr15 44200429 44200465 -41495289 + A-rich Low_complexity Low_complexity 1 36 0 298 277 52 58 chr15 44200468 44200623 -41495131 + MIR SINE MIR 63 216 -46 1591 96 14 0 chr15 44200830 44201039 -41494715 + AluSc SINE Alu 1 212 -97 422 62 0 0 chr15 44201039 44201103 -41494651 + AluSc SINE Alu 246 309 0 193 298 0 75 chr15 44201510 44201604 -41494150 + L2 LINE L2 3186 3272 0 693 191 7 14 chr15 44201801 44201942 -41493812 + AluJo SINE Alu 2 141 -171 1834 152 11 0 chr15 44201945 44202215 -41493539 + AluJb SINE Alu 16 288 -24 2025 98 0 0 chr15 44202221 44202476 -41493278 + AluSq SINE Alu 1 255 -58 330 26 0 0 chr15 44202488 44202527 -41493227 + (TAA)n Simple_repeat Simple_repeat 2 40 0 363 312 187 23 chr15 44203187 44203540 -41492214 - L2 LINE L2 0 3272 2862 1451 102 5 5 chr15 44204266 44204463 -41491291 + AluSq SINE Alu 1 197 -116 216 0 0 0 chr15 44206080 44206104 -41489650 + (TG)n Simple_repeat Simple_repeat 1 24 0 1693 176 14 11 chr15 44206106 44206385 -41489369 - AluJo SINE Alu -32 280 1 1411 220 43 43 chr15 44206690 44207154 -41488600 - L1MC5 LINE L1 -37 7924 7461 1569 151 13 0 chr15 44207561 44207793 -41487961 + AluJo SINE Alu 29 263 -49 243 0 0 0 chr15 44207807 44207834 -41487920 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2057 128 7 0 chr15 44208000 44208288 -41487466 + AluSx SINE Alu 1 290 -22 10959 51 6 6 chr15 44208331 44210478 -41485276 - L1PA6 LINE L1 -4 6150 4005 811 159 0 0 chr15 44210479 44210605 -41485149 - FLAM_C SINE Alu -6 127 2 197 132 26 0 chr15 44210815 44210853 -41484901 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 492 188 174 65 chr15 44210868 44211087 -41484667 - L1MC4a LINE L1 -178 5943 5703 427 258 48 16 chr15 44211090 44211214 -41484540 - L2 LINE L2 -508 2806 2679 21 36 0 0 chr15 44212140 44212168 -41483586 + AT_rich Low_complexity Low_complexity 1 28 0 56 29 0 0 chr15 44212650 44212720 -41483034 + AT_rich Low_complexity Low_complexity 1 70 0 438 270 0 68 chr15 44212726 44212874 -41482880 - L2 LINE L2 -18 3295 3158 511 204 59 40 chr15 44212970 44213122 -41482632 - MIR SINE MIR -33 229 75 235 320 13 0 chr15 44213192 44213270 -41482484 + L3b LINE CR1 1310 1388 -195 399 261 94 7 chr15 44215002 44215140 -41480614 + MIR3 SINE MIR 35 184 -24 2237 125 0 3 chr15 44215339 44215643 -41480111 - AluSx SINE Alu -9 303 1 30 45 0 0 chr15 44215694 44215738 -41480016 + AT_rich Low_complexity Low_complexity 1 44 0 312 267 160 0 chr15 44215866 44215997 -41479757 - MIR SINE MIR -108 154 3 654 304 20 5 chr15 44218759 44218963 -41476791 - MIR SINE MIR -9 253 47 272 182 0 0 chr15 44219465 44219509 -41476245 - FRAM/FAM SINE Alu -127 39 1 492 237 147 19 chr15 44219822 44219978 -41475776 + MIR3 SINE MIR 23 198 -10 354 287 21 9 chr15 44220076 44220191 -41475563 - MIR SINE MIR -88 120 3 1857 145 10 14 chr15 44220628 44220918 -41474836 - AluJo SINE Alu -23 289 1 362 184 132 18 chr15 44221198 44221312 -41474442 - MIR SINE MIR -58 204 78 196 358 0 0 chr15 44221337 44221404 -41474350 + MIR SINE MIR 37 103 -105 852 194 0 0 chr15 44221602 44221746 -41474008 - MER58B DNA MER1_type -1 340 197 1262 174 3 96 chr15 44222626 44222908 -41472846 - AluJb SINE Alu -14 298 43 2197 126 0 3 chr15 44223064 44223365 -41472389 + AluSx SINE Alu 1 300 -12 1773 154 7 4 chr15 44224407 44224680 -41471074 + AluJb SINE Alu 12 285 -27 279 54 0 0 chr15 44224691 44224728 -41471026 + (CA)n Simple_repeat Simple_repeat 1 37 0 297 243 14 0 chr15 44227444 44227518 -41468236 + MIR SINE MIR 78 152 -110 2147 106 43 13 chr15 44228228 44228351 -41467403 + AluSx SINE Alu 1 119 -193 2495 76 0 0 chr15 44228351 44228652 -41467102 + AluSx SINE Alu 1 301 -11 2147 106 43 13 chr15 44228652 44228831 -41466923 + AluSx SINE Alu 119 312 0 4490 160 54 30 chr15 44229510 44229732 -41466022 + L1MB5 LINE L1 4820 5035 -1139 572 203 119 0 chr15 44229732 44229850 -41465904 + FLAM_A SINE Alu 1 132 -1 4490 160 54 30 chr15 44229850 44230945 -41464809 + L1MB5 LINE L1 5035 6161 -13 26 0 0 0 chr15 44230988 44231014 -41464740 + AT_rich Low_complexity Low_complexity 1 26 0 210 171 0 0 chr15 44232430 44232471 -41463283 + (TA)n Simple_repeat Simple_repeat 1 41 0 994 152 136 0 chr15 44232494 44232678 -41463076 + MER3 DNA MER1_type 1 209 0 185 279 0 33 chr15 44233339 44233400 -41462354 - L2 LINE L2 0 3313 3255 435 223 117 4 chr15 44233445 44233609 -41462145 - MIR SINE MIR -3 259 73 2160 211 198 66 chr15 44233909 44234952 -41460802 + HAL1 LINE L1 1068 1972 -535 1804 167 24 7 chr15 44234952 44235246 -41460508 + AluJb SINE Alu 1 299 -13 2160 211 198 66 chr15 44235246 44235259 -41460495 + HAL1 LINE L1 1972 1982 -525 2069 131 0 3 chr15 44235259 44235577 -41460177 + AluSx SINE Alu 1 317 0 2160 211 198 66 chr15 44235577 44235636 -41460118 + HAL1 LINE L1 1982 2032 -475 2134 124 0 16 chr15 44235636 44235942 -41459812 + AluSx SINE Alu 1 301 -11 2160 211 198 66 chr15 44235942 44236026 -41459728 + HAL1 LINE L1 2032 2431 -76 186 129 0 0 chr15 44236056 44236087 -41459667 - MIR SINE MIR -85 177 147 266 316 11 11 chr15 44236117 44236212 -41459542 + MIR SINE MIR 168 262 0 240 88 29 0 chr15 44236419 44236453 -41459301 - MER58 DNA MER1_type 0 2420 2386 1741 159 0 0 chr15 44236453 44236711 -41459043 - AluJb SINE Alu -54 258 1 1520 126 25 35 chr15 44236712 44236997 -41458757 - L1MA5 LINE L1 -119 6181 5900 590 299 157 20 chr15 44237039 44237441 -41458313 + L2 LINE L2 2172 2628 -686 200 340 77 61 chr15 44237690 44237987 -41457767 + L2 LINE L2 2861 3162 -110 251 281 134 61 chr15 44238067 44238529 -41457225 - L2 LINE L2 -840 2474 1979 1106 203 25 13 chr15 44239559 44239796 -41455958 + MIR SINE MIR 6 245 -17 362 255 157 0 chr15 44239818 44239920 -41455834 - MIR3 SINE MIR -49 159 42 1667 164 20 33 chr15 44240039 44240343 -41455411 + AluJb SINE Alu 1 300 -12 1513 132 45 30 chr15 44240835 44241101 -41454653 + L1MB8 LINE L1 5900 6169 -9 2368 84 0 31 chr15 44241469 44241789 -41453965 - AluY SINE Alu -1 310 1 272 128 21 21 chr15 44242374 44242421 -41453333 - L2 LINE L2 -3 3310 3264 316 303 110 7 chr15 44243487 44243642 -41452112 - L1ME4a LINE L1 -40 6081 5911 2276 88 24 0 chr15 44243657 44243951 -41451803 - AluSp SINE Alu -12 301 1 367 328 8 17 chr15 44244388 44244507 -41451247 - L2 LINE L2 0 3313 3196 239 224 0 20 chr15 44245407 44245456 -41450298 + polypurine Low_complexity Low_complexity 3 50 0 312 369 19 0 chr15 44245656 44245813 -41449941 + MIR SINE MIR 40 199 -63 1964 123 3 11 chr15 44247383 44247689 -41448065 + AluSx SINE Alu 1 304 0 2014 91 57 0 chr15 44247699 44248004 -41447750 + AluSc SINE Alu 1 320 0 257 208 0 0 chr15 44249533 44249581 -41446173 + MIR3 SINE MIR 151 198 -10 783 198 124 37 chr15 44249675 44249892 -41445862 - MIR SINE MIR -4 258 23 189 261 0 0 chr15 44250214 44250260 -41445494 + MIR SINE MIR 189 234 -28 424 299 120 0 chr15 44250562 44250729 -41445025 - MER117 DNA MER1_type 0 197 11 388 181 53 21 chr15 44250739 44250833 -41444921 - MIR3 SINE MIR -52 156 60 350 268 102 40 chr15 44251655 44251806 -41443948 - MIR SINE MIR -56 152 32 1115 76 0 0 chr15 44252851 44252983 -41442771 - AluSc SINE Alu -177 132 1 212 301 101 92 chr15 44252993 44253339 -41442415 + L2 LINE L2 2918 3266 -6 2374 92 7 0 chr15 44253802 44254106 -41441648 + AluSx SINE Alu 1 306 -6 283 232 152 29 chr15 44254414 44254552 -41441202 + L1MC5 LINE L1 7340 7494 -467 302 218 118 65 chr15 44254926 44255188 -41440566 + L1MC5 LINE L1 7452 7727 -234 * 641 205 100 16 chr15 44255171 44255361 -41440393 + L1ME3A LINE L1 5891 6096 -74 1717 134 108 0 chr15 44255384 44255653 -41440101 + AluJb SINE Alu 1 298 -14 732 202 42 71 chr15 44255695 44255933 -41439821 + L1MC5 LINE L1 7694 7924 -37 707 193 80 0 chr15 44256052 44256202 -41439552 + MER58C DNA MER1_type 52 213 -2 845 228 145 42 chr15 44256303 44257045 -41438709 + L1MC4a LINE L1 5111 5419 -909 234 105 0 0 chr15 44257045 44257083 -41438671 + (TA)n Simple_repeat Simple_repeat 2 39 0 845 228 145 42 chr15 44257083 44257270 -41438484 + L1MC4a LINE L1 5419 5585 -743 668 136 34 17 chr15 44257881 44257999 -41437755 + AluSg/x SINE Alu 185 304 -8 708 177 51 63 chr15 44258347 44258478 -41437276 + MER5B DNA MER1_type 5 135 -43 2423 68 0 0 chr15 44258478 44258774 -41436980 + AluY SINE Alu 1 296 -15 708 177 51 63 chr15 44258774 44258817 -41436937 + MER5B DNA MER1_type 135 177 -1 2066 106 0 62 chr15 44258979 44259300 -41436454 - AluSg SINE Alu -9 301 1 629 151 9 38 chr15 44259311 44259417 -41436337 - FLAM_A SINE Alu -20 122 20 431 209 74 117 chr15 44259474 44259606 -41436148 - MER5A DNA MER1_type 0 189 56 2201 110 14 0 chr15 44259606 44259898 -41435856 - AluSg SINE Alu -14 296 1 431 209 74 117 chr15 44259898 44259949 -41435805 - MER5A DNA MER1_type -133 56 4 469 299 28 56 chr15 44260005 44260219 -41435535 + MIR SINE MIR 42 249 -13 826 320 259 10 chr15 44260256 44260746 -41435008 + L3 LINE CR1 901 1512 -65 344 299 0 20 chr15 44260942 44261089 -41434665 + GA-rich Low_complexity Low_complexity 1 144 0 639 103 0 0 chr15 44261227 44261324 -41434430 + (GGA)n Simple_repeat Simple_repeat 2 98 0 251 321 136 62 chr15 44262623 44262785 -41432969 + L2 LINE L2 3074 3247 -25 437 306 34 7 chr15 44264077 44264224 -41431530 + MIR SINE MIR 19 169 -93 981 82 5 144 chr15 44265203 44265397 -41430357 - AluSp SINE Alu -10 303 137 21 0 0 0 chr15 44265483 44265504 -41430250 + AT_rich Low_complexity Low_complexity 1 21 0 640 268 47 30 chr15 44265717 44265952 -41429802 - MARNA DNA Mariner -262 324 86 1962 146 3 19 chr15 44267362 44267671 -41428083 - AluJb SINE Alu -8 304 1 2430 50 7 10 chr15 44267860 44268162 -41427592 + AluY SINE Alu 1 301 -10 1223 141 50 0 chr15 44269021 44269219 -41426535 - MER46A DNA MER2_type -1 235 28 2005 138 0 28 chr15 44269823 44270143 -41425611 - AluJo SINE Alu -1 311 1 29 0 0 0 chr15 44271867 44271896 -41423858 + AT_rich Low_complexity Low_complexity 1 29 0 252 143 0 0 chr15 44273657 44273699 -41422055 + (TA)n Simple_repeat Simple_repeat 1 42 0 2257 100 3 10 chr15 44273699 44274009 -41421745 - AluSq SINE Alu -5 308 1 254 260 30 30 chr15 44274031 44274131 -41421623 - L1M4 LINE L1 -1299 4847 4748 1763 176 0 7 chr15 44274156 44274452 -41421302 - AluJb SINE Alu -18 294 1 1163 184 0 5 chr15 44274511 44274717 -41421037 - L1MB7 LINE L1 -19 6165 5961 25 65 0 0 chr15 44276003 44276049 -41419705 + AT_rich Low_complexity Low_complexity 1 46 0 3210 148 60 2 chr15 44276582 44277102 -41418652 - MER44D DNA MER2_type 0 605 1 976 192 0 0 chr15 44277133 44277300 -41418454 + FRAM SINE Alu 1 167 -9 2286 107 0 0 chr15 44277550 44277849 -41417905 + AluSc SINE Alu 1 299 -10 1712 145 0 0 chr15 44278711 44278966 -41416788 - AluJo SINE Alu -14 298 44 2010 120 0 0 chr15 44279066 44279333 -41416421 + AluSx SINE Alu 32 298 -14 227 283 142 8 chr15 44279468 44279588 -41416166 - L2 LINE L2 0 3272 3137 340 245 57 9 chr15 44281022 44281128 -41414626 + MER5C DNA MER1_type 14 124 -200 341 163 10 82 chr15 44281156 44281254 -41414500 + MER5C DNA MER1_type 234 324 0 2282 104 0 0 chr15 44281888 44282186 -41413568 - AluSx SINE Alu -14 298 1 1430 176 81 35 chr15 44282839 44283123 -41412631 + AluJo SINE Alu 1 297 -15 2109 91 11 7 chr15 44283366 44283651 -41412103 - AluSc SINE Alu -17 292 7 1862 149 10 0 chr15 44283866 44284154 -41411600 - AluSx SINE Alu -21 291 1 269 264 109 51 chr15 44284259 44284535 -41411219 - L1P LINE L1 -1120 5026 4735 2268 97 10 0 chr15 44284573 44284873 -41410881 - AluSq SINE Alu -10 303 1 1926 149 10 3 chr15 44285344 44285633 -41410121 - AluJb SINE Alu -19 293 3 313 295 52 91 chr15 44285637 44285743 -41410011 - L1ME LINE L1 -1975 4565 4469 2176 99 0 23 chr15 44285743 44286046 -41409708 - AluY SINE Alu -15 296 1 313 295 52 91 chr15 44286046 44286149 -41409605 - L1ME LINE L1 -2071 4469 4364 1409 160 9 0 chr15 44286187 44286400 -41409354 - AluJb SINE Alu -23 289 75 316 294 57 73 chr15 44286926 44287103 -41408651 - HAL1 LINE L1 -2333 174 1 2441 135 71 9 chr15 44287331 44287752 -41408002 - Tigger1 DNA MER2_type 0 2418 1972 * 11083 118 32 32 chr15 44287725 44288217 -41407537 - Tigger1 DNA MER2_type -586 1832 1341 1665 176 34 7 chr15 44288217 44288512 -41407242 - AluSx SINE Alu -8 304 2 11083 118 32 32 chr15 44288512 44289850 -41405904 - Tigger1 DNA MER2_type -1076 1342 2 24 0 0 0 chr15 44289859 44289883 -41405871 + AT_rich Low_complexity Low_complexity 1 24 0 1323 213 108 2 chr15 44289897 44290361 -41405393 - L1ME LINE L1 -2853 3687 3175 3478 199 55 21 chr15 44290372 44291464 -41404290 - L1MB8 LINE L1 -9 6169 5115 2209 110 0 7 chr15 44291464 44291772 -41403982 - AluSq SINE Alu -7 306 1 2261 79 0 7 chr15 44291777 44292069 -41403685 - AluY SINE Alu -17 294 5 3478 199 55 21 chr15 44292069 44292143 -41403611 - L1MB8 LINE L1 -1066 5112 4966 830 127 0 3 chr15 44292189 44292380 -41403374 + MER2 DNA MER2_type 96 345 0 1949 220 20 18 chr15 44292382 44292877 -41402877 - L1MB8 LINE L1 -1202 4944 4449 722 274 115 0 chr15 44292870 44293210 -41402544 - L1ME LINE L1 -3357 3183 2805 * 645 172 0 43 chr15 44293220 44293336 -41402418 - FLAM_A SINE Alu -20 122 12 1454 175 11 57 chr15 44293368 44293648 -41402106 - AluJo SINE Alu -45 267 1 1407 258 118 57 chr15 44293652 44295352 -41400402 - L1ME LINE L1 -4102 2619 799 382 248 147 7 chr15 44295421 44295604 -41400150 - L1ME LINE L1 -5915 615 57 515 237 156 0 chr15 44295611 44295797 -41399957 - L1MCc LINE L1 -4624 2317 2103 330 247 87 32 chr15 44295779 44296063 -41399691 - L1MCc LINE L1 -4892 1531 1279 * 250 294 0 0 chr15 44298251 44298302 -41397452 - L2 LINE L2 -12 3260 3210 347 335 40 33 chr15 44298328 44298479 -41397275 - MIR SINE MIR -54 154 2 27 73 0 0 chr15 44298480 44298535 -41397219 + AT_rich Low_complexity Low_complexity 1 55 0 817 157 0 50 chr15 44298608 44298748 -41397006 - FLAM_C SINE Alu 0 133 1 714 186 129 36 chr15 44299544 44299738 -41396016 + MER58C DNA MER1_type 1 212 -3 458 295 94 90 chr15 44300151 44300585 -41395169 + L2 LINE L2 2874 3309 -4 27 49 0 0 chr15 44300627 44300668 -41395086 + AT_rich Low_complexity Low_complexity 1 41 0 2188 120 0 0 chr15 44300817 44301109 -41394645 + AluSx SINE Alu 6 297 -15 22 0 0 0 chr15 44301569 44301591 -41394163 + AT_rich Low_complexity Low_complexity 1 22 0 1565 186 24 26 chr15 44301837 44302176 -41393578 - MER58B DNA MER1_type -3 338 1 217 295 74 74 chr15 44302399 44302521 -41393233 + MIR SINE MIR 30 151 -111 26 0 0 0 chr15 44302547 44302573 -41393181 + AT_rich Low_complexity Low_complexity 1 26 0 632 117 19 19 chr15 44303479 44303582 -41392172 - U13 snRNA snRNA -1 103 1 23 0 0 0 chr15 44304501 44304524 -41391230 + AT_rich Low_complexity Low_complexity 1 23 0 1766 151 0 56 chr15 44304615 44304920 -41390834 + AluJo SINE Alu 1 288 -24 2244 122 0 3 chr15 44305372 44305683 -41390071 - AluSx SINE Alu -2 310 1 399 174 43 12 chr15 44306170 44306331 -41389423 + (TA)n Simple_repeat Simple_repeat 1 166 0 1973 145 7 0 chr15 44306333 44306623 -41389131 - AluJb SINE Alu -20 292 1 713 176 28 66 chr15 44306650 44306832 -41388922 - L1MD3 LINE L1 -9 7986 7812 30 77 0 0 chr15 44307019 44307084 -41388670 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr15 44307851 44307884 -41387870 + AT_rich Low_complexity Low_complexity 1 33 0 1981 131 3 33 chr15 44307930 44308235 -41387519 + AluJb SINE Alu 1 296 -16 1606 198 3 22 chr15 44308626 44308940 -41386814 + AluJo SINE Alu 1 308 -4 842 220 0 7 chr15 44310330 44310480 -41385274 + FAM SINE Alu 1 149 -36 1084 196 14 14 chr15 44311016 44311235 -41384519 - AluJb SINE Alu -8 304 86 2165 110 0 3 chr15 44311246 44311537 -41384217 - AluSx SINE Alu -22 290 1 24 0 0 0 chr15 44311566 44311590 -41384164 + AT_rich Low_complexity Low_complexity 1 24 0 193 270 284 0 chr15 44312129 44312203 -41383551 + L2 LINE L2 3137 3231 -41 651 211 160 64 chr15 44312916 44313093 -41382661 + L1MC4a LINE L1 5739 5898 -1910 441 0 0 0 chr15 44313093 44313142 -41382612 + (CA)n Simple_repeat Simple_repeat 2 50 0 651 211 160 64 chr15 44313142 44313154 -41382600 + L1MC4a LINE L1 5898 5907 -1901 2366 60 11 0 chr15 44313154 44313439 -41382315 - AluSc SINE Alu -21 288 1 651 211 160 64 chr15 44313439 44313623 -41382131 + L1MC4a LINE L1 5907 6149 -1659 24 32 0 0 chr15 44313688 44313719 -41382035 + AT_rich Low_complexity Low_complexity 1 31 0 300 284 68 54 chr15 44314187 44314335 -41381419 + L1ME1 LINE L1 5765 5914 -207 2071 135 3 0 chr15 44314335 44314631 -41381123 - AluSx SINE Alu -15 297 1 1822 156 0 40 chr15 44314652 44314953 -41380801 - AluJo SINE Alu -22 290 2 2243 81 40 3 chr15 44316069 44316365 -41379389 + AluSp SINE Alu 1 307 -6 207 0 0 0 chr15 44316365 44316388 -41379366 + (TA)n Simple_repeat Simple_repeat 1 23 0 1834 199 66 27 chr15 44317329 44317737 -41378017 + MSTB LTR MaLR 1 424 -2 1547 192 34 0 chr15 44317874 44318166 -41377588 + AluJb SINE Alu 9 310 -2 360 179 205 43 chr15 44318283 44318400 -41377354 + L1ME1 LINE L1 6026 6161 -5 503 146 85 123 chr15 44318480 44318610 -41377144 - FLAM_A SINE Alu -8 125 1 1829 240 72 38 chr15 44319574 44320225 -41375529 - L1MC4 LINE L1 -132 7910 7238 2092 204 91 49 chr15 44320226 44320775 -41374979 - L1MC4 LINE L1 -966 7076 6499 2526 59 0 7 chr15 44320775 44321080 -41374674 + AluY SINE Alu 1 303 -8 2092 204 91 49 chr15 44321080 44321122 -41374632 - L1MC4 LINE L1 -1543 6499 6460 220 313 110 66 chr15 44322311 44322493 -41373261 - MIR3 SINE MIR -3 205 16 24 32 0 0 chr15 44322601 44322632 -41373122 + AT_rich Low_complexity Low_complexity 1 31 0 413 301 94 127 chr15 44322725 44322890 -41372864 + L2 LINE L2 2857 3026 -246 6330 30 0 0 chr15 44322890 44323628 -41372126 - L1PA3 LINE L1 0 6155 5418 413 301 94 127 chr15 44323628 44323888 -41371866 + L2 LINE L2 3026 3268 -4 570 195 97 9 chr15 44324888 44325001 -41370753 + FLAM_C SINE Alu 1 123 -20 2281 112 0 6 chr15 44325411 44325725 -41370029 - AluSx SINE Alu 0 312 1 21 71 0 0 chr15 44325773 44325815 -41369939 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr15 44325970 44325991 -41369763 + AT_rich Low_complexity Low_complexity 1 21 0 861 194 0 35 chr15 44326083 44326253 -41369501 + L1MC4 LINE L1 7322 7485 -557 802 151 8 0 chr15 44326253 44326372 -41369382 + FLAM_C SINE Alu 1 120 -23 842 243 149 18 chr15 44326523 44326865 -41368889 + L1MC4 LINE L1 7482 7868 -174 295 302 79 48 chr15 44327003 44327016 -41368738 + MIR SINE MIR 21 32 -176 2312 105 0 0 chr15 44327016 44327312 -41368442 - AluSx SINE Alu -14 298 3 295 302 79 48 chr15 44327312 44327424 -41368330 + MIR SINE MIR 32 150 -58 315 0 0 0 chr15 44327550 44327585 -41368169 + (TA)n Simple_repeat Simple_repeat 2 36 0 883 138 0 0 chr15 44327585 44327715 -41368039 - AluJb SINE Alu -182 130 1 850 167 0 0 chr15 44328108 44328240 -41367514 - AluSq/x SINE Alu -181 132 1 1950 125 7 3 chr15 44328341 44328630 -41367124 + AluSg SINE Alu 1 290 -20 700 169 0 8 chr15 44329083 44329201 -41366553 - Tigger1 DNA MER2_type 0 2418 2302 2193 102 10 0 chr15 44329204 44329498 -41366256 + AluSg SINE Alu 1 297 -13 581 248 0 0 chr15 44329579 44329704 -41366050 + FLAM_A SINE Alu 10 134 -8 1721 122 31 0 chr15 44329761 44330016 -41365738 + AluSx SINE Alu 1 263 -49 851 153 0 0 chr15 44330126 44330250 -41365504 - FRAM SINE Alu -20 156 33 1187 136 25 35 chr15 44330411 44330610 -41365144 + AluJo SINE Alu 104 300 -12 2304 101 10 0 chr15 44330612 44330910 -41364844 + AluSx SINE Alu 8 308 -4 250 354 76 21 chr15 44331356 44331500 -41364254 + L2 LINE L2 3121 3272 0 2052 120 20 0 chr15 44332138 44332439 -41363315 + AluSx SINE Alu 1 307 -5 2013 140 0 3 chr15 44333453 44333745 -41362009 - AluSx SINE Alu -21 291 1 2183 91 7 3 chr15 44333825 44334137 -41361617 - AluSx SINE Alu 0 313 1 491 235 86 39 chr15 44334310 44334544 -41361210 + L1ME4a LINE L1 5611 5855 -266 2353 86 0 3 chr15 44334854 44335155 -41360599 - AluSg SINE Alu -10 300 1 424 269 62 0 chr15 44335451 44335596 -41360158 + MER103 DNA DNA 11 164 -2 630 135 0 0 chr15 44335740 44335829 -41359925 + AluJ/FLAM SINE Alu 1 89 -223 406 224 42 52 chr15 44336025 44336063 -41359691 - L1ME4a LINE L1 -2 6119 6082 1671 169 11 0 chr15 44336063 44336341 -41359413 + AluJb SINE Alu 25 305 -7 406 224 42 52 chr15 44336341 44336494 -41359260 - L1ME4a LINE L1 -39 6082 5930 965 162 0 0 chr15 44336657 44336805 -41358949 - FRAM SINE Alu -19 157 10 1229 123 18 0 chr15 44337337 44337508 -41358246 + AluJo SINE Alu 1 174 -138 22 35 0 0 chr15 44337936 44337965 -41357789 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 44338161 44338182 -41357572 + AT_rich Low_complexity Low_complexity 1 21 0 340 228 80 80 chr15 44340338 44340500 -41355254 + MIR SINE MIR 101 262 0 199 272 37 62 chr15 44340664 44340745 -41355009 - L2 LINE L2 -63 3250 3172 1242 130 5 15 chr15 44340800 44341000 -41354754 + AluJb SINE Alu 1 198 -114 1125 163 0 5 chr15 44341101 44341285 -41354469 - AluJo SINE Alu -125 187 5 204 200 0 0 chr15 44341467 44341512 -41354242 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 2102 105 21 3 chr15 44342124 44342410 -41353344 - AluSx SINE Alu -21 291 1 860 126 7 28 chr15 44342676 44342819 -41352935 + AluJo SINE Alu 85 224 -88 183 80 0 0 chr15 44342819 44342844 -41352910 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 168 0 38 chr15 44342912 44343227 -41352527 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr15 44344271 44344292 -41351462 + AT_rich Low_complexity Low_complexity 1 21 0 395 295 94 0 chr15 44344342 44344491 -41351263 + L2 LINE L2 2245 2407 -907 1011 110 55 0 chr15 44344565 44344711 -41351043 + AluSg/x SINE Alu 69 222 -88 1335 110 50 41 chr15 44345209 44345428 -41350326 - AluSx SINE Alu -91 221 1 21 36 0 0 chr15 44345892 44345920 -41349834 + AT_rich Low_complexity Low_complexity 1 28 0 2122 143 0 13 chr15 44346257 44346572 -41349182 - AluSq SINE Alu -2 311 1 645 104 0 61 chr15 44346748 44346863 -41348891 - FLAM_A SINE Alu 0 142 35 289 291 88 61 chr15 44347267 44347415 -41348339 - MIR3 SINE MIR -25 183 32 299 309 0 0 chr15 44347506 44347574 -41348180 - MIR SINE MIR -63 145 78 2241 109 3 10 chr15 44347946 44348258 -41347496 + AluSg SINE Alu 1 310 0 1177 159 54 101 chr15 44348984 44349110 -41346644 - AluJo SINE Alu -47 265 135 1535 145 0 0 chr15 44349110 44349324 -41346430 - AluSg/x SINE Alu -14 296 83 1177 159 54 101 chr15 44349324 44349354 -41346400 - AluJo SINE Alu -177 135 105 207 0 0 0 chr15 44349354 44349377 -41346377 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1177 159 54 101 chr15 44349377 44349496 -41346258 - AluJo SINE Alu -207 105 2 352 194 0 0 chr15 44349588 44349660 -41346094 - AluJ/FLAM SINE Alu -230 72 1 559 260 165 0 chr15 44350131 44350331 -41345423 - MIR SINE MIR -1 261 29 338 358 116 52 chr15 44350443 44351345 -41344409 - L2 LINE L2 -192 3080 2100 186 366 21 0 chr15 44351409 44351502 -41344252 - L2 LINE L2 -1410 1904 1810 300 271 164 29 chr15 44351644 44351925 -41343829 + L2 LINE L2 2847 3165 -148 650 254 18 146 chr15 44351929 44352076 -41343678 + MIR SINE MIR 1 97 -165 189 107 0 0 chr15 44352076 44352104 -41343650 + (CA)n Simple_repeat Simple_repeat 2 29 0 650 254 18 146 chr15 44352104 44352236 -41343518 + MIR SINE MIR 97 244 -18 26 0 0 0 chr15 44352548 44352574 -41343180 + AT_rich Low_complexity Low_complexity 1 26 0 3377 202 89 38 chr15 44352586 44354012 -41341742 + L1MC3 LINE L1 6278 7777 -8 1846 113 84 7 chr15 44354323 44354597 -41341157 + AluSx SINE Alu 1 295 -17 1747 160 48 14 chr15 44354676 44354969 -41340785 + AluJb SINE Alu 1 303 -9 21 57 0 0 chr15 44355010 44355045 -41340709 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr15 44355112 44355134 -41340620 + AT_rich Low_complexity Low_complexity 1 22 0 628 271 55 7 chr15 44355488 44355778 -41339976 + L1ME3A LINE L1 5585 5889 -295 198 244 0 0 chr15 44355861 44355906 -41339848 - MIR SINE MIR -33 229 185 921 136 0 0 chr15 44355906 44356038 -41339716 + FLAM_C SINE Alu 1 132 -1 705 264 19 6 chr15 44356064 44356223 -41339531 - MIR SINE MIR -65 197 37 25 31 0 0 chr15 44356479 44356511 -41339243 + AT_rich Low_complexity Low_complexity 1 32 0 198 354 15 15 chr15 44357270 44357335 -41338419 + L2 LINE L2 3168 3232 -40 288 117 0 5 chr15 44357536 44357588 -41338166 - Alu SINE Alu -3 305 261 1361 91 21 0 chr15 44357698 44357885 -41337869 - AluSp SINE Alu -122 191 1 767 296 66 16 chr15 44357885 44358202 -41337552 - L1MEd LINE L1 -5542 577 245 734 138 0 9 chr15 44358206 44358315 -41337439 + FLAM_C SINE Alu 4 111 -32 304 289 69 57 chr15 44358347 44358506 -41337248 - L1MEd LINE L1 -5862 257 97 2278 84 0 3 chr15 44358526 44358834 -41336920 - AluSq SINE Alu 0 307 1 1914 168 3 10 chr15 44359807 44360104 -41335650 - AluJo SINE Alu -17 295 1 4071 165 65 12 chr15 44360182 44361145 -41334609 - L1MB8 LINE L1 -13 6165 5152 281 275 88 11 chr15 44361156 44361247 -41334507 - MIR SINE MIR -140 122 25 2144 147 3 0 chr15 44361454 44361766 -41333988 + AluSp SINE Alu 1 313 0 2155 111 0 27 chr15 44361929 44362226 -41333528 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 44362237 44362259 -41333495 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 44362654 44362682 -41333072 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr15 44362932 44362958 -41332796 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr15 44363274 44363306 -41332448 + (T)n Simple_repeat Simple_repeat 1 32 0 2532 269 159 19 chr15 44363498 44364461 -41331293 + L2 LINE L2 1534 2631 -683 568 221 192 6 chr15 44364463 44364635 -41331119 - MER58C DNA MER1_type 0 215 12 693 204 40 0 chr15 44364640 44364792 -41330962 + L2 LINE L2 2628 2785 -529 22 70 0 0 chr15 44365030 44365073 -41330681 + AT_rich Low_complexity Low_complexity 1 43 0 2288 138 5 8 chr15 44365081 44365451 -41330303 - L1PA16 LINE L1 0 6166 5798 450 260 131 51 chr15 44365532 44365943 -41329811 - L1MC/D LINE L1 -1992 5816 5373 332 291 45 30 chr15 44365990 44366124 -41329630 - L1ME LINE L1 -351 5813 5678 609 309 73 4 chr15 44366136 44366369 -41329385 - MIR SINE MIR -11 251 3 307 302 174 29 chr15 44366370 44366542 -41329212 - L1ME LINE L1 -458 5663 5467 1544 199 13 22 chr15 44366569 44366880 -41328874 - AluJo SINE Alu -4 308 1 1803 174 0 13 chr15 44366939 44367237 -41328517 - AluJo SINE Alu -3 309 16 183 100 0 0 chr15 44367256 44367286 -41328468 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2432 87 3 0 chr15 44367518 44367827 -41327927 - AluSg SINE Alu 0 310 1 751 184 25 13 chr15 44368027 44368185 -41327569 + MIR SINE MIR 2 161 -101 316 365 12 24 chr15 44368291 44368458 -41327296 - MIR3 SINE MIR -9 199 35 1855 103 18 118 chr15 44368468 44368797 -41326957 - AluSx SINE Alu -16 296 1 2316 95 23 0 chr15 44368985 44369290 -41326464 + AluSx SINE Alu 1 312 0 2193 99 0 23 chr15 44369509 44369813 -41325941 - AluSq SINE Alu -16 297 1 22 0 0 0 chr15 44370045 44370067 -41325687 + AT_rich Low_complexity Low_complexity 1 22 0 478 284 10 56 chr15 44371028 44371225 -41324529 - L2 LINE L2 -149 3164 2977 * 2103 261 119 13 chr15 44371224 44371930 -41323824 + L2 LINE L2 2196 2976 -338 1145 253 107 36 chr15 44371933 44372589 -41323165 - L2 LINE L2 0 3313 2606 463 208 160 0 chr15 44372764 44372889 -41322865 - L2 LINE L2 -4 3309 3165 1224 127 0 6 chr15 44372912 44372926 -41322828 + AluSg/x SINE Alu 118 131 -179 2021 76 83 45 chr15 44372926 44373214 -41322540 + AluSx SINE Alu 1 299 -13 1224 127 0 6 chr15 44373214 44373372 -41322382 + AluSg/x SINE Alu 131 289 -21 343 308 112 7 chr15 44373399 44373542 -41322212 - L2 LINE L2 -1443 1871 1714 22 56 0 0 chr15 44373840 44373876 -41321878 + AT_rich Low_complexity Low_complexity 1 36 0 256 247 94 71 chr15 44373997 44374082 -41321672 - MIR SINE MIR -88 120 34 21 57 0 0 chr15 44374238 44374273 -41321481 + AT_rich Low_complexity Low_complexity 1 35 0 755 154 34 0 chr15 44374448 44374565 -41321189 + FLAM_A SINE Alu 1 121 -12 183 129 0 0 chr15 44374612 44374643 -41321111 + (TA)n Simple_repeat Simple_repeat 1 31 0 1606 189 0 24 chr15 44374689 44374986 -41320768 - AluJo SINE Alu -22 290 1 1715 166 0 60 chr15 44375017 44375331 -41320423 - AluJo SINE Alu -11 301 7 216 97 0 0 chr15 44375353 44375384 -41320370 + (T)n Simple_repeat Simple_repeat 1 31 0 1938 101 4 4 chr15 44375509 44375766 -41319988 - AluSx SINE Alu -55 257 1 304 308 77 0 chr15 44375878 44376008 -41319746 - MIR3 SINE MIR -4 204 65 523 230 18 9 chr15 44377262 44377375 -41318379 - MIR3 SINE MIR -6 202 89 289 341 59 0 chr15 44377568 44377653 -41318101 + L2 LINE L2 3168 3257 -15 34 55 0 0 chr15 44378225 44378280 -41317474 + AT_rich Low_complexity Low_complexity 1 55 0 1763 186 14 0 chr15 44378306 44378596 -41317158 + AluJb SINE Alu 1 294 -18 2634 164 54 27 chr15 44378692 44379099 -41316655 - Charlie1 DNA MER1_type -145 2616 2185 2057 119 13 35 chr15 44379099 44379411 -41316343 + AluSx SINE Alu 1 305 -7 2634 164 54 27 chr15 44379411 44379632 -41316122 - Charlie1 DNA MER1_type -576 2185 1971 2188 96 3 20 chr15 44379737 44379895 -41315859 - AluSx SINE Alu -24 288 136 2342 87 3 7 chr15 44379895 44380204 -41315550 - AluSp SINE Alu -5 308 1 2188 96 3 20 chr15 44380204 44380338 -41315416 - AluSx SINE Alu -176 136 1 472 244 0 31 chr15 44381114 44381241 -41314513 - LTR67 LTR ERVL -8 549 427 234 0 0 0 chr15 44381384 44381410 -41314344 + (T)n Simple_repeat Simple_repeat 1 26 0 522 221 36 7 chr15 44381410 44381550 -41314204 - MLT1A1 LTR MaLR -48 317 174 2528 81 0 0 chr15 44381676 44381986 -41313768 - AluSg SINE Alu 0 310 1 293 244 0 37 chr15 44382044 44382126 -41313628 - LTR67 LTR ERVL -476 81 3 1113 231 85 70 chr15 44385140 44385178 -41310576 + L1ME3A LINE L1 5565 5601 -569 324 0 0 0 chr15 44385178 44385214 -41310540 + (TG)n Simple_repeat Simple_repeat 2 37 0 1113 231 85 70 chr15 44385214 44385390 -41310364 + L1ME3A LINE L1 5601 5773 -397 2298 90 0 34 chr15 44385390 44385711 -41310043 - AluSq SINE Alu -2 311 2 1113 231 85 70 chr15 44385711 44386050 -41309704 + L1ME3A LINE L1 5773 6127 -43 1242 137 78 90 chr15 44386096 44386352 -41309402 + AluJb SINE Alu 1 253 -59 791 182 20 20 chr15 44386815 44386963 -41308791 + FRAM SINE Alu 10 157 -19 708 208 94 6 chr15 44386966 44387125 -41308629 - L2 LINE L2 -2 3311 3139 299 308 47 0 chr15 44387124 44387231 -41308523 + MIR3 SINE MIR 95 206 -2 * 212 327 91 18 chr15 44387267 44387377 -41308377 - L2 LINE L2 -2 3311 3194 484 248 81 19 chr15 44387748 44387909 -41307845 + MER8 DNA MER2_type 7 177 -62 382 141 0 77 chr15 44387941 44388019 -41307735 - Tigger2 DNA MER2_type -2646 72 1 2262 103 0 10 chr15 44388144 44388445 -41307309 - AluSg SINE Alu -12 298 1 537 206 35 28 chr15 44388539 44388680 -41307074 + L1MD2 LINE L1 5979 6120 -239 1482 151 75 19 chr15 44388681 44389000 -41306754 + L1MD2 LINE L1 6021 6357 -2 2176 123 7 0 chr15 44389422 44389722 -41306032 - AluJo SINE Alu -10 302 1 39 22 0 0 chr15 44389727 44389773 -41305981 + AT_rich Low_complexity Low_complexity 1 46 0 2110 125 0 0 chr15 44389776 44390065 -41305689 - AluSx SINE Alu -23 289 1 734 214 0 0 chr15 44390067 44390198 -41305556 - AluJo/FLAM SINE Alu -171 131 1 1745 149 47 20 chr15 44390710 44391006 -41304748 - AluJb SINE Alu -6 306 3 1046 152 28 60 chr15 44391516 44391733 -41304021 + MER2 DNA MER2_type 1 210 -135 189 0 0 0 chr15 44391763 44391784 -41303970 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 1026 191 0 26 chr15 44391785 44391979 -41303775 - AluJb SINE Alu -30 282 94 503 184 0 196 chr15 44392080 44392150 -41303604 - Charlie1a DNA MER1_type -2616 145 63 2156 133 0 0 chr15 44392150 44392458 -41303296 - AluSx SINE Alu -4 308 1 1884 128 46 4 chr15 44392460 44392741 -41303013 - AluJb SINE Alu -19 293 1 503 184 0 196 chr15 44392741 44392835 -41302919 - Charlie1a DNA MER1_type -2699 62 11 8398 50 0 0 chr15 44392932 44393901 -41301853 - LTR5 LTR ERVK 0 969 1 777 282 19 5 chr15 44395338 44395554 -41300200 - MER58A DNA MER1_type -2 222 4 209 171 0 0 chr15 44396142 44396177 -41299577 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 70 0 0 chr15 44396234 44396277 -41299477 + AT_rich Low_complexity Low_complexity 1 43 0 2345 138 84 48 chr15 44396645 44397145 -41298609 - L1MB8 LINE L1 -5 6173 5656 24 0 0 0 chr15 44397837 44397861 -41297893 + AT_rich Low_complexity Low_complexity 1 24 0 2381 91 0 16 chr15 44398765 44399083 -41296671 + AluSp SINE Alu 1 313 0 2208 109 20 0 chr15 44399253 44399557 -41296197 + AluSx SINE Alu 3 312 0 25 51 0 0 chr15 44399583 44399622 -41296132 + AT_rich Low_complexity Low_complexity 1 39 0 1538 174 16 49 chr15 44399912 44400077 -41295677 - AluJo SINE Alu -15 297 145 2515 72 0 3 chr15 44400077 44400381 -41295373 - AluY SINE Alu -6 305 3 1538 174 16 49 chr15 44400381 44400520 -41295234 - AluJo SINE Alu -167 145 3 1850 137 0 7 chr15 44400575 44400852 -41294902 - AluSx SINE Alu -9 303 29 443 195 49 0 chr15 44401297 44401379 -41294375 + AluJ/FLAM SINE Alu 1 86 -226 318 290 71 60 chr15 44401810 44401848 -41293906 - MIR SINE MIR -66 196 160 2426 83 0 3 chr15 44401848 44402160 -41293594 - AluY SINE Alu 0 311 1 318 290 71 60 chr15 44402160 44402304 -41293450 - MIR SINE MIR -102 160 12 275 346 107 31 chr15 44402561 44402720 -41293034 - L2 LINE L2 -1 3271 3101 1459 187 18 25 chr15 44403195 44403479 -41292275 + AluJo SINE Alu 1 282 -30 1974 164 15 3 chr15 44403654 44403989 -41291765 + MER44D DNA MER2_type 1 609 0 398 59 0 0 chr15 44404886 44404937 -41290817 - AluSc SINE Alu -6 293 243 1478 194 67 11 chr15 44405071 44405354 -41290400 - AluJb SINE Alu -13 299 1 272 83 0 0 chr15 44405798 44405834 -41289920 + AluYa5 SINE Alu 157 192 -109 546 198 37 25 chr15 44508607 44508769 -41186985 - MER112 DNA MER1_type -50 210 47 1851 173 21 0 chr15 44508827 44509116 -41186638 + AluJo SINE Alu 1 295 -17 712 128 0 0 chr15 44509553 44509662 -41186092 - AluSg/x SINE Alu 0 310 202 2816 139 12 16 chr15 44510012 44510528 -41185226 - L1MA6 LINE L1 -523 5768 5255 1896 139 42 77 chr15 44510537 44510989 -41184765 + L1MA6 LINE L1 5781 6216 -84 253 232 0 0 chr15 44511089 44511145 -41184609 + FLAM SINE Alu 77 132 -1 303 314 101 47 chr15 44512311 44512480 -41183274 - L2 LINE L2 -7 3265 3088 246 62 0 0 chr15 44512532 44512564 -41183190 + (TG)n Simple_repeat Simple_repeat 1 32 0 447 287 73 61 chr15 44512610 44512857 -41182897 - MIR SINE MIR -8 254 5 325 274 73 96 chr15 44512864 44513180 -41182574 - L2 LINE L2 -229 3043 2737 219 69 0 0 chr15 44513750 44513779 -41181975 + (TG)n Simple_repeat Simple_repeat 2 30 0 775 114 9 0 chr15 44514277 44514382 -41181372 + U6 snRNA snRNA 1 106 -1 2187 122 0 0 chr15 44514965 44515252 -41180502 - AluSx SINE Alu -25 287 1 183 234 0 0 chr15 44515343 44515467 -41180287 + (TA)n Simple_repeat Simple_repeat 1 124 0 27 0 0 0 chr15 44515585 44515612 -41180142 + AT_rich Low_complexity Low_complexity 1 27 0 389 164 82 14 chr15 44517909 44517982 -41177772 + MIR SINE MIR 77 154 -108 496 164 37 122 chr15 44518035 44518119 -41177635 + Tigger1 DNA MER2_type 1 62 -2356 2176 106 39 0 chr15 44518119 44518402 -41177352 + AluSx SINE Alu 1 294 -18 496 164 37 122 chr15 44518402 44518506 -41177248 + Tigger1 DNA MER2_type 62 173 -2245 * 1366 99 33 14 chr15 44518483 44518696 -41177058 + Tigger1 DNA MER2_type 2202 2418 0 183 250 22 76 chr15 44519054 44519146 -41176608 - L2 LINE L2 -541 2773 2687 281 239 82 55 chr15 44519577 44519728 -41176026 + MIR3 SINE MIR 4 160 -84 251 185 37 0 chr15 44521008 44521062 -41174692 + CT-rich Low_complexity Low_complexity 4 59 0 190 321 116 0 chr15 44521414 44521526 -41174228 - MIR3 SINE MIR -7 201 77 304 331 47 61 chr15 44522848 44522996 -41172758 + MIR SINE MIR 37 182 -80 255 267 0 69 chr15 44523080 44523181 -41172573 + MIR SINE MIR 168 261 -1 216 284 104 0 chr15 44523545 44523612 -41172142 - MIR SINE MIR -71 191 118 501 275 66 36 chr15 44523648 44523815 -41171939 + MIR SINE MIR 48 219 -43 231 267 67 44 chr15 44525195 44525285 -41170469 - L2 LINE L2 -30 3242 3151 26 50 0 0 chr15 44526394 44526434 -41169320 + AT_rich Low_complexity Low_complexity 1 40 0 309 371 78 12 chr15 44526539 44526795 -41168959 + LTR16B LTR ERVL 43 315 -149 2317 111 0 3 chr15 44527940 44528237 -41167517 - AluSq SINE Alu -17 296 1 947 178 0 0 chr15 44528241 44528387 -41167367 - FRAM SINE Alu -30 146 1 459 329 34 34 chr15 44528670 44528907 -41166847 + MIR SINE MIR 20 256 -6 1473 143 24 131 chr15 44529644 44529818 -41165936 - AluSx SINE Alu -2 300 178 450 0 0 0 chr15 44529818 44529868 -41165886 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1473 143 24 131 chr15 44529868 44530029 -41165725 - AluSx SINE Alu -124 178 1 424 285 40 19 chr15 44530030 44530211 -41165543 - MIR SINE MIR -65 197 18 948 198 198 25 chr15 44530224 44530543 -41165211 - MLT1A2 LTR MaLR 0 374 1 345 257 153 21 chr15 44530564 44530656 -41165098 + MIR3 SINE MIR 41 119 -89 2377 100 0 0 chr15 44530656 44530955 -41164799 + AluSx SINE Alu 1 299 -13 345 257 153 21 chr15 44530955 44531006 -41164748 + MIR3 SINE MIR 119 203 -5 351 214 36 0 chr15 44531968 44532052 -41163702 - MIR SINE MIR -116 146 60 2423 144 35 48 chr15 44532575 44533033 -41162721 + LTR32 LTR ERVL 20 471 0 487 238 55 64 chr15 44534047 44534249 -41161505 - MIR SINE MIR -35 227 28 1876 249 104 44 chr15 44534361 44535171 -41160583 - L1PBa LINE L1 -6000 863 6 359 141 94 12 chr15 44535182 44535267 -41160487 - L1 LINE L1 -814 5332 5241 338 190 0 0 chr15 44535270 44535328 -41160426 + Tigger3(Golem) DNA MER2_type 3 60 -2969 905 137 0 0 chr15 44535340 44535471 -41160283 + Tigger3(Golem) DNA MER2_type 2896 3026 -3 262 227 0 27 chr15 44535472 44535547 -41160207 - L1 LINE L1 -904 5242 5170 1396 198 4 12 chr15 44535547 44535804 -41159950 - AluJo SINE Alu -14 298 44 1046 214 57 0 chr15 44535805 44536085 -41159669 - L1 LINE L1 -957 5189 4894 1060 156 17 22 chr15 44536788 44536962 -41158792 - AluSc SINE Alu -12 297 124 450 0 0 0 chr15 44536962 44537012 -41158742 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 191 123 0 158 chr15 44537348 44537405 -41158349 + MIR SINE MIR 88 135 -73 261 318 6 46 chr15 44537667 44537840 -41157914 + GA-rich Low_complexity Low_complexity 3 168 0 279 279 16 25 chr15 44537928 44538050 -41157704 + GA-rich Low_complexity Low_complexity 3 123 0 6876 142 48 2 chr15 44538818 44540375 -41155379 + L1PBa LINE L1 831 2632 -4231 250 205 64 64 chr15 44540480 44540558 -41155196 + MIR SINE MIR 178 255 -7 688 216 13 57 chr15 44540726 44540939 -41154815 + MIR SINE MIR 47 248 -14 785 289 54 8 chr15 44541584 44541823 -41153931 + MIR SINE MIR 13 262 0 2286 73 0 17 chr15 44542777 44543090 -41152664 - AluY SINE Alu 0 308 1 635 294 0 0 chr15 44543242 44543388 -41152366 + MER91A DNA MER1_type 1 146 -50 1452 226 44 31 chr15 44543388 44543777 -41151977 - LTR16C LTR ERVL 0 491 98 192 208 0 21 chr15 44544284 44544332 -41151422 + L3 LINE CR1 1278 1324 -253 352 232 147 0 chr15 44544396 44544491 -41151263 - MIR SINE MIR -79 183 75 7081 192 36 3 chr15 44544751 44546411 -41149343 + L1PBa LINE L1 2692 4403 -2459 2087 114 20 13 chr15 44546417 44546715 -41149039 + AluSx SINE Alu 1 300 -12 965 103 14 0 chr15 44546715 44546860 -41148894 + L1MB3 LINE L1 5828 5974 -209 2240 98 6 47 chr15 44546960 44547278 -41148476 - AluSg SINE Alu -5 305 1 324 220 25 46 chr15 44549030 44549144 -41146610 + L1MC4 LINE L1 2000 6983 -1339 307 262 19 39 chr15 44549056 44549159 -41146595 - L1MC4 LINE L1 -1333 6709 6609 * 26 64 0 0 chr15 44549163 44549210 -41146544 + AT_rich Low_complexity Low_complexity 1 47 0 1976 114 3 37 chr15 44549210 44549507 -41146247 - AluSx SINE Alu -25 287 1 964 200 19 33 chr15 44549512 44549722 -41146032 - MIR SINE MIR -55 207 1 255 90 4 0 chr15 44549989 44550034 -41145720 - L1MB7 LINE L1 -1 6177 6132 344 281 36 14 chr15 44550436 44550575 -41145179 + LTR33 LTR ERVL 2 143 -378 743 255 0 5 chr15 44550681 44550873 -41144881 + LTR33 LTR ERVL 323 513 -8 417 245 90 19 chr15 44551072 44551227 -41144527 - Charlie8 DNA MER1_type -2138 279 114 189 250 0 0 chr15 44552067 44552107 -41143647 + L2 LINE L2 3179 3218 -95 245 284 0 0 chr15 44552409 44552476 -41143278 - MIR SINE MIR -63 145 79 290 242 15 0 chr15 44552570 44552636 -41143118 + L3 LINE CR1 1319 1385 -192 262 253 100 157 chr15 44553297 44553539 -41142215 + MIR SINE MIR 25 253 -9 295 227 219 31 chr15 44554685 44554813 -41140941 + MER5B DNA MER1_type 24 175 -3 229 246 121 0 chr15 44555421 44555515 -41140239 - MIR SINE MIR -90 118 4 251 267 44 0 chr15 44555756 44555846 -41139908 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 240 143 0 0 chr15 44556141 44556183 -41139571 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 309 268 118 39 chr15 44557154 44557281 -41138473 - MIR SINE MIR -122 140 4 239 321 170 0 chr15 44557439 44557545 -41138209 - MIR3 SINE MIR -83 125 2 199 176 0 0 chr15 44558463 44558497 -41137257 - MIR3 SINE MIR -41 167 134 672 241 12 6 chr15 44558520 44558690 -41137064 + L1ME LINE L1 15 185 -5885 991 265 123 37 chr15 44558712 44559109 -41136645 + L1ME LINE L1 244 692 -5378 2185 102 6 35 chr15 44559109 44559422 -41136332 + AluSg SINE Alu 1 304 -6 991 265 123 37 chr15 44559422 44559511 -41136243 + L1ME LINE L1 692 772 -5298 407 243 103 25 chr15 44560006 44560177 -41135577 - MIR3 SINE MIR -12 196 16 215 146 0 24 chr15 44560447 44560488 -41135266 + (TCTCC)n Simple_repeat Simple_repeat 2 41 0 339 275 94 22 chr15 44560606 44560744 -41135010 + MIR SINE MIR 51 198 -64 362 264 11 0 chr15 44560781 44560868 -41134886 - MIR SINE MIR -13 249 162 207 337 0 0 chr15 44561263 44561346 -41134408 + (TG)n Simple_repeat Simple_repeat 2 84 0 3171 136 32 11 chr15 44561347 44561587 -41134167 - MER44D DNA MER2_type -1882 605 371 2307 113 7 0 chr15 44561587 44561889 -41133865 + AluSx SINE Alu 1 304 -8 3171 136 32 11 chr15 44561889 44562178 -41133576 - MER44D DNA MER2_type -2116 371 10 202 200 0 0 chr15 44562182 44562222 -41133532 + (TG)n Simple_repeat Simple_repeat 1 40 0 348 348 6 11 chr15 44562246 44562427 -41133327 + (TG)n Simple_repeat Simple_repeat 1 180 0 584 296 38 76 chr15 44562610 44562792 -41132962 - L2 LINE L2 -340 2974 2809 2145 124 7 0 chr15 44562792 44563083 -41132671 + AluSx SINE Alu 1 293 -19 584 296 38 76 chr15 44563083 44563241 -41132513 - L2 LINE L2 -505 2809 2647 2456 90 3 0 chr15 44564014 44564324 -41131430 - AluY SINE Alu 0 311 1 762 192 0 0 chr15 44564546 44564671 -41131083 + FLAM_A SINE Alu 1 125 -8 2248 119 7 0 chr15 44565076 44565386 -41130368 - AluSx SINE Alu 0 312 1 834 144 0 0 chr15 44565389 44565514 -41130240 - AluJo/FLAM SINE Alu -175 127 3 24 0 0 0 chr15 44565781 44565805 -41129949 + AT_rich Low_complexity Low_complexity 1 24 0 1189 178 0 0 chr15 44566228 44566419 -41129335 + AluJb SINE Alu 120 310 -2 279 0 0 0 chr15 44566513 44566544 -41129210 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 319 192 178 55 chr15 44566589 44566735 -41129019 + L1ME4a LINE L1 5840 6003 -118 200 290 16 0 chr15 44566758 44566820 -41128934 - L2 LINE L2 -1 3312 3250 270 256 70 54 chr15 44567213 44567342 -41128412 + L3b LINE CR1 1273 1403 -180 217 254 0 108 chr15 44567706 44567836 -41127918 - L2 LINE L2 -2838 476 361 852 251 165 9 chr15 44567916 44568358 -41127396 + LTR33 LTR ERVL 1 511 -10 433 188 71 27 chr15 44568371 44568483 -41127271 - MIR SINE MIR -55 153 37 2251 117 3 3 chr15 44568898 44569206 -41126548 - AluSq SINE Alu -5 308 1 256 184 303 28 chr15 44570019 44570128 -41125626 + MIR3 SINE MIR 30 168 -40 2587 149 21 2 chr15 44570359 44570841 -41124913 - L1M2 LINE L1 -1560 4586 4096 * 4537 133 16 2 chr15 44570837 44571989 -41123765 + L1M2 LINE L1 4567 5734 -566 596 161 8 62 chr15 44572053 44572183 -41123571 - MER3 DNA MER1_type -22 187 65 260 331 26 13 chr15 44572430 44572581 -41123173 + (CA)n Simple_repeat Simple_repeat 2 154 0 421 255 95 80 chr15 44574076 44574276 -41121478 + L1MC4 LINE L1 7689 7891 -151 865 137 0 50 chr15 44574280 44574419 -41121335 + FLAM_C SINE Alu 1 132 -1 1916 178 0 9 chr15 44574439 44574754 -41121000 + AluJb SINE Alu 1 312 0 243 292 71 44 chr15 44574894 44575007 -41120747 + MIR SINE MIR 102 217 -45 3260 208 74 54 chr15 44575110 44575478 -41120276 + L1MDa LINE L1 18 377 -6163 1725 187 0 11 chr15 44575478 44575762 -41119992 + AluJo SINE Alu 1 281 -31 3260 208 74 54 chr15 44575762 44576861 -41118893 + L1MDa LINE L1 377 1749 -4791 2820 204 25 35 chr15 44576830 44576939 -41118815 + L1M4b LINE L1 1164 1273 -5269 * 2149 94 23 23 chr15 44576939 44577238 -41118516 + AluSg SINE Alu 1 299 -11 2820 204 25 35 chr15 44577238 44577932 -41117822 + L1M4b LINE L1 1273 1949 -4593 560 214 161 36 chr15 44578037 44578065 -41117689 - L2 LINE L2 -163 3150 3127 189 0 0 0 chr15 44578065 44578086 -41117668 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 560 214 161 36 chr15 44578086 44578378 -41117376 - L2 LINE L2 -186 3127 2803 796 281 29 12 chr15 44579024 44579270 -41116484 - MIR SINE MIR 0 262 13 305 292 10 10 chr15 44579263 44579359 -41116395 + L2 LINE L2 2963 3058 -214 * 183 319 103 43 chr15 44579432 44579617 -41116137 - L2 LINE L2 -1 3271 3076 203 118 0 0 chr15 44579785 44579819 -41115935 - L2 LINE L2 0 3313 3280 223 274 42 63 chr15 44580129 44580224 -41115530 + L2 LINE L2 3177 3269 -3 427 290 114 8 chr15 44580624 44580755 -41114999 + MIR SINE MIR 21 165 -97 231 273 0 0 chr15 44580991 44581057 -41114697 + L1MEd LINE L1 80 145 -5974 800 124 150 0 chr15 44581327 44581480 -41114274 + L1MB5 LINE L1 5992 6167 -7 724 237 85 91 chr15 44581675 44582203 -41113551 + L1MEd LINE L1 700 1224 -4895 314 313 45 6 chr15 44582322 44582498 -41113256 + L1MEd LINE L1 1409 1591 -4538 2339 57 43 0 chr15 44583211 44583490 -41112264 + AluY SINE Alu 13 303 -8 1125 121 50 16 chr15 44583499 44583681 -41112073 + MER5A DNA MER1_type 2 189 0 918 242 5 0 chr15 44583856 44584046 -41111708 + MLT1I LTR MaLR 201 391 -18 210 245 0 0 chr15 44584209 44584258 -41111496 + GA-rich Low_complexity Low_complexity 2 50 0 232 250 163 0 chr15 44584580 44584672 -41111082 - MIR3 SINE MIR -91 117 11 259 265 15 0 chr15 44585117 44585185 -41110569 + MLT1B LTR MaLR 31 99 -291 1293 198 158 5 chr15 44585227 44585606 -41110148 + MLT1C LTR MaLR 31 467 0 335 275 32 83 chr15 44585785 44586003 -41109751 + L2 LINE L2 3098 3304 -9 306 256 52 105 chr15 44586378 44586569 -41109185 - MIR SINE MIR -69 193 13 * 1102 236 9 0 chr15 44586514 44586734 -41109020 + MIR SINE MIR 20 241 -21 1940 122 0 0 chr15 44587670 44587933 -41107821 - AluSx SINE Alu -2 310 48 4620 145 11 14 chr15 44587933 44588766 -41106988 - L1MB8 LINE L1 -40 6138 5309 217 207 147 78 chr15 44588792 44588908 -41106846 - L2 LINE L2 -25 3288 3165 1305 200 136 60 chr15 44590289 44590584 -41105170 - L1MC3 LINE L1 -6 7779 7508 2145 142 3 0 chr15 44590584 44590894 -41104860 + AluJb SINE Alu 1 311 -1 1305 200 136 60 chr15 44590894 44591123 -41104631 - L1MC3 LINE L1 -277 7508 5792 1218 137 106 111 chr15 44591123 44591510 -41104244 - MLT1B LTR MaLR 0 390 6 2637 164 23 87 chr15 44591516 44592496 -41103258 - L1MC3 LINE L1 -564 5795 4887 350 347 16 8 chr15 44592545 44592669 -41103085 - MIR SINE MIR -63 145 21 377 315 48 14 chr15 44593608 44593754 -41102000 + MIR3 SINE MIR 36 186 -22 412 213 0 0 chr15 44594133 44594213 -41101541 + MIR3 SINE MIR 99 178 -30 1179 207 78 41 chr15 44594263 44594582 -41101172 - LTR16A LTR ERVL -6 444 114 185 278 19 0 chr15 44594907 44594961 -41100793 - L2 LINE L2 -9 3263 3209 207 0 0 0 chr15 44595318 44595341 -41100413 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 204 298 64 73 chr15 44595434 44595652 -41100102 - L3b LINE CR1 -71 1512 1297 252 273 26 13 chr15 44596476 44596553 -41099201 + CT-rich Low_complexity Low_complexity 1 78 0 2375 87 17 0 chr15 44597090 44597390 -41098364 + AluSq SINE Alu 1 305 -8 343 195 0 0 chr15 44597621 44597703 -41098051 - MER3 DNA MER1_type -2 207 126 820 157 0 8 chr15 44597704 44597838 -41097916 + FLAM_C SINE Alu 1 133 0 334 162 0 27 chr15 44597845 44597919 -41097835 + L1M4 LINE L1 2281 2352 -3794 552 202 0 0 chr15 44597941 44598040 -41097714 + L2 LINE L2 3193 3291 -22 380 314 80 0 chr15 44598054 44598191 -41097563 + MIR3 SINE MIR 51 198 -10 606 234 184 36 chr15 44599217 44599554 -41096200 + LTR33 LTR ERVL 44 430 -91 2534 69 0 3 chr15 44600077 44600382 -41095372 - AluY SINE Alu -7 304 1 571 193 101 0 chr15 44601215 44601334 -41094420 - MER96 DNA MER1_type? 0 175 45 3950 138 36 29 chr15 44601350 44601498 -41094256 - L1MD1 LINE L1 -18 6224 6078 1627 166 51 27 chr15 44601498 44601793 -41093961 + AluJo SINE Alu 1 302 -10 3950 138 36 29 chr15 44601793 44602253 -41093501 - L1MD1 LINE L1 -164 6078 5608 2497 70 3 0 chr15 44602253 44602554 -41093200 - AluY SINE Alu -9 302 1 3950 138 36 29 chr15 44602554 44602703 -41093051 - L1MD1 LINE L1 -634 5608 5461 2336 110 16 0 chr15 44602716 44603024 -41092730 - AluSq SINE Alu 0 313 1 227 91 0 0 chr15 44603024 44603057 -41092697 - L1MDa LINE L1 -3928 2612 2580 260 159 72 0 chr15 44603077 44603146 -41092608 - L1MDa LINE L1 -3939 2601 2528 581 251 87 20 chr15 44603665 44603793 -41091961 + MIR SINE MIR 55 203 -59 2066 137 0 7 chr15 44603793 44604144 -41091610 - AluSx SINE Alu 0 349 1 581 251 87 20 chr15 44604144 44604209 -41091545 + MIR SINE MIR 203 262 0 2393 83 0 16 chr15 44604222 44604536 -41091218 - AluSc SINE Alu 0 309 1 635 171 0 31 chr15 44605942 44606071 -41089683 + FLAM_A SINE Alu 14 138 -4 190 309 29 0 chr15 44606082 44606150 -41089604 - L3b LINE CR1 -215 1368 1299 483 240 162 7 chr15 44606156 44606310 -41089444 - MER5B DNA MER1_type 0 178 1 740 171 8 0 chr15 44606338 44606461 -41089293 - FRAM SINE Alu -19 157 34 531 268 109 0 chr15 44606533 44606716 -41089038 - MIR SINE MIR -12 250 48 312 269 168 0 chr15 44606805 44606924 -41088830 + MIR SINE MIR 50 188 -74 24 53 0 0 chr15 44607171 44607209 -41088545 + AT_rich Low_complexity Low_complexity 1 38 0 180 111 0 0 chr15 44607922 44607949 -41087805 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 263 136 62 111 chr15 44607991 44608072 -41087682 - L1MC4 LINE L1 0 8042 7966 924 143 22 113 chr15 44608100 44608330 -41087424 + MER20 DNA MER1_type 1 209 -10 723 173 30 0 chr15 44608354 44608487 -41087267 - L1MC4 LINE L1 -150 7892 7756 374 353 87 14 chr15 44609201 44609419 -41086335 - MIR SINE MIR -6 256 23 * 449 258 16 16 chr15 44609402 44609526 -41086228 + MIR SINE MIR 30 153 -109 194 284 190 35 chr15 44611204 44611320 -41084434 - L2 LINE L2 -3 3269 3136 180 318 80 23 chr15 44611780 44611956 -41083798 - L2 LINE L2 -557 2757 2572 778 177 0 7 chr15 44612081 44612228 -41083526 - L1MA10 LINE L1 -10 6324 6179 535 180 17 99 chr15 44612243 44612415 -41083339 - L1ME1 LINE L1 -178 5988 5831 325 217 0 66 chr15 44612479 44612585 -41083169 + MER5A DNA MER1_type 11 109 -80 183 80 0 0 chr15 44612767 44612792 -41082962 + (T)n Simple_repeat Simple_repeat 1 25 0 2087 125 0 0 chr15 44612830 44613110 -41082644 - AluSx SINE Alu -32 280 1 180 265 20 0 chr15 44614299 44614348 -41081406 - L2 LINE L2 -8 3305 3256 21 36 0 0 chr15 44614571 44614599 -41081155 + AT_rich Low_complexity Low_complexity 1 28 0 541 87 0 107 chr15 44614978 44615081 -41080673 + AluJb SINE Alu 199 290 -22 214 213 43 0 chr15 44616641 44616688 -41079066 - MIR3 SINE MIR -52 156 108 2080 152 0 0 chr15 44616893 44617195 -41078559 + AluSx SINE Alu 1 302 -10 710 178 92 7 chr15 44617597 44617749 -41078005 + MER96 DNA MER1_type? 6 170 -5 1414 168 35 39 chr15 44618040 44618325 -41077429 + AluJb SINE Alu 1 284 -28 2172 145 0 0 chr15 44618338 44618648 -41077106 + AluJb SINE Alu 1 310 -2 480 229 41 53 chr15 44619582 44619752 -41076002 - MIR SINE MIR -67 195 28 249 313 97 43 chr15 44619967 44620245 -41075509 + L2 LINE L2 2964 3256 -16 641 207 0 6 chr15 44621587 44621766 -41073988 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 445 266 8 16 chr15 44621779 44621903 -41073851 - L2 LINE L2 0 3272 3150 571 313 69 10 chr15 44622724 44623143 -41072611 + L1ME3 LINE L1 5179 5615 -549 463 219 50 0 chr15 44623232 44623351 -41072403 + MER112 DNA MER1_type 136 260 0 684 253 48 45 chr15 44623375 44623726 -41072028 + L1ME3 LINE L1 5700 5962 -208 258 200 55 0 chr15 44623995 44624050 -41071704 - L2 LINE L2 -9 3304 3247 818 276 105 22 chr15 44625241 44625556 -41070198 - L2 LINE L2 -2 3311 2971 323 252 114 73 chr15 44626990 44627113 -41068641 - MIR SINE MIR -16 246 119 1131 228 0 0 chr15 44627847 44628066 -41067688 + MER58A DNA MER1_type 5 223 -1 696 273 69 9 chr15 44628213 44628444 -41067310 + MIR SINE MIR 12 256 -6 331 58 19 0 chr15 44628667 44628719 -41067035 + MADE1 DNA Mariner 27 79 -1 315 203 0 0 chr15 44628720 44628779 -41066975 - MIR SINE MIR -101 161 103 632 260 0 26 chr15 44629195 44629349 -41066405 + MIR3 SINE MIR 11 160 -48 884 220 33 6 chr15 44629364 44629546 -41066208 + MER20 DNA MER1_type 33 219 0 206 294 265 0 chr15 44629575 44629677 -41066077 - L2 LINE L2 -1 3271 3143 656 276 118 26 chr15 44629684 44629912 -41065842 - MIR SINE MIR 0 262 14 348 327 19 11 chr15 44630295 44630480 -41065274 + MIR SINE MIR 20 206 -56 764 224 0 0 chr15 44630669 44630825 -41064929 - MIR SINE MIR 0 262 107 2150 106 6 42 chr15 44633006 44633317 -41062437 + AluSp SINE Alu 1 300 -13 2129 133 7 3 chr15 44633446 44633747 -41062007 - AluSx SINE Alu -10 302 1 359 314 123 27 chr15 44633807 44634027 -41061727 + MIR SINE MIR 16 256 -6 605 244 36 0 chr15 44634421 44634589 -41061165 + L2 LINE L2 2578 2751 -563 441 242 121 24 chr15 44634930 44635095 -41060659 + L2 LINE L2 2825 3005 -308 2093 223 54 37 chr15 44635095 44635611 -41060143 - MLT1E LTR MaLR -2 591 67 361 299 83 19 chr15 44635611 44635768 -41059986 + L2 LINE L2 2903 3069 -244 677 101 92 9 chr15 44635781 44635890 -41059864 + AluJb SINE Alu 7 124 -188 1465 204 16 26 chr15 44635901 44636205 -41059549 + AluJo SINE Alu 1 301 -11 256 282 82 75 chr15 44637063 44637382 -41058372 - L2 LINE L2 -47 3225 2905 358 279 164 7 chr15 44640967 44641107 -41054647 - MIR3 SINE MIR -7 201 40 437 258 63 31 chr15 44641369 44641528 -41054226 - MIR SINE MIR -6 256 93 449 299 90 12 chr15 44641657 44641824 -41053930 - MER5A DNA MER1_type 0 189 10 215 323 21 0 chr15 44642912 44643005 -41052749 + CT-rich Low_complexity Low_complexity 4 98 0 295 251 60 48 chr15 44643282 44643449 -41052305 - L2 LINE L2 -251 3021 2853 2104 131 29 13 chr15 44643807 44644113 -41051641 + AluJb SINE Alu 1 311 -1 381 250 0 0 chr15 44644704 44644828 -41050926 + (TCCA)n Simple_repeat Simple_repeat 4 127 0 609 209 68 18 chr15 44644876 44645039 -41050715 - MER5B DNA MER1_type -3 175 5 192 319 63 63 chr15 44645177 44645368 -41050386 - L2 LINE L2 -184 3088 2898 335 213 0 156 chr15 44646612 44646772 -41048982 + MIR SINE MIR 117 251 -11 760 261 166 12 chr15 44647068 44647603 -41048151 + L2 LINE L2 2574 3202 -111 1059 153 0 0 chr15 44647608 44647758 -41047996 + FRAM SINE Alu 1 148 -28 22 0 0 0 chr15 44647758 44647780 -41047974 + AT_rich Low_complexity Low_complexity 1 22 0 545 267 0 0 chr15 44647784 44647904 -41047850 + L2 LINE L2 3194 3313 0 276 311 19 19 chr15 44648886 44648992 -41046762 + MIR SINE MIR 118 223 -39 2193 113 31 0 chr15 44649588 44649881 -41045873 + AluSx SINE Alu 1 302 -10 411 272 88 34 chr15 44650323 44650470 -41045284 - MIR SINE MIR -42 220 66 390 219 0 0 chr15 44650468 44650550 -41045204 - MIR SINE MIR -132 130 49 * 437 227 12 78 chr15 44651590 44651725 -41044029 + MIR SINE MIR 19 141 -117 2374 93 0 0 chr15 44651725 44652014 -41043740 - AluSx SINE Alu -23 289 1 437 227 12 78 chr15 44652014 44652067 -41043687 + MIR SINE MIR 141 196 -62 489 273 19 54 chr15 44652598 44652803 -41042951 + MLT1J2 LTR MaLR 253 450 0 1801 156 33 33 chr15 44652950 44653257 -41042497 - AluJo SINE Alu 0 312 6 1413 195 71 40 chr15 44654844 44655295 -41040459 + MLT1C LTR MaLR 1 465 -2 2298 127 3 0 chr15 44655418 44655726 -41040028 + AluSx SINE Alu 1 309 -3 801 190 30 45 chr15 44655873 44656073 -41039681 + MIR SINE MIR 2 198 -64 1051 213 13 18 chr15 44656073 44656298 -41039456 - MER58A DNA MER1_type 0 224 1 269 349 9 9 chr15 44656379 44656485 -41039269 - MIR SINE MIR -51 211 106 202 303 92 17 chr15 44656759 44656850 -41038904 - L2 LINE L2 -1 3312 3209 406 294 107 59 chr15 44656850 44657037 -41038717 - MER91A DNA MER1_type 0 196 1 202 303 92 17 chr15 44657037 44657064 -41038690 - L2 LINE L2 -104 3209 3185 389 257 60 79 chr15 44658232 44658441 -41037313 + MIR SINE MIR 17 231 -31 495 173 18 55 chr15 44658809 44658919 -41036835 - MER5A DNA MER1_type -82 107 2 336 146 46 172 chr15 44659145 44659296 -41036458 + MIR SINE MIR 20 151 -111 379 232 113 60 chr15 44659461 44659612 -41036142 - MIR3 SINE MIR -30 178 20 684 291 42 5 chr15 44660324 44660537 -41035217 - MIR SINE MIR -1 261 41 414 311 78 5 chr15 44661326 44661519 -41034235 + L1ME3A LINE L1 5677 5883 -287 545 296 172 16 chr15 44661526 44661898 -41033856 - LTR16C LTR ERVL 0 491 62 226 285 24 98 chr15 44662102 44662225 -41033529 + L1ME3A LINE L1 5969 6082 -88 285 289 30 7 chr15 44662327 44662462 -41033292 - L2 LINE L2 -230 3042 2905 222 118 0 0 chr15 44662579 44662613 -41033141 + (CAG)n Simple_repeat Simple_repeat 3 36 0 292 333 0 0 chr15 44662684 44662774 -41032980 - MIR SINE MIR -13 249 160 1608 204 30 30 chr15 44662775 44663171 -41032583 - MSTD LTR MaLR 0 396 1 2108 142 0 7 chr15 44663179 44663488 -41032266 + AluJb SINE Alu 6 312 0 3743 209 191 95 chr15 44663511 44663803 -41031951 - MSTD-int LTR MaLR -14 1637 1374 2274 123 0 3 chr15 44663803 44664113 -41031641 + AluSg1 SINE Alu 1 309 0 3743 209 191 95 chr15 44664113 44664784 -41030970 - MSTD-int LTR MaLR -277 1374 769 2131 80 8 0 chr15 44664784 44665047 -41030707 - AluY SINE Alu -5 306 42 3743 209 191 95 chr15 44665047 44665576 -41030178 - MSTD-int LTR MaLR -882 769 1 713 199 0 0 chr15 44665576 44665707 -41030047 - MSTD LTR MaLR 0 396 266 2053 125 37 0 chr15 44665707 44666004 -41029750 - MER1B DNA MER1_type 0 339 32 461 136 0 12 chr15 44666001 44666132 -41029622 - MSTD LTR MaLR -210 186 1 * 435 327 13 6 chr15 44666136 44666292 -41029462 - MIR SINE MIR -104 158 2 2279 108 3 0 chr15 44667178 44667474 -41028280 + AluSx SINE Alu 1 297 -15 513 188 40 0 chr15 44668348 44668449 -41027305 + MER94 DNA DNA 23 127 -7 1199 284 40 28 chr15 44669061 44669592 -41026162 - L1ME4a LINE L1 -207 5914 5378 313 262 107 0 chr15 44669602 44669705 -41026049 - L2 LINE L2 -20 3293 3180 355 333 42 18 chr15 44669901 44670069 -41025685 - MIR SINE MIR -70 192 21 235 274 63 80 chr15 44670110 44670285 -41025469 - MER5A DNA MER1_type 0 189 18 330 314 14 86 chr15 44670928 44671083 -41024671 - MIR SINE MIR -53 209 71 2260 100 0 20 chr15 44671083 44671383 -41024371 + AluSc SINE Alu 1 294 -15 330 314 14 86 chr15 44671383 44671437 -41024317 - MIR SINE MIR -191 71 15 691 175 150 6 chr15 44671524 44671684 -41024070 + MER5A DNA MER1_type 1 183 -6 663 200 30 55 chr15 44671712 44671877 -41023877 - MER5B DNA MER1_type -16 162 2 321 275 116 16 chr15 44672243 44672385 -41023369 - MIR SINE MIR -63 145 13 458 315 35 20 chr15 44673155 44673358 -41022396 + MIR SINE MIR 34 239 -23 357 315 39 0 chr15 44673425 44673555 -41022199 + MIR SINE MIR 68 202 -60 1975 129 44 10 chr15 44674726 44675021 -41020733 - AluSq SINE Alu -8 305 1 1652 178 0 72 chr15 44675023 44675344 -41020410 - AluJb SINE Alu -14 298 1 206 315 11 33 chr15 44676305 44676397 -41019357 - L3 LINE CR1 -7 1570 1481 259 342 72 0 chr15 44676503 44676614 -41019140 - MIR3 SINE MIR 0 208 90 2596 65 0 0 chr15 44676840 44677146 -41018608 - AluY SINE Alu -5 306 1 1501 262 57 20 chr15 44677310 44677798 -41017956 - MLT1K LTR MaLR -3 585 80 190 226 19 0 chr15 44678115 44678168 -41017586 - MIR SINE MIR -77 131 78 353 324 0 0 chr15 44679133 44679281 -41016473 + (CA)n Simple_repeat Simple_repeat 1 148 0 228 285 82 18 chr15 44680356 44680471 -41015283 + MIR SINE MIR 20 145 -63 23 0 0 0 chr15 44681091 44681114 -41014640 + AT_rich Low_complexity Low_complexity 1 23 0 283 247 0 0 chr15 44681134 44681207 -41014547 - MIR SINE MIR -10 252 180 189 0 0 0 chr15 44681365 44681386 -41014368 + (A)n Simple_repeat Simple_repeat 1 21 0 298 178 0 78 chr15 44681644 44681734 -41014020 + L1MC5 LINE L1 7772 7854 -107 256 224 164 35 chr15 44682179 44682295 -41013459 - MIR SINE MIR -10 252 122 214 328 84 8 chr15 44682330 44682449 -41013305 + L2 LINE L2 3143 3270 -2 220 328 16 0 chr15 44682462 44682526 -41013228 - MIR SINE MIR -150 112 48 923 237 10 5 chr15 44682732 44682939 -41012815 - MER63A DNA MER1_type -2 208 1 507 136 67 10 chr15 44683500 44683633 -41012121 + MLT1C LTR MaLR 12 153 -314 265 375 53 18 chr15 44683710 44683993 -41011761 + L2 LINE L2 2553 2845 -469 264 270 16 107 chr15 44684213 44684352 -41011402 + MIR SINE MIR 26 159 -49 415 283 72 13 chr15 44684715 44684867 -41010887 + MIR3 SINE MIR 20 180 -28 236 167 0 0 chr15 44685663 44685705 -41010049 - Alu SINE Alu -175 127 86 1258 148 89 0 chr15 44685705 44685907 -41009847 - AluJo SINE Alu -92 220 1 404 246 94 35 chr15 44685945 44686116 -41009638 - L1ME4a LINE L1 -206 5915 5735 207 0 0 0 chr15 44686116 44686139 -41009615 + (TAA)n Simple_repeat Simple_repeat 1 23 0 395 282 73 0 chr15 44686172 44686296 -41009458 - MIR SINE MIR -40 222 90 316 285 7 69 chr15 44686454 44686598 -41009156 - MIR3 SINE MIR -67 141 7 1309 91 54 54 chr15 44687280 44687378 -41008376 - MER30 DNA MER1_type -6 224 127 2262 118 7 0 chr15 44687378 44687674 -41008080 + AluSx SINE Alu 2 299 -13 1309 91 54 54 chr15 44687674 44687796 -41007958 - MER30 DNA MER1_type -102 128 4 2432 77 0 7 chr15 44687976 44688276 -41007478 + AluY SINE Alu 1 298 -13 207 0 0 0 chr15 44688605 44688628 -41007126 + (A)n Simple_repeat Simple_repeat 1 23 0 336 297 32 26 chr15 44688958 44689028 -41006726 + MIR3 SINE MIR 3 71 -137 1853 196 0 0 chr15 44689028 44689324 -41006430 - AluJo SINE Alu -12 300 5 336 297 32 26 chr15 44689324 44689408 -41006346 + MIR3 SINE MIR 71 158 -50 420 111 0 0 chr15 44689418 44689481 -41006273 + (TG)n Simple_repeat Simple_repeat 2 64 0 270 278 0 78 chr15 44689975 44690065 -41005689 + L2 LINE L2 3189 3271 -1 1720 180 3 11 chr15 44690093 44690402 -41005352 - AluJb SINE Alu 0 307 1 337 194 65 89 chr15 44691714 44691838 -41003916 - MIR SINE MIR -62 200 80 271 276 102 10 chr15 44691929 44692027 -41003727 - MIR SINE MIR -77 131 25 301 348 14 14 chr15 44692472 44692613 -41003141 - MIR3 SINE MIR -45 163 23 1085 158 0 0 chr15 44692758 44692929 -41002825 - FAM SINE Alu -4 171 1 448 306 48 0 chr15 44693078 44693225 -41002529 - L3 LINE CR1 -19 1558 1405 320 237 86 32 chr15 44693309 44693402 -41002352 - L1MC5 LINE L1 -33 7928 7831 310 318 0 0 chr15 44693559 44693644 -41002110 - MIR3 SINE MIR -18 190 106 239 336 57 20 chr15 44694057 44694301 -41001453 - L2 LINE L2 -452 2862 2610 2312 118 0 10 chr15 44694576 44694889 -41000865 + AluSx SINE Alu 1 310 -2 480 341 73 0 chr15 44694889 44695053 -41000701 + MIR3 SINE MIR 20 195 -13 704 261 139 9 chr15 44695148 44695378 -41000376 - MIR SINE MIR -1 261 2 245 171 0 0 chr15 44696564 44696605 -40999149 + MER91 DNA MER1_type 1 41 -155 246 275 114 98 chr15 44696825 44697221 -40998533 + L2 LINE L2 2871 3272 0 * 313 293 0 57 chr15 44697202 44697308 -40998446 - L2 LINE L2 0 3272 3173 1560 181 44 24 chr15 44697318 44697611 -40998143 - AluJo SINE Alu -13 299 1 355 218 57 24 chr15 44697736 44697860 -40997894 + LTR16C LTR ERVL 187 314 -177 253 88 0 0 chr15 44697932 44697966 -40997788 + LTR16C LTR ERVL 455 488 -3 563 265 103 29 chr15 44698138 44698342 -40997412 - MIR SINE MIR -16 246 28 1638 165 60 7 chr15 44698540 44698825 -40996929 + AluJo SINE Alu 1 300 -12 293 320 78 55 chr15 44699792 44700139 -40995615 + L2 LINE L2 2827 3181 -132 * 1075 214 99 51 chr15 44700112 44700406 -40995348 - L2 LINE L2 0 3313 3006 331 211 211 35 chr15 44700420 44700534 -40995220 + L2 LINE L2 3138 3271 -1 220 353 40 7 chr15 44700545 44700695 -40995059 - L3b LINE CR1 -218 1365 1211 318 286 57 23 chr15 44700938 44701082 -40994672 + MIR SINE MIR 46 188 -72 2248 116 0 0 chr15 44701094 44701387 -40994367 + AluSx SINE Alu 11 303 -9 446 331 7 13 chr15 44701658 44701812 -40993942 - MIR3 SINE MIR -23 185 33 444 224 224 0 chr15 44701874 44702008 -40993746 + MIR SINE MIR 89 252 -10 496 214 68 8 chr15 44702292 44702409 -40993345 + MER5C DNA MER1_type 1 124 -200 277 246 0 14 chr15 44702545 44702614 -40993140 + MER5C DNA MER1_type 257 324 0 193 275 29 29 chr15 44703641 44703710 -40992044 + L3b LINE CR1 1338 1406 -177 199 313 45 0 chr15 44703913 44703980 -40991774 - MIR3 SINE MIR -46 162 93 283 315 63 31 chr15 44704988 44705115 -40990639 + MIR SINE MIR 77 207 -55 454 264 61 27 chr15 44706025 44706173 -40989581 + MIR3 SINE MIR 21 173 -35 987 175 42 60 chr15 44706214 44706431 -40989323 + MER20 DNA MER1_type 7 219 0 269 214 86 0 chr15 44706435 44706505 -40989249 + MIR SINE MIR 98 173 -89 346 273 186 19 chr15 44707101 44707300 -40988454 - L1MCa LINE L1 -1205 1582 1381 1883 166 7 0 chr15 44707317 44707601 -40988153 - AluJb SINE Alu -26 286 1 1610 165 18 64 chr15 44707631 44707958 -40987796 - AluJo SINE Alu 0 312 1 260 270 54 0 chr15 44708076 44708150 -40987604 - MIR3 SINE MIR -50 158 81 581 270 7 20 chr15 44708745 44708893 -40986861 + MER5B DNA MER1_type 33 178 0 2451 151 31 24 chr15 44709267 44709562 -40986192 + L1MB4 LINE L1 5666 5957 -223 1996 141 7 7 chr15 44709562 44709861 -40985893 + AluSg SINE Alu 1 299 -11 2232 127 7 0 chr15 44709861 44710169 -40985585 + AluSg SINE Alu 1 310 0 2451 151 31 24 chr15 44710169 44710383 -40985371 + L1MB4 LINE L1 5956 6180 0 205 337 22 0 chr15 44710613 44710705 -40985049 + MIR SINE MIR 164 257 -5 1096 122 0 6 chr15 44710927 44711083 -40984671 + AluSg/x SINE Alu 156 310 -2 2282 81 0 4 chr15 44711643 44711916 -40983838 + AluSq SINE Alu 27 298 -15 201 238 0 0 chr15 44711918 44711960 -40983794 + (CA)n Simple_repeat Simple_repeat 1 42 0 200 185 37 56 chr15 44712122 44712176 -40983578 + L2 LINE L2 3218 3270 -2 558 206 75 25 chr15 44712633 44712793 -40982961 + MIR SINE MIR 84 251 -11 2289 99 0 0 chr15 44712801 44713115 -40982639 + AluSx SINE Alu 1 314 0 2208 129 3 3 chr15 44713319 44713628 -40982126 - AluSx SINE Alu -3 309 1 450 200 0 0 chr15 44714148 44714223 -40981531 + MER81 DNA DNA 4 78 -36 204 239 0 43 chr15 44715642 44715734 -40980020 + (CGGGG)n Simple_repeat Simple_repeat 5 92 0 257 341 47 16 chr15 44716588 44716717 -40979037 + L2 LINE L2 2926 3058 -214 2021 138 20 0 chr15 44717175 44717479 -40978275 + AluSx SINE Alu 1 310 -2 354 240 21 31 chr15 44717561 44717657 -40978097 + MIR SINE MIR 46 140 -68 245 206 128 88 chr15 44717832 44717934 -40977820 - MER5A DNA MER1_type -83 106 1 290 211 233 11 chr15 44718602 44718692 -40977062 + MER5A DNA MER1_type 58 167 -22 611 284 28 17 chr15 44718891 44719067 -40976687 - MIR3 SINE MIR -4 204 27 183 80 0 0 chr15 44719068 44719093 -40976661 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1484 117 5 5 chr15 44720192 44720397 -40975357 + AluSg/x SINE Alu 96 300 -10 195 319 32 53 chr15 44720522 44720616 -40975138 - L3 LINE CR1 -140 1437 1346 2246 107 0 3 chr15 44721347 44721645 -40974109 + AluSc SINE Alu 1 297 -12 355 241 116 14 chr15 44722576 44722729 -40973025 + MIR SINE MIR 20 184 -62 189 107 0 0 chr15 44723693 44723721 -40972033 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 407 282 73 8 chr15 44725190 44725314 -40970440 + MIR SINE MIR 20 151 -57 2238 115 7 7 chr15 44725463 44725768 -40969986 + AluSx SINE Alu 1 305 -7 316 253 48 12 chr15 44727621 44727704 -40968050 + MIR SINE MIR 65 150 -112 2212 124 0 0 chr15 44727865 44728155 -40967599 + AluSx SINE Alu 1 290 -22 380 266 52 52 chr15 44728181 44728354 -40967400 + MER5A DNA MER1_type 1 173 -16 * 457 304 25 32 chr15 44728199 44728357 -40967397 - MER5A DNA MER1_type -7 182 26 243 324 0 14 chr15 44728769 44728840 -40966914 + MIR3 SINE MIR 114 183 -25 595 278 59 24 chr15 44729411 44729580 -40966174 + MIR3 SINE MIR 20 194 -14 337 297 168 7 chr15 44730116 44730271 -40965483 + MIR3 SINE MIR 25 204 -4 214 289 113 41 chr15 44731117 44731214 -40964540 + MIR SINE MIR 50 153 -109 221 242 44 121 chr15 44732340 44732431 -40963323 + MIR SINE MIR 65 148 -60 679 172 0 0 chr15 44733552 44733651 -40962103 + FLAM_A SINE Alu 1 99 -43 491 276 79 8 chr15 44733684 44733857 -40961897 + MIR SINE MIR 18 208 -54 21 36 0 0 chr15 44736854 44736882 -40958872 + AT_rich Low_complexity Low_complexity 1 28 0 260 281 31 78 chr15 44737204 44737332 -40958422 + MIR3 SINE MIR 84 205 -3 2607 52 0 13 chr15 44738016 44738325 -40957429 + AluY SINE Alu 1 305 -6 52 58 0 0 chr15 44739082 44739169 -40956585 + AT_rich Low_complexity Low_complexity 1 87 0 3464 96 41 6 chr15 44739307 44739848 -40955906 - Tigger4(Zombi) DNA MER2_type 0 2731 2172 927 135 70 0 chr15 44739854 44740010 -40955744 - Tigger4(Zombi) DNA MER2_type -2564 167 1 246 164 131 0 chr15 44739968 44740029 -40955725 + MER46A DNA MER2_type 97 165 -71 * 23 33 0 0 chr15 44741030 44741060 -40954694 + AT_rich Low_complexity Low_complexity 1 30 0 312 238 256 37 chr15 44741454 44741618 -40954136 - MIR3 SINE MIR -3 205 6 750 114 0 54 chr15 44742707 44742856 -40952898 + AluY SINE Alu 6 146 -165 228 289 51 109 chr15 44742960 44743025 -40952729 - L3 LINE CR1 -407 1170 1103 2122 85 7 52 chr15 44743025 44743330 -40952424 - AluY SINE Alu -20 291 1 228 289 51 109 chr15 44743330 44743420 -40952334 - L3 LINE CR1 -474 1103 1024 2266 154 24 24 chr15 44743509 44743861 -40951893 - MLT1B LTR MaLR -3 387 33 2483 84 7 0 chr15 44743861 44744159 -40951595 + AluSx SINE Alu 1 300 -12 2266 154 24 24 chr15 44744159 44744189 -40951565 - MLT1B LTR MaLR -356 34 5 642 303 52 26 chr15 44744389 44744620 -40951134 - MIR SINE MIR -6 256 20 935 185 0 0 chr15 44744903 44745049 -40950705 + FRAM SINE Alu 1 146 -30 2347 107 0 3 chr15 44745053 44745351 -40950403 + AluSq SINE Alu 1 297 -16 2089 128 14 3 chr15 44745558 44745848 -40949906 - AluSx SINE Alu -19 293 1 4431 249 135 52 chr15 44746260 44746587 -40949167 - HAL1 LINE L1 -22 2485 2186 1009 161 0 0 chr15 44746587 44746749 -40949005 - FAM SINE Alu -12 163 2 4431 249 135 52 chr15 44746749 44747069 -40948685 - HAL1 LINE L1 -321 2186 1894 2308 87 26 19 chr15 44747069 44747380 -40948374 - AluSp SINE Alu 0 313 1 4431 249 135 52 chr15 44747380 44747663 -40948091 - HAL1 LINE L1 -613 1894 1636 844 158 0 0 chr15 44747663 44747796 -40947958 - FLAM_C SINE Alu 0 133 1 4431 249 135 52 chr15 44747796 44749149 -40946605 - HAL1 LINE L1 -871 1636 11 211 353 15 0 chr15 44749279 44749347 -40946407 + L2 LINE L2 3245 3313 0 282 221 19 82 chr15 44751976 44752134 -40943620 + CT-rich Low_complexity Low_complexity 4 151 0 245 325 89 25 chr15 44752143 44752300 -40943454 + MIR SINE MIR 5 171 -37 392 259 44 37 chr15 44752999 44753134 -40942620 - MIR SINE MIR -3 259 124 619 230 14 0 chr15 44753788 44753927 -40941827 - MER104 DNA Tc2 -4 176 36 2057 94 36 4 chr15 44753940 44754215 -40941539 + AluSc SINE Alu 11 294 -15 800 133 63 0 chr15 44754245 44754388 -40941366 + L1MB3 LINE L1 6010 6161 -22 1000 208 56 80 chr15 44754389 44754802 -40940952 - MLT1A1 LTR MaLR 0 365 2 21 0 0 0 chr15 44754821 44754842 -40940912 + AT_rich Low_complexity Low_complexity 1 21 0 183 176 0 0 chr15 44755780 44755814 -40939940 - MIR3 SINE MIR -15 193 160 404 238 32 95 chr15 44756628 44756817 -40938937 - MER104 DNA MER2_type 0 180 4 260 225 42 14 chr15 44756885 44756956 -40938798 - L2 LINE L2 -218 3054 2982 216 239 33 54 chr15 44757440 44757532 -40938222 + L2 LINE L2 3162 3251 -21 1186 133 0 68 chr15 44757694 44757928 -40937826 - MER20 DNA MER1_type -1 218 1 530 259 119 73 chr15 44759942 44760286 -40935468 - L1ME4a LINE L1 -7 6114 5755 546 195 105 63 chr15 44760321 44760511 -40935243 + MIR SINE MIR 38 235 -27 637 214 48 0 chr15 44760513 44760658 -40935096 - L1ME4a LINE L1 -364 5757 5606 245 269 39 13 chr15 44760872 44760950 -40934804 - MIR3 SINE MIR -53 155 76 408 266 97 0 chr15 44760955 44761079 -40934675 - L2 LINE L2 0 3272 3137 999 236 206 5 chr15 44761388 44761761 -40933993 - LTR16B LTR ERVL 0 464 17 319 234 32 21 chr15 44762229 44762323 -40933431 + MIR SINE MIR 34 128 -80 913 299 119 21 chr15 44762963 44763492 -40932262 - L1ME4a LINE L1 -185 5936 5356 585 262 97 32 chr15 44763641 44763864 -40931890 + MIR SINE MIR 2 236 -26 569 178 0 0 chr15 44763898 44763999 -40931755 - MER5A DNA MER1_type -80 109 9 335 267 212 14 chr15 44764020 44764166 -40931588 + MER5B DNA MER1_type 4 178 0 631 112 79 73 chr15 44764279 44764415 -40931339 + MER33 DNA MER1_type 51 185 -2400 189 0 0 0 chr15 44764415 44764436 -40931318 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 297 0 0 0 chr15 44764435 44764468 -40931286 + (TA)n Simple_repeat Simple_repeat 2 34 0 631 112 79 73 chr15 44764436 44764468 -40931286 + MER33 DNA MER1_type 185 191 -2394 2118 143 13 0 chr15 44764468 44764768 -40930986 - AluSx SINE Alu -8 304 1 631 112 79 73 chr15 44764768 44764808 -40930946 + MER33 DNA MER1_type 191 229 -95 297 315 0 0 chr15 44766095 44766168 -40929586 + MIR3 SINE MIR 86 158 -50 335 284 34 22 chr15 44766677 44766815 -40928939 - MIR SINE MIR -31 177 67 231 328 162 25 chr15 44766857 44767061 -40928693 + MIR SINE MIR 29 260 -2 186 200 100 0 chr15 44767457 44767517 -40928237 + MIR SINE MIR 105 170 -92 285 273 73 55 chr15 44767960 44768034 -40927720 + L2 LINE L2 2830 2901 -371 881 140 206 133 chr15 44768034 44768220 -40927534 - MER44D DNA MER2_type -1882 609 438 1453 151 37 49 chr15 44768220 44768465 -40927289 - AluJo SINE Alu -21 291 50 881 140 206 133 chr15 44768465 44768511 -40927243 - MER44D DNA MER2_type -2053 438 397 2221 109 0 0 chr15 44768511 44768826 -40926928 - AluSx SINE Alu 0 315 1 881 140 206 133 chr15 44768826 44768906 -40926848 - MER44D DNA MER2_type -2094 397 2 285 273 73 55 chr15 44768906 44769051 -40926703 + L2 LINE L2 2901 3053 -219 686 226 33 106 chr15 44769473 44769603 -40926151 + MIR SINE MIR 9 147 -115 426 20 0 0 chr15 44769603 44769654 -40926100 + (TG)n Simple_repeat Simple_repeat 2 52 0 1642 164 26 11 chr15 44769660 44769928 -40925826 - AluJb SINE Alu -40 272 1 686 226 33 106 chr15 44769928 44770064 -40925690 + MIR SINE MIR 152 262 0 569 293 68 5 chr15 44771413 44771604 -40924150 + MIR SINE MIR 55 257 -5 530 243 85 26 chr15 44771647 44771836 -40923918 + MIR SINE MIR 20 219 -43 363 279 115 18 chr15 44771857 44772022 -40923732 - MIR3 SINE MIR -11 197 17 281 158 171 24 chr15 44772669 44772751 -40923003 - MIR SINE MIR -35 227 134 1902 101 51 4 chr15 44773538 44773795 -40921959 + AluSx SINE Alu 1 269 -43 343 259 45 27 chr15 44773859 44773971 -40921783 + MIR3 SINE MIR 10 123 -85 952 222 49 0 chr15 44774122 44774347 -40921407 - MIR SINE MIR -10 252 17 2325 98 10 0 chr15 44775036 44775333 -40920421 + AluSx SINE Alu 1 300 -12 263 279 80 107 chr15 44775711 44776151 -40919603 + L2 LINE L2 2842 3269 -3 2227 95 34 0 chr15 44776961 44777257 -40918497 + AluSq SINE Alu 8 313 0 221 0 0 33 chr15 44777269 44777299 -40918455 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 204 158 0 0 chr15 44777673 44777711 -40918043 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1639 141 25 104 chr15 44778771 44779097 -40916657 - AluYb8 SINE Alu -18 300 1 784 235 6 0 chr15 44779184 44779354 -40916400 - MER91B DNA MER1_type -16 174 4 316 244 35 0 chr15 44780169 44780255 -40915499 + L2 LINE L2 3225 3313 0 202 300 0 0 chr15 44780269 44780329 -40915425 - L2 LINE L2 -72 3241 3182 201 231 0 19 chr15 44780426 44780438 -40915316 - MIR3 SINE MIR -7 201 190 2508 83 0 0 chr15 44780438 44780738 -40915016 + AluSg SINE Alu 1 300 -10 201 231 0 19 chr15 44780738 44780777 -40914977 - MIR3 SINE MIR -18 190 151 290 258 0 0 chr15 44780795 44780861 -40914893 + L2 LINE L2 3248 3313 0 674 287 0 0 chr15 44781909 44782066 -40913688 + MIR3 SINE MIR 34 190 -18 186 143 29 0 chr15 44782254 44782289 -40913465 - MIR3 SINE MIR -20 188 153 261 296 93 46 chr15 44783464 44783572 -40912182 - L2 LINE L2 -42 3271 3159 221 284 64 55 chr15 44783614 44783723 -40912031 + L2 LINE L2 3155 3264 -8 244 286 60 45 chr15 44783815 44783948 -40911806 - L2 LINE L2 -9 3304 3170 4112 149 68 56 chr15 44784601 44784882 -40910872 - MER21B LTR ERV1 0 863 587 2416 90 0 10 chr15 44784882 44785194 -40910560 - AluSc SINE Alu 0 309 1 4112 149 68 56 chr15 44785194 44785682 -40910072 - MER21B LTR ERV1 -276 587 106 2404 69 3 3 chr15 44785682 44785970 -40909784 + AluSp SINE Alu 1 288 -25 207 0 0 0 chr15 44785970 44785993 -40909761 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 4112 149 68 56 chr15 44785993 44786072 -40909682 - MER21B LTR ERV1 -756 107 3 590 300 25 11 chr15 44786271 44786508 -40909246 - MIR SINE MIR -7 255 19 234 357 10 10 chr15 44786515 44786613 -40909141 + MIR SINE MIR 43 140 -68 335 289 67 0 chr15 44787223 44787327 -40908427 - MIR3 SINE MIR -21 187 77 496 284 118 51 chr15 44787830 44788221 -40907533 + LTR16A LTR ERVL 24 440 -10 342 275 129 47 chr15 44788288 44788459 -40907295 + MIR SINE MIR 78 262 0 2006 197 120 46 chr15 44788653 44789236 -40906518 - MLT1E2 LTR MaLR 0 626 1 660 253 100 16 chr15 44789536 44789785 -40905969 - LTR33A LTR ERVL 0 523 254 266 263 0 25 chr15 44790119 44790199 -40905555 + MIR3 SINE MIR 10 87 -121 222 333 111 26 chr15 44790594 44790711 -40905043 + MIR3 SINE MIR 14 140 -68 410 228 95 63 chr15 44790711 44790869 -40904885 - MER117 DNA MER1_type -5 192 30 531 239 81 12 chr15 44791065 44791267 -40904487 + MIR SINE MIR 24 236 -26 261 278 56 0 chr15 44791397 44791469 -40904285 - L3 LINE CR1 -518 1059 984 258 247 11 43 chr15 44791960 44792053 -40903701 - L2 LINE L2 -1 3312 3223 816 299 96 6 chr15 44792150 44792647 -40903107 + L2 LINE L2 2510 3052 -220 826 217 166 0 chr15 44792859 44793076 -40902678 + MIR SINE MIR 6 258 -4 184 250 0 0 chr15 44793800 44793840 -40901914 + L2 LINE L2 3224 3263 -9 248 299 15 0 chr15 44793882 44793949 -40901805 - MIR3 SINE MIR -21 187 120 271 315 79 0 chr15 44794128 44794217 -40901537 - L2 LINE L2 -16 3256 3161 2084 131 10 10 chr15 44795310 44795608 -40900146 + AluSx SINE Alu 7 304 -8 203 186 23 0 chr15 44795841 44795884 -40899870 + (CCCA)n Simple_repeat Simple_repeat 2 45 0 362 308 0 32 chr15 44796525 44796681 -40899073 - MER112 DNA MER1_type -42 218 68 353 340 139 12 chr15 44796898 44797142 -40898612 + L2 LINE L2 2809 3083 -189 223 323 4 0 chr15 44798085 44798160 -40897594 - MIR SINE MIR -87 121 45 263 310 92 0 chr15 44798312 44798454 -40897300 - MER117 DNA MER1_type -34 163 9 429 282 100 24 chr15 44798470 44798640 -40897114 + MER63A DNA MER1_type 28 210 0 372 244 0 0 chr15 44798998 44799076 -40896678 - L3 LINE CR1 -103 1474 1397 409 163 88 0 chr15 44800107 44800187 -40895567 + MIR SINE MIR 68 154 -108 507 164 37 122 chr15 44800240 44800324 -40895430 + Tigger1 DNA MER2_type 1 62 -2356 1868 107 81 0 chr15 44800324 44800596 -40895158 + AluSx SINE Alu 1 294 -18 507 164 37 122 chr15 44800596 44800700 -40895054 + Tigger1 DNA MER2_type 62 173 -2245 * 872 98 0 21 chr15 44800677 44800820 -40894934 + Tigger1 DNA MER2_type 2202 2341 -77 200 33 0 33 chr15 44802122 44802152 -40893602 + (CAGGG)n Simple_repeat Simple_repeat 2 30 0 280 302 12 0 chr15 44802184 44802270 -40893484 + L1ME4a LINE L1 5632 5718 -403 887 259 47 17 chr15 44802275 44802576 -40893178 + MER46C DNA MER2_type 28 337 -1 651 275 80 36 chr15 44802576 44802965 -40892789 + L1ME4a LINE L1 5716 6121 0 348 293 127 57 chr15 44803319 44803383 -40892371 + L3 LINE CR1 979 1037 -540 594 270 91 33 chr15 44803383 44803624 -40892130 + MIR SINE MIR 4 258 -4 348 293 127 57 chr15 44803624 44803873 -40891881 + L3 LINE CR1 1037 1314 -263 515 240 133 0 chr15 44804005 44804155 -40891599 + L3 LINE CR1 1318 1487 -90 346 359 72 11 chr15 44804216 44804481 -40891273 - MARNA DNA Mariner -132 454 174 188 182 36 55 chr15 44805716 44805771 -40889983 - L2 LINE L2 -192 3080 3027 271 303 0 0 chr15 44808227 44808303 -40887451 - MIR3 SINE MIR -16 192 117 424 338 19 0 chr15 44809769 44809923 -40885831 + MIR3 SINE MIR 50 206 -2 2058 61 79 7 chr15 44811095 44811373 -40884381 - AluSx SINE Alu -6 306 9 404 255 152 43 chr15 44811452 44811636 -40884118 + MIR SINE MIR 59 262 0 227 282 29 48 chr15 44812057 44812160 -40883594 - L2 LINE L2 -3 3269 3169 637 271 51 42 chr15 44812335 44812549 -40883205 + MIR SINE MIR 21 236 -26 380 273 83 8 chr15 44812589 44812710 -40883044 - L2 LINE L2 -2 3311 3182 674 220 6 0 chr15 44812743 44812920 -40882834 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 235 278 0 0 chr15 44812920 44812974 -40882780 + (CGAG)n Simple_repeat Simple_repeat 3 56 0 420 256 108 130 chr15 44813250 44813574 -40882180 + L2 LINE L2 2956 3272 0 1677 147 22 51 chr15 44814323 44814637 -40881117 - AluJo SINE Alu -7 305 1 625 239 40 72 chr15 44814790 44815012 -40880742 - MIR SINE MIR 0 262 48 733 231 91 45 chr15 44815182 44815425 -40880329 + MIR SINE MIR 5 258 -4 232 197 13 13 chr15 44815437 44815513 -40880241 + GA-rich Low_complexity Low_complexity 1 76 0 183 300 50 30 chr15 44815615 44815715 -40880039 - MIR SINE MIR -61 147 46 389 289 84 14 chr15 44815842 44815984 -40879770 + MIR SINE MIR 56 207 -55 251 305 34 15 chr15 44816569 44816678 -40879076 - MIR SINE MIR -60 148 39 210 289 0 26 chr15 44817142 44817218 -40878536 + GA-rich Low_complexity Low_complexity 3 76 0 645 278 26 16 chr15 44818318 44818512 -40877242 - MIR SINE MIR 0 262 67 264 345 127 13 chr15 44819778 44820077 -40875677 - L2 LINE L2 -30 3242 2910 250 325 8 50 chr15 44821251 44821371 -40874383 + MIR SINE MIR 44 158 -104 227 358 0 11 chr15 44821907 44822002 -40873752 - Charlie4 DNA MER1_type 0 1961 1868 197 328 109 23 chr15 44823410 44823538 -40872216 - MIR3 SINE MIR -17 191 53 463 179 24 6 chr15 44823892 44824059 -40871695 + GA-rich Low_complexity Low_complexity 1 169 0 390 285 14 28 chr15 44824994 44825138 -40870616 - MER103 DNA DNA -3 163 22 393 242 169 0 chr15 44825901 44826025 -40869729 + MER117 DNA MER1_type 40 184 -13 483 235 17 8 chr15 44826159 44826278 -40869476 + L2 LINE L2 3188 3307 -6 270 288 24 48 chr15 44828115 44828240 -40867514 - MIR3 SINE MIR -19 189 68 464 284 98 31 chr15 44828247 44828472 -40867282 + MIR SINE MIR 17 256 -6 381 289 26 0 chr15 44829140 44829254 -40866500 + MIR3 SINE MIR 70 186 -22 279 329 111 0 chr15 44829350 44829522 -40866232 + MIR SINE MIR 12 217 -45 294 300 69 72 chr15 44829890 44830044 -40865710 + L1ME4a LINE L1 5563 5717 -404 1621 168 26 16 chr15 44830044 44830347 -40865407 + AluJb SINE Alu 1 306 -6 294 300 69 72 chr15 44830347 44830469 -40865285 + L1ME4a LINE L1 5717 5838 -283 291 265 31 124 chr15 44830637 44830850 -40864904 + L1ME4a LINE L1 5837 6024 -97 1689 144 35 3 chr15 44830850 44831135 -40864619 - AluJb SINE Alu -7 305 12 291 265 31 124 chr15 44831135 44831178 -40864576 + L1ME4a LINE L1 6024 6069 -52 856 230 0 24 chr15 44831202 44831367 -40864387 + FRAM SINE Alu 1 152 -24 527 270 13 38 chr15 44831917 44832076 -40863678 + MIR SINE MIR 20 174 -88 217 310 56 0 chr15 44834375 44834446 -40861308 - MIR SINE MIR -74 188 114 513 0 0 0 chr15 44834530 44834587 -40861167 + (TG)n Simple_repeat Simple_repeat 1 57 0 180 0 0 0 chr15 44834586 44834606 -40861148 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 259 260 77 10 chr15 44834739 44834807 -40860947 + MIR3 SINE MIR 78 157 -51 811 200 87 16 chr15 44834807 44834992 -40860762 - MER105 DNA DNA -2 202 5 259 260 77 10 chr15 44834992 44835027 -40860727 + MIR3 SINE MIR 157 188 -20 331 221 39 13 chr15 44836005 44836082 -40859672 + MIR SINE MIR 41 119 -89 255 313 39 47 chr15 44836148 44836276 -40859478 + MIR SINE MIR 36 162 -100 268 257 46 37 chr15 44836481 44836590 -40859164 - MIR SINE MIR -77 131 22 555 247 0 58 chr15 44837432 44837606 -40858148 + MER5B DNA MER1_type 13 176 -2 336 287 139 0 chr15 44838141 44838242 -40857512 - L2 LINE L2 0 3313 3199 237 227 76 0 chr15 44838230 44838296 -40857458 - MIR3 SINE MIR -37 171 101 * 631 242 143 36 chr15 44839025 44839248 -40856506 + MIR SINE MIR 14 260 -2 390 309 22 45 chr15 44839374 44839552 -40856202 + MIR SINE MIR 76 249 -13 298 306 90 9 chr15 44839946 44840057 -40855697 - MER5C DNA MER1_type -200 124 5 229 311 131 0 chr15 44840816 44840938 -40854816 - L2 LINE L2 -221 3051 2914 282 366 49 0 chr15 44841064 44841187 -40854567 - L2 LINE L2 -543 2771 2643 242 337 27 41 chr15 44842169 44842282 -40853472 + MIR SINE MIR 49 159 -69 210 286 63 0 chr15 44842604 44842667 -40853087 + MIR SINE MIR 85 151 -57 357 24 0 0 chr15 44843893 44843935 -40851819 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 240 274 0 14 chr15 44843954 44844027 -40851727 - MIR3 SINE MIR -6 202 131 334 230 0 14 chr15 44844027 44844101 -40851653 + AluJb SINE Alu 208 280 -22 423 0 0 0 chr15 44844101 44844148 -40851606 + (GA)n Simple_repeat Simple_repeat 1 47 0 390 294 87 22 chr15 44844673 44844857 -40850897 + MIR3 SINE MIR 11 206 -2 2272 92 0 3 chr15 44846569 44846874 -40848880 + AluSc SINE Alu 1 304 -5 388 268 142 16 chr15 44848241 44848424 -40847330 - MIR3 SINE MIR 0 208 3 1230 280 102 7 chr15 44848696 44849146 -40846608 + L2 LINE L2 2172 2664 -650 226 367 34 7 chr15 44849350 44849497 -40846257 - L3 LINE CR1 -2 1575 1425 241 220 174 28 chr15 44850020 44850129 -40845625 - MIR3 SINE MIR -19 189 65 456 277 36 30 chr15 44851772 44851938 -40843816 + MER5B DNA MER1_type 9 175 -3 347 287 82 0 chr15 44852362 44852504 -40843250 - MIR SINE MIR -61 147 34 643 270 191 53 chr15 44853239 44853472 -40842282 + MLT1L LTR MaLR 38 237 -378 333 0 0 0 chr15 44853472 44853509 -40842245 + (TC)n Simple_repeat Simple_repeat 1 37 0 643 270 191 53 chr15 44853509 44853767 -40841987 + MLT1L LTR MaLR 237 597 -18 923 263 81 39 chr15 44853825 44853894 -40841860 - L2 LINE L2 0 3313 3248 378 0 0 0 chr15 44853894 44853936 -40841818 + (CA)n Simple_repeat Simple_repeat 2 43 0 923 263 81 39 chr15 44853936 44854224 -40841530 - L2 LINE L2 -65 3248 2941 399 333 82 43 chr15 44854246 44854528 -40841226 + L3 LINE CR1 574 866 -711 1765 142 0 30 chr15 44854625 44854920 -40840834 - AluJb SINE Alu -22 290 5 212 231 135 0 chr15 44855004 44855056 -40840698 - L2 LINE L2 -19 3294 3236 616 239 126 59 chr15 44855090 44855329 -40840425 + MER112 DNA MER1_type 1 255 -5 677 149 0 9 chr15 44855480 44855594 -40840160 + L1MB3 LINE L1 6067 6179 -4 1210 212 73 23 chr15 44855673 44855823 -40839931 + L1ME3 LINE L1 5796 5937 -225 239 0 32 0 chr15 44855823 44855854 -40839900 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1210 212 73 23 chr15 44855854 44856034 -40839720 + L1ME3 LINE L1 5937 6154 -8 380 305 92 29 chr15 44856547 44856721 -40839033 + L3 LINE CR1 1287 1471 -106 269 217 226 35 chr15 44857488 44857603 -40838151 - MER91C DNA MER1_type -3 137 1 588 293 14 7 chr15 44857633 44857773 -40837981 + MIR3 SINE MIR 6 146 -62 305 354 62 6 chr15 44858412 44858590 -40837164 + MIR SINE MIR 20 207 -55 243 349 0 34 chr15 44858731 44858906 -40836848 + CT-rich Low_complexity Low_complexity 5 173 0 1898 247 149 5 chr15 44859235 44860017 -40835737 + L2 LINE L2 2170 3066 -247 194 303 13 40 chr15 44860020 44860096 -40835658 + L2 LINE L2 3235 3308 -5 208 223 69 192 chr15 44860551 44860586 -40835168 - MIR SINE MIR -62 146 108 2248 68 0 10 chr15 44860586 44860918 -40834836 + AluSp SINE Alu 1 313 0 208 223 69 192 chr15 44860918 44861012 -40834742 - MIR SINE MIR -100 108 33 369 277 166 17 chr15 44861186 44861562 -40834192 + L2 LINE L2 2615 3049 -223 793 197 36 129 chr15 44861667 44861919 -40833835 + MER33 DNA MER1_type 1 212 -2373 2116 101 0 41 chr15 44861919 44862235 -40833519 + AluSx SINE Alu 1 303 -9 793 197 36 129 chr15 44862235 44862338 -40833416 + MER33 DNA MER1_type 212 323 -1 252 222 19 0 chr15 44863743 44863797 -40831957 + MIR SINE MIR 93 147 -115 482 255 74 71 chr15 44863948 44864328 -40831426 + LTR16A1 LTR ERVL 55 435 -22 1374 89 0 0 chr15 44865250 44865429 -40830325 - AluSq SINE Alu -134 179 1 472 161 12 0 chr15 44865498 44865579 -40830175 + FLAM SINE Alu 52 133 -10 26 0 0 0 chr15 44865579 44865605 -40830149 + AT_rich Low_complexity Low_complexity 1 26 0 449 179 0 0 chr15 44865618 44865702 -40830052 + AluJ/FRAM SINE Alu 225 308 -4 1953 134 3 0 chr15 44865781 44866073 -40829681 + AluSx SINE Alu 1 293 -19 2384 87 0 0 chr15 44866340 44866650 -40829104 + AluY SINE Alu 1 310 -1 1667 127 0 4 chr15 44866658 44866903 -40828851 + AluSg SINE Alu 1 244 -66 2036 113 14 0 chr15 44867129 44867422 -40828332 - AluSx SINE Alu -15 297 1 2402 44 20 0 chr15 44868702 44868996 -40826758 + AluY SINE Alu 1 300 -11 452 299 98 12 chr15 44869298 44869462 -40826292 - MIR3 SINE MIR -10 198 21 1638 173 6 35 chr15 44869799 44870112 -40825642 - AluJo SINE Alu -8 304 1 244 238 19 95 chr15 44870165 44870218 -40825536 + L1ME LINE L1 5631 5674 -447 2058 123 3 0 chr15 44870218 44870520 -40825234 + AluSg SINE Alu 1 303 -7 244 238 19 95 chr15 44870520 44870571 -40825183 + L1ME LINE L1 5674 5727 -394 2101 111 0 0 chr15 44870865 44871163 -40824591 + AluSx SINE Alu 1 298 -14 485 272 89 5 chr15 44871252 44871443 -40824311 - L1ME LINE L1 -318 5803 5597 2043 118 0 7 chr15 44871486 44871791 -40823963 + AluSx SINE Alu 1 303 -9 516 262 89 5 chr15 44871880 44872071 -40823683 - L1ME LINE L1 -318 5803 5597 2127 89 10 3 chr15 44872114 44872406 -40823348 + AluSq SINE Alu 1 294 -19 426 275 190 10 chr15 44872451 44872651 -40823103 - MIR SINE MIR -7 255 20 1511 139 34 34 chr15 44872749 44873016 -40822738 - AluJb SINE Alu -45 267 1 356 151 55 14 chr15 44873065 44873138 -40822616 + MER116 DNA Mariner 2 77 -3 2006 114 7 3 chr15 44873599 44873888 -40821866 - AluSx SINE Alu -14 298 9 1035 222 39 21 chr15 44874028 44874307 -40821447 + L1MA9 LINE L1 5991 6274 -38 2372 46 0 3 chr15 44874310 44874629 -40821125 - AluY SINE Alu 0 318 1 1565 101 5 0 chr15 44874631 44874849 -40820905 - AluSg/x SINE Alu -16 294 76 2251 67 7 3 chr15 44874954 44875254 -40820500 - AluY SINE Alu -10 301 1 1838 147 0 22 chr15 44875473 44875786 -40819968 - AluJo SINE Alu -5 307 2 1285 161 66 4 chr15 44875945 44876187 -40819567 - AluJo SINE Alu -11 301 45 1797 153 3 31 chr15 44877237 44877558 -40818196 - AluJo SINE Alu 0 312 1 1660 148 48 0 chr15 44877857 44878128 -40817626 + AluJo SINE Alu 1 284 -28 305 286 11 33 chr15 44878468 44878559 -40817195 + L2 LINE L2 3225 3313 0 1535 173 7 30 chr15 44878919 44879214 -40816540 + AluJb SINE Alu 1 288 -24 340 141 113 0 chr15 44879386 44879457 -40816297 + MER116 DNA Mariner 2 80 0 965 213 151 0 chr15 44879460 44879685 -40816069 - MIR SINE MIR -2 260 2 840 185 13 6 chr15 44880788 44880945 -40814809 + AluJb SINE Alu 118 275 -37 486 118 0 32 chr15 44880944 44881037 -40814717 + AluJ/FRAM SINE Alu 223 312 0 * 1600 150 8 8 chr15 44881061 44881328 -40814426 + AluJb SINE Alu 24 290 -22 1825 148 20 3 chr15 44881885 44882188 -40813566 + AluJb SINE Alu 1 308 -4 804 152 51 14 chr15 44882619 44882757 -40812997 - L1MD2 LINE L1 -158 6201 6059 25 0 0 0 chr15 44882921 44882946 -40812808 + AT_rich Low_complexity Low_complexity 1 25 0 2303 95 0 0 chr15 44882946 44883250 -40812504 - AluSc SINE Alu -5 304 1 1868 125 14 4 chr15 44883424 44883705 -40812049 + AluSg SINE Alu 16 299 -11 231 167 0 0 chr15 44883705 44883747 -40812007 + (TG)n Simple_repeat Simple_repeat 2 43 0 318 344 0 0 chr15 44883747 44883837 -40811917 + L1MC4 LINE L1 6614 6703 -1339 493 222 86 17 chr15 44884271 44884388 -40811366 - MIR SINE MIR -136 126 2 29 0 0 0 chr15 44885258 44885287 -40810467 + AT_rich Low_complexity Low_complexity 1 29 0 901 123 109 32 chr15 44885300 44885509 -40810245 - L1MA8 LINE L1 -10 6302 6067 2351 266 155 34 chr15 44885533 44886490 -40809264 + L2 LINE L2 1611 2451 -862 2149 115 3 0 chr15 44886490 44886795 -40808959 + AluSx SINE Alu 1 306 -6 2351 266 155 34 chr15 44886795 44887311 -40808443 + L2 LINE L2 2451 3312 -1 822 222 80 0 chr15 44887652 44887814 -40807940 + FAM SINE Alu 1 175 0 2017 136 3 0 chr15 44887920 44888230 -40807524 - AluSx SINE Alu -1 311 1 2134 120 3 0 chr15 44888738 44889046 -40806708 - AluSg SINE Alu -1 309 1 836 167 0 14 chr15 44889049 44889193 -40806561 - FLAM_C SINE Alu 0 143 2 1829 142 0 30 chr15 44889789 44890105 -40805649 + AluSx SINE Alu 1 307 0 582 296 75 39 chr15 44891250 44891438 -40804316 - L1ME4a LINE L1 -207 5914 5734 2167 84 7 13 chr15 44891438 44891737 -40804017 + AluSg SINE Alu 1 297 -13 582 296 75 39 chr15 44891737 44891936 -40803818 - L1ME4a LINE L1 -387 5734 5513 410 300 0 17 chr15 44892390 44892510 -40803244 + L2 LINE L2 3154 3271 -1 258 256 49 55 chr15 44894028 44894192 -40801562 - L1MC4a LINE L1 -1807 6001 5839 389 191 0 12 chr15 44894202 44894286 -40801468 - L1MC4a LINE L1 -2052 5756 5674 834 128 32 0 chr15 44894302 44894427 -40801327 - AluJb SINE Alu -181 131 3 1208 252 69 23 chr15 44894451 44894840 -40800914 - L1MC4a LINE L1 -2148 5660 5254 1876 144 0 0 chr15 44895068 44895360 -40800394 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr15 44895449 44895470 -40800284 + AT_rich Low_complexity Low_complexity 1 21 0 818 188 51 6 chr15 44895563 44895739 -40800015 + AluJb SINE Alu 121 304 -8 2018 120 0 17 chr15 44896532 44896831 -40798923 - AluSx SINE Alu -12 300 7 2148 118 0 10 chr15 44896870 44897183 -40798571 - AluSg SINE Alu 0 310 1 2039 75 55 0 chr15 44897431 44897701 -40798053 + AluY SINE Alu 1 283 -28 208 0 0 0 chr15 44897701 44897724 -40798030 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 1630 134 40 0 chr15 44897735 44897982 -40797772 + AluSx SINE Alu 1 257 -55 404 301 108 6 chr15 44898006 44898182 -40797572 - MIR SINE MIR -29 233 40 891 136 0 0 chr15 44898363 44898488 -40797266 + FLAM_C SINE Alu 1 125 -18 1868 107 0 4 chr15 44899638 44899881 -40795873 + AluSx SINE Alu 54 295 -17 2291 90 17 0 chr15 44899976 44900264 -40795490 + AluY SINE Alu 1 293 -18 842 156 47 80 chr15 44900487 44900699 -40795055 - MER3 DNA MER1_type -4 205 1 521 233 13 53 chr15 44900747 44900829 -40794925 - L1ME LINE L1 -449 5672 5597 2196 120 0 0 chr15 44900829 44901129 -40794625 + AluSx SINE Alu 1 300 -12 521 233 13 53 chr15 44901129 44901196 -40794558 - L1ME LINE L1 -524 5597 5529 2456 74 0 7 chr15 44901230 44901528 -40794226 + AluY SINE Alu 1 296 -15 23 0 0 0 chr15 44902048 44902071 -40793683 + AT_rich Low_complexity Low_complexity 1 23 0 2498 64 10 0 chr15 44902134 44902430 -40793324 + AluSx SINE Alu 1 299 -13 270 0 0 0 chr15 44902442 44902472 -40793282 + (TG)n Simple_repeat Simple_repeat 2 31 0 2500 66 3 0 chr15 44903405 44903710 -40792044 + AluY SINE Alu 1 306 -5 1123 75 0 0 chr15 44904206 44904339 -40791415 + AluSg1 SINE Alu 1 133 -176 2103 117 3 3 chr15 44904339 44904630 -40791124 + AluSc SINE Alu 1 291 -18 2482 63 0 20 chr15 44904913 44905215 -40790539 - AluY SINE Alu -12 299 4 1281 177 13 17 chr15 44905372 44905609 -40790145 + AluJo SINE Alu 40 275 -37 207 0 0 0 chr15 44905610 44905633 -40790121 + (CA)n Simple_repeat Simple_repeat 2 24 0 2245 97 0 0 chr15 44906228 44906507 -40789247 + AluSx SINE Alu 1 279 -33 221 0 35 0 chr15 44906509 44906538 -40789216 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 363 137 0 0 chr15 44906551 44906602 -40789152 + MER66A LTR ERV1 288 338 -140 253 265 20 31 chr15 44907575 44907673 -40788081 + AluY SINE Alu 3 99 -202 * 297 254 14 48 chr15 44907628 44907735 -40788019 - AluJ/FLAM SINE Alu -216 86 1 665 260 13 0 chr15 44907895 44908045 -40787709 + FRAM SINE Alu 1 152 -14 22 0 0 0 chr15 44908048 44908070 -40787684 + AT_rich Low_complexity Low_complexity 1 22 0 2328 84 0 14 chr15 44908183 44908480 -40787274 - AluSg SINE Alu -17 293 1 2310 108 3 0 chr15 44908480 44908785 -40786969 - AluSq SINE Alu -7 306 1 2084 133 7 3 chr15 44908911 44909205 -40786549 - AluSx SINE Alu -17 295 1 2926 10 0 0 chr15 44909795 44910106 -40785648 + AluYa5 SINE Alu 1 311 0 2435 70 10 19 chr15 44910212 44910525 -40785229 + AluSg SINE Alu 1 310 0 735 117 48 8 chr15 44910719 44910842 -40784912 + MSTB LTR MaLR 1 137 -291 2373 94 0 3 chr15 44910842 44911149 -40784605 - AluY SINE Alu -4 307 2 735 117 48 8 chr15 44911149 44911172 -40784582 + MSTB LTR MaLR 137 158 -270 2268 59 4 0 chr15 44911218 44911489 -40784265 - AluY SINE Alu -39 272 1 436 20 0 0 chr15 44911489 44911540 -40784214 - AluSq/x SINE Alu -177 136 86 1183 181 28 5 chr15 44911540 44911755 -40783999 - AluJo SINE Alu -92 220 1 1931 137 10 16 chr15 44912096 44912410 -40783344 - AluSx SINE Alu 0 312 1 2338 96 3 3 chr15 44912525 44912828 -40782926 - AluSq SINE Alu -9 304 2 1626 150 106 0 chr15 44912851 44913125 -40782629 - AluSx SINE Alu -9 303 1 23 0 0 0 chr15 44913271 44913294 -40782460 + AT_rich Low_complexity Low_complexity 1 23 0 733 102 0 0 chr15 44913300 44913398 -40782356 + AluY SINE Alu 5 102 -209 261 0 0 0 chr15 44913502 44913531 -40782223 + (TA)n Simple_repeat Simple_repeat 1 29 0 868 135 0 8 chr15 44913556 44913689 -40782065 + FLAM_C SINE Alu 1 132 -1 1024 200 0 0 chr15 44913733 44913898 -40781856 - FAM SINE Alu -10 165 1 690 168 30 109 chr15 44913933 44914020 -40781734 + L1ME LINE L1 5254 5346 -834 1666 123 83 22 chr15 44914020 44914149 -40781605 + AluSx SINE Alu 1 121 -191 2083 119 0 22 chr15 44914149 44914468 -40781286 + AluSq SINE Alu 1 312 -1 1666 123 83 22 chr15 44914468 44914615 -40781139 + AluSx SINE Alu 121 294 -18 690 168 30 109 chr15 44914615 44914789 -40780965 + L1ME LINE L1 5346 6138 -42 657 168 0 18 chr15 44914818 44914931 -40780823 + FLAM_A SINE Alu 22 132 -10 227 133 0 0 chr15 44914934 44914979 -40780775 + L1MB3 LINE L1 6138 6182 -1 1763 178 0 17 chr15 44915029 44915322 -40780432 + AluJo SINE Alu 1 288 -24 2070 195 121 40 chr15 44915339 44915509 -40780245 + L1ME3A LINE L1 5469 5624 -546 2668 51 0 0 chr15 44915509 44915820 -40779934 - AluY SINE Alu 0 311 1 2070 195 121 40 chr15 44915820 44915846 -40779908 + L1ME3A LINE L1 5624 5646 -524 1725 176 43 43 chr15 44915846 44916113 -40779641 - MER7A DNA MER2_type -2692 346 79 2189 112 3 0 chr15 44916113 44916408 -40779346 - AluSg SINE Alu -14 296 1 1725 176 43 43 chr15 44916408 44916487 -40779267 - MER7A DNA MER2_type -2958 80 2 2070 195 121 40 chr15 44916487 44916935 -40778819 + L1ME3A LINE L1 5646 6166 -4 1636 183 0 0 chr15 44916942 44917204 -40778550 + AluJo SINE Alu 6 267 -45 2425 66 0 13 chr15 44917215 44917517 -40778237 + AluY SINE Alu 1 298 -13 2087 130 14 0 chr15 44917810 44918103 -40777651 - AluSx SINE Alu -15 297 1 1884 229 209 28 chr15 44918275 44919156 -40776598 + Charlie7 DNA MER1_type 28 1102 -1510 2258 96 3 0 chr15 44919156 44919448 -40776306 + AluSq SINE Alu 1 293 -20 1884 229 209 28 chr15 44919448 44919535 -40776219 + Charlie7 DNA MER1_type 1102 1172 -1440 939 148 0 27 chr15 44919535 44919684 -40776070 - FRAM SINE Alu -13 163 19 673 187 0 43 chr15 44919739 44919878 -40775876 + FLAM_C SINE Alu 1 133 0 453 268 173 20 chr15 44919883 44920008 -40775746 + Charlie7 DNA MER1_type 1163 1267 -1345 1517 181 9 59 chr15 44920008 44920329 -40775425 + AluJo SINE Alu 1 305 -7 453 268 173 20 chr15 44920329 44920457 -40775297 + Charlie7 DNA MER1_type 1267 1455 -1157 414 319 73 26 chr15 44920458 44920731 -40775023 - L2 LINE L2 -134 3179 2894 683 180 33 0 chr15 44920736 44920858 -40774896 + FLAM_C SINE Alu 2 127 -16 2200 94 13 27 chr15 44920864 44921162 -40774592 + AluSx SINE Alu 1 294 -18 2362 94 0 3 chr15 44921390 44921687 -40774067 - AluSq SINE Alu -17 296 1 23 33 0 0 chr15 44921687 44921717 -40774037 + AT_rich Low_complexity Low_complexity 1 30 0 2492 48 7 14 chr15 44922240 44922534 -40773220 - AluY SINE Alu -19 292 1 2095 128 0 7 chr15 44923027 44923323 -40772431 - AluSx SINE Alu -18 294 1 1300 195 35 28 chr15 44923437 44923719 -40772035 - AluJo SINE Alu -2 310 27 572 106 138 0 chr15 44923719 44923813 -40771941 + HY1 scRNA scRNA 5 111 -1 2154 89 0 76 chr15 44923829 44924145 -40771609 + AluSg SINE Alu 1 292 -18 1358 180 4 4 chr15 44924158 44924402 -40771352 + AluJo SINE Alu 57 300 -12 250 146 0 0 chr15 44924403 44924444 -40771310 - AluJo SINE Alu -260 41 1 1590 201 7 3 chr15 44925036 44925335 -40770419 + AluJb SINE Alu 1 300 -12 814 80 0 35 chr15 44925442 44925555 -40770199 + AluY SINE Alu 194 302 -9 400 305 30 0 chr15 44925708 44925839 -40769915 - L2 LINE L2 0 3313 3179 2388 84 0 10 chr15 44926231 44926539 -40769215 - AluY SINE Alu -6 305 1 1856 129 36 4 chr15 44926910 44927190 -40768564 - AluJo SINE Alu -23 289 1 1244 73 0 7 chr15 44927231 44927381 -40768373 - AluSg SINE Alu -161 149 1 2460 61 3 0 chr15 44927936 44928233 -40767521 + AluY SINE Alu 1 298 -13 257 56 0 0 chr15 44928239 44928275 -40767479 + L1MA3 LINE L1 6270 6305 0 213 355 32 0 chr15 44928337 44928461 -40767293 + L2 LINE L2 1899 2026 -1288 1166 101 30 24 chr15 44928461 44928629 -40767125 + AluSg SINE Alu 18 186 -124 483 320 269 8 chr15 44928629 44929273 -40766481 + L2 LINE L2 2044 2855 -459 217 233 39 62 chr15 44929464 44929593 -40766161 + L2 LINE L2 3124 3249 -64 792 183 15 66 chr15 44929764 44929961 -40765793 - AluJo SINE Alu -2 310 124 1455 160 69 21 chr15 44930164 44930278 -40765476 + AluJb SINE Alu 2 109 -203 207 0 0 0 chr15 44930278 44930301 -40765453 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1455 160 69 21 chr15 44930301 44930474 -40765280 + AluJb SINE Alu 109 303 -9 1908 78 0 12 chr15 44931623 44931868 -40763886 - AluSg SINE Alu -16 294 53 2372 91 0 3 chr15 44931972 44932268 -40763486 + AluSx SINE Alu 1 295 -17 2083 118 4 0 chr15 44932697 44932976 -40762778 + AluSx SINE Alu 1 280 -32 282 56 0 0 chr15 44932977 44933013 -40762741 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 1882 143 49 0 chr15 44933019 44933306 -40762448 + AluJb SINE Alu 1 301 -11 754 146 211 99 chr15 44933557 44933641 -40762113 - MER58 DNA MER1_type -2183 237 164 2045 125 3 7 chr15 44933641 44933936 -40761818 + AluSx SINE Alu 1 294 -18 754 146 211 99 chr15 44933936 44934064 -40761690 - MER58 DNA MER1_type -2256 164 1 811 269 99 70 chr15 44934156 44934709 -40761045 + MLT1K LTR MaLR 18 586 -2 195 333 50 57 chr15 44934813 44934954 -40760800 + L2 LINE L2 3129 3268 -4 232 315 45 0 chr15 44935651 44935740 -40760014 + L2 LINE L2 2961 3053 -219 2191 124 0 3 chr15 44936448 44936746 -40759008 - AluSx SINE Alu -15 297 1 2301 99 7 0 chr15 44936754 44937048 -40758706 - AluSc SINE Alu -13 296 1 1427 199 7 28 chr15 44937261 44937547 -40758207 + AluJb SINE Alu 1 280 -32 2163 99 7 7 chr15 44938099 44938392 -40757362 - AluSq SINE Alu -10 303 11 528 183 0 87 chr15 44938467 44938593 -40757161 - MER58B DNA MER1_type -4 337 223 2304 102 3 3 chr15 44939075 44939378 -40756376 - AluSg SINE Alu -7 303 1 601 239 148 0 chr15 44939481 44939657 -40756097 - MIR SINE MIR -10 252 51 280 282 12 24 chr15 44939702 44939787 -40755967 + MLT1H LTR MaLR 71 154 -395 293 198 62 46 chr15 44939910 44940009 -40755745 + MLT1F LTR MaLR 453 538 -4 924 200 0 6 chr15 44940019 44940184 -40755570 + AluJb SINE Alu 138 301 -11 213 326 22 22 chr15 44940881 44940970 -40754784 + MIR3 SINE MIR 15 103 -105 228 275 83 0 chr15 44941210 44941319 -40754435 - MIR SINE MIR -16 246 129 14447 17 3 1 chr15 44941680 44944106 -40751648 - L1HS LINE L1 0 6155 3728 1871 232 91 9 chr15 44944088 44944108 -40751646 - L1ME1 LINE L1 -4 6162 6145 * 2169 83 4 7 chr15 44944108 44944385 -40751369 - AluSq SINE Alu -37 276 1 1871 232 91 9 chr15 44944385 44944925 -40750829 - L1ME1 LINE L1 -21 6145 5556 2312 104 0 7 chr15 44944955 44945262 -40750492 - AluSg SINE Alu -5 305 1 288 148 16 188 chr15 44945564 44945629 -40750125 + MER5A DNA MER1_type 1 76 -113 1955 123 26 23 chr15 44945629 44945810 -40749944 + L1MB3 LINE L1 5829 6013 -170 2419 86 0 7 chr15 44945810 44946113 -40749641 - AluSx SINE Alu -9 303 3 1955 123 26 23 chr15 44946113 44946281 -40749473 + L1MB3 LINE L1 6013 6179 -4 2209 109 14 3 chr15 44946282 44946576 -40749178 - AluSx SINE Alu -15 297 1 288 148 16 188 chr15 44946576 44946636 -40749118 + MER5A DNA MER1_type 75 106 -83 437 229 66 12 chr15 44947013 44947149 -40748605 - L1ME1 LINE L1 -1 6333 6034 1633 93 5 9 chr15 44947528 44947742 -40748012 - AluY SINE Alu -15 296 84 2188 97 20 3 chr15 44947742 44948042 -40747712 - AluSx SINE Alu -7 305 1 1482 202 129 14 chr15 44948111 44948536 -40747218 - L1ME1 LINE L1 -108 6058 5585 1924 116 3 70 chr15 44948565 44948893 -40746861 - AluSg SINE Alu -3 307 2 2152 88 3 0 chr15 44949447 44949730 -40746024 - AluSp SINE Alu -27 286 3 2197 81 3 3 chr15 44949732 44950028 -40745726 - AluSp SINE Alu -17 296 1 1625 144 45 34 chr15 44950104 44950395 -40745359 - AluJo SINE Alu -18 294 1 971 48 8 0 chr15 44950776 44950901 -40744853 + AluY SINE Alu 179 304 -7 2951 160 66 10 chr15 44950909 44951422 -40744332 + MER21A LTR ERV1 386 927 -4 912 186 12 12 chr15 44952429 44952596 -40743158 + AluJo SINE Alu 115 281 -31 1795 173 0 0 chr15 44953186 44953487 -40742267 + AluJb SINE Alu 1 301 -11 2013 115 3 39 chr15 44953624 44953800 -40741954 - AluSq SINE Alu -12 301 139 2076 123 3 0 chr15 44953800 44954093 -40741661 - AluSp SINE Alu -19 294 1 2013 115 3 39 chr15 44954093 44954228 -40741526 - AluSq SINE Alu -174 139 1 209 258 129 0 chr15 44954764 44954826 -40740928 - L2 LINE L2 0 3313 3244 2234 91 0 7 chr15 44955191 44955499 -40740255 + AluSg SINE Alu 1 306 -4 180 135 0 0 chr15 44955524 44955561 -40740193 + (A)n Simple_repeat Simple_repeat 1 37 0 1903 94 87 7 chr15 44957950 44958226 -40737528 + AluSp SINE Alu 1 298 -15 271 256 53 75 chr15 44958697 44958830 -40736924 + MIR SINE MIR 63 153 -55 910 276 0 0 chr15 44960100 44960299 -40735455 + MLT1B LTR MaLR 188 386 -4 378 0 0 0 chr15 44960576 44960618 -40735136 + (CA)n Simple_repeat Simple_repeat 2 43 0 610 217 164 0 chr15 44960686 44960875 -40734879 - MIR SINE MIR -42 220 1 374 272 0 116 chr15 44961410 44961513 -40734241 + MIR SINE MIR 32 112 -129 2572 98 29 5 chr15 44961513 44961891 -40733863 + L1PA11 LINE L1 5786 6172 -2 374 272 0 116 chr15 44961891 44961942 -40733812 + MIR SINE MIR 112 167 -74 468 163 269 28 chr15 44962834 44962975 -40732779 - MIR3 SINE MIR -1 207 33 263 247 25 49 chr15 44963468 44963549 -40732205 + MIR SINE MIR 67 145 -63 22 35 0 0 chr15 44963890 44963919 -40731835 + GC_rich Low_complexity Low_complexity 1 29 0 448 176 13 145 chr15 44964070 44964107 -40731647 + L1ME3A LINE L1 5876 5916 -254 1847 138 72 36 chr15 44964107 44964469 -40731285 + THE1C LTR MaLR 1 375 0 448 176 13 145 chr15 44964469 44964498 -40731256 + L1ME3A LINE L1 5916 5947 -223 1944 147 7 0 chr15 44964498 44964804 -40730950 + AluJb SINE Alu 1 308 -4 448 176 13 145 chr15 44964804 44964895 -40730859 + L1ME3A LINE L1 5947 6013 -157 1790 180 75 28 chr15 44964897 44965249 -40730505 + MLT2D LTR ERVL 1 374 -40 516 32 0 0 chr15 44965249 44965311 -40730443 + (CA)n Simple_repeat Simple_repeat 1 62 0 1790 180 75 28 chr15 44965311 44965346 -40730408 + MLT2D LTR ERVL 374 406 -8 458 198 30 0 chr15 44965356 44965457 -40730297 + L1ME3A LINE L1 6019 6122 -48 566 295 68 60 chr15 44965478 44965551 -40730203 + MIR SINE MIR 27 98 -164 2007 130 0 0 chr15 44965551 44965844 -40729910 - AluSg SINE Alu -17 293 1 566 295 68 60 chr15 44965844 44966004 -40729750 + MIR SINE MIR 98 262 0 2278 75 3 0 chr15 44966008 44966300 -40729454 - AluY SINE Alu -18 293 1 318 244 290 0 chr15 44966733 44966864 -40728890 - MIR3 SINE MIR -6 202 34 477 71 0 29 chr15 44967349 44967419 -40728335 + MER41A LTR ERV1 399 466 -88 186 43 0 0 chr15 44967419 44967442 -40728312 + (A)n Simple_repeat Simple_repeat 1 23 0 2201 213 77 80 chr15 44968301 44968482 -40727272 + L1MCc LINE L1 729 909 -5657 2207 99 7 0 chr15 44968482 44968786 -40726968 + AluSp SINE Alu 1 306 -7 2201 213 77 80 chr15 44968786 44969220 -40726534 + L1MCc LINE L1 909 1343 -5223 1985 140 0 0 chr15 44969220 44969513 -40726241 + AluSq SINE Alu 1 293 -20 2201 213 77 80 chr15 44969513 44969525 -40726229 + L1MCc LINE L1 1343 1354 -5212 1880 133 6 56 chr15 44969525 44969675 -40726079 + AluSq SINE Alu 1 128 -185 2292 84 3 0 chr15 44969675 44969973 -40725781 + AluSp SINE Alu 5 303 -10 1880 133 6 56 chr15 44969973 44970146 -40725608 + AluSq SINE Alu 128 308 -5 2201 213 77 80 chr15 44970146 44970473 -40725281 + L1MCc LINE L1 1354 1678 -4888 622 195 0 84 chr15 44970478 44970632 -40725122 + FLAM_C SINE Alu 2 142 -1 689 260 69 3 chr15 44970638 44970926 -40724828 + L1MCc LINE L1 1677 1983 -4958 187 288 14 41 chr15 44971052 44971125 -40724629 + MIR SINE MIR 117 187 -75 356 216 84 2 chr15 44971187 44971286 -40724468 - MIR3 SINE MIR -37 171 66 1876 130 23 10 chr15 44971758 44972058 -40723696 - AluSx SINE Alu -7 305 2 506 119 0 71 chr15 44972181 44972265 -40723489 + Tigger7 DNA MER2_type 2410 2487 0 1537 175 48 3 chr15 44972597 44972889 -40722865 + AluJo SINE Alu 1 305 -7 1295 285 93 14 chr15 44973229 44973717 -40722037 - L2 LINE L2 -2 3311 2777 266 269 0 13 chr15 44973720 44973805 -40721949 - MIR SINE MIR -61 147 73 1908 150 0 0 chr15 44973878 44974178 -40721576 + AluSg SINE Alu 6 305 -5 291 290 41 58 chr15 44974214 44974496 -40721258 + L1ME3A LINE L1 5612 5890 -280 2340 90 3 0 chr15 44974496 44974808 -40720946 + AluSp SINE Alu 1 313 0 944 145 7 7 chr15 44974876 44975028 -40720726 + AluJb SINE Alu 7 158 -154 364 164 0 0 chr15 44975028 44975089 -40720665 + AluSp/q SINE Alu 243 303 0 490 288 137 19 chr15 44975108 44975320 -40720434 + MLT1I LTR MaLR 26 262 -147 257 200 67 0 chr15 44975361 44975421 -40720333 + MLT1I LTR MaLR 340 403 -6 474 297 98 60 chr15 44975684 44975777 -40719977 - L2 LINE L2 0 3313 3225 2121 72 58 0 chr15 44975777 44976054 -40719700 + AluY SINE Alu 1 293 -18 474 297 98 60 chr15 44976054 44976158 -40719596 - L2 LINE L2 -88 3225 3126 716 188 0 8 chr15 44976158 44976291 -40719463 + FLAM_A SINE Alu 1 132 -1 474 297 98 60 chr15 44976291 44976679 -40719075 - L2 LINE L2 -187 3126 2707 228 200 146 0 chr15 44976696 44976751 -40719003 + MER69 DNA AcHobo 85 147 -2379 543 228 37 88 chr15 44977354 44977499 -40718255 - MIR SINE MIR -56 206 74 1914 108 18 0 chr15 44977499 44977776 -40717978 + AluSg SINE Alu 23 304 -6 543 228 37 88 chr15 44977776 44977845 -40717909 - MIR SINE MIR -188 74 3 2249 91 3 0 chr15 44978143 44978451 -40717303 + AluSp SINE Alu 1 309 -4 704 129 105 32 chr15 44978678 44978802 -40716952 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 44980098 44980119 -40715635 + GC_rich Low_complexity Low_complexity 1 21 0 1231 115 4 44 chr15 44981020 44981246 -40714508 - AluSg/x SINE Alu -3 307 91 1296 146 73 4 chr15 44981280 44981513 -40714241 + AluJo SINE Alu 1 249 -63 813 177 0 0 chr15 44982434 44982564 -40713190 + FLAM_C SINE Alu 1 130 -3 1366 184 3 84 chr15 44982570 44982902 -40712852 + AluJo SINE Alu 7 311 -1 323 376 12 40 chr15 44982937 44983184 -40712570 + L1M4 LINE L1 5039 5278 -868 2103 102 3 13 chr15 44983188 44983322 -40712432 + AluSg SINE Alu 1 135 -175 2049 118 10 0 chr15 44983322 44983610 -40712144 + AluSg SINE Alu 1 291 -19 2103 102 3 13 chr15 44983610 44983779 -40711975 + AluSg SINE Alu 135 301 -9 983 148 0 44 chr15 44983779 44983961 -40711793 + AluSg/x SINE Alu 134 307 -5 2218 94 7 0 chr15 44983962 44984261 -40711493 + AluSg SINE Alu 3 303 -7 2110 65 57 0 chr15 44984527 44984806 -40710948 + AluY SINE Alu 1 295 -16 22 35 0 0 chr15 44984995 44985024 -40710730 + AT_rich Low_complexity Low_complexity 1 29 0 2300 110 68 3 chr15 44985163 44985517 -40710237 + MER51B LTR ERV1 1 377 0 1787 153 3 20 chr15 44985884 44986185 -40709569 - AluJb SINE Alu -16 296 1 216 270 110 70 chr15 44986977 44987077 -40708677 - L2 LINE L2 -8 3264 3161 327 305 115 35 chr15 44987529 44987755 -40707999 - HAL1b LINE L1 -7 1341 1098 302 330 135 35 chr15 44987758 44988076 -40707678 - L2 LINE L2 -588 2726 2377 420 232 72 16 chr15 44988094 44988219 -40707535 + MER77 LTR ERV1 66 197 -408 1396 234 48 105 chr15 44988695 44989293 -40706461 + MER21B LTR ERV1 142 705 -158 225 159 0 0 chr15 44989545 44989589 -40706165 + A-rich Low_complexity Low_complexity 1 44 0 2162 94 7 0 chr15 44990277 44990605 -40705149 + AluSx SINE Alu 1 312 0 1046 170 12 0 chr15 44990616 44990787 -40704967 + FAM SINE Alu 1 173 -2 223 279 127 38 chr15 44991482 44991561 -40704193 + MIR SINE MIR 30 115 -93 195 318 152 38 chr15 44992494 44992626 -40703128 - L2 LINE L2 -1 3271 3125 309 353 127 0 chr15 44993340 44993490 -40702264 + MIR3 SINE MIR 26 194 -14 236 276 106 49 chr15 44994235 44994358 -40701396 + MIR SINE MIR 73 202 -60 454 243 100 21 chr15 44995375 44995515 -40700239 - MIR SINE MIR -108 154 4 878 184 0 12 chr15 44995603 44995766 -40699988 - FRAM SINE Alu -4 172 12 270 189 0 105 chr15 44995908 44996003 -40699751 - MIR SINE MIR -81 181 97 1571 105 146 4 chr15 44996452 44996724 -40699030 - AluSq SINE Alu 0 307 1 219 250 38 62 chr15 44997893 44997973 -40697781 + MIR SINE MIR 72 149 -113 839 165 57 6 chr15 44998010 44998168 -40697586 + MER3 DNA MER1_type 1 166 -43 456 273 77 23 chr15 44998222 44998412 -40697342 + MIR SINE MIR 6 207 -55 1078 120 6 23 chr15 44999093 44999268 -40696486 - AluSg/x SINE Alu -6 306 135 446 252 42 14 chr15 45000332 45000475 -40695279 + MIR3 SINE MIR 62 208 0 440 300 143 25 chr15 45000581 45000938 -40694816 + L1M4 LINE L1 4122 4520 -1626 483 281 50 118 chr15 45001522 45001998 -40693756 + L2 LINE L2 2825 3268 -4 810 144 8 15 chr15 45003153 45003285 -40692469 + AluJ SINE Alu 3 133 -169 21 36 0 0 chr15 45003458 45003486 -40692268 + AT_rich Low_complexity Low_complexity 1 28 0 248 106 242 0 chr15 45003502 45003568 -40692186 + L1PA16 LINE L1 6079 6160 -6 2019 112 7 0 chr15 45003580 45003849 -40691905 + AluSg SINE Alu 1 271 -39 811 169 12 58 chr15 45003849 45004021 -40691733 + AluJ SINE Alu 130 293 -19 287 235 140 7 chr15 45004192 45004328 -40691426 - L1MC4 LINE L1 -17 8025 7872 2323 89 10 3 chr15 45004402 45004706 -40691048 + AluSx SINE Alu 1 306 -6 1072 176 0 0 chr15 45004801 45004966 -40690788 - AluJb SINE Alu -8 304 140 276 219 10 96 chr15 45004970 45005053 -40690701 - L1MC4a LINE L1 -324 7484 7395 1759 136 14 41 chr15 45005053 45005348 -40690406 - AluJb SINE Alu -21 291 5 276 219 10 96 chr15 45005348 45005362 -40690392 - L1MC4a LINE L1 -413 7395 7381 2152 112 0 7 chr15 45005362 45005647 -40690107 - AluSg SINE Alu -19 291 9 276 219 10 96 chr15 45005647 45005816 -40689938 - L1MC4a LINE L1 -427 7381 7309 344 286 0 0 chr15 45006085 45006169 -40689585 - MIR SINE MIR -108 154 71 2752 39 3 0 chr15 45006174 45006484 -40689270 + AluY SINE Alu 1 311 0 2422 97 0 0 chr15 45006492 45006792 -40688962 + AluSq SINE Alu 1 300 -13 1901 134 32 0 chr15 45006916 45007193 -40688561 + AluSq SINE Alu 10 295 -18 1815 111 82 0 chr15 45007194 45007473 -40688281 + AluSc SINE Alu 1 302 -7 289 402 0 0 chr15 45007482 45007579 -40688175 - L2 LINE L2 -29 3243 3147 2017 109 3 11 chr15 45007619 45007903 -40687851 + AluSx SINE Alu 20 301 -11 843 111 0 0 chr15 45008252 45008369 -40687385 + AluY SINE Alu 194 310 -1 1352 147 0 4 chr15 45008373 45008604 -40687150 - L1M3 LINE L1 -375 5808 5579 1096 281 27 14 chr15 45008614 45009003 -40686751 + L2 LINE L2 2699 3081 -232 2415 98 0 0 chr15 45009003 45009310 -40686444 - AluSg SINE Alu -3 307 1 1096 281 27 14 chr15 45009310 45009326 -40686428 + L2 LINE L2 3081 3095 -218 1444 167 80 17 chr15 45009326 45009613 -40686141 - AluJo SINE Alu -7 305 1 1096 281 27 14 chr15 45009613 45009665 -40686089 + L2 LINE L2 3095 3163 -150 788 247 9 50 chr15 45009687 45009741 -40686013 - MIR SINE MIR -21 241 186 2305 120 0 3 chr15 45009741 45010050 -40685704 - AluSx SINE Alu -4 308 1 788 247 9 50 chr15 45010050 45010214 -40685540 - MIR SINE MIR -76 186 32 415 0 0 35 chr15 45010214 45010271 -40685483 + (TTATA)n Simple_repeat Simple_repeat 2 56 0 644 204 54 42 chr15 45010304 45010471 -40685283 + L2 LINE L2 3145 3313 0 2109 137 7 0 chr15 45011093 45011496 -40684258 - AluSx SINE Alu 0 405 1 2037 116 32 26 chr15 45011644 45011954 -40683800 - AluSx SINE Alu 0 312 1 209 227 0 0 chr15 45013521 45013565 -40682189 + T-rich Low_complexity Low_complexity 1 44 0 460 367 46 17 chr15 45014165 45014402 -40681352 + MIR SINE MIR 13 256 -6 414 0 0 0 chr15 45014494 45014540 -40681214 + (CA)n Simple_repeat Simple_repeat 2 47 0 300 331 32 24 chr15 45014728 45014852 -40680902 + L2 LINE L2 3182 3306 -7 214 277 8 118 chr15 45014869 45014988 -40680766 + L2 LINE L2 3203 3308 -5 2452 75 0 10 chr15 45015483 45015789 -40679965 - AluSq SINE Alu -10 303 1 1542 177 71 17 chr15 45016136 45016430 -40679324 + AluJo SINE Alu 1 310 -2 1738 159 45 3 chr15 45016574 45016863 -40678891 - AluJb SINE Alu -11 301 1 336 267 148 51 chr15 45018355 45018531 -40677223 - L1ME4a LINE L1 -1 6120 5928 648 271 82 0 chr15 45018546 45018762 -40676992 - L1M1 LINE L1 -359 5762 5585 539 257 153 20 chr15 45018835 45019037 -40676717 + MIR SINE MIR 7 235 -27 2381 101 48 28 chr15 45019065 45019422 -40676332 - THE1B LTR MaLR 0 364 1 2406 84 0 3 chr15 45019523 45019821 -40675933 - AluSc SINE Alu -12 297 1 365 311 85 96 chr15 45019919 45020366 -40675388 + L2 LINE L2 2824 3265 -7 314 230 115 46 chr15 45020872 45020959 -40674795 + L2 LINE L2 3221 3313 0 505 354 47 71 chr15 45021016 45021355 -40674399 - L2 LINE L2 -10 3262 2932 488 275 50 0 chr15 45021371 45021491 -40674263 - L2 LINE L2 0 3313 3188 285 196 0 0 chr15 45021859 45021910 -40673844 + L2 LINE L2 3217 3267 -5 257 318 211 29 chr15 45022141 45022421 -40673333 - L2 LINE L2 0 3272 2942 2354 99 10 0 chr15 45022440 45022744 -40673010 + AluSp SINE Alu 1 307 -6 1759 146 3 54 chr15 45022915 45023209 -40672545 + AluJo SINE Alu 1 279 -33 282 56 0 0 chr15 45023223 45023259 -40672495 + (CA)n Simple_repeat Simple_repeat 2 37 0 222 105 0 0 chr15 45023267 45023305 -40672449 + (TA)n Simple_repeat Simple_repeat 1 38 0 625 264 115 0 chr15 45024807 45024989 -40670765 + MIR SINE MIR 1 203 -59 294 245 28 66 chr15 45025526 45025632 -40670122 - MIR3 SINE MIR -92 116 15 192 77 0 0 chr15 45025633 45025659 -40670095 + (T)n Simple_repeat Simple_repeat 1 26 0 525 251 180 0 chr15 45026391 45026574 -40669180 - MIR SINE MIR -2 260 45 335 307 39 16 chr15 45026601 45026728 -40669026 - MIR3 SINE MIR -21 187 58 294 143 48 0 chr15 45026736 45026799 -40668955 + MER96 DNA MER1_type? 5 70 -105 191 123 0 158 chr15 45027771 45027828 -40667926 + MIR SINE MIR 88 135 -73 261 318 6 46 chr15 45028091 45028264 -40667490 + GA-rich Low_complexity Low_complexity 3 168 0 279 279 16 25 chr15 45028352 45028474 -40667280 + GA-rich Low_complexity Low_complexity 3 123 0 186 103 0 0 chr15 45028505 45028534 -40667220 + (CTCG)n Simple_repeat Simple_repeat 2 30 0 23 86 0 0 chr15 45030021 45030079 -40665675 + GC_rich Low_complexity Low_complexity 1 58 0 372 261 97 30 chr15 45030459 45030593 -40665161 - MIR3 SINE MIR -60 148 6 2260 110 17 0 chr15 45031348 45031649 -40664105 - AluSx SINE Alu -6 306 1 543 230 0 0 chr15 45031721 45031834 -40663920 - L2 LINE L2 -10 3303 3191 842 150 100 56 chr15 45032398 45032578 -40663176 - MER5A DNA MER1_type -1 188 1 566 250 19 6 chr15 45033906 45034062 -40661692 - MLT1L LTR MaLR -21 594 437 484 248 22 36 chr15 45034139 45034276 -40661478 - MLT1L LTR MaLR -337 278 144 330 60 0 0 chr15 45034275 45034325 -40661429 - AluSp SINE Alu -3 300 251 * 1505 84 11 0 chr15 45034330 45034520 -40661234 - AluSp SINE Alu -121 192 1 985 169 13 0 chr15 45034526 45034680 -40661074 - FRAM SINE Alu -10 156 1 186 167 48 0 chr15 45034833 45034875 -40660879 + MIR SINE MIR 104 147 -115 196 71 0 0 chr15 45035111 45035139 -40660615 - L2 LINE L2 -217 3055 3028 1700 157 3 34 chr15 45035459 45035753 -40660001 - AluJo SINE Alu -26 286 2 311 330 48 37 chr15 45035779 45035967 -40659787 + L2 LINE L2 2310 2499 -815 25 0 0 0 chr15 45035985 45036010 -40659744 + AT_rich Low_complexity Low_complexity 1 25 0 1942 136 14 3 chr15 45036010 45036297 -40659457 - AluSx SINE Alu -22 290 1 1699 173 10 17 chr15 45036630 45036930 -40658824 - AluJo SINE Alu -14 298 1 252 255 121 50 chr15 45037311 45037452 -40658302 + L2 LINE L2 3163 3313 0 344 361 58 7 chr15 45037526 45037749 -40658005 - MIR SINE MIR -7 255 21 231 305 212 0 chr15 45038139 45038257 -40657497 - MIR SINE MIR -37 225 83 300 316 34 8 chr15 45039059 45039176 -40656578 - MIR3 SINE MIR -29 179 60 189 356 34 17 chr15 45039624 45039742 -40656012 + MIR3 SINE MIR 45 164 -44 380 54 0 18 chr15 45039750 45039806 -40655948 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1936 178 3 10 chr15 45039838 45040152 -40655602 - AluJb SINE Alu 0 312 1 630 262 23 75 chr15 45041520 45041734 -40654020 + MIR SINE MIR 49 251 -11 212 238 0 0 chr15 45042196 45042238 -40653516 + GA-rich Low_complexity Low_complexity 6 47 0 455 175 12 0 chr15 45043161 45043241 -40652513 + MIR SINE MIR 32 112 -150 * 910 278 35 43 chr15 45043238 45043583 -40652171 - L2 LINE L2 -1 3312 2971 578 224 16 8 chr15 45043591 45043716 -40652038 + MIR SINE MIR 116 241 -21 441 264 32 8 chr15 45044596 45044721 -40651033 - MIR SINE MIR -51 211 84 667 313 109 35 chr15 45045839 45046396 -40649358 + L2 LINE L2 2652 3261 -11 1805 186 3 3 chr15 45046760 45047056 -40648698 - AluJo SINE Alu -16 296 1 188 326 163 0 chr15 45047142 45047234 -40648520 + L3b LINE CR1 1342 1448 -135 829 242 41 84 chr15 45047933 45048078 -40647676 - MLT1L LTR MaLR -130 485 335 1616 103 194 0 chr15 45048078 45048331 -40647423 + AluSx SINE Alu 1 302 0 829 242 41 84 chr15 45048331 45048553 -40647201 - MLT1L LTR MaLR -280 335 134 353 225 0 45 chr15 45048651 45048740 -40647014 + MIR SINE MIR 76 160 -102 2111 139 0 0 chr15 45048743 45049037 -40646717 + AluSx SINE Alu 1 294 -18 1264 84 0 0 chr15 45049140 45049294 -40646460 - AluSq SINE Alu -159 154 1 2218 112 0 7 chr15 45049455 45049742 -40646012 - AluJo SINE Alu -25 287 3 2556 69 3 0 chr15 45049797 45050103 -40645651 - AluY SINE Alu -4 307 1 2854 151 80 7 chr15 45050555 45051104 -40644650 + L1MB3 LINE L1 5593 6181 -2 278 175 79 0 chr15 45051188 45051251 -40644503 - L2 LINE L2 -212 3060 2993 1589 162 30 17 chr15 45051521 45051818 -40643936 - AluJo SINE Alu -5 307 7 1939 135 0 0 chr15 45052332 45052641 -40643113 + AluSx SINE Alu 1 309 0 2706 150 18 55 chr15 45053331 45053832 -40641922 - L1MB7 LINE L1 -5 6179 5700 1790 137 23 7 chr15 45053832 45054139 -40641615 - AluSx SINE Alu 0 312 1 2706 150 18 55 chr15 45054139 45054202 -40641552 - L1MB7 LINE L1 -484 5700 5636 336 305 92 37 chr15 45054259 45054351 -40641403 + L2 LINE L2 2584 2670 -644 1917 120 7 10 chr15 45054351 45054643 -40641111 - AluSq SINE Alu -14 299 9 336 305 92 37 chr15 45054643 45054714 -40641040 + L2 LINE L2 2670 2756 -558 421 303 109 41 chr15 45054736 45055102 -40640652 + L2 LINE L2 2877 3267 -5 248 343 15 0 chr15 45055636 45055703 -40640051 + L3 LINE CR1 1508 1575 -2 1863 156 3 0 chr15 45055707 45056015 -40639739 - AluSq SINE Alu -4 309 1 816 96 16 0 chr15 45056344 45056469 -40639285 + L1MA8 LINE L1 6145 6271 -20 756 156 25 8 chr15 45056478 45056600 -40639154 - FLAM_C SINE Alu -18 125 2 2209 91 0 23 chr15 45057091 45057400 -40638354 + AluSg SINE Alu 1 302 -8 188 75 0 75 chr15 45060134 45060174 -40635580 + (CCCCCG)n Simple_repeat Simple_repeat 4 40 0 518 133 104 118 chr15 45060826 45060961 -40634793 - FLAM_C SINE Alu 0 133 1 1326 126 148 72 chr15 45061178 45061455 -40634299 - AluJo SINE Alu -4 298 1 462 306 94 0 chr15 45061568 45061728 -40634026 - MIR SINE MIR -51 211 37 279 0 0 0 chr15 45062527 45062558 -40633196 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 637 282 158 55 chr15 45062609 45062667 -40633087 - MLT1I LTR MaLR -7 402 351 2408 73 0 0 chr15 45062667 45062969 -40632785 + AluSp SINE Alu 1 302 -11 637 282 158 55 chr15 45062969 45063272 -40632482 - MLT1I LTR MaLR -58 351 4 1269 216 90 43 chr15 45063519 45063858 -40631896 + MLT1J1 LTR MaLR 1 351 -99 1973 110 34 3 chr15 45063858 45064150 -40631604 - AluSx SINE Alu -11 301 1 1269 216 90 43 chr15 45064150 45064183 -40631571 + MLT1J1 LTR MaLR 351 381 -69 1200 135 0 0 chr15 45064331 45064509 -40631245 - AluSg/x SINE Alu 0 312 135 342 297 189 11 chr15 45065273 45065448 -40630306 - MIR SINE MIR 0 262 57 274 23 23 23 chr15 45065449 45065493 -40630261 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 720 129 9 17 chr15 45065493 45065609 -40630145 - AluJo SINE Alu -176 136 22 200 268 0 0 chr15 45065609 45065650 -40630104 - MIR SINE MIR -194 68 28 223 74 0 0 chr15 45066300 45066327 -40629427 + (T)n Simple_repeat Simple_repeat 1 27 0 2376 38 3 3 chr15 45066733 45067025 -40628729 - AluY SINE Alu -19 292 1 1529 175 8 0 chr15 45067218 45067469 -40628285 - AluSx SINE Alu -59 253 1 25 0 0 0 chr15 45067470 45067495 -40628259 + AT_rich Low_complexity Low_complexity 1 25 0 2252 189 114 58 chr15 45067620 45067693 -40628061 - MLT1E3 LTR MaLR 0 624 557 1547 171 9 40 chr15 45067693 45068015 -40627739 - AluJb SINE Alu 0 312 1 2252 189 114 58 chr15 45068015 45068530 -40627224 - MLT1E3 LTR MaLR -67 557 3 1930 152 10 0 chr15 45068633 45068935 -40626819 + AluSx SINE Alu 1 305 -7 2128 113 0 10 chr15 45070193 45070502 -40625252 + AluSq SINE Alu 3 308 -5 1148 158 0 15 chr15 45070507 45070709 -40625045 + AluJb SINE Alu 113 311 -1 200 100 25 0 chr15 45070798 45070838 -40624916 + (TA)n Simple_repeat Simple_repeat 1 41 0 905 223 229 16 chr15 45070856 45071175 -40624579 - MLT1I LTR MaLR -4 405 19 361 325 107 12 chr15 45071319 45071488 -40624266 + L1MC4a LINE L1 5792 5976 -1832 1071 234 138 47 chr15 45071638 45072066 -40623688 - MLT1C LTR MaLR 0 467 1 1857 139 10 3 chr15 45072137 45072447 -40623307 + AluSx SINE Alu 1 312 0 402 228 149 76 chr15 45072842 45073176 -40622578 + Charlie8 DNA MER1_type 1 1427 -990 233 265 0 0 chr15 45073861 45073910 -40621844 - L2 LINE L2 -10 3303 3255 234 91 0 0 chr15 45074547 45074580 -40621174 + (CAG)n Simple_repeat Simple_repeat 3 35 0 832 147 7 0 chr15 45074742 45074878 -40620876 - AluJb SINE Alu -66 246 110 21 0 0 0 chr15 45075861 45075882 -40619872 + AT_rich Low_complexity Low_complexity 1 21 0 1950 129 3 10 chr15 45076334 45076502 -40619252 - AluJb SINE Alu -11 301 134 2301 94 0 0 chr15 45076502 45076810 -40618944 - AluSg SINE Alu -2 308 1 1950 129 3 10 chr15 45076810 45076944 -40618810 - AluJb SINE Alu -178 134 1 362 287 37 64 chr15 45077410 45077595 -40618159 - MIR3 SINE MIR -63 145 8 256 339 85 42 chr15 45077639 45077804 -40617950 - MIR SINE MIR -71 191 20 821 279 20 0 chr15 45077840 45078044 -40617710 + L2 LINE L2 2422 2629 -685 718 236 125 35 chr15 45078111 45078500 -40617254 + MLT1H1 LTR MaLR 122 555 0 2025 97 42 76 chr15 45078560 45078606 -40617148 - L1MB2 LINE L1 -7 6164 6118 1014 217 0 0 chr15 45078606 45078781 -40616973 - FAM SINE Alu 0 175 1 2025 97 42 76 chr15 45078781 45078793 -40616961 - L1MB2 LINE L1 -53 6118 6107 1585 144 99 0 chr15 45078793 45079077 -40616677 - AluSx SINE Alu 0 312 1 2025 97 42 76 chr15 45079077 45079365 -40616389 - L1MB2 LINE L1 -64 6107 5829 2154 110 0 7 chr15 45079365 45079675 -40616079 - AluSx SINE Alu -3 309 2 2025 97 42 76 chr15 45079675 45079709 -40616045 - L1MB2 LINE L1 -342 5829 5795 733 80 0 0 chr15 45079710 45079810 -40615944 + AluY SINE Alu 2 101 -217 3068 128 18 73 chr15 45129842 45130021 -40565733 - Tigger3b DNA MER2_type -2457 571 384 1862 107 110 7 chr15 45130021 45130293 -40565461 - AluSc SINE Alu -9 300 1 3068 128 18 73 chr15 45130293 45130515 -40565239 - Tigger3b DNA MER2_type -2644 384 211 1567 158 15 40 chr15 45130515 45130787 -40564967 - AluJo SINE Alu -19 293 29 3068 128 18 73 chr15 45130787 45130988 -40564766 - Tigger3b DNA MER2_type -2817 211 1 467 279 134 40 chr15 45131343 45131611 -40564143 - L1M4 LINE L1 -659 5462 5200 2381 100 3 3 chr15 45131629 45131940 -40563814 - AluSp SINE Alu -2 311 1 603 142 8 14 chr15 45131979 45132093 -40563661 + AluJ SINE Alu 12 125 -187 180 0 0 0 chr15 45132093 45132113 -40563641 + (TA)n Simple_repeat Simple_repeat 2 21 0 603 142 8 14 chr15 45132113 45132246 -40563508 + AluJ SINE Alu 125 307 -5 4169 129 2 3 chr15 45132424 45133058 -40562696 - MER41B LTR ERV1 0 635 3 216 0 0 0 chr15 45133220 45133244 -40562510 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1600 96 0 5 chr15 45133246 45133445 -40562309 - AluSg/x SINE Alu -31 279 82 565 241 155 35 chr15 45133464 45133696 -40562058 - MIR SINE MIR 0 262 3 265 349 94 5 chr15 45133766 45133958 -40561796 - MIR SINE MIR -6 256 48 487 255 38 22 chr15 45134011 45134195 -40561559 - L1ME LINE L1 -402 5719 5533 742 262 31 90 chr15 45134489 45134562 -40561192 + Charlie8 DNA MER1_type 206 282 -2135 2472 77 0 10 chr15 45134562 45134873 -40560881 - AluY SINE Alu -3 308 1 742 262 31 90 chr15 45134873 45135154 -40560600 + Charlie8 DNA MER1_type 282 539 -1878 341 231 37 0 chr15 45135916 45136024 -40559730 - L1ME3 LINE L1 -29 6133 6022 5060 44 9 6 chr15 45136030 45136683 -40559071 + L1PA5 LINE L1 5500 6154 0 293 119 0 0 chr15 45136794 45136836 -40558918 + Alu SINE Alu 238 279 -23 297 0 0 0 chr15 45136838 45136871 -40558883 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 183 216 118 0 chr15 45136920 45136971 -40558783 - L2 LINE L2 -69 3244 3188 253 281 0 0 chr15 45136987 45137051 -40558703 + MIR SINE MIR 118 181 -81 414 297 47 8 chr15 45137478 45137606 -40558148 - MIR SINE MIR -70 192 60 263 256 96 48 chr15 45137692 45137761 -40557993 - MIR SINE MIR -18 244 180 2404 103 0 6 chr15 45137761 45138073 -40557681 + AluSx SINE Alu 1 310 -2 263 256 96 48 chr15 45138073 45138128 -40557626 - MIR SINE MIR -82 180 114 300 167 0 0 chr15 45138367 45138421 -40557333 - L1ME3A LINE L1 -48 6122 6069 290 185 15 0 chr15 45138634 45138699 -40557055 - MER5A DNA MER1_type -92 97 32 435 191 27 27 chr15 45138708 45138818 -40556936 + MER5A DNA MER1_type 7 116 -73 * 445 263 88 7 chr15 45138800 45138937 -40556817 - MER5B DNA MER1_type -24 154 7 2339 75 7 0 chr15 45139188 45139468 -40556286 - AluY SINE Alu -29 282 1 2368 112 0 6 chr15 45139470 45139782 -40555972 - AluSx SINE Alu -2 310 1 547 306 78 0 chr15 45140213 45140432 -40555322 - MIR SINE MIR -14 248 13 1805 148 57 48 chr15 45140574 45140620 -40555134 - THE1C LTR MaLR 0 375 331 2579 55 0 26 chr15 45140620 45140931 -40554823 + AluY SINE Alu 1 303 -8 1805 148 57 48 chr15 45140931 45141256 -40554498 - THE1C LTR MaLR -44 331 1 360 311 57 28 chr15 45141566 45141743 -40554011 - MIR3 SINE MIR -14 194 13 366 260 39 8 chr15 45141911 45142038 -40553716 - MIR SINE MIR -61 147 17 1046 184 115 115 chr15 45142393 45142758 -40552996 - MLT1A1 LTR MaLR 0 365 1 731 225 209 36 chr15 45143668 45143917 -40551837 - MER115 DNA AcHobo -5 688 397 347 204 68 30 chr15 45143929 45144061 -40551693 - MER115 DNA AcHobo -463 230 94 406 295 24 8 chr15 45144082 45144243 -40551511 - MIR SINE MIR -19 189 27 199 343 43 7 chr15 45144396 45144536 -40551218 - L2 LINE L2 -213 3059 2915 441 0 0 0 chr15 45145488 45145537 -40550217 + (TG)n Simple_repeat Simple_repeat 2 50 0 316 284 90 15 chr15 45146445 45146579 -40549175 + MIR SINE MIR 61 204 -58 31 76 0 0 chr15 45146663 45146729 -40549025 + AT_rich Low_complexity Low_complexity 1 66 0 496 246 18 0 chr15 45147749 45147859 -40547895 - MER81 DNA DNA 0 114 3 405 261 34 0 chr15 45147860 45147979 -40547775 + L2 LINE L2 3149 3271 -1 462 261 223 0 chr15 45147993 45148150 -40547604 - MIR SINE MIR -15 247 56 649 198 28 51 chr15 45148597 45148859 -40546895 + MIR SINE MIR 32 259 -3 309 300 100 38 chr15 45149226 45149386 -40546368 - L1ME4a LINE L1 -1 6120 5951 284 224 0 26 chr15 45150030 45150106 -40545648 - MIR SINE MIR -117 91 18 323 230 11 23 chr15 45150285 45150372 -40545382 - MIR SINE MIR -111 151 66 487 228 7 40 chr15 45150464 45150644 -40545110 + MIR SINE MIR 16 186 -63 2304 110 3 0 chr15 45151417 45151718 -40544036 - AluSx SINE Alu -10 302 1 514 292 38 38 chr15 45151919 45152135 -40543619 + MIR SINE MIR 19 233 -29 21 36 0 0 chr15 45152196 45152224 -40543530 + AT_rich Low_complexity Low_complexity 1 28 0 1765 161 24 7 chr15 45152319 45152610 -40543144 - AluSx SINE Alu -16 296 1 2172 141 16 0 chr15 45153323 45153627 -40542127 + AluSx SINE Alu 1 309 -3 942 254 15 11 chr15 45153699 45153959 -40541795 + MIR SINE MIR 2 262 0 216 186 80 23 chr15 45154340 45154424 -40541330 - MIR SINE MIR -61 147 53 357 250 88 44 chr15 45154561 45154721 -40541033 - MIR3 SINE MIR -27 181 15 348 217 96 31 chr15 45155118 45155257 -40540497 + MIR SINE MIR 29 166 -66 1683 166 61 14 chr15 45155321 45155616 -40540138 + AluJb SINE Alu 1 309 -3 388 238 20 137 chr15 45155807 45156106 -40539648 - L1ME4a LINE L1 -48 6073 5810 400 289 58 0 chr15 45156638 45156742 -40539012 + L2 LINE L2 3204 3313 0 23 33 0 0 chr15 45157502 45157532 -40538222 + AT_rich Low_complexity Low_complexity 1 30 0 1830 175 10 3 chr15 45157541 45157838 -40537916 - AluJo SINE Alu -13 299 1 2380 95 0 0 chr15 45158126 45158420 -40537334 + AluSc SINE Alu 1 294 -15 2314 92 17 0 chr15 45159439 45159734 -40536020 + AluSx SINE Alu 2 301 -11 2633 57 0 0 chr15 45160520 45160820 -40534934 + AluY SINE Alu 1 300 -11 2273 112 3 13 chr15 45160921 45161057 -40534697 + AluSq SINE Alu 1 137 -176 2353 86 7 3 chr15 45161057 45161358 -40534396 + AluSg SINE Alu 1 302 -8 2273 112 3 13 chr15 45161358 45161526 -40534228 + AluSq SINE Alu 137 302 -11 688 291 84 0 chr15 45161595 45161894 -40533860 + L1MC4a LINE L1 5585 5908 -1900 294 151 209 23 chr15 45162267 45162353 -40533401 + Charlie5 DNA MER1_type 2 103 -2509 1640 102 5 0 chr15 45162402 45162617 -40533137 + AluSg/x SINE Alu 94 309 -1 3953 152 97 41 chr15 45162617 45163354 -40532400 + L1MB2 LINE L1 5044 5855 -316 2333 104 0 0 chr15 45163354 45163652 -40532102 - AluSx SINE Alu -14 298 1 3953 152 97 41 chr15 45163652 45163988 -40531766 + L1MB2 LINE L1 5855 6171 0 791 273 95 14 chr15 45164002 45164323 -40531431 + MLT1L LTR MaLR 236 615 0 646 235 22 0 chr15 45165579 45165715 -40530039 + MER5A DNA MER1_type 1 139 -50 2309 127 0 0 chr15 45165732 45166040 -40529714 - AluSx SINE Alu -4 308 1 685 154 6 130 chr15 45166065 45166227 -40529527 - FLAM_A SINE Alu 0 142 1 41 47 4 0 chr15 45166525 45166624 -40529130 + GC_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr15 45166713 45166735 -40529019 + GC_rich Low_complexity Low_complexity 1 22 0 408 206 61 30 chr15 45167093 45167224 -40528530 - L1ME3A LINE L1 -38 6132 5998 386 186 48 149 chr15 45167335 45167523 -40528231 - MIR SINE MIR 0 262 94 1969 107 63 27 chr15 45167761 45168061 -40527693 - AluSx SINE Alu -1 311 1 2148 116 3 16 chr15 45168072 45168375 -40527379 - AluSx SINE Alu -13 299 1 464 169 68 51 chr15 45168375 45168493 -40527261 - MIR SINE MIR -111 151 32 341 239 0 0 chr15 45169653 45169720 -40526034 + L2 LINE L2 3246 3312 -1 552 235 86 25 chr15 45169757 45169919 -40525835 - MIR SINE MIR -43 219 48 1442 243 102 44 chr15 45170446 45171218 -40524536 - L2 LINE L2 -1 3312 2504 271 267 208 0 chr15 45171286 45171387 -40524367 + MIR SINE MIR 141 262 0 241 260 52 13 chr15 45171414 45171509 -40524245 + MIR SINE MIR 60 157 -51 355 209 30 0 chr15 45171593 45171660 -40524094 + MIR SINE MIR 155 223 -39 222 37 0 0 chr15 45171734 45171761 -40523993 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2148 106 3 3 chr15 45171962 45172279 -40523475 - AluSq SINE Alu 0 317 1 203 164 0 115 chr15 45172574 45172635 -40523119 - L2 LINE L2 -8 3264 3211 228 282 141 48 chr15 45172702 45172966 -40522788 + L2 LINE L2 2685 2976 -337 268 227 27 27 chr15 45173171 45173246 -40522508 - L1ME LINE L1 -517 5604 5530 248 313 40 0 chr15 45173243 45173342 -40522412 + L1MC/D LINE L1 5602 5704 -2104 * 2503 86 0 0 chr15 45173523 45173826 -40521928 + AluSq SINE Alu 1 303 -10 881 159 8 0 chr15 45174235 45174367 -40521387 + FAM SINE Alu 24 156 -29 186 43 0 0 chr15 45174367 45174390 -40521364 + (CA)n Simple_repeat Simple_repeat 1 23 0 35 24 0 0 chr15 45174395 45174437 -40521317 + AT_rich Low_complexity Low_complexity 1 42 0 766 215 82 35 chr15 45174795 45175051 -40520703 + ORSL DNA AcHobo 8 275 0 261 295 50 50 chr15 45175110 45175249 -40520505 + MIR3 SINE MIR 10 148 -60 652 194 11 89 chr15 45175511 45175691 -40520063 + MER5B DNA MER1_type 1 166 -12 2286 98 0 7 chr15 45176173 45176470 -40519284 + AluSg SINE Alu 1 295 -15 2122 129 0 0 chr15 45176552 45176846 -40518908 + AluSx SINE Alu 1 294 -18 956 270 69 36 chr15 45177138 45177527 -40518227 + L2 LINE L2 310 711 -2603 2437 103 0 0 chr15 45178868 45179179 -40516575 + AluSx SINE Alu 1 311 -1 2240 108 3 0 chr15 45179336 45179631 -40516123 - AluSq SINE Alu -17 296 1 1254 227 115 9 chr15 45179773 45180103 -40515651 + MLT1A1 LTR MaLR 1 365 0 241 280 92 80 chr15 45183207 45183457 -40512297 + L2 LINE L2 2826 3078 -194 1048 82 11 28 chr15 45183471 45183653 -40512101 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 859 171 79 0 chr15 45183663 45183815 -40511939 - AluJo SINE Alu -66 246 83 180 351 143 7 chr15 45183841 45183995 -40511759 + L2 LINE L2 3090 3264 -8 1757 89 67 133 chr15 45185130 45185263 -40510491 + AluSx SINE Alu 2 142 -170 2301 94 3 0 chr15 45185263 45185551 -40510203 + AluSp SINE Alu 1 289 -24 1757 89 67 133 chr15 45185551 45185566 -40510188 + AluSx SINE Alu 142 156 -156 438 20 0 0 chr15 45185566 45185617 -40510137 + (CA)n Simple_repeat Simple_repeat 2 52 0 1757 89 67 133 chr15 45185617 45185782 -40509972 + AluSx SINE Alu 156 295 -17 2468 75 0 10 chr15 45185783 45186090 -40509664 + AluY SINE Alu 1 304 -7 1999 113 14 7 chr15 45186190 45186473 -40509281 - AluSx SINE Alu -27 285 1 408 248 9 0 chr15 45186595 45186704 -40509050 - L1ME2 LINE L1 -10 6154 6045 206 237 0 0 chr15 45187168 45187206 -40508548 + (CA)n Simple_repeat Simple_repeat 2 39 0 1756 153 13 39 chr15 45188472 45188779 -40506975 - AluJo SINE Alu -13 299 1 260 306 0 0 chr15 45188780 45188865 -40506889 - L1ME2 LINE L1 -1983 5825 5741 2125 142 3 0 chr15 45188956 45189258 -40506496 - AluSx SINE Alu -9 303 1 227 159 9 196 chr15 45189573 45189591 -40506163 - MIR SINE MIR -89 173 153 2243 110 10 0 chr15 45189591 45189890 -40505864 - AluSq SINE Alu -10 303 2 227 159 9 196 chr15 45189890 45189978 -40505776 - MIR SINE MIR -109 153 87 2291 95 0 3 chr15 45190327 45190656 -40505098 - AluSc SINE Alu 0 328 1 1129 127 6 12 chr15 45190726 45190899 -40504855 - L1PA10 LINE L1 -12 6156 5985 1823 145 62 24 chr15 45191012 45191302 -40504452 + AluJo SINE Alu 1 301 -11 1641 242 64 43 chr15 45191318 45191847 -40503907 + MLT1F1 LTR MaLR 3 567 0 970 122 0 7 chr15 45191929 45192068 -40503686 - AluJ SINE Alu -18 294 157 747 152 0 0 chr15 45192068 45192173 -40503581 - AluJ SINE Alu -205 107 3 311 319 60 44 chr15 45192199 45192381 -40503373 - L1ME2 LINE L1 -426 5695 5511 2394 99 0 6 chr15 45192405 45192719 -40503035 - AluSq SINE Alu -1 312 1 278 308 17 40 chr15 45192906 45193069 -40502685 - MIR3 SINE MIR -38 170 16 1912 163 27 0 chr15 45193178 45193478 -40502276 + AluJb SINE Alu 1 308 -4 515 218 204 7 chr15 45193944 45194091 -40501663 - MER5B DNA MER1_type -2 176 1 2962 77 7 0 chr15 45194453 45194856 -40500898 + THE1A-int LTR MaLR 1175 1580 0 2799 80 3 0 chr15 45194856 45195208 -40500546 + THE1A LTR MaLR 1 353 -2 484 341 84 45 chr15 45195341 45195454 -40500300 - L1MEd LINE L1 -5287 832 725 2119 161 0 0 chr15 45195454 45195764 -40499990 - AluJb SINE Alu -2 310 1 484 341 84 45 chr15 45195764 45195958 -40499796 - L1MEd LINE L1 -5394 725 513 2617 60 0 0 chr15 45196009 45196310 -40499444 - AluY SINE Alu -10 301 1 2089 143 3 3 chr15 45196657 45196964 -40498790 - AluSx SINE Alu -5 307 1 1644 169 61 101 chr15 45197120 45197528 -40498226 + MSTD LTR MaLR 1 392 -4 2170 110 0 10 chr15 45197641 45197933 -40497821 - AluSg1 SINE Alu -20 289 1 24 85 0 0 chr15 45198116 45198175 -40497579 + AT_rich Low_complexity Low_complexity 1 59 0 739 125 9 0 chr15 45198400 45198512 -40497242 - LTR8 LTR ERV1 0 691 579 1185 129 53 0 chr15 45198512 45198683 -40497071 - AluSx SINE Alu -125 187 8 193 200 0 80 chr15 45199124 45199199 -40496555 + MIR SINE MIR 103 171 -91 345 136 0 57 chr15 45199342 45199430 -40496324 + (TCC)n Simple_repeat Simple_repeat 2 84 0 1046 136 87 5 chr15 45199532 45199729 -40496025 - Tigger2 DNA MER2_type -21 2687 2471 2030 117 79 0 chr15 45199729 45200019 -40495735 + AluSp SINE Alu 1 313 0 2073 170 0 0 chr15 45200036 45200347 -40495407 + AluSx SINE Alu 1 311 -1 4558 134 13 11 chr15 45200432 45201187 -40494567 - Tigger2 DNA MER2_type -1961 757 1 903 238 87 9 chr15 45201194 45201425 -40494329 - L1MC/D LINE L1 -2037 5771 5523 578 346 35 0 chr15 45201832 45202060 -40493694 + L2 LINE L2 2430 2665 -649 721 281 98 24 chr15 45202063 45202398 -40493356 + MLT1J LTR MaLR 1 360 -151 187 286 143 9 chr15 45203533 45203645 -40492109 - MIR SINE MIR -80 182 56 1485 166 19 4 chr15 45204192 45204327 -40491427 - AluJb SINE Alu -27 285 153 2410 68 0 7 chr15 45204327 45204636 -40491118 - AluSg SINE Alu -3 307 1 1485 166 19 4 chr15 45204636 45204771 -40490983 - AluJb SINE Alu -159 153 11 401 247 11 0 chr15 45205139 45205232 -40490522 + L2 LINE L2 3220 3313 0 204 267 100 22 chr15 45205223 45205313 -40490441 - MIR SINE MIR -62 200 104 * 200 241 0 69 chr15 45205441 45205499 -40490255 - MIR SINE MIR -130 78 25 488 299 41 7 chr15 45205690 45205837 -40489917 - L2 LINE L2 -1 3312 3161 1916 187 61 3 chr15 45205859 45206238 -40489516 + MLT1E2 LTR MaLR 222 622 -4 2525 121 36 43 chr15 45206290 45206433 -40489321 - LTR23 LTR ERV1 0 437 295 1827 165 0 3 chr15 45206433 45206730 -40489024 - AluJb SINE Alu -16 296 1 2525 121 36 43 chr15 45206730 45206827 -40488927 - LTR23 LTR ERV1 -142 295 199 2251 96 3 0 chr15 45206827 45207129 -40488625 - AluSp SINE Alu -10 303 1 2525 121 36 43 chr15 45207129 45207325 -40488429 - LTR23 LTR ERV1 -238 199 3 484 281 106 9 chr15 45207544 45207761 -40487993 + MLT1J LTR MaLR 1 238 -273 * 544 282 75 70 chr15 45207748 45207989 -40487765 + MLT1J2 LTR MaLR 201 442 -8 554 260 14 0 chr15 45208766 45208912 -40486842 - LTR16A LTR ERVL 0 450 303 * 832 242 83 59 chr15 45208911 45209332 -40486422 + MER20B DNA MER1_type 322 752 -31 755 237 58 0 chr15 45209341 45209497 -40486257 + FRAM SINE Alu 1 165 -1 906 180 0 0 chr15 45209506 45209684 -40486070 + GA-rich Low_complexity Low_complexity 3 180 0 650 178 11 39 chr15 45209640 45209820 -40485934 + G-rich Low_complexity Low_complexity 6 180 0 * 350 252 126 24 chr15 45211387 45211509 -40484245 - MIR SINE MIR -79 183 49 280 246 112 42 chr15 45211509 45211678 -40484076 + MIR3 SINE MIR 3 182 -80 301 339 0 8 chr15 45212636 45212760 -40482994 + MIR3 SINE MIR 81 203 -5 248 246 43 0 chr15 45212856 45212925 -40482829 - MIR SINE MIR -74 188 117 320 253 22 11 chr15 45213648 45213739 -40482015 + MIR SINE MIR 55 146 -116 333 306 135 10 chr15 45213972 45214054 -40481700 + L1MC4 LINE L1 7820 7890 -152 2244 99 0 3 chr15 45214054 45214366 -40481388 + AluSq SINE Alu 1 311 -2 333 306 135 10 chr15 45214366 45214476 -40481278 + L1MC4 LINE L1 7890 8036 -6 279 282 12 24 chr15 45215313 45215398 -40480356 - L2 LINE L2 -7 3265 3182 245 357 8 24 chr15 45215421 45215547 -40480207 + L2 LINE L2 3141 3264 -8 282 280 32 80 chr15 45215913 45215977 -40479777 - MIR SINE MIR -96 166 109 2107 109 24 0 chr15 45215977 45216270 -40479484 + AluSg SINE Alu 1 300 -10 282 280 32 80 chr15 45216270 45216330 -40479424 - MIR SINE MIR -153 109 48 269 253 131 0 chr15 45216518 45216617 -40479137 - MIR SINE MIR -105 157 46 302 363 32 0 chr15 45217351 45217475 -40478279 + MIR SINE MIR 65 192 -70 392 293 51 38 chr15 45217870 45218027 -40477727 - MIR SINE MIR -56 206 48 259 340 117 5 chr15 45218099 45218287 -40477467 + MIR SINE MIR 47 255 -7 268 295 39 0 chr15 45218447 45218525 -40477229 + L2 LINE L2 3192 3272 0 417 196 65 0 chr15 45219567 45219659 -40476095 - MIR SINE MIR -119 143 46 234 330 21 10 chr15 45219662 45219759 -40475995 + L2 LINE L2 3171 3268 -4 2146 114 0 7 chr15 45219785 45220091 -40475663 - AluSg SINE Alu -1 309 6 2981 191 70 50 chr15 45220193 45220555 -40475199 - L1M4 LINE L1 -882 5264 4911 1506 171 7 68 chr15 45220555 45220865 -40474889 - AluJo SINE Alu -21 291 1 2981 191 70 50 chr15 45220865 45221400 -40474354 - L1M4 LINE L1 -1235 4911 4349 * 3156 252 57 25 chr15 45221385 45221465 -40474289 + L1MEc LINE L1 35 111 -6285 2298 97 0 0 chr15 45221465 45221765 -40473989 + AluSg SINE Alu 1 300 -10 3156 252 57 25 chr15 45221765 45222398 -40473356 + L1MEc LINE L1 111 793 -5603 2217 103 3 0 chr15 45222398 45222699 -40473055 + AluSg SINE Alu 1 302 -8 3156 252 57 25 chr15 45222699 45222995 -40472759 + L1MEc LINE L1 793 1078 -5318 226 266 15 15 chr15 45223153 45223229 -40472525 + MIR SINE MIR 77 147 -61 2023 191 13 101 chr15 45223521 45223977 -40471777 + MLT1D LTR MaLR 1 401 -104 2132 123 13 0 chr15 45223977 45224285 -40471469 - AluSx SINE Alu 0 312 1 2023 191 13 101 chr15 45224285 45224382 -40471372 + MLT1D LTR MaLR 401 505 0 902 272 16 29 chr15 45224648 45224866 -40470888 + MIR SINE MIR 9 225 -37 1565 93 4 18 chr15 45224866 45225091 -40470663 - AluSg/x SINE Alu -7 305 84 902 272 16 29 chr15 45225091 45225118 -40470636 + MIR SINE MIR 225 251 -11 517 270 116 37 chr15 45226032 45226273 -40469481 - L2 LINE L2 -2 3311 3052 306 286 0 0 chr15 45226288 45226365 -40469389 - MIR SINE MIR 0 262 186 672 205 111 6 chr15 45226406 45226577 -40469177 + MIR SINE MIR 53 241 -21 290 282 78 10 chr15 45226603 45226706 -40469048 - L2 LINE L2 -347 2966 2857 274 182 0 41 chr15 45226784 45226905 -40468849 + C-rich Low_complexity Low_complexity 4 119 0 295 272 88 18 chr15 45227094 45227208 -40468546 - MIR3 SINE MIR -50 158 37 2192 111 3 13 chr15 45227647 45227962 -40467792 + AluSx SINE Alu 1 312 0 1936 168 52 52 chr15 45227966 45228354 -40467400 - MLT1B LTR MaLR 0 390 3 266 310 144 25 chr15 45228402 45228766 -40466988 - L2 LINE L2 -173 3099 2691 743 238 55 11 chr15 45228784 45228965 -40466789 - MER5A DNA MER1_type 0 189 1 246 164 15 45 chr15 45229375 45229443 -40466311 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 689 236 60 30 chr15 45229509 45229708 -40466046 + MIR SINE MIR 56 260 -2 52 0 0 0 chr15 45229762 45229814 -40465940 + AT_rich Low_complexity Low_complexity 1 52 0 1847 132 0 0 chr15 45229907 45230172 -40465582 + AluSx SINE Alu 1 265 -47 249 108 0 0 chr15 45230172 45230209 -40465545 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2416 78 3 0 chr15 45230832 45231141 -40464613 + AluSg SINE Alu 1 310 0 263 263 9 26 chr15 45231925 45232039 -40463715 + (TG)n Simple_repeat Simple_repeat 2 113 0 449 271 49 0 chr15 45232208 45232352 -40463402 + L2 LINE L2 2931 3081 -232 933 81 8 0 chr15 45232353 45232476 -40463278 + AluJb SINE Alu 1 124 -188 23 0 0 0 chr15 45232602 45232625 -40463129 + AT_rich Low_complexity Low_complexity 1 23 0 781 160 0 8 chr15 45232641 45232760 -40462994 - FLAM_C SINE Alu -15 118 1 24 0 0 0 chr15 45232767 45232791 -40462963 + AT_rich Low_complexity Low_complexity 1 24 0 248 282 13 13 chr15 45232990 45233068 -40462686 + MIR SINE MIR 72 149 -59 2149 122 3 0 chr15 45233073 45233376 -40462378 - AluSx SINE Alu -8 304 1 2571 87 11 0 chr15 45233392 45233748 -40462006 - L1PA16 LINE L1 -3 6163 5804 415 293 140 34 chr15 45234130 45234151 -40461603 + L1M4 LINE L1 5317 5334 -850 1878 158 0 16 chr15 45234151 45234468 -40461286 + AluJo SINE Alu 1 312 0 415 293 140 34 chr15 45234468 45234863 -40460891 + L1M4 LINE L1 5334 5778 -406 2357 85 0 3 chr15 45235052 45235357 -40460397 + AluSq SINE Alu 1 304 -9 1484 171 79 4 chr15 45235536 45235816 -40459938 - AluJb SINE Alu -9 303 3 1757 161 3 23 chr15 45235817 45236122 -40459632 - AluJb SINE Alu -13 299 1 504 282 35 7 chr15 45236736 45236878 -40458876 - MIR3 SINE MIR -4 204 59 1875 142 36 3 chr15 45236992 45237294 -40458460 - AluSx SINE Alu 0 312 1 610 214 0 0 chr15 45237294 45237406 -40458348 - L2 LINE L2 -10 3303 3192 261 326 32 0 chr15 45237617 45237712 -40458042 - MIR SINE MIR -65 197 100 202 188 0 0 chr15 45238669 45238701 -40457053 + polypurine Low_complexity Low_complexity 3 34 0 242 237 0 149 chr15 45238701 45238742 -40457012 - MER81 DNA DNA 0 114 69 1612 169 11 0 chr15 45238742 45239057 -40456697 - AluJb SINE Alu 0 320 3 242 237 0 149 chr15 45239057 45239127 -40456627 - MER81 DNA DNA -45 69 18 3648 154 75 21 chr15 45239159 45239457 -40456297 - LTR62 LTR ERVK -1 718 438 2064 137 0 0 chr15 45239457 45239756 -40455998 + AluSg SINE Alu 1 299 -11 2244 107 3 0 chr15 45239757 45240067 -40455687 + AluSx SINE Alu 2 312 0 3648 154 75 21 chr15 45240067 45240447 -40455307 - LTR62 LTR ERVK -280 439 1 267 318 54 23 chr15 45241322 45241451 -40454303 + MIR SINE MIR 43 175 -87 233 239 15 15 chr15 45241525 45241592 -40454162 + MIR3 SINE MIR 117 183 -25 213 39 0 0 chr15 45242378 45242404 -40453350 + (CA)n Simple_repeat Simple_repeat 1 26 0 1267 206 65 10 chr15 45242698 45242947 -40452807 + MER33 DNA MER1_type 1 272 -2313 2171 100 3 3 chr15 45242947 45243246 -40452508 + AluSx SINE Alu 1 299 -13 1267 206 65 10 chr15 45243246 45243302 -40452452 + MER33 DNA MER1_type 272 323 -1 360 265 23 45 chr15 45244814 45244946 -40450808 - MIR3 SINE MIR -38 170 42 818 200 5 67 chr15 45245005 45245215 -40450539 + MIR SINE MIR 56 252 -10 2138 152 5 49 chr15 45245591 45245790 -40449964 + MLT1B LTR MaLR 1 207 -183 2219 142 3 9 chr15 45245790 45246135 -40449619 - MER2 DNA MER2_type -1 343 1 2138 152 5 49 chr15 45246135 45246221 -40449533 + MLT1B LTR MaLR 207 295 -95 2369 80 0 3 chr15 45246221 45246533 -40449221 - AluSx SINE Alu -1 311 1 2138 152 5 49 chr15 45246533 45246654 -40449100 + MLT1B LTR MaLR 295 390 0 244 273 207 0 chr15 45246850 45246971 -40448783 - MIR SINE MIR -28 234 89 559 232 41 26 chr15 45247709 45247903 -40447851 + MIR3 SINE MIR 1 197 -11 2138 110 13 3 chr15 45248142 45248443 -40447311 - AluSx SINE Alu -7 305 2 284 276 79 0 chr15 45248451 45248527 -40447227 + MIR SINE MIR 104 185 -77 350 247 20 12 chr15 45249611 45249721 -40446033 + MIR SINE MIR 89 200 -31 236 280 27 27 chr15 45249832 45249907 -40445847 + MIR SINE MIR 20 94 -168 222 287 30 50 chr15 45250486 45250587 -40445167 - MIR3 SINE MIR -11 197 99 343 299 126 0 chr15 45250701 45250828 -40444926 + MIR SINE MIR 58 200 -62 500 233 112 42 chr15 45250851 45251066 -40444688 + MER106A DNA MER1_type 4 233 -3 231 337 37 37 chr15 45251434 45251597 -40444157 - L2 LINE L2 -223 3049 2887 1584 130 4 28 chr15 45251712 45251965 -40443789 - AluSx SINE Alu -62 250 4 217 263 38 25 chr15 45252267 45252347 -40443407 - L3b LINE CR1 -191 1392 1312 355 242 10 20 chr15 45252600 45252699 -40443055 + MIR3 SINE MIR 110 207 -1 687 314 80 27 chr15 45252702 45253040 -40442714 + L2 LINE L2 2917 3272 0 2251 102 3 0 chr15 45253593 45253897 -40441857 - AluSx SINE Alu -7 305 1 430 278 17 58 chr15 45253986 45254159 -40441595 - MIR SINE MIR -95 167 2 1364 124 60 0 chr15 45254280 45254481 -40441273 + AluJb SINE Alu 86 298 -14 426 250 115 7 chr15 45254757 45254905 -40440849 + MIR3 SINE MIR 16 179 -29 202 270 40 0 chr15 45256267 45256341 -40439413 - L2 LINE L2 -1391 1923 1847 350 297 45 0 chr15 45256352 45256507 -40439247 + L2 LINE L2 2583 2744 -570 229 333 78 23 chr15 45256870 45256999 -40438755 + L2 LINE L2 3137 3272 0 22 35 0 0 chr15 45257626 45257655 -40438099 + GC_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr15 45258011 45258034 -40437720 + (T)n Simple_repeat Simple_repeat 1 23 0 718 161 25 0 chr15 45258053 45258198 -40437556 - FLAM_C SINE Alu 0 148 1 1944 111 0 4 chr15 45259155 45259465 -40436289 - AluSg SINE Alu 0 309 1 342 269 73 54 chr15 45259514 45259691 -40436063 - MIR SINE MIR -63 145 16 238 231 0 90 chr15 45259713 45259791 -40435963 - MIR3 SINE MIR -29 179 109 310 263 0 75 chr15 45259864 45259997 -40435757 - MER5A DNA MER1_type -41 148 26 249 218 31 5 chr15 45260486 45260564 -40435190 - MIR SINE MIR -74 134 56 640 293 39 0 chr15 45260587 45260768 -40434986 - MIR SINE MIR -18 244 57 1983 99 92 0 chr15 45261057 45261340 -40434414 - AluSq SINE Alu -4 309 1 453 252 0 9 chr15 45261356 45261463 -40434291 + MIR3 SINE MIR 96 201 -7 273 311 20 0 chr15 45261560 45261708 -40434046 + (TG)n Simple_repeat Simple_repeat 1 151 0 313 283 16 43 chr15 45261729 45261913 -40433841 + (TG)n Simple_repeat Simple_repeat 2 180 0 191 167 24 0 chr15 45262562 45262604 -40433150 + CT-rich Low_complexity Low_complexity 2 44 0 438 127 0 0 chr15 45262605 45262676 -40433078 + (TCCCC)n Simple_repeat Simple_repeat 1 71 0 1912 147 0 20 chr15 45262678 45262847 -40432907 - AluJb SINE Alu -12 300 129 225 65 0 0 chr15 45262847 45262878 -40432876 + (TA)n Simple_repeat Simple_repeat 2 32 0 2205 77 0 3 chr15 45262878 45263163 -40432591 - AluY SINE Alu -27 284 1 1912 147 0 20 chr15 45263163 45263298 -40432456 - AluJb SINE Alu -181 131 1 404 231 26 8 chr15 45263791 45263908 -40431846 - MIR SINE MIR -95 167 49 285 359 25 38 chr15 45264636 45264795 -40430959 - MIR SINE MIR -91 171 15 306 250 169 15 chr15 45265245 45265381 -40430373 + MIR SINE MIR 96 252 -10 189 0 0 0 chr15 45265722 45265743 -40430011 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 646 272 0 82 chr15 45265750 45265993 -40429761 - L1ME1 LINE L1 -5 6161 5939 * 1702 177 37 29 chr15 45265979 45265996 -40429758 - L1ME1 LINE L1 -463 5703 5688 1398 155 143 19 chr15 45265996 45266145 -40429609 - AluJb SINE Alu -4 298 169 477 0 0 0 chr15 45266145 45266198 -40429556 + (TG)n Simple_repeat Simple_repeat 2 54 0 1398 155 143 19 chr15 45266198 45266313 -40429441 - AluJb SINE Alu -133 169 1 1702 177 37 29 chr15 45266313 45266674 -40429080 - L1ME1 LINE L1 -478 5688 5322 1562 98 0 0 chr15 45266689 45266893 -40428861 + AluSq SINE Alu 1 204 -109 1534 151 8 8 chr15 45267007 45267259 -40428495 - AluJo SINE Alu -1 311 60 576 226 0 133 chr15 45267283 45267509 -40428245 + L2 LINE L2 3105 3300 -13 239 297 9 72 chr15 45268499 45268610 -40427144 - L2 LINE L2 -211 3061 2958 340 235 21 109 chr15 45268626 45268835 -40426919 - MIR SINE MIR -54 208 18 183 80 0 0 chr15 45269017 45269042 -40426712 + (A)n Simple_repeat Simple_repeat 1 25 0 477 244 8 30 chr15 45269043 45269174 -40426580 + MIR SINE MIR 19 146 -62 188 289 0 0 chr15 45269358 45269403 -40426351 - MIR SINE MIR -35 227 183 1141 234 16 4 chr15 45270272 45270524 -40425230 - MIR SINE MIR -4 258 4 298 230 101 24 chr15 45270609 45270732 -40425022 + MIR SINE MIR 29 144 -64 400 227 98 110 chr15 45270952 45271216 -40424538 + MIR SINE MIR 2 262 0 2211 201 19 52 chr15 45271252 45271773 -40423981 + MLT1D LTR MaLR 2 505 0 2275 94 0 0 chr15 45271873 45272172 -40423582 + AluSx SINE Alu 1 299 -13 890 203 108 58 chr15 45272234 45272475 -40423279 + MLT1H LTR MaLR 14 266 -283 1455 236 105 31 chr15 45272499 45272985 -40422769 + MLT1F1 LTR MaLR 42 567 0 367 165 68 39 chr15 45273125 45273228 -40422526 + MLT1H LTR MaLR 437 542 -7 296 333 181 18 chr15 45273252 45273645 -40422109 - L2 LINE L2 -462 2852 2396 1323 287 83 12 chr15 45273772 45274256 -40421498 - LTR33 LTR ERVL 0 521 4 955 262 130 11 chr15 45274295 45274650 -40421104 + MLT1L LTR MaLR 209 605 -10 803 243 182 0 chr15 45275850 45276064 -40419690 - MIR SINE MIR -2 260 8 372 254 13 6 chr15 45276147 45276287 -40419467 + MIR SINE MIR 21 160 -48 831 224 67 106 chr15 45276665 45277022 -40418732 - MLT1I LTR MaLR -4 405 63 2235 99 3 0 chr15 45277045 45277348 -40418406 - AluSc SINE Alu -3 306 3 1928 78 45 0 chr15 45277360 45277679 -40418075 - AluY SINE Alu 0 331 1 334 277 23 15 chr15 45277743 45277873 -40417881 + Charlie8 DNA MER1_type 26 156 -2261 2285 141 34 3 chr15 45277897 45278251 -40417503 - MLT1A1 LTR MaLR 0 365 1 1023 195 37 148 chr15 45278273 45278472 -40417282 - MLT1J LTR MaLR -11 500 373 2058 107 48 0 chr15 45278472 45278762 -40416992 - AluSx SINE Alu -8 304 1 1023 195 37 148 chr15 45278762 45278993 -40416761 - MLT1J LTR MaLR -138 373 118 25 31 0 0 chr15 45279229 45279261 -40416493 + GC_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr15 45279563 45279590 -40416164 + GC_rich Low_complexity Low_complexity 1 27 0 204 158 0 0 chr15 45280027 45280065 -40415689 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 71 0 0 chr15 45280155 45280197 -40415557 + GC_rich Low_complexity Low_complexity 1 42 0 180 111 0 0 chr15 45280770 45280797 -40414957 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 216 97 0 0 chr15 45281404 45281435 -40414319 + (CGG)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr15 45281557 45281602 -40414152 + GC_rich Low_complexity Low_complexity 1 45 0 31 82 0 0 chr15 45281730 45281803 -40413951 + GC_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr15 45282160 45282183 -40413571 + GC_rich Low_complexity Low_complexity 1 23 0 341 291 19 10 chr15 45283719 45283822 -40411932 - L2 LINE L2 -11 3302 3199 200 324 15 0 chr15 45284232 45284300 -40411454 + MIR SINE MIR 46 114 -94 239 261 78 17 chr15 45284872 45284987 -40410767 + MIR3 SINE MIR 33 154 -54 2514 163 23 25 chr15 45286544 45287017 -40408737 + L1MB7 LINE L1 5694 6165 -19 427 305 23 0 chr15 45287069 45287200 -40408554 + MIR3 SINE MIR 68 201 -7 295 305 153 0 chr15 45287752 45287883 -40407871 + MIR3 SINE MIR 17 167 -41 367 183 211 63 chr15 45288158 45288300 -40407454 + MIR SINE MIR 36 198 -64 290 232 141 0 chr15 45288892 45288991 -40406763 - MIR3 SINE MIR -8 200 88 1032 186 5 0 chr15 45289123 45289311 -40406443 + MER53 DNA DNA 1 189 0 720 226 92 10 chr15 45289391 45289586 -40406168 - MIR SINE MIR -35 227 17 1986 92 20 52 chr15 45290482 45290787 -40404967 + AluSx SINE Alu 13 307 -5 1883 165 0 0 chr15 45290798 45291095 -40404659 + AluJo SINE Alu 1 297 -15 2261 91 0 0 chr15 45291393 45291691 -40404063 - AluSg SINE Alu -12 298 1 278 175 0 35 chr15 45292325 45292382 -40403372 - MIR SINE MIR -59 149 95 1472 192 56 13 chr15 45292385 45292687 -40403067 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr15 45293104 45293126 -40402628 + AT_rich Low_complexity Low_complexity 1 22 0 323 78 20 0 chr15 45294051 45294102 -40401652 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 208 203 78 16 chr15 45295432 45295496 -40400258 - MIR SINE MIR 0 262 195 190 256 8 116 chr15 45295766 45295895 -40399859 - MIR SINE MIR -73 135 21 384 59 0 0 chr15 45296185 45296236 -40399518 + (TG)n Simple_repeat Simple_repeat 1 51 0 585 315 84 0 chr15 45297084 45297297 -40398457 - MIR SINE MIR -11 251 21 293 264 22 11 chr15 45298690 45298781 -40396973 + MIR SINE MIR 104 195 -67 184 260 82 14 chr15 45299098 45299171 -40396583 + L2 LINE L2 3169 3246 -67 186 330 85 0 chr15 45299191 45299309 -40396445 - MIR3 SINE MIR -79 129 2 674 265 55 23 chr15 45299555 45299774 -40395980 + MIR SINE MIR 5 230 -32 434 301 153 44 chr15 45299802 45300168 -40395586 - L2 LINE L2 -38 3234 2829 247 173 77 0 chr15 45300217 45300269 -40395485 - L1ME3A LINE L1 -39 6131 6076 337 312 24 0 chr15 45300968 45301093 -40394661 + MIR3 SINE MIR 50 177 -31 1503 167 67 23 chr15 45301479 45301778 -40393976 + AluJo SINE Alu 1 312 0 373 341 54 68 chr15 45301850 45302219 -40393535 - L2 LINE L2 -82 3190 2827 323 0 48 0 chr15 45302359 45302401 -40393353 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 791 203 42 9 chr15 45302491 45302707 -40393047 - MIR SINE MIR -32 230 6 211 296 53 8 chr15 45304076 45304194 -40391560 + MIR SINE MIR 59 181 -27 217 327 133 0 chr15 45304730 45304843 -40390911 + MIR3 SINE MIR 33 160 -48 449 224 154 39 chr15 45304843 45304999 -40390755 - MER5B DNA MER1_type 0 178 5 2429 101 0 13 chr15 45305160 45305476 -40390278 - AluSx SINE Alu 0 312 1 1451 266 37 67 chr15 45305854 45305927 -40389827 - L1ME3A LINE L1 -5 6165 6091 2313 90 3 10 chr15 45305927 45306228 -40389526 - AluSp SINE Alu -14 299 1 1451 266 37 67 chr15 45306228 45306469 -40389285 - L1ME3A LINE L1 -79 6091 5844 2444 100 0 0 chr15 45306469 45306778 -40388976 - AluSg SINE Alu -1 309 1 1451 266 37 67 chr15 45306778 45307078 -40388676 - L1ME3A LINE L1 -326 5844 5568 202 295 114 20 chr15 45307092 45307241 -40388513 - MIR3 SINE MIR -25 183 21 659 262 50 15 chr15 45308772 45308974 -40386780 - MIR SINE MIR -34 228 20 183 237 53 53 chr15 45308924 45309000 -40386754 + MIR SINE MIR 45 120 -88 * 3985 185 80 53 chr15 45309116 45309230 -40386524 - L1MC4 LINE L1 -384 5782 5673 2801 13 0 0 chr15 45309230 45309528 -40386226 + AluYa5 SINE Alu 1 298 -13 3985 185 80 53 chr15 45309528 45310017 -40385737 - L1MC4 LINE L1 -493 5673 5199 2096 141 14 3 chr15 45310017 45310314 -40385440 - AluSx SINE Alu -12 300 1 3985 185 80 53 chr15 45310314 45310443 -40385311 - L1MC4 LINE L1 -967 5199 5075 1562 188 3 38 chr15 45310443 45310735 -40385019 - AluJo SINE Alu -30 282 1 3985 185 80 53 chr15 45310735 45311722 -40384032 - L1MC4 LINE L1 -1091 5075 4288 268 261 17 101 chr15 45311816 45311935 -40383819 + MIR3 SINE MIR 83 191 -17 554 201 168 39 chr15 45312572 45312751 -40383003 - MIR SINE MIR -12 250 49 879 141 6 34 chr15 45312780 45312957 -40382797 + L1MB4 LINE L1 6001 6172 -8 343 293 61 20 chr15 45313453 45313600 -40382154 + L1MC5 LINE L1 7709 7861 -100 894 202 148 81 chr15 45313602 45314008 -40381746 - LTR16A1 LTR ERVL -4 453 21 239 173 67 40 chr15 45314028 45314103 -40381651 + L1MC5 LINE L1 7855 7931 -30 257 314 7 114 chr15 45314212 45314264 -40381490 - MIR SINE MIR -125 137 81 689 144 25 99 chr15 45314264 45314466 -40381288 + MER53 DNA DNA 1 187 -2 257 314 7 114 chr15 45314466 45314553 -40381201 - MIR SINE MIR -181 81 13 432 248 22 121 chr15 45314604 45314742 -40381012 + MER5B DNA MER1_type 9 109 -69 2260 114 0 10 chr15 45314742 45315041 -40380713 - AluSc SINE Alu -13 296 1 432 248 22 121 chr15 45315041 45315105 -40380649 + MER5B DNA MER1_type 109 178 0 535 198 0 9 chr15 45316063 45316174 -40379580 - L1MB3 LINE L1 -30 6153 6044 2489 100 0 0 chr15 45317152 45317462 -40378292 - AluSg SINE Alu 0 310 1 622 261 151 11 chr15 45317753 45317889 -40377865 - L1ME4a LINE L1 -33 6088 5972 667 179 8 0 chr15 45317889 45318012 -40377742 - FLAM_A SINE Alu -9 124 1 622 261 151 11 chr15 45318012 45318147 -40377607 - L1ME4a LINE L1 -149 5972 5779 576 229 64 55 chr15 45318538 45318756 -40376998 + MIR SINE MIR 40 259 -3 23 33 0 0 chr15 45319186 45319216 -40376538 + AT_rich Low_complexity Low_complexity 1 30 0 253 211 70 0 chr15 45319513 45319570 -40376184 + MIR SINE MIR 89 149 -59 186 319 95 26 chr15 45319638 45319754 -40376000 - MER5A DNA MER1_type -5 184 61 341 230 28 0 chr15 45319767 45319857 -40375897 - L1MB7 LINE L1 -6 6168 6069 209 175 0 0 chr15 45321085 45321125 -40374629 + MIR SINE MIR 109 148 -60 223 250 153 0 chr15 45321448 45321520 -40374234 + MIR SINE MIR 120 202 -60 258 287 126 0 chr15 45321540 45321627 -40374127 - MIR SINE MIR -61 147 50 763 240 122 73 chr15 45321650 45322225 -40373529 - L1ME4a LINE L1 -1 6120 5518 187 341 68 0 chr15 45323682 45323770 -40371984 - MIR SINE MIR -66 142 49 498 238 8 8 chr15 45323784 45323910 -40371844 + MIR3 SINE MIR 61 186 -22 22 0 0 0 chr15 45326278 45326300 -40369454 + AT_rich Low_complexity Low_complexity 1 22 0 193 305 61 0 chr15 45326943 45327025 -40368729 + MIR3 SINE MIR 81 167 -41 1586 161 60 18 chr15 45327115 45327251 -40368503 + AluJb SINE Alu 1 130 -182 2240 122 7 0 chr15 45327251 45327554 -40368200 + AluSq SINE Alu 1 305 -8 1586 161 60 18 chr15 45327554 45327702 -40368052 + AluJb SINE Alu 130 297 -15 837 218 116 68 chr15 45328647 45329051 -40366703 - LTR16C LTR ERVL -13 478 4 201 224 60 30 chr15 45329795 45329862 -40365892 + L2 LINE L2 3173 3241 -31 * 421 257 59 15 chr15 45329859 45329995 -40365759 - MIR3 SINE MIR -15 193 52 1900 153 6 37 chr15 45330577 45330898 -40364856 + AluJo SINE Alu 1 311 -1 236 304 118 43 chr15 45331041 45331202 -40364552 - MIR SINE MIR -10 252 80 271 301 0 26 chr15 45331588 45331680 -40364074 - MIR SINE MIR -65 143 59 330 310 7 48 chr15 45332697 45332842 -40362912 - MIR SINE MIR -19 243 105 263 179 18 18 chr15 45333053 45333109 -40362645 + MIR SINE MIR 66 121 -87 28 48 0 0 chr15 45334307 45334349 -40361405 + AT_rich Low_complexity Low_complexity 1 42 0 272 264 136 27 chr15 45334750 45334860 -40360894 - MIR3 SINE MIR -21 187 66 335 306 15 45 chr15 45335052 45335186 -40360568 + MIR3 SINE MIR 9 138 -70 468 296 67 50 chr15 45336399 45336519 -40359235 + L1MEc LINE L1 2175 2292 -3923 2179 144 0 0 chr15 45336519 45336825 -40358929 + AluSx SINE Alu 1 306 -6 468 296 67 50 chr15 45336825 45337022 -40358732 + L1MEc LINE L1 2292 2441 -3774 846 219 39 0 chr15 45337029 45337207 -40358547 - MER58A DNA MER1_type -9 215 31 280 327 38 0 chr15 45337246 45337405 -40358349 + L1MEc LINE L1 2492 2656 -3559 210 71 0 0 chr15 45337405 45337433 -40358321 + (GA)n Simple_repeat Simple_repeat 1 28 0 372 88 0 0 chr15 45337458 45337515 -40358239 - L1PB3 LINE L1 0 6154 6098 218 298 10 55 chr15 45387641 45387828 -40307926 + MIR SINE MIR 26 234 -28 250 284 28 55 chr15 45387874 45387983 -40307771 + LTR16A LTR ERVL 64 169 -281 623 261 43 57 chr15 45388863 45389143 -40306611 + MLT1L LTR MaLR 330 605 -10 282 369 58 44 chr15 45389270 45389614 -40306140 + L2 LINE L2 2924 3272 0 365 208 208 47 chr15 45389682 45389831 -40305923 - MIR SINE MIR -2 260 88 29 60 0 0 chr15 45391113 45391163 -40304591 + AT_rich Low_complexity Low_complexity 1 50 0 2793 239 37 42 chr15 45391470 45392359 -40303395 + L1MCb LINE L1 1 885 -5160 1841 166 7 3 chr15 45392359 45392648 -40303106 + AluSq SINE Alu 1 290 -23 207 0 0 0 chr15 45393769 45393792 -40301962 + (C)n Simple_repeat Simple_repeat 1 23 0 447 277 80 0 chr15 45394273 45394410 -40301344 + MIR SINE MIR 78 225 -37 204 150 0 0 chr15 45394551 45394591 -40301163 + MIR SINE MIR 88 127 -81 1778 87 0 0 chr15 45395853 45396114 -40299640 + L1PA6 LINE L1 5907 6167 0 248 224 17 0 chr15 45396275 45396333 -40299421 + CT-rich Low_complexity Low_complexity 1 59 0 518 143 0 0 chr15 45397406 45397490 -40298264 - AluSg SINE Alu -224 86 3 961 171 12 0 chr15 45397494 45397658 -40298096 - FRAM SINE Alu 0 166 1 1869 144 0 17 chr15 45397667 45397959 -40297795 - AluJb SINE Alu -5 307 21 247 326 104 0 chr15 45398196 45398340 -40297414 + L2 LINE L2 2401 2559 -755 1853 60 56 8 chr15 45398877 45399127 -40296627 - AluY SINE Alu -11 300 39 279 274 194 8 chr15 45399127 45399251 -40296503 - MLT1L LTR MaLR -373 242 96 569 221 58 7 chr15 45399379 45399533 -40296221 + MIR SINE MIR 100 261 -1 352 259 7 59 chr15 45399618 45399753 -40296001 + MIR3 SINE MIR 79 206 -2 842 266 0 40 chr15 45400121 45400369 -40295385 - MIR SINE MIR -3 259 22 1708 131 144 93 chr15 45400494 45401052 -40294702 - L1MC3 LINE L1 0 7785 5725 456 321 42 18 chr15 45401169 45401334 -40294420 - MLT1I LTR MaLR -142 267 99 221 75 25 0 chr15 45401698 45401738 -40294016 - L2 LINE L2 -218 3054 3014 2096 203 23 8 chr15 45401884 45402371 -40293383 + L1 LINE L1 4864 5357 -789 1221 229 108 8 chr15 45403307 45403696 -40292058 - L1M4 LINE L1 -1325 4821 4394 283 281 42 10 chr15 45403695 45403791 -40291963 + MLT1-int LTR MaLR 796 894 -477 * 324 250 10 60 chr15 45403862 45403962 -40291792 - L1M4 LINE L1 -1756 4390 4296 1423 113 66 0 chr15 45403971 45404183 -40291571 - AluSg/x SINE Alu -2 308 83 718 200 47 0 chr15 45404209 45404379 -40291375 - L1M4 LINE L1 -1841 4305 4128 820 107 0 121 chr15 45404911 45405051 -40290703 - AluSp SINE Alu -188 125 3 1075 127 38 0 chr15 45405053 45405210 -40290544 - AluJb SINE Alu -14 298 136 611 212 66 98 chr15 45405211 45405333 -40290421 - L1MC5 LINE L1 -130 7831 7707 2438 88 3 0 chr15 45405333 45405638 -40290116 - AluSp SINE Alu -7 306 1 611 212 66 98 chr15 45405638 45405850 -40289904 - L1MC5 LINE L1 -254 7707 7508 896 213 102 28 chr15 45405930 45406184 -40289570 + MER93a LTR ERV1 116 388 -14 1551 184 71 0 chr15 45406184 45406467 -40289287 - AluJo SINE Alu -9 303 1 27 49 0 0 chr15 45406557 45406598 -40289156 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr15 45406680 45406726 -40289028 + AT_rich Low_complexity Low_complexity 1 46 0 420 170 1 35 chr15 45406848 45406952 -40288802 - MLT1E LTR MaLR -494 99 1 312 273 20 50 chr15 45407289 45407388 -40288366 - MIR SINE MIR -86 122 27 298 213 33 16 chr15 45407450 45407511 -40288243 + MIR SINE MIR 88 149 -59 992 167 368 43 chr15 45407537 45407860 -40287894 + MER31B LTR ERV1 1 428 -38 1662 176 0 25 chr15 45407887 45408171 -40287583 + AluJo SINE Alu 5 281 -31 1108 155 32 11 chr15 45408285 45408472 -40287282 + AluJb SINE Alu 115 305 -7 348 215 51 0 chr15 45408475 45408554 -40287200 - MIR SINE MIR -133 129 47 319 267 89 7 chr15 45409143 45409289 -40286465 - L2 LINE L2 -213 3059 2902 425 180 5 82 chr15 45409859 45410053 -40285701 + G-rich Low_complexity Low_complexity 2 180 0 616 79 30 30 chr15 45410271 45410372 -40285382 + FRAM SINE Alu 57 157 -19 1037 182 33 0 chr15 45410373 45410587 -40285167 + L1MB3 LINE L1 5899 6119 -64 2045 148 7 0 chr15 45410587 45410890 -40284864 + AluSg SINE Alu 1 305 -5 289 200 0 0 chr15 45410926 45410991 -40284763 + L1MB3 LINE L1 6117 6181 -2 1619 92 10 0 chr15 45411713 45411920 -40283834 + AluSg1 SINE Alu 4 212 -97 298 104 0 0 chr15 45411920 45411968 -40283786 + AluSg1 SINE Alu 255 302 0 483 306 82 7 chr15 45412288 45412435 -40283319 - MIR SINE MIR -72 190 33 2684 112 37 2 chr15 45413223 45413651 -40282103 + LTR56 LTR ERV1 1 443 -2 222 200 27 40 chr15 45413684 45413737 -40282017 + (TA)n Simple_repeat Simple_repeat 1 54 -20 2135 102 3 30 chr15 45413737 45414032 -40281722 + AluSc SINE Alu 1 287 -22 222 200 27 40 chr15 45414032 45414053 -40281701 + (TA)n Simple_repeat Simple_repeat 54 74 0 1170 112 11 0 chr15 45414103 45414281 -40281473 + MER41B LTR ERV1 1 180 -455 594 290 98 5 chr15 45414813 45415037 -40280717 - MIR SINE MIR -2 260 16 198 0 0 0 chr15 45415762 45415784 -40279970 + (A)n Simple_repeat Simple_repeat 1 22 0 282 221 23 92 chr15 45415784 45415915 -40279839 + L1MC5 LINE L1 7813 7934 -27 421 184 0 13 chr15 45416003 45416079 -40279675 - FLAM SINE Alu -14 129 55 321 238 94 0 chr15 45416082 45416192 -40279562 + L1ME LINE L1 5561 5663 -503 2102 122 6 28 chr15 45416340 45416659 -40279095 - AluSx SINE Alu 0 312 1 2600 208 17 7 chr15 45416661 45417243 -40278511 + L1ME1 LINE L1 5574 6161 -5 347 229 38 6 chr15 45417767 45417924 -40277830 + (CCGCG)n Simple_repeat Simple_repeat 1 162 0 307 262 37 120 chr15 45418774 45418965 -40276789 - MIR3 SINE MIR -10 198 24 946 202 16 0 chr15 45418977 45419160 -40276594 - MER5A DNA MER1_type 0 189 4 1773 145 3 132 chr15 45419211 45419428 -40276326 - MER1B DNA MER1_type -2373 337 190 1952 132 0 0 chr15 45419428 45419693 -40276061 + AluSx SINE Alu 3 267 -45 1773 145 3 132 chr15 45419693 45419862 -40275892 - MER1B DNA MER1_type -2520 190 1 184 327 176 6 chr15 45420772 45420931 -40274823 + MIR3 SINE MIR 1 186 -22 291 319 67 17 chr15 45421663 45421782 -40273972 + MIR SINE MIR 58 182 -80 341 169 70 21 chr15 45422156 45422298 -40273456 + (GTTTG)n Simple_repeat Simple_repeat 3 151 0 448 340 2 2 chr15 45422422 45422825 -40272929 + C-rich Low_complexity Low_complexity 1 403 0 1250 184 33 11 chr15 45422895 45423166 -40272588 + MLT1A1 LTR MaLR 89 365 0 896 260 106 31 chr15 45423512 45423900 -40271854 + LTR16A1 LTR ERVL 2 418 -39 236 241 76 13 chr15 45424549 45424628 -40271126 - MIR SINE MIR -72 190 107 185 167 0 0 chr15 45425450 45425480 -40270274 - L2 LINE L2 -14 3258 3229 2052 112 23 0 chr15 45425557 45425861 -40269893 - AluY SINE Alu 0 311 1 342 313 54 9 chr15 45425864 45425976 -40269778 - MIR SINE MIR -58 150 34 1770 90 20 0 chr15 45425981 45426236 -40269518 - LTR8 LTR ERV1 0 691 432 8083 106 24 8 chr15 45426570 45427090 -40268664 + HUERS-P1 LTR ERV1 3334 3844 -2419 2212 84 0 7 chr15 45427090 45427374 -40268380 + AluY SINE Alu 12 293 -18 8083 106 24 8 chr15 45427374 45428171 -40267583 + HUERS-P1 LTR ERV1 3844 4676 -1587 2061 138 3 0 chr15 45428171 45428454 -40267300 - AluSq SINE Alu -27 286 3 247 186 0 0 chr15 45428728 45428771 -40266983 + L2 LINE L2 3266 3308 -5 1325 215 35 24 chr15 45429495 45429956 -40265798 - L1MDb LINE L1 -5052 1491 1026 296 302 9 17 chr15 45430018 45430134 -40265620 - L1MDb LINE L1 -5512 1031 917 232 284 112 15 chr15 45430167 45430301 -40265453 - L1MDb LINE L1 -5609 921 775 317 372 34 46 chr15 45430643 45430968 -40264786 - L1MDb LINE L1 -6193 347 27 383 271 32 97 chr15 45431074 45431414 -40264340 - L1MEd LINE L1 -5221 898 581 2242 89 0 7 chr15 45431516 45431796 -40263958 + AluSg SINE Alu 1 278 -32 914 83 13 25 chr15 45431796 45431953 -40263801 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 216 0 0 0 chr15 45432597 45432621 -40263133 + (T)n Simple_repeat Simple_repeat 1 24 0 8487 88 16 22 chr15 45433671 45435038 -40260716 - HUERS-P1 LTR ERV1 -3956 1990 666 225 94 0 0 chr15 45435487 45435519 -40260235 + (T)n Simple_repeat Simple_repeat 1 32 0 2559 58 3 0 chr15 45435519 45435844 -40259910 - LTR17 LTR ERV1 -454 326 1 2237 69 3 0 chr15 45435844 45436134 -40259620 - HERV17 LTR ERV1 0 8626 8336 260 103 0 0 chr15 45436125 45436164 -40259590 - HERV17 LTR ERV1 -1078 7548 7510 * 47252 50 15 5 chr15 45436157 45437045 -40258709 - HERV17 LTR ERV1 -2607 6019 5141 2447 87 0 0 chr15 45437045 45437344 -40258410 + AluY SINE Alu 1 299 -12 47252 50 15 5 chr15 45437344 45442418 -40253336 - HERV17 LTR ERV1 -3485 5141 1 3707 65 46 4 chr15 45442418 45442922 -40252832 - LTR17 LTR ERV1 0 780 256 3747 258 59 22 chr15 45443078 45444208 -40251546 + ERVL LTR ERVL 3734 4905 -859 326 305 73 17 chr15 45444216 45444393 -40251361 + L1ME4a LINE L1 5347 5533 -588 301 266 53 11 chr15 45444488 45444582 -40251172 + MIR SINE MIR 15 112 -150 315 286 59 76 chr15 45444639 45444721 -40251033 + L1ME4a LINE L1 5654 5736 -385 1970 155 13 26 chr15 45444721 45445025 -40250729 + AluSx SINE Alu 1 300 -12 315 286 59 76 chr15 45445025 45445105 -40250649 + L1ME4a LINE L1 5736 5816 -305 2288 116 0 3 chr15 45445105 45445407 -40250347 + AluSx SINE Alu 1 301 -11 315 286 59 76 chr15 45445407 45445719 -40250035 + L1ME4a LINE L1 5816 6121 0 1652 114 130 39 chr15 45445754 45445906 -40249848 - L1PA16 LINE L1 -11 6155 6018 2299 84 35 0 chr15 45445906 45446193 -40249561 - AluSg SINE Alu -13 297 1 1652 114 130 39 chr15 45446193 45446348 -40249406 - L1PA16 LINE L1 -148 6018 5820 742 143 0 0 chr15 45446349 45446454 -40249300 - AluSg/x SINE Alu -9 300 196 4587 172 23 1 chr15 45446456 45447954 -40247800 - L1PA16 LINE L1 -362 5804 4279 574 308 177 41 chr15 45449644 45450344 -40245410 + L2 LINE L2 2499 3313 0 2000 147 36 73 chr15 45450356 45450805 -40244949 - MSTB1 LTR MaLR 0 432 1 673 249 40 6 chr15 45450886 45451063 -40244691 + MIR SINE MIR 47 229 -33 277 300 60 30 chr15 45451678 45451839 -40243915 + MIR SINE MIR 19 185 -65 228 86 0 0 chr15 45451854 45451889 -40243865 + (CA)n Simple_repeat Simple_repeat 1 35 0 707 264 130 47 chr15 45452260 45452669 -40243085 + MLT1J1 LTR MaLR 4 446 0 211 228 53 18 chr15 45453087 45453144 -40242610 - MIR3 SINE MIR -51 157 99 375 278 28 7 chr15 45453782 45453926 -40241828 - MLT1K LTR MaLR -44 544 398 618 204 44 22 chr15 45453937 45454118 -40241636 + MER53 DNA DNA 1 185 -4 372 43 0 0 chr15 45454143 45454189 -40241565 + (TC)n Simple_repeat Simple_repeat 1 46 0 648 103 51 26 chr15 45454335 45454452 -40241302 + L1M1 LINE L1 14 133 -7432 * 16814 131 14 18 chr15 45454449 45457450 -40238304 + L1M1 LINE L1 1099 4111 -3454 2461 73 0 3 chr15 45457450 45457753 -40238001 + AluY SINE Alu 3 304 -7 16814 131 14 18 chr15 45457753 45458283 -40237471 + L1M1 LINE L1 4111 4614 -2951 2240 104 0 0 chr15 45458283 45458586 -40237168 - AluSc SINE Alu 0 303 1 16814 131 14 18 chr15 45458586 45458614 -40237140 + L1M1 LINE L1 4614 4641 -2924 304 294 140 15 chr15 45458850 45458986 -40236768 - L3 LINE CR1 -108 1469 1317 386 303 115 19 chr15 45459036 45459244 -40236510 - MIR SINE MIR -19 243 16 215 233 23 0 chr15 45459502 45459545 -40236209 - L2 LINE L2 -25 3247 3204 649 160 8 8 chr15 45459591 45459722 -40236032 + GA-rich Low_complexity Low_complexity 4 134 0 984 141 11 71 chr15 45459724 45459908 -40235846 + FRAM SINE Alu 1 173 -3 321 286 38 19 chr15 45459967 45460072 -40235682 + L1ME LINE L1 1958 2064 -4362 312 295 0 54 chr15 45460043 45460155 -40235599 - L1MC4 LINE L1 -1337 6705 6600 * 369 266 49 62 chr15 45460551 45460777 -40234977 + L1ME LINE L1 5599 5821 -2267 455 198 0 0 chr15 45460778 45460859 -40234895 - MER45A DNA AcHobo -1 177 97 2232 112 16 16 chr15 45460861 45461199 -40234555 + AluJb SINE Alu 1 338 0 728 300 231 47 chr15 45461332 45462768 -40232986 + L2 LINE L2 1562 3271 -1 228 279 9 72 chr15 45462768 45462879 -40232875 + L1ME LINE L1 5846 5949 -452 456 271 138 6 chr15 45463568 45463749 -40232005 - MIR SINE MIR -11 251 47 192 405 27 0 chr15 45464145 45464256 -40231498 - L3 LINE CR1 -513 1064 951 971 348 119 22 chr15 45464287 45464353 -40231401 - L3 LINE CR1 -605 972 914 2070 66 0 0 chr15 45464353 45464596 -40231158 - AluY SINE Alu -9 302 60 971 348 119 22 chr15 45464596 45465161 -40230593 - L3 LINE CR1 -663 914 280 298 88 0 105 chr15 45465625 45465673 -40230081 - AluSg1 SINE Alu 0 302 262 1735 90 0 0 chr15 45465673 45465885 -40229869 - AluSg1 SINE Alu -97 212 1 1230 146 23 104 chr15 45466605 45466698 -40229056 - L1MB3 LINE L1 -2 6181 6082 2348 109 3 10 chr15 45466698 45467010 -40228744 - AluSg SINE Alu 0 310 1 1230 146 23 104 chr15 45467010 45467224 -40228530 - L1MB3 LINE L1 -101 6082 5899 1331 155 0 19 chr15 45467225 45467438 -40228316 - AluJo SINE Alu -19 293 85 2079 152 3 0 chr15 45467438 45467781 -40227973 - L1MB3 LINE L1 -263 5908 5565 382 358 53 22 chr15 45468312 45468538 -40227216 + MIR SINE MIR 1 233 -29 503 301 59 5 chr15 45470116 45470302 -40225452 + MER91A DNA MER1_type 1 196 0 249 297 18 54 chr15 45470611 45470722 -40225032 + L2 LINE L2 3161 3267 -5 491 280 32 37 chr15 45471735 45471924 -40223830 + MIR SINE MIR 20 207 -55 389 216 68 0 chr15 45472287 45472375 -40223379 + MIR SINE MIR 42 135 -73 483 221 29 10 chr15 45473964 45474068 -40221686 + MIR SINE MIR 97 202 -60 273 252 38 35 chr15 45474214 45474394 -40221360 - MIR SINE MIR -7 255 14 240 35 0 0 chr15 45474475 45474504 -40221250 + (CA)n Simple_repeat Simple_repeat 1 29 0 282 248 99 0 chr15 45474515 45474616 -40221138 + MER112 DNA MER1_type 96 206 -54 209 337 53 0 chr15 45474693 45474788 -40220966 - MIR SINE MIR -70 192 93 328 228 26 0 chr15 45474898 45474982 -40220772 + MIR SINE MIR 60 143 -65 192 152 0 0 chr15 45475152 45475185 -40220569 + CT-rich Low_complexity Low_complexity 1 33 0 2312 95 3 3 chr15 45475185 45475481 -40220273 - AluSg SINE Alu -14 296 1 25 51 0 0 chr15 45475568 45475607 -40220147 + AT_rich Low_complexity Low_complexity 1 39 0 230 241 103 46 chr15 45475716 45475803 -40219951 + MIR SINE MIR 101 192 -70 247 241 128 28 chr15 45475843 45475948 -40219806 - MER112 DNA MER1_type -6 254 130 2251 125 0 3 chr15 45475948 45476251 -40219503 + AluSx SINE Alu 1 302 -10 247 241 128 28 chr15 45476251 45476286 -40219468 - MER112 DNA MER1_type -130 130 100 21 57 0 0 chr15 45476323 45476358 -40219396 + AT_rich Low_complexity Low_complexity 1 35 0 839 195 7 13 chr15 45476484 45476638 -40219116 - FRAM SINE Alu -23 153 1 222 304 128 32 chr15 45477231 45477356 -40218398 + L2 LINE L2 2617 2753 -561 320 309 67 51 chr15 45478108 45478483 -40217271 + L1MEd LINE L1 254 634 -5738 777 236 123 82 chr15 45478569 45479292 -40216462 + L1MEd LINE L1 749 1501 -4871 330 251 84 70 chr15 45479465 45479764 -40215990 + L1MEd LINE L1 1614 1805 -4577 331 304 73 52 chr15 45479902 45480188 -40215566 + L1MEd LINE L1 2058 2349 -4035 226 241 0 25 chr15 45480194 45480273 -40215481 + L1MEd LINE L1 2351 2427 -3955 640 179 101 0 chr15 45480276 45480449 -40215305 - MLT1F1 LTR MaLR -191 351 152 242 254 51 0 chr15 45480458 45480517 -40215237 + MIR3 SINE MIR 102 163 -45 431 268 71 0 chr15 45480856 45480968 -40214786 + MIR SINE MIR 28 147 -115 368 321 68 72 chr15 45481010 45481217 -40214537 - L2 LINE L2 -10 3262 3056 624 211 161 0 chr15 45481217 45481378 -40214376 + MER5A DNA MER1_type 2 188 -1 368 321 68 72 chr15 45481378 45481708 -40214046 - L2 LINE L2 -216 3056 2720 1177 217 124 21 chr15 45483040 45483451 -40212303 + MLT1C LTR MaLR 1 618 -8 191 32 65 0 chr15 45483980 45484011 -40211743 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1782 167 0 21 chr15 45484013 45484300 -40211454 - AluJo SINE Alu -31 281 1 266 279 53 38 chr15 45484301 45484436 -40211318 - MIR SINE MIR -61 147 30 1151 213 343 5 chr15 45484716 45485299 -40210455 + LTR50 LTR ERVL 1 780 -15 749 268 92 32 chr15 45485298 45485678 -40210076 - MLT1L LTR MaLR -179 436 34 * 330 354 65 25 chr15 45485719 45486044 -40209710 - L2 LINE L2 -118 3154 2817 3861 152 54 7 chr15 45486340 45487044 -40208710 - L1MB3 LINE L1 0 6183 5447 199 314 35 12 chr15 45487449 45487535 -40208219 + L2 LINE L2 3184 3271 -1 186 143 0 0 chr15 45487562 45487590 -40208164 - MIR SINE MIR -117 145 118 911 199 0 12 chr15 45488377 45488543 -40207211 + FRAM SINE Alu 1 163 -13 244 305 25 85 chr15 45488667 45488764 -40206990 + MIR SINE MIR 17 107 -101 2299 125 39 25 chr15 45488764 45489123 -40206631 + THE1B LTR MaLR 1 364 0 244 305 25 85 chr15 45489123 45489143 -40206611 + MIR SINE MIR 107 127 -81 504 184 83 0 chr15 45489183 45489292 -40206462 - MER20 DNA MER1_type -4 215 98 575 310 84 13 chr15 45489516 45489755 -40205999 - MIR SINE MIR 0 262 7 359 279 132 8 chr15 45489819 45489948 -40205806 - MIR3 SINE MIR -19 189 45 3467 176 107 7 chr15 45490102 45490814 -40204940 + LTR48 LTR ERV1 1 783 -4 348 188 0 0 chr15 45490942 45491011 -40204743 + GA-rich Low_complexity Low_complexity 2 70 0 724 170 11 22 chr15 45491043 45491225 -40204529 + GA-rich Low_complexity Low_complexity 1 180 0 985 208 87 27 chr15 45491228 45491560 -40204194 + LTR37A LTR ERV1 51 402 -24 2313 116 8 14 chr15 45491561 45491922 -40203832 - THE1C LTR MaLR -2 373 15 697 211 23 0 chr15 45491960 45492088 -40203666 + FLAM_A SINE Alu 1 131 -2 328 159 0 16 chr15 45492243 45492306 -40203448 - LTR37A LTR ERV1 -80 346 285 408 299 10 81 chr15 45492464 45492661 -40203093 + MIR SINE MIR 28 210 -52 321 281 24 84 chr15 45493306 45493352 -40202402 + MER5B DNA MER1_type 19 66 -112 2320 120 3 0 chr15 45493352 45493660 -40202094 + AluSx SINE Alu 1 309 -3 321 281 24 84 chr15 45493660 45493780 -40201974 + MER5B DNA MER1_type 66 175 -3 613 294 0 0 chr15 45494695 45494875 -40200879 + (CA)n Simple_repeat Simple_repeat 1 180 0 396 266 0 0 chr15 45494915 45495084 -40200670 + (CA)n Simple_repeat Simple_repeat 1 169 0 333 253 0 0 chr15 45495097 45495259 -40200495 + (CA)n Simple_repeat Simple_repeat 1 162 0 931 254 42 100 chr15 45495444 45495663 -40200091 - MER21B LTR ERV1 -167 696 466 1343 199 18 11 chr15 45495663 45495940 -40199814 - L1MB2 LINE L1 0 6171 5893 931 254 42 100 chr15 45495940 45496311 -40199443 - MER21B LTR ERV1 -397 466 140 320 177 104 31 chr15 45496479 45496585 -40199169 + MLT1C LTR MaLR 8 126 -341 210 274 0 0 chr15 45496634 45496736 -40199018 + (CA)n Simple_repeat Simple_repeat 1 102 0 930 212 67 26 chr15 45496743 45497012 -40198742 + MLT1C LTR MaLR 188 467 0 371 273 61 0 chr15 45497240 45497339 -40198415 + MLT1L LTR MaLR 138 242 -373 567 248 135 5 chr15 45497411 45497633 -40198121 + MLT1L LTR MaLR 359 609 -6 408 276 125 26 chr15 45497633 45497865 -40197889 + MER112 DNA MER1_type 1 255 -1 267 103 0 0 chr15 45497870 45497909 -40197845 + (A)n Simple_repeat Simple_repeat 1 39 0 322 216 40 0 chr15 45498376 45498450 -40197304 + MIR SINE MIR 65 141 -67 264 167 0 0 chr15 45499020 45499068 -40196686 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 1095 237 23 0 chr15 45499160 45499379 -40196375 - MER58A DNA MER1_type 0 224 1 2093 156 31 17 chr15 45499704 45500064 -40195690 + MLT1A1 LTR MaLR 1 365 0 906 247 71 53 chr15 45500654 45501034 -40194720 + MLT1J LTR MaLR 30 416 -95 239 258 194 8 chr15 45501118 45501242 -40194512 - MER103 DNA DNA 0 166 20 365 219 185 34 chr15 45501320 45501439 -40194315 + MIR3 SINE MIR 19 155 -53 311 328 32 0 chr15 45501554 45501679 -40194075 + MIR SINE MIR 36 164 -98 376 162 14 218 chr15 45502093 45502235 -40193519 + MIR3 SINE MIR 80 160 -48 722 319 72 8 chr15 45502389 45502624 -40193130 - MIR SINE MIR -11 251 2 351 308 52 76 chr15 45502756 45503006 -40192748 + L2 LINE L2 3029 3272 0 374 345 67 5 chr15 45503836 45504030 -40191724 - L2 LINE L2 -755 2559 2354 1850 144 0 17 chr15 45504223 45504515 -40191239 + AluJb SINE Alu 21 307 -5 1027 171 12 0 chr15 45504524 45504688 -40191066 + FRAM SINE Alu 1 166 0 2138 117 10 0 chr15 45504692 45504982 -40190772 + AluSg SINE Alu 3 295 -15 217 289 132 79 chr15 45504995 45505185 -40190569 - MIR SINE MIR -14 248 49 182 125 0 25 chr15 45505684 45505724 -40190030 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 332 272 254 0 chr15 45506265 45506478 -40189276 + MLT2E LTR ERVL 39 305 -323 362 307 31 8 chr15 45506633 45506760 -40188994 + MIR SINE MIR 55 184 -78 2547 81 3 0 chr15 45507143 45507452 -40188302 - AluSx SINE Alu -2 310 1 461 264 23 0 chr15 45508456 45508585 -40187169 + MER94 DNA DNA 1 132 -2 193 299 215 0 chr15 45508866 45508973 -40186781 + L3b LINE CR1 1421 1550 -33 183 250 0 0 chr15 45508945 45508985 -40186769 + MIR3 SINE MIR 144 183 -25 * 1379 246 96 28 chr15 45509144 45509274 -40186480 - L1MC4 LINE L1 0 8042 7922 2214 98 0 0 chr15 45509274 45509569 -40186185 - AluSx SINE Alu -17 295 1 1379 246 96 28 chr15 45509569 45510118 -40185636 - L1MC4 LINE L1 -120 7922 7254 1339 176 82 0 chr15 45510120 45510376 -40185378 - L1MC4 LINE L1 -953 7089 6813 990 249 153 70 chr15 45510380 45510865 -40184889 + MLT1-int LTR MaLR 711 1235 -500 457 308 105 53 chr15 45510978 45511322 -40184432 + L1ME4a LINE L1 5529 5903 -218 186 43 0 0 chr15 45511670 45511693 -40184061 + (TA)n Simple_repeat Simple_repeat 2 24 0 1920 221 47 22 chr15 45511714 45512540 -40183214 - L1ME LINE L1 -466 5700 4846 1308 201 38 15 chr15 45512516 45512855 -40182899 + L1MB8 LINE L1 4855 5201 -945 * 1766 94 8 0 chr15 45512855 45513100 -40182654 + L1PA13 LINE L1 5717 5963 -200 2047 134 3 0 chr15 45513100 45513405 -40182349 + L1PA13 LINE L1 5843 6157 -6 24 32 0 0 chr15 45513405 45513436 -40182318 + AT_rich Low_complexity Low_complexity 1 31 0 4461 153 32 53 chr15 45513436 45514442 -40181312 + L1MB8 LINE L1 5189 6178 0 428 146 24 12 chr15 45514431 45514513 -40181241 - L1ME LINE L1 -1281 4865 4783 * 1290 227 108 5 chr15 45515701 45516089 -40179665 - L1ME LINE L1 -1325 4821 4394 294 281 42 10 chr15 45516088 45516184 -40179570 + MLT1-int LTR MaLR 796 894 -477 * 317 250 10 60 chr15 45516255 45516355 -40179399 - L1ME LINE L1 -1756 4390 4296 1367 113 61 0 chr15 45516364 45516577 -40179177 - AluSg/x SINE Alu -2 310 85 1166 213 35 0 chr15 45516603 45516857 -40178897 - L1ME LINE L1 -1841 4305 4043 1766 214 103 51 chr15 45516860 45517373 -40178381 + MLT1F LTR MaLR 1 540 -2 377 287 10 0 chr15 45517375 45517476 -40178278 + MLT1F-int LTR MaLR 1 102 -1269 * 511 231 28 119 chr15 45517449 45517735 -40178019 + MLT1F-int LTR MaLR 259 518 -853 198 0 0 0 chr15 45517735 45517757 -40177997 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1913 159 0 0 chr15 45517766 45518062 -40177692 + AluJb SINE Alu 1 296 -16 706 275 87 18 chr15 45518416 45518645 -40177109 + MIR SINE MIR 17 261 -1 1981 134 0 3 chr15 45518938 45519245 -40176509 - AluSx SINE Alu -6 306 1 196 188 0 0 chr15 45519523 45519555 -40176199 - MIR SINE MIR -12 250 219 2256 82 3 0 chr15 45519603 45519895 -40175859 + AluSg SINE Alu 3 295 -15 943 237 5 5 chr15 45519919 45520117 -40175637 - MIR SINE MIR -61 201 4 811 163 0 0 chr15 45520958 45521093 -40174661 - AluJo SINE Alu -177 135 1 191 326 105 51 chr15 45521467 45521801 -40173953 - L2 LINE L2 -798 2516 2165 458 322 39 37 chr15 45521910 45522158 -40173596 + MIR SINE MIR 3 248 -14 2141 117 7 0 chr15 45522166 45522475 -40173279 + AluSp SINE Alu 1 311 -2 502 338 96 45 chr15 45522913 45523150 -40172604 + L1MC/D LINE L1 4334 4557 -1589 237 65 0 0 chr15 45523150 45523181 -40172573 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 502 338 96 45 chr15 45523181 45523194 -40172560 + L1MC/D LINE L1 4557 4568 -1578 2014 124 3 0 chr15 45523194 45523485 -40172269 - AluSq SINE Alu -21 292 1 502 338 96 45 chr15 45523485 45523899 -40171855 + L1MC/D LINE L1 4568 5033 -1113 246 260 78 57 chr15 45524132 45524324 -40171430 + L1MC/D LINE L1 5326 5521 -2287 594 264 236 0 chr15 45524326 45524538 -40171216 + MIR SINE MIR 1 262 0 504 297 71 9 chr15 45524635 45524847 -40170907 + MIR SINE MIR 38 262 0 2004 129 0 16 chr15 45525048 45525365 -40170389 - AluSx SINE Alu 0 312 1 247 186 0 0 chr15 45525637 45525680 -40170074 + L2 LINE L2 3266 3308 -5 261 302 73 0 chr15 45526133 45526229 -40169525 + MIR3 SINE MIR 100 202 -6 280 275 108 42 chr15 45526261 45526381 -40169373 + MIR SINE MIR 2 129 -133 * 355 248 152 9 chr15 45526378 45526483 -40169271 - L2 LINE L2 -1 3271 3152 308 132 38 0 chr15 45526488 45526541 -40169213 - MLT1K LTR MaLR -10 578 524 1684 147 22 32 chr15 45526758 45527070 -40168684 + AluSx SINE Alu 1 309 -3 1833 130 0 0 chr15 45527070 45527338 -40168416 + AluSx SINE Alu 27 296 -16 297 269 59 34 chr15 45527355 45527474 -40168280 - MLT1K LTR MaLR -343 245 124 293 213 27 27 chr15 45527519 45527594 -40168160 + MIR SINE MIR 159 233 -29 569 175 110 115 chr15 45528711 45528911 -40166843 + MIR SINE MIR 53 251 -11 1374 192 87 72 chr15 45529110 45529391 -40166363 - MLT1C LTR MaLR -2 465 190 1717 142 22 11 chr15 45529391 45529666 -40166088 - AluJo SINE Alu -34 278 1 1374 192 87 72 chr15 45529666 45529677 -40166077 - MLT1C LTR MaLR -277 190 181 2389 67 3 0 chr15 45529677 45529976 -40165778 - AluSp SINE Alu -13 300 1 1374 192 87 72 chr15 45529976 45530140 -40165614 - MLT1C LTR MaLR -286 181 1 316 214 197 26 chr15 45530446 45530563 -40165191 + MIR3 SINE MIR 2 138 -70 2101 128 7 0 chr15 45530617 45530977 -40164777 + AluSg SINE Alu 1 362 0 1876 88 0 4 chr15 45531467 45531741 -40164013 + AluSx SINE Alu 34 306 0 1292 111 0 0 chr15 45531741 45531921 -40163833 + AluSp SINE Alu 125 304 -9 1803 161 0 31 chr15 45532091 45532413 -40163341 + AluJo SINE Alu 1 312 0 2217 93 0 3 chr15 45533259 45533559 -40162195 + AluSx SINE Alu 1 299 -13 463 293 108 27 chr15 45534051 45534072 -40161682 + MIR SINE MIR 9 27 -235 977 182 53 19 chr15 45534072 45534281 -40161473 + MER20 DNA MER1_type 3 218 -1 463 293 108 27 chr15 45534281 45534481 -40161273 + MIR SINE MIR 27 248 -14 5405 21 0 7 chr15 45535020 45535636 -40160118 - L1PA4 LINE L1 0 6155 5544 1929 90 31 17 chr15 45536469 45536777 -40158977 + AluSx SINE Alu 1 312 0 1483 243 93 16 chr15 45536935 45537505 -40158249 - L2 LINE L2 -1 3312 2684 343 256 22 11 chr15 45537518 45537608 -40158146 - MIR SINE MIR -108 154 64 2105 75 32 0 chr15 45537624 45537906 -40157848 - AluSc SINE Alu -18 291 1 282 266 51 25 chr15 45539297 45539376 -40156378 - L2 LINE L2 -1 3271 3191 308 270 95 0 chr15 45539456 45539530 -40156224 + MIR SINE MIR 112 192 -70 254 336 64 16 chr15 45539669 45539794 -40155960 - L2 LINE L2 -14 3299 3169 729 308 13 18 chr15 45539809 45540036 -40155718 + MIR SINE MIR 9 234 -28 197 156 0 22 chr15 45540069 45540114 -40155640 + (CACCAT)n Simple_repeat Simple_repeat 2 45 0 1019 244 31 0 chr15 45540677 45540902 -40154852 - MIR SINE MIR 0 262 31 1951 128 7 3 chr15 45540908 45541205 -40154549 - AluSx SINE Alu -14 298 1 206 385 7 7 chr15 45541295 45541438 -40154316 + L2 LINE L2 2839 2981 -291 229 253 104 36 chr15 45541450 45541524 -40154230 + L1ME4a LINE L1 5837 5905 -216 2062 138 0 0 chr15 45541524 45541836 -40153918 + AluSx SINE Alu 1 312 0 229 253 104 36 chr15 45541836 45542010 -40153744 + L1ME4a LINE L1 5905 6102 -19 22 56 0 0 chr15 45542038 45542074 -40153680 + AT_rich Low_complexity Low_complexity 1 36 0 1899 88 4 0 chr15 45542099 45542374 -40153380 + AluY SINE Alu 33 308 0 405 181 0 0 chr15 45542379 45542451 -40153303 - L1MB3 LINE L1 -36 6147 6076 370 232 80 40 chr15 45542641 45542766 -40152988 + MIR SINE MIR 11 140 -122 4269 122 61 8 chr15 45542776 45543447 -40152307 + L1PA15 LINE L1 5459 6165 0 2428 211 139 11 chr15 45543616 45544171 -40151583 + MSTD-int LTR MaLR 1110 1735 0 1983 200 13 23 chr15 45544176 45544497 -40151257 + MSTD LTR MaLR 6 324 -72 2264 63 0 17 chr15 45544497 45544798 -40150956 - AluY SINE Alu -15 296 1 1983 200 13 23 chr15 45544798 45544871 -40150883 + MSTD LTR MaLR 324 396 0 2540 249 84 38 chr15 45544994 45545037 -40150717 - HAL1 LINE L1 -1471 1036 996 2557 159 2 0 chr15 45545037 45545439 -40150315 + MER57A LTR ERV1 1 403 0 2540 249 84 38 chr15 45545439 45546365 -40149389 - HAL1 LINE L1 -1511 996 22 5970 144 30 7 chr15 45546418 45547825 -40147929 - L1MA5 LINE L1 0 6300 4864 230 75 25 0 chr15 45547971 45548011 -40147743 + L2 LINE L2 3014 3054 -218 180 318 136 0 chr15 45548205 45548315 -40147439 + MIR SINE MIR 28 152 -110 800 282 92 34 chr15 45548376 45548670 -40147084 + MLT1I LTR MaLR 99 409 0 283 216 107 61 chr15 45549176 45549323 -40146431 + MIR SINE MIR 28 189 -62 550 215 37 44 chr15 45549429 45549564 -40146190 - MIR SINE MIR -106 156 23 536 226 16 16 chr15 45550286 45550410 -40145344 - MER117 DNA MER1_type -35 162 39 1627 88 0 0 chr15 45550709 45550926 -40144828 + L1PA8 LINE L1 5956 6172 0 181 185 0 0 chr15 45551118 45551172 -40144582 + L2 LINE L2 2920 2973 -299 299 267 89 7 chr15 45551800 45551946 -40143808 + L2 LINE L2 2902 3059 -213 343 215 51 0 chr15 45552535 45552614 -40143140 + MIR SINE MIR 47 129 -133 1926 151 0 0 chr15 45552617 45552922 -40142832 - AluJb SINE Alu -7 305 1 2060 113 7 7 chr15 45552949 45553259 -40142495 - AluSg SINE Alu 0 310 1 1277 182 30 47 chr15 45553283 45553531 -40142223 + L1MB3 LINE L1 5888 6132 -51 2102 104 3 7 chr15 45553531 45553839 -40141915 + AluSg SINE Alu 1 307 -3 1277 182 30 47 chr15 45553839 45553887 -40141867 + L1MB3 LINE L1 6132 6179 -4 181 276 69 35 chr15 45553936 45554023 -40141731 + MIR SINE MIR 160 249 -13 257 293 107 29 chr15 45554580 45554720 -40141034 + MIR SINE MIR 110 260 -2 306 0 0 0 chr15 45554739 45554773 -40140981 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 254 0 0 chr15 45555445 45555559 -40140195 - L1M4 LINE L1 -806 5340 5227 605 245 90 34 chr15 45555591 45555809 -40139945 - MIR SINE MIR -6 256 33 2045 125 13 0 chr15 45555930 45556233 -40139521 + AluSg SINE Alu 1 307 -3 592 271 53 22 chr15 45557687 45557912 -40137842 + MIR SINE MIR 31 262 0 226 298 10 55 chr15 45557961 45558148 -40137606 + MIR SINE MIR 26 234 -28 823 260 119 31 chr15 45558194 45558548 -40137206 + LTR16A LTR ERVL 64 448 -2 210 264 32 96 chr15 45559851 45559976 -40135778 - MIR3 SINE MIR -15 193 77 453 286 20 20 chr15 45560117 45560264 -40135490 - MIR3 SINE MIR -29 179 33 243 393 27 0 chr15 45560326 45560476 -40135278 - L2 LINE L2 -18 3254 3101 298 291 136 0 chr15 45560596 45560699 -40135055 + LTR67 LTR ERVL 101 217 -340 301 231 107 41 chr15 45560952 45561073 -40134681 - L1MC5 LINE L1 -48 7913 7785 2819 160 23 52 chr15 45561105 45561705 -40134049 - L1MC3 LINE L1 -8 7777 7195 247 309 32 0 chr15 45561707 45561801 -40133953 - MLT1F1 LTR MaLR -436 131 35 1943 152 0 3 chr15 45561806 45562138 -40133616 - AluJb SINE Alu 0 331 1 486 231 35 40 chr15 45562143 45562342 -40133412 - L1MC5 LINE L1 -183 7778 7581 576 216 34 0 chr15 45562380 45562528 -40133226 - L1MC5 LINE L1 -517 7444 7292 2179 131 10 0 chr15 45562700 45563006 -40132748 + AluSx SINE Alu 1 309 -3 320 94 19 0 chr15 45563006 45563059 -40132695 + (GGAGA)n Simple_repeat Simple_repeat 2 55 0 879 227 69 49 chr15 45563183 45563430 -40132324 + MIR SINE MIR 1 252 -10 1428 144 49 12 chr15 45563587 45563830 -40131924 + L1PA15 LINE L1 5914 6165 0 339 371 45 0 chr15 45563835 45563967 -40131787 - MIR SINE MIR -109 153 16 559 248 116 80 chr15 45563979 45564104 -40131650 - MIR SINE MIR 0 262 143 2416 90 0 7 chr15 45564104 45564414 -40131340 - AluSg SINE Alu -2 308 1 559 248 116 80 chr15 45564414 45564538 -40131216 - MIR SINE MIR -119 143 4 279 54 0 0 chr15 45565519 45565556 -40130198 + (TG)n Simple_repeat Simple_repeat 2 38 0 327 277 231 8 chr15 45565636 45565766 -40129988 - MIR SINE MIR -70 192 34 451 320 71 31 chr15 45565931 45566156 -40129598 - L2 LINE L2 -143 3129 2896 533 200 18 18 chr15 45566412 45566522 -40129232 + MIR3 SINE MIR 88 197 -11 368 263 32 0 chr15 45566612 45566707 -40129047 - L2 LINE L2 -1015 2299 2202 * 1974 238 175 25 chr15 45566705 45566993 -40128761 + L2 LINE L2 2176 2419 -894 2226 78 0 11 chr15 45566993 45567300 -40128454 + AluYa5 SINE Alu 1 304 0 1974 238 175 25 chr15 45567300 45568009 -40127745 + L2 LINE L2 2419 3308 -5 231 284 53 32 chr15 45568007 45568102 -40127652 - MIR SINE MIR -157 105 9 * 207 210 30 50 chr15 45568723 45568823 -40126931 + (CCCG)n Simple_repeat Simple_repeat 1 98 0 331 338 66 1 chr15 45569074 45569231 -40126523 + MIR3 SINE MIR 15 181 -27 387 0 0 0 chr15 45569337 45569380 -40126374 + (TG)n Simple_repeat Simple_repeat 2 44 0 393 219 65 65 chr15 45569961 45570084 -40125670 - MIR SINE MIR -135 127 5 209 179 114 67 chr15 45570083 45570194 -40125560 + MIR SINE MIR 45 161 -72 * 245 257 19 19 chr15 45570401 45570506 -40125248 + G-rich Low_complexity Low_complexity 3 107 0 227 262 0 93 chr15 45570641 45570813 -40124941 + G-rich Low_complexity Low_complexity 3 158 0 573 280 34 6 chr15 45571151 45571326 -40124428 - MIR3 SINE MIR -28 180 1 2142 115 42 0 chr15 45571365 45571652 -40124102 + AluSx SINE Alu 1 299 -13 1760 153 3 17 chr15 45571659 45571970 -40123784 + AluJo SINE Alu 1 307 0 424 200 100 39 chr15 45574499 45574629 -40121125 + MIR3 SINE MIR 10 147 -61 1167 263 50 21 chr15 45574641 45574979 -40120775 - LTR16C LTR ERVL 0 491 144 204 97 0 0 chr15 45575428 45575459 -40120295 + (T)n Simple_repeat Simple_repeat 1 31 0 221 338 65 65 chr15 45575486 45575640 -40120114 + L2 LINE L2 2909 3062 -210 1388 132 32 147 chr15 45575657 45576030 -40119724 + AluJb SINE Alu 1 334 0 513 205 0 32 chr15 45576030 45576215 -40119539 + GA-rich Low_complexity Low_complexity 2 180 0 218 190 52 52 chr15 45576420 45576478 -40119276 - L2 LINE L2 -9 3304 3247 379 283 75 33 chr15 45576545 45576665 -40119089 - MIR3 SINE MIR -13 195 71 363 44 0 0 chr15 45577177 45577222 -40118532 + (TG)n Simple_repeat Simple_repeat 2 46 0 190 294 47 35 chr15 45577720 45577805 -40117949 + MIR SINE MIR 82 167 -95 395 303 115 11 chr15 45577824 45578062 -40117692 - MIR SINE MIR 0 262 6 1923 171 0 0 chr15 45578063 45578355 -40117399 - AluJb SINE Alu -20 292 1 324 273 112 35 chr15 45578527 45578603 -40117151 + MIR SINE MIR 95 164 -98 2516 88 0 0 chr15 45578603 45578911 -40116843 - AluSp SINE Alu -5 308 1 324 273 112 35 chr15 45578911 45578977 -40116777 + MIR SINE MIR 164 248 -14 1674 174 65 7 chr15 45579756 45579920 -40115834 - AluJb SINE Alu -1 311 158 423 0 0 0 chr15 45579920 45579967 -40115787 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 2330 90 0 0 chr15 45579967 45580246 -40115508 - AluSc SINE Alu -30 279 1 1674 174 65 7 chr15 45580246 45580373 -40115381 - AluJb SINE Alu -153 159 2 2641 230 89 22 chr15 45580534 45581467 -40114287 - L1ME3 LINE L1 -1 6161 5151 2217 100 6 26 chr15 45581467 45581778 -40113976 - AluSx SINE Alu -7 305 1 2641 230 89 22 chr15 45581778 45581910 -40113844 - L1ME3 LINE L1 -1011 5151 5029 564 299 61 42 chr15 45581936 45582254 -40113500 - L1ME3A LINE L1 -156 5965 5642 1852 140 3 41 chr15 45582586 45582878 -40112876 + AluJb SINE Alu 11 291 -21 260 347 57 7 chr15 45583163 45583310 -40112444 - MIR SINE MIR -62 146 16 348 248 44 100 chr15 45583411 45583612 -40112142 - MIR3 SINE MIR -45 163 7 180 344 16 0 chr15 45584597 45584658 -40111096 - MIR SINE MIR -114 94 33 226 229 0 0 chr15 45585343 45585391 -40110363 + (CA)n Simple_repeat Simple_repeat 1 48 0 223 250 0 0 chr15 45585409 45585453 -40110301 + G-rich Low_complexity Low_complexity 4 47 0 394 263 60 15 chr15 45586055 45586188 -40109566 - L2 LINE L2 -1 3271 3133 208 311 49 16 chr15 45586691 45586752 -40109002 - MIR3 SINE MIR -50 158 96 1167 67 0 0 chr15 45586857 45586992 -40108762 + AluSq/x SINE Alu 1 135 -178 1737 132 0 8 chr15 45586992 45587235 -40108519 + AluSg SINE Alu 1 241 -69 350 261 90 18 chr15 45587567 45587678 -40108076 + MIR SINE MIR 17 135 -73 2619 52 7 0 chr15 45587678 45588019 -40107735 - AluY SINE Alu 0 343 1 1912 118 71 0 chr15 45588022 45588302 -40107452 - AluSx SINE Alu -12 300 1 314 293 86 29 chr15 45588325 45588465 -40107289 - L2 LINE L2 -4 3309 3162 193 311 42 34 chr15 45588724 45588843 -40106911 - L2 LINE L2 -433 2881 2762 845 202 67 0 chr15 45588843 45589051 -40106703 + MER33 DNA MER1_type 1 222 -102 2382 91 0 0 chr15 45589051 45589347 -40106407 + AluSg SINE Alu 2 297 -13 198 0 0 0 chr15 45589347 45589369 -40106385 + (TA)n Simple_repeat Simple_repeat 2 23 0 438 249 158 34 chr15 45589469 45589678 -40106076 - MIR SINE MIR -18 244 10 530 273 30 64 chr15 45589729 45589833 -40105921 - L1ME4a LINE L1 -239 5882 5776 1826 156 13 23 chr15 45589833 45590134 -40105620 - AluJo SINE Alu -14 298 1 530 273 30 64 chr15 45590134 45590293 -40105461 - L1ME4a LINE L1 -345 5776 5628 636 284 243 23 chr15 45590614 45591145 -40104609 + L2 LINE L2 2092 2739 -575 391 196 29 0 chr15 45591182 45591284 -40104470 - Charlie5 DNA MER1_type -27 2585 2481 264 59 0 0 chr15 45591284 45591318 -40104436 + (TA)n Simple_repeat Simple_repeat 1 34 0 427 282 27 0 chr15 45591620 45591730 -40104024 + MIR3 SINE MIR 70 182 -26 1001 228 52 58 chr15 45592444 45592652 -40103102 - L2 LINE L2 -1 3312 3105 2204 139 0 0 chr15 45592652 45592962 -40102792 + AluSx SINE Alu 1 310 -2 1001 228 52 58 chr15 45592962 45593078 -40102676 - L2 LINE L2 -208 3105 2990 247 294 24 0 chr15 45593123 45593208 -40102546 - MLT1L LTR MaLR -363 252 166 295 346 10 0 chr15 45593342 45593443 -40102311 + MIR SINE MIR 19 120 -88 1374 199 108 39 chr15 45593626 45594013 -40101741 + MER96B DNA MER1_type 1 414 -3 612 282 41 9 chr15 45594772 45594986 -40100768 + MIR SINE MIR 27 248 -14 340 341 38 23 chr15 45595042 45595174 -40100580 + MIR SINE MIR 16 149 -59 726 259 37 103 chr15 45595176 45595717 -40100037 + MLT1J LTR MaLR 5 509 -2 256 224 0 17 chr15 45596098 45596156 -40099598 + MIR SINE MIR 82 138 -70 5317 78 19 3 chr15 45596303 45596983 -40098771 + LTR8 LTR ERV1 1 691 0 4721 87 24 3 chr15 45596983 45597663 -40098091 + HUERS-P1 LTR ERV1 1 694 -5569 29288 60 22 8 chr15 45597766 45598482 -40097272 + HUERS-P1 LTR ERV1 2215 2919 -3344 329 0 24 0 chr15 45598482 45598523 -40097231 + (TG)n Simple_repeat Simple_repeat 1 42 0 29288 60 22 8 chr15 45598523 45599403 -40096351 + HUERS-P1 LTR ERV1 2919 3785 -2478 2287 94 0 0 chr15 45599403 45599691 -40096063 + AluY SINE Alu 5 292 -19 29288 60 22 8 chr15 45599691 45600484 -40095270 + HUERS-P1 LTR ERV1 3785 4565 -1698 2229 112 3 0 chr15 45600484 45600769 -40094985 - AluSq SINE Alu -27 286 1 29288 60 22 8 chr15 45600769 45602370 -40093384 + HUERS-P1 LTR ERV1 4565 6263 0 4771 64 19 0 chr15 45602391 45603015 -40092739 + LTR8 LTR ERV1 56 691 0 342 313 54 9 chr15 45603020 45603132 -40092622 + MIR SINE MIR 34 150 -58 2169 104 6 25 chr15 45603135 45603452 -40092302 + AluY SINE Alu 1 311 0 1847 110 0 0 chr15 45604109 45604346 -40091408 - AluSc SINE Alu -72 237 1 2521 172 31 38 chr15 45604425 45604653 -40091101 - L1MB3 LINE L1 0 6183 5955 1878 137 33 33 chr15 45604653 45604959 -40090795 - AluSx SINE Alu -6 306 1 2521 172 31 38 chr15 45604959 45605093 -40090661 - L1MB3 LINE L1 -228 5955 5822 2261 60 46 0 chr15 45605093 45605377 -40090377 + AluY SINE Alu 2 298 -13 2521 172 31 38 chr15 45605377 45605560 -40090194 - L1MB3 LINE L1 -361 5822 5641 2220 116 3 3 chr15 45605568 45605871 -40089883 - AluSq SINE Alu -10 303 1 29 28 0 0 chr15 45605912 45605948 -40089806 + AT_rich Low_complexity Low_complexity 1 36 0 2104 128 7 0 chr15 45607405 45607701 -40088053 - AluSx SINE Alu -14 298 1 3779 162 21 58 chr15 45607710 45608097 -40087657 - L1MB3 LINE L1 -2 6181 5781 2206 96 3 0 chr15 45608097 45608399 -40087355 + AluSq SINE Alu 1 303 0 3779 162 21 58 chr15 45608399 45608749 -40087005 - L1MB3 LINE L1 -402 5781 5471 2311 95 3 7 chr15 45608749 45609055 -40086699 + AluSp SINE Alu 1 305 -8 3779 162 21 58 chr15 45609055 45609107 -40086647 - L1MB3 LINE L1 -712 5471 5419 361 322 46 35 chr15 45609129 45609303 -40086451 - L1ME3A LINE L1 -218 5952 5777 727 233 79 10 chr15 45609311 45609513 -40086241 - MIR SINE MIR -16 246 31 196 133 50 100 chr15 45610660 45610720 -40085034 - MIR SINE MIR -187 75 19 209 212 0 91 chr15 45611022 45611088 -40084666 - MIR SINE MIR -79 183 124 342 278 233 40 chr15 45611230 45611406 -40084348 + MIR SINE MIR 49 258 -4 201 207 12 37 chr15 45612801 45612883 -40082871 + G-rich Low_complexity Low_complexity 2 81 0 21 71 0 0 chr15 45612932 45612974 -40082780 + GC_rich Low_complexity Low_complexity 1 42 0 206 143 0 24 chr15 45614035 45614077 -40081677 + (CCCCCG)n Simple_repeat Simple_repeat 1 41 0 188 121 0 30 chr15 45615138 45615171 -40080583 + MIR SINE MIR 39 70 -138 225 339 79 31 chr15 45616247 45616374 -40079380 + L2 LINE L2 3180 3312 -1 2090 92 14 3 chr15 45616846 45617129 -40078625 + AluSg SINE Alu 6 291 -19 211 143 71 0 chr15 45618609 45618651 -40077103 + L2 LINE L2 3178 3222 -91 530 139 0 0 chr15 45618746 45618825 -40076929 + MADE1 DNA Mariner 2 80 0 258 318 161 1 chr15 45618938 45619264 -40076490 + MLT1L LTR MaLR 204 607 -8 219 211 0 0 chr15 45620495 45620533 -40075221 + MIR SINE MIR 74 111 -97 492 217 14 84 chr15 45620638 45620781 -40074973 - MER94 DNA DNA -1 133 1 257 303 74 16 chr15 45620809 45620931 -40074823 + MIR SINE MIR 55 183 -79 2335 97 3 0 chr15 45621477 45621777 -40073977 + AluSp SINE Alu 1 301 -12 544 212 23 23 chr15 45621861 45621993 -40073761 - MIR SINE MIR -84 178 47 257 303 45 22 chr15 45622552 45622641 -40073113 - L2 LINE L2 -59 3213 3123 2405 53 0 7 chr15 45623090 45623397 -40072357 + AluY SINE Alu 1 305 0 328 295 9 54 chr15 45624503 45624615 -40071139 - L2 LINE L2 -27 3245 3139 201 74 0 0 chr15 45624735 45624762 -40070992 + (TC)n Simple_repeat Simple_repeat 2 28 0 559 200 87 60 chr15 45625058 45625208 -40070546 + MIR3 SINE MIR 34 187 -21 2107 102 7 0 chr15 45625226 45625534 -40070220 - AluSq SINE Alu 0 310 1 1558 79 0 0 chr15 45626255 45626445 -40069309 - AluSg/x SINE Alu -16 296 107 570 299 41 57 chr15 45627036 45627194 -40068560 + MIR SINE MIR 20 174 -88 2322 115 0 0 chr15 45627194 45627490 -40068264 + AluSx SINE Alu 1 296 -16 570 299 41 57 chr15 45627490 45627575 -40068179 + MIR SINE MIR 174 259 -3 1352 284 108 33 chr15 45628152 45628765 -40066989 + MER115 DNA AcHobo 5 663 -30 351 44 0 0 chr15 45628781 45628826 -40066928 + (TATG)n Simple_repeat Simple_repeat 2 46 0 259 273 189 22 chr15 45629190 45629417 -40066337 - L2 LINE L2 -181 3091 2827 280 270 14 14 chr15 45631456 45631530 -40064224 + MIR3 SINE MIR 81 154 -54 2519 69 0 19 chr15 45631575 45631892 -40063862 - AluY SINE Alu 0 311 1 264 244 118 109 chr15 45632062 45632291 -40063463 - L2 LINE L2 -5 3267 3037 542 301 62 6 chr15 45632765 45632941 -40062813 + MIR3 SINE MIR 15 200 -8 428 245 172 33 chr15 45633139 45633290 -40062464 + MER5B DNA MER1_type 5 176 -2 321 26 0 0 chr15 45633380 45633418 -40062336 + (CA)n Simple_repeat Simple_repeat 1 38 0 2275 94 28 0 chr15 45634406 45634694 -40061060 - AluSq SINE Alu -12 301 6 2292 91 3 0 chr15 45636159 45636446 -40059308 + AluSg SINE Alu 1 288 -22 265 305 130 30 chr15 45637246 45637377 -40058377 - MIR SINE MIR -50 212 69 229 274 147 59 chr15 45637758 45637860 -40057894 + MIR SINE MIR 17 127 -81 383 193 11 11 chr15 45637926 45638014 -40057740 - MIR3 SINE MIR -30 178 91 693 239 67 36 chr15 45639304 45639756 -40055998 - LTR33A LTR ERVL -6 517 7 864 212 22 11 chr15 45639919 45640103 -40055651 + MER5A DNA MER1_type 1 186 -3 208 253 126 23 chr15 45640266 45640353 -40055401 + MIR SINE MIR 103 198 -64 248 259 62 12 chr15 45640679 45640760 -40054994 + MIR SINE MIR 56 140 -122 227 333 25 2 chr15 45641418 45641519 -40054235 - MIR3 SINE MIR -46 162 57 358 284 130 19 chr15 45642449 45642611 -40053143 + MIR SINE MIR 77 256 -6 4634 179 73 36 chr15 45642958 45643069 -40052685 + MER45B DNA AcHobo 1 106 -1475 1940 114 15 11 chr15 45643069 45643342 -40052412 - AluSq SINE Alu -39 274 1 4634 179 73 36 chr15 45643342 45644233 -40051521 + MER45B DNA AcHobo 106 1040 0 1544 166 3 99 chr15 45644712 45645056 -40050698 - AluJb SINE Alu -1 311 1 462 276 24 16 chr15 45645060 45645187 -40050567 + MIR SINE MIR 65 192 -70 227 310 68 45 chr15 45645469 45645659 -40050095 + MIR SINE MIR 51 241 -21 252 189 87 36 chr15 45645689 45645778 -40049976 + MIR3 SINE MIR 68 156 -52 294 106 0 0 chr15 45645827 45645874 -40049880 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1631 170 50 29 chr15 45647372 45647411 -40048343 + L1MB5 LINE L1 5790 5827 -347 2392 96 3 0 chr15 45647411 45647712 -40048042 + AluSq SINE Alu 1 302 -11 1631 170 50 29 chr15 45647712 45648014 -40047740 + L1MB5 LINE L1 5827 6138 -36 213 208 19 47 chr15 45648039 45648145 -40047609 + (TATAA)n Simple_repeat Simple_repeat 3 105 0 342 282 77 8 chr15 45648291 45648408 -40047346 - MIR3 SINE MIR -49 159 35 305 302 7 60 chr15 45649217 45649366 -40046388 + MIR SINE MIR 72 212 -50 245 29 29 0 chr15 45649759 45649793 -40045961 + (TG)n Simple_repeat Simple_repeat 1 35 0 200 222 22 0 chr15 45650545 45650590 -40045164 + L2 LINE L2 3268 3313 0 310 267 78 0 chr15 45651699 45651789 -40043965 + L2 LINE L2 3176 3272 0 523 227 109 8 chr15 45652638 45652766 -40042988 + MIR3 SINE MIR 46 186 -22 614 331 107 6 chr15 45653436 45653799 -40041955 + L2 LINE L2 2385 2784 -530 372 266 133 8 chr15 45653849 45653977 -40041777 + L2 LINE L2 2916 3059 -213 303 247 11 56 chr15 45654578 45654667 -40041087 + L2 LINE L2 3187 3271 -1 255 297 16 0 chr15 45656580 45656644 -40039110 + L2 LINE L2 3249 3313 0 372 227 10 52 chr15 45656824 45656921 -40038833 + MIR3 SINE MIR 67 159 -49 198 229 62 0 chr15 45658018 45658066 -40037688 + MIR SINE MIR 150 200 -62 5099 159 29 32 chr15 45658282 45659292 -40036462 - L1MB7 LINE L1 0 6359 5347 2124 140 3 0 chr15 45659292 45659599 -40036155 - AluSx SINE Alu -4 308 1 5099 159 29 32 chr15 45659599 45659649 -40036105 - L1MB7 LINE L1 -1012 5347 5298 2375 93 0 34 chr15 45659649 45659973 -40035781 - AluSq SINE Alu 0 313 1 5099 159 29 32 chr15 45659973 45660558 -40035196 - L1MB7 LINE L1 -1061 5298 4741 264 59 0 0 chr15 45660574 45660608 -40035146 + (TA)n Simple_repeat Simple_repeat 2 35 0 2343 71 0 24 chr15 45660608 45660902 -40034852 - AluY SINE Alu -24 287 1 251 319 86 17 chr15 45661316 45661432 -40034322 + L2 LINE L2 3141 3264 -8 310 301 46 26 chr15 45662070 45662231 -40033523 - MIR3 SINE MIR -60 148 1 181 300 0 0 chr15 45663117 45663157 -40032597 + MIR SINE MIR 110 149 -59 230 188 217 0 chr15 45663224 45663293 -40032461 - L2 LINE L2 0 3313 3230 326 169 60 72 chr15 45664891 45664974 -40030780 - MIR3 SINE MIR -19 189 108 2268 112 0 0 chr15 45665322 45665617 -40030137 + AluSx SINE Alu 1 295 -17 244 318 0 35 chr15 45666260 45666345 -40029409 + L2 LINE L2 3003 3084 -188 204 246 16 49 chr15 45666390 45666451 -40029303 + L2 LINE L2 3201 3259 -13 584 293 163 31 chr15 45666499 45667014 -40028740 - L2 LINE L2 -1018 2296 1714 2172 130 0 0 chr15 45667316 45667609 -40028145 - AluJb SINE Alu -19 293 1 1389 113 54 14 chr15 45668267 45668488 -40027266 - MER30 DNA MER1_type 0 230 1 378 279 0 50 chr15 45669348 45669422 -40026332 - MIR SINE MIR -28 234 169 734 211 80 30 chr15 45669422 45669621 -40026133 - MER3 DNA MER1_type 0 209 1 378 279 0 50 chr15 45669621 45669686 -40026068 - MIR SINE MIR -93 169 102 193 147 0 29 chr15 45669713 45669747 -40026007 - MIR SINE MIR -57 151 119 282 294 119 32 chr15 45670014 45670140 -40025614 - MIR3 SINE MIR -19 189 53 525 311 66 42 chr15 45670249 45670419 -40025335 + MIR SINE MIR 14 178 -84 1874 131 29 39 chr15 45670419 45670725 -40025029 + AluJo SINE Alu 3 305 -7 2313 105 0 10 chr15 45670727 45671032 -40024722 + AluSq SINE Alu 1 302 -11 525 311 66 42 chr15 45671032 45671099 -40024655 + MIR SINE MIR 178 260 -2 1801 181 0 13 chr15 45671487 45671802 -40023952 - AluJo SINE Alu -1 311 1 242 252 93 50 chr15 45673760 45673899 -40021855 - MIR3 SINE MIR -63 145 1 442 302 13 38 chr15 45674091 45674250 -40021504 + L2 LINE L2 3114 3268 -4 567 269 152 15 chr15 45675819 45676016 -40019738 + MIR SINE MIR 13 236 -26 1746 151 7 30 chr15 45676090 45676388 -40019366 - AluJo SINE Alu -21 291 1 286 286 105 19 chr15 45676488 45676593 -40019161 - MIR SINE MIR -65 143 30 1769 163 35 0 chr15 45676843 45677156 -40018598 + MER44D DNA MER2_type 3 596 -13 1089 186 68 15 chr15 45677172 45677461 -40018293 - MER33 DNA MER1_type -40 284 1 192 231 96 0 chr15 45677515 45677567 -40018187 - MIR SINE MIR -118 90 34 707 330 38 4 chr15 45677582 45677818 -40017936 - MIR SINE MIR -6 256 13 1959 127 98 0 chr15 45677841 45678148 -40017606 + MER1B DNA MER1_type 1 337 0 310 252 31 47 chr15 45678755 45678882 -40016872 - MIR3 SINE MIR -83 125 1 216 287 172 0 chr15 45679091 45679213 -40016541 - MIR SINE MIR -118 144 2 255 306 24 12 chr15 45679611 45679696 -40016058 - MIR3 SINE MIR -12 196 111 209 279 62 85 chr15 45680111 45680240 -40015514 + MIR SINE MIR 67 192 -70 273 278 275 23 chr15 45680328 45680677 -40015077 - L3 LINE CR1 -142 1435 999 620 266 46 17 chr15 45681289 45681462 -40014292 - MIR3 SINE MIR -23 185 8 298 307 137 15 chr15 45682285 45682490 -40013264 - MIR SINE MIR 0 262 33 295 265 90 69 chr15 45682856 45683045 -40012709 + MIR SINE MIR 70 262 0 2359 95 10 7 chr15 45683839 45684145 -40011609 - AluSx SINE Alu -5 307 1 2237 127 3 13 chr15 45687352 45687660 -40008094 + AluSp SINE Alu 1 305 -8 370 261 11 0 chr15 45688127 45688219 -40007535 + MER94 DNA DNA 42 134 0 860 225 113 36 chr15 45688298 45688600 -40007154 - MER102a DNA MER1_type -3 327 3 228 255 0 0 chr15 45688737 45688788 -40006966 - L2 LINE L2 -2 3311 3261 269 299 52 10 chr15 45689100 45689197 -40006557 + L3 LINE CR1 1297 1397 -180 386 267 50 8 chr15 45689543 45689663 -40006091 - MIR SINE MIR -137 125 1 1988 147 3 0 chr15 45690959 45691251 -40004503 - AluSx SINE Alu -19 293 1 807 99 6 163 chr15 45691258 45691430 -40004324 - AluSg/x SINE Alu -10 300 156 320 179 0 0 chr15 45691430 45691486 -40004268 - Alu SINE Alu -246 56 1 713 186 43 12 chr15 45691494 45691655 -40004099 - L1MA10 LINE L1 0 6334 6169 647 204 39 19 chr15 45691683 45691889 -40003865 - L1ME1 LINE L1 -178 5988 5779 510 206 112 22 chr15 45692678 45692833 -40002921 - MIR3 SINE MIR -5 203 32 233 343 49 14 chr15 45693223 45693366 -40002388 - MIR3 SINE MIR -60 148 1 330 290 80 29 chr15 45693387 45693525 -40002229 + MIR SINE MIR 1 145 -117 184 289 0 0 chr15 45693801 45693846 -40001908 + L2 LINE L2 3263 3307 -6 211 324 56 19 chr15 45695004 45695112 -40000642 + MIR3 SINE MIR 90 201 -7 195 42 0 0 chr15 45697994 45698018 -39997736 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr15 45698316 45698337 -39997417 + (T)n Simple_repeat Simple_repeat 1 21 0 2459 84 0 10 chr15 45698365 45698676 -39997078 - AluSx SINE Alu -4 308 1 2306 90 0 0 chr15 45698840 45699146 -39996608 - AluSg SINE Alu 0 308 3 1085 92 41 26 chr15 45699201 45699396 -39996358 - L1MA5A LINE L1 -2 6295 6098 960 162 6 0 chr15 45699525 45699704 -39996050 - L1MA5A LINE L1 -160 6137 5958 421 328 99 5 chr15 45700496 45700688 -39995066 + MIR SINE MIR 2 211 -51 2035 113 29 0 chr15 45700727 45701001 -39994753 + AluSq SINE Alu 1 282 -31 867 181 23 74 chr15 45701094 45701309 -39994445 + MER20 DNA MER1_type 16 219 0 23 0 0 0 chr15 45702328 45702351 -39993403 + AT_rich Low_complexity Low_complexity 1 23 0 403 244 37 44 chr15 45702533 45702668 -39993086 + MIR3 SINE MIR 60 193 -15 2339 81 14 3 chr15 45703225 45703520 -39992234 + AluSq SINE Alu 1 298 -15 206 294 37 55 chr15 45703993 45704102 -39991652 + MIR SINE MIR 48 154 -108 322 266 46 18 chr15 45704139 45704248 -39991506 - MLT1H LTR MaLR 0 549 438 535 273 7 7 chr15 45704396 45704550 -39991204 - MLT1H LTR MaLR -366 183 30 195 161 0 0 chr15 45704569 45704600 -39991154 + L2 LINE L2 3210 3240 -32 262 277 24 12 chr15 45704759 45704842 -39990912 + L2 LINE L2 3230 3313 0 404 219 0 0 chr15 45704931 45705004 -39990750 + MIR SINE MIR 46 118 -144 250 297 22 11 chr15 45706076 45706167 -39989587 + MIR SINE MIR 23 114 -94 22 35 0 0 chr15 45706548 45706577 -39989177 + AT_rich Low_complexity Low_complexity 1 29 0 2131 142 0 0 chr15 45706595 45706890 -39988864 - AluJb SINE Alu -17 295 1 1739 197 70 103 chr15 45707003 45707592 -39988162 - L1ME1 LINE L1 -1 6165 5601 688 106 8 49 chr15 45707592 45707715 -39988039 + L1MA4 LINE L1 6176 6293 -7 1739 197 70 103 chr15 45707715 45707815 -39987939 - L1ME1 LINE L1 -565 5601 5499 876 81 0 0 chr15 45707916 45708053 -39987701 + AluY SINE Alu 176 312 0 360 43 0 0 chr15 45708207 45708253 -39987501 + (TG)n Simple_repeat Simple_repeat 2 47 0 1656 148 0 44 chr15 45708254 45708525 -39987229 - AluJb SINE Alu -27 285 27 2478 77 3 3 chr15 45708725 45709036 -39986718 + AluY SINE Alu 1 311 0 1540 226 110 10 chr15 45709057 45709575 -39986179 - L1ME1 LINE L1 -846 5300 4731 307 287 43 9 chr15 45710040 45710155 -39985599 - MIR SINE MIR -117 145 27 562 303 48 63 chr15 45710670 45711181 -39984573 + L2 LINE L2 2637 3154 -159 387 0 0 0 chr15 45711181 45711224 -39984530 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2062 84 0 0 chr15 45711224 45711474 -39984280 - AluSx SINE Alu -28 284 35 562 303 48 63 chr15 45711474 45711638 -39984116 + L2 LINE L2 3152 3307 -6 461 156 62 10 chr15 45711834 45711930 -39983824 - MER5A DNA MER1_type -78 111 11 1111 163 0 0 chr15 45712031 45712203 -39983551 + AluJb SINE Alu 141 312 0 2535 70 0 13 chr15 45712264 45712579 -39983175 + AluY SINE Alu 1 311 0 187 338 12 0 chr15 45714675 45714755 -39980999 - L2 LINE L2 -213 3059 2979 229 204 19 19 chr15 45715146 45715200 -39980554 + CT-rich Low_complexity Low_complexity 2 55 0 315 258 120 53 chr15 45715348 45715557 -39980197 - L2 LINE L2 -184 3088 2866 2002 100 0 4 chr15 45716207 45716466 -39979288 - AluSx SINE Alu -31 281 24 209 279 13 25 chr15 45716872 45716951 -39978803 + CT-rich Low_complexity Low_complexity 5 82 0 464 330 44 22 chr15 45717265 45717447 -39978307 - MIR SINE MIR -7 255 70 1411 159 116 25 chr15 45717772 45718048 -39977706 - AluJo SINE Alu -11 301 1 265 261 36 81 chr15 45718567 45718678 -39977076 - MIR3 SINE MIR 0 208 103 341 313 117 32 chr15 45719324 45719640 -39976114 - L1ME4a LINE L1 -49 6072 5730 583 288 93 18 chr15 45720840 45721066 -39974688 - MIR SINE MIR -10 252 10 225 0 0 0 chr15 45722014 45722039 -39973715 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 194 257 189 14 chr15 45722264 45722338 -39973416 - L2 LINE L2 -1009 2305 2219 2221 106 0 3 chr15 45725708 45726001 -39969753 - AluSx SINE Alu -12 300 9 254 298 43 0 chr15 45726791 45726885 -39968869 - MIR3 SINE MIR -46 162 65 208 303 45 11 chr15 45727395 45727484 -39968270 - MIR SINE MIR -132 130 39 1050 163 4 100 chr15 45727532 45727771 -39967983 + MER20 DNA MER1_type 1 216 -3 324 0 0 0 chr15 45729258 45729294 -39966460 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2365 84 14 3 chr15 45730075 45730372 -39965382 - AluSq SINE Alu -13 300 1 717 200 0 8 chr15 45731134 45731254 -39964500 - FLAM_A SINE Alu -14 119 1 25 0 0 0 chr15 45731261 45731286 -39964468 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr15 45731286 45731318 -39964436 + (TA)n Simple_repeat Simple_repeat 2 33 0 2267 97 0 32 chr15 45731318 45731629 -39964125 - AluSx SINE Alu -11 301 1 264 265 67 83 chr15 45732345 45732386 -39963368 - MIR SINE MIR -27 181 141 1734 180 10 26 chr15 45732386 45732691 -39963063 - AluJo SINE Alu -12 300 1 264 265 67 83 chr15 45732691 45732792 -39962962 - MIR SINE MIR -67 141 41 393 294 159 59 chr15 45733430 45733801 -39961953 - L2 LINE L2 0 3272 2865 392 244 8 101 chr15 45734331 45734523 -39961231 - MIR SINE MIR -35 173 1 363 204 165 0 chr15 45734685 45734788 -39960966 - MIR3 SINE MIR -11 197 78 454 272 86 0 chr15 45736035 45736190 -39959564 - MIR SINE MIR -70 138 22 2072 114 50 3 chr15 45736424 45736722 -39959032 - AluSx SINE Alu 0 312 1 201 94 0 0 chr15 45739310 45739342 -39956412 + (CCCCG)n Simple_repeat Simple_repeat 1 32 0 2236 103 23 19 chr15 45744166 45744476 -39951278 + AluSx SINE Alu 1 311 -1 433 306 190 30 chr15 45745049 45745581 -39950173 + L2 LINE L2 2033 2649 -665 622 171 189 37 chr15 45746648 45746812 -39948942 + MER5A DNA MER1_type 1 189 0 23 0 0 0 chr15 45748677 45748700 -39947054 + AT_rich Low_complexity Low_complexity 1 23 0 203 214 0 48 chr15 45748855 45748897 -39946857 - L2 LINE L2 -23 3249 3210 582 250 102 0 chr15 45751296 45751512 -39944242 + L1ME LINE L1 5576 5813 -308 485 200 66 52 chr15 45752615 45752789 -39942965 - MIR SINE MIR -65 143 5 555 309 54 25 chr15 45753287 45753491 -39942263 - MIR SINE MIR -48 214 5 1002 305 118 11 chr15 45753621 45754096 -39941658 - L2 LINE L2 -996 2318 1793 5824 173 68 77 chr15 45754170 45755186 -39940568 - L1MC4a LINE L1 -18 7790 6790 2297 84 3 26 chr15 45755186 45755497 -39940257 + AluSp SINE Alu 1 304 -9 5824 173 68 77 chr15 45755497 45756031 -39939723 - L1MC4a LINE L1 -1018 6790 6253 248 252 56 56 chr15 45756352 45756459 -39939295 + MIR SINE MIR 48 154 -108 192 237 0 0 chr15 45757380 45757418 -39938336 + L2 LINE L2 3190 3227 -86 1671 151 7 47 chr15 45757952 45758251 -39937503 - AluJo SINE Alu -25 287 1 2389 97 0 3 chr15 45758521 45758829 -39936925 + AluSg SINE Alu 1 307 -3 380 279 0 86 chr15 45758930 45759127 -39936627 + MER5A DNA MER1_type 10 189 0 2477 60 0 7 chr15 45760169 45760467 -39935287 - AluY SINE Alu -15 296 1 285 313 72 12 chr15 45760714 45760797 -39934957 + MIR SINE MIR 16 103 -105 367 355 77 18 chr15 45761903 45762123 -39933631 + MIR SINE MIR 20 252 -10 * 392 206 59 210 chr15 45762057 45762350 -39933404 - MIR SINE MIR 0 262 12 498 209 285 12 chr15 45762699 45762871 -39932883 - MER20 DNA MER1_type 0 219 1 2414 58 0 0 chr15 45762932 45763225 -39932529 - AluY SINE Alu -17 294 2 208 333 50 25 chr15 45763481 45763601 -39932153 + L2 LINE L2 3184 3306 -7 260 100 57 14 chr15 45764374 45764444 -39931310 - L1ME4a LINE L1 -2 6119 6047 2329 102 0 0 chr15 45764448 45764753 -39931001 + AluSg SINE Alu 1 305 -5 259 326 10 0 chr15 45765095 45765193 -39930561 + AluSp/q SINE Alu 205 303 0 234 204 92 31 chr15 45765534 45765632 -39930122 + MARNA DNA Mariner 394 497 -89 260 270 140 0 chr15 45765992 45766092 -39929662 - MIR3 SINE MIR -52 156 43 2310 98 3 0 chr15 45766268 45766565 -39929189 - AluSg SINE Alu -11 299 2 257 0 30 0 chr15 45767170 45767203 -39928551 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 713 181 23 40 chr15 45767867 45768092 -39927662 - MER106B DNA MER1_type 0 1059 12 1923 124 34 0 chr15 45768107 45768430 -39927324 + L1PA16 LINE L1 5707 6040 -126 28 0 0 0 chr15 45768471 45768499 -39927255 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr15 45768772 45768800 -39926954 + AT_rich Low_complexity Low_complexity 1 28 0 431 320 0 8 chr15 45769174 45769299 -39926455 + MIR3 SINE MIR 38 161 -47 320 286 168 17 chr15 45770159 45770278 -39925476 + L3 LINE CR1 1413 1549 -28 6932 237 101 20 chr15 45770519 45772983 -39922771 + L2 LINE L2 668 3313 0 2144 136 10 0 chr15 45773302 45773611 -39922143 - AluSx SINE Alu 0 312 1 415 193 180 106 chr15 45773759 45773920 -39921834 - MER5B DNA MER1_type 0 178 6 242 231 0 5 chr15 45773918 45774011 -39921743 + MIR SINE MIR 72 204 -58 * 4321 148 67 26 chr15 45774129 45774860 -39920894 - L1MB7 LINE L1 -16 6168 5394 1564 164 51 31 chr15 45774860 45775152 -39920602 - AluJo SINE Alu -14 298 1 4321 148 67 26 chr15 45775152 45775448 -39920306 - L1MB7 LINE L1 -790 5394 5111 391 165 25 74 chr15 45776123 45776244 -39919510 + L1MB3 LINE L1 6069 6183 0 4116 141 0 20 chr15 45777177 45777879 -39917875 + L1PA15 LINE L1 5465 6152 -13 2309 81 0 7 chr15 45777883 45778181 -39917573 + AluSg SINE Alu 1 296 -14 2133 109 0 23 chr15 45778583 45778885 -39916869 - AluSc SINE Alu -14 295 1 2049 180 90 14 chr15 45779001 45779435 -39916319 + MLT1C LTR MaLR 1 467 0 237 282 134 67 chr15 45779454 45779738 -39916016 + L2 LINE L2 2519 2821 -493 1262 169 45 0 chr15 45779781 45779982 -39915772 - AluJb SINE Alu -20 292 83 212 400 15 15 chr15 45780230 45780365 -39915389 + L2 LINE L2 3133 3267 -5 2249 88 20 3 chr15 45780705 45781000 -39914754 + AluSp SINE Alu 1 300 -13 423 265 0 11 chr15 45782315 45782426 -39913328 + MIR SINE MIR 7 115 -93 458 248 56 8 chr15 45782509 45782634 -39913120 + L2 LINE L2 3142 3272 0 2268 78 0 36 chr15 45782696 45783025 -39912729 + AluY SINE Alu 2 311 0 673 328 87 6 chr15 45783051 45783396 -39912358 + L3 LINE CR1 651 1023 -554 199 268 18 0 chr15 45786432 45786488 -39909266 - MIR SINE MIR -57 151 95 28 0 0 0 chr15 45786847 45786875 -39908879 + AT_rich Low_complexity Low_complexity 1 28 0 2393 68 0 0 chr15 45787433 45787725 -39908029 - AluY SINE Alu -15 296 5 401 241 0 11 chr15 45788616 45788703 -39907051 - MIR3 SINE MIR -31 177 92 279 0 0 0 chr15 45789775 45789806 -39905948 + (CA)n Simple_repeat Simple_repeat 2 32 0 398 233 212 42 chr15 45790299 45790488 -39905266 + MIR SINE MIR 23 243 -19 2949 6 0 0 chr15 45790876 45791194 -39904560 + AluYb8 SINE Alu 1 318 0 935 196 27 53 chr15 45792172 45792397 -39903357 + MER20 DNA MER1_type 1 219 0 4203 140 71 33 chr15 45793052 45793255 -39902499 + L1MB7 LINE L1 5121 5315 -869 1989 145 0 19 chr15 45793255 45793566 -39902188 + AluSx SINE Alu 1 305 -7 4203 140 71 33 chr15 45793566 45794372 -39901382 + L1MB7 LINE L1 5315 6175 -9 2028 129 0 35 chr15 45794833 45795151 -39900603 + AluJb SINE Alu 1 307 -5 642 106 173 0 chr15 45795300 45795404 -39900350 + LTR12 LTR ERV1 1 122 -592 2398 60 236 173 chr15 45795404 45796023 -39899731 + LTR12 LTR ERV1 57 714 0 2172 113 0 0 chr15 45797776 45798069 -39897685 - AluSx SINE Alu -19 293 1 263 280 93 28 chr15 45798532 45798639 -39897115 + MIR SINE MIR 90 203 -59 2024 137 6 29 chr15 45798895 45799210 -39896544 - AluSx SINE Alu -3 309 2 1529 69 0 5 chr15 45799480 45799668 -39896086 + AluY SINE Alu 2 188 -123 21 0 0 0 chr15 45800538 45800559 -39895195 + AT_rich Low_complexity Low_complexity 1 21 0 236 194 236 0 chr15 45800619 45800691 -39895063 + L1ME4a LINE L1 5966 6054 -67 279 133 0 0 chr15 45800750 45800795 -39894959 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 228 270 101 0 chr15 45801044 45801133 -39894621 - MIR SINE MIR -71 191 94 205 304 0 0 chr15 45801138 45801194 -39894560 - MIR SINE MIR 0 262 207 735 95 0 26 chr15 45801238 45801354 -39894400 + AluJb SINE Alu 1 113 -199 189 0 0 0 chr15 45801359 45801380 -39894374 + (G)n Simple_repeat Simple_repeat 1 21 0 2027 134 0 10 chr15 45801531 45801837 -39893917 + AluJo SINE Alu 1 303 -9 223 246 82 0 chr15 45801852 45801913 -39893841 - MIR SINE MIR -152 110 45 1667 225 46 73 chr15 45804009 45804669 -39891085 - MER77 LTR ERV1 -8 597 54 370 312 29 22 chr15 45805137 45805275 -39890479 + MIR3 SINE MIR 22 160 -48 320 247 34 11 chr15 45805530 45805619 -39890135 - MIR SINE MIR -100 162 72 2062 113 13 27 chr15 45806007 45806307 -39889447 + AluSq SINE Alu 1 296 -17 2344 89 0 7 chr15 45806307 45806609 -39889145 + AluSx SINE Alu 1 300 -12 612 305 58 9 chr15 45807173 45807396 -39888358 - MIR SINE MIR -6 256 23 2292 94 17 0 chr15 45808876 45809173 -39886581 + AluSq SINE Alu 1 302 -11 275 125 0 21 chr15 45809727 45809775 -39885979 - U2 snRNA snRNA -141 47 1 2025 139 0 10 chr15 45809864 45810159 -39885595 + AluJb SINE Alu 1 292 -20 1267 156 19 9 chr15 45810745 45810956 -39884798 + AluJb SINE Alu 86 298 -14 420 244 17 0 chr15 45811442 45811557 -39884197 + L1PB4 LINE L1 6040 6156 0 1373 205 118 73 chr15 45812333 45812851 -39882903 - MLT1F LTR MaLR 0 542 2 254 148 19 0 chr15 45812890 45812944 -39882810 + CT-rich Low_complexity Low_complexity 1 55 0 336 244 96 5 chr15 45814132 45814341 -39881413 - Charlie7 DNA MER1_type -18 2594 2367 1268 246 124 54 chr15 45814359 45814435 -39881319 - Charlie7 DNA MER1_type -1873 739 670 2415 76 0 3 chr15 45814435 45814738 -39881016 + AluY SINE Alu 1 302 -9 1268 246 124 54 chr15 45814738 45815347 -39880407 - Charlie7 DNA MER1_type -1942 670 6 233 258 0 0 chr15 45815932 45815994 -39879760 + (CAT)n Simple_repeat Simple_repeat 2 63 0 361 227 34 11 chr15 45816027 45816115 -39879639 - MIR SINE MIR -89 173 84 286 271 59 0 chr15 45816854 45816972 -39878782 + L1MC4 LINE L1 7918 8042 0 337 272 124 29 chr15 45816996 45817217 -39878537 + L1ME4a LINE L1 5191 5430 -743 274 324 40 23 chr15 45817218 45817391 -39878363 + L1ME4a LINE L1 5384 5559 -562 4015 146 15 11 chr15 45817414 45818149 -39877605 - L1MA4 LINE L1 -7 6475 5738 2067 141 6 3 chr15 45818149 45818504 -39877250 - L1MA4 LINE L1 -1857 4471 4116 2083 170 45 0 chr15 45818509 45818909 -39876845 + MSTB1 LTR MaLR 15 432 0 7490 182 30 26 chr15 45818909 45819056 -39876698 - L1MA4 LINE L1 -2203 4125 3980 2048 112 0 4 chr15 45819056 45819332 -39876422 - AluSg SINE Alu -35 275 1 7490 182 30 26 chr15 45819332 45821142 -39874612 - L1MA4 LINE L1 -2348 3980 2180 2165 116 3 0 chr15 45821142 45821434 -39874320 - AluSx SINE Alu -19 293 1 7490 182 30 26 chr15 45821434 45823597 -39872157 - L1MA4 LINE L1 -4148 2180 5 446 299 42 21 chr15 45823608 45823660 -39872094 + L1ME4a LINE L1 5563 5612 -509 1978 146 10 17 chr15 45823660 45823955 -39871799 + AluJb SINE Alu 1 293 -19 446 299 42 21 chr15 45823955 45824236 -39871518 + L1ME4a LINE L1 5612 5903 -218 1244 179 13 5 chr15 45824299 45824523 -39871231 + L1MDa LINE L1 1 226 -6314 4154 192 53 44 chr15 45824536 45825595 -39870159 - L1MCb LINE L1 -4543 2021 820 2485 70 0 0 chr15 45825595 45825897 -39869857 - AluY SINE Alu -9 302 1 4154 192 53 44 chr15 45825897 45826723 -39869031 - L1MCb LINE L1 -5744 820 3 1250 142 4 65 chr15 45827583 45827785 -39867969 + L1MB7 LINE L1 5939 6123 -61 2235 75 0 46 chr15 45827785 45828091 -39867663 + AluY SINE Alu 1 292 -19 1250 142 4 65 chr15 45828091 45828149 -39867605 + L1MB7 LINE L1 6123 6183 -1 1645 149 34 78 chr15 45828408 45828790 -39866964 - MLT1A1 LTR MaLR 0 365 1 234 306 14 0 chr15 45828829 45828901 -39866853 - MIR SINE MIR -33 229 157 2120 108 0 4 chr15 45828902 45829208 -39866546 - AluSg1 SINE Alu 0 305 1 331 300 67 0 chr15 45829215 45829305 -39866449 + L2 LINE L2 3123 3218 -54 2488 164 60 16 chr15 45829320 45829868 -39865886 - LTR49 LTR ERV1 -23 572 1 431 261 143 12 chr15 45830045 45830206 -39865548 - L2 LINE L2 -26 3287 3106 21 36 0 0 chr15 45831166 45831194 -39864560 + AT_rich Low_complexity Low_complexity 1 28 0 187 321 0 0 chr15 45831494 45831550 -39864204 + T-rich Low_complexity Low_complexity 1 56 0 277 198 25 0 chr15 45831982 45832063 -39863691 + (TA)n Simple_repeat Simple_repeat 2 84 0 5768 193 66 22 chr15 45832064 45832490 -39863264 + L1ME1 LINE L1 3786 4192 -2142 303 28 0 0 chr15 45832490 45832526 -39863228 + (CA)n Simple_repeat Simple_repeat 1 36 0 5768 193 66 22 chr15 45832526 45833473 -39862281 + L1ME1 LINE L1 4192 5096 -1238 2229 107 43 0 chr15 45833473 45833773 -39861981 + AluSq SINE Alu 1 313 0 5768 193 66 22 chr15 45833773 45834555 -39861199 + L1ME1 LINE L1 5096 6203 -131 2273 107 0 3 chr15 45834555 45834864 -39860890 - AluY SINE Alu -3 308 1 5768 193 66 22 chr15 45834864 45835000 -39860754 + L1ME1 LINE L1 6203 6332 -2 457 230 14 0 chr15 45835159 45835174 -39860580 - L1MA4 LINE L1 -456 5844 5830 943 284 34 0 chr15 45835174 45835213 -39860541 - L1ME3 LINE L1 -334 5897 5861 2222 100 0 0 chr15 45835213 45835523 -39860231 - L1PA8 LINE L1 -2 6170 5861 943 284 34 0 chr15 45835523 45835803 -39859951 - L1ME3 LINE L1 -370 5861 5567 705 258 67 48 chr15 45835809 45836497 -39859257 - L1ME3 LINE L1 -3701 2514 1863 376 259 118 86 chr15 45836503 45837005 -39858749 - L1ME3 LINE L1 -4580 1816 1299 2087 121 0 0 chr15 45837031 45837311 -39858443 + AluSg SINE Alu 28 307 -3 705 267 94 72 chr15 45837353 45837474 -39858280 + L1M4 LINE L1 3073 3190 -2956 1971 108 7 4 chr15 45837474 45837791 -39857963 - AluSx SINE Alu 0 323 6 705 267 94 72 chr15 45837791 45838099 -39857655 + L1M4 LINE L1 3190 3489 -2657 183 100 0 0 chr15 45838099 45838129 -39857625 + (CA)n Simple_repeat Simple_repeat 2 31 0 705 267 94 72 chr15 45838129 45838746 -39857008 + L1M4 LINE L1 3489 4145 -2001 325 262 122 80 chr15 45838802 45839088 -39856666 - MLT1J LTR MaLR -1 510 213 247 192 141 0 chr15 45839282 45839360 -39856394 - MER53 DNA DNA -71 118 30 2253 87 0 13 chr15 45839443 45839743 -39856011 + AluY SINE Alu 1 296 -15 2133 103 3 10 chr15 45842005 45842297 -39853457 - AluSq SINE Alu -23 290 1 192 77 0 0 chr15 45842297 45842323 -39853431 + (T)n Simple_repeat Simple_repeat 1 26 0 2080 135 33 3 chr15 45842357 45842660 -39853094 - AluSx SINE Alu 0 312 1 510 245 35 28 chr15 45844662 45844805 -39850949 + MIR SINE MIR 89 232 -30 216 200 0 0 chr15 45845389 45845439 -39850315 + (CTG)n Simple_repeat Simple_repeat 2 51 0 402 318 0 9 chr15 45845442 45845623 -39850131 - MIR SINE MIR -6 256 28 25 51 0 0 chr15 45846110 45846149 -39849605 + AT_rich Low_complexity Low_complexity 1 39 0 332 94 19 0 chr15 45846294 45846347 -39849407 + (CA)n Simple_repeat Simple_repeat 2 55 0 289 270 20 40 chr15 45846730 45846830 -39848924 + MIR3 SINE MIR 83 180 -28 2197 112 0 32 chr15 45847404 45847716 -39848038 - AluSx SINE Alu -10 302 1 5316 86 12 9 chr15 45847719 45848464 -39847290 - L1PA15 LINE L1 0 6165 5419 494 264 109 10 chr15 45848918 45849111 -39846643 - L1ME4a LINE L1 -201 5920 5709 1841 155 0 16 chr15 45849113 45849416 -39846338 - AluJb SINE Alu -14 298 1 835 221 54 29 chr15 45849598 45849802 -39845952 - L2 LINE L2 0 3313 3105 2182 128 0 0 chr15 45849818 45850116 -39845638 + AluSx SINE Alu 1 298 -14 250 304 274 0 chr15 45851200 45851335 -39844419 - MIR3 SINE MIR -1 207 36 1836 158 0 10 chr15 45851424 45851715 -39844039 + AluJo SINE Alu 1 288 -24 439 139 42 0 chr15 45852087 45852159 -39843595 + MIR SINE MIR 64 138 -70 520 267 127 0 chr15 45852184 45852349 -39843405 - MIR SINE MIR -38 224 39 207 0 0 0 chr15 45853049 45853072 -39842682 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1118 141 0 12 chr15 45853074 45853237 -39842517 - AluJo SINE Alu -30 282 122 388 241 12 25 chr15 45853630 45853792 -39841962 + GA-rich Low_complexity Low_complexity 2 161 0 186 43 0 0 chr15 45858363 45858386 -39837368 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 28 71 0 0 chr15 45858663 45858719 -39837035 + AT_rich Low_complexity Low_complexity 1 56 0 1329 169 77 8 chr15 45859359 45859619 -39836135 + AluJo SINE Alu 29 306 -6 2494 82 0 0 chr15 45859954 45860257 -39835497 - AluSx SINE Alu -9 303 1 2442 94 0 0 chr15 45861007 45861316 -39834438 + AluSc SINE Alu 1 309 0 27 49 0 0 chr15 45861519 45861560 -39834194 + AT_rich Low_complexity Low_complexity 1 41 0 2158 166 50 29 chr15 45863039 45863564 -39832190 - Charlie1 DNA MER1_type -22 2739 2204 708 188 14 0 chr15 45863558 45863696 -39832058 - Charlie1 DNA MER1_type -2621 140 1 * 1739 166 46 25 chr15 45863697 45864024 -39831730 + THE1C LTR MaLR 1 338 -37 2401 94 3 0 chr15 45864024 45864322 -39831432 - AluSp SINE Alu -14 299 1 1739 166 46 25 chr15 45864322 45864361 -39831393 + THE1C LTR MaLR 338 375 0 1998 145 7 3 chr15 45865869 45866166 -39829588 + AluJb SINE Alu 1 298 -14 657 212 0 79 chr15 45866492 45866695 -39829059 - MLT1E2 LTR MaLR -439 187 1 277 302 52 21 chr15 45866849 45866945 -39828809 + MIR3 SINE MIR 83 181 -27 286 274 94 28 chr15 45871559 45871665 -39824089 - L2 LINE L2 -1 3312 3200 551 282 13 0 chr15 45871835 45871984 -39823770 - MIR SINE MIR -14 248 98 180 111 0 0 chr15 45872211 45872238 -39823516 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 277 264 50 66 chr15 45873474 45873595 -39822159 - MIR3 SINE MIR -77 131 13 2475 89 0 0 chr15 45874656 45874959 -39820795 - AluSx SINE Alu -9 303 1 197 225 142 75 chr15 45874965 45875085 -39820669 - MIR SINE MIR -70 192 65 430 261 26 0 chr15 45875121 45875263 -39820491 + MIR3 SINE MIR 49 195 -13 532 245 129 0 chr15 45876233 45876380 -39819374 + MIR SINE MIR 50 215 -47 2047 151 0 19 chr15 45876665 45876976 -39818778 + AluJb SINE Alu 1 305 -7 1166 77 12 0 chr15 45877116 45877284 -39818470 - L1MB4 LINE L1 -6 6174 6005 543 224 109 6 chr15 45877313 45877469 -39818285 - MIR3 SINE MIR -18 190 19 1785 156 26 13 chr15 45877687 45877989 -39817765 - AluJb SINE Alu -6 306 1 600 304 42 34 chr15 45878019 45878279 -39817475 - MIR SINE MIR 0 262 3 833 217 18 0 chr15 45878419 45878585 -39817169 - MIR SINE MIR 0 262 94 591 133 0 0 chr15 45879875 45880005 -39815749 - AluSx SINE Alu 0 329 200 1153 85 0 0 chr15 45880013 45880154 -39815600 - AluSx SINE Alu -172 141 1 27 0 0 0 chr15 45881303 45881330 -39814424 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr15 45882352 45882391 -39813363 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 45882492 45882514 -39813240 + AT_rich Low_complexity Low_complexity 1 22 0 593 331 25 16 chr15 45883314 45883556 -39812198 + MIR SINE MIR 2 245 -17 1813 152 0 44 chr15 45884676 45884991 -39810763 - AluJb SINE Alu 0 312 12 2272 101 0 7 chr15 45887169 45887467 -39808287 + AluSx SINE Alu 1 296 -16 440 304 62 33 chr15 45888848 45889245 -39806509 - L1ME4a LINE L1 -248 5873 5466 21 0 0 0 chr15 45889450 45889471 -39806283 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr15 45889594 45889627 -39806127 + (CAT)n Simple_repeat Simple_repeat 3 35 0 464 216 36 120 chr15 45889639 45889889 -39805865 - MIR SINE MIR -20 242 14 1549 163 52 4 chr15 45890473 45890725 -39805029 + AluJo SINE Alu 24 287 -25 579 303 72 9 chr15 45890892 45891113 -39804641 + MIR SINE MIR 28 262 0 279 241 0 12 chr15 45894376 45894459 -39801295 - MLT1L LTR MaLR 0 615 534 * 659 253 127 90 chr15 45894458 45894971 -39800783 - MLT1K LTR MaLR -44 544 13 195 219 0 0 chr15 45895118 45895159 -39800595 + MIR SINE MIR 49 89 -173 228 297 14 0 chr15 45895534 45895608 -39800146 + MIR3 SINE MIR 119 193 -15 186 103 0 0 chr15 45895819 45895848 -39799906 + (TG)n Simple_repeat Simple_repeat 2 30 0 2045 122 37 7 chr15 45896602 45896896 -39798858 - AluSq SINE Alu -10 303 1 285 317 24 55 chr15 45897060 45897224 -39798530 + MIR SINE MIR 77 235 -27 309 26 0 0 chr15 45897268 45897306 -39798448 + (TG)n Simple_repeat Simple_repeat 2 39 0 213 240 14 24 chr15 45897449 45897665 -39798089 + CT-rich Low_complexity Low_complexity 1 213 0 269 171 18 43 chr15 45897679 45897843 -39797911 + CT-rich Low_complexity Low_complexity 3 162 0 257 286 0 69 chr15 45897851 45898026 -39797728 + C-rich Low_complexity Low_complexity 5 167 0 237 255 19 5 chr15 45898099 45898309 -39797445 + CT-rich Low_complexity Low_complexity 1 213 0 3967 233 78 14 chr15 45898392 45899508 -39796246 - L1MEc LINE L1 -2381 3834 2604 2064 163 15 15 chr15 45899508 45899845 -39795909 + MER1B DNA MER1_type 1 337 0 3967 233 78 14 chr15 45899845 45900165 -39795589 - L1MEc LINE L1 -3611 2604 2306 3260 166 16 19 chr15 45900197 45900871 -39794883 - L1MD3 LINE L1 -7 7988 7317 2284 111 0 3 chr15 45900892 45901198 -39794556 + AluSq SINE Alu 1 305 -8 596 203 13 13 chr15 45901232 45901385 -39794369 - L1MEc LINE L1 -3994 2402 2250 1968 217 35 15 chr15 45901385 45901865 -39793889 + Tigger6a DNA MER2_type 2 491 -592 180 152 0 0 chr15 45902753 45902786 -39792968 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 406 276 70 16 chr15 45903208 45903357 -39792397 + MER5A DNA MER1_type 29 188 -1 288 303 0 22 chr15 45903357 45903437 -39792317 + MER5A DNA MER1_type 112 189 0 1551 205 17 3 chr15 45903894 45904192 -39791562 - AluJo SINE Alu -8 304 3 1100 164 72 60 chr15 45904201 45904548 -39791206 + LTR37A LTR ERV1 76 426 0 1562 179 33 16 chr15 45904949 45905256 -39790498 - AluJb SINE Alu 0 312 1 418 233 52 78 chr15 45905259 45905491 -39790263 + MER31-int LTR ERV1 1061 1286 -3650 1854 230 27 71 chr15 45905534 45905718 -39790036 + MER31-int LTR ERV1 3641 3832 -1104 2241 110 10 0 chr15 45905718 45906028 -39789726 - AluSq SINE Alu 0 313 1 1854 230 27 71 chr15 45906028 45906477 -39789277 + MER31-int LTR ERV1 3832 4246 -690 1206 145 142 45 chr15 45906564 45906896 -39788858 + LTR37A LTR ERV1 63 426 0 507 213 172 18 chr15 45907005 45907174 -39788580 - L2 LINE L2 -2 3311 3117 223 333 0 36 chr15 45907680 45907764 -39787990 + L2 LINE L2 3223 3303 -10 573 55 0 0 chr15 45907922 45907995 -39787759 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 183 100 0 0 chr15 45908000 45908030 -39787724 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 208 365 54 0 chr15 45908533 45908607 -39787147 - L2 LINE L2 -2 3270 3193 646 267 27 11 chr15 45908870 45909057 -39786697 - MIR3 SINE MIR -4 204 15 185 216 0 0 chr15 45910841 45910878 -39784876 + L3 LINE CR1 423 459 -1118 281 87 0 22 chr15 45911096 45911142 -39784612 + (TG)n Simple_repeat Simple_repeat 2 46 0 712 214 5 78 chr15 45911441 45911633 -39784121 + MER5B DNA MER1_type 1 178 0 21 57 0 0 chr15 45911992 45912027 -39783727 + AT_rich Low_complexity Low_complexity 1 35 0 1997 147 0 3 chr15 45912124 45912416 -39783338 - AluJo SINE Alu -21 291 1 373 233 9 26 chr15 45912416 45912532 -39783222 - L1ME4a LINE L1 -38 6083 5970 259 209 23 35 chr15 45912570 45912656 -39783098 - HAL1b LINE L1 -7 1341 1257 253 228 13 13 chr15 45912724 45912803 -39782951 - HAL1b LINE L1 -265 1083 1005 293 244 171 24 chr15 45912831 45912954 -39782800 - MER58B DNA MER1_type 0 341 201 2225 149 22 3 chr15 45912956 45913312 -39782442 + MLT1A1 LTR MaLR 2 364 -1 1531 260 99 20 chr15 45913448 45914144 -39781610 - HAL1b LINE L1 -476 872 122 848 269 58 45 chr15 45914160 45914587 -39781167 + MLT1J LTR MaLR 47 479 -32 424 289 23 16 chr15 45915736 45915864 -39779890 + MIR SINE MIR 19 147 -115 295 216 68 0 chr15 45915989 45916063 -39779691 + MLT1J LTR MaLR 90 168 -343 273 57 0 0 chr15 45916337 45916372 -39779382 + (TG)n Simple_repeat Simple_repeat 2 36 0 1489 184 36 18 chr15 45916425 45916702 -39779052 + AluJo SINE Alu 1 282 -30 210 208 0 21 chr15 45916766 45916814 -39778940 + MIR SINE MIR 165 211 -51 989 243 75 3 chr15 45916858 45916880 -39778874 - L1ME3A LINE L1 -5 6165 6146 2155 138 0 0 chr15 45916880 45917176 -39778578 - AluJb SINE Alu -16 296 1 989 243 75 3 chr15 45917176 45917474 -39778280 - L1ME3A LINE L1 -24 6146 5822 1406 250 39 104 chr15 45917951 45918756 -39776998 + L1ME LINE L1 16 767 -5303 5500 60 1 1 chr15 45919520 45920223 -39775531 + L1PA5 LINE L1 5450 6152 -2 261 246 31 23 chr15 45920441 45920571 -39775183 + L1MC5 LINE L1 7615 7745 -216 462 154 0 33 chr15 45920761 45920852 -39774902 - L1MA9 LINE L1 0 6312 6225 2391 249 73 56 chr15 45920882 45921550 -39774204 + L1ME LINE L1 796 1452 -4628 2104 121 6 13 chr15 45921550 45921863 -39773891 - AluSx SINE Alu -1 311 1 2391 249 73 56 chr15 45921863 45921948 -39773806 + L1ME LINE L1 1452 1534 -4546 2284 104 0 10 chr15 45921948 45922255 -39773499 + AluSg SINE Alu 1 304 -6 2391 249 73 56 chr15 45922255 45922649 -39773105 + L1ME LINE L1 1534 1920 -4160 2519 70 0 0 chr15 45922649 45922950 -39772804 + AluY SINE Alu 1 301 -10 2391 249 73 56 chr15 45922950 45923027 -39772727 + L1ME LINE L1 1920 1994 -4086 2382 214 19 43 chr15 45923027 45923677 -39772077 + LTR27 LTR ERV1 1 634 -2 2391 249 73 56 chr15 45923677 45924366 -39771388 + L1ME LINE L1 1994 2723 -3357 248 259 0 0 chr15 45924537 45924591 -39771163 + A-rich Low_complexity Low_complexity 3 56 0 540 135 5 70 chr15 45924591 45924776 -39770978 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 431 319 0 7 chr15 45925207 45925351 -39770403 - MER103 DNA DNA -16 150 8 21 0 0 0 chr15 45925640 45925661 -39770093 + AT_rich Low_complexity Low_complexity 1 21 0 189 214 0 24 chr15 45926531 45926573 -39769181 + L2 LINE L2 3232 3272 0 470 289 13 33 chr15 45926717 45926869 -39768885 - MIR3 SINE MIR -7 201 53 2192 97 7 3 chr15 45926937 45927246 -39768508 - AluY SINE Alu -1 310 1 249 317 16 32 chr15 45927289 45927412 -39768342 - L1P LINE L1 -1144 5002 4882 22 56 0 0 chr15 45927517 45927553 -39768201 + AT_rich Low_complexity Low_complexity 1 36 0 585 274 24 10 chr15 45927670 45927878 -39767876 - L1M4 LINE L1 -1525 4621 4411 205 232 0 37 chr15 45927920 45928002 -39767752 + GA-rich Low_complexity Low_complexity 4 82 0 308 262 43 28 chr15 45928017 45928158 -39767596 + L1ME4a LINE L1 5975 6117 -4 208 323 65 48 chr15 45928433 45928557 -39767197 - L2 LINE L2 -8 3305 3180 2088 119 36 7 chr15 45928687 45928990 -39766764 + AluSx SINE Alu 1 312 0 868 266 19 27 chr15 45929352 45929611 -39766143 + MIR SINE MIR 3 259 -3 477 335 50 6 chr15 45930530 45930691 -39765063 + MIR SINE MIR 13 180 -82 21 0 0 0 chr15 45930732 45930753 -39765001 + AT_rich Low_complexity Low_complexity 1 21 0 291 253 189 91 chr15 45931275 45931560 -39764194 + MER102b DNA MER1_type 1 313 -28 26 50 0 0 chr15 45933027 45933067 -39762687 + AT_rich Low_complexity Low_complexity 1 40 0 682 147 93 8 chr15 45933779 45933908 -39761846 - Charlie4 DNA MER1_type -4 1957 1818 27 81 0 0 chr15 45934591 45934653 -39761101 + AT_rich Low_complexity Low_complexity 1 62 0 564 263 117 12 chr15 45935041 45935212 -39760542 + MIR SINE MIR 53 241 -21 318 314 0 0 chr15 45935661 45935747 -39760007 - MIR SINE MIR 0 262 177 288 356 126 0 chr15 45936212 45936386 -39759368 - MIR SINE MIR -15 247 52 264 333 10 10 chr15 45936445 45936544 -39759210 - MIR SINE MIR -61 147 49 235 202 22 124 chr15 45936720 45936809 -39758945 - L2 LINE L2 -27 3286 3207 517 218 199 24 chr15 45936968 45937174 -39758580 - MIR SINE MIR 0 262 21 225 65 0 0 chr15 45937482 45937513 -39758241 + (CCA)n Simple_repeat Simple_repeat 2 32 0 202 54 27 27 chr15 45938661 45938698 -39757056 + (CCCCCA)n Simple_repeat Simple_repeat 3 39 0 538 246 58 37 chr15 45942482 45942673 -39753081 + MIR3 SINE MIR 5 199 -9 1470 143 47 0 chr15 45942747 45943005 -39752749 - L1MB7 LINE L1 -19 6165 5896 2305 83 0 0 chr15 45943307 45943607 -39752147 - AluSg SINE Alu 0 310 10 22 0 0 0 chr15 45944334 45944356 -39751398 + AT_rich Low_complexity Low_complexity 1 22 0 2408 99 0 0 chr15 45944486 45944790 -39750964 + AluSx SINE Alu 4 307 -5 279 258 56 22 chr15 45945765 45945854 -39749900 + MIR SINE MIR 111 202 -60 296 225 173 78 chr15 45945944 45946243 -39749511 + L1MC5 LINE L1 6923 7247 -728 750 188 25 35 chr15 45946373 45946575 -39749179 + L1MC5 LINE L1 7268 7467 -494 6356 93 36 57 chr15 45946595 45947327 -39748427 - L1MA3 LINE L1 0 6305 5559 1926 139 4 4 chr15 45947327 45947608 -39748146 - AluSx SINE Alu -31 281 1 6356 93 36 57 chr15 45947608 45947870 -39747884 - L1MA3 LINE L1 -746 5559 5336 2219 95 3 7 chr15 45947870 45948166 -39747588 - AluSx SINE Alu -17 295 1 6356 93 36 57 chr15 45948166 45948415 -39747339 - L1MA3 LINE L1 -969 5336 5083 313 268 14 21 chr15 45948462 45948604 -39747150 + L1MC5 LINE L1 7533 7673 -288 318 182 206 35 chr15 45948726 45948896 -39746858 + L1MC5 LINE L1 7669 7867 -94 357 268 117 47 chr15 45949246 45949459 -39746295 - MIR SINE MIR -6 256 29 685 266 148 43 chr15 45950001 45950306 -39745448 - L2 LINE L2 0 3313 2977 1147 327 71 10 chr15 45950376 45950466 -39745288 - L2 LINE L2 -1766 1548 1465 1427 265 31 45 chr15 45950466 45950980 -39744774 - MLT1J LTR MaLR -4 507 1 1147 327 71 10 chr15 45950980 45951384 -39744370 - L2 LINE L2 -1849 1465 1024 583 263 28 80 chr15 45951462 45951896 -39743858 - MLT1L LTR MaLR -125 490 1 525 335 45 0 chr15 45951896 45952117 -39743637 - L2 LINE L2 -2281 1033 803 363 284 212 7 chr15 45952175 45952474 -39743280 + L2 LINE L2 2674 3051 -262 1882 191 30 0 chr15 45952533 45952863 -39742891 - MER2 DNA MER2_type -5 340 1 268 256 197 51 chr15 45952880 45952997 -39742757 + L2 LINE L2 3160 3293 -20 643 202 49 26 chr15 45953030 45953207 -39742547 - MIR SINE MIR -63 145 7 295 192 96 0 chr15 45953188 45953261 -39742493 - L2 LINE L2 -19 3294 3215 * 303 240 39 19 chr15 45953528 45953611 -39742143 + L1MC5 LINE L1 7806 7893 -68 1832 186 8 27 chr15 45953611 45953644 -39742110 - MLT1A1 LTR MaLR 0 365 333 1660 153 28 28 chr15 45953644 45953931 -39741823 + AluJb SINE Alu 3 289 -23 1832 186 8 27 chr15 45953931 45954267 -39741487 - MLT1A1 LTR MaLR -32 333 3 303 240 39 19 chr15 45954267 45954287 -39741467 + L1MC5 LINE L1 7893 7911 -50 273 75 0 25 chr15 45954338 45954378 -39741376 - L2 LINE L2 -90 3223 3185 214 263 0 35 chr15 45954772 45954829 -39740925 + L3 LINE CR1 1521 1575 -2 227 146 83 21 chr15 45954848 45954896 -39740858 - MIR SINE MIR 0 262 212 270 260 52 13 chr15 45954989 45955066 -39740688 - MARNA DNA Mariner -267 319 240 303 290 99 15 chr15 45955191 45955322 -39740432 - MER20B DNA MER1_type -614 169 28 325 304 71 0 chr15 45955323 45955435 -39740319 + L2 LINE L2 3147 3266 -6 438 226 66 123 chr15 45955558 45955876 -39739878 + HsTC2 DNA Tc2 1 300 -1598 675 326 53 9 chr15 45955898 45956235 -39739519 + HsTC2 DNA Tc2 540 891 -1007 876 322 64 67 chr15 45956411 45957297 -39738457 + L2 LINE L2 2174 3069 -203 15011 159 28 13 chr15 45957417 45959281 -39736473 + L1PA13 LINE L1 2118 3954 -2209 1890 115 11 21 chr15 45959281 45959560 -39736194 + AluSx SINE Alu 1 276 -36 414 0 0 0 chr15 45959565 45959611 -39736143 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 15011 159 28 13 chr15 45959611 45961732 -39734022 + L1PA13 LINE L1 3957 6161 -2 3489 103 20 9 chr15 45961749 45962293 -39733461 + L1MA3 LINE L1 5756 6305 0 237 319 0 0 chr15 46013828 46013919 -39681835 + G-rich Low_complexity Low_complexity 1 91 0 321 322 41 53 chr15 46013986 46014157 -39681597 + L3 LINE CR1 1403 1571 -6 245 333 43 11 chr15 46014267 46014360 -39681394 + MIR SINE MIR 51 146 -116 549 261 44 37 chr15 46015389 46015661 -39680093 + L1M4 LINE L1 2111 2384 -3762 372 286 111 25 chr15 46015713 46015912 -39679842 + L1M4 LINE L1 2958 3173 -2973 257 294 12 35 chr15 46016713 46016883 -39678871 + GA-rich Low_complexity Low_complexity 4 169 0 435 243 101 32 chr15 46018360 46018516 -39677238 - L2 LINE L2 -37 3276 3103 943 186 20 52 chr15 46018516 46018822 -39676932 + AluY SINE Alu 1 296 -5 435 243 101 32 chr15 46018822 46018854 -39676900 - L2 LINE L2 -210 3103 3075 805 141 8 23 chr15 46020413 46020541 -39675213 - FLAM_C SINE Alu -7 126 1 290 294 36 31 chr15 46022500 46022694 -39673060 - AluSp SINE Alu -1 302 108 2040 135 3 0 chr15 46026283 46026571 -39669183 + AluJo SINE Alu 1 289 -23 264 282 29 48 chr15 46026578 46026681 -39669073 + MIR SINE MIR 160 260 -2 2280 199 7 84 chr15 46028894 46029010 -39666744 - L1MC3 LINE L1 -70 7715 7592 1775 160 3 7 chr15 46029010 46029298 -39666456 - AluJo SINE Alu -25 287 1 2280 199 7 84 chr15 46029298 46029799 -39665955 - L1MC3 LINE L1 -193 7592 7146 333 0 0 0 chr15 46030388 46030425 -39665329 + (CA)n Simple_repeat Simple_repeat 1 37 0 1167 211 57 17 chr15 46031119 46031418 -39664336 + MER67A LTR ERV1 233 543 0 1616 222 72 34 chr15 46031421 46031922 -39663832 - L1ME1 LINE L1 -44 6122 5603 279 275 37 9 chr15 46031923 46032032 -39663722 - L1ME LINE L1 -294 5827 5716 225 94 0 0 chr15 46032476 46032508 -39663246 + (TG)n Simple_repeat Simple_repeat 1 32 0 2253 88 0 3 chr15 46034800 46035108 -39660646 - AluSg SINE Alu 0 307 1 3939 189 46 27 chr15 46035108 46035652 -39660102 + L1M4 LINE L1 4416 4985 -1161 2383 81 3 3 chr15 46035652 46035950 -39659804 + AluSx SINE Alu 1 298 -14 3939 189 46 27 chr15 46035950 46036305 -39659449 + L1M4 LINE L1 4985 5332 -814 473 257 110 0 chr15 46036444 46036553 -39659201 - FLAM_A SINE Alu -12 121 1 262 275 6 99 chr15 46036638 46036820 -39658934 - LTR67 LTR ERVL -48 509 345 466 230 62 9 chr15 46036868 46036981 -39658773 + MER65C LTR ERV1 1 119 -342 2479 81 3 0 chr15 46036981 46037290 -39658464 + AluY SINE Alu 1 310 -1 1048 99 0 7 chr15 46038426 46038567 -39657187 - AluSc SINE Alu -169 140 1 2424 85 0 0 chr15 46038814 46039108 -39656646 - AluSx SINE Alu -18 294 1 24 32 0 0 chr15 46039465 46039496 -39656258 + AT_rich Low_complexity Low_complexity 1 31 0 2452 88 7 0 chr15 46039864 46040170 -39655584 + AluSc SINE Alu 1 308 -1 22 35 0 0 chr15 46040171 46040200 -39655554 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr15 46040227 46040254 -39655500 + AT_rich Low_complexity Low_complexity 1 27 0 767 159 159 7 chr15 46040792 46040943 -39654811 + MSTB LTR MaLR 177 350 -76 1829 149 10 7 chr15 46041750 46042038 -39653716 + AluJb SINE Alu 1 289 -23 2915 16 0 0 chr15 46042162 46042478 -39653276 - AluYb8 SINE Alu -2 316 1 316 325 122 11 chr15 46042855 46043043 -39652711 + MIR SINE MIR 49 257 -5 193 297 79 40 chr15 46043223 46043324 -39652430 + MIR SINE MIR 3 107 -155 360 237 132 0 chr15 46043798 46043912 -39651842 + L2 LINE L2 3095 3223 -90 2190 123 3 0 chr15 46044064 46044372 -39651382 + AluSx SINE Alu 1 309 -3 2059 73 3 94 chr15 46045340 46045668 -39650086 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr15 46046457 46046478 -39649276 + GC_rich Low_complexity Low_complexity 1 21 0 535 222 49 74 chr15 46047224 46047427 -39648327 - L1ME3A LINE L1 -55 6115 5918 940 133 64 48 chr15 46047428 46047657 -39648097 + AluJo SINE Alu 96 327 0 1112 152 62 29 chr15 46047659 46047869 -39647885 + MLT1A2 LTR MaLR 157 373 -1 944 255 84 26 chr15 46047872 46048370 -39647384 - L1ME3A LINE L1 -514 5648 5128 2338 100 3 0 chr15 46048376 46048677 -39647077 - AluSp SINE Alu -11 302 1 721 198 25 6 chr15 46049794 46049951 -39645803 - MER65C LTR ERV1 0 461 302 449 319 38 16 chr15 46050616 46050801 -39644953 - MIR SINE MIR -50 212 24 781 292 36 60 chr15 46055095 46055403 -39640351 - L1MC/D LINE L1 -2144 5664 5367 2343 96 0 7 chr15 46055403 46055704 -39640050 - AluSx SINE Alu -13 299 1 781 292 36 60 chr15 46055704 46055809 -39639945 - L1MC/D LINE L1 -2441 5367 5261 2312 112 0 3 chr15 46056158 46056470 -39639284 - AluSx SINE Alu -1 311 1 243 236 94 19 chr15 46056492 46056598 -39639156 - L1ME3A LINE L1 -1148 4998 4885 257 310 86 9 chr15 46057768 46057884 -39637870 + L2 LINE L2 3148 3272 0 633 212 80 0 chr15 46057916 46058053 -39637701 + L2 LINE L2 2489 2636 -678 232 293 47 28 chr15 46059140 46059246 -39636508 + MIR SINE MIR 153 260 -2 375 288 18 9 chr15 46059827 46059938 -39635816 + MIR SINE MIR 111 222 -40 22 56 0 0 chr15 46061701 46061737 -39634017 + AT_rich Low_complexity Low_complexity 1 36 0 782 256 96 20 chr15 46062418 46062719 -39633035 + MER5C DNA MER1_type 1 324 0 3476 144 32 38 chr15 46062823 46063474 -39632280 - L1MB7 LINE L1 -16 6168 5522 1149 239 101 23 chr15 46066693 46067040 -39628714 + MLT1A2 LTR MaLR 1 374 0 340 168 7 94 chr15 46067551 46067700 -39628054 - L1MC3 LINE L1 -7 7778 7643 202 284 27 14 chr15 46068904 46068978 -39626776 + C-rich Low_complexity Low_complexity 5 79 0 1618 154 62 4 chr15 46069641 46069913 -39625841 - AluSg SINE Alu -22 288 1 377 234 9 19 chr15 46069958 46070065 -39625689 - MER104 DNA Tc2 -70 110 5 266 359 31 31 chr15 46070097 46070256 -39625498 - MIR3 SINE MIR -5 203 45 214 226 19 0 chr15 46070981 46071034 -39624720 + L2 LINE L2 3179 3232 -81 427 290 130 1 chr15 46071100 46071265 -39624489 + MIR3 SINE MIR 10 192 -62 820 199 148 47 chr15 46071366 46071602 -39624152 + MIR SINE MIR 3 262 0 275 293 98 16 chr15 46071992 46072115 -39623639 - MIR3 SINE MIR -27 181 49 318 278 48 24 chr15 46072156 46072282 -39623472 + MIR3 SINE MIR 29 157 -51 1860 163 3 3 chr15 46072503 46072798 -39622956 + AluJb SINE Alu 1 295 -17 369 0 0 0 chr15 46072798 46072839 -39622915 + (CA)n Simple_repeat Simple_repeat 2 42 0 2317 110 3 7 chr15 46073174 46073483 -39622271 - AluSx SINE Alu 0 312 5 424 249 238 11 chr15 46074209 46074390 -39621364 - MIR SINE MIR -22 240 19 276 267 163 15 chr15 46076356 46076491 -39619263 - MIR SINE MIR -11 251 97 2169 145 0 0 chr15 46077603 46077914 -39617840 - AluSx SINE Alu -1 311 1 314 271 34 17 chr15 46078004 46078122 -39617632 + L1ME LINE L1 5542 5661 -460 1665 196 11 0 chr15 46078190 46078475 -39617279 - AluJo SINE Alu -24 288 1 576 175 10 10 chr15 46078488 46078585 -39617169 - AluJb SINE Alu -18 294 198 495 187 0 11 chr15 46079477 46079568 -39616186 - MER67A LTR ERV1 -453 90 1 25 75 0 0 chr15 46079650 46079703 -39616051 + AT_rich Low_complexity Low_complexity 1 53 0 417 309 140 0 chr15 46079966 46080102 -39615652 + MIR3 SINE MIR 50 204 -4 2203 115 0 0 chr15 46080161 46080457 -39615297 - AluSx SINE Alu -16 296 1 2114 127 0 7 chr15 46080878 46081186 -39614568 + AluSg SINE Alu 1 306 -4 23 0 0 0 chr15 46081847 46081870 -39613884 + AT_rich Low_complexity Low_complexity 1 23 0 293 192 61 30 chr15 46081870 46081969 -39613785 - L1ME4a LINE L1 -38 6083 5982 618 278 62 9 chr15 46081977 46082204 -39613550 + L2 LINE L2 2921 3159 -154 243 274 0 36 chr15 46082251 46082277 -39613477 + (TA)n Simple_repeat Simple_repeat 1 26 -55 2213 100 10 0 chr15 46082277 46082568 -39613186 + AluSx SINE Alu 1 294 -18 243 274 0 36 chr15 46082568 46082625 -39613129 + (TA)n Simple_repeat Simple_repeat 26 81 0 456 257 49 42 chr15 46083150 46083294 -39612460 - MIR3 SINE MIR -61 147 3 451 208 0 38 chr15 46084185 46084291 -39611463 - L1MC4 LINE L1 0 8042 7893 2062 114 19 32 chr15 46084473 46084789 -39610965 + AluSq SINE Alu 1 312 -1 301 383 16 8 chr15 46087002 46087130 -39608624 + MIR SINE MIR 20 148 -60 2060 114 14 0 chr15 46087769 46088058 -39607696 - AluSq SINE Alu -20 293 1 2146 103 0 23 chr15 46088903 46089205 -39606549 + AluY SINE Alu 1 295 -16 227 33 0 0 chr15 46089207 46089237 -39606517 + HSMAR1 DNA Mariner 1257 1286 -1 4582 146 61 43 chr15 46089256 46090318 -39605436 + L1MB8 LINE L1 5106 6176 -2 2297 119 0 3 chr15 46090338 46090650 -39605104 + AluSq SINE Alu 1 311 -2 548 244 0 7 chr15 46090650 46090785 -39604969 + L1MB3 LINE L1 5995 6128 -55 821 173 0 7 chr15 46090786 46090925 -39604829 + FAM SINE Alu 1 41 -8 21 0 0 0 chr15 46091090 46091111 -39604643 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 46092021 46092051 -39603703 + AT_rich Low_complexity Low_complexity 1 30 0 431 276 124 43 chr15 46094163 46094348 -39601406 + MIR3 SINE MIR 1 200 -8 2005 126 48 0 chr15 46094570 46094864 -39600890 - AluSx SINE Alu -4 308 1 264 204 0 0 chr15 46095074 46095118 -39600636 + L2 LINE L2 3266 3309 -4 189 0 0 0 chr15 46095184 46095205 -39600549 + (TTTTTA)n Simple_repeat Simple_repeat 5 25 0 308 332 228 10 chr15 46096337 46096741 -39599013 + L2 LINE L2 2241 2732 -582 2243 117 3 0 chr15 46097676 46097975 -39597779 + AluJb SINE Alu 1 300 -12 317 296 0 0 chr15 46101178 46101249 -39594505 - L2 LINE L2 -8 3264 3194 499 299 76 5 chr15 46101282 46101466 -39594288 - MIR SINE MIR -20 242 46 2225 65 0 28 chr15 46101746 46102060 -39593694 - AluY SINE Alu 0 306 1 943 254 32 85 chr15 46102383 46102876 -39592878 - L1MC4a LINE L1 -1767 6041 5575 502 266 84 17 chr15 46102964 46103158 -39592596 - MIR SINE MIR -21 241 37 422 168 63 32 chr15 46103255 46103350 -39592404 - MIR SINE MIR 0 262 165 278 241 92 11 chr15 46103479 46103566 -39592188 - L2 LINE L2 -19 3294 3201 341 359 103 0 chr15 46105201 46105357 -39590397 - L2 LINE L2 -2 3270 3099 717 222 25 73 chr15 46105881 46106164 -39589590 + L2 LINE L2 2749 3017 -296 482 222 48 48 chr15 46106166 46106292 -39589462 + L2 LINE L2 3187 3312 -1 579 310 155 33 chr15 46109417 46109810 -39585944 - MARNA DNA Mariner -26 560 120 355 275 44 50 chr15 46110039 46110199 -39585555 + MIR SINE MIR 104 262 0 504 244 42 37 chr15 46111449 46111653 -39584101 + MIR SINE MIR 9 220 -42 349 299 105 8 chr15 46112327 46112506 -39583248 - MIR SINE MIR -50 212 24 2362 91 0 0 chr15 46112575 46112872 -39582882 - AluSg SINE Alu -13 297 1 862 143 0 0 chr15 46113128 46113254 -39582500 - FLAM_C SINE Alu -17 126 1 2194 117 0 16 chr15 46113503 46113820 -39581934 - AluSx SINE Alu 0 312 1 2827 19 0 0 chr15 46114700 46115008 -39580746 - AluYb8 SINE Alu -10 308 1 436 279 19 62 chr15 46115761 46115922 -39579832 - MIR3 SINE MIR -23 185 32 2261 103 0 3 chr15 46116069 46116381 -39579373 + AluY SINE Alu 1 311 0 29 0 0 0 chr15 46116406 46116435 -39579319 + AT_rich Low_complexity Low_complexity 1 29 0 2066 136 0 0 chr15 46116640 46116926 -39578828 + AluSx SINE Alu 1 286 -26 2068 149 0 0 chr15 46117039 46117335 -39578419 - AluJb SINE Alu -16 296 1 2271 111 0 0 chr15 46117421 46117728 -39578026 - AluY SINE Alu -4 307 1 1041 245 156 52 chr15 46117941 46118078 -39577676 - L2 LINE L2 -5 3308 3187 1913 137 20 26 chr15 46118078 46118384 -39577370 + AluJb SINE Alu 1 304 -8 1041 245 156 52 chr15 46118384 46118950 -39576804 - L2 LINE L2 -126 3187 2537 2235 120 0 0 chr15 46119096 46119395 -39576359 + AluSx SINE Alu 1 299 -13 2912 176 8 23 chr15 46119400 46119907 -39575847 + L1MB3 LINE L1 5319 5817 -366 1821 153 38 3 chr15 46119907 46120194 -39575560 + AluSx SINE Alu 1 297 -15 2912 176 8 23 chr15 46120194 46120289 -39575465 + L1MB3 LINE L1 5817 5912 -271 181 333 31 62 chr15 46123145 46123241 -39572513 - L3 LINE CR1 -871 706 614 395 280 31 58 chr15 46124521 46124742 -39571012 - MIR SINE MIR -37 225 7 306 292 97 93 chr15 46124747 46125209 -39570545 - L2 LINE L2 -5 3267 2804 1504 135 212 44 chr15 46125279 46125296 -39570458 - MSTA LTR MaLR -4 424 411 3166 148 25 34 chr15 46125296 46125617 -39570137 - MER41C LTR ERV1 0 554 239 2179 100 7 0 chr15 46125617 46125906 -39569848 - AluSg SINE Alu -19 291 1 3166 148 25 34 chr15 46125906 46126143 -39569611 - MER41C LTR ERV1 -315 239 1 1504 135 212 44 chr15 46126143 46126488 -39569266 - MSTA LTR MaLR -17 411 1 * 2470 180 9 56 chr15 46126488 46127044 -39568710 + MER41C LTR ERV1 26 554 0 377 284 123 94 chr15 46127080 46127198 -39568556 - L2 LINE L2 -667 2647 2534 2273 112 0 0 chr15 46127198 46127492 -39568262 + AluSx SINE Alu 1 294 -18 2229 91 0 3 chr15 46127495 46127781 -39567973 + AluSc SINE Alu 1 285 -24 204 40 0 0 chr15 46127789 46127814 -39567940 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 377 284 123 94 chr15 46127814 46128341 -39567413 - L2 LINE L2 -787 2527 1970 229 336 61 15 chr15 46128620 46128751 -39567003 + MIR SINE MIR 121 257 -5 217 135 0 0 chr15 46128753 46128790 -39566964 + (TC)n Simple_repeat Simple_repeat 2 38 0 2347 100 10 0 chr15 46128792 46129132 -39566622 - AluSx SINE Alu 0 351 9 2409 57 10 7 chr15 46129859 46130160 -39565594 - AluYb8 SINE Alu -16 302 1 357 279 49 25 chr15 46130163 46130285 -39565469 - MIR SINE MIR -89 173 49 269 246 18 0 chr15 46130286 46130343 -39565411 - L2 LINE L2 -5 3308 3251 2350 81 10 7 chr15 46130647 46130942 -39564812 + AluSx SINE Alu 1 296 -16 243 233 69 125 chr15 46130987 46131167 -39564587 - MIR SINE MIR -34 174 12 2382 99 0 0 chr15 46134983 46135287 -39560467 - AluSc SINE Alu -5 304 1 1865 157 3 7 chr15 46135465 46135751 -39560003 + AluJb SINE Alu 1 285 -27 270 0 0 0 chr15 46135751 46135781 -39559973 + (CA)n Simple_repeat Simple_repeat 2 31 0 495 281 84 11 chr15 46135926 46136104 -39559650 - MIR SINE MIR -1 261 71 21 0 0 0 chr15 46136165 46136186 -39559568 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr15 46136670 46136700 -39559054 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1344 185 40 18 chr15 46136702 46136978 -39558776 - AluJb SINE Alu -30 282 1 2082 96 0 65 chr15 46138873 46139197 -39556557 - AluY SINE Alu -8 303 1 180 0 0 0 chr15 46139278 46139298 -39556456 + (A)n Simple_repeat Simple_repeat 1 20 0 475 261 30 87 chr15 46141343 46141677 -39554077 - L2 LINE L2 -339 2975 2661 434 286 127 44 chr15 46141681 46141933 -39553821 - L3 LINE CR1 -43 1534 1262 240 352 44 0 chr15 46142705 46142796 -39552958 + L2 LINE L2 3184 3278 -35 198 91 0 0 chr15 46142814 46142847 -39552907 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 282 311 141 0 chr15 46142853 46142988 -39552766 - L3 LINE CR1 -338 1239 1086 1289 197 9 88 chr15 46143022 46143352 -39552402 - AluJo SINE Alu -8 304 1 345 47 0 0 chr15 46143976 46144019 -39551735 + (TG)n Simple_repeat Simple_repeat 2 44 0 469 272 71 30 chr15 46144033 46144202 -39551552 + MIR SINE MIR 87 262 0 549 253 0 0 chr15 46144600 46144778 -39550976 + G-rich Low_complexity Low_complexity 1 178 0 228 274 5 54 chr15 46144791 46144977 -39550777 + G-rich Low_complexity Low_complexity 2 178 0 * 281 249 24 41 chr15 46144917 46145086 -39550668 + GA-rich Low_complexity Low_complexity 4 169 0 197 182 18 0 chr15 46145239 46145294 -39550460 + G-rich Low_complexity Low_complexity 2 57 0 428 239 31 18 chr15 46145315 46145478 -39550276 + G-rich Low_complexity Low_complexity 6 170 0 197 217 0 14 chr15 46145486 46145555 -39550199 + GA-rich Low_complexity Low_complexity 4 71 0 188 355 65 16 chr15 46145845 46145969 -39549785 + L2 LINE L2 3143 3272 0 231 382 18 9 chr15 46148390 46148500 -39547254 + L3 LINE CR1 1064 1174 -403 279 316 42 42 chr15 46148734 46148902 -39546852 + L3 LINE CR1 1136 1303 -274 240 286 166 65 chr15 46149093 46149310 -39546444 + L3 LINE CR1 1327 1565 -12 357 291 55 18 chr15 46149389 46149499 -39546255 - L2 LINE L2 -20 3252 3139 461 297 160 0 chr15 46149894 46150134 -39545620 - L2 LINE L2 -247 3066 2785 315 308 128 41 chr15 46150116 46150285 -39545469 - MIR3 SINE MIR -61 147 7 * 22 35 0 0 chr15 46150948 46150977 -39544777 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 46151306 46151369 -39544385 + AT_rich Low_complexity Low_complexity 1 63 0 293 398 0 8 chr15 46151786 46151904 -39543850 - MIR SINE MIR -62 146 30 186 43 0 0 chr15 46152225 46152248 -39543506 + (T)n Simple_repeat Simple_repeat 1 23 0 464 319 38 16 chr15 46154266 46154451 -39541303 + MIR SINE MIR 24 212 -50 2350 108 0 0 chr15 46155148 46155454 -39540300 - AluSq SINE Alu -7 306 1 60 0 0 0 chr15 46155817 46155877 -39539877 + AT_rich Low_complexity Low_complexity 1 60 0 1941 163 3 10 chr15 46157837 46158150 -39537604 - AluJb SINE Alu -1 311 1 2807 271 101 13 chr15 46158423 46159621 -39536133 + L2 LINE L2 2009 3297 -16 232 391 23 0 chr15 46159649 46159736 -39536018 - L2 LINE L2 -37 3235 3147 827 73 9 9 chr15 46159823 46159932 -39535822 + AluJb SINE Alu 23 131 -181 1588 189 3 24 chr15 46159940 46160236 -39535518 + AluJo SINE Alu 1 290 -22 2131 132 3 0 chr15 46160246 46160550 -39535204 + AluSx SINE Alu 1 305 -7 417 258 48 37 chr15 46161088 46161359 -39534395 + L1M4 LINE L1 2111 2384 -3762 783 269 131 46 chr15 46161375 46161900 -39533854 + L1M4 LINE L1 2923 3492 -2654 803 276 170 20 chr15 46161902 46162058 -39533696 - L2 LINE L2 -37 3276 3145 1804 91 148 0 chr15 46162058 46162321 -39533433 + AluSx SINE Alu 1 302 0 803 276 170 20 chr15 46162321 46162569 -39533185 - L2 LINE L2 -168 3145 2811 265 295 132 62 chr15 46162743 46162872 -39532882 - L2 LINE L2 -8 3264 3127 2333 81 0 13 chr15 46162973 46163271 -39532483 + AluY SINE Alu 1 294 -17 1421 207 3 10 chr15 46163755 46164054 -39531700 - AluSp SINE Alu -16 297 1 2206 81 3 7 chr15 46164651 46164948 -39530806 + AluSc SINE Alu 1 296 -13 21 0 0 0 chr15 46165214 46165235 -39530519 + AT_rich Low_complexity Low_complexity 1 21 0 1404 188 38 17 chr15 46167025 46167318 -39528436 - AluJb SINE Alu -13 299 1 2270 86 0 56 chr15 46167942 46168266 -39527488 - AluY SINE Alu -5 306 1 22 35 0 0 chr15 46168347 46168376 -39527378 + AT_rich Low_complexity Low_complexity 1 29 0 546 252 65 77 chr15 46170301 46170737 -39525017 - L2 LINE L2 -208 3105 2661 434 286 127 44 chr15 46170741 46170993 -39524761 - L3 LINE CR1 -43 1534 1262 240 352 44 0 chr15 46171765 46171856 -39523898 + L2 LINE L2 3184 3278 -35 198 91 0 0 chr15 46171874 46171907 -39523847 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 282 311 141 0 chr15 46171913 46172048 -39523706 - L3 LINE CR1 -338 1239 1086 1559 178 3 87 chr15 46172082 46172414 -39523340 - AluJo SINE Alu -8 304 1 402 21 0 0 chr15 46173040 46173087 -39522667 + (TG)n Simple_repeat Simple_repeat 2 48 0 469 272 71 30 chr15 46173101 46173270 -39522484 + MIR SINE MIR 87 262 0 211 180 0 60 chr15 46173627 46173677 -39522077 + CT-rich Low_complexity Low_complexity 1 47 0 465 103 0 0 chr15 46173678 46173746 -39522008 + (TC)n Simple_repeat Simple_repeat 1 68 0 1395 173 83 22 chr15 46173746 46174024 -39521730 - AluJb SINE Alu -17 295 1 2081 128 0 0 chr15 46174335 46174608 -39521146 + AluSg SINE Alu 1 273 -37 24 0 0 0 chr15 46178483 46178507 -39517247 + AT_rich Low_complexity Low_complexity 1 24 0 1972 89 26 0 chr15 46178509 46178778 -39516976 - AluY SINE Alu -35 276 1 2235 88 3 23 chr15 46178945 46179251 -39516503 + AluSp SINE Alu 5 304 -9 21 0 0 0 chr15 46179373 46179394 -39516360 + AT_rich Low_complexity Low_complexity 1 21 0 577 258 94 6 chr15 46179403 46179562 -39516192 - MIR SINE MIR -23 239 67 189 74 0 0 chr15 46183085 46183112 -39512642 + (T)n Simple_repeat Simple_repeat 1 27 0 1822 118 78 4 chr15 46183267 46183537 -39512217 + AluSx SINE Alu 1 290 -22 2447 65 16 7 chr15 46184005 46184313 -39511441 + AluY SINE Alu 1 311 0 2162 127 0 16 chr15 46185037 46185353 -39510401 + AluSx SINE Alu 1 311 -1 2087 103 29 0 chr15 46189764 46190067 -39505687 - AluSg SINE Alu 0 311 1 895 150 29 0 chr15 46190177 46190350 -39505404 - L1MB3 LINE L1 -2 6181 6004 742 217 83 79 chr15 46191581 46191730 -39504024 + MIR SINE MIR 1 153 -109 2137 89 0 0 chr15 46191730 46192000 -39503754 + AluSc SINE Alu 1 270 -39 742 217 83 79 chr15 46192000 46192090 -39503664 + MIR SINE MIR 153 241 -21 2080 108 7 10 chr15 46192170 46192467 -39503287 - AluSc SINE Alu -13 296 1 195 42 0 0 chr15 46193709 46193733 -39502021 + (A)n Simple_repeat Simple_repeat 1 24 0 372 22 0 0 chr15 46193960 46194005 -39501749 + (TG)n Simple_repeat Simple_repeat 2 46 0 1943 116 18 4 chr15 46194007 46194284 -39501470 - AluSq SINE Alu -32 281 1 349 245 71 43 chr15 46194328 46194479 -39501275 + MIR3 SINE MIR 44 203 -5 2001 138 0 22 chr15 46195591 46195902 -39499852 + AluSx SINE Alu 1 304 -8 1568 187 7 17 chr15 46195975 46196264 -39499490 + AluJo SINE Alu 6 291 -21 1594 147 19 56 chr15 46196279 46196598 -39499156 - AluJo SINE Alu -5 307 1 430 144 62 0 chr15 46197027 46197124 -39498630 + L1MB7 LINE L1 6073 6175 -9 2344 107 0 0 chr15 46197549 46197859 -39497895 + AluSg SINE Alu 1 310 0 227 390 0 6 chr15 46198123 46198295 -39497459 + (TGG)n Simple_repeat Simple_repeat 1 171 0 1548 189 18 4 chr15 46199307 46199582 -39496172 + AluJo SINE Alu 6 284 -28 603 250 34 45 chr15 46199868 46200044 -39495710 + MIR SINE MIR 9 182 -80 294 335 55 51 chr15 46200522 46200758 -39494996 + L2 LINE L2 2398 2634 -680 427 280 133 43 chr15 46201404 46201444 -39494310 - MIR SINE MIR -13 249 214 1882 165 3 3 chr15 46201444 46201747 -39494007 - AluJb SINE Alu -9 303 1 427 280 133 43 chr15 46201747 46201917 -39493837 - MIR SINE MIR -48 214 20 359 192 55 0 chr15 46202342 46202415 -39493339 - MIR3 SINE MIR -12 196 120 925 197 20 0 chr15 46203236 46203434 -39492320 - L1M4 LINE L1 -3265 2881 2680 1746 151 0 41 chr15 46203438 46203729 -39492025 + AluJb SINE Alu 15 293 -19 1717 184 7 7 chr15 46203793 46204092 -39491662 - AluJb SINE Alu -13 299 1 2096 103 3 75 chr15 46204102 46204421 -39491333 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 46204736 46204758 -39490996 + AT_rich Low_complexity Low_complexity 1 22 0 2192 92 0 0 chr15 46204870 46205176 -39490578 - AluSx SINE Alu 0 306 1 2414 67 0 10 chr15 46205539 46205836 -39489918 + AluY SINE Alu 1 294 -17 605 220 28 28 chr15 46206126 46206303 -39489451 + MER5B DNA MER1_type 1 177 -1 270 369 38 60 chr15 46206450 46206999 -39488755 + L2 LINE L2 2715 3254 -18 206 306 111 37 chr15 46208788 46208896 -39486858 - MIR SINE MIR -62 146 31 266 322 47 81 chr15 46209066 46209679 -39486075 - L2 LINE L2 0 3313 2722 734 241 128 10 chr15 46209733 46209956 -39485798 + MIR SINE MIR 17 262 0 1465 157 26 16 chr15 46210042 46210347 -39485407 - L1PA13 LINE L1 -884 5262 4955 * 6067 83 6 9 chr15 46210330 46211220 -39484534 + L1PA13 LINE L1 5269 6155 -8 22 35 0 0 chr15 46211227 46211256 -39484498 + AT_rich Low_complexity Low_complexity 1 29 0 223 221 26 26 chr15 46211256 46211333 -39484421 + A-rich Low_complexity Low_complexity 2 78 0 276 30 0 0 chr15 46211349 46211382 -39484372 + (CA)n Simple_repeat Simple_repeat 2 34 0 2097 236 25 17 chr15 46211383 46211980 -39483774 + L1MEc LINE L1 124 725 -5671 1522 157 36 95 chr15 46211980 46212550 -39483204 - MLT2A2 LTR ERVL 0 554 11 373 87 0 43 chr15 46212651 46212720 -39483034 + MER41A LTR ERV1 401 466 -88 374 267 7 0 chr15 46212723 46212858 -39482896 + L1MEc LINE L1 810 945 -5451 2350 86 14 0 chr15 46212869 46213161 -39482593 - AluY SINE Alu -15 296 1 747 174 0 36 chr15 46213188 46213326 -39482428 + FLAM_C SINE Alu 1 133 0 1547 256 60 29 chr15 46213389 46213817 -39481937 + L1MEc LINE L1 1432 1886 -4510 2054 88 37 10 chr15 46213817 46214112 -39481642 + AluY SINE Alu 1 303 -8 1547 256 60 29 chr15 46214112 46214305 -39481449 + L1MEc LINE L1 1886 2072 -4324 2122 221 56 30 chr15 46214329 46214896 -39480858 + L1MEc LINE L1 2157 2755 -3460 1928 150 3 33 chr15 46214896 46215203 -39480551 - AluJb SINE Alu 0 312 15 2122 221 56 30 chr15 46215203 46215405 -39480349 + L1MEc LINE L1 2755 2950 -3265 359 192 55 0 chr15 46216226 46216299 -39479455 + MIR3 SINE MIR 120 196 -12 427 280 133 43 chr15 46216724 46216894 -39478860 + MIR SINE MIR 20 214 -48 1873 166 3 3 chr15 46216894 46217196 -39478558 + AluJb SINE Alu 1 302 -10 427 280 133 43 chr15 46217196 46217236 -39478518 + MIR SINE MIR 214 249 -13 294 335 55 51 chr15 46217882 46218118 -39477636 - L2 LINE L2 -680 2634 2398 603 250 34 45 chr15 46218596 46218772 -39476982 - MIR SINE MIR -80 182 9 303 298 96 10 chr15 46219196 46219300 -39476454 - L1M4 LINE L1 -1751 4395 4283 1409 177 48 0 chr15 46219314 46219563 -39476191 - AluJo SINE Alu -3 309 49 2830 19 3 0 chr15 46219610 46219927 -39475827 - AluYb8 SINE Alu 0 318 1 206 62 31 0 chr15 46219944 46219976 -39475778 + (TTC)n Simple_repeat Simple_repeat 1 33 0 858 153 0 0 chr15 46219976 46220100 -39475654 - FLAM_C SINE Alu -18 125 2 1173 202 8 4 chr15 46220100 46220362 -39475392 - L1M4 LINE L1 -1976 4170 3908 1659 142 0 13 chr15 46220390 46220629 -39475125 - AluJb SINE Alu -76 236 1 723 152 23 30 chr15 46221164 46221296 -39474458 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr15 46222595 46222616 -39473138 + AT_rich Low_complexity Low_complexity 1 21 0 2330 55 0 0 chr15 46222714 46223004 -39472750 + L1PA5 LINE L1 5864 6153 -1 449 216 129 0 chr15 46223362 46223478 -39472276 + MIR3 SINE MIR 77 207 -1 473 197 120 42 chr15 46224681 46224823 -39470931 + L2 LINE L2 3123 3275 -38 2336 89 0 3 chr15 46226161 46226463 -39469291 + AluSc SINE Alu 1 301 -8 359 335 126 6 chr15 46226842 46227009 -39468745 + MER5A DNA MER1_type 3 189 0 1217 118 98 147 chr15 46227043 46227349 -39468405 + AluSq SINE Alu 1 291 -22 2488 51 3 0 chr15 46227351 46227646 -39468108 + AluY SINE Alu 1 296 -15 1035 168 128 65 chr15 46227677 46227723 -39468031 + LTR37A LTR ERV1 1 43 -383 2133 120 0 79 chr15 46227723 46228089 -39467665 + MER1B DNA MER1_type 1 337 0 1035 168 128 65 chr15 46228089 46228342 -39467412 + LTR37A LTR ERV1 43 334 -92 1872 141 0 29 chr15 46228342 46228654 -39467100 - AluJb SINE Alu -8 304 2 1035 168 128 65 chr15 46228654 46228753 -39467001 + LTR37A LTR ERV1 334 425 -1 306 311 78 0 chr15 46228785 46228888 -39466866 + L3 LINE CR1 1393 1503 -74 364 242 202 0 chr15 46228966 46229065 -39466689 - MER5B DNA MER1_type 0 178 60 1065 175 54 5 chr15 46229065 46229226 -39466528 - MER96B DNA MER1_type? -183 234 58 279 0 0 0 chr15 46229226 46229257 -39466497 + (TG)n Simple_repeat Simple_repeat 2 32 0 1065 175 54 5 chr15 46229257 46229318 -39466436 - MER96B DNA MER1_type? -359 58 1 2345 109 0 0 chr15 46229332 46229636 -39466118 - AluSx SINE Alu -8 304 1 293 182 0 61 chr15 46229638 46229704 -39466050 + MER5B DNA MER1_type 117 178 0 1139 167 87 48 chr15 46229729 46230040 -39465714 + MER33 DNA MER1_type 1 323 -1 582 293 52 51 chr15 46230250 46230349 -39465405 - L1MDa LINE L1 -4642 1898 1801 2047 115 33 30 chr15 46230349 46230654 -39465100 + AluSg SINE Alu 1 306 -4 582 293 52 51 chr15 46230654 46230731 -39465023 - L1MDa LINE L1 -4739 1801 1726 2316 100 0 0 chr15 46230731 46231031 -39464723 + AluSc SINE Alu 1 300 -9 582 293 52 51 chr15 46231031 46231446 -39464308 - L1MDa LINE L1 -4814 1726 1305 306 213 23 31 chr15 46231553 46231653 -39464101 - L1MDa LINE L1 -4636 1945 1804 359 313 77 10 chr15 46231680 46231875 -39463879 - L1MDa LINE L1 -5328 1202 995 2165 119 0 38 chr15 46231917 46232237 -39463517 - AluSg SINE Alu -2 308 1 1874 169 0 14 chr15 46232268 46232564 -39463190 - AluJb SINE Alu -18 294 3 439 86 0 0 chr15 46232989 46233047 -39462707 + AluSc SINE Alu 29 86 -223 1952 152 13 7 chr15 46233145 46233447 -39462307 - AluSx SINE Alu -8 304 1 307 319 34 25 chr15 46233465 46233584 -39462170 - L1MDa LINE L1 -5940 590 471 255 333 76 0 chr15 46234044 46234176 -39461578 + MIR SINE MIR 72 213 -49 697 161 0 34 chr15 46234621 46234739 -39461015 - FLAM_A SINE Alu -19 123 10 2668 110 5 0 chr15 46235124 46235497 -39460257 + THE1C LTR MaLR 1 375 0 945 276 41 33 chr15 46236112 46236503 -39459251 - MLT1I LTR MaLR -14 395 2 650 284 50 5 chr15 46237322 46237540 -39458214 + MIR SINE MIR 29 256 -6 2336 100 0 3 chr15 46237733 46238043 -39457711 - AluSc SINE Alu 0 309 1 206 311 0 38 chr15 46238109 46238215 -39457539 + CT-rich Low_complexity Low_complexity 3 104 0 1956 133 0 23 chr15 46238290 46238591 -39457163 - AluJb SINE Alu -18 294 1 261 152 0 0 chr15 46238591 46238637 -39457117 + L1ME3A LINE L1 6120 6165 -5 611 219 47 16 chr15 46239581 46239709 -39456045 + L2 LINE L2 3180 3311 -2 239 324 126 27 chr15 46239815 46239926 -39455828 - MIR SINE MIR -66 142 21 2874 151 52 23 chr15 46239947 46240463 -39455291 + LTR26B LTR ERV1 1 531 0 1798 164 24 0 chr15 46240527 46240819 -39454935 - AluJo SINE Alu -13 299 1 1862 164 0 23 chr15 46244089 46244224 -39451530 + AluJo SINE Alu 5 142 -170 1955 136 52 0 chr15 46244224 46244511 -39451243 + AluSg SINE Alu 1 302 -8 1862 164 0 23 chr15 46244511 46244674 -39451080 + AluJo SINE Alu 142 296 -16 4535 163 12 18 chr15 46244683 46245195 -39450559 - L1MB7 LINE L1 -16 6404 5895 2236 86 14 3 chr15 46245195 46245486 -39450268 - AluSc SINE Alu -15 294 1 4535 163 12 18 chr15 46245486 46245954 -39449800 - L1MB7 LINE L1 -525 5895 5426 579 152 0 0 chr15 46245954 46246053 -39449701 - FLAM_A SINE Alu -2 140 42 5669 195 31 30 chr15 46246053 46247528 -39448226 - L1MB7 LINE L1 -1109 5273 3798 2141 113 14 10 chr15 46247542 46247835 -39447919 + AluSx SINE Alu 1 294 -18 1659 193 31 24 chr15 46247845 46248265 -39447489 - L1MA4 LINE L1 -6 6294 5872 1144 189 5 4 chr15 46248449 46248821 -39446933 - MSTB LTR MaLR -4 428 1 1950 128 18 3 chr15 46248825 46249153 -39446601 - L1MB3 LINE L1 -53 6130 5798 3046 257 84 40 chr15 46249164 46249448 -39446306 - L1MB7 LINE L1 -2647 3735 3465 2245 91 3 36 chr15 46249448 46249756 -39445998 - AluSp SINE Alu -15 298 1 3046 257 84 40 chr15 46249756 46250939 -39444815 - L1MB7 LINE L1 -2917 3465 2336 2211 110 0 13 chr15 46250939 46251240 -39444514 + AluSx SINE Alu 1 297 -15 3046 257 84 40 chr15 46251240 46252318 -39443436 - L1MB7 LINE L1 -4046 2336 1037 1987 146 0 13 chr15 46252580 46252882 -39442872 - AluSx SINE Alu -14 298 1 368 364 49 0 chr15 46252902 46253064 -39442690 + MIR3 SINE MIR 33 202 -6 240 235 0 0 chr15 46253975 46254043 -39441711 + (TA)n Simple_repeat Simple_repeat 2 69 0 505 306 55 23 chr15 46256880 46257099 -39438655 - MIR SINE MIR -16 246 21 21 71 0 0 chr15 46258166 46258208 -39437546 + AT_rich Low_complexity Low_complexity 1 42 0 1701 192 98 17 chr15 46259202 46259671 -39436083 - L1MC4 LINE L1 0 8042 7536 1845 171 0 7 chr15 46259845 46260138 -39435616 + AluJo SINE Alu 1 291 -21 241 260 144 48 chr15 46260340 46260444 -39435310 + L2 LINE L2 3153 3266 -6 1802 158 0 30 chr15 46260466 46260770 -39434984 + AluJb SINE Alu 1 295 -17 713 172 8 15 chr15 46261301 46261435 -39434319 - FLAM_C SINE Alu -10 133 1 24 0 0 0 chr15 46262623 46262647 -39433107 + AT_rich Low_complexity Low_complexity 1 24 0 599 279 98 67 chr15 46265368 46265978 -39429776 - L2 LINE L2 -6 3307 2459 2484 211 48 52 chr15 46266050 46266742 -39429012 + L1ME1 LINE L1 5473 6161 -5 369 287 40 40 chr15 46267275 46267425 -39428329 + MIR3 SINE MIR 58 207 -1 316 238 12 25 chr15 46267545 46267625 -39428129 - MIR SINE MIR 0 262 184 7663 27 3 0 chr15 46267918 46269448 -39426306 - L1PA3 LINE L1 -2 6153 4622 27 92 0 0 chr15 46269654 46269730 -39426024 + AT_rich Low_complexity Low_complexity 1 76 0 2327 105 0 0 chr15 46270096 46270401 -39425353 - AluSg SINE Alu -5 305 1 22 0 0 0 chr15 46270652 46270674 -39425080 + AT_rich Low_complexity Low_complexity 1 22 0 5399 114 41 39 chr15 46270972 46271954 -39423800 + L1MD1 LINE L1 5257 6240 -2 474 283 53 7 chr15 46272890 46273042 -39422712 - MIR SINE MIR -12 250 92 289 297 45 63 chr15 46273086 46273197 -39422557 + MIR SINE MIR 7 115 -147 189 269 58 0 chr15 46273388 46273440 -39422314 - MIR SINE MIR -104 104 50 813 210 6 33 chr15 46273519 46273700 -39422054 + MIR SINE MIR 77 252 -10 2163 114 3 0 chr15 46274940 46275238 -39420516 + AluSg SINE Alu 3 301 -9 2360 206 43 6 chr15 46276065 46276603 -39419151 - L1MB7 LINE L1 0 6184 5627 202 180 49 33 chr15 46277328 46277389 -39418365 - L2 LINE L2 0 3272 3211 182 273 36 18 chr15 46277629 46277684 -39418070 - MIR SINE MIR -144 118 63 2102 136 7 0 chr15 46278129 46278437 -39417317 + AluSq SINE Alu 1 310 -3 3242 274 71 42 chr15 46278442 46280420 -39415334 + L1MEc LINE L1 37 2070 -4326 848 269 5 5 chr15 46280446 46280662 -39415092 + MER58A DNA MER1_type 9 224 0 765 226 71 23 chr15 46280662 46280928 -39414826 + L1MEc LINE L1 2097 2375 -4021 1975 111 18 4 chr15 46280974 46281288 -39414466 + AluSx SINE Alu 1 318 0 449 167 57 3 chr15 46281632 46281745 -39414009 + L1ME1 LINE L1 6029 6126 -40 250 271 0 0 chr15 46281908 46281956 -39413798 - MER5A DNA MER1_type -81 108 61 354 274 53 9 chr15 46282134 46282247 -39413507 + L2 LINE L2 3151 3268 -4 928 261 134 49 chr15 46282419 46283066 -39412688 - L2 LINE L2 -3 3310 2625 269 295 0 157 chr15 46283286 46283496 -39412258 - MIR SINE MIR -2 212 30 726 202 0 0 chr15 46283752 46283871 -39411883 + FLAM_A SINE Alu 1 119 -14 218 31 0 31 chr15 46283871 46283903 -39411851 + (CATA)n Simple_repeat Simple_repeat 2 32 0 296 231 31 0 chr15 46284403 46284468 -39411286 - Tigger8 DNA MER2_type -247 419 353 1272 143 40 14 chr15 46284550 46284773 -39410981 - MER30 DNA MER1_type 0 230 2 246 275 117 42 chr15 46284895 46285015 -39410739 - L2 LINE L2 -5 3267 3139 2130 122 3 0 chr15 46285182 46285478 -39410276 - AluSx SINE Alu -15 297 1 646 240 0 0 chr15 46285798 46285923 -39409831 - L2 LINE L2 0 3313 3189 197 257 68 27 chr15 46285964 46286038 -39409716 + MIR SINE MIR 185 261 -1 6722 26 0 0 chr15 46289135 46289913 -39405841 + L1PA3 LINE L1 5374 6151 -4 911 199 0 47 chr15 46290933 46291124 -39404630 + MER58A DNA MER1_type 43 224 0 227 200 0 22 chr15 46291170 46291215 -39404539 - L2 LINE L2 -10 3262 3219 2439 85 0 3 chr15 46291339 46291645 -39404109 + AluSp SINE Alu 1 305 -8 947 238 81 0 chr15 46291900 46292135 -39403619 - MIR SINE MIR 0 262 9 253 305 85 24 chr15 46292163 46292245 -39403509 + L2 LINE L2 3141 3227 -45 400 281 9 9 chr15 46292579 46292693 -39403061 - MIR3 SINE MIR -28 180 67 2177 106 7 7 chr15 46292831 46293133 -39402621 - AluSx SINE Alu -10 302 1 461 205 100 105 chr15 46293490 46293680 -39402074 - MIR SINE MIR -8 254 66 413 172 82 0 chr15 46294436 46294564 -39401190 + L1MEc LINE L1 1013 1127 -5091 21 0 0 0 chr15 46294612 46294633 -39401121 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 46295168 46295188 -39400566 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 245 288 0 0 chr15 46295971 46296030 -39399724 - L2 LINE L2 0 3272 3214 303 319 119 38 chr15 46296302 46296462 -39399292 - MER5A DNA MER1_type -16 173 1 556 245 90 98 chr15 46296526 46296771 -39398983 + MIR SINE MIR 20 262 0 526 245 13 25 chr15 46296805 46296964 -39398790 + MIR SINE MIR 94 250 -12 260 187 9 75 chr15 46297415 46297522 -39398232 + L1MC4 LINE L1 7943 8042 0 463 259 58 13 chr15 46297614 46297788 -39397966 + MIR SINE MIR 20 204 -58 391 333 87 13 chr15 46298253 46298403 -39397351 + MER5A DNA MER1_type 25 185 -4 327 231 70 96 chr15 46298411 46298567 -39397187 - MARNA DNA Mariner -414 172 21 775 181 0 14 chr15 46298895 46299033 -39396721 - FLAM_C SINE Alu -7 136 1 617 237 112 0 chr15 46299550 46299702 -39396052 + MIR3 SINE MIR 31 199 -9 856 272 196 37 chr15 46299882 46300096 -39395658 - L2 LINE L2 -3 3310 3131 2314 109 0 3 chr15 46300096 46300399 -39395355 + AluSp SINE Alu 1 302 -11 856 272 196 37 chr15 46300399 46300763 -39394991 - L2 LINE L2 -182 3131 2624 187 291 36 0 chr15 46300816 46300871 -39394883 - L2 LINE L2 -35 3237 3181 2301 79 0 7 chr15 46301567 46301858 -39393896 - AluSc SINE Alu -20 289 1 1723 175 10 33 chr15 46302677 46302980 -39392774 + AluJo SINE Alu 1 296 -16 750 168 16 0 chr15 46303144 46303269 -39392485 - FLAM_A SINE Alu -6 127 1 778 137 17 0 chr15 46304682 46304799 -39390955 - FLAM_A SINE Alu -11 122 4 2480 92 0 0 chr15 46305141 46305447 -39390307 - AluSx SINE Alu -6 306 1 410 253 20 10 chr15 46306010 46306109 -39389645 + MIR SINE MIR 48 147 -115 264 149 0 0 chr15 46306290 46306337 -39389417 + (CA)n Simple_repeat Simple_repeat 2 48 0 261 287 211 0 chr15 46306350 46306559 -39389195 + HAL1 LINE L1 114 366 -2141 1163 238 107 31 chr15 46306762 46307250 -39388504 + HAL1 LINE L1 536 1060 -1447 2267 96 14 0 chr15 46307280 46307573 -39388181 + AluY SINE Alu 1 297 -14 263 231 44 0 chr15 46307602 46307693 -39388061 + HAL1 LINE L1 1195 1289 -1218 2402 88 0 0 chr15 46308097 46308393 -39387361 + AluSx SINE Alu 1 296 -16 257 346 45 23 chr15 46308529 46308662 -39387092 + MIR SINE MIR 20 155 -107 583 311 40 0 chr15 46308663 46308814 -39386940 - L2 LINE L2 0 3272 3116 369 0 0 0 chr15 46309058 46309099 -39386655 + (A)n Simple_repeat Simple_repeat 1 41 0 1121 210 21 9 chr15 46309342 46309575 -39386179 + MER46A DNA MER2_type 1 236 0 357 323 56 107 chr15 46310315 46310653 -39385101 + L3 LINE CR1 1214 1534 -43 658 196 0 36 chr15 46310662 46310800 -39384954 - L2 LINE L2 0 3313 3181 1056 146 35 0 chr15 46310837 46311008 -39384746 + FRAM SINE Alu 1 176 0 181 296 0 0 chr15 46311043 46311087 -39384667 - L2 LINE L2 -281 3032 2989 323 254 94 65 chr15 46311580 46311718 -39384036 - MIR SINE MIR -116 146 5 685 258 101 20 chr15 46312182 46312563 -39383191 - MLT1H1 LTR MaLR -2 553 145 264 313 170 0 chr15 46312662 46312774 -39382980 - L2 LINE L2 -224 3048 2918 2321 101 0 0 chr15 46313125 46313413 -39382341 + AluSx SINE Alu 1 288 -24 2297 86 29 3 chr15 46313416 46313767 -39381987 - L1MA3 LINE L1 -7 6298 5939 404 252 0 13 chr15 46314869 46315020 -39380734 + (CATA)n Simple_repeat Simple_repeat 2 150 0 344 56 37 0 chr15 46315780 46315834 -39379920 - L1PA10 LINE L1 -3 6165 6110 274 283 22 22 chr15 46316229 46316321 -39379433 + MIR SINE MIR 34 125 -137 22 35 0 0 chr15 46317935 46317964 -39377790 + AT_rich Low_complexity Low_complexity 1 29 0 818 205 12 6 chr15 46319025 46319213 -39376541 - AluJb SINE Alu 0 312 126 568 306 87 46 chr15 46320786 46321244 -39374510 - MARNA DNA Mariner -7 579 103 197 309 176 12 chr15 46321264 46321429 -39374325 + MIR3 SINE MIR 17 208 0 2178 114 0 3 chr15 46321560 46321849 -39373905 + AluSx SINE Alu 1 288 -24 183 239 62 124 chr15 46321903 46322016 -39373738 - MIR SINE MIR -67 141 36 23 0 0 0 chr15 46322331 46322354 -39373400 + AT_rich Low_complexity Low_complexity 1 23 0 2288 58 41 20 chr15 46324132 46324425 -39371329 + AluY SINE Alu 1 299 -12 614 248 206 23 chr15 46325097 46325311 -39370443 - L3 LINE CR1 -4 1573 1321 307 311 38 60 chr15 46325460 46325683 -39370071 + MIR SINE MIR 7 222 -40 219 274 101 0 chr15 46326304 46326393 -39369361 - MIR SINE MIR -73 135 53 321 314 73 91 chr15 46330094 46330381 -39365373 - L2 LINE L2 -8 3264 2983 521 290 85 6 chr15 46331520 46331696 -39364058 - MIR3 SINE MIR -3 205 16 2393 111 0 0 chr15 46332489 46332796 -39362958 - AluSx SINE Alu -5 307 1 272 293 152 0 chr15 46333177 46333276 -39362478 + MIR3 SINE MIR 47 160 -48 2014 157 0 0 chr15 46333642 46333947 -39361807 + AluJo SINE Alu 1 305 -7 369 0 0 0 chr15 46334067 46334108 -39361646 + (TA)n Simple_repeat Simple_repeat 1 41 0 2454 99 0 0 chr15 46334114 46334426 -39361328 - AluSx SINE Alu 0 312 1 191 317 50 0 chr15 46334755 46334815 -39360939 + MIR SINE MIR 58 120 -88 224 339 0 0 chr15 46334844 46334909 -39360845 + L2 LINE L2 3248 3312 -1 1005 142 0 7 chr15 46335103 46335251 -39360503 + FRAM SINE Alu 13 159 -17 374 314 89 64 chr15 46335343 46335391 -39360363 + L3 LINE CR1 933 978 -599 2291 122 0 0 chr15 46335391 46335694 -39360060 + AluSx SINE Alu 1 303 -9 374 314 89 64 chr15 46335694 46335881 -39359873 + L3 LINE CR1 978 1174 -403 243 320 0 49 chr15 46336187 46336309 -39359445 - MLT1K LTR MaLR -385 203 88 647 294 152 46 chr15 46336381 46336543 -39359211 + L3 LINE CR1 1190 1334 -243 2350 78 10 0 chr15 46336543 46336836 -39358918 - AluY SINE Alu -15 296 1 647 294 152 46 chr15 46336836 46336996 -39358758 + L3 LINE CR1 1334 1546 -31 185 319 115 32 chr15 46338462 46338619 -39357135 - MIR3 SINE MIR -26 182 13 353 258 67 0 chr15 46338665 46338754 -39357000 + MIR3 SINE MIR 85 179 -29 198 352 0 42 chr15 46341544 46341615 -39354139 - L2 LINE L2 -84 3188 3121 218 331 35 21 chr15 46341727 46341872 -39353882 + MIR SINE MIR 56 202 -60 29 28 0 0 chr15 46344039 46344075 -39351679 + AT_rich Low_complexity Low_complexity 1 36 0 509 273 105 12 chr15 46345152 46345324 -39350430 + MER5A DNA MER1_type 1 188 -1 212 0 36 0 chr15 46346688 46346716 -39349038 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1964 103 0 4 chr15 46346718 46346981 -39348773 - AluSq SINE Alu -20 293 32 2150 129 0 0 chr15 46347043 46347353 -39348401 + AluSg SINE Alu 1 310 0 4170 165 62 26 chr15 46347353 46348859 -39346895 + L1MB7 LINE L1 4503 6066 -118 246 357 138 50 chr15 46349072 46349369 -39346385 - L2 LINE L2 -1 3271 2949 2053 107 3 24 chr15 46349633 46349923 -39345831 - AluSx SINE Alu -28 284 1 4445 127 68 27 chr15 46351024 46351161 -39344593 - L1MA9 LINE L1 0 6312 6182 423 0 0 0 chr15 46351161 46351208 -39344546 + (TG)n Simple_repeat Simple_repeat 2 48 0 4445 127 68 27 chr15 46351208 46351929 -39343825 - L1MA9 LINE L1 -130 6182 5419 189 411 47 0 chr15 46352208 46352315 -39343439 - L2 LINE L2 -38 3234 3123 185 327 221 30 chr15 46352613 46353075 -39342679 - L2 LINE L2 -418 2896 2347 196 186 34 68 chr15 46353414 46353473 -39342281 - MIR SINE MIR -56 152 96 2076 147 0 3 chr15 46353922 46354234 -39341520 + AluJb SINE Alu 1 311 -1 201 158 0 0 chr15 46358267 46358305 -39337449 + T-rich Low_complexity Low_complexity 1 38 0 194 0 39 0 chr15 46359303 46359329 -39336425 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 837 132 0 165 chr15 46359597 46359724 -39336030 - L1MD2 LINE L1 -10 6349 6279 2234 105 0 0 chr15 46359724 46360009 -39335745 + AluSc SINE Alu 1 285 -24 837 132 0 165 chr15 46360009 46360123 -39335631 - L1MD2 LINE L1 -80 6279 6148 22 88 0 0 chr15 46365523 46365580 -39330174 + AT_rich Low_complexity Low_complexity 1 57 0 393 22 0 0 chr15 46368803 46368849 -39326905 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 54 0 0 chr15 46368912 46368949 -39326805 + AT_rich Low_complexity Low_complexity 1 37 0 211 268 73 49 chr15 46370328 46370451 -39325303 - L2 LINE L2 -213 3059 2934 195 42 0 0 chr15 46370843 46370867 -39324887 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 21 0 0 0 chr15 46371321 46371342 -39324412 + AT_rich Low_complexity Low_complexity 1 21 0 193 233 27 55 chr15 46371485 46371558 -39324196 + MIR SINE MIR 79 149 -59 439 80 0 15 chr15 46373092 46373164 -39322590 - MER92C LTR ERV1 0 554 484 424 228 53 118 chr15 46373161 46373389 -39322365 - MER92B LTR ERV1 -423 213 1 * 313 326 43 76 chr15 46374801 46374985 -39320769 + MER5B DNA MER1_type 1 178 0 185 254 45 0 chr15 46374995 46375062 -39320692 + L2 LINE L2 3179 3248 -65 279 365 51 15 chr15 46377786 46377923 -39317831 - L2 LINE L2 -24 3248 3107 219 276 105 48 chr15 46378275 46378380 -39317374 + L2 LINE L2 3160 3270 -2 498 221 37 22 chr15 46378752 46378888 -39316866 - MIR SINE MIR -51 211 74 1744 148 13 30 chr15 46379586 46379890 -39315864 - AluJb SINE Alu -13 299 1 336 297 27 0 chr15 46380495 46380644 -39315110 + MIR SINE MIR 20 171 -62 366 309 127 0 chr15 46381346 46381511 -39314243 + MIR SINE MIR 77 262 0 294 366 17 17 chr15 46383110 46383282 -39312472 + MIR SINE MIR 85 256 -6 1736 159 17 0 chr15 46383340 46383635 -39312119 + AluJb SINE Alu 1 300 -12 489 237 99 24 chr15 46383769 46383980 -39311774 - L1ME4a LINE L1 -224 5966 5740 225 269 108 59 chr15 46384028 46384081 -39311673 - L1ME4a LINE L1 -2322 5555 5506 2156 82 17 7 chr15 46384081 46384373 -39311381 + AluSq SINE Alu 1 295 -18 225 269 108 59 chr15 46384373 46384505 -39311249 - L1ME4a LINE L1 -2371 5506 5361 344 276 60 8 chr15 46386095 46386229 -39309525 + MIR SINE MIR 121 261 -1 843 197 20 0 chr15 46387797 46387944 -39307810 + FAM SINE Alu 25 174 -11 1486 278 72 14 chr15 46389875 46390717 -39305037 - L1ME4a LINE L1 -2983 3232 2342 338 286 122 10 chr15 46390743 46390915 -39304839 - L1ME4a LINE L1 -4067 2329 2131 2046 162 115 16 chr15 46390915 46391297 -39304457 - MSTA LTR MaLR -4 424 5 338 286 122 10 chr15 46391297 46391320 -39304434 - L1ME4a LINE L1 -4265 2131 2112 371 235 61 26 chr15 46391386 46391501 -39304253 - MLT1J LTR MaLR -14 497 379 745 282 91 16 chr15 46391510 46391762 -39303992 - MLT1J LTR MaLR -240 271 1 357 300 75 15 chr15 46392031 46392231 -39303523 - HAL1 LINE L1 -847 1660 1449 2218 102 0 0 chr15 46392334 46392628 -39303126 - AluSx SINE Alu -18 294 1 2365 81 0 0 chr15 46393534 46393842 -39301912 + AluSg SINE Alu 1 308 -2 328 333 172 11 chr15 46396215 46396395 -39299359 + MIR SINE MIR 41 249 -13 333 263 68 8 chr15 46397597 46397715 -39298039 + MIR SINE MIR 22 146 -62 257 250 207 21 chr15 46398176 46398316 -39297438 + MIR3 SINE MIR 22 187 -21 193 339 25 34 chr15 46401073 46401191 -39294563 + MIR SINE MIR 61 177 -85 209 211 105 63 chr15 46402168 46402263 -39293491 - MIR SINE MIR -77 185 87 * 447 186 132 77 chr15 46402249 46402469 -39293285 + L2 LINE L2 2307 2538 -776 233 271 43 0 chr15 46402489 46402559 -39293195 + L2 LINE L2 2864 2936 -378 1680 160 17 3 chr15 46402688 46402981 -39292773 + AluJb SINE Alu 1 297 -15 701 271 96 60 chr15 46403055 46403421 -39292333 + L2 LINE L2 2932 3310 -3 726 233 43 29 chr15 46403878 46404083 -39291671 - MIR SINE MIR -34 228 23 200 209 0 23 chr15 46404095 46404138 -39291616 + (CA)n Simple_repeat Simple_repeat 1 42 0 326 311 34 8 chr15 46404308 46404427 -39291327 + MIR3 SINE MIR 73 194 -14 2282 92 10 0 chr15 46404940 46405245 -39290509 - AluSp SINE Alu -5 308 1 255 197 145 0 chr15 46405274 46405350 -39290404 + L2 LINE L2 3151 3237 -35 1919 130 31 0 chr15 46406243 46406536 -39289218 + AluJb SINE Alu 1 302 -10 495 277 109 107 chr15 46408007 46408354 -39287400 + L2 LINE L2 2924 3271 -1 1664 189 3 0 chr15 46408443 46408734 -39287020 - AluJb SINE Alu -20 292 1 21 36 0 0 chr15 46408826 46408854 -39286900 + AT_rich Low_complexity Low_complexity 1 28 0 2380 82 3 13 chr15 46409023 46409339 -39286415 + AluSp SINE Alu 1 313 0 610 241 14 7 chr15 46409345 46409490 -39286264 + MIR SINE MIR 12 157 -105 687 276 44 13 chr15 46409948 46410177 -39285577 + MIR SINE MIR 3 244 -18 473 252 124 41 chr15 46410232 46410450 -39285304 + L2 LINE L2 3075 3310 -3 4557 176 33 17 chr15 46410618 46411906 -39283848 + L1MB8 LINE L1 4865 6162 -16 231 254 143 0 chr15 46412202 46412265 -39283489 + MER96 DNA MER1_type? 104 175 0 1892 148 0 16 chr15 46412311 46412616 -39283138 + AluSx SINE Alu 1 300 -12 235 253 33 66 chr15 46413028 46413119 -39282635 - L2 LINE L2 -5 3267 3180 1018 146 39 34 chr15 46413547 46413708 -39282046 - AluJo SINE Alu -20 292 133 432 37 0 0 chr15 46413708 46413762 -39281992 + (TC)n Simple_repeat Simple_repeat 2 55 0 378 0 0 0 chr15 46413761 46413803 -39281951 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 1018 146 39 34 chr15 46413762 46413846 -39281908 - AluJo SINE Alu -179 133 87 267 289 19 10 chr15 46415208 46415312 -39280442 + MIR SINE MIR 43 147 -61 233 191 44 59 chr15 46415481 46415549 -39280205 + MIR SINE MIR 118 184 -78 21 0 0 0 chr15 46415851 46415872 -39279882 + GC_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr15 46417869 46417915 -39277839 + GC_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr15 46418097 46418122 -39277632 + GC_rich Low_complexity Low_complexity 1 25 0 250 241 0 0 chr15 46419996 46420050 -39275704 + CT-rich Low_complexity Low_complexity 3 56 0 286 302 116 31 chr15 46420204 46420333 -39275421 + MIR3 SINE MIR 17 156 -52 218 256 39 0 chr15 46421325 46421403 -39274351 + (CGG)n Simple_repeat Simple_repeat 2 82 0 32 95 0 0 chr15 46421755 46421850 -39273904 + GC_rich Low_complexity Low_complexity 1 95 0 245 148 0 19 chr15 46422014 46422068 -39273686 + (CGG)n Simple_repeat Simple_repeat 2 54 0 219 217 0 0 chr15 46422184 46422230 -39273524 + (CCG)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr15 46422614 46422643 -39273111 + GC_rich Low_complexity Low_complexity 1 29 0 210 286 0 0 chr15 46423994 46424043 -39271711 + GA-rich Low_complexity Low_complexity 6 54 0 23 33 0 0 chr15 46427429 46427459 -39268295 + AT_rich Low_complexity Low_complexity 1 30 0 328 273 129 58 chr15 46428077 46428216 -39267538 + MIR3 SINE MIR 11 159 -49 216 0 0 0 chr15 46429186 46429210 -39266544 + (TAA)n Simple_repeat Simple_repeat 1 24 0 187 306 14 68 chr15 46430002 46430149 -39265605 + MIR3 SINE MIR 6 144 -64 986 213 81 5 chr15 46432334 46432545 -39263209 + MIR SINE MIR 15 241 -21 272 244 61 24 chr15 46432891 46432973 -39262781 - MIR SINE MIR -89 119 35 863 142 8 0 chr15 46433012 46433146 -39262608 - AluSg SINE Alu -175 135 1 1010 0 0 0 chr15 46434583 46434690 -39261064 - U6 snRNA snRNA 0 107 1 307 316 73 29 chr15 46435481 46435617 -39260137 - MIR SINE MIR -101 161 20 189 0 0 0 chr15 46435617 46435638 -39260116 + (T)n Simple_repeat Simple_repeat 1 21 0 194 321 188 0 chr15 46435742 46435854 -39259900 - L2 LINE L2 -1 3312 3180 1935 95 114 7 chr15 46436573 46436846 -39258908 - AluSg SINE Alu -6 304 3 1053 150 12 23 chr15 46436850 46437006 -39258748 - AluSg/x SINE Alu -21 289 134 2162 125 3 0 chr15 46437006 46437310 -39258444 - AluSx SINE Alu -7 305 1 1053 150 12 23 chr15 46437310 46437326 -39258428 - AluSg/x SINE Alu -176 134 119 340 308 31 44 chr15 46437356 46437515 -39258239 + MIR3 SINE MIR 45 201 -7 204 333 40 10 chr15 46439044 46439143 -39256611 + MIR SINE MIR 120 221 -41 449 245 26 19 chr15 46439541 46439675 -39256079 - MIR SINE MIR -62 146 33 267 268 51 72 chr15 46440165 46440303 -39255451 + MIR SINE MIR 84 218 -44 434 227 184 7 chr15 46440972 46441113 -39254641 - MIR SINE MIR -10 252 87 1957 115 39 62 chr15 46441242 46441626 -39254128 + THE1C LTR MaLR 1 375 0 461 240 174 10 chr15 46442127 46442323 -39253431 - MLT1J LTR MaLR -6 505 278 319 237 129 9 chr15 46442841 46442970 -39252784 + L1M1 LINE L1 5295 5438 -739 2424 135 13 41 chr15 46442994 46443461 -39252293 - MER49 LTR ERV1 0 923 470 1732 44 0 24 chr15 46443561 46443766 -39251988 - AluY SINE Alu -111 200 1 25 0 0 0 chr15 46444365 46444390 -39251364 + AT_rich Low_complexity Low_complexity 1 25 0 1718 152 0 93 chr15 46444765 46445108 -39250646 + AluJo SINE Alu 2 312 0 877 135 135 0 chr15 46445325 46445481 -39250273 + MSTA LTR MaLR 1 177 -251 1963 83 117 11 chr15 46445482 46445748 -39250006 - AluSg SINE Alu -14 296 3 1045 151 12 23 chr15 46445752 46445907 -39249847 - AluSg/x SINE Alu -22 290 136 2125 127 3 0 chr15 46445907 46446207 -39249547 - AluSx SINE Alu -11 301 1 1045 151 12 23 chr15 46446207 46446223 -39249531 - AluSg/x SINE Alu -176 136 121 328 308 31 44 chr15 46446253 46446412 -39249342 + MIR3 SINE MIR 45 201 -7 204 333 40 10 chr15 46447941 46448040 -39247714 + MIR SINE MIR 120 221 -41 449 245 26 19 chr15 46448438 46448572 -39247182 - MIR SINE MIR -62 146 33 267 268 51 72 chr15 46449062 46449200 -39246554 + MIR SINE MIR 84 218 -44 434 227 184 7 chr15 46449869 46450010 -39245744 - MIR SINE MIR -10 252 87 2334 108 40 32 chr15 46450139 46450511 -39245243 + THE1C LTR MaLR 1 375 0 470 240 174 10 chr15 46451012 46451208 -39244546 - MLT1J LTR MaLR -6 505 278 319 237 129 9 chr15 46451725 46451854 -39243900 + L1M1 LINE L1 5295 5438 -739 4575 126 54 54 chr15 46451878 46452653 -39243101 - MER49 LTR ERV1 0 923 146 898 211 0 6 chr15 46452653 46452819 -39242935 + FRAM SINE Alu 1 165 -1 4575 126 54 54 chr15 46452819 46452966 -39242788 - MER49 LTR ERV1 -776 147 1 1679 232 34 27 chr15 46452970 46453307 -39242447 + L1ME3A LINE L1 5493 5826 -344 544 103 0 13 chr15 46453307 46453385 -39242369 - MADE1 DNA Mariner 0 80 4 1679 232 34 27 chr15 46453385 46453396 -39242358 + L1ME3A LINE L1 5826 5835 -335 2309 141 17 50 chr15 46453396 46453799 -39241955 + MLT1B LTR MaLR 1 390 0 1679 232 34 27 chr15 46453799 46453923 -39241831 + L1ME3A LINE L1 5835 5969 -201 322 123 53 0 chr15 46454013 46454070 -39241684 - MLT1B LTR MaLR -11 379 320 290 254 53 35 chr15 46454072 46454186 -39241568 + L1ME3A LINE L1 6048 6163 -7 184 250 0 23 chr15 46454197 46454285 -39241469 + GA-rich Low_complexity Low_complexity 3 88 0 192 342 13 0 chr15 46454428 46454509 -39241245 + MIR3 SINE MIR 73 155 -53 340 259 24 0 chr15 46454527 46454612 -39241142 + L2 LINE L2 2989 3075 -238 1053 176 11 6 chr15 46454615 46454791 -39240963 + AluJb SINE Alu 134 310 -2 1952 121 128 41 chr15 46454806 46455159 -39240595 + MSTA LTR MaLR 1 393 -35 2265 118 0 3 chr15 46455159 46455456 -39240298 - AluSx SINE Alu -16 296 1 1952 121 128 41 chr15 46455456 46455492 -39240262 + MSTA LTR MaLR 393 424 -4 422 286 137 6 chr15 46455498 46455680 -39240074 + L2 LINE L2 3094 3299 -14 2134 134 7 3 chr15 46455690 46455995 -39239759 + AluSx SINE Alu 5 310 -2 2121 176 47 117 chr15 46456631 46456745 -39239009 - LTR9 LTR ERV1 0 612 492 2170 131 16 3 chr15 46456745 46457050 -39238704 + AluSc SINE Alu 1 309 0 2121 176 47 117 chr15 46457050 46457593 -39238161 - LTR9 LTR ERV1 -120 492 1 650 194 0 57 chr15 46457626 46457774 -39237980 - FLAM_C SINE Alu 0 141 1 236 218 35 46 chr15 46458450 46458537 -39237217 + T-rich Low_complexity Low_complexity 3 88 0 2495 85 0 0 chr15 46458567 46458872 -39236882 - AluSg SINE Alu -5 305 1 2426 84 3 0 chr15 46458873 46459170 -39236584 - AluSg SINE Alu -12 298 1 695 183 25 0 chr15 46459179 46459299 -39236455 - FLAM_A SINE Alu -10 123 1 2195 132 103 5 chr15 46459411 46459798 -39235956 + MSTA LTR MaLR 4 428 0 2081 130 7 7 chr15 46460093 46460386 -39235368 + AluSx SINE Alu 1 293 -19 2210 134 7 0 chr15 46460388 46460693 -39235061 + AluSx SINE Alu 1 307 -5 1139 215 135 60 chr15 46460695 46461146 -39234608 - MLT1G3 LTR MaLR -9 521 37 224 235 39 0 chr15 46461190 46461241 -39234513 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1496 119 141 72 chr15 46461424 46461701 -39234053 + AluSx SINE Alu 1 296 -16 450 178 0 0 chr15 46461708 46461781 -39233973 + AluJ/FLAM SINE Alu 2 74 -238 1209 165 42 0 chr15 46461781 46462017 -39233737 + LTR37A LTR ERV1 181 426 0 1555 105 0 9 chr15 46462307 46462517 -39233237 - AluYa5 SINE Alu -11 300 93 586 224 109 81 chr15 46462614 46462730 -39233024 - MIR SINE MIR 0 262 151 1770 149 52 10 chr15 46462730 46463018 -39232736 + AluJb SINE Alu 1 300 -12 586 224 109 81 chr15 46463018 46463124 -39232630 - MIR SINE MIR -111 151 35 200 250 0 0 chr15 46463222 46463270 -39232484 - L2 LINE L2 -4 3268 3221 1343 228 30 33 chr15 46464202 46464420 -39231334 - MER58B DNA MER1_type -2079 341 123 2344 108 0 0 chr15 46464420 46464715 -39231039 - AluSx SINE Alu -17 295 1 1343 228 30 33 chr15 46464715 46464830 -39230924 - MER58B DNA MER1_type -2297 123 9 2348 116 0 0 chr15 46465331 46465633 -39230121 + AluSx SINE Alu 1 302 -10 390 209 9 26 chr15 46465962 46466077 -39229677 - L1MA4A LINE L1 -2 6301 6189 1329 192 70 3 chr15 46466077 46466390 -39229364 - L1PB4 LINE L1 -98 6058 5725 417 278 50 39 chr15 46466600 46466780 -39228974 + MER92C LTR ERV1 1 182 -372 296 172 109 0 chr15 46466834 46466898 -39228856 + MER92C LTR ERV1 484 554 0 223 307 104 17 chr15 46467605 46467720 -39228034 - MIR SINE MIR -62 146 20 2378 72 0 0 chr15 46467899 46468189 -39227565 - AluSg SINE Alu -20 290 1 2326 113 3 0 chr15 46468230 46468540 -39227214 - AluSx SINE Alu 0 312 2 941 161 0 0 chr15 46468789 46468932 -39226822 + FLAM_C SINE Alu 1 143 0 261 319 66 0 chr15 46469001 46469092 -39226662 + MIR SINE MIR 109 205 -57 1351 252 52 9 chr15 46469118 46469542 -39226212 - L1ME4a LINE L1 -174 5947 5506 230 305 95 68 chr15 46469547 46469927 -39225827 - L2 LINE L2 -1595 1719 1330 524 278 104 86 chr15 46470171 46470363 -39225391 + L1M4 LINE L1 3544 3731 -2415 2223 118 7 3 chr15 46470363 46470660 -39225094 + AluSx SINE Alu 1 298 -14 524 278 104 86 chr15 46470660 46470961 -39224793 + L1M4 LINE L1 3731 4025 -2121 1985 155 0 0 chr15 46470961 46471251 -39224503 + AluJo SINE Alu 1 290 -22 524 278 104 86 chr15 46471251 46472024 -39223730 + L1M4 LINE L1 4025 4834 -1312 2353 151 55 51 chr15 46472141 46472900 -39222854 + MER21A LTR ERV1 1 883 -48 262 307 70 19 chr15 46472924 46473181 -39222573 + L1M4 LINE L1 5004 5273 -873 1498 215 12 24 chr15 46473193 46473532 -39222222 - LTR27 LTR ERV1 -2 634 300 293 188 16 0 chr15 46473507 46473571 -39222183 - LTR1 LTR ERV1 -600 185 121 * 668 210 54 18 chr15 46473597 46473764 -39221990 - LTR28 LTR ERV1 -847 173 1 1163 174 5 0 chr15 46473766 46473973 -39221781 + MER2 DNA MER2_type 3 210 -135 1180 168 0 46 chr15 46474011 46474046 -39221708 + AluJb SINE Alu 107 142 -170 1776 152 72 0 chr15 46474046 46474322 -39221432 + AluSx SINE Alu 1 296 -16 1180 168 0 46 chr15 46474322 46474483 -39221271 + AluJb SINE Alu 142 294 -18 3070 226 60 14 chr15 46474487 46475351 -39220403 + L1ME3A LINE L1 2216 3119 -3027 580 222 100 11 chr15 46475549 46475729 -39220025 + L1ME3A LINE L1 5601 5796 -374 206 178 27 27 chr15 46475730 46475803 -39219951 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 1600 183 60 55 chr15 46475872 46476255 -39219499 + MLT1B LTR MaLR 6 390 0 241 157 39 0 chr15 46476255 46476306 -39219448 + L1ME3A LINE L1 5844 5896 -274 2187 136 0 0 chr15 46476320 46476621 -39219133 - AluSx SINE Alu -11 301 1 23 54 0 0 chr15 46476625 46476662 -39219092 + AT_rich Low_complexity Low_complexity 1 37 0 471 125 42 0 chr15 46476662 46476734 -39219020 - AluJb SINE Alu -194 118 44 2102 137 13 0 chr15 46477033 46477333 -39218421 - AluSx SINE Alu -8 304 1 234 279 51 13 chr15 46477417 46477496 -39218258 + MER54A LTR ERVL 156 237 -664 329 115 131 0 chr15 46477528 46477589 -39218165 - MER51C-int LTR ERV1 -7747 69 1 648 190 10 117 chr15 46477589 46477825 -39217929 - MER51C LTR ERV1 0 640 188 261 271 0 0 chr15 46478223 46478293 -39217461 + L1ME3A LINE L1 6096 6165 -5 1413 263 70 30 chr15 46478386 46479081 -39216673 + L1ME LINE L1 2198 2956 -3259 2046 141 27 0 chr15 46479081 46479379 -39216375 - AluSx SINE Alu -6 306 1 1413 263 70 30 chr15 46479379 46479589 -39216165 + L1ME LINE L1 2956 3156 -3059 684 150 57 71 chr15 46479603 46479743 -39216011 - AluSg/x SINE Alu -19 291 154 239 286 185 0 chr15 46479758 46479877 -39215877 + L1ME LINE L1 4096 4236 -1979 380 43 0 0 chr15 46479891 46479938 -39215816 + (TA)n Simple_repeat Simple_repeat 2 48 0 346 203 75 60 chr15 46480365 46480498 -39215256 - L1MC4 LINE L1 -254 7788 7654 682 181 0 0 chr15 46480699 46480804 -39214950 - FLAM_C SINE Alu -37 106 2 384 127 0 246 chr15 46480811 46480921 -39214833 - AluJ/FLAM SINE Alu -219 83 1 589 179 34 0 chr15 46480931 46481068 -39214686 - MSTC LTR MaLR -215 150 1 1105 207 52 0 chr15 46481218 46481488 -39214266 + L1ME LINE L1 5042 5325 -890 772 235 143 115 chr15 46481488 46482130 -39213624 + LTR41 LTR ERVL 1 761 -12 315 214 68 0 chr15 46482142 46482245 -39213509 + L1M LINE L1 5255 5364 -806 * 695 180 120 37 chr15 46482242 46482459 -39213295 + L1ME LINE L1 5363 5597 -638 430 182 148 0 chr15 46482492 46482592 -39213162 + L1ME LINE L1 5568 5677 -558 915 127 65 31 chr15 46482600 46482652 -39213102 - L1MC/D LINE L1 -743 5403 5354 213 39 0 0 chr15 46482652 46482678 -39213076 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1747 140 26 4 chr15 46482679 46482951 -39212803 - AluJo SINE Alu -32 280 3 915 127 65 31 chr15 46482951 46483149 -39212605 - L1MC/D LINE L1 -791 5355 5181 1183 204 19 5 chr15 46483267 46483483 -39212271 - AluJo SINE Alu -92 220 2 24 0 0 0 chr15 46483568 46483592 -39212162 + AT_rich Low_complexity Low_complexity 1 24 0 858 172 0 0 chr15 46483592 46483714 -39212040 - FLAM_C SINE Alu -21 122 1 286 287 78 57 chr15 46484248 46484478 -39211276 - L2 LINE L2 -218 3054 2820 703 273 45 19 chr15 46484654 46484965 -39210789 - L2 LINE L2 -527 2787 2469 319 256 45 38 chr15 46484970 46485103 -39210651 - HAL1b LINE L1 -13 1335 1202 1756 136 208 25 chr15 46485510 46485870 -39209884 - MSTA LTR MaLR 0 428 3 2310 287 127 24 chr15 46485897 46486545 -39209209 - L2 LINE L2 -1834 1480 900 1486 204 126 50 chr15 46486545 46487000 -39208754 + MLT1F LTR MaLR 4 502 -40 1785 141 6 70 chr15 46487000 46487327 -39208427 - AluSx SINE Alu -6 306 1 1486 204 126 50 chr15 46487327 46487372 -39208382 + MLT1F LTR MaLR 502 542 0 2310 287 127 24 chr15 46487372 46487999 -39207755 - L2 LINE L2 -2414 900 73 1531 138 12 100 chr15 46488090 46488409 -39207345 - AluJo SINE Alu -21 291 1 2429 100 3 0 chr15 46488511 46488822 -39206932 - AluSx SINE Alu 0 312 1 2063 279 45 12 chr15 46488833 46489486 -39206268 - L1M4 LINE L1 -840 5306 4623 2094 143 3 0 chr15 46489486 46489793 -39205961 + AluJb SINE Alu 1 308 -4 2063 279 45 12 chr15 46489793 46489903 -39205851 - L1M4 LINE L1 -1523 4623 4518 348 256 331 23 chr15 46489930 46490051 -39205703 - L1M4 LINE L1 -1807 4339 4256 270 0 0 0 chr15 46490051 46490081 -39205673 + (TA)n Simple_repeat Simple_repeat 2 31 0 348 256 331 23 chr15 46490081 46490131 -39205623 - L1M4 LINE L1 -1890 4256 4115 684 150 57 71 chr15 46490212 46490352 -39205402 + AluSg/x SINE Alu 154 291 -19 259 287 0 20 chr15 46490366 46490467 -39205287 - L1M4 LINE L1 -3059 3087 2989 2063 127 149 26 chr15 46490893 46491334 -39204420 + LTR45B LTR ERV1 3 603 0 323 279 148 48 chr15 46491554 46491905 -39203849 - MLT1L LTR MaLR -31 584 199 214 49 24 49 chr15 46492085 46492126 -39203628 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2009 158 0 0 chr15 46492134 46492431 -39203323 - AluJb SINE Alu -15 297 1 1860 181 0 7 chr15 46492518 46492817 -39202937 - AluJb SINE Alu -15 297 1 696 216 119 10 chr15 46492832 46493026 -39202728 + MLT1J LTR MaLR 58 272 -239 197 321 37 9 chr15 46493101 46493210 -39202544 - L2 LINE L2 -37 3276 3165 268 361 8 0 chr15 46493277 46493399 -39202355 + (TCCA)n Simple_repeat Simple_repeat 2 124 0 1830 184 0 3 chr15 46493426 46493730 -39202024 - AluJb SINE Alu -9 303 1 937 256 44 19 chr15 46494910 46495230 -39200524 - L2 LINE L2 -51 3262 2935 183 238 0 0 chr15 46495917 46495959 -39199795 + MIR SINE MIR 115 156 -106 588 155 0 85 chr15 46496178 46496307 -39199447 - FLAM_C SINE Alu -2 141 24 417 233 0 0 chr15 46496316 46496406 -39199348 + MIR SINE MIR 69 158 -104 383 271 16 8 chr15 46496623 46496745 -39199009 - MIR SINE MIR -112 150 28 25 0 0 0 chr15 46496927 46496952 -39198802 + GC_rich Low_complexity Low_complexity 1 25 0 245 225 42 0 chr15 46497303 46497374 -39198380 - L1ME4a LINE L1 -81 6040 5967 3164 158 70 5 chr15 46497438 46498054 -39197700 - L1MC2 LINE L1 -8 6336 5681 594 245 94 0 chr15 46498330 46498489 -39197265 + MIR SINE MIR 47 220 -42 1251 160 176 16 chr15 46498540 46498796 -39196958 - AluJb SINE Alu -4 298 2 1987 126 0 17 chr15 46498800 46499115 -39196639 - AluSc SINE Alu 0 309 1 1559 143 0 8 chr15 46499117 46499361 -39196393 - AluSg/x SINE Alu -3 309 68 289 81 0 0 chr15 46499461 46499498 -39196256 - Alu SINE Alu -266 37 1 1191 206 0 5 chr15 46499498 46499717 -39196037 - AluJo SINE Alu -13 299 82 247 135 0 0 chr15 46499717 46499754 -39196000 - Alu SINE Alu -181 121 85 589 214 51 0 chr15 46499754 46499871 -39195883 - AluJo/FLAM SINE Alu -188 124 2 1611 174 24 15 chr15 46499908 46499938 -39195816 - L1MB3 LINE L1 -9 6174 6146 2113 101 0 0 chr15 46499938 46500205 -39195549 - AluSg SINE Alu -12 298 32 1611 174 24 15 chr15 46500205 46500507 -39195247 - L1MB3 LINE L1 -37 6146 5839 427 206 103 73 chr15 46500512 46500677 -39195077 + L2 LINE L2 3138 3307 -6 493 296 25 6 chr15 46500883 46501045 -39194709 + MLT1K LTR MaLR 13 177 -411 825 251 36 40 chr15 46501078 46501301 -39194453 + MLT1K LTR MaLR 300 521 -67 381 317 67 22 chr15 46501385 46501609 -39194145 + L3 LINE CR1 1100 1333 -244 2405 140 57 7 chr15 46501986 46502392 -39193362 - MSTB LTR MaLR 0 426 1 29 28 0 0 chr15 46502868 46502904 -39192850 + AT_rich Low_complexity Low_complexity 1 36 0 227 269 57 99 chr15 46502991 46503055 -39192699 + MIR SINE MIR 102 167 -95 2081 108 0 35 chr15 46503055 46503342 -39192412 - AluSx SINE Alu -35 277 1 227 269 57 99 chr15 46503342 46503418 -39192336 + MIR SINE MIR 167 236 -26 2419 86 0 0 chr15 46503561 46503864 -39191890 - AluSg SINE Alu -6 304 2 702 288 97 34 chr15 46503961 46504367 -39191387 + MLT1J LTR MaLR 34 509 -2 1975 142 7 0 chr15 46504561 46504842 -39190912 - AluSx SINE Alu -7 305 23 219 268 37 12 chr15 46505774 46505856 -39189898 - MIR SINE MIR -55 153 70 183 356 26 9 chr15 46505900 46506015 -39189739 - MIR SINE MIR -55 153 37 327 136 21 101 chr15 46506129 46506235 -39189519 - MLT1E LTR MaLR -195 459 315 1815 156 3 27 chr15 46506322 46506623 -39189131 - AluJb SINE Alu -14 298 5 250 266 31 0 chr15 46506730 46506794 -39188960 - MLT1F LTR MaLR -467 75 10 2405 58 7 0 chr15 46506838 46507129 -39188625 + AluY SINE Alu 1 293 -18 360 0 0 0 chr15 46507738 46507778 -39187976 + (TC)n Simple_repeat Simple_repeat 1 40 0 1840 152 17 17 chr15 46508489 46508786 -39186968 - AluJo SINE Alu -15 297 1 333 237 0 0 chr15 46508912 46508988 -39186766 - MER116 DNA Mariner -2 78 3 2242 158 7 44 chr15 46509027 46509340 -39186414 - MSTD LTR MaLR 0 396 100 1588 173 23 27 chr15 46509340 46509640 -39186114 - AluJo SINE Alu -13 299 1 2242 158 7 44 chr15 46509640 46509737 -39186017 - MSTD LTR MaLR -296 100 1 924 251 89 30 chr15 46509841 46510236 -39185518 + LTR16A LTR ERVL 27 444 -6 294 317 112 6 chr15 46510253 46510414 -39185340 + HERV16 LTR ERVL 12 189 -4807 1522 203 152 16 chr15 46510502 46510931 -39184823 + MER39 LTR ERV1 221 707 0 676 298 5 23 chr15 46511151 46511369 -39184385 + HERV16 LTR ERVL 435 648 -4348 2160 127 159 5 chr15 46511403 46511774 -39183980 - MSTA LTR MaLR 0 428 1 1385 294 57 21 chr15 46511886 46512219 -39183535 + HERV16 LTR ERVL 813 1133 -3980 1781 140 72 17 chr15 46512219 46512512 -39183242 + AluSx SINE Alu 3 311 -1 1385 294 57 21 chr15 46512512 46512928 -39182826 + HERV16 LTR ERVL 1133 1692 -3421 1857 304 33 19 chr15 46512982 46514059 -39181695 + HERV16 LTR ERVL 1757 2891 -2105 385 139 127 89 chr15 46514102 46514181 -39181573 + LTR30 LTR ERV1 207 620 -89 449 293 36 12 chr15 46514314 46514514 -39181240 - MIR SINE MIR -32 176 4 829 268 121 23 chr15 46514516 46514904 -39180850 - LTR16A LTR ERVL 0 450 25 402 273 74 0 chr15 46515246 46515367 -39180387 - L2 LINE L2 -1 3312 3183 2177 103 13 22 chr15 46515996 46516308 -39179446 - AluSx SINE Alu -3 309 1 7476 42 0 7 chr15 46516416 46517446 -39178308 - L1PA5 LINE L1 -6 6148 5120 5824 68 16 0 chr15 46517597 46518351 -39177403 + MER4E LTR ERV1 1 766 0 298 179 0 18 chr15 46518723 46518779 -39176975 + LTR67 LTR ERVL 503 557 0 26 50 0 0 chr15 46519119 46519159 -39176595 + AT_rich Low_complexity Low_complexity 1 40 0 2574 65 0 3 chr15 46519620 46519929 -39175825 + AluY SINE Alu 2 309 -2 1676 208 16 19 chr15 46520073 46520439 -39175315 + MLT1A1 LTR MaLR 1 365 0 227 234 0 0 chr15 46520449 46520496 -39175258 - MIR SINE MIR -88 120 74 180 274 32 16 chr15 46520745 46520807 -39174947 + MIR SINE MIR 16 78 -184 192 259 0 0 chr15 46521913 46521967 -39173787 + MIR SINE MIR 81 134 -128 1251 188 0 117 chr15 46521985 46522310 -39173444 + AluSx SINE Alu 1 287 -25 211 221 73 29 chr15 46522446 46522514 -39173240 - MIR SINE MIR -108 154 84 274 331 69 0 chr15 46522811 46522941 -39172813 - L2 LINE L2 0 3272 3134 219 114 0 0 chr15 46524519 46524554 -39171200 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5378 165 56 54 chr15 46524588 46525210 -39170544 + Charlie1 DNA MER1_type 19 638 -2123 3060 100 15 0 chr15 46525210 46525619 -39170135 - L1PA13 LINE L1 -1 6162 5748 5378 165 56 54 chr15 46525619 46525894 -39169860 + Charlie1 DNA MER1_type 638 911 -1850 1929 148 0 0 chr15 46525894 46526216 -39169538 - AluSx SINE Alu 0 322 1 5378 165 56 54 chr15 46526216 46526674 -39169080 + Charlie1 DNA MER1_type 911 1366 -1395 2432 88 0 0 chr15 46526674 46526969 -39168785 + AluSc SINE Alu 1 295 -14 5378 165 56 54 chr15 46526969 46527039 -39168715 + Charlie1 DNA MER1_type 1366 2759 -2 438 323 73 11 chr15 46527147 46527382 -39168372 - L1ME LINE L1 -349 5772 5518 1679 167 3 33 chr15 46527382 46527687 -39168067 + AluJo SINE Alu 1 296 -16 438 323 73 11 chr15 46527687 46527711 -39168043 - L1ME LINE L1 -603 5518 5497 1179 129 33 58 chr15 46527998 46528029 -39167725 + L1MB2 LINE L1 5893 5923 -248 1261 180 120 15 chr15 46528029 46528296 -39167458 - AluJo SINE Alu -17 295 1 1179 129 33 58 chr15 46528296 46528393 -39167361 + L1MB2 LINE L1 5923 6021 -150 2660 98 28 17 chr15 46528393 46528751 -39167003 + THE1B LTR MaLR 1 362 -2 1179 129 33 58 chr15 46528751 46528861 -39166893 + L1MB2 LINE L1 6021 6126 -45 * 6307 163 12 33 chr15 46528858 46530323 -39165431 + L1MC1 LINE L1 4896 6327 -6 255 78 98 0 chr15 46530331 46530363 -39165391 + L1MB2 LINE L1 6116 6143 -28 279 0 0 0 chr15 46530363 46530394 -39165360 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 255 78 98 0 chr15 46530394 46530412 -39165342 + L1MB2 LINE L1 6143 6171 0 1841 122 48 17 chr15 46530419 46530714 -39165040 + AluJb SINE Alu 3 306 -6 21 0 0 0 chr15 46530717 46530738 -39165016 + AT_rich Low_complexity Low_complexity 1 21 0 831 207 76 61 chr15 46530802 46530967 -39164787 - L1MC4a LINE L1 -357 5827 5822 795 213 61 10 chr15 46530967 46531036 -39164718 - MER3 DNA MER1_type -2 207 143 2100 124 0 0 chr15 46531036 46531327 -39164427 + AluSx SINE Alu 1 291 -21 795 213 61 10 chr15 46531327 46531454 -39164300 - MER3 DNA MER1_type -66 143 1 831 207 76 61 chr15 46531454 46531604 -39164150 - L1MC4a LINE L1 -362 5822 5676 291 228 0 0 chr15 46532222 46532279 -39163475 + MLT1F1 LTR MaLR 1 57 -510 1226 120 0 12 chr15 46532279 46532446 -39163308 + FRAM SINE Alu 1 159 -17 1281 208 12 16 chr15 46532446 46532701 -39163053 + MLT1F1 LTR MaLR 54 307 -260 987 215 74 20 chr15 46532718 46533020 -39162734 - MSTD LTR MaLR 0 396 42 1041 205 62 9 chr15 46533041 46533265 -39162489 + MLT1F1 LTR MaLR 307 542 0 854 245 77 32 chr15 46533484 46533938 -39161816 + LTR33 LTR ERVL 6 517 -4 2076 118 3 3 chr15 46534234 46534521 -39161233 + AluSx SINE Alu 1 287 -25 208 227 299 0 chr15 46534853 46534950 -39160804 + MIR SINE MIR 116 241 -21 25 0 0 0 chr15 46535387 46535412 -39160342 + AT_rich Low_complexity Low_complexity 1 25 0 2271 114 0 0 chr15 46536318 46536625 -39159129 - AluSg SINE Alu -3 307 1 764 314 74 21 chr15 46537162 46537904 -39157850 + L1MC4a LINE L1 5122 5403 -743 355 319 42 24 chr15 46538153 46538319 -39157435 - MIR SINE MIR -2 260 92 558 0 0 0 chr15 46539161 46539223 -39156531 + (TG)n Simple_repeat Simple_repeat 2 63 0 453 212 39 127 chr15 46539517 46539705 -39156049 + MER112 DNA MER1_type 17 178 -82 1901 142 0 28 chr15 46539705 46540036 -39155718 + AluJb SINE Alu 1 323 0 453 212 39 127 chr15 46540036 46540105 -39155649 + MER112 DNA MER1_type 178 252 -8 1799 166 7 7 chr15 46540328 46540807 -39154947 - AluJo SINE Alu 0 479 1 651 251 111 14 chr15 46540816 46541023 -39154731 - MIR SINE MIR -16 246 20 233 143 0 0 chr15 46541508 46541550 -39154204 - L1MB4 LINE L1 0 6180 6139 * 999 233 60 12 chr15 46541530 46541779 -39153975 - L1MB8 LINE L1 -53 6125 5865 997 161 0 19 chr15 46541779 46541940 -39153814 - AluSg/x SINE Alu -18 294 137 4110 167 34 80 chr15 46541941 46542168 -39153586 - L1MB8 LINE L1 -295 5879 5643 1987 142 3 0 chr15 46542168 46542463 -39153291 - AluJb SINE Alu -7 305 10 4110 167 34 80 chr15 46542463 46542992 -39152762 - L1MB8 LINE L1 -531 5643 5091 2150 128 3 3 chr15 46542992 46543323 -39152431 - AluSx SINE Alu 0 312 1 4110 167 34 80 chr15 46543323 46544076 -39151678 - L1MB8 LINE L1 -1083 5091 4305 1754 166 0 3 chr15 46544076 46544360 -39151394 - AluJb SINE Alu -28 284 2 4110 167 34 80 chr15 46544360 46544384 -39151370 - L1MB8 LINE L1 -1869 4305 4281 390 97 0 16 chr15 46544384 46544446 -39151308 - L1MC2 LINE L1 -8 6336 6276 4110 167 34 80 chr15 46544446 46544627 -39151127 - L1MB8 LINE L1 -1893 4281 4256 201 218 138 46 chr15 46544656 46544743 -39151011 - MIR SINE MIR -55 153 59 279 261 34 50 chr15 46545836 46545955 -39149799 - MIR3 SINE MIR -49 159 43 330 130 0 19 chr15 46546069 46546123 -39149631 - MIR SINE MIR -56 152 100 729 169 7 32 chr15 46546524 46546678 -39149076 - L1ME4a LINE L1 -8 6113 5964 34 65 0 0 chr15 46546707 46546769 -39148985 + AT_rich Low_complexity Low_complexity 1 62 0 24 32 0 0 chr15 46546934 46546965 -39148789 + AT_rich Low_complexity Low_complexity 1 31 0 524 305 67 13 chr15 46547029 46547268 -39148486 - L1ME4a LINE L1 -1993 5815 5564 709 284 138 50 chr15 46547458 46548485 -39147269 - L1ME4a LINE L1 -865 5281 4164 1540 153 89 31 chr15 46548648 46548975 -39146779 + MLT1C LTR MaLR 122 467 0 678 146 0 0 chr15 46549246 46549342 -39146412 - FLAM_A SINE Alu -21 121 26 231 61 0 0 chr15 46549487 46549520 -39146234 + (CA)n Simple_repeat Simple_repeat 2 34 0 2714 136 26 12 chr15 46549923 46550343 -39145411 + MSTB LTR MaLR 1 426 0 1961 135 57 3 chr15 46550967 46551301 -39144453 - L1MB3 LINE L1 -42 6141 5790 2459 55 3 0 chr15 46551332 46551624 -39144130 + AluY SINE Alu 1 293 -18 252 0 0 0 chr15 46552233 46552261 -39143493 + (TC)n Simple_repeat Simple_repeat 1 28 0 1838 168 3 3 chr15 46552972 46553269 -39142485 - AluJo SINE Alu -15 297 1 325 232 0 0 chr15 46553395 46553464 -39142290 - MER116 DNA Mariner -2 78 10 797 162 56 73 chr15 46553585 46553764 -39141990 - MLT1B LTR MaLR -209 181 6 231 196 29 29 chr15 46553833 46553935 -39141819 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 1386 226 76 44 chr15 46553937 46554382 -39141372 - L1MB3 LINE L1 -366 5796 5367 1831 173 0 3 chr15 46554382 46554671 -39141083 - AluJb SINE Alu -24 288 1 1386 226 76 44 chr15 46554671 46554799 -39140955 - L1MB3 LINE L1 -795 5367 5245 3143 150 102 31 chr15 46554799 46554900 -39140854 - LTR26E LTR ERV1 0 622 530 1438 174 96 4 chr15 46554900 46555170 -39140584 + AluSx SINE Alu 1 295 -17 3143 150 102 31 chr15 46555170 46555649 -39140105 - LTR26E LTR ERV1 -92 530 1 1386 226 76 44 chr15 46555649 46555689 -39140065 - L1MB3 LINE L1 -917 5245 5208 3853 123 31 57 chr15 46555689 46555895 -39139859 - MER41B LTR ERV1 0 635 425 2280 100 0 3 chr15 46555895 46556195 -39139559 - AluSq SINE Alu -14 299 1 3853 123 31 57 chr15 46556195 46556640 -39139114 - MER41B LTR ERV1 -210 425 1 1386 226 76 44 chr15 46556640 46556929 -39138825 - L1MB3 LINE L1 -954 5208 4906 2180 143 22 54 chr15 46556947 46556976 -39138778 - MER57A LTR ERV1 -10 393 365 1762 176 7 3 chr15 46556976 46557277 -39138477 - AluJb SINE Alu -10 302 1 2180 143 22 54 chr15 46557277 46557653 -39138101 - MER57A LTR ERV1 -38 365 1 2496 199 147 72 chr15 46557685 46558034 -39137720 + MER21B LTR ERV1 11 332 -531 4035 141 42 39 chr15 46558034 46558723 -39137031 + LTR8 LTR ERV1 1 691 0 2496 199 147 72 chr15 46558723 46559121 -39136633 + MER21B LTR ERV1 332 814 -49 1721 171 10 23 chr15 46559272 46559571 -39136183 - AluJb SINE Alu -17 295 1 2411 125 25 105 chr15 46559632 46559829 -39135925 - LTR19A LTR ERV1 -14 472 261 1803 171 0 3 chr15 46559829 46560128 -39135626 - AluSg SINE Alu -10 300 3 2411 125 25 105 chr15 46560128 46560443 -39135311 - LTR19A LTR ERV1 -225 261 1 324 358 75 0 chr15 46560607 46560780 -39134974 - L1MEd LINE L1 -4584 2023 1838 1158 126 0 2 chr15 46560780 46561124 -39134630 + (TC)n Simple_repeat Simple_repeat 1 523 0 786 169 0 8 chr15 46561129 46561247 -39134507 - FLAM_C SINE Alu -25 118 2 331 120 0 0 chr15 46561356 46561406 -39134348 - FAM SINE Alu -2 177 128 675 254 143 33 chr15 46561540 46562021 -39133733 - L1MEd LINE L1 -4863 1553 1002 1763 213 94 34 chr15 46562056 46562469 -39133285 + MER41B-int LTR ERV1 2239 2676 -1515 1159 282 23 6 chr15 46562506 46562853 -39132901 - MER74B LTR ERVL -49 573 221 6734 201 21 48 chr15 46562948 46563782 -39131972 + MER41B-int LTR ERV1 2673 3449 -742 888 144 0 0 chr15 46563782 46563900 -39131854 - FLAM_C SINE Alu -15 118 1 6734 201 21 48 chr15 46563900 46564564 -39131190 + MER41B-int LTR ERV1 3449 4130 -61 4572 115 11 0 chr15 46564780 46565408 -39130346 + MER41B LTR ERV1 1 635 0 1763 232 82 88 chr15 46565507 46566215 -39129539 + MER21B LTR ERV1 6 709 -154 2386 115 5 69 chr15 46566217 46566309 -39129445 - MER47A DNA MER2_type -1957 366 270 911 193 81 0 chr15 46566309 46566470 -39129284 + FAM SINE Alu 1 174 -1 2386 115 5 69 chr15 46566470 46566768 -39128986 - MER47A DNA MER2_type -2053 270 1 1802 157 17 38 chr15 46567112 46567171 -39128583 - L1MB4 LINE L1 0 6180 6121 1487 159 118 37 chr15 46567171 46567441 -39128313 + AluJo SINE Alu 1 292 -10 1802 157 17 38 chr15 46567441 46567726 -39128028 - L1MB4 LINE L1 -59 6121 5843 1797 195 3 3 chr15 46568595 46568902 -39126852 + AluJb SINE Alu 1 307 -5 2859 140 96 68 chr15 46569022 46569072 -39126682 + L1MB3 LINE L1 5560 5607 -576 901 198 6 6 chr15 46569072 46569234 -39126520 + FRAM SINE Alu 2 163 -3 2859 140 96 68 chr15 46569234 46569529 -39126225 + L1MB3 LINE L1 5607 5892 -291 375 23 0 0 chr15 46569529 46569573 -39126181 + (CA)n Simple_repeat Simple_repeat 2 45 0 2859 140 96 68 chr15 46569573 46569789 -39125965 + L1MB3 LINE L1 5892 6143 -40 1869 187 0 0 chr15 46569789 46570078 -39125676 + AluJb SINE Alu 1 289 -23 2859 140 96 68 chr15 46570078 46570121 -39125633 + L1MB3 LINE L1 6143 6183 0 280 254 43 36 chr15 46570262 46570400 -39125354 - HAL1b LINE L1 -569 779 641 613 207 39 34 chr15 46570493 46570672 -39125082 + LTR33 LTR ERVL 342 521 0 247 287 46 0 chr15 46570704 46570791 -39124963 + CT-rich Low_complexity Low_complexity 3 93 0 765 222 0 0 chr15 46572133 46572250 -39123504 - FLAM_C SINE Alu -16 117 1 432 252 7 86 chr15 46572464 46572615 -39123139 + MIR3 SINE MIR 7 145 -63 731 229 51 32 chr15 46572615 46572868 -39122886 - MIR SINE MIR 0 262 5 2449 98 21 64 chr15 46573287 46573740 -39122014 - LTR23 LTR ERV1 0 467 1 719 196 44 13 chr15 46573740 46573891 -39121863 - MER58A DNA MER1_type -22 202 47 3562 212 100 62 chr15 46573926 46574994 -39120760 - LTR28 LTR ERV1 -5 1750 4 1061 268 109 34 chr15 46575027 46575091 -39120663 - HAL1 LINE L1 -181 2326 2268 1797 146 0 88 chr15 46575091 46575433 -39120321 - AluJb SINE Alu 0 312 1 1061 268 109 34 chr15 46575433 46575936 -39119818 - HAL1 LINE L1 -239 2268 1716 2285 101 10 3 chr15 46575952 46576249 -39119505 - AluSx SINE Alu -13 299 1 682 200 140 10 chr15 46576254 46576454 -39119300 - HAL1 LINE L1 -887 1620 1395 1626 97 9 0 chr15 46576454 46576681 -39119073 + MER41B LTR ERV1 1 229 -406 395 254 49 90 chr15 46576685 46576929 -39118825 - HAL1 LINE L1 -2173 334 101 249 224 47 93 chr15 46576938 46577045 -39118709 + L2 LINE L2 2613 2714 -600 1652 114 144 0 chr15 46577176 46577439 -39118315 + AluY SINE Alu 1 301 0 239 231 205 13 chr15 46577490 46577646 -39118108 + L1MC5 LINE L1 7581 7766 -195 465 34 0 0 chr15 46577765 46577824 -39117930 + (CA)n Simple_repeat Simple_repeat 2 60 0 2541 138 26 12 chr15 46578227 46578647 -39117107 + MSTB LTR MaLR 1 426 0 1948 135 57 3 chr15 46579271 46579605 -39116149 - L1MB3 LINE L1 -42 6141 5790 4625 129 26 60 chr15 46579614 46579636 -39116118 - L1MB7 LINE L1 0 6184 6163 2435 79 0 0 chr15 46579636 46579928 -39115826 + AluSg SINE Alu 1 292 -18 4625 129 26 60 chr15 46579928 46579987 -39115767 - L1MB7 LINE L1 -21 6163 6104 1942 149 17 7 chr15 46579987 46580282 -39115472 + AluJb SINE Alu 1 298 -14 4625 129 26 60 chr15 46580282 46580499 -39115255 - L1MB7 LINE L1 -80 6104 5881 675 233 74 6 chr15 46580499 46580662 -39115092 + FAM SINE Alu 1 174 -1 4625 129 26 60 chr15 46580662 46581212 -39114542 - L1MB7 LINE L1 -303 5881 5363 2880 147 6 33 chr15 46581264 46581630 -39114124 - LTR54 LTR ERV1 0 510 160 2259 164 54 20 chr15 46581630 46582076 -39113678 - LOR1b LTR ERV1 0 461 1 2880 147 6 33 chr15 46582076 46582218 -39113536 - LTR54 LTR ERV1 -350 160 16 1733 176 7 17 chr15 46582412 46582708 -39113046 + AluJo SINE Alu 1 293 -19 911 252 100 84 chr15 46582712 46583644 -39112110 - HAL1 LINE L1 -738 1769 823 486 215 94 42 chr15 46584066 46584257 -39111497 + L1MC4 LINE L1 7654 7854 -188 186 43 0 0 chr15 46584267 46584290 -39111464 + (CA)n Simple_repeat Simple_repeat 2 24 0 566 296 27 15 chr15 46584292 46584552 -39111202 - L1ME4a LINE L1 -268 5853 5591 1976 164 3 0 chr15 46584552 46584857 -39110897 + AluJb SINE Alu 1 306 -6 224 195 65 0 chr15 46585357 46585434 -39110320 + (TA)n Simple_repeat Simple_repeat 1 82 0 489 282 39 67 chr15 46585693 46586023 -39109731 + L2 LINE L2 2952 3272 0 441 229 45 62 chr15 46586193 46586372 -39109382 + MIR3 SINE MIR 17 192 -16 23 33 0 0 chr15 46586833 46586863 -39108891 + AT_rich Low_complexity Low_complexity 1 30 0 2247 130 112 20 chr15 46587044 46587196 -39108558 + MSTA LTR MaLR 1 138 -290 1882 139 58 0 chr15 46587196 46587491 -39108263 - AluSx SINE Alu 0 312 1 2247 130 112 20 chr15 46587491 46587730 -39108024 + MSTA LTR MaLR 138 428 0 2423 79 0 31 chr15 46587892 46588210 -39107544 + AluY SINE Alu 1 308 -3 273 244 105 23 chr15 46588423 46588509 -39107245 - MIR SINE MIR -100 162 70 258 341 80 0 chr15 46588543 46588681 -39107073 - MIR SINE MIR -65 197 49 1727 172 0 17 chr15 46589002 46589293 -39106461 + AluJo SINE Alu 1 286 -26 2571 101 25 5 chr15 46589498 46589866 -39105888 - THE1C LTR MaLR 0 375 1 2625 54 0 6 chr15 46589965 46590278 -39105476 + AluY SINE Alu 1 311 0 458 293 57 0 chr15 46590556 46590679 -39105075 + L2 LINE L2 3139 3268 -4 23 0 0 0 chr15 46591247 46591270 -39104484 + AT_rich Low_complexity Low_complexity 1 23 0 929 188 34 10 chr15 46591772 46591980 -39103774 + L1 LINE L1 3337 3549 -2597 2275 105 0 0 chr15 46592284 46592579 -39103175 - AluSq SINE Alu -18 295 1 223 191 29 44 chr15 46592654 46592722 -39103032 + MIR3 SINE MIR 97 163 -45 2471 188 8 28 chr15 46592736 46593241 -39102513 + MER106B DNA MER1_type 30 524 -535 342 0 0 0 chr15 46593245 46593283 -39102471 + (CA)n Simple_repeat Simple_repeat 1 38 0 324 0 0 0 chr15 46593282 46593318 -39102436 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 479 195 115 0 chr15 46593319 46593432 -39102322 + MER106B DNA MER1_type 934 1059 0 288 287 11 0 chr15 46593523 46593610 -39102144 + MIR SINE MIR 60 147 -115 1120 293 84 41 chr15 46593678 46594142 -39101612 - LTR16C LTR ERVL -7 484 1 340 281 0 9 chr15 46594185 46594299 -39101455 + (TCCA)n Simple_repeat Simple_repeat 3 115 0 883 259 62 39 chr15 46595263 46595599 -39100155 + LTR33 LTR ERVL 29 372 -149 569 111 197 60 chr15 46595968 46596085 -39099669 + FLAM_C SINE Alu 1 133 0 245 277 60 0 chr15 46596115 46596198 -39099556 + L2 LINE L2 3185 3272 0 579 95 0 0 chr15 46596233 46596317 -39099437 - L1PB3 LINE L1 -1 6153 6070 398 231 52 52 chr15 46596723 46596857 -39098897 + MER117 DNA MER1_type 11 144 -53 2286 119 0 0 chr15 46597040 46597335 -39098419 - AluSx SINE Alu -17 295 1 275 306 0 0 chr15 46597698 46597770 -39097984 - Charlie8 DNA MER1_type -1 2416 2345 2469 63 0 13 chr15 46597863 46598178 -39097576 + AluY SINE Alu 1 311 0 332 43 43 0 chr15 46598287 46598333 -39097421 + MADE1 DNA Mariner 33 80 0 2161 121 0 0 chr15 46598351 46598657 -39097097 + AluSx SINE Alu 1 306 0 2431 97 0 6 chr15 46600493 46600804 -39094950 - AluSc SINE Alu 0 309 1 1808 178 3 10 chr15 46601638 46601941 -39093813 - AluJo SINE Alu -11 301 1 212 380 0 0 chr15 46601941 46602020 -39093734 + L2 LINE L2 3099 3177 -95 954 201 93 15 chr15 46603032 46603236 -39092518 - AluJo SINE Alu -92 220 1 494 306 6 13 chr15 46603591 46603748 -39092006 + MIR SINE MIR 37 192 -70 2046 152 0 0 chr15 46604027 46604324 -39091430 + AluSx SINE Alu 4 300 -12 358 261 176 7 chr15 46604327 46604469 -39091285 + Charlie8 DNA MER1_type 82 247 -2170 244 188 31 47 chr15 46604623 46604687 -39091067 - L2 LINE L2 -5 3308 3246 259 268 232 30 chr15 46604695 46604859 -39090895 - MIR SINE MIR -10 252 56 807 274 77 32 chr15 46605526 46605752 -39090002 + L1ME3A LINE L1 5594 5841 -329 1353 148 28 18 chr15 46605752 46605969 -39089785 + MER20 DNA MER1_type 1 219 0 807 274 77 32 chr15 46605969 46606081 -39089673 + L1ME3A LINE L1 5841 5947 -223 2842 137 53 8 chr15 46606127 46606639 -39089115 + Charlie1 DNA MER1_type 2227 2761 0 21 71 0 0 chr15 46606930 46606972 -39088782 + AT_rich Low_complexity Low_complexity 1 42 0 399 313 47 47 chr15 46606980 46607053 -39088701 - MIR SINE MIR -38 224 152 1741 179 0 17 chr15 46607053 46607349 -39088405 - AluJo SINE Alu -20 292 2 399 313 47 47 chr15 46607349 46607489 -39088265 - MIR SINE MIR -109 153 11 371 279 183 19 chr15 46608074 46608277 -39087477 - LTR16A LTR ERVL -6 444 208 1057 139 6 0 chr15 46608277 46608443 -39087311 + MSTA LTR MaLR 1 167 -261 1830 90 50 131 chr15 46608472 46608815 -39086939 - AluYb8 SINE Alu -3 315 1 1684 180 4 4 chr15 46608816 46609094 -39086660 + MSTA LTR MaLR 151 428 0 8829 157 10 13 chr15 46609096 46610418 -39085336 + MSTA-int LTR MaLR 3 1419 -232 8749 57 10 0 chr15 46610418 46611478 -39084276 + MER11C LTR ERVK 1 1071 0 8829 157 10 13 chr15 46611478 46611710 -39084044 + MSTA-int LTR MaLR 1419 1650 -1 2182 191 21 12 chr15 46611711 46612135 -39083619 + MSTA LTR MaLR 1 428 0 273 65 32 32 chr15 46612308 46612370 -39083384 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1367 109 0 0 chr15 46613150 46613333 -39082421 - AluSp SINE Alu -2 311 129 363 349 181 7 chr15 46613500 46613781 -39081973 - L2 LINE L2 -2 3270 2941 564 230 115 6 chr15 46613950 46614115 -39081639 - L1ME3A LINE L1 -4 6166 5984 2207 109 3 3 chr15 46614410 46614712 -39081042 + AluSx SINE Alu 1 302 -10 1928 162 64 3 chr15 46614732 46615059 -39080695 - MER7A DNA MER2_type 0 346 2 2308 107 0 0 chr15 46615553 46615852 -39079902 - AluSx SINE Alu -13 299 1 312 260 16 24 chr15 46616383 46616510 -39079244 - L2 LINE L2 -223 3049 2924 231 337 91 5 chr15 46617483 46617670 -39078084 - L2 LINE L2 -591 2723 2521 448 200 8 64 chr15 46617736 46617861 -39077893 + MER5B DNA MER1_type 1 118 -60 1075 177 0 21 chr15 46617887 46618073 -39077681 - AluJb SINE Alu -44 268 87 667 201 81 0 chr15 46618555 46618704 -39077050 - MER63 DNA MER1_type 0 1060 900 691 176 0 29 chr15 46619537 46619673 -39076081 - FLAM_C SINE Alu 0 143 12 2271 106 99 42 chr15 46619789 46619842 -39075912 + MSTA LTR MaLR 2 51 -377 2069 124 17 0 chr15 46619842 46620133 -39075621 + AluSx SINE Alu 1 296 -16 2271 106 99 42 chr15 46620133 46620483 -39075271 + MSTA LTR MaLR 51 428 0 1339 232 3 26 chr15 46620505 46620815 -39074939 - AluJo SINE Alu -7 305 3 319 219 31 21 chr15 46620820 46620883 -39074871 - FLAM_C SINE Alu 0 133 70 3102 166 20 6 chr15 46620883 46621430 -39074324 - LTR35 LTR ERV1 0 618 64 923 134 0 0 chr15 46621456 46621590 -39074164 + AluJb SINE Alu 177 310 -2 2231 102 3 10 chr15 46621602 46621906 -39073848 + AluSg SINE Alu 1 302 -8 405 182 8 0 chr15 46621995 46622082 -39073672 - AluJ/FLAM SINE Alu -234 68 1 1656 176 16 38 chr15 46622397 46622710 -39073044 + AluJo SINE Alu 1 306 -6 362 141 10 50 chr15 46622723 46622822 -39072932 + GA-rich Low_complexity Low_complexity 1 95 0 392 283 27 135 chr15 46622877 46623284 -39072470 - L2 LINE L2 -1 3271 2909 205 246 18 18 chr15 46623431 46623488 -39072266 - MIR SINE MIR -89 173 117 284 146 175 57 chr15 46623706 46623805 -39071949 + MIR SINE MIR 14 124 -84 654 24 12 0 chr15 46624903 46624985 -39070769 + AluY SINE Alu 2 84 -226 2401 104 3 0 chr15 46625316 46625625 -39070129 - AluSp SINE Alu -3 310 1 338 257 29 3 chr15 46626323 46626461 -39069293 - LTR16A LTR ERVL -30 420 233 2528 69 0 3 chr15 46626490 46626794 -39068960 - AluY SINE Alu -8 303 1 2708 172 38 121 chr15 46626794 46627561 -39068193 - LTR8A LTR ERV1 -5 722 20 274 264 62 39 chr15 46627634 46627763 -39067991 - LTR16A1 LTR ERVL -325 132 1 2102 117 35 3 chr15 46627911 46628201 -39067553 + AluSx SINE Alu 1 299 -13 252 242 65 0 chr15 46628733 46628795 -39066959 - L2 LINE L2 -2 3270 3205 1816 153 4 7 chr15 46628842 46629123 -39066631 + AluJb SINE Alu 1 280 -32 2129 126 3 0 chr15 46629429 46629723 -39066031 - AluSx SINE Alu -17 295 1 2445 110 33 33 chr15 46630015 46630379 -39065375 - THE1B LTR MaLR 0 364 1 188 286 0 0 chr15 46630736 46630778 -39064976 - MIR SINE MIR -21 241 200 784 255 98 57 chr15 46630796 46631053 -39064701 - L2 LINE L2 0 3313 3068 1416 239 126 95 chr15 46631053 46631854 -39063900 - LTR1B LTR ERV1 0 826 1 784 255 98 57 chr15 46631854 46632101 -39063653 - L2 LINE L2 -245 3068 2737 1643 184 14 3 chr15 46632137 46632420 -39063334 - MER58B DNA MER1_type 0 341 56 461 243 76 21 chr15 46632457 46632601 -39063153 - L2 LINE L2 -583 2731 2580 359 325 53 30 chr15 46632621 46632790 -39062964 - MIR SINE MIR -70 192 20 2256 121 0 6 chr15 46632795 46633109 -39062645 - AluSx SINE Alu 0 312 1 1537 206 17 17 chr15 46633330 46633622 -39062132 - AluJb SINE Alu -18 294 3 2572 212 131 3 chr15 46633827 46634779 -39060975 + L1M4 LINE L1 1 1495 -5714 12674 206 31 39 chr15 46634784 46636022 -39059732 + L1M4 LINE L1 2317 3564 -3644 3110 90 34 32 chr15 46636022 46636465 -39059289 - MLT2A1 LTR ERVL 0 444 1 12674 206 31 39 chr15 46636465 46637250 -39058504 + L1M4 LINE L1 3564 4354 -2854 2089 121 0 3 chr15 46637250 46637561 -39058193 + AluSg SINE Alu 1 310 0 12674 206 31 39 chr15 46637561 46639077 -39056677 + L1M4 LINE L1 4354 5779 -1429 1040 189 60 17 chr15 46639178 46639585 -39056169 + AluJo SINE Alu 41 457 0 949 126 17 6 chr15 46639411 46639721 -39056033 + GA-rich Low_complexity Low_complexity 2 313 0 827 299 83 29 chr15 46640022 46640407 -39055347 + MLT1I LTR MaLR 1 406 -3 757 259 21 62 chr15 46640987 46641230 -39054524 + MLT1I LTR MaLR 44 276 -133 302 333 93 14 chr15 46641347 46641563 -39054191 + L1M4 LINE L1 6168 6400 -808 2784 141 37 35 chr15 46641769 46641824 -39053930 - MER31A LTR ERV1 0 485 432 2132 139 0 0 chr15 46641824 46642126 -39053628 - AluSx SINE Alu -10 302 1 2784 141 37 35 chr15 46642126 46642554 -39053200 - MER31A LTR ERV1 -53 432 1 1053 211 253 14 chr15 46642827 46643298 -39052456 + LTR50 LTR ERVL 25 382 -413 2615 181 26 30 chr15 46643298 46643805 -39051949 - MLT1D LTR MaLR 0 505 1 1053 211 253 14 chr15 46643805 46643819 -39051935 + LTR50 LTR ERVL 382 391 -404 1125 224 14 0 chr15 46643819 46644038 -39051716 - MER58A DNA MER1_type 0 224 3 1053 211 253 14 chr15 46644038 46644094 -39051660 + LTR50 LTR ERVL 391 778 -17 32 86 0 0 chr15 46644200 46644281 -39051473 + AT_rich Low_complexity Low_complexity 1 81 0 2226 114 7 0 chr15 46644460 46644766 -39050988 - AluSq SINE Alu -5 308 1 319 197 15 0 chr15 46644928 46644994 -39050760 + MIR SINE MIR 86 152 -110 2088 119 38 0 chr15 46645650 46645943 -39049811 + AluSx SINE Alu 1 304 -8 1611 159 26 45 chr15 46646004 46646313 -39049441 + AluJo SINE Alu 1 303 -9 814 254 20 10 chr15 46646440 46646637 -39049117 - AluSc SINE Alu -5 304 106 1783 187 43 25 chr15 46646741 46647089 -39048665 + L1 LINE L1 4966 5323 -823 2106 143 0 0 chr15 46647089 46647390 -39048364 + AluY SINE Alu 1 301 -10 1783 187 43 25 chr15 46647390 46647437 -39048317 + L1 LINE L1 5323 5368 -778 1091 270 169 40 chr15 46647469 46648213 -39047541 - L1M4 LINE L1 -5361 1181 342 833 144 23 0 chr15 46648371 46648503 -39047251 + AluJb SINE Alu 1 135 -177 458 287 13 0 chr15 46648520 46648670 -39047084 - L1M4 LINE L1 -6383 159 8 369 0 0 0 chr15 46648714 46648755 -39046999 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr15 46649271 46649297 -39046457 + AT_rich Low_complexity Low_complexity 1 26 0 372 256 76 97 chr15 46649438 46649676 -39046078 + HAL1 LINE L1 1 233 -2274 360 348 72 58 chr15 46649720 46650065 -39045689 + HAL1 LINE L1 334 683 -1824 827 123 9 0 chr15 46650228 46650342 -39045412 + AluSg/x SINE Alu 101 215 -94 335 149 0 149 chr15 46650627 46650721 -39045033 - MER33 DNA MER1_type -1 323 244 800 149 0 30 chr15 46650721 46650855 -39044899 + FLAM_C SINE Alu 1 130 -13 1338 134 30 4 chr15 46650857 46651088 -39044666 - MER33 DNA MER1_type -86 238 2 313 314 129 43 chr15 46651133 46651413 -39044341 + L2 LINE L2 716 1019 -2295 233 273 152 48 chr15 46651438 46651603 -39044151 + L2 LINE L2 1180 1361 -1953 2539 59 0 7 chr15 46651817 46652124 -39043630 - AluY SINE Alu -6 305 1 202 283 115 53 chr15 46652124 46652237 -39043517 + L2 LINE L2 3192 3311 -2 297 163 0 20 chr15 46652460 46652509 -39043245 - AluSc SINE Alu -62 237 190 488 238 233 6 chr15 46652510 46652682 -39043072 - MIR SINE MIR -50 212 2 226 39 0 0 chr15 46652880 46652906 -39042848 - MLT2B3 LTR ERVL -2 462 437 1032 188 44 59 chr15 46652939 46653208 -39042546 - MLT2B3 LTR ERVL -21 508 240 309 73 0 0 chr15 46653308 46653349 -39042405 - Alu SINE Alu -259 42 2 225 340 21 69 chr15 46653594 46653738 -39042016 - L2 LINE L2 -219 3053 2917 493 288 259 17 chr15 46653783 46654266 -39041488 - L2 LINE L2 -545 2769 2170 26 0 0 0 chr15 46654349 46654375 -39041379 + AT_rich Low_complexity Low_complexity 1 26 0 504 136 17 119 chr15 46654375 46654493 -39041261 - FLAM_C SINE Alu -16 127 22 2435 80 10 3 chr15 46655108 46655419 -39040335 - AluSq SINE Alu 0 313 1 183 345 52 17 chr15 46656320 46656436 -39039318 + L2 LINE L2 2716 2835 -479 1252 176 20 52 chr15 46656952 46657258 -39038496 - L1MB8 LINE L1 -9 6169 5874 331 222 48 48 chr15 46657410 46657536 -39038218 - L1MC4a LINE L1 -1897 5911 5786 5109 176 64 25 chr15 46658288 46659333 -39036421 + Charlie1a DNA MER1_type 1 1086 -369 748 180 23 0 chr15 46659545 46659673 -39036081 + AluJb SINE Alu 5 135 -177 393 307 13 0 chr15 46659687 46659840 -39035914 - L1M4 LINE L1 -6380 162 8 369 0 0 0 chr15 46659884 46659925 -39035829 + (CA)n Simple_repeat Simple_repeat 1 41 0 255 186 29 57 chr15 46659937 46660007 -39035747 + L1MD2 LINE L1 5938 6005 -354 231 231 66 22 chr15 46660011 46660102 -39035652 - L1MCa LINE L1 -4336 2090 1996 2197 150 8 45 chr15 46660133 46660437 -39035317 - MER47A DNA MER2_type -1957 366 77 2045 118 0 39 chr15 46660437 46660743 -39035011 - AluSx SINE Alu -18 294 1 2197 150 8 45 chr15 46660743 46660817 -39034937 - MER47A DNA MER2_type -2246 77 2 1881 239 143 3 chr15 46660827 46661055 -39034699 - L1MD1 LINE L1 -12 6230 6035 767 163 0 8 chr15 46661055 46661178 -39034576 - FLAM_C SINE Alu -11 122 1 1881 239 143 3 chr15 46661178 46661565 -39034189 - L1MD1 LINE L1 -207 6035 5529 350 208 132 0 chr15 46661592 46661698 -39034056 - L1MD1 LINE L1 -1046 5100 4981 4277 220 179 43 chr15 46661795 46663339 -39032415 + MER52A LTR ERV1 1 1755 0 900 203 4 73 chr15 46663397 46663528 -39032226 + AluJo SINE Alu 5 115 -197 2405 96 0 3 chr15 46663528 46663829 -39031925 + AluSq SINE Alu 1 300 -13 900 203 4 73 chr15 46663829 46663929 -39031825 + AluJo SINE Alu 115 220 -92 289 169 195 13 chr15 46663970 46664047 -39031707 + MER21B LTR ERV1 102 192 -671 1407 131 5 0 chr15 46664053 46664259 -39031495 + AluSg/x SINE Alu 97 303 -7 856 228 94 35 chr15 46664416 46664670 -39031084 - MER21B LTR ERV1 -212 651 383 353 197 13 53 chr15 46664743 46664819 -39030935 - MER21B LTR ERV1 -615 248 176 744 222 7 7 chr15 46664833 46664977 -39030777 - FRAM SINE Alu -32 144 1 497 144 46 172 chr15 46664988 46665156 -39030598 - MER21B LTR ERV1 -697 166 20 2281 167 62 26 chr15 46665156 46665575 -39030179 - Tigger2a DNA MER2_type 0 434 1 286 146 21 0 chr15 46665601 46665649 -39030105 - ORSL DNA AcHobo -225 50 2 246 238 127 48 chr15 46665721 46665847 -39029907 - L2 LINE L2 -734 2580 2445 2135 144 3 0 chr15 46665856 46666168 -39029586 + AluSq SINE Alu 1 313 0 1559 165 13 26 chr15 46666183 46666486 -39029268 + MER31-int LTR ERV1 3492 3790 -1146 1886 91 69 143 chr15 46666486 46666891 -39028863 - THE1C LTR MaLR 0 375 1 226 239 0 22 chr15 46666894 46666986 -39028768 - L1MC4 LINE L1 -1339 6703 6614 330 143 0 0 chr15 46666990 46667053 -39028701 + (TA)n Simple_repeat Simple_repeat 2 64 0 263 196 69 49 chr15 46667068 46667170 -39028584 + MER31-int LTR ERV1 3984 4087 -1036 2852 227 81 47 chr15 46667174 46668499 -39027255 + MER31-int LTR ERV1 3355 7119 -418 2007 184 74 54 chr15 46668499 46668999 -39026755 + LTR54 LTR ERV1 1 510 0 2001 285 99 26 chr15 46669001 46669888 -39025866 - L2 LINE L2 -1050 2264 1313 238 321 166 11 chr15 46669889 46670154 -39025600 + L2 LINE L2 3003 3308 -5 212 291 18 23 chr15 46670210 46670333 -39025421 + MIR SINE MIR 91 212 -50 237 137 0 128 chr15 46670660 46670762 -39024992 + (CGGGG)n Simple_repeat Simple_repeat 2 90 0 27 29 0 0 chr15 46670991 46671025 -39024729 + GC_rich Low_complexity Low_complexity 1 34 0 33 0 0 0 chr15 46672224 46672257 -39023497 + AT_rich Low_complexity Low_complexity 1 33 0 427 260 45 45 chr15 46674828 46674982 -39020772 - MIR SINE MIR -62 200 47 335 243 127 32 chr15 46675208 46675397 -39020357 - L1ME4a LINE L1 -38 6083 5877 2276 75 0 19 chr15 46675488 46675796 -39019958 - AluY SINE Alu -9 302 1 1991 106 18 4 chr15 46675916 46676191 -39019563 + AluSg SINE Alu 1 279 -31 1310 139 41 79 chr15 46676292 46676559 -39019195 - MER47A DNA MER2_type -90 276 20 1774 164 13 3 chr15 46676766 46677065 -39018689 - AluSx SINE Alu -10 302 1 2249 140 27 43 chr15 46677138 46677509 -39018245 + MLT1A1 LTR MaLR 1 365 0 32 43 0 0 chr15 46678943 46678989 -39016765 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr15 46679695 46679726 -39016028 + AT_rich Low_complexity Low_complexity 1 31 0 2144 121 3 3 chr15 46680117 46680423 -39015331 - AluSx SINE Alu -6 306 1 4622 197 50 19 chr15 46680773 46681884 -39013870 - L1 LINE L1 -1245 4901 3757 667 239 77 19 chr15 46681885 46682027 -39013727 - L1M4 LINE L1 -2047 4099 3967 2110 133 0 0 chr15 46682027 46682327 -39013427 - AluSq SINE Alu -13 300 1 667 239 77 19 chr15 46682327 46682443 -39013311 - L1M4 LINE L1 -2179 3967 3826 2255 148 42 39 chr15 46682685 46683117 -39012637 - Tigger2a DNA MER2_type -1 433 1 836 274 79 31 chr15 46683303 46683723 -39012031 - L1MC4a LINE L1 -1978 5830 5391 207 0 0 0 chr15 46683725 46683748 -39012006 + (TTG)n Simple_repeat Simple_repeat 2 24 0 29 0 0 0 chr15 46683748 46683777 -39011977 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr15 46683834 46683869 -39011885 + AT_rich Low_complexity Low_complexity 1 35 0 2371 200 9 45 chr15 46684038 46684686 -39011068 - L1ME4a LINE L1 -536 5823 5198 2706 234 89 65 chr15 46684711 46685490 -39010264 - L1MD1 LINE L1 -13 6229 5470 2035 133 0 13 chr15 46685490 46685792 -39009962 - AluJb SINE Alu -14 298 1 2706 234 89 65 chr15 46685792 46686058 -39009696 - L1MD1 LINE L1 -772 5470 5212 890 217 12 0 chr15 46686058 46686224 -39009530 - FAM SINE Alu -7 168 1 2706 234 89 65 chr15 46686224 46686368 -39009386 - L1MD1 LINE L1 -1030 5212 5073 1522 154 70 19 chr15 46686368 46686627 -39009127 - AluJo SINE Alu -40 272 1 2706 234 89 65 chr15 46686627 46687517 -39008237 - L1MD1 LINE L1 -1169 5073 4085 2022 153 3 0 chr15 46687517 46687818 -39007936 - AluSx SINE Alu -10 302 1 2706 234 89 65 chr15 46687818 46687850 -39007904 - L1MD1 LINE L1 -2157 4085 4055 3729 169 43 3 chr15 46688028 46688752 -39007002 - L1MB7 LINE L1 -1 6183 5431 1105 125 31 7 chr15 46689131 46689417 -39006337 + L1MA4 LINE L1 5891 6288 -12 796 146 8 0 chr15 46690281 46690404 -39005350 + FLAM_A SINE Alu 1 124 -9 243 140 0 0 chr15 46690942 46690992 -39004762 + (A)n Simple_repeat Simple_repeat 1 50 0 3151 278 146 5 chr15 46692688 46694082 -39001672 + L2 LINE L2 1711 3309 -4 265 326 54 63 chr15 46694161 46694382 -39001372 - MLT1K LTR MaLR -239 349 131 330 262 25 8 chr15 46694555 46694677 -39001077 + MER103 DNA DNA 42 165 -1 2283 100 0 3 chr15 46694903 46695203 -39000551 + AluSq SINE Alu 1 299 -14 748 157 171 7 chr15 46695203 46695343 -39000411 + AluJb SINE Alu 134 296 -16 1696 291 80 29 chr15 46696467 46697130 -38998624 + L2 LINE L2 1243 1939 -1375 716 259 137 51 chr15 46697221 46697630 -38998124 + L1ME LINE L1 5381 5824 -297 294 29 0 0 chr15 46698621 46698656 -38997098 + (CA)n Simple_repeat Simple_repeat 1 35 0 324 244 37 12 chr15 46698823 46698905 -38996849 - L1ME4a LINE L1 -207 5914 5831 1987 124 34 0 chr15 46699316 46699614 -38996140 + AluY SINE Alu 1 308 -3 375 319 14 21 chr15 46699697 46699838 -38995916 + L3 LINE CR1 582 721 -856 201 383 130 9 chr15 46699864 46699979 -38995775 - L2 LINE L2 -8 3264 3136 626 258 229 96 chr15 46700044 46700766 -38994988 + L3 LINE CR1 751 1568 -9 218 263 53 0 chr15 46700852 46700909 -38994845 + MIR SINE MIR 45 104 -158 444 310 128 10 chr15 46701714 46701917 -38993837 + MIR SINE MIR 26 252 -10 209 344 119 53 chr15 46702084 46702235 -38993519 - MIR3 SINE MIR -16 192 32 1839 146 0 38 chr15 46702550 46702866 -38992888 - AluJo SINE Alu -8 304 1 2235 110 3 0 chr15 46702919 46703219 -38992535 - AluSq SINE Alu -12 301 1 763 299 105 25 chr15 46704261 46704622 -38991132 + HAL1 LINE L1 529 918 -1589 3646 217 125 34 chr15 46704679 46706011 -38989743 + HAL1 LINE L1 1033 2486 -21 304 267 129 0 chr15 46706742 46706858 -38988896 + MIR SINE MIR 76 206 -56 593 167 28 0 chr15 46706872 46706980 -38988774 + FLAM_A SINE Alu 29 139 -3 197 275 0 0 chr15 46707007 46707047 -38988707 - L2 LINE L2 -24 3289 3250 208 244 0 0 chr15 46707741 46707782 -38987972 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 385 269 11 0 chr15 46708356 46708449 -38987305 + MIR3 SINE MIR 71 164 -44 552 308 107 9 chr15 46708640 46708864 -38986890 + MIR SINE MIR 6 251 -11 23 54 0 0 chr15 46710111 46710148 -38985606 + AT_rich Low_complexity Low_complexity 1 37 0 623 284 65 20 chr15 46710592 46710793 -38984961 + MER58C DNA MER1_type 6 215 0 411 73 0 0 chr15 46711257 46711312 -38984442 + (TA)n Simple_repeat Simple_repeat 1 55 0 785 164 8 0 chr15 46711395 46711523 -38984231 - MER82 DNA MER2_type -498 155 27 2143 117 3 7 chr15 46712659 46712966 -38982788 - AluSx SINE Alu -6 306 1 1853 170 0 10 chr15 46712978 46713290 -38982464 - AluJb SINE Alu -3 309 1 25 0 0 0 chr15 46713297 46713322 -38982432 + AT_rich Low_complexity Low_complexity 1 25 0 1119 203 0 19 chr15 46713325 46713532 -38982222 - AluJb SINE Alu -24 288 86 396 0 0 0 chr15 46714038 46714082 -38981672 + (TG)n Simple_repeat Simple_repeat 2 45 0 1242 139 5 0 chr15 46715347 46715541 -38980213 - L1MC/D LINE L1 -574 5759 5565 4268 219 57 54 chr15 46715544 46717111 -38978643 - L1MEc LINE L1 -1748 4467 2896 4143 166 29 43 chr15 46717115 46717292 -38978462 - L1MA6 LINE L1 -5 6295 6117 2020 138 6 6 chr15 46717292 46717604 -38978150 - AluSx SINE Alu 0 312 1 4143 166 29 43 chr15 46717604 46718263 -38977491 - L1MA6 LINE L1 -183 6117 5451 1942 133 31 11 chr15 46718263 46718549 -38977205 + AluSx SINE Alu 1 292 -20 4143 166 29 43 chr15 46718549 46718573 -38977181 - L1MA6 LINE L1 -849 5451 5428 1484 202 0 17 chr15 46718573 46718860 -38976894 - AluJo SINE Alu -30 282 1 4143 166 29 43 chr15 46718860 46719013 -38976741 - L1MA6 LINE L1 -872 5428 5340 1665 149 59 36 chr15 46719013 46719335 -38976419 + L1MA6 LINE L1 4987 5319 -827 1915 90 9 96 chr15 46719335 46719657 -38976097 + AluSx SINE Alu 1 294 -8 1665 149 59 36 chr15 46719657 46719690 -38976064 + L1 LINE L1 5319 5350 -796 * 2277 215 49 87 chr15 46719680 46720179 -38975575 - L1MEc LINE L1 -3299 2916 2400 758 176 8 0 chr15 46720179 46720310 -38975444 - FLAM_A SINE Alu 0 133 2 2277 215 49 87 chr15 46720310 46720873 -38974881 - L1MEc LINE L1 -3815 2400 1944 1930 109 64 0 chr15 46720873 46721139 -38974615 - AluSg SINE Alu -27 283 1 2277 215 49 87 chr15 46721139 46721702 -38974052 - L1MEc LINE L1 -4271 1944 1361 288 325 135 12 chr15 46721727 46721979 -38973775 + L2 LINE L2 2035 2317 -997 2001 144 0 3 chr15 46722049 46722340 -38973414 + AluJb SINE Alu 1 290 -22 1706 175 7 13 chr15 46723243 46723552 -38972202 - AluJo SINE Alu -2 310 4 240 299 0 0 chr15 46724155 46724252 -38971502 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 206 118 0 0 chr15 46724590 46724624 -38971130 + (T)n Simple_repeat Simple_repeat 1 34 0 2017 118 7 0 chr15 46724645 46724952 -38970802 + AluSx SINE Alu 1 309 0 2998 238 111 68 chr15 46724957 46725905 -38969849 - HAL1 LINE L1 -13 2494 1588 1762 176 10 3 chr15 46725905 46726201 -38969553 - AluJo SINE Alu -10 302 5 2998 238 111 68 chr15 46726201 46726653 -38969101 - HAL1 LINE L1 -919 1588 1014 1738 133 75 0 chr15 46726653 46726931 -38968823 - AluSx SINE Alu -13 299 1 2998 238 111 68 chr15 46726931 46727129 -38968625 - HAL1 LINE L1 -1493 1014 826 1920 125 32 0 chr15 46727148 46727429 -38968325 - AluSg SINE Alu -18 292 3 482 264 133 93 chr15 46727553 46727928 -38967826 - HAL1 LINE L1 -2107 400 11 2135 128 0 7 chr15 46727975 46728272 -38967482 - AluSx SINE Alu -17 295 1 383 155 7 0 chr15 46728218 46728287 -38967467 - Alu SINE Alu -250 53 1 221 186 0 23 chr15 46728330 46728373 -38967381 + MER5B DNA MER1_type 7 48 -130 1612 156 70 4 chr15 46728385 46728655 -38967099 - AluJb SINE Alu -24 288 1 246 299 188 8 chr15 46728656 46728773 -38966981 - MER5B DNA MER1_type -34 144 7 1542 184 7 20 chr15 46729282 46729575 -38966179 - AluJo SINE Alu -23 289 1 414 0 0 0 chr15 46730002 46730048 -38965706 + (CA)n Simple_repeat Simple_repeat 2 47 0 565 61 37 0 chr15 46730303 46730385 -38965369 + L1MA3 LINE L1 6221 6305 0 724 275 57 22 chr15 46731096 46731325 -38964429 - MIR SINE MIR 0 262 26 2718 155 97 50 chr15 46731463 46732103 -38963651 - L1MA7 LINE L1 -1 6290 5621 21 36 0 0 chr15 46732103 46732131 -38963623 + AT_rich Low_complexity Low_complexity 1 28 0 837 161 15 0 chr15 46732135 46732265 -38963489 + FLAM_C SINE Alu 1 132 -1 2158 99 10 0 chr15 46732411 46732705 -38963049 + AluY SINE Alu 1 297 -14 313 336 27 0 chr15 46732764 46732910 -38962844 + L1ME LINE L1 4114 4263 -1883 519 254 132 28 chr15 46733113 46733183 -38962571 - L1MC4a LINE L1 -1750 6058 5997 195 42 0 0 chr15 46733183 46733207 -38962547 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 519 254 132 28 chr15 46733207 46733424 -38962330 - L1MC4a LINE L1 -1811 5997 5741 413 317 158 20 chr15 46733463 46733861 -38961893 + L1ME LINE L1 4474 4926 -1220 562 255 57 60 chr15 46734320 46734595 -38961159 + L1ME LINE L1 5496 5771 -350 204 318 0 0 chr15 46734801 46734864 -38960890 + L3 LINE CR1 973 1035 -542 457 271 54 42 chr15 46734875 46735041 -38960713 + MIR SINE MIR 20 187 -75 1616 143 7 28 chr15 46735170 46735456 -38960298 + AluJo SINE Alu 21 300 -12 2213 88 0 0 chr15 46735780 46736064 -38959690 - AluSq SINE Alu -29 284 1 322 307 224 21 chr15 46736064 46736305 -38959449 + L3 LINE CR1 1081 1370 -207 319 253 120 40 chr15 46736346 46736496 -38959258 - MIR SINE MIR -54 208 47 807 189 0 0 chr15 46736787 46736935 -38958819 + L1MA5A LINE L1 6142 6289 -8 21 82 0 0 chr15 46736963 46737012 -38958742 + AT_rich Low_complexity Low_complexity 1 49 0 245 175 163 38 chr15 46738218 46738298 -38957456 - L2 LINE L2 -1 3312 3223 825 184 32 19 chr15 46738349 46738507 -38957247 + FRAM SINE Alu 4 163 -13 218 282 26 13 chr15 46738600 46738678 -38957076 + CT-rich Low_complexity Low_complexity 3 81 0 21 0 0 0 chr15 46740162 46740183 -38955571 + AT_rich Low_complexity Low_complexity 1 21 0 650 209 12 43 chr15 46742623 46742786 -38952968 - MER103 DNA DNA -1 165 8 833 279 67 30 chr15 46744138 46744659 -38951095 - L1ME4a LINE L1 -197 5924 5378 347 264 145 96 chr15 46744699 46745188 -38950566 - L1ME4a LINE L1 -838 5308 4796 782 302 144 57 chr15 46745250 46745713 -38950041 - L2 LINE L2 -19 3294 2873 2074 126 10 0 chr15 46745713 46746014 -38949740 - AluSg SINE Alu -6 304 1 782 302 144 57 chr15 46746014 46746363 -38949391 - L2 LINE L2 -440 2873 2556 251 53 0 26 chr15 46746363 46746401 -38949353 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 782 302 144 57 chr15 46746401 46746586 -38949168 - L2 LINE L2 -757 2556 2192 22 0 0 0 chr15 46746615 46746637 -38949117 + AT_rich Low_complexity Low_complexity 1 22 0 390 313 126 15 chr15 46746716 46747377 -38948377 - L1ME4a LINE L1 -1538 4608 3875 1229 153 66 35 chr15 46748000 46748228 -38947526 + MER46A DNA MER2_type 2 236 0 240 35 0 0 chr15 46748344 46748373 -38947381 + (TATAA)n Simple_repeat Simple_repeat 1 29 0 999 113 0 0 chr15 46748826 46748959 -38946795 + AluSq/x SINE Alu 1 133 -180 2030 114 0 0 chr15 46749070 46749350 -38946404 - AluY SINE Alu -31 280 1 335 333 0 63 chr15 46749585 46749774 -38945980 + MIR SINE MIR 49 225 -37 195 146 0 0 chr15 46749978 46750019 -38945735 + (T)n Simple_repeat Simple_repeat 1 41 0 613 294 62 19 chr15 46750397 46750608 -38945146 + MIR SINE MIR 37 256 -6 321 361 34 0 chr15 46751206 46751325 -38944429 + MIR3 SINE MIR 64 186 -22 198 0 0 0 chr15 46752553 46752575 -38943179 + (A)n Simple_repeat Simple_repeat 1 22 0 769 318 143 23 chr15 46753181 46753526 -38942228 - L2 LINE L2 -5 3308 3006 2174 107 0 19 chr15 46753526 46753836 -38941918 + AluSx SINE Alu 1 304 -8 769 318 143 23 chr15 46753836 46754346 -38941408 - L2 LINE L2 -307 3006 2290 461 326 230 23 chr15 46754353 46755013 -38940741 + L2 LINE L2 1590 2386 -928 297 319 32 0 chr15 46755634 46755728 -38940026 + L2 LINE L2 3185 3281 -32 859 143 118 0 chr15 46755939 46756100 -38939654 + MER3 DNA MER1_type 12 191 -18 3125 179 74 40 chr15 46756501 46757681 -38938073 - L1ME1 LINE L1 -68 6098 4680 1991 230 41 32 chr15 46757709 46758295 -38937459 + L1M4 LINE L1 3784 4374 -1772 2462 48 39 15 chr15 46808295 46808627 -38887127 + L1PA6 LINE L1 5799 6138 -16 29 70 0 0 chr15 46808627 46808684 -38887070 + AT_rich Low_complexity Low_complexity 1 57 0 286 211 53 0 chr15 46809077 46809134 -38886620 + Tigger3b DNA MER2_type 1 60 -1171 1101 78 42 24 chr15 46809149 46809315 -38886439 + Tigger3b DNA MER2_type 257 425 -806 706 159 0 0 chr15 46809420 46809527 -38886227 - FLAM_A SINE Alu -14 128 22 1312 177 22 33 chr15 46809529 46809800 -38885954 - MLT2B3 LTR ERVL -286 268 1 196 200 94 82 chr15 46810110 46810195 -38885559 - MER5A DNA MER1_type -23 166 81 284 369 40 0 chr15 46810727 46810876 -38884878 - MIR3 SINE MIR -7 201 47 353 146 0 0 chr15 46811807 46811862 -38883892 - Alu SINE Alu -247 55 1 192 97 0 0 chr15 46812777 46812808 -38882946 + (T)n Simple_repeat Simple_repeat 1 31 0 1712 169 20 3 chr15 46813266 46813562 -38882192 - AluJo SINE Alu -11 301 1 240 35 0 0 chr15 46813633 46813662 -38882092 + (TG)n Simple_repeat Simple_repeat 2 30 0 2229 124 0 3 chr15 46814141 46814448 -38881306 - AluSx SINE Alu -6 306 1 2230 116 0 0 chr15 46814457 46814750 -38881004 - AluSx SINE Alu -19 293 1 1337 140 10 0 chr15 46815834 46816034 -38879720 + AluSx SINE Alu 1 202 -110 526 253 172 20 chr15 46816228 46816426 -38879328 - MIR SINE MIR -13 249 22 1080 168 67 24 chr15 46816622 46816831 -38878923 - Tigger3(Golem) DNA MER2_type -1 3028 2811 2825 34 3 14 chr15 46816934 46817285 -38878469 - L1PA6 LINE L1 -311 5843 5497 1078 162 0 6 chr15 46817918 46818091 -38877663 + FAM SINE Alu 1 172 -3 817 124 0 16 chr15 46819260 46819381 -38876373 - FLAM_C SINE Alu -14 119 1 324 232 61 10 chr15 46819977 46820076 -38875678 - L1ME4a LINE L1 -18 6103 6000 328 258 11 0 chr15 46820147 46820236 -38875518 - L1ME4a LINE L1 -260 5861 5772 30 59 0 0 chr15 46820982 46821033 -38874721 + AT_rich Low_complexity Low_complexity 1 51 0 417 164 126 138 chr15 46821591 46821707 -38874047 - MER5A DNA MER1_type -2 187 72 2239 125 3 0 chr15 46821707 46822018 -38873736 + AluSx SINE Alu 1 312 0 417 164 126 138 chr15 46822018 46822060 -38873694 - MER5A DNA MER1_type -117 72 31 1319 168 34 0 chr15 46822779 46822988 -38872766 + AluSg/x SINE Alu 74 289 -21 2131 131 0 6 chr15 46824274 46824587 -38871167 - AluSp SINE Alu -2 311 1 414 56 0 0 chr15 46825167 46825221 -38870533 - Alu SINE Alu -257 54 1 1719 166 23 7 chr15 46825438 46825740 -38870014 - AluJb SINE Alu -5 307 1 252 288 150 0 chr15 46825991 46826071 -38869683 - L2 LINE L2 -37 3235 3144 1917 106 29 18 chr15 46827040 46827314 -38868440 - AluSg SINE Alu -33 277 1 246 50 25 0 chr15 46827467 46827507 -38868247 - L1MA3 LINE L1 0 6305 6265 324 0 0 0 chr15 46827769 46827805 -38867949 + (TG)n Simple_repeat Simple_repeat 2 37 0 240 35 0 0 chr15 46827831 46827860 -38867894 + (TG)n Simple_repeat Simple_repeat 2 30 0 339 70 0 0 chr15 46827860 46827903 -38867851 - AluSp SINE Alu -24 279 237 1234 94 6 0 chr15 46827903 46828063 -38867691 - AluSp SINE Alu -152 161 1 326 233 0 58 chr15 46828538 46828641 -38867113 + MIR SINE MIR 96 192 -70 5770 125 51 8 chr15 46829058 46829967 -38865787 + Tigger3(Golem) DNA MER2_type 1 948 -2081 11579 96 34 15 chr15 46830067 46830858 -38864896 + Tigger3(Golem) DNA MER2_type 1218 1993 -1036 2257 94 0 13 chr15 46830858 46831165 -38864589 + AluSg SINE Alu 1 303 -7 11579 96 34 15 chr15 46831165 46832152 -38863602 + Tigger3(Golem) DNA MER2_type 1993 3029 0 21 0 0 0 chr15 46832235 46832256 -38863498 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr15 46833241 46833275 -38862479 + (A)n Simple_repeat Simple_repeat 1 34 0 214 274 0 27 chr15 46835780 46835853 -38859901 + (TATG)n Simple_repeat Simple_repeat 3 73 0 332 655 24 0 chr15 46837462 46837630 -38858124 + MER69A DNA AcHobo 5 176 -1 340 261 78 34 chr15 46838796 46838970 -38856784 - MIR SINE MIR -66 196 16 2315 84 7 0 chr15 46839576 46839875 -38855879 - AluSq SINE Alu -12 301 1 1180 129 0 0 chr15 46841245 46841416 -38854338 - AluSg/x SINE Alu -17 295 125 188 287 81 11 chr15 46841499 46841586 -38854168 - MIR3 SINE MIR -8 200 108 485 149 108 47 chr15 46843776 46843924 -38851830 - L1ME4a LINE L1 -2 6119 5963 2082 97 0 23 chr15 46844071 46844370 -38851384 + AluSx SINE Alu 1 292 -20 205 289 26 13 chr15 46844929 46845005 -38850749 + C-rich Low_complexity Low_complexity 2 78 0 834 161 33 17 chr15 46845007 46845187 -38850567 + MER53 DNA DNA 2 184 -5 247 216 39 0 chr15 46845187 46845238 -38850516 + C-rich Low_complexity Low_complexity 3 55 0 286 281 177 20 chr15 46847063 46847266 -38848488 + L2 LINE L2 3079 3313 0 456 200 185 0 chr15 46847376 46847511 -38848243 + MER63D DNA MER1_type 7 166 -895 655 132 0 0 chr15 46847613 46847704 -38848050 - AluS SINE Alu -221 92 2 491 234 7 36 chr15 46847754 46847891 -38847863 + MER63D DNA MER1_type 310 442 -619 396 195 81 0 chr15 46847991 46848078 -38847676 + MER63D DNA MER1_type 964 1057 -5 757 256 70 25 chr15 46848473 46848715 -38847039 + MER115 DNA AcHobo 1 253 -440 306 256 0 26 chr15 46848725 46848803 -38846951 - L2 LINE L2 -233 3080 3005 252 256 0 0 chr15 46849128 46849199 -38846555 - MIR SINE MIR -60 148 77 284 263 50 30 chr15 46850245 46850344 -38845410 + MIR SINE MIR 49 149 -59 205 246 16 0 chr15 46850809 46850870 -38844884 + MER91A DNA MER1_type 112 173 -23 191 88 29 0 chr15 46852421 46852455 -38843299 + (CA)n Simple_repeat Simple_repeat 1 35 0 299 294 188 25 chr15 46853015 46853175 -38842579 + Charlie8 DNA MER1_type 18 203 -2214 183 262 135 7 chr15 46854963 46855104 -38840650 + MIR3 SINE MIR 4 162 -46 973 114 123 52 chr15 46856891 46857002 -38838752 - Tigger4(Zombi) DNA MER2_type 0 2731 2629 1580 164 137 0 chr15 46857002 46857264 -38838490 - AluJb SINE Alu -2 300 3 973 114 123 52 chr15 46857264 46857363 -38838391 - Tigger4(Zombi) DNA MER2_type -102 2629 2506 1969 133 3 7 chr15 46857382 46857676 -38838078 - AluSx SINE Alu -19 293 1 2180 111 0 9 chr15 46857682 46857997 -38837757 - AluSx SINE Alu 0 312 1 804 89 89 8 chr15 46858000 46858123 -38837631 - AluSq/x SINE Alu -179 133 1 564 163 0 31 chr15 46858123 46858221 -38837533 - Tigger4(Zombi) DNA MER2_type -2635 96 2 186 262 16 16 chr15 46859020 46859081 -38836673 - MIR SINE MIR -67 141 81 439 304 37 19 chr15 46859152 46859313 -38836441 + MIR3 SINE MIR 29 192 -16 322 309 50 22 chr15 46859803 46859942 -38835812 + L1ME4a LINE L1 5713 5855 -266 263 130 0 37 chr15 46859956 46860010 -38835744 - FLAM_A SINE Alu 0 133 82 853 208 104 0 chr15 46860011 46860203 -38835551 - AluJo SINE Alu -96 216 5 230 225 135 11 chr15 46860734 46860823 -38834931 - MIR3 SINE MIR -26 182 83 600 272 19 54 chr15 46861064 46861361 -38834393 - L1MC/D LINE L1 -297 5824 5560 557 219 229 10 chr15 46861361 46861553 -38834201 + MIR SINE MIR 29 262 0 207 305 34 0 chr15 46861571 46861630 -38834124 - L2 LINE L2 -2 3311 3251 939 140 13 0 chr15 46861679 46861829 -38833925 - AluJb SINE Alu -4 308 157 229 264 209 0 chr15 46862298 46862389 -38833365 - MIR3 SINE MIR -23 185 76 930 257 84 0 chr15 46862903 46863140 -38832614 - MIR SINE MIR -1 261 5 290 296 97 42 chr15 46863154 46863370 -38832384 + MLT1K LTR MaLR 202 429 -159 335 283 216 8 chr15 46864144 46864342 -38831412 - MIR3 SINE MIR -15 247 10 261 225 34 56 chr15 46864595 46864684 -38831070 + MLT1K LTR MaLR 502 588 0 1561 180 62 0 chr15 46864741 46864907 -38830847 - AluJb SINE Alu -5 307 114 266 0 29 0 chr15 46864907 46864941 -38830813 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1561 180 62 0 chr15 46864941 46865063 -38830691 - AluJb SINE Alu -198 114 1 6399 56 8 296 chr15 46865123 46867059 -38828695 + SVA Other Other 8 1385 -1 2016 118 10 16 chr15 46867676 46868015 -38827739 + AluSq SINE Alu 1 313 0 1103 177 5 0 chr15 46868017 46868203 -38827551 + AluJb SINE Alu 121 307 -5 1899 152 10 0 chr15 46868252 46868554 -38827200 + AluSx SINE Alu 1 305 -7 279 271 14 50 chr15 46869097 46869237 -38826517 + HAL1 LINE L1 2030 2164 -343 1031 183 0 21 chr15 46869394 46869580 -38826174 - AluJb SINE Alu -11 301 120 2152 112 10 0 chr15 46869603 46869907 -38825847 + AluSq SINE Alu 1 307 -6 631 196 52 46 chr15 46869918 46869950 -38825804 + MIR SINE MIR 2 32 -230 2309 83 0 3 chr15 46869950 46870251 -38825503 + AluSg SINE Alu 1 300 -10 631 196 52 46 chr15 46870251 46870371 -38825383 + MIR SINE MIR 32 155 -107 294 278 217 9 chr15 46870707 46870822 -38824932 + MIR3 SINE MIR 5 143 -65 324 247 0 0 chr15 46871442 46871519 -38824235 + MER96 DNA MER1_type? 2 78 -97 278 263 62 48 chr15 46871657 46871916 -38823838 + L2 LINE L2 2932 3272 0 321 172 0 0 chr15 46872802 46872866 -38822888 + (CGGGG)n Simple_repeat Simple_repeat 2 65 0 410 287 61 24 chr15 46873580 46873744 -38822010 + MIR SINE MIR 22 191 -71 209 333 73 16 chr15 46874354 46874477 -38821277 - MIR SINE MIR -44 218 89 2175 101 0 3 chr15 46875219 46875515 -38820239 - AluSg SINE Alu -15 295 1 2083 126 0 3 chr15 46875818 46876127 -38819627 + AluSx SINE Alu 1 308 -4 352 261 232 7 chr15 46876469 46876611 -38819143 - MIR3 SINE MIR -27 181 8 227 288 59 52 chr15 46877297 46877450 -38818304 - MLT1K LTR MaLR -238 350 197 2139 100 0 0 chr15 46877793 46878114 -38817640 + AluSx SINE Alu 1 321 0 735 339 8 16 chr15 46878120 46878365 -38817389 - MIR SINE MIR -11 251 9 775 142 16 8 chr15 46878515 46878642 -38817112 + AluSg/x SINE Alu 169 296 -16 417 20 0 0 chr15 46878642 46878692 -38817062 + (TA)n Simple_repeat Simple_repeat 2 51 0 390 284 29 0 chr15 46878859 46878961 -38816793 - L2 LINE L2 -2 3311 3207 805 286 50 73 chr15 46878974 46879145 -38816609 + L1MEd LINE L1 705 878 -5432 3495 193 38 3 chr15 46879145 46879833 -38815921 + L1MB7 LINE L1 5473 6184 0 805 286 50 73 chr15 46879833 46879934 -38815820 + L1MEd LINE L1 878 980 -5330 2712 29 0 0 chr15 46879934 46880248 -38815506 + AluYb8 SINE Alu 1 314 -4 1434 160 23 40 chr15 46880257 46880583 -38815171 + AluJo SINE Alu 1 312 0 805 286 50 73 chr15 46880583 46880901 -38814853 + L1MEd LINE L1 988 1312 -4998 2283 96 0 0 chr15 46880901 46881193 -38814561 + AluSg SINE Alu 1 292 -18 2238 99 3 0 chr15 46881193 46881485 -38814269 + AluSc SINE Alu 12 304 -5 805 286 50 73 chr15 46881485 46881838 -38813916 + L1MEd LINE L1 1310 1673 -4637 206 326 0 0 chr15 46882187 46882282 -38813472 + A-rich Low_complexity Low_complexity 1 95 0 1414 245 81 81 chr15 46882293 46882458 -38813296 + L1MEd LINE L1 2104 2268 -3861 247 116 0 0 chr15 46882458 46882501 -38813253 + MADE1 DNA Mariner 1 43 -37 1414 245 81 81 chr15 46882501 46883364 -38812390 + L1MEd LINE L1 2267 3174 -2955 2110 129 0 10 chr15 46883374 46883669 -38812085 + AluSx SINE Alu 1 292 -20 383 279 44 79 chr15 46883709 46883760 -38811994 + L1MEd LINE L1 3204 3255 -2874 2334 91 0 3 chr15 46883760 46884069 -38811685 + AluSx SINE Alu 1 308 -4 383 279 44 79 chr15 46884069 46884246 -38811508 + L1MEd LINE L1 3255 3424 -2705 7240 138 25 14 chr15 46884252 46885587 -38810167 + L1M3f LINE L1 1 1346 -4065 198 0 0 0 chr15 46885602 46885624 -38810130 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6476 63 19 20 chr15 46885629 46886533 -38809221 + HUERS-P1 LTR ERV1 2996 3899 -2364 2379 110 0 0 chr15 46886533 46886842 -38808912 + AluSx SINE Alu 1 309 -3 2355 77 0 19 chr15 46886846 46887159 -38808595 + AluY SINE Alu 5 311 0 6476 63 19 20 chr15 46887159 46887195 -38808559 + HUERS-P1 LTR ERV1 3902 3940 -2323 180 0 0 0 chr15 46887195 46887215 -38808539 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2799 220 14 39 chr15 46887215 46887841 -38807913 + L1M3f LINE L1 1347 1948 -4380 1614 156 111 0 chr15 46887841 46888111 -38807643 + AluSx SINE Alu 1 300 -12 2799 220 14 39 chr15 46888111 46888340 -38807414 + L1M3f LINE L1 1948 2181 -4147 1161 186 0 10 chr15 46888341 46888545 -38807209 + AluJb SINE Alu 1 202 -110 2113 104 3 3 chr15 46888645 46888933 -38806821 - AluSx SINE Alu -24 288 1 719 281 47 3 chr15 46888948 46889247 -38806507 + L1ME LINE L1 5293 5604 -566 245 261 299 0 chr15 46889273 46889430 -38806324 + L1ME LINE L1 5683 5886 -284 2462 29 0 39 chr15 46890530 46890837 -38804917 - AluY SINE Alu -16 295 1 792 134 124 6 chr15 46891023 46891201 -38804553 + MER33 DNA MER1_type 1 192 -106 628 117 35 62 chr15 46892391 46892442 -38803312 + MER33 DNA MER1_type 184 235 -2350 1600 197 16 0 chr15 46892442 46892747 -38803007 - AluJb SINE Alu -2 310 1 2312 103 0 6 chr15 46892756 46893067 -38802687 - AluSx SINE Alu -3 309 1 628 117 35 62 chr15 46893067 46893150 -38802604 + MER33 DNA MER1_type 243 324 0 887 180 88 0 chr15 46893246 46893463 -38802291 + MER45C DNA AcHobo 4 239 -714 338 226 20 62 chr15 46893631 46893826 -38801928 + MER45C DNA AcHobo 482 668 -285 771 143 196 14 chr15 46894063 46894272 -38801482 + MER45B DNA AcHobo 794 1040 0 547 257 100 0 chr15 46894272 46894412 -38801342 + L2 LINE L2 835 988 -2326 309 91 0 74 chr15 46894412 46894533 -38801221 + (TA)n Simple_repeat Simple_repeat 2 113 0 495 89 3 81 chr15 46894545 46894930 -38800824 + (TA)n Simple_repeat Simple_repeat 1 354 0 1774 160 0 4 chr15 46895030 46895299 -38800455 - AluSx SINE Alu -44 268 1 1262 212 19 0 chr15 46895384 46895643 -38800111 + Tigger7 DNA MER2_type 1 264 -469 573 152 0 0 chr15 46895643 46895735 -38800019 + Tigger7 DNA MER2_type 2389 2480 -7 2623 174 31 49 chr15 46895764 46895797 -38799957 + L1MB5 LINE L1 5566 5598 -576 2399 99 0 3 chr15 46895797 46896099 -38799655 - AluSx SINE Alu -11 301 1 2623 174 31 49 chr15 46896099 46896676 -38799078 + L1MB5 LINE L1 5598 6165 -9 284 177 0 16 chr15 46896718 46896780 -38798974 + MER66B LTR ERV1 288 348 -138 21 82 0 0 chr15 46896959 46897008 -38798746 + AT_rich Low_complexity Low_complexity 1 49 0 563 229 9 0 chr15 46897243 46897348 -38798406 + MER58 DNA MER1_type 1 106 -2314 1241 159 216 0 chr15 46897355 46897600 -38798154 - AluJb SINE Alu 0 302 5 499 265 9 18 chr15 46897609 46897800 -38797954 - L1MC/D LINE L1 -2130 5678 5451 645 168 67 136 chr15 46897841 46898187 -38797567 + L1MC5 LINE L1 7610 7931 -30 356 264 108 23 chr15 46898206 46898335 -38797419 - L2 LINE L2 -1482 1832 1693 373 221 18 35 chr15 46898455 46898568 -38797186 - L1ME3A LINE L1 -8 6162 6052 1074 183 0 0 chr15 46898617 46898792 -38796962 + FRAM SINE Alu 1 174 -2 1983 205 86 42 chr15 46898884 46899547 -38796207 - L1ME3A LINE L1 -225 5945 5254 38 51 0 0 chr15 46899578 46899637 -38796117 + AT_rich Low_complexity Low_complexity 1 59 0 728 241 13 17 chr15 46899649 46899886 -38795868 - L1ME3A LINE L1 -1421 4725 4490 493 104 117 0 chr15 46899907 46899984 -38795770 - AluSc SINE Alu -22 287 202 686 227 32 50 chr15 46899986 46900329 -38795425 - MER110 LTR ERV1 -30 461 166 238 233 0 78 chr15 46900404 46900494 -38795260 - MER110A LTR ERV1 -306 162 80 26 0 0 0 chr15 46900678 46900704 -38795050 + AT_rich Low_complexity Low_complexity 1 26 0 269 266 32 0 chr15 46900810 46900904 -38794850 - L1ME LINE L1 -457 5664 5568 283 56 0 0 chr15 46900904 46900940 -38794814 - U2 snRNA snRNA -152 36 1 228 318 41 31 chr15 46900941 46901136 -38794618 - L1ME LINE L1 -544 5577 5381 2095 147 0 3 chr15 46901334 46901641 -38794113 - AluSx SINE Alu -6 306 1 1207 239 59 30 chr15 46901878 46902304 -38793450 - MLT1J1 LTR MaLR 0 446 9 268 223 125 54 chr15 46902445 46902557 -38793197 - L1ME LINE L1 -658 5504 5385 879 258 26 20 chr15 46902707 46903056 -38792698 + L1M4 LINE L1 2667 3017 -3129 616 242 59 71 chr15 46903360 46903458 -38792296 + L1M4 LINE L1 2964 3062 -3084 2471 98 0 0 chr15 46903458 46903765 -38791989 + AluSx SINE Alu 1 307 -5 616 242 59 71 chr15 46903765 46903776 -38791978 + L1M4 LINE L1 3062 3072 -3074 2393 100 0 0 chr15 46903776 46904087 -38791667 + AluSx SINE Alu 1 311 -1 616 242 59 71 chr15 46904087 46904257 -38791497 + L1M4 LINE L1 3072 3243 -2903 864 205 19 0 chr15 46904257 46904418 -38791336 + FRAM SINE Alu 1 164 -2 616 242 59 71 chr15 46904418 46904697 -38791057 + L1M4 LINE L1 3243 3517 -2629 2256 112 0 13 chr15 46904820 46905125 -38790629 + AluSx SINE Alu 1 301 -11 273 242 15 15 chr15 46905221 46905287 -38790467 + MIR SINE MIR 79 144 -118 915 285 65 15 chr15 46905332 46905792 -38789962 + L1ME4a LINE L1 5517 5999 -122 207 254 0 55 chr15 46906648 46906703 -38789051 + MIR SINE MIR 23 74 -188 645 227 155 16 chr15 46906775 46906969 -38788785 - MIR SINE MIR -34 228 8 348 310 0 0 chr15 46907000 46907116 -38788638 - MIR SINE MIR 0 262 147 277 253 24 24 chr15 46907240 46907323 -38788431 - MIR3 SINE MIR -6 202 120 671 275 77 22 chr15 46907401 46907623 -38788131 - MIR SINE MIR -21 241 8 625 280 45 45 chr15 46908054 46908282 -38787472 + MIR SINE MIR 5 232 -30 182 270 111 0 chr15 46908940 46909003 -38786751 - MIR SINE MIR -82 180 111 258 235 25 0 chr15 46910068 46910149 -38785605 + GA-rich Low_complexity Low_complexity 2 84 0 998 258 90 13 chr15 46910745 46911055 -38784699 + L2 LINE L2 2635 2968 -346 291 224 71 12 chr15 46911188 46911273 -38784481 + L2 LINE L2 3222 3311 -2 391 308 57 105 chr15 46914436 46914751 -38781003 - L2 LINE L2 -5 3267 2968 2312 59 10 0 chr15 46915766 46916055 -38779699 - AluY SINE Alu -19 292 1 214 280 133 0 chr15 46917350 46917425 -38778329 + MIR SINE MIR 104 188 -74 1119 201 52 81 chr15 46917523 46917832 -38777922 + AluJb SINE Alu 1 300 -2 2318 107 3 0 chr15 46918027 46918326 -38777428 - AluSp SINE Alu -13 300 1 446 194 0 31 chr15 46918388 46918486 -38777268 + MIR SINE MIR 135 229 -33 3089 171 50 55 chr15 46918655 46918857 -38776897 - L1ME3 LINE L1 0 6162 5961 2115 113 70 14 chr15 46918857 46919202 -38776552 + THE1B LTR MaLR 1 364 0 3089 171 50 55 chr15 46919202 46919830 -38775924 - L1ME3 LINE L1 -201 5961 5336 664 186 7 57 chr15 46919834 46919974 -38775780 - FLAM_C SINE Alu 0 133 1 727 221 91 146 chr15 46919980 46920531 -38775223 - L1ME3 LINE L1 -949 5197 4617 499 188 0 0 chr15 46920531 46920616 -38775138 - AluJb SINE Alu -25 287 203 233 57 29 0 chr15 46920616 46920651 -38775103 + (CA)n Simple_repeat Simple_repeat 1 36 0 727 221 91 146 chr15 46920651 46920887 -38774867 - L1ME3 LINE L1 -1527 4619 4373 237 162 140 103 chr15 46920960 46921035 -38774719 - MER97b DNA MER1_type? -194 859 775 2226 104 0 10 chr15 46921035 46921332 -38774422 - AluSq SINE Alu -19 294 1 237 162 140 103 chr15 46921332 46921392 -38774362 - MER97b DNA MER1_type? -278 775 719 576 226 85 34 chr15 46921425 46921602 -38774152 - L1ME3 LINE L1 -9 6153 5968 1193 170 74 74 chr15 46921753 46921972 -38773782 - MLT1A1 LTR MaLR 0 365 144 2155 120 17 0 chr15 46921972 46922271 -38773483 - AluSx SINE Alu -8 304 1 1193 170 74 74 chr15 46922271 46922416 -38773338 - MLT1A1 LTR MaLR -220 145 1 319 236 79 22 chr15 46922940 46923029 -38772725 - L1ME3A LINE L1 -5 6165 6072 600 240 123 5 chr15 46923033 46923237 -38772517 - L1ME3A LINE L1 -144 6026 5799 232 315 11 11 chr15 46923538 46923630 -38772124 - MIR SINE MIR 0 262 171 22 56 0 0 chr15 46925962 46925998 -38769756 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 46927435 46927464 -38768290 + AT_rich Low_complexity Low_complexity 1 29 0 318 267 113 20 chr15 46930305 46930500 -38765254 - L1MC4a LINE L1 -1907 5901 5689 235 253 63 26 chr15 46930571 46930749 -38765005 - L1MC4a LINE L1 -584 5537 5353 2007 151 0 29 chr15 46931079 46931390 -38764364 - AluJb SINE Alu -10 302 1 189 0 0 0 chr15 46931574 46931595 -38764159 + (T)n Simple_repeat Simple_repeat 1 21 0 325 286 143 21 chr15 46931968 46932108 -38763646 - MIR3 SINE MIR -32 176 20 193 194 0 0 chr15 46932502 46932533 -38763221 - L2 LINE L2 -21 3292 3262 1347 155 0 18 chr15 46932561 46932787 -38762967 + AluJo SINE Alu 81 302 -10 1400 131 28 0 chr15 46932975 46933189 -38762565 + AluJb SINE Alu 71 290 -22 23 0 0 0 chr15 46933560 46933583 -38762171 + AT_rich Low_complexity Low_complexity 1 23 0 490 255 76 14 chr15 46934501 46934646 -38761108 + MER5B DNA MER1_type 25 178 0 341 271 45 68 chr15 46934910 46935043 -38760711 + Charlie8 DNA MER1_type 1 130 -2287 188 271 118 35 chr15 46935394 46935479 -38760275 + L3 LINE CR1 792 883 -694 317 322 149 0 chr15 46935525 46935699 -38760055 + L3 LINE CR1 1297 1496 -81 540 0 0 0 chr15 46936197 46936257 -38759497 + (TG)n Simple_repeat Simple_repeat 2 61 0 242 198 93 23 chr15 46937490 46937576 -38758178 + MIR3 SINE MIR 78 169 -39 1566 272 158 18 chr15 46938241 46938434 -38757320 + L2 LINE L2 1986 2151 -1162 960 213 112 16 chr15 46938434 46938683 -38757071 - ORSL DNA AcHobo 0 275 3 1566 272 158 18 chr15 46938683 46939156 -38756598 + L2 LINE L2 2151 2557 -756 180 0 0 0 chr15 46939156 46939176 -38756578 + (CTCTG)n Simple_repeat Simple_repeat 3 22 0 1566 272 158 18 chr15 46939176 46939674 -38756080 + L2 LINE L2 2557 3312 -1 214 271 59 93 chr15 46939746 46939864 -38755890 + MIR SINE MIR 69 182 -80 2181 87 0 13 chr15 46940046 46940345 -38755409 + AluY SINE Alu 1 295 -16 519 249 12 24 chr15 46942071 46942240 -38753514 + L1M4 LINE L1 3802 3968 -2178 6291 122 3 11 chr15 46942256 46942601 -38753153 + HSMAR2 DNA Mariner 3 349 -953 2063 92 0 11 chr15 46942601 46942927 -38752827 + AluSc SINE Alu 1 323 0 6291 122 3 11 chr15 46942927 46943553 -38752201 + HSMAR2 DNA Mariner 349 967 -335 3630 207 15 11 chr15 46943654 46944573 -38751181 + L1M1 LINE L1 2373 3295 -2851 1574 112 0 0 chr15 46944573 46944788 -38750966 + AluSx SINE Alu 1 215 -97 6564 142 11 38 chr15 46944789 46945127 -38750627 + L1M1 LINE L1 4065 4410 -1890 180 0 0 0 chr15 46945127 46945147 -38750607 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6564 142 11 38 chr15 46945147 46945446 -38750308 + L1M1 LINE L1 4410 4715 -1585 2113 131 3 0 chr15 46945446 46945751 -38750003 + AluSq SINE Alu 1 306 -7 6564 142 11 38 chr15 46945751 46946065 -38749689 + L1M1 LINE L1 4715 5036 -1264 2391 59 0 20 chr15 46946065 46946371 -38749383 + AluY SINE Alu 1 300 -11 6564 142 11 38 chr15 46946371 46947102 -38748652 + L1M1 LINE L1 5036 5723 -577 294 286 50 14 chr15 46947765 46947905 -38747849 - L1ME4a LINE L1 -49 6072 5928 234 105 0 0 chr15 46948604 46948642 -38747112 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 4055 141 5 0 chr15 46948642 46949271 -38746483 + HSMAR2 DNA Mariner 334 965 -337 1861 90 6 45 chr15 46949271 46949452 -38746302 - HSMAR2 DNA Mariner 0 1302 1136 1995 103 16 39 chr15 46949452 46949764 -38745990 - AluSq SINE Alu -8 305 1 1861 90 6 45 chr15 46949764 46949894 -38745860 - HSMAR2 DNA Mariner -166 1136 1003 23 33 0 0 chr15 46951639 46951669 -38744085 + AT_rich Low_complexity Low_complexity 1 30 0 364 246 26 35 chr15 46951735 46951849 -38743905 + MIR SINE MIR 2 114 -148 1065 213 205 35 chr15 46951983 46952378 -38743376 + MLT1J LTR MaLR 1 462 -49 403 284 17 17 chr15 46952428 46952544 -38743210 - MIR3 SINE MIR -45 163 48 814 234 0 6 chr15 46953214 46953385 -38742369 - MER97a DNA MER1_type? -711 183 14 342 269 20 81 chr15 46954997 46955194 -38740560 + MIR3 SINE MIR 9 193 -15 407 256 31 31 chr15 46957490 46957619 -38738135 + MIR SINE MIR 114 242 -20 241 316 10 0 chr15 46957699 46957797 -38737957 + (TG)n Simple_repeat Simple_repeat 2 100 0 187 246 82 0 chr15 46958662 46958723 -38737031 + L2 LINE L2 3122 3187 -85 203 234 0 0 chr15 46958771 46958818 -38736936 - L2 LINE L2 -5 3267 3221 588 220 135 15 chr15 46959019 46959140 -38736614 + MIR SINE MIR 23 128 -134 201 74 0 0 chr15 46959140 46959167 -38736587 + (CCA)n Simple_repeat Simple_repeat 3 29 0 588 220 135 15 chr15 46959167 46959245 -38736509 + MIR SINE MIR 128 246 -16 564 248 28 7 chr15 46959655 46959800 -38735954 + MER5B DNA MER1_type 1 148 -30 975 101 0 22 chr15 46959812 46959951 -38735803 - AluJo SINE Alu -176 136 1 272 206 32 0 chr15 46961087 46961150 -38734604 - MIR SINE MIR -101 107 43 659 307 106 42 chr15 46961640 46962446 -38733308 - L2 LINE L2 -16 3256 2368 1873 134 34 3 chr15 46962446 46962738 -38733016 + AluSx SINE Alu 1 301 -11 659 307 106 42 chr15 46962738 46962852 -38732902 - L2 LINE L2 -904 2368 2263 228 354 28 28 chr15 46963554 46963698 -38732056 + L2 LINE L2 2917 3060 -212 232 179 75 45 chr15 46964618 46964685 -38731069 + MIR3 SINE MIR 110 178 -30 333 201 254 15 chr15 46965722 46965790 -38729964 - MER5A DNA MER1_type 0 189 138 198 0 0 0 chr15 46965790 46965812 -38729942 + (CCCCAG)n Simple_repeat Simple_repeat 3 24 0 333 201 254 15 chr15 46965812 46965877 -38729877 - MER5A DNA MER1_type -51 138 24 217 272 1 37 chr15 46966828 46966907 -38728847 + GA-rich Low_complexity Low_complexity 4 58 0 413 255 0 10 chr15 46968439 46968537 -38727217 + MER5B DNA MER1_type 1 97 -81 313 303 262 0 chr15 46968558 46968703 -38727051 - MER5A DNA MER1_type 0 189 7 247 59 0 0 chr15 46968711 46968745 -38727009 + MER5B DNA MER1_type 129 162 -16 193 327 58 39 chr15 46968950 46969054 -38726700 + MIR SINE MIR 7 112 -150 797 168 30 12 chr15 46969141 46969308 -38726446 - MER5B DNA MER1_type -5 173 4 472 301 27 45 chr15 46971331 46971620 -38724134 - L1ME4a LINE L1 -102 6019 5735 1713 165 7 11 chr15 46971620 46971905 -38723849 - AluJo SINE Alu -19 293 10 472 301 27 45 chr15 46971905 46971947 -38723807 - L1ME4a LINE L1 -386 5735 5694 421 337 103 27 chr15 46972328 46972737 -38723017 + L2 LINE L2 2830 3269 -3 259 278 79 81 chr15 46972774 46972993 -38722761 - MIR3 SINE MIR -37 225 5 250 361 0 37 chr15 46973732 46973840 -38721914 + MIR3 SINE MIR 51 154 -54 265 250 0 0 chr15 46975280 46975336 -38720418 + (TG)n Simple_repeat Simple_repeat 2 57 0 346 290 136 13 chr15 46976804 46976959 -38718795 + L2 LINE L2 3072 3245 -27 262 296 25 0 chr15 46977777 46977858 -38717896 - L2 LINE L2 -2 3270 3188 491 320 79 63 chr15 46978609 46979050 -38716704 - L2 LINE L2 -1 3271 2824 388 203 23 0 chr15 46979941 46980041 -38715713 - MIR SINE MIR -65 143 51 812 201 126 25 chr15 46981215 46981414 -38714340 + MER20 DNA MER1_type 1 219 0 369 173 118 55 chr15 46981414 46981511 -38714243 + MIR SINE MIR 9 117 -145 387 0 0 0 chr15 46981511 46981554 -38714200 + (TC)n Simple_repeat Simple_repeat 2 44 0 369 173 118 55 chr15 46981554 46981583 -38714171 + MIR SINE MIR 117 143 -119 354 280 45 23 chr15 46983541 46983673 -38712081 - L3 LINE CR1 -29 1548 1414 328 333 47 27 chr15 46983678 46983828 -38711926 - L3 LINE CR1 -1235 342 190 216 0 0 0 chr15 46984479 46984503 -38711251 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 218 284 121 125 chr15 46984871 46985103 -38710651 + L2 LINE L2 3041 3271 -1 248 323 0 65 chr15 46986229 46986322 -38709432 + MIR SINE MIR 95 181 -81 294 125 0 0 chr15 46986425 46986473 -38709281 + (CA)n Simple_repeat Simple_repeat 2 49 0 631 316 74 19 chr15 46987762 46988085 -38707669 + MARNA DNA Mariner 242 582 -4 310 159 63 0 chr15 46988402 46988465 -38707289 - MER53 DNA DNA 0 189 123 301 333 40 8 chr15 46988503 46988641 -38707113 + MIR SINE MIR 36 176 -55 1845 179 0 17 chr15 46988700 46989001 -38706753 - AluJb SINE Alu -16 296 1 229 196 0 54 chr15 46990251 46990307 -38705447 - MER5B DNA MER1_type 0 178 126 2152 103 7 0 chr15 46990312 46990634 -38705120 + AluSx SINE Alu 1 324 0 1240 279 92 42 chr15 46990741 46990890 -38704864 - L1M4 LINE L1 -1870 4276 4136 1958 145 0 0 chr15 46990890 46991194 -38704560 - AluJo SINE Alu 0 304 1 1240 279 92 42 chr15 46991194 46991710 -38704044 - L1M4 LINE L1 -2010 4136 3577 419 233 0 0 chr15 46991727 46991817 -38703937 + Tigger5 DNA MER2_type 27 116 -2207 * 430 147 0 0 chr15 46991811 46991886 -38703868 + Tigger5 DNA MER2_type 2154 2228 -95 2384 71 0 17 chr15 46991940 46992236 -38703518 - AluSc SINE Alu -8 301 11 612 248 131 42 chr15 46992593 46992807 -38702947 + MIR SINE MIR 11 243 -19 267 319 125 38 chr15 46992854 46993014 -38702740 - MIR SINE MIR -34 228 55 189 0 0 0 chr15 46993035 46993056 -38702698 + (T)n Simple_repeat Simple_repeat 1 21 0 307 230 113 73 chr15 46993175 46993379 -38702375 + L1MC5 LINE L1 7566 7777 -184 204 182 52 13 chr15 46993389 46993466 -38702288 + (TATAA)n Simple_repeat Simple_repeat 4 83 0 5744 28 3 1 chr15 46993472 46994194 -38701560 + L1P LINE L1 1829 2551 -3595 217 178 44 33 chr15 46994195 46994285 -38701469 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 2511 229 57 33 chr15 46994423 46994635 -38701119 + L1M4 LINE L1 4464 4669 -1477 5582 99 39 9 chr15 46994635 46995509 -38700245 + L1PA16 LINE L1 5263 6166 0 2511 229 57 33 chr15 46995509 46996086 -38699668 + L1M4 LINE L1 4669 5272 -874 369 39 136 0 chr15 46996086 46996241 -38699513 + (TA)n Simple_repeat Simple_repeat 1 176 0 * 479 64 50 68 chr15 46996232 46996502 -38699252 + (TATAA)n Simple_repeat Simple_repeat 1 265 0 276 240 20 80 chr15 46997704 46997804 -38697950 + MIR SINE MIR 150 243 -19 722 252 128 31 chr15 46997880 46998478 -38697276 - L2 LINE L2 -5 3308 2639 183 184 0 0 chr15 46998682 46998720 -38697034 + (TG)n Simple_repeat Simple_repeat 1 38 0 255 191 0 0 chr15 46998721 46998768 -38696986 + MER4-int LTR ERV1 1111 1157 -5441 221 286 0 0 chr15 46999047 46999103 -38696651 + A-rich Low_complexity Low_complexity 1 56 0 189 121 0 0 chr15 46999406 46999439 -38696315 + (TC)n Simple_repeat Simple_repeat 1 33 0 411 338 40 11 chr15 46999812 47000031 -38695723 - MIR SINE MIR -12 250 18 638 269 6 0 chr15 47000521 47000677 -38695077 + MIR3 SINE MIR 30 186 -22 203 133 0 0 chr15 47001027 47001057 -38694697 + (TGG)n Simple_repeat Simple_repeat 1 30 0 377 304 12 36 chr15 47001851 47002019 -38693735 + GA-rich Low_complexity Low_complexity 5 168 0 1027 153 62 0 chr15 47002220 47002396 -38693358 + MER5A DNA MER1_type 3 189 0 1075 272 84 34 chr15 47002974 47003491 -38692263 + L2 LINE L2 2769 3313 0 356 344 69 28 chr15 47003528 47003918 -38691836 + L2 LINE L2 2571 2976 -338 254 330 195 0 chr15 47004344 47004456 -38691298 + MIR SINE MIR 35 165 -62 237 333 59 37 chr15 47005598 47005733 -38690021 - MIR SINE MIR -74 188 51 224 217 0 22 chr15 47007025 47007071 -38688683 - L2 LINE L2 -213 3059 3015 1408 306 152 42 chr15 47007109 47008869 -38686885 + L1MEc LINE L1 92 2045 -4351 811 238 10 0 chr15 47008860 47009066 -38686688 + L1MEc LINE L1 3356 3563 -2652 * 1927 221 85 5 chr15 47009098 47009760 -38685994 + L1MEc LINE L1 2840 3554 -2661 679 68 0 0 chr15 47009768 47009856 -38685898 + L1P3 LINE L1 326 413 -6048 * 3438 124 32 52 chr15 47009843 47010519 -38685235 + L1P3 LINE L1 1137 1808 -4653 1616 75 14 0 chr15 47010519 47010731 -38685023 + L1PA6 LINE L1 5938 6152 -2 2077 256 59 39 chr15 47010735 47011092 -38684662 + L1MEc LINE L1 3544 3892 -2323 302 0 0 26 chr15 47011092 47011131 -38684623 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 2077 256 59 39 chr15 47011131 47011719 -38684035 + L1MEc LINE L1 3892 4508 -1707 257 155 54 0 chr15 47011719 47011848 -38683906 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 268 312 65 39 chr15 47012290 47012444 -38683310 + L2 LINE L2 3151 3308 -5 214 325 114 0 chr15 47013041 47013164 -38682590 - MIR3 SINE MIR -63 145 9 410 200 0 0 chr15 47013281 47013356 -38682398 + MIR3 SINE MIR 81 155 -53 388 288 133 58 chr15 47013357 47013666 -38682088 - L2 LINE L2 -3 3269 2938 196 69 35 0 chr15 47013737 47013766 -38681988 - L2 LINE L2 -84 3229 3200 337 320 17 17 chr15 47014089 47014267 -38681487 - MER5B DNA MER1_type 0 178 1 207 176 0 0 chr15 47014396 47014430 -38681324 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 348 199 186 83 chr15 47014442 47014527 -38681227 - MIR SINE MIR -24 238 163 2343 108 0 0 chr15 47014527 47014823 -38680931 - AluSx SINE Alu -16 296 1 348 199 186 83 chr15 47014823 47014893 -38680861 - MIR SINE MIR -99 163 67 1774 97 0 0 chr15 47015957 47016184 -38679570 + AluY SINE Alu 1 227 -84 2124 113 3 7 chr15 47016945 47017247 -38678507 - AluSx SINE Alu -11 301 1 210 176 235 0 chr15 47017247 47017298 -38678456 + MER5B DNA MER1_type 115 177 -1 687 266 145 36 chr15 47018493 47018921 -38676833 + L2 LINE L2 2681 3189 -124 189 0 0 0 chr15 47018921 47018942 -38676812 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 687 266 145 36 chr15 47018942 47019060 -38676694 + L2 LINE L2 3189 3293 -20 241 279 19 39 chr15 47019104 47019208 -38676546 + L2 LINE L2 2657 2758 -556 2075 152 3 0 chr15 47020191 47020501 -38675253 - AluJo SINE Alu -1 311 1 379 240 33 100 chr15 47020747 47020845 -38674909 + MARNA DNA Mariner 430 517 -69 2018 116 3 31 chr15 47020845 47021158 -38674596 - AluSx SINE Alu 0 305 1 379 240 33 100 chr15 47021158 47021208 -38674546 + MARNA DNA Mariner 517 569 -17 1366 252 110 40 chr15 47021303 47021859 -38673895 + MLT1G1 LTR MaLR 1 595 0 725 361 98 13 chr15 47022532 47022983 -38672771 - L3 LINE CR1 -1 1576 1088 592 283 156 0 chr15 47023745 47023957 -38671797 + MIR SINE MIR 5 249 -13 26 0 0 0 chr15 47023978 47024004 -38671750 + AT_rich Low_complexity Low_complexity 1 26 0 2223 131 0 0 chr15 47024118 47024430 -38671324 + AluSx SINE Alu 1 312 0 305 278 46 28 chr15 47024939 47025047 -38670707 - L2 LINE L2 -10 3262 3153 189 0 0 0 chr15 47025057 47025078 -38670676 + (TTTTTA)n Simple_repeat Simple_repeat 1 21 0 181 229 104 0 chr15 47025183 47025231 -38670523 - MER5B DNA MER1_type -4 174 122 222 214 0 0 chr15 47025231 47025273 -38670481 + (CA)n Simple_repeat Simple_repeat 2 43 0 376 188 106 12 chr15 47025942 47026027 -38669727 + MER91C DNA MER1_type 25 117 -23 232 324 56 9 chr15 47026174 47026282 -38669472 - MIR3 SINE MIR -83 125 13 235 294 98 0 chr15 47026583 47026675 -38669079 - L3b LINE CR1 -196 1387 1287 741 131 48 10 chr15 47027279 47027793 -38667961 + (TGGA)n Simple_repeat Simple_repeat 1 533 0 265 248 16 0 chr15 47027813 47027942 -38667812 + (TGGA)n Simple_repeat Simple_repeat 3 133 0 496 213 80 53 chr15 47028687 47028837 -38666917 + L2 LINE L2 3160 3313 0 314 259 170 18 chr15 47029737 47029849 -38665905 - MIR3 SINE MIR -73 135 7 225 0 0 0 chr15 47030435 47030460 -38665294 + (TG)n Simple_repeat Simple_repeat 1 25 0 208 95 71 24 chr15 47030571 47030613 -38665141 + T-rich Low_complexity Low_complexity 1 44 0 641 189 0 0 chr15 47030624 47030730 -38665024 - FRAM SINE Alu -12 164 59 423 268 14 58 chr15 47031170 47031308 -38664446 - MIR SINE MIR -110 152 21 627 302 173 32 chr15 47032207 47032617 -38663137 + L2 LINE L2 2832 3299 -14 540 327 0 12 chr15 47032625 47032793 -38662961 - MIR3 SINE MIR -21 187 22 206 289 0 0 chr15 47033322 47033374 -38662380 + (CA)n Simple_repeat Simple_repeat 2 53 0 511 247 189 51 chr15 47033483 47033721 -38662033 + MIR SINE MIR 2 262 0 450 245 35 30 chr15 47033797 47033985 -38661769 + MIR3 SINE MIR 8 190 -61 197 356 9 35 chr15 47034469 47034584 -38661170 - L2 LINE L2 -235 3037 2926 1093 241 142 13 chr15 47034720 47035126 -38660628 + MLT1D LTR MaLR 45 505 0 195 162 0 0 chr15 47036088 47036125 -38659629 + GA-rich Low_complexity Low_complexity 1 37 0 1836 144 0 16 chr15 47036324 47036629 -38659125 + AluSx SINE Alu 5 304 -8 277 256 114 0 chr15 47036890 47036992 -38658762 - MIR SINE MIR -65 143 41 192 279 0 16 chr15 47038011 47038072 -38657682 + L2 LINE L2 3005 3064 -208 756 325 82 32 chr15 47038472 47038909 -38656845 + MLT1K LTR MaLR 122 580 -8 341 289 113 0 chr15 47039270 47039412 -38656342 - MIR3 SINE MIR -18 190 33 1141 177 17 26 chr15 47040643 47040875 -38654879 + MLT2D LTR ERVL 3 232 -182 544 146 27 27 chr15 47040875 47040985 -38654769 + MER5A DNA MER1_type 77 186 -3 294 344 54 45 chr15 47041231 47041452 -38654302 + L2 LINE L2 3085 3307 -6 209 269 15 15 chr15 47041592 47041659 -38654095 + MIR SINE MIR 94 160 -102 433 273 33 8 chr15 47041689 47041810 -38653944 - MER5A DNA MER1_type 0 189 66 2192 90 3 7 chr15 47042165 47042465 -38653289 - AluSx SINE Alu -13 299 1 1098 294 127 8 chr15 47042691 47043062 -38652692 + MER115 DNA AcHobo 42 456 -237 292 222 0 0 chr15 47043056 47043110 -38652644 + Zaphod DNA AcHobo 3978 4031 0 * 1647 168 7 0 chr15 47043256 47043558 -38652196 + AluJo SINE Alu 1 304 0 208 321 113 0 chr15 47043895 47044001 -38651753 - MIR SINE MIR -82 180 63 2157 139 33 6 chr15 47044499 47044859 -38650895 + MSTB LTR MaLR 1 370 -56 1157 205 0 13 chr15 47044862 47045091 -38650663 - AluSg/x SINE Alu 0 312 87 327 157 0 29 chr15 47045091 47045161 -38650593 + MSTB LTR MaLR 359 426 0 279 294 8 34 chr15 47045276 47045414 -38650340 + CT-rich Low_complexity Low_complexity 1 134 0 316 299 44 36 chr15 47045801 47045938 -38649816 - MIR3 SINE MIR -34 174 37 224 294 32 56 chr15 47046103 47046229 -38649525 - MIR SINE MIR -56 206 84 554 321 27 0 chr15 47046504 47046688 -38649066 + MER117 DNA MER1_type 2 190 -7 348 294 95 90 chr15 47047499 47047877 -38647877 + L2 LINE L2 2885 3264 -49 546 296 31 43 chr15 47048207 47048455 -38647299 + MIR SINE MIR 6 256 -6 238 281 137 22 chr15 47048477 47048616 -38647138 + L2 LINE L2 2910 3064 -208 639 239 92 9 chr15 47049073 47049293 -38646461 - MIR SINE MIR 0 262 28 407 214 19 19 chr15 47050947 47051050 -38644704 - MIR SINE MIR -127 135 33 721 239 184 94 chr15 47051051 47051541 -38644213 + MLT1H LTR MaLR 14 547 -2 2258 110 0 7 chr15 47052063 47052372 -38643382 - AluSx SINE Alu -5 307 1 234 246 18 0 chr15 47052641 47052698 -38643056 - MIR SINE MIR -70 138 81 518 246 23 15 chr15 47052923 47053053 -38642701 + MIR SINE MIR 18 148 -60 482 275 144 0 chr15 47053848 47054008 -38641746 + MIR3 SINE MIR 22 204 -4 235 194 93 56 chr15 47055610 47055718 -38640036 + L3 LINE CR1 1355 1466 -111 1803 131 38 3 chr15 47056039 47056329 -38639425 + AluSx SINE Alu 1 300 -12 236 213 125 12 chr15 47056422 47056502 -38639252 - FRAM SINE Alu -9 157 69 1260 322 121 17 chr15 47056522 47057397 -38638357 + L2 LINE L2 2248 3221 -92 718 149 113 60 chr15 47057400 47057568 -38638186 - MER63A DNA MER1_type -5 205 29 337 253 48 0 chr15 47057574 47057657 -38638097 + L2 LINE L2 3180 3266 -6 386 291 33 13 chr15 47057758 47057909 -38637845 + MIR3 SINE MIR 23 176 -32 240 213 315 28 chr15 47057972 47058080 -38637674 - MER91B DNA MER1_type -51 139 1 297 224 106 12 chr15 47058663 47058748 -38637006 + L3 LINE CR1 1400 1492 -85 292 280 16 35 chr15 47059033 47059137 -38636617 + MIR SINE MIR 21 128 -80 * 371 222 11 11 chr15 47059130 47059220 -38636534 + MIR SINE MIR 27 116 -146 617 284 34 62 chr15 47060014 47060335 -38635419 - L2 LINE L2 0 3313 3002 850 245 136 22 chr15 47060467 47060904 -38634850 - L2 LINE L2 -225 3088 2602 910 295 80 61 chr15 47062427 47063061 -38632693 - L2 LINE L2 -1 3271 2634 381 265 49 0 chr15 47063598 47063700 -38632054 + MIR3 SINE MIR 11 117 -91 344 313 78 6 chr15 47063748 47063914 -38631840 - MER5B DNA MER1_type 0 178 1 221 319 77 11 chr15 47064357 47064448 -38631306 + L2 LINE L2 3171 3267 -5 1011 203 6 0 chr15 47064535 47064712 -38631042 + MER45A DNA AcHobo 1 178 0 1379 126 5 0 chr15 47066083 47066281 -38629473 + AluSx SINE Alu 26 224 -88 243 248 40 64 chr15 47116466 47116591 -38579163 + L2 LINE L2 2970 3091 -181 598 329 56 4 chr15 47116904 47117138 -38578616 - MIR SINE MIR 0 262 17 246 289 112 84 chr15 47119602 47119851 -38575903 + L2 LINE L2 3029 3284 -29 209 316 41 20 chr15 47119887 47119985 -38575769 - L2 LINE L2 -181 3091 2992 252 0 0 0 chr15 47120127 47120155 -38575599 + (TG)n Simple_repeat Simple_repeat 2 29 0 255 257 28 73 chr15 47120462 47120571 -38575183 + MLT1K LTR MaLR 447 550 -38 3040 140 42 98 chr15 47121310 47121976 -38573778 - L1MB5 LINE L1 -19 6155 5527 890 270 151 59 chr15 47122081 47122604 -38573150 - MLT1K LTR MaLR 0 588 18 2085 113 0 26 chr15 47122941 47123113 -38572641 - AluSx SINE Alu -9 303 141 210 37 0 0 chr15 47123113 47123140 -38572614 + (TG)n Simple_repeat Simple_repeat 2 28 0 2085 113 0 26 chr15 47123140 47123278 -38572476 - AluSx SINE Alu -171 141 1 545 250 9 18 chr15 47123390 47123502 -38572252 + MER81 DNA DNA 3 113 -1 237 280 129 21 chr15 47124856 47124949 -38570805 - L2 LINE L2 -37 3235 3133 597 284 151 5 chr15 47124964 47125182 -38570572 - MIR SINE MIR 0 262 13 390 159 0 0 chr15 47125671 47125740 -38570014 + (CA)n Simple_repeat Simple_repeat 2 70 0 239 278 130 9 chr15 47126631 47126746 -38569008 - MIR SINE MIR -4 258 130 1237 239 71 12 chr15 47126869 47127191 -38568563 + LTR16C LTR ERVL 151 491 0 302 261 0 0 chr15 47127199 47127264 -38568490 - MIR SINE MIR -148 114 50 323 280 168 8 chr15 47128507 47128632 -38567122 + MIR SINE MIR 8 152 -110 851 232 62 22 chr15 47128639 47128863 -38566891 - MIR SINE MIR -21 241 9 362 213 43 43 chr15 47128868 47128962 -38566792 + MIR SINE MIR 169 262 0 850 269 45 5 chr15 47129701 47129902 -38565852 + MIR SINE MIR 30 238 -24 822 258 70 30 chr15 47129951 47130323 -38565431 - L1MEc LINE L1 -3615 2600 2214 382 333 99 42 chr15 47130344 47130698 -38565056 - L1MEc LINE L1 -4164 2232 1859 979 311 54 28 chr15 47130700 47131462 -38564292 - L1MEc LINE L1 -4579 1817 1036 233 149 0 0 chr15 47131600 47131647 -38564107 - LTR66 LTR ERVL -170 440 394 180 111 0 0 chr15 47131647 47131674 -38564080 + (TA)n Simple_repeat Simple_repeat 1 27 0 260 212 0 91 chr15 47131675 47131774 -38563980 - L1MC4 LINE L1 -1339 6703 6614 * 267 247 59 0 chr15 47131697 47131782 -38563972 + L1MC4 LINE L1 6614 6703 -1339 406 364 45 59 chr15 47132036 47132410 -38563344 - L1MEc LINE L1 -5748 457 89 304 269 172 15 chr15 47132581 47132715 -38563039 - L2 LINE L2 0 3313 3159 291 255 19 19 chr15 47132812 47132918 -38562836 - MLT1L LTR MaLR -4 611 506 806 256 67 52 chr15 47133041 47133310 -38562444 - MLT1L LTR MaLR -335 280 8 437 298 74 0 chr15 47133474 47133595 -38562159 - MIR SINE MIR -116 146 17 216 132 53 0 chr15 47133638 47133676 -38562078 - MIR SINE MIR -66 142 103 219 310 133 18 chr15 47133687 47133800 -38561954 - L2 LINE L2 -1 3271 3146 724 288 30 42 chr15 47133825 47133925 -38561829 + MIR SINE MIR 2 102 -160 2990 179 20 0 chr15 47133925 47134432 -38561322 - LTR53 LTR ERVL 0 519 3 724 288 30 42 chr15 47134432 47134567 -38561187 + MIR SINE MIR 102 234 -28 605 152 0 0 chr15 47134675 47134774 -38560980 - L1PA16 LINE L1 -19 6147 6049 300 245 311 0 chr15 47134912 47135018 -38560736 - L2 LINE L2 -1 3271 3133 392 250 94 23 chr15 47135287 47135415 -38560339 + MIR3 SINE MIR 49 185 -23 2221 131 0 3 chr15 47135429 47135742 -38560012 - AluSx SINE Alu 0 312 1 218 228 18 0 chr15 47136600 47136657 -38559097 + MIR SINE MIR 57 114 -148 330 316 31 0 chr15 47136699 47136797 -38558957 + MIR SINE MIR 13 113 -149 781 293 123 58 chr15 47137529 47137938 -38557816 + L1ME3A LINE L1 256 637 -5735 198 0 0 0 chr15 47137938 47137960 -38557794 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 781 293 123 58 chr15 47137960 47138548 -38557206 + L1ME3A LINE L1 637 1318 -5054 14144 187 39 18 chr15 47138593 47142495 -38553259 + L1MA9 LINE L1 2030 6042 -506 420 71 0 0 chr15 47142495 47142551 -38553203 + (TG)n Simple_repeat Simple_repeat 1 56 0 14144 187 39 18 chr15 47142551 47143067 -38552687 + L1MA9 LINE L1 6042 6546 -2 1040 254 9 29 chr15 47143076 47143419 -38552335 + L1ME3A LINE L1 4074 4409 -1973 2388 255 72 25 chr15 47143769 47144829 -38550925 + L1ME3A LINE L1 4560 5678 -720 1860 204 43 21 chr15 47144826 47145553 -38550201 + L1MB7 LINE L1 4945 5693 -491 * 2071 224 100 26 chr15 47145572 47146173 -38549581 + L1ME3A LINE L1 5758 6406 0 * 2089 255 85 17 chr15 47146155 47147632 -38548122 + L1ME3A LINE L1 4351 5924 -246 1799 181 6 6 chr15 47147737 47148074 -38547680 + L1MB7 LINE L1 5829 6165 -19 1839 148 0 14 chr15 47148125 47148416 -38547338 - AluJb SINE Alu -25 287 1 211 154 0 77 chr15 47148658 47148710 -38547044 + MIR3 SINE MIR 134 181 -27 307 268 10 31 chr15 47149234 47149331 -38546423 - L2 LINE L2 -1 3312 3218 204 194 153 14 chr15 47149903 47149975 -38545779 + MIR SINE MIR 180 261 -1 331 333 19 31 chr15 47150403 47150562 -38545192 + MIR3 SINE MIR 20 176 -32 221 343 13 0 chr15 47150852 47150955 -38544799 + MIR SINE MIR 30 134 -74 396 228 87 39 chr15 47151055 47151182 -38544572 - MIR SINE MIR -73 189 57 364 327 87 62 chr15 47152195 47152864 -38542890 + L2 LINE L2 2577 3259 -13 186 286 38 38 chr15 47153077 47153182 -38542572 - L3 LINE CR1 -36 1541 1437 678 140 0 0 chr15 47153289 47153389 -38542365 + AluJ/FLAM SINE Alu 1 100 -212 378 0 0 0 chr15 47153407 47153449 -38542305 + (TG)n Simple_repeat Simple_repeat 2 43 0 233 221 0 44 chr15 47153555 47153623 -38542131 + Charlie3 DNA MER1_type 994 1058 -1652 288 211 0 0 chr15 47154189 47154246 -38541508 - L3 LINE CR1 -189 1388 1332 322 294 87 0 chr15 47154570 47154696 -38541058 + MER5A DNA MER1_type 50 186 -3 466 183 122 0 chr15 47155031 47155146 -38540608 - L2 LINE L2 -9 3304 3176 1920 110 35 17 chr15 47155226 47155516 -38540238 + AluSq SINE Alu 1 295 -18 2391 95 0 0 chr15 47155522 47155827 -38539927 + AluSg SINE Alu 2 306 -4 213 308 0 0 chr15 47156370 47156448 -38539306 + (CA)n Simple_repeat Simple_repeat 1 78 0 280 317 67 0 chr15 47156874 47156994 -38538760 - L2 LINE L2 -1 3312 3185 250 301 48 10 chr15 47157686 47157789 -38537965 + L2 LINE L2 3160 3266 -6 232 260 41 14 chr15 47157977 47158050 -38537704 + MER69 DNA AcHobo 1 75 -1151 2082 178 25 5 chr15 47158260 47158654 -38537100 + MER57A LTR ERV1 2 403 0 994 195 96 64 chr15 47158759 47159103 -38536651 + MER69 DNA AcHobo 2085 2439 -87 1221 152 5 0 chr15 47159103 47159294 -38536460 + AluJb SINE Alu 112 303 -9 282 139 26 140 chr15 47159305 47159422 -38536332 + MER69 DNA AcHobo 68 2522 -4 227 286 0 0 chr15 47159636 47159692 -38536062 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 598 230 107 104 chr15 47159783 47160091 -38535663 - L1ME2 LINE L1 -271 5893 5582 1656 162 72 7 chr15 47160091 47160381 -38535373 - AluJb SINE Alu -3 309 1 598 230 107 104 chr15 47160381 47160455 -38535299 - L1ME2 LINE L1 -582 5582 5510 * 3513 239 67 107 chr15 47160441 47161943 -38533811 + L1MC4a LINE L1 5795 7222 -586 2294 114 0 0 chr15 47161943 47162241 -38533513 - AluSq SINE Alu -15 298 1 3513 239 67 107 chr15 47162241 47162449 -38533305 + L1MC4a LINE L1 7222 7437 -371 505 224 7 7 chr15 47162454 47162606 -38533148 + CT-rich Low_complexity Low_complexity 3 154 0 317 292 40 0 chr15 47162618 47162820 -38532934 - L1M4 LINE L1 -2890 3256 3047 443 195 26 18 chr15 47162911 47163024 -38532730 + L1MD1 LINE L1 3477 3590 -2556 4823 173 68 16 chr15 47163024 47163529 -38532225 + L1MD1 LINE L1 4619 5097 -1145 1946 185 100 0 chr15 47163529 47163918 -38531836 + MSTA LTR MaLR 1 428 0 4823 173 68 16 chr15 47163918 47164931 -38530823 + L1MD1 LINE L1 5097 6214 -28 306 280 32 21 chr15 47165128 47165221 -38530533 + MIR SINE MIR 37 130 -132 365 319 38 19 chr15 47165223 47165383 -38530371 + MLT1K LTR MaLR 87 249 -339 256 269 0 13 chr15 47165608 47165686 -38530068 + MLT1K LTR MaLR 511 587 -1 416 246 28 43 chr15 47165740 47165951 -38529803 - LTR16A1 LTR ERVL -5 452 245 308 232 0 71 chr15 47166645 47166744 -38529010 - MIR3 SINE MIR 0 208 117 187 337 67 11 chr15 47166887 47166976 -38528778 - MIR SINE MIR -62 146 53 481 264 24 0 chr15 47167051 47167176 -38528578 + L2 LINE L2 3185 3312 -1 232 333 124 26 chr15 47167493 47167760 -38527994 + L2 LINE L2 2980 3272 0 1864 113 110 10 chr15 47168334 47168644 -38527110 + MER61A LTR ERV1 1 341 -2 203 322 69 11 chr15 47168681 47168768 -38526986 + L2 LINE L2 3142 3233 -39 746 289 134 17 chr15 47169031 47169388 -38526366 - MER115 DNA AcHobo -286 407 9 508 260 115 38 chr15 47169424 47169763 -38525991 + HAL1 LINE L1 2079 2443 -64 795 183 49 37 chr15 47169787 47169951 -38525803 + FRAM SINE Alu 1 166 0 1662 255 59 33 chr15 47170016 47170557 -38525197 - MLT1H1 LTR MaLR 0 555 1 24 77 0 0 chr15 47170589 47170641 -38525113 + AT_rich Low_complexity Low_complexity 1 52 0 427 328 25 5 chr15 47170667 47170865 -38524889 - L1M4 LINE L1 -1970 4176 3975 1771 202 0 0 chr15 47170865 47171356 -38524398 + AluJo SINE Alu 1 491 0 193 309 15 0 chr15 47172222 47172290 -38523464 + MIR3 SINE MIR 88 156 -52 274 253 0 42 chr15 47172599 47172694 -38523060 + MIR SINE MIR 9 99 -163 597 215 158 40 chr15 47172767 47173121 -38522633 - LTR33 LTR ERVL -125 396 1 283 291 0 0 chr15 47173127 47173206 -38522548 + MIR SINE MIR 109 187 -75 228 35 0 0 chr15 47173206 47173235 -38522519 + (TC)n Simple_repeat Simple_repeat 2 30 0 192 158 0 0 chr15 47173238 47173276 -38522478 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 246 62 0 0 chr15 47174543 47174575 -38521179 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 317 200 0 0 chr15 47174880 47174935 -38520819 - MLT1I LTR MaLR 0 409 355 318 235 0 78 chr15 47175167 47175269 -38520485 - MIR SINE MIR -72 136 43 308 255 10 61 chr15 47175369 47175404 -38520350 - L2 LINE L2 -1 3271 3236 2376 112 19 27 chr15 47175404 47175771 -38519983 - THE1B LTR MaLR 0 364 1 308 255 10 61 chr15 47175771 47175833 -38519921 - L2 LINE L2 -36 3236 3179 228 316 53 0 chr15 47176099 47176175 -38519579 + L2 LINE L2 3193 3272 0 216 257 139 20 chr15 47176211 47176312 -38519442 + MIR3 SINE MIR 93 205 -3 1496 166 50 22 chr15 47176755 47177032 -38518722 - AluJo SINE Alu -23 289 5 3365 133 14 7 chr15 47177150 47177712 -38518042 - L1MA4 LINE L1 -6 6294 5729 357 209 25 12 chr15 47177755 47177868 -38517886 - MIR SINE MIR -62 146 76 1449 178 48 7 chr15 47178285 47178577 -38517177 + L1MC3 LINE L1 7475 7778 -7 249 218 0 69 chr15 47179009 47179043 -38516711 - MER5C DNA MER1_type -2 322 287 2438 70 0 16 chr15 47179043 47179358 -38516396 - AluY SINE Alu -1 310 1 249 218 0 69 chr15 47179358 47179410 -38516344 - MER5C DNA MER1_type -37 287 242 349 273 10 20 chr15 47179467 47179566 -38516188 - MER5C DNA MER1_type -202 122 25 405 204 45 30 chr15 47179567 47179699 -38516055 - MIR SINE MIR -74 188 55 258 114 0 23 chr15 47180611 47180655 -38515099 - L2 LINE L2 -47 3225 3183 196 303 41 62 chr15 47181024 47181169 -38514585 + L2 LINE L2 2917 3058 -214 2124 148 146 28 chr15 47181354 47181819 -38513935 - MLT2B1 LTR ERVL 0 520 1 1298 229 36 13 chr15 47181865 47182249 -38513505 + HAL1 LINE L1 1829 2221 -286 415 154 23 17 chr15 47182346 47182448 -38513306 + L1MA8 LINE L1 5633 5730 -561 715 289 125 44 chr15 47182451 47182970 -38512784 - MER34B LTR ERV1 0 565 5 3014 158 39 4 chr15 47182974 47183512 -38512242 + L1MA8 LINE L1 5730 6286 -5 351 257 145 26 chr15 47183530 47183682 -38512072 + HAL1 LINE L1 2298 2467 -40 2004 137 32 0 chr15 47183692 47183976 -38511778 - AluSx SINE Alu -19 293 1 30 27 0 0 chr15 47184011 47184048 -38511706 + AT_rich Low_complexity Low_complexity 1 37 0 562 230 19 18 chr15 47184794 47185002 -38510752 - MIR SINE MIR -47 215 12 323 298 62 6 chr15 47185282 47185443 -38510311 + MIR SINE MIR 28 197 -65 2343 90 13 0 chr15 47185515 47185815 -38509939 - AluSx SINE Alu -8 304 1 228 358 73 0 chr15 47185848 47185957 -38509797 - MIR SINE MIR -60 148 32 1870 145 0 4 chr15 47186149 47186425 -38509329 + AluJb SINE Alu 1 275 -37 574 236 61 24 chr15 47186754 47186919 -38508835 - MLT1L LTR MaLR -344 271 101 261 338 0 43 chr15 47187123 47187316 -38508438 + C-rich Low_complexity Low_complexity 1 184 0 753 282 60 0 chr15 47189065 47189301 -38506453 - MIR SINE MIR -2 260 3 360 323 63 27 chr15 47189302 47189525 -38506229 + MIR SINE MIR 10 240 -22 266 264 208 40 chr15 47190221 47190543 -38505211 + MLT1K LTR MaLR 122 497 -91 524 291 78 0 chr15 47190553 47190732 -38505022 + MIR SINE MIR 16 208 -54 1279 223 140 43 chr15 47191643 47192136 -38503618 - MLT1F LTR MaLR -1 541 1 188 338 52 29 chr15 47192501 47192637 -38503117 - L2 LINE L2 -208 3064 2926 378 108 0 8 chr15 47193442 47193492 -38502262 + MLT2B1 LTR ERVL 2 48 -349 233 154 0 0 chr15 47193492 47193531 -38502223 - MSTD LTR MaLR 0 457 419 1611 138 37 62 chr15 47193540 47193865 -38501889 + MER4A LTR ERV1 30 346 -318 262 78 11 233 chr15 47193849 47193939 -38501815 + MER4A LTR ERV1 288 357 -307 * 716 152 281 22 chr15 47193911 47194135 -38501619 + MER4C LTR ERV1 176 457 -8 1067 228 100 17 chr15 47194168 47194457 -38501297 - MSTD LTR MaLR -83 313 1 1344 230 178 5 chr15 47194457 47194857 -38500897 + MLT2B2 LTR ERVL 47 515 0 2498 77 0 3 chr15 47194893 47195205 -38500549 + AluY SINE Alu 1 311 0 358 339 28 57 chr15 47196263 47196427 -38499327 - L2 LINE L2 -36 3236 3080 2068 199 39 24 chr15 47196427 47196885 -38498869 + MLT1C LTR MaLR 1 465 -2 358 339 28 57 chr15 47196885 47196968 -38498786 - L2 LINE L2 -192 3080 2996 2333 99 7 7 chr15 47196971 47197275 -38498479 + AluSx SINE Alu 6 309 -3 1605 127 0 0 chr15 47197275 47197494 -38498260 + AluSg/x SINE Alu 80 299 -11 220 271 107 53 chr15 47197804 47198029 -38497725 + L2 LINE L2 2990 3226 -87 373 315 114 36 chr15 47198378 47199130 -38496624 - L2 LINE L2 -939 2375 1565 2072 193 92 9 chr15 47199557 47200023 -38495731 + MLT1D LTR MaLR 1 505 0 1116 295 72 36 chr15 47200623 47201362 -38494392 - L1MCa LINE L1 -1709 5232 4468 273 266 124 9 chr15 47202040 47202153 -38493601 - HsTC2 DNA Tc2 -1772 126 1 192 125 0 0 chr15 47203260 47203292 -38492462 + (ATG)n Simple_repeat Simple_repeat 3 34 0 237 311 27 0 chr15 47203417 47203491 -38492263 - MIR SINE MIR -108 154 79 317 269 97 82 chr15 47203614 47203871 -38491883 - MIR SINE MIR 0 262 2 302 343 22 11 chr15 47205425 47205603 -38490151 + CT-rich Low_complexity Low_complexity 1 180 0 784 244 17 49 chr15 47206548 47206896 -38488858 - L1MCa LINE L1 -2836 4105 3769 * 2198 249 89 44 chr15 47206891 47207669 -38488085 - L1MCa LINE L1 -3067 3874 3133 392 213 0 0 chr15 47207669 47207749 -38488005 - MER116 DNA Mariner 0 80 1 2198 249 89 44 chr15 47207749 47207805 -38487949 - L1MCa LINE L1 -3808 3133 3081 2307 104 0 10 chr15 47207805 47208103 -38487651 + AluSx SINE Alu 1 295 -17 2198 249 89 44 chr15 47208103 47208503 -38487251 - L1MCa LINE L1 -3860 3081 2609 404 244 38 31 chr15 47208594 47208741 -38487013 - L1MCa LINE L1 -855 2447 2071 543 130 170 0 chr15 47208789 47208889 -38486865 - AluJb SINE Alu 0 312 196 395 136 0 45 chr15 47208896 47208962 -38486792 + AluSq/x SINE Alu 69 131 -171 1162 126 11 47 chr15 47208962 47209152 -38486602 - AluJo SINE Alu -129 183 1 265 232 56 74 chr15 47209426 47209608 -38486146 - L1MCa LINE L1 -4869 2062 1769 1792 97 0 0 chr15 47209675 47209902 -38485852 - AluSg/x SINE Alu -5 307 81 231 250 106 69 chr15 47209985 47210173 -38485581 - L1MCa LINE L1 -4950 1473 1279 1909 165 0 19 chr15 47210413 47210729 -38485025 - AluJo SINE Alu -2 310 1 22 0 0 0 chr15 47211150 47211172 -38484582 + AT_rich Low_complexity Low_complexity 1 22 0 1911 168 20 0 chr15 47211176 47211473 -38484281 + AluJo SINE Alu 1 303 -9 21 36 0 0 chr15 47211576 47211604 -38484150 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 47212962 47212984 -38482770 + AT_rich Low_complexity Low_complexity 1 22 0 5425 207 65 66 chr15 47212992 47214063 -38481691 - L1ME1 LINE L1 0 6235 5164 1482 208 76 27 chr15 47214063 47214433 -38481321 + MLT1B LTR MaLR 1 388 -2 5425 207 65 66 chr15 47214433 47216111 -38479643 - L1ME1 LINE L1 -1071 5164 3494 2581 252 126 32 chr15 47216652 47217276 -38478478 - L1ME1 LINE L1 -2671 3544 2980 2276 76 0 7 chr15 47217276 47217564 -38478190 + AluY SINE Alu 1 286 -25 2581 252 126 32 chr15 47217564 47218400 -38477354 - L1ME1 LINE L1 -3235 2980 1919 2003 112 3 53 chr15 47218433 47218737 -38477017 + AluSq SINE Alu 1 289 -24 767 140 25 6 chr15 47218737 47218894 -38476860 + GA-rich Low_complexity Low_complexity 1 160 0 2690 260 53 23 chr15 47218920 47219970 -38475784 - L1ME1 LINE L1 -4547 1849 768 259 301 53 44 chr15 47220075 47220281 -38475473 - L1ME1 LINE L1 -5814 582 375 533 359 25 3 chr15 47220291 47220575 -38475179 - L1ME1 LINE L1 -6077 319 30 336 368 0 0 chr15 47221461 47221567 -38474187 + (CA)n Simple_repeat Simple_repeat 1 106 0 2292 129 30 30 chr15 47221959 47222323 -38473431 - THE1B LTR MaLR 0 364 1 520 283 24 85 chr15 47222524 47222771 -38472983 + MIR SINE MIR 31 262 0 1151 236 112 77 chr15 47223840 47224322 -38471432 + MLT1J LTR MaLR 1 499 -12 453 248 53 9 chr15 47224476 47224589 -38471165 + MLT2E LTR ERVL 32 149 -479 1073 154 46 113 chr15 47224639 47224721 -38471033 + MER58A DNA MER1_type 1 87 -2333 1834 96 23 0 chr15 47224721 47224982 -38470772 - L1PA10 LINE L1 0 6168 5902 1073 154 46 113 chr15 47224982 47225139 -38470615 + MER58A DNA MER1_type 87 224 0 1004 180 0 6 chr15 47226425 47226597 -38469157 - LTR41 LTR ERVL -602 171 1 1670 151 36 7 chr15 47226628 47226906 -38468848 + AluJb SINE Alu 4 289 -23 5232 179 56 14 chr15 47226920 47228012 -38467742 - Charlie1 DNA MER1_type -98 2663 1526 1765 175 0 16 chr15 47228210 47228513 -38467241 + AluJb SINE Alu 5 302 -10 2323 231 48 12 chr15 47228854 47229434 -38466320 - L1MEc LINE L1 -5758 638 38 365 152 165 13 chr15 47229771 47229850 -38465904 - MLT1I LTR MaLR 0 409 319 803 224 25 25 chr15 47229929 47230130 -38465624 - MLT1I LTR MaLR -205 204 4 289 238 24 24 chr15 47230463 47230547 -38465207 + MIR SINE MIR 67 150 -112 402 256 7 22 chr15 47231422 47231559 -38464195 + MIR SINE MIR 70 204 -58 777 286 16 25 chr15 47231774 47232019 -38463735 - HERVL LTR ERVL -1302 4352 4110 2511 53 7 0 chr15 47232031 47232332 -38463422 - AluY SINE Alu -8 303 1 305 47 23 0 chr15 47233924 47233967 -38461787 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 1162 58 0 7 chr15 47234762 47234900 -38460854 - AluYb8 SINE Alu -181 137 1 2265 108 0 0 chr15 47235147 47235434 -38460320 + AluSx SINE Alu 1 287 -25 250 277 42 60 chr15 47235462 47235628 -38460126 - L1ME LINE L1 -298 5866 5704 622 214 17 0 chr15 47235682 47235799 -38459955 + MER63A DNA MER1_type 90 208 -2 738 296 80 12 chr15 47235805 47236227 -38459527 - L1ME LINE L1 -481 5689 5221 466 261 84 0 chr15 47236335 47236477 -38459277 - L1ME4a LINE L1 -1 6120 5967 208 186 22 88 chr15 47236848 47236915 -38458839 + MIR SINE MIR 20 77 -131 2097 136 0 7 chr15 47236915 47237212 -38458542 + AluSx SINE Alu 1 326 0 280 0 0 0 chr15 47237212 47237243 -38458511 + (TAAA)n Simple_repeat Simple_repeat 2 172 0 208 186 22 88 chr15 47237243 47237280 -38458474 + MIR SINE MIR 77 115 -93 213 242 101 10 chr15 47237559 47237658 -38458096 + MIR3 SINE MIR 60 167 -41 431 310 70 6 chr15 47237666 47237837 -38457917 + MIR SINE MIR 35 216 -46 191 367 143 0 chr15 47238020 47238167 -38457587 - MIR3 SINE MIR -8 200 33 413 261 57 32 chr15 47239292 47239449 -38456305 - MIR3 SINE MIR -27 181 21 262 266 129 43 chr15 47240230 47240369 -38455385 - L2 LINE L2 -5 3267 3117 1828 209 115 9 chr15 47240457 47240893 -38454861 + MLT1D LTR MaLR 2 483 -22 619 301 85 26 chr15 47240896 47241311 -38454443 - L2 LINE L2 -223 3049 2596 512 316 35 53 chr15 47241856 47242084 -38453670 - MIR SINE MIR -8 254 31 192 226 0 65 chr15 47242125 47242187 -38453567 - MIR SINE MIR -115 93 36 261 374 61 7 chr15 47242588 47242735 -38453019 - MIR3 SINE MIR -49 159 5 218 290 10 49 chr15 47244744 47244826 -38450928 - MIR SINE MIR -75 133 45 472 196 335 0 chr15 47244884 47245042 -38450712 - MIR SINE MIR -19 243 33 1580 174 3 31 chr15 47245634 47245928 -38449826 - AluJb SINE Alu -20 292 7 385 294 74 12 chr15 47246045 47246208 -38449546 + MIR SINE MIR 35 207 -55 182 319 0 29 chr15 47246265 47246334 -38449420 - L2 LINE L2 -1 3312 3246 422 288 69 17 chr15 47247146 47247404 -38448350 - LTR16B LTR ERVL -3 447 115 1974 146 0 13 chr15 47247488 47247857 -38447897 - AluJo SINE Alu 0 365 1 572 166 22 7 chr15 47249751 47249890 -38445864 + MER53 DNA DNA 23 163 -26 2077 210 47 59 chr15 47249891 47249951 -38445803 + L1M4 LINE L1 2894 2953 -3193 2358 73 0 10 chr15 47249951 47250265 -38445489 + AluY SINE Alu 1 311 0 2077 210 47 59 chr15 47250265 47250464 -38445290 + L1M4 LINE L1 2953 3153 -2993 1886 164 10 7 chr15 47250464 47250774 -38444980 + AluJb SINE Alu 1 311 -1 2077 210 47 59 chr15 47250774 47251327 -38444427 + L1M4 LINE L1 3153 3697 -2449 364 248 128 66 chr15 47251334 47251560 -38444194 + MER97c DNA MER1_type? 168 407 -683 1595 167 7 33 chr15 47251564 47251870 -38443884 - AluJb SINE Alu -14 298 1 296 284 12 0 chr15 47251914 47251995 -38443759 + MER97c DNA MER1_type? 485 566 -524 26 30 0 0 chr15 47252557 47252590 -38443164 + AT_rich Low_complexity Low_complexity 1 33 0 198 233 0 0 chr15 47252597 47252657 -38443097 + (TA)n Simple_repeat Simple_repeat 2 61 0 36 23 0 0 chr15 47252769 47252812 -38442942 + AT_rich Low_complexity Low_complexity 1 43 0 294 194 86 43 chr15 47253388 47253481 -38442273 - MIR SINE MIR -46 216 120 637 283 13 6 chr15 47253512 47253671 -38442083 - MIR SINE MIR -91 171 12 481 278 8 8 chr15 47254276 47254402 -38441352 + MIR SINE MIR 112 237 -25 1047 270 51 81 chr15 47254441 47254970 -38440784 - MER34 LTR ERV1 -29 513 1 2094 104 0 0 chr15 47254998 47255301 -38440453 + AluSg1 SINE Alu 1 303 0 306 299 18 88 chr15 47255448 47255665 -38440089 + MIR SINE MIR 61 262 0 216 370 30 22 chr15 47255704 47255839 -38439915 - MIR3 SINE MIR -19 189 54 437 118 0 0 chr15 47255955 47256023 -38439731 - L1MC2 LINE L1 -11 6333 6266 1578 100 43 9 chr15 47256023 47256252 -38439502 + L1PA10 LINE L1 5928 6165 -3 5375 124 7 0 chr15 47256278 47257085 -38438669 - L1MC1 LINE L1 -55 6278 5466 245 154 39 0 chr15 47257086 47257138 -38438616 - MIR SINE MIR -65 143 90 316 342 33 0 chr15 47257383 47257503 -38438251 + MIR3 SINE MIR 2 125 -83 484 158 84 0 chr15 47257596 47257691 -38438063 - L1 LINE L1 -2419 3727 3625 880 117 31 0 chr15 47258068 47258196 -38437558 - FLAM_C SINE Alu 0 133 2 593 224 103 29 chr15 47259811 47259985 -38435769 - MER5A DNA MER1_type -2 187 1 313 247 0 0 chr15 47260218 47260295 -38435459 + (CA)n Simple_repeat Simple_repeat 1 77 0 211 270 16 0 chr15 47260508 47260612 -38435142 + GA-rich Low_complexity Low_complexity 1 105 0 254 287 65 125 chr15 47260962 47261241 -38434513 - L2 LINE L2 -46 3226 2965 405 316 7 0 chr15 47262063 47262202 -38433552 - L2 LINE L2 -223 3049 2910 377 274 44 22 chr15 47262364 47262499 -38433255 + LTR16C LTR ERVL 96 233 -258 1593 110 25 4 chr15 47262597 47262833 -38432921 - AluSg/x SINE Alu -4 308 68 319 271 12 36 chr15 47263205 47263371 -38432383 + (CACCC)n Simple_repeat Simple_repeat 3 164 0 459 141 0 0 chr15 47263569 47263647 -38432107 + AluS SINE Alu 232 309 0 261 352 19 9 chr15 47264196 47264301 -38431453 - L3b LINE CR1 -172 1411 1306 339 254 106 0 chr15 47264753 47264885 -38430869 + MIR SINE MIR 42 185 -62 2313 65 3 13 chr15 47264913 47265219 -38430535 + AluSg SINE Alu 1 303 -7 242 311 8 17 chr15 47266365 47266484 -38429270 + CT-rich Low_complexity Low_complexity 4 121 0 183 24 24 71 chr15 47266660 47266702 -38429052 + (CCG)n Simple_repeat Simple_repeat 3 42 0 24 53 0 0 chr15 47266754 47266792 -38428962 + GC_rich Low_complexity Low_complexity 1 38 0 308 318 15 15 chr15 47267483 47267615 -38428139 + MIR SINE MIR 16 147 -61 515 238 3 32 chr15 47268349 47268511 -38427243 - MIR3 SINE MIR -67 141 12 602 276 7 0 chr15 47268950 47269095 -38426659 + MIR3 SINE MIR 33 178 -30 502 285 108 16 chr15 47270734 47270920 -38424834 - MIR3 SINE MIR -4 204 2 364 255 64 0 chr15 47271471 47271565 -38424189 - L2 LINE L2 0 3272 3173 241 378 37 5 chr15 47272616 47272807 -38422947 - MIR3 SINE MIR -58 204 9 532 306 28 17 chr15 47272868 47273048 -38422706 - MIR SINE MIR -50 212 31 656 262 61 33 chr15 47273514 47273728 -38422026 + MIR SINE MIR 15 234 -28 189 233 75 42 chr15 47273840 47273960 -38421794 - L2 LINE L2 -236 3036 2913 631 318 56 5 chr15 47273967 47274181 -38421573 - MIR SINE MIR -18 244 20 423 0 0 0 chr15 47274522 47274569 -38421185 + (CA)n Simple_repeat Simple_repeat 2 48 0 458 146 260 0 chr15 47274594 47274690 -38421064 + FLAM_A SINE Alu 17 137 -5 579 277 16 56 chr15 47275109 47275351 -38420403 - MIR SINE MIR 0 262 28 373 299 126 17 chr15 47275379 47275553 -38420201 + MIR SINE MIR 14 206 -56 210 364 33 16 chr15 47275632 47275753 -38420001 - L3b LINE CR1 -174 1409 1287 309 317 76 7 chr15 47276939 47277084 -38418670 - MIR3 SINE MIR -3 205 51 217 252 101 0 chr15 47277880 47277977 -38417777 - MIR SINE MIR -61 147 51 333 317 69 87 chr15 47278438 47279021 -38416733 - L2 LINE L2 -4 3268 2701 286 218 40 40 chr15 47279338 47279439 -38416315 + MIR SINE MIR 17 117 -91 486 192 153 90 chr15 47279880 47280057 -38415697 + L1ME3 LINE L1 5974 6161 -1 230 161 161 0 chr15 47280303 47280359 -38415395 + MER5B DNA MER1_type 3 67 -111 1765 185 105 16 chr15 47280368 47280731 -38415023 - MSTD LTR MaLR 0 396 2 406 162 0 0 chr15 47280753 47280821 -38414933 + MER45A DNA AcHobo 67 134 -44 318 212 0 15 chr15 47280848 47280914 -38414840 + MER5B DNA MER1_type 69 133 -45 201 74 0 0 chr15 47281353 47281380 -38414374 + (GAGAA)n Simple_repeat Simple_repeat 5 31 0 2187 108 0 0 chr15 47282573 47282868 -38412886 - AluSx SINE Alu -17 295 1 497 186 31 54 chr15 47283389 47283518 -38412236 + L1ME1 LINE L1 6040 6165 -1 2246 107 3 0 chr15 47283774 47284084 -38411670 - AluSx SINE Alu -1 311 1 2319 90 3 0 chr15 47284098 47284409 -38411345 - AluSx SINE Alu 0 312 1 1796 146 17 3 chr15 47284870 47284988 -38410766 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr15 47284988 47285039 -38410715 + (CA)n Simple_repeat Simple_repeat 2 52 0 1796 146 17 3 chr15 47285039 47285214 -38410540 + AluJb SINE Alu 116 298 -14 356 317 60 22 chr15 47285326 47285509 -38410245 - MIR SINE MIR -58 204 15 1692 125 8 0 chr15 47286174 47286422 -38409332 + AluSq SINE Alu 61 310 -3 346 295 139 17 chr15 47286751 47286924 -38408830 - MIR SINE MIR -41 221 28 1728 144 0 11 chr15 47287666 47287929 -38407825 - AluJo SINE Alu -10 302 43 1231 90 0 0 chr15 47287929 47288084 -38407670 - AluSg/x SINE Alu -22 290 136 350 182 0 0 chr15 47288085 47288140 -38407614 - Alu SINE Alu -247 55 1 462 361 30 10 chr15 47288331 47288633 -38407121 + L1MC4a LINE L1 5630 5937 -1871 2480 73 3 10 chr15 47289307 47289620 -38406134 - AluY SINE Alu 0 311 1 2041 160 0 3 chr15 47289631 47289937 -38405817 - AluJo SINE Alu -5 307 3 469 283 126 24 chr15 47290001 47290248 -38405506 - L1ME LINE L1 -317 5804 5533 313 228 89 0 chr15 47290464 47290565 -38405189 + MIR3 SINE MIR 48 157 -51 237 294 109 17 chr15 47291273 47291392 -38404362 - L2 LINE L2 -23 3290 3161 267 203 98 89 chr15 47291753 47291876 -38403878 - L2 LINE L2 -11 3261 3138 598 271 71 46 chr15 47292895 47293135 -38402619 - MIR SINE MIR -3 259 14 183 114 0 0 chr15 47293207 47293242 -38402512 + (A)n Simple_repeat Simple_repeat 1 35 0 187 270 81 27 chr15 47293421 47293532 -38402222 - L2 LINE L2 -677 2637 2521 336 235 59 0 chr15 47293665 47293750 -38402004 + MARNA DNA Mariner 267 356 -230 225 366 114 39 chr15 47294720 47295001 -38400753 + L2 LINE L2 2965 3266 -6 222 216 0 0 chr15 47295833 47295884 -38399870 + L2 LINE L2 2999 3049 -223 204 288 12 62 chr15 47296774 47296854 -38398900 - L2 LINE L2 -11 3261 3186 410 310 58 50 chr15 47296939 47297339 -38398415 - L2 LINE L2 -6 3266 2864 874 220 83 77 chr15 47297373 47297736 -38398018 - MLT1A1 LTR MaLR 0 365 1 387 0 0 0 chr15 47297987 47298030 -38397724 + (CA)n Simple_repeat Simple_repeat 1 43 0 239 301 24 12 chr15 47298753 47298836 -38396918 + L2 LINE L2 3186 3269 -3 217 171 0 24 chr15 47298844 47298885 -38396869 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1335 156 125 42 chr15 47299084 47299444 -38396310 + MLT1B LTR MaLR 1 390 0 277 137 78 0 chr15 47299581 47299632 -38396122 + MLT1B LTR MaLR 336 390 0 329 275 0 22 chr15 47299765 47299898 -38395856 + MIR SINE MIR 19 246 -16 258 305 10 108 chr15 47300175 47300378 -38395376 + MARNA DNA Mariner 347 529 -57 2322 113 3 0 chr15 47300594 47300895 -38394859 + AluSg SINE Alu 1 302 -8 1246 272 40 11 chr15 47300999 47301378 -38394376 + L1ME4a LINE L1 5547 5936 -185 480 301 143 30 chr15 47301411 47301471 -38394283 - L2 LINE L2 -784 2530 2478 2357 96 0 10 chr15 47301471 47301783 -38393971 - AluSg SINE Alu -1 309 1 480 301 143 30 chr15 47301783 47302051 -38393703 - L2 LINE L2 -836 2478 2165 279 202 298 19 chr15 47302069 47302173 -38393581 + MER5B DNA MER1_type 22 154 -24 1937 197 72 4 chr15 47302863 47303246 -38392508 - MLT1G LTR MaLR -75 515 103 2075 163 0 0 chr15 47303295 47303595 -38392159 + AluJo SINE Alu 1 300 -12 371 242 60 7 chr15 47307008 47307157 -38388597 - L1ME4a LINE L1 -5 6116 5960 285 236 130 12 chr15 47307253 47307414 -38388340 + MER104 DNA Tc2 1 180 0 321 305 85 41 chr15 47307414 47307524 -38388230 - L1ME4a LINE L1 -282 5839 5735 2046 155 3 0 chr15 47307524 47307827 -38387927 - AluJo SINE Alu -8 304 1 321 305 85 41 chr15 47307827 47307962 -38387792 - L1ME4a LINE L1 -386 5735 5583 344 225 15 130 chr15 47308370 47308570 -38387184 + MIR3 SINE MIR 19 195 -13 387 228 158 31 chr15 47308899 47309026 -38386728 - MLT1J LTR MaLR -337 174 32 471 256 16 8 chr15 47309781 47309910 -38385844 + MER5A DNA MER1_type 9 138 -51 1553 191 31 55 chr15 47311258 47311641 -38384113 + MLT1A2 LTR MaLR 1 374 0 332 320 65 7 chr15 47311730 47311883 -38383871 - MIR SINE MIR -12 250 89 229 282 119 9 chr15 47312723 47312897 -38382857 - MIR SINE MIR -48 214 22 533 252 9 0 chr15 47313150 47313265 -38382489 + MIR SINE MIR 33 148 -60 243 191 0 0 chr15 47313267 47313330 -38382424 + (TG)n Simple_repeat Simple_repeat 1 63 0 480 315 110 37 chr15 47313696 47313810 -38381944 - L2 LINE L2 -4 3268 3164 443 239 171 40 chr15 47313810 47313872 -38381882 + MER112 DNA MER1_type 3 56 -200 216 97 0 0 chr15 47313872 47313903 -38381851 + (CA)n Simple_repeat Simple_repeat 2 32 0 443 239 171 40 chr15 47313903 47314062 -38381692 + MER112 DNA MER1_type 56 253 -3 480 315 110 37 chr15 47314062 47314328 -38381426 - L2 LINE L2 -108 3164 2860 * 620 251 22 5 chr15 47314308 47314536 -38381218 - MIR SINE MIR -31 231 43 184 373 7 28 chr15 47314622 47314764 -38380990 - L2 LINE L2 -527 2787 2649 263 219 0 24 chr15 47315412 47315494 -38380260 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 2443 99 0 0 chr15 47315662 47315964 -38379790 - AluSx SINE Alu -10 302 1 371 202 32 32 chr15 47316066 47316190 -38379564 - MER113 DNA MER1_type? -397 124 1 233 262 16 0 chr15 47316196 47316257 -38379497 - MIR3 SINE MIR -54 154 93 288 223 83 64 chr15 47316419 47316586 -38379168 - MIR SINE MIR -58 150 26 234 397 25 0 chr15 47316939 47317060 -38378694 - L2 LINE L2 -23 3249 3126 2153 117 16 0 chr15 47317241 47317548 -38378206 - AluSx SINE Alu 0 312 1 731 157 16 0 chr15 47317551 47317672 -38378082 - FLAM_A SINE Alu -6 127 5 2272 94 3 3 chr15 47317721 47318035 -38377719 + AluSg1 SINE Alu 1 309 0 2392 117 0 0 chr15 47318050 47318358 -38377396 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr15 47318460 47318487 -38377267 + (A)n Simple_repeat Simple_repeat 1 27 0 1623 118 0 5 chr15 47318487 47318708 -38377046 + AluSc SINE Alu 71 290 -19 293 259 63 28 chr15 47318732 47318875 -38376879 + L1ME4a LINE L1 5972 6119 -2 499 316 55 34 chr15 47320060 47320160 -38375594 + MIR SINE MIR 8 104 -158 1753 137 33 63 chr15 47320160 47320460 -38375294 - AluJb SINE Alu -10 302 12 499 316 55 34 chr15 47320460 47320596 -38375158 + MIR SINE MIR 104 249 -13 471 322 22 27 chr15 47320826 47321009 -38374745 - L3 LINE CR1 -16 1561 1380 472 248 40 24 chr15 47321068 47321193 -38374561 - L2 LINE L2 0 3313 3187 1226 153 5 15 chr15 47321391 47321593 -38374161 + AluSq SINE Alu 114 313 0 205 286 275 0 chr15 47321593 47321684 -38374070 - MIR SINE MIR -74 134 19 183 80 0 0 chr15 47321880 47321905 -38373849 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 220 286 197 34 chr15 47322465 47322612 -38373142 + MIR SINE MIR 90 260 -2 892 153 25 6 chr15 47322638 47322795 -38372959 + FRAM SINE Alu 11 170 -6 224 277 48 72 chr15 47322954 47323076 -38372678 + MER5B DNA MER1_type 16 134 -44 371 226 9 70 chr15 47322960 47323075 -38372679 - MER5A DNA MER1_type -21 168 61 2167 130 33 0 chr15 47323076 47323376 -38372378 - AluSg SINE Alu 0 310 1 224 277 48 72 chr15 47323376 47323419 -38372335 + MER5B DNA MER1_type 134 177 -1 1256 230 27 60 chr15 47323672 47323987 -38371767 - L1ME1 LINE L1 0 6170 5866 2188 137 0 10 chr15 47323987 47324300 -38371454 - AluJb SINE Alu -2 310 1 1256 230 27 60 chr15 47324300 47324436 -38371318 - L1ME1 LINE L1 -304 5866 5727 348 193 59 59 chr15 47324678 47324813 -38370941 - Charlie8 DNA MER1_type -2234 183 49 361 258 90 45 chr15 47325046 47325201 -38370553 + MER5B DNA MER1_type 17 178 0 555 309 42 0 chr15 47325357 47325548 -38370206 + MIR SINE MIR 14 212 -50 213 225 211 0 chr15 47326550 47326621 -38369133 - MIR SINE MIR -1 261 176 879 277 12 12 chr15 47326639 47326881 -38368873 + MIR SINE MIR 10 251 -11 465 270 55 12 chr15 47326960 47327123 -38368631 - MIR SINE MIR -1 261 92 661 219 107 6 chr15 47327658 47327836 -38367918 + MER91A DNA MER1_type 1 196 0 278 26 26 0 chr15 47328216 47328255 -38367499 + (TG)n Simple_repeat Simple_repeat 1 40 0 957 274 45 57 chr15 47329002 47329425 -38366329 - MLT1L LTR MaLR -4 611 194 186 235 37 74 chr15 47329707 47329788 -38365966 - MIR SINE MIR -111 151 74 342 266 80 0 chr15 47329788 47329901 -38365853 - MIR SINE MIR -120 142 21 2165 130 0 9 chr15 47330972 47331287 -38364467 - AluSx SINE Alu 0 312 1 306 50 0 0 chr15 47331906 47331946 -38363808 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 301 11 75 chr15 47332556 47332649 -38363105 + MIR3 SINE MIR 12 98 -110 326 284 154 0 chr15 47332781 47332950 -38362804 - MIR SINE MIR -3 259 65 973 156 35 0 chr15 47332983 47333156 -38362598 + MER5A DNA MER1_type 11 189 0 388 224 35 0 chr15 47333219 47333304 -38362450 - MER5A DNA MER1_type -76 113 26 506 308 6 6 chr15 47333340 47333496 -38362258 - MER5A DNA MER1_type -29 160 5 279 260 156 0 chr15 47333951 47334047 -38361707 + MIR3 SINE MIR 95 205 -3 375 261 118 0 chr15 47334461 47334580 -38361174 + MIR SINE MIR 130 262 0 1057 172 35 5 chr15 47335224 47335427 -38360327 + MER3 DNA MER1_type 1 209 0 210 294 20 0 chr15 47335608 47335659 -38360095 - MIR3 SINE MIR -45 163 112 307 291 99 14 chr15 47335868 47336009 -38359745 - MIR SINE MIR -33 229 77 533 306 50 25 chr15 47336707 47336948 -38358806 - MIR SINE MIR -6 256 4 287 270 26 63 chr15 47337042 47337191 -38358563 + MIR SINE MIR 20 164 -85 442 246 175 38 chr15 47337993 47338176 -38357578 - L3 LINE CR1 -14 1563 1356 561 275 73 53 chr15 47338743 47339198 -38356556 + L1MC4 LINE L1 7311 7882 -160 187 274 85 28 chr15 47339244 47339350 -38356404 - MIR SINE MIR -74 134 23 245 256 23 23 chr15 47339828 47339914 -38355840 + GA-rich Low_complexity Low_complexity 1 86 0 1673 188 3 16 chr15 47340112 47340420 -38355334 - AluJb SINE Alu -8 304 1 1256 110 0 0 chr15 47340427 47340590 -38355164 - AluSg/x SINE Alu -11 299 137 346 212 127 34 chr15 47340591 47340709 -38355045 - MIR SINE MIR -114 148 20 241 237 0 26 chr15 47341380 47341456 -38354298 + MER113 DNA MER1_type? 43 116 -405 2178 106 26 10 chr15 47342144 47342446 -38353308 + AluSx SINE Alu 1 307 -5 419 226 78 25 chr15 47342474 47342658 -38353096 - MLT1J2 LTR MaLR 0 428 266 372 279 0 0 chr15 47342684 47342770 -38352984 - MER5A DNA MER1_type -50 139 54 180 304 0 0 chr15 47342799 47342845 -38352909 - MER5A DNA MER1_type -137 52 7 325 178 151 0 chr15 47342892 47342965 -38352789 + MIR SINE MIR 38 121 -87 275 325 83 12 chr15 47343916 47344085 -38351669 + MIR3 SINE MIR 16 196 -12 2470 82 0 0 chr15 47344172 47344466 -38351288 - AluSx SINE Alu -18 294 1 332 250 84 21 chr15 47344975 47345159 -38350595 + MIR SINE MIR 21 214 -48 307 303 39 30 chr15 47345459 47345796 -38349958 + L1ME4a LINE L1 4963 5302 -844 2398 113 3 0 chr15 47345800 47346110 -38349644 + AluSp SINE Alu 1 311 -2 1920 130 3 65 chr15 47346118 47346441 -38349313 + AluJo SINE Alu 1 303 -9 2312 124 3 0 chr15 47346445 47346752 -38349002 + AluSx SINE Alu 3 310 -2 2407 88 0 13 chr15 47346757 47347064 -38348690 + AluY SINE Alu 1 303 -8 435 287 108 22 chr15 47347128 47347351 -38348403 + L1ME4a LINE L1 5446 5681 -440 434 137 183 65 chr15 47347376 47347529 -38348225 - MER5C DNA MER1_type -143 181 11 419 254 10 9 chr15 47347777 47347906 -38347848 + L1ME4a LINE L1 5696 5826 -295 2085 183 83 12 chr15 47347919 47348399 -38347355 - Charlie1b DNA MER1_type -5 518 5 2239 64 43 0 chr15 47348500 47348780 -38346974 + AluSp SINE Alu 22 313 0 414 302 9 18 chr15 47348792 47349014 -38346740 + AluSc SINE Alu 71 290 -19 400 271 62 82 chr15 47349600 47349730 -38346024 - L2 LINE L2 -18 3254 3129 2282 95 0 0 chr15 47349730 47350040 -38345714 - AluSx SINE Alu 0 310 1 400 271 62 82 chr15 47350040 47350152 -38345602 - L2 LINE L2 -143 3129 3016 749 239 35 59 chr15 47350155 47350409 -38345345 - MIR SINE MIR 0 262 15 218 206 127 16 chr15 47350409 47350472 -38345282 + MER91 DNA MER1_type 1 70 -70 274 221 36 50 chr15 47351704 47351844 -38343910 + GA-rich Low_complexity Low_complexity 1 138 0 1965 121 3 49 chr15 47351862 47352169 -38343585 + AluJb SINE Alu 5 297 -15 2303 101 0 29 chr15 47352174 47352482 -38343272 + AluSx SINE Alu 4 302 -10 442 271 47 16 chr15 47352873 47352987 -38342767 + L2 LINE L2 3138 3258 -14 976 75 6 6 chr15 47352987 47353148 -38342606 + (TGGA)n Simple_repeat Simple_repeat 1 161 0 442 271 47 16 chr15 47353148 47353162 -38342592 + L2 LINE L2 3258 3270 -2 180 231 0 0 chr15 47353202 47353254 -38342500 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 223 271 278 0 chr15 47353979 47354112 -38341642 - MIR SINE MIR -72 190 21 389 258 61 21 chr15 47354526 47354674 -38341080 + MIR SINE MIR 35 187 -67 280 218 184 0 chr15 47355638 47355725 -38340029 - MIR SINE MIR -84 124 22 265 224 51 51 chr15 47357100 47357198 -38338556 + MIR SINE MIR 2 99 -163 1390 72 0 11 chr15 47357198 47357379 -38338375 - AluY SINE Alu 0 311 133 2662 46 3 0 chr15 47357379 47357684 -38338070 - AluY SINE Alu -5 306 1 186 236 55 0 chr15 47357686 47357741 -38338013 + MIR SINE MIR 93 150 -112 836 105 0 0 chr15 47357861 47357966 -38337788 + AluSq/x SINE Alu 1 105 -207 355 200 33 0 chr15 47358090 47358180 -38337574 + MIR SINE MIR 48 140 -122 1286 147 22 22 chr15 47358592 47358817 -38336937 - AluJo SINE Alu -2 310 86 189 121 0 0 chr15 47358901 47358934 -38336820 + (TAA)n Simple_repeat Simple_repeat 2 34 0 195 129 0 0 chr15 47360139 47360170 -38335584 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1403 154 4 0 chr15 47361517 47361751 -38334003 + MER46A DNA MER2_type 2 236 0 537 327 55 0 chr15 47361798 47361997 -38333757 - MIR SINE MIR -5 257 48 332 200 53 32 chr15 47362327 47362422 -38333332 + MIR SINE MIR 92 188 -74 1416 217 150 25 chr15 47362572 47363006 -38332748 - MLT1D LTR MaLR -6 499 12 304 282 61 53 chr15 47363390 47363521 -38332233 - MIR SINE MIR -61 147 16 499 266 212 5 chr15 47365362 47365546 -38330208 + MIR SINE MIR 6 227 -35 999 266 85 79 chr15 47365567 47366165 -38329589 - L2 LINE L2 -6 3307 2687 2166 108 7 33 chr15 47366165 47366470 -38329284 + AluSx SINE Alu 1 297 -15 999 266 85 79 chr15 47366470 47366705 -38329049 - L2 LINE L2 -626 2687 2455 198 314 23 35 chr15 47366778 47366864 -38328890 - MIR SINE MIR -142 120 36 339 300 25 44 chr15 47367069 47367229 -38328525 - MIR SINE MIR -98 164 8 297 258 83 38 chr15 47367464 47367596 -38328158 + MIR3 SINE MIR 50 187 -21 187 250 87 11 chr15 47368136 47368228 -38327526 - L2 LINE L2 -303 2969 2871 450 229 182 6 chr15 47369329 47369499 -38326255 + MIR SINE MIR 44 243 -19 1332 239 121 41 chr15 47369514 47369978 -38325776 - MLT1F1 LTR MaLR 0 567 67 2176 118 17 0 chr15 47370035 47370323 -38325431 - AluSx SINE Alu -19 293 1 408 250 62 78 chr15 47370460 47370565 -38325189 + L1MC5 LINE L1 7738 7840 -121 1789 92 0 0 chr15 47370565 47370783 -38324971 + AluSx SINE Alu 1 218 -94 408 250 62 78 chr15 47370783 47370869 -38324885 + L1MC5 LINE L1 7840 7926 -35 1635 209 0 16 chr15 47370878 47371194 -38324560 - AluJo SINE Alu -1 311 1 471 220 0 0 chr15 47371626 47371735 -38324019 + L1MB7 LINE L1 6076 6184 0 25 31 0 0 chr15 47371873 47371905 -38323849 + AT_rich Low_complexity Low_complexity 1 32 0 2358 91 10 0 chr15 47371927 47372225 -38323529 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr15 47372253 47372276 -38323478 + (T)n Simple_repeat Simple_repeat 1 23 0 504 305 39 8 chr15 47373614 47373774 -38321980 - MIR SINE MIR -56 152 26 289 339 52 0 chr15 47374128 47374243 -38321511 - L2 LINE L2 -3 3310 3190 516 258 120 0 chr15 47375494 47375661 -38320093 + MIR SINE MIR 64 250 -12 324 266 0 0 chr15 47376048 47376127 -38319627 + MIR SINE MIR 180 258 -4 334 358 0 0 chr15 47376331 47376454 -38319300 - MIR3 SINE MIR -1 207 85 206 209 0 0 chr15 47377055 47377098 -38318656 + C-rich Low_complexity Low_complexity 1 43 0 369 238 0 0 chr15 47377361 47377441 -38318313 - MIR SINE MIR -57 151 72 726 286 44 0 chr15 47377591 47377818 -38317936 + MIR SINE MIR 2 238 -24 1466 251 63 12 chr15 47378043 47378149 -38317605 - Charlie4a DNA MER1_type -1479 482 383 1981 173 0 3 chr15 47378149 47378456 -38317298 + AluJo SINE Alu 1 306 -6 1466 251 63 12 chr15 47378456 47378775 -38316979 - Charlie4a DNA MER1_type -1578 383 35 611 224 99 0 chr15 47378950 47379111 -38316643 + MIR3 SINE MIR 32 208 0 413 296 11 7 chr15 47379514 47379681 -38316073 + MIR SINE MIR 56 222 -40 10800 115 63 54 chr15 47380134 47380345 -38315409 - Tigger2 DNA MER2_type -3 2715 2507 753 161 0 0 chr15 47380345 47380469 -38315285 + FLAM_C SINE Alu 1 124 -9 10800 115 63 54 chr15 47380469 47380566 -38315188 - Tigger2 DNA MER2_type -211 2507 2412 2093 101 69 0 chr15 47380566 47380843 -38314911 + AluSx SINE Alu 1 296 -16 10800 115 63 54 chr15 47380843 47381297 -38314457 - Tigger2 DNA MER2_type -306 2412 1963 2004 149 7 0 chr15 47381297 47381585 -38314169 - AluJb SINE Alu -22 290 1 10800 115 63 54 chr15 47381585 47381891 -38313863 - Tigger2 DNA MER2_type -755 1963 1661 2254 87 10 3 chr15 47381891 47382180 -38313574 - AluSq SINE Alu -9 304 14 10800 115 63 54 chr15 47382180 47382637 -38313117 - Tigger2 DNA MER2_type -1057 1661 1209 2083 135 4 0 chr15 47382637 47382956 -38312798 + AluSx SINE Alu 1 320 0 10800 115 63 54 chr15 47382956 47383386 -38312368 - Tigger2 DNA MER2_type -1509 1209 738 3015 131 21 76 chr15 47383397 47384029 -38311725 - Tigger2 DNA MER2_type -2118 600 4 934 287 15 33 chr15 47384029 47384364 -38311390 - L1MC4a LINE L1 -1876 5932 5604 880 257 105 0 chr15 47384403 47384718 -38311036 + L1ME3 LINE L1 5048 5395 -751 944 205 16 0 chr15 47384831 47385016 -38310738 + L1ME3 LINE L1 5399 5586 -578 377 275 23 30 chr15 47385007 47385138 -38310616 + L1ME3 LINE L1 6031 6160 -2 * 737 282 70 45 chr15 47385116 47385277 -38310477 - L1MC4a LINE L1 -2144 5664 5508 2426 96 0 6 chr15 47385277 47385590 -38310164 + AluY SINE Alu 1 311 0 737 282 70 45 chr15 47385590 47385829 -38309925 - L1MC4a LINE L1 -2300 5508 5254 359 331 65 34 chr15 47385864 47386543 -38309211 - L1MC4a LINE L1 -960 5186 4487 572 330 69 26 chr15 47386576 47386879 -38308875 - L1MC4a LINE L1 -1721 4425 4110 263 50 50 0 chr15 47387771 47387811 -38307943 - 5S rRNA rRNA -79 42 1 212 250 31 94 chr15 47388419 47388515 -38307239 - MIR SINE MIR -68 140 51 236 217 17 33 chr15 47388583 47388643 -38307111 + MIR3 SINE MIR 103 161 -47 240 315 176 0 chr15 47388790 47388898 -38306856 + MIR SINE MIR 57 183 -79 309 280 306 0 chr15 47388899 47389056 -38306698 - MIR SINE MIR 0 262 58 398 306 120 38 chr15 47389235 47389636 -38306118 - L2 LINE L2 -79 3234 2732 1992 104 4 0 chr15 47389707 47389958 -38305796 + AluSp SINE Alu 1 252 -61 639 166 19 13 chr15 47389964 47390121 -38305633 + GA-rich Low_complexity Low_complexity 4 161 0 22 0 0 0 chr15 47390627 47390649 -38305105 + AT_rich Low_complexity Low_complexity 1 22 0 2359 114 0 22 chr15 47390685 47391001 -38304753 + AluSx SINE Alu 1 309 -3 1918 153 0 17 chr15 47391090 47391390 -38304364 - AluJb SINE Alu -17 295 1 734 323 50 31 chr15 47391489 47392068 -38303686 + L1ME4a LINE L1 5266 5855 -266 1229 186 122 56 chr15 47392399 47392836 -38302918 - MLT1F LTR MaLR 0 542 13 234 0 0 0 chr15 47393070 47393096 -38302658 + (TG)n Simple_repeat Simple_repeat 2 27 0 1057 182 16 154 chr15 47393158 47393477 -38302277 - AluYa5 SINE Alu -24 287 13 196 265 29 78 chr15 47394088 47394164 -38301590 - MIR3 SINE MIR -14 194 123 1526 155 83 25 chr15 47394164 47394442 -38301312 + AluJo SINE Alu 1 294 -18 196 265 29 78 chr15 47394442 47394467 -38301287 - MIR3 SINE MIR -85 123 98 2403 86 3 0 chr15 47394467 47394770 -38300984 + AluSx SINE Alu 1 304 -8 335 237 59 8 chr15 47394835 47394953 -38300801 + L3 LINE CR1 1263 1386 -191 243 321 29 50 chr15 47395949 47396089 -38299665 + L3 LINE CR1 1020 1156 -421 420 312 32 19 chr15 47396415 47396569 -38299185 + MIR SINE MIR 49 204 -58 235 300 22 33 chr15 47396585 47396675 -38299079 + MIR SINE MIR 174 262 0 704 252 51 30 chr15 47396694 47396928 -38298826 - L2 LINE L2 0 3313 3075 1819 165 6 22 chr15 47397669 47397985 -38297769 - AluJb SINE Alu -1 311 1 271 264 55 0 chr15 47398226 47398336 -38297418 - MIR3 SINE MIR -34 174 59 2247 120 3 0 chr15 47399311 47399611 -38296143 + AluSq SINE Alu 9 309 -4 434 212 12 0 chr15 47399984 47400069 -38295685 - L2 LINE L2 -9 3304 3219 189 314 105 8 chr15 47400237 47400361 -38295393 - L2 LINE L2 -14 3258 3123 238 200 18 18 chr15 47400451 47400506 -38295248 - MIR SINE MIR 0 262 208 180 163 93 0 chr15 47400657 47400700 -38295054 - MIR SINE MIR -75 133 87 186 218 91 18 chr15 47401349 47401404 -38294350 + L2 LINE L2 2717 2775 -539 316 214 0 0 chr15 47401530 47401586 -38294168 - MER91B DNA MER1_type -126 64 9 456 202 59 34 chr15 47401615 47401734 -38294020 - L2 LINE L2 -2 3311 3190 439 232 116 14 chr15 47401780 47401918 -38293836 + MIR SINE MIR 99 250 -12 2243 92 3 17 chr15 47401978 47402273 -38293481 + AluSx SINE Alu 1 291 -21 185 330 154 0 chr15 47402773 47402864 -38292890 + MIR SINE MIR 44 148 -114 306 257 179 21 chr15 47403580 47403720 -38292034 + MER117 DNA MER1_type 36 197 0 413 234 73 16 chr15 47403733 47403857 -38291897 - MIR SINE MIR -62 146 16 192 362 47 16 chr15 47405000 47405127 -38290627 - L2 LINE L2 -527 2787 2657 202 267 81 58 chr15 47405696 47405782 -38289972 + MIR SINE MIR 28 115 -147 2013 140 0 3 chr15 47406264 47406556 -38289198 - AluSx SINE Alu -21 291 1 354 240 10 30 chr15 47406695 47406795 -38288959 - MER5B DNA MER1_type -1 177 80 266 191 36 60 chr15 47406834 47406918 -38288836 - MER5B DNA MER1_type -86 92 11 2379 103 6 0 chr15 47407067 47407378 -38288376 - AluSq SINE Alu 0 313 1 359 265 49 93 chr15 47407455 47407659 -38288095 + MIR SINE MIR 23 217 -45 2439 104 0 0 chr15 47407659 47407968 -38287786 + AluSp SINE Alu 1 309 -4 284 311 41 16 chr15 47408222 47408344 -38287410 - MIR3 SINE MIR -79 129 5 2009 146 91 3 chr15 47408684 47409047 -38286707 - MSTD LTR MaLR -1 395 1 1304 154 9 9 chr15 47409388 47409621 -38286133 + MER46A DNA MER2_type 1 233 -3 429 290 110 16 chr15 47409640 47409943 -38285811 - L1ME4a LINE L1 -240 5881 5538 180 242 20 91 chr15 47410097 47410196 -38285558 + L3 LINE CR1 1220 1311 -266 1024 248 47 69 chr15 47410839 47410914 -38284840 - HAL1 LINE L1 0 2507 2432 1687 198 72 24 chr15 47410914 47411329 -38284425 - MER63B DNA MER1_type -1 435 1 1024 248 47 69 chr15 47411329 47411687 -38284067 - HAL1 LINE L1 -75 2432 2084 1891 173 0 29 chr15 47411687 47411999 -38283755 - AluJb SINE Alu -9 303 1 1024 248 47 69 chr15 47411999 47412073 -38283681 - HAL1 LINE L1 -423 2084 2010 2575 37 7 3 chr15 47412088 47412384 -38283370 + AluY SINE Alu 1 297 -14 2954 7 0 0 chr15 47412384 47412694 -38283060 + AluYa5 SINE Alu 1 310 -1 419 213 62 15 chr15 47413130 47413264 -38282490 + MIR SINE MIR 12 152 -56 1974 134 48 0 chr15 47413360 47413650 -38282104 + AluSx SINE Alu 1 304 -8 515 165 53 23 chr15 47463704 47463837 -38231917 - L1MC5 LINE L1 -297 7664 7528 2209 104 10 3 chr15 47463876 47464174 -38231580 - AluSx SINE Alu -12 300 1 231 36 0 0 chr15 47464283 47464311 -38231443 + (CA)n Simple_repeat Simple_repeat 1 28 0 381 286 127 41 chr15 47464562 47464782 -38230972 - MIR SINE MIR -3 259 21 2462 90 0 0 chr15 47465452 47465753 -38230001 - AluSc SINE Alu -8 301 1 424 335 45 6 chr15 47465916 47466092 -38229662 + MIR SINE MIR 16 198 -64 1836 106 71 0 chr15 47466211 47466466 -38229288 - AluSc SINE Alu -36 273 1 540 254 229 20 chr15 47467397 47467641 -38228113 + L2 LINE L2 3019 3313 0 261 222 77 60 chr15 47469131 47469209 -38226545 - MER3 DNA MER1_type 0 209 127 2409 114 0 0 chr15 47469209 47469515 -38226239 + AluSx SINE Alu 1 306 -6 261 222 77 60 chr15 47469515 47469553 -38226201 - MER3 DNA MER1_type -82 127 91 985 179 143 88 chr15 47469556 47469829 -38225925 + AluJo SINE Alu 1 288 -14 1431 273 256 25 chr15 47469955 47471032 -38224722 + L2 LINE L2 365 1690 -1624 682 240 81 32 chr15 47471468 47471689 -38224065 + MIR SINE MIR 30 261 -1 385 252 200 0 chr15 47471966 47472081 -38223673 - MIR3 SINE MIR -35 173 36 846 141 0 15 chr15 47472217 47472352 -38223402 + L1PB4 LINE L1 6024 6156 0 2697 130 28 19 chr15 47472549 47472931 -38222823 + MSTB LTR MaLR 1 389 -37 2027 157 0 13 chr15 47472931 47473237 -38222517 - AluJo SINE Alu -10 302 1 2697 130 28 19 chr15 47473237 47473276 -38222478 + MSTB LTR MaLR 389 426 0 347 306 37 0 chr15 47473358 47473466 -38222288 + MIR SINE MIR 49 160 -102 317 256 50 41 chr15 47473485 47473606 -38222148 - MER5A DNA MER1_type 0 189 68 * 426 281 126 0 chr15 47473510 47473645 -38222109 + MER5A DNA MER1_type 37 188 -1 440 322 87 13 chr15 47473927 47474157 -38221597 - MLT1K LTR MaLR -250 338 92 367 219 184 9 chr15 47474650 47474764 -38220990 + MIR SINE MIR 8 141 -121 421 290 66 15 chr15 47475095 47475274 -38220480 + MIR3 SINE MIR 1 179 -29 403 268 146 29 chr15 47475441 47475646 -38220108 + MIR SINE MIR 20 248 -14 244 171 216 23 chr15 47475758 47475846 -38219908 + MIR SINE MIR 96 200 -62 1924 164 0 19 chr15 47475900 47476218 -38219536 - AluJb SINE Alu 0 312 1 207 363 12 12 chr15 47476344 47476424 -38219330 + L2 LINE L2 3162 3241 -31 302 352 96 12 chr15 47476660 47476992 -38218762 + L1ME4a LINE L1 5547 5906 -215 2156 122 7 0 chr15 47480075 47480371 -38215383 - AluSx SINE Alu -14 298 1 800 232 55 6 chr15 47480725 47480906 -38214848 - MIR SINE MIR -23 239 50 216 167 0 0 chr15 47481442 47481490 -38214264 + CT-rich Low_complexity Low_complexity 1 48 0 505 236 56 21 chr15 47481838 47481982 -38213772 - MIR3 SINE MIR -43 165 17 393 301 92 7 chr15 47483185 47483338 -38212416 + MIR3 SINE MIR 42 207 -1 318 238 86 9 chr15 47483520 47483625 -38212129 - MIR SINE MIR -52 210 98 252 219 174 43 chr15 47483772 47483866 -38211888 - MIR SINE MIR -49 159 54 2395 104 0 0 chr15 47484720 47485027 -38210727 - AluSx SINE Alu -5 307 1 361 257 47 50 chr15 47485592 47485787 -38209967 + MIR SINE MIR 4 196 -66 828 219 118 0 chr15 47486969 47487156 -38208598 + MER3 DNA MER1_type 1 209 0 214 295 80 64 chr15 47487732 47487983 -38207771 - L3 LINE CR1 -223 1354 1100 251 310 159 9 chr15 47489017 47489130 -38206624 - MIR SINE MIR 0 262 133 2182 153 128 12 chr15 47489294 47489894 -38205860 + MER39 LTR ERV1 1 707 0 190 304 76 68 chr15 47491245 47491495 -38204259 + L2 LINE L2 2627 2878 -436 195 333 0 0 chr15 47491682 47491730 -38204024 - L2 LINE L2 -38 3234 3187 543 148 254 4 chr15 47492189 47492329 -38203425 - MER45A DNA AcHobo 0 178 1 212 185 19 74 chr15 47493260 47493314 -38202440 - MIR3 SINE MIR -23 185 135 1876 134 10 0 chr15 47494556 47494846 -38200908 - AluSq SINE Alu -20 293 1 976 106 0 0 chr15 47494848 47494980 -38200774 - AluSq/x SINE Alu -180 132 1 406 207 80 93 chr15 47495189 47495339 -38200415 + MIR3 SINE MIR 46 193 -15 191 299 104 39 chr15 47496948 47497025 -38198729 - MIR3 SINE MIR -48 160 79 830 285 139 49 chr15 47498018 47498551 -38197203 + L3 LINE CR1 896 1476 -101 902 287 76 48 chr15 47498717 47498930 -38196824 - L2 LINE L2 0 3313 3107 2473 52 0 0 chr15 47498930 47499237 -38196517 + AluY SINE Alu 3 309 -2 902 287 76 48 chr15 47499237 47499497 -38196257 - L2 LINE L2 -206 3107 2827 197 211 18 0 chr15 47499672 47499729 -38196025 + GA-rich Low_complexity Low_complexity 1 58 0 415 240 95 9 chr15 47499845 47499958 -38195796 + MIR SINE MIR 38 163 -63 222 267 200 8 chr15 47500032 47500152 -38195602 + L2 LINE L2 3125 3267 -5 237 347 0 0 chr15 47500537 47500612 -38195142 - MIR3 SINE MIR -48 160 86 432 255 115 19 chr15 47500877 47501034 -38194720 - L1MC4a LINE L1 -1967 5841 5670 2029 122 0 3 chr15 47501124 47501419 -38194335 - AluSq SINE Alu -19 294 1 293 278 127 48 chr15 47501455 47501581 -38194173 - L2 LINE L2 -1 3271 3136 2460 128 33 10 chr15 47502331 47502721 -38193033 - MSTB LTR MaLR -27 399 1 263 172 108 6 chr15 47503544 47503621 -38192133 - MIR SINE MIR -65 143 95 414 281 118 13 chr15 47504037 47504190 -38191564 - MER5B DNA MER1_type -2 176 8 356 247 51 25 chr15 47505319 47505477 -38190277 + Charlie7 DNA MER1_type 2448 2609 -3 386 329 43 31 chr15 47505644 47505805 -38189949 - L2 LINE L2 -2 3270 3108 355 302 96 57 chr15 47505988 47506289 -38189465 - L2 LINE L2 -456 2858 2546 2177 98 0 7 chr15 47506628 47506935 -38188819 + AluSx SINE Alu 1 305 -7 1759 99 57 28 chr15 47507597 47507879 -38187875 - AluSq SINE Alu -23 290 1 284 254 84 0 chr15 47507946 47508017 -38187737 - MIR SINE MIR 0 262 186 210 204 102 91 chr15 47508723 47508811 -38186943 - MIR SINE MIR -115 147 59 2350 63 3 0 chr15 47509716 47510015 -38185739 - AluY SINE Alu -11 300 1 902 129 0 0 chr15 47510124 47510256 -38185498 + AluJb SINE Alu 1 132 -180 1099 189 103 42 chr15 47511103 47511415 -38184339 - MER58D DNA MER1_type -6 380 50 241 224 75 15 chr15 47511462 47511529 -38184225 - MER5A DNA MER1_type -100 89 19 256 296 44 67 chr15 47511599 47511734 -38184020 + MIR SINE MIR 80 211 -51 230 71 0 0 chr15 47512068 47512096 -38183658 + L1MC4 LINE L1 7093 7120 -922 831 186 136 62 chr15 47512127 47512369 -38183385 + MIR SINE MIR 2 261 -1 302 191 56 148 chr15 47512495 47512657 -38183097 - MIR SINE MIR -101 161 15 209 30 61 0 chr15 47513882 47513915 -38181839 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 82 0 0 chr15 47514037 47514086 -38181668 + GC_rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr15 47514560 47514602 -38181152 + GC_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr15 47514785 47514828 -38180926 + GC_rich Low_complexity Low_complexity 1 43 0 195 143 0 63 chr15 47515754 47515817 -38179937 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr15 47516471 47516491 -38179263 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr15 47519066 47519108 -38176646 + AT_rich Low_complexity Low_complexity 1 42 0 377 88 103 0 chr15 47519524 47519592 -38176162 - MADE1 DNA Mariner 0 80 6 211 270 48 0 chr15 47519593 47519656 -38176098 - L3b LINE CR1 -247 1336 1271 730 202 0 8 chr15 47520107 47520236 -38175518 + FLAM_A SINE Alu 1 128 -5 1689 143 10 36 chr15 47520298 47520605 -38175149 + AluJb SINE Alu 4 302 -10 2429 50 0 3 chr15 47520605 47520907 -38174847 + AluY SINE Alu 1 301 -10 1947 95 0 52 chr15 47520915 47521221 -38174533 + AluSq SINE Alu 13 302 -11 1972 147 10 0 chr15 47522012 47522318 -38173436 - AluJb SINE Alu -3 309 1 247 218 0 18 chr15 47522588 47522643 -38173111 + A-rich Low_complexity Low_complexity 4 57 0 2173 119 0 0 chr15 47523539 47523851 -38171903 + AluSx SINE Alu 1 312 0 653 235 25 12 chr15 47524614 47524776 -38170978 + MLT1J2 LTR MaLR 1 165 -282 182 262 0 0 chr15 47525198 47525240 -38170514 + MIR SINE MIR 218 259 -3 235 297 51 43 chr15 47525252 47525390 -38170364 + L2 LINE L2 2255 2393 -921 343 182 80 0 chr15 47526941 47527020 -38168734 + AluS SINE Alu 1 63 -236 1124 166 0 10 chr15 47527020 47527213 -38168541 - AluSx SINE Alu -121 191 1 245 330 18 0 chr15 47527435 47527544 -38168210 + L1ME2 LINE L1 139 249 -5956 343 412 11 6 chr15 47527593 47527770 -38167984 + L1ME2 LINE L1 246 423 -5973 182 37 37 0 chr15 47528024 47528051 -38167703 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 214 231 0 0 chr15 47528503 47528542 -38167212 + (CA)n Simple_repeat Simple_repeat 2 40 0 573 280 109 51 chr15 47530553 47531243 -38164511 + L1ME2 LINE L1 724 1453 -4943 1537 160 25 7 chr15 47531244 47531526 -38164228 - AluSx SINE Alu -22 290 4 340 129 48 16 chr15 47531557 47531619 -38164135 + AluS SINE Alu 1 64 -239 264 89 89 0 chr15 47531719 47531764 -38163990 + Alu SINE Alu 245 293 -7 399 257 50 83 chr15 47531765 47532065 -38163689 + L1ME2 LINE L1 1459 1748 -4648 2006 130 0 0 chr15 47532106 47532398 -38163356 - AluSx SINE Alu -19 293 2 766 167 179 6 chr15 47532470 47532632 -38163122 + AluJo SINE Alu 84 273 -39 2239 194 83 164 chr15 47532641 47533253 -38162501 + L1ME2 LINE L1 4133 4792 -1423 800 128 8 23 chr15 47533253 47533386 -38162368 + AluJb SINE Alu 1 131 -181 2239 194 83 164 chr15 47533386 47533614 -38162140 + L1ME2 LINE L1 4792 5037 -1178 1678 179 10 0 chr15 47533614 47533916 -38161838 - AluJo SINE Alu -7 305 1 2239 194 83 164 chr15 47533916 47534379 -38161375 + L1ME2 LINE L1 5037 5454 -761 942 115 0 0 chr15 47535079 47535209 -38160545 + FLAM_C SINE Alu 2 131 -12 2249 213 264 53 chr15 47535221 47536164 -38159590 + L1MC4 LINE L1 6586 7727 -315 866 153 0 0 chr15 47536164 47536301 -38159453 + FLAM_C SINE Alu 1 137 -6 724 193 45 0 chr15 47536315 47536491 -38159263 + L1MC4 LINE L1 7720 7903 -139 342 0 0 0 chr15 47536559 47536597 -38159157 + (CA)n Simple_repeat Simple_repeat 1 38 0 2150 188 97 40 chr15 47536637 47537099 -38158655 + L1ME2 LINE L1 5632 6133 -100 2044 116 7 0 chr15 47537099 47537392 -38158362 - AluSx SINE Alu -17 295 1 2150 188 97 40 chr15 47537392 47537497 -38158257 + L1ME2 LINE L1 6133 6231 -2 257 233 0 12 chr15 47538047 47538133 -38157621 + GA-rich Low_complexity Low_complexity 4 88 0 363 286 36 0 chr15 47538452 47538592 -38157162 + L1ME4a LINE L1 5705 5849 -272 180 0 0 0 chr15 47538613 47538633 -38157121 + (TG)n Simple_repeat Simple_repeat 1 20 0 300 242 103 67 chr15 47538978 47539143 -38156611 - MLT2E LTR ERVL -421 207 37 3145 149 53 42 chr15 47539486 47540077 -38155677 + L1MB7 LINE L1 5519 6119 -65 4691 114 17 35 chr15 47540077 47540531 -38155223 - L1MB3 LINE L1 -7 6176 5740 1828 56 9 0 chr15 47540531 47540763 -38154991 - AluY SINE Alu -12 299 66 4691 114 17 35 chr15 47540763 47541082 -38154672 - L1MB3 LINE L1 -443 5740 5417 3145 149 53 42 chr15 47541082 47541133 -38154621 + L1MB7 LINE L1 6119 6168 -16 1425 253 105 71 chr15 47541147 47541402 -38154352 + L1MC5 LINE L1 6741 6986 -1056 2467 52 0 0 chr15 47541402 47541710 -38154044 + AluY SINE Alu 1 308 -3 1425 253 105 71 chr15 47541710 47542259 -38153495 + L1MC5 LINE L1 6986 7495 -547 26 30 0 0 chr15 47542493 47542526 -38153228 + AT_rich Low_complexity Low_complexity 1 33 0 2325 92 14 0 chr15 47542798 47543090 -38152664 - AluSx SINE Alu -16 296 1 1578 115 23 59 chr15 47543111 47543415 -38152339 - MER33 DNA MER1_type -3 321 29 338 372 25 20 chr15 47543887 47544083 -38151671 + MIR3 SINE MIR 9 205 -3 1011 225 5 0 chr15 47544839 47545039 -38150715 + MLT1H LTR MaLR 1 201 -348 280 358 48 21 chr15 47545066 47545253 -38150501 + MIR3 SINE MIR 14 205 -3 356 302 73 78 chr15 47545463 47545528 -38150226 - MIR SINE MIR -27 235 171 1944 138 3 13 chr15 47545528 47545826 -38149928 - AluJb SINE Alu -17 295 1 356 302 73 78 chr15 47545826 47545992 -38149762 - MIR SINE MIR -91 171 5 234 324 20 47 chr15 47547111 47547259 -38148495 + L1ME LINE L1 271 414 -5656 297 0 0 0 chr15 47547281 47547314 -38148440 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1828 250 90 81 chr15 47548021 47549287 -38146467 + L1MC4 LINE L1 6460 7684 -311 6730 215 61 48 chr15 47549290 47551042 -38144712 - L1MEc LINE L1 -1674 5283 3476 2136 129 10 0 chr15 47551042 47551345 -38144409 - AluSx SINE Alu -6 306 1 6730 215 61 48 chr15 47551345 47552550 -38143204 - L1MEc LINE L1 -3481 3476 2288 2287 113 0 0 chr15 47552550 47552860 -38142894 - AluSg SINE Alu 0 310 1 1537 204 79 37 chr15 47552860 47553316 -38142438 - L1MEc LINE L1 -4788 2169 1695 559 288 58 97 chr15 47553370 47553731 -38142023 - MLT1I LTR MaLR 0 409 63 276 133 0 0 chr15 47553733 47553793 -38141961 + (T)n Simple_repeat Simple_repeat 1 60 0 7235 39 14 13 chr15 47553803 47555323 -38140431 - SVA Other Other -760 1375 50 246 32 0 0 chr15 47555323 47555354 -38140400 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 1853 178 3 0 chr15 47555567 47555876 -38139878 - AluJo SINE Alu -2 310 1 383 209 52 15 chr15 47555876 47556010 -38139744 - L1MC5 LINE L1 -303 7658 7520 1616 136 45 4 chr15 47556014 47556256 -38139498 - AluSx SINE Alu -60 252 1 495 246 65 72 chr15 47556308 47556584 -38139170 - L1MC4 LINE L1 -669 7373 7100 23 92 0 0 chr15 47556655 47556720 -38139034 + AT_rich Low_complexity Low_complexity 1 65 0 400 210 143 17 chr15 47556808 47556927 -38138827 - L1MC4 LINE L1 -437 7605 7472 1067 155 0 0 chr15 47557019 47557174 -38138580 + FRAM SINE Alu 1 154 -22 368 260 90 73 chr15 47557185 47557334 -38138420 - L1MEc LINE L1 -5302 1682 1537 2382 72 0 23 chr15 47557334 47557638 -38138116 - AluY SINE Alu -14 297 1 368 260 90 73 chr15 47557638 47557732 -38138022 - L1MEc LINE L1 -5447 1537 1331 36 0 0 0 chr15 47557891 47557927 -38137827 + AT_rich Low_complexity Low_complexity 1 36 0 2196 129 0 0 chr15 47557927 47558222 -38137532 - AluSx SINE Alu -17 295 1 814 309 60 58 chr15 47558235 47558737 -38137017 - L1MEc LINE L1 -5543 1404 902 29 28 0 0 chr15 47559107 47559143 -38136611 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr15 47559295 47559323 -38136431 + AT_rich Low_complexity Low_complexity 1 28 0 242 220 17 0 chr15 47559408 47559467 -38136287 + MIR SINE MIR 95 154 -108 1952 105 22 0 chr15 47559920 47560244 -38135510 - AluSx SINE Alu 0 330 1 21 36 0 0 chr15 47560275 47560303 -38135451 + AT_rich Low_complexity Low_complexity 1 28 0 460 167 0 12 chr15 47560855 47560939 -38134815 - AluS SINE Alu -8 302 220 189 0 0 0 chr15 47560966 47560987 -38134767 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 731 301 11 18 chr15 47561277 47561556 -38134198 - ERVL LTR ERVL -1694 4070 3794 645 289 23 0 chr15 47561625 47561798 -38133956 - ERVL LTR ERVL -2210 3554 3378 521 306 113 22 chr15 47561842 47562168 -38133586 + LTR16A LTR ERVL 90 453 -4 804 309 39 30 chr15 47562168 47562505 -38133249 - ERVL LTR ERVL -2306 3348 3009 2355 68 0 14 chr15 47563488 47563784 -38131970 + AluY SINE Alu 1 292 -19 332 259 0 0 chr15 47563944 47564025 -38131729 + Tigger3(Golem) DNA MER2_type 2 82 -2947 * 1949 148 16 0 chr15 47564023 47564326 -38131428 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 990 260 87 36 chr15 47564326 47564764 -38130990 - Charlie7 DNA MER1_type -2003 609 150 1454 207 43 15 chr15 47564771 47565288 -38130466 + Charlie1 DNA MER1_type 2142 2713 -48 5062 134 25 5 chr15 47565406 47566166 -38129588 - L1MC1 LINE L1 -1 6332 5558 1673 127 0 30 chr15 47566166 47566433 -38129321 - AluSx SINE Alu -53 259 1 973 84 7 28 chr15 47566433 47566576 -38129178 - L1MC1 LINE L1 -884 5449 5310 496 78 122 52 chr15 47566559 47566674 -38129080 - L1MA8 LINE L1 -3 6288 6166 * 315 333 62 18 chr15 47566673 47566946 -38128808 - L1M4 LINE L1 -3408 2738 2454 * 552 226 186 55 chr15 47566978 47567252 -38128502 + Charlie2 DNA MER1_type 137 446 -2336 * 1304 201 115 125 chr15 47567231 47567393 -38128361 + Charlie2 DNA MER1_type 1998 2160 -702 2206 107 3 0 chr15 47567393 47567682 -38128072 - AluSq SINE Alu -21 292 3 1304 201 115 125 chr15 47567682 47568229 -38127525 + Charlie2 DNA MER1_type 2160 2699 -163 2187 121 0 10 chr15 47568229 47568534 -38127220 - AluSx SINE Alu -10 302 1 1304 201 115 125 chr15 47568534 47568693 -38127061 + Charlie2 DNA MER1_type 2699 2858 -4 187 267 105 12 chr15 47568749 47568835 -38126919 - L3b LINE CR1 -131 1452 1359 375 289 52 10 chr15 47569105 47569202 -38126552 - MIR SINE MIR -70 138 38 522 259 24 42 chr15 47569235 47569401 -38126353 + MIR SINE MIR 82 244 -18 1786 101 14 11 chr15 47569735 47570011 -38125743 + AluSx SINE Alu 21 297 -15 270 0 0 0 chr15 47570114 47570144 -38125610 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 211 35 132 chr15 47570330 47570359 -38125395 - MER5B DNA MER1_type -75 103 73 2164 107 0 0 chr15 47570359 47570648 -38125106 + AluSq SINE Alu 11 299 -14 247 211 35 132 chr15 47570648 47570732 -38125022 - MER5B DNA MER1_type -105 73 1 2093 117 3 0 chr15 47570742 47571047 -38124707 - AluSq SINE Alu 0 306 1 553 287 159 31 chr15 47571082 47571340 -38124414 - L2 LINE L2 -1 3271 2981 246 202 160 21 chr15 47571600 47571694 -38124060 + L1MC/D LINE L1 5407 5513 -608 30 0 0 0 chr15 47572139 47572169 -38123585 + AT_rich Low_complexity Low_complexity 1 30 0 205 384 0 0 chr15 47572242 47572315 -38123439 - L2 LINE L2 -217 3055 2983 2011 94 8 0 chr15 47572686 47572952 -38122802 - L1PB2 LINE L1 -1 6150 5883 228 295 97 19 chr15 47573155 47573362 -38122392 - L1MC4a LINE L1 -1837 5971 5749 287 247 39 13 chr15 47573900 47573977 -38121777 + L1MC/D LINE L1 5603 5681 -2127 767 306 62 36 chr15 47574056 47574301 -38121453 + ERVL LTR ERVL 2131 2368 -3396 2321 88 3 0 chr15 47574301 47574597 -38121157 - AluSq SINE Alu -16 297 1 767 306 62 36 chr15 47574597 47575042 -38120712 + ERVL LTR ERVL 2368 2861 -2903 1792 148 35 19 chr15 47575050 47575101 -38120653 + MER44D DNA MER2_type 17 66 -2425 1336 134 84 15 chr15 47575101 47575363 -38120391 + L1MA3 LINE L1 6026 6305 0 1792 148 35 19 chr15 47575363 47575385 -38120369 + MER44D DNA MER2_type 66 86 -2405 1984 125 3 10 chr15 47575385 47575702 -38120052 + AluSx SINE Alu 1 312 0 1792 148 35 19 chr15 47575702 47575945 -38119809 + MER44D DNA MER2_type 86 609 0 2117 78 0 41 chr15 47576718 47577011 -38118743 + AluSg SINE Alu 5 285 -25 209 56 0 28 chr15 47577014 47577050 -38118704 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1182 112 6 12 chr15 47577849 47578019 -38117735 - AluSx SINE Alu -2 310 142 596 104 0 0 chr15 47578020 47578097 -38117657 - AluSx SINE Alu -234 78 2 1852 161 0 46 chr15 47578276 47578600 -38117154 - AluJb SINE Alu -2 310 2 285 326 0 12 chr15 47580719 47580805 -38114949 + MIR SINE MIR 22 106 -102 1869 171 10 0 chr15 47580955 47581254 -38114500 + AluJb SINE Alu 1 302 -10 330 221 39 29 chr15 47581864 47581968 -38113786 + MIR SINE MIR 37 141 -67 264 155 324 0 chr15 47582255 47582326 -38113428 + MER5C DNA MER1_type 2 95 -229 1284 238 187 62 chr15 47582332 47583135 -38112619 - L1MCc LINE L1 -5502 921 19 2040 120 14 0 chr15 47583547 47583822 -38111932 - AluSx SINE Alu -33 279 1 2361 80 10 0 chr15 47583996 47584295 -38111459 - AluSp SINE Alu -11 302 1 2070 163 3 5 chr15 47584312 47584680 -38111074 - L1MC3 LINE L1 0 7785 7419 791 135 0 0 chr15 47584709 47584820 -38110934 - FRAM SINE Alu -23 153 43 12071 166 68 41 chr15 47584893 47586357 -38109397 - L1MCa LINE L1 -2730 3696 2274 1935 160 0 0 chr15 47586357 47586651 -38109103 - AluJb SINE Alu -18 294 1 12071 166 68 41 chr15 47586651 47587272 -38108482 - L1MCa LINE L1 -4152 2274 1672 2347 104 3 0 chr15 47587272 47587581 -38108173 - AluSx SINE Alu -2 310 1 12071 166 68 41 chr15 47587581 47589093 -38106661 - L1MCa LINE L1 -4754 1672 3 303 252 43 0 chr15 47589077 47589192 -38106562 - L1MC5 LINE L1 -202 7759 7640 * 1182 70 0 0 chr15 47589193 47589335 -38106419 + AluYb8 SINE Alu 2 143 -175 1591 200 3 3 chr15 47590199 47590489 -38105265 + AluJo SINE Alu 1 290 -22 346 189 44 87 chr15 47590974 47591180 -38104574 + L1M4 LINE L1 5124 5320 -826 194 333 88 10 chr15 47591793 47591895 -38103859 - MIR SINE MIR -117 145 36 2175 110 7 0 chr15 47591896 47592187 -38103567 - AluSq SINE Alu -20 293 1 201 244 69 53 chr15 47592200 47592307 -38103447 + MIR SINE MIR 54 159 -64 1704 129 25 25 chr15 47592652 47592932 -38102822 - Tigger3(Golem) DNA MER2_type 0 3038 69 451 291 17 17 chr15 47593576 47593748 -38102006 - MER5B DNA MER1_type -3 175 4 289 238 179 12 chr15 47593796 47593880 -38101874 - L2 LINE L2 -19 3294 3197 2229 108 7 0 chr15 47593942 47594237 -38101517 + AluSx SINE Alu 1 297 -15 1484 160 137 0 chr15 47594535 47594798 -38100956 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr15 47594975 47595008 -38100746 + AT_rich Low_complexity Low_complexity 1 33 0 756 184 55 90 chr15 47595319 47595574 -38100180 + MER96B DNA MER1_type? 4 249 -168 3187 250 75 20 chr15 47595766 47596842 -38098912 - L1MC4 LINE L1 -207 7835 6701 1001 172 19 125 chr15 47596845 47597165 -38098589 - MLT1A1 LTR MaLR -79 286 1 200 328 8 22 chr15 47597166 47597300 -38098454 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 2198 98 3 10 chr15 47597317 47597612 -38098142 - AluSx SINE Alu -19 293 1 304 213 0 0 chr15 47597771 47597832 -38097922 + HERVL LTR ERVL 1756 1816 -3838 195 42 0 0 chr15 47598342 47598366 -38097388 + (CA)n Simple_repeat Simple_repeat 2 25 0 272 265 61 0 chr15 47600617 47600715 -38095039 - L1ME3A LINE L1 -14 6156 6053 1226 131 104 5 chr15 47601171 47601393 -38094361 - Tigger2 DNA MER2_type 0 2718 2475 3732 168 32 0 chr15 47601462 47602183 -38093571 - Tigger2 DNA MER2_type -1974 744 1 1411 141 0 0 chr15 47602917 47603109 -38092645 + AluJo SINE Alu 90 281 -31 1482 153 29 4 chr15 47603231 47603512 -38092242 - L1MB2 LINE L1 -30 6141 5854 219 36 0 0 chr15 47603579 47603607 -38092147 + (A)n Simple_repeat Simple_repeat 1 28 0 1099 198 152 35 chr15 47603755 47603951 -38091803 - MER97a DNA MER1_type? -43 851 679 2118 155 0 3 chr15 47603951 47604261 -38091493 - AluSx SINE Alu -3 309 1 1099 198 152 35 chr15 47604261 47604459 -38091295 - MER97a DNA MER1_type? -215 679 411 639 254 68 45 chr15 47604480 47604594 -38091160 - MER97c DNA MER1_type? -818 272 162 2350 108 0 0 chr15 47604594 47604901 -38090853 - AluSx SINE Alu -5 307 1 639 254 68 45 chr15 47604901 47605050 -38090704 - MER97c DNA MER1_type? -928 162 3 398 250 18 36 chr15 47605470 47605582 -38090172 + MER81 DNA DNA 1 110 -4 386 280 55 62 chr15 47606605 47606862 -38088892 + L1MC/D LINE L1 5502 5756 -2052 2262 108 10 0 chr15 47607145 47607440 -38088314 - AluSx SINE Alu -14 298 1 189 94 0 0 chr15 47607459 47607491 -38088263 + (T)n Simple_repeat Simple_repeat 1 32 0 1072 189 11 15 chr15 47607986 47608250 -38087504 + L1MB5 LINE L1 4267 4529 -1617 3531 195 22 11 chr15 47608259 47609037 -38086717 + L1MB5 LINE L1 4662 5465 -709 18467 25 19 0 chr15 47609037 47612027 -38083727 + L1PA4 LINE L1 3153 6155 0 3531 195 22 11 chr15 47612027 47612627 -38083127 + L1MB5 LINE L1 5465 6057 -117 811 161 0 0 chr15 47612629 47612747 -38083007 - FLAM_C SINE Alu -21 122 5 696 161 8 0 chr15 47612754 47612878 -38082876 + L1MB5 LINE L1 6050 6174 0 2291 123 0 0 chr15 47613130 47613432 -38082322 + AluSx SINE Alu 1 302 -10 263 328 15 0 chr15 47613568 47613635 -38082119 - MER5B DNA MER1_type -45 133 66 4304 169 46 60 chr15 47613636 47613799 -38081955 - L1MD1 LINE L1 0 6242 6078 1996 154 0 3 chr15 47613799 47614098 -38081656 - AluJb SINE Alu -14 298 1 4304 169 46 60 chr15 47614098 47615168 -38080586 - L1MD1 LINE L1 -164 6078 5049 3381 148 51 7 chr15 47615168 47615761 -38079993 + LTR31 LTR ERV1 1 619 0 4304 169 46 60 chr15 47615761 47616053 -38079701 - L1MD1 LINE L1 -1193 5049 4754 357 261 59 17 chr15 47616176 47616295 -38079459 + MIR SINE MIR 18 141 -67 183 283 17 33 chr15 47616416 47616476 -38079278 - MIR SINE MIR -63 145 87 261 261 109 17 chr15 47616519 47616638 -38079116 - L2 LINE L2 -6 3307 3178 803 97 0 0 chr15 47616971 47617085 -38078669 + L1PA13 LINE L1 6046 6159 -4 21 0 0 0 chr15 47617088 47617109 -38078645 + AT_rich Low_complexity Low_complexity 1 21 0 189 178 0 0 chr15 47617615 47617660 -38078094 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 207 69 0 0 chr15 47617828 47617857 -38077897 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 212 309 116 50 chr15 47618531 47618790 -38076964 - L2 LINE L2 -19 3294 3019 805 307 66 24 chr15 47619681 47620410 -38075344 + ERVL LTR ERVL 1772 2551 -2934 924 238 52 0 chr15 47620418 47620649 -38075105 - MLT1F1 LTR MaLR -57 510 268 3674 131 137 35 chr15 47620649 47621730 -38074024 - pTR5 LTR ERV1 -1 2437 923 335 372 0 14 chr15 47621730 47621878 -38073876 + L2 LINE L2 2643 2788 -526 2324 84 3 13 chr15 47621963 47622271 -38073483 - AluSx SINE Alu -7 305 1 22 0 0 0 chr15 47622875 47622897 -38072857 + GC_rich Low_complexity Low_complexity 1 22 0 867 218 37 52 chr15 47623520 47623556 -38072198 + MER58B DNA MER1_type 60 95 -2325 1498 48 5 0 chr15 47623556 47623743 -38072011 - L1PA5 LINE L1 0 6154 5967 867 218 37 52 chr15 47623743 47623977 -38071777 + MER58B DNA MER1_type 95 326 -15 211 182 0 0 chr15 47624830 47624863 -38070891 + C-rich Low_complexity Low_complexity 5 37 0 2098 125 0 3 chr15 47624863 47625160 -38070594 - AluSx SINE Alu -16 296 1 2156 122 0 0 chr15 47626045 47626341 -38069413 + AluJb SINE Alu 1 296 -16 40 79 0 0 chr15 47626490 47626579 -38069175 + AT_rich Low_complexity Low_complexity 1 89 0 308 267 92 94 chr15 47627316 47627606 -38068148 - L1MD3 LINE L1 -916 6892 6620 328 271 147 49 chr15 47627764 47628093 -38067661 - MLT1H1 LTR MaLR -66 489 118 1562 175 59 12 chr15 47628808 47629145 -38066609 + L1MB8 LINE L1 5774 6126 -52 305 269 115 44 chr15 47629702 47629884 -38065870 - L2 LINE L2 -1 3312 3118 1092 98 6 24 chr15 47629954 47630118 -38065636 - L1PA8A LINE L1 0 6131 5971 21 0 0 0 chr15 47630422 47630443 -38065311 + AT_rich Low_complexity Low_complexity 1 21 0 1988 132 45 0 chr15 47630449 47630736 -38065018 - AluSq SINE Alu -13 300 1 30 0 0 0 chr15 47630990 47631020 -38064734 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 47631069 47631097 -38064657 + AT_rich Low_complexity Low_complexity 1 28 0 223 375 42 0 chr15 47631228 47631324 -38064430 + MIR SINE MIR 36 135 -73 242 263 0 0 chr15 47631350 47631407 -38064347 + MIR SINE MIR 204 260 -2 460 45 15 0 chr15 47632597 47632664 -38063090 - L1PB2 LINE L1 -7 6144 6077 1638 186 79 87 chr15 47632664 47633397 -38062357 - L1MC5 LINE L1 -112 7849 7123 279 263 132 85 chr15 47633434 47633776 -38061978 - L1M4 LINE L1 -1299 4847 4490 1640 229 84 23 chr15 47633798 47634274 -38061480 - MLT1D LTR MaLR 0 505 1 1555 174 4 4 chr15 47634333 47634592 -38061162 - AluJb SINE Alu -53 259 1 429 19 0 0 chr15 47634634 47634687 -38061067 - AluY SINE Alu -14 297 245 648 296 10 27 chr15 47634724 47635025 -38060729 - L1M4 LINE L1 -1821 4325 4030 259 318 57 0 chr15 47635214 47635302 -38060452 - MIR SINE MIR -111 151 59 303 28 0 0 chr15 47635543 47635579 -38060175 + (TG)n Simple_repeat Simple_repeat 2 37 0 641 237 84 21 chr15 47637105 47637295 -38058459 - MER58A DNA MER1_type -10 214 13 2276 157 40 2 chr15 47637316 47637736 -38058018 + MER63B DNA MER1_type 1 436 0 21 71 0 0 chr15 47638017 47638059 -38057695 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr15 47639038 47639078 -38056676 + AT_rich Low_complexity Low_complexity 1 40 0 2268 102 0 0 chr15 47639505 47639798 -38055956 - AluSx SINE Alu -18 294 2 458 319 92 65 chr15 47640149 47640760 -38054994 - L2 LINE L2 0 3272 2643 2024 63 0 0 chr15 47640827 47641066 -38054688 + AluSq SINE Alu 1 239 -74 447 88 0 0 chr15 47641092 47641149 -38054605 + AluSg/x SINE Alu 217 273 -37 231 324 0 0 chr15 47641170 47641244 -38054510 - L2 LINE L2 -787 2527 2454 226 178 40 105 chr15 47641388 47641540 -38054214 - MER65A LTR ERV1 0 445 304 327 236 19 38 chr15 47641698 47641804 -38053950 - MER65B LTR ERV1 -427 104 1 1978 219 51 58 chr15 47641804 47642018 -38053736 - L1MC5 LINE L1 -100 7861 7647 2046 134 7 0 chr15 47642018 47642310 -38053444 + AluSx SINE Alu 1 294 -18 1978 219 51 58 chr15 47642310 47642960 -38052794 - L1MC5 LINE L1 -314 7647 7003 1666 172 77 23 chr15 47642984 47643374 -38052380 - L1MC1 LINE L1 -1 6332 5922 2620 110 14 2 chr15 47643376 47643794 -38051960 - Tigger4(Zombi) DNA MER2_type -3 2728 2306 550 161 0 102 chr15 47643792 47643866 -38051888 - Tigger4(Zombi) DNA MER2_type -2625 106 26 * 196 114 0 0 chr15 47643866 47643901 -38051853 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1875 127 3 38 chr15 47643901 47644192 -38051562 - AluSx SINE Alu -31 281 1 550 161 0 102 chr15 47644192 47644234 -38051520 - Tigger4(Zombi) DNA MER2_type -2703 28 1 3457 115 24 24 chr15 47644234 47644544 -38051210 - L1MC1 LINE L1 -410 5923 5611 2573 160 21 5 chr15 47644544 47644963 -38050791 + MSTB LTR MaLR 1 426 0 3457 115 24 24 chr15 47644963 47645201 -38050553 - L1MC1 LINE L1 -721 5612 5375 3089 139 70 95 chr15 47645170 47645888 -38049866 - L1MD1 LINE L1 -17 6225 5526 * 6728 191 61 41 chr15 47645895 47648696 -38047058 - L1MDa LINE L1 -2379 4161 1305 2466 92 0 0 chr15 47648696 47648999 -38046755 - AluSg SINE Alu -7 303 1 6728 191 61 41 chr15 47648999 47649206 -38046548 - L1MDa LINE L1 -5235 1305 1104 2887 224 71 10 chr15 47649197 47649804 -38045950 - L1MDa LINE L1 -5822 718 75 * 423 291 44 25 chr15 47649861 47650064 -38045690 - L2 LINE L2 -606 2708 2502 3796 174 52 3 chr15 47650069 47650747 -38045007 + MER50 LTR ERV1 1 711 -23 493 253 5 58 chr15 47650831 47651021 -38044733 + L2 LINE L2 3118 3297 -16 299 296 118 98 chr15 47651044 47651613 -38044141 - L2 LINE L2 -925 2389 1803 2498 63 3 0 chr15 47651613 47651915 -38043839 + AluY SINE Alu 1 303 -8 299 296 118 98 chr15 47651915 47652025 -38043729 - L2 LINE L2 -1511 1803 1697 2524 114 28 142 chr15 47652043 47652586 -38043168 + LTR12 LTR ERV1 1 481 -233 192 182 0 0 chr15 47652830 47652863 -38042891 + L2 LINE L2 3263 3295 -18 7889 214 99 52 chr15 47653080 47654030 -38041724 - L1PB2 LINE L1 0 6854 5950 905 135 70 11 chr15 47654030 47654215 -38041539 - L1MA8 LINE L1 -3 6288 6093 7889 214 99 52 chr15 47654215 47655544 -38040210 - L1PB2 LINE L1 -904 5950 4685 1696 192 6 10 chr15 47655544 47655857 -38039897 - AluJo SINE Alu 0 312 1 7889 214 99 52 chr15 47655857 47656144 -38039610 - L1PB2 LINE L1 -2169 4685 4413 7391 45 8 63 chr15 47656144 47657902 -38037852 - SVA Other Other -683 1385 2 7889 214 99 52 chr15 47657902 47659928 -38035826 - L1PB2 LINE L1 -2441 4413 2061 6361 206 120 29 chr15 47660136 47662689 -38033065 + L1M4 LINE L1 49 2820 -3824 183 409 0 11 chr15 47662689 47662782 -38032972 - MIR SINE MIR -100 108 17 238 222 95 40 chr15 47663020 47663146 -38032608 - L1ME LINE L1 -298 5823 5691 21 0 0 0 chr15 47664267 47664288 -38031466 + AT_rich Low_complexity Low_complexity 1 21 0 802 280 56 0 chr15 47664301 47664452 -38031302 - HERVL LTR ERVL -1868 3896 3724 2683 146 23 38 chr15 47664452 47664926 -38030828 - MLT1C LTR MaLR 0 467 1 802 280 56 0 chr15 47664926 47665024 -38030730 - HERVL LTR ERVL -2040 3724 3633 1131 68 0 0 chr15 47665346 47665479 -38030275 - AluYb8 SINE Alu -185 133 1 4810 172 23 42 chr15 47665492 47666463 -38029291 - L1MD2 LINE L1 -16 6343 5392 318 153 0 34 chr15 47666463 47666522 -38029232 - AluJb SINE Alu -3 299 243 4878 118 68 130 chr15 47666531 47667995 -38027759 - pTR5 LTR ERV1 -1 2437 741 1466 172 30 0 chr15 47667995 47668227 -38027527 - AluJb SINE Alu -73 239 1 2937 234 119 26 chr15 47668228 47668868 -38026886 - L1MD2 LINE L1 -749 5397 4818 6649 108 29 46 chr15 47668868 47669957 -38025797 - MER11C LTR ERVK 0 1071 1 2937 234 119 26 chr15 47669957 47670399 -38025355 - L1MD2 LINE L1 -1328 4818 4214 1039 309 51 20 chr15 47670416 47671171 -38024583 - HERVL LTR ERVL -1955 3041 2259 1081 342 92 25 chr15 47671190 47671872 -38023882 - HERVL LTR ERVL -3699 2065 1338 543 246 183 11 chr15 47672034 47672225 -38023529 - MER115 DNA AcHobo -1 692 469 1303 318 78 73 chr15 47672389 47673372 -38022382 - HERVL LTR ERVL -1066 4588 3601 527 340 73 9 chr15 47673487 47673719 -38022035 - HERVL LTR ERVL -2813 2841 2595 1099 303 42 30 chr15 47673810 47674242 -38021512 - HERVL LTR ERVL -3253 2511 2075 894 176 94 0 chr15 47674245 47674404 -38021350 - MER96 DNA MER1_type 0 175 2 2889 10 0 0 chr15 47674451 47674758 -38020996 - AluYb8 SINE Alu -11 307 1 850 275 78 76 chr15 47675343 47675841 -38019913 - LTR33 LTR ERVL -22 499 1 584 237 94 74 chr15 47675995 47676414 -38019340 + LTR15 LTR ERV1 112 493 0 1098 162 81 24 chr15 47676414 47676624 -38019130 + REP3 LTR ERV 341 562 0 593 148 154 27 chr15 47676624 47676772 -38018982 + MER97a DNA MER1_type? 165 331 -563 895 119 0 0 chr15 47676773 47676899 -38018855 + FLAM_C SINE Alu 1 126 -7 471 292 13 0 chr15 47677257 47677411 -38018343 - MIR3 SINE MIR -7 201 46 216 0 0 0 chr15 47677555 47677579 -38018175 + (T)n Simple_repeat Simple_repeat 1 24 0 690 283 32 16 chr15 47677623 47677874 -38017880 - MIR SINE MIR -6 256 2 408 269 92 0 chr15 47677904 47678034 -38017720 - MIR SINE MIR -109 153 12 206 250 109 0 chr15 47678196 47678260 -38017494 + MIR SINE MIR 83 153 -109 252 309 31 0 chr15 47678343 47678440 -38017314 + MIR SINE MIR 154 253 -9 193 114 0 45 chr15 47678713 47678757 -38016997 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1232 156 88 123 chr15 47679866 47680321 -38015433 + LTR7 LTR ERV1 10 448 -2 2019 169 48 5 chr15 47680325 47680704 -38015050 + HERVH LTR ERV1 1 395 -7318 1393 85 11 0 chr15 47680847 47681023 -38014731 + AluSp SINE Alu 117 294 -19 229 167 48 0 chr15 47681461 47681503 -38014251 + (CATG)n Simple_repeat Simple_repeat 3 46 0 506 286 43 0 chr15 47681921 47682061 -38013693 + MIR SINE MIR 5 150 -112 2274 197 30 13 chr15 47682240 47682708 -38013046 + MER74A LTR ERVL 4 479 -79 209 303 173 27 chr15 47682789 47682974 -38012780 - MIR SINE MIR -35 227 16 303 161 18 18 chr15 47683264 47683320 -38012434 - LTR67 LTR ERVL -4 553 498 883 242 17 74 chr15 47683397 47683694 -38012060 - LTR4 LTR ERV1 0 596 317 637 235 103 80 chr15 47683782 47684131 -38011623 - LTR4 LTR ERV1 -239 357 1 861 188 6 12 chr15 47684132 47684292 -38011462 - HERV3 LTR ERV1 0 8426 8268 * 7904 160 29 6 chr15 47684287 47685513 -38010241 - HERV3 LTR ERV1 -1971 6455 5201 * 10133 175 14 2 chr15 47685491 47687150 -38008604 - HERV3 LTR ERV1 -4548 3878 2200 279 0 0 0 chr15 47687358 47687389 -38008365 + (TG)n Simple_repeat Simple_repeat 2 32 0 2423 107 0 0 chr15 47688349 47688657 -38007097 + AluSx SINE Alu 1 308 -4 284 280 0 0 chr15 47689133 47689208 -38006546 + GA-rich Low_complexity Low_complexity 2 76 0 213 278 56 35 chr15 47690114 47690258 -38005496 - MIR SINE MIR -27 235 89 192 294 127 32 chr15 47690468 47690594 -38005160 - MIR SINE MIR -18 244 107 207 244 0 0 chr15 47690755 47690800 -38004954 + CT-rich Low_complexity Low_complexity 1 45 0 2598 131 45 99 chr15 47691028 47691373 -38004381 - MER4B LTR ERV1 -36 574 275 2176 128 0 3 chr15 47691373 47691678 -38004076 - AluSq SINE Alu -9 304 1 2598 131 45 99 chr15 47691678 47691935 -38003819 - MER4B LTR ERV1 -335 275 5 186 43 0 0 chr15 47693499 47693522 -38002232 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2113 146 0 0 chr15 47693530 47693832 -38001922 + AluSx SINE Alu 1 302 -10 234 269 75 11 chr15 47693910 47694003 -38001751 - MIR SINE MIR -72 136 38 2321 147 15 27 chr15 47694136 47694537 -38001217 - MER57A LTR ERV1 0 403 8 962 182 147 15 chr15 47694554 47694752 -38001002 - MER57A-int LTR ERV1 -29 7508 7285 582 177 18 9 chr15 47694752 47694865 -38000889 - LTR54B LTR ERV1 -367 131 18 2829 195 17 12 chr15 47694865 47695382 -38000372 - MER57A-int LTR ERV1 -403 7134 6615 * 3776 159 49 48 chr15 47695363 47696116 -37999638 - MER57A-int LTR ERV1 -870 6667 5914 366 199 99 25 chr15 47696185 47696286 -37999468 - MER57A-int LTR ERV1 -1631 6122 5825 796 61 44 9 chr15 47696574 47696688 -37999066 - MER57A-int LTR ERV1 -1716 5821 5704 3630 161 11 11 chr15 47696701 47697329 -37998425 - MER57A-int LTR ERV1 -1936 5601 4974 3263 108 140 16 chr15 47697329 47697892 -37997862 - LTR10E LTR ERV1 0 633 1 2737 161 44 56 chr15 47697894 47698626 -37997128 - MER57A-int LTR ERV1 -1906 4425 3703 686 195 33 62 chr15 47698653 47699011 -37996743 - MER57A-int LTR ERV1 -2633 3698 1925 22 0 0 0 chr15 47699109 47699131 -37996623 + AT_rich Low_complexity Low_complexity 1 22 0 495 261 17 0 chr15 47699258 47699373 -37996381 - MER65-int LTR ERV1 -2867 3464 3348 1712 175 114 43 chr15 47699479 47699901 -37995853 + LTR10A LTR ERV1 97 548 -61 1145 169 43 47 chr15 47699913 47700168 -37995586 - MER65-int LTR ERV1 -2997 3334 3081 404 204 39 19 chr15 47700261 47700364 -37995390 - MER65-int LTR ERV1 -3676 1195 1091 583 226 176 41 chr15 47700432 47700653 -37995101 - MER34C LTR ERV1 -180 405 155 359 275 99 0 chr15 47700657 47700788 -37994966 - MER65-int LTR ERV1 -4139 984 841 2200 103 0 0 chr15 47700882 47701172 -37994582 - AluSx SINE Alu -22 290 1 1235 135 39 5 chr15 47701287 47701495 -37994259 - L1MB3 LINE L1 -95 6088 5874 241 292 0 0 chr15 47701719 47701784 -37993970 + (TG)n Simple_repeat Simple_repeat 2 66 0 2174 95 0 3 chr15 47702638 47702933 -37992821 + AluSq SINE Alu 3 296 -17 39 59 0 12 chr15 47703694 47703741 -37992013 + AT_rich Low_complexity Low_complexity 1 48 -36 1550 138 0 8 chr15 47703741 47703981 -37991773 - AluJb SINE Alu -31 281 44 39 59 0 12 chr15 47703981 47704018 -37991736 + AT_rich Low_complexity Low_complexity 48 84 0 2251 76 3 3 chr15 47705054 47705356 -37990398 + AluY SINE Alu 1 302 -9 485 279 7 36 chr15 47705938 47706078 -37989676 + MIR SINE MIR 126 261 -1 220 252 52 61 chr15 47706073 47706188 -37989566 - L2 LINE L2 -93 3220 3107 * 257 300 90 50 chr15 47707214 47707314 -37988440 - L2 LINE L2 0 3313 3210 199 357 25 45 chr15 47707580 47707737 -37988017 - L2 LINE L2 -460 2854 2701 385 274 47 0 chr15 47708636 47708742 -37987012 + L2 LINE L2 3202 3312 -1 264 246 15 0 chr15 47708744 47708809 -37986945 + MLT1J LTR MaLR 440 505 -6 721 253 74 139 chr15 47710045 47710619 -37985135 - MLT1H1 LTR MaLR -2 553 4 525 44 0 0 chr15 47710740 47710808 -37984946 + (CA)n Simple_repeat Simple_repeat 2 69 0 364 175 0 0 chr15 47710967 47711030 -37984724 - MIR SINE MIR -109 153 91 857 118 0 0 chr15 47711103 47711222 -37984532 + FLAM_C SINE Alu 7 125 -18 3222 58 0 2 chr15 47711245 47711643 -37984111 + L1PA7 LINE L1 5745 6141 -13 213 255 78 0 chr15 47711691 47711742 -37984012 - MIR SINE MIR -76 132 78 193 250 0 0 chr15 47711782 47711818 -37983936 + L2 LINE L2 3217 3252 -20 298 213 24 16 chr15 47712208 47712335 -37983419 + GA-rich Low_complexity Low_complexity 5 132 0 2787 134 19 0 chr15 47712597 47713014 -37982740 - MSTB LTR MaLR 0 426 2 425 289 20 33 chr15 47713108 47713260 -37982494 - MIR SINE MIR 0 262 113 281 254 30 15 chr15 47713381 47713448 -37982306 - MIR SINE MIR -178 84 17 255 219 47 0 chr15 47713910 47713974 -37981780 + L1MC4a LINE L1 5476 5542 -624 857 263 104 75 chr15 47713999 47714452 -37981302 - MLT1J LTR MaLR -45 466 1 384 256 55 108 chr15 47714464 47714574 -37981180 + L1MC4a LINE L1 5588 5702 -419 2095 196 122 14 chr15 47714574 47715084 -37980670 + MLT1F1 LTR MaLR 3 567 0 384 256 55 108 chr15 47715084 47715371 -37980383 + L1MC4a LINE L1 5702 5964 -157 227 317 123 62 chr15 47716852 47717095 -37978659 + L2 LINE L2 2977 3234 -38 190 276 79 13 chr15 47717604 47717680 -37978074 - MIR SINE MIR -10 252 172 642 248 37 6 chr15 47718487 47718648 -37977106 + MER5B DNA MER1_type 7 172 -6 324 270 54 68 chr15 47718674 47718822 -37976932 - MER5A DNA MER1_type -28 161 16 447 282 36 46 chr15 47718849 47719044 -37976710 + L2 LINE L2 3121 3313 0 2475 40 0 3 chr15 47719104 47719403 -37976351 + AluY SINE Alu 1 298 -13 210 341 73 43 chr15 47719754 47719918 -37975836 - L2 LINE L2 0 3272 3104 394 140 50 120 chr15 47719925 47719966 -37975788 - HsTC2 DNA Tc2 -7 1891 1849 2379 67 0 0 chr15 47719966 47720265 -37975489 + AluY SINE Alu 1 299 -12 394 140 50 120 chr15 47720265 47720323 -37975431 - HsTC2 DNA Tc2 -49 1849 1799 197 380 0 22 chr15 47720550 47720642 -37975112 + L2 LINE L2 2764 2853 -461 355 246 68 34 chr15 47720701 47720819 -37974935 + L2 LINE L2 2941 3062 -210 3327 52 0 26 chr15 47720882 47721308 -37974446 - L1PA7 LINE L1 0 6154 5740 205 312 143 0 chr15 47721393 47721470 -37974284 + L2 LINE L2 3185 3272 0 251 303 76 30 chr15 47721641 47721773 -37973981 + L2 LINE L2 2653 2790 -524 306 257 14 0 chr15 47722053 47722123 -37973631 - MLT1K LTR MaLR -7 581 511 386 289 9 18 chr15 47722213 47722327 -37973427 + MLT1K LTR MaLR 37 149 -439 249 231 0 0 chr15 47723412 47723464 -37972290 - MLT1F LTR MaLR 0 542 491 426 244 91 57 chr15 47723745 47723921 -37971833 + MIR SINE MIR 65 246 -16 183 191 64 43 chr15 47723938 47723985 -37971769 - MIR SINE MIR -60 148 101 354 339 67 6 chr15 47724372 47724552 -37971202 + L3 LINE CR1 702 892 -685 505 238 97 56 chr15 47724597 47724787 -37970967 + MIR3 SINE MIR 8 203 -5 856 333 114 19 chr15 47724796 47725418 -37970336 + L3 LINE CR1 893 1573 -4 225 312 45 78 chr15 47725661 47725815 -37969939 + L2 LINE L2 3165 3313 0 232 271 0 14 chr15 47726219 47726289 -37969465 + L1ME LINE L1 5853 5921 -200 183 156 0 0 chr15 47726296 47726328 -37969426 + A-rich Low_complexity Low_complexity 3 34 0 2497 202 73 10 chr15 47726334 47726838 -37968916 - MLT1F LTR MaLR -2 540 5 332 286 8 45 chr15 47726850 47726983 -37968771 - L2 LINE L2 0 3313 3186 739 331 52 10 chr15 47726991 47727299 -37968455 - L2 LINE L2 -410 2904 2584 21 0 0 0 chr15 47727352 47727373 -37968381 + AT_rich Low_complexity Low_complexity 1 21 0 1354 133 0 14 chr15 47727373 47727591 -37968163 + AluSg/x SINE Alu 80 294 -16 377 234 37 23 chr15 47727592 47727761 -37967993 + L1ME4a LINE L1 5777 5921 -200 262 148 197 0 chr15 47727933 47727994 -37967760 + MIR SINE MIR 70 142 -120 216 297 45 64 chr15 47728613 47728738 -37967016 + MIR SINE MIR 40 162 -68 641 254 27 22 chr15 47729584 47729769 -37965985 + MLT1D LTR MaLR 8 193 -312 835 195 18 0 chr15 47730794 47730958 -37964796 - FRAM SINE Alu -8 168 2 809 245 118 31 chr15 47731818 47732141 -37963613 - MLT1J2 LTR MaLR -7 443 93 180 0 0 0 chr15 47733401 47733421 -37962333 + (TC)n Simple_repeat Simple_repeat 1 20 0 805 166 58 0 chr15 47733560 47733699 -37962055 - FRAM SINE Alu -30 146 1 502 157 0 0 chr15 47733972 47734055 -37961699 + MLT1E2 LTR MaLR 544 626 0 532 217 51 45 chr15 47734095 47734252 -37961502 - MLT1J LTR MaLR -3 508 351 569 240 28 83 chr15 47734291 47734545 -37961209 + L2 LINE L2 3062 3301 -12 1029 138 83 114 chr15 47734550 47734666 -37961088 + AluJo SINE Alu 37 155 -157 1891 100 10 35 chr15 47734666 47735001 -37960753 + AluSx SINE Alu 1 328 0 1029 138 83 114 chr15 47735001 47735137 -37960617 + AluJo SINE Alu 155 282 -30 198 103 0 0 chr15 47735137 47735166 -37960588 + (TC)n Simple_repeat Simple_repeat 2 30 0 207 114 0 0 chr15 47735541 47735576 -37960178 + (GA)n Simple_repeat Simple_repeat 2 36 0 620 304 63 5 chr15 47735643 47735850 -37959904 - MLT1J LTR MaLR -286 225 7 375 213 27 0 chr15 47735985 47736060 -37959694 - MIR3 SINE MIR -54 154 78 562 216 170 0 chr15 47736162 47736315 -37959439 + MER5A DNA MER1_type 1 179 -10 359 346 19 0 chr15 47736972 47737076 -37958678 + MIR3 SINE MIR 57 162 -46 222 189 0 38 chr15 47737400 47737435 -37958319 + (TTCA)n Simple_repeat Simple_repeat 3 37 -16 2023 134 20 0 chr15 47737435 47737741 -37958013 - AluSx SINE Alu 0 312 1 222 189 0 38 chr15 47737741 47737758 -37957996 + (TTCA)n Simple_repeat Simple_repeat 37 53 0 964 223 5 15 chr15 47738691 47738897 -37956857 - MIR SINE MIR -58 204 1 279 0 0 0 chr15 47739149 47739180 -37956574 + (CA)n Simple_repeat Simple_repeat 2 32 0 368 165 0 55 chr15 47739353 47739444 -37956310 - MIR SINE MIR -46 216 131 467 255 174 19 chr15 47739495 47739656 -37956098 + MIR3 SINE MIR 17 202 -6 920 155 187 11 chr15 47740441 47740628 -37955126 + MER58A DNA MER1_type 5 224 0 872 266 12 73 chr15 47740713 47741040 -37954714 - MER46C DNA MER2_type -25 313 7 400 279 116 7 chr15 47741079 47741226 -37954528 - MIR SINE MIR -84 178 16 653 249 57 50 chr15 47742196 47742380 -37953374 + MIR SINE MIR 1 180 -41 1937 130 42 77 chr15 47742459 47742836 -37952918 - THE1B LTR MaLR 0 364 1 494 280 27 33 chr15 47742865 47743015 -37952739 - MER117 DNA MER1_type -1 196 48 3989 178 82 8 chr15 47743919 47744639 -37951115 + MER21B LTR ERV1 62 834 -29 1688 269 88 22 chr15 47745860 47746451 -37949303 + MER115 DNA AcHobo 52 681 -12 333 303 147 36 chr15 47746960 47747146 -37948608 - L2 LINE L2 -1320 1994 1830 1552 174 6 48 chr15 47747146 47747457 -37948297 - AluJb SINE Alu -13 299 2 333 303 147 36 chr15 47747457 47747772 -37947982 - L2 LINE L2 -1484 1830 1437 190 267 117 0 chr15 47748018 47748078 -37947676 - L2 LINE L2 0 3313 3247 1350 187 0 101 chr15 47750747 47751094 -37944660 - AluJb SINE Alu 0 312 1 327 279 75 2 chr15 47752544 47752665 -37943089 + MIR SINE MIR 35 162 -70 356 235 30 15 chr15 47752669 47752801 -37942953 + (TA)n Simple_repeat Simple_repeat 1 134 0 190 350 29 48 chr15 47753117 47753220 -37942534 + L2 LINE L2 2634 2734 -580 1112 101 0 30 chr15 47753278 47753446 -37942308 - L1PA11 LINE L1 -3 6171 6009 243 383 33 22 chr15 47753513 47753693 -37942061 + L2 LINE L2 2831 3012 -260 222 206 0 0 chr15 47753715 47753778 -37941976 + T-rich Low_complexity Low_complexity 1 63 0 199 314 59 10 chr15 47754750 47754852 -37940902 - MIR SINE MIR -155 107 1 410 292 0 9 chr15 47754979 47755092 -37940662 - MIR3 SINE MIR -24 184 73 2401 68 37 0 chr15 47755152 47755448 -37940306 + AluSx SINE Alu 1 307 -5 2228 91 7 0 chr15 47755448 47755733 -37940021 + AluSx SINE Alu 1 287 -25 212 0 36 0 chr15 47755736 47755764 -37939990 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 652 254 54 110 chr15 47756358 47756666 -37939088 + L2 LINE L2 2835 3164 -149 748 187 0 0 chr15 47756666 47756789 -37938965 + FLAM_A SINE Alu 1 123 -10 652 254 54 110 chr15 47756789 47756930 -37938824 + L2 LINE L2 3164 3311 -2 2311 81 7 0 chr15 47757051 47757346 -37938408 - AluSp SINE Alu -16 297 1 1266 236 88 5 chr15 47757392 47757777 -37937977 - L1ME3 LINE L1 -21 6141 5725 1999 120 0 0 chr15 47757896 47758212 -37937542 + AluSq SINE Alu 16 331 0 2203 112 0 19 chr15 47759773 47760085 -37935669 - AluSx SINE Alu -6 306 1 271 297 27 0 chr15 47760260 47760334 -37935420 + L2 LINE L2 3197 3272 0 1646 110 15 133 chr15 47760584 47760921 -37934833 - AluSx SINE Alu -5 297 1 419 299 111 45 chr15 47761028 47761302 -37934452 - L1MA10 LINE L1 -8 6326 6053 1434 199 76 20 chr15 47761302 47761708 -37934046 - L1ME2 LINE L1 -141 6023 5595 348 266 19 31 chr15 47761718 47761879 -37933875 + L1MC4a LINE L1 5234 5392 -754 887 241 62 27 chr15 47761924 47762148 -37933606 + MIR SINE MIR 31 262 0 421 289 162 21 chr15 47762155 47762577 -37933177 + L1MC4a LINE L1 5414 5819 -302 1218 204 82 9 chr15 47762858 47763187 -37932567 - L1MD2 LINE L1 -30 6329 5977 2108 125 0 7 chr15 47763261 47763550 -37932204 + AluSx SINE Alu 1 287 -25 6639 248 83 63 chr15 47763821 47765821 -37929933 - L2 LINE L2 -1 3312 1353 243 61 0 0 chr15 47765821 47765854 -37929900 + (TG)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr15 47765853 47765876 -37929878 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 6639 248 83 63 chr15 47765854 47765941 -37929813 - L2 LINE L2 -1960 1353 1269 204 40 0 0 chr15 47765941 47765966 -37929788 + (GA)n Simple_repeat Simple_repeat 1 25 0 6639 248 83 63 chr15 47765966 47766290 -37929464 - L2 LINE L2 -2044 1269 953 1926 125 56 3 chr15 47766290 47766578 -37929176 + AluJb SINE Alu 1 303 -9 6639 248 83 63 chr15 47766578 47766946 -37928808 - L2 LINE L2 -2360 953 490 1216 187 152 25 chr15 47766946 47767341 -37928413 + LTR56 LTR ERV1 1 445 0 6639 248 83 63 chr15 47767341 47767492 -37928262 - L2 LINE L2 -2823 490 343 24 0 0 0 chr15 47767920 47767944 -37927810 + AT_rich Low_complexity Low_complexity 1 24 0 570 288 24 22 chr15 47768132 47768376 -37927378 - MLT1L LTR MaLR 0 615 354 268 289 64 50 chr15 47768997 47769161 -37926593 + MIR3 SINE MIR 9 176 -69 2537 159 43 64 chr15 47769181 47769741 -37926013 - MER21A LTR ERV1 -8 923 376 1146 171 86 8 chr15 47769746 47769991 -37925763 - MER21A LTR ERV1 -667 264 1 430 229 104 21 chr15 47770904 47771048 -37924706 - MIR SINE MIR -7 255 100 186 164 236 0 chr15 47771123 47771178 -37924576 - MIR SINE MIR -71 191 124 2204 118 0 3 chr15 47771340 47771653 -37924101 + AluSx SINE Alu 1 312 0 1036 127 61 0 chr15 47771653 47771818 -37923936 + AluSg/x SINE Alu 132 306 -3 1598 211 35 120 chr15 47771830 47772434 -37923320 - L1MEc LINE L1 -2346 3869 3215 4777 98 49 16 chr15 47772434 47773196 -37922558 - L1MC1 LINE L1 -1 6332 5546 1598 211 35 120 chr15 47773196 47773376 -37922378 - L1MEc LINE L1 -3000 3215 3159 1426 60 0 0 chr15 47773376 47773558 -37922196 - L1PA13 LINE L1 -2 6161 5980 1598 211 35 120 chr15 47773558 47773611 -37922143 - L1MEc LINE L1 -3056 3159 3103 2288 243 58 16 chr15 47773613 47774882 -37920872 - L1MEc LINE L1 -3263 2952 1599 2791 188 32 0 chr15 47774889 47775415 -37920339 - MER68 LTR ERV1 -19 543 1 1284 276 69 53 chr15 47775427 47776707 -37919047 - L1MEc LINE L1 -4809 1587 288 735 265 73 5 chr15 47777670 47777990 -37917764 + HERVL40 LTR ERVL 2792 5530 0 1389 209 71 18 chr15 47778709 47779091 -37916663 + LTR52 LTR ERVL 11 412 -9 2070 125 0 6 chr15 47779327 47779648 -37916106 - MER9 LTR ERVK 0 511 193 3018 78 0 19 chr15 47779749 47780171 -37915583 + L1PA7 LINE L1 5741 6154 0 21 36 0 0 chr15 47780339 47780367 -37915387 + AT_rich Low_complexity Low_complexity 1 28 0 756 153 33 20 chr15 47780370 47780520 -37915234 + MER2 DNA MER2_type 174 325 -20 502 261 58 46 chr15 47780827 47781068 -37914686 - L2 LINE L2 0 3313 3070 381 43 0 0 chr15 47781185 47781232 -37914522 + (TG)n Simple_repeat Simple_repeat 1 47 0 605 338 51 30 chr15 47781309 47781777 -37913977 - L2 LINE L2 -1069 2245 1768 1423 121 0 0 chr15 47782187 47782369 -37913385 + AluSx SINE Alu 1 182 -130 1934 109 83 0 chr15 47782410 47782686 -37913068 - AluSx SINE Alu -9 303 5 21 36 0 0 chr15 47782689 47782717 -37913037 + AT_rich Low_complexity Low_complexity 1 28 0 194 254 36 0 chr15 47782968 47783023 -37912731 + MIR SINE MIR 21 77 -131 258 266 94 70 chr15 47783302 47783558 -37912196 + L1ME4a LINE L1 5477 5738 -383 249 149 21 0 chr15 47783562 47783609 -37912145 - L1MA3 LINE L1 -204 6101 6054 1239 97 0 15 chr15 47783609 47783804 -37911950 + L1MA3 LINE L1 6112 6303 -2 319 239 87 47 chr15 47783829 47784038 -37911716 + L1ME4a LINE L1 5724 5923 -198 2406 99 6 0 chr15 47784038 47784381 -37911373 + L1PA13 LINE L1 5800 6144 -19 216 0 0 0 chr15 47784385 47784409 -37911345 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 319 239 87 47 chr15 47784409 47784470 -37911284 + L1ME4a LINE L1 5925 6010 -111 28 0 0 0 chr15 47784655 47784683 -37911071 + AT_rich Low_complexity Low_complexity 1 28 0 1028 188 0 36 chr15 47784746 47784938 -37910816 + AluJo SINE Alu 1 185 -127 228 183 17 167 chr15 47785039 47785109 -37910645 - LTR67 LTR ERVL -8 549 503 2767 22 0 6 chr15 47785109 47785429 -37910325 + AluYb8 SINE Alu 1 318 0 228 183 17 167 chr15 47785429 47785478 -37910276 - LTR67 LTR ERVL -54 503 448 224 277 62 0 chr15 47787537 47787602 -37908152 + L2 LINE L2 3158 3226 -46 410 329 100 9 chr15 47788072 47788282 -37907472 + MIR SINE MIR 15 243 -19 1030 61 0 0 chr15 47788533 47788665 -37907089 + MER85 DNA T2_type 1 132 -7 25 0 0 0 chr15 47790873 47790898 -37904856 + AT_rich Low_complexity Low_complexity 1 25 0 416 282 45 45 chr15 47791033 47791189 -37904565 + MIR3 SINE MIR 38 193 -15 3983 169 47 48 chr15 47791202 47793025 -37902729 - L1MB3 LINE L1 0 6183 4355 357 162 0 0 chr15 47793664 47793732 -37902022 + (TG)n Simple_repeat Simple_repeat 2 69 0 710 293 71 13 chr15 47793811 47794050 -37901704 + MIR SINE MIR 2 254 -8 187 189 189 0 chr15 47794233 47794270 -37901484 - L2 LINE L2 -10 3262 3219 9378 163 36 10 chr15 47794819 47796379 -37899375 + L1M4c LINE L1 22 1747 -4637 210 37 0 0 chr15 47796379 47796406 -37899348 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9378 163 36 10 chr15 47796406 47796945 -37898809 + L1M4c LINE L1 1747 2271 -4113 729 317 0 17 chr15 47796999 47797229 -37898525 + L1PA13 LINE L1 1 226 -6561 313 357 0 7 chr15 47797244 47797384 -37898370 + L1PA13 LINE L1 474 612 -6175 1390 264 11 8 chr15 47797502 47797862 -37897892 + L1PA13 LINE L1 1353 1713 -5074 2283 118 0 0 chr15 47797866 47798171 -37897583 - AluSx SINE Alu -7 305 1 21 57 0 0 chr15 47798337 47798372 -37897382 + AT_rich Low_complexity Low_complexity 1 35 0 8713 208 123 27 chr15 47799665 47799945 -37895809 + L1MD3 LINE L1 5380 5632 -2363 276 53 0 0 chr15 47799945 47799983 -37895771 + (CA)n Simple_repeat Simple_repeat 2 39 0 8713 208 123 27 chr15 47799983 47800917 -37894837 + L1MD3 LINE L1 5632 6475 -1520 2222 127 52 25 chr15 47800917 47801279 -37894475 - THE1C LTR MaLR -3 372 1 8713 208 123 27 chr15 47801279 47802449 -37893305 + L1MD3 LINE L1 6475 7995 0 896 206 126 0 chr15 47804581 47804780 -37890974 - MER58A DNA MER1_type 0 224 1 255 183 42 28 chr15 47805288 47805359 -37890395 + L1MC3 LINE L1 390 461 -5935 1501 224 67 54 chr15 47806012 47806552 -37889202 + L1MC3 LINE L1 775 1321 -5088 549 290 54 9 chr15 47806556 47806777 -37888977 + L1MC3 LINE L1 4557 4787 -1619 5232 212 165 62 chr15 47806882 47808173 -37887581 + L1MC3 LINE L1 5923 7539 -506 283 232 29 14 chr15 47808173 47808242 -37887512 + MLT1F1 LTR MaLR 53 122 -445 5232 212 165 62 chr15 47808242 47808804 -37886950 + L1MC3 LINE L1 7539 8042 -3 2973 238 49 16 chr15 47808802 47809602 -37886152 + L1ME1 LINE L1 5318 6143 -23 * 22 70 0 0 chr15 47809604 47809647 -37886107 + AT_rich Low_complexity Low_complexity 1 43 0 2365 109 0 6 chr15 47810037 47810350 -37885404 + AluSx SINE Alu 1 311 -1 1627 201 0 3 chr15 47812402 47812690 -37883064 + AluJo SINE Alu 1 287 -25 555 257 56 0 chr15 47813069 47813213 -37882541 + MER5B DNA MER1_type 5 156 -22 341 269 161 0 chr15 47813229 47813359 -37882395 + MIR3 SINE MIR 23 173 -35 1336 233 153 50 chr15 47813971 47814088 -37881666 + MLT1E LTR MaLR 2 106 -487 956 124 0 36 chr15 47814088 47814225 -37881529 + FLAM_C SINE Alu 1 132 -1 1336 233 153 50 chr15 47814225 47814644 -37881110 + MLT1E LTR MaLR 106 593 0 1180 263 127 18 chr15 47814975 47815421 -37880333 + L2 LINE L2 1564 1960 -1353 9795 100 12 4 chr15 47815421 47816697 -37879057 - HSMAR1 DNA Mariner 0 1287 1 1180 263 127 18 chr15 47816697 47817108 -37878646 + L2 LINE L2 1960 3313 0 308 360 8 16 chr15 47817853 47817978 -37877776 - MIR SINE MIR -66 142 19 819 197 70 0 chr15 47819154 47819296 -37876458 + MER96 DNA MER1_type? 11 162 -13 1342 128 5 0 chr15 47819488 47819676 -37876078 + AluSg/x SINE Alu 108 296 -16 349 345 40 17 chr15 47819925 47820099 -37875655 + L2 LINE L2 2882 3059 -213 480 340 44 0 chr15 47820227 47820386 -37875368 - L2 LINE L2 -1 3271 3106 512 248 62 7 chr15 47821270 47821415 -37874339 + MIR SINE MIR 92 244 -18 500 269 28 0 chr15 47821960 47822068 -37873686 + MIR SINE MIR 36 146 -62 200 314 0 0 chr15 47822189 47822240 -37873514 - MIR SINE MIR -117 91 41 210 300 100 0 chr15 47823161 47823251 -37872503 + MIR SINE MIR 132 230 -32 212 263 53 0 chr15 47823760 47823817 -37871937 - MIR SINE MIR -87 175 116 242 224 0 13 chr15 47823824 47823900 -37871854 + (CATA)n Simple_repeat Simple_repeat 4 78 0 3107 132 37 51 chr15 47823914 47824209 -37871545 + MER4B LTR ERV1 1 299 -480 261 0 0 0 chr15 47824209 47824238 -37871516 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2131 124 0 0 chr15 47824240 47824523 -37871231 - AluSx SINE Alu -29 283 1 3107 132 37 51 chr15 47824523 47824832 -37870922 + MER4B LTR ERV1 300 770 -9 252 0 0 0 chr15 47824847 47824875 -37870879 + (CA)n Simple_repeat Simple_repeat 2 29 0 245 282 73 32 chr15 47825028 47825152 -37870602 + MER5A DNA MER1_type 30 158 -31 * 330 305 46 15 chr15 47825045 47825176 -37870578 - MER5A DNA MER1_type -36 153 19 764 161 0 0 chr15 47825388 47825512 -37870242 + MER4B LTR ERV1 181 304 -306 198 0 0 0 chr15 47825597 47825619 -37870135 + (CCCCCA)n Simple_repeat Simple_repeat 6 27 0 1608 194 0 0 chr15 47825966 47826234 -37869520 - AluJo SINE Alu -44 268 1 517 124 22 11 chr15 47826256 47826345 -37869409 + L1MDa LINE L1 625 714 -5826 1173 167 63 5 chr15 47826357 47826578 -37869176 + L1MD1 LINE L1 5999 6232 -10 288 233 57 97 chr15 47826945 47827156 -37868598 - L1MC/D LINE L1 -744 5421 5291 303 304 144 37 chr15 47827298 47827597 -37868157 - L1MC/D LINE L1 -913 5233 4903 23 54 0 0 chr15 47827606 47827643 -37868111 + AT_rich Low_complexity Low_complexity 1 37 0 284 222 0 0 chr15 47827683 47827755 -37867999 + (TA)n Simple_repeat Simple_repeat 2 73 0 456 288 68 74 chr15 47827906 47828378 -37867376 - L1MC/D LINE L1 -2157 3989 3521 1941 93 0 0 chr15 47828451 47828688 -37867066 - AluSc SINE Alu -72 237 1 21 0 0 0 chr15 47831300 47831321 -37864433 + AT_rich Low_complexity Low_complexity 1 21 0 270 208 42 56 chr15 47831329 47831352 -37864402 - L1MA10 LINE L1 -63 6271 6249 2181 194 75 43 chr15 47831352 47831884 -37863870 + MER44D DNA MER2_type 1 604 -1 270 208 42 56 chr15 47831884 47831932 -37863822 - L1MA10 LINE L1 -85 6249 6201 25 51 0 0 chr15 47832053 47832092 -37863662 + AT_rich Low_complexity Low_complexity 1 39 0 3209 206 18 7 chr15 47832102 47832722 -37863032 + MER82 DNA MER2_type 27 653 0 292 315 33 0 chr15 47833074 47833166 -37862588 + MIR SINE MIR 48 142 -120 261 300 11 11 chr15 47834669 47834759 -37860995 + L2 LINE L2 3183 3272 0 4768 135 8 30 chr15 47836041 47836746 -37859008 - L1MB3 LINE L1 -3 6180 5492 2189 128 3 0 chr15 47836746 47837051 -37858703 - AluSx SINE Alu -6 306 1 4768 135 8 30 chr15 47837051 47837109 -37858645 - L1MB3 LINE L1 -691 5492 5434 651 227 92 38 chr15 47837161 47837346 -37858408 + MIR SINE MIR 2 196 -66 294 326 21 59 chr15 47837418 47837654 -37858100 - L2 LINE L2 -2125 1189 963 241 321 93 49 chr15 47837834 47837996 -37857758 - MIR SINE MIR -36 226 58 224 189 0 0 chr15 47838968 47839005 -37856749 + (CCCCG)n Simple_repeat Simple_repeat 3 39 0 185 238 159 32 chr15 47839151 47839214 -37856540 - MIR SINE MIR -63 145 75 340 260 150 40 chr15 47839222 47839395 -37856359 - L2 LINE L2 -4 3309 3118 2302 97 0 0 chr15 47839482 47839782 -37855972 - AluSx SINE Alu -11 301 2 200 245 47 7 chr15 47839908 47839984 -37855770 + MIR SINE MIR 36 116 -92 32 26 0 0 chr15 47840132 47840171 -37855583 + GC_rich Low_complexity Low_complexity 1 39 0 365 259 76 30 chr15 47840439 47840570 -37855184 - MIR3 SINE MIR -14 194 58 223 224 224 0 chr15 47840558 47840634 -37855120 - MIR SINE MIR -4 258 166 * 2300 92 23 0 chr15 47840761 47841066 -37854688 - AluSq SINE Alu -1 312 1 1079 234 74 106 chr15 47841135 47841310 -37854444 - Charlie7 DNA MER1_type -1923 689 510 839 40 0 104 chr15 47841310 47841435 -37854319 - L1MA2 LINE L1 -2 6302 6191 1079 234 74 106 chr15 47841435 47841814 -37853940 - Charlie7 DNA MER1_type -2102 510 155 1574 146 13 76 chr15 47841814 47842138 -37853616 - AluJo SINE Alu 0 305 1 1079 234 74 106 chr15 47842138 47842230 -37853524 - Charlie7 DNA MER1_type -2457 155 62 462 260 202 6 chr15 47843305 47843478 -37852276 + MIR SINE MIR 50 256 -6 304 272 35 18 chr15 47843615 47843729 -37852025 - MIR SINE MIR -85 177 62 533 321 183 30 chr15 47844529 47845260 -37850494 - L2 LINE L2 -2 3270 2426 433 317 75 11 chr15 47845341 47845527 -37850227 + MIR SINE MIR 29 226 -36 370 334 107 51 chr15 47846078 47846509 -37849245 - L2 LINE L2 -1 3271 2817 401 266 62 47 chr15 47847370 47847680 -37848074 - L1ME4a LINE L1 -38 6083 5772 1845 113 64 35 chr15 47847770 47848053 -37847701 - AluSx SINE Alu -17 295 5 180 333 111 20 chr15 47848343 47848442 -37847312 + MIR SINE MIR 18 125 -83 1409 232 59 32 chr15 47848474 47848828 -37846926 + Charlie4a DNA MER1_type 43 413 -1548 1753 81 0 25 chr15 47848828 47849064 -37846690 - MER30 DNA MER1_type 0 230 1 1409 232 59 32 chr15 47849064 47849148 -37846606 + Charlie4a DNA MER1_type 413 493 -15 231 204 0 41 chr15 47849277 47849326 -37846428 - L2 LINE L2 -2 3270 3224 310 349 77 67 chr15 47850112 47850321 -37845433 + MIR SINE MIR 20 230 -32 356 263 44 0 chr15 47850859 47850973 -37844781 + L1ME4a LINE L1 5545 5663 -458 2319 92 0 3 chr15 47850977 47851270 -37844484 + AluSc SINE Alu 1 292 -17 842 249 91 21 chr15 47851308 47851549 -37844205 - L2 LINE L2 -2 3311 3054 266 283 43 33 chr15 47851556 47851740 -37844014 + L1ME4a LINE L1 5718 5903 -218 495 242 102 30 chr15 47852253 47852517 -37843237 + MER113 DNA MER1_type? 4 286 -235 303 93 0 0 chr15 47852535 47852578 -37843176 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 862 132 6 28 chr15 47852582 47852764 -37842990 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 392 176 59 42 chr15 47852800 47852919 -37842835 + MER113 DNA MER1_type? 304 424 -97 238 239 41 147 chr15 47853313 47853510 -37842244 - L2 LINE L2 -157 3115 2940 396 262 12 0 chr15 47853545 47853629 -37842125 - MER63 DNA MER1_type -10 1052 968 368 196 113 10 chr15 47853636 47853733 -37842021 - MER63 DNA MER1_type -329 733 1 315 302 24 16 chr15 47854663 47854789 -37840965 + CT-rich Low_complexity Low_complexity 1 127 0 2121 155 0 0 chr15 47855324 47855634 -37840120 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr15 47855634 47855663 -37840091 + AT_rich Low_complexity Low_complexity 1 29 0 276 278 102 18 chr15 47855802 47855957 -37839797 + MIR SINE MIR 19 184 -63 1285 170 9 5 chr15 47856266 47856478 -37839276 - AluJb SINE Alu -13 299 87 26 50 0 0 chr15 47856680 47856720 -37839034 + AT_rich Low_complexity Low_complexity 1 40 0 482 293 15 30 chr15 47856750 47856883 -37838871 + MER5A DNA MER1_type 49 179 -10 1982 176 2 35 chr15 47856893 47857296 -37838458 - L1ME1 LINE L1 -9 6157 5768 614 218 46 35 chr15 47857296 47857493 -37838261 - L1MEc LINE L1 -4534 1862 1664 1848 93 13 0 chr15 47857522 47857759 -37837995 - AluSq SINE Alu -71 242 3 1004 283 72 58 chr15 47857759 47858452 -37837302 - L1MEc LINE L1 -5633 763 61 1669 175 49 0 chr15 47858463 47858748 -37837006 - AluJb SINE Alu -13 299 1 1830 169 7 20 chr15 47859010 47859311 -37836443 + AluJo SINE Alu 6 302 -10 21 0 0 0 chr15 47859975 47859996 -37835758 + AT_rich Low_complexity Low_complexity 1 21 0 701 262 43 33 chr15 47860255 47860465 -37835289 + MIR SINE MIR 44 255 -7 202 286 11 22 chr15 47860466 47860557 -37835197 + (TAG)n Simple_repeat Simple_repeat 3 92 0 395 320 5 29 chr15 47860557 47860763 -37834991 - L1ME LINE L1 -304 5817 5617 831 130 73 0 chr15 47862018 47862141 -37833613 + FLAM_C SINE Alu 1 132 -11 224 283 61 30 chr15 47862150 47862249 -37833505 + MIR SINE MIR 149 250 -12 292 282 13 0 chr15 47862771 47862849 -37832905 + MIR3 SINE MIR 118 196 -12 323 286 10 10 chr15 47862859 47862957 -37832797 - MIR3 SINE MIR -15 193 96 335 275 14 36 chr15 47864362 47864487 -37831267 - MER5A DNA MER1_type -12 166 51 272 286 186 21 chr15 47864720 47864860 -37830894 + MIR SINE MIR 56 218 -44 399 248 37 9 chr15 47867444 47867553 -37828201 + MIR SINE MIR 33 144 -64 25 31 0 0 chr15 47867717 47867749 -37828005 + AT_rich Low_complexity Low_complexity 1 32 0 275 247 0 41 chr15 47868862 47868935 -37826819 - MER104 DNA Tc2 -77 103 34 1642 171 19 29 chr15 47868964 47869132 -37826622 - AluJo SINE Alu -6 306 141 1967 151 0 37 chr15 47869132 47869456 -37826298 - AluJb SINE Alu 0 312 1 1642 171 19 29 chr15 47869456 47869596 -37826158 - AluJo SINE Alu -171 141 1 182 296 123 25 chr15 47869688 47869850 -37825904 - L2 LINE L2 -329 2984 2807 250 207 69 0 chr15 47869893 47869951 -37825803 - MER94 DNA DNA -72 62 1 208 311 33 11 chr15 47869951 47870041 -37825713 - L2 LINE L2 -513 2801 2710 2157 124 7 0 chr15 47870265 47870564 -37825190 - AluSx SINE Alu -11 301 1 220 313 48 0 chr15 47871617 47871700 -37824054 - L2 LINE L2 -611 2703 2617 245 244 158 24 chr15 47872343 47872425 -37823329 - MER5B DNA MER1_type -80 98 6 182 114 0 29 chr15 47873669 47873704 -37822050 + (TTTCC)n Simple_repeat Simple_repeat 2 35 0 2332 125 3 0 chr15 47873704 47874016 -37821738 - AluSq SINE Alu 0 313 1 349 273 75 25 chr15 47874253 47874414 -37821340 + L1ME4a LINE L1 5947 6115 -6 258 109 22 22 chr15 47874519 47874565 -37821189 - L3 LINE CR1 -14 1563 1518 1041 52 20 13 chr15 47874988 47875141 -37820613 + (TTCC)n Simple_repeat Simple_repeat 4 157 0 1931 163 134 29 chr15 47875526 47875975 -37819779 + MLT1D LTR MaLR 10 505 0 306 374 41 7 chr15 47876856 47877003 -37818751 + MIR SINE MIR 63 214 -48 364 341 84 17 chr15 47878050 47878346 -37817408 - L2 LINE L2 -814 2500 2185 503 278 109 48 chr15 47878787 47879035 -37816719 + MLT1K LTR MaLR 326 588 0 1181 152 0 21 chr15 47879454 47879645 -37816109 + AluJb SINE Alu 126 312 0 337 342 8 0 chr15 47879872 47879992 -37815762 - MIR SINE MIR 0 262 142 327 25 0 0 chr15 47880410 47880450 -37815304 + (TG)n Simple_repeat Simple_repeat 2 41 0 455 217 80 58 chr15 47880940 47881078 -37814676 + L2 LINE L2 3163 3303 -10 489 175 32 8 chr15 47881089 47881215 -37814539 + GA-rich Low_complexity Low_complexity 2 130 0 2665 239 71 27 chr15 47882255 47883132 -37812622 + L1ME3A LINE L1 5241 6162 -8 1531 188 55 0 chr15 47883161 47883454 -37812300 + AluJb SINE Alu 1 309 -3 725 245 118 29 chr15 47883561 47883875 -37811879 - LTR16A LTR ERVL -93 357 16 194 235 135 90 chr15 47884053 47884253 -37811501 + L2 LINE L2 2905 3113 -159 567 174 18 24 chr15 47884593 47884760 -37810994 + GA-rich Low_complexity Low_complexity 1 166 0 204 323 20 10 chr15 47885348 47885447 -37810307 + (CATG)n Simple_repeat Simple_repeat 1 100 0 267 331 118 42 chr15 47885529 47885961 -37809793 + L2 LINE L2 2513 2977 -337 439 272 82 38 chr15 47886980 47887138 -37808616 - MIR SINE MIR -37 225 61 254 237 53 13 chr15 47887178 47887254 -37808500 - LTR67 LTR ERVL -1 556 478 296 189 0 0 chr15 47887532 47887585 -37808169 - MLT1K LTR MaLR -519 69 17 782 178 15 0 chr15 47887933 47888068 -37807686 - AluJo SINE Alu -174 138 2 727 169 23 8 chr15 47888101 47888231 -37807523 + L2 LINE L2 3180 3311 -2 * 845 297 38 59 chr15 47888205 47888953 -37806801 - L2 LINE L2 -10 3303 2565 387 307 29 83 chr15 47889850 47890110 -37805644 - MIR SINE MIR -12 250 5 246 81 0 0 chr15 47890737 47890774 -37804980 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 262 319 149 57 chr15 47891164 47891500 -37804254 - L2 LINE L2 -2 3270 2904 218 184 0 0 chr15 47891799 47891837 -37803917 + (CA)n Simple_repeat Simple_repeat 1 38 0 2196 234 32 26 chr15 47892278 47892846 -37802908 + MER90 LTR ERV1 5 575 0 303 286 0 0 chr15 47892931 47893001 -37802753 + MER5B DNA MER1_type 102 171 -7 289 295 45 70 chr15 47893336 47893536 -37802218 + L2 LINE L2 2637 2831 -483 241 328 95 0 chr15 47893607 47893723 -37802031 + L2 LINE L2 2934 3060 -212 508 291 80 47 chr15 47893892 47894105 -37801649 + MIR SINE MIR 16 235 -27 709 190 145 0 chr15 47894163 47894319 -37801435 - MER5A DNA MER1_type -4 185 4 185 346 59 30 chr15 47894328 47894429 -37801325 + L2 LINE L2 3169 3272 0 380 281 35 35 chr15 47895265 47895379 -37800375 + MER5A DNA MER1_type 18 131 -58 964 191 51 6 chr15 47895557 47895735 -37800019 - MER5A DNA MER1_type 0 189 4 555 270 11 11 chr15 47896347 47896521 -37799233 - Charlie8 DNA MER1_type -2152 265 92 261 254 227 73 chr15 47897031 47897071 -37798683 + MLT1H1 LTR MaLR 302 334 -221 2435 72 16 7 chr15 47897071 47897375 -37798379 + AluSp SINE Alu 1 307 -6 261 254 227 73 chr15 47897375 47897554 -37798200 + MLT1H1 LTR MaLR 334 555 0 266 253 42 21 chr15 47897578 47897673 -37798081 - MLT1L LTR MaLR -4 611 515 187 304 29 14 chr15 47898376 47898445 -37797309 - L3 LINE CR1 -1 1576 1507 347 369 107 0 chr15 47898448 47898635 -37797119 - MIR SINE MIR 0 262 56 474 277 182 18 chr15 47898692 47898912 -37796842 - L3 LINE CR1 -141 1436 1181 393 282 115 23 chr15 47899047 47899414 -37796340 - Charlie8 DNA MER1_type -2131 286 10 548 310 79 41 chr15 47899428 47899744 -37796010 - L3 LINE CR1 -483 1094 767 1323 115 14 43 chr15 47899851 47900060 -37795694 + AluJo SINE Alu 87 289 -23 193 306 264 0 chr15 47900732 47900853 -37794901 + MIR SINE MIR 104 256 -6 520 276 106 6 chr15 47901057 47901227 -37794527 + MIR SINE MIR 60 246 -16 210 37 0 0 chr15 47901499 47901526 -37794228 + (CA)n Simple_repeat Simple_repeat 2 28 0 429 288 70 27 chr15 47901547 47901638 -37794116 - L1MC4a LINE L1 -1897 5911 5825 2096 129 5 89 chr15 47901638 47901820 -37793934 + MLT1B LTR MaLR 1 128 -262 2156 110 3 3 chr15 47901820 47902110 -37793644 + AluSx SINE Alu 1 290 -22 2096 129 5 89 chr15 47902110 47902353 -37793401 + MLT1B LTR MaLR 128 390 0 429 288 70 27 chr15 47902353 47902560 -37793194 - L1MC4a LINE L1 -1983 5825 5600 25 0 0 0 chr15 47903102 47903127 -37792627 + AT_rich Low_complexity Low_complexity 1 25 0 266 364 34 34 chr15 47904513 47904749 -37791005 + L2 LINE L2 2828 3063 -209 286 329 171 6 chr15 47905576 47905740 -37790014 - MIR SINE MIR -12 250 60 1239 174 4 26 chr15 47905746 47905976 -37789778 - AluJb SINE Alu -12 300 76 587 101 0 0 chr15 47906066 47906145 -37789609 - AluJb SINE Alu -231 81 3 484 318 111 0 chr15 47906580 47906769 -37788985 + MIR SINE MIR 47 256 -6 348 154 242 0 chr15 47907086 47907177 -37788577 - L2 LINE L2 -1515 1799 1687 470 239 216 0 chr15 47907378 47907554 -37788200 + MIR SINE MIR 49 262 0 581 160 67 8 chr15 47908026 47908145 -37787609 + MER5A DNA MER1_type 41 166 -23 405 281 169 0 chr15 47908297 47908475 -37787279 + MIR SINE MIR 37 244 -18 445 319 0 0 chr15 47909291 47909407 -37786347 + MIR SINE MIR 33 148 -114 183 129 0 0 chr15 47909416 47909447 -37786307 + (CA)n Simple_repeat Simple_repeat 2 32 0 1129 151 55 55 chr15 47910351 47910623 -37785131 - ORSL DNA AcHobo 0 275 4 188 234 128 53 chr15 47910652 47910746 -37785008 + MIR SINE MIR 31 131 -77 334 219 29 7 chr15 47911546 47911683 -37784071 + CT-rich Low_complexity Low_complexity 3 142 0 2181 129 0 0 chr15 47912214 47912523 -37783231 + AluSx SINE Alu 1 309 -3 210 71 0 0 chr15 47912526 47912554 -37783200 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 184 338 213 0 chr15 47912911 47912991 -37782763 - MIR SINE MIR -67 141 45 388 297 61 20 chr15 47913184 47913332 -37782422 + MER5A DNA MER1_type 33 186 -3 625 247 59 51 chr15 47913674 47914003 -37781751 - MLT1J LTR MaLR -145 305 9 204 347 27 27 chr15 47914006 47914081 -37781673 + L2 LINE L2 3103 3177 -95 195 125 0 0 chr15 47914218 47914250 -37781504 + MIR SINE MIR 96 127 -135 * 597 253 65 0 chr15 47914248 47914402 -37781352 - MIR3 SINE MIR -3 205 42 181 279 0 0 chr15 47914461 47914504 -37781250 + L3 LINE CR1 1525 1567 -10 239 236 7 76 chr15 47914904 47915043 -37780711 - MIR SINE MIR 0 262 70 247 237 72 129 chr15 47915557 47915704 -37780050 + L1ME4a LINE L1 5726 5880 -241 1695 140 10 70 chr15 47915704 47916018 -37779736 + AluJb SINE Alu 3 297 -15 247 237 72 129 chr15 47916018 47916287 -37779467 + L1ME4a LINE L1 5880 6118 -3 25 0 0 0 chr15 47916292 47916317 -37779437 + AT_rich Low_complexity Low_complexity 1 25 0 399 181 86 86 chr15 47917412 47917517 -37778237 + MIR3 SINE MIR 72 176 -32 2959 66 0 0 chr15 47917655 47918034 -37777720 - L1PA7 LINE L1 -3 6151 5773 266 241 202 33 chr15 47918046 47918111 -37777643 - MIR3 SINE MIR -54 208 155 1513 247 117 33 chr15 47918111 47918658 -37777096 - MLT1G1 LTR MaLR 0 595 3 266 241 202 33 chr15 47918658 47918782 -37776972 - MIR3 SINE MIR -107 155 2 211 372 58 36 chr15 47919339 47919613 -37776141 - L2 LINE L2 -2 3270 2991 1620 219 121 33 chr15 47920448 47921020 -37774734 - MLT1E2 LTR MaLR -2 624 3 497 231 19 0 chr15 47921084 47921188 -37774566 - L2 LINE L2 -1 3271 3166 2176 116 0 0 chr15 47921296 47921589 -37774165 - AluSq SINE Alu -20 293 1 21 0 0 0 chr15 47921653 47921674 -37774080 + AT_rich Low_complexity Low_complexity 1 21 0 236 193 57 91 chr15 47921728 47921816 -37773938 + MLT1J2 LTR MaLR 362 446 -4 960 264 46 39 chr15 47922824 47923236 -37772518 + L1MEc LINE L1 1884 2277 -3938 1691 165 18 4 chr15 47923236 47923509 -37772245 - AluJb SINE Alu -12 300 24 960 264 46 39 chr15 47923509 47923812 -37771942 + L1MEc LINE L1 2277 2576 -3639 453 243 54 32 chr15 47923979 47924164 -37771590 + L1MEc LINE L1 1726 1914 -4482 1254 241 51 30 chr15 47924190 47924472 -37771282 + L1MEc LINE L1 2093 2365 -3850 2146 121 7 10 chr15 47924472 47924778 -37770976 + AluSx SINE Alu 1 305 -7 1254 241 51 30 chr15 47924778 47925060 -37770694 + L1MEc LINE L1 2365 2640 -3575 1228 191 22 0 chr15 47925281 47925512 -37770242 - MLT1D LTR MaLR 0 505 270 2361 66 0 0 chr15 47925831 47926117 -37769637 - AluY SINE Alu -15 296 11 2134 127 3 10 chr15 47926327 47926634 -37769120 - AluSg SINE Alu -5 305 1 211 214 0 0 chr15 47926997 47927039 -37768715 + (TATG)n Simple_repeat Simple_repeat 4 45 0 221 196 20 20 chr15 47928460 47928511 -37767243 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2381 86 0 3 chr15 47928519 47928823 -37766931 - AluSq SINE Alu -10 303 1 22 0 0 0 chr15 47928828 47928850 -37766904 + AT_rich Low_complexity Low_complexity 1 22 0 2470 99 0 0 chr15 47929640 47929952 -37765802 - AluSx SINE Alu 0 312 1 453 287 186 0 chr15 47930024 47930191 -37765563 - MIR SINE MIR -19 243 46 1758 193 70 20 chr15 47930330 47930787 -37764967 - L1ME1 LINE L1 -4 6162 5683 329 281 60 78 chr15 47931213 47931380 -37764374 - MIR SINE MIR -58 204 41 251 228 185 22 chr15 47931366 47931458 -37764296 + MIR SINE MIR 111 217 -45 * 2252 95 3 16 chr15 47931857 47932163 -37763591 + AluSx SINE Alu 1 302 -10 197 324 103 21 chr15 47932850 47932995 -37762759 + MIR SINE MIR 17 173 -89 860 268 107 56 chr15 47933577 47933988 -37761766 + MLT1J LTR MaLR 1 432 -79 689 201 148 19 chr15 47934306 47934515 -37761239 + L1MC5 LINE L1 6993 7228 -733 663 12 0 0 chr15 47934775 47934859 -37760895 + AluYa5/8 SINE Alu 228 311 0 403 319 42 79 chr15 47935181 47935602 -37760152 + HAL1b LINE L1 49 326 -1005 264 100 0 0 chr15 47935602 47935642 -37760112 + (CAT)n Simple_repeat Simple_repeat 2 41 0 403 319 42 79 chr15 47935642 47935719 -37760035 + HAL1b LINE L1 326 404 -927 287 290 93 12 chr15 47935752 47935914 -37759840 + HAL1b LINE L1 424 598 -733 869 223 11 0 chr15 47936201 47936385 -37759369 + MER5A DNA MER1_type 1 186 -3 248 342 18 9 chr15 47936533 47936644 -37759110 + MIR SINE MIR 110 221 -41 1850 159 3 44 chr15 47937313 47937633 -37758121 + AluJo SINE Alu 6 312 0 203 161 0 0 chr15 47937637 47937668 -37758086 + polypurine Low_complexity Low_complexity 2 32 0 27 0 0 0 chr15 47939027 47939054 -37756700 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr15 47941289 47941314 -37754440 + AT_rich Low_complexity Low_complexity 1 25 0 615 196 207 4 chr15 47941601 47941784 -37753970 - MIR SINE MIR -16 246 30 472 262 191 10 chr15 47941898 47942124 -37753630 + MIR SINE MIR 2 262 0 517 260 42 43 chr15 47942397 47942603 -37753151 - MIR SINE MIR -25 183 27 1288 204 60 14 chr15 47942757 47943041 -37752713 + AluJo SINE Alu 1 297 -5 210 244 199 61 chr15 47943893 47944024 -37751730 - MIR SINE MIR -76 186 38 4764 138 59 58 chr15 47944253 47945503 -37750251 + L1MA9 LINE L1 5067 6312 0 234 331 100 25 chr15 47945586 47945746 -37750008 - L2 LINE L2 -1158 2156 1985 1525 119 204 0 chr15 47946218 47946512 -37749242 + MER46B DNA MER2_type 8 236 0 2179 121 3 3 chr15 47948953 47949260 -37746494 + AluSx SINE Alu 1 307 -5 911 164 6 40 chr15 47951160 47951250 -37744504 - MER119 DNA MER1_type 0 583 500 1225 205 35 4 chr15 47951250 47951479 -37744275 - MER46A DNA MER2_type 0 236 1 911 164 6 40 chr15 47951479 47951565 -37744189 - MER119 DNA MER1_type -83 500 413 2628 235 113 16 chr15 47951573 47952343 -37743411 + L2 LINE L2 1884 2728 -586 723 298 95 3 chr15 47952735 47953071 -37742683 - HAL1 LINE L1 -832 1675 1309 228 206 32 16 chr15 47953062 47953125 -37742629 - HAL1 LINE L1 -1482 1025 962 * 24 32 0 0 chr15 47953398 47953429 -37742325 + AT_rich Low_complexity Low_complexity 1 31 0 1938 166 10 3 chr15 47953448 47953807 -37741947 - AluSx SINE Alu 0 361 1 1230 149 0 0 chr15 47954487 47954668 -37741086 + AluJb SINE Alu 1 181 -131 396 224 21 99 chr15 47954823 47955015 -37740739 - MER104 DNA MER2_type -3 177 1 221 395 0 0 chr15 47955497 47955583 -37740171 - L3 LINE CR1 -24 1553 1468 856 203 17 14 chr15 47956083 47956293 -37739461 + L1M4 LINE L1 5149 5362 -794 294 255 109 82 chr15 47957552 47957736 -37738018 + MER5A DNA MER1_type 1 189 0 210 44 44 22 chr15 47957904 47957949 -37737805 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 834 148 7 40 chr15 47957961 47958110 -37737644 - MER1B DNA MER1_type 0 339 196 2110 111 0 10 chr15 47958570 47958867 -37736887 - AluSq SINE Alu -18 295 2 455 310 107 5 chr15 47959533 47959720 -37736034 + MIR SINE MIR 37 242 -20 24 0 0 0 chr15 47960397 47960421 -37735333 + GC_rich Low_complexity Low_complexity 1 24 0 1714 73 43 13 chr15 47961399 47961632 -37734122 - AluY SINE Alu -2 309 70 440 175 62 0 chr15 47961732 47961829 -37733925 - L1MA4 LINE L1 -13 6287 6185 233 191 0 21 chr15 47961841 47961888 -37733866 - L2 LINE L2 -5 3308 3263 196 406 49 0 chr15 47962133 47962256 -37733498 - L2 LINE L2 -426 2888 2760 220 236 83 28 chr15 47962312 47962384 -37733370 - MIR SINE MIR -98 164 89 275 321 25 44 chr15 47962464 47962623 -37733131 - L2 LINE L2 -609 2705 2550 2518 57 0 3 chr15 47962817 47963117 -37732637 + AluY SINE Alu 1 299 -12 181 327 36 0 chr15 47963437 47963492 -37732262 + L2 LINE L2 3158 3214 -58 1565 197 111 31 chr15 47964085 47964537 -37731217 - Charlie4a DNA MER1_type -20 488 1 347 56 130 0 chr15 47964673 47964727 -37731027 + MER2 DNA MER2_type 78 138 -207 245 284 62 0 chr15 47966108 47966189 -37729565 + L1ME LINE L1 5626 5711 -459 1184 189 133 30 chr15 47966336 47966606 -37729148 - AluJb SINE Alu -3 299 2 373 198 186 0 chr15 47966646 47966732 -37729022 + MER46A DNA MER2_type 45 146 -90 459 208 0 0 chr15 47966746 47966818 -37728936 + AluJ/FLAM SINE Alu 2 73 -239 394 212 17 0 chr15 47966863 47966945 -37728809 + AluJ/FRAM SINE Alu 218 285 -17 511 172 0 11 chr15 47966977 47967070 -37728684 + MER46A DNA MER2_type 145 236 0 1057 188 53 14 chr15 47967685 47967893 -37727861 - U3 snRNA snRNA -1 216 1 1020 124 43 19 chr15 47967902 47968063 -37727691 - FRAM SINE Alu -1 165 1 240 100 0 0 chr15 47968225 47968265 -37727489 + (T)n Simple_repeat Simple_repeat 1 40 0 2336 109 0 0 chr15 47968439 47968751 -37727003 - AluSx SINE Alu 0 312 1 849 112 0 22 chr15 47969198 47969332 -37726422 + AluJo SINE Alu 6 136 -176 204 232 85 10 chr15 47969625 47969711 -37726043 + MIR SINE MIR 33 119 -89 1795 153 14 21 chr15 47969736 47970024 -37725730 - AluJb SINE Alu -26 286 1 801 157 0 102 chr15 47970266 47970432 -37725322 - AluJb SINE Alu -6 306 158 275 159 45 0 chr15 47970740 47970784 -37724970 + AluJ/FRAM SINE Alu 229 274 -28 2007 89 19 0 chr15 47970784 47971055 -37724699 + AluSx SINE Alu 35 310 -2 243 286 101 17 chr15 47971084 47971203 -37724551 + L2 LINE L2 3172 3300 -13 2270 83 3 0 chr15 47971243 47971564 -37724190 + AluSp SINE Alu 1 322 0 1925 98 76 0 chr15 47972190 47972465 -37723289 - AluSp SINE Alu -17 296 1 232 118 20 20 chr15 47973396 47973447 -37722307 + CT-rich Low_complexity Low_complexity 2 52 0 1653 149 49 42 chr15 47973447 47973755 -37721999 - AluJb SINE Alu 0 312 3 238 146 0 0 chr15 47973855 47973896 -37721858 + Alu SINE Alu 123 163 -3 1308 148 0 32 chr15 47973897 47974113 -37721641 + AluJo SINE Alu 85 293 -19 2077 81 33 0 chr15 47974205 47974477 -37721277 + AluSp SINE Alu 1 281 -32 2027 108 35 0 chr15 47974661 47974947 -37720807 + AluSp SINE Alu 1 296 -17 271 250 71 0 chr15 47975183 47975267 -37720487 - L2 LINE L2 -1 3271 3182 25 31 0 0 chr15 47975602 47975634 -37720120 + AT_rich Low_complexity Low_complexity 1 32 0 271 171 43 14 chr15 47976162 47976232 -37719522 + (TA)n Simple_repeat Simple_repeat 1 72 0 21 0 0 0 chr15 47978619 47978640 -37717114 + AT_rich Low_complexity Low_complexity 1 21 0 1751 171 7 10 chr15 47979598 47979716 -37716038 + AluJb SINE Alu 1 118 -194 212 0 36 0 chr15 47979716 47979744 -37716010 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1751 171 7 10 chr15 47979744 47979917 -37715837 + AluJb SINE Alu 118 291 -21 1711 173 50 10 chr15 47980079 47980379 -37715375 + AluJb SINE Alu 1 312 0 448 230 208 76 chr15 47981486 47981651 -37714103 + L1MC4 LINE L1 7537 7679 -363 1678 167 35 3 chr15 47981651 47981938 -37713816 + AluJb SINE Alu 6 301 -11 448 230 208 76 chr15 47981938 47982219 -37713535 + L1MC4 LINE L1 7679 8042 0 189 296 19 0 chr15 47984294 47984348 -37711406 - L2 LINE L2 -8 3264 3210 1906 148 21 0 chr15 47984593 47984884 -37710870 - AluJb SINE Alu -15 297 1 1201 81 0 0 chr15 47984893 47985042 -37710712 - AluSq SINE Alu -19 294 146 258 321 64 14 chr15 47985506 47985646 -37710108 + MIR SINE MIR 47 193 -69 2458 86 0 0 chr15 47985666 47985968 -37709786 + AluSg SINE Alu 1 302 -8 405 235 22 59 chr15 47985979 47986115 -37709639 - MIR SINE MIR -12 250 120 2278 102 0 0 chr15 47986370 47986664 -37709090 + AluSx SINE Alu 1 294 -18 786 193 56 31 chr15 47987370 47987531 -37708223 - AluJb SINE Alu -17 295 131 1791 139 34 10 chr15 47987771 47988066 -37707688 - AluJb SINE Alu -8 304 3 1618 190 10 16 chr15 47988200 47988510 -37707244 + AluJo SINE Alu 1 308 -4 511 302 43 0 chr15 47988895 47989034 -37706720 + L2 LINE L2 3122 3266 -6 2146 108 3 19 chr15 47989116 47989432 -37706322 - AluSx SINE Alu 0 312 2 2276 94 7 0 chr15 47989542 47989830 -37705924 - AluSc SINE Alu -19 290 1 455 229 38 0 chr15 47989845 47989950 -37705804 - MIR SINE MIR -5 257 149 580 176 0 0 chr15 47990544 47990635 -37705119 + MER2 DNA MER2_type 45 135 -210 817 122 0 83 chr15 47990654 47990810 -37704944 - FLAM_C SINE Alu 0 143 1 1300 157 37 0 chr15 47990810 47991026 -37704728 + MER2 DNA MER2_type 122 345 0 1139 173 5 15 chr15 47991077 47991279 -37704475 - AluSg/x SINE Alu -20 292 93 32 0 0 0 chr15 47991845 47991877 -37703877 + AT_rich Low_complexity Low_complexity 1 32 0 1521 139 96 36 chr15 47992999 47993279 -37702475 + AluJo SINE Alu 1 297 -15 262 288 25 0 chr15 47994381 47994461 -37701293 - MIR SINE MIR -112 150 69 2245 98 17 0 chr15 47996194 47996481 -37699273 - AluSq SINE Alu -21 292 1 604 132 33 11 chr15 47996679 47996770 -37698984 + AluJ/FLAM SINE Alu 5 97 -215 521 157 11 0 chr15 47996826 47996915 -37698839 + AluJ/FRAM SINE Alu 223 312 0 259 259 74 12 chr15 47997206 47997287 -37698467 - MIR SINE MIR -58 150 65 2173 128 3 0 chr15 47997303 47997608 -37698146 - AluSx SINE Alu -5 307 2 406 295 204 24 chr15 47997856 47998337 -37697417 - L2 LINE L2 -76 3237 2641 2190 101 0 0 chr15 47998434 47998747 -37697007 - AluSq SINE Alu 0 323 11 209 203 172 0 chr15 47998866 47998930 -37696824 + MER5C DNA MER1_type 238 312 -12 932 282 78 32 chr15 47998946 47999290 -37696464 - L2 LINE L2 -715 2599 2240 362 320 8 8 chr15 47999315 47999440 -37696314 - L2 LINE L2 -1345 1969 1845 27 0 0 0 chr15 48000418 48000445 -37695309 + AT_rich Low_complexity Low_complexity 1 27 0 2126 83 22 0 chr15 48000622 48000919 -37694835 - AluSq SINE Alu 0 303 1 197 243 43 29 chr15 48003414 48003484 -37692270 - MIR3 SINE MIR -19 189 119 226 233 67 0 chr15 48003485 48003545 -37692209 - MLT1L LTR MaLR -73 542 479 1676 84 0 0 chr15 48003854 48004067 -37691687 - AluSx SINE Alu -99 213 1 4133 136 33 30 chr15 48004326 48005031 -37690723 + MER39 LTR ERV1 1 707 0 1098 239 91 43 chr15 48005032 48005496 -37690258 - L1MC/D LINE L1 -2059 5749 5264 816 91 50 0 chr15 48005794 48005915 -37689839 - AluSx SINE Alu -6 306 180 709 118 0 0 chr15 48005912 48006005 -37689749 - AluSx SINE Alu -218 94 2 * 964 302 279 9 chr15 48006072 48006950 -37688804 + L2 LINE L2 1842 2956 -358 1478 187 224 4 chr15 48007527 48007982 -37687772 - L1ME1 LINE L1 -9 6157 5603 248 324 14 14 chr15 48008085 48008159 -37687595 - MIR SINE MIR -115 93 20 367 46 102 0 chr15 48008736 48008844 -37686910 + (TA)n Simple_repeat Simple_repeat 2 120 0 312 246 183 0 chr15 48009558 48009684 -37686070 + MIR SINE MIR 100 248 -14 258 163 41 0 chr15 48009652 48009701 -37686053 + L2 LINE L2 3262 3312 -1 * 292 322 51 8 chr15 48009870 48009988 -37685766 - MIR SINE MIR -56 206 84 384 255 143 31 chr15 48010418 48010579 -37685175 + MIR SINE MIR 72 250 -12 284 174 220 53 chr15 48010609 48010741 -37685013 + MER113 DNA MER1_type? 28 181 -340 637 255 110 45 chr15 48010753 48010986 -37684768 - L2 LINE L2 0 3313 3056 636 207 16 85 chr15 48010986 48011174 -37684580 + MER69A DNA AcHobo 1 175 -2 637 255 110 45 chr15 48011174 48011230 -37684524 - L2 LINE L2 -257 3056 3005 2159 213 86 30 chr15 48011549 48012109 -37683645 + L1ME1 LINE L1 5476 6066 -100 241 349 0 0 chr15 48013509 48013592 -37682162 + GA-rich Low_complexity Low_complexity 6 88 0 258 227 76 0 chr15 48013629 48013695 -37682059 + L1ME2 LINE L1 5990 6060 -104 301 305 128 14 chr15 48014703 48014844 -37680910 + MIR3 SINE MIR 33 189 -19 2040 153 0 0 chr15 48015140 48015538 -37680216 + AluSx SINE Alu 1 398 0 918 304 58 32 chr15 48015921 48016267 -37679487 - MER20B DNA MER1_type -422 361 7 1547 162 55 4 chr15 48016417 48016688 -37679066 - AluJo SINE Alu -27 285 1 4965 141 34 17 chr15 48016729 48017757 -37677997 - L1MB7 LINE L1 -30 6154 5110 341 276 13 86 chr15 48018274 48018426 -37677328 - MIR3 SINE MIR -11 197 57 642 264 94 43 chr15 48018701 48018936 -37676818 - MIR SINE MIR -14 248 2 239 217 200 35 chr15 48019445 48019560 -37676194 + MIR SINE MIR 114 247 -15 2227 104 0 7 chr15 48019602 48019910 -37675844 - AluSx SINE Alu -6 306 1 409 182 0 0 chr15 48019927 48020004 -37675750 - Alu SINE Alu 0 311 235 1218 107 0 0 chr15 48020106 48020275 -37675479 - AluSq SINE Alu -119 194 26 412 257 0 9 chr15 48020368 48020477 -37675277 - MIR SINE MIR -139 123 16 487 304 53 43 chr15 48020828 48020905 -37674849 - MIR SINE MIR 0 262 187 2103 96 27 7 chr15 48020905 48021206 -37674548 + AluSq SINE Alu 2 308 -5 487 304 53 43 chr15 48021206 48021396 -37674358 - MIR SINE MIR -75 187 2 1598 105 32 18 chr15 48021775 48022052 -37673702 - L1MA7 LINE L1 -20 6271 5991 939 174 71 5 chr15 48022057 48022241 -37673513 - AluJb SINE Alu -116 196 1 245 219 42 134 chr15 48022241 48022360 -37673394 - MER5C DNA MER1_type -214 110 3 896 194 0 0 chr15 48022738 48022903 -37672851 - FRAM SINE Alu -10 166 2 1830 157 0 20 chr15 48023274 48023580 -37672174 + AluSx SINE Alu 1 300 -12 377 136 17 0 chr15 48023601 48023660 -37672094 + Charlie5 DNA MER1_type 11 70 -2542 * 714 146 18 79 chr15 48023658 48023728 -37672026 + Charlie5 DNA MER1_type 2430 2503 -82 1905 113 0 86 chr15 48023728 48023748 -37672006 + AluSq SINE Alu 1 21 -292 2307 72 0 23 chr15 48023748 48024053 -37671701 + AluSg SINE Alu 1 298 -12 1905 113 0 86 chr15 48024053 48024181 -37671573 + AluSq SINE Alu 21 158 -155 2814 3 0 0 chr15 48024181 48024491 -37671263 + AluYb8 SINE Alu 2 311 -7 1905 113 0 86 chr15 48024491 48024678 -37671076 + AluSq SINE Alu 158 308 -5 714 146 18 79 chr15 48024678 48024772 -37670982 + Charlie5 DNA MER1_type 2503 2584 -1 1717 142 10 10 chr15 48025772 48026061 -37669693 - AluJo SINE Alu -18 294 6 4618 120 14 10 chr15 48026093 48026795 -37668959 + L1MC1 LINE L1 5629 6333 0 546 199 72 99 chr15 48026827 48026940 -37668814 + MER97a DNA MER1_type? 1 109 -785 2240 84 7 3 chr15 48026940 48027237 -37668517 + AluSx SINE Alu 1 298 -14 546 199 72 99 chr15 48027237 48027304 -37668450 + MER97a DNA MER1_type? 109 176 -718 321 26 0 0 chr15 48027304 48027342 -37668412 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 397 314 122 0 chr15 48028144 48028300 -37667454 + MIR3 SINE MIR 30 204 -4 197 215 154 15 chr15 48029089 48029154 -37666600 - L2 LINE L2 0 3272 3199 284 265 0 0 chr15 48029185 48029253 -37666501 - MIR SINE MIR -60 148 81 236 302 23 0 chr15 48029867 48029953 -37665801 - MIR SINE MIR -57 151 64 1366 83 11 0 chr15 48030279 48030486 -37665268 + AluSg/x SINE Alu 100 308 0 1681 147 55 0 chr15 48031652 48031944 -37663810 - AluSx SINE Alu -4 308 1 799 217 106 29 chr15 48031994 48032201 -37663553 - MIR SINE MIR -9 253 31 309 268 152 0 chr15 48032332 48032444 -37663310 - L3 LINE CR1 -200 1377 1249 262 270 117 36 chr15 48032539 48032735 -37663019 - L1MC4a LINE L1 -1753 6055 5844 2478 62 0 0 chr15 48032935 48033242 -37662512 + AluY SINE Alu 1 307 -4 24 0 0 0 chr15 48033289 48033313 -37662441 + AT_rich Low_complexity Low_complexity 1 24 0 291 227 30 15 chr15 48033328 48033394 -37662360 + AluJ/FLAM SINE Alu 6 72 -230 509 325 27 11 chr15 48034048 48034236 -37661518 - MIR SINE MIR -70 192 2 1829 156 52 75 chr15 48034373 48034758 -37660996 + MLT1B LTR MaLR 13 388 -2 258 148 37 0 chr15 48034846 48034900 -37660854 - MER5A DNA MER1_type -102 87 32 2089 105 0 3 chr15 48035152 48035437 -37660317 - AluSx SINE Alu -28 284 1 1691 203 135 63 chr15 48035548 48035929 -37659825 + Zaphod DNA AcHobo 1784 2136 -1895 1971 147 0 0 chr15 48035929 48036221 -37659533 + AluSx SINE Alu 3 294 -18 1691 203 135 63 chr15 48036221 48036477 -37659277 + Zaphod DNA AcHobo 2136 2482 -1549 1897 160 65 75 chr15 48036477 48036983 -37658771 + MLT1D LTR MaLR 5 505 0 1691 203 135 63 chr15 48036983 48037068 -37658686 + Zaphod DNA AcHobo 2482 2559 -1472 667 176 86 122 chr15 48037069 48037265 -37658489 + Zaphod DNA AcHobo 1791 1979 -2052 2016 121 4 0 chr15 48037265 48037569 -37658185 - AluSx SINE Alu 0 305 1 667 176 86 122 chr15 48037569 48037626 -37658128 + Zaphod DNA AcHobo 1979 2036 -1995 4126 208 88 71 chr15 48037653 48039010 -37656744 + Zaphod DNA AcHobo 2504 3892 -139 2146 88 0 3 chr15 48039010 48039330 -37656424 + AluSq SINE Alu 1 319 0 4126 208 88 71 chr15 48039330 48039473 -37656281 + Zaphod DNA AcHobo 3892 4031 0 342 246 119 34 chr15 48039519 48039637 -37656117 - MIR SINE MIR -118 144 17 470 273 156 51 chr15 48040067 48040276 -37655478 + L1MEd LINE L1 437 623 -5496 2049 123 0 10 chr15 48040276 48040577 -37655177 - AluSx SINE Alu -14 298 1 470 273 156 51 chr15 48040577 48040760 -37654994 + L1MEd LINE L1 623 785 -5334 1557 176 3 20 chr15 48040760 48041055 -37654699 + AluJo SINE Alu 1 290 -22 470 273 156 51 chr15 48041055 48041344 -37654410 + L1MEd LINE L1 785 1229 -4890 250 233 17 17 chr15 48041392 48041452 -37654302 + MLT1J1 LTR MaLR 66 125 -321 1966 120 3 0 chr15 48041484 48041768 -37653986 + AluSx SINE Alu 7 291 -21 301 211 135 39 chr15 48041889 48041993 -37653761 + LTR16A LTR ERVL 157 270 -180 425 286 8 16 chr15 48042020 48042146 -37653608 + LTR16A1 LTR ERVL 327 451 -6 517 191 11 0 chr15 48042157 48042246 -37653508 - 5S rRNA rRNA -31 90 1 271 245 75 11 chr15 48042349 48042443 -37653311 + MLT1I LTR MaLR 310 409 0 913 312 93 15 chr15 48042657 48043310 -37652444 + L1MEd LINE L1 2114 2817 -3312 2829 156 42 28 chr15 48043323 48043899 -37651855 + L1MB7 LINE L1 5601 6184 0 357 204 43 54 chr15 48043920 48044013 -37651741 + MER91C DNA MER1_type 16 107 -33 822 280 51 70 chr15 48044024 48044423 -37651331 + L1MEd LINE L1 3507 3912 -2217 2167 96 0 3 chr15 48044423 48044784 -37650970 + AluSx SINE Alu 1 360 0 822 280 51 70 chr15 48044784 48044795 -37650959 + L1MEd LINE L1 3912 3922 -2207 2171 108 0 0 chr15 48044795 48045091 -37650663 + AluSg1 SINE Alu 1 296 -13 822 280 51 70 chr15 48045091 48045267 -37650487 + L1MEd LINE L1 3922 4085 -2044 318 122 54 95 chr15 48045278 48045352 -37650402 - L1MCa LINE L1 -4362 2064 1994 198 50 75 0 chr15 48045354 48045394 -37650360 + (TA)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr15 48045394 48045417 -37650337 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 375 123 0 0 chr15 48045446 48045503 -37650251 - AluS SINE Alu -245 58 2 210 333 16 0 chr15 48045513 48045576 -37650178 - MER5A DNA MER1_type -125 64 1 230 260 125 31 chr15 48045693 48045789 -37649965 - MIR SINE MIR -41 221 117 2057 121 0 22 chr15 48045979 48046294 -37649460 + AluSx SINE Alu 3 310 -2 209 227 181 0 chr15 48046643 48046723 -37649031 - MIR SINE MIR -70 138 73 631 218 141 0 chr15 48047099 48047255 -37648499 - MIR SINE MIR 0 262 85 272 210 210 25 chr15 48047892 48048011 -37647743 + L2 LINE L2 2918 3058 -214 1755 157 78 28 chr15 48048015 48048372 -37647382 + THE1C LTR MaLR 1 375 0 396 333 196 26 chr15 48050048 48050472 -37645282 - L2 LINE L2 -337 2977 2482 1174 292 50 39 chr15 48050486 48051085 -37644669 - L1MC/D LINE L1 -784 5362 5149 26 50 0 0 chr15 48051085 48051125 -37644629 + AT_rich Low_complexity Low_complexity 1 40 0 1174 292 50 39 chr15 48051125 48051869 -37643885 - L1MC/D LINE L1 -997 5149 4415 535 135 38 0 chr15 48052172 48052305 -37643449 + (TAGA)n Simple_repeat Simple_repeat 3 140 0 250 306 79 11 chr15 48053098 48053221 -37642533 - L1MC/D LINE L1 -2745 3401 3288 2437 96 0 0 chr15 48053221 48053523 -37642231 - AluSg SINE Alu -8 302 1 250 306 79 11 chr15 48053523 48053664 -37642090 - L1MC/D LINE L1 -2858 3288 3119 184 205 26 0 chr15 48053752 48053791 -37641963 - L2 LINE L2 -2571 743 704 2276 117 7 0 chr15 48054206 48054506 -37641248 - AluSx SINE Alu -10 302 1 940 276 102 26 chr15 48054532 48054638 -37641116 - L1ME3A LINE L1 -232 5938 5842 944 99 7 7 chr15 48054638 48054790 -37640964 - L1MB4 LINE L1 -1 6179 6028 940 276 102 26 chr15 48054790 48055511 -37640243 - L1ME3A LINE L1 -328 5842 5044 318 50 0 0 chr15 48055524 48055564 -37640190 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 286 111 0 0 chr15 48055564 48055609 -37640145 - AluJo SINE Alu -3 297 253 1217 177 0 15 chr15 48055609 48055812 -37639942 - AluJo SINE Alu -96 216 17 268 254 14 14 chr15 48056567 48056638 -37639116 - MLT1K LTR MaLR -9 579 509 285 217 0 24 chr15 48056705 48056788 -37638966 + (TCTCTG)n Simple_repeat Simple_repeat 5 85 0 614 201 0 7 chr15 48057342 48057491 -37638263 + (TG)n Simple_repeat Simple_repeat 2 149 0 285 175 48 16 chr15 48058076 48058139 -37637615 - L2 LINE L2 -1 3271 3207 197 287 21 75 chr15 48058425 48058519 -37637235 - MIR3 SINE MIR -6 202 114 656 210 113 79 chr15 48059180 48059231 -37636523 + L1MC4a LINE L1 6140 6188 -1620 351 0 0 0 chr15 48059231 48059270 -37636484 + (TG)n Simple_repeat Simple_repeat 2 40 0 656 210 113 79 chr15 48059270 48059528 -37636226 + L1MC4a LINE L1 6188 6468 -1340 2031 125 11 0 chr15 48059528 48059840 -37635914 + AluSx SINE Alu 1 315 0 656 210 113 79 chr15 48059840 48059909 -37635845 + L1MC4a LINE L1 6468 6533 -1275 344 139 14 28 chr15 48059900 48059972 -37635782 + L1MC4 LINE L1 7967 8037 -5 * 226 254 79 79 chr15 48059985 48060111 -37635643 - MER5A DNA MER1_type 0 189 64 190 286 61 0 chr15 48060131 48060180 -37635574 + MIR3 SINE MIR 142 193 -15 550 284 226 18 chr15 48060418 48060746 -37635008 + L2 LINE L2 2912 3307 -6 1666 188 28 7 chr15 48061063 48061345 -37634409 + AluJb SINE Alu 1 288 -24 21 0 0 0 chr15 48061345 48061366 -37634388 + AT_rich Low_complexity Low_complexity 1 21 0 1919 169 0 3 chr15 48061605 48061907 -37633847 - AluJo SINE Alu -11 301 1 869 64 9 0 chr15 48061943 48062053 -37633701 - HY1 scRNA scRNA -1 111 1 471 309 16 37 chr15 48063530 48063718 -37632036 + MER5A DNA MER1_type 1 184 -5 1023 190 168 6 chr15 48064941 48065257 -37630497 + L1MB8 LINE L1 5806 6172 -6 2161 147 25 40 chr15 48065709 48065878 -37629876 + MLT1B LTR MaLR 1 171 -219 2475 82 3 0 chr15 48065878 48066181 -37629573 + AluY SINE Alu 1 304 -7 2161 147 25 40 chr15 48066181 48066407 -37629347 + MLT1B LTR MaLR 171 390 0 22 0 0 0 chr15 48066438 48066460 -37629294 + AT_rich Low_complexity Low_complexity 1 22 0 960 121 0 8 chr15 48066460 48066592 -37629162 + FLAM_C SINE Alu 1 131 -12 664 220 69 29 chr15 48067472 48067645 -37628109 - MER5A DNA MER1_type -9 180 1 1588 171 66 0 chr15 48067808 48068082 -37627672 - AluJb SINE Alu -20 292 1 217 208 38 19 chr15 48068820 48068873 -37626881 + GA-rich Low_complexity Low_complexity 1 54 0 1318 145 60 0 chr15 48068917 48069151 -37626603 - Tigger2a DNA MER2_type 0 434 187 462 146 165 10 chr15 48069138 48069241 -37626513 - Tigger2a DNA MER2_type -315 119 1 * 498 272 195 0 chr15 48069421 48069616 -37626138 - MIR SINE MIR -1 261 29 478 272 41 41 chr15 48070034 48070181 -37625573 - MIR SINE MIR -91 171 25 372 192 149 41 chr15 48070351 48070509 -37625245 - MIR SINE MIR -51 211 36 530 160 0 0 chr15 48070631 48070725 -37625029 + LTR5 LTR ERVK 1 94 -875 367 147 27 13 chr15 48070727 48070802 -37624952 + LTR5 LTR ERVK 894 969 0 587 306 60 0 chr15 48072769 48072968 -37622786 + MIR SINE MIR 22 230 -32 317 274 0 57 chr15 48073056 48073191 -37622563 - MIR SINE MIR -104 104 10 200 277 31 0 chr15 48073577 48073642 -37622112 + GA-rich Low_complexity Low_complexity 2 68 0 204 67 0 0 chr15 48074362 48074392 -37621362 + (A)n Simple_repeat Simple_repeat 1 30 0 378 331 43 0 chr15 48074961 48075124 -37620630 - MIR3 SINE MIR -18 190 21 317 325 111 0 chr15 48075864 48075981 -37619773 + L2 LINE L2 3136 3265 -7 905 117 0 0 chr15 48076216 48076336 -37619418 + AluSq/x SINE Alu 1 120 -193 2396 138 69 22 chr15 48076970 48077377 -37618377 + MSTB LTR MaLR 1 426 0 337 261 193 0 chr15 48077442 48077561 -37618193 + L1MC5 LINE L1 6683 6824 -1137 348 216 124 72 chr15 48077582 48077735 -37618019 + L1MC5 LINE L1 7774 7934 -27 329 260 158 47 chr15 48077733 48077860 -37617894 + L1MC4 LINE L1 6929 7069 -973 * 450 296 85 60 chr15 48077910 48078346 -37617408 + L1MC4 LINE L1 7017 7476 -566 326 320 52 6 chr15 48078350 48078522 -37617232 + L1MC5 LINE L1 7312 7491 -470 23 33 0 0 chr15 48078753 48078783 -37616971 + AT_rich Low_complexity Low_complexity 1 30 0 1915 142 66 0 chr15 48078783 48079072 -37616682 + 7SLRNA srpRNA srpRNA 12 319 -1 21 0 0 0 chr15 48080046 48080067 -37615687 + AT_rich Low_complexity Low_complexity 1 21 0 187 250 0 0 chr15 48080127 48080167 -37615587 - L2 LINE L2 -9 3304 3265 1631 232 35 40 chr15 48080331 48080684 -37615070 + L2 LINE L2 2910 3262 -51 1659 91 123 16 chr15 48080684 48080936 -37614818 + AluSx SINE Alu 13 291 -21 1631 232 35 40 chr15 48080936 48080987 -37614767 + L2 LINE L2 3262 3312 -1 225 0 0 0 chr15 48081041 48081066 -37614688 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 3188 145 27 20 chr15 48081585 48082178 -37613576 + Tigger1 DNA MER2_type 142 738 -1680 1962 123 49 3 chr15 48082341 48082626 -37613128 - AluSq SINE Alu -15 298 1 469 311 56 6 chr15 48083688 48083849 -37611905 - MIR SINE MIR -2 260 92 319 266 0 32 chr15 48083856 48083950 -37611804 - MER45A DNA AcHobo -2 176 86 561 123 0 0 chr15 48083952 48084080 -37611674 + AluJb SINE Alu 202 329 0 2254 134 0 0 chr15 48084085 48084391 -37611363 + AluSx SINE Alu 1 306 -6 258 279 139 0 chr15 48084391 48084470 -37611284 - MER45A DNA AcHobo -88 90 1 783 280 30 4 chr15 48084936 48085168 -37610586 - MIR SINE MIR -19 243 6 362 245 84 51 chr15 48086665 48086841 -37608913 + MIR SINE MIR 9 187 -73 355 288 113 19 chr15 48086877 48087037 -37608717 - MIR SINE MIR -28 234 60 234 191 0 59 chr15 48087767 48087835 -37607919 + GA-rich Low_complexity Low_complexity 1 64 0 660 162 20 22 chr15 48088069 48088428 -37607326 + (TG)n Simple_repeat Simple_repeat 1 358 0 479 182 41 0 chr15 48088457 48088627 -37607127 + (TG)n Simple_repeat Simple_repeat 2 178 0 939 188 42 2 chr15 48089053 48089344 -37606410 - MER63B DNA MER1_type -68 368 9 2288 99 3 0 chr15 48090725 48091017 -37604737 - AluSc SINE Alu -16 293 1 489 332 76 29 chr15 48091017 48091333 -37604421 - L3 LINE CR1 -309 1268 938 183 237 68 34 chr15 48092602 48092661 -37603093 + L3 LINE CR1 1512 1572 -5 312 221 80 44 chr15 48092910 48093023 -37602731 - MIR SINE MIR -55 207 91 738 180 44 71 chr15 48094415 48094598 -37601156 - MER20 DNA MER1_type 0 219 42 753 179 0 0 chr15 48094698 48094810 -37600944 - FLAM_C SINE Alu -30 113 2 212 200 143 57 chr15 48094965 48095035 -37600719 + MIR3 SINE MIR 107 182 -26 208 302 113 19 chr15 48096206 48096312 -37599442 + L2 LINE L2 3155 3270 -2 1706 214 63 27 chr15 48096857 48097300 -37598454 + LTR2B LTR ERV1 32 490 0 2049 175 28 0 chr15 48097314 48097669 -37598085 + MLT1A1 LTR MaLR 1 365 0 326 217 145 87 chr15 48097672 48097693 -37598061 - MIR3 SINE MIR -2 206 188 1420 188 67 11 chr15 48097693 48097975 -37597779 + AluJb SINE Alu 1 298 -14 326 217 145 87 chr15 48097975 48098091 -37597663 - MIR3 SINE MIR -20 188 61 2639 152 25 17 chr15 48098926 48099005 -37596749 + L1MB3 LINE L1 5701 5778 -405 2379 144 64 20 chr15 48099005 48099045 -37596709 - MSTA LTR MaLR -1 427 390 2121 130 0 0 chr15 48099045 48099354 -37596400 + AluSx SINE Alu 1 309 0 2379 144 64 20 chr15 48099354 48099529 -37596225 - MSTA LTR MaLR -38 390 224 186 43 0 0 chr15 48099529 48099552 -37596202 + (GA)n Simple_repeat Simple_repeat 2 24 0 2379 144 64 20 chr15 48099552 48099743 -37596011 - MSTA LTR MaLR -204 224 1 2639 152 25 17 chr15 48099743 48100138 -37595616 + L1MB3 LINE L1 5778 6179 -4 22 56 0 0 chr15 48100155 48100191 -37595563 + AT_rich Low_complexity Low_complexity 1 36 0 2252 106 0 0 chr15 48100888 48101174 -37594580 + AluSx SINE Alu 1 452 0 1174 48 12 12 chr15 48101174 48101340 -37594414 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2890 171 27 29 chr15 48101354 48101386 -37594368 - MLT2B3 LTR ERVL 0 554 523 180 111 0 0 chr15 48101386 48101413 -37594341 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 180 0 0 0 chr15 48101423 48101443 -37594311 + (GA)n Simple_repeat Simple_repeat 1 20 0 2890 171 27 29 chr15 48101443 48101954 -37593800 - MLT2B3 LTR ERVL -40 514 1 2221 171 14 80 chr15 48102061 48102139 -37593615 + L1MB4 LINE L1 5303 5385 -795 396 0 0 0 chr15 48102139 48102183 -37593571 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2221 171 14 80 chr15 48102183 48102507 -37593247 + L1MB4 LINE L1 5385 5660 -520 1731 147 64 0 chr15 48102507 48102772 -37592982 - AluJo SINE Alu -14 298 17 2221 171 14 80 chr15 48102772 48102929 -37592825 + L1MB4 LINE L1 5660 5826 -354 961 200 0 0 chr15 48102937 48103092 -37592662 + AluJb SINE Alu 144 298 -14 1562 183 27 25 chr15 48103092 48103459 -37592295 + L1MB4 LINE L1 5813 6180 0 226 287 104 43 chr15 48103614 48103729 -37592025 - MIR3 SINE MIR -43 165 44 697 205 41 119 chr15 48104000 48104268 -37591486 - MER112 DNA MER1_type -6 254 8 2399 82 3 0 chr15 48104285 48104577 -37591177 + AluSp SINE Alu 1 293 -20 2126 141 3 3 chr15 48104678 48104983 -37590771 + AluSx SINE Alu 1 305 -7 4727 94 24 9 chr15 48105082 48105763 -37589991 - LTR8 LTR ERV1 0 691 1 3397 67 5 2 chr15 48105763 48106212 -37589542 - HUERS-P1 LTR ERV1 0 6263 5814 273 132 0 0 chr15 48106216 48106254 -37589500 + LTR8 LTR ERV1 654 691 0 1914 149 0 14 chr15 48106325 48106636 -37589118 - AluSx SINE Alu 0 312 23 6006 60 4 23 chr15 48106636 48107467 -37588287 - HUERS-P1 LTR ERV1 -461 5802 4988 817 108 9 0 chr15 48107567 48107678 -37588076 + AluSc SINE Alu 186 297 -12 21081 80 21 40 chr15 48107678 48110831 -37584923 - HUERS-P1 LTR ERV1 -3168 3095 1 3680 82 36 15 chr15 48110831 48111357 -37584397 - LTR8 LTR ERV1 0 691 155 1250 77 6 0 chr15 48111457 48111625 -37584129 - LTR8 LTR ERV1 -522 169 1 230 354 63 8 chr15 48111746 48111873 -37583881 + MIR SINE MIR 65 198 -64 1883 146 3 44 chr15 48112044 48112360 -37583394 + AluSx SINE Alu 9 311 -1 225 164 0 55 chr15 48112434 48112507 -37583247 - L1MA4 LINE L1 -280 6020 5952 408 316 97 42 chr15 48113387 48113624 -37582130 + MIR SINE MIR 13 262 0 1733 95 0 9 chr15 48113740 48113961 -37581793 + AluSq SINE Alu 1 219 -94 1760 147 51 0 chr15 48114533 48114644 -37581110 + AluJb SINE Alu 5 109 -203 180 0 0 0 chr15 48114644 48114664 -37581090 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1760 147 51 0 chr15 48114664 48114825 -37580929 + AluJb SINE Alu 109 291 -21 1135 159 147 0 chr15 48114829 48115074 -37580680 + L1MC2 LINE L1 6053 6333 -11 2278 118 0 3 chr15 48115084 48115390 -37580364 + AluSx SINE Alu 1 305 -7 283 286 22 0 chr15 48115399 48115490 -37580264 + Charlie8 DNA MER1_type 123 215 -2202 387 0 0 0 chr15 48116192 48116235 -37579519 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 295 294 119 24 chr15 48116236 48116362 -37579392 - L2 LINE L2 -14 3258 3121 194 280 153 61 chr15 48116553 48116622 -37579132 - L2 LINE L2 -177 3095 3034 2235 133 0 0 chr15 48116622 48116931 -37578823 + AluSx SINE Alu 1 309 -3 194 280 153 61 chr15 48116931 48117122 -37578632 - L2 LINE L2 -238 3034 2811 332 236 179 16 chr15 48117272 48117395 -37578359 + MIR SINE MIR 46 188 -74 192 77 0 0 chr15 48117662 48117688 -37578066 + (T)n Simple_repeat Simple_repeat 1 26 0 335 301 84 55 chr15 48117688 48118157 -37577597 + L1ME4a LINE L1 5614 6105 -16 188 341 77 0 chr15 48118545 48118636 -37577118 - L2 LINE L2 -12 3260 3163 1599 123 47 86 chr15 48118971 48119321 -37576433 - AluJb SINE Alu 0 477 143 1987 102 62 43 chr15 48119321 48119625 -37576129 - AluSx SINE Alu -2 310 1 1599 123 47 86 chr15 48119625 48119753 -37576001 - AluJb SINE Alu -334 143 11 686 249 82 52 chr15 48120209 48120539 -37575215 + L1MC5 LINE L1 7568 7907 -54 29 0 0 0 chr15 48121192 48121221 -37574533 + AT_rich Low_complexity Low_complexity 1 29 0 272 257 35 111 chr15 48121380 48121524 -37574230 + MER5B DNA MER1_type 14 146 -32 248 344 33 44 chr15 48122195 48122375 -37573379 + MER5B DNA MER1_type 1 178 0 1606 153 41 44 chr15 48122479 48122608 -37573146 + MER44D DNA MER2_type 2 130 -2361 612 27 0 0 chr15 48122608 48122682 -37573072 + (TA)n Simple_repeat Simple_repeat 2 75 0 2113 111 0 10 chr15 48122682 48122971 -37572783 - AluSx SINE Alu -25 287 2 1606 153 41 44 chr15 48122971 48123179 -37572575 + MER44D DNA MER2_type 128 609 0 210 225 0 0 chr15 48123435 48123475 -37572279 + L2 LINE L2 2306 2345 -969 232 241 0 0 chr15 48124602 48124656 -37571098 + MIR SINE MIR 106 160 -48 188 271 75 84 chr15 48124668 48124702 -37571052 - MIR SINE MIR -16 246 213 2166 120 7 0 chr15 48124702 48125002 -37570752 + AluSx SINE Alu 1 302 -10 188 271 75 84 chr15 48125002 48125074 -37570680 - MIR SINE MIR -49 213 141 2089 142 3 0 chr15 48125440 48125743 -37570011 + AluSx SINE Alu 1 304 -8 216 259 94 12 chr15 48127324 48127409 -37568345 - MIR SINE MIR -72 136 45 207 0 0 0 chr15 48128276 48128299 -37567455 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1723 176 3 14 chr15 48128316 48128606 -37567148 - AluJo SINE Alu -25 287 1 834 284 77 18 chr15 48129921 48130312 -37565442 - MER74B LTR ERVL 0 622 209 215 274 48 12 chr15 48130412 48130496 -37565258 + L2 LINE L2 998 1084 -2230 2749 42 0 3 chr15 48130752 48131064 -37564690 - AluY SINE Alu 0 311 1 180 0 0 0 chr15 48131099 48131119 -37564635 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1352 291 42 33 chr15 48131210 48131744 -37564010 + L1MC4a LINE L1 5287 5546 -756 2202 129 7 0 chr15 48131744 48132053 -37563701 - AluSx SINE Alu -1 311 1 1352 291 42 33 chr15 48132053 48132151 -37563603 + L1MC4a LINE L1 5546 5642 -660 241 309 117 19 chr15 48132425 48132784 -37562970 + L2 LINE L2 1917 2310 -1004 351 315 55 61 chr15 48132992 48133173 -37562581 + L2 LINE L2 2875 3054 -218 1223 158 9 22 chr15 48133181 48133403 -37562351 + MER20 DNA MER1_type 1 219 0 198 103 0 0 chr15 48134337 48134366 -37561388 + (TCCCC)n Simple_repeat Simple_repeat 4 32 0 1925 129 15 221 chr15 48134424 48134632 -37561122 + L1MB2 LINE L1 5574 5823 -348 607 111 0 0 chr15 48134632 48134722 -37561032 + AluSg/x SINE Alu 205 294 -16 1925 129 15 221 chr15 48134722 48135118 -37560636 + L1MB2 LINE L1 5823 6119 -52 2307 79 24 3 chr15 48135118 48135408 -37560346 + AluSc SINE Alu 1 296 -13 1925 129 15 221 chr15 48135408 48135427 -37560327 + L1MB2 LINE L1 6119 6140 -31 285 317 76 28 chr15 48136502 48136535 -37559219 - MIR3 SINE MIR -26 182 152 813 161 26 91 chr15 48136535 48136765 -37558989 + MER20 DNA MER1_type 5 219 0 285 317 76 28 chr15 48136765 48136876 -37558878 - MIR3 SINE MIR -56 152 31 282 56 0 0 chr15 48138203 48138239 -37557515 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 282 114 0 0 chr15 48138779 48138823 -37556931 - MIR SINE MIR -61 147 108 2076 125 0 0 chr15 48139086 48139366 -37556388 + AluSx SINE Alu 1 280 -32 1276 88 2 13 chr15 48139368 48139830 -37555924 + (GAAA)n Simple_repeat Simple_repeat 1 456 0 242 250 11 65 chr15 48140032 48140124 -37555630 - L2 LINE L2 -26 3287 3201 29 47 0 0 chr15 48141484 48141527 -37554227 + GC_rich Low_complexity Low_complexity 1 43 0 394 242 152 8 chr15 48142316 48142448 -37553306 + MIR3 SINE MIR 16 166 -42 205 182 0 0 chr15 48142529 48142562 -37553192 + (TG)n Simple_repeat Simple_repeat 1 33 0 541 209 27 47 chr15 48143342 48143485 -37552269 - MIR3 SINE MIR -39 169 23 257 306 140 13 chr15 48143838 48143995 -37551759 + MIR SINE MIR 86 262 0 384 279 65 25 chr15 48144841 48145037 -37550717 - MLT1C LTR MaLR -5 462 182 673 209 184 14 chr15 48145191 48145468 -37550286 - MLT1C LTR MaLR -136 331 8 1980 102 62 0 chr15 48145712 48145986 -37549768 - AluSx SINE Alu -21 291 1 379 263 70 0 chr15 48146941 48147055 -37548699 + MER5B DNA MER1_type 53 174 -4 2254 113 3 0 chr15 48147613 48147905 -37547849 + AluSx SINE Alu 9 301 -11 381 291 233 10 chr15 48148462 48148668 -37547086 - MIR SINE MIR 0 262 11 399 300 29 21 chr15 48150218 48150358 -37545396 - MIR SINE MIR -71 191 51 215 313 15 0 chr15 48150687 48150754 -37545000 - L2 LINE L2 0 3272 3205 2355 170 78 0 chr15 48150759 48151195 -37544559 + MLT1D LTR MaLR 1 470 -35 187 333 0 16 chr15 48151322 48151385 -37544369 - MER5A DNA MER1_type 0 189 128 416 273 39 32 chr15 48151402 48151556 -37544198 + L2 LINE L2 3156 3310 -3 589 279 67 19 chr15 48151972 48152331 -37543423 - L1ME4a LINE L1 -12 6109 5734 * 1104 171 162 37 chr15 48152327 48152381 -37543373 - L1ME4a LINE L1 -727 5443 5397 333 47 0 0 chr15 48152381 48152424 -37543330 + (TG)n Simple_repeat Simple_repeat 2 44 0 1104 171 162 37 chr15 48152424 48152813 -37542941 - L1ME4a LINE L1 -773 5397 4930 1177 153 29 29 chr15 48152818 48153027 -37542727 - MER21B LTR ERV1 0 863 655 * 2141 185 54 10 chr15 48153026 48153432 -37542322 - MER21B LTR ERV1 -132 731 308 2401 58 0 68 chr15 48153434 48153760 -37541994 - AluY SINE Alu -7 304 1 1877 156 13 10 chr15 48153762 48154069 -37541685 - AluJo SINE Alu -4 308 1 345 176 14 40 chr15 48154069 48154143 -37541611 + Zaphod DNA AcHobo 3938 4009 -22 2311 114 0 0 chr15 48154365 48154672 -37541082 + AluSx SINE Alu 1 307 -5 975 115 25 2 chr15 48155566 48155810 -37539944 + AluSx SINE Alu 2 294 -16 716 149 117 54 chr15 48155974 48156196 -37539558 + ORSL DNA AcHobo 40 275 0 260 267 56 22 chr15 48156671 48156761 -37538993 - L2 LINE L2 -22 3291 3199 1172 174 24 5 chr15 48156779 48156991 -37538763 - MER20 DNA MER1_type -1 218 3 424 184 35 164 chr15 48158973 48159109 -37536645 + MER5B DNA MER1_type 4 107 -71 811 142 31 0 chr15 48159109 48159236 -37536518 - L1MC1 LINE L1 0 6333 6203 424 184 35 164 chr15 48159236 48159300 -37536454 + MER5B DNA MER1_type 107 178 0 397 233 143 8 chr15 48159312 48159445 -37536309 - MER5A DNA MER1_type -6 183 33 354 80 0 0 chr15 48159523 48159573 -37536181 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 287 278 161 37 chr15 48159579 48160129 -37535625 - L2 LINE L2 -11 3302 2645 351 0 0 0 chr15 48160163 48160202 -37535552 + (CA)n Simple_repeat Simple_repeat 1 39 0 25551 147 34 18 chr15 48160305 48164025 -37531729 - ERVL LTR ERVL -256 5508 1849 180 0 0 0 chr15 48164025 48164045 -37531709 + (TG)n Simple_repeat Simple_repeat 1 20 0 2150 134 0 7 chr15 48164046 48164352 -37531402 - AluSx SINE Alu -8 304 1 25551 147 34 18 chr15 48164352 48164771 -37530983 - ERVL LTR ERVL -3915 1849 1438 2483 87 0 0 chr15 48164771 48165082 -37530672 + AluSq SINE Alu 1 311 -2 25551 147 34 18 chr15 48165082 48165556 -37530198 - ERVL LTR ERVL -4326 1438 742 631 227 23 0 chr15 48165557 48165689 -37530065 - MLT2B3 LTR ERVL -376 178 44 1166 200 26 44 chr15 48165690 48165960 -37529794 + Tigger7 DNA MER2_type 2 266 -467 297 259 12 25 chr15 48166018 48166099 -37529655 + Tigger7 DNA MER2_type 2389 2468 -19 523 311 89 4 chr15 48166258 48166493 -37529261 + MIR SINE MIR 8 262 0 235 319 0 0 chr15 48166522 48166594 -37529160 - MIR SINE MIR -122 140 69 1667 166 115 12 chr15 48166760 48167091 -37528663 + MLT1A1 LTR MaLR 1 365 0 1981 126 14 17 chr15 48167591 48167924 -37527830 + AluSx SINE Alu 1 312 0 1143 150 0 6 chr15 48167924 48168091 -37527663 + AluSg/x SINE Alu 134 299 -13 1728 166 19 56 chr15 48168095 48168415 -37527339 + AluJo SINE Alu 1 308 -4 935 154 32 0 chr15 48168753 48168909 -37526845 - FAM SINE Alu -7 42 1 1997 145 3 3 chr15 48169540 48169836 -37525918 + AluJb SINE Alu 1 296 -16 24 0 0 0 chr15 48169994 48170018 -37525736 + AT_rich Low_complexity Low_complexity 1 24 0 305 106 0 0 chr15 48170110 48170157 -37525597 + FAM SINE Alu 126 172 -3 505 279 98 119 chr15 48170160 48171112 -37524642 - L3 LINE CR1 -199 1378 447 423 318 27 74 chr15 48171235 48171493 -37524261 - L3 LINE CR1 -1138 439 194 693 163 38 44 chr15 48171580 48171740 -37524014 + L1MD3 LINE L1 7837 7995 0 2377 87 0 3 chr15 48172002 48172301 -37523453 + AluSg SINE Alu 1 298 -12 22 35 0 0 chr15 48172477 48172506 -37523248 + AT_rich Low_complexity Low_complexity 1 29 0 301 226 9 19 chr15 48173101 48173207 -37522547 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 28 29 0 0 chr15 48173402 48173437 -37522317 + AT_rich Low_complexity Low_complexity 1 35 0 3672 51 18 0 chr15 48173841 48174295 -37521459 + L1PA5 LINE L1 5692 6153 -1 253 258 30 0 chr15 48224886 48224952 -37470802 - MIR SINE MIR -95 167 100 305 302 14 15 chr15 48225845 48226167 -37469587 + MLT1I LTR MaLR 5 391 -18 315 313 27 0 chr15 48226940 48227052 -37468702 + MIR3 SINE MIR 86 200 -8 212 167 24 0 chr15 48228655 48228697 -37467057 + G-rich Low_complexity Low_complexity 3 45 0 312 290 90 66 chr15 48228703 48229127 -37466627 - L2 LINE L2 -818 2496 2063 345 254 129 47 chr15 48229739 48229914 -37465840 + MIR SINE MIR 21 207 -55 378 266 44 1 chr15 48230505 48230619 -37465135 + MIR SINE MIR 76 192 -69 2155 127 7 3 chr15 48232435 48232735 -37463019 - AluSx SINE Alu -4 308 8 202 136 0 23 chr15 48232754 48232798 -37462956 + (TA)n Simple_repeat Simple_repeat 2 44 0 1851 231 31 3 chr15 48232831 48233216 -37462538 - MSTD LTR MaLR 0 396 1 191 189 0 0 chr15 48233641 48233678 -37462076 + MIR SINE MIR 102 138 -70 294 229 60 36 chr15 48234591 48234674 -37461080 + MIR SINE MIR 69 153 -109 234 369 54 13 chr15 48235066 48235215 -37460539 - L2 LINE L2 -963 2351 2197 481 249 47 77 chr15 48236113 48236282 -37459472 - MIR SINE MIR -10 252 89 406 253 0 22 chr15 48236913 48237095 -37458659 + (AATAG)n Simple_repeat Simple_repeat 1 178 0 1098 303 186 26 chr15 48237211 48237484 -37458270 - L2 LINE L2 -1 3312 3084 2216 61 0 0 chr15 48237484 48237794 -37457960 + AluY SINE Alu 34 311 0 1098 303 186 26 chr15 48237794 48238487 -37457267 - L2 LINE L2 -229 3084 2183 216 0 0 0 chr15 48238495 48238519 -37457235 + (CAGTG)n Simple_repeat Simple_repeat 3 26 0 224 302 60 35 chr15 48238536 48238652 -37457102 - MER5A DNA MER1_type -37 152 34 * 315 311 111 57 chr15 48238581 48238861 -37456893 - L2 LINE L2 -1046 2268 1974 2390 195 58 29 chr15 48240377 48240968 -37454786 + MER92B LTR ERV1 1 407 -5 663 221 0 0 chr15 48241719 48241864 -37453890 - LTR16C LTR ERVL -2 489 345 2416 86 0 7 chr15 48241876 48242177 -37453577 + AluSx SINE Alu 1 299 -13 5119 195 143 27 chr15 48242514 48243683 -37452071 + L1MDa LINE L1 1 1033 -5507 312 27 0 0 chr15 48243683 48243720 -37452034 + (CA)n Simple_repeat Simple_repeat 2 38 0 5119 195 143 27 chr15 48243720 48244363 -37451391 + L1MDa LINE L1 1033 2177 -4363 2342 90 20 9 chr15 48244778 48245124 -37450630 - THE1A LTR MaLR -5 350 1 10867 99 9 24 chr15 48245127 48246726 -37449028 - THE1A-int LTR MaLR -5 1575 1 2667 99 6 0 chr15 48246726 48247079 -37448675 - THE1A LTR MaLR 0 355 1 238 191 0 0 chr15 48247552 48247594 -37448160 + MIR SINE MIR 107 148 -60 226 329 168 0 chr15 48247926 48248063 -37447691 + MIR SINE MIR 55 214 -48 465 313 40 11 chr15 48248290 48248466 -37447288 + MIR3 SINE MIR 3 183 -25 254 289 133 32 chr15 48248738 48248987 -37446767 + L2 LINE L2 2827 3100 -172 195 314 29 0 chr15 48248987 48249057 -37446697 + L2 LINE L2 2734 2805 -509 33336 46 3 2 chr15 48249290 48253533 -37442221 - L1P LINE L1 -1892 4254 7 342 297 114 35 chr15 48253764 48253966 -37441788 + MIR SINE MIR 34 251 -11 291 316 11 11 chr15 48254719 48254814 -37440940 + MIR SINE MIR 21 115 -147 320 262 56 28 chr15 48254848 48254955 -37440799 - MIR SINE MIR -56 206 97 453 211 0 0 chr15 48254955 48255078 -37440676 + CT-rich Low_complexity Low_complexity 4 126 0 970 120 23 0 chr15 48256052 48256269 -37439485 + CT-rich Low_complexity Low_complexity 1 222 0 722 208 0 14 chr15 48256269 48256413 -37439341 - FLAM_C SINE Alu 0 143 2 302 172 115 46 chr15 48256625 48256712 -37439042 - MIR SINE MIR -87 121 29 204 204 20 0 chr15 48256843 48256892 -37438862 + GA-rich Low_complexity Low_complexity 3 52 0 307 226 155 0 chr15 48257599 48257683 -37438071 + L2 LINE L2 3168 3264 -8 248 361 39 8 chr15 48257749 48257879 -37437875 + L2 LINE L2 2920 3053 -219 202 317 114 16 chr15 48257846 48257969 -37437785 + L2 LINE L2 3178 3312 -1 * 255 280 37 27 chr15 48258656 48258771 -37436983 + MER5A DNA MER1_type 63 189 0 205 252 281 14 chr15 48259514 48259653 -37436101 - MIR3 SINE MIR -14 194 19 298 282 16 40 chr15 48259828 48259952 -37435802 + MIR SINE MIR 26 146 -62 186 43 0 0 chr15 48260330 48260353 -37435401 + (CGGG)n Simple_repeat Simple_repeat 2 24 0 224 310 0 14 chr15 48261154 48261225 -37434529 + (CTCA)n Simple_repeat Simple_repeat 2 71 0 321 267 52 44 chr15 48261250 48261385 -37434369 - L2 LINE L2 0 3313 3178 552 259 0 0 chr15 48261773 48261935 -37433819 + (TG)n Simple_repeat Simple_repeat 1 162 0 307 314 7 21 chr15 48262288 48262428 -37433326 + A-rich Low_complexity Low_complexity 2 139 0 300 351 12 18 chr15 48262390 48262558 -37433196 + GA-rich Low_complexity Low_complexity 2 168 0 * 458 291 86 51 chr15 48262994 48263228 -37432526 + L1ME4a LINE L1 4035 4276 -1870 1996 121 3 0 chr15 48263708 48264017 -37431737 - AluSq SINE Alu 0 313 3 704 337 131 23 chr15 48264088 48264660 -37431094 + L1ME4a LINE L1 4299 4932 -1214 591 271 158 35 chr15 48264885 48265515 -37430239 + L1ME4a LINE L1 5175 5887 -234 225 159 0 0 chr15 48265525 48265569 -37430185 + (TG)n Simple_repeat Simple_repeat 1 44 0 334 230 92 11 chr15 48265629 48265716 -37430038 + MIR SINE MIR 99 192 -70 258 281 126 59 chr15 48265895 48266030 -37429724 + MIR3 SINE MIR 58 201 -7 303 333 9 9 chr15 48266169 48266277 -37429477 + L2 LINE L2 3206 3313 0 477 291 57 29 chr15 48266546 48266756 -37428998 - MIR SINE MIR -43 219 4 415 317 6 23 chr15 48267208 48267433 -37428321 + GA-rich Low_complexity Low_complexity 1 221 0 236 239 45 57 chr15 48268721 48268809 -37426945 + L2 LINE L2 3182 3268 -45 254 282 14 28 chr15 48268911 48268982 -37426772 + MIR3 SINE MIR 91 160 -48 198 71 0 0 chr15 48269006 48269034 -37426720 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2300 182 12 39 chr15 48269036 48269198 -37426556 - L1MD1 LINE L1 -8 6234 6069 1930 126 0 17 chr15 48269198 48269499 -37426255 + AluSx SINE Alu 1 296 -16 2300 182 12 39 chr15 48269499 48269826 -37425928 - L1MD1 LINE L1 -173 6069 5758 8439 219 40 25 chr15 48269941 48273425 -37422329 - L1MD1 LINE L1 -296 5946 2410 1478 92 35 31 chr15 48273426 48273654 -37422100 - AluSg/x SINE Alu -17 293 65 2194 104 0 3 chr15 48273756 48274055 -37421699 - AluSq SINE Alu -15 298 1 639 149 104 8 chr15 48274056 48274190 -37421564 - MLT1B LTR MaLR -215 175 29 265 246 136 36 chr15 48274539 48274649 -37421105 + MIR3 SINE MIR 82 202 -6 265 250 130 37 chr15 48274705 48274813 -37420941 + MIR SINE MIR 56 173 -89 345 268 18 27 chr15 48274824 48274936 -37420818 + MLT1H LTR MaLR 1 111 -438 2077 169 14 9 chr15 48274936 48275285 -37420469 + MLT1A1 LTR MaLR 1 351 -14 722 273 175 16 chr15 48275290 48275656 -37420098 + MLT1H LTR MaLR 113 536 -13 375 315 24 73 chr15 48277084 48277249 -37418505 - L2 LINE L2 -181 3091 2935 299 267 172 0 chr15 48277251 48277367 -37418387 - L3 LINE CR1 -99 1478 1343 201 192 39 103 chr15 48277780 48277858 -37417896 + MIR SINE MIR 190 262 0 211 250 0 0 chr15 48278005 48278049 -37417705 + MIR SINE MIR 111 154 -108 274 287 57 49 chr15 48278094 48278216 -37417538 + MIR SINE MIR 135 257 -5 22 35 0 0 chr15 48278703 48278732 -37417022 + AT_rich Low_complexity Low_complexity 1 29 0 335 260 0 0 chr15 48278984 48279057 -37416697 - MIR SINE MIR -73 189 117 1299 234 133 24 chr15 48279319 48279733 -37416021 - LTR40b LTR ERVL -2 460 2 1228 248 31 13 chr15 48279733 48280197 -37415557 - HERVL40 LTR ERVL -3 5527 2731 1915 248 83 44 chr15 48280687 48281503 -37414251 - HERVL40 LTR ERVL -607 4539 2030 188 186 17 0 chr15 48282529 48282588 -37413166 + CT-rich Low_complexity Low_complexity 2 61 0 221 169 17 0 chr15 48283510 48283569 -37412185 + CT-rich Low_complexity Low_complexity 2 61 0 1115 295 96 35 chr15 48284835 48285502 -37410252 - L2 LINE L2 -238 3075 2367 528 313 57 1 chr15 48285672 48285956 -37409798 + LTR16A LTR ERVL 145 457 0 432 51 0 0 chr15 48286334 48286393 -37409361 + (TG)n Simple_repeat Simple_repeat 1 59 0 433 349 16 8 chr15 48286442 48286571 -37409183 + MER91A DNA MER1_type 1 130 -66 333 301 36 0 chr15 48286573 48286656 -37409098 + MER91A DNA MER1_type 89 174 -22 547 254 184 14 chr15 48286675 48286892 -37408862 + LTR50 LTR ERVL 2 255 -540 684 288 124 4 chr15 48286951 48287225 -37408529 + LTR50 LTR ERVL 473 779 -16 186 216 0 0 chr15 48288652 48288689 -37407065 + L2 LINE L2 3236 3272 0 180 191 0 24 chr15 48289132 48289174 -37406580 + MIR SINE MIR 118 158 -104 1684 208 85 6 chr15 48289182 48289548 -37406206 + MSTD LTR MaLR 1 395 -1 1121 189 85 0 chr15 48289564 48289823 -37405931 - MER46C DNA MER2_type -27 311 31 826 106 0 0 chr15 48289824 48289937 -37405817 - FRAM SINE Alu -24 152 40 262 262 0 0 chr15 48290553 48290614 -37405140 - MER96 DNA MER1_type? 0 175 115 2300 192 97 16 chr15 48290724 48291219 -37404535 - MLT1F LTR MaLR 0 542 8 424 286 35 102 chr15 48291226 48291600 -37404154 - MLT1F-int LTR MaLR 0 1371 1023 1507 169 37 11 chr15 48291810 48292083 -37403671 - AluJo SINE Alu -17 295 16 337 246 123 43 chr15 48292090 48292277 -37403477 - MLT1F-int LTR MaLR -1169 202 1 1445 205 36 16 chr15 48292286 48292593 -37403161 - MLT1F LTR MaLR -11 531 219 369 272 23 118 chr15 48292684 48292809 -37402945 - L2 LINE L2 -185 3087 2952 1805 149 3 10 chr15 48292809 48293098 -37402656 + AluSx SINE Alu 1 287 -25 369 272 23 118 chr15 48293098 48293277 -37402477 - L2 LINE L2 -320 2952 2812 823 172 0 15 chr15 48294283 48294417 -37401337 - FLAM_C SINE Alu 0 133 2 313 275 22 11 chr15 48294584 48294675 -37401079 - L3 LINE CR1 -507 1070 979 776 194 97 0 chr15 48295031 48295186 -37400568 - MER96 DNA MER1_type -3 172 3 2079 121 20 0 chr15 48295457 48295763 -37399991 - AluSx SINE Alu 0 312 1 2881 53 11 19 chr15 48295814 48296228 -37399526 + L1PA8 LINE L1 5794 6172 0 228 271 148 16 chr15 48296546 48296565 -37399189 - MLT1J LTR MaLR -276 235 220 266 286 22 11 chr15 48296565 48296656 -37399098 - LTR67 LTR ERVL -352 205 114 228 271 148 16 chr15 48296656 48296668 -37399086 - MLT1J LTR MaLR -291 220 98 14874 123 32 11 chr15 48296810 48297822 -37397932 + Tigger1 DNA MER2_type 1 990 -1428 2249 93 0 10 chr15 48297822 48298135 -37397619 + AluSg SINE Alu 1 310 0 14874 123 32 11 chr15 48298135 48299490 -37396264 + Tigger1 DNA MER2_type 990 2418 0 360 233 60 43 chr15 48300167 48300283 -37395471 - MIR SINE MIR -127 135 18 242 209 0 0 chr15 48300424 48300467 -37395287 - MIR3 SINE MIR -48 160 118 213 306 116 7 chr15 48300679 48300826 -37394928 - MIR SINE MIR -80 182 20 188 214 146 79 chr15 48301552 48301641 -37394113 - MIR SINE MIR -84 124 30 900 310 35 4 chr15 48301880 48302141 -37393613 + L3 LINE CR1 400 668 -909 381 326 52 12 chr15 48302159 48302331 -37393423 - MIR SINE MIR -10 252 74 587 315 77 36 chr15 48302425 48302841 -37392913 + L3 LINE CR1 708 1140 -437 12421 123 18 10 chr15 48303987 48304311 -37391443 - Tigger1 DNA MER2_type 0 2418 2098 2375 73 0 13 chr15 48304311 48304625 -37391129 - AluY SINE Alu -1 310 1 12421 123 18 10 chr15 48304625 48306109 -37389645 - Tigger1 DNA MER2_type -320 2098 586 2186 106 3 3 chr15 48306109 48306412 -37389342 + AluSq SINE Alu 1 303 -10 12421 123 18 10 chr15 48306412 48307003 -37388751 - Tigger1 DNA MER2_type -1832 586 1 457 221 82 0 chr15 48307099 48307221 -37388533 + MLT1I LTR MaLR 277 408 -1 383 221 40 153 chr15 48307494 48307716 -37388038 + L3 LINE CR1 1369 1565 -12 347 311 115 0 chr15 48308157 48308279 -37387475 - MIR SINE MIR -79 183 48 204 261 112 48 chr15 48308475 48308634 -37387120 + MIR SINE MIR 20 190 -72 1863 146 0 4 chr15 48308730 48309004 -37386750 + AluSx SINE Alu 1 273 -39 401 300 84 46 chr15 48309009 48309483 -37386271 - MLT1J LTR MaLR -19 492 1 2483 48 0 3 chr15 48309973 48310268 -37385486 + AluY SINE Alu 1 294 -17 284 303 55 18 chr15 48310577 48310904 -37384850 - L1M4 LINE L1 -3012 3134 2796 24 0 0 0 chr15 48310936 48310960 -37384794 + AT_rich Low_complexity Low_complexity 1 24 0 579 314 21 10 chr15 48311066 48311260 -37384494 + MIR SINE MIR 31 226 -36 382 248 50 35 chr15 48311435 48311576 -37384178 - MIR3 SINE MIR -60 148 6 187 235 99 74 chr15 48312698 48312779 -37382975 - L2 LINE L2 -31 3282 3200 422 238 93 33 chr15 48313385 48313536 -37382218 + MIR3 SINE MIR 6 165 -43 194 340 15 71 chr15 48313677 48313874 -37381880 - L2 LINE L2 -165 3107 2922 200 280 0 0 chr15 48314499 48314549 -37381205 + CT-rich Low_complexity Low_complexity 1 50 0 421 280 65 30 chr15 48315638 48315806 -37379948 + MIR SINE MIR 53 226 -36 441 138 0 0 chr15 48316167 48316247 -37379507 + (TTCCC)n Simple_repeat Simple_repeat 1 80 0 547 104 0 42 chr15 48316347 48316443 -37379311 + MER61A LTR ERV1 252 343 0 490 277 20 66 chr15 48316459 48316809 -37378945 - L1M4 LINE L1 -3474 2672 2339 614 136 8 76 chr15 48316810 48316942 -37378812 - MER31A LTR ERV1 -361 124 2 3118 111 6 0 chr15 48317001 48317471 -37378283 + L1MA3 LINE L1 5374 5846 -459 323 167 0 14 chr15 48318251 48318312 -37377442 + (TA)n Simple_repeat Simple_repeat 2 63 -9 862 196 70 15 chr15 48318312 48318511 -37377243 + MER6B DNA MER2_type 1 210 0 323 167 0 14 chr15 48318511 48318521 -37377233 + (TA)n Simple_repeat Simple_repeat 63 72 0 1196 137 60 17 chr15 48319254 48319487 -37376267 + MER39B LTR ERV1 411 653 0 905 126 0 0 chr15 48319740 48319867 -37375887 + Charlie3 DNA MER1_type 37 163 -2547 1739 135 8 8 chr15 48320498 48320765 -37374989 - AluSx SINE Alu -45 267 1 366 200 29 122 chr15 48321870 48322075 -37373679 + MER53 DNA DNA 2 187 -2 353 280 100 72 chr15 48323653 48324014 -37371740 - L2 LINE L2 -2111 1203 833 885 207 15 0 chr15 48324730 48324928 -37370826 - L1MA7 LINE L1 -36 6255 6055 480 209 0 0 chr15 48324935 48325040 -37370714 - L1MB4 LINE L1 -10 6170 6066 2041 130 33 17 chr15 48325143 48325504 -37370250 - L1PB4 LINE L1 -104 6052 5686 1235 132 0 5 chr15 48325506 48325711 -37370043 - L1MB3 LINE L1 -75 6108 5905 1795 184 18 3 chr15 48325711 48326048 -37369706 - MER7A DNA MER2_type 0 346 7 1946 187 0 0 chr15 48326103 48326413 -37369341 - AluJb SINE Alu 0 312 3 842 87 0 16 chr15 48326416 48326543 -37369211 - L1MB3 LINE L1 -310 5873 5749 1322 241 17 17 chr15 48326920 48327277 -37368477 + MLT1C LTR MaLR 7 363 -104 401 232 0 10 chr15 48327502 48327601 -37368153 + MLT1C LTR MaLR 365 462 -5 284 127 18 0 chr15 48327823 48327878 -37367876 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr15 48328069 48328093 -37367661 + AT_rich Low_complexity Low_complexity 1 24 0 1429 54 0 0 chr15 48330117 48330284 -37365470 + AluSp SINE Alu 131 297 -16 865 220 36 0 chr15 48330974 48331142 -37364612 + AluJo SINE Alu 47 220 -92 835 72 0 40 chr15 48331460 48331585 -37364169 - L1M1 LINE L1 -524 5778 5659 2762 95 26 9 chr15 48331585 48332006 -37363748 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chr15 48332197 48332218 -37363536 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 48332756 48332777 -37362977 + AT_rich Low_complexity Low_complexity 1 21 0 438 146 34 34 chr15 48333031 48333356 -37362398 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 236 163 0 0 chr15 48333361 48333404 -37362350 + MLT2C2 LTR ERVL 420 462 -2 212 313 15 0 chr15 48334184 48334251 -37361503 + CT-rich Low_complexity Low_complexity 2 69 0 1008 260 98 34 chr15 48334431 48334819 -37360935 - MLT1G LTR MaLR -12 578 166 1060 217 86 39 chr15 48334819 48335237 -37360517 - MLT1C LTR MaLR 0 467 29 306 267 75 20 chr15 48335269 48335415 -37360339 - MLT1G LTR MaLR -376 173 20 1904 173 34 3 chr15 48335512 48335865 -37359889 + MLT1A1 LTR MaLR 1 364 -1 245 98 24 0 chr15 48336948 48336989 -37358765 + (CA)n Simple_repeat Simple_repeat 1 42 0 223 203 0 94 chr15 48337202 48337266 -37358488 + L3 LINE CR1 766 823 -754 721 206 16 0 chr15 48337645 48337791 -37357963 - FLAM_C SINE Alu 0 148 1 231 286 32 0 chr15 48338096 48338159 -37357595 - L2 LINE L2 -6 3307 3243 1701 125 4 0 chr15 48338166 48338422 -37357332 - Charlie3 DNA MER1_type -4 2706 2450 1869 93 53 50 chr15 48338774 48339097 -37356657 + THE1B LTR MaLR 41 364 0 3536 42 0 0 chr15 48339512 48339937 -37355817 + L1PA6 LINE L1 5729 6153 -1 922 146 18 0 chr15 48341084 48341316 -37354438 + GA-rich Low_complexity Low_complexity 1 236 0 21 71 0 0 chr15 48341554 48341596 -37354158 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr15 48341610 48341635 -37354119 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr15 48342101 48342143 -37353611 + AT_rich Low_complexity Low_complexity 1 42 0 1865 173 127 2 chr15 48342448 48342858 -37352896 - MER65C LTR ERV1 0 461 1 1256 140 0 6 chr15 48343112 48343291 -37352463 + AluSg/x SINE Alu 116 293 -17 357 24 0 0 chr15 48343291 48343333 -37352421 + (TA)n Simple_repeat Simple_repeat 2 43 0 1756 189 30 30 chr15 48343549 48343920 -37351834 - MLT1A2 LTR MaLR 0 374 4 699 241 21 49 chr15 48343999 48344419 -37351335 - LTR27 LTR ERV1 0 636 298 285 79 0 0 chr15 48344468 48344506 -37351248 - MER61B LTR ERV1 -286 139 102 1458 176 36 102 chr15 48344780 48345171 -37350583 - MLT1A1 LTR MaLR 0 365 1 2026 153 0 3 chr15 48345258 48345553 -37350201 + AluSx SINE Alu 1 294 -18 1599 172 4 4 chr15 48347065 48347332 -37348422 + AluJb SINE Alu 1 267 -45 350 331 139 14 chr15 48347437 48347860 -37347894 + L1MC/D LINE L1 4767 5242 -904 23 54 0 0 chr15 48348158 48348195 -37347559 + AT_rich Low_complexity Low_complexity 1 37 0 296 341 23 6 chr15 48348206 48348379 -37347375 + L1MC/D LINE L1 5605 5780 -2028 2258 82 4 0 chr15 48349552 48349895 -37345859 - AluSg SINE Alu 0 344 1 376 133 0 0 chr15 48350159 48350219 -37345535 - L1MC1 LINE L1 -19 6314 6255 1152 165 11 0 chr15 48350222 48350404 -37345350 - AluJb SINE Alu -10 302 119 1406 182 31 35 chr15 48350930 48351188 -37344566 + AluJo SINE Alu 25 281 -31 213 154 0 0 chr15 48351206 48351245 -37344509 + GA-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chr15 48351334 48351358 -37344396 + AT_rich Low_complexity Low_complexity 1 24 0 36 70 0 0 chr15 48351437 48351508 -37344246 + AT_rich Low_complexity Low_complexity 1 71 0 213 39 0 0 chr15 48353362 48353388 -37342366 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 239 245 11 0 chr15 48353438 48353532 -37342222 + (TA)n Simple_repeat Simple_repeat 1 95 0 202 200 0 0 chr15 48353544 48353579 -37342175 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 276 13 0 chr15 48354823 48354899 -37340855 + GA-rich Low_complexity Low_complexity 2 78 0 234 188 21 0 chr15 48355008 48355056 -37340698 + (CA)n Simple_repeat Simple_repeat 2 50 0 260 345 0 0 chr15 48355098 48355240 -37340514 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chr15 48355587 48355637 -37340117 + (TA)n Simple_repeat Simple_repeat 1 52 0 2501 124 37 10 chr15 48355728 48356131 -37339623 - L1MA5A LINE L1 -10 6287 5874 319 336 35 9 chr15 48356133 48356249 -37339505 - L1MEd LINE L1 -4892 1227 1109 332 209 45 73 chr15 48356381 48356491 -37339263 + L1MC4 LINE L1 7928 8034 -8 3463 129 20 0 chr15 48356570 48357066 -37338688 + MER84 LTR ERV1 2 507 0 220 271 0 0 chr15 48357552 48357601 -37338153 + (TG)n Simple_repeat Simple_repeat 1 49 0 369 0 0 0 chr15 48357983 48358024 -37337730 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chr15 48358036 48358092 -37337662 + (TA)n Simple_repeat Simple_repeat 1 57 0 2456 159 23 43 chr15 48358105 48358545 -37337209 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chr15 48358545 48358577 -37337177 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 364 256 84 88 chr15 48359547 48359762 -37335992 + MLT1L LTR MaLR 38 251 -364 33 0 0 0 chr15 48360084 48360117 -37335637 + AT_rich Low_complexity Low_complexity 1 33 0 238 289 0 0 chr15 48361188 48361240 -37334514 - L2 LINE L2 -7 3265 3214 693 155 0 0 chr15 48361640 48361743 -37334011 - FLAM_A SINE Alu -10 132 30 1337 198 28 0 chr15 48363021 48363268 -37332486 + L1MB5 LINE L1 5913 6166 -8 226 189 8 9 chr15 48363769 48364024 -37331730 + AluJo SINE Alu 1 290 -10 911 205 24 39 chr15 48364708 48364913 -37330841 - MLT1C LTR MaLR -1 466 265 403 294 54 34 chr15 48365038 48365242 -37330512 - HERVL LTR ERVL -2722 2932 2725 384 111 0 0 chr15 48365248 48365311 -37330443 + (TA)n Simple_repeat Simple_repeat 1 63 0 381 58 0 0 chr15 48365311 48365363 -37330391 + (GA)n Simple_repeat Simple_repeat 1 52 0 805 178 27 7 chr15 48365366 48365512 -37330242 - AluJb SINE Alu -30 282 134 447 206 35 1 chr15 48365556 48365670 -37330084 + L1MA9 LINE L1 6180 6292 -8 227 175 0 0 chr15 48365685 48365725 -37330029 + MLT1B LTR MaLR 168 207 -183 1431 115 46 0 chr15 48365984 48366201 -37329553 - MLT1B LTR MaLR -6 384 158 1283 146 6 12 chr15 48366201 48366427 -37329327 - MLT1B LTR MaLR 0 467 167 1422 171 0 42 chr15 48366449 48366735 -37329019 - L1MA9 LINE L1 -31 6281 6008 864 191 6 6 chr15 48366736 48366904 -37328850 - MLT1B LTR MaLR -210 180 13 219 80 60 20 chr15 48367111 48367161 -37328593 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 682 99 60 12 chr15 48367179 48367587 -37328167 + (TCTA)n Simple_repeat Simple_repeat 1 427 0 1105 54 15 25 chr15 48367627 48367835 -37327919 + (TCTA)n Simple_repeat Simple_repeat 1 205 0 313 273 66 62 chr15 48368324 48368551 -37327203 + L2 LINE L2 3086 3313 0 22 0 0 0 chr15 48368914 48368936 -37326818 + AT_rich Low_complexity Low_complexity 1 22 0 309 164 33 0 chr15 48369061 48369122 -37326632 + FLAM SINE Alu 70 132 -1 223 160 0 40 chr15 48369123 48369147 -37326607 + A-rich Low_complexity Low_complexity 1 24 -24 1701 142 9 105 chr15 48369147 48369309 -37326445 + AluJb SINE Alu 2 118 -184 2353 64 0 3 chr15 48369309 48369641 -37326113 + AluY SINE Alu 1 331 0 1701 142 9 105 chr15 48369641 48369809 -37325945 + AluJb SINE Alu 118 301 -1 223 160 0 40 chr15 48369809 48369834 -37325920 + A-rich Low_complexity Low_complexity 24 48 0 21 36 0 0 chr15 48369997 48370025 -37325729 + AT_rich Low_complexity Low_complexity 1 28 0 34 65 0 0 chr15 48370117 48370179 -37325575 + AT_rich Low_complexity Low_complexity 1 62 0 214 77 0 0 chr15 48370788 48370814 -37324940 + (T)n Simple_repeat Simple_repeat 1 26 0 3487 89 22 26 chr15 48371441 48371946 -37323808 + L1PA13 LINE L1 5656 6158 -5 2372 243 97 42 chr15 48372220 48373001 -37322753 - LTR1B LTR ERV1 0 826 3 848 248 13 9 chr15 48373019 48373249 -37322505 + MER33 DNA MER1_type 10 240 -84 629 233 16 0 chr15 48373254 48373383 -37322371 - MLT1C LTR MaLR -6 461 331 25 31 0 0 chr15 48373984 48374016 -37321738 + AT_rich Low_complexity Low_complexity 1 32 0 2034 38 4 0 chr15 48374616 48374851 -37320903 - L1PA4 LINE L1 -2 6153 5918 16559 34 6 5 chr15 48377641 48379933 -37315821 + L1P2 LINE L1 3374 5670 -485 1551 172 113 168 chr15 48380552 48380720 -37315034 - LTR8A LTR ERV1 0 727 551 3454 125 16 12 chr15 48380720 48381231 -37314523 + MER75 DNA T2_type 2 514 0 1551 172 113 168 chr15 48381231 48381831 -37313923 - LTR8A LTR ERV1 -176 551 1 3337 175 61 8 chr15 48382197 48382787 -37312967 + LTR26E LTR ERV1 2 622 0 1398 160 106 83 chr15 48383013 48383400 -37312354 - LTR8A LTR ERV1 0 727 332 354 183 28 14 chr15 48383402 48383473 -37312281 + MER84 LTR ERVI 3 74 -433 2933 139 76 6 chr15 48383473 48383946 -37311808 + MER84 LTR ERV1 2 507 0 1720 125 4 36 chr15 48383946 48384029 -37311725 - LTR8A LTR ERV1 -391 336 252 2992 81 3 16 chr15 48384029 48384398 -37311356 - THE1B LTR MaLR 0 364 1 1720 125 4 36 chr15 48384398 48384595 -37311159 - LTR8A LTR ERV1 -475 252 65 211 242 15 61 chr15 48385385 48385451 -37310303 - MIR SINE MIR -187 75 13 180 246 46 0 chr15 48386504 48386569 -37309185 - MIR SINE MIR -121 141 74 428 247 0 21 chr15 48386733 48386826 -37308928 + L2 LINE L2 3210 3300 -13 234 0 0 0 chr15 48386826 48386852 -37308902 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 211 343 32 60 chr15 48386943 48387191 -37308563 - L2 LINE L2 -222 3050 2810 370 257 92 9 chr15 48387466 48387575 -37308179 - MIR SINE MIR -26 236 119 924 271 62 3 chr15 48387822 48388158 -37307596 - HAL1 LINE L1 -648 1859 1504 1439 224 105 64 chr15 48388158 48388797 -37306957 - HAL1 LINE L1 -886 1621 957 577 267 46 1 chr15 48388919 48389080 -37306674 - MIR SINE MIR -32 176 2 862 288 24 0 chr15 48389102 48389339 -37306415 - MIR SINE MIR -6 256 11 287 222 99 0 chr15 48389346 48389427 -37306327 + MIR SINE MIR 117 205 -57 227 222 17 154 chr15 48389476 48389593 -37306161 + MIR3 SINE MIR 98 198 -10 1882 193 55 115 chr15 48390860 48391424 -37304330 + MLT1E LTR MaLR 64 593 0 280 310 70 45 chr15 48391616 48391816 -37303938 + MIR3 SINE MIR 3 207 -1 180 152 0 0 chr15 48391864 48391897 -37303857 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 646 319 131 34 chr15 48392079 48392521 -37303233 + MLT1K LTR MaLR 102 586 -2 267 54 0 0 chr15 48393127 48393164 -37302590 + (TG)n Simple_repeat Simple_repeat 2 38 0 545 301 62 48 chr15 48393877 48394213 -37301541 - MER102b DNA MER1_type 0 341 1 335 250 0 0 chr15 48394701 48394781 -37300973 - L1M2 LINE L1 -6760 89 10 262 305 86 19 chr15 48396089 48396194 -37299560 - MIR SINE MIR -79 129 18 198 0 0 0 chr15 48396417 48396439 -37299315 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 240 226 0 0 chr15 48396667 48396729 -37299025 + (CA)n Simple_repeat Simple_repeat 1 62 0 352 283 51 45 chr15 48397542 48397719 -37298035 - L3 LINE CR1 -108 1469 1292 183 211 197 13 chr15 48397762 48397838 -37297916 + MIR3 SINE MIR 91 180 -28 461 327 0 38 chr15 48398128 48398287 -37297467 + MIR3 SINE MIR 21 173 -35 387 347 148 20 chr15 48398503 48398699 -37297055 + MIR SINE MIR 23 243 -19 280 197 13 13 chr15 48398842 48398918 -37296836 + CT-rich Low_complexity Low_complexity 2 77 0 349 307 21 21 chr15 48399376 48399516 -37296238 + MIR3 SINE MIR 43 182 -26 409 264 114 65 chr15 48399573 48399819 -37295935 - L2 LINE L2 -1 3271 3014 359 225 11 34 chr15 48400115 48400204 -37295550 + MER58C DNA MER1_type 5 91 -124 1982 181 17 79 chr15 48400209 48400584 -37295170 - L1MB8 LINE L1 -7 6171 5829 1576 102 13 0 chr15 48400584 48400810 -37294944 - L1MA8 LINE L1 -4 6287 6059 1982 181 17 79 chr15 48400810 48400905 -37294849 - L1MB8 LINE L1 -349 5829 5730 290 194 45 0 chr15 48400909 48400976 -37294778 + MER58C DNA MER1_type 127 196 -19 527 220 18 9 chr15 48403303 48403412 -37292342 + MER103 DNA DNA 11 120 -46 307 246 17 42 chr15 48403472 48403590 -37292164 + MLT1H LTR MaLR 50 164 -385 2498 168 55 19 chr15 48403832 48403899 -37291855 - MLT1D LTR MaLR 0 505 442 2352 94 0 0 chr15 48403899 48404197 -37291557 + AluY SINE Alu 1 298 -13 2498 168 55 19 chr15 48404197 48404616 -37291138 - MLT1D LTR MaLR -63 442 1 243 137 0 84 chr15 48404836 48404899 -37290855 - MIR3 SINE MIR -38 170 115 240 331 41 41 chr15 48405417 48405562 -37290192 + MIR SINE MIR 60 205 -3 453 309 29 7 chr15 48407258 48407397 -37288357 + MIR SINE MIR 44 185 -77 371 233 62 31 chr15 48407440 48407569 -37288185 + MIR SINE MIR 115 247 -15 198 172 17 69 chr15 48407535 48407593 -37288161 + L2 LINE L2 3218 3272 0 * 281 271 260 39 chr15 48407606 48407990 -37287764 - L2 LINE L2 0 3313 2845 957 260 142 8 chr15 48407999 48408365 -37287389 - MLT1J2 LTR MaLR -35 415 1 380 290 192 0 chr15 48408507 48408700 -37287054 - L2 LINE L2 -534 2780 2551 378 354 42 0 chr15 48409056 48409200 -37286554 - MIR SINE MIR -74 188 39 1325 119 109 0 chr15 48409562 48409763 -37285991 - AluSg/x SINE Alu -1 311 89 347 352 62 6 chr15 48410077 48410256 -37285498 + MER5A DNA MER1_type 1 189 0 343 238 214 16 chr15 48410256 48410380 -37285374 - MIR3 SINE MIR -53 155 7 430 230 286 0 chr15 48410892 48411018 -37284736 - MER5A DNA MER1_type -7 182 21 226 310 78 23 chr15 48411083 48411212 -37284542 + L2 LINE L2 2918 3053 -219 2623 37 0 0 chr15 48411756 48412052 -37283702 + AluY SINE Alu 1 296 -15 936 232 5 0 chr15 48412769 48412976 -37282778 + L1ME4a LINE L1 5637 5844 -277 642 216 168 16 chr15 48412978 48413169 -37282585 - MIR SINE MIR -3 259 49 1434 153 0 0 chr15 48413238 48413453 -37282301 + L1PB3 LINE L1 5940 6154 0 1814 156 0 4 chr15 48413479 48413755 -37281999 + AluJb SINE Alu 4 278 -34 342 0 0 0 chr15 48413758 48413796 -37281958 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 197 319 58 0 chr15 48414401 48414470 -37281284 + MIR3 SINE MIR 82 154 -54 479 209 16 93 chr15 48414607 48414740 -37281014 - MIR SINE MIR -67 141 65 2470 98 0 0 chr15 48414740 48415045 -37280709 + AluSx SINE Alu 1 305 -7 479 209 16 93 chr15 48415045 48415092 -37280662 - MIR SINE MIR -143 65 16 209 303 0 53 chr15 48416150 48416226 -37279528 + MIR3 SINE MIR 110 181 -27 270 87 0 145 chr15 48416569 48416638 -37279116 - MLT2C2 LTR ERVL 0 520 462 221 250 0 0 chr15 48416638 48416682 -37279072 + (TATG)n Simple_repeat Simple_repeat 3 46 0 1838 183 82 18 chr15 48416706 48417094 -37278660 - MLT2C2 LTR ERVL -51 413 1 3853 135 17 40 chr15 48417354 48417589 -37278165 - LTR48B LTR ERV1 -1 643 404 2373 86 7 0 chr15 48417589 48417879 -37277875 - AluSc SINE Alu -17 292 1 3853 135 17 40 chr15 48417879 48418301 -37277453 - LTR48B LTR ERV1 -240 404 1 24 0 0 0 chr15 48418575 48418599 -37277155 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr15 48418797 48418824 -37276930 + AT_rich Low_complexity Low_complexity 1 27 0 225 243 19 17 chr15 48419286 48419406 -37276348 + MIR SINE MIR 14 212 -50 247 294 53 80 chr15 48419947 48420134 -37275620 - MIR SINE MIR -6 256 75 2067 117 0 0 chr15 48420163 48420445 -37275309 - AluSx SINE Alu 0 312 31 4327 136 43 85 chr15 48420445 48421449 -37274305 + pTR5 LTR ERV1 743 2025 -413 360 235 10 0 chr15 48421449 48421547 -37274207 + LTR30 LTR ERV1 544 642 -80 1154 124 62 5 chr15 48421548 48421742 -37274012 + LTR12 LTR ERV1 377 581 -133 251 88 0 0 chr15 48421742 48421776 -37273978 - AluSx SINE Alu -266 34 1 2097 132 13 7 chr15 48422156 48422459 -37273295 + AluJb SINE Alu 1 305 -7 228 176 78 0 chr15 48422605 48422656 -37273098 + MLT1K LTR MaLR 529 583 -5 364 290 0 0 chr15 48422784 48422884 -37272870 - MER97c DNA MER1_type? 0 1090 991 1587 197 55 72 chr15 48423353 48423853 -37271901 - MER97b DNA MER1_type? -280 773 281 2159 62 7 0 chr15 48423853 48424127 -37271627 + L1PA5 LINE L1 5878 6153 -1 1587 197 55 72 chr15 48424127 48424138 -37271616 - MER97b DNA MER1_type? -772 281 271 35 41 0 0 chr15 48424138 48424187 -37271567 + AT_rich Low_complexity Low_complexity 1 49 0 2019 142 24 3 chr15 48424194 48424489 -37271265 + AluJb SINE Alu 1 301 -11 327 253 20 10 chr15 48424540 48424639 -37271115 - MER97c DNA MER1_type? -847 243 144 288 247 0 14 chr15 48424620 48424693 -37271061 + MER45A DNA AcHobo 86 157 -21 * 248 359 49 7 chr15 48425212 48425354 -37270400 - MIR SINE MIR -81 181 34 237 229 33 33 chr15 48425820 48425881 -37269873 + MIR SINE MIR 1 61 -201 7577 32 1 3 chr15 48425981 48427548 -37268206 + L1PA4 LINE L1 4584 6155 0 480 289 118 16 chr15 48427743 48427930 -37267824 + MIR SINE MIR 56 261 -1 933 177 133 0 chr15 48428223 48428404 -37267350 + MER3 DNA MER1_type 5 209 0 1207 285 70 8 chr15 48429104 48429574 -37266180 + LTR33 LTR ERVL 23 521 0 265 186 35 70 chr15 48431051 48431137 -37264617 + Zaphod DNA AcHobo 3479 3561 -470 351 318 71 56 chr15 48431579 48431663 -37264091 - MIR SINE MIR -34 228 147 2372 90 0 10 chr15 48431663 48431962 -37263792 - AluSg SINE Alu -14 296 1 351 318 71 56 chr15 48431962 48432075 -37263679 - MIR SINE MIR -115 147 28 229 261 159 0 chr15 48432336 48432405 -37263349 + MIR SINE MIR 41 120 -142 562 224 224 0 chr15 48432607 48432759 -37262995 + MER5A DNA MER1_type 4 189 0 334 287 64 16 chr15 48432891 48433079 -37262675 - MER117 DNA MER1_type 0 197 1 288 274 14 32 chr15 48434334 48434458 -37261296 + GA-rich Low_complexity Low_complexity 1 211 0 184 274 176 59 chr15 48434482 48434584 -37261170 + MIR SINE MIR 2 115 -147 2089 119 34 0 chr15 48434771 48435064 -37260690 + AluSx SINE Alu 2 304 -8 239 0 0 31 chr15 48435214 48435246 -37260508 + (TC)n Simple_repeat Simple_repeat 1 31 0 1954 162 0 46 chr15 48435311 48435638 -37260116 + AluJb SINE Alu 1 312 0 325 319 70 19 chr15 48435892 48436049 -37259705 + MIR3 SINE MIR 28 192 -16 392 250 189 79 chr15 48436102 48436180 -37259574 + LTR33 LTR ERVL 14 82 -439 2294 106 7 0 chr15 48436180 48436473 -37259281 - AluSg SINE Alu -15 295 1 392 250 189 79 chr15 48436473 48436786 -37258968 + LTR33 LTR ERVL 82 448 -73 230 347 94 30 chr15 48436930 48437227 -37258527 - L2 LINE L2 -338 2976 2661 189 314 0 29 chr15 48438036 48438106 -37257648 - L2 LINE L2 -679 2635 2568 503 297 222 4 chr15 48438126 48438365 -37257389 - L2 LINE L2 -1178 2136 1846 317 240 40 0 chr15 48438380 48438455 -37257299 - MIR SINE MIR -92 170 93 383 174 65 0 chr15 48438479 48438617 -37257137 + (ATGGTG)n Simple_repeat Simple_repeat 6 152 0 347 268 179 0 chr15 48438754 48438877 -37256877 + MIR SINE MIR 111 255 -7 658 277 27 89 chr15 48439294 48439428 -37256326 + L2 LINE L2 2998 3139 -174 2299 106 0 0 chr15 48439428 48439721 -37256033 - AluSx SINE Alu -19 293 1 658 277 27 89 chr15 48439721 48439922 -37255832 + L2 LINE L2 3139 3312 -1 237 83 0 0 chr15 48440849 48440885 -37254869 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 504 213 147 22 chr15 48440947 48441083 -37254671 + MIR SINE MIR 80 232 -30 200 256 0 0 chr15 48441056 48441095 -37254659 + L2 LINE L2 3210 3248 -24 * 187 284 39 65 chr15 48441100 48441255 -37254499 + L2 LINE L2 2823 2973 -299 230 276 81 24 chr15 48441890 48442013 -37253741 - L2 LINE L2 -219 3053 2924 190 346 167 4 chr15 48442084 48442347 -37253407 - L2 LINE L2 -554 2760 2455 199 218 77 64 chr15 48442514 48442592 -37253162 - L3 LINE CR1 -187 1390 1312 315 266 55 28 chr15 48442639 48442748 -37253006 - MIR SINE MIR -10 252 141 518 264 14 7 chr15 48442759 48442899 -37252855 + MIR SINE MIR 34 174 -88 236 198 344 17 chr15 48442961 48443078 -37252676 - MIR SINE MIR -110 152 3 227 338 62 48 chr15 48443221 48443366 -37252388 - L2 LINE L2 -2 3311 3165 771 230 89 40 chr15 48443429 48443677 -37252077 + L3 LINE CR1 770 1029 -548 357 340 64 15 chr15 48444019 48444222 -37251532 - MIR SINE MIR -39 223 11 1153 145 18 57 chr15 48445983 48446210 -37249544 + MER20 DNA MER1_type 2 219 0 2371 99 3 3 chr15 48448185 48448554 -37247200 + AluSp SINE Alu 1 369 0 282 300 30 20 chr15 48450233 48450333 -37245421 + L2 LINE L2 3172 3272 0 186 253 330 0 chr15 48450695 48450786 -37244968 - L2 LINE L2 -6 3266 3146 278 222 22 44 chr15 48451281 48451371 -37244383 - MIR3 SINE MIR -10 198 111 280 256 64 32 chr15 48451449 48451574 -37244180 + L1ME LINE L1 5602 5730 -391 185 0 0 39 chr15 48451904 48451930 -37243824 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1730 167 14 11 chr15 48451938 48452213 -37243541 - AluJo SINE Alu -32 280 5 567 295 58 82 chr15 48452407 48452586 -37243168 - L2 LINE L2 -8 3264 3082 700 271 170 31 chr15 48452586 48453033 -37242721 - MLT1J LTR MaLR -2 509 1 567 295 58 82 chr15 48453033 48453229 -37242525 - L2 LINE L2 -190 3082 2898 222 182 36 18 chr15 48453200 48453255 -37242499 + MIR SINE MIR 16 71 -137 * 460 212 119 17 chr15 48453699 48453817 -37241937 - MIR SINE MIR -41 221 92 221 139 28 0 chr15 48454044 48454080 -37241674 + MIR SINE MIR 110 146 -62 258 255 75 11 chr15 48454724 48454818 -37240936 + L2 LINE L2 2965 3064 -208 1170 212 23 80 chr15 48455643 48455992 -37239762 - MLT1A2 LTR MaLR 0 374 46 884 160 125 30 chr15 48456649 48456849 -37238905 - MER20 DNA MER1_type 0 219 1 2681 104 92 72 chr15 48457200 48457409 -37238345 + MER4B LTR ERV1 1 204 -575 2112 117 4 0 chr15 48457409 48457682 -37238072 + AluSx SINE Alu 1 274 -38 1483 11 0 16 chr15 48457683 48457866 -37237888 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 432 0 0 0 chr15 48457866 48457914 -37237840 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 2681 104 92 72 chr15 48457914 48458305 -37237449 + MER4B LTR ERV1 203 779 0 505 235 34 8 chr15 48458611 48458730 -37237024 - MLT1I LTR MaLR -210 199 78 1133 156 46 46 chr15 48459086 48459304 -37236450 - MER20 DNA MER1_type 0 219 2 249 274 133 52 chr15 48459396 48459531 -37236223 - L2 LINE L2 -5 3267 3122 548 265 40 7 chr15 48459682 48459833 -37235921 - MIR SINE MIR -50 212 57 336 279 10 29 chr15 48460802 48460906 -37234848 - MLT1K LTR MaLR -318 270 169 300 289 90 65 chr15 48460922 48461123 -37234631 - L1MC4a LINE L1 -1749 6059 5854 460 211 217 26 chr15 48461441 48461593 -37234161 + MER5A DNA MER1_type 9 189 0 449 287 109 43 chr15 48463114 48463344 -37232410 - MIR SINE MIR 0 262 18 255 260 71 53 chr15 48463605 48463774 -37231980 + L2 LINE L2 3106 3277 -36 367 287 212 13 chr15 48464467 48464854 -37230900 - L2 LINE L2 -6 3307 2844 414 272 71 50 chr15 48465621 48465852 -37229902 - MIR SINE MIR -16 246 20 265 168 0 0 chr15 48466066 48466115 -37229639 + MIR SINE MIR 102 145 -63 205 309 71 12 chr15 48466241 48466325 -37229429 - L2 LINE L2 -166 3106 3018 219 222 20 10 chr15 48466367 48466438 -37229316 + MIR SINE MIR 84 154 -108 376 311 52 7 chr15 48466464 48466599 -37229155 + MIR3 SINE MIR 5 145 -63 244 240 20 0 chr15 48466620 48466670 -37229084 + MIR SINE MIR 93 143 -65 363 241 102 0 chr15 48468623 48468731 -37227023 - MIR3 SINE MIR -84 124 6 201 227 0 0 chr15 48468817 48468861 -37226893 + G-rich Low_complexity Low_complexity 1 44 0 385 269 6 75 chr15 48469065 48469225 -37226529 + MIR3 SINE MIR 6 154 -54 202 316 123 18 chr15 48469231 48469345 -37226409 + MER5A DNA MER1_type 16 141 -48 * 324 253 12 36 chr15 48469263 48469346 -37226408 - MER5A DNA MER1_type -50 139 59 288 77 0 0 chr15 48469593 48469632 -37226122 + (TG)n Simple_repeat Simple_repeat 2 40 0 226 331 37 15 chr15 48469693 48469829 -37225925 + MIR SINE MIR 33 171 -91 822 291 94 7 chr15 48470041 48470478 -37225276 - LTR33 LTR ERVL -1 520 46 306 315 70 14 chr15 48470584 48470727 -37225027 + MIR3 SINE MIR 38 188 -20 512 272 131 10 chr15 48471961 48472167 -37223587 + MIR SINE MIR 20 250 -12 395 247 95 19 chr15 48472479 48472637 -37223117 - MIR3 SINE MIR -23 185 16 222 258 56 45 chr15 48472805 48472894 -37222860 + MIR SINE MIR 103 192 -70 199 299 64 21 chr15 48473064 48473251 -37222503 + L2 LINE L2 2889 3083 -189 2028 296 206 23 chr15 48474115 48476110 -37219644 + L2 LINE L2 254 2614 -700 418 252 35 17 chr15 48476473 48476588 -37219166 + L2 LINE L2 2639 2755 -559 250 291 12 23 chr15 48476811 48476897 -37218857 - MLT1J LTR MaLR -331 180 96 1550 157 4 8 chr15 48476902 48477163 -37218591 - AluJo SINE Alu -25 287 28 190 333 68 17 chr15 48477347 48477464 -37218290 - L2 LINE L2 -9 3263 3141 1299 144 0 10 chr15 48477898 48478128 -37217626 - AluJb SINE Alu 0 312 85 319 255 136 33 chr15 48478130 48478314 -37217440 - L2 LINE L2 -601 2713 2511 1233 323 104 20 chr15 48478627 48479544 -37216210 - L2 LINE L2 -520 2794 1801 2277 97 0 0 chr15 48480448 48480748 -37215006 - AluSq SINE Alu -13 300 1 202 243 29 71 chr15 48480861 48480931 -37214823 - L2 LINE L2 -5 3308 3242 938 151 211 0 chr15 48481004 48481189 -37214565 - MER58A DNA MER1_type 0 224 1 342 331 26 26 chr15 48481519 48481670 -37214084 - MER5A DNA MER1_type -1 188 38 423 305 57 0 chr15 48481945 48482086 -37213668 + MIR SINE MIR 60 208 -54 268 375 0 8 chr15 48482152 48482272 -37213482 + MIR SINE MIR 27 145 -63 222 362 21 43 chr15 48482550 48482691 -37213063 - L2 LINE L2 -2 3270 3133 243 241 0 0 chr15 48482737 48482795 -37212959 + (ATG)n Simple_repeat Simple_repeat 2 59 0 211 330 117 0 chr15 48482875 48482978 -37212776 - MIR SINE MIR -61 147 33 3885 142 46 1 chr15 48483511 48484180 -37211574 + L1MB3 LINE L1 5483 6181 -2 377 245 239 19 chr15 48484223 48484382 -37211372 + L1ME4a LINE L1 5927 6120 -1 1730 168 3 7 chr15 48484386 48484695 -37211059 + AluJb SINE Alu 1 308 -4 1228 237 42 2 chr15 48484937 48485254 -37210500 + L1ME1 LINE L1 5823 6147 -19 1645 129 0 109 chr15 48485297 48485647 -37210107 - AluJo SINE Alu 0 312 1 229 319 121 0 chr15 48487561 48487652 -37208102 - MIR3 SINE MIR -2 206 105 223 313 16 0 chr15 48487712 48487776 -37207978 - L3 LINE CR1 -2 1575 1511 533 261 48 20 chr15 48487908 48488111 -37207643 - MIR SINE MIR -11 251 37 512 324 73 31 chr15 48488278 48488537 -37207217 + L2 LINE L2 3044 3313 0 1038 152 0 11 chr15 48488539 48488813 -37206941 + (TGGA)n Simple_repeat Simple_repeat 4 272 0 449 242 101 20 chr15 48489360 48489533 -37206221 + MIR SINE MIR 33 222 -40 898 276 97 18 chr15 48489928 48490309 -37205445 - LTR16C LTR ERVL -1 490 80 226 320 148 25 chr15 48490395 48490639 -37205115 + L2 LINE L2 1917 2190 -1124 * 378 269 10 104 chr15 48490630 48490776 -37204978 + MER5A DNA MER1_type 14 139 -50 715 239 62 0 chr15 48490776 48490952 -37204802 - MER53 DNA DNA 0 189 3 378 269 10 104 chr15 48490952 48490998 -37204756 + MER5A DNA MER1_type 139 188 -1 319 283 196 55 chr15 48490998 48491355 -37204399 + L2 LINE L2 2156 2461 -853 2108 168 98 25 chr15 48491355 48491825 -37203929 + MLT1D LTR MaLR 2 505 0 319 283 196 55 chr15 48491825 48492085 -37203669 + L2 LINE L2 2461 2861 -453 396 264 16 32 chr15 48492365 48492490 -37203264 + MER5A DNA MER1_type 26 148 -41 297 286 29 19 chr15 48492553 48492658 -37203096 - MIR SINE MIR -92 170 65 2234 214 30 41 chr15 48492758 48493365 -37202389 - L1M4 LINE L1 -866 5516 4917 747 208 81 0 chr15 48493365 48493538 -37202216 - L1M4 LINE L1 -1363 4783 4597 1766 153 51 7 chr15 48493540 48493834 -37201920 - MLT1A1 LTR MaLR 0 365 59 4684 197 49 34 chr15 48493934 48495196 -37200558 - L1M4 LINE L1 -1796 4350 3070 37244 73 8 7 chr15 48495201 48497113 -37198641 + L1PA6 LINE L1 433 2342 -3812 258 106 0 0 chr15 48497113 48497160 -37198594 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 37244 73 8 7 chr15 48497160 48500964 -37194790 + L1PA6 LINE L1 2342 6154 0 12569 185 39 17 chr15 48500971 48501735 -37194019 - L1M4 LINE L1 -2936 3446 2701 2283 72 0 3 chr15 48501735 48502028 -37193726 - AluY SINE Alu -19 292 1 12569 185 39 17 chr15 48502028 48504616 -37191138 - L1M4 LINE L1 -3681 2701 21 518 267 54 11 chr15 48504687 48504872 -37190882 - L1ME LINE L1 -301 5820 5645 1365 133 19 5 chr15 48505782 48505992 -37189762 + MER20 DNA MER1_type 1 213 -6 941 279 178 29 chr15 48508497 48509041 -37186713 - L1MC4a LINE L1 -1876 5932 5308 322 235 134 34 chr15 48509459 48509578 -37186176 - L1ME4a LINE L1 -177 5944 5814 234 107 0 71 chr15 48509603 48509659 -37186095 - L1PB1 LINE L1 -2 6149 6098 2450 86 0 0 chr15 48509675 48509978 -37185776 - AluY SINE Alu -7 304 2 1148 75 7 20 chr15 48509978 48510124 -37185630 - AluY SINE Alu -167 144 1 1301 119 5 5 chr15 48510124 48510326 -37185428 - L1PB1 LINE L1 -45 6106 5905 436 356 57 4 chr15 48510326 48510556 -37185198 - L1ME4a LINE L1 -291 5830 5589 423 291 137 34 chr15 48510632 48511020 -37184734 + LTR67 LTR ERVL 122 549 -8 2585 86 21 86 chr15 48511144 48511185 -37184569 - MLT2A1 LTR ERVL 0 444 402 312 27 0 0 chr15 48511185 48511222 -37184532 + (TG)n Simple_repeat Simple_repeat 2 38 0 2585 86 21 86 chr15 48511222 48511655 -37184099 - MLT2A1 LTR ERVL -42 402 1 581 297 81 5 chr15 48511730 48511939 -37183815 - MIR SINE MIR -15 247 23 549 330 87 9 chr15 48512286 48512504 -37183250 - MIR SINE MIR 0 262 28 1954 228 122 21 chr15 48512524 48513187 -37182567 + L1MC4 LINE L1 7312 8041 -1 400 321 38 19 chr15 48513260 48513472 -37182282 - MIR SINE MIR -26 236 21 31 26 0 0 chr15 48514191 48514229 -37181525 + AT_rich Low_complexity Low_complexity 1 38 0 1903 175 3 0 chr15 48514251 48514548 -37181206 - AluJo SINE Alu -14 298 1 188 224 0 41 chr15 48514653 48514702 -37181052 + MIR SINE MIR 108 154 -108 524 267 14 14 chr15 48514794 48514940 -37180814 + MER5B DNA MER1_type 25 170 -8 211 196 0 20 chr15 48515276 48515327 -37180427 + L2 LINE L2 3264 3313 0 544 289 36 18 chr15 48515429 48515595 -37180159 - MIR SINE MIR -67 195 27 258 272 71 65 chr15 48515624 48515793 -37179961 - MIR3 SINE MIR -18 190 21 328 197 84 0 chr15 48516359 48516430 -37179324 - L3 LINE CR1 -98 1479 1403 1073 294 28 23 chr15 48517146 48517537 -37178217 - MLT1J LTR MaLR -18 493 101 340 282 127 0 chr15 48518096 48518206 -37177548 - MIR SINE MIR -59 203 80 378 245 10 20 chr15 48518348 48518450 -37177304 - MER103 DNA DNA -3 163 63 195 69 0 0 chr15 48519146 48519175 -37176579 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 255 257 71 0 chr15 48520191 48520261 -37175493 + MIR3 SINE MIR 82 156 -52 377 317 54 0 chr15 48520603 48520770 -37174984 + MIR3 SINE MIR 25 200 -8 33 0 0 0 chr15 48521295 48521328 -37174426 + AT_rich Low_complexity Low_complexity 1 33 0 2311 68 0 65 chr15 48522156 48522479 -37173275 - AluSp SINE Alu -10 303 2 465 284 64 44 chr15 48522636 48522840 -37172914 + MIR SINE MIR 28 235 -27 549 242 167 31 chr15 48523398 48523625 -37172129 + MIR SINE MIR 5 262 0 1348 189 65 26 chr15 48525636 48525975 -37169779 + MLT1A1 LTR MaLR 14 365 0 249 203 119 32 chr15 48525982 48526083 -37169671 - MIR3 SINE MIR -40 168 57 327 304 14 14 chr15 48526293 48526434 -37169320 - L1MCa LINE L1 -1339 6983 2006 388 295 54 90 chr15 48527887 48528165 -37167589 - L1MCa LINE L1 -5019 1397 1130 512 258 102 18 chr15 48530072 48530239 -37165515 + MLT1K LTR MaLR 91 271 -317 460 309 16 21 chr15 48530313 48530504 -37165250 + MLT1K LTR MaLR 399 588 0 474 193 9 35 chr15 48531468 48531582 -37164172 - MER103 DNA DNA -12 154 44 197 368 0 11 chr15 48531789 48531876 -37163878 - MIR3 SINE MIR -35 173 88 295 353 7 0 chr15 48531876 48532012 -37163742 - LTR67 LTR ERVL -3 554 418 21 0 0 0 chr15 48533399 48533420 -37162334 + AT_rich Low_complexity Low_complexity 1 21 0 297 119 102 0 chr15 48533836 48533895 -37161859 + MIR SINE MIR 82 146 -62 229 323 69 39 chr15 48533954 48534084 -37161670 - MIR SINE MIR -47 215 82 516 288 0 11 chr15 48534090 48534165 -37161589 - MER104 DNA Tc2 -1721 177 103 2513 84 0 0 chr15 48534165 48534473 -37161281 + AluY SINE Alu 1 308 -3 516 288 0 11 chr15 48534473 48534574 -37161180 - MER104 DNA Tc2 -1795 103 3 363 259 21 84 chr15 48535492 48535536 -37160218 - MIR SINE MIR -66 196 151 2129 119 0 35 chr15 48535536 48535854 -37159900 - AluSg SINE Alu -3 307 1 363 259 21 84 chr15 48535854 48535952 -37159802 - MIR SINE MIR -111 151 63 255 263 0 0 chr15 48535965 48536022 -37159732 + MIR SINE MIR 201 257 -5 465 19 0 0 chr15 48536170 48536224 -37159530 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 283 9 38 chr15 48536845 48536951 -37158803 + CT-rich Low_complexity Low_complexity 4 106 0 943 118 20 51 chr15 48536999 48537194 -37158560 - MER53 DNA DNA 0 189 1 547 266 7 14 chr15 48537733 48537876 -37157878 - MIR SINE MIR -97 165 24 826 254 58 29 chr15 48537891 48538131 -37157623 - MIR SINE MIR 0 262 16 309 272 0 75 chr15 48538752 48538925 -37156829 + C-rich Low_complexity Low_complexity 2 161 0 274 360 43 0 chr15 48539892 48540053 -37155701 - MIR SINE MIR -21 241 74 251 338 149 5 chr15 48540191 48540413 -37155341 + L2 LINE L2 3015 3268 -4 244 335 45 7 chr15 48540954 48541093 -37154661 + MIR SINE MIR 12 154 -63 201 74 0 0 chr15 48542859 48542886 -37152868 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 223 181 28 28 chr15 48542888 48542943 -37152811 + GA-rich Low_complexity Low_complexity 3 60 -14 1665 176 65 3 chr15 48542943 48543283 -37152471 - MLT1A1 LTR MaLR -2 363 3 223 181 28 28 chr15 48543283 48543299 -37152455 + GA-rich Low_complexity Low_complexity 59 74 0 2086 124 0 3 chr15 48543584 48543874 -37151880 + AluSc SINE Alu 1 289 -20 195 267 0 0 chr15 48543988 48544033 -37151721 + MIR SINE MIR 100 144 -118 331 325 50 8 chr15 48544233 48544353 -37151401 + MIR SINE MIR 15 139 -123 2237 106 0 28 chr15 48545996 48546317 -37149437 + AluSx SINE Alu 1 312 0 213 209 70 105 chr15 48546540 48546626 -37149128 - MIR SINE MIR -71 191 109 197 289 19 0 chr15 48547090 48547142 -37148612 - MIR3 SINE MIR -46 162 110 244 259 19 65 chr15 48547806 48547914 -37147840 + MIR SINE MIR 49 151 -111 378 302 43 14 chr15 48548409 48548548 -37147206 + MIR3 SINE MIR 17 159 -49 247 224 0 0 chr15 48549106 48549155 -37146599 - MLT1K LTR MaLR -339 249 201 27 0 0 0 chr15 48549688 48549715 -37146039 + AT_rich Low_complexity Low_complexity 1 27 0 282 95 0 0 chr15 48549989 48550031 -37145723 + (GA)n Simple_repeat Simple_repeat 1 42 0 491 69 14 0 chr15 48550442 48550514 -37145240 + (TG)n Simple_repeat Simple_repeat 2 74 0 199 327 117 12 chr15 48550596 48550758 -37144996 - L2 LINE L2 -1 3312 3134 443 277 29 0 chr15 48550881 48551045 -37144709 + MIR SINE MIR 28 145 -63 442 286 111 14 chr15 48551280 48551489 -37144265 - MIR SINE MIR 0 262 35 196 206 63 0 chr15 48552016 48552079 -37143675 + MIR SINE MIR 65 131 -77 186 267 50 17 chr15 48552591 48552651 -37143103 - L2 LINE L2 -6 3307 3246 274 243 27 0 chr15 48552709 48552783 -37142971 - MIR3 SINE MIR -27 181 106 2404 109 0 0 chr15 48552920 48553231 -37142523 - AluSx SINE Alu -1 311 1 183 156 0 0 chr15 48553320 48553352 -37142402 + (CATG)n Simple_repeat Simple_repeat 4 35 0 216 0 0 0 chr15 48553855 48553879 -37141875 + (GA)n Simple_repeat Simple_repeat 1 24 0 439 294 14 44 chr15 48554628 48554788 -37140966 + MIR3 SINE MIR 13 171 -37 234 275 28 46 chr15 48554788 48554897 -37140857 - MER5A DNA MER1_type 0 189 83 318 150 12 25 chr15 48554958 48555038 -37140716 + CT-rich Low_complexity Low_complexity 2 80 0 508 321 93 32 chr15 48555240 48555747 -37140007 - L1MC4a LINE L1 -1886 5922 5385 184 363 22 22 chr15 48556275 48556366 -37139388 + MIR SINE MIR 118 208 -54 488 271 162 35 chr15 48556513 48556742 -37139012 + MIR SINE MIR 5 262 0 402 259 158 0 chr15 48557169 48557308 -37138446 + MIR SINE MIR 90 250 -12 1001 156 6 5 chr15 48557392 48557699 -37138055 - MLT1A1 LTR MaLR 0 365 1 742 130 46 8 chr15 48557978 48558628 -37137126 + GA-rich Low_complexity Low_complexity 1 674 0 546 186 0 41 chr15 48558808 48558980 -37136774 + G-rich Low_complexity Low_complexity 5 169 0 193 239 159 11 chr15 48559002 48559090 -37136664 + MIR SINE MIR 38 138 -70 703 306 83 10 chr15 48559220 48559436 -37136318 + L2 LINE L2 2862 3108 -205 260 108 0 0 chr15 48559436 48559473 -37136281 + (CA)n Simple_repeat Simple_repeat 1 37 0 703 306 83 10 chr15 48559473 48559557 -37136197 + L2 LINE L2 3108 3184 -129 2067 247 79 2 chr15 48559590 48560096 -37135658 - MLT1H1 LTR MaLR -8 547 3 394 218 119 10 chr15 48560102 48560203 -37135551 + L2 LINE L2 3202 3313 0 454 262 81 0 chr15 48560441 48560590 -37135164 - MIR SINE MIR -25 237 77 232 310 58 0 chr15 48561840 48561927 -37133827 + MIR SINE MIR 128 219 -43 409 298 38 23 chr15 48561990 48562188 -37133566 + MIR SINE MIR 47 247 -15 218 369 131 16 chr15 48562249 48562555 -37133199 + L3 LINE CR1 1211 1551 -26 180 172 17 103 chr15 48563419 48563477 -37132277 - MIR SINE MIR -62 146 94 558 190 7 51 chr15 48563505 48563642 -37132112 - MER96B DNA MER1_type? -1 416 286 352 239 30 45 chr15 48563648 48563782 -37131972 + MER96B DNA MER1_type? 284 415 -2 188 247 25 74 chr15 48564323 48564404 -37131350 - MIR SINE MIR -78 184 108 299 256 223 8 chr15 48565149 48565270 -37130484 - MIR SINE MIR -10 252 106 2145 118 0 35 chr15 48565781 48566095 -37129659 - AluSg SINE Alu -7 303 1 180 246 82 0 chr15 48566112 48566173 -37129581 - L2 LINE L2 -47 3225 3160 515 151 43 36 chr15 48566355 48566494 -37129260 + L1MA4A LINE L1 5968 6107 -196 368 239 13 0 chr15 48566492 48566593 -37129161 + L1MA4A LINE L1 6044 6276 -12 * 575 325 42 0 chr15 48567002 48567193 -37128561 + MIR SINE MIR 47 245 -17 2181 171 0 20 chr15 48568235 48568633 -37127121 + MLT1B LTR MaLR 1 467 0 480 174 0 0 chr15 48569342 48569434 -37126320 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 599 260 86 97 chr15 48569434 48569865 -37125889 - L2 LINE L2 0 3272 2847 400 286 73 0 chr15 48570908 48571086 -37124668 - L1ME4a LINE L1 -237 5884 5694 23 0 0 0 chr15 48571879 48571902 -37123852 + AT_rich Low_complexity Low_complexity 1 23 0 1448 162 132 33 chr15 48572134 48572467 -37123287 + MER47A DNA MER2_type 1 366 0 678 284 78 0 chr15 48572745 48572988 -37122766 + MIR SINE MIR 1 262 0 375 336 31 0 chr15 48573470 48573598 -37122156 + MIR SINE MIR 81 212 -50 426 286 29 0 chr15 48573601 48573706 -37122048 - L2 LINE L2 -3 3310 3203 1189 253 54 57 chr15 48573732 48574060 -37121694 - MLT1L LTR MaLR -6 609 298 725 173 0 7 chr15 48574060 48574199 -37121555 - L1MB5 LINE L1 -9 6165 6028 1189 253 54 57 chr15 48574199 48574361 -37121393 - MLT1L LTR MaLR -317 298 137 288 311 85 0 chr15 48575196 48575302 -37120452 - L2 LINE L2 0 3313 3199 1675 196 6 21 chr15 48575675 48576012 -37119742 - MER58B DNA MER1_type -1 340 9 400 291 14 81 chr15 48576072 48576295 -37119459 - L1ME4a LINE L1 -896 5250 5043 207 297 40 0 chr15 48577307 48577381 -37118373 + MIR SINE MIR 59 135 -73 389 279 19 32 chr15 48578321 48578475 -37117279 + MIR SINE MIR 41 192 -70 198 243 29 43 chr15 48579177 48579247 -37116507 + MIR SINE MIR 164 232 -30 256 258 67 0 chr15 48580330 48580419 -37115335 + L2 LINE L2 2448 2542 -772 1333 229 61 39 chr15 48580420 48581030 -37114724 - MER69 DNA AcHobo -42 2484 548 267 333 75 0 chr15 48581298 48581418 -37114336 - L2 LINE L2 -1 3271 3143 360 143 91 26 chr15 48582238 48582496 -37113258 + AluSc SINE Alu 218 299 0 1057 104 0 22 chr15 48582296 48582679 -37113075 + (GAAA)n Simple_repeat Simple_repeat 2 380 0 288 79 0 0 chr15 48582680 48582718 -37113036 + MER53 DNA DNA 152 189 0 303 254 0 0 chr15 48582737 48582808 -37112946 + L2 LINE L2 2988 3058 -214 1005 234 107 52 chr15 48583133 48583243 -37112511 + MLT1J LTR MaLR 1 104 -407 1944 143 20 7 chr15 48583243 48583544 -37112210 + AluSx SINE Alu 1 305 -7 1005 234 107 52 chr15 48583544 48583818 -37111936 + MLT1J LTR MaLR 104 406 -105 1890 236 31 29 chr15 48583819 48584337 -37111417 - LTR40a LTR ERVL 0 519 1 1871 118 43 25 chr15 48585219 48585526 -37110228 - AluSx SINE Alu 0 312 1 589 283 170 26 chr15 48585536 48586035 -37109719 - L1ME4a LINE L1 0 6121 5551 461 275 19 6 chr15 48586195 48586355 -37109399 - L1ME LINE L1 -301 5820 5659 1528 150 35 26 chr15 48586376 48586689 -37109065 - Tigger1 DNA MER2_type 0 2418 2103 261 238 172 13 chr15 48587129 48587254 -37108500 + MIR SINE MIR 115 262 0 2339 89 10 0 chr15 48587319 48587611 -37108143 - AluSc SINE Alu -14 295 1 562 159 0 0 chr15 48587743 48587831 -37107923 + FLAM SINE Alu 44 131 -12 427 341 15 30 chr15 48588113 48588450 -37107304 - HAL1b LINE L1 -621 727 396 967 196 90 78 chr15 48588749 48589292 -37106462 - L1MD2 LINE L1 -4 6162 5838 2118 129 3 0 chr15 48589292 48589579 -37106175 + AluSx SINE Alu 1 288 -24 967 196 90 78 chr15 48589579 48589634 -37106120 - L1MD2 LINE L1 -328 5838 5785 225 278 143 40 chr15 48589783 48589909 -37105845 + L2 LINE L2 3175 3313 0 183 129 0 0 chr15 48590352 48590383 -37105371 + (TG)n Simple_repeat Simple_repeat 1 31 0 413 293 0 18 chr15 48590405 48590572 -37105182 + (TG)n Simple_repeat Simple_repeat 1 164 0 264 59 0 0 chr15 48590593 48590627 -37105127 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 234 232 0 18 chr15 48591404 48591460 -37104294 + MIR3 SINE MIR 103 157 -51 579 225 155 11 chr15 48591862 48592049 -37103705 + MIR SINE MIR 47 260 -2 272 304 105 41 chr15 48592255 48592426 -37103328 + MIR SINE MIR 20 201 -61 637 247 8 77 chr15 48592430 48592665 -37103089 - MIR SINE MIR 0 262 44 196 313 0 38 chr15 48592690 48592770 -37102984 - L3 LINE CR1 -1 1576 1500 270 299 0 0 chr15 48592908 48592985 -37102769 - MIR SINE MIR -72 136 60 1058 280 94 39 chr15 48593345 48593813 -37101941 + MLT1L LTR MaLR 120 613 -2 1887 118 0 96 chr15 48593831 48594188 -37101566 + AluSx SINE Alu 3 329 0 1177 120 16 16 chr15 48594296 48594488 -37101266 + MER66B LTR ERV1 295 486 0 389 311 36 72 chr15 48594724 48595030 -37100724 - HAL1 LINE L1 -2173 334 40 591 248 170 57 chr15 48595436 48595754 -37100000 - MLT1H LTR MaLR -195 354 1 426 167 7 28 chr15 48598280 48598424 -37097330 + CT-rich Low_complexity Low_complexity 1 141 0 406 296 79 37 chr15 48598882 48599098 -37096656 + MIR SINE MIR 28 252 -10 268 286 0 0 chr15 48599512 48599582 -37096172 - MIR SINE MIR -106 102 33 276 294 59 0 chr15 48599626 48599728 -37096026 - MER5A DNA MER1_type -78 111 4 713 181 113 0 chr15 48599978 48600138 -37095616 - MER5B DNA MER1_type 0 178 1 202 234 19 0 chr15 48600219 48600326 -37095428 + (TG)n Simple_repeat Simple_repeat 2 110 0 2120 131 0 16 chr15 48600605 48600910 -37094844 - AluSx SINE Alu -12 300 1 249 288 12 12 chr15 48601942 48602022 -37093732 + MIR SINE MIR 81 160 -102 333 0 0 0 chr15 48602104 48602141 -37093613 + (TG)n Simple_repeat Simple_repeat 2 38 0 1127 264 101 57 chr15 48602245 48602352 -37093402 + HAL1 LINE L1 1840 1941 -566 231 114 0 0 chr15 48602352 48602387 -37093367 + (TA)n Simple_repeat Simple_repeat 1 35 0 2392 82 0 0 chr15 48602387 48602679 -37093075 - AluY SINE Alu -19 292 1 1127 264 101 57 chr15 48602679 48603032 -37092722 + HAL1 LINE L1 1941 2339 -168 348 44 0 0 chr15 48603032 48603077 -37092677 + L1PA8 LINE L1 6120 6164 -8 1127 264 101 57 chr15 48603077 48603247 -37092507 + HAL1 LINE L1 2339 2500 -7 347 0 23 0 chr15 48603252 48603295 -37092459 + (TA)n Simple_repeat Simple_repeat 1 44 0 220 250 188 0 chr15 48603730 48603810 -37091944 + L3 LINE CR1 1374 1468 -109 366 274 10 10 chr15 48604304 48604406 -37091348 - MIR3 SINE MIR -33 175 74 256 305 153 55 chr15 48604428 48604664 -37091090 - MIR SINE MIR -1 261 3 239 79 26 0 chr15 48604984 48605022 -37090732 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 214 336 70 66 chr15 48605500 48605741 -37090013 - L2 LINE L2 0 3272 3031 829 152 255 0 chr15 48606538 48606742 -37089012 - ORSL DNA AcHobo 0 275 20 202 189 0 0 chr15 48606838 48606875 -37088879 + MIR SINE MIR 108 144 -118 192 208 0 0 chr15 48607459 48607507 -37088247 + L2 LINE L2 2925 2972 -300 308 313 27 41 chr15 48608075 48608222 -37087532 - MIR SINE MIR -84 178 34 447 361 19 0 chr15 48608499 48608657 -37087097 + MIR SINE MIR 32 192 -70 1026 225 151 7 chr15 48608663 48608948 -37086806 - MER46C DNA MER2_type 0 338 13 823 245 43 10 chr15 48608975 48609183 -37086571 - MIR SINE MIR -28 234 20 261 0 0 0 chr15 48609365 48609394 -37086360 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 398 0 20 chr15 48609666 48609764 -37085990 + MIR SINE MIR 23 118 -90 605 309 69 18 chr15 48610291 48610508 -37085246 + MIR SINE MIR 14 241 -21 205 243 149 29 chr15 48610470 48610608 -37085146 - L2 LINE L2 -12 3260 3142 * 474 360 32 5 chr15 48610781 48610967 -37084787 - MIR SINE MIR -58 204 14 632 313 51 5 chr15 48611381 48611598 -37084156 + MIR SINE MIR 24 250 -12 827 252 111 13 chr15 48612450 48612676 -37083078 + MIR SINE MIR 14 261 -1 289 151 0 38 chr15 48612811 48612864 -37082890 + L2 LINE L2 3205 3255 -17 643 109 0 22 chr15 48612991 48613083 -37082671 - AluJ/FLAM SINE Alu -212 100 11 254 278 65 19 chr15 48613853 48613961 -37081793 - MIR SINE MIR -66 142 30 190 260 0 40 chr15 48614549 48614599 -37081155 + L2 LINE L2 3180 3227 -86 424 44 162 0 chr15 48614931 48614999 -37080755 - MADE1 DNA Mariner -1 79 1 357 200 12 12 chr15 48615054 48615134 -37080620 - MER116 DNA Mariner 0 80 1 803 148 0 0 chr15 48615157 48615279 -37080475 - FLAM_A SINE Alu -1 141 20 209 271 0 43 chr15 48615451 48615521 -37080233 - MER5B DNA MER1_type -108 70 4 331 290 7 69 chr15 48616274 48616419 -37079335 - MIR SINE MIR -43 219 84 270 0 0 0 chr15 48616879 48616909 -37078845 + (CA)n Simple_repeat Simple_repeat 2 31 0 323 301 91 21 chr15 48616969 48617112 -37078642 + MIR SINE MIR 79 231 -31 497 269 90 21 chr15 48617644 48617789 -37077965 - MIR SINE MIR -31 231 77 188 35 35 0 chr15 48618613 48618642 -37077112 + (CA)n Simple_repeat Simple_repeat 1 30 0 229 279 96 10 chr15 48618975 48619079 -37076675 + MIR3 SINE MIR 81 193 -15 682 288 8 83 chr15 48619158 48619422 -37076332 + MIR SINE MIR 4 247 -15 476 262 81 17 chr15 48620725 48620904 -37074850 - MIR3 SINE MIR -28 180 20 358 280 140 52 chr15 48622772 48623058 -37072696 - MLT1H LTR MaLR -8 541 231 619 306 41 5 chr15 48623675 48623871 -37071883 - MIR SINE MIR -51 211 9 254 327 43 12 chr15 48623890 48624027 -37071727 + MIR SINE MIR 23 161 -64 415 259 87 92 chr15 48624088 48624663 -37071091 + L1MC4a LINE L1 5549 6120 -1 613 224 163 0 chr15 48625985 48626132 -37069622 + MER5A DNA MER1_type 13 183 -6 220 268 102 51 chr15 48626418 48626575 -37069179 - MIR3 SINE MIR -41 167 3 195 42 0 0 chr15 48626961 48626985 -37068769 + (CA)n Simple_repeat Simple_repeat 1 24 0 346 111 3 30 chr15 48627272 48627339 -37068415 + AluJo SINE Alu 74 134 -168 320 159 134 89 chr15 48627356 48627513 -37068241 + L2 LINE L2 2901 3064 -208 235 179 137 51 chr15 48628321 48628438 -37067316 + MLT1K LTR MaLR 171 297 -291 285 146 0 0 chr15 48629337 48629385 -37066369 + (T)n Simple_repeat Simple_repeat 1 48 0 523 284 54 43 chr15 48629499 48629732 -37066022 - MIR SINE MIR -15 247 12 2051 140 171 20 chr15 48629970 48630363 -37065391 - LTR47A LTR ERVL 0 452 1 583 241 21 30 chr15 48630411 48630711 -37065043 - MLT1H LTR MaLR -19 530 86 761 217 55 46 chr15 48630834 48631051 -37064703 - MER20 DNA MER1_type 0 219 1 1122 269 65 7 chr15 48631601 48632120 -37063634 + L2 LINE L2 2499 3045 -268 1091 202 137 59 chr15 48632123 48632460 -37063294 - MLT1A2 LTR MaLR -1 373 11 716 278 59 20 chr15 48632475 48632730 -37063024 + L2 LINE L2 3049 3313 0 231 255 0 0 chr15 48632899 48632946 -37062808 + C-rich Low_complexity Low_complexity 5 51 0 1828 184 0 3 chr15 48633530 48633834 -37061920 + AluJo SINE Alu 1 303 -9 348 192 29 10 chr15 48633892 48633996 -37061758 + GA-rich Low_complexity Low_complexity 4 109 0 249 284 43 34 chr15 48634518 48634705 -37061049 - MIR SINE MIR -43 219 30 478 335 37 12 chr15 48634757 48634921 -37060833 - MER5A DNA MER1_type -21 168 1 288 241 51 13 chr15 48635546 48635625 -37060129 + LTR67 LTR ERVL 119 200 -357 1811 189 15 0 chr15 48635707 48636040 -37059714 + MSTD LTR MaLR 57 394 -2 1889 105 8 0 chr15 48636040 48636319 -37059435 + AluSx SINE Alu 35 315 0 230 299 31 0 chr15 48636394 48636491 -37059263 + LTR67 LTR ERVL 439 538 -19 370 323 10 0 chr15 48636526 48636622 -37059132 + L2 LINE L2 3162 3258 -14 276 111 0 0 chr15 48638620 48638665 -37057089 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 158 0 0 chr15 48638818 48638856 -37056898 + MIR SINE MIR 101 138 -124 476 287 117 22 chr15 48639289 48639512 -37056242 - MER115 DNA AcHobo -350 343 100 180 97 0 0 chr15 48639989 48640020 -37055734 + (T)n Simple_repeat Simple_repeat 1 31 0 796 184 11 60 chr15 48641592 48641777 -37053977 + FRAM SINE Alu 1 171 -5 2399 112 0 0 chr15 48641971 48642283 -37053471 - AluSq SINE Alu -1 312 1 333 290 87 17 chr15 48642380 48642604 -37053150 + MIR SINE MIR 20 256 -6 189 0 0 0 chr15 48642790 48642811 -37052943 + (T)n Simple_repeat Simple_repeat 1 21 0 229 279 126 0 chr15 48642991 48643102 -37052652 + L2 LINE L2 2910 3034 -238 184 333 140 35 chr15 48643288 48643402 -37052352 + MIR SINE MIR 21 146 -116 356 235 33 3 chr15 48643515 48643629 -37052125 - MIR SINE MIR -62 146 35 187 196 176 0 chr15 48643947 48643998 -37051756 - MIR SINE MIR -60 148 89 372 293 102 70 chr15 48644127 48644235 -37051519 - L2 LINE L2 -182 3090 2987 1040 207 4 48 chr15 48644235 48644462 -37051292 - MER20 DNA MER1_type -1 218 2 372 293 102 70 chr15 48644462 48644568 -37051186 - L2 LINE L2 -285 2987 2869 319 355 18 0 chr15 48646568 48646678 -37049076 - L3 LINE CR1 -40 1537 1426 514 263 19 38 chr15 48647088 48647121 -37048633 + MER63A DNA MER1_type 54 86 -1602 2120 108 94 29 chr15 48647121 48647463 -37048291 - THE1B LTR MaLR 0 364 1 514 263 19 38 chr15 48647463 48647589 -37048165 + MER63A DNA MER1_type 86 210 0 830 169 32 0 chr15 48648640 48648794 -37046960 + MER5A DNA MER1_type 1 159 -30 210 150 0 0 chr15 48648795 48648835 -37046919 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1742 171 3 24 chr15 48648836 48649128 -37046626 - AluJb SINE Alu -26 286 1 259 204 0 0 chr15 48649128 48649172 -37046582 + MER5A DNA MER1_type 146 189 0 384 350 91 21 chr15 48649939 48650188 -37045566 - L2 LINE L2 -578 2736 2455 2534 104 13 43 chr15 48650188 48650563 -37045191 + THE1B LTR MaLR 1 364 0 384 350 91 21 chr15 48650563 48650653 -37045101 - L2 LINE L2 -859 2455 2373 579 235 6 42 chr15 48651035 48651201 -37044553 - MLT1J LTR MaLR -123 388 229 26 0 0 0 chr15 48651412 48651438 -37044316 + AT_rich Low_complexity Low_complexity 1 26 0 249 146 36 0 chr15 48651496 48651551 -37044203 - LTR67 LTR ERVL -17 540 484 182 93 0 47 chr15 48651775 48651818 -37043936 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1016 203 81 92 chr15 48651936 48652305 -37043449 - MLT1A1 LTR MaLR 0 365 1 180 0 0 0 chr15 48653186 48653206 -37042548 + (A)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr15 48653225 48653251 -37042503 + AT_rich Low_complexity Low_complexity 1 26 0 1737 177 37 0 chr15 48653724 48654024 -37041730 + AluJo SINE Alu 1 311 -1 198 279 29 15 chr15 48654604 48654672 -37041082 - MIR SINE MIR -51 211 143 239 327 187 0 chr15 48655660 48655810 -37039944 + MIR SINE MIR 58 235 -27 273 342 0 0 chr15 48655875 48655951 -37039803 - MER5B DNA MER1_type -100 78 3 30 59 0 0 chr15 48656147 48656198 -37039556 + AT_rich Low_complexity Low_complexity 1 51 0 572 317 44 106 chr15 48656383 48656923 -37038831 - L3 LINE CR1 -883 694 188 188 294 49 49 chr15 48657184 48657286 -37038468 + MIR SINE MIR 9 110 -152 1939 126 4 0 chr15 48657316 48657570 -37038184 - AluSc SINE Alu -54 255 1 396 271 73 40 chr15 48657948 48658099 -37037655 - MIR3 SINE MIR -52 156 1 359 220 80 0 chr15 48658232 48658348 -37037406 + MIR3 SINE MIR 70 200 -8 355 259 148 0 chr15 48659987 48660095 -37035659 - MER5C DNA MER1_type -200 124 1 257 206 14 27 chr15 48660275 48660348 -37035406 - L1MC5 LINE L1 -45 7916 7845 201 275 12 62 chr15 48660830 48660910 -37034844 - L2 LINE L2 -49 3223 3148 204 182 0 0 chr15 48661060 48661104 -37034650 + GA-rich Low_complexity Low_complexity 1 44 0 370 272 87 0 chr15 48661519 48661622 -37034132 + MER5A DNA MER1_type 1 112 -77 460 304 16 47 chr15 48662056 48662247 -37033507 - MIR SINE MIR -58 204 20 5013 63 2 0 chr15 48662459 48663077 -37032677 - L1PA7 LINE L1 -2 6152 5534 207 100 0 0 chr15 48663368 48663398 -37032356 + (T)n Simple_repeat Simple_repeat 1 30 0 433 149 141 25 chr15 48663716 48663837 -37031917 - MER103 DNA DNA -20 146 12 724 173 69 78 chr15 48665806 48666119 -37029635 - MLT1A1 LTR MaLR -2 426 89 295 250 83 37 chr15 48666940 48667048 -37028706 + MIR SINE MIR 24 136 -72 604 258 60 40 chr15 48667419 48667618 -37028136 - MIR SINE MIR -57 205 1 417 224 151 46 chr15 48668945 48669097 -37026657 + MIR SINE MIR 84 251 -11 278 308 38 68 chr15 48669542 48669675 -37026079 - MIR SINE MIR -64 144 16 217 279 13 38 chr15 48669994 48670073 -37025681 - L2 LINE L2 -5 3308 3232 224 336 114 9 chr15 48670143 48670326 -37025428 + MIR SINE MIR 18 207 -18 211 323 50 45 chr15 48670400 48670598 -37025156 - L2 LINE L2 -204 3068 2870 198 0 0 0 chr15 48670666 48670688 -37025066 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4924 254 72 24 chr15 48670690 48672124 -37023630 + MSTD-int LTR MaLR 232 1735 0 1724 233 31 5 chr15 48672124 48672510 -37023244 + MSTD LTR MaLR 1 396 0 290 259 12 12 chr15 48672727 48672812 -37022942 + MLT1K LTR MaLR 10 94 -494 204 295 16 16 chr15 48677060 48677121 -37018633 - MER5A DNA MER1_type -83 106 46 197 296 68 11 chr15 48677063 48677151 -37018603 + MER5A DNA MER1_type 97 189 0 * 2771 245 75 24 chr15 48677856 48678924 -37016830 + L2 LINE L2 2190 3313 0 434 285 47 41 chr15 48679174 48679347 -37016407 - MIR SINE MIR -54 154 6 219 109 36 146 chr15 48680450 48680505 -37015249 - L2 LINE L2 -2 3311 3263 220 265 82 0 chr15 48680516 48680614 -37015140 - MIR SINE MIR 0 262 157 201 121 0 0 chr15 48681084 48681117 -37014637 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr15 48681117 48681146 -37014608 + AT_rich Low_complexity Low_complexity 1 29 0 1047 183 0 38 chr15 48681252 48681465 -37014289 - MER3 DNA MER1_type 0 209 5 1376 130 5 5 chr15 48681482 48681682 -37014072 - AluSc SINE Alu -4 305 106 2130 137 16 0 chr15 48682194 48682501 -37013253 - AluSx SINE Alu 0 312 1 313 319 44 35 chr15 48682518 48682631 -37013123 - L2 LINE L2 -38 3234 3121 390 262 106 7 chr15 48682641 48682782 -37012972 - MIR SINE MIR 0 262 108 191 224 61 0 chr15 48684286 48684335 -37011419 + MIR SINE MIR 85 136 -72 288 53 0 0 chr15 48684460 48684498 -37011256 + (CA)n Simple_repeat Simple_repeat 1 38 0 233 295 26 26 chr15 48684778 48684856 -37010898 - MIR SINE MIR -68 140 63 312 120 0 0 chr15 48684930 48684980 -37010774 + (CA)n Simple_repeat Simple_repeat 2 51 0 553 225 150 12 chr15 48685101 48685274 -37010480 + MIR SINE MIR 31 227 -35 708 228 54 11 chr15 48685386 48685570 -37010184 - MIR SINE MIR -40 222 31 490 290 55 29 chr15 48686134 48686368 -37009386 + MIR SINE MIR 1 244 -18 28 0 0 0 chr15 48686599 48686627 -37009127 + AT_rich Low_complexity Low_complexity 1 28 0 1111 77 0 35 chr15 48687678 48687853 -37007901 - AluSq SINE Alu 0 317 148 2275 112 3 0 chr15 48687897 48688191 -37007563 + AluSq SINE Alu 1 295 -18 584 232 134 24 chr15 48688702 48688866 -37006888 - MIR SINE MIR -16 246 65 280 269 54 32 chr15 48688861 48688954 -37006800 + L2 LINE L2 3173 3267 -5 * 1791 188 24 0 chr15 48689481 48689816 -37005938 + L1MB7 LINE L1 5837 6179 -5 2456 90 7 0 chr15 48689824 48690134 -37005620 - AluSq SINE Alu -1 312 1 448 312 29 0 chr15 48690799 48690972 -37004782 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 747 293 104 34 chr15 48691124 48691568 -37004186 + L2 LINE L2 2454 2927 -345 1562 116 43 43 chr15 48691570 48691986 -37003768 - MER51A LTR ERV1 0 634 1 208 279 15 0 chr15 48691992 48692060 -37003694 + L2 LINE L2 2933 3001 -312 273 286 234 54 chr15 48692186 48692557 -37003197 - MLT1K LTR MaLR 0 588 151 444 232 65 80 chr15 48694375 48694513 -37001241 - MIR SINE MIR -39 169 34 250 330 19 9 chr15 48695416 48695522 -37000232 + MIR SINE MIR 102 208 -54 201 74 0 0 chr15 48696583 48696610 -36999144 + (TG)n Simple_repeat Simple_repeat 2 28 0 282 313 14 41 chr15 48696942 48697170 -36998584 + CT-rich Low_complexity Low_complexity 1 221 0 374 221 84 46 chr15 48697810 48697941 -36997813 - MLT1L LTR MaLR -369 246 111 1815 116 0 8 chr15 48698142 48698393 -36997361 + AluSx SINE Alu 59 307 -5 180 77 0 0 chr15 48698560 48698586 -36997168 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 570 134 62 0 chr15 48698720 48698832 -36996922 - L1MB7 LINE L1 0 6184 6066 230 130 74 19 chr15 48699753 48699807 -36995947 - MER103 DNA DNA -1 165 109 283 244 76 61 chr15 48700302 48700433 -36995321 - MIR3 SINE MIR -66 142 10 415 316 0 23 chr15 48701119 48701252 -36994502 + MIR SINE MIR 65 194 -68 201 274 311 0 chr15 48701512 48701618 -36994136 + L2 LINE L2 3127 3265 -7 288 53 0 0 chr15 48701708 48701746 -36994008 + (CA)n Simple_repeat Simple_repeat 1 38 0 470 270 6 71 chr15 48701915 48702102 -36993652 + MIR3 SINE MIR 4 182 -51 276 279 63 0 chr15 48702270 48702349 -36993405 - MIR3 SINE MIR -40 168 85 480 269 166 27 chr15 48703617 48703955 -36991799 + MLT1K LTR MaLR 186 570 -18 265 240 213 13 chr15 48704093 48704168 -36991586 + L2 LINE L2 3188 3277 -36 182 324 44 0 chr15 48705314 48705382 -36990372 - MIR3 SINE MIR -30 178 108 372 256 87 77 chr15 48705994 48706189 -36989565 - MLT1K LTR MaLR 0 588 392 268 268 42 18 chr15 48706194 48706362 -36989392 - L1MEd LINE L1 -3855 2360 2189 367 242 79 87 chr15 48706370 48706622 -36989132 - L1MEd LINE L1 -4175 2221 1972 2315 272 66 56 chr15 48706955 48708402 -36987352 - L1MEd LINE L1 -938 1638 90 357 284 0 11 chr15 48708402 48708490 -36987264 - MLT1K LTR MaLR -180 408 322 208 254 92 34 chr15 48708741 48708851 -36986903 - MIR SINE MIR -63 199 37 313 303 57 49 chr15 48709072 48709163 -36986591 + MER117 DNA MER1_type 13 107 -90 1732 199 68 60 chr15 48709163 48709616 -36986138 - LTR16A1 LTR ERVL 0 457 1 313 303 57 49 chr15 48709616 48709646 -36986108 + MER117 DNA MER1_type 107 135 -62 431 213 21 0 chr15 48709672 48709766 -36985988 - MIR SINE MIR -49 213 118 486 301 22 52 chr15 48710004 48710233 -36985521 + L3 LINE CR1 1050 1271 -306 591 214 34 0 chr15 48710334 48710451 -36985303 + MER63A DNA MER1_type 2 122 0 2262 137 19 25 chr15 48710455 48710821 -36984933 - THE1B LTR MaLR 0 364 1 12382 91 1 1 chr15 48710822 48712401 -36983353 - THE1B-int LTR MaLR -1 1579 1 388 276 10 10 chr15 48712388 48712401 -36983353 + MER63A DNA MER1_type 109 121 -1567 2245 115 25 30 chr15 48712401 48712767 -36982987 - THE1B LTR MaLR 0 364 1 388 276 10 10 chr15 48712767 48712851 -36982903 + MER63A DNA MER1_type 120 206 -4 368 217 12 0 chr15 48713000 48713083 -36982671 - MER103 DNA DNA -71 95 12 470 299 19 25 chr15 48713178 48713335 -36982419 + L3 LINE CR1 1247 1402 -175 272 312 161 20 chr15 48714265 48714426 -36981328 - MIR SINE MIR -37 171 30 26 0 0 0 chr15 48714431 48714457 -36981297 + AT_rich Low_complexity Low_complexity 1 26 0 360 267 53 96 chr15 48714460 48714763 -36980991 - HAL1 LINE L1 -6 2501 2212 815 243 102 21 chr15 48714834 48715168 -36980586 - HAL1 LINE L1 -1407 1100 740 1011 278 49 21 chr15 48715210 48715537 -36980217 - LTR16A LTR ERVL -99 351 16 387 255 57 32 chr15 48715855 48716012 -36979742 - HERV16 LTR ERVL -301 4695 4535 324 267 53 0 chr15 48716270 48716345 -36979409 - HERV16 LTR ERVL -1907 3857 3779 1608 288 109 14 chr15 48716374 48716943 -36978811 - HERV16 LTR ERVL -2026 2970 2348 7171 236 43 18 chr15 48716943 48721103 -36974651 + L1M3c LINE L1 11 3972 -2238 2268 90 0 3 chr15 48721446 48721746 -36974008 + AluSq SINE Alu 1 299 -14 519 274 24 0 chr15 48721813 48721937 -36973817 - L2 LINE L2 0 3313 3187 22 0 0 0 chr15 48724568 48724590 -36971164 + AT_rich Low_complexity Low_complexity 1 22 0 488 279 50 89 chr15 48724827 48725107 -36970647 + L2 LINE L2 3003 3271 -1 21 0 0 0 chr15 48725670 48725691 -36970063 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr15 48725718 48725759 -36969995 + (TG)n Simple_repeat Simple_repeat 2 42 0 430 223 193 54 chr15 48727244 48727410 -36968344 - MIR SINE MIR -63 199 11 182 238 16 79 chr15 48727785 48727848 -36967906 + L2 LINE L2 3137 3195 -77 182 239 22 22 chr15 48727875 48727921 -36967833 - L2 LINE L2 -12 3260 3215 1976 64 0 4 chr15 48727974 48728246 -36967508 + L1PA5 LINE L1 5891 6154 0 215 233 0 0 chr15 48729054 48729097 -36966657 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 510 332 77 21 chr15 48729210 48729586 -36966168 - L2 LINE L2 -1197 2117 1721 522 204 39 0 chr15 48730311 48730414 -36965340 - MIR SINE MIR -62 146 40 306 314 50 7 chr15 48730716 48730856 -36964898 + L2 LINE L2 3168 3313 0 438 332 105 66 chr15 48731022 48731496 -36964258 - L3 LINE CR1 -507 1070 569 1213 184 196 16 chr15 48731496 48731746 -36964008 - AluJb SINE Alu -7 295 1 438 332 105 66 chr15 48731746 48731832 -36963922 - L3 LINE CR1 -1008 569 488 377 293 27 43 chr15 48732356 48732544 -36963210 - Charlie8 DNA MER1_type -2159 258 74 496 318 86 21 chr15 48732603 48733068 -36962686 + L1MC4a LINE L1 4489 4983 -1163 29 84 0 0 chr15 48733100 48733171 -36962583 + AT_rich Low_complexity Low_complexity 1 71 0 242 127 44 61 chr15 48733179 48733360 -36962394 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 216 184 11 58 chr15 48733367 48733454 -36962300 + (TATAA)n Simple_repeat Simple_repeat 2 84 0 645 210 6 83 chr15 48733456 48733637 -36962117 + L2 LINE L2 3147 3313 0 36 40 0 0 chr15 48733714 48733764 -36961990 + AT_rich Low_complexity Low_complexity 1 50 0 338 270 69 108 chr15 48733874 48734455 -36961299 + L1MA7 LINE L1 5294 5851 -440 * 1773 264 45 28 chr15 48733993 48734528 -36961226 + L1MC4a LINE L1 5383 5926 -1882 667 249 156 43 chr15 48734687 48735084 -36960670 - MLT1J1 LTR MaLR 0 446 5 480 279 18 31 chr15 48735201 48735427 -36960327 + L1MC4a LINE L1 4831 5053 -1093 485 314 55 31 chr15 48735506 48736206 -36959548 + L1MC4a LINE L1 5198 5397 -749 1050 256 4 4 chr15 48736475 48736705 -36959049 - MIR SINE MIR -10 252 23 200 319 72 0 chr15 48736959 48737028 -36958726 - MIR3 SINE MIR -23 185 112 217 75 50 0 chr15 48737360 48737400 -36958354 + CT-rich Low_complexity Low_complexity 2 43 0 210 289 10 41 chr15 48737655 48737752 -36958002 + CT-rich Low_complexity Low_complexity 5 98 0 183 162 0 0 chr15 48737754 48737791 -36957963 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 276 341 116 36 chr15 48738797 48738935 -36956819 + MIR3 SINE MIR 5 153 -55 222 288 110 7 chr15 48739469 48739588 -36956166 - MIR SINE MIR -114 148 16 647 225 57 81 chr15 48739643 48739852 -36955902 - MIR SINE MIR 0 262 59 240 35 0 0 chr15 48740317 48740346 -36955408 + (CA)n Simple_repeat Simple_repeat 1 29 0 418 66 148 0 chr15 48740545 48740606 -36955148 + AluS SINE Alu 2 71 -242 510 270 123 25 chr15 48740752 48740915 -36954839 + MER5A DNA MER1_type 5 183 -6 275 317 47 12 chr15 48740971 48741094 -36954660 + MIR SINE MIR 3 132 -76 343 282 23 30 chr15 48741104 48741235 -36954519 + L1MC4a LINE L1 5668 5797 -2011 656 278 88 39 chr15 48741304 48741692 -36954062 + MLT1J LTR MaLR 102 508 -3 347 329 5 72 chr15 48741696 48741918 -36953836 + L1MC4a LINE L1 5797 6003 -1805 1602 160 18 93 chr15 48742416 48742807 -36952947 + L1MB3 LINE L1 5827 6183 0 1969 135 3 0 chr15 48742825 48743122 -36952632 + AluSx SINE Alu 6 303 -9 5021 27 19 0 chr15 48743136 48743726 -36952028 + L1PA4 LINE L1 5550 6150 -5 13900 122 11 2 chr15 48743911 48745939 -36949815 + Tigger1 DNA MER2_type 37 2082 -336 1034 264 80 45 chr15 48746446 48747002 -36948752 - MLT1L LTR MaLR -12 603 4 211 174 250 0 chr15 48747059 48747151 -36948603 - MIR3 SINE MIR -79 129 15 312 217 0 58 chr15 48747432 48747621 -36948133 + CT-rich Low_complexity Low_complexity 2 179 0 285 280 40 30 chr15 48748696 48748796 -36946958 + L2 LINE L2 3149 3249 -23 421 254 109 22 chr15 48750637 48750775 -36944979 + MIR SINE MIR 15 164 -98 1074 159 56 10 chr15 48750782 48750977 -36944777 + MER3 DNA MER1_type 1 204 -5 306 313 22 45 chr15 48751219 48751353 -36944401 - MIR SINE MIR -127 135 5 873 241 44 0 chr15 48751492 48751695 -36944059 - MER20 DNA MER1_type 0 219 8 281 200 104 38 chr15 48751701 48751839 -36943915 + MIR SINE MIR 17 147 -61 254 176 0 108 chr15 48752346 48752420 -36943334 + G-rich Low_complexity Low_complexity 6 71 0 211 250 156 0 chr15 48752747 48752811 -36942943 - L3 LINE CR1 -120 1457 1384 606 273 8 0 chr15 48754700 48754832 -36940922 - MIR3 SINE MIR -34 174 42 183 80 0 0 chr15 48755852 48755877 -36939877 + (T)n Simple_repeat Simple_repeat 1 25 0 282 281 24 12 chr15 48756048 48756130 -36939624 + MIR SINE MIR 97 179 -83 287 318 56 81 chr15 48756712 48756910 -36938844 + L2 LINE L2 2994 3186 -86 2139 158 128 16 chr15 48756944 48757381 -36938373 - MER66B LTR ERV1 0 486 1 213 241 0 35 chr15 48758541 48758628 -36937126 + (CA)n Simple_repeat Simple_repeat 2 85 0 222 320 162 29 chr15 48759315 48759789 -36935965 - L2 LINE L2 0 3313 2778 314 211 14 14 chr15 48760113 48760184 -36935570 + MIR SINE MIR 77 147 -115 245 265 73 0 chr15 48761315 48761383 -36934371 - L2 LINE L2 -42 3230 3158 916 257 46 21 chr15 48761593 48761830 -36933924 - MIR SINE MIR -13 249 7 1023 259 0 37 chr15 48761947 48762115 -36933639 - MIR SINE MIR -1 261 105 2734 163 15 43 chr15 48762115 48762648 -36933106 - MLT2B1 LTR ERVL -2 518 1 1023 259 0 37 chr15 48762648 48762749 -36933005 - MIR SINE MIR -157 105 2 285 297 79 0 chr15 48763646 48763747 -36932007 + MIR SINE MIR 80 188 -74 364 244 104 49 chr15 48764250 48764414 -36931340 - MIR SINE MIR -42 220 48 217 228 123 0 chr15 48765527 48765584 -36930170 + L2 LINE L2 3167 3230 -42 455 148 148 0 chr15 48765607 48765708 -36930046 + MIR SINE MIR 77 192 -70 191 219 0 0 chr15 48766241 48766282 -36929472 + MIR SINE MIR 221 261 -1 21 82 0 0 chr15 48766297 48766346 -36929408 + AT_rich Low_complexity Low_complexity 1 49 0 314 317 35 14 chr15 48767147 48767289 -36928465 + MIR SINE MIR 48 192 -70 323 179 7 152 chr15 48767364 48767515 -36928239 + L1ME4a LINE L1 5961 6089 -32 203 186 167 73 chr15 48768167 48768266 -36927488 - MIR3 SINE MIR -47 161 51 280 286 125 80 chr15 48769030 48769366 -36926388 + L2 LINE L2 2921 3271 -1 236 329 0 13 chr15 48770006 48770082 -36925672 - L2 LINE L2 -47 3266 3192 * 299 180 49 0 chr15 48770080 48770141 -36925613 + MIR3 SINE MIR 97 160 -48 790 252 113 21 chr15 48770188 48770569 -36925185 - MER113 DNA MER1_type? -66 455 40 197 65 32 0 chr15 48770934 48770965 -36924789 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 251 340 111 72 chr15 48771108 48771414 -36924340 + L2 LINE L2 2955 3272 0 362 345 35 7 chr15 48771527 48771672 -36924082 - L2 LINE L2 -7 3306 3158 3813 223 77 48 chr15 48771739 48773122 -36922632 + L1MC5 LINE L1 6501 7917 -44 254 336 15 66 chr15 48773187 48773324 -36922430 - MIR3 SINE MIR -1 207 78 1772 305 66 48 chr15 48773702 48775527 -36920227 - L1ME3 LINE L1 -206 5956 4083 764 182 8 0 chr15 48775527 48775648 -36920106 - FLAM_A SINE Alu -11 122 1 1772 305 66 48 chr15 48775648 48775833 -36919921 - L1ME3 LINE L1 -2079 4083 3903 339 346 92 5 chr15 48775855 48776072 -36919682 - L1ME3 LINE L1 -3439 2707 2472 1290 112 0 0 chr15 48776663 48776925 -36918829 + (TCCA)n Simple_repeat Simple_repeat 1 262 0 464 246 117 12 chr15 48776952 48777123 -36918631 + MIR SINE MIR 73 261 -1 273 254 236 9 chr15 48777138 48777248 -36918506 - L2 LINE L2 0 3272 3138 562 139 30 0 chr15 48777283 48777365 -36918389 - Tigger5 DNA MER2_type 0 2323 2236 1939 106 0 4 chr15 48777365 48777639 -36918115 + AluSg SINE Alu 19 291 -19 562 139 30 0 chr15 48777639 48777657 -36918097 - Tigger5 DNA MER2_type -87 2236 2220 383 307 93 14 chr15 48777777 48777992 -36917762 - L2 LINE L2 -212 3060 2829 444 318 61 58 chr15 48778515 48778874 -36916880 + L2 LINE L2 2910 3269 -3 262 256 8 8 chr15 48778882 48778999 -36916755 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 289 194 45 0 chr15 48779255 48779322 -36916432 + MIR3 SINE MIR 98 167 -41 2232 110 7 0 chr15 48779696 48780006 -36915748 - AluSx SINE Alu 0 312 1 252 313 239 0 chr15 48780524 48780658 -36915096 - MER5A DNA MER1_type -1 188 23 210 192 0 0 chr15 48782623 48782675 -36913079 + A-rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr15 48782991 48783020 -36912734 + AT_rich Low_complexity Low_complexity 1 29 0 230 286 0 0 chr15 48783202 48783272 -36912482 + GA-rich Low_complexity Low_complexity 1 70 0 198 0 0 0 chr15 48783518 48783540 -36912214 + (A)n Simple_repeat Simple_repeat 1 22 0 208 325 0 0 chr15 48784809 48784886 -36910868 + (TG)n Simple_repeat Simple_repeat 1 77 0 256 328 79 35 chr15 48785851 48786080 -36909674 - MIR SINE MIR -9 253 15 34 42 0 0 chr15 48786769 48786817 -36908937 + AT_rich Low_complexity Low_complexity 1 48 0 375 310 52 26 chr15 48786836 48786991 -36908763 - MIR SINE MIR 0 262 104 184 268 0 0 chr15 48787068 48787109 -36908645 + L2 LINE L2 3025 3065 -207 268 301 146 0 chr15 48787461 48787564 -36908190 - MIR SINE MIR -72 136 19 323 273 151 0 chr15 48787968 48788107 -36907647 - MIR SINE MIR -97 165 6 304 301 15 2 chr15 48788882 48789002 -36906752 - MIR SINE MIR -71 137 29 1961 111 44 14 chr15 48790762 48791059 -36904695 - AluSx SINE Alu -6 306 1 318 329 97 13 chr15 48791816 48791971 -36903783 - MIR3 SINE MIR -21 187 20 298 290 10 30 chr15 48792428 48792528 -36903226 - MIR SINE MIR -75 187 90 187 247 65 26 chr15 48793052 48793129 -36902625 + MER5A DNA MER1_type 37 116 -73 253 321 42 98 chr15 48794770 48795035 -36900719 + L2 LINE L2 2992 3241 -31 291 316 44 9 chr15 48795711 48795825 -36899929 - L2 LINE L2 -5 3267 3150 285 286 51 18 chr15 48797161 48797296 -36898458 - MIR SINE MIR -63 145 3 305 287 23 0 chr15 48798083 48798170 -36897584 - MIR3 SINE MIR -28 180 92 21 0 0 0 chr15 48798909 48798930 -36896824 + AT_rich Low_complexity Low_complexity 1 21 0 592 253 38 13 chr15 48800831 48800989 -36894765 + MIR SINE MIR 20 181 -81 450 239 132 66 chr15 48802112 48802325 -36893429 - L1ME4a LINE L1 0 6121 5895 348 323 0 0 chr15 48802886 48802985 -36892769 + MIR SINE MIR 19 117 -145 254 208 198 40 chr15 48803102 48803203 -36892551 + L2 LINE L2 3155 3271 -1 208 273 256 0 chr15 48804614 48804735 -36891019 - MIR SINE MIR -63 199 48 260 224 0 0 chr15 48805637 48805686 -36890068 - MIR SINE MIR -72 136 88 182 275 0 0 chr15 48806658 48806698 -36889056 + MIR3 SINE MIR 121 160 -48 641 183 83 0 chr15 48806750 48806870 -36888884 + MER20 DNA MER1_type 90 219 0 394 287 127 0 chr15 48807213 48807358 -36888396 - MIR3 SINE MIR -24 184 22 285 317 26 16 chr15 48807512 48807647 -36888107 + MER5A DNA MER1_type 4 140 -38 220 225 25 62 chr15 48807666 48807746 -36888008 - MIR3 SINE MIR -48 160 84 390 342 21 0 chr15 48808910 48809103 -36886651 + L1MC4 LINE L1 7721 7917 -125 835 80 303 12 chr15 48809158 48809346 -36886408 + L1MC1 LINE L1 6117 6333 0 249 33 0 0 chr15 48809996 48810026 -36885728 + (CTGGGG)n Simple_repeat Simple_repeat 5 34 0 1752 172 16 0 chr15 48810721 48811024 -36884730 - AluJb SINE Alu -4 308 1 572 222 0 24 chr15 48811974 48812100 -36883654 - MER20 DNA MER1_type 0 219 97 208 246 0 0 chr15 48812365 48812422 -36883332 + A-rich Low_complexity Low_complexity 4 60 0 245 186 0 0 chr15 48812479 48812522 -36883232 + L2 LINE L2 3216 3258 -14 24 32 0 0 chr15 48813812 48813843 -36881911 + AT_rich Low_complexity Low_complexity 1 31 0 219 69 0 0 chr15 48814286 48814315 -36881439 + (CCCCCG)n Simple_repeat Simple_repeat 3 31 0 241 86 0 0 chr15 48814835 48814870 -36880884 - MIR3 SINE MIR -52 156 122 417 254 37 30 chr15 48816450 48816584 -36879170 + MIR3 SINE MIR 58 192 -16 273 192 261 38 chr15 48817846 48818007 -36877747 + MIR SINE MIR 7 192 -59 275 270 20 30 chr15 48819254 48819354 -36876400 + MIR SINE MIR 48 146 -116 201 147 0 0 chr15 48819545 48819579 -36876175 + (A)n Simple_repeat Simple_repeat 1 34 0 24 53 0 0 chr15 48819893 48819931 -36875823 + AT_rich Low_complexity Low_complexity 1 38 0 27 73 0 0 chr15 48820930 48820985 -36874769 + GC_rich Low_complexity Low_complexity 1 55 0 34 0 0 0 chr15 48822426 48822460 -36873294 + GC_rich Low_complexity Low_complexity 1 34 0 219 69 0 0 chr15 48822862 48822891 -36872863 + (CCG)n Simple_repeat Simple_repeat 3 31 0 284 102 20 0 chr15 48823181 48823230 -36872524 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 31 0 0 chr15 48824422 48824454 -36871300 + GC_rich Low_complexity Low_complexity 1 32 0 357 174 0 0 chr15 48825478 48825547 -36870207 + A-rich Low_complexity Low_complexity 1 69 0 232 250 141 11 chr15 48826399 48826491 -36869263 - MIR SINE MIR -117 145 42 3325 164 28 30 chr15 48827199 48827273 -36868481 - L1MB2 LINE L1 -315 5856 5783 189 0 0 0 chr15 48827273 48827294 -36868460 + (CA)n Simple_repeat Simple_repeat 2 22 0 3325 164 28 30 chr15 48827294 48827884 -36867870 - L1MB2 LINE L1 -388 5783 5201 1510 195 0 72 chr15 48827884 48828218 -36867536 - AluJb SINE Alu 0 312 3 3325 164 28 30 chr15 48828218 48828374 -36867380 - L1MB2 LINE L1 -970 5201 5046 709 194 30 0 chr15 48828476 48828641 -36867113 + L1MB2 LINE L1 6002 6171 0 258 281 45 0 chr15 48828724 48828813 -36866941 + LTR50 LTR ERVL 703 795 0 604 275 0 0 chr15 48829035 48829184 -36866570 + MIR SINE MIR 52 200 -62 543 199 105 118 chr15 48830249 48830501 -36865253 + LTR16A LTR ERVL 159 408 -42 1075 113 5 36 chr15 48830501 48830695 -36865059 + MER53 DNA DNA 2 189 0 543 199 105 118 chr15 48830695 48830738 -36865016 + LTR16A LTR ERVL 408 450 0 188 311 16 0 chr15 48830738 48830799 -36864955 - MIR SINE MIR -89 173 112 184 314 71 0 chr15 48831440 48831510 -36864244 + L2 LINE L2 2681 2755 -559 240 284 15 0 chr15 48831517 48831584 -36864170 + L2 LINE L2 2905 2972 -300 679 239 29 98 chr15 48832185 48832461 -36863293 - MIR SINE MIR -5 257 1 684 252 26 21 chr15 48832635 48832833 -36862921 + MIR SINE MIR 60 258 -4 204 306 16 0 chr15 48833334 48833396 -36862358 - L2 LINE L2 -219 3053 2991 253 308 39 0 chr15 48833697 48833775 -36861979 + MIR SINE MIR 81 161 -101 366 263 103 79 chr15 48834814 48834855 -36860899 - MIR SINE MIR -16 246 207 955 184 63 5 chr15 48834855 48835062 -36860692 + MER20 DNA MER1_type 1 219 0 366 263 103 79 chr15 48835062 48835105 -36860649 - MIR SINE MIR -55 207 166 2412 40 0 0 chr15 48835105 48835406 -36860348 + L1PA4 LINE L1 5855 6155 0 366 263 103 79 chr15 48835406 48835570 -36860184 - MIR SINE MIR -96 166 1 279 336 36 9 chr15 48836407 48836517 -36859237 - MIR SINE MIR -112 150 38 335 308 36 30 chr15 48836904 48837084 -36858670 - MIR SINE MIR -21 187 7 539 212 41 6 chr15 48837638 48837807 -36857947 + L1M4 LINE L1 5027 5200 -946 1408 138 0 93 chr15 48837811 48838058 -36857696 + AluJb SINE Alu 1 224 -88 238 300 23 85 chr15 48838346 48838377 -36857377 - MIR SINE MIR -87 175 144 207 0 0 0 chr15 48838377 48838400 -36857354 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6290 15 3 1 chr15 48838401 48839150 -36856604 - L1PA3 LINE L1 -1 6154 5405 238 300 23 85 chr15 48839150 48839246 -36856508 - MIR SINE MIR -117 145 54 664 258 143 32 chr15 48839770 48840515 -36855239 + L2 LINE L2 2495 3313 0 1935 154 43 3 chr15 48840529 48840853 -36854901 + MER1B DNA MER1_type 1 337 0 3581 148 71 5 chr15 48841614 48842261 -36853493 + L1MC2 LINE L1 5625 6314 -30 526 309 50 15 chr15 48842402 48842603 -36853151 + MIR SINE MIR 34 241 -21 267 284 0 14 chr15 48843101 48843175 -36852579 + MIR SINE MIR 71 143 -65 554 282 46 15 chr15 48843319 48843514 -36852240 + MIR SINE MIR 18 218 -44 4200 141 17 43 chr15 48843641 48844307 -36851447 + L1MC1 LINE L1 5160 5795 -538 847 144 0 0 chr15 48844307 48844439 -36851315 + FLAM_C SINE Alu 2 133 0 4200 141 17 43 chr15 48844439 48844664 -36851090 + L1MC1 LINE L1 5795 6024 -309 1208 185 5 10 chr15 48844664 48844869 -36850885 - AluJo SINE Alu -16 296 93 1846 142 28 3 chr15 48844869 48845186 -36850568 + L1MC1 LINE L1 6007 6331 -2 181 299 9 103 chr15 48845268 48845375 -36850379 - L3b LINE CR1 -11 1572 1476 307 266 156 23 chr15 48846413 48846541 -36849213 - MER63 DNA MER1_type -291 771 1 1795 171 13 10 chr15 48846589 48846887 -36848867 - AluJo SINE Alu -13 299 1 291 329 162 13 chr15 48847556 48847784 -36847970 + L2 LINE L2 2998 3259 -54 265 275 65 58 chr15 48847837 48847975 -36847779 + MIR SINE MIR 52 190 -72 662 245 61 0 chr15 48848190 48848353 -36847401 - MIR SINE MIR 0 262 90 390 42 0 0 chr15 48848563 48848611 -36847143 + (TG)n Simple_repeat Simple_repeat 2 49 0 184 347 74 0 chr15 48848751 48848846 -36846908 - L2 LINE L2 -10 3262 3161 269 292 42 8 chr15 48848895 48849015 -36846739 - MIR3 SINE MIR -82 126 3 298 327 109 0 chr15 48849572 48849682 -36846072 + MIR SINE MIR 28 149 -113 198 103 0 0 chr15 48849750 48849779 -36845975 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1782 122 0 141 chr15 48850485 48850847 -36844907 + AluSx SINE Alu 1 311 -1 203 219 0 0 chr15 48851016 48851057 -36844697 + L2 LINE L2 3262 3302 -11 276 321 209 7 chr15 48851830 48852107 -36843647 - L2 LINE L2 -14 3258 2926 196 313 0 0 chr15 48852174 48852241 -36843513 - L2 LINE L2 -536 2778 2712 194 376 25 37 chr15 48852737 48852899 -36842855 + L2 LINE L2 3109 3268 -4 273 344 11 0 chr15 48853147 48853237 -36842517 + L2 LINE L2 3181 3271 -1 351 293 52 0 chr15 48854137 48854253 -36841501 - MIR SINE MIR -10 252 131 1936 159 0 10 chr15 48854264 48854560 -36841194 + AluJo SINE Alu 1 293 -19 1019 264 88 31 chr15 48854568 48854955 -36840799 + MLT1I LTR MaLR 1 409 0 613 321 51 4 chr15 48856387 48856624 -36839130 + MIR SINE MIR 9 256 -6 244 266 23 78 chr15 48856778 48856906 -36838848 + MIR SINE MIR 34 154 -108 209 119 24 0 chr15 48856985 48857027 -36838727 + (TA)n Simple_repeat Simple_repeat 2 44 0 232 410 102 5 chr15 48858012 48858217 -36837537 - L3 LINE CR1 -255 1322 1098 1553 170 113 0 chr15 48858563 48858671 -36837083 + AluJo SINE Alu 2 96 -216 222 37 0 0 chr15 48858671 48858698 -36837056 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 1553 170 113 0 chr15 48858698 48858854 -36836900 + AluJo SINE Alu 96 296 -16 867 241 0 28 chr15 48859547 48859763 -36835991 + MER63A DNA MER1_type 1 210 0 507 222 59 2 chr15 48859979 48860213 -36835541 + AluJo SINE Alu 2 299 -13 587 228 8 0 chr15 48860214 48860337 -36835417 + MER5B DNA MER1_type 55 178 0 306 233 75 83 chr15 48860338 48860471 -36835283 + MER5B DNA MER1_type 46 177 -1 187 324 61 83 chr15 48861008 48861168 -36834586 + L2 LINE L2 2859 3021 -251 2075 110 44 41 chr15 48861168 48861531 -36834223 - THE1B LTR MaLR 0 364 1 187 324 61 83 chr15 48861531 48861777 -36833977 + L2 LINE L2 3021 3256 -16 23 0 0 0 chr15 48861790 48861813 -36833941 + AT_rich Low_complexity Low_complexity 1 23 0 1113 173 0 0 chr15 48861813 48861986 -36833768 - FRAM SINE Alu -3 173 1 1754 197 41 8 chr15 48862010 48862375 -36833379 + MLT1C LTR MaLR 1 377 -90 395 270 124 7 chr15 48862376 48862513 -36833241 - MIR SINE MIR -95 167 15 581 187 2 1 chr15 48862657 48862765 -36832989 + MLT1B LTR MaLR 294 390 0 392 342 7 7 chr15 48862819 48862968 -36832786 - L2 LINE L2 -5 3308 3160 2075 143 0 19 chr15 48863120 48863427 -36832327 - AluJb SINE Alu -9 303 3 2225 124 0 3 chr15 48863522 48863821 -36831933 - AluSx SINE Alu -14 298 1 26 30 0 0 chr15 48863823 48863856 -36831898 + AT_rich Low_complexity Low_complexity 1 33 0 553 273 6 44 chr15 48864445 48864628 -36831126 + MER5B DNA MER1_type 3 178 0 282 322 61 0 chr15 48864769 48864884 -36830870 - MIR SINE MIR -113 149 28 203 129 0 0 chr15 48865057 48865088 -36830666 + MIR SINE MIR 117 147 -115 222 261 46 15 chr15 48865916 48865981 -36829773 + MIR SINE MIR 117 183 -79 396 301 148 6 chr15 48866947 48867130 -36828624 - MIR SINE MIR -44 218 10 208 306 56 0 chr15 48867177 48867249 -36828505 - L2 LINE L2 -54 3218 3143 221 267 105 48 chr15 48867872 48867977 -36827777 + MIR3 SINE MIR 79 189 -19 357 308 94 0 chr15 48868273 48868390 -36827364 - MIR3 SINE MIR -34 174 47 2496 72 0 3 chr15 48869301 48869605 -36826149 - AluY SINE Alu -8 303 1 257 310 0 0 chr15 48870448 48870519 -36825235 - MIR SINE MIR -108 154 84 204 246 82 16 chr15 48870688 48870749 -36825005 - L2 LINE L2 -5 3267 3203 407 159 0 0 chr15 48870779 48870842 -36824912 - MER45 DNA AcHobo -1472 109 47 417 245 61 48 chr15 48871116 48871263 -36824491 - MIR SINE MIR -27 235 87 301 261 36 18 chr15 48871582 48871693 -36824061 - L1ME4a LINE L1 -39 6082 5970 * 764 263 44 58 chr15 48871685 48872063 -36823691 + L1MC4a LINE L1 5490 5742 -379 2228 145 54 20 chr15 48872063 48872469 -36823285 - MSTB LTR MaLR -4 422 3 764 263 44 58 chr15 48872469 48872551 -36823203 + L1MC4a LINE L1 5742 5824 -297 1891 170 0 7 chr15 48872945 48873233 -36822521 - AluJb SINE Alu -23 289 4 331 185 15 0 chr15 48874056 48874121 -36821633 - MLT1K LTR MaLR -4 584 519 2246 94 7 0 chr15 48874166 48874464 -36821290 + AluSx SINE Alu 1 300 -12 247 193 0 18 chr15 48874738 48874795 -36820959 - MLT1K LTR MaLR -346 242 187 756 254 136 22 chr15 48875207 48875612 -36820142 - HAL1 LINE L1 0 2507 2057 659 260 109 8 chr15 48875784 48876049 -36819705 - HAL1 LINE L1 -723 1784 1493 351 345 30 43 chr15 48876160 48876459 -36819295 - HAL1 LINE L1 -2208 299 5 343 267 87 50 chr15 48876462 48876623 -36819131 + L1MCa LINE L1 1926 2092 -4334 593 148 10 0 chr15 48876687 48876788 -36818966 - MSTD LTR MaLR -2 394 293 486 269 123 35 chr15 48876796 48877080 -36818674 - L1MC4a LINE L1 -302 5819 5548 1696 188 64 13 chr15 48877508 48877885 -36817869 + MSTD LTR MaLR 1 396 0 377 273 87 13 chr15 48877909 48878059 -36817695 - MIR3 SINE MIR -7 201 41 1660 146 56 23 chr15 48878487 48878774 -36816980 + AluJo SINE Alu 1 300 -12 225 0 0 0 chr15 48878774 48878799 -36816955 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 1660 146 56 23 chr15 48878799 48878813 -36816941 + AluJo SINE Alu 300 312 0 281 272 35 26 chr15 48879103 48879148 -36816606 + MIR SINE MIR 104 147 -115 389 165 13 13 chr15 48879148 48879227 -36816527 + MER116 DNA Mariner 1 79 -1 281 272 35 26 chr15 48879227 48879295 -36816459 + MIR SINE MIR 147 218 -44 627 301 38 10 chr15 48879369 48879609 -36816145 - MIR SINE MIR -6 256 2 481 278 59 12 chr15 48879756 48879925 -36815829 - MIR SINE MIR -79 183 7 2345 189 84 19 chr15 48880853 48881386 -36814368 + MER90 LTR ERV1 8 575 0 278 234 47 0 chr15 48881722 48881786 -36813968 + MIR3 SINE MIR 90 156 -52 203 314 98 0 chr15 48883004 48883106 -36812648 + MIR SINE MIR 41 152 -110 290 284 51 40 chr15 48883545 48883721 -36812033 + L2 LINE L2 2550 2727 -587 1581 208 115 16 chr15 48884673 48885125 -36810629 + MLT1D LTR MaLR 9 505 0 221 261 15 46 chr15 48885927 48885992 -36809762 + MIR3 SINE MIR 109 171 -37 393 327 20 13 chr15 48886182 48886335 -36809419 + MIR SINE MIR 89 242 -20 188 333 0 0 chr15 48886394 48886439 -36809315 + L2 LINE L2 3217 3261 -11 716 230 13 7 chr15 48886640 48886792 -36808962 + MIR SINE MIR 40 192 -70 224 300 0 25 chr15 48887661 48887741 -36808013 + MIR SINE MIR 73 150 -112 313 259 45 18 chr15 48887925 48888037 -36807717 - MIR SINE MIR -62 146 32 357 62 0 0 chr15 48888111 48888159 -36807595 + (GA)n Simple_repeat Simple_repeat 1 48 0 342 61 0 0 chr15 48888159 48888208 -36807546 + (TG)n Simple_repeat Simple_repeat 1 49 0 294 305 47 86 chr15 48888479 48888712 -36807042 + MIR SINE MIR 8 231 -31 191 330 39 10 chr15 48888715 48888818 -36806936 + MIR SINE MIR 140 245 -17 441 316 150 0 chr15 48889283 48889470 -36806284 + MIR SINE MIR 48 262 0 203 288 91 0 chr15 48889898 48889964 -36805790 + MIR SINE MIR 93 164 -98 192 288 0 34 chr15 48890254 48890313 -36805441 - MIR SINE MIR -204 58 2 836 248 161 37 chr15 48890366 48890819 -36804935 - MLT1H LTR MaLR 0 549 1 610 274 53 5 chr15 48890822 48891012 -36804742 + MIR SINE MIR 45 243 -19 236 254 148 41 chr15 48891061 48891183 -36804571 - MIR3 SINE MIR -72 136 2 430 286 42 26 chr15 48891221 48891413 -36804341 + MER117 DNA MER1_type 3 197 0 218 270 14 14 chr15 48891474 48891548 -36804206 - MIR3 SINE MIR -54 154 81 219 281 134 0 chr15 48892296 48892378 -36803376 + MIR3 SINE MIR 68 160 -48 25 0 0 0 chr15 48892444 48892469 -36803285 + AT_rich Low_complexity Low_complexity 1 25 0 341 282 201 0 chr15 48892481 48892630 -36803124 + Charlie8 DNA MER1_type 76 254 -2163 471 262 139 0 chr15 48892665 48892837 -36802917 + MER91A DNA MER1_type 1 196 0 362 278 43 0 chr15 48892927 48893042 -36802712 + MIR3 SINE MIR 81 200 -8 269 170 0 0 chr15 48893233 48893280 -36802474 + MER58 DNA MER1_type 2374 2420 0 616 232 0 1 chr15 48893316 48893449 -36802305 - MIR SINE MIR -44 164 32 2404 105 0 0 chr15 48894261 48894557 -36801197 + AluSq SINE Alu 1 296 -17 278 266 48 57 chr15 48895253 48895377 -36800377 + MIR3 SINE MIR 2 124 -84 284 301 0 36 chr15 48895645 48895728 -36800026 + MER5A DNA MER1_type 105 184 -5 797 121 0 23 chr15 48895750 48895882 -36799872 - FLAM_C SINE Alu 0 133 5 266 296 64 24 chr15 48896006 48896131 -36799623 - MIR SINE MIR -117 145 16 213 39 0 0 chr15 48896711 48896737 -36799017 + (TG)n Simple_repeat Simple_repeat 1 26 0 241 217 35 9 chr15 48896788 48896903 -36798851 + GA-rich Low_complexity Low_complexity 4 121 0 1430 125 125 94 chr15 48897065 48897362 -36798392 + AluJo SINE Alu 7 312 0 526 207 216 65 chr15 48897362 48897594 -36798160 - MER102b DNA MER1_type -51 290 24 651 250 54 31 chr15 48897625 48897849 -36797905 + MIR SINE MIR 20 248 -14 463 231 31 31 chr15 48898111 48898241 -36797513 - MIR3 SINE MIR -78 130 1 190 337 23 12 chr15 48898556 48898642 -36797112 + L2 LINE L2 3185 3271 -1 285 362 7 0 chr15 48898727 48898865 -36796889 + L1ME LINE L1 5507 5645 -476 391 333 6 23 chr15 48900074 48900245 -36795509 - MIR3 SINE MIR -28 180 13 2114 88 78 0 chr15 48900796 48901079 -36794675 - AluSq SINE Alu -8 305 1 2263 125 3 0 chr15 48901257 48901568 -36794186 - AluSx SINE Alu 0 312 1 765 244 38 70 chr15 48901584 48901899 -36793855 - L1ME4a LINE L1 -273 5848 5544 1047 287 70 116 chr15 48901990 48902919 -36792835 - L1ME4a LINE L1 -754 5392 4567 2558 91 0 0 chr15 48902919 48903226 -36792528 + AluSx SINE Alu 1 307 -5 1047 287 70 116 chr15 48903226 48903680 -36792074 - L1ME4a LINE L1 -1579 4567 4094 2234 84 4 0 chr15 48904231 48904506 -36791248 + AluY SINE Alu 1 276 -35 2417 92 0 0 chr15 48904517 48904823 -36790931 + AluY SINE Alu 1 306 -5 337 285 50 113 chr15 48904828 48905507 -36790247 - L1M4 LINE L1 -1602 4544 3931 2093 143 0 3 chr15 48905507 48905815 -36789939 - AluSx SINE Alu -5 307 1 337 285 50 113 chr15 48905815 48906011 -36789743 - L1M4 LINE L1 -2215 3931 3724 572 250 85 35 chr15 48906011 48906211 -36789543 + MIR SINE MIR 3 212 -50 453 272 66 7 chr15 48906203 48906339 -36789415 - MIR SINE MIR -50 212 69 * 205 369 45 0 chr15 48906434 48906545 -36789209 + L2 LINE L2 2932 3047 -225 491 314 141 0 chr15 48906698 48906918 -36788836 + MIR SINE MIR 3 253 -9 440 284 20 10 chr15 48907075 48907239 -36788515 - MIR SINE MIR -63 145 24 213 262 0 84 chr15 48907400 48907507 -36788247 + MIR SINE MIR 6 103 -159 349 336 17 0 chr15 48907631 48907747 -36788007 - MIR SINE MIR -113 149 32 317 287 31 23 chr15 48907952 48908081 -36787673 + MIR SINE MIR 16 145 -63 1090 285 86 7 chr15 48908413 48908866 -36786888 - LTR16C LTR ERVL -2 489 1 645 232 33 0 chr15 48908869 48909050 -36786704 - MER5A DNA MER1_type -2 187 1 468 0 0 0 chr15 48909057 48909109 -36786645 + (CA)n Simple_repeat Simple_repeat 1 52 0 385 287 67 49 chr15 48909545 48909709 -36786045 - MIR SINE MIR -75 187 21 302 322 5 2 chr15 48910642 48910754 -36785000 + MIR SINE MIR 22 135 -73 408 237 15 74 chr15 48910999 48911134 -36784620 - MIR3 SINE MIR -45 163 37 312 257 0 0 chr15 48911218 48911292 -36784462 - MLT1I LTR MaLR 0 409 336 1072 93 12 12 chr15 48911305 48911477 -36784277 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 1957 120 7 4 chr15 48911480 48911755 -36783999 - AluSx SINE Alu -36 276 1 2310 175 54 19 chr15 48911887 48912351 -36783403 - MLT2B1 LTR ERVL -40 480 1 219 260 19 39 chr15 48912764 48912868 -36782886 + G-rich Low_complexity Low_complexity 3 104 0 287 250 0 52 chr15 48913607 48913703 -36782051 - MLT1I LTR MaLR -3 406 316 187 326 144 24 chr15 48914149 48914483 -36781271 + L2 LINE L2 2382 2755 -559 195 42 0 0 chr15 48914879 48914903 -36780851 + (TGAG)n Simple_repeat Simple_repeat 1 24 0 511 247 104 7 chr15 48915730 48915884 -36779870 + MIR3 SINE MIR 22 190 -18 652 252 75 35 chr15 48916152 48916393 -36779361 + MIR SINE MIR 3 249 -13 287 259 161 9 chr15 48917375 48917487 -36778267 - MIR SINE MIR -111 151 23 405 214 2 0 chr15 48918318 48918403 -36777351 - MER58 DNA MER1_type -3 2417 126 234 109 0 87 chr15 48918489 48918535 -36777219 - MER5A DNA MER1_type -104 85 44 565 311 134 17 chr15 48918708 48919058 -36776696 + LTR16A LTR ERVL 60 450 0 324 254 80 43 chr15 48919219 48919357 -36776397 + MIR3 SINE MIR 3 145 -63 1875 191 43 43 chr15 48919383 48919876 -36775878 - MLT1D LTR MaLR -8 497 5 21 57 0 0 chr15 48919999 48920034 -36775720 + AT_rich Low_complexity Low_complexity 1 35 0 677 98 29 20 chr15 48920858 48920960 -36774794 + U6 snRNA snRNA 1 103 -4 297 346 72 13 chr15 48921220 48921373 -36774381 - L2 LINE L2 -503 2811 2650 234 276 14 0 chr15 48921787 48921873 -36773881 + MIR3 SINE MIR 73 160 -48 269 286 48 12 chr15 48922486 48922570 -36773184 + L2 LINE L2 3171 3257 -15 279 257 27 0 chr15 48922918 48922992 -36772762 - MIR SINE MIR -109 153 78 197 214 18 18 chr15 48923854 48923910 -36771844 + MIR SINE MIR 94 149 -59 238 311 0 0 chr15 48924895 48924956 -36770798 - MIR SINE MIR -84 124 64 243 254 0 0 chr15 48925089 48925152 -36770602 - L2 LINE L2 -331 2982 2920 231 114 0 0 chr15 48925899 48925934 -36769820 + (CA)n Simple_repeat Simple_repeat 2 36 0 705 228 32 42 chr15 48926446 48926635 -36769119 - MER5A DNA MER1_type -2 187 1 355 235 0 25 chr15 48927075 48927156 -36768598 + MIR3 SINE MIR 89 167 -41 400 268 36 2 chr15 48927656 48927773 -36767981 + MIR SINE MIR 15 140 -68 301 287 112 36 chr15 48927892 48928115 -36767639 + MIR SINE MIR 14 253 -9 823 200 100 0 chr15 48929334 48929504 -36766250 + AluJo SINE Alu 120 306 -6 458 257 130 11 chr15 48929574 48929858 -36765896 + MER114 LTR ERV 291 608 -40 980 213 56 31 chr15 48930417 48930704 -36765050 - MER2 DNA MER2_type -2 343 50 660 136 8 24 chr15 48930805 48930930 -36764824 - MLT2B2 LTR ERVL -392 123 1 559 278 19 28 chr15 48931445 48931661 -36764093 - L1MEc LINE L1 -6091 305 92 33 25 0 0 chr15 48931724 48931764 -36763990 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr15 48931808 48931829 -36763925 + AT_rich Low_complexity Low_complexity 1 21 0 351 259 88 47 chr15 48932078 48932248 -36763506 - MER5B DNA MER1_type 0 178 2 25 0 0 0 chr15 48934300 48934325 -36761429 + AT_rich Low_complexity Low_complexity 1 25 0 194 355 0 50 chr15 48934610 48934751 -36761003 + L2 LINE L2 2978 3111 -161 329 307 97 23 chr15 48934782 48934958 -36760796 + L2 LINE L2 3125 3313 0 21 0 0 0 chr15 48935079 48935100 -36760654 + AT_rich Low_complexity Low_complexity 1 21 0 192 290 29 0 chr15 48935260 48935329 -36760425 - MIR SINE MIR -110 152 82 219 293 67 0 chr15 48935714 48935789 -36759965 + L2 LINE L2 2909 2988 -284 722 220 172 37 chr15 48935798 48936152 -36759602 - MER21B LTR ERV1 -75 856 400 320 339 0 0 chr15 48936155 48936264 -36759490 + G-rich Low_complexity Low_complexity 4 112 0 605 237 25 41 chr15 48936264 48936547 -36759207 - MER21B LTR ERV1 -435 428 98 293 167 17 0 chr15 48937001 48937061 -36758693 + Charlie1 DNA MER1_type 2535 2595 -166 1963 84 0 8 chr15 48937064 48937315 -36758439 - AluY SINE Alu -5 306 58 227 324 9 57 chr15 48937374 48937479 -36758275 - MIR SINE MIR -66 142 43 26 30 0 0 chr15 48938045 48938078 -36757676 + AT_rich Low_complexity Low_complexity 1 33 0 1829 108 11 71 chr15 48939689 48940042 -36755712 - MER11A LTR ERVK 0 1266 935 584 288 131 72 chr15 48940467 48941532 -36754222 + L2 LINE L2 2067 3190 -82 218 207 172 17 chr15 48941532 48941590 -36754164 + L2 LINE L2 3144 3210 -62 1315 171 16 16 chr15 48941693 48941950 -36753804 - L1MB8 LINE L1 -13 6165 5909 4173 60 6 12 chr15 48941950 48942607 -36753147 + L1P3 LINE L1 5166 5819 -353 3958 60 25 8 chr15 48942608 48943122 -36752632 + L1PA8 LINE L1 5649 6171 -1 387 0 0 0 chr15 48943128 48943171 -36752583 + (TAA)n Simple_repeat Simple_repeat 2 44 0 593 286 6 6 chr15 48943199 48943370 -36752384 - MIR SINE MIR -36 226 56 339 241 45 0 chr15 48943992 48944104 -36751650 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 480 191 36 18 chr15 48944116 48944284 -36751470 + (TGGA)n Simple_repeat Simple_repeat 4 174 0 453 200 32 22 chr15 48944295 48944523 -36751231 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 387 211 37 12 chr15 48944616 48944777 -36750977 + (TGGA)n Simple_repeat Simple_repeat 1 165 0 183 156 0 0 chr15 48944856 48944888 -36750866 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 283 288 65 36 chr15 48945058 48945184 -36750570 - MIR SINE MIR -65 143 30 22 35 0 0 chr15 48945636 48945665 -36750089 + AT_rich Low_complexity Low_complexity 1 29 0 198 143 0 0 chr15 48946092 48946127 -36749627 + (TG)n Simple_repeat Simple_repeat 1 35 0 339 278 5 10 chr15 48946397 48946604 -36749150 + (TCCA)n Simple_repeat Simple_repeat 1 205 0 248 184 11 126 chr15 48946670 48946757 -36748997 - L3 LINE CR1 -166 1411 1335 2235 165 42 91 chr15 48948229 48948756 -36746998 + MLT2B1 LTR ERVL 8 508 -12 238 345 0 0 chr15 48948856 48948940 -36746814 - MIR SINE MIR 0 262 179 427 335 6 38 chr15 48949334 48949492 -36746262 - MIR3 SINE MIR -40 168 16 244 304 105 23 chr15 48949532 48949703 -36746051 - MIR3 SINE MIR -11 197 13 * 509 283 122 15 chr15 48949699 48949904 -36745850 - MIR SINE MIR -19 243 17 682 295 32 5 chr15 48951299 48951489 -36744265 + MIR SINE MIR 3 197 -65 978 150 6 0 chr15 48951497 48951677 -36744077 + L1MA6 LINE L1 6120 6300 0 180 261 92 0 chr15 48951683 48951748 -36744006 + MIR SINE MIR 183 253 -9 238 342 13 0 chr15 48952047 48952126 -36743628 - MIR SINE MIR -81 181 102 316 174 193 46 chr15 48952253 48952362 -36743392 + L2 LINE L2 2570 2694 -620 441 232 205 0 chr15 48952460 48952645 -36743109 - LTR33 LTR ERVL -200 321 99 237 222 19 0 chr15 48952658 48952712 -36743042 + MER69 DNA AcHobo 4 58 -2468 1902 152 3 25 chr15 48952745 48953061 -36742693 - AluSq SINE Alu -4 309 1 1000 157 69 25 chr15 48953449 48953532 -36742222 - AluJb SINE Alu -99 213 135 267 31 0 0 chr15 48953532 48953564 -36742190 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1000 157 69 25 chr15 48953564 48953684 -36742070 - AluJb SINE Alu -177 135 1 300 203 0 29 chr15 48953688 48953757 -36741997 + MER69 DNA AcHobo 2457 2523 -3 1162 253 140 20 chr15 48953851 48954396 -36741358 + L2 LINE L2 2695 3305 -8 201 216 0 0 chr15 48954397 48954434 -36741320 + L2 LINE L2 3236 3272 0 409 212 109 18 chr15 48955292 48955457 -36740297 + MER96B DNA MER1_type? 1 180 -237 2735 188 23 31 chr15 48955457 48956065 -36739689 + L1MC2 LINE L1 5733 6335 -9 341 86 0 57 chr15 48956070 48956140 -36739614 + MER96B DNA MER1_type? 114 179 -238 318 276 47 53 chr15 48956220 48956390 -36739364 - MIR3 SINE MIR -24 184 16 579 248 9 0 chr15 48959591 48959704 -36736050 + MER81 DNA DNA 1 114 0 193 273 36 101 chr15 48960318 48960457 -36735297 - MIR SINE MIR -25 237 108 459 223 153 75 chr15 48960842 48961068 -36734686 + MIR SINE MIR 5 250 -12 338 305 110 26 chr15 48961874 48962028 -36733726 + MIR3 SINE MIR 15 181 -27 191 327 77 10 chr15 48962545 48962649 -36733105 + L2 LINE L2 3203 3313 0 329 231 120 28 chr15 48963057 48963165 -36732589 - MIR SINE MIR -94 168 51 311 336 19 0 chr15 48963169 48963273 -36732481 - MIR SINE MIR -125 137 32 476 219 88 0 chr15 48964315 48964429 -36731325 + MER58A DNA MER1_type 6 129 0 816 240 130 0 chr15 48964432 48964632 -36731122 + MER8 DNA MER2_type 14 239 0 388 159 23 80 chr15 48964632 48964719 -36731035 + MER58A DNA MER1_type 142 223 -1 244 392 46 15 chr15 48964729 48964859 -36730895 + MIR SINE MIR 20 153 -109 578 219 0 25 chr15 48964881 48965000 -36730754 - MIR SINE MIR -21 241 126 258 32 0 0 chr15 48965553 48965584 -36730170 + (CA)n Simple_repeat Simple_repeat 2 32 0 580 281 15 35 chr15 48965586 48965785 -36729969 + MIR3 SINE MIR 4 198 -10 255 337 0 40 chr15 48965780 48965881 -36729873 - MIR SINE MIR -159 103 7 * 183 80 0 0 chr15 48966025 48966050 -36729704 + (CAT)n Simple_repeat Simple_repeat 3 27 0 714 260 32 46 chr15 48966058 48966277 -36729477 - MIR SINE MIR -41 221 6 591 327 121 23 chr15 48967526 48968106 -36727648 + L2 LINE L2 2447 3081 -232 1134 142 28 32 chr15 48968167 48968385 -36727369 - MER20 DNA MER1_type 0 219 3 464 264 40 60 chr15 48968472 48968673 -36727081 - L2 LINE L2 -94 3219 3023 429 314 11 47 chr15 48968670 48968861 -36726893 + L2 LINE L2 3113 3296 -17 * 203 302 16 0 chr15 48969262 48969325 -36726429 + L3 LINE CR1 1423 1486 -91 479 240 182 7 chr15 48969370 48969524 -36726230 - MER5A DNA MER1_type 0 189 9 378 208 0 0 chr15 48970051 48970128 -36725626 + MER116 DNA Mariner 4 80 0 392 225 150 8 chr15 48970147 48970267 -36725487 - MIR SINE MIR -92 170 34 468 209 139 19 chr15 48970294 48970452 -36725302 - MER5A DNA MER1_type 0 189 13 205 271 57 0 chr15 48971248 48971318 -36724436 - MIR SINE MIR 0 262 189 485 255 76 33 chr15 48971588 48971772 -36723982 + LTR16A1 LTR ERVL 259 450 -7 227 323 50 20 chr15 48971786 48971885 -36723869 - MIR SINE MIR -77 131 30 5232 119 12 2 chr15 48972131 48972801 -36722953 - L1PA13 LINE L1 -1 6162 5481 2324 86 0 26 chr15 48972801 48973114 -36722640 - AluSc SINE Alu -4 305 1 5232 119 12 2 chr15 48973114 48973263 -36722491 - L1PA13 LINE L1 -682 5481 5335 196 376 0 10 chr15 48973278 48973379 -36722375 + L2 LINE L2 3173 3272 0 353 108 0 31 chr15 48973691 48973756 -36721998 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 431 319 79 63 chr15 48973781 48974713 -36721041 - L2 LINE L2 -91 3181 2243 306 0 0 0 chr15 48975169 48975203 -36720551 + (CA)n Simple_repeat Simple_repeat 2 35 0 379 333 0 17 chr15 48975299 48975419 -36720335 - L1ME4a LINE L1 -6 6115 5998 298 261 70 25 chr15 48975419 48975618 -36720136 - HAL1b LINE L1 -231 1117 910 23 0 0 0 chr15 48975718 48975741 -36720013 + AT_rich Low_complexity Low_complexity 1 23 0 496 301 137 38 chr15 48976174 48976699 -36719055 - HAL1 LINE L1 -585 1922 1346 653 298 60 51 chr15 48976826 48977256 -36718498 + MLT1K LTR MaLR 155 588 0 414 238 81 127 chr15 48977256 48977752 -36718002 - HAL1 LINE L1 -1159 1348 876 2316 107 3 0 chr15 48978260 48978559 -36717195 - AluSx SINE Alu -12 300 1 209 296 17 70 chr15 48979441 48979556 -36716198 + MIR SINE MIR 86 194 -68 215 229 29 29 chr15 48979619 48979689 -36716065 - MIR SINE MIR -57 151 82 336 243 47 9 chr15 48980422 48980529 -36715225 - MIR SINE MIR -68 140 30 274 422 8 0 chr15 48980900 48981028 -36714726 + MIR SINE MIR 18 146 -116 400 241 93 31 chr15 48981109 48981271 -36714483 - MLT1H LTR MaLR -2 547 376 1001 215 177 8 chr15 48981301 48981538 -36714216 - MLT1H LTR MaLR -259 290 14 237 369 0 0 chr15 48981562 48981646 -36714108 - MIR SINE MIR -93 115 32 180 222 63 0 chr15 48982404 48982467 -36713287 + L2 LINE L2 2995 3061 -252 337 245 143 0 chr15 48982994 48983092 -36712662 + LTR67 LTR ERVL 435 546 -11 603 196 20 40 chr15 48983128 48983276 -36712478 + MIR SINE MIR 49 193 -69 901 251 94 43 chr15 48983281 48983731 -36712023 - MLT1H1 LTR MaLR -6 543 3 509 250 17 52 chr15 48983981 48984127 -36711627 + MIR3 SINE MIR 41 182 -26 2284 124 3 0 chr15 48984127 48984433 -36711321 - AluSx SINE Alu -3 309 3 509 250 17 52 chr15 48984433 48984458 -36711296 + MIR3 SINE MIR 182 206 -2 185 327 49 37 chr15 48985119 48985281 -36710473 - L2 LINE L2 -243 3029 2866 199 54 54 0 chr15 48985340 48985377 -36710377 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 321 243 131 9 chr15 48985378 48985485 -36710269 - L2 LINE L2 -26 3246 3127 482 315 155 17 chr15 48985620 48986328 -36709426 - L2 LINE L2 -201 3071 2265 266 171 14 0 chr15 48987015 48987085 -36708669 + (CAATT)n Simple_repeat Simple_repeat 3 73 0 257 245 204 0 chr15 48987730 48987828 -36707926 - L2 LINE L2 0 3272 3155 224 316 13 95 chr15 48988424 48988582 -36707172 + MIR SINE MIR 118 262 0 1052 301 55 24 chr15 48988968 48989200 -36706554 + L1M4 LINE L1 5214 5437 -741 1274 174 211 4 chr15 48989200 48989447 -36706307 + AluJb SINE Alu 1 298 -14 1052 301 55 24 chr15 48989447 48989830 -36705924 + L1M4 LINE L1 5437 5851 -327 346 296 80 62 chr15 48989956 48990230 -36705524 + L1MC4a LINE L1 5900 6178 -1630 394 241 0 11 chr15 48990982 48991069 -36704685 + MIR SINE MIR 69 154 -108 552 257 95 0 chr15 48991501 48991680 -36704074 - MIR SINE MIR -37 225 30 317 246 75 52 chr15 48992200 48992334 -36703420 - MIR3 SINE MIR -54 154 18 2493 72 0 0 chr15 48993503 48993796 -36701958 + AluSg SINE Alu 5 297 -13 323 340 26 20 chr15 48994018 48994171 -36701583 + MIR SINE MIR 33 186 -76 336 244 42 42 chr15 48995750 48995869 -36699885 + MIR SINE MIR 23 141 -67 358 344 62 10 chr15 48996495 48996687 -36699067 - MIR SINE MIR -25 237 36 262 279 158 6 chr15 48997098 48997263 -36698491 - MIR3 SINE MIR -16 192 3 228 35 103 0 chr15 48999043 48999101 -36696653 + (CCTG)n Simple_repeat Simple_repeat 2 65 0 2113 148 57 41 chr15 48999242 48999465 -36696289 - MSTB LTR MaLR 0 426 191 2239 112 3 13 chr15 48999465 48999768 -36695986 - AluSc SINE Alu -9 300 1 2113 148 57 41 chr15 48999768 48999963 -36695791 - MSTB LTR MaLR -235 191 1 757 229 78 0 chr15 49000263 49000442 -36695312 - MIR SINE MIR -18 244 52 354 289 29 132 chr15 49000567 49000847 -36694907 - L2 LINE L2 -51 3221 2971 1016 192 13 45 chr15 49001084 49001308 -36694446 - MER20 DNA MER1_type -2 217 1 444 186 93 0 chr15 49001499 49001596 -36694158 - MER117 DNA MER1_type -3 194 89 803 122 0 0 chr15 49001696 49001811 -36693943 - FLAM_C SINE Alu -18 115 1 314 278 104 11 chr15 49002287 49002469 -36693285 - MIR SINE MIR -12 250 43 669 218 151 10 chr15 49002665 49002871 -36692883 + MIR SINE MIR 7 241 -21 617 334 79 29 chr15 49003323 49003802 -36691952 + LTR67 LTR ERVL 4 506 -51 263 329 12 0 chr15 49004539 49004621 -36691133 - MIR SINE MIR -62 146 64 187 140 40 0 chr15 49004996 49005046 -36690708 + GA-rich Low_complexity Low_complexity 1 52 0 312 308 8 0 chr15 49005385 49005518 -36690236 + (TG)n Simple_repeat Simple_repeat 1 134 0 922 199 18 0 chr15 49005994 49006165 -36689589 - MER3 DNA MER1_type -29 180 7 187 328 75 8 chr15 49006179 49006313 -36689441 + L2 LINE L2 2923 3065 -207 238 239 14 42 chr15 49007704 49007775 -36687979 - L2 LINE L2 -14 3258 3190 332 238 66 53 chr15 49008993 49009144 -36686610 - MIR3 SINE MIR -49 159 7 455 216 112 9 chr15 49009422 49009538 -36686216 - MER91A DNA MER1_type -10 186 59 278 274 43 26 chr15 49009954 49010071 -36685683 - MIR SINE MIR -73 189 71 239 229 16 0 chr15 49010384 49010445 -36685309 - MIR SINE MIR -122 140 79 1469 143 135 0 chr15 49010918 49011225 -36684529 + AluSx SINE Alu 1 343 0 218 333 127 27 chr15 49011246 49011396 -36684358 - MIR SINE MIR -12 250 86 510 286 52 24 chr15 49011438 49011648 -36684106 + MIR SINE MIR 47 262 0 457 218 121 46 chr15 49012595 49012754 -36683000 - MLT1J1 LTR MaLR -10 501 266 368 335 61 5 chr15 49013741 49013938 -36681816 + MIR SINE MIR 8 215 -47 310 305 51 8 chr15 49013912 49014030 -36681724 - L2 LINE L2 0 3313 3191 * 240 287 23 0 chr15 49014058 49014145 -36681609 + L1MC4 LINE L1 6615 6703 -1339 242 143 20 0 chr15 49014145 49014194 -36681560 + (TA)n Simple_repeat Simple_repeat 2 51 0 2365 97 0 7 chr15 49015992 49016292 -36679462 - AluSx SINE Alu -14 298 1 238 358 0 0 chr15 49016800 49016881 -36678873 - L2 LINE L2 0 3272 3192 197 260 0 0 chr15 49017168 49017218 -36678536 - L2 LINE L2 -6 3266 3217 433 293 121 14 chr15 49017250 49017390 -36678364 - L2 LINE L2 -6 3266 3112 235 315 22 0 chr15 49017398 49017490 -36678264 + CT-rich Low_complexity Low_complexity 1 94 0 414 309 72 11 chr15 49018072 49018253 -36677501 + MIR SINE MIR 57 248 -14 509 217 76 32 chr15 49018421 49018578 -36677176 - MER103 DNA DNA -1 165 2 1545 116 141 2 chr15 49018629 49019014 -36676740 + LTR54 LTR ERV1 1 510 0 428 212 10 10 chr15 49019313 49019412 -36676342 - L1MD2 LINE L1 -16 6343 6245 375 309 76 34 chr15 49020050 49020286 -36675468 + MIR SINE MIR 17 262 0 350 242 130 76 chr15 49020630 49020907 -36674847 + L1MC4a LINE L1 5883 6174 -1634 822 199 53 12 chr15 49021012 49021183 -36674571 + MER45A DNA AcHobo 1 178 0 476 259 0 9 chr15 49021399 49021511 -36674243 - MER94 DNA DNA 0 134 24 715 222 28 17 chr15 49021872 49022048 -36673706 - MER5B DNA MER1_type 0 178 1 312 293 85 18 chr15 49022169 49022353 -36673401 - MIR SINE MIR -27 235 42 560 208 56 0 chr15 49022413 49022557 -36673197 + L1ME4a LINE L1 5964 6115 -6 461 270 101 46 chr15 49022808 49023153 -36672601 - L1ME4a LINE L1 -24 6097 5734 299 232 37 24 chr15 49023935 49024017 -36671737 - MER90 LTR ERV1 -16 559 477 1319 55 0 0 chr15 49024638 49024801 -36670953 + L1PA8 LINE L1 6005 6167 -5 252 274 44 53 chr15 49024816 49024929 -36670825 + MIR SINE MIR 151 262 0 215 274 97 18 chr15 49025170 49025283 -36670471 + MIR SINE MIR 87 208 -54 2213 109 0 0 chr15 49026411 49026714 -36669040 + AluSc SINE Alu 1 303 -6 1739 152 0 10 chr15 49026719 49027015 -36668739 + AluSg SINE Alu 5 297 -13 401 258 14 89 chr15 49029063 49029276 -36666478 - MIR SINE MIR -25 237 41 319 284 69 29 chr15 49029413 49029515 -36666239 + L2 LINE L2 3164 3269 -3 1152 124 0 2 chr15 49029536 49030080 -36665674 + (TGGA)n Simple_repeat Simple_repeat 1 543 0 535 318 86 5 chr15 49030105 49030303 -36665451 + MIR SINE MIR 13 226 -36 281 246 16 87 chr15 49030775 49030848 -36664906 - MLT1L LTR MaLR -2 613 551 2054 122 0 22 chr15 49030848 49031167 -36664587 + AluSx SINE Alu 1 312 0 281 246 16 87 chr15 49031167 49031219 -36664535 - MLT1L LTR MaLR -64 551 497 225 94 0 0 chr15 49031723 49031755 -36663999 + (TG)n Simple_repeat Simple_repeat 2 33 0 921 216 30 142 chr15 49032022 49032178 -36663576 + L1ME3 LINE L1 5732 5904 -258 1859 133 0 26 chr15 49032178 49032486 -36663268 - AluSq SINE Alu -13 300 1 921 216 30 142 chr15 49032486 49032731 -36663023 + L1ME3 LINE L1 5904 6088 -74 490 232 118 89 chr15 49032825 49033264 -36662490 + L1MC4a LINE L1 5603 6054 -1754 189 0 0 0 chr15 49033743 49033764 -36661990 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 659 130 19 19 chr15 49033850 49033958 -36661796 + MIR SINE MIR 113 220 -42 185 327 0 0 chr15 49034396 49034451 -36661303 + MIR SINE MIR 103 157 -105 393 257 67 0 chr15 49035822 49035927 -36659827 + MIR SINE MIR 80 191 -71 403 264 97 7 chr15 49036360 49036504 -36659250 + MIR SINE MIR 47 203 -59 295 289 67 0 chr15 49037289 49037379 -36658375 - MIR SINE MIR -62 146 51 201 240 20 0 chr15 49037839 49037889 -36657865 + L3 LINE CR1 1421 1471 -106 474 242 227 0 chr15 49038272 49038404 -36657350 + MER5A DNA MER1_type 13 174 -15 1405 176 55 50 chr15 49038409 49038772 -36656982 - LTR37A LTR ERV1 -16 410 46 269 280 34 34 chr15 49039416 49039534 -36656220 + MIR SINE MIR 2 119 -143 * 286 336 187 20 chr15 49039511 49039859 -36655895 - L2 LINE L2 -21 3292 2887 439 343 67 22 chr15 49039872 49040050 -36655704 - MER5A DNA MER1_type -2 187 2 215 250 0 0 chr15 49040183 49040227 -36655527 + L2 LINE L2 3209 3252 -20 464 274 38 25 chr15 49040286 49040443 -36655311 + MIR3 SINE MIR 19 177 -31 321 227 219 23 chr15 49040505 49040633 -36655121 + MER5B DNA MER1_type 1 153 -25 1531 154 28 42 chr15 49040805 49041090 -36654664 - AluJo SINE Alu -31 281 1 22 0 0 0 chr15 49041112 49041134 -36654620 + AT_rich Low_complexity Low_complexity 1 22 0 388 226 0 0 chr15 49041230 49041336 -36654418 - L1ME1 LINE L1 -5 6161 6065 399 269 42 0 chr15 49041459 49041578 -36654176 + MER94 DNA DNA 10 133 -1 1221 140 21 0 chr15 49042130 49042323 -36653431 - AluJb SINE Alu -30 282 86 514 228 15 22 chr15 49042654 49042790 -36652964 - HAL1 LINE L1 -806 1701 1567 951 229 62 12 chr15 49042811 49043051 -36652703 + MIR SINE MIR 3 254 -8 638 258 98 90 chr15 49043051 49043562 -36652192 - HAL1 LINE L1 -967 1540 1026 4092 197 38 6 chr15 49043900 49044798 -36650956 - MER63C DNA MER1_type -1 929 3 427 289 74 8 chr15 49044805 49044926 -36650828 + MIR SINE MIR 16 144 -64 349 383 134 5 chr15 49044961 49045073 -36650681 + MIR SINE MIR 1 97 -165 1768 202 42 13 chr15 49045073 49045459 -36650295 - MLT2C1 LTR ERVL 0 397 1 349 383 134 5 chr15 49045459 49045547 -36650207 + MIR SINE MIR 97 227 -35 371 271 53 53 chr15 49046499 49046687 -36649067 - MIR3 SINE MIR -11 197 10 339 241 45 0 chr15 49047423 49047535 -36648219 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 444 195 37 18 chr15 49047547 49047711 -36648043 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 453 211 36 25 chr15 49047722 49048127 -36647627 + (TGGA)n Simple_repeat Simple_repeat 1 409 0 437 223 31 29 chr15 49048168 49048961 -36646793 + (TGGA)n Simple_repeat Simple_repeat 1 795 0 281 288 65 36 chr15 49049131 49049257 -36646497 - MIR SINE MIR -65 143 30 22 35 0 0 chr15 49049709 49049738 -36646016 + AT_rich Low_complexity Low_complexity 1 29 0 265 137 222 103 chr15 49049738 49049855 -36645899 - L1MC4 LINE L1 -10 8032 7902 229 229 0 0 chr15 49049855 49049903 -36645851 + (TA)n Simple_repeat Simple_repeat 2 49 0 3880 199 57 21 chr15 49049906 49050800 -36644954 - L1MC4 LINE L1 -124 7918 6993 * 4273 185 11 67 chr15 49050783 49051652 -36644102 - L1MD1 LINE L1 0 6242 5437 1515 175 70 11 chr15 49051652 49051937 -36643817 - AluJo SINE Alu -4 308 7 4273 185 11 67 chr15 49051937 49052090 -36643664 - L1MD1 LINE L1 -805 5437 5277 292 291 66 60 chr15 49052172 49052323 -36643431 - L2 LINE L2 0 3313 3162 371 313 53 13 chr15 49052658 49052808 -36642946 + MIR SINE MIR 93 248 -14 2192 115 0 10 chr15 49052863 49053176 -36642578 + AluSg SINE Alu 1 310 0 962 276 89 52 chr15 49053440 49054111 -36641643 + L2 LINE L2 1753 2448 -866 816 11 0 0 chr15 49054432 49054525 -36641229 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 1840 129 17 24 chr15 49054525 49054819 -36640935 - MER4A LTR ERV1 -1 663 372 706 82 0 10 chr15 49054859 49054956 -36640798 - MER4A LTR ERV1 -566 98 3 270 143 0 0 chr15 49054957 49055006 -36640748 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 181 233 23 0 chr15 49055379 49055422 -36640332 - L2 LINE L2 -7 3306 3263 * 544 257 137 0 chr15 49055388 49055563 -36640191 - MIR SINE MIR -10 252 54 1506 237 98 88 chr15 49055624 49055956 -36639798 - HAL1 LINE L1 -13 2494 2167 786 137 0 89 chr15 49055956 49056102 -36639652 + FLAM_C SINE Alu 1 133 0 1506 237 98 88 chr15 49056102 49056613 -36639141 - HAL1 LINE L1 -340 2167 1642 * 1618 242 102 29 chr15 49056612 49057170 -36638584 - HAL1 LINE L1 -1814 693 95 337 332 18 50 chr15 49057356 49057563 -36638191 + MIR SINE MIR 36 234 -28 207 366 118 39 chr15 49057599 49057878 -36637876 - L2 LINE L2 -39 3233 2933 183 80 0 0 chr15 49058278 49058303 -36637451 + (GCTG)n Simple_repeat Simple_repeat 2 26 0 522 224 11 6 chr15 49058537 49058716 -36637038 + (CCA)n Simple_repeat Simple_repeat 1 180 0 186 341 136 18 chr15 49059024 49059297 -36636457 + L2 LINE L2 92 396 -2918 344 319 11 0 chr15 49059433 49059524 -36636230 + MIR SINE MIR 53 144 -118 5156 106 68 30 chr15 49059727 49060567 -36635187 - MER4D LTR ERV1 0 872 1 215 225 0 0 chr15 49060611 49060651 -36635103 + L2 LINE L2 3233 3272 0 663 212 53 18 chr15 49060912 49061082 -36634672 + MER5B DNA MER1_type 3 178 0 180 176 0 0 chr15 49061189 49061223 -36634531 + CT-rich Low_complexity Low_complexity 3 36 0 309 288 176 7 chr15 49061758 49061911 -36633843 + MER5A DNA MER1_type 11 189 0 244 294 144 20 chr15 49061941 49062094 -36633660 + MIR SINE MIR 1 172 -90 2081 128 0 0 chr15 49062171 49062469 -36633285 + AluSx SINE Alu 1 298 -14 269 332 102 21 chr15 49062479 49062714 -36633040 - MIR SINE MIR -6 256 3 669 285 61 18 chr15 49063015 49063243 -36632511 + MIR SINE MIR 8 245 -17 23 54 0 0 chr15 49063530 49063567 -36632187 + AT_rich Low_complexity Low_complexity 1 37 0 1296 245 65 14 chr15 49064214 49064565 -36631189 + L3 LINE CR1 593 961 -616 297 292 182 38 chr15 49064699 49064895 -36630859 - MIR SINE MIR -2 260 16 257 287 100 80 chr15 49064893 49065043 -36630711 - MIR3 SINE MIR -39 169 17 * 681 277 51 0 chr15 49065435 49065569 -36630185 - MIR SINE MIR -10 252 103 461 278 0 9 chr15 49065569 49065684 -36630070 + MER81 DNA DNA 1 114 0 681 277 51 0 chr15 49065684 49065744 -36630010 - MIR SINE MIR -159 103 48 949 318 74 37 chr15 49066102 49066589 -36629165 + L3 LINE CR1 1062 1566 -11 266 200 20 0 chr15 49067408 49067458 -36628296 + MIR SINE MIR 110 160 -102 418 156 0 0 chr15 49067460 49067524 -36628230 + AluJ/FLAM SINE Alu 2 65 -247 271 307 40 0 chr15 49067530 49067605 -36628149 + MIR SINE MIR 151 228 -34 235 269 77 13 chr15 49067642 49067720 -36628034 + L2 LINE L2 2987 3069 -203 297 291 115 54 chr15 49067819 49067967 -36627787 + L2 LINE L2 3115 3271 -1 1761 289 38 16 chr15 49069792 49070342 -36625412 + MLT1K LTR MaLR 3 564 -24 32 26 0 0 chr15 49070699 49070738 -36625016 + AT_rich Low_complexity Low_complexity 1 39 0 568 238 6 43 chr15 49070823 49070987 -36624767 - MIR3 SINE MIR -5 203 46 388 293 79 43 chr15 49071110 49071250 -36624504 + MIR3 SINE MIR 16 160 -48 2330 90 3 0 chr15 49072172 49072483 -36623271 - AluSp SINE Alu 0 313 2 187 282 106 35 chr15 49072508 49072593 -36623161 - L2 LINE L2 -14 3258 3168 856 139 16 16 chr15 49072639 49072890 -36622864 + GA-rich Low_complexity Low_complexity 1 251 0 273 261 159 33 chr15 49072927 49073164 -36622590 - MLT1K LTR MaLR -105 483 109 210 222 0 0 chr15 49073345 49073390 -36622364 + C-rich Low_complexity Low_complexity 3 47 0 305 245 57 28 chr15 49074126 49074232 -36621522 + MIR SINE MIR 40 148 -60 228 179 0 0 chr15 49075230 49075269 -36620485 - MER3 DNA MER1_type -160 49 11 2459 212 70 13 chr15 49075269 49075888 -36619866 - L1ME2 LINE L1 -149 6015 5362 3698 218 44 32 chr15 49075890 49077131 -36618623 - L1ME2 LINE L1 -1070 5076 3821 320 333 81 17 chr15 49078051 49078471 -36617283 + L2 LINE L2 1584 2030 -1284 226 268 61 37 chr15 49078744 49078826 -36616928 + L2 LINE L2 3190 3273 -40 442 393 4 8 chr15 49079516 49079758 -36615996 + MIR SINE MIR 8 248 -14 225 318 78 23 chr15 49080975 49081104 -36614650 + MIR3 SINE MIR 5 140 -68 245 259 139 16 chr15 49081424 49081561 -36614193 + MIR3 SINE MIR 2 152 -80 341 74 0 19 chr15 49082087 49082141 -36613613 + (TG)n Simple_repeat Simple_repeat 2 54 0 756 316 56 62 chr15 49082328 49082968 -36612786 + ERVL LTR ERVL 4413 5048 -716 2048 134 0 0 chr15 49083842 49084149 -36611605 - AluSx SINE Alu -5 307 1 1513 113 0 22 chr15 49085136 49085367 -36610387 - AluSx SINE Alu -86 226 1 301 264 187 13 chr15 49085428 49085583 -36610171 - MIR3 SINE MIR -8 200 19 476 301 31 31 chr15 49086361 49086524 -36609230 + MIR SINE MIR 44 206 -56 323 329 180 6 chr15 49086844 49087005 -36608749 - MIR SINE MIR -11 251 63 466 242 66 0 chr15 49087389 49087530 -36608224 + MIR3 SINE MIR 35 192 -16 252 0 0 0 chr15 49087555 49087583 -36608171 + (T)n Simple_repeat Simple_repeat 1 28 0 252 292 0 62 chr15 49088137 49088265 -36607489 - MIR3 SINE MIR -54 154 33 247 128 64 21 chr15 49088346 49088393 -36607361 - L2 LINE L2 -10 3303 3255 202 254 154 54 chr15 49088490 49088620 -36607134 - MIR SINE MIR -100 162 20 430 287 7 52 chr15 49089021 49089157 -36606597 - L2 LINE L2 0 3313 3184 320 333 31 25 chr15 49089612 49089771 -36605983 + MER5A DNA MER1_type 26 185 -4 378 258 220 0 chr15 49089838 49089970 -36605784 - MER5B DNA MER1_type -4 174 14 239 135 0 96 chr15 49090138 49090190 -36605564 - L2 LINE L2 -27 3245 3199 217 215 123 0 chr15 49090310 49090375 -36605379 - MIR3 SINE MIR -54 154 82 238 224 35 71 chr15 49090590 49090613 -36605141 - MIR3 SINE MIR -42 166 144 2501 167 31 0 chr15 49090613 49091026 -36604728 - MSTB LTR MaLR 0 426 1 238 224 35 71 chr15 49091026 49091087 -36604667 - MIR3 SINE MIR -64 144 85 618 224 4 0 chr15 49091089 49091328 -36604426 + (CA)n Simple_repeat Simple_repeat 1 240 0 593 207 0 6 chr15 49091350 49091529 -36604225 + (CA)n Simple_repeat Simple_repeat 1 178 0 333 228 13 13 chr15 49092406 49092485 -36603269 + MIR SINE MIR 16 94 -168 595 217 0 22 chr15 49093042 49093222 -36602532 + GA-rich Low_complexity Low_complexity 4 179 0 571 296 161 34 chr15 49094214 49094677 -36601077 - MLT1K LTR MaLR -29 559 30 2106 110 10 0 chr15 49094750 49095051 -36600703 - AluSx SINE Alu -8 304 1 334 177 16 0 chr15 49095121 49095183 -36600571 + MER5A DNA MER1_type 3 65 -124 188 256 67 67 chr15 49095496 49095586 -36600168 - L2 LINE L2 -34 3238 3149 242 276 13 53 chr15 49096201 49096277 -36599477 - L2 LINE L2 0 3272 3200 284 222 222 0 chr15 49096326 49096416 -36599338 - MIR3 SINE MIR -53 155 46 629 284 122 0 chr15 49096982 49097179 -36598575 - MIR SINE MIR -24 238 18 480 264 93 70 chr15 49097227 49097644 -36598110 - L1MC5 LINE L1 -54 7907 7481 661 266 30 20 chr15 49098658 49098857 -36596897 + MIR SINE MIR 52 252 -10 282 281 21 10 chr15 49099524 49099572 -36596182 + MER103 DNA DNA 4 50 -116 2152 103 3 0 chr15 49099572 49099872 -36595882 + AluSg SINE Alu 2 302 -8 282 281 21 10 chr15 49099872 49099919 -36595835 + MER103 DNA DNA 50 100 -66 2845 241 81 53 chr15 49100032 49100465 -36595289 - L1MEc LINE L1 -2467 3613 3193 231 36 0 0 chr15 49100465 49100493 -36595261 + (CA)n Simple_repeat Simple_repeat 2 29 0 2845 241 81 53 chr15 49100493 49100729 -36595025 - L1MEc LINE L1 -2887 3193 2965 2089 89 4 4 chr15 49100729 49101038 -36594716 - AluY SINE Alu 0 309 1 2845 241 81 53 chr15 49101038 49101770 -36593984 - L1MEc LINE L1 -3115 2965 2172 1047 246 92 25 chr15 49101757 49102719 -36593035 - L1MEc LINE L1 -4579 1682 519 * 809 329 47 18 chr15 49102930 49103374 -36592380 - L1MEc LINE L1 -5608 462 6 343 287 11 0 chr15 49103401 49103488 -36592266 - MIR SINE MIR -79 129 42 280 311 4 38 chr15 49103726 49103955 -36591799 + L2 LINE L2 2193 2476 -838 211 299 0 0 chr15 49105152 49105219 -36590535 + MIR SINE MIR 62 128 -80 313 340 14 71 chr15 49106142 49106283 -36589471 - L2 LINE L2 -1 3271 3139 1931 130 10 0 chr15 49106301 49106593 -36589161 + AluSx SINE Alu 1 295 -17 26 64 0 0 chr15 49106689 49106736 -36589018 + AT_rich Low_complexity Low_complexity 1 47 0 253 164 41 68 chr15 49106940 49107013 -36588741 + LTR54 LTR ERV1 402 472 -38 370 270 111 16 chr15 49107092 49107281 -36588473 + MIR SINE MIR 50 256 -6 36995 86 11 13 chr15 49107798 49110738 -36585016 - L1PA6 LINE L1 -1 6153 3208 414 0 0 0 chr15 49110738 49110784 -36584970 + (TG)n Simple_repeat Simple_repeat 2 47 0 36995 86 11 13 chr15 49110784 49113858 -36581896 - L1PA6 LINE L1 -2946 3208 152 446 248 59 0 chr15 49113895 49113996 -36581758 + L2 LINE L2 3195 3301 -12 1347 171 57 4 chr15 49114010 49114291 -36581463 - L1MA6 LINE L1 0 6300 6005 805 134 30 0 chr15 49114300 49114434 -36581320 - L1 LINE L1 -1110 5036 4899 9779 140 24 10 chr15 49114450 49115796 -36579958 - L1MA6 LINE L1 -307 5993 4609 2152 106 0 0 chr15 49115796 49116088 -36579666 + AluSc SINE Alu 1 292 -17 9779 140 24 10 chr15 49116088 49117102 -36578652 - L1MA6 LINE L1 -1691 4609 3611 757 61 35 0 chr15 49117103 49117217 -36578537 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 222 62 0 0 chr15 49117344 49117376 -36578378 + (A)n Simple_repeat Simple_repeat 1 32 0 441 0 0 0 chr15 49118542 49118591 -36577163 + (TG)n Simple_repeat Simple_repeat 2 50 0 406 267 140 45 chr15 49118821 49119042 -36576712 + MIR SINE MIR 3 244 -18 191 188 333 0 chr15 49119458 49119527 -36576227 - MIR SINE MIR -68 140 49 414 265 78 29 chr15 49120181 49120385 -36575369 - L2 LINE L2 -23 3290 3077 253 262 0 71 chr15 49120433 49120517 -36575237 + MIR SINE MIR 110 187 -75 192 237 186 41 chr15 49120529 49120626 -36575128 - L2 LINE L2 -3111 203 93 193 262 121 71 chr15 49120824 49120965 -36574789 + MIR3 SINE MIR 16 163 -45 237 255 69 69 chr15 49121081 49121183 -36574571 - MIR SINE MIR -6 256 155 198 250 17 50 chr15 49121207 49121267 -36574487 + MIR3 SINE MIR 98 155 -53 189 263 0 0 chr15 49121668 49121706 -36574048 + MIR3 SINE MIR 117 154 -54 328 263 123 16 chr15 49121764 49121910 -36573844 + MIR SINE MIR 31 182 -68 365 305 127 15 chr15 49121936 49122119 -36573635 + MIR SINE MIR 3 196 -66 1928 198 44 9 chr15 49122178 49122608 -36573146 + MLT1F LTR MaLR 5 449 -93 516 118 10 49 chr15 49122789 49122891 -36572863 + MLT1F LTR MaLR 445 542 0 224 225 141 0 chr15 49124999 49125070 -36570684 - MIR3 SINE MIR -11 197 117 456 231 0 0 chr15 49125183 49125274 -36570480 + MIR SINE MIR 33 123 -85 378 0 0 0 chr15 49125297 49125339 -36570415 + (TG)n Simple_repeat Simple_repeat 1 42 0 317 333 0 0 chr15 49125373 49125463 -36570291 - L1MC4 LINE L1 -1339 6703 6614 * 346 315 0 0 chr15 49125384 49125473 -36570281 + L1MC4 LINE L1 6615 6703 -1339 327 333 0 0 chr15 49125481 49125571 -36570183 - L1MC4 LINE L1 -1339 6703 6614 * 339 279 47 0 chr15 49125505 49125591 -36570163 + L1MC4 LINE L1 6614 6703 -1339 187 161 36 0 chr15 49125791 49125847 -36569907 + (CAGGC)n Simple_repeat Simple_repeat 3 60 0 324 0 0 0 chr15 49127286 49127322 -36568432 + (CA)n Simple_repeat Simple_repeat 2 37 0 182 388 0 0 chr15 49128300 49128380 -36567374 - MIR SINE MIR -108 154 75 405 221 19 48 chr15 49128622 49128726 -36567028 + MER5A DNA MER1_type 89 189 0 577 247 11 40 chr15 49128743 49128917 -36566837 - MER5B DNA MER1_type -8 170 2 292 193 0 184 chr15 49129675 49129784 -36565970 - MER102a DNA MER1_type -21 309 221 281 299 127 13 chr15 49130512 49130820 -36564934 + HAL1b LINE L1 196 538 -810 959 161 0 0 chr15 49130828 49130971 -36564783 + FLAM_C SINE Alu 1 143 0 239 175 0 0 chr15 49130982 49131039 -36564715 + L1ME1 LINE L1 4978 5034 -1112 352 104 30 0 chr15 49131045 49131112 -36564642 + (TA)n Simple_repeat Simple_repeat 2 70 0 2346 216 87 4 chr15 49131140 49131897 -36563857 + L1ME1 LINE L1 5057 5866 -300 1918 113 4 0 chr15 49131997 49132244 -36563510 - AluSq SINE Alu -65 248 1 703 276 33 67 chr15 49132283 49132642 -36563112 + L1ME3A LINE L1 5599 5945 -225 1492 267 40 49 chr15 49132703 49133320 -36562434 + L1MC4a LINE L1 5315 5926 -1882 240 259 0 49 chr15 49134090 49134171 -36561583 + MER103 DNA DNA 87 163 -3 1072 311 58 43 chr15 49134221 49134820 -36560934 - L3 LINE CR1 -233 1344 737 332 243 257 15 chr15 49134819 49134955 -36560799 + MIR3 SINE MIR 25 193 -15 * 589 265 87 27 chr15 49134973 49135192 -36560562 - L3 LINE CR1 -854 723 492 2258 90 33 0 chr15 49135257 49135556 -36560198 + AluY SINE Alu 1 309 -2 44 20 0 0 chr15 49135994 49136045 -36559709 + AT_rich Low_complexity Low_complexity 1 51 0 277 187 19 122 chr15 49136265 49136322 -36559432 - MIR3 SINE MIR -9 199 156 2106 123 7 23 chr15 49136322 49136622 -36559132 - AluSx SINE Alu -17 295 1 277 187 19 122 chr15 49136622 49136671 -36559083 - MIR3 SINE MIR -52 156 104 898 244 103 0 chr15 49136752 49136965 -36558789 - MIR SINE MIR -1 261 27 1221 275 127 16 chr15 49137002 49137603 -36558151 + L2 LINE L2 2631 3311 -2 2073 153 10 54 chr15 49138426 49138813 -36556941 - L1MB5 LINE L1 -9 6165 5796 195 129 0 0 chr15 49138952 49138983 -36556771 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 787 202 51 11 chr15 49140305 49140483 -36555271 + MER5A DNA MER1_type 1 185 -4 609 285 67 10 chr15 49140764 49140957 -36554797 + MIR SINE MIR 16 219 -43 227 285 21 39 chr15 49141273 49141468 -36554286 + GA-rich Low_complexity Low_complexity 1 191 0 352 279 195 0 chr15 49142067 49142221 -36553533 + MER91A DNA MER1_type 13 196 0 234 0 0 0 chr15 49142375 49142401 -36553353 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 418 181 35 9 chr15 49143462 49143578 -36552176 - MER113 DNA MER1_type? -401 120 2 208 277 69 50 chr15 49145011 49145112 -36550642 - MIR SINE MIR -139 123 21 2748 171 47 34 chr15 49146034 49146652 -36549102 + L1MB8 LINE L1 5551 6176 -2 2563 52 0 0 chr15 49147016 49147307 -36548447 - AluY SINE Alu -20 291 1 2905 150 45 36 chr15 49148886 49149560 -36546194 + L1 LINE L1 2916 3595 -2551 1327 137 44 40 chr15 49149561 49149810 -36545944 - THE1B LTR MaLR 0 364 115 922 204 30 67 chr15 49149912 49150241 -36545513 + L1ME2 LINE L1 5833 6149 -15 1892 141 3 3 chr15 49150244 49150548 -36545206 + AluSx SINE Alu 1 304 0 543 308 108 26 chr15 49150637 49151173 -36544581 + L1MC4a LINE L1 5270 5849 -1959 24 0 0 0 chr15 49151393 49151417 -36544337 + AT_rich Low_complexity Low_complexity 1 24 0 2203 128 0 10 chr15 49151540 49151846 -36543908 - AluSx SINE Alu -9 303 1 199 219 0 0 chr15 49151883 49151924 -36543830 - MIR SINE MIR -58 204 164 289 273 0 15 chr15 49151946 49152012 -36543742 + L2 LINE L2 3240 3304 -9 1744 138 0 68 chr15 49152168 49152464 -36543290 + AluJb SINE Alu 3 278 -34 234 0 0 0 chr15 49152470 49152496 -36543258 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1861 141 0 4 chr15 49153130 49153400 -36542354 + AluJo SINE Alu 33 301 -11 237 335 40 33 chr15 49154145 49154297 -36541457 - MIR SINE MIR -71 191 39 182 241 130 0 chr15 49154593 49154647 -36541107 + MIR SINE MIR 40 100 -108 22 0 0 0 chr15 49156222 49156244 -36539510 + AT_rich Low_complexity Low_complexity 1 22 0 407 258 72 0 chr15 49156362 49156459 -36539295 + MER5A DNA MER1_type 9 112 -77 226 146 24 0 chr15 49156947 49156988 -36538766 + CT-rich Low_complexity Low_complexity 2 43 0 279 0 0 0 chr15 49157250 49157281 -36538473 + (TG)n Simple_repeat Simple_repeat 1 31 0 222 37 0 0 chr15 49157280 49157307 -36538447 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 315 248 92 46 chr15 49157903 49158012 -36537742 + MER5A DNA MER1_type 26 139 -39 324 295 68 20 chr15 49158447 49158562 -36537192 + MIR SINE MIR 9 128 -80 313 314 136 7 chr15 49159876 49160016 -36535738 - MIR3 SINE MIR -2 206 49 437 310 23 41 chr15 49160347 49160518 -36535236 - MIR3 SINE MIR -21 187 20 216 209 224 30 chr15 49161293 49161360 -36534394 + L2 LINE L2 3193 3272 0 543 302 77 78 chr15 49162601 49163187 -36532567 + MLT1K LTR MaLR 2 586 -2 204 271 68 0 chr15 49163189 49163248 -36532506 - L2 LINE L2 -213 3059 2997 1312 222 44 33 chr15 49163248 49163395 -36532359 + MLT1A1 LTR MaLR 1 145 -220 2072 124 0 24 chr15 49163395 49163693 -36532061 + AluJo SINE Alu 11 301 -11 1312 222 44 33 chr15 49163693 49163905 -36531849 + MLT1A1 LTR MaLR 145 364 -1 588 277 8 0 chr15 49164184 49164314 -36531440 - MIR3 SINE MIR -32 176 46 2331 210 70 32 chr15 49164392 49164993 -36530761 - MLT1E3 LTR MaLR 0 624 1 184 262 48 0 chr15 49166545 49166587 -36529167 - L2 LINE L2 -13 3300 3257 400 293 45 0 chr15 49166682 49166815 -36528939 - MIR SINE MIR -99 163 25 353 316 48 54 chr15 49166901 49167069 -36528685 + MIR SINE MIR 80 246 -16 378 298 107 0 chr15 49167860 49168038 -36527716 + MER117 DNA MER1_type 1 197 0 376 197 96 157 chr15 49168237 49168359 -36527395 - MER5B DNA MER1_type -3 175 66 2304 128 0 0 chr15 49168359 49168672 -36527082 - AluSq SINE Alu 0 313 1 376 197 96 157 chr15 49168672 49168727 -36527027 - MER5B DNA MER1_type -112 66 9 339 257 101 9 chr15 49169695 49169804 -36525950 + MER5A DNA MER1_type 8 126 -63 233 231 128 13 chr15 49170507 49170585 -36525169 - MIR SINE MIR -109 153 67 284 200 40 27 chr15 49171288 49171363 -36524391 - MER5A DNA MER1_type -103 86 11 237 283 50 0 chr15 49172259 49172319 -36523435 - MIR SINE MIR -33 229 167 355 307 80 36 chr15 49172348 49172573 -36523181 + MIR SINE MIR 28 262 0 294 315 54 39 chr15 49172561 49172691 -36523063 - MIR SINE MIR -103 159 28 * 591 210 161 0 chr15 49172712 49172874 -36522880 + MER5A DNA MER1_type 1 188 -1 2474 65 0 10 chr15 49172954 49173283 -36522471 + AluY SINE Alu 1 311 0 238 267 67 0 chr15 49173834 49173909 -36521845 + MER96 DNA MER1_type? 4 83 -92 284 302 47 0 chr15 49174753 49174859 -36520895 + MIR3 SINE MIR 95 205 -3 671 249 131 18 chr15 49174970 49175191 -36520563 - MLT1J2 LTR MaLR 0 450 205 339 331 79 7 chr15 49175481 49175620 -36520134 + MIR SINE MIR 109 257 -5 208 254 32 0 chr15 49176634 49176697 -36519057 + CT-rich Low_complexity Low_complexity 6 70 0 417 328 15 8 chr15 49176832 49176963 -36518791 + MIR SINE MIR 20 151 -111 272 299 48 84 chr15 49177280 49177447 -36518307 + MER117 DNA MER1_type 4 164 -33 198 241 60 112 chr15 49178203 49178319 -36517435 + L2 LINE L2 2937 3046 -226 907 230 129 14 chr15 49178852 49179139 -36516615 - L1ME3 LINE L1 -7 6155 5836 663 282 150 35 chr15 49179194 49179620 -36516134 + MLT1J LTR MaLR 29 503 -8 891 301 134 13 chr15 49179636 49180154 -36515600 + L2 LINE L2 2731 3313 0 943 254 114 10 chr15 49180462 49180888 -36514866 - MLT1J LTR MaLR -2 509 4 510 245 102 0 chr15 49182096 49182243 -36513511 + MIR SINE MIR 35 196 -66 550 238 49 10 chr15 49182298 49182493 -36513261 + LTR33A LTR ERVL 1 205 -316 350 250 46 9 chr15 49182626 49182734 -36513020 + LTR33A LTR ERVL 411 522 -1 1801 174 42 0 chr15 49182961 49183294 -36512460 + MER7A DNA MER2_type 2 346 0 189 234 47 16 chr15 49183555 49183590 -36512164 - MIR SINE MIR -108 154 122 2343 164 31 7 chr15 49183590 49184006 -36511748 - MSTB LTR MaLR 0 426 1 189 234 47 16 chr15 49184006 49184034 -36511720 - MIR SINE MIR -140 122 89 328 250 35 69 chr15 49184358 49184474 -36511280 - MER91C DNA MER1_type 0 140 29 223 291 82 38 chr15 49184695 49184853 -36510901 - MIR SINE MIR -70 192 28 677 238 15 78 chr15 49185525 49185684 -36510070 - MIR SINE MIR -62 200 54 2266 103 0 0 chr15 49185684 49185997 -36509757 + AluSx SINE Alu 1 313 0 677 238 15 78 chr15 49185997 49186042 -36509712 - MIR SINE MIR -208 54 8 505 301 77 4 chr15 49186526 49186735 -36509019 - MIR SINE MIR -26 236 16 1993 198 77 11 chr15 49186861 49187331 -36508423 + MLT1D LTR MaLR 5 505 0 268 282 27 64 chr15 49187461 49187571 -36508183 - MIR SINE MIR -69 139 34 192 97 0 0 chr15 49187661 49187692 -36508062 + (TG)n Simple_repeat Simple_repeat 2 32 0 772 239 54 108 chr15 49187880 49188249 -36507505 + MLT1J2 LTR MaLR 100 448 -2 384 270 66 0 chr15 49188952 49189089 -36506665 + MER104 DNA Tc2 1 146 -34 2337 109 3 0 chr15 49189126 49189430 -36506324 - AluSq SINE Alu -8 305 1 232 204 23 0 chr15 49189507 49189551 -36506203 + MLT1J2 LTR MaLR 280 324 -126 197 231 19 0 chr15 49189727 49189779 -36505975 + L2 LINE L2 3257 3309 -4 4325 114 154 21 chr15 49190020 49190891 -36504863 - MER52C LTR ERV1 0 1278 1 2167 140 25 0 chr15 49191089 49191446 -36504308 - MER47A DNA MER2_type 0 366 1 249 180 0 0 chr15 49191479 49191529 -36504225 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 186 103 0 0 chr15 49192274 49192303 -36503451 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 334 262 84 0 chr15 49193111 49193218 -36502536 + MIR SINE MIR 75 190 -72 396 0 0 0 chr15 49193432 49193476 -36502278 + (CA)n Simple_repeat Simple_repeat 1 44 0 306 264 11 0 chr15 49194639 49194726 -36501028 + (TG)n Simple_repeat Simple_repeat 1 88 0 358 333 200 0 chr15 49194802 49194997 -36500757 - MIR SINE MIR -6 256 23 422 316 126 5 chr15 49195093 49195299 -36500455 - MIR SINE MIR -12 250 20 499 267 38 8 chr15 49195428 49195559 -36500195 - MLT1L LTR MaLR -131 484 350 372 262 144 32 chr15 49195635 49195822 -36499932 + HAL1b LINE L1 1140 1347 -1 206 365 29 10 chr15 49195861 49195965 -36499789 + L2 LINE L2 2720 2825 -489 755 214 118 16 chr15 49196214 49196401 -36499353 - MER63A DNA MER1_type 0 210 5 328 256 133 0 chr15 49197277 49197367 -36498387 + MIR SINE MIR 45 146 -62 346 260 98 16 chr15 49197951 49198074 -36497680 - MIR SINE MIR -49 213 81 992 267 72 31 chr15 49198144 49198503 -36497251 + MLT1A2 LTR MaLR 1 374 0 270 306 61 39 chr15 49199552 49199732 -36496022 - L2 LINE L2 -22 3291 3108 1885 169 0 10 chr15 49200361 49200657 -36495097 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr15 49202587 49202608 -36493146 + AT_rich Low_complexity Low_complexity 1 21 0 518 250 49 14 chr15 49203077 49203221 -36492533 + MIR SINE MIR 34 182 -80 187 305 134 0 chr15 49204105 49204187 -36491567 + MIR SINE MIR 90 182 -80 29 28 0 0 chr15 49204438 49204474 -36491280 + AT_rich Low_complexity Low_complexity 1 36 0 2078 146 0 0 chr15 49204925 49205227 -36490527 + AluJb SINE Alu 1 302 -10 349 273 182 8 chr15 49205548 49205680 -36490074 + MIR SINE MIR 58 212 -50 462 320 126 26 chr15 49207363 49207744 -36488010 + L2 LINE L2 2836 3254 -18 276 137 0 0 chr15 49207749 49207800 -36487954 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 725 163 6 0 chr15 49207801 49207979 -36487775 + GA-rich Low_complexity Low_complexity 2 180 0 690 197 0 0 chr15 49207995 49208299 -36487455 + (TGGA)n Simple_repeat Simple_repeat 1 304 0 345 242 0 0 chr15 49208314 49208442 -36487312 + (TGGA)n Simple_repeat Simple_repeat 4 131 0 693 195 0 0 chr15 49208546 49208773 -36486981 + (TGGA)n Simple_repeat Simple_repeat 1 227 0 198 191 0 0 chr15 49208809 49208856 -36486898 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 656 192 11 0 chr15 49208873 49209050 -36486704 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 222 331 62 25 chr15 49210337 49210497 -36485257 + MIR SINE MIR 81 246 -16 401 327 100 9 chr15 49210549 49210769 -36484985 + MIR SINE MIR 23 262 0 1757 142 10 50 chr15 49211364 49211666 -36484088 - AluJo SINE Alu -22 290 1 2045 123 0 0 chr15 49211678 49211947 -36483807 - AluSx SINE Alu -9 303 35 1245 165 0 13 chr15 49212010 49212246 -36483508 - L1MB5 LINE L1 0 6174 5942 257 137 39 0 chr15 49212246 49212297 -36483457 + C-rich Low_complexity Low_complexity 5 57 0 364 82 33 0 chr15 49212303 49212364 -36483390 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 631 167 8 23 chr15 49212370 49212502 -36483252 - L1MB5 LINE L1 -237 5941 5812 578 200 21 21 chr15 49212495 49212635 -36483119 - L1MB5 LINE L1 -310 5864 5725 * 341 222 10 61 chr15 49212703 49212802 -36482952 - MER96 DNA MER1_type? 0 175 82 315 314 48 80 chr15 49213031 49213190 -36482564 - L1MC4 LINE L1 -219 7823 7678 1994 139 0 7 chr15 49213190 49213500 -36482254 - AluSq SINE Alu 0 308 1 315 314 48 80 chr15 49213500 49213676 -36482078 - L1MC4 LINE L1 -364 7678 7498 29 47 0 0 chr15 49213676 49213719 -36482035 + AT_rich Low_complexity Low_complexity 1 43 0 480 129 35 0 chr15 49213757 49213842 -36481912 + L1MB5 LINE L1 6075 6162 -12 476 184 0 0 chr15 49213885 49213972 -36481782 - FLAM_C SINE Alu -35 108 22 1938 293 41 39 chr15 49213978 49214536 -36481218 - L1MC5 LINE L1 -547 7495 7014 2085 108 4 4 chr15 49214536 49214837 -36480917 - AluSc SINE Alu 0 301 1 1938 293 41 39 chr15 49214837 49215154 -36480600 - L1MC5 LINE L1 -1028 7014 6699 342 0 0 0 chr15 49215437 49215475 -36480279 + (TG)n Simple_repeat Simple_repeat 2 39 0 340 223 0 107 chr15 49215714 49215817 -36479937 - L1MC5 LINE L1 -1798 6010 5919 994 249 46 0 chr15 49215819 49216080 -36479674 + L1ME2 LINE L1 5891 6163 -1 627 309 59 21 chr15 49216099 49216474 -36479280 + L1MC/D LINE L1 5266 5654 -2154 225 250 120 37 chr15 49216496 49216604 -36479150 + L1MC/D LINE L1 5808 5924 -1884 336 105 0 105 chr15 49216781 49216857 -36478897 + MADE1 DNA Mariner 1 68 -12 257 152 0 0 chr15 49216881 49216927 -36478827 + MADE1 DNA Mariner 35 80 0 1776 172 3 19 chr15 49216944 49217252 -36478502 + AluJb SINE Alu 1 303 -9 854 215 0 0 chr15 49217532 49217681 -36478073 - AluJb SINE Alu -32 280 132 1087 255 53 3 chr15 49217750 49218052 -36477702 - MER46C DNA MER2_type -9 329 13 294 320 41 34 chr15 49218094 49218241 -36477513 - Tigger8 DNA MER2_type -186 480 333 281 148 49 33 chr15 49219006 49219067 -36476687 + L1MEd LINE L1 570 631 -5488 660 25 0 0 chr15 49219121 49219201 -36476553 + AluSg SINE Alu 6 85 -225 670 261 47 70 chr15 49219208 49219261 -36476493 + L1MEd LINE L1 725 778 -5341 754 219 114 25 chr15 49219261 49219462 -36476292 - MER20 DNA MER1_type 0 219 1 670 261 47 70 chr15 49219462 49219895 -36475859 + L1MEd LINE L1 778 1200 -4919 2238 125 13 0 chr15 49219990 49220293 -36475461 + AluSx SINE Alu 5 311 -1 1323 189 9 0 chr15 49220768 49220990 -36474764 + MER58A DNA MER1_type 1 224 0 599 316 82 12 chr15 49221096 49221340 -36474414 - MIR SINE MIR 0 262 2 333 0 0 0 chr15 49221689 49221726 -36474028 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 286 20 0 chr15 49222625 49222674 -36473080 - L2 LINE L2 -12 3301 3252 438 300 176 22 chr15 49222753 49222980 -36472774 + MIR SINE MIR 1 262 0 296 241 101 0 chr15 49222987 49223066 -36472688 - MIR SINE MIR -108 154 68 954 183 6 0 chr15 49223070 49223245 -36472509 + AluJb SINE Alu 132 307 -5 280 377 52 19 chr15 49224218 49224372 -36471382 + L3 LINE CR1 1414 1572 -5 595 214 103 0 chr15 49225292 49225437 -36470317 - MIR SINE MIR -55 207 48 192 305 191 0 chr15 49226551 49226682 -36469072 - MIR SINE MIR -54 208 53 344 237 93 0 chr15 49226741 49226838 -36468916 - MIR SINE MIR -37 225 120 199 206 0 22 chr15 49227431 49227523 -36468231 + GA-rich Low_complexity Low_complexity 1 90 0 517 290 21 16 chr15 49229575 49229804 -36465950 + MIR SINE MIR 35 262 0 21 0 0 0 chr15 49229867 49229888 -36465866 + AT_rich Low_complexity Low_complexity 1 21 0 249 159 0 0 chr15 49230472 49230516 -36465238 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 2609 171 40 18 chr15 49230525 49230672 -36465082 + MER74A LTR ERVL 1 143 -415 1342 165 61 132 chr15 49230672 49231065 -36464689 - MLT1A1 LTR MaLR 0 365 1 2609 171 40 18 chr15 49231065 49231460 -36464294 + MER74A LTR ERVL 143 555 -3 237 198 28 28 chr15 49231464 49231570 -36464184 + GA-rich Low_complexity Low_complexity 2 107 0 338 261 0 11 chr15 49231733 49231821 -36463933 + MIR SINE MIR 31 117 -145 429 254 77 8 chr15 49234345 49234475 -36461279 - MIR SINE MIR -113 149 11 359 286 124 85 chr15 49234543 49235099 -36460655 - L2 LINE L2 -68 3204 2618 201 281 31 0 chr15 49235246 49235310 -36460444 - MIR SINE MIR -66 142 77 238 222 12 12 chr15 49235898 49235979 -36459775 + C-rich Low_complexity Low_complexity 1 81 0 195 216 189 14 chr15 49236306 49236380 -36459374 - MIR SINE MIR -78 184 98 414 154 0 0 chr15 49236443 49236521 -36459233 + GA-rich Low_complexity Low_complexity 1 78 0 261 190 17 17 chr15 49237570 49237686 -36458068 + (CAGAGA)n Simple_repeat Simple_repeat 4 119 0 392 253 70 57 chr15 49237973 49238160 -36457594 + LTR33 LTR ERVL 34 210 -311 398 286 78 10 chr15 49238372 49238578 -36457176 + LTR33 LTR ERVL 295 514 -7 501 291 23 4 chr15 49238644 49238832 -36456922 + MIR SINE MIR 3 192 -67 202 306 16 0 chr15 49239369 49239431 -36456323 + MIR SINE MIR 2 64 -198 1975 154 0 0 chr15 49239562 49239867 -36455887 - AluSx SINE Alu -5 307 3 2161 100 3 0 chr15 49239878 49240167 -36455587 - AluSx SINE Alu -22 290 1 318 157 0 0 chr15 49240227 49240278 -36455476 - L2 LINE L2 -1 3312 3262 965 340 121 30 chr15 49240288 49240374 -36455380 - L2 LINE L2 -475 2839 2762 2222 89 14 0 chr15 49240374 49240666 -36455088 - AluSq SINE Alu -17 296 1 2249 99 3 0 chr15 49240666 49240968 -36454786 - AluSq SINE Alu -10 303 1 965 340 121 30 chr15 49240968 49241782 -36453972 - L2 LINE L2 -551 2763 1856 715 291 40 29 chr15 49241834 49242122 -36453632 + MLT1I LTR MaLR 1 289 -120 189 309 31 31 chr15 49242510 49242607 -36453147 + MIR SINE MIR 18 114 -148 * 202 371 34 0 chr15 49242594 49242683 -36453071 + L2 LINE L2 2689 2780 -534 728 257 21 5 chr15 49242684 49242871 -36452883 - MER117 DNA MER1_type -6 191 2 216 358 70 23 chr15 49242897 49243112 -36452642 + L2 LINE L2 2809 3033 -239 254 327 150 0 chr15 49243377 49243490 -36452264 + MIR SINE MIR 126 255 -7 313 297 16 47 chr15 49243588 49243716 -36452038 - L2 LINE L2 -13 3259 3136 370 233 108 31 chr15 49243827 49243956 -36451798 - MLT1I LTR MaLR -6 403 265 3386 139 11 19 chr15 49244128 49244194 -36451560 + L1MA6 LINE L1 5737 5802 -498 402 21 0 0 chr15 49244194 49244241 -36451513 + (CA)n Simple_repeat Simple_repeat 2 48 0 3386 139 11 19 chr15 49244241 49244743 -36451011 + L1MA6 LINE L1 5802 6300 0 268 271 88 55 chr15 49246423 49246602 -36449152 - MIR SINE MIR -62 146 9 217 304 52 17 chr15 49247130 49247245 -36448509 - MIR3 SINE MIR -52 156 38 28 61 0 0 chr15 49247363 49247412 -36448342 + AT_rich Low_complexity Low_complexity 1 49 0 435 219 226 7 chr15 49247510 49247665 -36448089 + MER53 DNA DNA 1 189 0 219 326 61 22 chr15 49247831 49248012 -36447742 - L2 LINE L2 -616 2698 2511 319 302 39 8 chr15 49248424 49248553 -36447201 - L3b LINE CR1 -175 1408 1276 251 182 55 0 chr15 49248932 49248987 -36446767 - MIR SINE MIR -109 153 96 403 281 157 7 chr15 49249479 49249632 -36446122 - MER5B DNA MER1_type 0 178 3 220 259 0 0 chr15 49249632 49249688 -36446066 - MIR3 SINE MIR -47 161 106 482 299 6 45 chr15 49250226 49250383 -36445371 + MIR3 SINE MIR 10 160 -48 265 250 47 78 chr15 49251173 49251301 -36444453 - MIR SINE MIR -117 145 22 627 274 118 5 chr15 49252042 49252254 -36443500 + MIR SINE MIR 20 255 -7 518 335 32 0 chr15 49252306 49252494 -36443260 + MIR3 SINE MIR 4 197 -11 499 269 81 21 chr15 49252918 49253104 -36442650 - MIR SINE MIR -10 252 56 185 340 39 0 chr15 49253094 49253197 -36442557 - L2 LINE L2 -147 3125 3019 * 481 197 129 27 chr15 49253221 49253368 -36442386 - MIR SINE MIR -12 250 89 637 263 137 5 chr15 49254337 49254542 -36441212 - MIR SINE MIR -14 248 17 420 304 109 0 chr15 49255106 49255244 -36440510 + MER117 DNA MER1_type 1 153 -44 397 348 100 9 chr15 49255600 49255830 -36439924 - MIR SINE MIR -6 256 6 262 338 90 14 chr15 49255869 49256014 -36439740 + L2 LINE L2 3154 3309 -4 253 291 122 27 chr15 49256676 49256824 -36438930 + L2 LINE L2 3012 3173 -99 346 333 81 21 chr15 49257342 49257528 -36438226 + MIR SINE MIR 20 216 -46 433 289 61 48 chr15 49258236 49258464 -36437290 - MIR SINE MIR -20 242 12 271 377 99 0 chr15 49258721 49258912 -36436842 + MIR SINE MIR 47 256 -6 816 96 15 52 chr15 49259566 49259702 -36436052 + FLAM_C SINE Alu 3 133 0 698 186 93 6 chr15 49260122 49260283 -36435471 + MIR SINE MIR 29 203 -59 212 233 50 33 chr15 49260684 49260744 -36435010 + MIR3 SINE MIR 99 159 -49 412 253 77 0 chr15 49261658 49261783 -36433971 - MIR SINE MIR -65 143 11 223 231 0 90 chr15 49261974 49262052 -36433702 - MIR SINE MIR -115 147 77 217 164 91 0 chr15 49262412 49262467 -36433287 + L2 LINE L2 3254 3313 0 323 350 18 18 chr15 49262669 49262832 -36432922 + MIR3 SINE MIR 25 187 -21 254 238 119 24 chr15 49263059 49263143 -36432611 + MIR SINE MIR 58 149 -59 2984 192 74 41 chr15 49265063 49265767 -36429987 + LTR8A LTR ERV1 1 727 0 2000 133 0 34 chr15 49266163 49266486 -36429268 + AluJb SINE Alu 1 312 0 324 316 125 0 chr15 49266629 49266797 -36428957 - MIR SINE MIR -6 256 68 215 333 0 0 chr15 49267298 49267364 -36428390 - L2 LINE L2 -1 3271 3206 243 254 17 0 chr15 49267367 49267426 -36428328 + MER91B DNA MER1_type 4 63 -127 237 200 33 33 chr15 49267457 49267517 -36428237 + MIR SINE MIR 34 93 -115 210 300 28 83 chr15 49267681 49267861 -36427893 - L2 LINE L2 -189 3083 2914 407 331 70 6 chr15 49268008 49268165 -36427589 + MIR3 SINE MIR 36 202 -6 543 311 15 78 chr15 49268753 49269023 -36426731 + MIR SINE MIR 2 254 -8 4952 181 18 17 chr15 49269037 49270095 -36425659 + L1 LINE L1 3599 4657 -1489 6201 111 3 28 chr15 49270095 49271446 -36424308 + L1PA16 LINE L1 4838 6166 0 308 150 75 0 chr15 49273733 49273853 -36421901 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 2225 100 75 31 chr15 49273856 49274205 -36421549 + THE1B LTR MaLR 1 364 0 301 204 75 65 chr15 49274547 49274640 -36421114 - L1ME4a LINE L1 -60 6061 5968 1975 142 0 66 chr15 49274726 49274878 -36420876 + AluJb SINE Alu 1 121 -191 369 0 0 0 chr15 49274878 49274919 -36420835 + (CA)n Simple_repeat Simple_repeat 2 42 0 1975 142 0 66 chr15 49274919 49275098 -36420656 + AluJb SINE Alu 121 310 -2 469 237 99 20 chr15 49275107 49275259 -36420495 - Charlie8 DNA MER1_type -2195 222 59 205 333 0 0 chr15 49275875 49275965 -36419789 + (CA)n Simple_repeat Simple_repeat 1 90 0 2191 125 7 3 chr15 49276702 49277005 -36418749 - AluSx SINE Alu -8 304 1 385 310 150 0 chr15 49277388 49277575 -36418179 - MIR SINE MIR -12 250 36 384 22 0 0 chr15 49278028 49278073 -36417681 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 0 0 0 chr15 49278590 49278611 -36417143 + (CA)n Simple_repeat Simple_repeat 1 21 0 2054 174 23 0 chr15 49278719 49279110 -36416644 - L1MB5 LINE L1 -203 5971 5572 710 238 30 18 chr15 49280635 49280799 -36414955 - MIR SINE MIR -4 258 93 209 242 38 167 chr15 49281258 49281444 -36414310 - L2 LINE L2 -86 3186 3025 215 279 16 0 chr15 49281731 49281792 -36413962 - L2 LINE L2 -61 3211 3150 2096 144 41 24 chr15 49281817 49282186 -36413568 - THE1C LTR MaLR 0 375 1 919 200 16 21 chr15 49282385 49282575 -36413179 + MER5A DNA MER1_type 1 189 0 702 264 113 25 chr15 49282752 49282991 -36412763 - MIR SINE MIR -2 260 1 392 230 7 108 chr15 49283872 49283940 -36411814 - MIR SINE MIR -66 196 147 2944 79 0 8 chr15 49283940 49284320 -36411434 + MER51B LTR ERV1 1 377 0 392 230 7 108 chr15 49284320 49284390 -36411364 - MIR SINE MIR -115 147 72 195 294 88 20 chr15 49284796 49284898 -36410856 - L3 LINE CR1 -222 1355 1247 244 111 0 0 chr15 49286395 49286431 -36409323 + AluSx SINE Alu 1 36 -265 839 103 0 0 chr15 49286436 49286571 -36409183 - AluY SINE Alu 0 308 174 2029 109 7 7 chr15 49286571 49286845 -36408909 + AluSx SINE Alu 33 306 -6 396 227 52 10 chr15 49287464 49287561 -36408193 - L2 LINE L2 0 3313 3213 206 321 121 36 chr15 49287824 49288048 -36407706 - L2 LINE L2 -471 2843 2601 206 368 28 0 chr15 49288186 49288292 -36407462 - L2 LINE L2 -1 3312 3204 688 153 7 10 chr15 49288869 49289179 -36406575 + (CA)n Simple_repeat Simple_repeat 1 308 0 308 250 87 0 chr15 49289500 49289592 -36406162 - MIR SINE MIR -126 136 37 492 153 0 0 chr15 49290027 49290112 -36405642 + GA-rich Low_complexity Low_complexity 2 86 0 287 250 175 0 chr15 49290345 49290425 -36405329 - MIR SINE MIR -83 125 32 596 231 6 0 chr15 49293018 49293174 -36402580 + GA-rich Low_complexity Low_complexity 3 159 0 303 54 0 0 chr15 49293174 49293211 -36402543 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 310 370 7 15 chr15 49293672 49293807 -36401947 + L1MEd LINE L1 927 1060 -5059 396 111 0 0 chr15 49294080 49294143 -36401611 + (CA)n Simple_repeat Simple_repeat 2 64 0 276 255 43 43 chr15 49294162 49294256 -36401498 - MIR3 SINE MIR -24 184 91 600 307 54 16 chr15 49294709 49294952 -36400802 - MIR SINE MIR -9 253 1 240 220 60 80 chr15 49295094 49295194 -36400560 - L2 LINE L2 -219 3053 2956 908 211 82 42 chr15 49296098 49296322 -36399432 - MIR SINE MIR -15 247 21 470 366 40 0 chr15 49296448 49296623 -36399131 + L3 LINE CR1 1287 1468 -109 924 243 110 23 chr15 49297380 49297519 -36398235 + LTR16A LTR ERVL 66 191 -259 2761 182 42 18 chr15 49297519 49298068 -36397686 + MER68 LTR ERV1 1 562 0 924 243 110 23 chr15 49298068 49298282 -36397472 + LTR16A LTR ERVL 191 450 0 468 208 195 25 chr15 49298320 49298479 -36397275 - MIR SINE MIR -52 210 25 429 233 0 43 chr15 49299866 49299982 -36395772 - MIR SINE MIR -96 166 56 238 318 12 12 chr15 49300312 49300397 -36395357 - MIR3 SINE MIR -9 199 115 1328 245 57 10 chr15 49300849 49301232 -36394522 + L1MEc LINE L1 424 824 -5572 * 1883 222 26 6 chr15 49301226 49301695 -36394059 + L1MB7 LINE L1 4084 4561 -1585 1185 178 33 0 chr15 49301696 49301910 -36393844 + Tigger4(Zombi) DNA MER2_type 3 223 -2508 2131 91 7 3 chr15 49301913 49302220 -36393534 + Tigger4(Zombi) DNA MER2_type 2424 2731 0 5106 158 29 14 chr15 49302220 49303786 -36391968 + L1MB7 LINE L1 4559 6152 -32 1100 214 4 4 chr15 49303830 49304092 -36391662 + L1MEc LINE L1 810 1071 -5325 1462 261 53 41 chr15 49304613 49305275 -36390479 + L1MEc LINE L1 1087 1756 -4640 300 205 121 0 chr15 49305318 49305401 -36390353 + L1MEc LINE L1 1003 1095 -5301 4171 178 85 37 chr15 49305755 49305796 -36389958 + L1MC4a LINE L1 6662 6700 -1108 2612 101 8 13 chr15 49305796 49306173 -36389581 + THE1C LTR MaLR 1 375 0 4171 178 85 37 chr15 49306173 49307175 -36388579 + L1MC4a LINE L1 6700 7755 -53 2035 146 16 3 chr15 49307201 49307509 -36388245 - AluJb SINE Alu 0 312 1 1817 210 54 61 chr15 49307522 49307816 -36387938 + L1MEc LINE L1 1863 2157 -4058 2397 71 0 34 chr15 49307816 49308099 -36387655 + AluY SINE Alu 1 273 -38 198 0 0 0 chr15 49308099 49308121 -36387633 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2397 71 0 34 chr15 49308121 49308159 -36387595 + AluY SINE Alu 273 311 0 1817 210 54 61 chr15 49308159 49308793 -36386961 + L1MEc LINE L1 2157 2751 -3464 3035 172 42 29 chr15 49308793 49309176 -36386578 - MER7C DNA MER2_type -2426 602 207 1909 141 31 10 chr15 49309176 49309466 -36386288 - AluJb SINE Alu -16 296 1 3035 172 42 29 chr15 49309466 49309676 -36386078 - MER7C DNA MER2_type -2821 207 1 1817 210 54 61 chr15 49309676 49309714 -36386040 + L1MEc LINE L1 2751 2788 -3427 326 218 0 23 chr15 49309778 49309865 -36385889 + L1MEc LINE L1 3104 3188 -3027 259 349 75 19 chr15 49310013 49310119 -36385635 - L2 LINE L2 -43 3229 3118 903 279 65 25 chr15 49310200 49310555 -36385199 - MLT1J1 LTR MaLR -71 375 7 659 329 71 44 chr15 49310578 49311025 -36384729 - L2 LINE L2 -195 3077 2623 1533 153 113 62 chr15 49311025 49311230 -36384524 - MSTC LTR MaLR 0 428 235 2269 102 17 0 chr15 49311230 49311525 -36384229 - AluSc SINE Alu -9 300 1 1533 153 113 62 chr15 49311525 49311648 -36384106 - MSTC LTR MaLR -193 235 74 2223 106 10 7 chr15 49311648 49311950 -36383804 - AluSp SINE Alu -10 303 1 1533 153 113 62 chr15 49311950 49312020 -36383734 - MSTC LTR MaLR -354 74 9 1529 345 133 27 chr15 49312027 49313832 -36381922 - L2 LINE L2 -687 2627 630 1338 281 81 12 chr15 49314080 49314490 -36381264 - LTR16A LTR ERVL -6 444 7 574 262 43 30 chr15 49314657 49314821 -36380933 + MIR3 SINE MIR 7 172 -36 331 210 70 49 chr15 49316426 49316569 -36379185 + LTR67 LTR ERVL 338 483 -74 300 260 0 0 chr15 49316618 49316695 -36379059 + GA-rich Low_complexity Low_complexity 2 78 0 582 148 0 75 chr15 49316698 49317045 -36378709 + (CAGAGA)n Simple_repeat Simple_repeat 1 320 0 325 94 41 58 chr15 49317339 49317510 -36378244 + (CA)n Simple_repeat Simple_repeat 1 168 0 369 107 36 71 chr15 49317566 49317825 -36377929 + (CA)n Simple_repeat Simple_repeat 1 249 0 189 51 51 51 chr15 49317863 49317922 -36377832 + (CA)n Simple_repeat Simple_repeat 1 59 0 376 319 132 43 chr15 49318802 49318974 -36376780 + MIR SINE MIR 7 207 -55 1427 233 22 47 chr15 49318974 49319381 -36376373 - MLT2C1 LTR ERVL 0 397 1 376 319 132 43 chr15 49319381 49319443 -36376311 + MIR SINE MIR 207 262 0 294 284 304 0 chr15 49319824 49319972 -36375782 + MER91A DNA MER1_type 1 193 -3 347 261 12 36 chr15 49320138 49320303 -36375451 + MER41B LTR ERV1 275 435 -200 585 270 21 23 chr15 49320979 49321172 -36374582 + MIR SINE MIR 24 216 -46 2228 123 0 13 chr15 49321172 49321488 -36374266 + AluSx SINE Alu 1 312 0 585 270 21 23 chr15 49321488 49321508 -36374246 + MIR SINE MIR 216 235 -27 1076 210 54 0 chr15 49322143 49322348 -36373406 - MER20 DNA MER1_type -3 216 1 520 176 0 0 chr15 49322859 49322950 -36372804 - AluJ/FRAM SINE Alu -7 305 215 769 261 58 5 chr15 49323374 49323581 -36372173 + MIR SINE MIR 31 248 -14 495 286 132 35 chr15 49323626 49323997 -36371757 - L1ME LINE L1 -321 5800 5394 285 29 0 0 chr15 49324040 49324074 -36371680 + (TG)n Simple_repeat Simple_repeat 2 35 0 301 291 51 34 chr15 49324074 49324311 -36371443 - L1ME LINE L1 -818 5328 5088 2480 67 3 3 chr15 49324316 49324613 -36371141 + AluSq SINE Alu 1 297 -16 219 69 0 0 chr15 49324642 49324671 -36371083 + (CA)n Simple_repeat Simple_repeat 2 30 0 217 296 122 10 chr15 49325426 49325524 -36370230 + MIR SINE MIR 21 129 -79 313 325 40 8 chr15 49325606 49325732 -36370022 - MIR SINE MIR -83 179 50 2233 104 0 7 chr15 49326036 49326333 -36369421 + AluSg SINE Alu 1 295 -15 1047 213 120 30 chr15 49326360 49326760 -36368994 - Zaphod DNA AcHobo -6 4025 3590 * 3236 190 120 21 chr15 49326757 49327582 -36368172 - Zaphod DNA AcHobo -3047 984 66 456 19 0 0 chr15 49327582 49327635 -36368119 + (TG)n Simple_repeat Simple_repeat 1 53 0 3236 190 120 21 chr15 49327635 49327682 -36368072 - Zaphod DNA AcHobo -3965 66 25 2842 156 29 24 chr15 49327732 49328276 -36367478 - MER68 LTR ERV1 -7 555 9 1977 162 3 0 chr15 49328746 49329048 -36366706 + AluSx SINE Alu 1 303 -9 2430 95 0 0 chr15 49329129 49329425 -36366329 - AluSc SINE Alu -13 296 1 706 266 0 10 chr15 49329702 49329909 -36365845 - MER113 DNA MER1_type? -282 239 35 323 241 0 0 chr15 49330624 49330682 -36365072 + L2 LINE L2 3245 3302 -11 1898 188 77 43 chr15 49330727 49331194 -36364560 + MLT1D LTR MaLR 7 489 -16 272 333 69 47 chr15 49331277 49331553 -36364201 - L2 LINE L2 -557 2757 2476 381 315 27 0 chr15 49332509 49332620 -36363134 - L2 LINE L2 -3 3310 3197 194 244 0 0 chr15 49332934 49332975 -36362779 - L2 LINE L2 -6 3266 3226 2255 88 91 24 chr15 49333034 49333375 -36362379 - THE1B LTR MaLR 0 364 1 187 306 42 28 chr15 49333481 49333553 -36362201 - MIR3 SINE MIR -133 75 3 455 330 48 11 chr15 49333599 49333787 -36361967 - MIR SINE MIR -48 214 20 217 277 0 0 chr15 49334937 49334984 -36360770 - L2 LINE L2 -7 3265 3219 615 271 89 25 chr15 49335025 49335228 -36360526 - MIR SINE MIR 0 262 47 184 234 62 62 chr15 49335717 49335781 -36359973 - L3 LINE CR1 -12 1565 1502 546 256 213 5 chr15 49335815 49336026 -36359728 - MIR SINE MIR -2 260 6 320 305 71 26 chr15 49336027 49336181 -36359573 - L3 LINE CR1 -60 1517 1357 2230 122 7 0 chr15 49336182 49336485 -36359269 - AluSx SINE Alu -7 305 1 481 177 0 0 chr15 49336485 49336564 -36359190 - MER5A DNA MER1_type -107 82 4 711 249 62 0 chr15 49336592 49336769 -36358985 + MER58A DNA MER1_type 37 224 0 185 279 16 98 chr15 49336770 49336892 -36358862 - L3 LINE CR1 -298 1279 1168 1803 154 3 39 chr15 49337576 49337881 -36357873 - AluSx SINE Alu -18 294 1 349 261 87 0 chr15 49337914 49338029 -36357725 + MER3 DNA MER1_type 85 209 0 200 139 0 23 chr15 49338520 49338563 -36357191 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 434 266 225 11 chr15 49339099 49339370 -36356384 + LTR16B LTR ERVL 134 462 -2 967 236 19 5 chr15 49340011 49340227 -36355527 - MER20 DNA MER1_type 0 219 1 472 63 0 0 chr15 49340582 49340645 -36355109 - L1PB4 LINE L1 -1 6155 6093 542 214 10 0 chr15 49340725 49340828 -36354926 - L2 LINE L2 0 3313 3210 194 290 0 16 chr15 49340882 49340944 -36354810 + MIR SINE MIR 177 237 -25 434 307 140 48 chr15 49341000 49341565 -36354189 - L2 LINE L2 -112 3160 2550 280 240 59 92 chr15 49342152 49342404 -36353350 + L1M4 LINE L1 2913 3149 -2997 2065 125 16 0 chr15 49342404 49342709 -36353045 + AluSx SINE Alu 1 310 -2 280 240 59 92 chr15 49342709 49342860 -36352894 + L1M4 LINE L1 3149 3303 -2843 596 277 83 60 chr15 49343930 49344316 -36351438 - MLT1J LTR MaLR -116 395 1 305 341 57 6 chr15 49344682 49344858 -36350896 - L2 LINE L2 -453 2861 2677 5164 136 32 33 chr15 49345191 49346728 -36349026 + pTR5 LTR ERV1 743 2438 0 1325 178 4 52 chr15 49346734 49347003 -36348751 + AluJb SINE Alu 22 277 -35 201 167 62 21 chr15 49347010 49347058 -36348696 - MIR SINE MIR -135 73 24 262 258 129 11 chr15 49348064 49348157 -36347597 + MIR SINE MIR 69 172 -90 332 294 108 74 chr15 49348768 49349032 -36346722 + L1MC4a LINE L1 5732 6010 -1798 1786 104 104 7 chr15 49349032 49349301 -36346453 + AluSq SINE Alu 1 295 -18 332 294 108 74 chr15 49349301 49349359 -36346395 + L1MC4a LINE L1 6010 6065 -1743 653 292 68 20 chr15 49350063 49350522 -36345232 - L1MEd LINE L1 -2980 3149 2669 * 914 133 0 0 chr15 49350521 49350664 -36345090 + L1PA13 LINE L1 5976 6118 -45 2443 117 11 22 chr15 49350664 49351032 -36344722 + THE1B LTR MaLR 1 364 0 10123 81 10 0 chr15 49351032 49352382 -36343372 + THE1B-int LTR MaLR 1 1363 -217 1551 245 94 80 chr15 49352924 49354154 -36341600 - L1MEd LINE L1 -4594 1716 432 381 341 19 107 chr15 49354210 49354621 -36341133 - L1MEd LINE L1 -5744 375 1 843 252 48 4 chr15 49354863 49355113 -36340641 - MIR SINE MIR -1 261 1 243 282 47 12 chr15 49355395 49355480 -36340274 - MIR SINE MIR -80 182 95 25 0 0 0 chr15 49356489 49356514 -36339240 + AT_rich Low_complexity Low_complexity 1 25 0 2164 132 7 0 chr15 49356535 49356838 -36338916 + AluSx SINE Alu 1 305 -7 202 223 53 106 chr15 49356880 49356974 -36338780 - MIR SINE MIR 0 262 174 619 232 108 5 chr15 49357027 49357221 -36338533 + MIR SINE MIR 46 259 -3 2823 201 24 8 chr15 49358344 49359469 -36336285 + L1MC/D LINE L1 4633 5778 -566 4011 152 44 44 chr15 49359788 49360172 -36335582 + L1MC1 LINE L1 5465 5848 -485 339 25 0 0 chr15 49360172 49360212 -36335542 + (CA)n Simple_repeat Simple_repeat 1 40 0 4011 152 44 44 chr15 49360212 49360224 -36335530 + L1MC1 LINE L1 5848 5859 -474 2227 115 0 0 chr15 49360224 49360512 -36335242 - AluSq SINE Alu -25 288 1 4011 152 44 44 chr15 49360512 49360970 -36334784 + L1MC1 LINE L1 5858 6320 -13 406 309 106 50 chr15 49361044 49361448 -36334306 + HERV16 LTR ERVL 360 786 -4210 932 319 18 9 chr15 49362980 49363318 -36332436 + HERV16 LTR ERVL 1690 2030 -2966 283 194 119 0 chr15 49363360 49363427 -36332327 + MIR SINE MIR 118 192 -70 310 228 41 108 chr15 49363466 49363614 -36332140 - L1MC4 LINE L1 -1336 6986 1976 347 314 79 7 chr15 49363860 49364000 -36331754 + MIR3 SINE MIR 31 180 -28 244 311 160 0 chr15 49366349 49366455 -36329299 - L2 LINE L2 -1171 2143 2021 2054 97 26 7 chr15 49366933 49367202 -36328552 - AluSx SINE Alu -1 311 38 879 295 134 7 chr15 49367306 49367767 -36327987 - L2 LINE L2 -1293 2021 1502 486 226 113 49 chr15 49368096 49368300 -36327454 + MIR SINE MIR 8 224 -38 183 315 27 41 chr15 49368300 49368373 -36327381 + MER5B DNA MER1_type 84 155 -23 182 255 0 0 chr15 49368437 49368484 -36327270 + L2 LINE L2 3267 3313 0 2353 82 0 26 chr15 49368584 49368887 -36326867 + AluSg SINE Alu 7 301 -9 2195 133 0 0 chr15 49368896 49369197 -36326557 + AluSx SINE Alu 6 306 -6 377 268 0 10 chr15 49369620 49369717 -36326037 + MIR SINE MIR 49 144 -118 566 273 50 25 chr15 49371046 49371328 -36324426 - L1ME LINE L1 -618 5544 5256 2257 110 0 0 chr15 49371438 49371729 -36324025 - AluSx SINE Alu -19 293 3 318 198 28 85 chr15 49371760 49371866 -36323888 - L1MC4 LINE L1 -1339 6703 6604 312 143 52 52 chr15 49371845 49371922 -36323832 - L1MCa LINE L1 -4358 2068 1992 * 350 228 35 79 chr15 49371892 49372006 -36323748 + L1MC4 LINE L1 6614 6722 -1320 210 37 0 0 chr15 49372052 49372079 -36323675 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 475 125 62 0 chr15 49372082 49372178 -36323576 - L1MB2 LINE L1 -1 6170 6069 488 258 9 19 chr15 49372178 49372391 -36323363 - L1MC4 LINE L1 -131 7911 7701 410 325 15 40 chr15 49372764 49372964 -36322790 - L1ME LINE L1 -1319 4827 4633 2314 108 3 0 chr15 49373174 49373481 -36322273 + AluSp SINE Alu 6 313 0 353 283 28 18 chr15 49373903 49374186 -36321568 + AluSp SINE Alu 2 287 -16 1783 168 59 35 chr15 49374787 49374827 -36320927 - MLT2D LTR ERVL 0 414 376 779 39 10 0 chr15 49374827 49374930 -36320824 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 2346 106 0 0 chr15 49374932 49375225 -36320529 - AluSc SINE Alu -16 293 1 1783 168 59 35 chr15 49375225 49375585 -36320169 - MLT2D LTR ERVL -38 376 1 509 236 17 35 chr15 49375745 49375919 -36319835 - MLT2B1 LTR ERVL -349 171 1 547 161 119 3 chr15 49375977 49376102 -36319652 - L1MB7 LINE L1 -4 6174 6038 1261 254 133 47 chr15 49376112 49376809 -36318945 - LTR50 LTR ERVL -31 764 8 2780 100 11 0 chr15 49376907 49377276 -36318478 - THE1C LTR MaLR -2 373 1 22 0 0 0 chr15 49378193 49378215 -36317539 + AT_rich Low_complexity Low_complexity 1 22 0 280 229 16 0 chr15 49378255 49378316 -36317438 - L1ME3A LINE L1 -89 6081 6020 1545 265 59 35 chr15 49378509 49379019 -36316735 + MLT2E LTR ERVL 107 628 0 254 64 109 9 chr15 49379137 49379247 -36316507 + (TA)n Simple_repeat Simple_repeat 1 121 0 330 121 0 0 chr15 49379260 49379326 -36316428 + (TTAA)n Simple_repeat Simple_repeat 2 67 0 261 61 114 18 chr15 49379324 49379438 -36316316 + (TA)n Simple_repeat Simple_repeat 1 125 0 * 1367 263 76 13 chr15 49379442 49380040 -36315714 - L1ME3A LINE L1 -244 5926 5260 2227 92 0 34 chr15 49380129 49380423 -36315331 + AluSx SINE Alu 1 284 -28 10549 44 6 2 chr15 49380446 49382504 -36313250 + L1PA5 LINE L1 4117 6154 0 4066 225 35 67 chr15 49382505 49383968 -36311786 - L1ME3A LINE L1 -1233 4913 3498 1087 213 59 12 chr15 49383979 49384232 -36311522 - AluJo SINE Alu -11 301 37 1392 241 93 31 chr15 49384252 49384674 -36311080 - L1ME3A LINE L1 -2657 3489 3094 2291 93 7 0 chr15 49384674 49384965 -36310789 - AluSc SINE Alu -11 298 6 1392 241 93 31 chr15 49384965 49385059 -36310695 - L1ME3A LINE L1 -3052 3094 3007 216 67 0 0 chr15 49385059 49385089 -36310665 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2360 75 0 0 chr15 49385092 49385373 -36310381 - AluSx SINE Alu -31 281 1 1392 241 93 31 chr15 49385373 49385518 -36310236 - L1ME3A LINE L1 -3140 3006 2782 234 54 0 0 chr15 49386527 49386564 -36309190 + L1PB4 LINE L1 5649 5685 -471 1021 199 6 0 chr15 49386564 49386745 -36309009 + AluSp SINE Alu 50 231 -82 655 83 0 21 chr15 49386981 49387070 -36308684 + AluSg/x SINE Alu 206 294 -18 2938 144 6 23 chr15 49387070 49387583 -36308171 + L1PB4 LINE L1 5652 6155 -1 2171 121 0 0 chr15 49387796 49388085 -36307669 - AluSx SINE Alu -23 289 1 204 284 126 11 chr15 49388594 49388689 -36307065 - MIR SINE MIR -119 143 38 1254 237 76 37 chr15 49389367 49389853 -36305901 - MLT1H LTR MaLR 0 549 45 767 234 168 25 chr15 49389876 49390197 -36305557 - LTR16A LTR ERVL -22 428 62 472 240 78 8 chr15 49391524 49391653 -36304101 - MIR SINE MIR -90 172 35 269 288 68 30 chr15 49392139 49392271 -36303483 - MLT1K LTR MaLR -275 313 177 578 264 39 43 chr15 49392980 49393188 -36302566 + LTR16C LTR ERVL 146 352 -139 602 260 39 43 chr15 49393727 49393935 -36301819 + LTR16C LTR ERVL 146 352 -139 290 231 0 0 chr15 49394126 49394191 -36301563 + LTR16C LTR ERVL 427 491 0 1000 191 9 40 chr15 49395067 49395292 -36300462 + MER20 DNA MER1_type 1 218 -1 651 211 19 37 chr15 49395696 49395857 -36299897 + MER20 DNA MER1_type 61 218 -1 2304 86 0 33 chr15 49396346 49396649 -36299105 + AluSg SINE Alu 1 293 -17 1612 201 22 0 chr15 49396851 49397169 -36298585 - L1MB7 LINE L1 -61 6123 5799 372 281 66 0 chr15 49397597 49397718 -36298036 + L3 LINE CR1 658 786 -791 223 276 40 40 chr15 49397756 49397832 -36297922 + L2 LINE L2 3112 3187 -85 219 88 0 0 chr15 49398341 49398375 -36297379 + (CA)n Simple_repeat Simple_repeat 2 35 0 257 279 99 9 chr15 49398994 49399105 -36296649 + L3 LINE CR1 852 972 -605 533 249 52 85 chr15 49399116 49399421 -36296333 + AluSc SINE Alu 5 299 0 257 279 99 9 chr15 49399691 49399802 -36295952 + L3 LINE CR1 852 972 -605 2388 83 20 0 chr15 49399809 49400109 -36295645 + AluSc SINE Alu 1 306 -3 192 275 150 17 chr15 49400163 49400283 -36295471 + L3 LINE CR1 1323 1458 -119 245 324 141 27 chr15 49401559 49401744 -36294010 + LTR67 LTR ERVL 64 269 -288 623 212 15 22 chr15 49401862 49401999 -36293755 + LTR67 LTR ERVL 422 557 0 1382 181 49 160 chr15 49402208 49402776 -36292978 + MLT1E2 LTR MaLR 1 626 0 592 327 36 7 chr15 49403199 49403602 -36292152 + ERVL LTR ERVL 4496 4899 -755 1743 178 34 34 chr15 49403786 49404058 -36291696 + MER63 DNA MER1_type 679 953 -108 2314 101 0 10 chr15 49404058 49404364 -36291390 - AluSg1 SINE Alu -6 303 1 1743 178 34 34 chr15 49404364 49404474 -36291280 + MER63 DNA MER1_type 952 1061 0 357 346 25 6 chr15 49404506 49404665 -36291089 + ERVL LTR ERVL 5177 5338 -316 2379 97 0 0 chr15 49404876 49405184 -36290570 - AluSq SINE Alu -5 308 1 229 263 18 18 chr15 49406305 49406362 -36289392 + LTR67 LTR ERVL 102 158 -399 258 286 205 6 chr15 49406400 49406561 -36289193 + LTR67 LTR ERVL 355 547 -10 211 318 0 47 chr15 49407099 49407184 -36288570 - MIR SINE MIR -83 125 45 471 218 143 0 chr15 49407886 49408019 -36287735 - L1MD3 LINE L1 -13 7982 7831 * 821 205 94 43 chr15 49408017 49408168 -36287586 - L1MD2 LINE L1 -214 6145 5976 1965 128 85 23 chr15 49408168 49408521 -36287233 - THE1C LTR MaLR 0 375 1 821 205 94 43 chr15 49408521 49408603 -36287151 - L1MD2 LINE L1 -383 5976 5900 1773 190 89 67 chr15 49408849 49409343 -36286411 + MLT1D LTR MaLR 1 505 0 199 270 0 63 chr15 49409344 49409407 -36286347 + L2 LINE L2 3205 3263 -9 303 291 4 76 chr15 49410431 49410706 -36285048 + L1M4 LINE L1 4764 5018 -1128 2355 87 3 0 chr15 49411083 49411370 -36284384 - AluSx SINE Alu -24 288 1 256 259 145 8 chr15 49411426 49411557 -36284197 + L1ME4a LINE L1 5973 6121 0 685 274 112 78 chr15 49411559 49412095 -36283659 - LTR67 LTR ERVL -2 555 2 2658 150 34 11 chr15 49412541 49413015 -36282739 - MER31A LTR ERV1 0 485 1 2059 108 26 3 chr15 49415620 49415926 -36279828 + AluSp SINE Alu 1 313 0 225 0 0 0 chr15 49416295 49416320 -36279434 + (A)n Simple_repeat Simple_repeat 1 25 0 2212 111 10 0 chr15 49417983 49418281 -36277473 - AluSq SINE Alu -11 302 2 28 0 0 0 chr15 49418284 49418312 -36277442 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr15 49419693 49419717 -36276037 + AT_rich Low_complexity Low_complexity 1 24 0 2000 108 58 0 chr15 49420083 49420361 -36275393 + AluSx SINE Alu 1 294 -18 1667 155 14 34 chr15 49420554 49420851 -36274903 + AluJo SINE Alu 1 291 -21 622 298 219 21 chr15 49420892 49421372 -36274382 - L1MC4a LINE L1 -1879 5929 5355 216 0 0 0 chr15 49422150 49422174 -36273580 + (T)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr15 49422830 49422861 -36272893 + AT_rich Low_complexity Low_complexity 1 31 0 1555 158 67 42 chr15 49423472 49423802 -36271952 + MER44D DNA MER2_type 1 608 -1 198 343 162 9 chr15 49424086 49424191 -36271563 + L2 LINE L2 3137 3257 -15 419 120 173 0 chr15 49424434 49424509 -36271245 + FLAM_A SINE Alu 25 112 -30 12259 31 4 0 chr15 49424543 49426308 -36269446 + L1PA4 LINE L1 3920 5688 -467 971 42 0 0 chr15 49426449 49426567 -36269187 + L1PA4 LINE L1 6027 6144 -11 190 336 112 16 chr15 49426597 49426722 -36269032 - MIR SINE MIR -110 152 16 304 363 65 18 chr15 49426879 49427047 -36268707 + MIR SINE MIR 77 252 -10 688 216 0 0 chr15 49428004 49428120 -36267634 + FLAM_C SINE Alu 1 116 -27 22 56 0 0 chr15 49428129 49428165 -36267589 + AT_rich Low_complexity Low_complexity 1 36 0 296 225 169 0 chr15 49428351 49428440 -36267314 + L2 LINE L2 3168 3271 -1 3178 168 21 28 chr15 49432832 49433446 -36262308 + MER50 LTR ERV1 118 727 -7 27 49 0 0 chr15 49433769 49433810 -36261944 + AT_rich Low_complexity Low_complexity 1 41 0 1458 130 40 100 chr15 49435458 49435594 -36260160 + AluJb SINE Alu 1 144 -163 2223 97 3 3 chr15 49435594 49435894 -36259860 + AluSq SINE Alu 1 300 -13 1458 130 40 100 chr15 49435894 49436082 -36259672 + AluJb SINE Alu 144 307 0 210 37 0 0 chr15 49436634 49436661 -36259093 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1760 162 4 0 chr15 49436661 49436939 -36258815 - AluJb SINE Alu -28 284 6 1568 211 4 0 chr15 49437206 49437481 -36258273 - AluJb SINE Alu -34 278 3 2019 131 10 3 chr15 49437924 49438222 -36257532 - AluSx SINE Alu -12 300 1 434 239 80 35 chr15 49438537 49438650 -36257104 + MIR SINE MIR 57 174 -88 1157 207 28 31 chr15 49438839 49439129 -36256625 - L1ME3 LINE L1 -30 6132 5844 542 118 108 20 chr15 49439188 49439290 -36256464 + MSTD LTR MaLR 1 111 -254 813 137 83 36 chr15 49439305 49439473 -36256281 + MSTD LTR MaLR 221 396 0 334 335 102 10 chr15 49439704 49439910 -36255844 - MIR SINE MIR -28 234 10 2200 96 0 0 chr15 49442569 49442889 -36252865 + AluSx SINE Alu 1 320 0 32 75 0 0 chr15 49443306 49443373 -36252381 + AT_rich Low_complexity Low_complexity 1 67 0 467 304 187 23 chr15 49444306 49444746 -36251008 + L2 LINE L2 2748 3308 -5 25 65 0 0 chr15 49444982 49445028 -36250726 + AT_rich Low_complexity Low_complexity 1 46 0 619 90 11 0 chr15 49445244 49445333 -36250421 + L1PA8 LINE L1 6070 6159 -13 29 0 0 0 chr15 49446173 49446202 -36249552 + AT_rich Low_complexity Low_complexity 1 29 0 1962 142 0 10 chr15 49446522 49446817 -36248937 + AluJo SINE Alu 1 292 -20 427 319 46 8 chr15 49446850 49447113 -36248641 + L1ME4a LINE L1 5568 5840 -281 277 218 109 20 chr15 49447192 49447293 -36248461 + L1ME4a LINE L1 5968 6077 -44 257 286 17 59 chr15 49448686 49448805 -36246949 - MIR3 SINE MIR -1 207 94 1710 92 46 4 chr15 49449236 49449476 -36246278 - AluSx SINE Alu -18 294 45 2288 132 35 0 chr15 49449596 49449938 -36245816 - MER4D LTR ERV1 -28 875 522 959 64 0 0 chr15 49449940 49450065 -36245689 - L1PA2 LINE L1 0 6155 6031 400 320 116 40 chr15 49452339 49452667 -36243087 + MLT1J LTR MaLR 1 353 -158 188 238 75 62 chr15 49452834 49452914 -36242840 + MIR SINE MIR 132 212 -50 348 266 140 7 chr15 49453368 49453511 -36242243 - MIR SINE MIR 0 262 101 213 94 0 0 chr15 49453589 49453621 -36242133 + (TC)n Simple_repeat Simple_repeat 1 32 0 204 286 220 11 chr15 49453643 49453734 -36242020 + L2 LINE L2 3159 3268 -4 335 277 48 12 chr15 49455034 49455117 -36240637 + L2 LINE L2 3204 3289 -24 1434 211 20 13 chr15 49455607 49455911 -36239843 - AluJo SINE Alu -6 306 1 1735 184 7 0 chr15 49455937 49456236 -36239518 + AluJb SINE Alu 1 301 -11 248 303 33 128 chr15 49457627 49457901 -36237853 + L3 LINE CR1 1183 1430 -147 239 263 358 21 chr15 49457898 49458088 -36237666 + MIR SINE MIR 9 262 0 * 207 286 0 0 chr15 49458165 49458214 -36237540 + L3 LINE CR1 1528 1576 -1 225 65 0 0 chr15 49458636 49458667 -36237087 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr15 49458694 49458717 -36237037 + AT_rich Low_complexity Low_complexity 1 23 0 502 270 34 82 chr15 49459591 49459884 -36235870 + L2 LINE L2 3035 3313 0 368 328 53 72 chr15 49460572 49460932 -36234822 + L1MEd LINE L1 35 387 -5732 2231 101 3 3 chr15 49461217 49461524 -36234230 + AluSp SINE Alu 1 307 -6 230 219 98 61 chr15 49462551 49462633 -36233121 + MIR SINE MIR 28 112 -150 207 0 0 0 chr15 49463767 49463790 -36231964 + (CA)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr15 49463958 49463994 -36231760 + AT_rich Low_complexity Low_complexity 1 36 0 303 263 127 71 chr15 49467185 49467523 -36228231 + L2 LINE L2 2833 3189 -124 268 305 75 40 chr15 49467999 49468173 -36227581 + MIR SINE MIR 75 254 -8 2978 114 7 5 chr15 49468221 49468652 -36227102 - MER57B LTR ERV1 -2 432 1 2005 113 3 27 chr15 49468695 49469015 -36226739 + AluSp SINE Alu 1 313 0 999 215 70 55 chr15 49469015 49469471 -36226283 + L1MC5 LINE L1 7318 7780 -181 6575 178 41 27 chr15 49469485 49471873 -36223881 + L1MB2 LINE L1 3751 6169 -2 2035 111 3 33 chr15 49471913 49472219 -36223535 - AluSx SINE Alu -15 297 1 436 204 10 48 chr15 49472282 49472385 -36223369 + L1MC5 LINE L1 7805 7903 -58 294 216 108 39 chr15 49472959 49473061 -36222693 - L1ME4a LINE L1 -16 6105 5997 1526 186 65 0 chr15 49473440 49473731 -36222023 + AluJb SINE Alu 1 310 -2 3948 194 52 11 chr15 49473809 49474599 -36221155 - MER21B LTR ERV1 -30 833 12 883 122 15 0 chr15 49474828 49474959 -36220795 + AluSq/x SINE Alu 1 133 -180 238 313 26 43 chr15 49475014 49475129 -36220625 - L2 LINE L2 -5 3267 3155 790 331 87 38 chr15 49475443 49475996 -36219758 + L2 LINE L2 2217 2796 -518 252 293 45 68 chr15 49476104 49476237 -36219517 - MIR SINE MIR -63 145 16 227 333 232 6 chr15 49476408 49476511 -36219243 - L2 LINE L2 -81 3232 3154 2101 58 11 25 chr15 49476511 49476787 -36218967 + AluY SINE Alu 1 272 -39 227 333 232 6 chr15 49476787 49477028 -36218726 - L2 LINE L2 -159 3154 2810 1134 233 82 71 chr15 49479472 49479923 -36215831 + MLT1H LTR MaLR 56 511 -38 24 0 0 0 chr15 49480342 49480366 -36215388 + AT_rich Low_complexity Low_complexity 1 24 0 2193 125 3 0 chr15 49480388 49480683 -36215071 + AluSp SINE Alu 1 296 -17 1037 226 10 0 chr15 49480808 49481003 -36214751 - MER58A DNA MER1_type -1 223 27 1837 177 99 3 chr15 49481157 49481473 -36214281 + MLT2C1 LTR ERVL 1 358 -39 279 0 0 0 chr15 49481473 49481504 -36214250 + (CA)n Simple_repeat Simple_repeat 2 32 0 1837 177 99 3 chr15 49481504 49481549 -36214205 + MLT2C1 LTR ERVL 358 397 0 367 181 0 21 chr15 49481674 49481768 -36213986 + GA-rich Low_complexity Low_complexity 3 94 0 441 0 0 0 chr15 49481769 49481818 -36213936 + (TG)n Simple_repeat Simple_repeat 2 50 0 456 267 49 121 chr15 49481856 49482163 -36213591 + MLT1I LTR MaLR 100 384 -25 269 133 22 0 chr15 49482465 49482510 -36213244 + GA-rich Low_complexity Low_complexity 4 49 0 402 75 21 43 chr15 49482510 49482603 -36213151 + (GAGAA)n Simple_repeat Simple_repeat 3 93 0 2422 104 147 5 chr15 49483399 49483774 -36211980 + MSTA LTR MaLR 1 428 0 848 204 20 0 chr15 49483774 49483921 -36211833 - FRAM SINE Alu -34 142 1 2526 41 0 7 chr15 49484792 49485087 -36210667 + AluY SINE Alu 5 297 -14 189 366 70 21 chr15 49485162 49485304 -36210450 - MIR SINE MIR -113 149 1 1546 186 19 0 chr15 49485766 49486030 -36209724 - AluJo SINE Alu -16 296 28 430 261 75 46 chr15 49486442 49486644 -36209110 + MIR SINE MIR 25 230 -32 869 194 61 0 chr15 49486660 49486825 -36208929 + AluJo SINE Alu 4 178 -134 220 271 34 0 chr15 49486854 49486913 -36208841 + L2 LINE L2 2772 2832 -482 236 271 96 141 chr15 49487041 49487072 -36208682 + L2 LINE L2 2995 3026 -246 2596 56 0 0 chr15 49487072 49487376 -36208378 - AluY SINE Alu -7 304 1 236 271 96 141 chr15 49487376 49487635 -36208119 + L2 LINE L2 3026 3272 0 1117 182 22 39 chr15 49488313 49488544 -36207210 + AluJo SINE Alu 69 295 -17 1096 104 6 38 chr15 49489278 49489461 -36206293 + L1MA4A LINE L1 6127 6303 0 309 233 165 0 chr15 49490079 49490182 -36205572 + L1ME4a LINE L1 5975 6094 -27 21 0 0 0 chr15 49491003 49491024 -36204730 + AT_rich Low_complexity Low_complexity 1 21 0 4727 149 14 13 chr15 49491434 49491726 -36204028 + L1PA16 LINE L1 4757 5047 -1119 2441 78 3 0 chr15 49491726 49492032 -36203722 + AluSp SINE Alu 1 307 -6 4727 149 14 13 chr15 49492032 49492959 -36202795 + L1PA16 LINE L1 5047 5972 -194 275 241 25 13 chr15 49492995 49493074 -36202680 - L1PBa LINE L1 -6491 372 293 810 21 10 0 chr15 49493098 49493195 -36202559 + L1HS LINE L1 1 98 -6048 * 38880 26 23 1 chr15 49493189 49498605 -36197149 + L1HS LINE L1 617 6155 0 992 148 88 0 chr15 49498614 49498796 -36196958 + L1PA16 LINE L1 5959 6156 -10 1927 161 7 0 chr15 49499121 49499420 -36196334 - AluJb SINE Alu -11 301 1 248 213 13 40 chr15 49499601 49499676 -36196078 - MSTA LTR MaLR -355 73 1 2495 58 0 7 chr15 49499945 49500254 -36195500 + AluY SINE Alu 1 307 -4 2139 92 0 7 chr15 49500587 49500902 -36194852 - AluSq SINE Alu 0 313 1 1428 154 0 0 chr15 49501122 49501349 -36194405 + AluSg/x SINE Alu 85 311 -1 655 97 0 11 chr15 49501350 49501443 -36194311 - MER4A LTR ERV1 -572 92 1 2105 136 0 3 chr15 49502070 49502379 -36193375 - AluSx SINE Alu -2 310 3 2079 205 60 27 chr15 49502622 49503071 -36192683 - MLT1C LTR MaLR -3 464 1 806 273 73 23 chr15 49503083 49503383 -36192371 + Charlie7 DNA MER1_type 1 315 -2297 1218 232 163 13 chr15 49503383 49503763 -36191991 + Charlie7 DNA MER1_type 1424 1860 -752 2285 123 0 0 chr15 49503847 49504157 -36191597 + AluSx SINE Alu 1 310 -2 427 279 64 0 chr15 49504178 49504318 -36191436 + L1MEd LINE L1 40 188 -5931 382 223 46 39 chr15 49504396 49504526 -36191228 + Charlie7 DNA MER1_type 70 200 -2412 556 159 0 167 chr15 49504654 49504792 -36190962 - AluJb SINE Alu -61 251 137 734 242 11 16 chr15 49505712 49505898 -36189856 + LTR41 LTR ERVL 3 187 -586 733 183 35 142 chr15 49506041 49506258 -36189496 + LTR41 LTR ERVL 446 685 162 2251 66 35 3 chr15 49506258 49506545 -36189209 - AluY SINE Alu -15 296 1 2281 86 3 0 chr15 49506547 49506838 -36188916 - AluSg SINE Alu -18 292 1 733 183 35 142 chr15 49506838 49506919 -36188835 + LTR41 LTR ERVL 435 523 0 223 253 116 130 chr15 49506922 49507068 -36188686 - MIR3 SINE MIR -23 185 42 208 306 0 0 chr15 49507100 49507162 -36188592 + L2 LINE L2 3252 3313 0 2467 78 3 3 chr15 49507409 49507715 -36188039 - AluSq SINE Alu -1 312 7 1700 70 5 5 chr15 49507843 49508056 -36187698 + AluSq SINE Alu 91 303 -10 386 273 99 41 chr15 49508439 49508611 -36187143 + MIR3 SINE MIR 16 197 -11 970 114 15 0 chr15 49508717 49508848 -36186906 + AluSq/x SINE Alu 1 133 -179 2207 211 73 128 chr15 49509085 49509123 -36186631 - L1MC5 LINE L1 -64 7897 7858 2177 108 28 0 chr15 49509123 49509410 -36186344 - AluSx SINE Alu -17 295 1 2207 211 73 128 chr15 49509410 49509540 -36186214 - L1MC5 LINE L1 -103 7858 7722 2161 112 0 0 chr15 49509540 49509834 -36185920 + AluSx SINE Alu 1 294 -18 2207 211 73 128 chr15 49509834 49510889 -36184865 - L1MC5 LINE L1 -239 7722 6741 1338 166 61 0 chr15 49511838 49512067 -36183687 - AluJb SINE Alu -12 300 58 2241 114 3 0 chr15 49512323 49512630 -36183124 + AluSq SINE Alu 1 308 -5 21 57 0 0 chr15 49512987 49513022 -36182732 + AT_rich Low_complexity Low_complexity 1 35 0 341 303 113 49 chr15 49513069 49513475 -36182279 + L1ME3A LINE L1 4903 5334 -812 2529 74 0 0 chr15 49513476 49513785 -36181969 + AluSc SINE Alu 1 309 0 627 232 178 8 chr15 49513801 49514042 -36181712 + L1ME3A LINE L1 5446 5727 -2081 260 299 169 50 chr15 49517727 49517988 -36177766 + L2 LINE L2 2461 2752 -562 426 201 94 38 chr15 49518197 49518356 -36177398 + L1ME3A LINE L1 5998 6165 -5 215 216 78 0 chr15 49518566 49518617 -36177137 + L2 LINE L2 3255 3309 -4 23 92 0 0 chr15 49519367 49519432 -36176322 + AT_rich Low_complexity Low_complexity 1 65 0 2531 74 0 0 chr15 49519908 49520219 -36175535 + AluY SINE Alu 1 311 0 2167 121 3 0 chr15 49520256 49520553 -36175201 + AluSx SINE Alu 1 298 -14 2291 59 65 0 chr15 49522026 49522316 -36173438 + AluY SINE Alu 1 309 -2 43 64 0 0 chr15 49522475 49522553 -36173201 + AT_rich Low_complexity Low_complexity 1 78 0 2009 145 13 0 chr15 49522668 49522971 -36172783 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr15 49523161 49523184 -36172570 + AT_rich Low_complexity Low_complexity 1 23 0 1319 266 161 72 chr15 49524524 49525165 -36170589 - L2 LINE L2 -126 3187 2605 2573 59 0 0 chr15 49525165 49525470 -36170284 + AluY SINE Alu 5 309 -2 1319 266 161 72 chr15 49525470 49525751 -36170003 - L2 LINE L2 -708 2605 2350 1556 94 0 0 chr15 49525756 49525948 -36169806 + AluSq SINE Alu 1 192 -121 495 145 0 24 chr15 49525948 49526025 -36169729 + AluS SINE Alu 237 312 0 1319 266 161 72 chr15 49526025 49526736 -36169018 - L2 LINE L2 -963 2350 1311 556 258 19 13 chr15 49527035 49527194 -36168560 - MIR SINE MIR -1 261 102 2518 58 0 0 chr15 49527214 49527509 -36168245 + AluY SINE Alu 1 295 -16 1783 156 7 23 chr15 49527721 49528028 -36167726 + AluJb SINE Alu 1 302 -10 419 285 95 45 chr15 49528120 49528320 -36167434 + MER63A DNA MER1_type 1 210 0 284 318 0 45 chr15 49529219 49529329 -36166425 - L2 LINE L2 0 3313 3209 208 254 160 71 chr15 49529325 49529375 -36166379 + L2 LINE L2 2970 3014 -299 * 2371 99 0 3 chr15 49529375 49529678 -36166076 - AluSx SINE Alu -10 302 1 208 254 160 71 chr15 49529678 49529796 -36165958 + L2 LINE L2 3014 3153 -160 399 297 0 40 chr15 49529832 49529980 -36165774 - L2 LINE L2 -426 2888 2747 2498 244 136 20 chr15 49529989 49530840 -36164914 - L2 LINE L2 -694 2620 1671 1405 164 0 0 chr15 49530952 49531165 -36164589 + AluJo SINE Alu 85 297 -15 1667 228 112 26 chr15 49531223 49531687 -36164067 - MLT1D LTR MaLR -1 504 1 542 274 44 15 chr15 49531776 49531911 -36163843 + L2 LINE L2 3134 3272 0 1655 139 41 52 chr15 49532251 49532375 -36163379 - MER4A LTR ERV1 0 664 540 2649 55 0 0 chr15 49532375 49532685 -36163069 - AluY SINE Alu -1 310 1 1655 139 41 52 chr15 49532685 49532909 -36162845 - MER4A LTR ERV1 -124 540 261 1126 89 45 62 chr15 49532931 49533110 -36162644 + AluY SINE Alu 1 176 -135 26 74 0 0 chr15 49533767 49533821 -36161933 + AT_rich Low_complexity Low_complexity 1 54 0 2236 209 87 40 chr15 49534042 49534667 -36161087 - MLT1E2 LTR MaLR -2 624 1 221 216 20 0 chr15 49534729 49534780 -36160974 + MIR3 SINE MIR 151 202 -6 2506 67 0 16 chr15 49535178 49535494 -36160260 + AluY SINE Alu 1 311 0 183 304 0 0 chr15 49535629 49535675 -36160079 + L2 LINE L2 3263 3308 -5 7255 69 4 20 chr15 49536275 49536365 -36159389 + L1HS LINE L1 4412 4502 -1653 2399 64 16 26 chr15 49536365 49536677 -36159077 + AluY SINE Alu 1 309 -2 7255 69 4 20 chr15 49536677 49538362 -36157392 + L1HS LINE L1 4502 6155 0 712 197 87 6 chr15 49538371 49538554 -36157200 + L1PA16 LINE L1 5959 6156 -10 1927 161 7 0 chr15 49538879 49539178 -36156576 - AluJb SINE Alu -11 301 1 21 0 0 0 chr15 49539558 49539579 -36156175 + AT_rich Low_complexity Low_complexity 1 21 0 1940 122 7 21 chr15 49539655 49539942 -36155812 - AluSx SINE Alu -29 283 1 2033 133 3 3 chr15 49540628 49540942 -36154812 + AluSq SINE Alu 1 314 0 709 166 20 60 chr15 49541433 49541584 -36154170 + L2 LINE L2 2606 2750 -564 304 184 35 123 chr15 49541587 49541701 -36154053 + L1MC4 LINE L1 7459 7562 -480 298 339 30 42 chr15 49541732 49541897 -36153857 + L2 LINE L2 2803 2965 -349 336 270 117 36 chr15 49541954 49542091 -36153663 - MLT1H LTR MaLR -12 537 390 804 201 216 0 chr15 49542149 49542343 -36153411 - MLT1H LTR MaLR -311 238 3 1292 192 28 5 chr15 49542440 49542654 -36153100 - MER20 DNA MER1_type 0 219 1 1940 123 0 74 chr15 49543535 49543861 -36151893 + AluJb SINE Alu 1 302 -10 2098 101 40 0 chr15 49543963 49544260 -36151494 + AluSg SINE Alu 1 309 -1 26 74 0 0 chr15 49545755 49545809 -36149945 + AT_rich Low_complexity Low_complexity 1 54 0 2236 209 87 40 chr15 49546030 49546655 -36149099 - MLT1E2 LTR MaLR -2 624 1 221 216 20 0 chr15 49546717 49546768 -36148986 + MIR3 SINE MIR 151 202 -6 2506 67 0 16 chr15 49547166 49547482 -36148272 + AluY SINE Alu 1 311 0 183 304 0 0 chr15 49547617 49547663 -36148091 + L2 LINE L2 3263 3308 -5 7296 64 9 1 chr15 49548263 49548353 -36147401 + L1PA7 LINE L1 4412 4500 -1654 2399 64 16 26 chr15 49548353 49548665 -36147089 + AluY SINE Alu 1 309 -2 7296 64 9 1 chr15 49548665 49550343 -36145411 + L1PA7 LINE L1 4500 6153 -1 919 103 0 22 chr15 49550436 49550572 -36145182 - AluSc SINE Alu -3 306 174 887 166 66 0 chr15 49550584 49550735 -36145019 - AluJb SINE Alu -23 289 129 321 344 64 24 chr15 49550842 49550967 -36144787 - MIR SINE MIR -62 146 17 26 50 0 0 chr15 49551041 49551081 -36144673 + AT_rich Low_complexity Low_complexity 1 40 0 206 203 0 51 chr15 49551808 49551867 -36143887 + CT-rich Low_complexity Low_complexity 6 61 0 377 215 70 123 chr15 49552206 49552434 -36143320 + L1MC4 LINE L1 7827 8042 0 2486 72 3 0 chr15 49552448 49552753 -36143001 + AluY SINE Alu 1 306 -5 1440 58 0 0 chr15 49552753 49552925 -36142829 + AluY SINE Alu 133 304 -7 352 374 0 0 chr15 49553318 49553473 -36142281 + L2 LINE L2 2553 2707 -607 1460 148 152 16 chr15 49553788 49554044 -36141710 + AluJo SINE Alu 1 291 -11 1003 232 19 0 chr15 49554053 49554260 -36141494 + L1MB5 LINE L1 5964 6174 0 649 257 53 49 chr15 49554668 49554913 -36140841 - MIR SINE MIR -10 252 7 30 27 0 0 chr15 49555069 49555106 -36140648 + AT_rich Low_complexity Low_complexity 1 37 0 2225 79 13 16 chr15 49555157 49555462 -36140292 + AluSp SINE Alu 1 304 -9 356 286 85 44 chr15 49555992 49556286 -36139468 + L1M4 LINE L1 2239 2544 -3602 263 253 59 3 chr15 49556375 49556491 -36139263 + L1P1 LINE L1 5317 5436 -719 619 218 248 5 chr15 49556698 49556900 -36138854 + MIR SINE MIR 10 260 -2 2199 114 0 0 chr15 49557010 49557309 -36138445 - AluSx SINE Alu -13 299 1 2427 120 19 22 chr15 49557427 49557794 -36137960 + MER47A DNA MER2_type 1 366 0 2075 132 0 0 chr15 49558591 49558895 -36136859 + AluSq SINE Alu 1 304 -9 2259 87 7 0 chr15 49559323 49559612 -36136142 + AluSx SINE Alu 17 307 -5 202 356 68 17 chr15 49559930 49560048 -36135706 + L2 LINE L2 3143 3266 -6 3512 174 82 16 chr15 49560325 49560603 -36135151 + MER44D DNA MER2_type 7 265 -2222 3059 173 59 37 chr15 49560603 49560628 -36135126 + MER6A DNA MER2_type 2 25 -840 1775 118 87 28 chr15 49560628 49560917 -36134837 - AluSx SINE Alu -6 306 1 3059 173 59 37 chr15 49560917 49561429 -36134325 + MER6A DNA MER2_type 25 556 -309 2408 79 10 0 chr15 49561429 49561733 -36134021 - AluSp SINE Alu -6 307 1 3059 173 59 37 chr15 49561733 49561785 -36133969 + MER6A DNA MER2_type 556 605 0 3512 174 82 16 chr15 49561785 49561945 -36133809 + MER44D DNA MER2_type 265 413 -2074 2140 137 3 10 chr15 49561945 49562259 -36133495 + AluSx SINE Alu 1 312 0 3512 174 82 16 chr15 49562259 49562501 -36133253 + MER44D DNA MER2_type 413 605 0 270 0 0 0 chr15 49563240 49563270 -36132484 + (CATA)n Simple_repeat Simple_repeat 2 31 0 461 277 58 29 chr15 49563896 49564033 -36131721 + MIR3 SINE MIR 43 183 -25 796 81 32 0 chr15 49564339 49564463 -36131291 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 631 330 40 17 chr15 49564506 49564806 -36130948 + L1ME4a LINE L1 5520 5826 -295 2296 111 0 9 chr15 49564881 49565196 -36130558 + AluSx SINE Alu 1 312 0 217 320 56 56 chr15 49565780 49565905 -36129849 + MIR SINE MIR 7 131 -131 196 275 14 58 chr15 49565899 49565968 -36129786 + L2 LINE L2 3246 3311 -2 * 2225 103 26 3 chr15 49567405 49567707 -36128047 + AluSx SINE Alu 4 312 0 457 248 90 85 chr15 49567708 49568180 -36127574 - L1ME4a LINE L1 -16 6105 5649 2123 133 0 0 chr15 49569419 49569713 -36126041 + AluSx SINE Alu 11 304 -8 323 264 94 0 chr15 49569907 49570013 -36125741 + MIR SINE MIR 19 134 -74 1997 125 3 7 chr15 49571154 49571457 -36124297 - AluSx SINE Alu -10 302 1 313 323 129 0 chr15 49571516 49571640 -36124114 + MIR3 SINE MIR 2 141 -67 184 268 161 0 chr15 49572286 49572342 -36123412 + L2 LINE L2 3203 3267 -5 2442 67 3 0 chr15 49572489 49572787 -36122967 - AluSp SINE Alu -14 299 1 591 246 140 9 chr15 49572846 49573103 -36122651 + MLT1H1 LTR MaLR 244 553 -2 336 229 85 104 chr15 49573142 49573248 -36122506 + MER117 DNA MER1_type 1 103 -94 2287 119 0 0 chr15 49573248 49573560 -36122194 + AluSx SINE Alu 1 312 0 336 229 85 104 chr15 49573560 49573654 -36122100 + MER117 DNA MER1_type 103 197 0 2314 99 0 0 chr15 49573700 49573994 -36121760 - AluSq SINE Alu -19 294 1 2590 61 0 3 chr15 49574730 49575040 -36120714 - AluY SINE Alu -1 310 2 2227 116 3 0 chr15 49575138 49575448 -36120306 - AluSq SINE Alu -2 311 1 2280 104 10 0 chr15 49575901 49576208 -36119546 - AluSx SINE Alu -2 310 1 785 234 29 39 chr15 49576208 49576247 -36119507 - MIR SINE MIR -2 260 222 4070 57 4 63 chr15 49576247 49576790 -36118964 + MER9 LTR ERVK 1 511 0 785 234 29 39 chr15 49576790 49576955 -36118799 - MIR SINE MIR -40 222 58 479 333 110 40 chr15 49577009 49577480 -36118274 - L2 LINE L2 -941 2373 1870 308 311 66 40 chr15 49577512 49577663 -36118091 - MER5B DNA MER1_type 0 178 24 576 309 34 62 chr15 49577982 49578362 -36117392 - L2 LINE L2 -179 3093 2728 309 270 81 0 chr15 49579014 49579125 -36116629 + MIR SINE MIR 17 136 -72 2188 87 0 46 chr15 49579950 49580273 -36115481 - AluSx SINE Alu -1 311 4 863 157 0 0 chr15 49580390 49580524 -36115230 + AluSq/x SINE Alu 1 134 -178 480 333 60 37 chr15 49580660 49580876 -36114878 + MIR SINE MIR 21 241 -21 222 37 0 0 chr15 49581711 49581738 -36114016 + (GA)n Simple_repeat Simple_repeat 2 28 0 1942 116 62 0 chr15 49581947 49582291 -36113463 - AluSx SINE Alu 0 362 1 283 266 65 24 chr15 49582297 49582421 -36113333 - L2 LINE L2 -1893 1421 1293 1993 126 0 25 chr15 49583419 49583736 -36112018 - AluJb SINE Alu -3 309 1 2376 51 0 13 chr15 49584020 49584332 -36111422 + AluY SINE Alu 1 308 -3 613 221 66 7 chr15 49584566 49584702 -36111052 - MER5B DNA MER1_type 0 178 35 336 64 0 0 chr15 49584802 49584849 -36110905 + (CA)n Simple_repeat Simple_repeat 1 47 0 1781 190 47 18 chr15 49585580 49585965 -36109789 - MSTD LTR MaLR 0 396 1 1746 129 0 45 chr15 49586554 49586841 -36108913 - MER4A LTR ERV1 0 664 391 673 93 21 10 chr15 49586886 49586983 -36108771 - MER4A LTR ERV1 -566 98 1 273 279 78 58 chr15 49587185 49587339 -36108415 - MIR3 SINE MIR -18 190 34 2322 72 16 0 chr15 49587863 49588167 -36107587 - AluSx SINE Alu -3 309 1 369 287 47 101 chr15 49588167 49588486 -36107268 - L1 LINE L1 -1878 4268 3971 422 141 0 0 chr15 49588498 49588562 -36107192 - L1PB2 LINE L1 -38 6113 6050 331 295 27 40 chr15 49589530 49589679 -36106075 + L2 LINE L2 2770 2916 -398 1988 128 7 0 chr15 49589756 49590046 -36105708 - AluSg SINE Alu -18 292 1 3865 202 60 35 chr15 49590063 49590626 -36105128 - L1ME1 LINE L1 -23 6143 5596 2342 60 0 10 chr15 49590626 49590928 -36104826 + AluY SINE Alu 2 300 -11 3865 202 60 35 chr15 49590928 49591360 -36104394 - L1ME1 LINE L1 -570 5596 5112 2029 117 0 0 chr15 49591360 49591665 -36104089 - AluSg SINE Alu 0 305 1 3865 202 60 35 chr15 49591665 49591881 -36103873 - L1ME1 LINE L1 -1054 5112 4903 2735 181 37 25 chr15 49591899 49592494 -36103260 + L1ME1 LINE L1 5324 5925 -241 657 241 0 0 chr15 49592649 49592811 -36102943 + L1MA10 LINE L1 6170 6331 -3 1307 197 68 70 chr15 49592815 49592929 -36102825 - L1ME1 LINE L1 -1300 4846 4733 2073 82 41 3 chr15 49592929 49593223 -36102531 - AluY SINE Alu -6 305 1 1307 197 68 70 chr15 49593223 49593428 -36102326 - L1ME1 LINE L1 -1413 4733 4526 2017 94 10 16 chr15 49593428 49593735 -36102019 - AluY SINE Alu -6 305 1 1307 197 68 70 chr15 49593735 49593887 -36101867 - L1ME1 LINE L1 -1620 4526 4375 36 53 0 0 chr15 49594132 49594189 -36101565 + AT_rich Low_complexity Low_complexity 1 57 0 244 233 69 98 chr15 49594213 49594458 -36101296 + L1MC5 LINE L1 7690 7927 -34 316 293 115 43 chr15 49594464 49594672 -36101082 + L2 LINE L2 3075 3297 -16 2385 87 0 0 chr15 49595209 49595521 -36100233 - AluSx SINE Alu 0 312 1 1838 100 0 8 chr15 49595683 49595944 -36099810 - AluSq SINE Alu -6 307 49 308 192 39 51 chr15 49596444 49596522 -36099232 - L2 LINE L2 0 3272 3196 438 263 110 35 chr15 49596663 49596870 -36098884 - MIR SINE MIR -11 251 34 2433 45 0 0 chr15 49597211 49597503 -36098251 - AluY SINE Alu -19 292 1 1905 90 40 7 chr15 49597804 49598081 -36097673 - AluSq SINE Alu -27 286 1 21 0 0 0 chr15 49598611 49598632 -36097122 + AT_rich Low_complexity Low_complexity 1 21 0 445 214 37 144 chr15 49598876 49598940 -36096814 - MIR SINE MIR -11 251 182 2279 99 0 0 chr15 49598940 49599244 -36096510 - AluSx SINE Alu -8 304 1 445 214 37 144 chr15 49599244 49599366 -36096388 - MIR SINE MIR -80 182 85 217 279 57 100 chr15 49599402 49599631 -36096123 - L2 LINE L2 -853 2461 2243 180 268 0 0 chr15 49599860 49599901 -36095853 + MER5B DNA MER1_type 1 41 -137 2285 106 0 0 chr15 49599904 49600216 -36095538 - AluSq SINE Alu -1 312 1 1052 129 0 12 chr15 49600219 49600389 -36095365 - AluSg/x SINE Alu 0 310 143 530 156 0 143 chr15 49600389 49600473 -36095281 + MER5B DNA MER1_type 41 135 -43 1476 169 67 0 chr15 49600473 49600757 -36094997 - AluJo SINE Alu -9 303 1 2165 113 0 7 chr15 49600767 49601076 -36094678 - AluSg SINE Alu -3 307 1 530 156 0 143 chr15 49601076 49601134 -36094620 + MER5B DNA MER1_type 145 172 -6 342 313 73 30 chr15 49601201 49601394 -36094360 - MIR SINE MIR -34 228 20 231 234 0 21 chr15 49602027 49602074 -36093680 + L2 LINE L2 3252 3297 -16 742 289 32 16 chr15 49602131 49602377 -36093377 + MIR SINE MIR 3 252 -10 184 305 153 17 chr15 49602562 49602678 -36093076 - MIR3 SINE MIR -65 143 12 872 182 50 0 chr15 49602678 49602837 -36092917 - MER5A DNA MER1_type 0 189 23 505 146 22 0 chr15 49602952 49603041 -36092713 + L1MA4A LINE L1 6190 6280 -23 203 309 73 0 chr15 49604861 49604929 -36090825 + L2 LINE L2 3241 3313 0 262 231 19 0 chr15 49604971 49605023 -36090731 + MER3 DNA MER1_type 1 53 -156 554 271 57 31 chr15 49605024 49605216 -36090538 + MIR SINE MIR 8 204 -58 203 242 97 32 chr15 49605252 49605314 -36090440 + MIR SINE MIR 197 262 0 666 277 71 77 chr15 49606759 49607098 -36088656 + L2 LINE L2 2935 3271 -1 2392 183 22 42 chr15 49608167 49608625 -36087129 + MLT1C LTR MaLR 1 458 -9 1378 179 44 4 chr15 49608730 49608848 -36086906 + AluJb SINE Alu 1 113 -200 180 0 0 0 chr15 49608848 49608868 -36086886 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1378 179 44 4 chr15 49608868 49609051 -36086703 + AluJb SINE Alu 113 313 0 327 157 98 16 chr15 49609326 49609404 -36086350 - AluS SINE Alu -229 74 16 744 300 9 30 chr15 49609429 49609479 -36086275 + MIR SINE MIR 19 69 -193 1852 133 58 56 chr15 49609479 49609839 -36085915 - MER46B DNA MER2_type 0 236 1 744 300 9 30 chr15 49609839 49610021 -36085733 + MIR SINE MIR 69 246 -16 200 339 0 0 chr15 49610049 49610108 -36085646 - MIR SINE MIR -186 76 18 22 88 0 0 chr15 49610630 49610687 -36085067 + AT_rich Low_complexity Low_complexity 1 57 0 2086 98 10 3 chr15 49610795 49611091 -36084663 + AluSx SINE Alu 1 298 -14 1328 55 0 0 chr15 49611220 49611385 -36084369 - AluY SINE Alu -12 299 135 488 268 75 57 chr15 49611467 49611732 -36084022 + MLT1J LTR MaLR 237 506 -5 2215 75 0 0 chr15 49611895 49612208 -36083546 + AluSq SINE Alu 1 313 0 2404 65 0 0 chr15 49612538 49612847 -36082907 - AluY SINE Alu -2 309 1 345 289 140 50 chr15 49613064 49613115 -36082639 + L2 LINE L2 1895 1940 -1374 2498 139 30 37 chr15 49613115 49613546 -36082208 + MSTA LTR MaLR 1 428 0 345 289 140 50 chr15 49613546 49613676 -36082078 + L2 LINE L2 1940 2057 -1257 1746 176 0 10 chr15 49613676 49613982 -36081772 - AluJb SINE Alu -9 303 1 345 289 140 50 chr15 49613982 49614235 -36081519 + L2 LINE L2 2057 2369 -945 405 276 103 26 chr15 49614957 49615189 -36080565 - HAL1 LINE L1 -10 2497 2248 2267 92 3 3 chr15 49615284 49615590 -36080164 - AluSx SINE Alu -6 306 1 2213 103 7 0 chr15 49615590 49615891 -36079863 - AluSx SINE Alu -9 303 1 269 236 34 22 chr15 49616144 49616233 -36079521 - HAL1 LINE L1 -343 2164 2075 * 611 250 44 24 chr15 49616223 49616475 -36079279 - HAL1 LINE L1 -1256 1251 995 3471 109 25 51 chr15 49616639 49617242 -36078512 - L1MC3 LINE L1 -8 7777 7191 240 310 0 0 chr15 49617243 49617314 -36078440 - MLT1F1 LTR MaLR -442 125 55 1969 144 0 0 chr15 49617963 49618248 -36077506 + AluJo SINE Alu 3 290 -22 285 51 0 0 chr15 49618248 49618287 -36077467 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1969 144 0 0 chr15 49618287 49618299 -36077455 + AluJo SINE Alu 289 300 -12 299 322 58 8 chr15 49618439 49618560 -36077194 + L2 LINE L2 2917 3043 -229 1914 125 0 4 chr15 49619006 49619286 -36076468 - AluSg SINE Alu -14 296 18 2166 96 3 0 chr15 49620084 49620376 -36075378 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr15 49620516 49620538 -36075216 + AT_rich Low_complexity Low_complexity 1 22 0 1094 235 35 58 chr15 49620569 49620710 -36075044 + L1MC4a LINE L1 6448 6591 -1370 2165 91 0 3 chr15 49620710 49621029 -36074725 + AluSg SINE Alu 1 318 0 1094 235 35 58 chr15 49621029 49621720 -36074034 + L1MC4a LINE L1 6591 7231 -730 2915 142 42 0 chr15 49621730 49622208 -36073546 + L1 LINE L1 3377 3874 -2272 679 238 111 65 chr15 49622222 49622998 -36072756 + L1MC4 LINE L1 7206 8036 -6 287 281 53 35 chr15 49623093 49623207 -36072547 - L2 LINE L2 -18 3254 3139 505 239 120 0 chr15 49623251 49623368 -36072386 - L2 LINE L2 -3 3269 3139 209 200 0 0 chr15 49625582 49625632 -36070122 + CT-rich Low_complexity Low_complexity 3 52 0 5494 70 16 107 chr15 49625822 49626864 -36068890 + SVA Other Other 11 958 -428 529 311 23 11 chr15 49627600 49627777 -36067977 - MER5A DNA MER1_type 0 189 11 554 283 21 68 chr15 49627801 49627992 -36067762 - MER91A DNA MER1_type 0 196 15 473 183 55 128 chr15 49628203 49628324 -36067430 - MER5B DNA MER1_type 0 178 70 2349 76 3 3 chr15 49628324 49628626 -36067128 - AluY SINE Alu -6 305 4 473 183 55 128 chr15 49628626 49628668 -36067086 - MER5B DNA MER1_type -108 70 27 1873 102 7 21 chr15 49628863 49629147 -36066607 + AluSx SINE Alu 32 311 -1 206 333 0 0 chr15 49630517 49630577 -36065177 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 182 61 0 30 chr15 49630906 49630939 -36064815 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1416 174 115 0 chr15 49630944 49631197 -36064557 - AluJo SINE Alu -30 282 1 620 275 28 0 chr15 49631265 49631447 -36064307 + MLT1J LTR MaLR 19 205 -306 249 270 40 0 chr15 49631703 49631777 -36063977 + MIR SINE MIR 179 255 -7 1220 124 0 0 chr15 49632286 49632447 -36063307 + AluSg/x SINE Alu 132 292 -18 271 263 93 17 chr15 49633033 49633089 -36062665 + L2 LINE L2 3145 3195 -77 776 211 57 0 chr15 49633089 49633264 -36062490 + MER5A DNA MER1_type 1 185 -4 271 263 93 17 chr15 49633264 49633325 -36062429 + L2 LINE L2 3195 3271 -1 2423 70 3 16 chr15 49633457 49633770 -36061984 + AluSc SINE Alu 1 309 0 190 188 21 21 chr15 49635099 49635147 -36060607 - MIR3 SINE MIR -52 156 109 208 354 10 0 chr15 49635518 49635614 -36060140 + L3b LINE CR1 1284 1380 -203 915 93 29 22 chr15 49635778 49635917 -36059837 + AluJb SINE Alu 160 299 -13 493 343 82 9 chr15 49637238 49637471 -36058283 + L2 LINE L2 2812 3061 -211 431 133 36 24 chr15 49637843 49637926 -36057828 - AluJ/FLAM SINE Alu -228 84 1 437 293 39 63 chr15 49638093 49638424 -36057330 - L1MC4 LINE L1 -190 7852 7530 546 239 0 0 chr15 49638486 49638595 -36057159 + MER81 DNA DNA 6 114 0 297 321 46 28 chr15 49638760 49638869 -36056885 + L2 LINE L2 3125 3235 -37 2114 92 4 4 chr15 49638875 49639205 -36056549 - AluSc SINE Alu 0 330 1 393 323 63 21 chr15 49640227 49640416 -36055338 - MIR SINE MIR -64 198 2 1095 169 0 0 chr15 49641272 49641444 -36054310 - MER5A DNA MER1_type -2 187 16 628 265 108 22 chr15 49641681 49642043 -36053711 + L1ME4a LINE L1 5629 6021 -100 2134 107 4 0 chr15 49643243 49643549 -36052205 - AluSp SINE Alu 0 307 1 180 0 0 0 chr15 49643705 49643725 -36052029 + (T)n Simple_repeat Simple_repeat 1 20 0 1940 124 3 64 chr15 49643847 49644177 -36051577 - AluJb SINE Alu 0 312 3 545 218 0 15 chr15 49644179 49644312 -36051442 + MER104 DNA Tc2 36 166 -14 22 35 0 0 chr15 49644879 49644908 -36050846 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr15 49645279 49645309 -36050445 + AT_rich Low_complexity Low_complexity 1 30 0 804 164 0 7 chr15 49645523 49645669 -36050085 - L1MB5 LINE L1 -88 6086 5942 410 167 0 31 chr15 49645670 49645766 -36049988 - L1MB5 LINE L1 -269 5905 5813 441 289 21 59 chr15 49646339 49646526 -36049228 - MER5A DNA MER1_type -9 180 1 217 316 13 13 chr15 49646944 49647023 -36048731 - L2 LINE L2 -1 3312 3234 306 248 0 0 chr15 49648055 49648164 -36047590 + (TCCA)n Simple_repeat Simple_repeat 3 111 0 1981 150 0 31 chr15 49648476 49648796 -36046958 + AluJb SINE Alu 1 310 -2 205 288 0 0 chr15 49648854 49648913 -36046841 + (TA)n Simple_repeat Simple_repeat 2 60 0 1537 286 34 21 chr15 49651288 49651822 -36043932 + L2 LINE L2 2771 3313 0 33 25 0 0 chr15 49653207 49653247 -36042507 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr15 49654838 49654860 -36040894 + AT_rich Low_complexity Low_complexity 1 22 0 1375 169 66 25 chr15 49655463 49655782 -36039972 - MER39 LTR ERV1 -5 702 371 302 143 18 36 chr15 49655819 49655875 -36039879 + MER39 LTR ERV1 335 389 -318 2214 77 13 10 chr15 49656030 49656329 -36039425 - AluSg1 SINE Alu -9 300 1 866 251 69 52 chr15 49656561 49657051 -36038703 - MLT1H LTR MaLR 0 549 10 362 288 189 0 chr15 49657722 49657833 -36037921 + MIR3 SINE MIR 58 189 -19 224 303 182 18 chr15 49657821 49657986 -36037768 + L3b LINE CR1 1289 1480 -103 * 232 176 286 11 chr15 49657984 49658075 -36037679 - L2 LINE L2 -2 3270 3155 358 267 33 0 chr15 49658243 49658333 -36037421 + MIR3 SINE MIR 108 200 -8 709 261 123 0 chr15 49658533 49658744 -36037010 - MIR SINE MIR -24 238 2 557 290 79 14 chr15 49658748 49658962 -36036792 - MIR SINE MIR -5 257 30 196 267 55 133 chr15 49659415 49659580 -36036174 - L2 LINE L2 -4 3309 3158 1829 222 80 19 chr15 49660401 49660973 -36034781 - L1ME1 LINE L1 -75 6025 5419 2189 60 0 66 chr15 49660986 49661316 -36034438 + AluY SINE Alu 1 310 0 2561 247 42 48 chr15 49661331 49662319 -36033435 - L1ME1 LINE L1 -1754 4326 3344 1303 238 91 34 chr15 49662317 49662898 -36032856 - L1ME1 LINE L1 -5199 871 258 * 1384 280 99 12 chr15 49663082 49663596 -36032158 + L2 LINE L2 2763 3313 0 1923 173 0 16 chr15 49664079 49664386 -36031368 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr15 49664482 49664504 -36031250 + AT_rich Low_complexity Low_complexity 1 22 0 236 309 99 0 chr15 49666147 49666228 -36029526 - MIR SINE MIR -173 89 1 2233 95 3 7 chr15 49666335 49666630 -36029124 - AluSq SINE Alu -19 294 1 2031 125 0 26 chr15 49666786 49667091 -36028663 - AluSx SINE Alu -14 298 2 1708 130 58 49 chr15 49667392 49667700 -36028054 + AluSx SINE Alu 1 311 -1 227 255 113 0 chr15 49668078 49668219 -36027535 - L1ME LINE L1 -216 5905 5749 308 299 0 43 chr15 49668302 49668419 -36027335 + L1ME3A LINE L1 998 1109 -5010 269 287 48 39 chr15 49668427 49668657 -36027097 + L1ME3A LINE L1 1186 1417 -4893 2903 244 115 66 chr15 49668680 49669724 -36026030 + L1ME3A LINE L1 2236 3228 -2925 2268 99 0 0 chr15 49669724 49670017 -36025737 + AluSg SINE Alu 5 297 -13 2903 244 115 66 chr15 49670017 49672711 -36023043 + L1ME3A LINE L1 3228 6153 0 533 279 38 22 chr15 49673565 49673748 -36022006 - L2 LINE L2 -6 3307 3122 305 362 36 45 chr15 49673904 49674125 -36021629 - L2 LINE L2 -365 2949 2731 468 0 0 0 chr15 49674701 49674753 -36021001 + (TG)n Simple_repeat Simple_repeat 1 52 0 227 291 0 38 chr15 49674797 49674876 -36020878 - MIR3 SINE MIR -9 199 124 6576 208 9 9 chr15 49724887 49726376 -35969378 - L1 LINE L1 -984 5162 3674 249 311 14 14 chr15 49727018 49727092 -35968662 - MER5A DNA MER1_type -56 133 60 507 204 73 161 chr15 49727125 49727399 -35968355 - MER112 DNA MER1_type -3 257 8 320 314 0 12 chr15 49727471 49727557 -35968197 + L2 LINE L2 3177 3261 -52 369 0 0 0 chr15 49727970 49728011 -35967743 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 94 0 0 chr15 49728515 49728547 -35967207 + (T)n Simple_repeat Simple_repeat 1 32 0 2157 59 65 17 chr15 49729503 49729793 -35965961 + AluY SINE Alu 1 304 -7 22749 86 9 6 chr15 49730027 49734045 -35961709 + L1PA7 LINE L1 2113 6141 -13 186 43 0 0 chr15 49734048 49734071 -35961683 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 881 242 32 14 chr15 49734189 49734408 -35961346 + MER58A DNA MER1_type 2 224 0 277 284 43 120 chr15 49734566 49734890 -35960864 + L2 LINE L2 2595 2893 -421 8582 112 12 17 chr15 49735168 49736972 -35958782 - L1P3 LINE L1 -3946 2515 713 921 318 93 51 chr15 49736972 49737077 -35958677 + L3 LINE CR1 183 282 -1295 2141 110 0 0 chr15 49737077 49737386 -35958368 + AluSc SINE Alu 1 309 0 921 318 93 51 chr15 49737386 49737849 -35957905 + L3 LINE CR1 282 776 -801 942 242 0 28 chr15 49737849 49738060 -35957694 + MER58C DNA MER1_type 1 205 -10 446 335 96 49 chr15 49738069 49738577 -35957177 + L3 LINE CR1 768 1358 -219 1902 138 7 7 chr15 49738641 49738932 -35956822 + AluJb SINE Alu 1 291 -21 552 246 99 63 chr15 49739069 49739412 -35956342 + MLT1I LTR MaLR 3 403 -6 237 254 102 0 chr15 49739447 49739506 -35956248 + MIR SINE MIR 30 94 -114 1734 76 0 0 chr15 49739662 49739887 -35955867 - MER4E LTR ERV1 -7 759 535 366 242 33 39 chr15 49739989 49740171 -35955583 - L1ME LINE L1 -5300 905 725 4534 128 12 34 chr15 49740311 49741045 -35954709 - MER50 LTR ERV1 -16 718 1 2091 107 0 10 chr15 49741479 49741777 -35953977 - AluSx SINE Alu -17 295 1 603 320 89 15 chr15 49742108 49742445 -35953309 - L1ME LINE L1 -5965 431 70 429 66 0 0 chr15 49742592 49742653 -35953101 + (TG)n Simple_repeat Simple_repeat 2 62 0 4988 125 50 46 chr15 49743020 49743977 -35951777 - L1MA8 LINE L1 -3 6288 5328 226 313 50 12 chr15 49744592 49744672 -35951082 - MLT1K LTR MaLR -246 342 260 542 242 159 13 chr15 49744692 49744849 -35950905 + MER5A DNA MER1_type 10 189 0 257 285 180 66 chr15 49744852 49745080 -35950674 - MLT1K LTR MaLR -332 256 3 207 186 0 0 chr15 49745168 49745211 -35950543 + (TG)n Simple_repeat Simple_repeat 2 44 0 1647 185 61 0 chr15 49745604 49745917 -35949837 - L1MC4 LINE L1 -1011 7031 6700 455 231 39 8 chr15 49746167 49746297 -35949457 - LTR37B LTR ERV1 -7 461 328 334 231 0 0 chr15 49746301 49746366 -35949388 + MER5A DNA MER1_type 125 189 0 2189 106 0 0 chr15 49746546 49746827 -35948927 + AluSc SINE Alu 1 284 -25 351 0 0 0 chr15 49746827 49746866 -35948888 + (CA)n Simple_repeat Simple_repeat 2 40 0 2189 106 0 0 chr15 49746866 49746885 -35948869 + AluSc SINE Alu 283 301 -8 22 0 0 0 chr15 49747195 49747217 -35948537 + AT_rich Low_complexity Low_complexity 1 22 0 206 164 14 41 chr15 49747335 49747408 -35948346 + (TA)n Simple_repeat Simple_repeat 1 71 0 1202 279 69 21 chr15 49747722 49748241 -35947513 - L2 LINE L2 -1 3312 2760 23 0 0 0 chr15 49748344 49748367 -35947387 + AT_rich Low_complexity Low_complexity 1 23 0 1110 241 32 81 chr15 49749062 49749633 -35946121 - L1ME2 LINE L1 -252 5912 5358 2439 53 0 3 chr15 49749646 49749964 -35945790 - AluY SINE Alu 0 317 1 196 366 149 19 chr15 49750496 49750657 -35945097 - L2 LINE L2 -342 2972 2791 505 238 53 106 chr15 49751374 49751677 -35944077 - L2 LINE L2 -592 2722 2436 21 36 0 0 chr15 49752835 49752863 -35942891 + AT_rich Low_complexity Low_complexity 1 28 0 2255 105 0 0 chr15 49753277 49753582 -35942172 - AluSx SINE Alu 0 305 1 7916 167 59 79 chr15 49753596 49755387 -35940367 + MER52A LTR ERV1 1 1755 0 500 298 29 23 chr15 49756619 49756790 -35938964 + MIR3 SINE MIR 17 188 -20 5934 80 19 1 chr15 49758983 49759809 -35935945 + L1MA1 LINE L1 5462 6302 0 22 56 0 0 chr15 49759809 49759845 -35935909 + AT_rich Low_complexity Low_complexity 1 36 0 722 244 33 63 chr15 49759919 49760317 -35935437 - L1MEc LINE L1 -3044 3085 2700 324 233 33 8 chr15 49760342 49760462 -35935292 - L1MEc LINE L1 -3645 2484 2362 331 276 0 0 chr15 49760462 49760538 -35935216 - L2 LINE L2 0 3313 3238 2065 143 76 67 chr15 49760634 49761133 -35934621 - L1MD3 LINE L1 0 8042 7552 456 254 80 45 chr15 49761250 49761451 -35934303 - L1MEc LINE L1 -4092 2218 2011 321 268 134 67 chr15 49761719 49762018 -35933736 - L1MEc LINE L1 -4550 1595 1261 2084 230 86 13 chr15 49762025 49762582 -35933172 + HsTC2 DNA Tc2 4 601 -1297 816 179 60 22 chr15 49762604 49762788 -35932966 + HsTC2 DNA Tc2 1281 1647 -251 1662 209 98 70 chr15 49762805 49763239 -35932515 - L1ME3 LINE L1 -7 6155 5700 808 172 0 0 chr15 49763239 49763367 -35932387 - FLAM_C SINE Alu -5 128 1 1662 209 98 70 chr15 49763367 49763491 -35932263 - L1ME3 LINE L1 -462 5700 5581 2394 44 0 0 chr15 49763507 49763801 -35931953 - L1PA4 LINE L1 -1 6154 5861 2121 40 0 0 chr15 49763801 49764098 -35931656 + L1P2 LINE L1 5222 5518 -636 1187 213 129 39 chr15 49764093 49764624 -35931130 - L1ME3 LINE L1 -573 5591 4978 * 1972 157 0 3 chr15 49764624 49764937 -35930817 - AluJo SINE Alu 0 312 1 1187 213 129 39 chr15 49764937 49765147 -35930607 - L1ME3 LINE L1 -1186 4978 4788 353 161 0 0 chr15 49765162 49765224 -35930530 - Tigger1 DNA MER2_type -655 1763 1702 363 238 106 16 chr15 49765252 49765462 -35930292 + HsTC2 DNA Tc2 1658 1898 0 474 273 45 54 chr15 49765486 49765517 -35930237 - L1MEc LINE L1 -4880 1239 1209 2005 135 11 0 chr15 49765517 49765852 -35929902 - AluSq SINE Alu 0 339 2 474 273 45 54 chr15 49765852 49766171 -35929583 - L1MEc LINE L1 -4910 1209 891 15487 118 21 15 chr15 49766198 49768579 -35927175 - Tigger1 DNA MER2_type 0 2418 23 279 279 222 32 chr15 49768585 49768954 -35926800 - L1MEc LINE L1 -5229 890 452 241 315 79 16 chr15 49768959 49769086 -35926668 - L1MEc LINE L1 -5846 273 139 2085 142 3 0 chr15 49769715 49770017 -35925737 - AluSx SINE Alu -9 303 1 30 109 0 0 chr15 49770151 49770279 -35925475 + AT_rich Low_complexity Low_complexity 1 128 0 524 245 98 33 chr15 49770566 49770836 -35924918 - MER110A LTR ERV1 0 468 202 664 232 166 36 chr15 49770852 49771184 -35924570 - HAL1 LINE L1 -442 2065 1691 586 196 0 0 chr15 49774200 49774312 -35921442 - L1PA13 LINE L1 -2580 4217 4106 * 5098 233 25 18 chr15 49774311 49775735 -35920019 - L1PA13 LINE L1 -3320 3477 2013 2106 140 0 6 chr15 49775735 49776049 -35919705 - AluSx SINE Alu 0 312 1 5098 233 25 18 chr15 49776049 49776686 -35919068 - L1PA13 LINE L1 -4784 2013 1382 1124 121 39 0 chr15 49777047 49777229 -35918525 + Tigger3b DNA MER2_type 280 468 -763 288 299 62 47 chr15 49777230 49777441 -35918313 - L1MEd LINE L1 -5637 482 269 256 357 98 0 chr15 49779393 49779505 -35916249 - L2 LINE L2 -1 3271 3149 22 35 0 0 chr15 49779741 49779770 -35915984 + AT_rich Low_complexity Low_complexity 1 29 0 503 178 59 0 chr15 49779783 49779884 -35915870 - L1ME2 LINE L1 -1 6163 6057 235 360 59 46 chr15 49779898 49780201 -35915553 + L2 LINE L2 2446 2752 -562 2176 79 11 4 chr15 49781065 49781343 -35914411 + AluSq SINE Alu 1 280 -33 834 86 0 0 chr15 49781345 49781461 -35914293 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 290 211 28 0 chr15 49781463 49781534 -35914220 + L1MC3 LINE L1 4590 4662 -1484 407 230 86 0 chr15 49781547 49781686 -35914068 + L1MC3 LINE L1 4590 4740 -1406 8823 168 39 21 chr15 49782391 49784627 -35911127 + L1MC3 LINE L1 4744 5402 -744 312 272 0 0 chr15 49784632 49784713 -35911041 + MLT1F1 LTR MaLR 44 124 -443 1802 100 130 54 chr15 49784732 49784841 -35910913 + L1MC3 LINE L1 7206 7305 -480 1538 186 13 42 chr15 49784841 49785152 -35910602 + AluJo SINE Alu 3 304 -8 1802 100 130 54 chr15 49785152 49785398 -35910356 + L1MC3 LINE L1 7305 7592 -193 881 154 82 0 chr15 49785398 49785580 -35910174 + L1MC2 LINE L1 6137 6333 -11 1802 100 130 54 chr15 49785580 49785592 -35910162 + L1MC3 LINE L1 7592 7602 -183 806 239 43 0 chr15 49786091 49786279 -35909475 + MIR SINE MIR 5 200 -62 425 262 0 9 chr15 49786451 49786558 -35909196 - MER103 DNA DNA -23 143 38 1240 240 54 32 chr15 49787198 49787639 -35908115 - L1MC4 LINE L1 -288 7754 7304 964 198 45 0 chr15 49787800 49787977 -35907777 + MER58A DNA MER1_type 38 222 -2 27 0 0 0 chr15 49788486 49788513 -35907241 + AT_rich Low_complexity Low_complexity 1 27 0 1895 136 3 24 chr15 49789146 49789441 -35906313 + AluSx SINE Alu 1 289 -23 26 50 0 0 chr15 49789591 49789631 -35906123 + AT_rich Low_complexity Low_complexity 1 40 0 305 296 61 38 chr15 49789661 49789793 -35905961 + MIR3 SINE MIR 52 186 -22 23 0 0 0 chr15 49789812 49789835 -35905919 + AT_rich Low_complexity Low_complexity 1 23 0 1362 266 19 27 chr15 49789936 49790346 -35905408 - MLT1I LTR MaLR 0 409 3 326 262 29 0 chr15 49790372 49790475 -35905279 + L1ME LINE L1 5535 5640 -481 400 197 15 131 chr15 49790637 49790836 -35904918 - L1M4c LINE L1 -5101 1271 978 1030 188 52 0 chr15 49791104 49791333 -35904421 - L1MA9 LINE L1 0 6312 6072 254 247 83 36 chr15 49792051 49792302 -35903452 - Charlie7 DNA MER1_type -1 2611 9 23 54 0 0 chr15 49792488 49792525 -35903229 + AT_rich Low_complexity Low_complexity 1 37 0 502 248 19 0 chr15 49792694 49792799 -35902955 + FLAM_A SINE Alu 1 107 -35 234 196 87 0 chr15 49792867 49792913 -35902841 + MIR SINE MIR 19 68 -140 2368 35 3 3 chr15 49793004 49793291 -35902463 + L1PA7 LINE L1 5868 6154 0 207 139 0 0 chr15 49793660 49793696 -35902058 + (T)n Simple_repeat Simple_repeat 1 36 0 838 223 38 0 chr15 49794405 49794562 -35901192 - FAM SINE Alu -9 166 4 22 35 0 0 chr15 49794956 49794985 -35900769 + AT_rich Low_complexity Low_complexity 1 29 0 478 200 0 83 chr15 49795038 49795086 -35900668 + MER105 DNA DNA 6 56 -148 441 203 277 7 chr15 49795086 49795234 -35900520 + MER5A DNA MER1_type 1 188 -1 478 200 0 83 chr15 49795234 49795305 -35900449 + MER105 DNA DNA 56 115 -89 24 0 0 0 chr15 49795607 49795631 -35900123 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr15 49796406 49796431 -35899323 + (TTA)n Simple_repeat Simple_repeat 3 27 0 44530 34 2 2 chr15 49796431 49802566 -35893188 - L1PA3 LINE L1 -18 6137 7 365 266 0 43 chr15 49802747 49802841 -35892913 + L2 LINE L2 3180 3269 -44 23 42 0 21 chr15 49803104 49803127 -35892627 + AT_rich Low_complexity Low_complexity 1 23 -24 921 220 102 40 chr15 49803127 49803450 -35892304 + MER2 DNA MER2_type 1 343 -1 23 42 0 21 chr15 49803450 49803474 -35892280 + AT_rich Low_complexity Low_complexity 23 47 0 9311 101 6 52 chr15 49803849 49805302 -35890452 - L1P LINE L1 -4751 1395 11 21 0 0 0 chr15 49805389 49805410 -35890344 + AT_rich Low_complexity Low_complexity 1 21 0 314 277 121 37 chr15 49805578 49805627 -35890127 - L1M4 LINE L1 -1103 5541 5498 2032 132 0 7 chr15 49805627 49805931 -35889823 - AluSx SINE Alu -10 302 1 314 277 121 37 chr15 49805931 49806170 -35889584 - L1M4 LINE L1 -1146 5498 5233 1849 170 0 0 chr15 49806247 49806559 -35889195 - AluJb SINE Alu 0 312 1 241 254 104 22 chr15 49808186 49808320 -35887434 + L2 LINE L2 1930 2074 -1240 231 185 15 0 chr15 49808597 49808662 -35887092 - L1M4 LINE L1 -3221 3423 3358 5845 205 93 32 chr15 49808680 49809253 -35886501 - L1M4 LINE L1 -3341 3303 2766 2222 119 0 0 chr15 49809253 49809548 -35886206 + AluSx SINE Alu 1 295 -17 5845 205 93 32 chr15 49809548 49811396 -35884358 - L1M4 LINE L1 -3878 2766 633 204 40 0 0 chr15 49811396 49811421 -35884333 + (TTAGGG)n Simple_repeat Simple_repeat 3 27 0 5845 205 93 32 chr15 49811421 49812086 -35883668 - L1M4 LINE L1 -6011 633 10 314 335 86 10 chr15 49812617 49812814 -35882940 + L2 LINE L2 2036 2247 -1067 364 281 61 82 chr15 49812874 49813105 -35882649 - L1M4 LINE L1 -1074 5072 4847 261 275 84 74 chr15 49813136 49813445 -35882309 - HAL1 LINE L1 -2149 358 47 2448 57 0 7 chr15 49813479 49813775 -35881979 - AluY SINE Alu -17 294 1 2090 119 37 0 chr15 49814648 49814943 -35880811 - AluSg SINE Alu -4 306 1 455 260 142 29 chr15 49815330 49815534 -35880220 - MIR SINE MIR 0 262 36 247 301 71 53 chr15 49815686 49815799 -35879955 + L2 LINE L2 3150 3264 -8 3651 98 21 21 chr15 49815941 49816115 -35879639 + L1PA13 LINE L1 5605 5778 -385 2013 98 8 0 chr15 49816115 49816380 -35879374 + AluSx SINE Alu 40 306 -6 3651 98 21 21 chr15 49816380 49816764 -35878990 + L1PA13 LINE L1 5777 6163 0 321 283 68 85 chr15 49817044 49817221 -35878533 + L2 LINE L2 3134 3307 -6 225 259 0 0 chr15 49817423 49817481 -35878273 + L2 LINE L2 3214 3271 -1 186 43 0 0 chr15 49817487 49817510 -35878244 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 330 359 48 24 chr15 49818313 49818480 -35877274 - L2 LINE L2 0 3272 3102 328 70 18 18 chr15 49819415 49819472 -35876282 + (TA)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr15 49821018 49821040 -35874714 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 49821845 49821868 -35873886 + AT_rich Low_complexity Low_complexity 1 23 0 292 265 7 44 chr15 49821987 49822123 -35873631 + A-rich Low_complexity Low_complexity 3 133 0 1105 181 68 0 chr15 49823483 49823688 -35872066 - MER20 DNA MER1_type 0 219 1 414 370 119 28 chr15 49824611 49825175 -35870579 - L2 LINE L2 -56 3216 2555 331 350 65 52 chr15 49826267 49826650 -35869104 + L1ME LINE L1 2436 2823 -3323 1882 103 58 14 chr15 49826849 49827141 -35868613 - MER1B DNA MER1_type 0 339 35 714 260 152 22 chr15 49827247 49827608 -35868146 + L1MC4a LINE L1 5523 5930 -1878 606 304 45 37 chr15 49828161 49828394 -35867360 + L1ME LINE L1 4233 4473 -1673 1839 136 3 21 chr15 49828394 49828701 -35867053 + AluJb SINE Alu 1 302 0 606 304 45 37 chr15 49828701 49828848 -35866906 + L1ME LINE L1 4473 4617 -1529 604 293 76 26 chr15 49829063 49829562 -35866192 + L1ME LINE L1 5273 5791 -330 4675 146 11 66 chr15 49830178 49831016 -35864738 - MER21B LTR ERV1 -71 792 1 709 299 52 39 chr15 49831379 49832433 -35863321 + L1MEd LINE L1 595 1622 -868 1384 126 45 14 chr15 49832517 49832739 -35863015 + MER30 DNA MER1_type 2 230 0 398 333 50 27 chr15 49832748 49833006 -35862748 + L1MEd LINE L1 1791 2054 -4256 1570 211 83 59 chr15 49833085 49833578 -35862176 - MLT1H LTR MaLR -4 545 41 1760 273 77 24 chr15 49833606 49833662 -35862092 + L1MEd LINE L1 2112 2164 -3965 2261 121 0 0 chr15 49833662 49833967 -35861787 + AluSx SINE Alu 1 305 -7 1760 273 77 24 chr15 49833967 49834863 -35860891 + L1MEd LINE L1 2164 3114 -3015 3514 130 53 2 chr15 49834988 49837209 -35858545 + L1P3 LINE L1 10 2625 -3836 227 56 56 0 chr15 49837209 49837245 -35858509 + A-rich Low_complexity Low_complexity 2 39 0 3514 130 53 2 chr15 49837245 49837609 -35858145 + L1P3 LINE L1 2625 2969 -3492 * 5735 69 7 1 chr15 49837601 49838445 -35857309 - L1PA7 LINE L1 -110 6044 5195 187 208 0 83 chr15 49840228 49840276 -35855478 - L2 LINE L2 -17 3255 3212 574 309 107 22 chr15 49840715 49840987 -35854767 - L3 LINE CR1 -64 1513 1219 736 358 112 19 chr15 49840998 49841417 -35854337 - L2 LINE L2 -1 3271 2814 688 150 0 63 chr15 49841571 49841698 -35854056 + MER2 DNA MER2_type 11 129 -216 791 126 166 0 chr15 49841798 49841949 -35853805 + MER2 DNA MER2_type 170 345 0 329 285 159 41 chr15 49842025 49842494 -35853260 + L1MEd LINE L1 3515 3927 -2202 2189 213 77 71 chr15 49842494 49842747 -35853007 + MLT1E1 LTR MaLR 2 252 -402 2534 60 0 3 chr15 49842747 49843048 -35852706 + AluY SINE Alu 1 300 -11 2189 213 77 71 chr15 49843048 49843443 -35852311 + MLT1E1 LTR MaLR 252 654 0 329 285 159 41 chr15 49843443 49844095 -35851659 + L1MEd LINE L1 3927 4757 -1372 315 252 63 59 chr15 49844117 49844355 -35851399 + L1MEd LINE L1 4890 5128 -1001 472 221 0 0 chr15 49844395 49844481 -35851273 - FLAM_A SINE Alu -41 101 16 196 381 43 14 chr15 49844487 49844626 -35851128 - L2 LINE L2 -1423 1891 1749 218 343 0 30 chr15 49844646 49844745 -35851009 + MIR SINE MIR 20 115 -93 310 241 197 29 chr15 49844991 49845128 -35850626 - MIR3 SINE MIR -12 196 37 224 324 29 0 chr15 49845371 49845439 -35850315 + MIR SINE MIR 79 148 -114 1664 181 14 0 chr15 49846715 49846997 -35848757 + AluJb SINE Alu 1 286 -26 28582 114 14 73 chr15 49847097 49847382 -35848372 - L1P3 LINE L1 -361 5811 5511 254 150 0 0 chr15 49847382 49847422 -35848332 + Alu SINE Alu 243 282 -20 28582 114 14 73 chr15 49847422 49853277 -35842477 - L1P3 LINE L1 -661 5511 4 11169 110 6 13 chr15 49853283 49855378 -35840376 + L1P4 LINE L1 3574 5650 -518 327 192 74 2 chr15 49855711 49855817 -35839937 - L1ME2 LINE L1 0 6162 6052 5844 153 26 9 chr15 49855884 49857891 -35837863 - L1PA16 LINE L1 -2 6164 4125 2243 103 3 6 chr15 49857951 49858262 -35837492 - AluSx SINE Alu -2 310 1 2073 146 0 29 chr15 49858265 49858581 -35837173 - AluJo SINE Alu -5 307 1 237 279 123 65 chr15 49859337 49859491 -35836263 + L3 LINE CR1 1369 1531 -46 182 91 30 0 chr15 49859956 49859989 -35835765 + GA-rich Low_complexity Low_complexity 2 35 0 2550 68 0 0 chr15 49861018 49861325 -35834429 - AluY SINE Alu -4 307 1 355 270 162 0 chr15 49861377 49861488 -35834266 + MIR SINE MIR 118 246 -16 412 288 87 22 chr15 49862806 49862990 -35832764 - MIR SINE MIR -1 261 66 1447 228 21 113 chr15 49863271 49863793 -35831961 - L2 LINE L2 -633 2681 2208 2173 92 0 4 chr15 49863865 49864175 -35831579 - AluY SINE Alu 0 309 1 291 240 0 30 chr15 49864185 49864285 -35831469 + T-rich Low_complexity Low_complexity 6 102 0 21 0 0 0 chr15 49864447 49864468 -35831286 + AT_rich Low_complexity Low_complexity 1 21 0 2465 94 0 0 chr15 49865200 49865507 -35830247 - AluSc SINE Alu -2 307 1 790 294 94 21 chr15 49865564 49866007 -35829747 - L1ME2 LINE L1 -218 5952 5478 1349 206 182 5 chr15 49866099 49866516 -35829238 - L1ME2 LINE L1 0 6233 5743 3418 224 113 44 chr15 49866517 49867713 -35828041 - L1ME2 LINE L1 -528 5705 4592 2269 233 71 16 chr15 49867713 49868138 -35827616 - MER82 DNA MER2_type -1 652 181 189 0 0 0 chr15 49868138 49868159 -35827595 + (TA)n Simple_repeat Simple_repeat 2 22 0 2269 233 71 16 chr15 49868159 49868350 -35827404 - MER82 DNA MER2_type -472 181 2 3418 224 113 44 chr15 49868350 49868647 -35827107 - L1ME2 LINE L1 -1641 4592 4317 2019 152 10 7 chr15 49868647 49868957 -35826797 - AluJb SINE Alu -1 311 1 3418 224 113 44 chr15 49868957 49869284 -35826470 - L1ME2 LINE L1 -1916 4317 3759 327 267 0 0 chr15 49869345 49869431 -35826323 - L1ME2 LINE L1 -3212 3003 2918 423 242 15 53 chr15 49869431 49869563 -35826191 + LTR52 LTR ERVL 292 418 -3 832 268 66 10 chr15 49869601 49870011 -35825743 - L1ME2 LINE L1 -3529 2686 2254 538 265 26 83 chr15 49870058 49870360 -35825394 - L1ME2 LINE L1 -4163 2233 1949 7672 154 20 12 chr15 49870388 49871198 -35824556 - L1MA5 LINE L1 0 6300 5498 297 0 0 0 chr15 49871198 49871231 -35824523 + (TG)n Simple_repeat Simple_repeat 2 34 0 7672 154 20 12 chr15 49871231 49872498 -35823256 - L1MA5 LINE L1 -802 5498 4203 1437 152 46 106 chr15 49872498 49872827 -35822927 + AluJo SINE Alu 1 309 -3 7672 154 20 12 chr15 49872827 49873208 -35822546 - L1MA5 LINE L1 -2097 4203 3827 342 354 10 40 chr15 49874333 49874488 -35821266 - L1ME2 LINE L1 -4576 1820 1671 2151 121 3 25 chr15 49874488 49874802 -35820952 - AluSg SINE Alu -3 307 1 342 354 10 40 chr15 49874802 49874844 -35820910 - L1ME2 LINE L1 -4725 1671 1629 235 186 0 133 chr15 49875251 49875364 -35820390 - HAL1 LINE L1 -1404 1103 1006 260 287 58 0 chr15 49875393 49875480 -35820274 + L2 LINE L2 3180 3271 -42 2013 149 0 0 chr15 49875484 49875766 -35819988 + AluSx SINE Alu 1 282 -30 378 308 130 0 chr15 49875870 49876055 -35819699 + Tigger8 DNA MER2_type 2 210 -456 496 146 13 106 chr15 49876191 49876342 -35819412 + Tigger8 DNA MER2_type 446 582 -84 416 121 111 40 chr15 49876680 49876779 -35818975 + L1MA5 LINE L1 6193 6298 -2 241 314 98 13 chr15 49876797 49876950 -35818804 + MER5A DNA MER1_type 12 177 -12 1933 153 56 11 chr15 49878495 49878854 -35816900 + THE1C LTR MaLR 1 375 0 318 309 42 42 chr15 49878989 49879206 -35816548 + L1MC4 LINE L1 6785 7001 -1041 1675 203 34 6 chr15 49879622 49879976 -35815778 - MLT1A1 LTR MaLR 0 365 2 542 298 34 34 chr15 49880888 49881066 -35814688 + MER5B DNA MER1_type 1 178 0 450 0 0 0 chr15 49881318 49881368 -35814386 + (TG)n Simple_repeat Simple_repeat 2 51 0 408 233 111 66 chr15 49881661 49881748 -35814006 + L1M4 LINE L1 2753 2835 -3311 2128 221 81 14 chr15 49881748 49882231 -35813523 + LTR40a LTR ERVL 1 515 -4 408 233 111 66 chr15 49882231 49882550 -35813204 + L1M4 LINE L1 2835 3177 -2969 1847 230 85 52 chr15 49882554 49883097 -35812657 - LTR9 LTR ERV1 0 612 52 232 239 104 55 chr15 49883097 49883298 -35812456 + L1M4 LINE L1 3180 3390 -2756 659 156 71 99 chr15 49883586 49883798 -35811956 + MER106A DNA MER1_type 30 235 -1 240 159 0 0 chr15 49883809 49883853 -35811901 + L1M4 LINE L1 3595 3638 -2508 214 283 17 0 chr15 49883890 49883950 -35811804 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 699 310 30 10 chr15 49884061 49884358 -35811396 + L1MEc LINE L1 67 369 -6027 2635 217 31 31 chr15 49884482 49885388 -35810366 + L1MEc LINE L1 2006 2910 -3305 234 0 0 0 chr15 49885388 49885414 -35810340 + (CA)n Simple_repeat Simple_repeat 1 26 0 1930 177 0 0 chr15 49885421 49885731 -35810023 + AluJb SINE Alu 1 310 -2 2635 217 31 31 chr15 49885731 49885778 -35809976 + L1MEc LINE L1 2915 2935 -3280 1703 250 38 41 chr15 49885832 49886227 -35809527 + L1MEc LINE L1 3112 3574 -2641 1848 177 0 16 chr15 49886227 49886532 -35809222 + AluJo SINE Alu 1 300 -12 1703 250 38 41 chr15 49886532 49886750 -35809004 + L1MEc LINE L1 3574 3791 -2424 2112 171 36 13 chr15 49886750 49887137 -35808617 + MSTD LTR MaLR 1 396 0 763 236 79 0 chr15 49887139 49887317 -35808437 - LTR47A LTR ERVL 0 452 261 582 304 29 10 chr15 49887569 49887773 -35807981 + L1MEc LINE L1 3787 3994 -2221 477 195 136 30 chr15 49888574 49888743 -35807011 - MER117 DNA MER1_type -10 187 1 364 277 0 0 chr15 49889423 49889506 -35806248 + MIR3 SINE MIR 122 204 -4 273 338 63 28 chr15 49890508 49890650 -35805104 - L2 LINE L2 -2 3270 3124 991 172 0 0 chr15 49890802 49890959 -35804795 - FAM SINE Alu -3 46 1 1760 158 10 17 chr15 49891298 49891596 -35804158 - AluJo SINE Alu -16 296 1 278 268 27 27 chr15 49891787 49891899 -35803855 - MIR SINE MIR -58 204 93 1550 270 67 34 chr15 49892211 49893082 -35802672 - L2 LINE L2 -74 3239 2331 477 0 0 0 chr15 49894636 49894689 -35801065 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1075 146 0 0 chr15 49894692 49894843 -35800911 - FRAM SINE Alu -30 146 1 2908 190 7 38 chr15 49895045 49895625 -35800129 + MER68 LTR ERV1 1 562 0 8376 214 42 28 chr15 49897211 49897498 -35798256 + L1P LINE L1 2926 3208 -2938 788 39 10 0 chr15 49897498 49897602 -35798152 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 8376 214 42 28 chr15 49897602 49899426 -35796328 + L1P LINE L1 3208 5065 -1081 1073 138 21 21 chr15 49899427 49899616 -35796138 + L1PA16 LINE L1 5972 6160 -6 399 298 86 53 chr15 49900317 49900619 -35795135 + L2 LINE L2 1467 1778 -1536 212 256 128 0 chr15 49900658 49900744 -35795010 + L2 LINE L2 2929 3025 -288 2546 143 24 7 chr15 49900758 49901177 -35794577 - MSTB LTR MaLR 0 426 1 451 287 0 45 chr15 49901206 49901363 -35794391 + L2 LINE L2 3162 3311 -2 454 286 32 109 chr15 49901364 49901520 -35794234 - MIR SINE MIR 0 262 136 1620 197 0 23 chr15 49901520 49901819 -35793935 + AluJo SINE Alu 1 292 -20 454 286 32 109 chr15 49901819 49901945 -35793809 - MIR SINE MIR -126 136 2 723 304 35 14 chr15 49902367 49902712 -35793042 + LTR16C LTR ERVL 137 488 -3 192 267 0 0 chr15 49902907 49902952 -35792802 - MIR SINE MIR -63 145 101 214 351 11 0 chr15 49902991 49903085 -35792669 + MIR SINE MIR 162 256 -6 655 231 0 8 chr15 49904215 49904345 -35791409 + MER94 DNA DNA 6 134 0 8653 21 0 0 chr15 49904771 49906521 -35789233 + L1PA2 LINE L1 4401 6150 -5 1941 153 0 3 chr15 49907473 49907768 -35787986 + AluJb SINE Alu 1 294 -18 195 42 0 0 chr15 49907896 49907920 -35787834 + (TA)n Simple_repeat Simple_repeat 2 25 0 1406 130 14 195 chr15 49908384 49908753 -35787001 - AluJb SINE Alu 0 302 1 22 0 0 0 chr15 49908757 49908779 -35786975 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr15 49909022 49909058 -35786696 + AT_rich Low_complexity Low_complexity 1 36 0 1481 242 37 22 chr15 49909404 49909867 -35785887 - L1MDb LINE L1 -3435 2971 2502 1570 167 19 15 chr15 49909873 49910137 -35785617 + AluJb SINE Alu 2 266 -46 1349 223 42 50 chr15 49910298 49910836 -35784918 + MLT1E LTR MaLR 10 591 -2 1861 159 3 19 chr15 49910886 49911201 -35784553 + AluJb SINE Alu 1 310 -2 207 0 0 0 chr15 49911204 49911227 -35784527 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2722 228 96 65 chr15 49911227 49911891 -35783863 - L1MDb LINE L1 -4008 2398 1756 2170 112 7 3 chr15 49911891 49912194 -35783560 - AluSx SINE Alu -1 311 8 2722 228 96 65 chr15 49912194 49912739 -35783015 - L1MDb LINE L1 -4650 1756 1166 2095 137 6 13 chr15 49912739 49913054 -35782700 - AluSq SINE Alu 0 313 1 2722 228 96 65 chr15 49913054 49913451 -35782303 - L1MDb LINE L1 -5240 1166 783 435 268 115 56 chr15 49914016 49914426 -35781328 - L1M4 LINE L1 -2789 3357 2924 21 71 0 0 chr15 49914641 49914683 -35781071 + AT_rich Low_complexity Low_complexity 1 42 0 300 327 30 0 chr15 49916024 49916125 -35779629 - L2 LINE L2 -1 3271 3168 1631 190 15 12 chr15 49916226 49916553 -35779201 - MER4D LTR ERV1 -49 854 527 1580 159 58 0 chr15 49916569 49916846 -35778908 - MER49 LTR ERV1 -630 293 1 665 223 171 33 chr15 49916846 49917057 -35778697 - MER21A LTR ERV1 -216 715 476 781 179 32 150 chr15 49917106 49917352 -35778402 - MER21B LTR ERV1 -629 234 18 465 259 210 35 chr15 49918339 49918687 -35777067 - MLT1I LTR MaLR 0 409 1 216 293 82 41 chr15 49918702 49918849 -35776905 - MIR SINE MIR -109 153 1 645 130 7 39 chr15 49919003 49919157 -35776597 + (GAAA)n Simple_repeat Simple_repeat 4 152 0 315 217 14 0 chr15 49919572 49919641 -35776113 - MIR SINE MIR -118 144 75 2191 100 0 10 chr15 49920430 49920764 -35774990 + AluSc SINE Alu 1 309 0 219 222 42 42 chr15 49922084 49922156 -35773598 + L2 LINE L2 2695 2766 -548 187 299 95 34 chr15 49922392 49922539 -35773215 + L2 LINE L2 2854 3009 -263 275 216 41 113 chr15 49923998 49924095 -35771659 + MER94 DNA DNA 13 102 -32 354 301 80 12 chr15 49924226 49924389 -35771365 + L3 LINE CR1 1321 1494 -83 1773 166 0 32 chr15 49924679 49924992 -35770762 + AluJo SINE Alu 1 303 -9 495 186 76 8 chr15 49925135 49925253 -35770501 + L1MD3 LINE L1 7859 7984 -11 581 98 10 29 chr15 49925602 49925704 -35770050 - L1MB4 LINE L1 0 6180 6081 224 333 88 26 chr15 49926367 49926481 -35769273 + MIR SINE MIR 30 150 -58 24 96 0 0 chr15 49927381 49927454 -35768300 + GC_rich Low_complexity Low_complexity 1 73 0 29 47 0 0 chr15 49927525 49927568 -35768186 + GC_rich Low_complexity Low_complexity 1 43 0 226 261 101 25 chr15 49928483 49928602 -35767152 - MIR3 SINE MIR 0 208 81 312 204 49 14 chr15 49929609 49929756 -35765998 - L2 LINE L2 -9 3304 3173 222 274 198 6 chr15 49930896 49931053 -35764701 - MIR SINE MIR -70 192 6 205 380 0 0 chr15 49931129 49931208 -35764546 + MER5A DNA MER1_type 111 189 0 324 256 78 31 chr15 49932999 49933128 -35762626 + MIR SINE MIR 8 142 -120 188 253 199 34 chr15 49933601 49933747 -35762007 + MIR SINE MIR 20 189 -73 565 293 58 5 chr15 49934036 49934224 -35761530 - MIR SINE MIR -33 229 32 286 258 97 0 chr15 49935140 49935233 -35760521 + MIR SINE MIR 52 153 -109 1194 201 46 10 chr15 49935946 49936251 -35759503 - MER58B DNA MER1_type -2 339 1 22 56 0 0 chr15 49936477 49936513 -35759241 + AT_rich Low_complexity Low_complexity 1 36 0 1636 121 3 104 chr15 49936578 49936885 -35758869 + AluJo SINE Alu 1 276 -36 309 226 19 9 chr15 49936892 49936998 -35758756 + GA-rich Low_complexity Low_complexity 4 110 0 206 277 89 10 chr15 49937856 49937957 -35757797 + MIR3 SINE MIR 10 118 -90 2874 193 79 16 chr15 49937965 49938598 -35757156 + L1MDa LINE L1 648 1320 -5220 5970 142 32 6 chr15 49938619 49939876 -35755878 - L1MA7 LINE L1 0 6291 4997 1561 159 45 80 chr15 49939875 49940086 -35755668 + L1MDa LINE L1 1305 1495 -5045 * 2075 120 0 0 chr15 49940086 49940360 -35755394 + AluSx SINE Alu 24 297 -15 1561 159 45 80 chr15 49940360 49940588 -35755166 + L1MDa LINE L1 1495 1729 -4811 303 280 131 0 chr15 49940561 49940746 -35755008 + L1ME4a LINE L1 5075 5277 -1263 * 1955 151 3 3 chr15 49942005 49942304 -35753450 - AluJb SINE Alu -13 299 1 705 251 38 24 chr15 49942360 49942571 -35753183 + MIR SINE MIR 46 259 -3 2466 59 0 0 chr15 49942574 49942862 -35752892 - AluY SINE Alu -23 288 1 252 316 2 3 chr15 49942885 49942989 -35752765 + MIR SINE MIR 55 156 -68 34 24 0 0 chr15 49943097 49943138 -35752616 + AT_rich Low_complexity Low_complexity 1 41 0 346 306 114 48 chr15 49943310 49943469 -35752285 + L1ME4a LINE L1 5296 5443 -678 947 284 112 27 chr15 49943469 49943881 -35751873 + MLT1J2 LTR MaLR 1 447 -3 346 306 114 48 chr15 49943881 49944107 -35751647 + L1ME4a LINE L1 5443 5706 -415 396 231 122 95 chr15 49944110 49944447 -35751307 + L1ME4a LINE L1 5748 6093 -28 239 133 22 0 chr15 49946357 49946402 -35749352 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1278 13 0 3 chr15 49946481 49946637 -35749117 - L1PA2 LINE L1 -558 5597 5459 5011 14 7 0 chr15 49946637 49947194 -35748560 + L1PA2 LINE L1 5588 6154 -1 225 0 0 0 chr15 49947811 49947836 -35747918 + (T)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr15 49948483 49948504 -35747250 + (GGGA)n Simple_repeat Simple_repeat 2 22 0 499 211 10 55 chr15 49949269 49949460 -35746294 + MER112 DNA MER1_type 5 259 -1 373 217 112 28 chr15 49949460 49949594 -35746160 + Charlie7 DNA MER1_type 431 576 -2036 248 160 20 160 chr15 49949604 49949704 -35746050 - Charlie7 DNA MER1_type 0 2612 2527 2285 129 28 16 chr15 49949881 49950245 -35745509 - THE1C LTR MaLR 0 375 8 195 180 0 98 chr15 49950284 49950345 -35745409 + L2 LINE L2 2443 2497 -817 217 304 17 26 chr15 49950446 49950561 -35745193 + L2 LINE L2 2949 3062 -210 276 53 0 0 chr15 49950680 49950718 -35745036 + (TG)n Simple_repeat Simple_repeat 2 39 0 290 133 219 86 chr15 49950749 49950854 -35744900 - MIR SINE MIR -73 189 71 2223 156 48 36 chr15 49951966 49952383 -35743371 - MSTB1 LTR MaLR -4 428 7 323 329 32 36 chr15 49952403 49952504 -35743250 - MIR SINE MIR -12 250 150 1795 184 48 16 chr15 49952504 49952879 -35742875 - L1MB7 LINE L1 0 6184 5798 323 329 32 36 chr15 49952879 49952996 -35742758 - MIR SINE MIR -112 150 33 208 205 0 0 chr15 49953039 49953078 -35742676 - L2 LINE L2 -19 3253 3215 1531 135 5 0 chr15 49953640 49953855 -35741899 + AluSq SINE Alu 1 216 -97 241 275 0 66 chr15 49954028 49954119 -35741635 - MIR SINE MIR -73 189 105 37 39 0 0 chr15 49954298 49954349 -35741405 + AT_rich Low_complexity Low_complexity 1 51 0 881 124 14 35 chr15 49955508 49955653 -35740101 - FRAM SINE Alu 0 176 35 310 212 20 0 chr15 49957631 49957730 -35738024 + GA-rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr15 49958262 49958283 -35737471 + AT_rich Low_complexity Low_complexity 1 21 0 1366 167 0 32 chr15 49959014 49959260 -35736494 - AluJo SINE Alu -6 306 69 236 254 0 17 chr15 49959286 49959345 -35736409 + CT-rich Low_complexity Low_complexity 3 60 0 1871 143 13 20 chr15 49959513 49959814 -35735940 + AluJb SINE Alu 11 309 -3 645 237 29 17 chr15 49960593 49960766 -35734988 + MIR SINE MIR 8 182 -80 1246 68 0 0 chr15 49960858 49961004 -35734750 - AluY SINE Alu -13 298 153 2309 94 0 10 chr15 49961069 49961367 -35734387 - AluSx SINE Alu -17 295 1 729 206 185 14 chr15 49962706 49962982 -35732772 - L2 LINE L2 0 3313 2991 415 160 28 66 chr15 49963308 49963414 -35732340 - MIR SINE MIR -83 179 78 351 246 0 0 chr15 49963763 49963828 -35731926 - MER3 DNA MER1_type -144 65 1 2332 103 3 0 chr15 49963959 49964260 -35731494 + AluSx SINE Alu 1 302 -10 298 326 28 7 chr15 49966333 49966474 -35729280 - MIR SINE MIR -70 192 49 2717 119 41 5 chr15 49966888 49967301 -35728453 - MSTA LTR MaLR 0 428 1 1053 261 106 21 chr15 49967394 49967781 -35727973 - LTR33 LTR ERVL -57 464 45 2177 107 3 23 chr15 49968074 49968382 -35727372 - AluSq SINE Alu -11 302 1 557 252 7 7 chr15 49968564 49968699 -35727055 + L2 LINE L2 3177 3311 -2 14192 192 43 38 chr15 49969099 49969773 -35725981 - L1MA6 LINE L1 -160 7559 6890 2340 105 3 0 chr15 49969773 49970077 -35725677 - AluSx SINE Alu -7 305 1 14192 192 43 38 chr15 49970077 49974894 -35720860 - L1MA6 LINE L1 -829 6890 2055 365 169 0 11 chr15 49976413 49976502 -35719252 + CT-rich Low_complexity Low_complexity 2 89 0 963 318 38 6 chr15 49977114 49977479 -35718275 - L1M2c LINE L1 -5163 1626 1250 1396 308 84 22 chr15 49977834 49978432 -35717322 - L1M2c LINE L1 -6152 637 3 1076 228 23 0 chr15 49978852 49979071 -35716683 - MER58A DNA MER1_type 0 224 1 26 64 0 0 chr15 49980058 49980105 -35715649 + AT_rich Low_complexity Low_complexity 1 47 0 2138 226 76 13 chr15 49980477 49981235 -35714519 + L1ME3 LINE L1 5023 5828 -334 6064 228 52 83 chr15 49981235 49981519 -35714235 + L1ME3 LINE L1 42 333 -6063 1910 132 57 0 chr15 49981519 49981800 -35713954 + AluSq SINE Alu 1 297 -16 6064 228 52 83 chr15 49981800 49983689 -35712065 + L1ME3 LINE L1 333 2148 -4248 2180 96 4 0 chr15 49983690 49983961 -35711793 + AluSx SINE Alu 20 291 -21 1652 230 87 7 chr15 49983974 49984305 -35711449 + L1ME3 LINE L1 4566 4946 -1269 186 43 0 0 chr15 49984305 49984328 -35711426 + (TA)n Simple_repeat Simple_repeat 1 23 0 1652 230 87 7 chr15 49984328 49984457 -35711297 + L1ME3 LINE L1 4946 5063 -1152 4023 188 92 92 chr15 49984457 49985161 -35710593 + L1 LINE L1 3958 4664 -1482 273 75 0 0 chr15 49985161 49985201 -35710553 + (TA)n Simple_repeat Simple_repeat 2 41 0 4023 188 92 92 chr15 49985201 49985744 -35710010 + L1 LINE L1 4663 5205 -941 * 43893 29 23 1 chr15 49985735 49991747 -35704007 + L1PA2 LINE L1 6 6152 -3 183 42 0 0 chr15 49991751 49991775 -35703979 + (A)n Simple_repeat Simple_repeat 1 24 0 1133 190 14 0 chr15 49991775 49991996 -35703758 + L1ME3 LINE L1 5244 5467 -748 690 162 47 0 chr15 49992045 49992193 -35703561 + L1MA10 LINE L1 6177 6331 -3 1133 197 47 50 chr15 49992194 49992534 -35703220 + L1ME3 LINE L1 5893 6231 0 2488 118 6 8 chr15 49994617 49994982 -35700772 - THE1B LTR MaLR 0 364 1 836 228 76 0 chr15 49994982 49995193 -35700561 + MIR SINE MIR 29 255 -7 870 212 38 19 chr15 49995347 49995559 -35700195 - MER20 DNA MER1_type 0 219 4 474 319 88 0 chr15 49996041 49996245 -35699509 - MIR SINE MIR -10 252 31 259 263 211 0 chr15 49997361 49997456 -35698298 - L2 LINE L2 -20 3252 3138 482 284 47 14 chr15 49997548 49997696 -35698058 - MIR SINE MIR 0 262 110 215 298 0 0 chr15 49998281 49998338 -35697416 + L2 LINE L2 3186 3242 -30 666 246 0 0 chr15 49999538 49999672 -35696082 - MER94 DNA DNA 0 134 1 182 118 29 0 chr15 50000599 50000633 -35695121 + CT-rich Low_complexity Low_complexity 1 35 0 206 290 14 0 chr15 50000730 50000799 -35694955 - MIR SINE MIR -115 147 78 228 252 7 126 chr15 50000915 50000983 -35694771 - MER5A DNA MER1_type 0 189 145 2581 54 0 0 chr15 50000983 50001277 -35694477 + AluY SINE Alu 1 294 -17 228 252 7 126 chr15 50001277 50001351 -35694403 - MER5A DNA MER1_type -44 145 64 336 161 37 12 chr15 50001402 50001483 -35694271 - MER5A DNA MER1_type -45 144 62 336 368 66 0 chr15 50001923 50002089 -35693665 - MER5B DNA MER1_type -1 177 1 402 323 106 31 chr15 50003062 50003288 -35692466 - MIR SINE MIR -12 250 8 2267 123 0 3 chr15 50003487 50003796 -35691958 - AluSg SINE Alu -2 308 1 1850 146 29 0 chr15 50003894 50004174 -35691580 - AluSx SINE Alu -24 288 1 1961 120 54 65 chr15 50005145 50005301 -35690453 + THE1B LTR MaLR 1 157 -207 2457 49 0 13 chr15 50005301 50005605 -35690149 - AluY SINE Alu -11 300 1 1961 120 54 65 chr15 50005605 50005816 -35689938 + THE1B LTR MaLR 157 364 0 369 231 11 33 chr15 50006582 50006673 -35689081 + MER5A DNA MER1_type 11 99 -90 796 165 252 15 chr15 50007129 50007395 -35688359 + MER96B DNA MER1_type? 44 372 -45 376 279 18 0 chr15 50007459 50007570 -35688184 + MIR SINE MIR 34 146 -116 28 0 0 0 chr15 50007702 50007730 -35688024 + AT_rich Low_complexity Low_complexity 1 28 0 220 274 123 28 chr15 50008203 50008309 -35687445 - L2 LINE L2 0 3313 3198 396 200 187 39 chr15 50008490 50008645 -35687109 + MER5B DNA MER1_type 1 178 0 202 112 19 234 chr15 50008732 50008839 -35686915 - MER5A DNA MER1_type -16 173 90 201 250 0 0 chr15 50008864 50008904 -35686850 + MER5A DNA MER1_type 149 188 -1 430 290 80 0 chr15 50009047 50009185 -35686569 - MIR SINE MIR -87 175 27 250 306 47 65 chr15 50009431 50009601 -35686153 - L2 LINE L2 -86 3186 3020 459 259 109 0 chr15 50009769 50009916 -35685838 + MIR SINE MIR 87 249 -13 4630 140 63 22 chr15 50010582 50011404 -35684350 - L1MB3 LINE L1 -1 6182 5327 342 245 230 36 chr15 50012194 50012390 -35683364 + MIR SINE MIR 15 248 -14 185 368 53 0 chr15 50012457 50012571 -35683183 - MIR SINE MIR -79 183 64 237 284 0 45 chr15 50012909 50012997 -35682757 - L2 LINE L2 -2 3270 3187 260 324 133 13 chr15 50013257 50013572 -35682182 - L2 LINE L2 -71 3201 2849 2212 157 102 32 chr15 50013861 50014333 -35681421 - MLT1D LTR MaLR 0 505 1 357 223 75 11 chr15 50014618 50014712 -35681042 + MIR SINE MIR 51 150 -58 2231 115 23 0 chr15 50014861 50015166 -35680588 - AluSx SINE Alu 0 312 1 342 244 124 48 chr15 50015380 50015555 -35680199 + MIR SINE MIR 30 216 -46 249 333 0 0 chr15 50015658 50015742 -35680012 + (TG)n Simple_repeat Simple_repeat 1 84 0 182 235 139 43 chr15 50016950 50017065 -35678689 - MIR SINE MIR -117 145 20 1932 203 37 45 chr15 50017363 50017850 -35677904 + MLT1D LTR MaLR 23 505 0 276 297 33 0 chr15 50017959 50018050 -35677704 - MIR SINE MIR -166 96 3 240 294 143 24 chr15 50018501 50018627 -35677127 + MIR SINE MIR 90 230 -32 1912 144 24 21 chr15 50018664 50019003 -35676751 + MER2 DNA MER2_type 1 340 -4 410 302 82 0 chr15 50019787 50019969 -35675785 - MIR SINE MIR -5 257 61 395 226 278 0 chr15 50020175 50020308 -35675446 - MER91A DNA MER1_type -26 170 1 472 217 46 57 chr15 50022872 50023047 -35672707 - L1MC4a LINE L1 -1927 5881 5709 1771 119 48 4 chr15 50023668 50023920 -35671834 - AluSx SINE Alu -49 263 1 2005 123 3 13 chr15 50024909 50025210 -35670544 - AluSx SINE Alu -8 304 7 361 321 61 8 chr15 50025994 50026125 -35669629 - L2 LINE L2 -19 3253 3116 894 222 27 5 chr15 50026553 50026738 -35669016 + MER5A DNA MER1_type 1 189 0 352 260 42 0 chr15 50026840 50026936 -35668818 + MER5A DNA MER1_type 10 109 -80 3485 188 54 14 chr15 50027616 50028336 -35667418 - L1MB7 LINE L1 0 6184 5436 725 274 39 35 chr15 50028416 50028542 -35667212 - MIR SINE MIR -1 261 137 622 217 90 36 chr15 50028542 50028708 -35667046 - MER96 DNA MER1_type 0 175 1 725 274 39 35 chr15 50028708 50028840 -35666914 - MIR SINE MIR -125 137 2 551 226 145 13 chr15 50029747 50029906 -35665848 + MER5A DNA MER1_type 4 183 -6 378 61 0 0 chr15 50030124 50030173 -35665581 + (CA)n Simple_repeat Simple_repeat 2 50 0 270 288 12 0 chr15 50030527 50030607 -35665147 - MIR3 SINE MIR -2 206 126 644 182 220 0 chr15 50030912 50031044 -35664710 - MER63A DNA MER1_type 0 210 50 1293 90 16 17 chr15 50031120 50031314 -35664440 - MER30 DNA MER1_type 0 230 33 258 164 82 41 chr15 50032695 50032768 -35662986 - MLT1I LTR MaLR -26 383 308 341 248 172 14 chr15 50033096 50033108 -35662646 - MIR SINE MIR -32 230 221 2363 89 0 10 chr15 50033108 50033411 -35662343 - AluSc SINE Alu -9 300 1 341 248 172 14 chr15 50033411 50033543 -35662211 - MIR SINE MIR -41 221 63 226 200 0 0 chr15 50033992 50034032 -35661722 + MIR SINE MIR 153 192 -70 2795 174 68 15 chr15 50034730 50035259 -35660495 - MER68 LTR ERV1 -4 558 2 312 272 120 16 chr15 50035404 50035529 -35660225 + MIR SINE MIR 55 192 -70 2104 109 0 26 chr15 50036213 50036524 -35659230 - AluSx SINE Alu -9 303 1 490 113 0 0 chr15 50036537 50036617 -35659137 - AluS SINE Alu 0 309 230 190 349 94 38 chr15 50036691 50036797 -35658957 - L2 LINE L2 -51 3221 3110 1509 175 0 30 chr15 50037329 50037632 -35658122 + AluJo SINE Alu 13 306 -6 226 244 0 0 chr15 50038428 50038473 -35657281 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 323 259 26 69 chr15 50038485 50038601 -35657153 - L1MC4 LINE L1 -1339 6703 6593 183 184 0 0 chr15 50038738 50038776 -35656978 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 410 313 115 53 chr15 50038987 50039326 -35656428 - HAL1 LINE L1 -28 2479 2120 210 303 90 28 chr15 50039403 50039548 -35656206 + L2 LINE L2 3155 3308 -5 1416 179 72 4 chr15 50039662 50039941 -35655813 - AluJo SINE Alu -9 303 6 203 0 0 36 chr15 50040290 50040318 -35655436 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 263 312 44 54 chr15 50040669 50040862 -35654892 - MIR SINE MIR -10 252 59 889 273 82 4 chr15 50041961 50042192 -35653562 + MIR SINE MIR 6 254 -8 279 0 0 0 chr15 50042194 50042225 -35653529 + (CAT)n Simple_repeat Simple_repeat 2 32 0 1987 129 3 3 chr15 50042740 50043035 -35652719 - AluSx SINE Alu -17 295 1 396 261 15 37 chr15 50043044 50043178 -35652576 - L1ME4a LINE L1 -7 6114 5984 438 273 94 0 chr15 50043596 50043724 -35652030 + MIR3 SINE MIR 65 204 -4 351 268 115 26 chr15 50043802 50043946 -35651808 - MER5A DNA MER1_type -22 165 1 297 51 0 0 chr15 50044551 50044590 -35651164 + (CA)n Simple_repeat Simple_repeat 1 39 0 527 319 6 19 chr15 50044786 50044943 -35650811 + MER5A DNA MER1_type 35 189 0 673 258 143 54 chr15 50044997 50045225 -35650529 + MIR SINE MIR 19 262 0 355 292 124 0 chr15 50045323 50045436 -35650318 - MER5A DNA MER1_type 0 189 63 2292 93 0 0 chr15 50045520 50045831 -35649923 + AluSq SINE Alu 1 311 -2 21 0 0 0 chr15 50045831 50045852 -35649902 + AT_rich Low_complexity Low_complexity 1 21 0 1418 131 8 19 chr15 50047359 50047494 -35648260 + L1MD3 LINE L1 7731 7863 -132 2190 122 0 0 chr15 50047494 50047806 -35647948 - AluSx SINE Alu 0 312 1 1418 131 8 19 chr15 50047806 50047929 -35647825 + L1MD3 LINE L1 7863 7986 -9 1928 203 46 39 chr15 50048023 50048198 -35647556 + MLT1C LTR MaLR 6 178 -289 1954 85 7 4 chr15 50048198 50048468 -35647286 + AluSp SINE Alu 39 309 -4 1928 203 46 39 chr15 50048468 50048751 -35647003 + MLT1C LTR MaLR 178 467 0 831 211 17 6 chr15 50048915 50049090 -35646664 - MER5B DNA MER1_type 0 178 2 403 250 27 68 chr15 50049632 50049780 -35645974 - L1MC5 LINE L1 -45 7916 7775 530 266 34 63 chr15 50049826 50050033 -35645721 - MLT1K LTR MaLR 0 588 388 1671 212 27 61 chr15 50050104 50050148 -35645606 + MLT1C LTR MaLR 7 51 -416 1869 97 0 4 chr15 50050148 50050406 -35645348 + AluSp SINE Alu 1 257 -56 1671 212 27 61 chr15 50050406 50050838 -35644916 + MLT1C LTR MaLR 51 467 0 362 182 273 10 chr15 50051641 50051740 -35644014 - MER94 DNA DNA 0 134 10 932 255 65 84 chr15 50052055 50052285 -35643469 - MLT1I LTR MaLR 0 409 189 5035 70 11 40 chr15 50052285 50053010 -35642744 - L1PA12 LINE L1 0 6168 5465 932 255 65 84 chr15 50053010 50053194 -35642560 - MLT1I LTR MaLR -220 189 3 384 315 133 36 chr15 50053831 50054133 -35641621 - L2 LINE L2 -946 2368 2038 765 213 38 19 chr15 50054218 50054378 -35641376 + MLT1A2 LTR MaLR 1 163 -211 30105 113 12 70 chr15 50054491 50059802 -35635952 + L1P LINE L1 12 5010 -1136 813 209 85 15 chr15 50059802 50060003 -35635751 - MIR SINE MIR -29 233 19 210 265 108 0 chr15 50060009 50060092 -35635662 - L2 LINE L2 -1291 2023 1932 2328 198 15 27 chr15 50060445 50060970 -35634784 + L1ME2 LINE L1 5644 6162 -2 204 185 0 0 chr15 50060993 50061047 -35634707 + CT-rich Low_complexity Low_complexity 1 54 0 1466 178 41 12 chr15 50061130 50061450 -35634304 + L1 LINE L1 5004 5332 -814 844 91 0 0 chr15 50061450 50061560 -35634194 + AluSg SINE Alu 1 110 -200 215 314 45 32 chr15 50062427 50062583 -35633171 - L2 LINE L2 -557 2757 2600 209 326 227 0 chr15 50062577 50062709 -35633045 - MIR SINE MIR -2 260 99 * 1306 230 93 17 chr15 50062724 50063080 -35632674 - MSTD LTR MaLR -13 383 1 219 329 14 14 chr15 50063084 50063157 -35632597 - MIR SINE MIR -167 95 23 267 328 143 0 chr15 50063915 50064034 -35631720 + MIR SINE MIR 110 245 -17 1607 173 0 39 chr15 50064751 50065057 -35630697 + AluJo SINE Alu 1 294 -18 333 141 0 47 chr15 50066173 50066237 -35629517 - MER20 DNA MER1_type -1 218 158 479 97 61 0 chr15 50066239 50066353 -35629401 + (TG)n Simple_repeat Simple_repeat 1 121 0 242 255 0 0 chr15 50066366 50066417 -35629337 - MER20 DNA MER1_type -168 51 1 208 270 95 0 chr15 50067723 50067797 -35627957 + MIR SINE MIR 124 204 -58 234 368 0 0 chr15 50069222 50069298 -35626456 + MIR SINE MIR 28 103 -159 213 294 99 71 chr15 50069296 50069786 -35625968 - L2 LINE L2 -28 3285 2690 * 1974 114 0 37 chr15 50069786 50070083 -35625671 + AluSx SINE Alu 1 286 -26 213 294 99 71 chr15 50070083 50070149 -35625605 - L2 LINE L2 -623 2690 2627 475 287 5 51 chr15 50070925 50071120 -35624634 - MIR3 SINE MIR -7 201 16 671 237 21 38 chr15 50071434 50071620 -35624134 - MER5A DNA MER1_type 0 189 7 585 139 0 40 chr15 50072278 50072379 -35623375 - AluSp/q SINE Alu -8 305 209 1683 72 0 0 chr15 50072517 50072725 -35623029 - AluSx SINE Alu -104 208 1 2336 136 0 26 chr15 50073955 50074301 -35621453 + MER1B DNA MER1_type 1 337 0 267 119 186 0 chr15 50074308 50074367 -35621387 - LTR67 LTR ERVL -2 555 486 2026 141 0 0 chr15 50074913 50075225 -35620529 - AluSx SINE Alu 0 312 1 226 296 112 0 chr15 50075766 50075864 -35619890 + MIR SINE MIR 111 219 -43 1783 136 97 62 chr15 50076119 50076471 -35619283 + THE1B LTR MaLR 1 364 0 326 287 49 7 chr15 50076645 50076788 -35618966 + MIR SINE MIR 111 259 -3 299 176 15 15 chr15 50077025 50077093 -35618661 - MER116 DNA Mariner -8 72 5 889 279 77 48 chr15 50077135 50077669 -35618085 - L1MC4a LINE L1 -1906 5902 5360 1006 183 21 11 chr15 50077671 50077862 -35617892 - MLT1A2 LTR MaLR -11 363 171 950 169 12 23 chr15 50077898 50078070 -35617684 - MLT1A2 LTR MaLR -204 170 1 265 253 20 20 chr15 50078535 50078634 -35617120 + CT-rich Low_complexity Low_complexity 4 102 0 264 326 59 12 chr15 50079100 50079261 -35616493 + MIR3 SINE MIR 15 183 -63 1111 225 77 27 chr15 50079422 50079760 -35615994 - MLT1C LTR MaLR -3 464 110 207 320 39 0 chr15 50079974 50080052 -35615702 + L2 LINE L2 3191 3271 -1 397 268 109 19 chr15 50080205 50080400 -35615354 - MIR SINE MIR -1 261 46 3134 117 65 66 chr15 50080402 50080989 -35614765 + LTR12 LTR ERV1 57 2312 -126 246 211 56 28 chr15 50080989 50081060 -35614694 - MIR SINE MIR -176 86 14 432 100 0 43 chr15 50081226 50081296 -35614458 + ORSL DNA AcHobo 1 67 -208 285 53 0 26 chr15 50081344 50081382 -35614372 + ORSL DNA AcHobo 239 275 0 21 0 0 0 chr15 50081489 50081510 -35614244 + GC_rich Low_complexity Low_complexity 1 21 0 211 318 30 0 chr15 50081820 50081886 -35613868 + C-rich Low_complexity Low_complexity 3 70 0 190 276 69 35 chr15 50082527 50082614 -35613140 - L2 LINE L2 -3 3310 3221 2042 115 3 0 chr15 50083222 50083510 -35612244 - AluSx SINE Alu -23 289 1 597 253 20 0 chr15 50083510 50083656 -35612098 - MER46C DNA MER2_type -6 332 184 698 128 0 0 chr15 50083757 50083866 -35611888 + AluSc SINE Alu 201 309 0 5174 141 38 25 chr15 50083882 50084057 -35611697 + L1MA7 LINE L1 5324 5495 -796 1828 121 4 11 chr15 50084057 50084330 -35611424 + AluSx SINE Alu 39 309 -3 5174 141 38 25 chr15 50084330 50085110 -35610644 + L1MA7 LINE L1 5495 6291 0 506 252 0 15 chr15 50085216 50085347 -35610407 - LTR67 LTR ERVL 0 557 429 2542 111 3 13 chr15 50087059 50087438 -35608316 + THE1C LTR MaLR 1 375 0 205 267 12 35 chr15 50087722 50087808 -35607946 - L3b LINE CR1 -313 1270 1187 246 316 0 31 chr15 50087917 50088015 -35607739 + MER117 DNA MER1_type 97 191 -6 2257 123 0 0 chr15 50088556 50088865 -35606889 - AluSq SINE Alu -4 309 1 1420 164 46 11 chr15 50089621 50089884 -35605870 - AluJb SINE Alu 0 312 41 365 279 76 54 chr15 50091535 50091847 -35603907 - L2 LINE L2 -315 2998 2682 192 77 0 0 chr15 50092036 50092062 -35603692 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 408 219 141 0 chr15 50093411 50093539 -35602215 + MIR SINE MIR 117 262 0 2378 89 0 0 chr15 50094406 50094708 -35601046 - AluY SINE Alu -9 302 1 334 271 127 55 chr15 50094976 50095157 -35600597 - MIR SINE MIR 0 262 69 2491 100 0 0 chr15 50097013 50097323 -35598431 + AluSg SINE Alu 1 310 0 5916 70 12 3 chr15 50097589 50098358 -35597396 - L1PA12 LINE L1 -4 6164 5389 342 211 14 0 chr15 50099843 50099914 -35595840 - MIR3 SINE MIR -36 172 101 287 213 213 43 chr15 50099931 50100025 -35595729 - LTR33 LTR ERVL -307 214 105 391 221 142 0 chr15 50101678 50101791 -35593963 + LTR67 LTR ERVL 409 537 -20 186 133 0 0 chr15 50102302 50102332 -35593422 + (T)n Simple_repeat Simple_repeat 1 30 0 298 211 183 0 chr15 50102338 50102442 -35593312 - HAL1 LINE L1 0 2507 2385 2078 176 109 53 chr15 50102710 50103198 -35592556 - MLT2B1 LTR ERVL 0 520 6 1919 248 144 46 chr15 50103238 50104115 -35591639 - HAL1 LINE L1 -560 1947 959 2576 67 0 0 chr15 50104115 50104415 -35591339 - AluY SINE Alu -11 300 1 1919 248 144 46 chr15 50104415 50104534 -35591220 - HAL1 LINE L1 -1548 959 853 227 237 0 34 chr15 50104704 50104763 -35590991 - AluSg/x SINE Alu -105 197 141 354 292 14 28 chr15 50104775 50104919 -35590835 - L1MC3 LINE L1 -1656 6129 5988 1447 273 123 28 chr15 50104927 50105700 -35590054 - L1MC3 LINE L1 -750 5396 5104 190 244 81 47 chr15 50105871 50105957 -35589797 - MIR SINE MIR -21 241 153 505 269 54 0 chr15 50106070 50106200 -35589554 + L2 LINE L2 3126 3262 -10 541 250 73 0 chr15 50106527 50106663 -35589091 - L2 LINE L2 -10 3262 3117 232 207 52 35 chr15 50107602 50107660 -35588094 + tRNA-Ala-GCG tRNA tRNA 3 61 -14 372 244 89 0 chr15 50107913 50108003 -35587751 + AluJ/FLAM SINE Alu 3 100 -202 294 318 116 20 chr15 50108293 50108491 -35587263 - AluJo SINE Alu -1 301 85 248 91 0 0 chr15 50108486 50108519 -35587235 - Alu SINE Alu -133 170 138 * 246 210 113 16 chr15 50108927 50108989 -35586765 + AluSg SINE Alu 26 93 -207 200 213 0 21 chr15 50110494 50110541 -35585213 + GA-rich Low_complexity Low_complexity 3 48 0 227 263 119 34 chr15 50112157 50112275 -35583479 + AluJb SINE Alu 5 132 -170 3870 54 0 14 chr15 50112619 50113102 -35582652 + L1PA5 LINE L1 5671 6146 -8 222 281 18 0 chr15 50113299 50113356 -35582398 + MIR SINE MIR 41 98 -110 * 316 302 38 40 chr15 50113336 50113508 -35582246 - MIR3 SINE MIR -62 146 3 2365 127 19 11 chr15 50113922 50114283 -35581471 - THE1B LTR MaLR 0 364 1 518 257 50 41 chr15 50114372 50114593 -35581161 + MIR SINE MIR 30 255 -7 423 254 48 58 chr15 50115323 50115512 -35580242 - HAL1 LINE L1 -2319 188 2 21 0 0 0 chr15 50116584 50116605 -35579149 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 24 0 chr15 50116808 50116850 -35578904 + L2 LINE L2 2595 2637 -677 309 309 49 32 chr15 50116887 50117010 -35578744 - MIR SINE MIR -68 140 16 315 278 33 0 chr15 50117200 50117290 -35578464 + MIR3 SINE MIR 62 154 -54 220 186 0 85 chr15 50117293 50117352 -35578402 - MER5B DNA MER1_type 0 178 125 2557 205 60 14 chr15 50117380 50117950 -35577804 - L1MB8 LINE L1 -60 6118 5523 358 202 143 25 chr15 50117955 50118074 -35577680 - MER5A DNA MER1_type -36 153 21 432 248 99 7 chr15 50118476 50118617 -35577137 + MIR SINE MIR 58 211 -51 248 136 0 0 chr15 50118688 50118732 -35577022 - L1MB8 LINE L1 -771 5393 5350 245 68 45 23 chr15 50118731 50118775 -35576979 - L1MB5 LINE L1 -1 6173 6129 * 3035 156 32 76 chr15 50118769 50118978 -35576776 - L1M4 LINE L1 -662 5522 5305 2286 96 0 0 chr15 50118978 50119295 -35576459 - AluSg SINE Alu 0 317 1 656 209 0 43 chr15 50119295 50119434 -35576320 - FLAM_A SINE Alu 0 133 1 3035 156 32 76 chr15 50119434 50120061 -35575693 - L1M4 LINE L1 -877 5307 4690 2156 107 3 3 chr15 50120270 50120561 -35575193 - AluSx SINE Alu -8 304 14 2421 146 67 2 chr15 50121055 50121500 -35574254 + L1MA7 LINE L1 5816 6289 -2 1552 181 17 17 chr15 50121505 50121638 -35574116 + AluJo SINE Alu 1 133 -179 234 0 0 0 chr15 50121638 50121664 -35574090 + (TA)n Simple_repeat Simple_repeat 2 27 0 1552 181 17 17 chr15 50121664 50121828 -35573926 + AluJo SINE Alu 132 298 -14 22 35 0 0 chr15 50121828 50121857 -35573897 + AT_rich Low_complexity Low_complexity 1 29 0 229 259 17 0 chr15 50122825 50122883 -35572871 - L1ME4a LINE L1 -73 6048 5990 30 27 0 0 chr15 50123053 50123090 -35572664 + AT_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr15 50123333 50123361 -35572393 + AT_rich Low_complexity Low_complexity 1 28 0 250 225 112 38 chr15 50127120 50127245 -35568509 + MIR SINE MIR 5 130 -78 2368 103 0 6 chr15 50127688 50128000 -35567754 + AluSg SINE Alu 1 310 0 469 255 13 38 chr15 50128327 50128484 -35567270 - MER103 DNA DNA 0 166 14 2346 200 79 48 chr15 50129075 50129152 -35566602 - MER77 LTR ERV1 0 605 532 2255 88 7 7 chr15 50129152 50129448 -35566306 + AluSg SINE Alu 1 296 -14 2346 200 79 48 chr15 50129448 50129949 -35565805 - MER77 LTR ERV1 -73 532 9 298 194 45 0 chr15 50130161 50130228 -35565526 - L1MB5 LINE L1 0 6174 6105 * 2734 183 88 6 chr15 50130227 50130624 -35565130 - L1MB5 LINE L1 -327 5851 5488 1872 149 21 3 chr15 50130624 50130912 -35564842 - AluSx SINE Alu -19 293 1 2734 183 88 6 chr15 50130912 50131476 -35564278 - L1MB5 LINE L1 -690 5488 4812 3824 96 83 37 chr15 50131970 50132594 -35563160 - MER39B LTR ERV1 0 653 1 775 287 125 45 chr15 50132630 50133101 -35562653 - MLT1J LTR MaLR 0 511 3 437 325 72 27 chr15 50133359 50133735 -35562019 + L2 LINE L2 2393 2785 -529 631 159 28 0 chr15 50133753 50133860 -35561894 + MLT1B LTR MaLR 1 110 -280 1007 102 0 0 chr15 50133862 50133990 -35561764 + AluSg/x SINE Alu 155 282 -30 1376 173 92 0 chr15 50134022 50134282 -35561472 + MLT1B LTR MaLR 101 384 -6 509 241 279 20 chr15 50134338 50134728 -35561026 + L2 LINE L2 2823 3313 0 1302 137 23 131 chr15 50134749 50135099 -35560655 - L1MC3 LINE L1 -729 7056 6745 1038 78 49 0 chr15 50135123 50135265 -35560489 + L1PA10 LINE L1 5964 6112 -56 2029 129 3 19 chr15 50135931 50136241 -35559513 - AluSx SINE Alu -7 305 1 1412 38 1 0 chr15 50138122 50138300 -35557454 - L1PA6 LINE L1 -325 5829 5651 372 300 18 0 chr15 50138395 50138505 -35557249 + MER103 DNA DNA 8 119 -47 741 181 217 57 chr15 50139224 50139560 -35556194 - MER113 DNA MER1_type? -5 516 127 199 349 39 39 chr15 50139656 50139785 -35555969 - MIR SINE MIR -62 146 18 2374 94 0 0 chr15 50139802 50140100 -35555654 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr15 50140201 50140236 -35555518 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 50140386 50140415 -35555339 + AT_rich Low_complexity Low_complexity 1 29 0 1925 231 97 28 chr15 50141032 50141364 -35554390 - MLT1F LTR MaLR 0 542 162 1965 171 3 0 chr15 50141364 50141668 -35554086 + AluJb SINE Alu 1 305 -7 1925 231 97 28 chr15 50141668 50141842 -35553912 - MLT1F LTR MaLR -380 162 1 244 257 115 44 chr15 50142324 50142437 -35553317 - L1ME4a LINE L1 -28 6093 5973 592 189 182 7 chr15 50142585 50142733 -35553021 - MER106A DNA MER1_type 0 236 63 5645 110 10 4 chr15 50142859 50143685 -35552069 - L1PB3 LINE L1 0 6154 5324 541 243 37 79 chr15 50144684 50144898 -35550856 + MIR SINE MIR 51 255 -7 237 178 0 0 chr15 50144898 50144943 -35550811 + (ATGGTG)n Simple_repeat Simple_repeat 2 46 0 2497 82 10 0 chr15 50144943 50145249 -35550505 + AluSx SINE Alu 1 309 -3 234 0 0 0 chr15 50145249 50145275 -35550479 + (TA)n Simple_repeat Simple_repeat 2 27 0 896 197 13 0 chr15 50145275 50145427 -35550327 + FRAM SINE Alu 1 152 -24 2032 144 3 0 chr15 50145434 50145732 -35550022 + AluSx SINE Alu 1 299 -13 201 121 0 0 chr15 50146993 50147026 -35548728 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 442 306 8 0 chr15 50147032 50147156 -35548598 - L2 LINE L2 -7 3306 3182 329 167 119 12 chr15 50147450 50147534 -35548220 + MIR3 SINE MIR 110 202 -6 1965 148 3 7 chr15 50148347 50148650 -35547104 + AluJb SINE Alu 1 302 -10 270 328 128 6 chr15 50148777 50148957 -35546797 + MIR SINE MIR 53 254 -8 618 247 11 22 chr15 50149029 50149212 -35546542 + MIR SINE MIR 75 254 -8 886 297 129 41 chr15 50150456 50150874 -35544880 - LTR16B LTR ERVL -9 455 1 195 257 68 40 chr15 50151095 50151169 -35544585 - MIR SINE MIR -146 116 41 1246 99 139 0 chr15 50151348 50151550 -35544204 - MER30 DNA MER1_type 0 230 1 299 235 0 0 chr15 50153709 50153777 -35541977 + MIR SINE MIR 183 250 -12 409 319 22 7 chr15 50154042 50154180 -35541574 + MER117 DNA MER1_type 57 196 -1 211 257 132 29 chr15 50156418 50156554 -35539200 + MIR SINE MIR 63 212 -50 214 286 102 14 chr15 50156676 50156815 -35538939 + MIR3 SINE MIR 15 175 -33 639 222 62 53 chr15 50158112 50158319 -35537435 + MIR SINE MIR 36 247 -15 2248 112 0 0 chr15 50158319 50158613 -35537141 - AluSx SINE Alu -18 294 1 639 222 62 53 chr15 50158613 50158630 -35537124 + MIR SINE MIR 247 262 0 330 194 0 0 chr15 50158819 50158881 -35536873 - MIR SINE MIR -116 146 85 1991 149 20 0 chr15 50159152 50159448 -35536306 - AluSx SINE Alu -10 302 1 283 298 48 0 chr15 50159576 50159680 -35536074 + CT-rich Low_complexity Low_complexity 3 111 0 251 242 32 0 chr15 50160304 50160366 -35535388 + CT-rich Low_complexity Low_complexity 3 66 0 378 282 0 8 chr15 50160444 50160568 -35535186 - HAL1b LINE L1 0 1348 1226 678 167 9 0 chr15 50161660 50161768 -35533986 + FLAM_C SINE Alu 10 118 -25 248 143 0 48 chr15 50161769 50161853 -35533901 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 1289 242 33 77 chr15 50161904 50162264 -35533490 - MLT1C LTR MaLR 0 467 93 1730 155 9 60 chr15 50162264 50162580 -35533174 - AluJb SINE Alu -12 300 1 2562 52 0 16 chr15 50162584 50162891 -35532863 - AluY SINE Alu -9 302 1 1289 242 33 77 chr15 50162891 50163008 -35532746 - MLT1C LTR MaLR -377 90 6 325 227 15 0 chr15 50164045 50164111 -35531643 - MLT1L LTR MaLR -79 536 470 1701 237 75 28 chr15 50164420 50164913 -35530841 - L1MC4 LINE L1 -140 7902 7387 * 2210 244 63 25 chr15 50164889 50165412 -35530342 - L1MC4 LINE L1 -935 7107 6554 2500 87 0 0 chr15 50165412 50165722 -35530032 - AluSx SINE Alu -2 310 1 2210 244 63 25 chr15 50165722 50165832 -35529922 - L1MC4 LINE L1 -1488 6554 6450 847 169 0 0 chr15 50166226 50166356 -35529398 - MER3 DNA MER1_type -69 140 11 366 277 196 14 chr15 50166782 50166930 -35528824 - MER5A DNA MER1_type 0 189 15 878 280 101 52 chr15 50167018 50167515 -35528239 + MARNA DNA Mariner 57 577 -9 251 258 91 9 chr15 50167633 50167748 -35528006 + MIR SINE MIR 17 141 -67 180 0 0 0 chr15 50168690 50168710 -35527044 + (A)n Simple_repeat Simple_repeat 1 20 0 217 333 24 0 chr15 50169736 50169820 -35525934 - MIR3 SINE MIR -9 199 114 203 266 80 62 chr15 50171368 50171481 -35524273 - L2 LINE L2 -234 3038 2924 195 254 0 17 chr15 50171590 50171649 -35524105 - MIR SINE MIR -4 258 201 270 233 41 27 chr15 50172322 50172395 -35523359 + MIR SINE MIR 23 96 -166 224 274 145 33 chr15 50172465 50172565 -35523189 - L2 LINE L2 -1115 2199 2112 1415 188 45 17 chr15 50172565 50172853 -35522901 + AluJo SINE Alu 3 298 -14 224 274 145 33 chr15 50172853 50172993 -35522761 - L2 LINE L2 -1202 2112 1932 188 178 0 22 chr15 50173930 50173975 -35521779 + (TG)n Simple_repeat Simple_repeat 1 44 0 2008 141 0 7 chr15 50174405 50174716 -35521038 - AluSx SINE Alu 0 312 1 544 182 14 61 chr15 50174952 50175100 -35520654 + L2 LINE L2 3172 3312 -1 196 219 24 24 chr15 50175102 50175184 -35520570 + GA-rich Low_complexity Low_complexity 2 83 0 869 251 25 0 chr15 50177055 50177258 -35518496 + MIR SINE MIR 18 225 -37 400 279 102 7 chr15 50177310 50177457 -35518297 + MIR SINE MIR 74 234 -28 484 277 39 0 chr15 50177916 50178071 -35517683 - MIR SINE MIR -57 205 45 1757 153 0 82 chr15 50178074 50178414 -35517340 + AluJb SINE Alu 1 312 0 1223 235 103 57 chr15 50178487 50178981 -35516773 - MLT1H1 LTR MaLR 0 555 39 216 265 20 0 chr15 50179251 50179300 -35516454 - MIR3 SINE MIR -30 178 129 226 340 46 37 chr15 50179403 50179741 -35516013 - L2 LINE L2 -108 3164 2741 994 301 89 30 chr15 50179886 50180425 -35515329 + L1MC4a LINE L1 5308 5878 -1930 2150 111 3 7 chr15 50180546 50180835 -35514919 + AluSx SINE Alu 3 290 -22 1341 104 68 27 chr15 50181430 50181651 -35514103 + MER30 DNA MER1_type 1 230 0 1056 209 47 5 chr15 50181679 50181890 -35513864 - MER58A DNA MER1_type 0 224 5 1250 188 126 48 chr15 50182102 50182475 -35513279 - LTR37A LTR ERV1 0 426 25 189 226 215 11 chr15 50182759 50182852 -35512902 + MIR SINE MIR 27 138 -70 254 185 210 12 chr15 50182993 50183074 -35512680 + MIR SINE MIR 76 172 -90 181 373 0 0 chr15 50183114 50183189 -35512565 - L2 LINE L2 -201 3071 2997 321 26 0 0 chr15 50183680 50183718 -35512036 + (TG)n Simple_repeat Simple_repeat 1 38 0 2034 75 0 4 chr15 50184611 50184894 -35510860 - AluY SINE Alu 0 310 29 35 24 0 0 chr15 50185766 50185808 -35509946 + AT_rich Low_complexity Low_complexity 1 42 0 39997 51 4 0 chr15 50185841 50191546 -35504208 - L1PA5 LINE L1 0 6154 429 372 319 48 18 chr15 50191675 50191948 -35503806 - L1M4 LINE L1 -3213 2933 2653 271 277 0 0 chr15 50192162 50192227 -35503527 + MIR SINE MIR 19 83 -125 202 317 73 0 chr15 50192847 50192929 -35502825 - L2 LINE L2 -1 3271 3184 290 276 20 126 chr15 50193843 50194097 -35501657 + L2 LINE L2 2976 3202 -70 1061 129 9 138 chr15 50194257 50194474 -35501280 + MER5A DNA MER1_type 1 189 0 420 276 83 7 chr15 50194572 50194717 -35501037 + MER117 DNA MER1_type 6 161 -36 423 0 0 0 chr15 50196416 50196463 -35499291 + (CA)n Simple_repeat Simple_repeat 2 48 0 315 159 22 145 chr15 50196590 50196728 -35499026 + MER91B DNA MER1_type 6 126 -64 266 178 0 0 chr15 50196728 50196773 -35498981 + MER91B DNA MER1_type 85 129 -61 192 279 164 57 chr15 50196978 50197100 -35498654 - L2 LINE L2 0 3272 3138 1974 154 0 0 chr15 50197333 50197632 -35498122 - AluJo SINE Alu -13 299 1 2712 48 0 0 chr15 50197996 50198306 -35497448 - AluY SINE Alu -1 310 1 180 0 0 0 chr15 50198349 50198369 -35497385 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1554 231 94 5 chr15 50198370 50198764 -35496990 - MER57B LTR ERV1 -5 429 1 457 160 0 97 chr15 50198764 50198888 -35496866 - MER57B-int LTR ERV1 0 7537 7029 716 291 43 28 chr15 50198895 50199149 -35496605 - MER57B-int LTR ERV1 -485 7052 6795 3351 195 94 86 chr15 50199484 50201232 -35494522 - MER57B-int LTR ERV1 -1775 5762 2098 637 190 115 40 chr15 50201292 50201563 -35494191 - MER57B-int LTR ERV1 -2968 1968 1737 830 271 42 18 chr15 50201577 50201861 -35493893 - MER57B-int LTR ERV1 -2300 4458 4168 714 280 56 26 chr15 50201917 50202185 -35493569 - MER34C LTR ERV1 -155 430 155 496 219 7 62 chr15 50202185 50202220 -35493534 - MER57B-int LTR ERV1 -4135 988 953 1400 184 134 10 chr15 50202220 50202525 -35493229 - MER2 DNA MER2_type -1 343 1 496 219 7 62 chr15 50202525 50202635 -35493119 - MER57B-int LTR ERV1 -4170 953 851 2467 43 3 17 chr15 50202646 50202947 -35492807 + AluY SINE Alu 1 297 -14 3392 214 20 47 chr15 50203055 50203922 -35491832 - MER57B-int LTR ERV1 -6692 845 3 1331 274 57 29 chr15 50203927 50204347 -35491407 - MER57B LTR ERV1 -2 432 1 287 286 52 0 chr15 50204350 50204427 -35491327 - MIR3 SINE MIR -21 187 107 210 313 0 36 chr15 50206815 50206898 -35488856 - L2 LINE L2 0 3272 3193 288 0 0 0 chr15 50207210 50207242 -35488512 + (TG)n Simple_repeat Simple_repeat 2 33 0 3948 145 20 44 chr15 50207315 50207360 -35488394 - L1MB2 LINE L1 -10 6161 6116 2185 118 72 34 chr15 50207360 50207709 -35488045 + THE1B LTR MaLR 3 364 0 3948 145 20 44 chr15 50207709 50208366 -35487388 - L1MB2 LINE L1 -55 6116 5476 922 171 32 11 chr15 50208366 50208553 -35487201 - AluSg/x SINE Alu -6 303 113 882 316 31 36 chr15 50208670 50209245 -35486509 - L1MB3 LINE L1 -129 6054 5483 2197 95 18 0 chr15 50209252 50209536 -35486218 - AluSg SINE Alu 0 310 22 1765 138 3 70 chr15 50210304 50210481 -35485273 - AluJo SINE Alu -5 307 160 2502 53 0 3 chr15 50210481 50210781 -35484973 - AluY SINE Alu -11 300 2 1765 138 3 70 chr15 50210781 50210930 -35484824 - AluJo SINE Alu -152 160 3 392 266 71 33 chr15 50211777 50211961 -35483793 - MIR SINE MIR -52 210 20 306 244 42 76 chr15 50213241 50213360 -35482394 + MIR3 SINE MIR 85 199 -9 411 124 229 105 chr15 50213475 50213628 -35482126 - MER53 DNA DNA -1 188 17 480 277 79 64 chr15 50213697 50213717 -35482037 + L2 LINE L2 2864 2882 -390 2251 104 0 3 chr15 50213717 50214024 -35481730 - AluSc SINE Alu 0 309 4 480 277 79 64 chr15 50214024 50214205 -35481549 + L2 LINE L2 2882 3068 -204 181 331 51 34 chr15 50214370 50214545 -35481209 - L2 LINE L2 -215 3057 2880 196 164 137 14 chr15 50214610 50214683 -35481071 - L2 LINE L2 -543 2771 2690 1975 129 4 4 chr15 50214916 50215196 -35480558 + AluJb SINE Alu 1 280 -32 405 0 0 0 chr15 50215373 50215418 -35480336 + (CA)n Simple_repeat Simple_repeat 2 46 0 209 206 0 32 chr15 50215582 50215645 -35480109 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 264 198 22 22 chr15 50215702 50215793 -35479961 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 203 262 170 73 chr15 50216540 50216746 -35479008 + L2 LINE L2 2805 3030 -242 286 379 61 0 chr15 50216770 50216902 -35478852 + L2 LINE L2 3133 3272 0 466 233 39 0 chr15 50216925 50217028 -35478726 + L2 LINE L2 3202 3308 -5 776 267 68 14 chr15 50217157 50217378 -35478376 + MIR SINE MIR 30 262 0 314 325 114 0 chr15 50217424 50217538 -35478216 + MIR3 SINE MIR 70 196 -12 287 313 326 0 chr15 50218644 50218788 -35476966 + MIR SINE MIR 64 254 -8 1042 182 0 45 chr15 50219130 50219328 -35476426 + MER5A DNA MER1_type 1 189 0 751 199 66 70 chr15 50220941 50221050 -35474704 - HAL1 LINE L1 -129 2378 2270 5435 51 40 3 chr15 50221050 50221699 -35474055 + L1PA6 LINE L1 5482 6154 0 751 199 66 70 chr15 50221699 50221875 -35473879 - HAL1 LINE L1 -237 2270 2094 785 230 81 20 chr15 50221877 50222206 -35473548 - LTR16A LTR ERVL -3 454 89 1826 235 130 54 chr15 50222297 50222986 -35472768 - HAL1 LINE L1 -415 2092 1338 2208 180 67 31 chr15 50222986 50223435 -35472319 + LTR40c LTR ERVL 1 465 0 1826 235 130 54 chr15 50223435 50223506 -35472248 - HAL1 LINE L1 -1169 1338 1274 2466 182 46 0 chr15 50223541 50224002 -35471752 - L1MB7 LINE L1 0 6184 5703 1596 181 44 3 chr15 50224002 50224300 -35471454 + MLT1A1 LTR MaLR 2 311 -54 2308 116 7 0 chr15 50224300 50224650 -35471104 - AluSx SINE Alu 0 352 1 384 175 0 0 chr15 50224651 50224714 -35471040 + MLT1A1 LTR MaLR 300 362 -3 687 207 7 0 chr15 50224714 50224849 -35470905 - L1MB7 LINE L1 -477 5707 5572 2241 203 99 9 chr15 50224867 50225430 -35470324 - L1MB7 LINE L1 -1210 4936 4323 696 165 17 0 chr15 50225431 50225546 -35470208 - FLAM_C SINE Alu -16 117 1 1331 219 54 9 chr15 50225546 50225955 -35469799 - L1MB7 LINE L1 -3212 2934 2513 1100 178 120 64 chr15 50225943 50226105 -35469649 - L1MB7 LINE L1 -3492 2654 2502 * 360 0 0 0 chr15 50226105 50226145 -35469609 + (TG)n Simple_repeat Simple_repeat 2 41 0 2150 118 0 14 chr15 50226145 50226433 -35469321 - AluSx SINE Alu -28 284 1 1100 178 120 64 chr15 50226433 50226595 -35469159 - L1MB7 LINE L1 -3643 2503 2311 800 241 153 6 chr15 50226649 50226969 -35468785 - HAL1 LINE L1 -2132 375 9 718 186 16 0 chr15 50227263 50227387 -35468367 - MER5A DNA MER1_type -63 126 1 1764 169 0 0 chr15 50227711 50227984 -35467770 - AluJo SINE Alu -39 273 1 967 115 0 0 chr15 50228021 50228151 -35467603 + AluJb SINE Alu 1 130 -182 1288 147 4 26 chr15 50228258 50228490 -35467264 + AluJb SINE Alu 57 283 -29 231 271 0 34 chr15 50229676 50229735 -35466019 - L2 LINE L2 -16 3256 3200 453 313 125 27 chr15 50229828 50230283 -35465471 - L2 LINE L2 -5 3267 2746 1932 107 0 55 chr15 50230386 50230677 -35465077 + AluSx SINE Alu 1 275 -37 1054 197 5 31 chr15 50230982 50231205 -35464549 + L1MB7 LINE L1 5924 6140 -44 2688 157 20 30 chr15 50232284 50232447 -35463307 - L1MA3 LINE L1 0 6305 6142 236 30 30 0 chr15 50232447 50232480 -35463274 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2220 101 0 3 chr15 50232480 50232767 -35462987 - AluSq SINE Alu -27 286 1 2688 157 20 30 chr15 50232767 50233094 -35462660 - L1MA3 LINE L1 -161 6144 5819 648 269 108 0 chr15 50233488 50233700 -35462054 + MIR SINE MIR 4 238 -24 572 167 15 8 chr15 50233866 50233974 -35461780 - MER5A DNA MER1_type -77 112 4 22 35 0 0 chr15 50234829 50234858 -35460896 + AT_rich Low_complexity Low_complexity 1 29 0 3949 96 25 11 chr15 50234861 50235242 -35460512 - L1MA2 LINE L1 -5 6299 5906 2178 136 0 0 chr15 50235242 50235551 -35460203 - AluSx SINE Alu -3 309 1 3949 96 25 11 chr15 50235551 50235724 -35460030 - L1MA2 LINE L1 -398 5906 5737 15976 132 22 9 chr15 50235728 50238645 -35457109 - L1M1 LINE L1 -4600 2965 12 21 0 0 0 chr15 50239071 50239092 -35456662 + AT_rich Low_complexity Low_complexity 1 21 0 253 229 119 28 chr15 50239515 50239624 -35456130 - MIR SINE MIR -12 250 132 354 23 0 0 chr15 50240742 50240785 -35454969 + (TG)n Simple_repeat Simple_repeat 2 44 0 264 314 29 0 chr15 50241635 50241737 -35454017 - L2 LINE L2 -38 3275 3171 460 283 81 0 chr15 50243286 50243459 -35452295 - L1MC4a LINE L1 -1920 5888 5702 2189 165 97 84 chr15 50243459 50244090 -35451664 - LTR48B LTR ERV1 0 644 6 10191 221 110 92 chr15 50244180 50244951 -35450803 - LTR48B-int LTR ERV1 -164 6167 5412 1698 107 0 0 chr15 50244951 50245175 -35450579 + AluSg/x SINE Alu 85 308 -2 10191 221 110 92 chr15 50245175 50245938 -35449816 - LTR48B-int LTR ERV1 -919 5412 4664 1925 208 11 50 chr15 50245938 50246399 -35449355 - LTR47B LTR ERVL 0 443 1 10191 221 110 92 chr15 50246399 50249599 -35446155 - LTR48B-int LTR ERV1 -1667 4664 1200 277 290 0 0 chr15 50249599 50249668 -35446086 - tRNA-Glu-GAG tRNA tRNA 0 75 7 10191 221 110 92 chr15 50249668 50250530 -35445224 - LTR48B-int LTR ERV1 -5131 1200 355 1803 191 33 38 chr15 50250563 50250993 -35444761 - LTR48B-int LTR ERV1 -4617 1329 4 2527 153 84 98 chr15 50250998 50251342 -35444412 - LTR48B LTR ERV1 0 644 312 2673 133 49 2 chr15 50251342 50251749 -35444005 - MSTB LTR MaLR 0 426 1 2527 153 84 98 chr15 50251749 50252057 -35443697 - LTR48B LTR ERV1 -332 312 1 788 236 139 48 chr15 50252057 50252367 -35443387 - L1MC4a LINE L1 -2103 5705 5368 298 246 0 0 chr15 50252375 50252440 -35443314 + MER96 DNA MER1_type? 1 65 -110 394 302 72 26 chr15 50252550 50252980 -35442774 - L1MC4a LINE L1 -775 5371 4922 5347 55 5 3 chr15 50253751 50254409 -35441345 + L1PA7 LINE L1 5496 6154 0 292 350 27 21 chr15 50255388 50255574 -35440180 + MIR SINE MIR 72 258 -4 1918 97 57 40 chr15 50255779 50256077 -35439677 - AluSg SINE Alu -7 303 1 488 289 28 17 chr15 50256127 50256307 -35439447 + MIR SINE MIR 65 246 -16 1837 127 0 4 chr15 50256335 50256619 -35439135 - AluSc SINE Alu 0 306 24 1073 88 0 0 chr15 50256719 50256855 -35438899 + AluSg/x SINE Alu 162 297 -15 570 210 0 0 chr15 50256855 50256979 -35438775 + (TATG)n Simple_repeat Simple_repeat 1 124 0 485 198 59 23 chr15 50257338 50257479 -35438275 + L1MC4 LINE L1 7782 8042 0 193 302 39 70 chr15 50258460 50258589 -35437165 + L3 LINE CR1 1449 1573 -4 259 348 114 41 chr15 50258762 50259701 -35436053 + L2 LINE L2 2245 3272 0 196 349 0 0 chr15 50259941 50260007 -35435747 - L2 LINE L2 -998 2316 2251 883 266 108 25 chr15 50260851 50261250 -35434504 - MLT1L LTR MaLR -10 605 174 240 227 0 15 chr15 50261299 50261365 -35434389 - MLT1L LTR MaLR -543 72 8 2293 100 0 37 chr15 50261389 50261710 -35434044 - AluSc SINE Alu 0 309 1 331 245 126 73 chr15 50261961 50262222 -35433532 - MLT1J LTR MaLR 0 511 237 200 227 45 30 chr15 50262552 50262618 -35433136 - MIR SINE MIR -76 132 66 22 0 0 0 chr15 50262820 50262842 -35432912 + AT_rich Low_complexity Low_complexity 1 22 0 825 65 47 0 chr15 50262842 50262949 -35432805 - L1MA1 LINE L1 -2 6300 6189 692 246 104 14 chr15 50263645 50263856 -35431898 + MIR SINE MIR 15 244 -18 367 303 4 8 chr15 50264704 50264840 -35430914 + MIR SINE MIR 21 153 -65 604 200 103 49 chr15 50264960 50265174 -35430580 - MER34 LTR ERV1 0 542 341 1997 157 0 0 chr15 50265174 50265468 -35430286 + AluSx SINE Alu 1 294 -18 604 200 103 49 chr15 50265468 50265854 -35429900 - MER34 LTR ERV1 -201 341 1 1401 168 13 137 chr15 50266815 50266903 -35428851 + MLT1A2 LTR MaLR 30 127 -247 2228 104 3 0 chr15 50266903 50267192 -35428562 - AluSq SINE Alu -23 290 1 1401 168 13 137 chr15 50267192 50267496 -35428258 + MLT1A2 LTR MaLR 127 373 -1 2251 128 0 0 chr15 50268252 50268558 -35427196 + AluSx SINE Alu 1 306 -6 564 298 47 11 chr15 50270723 50270914 -35424840 - MIR SINE MIR -38 224 27 1964 134 10 7 chr15 50271381 50271679 -35424075 + AluSx SINE Alu 6 304 -8 498 319 113 20 chr15 50271766 50272236 -35423518 + L2 LINE L2 2782 3294 -19 232 281 13 49 chr15 50272385 50272514 -35423240 - MIR SINE MIR -56 206 86 233 338 56 48 chr15 50272591 50272822 -35422932 + MIR SINE MIR 20 252 -10 1272 119 11 0 chr15 50273425 50273601 -35422153 - AluSg/x SINE Alu 0 312 135 663 54 0 0 chr15 50273601 50273693 -35422061 + (TC)n Simple_repeat Simple_repeat 1 92 0 198 0 0 0 chr15 50274125 50274147 -35421607 + (T)n Simple_repeat Simple_repeat 1 22 0 2496 188 24 43 chr15 50274771 50275277 -35420477 - MLT1F LTR MaLR -2 540 45 1810 159 32 0 chr15 50275989 50276272 -35419482 - AluJo SINE Alu -20 292 1 1967 295 80 42 chr15 50276273 50277351 -35418403 - L3 LINE CR1 -48 1529 411 2317 81 24 10 chr15 50279887 50280184 -35415570 + AluY SINE Alu 1 301 -10 1371 192 79 87 chr15 50281073 50281501 -35414253 - MER39 LTR ERV1 -27 680 114 2608 82 5 37 chr15 50281501 50281665 -35414089 + THE1B LTR MaLR 1 169 -195 2461 88 3 0 chr15 50281665 50281970 -35413784 - AluSq SINE Alu -7 306 1 2608 82 5 37 chr15 50281970 50282181 -35413573 + THE1B LTR MaLR 169 364 0 1371 192 79 87 chr15 50282181 50282295 -35413459 - MER39 LTR ERV1 -593 114 1 1777 222 109 23 chr15 50282441 50282883 -35412871 - MLT1J LTR MaLR -31 480 1 221 304 0 51 chr15 50283572 50283651 -35412103 + L2 LINE L2 3235 3309 -4 672 228 67 10 chr15 50284253 50284446 -35411308 - MIR SINE MIR 0 262 59 2878 16 0 0 chr15 50284446 50284756 -35410998 - AluYb8 SINE Alu -8 310 1 431 290 51 28 chr15 50285412 50285629 -35410125 + MIR SINE MIR 3 224 -38 536 292 68 52 chr15 50285643 50285738 -35410016 + MIR SINE MIR 9 101 -161 1952 157 0 7 chr15 50285738 50286038 -35409716 - AluJo SINE Alu -14 298 1 536 292 68 52 chr15 50286038 50286192 -35409562 + MIR SINE MIR 101 262 0 1987 163 0 3 chr15 50286878 50287179 -35408575 - AluJb SINE Alu -12 300 1 287 286 95 16 chr15 50287668 50287794 -35407960 + MER5B DNA MER1_type 22 157 -21 2244 102 0 10 chr15 50288038 50288341 -35407413 - AluSg SINE Alu -10 300 1 499 279 104 30 chr15 50288404 50288605 -35407149 + LTR33 LTR ERVL 1 216 -305 302 324 27 45 chr15 50288637 50288738 -35407016 + LTR33 LTR ERVL 301 402 -119 1082 170 5 16 chr15 50288738 50288926 -35406828 + MER5A DNA MER1_type 4 189 0 302 324 27 45 chr15 50288926 50289046 -35406708 + LTR33 LTR ERVL 402 518 -3 305 269 41 28 chr15 50289047 50289192 -35406562 - L1MC/D LINE L1 -2114 5694 5548 591 169 0 0 chr15 50289325 50289431 -35406323 - MER5A DNA MER1_type -80 109 4 1739 181 0 23 chr15 50289461 50289760 -35405994 + AluJo SINE Alu 1 292 -20 513 267 87 23 chr15 50289799 50289971 -35405783 + MIR SINE MIR 49 231 -31 2163 107 0 33 chr15 50290062 50290362 -35405392 - AluSx SINE Alu -22 290 1 21 0 0 0 chr15 50292131 50292152 -35403602 + AT_rich Low_complexity Low_complexity 1 21 0 183 204 0 0 chr15 50292968 50293012 -35402742 + T-rich Low_complexity Low_complexity 1 44 0 508 241 76 55 chr15 50293650 50293841 -35401913 - L1ME4a LINE L1 -51 6070 5868 1809 180 0 3 chr15 50293841 50294147 -35401607 - AluJo SINE Alu -7 305 1 508 241 76 55 chr15 50294147 50294283 -35401471 - L1ME4a LINE L1 -253 5868 5736 295 197 33 0 chr15 50294554 50294615 -35401139 - MLT1I LTR MaLR -279 130 68 202 175 50 0 chr15 50346087 50346127 -35349627 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2367 99 3 0 chr15 50346236 50346539 -35349215 - AluSq SINE Alu -9 304 1 447 185 45 2 chr15 50347034 50347190 -35348564 + MER58A DNA MER1_type 5 195 -29 1033 84 6 30 chr15 50347716 50347882 -35347872 + L1MB3 LINE L1 6020 6181 -2 576 133 51 0 chr15 50347888 50347986 -35347768 + L1MD3 LINE L1 7893 7995 0 483 238 40 0 chr15 50348030 50348131 -35347623 + Charlie1 DNA MER1_type 37 141 -2620 * 2522 169 48 18 chr15 50348122 50348667 -35347087 + Charlie1 DNA MER1_type 2201 2761 0 1468 188 27 59 chr15 50349929 50350034 -35345720 - Charlie4a DNA MER1_type -1504 457 350 1849 156 7 7 chr15 50350034 50350322 -35345432 - AluJb SINE Alu -24 288 1 1468 188 27 59 chr15 50350322 50350369 -35345385 - Charlie4a DNA MER1_type -1611 350 303 1874 162 0 49 chr15 50350369 50350697 -35345057 - AluJb SINE Alu 0 312 1 1468 188 27 59 chr15 50350697 50350947 -35344807 - Charlie4a DNA MER1_type -1658 303 67 205 0 83 28 chr15 50351429 50351465 -35344289 + T-rich Low_complexity Low_complexity 3 40 0 1504 148 30 4 chr15 50352346 50352583 -35343171 + AluJb SINE Alu 3 245 -67 1334 154 14 14 chr15 50352583 50352804 -35342950 + THE1C LTR MaLR 1 221 -154 2144 121 13 0 chr15 50352967 50353265 -35342489 + AluSx SINE Alu 1 302 -10 716 321 5 0 chr15 50353273 50353485 -35342269 - MIR SINE MIR 0 262 50 241 342 25 66 chr15 50354563 50354670 -35341084 + L2 LINE L2 2904 3001 -271 911 241 37 0 chr15 50354670 50354886 -35340868 + MER58A DNA MER1_type 1 224 0 241 342 25 66 chr15 50354886 50354974 -35340780 + L2 LINE L2 3001 3091 -181 12031 47 9 5 chr15 50355834 50357953 -35337801 - L1PA5 LINE L1 -124 6030 3903 588 131 12 0 chr15 50358053 50358137 -35337617 - AluJ/FLAM SINE Alu -226 86 2 1187 285 41 45 chr15 50358424 50359083 -35336671 + L1MC4a LINE L1 5303 5958 -1850 1077 144 6 6 chr15 50359926 50360093 -35335661 - FRAM SINE Alu -9 167 1 2136 128 0 26 chr15 50360229 50360403 -35335351 - AluSx SINE Alu -8 304 140 2234 83 13 37 chr15 50360403 50360703 -35335051 - AluSc SINE Alu -16 293 1 2136 128 0 26 chr15 50360703 50360840 -35334914 - AluSx SINE Alu -172 140 1 198 0 0 0 chr15 50361041 50361063 -35334691 + (TA)n Simple_repeat Simple_repeat 2 23 0 2346 79 0 0 chr15 50361080 50361360 -35334394 - AluY SINE Alu -31 280 1 581 292 197 9 chr15 50361376 50361701 -35334053 - L2 LINE L2 -556 2758 2373 331 256 80 22 chr15 50361744 50361881 -35333873 - L2 LINE L2 -797 2517 2373 1208 309 124 9 chr15 50361924 50362584 -35333170 - L2 LINE L2 -797 2517 1782 1940 106 8 0 chr15 50362600 50362855 -35332899 - AluSp SINE Alu -56 257 1 436 255 0 9 chr15 50363218 50363324 -35332430 + L1MC5 LINE L1 7811 7915 -46 2211 120 3 0 chr15 50363431 50363723 -35332031 + AluSq SINE Alu 1 293 -20 1867 112 47 4 chr15 50364016 50364274 -35331480 + AluSx SINE Alu 1 269 -43 305 175 0 38 chr15 50364276 50364356 -35331398 + L1PA15 LINE L1 6088 6164 -1 189 74 0 0 chr15 50365040 50365067 -35330687 + (TG)n Simple_repeat Simple_repeat 2 28 0 2346 177 38 13 chr15 50365389 50365840 -35329914 - MLT1C LTR MaLR 0 467 6 180 0 0 0 chr15 50366014 50366034 -35329720 + (TG)n Simple_repeat Simple_repeat 2 21 0 2158 144 0 0 chr15 50367319 50367618 -35328136 + AluJb SINE Alu 1 299 -13 186 279 43 120 chr15 50369208 50369416 -35326338 - L2 LINE L2 -556 2758 2567 657 273 96 9 chr15 50369430 50369650 -35326104 - MIR SINE MIR -1 261 23 2219 110 3 3 chr15 50369800 50370100 -35325654 + AluSq SINE Alu 1 300 -13 712 290 156 0 chr15 50370154 50370430 -35325324 - LTR16A LTR ERVL 0 450 132 1969 122 4 4 chr15 50371140 50371454 -35324300 - AluSx SINE Alu 0 324 11 237 65 0 0 chr15 50371729 50371760 -35323994 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 247 155 35 0 chr15 50372234 50372292 -35323462 - L1MD1 LINE L1 -3 6239 6180 366 129 0 0 chr15 50373039 50373101 -35322653 + (TG)n Simple_repeat Simple_repeat 1 62 0 345 47 0 0 chr15 50373204 50373247 -35322507 + (TG)n Simple_repeat Simple_repeat 2 44 0 557 218 48 7 chr15 50373477 50373624 -35322130 + MIR SINE MIR 51 203 -59 339 252 237 0 chr15 50373627 50373762 -35321992 + MIR SINE MIR 91 257 -5 2266 156 39 21 chr15 50373822 50374254 -35321500 - MSTB2 LTR MaLR -2 455 1 201 296 99 12 chr15 50375864 50375945 -35319809 - L2 LINE L2 -48 3224 3137 2422 156 47 60 chr15 50376899 50377331 -35318423 - MLT1D LTR MaLR 0 505 80 2265 120 54 14 chr15 50377331 50377681 -35318073 + THE1B LTR MaLR 1 364 0 2422 156 47 60 chr15 50377681 50377760 -35317994 - MLT1D LTR MaLR -425 80 1 190 333 76 0 chr15 50378254 50378359 -35317395 + L3 LINE CR1 1326 1438 -139 207 322 69 0 chr15 50378493 50378580 -35317174 - MIR SINE MIR -52 210 118 267 277 80 19 chr15 50378812 50378943 -35316811 - MIR SINE MIR -62 146 20 327 25 0 0 chr15 50379512 50379552 -35316202 + (CA)n Simple_repeat Simple_repeat 1 40 0 211 75 0 75 chr15 50379557 50379610 -35316144 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 1149 191 13 69 chr15 50380034 50380338 -35315416 + L1ME3A LINE L1 5879 6165 -5 2083 122 10 0 chr15 50380920 50381216 -35314538 - AluSq SINE Alu -12 301 3 3504 130 91 16 chr15 50382677 50383199 -35312555 + L1MB4 LINE L1 5494 6074 -106 2374 83 0 3 chr15 50383199 50383488 -35312266 + AluSc SINE Alu 1 288 -21 3504 130 91 16 chr15 50383488 50383604 -35312150 + L1MB4 LINE L1 6074 6180 0 279 282 210 24 chr15 50383989 50384113 -35311641 + MIR SINE MIR 45 191 -71 191 296 0 0 chr15 50384273 50384327 -35311427 + L2 LINE L2 3234 3287 -26 843 183 35 83 chr15 50384875 50385105 -35310649 - MER20 DNA MER1_type 0 219 1 338 170 64 158 chr15 50385136 50385307 -35310447 + MER5B DNA MER1_type 24 178 0 319 283 72 7 chr15 50385347 50385485 -35310269 - MIR SINE MIR -52 210 64 1146 64 0 0 chr15 50385858 50385998 -35309756 + AluY SINE Alu 136 275 -36 7810 53 0 2 chr15 50385999 50386979 -35308775 + L1P LINE L1 2863 3840 -2306 639 193 2 0 chr15 50387120 50387804 -35307950 + CT-rich Low_complexity Low_complexity 1 685 0 680 173 6 0 chr15 50387833 50388012 -35307742 + CT-rich Low_complexity Low_complexity 1 180 0 919 272 104 46 chr15 50388280 50388883 -35306871 - L1MC4a LINE L1 -1911 5897 5260 1666 144 104 27 chr15 50389390 50389688 -35306066 - MER1B DNA MER1_type 0 339 19 1533 215 44 21 chr15 50389766 50390281 -35305473 - MER77 LTR ERV1 -7 598 21 1972 179 63 0 chr15 50390528 50390908 -35304846 - LTR65 LTR ERV1 0 669 266 266 70 23 0 chr15 50391115 50391124 -35304630 + (TTTTC)n Simple_repeat Simple_repeat 2 9 -36 207 0 0 0 chr15 50391124 50391147 -35304607 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 266 70 23 0 chr15 50391147 50391180 -35304574 + (TTTTC)n Simple_repeat Simple_repeat 9 45 0 1988 138 0 7 chr15 50392522 50392830 -35302924 + AluSx SINE Alu 1 306 0 396 0 0 0 chr15 50392998 50393042 -35302712 + (CA)n Simple_repeat Simple_repeat 2 45 0 1220 190 0 0 chr15 50393302 50393507 -35302247 - AluSx SINE Alu -107 205 1 196 241 139 0 chr15 50393795 50393874 -35301880 - MIR SINE MIR -147 115 26 386 291 5 94 chr15 50394400 50394613 -35301141 + MIR SINE MIR 69 262 0 2468 179 7 26 chr15 50394888 50395346 -35300408 + MLT1D LTR MaLR 1 449 -56 1843 152 0 23 chr15 50395346 50395648 -35300106 - AluJb SINE Alu -17 295 1 347 298 16 16 chr15 50396900 50397021 -35298733 + MIR3 SINE MIR 63 183 -25 215 194 32 32 chr15 50398679 50398741 -35297013 - L2 LINE L2 -5 3308 3247 213 318 16 0 chr15 50398855 50398918 -35296836 + GA-rich Low_complexity Low_complexity 2 65 0 972 265 33 22 chr15 50398953 50399225 -35296529 + Charlie8 DNA MER1_type 2 276 -2141 1069 153 0 0 chr15 50399365 50399522 -35296232 - AluJb SINE Alu -20 292 136 315 0 0 0 chr15 50399522 50399557 -35296197 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 0 0 0 chr15 50399556 50399584 -35296170 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 915 285 103 39 chr15 50399686 50401104 -35294650 + L1ME4a LINE L1 3959 5477 -749 486 299 47 33 chr15 50401208 50401569 -35294185 + L1ME4a LINE L1 5657 6022 -99 228 293 0 27 chr15 50402126 50402201 -35293553 - MIR3 SINE MIR -27 181 109 327 286 194 6 chr15 50402400 50402575 -35293179 + L2 LINE L2 2882 3089 -224 1811 166 21 0 chr15 50402739 50403028 -35292726 - AluSx SINE Alu -17 295 1 2465 75 3 0 chr15 50403595 50403901 -35291853 - AluY SINE Alu -4 307 1 2746 73 25 3 chr15 50404026 50404382 -35291372 + THE1B LTR MaLR 1 364 0 226 246 98 0 chr15 50405784 50405845 -35289909 - MIR3 SINE MIR -37 171 105 254 331 116 20 chr15 50405991 50406242 -35289512 - L2 LINE L2 -797 2517 2243 598 179 34 0 chr15 50408016 50408133 -35287621 - MER97a DNA MER1_type? -758 136 16 207 69 0 0 chr15 50408462 50408491 -35287263 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 181 348 11 0 chr15 50409163 50409255 -35286499 + L3 LINE CR1 988 1080 -497 391 308 52 34 chr15 50409358 50409498 -35286256 + L3 LINE CR1 1231 1367 -210 746 194 40 40 chr15 50409498 50409673 -35286081 + MER5B DNA MER1_type 4 178 0 391 308 52 34 chr15 50409673 50409857 -35285897 + L3 LINE CR1 1367 1561 -16 232 311 96 37 chr15 50410632 50410767 -35284987 + MIR SINE MIR 49 191 -71 3389 225 89 57 chr15 50410783 50410826 -35284928 + L1MDa LINE L1 2114 2154 -4386 291 54 0 0 chr15 50410826 50410863 -35284891 + (TA)n Simple_repeat Simple_repeat 1 37 0 3389 225 89 57 chr15 50410863 50410970 -35284784 + L1MDa LINE L1 2154 2256 -4284 558 175 44 18 chr15 50410970 50411084 -35284670 - L1MC1 LINE L1 0 6333 6217 3389 225 89 57 chr15 50411084 50412410 -35283344 + L1MDa LINE L1 2256 3634 -2906 1249 198 30 8 chr15 50412431 50412694 -35283060 + L1ME1 LINE L1 5733 6001 -165 268 250 10 90 chr15 50413758 50413815 -35281939 + MIR SINE MIR 49 96 -166 505 92 0 13 chr15 50413815 50413891 -35281863 + MADE1 DNA Mariner 4 78 -2 268 250 10 90 chr15 50413891 50413933 -35281821 + MIR SINE MIR 96 140 -122 228 298 0 0 chr15 50414376 50414433 -35281321 - L3 LINE CR1 -7 1570 1514 379 222 11 11 chr15 50414620 50414710 -35281044 - HsTC2 DNA Tc2 -1801 97 8 298 265 94 53 chr15 50414754 50414924 -35280830 - MIR3 SINE MIR -1 207 31 1202 190 0 52 chr15 50415262 50415494 -35280260 - AluJo SINE Alu -92 220 1 390 292 154 10 chr15 50415521 50415716 -35280038 - MIR SINE MIR -31 231 9 2331 95 20 7 chr15 50416534 50416838 -35278916 + AluSq SINE Alu 1 308 -5 1868 154 0 14 chr15 50416930 50417216 -35278538 + AluJb SINE Alu 1 282 -30 214 271 0 17 chr15 50418359 50418418 -35277336 + GA-rich Low_complexity Low_complexity 3 60 0 45 55 0 0 chr15 50418454 50418527 -35277227 + AT_rich Low_complexity Low_complexity 1 73 0 898 303 149 36 chr15 50418987 50419644 -35276110 - L3 LINE CR1 -5 1572 842 269 303 101 0 chr15 50419742 50419861 -35275893 - L2 LINE L2 -1 3312 3182 30 59 0 0 chr15 50420296 50420347 -35275407 + AT_rich Low_complexity Low_complexity 1 51 0 588 259 21 0 chr15 50422463 50422606 -35273148 + MER103 DNA DNA 15 160 -6 278 344 53 48 chr15 50423976 50424300 -35271454 + L2 LINE L2 2894 3263 -9 215 282 0 28 chr15 50424849 50424920 -35270834 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 213 163 20 20 chr15 50425102 50425151 -35270603 + (TATG)n Simple_repeat Simple_repeat 3 51 0 206 175 0 0 chr15 50425875 50425915 -35269839 + MIR SINE MIR 217 256 -6 2707 51 0 0 chr15 50425930 50426241 -35269513 - AluY SINE Alu 0 311 1 1042 302 56 53 chr15 50426672 50427666 -35268088 - L1M4 LINE L1 -1628 4518 3522 476 270 60 76 chr15 50428704 50428889 -35266865 + MER5B DNA MER1_type 2 172 -6 325 301 97 0 chr15 50429056 50429197 -35266557 - MIR SINE MIR -63 145 28 423 268 153 13 chr15 50429208 50429365 -35266389 - MER5A DNA MER1_type 0 189 11 304 330 0 0 chr15 50429605 50429693 -35266061 - L2 LINE L2 0 3313 3226 183 361 50 29 chr15 50429830 50430107 -35265647 + L3 LINE CR1 932 1214 -363 253 188 21 0 chr15 50431482 50431530 -35264224 - MER20 DNA MER1_type 0 219 171 842 197 18 41 chr15 50431558 50431776 -35263978 - MER20 DNA MER1_type -1 218 6 460 301 13 13 chr15 50431843 50431999 -35263755 + MER5B DNA MER1_type 17 172 -6 693 280 9 40 chr15 50432598 50432823 -35262931 + MIR SINE MIR 5 222 -40 2045 152 3 0 chr15 50433961 50434271 -35261483 - AluJo SINE Alu -1 311 1 333 235 0 84 chr15 50434571 50434601 -35261153 + MIR SINE MIR 122 153 -109 2400 103 0 0 chr15 50434601 50434912 -35260842 + AluSq SINE Alu 1 311 -2 333 235 0 84 chr15 50434912 50435000 -35260754 + MIR SINE MIR 153 230 -32 216 0 0 0 chr15 50436061 50436085 -35259669 + (CA)n Simple_repeat Simple_repeat 2 25 0 681 240 69 32 chr15 50436472 50436718 -35259036 - MIR SINE MIR -6 256 2 317 272 185 12 chr15 50436718 50436834 -35258920 + MIR SINE MIR 9 162 -100 2300 107 0 3 chr15 50436834 50437143 -35258611 + AluSx SINE Alu 1 308 -4 317 272 185 12 chr15 50437143 50437186 -35258568 + MIR SINE MIR 162 196 -66 2228 125 0 7 chr15 50437576 50437881 -35257873 - AluSx SINE Alu -9 303 1 716 129 180 51 chr15 50438326 50438423 -35257331 + L1MB3 LINE L1 5972 6055 -128 2411 87 0 3 chr15 50438423 50438721 -35257033 - AluSq SINE Alu -16 297 1 716 129 180 51 chr15 50438721 50438801 -35256953 + L1MB3 LINE L1 6055 6172 -11 783 246 47 100 chr15 50439469 50439899 -35255855 - MLT1I LTR MaLR 0 409 3 219 69 0 0 chr15 50440531 50440560 -35255194 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 1898 153 16 16 chr15 50440767 50441074 -35254680 - AluJb SINE Alu -5 307 1 216 316 93 22 chr15 50441474 50441613 -35254141 + L2 LINE L2 3146 3294 -19 327 65 0 0 chr15 50441670 50441716 -35254038 + (CA)n Simple_repeat Simple_repeat 2 47 0 372 270 11 11 chr15 50441718 50441807 -35253947 - L3 LINE CR1 -100 1477 1389 443 234 9 9 chr15 50441808 50441915 -35253839 - MIR SINE MIR -2 260 154 274 347 71 24 chr15 50441944 50442114 -35253640 - L3 LINE CR1 -217 1360 1183 296 311 28 28 chr15 50442218 50442324 -35253430 - MIR SINE MIR -146 116 11 209 315 192 8 chr15 50442720 50442850 -35252904 + L3 LINE CR1 1311 1464 -113 6380 29 0 0 chr15 50442960 50443657 -35252097 + L1PA3 LINE L1 5459 6155 0 557 271 89 20 chr15 50443662 50443865 -35251889 + MIR SINE MIR 20 236 -26 2507 107 0 0 chr15 50444015 50444343 -35251411 - L1PA13 LINE L1 -19 6144 5817 257 233 17 0 chr15 50444872 50444932 -35250822 + MIR3 SINE MIR 148 208 0 2168 130 101 17 chr15 50445874 50446220 -35249534 - THE1C LTR MaLR 0 375 1 308 252 155 10 chr15 50446769 50446872 -35248882 + MIR SINE MIR 32 149 -113 430 298 149 6 chr15 50448747 50448953 -35246801 + MIR SINE MIR 10 242 -20 307 320 46 7 chr15 50449515 50449668 -35246086 - MIR SINE MIR -9 253 95 214 206 32 16 chr15 50449848 50449911 -35245843 + CT-rich Low_complexity Low_complexity 1 64 0 2216 101 0 10 chr15 50449959 50450257 -35245497 - AluSq SINE Alu -5 308 14 1478 188 27 0 chr15 50450268 50450560 -35245194 - L1P LINE L1 -958 5188 4889 856 226 86 0 chr15 50450815 50451001 -35244753 + MER58A DNA MER1_type 20 221 -3 461 196 179 6 chr15 50451012 50451167 -35244587 - MER5A DNA MER1_type 0 189 4 2978 88 31 5 chr15 50451197 50451585 -35244169 + MER48 LTR ERV1 1 398 0 261 298 120 13 chr15 50451841 50452066 -35243688 + L2 LINE L2 2424 2672 -642 264 241 0 0 chr15 50453795 50453849 -35241905 - L2 LINE L2 -2 3270 3217 1336 160 28 5 chr15 50454095 50454308 -35241446 + MER20 DNA MER1_type 1 218 -1 1339 189 9 0 chr15 50454684 50454906 -35240848 - MER58A DNA MER1_type 0 224 1 217 258 79 67 chr15 50454921 50455010 -35240744 + L2 LINE L2 3215 3304 -9 664 229 176 5 chr15 50455095 50455300 -35240454 - L1ME LINE L1 -351 5770 5531 298 366 35 15 chr15 50456195 50456397 -35239357 - MIR SINE MIR -8 254 49 274 351 33 10 chr15 50456588 50456701 -35239053 - MIR SINE MIR -90 118 1 639 249 27 26 chr15 50456819 50457044 -35238710 + L1MD3 LINE L1 7582 7981 -1 352 288 170 24 chr15 50457344 50457556 -35238198 + MIR SINE MIR 12 254 -8 195 347 27 13 chr15 50457796 50457871 -35237883 + L2 LINE L2 3112 3187 -85 1604 191 31 3 chr15 50460087 50460375 -35235379 - AluJo SINE Alu -16 296 1 201 269 67 47 chr15 50460905 50461054 -35234700 + L2 LINE L2 3033 3184 -129 2109 127 0 0 chr15 50462051 50462360 -35233394 - AluSx SINE Alu 0 309 1 684 234 68 16 chr15 50462505 50462697 -35233057 - MIR SINE MIR -28 234 33 219 310 69 28 chr15 50463367 50463512 -35232242 + MIR SINE MIR 106 256 -6 1577 201 3 13 chr15 50463630 50463938 -35231816 + AluJo SINE Alu 1 305 -7 338 104 0 0 chr15 50464176 50464224 -35231530 - L1MB7 LINE L1 -19 6165 6118 2503 64 0 0 chr15 50464650 50464945 -35230809 - AluY SINE Alu -16 295 1 5530 140 18 8 chr15 50465164 50466141 -35229613 - L1PA13 LINE L1 -1 6162 5175 5305 165 5 11 chr15 50466241 50467206 -35228548 - L1P LINE L1 -793 5353 4395 1187 65 39 0 chr15 50467268 50467422 -35228332 - L1PA13 LINE L1 -4 6159 6000 532 297 72 14 chr15 50468650 50468940 -35226814 - L1ME4a LINE L1 -109 6012 5706 285 319 57 68 chr15 50468943 50469328 -35226426 + HAL1 LINE L1 1 381 -2126 292 285 39 39 chr15 50469589 50469719 -35226035 + HAL1 LINE L1 827 956 -1551 584 300 134 21 chr15 50469731 50470014 -35225740 - L1ME4a LINE L1 -404 5717 5403 547 72 0 0 chr15 50470206 50470275 -35225479 - L1PA7 LINE L1 -6 6148 6080 235 272 12 12 chr15 50470295 50470376 -35225378 - L1ME4a LINE L1 -2119 4027 3947 3339 44 3 0 chr15 50470868 50471251 -35224503 - L1PA6 LINE L1 -1 6153 5770 1428 43 6 0 chr15 50471298 50471462 -35224292 - L1PA5 LINE L1 -15 6139 5975 2153 131 0 0 chr15 50472499 50472797 -35222957 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr15 50473874 50473898 -35221856 + (T)n Simple_repeat Simple_repeat 1 24 0 351 202 177 40 chr15 50474028 50474152 -35221602 - L2 LINE L2 -3 3269 3129 1913 151 23 0 chr15 50475372 50475671 -35220083 - AluSx SINE Alu -6 306 1 755 244 72 79 chr15 50475737 50476109 -35219645 - LTR37B LTR ERV1 -1 467 97 2263 112 3 3 chr15 50476109 50476421 -35219333 - AluJb SINE Alu 0 312 1 755 244 72 79 chr15 50476421 50476453 -35219301 - LTR37B LTR ERV1 -371 97 66 198 340 0 0 chr15 50477087 50477134 -35218620 - MIR SINE MIR -59 149 103 2830 147 6 31 chr15 50477136 50477619 -35218135 - LTR44 LTR ERV1 0 519 49 2085 133 9 12 chr15 50477623 50477947 -35217807 - MER49 LTR ERV1 -600 323 1 646 199 15 22 chr15 50478853 50478989 -35216765 + L1MB3 LINE L1 6047 6181 -2 327 169 7 112 chr15 50479341 50479386 -35216368 - MER5A DNA MER1_type -84 105 57 1674 109 30 88 chr15 50479386 50479424 -35216330 - AluJb SINE Alu 0 312 273 351 0 0 0 chr15 50479424 50479463 -35216291 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1674 109 30 88 chr15 50479463 50479755 -35215999 - AluJb SINE Alu -39 273 1 327 169 7 112 chr15 50479755 50479826 -35215928 - MER5A DNA MER1_type -132 57 4 203 355 261 13 chr15 50480629 50480928 -35214826 - L3 LINE CR1 -48 1529 1157 1020 130 0 0 chr15 50481383 50481537 -35214217 - FRAM SINE Alu -1 175 22 337 333 44 49 chr15 50481583 50481787 -35213967 - L1ME LINE L1 -400 5721 5519 249 276 41 97 chr15 50482275 50482420 -35213334 + MIR3 SINE MIR 6 142 -66 182 306 20 0 chr15 50482680 50482729 -35213025 - L2 LINE L2 -12 3260 3211 2365 107 0 25 chr15 50483798 50484116 -35211638 - AluSx SINE Alu -2 310 1 279 0 0 0 chr15 50484193 50484224 -35211530 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2083 207 21 78 chr15 50484380 50484955 -35210799 - MER34 LTR ERV1 0 542 1 236 340 82 49 chr15 50485397 50485877 -35209877 - L2 LINE L2 -92 3221 2724 1744 143 20 31 chr15 50486232 50486525 -35209229 + AluJb SINE Alu 6 295 -17 241 310 127 19 chr15 50486812 50486970 -35208784 - MIR SINE MIR -87 175 1 965 169 0 17 chr15 50487152 50487324 -35208430 - FRAM SINE Alu -10 166 1 351 283 33 8 chr15 50487847 50487967 -35207787 + MIR SINE MIR 2 124 -138 * 419 236 100 0 chr15 50487962 50488072 -35207682 - L2 LINE L2 -2 3311 3191 341 315 45 0 chr15 50488077 50488188 -35207566 + MIR SINE MIR 124 239 -23 501 290 6 30 chr15 50488584 50488753 -35207001 + L1ME LINE L1 5545 5709 -412 623 269 57 26 chr15 50489056 50489249 -35206505 + MIR SINE MIR 58 256 -6 264 286 0 0 chr15 50489851 50489907 -35205847 + MLT1K LTR MaLR 176 231 -357 282 268 78 28 chr15 50490494 50490922 -35204832 - L1MDa LINE L1 -3684 2856 2404 24 53 0 0 chr15 50491160 50491198 -35204556 + AT_rich Low_complexity Low_complexity 1 38 0 917 159 0 18 chr15 50491225 50491388 -35204366 - L1MB7 LINE L1 -16 6168 6009 274 338 54 14 chr15 50491414 50491562 -35204192 - HAL1 LINE L1 -739 1768 1615 279 0 0 0 chr15 50491877 50491908 -35203846 + (CA)n Simple_repeat Simple_repeat 2 32 0 389 305 15 60 chr15 50492127 50492327 -35203427 - MIR3 SINE MIR -14 194 4 2196 126 0 7 chr15 50492519 50492813 -35202941 + AluSx SINE Alu 1 292 -20 885 127 0 0 chr15 50493161 50493287 -35202467 + AluJ SINE Alu 1 126 -176 856 125 8 0 chr15 50493287 50493407 -35202347 - AluSg/x SINE Alu -18 292 172 475 159 0 0 chr15 50493407 50493476 -35202278 - AluS SINE Alu -243 70 2 1049 164 0 87 chr15 50493476 50493515 -35202239 + AluJ SINE Alu 108 149 -163 2059 155 0 7 chr15 50493515 50493825 -35201929 + AluJb SINE Alu 1 308 -4 1049 164 0 87 chr15 50493825 50493993 -35201761 + AluJ SINE Alu 149 297 -15 356 248 229 25 chr15 50495147 50495304 -35200450 - MER5A DNA MER1_type 0 189 1 737 174 8 0 chr15 50495354 50495475 -35200279 + FLAM_C SINE Alu 2 123 -10 225 0 0 0 chr15 50495523 50495548 -35200206 + (TG)n Simple_repeat Simple_repeat 2 26 0 224 200 0 0 chr15 50496082 50496117 -35199637 + L3 LINE CR1 1435 1469 -108 934 268 95 30 chr15 50496468 50496867 -35198887 + L1ME1 LINE L1 5724 6148 -18 380 342 38 22 chr15 50496908 50497092 -35198662 + L1MC4a LINE L1 6081 6267 -1541 300 262 55 79 chr15 50497305 50497469 -35198285 + L1MC4a LINE L1 6499 6658 -1150 1497 239 101 79 chr15 50497491 50498287 -35197467 + L1MC5 LINE L1 6754 7566 -395 2254 85 6 44 chr15 50498287 50498603 -35197151 - AluY SINE Alu -6 305 2 1621 123 18 89 chr15 50498653 50499215 -35196539 + SVA Other Other 436 957 -429 611 242 20 85 chr15 50499354 50499602 -35196152 + L1MC5 LINE L1 7337 7568 -393 198 0 0 0 chr15 50499602 50499624 -35196130 + (T)n Simple_repeat Simple_repeat 1 22 0 6897 100 18 141 chr15 50499632 50501145 -35194609 + SVA Other Other 61 1386 0 2280 100 7 3 chr15 50501169 50501468 -35194286 + AluSp SINE Alu 1 300 -13 189 0 0 0 chr15 50501548 50501569 -35194185 + (A)n Simple_repeat Simple_repeat 1 21 0 2223 100 0 0 chr15 50501588 50501867 -35193887 + AluSx SINE Alu 18 296 -16 868 228 46 20 chr15 50501884 50502187 -35193567 + L1MC5 LINE L1 7603 7913 -48 476 313 43 60 chr15 50503505 50503738 -35192016 + L1MC/D LINE L1 4330 4558 -1588 372 307 94 15 chr15 50503778 50503810 -35191944 + L1MC/D LINE L1 4737 4765 -1381 457 110 96 0 chr15 50503810 50503883 -35191871 + MADE1 DNA Mariner 1 80 0 372 307 94 15 chr15 50503883 50504052 -35191702 + L1MC/D LINE L1 4765 4954 -1192 1892 165 33 7 chr15 50504125 50504428 -35191326 + AluJb SINE Alu 1 311 -1 231 399 37 0 chr15 50504462 50504625 -35191129 + HsTC2 DNA Tc2 493 661 -1237 586 253 6 23 chr15 50504698 50504872 -35190882 + HsTC2 DNA Tc2 671 841 -1057 2188 128 7 0 chr15 50505230 50505528 -35190226 + AluJb SINE Alu 1 300 -12 492 286 76 40 chr15 50505539 50505840 -35189914 + L1MC/D LINE L1 5381 5692 -2116 645 200 82 0 chr15 50505857 50505992 -35189762 + FAM SINE Alu 27 172 -13 2213 99 7 3 chr15 50506065 50506358 -35189396 + AluSq SINE Alu 1 294 -19 756 270 118 61 chr15 50506543 50506636 -35189118 + L1ME3A LINE L1 4562 4648 -1514 1908 127 7 11 chr15 50506636 50506942 -35188812 + AluSx SINE Alu 9 313 0 756 270 118 61 chr15 50506942 50507838 -35187916 + L1ME3A LINE L1 4648 5629 -533 447 279 147 49 chr15 50507858 50508229 -35187525 + L1ME3A LINE L1 5687 5926 -244 359 268 56 62 chr15 50509156 50509335 -35186419 - MIR SINE MIR -57 205 28 465 289 86 20 chr15 50510595 50510792 -35184962 + L3 LINE CR1 1243 1452 -125 506 305 279 25 chr15 50512294 50513011 -35182743 + L3 LINE CR1 621 1519 -58 231 363 19 3 chr15 50514992 50515173 -35180581 + L3 LINE CR1 432 664 -913 442 170 0 111 chr15 50515245 50515293 -35180461 - L1MB4 LINE L1 0 6180 6128 2105 120 10 3 chr15 50515293 50515593 -35180161 - AluSx SINE Alu -10 302 1 442 170 0 111 chr15 50515593 50515679 -35180075 - L1MB4 LINE L1 -52 6128 6061 423 264 161 19 chr15 50515707 50515862 -35179892 - MIR SINE MIR -28 234 58 278 286 45 70 chr15 50516060 50516259 -35179495 + L3 LINE CR1 973 1166 -411 190 343 59 10 chr15 50516335 50516437 -35179317 + L3 LINE CR1 1325 1431 -146 1858 147 18 3 chr15 50516437 50516723 -35179031 + AluSg SINE Alu 1 290 -20 344 271 101 89 chr15 50516755 50516816 -35178938 + L1MC4 LINE L1 7692 7751 -291 2259 117 0 0 chr15 50516816 50517114 -35178640 + AluSx SINE Alu 1 298 -14 344 271 101 89 chr15 50517114 50517399 -35178355 + L1MC4 LINE L1 7751 8042 0 1449 155 108 27 chr15 50517616 50517874 -35177880 + AluJo SINE Alu 1 279 -33 254 154 19 19 chr15 50517874 50517926 -35177828 + GA-rich Low_complexity Low_complexity 3 54 0 680 132 36 6 chr15 50517937 50518104 -35177650 + GA-rich Low_complexity Low_complexity 3 174 0 452 300 100 0 chr15 50518386 50518556 -35177198 - MIR SINE MIR -19 243 57 452 267 87 27 chr15 50518575 50518725 -35177029 - MER5B DNA MER1_type -19 159 1 480 125 136 0 chr15 50518787 50518875 -35176879 - MER5A DNA MER1_type -83 106 7 2472 92 0 0 chr15 50519186 50519489 -35176265 - AluSx SINE Alu -9 303 1 1291 141 0 0 chr15 50519499 50519684 -35176070 + AluSg/x SINE Alu 113 297 -13 377 272 62 87 chr15 50519757 50520066 -35175688 - MLT1J LTR MaLR -193 318 18 352 239 0 0 chr15 50520207 50520274 -35175480 - L2 LINE L2 -5 3308 3242 347 351 27 27 chr15 50520470 50520655 -35175099 - MIR SINE MIR -55 207 23 678 225 0 0 chr15 50520875 50521053 -35174701 + (CA)n Simple_repeat Simple_repeat 1 178 0 287 214 24 36 chr15 50521442 50521526 -35174228 - MLT1H1 LTR MaLR -57 498 416 2207 107 7 0 chr15 50522090 50522404 -35173350 - AluSx SINE Alu 0 316 1 274 240 38 2 chr15 50522536 50522627 -35173127 - MLT1H LTR MaLR -377 172 93 667 269 204 31 chr15 50522740 50522927 -35172827 - L2 LINE L2 0 3313 3160 1710 171 7 30 chr15 50522927 50523231 -35172523 + AluJo SINE Alu 14 310 -2 667 269 204 31 chr15 50523231 50523532 -35172222 - L2 LINE L2 -153 3160 2710 22 35 0 0 chr15 50524155 50524184 -35171570 + AT_rich Low_complexity Low_complexity 1 29 0 38088 32 2 2 chr15 50524229 50529763 -35165991 - L1PA3 LINE L1 0 6155 623 678 25 0 0 chr15 50529767 50529847 -35165907 - L1PA3 LINE L1 -6054 92 13 585 162 0 22 chr15 50530236 50530360 -35165394 + CT-rich Low_complexity Low_complexity 1 123 -10 1954 148 14 3 chr15 50530360 50530650 -35165104 - AluSx SINE Alu -19 293 1 585 162 0 22 chr15 50530650 50530661 -35165093 + CT-rich Low_complexity Low_complexity 123 133 0 1943 145 37 0 chr15 50530662 50530958 -35164796 - AluJb SINE Alu -5 307 1 2365 107 0 3 chr15 50530966 50531276 -35164478 - AluSq SINE Alu -4 309 1 2386 94 0 0 chr15 50531776 50532074 -35163680 + AluY SINE Alu 1 298 -13 220 236 29 11 chr15 50532688 50532766 -35162988 - MIR SINE MIR -89 119 75 2282 148 108 7 chr15 50533168 50533602 -35162152 + LTR12 LTR ERV1 1 478 -236 204 271 271 10 chr15 50533747 50533843 -35161911 - L2 LINE L2 -10 3303 3183 279 211 102 39 chr15 50534526 50534654 -35161100 - L1MC5 LINE L1 -186 7775 7640 1082 97 0 0 chr15 50534718 50534887 -35160867 - AluSg/x SINE Alu 0 320 152 495 194 16 47 chr15 50534895 50535024 -35160730 + MIR SINE MIR 138 262 0 2058 137 3 13 chr15 50535103 50535418 -35160336 + AluJo SINE Alu 1 312 0 248 329 51 13 chr15 50536514 50536672 -35159082 - L1ME4a LINE L1 -202 5919 5756 1889 151 0 0 chr15 50536908 50537187 -35158567 + AluJo SINE Alu 32 310 -2 2433 88 0 3 chr15 50537230 50537537 -35158217 + AluSx SINE Alu 1 306 -6 216 265 151 15 chr15 50538600 50538764 -35156990 - MIR SINE MIR -53 209 25 510 307 0 0 chr15 50539208 50539335 -35156419 + MIR SINE MIR 65 191 -71 580 319 40 13 chr15 50540388 50540615 -35155139 - MIR SINE MIR -9 253 21 2145 117 0 10 chr15 50541233 50541532 -35154222 + AluSx SINE Alu 1 296 -16 243 309 83 48 chr15 50542325 50542555 -35153199 - L2 LINE L2 -1366 1948 1711 207 83 62 42 chr15 50542656 50542704 -35153050 + (CCCTG)n Simple_repeat Simple_repeat 3 51 0 181 271 71 82 chr15 50545465 50545550 -35150204 - L2 LINE L2 -27 3286 3203 263 315 94 25 chr15 50545698 50545933 -35149821 - L2 LINE L2 -337 2977 2727 487 261 119 31 chr15 50546891 50547117 -35148637 + MER112 DNA MER1_type 8 253 -7 2628 46 0 0 chr15 50547480 50547782 -35147972 - AluY SINE Alu -9 302 1 22 70 0 0 chr15 50547953 50547996 -35147758 + AT_rich Low_complexity Low_complexity 1 43 0 523 172 20 20 chr15 50548002 50548101 -35147653 - Tigger5 DNA MER2_type 0 2323 2225 280 125 0 0 chr15 50548116 50548156 -35147598 - Tigger5 DNA MER2_type -2244 79 40 2627 52 0 0 chr15 50548312 50548619 -35147135 - AluY SINE Alu -4 307 1 1842 227 137 15 chr15 50548902 50549424 -35146330 + L1ME3 LINE L1 5538 6115 -47 212 171 0 0 chr15 50549440 50549481 -35146273 + A-rich Low_complexity Low_complexity 1 41 0 2206 112 3 0 chr15 50549821 50550117 -35145637 - AluSp SINE Alu -3 310 14 275 257 110 28 chr15 50550203 50550312 -35145442 - MIR SINE MIR -37 225 108 448 198 47 0 chr15 50551974 50552060 -35143694 + L2 LINE L2 3181 3270 -43 2365 102 0 0 chr15 50552355 50552660 -35143094 + AluSx SINE Alu 1 305 -7 181 350 29 64 chr15 50553008 50553148 -35142606 - L2 LINE L2 -196 3076 2942 * 235 257 40 27 chr15 50553126 50553200 -35142554 - MIR SINE MIR -69 139 65 21 0 0 0 chr15 50556454 50556475 -35139279 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr15 50557320 50557348 -35138406 + (T)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr15 50558833 50558857 -35136897 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 442 320 73 6 chr15 50559615 50559793 -35135961 + MIR3 SINE MIR 16 205 -3 345 313 91 49 chr15 50559880 50560317 -35135437 + L2 LINE L2 530 1041 -2273 813 179 50 28 chr15 50561926 50562105 -35133649 - MER3 DNA MER1_type -25 184 2 225 0 0 0 chr15 50562293 50562318 -35133436 + (T)n Simple_repeat Simple_repeat 1 25 0 977 226 52 0 chr15 50562532 50562744 -35133010 + MER58A DNA MER1_type 1 223 -1 274 356 75 11 chr15 50562909 50563187 -35132567 + L1MEd LINE L1 607 902 -5303 304 250 96 39 chr15 50563208 50563312 -35132442 + L1MEd LINE L1 1065 1174 -5031 1878 130 4 0 chr15 50563314 50563576 -35132178 + AluSq SINE Alu 1 263 -50 797 278 57 16 chr15 50563581 50564020 -35131734 + L1MEd LINE L1 1263 1719 -4677 4100 216 116 88 chr15 50564290 50565232 -35130522 + L1MEd LINE L1 2070 2984 -3255 204 67 0 0 chr15 50565232 50565262 -35130492 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4100 216 116 88 chr15 50565262 50565810 -35129944 + L1MEd LINE L1 2984 3515 -2724 1624 174 36 20 chr15 50565810 50566115 -35129639 + AluJb SINE Alu 2 311 -1 4100 216 116 88 chr15 50566115 50568353 -35127401 + L1MEd LINE L1 3515 6231 -8 492 214 45 9 chr15 50569330 50569442 -35126312 - Charlie1a DNA MER1_type -1292 163 48 21 0 0 0 chr15 50570252 50570273 -35125481 + AT_rich Low_complexity Low_complexity 1 21 0 1725 181 7 13 chr15 50570719 50571029 -35124725 - AluJo SINE Alu -4 308 1 616 315 96 37 chr15 50571851 50571947 -35123807 - L1M4 LINE L1 -1568 4578 4489 2382 73 0 7 chr15 50571947 50572250 -35123504 - AluY SINE Alu -10 301 1 616 315 96 37 chr15 50572250 50572943 -35122811 - L1M4 LINE L1 -1657 4489 3742 1459 135 31 76 chr15 50572957 50573246 -35122508 - AluJb SINE Alu -6 306 31 655 214 78 21 chr15 50573379 50573421 -35122333 - MIR SINE MIR -37 225 187 2144 114 0 19 chr15 50573421 50573728 -35122026 + AluSx SINE Alu 1 301 -11 655 214 78 21 chr15 50573728 50573877 -35121877 - MIR SINE MIR -75 187 23 2382 84 0 3 chr15 50573908 50574205 -35121549 + AluY SINE Alu 1 296 -15 2137 115 0 3 chr15 50574477 50574792 -35120962 + AluSq SINE Alu 1 314 0 1553 170 71 7 chr15 50574819 50575101 -35120653 - AluJb SINE Alu -12 300 1 220 336 48 29 chr15 50575441 50575545 -35120209 + L2 LINE L2 2976 3081 -191 2367 234 62 36 chr15 50576745 50577420 -35118334 + Charlie1a DNA MER1_type 1 693 -762 209 231 0 0 chr15 50579197 50579236 -35116518 - L2 LINE L2 -10 3303 3265 720 175 76 82 chr15 50580447 50580497 -35115257 + MER5B DNA MER1_type 3 52 -126 2209 122 3 0 chr15 50580497 50580783 -35114971 + AluSq SINE Alu 1 290 -23 198 0 0 0 chr15 50580783 50580805 -35114949 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2209 122 3 0 chr15 50580805 50580822 -35114932 + AluSq SINE Alu 290 305 -8 720 175 76 82 chr15 50580822 50580942 -35114812 + MER5B DNA MER1_type 52 172 -6 2159 138 3 0 chr15 50581813 50582124 -35113630 + AluSx SINE Alu 1 312 0 2418 88 3 0 chr15 50583684 50583989 -35111765 - AluSp SINE Alu -7 306 1 1792 149 22 0 chr15 50584142 50584418 -35111336 + AluSx SINE Alu 1 282 -30 306 0 0 0 chr15 50584418 50584452 -35111302 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 377 165 289 0 chr15 50584468 50584565 -35111189 - MER5C DNA MER1_type -199 125 1 529 279 120 11 chr15 50585177 50585399 -35110355 + MIR SINE MIR 5 246 -16 231 88 0 0 chr15 50586449 50586483 -35109271 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 2217 106 0 0 chr15 50586483 50586766 -35108988 - AluSx SINE Alu -29 283 1 2361 106 0 0 chr15 50587359 50587662 -35108092 + AluSq SINE Alu 1 303 -10 200 300 138 0 chr15 50588232 50588312 -35107442 + MIR SINE MIR 159 249 -13 682 219 181 38 chr15 50588695 50588932 -35106822 - L1ME3A LINE L1 -5 6165 5895 290 135 243 0 chr15 50588935 50589009 -35106745 - L1ME3A LINE L1 -219 5951 5860 6060 33 0 0 chr15 50589089 50589900 -35105854 + L1PA5 LINE L1 5144 5954 -200 709 70 0 0 chr15 50589900 50589986 -35105768 + 5S rRNA rRNA 1 86 -35 1944 24 0 0 chr15 50589986 50590198 -35105556 + L1PA5 LINE L1 5943 6154 0 311 258 45 68 chr15 50590836 50590968 -35104786 - MER112 DNA MER1_type -130 130 2 2209 125 3 6 chr15 50592012 50592323 -35103431 + AluSq SINE Alu 1 310 -3 21 36 0 0 chr15 50592344 50592372 -35103382 + AT_rich Low_complexity Low_complexity 1 28 0 245 110 55 0 chr15 50592761 50592834 -35102920 + (TA)n Simple_repeat Simple_repeat 2 78 0 258 105 0 0 chr15 50592899 50592937 -35102817 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 719 296 66 72 chr15 50592940 50593182 -35102572 - L2 LINE L2 -1 3312 3073 2221 101 10 3 chr15 50593182 50593479 -35102275 + AluSx SINE Alu 1 299 -13 719 296 66 72 chr15 50593479 50593723 -35102031 - L2 LINE L2 -240 3073 2829 1932 128 6 35 chr15 50594244 50594563 -35101191 - AluSx SINE Alu -2 310 1 1929 195 64 48 chr15 50594575 50594996 -35100758 - Charlie1a DNA MER1_type -1321 1440 1006 875 214 0 0 chr15 50594996 50595169 -35100585 - L1PB4 LINE L1 0 6156 5984 1929 195 64 48 chr15 50595169 50595310 -35100444 - Charlie1a DNA MER1_type -1755 1006 869 3604 208 49 18 chr15 50595311 50596306 -35099448 + L1MB7 LINE L1 5149 6172 -12 1169 209 268 0 chr15 50596319 50596659 -35099095 - Charlie1a DNA MER1_type -568 887 457 2201 150 51 57 chr15 50596670 50597163 -35098591 + L1MB7 LINE L1 5676 6165 -19 1249 248 159 10 chr15 50597166 50597574 -35098180 - Charlie1a DNA MER1_type -986 469 1 623 198 50 0 chr15 50597714 50597835 -35097919 + FLAM_A SINE Alu 2 128 -5 2187 117 0 0 chr15 50598106 50598405 -35097349 + AluSg SINE Alu 1 299 -11 225 0 0 0 chr15 50598405 50598430 -35097324 + (CA)n Simple_repeat Simple_repeat 2 26 0 436 319 48 16 chr15 50598483 50599019 -35096735 + L1MD3 LINE L1 4884 5442 -743 396 255 273 6 chr15 50599023 50599126 -35096628 + L1MD3 LINE L1 5545 5619 -2189 351 0 0 0 chr15 50599126 50599165 -35096589 + (CA)n Simple_repeat Simple_repeat 1 39 0 396 255 273 6 chr15 50599165 50599222 -35096532 + L1MD3 LINE L1 5619 5748 -2060 1850 208 38 81 chr15 50599270 50599936 -35095818 - MLT1E2 LTR MaLR 0 626 1 344 228 0 97 chr15 50599936 50600050 -35095704 + L1MD3 LINE L1 5842 5944 -1864 394 213 111 0 chr15 50600203 50600311 -35095443 - L1MC4 LINE L1 -971 7071 6952 * 895 211 99 23 chr15 50600310 50600899 -35094855 + L1MD3 LINE L1 7077 7815 -180 332 145 36 48 chr15 50600893 50600976 -35094778 + L1MC4 LINE L1 7961 8042 0 * 256 173 19 19 chr15 50601146 50601198 -35094556 - L2 LINE L2 0 3313 3262 560 353 52 10 chr15 50601210 50601499 -35094255 + MLT1J LTR MaLR 1 301 -210 939 202 106 53 chr15 50601900 50602202 -35093552 + MER2 DNA MER2_type 1 318 -27 1726 172 10 10 chr15 50602407 50602709 -35093045 + AluJb SINE Alu 1 302 -10 1619 151 72 17 chr15 50602735 50603026 -35092728 + AluJb SINE Alu 4 310 -2 22 56 0 0 chr15 50603031 50603067 -35092687 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr15 50603215 50603256 -35092498 + AT_rich Low_complexity Low_complexity 1 41 0 842 107 57 19 chr15 50603768 50603927 -35091827 + L1MA4A LINE L1 6133 6297 -6 492 257 65 78 chr15 50604167 50604226 -35091528 - L1MC4a LINE L1 -319 5802 5744 2369 69 0 20 chr15 50604226 50604532 -35091222 - AluSx SINE Alu -12 300 1 492 257 65 78 chr15 50604532 50604873 -35090881 - L1MC4a LINE L1 -377 5744 5539 323 285 106 0 chr15 50605226 50605349 -35090405 - MIR SINE MIR -55 207 72 228 189 0 0 chr15 50605618 50605655 -35090099 - MER69 DNA AcHobo 0 2526 2490 619 293 16 16 chr15 50605710 50605898 -35089856 - L2 LINE L2 -422 2892 2705 200 200 0 0 chr15 50606051 50606086 -35089668 + CT-rich Low_complexity Low_complexity 2 36 0 1679 121 88 7 chr15 50606401 50606674 -35089080 - AluSg SINE Alu -15 295 1 2270 114 0 0 chr15 50606678 50606984 -35088770 - AluSg SINE Alu -4 306 1 246 320 95 20 chr15 50607419 50607566 -35088188 + MIR SINE MIR 105 262 0 1908 157 0 0 chr15 50607716 50608003 -35087751 - AluSx SINE Alu -20 292 6 2117 99 0 33 chr15 50608991 50609295 -35086459 - AluSg SINE Alu -16 294 1 234 163 122 0 chr15 50610247 50610296 -35085458 + MIR3 SINE MIR 154 208 0 756 207 35 0 chr15 50612731 50612876 -35082878 + FRAM SINE Alu 2 151 -25 852 254 27 35 chr15 50612945 50613040 -35082714 + MIR SINE MIR 5 99 -163 2079 138 3 0 chr15 50613040 50613344 -35082410 - AluJb SINE Alu -7 305 1 852 254 27 35 chr15 50613344 50613508 -35082246 + MIR SINE MIR 99 262 0 298 272 7 140 chr15 50614180 50614316 -35081438 - MIR SINE MIR -110 152 35 311 249 157 55 chr15 50614357 50614574 -35081180 - L1ME4a LINE L1 -43 6078 5840 219 273 30 0 chr15 50614742 50614808 -35080946 - MIR SINE MIR -121 141 74 204 222 37 37 chr15 50614992 50615046 -35080708 - L2 LINE L2 -1 3271 3218 * 308 233 155 17 chr15 50615015 50615131 -35080623 - MIR SINE MIR -18 244 113 207 161 0 0 chr15 50615186 50615217 -35080537 + polypyrimidine Low_complexity Low_complexity 4 34 0 990 257 167 56 chr15 50615230 50615876 -35079878 - HAL1 LINE L1 -8 2499 1782 2203 271 78 36 chr15 50615878 50616843 -35078911 - HAL1 LINE L1 -1099 1408 404 304 279 16 39 chr15 50616848 50616977 -35078777 - HAL1 LINE L1 -2265 242 117 1793 196 99 34 chr15 50617529 50618054 -35077700 + MER34B LTR ERV1 4 562 -3 402 232 120 21 chr15 50619108 50619250 -35076504 + L1MEc LINE L1 49 204 -6192 1358 307 26 9 chr15 50619255 50619685 -35076069 + L1MEc LINE L1 234 670 -5726 1057 149 0 11 chr15 50619685 50619859 -35075895 - FRAM SINE Alu -3 173 2 334 292 60 52 chr15 50619878 50620111 -35075643 + L1M4 LINE L1 3364 3598 -2548 1204 203 37 0 chr15 50620189 50620431 -35075323 + MER110 LTR ERV1 239 489 -2 1013 212 26 56 chr15 50622710 50622941 -35072813 + MER58A DNA MER1_type 1 224 0 206 250 269 28 chr15 50624412 50624520 -35071234 - L3 LINE CR1 -127 1450 1317 2072 128 6 6 chr15 50624535 50624847 -35070907 + AluSq SINE Alu 1 312 -1 495 266 112 0 chr15 50625716 50625859 -35069895 + MIR3 SINE MIR 44 202 -6 25 31 0 0 chr15 50625930 50625962 -35069792 + AT_rich Low_complexity Low_complexity 1 32 0 2256 111 0 0 chr15 50626738 50627036 -35068718 + AluSx SINE Alu 1 298 -14 1080 160 74 4 chr15 50627042 50627273 -35068481 + L1MB2 LINE L1 5915 6161 -10 204 278 42 14 chr15 50627397 50627469 -35068285 - MIR SINE MIR -6 256 183 2283 95 0 7 chr15 50630392 50630696 -35065058 + AluY SINE Alu 1 302 -9 188 333 0 0 chr15 50631232 50631283 -35064471 - L2 LINE L2 -12 3301 3251 524 264 24 0 chr15 50631784 50631909 -35063845 + FLAM_A SINE Alu 1 128 -5 205 191 0 24 chr15 50631913 50631955 -35063799 + GA-rich Low_complexity Low_complexity 3 43 0 21 36 0 0 chr15 50632578 50632606 -35063148 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr15 50633116 50633141 -35062613 + AT_rich Low_complexity Low_complexity 1 25 0 2214 127 0 0 chr15 50634612 50634920 -35060834 + AluSx SINE Alu 3 310 -2 3245 236 80 18 chr15 50635620 50635744 -35060010 - L1MEc LINE L1 -2811 3729 3614 1933 105 84 7 chr15 50635744 50636029 -35059725 + AluSx SINE Alu 3 309 -3 3245 236 80 18 chr15 50636029 50636992 -35058762 - L1MEc LINE L1 -2926 3614 2575 2244 63 9 72 chr15 50636992 50637183 -35058571 - AluY SINE Alu 0 311 148 7762 18 0 0 chr15 50637183 50638561 -35057193 - L1PA3 LINE L1 0 6155 4778 2244 63 9 72 chr15 50638561 50638701 -35057053 - AluY SINE Alu -163 148 1 373 251 47 16 chr15 50638701 50638849 -35056905 - L1MEc LINE L1 -3954 2626 2436 5810 130 42 5 chr15 50638854 50639829 -35055925 - L1MC2 LINE L1 -13 6331 5328 514 211 58 39 chr15 50639826 50639982 -35055772 - L1MEc LINE L1 -4121 2419 2261 * 563 184 0 48 chr15 50640093 50640218 -35055536 + FLAM_A SINE Alu 1 119 -14 21 57 0 0 chr15 50640223 50640258 -35055496 + AT_rich Low_complexity Low_complexity 1 35 0 275 287 0 0 chr15 50640318 50640405 -35055349 - L1MC4 LINE L1 -1339 6703 6617 * 284 281 0 0 chr15 50640334 50640423 -35055331 + L1MC4 LINE L1 6614 6702 -1340 412 261 41 45 chr15 50640517 50640786 -35054968 - L1ME3A LINE L1 -181 6058 5747 905 270 38 10 chr15 50640788 50641112 -35054642 - L1ME3A LINE L1 -582 5649 5312 652 260 31 18 chr15 50641150 50641377 -35054377 - L1MB8 LINE L1 -3 6175 5946 2569 270 78 78 chr15 50642160 50642499 -35053255 - L1ME3A LINE L1 -4168 2228 1890 2211 92 10 0 chr15 50642499 50642793 -35052961 - AluSq SINE Alu -13 300 4 2569 270 78 78 chr15 50642793 50644624 -35051130 - L1ME3A LINE L1 -4505 1891 58 180 267 0 0 chr15 50644724 50644769 -35050985 + MIR SINE MIR 112 156 -106 2057 121 7 0 chr15 50647495 50647793 -35047961 + AluSg SINE Alu 1 300 -10 334 300 114 44 chr15 50648219 50648743 -35047011 + L1ME4a LINE L1 5270 5884 -237 647 319 59 54 chr15 50649114 50649406 -35046348 + L2 LINE L2 2903 3199 -114 1568 181 24 7 chr15 50649406 50649699 -35046055 + AluJb SINE Alu 2 299 -13 647 319 59 54 chr15 50649699 50649814 -35045940 + L2 LINE L2 3199 3312 -1 1932 95 0 4 chr15 50649839 50650102 -35045652 + AluSx SINE Alu 42 303 -9 236 297 31 0 chr15 50650185 50650249 -35045505 - L2 LINE L2 -6 3307 3242 1021 218 159 31 chr15 50650534 50650855 -35044899 + MLT1A1 LTR MaLR 4 365 0 1561 201 21 0 chr15 50650905 50651188 -35044566 + AluSx SINE Alu 1 289 -23 530 242 94 0 chr15 50652001 50652043 -35043711 - L1MA10 LINE L1 0 6334 6293 263 233 23 139 chr15 50652043 50652208 -35043546 - L1ME1 LINE L1 -44 6122 5986 2265 103 0 7 chr15 50652208 50652518 -35043236 - AluSx SINE Alu -4 308 1 263 233 23 139 chr15 50652518 50652567 -35043187 - L1ME1 LINE L1 -180 5986 5933 1422 186 62 27 chr15 50652572 50652910 -35042844 - L1MA7 LINE L1 -5 6286 5937 6843 199 44 29 chr15 50653069 50654460 -35041294 - L1M4c LINE L1 -1944 4904 3536 2143 102 0 3 chr15 50654460 50654780 -35040974 - AluY SINE Alu 0 319 1 6843 199 44 29 chr15 50654780 50654877 -35040877 - L1M4c LINE L1 -3312 3536 3442 2148 129 10 3 chr15 50654877 50655187 -35040567 + AluSx SINE Alu 1 312 0 6843 199 44 29 chr15 50655187 50655395 -35040359 - L1M4c LINE L1 -3406 3442 3180 249 196 0 0 chr15 50655395 50655446 -35040308 + (TA)n Simple_repeat Simple_repeat 2 52 0 271 292 0 0 chr15 50655449 50655538 -35040216 + L1MC4 LINE L1 6614 6702 -1340 225 276 23 0 chr15 50655559 50655646 -35040108 - L1MC4 LINE L1 -1339 6703 6615 * 233 283 0 22 chr15 50655569 50655661 -35040093 + L1MC4 LINE L1 6614 6703 -1339 366 269 15 35 chr15 50655677 50655893 -35039861 - L1M4c LINE L1 -4076 2772 2545 249 184 0 0 chr15 50656107 50656156 -35039598 - L1M4c LINE L1 -4172 2677 2629 902 260 52 28 chr15 50656160 50656487 -35039267 - L1M4c LINE L1 -5152 1697 1342 595 225 0 0 chr15 50656497 50656608 -35039146 + FLAM_A SINE Alu 1 111 -31 1503 208 8 0 chr15 50656641 50656905 -35038849 + AluJb SINE Alu 1 266 -46 1422 209 35 0 chr15 50657377 50657686 -35038068 - L1M LINE L1 -812 5334 5039 807 241 17 11 chr15 50657686 50657860 -35037894 + MER8 DNA MER2_type 1 175 -64 268 191 0 0 chr15 50657907 50657949 -35037805 + MER8 DNA MER2_type 182 223 -16 1299 207 11 0 chr15 50657951 50658221 -35037533 - L1 LINE L1 -1110 5622 5350 22 35 0 0 chr15 50658239 50658268 -35037486 + AT_rich Low_complexity Low_complexity 1 29 0 2561 14 0 3 chr15 50658392 50658677 -35037077 - AluYb8 SINE Alu -3 315 32 4617 179 20 43 chr15 50658679 50659108 -35036646 - L1 LINE L1 -1401 5331 4893 1533 194 3 50 chr15 50659108 50659428 -35036326 + AluJo SINE Alu 1 305 -7 4617 179 20 43 chr15 50659428 50660060 -35035694 - L1 LINE L1 -1839 4893 4295 970 161 24 0 chr15 50660063 50660231 -35035523 - L1P4 LINE L1 -444 5722 5551 923 198 10 5 chr15 50660228 50660430 -35035324 - L1 LINE L1 -2456 4276 4074 * 2255 265 53 40 chr15 50660458 50662036 -35033718 - L1 LINE L1 -3425 3307 1701 1343 192 51 0 chr15 50662041 50662296 -35033458 - L1 LINE L1 -5004 1649 1382 3077 277 43 17 chr15 50662302 50663063 -35032691 - L1 LINE L1 -5161 1492 712 930 174 0 11 chr15 50663115 50663293 -35032461 - L1ME2 LINE L1 -295 5869 5694 25 0 0 0 chr15 50663332 50663357 -35032397 + AT_rich Low_complexity Low_complexity 1 25 0 567 211 164 7 chr15 50663433 50663585 -35032169 + MER58B DNA MER1_type 115 290 -51 384 332 84 26 chr15 50664573 50664763 -35030991 + MIR SINE MIR 3 203 -59 1048 200 0 0 chr15 50664924 50665104 -35030650 - AluJb SINE Alu -4 308 129 279 79 0 0 chr15 50665104 50665142 -35030612 + (T)n Simple_repeat Simple_repeat 1 38 0 272 47 0 23 chr15 50666235 50666278 -35029476 + (CA)n Simple_repeat Simple_repeat 2 43 0 3091 146 3 28 chr15 50666396 50666963 -35028791 + L1MA6 LINE L1 5744 6296 -4 305 195 0 12 chr15 50667314 50667396 -35028358 + GA-rich Low_complexity Low_complexity 4 84 0 301 128 0 0 chr15 50667411 50667458 -35028296 + Tigger1 DNA MER2_type 1845 1891 -527 3274 127 22 0 chr15 50667498 50668001 -35027753 + Tigger1 DNA MER2_type 1881 2394 -24 25 83 0 0 chr15 50668655 50668715 -35027039 + AT_rich Low_complexity Low_complexity 1 60 0 2350 88 20 9 chr15 50669543 50669886 -35025868 - L1PA14 LINE L1 -10 6151 5805 266 233 60 30 chr15 50670142 50670275 -35025479 + L1 LINE L1 4180 4316 -1830 606 203 47 0 chr15 50670280 50670408 -35025346 + AluSq/x SINE Alu 1 134 -179 264 139 23 0 chr15 50670408 50670451 -35025303 + MIR SINE MIR 198 241 -21 1672 187 11 0 chr15 50670544 50670822 -35024932 + AluJb SINE Alu 1 281 -31 906 240 32 11 chr15 50670866 50671145 -35024609 + L1ME2 LINE L1 4408 4692 -1454 604 224 0 0 chr15 50671159 50671275 -35024479 + FRAM SINE Alu 54 169 -7 1992 136 4 0 chr15 50671485 50671792 -35023962 + AluSx SINE Alu 1 308 0 471 312 79 15 chr15 50671869 50672202 -35023552 + L1MEc LINE L1 1265 1594 -4790 616 254 78 93 chr15 50672203 50672652 -35023102 + L1ME2 LINE L1 5579 6020 -144 317 297 71 52 chr15 50672662 50672932 -35022822 - L1M4c LINE L1 -3884 2500 2256 23 0 0 0 chr15 50673435 50673458 -35022296 + AT_rich Low_complexity Low_complexity 1 23 0 653 275 52 36 chr15 50673861 50674166 -35021588 - L1ME1 LINE L1 -2 6160 5848 2136 237 86 24 chr15 50674167 50675317 -35020437 - L1ME1 LINE L1 -478 5688 4479 1107 240 145 54 chr15 50675378 50675840 -35019914 - MLT1F LTR MaLR -2 540 37 1900 259 97 39 chr15 50676025 50676922 -35018832 - L1ME1 LINE L1 -1950 4196 3240 967 171 83 0 chr15 50676922 50677115 -35018639 - MER3 DNA MER1_type 0 209 1 1900 259 97 39 chr15 50677115 50677162 -35018592 - L1ME1 LINE L1 -2906 3240 3197 1770 196 0 10 chr15 50677163 50677475 -35018279 + AluJo SINE Alu 1 309 -3 1063 134 6 0 chr15 50677475 50677632 -35018122 + AluSg/x SINE Alu 143 300 -10 868 249 72 14 chr15 50677643 50677992 -35017762 - L1ME1 LINE L1 -3019 3127 2759 584 198 192 18 chr15 50678353 50678520 -35017234 - MLT1F1 LTR MaLR -358 209 14 23 0 0 0 chr15 50678661 50678684 -35017070 + AT_rich Low_complexity Low_complexity 1 23 0 443 335 11 6 chr15 50678776 50678952 -35016802 - MER5B DNA MER1_type 0 178 2 243 0 0 0 chr15 50679450 50679477 -35016277 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1789 175 0 0 chr15 50679503 50679789 -35015965 - AluSx SINE Alu -26 286 1 2108 126 0 0 chr15 50679910 50680211 -35015543 - AluSx SINE Alu -11 301 1 312 106 0 0 chr15 50680646 50680693 -35015061 - MADE1 DNA Mariner -33 47 1 1894 159 30 88 chr15 50681123 50681379 -35014375 + L1M4 LINE L1 802 1071 -5471 2445 71 0 3 chr15 50681379 50681674 -35014080 + AluSc SINE Alu 1 294 -15 1827 171 13 7 chr15 50681679 50681989 -35013765 - AluJb SINE Alu 0 312 1 1894 159 30 88 chr15 50681989 50682228 -35013526 + L1M4 LINE L1 1075 1274 -5268 1391 112 0 0 chr15 50682338 50682517 -35013237 + AluSg/x SINE Alu 98 276 -36 230 0 33 0 chr15 50682517 50682547 -35013207 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr15 50683100 50683121 -35012633 + AT_rich Low_complexity Low_complexity 1 21 0 658 340 53 9 chr15 50683526 50683864 -35011890 + LTR16A LTR ERVL 76 428 -22 219 264 19 19 chr15 50683905 50683958 -35011796 + MIR SINE MIR 7 59 -203 27 29 0 0 chr15 50684126 50684160 -35011594 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr15 50684280 50684309 -35011445 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 50684458 50684480 -35011274 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 50685290 50685312 -35010442 + AT_rich Low_complexity Low_complexity 1 22 0 1342 258 82 12 chr15 50686511 50687011 -35008743 + L1ME2 LINE L1 5620 6154 -10 1637 182 15 60 chr15 50688104 50688506 -35007248 + MLT1B LTR MaLR 1 384 -6 1509 97 9 22 chr15 50688560 50688788 -35006966 + LTR9 LTR ERV1 1 225 -387 1185 165 16 0 chr15 50688890 50689084 -35006670 - MER21A-int LTR ERV1 -3994 197 1 4491 156 81 38 chr15 50689086 50689963 -35005791 - MER21A LTR ERV1 -3 928 14 34 0 0 0 chr15 50689963 50689997 -35005757 + AT_rich Low_complexity Low_complexity 1 34 0 2869 140 27 2 chr15 50690152 50690632 -35005122 + L1M4 LINE L1 1698 2189 -5376 2192 113 10 7 chr15 50690841 50691150 -35004604 + AluSx SINE Alu 1 310 -2 410 263 132 32 chr15 50691287 50691568 -35004186 - L1M4 LINE L1 -1319 4827 4519 30 0 0 0 chr15 50691931 50691961 -35003793 + AT_rich Low_complexity Low_complexity 1 30 0 1895 160 0 89 chr15 50692238 50692607 -35003147 + MER1B DNA MER1_type 2 337 0 1326 193 41 4 chr15 50692930 50693174 -35002580 + MER61B LTR ERV1 141 393 -32 604 121 0 0 chr15 50693182 50693265 -35002489 - AluSg/x SINE Alu -23 286 204 574 234 16 22 chr15 50693351 50693535 -35002219 + L1M4 LINE L1 4299 4481 -3084 1366 169 0 0 chr15 50693558 50693759 -35001995 + AluJb SINE Alu 21 221 -91 742 230 53 59 chr15 50694360 50694764 -35000990 + L1M4 LINE L1 4758 5152 -2413 587 261 0 0 chr15 50694798 50694917 -35000837 + FLAM_A SINE Alu 5 123 -10 1279 197 74 23 chr15 50694952 50695343 -35000411 + L1M4 LINE L1 5270 5680 -1885 1257 201 4 31 chr15 50695355 50695609 -35000145 + AluJo SINE Alu 1 247 -65 1416 140 0 14 chr15 50695710 50695787 -34999967 - AluSx SINE Alu -102 210 133 2272 92 0 23 chr15 50695787 50696093 -34999661 - AluSc SINE Alu -10 299 1 1416 140 0 14 chr15 50696093 50696222 -34999532 - AluSx SINE Alu -179 133 7 697 260 81 23 chr15 50696240 50696720 -34999034 + L1M4 LINE L1 4476 4983 -2582 2162 99 0 10 chr15 50696857 50697149 -34998605 + AluSp SINE Alu 17 305 -8 1789 167 3 6 chr15 50697208 50697520 -34998234 + AluJb SINE Alu 1 311 -1 348 289 100 11 chr15 50697560 50697750 -34998004 - L2 LINE L2 -1222 2092 1886 357 329 97 30 chr15 50697791 50698028 -34997726 + MIR SINE MIR 4 256 -6 242 333 67 0 chr15 50698540 50698569 -34997185 + L2 LINE L2 2186 2212 -1102 1608 166 28 21 chr15 50698569 50698859 -34996895 + AluJo SINE Alu 1 292 -20 242 333 67 0 chr15 50698859 50698934 -34996820 + L2 LINE L2 2212 2297 -1017 751 229 48 48 chr15 50698946 50699156 -34996598 + MIR SINE MIR 53 262 0 584 331 139 28 chr15 50699170 50699665 -34996089 + L2 LINE L2 2331 2880 -434 760 258 28 69 chr15 50699900 50700261 -34995493 + L1M4 LINE L1 968 1313 -6150 1696 151 0 60 chr15 50700282 50700603 -34995151 - AluJb SINE Alu 0 303 1 357 167 0 15 chr15 50700613 50700679 -34995075 - AluJ/FRAM SINE Alu -10 292 228 2134 221 53 39 chr15 50700762 50701482 -34994272 + L1M4 LINE L1 1377 2106 -5357 1968 142 0 26 chr15 50701482 50701793 -34993961 - AluJb SINE Alu -9 303 1 316 207 74 33 chr15 50701793 50701909 -34993845 + L1M4 LINE L1 4096 4216 -3349 486 188 65 19 chr15 50701913 50702067 -34993687 + L1M4 LINE L1 4094 4254 -3311 242 168 48 112 chr15 50702087 50702212 -34993542 + L1M4 LINE L1 17 133 -7432 543 228 109 10 chr15 50702225 50702418 -34993336 + MLT1J LTR MaLR 287 498 -13 249 175 32 0 chr15 50702505 50702568 -34993186 + (TA)n Simple_repeat Simple_repeat 1 65 0 34 24 0 0 chr15 50702994 50703035 -34992719 + AT_rich Low_complexity Low_complexity 1 41 0 231 143 54 0 chr15 50703063 50703119 -34992635 + L1M4 LINE L1 4269 4327 -3238 2090 140 7 0 chr15 50703119 50703411 -34992343 + AluSx SINE Alu 1 294 -18 523 129 30 10 chr15 50703666 50703767 -34991987 + MER61-int LTR ERV1 4999 5101 -116 220 259 0 19 chr15 50704056 50704110 -34991644 - MER5A DNA MER1_type -11 178 126 2186 89 4 0 chr15 50704111 50704431 -34991323 + AluY SINE Alu 1 321 0 195 313 0 0 chr15 50704487 50704535 -34991219 - MER5A DNA MER1_type -139 50 3 1004 180 0 0 chr15 50704837 50705004 -34990750 - AluJb SINE Alu 0 312 146 5622 159 56 83 chr15 50705004 50706321 -34989433 + MER52A LTR ERV1 2 1283 -472 261 98 0 0 chr15 50706422 50706463 -34989291 + MER21A-int LTR ERV1 3241 3281 -3477 1360 163 9 0 chr15 50706517 50706744 -34989010 + MER21A-int LTR ERV1 273 501 -3690 292 207 281 0 chr15 50706752 50706834 -34988920 - MER21A LTR ERV1 -218 713 609 2432 182 11 17 chr15 50706834 50707302 -34988452 + MER21A-int LTR ERV1 3536 4000 -2758 * 7237 150 16 40 chr15 50707293 50708712 -34987042 + MER21A-int LTR ERV1 2752 4136 -55 180 0 0 0 chr15 50708818 50708838 -34986916 + (TG)n Simple_repeat Simple_repeat 2 21 0 342 0 0 0 chr15 50708905 50708943 -34986811 + (TG)n Simple_repeat Simple_repeat 2 39 0 543 140 0 11 chr15 50708944 50709037 -34986717 + MER21A LTR ERV1 24 115 -816 1754 157 92 67 chr15 50709043 50709826 -34985928 + MER21A LTR ERV1 91 931 0 196 360 0 45 chr15 50709892 50709981 -34985773 + MIR SINE MIR 8 92 -170 273 211 0 0 chr15 50710686 50710743 -34985011 + MER58 DNA MER1_type 2359 2415 -5 2161 112 0 20 chr15 50710782 50711085 -34984669 + AluSx SINE Alu 1 297 -15 2428 110 35 8 chr15 50711107 50711479 -34984275 + L1PA15 LINE L1 5776 6157 -8 421 249 88 46 chr15 50711523 50711828 -34983926 + L1MEc LINE L1 2144 2461 -3935 2149 109 3 29 chr15 50712055 50712368 -34983386 + AluSg SINE Alu 1 305 -5 773 195 0 0 chr15 50712804 50712932 -34982822 + FLAM_A SINE Alu 1 128 -5 5391 118 37 26 chr15 50712949 50713610 -34982144 + L1PB1 LINE L1 4934 5586 -565 1805 157 0 0 chr15 50713610 50713878 -34981876 + AluSx SINE Alu 1 268 -44 5391 118 37 26 chr15 50713878 50714357 -34981397 + L1PB1 LINE L1 5586 6097 -54 2235 94 10 16 chr15 50714357 50714492 -34981262 + AluSx SINE Alu 1 135 -177 2241 108 10 0 chr15 50714492 50714787 -34980967 + AluSq SINE Alu 1 298 -15 2235 94 10 16 chr15 50714787 50714959 -34980795 + AluSx SINE Alu 135 306 -6 5391 118 37 26 chr15 50714959 50715014 -34980740 + L1PB1 LINE L1 6097 6150 -1 753 303 137 21 chr15 50715218 50715598 -34980156 + MLT1K LTR MaLR 154 577 -11 21 57 0 0 chr15 50716285 50716320 -34979434 + AT_rich Low_complexity Low_complexity 1 35 0 184 29 29 29 chr15 50718052 50718086 -34977668 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 6335 192 21 7 chr15 50718087 50719277 -34976477 + L1M1 LINE L1 172 1378 -6187 671 169 69 8 chr15 50719378 50719508 -34976246 + MER58B DNA MER1_type 203 340 -1 309 273 73 20 chr15 50719510 50719660 -34976094 - L1MEc LINE L1 -4628 1979 1822 299 255 85 28 chr15 50719671 50719777 -34975977 - L1MEc LINE L1 -5453 963 852 521 239 70 28 chr15 50719849 50720062 -34975692 - L1ME LINE L1 -4857 1569 1348 1373 132 10 5 chr15 50720062 50720266 -34975488 - AluSg/x SINE Alu -14 298 94 231 217 72 0 chr15 50720286 50720369 -34975385 - L1ME LINE L1 -5031 1397 1309 236 278 60 23 chr15 50720517 50720650 -34975104 - L1ME LINE L1 -5602 814 677 321 262 39 55 chr15 50720800 50720955 -34974799 - L1ME LINE L1 -5908 508 356 450 248 38 7 chr15 50722133 50722290 -34973464 + L1MA10 LINE L1 6004 6327 -7 192 158 0 0 chr15 50722762 50722800 -34972954 + A-rich Low_complexity Low_complexity 1 38 0 2161 100 0 0 chr15 50724729 50725049 -34970705 - AluSc SINE Alu 0 320 1 2257 87 3 13 chr15 50725060 50725358 -34970396 - AluY SINE Alu -16 295 1 710 233 89 53 chr15 50725767 50725985 -34969769 - L1ME2 LINE L1 -1 6163 5925 2421 84 0 3 chr15 50725985 50726284 -34969470 - AluSp SINE Alu -15 298 1 710 233 89 53 chr15 50726284 50726425 -34969329 - L1ME2 LINE L1 -239 5925 5791 461 144 168 69 chr15 50726571 50726680 -34969074 - L1M4 LINE L1 -3696 2450 2316 2058 146 0 0 chr15 50726680 50726975 -34968779 - AluSx SINE Alu -17 295 1 461 144 168 69 chr15 50726975 50727038 -34968716 - L1M4 LINE L1 -3830 2316 2261 384 22 0 0 chr15 50727064 50727109 -34968645 + (TG)n Simple_repeat Simple_repeat 1 45 0 260 301 68 0 chr15 50727109 50727212 -34968542 + L1ME2 LINE L1 5914 6023 -141 702 335 122 22 chr15 50727290 50727825 -34967929 + L2 LINE L2 2350 2937 -377 267 260 26 0 chr15 50727989 50728066 -34967688 + (TA)n Simple_repeat Simple_repeat 2 80 0 291 352 0 28 chr15 50728066 50728174 -34967580 + L2 LINE L2 3209 3313 0 2329 64 7 7 chr15 50729272 50729569 -34966185 + AluY SINE Alu 1 297 -14 1923 124 7 10 chr15 50730554 50730853 -34964901 - AluSx SINE Alu -14 298 1 26 0 0 0 chr15 50730874 50730900 -34964854 + AT_rich Low_complexity Low_complexity 1 26 0 280 246 82 27 chr15 50730907 50731017 -34964737 - HAL1 LINE L1 -32 2475 2360 475 302 9 20 chr15 50732136 50732310 -34963444 - MER5B DNA MER1_type -1 188 12 396 286 19 9 chr15 50732365 50732470 -34963284 - MER5A DNA MER1_type -80 109 4 326 288 150 20 chr15 50732921 50733074 -34962680 - L3 LINE CR1 -61 1516 1344 2303 77 0 16 chr15 50733138 50733448 -34962306 + AluY SINE Alu 1 305 -6 236 227 0 0 chr15 50733564 50733608 -34962146 + AluJ/monomer SINE Alu 1 44 -256 998 184 18 46 chr15 50733771 50734053 -34961701 - L1MB8 LINE L1 -1 6177 5904 1400 197 3 32 chr15 50734129 50734438 -34961316 + AluJo SINE Alu 3 302 -10 189 0 0 0 chr15 50734438 50734459 -34961295 + (TA)n Simple_repeat Simple_repeat 2 22 0 2159 96 0 24 chr15 50734465 50734758 -34960996 + AluSx SINE Alu 2 287 -25 189 94 0 0 chr15 50734758 50734790 -34960964 + (TA)n Simple_repeat Simple_repeat 2 33 0 213 265 12 36 chr15 50734797 50734880 -34960874 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 280 49 16 66 chr15 50734882 50734943 -34960811 + L1MCa LINE L1 2007 2064 -4362 207 0 0 0 chr15 50734944 50734967 -34960787 + (CA)n Simple_repeat Simple_repeat 2 24 0 216 0 0 0 chr15 50734968 50734992 -34960762 + (TA)n Simple_repeat Simple_repeat 2 25 0 1417 176 55 3 chr15 50734994 50735334 -34960420 - L1MB7 LINE L1 -300 5869 5496 775 198 35 0 chr15 50735347 50735519 -34960235 - L1M4 LINE L1 -6357 185 8 452 236 14 14 chr15 50736661 50736805 -34958949 + L1ME3A LINE L1 6027 6170 0 22 80 0 0 chr15 50738272 50738322 -34957432 + AT_rich Low_complexity Low_complexity 1 50 0 379 304 89 57 chr15 50738472 50738788 -34956966 + L1ME LINE L1 4946 5271 -875 2080 127 3 16 chr15 50738806 50739121 -34956633 + AluSq SINE Alu 1 311 -2 392 286 142 21 chr15 50739184 50739425 -34956329 + L1ME LINE L1 5352 5647 -474 2016 106 53 0 chr15 50739425 50739709 -34956045 + AluSx SINE Alu 1 299 -13 392 286 142 21 chr15 50739709 50739801 -34955953 + L1ME LINE L1 5647 5727 -394 2128 117 17 0 chr15 50740471 50740769 -34954985 - AluSp SINE Alu -10 303 1 248 227 0 40 chr15 50741199 50741274 -34954480 + L1MC3 LINE L1 7703 7774 -11 423 288 38 15 chr15 50741480 50741612 -34954142 + MIR SINE MIR 36 170 -92 246 303 0 0 chr15 50741765 50741831 -34953923 + MER2 DNA MER2_type 279 344 -1 524 322 70 36 chr15 50742157 50742545 -34953209 + L2 LINE L2 2260 2660 -654 613 244 83 10 chr15 50742545 50742750 -34953004 + MLT1E1 LTR MaLR 1 220 -434 333 215 108 11 chr15 50742748 50742841 -34952913 + MLT1E1 LTR MaLR 553 654 0 * 274 303 16 25 chr15 50742843 50742965 -34952789 + L2 LINE L2 2660 2780 -534 202 363 22 0 chr15 50742965 50743056 -34952698 + L2 LINE L2 3178 3270 -2 2096 100 10 3 chr15 50743057 50743347 -34952407 + AluSg SINE Alu 1 292 -18 4611 108 46 1 chr15 50743470 50744189 -34951565 + L1PA13 LINE L1 5405 6155 -8 203 133 0 0 chr15 50744284 50744314 -34951440 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 3237 52 0 2 chr15 50744314 50744719 -34951035 - L1PA3 LINE L1 0 6155 5752 23 0 0 0 chr15 50744919 50744942 -34950812 + AT_rich Low_complexity Low_complexity 1 23 0 703 283 119 8 chr15 50745046 50745297 -34950457 - L2 LINE L2 -1078 2236 1958 227 216 59 59 chr15 50745887 50745989 -34949765 - L1ME4a LINE L1 0 6121 6020 906 184 0 0 chr15 50746389 50746530 -34949224 - AluJb SINE Alu -24 288 148 657 322 56 5 chr15 50746549 50746907 -34948847 - L1ME4a LINE L1 -348 5822 5443 2081 130 3 0 chr15 50747010 50747311 -34948443 + AluSx SINE Alu 1 302 -10 1113 184 141 4 chr15 50747726 50747960 -34947794 + AluJo SINE Alu 1 266 -46 23 0 0 0 chr15 50747981 50748004 -34947750 + AT_rich Low_complexity Low_complexity 1 23 0 2419 93 3 0 chr15 50748199 50748510 -34947244 + AluSp SINE Alu 2 313 0 2515 51 0 26 chr15 50748625 50748938 -34946816 + AluY SINE Alu 1 305 -6 2320 93 3 0 chr15 50749486 50749788 -34945966 + AluSq SINE Alu 1 303 -10 203 273 130 52 chr15 50750298 50750375 -34945379 + L2 LINE L2 448 530 -2784 5223 165 28 20 chr15 50751147 50751291 -34944463 + L1MC3 LINE L1 5710 5851 -1934 1689 151 14 28 chr15 50751291 50751467 -34944287 - AluJo SINE Alu -15 297 125 180 0 0 0 chr15 50751467 50751487 -34944267 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1689 151 14 28 chr15 50751487 50751601 -34944153 - AluJo SINE Alu -187 125 11 5223 165 28 20 chr15 50751601 50752432 -34943322 + L1MC3 LINE L1 5851 6692 -1093 313 200 0 15 chr15 50753294 50753359 -34942395 - MIR SINE MIR 0 262 199 220 358 18 37 chr15 50753475 50753584 -34942170 + MER5A DNA MER1_type 55 161 -28 473 99 12 0 chr15 50753647 50753728 -34942026 + (TG)n Simple_repeat Simple_repeat 2 83 0 255 274 63 21 chr15 50753799 50753894 -34941860 + L2 LINE L2 1494 1592 -1722 291 268 98 9 chr15 50753897 50754009 -34941745 + L2 LINE L2 1891 2012 -1302 22 0 0 0 chr15 50754287 50754309 -34941445 + AT_rich Low_complexity Low_complexity 1 22 0 369 247 41 77 chr15 50754511 50754656 -34941098 + Charlie7 DNA MER1_type 398 538 -2074 1397 186 102 4 chr15 50754656 50754931 -34940823 + AluJb SINE Alu 4 305 -7 369 247 41 77 chr15 50754931 50754955 -34940799 + Charlie7 DNA MER1_type 538 561 -2051 23 108 0 0 chr15 50755031 50755124 -34940630 + AT_rich Low_complexity Low_complexity 1 93 0 28 61 0 0 chr15 50755662 50755711 -34940043 + AT_rich Low_complexity Low_complexity 1 49 0 305 297 0 33 chr15 50756042 50756133 -34939621 - L2 LINE L2 -4 3309 3222 280 192 48 10 chr15 50756179 50756225 -34939529 + (TA)n Simple_repeat Simple_repeat 1 44 -64 1729 182 0 10 chr15 50756225 50756522 -34939232 - AluJb SINE Alu -18 294 1 280 192 48 10 chr15 50756522 50756579 -34939175 + (TA)n Simple_repeat Simple_repeat 44 108 0 714 159 9 0 chr15 50756705 50756818 -34938936 + FLAM_A SINE Alu 15 128 -14 183 290 30 60 chr15 50757062 50757162 -34938592 + L2 LINE L2 3217 3313 0 198 284 0 75 chr15 50757214 50757281 -34938473 - L2 LINE L2 -2 3311 3250 2022 119 3 10 chr15 50757514 50757808 -34937946 - AluSq SINE Alu -21 292 1 329 246 123 71 chr15 50758273 50758521 -34937233 - LTR16C LTR ERVL 0 491 192 204 40 0 0 chr15 50758626 50758651 -34937103 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 1879 127 20 30 chr15 50758664 50758963 -34936791 - AluSx SINE Alu -16 296 1 2585 53 0 3 chr15 50759504 50759808 -34935946 - AluY SINE Alu -8 303 1 193 244 37 0 chr15 50759859 50759913 -34935841 - MIR3 SINE MIR -48 160 104 282 290 195 41 chr15 50759966 50760187 -34935567 - MIR SINE MIR -6 256 2 219 259 155 9 chr15 50760661 50760777 -34934977 - MIR SINE MIR -9 253 121 1686 195 26 0 chr15 50760831 50761133 -34934621 - AluJo SINE Alu -2 310 1 24 32 0 0 chr15 50761606 50761637 -34934117 + AT_rich Low_complexity Low_complexity 1 31 0 775 183 0 15 chr15 50761765 50761896 -34933858 + AluSq/x SINE Alu 1 129 -183 24 0 0 0 chr15 50761911 50761935 -34933819 + AT_rich Low_complexity Low_complexity 1 24 0 1919 141 20 17 chr15 50762006 50762305 -34933449 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr15 50762504 50762529 -34933225 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr15 50763402 50763423 -34932331 + AT_rich Low_complexity Low_complexity 1 21 0 2163 125 0 7 chr15 50763568 50763872 -34931882 - AluSx SINE Alu -10 302 1 1347 261 67 14 chr15 50765042 50765475 -34930279 + L1M4 LINE L1 -253 202 -6078 3937 238 62 55 chr15 50765579 50766060 -34929694 + L1M4 LINE L1 1350 1826 -4556 1717 152 45 4 chr15 50766060 50766329 -34929425 - AluJb SINE Alu -32 280 1 3937 238 62 55 chr15 50766329 50767126 -34928628 + L1M4 LINE L1 1826 2616 -3766 1852 146 39 0 chr15 50767126 50767406 -34928348 - AluSx SINE Alu -21 291 1 3937 238 62 55 chr15 50767406 50767754 -34928000 + L1M4 LINE L1 2616 2960 -3422 2301 89 20 0 chr15 50767754 50768057 -34927697 + AluY SINE Alu 1 309 -2 3937 238 62 55 chr15 50768057 50768811 -34926943 + L1M4 LINE L1 2960 3841 -2541 2150 128 3 0 chr15 50769672 50769976 -34925778 + AluSx SINE Alu 1 305 -7 267 79 0 0 chr15 50769976 50770014 -34925740 + (TA)n Simple_repeat Simple_repeat 1 38 0 2321 91 3 0 chr15 50770122 50770420 -34925334 + AluSp SINE Alu 1 299 -14 1903 174 36 0 chr15 50771014 50771347 -34924407 - MER7A DNA MER2_type -1 345 3 366 301 135 19 chr15 50771992 50772148 -34923606 - MIR SINE MIR -74 188 15 279 171 200 86 chr15 50772148 50772253 -34923501 - MER44D DNA MER2_type 0 705 589 192 97 0 0 chr15 50772257 50772288 -34923466 + (TA)n Simple_repeat Simple_repeat 1 31 0 1507 163 70 0 chr15 50772305 50772563 -34923191 - AluSx SINE Alu -19 293 18 605 29 29 78 chr15 50772577 50772636 -34923118 - MER44D DNA MER2_type -1974 613 560 1885 161 30 9 chr15 50772636 50772966 -34922788 + MER1B DNA MER1_type 1 337 0 605 29 29 78 chr15 50772966 50773009 -34922745 - MER44D DNA MER2_type -2027 560 516 1374 162 8 4 chr15 50773033 50773268 -34922486 + AluSg/x SINE Alu 74 309 -3 627 163 147 0 chr15 50773268 50773397 -34922357 - MER44D DNA MER2_type -184 425 8 409 165 24 12 chr15 50773413 50773498 -34922256 + L1MC1 LINE L1 6248 6333 0 2035 142 0 13 chr15 50773752 50774062 -34921692 - AluSx SINE Alu -6 306 1 22 0 0 0 chr15 50774472 50774494 -34921260 + AT_rich Low_complexity Low_complexity 1 22 0 203 0 0 36 chr15 50774692 50774720 -34921034 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1887 129 11 4 chr15 50774722 50775002 -34920752 - AluSx SINE Alu -30 282 1 21 57 0 0 chr15 50775087 50775122 -34920632 + AT_rich Low_complexity Low_complexity 1 35 0 1222 224 132 9 chr15 50775307 50775647 -34920107 + L1ME1 LINE L1 5778 6159 -7 878 227 6 6 chr15 50776011 50776183 -34919571 + MER5A DNA MER1_type 18 189 0 1983 254 22 45 chr15 50776799 50777380 -34918374 + L1ME1 LINE L1 5330 5891 -275 1494 206 0 10 chr15 50777380 50777671 -34918083 + AluJo SINE Alu 9 296 -16 1983 254 22 45 chr15 50777671 50777803 -34917951 + L1ME1 LINE L1 5891 6024 -142 520 225 13 7 chr15 50777892 50778043 -34917711 + L1ME1 LINE L1 1615 1766 -4630 518 213 98 0 chr15 50778145 50778328 -34917426 + L1ME1 LINE L1 4372 4572 -1643 * 2006 203 83 36 chr15 50778324 50778884 -34916870 + L1ME1 LINE L1 5658 6401 -2 1854 166 30 37 chr15 50778954 50779136 -34916618 - L1MA8 LINE L1 0 6291 6109 2198 97 13 0 chr15 50779136 50779434 -34916320 + AluSp SINE Alu 1 302 -11 1854 166 30 37 chr15 50779434 50779654 -34916100 - L1MA8 LINE L1 -182 6109 5892 336 157 0 0 chr15 50780129 50780180 -34915574 - MER66A LTR ERV1 -142 336 286 1101 143 28 0 chr15 50780194 50780278 -34915476 + U2 snRNA snRNA 1 81 -107 2337 87 3 10 chr15 50780278 50780577 -34915177 - AluSp SINE Alu -16 297 1 1101 143 28 0 chr15 50780577 50780674 -34915080 + U2 snRNA snRNA 81 187 -1 1374 135 34 0 chr15 50782787 50782995 -34912759 - AluJb SINE Alu -9 303 89 468 245 5 72 chr15 50783781 50783989 -34911765 - L1ME3A LINE L1 -168 6396 6203 428 211 181 8 chr15 50783989 50784122 -34911632 + MER58B DNA MER1_type 186 341 0 714 221 20 51 chr15 50784130 50784325 -34911429 - MER5A DNA MER1_type 0 189 1 242 200 0 0 chr15 50784325 50784375 -34911379 - L1ME3A LINE L1 -353 6203 6154 615 185 25 0 chr15 50784377 50784496 -34911258 - FLAM_C SINE Alu -9 134 13 817 316 83 2 chr15 50784500 50784896 -34910858 - L1ME3A LINE L1 -396 6160 5733 1822 175 0 10 chr15 50784915 50785229 -34910525 + AluJo SINE Alu 1 311 -1 2270 261 98 81 chr15 50785237 50786370 -34909384 - L1MEc LINE L1 -2052 4488 3376 2528 67 0 3 chr15 50786370 50786682 -34909072 - AluY SINE Alu 0 311 1 2270 261 98 81 chr15 50786682 50787798 -34907956 - L1MEc LINE L1 -3164 3376 2235 2294 95 0 19 chr15 50787829 50788145 -34907609 - AluSx SINE Alu -2 310 1 237 258 247 0 chr15 50788404 50788493 -34907261 + Tigger5 DNA MER2_type 28 138 -2185 * 1063 95 0 90 chr15 50788489 50788678 -34907076 + Tigger5 DNA MER2_type 2103 2274 -49 283 250 133 79 chr15 50788703 50789131 -34906623 - L1MEc LINE L1 -4785 1755 1305 2122 134 0 0 chr15 50789284 50789582 -34906172 - AluSx SINE Alu -14 298 1 220 294 156 28 chr15 50790232 50790341 -34905413 + L2 LINE L2 3150 3272 0 1307 128 15 20 chr15 50790516 50790720 -34905034 - MER2 DNA MER2_type -142 203 1 349 245 102 0 chr15 50790819 50790917 -34904837 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3890 111 72 51 chr15 50790918 50791642 -34904112 + Tigger3(Golem) DNA MER2_type 2288 3026 -3 22 0 0 0 chr15 50792352 50792374 -34903380 + AT_rich Low_complexity Low_complexity 1 22 0 186 333 0 0 chr15 50792678 50792732 -34903022 + MIR SINE MIR 15 68 -194 2088 109 11 0 chr15 50793267 50793552 -34902202 - AluSg SINE Alu -22 288 1 620 174 37 4 chr15 50793736 50793865 -34901889 + MER2 DNA MER2_type 1 142 -97 251 274 0 0 chr15 50793870 50793932 -34901822 + MER2 DNA MER2_type 284 345 0 2269 105 10 0 chr15 50844092 50844386 -34851368 - AluSx SINE Alu -15 297 1 2493 64 0 0 chr15 50844420 50844716 -34851038 - AluY SINE Alu -15 296 1 222 37 0 0 chr15 50845128 50845155 -34850599 + (T)n Simple_repeat Simple_repeat 1 27 0 2243 148 53 5 chr15 50845268 50845647 -34850107 + MER47B DNA MER2_type 20 416 -2 199 173 67 107 chr15 50845769 50845844 -34849910 + L2 LINE L2 3241 3312 -1 1469 180 0 48 chr15 50846458 50846753 -34849001 - AluJo SINE Alu -3 309 29 2373 86 10 0 chr15 50846757 50847060 -34848694 - AluSp SINE Alu -6 307 2 499 228 54 22 chr15 50847086 50847270 -34848484 + L1MC4a LINE L1 5693 5882 -1926 1163 294 100 58 chr15 50847517 50848334 -34847420 - L2 LINE L2 0 3313 2459 1109 155 32 43 chr15 50848328 50848539 -34847215 + AluJo SINE Alu 87 289 -23 * 295 247 39 0 chr15 50848539 50848616 -34847138 + GA-rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr15 50849028 50849049 -34846705 + AT_rich Low_complexity Low_complexity 1 21 0 249 163 0 0 chr15 50849691 50849734 -34846020 + Alu SINE Alu 3 45 -257 272 269 192 5 chr15 50849853 50849977 -34845777 + L1MC4a LINE L1 5950 6050 -1758 1608 163 0 87 chr15 50849977 50850309 -34845445 + AluJo SINE Alu 1 303 -9 272 269 192 5 chr15 50850309 50850377 -34845377 + L1MC4a LINE L1 6050 6178 -1630 996 201 0 0 chr15 50850380 50850549 -34845205 - AluJb SINE Alu -10 302 134 319 250 274 0 chr15 50850875 50851043 -34844711 + L1MC4a LINE L1 6499 6712 -1096 2110 124 0 0 chr15 50851046 50851328 -34844426 + AluSx SINE Alu 1 282 -30 35 0 0 0 chr15 50851336 50851371 -34844383 + AT_rich Low_complexity Low_complexity 1 35 0 336 240 50 109 chr15 50851371 50852542 -34843212 + L1MC4 LINE L1 6788 8026 -16 2329 117 0 0 chr15 50852542 50852842 -34842912 - AluSq SINE Alu -13 300 1 336 240 50 109 chr15 50852842 50852885 -34842869 + L1MC4 LINE L1 8026 7902 -140 2255 94 0 10 chr15 50852885 50853184 -34842570 + AluY SINE Alu 1 296 -15 336 240 50 109 chr15 50853184 50853293 -34842461 + L1MC4 LINE L1 7901 8015 -27 2675 208 95 52 chr15 50853943 50854711 -34841043 - L1MC5 LINE L1 -48 7913 7079 2375 81 0 10 chr15 50854711 50855008 -34840746 + AluSq SINE Alu 1 294 -19 2675 208 95 52 chr15 50855008 50855364 -34840390 - L1MC5 LINE L1 -882 7079 6740 2365 65 0 10 chr15 50855825 50856119 -34839635 - AluY SINE Alu -20 291 1 204 233 55 55 chr15 50856340 50856413 -34839341 + MIR SINE MIR 14 86 -176 1324 147 7 55 chr15 50856646 50856918 -34838836 - L1MD2 LINE L1 -2 6357 6099 2103 119 3 3 chr15 50857231 50857524 -34838230 + AluSx SINE Alu 1 293 -19 27 49 0 0 chr15 50857710 50857751 -34838003 + AT_rich Low_complexity Low_complexity 1 41 0 328 146 0 0 chr15 50857945 50858010 -34837744 + Alu SINE Alu 241 298 -4 433 351 67 35 chr15 50858018 50858334 -34837420 + L1ME LINE L1 5491 5816 -305 565 297 191 41 chr15 50858650 50859675 -34836079 - L2 LINE L2 0 3272 2087 816 148 127 0 chr15 50859675 50859817 -34835937 + FRAM SINE Alu 1 159 -17 406 316 136 59 chr15 50859887 50860093 -34835661 - L2 LINE L2 -1397 1917 1728 1777 129 3 58 chr15 50860093 50860388 -34835366 + AluSx SINE Alu 1 279 -33 406 316 136 59 chr15 50860388 50860420 -34835334 - L2 LINE L2 -1586 1728 1700 2102 120 0 0 chr15 50860420 50860737 -34835017 + AluSx SINE Alu 1 317 0 406 316 136 59 chr15 50860737 50861091 -34834663 - L2 LINE L2 -1614 1700 1277 2016 130 0 0 chr15 50861369 50861653 -34834101 + AluSx SINE Alu 2 285 -27 2328 72 0 23 chr15 50861858 50862164 -34833590 - AluY SINE Alu -12 299 1 1413 116 0 0 chr15 50862366 50862555 -34833199 + AluY SINE Alu 114 302 -9 1593 109 80 33 chr15 50862751 50863053 -34832701 - Tigger2a DNA MER2_type -118 316 1 188 212 15 0 chr15 50865703 50865769 -34829985 + (TA)n Simple_repeat Simple_repeat 1 67 0 2390 77 0 7 chr15 50866484 50866784 -34828970 + AluSx SINE Alu 1 298 -14 1259 49 0 0 chr15 50867304 50867448 -34828306 - AluY SINE Alu -167 144 1 2513 170 33 14 chr15 50867448 50867930 -34827824 + L1PA16 LINE L1 5676 6166 0 383 133 0 100 chr15 50867930 50868020 -34827734 + L1P5 LINE L1 5679 5759 -397 243 118 0 0 chr15 50868873 50868907 -34826847 + MIR SINE MIR 78 111 -151 632 177 0 24 chr15 50868945 50869069 -34826685 - MER58B DNA MER1_type -2 339 219 2435 105 0 3 chr15 50869970 50870283 -34825471 - AluSq SINE Alu -1 312 1 288 246 119 19 chr15 50870345 50870659 -34825095 + L1MC2 LINE L1 1006 1339 -5077 902 144 0 0 chr15 50870660 50870785 -34824969 + FLAM_C SINE Alu 1 125 -18 25 0 0 0 chr15 50870785 50870810 -34824944 + AT_rich Low_complexity Low_complexity 1 25 0 314 258 0 0 chr15 50870810 50870903 -34824851 + L1MC2 LINE L1 1811 1903 -4523 * 3756 196 38 53 chr15 50870901 50871039 -34824715 + L1MC2 LINE L1 4348 4487 -1939 2291 110 0 3 chr15 50871039 50871339 -34824415 + AluSx SINE Alu 1 299 -13 3756 196 38 53 chr15 50871339 50872427 -34823327 + L1MC2 LINE L1 4487 5556 -870 1478 153 0 0 chr15 50872428 50872643 -34823111 + AluSx SINE Alu 2 216 -96 721 100 0 0 chr15 50872676 50872776 -34822978 + AluSx SINE Alu 212 311 -1 207 0 0 0 chr15 50872776 50872799 -34822955 + (TA)n Simple_repeat Simple_repeat 2 24 0 4499 170 32 59 chr15 50872822 50873239 -34822515 + L1MC2 LINE L1 5553 5980 -644 1629 171 46 4 chr15 50873239 50873520 -34822234 + AluJb SINE Alu 11 303 -9 4499 170 32 59 chr15 50873520 50873552 -34822202 + L1MC2 LINE L1 5980 6011 -613 626 252 0 0 chr15 50873552 50873679 -34822075 + FLAM_A SINE Alu 3 129 -4 4499 170 32 59 chr15 50873679 50874318 -34821436 + L1MC2 LINE L1 6011 6613 -11 43 35 0 0 chr15 50874318 50874375 -34821379 + AT_rich Low_complexity Low_complexity 1 57 0 21 57 0 0 chr15 50874418 50874453 -34821301 + AT_rich Low_complexity Low_complexity 1 35 0 2145 116 3 13 chr15 50875154 50875456 -34820298 + AluSq SINE Alu 1 299 -14 948 208 132 0 chr15 50875584 50875781 -34819973 - MER58A DNA MER1_type -1 223 1 2515 72 3 0 chr15 50875807 50876111 -34819643 - AluSp SINE Alu -7 306 2 226 309 0 0 chr15 50876222 50876277 -34819477 + MER5A DNA MER1_type 36 90 -99 980 154 0 7 chr15 50876304 50876453 -34819301 + FRAM SINE Alu 1 146 -30 204 211 39 0 chr15 50876463 50876515 -34819239 + MER5B DNA MER1_type 125 178 0 534 297 40 7 chr15 50876516 50876664 -34819090 - MIR3 SINE MIR -46 162 10 644 294 50 18 chr15 50877186 50877404 -34818350 - MIR SINE MIR -6 256 32 246 226 38 0 chr15 50877699 50877752 -34818002 - L2 LINE L2 -1 3271 3217 657 121 0 0 chr15 50877900 50877999 -34817755 - AluSg/x SINE Alu -7 303 205 2268 91 3 0 chr15 50878138 50878436 -34817318 + AluSx SINE Alu 1 299 -13 250 266 181 11 chr15 50879014 50879108 -34816646 + L2 LINE L2 3158 3267 -5 1589 130 19 22 chr15 50879182 50879452 -34816302 - AluSx SINE Alu 0 312 44 1824 181 3 0 chr15 50879547 50879846 -34815908 + AluJo SINE Alu 1 300 -12 2431 94 0 0 chr15 50880302 50880611 -34815143 - AluSx SINE Alu -3 309 1 344 373 0 0 chr15 50880718 50880820 -34814934 - MIR SINE MIR -64 144 43 346 279 41 14 chr15 50882556 50882667 -34813087 - MIR SINE MIR -102 106 19 2512 69 0 0 chr15 50882941 50883244 -34812510 + AluY SINE Alu 1 303 -8 393 183 0 14 chr15 50883529 50883600 -34812154 - Tigger2 DNA MER2_type 0 2718 2649 883 105 196 0 chr15 50883600 50883743 -34812011 - AluSg/x SINE Alu -12 300 130 5542 133 11 10 chr15 50883845 50884339 -34811415 + L1MA3 LINE L1 4850 5342 -963 5542 107 13 13 chr15 50884339 50885206 -34810548 + L1MA3 LINE L1 5434 6303 -2 5542 133 11 10 chr15 50885206 50885229 -34810525 + L1MA3 LINE L1 5342 6303 -2 519 187 101 13 chr15 50885232 50885389 -34810365 + L1ME2 LINE L1 5988 6160 -2 1370 233 129 44 chr15 50885449 50885972 -34809782 + L1ME3 LINE L1 4487 5111 -1035 2336 86 3 0 chr15 50885972 50886274 -34809480 + AluSp SINE Alu 1 303 -10 1370 233 129 44 chr15 50886274 50886594 -34809160 + L1ME3 LINE L1 5111 5402 -744 2313 104 3 0 chr15 50886945 50887253 -34808501 + AluSc SINE Alu 1 309 0 754 245 23 27 chr15 50887253 50887514 -34808240 + L1ME3 LINE L1 5881 6140 -22 728 137 0 8 chr15 50887516 50887633 -34808121 + AluSp/q SINE Alu 188 303 -10 365 194 46 29 chr15 50887753 50887928 -34807826 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 1658 103 119 4 chr15 50888040 50888319 -34807435 - AluSg SINE Alu 0 308 1 22 0 0 0 chr15 50888322 50888344 -34807410 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 50889012 50889044 -34806710 + AT_rich Low_complexity Low_complexity 1 32 0 274 255 201 13 chr15 50889046 50889195 -34806559 - MIR SINE MIR -14 248 72 1478 166 84 40 chr15 50889219 50889515 -34806239 - AluJb SINE Alu -3 309 1 747 257 30 15 chr15 50889610 50889812 -34805942 - MIR SINE MIR -51 211 7 37 0 0 0 chr15 50890162 50890199 -34805555 + AT_rich Low_complexity Low_complexity 1 37 0 2061 119 0 35 chr15 50890579 50890890 -34804864 + AluSx SINE Alu 6 305 -7 2054 115 3 39 chr15 50890898 50891210 -34804544 + AluSx SINE Alu 1 301 -11 751 153 8 0 chr15 50891323 50891441 -34804313 + AluSg/x SINE Alu 176 294 -16 2368 158 24 18 chr15 50891441 50892197 -34803557 + L1P5 LINE L1 4790 5549 -607 1968 133 0 47 chr15 50892197 50892519 -34803235 + AluSx SINE Alu 1 307 -5 2368 158 24 18 chr15 50892519 50892660 -34803094 + L1P5 LINE L1 5549 5688 -468 252 305 14 92 chr15 50892788 50892929 -34802825 - MIR3 SINE MIR -65 143 14 27 0 0 0 chr15 50893078 50893105 -34802649 + AT_rich Low_complexity Low_complexity 1 27 0 515 244 50 0 chr15 50893644 50893804 -34801950 + L1ME3A LINE L1 5993 6160 -10 721 181 9 0 chr15 50893818 50893934 -34801820 + FLAM_C SINE Alu 1 117 -16 431 362 61 25 chr15 50894099 50894482 -34801272 - L2 LINE L2 -182 3090 2703 288 299 51 142 chr15 50895091 50895640 -34800114 - L2 LINE L2 -588 2726 2228 380 302 222 46 chr15 50896111 50896571 -34799183 + L2 LINE L2 2213 2753 -561 383 220 92 73 chr15 50896800 50897018 -34798736 + L1MC4a LINE L1 5791 6014 -107 236 238 0 16 chr15 50898807 50898870 -34796884 + (CCG)n Simple_repeat Simple_repeat 2 63 0 27 49 0 0 chr15 50898945 50898986 -34796768 + GC_rich Low_complexity Low_complexity 1 41 0 537 202 89 42 chr15 50900108 50900276 -34795478 + MER5B DNA MER1_type 2 177 -1 2410 57 0 24 chr15 50900335 50900633 -34795121 + AluY SINE Alu 1 291 -20 181 285 46 62 chr15 50901258 50901388 -34794366 - L2 LINE L2 -427 2887 2760 1625 186 115 2 chr15 50901402 50901838 -34793916 - Charlie4a DNA MER1_type -1 507 23 1769 137 39 14 chr15 50902315 50902599 -34793155 + AluJb SINE Alu 1 291 -21 299 160 0 0 chr15 50903885 50903935 -34791819 - L2 LINE L2 0 3313 3264 2325 101 3 0 chr15 50904410 50904708 -34791046 - AluSp SINE Alu -14 299 1 21 0 0 0 chr15 50905107 50905128 -34790626 + AT_rich Low_complexity Low_complexity 1 21 0 207 267 74 30 chr15 50905436 50905571 -34790183 + L3 LINE CR1 1232 1372 -205 323 269 50 131 chr15 50905630 50905790 -34789964 - HAL1b LINE L1 -14 1334 1188 626 303 117 48 chr15 50905804 50906348 -34789406 - L1ME4a LINE L1 -254 5867 5284 1958 150 4 0 chr15 50906664 50906979 -34788775 - AluSx SINE Alu 0 312 13 805 138 99 13 chr15 50907044 50907196 -34788558 - MER3 DNA MER1_type 0 209 45 2104 86 0 8 chr15 50907300 50907567 -34788187 - AluSq SINE Alu -48 265 1 2421 66 0 13 chr15 50907573 50907875 -34787879 - AluY SINE Alu -13 298 1 2133 133 0 0 chr15 50908718 50909037 -34786717 - AluSx SINE Alu 0 312 1 394 288 75 15 chr15 50909250 50909421 -34786333 - MIR3 SINE MIR -7 201 20 2385 87 3 3 chr15 50909688 50909988 -34785766 + AluSp SINE Alu 1 300 -13 2312 87 10 29 chr15 50910276 50910588 -34785166 + AluSx SINE Alu 1 306 -6 30 89 0 0 chr15 50911839 50911918 -34783836 + GC_rich Low_complexity Low_complexity 1 79 0 22 56 0 0 chr15 50914174 50914210 -34781544 + AT_rich Low_complexity Low_complexity 1 36 0 188 339 108 0 chr15 50918578 50918643 -34777111 + MIR SINE MIR 21 92 -170 257 152 225 0 chr15 50918735 50918817 -34776937 - MIR SINE MIR -17 191 84 1609 165 52 42 chr15 50919161 50919470 -34776284 - AluJb SINE Alu 0 312 1 225 65 0 0 chr15 50919676 50919707 -34776047 + (T)n Simple_repeat Simple_repeat 1 31 0 207 293 53 40 chr15 50922267 50922342 -34773412 - MER5A DNA MER1_type -50 139 64 417 190 13 13 chr15 50922845 50922924 -34772830 + MIR SINE MIR 72 150 -112 2002 102 0 8 chr15 50922937 50923201 -34772553 + AluSx SINE Alu 36 297 -15 567 43 0 0 chr15 50923214 50923284 -34772470 + (TA)n Simple_repeat Simple_repeat 2 71 0 2485 63 0 7 chr15 50924883 50925184 -34770570 - AluY SINE Alu -12 299 1 1732 192 31 0 chr15 50925353 50925645 -34770109 + AluJb SINE Alu 1 301 -11 197 62 0 31 chr15 50925980 50926012 -34769742 + (AATAG)n Simple_repeat Simple_repeat 5 35 0 2156 124 0 16 chr15 50926012 50926319 -34769435 + AluSc SINE Alu 1 302 -7 265 283 132 0 chr15 50926342 50926448 -34769306 + MIR SINE MIR 142 261 -1 16340 177 57 26 chr15 50926933 50931432 -34764322 - L1PA12 LINE L1 -3 6820 2463 2273 116 0 7 chr15 50931432 50931742 -34764012 + AluSc SINE Alu 1 308 -1 16340 177 57 26 chr15 50931742 50933070 -34762684 - L1PA12 LINE L1 -4360 2463 661 2371 89 10 13 chr15 50933070 50933384 -34762370 - AluSp SINE Alu 0 313 1 16340 177 57 26 chr15 50933384 50934067 -34761687 - L1PA12 LINE L1 -6162 661 1 1705 227 37 11 chr15 50934170 50934549 -34761205 + MLT1B LTR MaLR 2 390 0 1943 156 10 7 chr15 50935478 50935780 -34759974 - AluJb SINE Alu -8 304 2 1666 198 3 7 chr15 50935816 50936119 -34759635 + AluJb SINE Alu 1 302 -10 261 278 98 46 chr15 50937004 50937198 -34758556 + MIR SINE MIR 23 226 -36 1716 174 3 13 chr15 50937200 50937297 -34758457 + AluJo SINE Alu 2 98 -214 200 59 29 0 chr15 50937297 50937331 -34758423 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1716 174 3 13 chr15 50937331 50937531 -34758223 + AluJo SINE Alu 98 296 -16 184 30 61 0 chr15 50937689 50937722 -34758032 + T-rich Low_complexity Low_complexity 4 38 0 233 315 0 56 chr15 50937855 50937944 -34757810 + MIR SINE MIR 65 148 -114 2485 71 0 10 chr15 50938026 50938334 -34757420 - AluY SINE Alu -5 306 2 315 75 19 38 chr15 50938698 50938751 -34757003 - MER58B DNA MER1_type 0 341 290 813 138 31 69 chr15 50938752 50938932 -34756822 + FRAM SINE Alu 1 171 0 1078 162 103 8 chr15 50938932 50939166 -34756588 - MER58B DNA MER1_type -44 297 42 297 0 0 0 chr15 50939232 50939265 -34756489 + (CA)n Simple_repeat Simple_repeat 2 34 0 554 297 41 100 chr15 50939369 50939567 -34756187 + L1MEd LINE L1 708 916 -5203 1666 167 0 29 chr15 50939567 50939843 -34755911 + AluJb SINE Alu 1 268 -44 554 297 41 100 chr15 50939843 50939926 -34755828 + L1MEd LINE L1 916 962 -5157 2175 125 0 25 chr15 50939926 50940245 -34755509 + AluSx SINE Alu 1 311 -1 554 297 41 100 chr15 50940245 50940352 -34755402 + L1MEd LINE L1 962 1074 -5045 929 188 28 0 chr15 50940370 50940546 -34755208 + AluJo SINE Alu 120 300 -12 233 119 24 0 chr15 50940551 50940593 -34755161 + GA-rich Low_complexity Low_complexity 3 45 0 14827 129 21 24 chr15 50940636 50940825 -34754929 + Tigger1 DNA MER2_type 2 190 -2228 1596 209 0 13 chr15 50940825 50941136 -34754618 - AluJo SINE Alu -5 307 1 14827 129 21 24 chr15 50941136 50942119 -34753635 + Tigger1 DNA MER2_type 190 1174 -1244 1945 161 7 13 chr15 50942119 50942255 -34753499 + AluSx SINE Alu 1 136 -176 1798 114 31 8 chr15 50942255 50942510 -34753244 + AluSx SINE Alu 50 310 -2 1945 161 7 13 chr15 50942510 50942677 -34753077 + AluSx SINE Alu 136 302 -10 14827 129 21 24 chr15 50942677 50943926 -34751828 + Tigger1 DNA MER2_type 1174 2418 0 2071 90 0 8 chr15 50943988 50944254 -34751500 + AluSc SINE Alu 40 303 -6 321 167 26 26 chr15 50944369 50944447 -34751307 + MLT1G1 LTR MaLR 11 88 -507 301 250 145 40 chr15 50944510 50944634 -34751120 + MLT1F LTR MaLR 149 285 -282 * 426 190 140 35 chr15 50944615 50944749 -34751005 + MLT1F LTR MaLR 415 542 0 397 238 171 4 chr15 50944752 50945004 -34750750 + L1M4 LINE L1 2841 3134 -3012 661 184 0 0 chr15 50945017 50945120 -34750634 + FLAM_A SINE Alu 6 108 -34 252 0 0 0 chr15 50945134 50945162 -34750592 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 491 249 88 39 chr15 50945184 50945335 -34750419 + L1M4 LINE L1 3118 3260 -2886 1548 184 16 48 chr15 50945335 50945479 -34750275 + AluJb SINE Alu 1 148 -164 1632 163 64 14 chr15 50945479 50945774 -34749980 + AluSg SINE Alu 1 310 0 1548 184 16 48 chr15 50945774 50945938 -34749816 + AluJb SINE Alu 148 299 -13 2243 113 3 25 chr15 50945942 50946260 -34749494 + AluSx SINE Alu 1 311 -1 491 249 88 39 chr15 50946260 50946284 -34749470 + L1M4 LINE L1 3262 3307 -2839 736 126 18 0 chr15 50946313 50946424 -34749330 + AluJo SINE Alu 25 137 -175 1168 158 5 0 chr15 50946425 50946609 -34749145 + AluSx SINE Alu 4 188 -124 2473 143 95 12 chr15 50946643 50947147 -34748607 + SVA Other Other 323 868 -518 7105 67 8 48 chr15 50947411 50948835 -34746919 + SVA Other Other 433 1386 0 359 23 0 0 chr15 50948855 50948898 -34746856 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 786 276 62 0 chr15 50949001 50949276 -34746478 + L1M4 LINE L1 3969 4260 -1886 1777 148 43 7 chr15 50949408 50949686 -34746068 - AluJo SINE Alu -24 288 1 594 263 175 5 chr15 50949735 50949952 -34745802 - MIR SINE MIR -6 256 3 2364 241 76 68 chr15 50950802 50950858 -34744896 + L2 LINE L2 1957 2011 -1302 2519 74 0 10 chr15 50950858 50951170 -34744584 + AluY SINE Alu 1 309 -2 2364 241 76 68 chr15 50951170 50951391 -34744363 + L2 LINE L2 2011 2229 -1084 2245 103 0 0 chr15 50951391 50951733 -34744021 - AluSc SINE Alu 0 342 1 2364 241 76 68 chr15 50951733 50951745 -34744009 + L2 LINE L2 2229 2239 -1074 2293 107 0 7 chr15 50951745 50952044 -34743710 - AluSc SINE Alu -12 297 1 2364 241 76 68 chr15 50952044 50952750 -34743004 + L2 LINE L2 2239 2938 -375 1809 136 88 4 chr15 50952750 50953022 -34742732 - AluSx SINE Alu -17 295 1 2364 241 76 68 chr15 50953022 50953183 -34742571 + L2 LINE L2 2938 3096 -217 2235 103 3 0 chr15 50953183 50953528 -34742226 - AluSx SINE Alu 0 346 1 2364 241 76 68 chr15 50953528 50953703 -34742051 + L2 LINE L2 3096 3313 0 2053 129 0 0 chr15 50953723 50954001 -34741753 + AluSx SINE Alu 23 300 -12 2131 88 3 31 chr15 50954004 50954127 -34741627 + AluSx SINE Alu 18 143 -169 2024 107 64 0 chr15 50954127 50954407 -34741347 + AluSg SINE Alu 1 298 -12 2131 88 3 31 chr15 50954407 50954577 -34741177 + AluSx SINE Alu 143 303 -9 777 219 143 0 chr15 50954615 50954811 -34740943 - MER58A DNA MER1_type 0 224 1 887 212 12 0 chr15 50955341 50955506 -34740248 + MER20 DNA MER1_type 53 219 0 204 261 0 43 chr15 50956042 50956111 -34739643 + MIR SINE MIR 184 249 -13 1522 108 36 0 chr15 50958279 50958530 -34737224 - L1MB2 LINE L1 -7 6164 5905 638 126 79 39 chr15 50958530 50958657 -34737097 - FLAM_C SINE Alu -1 132 1 587 208 13 6 chr15 50958718 50958877 -34736877 - L1MB2 LINE L1 -278 5905 5746 188 86 29 0 chr15 50958897 50958932 -34736822 + (TA)n Simple_repeat Simple_repeat 1 36 0 549 171 0 34 chr15 50958935 50959052 -34736702 - L1M3 LINE L1 -384 5787 5675 616 142 0 71 chr15 50959053 50959166 -34736588 + AluJb SINE Alu 198 302 -10 1648 138 33 128 chr15 50959170 50959563 -34736191 - L1M3 LINE L1 -506 5677 5327 2107 130 7 7 chr15 50959563 50959718 -34736036 - AluSx SINE Alu -19 293 136 2573 57 0 3 chr15 50959718 50960015 -34735739 - AluSg SINE Alu -14 296 1 2107 130 7 7 chr15 50960015 50960152 -34735602 - AluSx SINE Alu -175 137 1 1648 138 33 128 chr15 50960152 50960186 -34735568 - L1M3 LINE L1 -856 5327 5291 754 315 87 26 chr15 50960190 50960650 -34735104 + L2 LINE L2 2826 3313 0 21 0 0 0 chr15 50961089 50961110 -34734644 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 50962963 50962983 -34732771 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2041 141 10 0 chr15 50965672 50965970 -34729784 - AluJb SINE Alu -11 301 1 2092 142 0 3 chr15 50966122 50966425 -34729329 + AluSx SINE Alu 1 302 -10 1874 131 16 75 chr15 50967000 50967121 -34728633 + MER47A DNA MER2_type 2 129 -2194 2279 95 0 0 chr15 50967121 50967406 -34728348 - AluSq SINE Alu 0 313 29 1874 131 16 75 chr15 50967406 50967672 -34728082 + MER47A DNA MER2_type 129 366 0 194 213 0 138 chr15 50972230 50972310 -34723444 - MIR3 SINE MIR -23 185 117 330 281 112 22 chr15 50972817 50972995 -34722759 - L1MB2 LINE L1 -561 5560 5367 2203 114 13 7 chr15 50973083 50973391 -34722363 - AluSg SINE Alu 0 310 1 1837 157 14 14 chr15 50973391 50973684 -34722070 - AluJb SINE Alu -19 293 1 2144 115 0 45 chr15 50973684 50973996 -34721758 - AluSx SINE Alu -14 298 1 193 297 78 86 chr15 50974584 50974816 -34720938 + L2 LINE L2 3018 3247 -25 2293 116 0 16 chr15 50974912 50975223 -34720531 + AluSq SINE Alu 1 306 -7 219 219 0 0 chr15 50975693 50975734 -34720020 + (TCCCG)n Simple_repeat Simple_repeat 2 42 0 349 262 120 99 chr15 50976663 50977106 -34718648 + L2 LINE L2 2820 3271 -1 292 256 0 128 chr15 50978091 50978120 -34717634 + MER5B DNA MER1_type 17 48 -130 1824 166 26 19 chr15 50978120 50978427 -34717327 - AluJo SINE Alu -3 309 1 292 256 0 128 chr15 50978427 50978514 -34717240 + MER5B DNA MER1_type 48 118 -60 962 235 235 36 chr15 50978522 50978995 -34716759 - L1ME2 LINE L1 0 6164 5598 2206 128 0 0 chr15 50978995 50979293 -34716461 - AluSx SINE Alu -14 298 1 2524 65 3 0 chr15 50979830 50980139 -34715615 - AluY SINE Alu -1 310 1 319 319 17 0 chr15 50981955 50982074 -34713680 + MIR SINE MIR 20 140 -68 528 305 55 50 chr15 50982199 50982592 -34713162 - L2 LINE L2 -179 3093 2700 310 275 12 69 chr15 50982594 50982754 -34713000 + L1MC5 LINE L1 7763 7913 -48 774 314 108 22 chr15 50982758 50983211 -34712543 - L2 LINE L2 -672 2642 2151 1607 174 67 12 chr15 50983217 50983348 -34712406 + L1M4 LINE L1 4862 4984 -1162 2459 92 7 0 chr15 50983348 50983651 -34712103 + AluSx SINE Alu 1 305 -7 1607 174 67 12 chr15 50983651 50983922 -34711832 + L1M4 LINE L1 4984 5286 -860 1472 110 37 0 chr15 50983920 50984166 -34711588 + L1MB2 LINE L1 5854 6108 -63 * 1867 152 0 4 chr15 50984167 50984436 -34711318 - AluJo SINE Alu -42 270 3 2092 104 7 0 chr15 50984501 50984780 -34710974 + AluY SINE Alu 1 281 -30 234 0 0 0 chr15 50984787 50984813 -34710941 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1000 98 0 0 chr15 50984815 50984938 -34710816 + AluSq/x SINE Alu 3 125 -187 333 314 80 6 chr15 50984968 50985143 -34710611 - L2 LINE L2 -1267 2047 1860 376 265 13 31 chr15 50986001 50986151 -34709603 + L1M4 LINE L1 4085 4239 -1907 2381 115 0 0 chr15 50986455 50986759 -34708995 - AluSx SINE Alu -8 304 1 563 297 86 35 chr15 50986852 50987291 -34708463 + L1M4 LINE L1 4680 5178 -968 347 252 10 0 chr15 50987299 50987402 -34708352 + L1M4 LINE L1 5245 5348 -798 972 111 15 0 chr15 50987619 50987783 -34707971 + AluSg/x SINE Alu 146 311 0 2040 110 50 7 chr15 50987890 50988171 -34707583 + AluSx SINE Alu 1 293 -19 34 42 0 0 chr15 50988465 50988513 -34707241 + AT_rich Low_complexity Low_complexity 1 48 0 1585 203 48 7 chr15 50989312 50989603 -34706151 + AluJb SINE Alu 1 303 -9 610 141 28 165 chr15 50990899 50991072 -34704682 - L1MA7 LINE L1 -2 6289 6094 2402 93 3 6 chr15 50991072 50991383 -34704371 - AluSq SINE Alu -1 312 3 1597 158 22 44 chr15 50991387 50991659 -34704095 - AluJo SINE Alu -18 294 29 610 141 28 165 chr15 50991659 50991735 -34704019 - L1MA7 LINE L1 -200 6091 6070 945 108 102 60 chr15 50995971 50996137 -34699617 - AluJo SINE Alu -4 308 136 1915 154 30 7 chr15 50997540 50997845 -34697909 + AluSx SINE Alu 1 312 0 2531 59 0 46 chr15 50997871 50998195 -34697559 - AluY SINE Alu -2 309 1 781 127 0 30 chr15 50998307 50998441 -34697313 - AluJo SINE Alu -172 130 1 325 320 158 34 chr15 50998565 50998964 -34696790 - L1ME3A LINE L1 -247 5923 5474 2217 101 0 10 chr15 50999205 50999531 -34696223 + AluY SINE Alu 1 311 0 2400 77 13 10 chr15 51000422 51000733 -34695021 + AluSq SINE Alu 1 312 -1 764 11 0 0 chr15 51001336 51001424 -34694330 - AluY SINE Alu -11 300 213 183 308 154 17 chr15 51002255 51002372 -34693382 - MIR SINE MIR -77 185 53 240 163 0 0 chr15 51002871 51002914 -34692840 + A-rich Low_complexity Low_complexity 1 43 0 27 87 0 0 chr15 51003248 51003317 -34692437 + GC_rich Low_complexity Low_complexity 1 69 0 223 333 6 30 chr15 51003375 51003543 -34692211 + G-rich Low_complexity Low_complexity 2 165 0 25 0 0 0 chr15 51003984 51004009 -34691745 + GC_rich Low_complexity Low_complexity 1 25 0 1929 128 14 0 chr15 51005669 51005965 -34689789 + AluSx SINE Alu 3 302 -10 2113 58 7 4 chr15 51006129 51006457 -34689297 + AluSc SINE Alu 1 329 0 2050 84 7 3 chr15 51006554 51006839 -34688915 + AluSc SINE Alu 13 298 -11 279 0 0 0 chr15 51007049 51007080 -34688674 + (CA)n Simple_repeat Simple_repeat 2 32 0 3857 150 59 125 chr15 51007083 51008054 -34687700 + MER21A LTR ERV1 25 931 0 1493 196 119 0 chr15 51008716 51009043 -34686711 + MER47A DNA MER2_type 1 366 0 523 254 96 79 chr15 51009173 51009629 -34686125 - MER52A LTR ERV1 -20 1735 689 4227 202 114 1 chr15 51009979 51011015 -34684739 + L1 LINE L1 3896 5048 -1098 334 252 9 18 chr15 51011016 51011127 -34684627 + L1ME LINE L1 5148 5257 -889 3118 244 28 30 chr15 51011235 51012524 -34683230 + L1 LINE L1 3937 5325 -821 2311 77 3 0 chr15 51012891 51013191 -34682563 + AluY SINE Alu 1 301 -10 229 196 18 36 chr15 51013547 51013603 -34682151 - Charlie8 DNA MER1_type -1001 1416 1362 1085 156 0 11 chr15 51013632 51013811 -34681943 + AluJb SINE Alu 1 177 -135 497 272 49 0 chr15 51013953 51014115 -34681639 + L1ME LINE L1 5548 5717 -404 21 0 0 0 chr15 51014151 51014172 -34681582 + AT_rich Low_complexity Low_complexity 1 21 0 256 122 0 49 chr15 51014172 51014213 -34681541 + AluSg/x SINE Alu 129 167 -133 559 58 0 0 chr15 51014213 51014282 -34681472 - MER41A LTR ERV1 0 554 486 227 176 0 20 chr15 51014386 51014437 -34681317 + (CGGGG)n Simple_repeat Simple_repeat 5 54 0 22 0 0 0 chr15 51014637 51014659 -34681095 + GC_rich Low_complexity Low_complexity 1 22 0 222 235 0 0 chr15 51014828 51014879 -34680875 + (CA)n Simple_repeat Simple_repeat 1 51 0 1144 224 34 4 chr15 51015262 51015525 -34680229 - Zaphod DNA AcHobo 0 4031 3761 5021 89 40 11 chr15 51015841 51016573 -34679181 - L1PA13 LINE L1 -5 6158 5406 198 0 0 0 chr15 51016590 51016612 -34679142 + (TCTCCC)n Simple_repeat Simple_repeat 3 24 0 5575 62 20 75 chr15 51016626 51017543 -34678211 + SVA Other Other 1 866 -520 1000 90 0 0 chr15 51017709 51017843 -34677911 - AluSq/x SINE Alu -178 134 1 1205 113 22 11 chr15 51017880 51018065 -34677689 - AluSq SINE Alu -126 187 1 730 184 0 0 chr15 51018070 51018195 -34677559 - FLAM_C SINE Alu -8 125 1 2726 183 81 28 chr15 51018203 51018783 -34676971 - L1MDa LINE L1 -3549 2991 2443 752 197 0 8 chr15 51018783 51018938 -34676816 - FLAM_A SINE Alu 0 133 2 2726 183 81 28 chr15 51018938 51019477 -34676277 - L1MDa LINE L1 -4097 2443 1813 594 206 75 101 chr15 51019656 51019714 -34676040 - MIR SINE MIR -2 260 202 2164 118 3 3 chr15 51019714 51020027 -34675727 - AluSq SINE Alu 0 313 1 594 206 75 101 chr15 51020027 51020167 -34675587 - MIR SINE MIR -60 202 67 270 296 196 50 chr15 51020194 51020327 -34675427 - MIR SINE MIR -32 230 118 1328 179 69 28 chr15 51020327 51020618 -34675136 - AluJo SINE Alu -9 303 1 270 296 196 50 chr15 51020618 51020683 -34675071 - MIR SINE MIR -144 118 3 915 83 0 51 chr15 51021495 51021651 -34674103 - L1MA3 LINE L1 0 6305 6158 1925 124 0 3 chr15 51023032 51023322 -34672432 + AluSx SINE Alu 1 289 -23 1163 104 4 26 chr15 51023424 51023654 -34672100 + SVA Other Other 596 820 -566 6097 59 40 49 chr15 51023670 51024633 -34671121 + SVA Other Other 433 1386 0 1662 179 12 0 chr15 51024662 51024981 -34670773 + L1P LINE L1 5064 5386 -760 302 277 60 0 chr15 51025007 51025090 -34670664 + L2 LINE L2 3175 3262 -10 1267 192 49 68 chr15 51026125 51026433 -34669321 - AluJb SINE Alu 0 302 1 346 245 82 99 chr15 51027039 51027272 -34668482 + L1M4 LINE L1 5175 5403 -743 1116 182 0 5 chr15 51027676 51027879 -34667875 + AluJb SINE Alu 24 225 -87 194 282 58 29 chr15 51028340 51028443 -34667311 - L3 LINE CR1 -800 777 672 629 329 106 42 chr15 51030161 51030699 -34665055 - L2 LINE L2 -5 3267 2717 1774 107 7 37 chr15 51032249 51032521 -34663233 - THE1B LTR MaLR 0 364 101 2116 95 0 10 chr15 51032524 51032828 -34662926 + AluY SINE Alu 3 303 -8 806 162 0 15 chr15 51032928 51033064 -34662690 - AluSq/x SINE Alu -178 134 1 2010 118 31 0 chr15 51033102 51033391 -34662363 - AluSx SINE Alu -14 298 1 335 192 27 0 chr15 51033404 51033477 -34662277 + Zaphod DNA AcHobo 3434 3508 -523 1122 147 0 50 chr15 51033537 51033755 -34661999 + AluJb SINE Alu 1 207 -105 435 248 163 23 chr15 51034320 51034449 -34661305 + L2 LINE L2 3126 3272 0 611 309 91 27 chr15 51035135 51035433 -34660321 - L2 LINE L2 0 3272 2956 493 238 107 80 chr15 51035852 51035940 -34659814 - L1ME4a LINE L1 -107 6014 5930 1740 129 6 72 chr15 51035940 51036272 -34659482 + AluSx SINE Alu 3 312 0 493 238 107 80 chr15 51036272 51036772 -34658982 - L1ME4a LINE L1 -191 5930 5410 1689 114 0 16 chr15 51036788 51037033 -34658721 - AluJo SINE Alu -9 303 63 2235 77 0 32 chr15 51037057 51037368 -34658386 - AluY SINE Alu -10 301 1 357 378 107 3 chr15 51037410 51037709 -34658045 - L1ME4a LINE L1 -913 5233 4904 374 324 150 63 chr15 51038023 51038281 -34657473 + L2 LINE L2 334 568 -2746 2024 127 0 7 chr15 51038281 51038580 -34657174 - AluSx SINE Alu -15 297 1 374 324 150 63 chr15 51038580 51038762 -34656992 + L2 LINE L2 568 812 -2502 2169 107 3 0 chr15 51038908 51039208 -34656546 - AluSp SINE Alu -8 305 5 602 332 109 62 chr15 51039211 51040070 -34655684 + L2 LINE L2 2351 3256 -16 461 248 113 14 chr15 51040342 51040483 -34655271 + MIR SINE MIR 56 210 -52 219 88 0 0 chr15 51041248 51041282 -34654472 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 663 102 153 0 chr15 51041282 51041380 -34654374 - THE1B LTR MaLR -251 113 1 654 271 8 21 chr15 51041381 51041548 -34654206 + MIR3 SINE MIR 11 169 -39 2205 110 0 0 chr15 51042031 51042331 -34653423 - AluSg SINE Alu -10 300 1 2115 108 3 10 chr15 51042635 51042941 -34652813 - AluSp SINE Alu -9 304 1 492 193 7 90 chr15 51042958 51043061 -34652693 - L1M4 LINE L1 -887 5259 5170 1745 150 17 3 chr15 51043061 51043354 -34652400 - AluJo SINE Alu -15 297 1 492 193 7 90 chr15 51043354 51043395 -34652359 - L1M4 LINE L1 -976 5170 5127 501 261 96 34 chr15 51043407 51043669 -34652085 - L1M4 LINE L1 -2528 3618 3374 1608 153 38 7 chr15 51043669 51043957 -34651797 - AluSx SINE Alu -15 297 1 501 261 96 34 chr15 51043957 51044193 -34651561 - L1M4 LINE L1 -2772 3374 3089 954 84 0 0 chr15 51044224 51044355 -34651399 - AluSg/x SINE Alu -8 302 172 1029 180 59 14 chr15 51048198 51048387 -34647367 + L1MA8 LINE L1 6060 6262 -29 2319 71 3 0 chr15 51048387 51048681 -34647073 - AluSp SINE Alu -18 295 1 1029 180 59 14 chr15 51048681 51048713 -34647041 + L1MA8 LINE L1 6262 6291 0 901 164 24 0 chr15 51048998 51049163 -34646591 + AluJb SINE Alu 136 304 -8 21 36 0 0 chr15 51049163 51049191 -34646563 + AT_rich Low_complexity Low_complexity 1 28 0 336 327 100 23 chr15 51050597 51050817 -34644937 + MIR SINE MIR 1 237 -25 1689 233 24 88 chr15 51050834 51051218 -34644536 + MLT2B3 LTR ERVL 1 337 -217 1994 124 0 16 chr15 51051218 51051525 -34644229 - AluSx SINE Alu -10 302 1 1689 233 24 88 chr15 51051525 51051723 -34644031 + MLT2B3 LTR ERVL 337 546 -8 470 306 38 48 chr15 51051726 51051752 -34644002 - MIR SINE MIR -51 211 186 1436 347 0 46 chr15 51051752 51052078 -34643676 - AluY SINE Alu 0 311 1 470 306 38 48 chr15 51052078 51052237 -34643517 - MIR SINE MIR -76 186 28 945 166 6 24 chr15 51052855 51053024 -34642730 - FRAM SINE Alu 0 166 1 361 259 185 12 chr15 51053116 51053278 -34642476 - L1MC/D LINE L1 -2001 5807 5618 222 311 55 71 chr15 51053611 51053794 -34641960 + L2 LINE L2 3031 3210 -62 358 345 89 25 chr15 51054284 51054487 -34641267 + MIR SINE MIR 1 216 -46 241 406 56 12 chr15 51054827 51054987 -34640767 - L2 LINE L2 -1 3271 3105 2059 119 0 7 chr15 51055751 51056045 -34639709 - AluSx SINE Alu -20 292 1 2118 128 3 67 chr15 51056369 51056729 -34639025 + MER1B DNA MER1_type 1 337 0 2242 103 0 0 chr15 51057393 51057694 -34638060 - AluSx SINE Alu -11 301 1 249 196 0 0 chr15 51057738 51057789 -34637965 + (TA)n Simple_repeat Simple_repeat 1 51 0 1796 178 3 0 chr15 51058328 51058626 -34637128 - AluSx SINE Alu -13 299 1 208 281 31 0 chr15 51058969 51059033 -34636721 - MIR SINE MIR -62 200 135 1738 118 0 0 chr15 51059812 51060057 -34635697 - AluSx SINE Alu -7 305 61 465 232 0 0 chr15 51060113 51060195 -34635559 + L2 LINE L2 3232 3313 0 180 313 0 31 chr15 51060248 51060312 -34635442 - MIR SINE MIR -100 108 47 534 101 22 0 chr15 51060402 51060491 -34635263 - AluSg/x SINE Alu -2 308 218 1079 169 0 21 chr15 51060492 51060681 -34635073 - AluJo SINE Alu -43 269 85 2144 109 0 10 chr15 51061512 51061814 -34633940 + AluSx SINE Alu 1 299 -13 1527 160 28 7 chr15 51062330 51062618 -34633136 + AluJb SINE Alu 1 294 -18 747 312 130 69 chr15 51064835 51065835 -34629919 + L2 LINE L2 1725 2785 -529 2052 125 7 3 chr15 51066031 51066334 -34629420 + AluSx SINE Alu 1 304 -8 754 154 19 111 chr15 51069984 51070059 -34625695 + MER5A DNA MER1_type 43 97 -92 1928 141 3 0 chr15 51070059 51070371 -34625383 + AluSq SINE Alu 1 313 0 754 154 19 111 chr15 51070371 51070457 -34625297 + MER5A DNA MER1_type 97 189 0 357 266 55 106 chr15 51070641 51070859 -34624895 + L1MC5 LINE L1 7725 7931 -30 248 300 0 0 chr15 51070942 51071002 -34624752 + L2 LINE L2 2878 2937 -376 716 230 195 45 chr15 51071021 51071334 -34624420 + L2 LINE L2 2911 3270 -43 225 338 14 0 chr15 51071980 51072051 -34623703 - MIR3 SINE MIR -50 158 87 33 97 0 0 chr15 51072950 51073053 -34622701 + GC_rich Low_complexity Low_complexity 1 103 0 448 335 50 38 chr15 51073566 51073751 -34622003 + MIR SINE MIR 9 199 -63 350 238 0 0 chr15 51073751 51073831 -34621923 - MER116 DNA Mariner 0 80 1 448 335 50 38 chr15 51073831 51073884 -34621870 + MIR SINE MIR 199 250 -12 208 358 164 13 chr15 51074525 51074757 -34620997 + L2 LINE L2 935 1201 -2113 653 131 0 0 chr15 51075190 51075289 -34620465 - AluJo SINE Alu -1 311 213 812 185 25 13 chr15 51075294 51075451 -34620303 - AluJo SINE Alu -153 159 1 765 170 0 34 chr15 51075664 51075811 -34619943 + FRAM SINE Alu 27 168 -8 723 363 67 4 chr15 51075860 51076337 -34619417 + L2 LINE L2 1487 1993 -1321 182 280 56 35 chr15 51076548 51076691 -34619063 + L2 LINE L2 1966 2111 -1203 259 346 95 56 chr15 51076878 51077268 -34618486 + LTR67 LTR ERVL 113 517 -40 294 254 8 87 chr15 51077274 51077318 -34618436 + L2 LINE L2 2214 2260 -1054 2358 76 7 0 chr15 51077318 51077620 -34618134 - AluSc SINE Alu -5 304 1 294 254 8 87 chr15 51077620 51077701 -34618053 + L2 LINE L2 2260 2329 -985 687 142 0 9 chr15 51078052 51078158 -34617596 - FLAM_C SINE Alu -24 119 15 445 289 40 0 chr15 51078200 51078349 -34617405 + L2 LINE L2 2596 2750 -564 681 124 10 0 chr15 51078349 51078446 -34617308 + AluS SINE Alu 2 99 -213 2138 95 3 3 chr15 51078737 51079033 -34616721 - AluSp SINE Alu -17 296 1 1063 264 163 25 chr15 51079098 51079504 -34616250 + MLT1K LTR MaLR 127 588 0 2334 70 0 22 chr15 51079822 51080135 -34615619 - AluSx SINE Alu -6 306 1 993 214 139 29 chr15 51081161 51081470 -34614284 - L1MDa LINE L1 -4724 1816 1474 855 48 16 16 chr15 51081470 51081596 -34614158 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 2822 215 93 45 chr15 51081733 51081905 -34613849 - L1MDa LINE L1 -5054 1486 1324 1984 137 3 0 chr15 51081905 51082197 -34613557 + AluSx SINE Alu 1 293 -19 2822 215 93 45 chr15 51082197 51082828 -34612926 - L1MDa LINE L1 -5216 1324 644 537 212 9 35 chr15 51082850 51082963 -34612791 + MER5B DNA MER1_type 69 178 0 412 349 125 14 chr15 51082963 51083244 -34612510 - L1MEd LINE L1 -4652 1732 1421 271 304 0 20 chr15 51083247 51083349 -34612405 - L1MEd LINE L1 -4867 1505 1406 522 241 18 0 chr15 51083463 51083575 -34612179 + LTR16A LTR ERVL 144 257 -193 * 946 141 13 0 chr15 51083573 51083722 -34612032 - LTR55 LTR ERV -397 151 1 2003 126 3 3 chr15 51083870 51084172 -34611582 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr15 51084328 51084352 -34611402 + AT_rich Low_complexity Low_complexity 1 24 0 426 148 0 0 chr15 51084363 51084424 -34611330 + AluS SINE Alu 6 66 -247 2046 120 3 0 chr15 51084766 51085058 -34610696 - AluSq SINE Alu -20 293 1 1915 103 57 0 chr15 51085122 51085403 -34610351 - AluSx SINE Alu -15 297 1 225 0 0 0 chr15 51085527 51085552 -34610202 + (TC)n Simple_repeat Simple_repeat 2 26 0 705 169 19 101 chr15 51085709 51085878 -34609876 + L1M4 LINE L1 3131 3312 -2834 1558 150 23 4 chr15 51085878 51086175 -34609579 + AluJb SINE Alu 14 315 0 705 169 19 101 chr15 51086175 51086229 -34609525 + L1M4 LINE L1 3312 3332 -2814 1923 106 10 35 chr15 51086229 51086365 -34609389 + AluSq SINE Alu 1 139 -174 2220 57 0 7 chr15 51086365 51086676 -34609078 + AluY SINE Alu 1 309 0 1923 106 10 35 chr15 51086676 51086849 -34608905 + AluSq SINE Alu 139 303 -10 705 169 19 101 chr15 51086849 51086890 -34608864 + L1M4 LINE L1 3332 3375 -2771 1016 173 0 16 chr15 51086890 51087075 -34608679 - AluJo SINE Alu -45 267 86 627 259 36 9 chr15 51087079 51087299 -34608455 - L1MEc LINE L1 -3009 3417 3192 480 141 0 0 chr15 51087302 51087373 -34608381 - AluJo SINE Alu -14 298 228 1811 178 107 43 chr15 51087373 51087894 -34607860 - MLT2A2 LTR ERVL -1 553 1 850 132 18 90 chr15 51087894 51088061 -34607693 - AluJo SINE Alu -79 233 79 226 163 0 0 chr15 51088064 51088107 -34607647 - L1MEc LINE L1 -3242 3184 3142 997 110 0 0 chr15 51088108 51088253 -34607501 + AluSg/x SINE Alu 168 312 0 1613 252 153 46 chr15 51088253 51088700 -34607054 - L1MEc LINE L1 -3268 3158 2760 1881 133 47 10 chr15 51088700 51089001 -34606753 - AluJb SINE Alu 0 312 1 1613 252 153 46 chr15 51089001 51089065 -34606689 - L1MEc LINE L1 -3666 2760 2704 677 134 118 25 chr15 51089065 51089184 -34606570 - FLAM_C SINE Alu -3 130 1 1613 252 153 46 chr15 51089184 51089298 -34606456 - L1MEc LINE L1 -3722 2704 2604 1513 151 19 39 chr15 51089298 51089609 -34606145 - AluJb SINE Alu -7 305 1 1613 252 153 46 chr15 51089609 51089753 -34606001 - L1MEc LINE L1 -3822 2604 2477 1687 170 0 17 chr15 51089753 51090042 -34605712 - AluJb SINE Alu -24 288 5 1613 252 153 46 chr15 51090042 51090121 -34605633 - L1MEc LINE L1 -3949 2477 2230 1185 154 116 38 chr15 51090128 51090395 -34605359 - AluJo SINE Alu 0 312 25 2322 173 213 34 chr15 51090396 51090411 -34605343 - L1MEc LINE L1 -4315 2111 2100 2048 121 30 0 chr15 51090411 51090708 -34605046 - AluSg SINE Alu -4 306 1 2322 173 213 34 chr15 51090708 51091392 -34604362 - L1MEc LINE L1 -4326 2100 1287 357 362 0 9 chr15 51091996 51092112 -34603642 + L1MC4 LINE L1 6589 6703 -1339 332 245 38 28 chr15 51092079 51092147 -34603607 - L1MCa LINE L1 -4362 2064 1998 * 2057 91 25 0 chr15 51092147 51092432 -34603322 - AluY SINE Alu -19 292 1 2225 97 3 0 chr15 51092436 51092735 -34603019 - AluSx SINE Alu -12 300 1 332 245 38 28 chr15 51092735 51092767 -34602987 - L1MCa LINE L1 -4430 1996 1958 347 289 18 0 chr15 51093050 51093164 -34602590 - L1M4 LINE L1 -1294 4852 4737 619 192 20 41 chr15 51093165 51093311 -34602443 - FRAM SINE Alu -13 163 21 1943 133 7 0 chr15 51094428 51094714 -34601040 + AluSx SINE Alu 1 288 -24 225 207 23 33 chr15 51094964 51095223 -34600531 + AluJo SINE Alu 6 309 -11 240 164 82 33 chr15 51095650 51095711 -34600043 + MLT1K LTR MaLR 211 274 -314 * 851 194 82 20 chr15 51095710 51095906 -34599848 + MLT1K LTR MaLR 381 588 0 985 193 74 10 chr15 51095978 51096180 -34599574 - MER58C DNA MER1_type 0 215 1 180 304 0 0 chr15 51096361 51096407 -34599347 + MIR SINE MIR 217 262 0 220 26 26 26 chr15 51098148 51098186 -34597568 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 249 288 113 45 chr15 51099013 51099190 -34596564 + L2 LINE L2 2721 2909 -405 2014 133 0 7 chr15 51100043 51100345 -34595409 - AluSx SINE Alu -12 300 1 22 70 0 0 chr15 51101523 51101566 -34594188 + GC_rich Low_complexity Low_complexity 1 43 0 1838 159 13 29 chr15 51103165 51103480 -34592274 - AluJb SINE Alu 0 312 3 33 0 0 0 chr15 51103619 51103652 -34592102 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 51103758 51103786 -34591968 + AT_rich Low_complexity Low_complexity 1 28 0 286 291 135 36 chr15 51103854 51104200 -34591554 + L1M4 LINE L1 3764 4187 -1959 2153 121 3 13 chr15 51104200 51104498 -34591256 - AluSx SINE Alu -17 295 1 286 291 135 36 chr15 51104498 51104707 -34591047 + L1M4 LINE L1 4187 4374 -1772 226 271 0 0 chr15 51104722 51104770 -34590984 + MIR SINE MIR 186 233 -29 229 288 14 0 chr15 51104813 51104886 -34590868 - L1ME LINE L1 -472 5649 5576 2304 137 0 0 chr15 51104886 51105199 -34590555 - AluSq SINE Alu 0 313 1 2055 132 3 7 chr15 51107786 51108075 -34587679 + AluSx SINE Alu 1 288 -24 2155 110 3 7 chr15 51108738 51109037 -34586717 - AluSx SINE Alu -14 298 1 4230 167 24 80 chr15 51109607 51109744 -34586010 + L1MB2 LINE L1 4251 4394 -1777 2250 123 0 0 chr15 51109744 51110046 -34585708 + AluSx SINE Alu 7 308 -4 4230 167 24 80 chr15 51110046 51110094 -34585660 + L1MB2 LINE L1 4394 4443 -1728 2192 116 6 6 chr15 51110094 51110405 -34585349 + AluSx SINE Alu 1 311 -1 4230 167 24 80 chr15 51110405 51110489 -34585265 + L1MB2 LINE L1 4443 4530 -1641 2424 77 10 7 chr15 51110489 51110787 -34584967 + AluSg SINE Alu 1 299 -11 4230 167 24 80 chr15 51110787 51112042 -34583712 + L1MB2 LINE L1 4530 5651 -520 2271 144 14 39 chr15 51112042 51112458 -34583296 - L1MA7 LINE L1 0 6291 5886 4230 167 24 80 chr15 51112458 51112931 -34582823 + L1MB2 LINE L1 5651 6149 -22 762 173 8 8 chr15 51113970 51114097 -34581657 + FRAM SINE Alu 1 127 -49 411 184 7 78 chr15 51114365 51114506 -34581248 - AluSp SINE Alu -180 133 3 23 0 0 0 chr15 51114508 51114531 -34581223 + AT_rich Low_complexity Low_complexity 1 23 0 375 261 91 25 chr15 51114615 51114856 -34580898 - L1M4 LINE L1 -1498 4648 4392 455 316 168 55 chr15 51115046 51115462 -34580292 - L2 LINE L2 -641 2673 2305 658 62 10 10 chr15 51115462 51115559 -34580195 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 455 316 168 55 chr15 51115559 51115636 -34580118 - L2 LINE L2 -1009 2305 2238 1985 140 3 32 chr15 51115636 51115950 -34579804 + AluSx SINE Alu 6 310 -2 455 316 168 55 chr15 51115950 51116284 -34579470 - L2 LINE L2 -1076 2238 1752 574 228 55 14 chr15 51116511 51116656 -34579098 + MIR SINE MIR 78 228 -34 2461 99 3 0 chr15 51116656 51116968 -34578786 + AluSq SINE Alu 1 313 0 1789 194 0 3 chr15 51117670 51117969 -34577785 - AluJb SINE Alu -14 298 1 297 0 0 0 chr15 51118007 51118040 -34577714 + (CA)n Simple_repeat Simple_repeat 1 33 0 1803 124 9 74 chr15 51119972 51120105 -34575649 + AluSx SINE Alu 3 143 -169 2471 41 7 7 chr15 51120105 51120398 -34575356 + AluY SINE Alu 1 293 -18 1803 124 9 74 chr15 51120398 51120587 -34575167 + AluSx SINE Alu 143 304 -8 235 242 258 83 chr15 51121403 51121535 -34574219 - MER5A DNA MER1_type 0 189 35 180 343 112 28 chr15 51121795 51121938 -34573816 - MIR3 SINE MIR -37 171 17 572 210 210 0 chr15 51122055 51122212 -34573542 + MIR SINE MIR 46 235 -27 1220 124 23 9 chr15 51122214 51122495 -34573259 + MER2 DNA MER2_type 2 319 -26 197 296 99 0 chr15 51123114 51123195 -34572559 + MIR SINE MIR 80 168 -94 1395 141 165 4 chr15 51124453 51124701 -34571053 - AluJo SINE Alu -13 289 2 2506 83 0 6 chr15 51126919 51127233 -34568521 - AluSx SINE Alu 0 312 1 338 264 61 104 chr15 51128031 51128194 -34567560 - MIR SINE MIR -70 138 8 1025 92 0 0 chr15 51128980 51129111 -34566643 - AluSg/x SINE Alu -5 307 177 1705 167 18 7 chr15 51129119 51129427 -34566327 - AluJb SINE Alu 0 311 1 890 173 0 0 chr15 51129489 51129622 -34566132 + FLAM_C SINE Alu 1 133 -10 2243 115 0 0 chr15 51129888 51130176 -34565578 - AluSx SINE Alu -24 288 1 1744 154 0 0 chr15 51131751 51132004 -34563750 + AluSq SINE Alu 1 253 -60 258 261 109 17 chr15 51133467 51133586 -34562168 + MER5C DNA MER1_type 1 130 -194 21 0 0 0 chr15 51134976 51134997 -34560757 + AT_rich Low_complexity Low_complexity 1 21 0 302 290 155 32 chr15 51135618 51135773 -34559981 + MIR3 SINE MIR 30 203 -5 188 277 179 0 chr15 51135725 51135837 -34559917 + L2 LINE L2 769 900 -2414 * 2151 117 13 7 chr15 51135923 51136230 -34559524 + AluSq SINE Alu 1 309 -4 387 336 102 36 chr15 51136455 51136895 -34558859 + L2 LINE L2 902 1370 -1944 1074 242 19 19 chr15 51137195 51137451 -34558303 + MIR SINE MIR 3 258 -4 208 355 35 41 chr15 51137442 51137611 -34558143 + L2 LINE L2 1788 1955 -1359 * 609 190 17 9 chr15 51137596 51137712 -34558042 - L2 LINE L2 0 3313 3197 559 270 223 49 chr15 51137733 51138159 -34557595 + L2 LINE L2 1953 2452 -862 244 291 25 25 chr15 51138199 51138278 -34557476 - L2 LINE L2 -1 3271 3193 314 293 94 37 chr15 51138333 51138524 -34557230 + L2 LINE L2 2550 2751 -563 662 309 61 74 chr15 51139024 51139402 -34556352 + L2 LINE L2 2899 3271 -1 2198 118 0 40 chr15 51140156 51140478 -34555276 - AluSx SINE Alu -3 309 1 225 283 87 54 chr15 51141534 51141626 -34554128 + MIR SINE MIR 33 127 -81 1377 122 0 0 chr15 51141634 51141814 -34553940 - AluSx SINE Alu -132 180 1 441 338 136 25 chr15 51141874 51142271 -34553483 + L2 LINE L2 2064 2504 -810 204 352 6 31 chr15 51143169 51143331 -34552423 + GA-rich Low_complexity Low_complexity 2 159 0 765 305 34 8 chr15 51143758 51143994 -34551760 - MIR SINE MIR -1 261 20 206 329 37 24 chr15 51144128 51144210 -34551544 - L2 LINE L2 -223 3049 2967 260 309 236 0 chr15 51144373 51144483 -34551271 + MIR SINE MIR 49 184 -78 2420 90 6 0 chr15 51144524 51144835 -34550919 - AluSp SINE Alu 0 313 1 207 321 12 24 chr15 51144861 51144945 -34550809 - L2 LINE L2 -467 2847 2765 1803 98 12 20 chr15 51144997 51145251 -34550503 - AluSg SINE Alu 0 310 59 1687 181 4 0 chr15 51145254 51145519 -34550235 - AluJo SINE Alu -44 268 3 227 324 171 35 chr15 51145526 51145813 -34549941 - L2 LINE L2 -571 2743 2418 279 344 4 80 chr15 51146599 51146861 -34548893 + L2 LINE L2 2460 2701 -613 1514 134 5 9 chr15 51146876 51147099 -34548655 - AluJo SINE Alu -90 222 1 210 128 0 0 chr15 51147428 51147467 -34548287 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1190 60 0 0 chr15 51147476 51147610 -34548144 - AluSq/x SINE Alu -178 134 1 2632 56 0 0 chr15 51147708 51148011 -34547743 - AluY SINE Alu -8 303 1 265 200 0 0 chr15 51148074 51148119 -34547635 - MER91A DNA MER1_type -10 186 142 610 282 6 37 chr15 51148123 51148286 -34547468 - MER91A DNA MER1_type -26 170 13 2270 122 0 6 chr15 51148654 51148965 -34546789 + AluSx SINE Alu 1 309 -3 702 250 13 19 chr15 51149462 51149618 -34546136 + MIR SINE MIR 6 160 -102 1108 126 0 0 chr15 51149624 51149767 -34545987 + AluSq/x SINE Alu 1 143 -170 213 224 0 0 chr15 51150098 51150156 -34545598 + (CTA)n Simple_repeat Simple_repeat 3 60 0 657 225 103 42 chr15 51150157 51150370 -34545384 - MIR SINE MIR -6 256 31 429 311 18 30 chr15 51150491 51150655 -34545099 - L3 LINE CR1 -140 1437 1276 692 261 96 0 chr15 51150688 51150876 -34544878 - MIR SINE MIR -10 252 47 2470 92 3 0 chr15 51150899 51151204 -34544550 - AluSq SINE Alu -7 306 1 264 289 144 40 chr15 51151245 51151418 -34544336 - L3 LINE CR1 -332 1245 1055 294 267 17 0 chr15 51151465 51151525 -34544229 - L3 LINE CR1 -1197 380 320 623 299 158 19 chr15 51153076 51153629 -34542125 - L2 LINE L2 0 3272 2626 196 286 71 0 chr15 51153747 51153817 -34541937 - MIR3 SINE MIR -24 184 110 240 223 75 0 chr15 51155777 51155871 -34539883 + (CTGGGG)n Simple_repeat Simple_repeat 2 102 0 189 0 0 0 chr15 51155890 51155911 -34539843 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr15 51156631 51156651 -34539103 + (A)n Simple_repeat Simple_repeat 1 20 0 1627 168 7 29 chr15 51156953 51157262 -34538492 + AluJo SINE Alu 11 312 0 1433 173 75 7 chr15 51157874 51158152 -34537602 + AluJb SINE Alu 16 312 0 1721 104 57 57 chr15 51158601 51158899 -34536855 + AluSx SINE Alu 1 298 -14 1705 157 7 16 chr15 51159391 51159696 -34536058 + AluJb SINE Alu 11 312 0 2147 97 0 32 chr15 51160257 51160566 -34535188 + AluSx SINE Alu 6 304 -8 1764 83 0 4 chr15 51161633 51161874 -34533880 - AluSg SINE Alu -20 290 51 220 260 0 0 chr15 51163584 51163634 -34532120 + L2 LINE L2 3173 3222 -50 31 26 0 0 chr15 51163679 51163717 -34532037 + AT_rich Low_complexity Low_complexity 1 38 0 616 204 0 73 chr15 51163763 51163900 -34531854 + FLAM_A SINE Alu 2 128 -5 340 149 123 18 chr15 51164503 51164617 -34531137 - HsTC2 DNA Tc2 -124 1774 1649 691 241 52 22 chr15 51164640 51164872 -34530882 + L1M4 LINE L1 4767 5005 -1141 723 190 0 0 chr15 51164872 51164988 -34530766 + AluJb SINE Alu 2 117 -195 1749 80 72 4 chr15 51165007 51165271 -34530483 + L1MA1 LINE L1 6021 6302 0 1862 123 47 0 chr15 51165280 51165557 -34530197 + AluSx SINE Alu 1 290 -22 25 90 0 0 chr15 51165557 51165624 -34530130 + AT_rich Low_complexity Low_complexity 1 67 0 426 324 125 53 chr15 51166664 51166870 -34528884 + L2 LINE L2 2903 3142 -130 806 187 91 104 chr15 51166870 51167111 -34528643 - MER8 DNA MER2_type 0 239 2 426 324 125 53 chr15 51167111 51167225 -34528529 + L2 LINE L2 3142 3246 -26 569 176 0 66 chr15 51167252 51167388 -34528366 - AluJb SINE Alu -184 128 2 370 310 0 0 chr15 51167633 51167720 -34528034 + L2 LINE L2 3186 3272 0 393 301 29 0 chr15 51167807 51167910 -34527844 + L2 LINE L2 3204 3309 -4 2462 68 0 0 chr15 51168060 51168371 -34527383 + AluY SINE Alu 1 311 0 447 318 82 0 chr15 51168427 51168597 -34527157 - MIR SINE MIR -59 203 20 248 326 49 49 chr15 51168615 51168799 -34526955 - L2 LINE L2 -512 2802 2619 1960 141 7 0 chr15 51169000 51169304 -34526450 - AluSx SINE Alu -4 308 3 1170 203 8 30 chr15 51169329 51169595 -34526159 - AluJo SINE Alu -22 290 31 562 74 12 0 chr15 51219697 51219778 -34475976 - AluY SINE Alu -229 82 1 2182 121 0 13 chr15 51219812 51220126 -34475628 + AluSg SINE Alu 1 310 0 710 285 91 9 chr15 51220148 51220369 -34475385 - MIR SINE MIR -3 259 21 2441 91 0 0 chr15 51220405 51220714 -34475040 + AluSc SINE Alu 1 309 0 1164 147 31 87 chr15 51221149 51221241 -34474513 + Tigger2 DNA MER2_type 2439 2535 -173 2189 98 7 23 chr15 51221241 51221548 -34474206 + AluSq SINE Alu 2 303 -10 1164 147 31 87 chr15 51221548 51221741 -34474013 + Tigger2 DNA MER2_type 2535 2708 0 21 36 0 0 chr15 51221838 51221866 -34473888 + AT_rich Low_complexity Low_complexity 1 28 0 2484 66 0 3 chr15 51222002 51222305 -34473449 - AluY SINE Alu -9 302 1 635 171 14 71 chr15 51222492 51222632 -34473122 + AluJo SINE Alu 116 247 -65 1499 160 113 11 chr15 51222952 51223227 -34472527 - AluJb SINE Alu -6 306 4 814 201 34 90 chr15 51223338 51223404 -34472350 + MER58A DNA MER1_type 1 69 -2351 1485 171 18 87 chr15 51223404 51223738 -34472016 - AluJo SINE Alu -1 311 1 814 201 34 90 chr15 51223738 51223905 -34471849 + MER58A DNA MER1_type 69 221 -3 201 156 0 0 chr15 51224172 51224204 -34471550 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 36 0 0 0 chr15 51224812 51224848 -34470906 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr15 51224955 51224978 -34470776 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2002 101 45 0 chr15 51224980 51225248 -34470506 - AluSx SINE Alu -32 280 1 229 288 252 29 chr15 51225529 51225668 -34470086 - L3 LINE CR1 -1 1576 1407 2044 88 81 0 chr15 51226013 51226286 -34469468 + AluSg SINE Alu 1 295 -15 254 238 0 16 chr15 51227230 51227293 -34468461 + (CA)n Simple_repeat Simple_repeat 2 63 0 2328 110 0 3 chr15 51227705 51228015 -34467739 + AluSx SINE Alu 2 310 -2 2338 101 0 7 chr15 51228208 51228514 -34467240 + AluSx SINE Alu 1 304 -8 204 40 0 0 chr15 51228605 51228630 -34467124 + (GA)n Simple_repeat Simple_repeat 2 26 0 1583 178 10 23 chr15 51229186 51229490 -34466264 + AluJb SINE Alu 1 300 -12 938 138 0 7 chr15 51229915 51230053 -34465701 + AluSq/x SINE Alu 1 137 -176 4265 50 0 0 chr15 51230053 51230619 -34465135 - L1P LINE L1 -4553 1593 1028 * 6119 39 0 0 chr15 51230618 51231647 -34464107 + L1PA5 LINE L1 4986 6014 -140 338 310 110 19 chr15 51231777 51231932 -34463822 + L1ME3A LINE L1 5994 6162 -8 2475 31 7 3 chr15 51232424 51232718 -34463036 - AluY SINE Alu -16 295 1 605 202 16 16 chr15 51233734 51233858 -34461896 - FLAM_C SINE Alu -13 130 7 261 0 0 0 chr15 51234561 51234590 -34461164 + (TTG)n Simple_repeat Simple_repeat 2 30 0 326 258 86 49 chr15 51234825 51234988 -34460766 - HAL1 LINE L1 -5 2502 2334 1717 143 44 7 chr15 51235549 51235821 -34459933 + AluSx SINE Alu 1 282 -30 2386 95 0 3 chr15 51237446 51237751 -34458003 + AluSg SINE Alu 1 304 -6 653 263 19 13 chr15 51238146 51238302 -34457452 + FAM SINE Alu 1 157 -18 2328 60 19 84 chr15 51238408 51238776 -34456978 - LTR14A LTR ERVK 0 344 1 374 218 58 83 chr15 51238776 51238932 -34456822 + L1 LINE L1 4396 4547 -1599 222 179 26 0 chr15 51239294 51239333 -34456421 - L2 LINE L2 -99 3214 3175 257 221 131 35 chr15 51239992 51240137 -34455617 + L1ME LINE L1 5742 5900 -221 1062 107 17 45 chr15 51240396 51240573 -34455181 - AluSg/x SINE Alu -12 298 127 2340 93 0 7 chr15 51240873 51241174 -34454580 - AluSx SINE Alu -13 299 1 1248 205 81 31 chr15 51241267 51241589 -34454165 - MER2 DNA MER2_type -7 338 1 1853 167 0 19 chr15 51241622 51241933 -34453821 - AluJo SINE Alu -7 305 1 778 176 7 7 chr15 51241944 51242080 -34453674 - AluJb SINE Alu -174 138 3 184 318 45 68 chr15 51242107 51242195 -34453559 + MIR SINE MIR 38 123 -85 2197 122 3 10 chr15 51242418 51242730 -34453024 + AluY SINE Alu 1 310 -1 2008 128 3 3 chr15 51242732 51243014 -34452740 + AluSx SINE Alu 1 282 -30 195 114 0 0 chr15 51243028 51243063 -34452691 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 493 221 29 0 chr15 51243172 51243276 -34452478 - MER81 DNA DNA 0 114 8 2103 100 7 0 chr15 51244078 51244384 -34451370 + AluSg SINE Alu 1 308 0 538 251 82 62 chr15 51244434 51244677 -34451077 - MIR SINE MIR -13 249 2 1325 252 187 43 chr15 51244688 51245272 -34450482 + L2 LINE L2 2222 2889 -425 422 309 112 38 chr15 51245270 51245464 -34450290 - L2 LINE L2 -1889 1425 1247 * 1761 157 33 10 chr15 51245464 51245764 -34449990 + AluJb SINE Alu 1 307 -5 422 309 112 38 chr15 51245764 51245909 -34449845 - L2 LINE L2 -2067 1247 1061 1080 250 14 3 chr15 51246056 51246352 -34449402 + AluSx SINE Alu 1 299 -3 1221 40 7 0 chr15 51246564 51246716 -34449038 + L1PA5 LINE L1 6000 6152 -2 966 183 17 0 chr15 51246716 51246891 -34448863 + AluYa5 SINE Alu 134 311 0 342 291 40 20 chr15 51246904 51247052 -34448702 + L1M3 LINE L1 2842 2992 -3154 2283 98 0 0 chr15 51247398 51247693 -34448061 - AluSx SINE Alu -12 300 6 425 200 62 134 chr15 51247811 51248054 -34447700 + L1M3 LINE L1 4548 4766 -1380 679 190 0 78 chr15 51248054 51248196 -34447558 + FLAM_A SINE Alu 1 131 -2 425 200 62 134 chr15 51248196 51248257 -34447497 + L1M3 LINE L1 4766 4830 -1316 272 275 0 0 chr15 51248432 51248512 -34447242 + L1MC4 LINE L1 6959 7038 -1004 7428 32 10 0 chr15 51248525 51250151 -34445603 + L1PA5 LINE L1 4523 6154 0 624 241 108 35 chr15 51250212 51250528 -34445226 + L1MC4a LINE L1 6954 7292 -516 998 168 0 0 chr15 51250538 51250693 -34445061 - FRAM SINE Alu -21 155 1 872 289 41 48 chr15 51250694 51250967 -34444787 + L1MC4 LINE L1 7405 7679 -363 2158 116 7 7 chr15 51250967 51251268 -34444486 + AluSq SINE Alu 1 301 -12 872 289 41 48 chr15 51251268 51251421 -34444333 + L1MC4 LINE L1 7679 7832 -210 2081 139 3 3 chr15 51251421 51251724 -34444030 - AluSx SINE Alu -9 303 1 872 289 41 48 chr15 51251724 51251937 -34443817 + L1MC4 LINE L1 7832 8040 -2 2177 101 0 0 chr15 51252074 51252350 -34443404 + AluSx SINE Alu 1 276 -36 218 57 57 0 chr15 51252353 51252388 -34443366 + A-rich Low_complexity Low_complexity 1 37 0 399 306 22 33 chr15 51252390 51252573 -34443181 + L1M3 LINE L1 5152 5332 -814 1744 163 0 50 chr15 51252573 51252884 -34442870 + AluJo SINE Alu 1 297 -15 189 0 0 0 chr15 51252884 51252905 -34442849 + (GA)n Simple_repeat Simple_repeat 2 22 0 246 205 33 57 chr15 51252916 51253038 -34442716 + L1M3 LINE L1 5325 5443 -737 23 108 0 0 chr15 51253039 51253132 -34442622 + AT_rich Low_complexity Low_complexity 1 93 0 1646 166 66 4 chr15 51253236 51253507 -34442247 + AluJo SINE Alu 5 292 -20 562 282 116 53 chr15 51253571 51253855 -34441899 + L2 LINE L2 2824 3125 -188 818 138 0 23 chr15 51253905 51254035 -34441719 - FLAM_C SINE Alu -6 127 1 549 269 21 93 chr15 51254084 51254418 -34441336 + MLT1H LTR MaLR 52 361 -188 526 270 16 0 chr15 51254540 51254666 -34441088 + L2 LINE L2 3186 3313 0 2346 113 0 3 chr15 51255215 51255526 -34440228 + AluSx SINE Alu 1 310 -2 738 282 137 28 chr15 51256054 51256412 -34439342 - LTR16C LTR ERVL -93 398 2 2187 126 0 0 chr15 51256735 51257029 -34438725 + AluSx SINE Alu 1 294 -18 414 297 172 78 chr15 51257310 51257747 -34438007 - L2 LINE L2 0 3272 2804 826 164 93 16 chr15 51257778 51258116 -34437638 - L1ME LINE L1 -645 5519 5159 909 269 8 4 chr15 51258163 51258419 -34437335 - L1ME LINE L1 -4628 2197 1941 787 36 85 0 chr15 51258420 51258585 -34437169 + (TA)n Simple_repeat Simple_repeat 2 180 0 940 236 94 26 chr15 51258627 51259051 -34436703 - L1ME LINE L1 -4891 1755 1303 323 227 78 56 chr15 51259086 51259229 -34436525 - L1ME LINE L1 -5186 1360 1210 622 306 57 60 chr15 51259253 51259855 -34435899 - L1ME LINE L1 -5385 1249 650 4281 148 18 0 chr15 51259981 51260697 -34435057 - L1MC1 LINE L1 -1 6332 5604 580 107 0 0 chr15 51260719 51260803 -34434951 + L1MC1 LINE L1 6249 6332 -1 1817 138 28 18 chr15 51260949 51261137 -34434617 - L1MC1 LINE L1 -743 5590 5405 23994 30 2 0 chr15 51261137 51264812 -34430942 - L1PA5 LINE L1 -4 6150 2476 1817 138 28 18 chr15 51264812 51265015 -34430739 - L1MC1 LINE L1 -928 5405 5194 390 175 0 0 chr15 51265015 51265095 -34430659 + (TA)n Simple_repeat Simple_repeat 2 81 0 1120 168 5 16 chr15 51265099 51265289 -34430465 - AluJo SINE Alu -31 281 94 2058 248 22 2 chr15 51265289 51265877 -34429877 - L1MC1 LINE L1 -947 5199 4600 4511 165 37 1 chr15 51265885 51266752 -34429002 - L1MB3 LINE L1 -1 6418 5521 5419 189 85 37 chr15 51267378 51267553 -34428201 - L1MB3 LINE L1 -867 5515 5350 745 188 0 8 chr15 51267553 51267686 -34428068 - FLAM_C SINE Alu -1 132 1 5419 189 85 37 chr15 51267686 51268369 -34427385 - L1MB3 LINE L1 -1032 5350 4701 1609 169 20 10 chr15 51268369 51268664 -34427090 - AluJb SINE Alu -14 298 1 5419 189 85 37 chr15 51268664 51269283 -34426471 - L1MB3 LINE L1 -1681 4701 3966 1217 120 190 166 chr15 51269293 51269709 -34426045 + MSTB LTR MaLR 1 426 0 6269 111 28 94 chr15 51269746 51269898 -34425856 - L1MB3 LINE L1 -4224 2160 1999 2121 139 7 0 chr15 51269898 51270193 -34425561 - AluSx SINE Alu -15 297 1 6269 111 28 94 chr15 51270193 51271232 -34424522 - L1MB3 LINE L1 -4385 1999 893 2485 65 0 16 chr15 51271232 51271541 -34424213 + AluY SINE Alu 1 304 -7 2216 100 0 0 chr15 51271542 51271841 -34423913 + AluY SINE Alu 1 299 -12 6269 111 28 94 chr15 51271841 51271972 -34423782 - L1MB3 LINE L1 -5323 1061 923 616 168 19 0 chr15 51271972 51272079 -34423675 + AluSg/x SINE Alu 189 297 -15 246 32 0 0 chr15 51272084 51272115 -34423639 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1330 77 0 0 chr15 51272256 51272425 -34423329 + AluY SINE Alu 141 309 -2 360 59 0 0 chr15 51273028 51273079 -34422675 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2126 106 3 7 chr15 51273079 51273367 -34422387 - AluSx SINE Alu -25 287 1 374 185 63 215 chr15 51273445 51273595 -34422159 - MER5B DNA MER1_type -3 175 63 804 185 0 0 chr15 51273595 51273725 -34422029 + FLAM_C SINE Alu 1 130 -3 374 185 63 215 chr15 51273725 51273779 -34421975 - MER5B DNA MER1_type -115 63 2 299 272 80 74 chr15 51274012 51274174 -34421580 + MER5B DNA MER1_type 1 163 -15 428 224 109 41 chr15 51274508 51274655 -34421099 + MIR SINE MIR 73 229 -33 2371 117 0 0 chr15 51274709 51275018 -34420736 - AluSx SINE Alu -3 309 1 2062 132 7 0 chr15 51275019 51275314 -34420440 - AluSx SINE Alu -15 297 1 507 261 29 53 chr15 51275389 51275596 -34420158 - L1ME1 LINE L1 -17 6543 6342 1604 153 25 28 chr15 51275628 51275910 -34419844 - AluJo SINE Alu -27 285 5 923 188 0 39 chr15 51275924 51276105 -34419649 - FAM SINE Alu -1 174 1 3282 232 173 21 chr15 51276161 51276516 -34419238 - L1ME1 LINE L1 -823 5717 5417 2183 65 25 0 chr15 51276516 51276791 -34418963 + AluY SINE Alu 30 311 0 3282 232 173 21 chr15 51276791 51277324 -34418430 - L1ME1 LINE L1 -1123 5417 4966 2251 114 0 7 chr15 51277324 51277632 -34418122 - AluSq SINE Alu -7 306 1 3282 232 173 21 chr15 51277632 51278824 -34416930 - L1ME1 LINE L1 -1574 4966 3254 341 204 102 9 chr15 51278833 51278941 -34416813 - L1ME1 LINE L1 -3560 2980 2863 560 259 98 38 chr15 51278949 51279694 -34416060 - L1ME1 LINE L1 -3769 2771 1974 267 152 0 0 chr15 51279697 51279743 -34416011 + CT-rich Low_complexity Low_complexity 3 48 0 1783 141 0 4 chr15 51280746 51281016 -34414738 + AluSg SINE Alu 26 294 -16 335 298 110 17 chr15 51281040 51281332 -34414422 + L1MC/D LINE L1 5510 5828 -1980 388 222 203 20 chr15 51281512 51281665 -34414089 + MER5A DNA MER1_type 9 189 0 405 190 93 30 chr15 51281929 51282081 -34413673 + LTR28 LTR ERV1 1 139 -286 280 243 14 0 chr15 51282082 51282156 -34413598 + LTR1 LTR ERV1 109 183 -602 * 2309 180 190 31 chr15 51282131 51282402 -34413352 + LTR28 LTR ERV1 307 534 -486 2108 122 7 3 chr15 51282402 51282705 -34413049 + AluSq SINE Alu 1 304 -9 2309 180 190 31 chr15 51282705 51283049 -34412705 + LTR28 LTR ERV1 534 1020 0 1832 161 7 10 chr15 51283927 51284231 -34411523 - AluJb SINE Alu -9 303 1 533 213 121 54 chr15 51285848 51286087 -34409667 - HAL1 LINE L1 -6 2501 2247 408 222 111 26 chr15 51286158 51286311 -34409443 + HAL1 LINE L1 1223 1388 -1119 24 0 0 0 chr15 51286342 51286366 -34409388 + AT_rich Low_complexity Low_complexity 1 24 0 2290 83 0 3 chr15 51286374 51286663 -34409091 + AluSc SINE Alu 12 299 -10 260 254 0 0 chr15 51286730 51286801 -34408953 + HAL1 LINE L1 1574 1644 -863 231 260 201 18 chr15 51286865 51287034 -34408720 + HAL1 LINE L1 1701 1900 -607 1394 107 71 0 chr15 51287489 51287686 -34408068 + AluSx SINE Alu 1 211 -101 621 131 10 0 chr15 51287799 51287898 -34407856 - AluS SINE Alu -213 100 1 1517 158 50 23 chr15 51290257 51290517 -34405237 + AluJo SINE Alu 1 267 -45 249 125 0 0 chr15 51290973 51291013 -34404741 + L1MC4 LINE L1 7622 7661 -381 1183 183 37 15 chr15 51291093 51291366 -34404388 - L1MB7 LINE L1 -34 6150 5872 328 333 121 42 chr15 51291640 51292169 -34403585 + L2 LINE L2 2543 3105 -167 313 241 222 24 chr15 51293280 51293487 -34402267 + L3 LINE CR1 1312 1559 -18 433 226 70 9 chr15 51294455 51294570 -34401184 - LTR33 LTR ERVL -399 122 1 287 302 24 8 chr15 51294991 51295117 -34400637 + GA-rich Low_complexity Low_complexity 2 129 0 433 226 70 9 chr15 51295333 51295448 -34400306 - LTR33 LTR ERVL -399 122 1 225 345 35 0 chr15 51295526 51295613 -34400141 + MIR SINE MIR 99 188 -74 2288 89 0 3 chr15 51296197 51296490 -34399264 - AluSg SINE Alu -4 306 15 1795 128 81 31 chr15 51296716 51297037 -34398717 - MER1B DNA MER1_type 0 337 1 866 141 0 0 chr15 51297131 51297259 -34398495 - FLAM_C SINE Alu -15 128 1 1419 207 58 21 chr15 51297650 51298031 -34397723 - Charlie1a DNA MER1_type -1002 453 59 1736 154 23 39 chr15 51298070 51298375 -34397379 - AluJb SINE Alu -10 302 3 1730 121 0 127 chr15 51298962 51299294 -34396460 + AluJb SINE Alu 2 291 -11 23 0 0 0 chr15 51300248 51300271 -34395483 + AT_rich Low_complexity Low_complexity 1 23 0 2106 120 17 3 chr15 51300344 51300643 -34395111 + AluSx SINE Alu 1 303 -9 466 216 21 0 chr15 51300819 51300916 -34394838 - Tigger7 DNA MER2_type 0 2487 2389 * 1110 235 42 15 chr15 51300914 51301174 -34394580 - Tigger7 DNA MER2_type -2220 267 1 180 326 231 18 chr15 51301639 51301912 -34393842 + L3 LINE CR1 1180 1510 -67 368 306 27 34 chr15 51301916 51302063 -34393691 - MER5B DNA MER1_type 0 178 33 2375 81 12 3 chr15 51302188 51302533 -34393221 + L1PB1 LINE L1 5435 5782 -369 639 223 0 0 chr15 51302548 51302696 -34393058 + (TA)n Simple_repeat Simple_repeat 1 148 0 2380 125 0 5 chr15 51302696 51303065 -34392689 + L1PB1 LINE L1 5782 6148 -3 296 183 33 0 chr15 51303076 51303136 -34392618 + L1MD1 LINE L1 6156 6217 -25 2483 67 10 6 chr15 51303136 51303448 -34392306 - AluSq SINE Alu 0 313 1 213 262 0 0 chr15 51303486 51303528 -34392226 + MER5B DNA MER1_type 131 172 -6 1558 209 50 97 chr15 51303799 51304177 -34391577 + MLT1F1 LTR MaLR 7 377 -190 1590 186 0 65 chr15 51304177 51304499 -34391255 + AluSx SINE Alu 1 301 -11 1558 209 50 97 chr15 51304499 51304679 -34391075 + MLT1F1 LTR MaLR 377 564 -3 2150 85 10 14 chr15 51305203 51305499 -34390255 + AluSq SINE Alu 1 319 0 184 42 0 0 chr15 51305499 51305523 -34390231 + (CAA)n Simple_repeat Simple_repeat 2 180 0 184 291 95 54 chr15 51305921 51306069 -34389685 + L2 LINE L2 2886 3039 -233 316 235 202 0 chr15 51306249 51306368 -34389386 + MIR SINE MIR 80 222 -40 212 162 0 0 chr15 51307119 51307156 -34388598 + CT-rich Low_complexity Low_complexity 1 37 0 242 294 0 0 chr15 51307342 51307434 -34388320 + (CGA)n Simple_repeat Simple_repeat 2 93 0 294 95 0 0 chr15 51307560 51307602 -34388152 + (CGG)n Simple_repeat Simple_repeat 1 42 0 2173 85 7 3 chr15 51309062 51309355 -34386399 - AluSg SINE Alu -16 294 1 450 226 144 13 chr15 51309666 51309850 -34385904 - L1MC/D LINE L1 -459 5662 5525 1608 149 40 33 chr15 51310498 51310799 -34384955 - AluSx SINE Alu -9 303 1 2198 115 0 3 chr15 51310805 51311110 -34384644 - AluSx SINE Alu -8 304 1 214 237 68 34 chr15 51311227 51311286 -34384468 - L2 LINE L2 -9 3304 3244 227 283 80 71 chr15 51311304 51311417 -34384337 - MER5B DNA MER1_type -33 145 32 1367 184 0 13 chr15 51311566 51311805 -34383949 - AluJo SINE Alu -47 265 30 1036 125 125 0 chr15 51311810 51311978 -34383776 + MER46A DNA MER2_type 48 236 0 2308 78 3 10 chr15 51312104 51312399 -34383355 - AluSc SINE Alu -16 293 1 2369 79 0 7 chr15 51312558 51312862 -34382892 - AluY SINE Alu -9 302 1 1991 135 10 0 chr15 51312957 51313253 -34382501 - AluSx SINE Alu -13 299 1 516 156 52 0 chr15 51313365 51313461 -34382293 - MER5A DNA MER1_type 0 189 89 2272 81 14 3 chr15 51313819 51314116 -34381638 + AluSp SINE Alu 1 300 -13 2322 100 0 7 chr15 51314120 51314421 -34381333 + AluSx SINE Alu 1 299 -13 395 256 126 42 chr15 51314736 51314783 -34380971 - MIR SINE MIR -10 252 210 2011 84 23 45 chr15 51314783 51315091 -34380663 - AluY SINE Alu -10 301 1 395 256 126 42 chr15 51315091 51315258 -34380496 - MIR SINE MIR -52 210 20 2017 128 14 3 chr15 51315499 51315808 -34379946 - AluSx SINE Alu 0 312 1 188 288 15 30 chr15 51315867 51315933 -34379821 - L2 LINE L2 -7 3306 3242 774 209 0 0 chr15 51316059 51316188 -34379566 + FLAM_A SINE Alu 4 132 -1 187 320 58 19 chr15 51316273 51316376 -34379378 + L2 LINE L2 2909 3015 -257 2261 102 3 10 chr15 51317284 51317587 -34378167 - AluSp SINE Alu -12 301 1 452 247 100 41 chr15 51317913 51318083 -34377671 + MIR SINE MIR 34 213 -49 416 318 80 107 chr15 51318253 51318330 -34377424 - L2 LINE L2 0 3272 3194 1946 114 6 51 chr15 51318330 51318645 -34377109 + AluSx SINE Alu 1 301 -11 416 318 80 107 chr15 51318645 51318830 -34376924 - L2 LINE L2 -78 3194 3022 2304 74 7 23 chr15 51318830 51319129 -34376625 + AluY SINE Alu 1 294 -17 416 318 80 107 chr15 51319129 51319277 -34376477 - L2 LINE L2 -250 3022 2872 1998 117 7 17 chr15 51319303 51319603 -34376151 + AluSx SINE Alu 1 297 -15 183 283 19 85 chr15 51319695 51319801 -34375953 - MIR3 SINE MIR -105 103 5 200 279 139 12 chr15 51320031 51320117 -34375637 - L2 LINE L2 -79 3234 3138 703 201 29 32 chr15 51320156 51320384 -34375370 - MER106B DNA MER1_type -3 1056 5 21 36 0 0 chr15 51320468 51320496 -34375258 + AT_rich Low_complexity Low_complexity 1 28 0 863 225 18 50 chr15 51321061 51321283 -34374471 + MLT1E1 LTR MaLR 389 603 -51 722 212 0 0 chr15 51321342 51321455 -34374299 - FLAM_A SINE Alu -17 116 4 187 414 52 0 chr15 51321616 51321732 -34374022 + L2 LINE L2 3174 3295 -18 388 328 133 3 chr15 51321764 51322072 -34373682 + L1ME LINE L1 4951 5298 -848 489 268 139 13 chr15 51322098 51322427 -34373327 + L1ME LINE L1 5330 5701 -420 252 298 25 8 chr15 51322435 51322453 -34373301 + L1ME LINE L1 5762 5778 -343 2409 78 0 7 chr15 51322453 51322760 -34372994 + AluY SINE Alu 1 305 -6 252 298 25 8 chr15 51322760 51322862 -34372892 + L1ME LINE L1 5778 5884 -237 415 190 0 4 chr15 51322870 51322952 -34372802 - L1MB8 LINE L1 -34 6137 6051 1615 167 56 0 chr15 51323446 51323715 -34372039 + AluJo SINE Alu 5 288 -24 2475 87 0 0 chr15 51324293 51324602 -34371152 - AluSc SINE Alu 0 309 1 693 285 91 9 chr15 51324638 51324859 -34370895 + MIR SINE MIR 21 259 -3 2314 111 0 13 chr15 51324881 51325197 -34370557 - AluSx SINE Alu 0 312 1 26 30 0 0 chr15 51325395 51325428 -34370326 + AT_rich Low_complexity Low_complexity 1 33 0 4032 92 9 4 chr15 51325528 51326071 -34369683 - MER41B LTR ERV1 -69 566 21 1723 169 7 7 chr15 51326071 51326355 -34369399 + AluJb SINE Alu 13 296 -16 2218 106 0 0 chr15 51326750 51327064 -34368690 - AluSx SINE Alu 0 314 1 1968 156 0 3 chr15 51328931 51329238 -34366516 + AluJb SINE Alu 2 307 -5 1371 100 0 11 chr15 51330504 51330684 -34365070 + AluSx SINE Alu 1 178 -134 201 114 23 23 chr15 51330707 51330751 -34365003 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 274 233 142 8 chr15 51330830 51330950 -34364804 + L1ME4a LINE L1 5751 5886 -235 341 234 39 62 chr15 51330999 51331127 -34364627 + L1ME4a LINE L1 5991 6115 -6 329 263 53 0 chr15 51332212 51332288 -34363466 - MIR SINE MIR -136 126 47 388 62 31 0 chr15 51333531 51333595 -34362159 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 254 238 0 16 chr15 51334109 51334172 -34361582 + (CA)n Simple_repeat Simple_repeat 2 63 0 2171 129 0 3 chr15 51334584 51334895 -34360859 + AluSx SINE Alu 2 311 -1 270 98 20 0 chr15 51335284 51335335 -34360419 + AluSp/q SINE Alu 252 303 0 288 0 0 0 chr15 51335338 51335370 -34360384 + (TA)n Simple_repeat Simple_repeat 2 33 0 531 229 124 20 chr15 51335768 51335921 -34359833 - MIR3 SINE MIR -24 184 16 235 309 105 31 chr15 51336003 51336165 -34359589 - MER5B DNA MER1_type -3 175 2 2259 117 13 0 chr15 51336373 51336680 -34359074 + AluSx SINE Alu 1 311 -1 363 261 161 28 chr15 51337383 51337601 -34358153 + MLT1L LTR MaLR 363 609 -6 526 101 101 11 chr15 51337620 51337709 -34358045 + L1MC1 LINE L1 6237 6333 0 294 272 11 33 chr15 51338196 51338380 -34357374 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 370 258 50 0 chr15 51338849 51338969 -34356785 - L2 LINE L2 -1228 2086 1961 1382 162 106 25 chr15 51339133 51339417 -34356337 + AluJb SINE Alu 1 307 -5 235 231 10 10 chr15 51339640 51339744 -34356010 + (TA)n Simple_repeat Simple_repeat 1 104 0 249 147 29 15 chr15 51339776 51339844 -34355910 + (TA)n Simple_repeat Simple_repeat 2 70 0 677 186 0 0 chr15 51339847 51339949 -34355805 + AluJo/FLAM SINE Alu 13 114 -198 1833 101 97 0 chr15 51339950 51340218 -34355536 - AluSx SINE Alu -18 294 1 948 182 0 0 chr15 51341267 51341426 -34354328 + FRAM SINE Alu 1 151 -25 475 281 105 56 chr15 51341449 51341549 -34354205 - L1MC4a LINE L1 -1878 5930 5836 2260 95 7 7 chr15 51341549 51341845 -34353909 + AluSq SINE Alu 1 296 -17 475 281 105 56 chr15 51341845 51342117 -34353637 - L1MC4a LINE L1 -1972 5836 5540 1790 174 7 0 chr15 51342157 51342450 -34353304 + AluSx SINE Alu 1 295 -17 294 243 54 68 chr15 51342450 51342598 -34353156 - L1MC4a LINE L1 -984 5162 5017 * 4820 150 28 24 chr15 51342585 51343593 -34352161 - L1MD2 LINE L1 -220 6139 5119 813 170 0 15 chr15 51343600 51343735 -34352019 - FLAM_C SINE Alu 0 133 1 1197 134 0 22 chr15 51343768 51343947 -34351807 - AluSg/x SINE Alu -4 306 132 2321 90 0 0 chr15 51343947 51344246 -34351508 - AluY SINE Alu -12 299 1 22 0 0 0 chr15 51344625 51344647 -34351107 + AT_rich Low_complexity Low_complexity 1 22 0 663 170 85 0 chr15 51344694 51344800 -34350954 - FLAM_A SINE Alu -18 115 1 748 262 48 13 chr15 51344862 51345091 -34350663 - MLT1L LTR MaLR -29 586 350 1915 128 10 51 chr15 51345112 51345257 -34350497 + AluJb SINE Alu 1 128 -184 2292 93 7 0 chr15 51345257 51345557 -34350197 + AluSp SINE Alu 1 302 -11 1915 128 10 51 chr15 51345557 51345723 -34350031 + AluJb SINE Alu 128 299 -13 364 290 86 16 chr15 51345864 51346050 -34349704 - L1MC4a LINE L1 -1652 4494 4296 2435 87 0 3 chr15 51347252 51347564 -34348190 - AluSx SINE Alu 0 312 2 940 173 77 0 chr15 51347572 51347728 -34348026 + AluJb SINE Alu 115 282 -30 982 18 0 0 chr15 51347728 51347841 -34347913 - AluYa5/8 SINE Alu -1 309 197 2341 227 22 47 chr15 51347865 51348464 -34347290 + L1M4 LINE L1 3951 4533 -1613 5078 37 5 0 chr15 51348464 51349033 -34346721 - L1PA5 LINE L1 -7 6147 5576 2341 227 22 47 chr15 51349033 51349108 -34346646 + L1M4 LINE L1 4533 4608 -1538 4070 138 22 54 chr15 51349120 51349773 -34345981 + L1M4c LINE L1 21 694 -5690 6501 97 22 8 chr15 51349773 51350681 -34345073 + L1PA13 LINE L1 4775 5704 -459 2368 80 3 3 chr15 51350681 51350981 -34344773 + AluSq SINE Alu 1 300 -13 6501 97 22 8 chr15 51350981 51351444 -34344310 + L1PA13 LINE L1 5704 6159 -4 2337 95 0 7 chr15 51351447 51351752 -34344002 + AluSc SINE Alu 2 304 -5 4070 138 22 54 chr15 51351752 51351831 -34343923 + L1M4c LINE L1 696 733 -5651 1169 161 0 10 chr15 51351828 51352027 -34343727 - L1M4c LINE L1 -5978 406 210 * 1116 122 24 19 chr15 51352026 51352231 -34343523 + L1M4c LINE L1 731 936 -5448 * 2084 103 0 4 chr15 51352233 51352528 -34343226 + AluSp SINE Alu 16 309 0 255 103 0 0 chr15 51352633 51352672 -34343082 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 1329 142 154 12 chr15 51352696 51352942 -34342812 - AluJb SINE Alu -31 281 1 249 228 89 0 chr15 51352952 51353031 -34342723 - L1MDa LINE L1 -4591 1949 1864 * 697 255 40 95 chr15 51353024 51353248 -34342506 - L1MDa LINE L1 -5028 1515 1280 1601 178 11 4 chr15 51353248 51353517 -34342237 + AluJb SINE Alu 23 293 -19 1638 140 79 4 chr15 51353526 51353804 -34341950 + AluSx SINE Alu 1 299 -13 697 255 40 95 chr15 51353804 51353876 -34341878 - L1MDa LINE L1 -5271 1272 1198 2249 79 3 3 chr15 51353876 51354166 -34341588 + AluSp SINE Alu 21 310 -3 697 255 40 95 chr15 51354166 51354501 -34341253 - L1MDa LINE L1 -5345 1198 908 199 252 36 63 chr15 51354789 51354900 -34340854 + MER5A DNA MER1_type 77 184 -5 619 213 16 25 chr15 51356079 51356201 -34339553 - FLAM_A SINE Alu -10 123 3 1852 157 7 0 chr15 51356232 51356525 -34339229 - AluSx SINE Alu -17 295 1 2306 101 0 0 chr15 51357312 51357609 -34338145 + AluSc SINE Alu 3 299 -10 21 0 0 0 chr15 51357946 51357967 -34337787 + AT_rich Low_complexity Low_complexity 1 21 0 2463 86 0 6 chr15 51358272 51358587 -34337167 - AluSp SINE Alu 0 313 1 304 103 86 0 chr15 51358872 51358930 -34336824 + L1MC1 LINE L1 6254 6316 -17 430 276 98 34 chr15 51358996 51359261 -34336493 - L1MEd LINE L1 -3649 2480 2199 1979 180 0 3 chr15 51359643 51359948 -34335806 - AluJb SINE Alu -8 304 1 375 341 59 6 chr15 51360201 51360352 -34335402 - L1MEd LINE L1 -4880 1239 1077 1985 130 0 20 chr15 51360352 51360651 -34335103 - AluSx SINE Alu -18 294 2 375 341 59 6 chr15 51360651 51360669 -34335085 - L1MEd LINE L1 -5042 1077 1061 451 272 98 47 chr15 51360920 51361035 -34334719 + L1M4 LINE L1 2922 3030 -3116 1841 171 0 19 chr15 51361035 51361351 -34334403 + AluSx SINE Alu 1 310 -2 451 272 98 47 chr15 51361351 51361489 -34334265 + L1M4 LINE L1 3030 3188 -2958 5415 147 39 20 chr15 51361512 51362622 -34333132 + L1MC1 LINE L1 5199 6328 -5 2543 62 0 3 chr15 51362745 51363051 -34332703 - AluY SINE Alu -6 305 1 1452 107 175 20 chr15 51363051 51363303 -34332451 - AluSx SINE Alu -16 296 6 2085 134 0 19 chr15 51363688 51363995 -34331759 - AluSx SINE Alu -11 301 1 258 308 65 49 chr15 51364000 51364387 -34331367 + L1M4 LINE L1 3798 4190 -1956 193 241 19 19 chr15 51364450 51364504 -34331250 + MER5B DNA MER1_type 17 70 -108 831 142 0 37 chr15 51364607 51364741 -34331013 - FLAM_C SINE Alu 0 133 5 1091 251 47 11 chr15 51365256 51365531 -34330223 + AluJb SINE Alu 4 288 -14 436 320 39 28 chr15 51365986 51366164 -34329590 - LTR67 LTR ERVL -114 443 264 22 35 0 0 chr15 51367239 51367268 -34328486 + AT_rich Low_complexity Low_complexity 1 29 0 1735 175 14 7 chr15 51367377 51367674 -34328080 + AluJo SINE Alu 1 299 -13 2395 72 3 0 chr15 51367724 51368015 -34327739 + AluY SINE Alu 1 292 -19 1058 203 65 5 chr15 51368075 51368292 -34327462 - AluJo SINE Alu -39 273 44 420 279 112 16 chr15 51369516 51369839 -34325915 + L1ME3A LINE L1 895 1248 -4871 450 153 24 0 chr15 51369856 51369941 -34325813 + HsTC2 DNA Tc2 6 92 -1806 1754 174 0 0 chr15 51370061 51370373 -34325381 - AluSx SINE Alu 0 312 1 641 264 94 75 chr15 51370858 51371603 -34324151 + L1ME3A LINE L1 3059 3817 -2312 340 272 73 63 chr15 51371714 51371920 -34323834 + L1ME3A LINE L1 3964 4171 -1958 1774 155 21 3 chr15 51371939 51372229 -34323525 - AluSx SINE Alu -17 295 1 719 256 45 78 chr15 51372365 51372451 -34323303 + L1ME3A LINE L1 5599 5686 -467 1564 183 47 0 chr15 51372451 51372725 -34323029 + AluJo SINE Alu 9 295 -17 719 256 45 78 chr15 51372725 51372997 -34322757 + L1ME3A LINE L1 5686 5945 -208 338 310 110 19 chr15 51373115 51373270 -34322484 + L1ME3A LINE L1 5977 6145 -8 2475 31 7 3 chr15 51373762 51374056 -34321698 - AluY SINE Alu -16 295 1 605 202 16 16 chr15 51375072 51375196 -34320558 - FLAM_C SINE Alu -13 130 7 261 0 0 0 chr15 51375899 51375928 -34319826 + (TTG)n Simple_repeat Simple_repeat 2 30 0 326 258 86 49 chr15 51376163 51376326 -34319428 - HAL1 LINE L1 -5 2502 2334 1717 143 44 7 chr15 51376887 51377159 -34318595 + AluSx SINE Alu 1 282 -30 2332 104 0 3 chr15 51378784 51379093 -34316661 + AluSg SINE Alu 1 308 -2 2309 105 0 7 chr15 51379286 51379592 -34316162 + AluSx SINE Alu 1 304 -8 204 40 0 0 chr15 51379683 51379708 -34316046 + (GA)n Simple_repeat Simple_repeat 2 26 0 1583 178 10 23 chr15 51380264 51380568 -34315186 + AluJb SINE Alu 1 300 -12 938 138 0 7 chr15 51380993 51381131 -34314623 + AluSq/x SINE Alu 1 137 -176 4265 50 0 0 chr15 51381131 51381697 -34314057 - L1P LINE L1 -4553 1593 1028 * 6119 39 0 0 chr15 51381696 51382725 -34313029 + L1PA5 LINE L1 4986 6014 -140 307 340 0 32 chr15 51383106 51383291 -34312463 + G-rich Low_complexity Low_complexity 1 179 0 227 67 0 0 chr15 51383319 51383349 -34312405 + (CGGGGG)n Simple_repeat Simple_repeat 6 35 0 298 127 45 2 chr15 51383353 51383430 -34312324 + Alu SINE Alu 244 286 -16 21 36 0 0 chr15 51383615 51383643 -34312111 + AT_rich Low_complexity Low_complexity 1 28 0 210 71 0 0 chr15 51384617 51384645 -34311109 + (CA)n Simple_repeat Simple_repeat 2 29 0 1961 156 0 7 chr15 51385616 51385911 -34309843 + AluSx SINE Alu 1 293 -19 861 188 13 26 chr15 51386125 51386279 -34309475 - FAM SINE Alu -33 152 1 1140 142 44 34 chr15 51386558 51386745 -34309009 - AluJo SINE Alu -5 307 116 191 0 103 0 chr15 51386745 51386784 -34308970 + T-rich Low_complexity Low_complexity 5 47 0 1140 142 44 34 chr15 51386784 51386800 -34308954 - AluJo SINE Alu -196 116 102 768 139 8 16 chr15 51386830 51386959 -34308795 - AluJb SINE Alu -180 132 5 2371 69 0 41 chr15 51386981 51387300 -34308454 - AluY SINE Alu -5 306 1 2260 105 3 0 chr15 51387302 51387606 -34308148 - AluSq SINE Alu -4 309 5 2164 114 0 0 chr15 51389166 51389464 -34306290 - AluSx SINE Alu -14 298 1 2209 109 0 0 chr15 51390765 51391048 -34304706 - AluSx SINE Alu -29 283 1 384 230 11 107 chr15 51391195 51391373 -34304381 + L1 LINE L1 4355 4515 -1631 316 335 73 20 chr15 51391859 51392160 -34303594 + L1ME LINE L1 5294 5610 -2198 327 285 119 13 chr15 51392168 51392319 -34303435 + L1ME LINE L1 5628 5794 -327 2074 130 3 7 chr15 51392366 51392666 -34303088 - AluSx SINE Alu -13 299 1 2100 138 0 0 chr15 51392854 51393151 -34302603 - AluSx SINE Alu -15 297 1 2937 145 42 87 chr15 51393465 51393719 -34302035 - L1MB8 LINE L1 -5 6173 5909 2159 115 3 0 chr15 51393719 51394006 -34301748 + AluSg SINE Alu 6 293 -17 2937 145 42 87 chr15 51394006 51394470 -34301284 - L1MB8 LINE L1 -269 5909 5490 1681 205 0 3 chr15 51394470 51394763 -34300991 - AluJb SINE Alu -20 292 1 2937 145 42 87 chr15 51394763 51394821 -34300933 - L1MB8 LINE L1 -688 5490 5431 1191 168 5 0 chr15 51394822 51395038 -34300716 - AluJb SINE Alu 0 308 92 354 195 12 0 chr15 51395043 51395125 -34300629 - L1MB8 LINE L1 -894 5440 5358 386 169 15 0 chr15 51395836 51395901 -34299853 + L2 LINE L2 3243 3308 -5 582 302 102 26 chr15 51396235 51396619 -34299135 - LTR16B LTR ERVL 0 464 52 2729 129 46 28 chr15 51396640 51397143 -34298611 - L1PA16 LINE L1 0 6166 5655 24 53 0 0 chr15 51397164 51397202 -34298552 + AT_rich Low_complexity Low_complexity 1 38 0 822 116 35 29 chr15 51397202 51397374 -34298380 - L1PA16 LINE L1 -676 5489 5317 407 134 0 0 chr15 51397387 51397454 -34298300 - MER41B LTR ERV1 -88 547 481 1716 199 19 10 chr15 51397454 51397872 -34297882 - L1PA16 LINE L1 -818 5328 4907 2107 193 50 15 chr15 51397877 51398412 -34297342 - L1MB8 LINE L1 -1748 4398 3845 1975 110 0 4 chr15 51398414 51398678 -34297076 - AluSq SINE Alu -50 263 1 1051 178 55 55 chr15 51399095 51399331 -34296423 + MER8 DNA MER2_type 1 236 -3 2118 119 3 19 chr15 51399336 51399646 -34296108 - AluSx SINE Alu -7 305 1 1822 190 148 6 chr15 51399655 51400140 -34295614 - L1MB5 LINE L1 -42 6132 5579 228 210 129 16 chr15 51400189 51400251 -34295503 - L2 LINE L2 0 3313 3245 492 266 250 5 chr15 51400465 51400649 -34295105 - MIR SINE MIR -8 254 26 314 242 15 0 chr15 51400911 51400977 -34294777 + MER69 DNA AcHobo 1 67 -1159 293 246 0 0 chr15 51401072 51401129 -34294625 + MER69 DNA AcHobo 2469 2525 -1 26 50 0 0 chr15 51401664 51401704 -34294050 + AT_rich Low_complexity Low_complexity 1 40 0 2012 98 33 0 chr15 51401775 51402050 -34293704 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr15 51402053 51402077 -34293677 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 518 215 81 13 chr15 51402300 51402449 -34293305 + MER58B DNA MER1_type 183 341 0 1633 176 3 27 chr15 51403137 51403433 -34292321 - AluJo SINE Alu -23 289 1 2646 179 58 17 chr15 51404123 51404708 -34291046 - MLT1A1-int LTR MaLR -1126 609 1 1567 178 93 24 chr15 51404708 51405040 -34290714 - MLT1A1 LTR MaLR 0 365 11 1549 162 64 4 chr15 51405138 51405299 -34290455 - AluSx SINE Alu 0 301 151 333 47 0 0 chr15 51405299 51405342 -34290412 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1549 162 64 4 chr15 51405342 51405465 -34290289 - AluSx SINE Alu -150 151 1 1930 159 10 0 chr15 51409101 51409396 -34286358 + AluJb SINE Alu 1 298 -14 687 242 134 16 chr15 51409560 51409754 -34286000 + MIR SINE MIR 29 245 -17 690 200 0 37 chr15 51409892 51410027 -34285727 + FAM SINE Alu 37 166 -19 247 191 64 0 chr15 51410092 51410139 -34285615 - MIR SINE MIR -21 241 192 223 416 20 13 chr15 51410554 51410703 -34285051 - L2 LINE L2 -230 3042 2893 2484 74 3 3 chr15 51410921 51411232 -34284522 + AluSp SINE Alu 1 311 -2 520 311 33 0 chr15 51411308 51411488 -34284266 + MIR SINE MIR 64 249 -13 201 246 105 0 chr15 51411649 51411706 -34284048 + MIR SINE MIR 194 256 -6 286 282 0 12 chr15 51411849 51411934 -34283820 + L3 LINE CR1 1367 1450 -127 346 203 0 0 chr15 51412172 51412231 -34283523 + AluJo/FLAM SINE Alu 56 114 -188 1833 101 97 0 chr15 51412232 51412500 -34283254 - AluSx SINE Alu -18 294 1 954 182 0 0 chr15 51413549 51413708 -34282046 + FRAM SINE Alu 1 151 -25 37 39 0 0 chr15 51413714 51413765 -34281989 + AT_rich Low_complexity Low_complexity 1 51 0 420 286 86 57 chr15 51413803 51413831 -34281923 - L1MC4a LINE L1 -1959 5849 5823 2259 95 7 7 chr15 51413831 51414127 -34281627 + AluSq SINE Alu 1 296 -17 420 286 86 57 chr15 51414127 51414399 -34281355 - L1MC4a LINE L1 -1985 5823 5540 2130 133 3 0 chr15 51414439 51414733 -34281021 + AluSx SINE Alu 1 295 -17 243 247 55 68 chr15 51414733 51414879 -34280875 - L1MC4a LINE L1 -984 5162 5019 * 4409 150 28 24 chr15 51414868 51415876 -34279878 - L1MD2 LINE L1 -220 6139 5119 760 170 0 15 chr15 51415883 51416018 -34279736 - FLAM_C SINE Alu 0 133 1 1213 134 0 22 chr15 51416051 51416230 -34279524 - AluSg/x SINE Alu -4 306 132 2311 90 0 0 chr15 51416230 51416529 -34279225 - AluY SINE Alu -12 299 1 22 0 0 0 chr15 51416908 51416930 -34278824 + AT_rich Low_complexity Low_complexity 1 22 0 627 170 85 0 chr15 51416977 51417083 -34278671 - FLAM_A SINE Alu -18 115 1 662 262 48 13 chr15 51417145 51417374 -34278380 - MLT1L LTR MaLR -29 586 350 1930 128 10 51 chr15 51417395 51417540 -34278214 + AluJb SINE Alu 1 128 -184 2289 93 7 0 chr15 51417540 51417840 -34277914 + AluSp SINE Alu 1 302 -11 1930 128 10 51 chr15 51417840 51418006 -34277748 + AluJb SINE Alu 128 299 -13 371 290 86 16 chr15 51418147 51418333 -34277421 - L1MC4a LINE L1 -1652 4494 4296 2283 109 3 6 chr15 51419535 51419848 -34275906 - AluSx SINE Alu 0 312 1 1822 190 148 6 chr15 51419857 51420342 -34275412 - L1MB5 LINE L1 -42 6132 5579 228 210 129 16 chr15 51420391 51420453 -34275301 - L2 LINE L2 0 3313 3245 492 266 250 5 chr15 51420667 51420851 -34274903 - MIR SINE MIR -8 254 26 314 242 15 0 chr15 51421113 51421179 -34274575 + MER69 DNA AcHobo 1 67 -110 293 246 0 0 chr15 51421274 51421331 -34274423 + MER69 DNA AcHobo 2469 2525 -1 26 50 0 0 chr15 51421866 51421906 -34273848 + AT_rich Low_complexity Low_complexity 1 40 0 2012 98 33 0 chr15 51421977 51422252 -34273502 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr15 51422255 51422279 -34273475 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 543 220 73 13 chr15 51422502 51422652 -34273102 + MER58B DNA MER1_type 183 341 0 1633 176 3 27 chr15 51423340 51423636 -34272118 - AluJo SINE Alu -23 289 1 2646 179 58 17 chr15 51424326 51424911 -34270843 - MLT1A1-int LTR MaLR -1126 609 1 1567 178 93 24 chr15 51424911 51425243 -34270511 - MLT1A1 LTR MaLR 0 365 11 1549 162 64 4 chr15 51425341 51425502 -34270252 - AluSx SINE Alu 0 301 151 333 47 0 0 chr15 51425502 51425545 -34270209 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1549 162 64 4 chr15 51425545 51425668 -34270086 - AluSx SINE Alu -150 151 1 1930 159 10 0 chr15 51429304 51429599 -34266155 + AluJb SINE Alu 1 298 -14 687 242 134 16 chr15 51429763 51429957 -34265797 + MIR SINE MIR 29 245 -17 690 200 0 37 chr15 51430095 51430230 -34265524 + FAM SINE Alu 37 166 -19 247 191 64 0 chr15 51430295 51430342 -34265412 - MIR SINE MIR -21 241 192 223 416 20 13 chr15 51430757 51430906 -34264848 - L2 LINE L2 -230 3042 2893 2471 72 3 3 chr15 51431124 51431431 -34264323 + AluSp SINE Alu 1 307 -6 520 311 33 0 chr15 51431511 51431691 -34264063 + MIR SINE MIR 64 249 -13 201 246 105 0 chr15 51431852 51431909 -34263845 + MIR SINE MIR 194 256 -6 319 303 198 6 chr15 51432052 51432214 -34263540 + L3 LINE CR1 1367 1559 -18 203 184 0 0 chr15 51432317 51432355 -34263399 + T-rich Low_complexity Low_complexity 1 38 0 1969 138 7 0 chr15 51432511 51432808 -34262946 - AluSx SINE Alu -13 299 1 2106 83 80 0 chr15 51433461 51433737 -34262017 - AluSg SINE Alu -12 298 1 229 288 252 29 chr15 51434082 51434221 -34261533 + L3 LINE CR1 1407 1576 -1 2002 101 45 0 chr15 51434502 51434770 -34260984 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr15 51434772 51434795 -34260959 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 36 0 0 0 chr15 51434902 51434938 -34260816 + AT_rich Low_complexity Low_complexity 1 36 0 201 156 0 0 chr15 51435546 51435578 -34260176 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 814 201 34 90 chr15 51435845 51436012 -34259742 - MER58A DNA MER1_type -2199 221 69 1485 171 18 87 chr15 51436012 51436346 -34259408 + AluJo SINE Alu 1 311 -1 814 201 34 90 chr15 51436346 51436412 -34259342 - MER58A DNA MER1_type -2351 69 1 1471 164 113 11 chr15 51436523 51436798 -34258956 + AluJb SINE Alu 4 306 -6 635 171 14 71 chr15 51437118 51437258 -34258496 - AluJo SINE Alu -65 247 116 2219 110 0 3 chr15 51437445 51437754 -34258000 + AluY SINE Alu 1 308 -3 3805 119 112 11 chr15 51437755 51438463 -34257291 - Tigger2 DNA MER2_type -276 2442 1664 1622 104 111 22 chr15 51438461 51438777 -34256977 - Tigger2 DNA MER2_type -2374 344 1 * 1564 131 127 4 chr15 51438871 51439138 -34256616 - AluSx SINE Alu -2 300 1 798 210 49 30 chr15 51439153 51439420 -34256334 - L1MC5 LINE L1 -379 7582 7311 649 192 181 6 chr15 51439573 51439750 -34256004 + MER3 DNA MER1_type 1 208 -1 4060 159 45 26 chr15 51439868 51440719 -34255035 - L1MA7 LINE L1 -3 6288 5422 443 266 110 93 chr15 51441239 51441476 -34254278 + MIR SINE MIR 8 248 -14 737 198 102 6 chr15 51542526 51542683 -34153071 - MER58A DNA MER1_type -16 208 37 21 0 0 0 chr15 51543145 51543166 -34152588 + AT_rich Low_complexity Low_complexity 1 21 0 770 252 13 48 chr15 51543243 51543473 -34152281 - MER58A DNA MER1_type 0 224 3 677 252 55 95 chr15 51544117 51544141 -34151613 - L1MC5 LINE L1 -990 6818 6795 8312 108 29 17 chr15 51544141 51545219 -34150535 + HSMAR2 DNA Mariner 5 1102 -200 1881 156 3 3 chr15 51545219 51545508 -34150246 + AluJb SINE Alu 1 289 -23 8312 108 29 17 chr15 51545508 51545711 -34150043 + HSMAR2 DNA Mariner 1102 1301 -1 677 252 55 95 chr15 51545711 51545733 -34150021 - L1MC5 LINE L1 -1013 6795 6774 2220 118 0 3 chr15 51545733 51546037 -34149717 - AluSx SINE Alu -9 303 1 677 252 55 95 chr15 51546037 51546470 -34149284 - L1MC5 LINE L1 -1034 6774 6431 1184 232 101 67 chr15 51546699 51547164 -34148590 + L1ME3A LINE L1 5595 6075 -95 420 262 56 8 chr15 51548072 51548198 -34147556 + MIR SINE MIR 13 144 -118 614 346 198 14 chr15 51550583 51551169 -34144585 + L2 LINE L2 2002 2695 -619 1143 297 85 16 chr15 51551210 51551846 -34143908 + L1ME4a LINE L1 5268 5947 -174 260 247 82 35 chr15 51552255 51552340 -34143414 + L2 LINE L2 3141 3229 -43 440 286 222 0 chr15 51553091 51553276 -34142478 + MIR SINE MIR 26 251 -11 2129 108 3 10 chr15 51553865 51554161 -34141593 - AluSx SINE Alu -17 295 2 2269 93 0 0 chr15 51555083 51555374 -34140380 + AluSc SINE Alu 3 293 -16 1506 136 29 23 chr15 51555769 51556077 -34139677 - L1MA4 LINE L1 -6 6294 5985 835 263 11 44 chr15 51556689 51556959 -34138795 - L1ME2 LINE L1 -12 6152 5892 2900 283 51 30 chr15 51557590 51558516 -34137238 - L1MA3 LINE L1 -20 6285 5341 2538 96 45 0 chr15 51558710 51559063 -34136691 - THE1C LTR MaLR -6 369 1 312 73 0 0 chr15 51559257 51559298 -34136456 - MLT2C2 LTR ERVL 0 464 424 1480 109 42 45 chr15 51559345 51559610 -34136144 + MER21A LTR ERV1 1 264 -667 2952 166 50 24 chr15 51559615 51560156 -34135598 + MER21A LTR ERV1 376 930 -1 1756 190 110 14 chr15 51560164 51560601 -34135153 - MLT2B1 LTR ERVL -41 479 1 204 80 40 60 chr15 51560967 51561017 -34134737 + (GGGTG)n Simple_repeat Simple_repeat 3 51 0 5854 248 28 29 chr15 51561018 51562766 -34132988 - L1M2 LINE L1 -4384 2466 722 1064 315 56 55 chr15 51562927 51563550 -34132204 - L1M2 LINE L1 -6223 626 3 1881 156 4 0 chr15 51563701 51563976 -34131778 + AluSx SINE Alu 1 276 -36 240 32 0 0 chr15 51563976 51564001 -34131753 + (T)n Simple_repeat Simple_repeat 1 25 0 1691 157 39 7 chr15 51564177 51564457 -34131297 - AluJo SINE Alu -23 289 1 28 0 0 0 chr15 51564461 51564489 -34131265 + AT_rich Low_complexity Low_complexity 1 28 0 939 203 74 49 chr15 51564677 51564749 -34131005 - MER69 DNA AcHobo 0 2526 2457 632 240 0 8 chr15 51564749 51564870 -34130884 + FLAM_A SINE Alu 1 120 -13 939 203 74 49 chr15 51564870 51565147 -34130607 - MER69 DNA AcHobo -69 2457 2168 872 248 102 31 chr15 51565172 51565466 -34130288 - MER69 DNA AcHobo -781 445 131 1802 243 54 10 chr15 51565855 51566377 -34129377 - L1MC4a LINE L1 -1908 5900 5356 352 345 199 21 chr15 51567268 51567684 -34128070 + L2 LINE L2 551 892 -2422 2216 128 0 0 chr15 51567684 51567980 -34127774 - AluSx SINE Alu -16 296 1 352 345 199 21 chr15 51567980 51568414 -34127340 + L2 LINE L2 892 1552 -1762 1158 158 26 15 chr15 51568419 51568684 -34127070 - L1M4 LINE L1 -3113 3033 2766 1055 263 24 6 chr15 51568782 51569117 -34126637 - L1MEc LINE L1 -6013 383 43 252 297 70 38 chr15 51569141 51569326 -34126428 + L2 LINE L2 1621 1811 -1503 * 502 275 108 24 chr15 51569320 51569432 -34126322 + MER5A DNA MER1_type 9 141 -48 2294 94 3 0 chr15 51569432 51569720 -34126034 + AluSg SINE Alu 3 291 -19 502 275 108 24 chr15 51569720 51569774 -34125980 + MER5A DNA MER1_type 141 189 0 * 533 313 152 66 chr15 51569774 51571041 -34124713 + L2 LINE L2 1805 3233 -39 1795 164 0 24 chr15 51571212 51571505 -34124249 - AluJo SINE Alu -26 286 1 1962 113 175 22 chr15 51571984 51572355 -34123399 - MSTA LTR MaLR 0 428 1 231 331 33 8 chr15 51572461 51572582 -34123172 - LTR67 LTR ERVL -1 556 433 1231 242 135 31 chr15 51572780 51573359 -34122395 - L1MC4 LINE L1 -217 7825 7187 847 153 0 0 chr15 51574849 51574980 -34120774 + FLAM_C SINE Alu 1 131 -12 590 271 68 55 chr15 51575688 51576039 -34119715 - L2 LINE L2 -218 3054 2690 325 299 61 37 chr15 51576192 51576356 -34119398 - MIR SINE MIR -3 259 92 198 0 0 0 chr15 51578545 51578567 -34117187 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1506 184 33 0 chr15 51578592 51578741 -34117013 - AluJb SINE Alu -31 281 117 195 42 0 0 chr15 51578741 51578765 -34116989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1506 184 33 0 chr15 51578765 51578887 -34116867 - AluJb SINE Alu -195 117 1 430 240 40 0 chr15 51579184 51579284 -34116470 + MER58A DNA MER1_type 1 104 -3 561 300 28 17 chr15 51579809 51579989 -34115765 + MIR SINE MIR 55 236 -26 423 270 80 48 chr15 51580008 51580360 -34115394 - L1M4 LINE L1 -1168 4978 4616 2179 217 52 16 chr15 51580567 51581129 -34114625 + MER119 DNA MER1_type 1 582 -1 2203 101 10 0 chr15 51582177 51582465 -34113289 - AluSg SINE Alu -19 291 1 287 161 0 16 chr15 51584512 51584574 -34111180 + CT-rich Low_complexity Low_complexity 4 64 0 208 191 24 0 chr15 51584576 51584618 -34111136 + T-rich Low_complexity Low_complexity 3 45 0 312 309 95 33 chr15 51585456 51585666 -34110088 - L1MC/D LINE L1 -1988 5820 5598 423 119 0 0 chr15 51585692 51585759 -34109995 + L1M4 LINE L1 5577 5643 -541 799 214 6 0 chr15 51585780 51585948 -34109806 + L1MB7 LINE L1 6002 6170 -14 276 253 0 55 chr15 51585991 51586082 -34109672 - LTR67 LTR ERVL -14 543 458 251 261 111 39 chr15 51586332 51586485 -34109269 - HAL1 LINE L1 -2297 210 47 2259 103 3 0 chr15 51586514 51586805 -34108949 + AluSx SINE Alu 1 292 -20 201 39 0 0 chr15 51586813 51586839 -34108915 + (TTTAA)n Simple_repeat Simple_repeat 4 29 0 26 50 0 0 chr15 51587264 51587304 -34108450 + AT_rich Low_complexity Low_complexity 1 40 0 508 287 64 13 chr15 51587304 51587461 -34108293 - MIR SINE MIR -86 176 12 1125 216 60 40 chr15 51587504 51587855 -34107899 - L1MC4 LINE L1 -1 8041 7684 2837 226 113 40 chr15 51587978 51588721 -34107033 - L1MC4 LINE L1 -516 7526 6692 325 58 39 0 chr15 51588721 51588773 -34106981 + (TA)n Simple_repeat Simple_repeat 1 54 0 2837 226 113 40 chr15 51588773 51589021 -34106733 - L1MC4 LINE L1 -1350 6692 6463 28 29 0 0 chr15 51589121 51589156 -34106598 + AT_rich Low_complexity Low_complexity 1 35 0 2100 109 46 0 chr15 51589541 51589824 -34105930 + AluSx SINE Alu 1 296 -16 257 290 0 0 chr15 51590669 51590731 -34105023 + (TG)n Simple_repeat Simple_repeat 2 63 0 1628 184 7 7 chr15 51590732 51591015 -34104739 - AluJb SINE Alu -28 284 2 848 285 202 12 chr15 51591030 51591542 -34104212 + L2 LINE L2 2712 3309 -4 224 271 0 57 chr15 51592718 51592788 -34102966 + L2 LINE L2 3206 3271 -1 752 176 0 0 chr15 51592904 51593023 -34102731 - FLAM_C SINE Alu -24 119 1 2283 102 0 0 chr15 51593603 51593907 -34101847 + AluY SINE Alu 1 304 -7 749 192 46 0 chr15 51594110 51594261 -34101493 - MER20 DNA MER1_type -61 158 1 804 191 93 27 chr15 51594269 51594590 -34101164 - Charlie5 DNA MER1_type -27 2585 1 605 335 61 10 chr15 51595153 51595449 -34100305 - L2 LINE L2 -6 3307 2997 256 236 28 14 chr15 51595731 51595803 -34099951 + L2 LINE L2 3169 3241 -31 4844 186 61 70 chr15 51596456 51596654 -34099100 + L1MDa LINE L1 1 199 -6341 1796 155 79 0 chr15 51596654 51596932 -34098822 - AluSx SINE Alu -12 300 1 4844 186 61 70 chr15 51596932 51598020 -34097734 + L1MDa LINE L1 199 1275 -5265 694 336 150 30 chr15 51598128 51598855 -34096899 + L2 LINE L2 2454 3272 0 185 200 0 0 chr15 51599031 51599066 -34096688 + L2 LINE L2 2709 2743 -571 1351 143 32 9 chr15 51599071 51599469 -34096285 + L1 LINE L1 5015 5420 -731 2116 79 0 0 chr15 51599569 51599846 -34095908 + L1PB1 LINE L1 5870 6146 -5 1539 87 5 0 chr15 51600848 51601044 -34094710 - AluSg/x SINE Alu -15 297 101 512 73 0 0 chr15 51601044 51601112 -34094642 + AluS SINE Alu 24 91 -221 22 0 0 0 chr15 51602158 51602180 -34093574 + AT_rich Low_complexity Low_complexity 1 22 0 822 277 23 4 chr15 51602407 51602663 -34093091 + MIR SINE MIR 2 262 0 222 37 0 0 chr15 51602673 51602700 -34093054 + (TGG)n Simple_repeat Simple_repeat 3 29 0 360 270 92 31 chr15 51603525 51603688 -34092066 + L1MDa LINE L1 1221 1393 -5328 512 135 0 0 chr15 51603728 51603817 -34091937 - AluJ/FRAM SINE Alu -6 306 218 1995 110 4 0 chr15 51603817 51604089 -34091665 - AluJb SINE Alu -39 273 1 374 283 80 42 chr15 51604106 51604378 -34091376 + L1MDa LINE L1 1399 1771 -1130 226 200 0 0 chr15 51604456 51604506 -34091248 + HAL1 LINE L1 1431 1480 -1027 2593 32 10 3 chr15 51604767 51605076 -34090678 + AluYa5 SINE Alu 1 311 0 598 236 56 0 chr15 51605082 51605243 -34090511 + MLT1G LTR MaLR 4 173 -417 1812 138 15 69 chr15 51605319 51605709 -34090045 + L1 LINE L1 4867 5235 -911 356 185 48 41 chr15 51605705 51605851 -34089903 + L1MC4a LINE L1 3101 3247 -2899 * 1462 206 46 6 chr15 51605885 51606211 -34089543 + MER58B DNA MER1_type 3 341 0 564 240 42 23 chr15 51606220 51606437 -34089317 + L1MC4a LINE L1 5269 5489 -681 253 229 83 28 chr15 51606583 51606727 -34089027 - L1M LINE L1 -2403 5405 5254 2849 187 52 119 chr15 51606851 51607756 -34087998 - MER21B LTR ERV1 -19 844 1 333 309 101 49 chr15 51607772 51608079 -34087675 - L1M4 LINE L1 -1017 5129 4807 1949 122 11 28 chr15 51609020 51609344 -34086410 - AluSx SINE Alu 0 319 1 21 36 0 0 chr15 51609926 51609954 -34085800 + AT_rich Low_complexity Low_complexity 1 28 0 556 236 159 13 chr15 51610253 51610410 -34085344 - MER5A DNA MER1_type 0 189 10 1368 91 0 0 chr15 51610666 51610842 -34084912 - AluSg/x SINE Alu -5 305 130 2044 148 0 16 chr15 51610856 51611160 -34084594 - AluSx SINE Alu -13 299 1 447 263 180 32 chr15 51611232 51611548 -34084206 + L1MC4a LINE L1 5535 5897 -1911 992 196 9 36 chr15 51611574 51611793 -34083961 - AluJo SINE Alu -13 299 87 3713 113 19 33 chr15 51612218 51612791 -34082963 - MER61E LTR ERV1 -4 565 1 887 203 35 10 chr15 51612795 51612997 -34082757 + L1M3 LINE L1 5438 5644 -539 4705 137 44 5 chr15 51612997 51613524 -34082230 - LTR39 LTR ERV1 0 783 217 3505 27 0 0 chr15 51613524 51613933 -34081821 + L1PA5 LINE L1 5746 6154 0 4705 137 44 5 chr15 51613933 51614157 -34081597 - LTR39 LTR ERV1 -566 217 3 742 211 20 0 chr15 51614159 51614311 -34081443 + L1M3 LINE L1 5641 5795 -376 193 320 147 0 chr15 51614695 51614770 -34080984 - L2 LINE L2 -8 3305 3220 1922 115 19 58 chr15 51614826 51615138 -34080616 - AluSx SINE Alu -6 306 7 189 0 0 0 chr15 51616289 51616310 -34079444 + (T)n Simple_repeat Simple_repeat 1 21 0 270 323 112 14 chr15 51616898 51617121 -34078633 + L1MC4a LINE L1 6414 6658 -1150 238 237 10 72 chr15 51617137 51617234 -34078520 + L1MC4 LINE L1 6922 7012 -1030 1435 224 81 107 chr15 51617248 51617928 -34077826 + L1MC5 LINE L1 6923 7619 -342 1841 153 0 4 chr15 51617928 51618202 -34077552 + AluJb SINE Alu 1 273 -39 1435 224 81 107 chr15 51618202 51618260 -34077494 + L1MC5 LINE L1 7619 7677 -284 2021 124 3 0 chr15 51618260 51618585 -34077169 - AluSx SINE Alu 0 326 1 1435 224 81 107 chr15 51618585 51618834 -34076920 + L1MC5 LINE L1 7677 7887 -74 760 246 31 16 chr15 51618853 51619044 -34076710 + MIR SINE MIR 20 213 -49 212 340 0 0 chr15 51619200 51619250 -34076504 - MIR SINE MIR -133 75 26 1359 201 152 9 chr15 51619289 51619722 -34076032 - LTR54B LTR ERV1 -3 495 1 634 232 85 25 chr15 51620380 51620462 -34075292 - LTR50 LTR ERVL 0 795 719 2424 87 0 0 chr15 51620462 51620760 -34074994 + AluSx SINE Alu 1 298 -14 634 232 85 25 chr15 51620760 51620916 -34074838 - LTR50 LTR ERVL -76 719 544 1227 230 71 41 chr15 51621711 51622177 -34073577 + L1M4 LINE L1 4129 4608 -1538 428 350 33 6 chr15 51622247 51622427 -34073327 + L3 LINE CR1 1392 1576 -1 26 0 0 0 chr15 51622680 51622706 -34073048 + AT_rich Low_complexity Low_complexity 1 26 0 314 325 24 24 chr15 51623115 51623241 -34072513 - MIR3 SINE MIR -41 167 42 1896 131 24 0 chr15 51623990 51624280 -34071474 - AluJo SINE Alu -15 297 1 21 0 0 0 chr15 51625103 51625124 -34070630 + AT_rich Low_complexity Low_complexity 1 21 0 1370 222 92 35 chr15 51625568 51626167 -34069587 - LTR41 LTR ERVL -28 745 1 453 346 103 11 chr15 51626191 51626463 -34069291 - L1ME4a LINE L1 -209 5912 5616 2456 132 65 2 chr15 51627953 51628356 -34067398 - MSTA LTR MaLR 0 428 1 2184 131 8 37 chr15 51628467 51628842 -34066912 - THE1B LTR MaLR 0 364 1 2628 250 111 89 chr15 51628905 51629033 -34066721 + L1MCc LINE L1 19 143 -6280 2073 134 42 28 chr15 51629033 51629392 -34066362 - THE1B LTR MaLR 0 364 1 2628 250 111 89 chr15 51629392 51630617 -34065137 + L1MCc LINE L1 143 1401 -5022 180 0 0 0 chr15 51630697 51630717 -34065037 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1512 71 0 20 chr15 51630717 51630904 -34064850 - AluSq SINE Alu -26 287 103 3769 145 56 25 chr15 51630977 51631193 -34064561 + L1MC1 LINE L1 5595 5803 -530 2094 135 0 6 chr15 51631193 51631505 -34064249 + AluSx SINE Alu 3 312 0 3769 145 56 25 chr15 51631505 51631983 -34063771 + L1MC1 LINE L1 5803 6311 -22 2144 170 8 8 chr15 51631980 51632345 -34063409 + L1MC/D LINE L1 5448 5812 -532 * 436 224 43 115 chr15 51632343 51632692 -34063062 + L1MCc LINE L1 1716 2039 -4902 * 599 254 75 67 chr15 51632799 51633200 -34062554 - L1ME4a LINE L1 -188 5933 5530 1569 178 18 22 chr15 51633274 51633550 -34062204 + AluJb SINE Alu 1 275 -37 1034 247 4 21 chr15 51633663 51633906 -34061848 + MER8 DNA MER2_type 1 239 0 21 36 0 0 chr15 51634225 51634253 -34061501 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 51634581 51634602 -34061152 + AT_rich Low_complexity Low_complexity 1 21 0 225 333 153 0 chr15 51635302 51635413 -34060341 + MIR3 SINE MIR 48 175 -33 265 330 68 8 chr15 51635638 51635756 -34059998 + MIR SINE MIR 88 212 -50 568 251 114 43 chr15 51636244 51636499 -34059255 - L2 LINE L2 -47 3266 2994 427 267 226 14 chr15 51636752 51637040 -34058714 + L1MC4a LINE L1 5594 5942 -1866 24 0 0 0 chr15 51637421 51637445 -34058309 + AT_rich Low_complexity Low_complexity 1 24 0 257 299 201 8 chr15 51637559 51637693 -34058061 - MIR3 SINE MIR -6 202 43 315 252 165 17 chr15 51637858 51637973 -34057781 - MER94 DNA DNA 0 134 3 208 304 9 71 chr15 51638118 51638230 -34057524 - L2 LINE L2 -205 3067 2963 189 278 56 91 chr15 51638367 51638565 -34057189 - L2 LINE L2 -568 2746 2556 2078 183 70 5 chr15 51638591 51638991 -34056763 - MSTB LTR MaLR 0 426 1 328 266 130 24 chr15 51640985 51641154 -34054600 + L2 LINE L2 1218 1404 -1910 2066 129 3 3 chr15 51641350 51641645 -34054109 + AluSx SINE Alu 1 295 -17 291 207 0 0 chr15 51641784 51641842 -34053912 - HsTC2 DNA Tc2 -1811 87 30 342 223 51 87 chr15 51641865 51641955 -34053799 - L1MEc LINE L1 -3734 2413 2343 2117 135 0 0 chr15 51641955 51642251 -34053503 - AluSx SINE Alu -13 299 4 342 223 51 87 chr15 51642251 51642348 -34053406 - L1MEc LINE L1 -3804 2343 2244 332 340 62 21 chr15 51642562 51642706 -34053048 - HAL1 LINE L1 -742 1765 1616 3758 174 43 5 chr15 51643092 51643828 -34051926 - L1MC3 LINE L1 -8 7777 7014 879 231 72 49 chr15 51643817 51643912 -34051842 - L1MCb LINE L1 -2391 4173 4082 * 1166 165 57 140 chr15 51643912 51644318 -34051436 - MLT1A2 LTR MaLR -2 372 1 879 231 72 49 chr15 51644318 51644569 -34051185 - L1MCb LINE L1 -2482 4082 3819 754 181 0 14 chr15 51644573 51644711 -34051043 + AluSq/x SINE Alu 1 136 -177 357 189 5 81 chr15 51644712 51644897 -34050857 + GA-rich Low_complexity Low_complexity 3 173 0 2473 229 137 17 chr15 51644915 51644945 -34050809 - L1MCb LINE L1 -2778 3786 3761 1923 138 6 29 chr15 51644945 51645256 -34050498 - AluJb SINE Alu -8 304 1 2473 229 137 17 chr15 51645256 51646153 -34049601 - L1MCb LINE L1 -2803 3761 2748 2405 84 3 10 chr15 51646226 51646537 -34049217 - AluSp SINE Alu -4 309 1 3178 187 69 19 chr15 51646903 51647598 -34048156 - L1MB3 LINE L1 -7 6176 5447 2624 217 102 16 chr15 51647602 51649478 -34046276 - L1MCb LINE L1 -3862 2702 570 1646 236 28 16 chr15 51649699 51650126 -34045628 - L1MCb LINE L1 -5613 432 1 2021 137 7 3 chr15 51650181 51650481 -34045273 - AluSx SINE Alu -11 301 1 187 54 54 0 chr15 51650857 51650894 -34044860 + T-rich Low_complexity Low_complexity 2 40 0 945 169 0 58 chr15 51651079 51651097 -34044657 - FRAM SINE Alu -149 163 146 318 50 0 0 chr15 51651097 51651137 -34044617 + (TG)n Simple_repeat Simple_repeat 2 41 0 945 169 0 58 chr15 51651137 51651290 -34044464 - FRAM SINE Alu -166 146 2 402 336 59 30 chr15 51651442 51651653 -34044101 - MIR SINE MIR -10 252 33 206 263 0 18 chr15 51651727 51651784 -34043970 + L2 LINE L2 2978 3033 -239 31 26 0 0 chr15 51652005 51652043 -34043711 + AT_rich Low_complexity Low_complexity 1 38 0 299 272 19 29 chr15 51652683 51652786 -34042968 - L3 LINE CR1 -127 1450 1349 2113 137 0 6 chr15 51652850 51653164 -34042590 + AluJb SINE Alu 1 312 0 2147 78 16 52 chr15 51653982 51654291 -34041463 + AluSq SINE Alu 1 298 -15 588 272 53 86 chr15 51655403 51655707 -34040047 + L1MEc LINE L1 36 326 -6070 2421 70 0 0 chr15 51655707 51656006 -34039748 + AluSc SINE Alu 1 299 -10 588 272 53 86 chr15 51656006 51656098 -34039656 + L1MEc LINE L1 326 419 -5977 1375 202 7 14 chr15 51656116 51656403 -34039351 - L1MD3 LINE L1 -279 7716 7432 658 259 32 53 chr15 51656840 51657124 -34038630 + L1M1 LINE L1 5556 5834 -297 211 250 62 16 chr15 51657404 51657468 -34038286 + L3 LINE CR1 1402 1468 -109 8670 170 11 10 chr15 51657560 51660218 -34035536 - L1PB1 LINE L1 -8 6859 4211 * 41683 35 4 1 chr15 51660211 51666359 -34029395 - L1PA3 LINE L1 -1 6154 1 2619 68 0 0 chr15 51666369 51666679 -34029075 - AluY SINE Alu 0 311 2 8456 172 57 22 chr15 51666684 51670610 -34025144 - L1PB1 LINE L1 -2647 4215 6 249 247 204 0 chr15 51670731 51670824 -34024930 + MER103 DNA DNA 3 114 -52 2238 98 20 0 chr15 51671490 51671786 -34023968 + AluSx SINE Alu 1 302 -10 291 175 0 0 chr15 51672215 51672272 -34023482 + L1MB7 LINE L1 6118 6174 -10 4592 201 88 78 chr15 51672562 51674882 -34020872 - L1M4 LINE L1 -729 5947 3431 1790 167 11 11 chr15 51674882 51675169 -34020585 - AluJb SINE Alu -25 287 1 4592 201 88 78 chr15 51675169 51675278 -34020476 - L1M4 LINE L1 -3245 3431 3325 270 208 14 0 chr15 51675278 51675350 -34020404 - L1M4 LINE L1 -3642 3002 2930 923 229 32 32 chr15 51675352 51675667 -34020087 + L1M4 LINE L1 2506 2820 -3326 1623 131 50 11 chr15 51675734 51675994 -34019760 + AluJb SINE Alu 9 278 -34 943 234 9 22 chr15 51675996 51676227 -34019527 + LTR40a LTR ERVL 292 519 0 832 222 40 70 chr15 51676228 51676557 -34019197 - L1M4 LINE L1 -5325 1221 903 267 288 8 17 chr15 51676632 51676750 -34019004 - L1M4 LINE L1 -5662 880 764 366 276 138 14 chr15 51678178 51678323 -34017431 - MIR SINE MIR -98 164 2 355 350 118 0 chr15 51678529 51678732 -34017022 + L2 LINE L2 2275 2501 -813 215 208 42 0 chr15 51678744 51678792 -34016962 + MIR SINE MIR 158 207 -55 484 258 146 6 chr15 51679145 51679323 -34016431 + MIR SINE MIR 57 259 -3 260 274 15 96 chr15 51679629 51679764 -34015990 + L3 LINE CR1 1345 1468 -109 248 287 0 0 chr15 51680426 51680513 -34015241 + T-rich Low_complexity Low_complexity 1 87 0 281 288 120 8 chr15 51682154 51682279 -34013475 + L2 LINE L2 2921 3059 -254 286 176 135 14 chr15 51682378 51682452 -34013302 - MER63 DNA MER1_type -300 761 679 251 83 0 0 chr15 51682447 51682483 -34013271 - MER63 DNA MER1_type -174 36 1 * 261 0 0 0 chr15 51682550 51682579 -34013175 + (T)n Simple_repeat Simple_repeat 1 29 0 255 301 21 0 chr15 51682626 51682719 -34013035 + L2 LINE L2 3219 3313 0 51 31 0 0 chr15 51682829 51682894 -34012860 + AT_rich Low_complexity Low_complexity 1 65 0 246 222 125 0 chr15 51683461 51683533 -34012221 - MER63 DNA MER1_type -302 760 680 216 0 0 0 chr15 51683633 51683657 -34012097 + (T)n Simple_repeat Simple_repeat 1 24 0 393 258 21 0 chr15 51683704 51683797 -34011957 + L2 LINE L2 3219 3313 0 337 338 125 22 chr15 51683803 51684114 -34011640 + L1MC/D LINE L1 4877 5219 -927 1943 125 14 4 chr15 51684182 51684506 -34011248 - AluSx SINE Alu 0 327 1 431 312 73 38 chr15 51684507 51684824 -34010930 + L1MC/D LINE L1 5437 5764 -2044 1819 156 53 26 chr15 51684836 51685175 -34010579 + MER7A DNA MER2_type 1 346 0 982 176 46 32 chr15 51685258 51685474 -34010280 + MER20 DNA MER1_type 1 219 0 227 351 53 0 chr15 51686282 51686376 -34009378 + MIR SINE MIR 104 202 -60 494 188 94 14 chr15 51686663 51686861 -34008893 + MER58 DNA MER1_type 2 2417 -3 421 277 85 15 chr15 51686861 51686991 -34008763 - MIR3 SINE MIR -51 157 19 181 313 0 31 chr15 51687516 51687580 -34008174 - L2 LINE L2 -75 3238 3177 2019 115 46 27 chr15 51687583 51687746 -34008008 - Tigger2 DNA MER2_type -72 2646 2488 1910 158 3 7 chr15 51687746 51688049 -34007705 + AluSx SINE Alu 1 302 -10 2019 115 46 27 chr15 51688049 51688258 -34007496 - Tigger2 DNA MER2_type -230 2488 2267 383 167 0 0 chr15 51688245 51688311 -34007443 + MER8 DNA MER2_type 174 239 0 * 2372 108 0 13 chr15 51690027 51690342 -34005412 + AluSx SINE Alu 1 311 -1 232 309 93 31 chr15 51690539 51690636 -34005118 + L2 LINE L2 3166 3268 -4 2375 75 0 23 chr15 51690934 51691239 -34004515 - AluY SINE Alu -13 298 1 312 325 25 0 chr15 51691493 51691573 -34004181 - L2 LINE L2 -2 3270 3189 391 315 45 9 chr15 51692252 51692363 -34003391 - L2 LINE L2 -19 3253 3139 440 296 106 16 chr15 51693360 51693549 -34002205 + MIR SINE MIR 54 259 -3 288 371 76 25 chr15 51693569 51693806 -34001948 + L2 LINE L2 2646 2894 -420 415 276 95 17 chr15 51694020 51694136 -34001618 + L2 LINE L2 3122 3246 -26 436 302 153 5 chr15 51695132 51695334 -34000420 + MIR SINE MIR 12 243 -19 189 147 0 0 chr15 51695530 51695564 -34000190 + (TA)n Simple_repeat Simple_repeat 1 34 0 481 179 152 21 chr15 51695574 51695719 -34000035 - MER112 DNA MER1_type 0 260 97 1352 219 33 123 chr15 51695823 51696578 -33999176 + L1MC4 LINE L1 7356 8042 0 1818 167 3 13 chr15 51696586 51696891 -33998863 + AluJb SINE Alu 1 302 -10 367 260 127 69 chr15 51697094 51697267 -33998487 + MIR SINE MIR 8 190 -72 189 352 86 19 chr15 51697364 51697469 -33998285 + MER5B DNA MER1_type 7 118 -60 * 233 260 91 13 chr15 51697464 51697541 -33998213 - L2 LINE L2 -44 3228 3146 516 304 69 49 chr15 51697757 51698065 -33997689 + MARNA DNA Mariner 26 348 -238 2240 96 0 0 chr15 51698065 51698372 -33997382 + AluSq SINE Alu 1 307 0 516 304 69 49 chr15 51698372 51698509 -33997245 + MARNA DNA Mariner 348 481 -105 29 0 0 0 chr15 51698718 51698747 -33997007 + AT_rich Low_complexity Low_complexity 1 29 0 951 188 6 0 chr15 51699402 51699562 -33996192 + FRAM SINE Alu 1 161 -5 2150 125 0 0 chr15 51701575 51701864 -33993890 + AluSx SINE Alu 1 289 -23 979 128 0 0 chr15 51702164 51702297 -33993457 + AluJb SINE Alu 1 133 -179 1193 178 0 0 chr15 51702326 51702511 -33993243 + AluJb SINE Alu 120 304 -8 264 273 141 10 chr15 51702770 51702869 -33992885 - L2 LINE L2 0 3313 3202 361 207 37 37 chr15 51703775 51703857 -33991897 + MIR3 SINE MIR 104 185 -23 1618 177 57 7 chr15 51704728 51705011 -33990743 - AluJb SINE Alu -15 297 1 413 252 0 0 chr15 51705884 51705987 -33989767 - L1MC4 LINE L1 -9 8033 7931 2009 212 212 12 chr15 51705992 51706658 -33989096 - L1MC4 LINE L1 -500 7542 6744 235 250 0 0 chr15 51706719 51706775 -33988979 - L1MC3 LINE L1 -1043 6742 6687 * 3615 209 82 16 chr15 51706774 51708149 -33987605 + L1ME1 LINE L1 4232 5706 -458 307 210 50 20 chr15 51708249 51708349 -33987405 + L1ME1 LINE L1 6054 6156 -10 2353 95 0 7 chr15 51708357 51708662 -33987092 - AluSx SINE Alu -9 303 1 34 0 0 0 chr15 51708695 51708729 -33987025 + AT_rich Low_complexity Low_complexity 1 34 0 1936 167 3 3 chr15 51709071 51709370 -33986384 + AluJb SINE Alu 1 299 -13 383 254 87 22 chr15 51709841 51709979 -33985775 + L2 LINE L2 2238 2384 -930 331 221 91 0 chr15 51709981 51710058 -33985696 - L2 LINE L2 -6 3307 3224 725 333 94 3 chr15 51710355 51710718 -33985036 - L2 LINE L2 -789 2525 2130 2224 113 7 0 chr15 51712144 51712444 -33983310 + AluY SINE Alu 1 302 -9 3588 21 2 0 chr15 51712556 51712990 -33982764 - L1PA4 LINE L1 0 6155 5721 2221 119 3 13 chr15 51714517 51714827 -33980927 - AluSx SINE Alu -5 307 1 182 300 62 38 chr15 51715851 51715931 -33979823 - MIR SINE MIR -102 160 79 2354 110 0 0 chr15 51716793 51717094 -33978660 + AluSx SINE Alu 1 301 -11 303 344 97 19 chr15 51717193 51717347 -33978407 + MIR SINE MIR 85 250 -12 180 77 0 0 chr15 51719957 51719983 -33975771 + (T)n Simple_repeat Simple_repeat 1 26 0 2131 134 0 16 chr15 51720538 51720852 -33974902 + AluJb SINE Alu 1 309 -3 783 250 91 13 chr15 51722121 51722353 -33973401 - MIR SINE MIR -10 252 3 304 308 87 46 chr15 51723863 51724058 -33971696 - MIR SINE MIR -49 213 11 2470 82 0 25 chr15 51724500 51724818 -33970936 - AluSx SINE Alu 0 312 3 351 323 39 13 chr15 51724866 51725021 -33970733 - L2 LINE L2 -182 3090 2932 312 246 8 54 chr15 51725314 51725444 -33970310 + AluSg/x SINE Alu 138 261 -41 405 138 15 0 chr15 51725632 51725697 -33970057 + MLT1B LTR MaLR 1 66 -401 2398 94 0 0 chr15 51725802 51726099 -33969655 + AluSg1 SINE Alu 1 297 -12 670 118 9 9 chr15 51726241 51726351 -33969403 + MLT1B LTR MaLR 63 172 -218 2422 92 0 3 chr15 51726356 51726661 -33969093 + AluY SINE Alu 1 304 -7 1140 218 76 14 chr15 51726662 51727065 -33968689 + L1ME1 LINE L1 5195 5613 -553 514 140 29 4 chr15 51727065 51727273 -33968481 + AluSg SINE Alu 1 301 -8 25 0 0 0 chr15 51727273 51727298 -33968456 + AT_rich Low_complexity Low_complexity 1 25 0 720 129 51 56 chr15 51727350 51727528 -33968226 + L1MA8 LINE L1 6112 6288 -3 1081 261 114 2 chr15 51727529 51727961 -33967793 + L1ME1 LINE L1 5647 6166 0 2330 110 3 3 chr15 51727966 51728276 -33967478 + AluSg SINE Alu 1 310 0 307 274 53 0 chr15 51728285 51728380 -33967374 + L1ME3A LINE L1 4383 4482 -1664 254 172 188 16 chr15 51728434 51728498 -33967256 + MLT1J1 LTR MaLR 76 150 -296 1202 299 99 25 chr15 51728706 51728912 -33966842 + L1ME3A LINE L1 4469 4658 -1512 2354 110 0 7 chr15 51728912 51729221 -33966533 + AluSq SINE Alu 1 307 -6 1202 299 99 25 chr15 51729221 51730378 -33965376 + L1ME3A LINE L1 4658 5938 -232 606 250 79 0 chr15 51730405 51730557 -33965197 + MER97b DNA MER1_type? 21 184 -869 769 213 18 0 chr15 51731658 51731822 -33963932 - MER97a DNA MER1_type? -719 175 9 26 0 0 0 chr15 51733211 51733237 -33962517 + AT_rich Low_complexity Low_complexity 1 26 0 908 201 62 53 chr15 51734368 51734612 -33961142 - MIR SINE MIR -14 248 3 581 264 101 23 chr15 51734656 51734881 -33960873 + MIR SINE MIR 20 248 -14 263 102 0 20 chr15 51735245 51735294 -33960460 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 219 250 21 0 chr15 51735771 51735819 -33959935 + GA-rich Low_complexity Low_complexity 2 50 0 1396 207 34 14 chr15 51737809 51738167 -33957587 + MLT1A1 LTR MaLR 1 365 0 1987 179 0 0 chr15 51740101 51740438 -33955316 - AluJb SINE Alu 0 312 1 2397 96 0 13 chr15 51740448 51740762 -33954992 - AluSx SINE Alu -2 310 1 189 167 242 15 chr15 51741331 51741397 -33954357 - L2 LINE L2 -31 3282 3202 220 300 100 0 chr15 51741794 51741894 -33953860 - L2 LINE L2 -560 2754 2645 192 298 33 16 chr15 51741949 51742070 -33953684 - MIR3 SINE MIR -50 158 36 214 263 38 0 chr15 51742171 51742251 -33953503 - L2 LINE L2 -807 2507 2425 848 190 183 56 chr15 51744830 51745098 -33950656 - AluJo SINE Alu 0 302 1 471 253 157 20 chr15 51746145 51746343 -33949411 + MIR SINE MIR 25 249 -13 322 309 152 6 chr15 51747145 51747310 -33948444 - MIR SINE MIR -73 189 1 235 354 0 11 chr15 51747310 51747420 -33948334 - MIR SINE MIR -75 133 74 193 225 50 0 chr15 51747855 51747895 -33947859 + MIR SINE MIR 84 125 -137 1143 231 41 36 chr15 51748187 51748550 -33947204 + MLT1A1 LTR MaLR 1 365 0 748 247 21 5 chr15 51748695 51748881 -33946873 - MER115 DNA AcHobo 0 693 505 382 306 203 11 chr15 51748946 51749207 -33946547 - MER115 DNA AcHobo -325 368 58 571 295 118 42 chr15 51749958 51750626 -33945128 + L2 LINE L2 2444 3172 -141 314 242 210 8 chr15 51751809 51751933 -33943821 + MIR SINE MIR 108 256 -6 217 296 28 0 chr15 51752307 51752378 -33943376 - MIR SINE MIR -55 153 81 188 244 0 0 chr15 51754297 51754342 -33941412 + MIR SINE MIR 108 152 -110 306 0 0 0 chr15 51754423 51754457 -33941297 + (TG)n Simple_repeat Simple_repeat 2 35 0 31 0 0 0 chr15 51754457 51754488 -33941266 + AT_rich Low_complexity Low_complexity 1 31 0 2411 86 0 10 chr15 51754494 51754795 -33940959 - AluSq SINE Alu -15 298 1 406 247 64 3 chr15 51754843 51754968 -33940786 - MIR SINE MIR -35 173 45 287 227 11 57 chr15 51755016 51755104 -33940650 + MIR SINE MIR 33 116 -92 750 279 49 11 chr15 51755827 51756114 -33939640 + LTR16C LTR ERVL 192 489 -2 535 221 102 82 chr15 51756115 51756359 -33939395 + MER102a DNA MER1_type 81 329 -1 494 309 85 38 chr15 51756359 51756595 -33939159 + MIR SINE MIR 1 247 -15 425 264 27 0 chr15 51757653 51757763 -33937991 + MIR SINE MIR 33 145 -63 464 335 110 13 chr15 51759548 51759775 -33935979 + MIR SINE MIR 1 249 -13 464 235 147 35 chr15 51760508 51760678 -33935076 - MIR SINE MIR -54 208 20 198 293 0 0 chr15 51761702 51761784 -33933970 + (CA)n Simple_repeat Simple_repeat 1 82 0 882 223 80 34 chr15 51762618 51762856 -33932898 - MIR SINE MIR -1 261 13 824 327 163 40 chr15 51762885 51764313 -33931441 + L2 LINE L2 215 1467 -1805 304 27 0 0 chr15 51764313 51764350 -33931404 - U2 snRNA snRNA -151 37 1 824 327 163 40 chr15 51764350 51765499 -33930255 + L2 LINE L2 1467 3168 -104 543 69 0 0 chr15 51766343 51766415 -33929339 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 287 319 35 14 chr15 51766452 51766596 -33929158 + L1ME4a LINE L1 5970 6116 -5 469 216 162 20 chr15 51767760 51767908 -33927846 - MER5A DNA MER1_type -8 181 13 490 262 48 0 chr15 51767952 51768078 -33927676 + MIR SINE MIR 80 211 -51 303 104 0 0 chr15 51768108 51768156 -33927598 + (CAT)n Simple_repeat Simple_repeat 1 48 0 466 256 8 38 chr15 51768574 51768717 -33927037 + MIR3 SINE MIR 32 171 -37 189 0 0 0 chr15 51769113 51769134 -33926620 + (CA)n Simple_repeat Simple_repeat 1 21 0 1857 137 0 78 chr15 51769531 51769866 -33925888 - AluJb SINE Alu -3 309 1 200 172 121 17 chr15 51770101 51770159 -33925595 + MIR3 SINE MIR 138 201 -7 271 258 33 92 chr15 51770498 51770618 -33925136 - MIR3 SINE MIR -38 170 58 281 102 41 0 chr15 51772145 51772194 -33923560 + L2 LINE L2 3004 3054 -218 335 333 58 0 chr15 51773657 51773795 -33921959 + MIR3 SINE MIR 47 192 -16 492 282 74 55 chr15 51773937 51774139 -33921615 + MIR SINE MIR 54 259 -3 742 263 31 84 chr15 51774184 51774541 -33921213 - MER102b DNA MER1_type -3 338 1 419 223 176 47 chr15 51775733 51775881 -33919873 + MER5A DNA MER1_type 9 175 -14 240 284 27 14 chr15 51777212 51777286 -33918468 - MIR SINE MIR -115 147 73 2301 66 7 10 chr15 51778616 51778917 -33916837 - AluY SINE Alu -11 300 1 457 246 87 32 chr15 51778962 51779088 -33916666 - L3 LINE CR1 -68 1509 1377 478 278 227 47 chr15 51779337 51779765 -33915989 + L2 LINE L2 2804 3308 -5 991 281 159 16 chr15 51780627 51781079 -33914675 - LTR33 LTR ERVL -2 519 3 2419 91 0 7 chr15 51781941 51782249 -33913505 - AluSx SINE Alu -6 306 1 1966 115 0 0 chr15 51782491 51782744 -33913010 - AluSx SINE Alu -22 290 38 2673 333 84 27 chr15 51783076 51784679 -33911075 + L2 LINE L2 1348 3062 -251 208 233 0 23 chr15 51784791 51784834 -33910920 + L2 LINE L2 3209 3250 -22 1841 100 8 0 chr15 51784961 51785202 -33910552 + AluSq SINE Alu 1 243 -70 1270 121 16 0 chr15 51785302 51785484 -33910270 + AluSq SINE Alu 119 303 -10 216 0 0 0 chr15 51785735 51785759 -33909995 + (TTG)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 51787946 51787968 -33907786 + AT_rich Low_complexity Low_complexity 1 22 0 1790 190 0 23 chr15 51787976 51788286 -33907468 + AluSx SINE Alu 1 303 -9 686 141 5 151 chr15 51788286 51788492 -33907262 + AluJo/FRAM SINE Alu 137 312 0 2227 94 26 19 chr15 51788540 51788848 -33906906 - AluSx SINE Alu -2 310 1 355 144 130 62 chr15 51791355 51791501 -33904253 - L1ME4a LINE L1 -20 6101 5946 360 115 87 125 chr15 51793714 51793818 -33901936 - Tigger7 DNA MER2_type 0 2487 2388 * 1400 176 43 0 chr15 51793815 51794070 -33901684 - Tigger7 DNA MER2_type -284 266 1 420 304 251 0 chr15 51794291 51794482 -33901272 + MIR SINE MIR 9 247 -15 736 226 131 5 chr15 51794516 51794715 -33901039 - MIR SINE MIR -37 225 2 296 228 0 13 chr15 51794734 51794813 -33900941 - L3 LINE CR1 -310 1267 1190 5929 157 114 20 chr15 51796256 51796466 -33899288 - Charlie1a DNA MER1_type -1306 1455 1266 2399 99 0 0 chr15 51796466 51796770 -33898984 - AluY SINE Alu -7 304 1 5929 157 114 20 chr15 51796770 51797533 -33898221 - Charlie1a DNA MER1_type -1495 1266 321 2339 75 3 3 chr15 51797533 51797825 -33897929 + AluSq SINE Alu 1 292 -21 5929 157 114 20 chr15 51797825 51798180 -33897574 - Charlie1a DNA MER1_type -2440 321 1 228 313 0 15 chr15 51798667 51798734 -33897020 - L2 LINE L2 0 3313 3248 2171 125 0 3 chr15 51798759 51799054 -33896700 - AluSx SINE Alu -18 294 1 33 0 0 0 chr15 51800426 51800459 -33895295 + AT_rich Low_complexity Low_complexity 1 33 0 222 331 149 23 chr15 51803173 51803348 -33892406 + L2 LINE L2 3075 3271 -1 2419 90 10 3 chr15 51803547 51803857 -33891897 + AluSq SINE Alu 1 312 -1 2314 109 0 3 chr15 51804634 51804945 -33890809 - AluSg SINE Alu 0 310 1 279 265 71 20 chr15 51805417 51805515 -33890239 + L2 LINE L2 2430 2532 -782 235 316 105 0 chr15 51805940 51806035 -33889719 + L2 LINE L2 3118 3222 -50 180 394 68 15 chr15 51806065 51806197 -33889557 - L2 LINE L2 -122 3150 3012 200 214 24 0 chr15 51806844 51806886 -33888868 - L2 LINE L2 -9 3304 3262 3949 208 55 49 chr15 51807339 51807814 -33887940 - L1M4 LINE L1 -2402 3980 3509 248 0 31 0 chr15 51807814 51807846 -33887908 + (TC)n Simple_repeat Simple_repeat 2 34 0 3949 208 55 49 chr15 51807846 51808182 -33887572 - L1M4 LINE L1 -2873 3509 3177 2254 120 0 3 chr15 51808182 51808491 -33887263 - AluSx SINE Alu -4 308 1 3949 208 55 49 chr15 51808491 51808934 -33886820 - L1M4 LINE L1 -3205 3177 2717 243 88 0 0 chr15 51808935 51808969 -33886785 + (TG)n Simple_repeat Simple_repeat 2 35 0 578 233 0 7 chr15 51808977 51809123 -33886631 + L1 LINE L1 3457 3601 -2545 267 31 0 0 chr15 51809126 51809158 -33886596 + (TA)n Simple_repeat Simple_repeat 1 32 0 704 197 0 31 chr15 51809159 51809286 -33886468 - FLAM_A SINE Alu -13 129 7 1553 201 16 6 chr15 51809298 51809690 -33886064 - L1M4 LINE L1 -3668 2714 2318 460 119 0 0 chr15 51809691 51809758 -33885996 - Alu SINE Alu -11 301 235 1090 73 44 0 chr15 51809758 51809894 -33885860 - AluSq/x SINE Alu -171 142 1 2214 95 0 20 chr15 51810468 51810764 -33884990 - AluSc SINE Alu -19 290 1 387 246 116 7 chr15 51810863 51811001 -33884753 + MIR SINE MIR 110 262 0 185 278 37 19 chr15 51811406 51811460 -33884294 + MIR3 SINE MIR 106 160 -48 1369 204 14 3 chr15 51811474 51811763 -33883991 - L1MB7 LINE L1 -16 6168 5877 2918 7 0 0 chr15 51812776 51813086 -33882668 - AluYa5 SINE Alu -1 310 1 320 302 158 15 chr15 51813089 51813291 -33882463 + L2 LINE L2 1991 2221 -1093 2560 46 0 13 chr15 51813361 51813615 -33882139 - SVA Other Other -1 1385 1088 334 62 21 0 chr15 51813615 51813663 -33882091 - LTR5 LTR ERVK -771 198 150 9623 82 5 5 chr15 51813763 51815088 -33880666 + L1P LINE L1 3617 4940 -1206 1518 181 0 8 chr15 51815197 51815462 -33880292 + AluJb SINE Alu 50 312 0 1783 125 44 4 chr15 51815484 51815640 -33880114 - AluY SINE Alu -23 288 115 221 0 0 33 chr15 51815640 51815670 -33880084 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1783 125 44 4 chr15 51815670 51815785 -33879969 - AluY SINE Alu -196 115 6 6495 147 18 8 chr15 51815795 51816935 -33878819 - L1 LINE L1 -1127 5019 3868 206 301 38 75 chr15 51819285 51819418 -33876336 + L3b LINE CR1 1230 1357 -226 254 354 69 14 chr15 51820007 51820151 -33875603 - L2 LINE L2 0 3272 3121 2285 139 11 3 chr15 51820249 51820609 -33875145 - L1MB5 LINE L1 -84 6090 5728 264 30 0 0 chr15 51821748 51821781 -33873973 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2212 105 0 0 chr15 51821785 51822062 -33873692 - AluSx SINE Alu -33 279 3 1206 30 0 7 chr15 51822073 51822208 -33873546 - AluYb8 SINE Alu -164 154 21 232 222 49 148 chr15 51822260 51822422 -33873332 - MER5A DNA MER1_type -43 146 1 1418 296 150 21 chr15 51822585 51823601 -33872153 + L2 LINE L2 1728 2874 -440 465 145 50 38 chr15 51824406 51824529 -33871225 + MLT1D LTR MaLR 1 127 -378 2164 166 46 26 chr15 51824649 51825066 -33870688 + MLT1D LTR MaLR 81 505 0 2273 80 0 7 chr15 51825872 51826161 -33869593 - AluY SINE Alu -8 303 17 672 103 0 0 chr15 51826261 51826348 -33869406 - AluS SINE Alu -224 88 2 303 132 137 0 chr15 51826349 51826444 -33869310 + L1M4 LINE L1 5592 5718 -495 1196 205 36 67 chr15 51826444 51826520 -33869234 - MER2 DNA MER2_type 0 345 268 2259 98 0 0 chr15 51826520 51826805 -33868949 + AluSc SINE Alu 1 285 -24 1196 205 36 67 chr15 51826805 51827084 -33868670 - MER2 DNA MER2_type -77 268 1 465 158 0 0 chr15 51827100 51827176 -33868578 + L1M4 LINE L1 5729 5804 -370 2812 351 19 19 chr15 51827327 51828592 -33867162 - ERVL LTR ERVL -2069 3695 2431 2481 75 0 0 chr15 51829774 51830079 -33865675 + AluSg SINE Alu 1 305 -5 1022 231 70 31 chr15 51830290 51830636 -33865118 + HAL1 LINE L1 796 1160 -1347 2187 103 3 7 chr15 51830636 51830928 -33864826 + AluSq SINE Alu 1 291 -22 1022 231 70 31 chr15 51830928 51830966 -33864788 + HAL1 LINE L1 1160 1195 -1312 369 109 0 0 chr15 51830967 51831022 -33864732 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 877 226 139 31 chr15 51831163 51831214 -33864540 - L1ME3A LINE L1 -8 6162 6118 3371 171 21 58 chr15 51831214 51831641 -33864113 + MER82 DNA MER2_type 5 399 -254 2320 58 12 67 chr15 51831641 51831970 -33863784 + AluY SINE Alu 1 311 0 3371 171 21 58 chr15 51831970 51832216 -33863538 + MER82 DNA MER2_type 399 653 0 877 226 139 31 chr15 51832216 51832451 -33863303 - L1ME3A LINE L1 -52 6118 5845 630 171 77 0 chr15 51833341 51833458 -33862296 + FLAM_C SINE Alu 10 135 -8 1421 223 33 13 chr15 51833670 51833971 -33861783 - LTR16C LTR ERVL 0 491 185 1750 205 85 61 chr15 51833978 51834680 -33861074 + L1ME LINE L1 4922 5628 -536 2366 90 0 0 chr15 51834680 51834969 -33860785 - AluSx SINE Alu -23 289 1 1750 205 85 61 chr15 51834969 51835165 -33860589 + L1ME LINE L1 5628 5818 -346 643 146 20 20 chr15 51835265 51835416 -33860338 + GA-rich Low_complexity Low_complexity 3 153 0 1748 203 22 6 chr15 51835478 51835837 -33859917 - MLT1A1 LTR MaLR 0 365 1 202 276 0 17 chr15 51837216 51837274 -33858480 + CT-rich Low_complexity Low_complexity 4 60 0 425 86 0 0 chr15 51837928 51837986 -33857768 + L1PA6 LINE L1 6092 6149 -5 203 0 0 36 chr15 51837995 51838023 -33857731 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 608 328 27 15 chr15 51838023 51838352 -33857402 - L2 LINE L2 -1235 2079 1747 21 0 0 0 chr15 51839102 51839123 -33856631 + AT_rich Low_complexity Low_complexity 1 21 0 571 235 117 6 chr15 51839642 51839804 -33855950 - MER5A DNA MER1_type -2 187 8 256 254 63 0 chr15 51840378 51840441 -33855313 + L2 LINE L2 3203 3269 -3 395 320 58 6 chr15 51840512 51840684 -33855070 - MIR SINE MIR -76 186 6 2696 232 43 41 chr15 51840830 51841628 -33854126 - L1MEc LINE L1 -5563 833 35 194 299 45 0 chr15 51841941 51842008 -33853746 + MER5A DNA MER1_type 50 119 -70 269 270 122 28 chr15 51842153 51842311 -33853443 - MIR SINE MIR -65 143 17 940 266 162 29 chr15 51842432 51842876 -33852878 - MLT1J LTR MaLR -8 503 1 237 272 161 49 chr15 51843036 51843151 -33852603 - MIR SINE MIR -35 227 88 2075 135 6 13 chr15 51843151 51843462 -33852292 - AluSx SINE Alu -3 309 1 237 272 161 49 chr15 51843462 51843508 -33852246 - MIR SINE MIR -174 88 48 903 217 214 40 chr15 51843537 51843883 -33851871 + MLT1I LTR MaLR 2 407 -2 204 274 32 0 chr15 51844254 51844316 -33851438 - L2 LINE L2 0 3313 3250 2317 111 0 0 chr15 51845854 51846160 -33849594 - AluSg SINE Alu -4 306 1 29 84 0 0 chr15 51846264 51846335 -33849419 + AT_rich Low_complexity Low_complexity 1 71 0 931 182 0 0 chr15 51846408 51846562 -33849192 - FRAM SINE Alu 0 176 23 1179 200 127 39 chr15 51846677 51847271 -33848483 - L1MC5 LINE L1 -162 7799 7001 1959 133 49 0 chr15 51847271 51847556 -33848198 + AluSx SINE Alu 1 299 -13 1179 200 127 39 chr15 51847556 51847576 -33848178 - L1MC5 LINE L1 -960 7001 6984 439 294 55 64 chr15 51847591 51847917 -33847837 - HAL1 LINE L1 -1043 1464 1142 34 65 0 0 chr15 51848035 51848097 -33847657 + AT_rich Low_complexity Low_complexity 1 62 0 2017 138 0 0 chr15 51848613 51848924 -33846830 - AluSx SINE Alu 0 311 1 271 279 78 28 chr15 51849128 51849307 -33846447 + L2 LINE L2 2957 3144 -169 33599 93 14 21 chr15 51849410 51855429 -33840325 + L1PA7 LINE L1 407 6469 0 270 297 115 39 chr15 51855600 51855886 -33839868 - L1ME3A LINE L1 -230 5940 5633 542 161 0 11 chr15 51856153 51856240 -33839514 + AluSc SINE Alu 11 96 -213 256 232 0 0 chr15 51856644 51856700 -33839054 + MER94 DNA DNA 79 134 0 383 240 138 51 chr15 51857742 51857996 -33837758 + L1ME4a LINE L1 5790 6065 -56 692 193 95 116 chr15 51858396 51858934 -33836820 - MER4C LTR ERV1 0 695 1 234 217 0 0 chr15 51859651 51859697 -33836057 + L2 LINE L2 3268 3313 0 2343 116 0 0 chr15 51859897 51860207 -33835547 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr15 51860207 51860233 -33835521 + AT_rich Low_complexity Low_complexity 1 26 0 232 254 138 23 chr15 51860250 51860380 -33835374 - MIR3 SINE MIR -34 174 30 220 322 0 0 chr15 51860504 51860563 -33835191 - L2 LINE L2 -28 3244 3186 286 229 43 0 chr15 51861695 51861765 -33833989 + Charlie4 DNA MER1_type 1888 1960 -1 404 212 240 0 chr15 51862107 51862253 -33833501 + MIR SINE MIR 81 261 -1 297 252 183 9 chr15 51862269 51862384 -33833370 - L3 LINE CR1 -69 1508 1374 870 253 164 53 chr15 51862387 51862912 -33832842 - MLT1K LTR MaLR -4 584 2 335 283 9 18 chr15 51863234 51863347 -33832407 + GA-rich Low_complexity Low_complexity 1 112 0 2229 121 0 9 chr15 51863425 51863740 -33832014 + AluSx SINE Alu 1 312 0 2299 114 0 0 chr15 51864444 51864743 -33831011 - AluSx SINE Alu -13 299 1 2293 104 0 0 chr15 51865358 51865667 -33830087 - AluSq SINE Alu -4 309 1 468 319 0 0 chr15 51865890 51866009 -33829745 + L2 LINE L2 3185 3303 -10 422 271 136 40 chr15 51866358 51866535 -33829219 - MIR SINE MIR -21 241 48 223 336 47 47 chr15 51867100 51867249 -33828505 + L2 LINE L2 3165 3313 0 444 217 35 101 chr15 51867444 51867519 -33828235 + MIR SINE MIR 43 121 -141 1753 128 7 4 chr15 51867519 51867828 -33827926 - AluSx SINE Alu 0 310 1 444 217 35 101 chr15 51867828 51867976 -33827778 + MIR SINE MIR 121 256 -6 210 304 170 16 chr15 51868097 51868350 -33827404 + L3 LINE CR1 1147 1438 -139 540 303 0 7 chr15 51868999 51869154 -33826600 - L2 LINE L2 0 3313 3160 407 260 29 0 chr15 51869203 51869307 -33826447 + MIR SINE MIR 48 154 -108 9749 111 22 3 chr15 51869315 51870736 -33825018 - Tigger1 DNA MER2_type 0 2418 972 4864 133 19 6 chr15 51870740 51871469 -33824285 - Tigger1 DNA MER2_type -1679 739 1 397 244 0 0 chr15 51871469 51871551 -33824203 + MIR SINE MIR 156 237 -25 2179 108 0 0 chr15 51871777 51872073 -33823681 + AluSx SINE Alu 1 296 -16 1670 278 123 22 chr15 51872078 51872840 -33822914 - L2 LINE L2 -364 2950 2069 847 116 4 2 chr15 51872842 51873109 -33822645 + AluSx SINE Alu 2 324 0 2833 109 23 2 chr15 51873120 51873513 -33822241 + L1P3 LINE L1 10 410 -6051 21 0 0 0 chr15 51873855 51873876 -33821878 + GC_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr15 51874391 51874437 -33821317 + GC_rich Low_complexity Low_complexity 1 46 0 319 250 0 0 chr15 51877283 51877359 -33818395 - MER116 DNA Mariner -4 76 1 416 271 7 64 chr15 51877360 51877500 -33818254 - MIR SINE MIR -109 153 22 477 0 0 0 chr15 51878173 51878226 -33817528 + (CA)n Simple_repeat Simple_repeat 2 54 0 412 294 75 7 chr15 51878538 51878684 -33817070 + MIR SINE MIR 98 253 -9 1394 135 40 5 chr15 51878918 51879140 -33816614 - MER30 DNA MER1_type 0 230 1 807 201 0 0 chr15 51879454 51879628 -33816126 + GA-rich Low_complexity Low_complexity 3 176 0 405 39 0 0 chr15 51879953 51880004 -33815750 + (TG)n Simple_repeat Simple_repeat 1 51 0 225 261 22 33 chr15 51881642 51881734 -33814020 - L2 LINE L2 -41 3231 3141 442 283 0 22 chr15 51882163 51882343 -33813411 + (CAGAGA)n Simple_repeat Simple_repeat 4 179 0 489 269 0 0 chr15 51882394 51882930 -33812824 + (CAGAGA)n Simple_repeat Simple_repeat 1 536 0 532 268 0 0 chr15 51882970 51883326 -33812428 + (CAGAGA)n Simple_repeat Simple_repeat 1 356 0 231 274 0 0 chr15 51883342 51883517 -33812237 + (CAGAGA)n Simple_repeat Simple_repeat 5 179 0 465 277 0 0 chr15 51883570 51884022 -33811732 + (CAGAGA)n Simple_repeat Simple_repeat 1 452 0 230 206 118 10 chr15 51884199 51884301 -33811453 + MIR SINE MIR 18 130 -78 866 258 43 4 chr15 51884550 51884783 -33810971 - MIR SINE MIR -5 257 16 199 328 156 8 chr15 51885119 51885241 -33810513 + L2 LINE L2 389 528 -2786 2097 110 0 10 chr15 51885244 51885553 -33810201 + AluSx SINE Alu 1 306 -6 1051 204 108 34 chr15 51885833 51886301 -33809453 + MER67A LTR ERV1 1 661 0 317 320 164 29 chr15 51886311 51886586 -33809168 + L2 LINE L2 975 1286 -2028 1162 220 164 12 chr15 51886613 51886949 -33808805 - MSTD LTR MaLR 0 396 10 946 209 71 6 chr15 51887054 51887236 -33808518 - MER21B LTR ERV1 -313 550 357 628 179 39 83 chr15 51887257 51887413 -33808341 - MER21B LTR ERV1 -615 248 100 2180 109 3 0 chr15 51887433 51887736 -33808018 + AluSx SINE Alu 2 305 -7 572 179 26 43 chr15 51887741 51887858 -33807896 + FLAM_A SINE Alu 1 115 -18 493 245 0 0 chr15 51887927 51888021 -33807733 - MER21B LTR ERV1 -769 94 1 2111 139 35 3 chr15 51888021 51888366 -33807388 - L1M4 LINE L1 -398 5786 5431 478 168 53 61 chr15 51888366 51888497 -33807257 + MER58C DNA MER1_type 76 205 -10 * 2833 242 33 31 chr15 51888493 51888674 -33807080 - Zaphod DNA AcHobo -3166 865 686 2105 122 0 0 chr15 51888674 51888968 -33806786 - AluSx SINE Alu -18 294 1 2833 242 33 31 chr15 51888968 51889567 -33806187 - Zaphod DNA AcHobo -3345 686 83 801 157 0 8 chr15 51889610 51889731 -33806023 + FLAM_A SINE Alu 1 120 -13 381 207 54 45 chr15 51889731 51889836 -33805918 - L1MCa LINE L1 -4338 2088 1983 180 70 70 0 chr15 51889836 51889879 -33805875 + (TA)n Simple_repeat Simple_repeat 2 47 0 554 207 56 95 chr15 51889942 51889996 -33805758 + L1MC5 LINE L1 7639 7694 -267 2209 95 3 0 chr15 51889996 51890292 -33805462 - AluSp SINE Alu -16 297 1 554 207 56 95 chr15 51890292 51890542 -33805212 + L1MC5 LINE L1 7694 7931 -30 188 172 109 62 chr15 51890670 51890734 -33805020 + L3 LINE CR1 1347 1413 -164 1431 136 0 0 chr15 51890950 51891163 -33804591 + AluSg/x SINE Alu 83 295 -17 3547 111 24 0 chr15 51891248 51891788 -33803966 - L1MA2 LINE L1 0 6304 5752 22 35 0 0 chr15 51891791 51891820 -33803934 + AT_rich Low_complexity Low_complexity 1 29 0 338 243 169 19 chr15 51891951 51892278 -33803476 - L1ME3A LINE L1 -214 5956 5558 823 283 106 35 chr15 51892301 51892597 -33803157 - L1ME3A LINE L1 -682 5480 5207 2073 113 3 0 chr15 51892597 51892890 -33802864 - AluSx SINE Alu -18 294 1 823 283 106 35 chr15 51892890 51893809 -33801945 - L1ME3A LINE L1 -955 5207 4177 2048 109 0 3 chr15 51893867 51894170 -33801584 - AluSq SINE Alu 0 302 1 207 0 0 0 chr15 51894174 51894197 -33801557 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 304 195 230 0 chr15 51894305 51894392 -33801362 - L1ME3A LINE L1 -2177 3969 3863 227 286 26 13 chr15 51896103 51896180 -33799574 + LTR33A LTR ERVL 446 523 0 182 330 114 11 chr15 51896359 51896447 -33799307 - MIR SINE MIR 0 262 166 317 287 118 26 chr15 51896454 51896649 -33799105 - MLT1L LTR MaLR 0 615 403 270 56 0 0 chr15 51896651 51896687 -33799067 + (AATAG)n Simple_repeat Simple_repeat 5 40 0 2002 135 0 31 chr15 51896763 51897081 -33798673 + AluSx SINE Alu 1 308 -4 264 323 94 0 chr15 51897296 51897392 -33798362 - MIR SINE MIR -67 195 91 1582 245 104 65 chr15 51898033 51899552 -33796202 + L1ME3A LINE L1 4459 6052 -118 1764 105 0 99 chr15 51899552 51899901 -33795853 + AluSg SINE Alu 1 318 0 1582 245 104 65 chr15 51899901 51900024 -33795730 + L1ME3A LINE L1 6052 6169 -1 379 302 58 29 chr15 51900108 51900247 -33795507 - MIR3 SINE MIR -62 146 4 188 345 35 35 chr15 51900752 51900865 -33794889 - L2 LINE L2 -213 3059 2947 201 320 27 27 chr15 51901746 51901821 -33793933 + L2 LINE L2 3150 3224 -48 2269 106 0 0 chr15 51902281 51902584 -33793170 - AluSx SINE Alu -5 307 5 1757 154 0 3 chr15 51902966 51903258 -33792496 - AluJb SINE Alu -21 291 1 379 290 98 51 chr15 51903279 51903456 -33792298 - HERV16 LTR ERVL -4705 291 95 2256 87 0 6 chr15 51903456 51903767 -33791987 - AluY SINE Alu 0 311 3 379 290 98 51 chr15 51903767 51903865 -33791889 - HERV16 LTR ERVL -4901 95 3 466 319 0 0 chr15 51903877 51904018 -33791736 - LTR16C LTR ERVL -33 458 318 361 311 55 71 chr15 51904215 51904305 -33791449 + L1MEd LINE L1 371 461 -5658 312 70 0 0 chr15 51904305 51904348 -33791406 + (TG)n Simple_repeat Simple_repeat 2 44 0 361 311 55 71 chr15 51904348 51904495 -33791259 + L1MEd LINE L1 461 604 -5515 324 259 125 56 chr15 51904507 51904594 -33791160 + L1ME4a LINE L1 5718 5798 -323 913 191 10 24 chr15 51904594 51904803 -33790951 + L1MB2 LINE L1 5965 6170 -1 324 259 125 56 chr15 51904803 51904934 -33790820 + L1ME4a LINE L1 5798 5919 -202 264 59 59 0 chr15 51904934 51904985 -33790769 + (TA)n Simple_repeat Simple_repeat 1 54 0 324 259 125 56 chr15 51904985 51905085 -33790669 + L1ME4a LINE L1 5919 6059 -62 1020 294 71 17 chr15 51905104 51905512 -33790242 - MLT1L LTR MaLR 0 615 186 198 108 58 42 chr15 51905811 51905931 -33789823 + (TA)n Simple_repeat Simple_repeat 1 122 0 197 326 137 23 chr15 51906533 51906708 -33789046 + MIR SINE MIR 64 258 -4 456 298 92 0 chr15 51907200 51907341 -33788413 - MIR SINE MIR -62 200 47 287 325 172 0 chr15 51907364 51907515 -33788239 - MER20 DNA MER1_type 0 219 43 1850 155 7 10 chr15 51907631 51907941 -33787813 + AluJb SINE Alu 1 309 -3 25 31 0 0 chr15 51907941 51907973 -33787781 + AT_rich Low_complexity Low_complexity 1 32 0 411 276 106 64 chr15 51908136 51908447 -33787307 + L2 LINE L2 2435 2758 -556 186 103 103 0 chr15 51908560 51908589 -33787165 + L3 LINE CR1 439 470 -1107 665 268 78 10 chr15 51908622 51908827 -33786927 + MIR SINE MIR 7 225 -37 493 233 17 121 chr15 51908827 51908939 -33786815 + LTR16C LTR ERVL 284 361 -130 2068 120 3 0 chr15 51908939 51909238 -33786516 - AluSx SINE Alu -12 300 1 493 233 17 121 chr15 51909238 51909357 -33786397 + LTR16C LTR ERVL 361 491 0 1032 275 74 20 chr15 51909364 51910092 -33785662 - L1ME LINE L1 -425 5806 5034 334 286 92 0 chr15 51910583 51910681 -33785073 - L2 LINE L2 0 3272 3166 385 332 171 11 chr15 51911161 51911447 -33784307 - L2 LINE L2 -1 3271 2940 1950 123 0 4 chr15 51912088 51912364 -33783390 + AluSg SINE Alu 1 275 -35 3076 194 69 45 chr15 51912392 51913221 -33782533 - MER97b DNA MER1_type? -203 850 2 2484 184 107 36 chr15 51913492 51913546 -33782208 - L1ME LINE L1 -1529 4686 4637 2168 166 108 34 chr15 51913546 51914016 -33781738 - MLT1D LTR MaLR 0 505 1 2484 184 107 36 chr15 51914016 51914679 -33781075 - L1ME LINE L1 -1578 4637 3918 2243 183 77 44 chr15 51914648 51915220 -33780534 - L1MEc LINE L1 -3180 3035 2437 * 1471 171 22 62 chr15 51915220 51915496 -33780258 - AluJo SINE Alu -3 309 46 1740 69 0 0 chr15 51915496 51915713 -33780041 - AluY SINE Alu -8 303 87 1471 171 22 62 chr15 51915713 51915758 -33779996 - AluJo SINE Alu -266 46 1 2243 183 77 44 chr15 51915758 51916076 -33779678 - L1MEc LINE L1 -3778 2437 2131 717 183 144 10 chr15 51916094 51916296 -33779458 - L1MEc LINE L1 -4535 1861 1633 1688 244 77 101 chr15 51916351 51917454 -33778300 - L2 LINE L2 -7 3306 2223 353 233 75 0 chr15 51917501 51917590 -33778164 + L1ME3A LINE L1 5660 5754 -408 183 42 0 0 chr15 51917591 51917615 -33778139 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 229 99 63 chr15 51917701 51917954 -33777800 + L1ME3A LINE L1 5907 6168 -2 647 287 196 23 chr15 51918574 51918922 -33776832 + L3 LINE CR1 760 1183 -394 2380 93 3 0 chr15 51918922 51919232 -33776522 + AluSp SINE Alu 1 311 -2 647 287 196 23 chr15 51919232 51919270 -33776484 + L3 LINE CR1 1183 1213 -364 334 323 116 8 chr15 51919264 51919415 -33776339 - MIR SINE MIR -62 146 16 * 21 0 0 0 chr15 51919428 51919449 -33776305 + AT_rich Low_complexity Low_complexity 1 21 0 190 227 23 0 chr15 51920037 51920081 -33775673 - L2 LINE L2 -295 2977 2933 228 265 68 20 chr15 51920272 51920419 -33775335 + HAL1 LINE L1 2006 2159 -348 489 250 7 56 chr15 51920438 51920582 -33775172 - L2 LINE L2 -8 3305 3169 548 224 9 0 chr15 51921163 51921270 -33774484 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 2739 119 136 113 chr15 51921262 51921995 -33773759 + Tigger3(Golem) DNA MER2_type 2278 3027 -2 29 70 0 0 chr15 51921999 51922056 -33773698 + AT_rich Low_complexity Low_complexity 1 57 0 3541 191 71 45 chr15 51922059 51922299 -33773455 - L1ME1 LINE L1 -4 6162 5930 592 122 56 0 chr15 51922299 51922406 -33773348 - L1MA8 LINE L1 -7 6284 6172 3541 191 71 45 chr15 51922406 51923241 -33772513 - L1ME1 LINE L1 -236 5930 5063 1906 172 0 3 chr15 51923241 51923532 -33772222 - AluJo SINE Alu -22 290 1 3541 191 71 45 chr15 51923532 51923623 -33772131 - L1ME1 LINE L1 -1103 5063 4976 3669 206 53 33 chr15 51923749 51923796 -33771958 - L1ME1 LINE L1 -1153 4993 4948 2303 110 0 0 chr15 51923796 51924105 -33771649 + AluSx SINE Alu 1 309 -3 3669 206 53 33 chr15 51924105 51925075 -33770679 - L1ME1 LINE L1 -1198 4948 3956 5214 141 29 33 chr15 51925117 51926083 -33769671 - L1MA9 LINE L1 -30 6282 5321 287 140 0 0 chr15 51926083 51926133 -33769621 - Alu SINE Alu 0 300 251 61 15 0 0 chr15 51926133 51926201 -33769553 + AT_rich Low_complexity Low_complexity 1 68 0 248 179 0 0 chr15 51926222 51926278 -33769476 + HAL1 LINE L1 2450 2505 -2 2218 95 18 0 chr15 51926502 51926787 -33768967 - AluSx SINE Alu -22 290 1 1347 126 31 59 chr15 51927410 51927466 -33768288 - L1MB3 LINE L1 0 6183 6127 2364 94 0 7 chr15 51927466 51927775 -33767979 - AluSg SINE Alu -3 307 1 1347 126 31 59 chr15 51927775 51928004 -33767750 - L1MB3 LINE L1 -56 6127 5906 2399 146 68 0 chr15 51928004 51928389 -33767365 + MSTB LTR MaLR 10 420 -6 2992 172 20 19 chr15 51928389 51928982 -33766772 - L1MB3 LINE L1 -254 5929 5336 240 35 0 0 chr15 51929080 51929109 -33766645 + (CTG)n Simple_repeat Simple_repeat 3 31 0 2157 86 25 0 chr15 51930918 51931198 -33764556 - AluSc SINE Alu -22 287 1 2218 153 70 0 chr15 51931235 51931635 -33764119 + MSTA LTR MaLR 1 428 0 2224 111 3 0 chr15 51931915 51932212 -33763542 - AluSg SINE Alu -12 298 1 659 240 45 57 chr15 51932317 51932583 -33763171 - L1MDa LINE L1 -4785 1641 1269 2101 101 18 0 chr15 51932583 51932913 -33762841 - AluSx SINE Alu 0 335 1 659 240 45 57 chr15 51932913 51932964 -33762790 - L1MDa LINE L1 -5157 1269 1219 1900 149 24 0 chr15 51932968 51933264 -33762490 - AluJb SINE Alu -9 303 1 188 132 0 26 chr15 51933275 51933313 -33762441 + (AGGGGG)n Simple_repeat Simple_repeat 2 38 0 349 91 0 0 chr15 51933313 51933357 -33762397 - Alu SINE Alu -239 62 19 882 199 34 24 chr15 51933360 51933656 -33762098 - L1MEc LINE L1 -5212 1184 886 1073 169 12 78 chr15 51933664 51933906 -33761848 - AluJo SINE Alu -12 300 75 24 32 0 0 chr15 51934398 51934429 -33761325 + AT_rich Low_complexity Low_complexity 1 31 0 524 204 10 0 chr15 51934674 51934772 -33760982 - MER94 DNA DNA -35 99 1 2252 63 3 11 chr15 51934922 51935231 -33760523 - AluY SINE Alu 0 307 1 1682 186 10 6 chr15 51935267 51935578 -33760176 - AluJo SINE Alu 0 312 1 2831 140 49 26 chr15 51935787 51936289 -33759465 - L1MC1 LINE L1 -5 6328 5812 257 0 0 29 chr15 51936289 51936323 -33759431 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2831 140 49 26 chr15 51936323 51936350 -33759404 - L1MC1 LINE L1 -521 5812 5787 1911 138 52 49 chr15 51937210 51937330 -33758424 + L1MA5A LINE L1 5860 5978 -319 1868 139 0 32 chr15 51937330 51937639 -33758115 + AluJo SINE Alu 10 308 -4 1911 138 52 49 chr15 51937639 51937925 -33757829 + L1MA5A LINE L1 5978 6267 -30 1149 214 62 4 chr15 51938806 51939049 -33756705 + MIR SINE MIR 6 262 0 197 232 179 0 chr15 51939682 51939738 -33756016 + MIR SINE MIR 121 186 -76 1477 207 32 0 chr15 51939982 51940262 -33755492 + AluJb SINE Alu 15 303 -9 333 269 14 14 chr15 51940426 51940543 -33755211 + MIR SINE MIR 91 206 -56 1557 148 113 4 chr15 51940630 51940886 -33754868 + AluJb SINE Alu 1 284 -28 2171 97 10 0 chr15 51941233 51941531 -33754223 + AluSp SINE Alu 1 301 -12 957 159 6 0 chr15 51941709 51941866 -33753888 + AluSg/x SINE Alu 144 301 -11 22 35 0 0 chr15 51942455 51942484 -33753270 + AT_rich Low_complexity Low_complexity 1 29 0 2409 118 113 16 chr15 51942585 51943026 -33752728 + MER31A LTR ERV1 2 485 0 514 172 366 0 chr15 51943562 51943696 -33752058 - MER5A DNA MER1_type 0 189 7 208 182 91 18 chr15 51944291 51944346 -33751408 - MIR SINE MIR -9 253 195 259 370 90 15 chr15 51944446 51944646 -33751108 - L2 LINE L2 -618 2696 2482 460 265 102 6 chr15 51944675 51944841 -33750913 - L2 LINE L2 -980 2334 2153 2044 74 7 7 chr15 51945135 51945405 -33750349 + AluSx SINE Alu 1 270 -42 2130 86 57 0 chr15 51945640 51945919 -33749835 + AluSp SINE Alu 1 295 -18 787 193 40 0 chr15 51945927 51946077 -33749677 - MLT1A1 LTR MaLR -205 160 5 8145 213 25 32 chr15 51946080 51947827 -33747927 - MLT1A2-int LTR MaLR 0 1735 1 997 175 44 167 chr15 51947827 51948087 -33747667 - MLT1A2 LTR MaLR 0 374 168 2180 125 0 7 chr15 51948087 51948391 -33747363 - AluSx SINE Alu -9 303 2 997 175 44 167 chr15 51948391 51948490 -33747264 - MLT1A2 LTR MaLR -206 168 59 263 172 81 92 chr15 51948508 51948595 -33747159 - MLT1A2 LTR MaLR -286 88 3 1363 195 45 70 chr15 51949277 51949315 -33746439 - L1ME2 LINE L1 -4 6162 6125 1582 186 50 0 chr15 51949315 51949594 -33746160 + AluJb SINE Alu 3 295 -17 1363 195 45 70 chr15 51949594 51950062 -33745692 - L1ME2 LINE L1 -41 6125 5672 214 255 7 43 chr15 51950063 51950204 -33745550 + T-rich Low_complexity Low_complexity 6 141 0 1311 219 45 59 chr15 51950277 51950502 -33745252 - L1ME LINE L1 -386 5778 5560 2167 124 0 7 chr15 51950502 51950801 -33744953 + AluSx SINE Alu 1 297 -15 1311 219 45 59 chr15 51950801 51950996 -33744758 - L1ME LINE L1 -604 5560 5364 * 1371 203 111 47 chr15 51950995 51951419 -33744335 - L1ME3A LINE L1 -112 6058 5608 464 282 174 0 chr15 51951420 51951569 -33744185 - MER5A DNA MER1_type -6 183 9 608 260 182 4 chr15 51951576 51951845 -33743909 - L1ME3A LINE L1 -548 5622 5306 1291 171 0 13 chr15 51951891 51952119 -33743635 - AluJb SINE Alu 0 312 88 344 106 0 0 chr15 51953145 51953192 -33742562 + AluSp/q SINE Alu 204 250 -53 1429 132 15 0 chr15 51953192 51953396 -33742358 + AluSg/x SINE Alu 94 300 -12 3308 185 109 44 chr15 51954920 51954958 -33740796 - L1MC4a LINE L1 0 7808 7774 2302 104 0 3 chr15 51954958 51955265 -33740489 + AluSc SINE Alu 1 306 -3 3308 185 109 44 chr15 51955265 51955287 -33740467 - L1MC4a LINE L1 -34 7774 7755 1843 126 26 0 chr15 51955287 51955556 -33740198 + AluSx SINE Alu 25 300 -12 3308 185 109 44 chr15 51955556 51956332 -33739422 - L1MC4a LINE L1 -53 7755 6917 192 286 16 16 chr15 51956448 51956511 -33739243 + MIR SINE MIR 89 151 -111 395 77 200 0 chr15 51958077 51958142 -33737612 + MADE1 DNA Mariner 1 78 -2 432 368 69 17 chr15 51958379 51958670 -33737084 + L2 LINE L2 2554 2859 -455 315 203 76 0 chr15 51958831 51958910 -33736844 - L1MC5 LINE L1 -60 7901 7817 310 300 84 79 chr15 51958946 51959173 -33736581 + L2 LINE L2 3040 3267 -5 813 157 37 120 chr15 51959266 51959566 -33736188 + L1ME3 LINE L1 5879 6153 -9 1937 147 0 0 chr15 51960346 51960631 -33735123 - AluSx SINE Alu -27 285 1 1020 125 6 12 chr15 51960880 51961040 -33734714 + FRAM SINE Alu 1 159 -7 2125 151 73 24 chr15 51961187 51961597 -33734157 - Tigger2a DNA MER2_type 0 434 5 1396 213 48 19 chr15 51961806 51962233 -33733521 + L1PA6 LINE L1 5407 6157 -9 622 222 71 30 chr15 51962282 51962480 -33733274 + L1MC5 LINE L1 7703 7908 -53 492 237 81 6 chr15 51962508 51962842 -33732912 - L1ME LINE L1 -699 5463 5106 334 306 12 0 chr15 51963080 51963165 -33732589 + MIR3 SINE MIR 119 204 -4 188 274 97 0 chr15 51964128 51964190 -33731564 - MIR SINE MIR -193 69 2 186 266 38 89 chr15 51965170 51965249 -33730505 - MIR3 SINE MIR -131 77 3 1319 158 165 8 chr15 51967284 51967544 -33728210 + AluJo SINE Alu 1 301 -1 1395 113 5 45 chr15 51967550 51967772 -33727982 + AluJo SINE Alu 89 301 -11 23 33 0 0 chr15 51967779 51967809 -33727945 + AT_rich Low_complexity Low_complexity 1 30 0 332 338 71 13 chr15 51968566 51968720 -33727034 - MIR SINE MIR -14 248 86 2552 224 78 3 chr15 51969087 51969779 -33725975 + MER20B DNA MER1_type 7 750 -33 200 239 60 15 chr15 51970192 51970259 -33725495 - MIR SINE MIR -40 222 153 929 109 0 14 chr15 51970735 51970873 -33724881 + AluSg/x SINE Alu 175 310 0 21 0 0 0 chr15 51971186 51971207 -33724547 + AT_rich Low_complexity Low_complexity 1 21 0 413 104 0 0 chr15 51971537 51971604 -33724150 + MER53 DNA DNA 123 189 0 2017 152 0 0 chr15 51972099 51972401 -33723353 + AluJb SINE Alu 5 306 -6 2019 70 70 0 chr15 51974048 51974321 -33721433 - AluY SINE Alu -19 292 1 227 184 0 0 chr15 51975198 51975236 -33720518 - MIR3 SINE MIR -21 187 150 2220 113 0 3 chr15 51975643 51975936 -33719818 + AluSx SINE Alu 1 292 -20 48 53 0 0 chr15 51977426 51977502 -33718252 + AT_rich Low_complexity Low_complexity 1 76 0 197 280 0 0 chr15 51978399 51978449 -33717305 - L2 LINE L2 0 3313 3264 480 225 156 35 chr15 51978789 51979020 -33716734 - MIR SINE MIR -2 260 2 234 265 15 15 chr15 51979247 51979315 -33716439 - MIR3 SINE MIR -24 184 117 230 301 14 0 chr15 51979896 51979969 -33715785 + MLT1I LTR MaLR 333 406 -3 702 286 37 5 chr15 51979996 51980185 -33715569 + MIR SINE MIR 61 255 -7 2133 108 0 17 chr15 51980427 51980724 -33715030 - AluSx SINE Alu -20 292 1 2551 65 0 0 chr15 51980741 51981048 -33714706 - AluY SINE Alu -4 307 1 1286 342 92 15 chr15 51981419 51982135 -33713619 + L2 LINE L2 502 1272 -2042 237 321 63 32 chr15 51982436 51982626 -33713128 + L2 LINE L2 2843 3038 -234 22 56 0 19 chr15 51982669 51982694 -33713060 + AT_rich Low_complexity Low_complexity 1 25 -28 2059 140 0 0 chr15 51982694 51982979 -33712775 + AluSx SINE Alu 2 286 -26 22 56 0 19 chr15 51982979 51983007 -33712747 + AT_rich Low_complexity Low_complexity 25 53 0 2505 186 24 32 chr15 51983008 51983636 -33712118 + L1ME2 LINE L1 5483 6105 -59 2326 114 3 0 chr15 51983718 51984024 -33711730 - AluSx SINE Alu -5 307 1 199 206 81 132 chr15 51984063 51984199 -33711555 + L2 LINE L2 3121 3249 -64 3213 63 23 0 chr15 51984199 51984626 -33711128 + LTR3b LTR ERVK 1 437 0 311 211 56 28 chr15 51984636 51984707 -33711047 + L2 LINE L2 3237 3309 -4 526 147 0 0 chr15 51985138 51985213 -33710541 + AluSg/x SINE Alu 215 289 -20 224 304 114 38 chr15 51985336 51985520 -33710234 - L2 LINE L2 -338 2976 2779 345 353 17 8 chr15 51986204 51986323 -33709431 - MIR SINE MIR -112 150 31 374 200 0 186 chr15 51987004 51987144 -33708610 - MER5B DNA MER1_type -1 177 64 900 146 61 12 chr15 51987183 51987348 -33708406 + MER5B DNA MER1_type 1 173 -5 1053 192 0 6 chr15 51987384 51987566 -33708188 - MER5A DNA MER1_type -7 182 2 240 228 59 66 chr15 51987956 51988092 -33707662 + MLT1K LTR MaLR 201 335 -253 333 274 123 19 chr15 51988101 51988207 -33707547 + L2 LINE L2 3140 3256 -16 385 209 0 0 chr15 51988208 51988299 -33707455 - L1MA10 LINE L1 -6 6328 6238 * 2189 246 58 15 chr15 51988289 51988861 -33706893 + L1M4 LINE L1 2161 2774 -3372 643 127 136 8 chr15 51988861 51988979 -33706775 + FLAM_A SINE Alu 1 133 0 2189 246 58 15 chr15 51988979 51989147 -33706607 + L1M4 LINE L1 2774 2933 -3213 721 132 99 0 chr15 51989193 51989314 -33706440 + AluJb SINE Alu 1 133 -179 201 74 0 0 chr15 51989318 51989345 -33706409 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 2148 77 7 4 chr15 51989462 51989735 -33706019 - AluSc SINE Alu -35 274 1 21 57 0 0 chr15 51990181 51990216 -33705538 + AT_rich Low_complexity Low_complexity 1 35 0 211 364 51 0 chr15 51990367 51990485 -33705269 + L2 LINE L2 2858 2981 -291 253 330 147 9 chr15 51990514 51990623 -33705131 + L2 LINE L2 3136 3259 -13 2531 44 0 3 chr15 51990966 51991264 -33704490 - AluY SINE Alu -14 297 1 247 188 94 35 chr15 51992549 51992634 -33703120 + L1M LINE L1 5267 5356 -810 1155 79 118 0 chr15 51992728 51992906 -33702848 - MER30 DNA MER1_type -31 199 1 246 260 30 20 chr15 51993031 51993131 -33702623 + (TA)n Simple_repeat Simple_repeat 2 102 0 309 252 179 16 chr15 51993191 51993314 -33702440 + L1ME LINE L1 5270 5412 -2396 40693 33 24 1 chr15 51993878 51999894 -33695860 - L1PA2 LINE L1 -2 6153 1 294 340 39 0 chr15 51999905 52000061 -33695693 + L1ME LINE L1 5607 5768 -353 1824 146 30 27 chr15 52000353 52000654 -33695100 - AluJo SINE Alu -10 302 1 1482 172 28 89 chr15 52000898 52001293 -33694461 + MLT1A2 LTR MaLR 4 374 0 2349 103 3 0 chr15 52001407 52001709 -33694045 - AluSq SINE Alu -10 303 1 1911 127 4 0 chr15 52002082 52002350 -33693404 - AluSq SINE Alu -44 269 1 907 277 115 102 chr15 52002619 52003453 -33692301 - L2 LINE L2 -512 2802 1958 776 303 90 25 chr15 52003626 52004071 -33691683 - MLT1K LTR MaLR -2 474 1 4171 142 22 32 chr15 52004382 52004528 -33691226 + L1MB2 LINE L1 5370 5516 -655 2110 159 3 37 chr15 52004528 52004906 -33690848 + MLT1A1 LTR MaLR 1 365 0 4171 142 22 32 chr15 52004906 52005569 -33690185 + L1MB2 LINE L1 5516 6171 0 2101 112 27 0 chr15 52005656 52005951 -33689803 - AluSg SINE Alu -7 303 1 527 209 110 0 chr15 52006571 52006762 -33688992 + L1 LINE L1 2512 2723 -3423 593 246 107 10 chr15 52006776 52007085 -33688669 + L1 LINE L1 2984 3322 -2824 346 309 74 4 chr15 52007226 52007456 -33688298 + L1 LINE L1 3388 3633 -2513 324 296 68 8 chr15 52007461 52007593 -33688161 + L1 LINE L1 3767 3906 -2240 186 320 145 17 chr15 52007642 52007814 -33687940 + L2 LINE L2 2830 3023 -249 2584 220 58 13 chr15 52007910 52008689 -33687065 - L1ME2 LINE L1 -94 6139 5283 2845 106 9 14 chr15 52008689 52009124 -33686630 - MER57B LTR ERV1 0 434 2 2584 220 58 13 chr15 52009124 52009511 -33686243 - L1ME2 LINE L1 -950 5283 4915 5350 111 9 17 chr15 52009516 52010103 -33685651 + HSMAR2 DNA Mariner 1 582 -720 2038 159 0 3 chr15 52010103 52010412 -33685342 - AluSx SINE Alu -4 308 1 5350 111 9 17 chr15 52010412 52010668 -33685086 + HSMAR2 DNA Mariner 582 838 -464 2193 240 82 19 chr15 52010703 52011684 -33684070 - L1ME2 LINE L1 -2801 3414 2373 793 244 46 29 chr15 52011791 52012098 -33683656 - L1ME2 LINE L1 -4163 2233 1922 * 1875 293 19 35 chr15 52012092 52012445 -33683309 - L1ME2 LINE L1 -5439 957 600 728 206 0 23 chr15 52012445 52012576 -33683178 - FLAM_C SINE Alu -5 128 1 1875 293 19 35 chr15 52012576 52013149 -33682605 - L1ME2 LINE L1 -5796 600 45 2178 189 68 100 chr15 52013387 52014004 -33681750 + L1MC5 LINE L1 6837 7473 -488 1296 176 121 13 chr15 52014004 52014311 -33681443 + MER58B DNA MER1_type 1 340 -1 2178 189 68 100 chr15 52014311 52014591 -33681163 + L1MC5 LINE L1 7473 7694 -267 2359 93 0 3 chr15 52014591 52014902 -33680852 - AluY SINE Alu -1 310 1 2178 189 68 100 chr15 52014902 52015110 -33680644 + L1MC5 LINE L1 7694 7907 -54 256 366 112 29 chr15 52015157 52015362 -33680392 + L2 LINE L2 3015 3236 -36 1710 171 50 0 chr15 52015846 52016126 -33679628 + AluJo SINE Alu 3 296 -16 207 309 52 22 chr15 52017239 52017375 -33678379 + L2 LINE L2 1903 2042 -1272 29616 32 2 27 chr15 52017437 52017450 -33678304 + L1P LINE L1 1585 1597 -4549 6117 18 3 0 chr15 52017450 52018108 -33677646 - L1PA2 LINE L1 0 6155 5496 29616 32 2 27 chr15 52018108 52021773 -33673981 + L1P LINE L1 1597 5171 -975 187 308 90 0 chr15 52022077 52022155 -33673599 - L2 LINE L2 -181 3091 3007 1102 81 7 0 chr15 52022443 52022579 -33673175 - L1PA16 LINE L1 -9 6157 6021 518 255 75 37 chr15 52022600 52022788 -33672966 - L2 LINE L2 0 3313 3119 254 250 42 0 chr15 52023054 52023126 -33672628 + L2 LINE L2 2852 2926 -346 436 147 88 39 chr15 52023126 52023228 -33672526 - L1MB1 LINE L1 0 6168 6062 318 278 11 0 chr15 52023488 52023578 -33672176 - L1MC4a LINE L1 -1875 5933 5843 989 150 52 16 chr15 52023582 52023775 -33671979 + Charlie5 DNA MER1_type 1 200 -2412 877 171 65 73 chr15 52023773 52024019 -33671735 + Charlie5 DNA MER1_type 2352 2597 -27 * 2313 92 3 0 chr15 52024019 52024322 -33671432 - AluY SINE Alu -7 304 1 877 171 65 73 chr15 52024322 52024350 -33671404 + Charlie5 DNA MER1_type 2597 2624 0 1335 250 25 14 chr15 52024360 52024724 -33671030 - L1MB5 LINE L1 -348 5826 5463 1404 95 0 0 chr15 52024850 52025039 -33670715 - AluY SINE Alu -4 307 119 21 36 0 0 chr15 52026493 52026521 -33669233 + AT_rich Low_complexity Low_complexity 1 28 0 2085 164 105 20 chr15 52026757 52027213 -33668541 + Charlie4a DNA MER1_type 14 508 0 21 71 0 0 chr15 52027383 52027425 -33668329 + AT_rich Low_complexity Low_complexity 1 42 0 274 239 65 11 chr15 52027516 52027608 -33668146 - MLT1J LTR MaLR 0 511 415 2223 141 0 0 chr15 52027616 52027928 -33667826 + AluSx SINE Alu 1 312 0 406 256 208 37 chr15 52028271 52028776 -33666978 - L1ME4a LINE L1 -178 5943 5315 2394 77 13 0 chr15 52028896 52029196 -33666558 - AluSp SINE Alu -9 304 1 253 235 103 29 chr15 52029332 52029468 -33666286 - L1ME4a LINE L1 -1940 4206 4061 950 187 18 0 chr15 52029510 52029681 -33666073 - AluJb SINE Alu -6 306 133 312 250 119 18 chr15 52029686 52029854 -33665900 - L1ME4a LINE L1 -2138 4008 3824 960 272 164 20 chr15 52031641 52032097 -33663657 + L1MC4a LINE L1 5315 5836 -1972 435 187 0 22 chr15 52032186 52032277 -33663477 + L1M1 LINE L1 4836 4924 -1222 1015 73 0 0 chr15 52032279 52032402 -33663352 + AluSp/q SINE Alu 181 303 -10 4093 111 32 8 chr15 52032404 52033287 -33662467 + L1M1 LINE L1 4914 5820 -484 * 5756 112 58 20 chr15 52033284 52033681 -33662073 + L1PA13 LINE L1 4931 5311 -852 2135 116 7 0 chr15 52033681 52033974 -33661780 - AluSc SINE Alu -14 295 1 5756 112 58 20 chr15 52033974 52034757 -33660997 + L1PA13 LINE L1 5311 6163 0 3094 69 106 22 chr15 52034757 52035201 -33660553 + L1MA2 LINE L1 5814 6303 -1 1050 203 95 29 chr15 52036938 52037179 -33658575 + Charlie1a DNA MER1_type 1 257 -1198 3893 175 86 15 chr15 52037193 52038159 -33657595 + Charlie1a DNA MER1_type 388 1448 -7 2315 88 3 7 chr15 52038386 52038682 -33657072 - AluSq SINE Alu -18 295 1 361 294 20 54 chr15 52039410 52039545 -33656209 + MIR SINE MIR 6 154 -54 204 226 123 66 chr15 52040450 52040556 -33655198 - MIR3 SINE MIR -7 201 90 285 299 99 67 chr15 52040953 52041298 -33654456 + L2 LINE L2 2912 3267 -5 2014 134 0 26 chr15 52042630 52042937 -33652817 - AluSx SINE Alu -13 299 1 222 37 0 0 chr15 52042982 52043009 -33652745 + (A)n Simple_repeat Simple_repeat 1 27 0 297 143 20 0 chr15 52043413 52043462 -33652292 + L1ME LINE L1 5545 5594 -527 582 204 136 20 chr15 52043642 52043789 -33651965 - Charlie8 DNA MER1_type -2218 199 36 3409 162 61 33 chr15 52043789 52044511 -33651243 + L1ME1 LINE L1 5362 6103 -63 233 73 0 24 chr15 52045879 52045920 -33649834 + (TA)n Simple_repeat Simple_repeat 2 41 0 2228 107 0 13 chr15 52046658 52046966 -33648788 + AluSx SINE Alu 1 304 -8 1628 143 0 8 chr15 52047395 52047633 -33648121 - MER46A DNA MER2_type 0 236 1 342 130 0 0 chr15 52048126 52048172 -33647582 - Tigger4(Zombi) DNA MER2_type 0 2731 2686 189 0 0 0 chr15 52052264 52052285 -33643469 + (T)n Simple_repeat Simple_repeat 1 21 0 280 0 24 24 chr15 52055214 52055255 -33640499 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1517 161 98 18 chr15 52055537 52055823 -33639931 + AluJo SINE Alu 1 309 -3 209 304 126 30 chr15 52056048 52056183 -33639571 - L2 LINE L2 -211 3061 2914 181 338 279 15 chr15 52056698 52056834 -33638920 + MIR3 SINE MIR 16 187 -21 1374 134 122 8 chr15 52057343 52057597 -33638157 + MSTA LTR MaLR 1 283 -145 807 115 154 0 chr15 52057832 52057962 -33637792 + MSTA LTR MaLR 279 428 0 1616 192 29 0 chr15 52058975 52059251 -33636503 - AluJo SINE Alu -28 284 1 2182 107 3 0 chr15 52059531 52059821 -33635933 - AluSq SINE Alu -22 291 1 1066 91 0 0 chr15 52059823 52059955 -33635799 - AluSq/x SINE Alu -180 132 1 213 313 47 31 chr15 52060714 52060778 -33634976 - L2 LINE L2 -1 3271 3207 6484 52 4 14 chr15 52060834 52060872 -33634882 + HUERS-P1 LTR ERV1 5470 5507 -756 2155 129 0 0 chr15 52060872 52061167 -33634587 - AluSx SINE Alu -17 295 1 6484 52 4 14 chr15 52061167 52061929 -33633825 + HUERS-P1 LTR ERV1 5507 6262 -1 4541 67 25 0 chr15 52061930 52062500 -33633254 + LTR8 LTR ERV1 1 584 -107 2214 227 38 110 chr15 52062507 52063250 -33632504 - L2 LINE L2 -304 3009 2214 2330 110 3 0 chr15 52063250 52063551 -33632203 + AluSx SINE Alu 1 302 -10 2214 227 38 110 chr15 52063551 52063565 -33632189 - L2 LINE L2 -1099 2214 2319 2069 75 11 0 chr15 52063565 52063833 -33631921 + AluY SINE Alu 28 298 -13 2214 227 38 110 chr15 52063833 52063936 -33631818 - L2 LINE L2 -993 2320 2211 1392 218 80 9 chr15 52064218 52064544 -33631210 + MLT1F LTR MaLR 175 523 -19 247 203 29 0 chr15 52064777 52064846 -33630908 + (TA)n Simple_repeat Simple_repeat 2 72 0 390 278 108 45 chr15 52064998 52065174 -33630580 + MIR SINE MIR 3 189 -73 2142 106 0 20 chr15 52066025 52066327 -33629427 - AluSg SINE Alu -14 296 1 378 253 55 0 chr15 52066755 52066846 -33628908 + MER5B DNA MER1_type 1 96 -82 1515 79 47 5 chr15 52067041 52067255 -33628499 + MLT2A1 LTR ERVL 222 444 0 542 278 40 7 chr15 52067306 52067457 -33628297 - MIR3 SINE MIR -22 186 31 864 269 48 16 chr15 52067493 52067742 -33628012 + MIR SINE MIR 6 262 0 180 0 0 0 chr15 52068953 52068973 -33626781 + (A)n Simple_repeat Simple_repeat 1 20 0 493 279 78 22 chr15 52070976 52071155 -33624599 + MIR3 SINE MIR 15 203 -5 317 260 14 0 chr15 52071340 52071413 -33624341 + MER116 DNA Mariner 6 79 -1 810 254 21 5 chr15 52071413 52071606 -33624148 - MIR SINE MIR -66 196 1 206 359 86 0 chr15 52071982 52072099 -33623655 - L2 LINE L2 -46 3226 3100 1837 111 0 0 chr15 52072148 52072401 -33623353 + AluSg SINE Alu 1 253 -57 206 0 69 0 chr15 52072468 52072497 -33623257 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 725 337 150 11 chr15 52072697 52073145 -33622609 + L2 LINE L2 2804 3313 0 1960 141 7 7 chr15 52073238 52073544 -33622210 + AluJb SINE Alu 1 306 -6 1603 150 42 42 chr15 52074488 52074795 -33620959 + AluJb SINE Alu 1 307 -5 196 383 8 67 chr15 52075018 52075138 -33620616 + MIR SINE MIR 35 147 -61 319 333 61 0 chr15 52075647 52075761 -33619993 + MIR SINE MIR 30 150 -58 269 349 94 0 chr15 52075767 52075873 -33619881 + MER5B DNA MER1_type 4 119 -59 372 320 99 39 chr15 52076872 52077053 -33618701 - MIR3 SINE MIR -10 198 7 302 267 99 0 chr15 52078033 52078134 -33617620 + L1M4 LINE L1 3089 3199 -2947 22 0 0 0 chr15 52078956 52078978 -33616776 + AT_rich Low_complexity Low_complexity 1 22 0 2159 114 7 0 chr15 52083342 52083649 -33612105 + AluSg SINE Alu 1 309 -1 481 256 92 51 chr15 52084387 52084582 -33611172 - MIR SINE MIR -11 251 49 29 0 0 0 chr15 52084694 52084723 -33611031 + AT_rich Low_complexity Low_complexity 1 29 0 315 304 59 37 chr15 52085115 52085250 -33610504 - MIR3 SINE MIR -68 140 3 198 209 0 0 chr15 52085334 52085377 -33610377 + A-rich Low_complexity Low_complexity 1 43 0 34 65 0 0 chr15 52088129 52088191 -33607563 + GC_rich Low_complexity Low_complexity 1 62 0 188 169 0 17 chr15 52088340 52088399 -33607355 + GA-rich Low_complexity Low_complexity 1 58 0 235 252 175 48 chr15 52089197 52089300 -33606454 - L2 LINE L2 -15 3257 3142 758 189 0 0 chr15 52189819 52189951 -33505803 - FLAM_C SINE Alu -1 132 1 1077 127 6 6 chr15 52191115 52191272 -33504482 + FRAM SINE Alu 5 161 -5 202 280 0 0 chr15 52191719 52191769 -33503985 - MIR SINE MIR -85 123 74 246 242 61 0 chr15 52194367 52194433 -33501321 + MIR SINE MIR 79 148 -60 286 267 52 43 chr15 52194475 52194591 -33501163 - MER91C DNA MER1_type 0 140 24 1018 99 6 43 chr15 52194674 52194836 -33500918 - MER5A DNA MER1_type -32 157 2 1736 164 7 0 chr15 52194845 52195114 -33500640 - AluJb SINE Alu -5 307 37 257 127 0 18 chr15 52195116 52195171 -33500583 - MER113 DNA MER1_type? -374 147 94 1996 185 40 9 chr15 52195171 52195599 -33500155 + L1MC/D LINE L1 5380 5820 -422 739 146 0 0 chr15 52195601 52195704 -33500050 + AluSq/x SINE Alu 2 104 -209 10095 162 25 16 chr15 52195807 52195874 -33499880 - L1M1 LINE L1 -5733 1832 1767 294 29 0 0 chr15 52195874 52195909 -33499845 + (TC)n Simple_repeat Simple_repeat 2 36 0 10095 162 25 16 chr15 52195909 52197645 -33498109 - L1M1 LINE L1 -5798 1767 12 471 198 50 0 chr15 52197646 52197755 -33497999 - MLT1A2 LTR MaLR -269 121 1 1537 271 34 2 chr15 52198520 52198985 -33496769 - HAL1 LINE L1 -724 1783 1304 1986 178 0 0 chr15 52199685 52199988 -33495766 + AluJb SINE Alu 5 307 -5 424 192 31 8 chr15 52199996 52200126 -33495628 + GA-rich Low_complexity Low_complexity 4 136 0 933 325 61 27 chr15 52200430 52201051 -33494703 + ERVL LTR ERVL 877 1518 -3478 1937 136 0 14 chr15 52201119 52201399 -33494355 - AluJo SINE Alu -23 289 14 732 338 75 9 chr15 52201510 52202007 -33493747 + ERVL LTR ERVL 1758 2351 -2948 1102 237 62 25 chr15 52202026 52202381 -33493373 - L1MEc LINE L1 -4414 1982 1615 905 148 0 21 chr15 52202387 52202529 -33493225 - FLAM_C SINE Alu -4 139 1 2297 267 66 24 chr15 52202578 52202594 -33493160 - L1MEc LINE L1 -5352 1044 1030 1869 167 10 7 chr15 52202594 52202894 -33492860 - AluJo SINE Alu -11 301 1 2297 267 66 24 chr15 52202894 52203095 -33492659 - L1MEc LINE L1 -5366 1030 839 1990 164 0 0 chr15 52203095 52203419 -33492335 - AluSx SINE Alu 0 312 1 2297 267 66 24 chr15 52203419 52204167 -33491587 - L1MEc LINE L1 -5557 839 37 752 222 65 0 chr15 52204191 52204344 -33491410 - AluJb SINE Alu -13 299 137 454 230 40 81 chr15 52204351 52204499 -33491255 - L1M LINE L1 -2388 5420 5279 411 306 72 83 chr15 52204577 52205383 -33490371 + L1MEc LINE L1 92 888 -5508 953 174 0 0 chr15 52205387 52205536 -33490218 + AluJb SINE Alu 7 155 -157 1644 144 15 0 chr15 52205536 52205799 -33489955 + MER1B DNA MER1_type 2 268 -71 687 203 0 59 chr15 52205801 52205954 -33489800 + AluSc SINE Alu 105 248 -61 1054 167 0 88 chr15 52205954 52206205 -33489549 + AluSq SINE Alu 85 313 0 568 113 35 9 chr15 52206334 52206449 -33489305 + MER53 DNA DNA 68 185 -4 226 217 17 0 chr15 52206577 52206637 -33489117 + MER113 DNA MER1_type? 46 106 -415 415 258 49 15 chr15 52206637 52206768 -33488986 - L1MC3 LINE L1 -3 7782 6107 705 246 30 0 chr15 52206789 52206988 -33488766 - L1MD2 LINE L1 -230 6129 5925 912 165 45 28 chr15 52206988 52207137 -33488617 + AluSg/x SINE Alu 120 265 -45 201 39 0 0 chr15 52207137 52207163 -33488591 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2105 136 3 0 chr15 52207168 52207469 -33488285 + AluSx SINE Alu 6 307 -5 912 165 45 28 chr15 52207469 52207489 -33488265 + AluSg/x SINE Alu 268 298 -12 330 127 14 84 chr15 52207491 52207562 -33488192 - L1MD2 LINE L1 -431 5928 5863 942 226 53 0 chr15 52207852 52208060 -33487694 - MER20 DNA MER1_type 0 219 1 2235 106 64 17 chr15 52208193 52208551 -33487203 - THE1C LTR MaLR 0 375 1 1009 132 11 90 chr15 52208586 52208775 -33486979 - AluSg/x SINE Alu -9 303 130 696 174 0 53 chr15 52209436 52209568 -33486186 + AluJb SINE Alu 179 303 -9 5202 147 44 32 chr15 52209596 52209653 -33486101 + L1MC1 LINE L1 5254 5309 -1024 2023 109 42 0 chr15 52209653 52209937 -33485817 + AluSq SINE Alu 1 296 -17 5202 147 44 32 chr15 52209937 52210697 -33485057 + L1MC1 LINE L1 5309 6089 -244 2193 113 3 0 chr15 52210697 52210981 -33484773 + AluSx SINE Alu 1 285 -27 5202 147 44 32 chr15 52210981 52211201 -33484553 + L1MC1 LINE L1 6089 6305 -28 3029 203 87 37 chr15 52211244 52212196 -33483558 + L1MC1 LINE L1 3946 4945 -1201 395 140 134 115 chr15 52212314 52212471 -33483283 + L1MA8 LINE L1 6113 6272 -19 1152 195 127 67 chr15 52212537 52213156 -33482598 + L1MC1 LINE L1 5177 5735 -429 803 178 0 15 chr15 52213540 52213675 -33482079 + FLAM_C SINE Alu 1 133 0 2266 117 0 7 chr15 52213681 52213988 -33481766 + AluSx SINE Alu 1 305 -7 612 231 65 18 chr15 52214153 52214322 -33481432 - MIR SINE MIR -4 258 82 24 0 0 0 chr15 52215778 52215802 -33479952 + AT_rich Low_complexity Low_complexity 1 24 0 312 324 141 0 chr15 52218012 52218154 -33477600 - MIR SINE MIR 0 262 101 786 244 13 18 chr15 52218236 52218461 -33477293 + L1MC1 LINE L1 6110 6333 0 916 265 36 55 chr15 52218715 52219191 -33476563 + L1MC4a LINE L1 5531 5997 -1811 325 263 81 3 chr15 52219323 52219423 -33476331 - MIR SINE MIR -97 111 13 2411 83 3 0 chr15 52221477 52221789 -33473965 - AluSq SINE Alu 0 313 1 279 290 108 0 chr15 52221809 52221902 -33473852 + L2 LINE L2 3136 3238 -34 2163 111 0 0 chr15 52223211 52223518 -33472236 - AluSg1 SINE Alu -2 307 1 1364 196 43 78 chr15 52225102 52225499 -33470255 + MLT1B LTR MaLR 1 383 -7 1210 123 0 0 chr15 52225986 52226156 -33469598 - AluJb SINE Alu -14 298 129 314 261 165 23 chr15 52226353 52226614 -33469140 - L1ME4a LINE L1 -210 5911 5614 239 158 0 0 chr15 52226877 52226915 -33468839 + MIR SINE MIR 110 147 -115 191 221 15 15 chr15 52227377 52227445 -33468309 + L2 LINE L2 2995 3062 -210 928 144 7 0 chr15 52228133 52228286 -33467468 - AluJb SINE Alu -14 298 145 1180 193 98 68 chr15 52228296 52228483 -33467271 - LTR37A LTR ERV1 -13 413 233 360 0 0 0 chr15 52228483 52228523 -33467231 + (TG)n Simple_repeat Simple_repeat 2 41 0 1180 193 98 68 chr15 52228523 52228734 -33467020 - LTR37A LTR ERV1 -193 233 3 1670 183 0 16 chr15 52228887 52229204 -33466550 - AluJb SINE Alu 0 312 1 1532 127 119 0 chr15 52229430 52229682 -33466072 - AluJb SINE Alu -24 288 7 480 133 0 0 chr15 52229689 52229772 -33465982 + (CA)n Simple_repeat Simple_repeat 2 84 0 2212 101 0 3 chr15 52229786 52230084 -33465670 - AluSx SINE Alu -15 297 1 728 323 122 10 chr15 52230119 52230310 -33465444 - L1MC4a LINE L1 -1940 5868 5700 282 29 0 0 chr15 52230310 52230345 -33465409 + (TG)n Simple_repeat Simple_repeat 2 36 0 728 323 122 10 chr15 52230345 52230571 -33465183 - L1MC4a LINE L1 -2108 5700 5404 544 291 30 11 chr15 52231250 52231449 -33464305 + MIR SINE MIR 1 203 -59 244 365 0 9 chr15 52231720 52231827 -33463927 + L2 LINE L2 2905 3010 -262 270 289 0 31 chr15 52231869 52231966 -33463788 + L1MC/D LINE L1 4926 5019 -1127 2828 222 75 11 chr15 52231993 52232686 -33463068 + L1ME3A LINE L1 5429 6165 -5 192 152 0 0 chr15 52232771 52232804 -33462950 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 1045 279 74 15 chr15 52232819 52233337 -33462417 + L1MC/D LINE L1 5175 5716 -749 2589 199 42 32 chr15 52234005 52234689 -33461065 - Zaphod DNA AcHobo -42 3989 3299 2811 213 47 2 chr15 52234713 52235286 -33460468 - Zaphod DNA AcHobo -3389 642 44 512 196 181 104 chr15 52235291 52235414 -33460340 - MER5C DNA MER1_type -33 291 179 2026 104 21 0 chr15 52235414 52235701 -33460053 + AluSx SINE Alu 11 303 -9 512 196 181 104 chr15 52235701 52235847 -33459907 - MER5C DNA MER1_type -145 179 1 386 0 41 0 chr15 52236448 52236497 -33459257 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 9113 21 1 233 chr15 52236497 52238272 -33457482 - SVA Other Other -19 1367 4 323 316 0 43 chr15 52238383 52238570 -33457184 + G-rich Low_complexity Low_complexity 1 179 0 22 0 0 0 chr15 52238588 52238610 -33457144 + GC_rich Low_complexity Low_complexity 1 22 0 21 161 0 0 chr15 52238821 52238852 -33456902 + GC_rich Low_complexity Low_complexity 1 31 0 240 35 0 0 chr15 52238909 52238938 -33456816 + (GGGAGA)n Simple_repeat Simple_repeat 6 34 0 726 155 441 11 chr15 52239237 52239502 -33456252 + MLT1F LTR MaLR 189 542 0 302 289 79 9 chr15 52239509 52239623 -33456131 + L2 LINE L2 1728 1849 -1465 678 226 34 17 chr15 52239691 52239868 -33455886 - LTR16A1 LTR ERVL -13 444 265 1614 205 16 45 chr15 52241436 52241817 -33453937 - MLT1A2 LTR MaLR -4 370 1 180 254 119 0 chr15 52242389 52242448 -33453306 - L3 LINE CR1 -1129 448 383 2062 109 0 7 chr15 52242907 52243236 -33452518 - AluSx SINE Alu 0 327 1 413 290 95 122 chr15 52243298 52243939 -33451815 + L2 LINE L2 2228 2851 -463 245 244 0 51 chr15 52243942 52244020 -33451734 - LTR67 LTR ERVL 0 557 484 * 2018 241 23 48 chr15 52243965 52244524 -33451230 - MLT1K LTR MaLR -23 565 21 287 304 63 93 chr15 52244566 52244748 -33451006 + L2 LINE L2 2950 3120 -152 1878 104 45 0 chr15 52244748 52245045 -33450709 - AluSx SINE Alu 0 309 1 287 304 63 93 chr15 52245045 52245193 -33450561 + L2 LINE L2 3120 3271 -1 575 321 168 4 chr15 52245235 52245503 -33450251 + L3 LINE CR1 700 1011 -566 757 321 44 26 chr15 52245721 52246198 -33449556 - L1ME2 LINE L1 -267 5897 5393 751 189 0 0 chr15 52246198 52246330 -33449424 - FLAM_C SINE Alu -1 132 1 757 321 44 26 chr15 52246330 52246473 -33449281 - L1ME2 LINE L1 -771 5393 5254 498 356 14 40 chr15 52246569 52246844 -33448910 + L3 LINE CR1 1251 1518 -59 3763 151 17 21 chr15 52247189 52247856 -33447898 - MER39 LTR ERV1 0 707 2 2588 168 17 44 chr15 52248569 52248961 -33446793 - MER70B LTR ERVL -109 469 91 2289 97 0 0 chr15 52248961 52249261 -33446493 - AluSx SINE Alu -12 300 1 2588 168 17 44 chr15 52249261 52249350 -33446404 - MER70B LTR ERVL -487 91 1 4445 142 24 7 chr15 52250174 52250873 -33444881 + MER50 LTR ERV1 1 711 -23 189 0 0 0 chr15 52251904 52251925 -33443829 + (CA)n Simple_repeat Simple_repeat 1 21 0 453 19 0 0 chr15 52251938 52251992 -33443762 + (GA)n Simple_repeat Simple_repeat 1 54 0 1969 131 26 88 chr15 52253188 52253418 -33442336 - MLT1A1 LTR MaLR 0 365 167 1869 165 0 0 chr15 52253418 52253709 -33442045 - AluJb SINE Alu -21 291 1 1969 131 26 88 chr15 52253709 52253866 -33441888 - MLT1A1 LTR MaLR -198 167 2 201 147 0 0 chr15 52255726 52255760 -33439994 + (TG)n Simple_repeat Simple_repeat 1 34 0 384 316 18 0 chr15 52255887 52256058 -33439696 + (TG)n Simple_repeat Simple_repeat 1 174 0 428 322 11 11 chr15 52256095 52256269 -33439485 + (TG)n Simple_repeat Simple_repeat 2 175 0 622 261 44 108 chr15 52257902 52258291 -33437463 + MLT1H LTR MaLR 55 458 -91 1650 167 40 0 chr15 52258414 52258534 -33437220 + AluJo SINE Alu 1 115 -197 185 0 40 0 chr15 52258534 52258559 -33437195 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1650 167 40 0 chr15 52258559 52258737 -33437017 + AluJo SINE Alu 115 311 -1 361 302 29 70 chr15 52258795 52259037 -33436717 + MLT1H-int LTR MaLR 313 544 -827 1457 183 0 52 chr15 52259394 52259722 -33436032 + AluJo SINE Alu 1 311 -1 816 154 66 0 chr15 52259915 52260051 -33435703 + AluSg/x SINE Alu 162 306 -6 5732 200 72 59 chr15 52260089 52260208 -33435546 + L1MEc LINE L1 1644 1760 -4455 1762 114 3 108 chr15 52260208 52260540 -33435214 - AluSx SINE Alu -15 297 1 5732 200 72 59 chr15 52260540 52260740 -33435014 + L1MEc LINE L1 1760 1956 -4259 14611 114 35 50 chr15 52260740 52262210 -33433544 + Tigger1 DNA MER2_type 1 1490 -928 1971 116 7 17 chr15 52262210 52262504 -33433250 - AluSx SINE Alu -21 291 1 14611 114 35 50 chr15 52262504 52263034 -33432720 + Tigger1 DNA MER2_type 1490 1962 -456 1404 168 82 45 chr15 52263034 52263326 -33432428 - AluJo SINE Alu -9 303 1 14611 114 35 50 chr15 52263326 52263777 -33431977 + Tigger1 DNA MER2_type 1962 2418 0 5732 200 72 59 chr15 52263777 52265465 -33430289 + L1MEc LINE L1 1956 3621 -2594 1709 133 11 7 chr15 52265465 52265735 -33430019 + AluSx SINE Alu 27 297 -15 5732 200 72 59 chr15 52265735 52265749 -33430005 + L1MEc LINE L1 3621 3633 -2582 1652 152 14 20 chr15 52265749 52266046 -33429708 + AluSx SINE Alu 6 300 -12 5732 200 72 59 chr15 52266046 52266386 -33429368 + L1MEc LINE L1 3633 4019 -2196 2095 71 0 4 chr15 52266411 52266678 -33429076 - AluSx SINE Alu -23 289 24 942 242 21 42 chr15 52266785 52267025 -33428729 + MIR SINE MIR 2 236 -26 395 262 224 16 chr15 52267156 52267303 -33428451 + MIR SINE MIR 22 191 -71 723 297 114 25 chr15 52268445 52268681 -33427073 + MIR SINE MIR 6 262 0 209 174 130 0 chr15 52268715 52268761 -33426993 + L2 LINE L2 3262 3313 0 27 0 0 0 chr15 52268963 52268990 -33426764 + AT_rich Low_complexity Low_complexity 1 27 0 335 329 148 6 chr15 52269221 52269548 -33426206 + L2 LINE L2 2692 3059 -213 1192 133 31 20 chr15 52270071 52270266 -33425488 + MER30 DNA MER1_type 1 197 -33 1742 107 103 4 chr15 52270934 52271197 -33424557 - AluJb SINE Alu -23 289 1 906 207 39 0 chr15 52271599 52271778 -33423976 + MER5A DNA MER1_type 1 186 -3 646 224 58 6 chr15 52272489 52272645 -33423109 + MIR SINE MIR 75 238 -24 1196 187 149 10 chr15 52272904 52273193 -33422561 - MER46B DNA MER2_type 0 236 33 2031 114 0 4 chr15 52274467 52274740 -33421014 + AluSg SINE Alu 16 287 -23 222 236 126 11 chr15 52275438 52275543 -33420211 - MIR SINE MIR -69 139 40 2366 91 14 0 chr15 52275729 52276026 -33419728 - AluSp SINE Alu -9 304 4 207 229 128 37 chr15 52276177 52276286 -33419468 + L2 LINE L2 2123 2241 -1073 2046 133 29 32 chr15 52276599 52276975 -33418779 - THE1C LTR MaLR 0 375 1 1243 189 79 14 chr15 52276999 52277279 -33418475 + AluJo SINE Alu 1 298 -14 636 228 84 0 chr15 52278000 52278206 -33417548 + MLT1G1 LTR MaLR 1 188 -402 1469 213 74 8 chr15 52278235 52278601 -33417153 + MLT1B LTR MaLR 1 390 0 232 366 65 0 chr15 52278623 52278716 -33417038 + L2 LINE L2 3171 3269 -3 299 191 0 85 chr15 52278740 52278834 -33416920 + FLAM_C SINE Alu 26 111 -22 267 250 17 8 chr15 52278935 52278991 -33416763 + GA-rich Low_complexity Low_complexity 3 57 -66 1969 148 23 3 chr15 52278991 52279296 -33416458 + AluSq SINE Alu 1 311 -2 267 250 17 8 chr15 52279296 52279359 -33416395 + GA-rich Low_complexity Low_complexity 57 123 0 1854 127 38 24 chr15 52280504 52280796 -33414958 + AluSx SINE Alu 1 296 -16 2226 104 0 23 chr15 52281499 52281808 -33413946 - AluSx SINE Alu -8 304 3 265 242 45 0 chr15 52281820 52281886 -33413868 - AluS SINE Alu -6 294 226 504 232 125 6 chr15 52281987 52282155 -33413599 - L1ME LINE L1 -415 5706 5519 2034 115 26 0 chr15 52282325 52282624 -33413130 + AluSx SINE Alu 6 311 0 2008 146 3 0 chr15 52283459 52283753 -33412001 + AluJb SINE Alu 1 295 -17 554 72 21 52 chr15 52283781 52283878 -33411876 - AluY SINE Alu 0 311 218 643 171 0 64 chr15 52283915 52283971 -33411783 + FLAM_A SINE Alu 2 60 -251 2249 114 71 0 chr15 52283971 52284323 -33411431 - MER51B LTR ERV1 0 377 1 643 171 0 64 chr15 52284323 52284397 -33411357 + FLAM_A SINE Alu 57 124 -184 2260 97 0 3 chr15 52284397 52284687 -33411067 - AluSq SINE Alu -23 290 2 1538 109 0 5 chr15 52284690 52284900 -33410854 - AluSg/x SINE Alu -19 293 85 1177 82 0 6 chr15 52287022 52287180 -33408574 - AluSq SINE Alu -20 293 137 74 91 0 0 chr15 52287235 52287411 -33408343 + AT_rich Low_complexity Low_complexity 1 176 0 35 78 0 0 chr15 52287513 52287590 -33408164 + AT_rich Low_complexity Low_complexity 1 77 0 243 351 53 0 chr15 52287765 52287859 -33407895 + L2 LINE L2 3171 3269 -3 1897 106 0 45 chr15 52287883 52288175 -33407579 + AluJo SINE Alu 26 304 -8 187 256 22 22 chr15 52288508 52288598 -33407156 - L2 LINE L2 -1281 2033 1944 264 174 112 61 chr15 52291054 52291152 -33404602 - MLT1J LTR MaLR -29 482 380 250 208 13 65 chr15 52292968 52293045 -33402709 - MLT1J LTR MaLR -116 395 323 486 281 114 6 chr15 52293169 52293336 -33402418 + MIR SINE MIR 47 231 -31 969 281 94 18 chr15 52293506 52293928 -33401826 - L1ME LINE L1 -361 5809 5353 734 185 8 0 chr15 52293969 52294099 -33401655 - AluJo SINE Alu -175 137 7 863 277 128 18 chr15 52294148 52294758 -33400996 - L1ME LINE L1 -1007 5139 4398 609 138 20 72 chr15 52294765 52294852 -33400902 - L1MA10 LINE L1 -15 6319 6242 3604 111 65 2 chr15 52294852 52295373 -33400381 - MER41C LTR ERV1 0 554 1 609 138 20 72 chr15 52295373 52295437 -33400317 - L1MA10 LINE L1 -92 6242 6176 656 220 70 56 chr15 52295451 52295665 -33400089 - L1ME1 LINE L1 -140 6026 5810 * 1936 204 167 35 chr15 52295659 52296198 -33399556 - L1MD2 LINE L1 -2 6357 5748 633 179 97 22 chr15 52296292 52296426 -33399328 + MLT1H LTR MaLR 57 200 -349 1916 176 115 35 chr15 52296436 52296802 -33398952 - L1MD2 LINE L1 -420 5758 5317 2277 103 0 3 chr15 52296802 52297103 -33398651 - AluSx SINE Alu -12 300 1 1916 176 115 35 chr15 52297103 52297331 -33398423 - L1MD2 LINE L1 -861 5317 5109 * 2461 183 135 3 chr15 52297330 52297915 -33397839 - L1ME1 LINE L1 -340 5826 5188 933 123 68 7 chr15 52297915 52298061 -33397693 - MLT1B LTR MaLR -235 155 1 1708 219 80 46 chr15 52298152 52298627 -33397127 + MLT1H LTR MaLR 58 548 -1 2165 114 3 3 chr15 52298632 52298930 -33396824 - AluSg SINE Alu -12 298 1 416 343 0 0 chr15 52298933 52299079 -33396675 + L2 LINE L2 2922 3067 -246 1636 166 3 48 chr15 52299110 52299424 -33396330 - AluJo SINE Alu -12 300 1 24 53 0 0 chr15 52300460 52300498 -33395256 + AT_rich Low_complexity Low_complexity 1 38 0 2164 64 8 15 chr15 52300754 52301019 -33394735 - AluSq SINE Alu -12 301 39 301 295 66 16 chr15 52301087 52301209 -33394545 + MIR SINE MIR 58 185 -77 396 246 200 23 chr15 52301215 52301390 -33394364 - L2 LINE L2 -1 3312 3107 1110 176 181 13 chr15 52301390 52301628 -33394126 + AluJb SINE Alu 1 278 -34 22 0 0 0 chr15 52303150 52303172 -33392582 + AT_rich Low_complexity Low_complexity 1 22 0 219 258 167 0 chr15 52305198 52305264 -33390490 - MIR3 SINE MIR -21 187 111 2286 108 3 0 chr15 52305422 52305717 -33390037 - AluSp SINE Alu -17 296 1 2161 116 3 13 chr15 52305719 52306021 -33389733 - AluSx SINE Alu -13 299 1 871 270 119 24 chr15 52306256 52306824 -33388930 - L1ME4a LINE L1 -193 5928 5313 351 217 161 21 chr15 52306938 52307081 -33388673 + MIR3 SINE MIR 19 181 -27 2212 105 7 0 chr15 52307326 52307612 -33388142 + AluSp SINE Alu 1 288 -25 2311 107 0 0 chr15 52307663 52307963 -33387791 + AluSq SINE Alu 1 300 -13 621 179 0 0 chr15 52307963 52308086 -33387668 + GA-rich Low_complexity Low_complexity 1 123 0 1483 178 13 53 chr15 52308199 52308502 -33387252 + AluJo SINE Alu 1 291 -21 2052 108 0 4 chr15 52308612 52308880 -33386874 + AluSg SINE Alu 1 267 -43 313 111 56 0 chr15 52308885 52308939 -33386815 + AluSg/q SINE Alu 244 300 -3 2175 106 0 39 chr15 52309624 52309935 -33385819 - AluSg SINE Alu -11 299 1 1885 204 53 2 chr15 52309944 52310361 -33385393 + L1MD2 LINE L1 5908 6345 -14 1827 112 18 22 chr15 52310368 52310644 -33385110 + AluSx SINE Alu 1 275 -37 1840 172 3 13 chr15 52310704 52311012 -33384742 + AluJo SINE Alu 5 309 -3 21 36 0 0 chr15 52311018 52311046 -33384708 + AT_rich Low_complexity Low_complexity 1 28 0 228 363 34 14 chr15 52311334 52311480 -33384274 - MIR3 SINE MIR 0 208 60 1849 163 0 19 chr15 52311515 52311822 -33383932 - AluJo SINE Alu -11 301 1 314 174 0 0 chr15 52311936 52311982 -33383772 + Alu SINE Alu 1 46 -254 226 343 48 29 chr15 52312391 52312496 -33383258 - L3 LINE CR1 -893 684 578 612 200 14 50 chr15 52313387 52313527 -33382227 + MER21A LTR ERV1 130 264 -667 3014 153 64 24 chr15 52313532 52314067 -33381687 + MER21A LTR ERV1 376 931 0 233 191 115 64 chr15 52315182 52315339 -33380415 - L1ME4a LINE L1 -31 6090 5926 3134 239 73 53 chr15 52315863 52315978 -33379776 - L1MC4 LINE L1 -1 8041 7930 216 0 0 0 chr15 52315978 52316002 -33379752 + (TC)n Simple_repeat Simple_repeat 1 24 0 3134 239 73 53 chr15 52316002 52317085 -33378669 - L1MC4 LINE L1 -112 7930 6819 431 253 87 13 chr15 52317110 52317260 -33378494 - HAL1 LINE L1 -48 2459 2299 3429 240 87 47 chr15 52317267 52317723 -33378031 - HAL1 LINE L1 -287 2220 1784 1909 135 7 17 chr15 52317723 52318019 -33377735 - AluJb SINE Alu -19 293 1 3429 240 87 47 chr15 52318019 52318893 -33376861 - HAL1 LINE L1 -723 1784 836 1738 185 120 88 chr15 52318949 52319564 -33376190 - L1ME1 LINE L1 -13 6153 5519 914 33 0 25 chr15 52320086 52320206 -33375548 + L1PA5 LINE L1 6038 6154 0 660 191 66 0 chr15 52320206 52320358 -33375396 - L1ME1 LINE L1 -623 5539 5378 1467 278 107 18 chr15 52320368 52320912 -33374842 - HAL1 LINE L1 -1682 825 234 3632 144 115 24 chr15 52321288 52321990 -33373764 - L1MC2 LINE L1 -8 6336 5571 270 147 28 28 chr15 52322507 52322616 -33373138 + (TA)n Simple_repeat Simple_repeat 2 110 0 1088 112 0 112 chr15 52322617 52322805 -33372949 - AluSq SINE Alu -146 167 1 23 33 0 0 chr15 52323091 52323121 -33372633 + AT_rich Low_complexity Low_complexity 1 30 0 254 71 0 24 chr15 52323772 52323814 -33371940 + (TTC)n Simple_repeat Simple_repeat 1 41 0 542 336 58 76 chr15 52324856 52325302 -33370452 - L2 LINE L2 -1 3271 2834 254 343 48 29 chr15 52325388 52325493 -33370261 + L3 LINE CR1 578 684 -893 210 196 0 0 chr15 52326224 52326270 -33369484 - L2 LINE L2 -4 3268 3223 245 271 180 41 chr15 52327272 52327394 -33368360 - L3 LINE CR1 -286 1291 1153 460 239 142 8 chr15 52327525 52327659 -33368095 - MIR SINE MIR -17 245 94 1145 161 0 70 chr15 52327832 52327862 -33367892 - AluJb SINE Alu 0 312 281 2134 107 3 27 chr15 52327862 52328160 -33367594 + AluSx SINE Alu 1 291 -21 1145 161 0 70 chr15 52328160 52328372 -33367382 - AluJb SINE Alu -31 281 87 2323 91 16 0 chr15 52328653 52328960 -33366794 + AluSq SINE Alu 1 312 -1 216 0 0 0 chr15 52329456 52329480 -33366274 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1587 142 60 57 chr15 52329482 52329763 -33365991 - AluJo SINE Alu -30 282 1 4110 191 83 0 chr15 52330151 52330970 -33364784 - MLT1C-int LTR MaLR -484 887 1 2100 189 64 14 chr15 52330970 52331409 -33364345 - MLT1C LTR MaLR 0 467 7 730 250 34 74 chr15 52331587 52331883 -33363871 + L2 LINE L2 3030 3313 0 249 184 61 0 chr15 52332990 52333039 -33362715 - L2 LINE L2 -8 3264 3213 934 250 89 27 chr15 52333775 52333998 -33361756 + MLT1G1 LTR MaLR 1 248 -347 195 42 0 0 chr15 52333998 52334022 -33361732 + (TC)n Simple_repeat Simple_repeat 1 24 0 934 250 89 27 chr15 52334022 52334090 -33361664 + MLT1G1 LTR MaLR 248 310 -285 371 248 40 10 chr15 52334086 52334187 -33361567 + MLT1L LTR MaLR 228 331 -284 * 230 270 22 66 chr15 52334276 52334413 -33361341 + MLT1L LTR MaLR 481 611 -4 426 295 62 1 chr15 52334750 52334912 -33360842 + MIR SINE MIR 2 172 -65 471 204 0 0 chr15 52334999 52335097 -33360657 + L1MA10 LINE L1 6233 6330 -4 276 254 90 13 chr15 52335161 52335319 -33360435 + MER102a DNA MER1_type 152 330 0 472 276 118 29 chr15 52335349 52335519 -33360235 + MER5A DNA MER1_type 5 189 0 259 260 63 16 chr15 52335653 52335752 -33360002 - MIR SINE MIR -103 105 3 275 302 0 0 chr15 52335941 52336004 -33359750 + G-rich Low_complexity Low_complexity 2 64 0 1967 148 60 33 chr15 52336066 52336431 -33359323 - THE1C LTR MaLR 0 375 1 244 209 0 0 chr15 52336594 52336637 -33359117 - MLT1L LTR MaLR -221 394 352 2098 121 0 29 chr15 52336744 52337050 -33358704 - AluSx SINE Alu -15 297 1 254 294 29 0 chr15 52337124 52337192 -33358562 - MLT1L LTR MaLR -544 71 2 2237 113 0 3 chr15 52337924 52338224 -33357530 + AluSx SINE Alu 1 299 -13 1430 201 97 6 chr15 52338942 52339004 -33356750 + Tigger3(Golem) DNA MER2_type 2662 2717 -312 1576 117 4 4 chr15 52339004 52339234 -33356520 - AluSx SINE Alu -82 230 1 1430 201 97 6 chr15 52339234 52339500 -33356254 + Tigger3(Golem) DNA MER2_type 2717 3020 -9 537 246 31 0 chr15 52339833 52339963 -33355791 + LTR67 LTR ERVL 422 555 -2 278 321 9 9 chr15 52340222 52340328 -33355426 + MER5B DNA MER1_type 64 169 -9 329 296 20 10 chr15 52340339 52340437 -33355317 + MER5A DNA MER1_type 17 115 -74 767 249 17 18 chr15 52340579 52340823 -33354931 + L1ME LINE L1 5592 5840 -306 347 160 13 0 chr15 52341007 52341082 -33354672 + (TA)n Simple_repeat Simple_repeat 1 76 0 293 198 119 30 chr15 52341082 52341183 -33354571 - L1MC5 LINE L1 -32 7929 7820 484 198 64 32 chr15 52341239 52341396 -33354358 - L1MC5 LINE L1 -367 7594 7433 735 160 0 0 chr15 52341402 52341521 -33354233 + MER3 DNA MER1_type 51 122 -87 2002 134 23 3 chr15 52341528 52341872 -33353882 + MER3 DNA MER1_type 2234 2584 0 1414 235 37 15 chr15 52341890 52342214 -33353540 + LTR16C LTR ERVL 159 489 -2 1996 275 86 68 chr15 52342216 52343587 -33352167 - L1MC4a LINE L1 -907 6901 5506 1856 193 48 98 chr15 52343595 52344138 -33351616 + MLT2B1 LTR ERVL 1 516 -4 895 280 116 32 chr15 52344146 52344770 -33350984 - L1MC4a LINE L1 -744 5402 4832 5258 151 30 27 chr15 52344770 52345630 -33350124 - MER21B LTR ERV1 0 863 1 895 280 116 32 chr15 52345630 52346185 -33349569 - L1MC4a LINE L1 -1314 4832 4194 406 320 86 50 chr15 52346188 52346631 -33349123 - L1MC4a LINE L1 -2413 3733 3275 819 254 70 48 chr15 52346726 52347100 -33348654 + LTR38B LTR ERV1 198 579 -31 682 288 99 62 chr15 52347134 52347713 -33348041 - L1MC4a LINE L1 -2859 3287 2684 1504 206 10 10 chr15 52347713 52348024 -33347730 + AluJb SINE Alu 1 311 -1 682 288 99 62 chr15 52348024 52348052 -33347702 - L1MC4a LINE L1 -3462 2684 2658 434 315 74 33 chr15 52348087 52348357 -33347397 - L1MC4a LINE L1 -3582 2564 2284 1244 150 4 30 chr15 52348828 52349061 -33346693 - L1MA4 LINE L1 0 6300 6074 785 297 100 40 chr15 52349097 52349794 -33345960 - HAL1b LINE L1 -512 836 98 588 247 32 19 chr15 52349841 52349999 -33345755 + L1ME1 LINE L1 6003 6162 -4 1493 254 61 28 chr15 52350004 52350501 -33345253 + MLT1H1 LTR MaLR 12 595 0 11358 173 26 21 chr15 52350840 52350860 -33344894 - L1PB4 LINE L1 -248 5908 5890 1816 139 0 14 chr15 52350860 52351141 -33344613 - L1PB4 LINE L1 -2 6154 5878 11358 173 26 21 chr15 52351141 52351158 -33344596 - L1PB4 LINE L1 -266 5890 5875 1001 78 16 0 chr15 52351158 52351286 -33344468 - L1PA10 LINE L1 -12 6156 6027 11358 173 26 21 chr15 52351286 52351380 -33344374 - L1PB4 LINE L1 -281 5875 5783 297 51 0 0 chr15 52351380 52351419 -33344335 + (CA)n Simple_repeat Simple_repeat 2 40 0 11358 173 26 21 chr15 52351419 52354290 -33341464 - L1PB4 LINE L1 -373 5783 2896 2380 110 0 0 chr15 52354387 52354696 -33341058 - AluSx SINE Alu -3 309 1 2711 139 51 29 chr15 52355227 52355715 -33340039 + L1MB8 LINE L1 5671 6169 -9 201 39 0 0 chr15 52356653 52356679 -33339075 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1631 225 128 16 chr15 52356992 52357445 -33338309 + MLT1D LTR MaLR 1 504 -1 498 288 151 23 chr15 52359784 52360003 -33335751 - L2 LINE L2 -56 3257 3011 2459 51 3 0 chr15 52361473 52361766 -33333988 - AluY SINE Alu -16 295 2 1306 190 184 4 chr15 52363839 52364202 -33331552 + MER63 DNA MER1_type 10 1061 0 381 261 101 48 chr15 52364460 52364817 -33330937 + MLT1I LTR MaLR 72 407 -2 691 227 83 83 chr15 52365116 52365442 -33330312 - MLT1J LTR MaLR -183 328 3 1889 184 75 27 chr15 52365613 52365989 -33329765 - MSTD LTR MaLR -2 394 1 366 218 20 102 chr15 52366215 52366362 -33329392 + MIR SINE MIR 90 224 -38 249 159 0 0 chr15 52366375 52366419 -33329335 + (CTA)n Simple_repeat Simple_repeat 2 45 0 217 241 0 0 chr15 52367021 52367075 -33328679 - MIR SINE MIR -57 205 152 994 252 79 13 chr15 52367227 52367545 -33328209 - MLT1K LTR MaLR -5 583 245 1985 184 37 48 chr15 52367547 52368009 -33327745 + MER31B LTR ERV1 3 459 -7 422 277 134 0 chr15 52368247 52368359 -33327395 + MER5B DNA MER1_type 1 127 -51 11042 182 35 60 chr15 52368404 52368779 -33326975 + L1M2b LINE L1 1 384 -6824 1975 138 55 76 chr15 52368779 52369162 -33326592 - THE1C LTR MaLR 0 375 1 11042 182 35 60 chr15 52369162 52370635 -33325119 + L1M2b LINE L1 384 1891 -5317 2122 148 3 0 chr15 52370635 52370946 -33324808 + AluSx SINE Alu 1 312 0 11042 182 35 60 chr15 52370946 52371665 -33324089 + L1M2b LINE L1 1891 2626 -4582 2066 156 0 7 chr15 52371665 52371973 -33323781 + AluJb SINE Alu 1 306 -6 11042 182 35 60 chr15 52371973 52373356 -33322398 + L1M2b LINE L1 2626 4066 -3142 1833 187 52 72 chr15 52374227 52374676 -33321078 - L1ME3 LINE L1 -5 6157 5700 1758 188 0 3 chr15 52374676 52374969 -33320785 + AluJo SINE Alu 1 292 -20 2192 117 0 3 chr15 52374976 52375276 -33320478 + AluSg SINE Alu 1 299 -11 1474 147 0 17 chr15 52375275 52375507 -33320247 + AluSg/x SINE Alu 82 309 -3 * 1833 187 52 72 chr15 52375276 52375590 -33320164 - L1ME3 LINE L1 -468 5694 5628 25 65 0 0 chr15 52375658 52375704 -33320050 + AT_rich Low_complexity Low_complexity 1 46 0 397 247 52 0 chr15 52375870 52375967 -33319787 - L3 LINE CR1 -678 899 798 2223 109 0 10 chr15 52376473 52376777 -33318977 - AluSx SINE Alu -11 301 1 1281 329 61 19 chr15 52376804 52377431 -33318323 - L3 LINE CR1 -837 740 88 267 241 69 35 chr15 52378618 52378705 -33317049 + L1M3 LINE L1 5761 5850 -318 26 30 0 0 chr15 52378835 52378868 -33316886 + AT_rich Low_complexity Low_complexity 1 33 0 665 264 106 26 chr15 52378887 52379198 -33316556 - L1ME4a LINE L1 -185 5936 5601 5068 20 0 0 chr15 52379217 52379762 -33315992 - L1PA3 LINE L1 0 6155 5611 235 246 0 0 chr15 52380425 52380486 -33315268 - L1ME4a LINE L1 -1 6120 6060 485 286 58 22 chr15 52381499 52381775 -33313979 + L1ME4a LINE L1 5684 5969 -152 3341 58 26 79 chr15 52381910 52382379 -33313375 - MLT2A1 LTR ERVL 0 444 1 2292 92 0 3 chr15 52382409 52382702 -33313052 + AluSx SINE Alu 1 292 -20 750 301 69 17 chr15 52382740 52383160 -33312594 + LTR16B LTR ERVL 1 416 -48 3017 182 24 10 chr15 52383585 52384172 -33311582 + L1M2b LINE L1 4545 5139 -2069 3106 106 12 100 chr15 52384176 52384214 -33311540 + L1MA4A LINE L1 5792 5832 -471 2385 99 0 0 chr15 52384214 52384518 -33311236 + AluSx SINE Alu 1 304 -8 3106 106 12 100 chr15 52384518 52385038 -33310716 + L1MA4A LINE L1 5832 6301 -2 235 208 57 19 chr15 52385043 52385096 -33310658 - MER5B DNA MER1_type -123 55 1 434 260 10 0 chr15 52385731 52385835 -33309919 + MIR3 SINE MIR 77 181 -27 2303 106 6 0 chr15 52386806 52387117 -33308637 + AluSq SINE Alu 1 313 0 186 43 0 0 chr15 52387140 52387163 -33308591 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 194 267 58 81 chr15 52387310 52387396 -33308358 + L2 LINE L2 3158 3241 -31 1704 178 17 7 chr15 52389003 52389295 -33306459 + AluJb SINE Alu 1 295 -17 1933 155 3 0 chr15 52389451 52389742 -33306012 - AluSx SINE Alu -20 292 1 382 235 0 34 chr15 52389747 52389866 -33305888 + L1ME4a LINE L1 6003 6117 -4 2343 91 0 0 chr15 52390763 52391059 -33304695 - AluSg SINE Alu -14 296 1 881 227 7 0 chr15 52391159 52391313 -33304441 + FRAM SINE Alu 1 155 -11 22 35 0 0 chr15 52391461 52391490 -33304264 + AT_rich Low_complexity Low_complexity 1 29 0 517 277 123 47 chr15 52391745 52392153 -33303601 - L1ME4a LINE L1 -186 5935 5497 2152 223 96 26 chr15 52393307 52393696 -33302058 - MLT1E2 LTR MaLR 0 626 266 2051 127 0 32 chr15 52393696 52394011 -33301743 - AluSx SINE Alu -7 305 1 2152 223 96 26 chr15 52394011 52394083 -33301671 - MLT1E2 LTR MaLR -360 266 200 2075 141 0 0 chr15 52394083 52394387 -33301367 - AluSx SINE Alu -8 304 1 2152 223 96 26 chr15 52394387 52394507 -33301247 - MLT1E2 LTR MaLR -426 200 3 459 290 92 42 chr15 52395967 52396068 -33299686 + L2 LINE L2 3034 3128 -144 3877 104 6 4 chr15 52396068 52396578 -33299176 - MER9 LTR ERVK 0 511 1 459 290 92 42 chr15 52396578 52396693 -33299061 + L2 LINE L2 3128 3261 -11 205 345 121 44 chr15 52397851 52398208 -33297546 - L2 LINE L2 -551 2763 2348 2297 119 0 3 chr15 52398208 52398520 -33297234 - AluSq SINE Alu -2 311 1 205 345 121 44 chr15 52398520 52398709 -33297045 - L2 LINE L2 -966 2348 2175 184 125 0 0 chr15 52398717 52398749 -33297005 + L2 LINE L2 2941 2972 -300 382 229 123 25 chr15 52398762 52398884 -33296870 - MLT1H1 LTR MaLR 0 555 422 863 228 42 58 chr15 52398957 52399252 -33296502 - MLT1H1 LTR MaLR -290 265 14 1344 255 110 46 chr15 52399915 52400571 -33295183 + L1ME4a LINE L1 5423 6120 -1 183 222 56 37 chr15 52400938 52400992 -33294762 + MIR SINE MIR 93 147 -115 273 130 22 0 chr15 52401504 52401550 -33294204 + L2 LINE L2 3257 3303 -10 342 319 157 11 chr15 52402059 52402244 -33293510 + MIR SINE MIR 51 262 0 332 301 48 29 chr15 52402266 52402369 -33293385 + L2 LINE L2 3155 3259 -13 446 264 81 45 chr15 52402464 52402774 -33292980 - L1MC4 LINE L1 -167 7875 7555 1212 171 5 19 chr15 52402776 52402981 -33292773 + MER2 DNA MER2_type 1 202 -143 1073 271 18 31 chr15 52403062 52403679 -33292075 - L1MC5 LINE L1 -521 7498 7009 651 132 0 0 chr15 52404138 52404229 -33291525 + AluJb SINE Alu 198 288 -24 1767 177 0 22 chr15 52404455 52404772 -33290982 + AluJb SINE Alu 1 310 -2 2325 69 7 14 chr15 52406319 52406607 -33289147 + AluSq SINE Alu 16 301 -12 24 53 0 0 chr15 52406863 52406901 -33288853 + AT_rich Low_complexity Low_complexity 1 38 0 311 241 22 3 chr15 52407952 52408032 -33287722 + L1ME LINE L1 13 94 -5976 5315 160 26 35 chr15 52408215 52409890 -33285864 + L1P5 LINE L1 4129 5775 -376 1872 140 0 0 chr15 52409892 52410163 -33285591 + AluJo SINE Alu 12 282 -30 704 210 126 8 chr15 52410178 52410416 -33285338 + L1M4 LINE L1 2884 3149 -2997 1738 133 22 66 chr15 52410469 52410786 -33284968 + AluJo SINE Alu 1 303 -9 358 309 103 0 chr15 52410804 52410930 -33284824 + L1M4 LINE L1 3264 3402 -2744 1355 105 0 0 chr15 52410938 52411119 -33284635 + AluSg/x SINE Alu 121 301 -11 335 261 0 0 chr15 52411187 52411256 -33284498 + MER96 DNA MER1_type? 107 175 0 275 270 149 20 chr15 52411256 52411404 -33284350 - L1ME LINE L1 -471 5699 5533 2006 156 10 0 chr15 52411447 52411755 -33283999 - AluJb SINE Alu -1 311 1 1463 198 4 11 chr15 52411772 52412040 -33283714 - AluJo SINE Alu -46 266 1 1624 179 75 3 chr15 52412578 52412896 -33282858 - MER58B DNA MER1_type 0 341 1 2311 122 0 0 chr15 52413016 52413327 -33282427 - AluSq SINE Alu -2 311 1 1892 134 0 0 chr15 52413327 52413596 -33282158 - AluSx SINE Alu -6 306 38 376 274 90 46 chr15 52413597 52413812 -33281942 - L1MEc LINE L1 -4755 1809 1571 2155 121 13 0 chr15 52414421 52414728 -33281026 - AluSx SINE Alu -1 311 1 1683 206 66 61 chr15 52414949 52415494 -33280260 - L1M4 LINE L1 -3304 2842 2295 824 230 53 34 chr15 52415491 52415756 -33279998 - L1ME1 LINE L1 -7 6159 5890 * 1495 173 48 18 chr15 52415757 52416029 -33279725 - AluJo SINE Alu -30 282 3 2103 134 0 0 chr15 52416082 52416373 -33279381 - AluSx SINE Alu -21 291 1 1109 214 63 0 chr15 52416517 52416723 -33279031 - MER20 DNA MER1_type 0 219 1 2637 132 54 7 chr15 52417368 52417794 -33277960 - L1MB4 LINE L1 -3 6177 5732 247 130 0 0 chr15 52418134 52418180 -33277574 + Alu SINE Alu 255 300 0 2210 93 0 13 chr15 52418202 52418504 -33277250 + AluSq SINE Alu 1 298 -15 475 47 0 0 chr15 52418567 52418631 -33277123 + AluY SINE Alu 245 308 -2 2048 111 30 0 chr15 52418961 52419259 -33276495 - AluSg SINE Alu -3 307 1 559 303 45 5 chr15 52419283 52419481 -33276273 + L1ME4a LINE L1 5621 5826 -295 434 126 46 23 chr15 52419492 52419579 -33276175 + LTR9 LTR ERV1 441 529 -83 1513 169 59 7 chr15 52420017 52420289 -33275465 + AluJb SINE Alu 11 296 -16 2307 61 7 0 chr15 52420337 52420664 -33275090 - AluY SINE Alu 0 329 1 243 224 52 17 chr15 52420790 52420848 -33274906 + L2 LINE L2 3254 3313 0 524 291 7 0 chr15 52421125 52421273 -33274481 - L1MB7 LINE L1 -2 6182 6034 989 216 56 44 chr15 52421284 52421603 -33274151 - L1MB7 LINE L1 -533 5633 5311 1028 153 19 0 chr15 52421633 52421790 -33273964 - AluJo SINE Alu -104 208 49 25 31 0 0 chr15 52422078 52422110 -33273644 + AT_rich Low_complexity Low_complexity 1 32 0 384 293 22 57 chr15 52422116 52422242 -33273512 - L1ME1 LINE L1 -342 5828 5708 2120 109 14 0 chr15 52422242 52422535 -33273219 + AluSc SINE Alu 2 298 -11 384 293 22 57 chr15 52422535 52422551 -33273203 - L1ME1 LINE L1 -462 5708 5693 388 232 0 0 chr15 52422602 52422671 -33273083 + MER96 DNA MER1_type? 107 175 0 305 257 149 20 chr15 52422671 52422819 -33272935 - L1ME1 LINE L1 -471 5699 5533 2075 146 10 0 chr15 52422862 52423170 -33272584 - AluJb SINE Alu -1 311 1 1444 186 7 19 chr15 52423187 52423456 -33272298 - AluJo SINE Alu -46 266 1 1624 179 75 3 chr15 52423994 52424312 -33271442 - MER58B DNA MER1_type 0 341 1 2311 122 0 0 chr15 52424432 52424743 -33271011 - AluSq SINE Alu -2 311 1 1892 134 0 0 chr15 52424743 52425012 -33270742 - AluSx SINE Alu -6 306 38 761 156 0 16 chr15 52424743 52424863 -33270891 - AluSg/x SINE Alu -6 304 185 376 274 90 46 chr15 52425013 52425228 -33270526 - L1MEc LINE L1 -4755 1809 1571 2200 120 10 0 chr15 52425837 52426145 -33269609 - AluSx SINE Alu -1 311 1 1683 206 66 61 chr15 52426367 52426912 -33268842 - L1M4 LINE L1 -3304 2842 2295 824 230 53 34 chr15 52426909 52427174 -33268580 - L1ME1 LINE L1 -7 6159 5890 * 1495 173 48 18 chr15 52427175 52427447 -33268307 - AluJo SINE Alu -30 282 3 2103 134 0 0 chr15 52427500 52427791 -33267963 - AluSx SINE Alu -21 291 1 1109 214 63 0 chr15 52427935 52428141 -33267613 - MER20 DNA MER1_type 0 219 1 2637 132 54 7 chr15 52428786 52429212 -33266542 - L1MB4 LINE L1 -3 6177 5732 217 347 73 8 chr15 52429445 52429569 -33266185 - L3 LINE CR1 -9 1568 1437 217 333 50 10 chr15 52429585 52429684 -33266070 + L2 LINE L2 1774 1876 -1438 1546 116 18 5 chr15 52429718 52429942 -33265812 - AluSq SINE Alu -86 227 1 3085 211 38 45 chr15 52430026 52430504 -33265250 - L1ME2 LINE L1 -18 6146 5666 2175 120 0 0 chr15 52430504 52430796 -33264958 - AluSg SINE Alu -18 292 1 3085 211 38 45 chr15 52430796 52431418 -33264336 - L1ME2 LINE L1 -498 5666 5071 1891 236 68 34 chr15 52431510 52432099 -33263655 - L1ME3A LINE L1 0 6170 5562 2270 81 0 34 chr15 52432408 52432704 -33263050 - AluSc SINE Alu -23 286 1 433 262 19 0 chr15 52432824 52432931 -33262823 + MIR SINE MIR 43 151 -57 392 199 24 141 chr15 52433295 52433361 -33262393 + LTR33A LTR ERVL 2 74 -449 2743 10 0 13 chr15 52433361 52433669 -33262085 - AluYa5 SINE Alu -7 304 1 392 199 24 141 chr15 52433669 52433808 -33261946 + LTR33A LTR ERVL 74 183 -340 * 505 227 153 11 chr15 52433790 52433966 -33261788 + LTR33A LTR ERVL 323 523 0 258 217 26 21 chr15 52434159 52434235 -33261519 - MIR SINE MIR -81 127 50 1874 169 0 14 chr15 52435156 52435486 -33260268 + AluSx SINE Alu 1 312 0 318 239 101 9 chr15 52435493 52435602 -33260152 - MIR SINE MIR 0 262 144 * 903 223 58 31 chr15 52435597 52435857 -33259897 + L2 LINE L2 3047 3313 0 1872 129 35 7 chr15 52436146 52436432 -33259322 - AluJb SINE Alu -7 305 12 2117 127 0 0 chr15 52436692 52436992 -33258762 - AluY SINE Alu -9 302 3 25 0 0 0 chr15 52437387 52437412 -33258342 + AT_rich Low_complexity Low_complexity 1 25 0 774 184 0 8 chr15 52437412 52437537 -33258217 - FLAM_C SINE Alu -17 126 3 1825 169 3 3 chr15 52437729 52438037 -33257717 - AluSx SINE Alu -4 308 1 2279 95 0 3 chr15 52438529 52438824 -33256930 - AluSc SINE Alu -15 294 1 4269 62 64 51 chr15 52438858 52439885 -33255869 + MER11A LTR ERVK 1 1266 0 250 241 46 46 chr15 52440502 52440589 -33255165 - MLT1I LTR MaLR -34 375 289 282 191 103 71 chr15 52440710 52440754 -33255000 - L1MC/D LINE L1 -2328 5480 5439 2285 109 7 3 chr15 52440754 52441058 -33254696 - AluSg SINE Alu -5 305 1 282 191 103 71 chr15 52441058 52441139 -33254615 - L1MC/D LINE L1 -2369 5439 5351 2180 97 10 39 chr15 52441348 52441659 -33254095 - AluSq SINE Alu -11 302 1 2340 81 0 3 chr15 52441712 52442007 -33253747 - AluSp SINE Alu -19 294 1 719 213 165 21 chr15 52442105 52442293 -33253461 - MER58C DNA MER1_type 0 215 1 2274 110 0 3 chr15 52442426 52442726 -33253028 - AluSg SINE Alu -11 299 1 3274 97 109 56 chr15 52442956 52443562 -33252192 - Tigger3b DNA MER2_type 0 1232 595 923 142 0 34 chr15 52443562 52443710 -33252044 - FLAM_C SINE Alu 0 143 1 315 125 14 14 chr15 52443710 52443782 -33251972 - Tigger3b DNA MER2_type -634 598 527 402 74 0 0 chr15 52443870 52443924 -33251830 + (CA)n Simple_repeat Simple_repeat 2 55 0 2751 146 74 10 chr15 52443924 52444409 -33251345 - Tigger3b DNA MER2_type -712 519 4 2355 112 0 0 chr15 52444776 52445081 -33250673 - AluSx SINE Alu -7 305 1 189 246 0 98 chr15 52446290 52446332 -33249422 + L2 LINE L2 3215 3251 -21 2116 143 2 101 chr15 52446332 52446737 -33249017 + MER47A DNA MER2_type 1 365 -1 189 246 0 98 chr15 52446737 52446755 -33248999 + L2 LINE L2 3251 3269 -3 633 288 118 19 chr15 52447479 52447851 -33247903 - HAL1 LINE L1 -845 1662 1254 525 253 106 80 chr15 52448014 52448315 -33247439 - MLT1J LTR MaLR -202 309 1 2134 111 0 0 chr15 52448425 52448704 -33247050 - AluSx SINE Alu -33 279 1 360 313 69 37 chr15 52448704 52448934 -33246820 - L1MEd LINE L1 -1329 1161 878 250 241 0 35 chr15 52449242 52449300 -33246454 - L2 LINE L2 -25 3247 3192 556 262 36 12 chr15 52449407 52449575 -33246179 - L2 LINE L2 -962 2352 2181 1654 147 66 7 chr15 52449822 52450095 -33245659 - AluJo SINE Alu -13 299 11 2212 109 0 3 chr15 52450305 52450599 -33245155 - AluSg SINE Alu -9 301 9 25 51 0 0 chr15 52450600 52450639 -33245115 + AT_rich Low_complexity Low_complexity 1 39 0 21 89 0 0 chr15 52450651 52450707 -33245047 + AT_rich Low_complexity Low_complexity 1 56 0 1636 149 29 45 chr15 52450758 52451067 -33244687 + AluJo SINE Alu 1 304 -8 251 326 135 0 chr15 52451149 52451287 -33244467 - MIR SINE MIR -61 147 45 403 234 101 37 chr15 52451698 52451916 -33243838 + L1MC5 LINE L1 7544 7775 -186 477 301 57 6 chr15 52452049 52452225 -33243529 + MIR SINE MIR 75 259 -3 952 193 58 14 chr15 52452555 52452762 -33242992 - MER58A DNA MER1_type 0 224 9 21 0 0 0 chr15 52453805 52453826 -33241928 + AT_rich Low_complexity Low_complexity 1 21 0 231 279 59 0 chr15 52454563 52454631 -33241123 + L2 LINE L2 3193 3264 -49 394 252 140 88 chr15 52455356 52455597 -33240157 - MLT1J LTR MaLR -51 460 233 198 0 0 0 chr15 52455597 52455619 -33240135 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 225 0 0 0 chr15 52455618 52455643 -33240111 + (GA)n Simple_repeat Simple_repeat 2 26 0 394 252 140 88 chr15 52455619 52455643 -33240111 - MLT1J LTR MaLR -278 233 212 1658 155 18 39 chr15 52455643 52455927 -33239827 - AluJo SINE Alu -34 278 1 394 252 140 88 chr15 52455927 52456081 -33239673 - MLT1J LTR MaLR -299 212 3 234 0 0 0 chr15 52456158 52456184 -33239570 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 339 240 0 40 chr15 52456251 52456426 -33239328 + CT-rich Low_complexity Low_complexity 3 170 0 1977 116 0 0 chr15 52456440 52456715 -33239039 - AluSx SINE Alu -37 275 1 1973 149 7 0 chr15 52458522 52458817 -33236937 + AluJb SINE Alu 1 297 -15 225 0 0 0 chr15 52459466 52459491 -33236263 + (T)n Simple_repeat Simple_repeat 1 25 0 2385 96 3 0 chr15 52459552 52459854 -33235900 - AluSp SINE Alu -10 303 1 2664 38 0 10 chr15 52460299 52460613 -33235141 + AluY SINE Alu 1 311 0 1759 156 35 3 chr15 52460620 52460902 -33234852 + AluJo SINE Alu 2 292 -20 279 0 0 0 chr15 52461371 52461402 -33234352 + (T)n Simple_repeat Simple_repeat 1 31 0 2610 185 37 37 chr15 52462943 52463479 -33232275 - MER74A LTR ERVL -6 552 17 609 237 0 9 chr15 52463482 52463596 -33232158 + FLAM_A SINE Alu 4 116 -17 5591 111 86 0 chr15 52463601 52464532 -33231222 - L1PA13 LINE L1 -4 6159 5176 198 309 41 21 chr15 52464734 52464831 -33230923 - L2 LINE L2 -443 2871 2773 2111 66 4 4 chr15 52466544 52466800 -33228954 - AluSc SINE Alu -9 300 45 208 333 101 30 chr15 52468814 52468913 -33226841 - L3 LINE CR1 -14 1563 1458 190 0 32 32 chr15 52468969 52469000 -33226754 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 215 335 128 47 chr15 52469398 52469525 -33226229 - L2 LINE L2 -946 2368 2253 1750 174 14 3 chr15 52469525 52469813 -33225941 + AluJo SINE Alu 1 291 -21 215 335 128 47 chr15 52469813 52470067 -33225687 - L2 LINE L2 -1061 2253 1956 * 506 232 179 0 chr15 52470046 52470197 -33225557 - MIR SINE MIR -70 192 15 258 267 17 0 chr15 52470913 52470973 -33224781 + L1ME LINE L1 13 73 -5997 5659 149 24 34 chr15 52471176 52472851 -33222903 + L1P5 LINE L1 4129 5775 -376 1872 140 0 0 chr15 52472853 52473124 -33222630 + AluJo SINE Alu 12 282 -30 771 225 234 44 chr15 52473139 52473430 -33222324 + L1M4 LINE L1 2884 3118 -3028 1738 133 22 66 chr15 52473430 52473747 -33222007 + AluJo SINE Alu 1 303 -9 771 225 234 44 chr15 52473747 52473891 -33221863 + L1M4 LINE L1 3118 3402 -2744 1329 97 5 5 chr15 52473899 52474085 -33221669 + AluSg/x SINE Alu 119 304 -6 1163 240 76 30 chr15 52474085 52474547 -33221207 + L1M4 LINE L1 3436 3918 -2228 1648 159 7 37 chr15 52474553 52474849 -33220905 - AluSx SINE Alu -20 292 6 333 167 0 0 chr15 52475017 52475095 -33220659 + GA-rich Low_complexity Low_complexity 1 78 0 2696 193 18 24 chr15 52475095 52475602 -33220152 - MLT2B3 LTR ERVL -50 504 1 5072 252 88 25 chr15 52475607 52476055 -33219699 - L1MEc LINE L1 -3890 2325 1906 2093 106 57 0 chr15 52476055 52476338 -33219416 + AluSq SINE Alu 1 299 -14 5072 252 88 25 chr15 52476338 52478038 -33217716 - L1MEc LINE L1 -4309 1906 78 646 232 60 6 chr15 52478193 52478361 -33217393 + MIR SINE MIR 31 207 -55 561 243 52 52 chr15 52479139 52479312 -33216442 - MLT1J2 LTR MaLR -14 436 264 650 290 73 16 chr15 52480207 52480455 -33215299 - MIR SINE MIR 0 262 1 1498 157 98 8 chr15 52480798 52481053 -33214701 + AluJb SINE Alu 5 282 -30 281 292 0 0 chr15 52482092 52482157 -33213597 + MIR3 SINE MIR 110 174 -34 1451 224 73 48 chr15 52482351 52482789 -33212965 + LTR16A1 LTR ERVL 4 452 -5 875 254 35 21 chr15 52483387 52483671 -33212083 + L2 LINE L2 1624 1911 -1403 361 297 0 9 chr15 52483694 52483805 -33211949 - MER81 DNA DNA -1 113 4 2008 134 0 20 chr15 52483843 52484148 -33211606 - AluJo SINE Alu -13 299 1 644 228 8 27 chr15 52484189 52484376 -33211378 - L1MA10 LINE L1 -2 6332 5987 23 97 0 0 chr15 52484540 52484612 -33211142 + AT_rich Low_complexity Low_complexity 1 72 0 829 230 0 6 chr15 52484631 52484805 -33210949 - MLT1F1 LTR MaLR 0 567 395 816 218 8 25 chr15 52484821 52485009 -33210745 - MLT1E LTR MaLR -363 179 1 4476 208 45 9 chr15 52485012 52486751 -33209003 - L1ME1 LINE L1 -190 6045 4249 2167 213 20 94 chr15 52486747 52487111 -33208643 - L1ME1 LINE L1 -2329 3886 3611 * 1933 149 0 20 chr15 52487111 52487407 -33208347 - AluJo SINE Alu -22 290 1 2167 213 20 94 chr15 52487407 52487840 -33207914 - L1ME1 LINE L1 -2604 3611 3148 * 6421 52 3 3 chr15 52487810 52488593 -33207161 - L1PA6 LINE L1 -2 6221 5439 568 158 28 139 chr15 52488592 52488807 -33206947 - L1ME1 LINE L1 -3034 3181 2991 * 711 286 24 5 chr15 52488803 52489013 -33206741 - L1ME1 LINE L1 -6067 329 116 2193 114 0 3 chr15 52489033 52489332 -33206422 - AluSx SINE Alu -14 298 1 487 311 26 43 chr15 52489339 52489641 -33206113 + L1M4 LINE L1 3541 3837 -2309 395 280 163 5 chr15 52489677 52489844 -33205910 - L1MC4a LINE L1 -1582 6226 6087 2137 113 0 35 chr15 52489844 52490155 -33205599 - AluSx SINE Alu -12 300 1 395 280 163 5 chr15 52490155 52490373 -33205381 - L1MC4a LINE L1 -1721 6087 5780 1960 136 12 41 chr15 52490374 52490719 -33205035 - MER46B DNA MER2_type -1 235 26 1635 228 81 23 chr15 52490719 52491275 -33204479 - L1MC4a LINE L1 -747 5399 5196 324 269 33 36 chr15 52491444 52491554 -33204200 - MLT1L LTR MaLR -310 201 110 1712 131 34 54 chr15 52491774 52492071 -33203683 - AluJb SINE Alu -21 291 1 407 327 142 26 chr15 52492130 52492482 -33203272 + L3 LINE CR1 1052 1444 -133 648 203 53 43 chr15 52492648 52492835 -33202919 - LTR33A LTR ERVL 0 523 335 307 260 106 16 chr15 52492954 52493077 -33202677 - LTR33A LTR ERVL -385 138 5 558 259 44 88 chr15 52493151 52493198 -33202556 - LTR16A1 LTR ERVL -12 445 397 1888 138 0 74 chr15 52493198 52493523 -33202231 - AluSx SINE Alu -10 302 2 558 259 44 88 chr15 52493523 52493908 -33201846 - LTR16A1 LTR ERVL -60 397 32 1128 181 0 20 chr15 52494172 52494371 -33201383 + AluJb SINE Alu 1 195 -117 210 272 252 10 chr15 52495509 52495612 -33200142 - MER5A DNA MER1_type -22 167 40 * 313 276 0 11 chr15 52495553 52495640 -33200114 + MER5A DNA MER1_type 104 189 0 2233 96 3 0 chr15 52496661 52496968 -33198786 + AluSx SINE Alu 1 308 0 416 266 106 35 chr15 52497370 52497596 -33198158 - MIR SINE MIR -8 254 13 2425 77 3 0 chr15 52497661 52497958 -33197796 - AluSq SINE Alu -11 302 5 902 318 67 21 chr15 52498145 52498714 -33197040 + L2 LINE L2 1699 2293 -1021 1119 198 52 4 chr15 52498721 52498969 -33196785 - MER58B DNA MER1_type -1 340 81 591 183 229 0 chr15 52498977 52499108 -33196646 - MER58 DNA MER1_type -179 162 2 249 329 73 27 chr15 52499122 52499341 -33196413 + L2 LINE L2 2307 2535 -779 2365 108 0 3 chr15 52499377 52499691 -33196063 - AluSq SINE Alu 0 313 1 939 193 57 72 chr15 52499721 52500053 -33195701 + L2 LINE L2 2987 3313 0 224 205 282 0 chr15 52500250 52500328 -33195426 + MER5B DNA MER1_type 79 178 0 200 268 195 0 chr15 52501153 52501235 -33194519 + L2 LINE L2 3178 3275 -38 279 286 126 8 chr15 52502397 52502516 -33193238 + L2 LINE L2 3181 3313 0 1177 256 127 28 chr15 52502519 52502634 -33193120 + MLT1F1 LTR MaLR 1 103 -464 1743 202 34 8 chr15 52502634 52502990 -33192764 + MLT1A1 LTR MaLR 1 365 0 1177 256 127 28 chr15 52502990 52503385 -33192369 + MLT1F1 LTR MaLR 103 559 -8 282 116 0 0 chr15 52503532 52503575 -33192179 + (CA)n Simple_repeat Simple_repeat 2 44 0 523 125 9 98 chr15 52504893 52504974 -33190780 - Tigger5 DNA MER2_type 0 2323 2253 2510 88 0 0 chr15 52504974 52505280 -33190474 + AluSg SINE Alu 1 306 -4 523 125 9 98 chr15 52505280 52505310 -33190444 - Tigger5 DNA MER2_type -70 2253 2222 264 208 19 0 chr15 52505302 52505355 -33190399 - Tigger5 DNA MER2_type -2268 55 2 * 498 75 0 0 chr15 52505480 52505547 -33190207 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 417 354 78 19 chr15 52506584 52507152 -33188602 + L2 LINE L2 1561 2161 -1153 622 243 9 81 chr15 52507206 52507371 -33188383 - MLT1K LTR MaLR -5 583 436 2389 129 22 0 chr15 52507371 52507727 -33188027 - THE1B LTR MaLR 0 364 1 622 243 9 81 chr15 52507727 52507783 -33187971 - MLT1K LTR MaLR -152 436 378 244 293 85 0 chr15 52507983 52508065 -33187689 - MLT1K LTR MaLR -462 126 38 1921 165 99 19 chr15 52508349 52508773 -33186981 + MLT1C LTR MaLR 1 458 -9 1672 133 4 43 chr15 52508817 52509095 -33186659 + AluJo SINE Alu 36 302 -10 592 316 67 29 chr15 52509830 52510206 -33185548 + L2 LINE L2 2339 2728 -586 280 264 0 0 chr15 52510452 52510524 -33185230 + L2 LINE L2 2904 2975 -339 335 242 46 0 chr15 52510856 52510932 -33184822 + MER91B DNA MER1_type 2 81 -59 1479 222 92 100 chr15 52512634 52513265 -33182489 - MLT1E2 LTR MaLR 0 626 1 450 0 0 0 chr15 52514914 52514964 -33180790 + (CA)n Simple_repeat Simple_repeat 1 50 0 270 268 42 0 chr15 52515060 52515131 -33180623 - MER5A DNA MER1_type -63 126 53 21 36 0 0 chr15 52515371 52515399 -33180355 + AT_rich Low_complexity Low_complexity 1 28 0 2389 119 91 8 chr15 52515582 52515977 -33179777 - MSTA LTR MaLR 0 428 1 628 294 76 5 chr15 52516086 52516297 -33179457 + L2 LINE L2 2866 3091 -181 2433 87 0 0 chr15 52516326 52516624 -33179130 - AluSc SINE Alu -11 298 1 213 305 114 9 chr15 52516879 52516984 -33178770 - L2 LINE L2 -218 3054 2939 1880 172 24 91 chr15 52517095 52517589 -33178165 + MLT1C LTR MaLR 7 467 0 1636 197 116 32 chr15 52518140 52518606 -33177148 + MLT1D LTR MaLR 1 505 0 321 244 35 35 chr15 52519498 52519613 -33176141 + MIR SINE MIR 43 157 -105 3565 210 36 32 chr15 52519772 52520053 -33175701 - L1ME1 LINE L1 -4 6162 5884 1847 185 0 0 chr15 52520053 52520350 -33175404 - AluJo SINE Alu -15 297 1 3565 210 36 32 chr15 52520350 52521504 -33174250 - L1ME1 LINE L1 -282 5884 4727 2063 119 67 31 chr15 52521507 52522036 -33173718 + MER51A LTR ERV1 1 634 0 320 185 0 15 chr15 52522036 52522101 -33173653 - L1ME1 LINE L1 -1420 4726 4663 2592 220 70 46 chr15 52522124 52522931 -33172823 - L1ME1 LINE L1 -1462 4684 3853 1852 170 11 0 chr15 52522931 52523214 -33172540 - AluJb SINE Alu -22 290 5 2592 220 70 46 chr15 52523214 52523289 -33172465 - L1ME1 LINE L1 -2293 3853 3781 1312 134 34 14 chr15 52523289 52523600 -33172154 - MLT1A1 LTR MaLR 0 365 2 3544 215 89 24 chr15 52523745 52524523 -33171231 - L1ME1 LINE L1 -2454 3692 2728 2256 98 3 7 chr15 52524523 52524820 -33170934 - AluSx SINE Alu -16 296 1 3544 215 89 24 chr15 52524820 52525278 -33170476 - L1ME1 LINE L1 -3418 2728 2301 1549 179 97 39 chr15 52525285 52525720 -33170034 + MLT1C LTR MaLR 6 465 -2 461 168 0 30 chr15 52525789 52525920 -33169834 + G-rich Low_complexity Low_complexity 5 131 0 447 247 0 0 chr15 52526022 52526119 -33169635 + L1MC1 LINE L1 5967 6063 -270 260 372 55 11 chr15 52526450 52526633 -33169121 + L2 LINE L2 3119 3309 -4 1575 183 0 23 chr15 52526926 52527227 -33168527 - AluJo SINE Alu -18 294 1 2030 115 3 3 chr15 52527476 52527771 -33167983 + AluSq SINE Alu 1 295 -18 191 324 40 27 chr15 52528253 52528327 -33167427 - MER5A DNA MER1_type -14 175 101 * 407 279 66 22 chr15 52528275 52528411 -33167343 + MER5A DNA MER1_type 48 189 0 30 59 0 0 chr15 52528647 52528698 -33167056 + AT_rich Low_complexity Low_complexity 1 51 0 1423 190 61 98 chr15 52528742 52529332 -33166422 - MLT2A1 LTR ERVL 0 554 1 222 293 0 79 chr15 52530669 52530809 -33164945 + CT-rich Low_complexity Low_complexity 2 130 0 629 164 17 35 chr15 52531098 52531214 -33164540 - MER81 DNA DNA 0 114 1 233 274 53 32 chr15 52531978 52532073 -33163681 + MIR3 SINE MIR 91 187 -21 232 311 98 38 chr15 52532130 52532262 -33163492 - L2 LINE L2 -58 3255 3116 2130 104 3 19 chr15 52533176 52533492 -33162262 + AluSq SINE Alu 1 311 -2 2164 108 0 0 chr15 52533537 52533833 -33161921 + AluY SINE Alu 1 296 -15 254 341 16 8 chr15 52534009 52534138 -33161616 + (TTAGGG)n Simple_repeat Simple_repeat 3 132 0 405 340 63 0 chr15 52534515 52534706 -33161048 - MIR SINE MIR -28 234 32 492 178 25 59 chr15 52534901 52535019 -33160735 - MER106A DNA MER1_type 0 236 123 377 164 0 0 chr15 52535023 52535084 -33160670 - L1M4 LINE L1 -1903 4243 4183 462 183 58 83 chr15 52535097 52535217 -33160537 - MER106A DNA MER1_type -119 117 1 240 130 56 0 chr15 52535581 52535635 -33160119 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 486 123 14 0 chr15 52536045 52536118 -33159636 + AluS SINE Alu 1 74 -244 181 287 185 28 chr15 52536444 52536552 -33159202 + MIR SINE MIR 18 142 -66 5575 117 52 38 chr15 52536727 52538241 -33157513 + pTR5 LTR ERV1 741 2438 0 186 89 89 0 chr15 52538488 52538533 -33157221 + G-rich Low_complexity Low_complexity 3 51 0 636 199 23 0 chr15 52538752 52538883 -33156871 + MER94 DNA DNA 1 134 0 2075 118 0 0 chr15 52539206 52539503 -33156251 - AluSx SINE Alu -15 297 1 198 0 0 0 chr15 52540092 52540114 -33155640 + (T)n Simple_repeat Simple_repeat 1 22 0 1578 191 21 55 chr15 52540114 52540134 -33155620 - L1ME3 LINE L1 0 6162 6143 1433 201 24 70 chr15 52540134 52540517 -33155237 + MLT1A1 LTR MaLR 1 365 0 1578 191 21 55 chr15 52540517 52540571 -33155183 - L1ME3 LINE L1 -19 6143 6089 2167 108 3 0 chr15 52540571 52540876 -33154878 - AluSx SINE Alu -6 306 1 1578 191 21 55 chr15 52540876 52541182 -33154572 - L1ME3 LINE L1 -73 6089 5794 747 256 164 14 chr15 52541521 52541740 -33154014 - MIR SINE MIR -10 252 1 423 213 0 0 chr15 52542426 52542501 -33153253 - FLAM_A SINE Alu -59 83 9 482 222 0 7 chr15 52542502 52542655 -33153099 + (CA)n Simple_repeat Simple_repeat 2 153 0 1159 236 41 123 chr15 52542871 52543426 -33152328 + MER77 LTR ERV1 49 558 -47 465 200 113 0 chr15 52544196 52544311 -33151443 + MLT1A2 LTR MaLR 1 128 -246 238 233 0 0 chr15 52544312 52544355 -33151399 + L1 LINE L1 23 65 -7500 * 5999 141 53 36 chr15 52544351 52545382 -33150372 + L1 LINE L1 993 2029 -5536 458 208 75 17 chr15 52545382 52545502 -33150252 - MER63 DNA MER1_type -309 753 1 4693 203 30 7 chr15 52545566 52546647 -33149107 + L1 LINE L1 4091 5196 -2369 1667 130 10 27 chr15 52547472 52547772 -33147982 + AluJo SINE Alu 1 295 -17 277 179 96 0 chr15 52547805 52547887 -33147867 + MIR SINE MIR 59 145 -63 2259 57 0 60 chr15 52551419 52551737 -33144017 - AluY SINE Alu -12 299 1 24 0 0 0 chr15 52551897 52551921 -33143833 + AT_rich Low_complexity Low_complexity 1 24 0 2414 51 0 16 chr15 52553952 52554265 -33141489 - AluY SINE Alu -3 308 1 700 149 0 18 chr15 52554352 52554535 -33141219 - FLAM_C SINE Alu 0 186 6 1722 288 83 75 chr15 52554557 52554743 -33141011 - L1MEc LINE L1 -2787 3428 3245 1878 138 3 13 chr15 52554743 52555041 -33140713 - AluSx SINE Alu -13 299 5 1722 288 83 75 chr15 52555041 52555274 -33140480 - L1MEc LINE L1 -2970 3245 3015 717 109 87 7 chr15 52555274 52555412 -33140342 + L1MB3 LINE L1 6032 6180 -3 1722 288 83 75 chr15 52555412 52555531 -33140223 - L1MEc LINE L1 -3200 3015 2898 187 53 26 26 chr15 52555531 52555569 -33140185 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2086 97 0 0 chr15 52555570 52555848 -33139906 - AluSg SINE Alu -32 278 1 1722 288 83 75 chr15 52555848 52556288 -33139466 - L1MEc LINE L1 -3317 2898 2434 1872 165 0 10 chr15 52556288 52556597 -33139157 - AluJb SINE Alu -6 306 1 1722 288 83 75 chr15 52556597 52556695 -33139059 - L1MEc LINE L1 -3781 2434 2338 1801 224 122 37 chr15 52556697 52557403 -33138351 - HAL1 LINE L1 -45 2462 1697 511 229 137 6 chr15 52557451 52557634 -33138120 - MER69B DNA AcHobo -69 1157 951 2148 190 37 34 chr15 52557643 52557699 -33138055 - MLT2F LTR ERVL 0 663 609 348 24 0 0 chr15 52557699 52557740 -33138014 + (TC)n Simple_repeat Simple_repeat 2 42 0 2148 190 37 34 chr15 52557740 52558185 -33137569 - MLT2F LTR ERVL -54 609 96 2050 132 3 0 chr15 52558185 52558496 -33137258 + AluSx SINE Alu 1 312 0 2148 190 37 34 chr15 52558496 52558589 -33137165 - MLT2F LTR ERVL -567 96 5 1482 204 84 129 chr15 52558592 52559092 -33136662 - MER69B DNA AcHobo -1582 944 476 1871 157 0 3 chr15 52559092 52559391 -33136363 - AluJb SINE Alu -9 303 6 1482 204 84 129 chr15 52559391 52559512 -33136242 - MER69B DNA AcHobo -2050 476 351 456 261 109 80 chr15 52559508 52559760 -33135994 + MLT1H1 LTR MaLR 290 555 0 * 327 301 104 16 chr15 52559790 52559973 -33135781 - L1MEc LINE L1 -4086 2310 2112 1350 232 44 39 chr15 52560324 52560734 -33135020 + MER92A LTR ERV1 1 412 0 204 40 0 0 chr15 52560875 52560900 -33134854 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 236 226 0 0 chr15 52561866 52561919 -33133835 + L1MC/D LINE L1 5709 5761 -2047 272 27 27 0 chr15 52562626 52562663 -33133091 + (CAAT)n Simple_repeat Simple_repeat 4 41 0 3345 80 15 9 chr15 52564495 52564958 -33130796 - L1PA11 LINE L1 0 6174 5709 23 33 0 0 chr15 52564985 52565015 -33130739 + AT_rich Low_complexity Low_complexity 1 30 0 2085 116 3 22 chr15 52565414 52565732 -33130022 - AluSx SINE Alu 0 312 1 1486 199 86 48 chr15 52565734 52565838 -33129916 - L1ME1 LINE L1 -297 5869 5770 207 0 0 0 chr15 52565838 52565861 -33129893 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1486 199 86 48 chr15 52565861 52566173 -33129581 - L1ME1 LINE L1 -396 5770 5437 1817 153 4 0 chr15 52566521 52566851 -33128903 - AluJo SINE Alu 0 331 1 328 313 30 15 chr15 52566876 52567007 -33128747 + L2 LINE L2 3180 3312 -1 1914 108 18 4 chr15 52567466 52567783 -33127971 - AluSg SINE Alu 0 321 1 285 309 65 22 chr15 52567859 52567998 -33127756 + MIR SINE MIR 20 164 -98 712 203 8 0 chr15 52567999 52568132 -33127622 + FRAM SINE Alu 35 168 -8 900 216 58 65 chr15 52568670 52568838 -33126916 + MLT1A1 LTR MaLR 1 169 -196 2285 89 7 0 chr15 52568838 52569140 -33126614 + AluSq SINE Alu 1 304 -9 900 216 58 65 chr15 52569140 52569403 -33126351 + MLT1A1 LTR MaLR 169 365 0 309 333 109 12 chr15 52569429 52569594 -33126160 + L3 LINE CR1 1392 1572 -5 255 230 53 26 chr15 52570094 52570207 -33125547 + HAL1b LINE L1 729 844 -504 1188 163 65 114 chr15 52570406 52570458 -33125296 - MLT1C LTR MaLR 0 467 414 1947 126 4 0 chr15 52570458 52570736 -33125018 + AluSx SINE Alu 1 279 -33 207 0 0 0 chr15 52570739 52570762 -33124992 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1188 163 65 114 chr15 52570762 52571030 -33124724 - MLT1C LTR MaLR -55 412 159 765 148 42 120 chr15 52571020 52571151 -33124603 + MER115 DNA AcHobo 495 635 -58 * 1943 108 3 99 chr15 52571151 52571495 -33124259 + AluSq SINE Alu 1 311 -2 2109 95 3 0 chr15 52571502 52571813 -33123941 + AluSp SINE Alu 1 312 0 765 148 42 120 chr15 52571813 52571888 -33123866 + MER115 DNA AcHobo 641 693 0 224 287 11 11 chr15 52572578 52572665 -33123089 + CT-rich Low_complexity Low_complexity 2 88 0 852 293 94 21 chr15 52573335 52573769 -33121985 - L2 LINE L2 0 3313 2848 187 270 0 0 chr15 52574310 52574347 -33121407 + G-rich Low_complexity Low_complexity 1 37 0 3198 148 19 49 chr15 52574482 52575111 -33120643 + L1MB3 LINE L1 5570 6179 -4 29 47 0 0 chr15 52575352 52575395 -33120359 + AT_rich Low_complexity Low_complexity 1 43 0 639 140 0 0 chr15 52575871 52575964 -33119790 - FLAM_A SINE Alu -16 126 34 2117 100 0 0 chr15 52575974 52576287 -33119467 - AluSc SINE Alu 0 313 1 527 306 25 13 chr15 52576393 52576550 -33119204 + MIR SINE MIR 64 222 -40 324 85 0 0 chr15 52577355 52577402 -33118352 - FLAM_A SINE Alu -86 47 1 401 356 20 69 chr15 52577413 52577670 -33118084 - L1M4 LINE L1 -1023 5123 4892 2228 113 7 7 chr15 52577670 52577972 -33117782 + AluSx SINE Alu 1 302 -10 401 356 20 69 chr15 52577972 52578121 -33117633 - L1M4 LINE L1 -1254 4892 4737 684 190 15 0 chr15 52578159 52578296 -33117458 + AluJb SINE Alu 1 139 -173 305 119 6 32 chr15 52578319 52578388 -33117366 + Alu SINE Alu 2 45 -257 221 302 90 39 chr15 52578886 52579059 -33116695 + MIR SINE MIR 30 207 -55 2571 66 0 3 chr15 52580180 52580485 -33115269 + AluY SINE Alu 1 304 -7 682 156 32 6 chr15 52581327 52581577 -33114177 - AluJb SINE Alu -5 307 1 645 154 9 0 chr15 52581737 52581847 -33113907 - AluJb SINE Alu -10 302 192 1285 123 0 6 chr15 52583263 52583442 -33112312 + AluSg/x SINE Alu 112 289 -23 1403 272 79 10 chr15 52584533 52585082 -33110672 + HAL1b LINE L1 230 735 -613 1057 105 0 0 chr15 52585174 52585307 -33110447 + AluSq/x SINE Alu 1 133 -179 2430 79 0 0 chr15 52585310 52585601 -33110153 + AluSg SINE Alu 1 291 -19 622 176 82 6 chr15 52585604 52585763 -33109991 + HAL1b LINE L1 936 1106 -242 635 312 138 33 chr15 52586360 52586815 -33108939 + MLT1K LTR MaLR 35 537 -51 186 43 0 0 chr15 52587243 52587266 -33108488 + (T)n Simple_repeat Simple_repeat 1 23 0 833 187 6 6 chr15 52587367 52587538 -33108216 - LTR54 LTR ERV1 -85 425 255 1284 130 16 11 chr15 52587538 52587722 -33108032 + AluY SINE Alu 1 185 -126 6202 147 228 25 chr15 52587752 52589158 -33106596 - pTR5 LTR ERV1 -5 2433 743 585 110 0 0 chr15 52589164 52589246 -33106508 + AluJb SINE Alu 209 290 -22 195 69 0 0 chr15 52589781 52589810 -33105944 + (CA)n Simple_repeat Simple_repeat 1 29 0 809 178 0 33 chr15 52590210 52590362 -33105392 + Tigger3(Golem) DNA MER2_type 1 147 -2882 * 2856 111 24 22 chr15 52590358 52590492 -33105262 + Tigger3(Golem) DNA MER2_type 2067 2199 -830 2061 104 79 0 chr15 52590492 52590772 -33104982 + AluSx SINE Alu 2 303 -9 2856 111 24 22 chr15 52590772 52591134 -33104620 + Tigger3(Golem) DNA MER2_type 2199 2564 -465 1544 102 0 5 chr15 52591135 52591331 -33104423 - AluSq SINE Alu -21 292 98 27 29 0 0 chr15 52591431 52591465 -33104289 + GC_rich Low_complexity Low_complexity 1 34 0 200 267 17 0 chr15 52594144 52594204 -33101550 + GA-rich Low_complexity Low_complexity 4 64 0 326 329 36 0 chr15 52594592 52594732 -33101022 + MIR SINE MIR 89 233 -29 377 60 0 0 chr15 52594927 52594977 -33100777 + AluSp/q SINE Alu 245 294 -9 366 317 43 51 chr15 52595267 52595617 -33100137 - HAL1b LINE L1 -627 721 375 1040 155 0 12 chr15 52595639 52595807 -33099947 - FRAM SINE Alu 0 166 1 1755 184 13 3 chr15 52595827 52596132 -33099622 - AluJo SINE Alu -4 308 1 360 290 23 112 chr15 52596180 52596246 -33099508 - HAL1 LINE L1 -1163 1344 1274 1921 154 37 17 chr15 52596246 52596545 -33099209 - AluSx SINE Alu -7 305 1 360 290 23 112 chr15 52596545 52596578 -33099176 - HAL1 LINE L1 -1233 1274 1240 2462 88 7 0 chr15 52596578 52596884 -33098870 - AluSg SINE Alu -2 308 1 360 290 23 112 chr15 52596884 52597042 -33098712 - HAL1 LINE L1 -1267 1240 1109 524 217 29 131 chr15 52597543 52597642 -33098112 - MER34B LTR ERV1 -2 583 476 2443 103 0 0 chr15 52597642 52597954 -33097800 + AluSx SINE Alu 1 312 0 524 217 29 131 chr15 52597954 52598167 -33097587 - MER34B LTR ERV1 -109 476 282 2114 155 25 39 chr15 52598168 52598574 -33097180 - MSTB LTR MaLR 0 426 27 411 184 27 71 chr15 52598749 52598884 -33096870 - MER34 LTR ERV1 -447 100 3 194 298 198 0 chr15 52599293 52599414 -33096340 - L2 LINE L2 -28 3244 3100 1030 189 5 0 chr15 52599582 52599773 -33095981 + Tigger3(Golem) DNA MER2_type 2837 3028 -1 257 336 15 36 chr15 52600041 52600178 -33095576 + MIR SINE MIR 127 260 -2 539 285 0 33 chr15 52600212 52600363 -33095391 - L2 LINE L2 0 3313 3168 918 169 0 7 chr15 52600387 52600535 -33095219 + FRAM SINE Alu 1 147 -29 318 235 0 0 chr15 52600540 52600621 -33095133 + (TA)n Simple_repeat Simple_repeat 2 82 0 228 86 0 0 chr15 52600620 52600655 -33095099 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 660 190 97 23 chr15 52600663 52600879 -33094875 - L2 LINE L2 -357 2957 2726 2023 189 30 54 chr15 52600882 52601423 -33094331 + MER89 LTR ERV1 1 528 -31 185 261 215 0 chr15 52601452 52601517 -33094237 - L2 LINE L2 -628 2686 2608 243 0 0 0 chr15 52601521 52601548 -33094206 + (A)n Simple_repeat Simple_repeat 1 27 0 301 214 131 0 chr15 52601548 52601632 -33094122 - L2 LINE L2 -685 2629 2535 649 259 55 10 chr15 52601640 52601841 -33093913 - L1MD2 LINE L1 -11 6348 6139 2765 219 26 80 chr15 52601876 52602539 -33093215 + MER21B LTR ERV1 5 702 -161 2184 94 7 7 chr15 52602539 52602850 -33092904 - AluSx SINE Alu 0 311 1 2597 61 0 0 chr15 52602851 52603146 -33092608 - AluSq SINE Alu -16 297 3 2765 219 26 80 chr15 52603146 52603256 -33092498 + MER21B LTR ERV1 701 739 -124 2290 114 3 0 chr15 52603330 52603629 -33092125 - AluSg SINE Alu -10 300 1 422 268 8 16 chr15 52603639 52603766 -33091988 - L1MD2 LINE L1 -226 6133 6008 1569 126 65 11 chr15 52603800 52604078 -33091676 + MSTA LTR MaLR 136 428 0 1461 200 142 3 chr15 52604078 52604438 -33091316 - L1MD2 LINE L1 -366 5993 5584 396 191 24 0 chr15 52604440 52604524 -33091230 - L2 LINE L2 -777 2537 2452 271 200 0 18 chr15 52604705 52604760 -33090994 + L1ME1 LINE L1 18 71 -6352 1069 154 5 82 chr15 52604769 52604989 -33090765 - AluJb SINE Alu -105 207 5 723 147 83 0 chr15 52604990 52605147 -33090607 + L1ME1 LINE L1 64 233 -6190 373 254 52 45 chr15 52605160 52605294 -33090460 + L1ME1 LINE L1 357 491 -5932 332 220 77 22 chr15 52605507 52605598 -33090156 + L1ME1 LINE L1 820 915 -5508 253 339 92 0 chr15 52605700 52605809 -33089945 + L1ME1 LINE L1 949 1067 -5356 2738 224 64 23 chr15 52605826 52605864 -33089890 + L1ME1 LINE L1 3021 3056 -3885 2403 98 3 0 chr15 52605864 52606170 -33089584 + AluSx SINE Alu 1 307 -5 2738 224 64 23 chr15 52606170 52606834 -33088920 + L1ME1 LINE L1 3056 3758 -3183 5387 56 22 29 chr15 52606834 52607603 -33088151 - MER4E LTR ERV1 0 766 3 2738 224 64 23 chr15 52607603 52607645 -33088109 + L1ME1 LINE L1 3758 3797 -3144 1474 281 32 52 chr15 52607639 52608020 -33087734 + L1ME1 LINE L1 5850 6237 -724 * 1036 214 92 40 chr15 52608020 52608347 -33087407 - MER2 DNA MER2_type 0 344 1 1474 281 32 52 chr15 52608347 52608389 -33087365 + L1ME1 LINE L1 6237 6278 -683 1955 111 0 0 chr15 52608389 52608632 -33087122 + AluSc SINE Alu 1 243 -66 1474 281 32 52 chr15 52608632 52608820 -33086934 + L1ME1 LINE L1 6278 6468 -493 1875 185 0 0 chr15 52608820 52609123 -33086631 - AluJo SINE Alu -9 303 1 1474 281 32 52 chr15 52609123 52609331 -33086423 + L1ME1 LINE L1 6468 6679 -282 1918 125 54 0 chr15 52609331 52609610 -33086144 + AluSx SINE Alu 1 294 -18 2023 127 0 10 chr15 52609612 52609904 -33085850 + AluSg SINE Alu 1 289 -21 1474 281 32 52 chr15 52609904 52610225 -33085529 + L1ME1 LINE L1 6680 6945 -16 1906 114 24 54 chr15 52610227 52610524 -33085230 + AluJb SINE Alu 2 289 -23 2197 126 3 0 chr15 52610973 52611275 -33084479 + AluSx SINE Alu 1 303 -9 499 318 89 75 chr15 52611559 52612040 -33083714 - L1M4 LINE L1 -2393 3753 3266 1955 171 0 0 chr15 52612054 52612353 -33083401 - AluJb SINE Alu -13 299 1 936 216 15 10 chr15 52612638 52612842 -33082912 + MIR SINE MIR 45 249 -13 2269 95 14 0 chr15 52615040 52615334 -33080420 + AluSg SINE Alu 1 298 -12 2573 201 82 28 chr15 52615432 52616008 -33079746 + MER21B LTR ERV1 199 805 -58 304 251 127 47 chr15 52616114 52616273 -33079481 + L1ME1 LINE L1 4369 4514 -1632 2247 112 0 16 chr15 52616273 52616576 -33079178 - AluSc SINE Alu -11 298 1 304 251 127 47 chr15 52616576 52616691 -33079063 + L1ME1 LINE L1 4514 4665 -1481 1170 149 0 0 chr15 52616790 52616951 -33078803 + FAM SINE Alu 11 171 -14 506 272 35 17 chr15 52617243 52617569 -33078185 + L1MC4a LINE L1 5088 5428 -743 * 619 187 22 7 chr15 52617566 52617705 -33078049 + L1ME1 LINE L1 4864 5004 -1142 1581 214 4 0 chr15 52617705 52617986 -33077768 + AluJb SINE Alu 1 282 -30 657 215 23 0 chr15 52617999 52618129 -33077625 - FLAM_A SINE Alu 0 133 1 1531 223 167 43 chr15 52618129 52618818 -33076936 + L1ME1 LINE L1 5267 6099 -67 2219 130 0 0 chr15 52618818 52619118 -33076636 - AluSx SINE Alu 0 312 13 1531 223 167 43 chr15 52619118 52619194 -33076560 + L1ME1 LINE L1 6099 6164 -2 180 0 0 0 chr15 52619197 52619217 -33076537 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 590 156 70 31 chr15 52619280 52619408 -33076346 + AluJ SINE Alu 1 133 -169 712 164 0 0 chr15 52619417 52619545 -33076209 + AluJ SINE Alu 185 312 0 1385 269 83 41 chr15 52619558 52620174 -33075580 + L1MC4a LINE L1 5419 6060 -1748 1837 148 10 21 chr15 52620237 52620527 -33075227 + AluJo SINE Alu 1 287 -25 2122 136 10 3 chr15 52620551 52620845 -33074909 + AluSx SINE Alu 1 296 -16 210 367 67 0 chr15 52621098 52621218 -33074536 + L2 LINE L2 2928 3055 -217 217 365 0 0 chr15 52623983 52624068 -33071686 + MIR SINE MIR 154 238 -24 202 149 64 0 chr15 52625183 52625230 -33070524 - L2 LINE L2 -4 3268 3219 414 292 137 19 chr15 52625400 52625722 -33070032 - L2 LINE L2 -337 2977 2618 216 322 180 8 chr15 52626018 52626279 -33069475 - L2 LINE L2 -1331 1983 1678 222 262 112 29 chr15 52626985 52627104 -33068650 + MIR SINE MIR 34 144 -64 401 331 7 14 chr15 52628757 52628896 -33066858 - MIR SINE MIR -123 139 2 267 287 0 46 chr15 52629074 52629161 -33066593 - MIR SINE MIR -72 136 54 210 305 133 38 chr15 52629495 52629600 -33066154 + MIR SINE MIR 50 164 -98 509 98 0 0 chr15 52630440 52630522 -33065232 + Alu SINE Alu 230 311 0 24 32 0 0 chr15 52631698 52631729 -33064025 + GC_rich Low_complexity Low_complexity 1 31 0 1636 149 7 7 chr15 52631901 52632176 -33063578 + AluJo SINE Alu 1 275 -37 233 328 52 17 chr15 52632279 52632395 -33063359 + L2 LINE L2 3150 3269 -3 218 374 24 0 chr15 52633415 52633498 -33062256 + L2 LINE L2 2685 2769 -545 258 300 146 8 chr15 52633735 52633865 -33061889 + L2 LINE L2 3125 3272 0 180 0 0 0 chr15 52634289 52634309 -33061445 + (CCCCAG)n Simple_repeat Simple_repeat 2 21 0 261 207 17 0 chr15 52635021 52635079 -33060675 - MIR SINE MIR 0 262 204 2181 85 3 7 chr15 52635081 52635426 -33060328 - AluSg SINE Alu 0 310 1 937 151 25 0 chr15 52635446 52635605 -33060149 - L1MB4 LINE L1 -8 6172 6010 698 261 146 76 chr15 52635605 52636145 -33059609 - MER34C LTR ERV1 -4 581 4 579 196 0 0 chr15 52636151 52636253 -33059501 - L1MB4 LINE L1 -166 6014 5913 1435 120 24 6 chr15 52636253 52636500 -33059254 - MER51A LTR ERV1 0 640 398 1371 127 0 0 chr15 52636498 52636703 -33059051 - MER51A LTR ERV1 -429 205 1 * 1900 152 3 3 chr15 52636703 52637045 -33058709 - L1MB4 LINE L1 -264 5916 5575 191 303 101 11 chr15 52637096 52637185 -33058569 + L2 LINE L2 3158 3254 -18 558 275 116 5 chr15 52637998 52638205 -33057549 - L1ME LINE L1 -329 5792 5563 312 300 88 48 chr15 52638385 52638658 -33057096 - L1MC4a LINE L1 -1632 6176 5893 328 269 62 0 chr15 52638916 52639021 -33056733 - L1ME LINE L1 -747 5399 5284 2152 101 20 7 chr15 52639199 52639505 -33056249 - AluSx SINE Alu -2 310 1 271 236 0 42 chr15 52639544 52639559 -33056195 + MIR SINE MIR 184 198 -64 1245 160 135 77 chr15 52639559 52639670 -33056084 + MER2 DNA MER2_type 1 104 -240 1701 172 10 16 chr15 52639670 52639978 -33055776 - AluJb SINE Alu -2 310 5 1245 160 135 77 chr15 52639978 52640191 -33055563 + MER2 DNA MER2_type 104 344 0 271 236 0 42 chr15 52640191 52640247 -33055507 + MIR SINE MIR 198 252 -10 715 284 151 65 chr15 52640346 52640725 -33055029 - L1ME LINE L1 -2703 3443 3009 1968 110 17 3 chr15 52640725 52641015 -33054739 - AluSx SINE Alu -18 294 1 715 284 151 65 chr15 52641015 52641139 -33054615 - L1ME LINE L1 -3137 3009 2897 241 143 0 0 chr15 52641151 52641186 -33054568 + Alu SINE Alu 61 95 -207 1423 163 7 21 chr15 52641295 52641584 -33054170 + AluSx SINE Alu 28 312 0 656 167 0 68 chr15 52641732 52641864 -33053890 - FLAM_A SINE Alu -4 138 16 239 320 13 0 chr15 52642137 52642212 -33053542 + L2 LINE L2 3192 3267 -5 358 250 85 0 chr15 52642752 52642928 -33052826 - L1MC4a LINE L1 -1756 6052 5862 319 287 0 0 chr15 52642942 52643036 -33052718 - MIR SINE MIR -3 259 166 1002 280 41 3 chr15 52643055 52643348 -33052406 - L1MC4a LINE L1 -1949 5859 5556 1129 139 0 0 chr15 52643512 52643677 -33052077 - AluSg/x SINE Alu -3 309 145 257 143 24 0 chr15 52643774 52643816 -33051938 + MIR SINE MIR 12 54 -208 2480 192 18 12 chr15 52643822 52644316 -33051438 - MLT1D LTR MaLR -8 497 1 791 263 21 0 chr15 52644316 52644502 -33051252 + MIR SINE MIR 52 241 -21 2370 72 7 0 chr15 52644536 52644841 -33050913 + AluSp SINE Alu 1 307 -6 185 132 26 0 chr15 52644965 52645003 -33050751 + GA-rich Low_complexity Low_complexity 2 40 0 300 327 56 37 chr15 52645009 52645171 -33050583 + L1MC4a LINE L1 5725 5889 -1919 2379 63 3 0 chr15 52645186 52645488 -33050266 - AluSp SINE Alu -10 303 1 206 348 71 36 chr15 52645547 52645659 -33050095 + MIR SINE MIR 92 207 -55 225 301 72 36 chr15 52646810 52646893 -33048861 + MER91A DNA MER1_type 109 194 -2 224 278 0 0 chr15 52648430 52648484 -33047270 + L3 LINE CR1 1473 1526 -51 569 309 33 29 chr15 52648787 52649030 -33046724 - L3 LINE CR1 -57 1520 1277 425 246 82 22 chr15 52649248 52649382 -33046372 - MIR3 SINE MIR -7 201 60 1923 114 4 4 chr15 52649390 52649698 -33046056 - AluSg SINE Alu 0 310 3 1906 133 7 7 chr15 52649893 52650179 -33045575 - AluSx SINE Alu -22 290 5 599 245 65 0 chr15 52650326 52650481 -33045273 - L1MC4a LINE L1 -1963 5845 5681 548 200 0 0 chr15 52650501 52650596 -33045158 + AluJ/FLAM SINE Alu 2 96 -216 32 0 0 0 chr15 52650698 52650730 -33045024 + AT_rich Low_complexity Low_complexity 1 32 0 1002 133 7 0 chr15 52650730 52650881 -33044873 - AluSg/x SINE Alu -25 287 136 1572 177 20 0 chr15 52650881 52651181 -33044573 - L1MB5 LINE L1 -287 5887 5582 216 130 43 22 chr15 52651193 52651239 -33044515 + MIR SINE MIR 189 235 -27 427 192 96 66 chr15 52651241 52651408 -33044346 - MIR SINE MIR 0 262 91 285 260 165 47 chr15 52651428 52651555 -33044199 + L3 LINE CR1 1314 1455 -122 845 145 0 0 chr15 52651693 52651817 -33043937 + FLAM_C SINE Alu 2 125 -18 534 301 57 6 chr15 52654429 52654605 -33041149 + L3 LINE CR1 1392 1576 -1 204 186 395 0 chr15 52655745 52655831 -33039923 + L2 LINE L2 3185 3304 -9 198 351 169 11 chr15 52656638 52656994 -33038760 + L2 LINE L2 1354 1765 -1549 296 355 206 5 chr15 52657166 52657589 -33038165 + L2 LINE L2 2059 2566 -748 541 229 140 6 chr15 52659027 52659184 -33036570 - MER5B DNA MER1_type 0 178 1 938 209 11 0 chr15 52665226 52665413 -33030341 + MER5A DNA MER1_type 1 189 0 250 301 68 55 chr15 52665462 52665608 -33030146 + MIR3 SINE MIR 58 205 -3 1895 165 23 79 chr15 52666746 52667188 -33028566 - MER96B DNA MER1_type 0 417 1 183 254 18 18 chr15 52669108 52669163 -33026591 - MIR SINE MIR -77 131 77 300 354 76 0 chr15 52669568 52669726 -33026028 + L2 LINE L2 2614 2783 -531 267 333 83 0 chr15 52670143 52670287 -33025467 - MIR SINE MIR 0 262 107 220 298 251 0 chr15 52670480 52670651 -33025103 - MIR SINE MIR -40 222 9 27 0 0 0 chr15 52670651 52670678 -33025076 + AT_rich Low_complexity Low_complexity 1 27 0 212 226 66 94 chr15 52670720 52670826 -33024928 - L2 LINE L2 0 3272 3170 619 224 92 7 chr15 52670883 52671035 -33024719 - MIR SINE MIR -5 257 93 741 232 87 55 chr15 52671372 52671610 -33024144 - MIR SINE MIR 0 262 8 1311 257 119 15 chr15 52672879 52673740 -33022014 - L2 LINE L2 -4 3309 2353 414 0 0 0 chr15 52674197 52674243 -33021511 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 398 0 9 chr15 52674347 52674455 -33021299 - L2 LINE L2 -466 2848 2742 199 403 23 19 chr15 52674902 52675118 -33020636 + L3b LINE CR1 1179 1395 -188 251 261 0 15 chr15 52675236 52675301 -33020453 - MIR3 SINE MIR -39 169 106 208 291 18 64 chr15 52675893 52676003 -33019751 - MIR SINE MIR -69 139 35 1927 103 26 0 chr15 52676273 52676544 -33019210 + AluSx SINE Alu 1 278 -34 486 0 0 0 chr15 52676544 52676598 -33019156 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 1811 131 4 0 chr15 52676710 52676970 -33018784 + AluSx SINE Alu 1 261 -51 974 177 0 0 chr15 52677012 52677176 -33018578 + FRAM SINE Alu 1 161 -15 955 236 45 17 chr15 52677768 52678062 -33017692 + L1ME2 LINE L1 5869 6334 0 239 274 63 21 chr15 52678079 52678174 -33017580 + MIR SINE MIR 33 131 -77 223 344 13 51 chr15 52679867 52680024 -33015730 - MIR3 SINE MIR -23 185 35 354 275 38 23 chr15 52680775 52680906 -33014848 + L2 LINE L2 2915 3047 -225 192 294 59 0 chr15 52682347 52682415 -33013339 - MER5C DNA MER1_type -251 73 2 226 250 33 0 chr15 52682480 52682540 -33013214 - L3 LINE CR1 -114 1463 1402 280 318 0 12 chr15 52682936 52683021 -33012733 - MIR SINE MIR -90 118 35 246 128 0 0 chr15 52683353 52683392 -33012362 + (TG)n Simple_repeat Simple_repeat 2 40 0 303 294 158 36 chr15 52683662 52683883 -33011871 - L2 LINE L2 -213 3059 2812 1269 178 34 91 chr15 52683992 52684312 -33011442 - AluJo SINE Alu -10 302 1 220 333 83 9 chr15 52687032 52687140 -33008614 - L2 LINE L2 0 3272 3157 204 293 53 0 chr15 52687407 52687482 -33008272 + MIR SINE MIR 54 132 -130 207 296 0 20 chr15 52687575 52687673 -33008081 + CT-rich Low_complexity Low_complexity 2 97 0 275 247 142 25 chr15 52688132 52688253 -33007501 + MIR SINE MIR 45 184 -63 22 0 0 0 chr15 52688571 52688593 -33007161 + AT_rich Low_complexity Low_complexity 1 22 0 216 419 0 0 chr15 52688868 52689047 -33006707 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 409 150 80 30 chr15 52691319 52691419 -33004335 + MIR SINE MIR 41 145 -63 2238 113 3 0 chr15 52693268 52693579 -33002175 + AluSx SINE Alu 1 312 0 216 300 17 0 chr15 52694042 52694102 -33001652 + G-rich Low_complexity Low_complexity 2 62 0 1385 116 0 5 chr15 52694592 52694791 -33000963 + AluSg/x SINE Alu 99 296 -16 318 286 0 17 chr15 52694897 52695016 -33000738 + L1ME LINE L1 5535 5651 -470 702 204 41 21 chr15 52695423 52695640 -33000114 - L1MB7 LINE L1 -221 5963 5771 23 33 0 0 chr15 52696488 52696518 -32999236 + AT_rich Low_complexity Low_complexity 1 30 0 1470 158 88 0 chr15 52696895 52697167 -32998587 - AluJb SINE Alu -16 296 1 475 176 0 0 chr15 52697316 52697390 -32998364 + AluJ/FLAM SINE Alu 2 75 -237 227 209 209 0 chr15 52698827 52698894 -32996860 - MIR SINE MIR -96 166 86 22 0 0 0 chr15 52700918 52700940 -32994814 + AT_rich Low_complexity Low_complexity 1 22 0 1015 158 0 0 chr15 52706097 52706255 -32989499 - 7SLRNA srpRNA srpRNA -71 249 92 239 312 176 0 chr15 52706990 52707115 -32988639 - MIR SINE MIR -6 256 110 1899 121 7 42 chr15 52707179 52707486 -32988268 - AluSx SINE Alu -14 298 3 192 237 0 0 chr15 52708035 52708073 -32987681 - MIR SINE MIR -63 145 108 201 264 38 0 chr15 52708835 52708888 -32986866 - MIR SINE MIR -59 149 95 491 201 123 57 chr15 52709876 52710060 -32985694 - MIR SINE MIR -57 205 16 342 0 0 0 chr15 52710241 52710279 -32985475 + (CA)n Simple_repeat Simple_repeat 2 39 0 349 261 70 17 chr15 52711682 52711797 -32983957 - L2 LINE L2 -5 3308 3188 269 306 150 0 chr15 52711803 52711950 -32983804 - MIR3 SINE MIR -9 199 31 2117 133 0 0 chr15 52712602 52712911 -32982843 + AluSx SINE Alu 1 309 -3 418 195 111 28 chr15 52713670 52713818 -32981936 - MIR3 SINE MIR -64 144 5 427 282 66 11 chr15 52714001 52714182 -32981572 - MIR SINE MIR -70 192 2 27 73 0 0 chr15 52716404 52716459 -32979295 + AT_rich Low_complexity Low_complexity 1 55 0 2219 104 0 16 chr15 52716804 52717121 -32978633 + AluSx SINE Alu 1 312 0 819 194 7 7 chr15 52717444 52717599 -32978155 + MER5A DNA MER1_type 2 156 -33 1547 189 4 4 chr15 52718337 52718612 -32977142 + AluJo SINE Alu 1 275 -37 328 278 152 49 chr15 52718706 52718781 -32976973 + L1ME LINE L1 5317 5383 -779 2066 115 3 3 chr15 52718781 52719077 -32976677 + AluSx SINE Alu 1 296 -16 328 278 152 49 chr15 52719077 52719350 -32976404 + L1ME LINE L1 5383 5701 -461 702 204 41 21 chr15 52719709 52719926 -32975828 - L1MB7 LINE L1 -221 5963 5771 23 33 0 0 chr15 52720775 52720805 -32974949 + AT_rich Low_complexity Low_complexity 1 30 0 1479 158 88 0 chr15 52721183 52721456 -32974298 - AluJb SINE Alu -15 297 1 475 176 0 0 chr15 52721605 52721679 -32974075 + AluJ/FLAM SINE Alu 2 75 -237 208 260 123 14 chr15 52723105 52723178 -32972576 - MIR SINE MIR -96 166 86 1503 132 0 0 chr15 52725100 52725319 -32970435 + AluY SINE Alu 1 219 -92 1343 192 80 0 chr15 52725953 52726229 -32969525 - AluJo SINE Alu -14 298 1 934 134 0 13 chr15 52726550 52726699 -32969055 + MSTB LTR MaLR 1 147 -279 789 127 8 0 chr15 52726699 52726817 -32968937 - AluSg/x SINE Alu -1 309 191 888 181 224 0 chr15 52726818 52727023 -32968731 + MSTB LTR MaLR 139 389 -37 1816 142 14 0 chr15 52727024 52727306 -32968448 + AluSq SINE Alu 2 287 -26 1228 146 0 5 chr15 52727306 52727498 -32968256 + AluSg/x SINE Alu 108 298 -14 269 152 22 0 chr15 52727499 52727545 -32968209 + MSTB LTR MaLR 382 428 0 415 290 37 0 chr15 52732244 52732351 -32963403 - L2 LINE L2 0 3313 3203 2250 118 7 0 chr15 52732520 52732817 -32962937 - AluSx SINE Alu -9 303 5 288 214 0 0 chr15 52732861 52732917 -32962837 + L1MA10 LINE L1 6174 6229 -105 190 215 46 46 chr15 52733019 52733084 -32962670 + L2 LINE L2 2909 2973 -299 209 32 0 32 chr15 52733330 52733361 -32962393 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 350 268 45 0 chr15 52734233 52734345 -32961409 - L1ME3A LINE L1 -5 6165 6049 1178 150 19 0 chr15 52734683 52734890 -32960864 + MER2 DNA MER2_type 1 211 -134 1575 163 35 18 chr15 52735267 52735548 -32960206 + AluJo SINE Alu 22 307 -5 1815 120 45 34 chr15 52735548 52735840 -32959914 + AluSq SINE Alu 1 295 -18 971 227 63 68 chr15 52736006 52736124 -32959630 + LTR37B LTR ERV1 7 124 -344 745 218 50 0 chr15 52736124 52736303 -32959451 - MER5A DNA MER1_type 0 189 2 971 227 63 68 chr15 52736303 52736431 -32959323 + LTR37B LTR ERV1 124 251 -217 2269 113 3 0 chr15 52736431 52736723 -32959031 - AluSx SINE Alu -19 293 1 971 227 63 68 chr15 52736723 52736934 -32958820 + LTR37B LTR ERV1 251 463 -5 1648 163 9 62 chr15 52736936 52737256 -32958498 + AluSx SINE Alu 1 303 -9 2116 103 64 17 chr15 52737291 52737649 -32958105 + THE1C LTR MaLR 1 375 0 889 221 53 0 chr15 52737782 52737990 -32957764 + MER20 DNA MER1_type 1 219 0 1341 191 38 0 chr15 52738122 52738358 -32957396 + AluJo SINE Alu 7 251 -61 726 182 0 0 chr15 52738369 52738501 -32957253 - FLAM_C SINE Alu -1 132 1 305 292 160 0 chr15 52739369 52739513 -32956241 + L1M4 LINE L1 4515 4681 -1465 881 158 7 7 chr15 52739661 52739813 -32955941 + FRAM SINE Alu 2 153 -13 216 260 0 0 chr15 52740277 52740327 -32955427 - MIR SINE MIR -85 123 74 226 208 19 0 chr15 52742926 52742979 -32952775 + MIR SINE MIR 79 132 -76 284 259 52 43 chr15 52743034 52743150 -32952604 + MER91C DNA MER1_type 1 117 -23 976 93 6 43 chr15 52743233 52743395 -32952359 - MER5A DNA MER1_type -32 157 2 1523 198 8 0 chr15 52743404 52743672 -32952082 - AluJb SINE Alu -5 307 38 2385 174 43 20 chr15 52743722 52744151 -32951603 + L1MD2 LINE L1 5377 5822 -537 2254 105 0 13 chr15 52744151 52744290 -32951464 + AluSx SINE Alu 1 140 -172 2173 125 0 25 chr15 52744290 52744609 -32951145 + AluSq SINE Alu 1 311 -2 2254 105 0 13 chr15 52744609 52744782 -32950972 + AluSx SINE Alu 140 309 -3 2385 174 43 20 chr15 52744782 52744892 -32950862 + L1MD2 LINE L1 5822 5928 -431 2091 129 13 7 chr15 52744894 52745204 -32950550 - AluSx SINE Alu 0 312 1 324 0 0 0 chr15 52745207 52745243 -32950511 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 566 175 10 0 chr15 52745262 52745365 -32950389 - AluSc SINE Alu -86 223 120 693 225 46 135 chr15 52745365 52745712 -32950042 + L1MD2 LINE L1 5925 6240 -2 25 0 0 0 chr15 52745724 52745749 -32950005 + AT_rich Low_complexity Low_complexity 1 25 0 525 131 123 0 chr15 52745908 52746038 -32949716 - MER53 DNA DNA -4 185 40 260 282 12 0 chr15 52746059 52746144 -32949610 - L1MCc LINE L1 -4945 1478 1393 2170 138 0 0 chr15 52746145 52746443 -32949311 - AluSq SINE Alu -15 298 1 1045 161 0 0 chr15 52746444 52746599 -32949155 - AluJb SINE Alu -13 299 145 1897 155 16 0 chr15 52746607 52746911 -32948843 - MER1B DNA MER1_type -29 310 2 1012 170 0 0 chr15 52746911 52747064 -32948690 - AluJb SINE Alu -157 155 3 569 328 59 65 chr15 52747068 52747921 -32947833 - L1MEc LINE L1 -5512 884 37 253 227 47 31 chr15 52747948 52748076 -32947678 + L1M LINE L1 5282 5411 -2397 826 199 60 0 chr15 52748076 52748242 -32947512 + AluJb SINE Alu 121 296 -16 2441 260 68 32 chr15 52748268 52749028 -32946726 + L1MEc LINE L1 37 768 -5628 2093 156 0 0 chr15 52749028 52749329 -32946425 + AluSx SINE Alu 1 301 -11 2441 260 68 32 chr15 52749329 52749531 -32946223 + L1MEc LINE L1 768 961 -5435 2129 134 7 0 chr15 52749531 52749830 -32945924 + AluJo SINE Alu 1 301 -11 2441 260 68 32 chr15 52749830 52749894 -32945860 + L1MEc LINE L1 961 1021 -5375 890 111 0 22 chr15 52749894 52750029 -32945725 + FLAM_C SINE Alu 1 132 -1 2441 260 68 32 chr15 52750029 52750041 -32945713 + L1MEc LINE L1 1021 1115 -5281 1159 212 71 31 chr15 52750035 52750389 -32945365 + L1MEc LINE L1 1615 1982 -4414 * 1225 309 69 20 chr15 52750408 52750962 -32944792 - HERV16 LTR ERVL -2738 2258 1710 1851 174 0 7 chr15 52751027 52751321 -32944433 + AluJo SINE Alu 14 305 -7 515 366 12 8 chr15 52751383 52751626 -32944128 - HERV16 LTR ERVL -3478 1518 1275 2921 83 5 16 chr15 52751687 52752110 -32943644 - MER11C LTR ERVK -14 1057 640 2249 107 0 0 chr15 52752260 52752572 -32943182 - AluY SINE Alu 0 312 1 1591 135 29 50 chr15 52752580 52752832 -32942922 - L1MA5 LINE L1 -2 6298 6053 1694 181 46 0 chr15 52752832 52753113 -32942641 - AluJo SINE Alu -18 294 1 1591 135 29 50 chr15 52753113 52753201 -32942553 - L1MA5 LINE L1 -247 6053 5965 709 127 51 38 chr15 52753201 52753356 -32942398 + L1MA7 LINE L1 6123 6282 -9 425 239 0 0 chr15 52753452 52753544 -32942210 - MIR SINE MIR -67 141 50 1745 120 0 4 chr15 52753916 52754157 -32941597 + AluSx SINE Alu 63 302 -10 482 258 188 5 chr15 52754267 52754453 -32941301 + MIR SINE MIR 17 236 -26 256 173 18 55 chr15 52754549 52754659 -32941095 + CT-rich Low_complexity Low_complexity 3 108 0 198 221 59 0 chr15 52755201 52755269 -32940485 - MIR SINE MIR -71 137 66 207 290 97 11 chr15 52755805 52755898 -32939856 + MIR3 SINE MIR 108 208 0 575 305 62 20 chr15 52755943 52756288 -32939466 + LTR16A1 LTR ERVL 107 445 -12 256 329 66 24 chr15 52757042 52757209 -32938545 - MIR3 SINE MIR -31 177 4 489 232 36 7 chr15 52757478 52757616 -32938138 + FLAM_A SINE Alu 1 142 0 2170 138 0 3 chr15 52758091 52758396 -32937358 + AluSq SINE Alu 1 304 -9 348 221 115 18 chr15 52758485 52758598 -32937156 + MLT1L LTR MaLR 422 545 -70 1829 182 6 13 chr15 52758842 52759155 -32936599 - AluJb SINE Alu -1 311 1 513 268 76 43 chr15 52759862 52759963 -32935791 - MIR SINE MIR -4 258 162 2448 63 27 10 chr15 52759963 52760263 -32935491 - AluSg SINE Alu -5 305 1 513 268 76 43 chr15 52760263 52760375 -32935379 - MIR SINE MIR -100 162 39 525 16 0 0 chr15 52760512 52760574 -32935180 + (TG)n Simple_repeat Simple_repeat 1 62 0 21 57 0 0 chr15 52763817 52763852 -32931902 + GC_rich Low_complexity Low_complexity 1 35 0 229 245 0 0 chr15 52767237 52767290 -32928464 + G-rich Low_complexity Low_complexity 3 55 0 21 82 0 0 chr15 52767895 52767944 -32927810 + GC_rich Low_complexity Low_complexity 1 49 0 2305 67 7 10 chr15 52769080 52769418 -32926336 - AluSc SINE Alu 0 309 1 255 219 14 0 chr15 52770167 52770240 -32925514 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 189 121 0 0 chr15 52771550 52771583 -32924171 + (T)n Simple_repeat Simple_repeat 1 33 0 276 100 0 0 chr15 52771885 52771925 -32923829 + (T)n Simple_repeat Simple_repeat 1 40 0 27 62 0 0 chr15 52772978 52773026 -32922728 + AT_rich Low_complexity Low_complexity 1 48 0 236 373 20 20 chr15 52773078 52773180 -32922574 - L3 LINE CR1 -45 1532 1431 450 0 0 0 chr15 52773479 52773529 -32922225 + (TG)n Simple_repeat Simple_repeat 2 51 0 550 321 36 8 chr15 52775186 52775438 -32920316 - MIR SINE MIR 0 262 4 2077 129 0 46 chr15 52775604 52775980 -32919774 + AluSx SINE Alu 1 361 0 2085 219 71 40 chr15 52775993 52776615 -32919139 + L1ME3 LINE L1 5516 6156 -6 216 67 0 0 chr15 52776615 52776645 -32919109 + (TG)n Simple_repeat Simple_repeat 1 30 0 2204 107 0 0 chr15 52776645 52776925 -32918829 - AluSq SINE Alu -33 280 1 818 171 47 26 chr15 52777007 52777200 -32918554 - MER3 DNA MER1_type -2 207 11 314 286 109 8 chr15 52777204 52777323 -32918431 - L1ME4a LINE L1 -28 6093 5963 2193 108 7 7 chr15 52777475 52777772 -32917982 - AluSp SINE Alu -16 297 1 975 294 31 13 chr15 52778429 52779037 -32916717 - L1M4 LINE L1 -3090 3056 2438 643 204 72 6 chr15 52779073 52779240 -32916514 - L1ME3A LINE L1 -71 6099 5922 7962 103 42 14 chr15 52779244 52779641 -32916113 + HSMAR2 DNA Mariner 3 387 -915 1934 156 0 16 chr15 52779641 52779948 -32915806 - AluJb SINE Alu -4 308 7 7962 103 42 14 chr15 52779948 52780809 -32914945 + HSMAR2 DNA Mariner 387 1296 -6 1562 225 106 13 chr15 52780813 52781532 -32914222 - L1ME3A LINE L1 -561 5609 4835 827 169 23 105 chr15 52781549 52781768 -32913986 - MLT1D LTR MaLR -261 244 44 316 85 0 0 chr15 52781768 52781815 -32913939 - L1M LINE L1 -942 5300 5254 1918 122 49 3 chr15 52781830 52782117 -32913637 - AluSq SINE Alu -13 300 1 2649 227 55 39 chr15 52782117 52782964 -32912790 - L1M4 LINE L1 -864 5282 4422 2402 63 0 23 chr15 52782964 52783266 -32912488 + AluY SINE Alu 1 295 -16 428 273 45 17 chr15 52783434 52783610 -32912144 + MER106A DNA MER1_type 50 230 -6 2196 141 141 0 chr15 52784688 52785063 -32910691 + MSTA LTR MaLR 1 428 0 283 125 0 0 chr15 52785161 52785201 -32910553 - MLT1D LTR MaLR -437 68 29 21 0 0 0 chr15 52785221 52785242 -32910512 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 52785689 52785718 -32910036 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr15 52787301 52787336 -32908418 + AT_rich Low_complexity Low_complexity 1 35 0 266 190 25 0 chr15 52788620 52788707 -32907047 + (TAA)n Simple_repeat Simple_repeat 1 89 0 244 241 60 90 chr15 52788983 52789116 -32906638 - LTR48B LTR ERV1 -422 222 141 * 370 182 3 64 chr15 52789083 52789199 -32906555 - MER34C LTR ERV1 -422 136 26 25 0 0 0 chr15 52790026 52790051 -32905703 + AT_rich Low_complexity Low_complexity 1 25 0 212 188 14 0 chr15 52790534 52790603 -32905151 + (TAA)n Simple_repeat Simple_repeat 2 71 0 21 57 0 0 chr15 52790923 52790958 -32904796 + AT_rich Low_complexity Low_complexity 1 35 0 7725 68 3 1 chr15 52791151 52792144 -32903610 + L1P LINE L1 3 997 -5149 1001 161 46 170 chr15 52792244 52792573 -32903181 - L1M1 LINE L1 -5672 1893 1606 690 267 109 18 chr15 52792643 52792864 -32902890 + MIR SINE MIR 1 241 -21 1454 209 26 0 chr15 52793203 52793509 -32902245 + L1ME3 LINE L1 5794 6107 -55 1489 169 4 4 chr15 52793509 52793757 -32901997 + AluSq SINE Alu 1 248 -65 7916 19 0 1 chr15 52793857 52795418 -32900336 + L1PA2 LINE L1 4591 6151 -4 23 0 0 0 chr15 52795418 52795441 -32900313 + AT_rich Low_complexity Low_complexity 1 23 0 337 252 77 65 chr15 52795441 52795596 -32900158 + L1ME LINE L1 5452 5608 -554 15484 32 15 0 chr15 52795697 52797542 -32898212 - L1P LINE L1 -926 5220 3349 2285 65 7 0 chr15 52797643 52797920 -32897834 + AluY SINE Alu 12 290 -21 187 254 17 17 chr15 52797953 52798012 -32897742 - L2 LINE L2 -569 2745 2687 1129 114 20 55 chr15 52798019 52798220 -32897534 + L1MD2 LINE L1 6164 6357 -2 2278 104 0 10 chr15 52798224 52798531 -32897223 + AluSq SINE Alu 1 304 -9 3951 163 15 3 chr15 52798531 52799212 -32896542 + L1MB2 LINE L1 5451 6139 -32 2136 142 3 0 chr15 52799212 52799523 -32896231 + AluSx SINE Alu 1 312 0 2193 101 7 0 chr15 52799545 52799832 -32895922 + AluSq SINE Alu 5 293 -20 2022 146 7 0 chr15 52800141 52800435 -32895319 + AluSx SINE Alu 6 301 -11 230 162 40 27 chr15 52800441 52800515 -32895239 + L1MEd LINE L1 1023 1097 -5022 903 149 72 67 chr15 52800673 52800868 -32894886 + LTR18B LTR ERVL 419 614 0 1123 149 17 0 chr15 52800870 52801044 -32894710 + AluSg/x SINE Alu 111 287 -25 1703 137 53 28 chr15 52801177 52801461 -32894293 - AluJb SINE Alu -9 303 13 208 167 0 0 chr15 52802344 52802380 -32893374 - MIR SINE MIR -70 192 157 688 205 0 0 chr15 52803235 52803352 -32892402 - AluJo/FRAM SINE Alu -50 262 146 523 163 0 12 chr15 52803353 52803439 -32892315 - AluJ/FLAM SINE Alu -223 89 5 282 300 75 21 chr15 52803525 52803834 -32891920 - L1MEd LINE L1 -5255 864 537 2279 102 6 16 chr15 52803836 52804150 -32891604 + AluSx SINE Alu 1 311 -1 494 233 9 35 chr15 52804924 52805040 -32890714 - MLT1J LTR MaLR -33 478 366 670 203 0 0 chr15 52805068 52805186 -32890568 - MLT1J LTR MaLR -343 168 51 2119 127 3 3 chr15 52805212 52805511 -32890243 + AluSq SINE Alu 1 299 -14 384 22 0 0 chr15 52805511 52805556 -32890198 + (GA)n Simple_repeat Simple_repeat 1 45 0 563 158 0 0 chr15 52805665 52805747 -32890007 + AluSg/x SINE Alu 197 278 -32 225 0 0 0 chr15 52805747 52805772 -32889982 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 384 146 19 126 chr15 52805772 52805827 -32889927 + MER63 DNA MER1_type 679 720 -341 2113 123 13 0 chr15 52805827 52806127 -32889627 - AluSq SINE Alu -9 304 1 384 146 19 126 chr15 52806127 52806174 -32889580 + MER63 DNA MER1_type 720 770 -291 1754 242 119 34 chr15 52806227 52806949 -32888805 - MER45C DNA AcHobo -636 945 124 2346 99 3 19 chr15 52806949 52807262 -32888492 + AluSx SINE Alu 1 308 -4 1754 242 119 34 chr15 52807262 52807370 -32888384 - MER45C DNA AcHobo -1457 124 27 2386 100 0 0 chr15 52807425 52807724 -32888030 + AluSx SINE Alu 1 299 -13 1446 181 50 28 chr15 52808115 52808269 -32887485 + Tigger1 DNA MER2_type 147 296 -2122 2096 194 16 41 chr15 52808269 52808708 -32887046 - MSTA LTR MaLR 0 428 1 1446 181 50 28 chr15 52808708 52808873 -32886881 + Tigger1 DNA MER2_type 296 473 -1945 1681 173 7 0 chr15 52808908 52809185 -32886569 - AluSx SINE Alu -20 292 14 752 89 152 0 chr15 52809327 52809439 -32886315 - AluY SINE Alu -181 130 2 1579 146 32 64 chr15 52809448 52809704 -32886050 - L1MA5 LINE L1 -2 6298 6054 1709 176 48 0 chr15 52809704 52809999 -32885755 - AluJo SINE Alu -3 309 1 1579 146 32 64 chr15 52809999 52810084 -32885670 - L1MA5 LINE L1 -246 6054 5968 699 156 131 0 chr15 52810085 52810245 -32885509 + L1MA9 LINE L1 6123 6303 -9 501 221 9 0 chr15 52810306 52810419 -32885335 - MIR3 SINE MIR -45 163 50 186 211 19 58 chr15 52811137 52811189 -32884565 + MIR SINE MIR 18 67 -141 659 178 39 0 chr15 52811657 52811786 -32883968 + MER94 DNA DNA 1 134 0 1160 127 0 0 chr15 52812102 52812267 -32883487 - AluSg/x SINE Alu -15 297 133 2225 111 13 3 chr15 52812267 52812574 -32883180 - AluSg SINE Alu 0 310 1 1780 157 16 41 chr15 52813438 52813756 -32881998 + AluJb SINE Alu 1 310 -2 337 319 76 7 chr15 52813766 52813910 -32881844 + MIR SINE MIR 41 194 -68 211 133 22 44 chr15 52814229 52814274 -32881480 - MIR3 SINE MIR -43 165 122 266 235 67 67 chr15 52814800 52814866 -32880888 + LTR16C LTR ERVL 371 439 -52 1781 160 81 65 chr15 52814866 52815311 -32880443 - LTR47A LTR ERVL 0 452 1 266 235 67 67 chr15 52815311 52815363 -32880391 + LTR16C LTR ERVL 438 489 -2 6118 94 104 9 chr15 52815487 52816398 -32879356 - HUERS-P1 LTR ERV1 -5265 998 1 1576 116 0 5 chr15 52816398 52816613 -32879141 - LTR8 LTR ERV1 0 691 478 702 145 52 79 chr15 52817128 52817542 -32878212 + MER51A LTR ERV1 5 634 0 207 0 0 0 chr15 52818065 52818088 -32877666 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2025 115 41 0 chr15 52818114 52818409 -32877345 + AluSx SINE Alu 1 307 -5 262 264 49 125 chr15 52818901 52819037 -32876717 + L2 LINE L2 2888 3033 -239 1440 166 48 38 chr15 52819037 52819327 -32876427 + AluJo SINE Alu 1 293 -19 262 264 49 125 chr15 52819327 52819557 -32876197 + L2 LINE L2 3033 3226 -46 226 205 152 62 chr15 52819761 52819873 -32875881 - MIR SINE MIR -61 147 26 255 217 12 48 chr15 52820465 52820548 -32875206 + MLT1H LTR MaLR 454 533 -16 2262 79 3 3 chr15 52820961 52821251 -32874503 + AluY SINE Alu 21 310 -1 2098 200 91 95 chr15 52821294 52821371 -32874383 - L1MC5 LINE L1 -286 7675 7599 1799 191 0 10 chr15 52821371 52821685 -32874069 - AluJo SINE Alu -1 311 1 2098 200 91 95 chr15 52821685 52821837 -32873917 - L1MC5 LINE L1 -362 7599 7448 2161 119 7 0 chr15 52821837 52822140 -32873614 - AluSx SINE Alu -2 310 6 2098 200 91 95 chr15 52822140 52822817 -32872937 - L1MC5 LINE L1 -513 7448 6771 235 194 14 97 chr15 52823517 52823589 -32872165 + MIR3 SINE MIR 111 176 -32 935 46 0 0 chr15 52824239 52824348 -32871406 + MER30 DNA MER1_type 2 110 -120 189 0 0 0 chr15 52824363 52824384 -32871370 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1273 107 0 0 chr15 52824391 52824550 -32871204 - AluSg/x SINE Alu -25 287 129 831 96 52 0 chr15 52824553 52824668 -32871086 + MER30 DNA MER1_type 110 230 0 478 192 0 48 chr15 52824756 52824860 -32870894 + FLAM_C SINE Alu 43 141 -2 198 287 58 11 chr15 52824869 52824956 -32870798 + MIR SINE MIR 154 244 -18 2260 111 0 10 chr15 52825114 52825420 -32870334 + AluSx SINE Alu 1 303 -9 310 254 110 17 chr15 52826048 52826166 -32869588 + LTR16C LTR ERVL 361 489 -2 747 310 35 7 chr15 52826404 52826714 -32869040 + L1MEd LINE L1 514 832 -5287 677 107 69 61 chr15 52826716 52826847 -32868907 + FLAM_C SINE Alu 1 132 -1 374 151 57 6 chr15 52826847 52827006 -32868748 + (TA)n Simple_repeat Simple_repeat 2 168 0 2300 95 0 0 chr15 52827107 52827422 -32868332 + AluSx SINE Alu 1 315 0 255 61 0 0 chr15 52827422 52827455 -32868299 - MADE1 DNA Mariner -46 34 2 26 64 0 0 chr15 52827562 52827609 -32868145 + AT_rich Low_complexity Low_complexity 1 47 0 244 184 0 0 chr15 52827609 52827647 -32868107 - Alu SINE Alu -95 38 1 528 325 0 11 chr15 52827648 52827836 -32867918 - HAL1 LINE L1 -868 1639 1454 885 161 0 7 chr15 52827897 52828034 -32867720 - FRAM SINE Alu -33 143 8 540 235 35 153 chr15 52828050 52828091 -32867663 + L1MEd LINE L1 946 990 -5320 1663 148 76 0 chr15 52828091 52828368 -32867386 + AluJb SINE Alu 1 298 -14 540 235 35 153 chr15 52828368 52828579 -32867175 + L1MEd LINE L1 990 1224 -5086 1661 189 0 4 chr15 52828579 52828859 -32866895 + AluJb SINE Alu 1 279 -33 540 235 35 153 chr15 52828859 52829099 -32866655 + L1MEd LINE L1 1224 1566 -4744 2344 119 0 0 chr15 52829101 52829411 -32866343 + AluSx SINE Alu 1 310 -2 192 211 0 0 chr15 52829634 52829672 -32866082 + MER5A DNA MER1_type 6 43 -146 1294 182 17 4 chr15 52829681 52829912 -32865842 + AluJo SINE Alu 63 296 -16 1677 175 10 16 chr15 52829945 52830259 -32865495 + AluJb SINE Alu 1 312 0 849 333 39 24 chr15 52830716 52831173 -32864581 + HERV16 LTR ERVL 1003 1466 -3530 365 188 65 87 chr15 52831178 52831316 -32864438 + FAM SINE Alu 40 174 -1 294 270 31 92 chr15 52831546 52831709 -32864045 - MIR3 SINE MIR -1 207 55 251 224 48 56 chr15 52831848 52831973 -32863781 - L1ME LINE L1 -287 5834 5711 * 282 77 0 58 chr15 52831969 52832021 -32863733 + L1ME LINE L1 5709 5757 -364 840 113 0 0 chr15 52832128 52832234 -32863520 + AluSq/x SINE Alu 4 109 -204 1786 138 3 50 chr15 52832238 52832558 -32863196 + LTR18B LTR ERVL 1 305 -309 2112 99 0 25 chr15 52832658 52832940 -32862814 - AluSx SINE Alu -4 308 34 344 284 0 0 chr15 52833372 52833467 -32862287 - MIR SINE MIR -115 147 53 1450 181 104 4 chr15 52833666 52833936 -32861818 - AluJb SINE Alu -15 297 1 270 235 59 12 chr15 52834169 52834254 -32861500 + MIR SINE MIR 50 138 -70 21 0 0 0 chr15 52835250 52835271 -32860483 + GC_rich Low_complexity Low_complexity 1 21 0 190 244 0 0 chr15 52835406 52835447 -32860307 + MIR3 SINE MIR 118 158 -50 290 200 108 15 chr15 52836008 52836073 -32859681 + MER3 DNA MER1_type 36 106 -103 348 191 32 43 chr15 52836483 52836577 -32859177 + MER34 LTR ERV1 450 542 0 951 162 66 39 chr15 52836579 52836838 -32858916 + MER33 DNA MER1_type 59 324 0 1659 189 4 4 chr15 52838169 52838444 -32857310 + AluJo SINE Alu 1 275 -37 334 275 152 49 chr15 52838538 52838613 -32857141 + L1ME LINE L1 5317 5383 -779 2222 111 3 3 chr15 52838613 52838910 -32856844 + AluSx SINE Alu 1 297 -15 334 275 152 49 chr15 52838910 52839183 -32856571 + L1ME LINE L1 5383 5701 -461 714 199 51 24 chr15 52839542 52839821 -32855933 - L1MB7 LINE L1 -207 5963 5693 21 36 0 0 chr15 52840607 52840635 -32855119 + AT_rich Low_complexity Low_complexity 1 28 0 1574 158 92 0 chr15 52841018 52841290 -32854464 - AluJb SINE Alu -15 297 1 834 183 0 0 chr15 52841435 52841566 -32854188 + AluJb SINE Alu 3 133 -179 2546 90 0 0 chr15 52841739 52842050 -32853704 + AluSp SINE Alu 1 311 -2 918 128 30 8 chr15 52842862 52842995 -32852759 + AluJb SINE Alu 121 256 -56 1883 156 17 13 chr15 52843524 52843826 -32851928 + AluJb SINE Alu 9 311 -1 3201 203 23 8 chr15 52844015 52844800 -32850954 + L1 LINE L1 2981 3777 -2369 1776 153 7 23 chr15 52845628 52845928 -32849826 + AluJo SINE Alu 1 295 -17 264 179 96 0 chr15 52845960 52846043 -32849711 + MIR SINE MIR 58 145 -63 243 155 0 0 chr15 52847971 52847989 -32847765 + (TA)n Simple_repeat Simple_repeat 1 18 -40 216 0 0 0 chr15 52847989 52848013 -32847741 + (TC)n Simple_repeat Simple_repeat 2 25 0 243 155 0 0 chr15 52848013 52848052 -32847702 + (TA)n Simple_repeat Simple_repeat 17 58 0 2481 60 0 20 chr15 52849648 52849949 -32845805 - AluY SINE Alu -16 295 1 2309 78 3 0 chr15 52850515 52850822 -32844932 - LTR8 LTR ERV1 -383 308 1 947 204 121 13 chr15 52850895 52851001 -32844753 + MLT1A1 LTR MaLR 86 179 -186 3786 98 59 72 chr15 52851001 52851698 -32844056 + LTR8 LTR ERV1 4 691 0 947 204 121 13 chr15 52851698 52851819 -32843935 + MLT1A1 LTR MaLR 179 338 -27 7275 107 29 9 chr15 52851819 52852546 -32843208 + HSMAR1 DNA Mariner 1 806 -481 2419 143 44 19 chr15 52852546 52852956 -32842798 + LTR19A LTR ERV1 1 426 -60 2495 77 3 3 chr15 52852956 52853268 -32842486 + AluSp SINE Alu 1 312 -1 2419 143 44 19 chr15 52853268 52853331 -32842423 + LTR19A LTR ERV1 426 486 0 7275 107 29 9 chr15 52853331 52853784 -32841970 + HSMAR1 DNA Mariner 806 1249 -38 2853 13 0 16 chr15 52853784 52854100 -32841654 + AluYa5 SINE Alu 1 311 0 1116 189 115 29 chr15 52854105 52854418 -32841336 - MER21B LTR ERV1 -112 751 412 516 180 33 175 chr15 52854546 52854757 -32840997 - MER21B LTR ERV1 -669 194 14 28 91 0 0 chr15 52854771 52854848 -32840906 + AT_rich Low_complexity Low_complexity 1 77 0 1547 135 117 21 chr15 52855011 52855293 -32840461 + AluSg SINE Alu 1 309 -1 381 181 0 0 chr15 52855294 52855366 -32840388 - L1M4 LINE L1 -1210 4936 4865 * 847 222 21 4 chr15 52855365 52855604 -32840150 - L1M4 LINE L1 -1710 4436 4194 2166 113 17 0 chr15 52855607 52855899 -32839855 + AluSx SINE Alu 1 297 -15 248 304 22 22 chr15 52856087 52856179 -32839575 - MIR SINE MIR -73 135 44 1271 101 0 6 chr15 52856389 52856582 -32839172 + AluSg/x SINE Alu 128 312 0 422 68 135 0 chr15 52856582 52856656 -32839098 - L1MA9 LINE L1 -177 6135 6052 2461 286 75 28 chr15 52856758 52857873 -32837881 - HAL1 LINE L1 -36 2471 1304 1509 189 38 60 chr15 52858378 52858775 -32836979 + MLT1B LTR MaLR 3 390 0 277 343 30 65 chr15 52858845 52859215 -32836539 + MLT1K LTR MaLR 226 582 -6 1950 185 0 0 chr15 52860402 52860710 -32835044 + AluJb SINE Alu 5 312 0 326 251 89 0 chr15 52860721 52860851 -32834903 + HAL1 LINE L1 1102 3180 -1304 198 103 0 0 chr15 52860856 52860885 -32834869 + (GGAGA)n Simple_repeat Simple_repeat 1 29 0 1121 337 52 19 chr15 52861197 52861829 -32833925 + HERV16 LTR ERVL 877 1529 -3467 1847 164 0 20 chr15 52861880 52862178 -32833576 - AluJo SINE Alu -7 305 14 678 331 64 8 chr15 52862283 52862780 -32832974 + HERV16 LTR ERVL 1758 2351 -3413 1054 242 61 28 chr15 52862800 52863160 -32832594 - L1MEc LINE L1 -4415 1981 1610 784 137 0 43 chr15 52863176 52863315 -32832439 - FLAM_C SINE Alu 0 133 1 604 181 13 66 chr15 52863361 52863379 -32832375 - L1MEc LINE L1 -5350 1046 1029 2049 141 7 0 chr15 52863379 52863677 -32832077 - AluJo SINE Alu -12 300 1 604 181 13 66 chr15 52863677 52863884 -32831870 - L1MEc LINE L1 -5367 1029 833 631 171 8 0 chr15 52863887 52864004 -32831750 - AluSg/x SINE Alu 0 309 192 1627 156 74 21 chr15 52864628 52864761 -32830993 - AluJo SINE Alu -14 298 173 3553 54 54 0 chr15 52864761 52865226 -32830528 + LTR2B LTR ERV1 1 490 0 1627 156 74 21 chr15 52865226 52865375 -32830379 - AluJo SINE Alu -139 173 1 949 130 0 13 chr15 52865692 52865846 -32829908 + MSTB LTR MaLR 1 152 -274 734 143 8 0 chr15 52865860 52865979 -32829775 - AluSg/x SINE Alu 0 312 193 976 160 218 0 chr15 52865980 52866186 -32829568 + MSTB LTR MaLR 139 389 -37 2070 126 7 0 chr15 52866186 52866471 -32829283 + AluSq SINE Alu 1 287 -26 1240 140 0 6 chr15 52866471 52866691 -32829063 + AluSg/x SINE Alu 108 326 0 304 128 0 0 chr15 52866691 52866738 -32829016 + MSTB LTR MaLR 386 432 0 2163 67 0 15 chr15 52867648 52867915 -32827839 + AluY SINE Alu 1 263 -48 1823 208 56 48 chr15 52870522 52871079 -32824675 - MER97c DNA MER1_type? -438 652 92 304 204 40 138 chr15 52872120 52872216 -32823538 - L3 LINE CR1 -112 1465 1361 2160 143 0 0 chr15 52872216 52872523 -32823231 - AluJb SINE Alu -5 307 1 2493 65 0 31 chr15 52872527 52872848 -32822906 - AluY SINE Alu 0 311 1 304 204 40 138 chr15 52872848 52872898 -32822856 - L3 LINE CR1 -219 1358 1329 216 0 0 0 chr15 52873029 52873053 -32822701 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 278 267 130 30 chr15 52873067 52873198 -32822556 + L3 LINE CR1 1419 1562 -15 2509 175 126 22 chr15 52873637 52873951 -32821803 - MER54A LTR ERVL 0 901 621 2162 66 33 7 chr15 52873951 52874274 -32821480 - AluSc SINE Alu 0 330 1 2509 175 126 22 chr15 52874274 52874597 -32821157 - MER54A LTR ERVL -280 621 16 570 188 152 7 chr15 52875335 52875473 -32820281 + MER96 DNA MER1_type? 15 172 -3 1930 147 0 26 chr15 52877094 52877401 -32818353 - AluJo SINE Alu -13 299 1 279 79 0 0 chr15 52877657 52877695 -32818059 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 229 256 231 17 chr15 52878183 52878300 -32817454 - L2 LINE L2 -5 3308 3167 292 204 0 0 chr15 52878425 52878474 -32817280 + MER66A LTR ERV1 290 338 -140 788 210 83 0 chr15 52878520 52878677 -32817077 - MER45A DNA AcHobo -8 170 1 2295 125 0 0 chr15 52878932 52879235 -32816519 - AluSx SINE Alu -5 307 5 1492 144 4 44 chr15 52879240 52879511 -32816243 - LTR8 LTR ERV1 -431 260 1 1788 169 3 66 chr15 52879511 52879756 -32815998 - HUERS-P1 LTR ERV1 0 6263 6047 4404 112 32 12 chr15 52879756 52880433 -32815321 - LTR8 LTR ERV1 0 691 1 1788 169 3 66 chr15 52880433 52880553 -32815201 - HUERS-P1 LTR ERV1 -216 6047 5921 1081 138 16 57 chr15 52880653 52880818 -32814936 - HUERS-P1 LTR ERV1 -2252 4011 3858 2442 87 0 10 chr15 52880818 52881127 -32814627 - AluY SINE Alu -5 306 1 1081 138 16 57 chr15 52881127 52881208 -32814546 - HUERS-P1 LTR ERV1 -2405 3858 3775 2329 102 0 3 chr15 52881210 52881513 -32814241 - AluSg SINE Alu -8 302 1 327 149 88 32 chr15 52881521 52881616 -32814138 + MER52A LTR ERV1 1 83 -1195 7647 180 86 15 chr15 52882060 52883638 -32812116 + MER52A LTR ERV1 66 1755 0 3697 94 25 14 chr15 52883638 52883687 -32812067 + MER52A-int LTR ERV1 2 49 -7042 2095 147 0 3 chr15 52883687 52884000 -32811754 - AluSx SINE Alu 0 312 1 3697 94 25 14 chr15 52884000 52884514 -32811240 + MER52A-int LTR ERV1 49 571 -6520 538 149 0 0 chr15 52884631 52884718 -32811036 + MER52A-int LTR ERV1 1645 1731 -5360 * 2746 177 14 25 chr15 52884712 52885289 -32810465 + MER52-int LTR ERV1 1080 1792 -5413 2764 16 0 0 chr15 52885422 52885732 -32810022 - AluYb8 SINE Alu -8 310 1 2118 121 3 7 chr15 52885809 52886116 -32809638 - AluSq SINE Alu -7 306 1 3394 166 23 73 chr15 52886151 52886878 -32808876 - LTR8 LTR ERV1 0 691 1 1849 145 0 27 chr15 52887502 52887832 -32807922 - AluSx SINE Alu 0 312 7 201 353 49 20 chr15 52888015 52888117 -32807637 + MIR SINE MIR 87 191 -71 1004 211 0 0 chr15 52888128 52888303 -32807451 + FAM SINE Alu 1 175 0 255 234 65 13 chr15 52888328 52888405 -32807349 + MER115 DNA AcHobo 2 82 -611 371 284 28 60 chr15 52888463 52888678 -32807076 + MER115 DNA AcHobo 207 414 -279 321 189 189 27 chr15 52888692 52888803 -32806951 - MLT1G LTR MaLR -2 588 460 839 202 33 0 chr15 52889666 52889849 -32805905 + MER53 DNA DNA 1 189 0 1887 145 3 0 chr15 52890435 52890718 -32805036 + AluJb SINE Alu 5 288 -24 661 263 25 40 chr15 52890773 52890971 -32804783 + Charlie1a DNA MER1_type 6 200 -1255 462 298 46 21 chr15 52890973 52891435 -32804319 + MER34 LTR ERV1 4 537 -5 845 164 20 0 chr15 52891438 52891590 -32804164 - AluJo SINE Alu -85 227 73 2396 164 34 60 chr15 52891590 52892069 -32803685 + Charlie1a DNA MER1_type 229 692 -2069 2335 113 0 0 chr15 52892069 52892378 -32803376 - AluSx SINE Alu -3 309 1 2396 164 34 60 chr15 52892378 52892482 -32803272 + Charlie1a DNA MER1_type 692 797 -658 210 172 0 52 chr15 52893543 52893601 -32802153 + A-rich Low_complexity Low_complexity 4 58 0 1890 162 0 7 chr15 52893641 52893949 -32801805 - AluJb SINE Alu -1 311 6 269 267 224 9 chr15 52893954 52894070 -32801684 + MIR SINE MIR 92 232 -30 298 222 42 0 chr15 52894265 52894337 -32801417 - MIR SINE MIR -5 257 183 573 294 70 11 chr15 52894811 52894998 -32800756 + MIR SINE MIR 53 250 -12 185 245 38 0 chr15 52896633 52896686 -32799068 - L3 LINE CR1 -290 1287 1233 182 279 49 0 chr15 52896890 52896951 -32798803 + MIR SINE MIR 93 156 -106 396 325 98 5 chr15 52897540 52897734 -32798020 + MIR SINE MIR 37 248 -14 3465 126 10 4 chr15 52897796 52898304 -32797450 - MER9 LTR ERVK 0 511 1 1740 172 0 40 chr15 52898450 52898775 -32796979 + AluJb SINE Alu 1 312 0 795 173 132 100 chr15 52898833 52899204 -32796550 + LTR24B LTR ERV1 188 570 -6 1856 108 87 7 chr15 52899452 52899729 -32796025 - AluSx SINE Alu -13 299 1 450 226 0 35 chr15 52900610 52900718 -32795036 + MIR SINE MIR 39 144 -118 2377 72 0 7 chr15 52900718 52901024 -32794730 + AluY SINE Alu 1 304 -7 1748 143 13 45 chr15 52901030 52901344 -32794410 + AluJo SINE Alu 1 304 -8 2086 123 10 3 chr15 52901351 52901661 -32794093 + AluSx SINE Alu 1 312 0 639 143 14 21 chr15 52902714 52902854 -32792900 + CT-rich Low_complexity Low_complexity 1 139 0 251 259 0 37 chr15 52902863 52902944 -32792810 + C-rich Low_complexity Low_complexity 3 80 0 327 301 11 0 chr15 52903189 52903282 -32792472 + MIR SINE MIR 52 145 -117 1385 136 4 66 chr15 52903292 52903436 -32792318 - AluJo SINE Alu -15 297 172 2516 68 0 0 chr15 52903436 52903747 -32792007 + AluY SINE Alu 1 311 0 1385 136 4 66 chr15 52903747 52903844 -32791910 - AluJo SINE Alu -140 172 71 2333 85 0 16 chr15 52904482 52904798 -32790956 + AluY SINE Alu 1 311 0 1775 178 21 0 chr15 52904807 52905093 -32790661 + AluJb SINE Alu 4 295 -17 1866 133 46 0 chr15 52905145 52905430 -32790324 + AluSq SINE Alu 1 298 -15 335 309 55 0 chr15 52905751 52905861 -32789893 - MER91A DNA MER1_type -44 152 37 834 193 11 17 chr15 52906687 52906863 -32788891 + MIR SINE MIR 5 179 -83 23 0 0 0 chr15 52906893 52906916 -32788838 + AT_rich Low_complexity Low_complexity 1 23 0 1076 219 0 5 chr15 52906950 52907151 -32788603 - AluJo SINE Alu -92 220 21 13038 73 3 4 chr15 52907151 52909001 -32786753 - L1P LINE L1 -4218 1928 80 204 229 49 0 chr15 52909471 52909532 -32786222 + GA-rich Low_complexity Low_complexity 2 65 0 221 319 149 0 chr15 52909834 52909928 -32785826 + L2 LINE L2 2934 3041 -231 605 164 79 26 chr15 52911345 52911497 -32784257 - MIR SINE MIR -78 184 25 308 354 40 58 chr15 52913445 52913840 -32781914 - L2 LINE L2 -862 2452 2065 243 278 0 0 chr15 52914514 52914640 -32781114 + (CTGGGG)n Simple_repeat Simple_repeat 1 126 0 1646 176 22 0 chr15 52917019 52917291 -32778463 - AluJb SINE Alu -24 288 11 2078 134 0 10 chr15 52918031 52918374 -32777380 + AluSx SINE Alu 1 340 0 181 54 0 54 chr15 52920968 52921005 -32774749 + (CGGGG)n Simple_repeat Simple_repeat 4 38 0 403 279 143 13 chr15 52921208 52921362 -32774392 + MIR SINE MIR 67 240 -22 371 201 221 20 chr15 52922043 52922192 -32773562 - MIR3 SINE MIR -21 187 9 239 226 60 36 chr15 52922662 52922746 -32773008 + MIR SINE MIR 81 166 -96 519 138 0 0 chr15 52923273 52923360 -32772394 + (GA)n Simple_repeat Simple_repeat 1 87 0 860 162 83 71 chr15 52923360 52923613 -32772141 - MER93b LTR ERV1 -5 368 113 274 50 0 0 chr15 52923613 52923653 -32772101 - MER93b LTR ERV1 -220 153 114 278 91 0 0 chr15 52923688 52923732 -32772022 - MER93b LTR ERV1 -217 156 113 * 306 45 0 0 chr15 52923729 52923773 -32771981 - MER93b LTR ERV1 -217 156 113 * 516 178 24 101 chr15 52923770 52923886 -32771868 - MER93b LTR ERV1 -217 156 55 843 141 0 63 chr15 52923886 52924028 -32771726 + FLAM_C SINE Alu 1 133 0 516 178 24 101 chr15 52924028 52924080 -32771674 - MER93b LTR ERV1 -318 55 1 1630 165 35 25 chr15 52924269 52924674 -32771080 + LTR37A LTR ERV1 18 426 0 220 373 0 0 chr15 52926304 52926414 -32769340 + (CCCTAG)n Simple_repeat Simple_repeat 2 111 0 189 262 33 0 chr15 52928305 52928366 -32767388 - MIR SINE MIR -78 130 68 219 368 0 17 chr15 52930309 52930483 -32765271 + (CACCAT)n Simple_repeat Simple_repeat 3 173 0 649 308 123 31 chr15 52931167 52931622 -32764132 - L2 LINE L2 0 3313 2817 1566 140 0 0 chr15 52931772 52932000 -32763754 - AluJb SINE Alu -82 230 3 184 259 52 44 chr15 52932042 52932177 -32763577 - L2 LINE L2 -623 2691 2556 237 303 98 25 chr15 52932436 52932558 -32763196 + MIR SINE MIR 17 147 -61 301 286 168 0 chr15 52932834 52932953 -32762801 - L3 LINE CR1 -116 1461 1323 447 286 27 0 chr15 52933383 52933495 -32762259 - MIR SINE MIR -67 195 81 195 284 0 54 chr15 52934948 52935022 -32760732 + MIR SINE MIR 81 150 -112 1538 250 18 3 chr15 52935929 52936265 -32759489 - MER58B DNA MER1_type 0 341 1 180 287 155 31 chr15 52938563 52938692 -32757062 - MIR3 SINE MIR -63 145 1 278 242 202 10 chr15 52940877 52940976 -32754778 - MIR SINE MIR -96 166 49 504 184 12 12 chr15 53042934 53043097 -32652657 + (GAATG)n Satellite Satellite 4 166 0 456 211 0 0 chr15 53043186 53043333 -32652421 + (GAATG)n Satellite Satellite 3 149 0 978 141 0 4 chr15 53043371 53043723 -32652031 + (GAATG)n Satellite Satellite 1 528 0 869 150 0 12 chr15 53043735 53044161 -32651593 + (GAATG)n Satellite Satellite 1 420 0 384 200 0 0 chr15 53044182 53044282 -32651472 + (GAATG)n Satellite Satellite 4 103 0 930 169 2 0 chr15 53044321 53044988 -32650766 + (GAATG)n Satellite Satellite 1 668 0 599 194 0 14 chr15 53045038 53045477 -32650277 + (GAATG)n Satellite Satellite 1 432 0 800 139 0 10 chr15 53045495 53045710 -32650044 + (GAATG)n Satellite Satellite 1 212 0 954 133 3 0 chr15 53045751 53046075 -32649679 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53046161 53046390 -32649364 + (GAATG)n Satellite Satellite 1 229 0 805 175 7 3 chr15 53046416 53046716 -32649038 + (GAATG)n Satellite Satellite 1 301 0 990 136 0 3 chr15 53046781 53047217 -32648537 + (GAATG)n Satellite Satellite 4 608 0 902 150 0 12 chr15 53047229 53047655 -32648099 + (GAATG)n Satellite Satellite 1 420 0 396 200 0 0 chr15 53047676 53047776 -32647978 + (GAATG)n Satellite Satellite 4 103 0 909 170 2 0 chr15 53047815 53048482 -32647272 + (GAATG)n Satellite Satellite 1 668 0 583 189 0 14 chr15 53048532 53048968 -32646786 + (GAATG)n Satellite Satellite 1 430 0 755 143 0 10 chr15 53048989 53049204 -32646550 + (GAATG)n Satellite Satellite 1 212 0 954 136 3 0 chr15 53049245 53049569 -32646185 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53049655 53049884 -32645870 + (GAATG)n Satellite Satellite 1 229 0 739 185 7 3 chr15 53049904 53050205 -32645549 + (GAATG)n Satellite Satellite 1 302 0 990 136 0 3 chr15 53050270 53050706 -32645048 + (GAATG)n Satellite Satellite 4 608 0 902 150 0 12 chr15 53050718 53051144 -32644610 + (GAATG)n Satellite Satellite 1 420 0 396 200 0 0 chr15 53051165 53051265 -32644489 + (GAATG)n Satellite Satellite 4 103 0 930 172 2 0 chr15 53051304 53051971 -32643783 + (GAATG)n Satellite Satellite 1 668 0 566 187 0 14 chr15 53052021 53052460 -32643294 + (GAATG)n Satellite Satellite 1 432 0 743 143 0 10 chr15 53052478 53052693 -32643061 + (GAATG)n Satellite Satellite 1 212 0 954 142 2 2 chr15 53052704 53053058 -32642696 + (GAATG)n Satellite Satellite 1 535 0 879 137 0 0 chr15 53053144 53053373 -32642381 + (GAATG)n Satellite Satellite 1 229 0 673 173 7 7 chr15 53053399 53053685 -32642069 + (GAATG)n Satellite Satellite 1 286 0 1176 128 0 13 chr15 53053765 53054386 -32641368 + (GAATG)n Satellite Satellite 1 790 0 737 174 0 8 chr15 53054397 53054797 -32640957 + (GAATG)n Satellite Satellite 1 396 0 987 140 3 0 chr15 53054821 53055140 -32640614 + (GAATG)n Satellite Satellite 1 320 0 846 142 0 0 chr15 53055226 53055455 -32640299 + (GAATG)n Satellite Satellite 1 229 0 706 188 7 3 chr15 53055475 53055776 -32639978 + (GAATG)n Satellite Satellite 1 302 0 486 151 0 0 chr15 53055820 53055926 -32639828 + (GAATG)n Satellite Satellite 4 109 0 981 113 0 0 chr15 53055944 53056121 -32639633 + (GAATG)n Satellite Satellite 4 180 0 921 145 0 0 chr15 53056160 53056339 -32639415 + (GAATG)n Satellite Satellite 1 179 0 1113 134 0 0 chr15 53056350 53056816 -32638938 + (GAATG)n Satellite Satellite 1 466 0 756 159 0 0 chr15 53056840 53057016 -32638738 + (GAATG)n Satellite Satellite 4 179 0 384 200 0 0 chr15 53057051 53057151 -32638603 + (GAATG)n Satellite Satellite 4 103 0 682 173 6 6 chr15 53057190 53057363 -32638391 + (GAATG)n Satellite Satellite 3 175 0 819 168 2 0 chr15 53057390 53057857 -32637897 + (GAATG)n Satellite Satellite 1 468 0 387 233 0 0 chr15 53057874 53058050 -32637704 + (GAATG)n Satellite Satellite 4 179 0 703 134 0 32 chr15 53058083 53058269 -32637485 + (GAATG)n Satellite Satellite 1 180 0 851 138 0 11 chr15 53058314 53058495 -32637259 + (GAATG)n Satellite Satellite 2 180 0 900 145 0 2 chr15 53058510 53058866 -32636888 + (GAATG)n Satellite Satellite 1 536 0 220 254 0 0 chr15 53058877 53058940 -32636814 + (GAATG)n Satellite Satellite 2 64 0 930 164 0 5 chr15 53058952 53059371 -32636383 + (GAATG)n Satellite Satellite 2 593 0 246 116 0 0 chr15 53059372 53059415 -32636339 + (AATTG)n Simple_repeat Simple_repeat 3 45 0 746 165 0 18 chr15 53059432 53059703 -32636051 + (GAATG)n Satellite Satellite 1 265 0 453 218 0 0 chr15 53059757 53059922 -32635832 + (GAATG)n Satellite Satellite 4 168 0 999 112 0 0 chr15 53059985 53060164 -32635590 + (GAATG)n Satellite Satellite 2 180 0 192 184 0 0 chr15 53060194 53060243 -32635511 + (GAATG)n Satellite Satellite 3 51 0 825 157 0 0 chr15 53060260 53060617 -32635137 + (GAATG)n Satellite Satellite 1 357 0 447 217 0 0 chr15 53060630 53060787 -32634967 + (GAATG)n Satellite Satellite 4 160 0 1191 133 1 5 chr15 53060831 53061585 -32634169 + (GAATG)n Satellite Satellite 1 927 0 711 164 0 0 chr15 53061616 53061787 -32633967 + (GAATG)n Satellite Satellite 4 174 0 384 200 0 0 chr15 53061822 53061922 -32633832 + (GAATG)n Satellite Satellite 4 103 0 694 173 6 6 chr15 53061961 53062134 -32633620 + (GAATG)n Satellite Satellite 3 175 0 990 165 0 6 chr15 53062150 53063388 -32632366 + (GAATG)n Satellite Satellite 1 1406 0 891 131 0 0 chr15 53063407 53063722 -32632032 + (GAATG)n Satellite Satellite 1 315 0 220 254 0 0 chr15 53063733 53063796 -32631958 + (GAATG)n Satellite Satellite 2 64 0 894 180 0 0 chr15 53063808 53064152 -32631602 + (GAATG)n Satellite Satellite 1 344 0 794 177 0 13 chr15 53064170 53064549 -32631205 + (GAATG)n Satellite Satellite 1 373 0 486 212 0 0 chr15 53064603 53064768 -32630986 + (GAATG)n Satellite Satellite 4 168 0 999 112 0 0 chr15 53064831 53065010 -32630744 + (GAATG)n Satellite Satellite 2 180 0 213 163 0 0 chr15 53065040 53065089 -32630665 + (GAATG)n Satellite Satellite 3 51 0 825 157 0 0 chr15 53065106 53065463 -32630291 + (GAATG)n Satellite Satellite 1 357 0 441 204 0 0 chr15 53065476 53065618 -32630136 + (GAATG)n Satellite Satellite 4 145 0 972 140 0 8 chr15 53065677 53065999 -32629755 + (GAATG)n Satellite Satellite 4 494 0 1158 87 0 0 chr15 53066015 53066188 -32629566 + (GAATG)n Satellite Satellite 3 175 0 794 141 0 27 chr15 53066230 53066415 -32629339 + (GAATG)n Satellite Satellite 1 180 0 726 171 0 0 chr15 53066441 53066617 -32629137 + (GAATG)n Satellite Satellite 4 179 0 405 190 0 0 chr15 53066652 53066752 -32629002 + (GAATG)n Satellite Satellite 4 103 0 1059 165 1 2 chr15 53066791 53068233 -32627521 + (GAATG)n Satellite Satellite 1 1619 0 999 145 3 3 chr15 53068257 53068614 -32627140 + (GAATG)n Satellite Satellite 1 357 0 420 211 0 0 chr15 53068653 53068805 -32626949 + (GAATG)n Satellite Satellite 3 154 0 915 139 0 0 chr15 53068817 53068997 -32626757 + (GAATG)n Satellite Satellite 1 180 0 818 161 0 13 chr15 53069013 53069399 -32626355 + (GAATG)n Satellite Satellite 1 380 0 528 200 0 0 chr15 53069453 53069618 -32626136 + (GAATG)n Satellite Satellite 4 168 0 978 117 0 0 chr15 53069681 53069860 -32625894 + (GAATG)n Satellite Satellite 2 180 0 824 151 0 18 chr15 53069890 53070166 -32625588 + (GAATG)n Satellite Satellite 1 270 0 721 190 3 3 chr15 53070177 53070483 -32625271 + (GAATG)n Satellite Satellite 1 306 0 489 160 0 0 chr15 53070527 53070633 -32625121 + (GAATG)n Satellite Satellite 4 109 0 1122 111 0 2 chr15 53070651 53071009 -32624745 + (GAATG)n Satellite Satellite 1 536 0 832 156 0 12 chr15 53071021 53071438 -32624316 + (GAATG)n Satellite Satellite 1 411 0 459 170 0 0 chr15 53071473 53071573 -32624181 + (GAATG)n Satellite Satellite 4 103 0 1017 164 1 3 chr15 53071612 53073059 -32622695 + (GAATG)n Satellite Satellite 2 1622 0 912 156 3 3 chr15 53073083 53073440 -32622314 + (GAATG)n Satellite Satellite 1 357 0 939 162 0 0 chr15 53073479 53074141 -32621613 + (GAATG)n Satellite Satellite 1 662 0 225 280 11 0 chr15 53074163 53074256 -32621498 + (GAATG)n Satellite Satellite 1 94 0 432 206 0 0 chr15 53074267 53074403 -32621351 + (GAATG)n Satellite Satellite 4 139 0 957 123 0 0 chr15 53074466 53074645 -32621109 + (GAATG)n Satellite Satellite 2 180 0 444 194 0 0 chr15 53074675 53074809 -32620945 + (GAATG)n Satellite Satellite 3 136 0 408 153 0 0 chr15 53074919 53075004 -32620750 + (GAATG)n Satellite Satellite 4 88 0 990 132 0 0 chr15 53075022 53075345 -32620409 + (GAATG)n Satellite Satellite 1 323 0 902 152 0 12 chr15 53075357 53075783 -32619971 + (GAATG)n Satellite Satellite 1 420 0 342 220 0 0 chr15 53075804 53075904 -32619850 + (GAATG)n Satellite Satellite 4 103 0 753 176 0 0 chr15 53075943 53076119 -32619635 + (GAATG)n Satellite Satellite 5 180 0 843 167 2 0 chr15 53076137 53076610 -32619144 + (GAATG)n Satellite Satellite 1 474 0 583 178 0 25 chr15 53076660 53077096 -32618658 + (GAATG)n Satellite Satellite 1 424 0 791 146 0 11 chr15 53077129 53077307 -32618447 + (GAATG)n Satellite Satellite 2 177 0 933 142 3 0 chr15 53077358 53077682 -32618072 + (GAATG)n Satellite Satellite 1 325 0 878 179 0 16 chr15 53077693 53077997 -32617757 + (GAATG)n Satellite Satellite 1 299 0 739 188 7 3 chr15 53078017 53078318 -32617436 + (GAATG)n Satellite Satellite 1 302 0 477 160 0 0 chr15 53078362 53078468 -32617286 + (GAATG)n Satellite Satellite 4 109 0 981 113 0 0 chr15 53078487 53078664 -32617090 + (GAATG)n Satellite Satellite 3 179 0 900 151 0 0 chr15 53078682 53078861 -32616893 + (GAATG)n Satellite Satellite 1 179 0 836 140 0 14 chr15 53078872 53079223 -32616531 + (GAATG)n Satellite Satellite 1 345 0 396 200 0 0 chr15 53079258 53079358 -32616396 + (GAATG)n Satellite Satellite 4 103 0 909 170 2 0 chr15 53079397 53080064 -32615690 + (GAATG)n Satellite Satellite 1 668 0 743 184 0 4 chr15 53080085 53080786 -32614968 + (GAATG)n Satellite Satellite 1 697 0 954 133 3 0 chr15 53080827 53081151 -32614603 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53081237 53081466 -32614288 + (GAATG)n Satellite Satellite 1 229 0 718 188 7 3 chr15 53081486 53081787 -32613967 + (GAATG)n Satellite Satellite 1 302 0 783 152 0 0 chr15 53081852 53082030 -32613724 + (GAATG)n Satellite Satellite 1 178 0 1083 102 0 0 chr15 53082060 53082237 -32613517 + (GAATG)n Satellite Satellite 4 180 0 806 136 0 27 chr15 53082260 53082444 -32613310 + (GAATG)n Satellite Satellite 2 180 0 761 137 0 27 chr15 53082476 53082659 -32613095 + (GAATG)n Satellite Satellite 2 179 0 429 190 0 0 chr15 53082707 53082807 -32612947 + (GAATG)n Satellite Satellite 4 103 0 777 171 0 0 chr15 53082847 53083022 -32612732 + (GAATG)n Satellite Satellite 5 179 0 903 161 2 0 chr15 53083046 53083480 -32612274 + (GAATG)n Satellite Satellite 1 435 0 599 187 0 14 chr15 53083528 53083967 -32611787 + (GAATG)n Satellite Satellite 1 432 0 758 172 0 9 chr15 53083997 53084226 -32611528 + (GAATG)n Satellite Satellite 1 226 0 860 142 3 3 chr15 53084241 53084566 -32611188 + (GAATG)n Satellite Satellite 1 325 0 879 146 0 0 chr15 53084652 53084881 -32610873 + (GAATG)n Satellite Satellite 1 229 0 1077 160 2 3 chr15 53084901 53085703 -32610051 + (GAATG)n Satellite Satellite 4 975 0 902 147 0 12 chr15 53085715 53086114 -32609640 + (GAATG)n Satellite Satellite 1 394 0 330 220 0 0 chr15 53086162 53086262 -32609492 + (GAATG)n Satellite Satellite 4 103 0 803 174 2 1 chr15 53086301 53086969 -32608785 + (GAATG)n Satellite Satellite 1 668 0 534 196 0 0 chr15 53086990 53087244 -32608510 + (GAATG)n Satellite Satellite 1 254 0 599 172 0 6 chr15 53087284 53087458 -32608296 + (GAATG)n Satellite Satellite 3 175 0 755 144 0 9 chr15 53087470 53087691 -32608063 + (GAATG)n Satellite Satellite 1 218 0 879 149 3 0 chr15 53087732 53088056 -32607698 + (GAATG)n Satellite Satellite 1 325 0 747 160 0 0 chr15 53088142 53088317 -32607437 + (GAATG)n Satellite Satellite 5 179 0 846 144 0 0 chr15 53088336 53088516 -32607238 + (GAATG)n Satellite Satellite 1 180 0 468 210 0 0 chr15 53088541 53088698 -32607056 + (GAATG)n Satellite Satellite 4 160 0 1107 143 0 4 chr15 53088763 53089637 -32606117 + (GAATG)n Satellite Satellite 4 1047 0 354 220 0 0 chr15 53089658 53089758 -32605996 + (GAATG)n Satellite Satellite 4 103 0 753 184 2 0 chr15 53089797 53090461 -32605293 + (GAATG)n Satellite Satellite 1 665 0 539 200 0 17 chr15 53090509 53090854 -32604900 + (GAATG)n Satellite Satellite 1 338 0 755 149 0 6 chr15 53090866 53091181 -32604573 + (GAATG)n Satellite Satellite 1 312 0 954 136 3 0 chr15 53091222 53091546 -32604208 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53091632 53091861 -32603893 + (GAATG)n Satellite Satellite 1 229 0 715 186 3 3 chr15 53091879 53092183 -32603571 + (GAATG)n Satellite Satellite 1 304 0 954 144 0 0 chr15 53092248 53092606 -32603148 + (GAATG)n Satellite Satellite 1 358 0 192 158 0 0 chr15 53092626 53092664 -32603090 + (GAATG)n Satellite Satellite 3 40 0 902 114 0 27 chr15 53092676 53092860 -32602894 + (GAATG)n Satellite Satellite 2 180 0 705 167 0 0 chr15 53092901 53093075 -32602679 + (GAATG)n Satellite Satellite 2 175 0 342 220 0 0 chr15 53093123 53093223 -32602531 + (GAATG)n Satellite Satellite 4 103 0 870 175 2 0 chr15 53093262 53093926 -32601828 + (GAATG)n Satellite Satellite 1 665 0 375 208 0 0 chr15 53093945 53094070 -32601684 + (GAATG)n Satellite Satellite 5 129 0 510 211 0 0 chr15 53094089 53094264 -32601490 + (GAATG)n Satellite Satellite 1 175 0 203 184 0 20 chr15 53094270 53094319 -32601435 + (CAATG)n Simple_repeat Simple_repeat 2 49 0 692 162 10 0 chr15 53094332 53094647 -32601107 + (GAATG)n Satellite Satellite 1 318 0 639 135 0 0 chr15 53094689 53094822 -32600932 + (GAATG)n Satellite Satellite 2 134 0 785 145 6 0 chr15 53094838 53095017 -32600737 + (GAATG)n Satellite Satellite 1 180 0 879 142 0 0 chr15 53095103 53095332 -32600422 + (GAATG)n Satellite Satellite 1 229 0 706 187 3 3 chr15 53095352 53095654 -32600100 + (GAATG)n Satellite Satellite 1 302 0 969 127 0 21 chr15 53095702 53096130 -32599624 + (GAATG)n Satellite Satellite 3 593 0 902 114 0 27 chr15 53096142 53096326 -32599428 + (GAATG)n Satellite Satellite 2 180 0 728 142 0 27 chr15 53096358 53096541 -32599213 + (GAATG)n Satellite Satellite 2 179 0 396 200 0 0 chr15 53096589 53096689 -32599065 + (GAATG)n Satellite Satellite 4 103 0 852 166 2 0 chr15 53096728 53097374 -32598380 + (GAATG)n Satellite Satellite 1 647 0 620 183 0 14 chr15 53097440 53097879 -32597875 + (GAATG)n Satellite Satellite 1 432 0 755 143 0 10 chr15 53097897 53098112 -32597642 + (GAATG)n Satellite Satellite 1 212 0 921 136 3 0 chr15 53098153 53098477 -32597277 + (GAATG)n Satellite Satellite 1 325 0 900 137 0 0 chr15 53098563 53098792 -32596962 + (GAATG)n Satellite Satellite 1 229 0 739 180 7 4 chr15 53098812 53099098 -32596656 + (GAATG)n Satellite Satellite 1 287 0 741 163 0 0 chr15 53099177 53099355 -32596399 + (GAATG)n Satellite Satellite 1 178 0 1089 115 0 0 chr15 53099383 53099613 -32596141 + (GAATG)n Satellite Satellite 1 230 0 902 150 0 12 chr15 53099625 53100051 -32595703 + (GAATG)n Satellite Satellite 1 420 0 417 190 0 0 chr15 53100072 53100172 -32595582 + (GAATG)n Satellite Satellite 4 103 0 786 163 5 12 chr15 53100211 53100633 -32595121 + (GAATG)n Satellite Satellite 1 419 0 972 163 2 4 chr15 53100653 53101010 -32594744 + (GAATG)n Satellite Satellite 1 534 0 875 160 0 5 chr15 53101043 53101627 -32594127 + (GAATG)n Satellite Satellite 1 580 0 933 143 0 14 chr15 53101646 53102008 -32593746 + (GAATG)n Satellite Satellite 1 357 0 357 198 0 0 chr15 53102047 53102153 -32593601 + (GAATG)n Satellite Satellite 4 109 0 822 172 0 0 chr15 53102202 53102441 -32593313 + (GAATG)n Satellite Satellite 1 239 0 234 116 0 0 chr15 53102442 53102485 -32593269 + (AATTG)n Simple_repeat Simple_repeat 3 45 0 972 157 0 0 chr15 53102502 53102798 -32592956 + (GAATG)n Satellite Satellite 1 296 0 492 205 0 0 chr15 53102876 53103032 -32592722 + (GAATG)n Satellite Satellite 4 159 0 957 123 0 0 chr15 53103095 53103274 -32592480 + (GAATG)n Satellite Satellite 2 180 0 891 156 0 0 chr15 53103304 53103580 -32592174 + (GAATG)n Satellite Satellite 1 276 0 688 190 3 3 chr15 53103591 53103897 -32591857 + (GAATG)n Satellite Satellite 1 306 0 849 140 0 0 chr15 53103962 53104140 -32591614 + (GAATG)n Satellite Satellite 1 178 0 1019 102 6 0 chr15 53104170 53104347 -32591407 + (GAATG)n Satellite Satellite 3 180 0 1281 85 0 0 chr15 53104364 53104627 -32591127 + (GAATG)n Satellite Satellite 1 263 0 869 146 0 12 chr15 53104639 53105056 -32590698 + (GAATG)n Satellite Satellite 1 411 0 426 180 0 0 chr15 53105091 53105191 -32590563 + (GAATG)n Satellite Satellite 4 103 0 1035 163 2 2 chr15 53105230 53105923 -32589831 + (GAATG)n Satellite Satellite 1 693 0 489 212 0 0 chr15 53105979 53106158 -32589596 + (GAATG)n Satellite Satellite 1 179 0 694 140 0 32 chr15 53106213 53106399 -32589355 + (GAATG)n Satellite Satellite 1 180 0 830 144 0 11 chr15 53106444 53106625 -32589129 + (GAATG)n Satellite Satellite 2 180 0 900 158 0 0 chr15 53106676 53107036 -32588718 + (GAATG)n Satellite Satellite 1 360 0 411 195 0 0 chr15 53107077 53107200 -32588554 + (GAATG)n Satellite Satellite 2 124 0 822 157 0 0 chr15 53107237 53107415 -32588339 + (GAATG)n Satellite Satellite 2 179 0 1143 159 1 8 chr15 53107427 53108142 -32587612 + (GAATG)n Satellite Satellite 1 888 0 903 134 0 0 chr15 53108190 53108369 -32587385 + (GAATG)n Satellite Satellite 2 180 0 924 152 0 0 chr15 53108405 53108675 -32587079 + (GAATG)n Satellite Satellite 1 270 0 1077 164 1 2 chr15 53108686 53109503 -32586251 + (GAATG)n Satellite Satellite 1 996 0 872 120 0 27 chr15 53109521 53109704 -32586050 + (GAATG)n Satellite Satellite 2 179 0 705 159 0 0 chr15 53109756 53109919 -32585835 + (GAATG)n Satellite Satellite 2 164 0 405 163 0 0 chr15 53109967 53110059 -32585695 + (GAATG)n Satellite Satellite 2 93 0 660 153 13 6 chr15 53110106 53110263 -32585491 + (GAATG)n Satellite Satellite 3 160 0 483 164 0 0 chr15 53110294 53110398 -32585356 + (GAATG)n Satellite Satellite 2 105 0 858 155 0 0 chr15 53110418 53110769 -32584985 + (GAATG)n Satellite Satellite 1 351 0 217 220 0 0 chr15 53110780 53110830 -32584924 + (GAATG)n Satellite Satellite 5 54 0 930 172 0 15 chr15 53110855 53111270 -32584484 + (GAATG)n Satellite Satellite 1 447 -197 234 116 0 0 chr15 53111270 53111313 -32584441 + (AATTG)n Simple_repeat Simple_repeat 3 45 0 930 172 0 15 chr15 53111313 53111330 -32584424 + (GAATG)n Satellite Satellite 447 644 0 903 134 0 0 chr15 53111330 53111509 -32584245 + (GAATG)n Satellite Satellite 1 179 0 486 212 0 0 chr15 53111655 53111820 -32583934 + (GAATG)n Satellite Satellite 4 168 0 888 133 0 0 chr15 53111878 53112058 -32583696 + (GAATG)n Satellite Satellite 1 180 0 825 163 0 0 chr15 53112092 53112368 -32583386 + (GAATG)n Satellite Satellite 1 276 0 706 169 4 4 chr15 53112388 53112645 -32583109 + (GAATG)n Satellite Satellite 1 257 0 435 189 0 0 chr15 53112734 53112866 -32582888 + (GAATG)n Satellite Satellite 3 134 0 864 149 2 0 chr15 53112976 53113389 -32582365 + (GAATG)n Satellite Satellite 1 414 0 384 200 0 0 chr15 53113410 53113535 -32582219 + (GAATG)n Satellite Satellite 5 129 0 722 174 0 5 chr15 53113554 53114111 -32581643 + (GAATG)n Satellite Satellite 1 553 0 954 133 3 0 chr15 53114152 53114476 -32581278 + (GAATG)n Satellite Satellite 1 325 0 1014 152 0 0 chr15 53114562 53115154 -32580600 + (GAATG)n Satellite Satellite 1 592 0 869 155 0 12 chr15 53115166 53115592 -32580162 + (GAATG)n Satellite Satellite 1 420 0 396 200 0 0 chr15 53115613 53115713 -32580041 + (GAATG)n Satellite Satellite 4 103 0 930 165 3 7 chr15 53115752 53116419 -32579335 + (GAATG)n Satellite Satellite 1 664 0 743 179 0 4 chr15 53116440 53117141 -32578613 + (GAATG)n Satellite Satellite 1 697 0 954 136 3 0 chr15 53117182 53117506 -32578248 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53117592 53117821 -32577933 + (GAATG)n Satellite Satellite 1 229 0 722 166 3 6 chr15 53117832 53118151 -32577603 + (GAATG)n Satellite Satellite 1 318 0 954 133 3 0 chr15 53118192 53118516 -32577238 + (GAATG)n Satellite Satellite 1 325 0 879 173 3 3 chr15 53118527 53118831 -32576923 + (GAATG)n Satellite Satellite 1 304 0 739 162 8 4 chr15 53118851 53119107 -32576647 + (GAATG)n Satellite Satellite 1 257 0 468 152 0 0 chr15 53119196 53119295 -32576459 + (GAATG)n Satellite Satellite 1 99 0 999 125 0 2 chr15 53119318 53119673 -32576081 + (GAATG)n Satellite Satellite 1 533 0 868 139 0 24 chr15 53119685 53120097 -32575657 + (GAATG)n Satellite Satellite 1 402 0 405 190 0 0 chr15 53120132 53120232 -32575522 + (GAATG)n Satellite Satellite 4 103 0 938 163 3 9 chr15 53120271 53120943 -32574811 + (GAATG)n Satellite Satellite 1 668 0 703 168 0 25 chr15 53120993 53121429 -32574325 + (GAATG)n Satellite Satellite 1 424 0 872 133 0 11 chr15 53121474 53121655 -32574099 + (GAATG)n Satellite Satellite 2 180 0 933 141 0 2 chr15 53121670 53122021 -32573733 + (GAATG)n Satellite Satellite 1 531 0 220 254 0 0 chr15 53122032 53122095 -32573659 + (GAATG)n Satellite Satellite 2 64 0 930 162 0 6 chr15 53122107 53122465 -32573289 + (GAATG)n Satellite Satellite 2 533 0 806 165 0 13 chr15 53122477 53122858 -32572896 + (GAATG)n Satellite Satellite 1 375 0 474 212 0 0 chr15 53122912 53123077 -32572677 + (GAATG)n Satellite Satellite 4 168 0 966 117 0 0 chr15 53123140 53123319 -32572435 + (GAATG)n Satellite Satellite 2 180 0 858 159 0 0 chr15 53123349 53123625 -32572129 + (GAATG)n Satellite Satellite 1 276 0 1032 156 2 2 chr15 53123645 53124472 -32571282 + (GAATG)n Satellite Satellite 1 1007 0 857 148 0 12 chr15 53124484 53124901 -32570853 + (GAATG)n Satellite Satellite 1 411 0 393 190 0 0 chr15 53124936 53125036 -32570718 + (GAATG)n Satellite Satellite 4 103 0 911 160 3 9 chr15 53125075 53125744 -32570010 + (GAATG)n Satellite Satellite 1 665 0 675 189 0 3 chr15 53125763 53126140 -32569614 + (GAATG)n Satellite Satellite 1 376 0 966 162 1 5 chr15 53126247 53127611 -32568143 + (GAATG)n Satellite Satellite 1 1535 0 872 137 6 0 chr15 53127652 53127975 -32567779 + (GAATG)n Satellite Satellite 1 325 0 870 142 0 0 chr15 53128061 53128289 -32567465 + (GAATG)n Satellite Satellite 1 228 0 739 187 3 3 chr15 53128310 53128612 -32567142 + (GAATG)n Satellite Satellite 1 302 0 1041 140 0 0 chr15 53128677 53129098 -32566656 + (GAATG)n Satellite Satellite 1 421 0 901 141 0 23 chr15 53129110 53129541 -32566213 + (GAATG)n Satellite Satellite 1 421 0 396 200 0 0 chr15 53129562 53129662 -32566092 + (GAATG)n Satellite Satellite 4 103 0 930 173 1 3 chr15 53129701 53131090 -32564664 + (GAATG)n Satellite Satellite 1 1566 0 954 133 3 0 chr15 53131131 53131455 -32564299 + (GAATG)n Satellite Satellite 1 325 0 858 146 0 0 chr15 53131541 53131770 -32563984 + (GAATG)n Satellite Satellite 1 229 0 739 184 3 3 chr15 53131790 53132092 -32563662 + (GAATG)n Satellite Satellite 1 302 0 996 138 0 6 chr15 53132157 53132603 -32563151 + (GAATG)n Satellite Satellite 4 619 0 848 154 0 12 chr15 53132615 53133041 -32562713 + (GAATG)n Satellite Satellite 1 420 0 417 190 0 0 chr15 53133062 53133162 -32562592 + (GAATG)n Satellite Satellite 4 103 0 942 169 0 0 chr15 53133201 53133869 -32561885 + (GAATG)n Satellite Satellite 1 668 0 632 185 0 14 chr15 53133919 53134358 -32561396 + (GAATG)n Satellite Satellite 1 432 0 701 153 0 10 chr15 53134376 53134591 -32561163 + (GAATG)n Satellite Satellite 1 212 0 999 134 3 0 chr15 53134632 53134956 -32560798 + (GAATG)n Satellite Satellite 1 325 0 891 187 0 0 chr15 53134967 53135261 -32560493 + (GAATG)n Satellite Satellite 1 294 0 739 184 3 3 chr15 53135281 53135583 -32560171 + (GAATG)n Satellite Satellite 1 302 0 351 184 0 0 chr15 53135631 53135718 -32560036 + (GAATG)n Satellite Satellite 4 90 0 857 131 0 4 chr15 53135736 53135820 -32559934 + (GAATG)n Satellite Satellite 1 248 0 1032 119 0 0 chr15 53135820 53136094 -32559660 + (GAATG)n Satellite Satellite 1 274 0 847 140 0 24 chr15 53136106 53136523 -32559231 + (GAATG)n Satellite Satellite 1 407 0 938 163 3 9 chr15 53136558 53137369 -32558385 + (GAATG)n Satellite Satellite 1 806 0 603 200 0 0 chr15 53137390 53137711 -32558043 + (GAATG)n Satellite Satellite 1 321 0 755 136 0 12 chr15 53137735 53137897 -32557857 + (GAATG)n Satellite Satellite 5 164 0 933 143 0 14 chr15 53137916 53138278 -32557476 + (GAATG)n Satellite Satellite 1 357 0 918 162 0 9 chr15 53138317 53139063 -32556691 + (GAATG)n Satellite Satellite 2 915 0 474 212 0 0 chr15 53139117 53139282 -32556472 + (GAATG)n Satellite Satellite 4 168 0 782 147 0 0 chr15 53139315 53139492 -32556262 + (GAATG)n Satellite Satellite 4 180 0 879 142 0 0 chr15 53139607 53140031 -32555723 + (GAATG)n Satellite Satellite 1 424 0 721 179 3 3 chr15 53140072 53140363 -32555391 + (GAATG)n Satellite Satellite 1 291 0 498 151 0 0 chr15 53140422 53140528 -32555226 + (GAATG)n Satellite Satellite 4 109 0 1107 108 0 0 chr15 53140546 53140916 -32554838 + (GAATG)n Satellite Satellite 1 370 0 1446 60 0 0 chr15 53140931 53141169 -32554585 + (GAATG)n Satellite Satellite 1 238 0 836 151 0 12 chr15 53141181 53141598 -32554156 + (GAATG)n Satellite Satellite 1 411 0 438 180 0 0 chr15 53141633 53141733 -32554021 + (GAATG)n Satellite Satellite 4 103 0 927 172 2 2 chr15 53141772 53142596 -32553158 + (GAATG)n Satellite Satellite 1 824 0 725 178 0 5 chr15 53142615 53143198 -32552556 + (GAATG)n Satellite Satellite 1 579 0 966 131 2 2 chr15 53143213 53143537 -32552217 + (GAATG)n Satellite Satellite 1 505 0 735 160 0 0 chr15 53143623 53143798 -32551956 + (GAATG)n Satellite Satellite 5 179 0 813 150 0 0 chr15 53143812 53143992 -32551762 + (GAATG)n Satellite Satellite 1 180 0 435 217 0 0 chr15 53144017 53144174 -32551580 + (GAATG)n Satellite Satellite 4 160 0 402 189 0 0 chr15 53144218 53144324 -32551430 + (GAATG)n Satellite Satellite 4 109 0 1167 114 0 2 chr15 53144347 53144707 -32551047 + (GAATG)n Satellite Satellite 1 540 0 828 173 0 0 chr15 53144732 53145153 -32550601 + (GAATG)n Satellite Satellite 1 421 0 396 200 0 0 chr15 53145174 53145274 -32550480 + (GAATG)n Satellite Satellite 4 103 0 936 169 2 2 chr15 53145313 53145983 -32549771 + (GAATG)n Satellite Satellite 1 670 0 725 183 1 6 chr15 53146002 53146729 -32549025 + (GAATG)n Satellite Satellite 1 723 0 933 136 3 0 chr15 53146744 53147068 -32548686 + (GAATG)n Satellite Satellite 1 324 0 879 142 0 0 chr15 53147154 53147383 -32548371 + (GAATG)n Satellite Satellite 1 229 0 669 190 7 7 chr15 53147394 53147700 -32548054 + (GAATG)n Satellite Satellite 1 306 0 423 179 0 0 chr15 53147744 53147850 -32547904 + (GAATG)n Satellite Satellite 4 109 0 1146 118 0 2 chr15 53147868 53148228 -32547526 + (GAATG)n Satellite Satellite 1 540 0 828 171 0 0 chr15 53148253 53148674 -32547080 + (GAATG)n Satellite Satellite 1 421 0 378 176 0 0 chr15 53148695 53148780 -32546974 + (GAATG)n Satellite Satellite 4 88 0 912 168 2 0 chr15 53148834 53149502 -32546252 + (GAATG)n Satellite Satellite 1 669 0 713 182 0 4 chr15 53149523 53150199 -32545555 + (GAATG)n Satellite Satellite 1 672 0 933 136 3 0 chr15 53150265 53150589 -32545165 + (GAATG)n Satellite Satellite 1 324 0 879 196 0 0 chr15 53150600 53150904 -32544850 + (GAATG)n Satellite Satellite 1 304 0 643 195 3 3 chr15 53150915 53151216 -32544538 + (GAATG)n Satellite Satellite 1 301 0 1122 133 0 2 chr15 53151281 53151732 -32544022 + (GAATG)n Satellite Satellite 1 630 0 861 166 0 0 chr15 53151744 53152165 -32543589 + (GAATG)n Satellite Satellite 1 421 0 396 200 0 0 chr15 53152186 53152286 -32543468 + (GAATG)n Satellite Satellite 4 103 0 1005 166 2 4 chr15 53152325 53153494 -32542260 + (GAATG)n Satellite Satellite 1 1345 0 788 152 0 6 chr15 53153541 53153857 -32541897 + (GAATG)n Satellite Satellite 1 313 0 954 133 3 0 chr15 53153898 53154222 -32541532 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr15 53154308 53154537 -32541217 + (GAATG)n Satellite Satellite 1 229 0 739 184 3 3 chr15 53154557 53154859 -32540895 + (GAATG)n Satellite Satellite 1 302 0 1041 137 0 0 chr15 53154924 53155345 -32540409 + (GAATG)n Satellite Satellite 1 421 0 911 147 0 12 chr15 53155357 53155788 -32539966 + (GAATG)n Satellite Satellite 1 425 0 384 200 0 0 chr15 53155809 53155909 -32539845 + (GAATG)n Satellite Satellite 4 103 0 996 172 1 6 chr15 53155948 53156981 -32538773 + (GAATG)n Satellite Satellite 1 1207 0 752 159 0 6 chr15 53156993 53157349 -32538405 + (GAATG)n Satellite Satellite 1 353 0 879 153 3 3 chr15 53157374 53157731 -32538023 + (GAATG)n Satellite Satellite 1 357 0 357 198 0 0 chr15 53157770 53157876 -32537878 + (GAATG)n Satellite Satellite 4 109 0 789 163 0 0 chr15 53157925 53158103 -32537651 + (GAATG)n Satellite Satellite 2 179 0 891 132 0 0 chr15 53158145 53158319 -32537435 + (GAATG)n Satellite Satellite 1 174 0 654 183 0 0 chr15 53158342 53158511 -32537243 + (GAATG)n Satellite Satellite 4 172 0 492 205 0 0 chr15 53158589 53158745 -32537009 + (GAATG)n Satellite Satellite 4 159 0 945 123 0 0 chr15 53158808 53158987 -32536767 + (GAATG)n Satellite Satellite 2 180 0 891 159 0 0 chr15 53159017 53159293 -32536461 + (GAATG)n Satellite Satellite 1 276 0 667 197 3 3 chr15 53159304 53159610 -32536144 + (GAATG)n Satellite Satellite 1 306 0 402 189 0 0 chr15 53159654 53159760 -32535994 + (GAATG)n Satellite Satellite 4 109 0 1140 112 0 7 chr15 53159778 53160136 -32535618 + (GAATG)n Satellite Satellite 4 530 0 861 168 0 0 chr15 53160158 53160579 -32535175 + (GAATG)n Satellite Satellite 1 421 0 396 200 0 0 chr15 53160600 53160700 -32535054 + (GAATG)n Satellite Satellite 4 103 0 813 150 0 0 chr15 53160872 53161052 -32534702 + (GAATG)n Satellite Satellite 1 180 0 1110 159 0 1 chr15 53161077 53161760 -32533994 + (GAATG)n Satellite Satellite 1 862 0 869 150 0 12 chr15 53161772 53162198 -32533556 + (GAATG)n Satellite Satellite 1 420 0 417 190 0 0 chr15 53162219 53162319 -32533435 + (GAATG)n Satellite Satellite 4 103 0 942 178 0 5 chr15 53162358 53163515 -32532239 + (GAATG)n Satellite Satellite 1 1330 0 680 158 0 10 chr15 53163533 53163748 -32532006 + (GAATG)n Satellite Satellite 1 212 0 999 134 3 0 chr15 53163789 53164113 -32531641 + (GAATG)n Satellite Satellite 1 325 0 858 190 0 0 chr15 53164124 53164418 -32531336 + (GAATG)n Satellite Satellite 1 294 0 739 180 4 4 chr15 53164438 53164725 -32531029 + (GAATG)n Satellite Satellite 1 287 0 663 174 0 0 chr15 53164805 53164983 -32530771 + (GAATG)n Satellite Satellite 1 178 0 1056 115 0 0 chr15 53164998 53165221 -32530533 + (GAATG)n Satellite Satellite 1 223 0 903 158 0 0 chr15 53165233 53165659 -32530095 + (GAATG)n Satellite Satellite 1 426 0 417 190 0 0 chr15 53165680 53165780 -32529974 + (GAATG)n Satellite Satellite 4 103 0 942 172 0 0 chr15 53165819 53166487 -32529267 + (GAATG)n Satellite Satellite 1 668 0 599 187 0 14 chr15 53166537 53166976 -32528778 + (GAATG)n Satellite Satellite 1 432 0 701 153 0 10 chr15 53166994 53167209 -32528545 + (GAATG)n Satellite Satellite 1 212 0 978 134 3 0 chr15 53167250 53167574 -32528180 + (GAATG)n Satellite Satellite 1 325 0 858 190 0 0 chr15 53167585 53167879 -32527875 + (GAATG)n Satellite Satellite 1 294 0 739 184 3 3 chr15 53167899 53168201 -32527553 + (GAATG)n Satellite Satellite 1 302 0 1014 138 0 2 chr15 53168266 53168697 -32527057 + (GAATG)n Satellite Satellite 1 610 0 870 147 2 14 chr15 53168709 53169135 -32526619 + (GAATG)n Satellite Satellite 1 420 0 396 200 0 0 chr15 53169156 53169256 -32526498 + (GAATG)n Satellite Satellite 4 103 0 903 171 2 0 chr15 53169295 53169959 -32525795 + (GAATG)n Satellite Satellite 1 665 0 599 185 0 14 chr15 53170007 53170446 -32525308 + (GAATG)n Satellite Satellite 1 432 0 755 143 0 10 chr15 53170464 53170679 -32525075 + (GAATG)n Satellite Satellite 1 212 0 1011 134 3 0 chr15 53170720 53171044 -32524710 + (GAATG)n Satellite Satellite 1 325 0 858 190 0 0 chr15 53171055 53171349 -32524405 + (GAATG)n Satellite Satellite 1 294 0 708 170 3 20 chr15 53171360 53171656 -32524098 + (GAATG)n Satellite Satellite 1 291 0 1035 154 0 0 chr15 53171719 53172152 -32523602 + (GAATG)n Satellite Satellite 1 433 0 903 162 0 0 chr15 53172164 53172598 -32523156 + (GAATG)n Satellite Satellite 1 434 0 417 190 0 0 chr15 53172611 53172711 -32523043 + (GAATG)n Satellite Satellite 4 103 0 984 175 1 6 chr15 53172750 53173893 -32521861 + (GAATG)n Satellite Satellite 1 1316 0 198 95 0 95 chr15 53173911 53173974 -32521780 - HSATII Satellite Satellite -93 77 21 * 755 160 0 11 chr15 53173966 53174147 -32521607 + (GAATG)n Satellite Satellite 1 179 0 921 139 3 0 chr15 53174167 53174491 -32521263 + (GAATG)n Satellite Satellite 1 324 0 297 0 0 0 chr15 53274512 53274545 -32421209 + (A)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chr15 53274559 53274589 -32421165 + (TA)n Simple_repeat Simple_repeat 1 30 0 824 187 39 0 chr15 53274589 53274744 -32421010 + FRAM SINE Alu 1 155 -21 1050 144 0 0 chr15 53275428 53275588 -32420166 + AluSg/x SINE Alu 138 297 -15 278 289 38 51 chr15 53275935 53276120 -32419634 - MIR SINE MIR -50 212 33 279 0 0 0 chr15 53276728 53276759 -32418995 + (CA)n Simple_repeat Simple_repeat 2 32 0 2060 135 0 7 chr15 53276909 53277212 -32418542 + AluSx SINE Alu 1 301 -11 212 221 0 88 chr15 53277310 53277378 -32418376 + MIR SINE MIR 91 152 -110 270 282 0 14 chr15 53277865 53277936 -32417818 + MIR3 SINE MIR 13 82 -126 1008 217 72 23 chr15 53278077 53278340 -32417414 - L1ME3 LINE L1 -7 6155 5880 339 182 0 0 chr15 53278927 53278982 -32416772 - Alu SINE Alu -11 291 237 356 337 92 5 chr15 53279851 53280035 -32415719 + MIR SINE MIR 29 228 -34 311 311 17 34 chr15 53282072 53282191 -32413563 + MIR SINE MIR 2 118 -144 2513 171 45 0 chr15 53282663 53283132 -32412622 - MLT1D LTR MaLR -15 490 1 2181 128 0 0 chr15 53283196 53283508 -32412246 + AluSx SINE Alu 1 312 0 1155 125 0 0 chr15 53283508 53283676 -32412078 + AluSg/x SINE Alu 123 290 -22 247 135 81 68 chr15 53283704 53283778 -32411976 + LTR33A LTR ERVL 423 497 -26 222 365 108 7 chr15 53283810 53283958 -32411796 + L2 LINE L2 3003 3165 -107 2048 124 3 0 chr15 53284520 53284819 -32410935 + AluSx SINE Alu 1 300 -12 225 272 18 61 chr15 53287484 53287598 -32408156 - MIR SINE MIR -97 165 57 511 172 65 0 chr15 53289626 53289719 -32406035 + MER5B DNA MER1_type 80 178 0 306 337 188 5 chr15 53289721 53289923 -32405831 + L3 LINE CR1 973 1211 -366 917 126 0 15 chr15 53290163 53290298 -32405456 + FLAM_C SINE Alu 1 133 0 232 333 61 10 chr15 53290431 53290530 -32405224 - MIR SINE MIR -66 142 39 358 286 83 0 chr15 53291495 53291628 -32404126 + L2 LINE L2 3170 3313 0 2267 109 0 0 chr15 53293281 53293583 -32402171 - AluSx SINE Alu -10 302 1 505 247 132 13 chr15 53293747 53293919 -32401835 + MLT1J LTR MaLR 70 247 -264 295 280 0 13 chr15 53294023 53294098 -32401656 + MLT1J LTR MaLR 398 471 -40 238 241 138 11 chr15 53294478 53294565 -32401189 + MIR SINE MIR 48 145 -63 319 247 13 0 chr15 53295134 53295211 -32400543 - MIR SINE MIR -120 142 65 449 280 80 0 chr15 53295254 53295404 -32400350 - MIR SINE MIR -16 246 85 319 247 13 0 chr15 53296320 53296397 -32399357 - MIR SINE MIR -120 142 65 616 320 55 0 chr15 53296440 53296659 -32399095 - MIR SINE MIR -16 246 16 314 318 13 19 chr15 53297374 53297528 -32398226 + (CCCA)n Simple_repeat Simple_repeat 2 154 0 201 254 0 30 chr15 53298672 53298739 -32397015 + L2 LINE L2 2866 2930 -342 920 223 4 70 chr15 53298851 53299080 -32396674 + MER58C DNA MER1_type 1 214 -1 305 162 40 40 chr15 53300262 53300336 -32395418 + MIR SINE MIR 69 143 -65 2214 117 0 0 chr15 53300367 53300674 -32395080 - AluSx SINE Alu -5 307 1 287 294 117 35 chr15 53304533 53304730 -32391024 - L2 LINE L2 -2 3311 3099 189 107 0 0 chr15 53304887 53304915 -32390839 + (T)n Simple_repeat Simple_repeat 1 28 0 773 284 139 22 chr15 53304962 53305478 -32390276 - L2 LINE L2 -245 3068 2477 1707 113 43 0 chr15 53305478 53305735 -32390019 + AluSx SINE Alu 30 297 -15 773 284 139 22 chr15 53305735 53305758 -32389996 - L2 LINE L2 -836 2477 2458 186 133 0 0 chr15 53305768 53305798 -32389956 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 378 0 0 0 chr15 53306087 53306129 -32389625 + (TG)n Simple_repeat Simple_repeat 1 42 0 696 235 63 0 chr15 53307869 53308060 -32387694 - MIR SINE MIR -44 218 16 569 306 57 9 chr15 53308938 53309167 -32386587 - MIR SINE MIR 0 262 23 261 256 24 113 chr15 53309218 53309386 -32386368 + MIR3 SINE MIR 35 187 -21 369 0 0 0 chr15 53309824 53309865 -32385889 + (TG)n Simple_repeat Simple_repeat 2 42 0 636 250 103 13 chr15 53310183 53310407 -32385347 - MIR SINE MIR -12 250 7 215 365 10 0 chr15 53310483 53310579 -32385175 - MIR SINE MIR -119 143 47 183 162 0 0 chr15 53310755 53310792 -32384962 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 319 324 34 68 chr15 53310807 53310983 -32384771 - L2 LINE L2 0 3272 3103 1230 216 176 12 chr15 53311040 53311369 -32384385 - MSTD LTR MaLR 0 396 14 603 292 72 63 chr15 53311373 53311801 -32383953 - L2 LINE L2 -350 2964 2533 784 315 119 36 chr15 53311815 53312320 -32383434 - MLT1K LTR MaLR -10 578 32 825 209 25 31 chr15 53313028 53313224 -32382530 + MIR SINE MIR 68 262 0 205 224 61 0 chr15 53313370 53313419 -32382335 + L2 LINE L2 3262 3313 0 * 301 365 262 6 chr15 53313409 53313730 -32382024 + L3 LINE CR1 131 533 -1044 496 204 0 0 chr15 53313964 53314067 -32381687 + L1MB4 LINE L1 6078 6180 0 191 350 68 28 chr15 53314067 53314244 -32381510 + L3 LINE CR1 756 939 -638 552 317 48 0 chr15 53314314 53314522 -32381232 + L3 LINE CR1 1252 1469 -108 184 355 161 8 chr15 53314685 53314933 -32380821 + L2 LINE L2 2258 2543 -771 1058 236 218 13 chr15 53315099 53315489 -32380265 - MLT1J LTR MaLR -4 507 38 876 130 6 85 chr15 53315489 53315666 -32380088 + FRAM SINE Alu 1 162 -14 290 273 121 0 chr15 53315804 53315903 -32379851 - MIR3 SINE MIR -47 161 51 600 287 44 11 chr15 53316284 53316465 -32379289 - MLT1K LTR MaLR -10 578 392 213 275 113 63 chr15 53317321 53317605 -32378149 - L2 LINE L2 -459 2855 2558 2224 104 0 0 chr15 53318203 53318502 -32377252 - AluSg SINE Alu -11 299 1 484 289 178 29 chr15 53319000 53319192 -32376562 + L2 LINE L2 2385 2547 -767 2042 134 0 3 chr15 53319192 53319497 -32376257 - AluSx SINE Alu -8 304 1 484 289 178 29 chr15 53319497 53319681 -32376073 + L2 LINE L2 2547 2817 -497 275 254 0 58 chr15 53320470 53320565 -32375189 + MIR3 SINE MIR 73 162 -46 640 301 40 8 chr15 53320570 53320819 -32374935 + L2 LINE L2 2893 3149 -164 196 156 0 0 chr15 53320929 53320961 -32374793 + MIR SINE MIR 216 247 -15 1137 133 76 5 chr15 53321638 53321848 -32373906 - AluSx SINE Alu -87 225 1 271 393 25 0 chr15 53322153 53322275 -32373479 - L2 LINE L2 -42 3230 3106 220 257 0 57 chr15 53322358 53322428 -32373326 + MIR SINE MIR 67 132 -130 1084 310 119 36 chr15 53322543 53323160 -32372594 - L2 LINE L2 -222 3050 2486 1961 171 77 0 chr15 53323160 53323499 -32372255 - MLT1A1 LTR MaLR 0 365 1 1084 310 119 36 chr15 53323499 53324190 -32371564 - L2 LINE L2 -786 2486 1613 265 210 33 0 chr15 53324341 53324415 -32371339 - MIR SINE MIR -51 157 80 627 333 132 37 chr15 53324838 53325624 -32370130 - L2 LINE L2 -273 2999 2084 2302 88 3 7 chr15 53325624 53325931 -32369823 - AluSc SINE Alu -3 306 1 627 333 132 37 chr15 53325931 53326281 -32369473 - L2 LINE L2 -1188 2084 1769 355 326 205 0 chr15 53326548 53326738 -32369016 - MIR SINE MIR 0 262 34 730 283 17 0 chr15 53327023 53327200 -32368554 - MIR SINE MIR -36 226 47 579 304 59 63 chr15 53327362 53327806 -32367948 - MLT1K LTR MaLR 0 588 147 432 300 20 33 chr15 53328077 53328227 -32367527 - MIR SINE MIR -1 261 114 313 91 0 0 chr15 53328300 53328344 -32367410 - MIR SINE MIR -144 118 75 439 335 179 24 chr15 53328557 53329016 -32366738 - L3 LINE CR1 -265 1312 783 677 150 0 17 chr15 53329057 53329177 -32366577 + L1MB3 LINE L1 5906 6023 -160 260 316 0 13 chr15 53329177 53329253 -32366501 + MIR SINE MIR 187 261 -1 1027 95 18 71 chr15 53329259 53329392 -32366362 + L1MB3 LINE L1 6017 6141 -42 2488 50 0 3 chr15 53329392 53329694 -32366060 + AluY SINE Alu 1 301 -10 1027 95 18 71 chr15 53329694 53329729 -32366025 + L1MB3 LINE L1 6141 6176 -7 353 334 58 36 chr15 53330008 53330367 -32365387 + L2 LINE L2 1712 2078 -1236 305 326 99 42 chr15 53330779 53331113 -32364641 + L2 LINE L2 2919 3271 -1 181 254 0 36 chr15 53331143 53331198 -32364556 + L2 LINE L2 3204 3256 -16 22 0 0 0 chr15 53331546 53331568 -32364186 + GC_rich Low_complexity Low_complexity 1 22 0 349 221 16 31 chr15 53331651 53331778 -32363976 + (CGGGG)n Simple_repeat Simple_repeat 3 127 0 27 0 0 0 chr15 53331905 53331932 -32363822 + GC_rich Low_complexity Low_complexity 1 27 0 218 185 31 0 chr15 53331936 53332001 -32363753 + C-rich Low_complexity Low_complexity 3 69 0 21 95 0 0 chr15 53332002 53332065 -32363689 + GC_rich Low_complexity Low_complexity 1 63 0 1910 102 58 0 chr15 53335642 53335936 -32359818 + AluSq SINE Alu 1 311 -2 1738 181 125 3 chr15 53336162 53336515 -32359239 - MSTD LTR MaLR 0 396 1 209 114 68 0 chr15 53337243 53337287 -32358467 + (ATGGTG)n Simple_repeat Simple_repeat 4 50 0 827 145 0 8 chr15 53338012 53338143 -32357611 - FLAM_C SINE Alu -12 131 2 404 257 170 36 chr15 53338483 53338841 -32356913 - L1ME4a LINE L1 -188 5933 5528 277 250 0 23 chr15 53339240 53339372 -32356382 + (ATGGTG)n Simple_repeat Simple_repeat 6 134 0 390 313 25 6 chr15 53339388 53339551 -32356203 + (TGG)n Simple_repeat Simple_repeat 2 167 0 1903 142 3 0 chr15 53341386 53341682 -32354072 + AluSx SINE Alu 1 297 -15 452 107 27 0 chr15 53341966 53342041 -32353713 + CT-rich Low_complexity Low_complexity 1 77 0 531 315 30 55 chr15 53342927 53343422 -32352332 - L1ME4a LINE L1 -1831 4315 3833 200 267 187 13 chr15 53343647 53343722 -32352032 + L2 LINE L2 2686 2773 -541 1402 166 4 13 chr15 53344672 53344907 -32350847 + MER46A DNA MER2_type 4 236 0 902 242 48 26 chr15 53345066 53345293 -32350461 + MIR SINE MIR 28 259 -3 649 191 43 90 chr15 53345559 53345747 -32350007 - MIR SINE MIR -28 234 56 201 234 0 21 chr15 53346136 53346183 -32349571 + CT-rich Low_complexity Low_complexity 3 48 0 217 220 0 17 chr15 53348056 53348115 -32347639 + G-rich Low_complexity Low_complexity 4 61 0 2171 87 0 7 chr15 53348146 53348468 -32347286 + AluSp SINE Alu 1 320 0 205 354 55 24 chr15 53348549 53348676 -32347078 - L2 LINE L2 -5 3267 3137 263 336 143 0 chr15 53348886 53349005 -32346749 + MIR SINE MIR 56 191 -71 288 219 110 37 chr15 53349075 53349157 -32346597 + MIR3 SINE MIR 109 196 -12 190 233 23 0 chr15 53349151 53349194 -32346560 + MIR SINE MIR 110 153 -109 * 1589 122 62 49 chr15 53349267 53349571 -32346183 + AluJb SINE Alu 5 312 0 626 245 25 6 chr15 53349953 53350112 -32345642 - MIR SINE MIR -81 181 20 231 317 25 87 chr15 53350200 53350361 -32345393 + L1ME4a LINE L1 5870 6020 -101 1685 139 80 0 chr15 53350654 53351090 -32344664 + AluSx SINE Alu 1 458 0 305 289 48 19 chr15 53351188 53351292 -32344462 + MIR SINE MIR 86 192 -70 370 269 20 81 chr15 53351449 53351598 -32344156 - MIR SINE MIR -3 259 120 731 253 5 11 chr15 53351598 53351788 -32343966 - L1ME4a LINE L1 -2484 3662 3474 204 288 38 106 chr15 53352381 53352541 -32343213 - L2 LINE L2 -161 3111 2963 675 276 86 40 chr15 53352875 53353220 -32342534 - MLT1L LTR MaLR -69 467 110 220 175 0 0 chr15 53354001 53354041 -32341713 + MIR SINE MIR 82 121 -87 201 295 114 19 chr15 53354269 53354374 -32341380 + L3 LINE CR1 595 709 -868 1504 162 66 33 chr15 53354383 53354685 -32341069 + AluJb SINE Alu 1 312 0 371 288 6 59 chr15 53356055 53356225 -32339529 + MIR SINE MIR 93 253 -9 1897 93 20 26 chr15 53356264 53356566 -32339188 + THE1C LTR MaLR 30 329 -46 288 159 0 0 chr15 53356637 53356681 -32339073 + THE1C LTR MaLR 332 375 0 4161 42 17 0 chr15 53358040 53358522 -32337232 - LTR2B LTR ERV1 0 490 1 631 301 88 6 chr15 53358638 53358879 -32336875 + MIR SINE MIR 5 262 0 210 324 93 9 chr15 53359694 53359805 -32335949 - MIR3 SINE MIR -36 172 47 753 320 69 10 chr15 53360144 53360447 -32335307 + L2 LINE L2 2952 3272 0 366 275 50 8 chr15 53360701 53360821 -32334933 + LTR16C LTR ERVL 147 271 -220 181 205 26 0 chr15 53361401 53361440 -32334314 - L2 LINE L2 -23 3249 3210 423 248 56 5 chr15 53361458 53361596 -32334158 - MIR SINE MIR -46 216 75 407 310 117 19 chr15 53362765 53362897 -32332857 + MIR SINE MIR 17 179 -83 2270 181 2 22 chr15 53362897 53363301 -32332453 - MSTD LTR MaLR 0 396 1 407 310 117 19 chr15 53363301 53363381 -32332373 + MIR SINE MIR 179 250 -12 187 309 154 9 chr15 53363999 53364109 -32331645 + L3b LINE CR1 1293 1418 -165 502 239 17 0 chr15 53364247 53364364 -32331390 + MIR SINE MIR 26 144 -118 361 227 35 86 chr15 53364432 53364488 -32331266 - Charlie7 DNA MER1_type -1 2611 2554 2337 74 0 3 chr15 53364488 53364785 -32330969 + AluSc SINE Alu 1 296 -13 361 227 35 86 chr15 53364785 53364926 -32330828 - Charlie7 DNA MER1_type -58 2554 2424 * 386 245 9 28 chr15 53364903 53365009 -32330745 - Charlie7 DNA MER1_type -2507 105 2 2076 110 0 74 chr15 53365416 53365753 -32330001 - AluSx SINE Alu 0 312 1 1126 280 57 11 chr15 53365819 53366312 -32329442 + L2 LINE L2 2787 3310 -3 1198 249 39 70 chr15 53367211 53367725 -32328029 + MLT1J LTR MaLR 8 505 -6 237 188 42 0 chr15 53369642 53369690 -32326064 + MER81 DNA DNA 65 114 0 207 337 31 20 chr15 53369927 53370025 -32325729 + MIR SINE MIR 38 136 -72 234 250 39 19 chr15 53370406 53370510 -32325244 + (CTGGGG)n Simple_repeat Simple_repeat 1 106 0 258 116 0 0 chr15 53370599 53370642 -32325112 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 277 277 32 11 chr15 53370642 53370736 -32325018 - L2 LINE L2 0 3313 3218 713 306 31 5 chr15 53371377 53371599 -32324155 - MIR SINE MIR -17 245 18 238 269 85 46 chr15 53373004 53373134 -32322620 - L3 LINE CR1 -16 1561 1427 214 365 66 15 chr15 53373769 53373906 -32321848 - L2 LINE L2 -5 3308 3165 454 285 95 13 chr15 53373950 53374108 -32321646 - MIR SINE MIR -65 197 27 413 307 156 7 chr15 53374305 53374575 -32321179 - LTR16C LTR ERVL -2 489 180 370 259 54 54 chr15 53375949 53376096 -32319658 + MIR SINE MIR 40 186 -76 274 236 153 35 chr15 53376111 53376255 -32319499 + L2 LINE L2 3095 3255 -58 186 357 51 10 chr15 53376430 53376528 -32319226 + L2 LINE L2 3136 3237 -35 278 289 38 51 chr15 53376990 53377175 -32318579 - MIR SINE MIR -50 212 33 444 37 0 0 chr15 53377781 53377835 -32317919 + (CA)n Simple_repeat Simple_repeat 2 55 0 194 216 0 0 chr15 53378369 53378406 -32317348 + MIR SINE MIR 223 259 -3 321 273 36 0 chr15 53378506 53378616 -32317138 + (CCCA)n Simple_repeat Simple_repeat 3 116 0 1631 172 20 3 chr15 53379235 53379532 -32316222 + MER58B DNA MER1_type 39 340 -1 238 300 9 27 chr15 53379850 53379960 -32315794 + GA-rich Low_complexity Low_complexity 1 108 0 252 254 184 45 chr15 53380819 53381020 -32314734 + MIR SINE MIR 3 231 -31 2025 115 18 0 chr15 53381044 53381330 -32314424 + AluSx SINE Alu 4 294 -18 183 224 129 47 chr15 53381335 53381420 -32314334 - L2 LINE L2 -48 3265 3174 336 102 0 0 chr15 53382161 53382210 -32313544 + (CA)n Simple_repeat Simple_repeat 1 49 0 667 234 239 10 chr15 53383450 53383659 -32312095 - MIR SINE MIR -3 259 3 2023 93 58 0 chr15 53383753 53384031 -32311723 + AluSq SINE Alu 2 295 -18 332 315 113 55 chr15 53384259 53384659 -32311095 + MLT1K LTR MaLR 158 580 -8 187 355 110 13 chr15 53384778 53384933 -32310821 - L2 LINE L2 -24 3248 3079 359 246 8 42 chr15 53386598 53386716 -32309038 + MIR SINE MIR 30 143 -65 1736 228 79 29 chr15 53386837 53387316 -32308438 - MLT1D LTR MaLR -2 503 1 366 319 14 36 chr15 53388008 53388146 -32307608 + MIR SINE MIR 16 150 -112 438 282 110 37 chr15 53388399 53388676 -32307078 + L2 LINE L2 2765 3064 -208 760 181 16 0 chr15 53392219 53392346 -32303408 - FLAM_C SINE Alu -3 130 2 956 161 12 6 chr15 53392764 53392932 -32302822 + AluJb SINE Alu 1 169 -143 2194 97 0 19 chr15 53393073 53393383 -32302371 + AluY SINE Alu 1 304 -7 427 338 106 25 chr15 53393383 53393741 -32302013 - L2 LINE L2 -378 2936 2550 288 194 15 15 chr15 53394894 53394961 -32300793 - MLT1L LTR MaLR -54 561 495 420 237 43 0 chr15 53395074 53395167 -32300587 - MLT1L LTR MaLR -360 255 159 29 28 0 0 chr15 53396053 53396089 -32299665 + AT_rich Low_complexity Low_complexity 1 36 0 2138 135 100 3 chr15 53396089 53396468 -32299286 - MSTA LTR MaLR -12 416 1 1264 184 28 0 chr15 53396556 53396774 -32298980 + MER58A DNA MER1_type 1 224 0 11210 139 24 13 chr15 53396892 53398249 -32297505 + Ricksha_c DNA DNA 137 1478 -1784 2422 70 0 0 chr15 53398249 53398551 -32297203 + AluY SINE Alu 1 302 -9 11210 139 24 13 chr15 53398551 53399126 -32296628 + Ricksha_c DNA DNA 1478 2045 -9 250 267 0 0 chr15 53399414 53399474 -32296280 - MLT1K LTR MaLR -7 581 522 633 251 106 5 chr15 53399625 53399832 -32295922 - MLT1K LTR MaLR -283 305 78 243 362 75 48 chr15 53400078 53400412 -32295342 + L2 LINE L2 2836 3178 -94 312 341 57 0 chr15 53400575 53400698 -32295056 - L2 LINE L2 0 3272 3143 200 385 0 0 chr15 53400739 53400804 -32294950 + L2 LINE L2 3249 3313 0 207 261 148 0 chr15 53401295 53401383 -32294371 - L2 LINE L2 -149 3123 3023 2300 78 7 0 chr15 53401443 53401738 -32294016 - AluSc SINE Alu -12 297 1 400 229 110 0 chr15 53402057 53402166 -32293588 - L2 LINE L2 -5 3308 3188 322 149 14 14 chr15 53402872 53402946 -32292808 + (TG)n Simple_repeat Simple_repeat 2 75 0 1832 116 11 4 chr15 53403007 53403274 -32292480 + AluSx SINE Alu 1 269 -43 225 65 0 0 chr15 53403296 53403327 -32292427 + (CAA)n Simple_repeat Simple_repeat 2 32 0 457 200 32 11 chr15 53403559 53403654 -32292100 - MER5A DNA MER1_type -77 112 16 1955 106 0 34 chr15 53403683 53404002 -32291752 + AluSx SINE Alu 1 309 0 180 273 197 8 chr15 53404561 53404693 -32291061 - L2 LINE L2 -291 2981 2825 617 300 79 42 chr15 53405025 53405329 -32290425 - L2 LINE L2 -862 2452 2128 2302 88 3 7 chr15 53405329 53405636 -32290118 - AluSc SINE Alu -3 306 1 617 300 79 42 chr15 53405636 53405734 -32290020 - L2 LINE L2 -1186 2128 2035 2111 67 0 54 chr15 53406333 53406631 -32289123 - AluY SINE Alu -29 282 1 721 283 28 12 chr15 53407011 53407258 -32288496 + MIR SINE MIR 2 252 -10 331 306 12 77 chr15 53407297 53407467 -32288287 - L1M4 LINE L1 -2954 3192 3034 793 266 35 71 chr15 53407467 53407861 -32287893 + L1M4 LINE L1 3466 3845 -2301 592 299 6 0 chr15 53409000 53409164 -32286590 - MIR3 SINE MIR -22 186 22 202 333 13 0 chr15 53410201 53410276 -32285478 + MIR SINE MIR 110 185 -77 837 227 22 66 chr15 53410643 53410916 -32284838 + MIR SINE MIR 2 262 0 817 277 23 4 chr15 53411114 53411408 -32284346 - L2 LINE L2 -257 3056 2758 969 51 0 0 chr15 53412543 53412689 -32283065 - AluY SINE Alu 0 312 167 371 264 112 16 chr15 53412715 53412840 -32282914 - L2 LINE L2 -2 3270 3134 245 337 0 40 chr15 53413504 53413605 -32282149 + MIR3 SINE MIR 111 207 -1 216 175 0 25 chr15 53413616 53413656 -32282098 + CT-rich Low_complexity Low_complexity 4 42 0 863 231 80 0 chr15 53414269 53414481 -32281273 - MIR SINE MIR -32 230 2 2326 75 0 37 chr15 53414524 53414845 -32280909 - AluSc SINE Alu 0 309 1 342 300 49 28 chr15 53414853 53414997 -32280757 - MIR SINE MIR -62 146 43 455 224 35 9 chr15 53415423 53415539 -32280215 + MER5A DNA MER1_type 2 120 -69 359 257 63 43 chr15 53416043 53416185 -32279569 - MIR3 SINE MIR -69 139 10 409 265 17 26 chr15 53416275 53416392 -32279362 - MIR3 SINE MIR -5 203 88 209 148 74 37 chr15 53416519 53416573 -32279181 + L2 LINE L2 3215 3270 -2 206 224 0 0 chr15 53418181 53418230 -32277524 + GA-rich Low_complexity Low_complexity 2 50 0 285 51 0 0 chr15 53418505 53418544 -32277210 + (TA)n Simple_repeat Simple_repeat 2 40 0 383 238 10 158 chr15 53419543 53419670 -32276084 - MIR SINE MIR -11 251 163 2196 111 3 0 chr15 53419670 53419977 -32275777 - AluSx SINE Alu 0 312 5 383 238 10 158 chr15 53419977 53420051 -32275703 - MIR SINE MIR -99 163 80 424 283 20 13 chr15 53420094 53420246 -32275508 + MIR SINE MIR 60 212 -50 189 125 0 0 chr15 53421173 53421205 -32274549 - MIR SINE MIR -65 143 112 1802 136 7 20 chr15 53421450 53421768 -32273986 - AluSc SINE Alu 0 309 1 2026 121 3 7 chr15 53421770 53422075 -32273679 - AluSx SINE Alu -8 304 1 236 278 67 0 chr15 53422112 53422202 -32273552 + L3 LINE CR1 1359 1454 -123 701 280 43 24 chr15 53422449 53422660 -32273094 - MIR SINE MIR -3 259 45 229 247 12 59 chr15 53422845 53422930 -32272824 + L2 LINE L2 3191 3271 -1 210 260 0 65 chr15 53422959 53423036 -32272718 - L2 LINE L2 0 3272 3201 210 196 0 20 chr15 53423678 53423729 -32272025 + L2 LINE L2 3264 3313 0 215 284 57 57 chr15 53423737 53423825 -32271929 - MIR SINE MIR -115 147 60 2233 98 0 3 chr15 53424171 53424476 -32271278 + AluSc SINE Alu 1 304 -5 4342 134 74 46 chr15 53425678 53427019 -32268735 + pTR5 LTR ERV1 745 2438 0 183 156 0 0 chr15 53427039 53427071 -32268683 + G-rich Low_complexity Low_complexity 2 33 0 597 249 136 14 chr15 53427906 53428119 -32267635 + MER102b DNA MER1_type 103 341 0 203 175 0 48 chr15 53428533 53428596 -32267158 + T-rich Low_complexity Low_complexity 2 61 0 242 274 94 28 chr15 53429054 53429160 -32266594 - L3b LINE CR1 -167 1416 1304 1264 160 5 14 chr15 53429992 53430211 -32265543 + AluJb SINE Alu 86 302 -10 267 235 0 0 chr15 53431243 53431294 -32264460 - MLT1J LTR MaLR -51 460 410 383 303 62 20 chr15 53431667 53431911 -32263843 - L1ME4a LINE L1 -234 5887 5634 477 291 67 24 chr15 53433251 53433416 -32262338 + MIR SINE MIR 48 219 -43 678 228 80 30 chr15 53433919 53434337 -32261417 - MLT1C LTR MaLR 0 467 8 258 256 23 35 chr15 53434398 53434484 -32261270 - MIR SINE MIR -88 174 90 308 24 0 24 chr15 53436399 53436441 -32259313 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 291 0 17 chr15 53436459 53436576 -32259178 + (CA)n Simple_repeat Simple_repeat 2 116 0 27 81 0 0 chr15 53437490 53437552 -32258202 + AT_rich Low_complexity Low_complexity 1 62 0 260 320 105 6 chr15 53437639 53437811 -32257943 - MER5A DNA MER1_type 0 189 1 708 249 64 10 chr15 53438967 53439167 -32256587 + MLT1J LTR MaLR 3 179 -271 914 225 0 5 chr15 53439263 53439450 -32256304 - MER5A DNA MER1_type 0 189 4 237 174 101 43 chr15 53439641 53439710 -32256044 - MIR3 SINE MIR -46 162 90 1341 228 78 53 chr15 53439805 53440292 -32255462 + MLT1D LTR MaLR 1 499 -6 2504 129 5 18 chr15 53440510 53440890 -32254864 + THE1C LTR MaLR 1 375 0 439 258 49 22 chr15 53443036 53443187 -32252567 - MIR SINE MIR -63 145 44 218 292 117 25 chr15 53443213 53443333 -32252421 + MIR SINE MIR 113 243 -19 260 312 95 65 chr15 53443507 53443738 -32252016 - L2 LINE L2 -23 3249 3012 658 227 51 89 chr15 53443810 53444123 -32251631 - L1MD2 LINE L1 -16 6343 6043 1980 155 10 3 chr15 53444132 53444429 -32251325 - AluJb SINE Alu -8 304 6 1460 251 79 5 chr15 53445617 53446020 -32249734 + LTR16A LTR ERVL 18 450 0 383 328 105 35 chr15 53446227 53446456 -32249298 + MIR SINE MIR 7 251 -11 2803 174 83 3 chr15 53448693 53449281 -32246473 + MER73 LTR ERVL 10 644 0 320 273 192 16 chr15 53449661 53449840 -32245914 - MIR SINE MIR -35 227 14 401 284 67 98 chr15 53450910 53451340 -32244414 + L2 LINE L2 2804 3220 -52 324 70 0 0 chr15 53451395 53451438 -32244316 + (CA)n Simple_repeat Simple_repeat 2 44 0 390 243 30 47 chr15 53451622 53451791 -32243963 + MLT1H LTR MaLR 3 168 -381 570 226 65 7 chr15 53451882 53452037 -32243717 + MLT1H LTR MaLR 382 545 -4 256 279 164 18 chr15 53452111 53452276 -32243478 + L2 LINE L2 2834 3022 -250 290 289 123 0 chr15 53452637 53452751 -32243003 + MIR SINE MIR 21 148 -60 800 225 144 73 chr15 53453552 53453948 -32241806 + LTR16A1 LTR ERVL 25 448 -9 909 278 18 4 chr15 53453987 53454214 -32241540 - MIR SINE MIR -25 237 8 2018 120 3 37 chr15 53454391 53454690 -32241064 - AluSx SINE Alu -23 289 1 293 305 58 58 chr15 53454754 53454944 -32240810 + MIR3 SINE MIR 16 205 -3 216 245 20 0 chr15 53455144 53455193 -32240561 - L2 LINE L2 0 3313 3264 183 300 156 51 chr15 53456223 53456460 -32239294 + L2 LINE L2 2715 2976 -338 1005 234 5 0 chr15 53456710 53456898 -32238856 - MER5A DNA MER1_type 0 189 1 1997 132 10 3 chr15 53457026 53457322 -32238432 - AluSx SINE Alu -12 300 3 650 181 69 9 chr15 53457908 53458024 -32237730 + FLAM_C SINE Alu 2 124 -19 21 0 0 0 chr15 53458084 53458105 -32237649 + AT_rich Low_complexity Low_complexity 1 21 0 681 166 14 7 chr15 53458136 53458275 -32237479 + MER53 DNA DNA 43 182 -7 524 206 93 6 chr15 53458418 53458572 -32237182 - MER5A DNA MER1_type 0 178 10 222 340 59 38 chr15 53458579 53458817 -32236937 - L2 LINE L2 -159 3113 2871 290 266 23 126 chr15 53458833 53459047 -32236707 - L2 LINE L2 -43 3229 3038 570 250 51 13 chr15 53459532 53459688 -32236066 + MLT1J LTR MaLR 9 170 -341 296 219 12 24 chr15 53459706 53459788 -32235966 - LTR33A LTR ERVL -3 520 440 225 324 51 107 chr15 53460963 53461336 -32234418 - L2 LINE L2 -6 3266 2915 209 200 0 55 chr15 53462755 53462810 -32232944 + CT-rich Low_complexity Low_complexity 3 54 0 1062 249 0 50 chr15 53463048 53463391 -32232363 + AluYa5 SINE Alu 1 327 0 411 145 0 0 chr15 53464245 53464314 -32231440 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2277 110 7 7 chr15 53464314 53464624 -32231130 - AluSx SINE Alu 0 312 3 750 294 34 38 chr15 53464736 53464771 -32230983 + MIR SINE MIR 2 36 -226 766 194 48 32 chr15 53464771 53464957 -32230797 - MER5A DNA MER1_type 0 189 1 750 294 34 38 chr15 53464957 53465183 -32230571 + MIR SINE MIR 36 262 0 288 188 0 0 chr15 53466135 53466204 -32229550 + A-rich Low_complexity Low_complexity 1 69 0 188 158 105 0 chr15 53466793 53466831 -32228923 + L2 LINE L2 3267 3308 -5 254 347 0 0 chr15 53468157 53468232 -32227522 + MIR SINE MIR 20 94 -168 234 256 44 33 chr15 53468684 53468774 -32226980 + MER70B LTR ERVL 459 549 -29 263 257 14 14 chr15 53470030 53470100 -32225654 - MIR SINE MIR -130 132 63 541 330 88 34 chr15 53471027 53471266 -32224488 + MIR SINE MIR 8 259 -3 187 149 95 68 chr15 53472395 53472469 -32223285 + MER5A DNA MER1_type 6 81 -108 444 312 24 0 chr15 53473098 53473223 -32222531 - MIR SINE MIR -62 146 19 467 176 24 0 chr15 53473869 53473954 -32221800 - MIR SINE MIR -100 162 76 185 259 167 0 chr15 53474375 53474429 -32221325 + MIR SINE MIR 5 67 -195 2602 202 46 143 chr15 53474442 53476973 -32218781 - L1MDa LINE L1 -3245 3295 1007 405 271 77 52 chr15 53477409 53477734 -32218020 - L1MDa LINE L1 -6191 349 17 2329 124 0 10 chr15 53477820 53478166 -32217588 - AluSq SINE Alu 0 345 3 184 298 29 58 chr15 53479161 53479265 -32216489 - MIR SINE MIR -77 131 31 342 0 0 0 chr15 53479944 53479982 -32215772 + (TG)n Simple_repeat Simple_repeat 1 38 0 1612 81 10 5 chr15 53581636 53581834 -32113920 - AluSx SINE Alu -113 199 1 457 291 37 8 chr15 53582057 53582191 -32113563 + MIR SINE MIR 34 171 -91 542 228 0 17 chr15 53582257 53582437 -32113317 + (ATGGTG)n Simple_repeat Simple_repeat 2 178 0 2295 109 0 0 chr15 53582606 53582899 -32112855 + AluSx SINE Alu 1 293 -19 538 196 0 0 chr15 53583255 53583357 -32112397 - AluSq/x SINE Alu -209 104 3 438 239 0 26 chr15 53583415 53583528 -32112226 - MSTC LTR MaLR -318 110 1 730 203 8 0 chr15 53584066 53584199 -32111555 - FRAM SINE Alu -8 168 35 286 309 65 22 chr15 53584200 53584339 -32111415 - MIR SINE MIR -98 164 20 2049 108 18 4 chr15 53584415 53584732 -32111022 + AluSg SINE Alu 1 321 0 340 313 30 15 chr15 53585191 53585322 -32110432 - L2 LINE L2 -1 3312 3180 1030 164 7 0 chr15 53585347 53585499 -32110255 + AluJo SINE Alu 1 153 -159 189 121 0 0 chr15 53586080 53586113 -32109641 + (T)n Simple_repeat Simple_repeat 1 33 0 276 100 0 0 chr15 53586415 53586455 -32109299 + (T)n Simple_repeat Simple_repeat 1 40 0 27 62 0 0 chr15 53587508 53587556 -32108198 + AT_rich Low_complexity Low_complexity 1 48 0 250 373 20 20 chr15 53587608 53587710 -32108044 - L3 LINE CR1 -45 1532 1431 450 0 0 0 chr15 53588009 53588059 -32107695 + (TG)n Simple_repeat Simple_repeat 2 51 0 610 321 36 8 chr15 53589716 53589968 -32105786 - MIR SINE MIR 0 262 4 1407 129 0 62 chr15 53590169 53590461 -32105293 + AluSg/x SINE Alu 85 361 0 2041 215 71 40 chr15 53590474 53591096 -32104658 + L1ME3 LINE L1 5516 6156 -6 216 67 0 0 chr15 53591096 53591126 -32104628 + (TG)n Simple_repeat Simple_repeat 1 30 0 2190 107 0 0 chr15 53591126 53591406 -32104348 - AluSq SINE Alu -33 280 1 777 181 47 26 chr15 53591488 53591681 -32104073 - MER3 DNA MER1_type -2 207 11 241 208 19 0 chr15 53592721 53592774 -32102980 + MIR SINE MIR 79 132 -76 306 259 52 43 chr15 53592829 53592945 -32102809 - MER91C DNA MER1_type 0 140 24 1042 93 6 43 chr15 53593028 53593190 -32102564 - MER5A DNA MER1_type -32 157 2 1521 198 8 0 chr15 53593199 53593467 -32102287 - AluJb SINE Alu -5 307 38 2000 182 42 5 chr15 53593517 53593945 -32101809 + L1ME4a LINE L1 5377 5820 -422 2371 109 0 0 chr15 53593946 53594250 -32101504 + AluSq SINE Alu 1 304 -9 865 205 15 20 chr15 53594318 53594513 -32101241 + MLT1A1 LTR MaLR 172 365 0 183 359 117 0 chr15 53594539 53594667 -32101087 + L3 LINE CR1 1392 1534 -43 2170 89 0 23 chr15 53594840 53595142 -32100612 - AluY SINE Alu -16 295 1 1964 257 30 41 chr15 53595165 53595989 -32099765 + L1M4 LINE L1 4444 5282 -864 1949 131 47 3 chr15 53595989 53596287 -32099467 + AluSq SINE Alu 1 311 -2 293 85 0 0 chr15 53596291 53596338 -32099416 + L1M LINE L1 5254 5300 -942 777 187 9 91 chr15 53596338 53596557 -32099197 + MLT1D LTR MaLR 44 244 -261 1476 232 103 10 chr15 53596574 53597293 -32098461 + L1ME3A LINE L1 4835 5609 -561 7962 103 42 14 chr15 53597297 53598158 -32097596 - HSMAR2 DNA Mariner -6 1296 387 1934 156 0 16 chr15 53598158 53598465 -32097289 + AluJb SINE Alu 7 308 -4 7962 103 42 14 chr15 53598465 53598862 -32096892 - HSMAR2 DNA Mariner -915 387 3 643 204 72 6 chr15 53598866 53599033 -32096721 + L1ME3A LINE L1 5922 6099 -71 975 294 31 13 chr15 53599069 53599677 -32096077 + L1M4 LINE L1 2438 3056 -3090 2193 108 7 7 chr15 53600334 53600631 -32095123 + AluSp SINE Alu 1 297 -16 301 294 109 8 chr15 53600783 53600902 -32094852 + L1ME4a LINE L1 5963 6093 -28 668 149 0 18 chr15 53601138 53601326 -32094428 - FLAM_C SINE Alu 0 191 6 1831 287 83 75 chr15 53601348 53601534 -32094220 - L1MEc LINE L1 -2787 3428 3245 2030 138 3 13 chr15 53601534 53601832 -32093922 - AluSx SINE Alu -13 299 5 1831 287 83 75 chr15 53601832 53602065 -32093689 - L1MEc LINE L1 -2970 3245 3015 673 109 87 7 chr15 53602065 53602203 -32093551 + L1MB3 LINE L1 6032 6180 -3 1831 287 83 75 chr15 53602203 53602322 -32093432 - L1MEc LINE L1 -3200 3015 2898 187 53 26 26 chr15 53602322 53602360 -32093394 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2236 97 0 0 chr15 53602361 53602639 -32093115 - AluSg SINE Alu -32 278 1 1831 287 83 75 chr15 53602639 53603079 -32092675 - L1MEc LINE L1 -3317 2898 2434 2031 165 0 10 chr15 53603079 53603388 -32092366 - AluJb SINE Alu -6 306 1 1831 287 83 75 chr15 53603388 53603486 -32092268 - L1MEc LINE L1 -3781 2434 2338 1687 228 120 35 chr15 53603488 53604194 -32091560 - HAL1 LINE L1 -45 2462 1697 487 235 137 6 chr15 53604242 53604425 -32091329 - MER69B DNA AcHobo -69 1157 951 2061 190 37 34 chr15 53604434 53604490 -32091264 - MLT2F LTR ERVL 0 663 609 348 24 0 0 chr15 53604490 53604531 -32091223 + (TC)n Simple_repeat Simple_repeat 2 42 0 2061 190 37 34 chr15 53604531 53604976 -32090778 - MLT2F LTR ERVL -54 609 96 2236 129 3 0 chr15 53604976 53605287 -32090467 + AluSx SINE Alu 1 312 0 2061 190 37 34 chr15 53605287 53605380 -32090374 - MLT2F LTR ERVL -567 96 5 1350 207 83 130 chr15 53605383 53605884 -32089870 - MER69B DNA AcHobo -1582 944 476 2029 157 0 3 chr15 53605884 53606183 -32089571 - AluJb SINE Alu -9 303 6 1350 207 83 130 chr15 53606183 53606304 -32089450 - MER69B DNA AcHobo -2050 476 351 443 270 124 38 chr15 53606300 53606550 -32089204 + MLT1H1 LTR MaLR 290 552 -3 * 340 306 104 16 chr15 53606582 53606765 -32088989 - L1MEc LINE L1 -4086 2310 2112 1279 232 44 39 chr15 53607116 53607526 -32088228 + MER92A LTR ERV1 1 412 0 204 40 0 0 chr15 53607667 53607692 -32088062 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 226 226 0 0 chr15 53608658 53608711 -32087043 + L1MC/D LINE L1 5709 5761 -2047 272 27 27 0 chr15 53609418 53609455 -32086299 + (CAAT)n Simple_repeat Simple_repeat 4 41 0 3173 80 15 9 chr15 53611287 53611750 -32084004 - L1PA11 LINE L1 0 6174 5709 23 33 0 0 chr15 53611777 53611807 -32083947 + AT_rich Low_complexity Low_complexity 1 30 0 2195 123 3 22 chr15 53612206 53612524 -32083230 - AluSx SINE Alu 0 312 1 1397 203 91 47 chr15 53612526 53612630 -32083124 - L1ME1 LINE L1 -297 5869 5771 207 0 0 0 chr15 53612630 53612653 -32083101 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1397 203 91 47 chr15 53612653 53612976 -32082778 - L1ME1 LINE L1 -395 5771 5423 2159 125 0 0 chr15 53613395 53613684 -32082070 - AluY SINE Alu -22 289 1 1591 135 29 50 chr15 53613692 53613944 -32081810 - L1MA5 LINE L1 -2 6298 6053 1694 181 46 0 chr15 53613944 53614225 -32081529 - AluJo SINE Alu -18 294 1 1591 135 29 50 chr15 53614225 53614313 -32081441 - L1MA5 LINE L1 -247 6053 5965 709 127 51 38 chr15 53614313 53614468 -32081286 + L1MA7 LINE L1 6123 6282 -9 425 239 0 0 chr15 53614564 53614656 -32081098 - MIR SINE MIR -67 141 50 1745 120 0 4 chr15 53615028 53615269 -32080485 + AluSx SINE Alu 63 302 -10 482 258 188 5 chr15 53615379 53615565 -32080189 + MIR SINE MIR 17 236 -26 256 173 18 55 chr15 53615661 53615771 -32079983 + CT-rich Low_complexity Low_complexity 3 108 0 198 221 59 0 chr15 53616313 53616381 -32079373 - MIR SINE MIR -71 137 66 207 290 97 11 chr15 53616918 53617011 -32078743 + MIR3 SINE MIR 108 208 0 575 305 62 20 chr15 53617056 53617401 -32078353 + LTR16A1 LTR ERVL 107 445 -12 256 329 66 24 chr15 53618155 53618322 -32077432 - MIR3 SINE MIR -31 177 4 489 232 36 7 chr15 53618591 53618729 -32077025 + FLAM_A SINE Alu 1 142 0 2170 138 0 3 chr15 53619204 53619509 -32076245 + AluSq SINE Alu 1 304 -9 348 221 115 18 chr15 53619598 53619711 -32076043 + MLT1L LTR MaLR 422 545 -70 1829 182 6 13 chr15 53619955 53620268 -32075486 - AluJb SINE Alu -1 311 1 513 268 76 43 chr15 53620975 53621076 -32074678 - MIR SINE MIR -4 258 162 2448 63 27 10 chr15 53621076 53621376 -32074378 - AluSg SINE Alu -5 305 1 513 268 76 43 chr15 53621376 53621488 -32074266 - MIR SINE MIR -100 162 39 525 16 0 0 chr15 53621625 53621687 -32074067 + (TG)n Simple_repeat Simple_repeat 1 62 0 21 57 0 0 chr15 53624930 53624965 -32070789 + GC_rich Low_complexity Low_complexity 1 35 0 229 245 0 0 chr15 53628291 53628344 -32067410 + G-rich Low_complexity Low_complexity 3 55 0 21 82 0 0 chr15 53628949 53628998 -32066756 + GC_rich Low_complexity Low_complexity 1 49 0 2305 67 7 10 chr15 53630134 53630472 -32065282 - AluSc SINE Alu 0 309 1 255 219 14 0 chr15 53631221 53631294 -32064460 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 222 293 0 79 chr15 53632355 53632495 -32063259 + CT-rich Low_complexity Low_complexity 2 130 0 599 164 17 35 chr15 53632784 53632900 -32062854 - MER81 DNA DNA 0 114 1 218 274 53 32 chr15 53633664 53633759 -32061995 + MIR3 SINE MIR 91 187 -21 221 311 98 38 chr15 53633816 53633948 -32061806 - L2 LINE L2 -58 3255 3116 231 276 0 0 chr15 53635259 53635429 -32060325 + (CA)n Simple_repeat Simple_repeat 1 170 0 343 244 32 51 chr15 53636526 53636682 -32059072 + MIR3 SINE MIR 11 163 -45 207 277 11 32 chr15 53639202 53639296 -32056458 + GA-rich Low_complexity Low_complexity 4 95 0 360 0 0 0 chr15 53639488 53639528 -32056226 + (TG)n Simple_repeat Simple_repeat 2 41 0 292 295 0 11 chr15 53640072 53640167 -32055587 + MIR3 SINE MIR 81 174 -34 338 298 60 25 chr15 53640372 53640607 -32055147 + L2 LINE L2 2817 3059 -213 384 262 25 16 chr15 53643577 53643699 -32052055 - MIR3 SINE MIR -49 159 37 790 247 21 11 chr15 53644500 53644690 -32051064 + MIR SINE MIR 25 216 -46 202 292 0 0 chr15 53644793 53644841 -32050913 + L2 LINE L2 3262 3309 -4 473 265 54 7 chr15 53645084 53645231 -32050523 - L3 LINE CR1 -10 1567 1414 1916 110 0 0 chr15 53645253 53645508 -32050246 - AluSc SINE Alu -54 255 1 194 391 0 0 chr15 53647315 53647402 -32048352 + MIR SINE MIR 47 133 -75 240 321 45 27 chr15 53647711 53647823 -32047931 - MIR SINE MIR -84 178 65 627 227 41 17 chr15 53648004 53648176 -32047578 + MER5B DNA MER1_type 3 178 0 182 194 0 0 chr15 53648237 53648273 -32047481 - L2 LINE L2 -2 3311 3276 189 175 25 0 chr15 53648273 53648313 -32047441 - MER5A DNA MER1_type 0 189 149 1985 110 4 0 chr15 53648313 53648586 -32047168 + AluSx SINE Alu 23 296 -16 1226 116 0 0 chr15 53648586 53648750 -32047004 + AluSg/x SINE Alu 132 295 -15 425 245 33 0 chr15 53648750 53648886 -32046868 - MER5B DNA MER1_type -32 157 7 522 270 16 0 chr15 53649384 53649510 -32046244 - MIR SINE MIR -63 145 18 204 319 14 14 chr15 53649624 53649696 -32046058 + MIR SINE MIR 79 150 -58 216 279 73 15 chr15 53649828 53649896 -32045858 + MIR SINE MIR 110 181 -81 422 295 134 7 chr15 53650894 53651043 -32044711 - MIR3 SINE MIR -11 197 30 1079 218 71 62 chr15 53651479 53651625 -32044129 - MER2 DNA MER2_type -1 343 200 2326 90 0 0 chr15 53651625 53651924 -32043830 - AluSc SINE Alu -8 301 3 1079 218 71 62 chr15 53651924 53652117 -32043637 - MER2 DNA MER2_type -144 200 1 434 295 13 39 chr15 53652206 53652362 -32043392 + MIR SINE MIR 22 173 -89 570 307 21 11 chr15 53652429 53652618 -32043136 - MIR SINE MIR -59 203 13 330 333 72 7 chr15 53654868 53655006 -32040748 + L2 LINE L2 3125 3271 -1 315 141 0 0 chr15 53655038 53655102 -32040652 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 207 294 71 0 chr15 53655103 53655188 -32040566 - L2 LINE L2 0 3313 3223 217 314 40 16 chr15 53655204 53655328 -32040426 + L2 LINE L2 2933 3059 -213 247 322 0 0 chr15 53655620 53655679 -32040075 - L2 LINE L2 -3 3269 3211 244 301 35 92 chr15 53656367 53656540 -32039214 - MIR SINE MIR -11 251 89 * 441 275 102 12 chr15 53656529 53656696 -32039058 + L2 LINE L2 3119 3300 -13 189 107 0 0 chr15 53656696 53656724 -32039030 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 213 286 20 0 chr15 53656724 53656773 -32038981 - MIR SINE MIR -189 73 24 557 239 104 13 chr15 53657537 53657733 -32038021 + MIR SINE MIR 25 245 -17 313 307 79 0 chr15 53657735 53657849 -32037905 + MIR SINE MIR 97 219 -43 245 231 0 0 chr15 53658244 53658296 -32037458 - L2 LINE L2 0 3313 3262 1915 148 0 19 chr15 53660064 53660375 -32035379 - AluJb SINE Alu -7 305 1 512 291 134 0 chr15 53660618 53660790 -32034964 + MER91A DNA MER1_type 2 196 0 201 348 69 52 chr15 53661841 53661899 -32033855 - L2 LINE L2 -221 3051 2995 2173 108 0 10 chr15 53661899 53662204 -32033550 + AluSq SINE Alu 1 302 -11 201 348 69 52 chr15 53662204 53662378 -32033376 - L2 LINE L2 -277 2995 2815 401 166 101 65 chr15 53663929 53664068 -32031686 - MIR3 SINE MIR -63 145 2 208 152 0 65 chr15 53664302 53664348 -32031406 + GA-rich Low_complexity Low_complexity 2 44 0 274 242 15 0 chr15 53665577 53665643 -32030111 - L2 LINE L2 0 3313 3247 210 238 0 167 chr15 53666528 53666615 -32029139 - L3 LINE CR1 -127 1450 1389 2043 113 0 7 chr15 53666615 53666929 -32028825 + AluSx SINE Alu 1 312 0 210 238 0 167 chr15 53666929 53666967 -32028787 - L3 LINE CR1 -188 1389 1346 240 267 100 8 chr15 53667055 53667175 -32028579 - L2 LINE L2 -188 3125 2995 2287 173 39 5 chr15 53667190 53667601 -32028153 - MSTB LTR MaLR 0 426 2 236 310 106 26 chr15 53667923 53668036 -32027718 + MIR SINE MIR 9 130 -132 268 295 104 2 chr15 53670118 53670312 -32025442 + L3 LINE CR1 1308 1562 -15 201 133 0 0 chr15 53672000 53672030 -32023724 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 412 296 117 55 chr15 53672154 53672535 -32023219 + L1MC4a LINE L1 5630 6024 -97 852 280 21 0 chr15 53672699 53672935 -32022819 + MLT1J LTR MaLR 107 347 -164 279 79 0 0 chr15 53673107 53673145 -32022609 + (CA)n Simple_repeat Simple_repeat 2 39 0 266 265 6 53 chr15 53673329 53673356 -32022398 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 -134 2303 93 0 10 chr15 53673356 53673666 -32022088 - AluSp SINE Alu -6 307 1 266 265 6 53 chr15 53673666 53673808 -32021946 + (TCTCTG)n Simple_repeat Simple_repeat 29 163 0 315 71 0 0 chr15 53674050 53674092 -32021662 + (CA)n Simple_repeat Simple_repeat 2 43 0 2292 97 0 10 chr15 53674303 53674613 -32021141 - AluSp SINE Alu -6 307 1 353 257 11 34 chr15 53674651 53674830 -32020924 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 * 471 296 6 11 chr15 53674697 53674873 -32020881 + CT-rich Low_complexity Low_complexity 1 175 0 251 317 72 54 chr15 53675520 53675589 -32020165 + MIR3 SINE MIR 34 100 -108 3508 147 51 39 chr15 53675589 53675846 -32019908 + MER39B LTR ERV1 1 253 -400 2105 122 0 3 chr15 53675846 53676149 -32019605 + AluSx SINE Alu 5 306 -6 3508 147 51 39 chr15 53676149 53676536 -32019218 + MER39B LTR ERV1 253 653 0 251 317 72 54 chr15 53676536 53676633 -32019121 + MIR3 SINE MIR 100 203 -5 183 252 76 84 chr15 53676745 53676864 -32018890 - MIR3 SINE MIR -87 121 4 212 91 30 0 chr15 53677454 53677487 -32018267 + MIR SINE MIR 112 145 -63 258 81 0 0 chr15 53677799 53677836 -32017918 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1997 113 19 13 chr15 53678145 53678455 -32017299 + L1MB2 LINE L1 5853 6164 -7 1302 88 0 6 chr15 53678632 53678856 -32016898 + AluSq SINE Alu 134 356 0 276 299 161 7 chr15 53679211 53679348 -32016406 - MIR3 SINE MIR 0 208 51 1478 167 31 27 chr15 53680551 53680844 -32014910 + L1MB4 LINE L1 5887 6180 0 2169 103 0 3 chr15 53680845 53681135 -32014619 - AluSx SINE Alu -22 290 2 2253 94 7 3 chr15 53681198 53681497 -32014257 - AluSq SINE Alu -13 300 1 267 248 30 59 chr15 53682436 53682537 -32013217 + MIR3 SINE MIR 110 207 -1 285 215 57 6 chr15 53682571 53682661 -32013093 + MIR SINE MIR 46 137 -71 551 278 136 36 chr15 53682800 53683042 -32012712 - MLT1L LTR MaLR -18 597 300 1923 123 17 7 chr15 53683042 53683335 -32012419 - AluSx SINE Alu -15 297 2 551 278 136 36 chr15 53683335 53683481 -32012273 - MLT1L LTR MaLR -315 300 170 260 311 73 17 chr15 53684043 53684220 -32011534 + L2 LINE L2 2828 3014 -258 258 56 0 0 chr15 53684310 53684346 -32011408 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 340 273 25 63 chr15 53684491 53684704 -32011050 - MIR SINE MIR -59 203 1 353 287 64 16 chr15 53686414 53686602 -32009152 + L1ME LINE L1 5539 5735 -386 2008 124 0 3 chr15 53686879 53687204 -32008550 - AluSx SINE Alu 0 324 1 180 217 0 0 chr15 53688204 53688250 -32007504 + (CACCC)n Simple_repeat Simple_repeat 4 49 0 185 311 151 25 chr15 53688436 53688555 -32007199 + MIR SINE MIR 11 144 -118 885 267 5 14 chr15 53688583 53688800 -32006954 + MIR SINE MIR 4 218 -44 1639 217 142 59 chr15 53689506 53690082 -32005672 - MLT1E2 LTR MaLR -2 624 1 225 0 0 0 chr15 53691163 53691188 -32004566 + (CA)n Simple_repeat Simple_repeat 1 25 0 316 305 45 65 chr15 53691883 53692083 -32003671 - L2 LINE L2 -14 3299 3104 360 278 75 43 chr15 53692758 53692945 -32002809 - L3 LINE CR1 -84 1493 1301 2233 117 0 0 chr15 53693335 53693642 -32002112 + AluSg SINE Alu 1 307 -3 255 290 99 49 chr15 53693676 53693838 -32001916 - L3 LINE CR1 -273 1304 1135 1317 61 6 0 chr15 53694930 53695095 -32000659 + AluSq SINE Alu 22 187 -126 549 132 22 0 chr15 53695095 53695186 -32000568 + AluSg/x SINE Alu 218 310 0 529 338 201 17 chr15 53695469 53696105 -31999649 - L3 LINE CR1 -108 1469 717 340 341 82 0 chr15 53696226 53696361 -31999393 + MIR SINE MIR 103 248 -14 285 291 18 45 chr15 53696329 53696439 -31999315 - L3 LINE CR1 -862 715 609 * 1567 167 0 4 chr15 53696801 53697047 -31998707 + AluJb SINE Alu 1 245 -67 611 176 0 19 chr15 53697049 53697157 -31998597 + AluJb SINE Alu 176 281 -31 1885 131 0 0 chr15 53697542 53697809 -31997945 - AluSg SINE Alu -7 303 37 307 344 86 39 chr15 53697915 53698244 -31997510 - L2 LINE L2 -215 3057 2668 288 130 0 0 chr15 53700769 53700815 -31994939 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 251 368 18 18 chr15 53701580 53701694 -31994060 + L3 LINE CR1 1461 1574 -3 29 28 0 0 chr15 53701797 53701833 -31993921 + AT_rich Low_complexity Low_complexity 1 36 0 2231 108 0 3 chr15 53701835 53702140 -31993614 + AluSg SINE Alu 1 304 -6 1068 236 115 51 chr15 53702539 53703097 -31992657 - L2 LINE L2 0 3313 2712 2203 94 0 3 chr15 53703712 53704020 -31991734 + AluSp SINE Alu 1 307 0 1892 171 3 3 chr15 53704781 53705090 -31990664 + AluJo SINE Alu 1 309 -3 318 106 0 0 chr15 53705625 53705672 -31990082 + (ATG)n Simple_repeat Simple_repeat 1 47 0 246 358 22 15 chr15 53705754 53705891 -31989863 + L3b LINE CR1 1241 1378 -205 1060 118 26 0 chr15 53705892 53706076 -31989678 - AluSp SINE Alu 0 317 130 2249 103 0 0 chr15 53706079 53706380 -31989374 - AluSc SINE Alu -8 301 1 214 341 35 0 chr15 53706744 53706829 -31988925 + L2 LINE L2 3185 3272 0 307 272 0 68 chr15 53706854 53706957 -31988797 - MIR3 SINE MIR -23 185 90 225 167 0 0 chr15 53707211 53707265 -31988489 + CT-rich Low_complexity Low_complexity 1 54 0 196 186 23 0 chr15 53708865 53708908 -31986846 + L2 LINE L2 3269 3312 -1 439 208 15 0 chr15 53709175 53709305 -31986449 + CT-rich Low_complexity Low_complexity 2 133 0 540 234 27 0 chr15 53709973 53710084 -31985670 + MER81 DNA DNA 1 114 0 230 283 53 18 chr15 53710218 53710331 -31985423 + MIR3 SINE MIR 60 176 -32 214 294 0 0 chr15 53711333 53711384 -31984370 + GA-rich Low_complexity Low_complexity 4 54 0 432 295 22 36 chr15 53711451 53711590 -31984164 + MIR SINE MIR 51 187 -75 291 308 164 28 chr15 53712167 53712307 -31983447 + MER115 DNA AcHobo 53 173 -520 2186 120 0 10 chr15 53712307 53712616 -31983138 - AluSx SINE Alu -6 306 1 291 308 164 28 chr15 53712616 53712725 -31983029 + MER115 DNA AcHobo 173 336 -357 260 211 0 0 chr15 53712737 53712789 -31982965 + Zaphod DNA AcHobo 3980 4031 0 195 100 0 0 chr15 53713086 53713116 -31982638 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 400 331 36 12 chr15 53713200 53713366 -31982388 + MIR SINE MIR 51 220 -42 222 205 17 20 chr15 53713959 53714030 -31981724 + MIR SINE MIR 81 138 -70 265 278 211 0 chr15 53714217 53714350 -31981404 + MIR3 SINE MIR 6 166 -42 339 342 104 0 chr15 53714688 53714890 -31980864 - MIR SINE MIR -7 255 33 350 231 185 56 chr15 53715066 53715282 -31980472 - MER115 DNA AcHobo -35 658 415 760 218 109 9 chr15 53715376 53715587 -31980167 - MER115 DNA AcHobo -461 232 1 267 54 0 0 chr15 53715720 53715757 -31979997 + (CA)n Simple_repeat Simple_repeat 2 38 0 236 267 10 79 chr15 53716667 53716768 -31978986 + L2 LINE L2 3176 3269 -3 219 339 15 0 chr15 53716866 53716931 -31978823 + MIR SINE MIR 118 183 -79 1750 167 0 23 chr15 53717241 53717547 -31978207 + AluJo SINE Alu 7 305 -7 2195 103 3 3 chr15 53717626 53717927 -31977827 + AluSc SINE Alu 1 301 -8 1388 187 66 52 chr15 53718837 53719244 -31976510 - MER90 LTR ERV1 -8 606 194 429 263 170 41 chr15 53719380 53719574 -31976180 - MIR SINE MIR -31 231 13 1790 112 0 4 chr15 53720779 53721038 -31974716 - AluSx SINE Alu -1 311 54 644 341 58 24 chr15 53721286 53721697 -31974057 + L2 LINE L2 2807 3231 -41 368 370 34 7 chr15 53722814 53722960 -31972794 + MIR SINE MIR 97 246 -16 708 272 33 0 chr15 53724137 53724321 -31971433 - MIR SINE MIR -10 252 63 2225 82 0 44 chr15 53724447 53724765 -31970989 + AluY SINE Alu 1 304 -7 494 312 70 11 chr15 53726024 53726210 -31969544 - MIR3 SINE MIR -8 200 4 207 306 0 0 chr15 53727577 53727626 -31968128 - MIR SINE MIR -130 78 30 285 382 0 0 chr15 53728315 53728493 -31967261 + (CCCTAA)n Simple_repeat Simple_repeat 1 178 0 201 397 0 0 chr15 53728529 53728685 -31967069 + (CCCTAA)n Simple_repeat Simple_repeat 5 160 0 241 311 7 34 chr15 53729901 53730049 -31965705 + GA-rich Low_complexity Low_complexity 6 149 0 230 355 72 0 chr15 53731004 53731142 -31964612 - MIR3 SINE MIR -56 152 5 1997 114 0 46 chr15 53733006 53733341 -31962413 - AluSx SINE Alu 0 323 3 961 104 7 0 chr15 53733343 53733478 -31962276 - AluSq/x SINE Alu -176 136 1 429 211 17 64 chr15 53733925 53734064 -31961690 - MLT1H1 LTR MaLR 0 555 437 276 250 45 34 chr15 53734292 53734380 -31961374 + MIR3 SINE MIR 77 165 -43 2190 117 0 3 chr15 53734950 53735248 -31960506 + AluSg SINE Alu 9 305 -5 4095 126 51 14 chr15 53735248 53736600 -31959154 - MER51B-int LTR ERV1 -6327 1489 1 2076 111 63 3 chr15 53736602 53736952 -31958802 - MER51B LTR ERV1 0 377 7 528 331 46 0 chr15 53736973 53737148 -31958606 - MIR SINE MIR -72 190 8 26 0 0 0 chr15 53737423 53737449 -31958305 + AT_rich Low_complexity Low_complexity 1 26 0 900 146 6 48 chr15 53737547 53737712 -31958042 - FRAM SINE Alu -8 158 1 448 309 41 10 chr15 53737716 53737910 -31957844 - L1ME4a LINE L1 -295 5826 5627 922 148 31 20 chr15 53738274 53738470 -31957284 - MLT1B LTR MaLR -48 342 145 1779 139 42 3 chr15 53738490 53738778 -31956976 + AluJb SINE Alu 6 304 -8 534 297 7 14 chr15 53739237 53739382 -31956372 - MIR SINE MIR -60 202 59 258 32 0 0 chr15 53739768 53739799 -31955955 + (ATG)n Simple_repeat Simple_repeat 3 33 0 289 348 43 17 chr15 53739903 53740018 -31955736 - L2 LINE L2 -21 3251 3134 498 202 0 0 chr15 53740089 53740178 -31955576 - AluJb SINE Alu -16 296 208 919 309 90 16 chr15 53740819 53741253 -31954501 + L2 LINE L2 2848 3313 0 224 287 11 11 chr15 53741923 53742010 -31953744 + GA-rich Low_complexity Low_complexity 2 88 0 630 159 42 112 chr15 53742700 53742775 -31952979 - MER115 DNA AcHobo 0 693 614 2153 95 3 0 chr15 53742775 53743086 -31952668 - AluSp SINE Alu 0 312 1 1997 110 3 98 chr15 53743091 53743437 -31952317 - AluSq SINE Alu 0 313 1 630 159 42 112 chr15 53743437 53743568 -31952186 - MER115 DNA AcHobo -83 610 495 * 1111 176 67 77 chr15 53743558 53743817 -31951937 + MLT1C LTR MaLR 159 416 -51 2000 131 10 0 chr15 53743817 53744130 -31951624 - AluSx SINE Alu 0 312 1 1111 176 67 77 chr15 53744130 53744182 -31951572 + MLT1C LTR MaLR 416 467 0 419 248 44 18 chr15 53744381 53744494 -31951260 - HAL1b LINE L1 -504 844 729 314 287 9 65 chr15 53744501 53744609 -31951145 - HAL1 LINE L1 -332 2175 2074 251 354 88 17 chr15 53746029 53746210 -31949544 - L2 LINE L2 -209 3063 2870 537 189 233 6 chr15 53747287 53747446 -31948308 + MIR SINE MIR 54 248 -14 2097 114 0 3 chr15 53748330 53748619 -31947135 + AluSg SINE Alu 1 288 -22 213 340 40 71 chr15 53748635 53748663 -31947091 - L2 LINE L2 -98 3174 3147 2221 168 23 16 chr15 53748663 53749050 -31946704 - MLT1B LTR MaLR 0 390 1 213 340 40 71 chr15 53749050 53749274 -31946480 - L2 LINE L2 -125 3147 2930 2164 102 0 0 chr15 53753849 53754152 -31941602 - AluSx SINE Alu 0 303 1 439 206 0 0 chr15 53754315 53754419 -31941335 + AluY SINE Alu 209 312 0 2738 83 5 16 chr15 53754569 53754992 -31940762 + MER11C LTR ERVK 640 1057 -14 485 366 12 8 chr15 53755053 53755296 -31940458 + HERV16 LTR ERVL 1275 1518 -3478 1765 174 0 7 chr15 53755358 53755652 -31940102 - AluJo SINE Alu -7 305 14 1119 314 68 20 chr15 53755717 53756279 -31939475 + HERV16 LTR ERVL 1710 2356 -2738 1066 212 71 31 chr15 53756290 53756644 -31939110 - L1MEc LINE L1 -4414 1982 1615 * 2154 264 77 31 chr15 53756638 53756650 -31939104 - L1MEc LINE L1 -5281 1115 1105 944 111 0 22 chr15 53756650 53756785 -31938969 - FLAM_C SINE Alu -1 132 1 2154 264 77 31 chr15 53756785 53756849 -31938905 - L1MEc LINE L1 -5291 1105 1045 2019 137 7 0 chr15 53756849 53757148 -31938606 - AluJo SINE Alu -11 301 1 2154 264 77 31 chr15 53757148 53757341 -31938413 - L1MEc LINE L1 -5351 1045 862 2000 164 0 0 chr15 53757341 53757651 -31938103 - AluSx SINE Alu -2 310 1 2154 264 77 31 chr15 53757651 53758411 -31937343 - L1MEc LINE L1 -5534 862 37 859 208 60 0 chr15 53758435 53758603 -31937151 - AluSg/x SINE Alu -14 298 121 227 227 47 31 chr15 53758603 53758731 -31937023 - L1M LINE L1 -2397 5411 5282 487 340 54 60 chr15 53758758 53759611 -31936143 + L1MEc LINE L1 37 884 -5512 810 171 0 0 chr15 53759615 53759738 -31936016 + FLAM_C SINE Alu 3 125 -8 1775 154 16 0 chr15 53759767 53760072 -31935682 + MER1B DNA MER1_type 1 310 -29 1002 161 0 0 chr15 53760080 53760235 -31935519 + AluJb SINE Alu 145 299 -13 2070 138 0 0 chr15 53760236 53760534 -31935220 + AluSq SINE Alu 1 298 -15 252 282 12 0 chr15 53760535 53760620 -31935134 + L1MCc LINE L1 1393 1478 -4945 482 131 123 0 chr15 53760641 53760771 -31934983 + MER53 DNA DNA 40 185 -4 721 315 40 8 chr15 53762731 53762982 -31932772 - MIR SINE MIR -2 260 2 313 303 8 67 chr15 53763008 53763127 -31932627 + L1ME4a LINE L1 5859 5970 -151 254 83 0 0 chr15 53763242 53763278 -31932476 - AluJ/FRAM SINE Alu -53 249 214 302 291 105 0 chr15 53763781 53763936 -31931818 + MIR SINE MIR 28 212 -50 250 303 91 10 chr15 53764153 53764252 -31931502 + L2 LINE L2 2543 2649 -665 2149 123 0 0 chr15 53764630 53764931 -31930823 - AluSx SINE Alu -11 301 1 267 289 105 18 chr15 53765786 53765900 -31929854 + MIR SINE MIR 110 233 -29 1961 148 0 0 chr15 53765947 53766230 -31929524 - AluJo SINE Alu -17 295 13 331 260 110 35 chr15 53766824 53767024 -31928730 - L2 LINE L2 -216 3056 2842 237 139 0 0 chr15 53767303 53767346 -31928408 + (GGA)n Simple_repeat Simple_repeat 1 43 0 223 104 42 0 chr15 53767385 53767433 -31928321 + GA-rich Low_complexity Low_complexity 3 52 0 302 245 214 0 chr15 53767944 53768042 -31927712 + L1ME3 LINE L1 5778 5896 -266 226 225 6 23 chr15 53769870 53769948 -31925806 + L2 LINE L2 2921 2995 -318 209 288 17 0 chr15 53771193 53771252 -31924502 + L2 LINE L2 3213 3272 0 356 328 81 7 chr15 53772625 53772829 -31922925 + MIR SINE MIR 18 253 -9 227 275 130 0 chr15 53773690 53773759 -31921995 - MIR3 SINE MIR -41 167 90 2071 137 0 0 chr15 53773902 53774194 -31921560 - AluSx SINE Alu -20 292 1 458 258 104 0 chr15 53774273 53774436 -31921318 - MIR SINE MIR -13 249 70 263 318 16 23 chr15 53774501 53774630 -31921124 + GA-rich Low_complexity Low_complexity 3 130 0 422 267 35 21 chr15 53774979 53775151 -31920603 + MIR SINE MIR 16 143 -65 230 309 11 34 chr15 53776009 53776184 -31919570 + (CATA)n Simple_repeat Simple_repeat 4 174 0 * 357 294 15 7 chr15 53776134 53776270 -31919484 + (CA)n Simple_repeat Simple_repeat 2 138 0 820 279 69 12 chr15 53778801 53779048 -31916706 + MIR SINE MIR 2 262 0 23 0 0 0 chr15 53779054 53779077 -31916677 + AT_rich Low_complexity Low_complexity 1 23 0 369 216 0 0 chr15 53781242 53781330 -31914424 + (CA)n Simple_repeat Simple_repeat 2 89 0 330 254 123 0 chr15 53783837 53783951 -31911803 + L2 LINE L2 3144 3271 -1 330 311 103 32 chr15 53784751 53784891 -31910863 - L2 LINE L2 -998 2316 2187 2278 110 0 0 chr15 53784891 53785199 -31910555 + AluSq SINE Alu 1 308 -5 330 311 103 32 chr15 53785199 53785370 -31910384 - L2 LINE L2 -1127 2187 1983 249 242 0 0 chr15 53785545 53785607 -31910147 + Charlie8 DNA MER1_type 105 166 -2251 2327 95 0 0 chr15 53785612 53785918 -31909836 + AluSg SINE Alu 3 308 -2 820 128 7 43 chr15 53785926 53786067 -31909687 + AluJb SINE Alu 1 136 -176 192 244 130 43 chr15 53786235 53786350 -31909404 + MIR SINE MIR 19 143 -119 211 337 12 12 chr15 53787307 53787390 -31908364 + MIR SINE MIR 67 149 -113 487 294 9 51 chr15 53787840 53788054 -31907700 + MIR SINE MIR 47 251 -11 383 340 35 0 chr15 53788813 53788954 -31906800 - MIR3 SINE MIR -47 161 16 254 296 11 34 chr15 53789091 53789179 -31906575 - MIR SINE MIR -123 139 54 * 368 364 128 29 chr15 53789169 53789867 -31905887 - L2 LINE L2 -4 3268 2488 2332 85 0 7 chr15 53790423 53790730 -31905024 - AluY SINE Alu -6 305 1 195 258 103 41 chr15 53791006 53791103 -31904651 - L2 LINE L2 -1352 1962 1860 342 246 25 85 chr15 53791591 53791631 -31904123 + L1MC4 LINE L1 6593 6634 -1408 2726 155 36 38 chr15 53791631 53791847 -31903907 - L1MA9 LINE L1 -1 6311 6096 2211 105 0 0 chr15 53791847 53792141 -31903613 - AluSx SINE Alu -18 294 1 2726 155 36 38 chr15 53792141 53792454 -31903300 - L1MA9 LINE L1 -216 6096 5783 342 246 25 85 chr15 53792454 53792531 -31903223 + L1MC4 LINE L1 6634 6703 -1339 225 0 0 0 chr15 53792537 53792562 -31903192 + (TG)n Simple_repeat Simple_repeat 2 26 0 520 157 0 28 chr15 53792567 53792675 -31903079 - L1MA9 LINE L1 -519 5793 5689 514 130 13 0 chr15 53792675 53792752 -31903002 - AluS SINE Alu -234 78 1 2309 89 0 10 chr15 53792761 53793074 -31902680 - AluSg SINE Alu 0 310 1 2432 147 13 11 chr15 53793075 53793757 -31901997 - L1MA9 LINE L1 -627 5685 5001 2024 116 42 0 chr15 53795982 53796266 -31899488 - AluSx SINE Alu -16 296 1 192 241 37 0 chr15 53797500 53797554 -31898200 - MIR SINE MIR -56 152 97 265 336 96 7 chr15 53797634 53797780 -31897974 + MIR3 SINE MIR 33 191 -17 1712 257 88 20 chr15 53797924 53798602 -31897152 + L2 LINE L2 2294 3012 -301 1923 124 45 0 chr15 53799048 53799339 -31896415 + AluSx SINE Alu 1 304 -8 209 292 195 9 chr15 53799339 53799452 -31896302 + MIR3 SINE MIR 48 181 -27 290 281 10 42 chr15 53800307 53800403 -31895351 - MIR SINE MIR -162 100 8 219 331 169 14 chr15 53800790 53800938 -31894816 + MIR3 SINE MIR 20 190 -18 383 271 23 47 chr15 53800978 53801107 -31894647 - MIR SINE MIR -67 141 16 483 297 140 44 chr15 53801217 53801510 -31894244 + L1M4 LINE L1 5070 5390 -756 2040 78 67 3 chr15 53801515 53801797 -31893957 - AluSq SINE Alu -13 300 1 1949 99 62 0 chr15 53801804 53802077 -31893677 - AluSg SINE Alu -20 290 1 480 206 0 11 chr15 53802648 53802740 -31893014 - L2 LINE L2 -13 3300 3210 260 278 89 0 chr15 53803014 53803104 -31892650 - MIR3 SINE MIR -7 201 104 184 282 0 0 chr15 53804245 53804284 -31891470 - MIR SINE MIR -20 242 204 191 355 45 9 chr15 53804321 53804431 -31891323 - L2 LINE L2 -205 3067 2954 199 294 48 87 chr15 53804629 53804755 -31890999 - MIR SINE MIR -60 148 28 445 236 142 0 chr15 53805012 53805160 -31890594 + MER96 DNA MER1_type? 7 175 0 317 339 137 0 chr15 53806106 53806230 -31889524 + MIR SINE MIR 79 219 -43 333 298 130 30 chr15 53807157 53807288 -31888466 - MIR SINE MIR -41 221 78 631 251 78 25 chr15 53807464 53807707 -31888047 + LTR33 LTR ERVL 266 521 0 746 303 24 16 chr15 53807803 53807909 -31887845 - MIR SINE MIR -8 254 150 2139 107 10 3 chr15 53807909 53808208 -31887546 - AluSx SINE Alu -11 301 1 746 303 24 16 chr15 53808208 53808352 -31887402 - MIR SINE MIR -112 150 2 407 361 28 11 chr15 53809005 53809185 -31886569 + MIR SINE MIR 20 202 -60 350 345 115 42 chr15 53809773 53810173 -31885581 + L2 LINE L2 2842 3270 -2 400 186 121 93 chr15 53810344 53810422 -31885332 - MIR SINE MIR -40 222 137 2174 113 3 0 chr15 53810422 53810731 -31885023 - AluSx SINE Alu -2 310 1 400 186 121 93 chr15 53810731 53810792 -31884962 - MIR SINE MIR -125 137 79 192 237 0 103 chr15 53811368 53811465 -31884289 + L2 LINE L2 2868 2954 -318 402 201 186 29 chr15 53811544 53811715 -31884039 - MIR SINE MIR -55 207 15 192 300 60 50 chr15 53811799 53811899 -31883855 + L2 LINE L2 3213 3313 0 484 284 86 0 chr15 53812065 53812227 -31883527 - MIR SINE MIR -71 191 16 280 350 22 61 chr15 53812673 53812853 -31882901 + MIR SINE MIR 22 194 -68 2254 94 0 3 chr15 53813098 53813395 -31882359 - AluSg SINE Alu -14 296 1 398 329 81 24 chr15 53813469 53813679 -31882075 - MIR SINE MIR -8 254 33 207 0 0 0 chr15 53813860 53813883 -31881871 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 351 0 0 0 chr15 53814785 53814824 -31880930 + (CA)n Simple_repeat Simple_repeat 1 39 0 440 298 83 22 chr15 53815159 53815387 -31880367 - MIR SINE MIR -13 249 8 546 79 0 0 chr15 53816145 53816221 -31879533 + (TG)n Simple_repeat Simple_repeat 1 76 0 234 91 0 0 chr15 53817396 53817429 -31878325 + (A)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr15 53818698 53818722 -31877032 + (A)n Simple_repeat Simple_repeat 1 24 0 204 62 31 0 chr15 53818858 53818890 -31876864 - L2 LINE L2 -222 3050 3018 199 321 101 9 chr15 53819530 53819639 -31876115 + L2 LINE L2 3193 3311 -2 234 0 0 0 chr15 53820327 53820353 -31875401 + (A)n Simple_repeat Simple_repeat 1 26 0 224 105 26 0 chr15 53820489 53820527 -31875227 - L2 LINE L2 -222 3050 3012 199 321 101 9 chr15 53821161 53821270 -31874484 + L2 LINE L2 3193 3311 -2 195 186 0 0 chr15 53821833 53821876 -31873878 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 194 339 101 53 chr15 53823427 53823654 -31872100 + L2 LINE L2 3019 3256 -16 231 306 119 78 chr15 53823696 53823889 -31871865 - MIR SINE MIR -28 234 34 666 227 43 18 chr15 53824501 53824664 -31871090 - L2 LINE L2 0 3313 3147 1310 158 74 44 chr15 53874681 53874895 -31820859 - L1MC4a LINE L1 -368 7440 7213 1694 142 16 23 chr15 53874895 53875198 -31820556 - AluJo SINE Alu -11 301 1 1310 158 74 44 chr15 53875198 53875280 -31820474 - L1MC4a LINE L1 -595 7213 7135 458 268 169 24 chr15 53875522 53875735 -31820019 + MLT1J1 LTR MaLR 36 279 -167 1587 131 8 15 chr15 53875852 53876111 -31819643 + AluJb SINE Alu 38 294 -18 1741 104 7 45 chr15 53876596 53876776 -31818978 - AluSx SINE Alu -3 309 143 2347 69 0 10 chr15 53876776 53877082 -31818672 - AluY SINE Alu -8 303 1 1741 104 7 45 chr15 53877082 53877188 -31818566 - AluSx SINE Alu -169 143 34 1403 152 93 16 chr15 53877461 53877718 -31818036 - AluJo SINE Alu -30 282 6 552 135 16 71 chr15 53877733 53877799 -31817955 - L1MC4 LINE L1 0 8042 7985 1928 111 0 59 chr15 53877799 53877971 -31817783 - AluSx SINE Alu -7 305 159 2124 101 0 7 chr15 53877971 53878294 -31817460 - AluSg SINE Alu 0 310 1 1928 111 0 59 chr15 53878294 53878445 -31817309 - AluSx SINE Alu -153 159 1 552 135 16 71 chr15 53878445 53878504 -31817250 - L1MC4 LINE L1 -57 7985 7924 2221 112 0 0 chr15 53878504 53878809 -31816945 - AluSg SINE Alu -5 305 1 305 198 0 58 chr15 53878809 53878870 -31816884 - L1MC4 LINE L1 -60 7982 7926 243 0 0 0 chr15 53878870 53878897 -31816857 + (TC)n Simple_repeat Simple_repeat 2 28 0 305 198 0 58 chr15 53878897 53878921 -31816833 - L1MC4 LINE L1 -116 7926 7902 255 242 0 16 chr15 53878921 53878983 -31816771 + (CATA)n Simple_repeat Simple_repeat 2 62 0 397 220 18 9 chr15 53878983 53879092 -31816662 - L1MC4 LINE L1 -124 7918 7809 2248 92 3 3 chr15 53879563 53879868 -31815886 + AluSc SINE Alu 1 305 -4 945 133 0 0 chr15 53880203 53880338 -31815416 + AluSq/x SINE Alu 1 135 -178 573 134 0 0 chr15 53880438 53880520 -31815234 - AluSq SINE Alu -101 212 131 321 89 0 0 chr15 53880520 53880565 -31815189 + (TG)n Simple_repeat Simple_repeat 2 46 0 189 0 0 0 chr15 53880565 53880586 -31815168 + (TA)n Simple_repeat Simple_repeat 1 21 0 2150 116 7 0 chr15 53880586 53880887 -31814867 - AluSx SINE Alu -9 303 1 1247 114 17 0 chr15 53880888 53881063 -31814691 - AluSg/x SINE Alu -9 303 126 2447 61 0 10 chr15 53881063 53881375 -31814379 - AluY SINE Alu -2 309 1 1263 170 115 7 chr15 53881377 53881647 -31814107 - AluSx SINE Alu -12 300 2 1026 281 11 25 chr15 53881647 53881681 -31814073 - HERV16 LTR ERVL -3720 1276 1243 1106 189 26 169 chr15 53881681 53882142 -31813612 + MSTD LTR MaLR 1 395 -1 1026 281 11 25 chr15 53882142 53882388 -31813366 - HERV16 LTR ERVL -3753 1243 1000 983 106 55 126 chr15 53882495 53882551 -31813203 + Tigger1 DNA MER2_type 2181 2239 -179 915 125 0 0 chr15 53882551 53882695 -31813059 - L1MA5A LINE L1 -6 6291 6148 983 106 55 126 chr15 53882695 53882893 -31812861 + Tigger1 DNA MER2_type 2239 2417 -1 410 268 92 7 chr15 53882906 53883048 -31812706 + L1MCa LINE L1 2195 2348 -4078 1981 141 0 0 chr15 53883083 53883374 -31812380 + AluSx SINE Alu 1 291 -21 2187 100 0 10 chr15 53883377 53883688 -31812066 + AluY SINE Alu 1 308 -3 1320 91 0 11 chr15 53883691 53883906 -31811848 + AluSp SINE Alu 130 313 0 989 239 46 0 chr15 53884831 53885116 -31810638 - L1M4 LINE L1 -1120 5026 4729 378 238 169 29 chr15 53885149 53885321 -31810433 - L1ME4a LINE L1 -95 6026 5831 967 204 61 73 chr15 53885326 53885669 -31810085 - L1MC4 LINE L1 0 8042 7704 1243 199 7 134 chr15 53885735 53886168 -31809586 - L1MC4 LINE L1 -1202 6840 6463 2234 104 135 23 chr15 53886187 53886572 -31809182 + MSTA LTR MaLR 1 428 0 1039 217 36 30 chr15 53886585 53886922 -31808832 - L1MC5 LINE L1 -926 6882 6542 1669 158 0 0 chr15 53886956 53887222 -31808532 - AluJb SINE Alu -11 301 36 1224 118 54 54 chr15 53887847 53887907 -31807847 + AluSg/x SINE Alu 85 144 -168 2392 54 7 0 chr15 53887907 53888202 -31807552 + AluY SINE Alu 1 297 -14 1224 118 54 54 chr15 53888202 53888362 -31807392 + AluSg/x SINE Alu 143 305 -7 767 61 0 0 chr15 53888362 53888460 -31807294 + (TA)n Simple_repeat Simple_repeat 2 99 0 45 0 0 0 chr15 53888479 53888524 -31807230 + AT_rich Low_complexity Low_complexity 1 45 0 446 255 96 13 chr15 53889219 53889376 -31806378 + MLT1J2 LTR MaLR 1 170 -280 280 297 67 36 chr15 53889385 53889550 -31806204 + MLT1J2 LTR MaLR 281 450 0 192 97 0 0 chr15 53889651 53889682 -31806072 + (T)n Simple_repeat Simple_repeat 1 31 0 2032 102 7 10 chr15 53889732 53890035 -31805719 + AluY SINE Alu 2 303 -8 1366 153 9 0 chr15 53890094 53890317 -31805437 - AluJo SINE Alu -30 282 58 1390 285 25 73 chr15 53890429 53890468 -31805286 + HERV16 LTR ERVL 2655 2694 -2302 1163 107 174 0 chr15 53890468 53890543 -31805211 - MER30 DNA MER1_type 0 230 169 2199 111 0 0 chr15 53890543 53890840 -31804914 - AluSx SINE Alu -15 297 1 1163 107 174 0 chr15 53890840 53890960 -31804794 - MER30 DNA MER1_type -61 169 1 1390 285 25 73 chr15 53890960 53891128 -31804626 + HERV16 LTR ERVL 2694 2869 -2127 2309 68 0 0 chr15 53891128 53891422 -31804332 - AluY SINE Alu -16 295 2 1905 117 45 3 chr15 53891426 53891717 -31804037 - AluSx SINE Alu -9 303 1 1390 285 25 73 chr15 53891717 53891952 -31803802 + HERV16 LTR ERVL 2872 3081 -1915 249 121 0 0 chr15 53892176 53892209 -31803545 + Alu SINE Alu 1 33 -266 625 174 0 0 chr15 53892309 53892407 -31803347 - AluJ/FLAM SINE Alu -213 99 2 2326 90 0 6 chr15 53892466 53892778 -31802976 + AluSg SINE Alu 1 310 0 2645 143 7 12 chr15 53893029 53893449 -31802305 + Tigger1 DNA MER2_type 114 531 -1887 2366 71 0 3 chr15 53893449 53893757 -31801997 + AluY SINE Alu 1 307 -4 1004 128 0 7 chr15 53893757 53893905 -31801849 + Tigger1 DNA MER2_type 1471 1617 -801 1771 166 3 10 chr15 53893908 53894209 -31801545 + AluJo SINE Alu 1 299 -13 742 130 26 0 chr15 53894209 53894324 -31801430 + Tigger1 DNA MER2_type 2038 2155 -263 1269 168 104 39 chr15 53894507 53894787 -31800967 - AluJb SINE Alu -4 298 1 1880 127 17 3 chr15 53894793 53895085 -31800669 - AluSq SINE Alu -17 296 1 1843 129 18 0 chr15 53895089 53895394 -31800360 - AluSx SINE Alu 0 310 1 1627 167 10 13 chr15 53895396 53895701 -31800053 - AluJo SINE Alu -8 304 1 748 283 38 0 chr15 53895704 53895888 -31799866 - L2 LINE L2 -280 3033 2843 2042 121 3 0 chr15 53895888 53896185 -31799569 - AluSx SINE Alu -9 303 6 974 138 0 0 chr15 53896186 53896324 -31799430 - AluSq/x SINE Alu -175 138 1 227 275 50 25 chr15 53896325 53896405 -31799349 - L2 LINE L2 -457 2857 2776 824 56 37 0 chr15 53896507 53896614 -31799140 + AluSg/x SINE Alu 170 280 -32 462 244 82 22 chr15 53897255 53897390 -31798364 - MIR SINE MIR -53 209 67 1555 121 8 8 chr15 53898883 53899122 -31796632 - AluSx SINE Alu -16 296 58 713 160 0 0 chr15 53899252 53899358 -31796396 - FLAM_A SINE Alu -32 110 5 2220 111 0 0 chr15 53899773 53900079 -31795675 + AluSc SINE Alu 2 307 -2 2132 115 0 0 chr15 53900643 53900938 -31794816 + AluSx SINE Alu 1 295 -17 1565 159 69 0 chr15 53901226 53901502 -31794252 + AluJb SINE Alu 3 297 -15 2168 121 0 0 chr15 53901504 53901811 -31793943 + AluSq SINE Alu 1 307 -6 2279 93 6 0 chr15 53901814 53902125 -31793629 + AluSp SINE Alu 1 313 0 262 196 125 0 chr15 53902125 53902181 -31793573 + L1MC4 LINE L1 6920 6982 -1060 679 330 24 29 chr15 53902181 53902563 -31793191 - MER110-int LTR ERV1 -2050 2597 2218 2207 132 51 6 chr15 53902582 53902938 -31792816 - MSTA LTR MaLR -56 372 1 347 49 0 0 chr15 53903366 53903438 -31792316 + AluY SINE Alu 240 311 0 804 104 0 9 chr15 53903443 53903558 -31792196 - FLAM_C SINE Alu -19 124 11 368 246 56 0 chr15 53903603 53903729 -31792025 - L1M4 LINE L1 -913 5233 5101 386 219 60 80 chr15 53904043 53904194 -31791560 + MLT1L LTR MaLR 37 184 -431 1284 157 18 151 chr15 53904425 53904756 -31790998 + AluJb SINE Alu 1 287 -15 2124 112 0 0 chr15 53904774 53905099 -31790655 + AluSx SINE Alu 1 325 0 383 148 0 0 chr15 53905121 53905175 -31790579 + AluS SINE Alu 6 59 -244 25 0 0 0 chr15 53905182 53905207 -31790547 + AT_rich Low_complexity Low_complexity 1 25 0 626 191 9 0 chr15 53905359 53905464 -31790290 + MER45A DNA AcHobo 2 107 -71 996 32 32 0 chr15 53905480 53905606 -31790148 - L1PA5 LINE L1 0 6154 6025 306 128 0 0 chr15 53905614 53905661 -31790093 + MER45A DNA AcHobo 98 144 -34 1272 269 3 127 chr15 53905666 53906012 -31789742 - AluSq SINE Alu 0 303 1 298 246 52 22 chr15 53906064 53906198 -31789556 + L1ME4a LINE L1 5982 6119 -2 297 202 303 96 chr15 53906280 53906478 -31789276 + MIR SINE MIR 22 260 -2 754 290 156 66 chr15 53906579 53907290 -31788464 + L1MEd LINE L1 62 836 -5283 474 293 138 78 chr15 53907404 53907804 -31787950 + L1MEd LINE L1 831 1266 -4863 2381 63 3 3 chr15 53907804 53908107 -31787647 + AluY SINE Alu 1 303 -8 474 293 138 78 chr15 53908107 53908191 -31787563 + L1MEd LINE L1 1266 1344 -4785 861 107 8 8 chr15 53908196 53908327 -31787427 + Tigger1 DNA MER2_type 368 498 -1920 388 337 68 12 chr15 53908327 53908490 -31787264 + HAL1 LINE L1 1489 1660 -847 1068 241 5 5 chr15 53908799 53909023 -31786731 + MER58A DNA MER1_type 1 224 0 333 237 59 51 chr15 53909435 53909553 -31786201 - MLT1J1 LTR MaLR -42 404 286 2021 104 4 0 chr15 53909738 53910041 -31785713 + AluSx SINE Alu 3 306 0 2112 115 3 0 chr15 53910280 53910576 -31785178 + AluSx SINE Alu 1 297 -15 2282 104 0 0 chr15 53910581 53910888 -31784866 + AluSc SINE Alu 1 307 -2 220 296 70 0 chr15 53911140 53911211 -31784543 - MER91A DNA MER1_type -2 194 119 577 368 0 0 chr15 53911222 53911385 -31784369 - MER91A DNA MER1_type -20 176 14 441 113 99 0 chr15 53911580 53911651 -31784103 - AluSq/x SINE Alu -180 133 56 1261 147 9 40 chr15 53911933 53912158 -31783596 + MER20 DNA MER1_type 2 219 0 187 282 20 133 chr15 53912537 53912597 -31783157 + MIR SINE MIR 12 77 -185 2067 97 0 47 chr15 53912597 53912917 -31782837 + AluY SINE Alu 2 306 -5 187 282 20 133 chr15 53912917 53913051 -31782703 + MIR SINE MIR 77 184 -78 1289 195 35 0 chr15 53913143 53913369 -31782385 + MER8 DNA MER2_type 3 236 -3 246 333 21 0 chr15 53913660 53913756 -31781998 + L2 LINE L2 1527 1624 -1690 1604 298 140 41 chr15 53913896 53914234 -31781520 + L2 LINE L2 1690 1993 -1320 2282 97 0 0 chr15 53914234 53914545 -31781209 - AluY SINE Alu 0 311 1 180 0 0 0 chr15 53914547 53914567 -31781187 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 1585 173 18 4 chr15 53914567 53914845 -31780909 - AluJb SINE Alu -27 285 4 1604 298 140 41 chr15 53914845 53915924 -31779830 + L2 LINE L2 1992 3301 -12 1613 153 0 48 chr15 53915975 53916294 -31779460 - AluJb SINE Alu 0 305 1 5196 133 33 16 chr15 53916308 53916533 -31779221 - L1MC1 LINE L1 -1 6332 6112 2284 87 3 0 chr15 53916533 53916833 -31778921 - AluSp SINE Alu -12 301 1 5196 133 33 16 chr15 53916833 53917462 -31778292 - L1MC1 LINE L1 -221 6112 5464 743 229 88 13 chr15 53917463 53917690 -31778064 - L1MD2 LINE L1 0 6359 6116 308 312 0 0 chr15 53917717 53917810 -31777944 - L1M4 LINE L1 -3107 3039 2947 954 92 0 0 chr15 53917910 53918040 -31777714 + AluSp/q SINE Alu 178 307 -6 809 231 72 9 chr15 53918046 53918267 -31777487 - L2 LINE L2 -672 2642 2408 377 202 193 33 chr15 53918297 53918509 -31777245 + MLT1E2 LTR MaLR 3 236 -390 333 73 0 0 chr15 53918509 53918550 -31777204 - MLT2B3 LTR ERVL 0 554 514 437 49 0 16 chr15 53918552 53918613 -31777141 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 749 177 0 23 chr15 53918619 53918749 -31777005 - FLAM_C SINE Alu -15 128 2 703 81 0 49 chr15 53918752 53918875 -31776879 + Tigger1 DNA MER2_type 2221 2337 -81 2831 166 18 27 chr15 53918896 53919407 -31776347 - MLT2B3 LTR ERVL -46 508 3 1793 162 70 37 chr15 53919408 53919469 -31776285 + MLT1E2 LTR MaLR 231 288 -338 2268 112 0 0 chr15 53919469 53919781 -31775973 + AluSx SINE Alu 1 312 0 1793 162 70 37 chr15 53919781 53920102 -31775652 + MLT1E2 LTR MaLR 288 626 0 327 271 41 33 chr15 53920102 53920222 -31775532 - MLT1J LTR MaLR -367 144 24 243 169 0 0 chr15 53920250 53920297 -31775457 + Charlie5 DNA MER1_type 1 42 -2570 1090 150 0 0 chr15 53920298 53920465 -31775289 - AluSg/x SINE Alu -12 300 134 1638 180 31 0 chr15 53920465 53920754 -31775000 - AluJo SINE Alu -14 298 1 1068 231 121 65 chr15 53921213 53921945 -31773809 + L2 LINE L2 2540 3313 0 369 280 122 51 chr15 53922255 53922600 -31773154 + L1M4 LINE L1 4647 5016 -1130 1740 154 11 7 chr15 53922609 53922929 -31772825 - AluJb SINE Alu 0 321 1 518 231 41 7 chr15 53923285 53923432 -31772322 + L1MC4 LINE L1 6460 6611 -1431 2248 110 7 0 chr15 53923446 53923756 -31771998 - AluSx SINE Alu 0 312 1 542 189 32 0 chr15 53924189 53924284 -31771470 - FLAM_A SINE Alu -34 108 11 409 214 0 0 chr15 53924458 53924542 -31771212 + L1ME1 LINE L1 5829 5912 -252 7903 146 28 98 chr15 53924542 53926363 -31769391 + pTR5 LTR ERV1 743 2436 -2 633 223 214 0 chr15 53926363 53926578 -31769176 + L1ME1 LINE L1 5901 6161 -5 1851 157 3 7 chr15 53926579 53926884 -31768870 - AluSx SINE Alu -8 304 1 2228 107 10 0 chr15 53926942 53927252 -31768502 - AluSq SINE Alu 0 313 1 719 162 29 0 chr15 53927494 53927630 -31768124 + L1MA4 LINE L1 6152 6291 -9 442 361 23 14 chr15 53927640 53927856 -31767898 + L1 LINE L1 3252 3469 -2677 250 259 48 88 chr15 53928236 53928293 -31767461 - MLT1J LTR MaLR -370 141 83 2111 132 36 33 chr15 53928293 53928656 -31767098 + THE1B LTR MaLR 1 364 0 250 259 48 88 chr15 53928656 53928745 -31767009 - MLT1J LTR MaLR -428 83 1 1917 137 0 23 chr15 53929728 53930035 -31765719 - AluJo SINE Alu -12 300 1 510 275 142 21 chr15 53930478 53930718 -31765036 - MLT1J LTR MaLR -9 502 234 715 183 0 23 chr15 53930919 53931050 -31764704 + AluJ SINE Alu 2 129 -183 764 145 0 8 chr15 53931062 53931179 -31764575 - FLAM_C SINE Alu -22 121 6 1067 148 19 0 chr15 53931199 53931387 -31764367 + AluJ SINE Alu 120 310 0 360 294 72 22 chr15 53931424 53931604 -31764150 - MLT1L LTR MaLR -44 571 383 250 276 26 0 chr15 53931692 53931768 -31763986 - MLT1K LTR MaLR -376 212 135 1554 95 0 9 chr15 53932162 53932384 -31763370 - AluSg/x SINE Alu -7 303 84 1024 187 0 0 chr15 53932486 53932673 -31763081 - AluJo SINE Alu -125 187 1 230 303 53 23 chr15 53932681 53932813 -31762941 - L2 LINE L2 -2409 905 770 273 282 71 0 chr15 53933056 53933141 -31762613 - L2 LINE L2 -2906 408 318 199 24 24 73 chr15 53933520 53933561 -31762193 + (CCCCCG)n Simple_repeat Simple_repeat 3 41 0 285 75 0 0 chr15 53936332 53936372 -31759382 + (CAG)n Simple_repeat Simple_repeat 1 40 0 2157 110 0 0 chr15 53937073 53937373 -31758381 - AluY SINE Alu -11 300 1 267 279 139 41 chr15 53937765 53937887 -31757867 - MER5A DNA MER1_type -1 188 55 530 281 55 20 chr15 53938184 53938383 -31757371 + MIR SINE MIR 32 237 -25 278 265 108 0 chr15 53938467 53938550 -31757204 - MIR SINE MIR -83 125 34 1785 97 0 83 chr15 53939572 53939861 -31755893 - AluSx SINE Alu -42 270 6 203 228 283 0 chr15 53939918 53940010 -31755744 - L2 LINE L2 -11 3261 3144 2373 55 7 7 chr15 53941450 53941758 -31753996 - AluY SINE Alu -3 308 1 463 113 0 0 chr15 53941799 53941861 -31753893 + AluSc SINE Alu 131 192 -117 549 141 0 0 chr15 53942039 53942117 -31753637 - AluJ/FLAM SINE Alu -233 79 2 225 271 130 24 chr15 53942117 53942324 -31753430 - L1M4 LINE L1 -934 5212 4984 505 239 155 7 chr15 53942355 53942549 -31753205 - L1ME LINE L1 -301 5820 5619 872 274 47 0 chr15 53942570 53942785 -31752969 + MIR SINE MIR 14 238 -24 1546 110 8 182 chr15 53942786 53943036 -31752718 + MER47A DNA MER2_type 1 293 -2030 403 53 0 18 chr15 53943036 53943093 -31752661 + AluSc SINE Alu 243 298 -11 1546 110 8 182 chr15 53943093 53943158 -31752596 + MER47A DNA MER2_type 293 294 -2029 2030 106 3 0 chr15 53943158 53943474 -31752280 - AluSx SINE Alu 0 317 1 1546 110 8 182 chr15 53943474 53943526 -31752228 + MER47A DNA MER2_type 294 353 -13 754 211 19 0 chr15 53943527 53943683 -31752071 - AluJb SINE Alu -16 296 138 244 317 49 28 chr15 53943739 53943881 -31751873 - L1ME LINE L1 -516 5605 5461 1964 141 3 3 chr15 53945630 53945934 -31749820 - AluJb SINE Alu -8 304 1 1748 158 0 43 chr15 53946059 53946381 -31749373 - AluJo SINE Alu 0 312 5 2128 97 3 13 chr15 53947353 53947653 -31748101 + AluSx SINE Alu 1 297 -15 29 0 0 0 chr15 53947788 53947817 -31747937 + AT_rich Low_complexity Low_complexity 1 29 0 323 252 108 22 chr15 53947831 53947970 -31747784 + L2 LINE L2 3163 3313 0 298 378 102 24 chr15 53948302 53948556 -31747198 + L2 LINE L2 2994 3267 -5 713 283 109 39 chr15 53948576 53948887 -31746867 - L3 LINE CR1 -15 1562 1230 520 296 111 5 chr15 53949435 53949624 -31746130 + MIR SINE MIR 36 244 -18 216 0 0 0 chr15 53950375 53950399 -31745355 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1216 131 0 0 chr15 53950422 53950597 -31745157 + AluSg/x SINE Alu 81 255 -55 275 186 0 0 chr15 53950635 53950678 -31745076 - Alu SINE Alu -259 44 2 306 0 0 0 chr15 53951498 53951532 -31744222 + (A)n Simple_repeat Simple_repeat 1 34 0 2064 103 21 0 chr15 53951700 53951990 -31743764 + AluSq SINE Alu 1 296 -17 2142 103 3 0 chr15 53952051 53952341 -31743413 + AluSg SINE Alu 1 291 -19 1773 240 92 34 chr15 53952532 53953273 -31742481 - L2 LINE L2 0 3313 2512 1782 159 7 10 chr15 53953273 53953581 -31742173 + AluJb SINE Alu 5 311 -1 1773 240 92 34 chr15 53953581 53953708 -31742046 - L2 LINE L2 -801 2512 2394 596 262 109 46 chr15 53953724 53954071 -31741683 + L1ME1 LINE L1 5789 6157 -9 2069 115 0 3 chr15 53954084 53954379 -31741375 + AluSq SINE Alu 1 294 -19 302 375 11 17 chr15 53954579 53954755 -31740999 + L2 LINE L2 2671 2845 -469 630 272 83 87 chr15 53954966 53955466 -31740288 + MLT1H LTR MaLR 2 541 -8 540 155 10 29 chr15 53955709 53955812 -31739942 - FLAM_A SINE Alu 0 142 42 * 673 187 0 0 chr15 53955811 53955918 -31739836 - AluJo/FLAM SINE Alu -200 112 6 2091 123 0 3 chr15 53955930 53956238 -31739516 - AluJb SINE Alu -5 307 1 2288 74 7 10 chr15 53956246 53956545 -31739209 - AluY SINE Alu -13 298 1 1307 146 70 90 chr15 53956576 53956702 -31739052 + AluJo SINE Alu 1 128 -184 2184 118 0 0 chr15 53956702 53957008 -31738746 - AluSq SINE Alu -7 306 1 2207 116 0 0 chr15 53957018 53957321 -31738433 - AluSx SINE Alu -9 303 1 1307 146 70 90 chr15 53957321 53957484 -31738270 + AluJo SINE Alu 137 295 -17 1382 115 60 5 chr15 53957539 53957756 -31737998 - AluSp SINE Alu -16 297 69 1610 100 133 41 chr15 53957771 53957898 -31737856 - AluSx SINE Alu -16 296 182 2022 105 14 0 chr15 53957898 53958174 -31737580 - AluSx SINE Alu -16 296 17 2000 97 0 75 chr15 53958176 53958496 -31737258 - AluSg SINE Alu -14 296 1 1610 100 133 41 chr15 53958496 53958636 -31737118 - AluSx SINE Alu -130 182 1 2174 109 7 0 chr15 53960803 53961106 -31734648 + AluSx SINE Alu 1 305 -7 1942 135 23 0 chr15 53961237 53961540 -31734214 + AluSg SINE Alu 1 310 0 1731 152 32 23 chr15 53961557 53961866 -31733888 + AluJo SINE Alu 1 312 0 246 272 48 95 chr15 53962055 53962202 -31733552 - L2 LINE L2 -622 2692 2553 352 331 28 28 chr15 53962250 53962395 -31733359 - MIR SINE MIR -98 164 20 227 358 62 8 chr15 53962435 53962678 -31733076 - L2 LINE L2 -499 2815 2560 200 320 141 55 chr15 53963072 53963456 -31732298 - L2 LINE L2 -1294 2020 1604 415 282 43 0 chr15 53963943 53964060 -31731694 - MIR SINE MIR -13 249 128 2460 57 0 0 chr15 53964472 53964769 -31730985 - AluY SINE Alu -14 297 1 293 261 76 0 chr15 53964813 53964905 -31730849 - MER117 DNA MER1_type -79 118 20 701 291 145 24 chr15 53965127 53965540 -31730214 + L3 LINE CR1 1112 1574 -3 204 67 0 0 chr15 53965696 53965726 -31730028 + (TTTAG)n Simple_repeat Simple_repeat 1 30 0 2018 125 3 0 chr15 53965726 53966007 -31729747 - AluSq SINE Alu -28 285 1 1732 98 8 0 chr15 53967231 53967465 -31728289 - AluSg SINE Alu -12 298 63 488 127 0 0 chr15 53967504 53967575 -31728179 - AluSg SINE Alu -237 72 2 2295 102 0 3 chr15 53967579 53967893 -31727861 - AluSq SINE Alu 0 313 1 295 298 85 0 chr15 53967893 53968034 -31727720 + Charlie8 DNA MER1_type 122 274 -2143 199 306 8 83 chr15 53968121 53968242 -31727512 + L3 LINE CR1 1463 1574 -3 530 300 71 0 chr15 53969337 53969507 -31726247 + MIR SINE MIR 13 194 -68 212 253 61 49 chr15 53969566 53969659 -31726095 + MIR SINE MIR 38 138 -70 206 121 0 0 chr15 53971541 53971574 -31724180 + (CTG)n Simple_repeat Simple_repeat 2 34 0 187 29 0 59 chr15 53972141 53972175 -31723579 + (CCCCCG)n Simple_repeat Simple_repeat 4 35 0 292 308 122 13 chr15 53974862 53975018 -31720736 + MIR3 SINE MIR 35 207 -1 2890 211 16 22 chr15 53975720 53976162 -31719592 + MER90 LTR ERV1 1 440 -135 2171 102 3 0 chr15 53976162 53976456 -31719298 + AluSp SINE Alu 1 295 -18 2890 211 16 22 chr15 53976456 53976592 -31719162 + MER90 LTR ERV1 440 575 0 349 255 165 35 chr15 53976598 53976798 -31718956 - MIR SINE MIR -6 256 31 364 315 67 99 chr15 53977225 53977641 -31718113 + L2 LINE L2 2870 3272 0 1916 133 13 7 chr15 53977848 53978157 -31717597 + AluSx SINE Alu 1 311 -1 210 295 194 39 chr15 53980360 53980489 -31715265 - MIR3 SINE MIR -5 203 55 198 331 229 15 chr15 53982644 53982910 -31712844 - L2 LINE L2 0 3272 2950 225 0 0 0 chr15 53983130 53983155 -31712599 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1831 141 0 14 chr15 53983155 53983439 -31712315 - AluJo SINE Alu -32 280 1 247 368 246 10 chr15 53985702 53986104 -31709650 - L3 LINE CR1 -12 1565 1069 1912 134 36 23 chr15 53986735 53987042 -31708712 - AluSx SINE Alu -1 311 1 236 332 95 51 chr15 53987046 53987299 -31708455 - L2 LINE L2 -1 3271 3008 366 353 70 37 chr15 53987442 53987742 -31708012 - L2 LINE L2 -4 3268 2959 471 231 86 54 chr15 53989099 53989285 -31706469 - MIR3 SINE MIR -14 194 3 1432 67 0 11 chr15 53989982 53990162 -31705592 + AluSx SINE Alu 16 193 -119 197 285 73 40 chr15 53990462 53990613 -31705141 - L2 LINE L2 -208 3064 2909 840 206 13 0 chr15 53990813 53990968 -31704786 - FRAM SINE Alu -19 157 1 2125 186 7 41 chr15 53991231 53991298 -31704456 + MER54A LTR ERVL 497 565 -336 2069 136 0 7 chr15 53991298 53991607 -31704147 - AluSx SINE Alu -5 307 1 2125 186 7 41 chr15 53991607 53991958 -31703796 + MER54A LTR ERVL 565 901 0 1109 212 4 13 chr15 53992145 53992371 -31703383 + MIR SINE MIR 17 240 -22 196 342 40 34 chr15 53997344 53997493 -31698261 + L3b LINE CR1 1249 1398 -185 394 278 99 19 chr15 53997887 53998049 -31697705 + MIR3 SINE MIR 5 179 -29 314 289 35 0 chr15 53999097 53999218 -31696536 + MIR SINE MIR 59 182 -63 220 148 23 34 chr15 54001233 54001321 -31694433 + (TG)n Simple_repeat Simple_repeat 1 87 0 180 77 0 0 chr15 54004509 54004535 -31691219 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1511 124 4 15 chr15 54004738 54005003 -31690751 + L1MD3 LINE L1 7732 7993 -2 703 255 65 0 chr15 54005047 54005231 -31690523 + MIR SINE MIR 13 208 -54 213 272 128 40 chr15 54009415 54009540 -31686214 + MIR3 SINE MIR 44 179 -29 1900 186 0 0 chr15 54060699 54061005 -31634749 + AluJb SINE Alu 2 307 -5 2022 136 19 7 chr15 54061213 54061521 -31634233 + AluSx SINE Alu 1 312 0 322 265 128 29 chr15 54061643 54061949 -31633805 - L1MEd LINE L1 -4862 1257 922 8276 97 14 16 chr15 54062061 54063340 -31632414 - HERVH LTR ERV1 -5727 1986 711 1193 169 73 19 chr15 54064408 54064668 -31631086 - Tigger3(Golem) DNA MER2_type -1 3028 2755 1212 146 16 0 chr15 54064668 54064860 -31630894 - AluSg/x SINE Alu -11 299 105 3272 30 10 0 chr15 54066404 54066808 -31628946 + MER11C LTR ERVK 664 1071 0 4391 154 77 9 chr15 54066808 54067605 -31628149 + HERVK11 LTR ERVK 1 851 -7102 1170 167 105 0 chr15 54067592 54067831 -31627923 + HERVK11 LTR ERVK 1148 1411 -6542 * 324 292 128 18 chr15 54068381 54068662 -31627092 - L1 LINE L1 -2191 3955 3644 311 251 131 73 chr15 54068727 54068880 -31626874 - L1 LINE L1 -2579 3567 3424 2279 77 0 24 chr15 54068880 54069178 -31626576 + AluY SINE Alu 1 291 -20 311 251 131 73 chr15 54069178 54069299 -31626455 - L1 LINE L1 -2722 3424 3277 8723 75 6 0 chr15 54069605 54070779 -31624975 - L1P LINE L1 -4944 1202 22 624 229 36 21 chr15 54070783 54070975 -31624779 + L1M4 LINE L1 3197 3391 -2755 256 179 60 15 chr15 54071466 54071600 -31624154 + (TA)n Simple_repeat Simple_repeat 2 141 0 216 61 20 41 chr15 54071600 54071649 -31624105 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 2025 133 10 7 chr15 54071848 54072142 -31623612 - AluJb SINE Alu -16 296 2 793 127 17 0 chr15 54072498 54072616 -31623138 + FLAM_C SINE Alu 1 120 -13 26 0 0 0 chr15 54073368 54073394 -31622360 + AT_rich Low_complexity Low_complexity 1 26 0 204 125 0 0 chr15 54073556 54073588 -31622166 + (CA)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chr15 54074203 54074236 -31621518 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 236 241 0 0 chr15 54074258 54074316 -31621438 + U13 snRNA snRNA 1 58 -46 1134 110 6 0 chr15 54074316 54074479 -31621275 + THE1B LTR MaLR 1 164 -200 1085 53 0 0 chr15 54074480 54074611 -31621143 - AluY SINE Alu -6 305 175 1713 77 9 5 chr15 54074616 54074838 -31620916 - AluY SINE Alu -83 228 6 1300 153 13 39 chr15 54074861 54075090 -31620664 - AluSg/x SINE Alu -14 296 74 869 130 0 0 chr15 54075106 54075221 -31620533 - AluJb SINE Alu -188 124 10 285 140 18 18 chr15 54075321 54075378 -31620376 - L1M4 LINE L1 -1602 4544 4488 2092 98 42 0 chr15 54075860 54076146 -31619608 + AluSp SINE Alu 1 298 -15 655 260 25 56 chr15 54076147 54076560 -31619194 + L1ME3A LINE L1 5695 5970 -200 866 93 8 31 chr15 54076413 54076542 -31619212 - FLAM_C SINE Alu -7 126 1 282 52 10 240 chr15 54076542 54076593 -31619161 + L1MB3 LINE L1 6121 6182 -1 362 116 29 14 chr15 54076607 54076676 -31619078 + L1MC2 LINE L1 6101 6170 -174 1770 179 7 0 chr15 54076678 54076958 -31618796 + AluSx SINE Alu 1 282 -30 874 239 18 5 chr15 54077067 54077289 -31618465 - L1M4 LINE L1 -1888 4258 4034 861 158 116 0 chr15 54077387 54077533 -31618221 - AluJb SINE Alu -17 295 133 2001 105 0 39 chr15 54077560 54077845 -31617909 - AluSc SINE Alu -35 274 1 202 305 12 0 chr15 54078370 54078452 -31617302 + GA-rich Low_complexity Low_complexity 4 86 0 400 286 42 55 chr15 54079007 54079224 -31616530 - L2 LINE L2 -48 3265 3052 1934 128 10 39 chr15 54079225 54079530 -31616224 + AluJb SINE Alu 1 296 -16 2340 113 7 0 chr15 54079532 54079841 -31615913 + AluSq SINE Alu 1 311 -2 2426 83 0 6 chr15 54079848 54080160 -31615594 + AluY SINE Alu 1 310 -1 26 0 0 0 chr15 54080160 54080186 -31615568 + AT_rich Low_complexity Low_complexity 1 26 0 2368 82 0 0 chr15 54080306 54080588 -31615166 - AluY SINE Alu -29 282 1 209 279 25 38 chr15 54080595 54080674 -31615080 + L2 LINE L2 3187 3264 -49 * 244 348 54 11 chr15 54080663 54080755 -31614999 - MIR SINE MIR -139 123 28 426 330 49 5 chr15 54081082 54081267 -31614487 - MIR SINE MIR -66 196 4 753 162 6 58 chr15 54081849 54082022 -31613732 - MIR SINE MIR -20 242 79 209 279 35 42 chr15 54082071 54082243 -31613511 + L2 LINE L2 2794 2961 -311 221 271 136 14 chr15 54082344 54082484 -31613270 + L2 LINE L2 3116 3272 0 937 215 29 4 chr15 54082830 54083076 -31612678 + L1MEc LINE L1 2230 2481 -3915 2122 106 34 3 chr15 54083086 54083378 -31612376 + AluSp SINE Alu 11 311 -2 191 284 72 80 chr15 54083378 54083642 -31612112 + L2 LINE L2 2701 2962 -352 2295 119 0 0 chr15 54083888 54084190 -31611564 + AluSx SINE Alu 1 302 -10 623 251 40 55 chr15 54084360 54084559 -31611195 - MER63A DNA MER1_type -14 196 1 2234 70 77 3 chr15 54084801 54085087 -31610667 + AluSc SINE Alu 1 307 -2 666 234 30 85 chr15 54085890 54086053 -31609701 + L1MC5 LINE L1 7507 7677 -284 2108 125 0 17 chr15 54086053 54086348 -31609406 + AluSq SINE Alu 5 294 -19 666 234 30 85 chr15 54086348 54086385 -31609369 + L1MC5 LINE L1 7677 7714 -247 2505 83 0 3 chr15 54086385 54086697 -31609057 - AluY SINE Alu 0 311 1 629 198 48 0 chr15 54086697 54086823 -31608931 - FLAM_A SINE Alu -1 132 1 666 234 30 85 chr15 54086823 54087021 -31608733 + L1MC5 LINE L1 7712 7885 -76 353 185 31 0 chr15 54087023 54087088 -31608666 - AluJ/FRAM SINE Alu -6 296 230 234 179 0 0 chr15 54087087 54087126 -31608628 - Alu SINE Alu -281 39 1 * 516 45 0 0 chr15 54087133 54087200 -31608554 - AluY SINE Alu -9 302 236 205 239 0 0 chr15 54087546 54087592 -31608162 + (CGGG)n Simple_repeat Simple_repeat 3 48 0 255 177 0 65 chr15 54088228 54088290 -31607464 - MIR SINE MIR -107 155 98 241 302 23 12 chr15 54088352 54088438 -31607316 - MIR3 SINE MIR -41 167 81 1115 72 0 14 chr15 54089330 54089468 -31606286 + AluSq/x SINE Alu 1 136 -177 1906 62 9 0 chr15 54089468 54089694 -31606060 + AluY SINE Alu 1 228 -83 2012 130 36 3 chr15 54089843 54090144 -31605610 - AluSq SINE Alu -2 311 1 506 238 125 6 chr15 54090249 54090409 -31605345 - MIR SINE MIR -16 246 68 2228 87 52 0 chr15 54091152 54091438 -31604316 - AluSp SINE Alu -12 301 1 28 48 0 0 chr15 54091648 54091690 -31604064 + AT_rich Low_complexity Low_complexity 1 42 0 1110 170 0 63 chr15 54091700 54091923 -31603831 + AluJo SINE Alu 12 220 -92 313 62 0 21 chr15 54091923 54091971 -31603783 + AluSg/x SINE Alu 84 130 -170 314 270 75 17 chr15 54092783 54092929 -31602825 - MIR SINE MIR -56 206 54 2345 84 10 0 chr15 54096433 54096729 -31599025 + AluSc SINE Alu 1 299 -10 192 234 0 0 chr15 54098356 54098403 -31597351 + GA-rich Low_complexity Low_complexity 3 49 0 390 247 133 57 chr15 54100585 54100743 -31595011 - MIR3 SINE MIR -20 188 19 844 126 0 15 chr15 54101532 54101667 -31594087 - FLAM_C SINE Alu 0 133 1 489 269 131 7 chr15 54101917 54102062 -31593692 - MIR SINE MIR -5 257 95 257 253 33 66 chr15 54102096 54102187 -31593567 - MIR SINE MIR -155 107 20 198 121 0 0 chr15 54102450 54102483 -31593271 + L2 LINE L2 3240 3272 0 377 314 24 0 chr15 54102824 54102989 -31592765 + MIR SINE MIR 46 218 -44 207 194 0 0 chr15 54103258 54103294 -31592460 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 996 218 39 13 chr15 54103631 54103860 -31591894 - MIR SINE MIR 0 262 28 38 61 0 0 chr15 54104592 54104658 -31591096 + GC_rich Low_complexity Low_complexity 1 66 0 396 340 78 21 chr15 54106188 54106520 -31589234 + L2 LINE L2 2826 3176 -96 1709 102 0 43 chr15 54108818 54109073 -31586681 - AluSc SINE Alu -13 296 53 577 136 0 0 chr15 54109073 54109154 -31586600 - AluSc SINE Alu -223 86 6 231 36 0 0 chr15 54109762 54109790 -31585964 + (CCCCAG)n Simple_repeat Simple_repeat 1 28 0 207 312 71 14 chr15 54110723 54110864 -31584890 + L2 LINE L2 2964 3112 -160 1770 159 27 0 chr15 54112488 54112783 -31582971 - AluSx SINE Alu -9 303 1 2351 86 0 3 chr15 54113152 54113465 -31582289 - AluSx SINE Alu 0 312 1 700 290 0 11 chr15 54113796 54113982 -31581772 + MIR SINE MIR 79 262 0 242 179 75 0 chr15 54114112 54114246 -31581508 + (TA)n Simple_repeat Simple_repeat 1 144 0 373 182 20 50 chr15 54114254 54114336 -31581418 - L1MCa LINE L1 -4352 2074 1994 2233 98 0 0 chr15 54114336 54114632 -31581122 - AluSg SINE Alu -14 296 1 373 182 20 50 chr15 54114632 54114648 -31581106 - L1MCa LINE L1 -4432 1994 1979 1300 193 117 0 chr15 54114801 54115101 -31580653 - L1M4 LINE L1 -1120 5026 4692 2057 114 3 7 chr15 54115373 54115672 -31580082 - AluSx SINE Alu -14 298 1 246 214 38 38 chr15 54115685 54115747 -31580007 - L1M LINE L1 -2413 5395 5334 2098 125 7 0 chr15 54115747 54116051 -31579703 - AluSx SINE Alu -6 306 1 246 214 38 38 chr15 54116051 54116119 -31579635 - L1M LINE L1 -2473 5335 5265 414 324 72 24 chr15 54116130 54116337 -31579417 - L1M4 LINE L1 -896 5250 5034 422 237 0 44 chr15 54116443 54116557 -31579197 + L1ME LINE L1 20 128 -5942 1374 260 37 17 chr15 54117108 54117587 -31578167 + MLT1H LTR MaLR 23 548 -1 22 0 0 0 chr15 54117642 54117664 -31578090 + AT_rich Low_complexity Low_complexity 1 22 0 196 265 0 60 chr15 54117741 54117817 -31577937 + L2 LINE L2 3234 3306 -7 1171 173 138 74 chr15 54117817 54118100 -31577654 + AluJo SINE Alu 2 302 0 1926 114 54 0 chr15 54119223 54119503 -31576251 - AluSq SINE Alu -18 295 1 2097 129 0 7 chr15 54119574 54119883 -31575871 - AluJo SINE Alu 0 312 6 1660 174 3 23 chr15 54120471 54120775 -31574979 - AluJo SINE Alu -14 298 1 719 139 0 66 chr15 54120846 54120983 -31574771 - L1MB7 LINE L1 -15 6169 6042 1884 154 0 0 chr15 54121006 54121305 -31574449 + AluJb SINE Alu 1 299 -13 2016 159 110 6 chr15 54121307 54121436 -31574318 + L1MB3 LINE L1 5284 5398 -786 2005 107 65 0 chr15 54121436 54121727 -31574027 + AluSg SINE Alu 1 310 0 2016 159 110 6 chr15 54121727 54122088 -31573666 + L1MB3 LINE L1 5398 6008 -176 * 2100 142 11 58 chr15 54122087 54122228 -31573526 - L1MA2 LINE L1 -339 5965 5819 2112 125 3 0 chr15 54122228 54122531 -31573223 - AluSx SINE Alu -8 304 1 2100 142 11 58 chr15 54122531 54122858 -31572896 - L1MA2 LINE L1 -485 5819 5478 1640 161 6 43 chr15 54122858 54123039 -31572715 - AluJo SINE Alu -1 311 146 2153 105 0 0 chr15 54123039 54123333 -31572421 - AluSx SINE Alu -18 294 1 1640 161 6 43 chr15 54123333 54123474 -31572280 - AluJo SINE Alu -166 146 1 2100 142 11 58 chr15 54123474 54123982 -31571772 - L1MA2 LINE L1 -826 5478 4980 419 253 0 0 chr15 54124130 54124225 -31571529 + MER94 DNA DNA 40 134 0 184 286 0 0 chr15 54124237 54124279 -31571475 + MIR SINE MIR 42 83 -125 1193 126 0 0 chr15 54124319 54124486 -31571268 - AluSg/x SINE Alu -15 295 129 319 297 0 0 chr15 54124486 54124560 -31571194 + MER5B DNA MER1_type 39 112 -66 670 194 62 0 chr15 54124571 54124700 -31571054 + L1MCa LINE L1 533 669 -5757 * 1026 130 28 37 chr15 54124698 54124913 -31570841 + L1MCa LINE L1 2048 2260 -4166 319 179 0 0 chr15 54125013 54125069 -31570685 + L1MB3 LINE L1 6088 6143 -40 2000 128 7 3 chr15 54125070 54125367 -31570387 + AluSx SINE Alu 1 298 -14 676 111 0 3 chr15 54125371 54125606 -31570148 + AluSx SINE Alu 1 293 -16 2017 100 14 0 chr15 54125617 54125917 -31569837 + AluSx SINE Alu 2 305 0 2220 90 0 19 chr15 54125924 54126235 -31569519 + AluSg SINE Alu 5 309 -1 307 234 0 26 chr15 54126237 54126314 -31569440 - L2 LINE L2 -299 2973 2899 218 318 140 11 chr15 54126360 54126463 -31569291 - MIR SINE MIR -68 140 34 314 98 0 0 chr15 54127353 54127394 -31568360 + Alu SINE Alu 21 61 -247 322 65 0 22 chr15 54127560 54127606 -31568148 - L1PA2 LINE L1 -10 6145 6101 1910 111 0 40 chr15 54128236 54128558 -31567196 + AluSx SINE Alu 1 310 0 262 289 62 10 chr15 54128560 54128657 -31567097 - L3 LINE CR1 -73 1504 1403 283 308 121 15 chr15 54128939 54129137 -31566617 - MIR SINE MIR -20 242 24 2214 94 3 3 chr15 54130256 54130554 -31565200 - AluSx SINE Alu -14 298 1 248 261 0 14 chr15 54130707 54130776 -31564978 - LTR67 LTR ERVL -1 556 489 2140 108 0 3 chr15 54131234 54131529 -31564225 + AluSc SINE Alu 1 294 -15 2076 129 3 6 chr15 54131538 54131849 -31563905 + AluSx SINE Alu 3 312 0 268 172 226 21 chr15 54132048 54132141 -31563613 - L2 LINE L2 -4 3268 3157 229 250 0 0 chr15 54132810 54132862 -31562892 + L2 LINE L2 3262 3313 0 509 268 57 46 chr15 54133026 54133220 -31562534 - MIR SINE MIR -19 243 48 304 258 62 21 chr15 54133310 54133407 -31562347 + MIR SINE MIR 106 206 -56 631 169 8 17 chr15 54133414 54133532 -31562222 + FLAM_A SINE Alu 13 129 -13 1843 107 3 77 chr15 54133533 54133860 -31561894 + AluSx SINE Alu 1 303 -9 248 348 110 46 chr15 54134131 54134413 -31561341 + L2 LINE L2 2664 2963 -351 202 154 250 0 chr15 54134952 54135004 -31560750 + MIR SINE MIR 198 262 0 231 200 0 0 chr15 54135015 54135060 -31560694 + L2 LINE L2 3216 3260 -12 330 208 96 32 chr15 54135149 54135241 -31560513 - MIR3 SINE MIR -35 173 70 2299 77 7 0 chr15 54135241 54135538 -31560216 + AluSg SINE Alu 1 299 -11 330 208 96 32 chr15 54135538 54135570 -31560184 - MIR3 SINE MIR -138 70 41 625 282 180 45 chr15 54136860 54137178 -31558576 + L2 LINE L2 2316 2589 -725 1379 156 53 53 chr15 54137178 54137480 -31558274 - AluJo SINE Alu -10 302 1 625 282 180 45 chr15 54137480 54137743 -31558011 + L2 LINE L2 2589 2976 -338 1713 167 10 0 chr15 54137763 54138062 -31557692 + AluSx SINE Alu 5 306 -6 1940 164 59 23 chr15 54138064 54138459 -31557295 - MER83 LTR ERV1 -34 400 1 183 147 0 29 chr15 54138459 54138488 -31557266 + L2 LINE L2 3267 3295 -14 269 0 56 0 chr15 54138488 54138524 -31557230 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 354 235 7 40 chr15 54138601 54138750 -31557004 + C-rich Low_complexity Low_complexity 6 149 0 2127 105 0 0 chr15 54139337 54139623 -31556131 + AluY SINE Alu 1 286 -25 26 0 0 0 chr15 54139630 54139656 -31556098 + AT_rich Low_complexity Low_complexity 1 26 0 187 315 42 56 chr15 54139679 54139822 -31555932 + L2 LINE L2 2965 3105 -167 1711 164 7 13 chr15 54140172 54140336 -31555418 - AluJb SINE Alu -15 297 134 2225 100 0 7 chr15 54140336 54140635 -31555119 - AluSx SINE Alu -15 297 1 1711 164 7 13 chr15 54140635 54140769 -31554985 - AluJb SINE Alu -178 134 1 411 21 0 0 chr15 54140799 54140847 -31554907 + (TG)n Simple_repeat Simple_repeat 1 48 0 1113 93 0 0 chr15 54140848 54140998 -31554756 - AluSg/x SINE Alu -2 308 159 1956 144 3 0 chr15 54141105 54141403 -31554351 - AluSx SINE Alu -13 299 1 2233 100 0 28 chr15 54141407 54141726 -31554028 - AluSx SINE Alu -2 310 1 2395 80 0 10 chr15 54141767 54142081 -31553673 - AluY SINE Alu 0 311 1 357 328 16 8 chr15 54142179 54142301 -31553453 - L1ME LINE L1 -361 5760 5638 180 0 0 0 chr15 54142498 54142518 -31553236 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2071 101 0 0 chr15 54142529 54142805 -31552949 - AluSx SINE Alu -36 276 1 1960 116 9 28 chr15 54142813 54142991 -31552763 - AluSx SINE Alu 0 312 141 2130 107 7 0 chr15 54142991 54143291 -31552463 - AluSx SINE Alu -10 302 1 1960 116 9 28 chr15 54143291 54143430 -31552324 - AluSx SINE Alu -171 141 1 338 69 0 69 chr15 54143430 54143488 -31552266 - AluSg/x SINE Alu -167 133 80 972 156 22 71 chr15 54143490 54143715 -31552039 - AluJo SINE Alu -98 214 1 1290 95 0 0 chr15 54143912 54144081 -31551673 + AluSg/x SINE Alu 132 300 -12 2229 76 20 3 chr15 54144591 54144894 -31550860 + AluY SINE Alu 1 308 -3 236 261 14 14 chr15 54144967 54145036 -31550718 - L2 LINE L2 -2 3270 3202 520 228 94 7 chr15 54145066 54145215 -31550539 + MIR SINE MIR 31 192 -70 732 235 80 0 chr15 54145225 54145412 -31550342 - MER105 DNA DNA 0 204 3 199 100 0 0 chr15 54146722 54146752 -31549002 + MIR SINE MIR 121 150 -58 1848 171 0 7 chr15 54146806 54147115 -31548639 + AluJo SINE Alu 5 311 -1 2206 119 3 0 chr15 54147123 54147434 -31548320 + AluSx SINE Alu 1 312 0 2246 95 3 0 chr15 54147958 54148262 -31547492 - AluSp SINE Alu -8 305 1 2066 125 3 6 chr15 54148381 54148693 -31547061 - AluSx SINE Alu -1 311 1 775 192 28 28 chr15 54148730 54148912 -31546842 + L1MC2 LINE L1 6162 6343 -1 545 211 111 100 chr15 54148930 54149151 -31546603 + L1ME3A LINE L1 5894 6120 -50 2000 131 0 25 chr15 54149151 54149465 -31546289 - AluSx SINE Alu -6 306 1 545 211 111 100 chr15 54149465 54149504 -31546250 + L1ME3A LINE L1 6120 6157 -13 353 286 0 0 chr15 54149583 54149674 -31546080 + MLT1F1 LTR MaLR 35 125 -442 2388 153 14 7 chr15 54149674 54150099 -31545655 + L1MC3 LINE L1 7189 7616 -169 1789 133 3 57 chr15 54150383 54150700 -31545054 + AluJo SINE Alu 2 301 -11 1208 55 12 18 chr15 54150890 54151054 -31544700 - L1MA1 LINE L1 0 6302 6140 2287 91 0 0 chr15 54151063 54151359 -31544395 - AluSx SINE Alu -16 296 1 397 274 40 77 chr15 54151371 54151670 -31544084 - L1MC4 LINE L1 -141 7901 7614 181 293 35 0 chr15 54152398 54152456 -31543298 + MIR3 SINE MIR 112 171 -37 186 225 0 0 chr15 54152886 54152926 -31542828 + L3 LINE CR1 1535 1574 -3 271 175 12 62 chr15 54154051 54154131 -31541623 + MIR SINE MIR 65 140 -68 297 320 10 10 chr15 54154811 54154914 -31540840 + MIR SINE MIR 44 146 -62 267 280 217 45 chr15 54155279 54155436 -31540318 - L2 LINE L2 -1 3271 3088 216 0 0 0 chr15 54156242 54156266 -31539488 + (T)n Simple_repeat Simple_repeat 1 24 0 2265 99 7 16 chr15 54156819 54157122 -31538632 + AluSx SINE Alu 1 300 -12 186 278 0 56 chr15 54157190 54157244 -31538510 - MER5A DNA MER1_type -137 52 2 307 186 18 133 chr15 54157256 54157369 -31538385 + MER94 DNA DNA 1 100 -34 773 175 0 24 chr15 54157448 54157574 -31538180 - FLAM_C SINE Alu -10 123 1 1479 150 68 59 chr15 54157693 54158000 -31537754 + AluJb SINE Alu 1 310 -2 760 153 34 0 chr15 54158573 54158691 -31537063 + AluJo SINE Alu 21 142 -170 263 122 0 0 chr15 54158691 54158740 -31537014 + Alu SINE Alu 253 301 -1 1684 129 30 99 chr15 54158772 54158816 -31536938 - L1MB8 LINE L1 -5 6173 6127 2089 156 0 0 chr15 54158816 54159118 -31536636 - AluSx SINE Alu -10 302 1 1684 129 30 99 chr15 54159118 54159184 -31536570 - L1MB8 LINE L1 -51 6127 6058 2373 96 0 3 chr15 54159184 54159486 -31536268 - AluSc SINE Alu -8 301 1 2226 116 3 7 chr15 54159486 54159789 -31535965 - AluSx SINE Alu -10 302 1 1684 129 30 99 chr15 54159789 54160048 -31535706 - L1MB8 LINE L1 -118 6060 5828 524 129 0 81 chr15 54160357 54160391 -31535363 + L1M4 LINE L1 5169 5204 -942 1868 125 0 116 chr15 54160391 54160728 -31535026 + AluSx SINE Alu 1 298 -14 524 129 0 81 chr15 54160728 54160817 -31534937 + L1M4 LINE L1 5204 5282 -864 1751 102 4 0 chr15 54160817 54161042 -31534712 + AluSq SINE Alu 1 226 -87 1505 143 69 0 chr15 54161040 54161271 -31534483 - AluJb SINE Alu -38 274 28 * 336 77 17 23 chr15 54161384 54161453 -31534301 + AluSp/q SINE Alu 244 299 -4 390 146 12 12 chr15 54161454 54161536 -31534218 + L1M4 LINE L1 5195 5276 -870 2208 106 7 0 chr15 54161542 54161834 -31533920 + AluSx SINE Alu 1 294 -18 2201 90 14 3 chr15 54161834 54162122 -31533632 + AluSg SINE Alu 1 291 -19 1462 122 0 0 chr15 54162122 54162327 -31533427 + AluSq SINE Alu 109 313 0 359 284 29 0 chr15 54162651 54162753 -31533001 - MIR SINE MIR -49 213 109 702 134 7 49 chr15 54163374 54163516 -31532238 - FRAM SINE Alu -1 175 40 2214 63 49 7 chr15 54163548 54163834 -31531920 - AluY SINE Alu -13 298 1 2122 121 0 14 chr15 54164406 54164566 -31531188 - AluSx SINE Alu -19 293 137 2570 51 0 0 chr15 54164566 54164860 -31530894 - AluY SINE Alu -17 294 1 2122 121 0 14 chr15 54164860 54164996 -31530758 - AluSx SINE Alu -175 137 1 453 256 124 0 chr15 54165687 54165824 -31529930 + MIR SINE MIR 57 210 -52 414 0 0 0 chr15 54165845 54165891 -31529863 + (CA)n Simple_repeat Simple_repeat 2 47 0 182 256 0 23 chr15 54166918 54166961 -31528793 + MIR SINE MIR 112 153 -55 2028 39 0 4 chr15 54167665 54167898 -31527856 - AluY SINE Alu -78 233 2 1116 60 0 8 chr15 54167898 54168032 -31527722 - AluY SINE Alu -177 134 2 192 194 0 0 chr15 54168361 54168392 -31527362 - L2 LINE L2 -616 2698 2668 418 309 64 27 chr15 54168432 54168652 -31527102 + L2 LINE L2 2560 2787 -527 11313 23 1 130 chr15 54168656 54170246 -31525508 + SVA Other Other 1 1386 0 204 260 52 52 chr15 54170370 54170447 -31525307 + L2 LINE L2 3005 3081 -191 227 336 135 0 chr15 54171141 54171245 -31524509 - MIR SINE MIR -61 147 30 493 197 123 25 chr15 54172195 54172317 -31523437 - MER94 DNA DNA 0 134 1 348 290 19 0 chr15 54172346 54172453 -31523301 + MLT1K LTR MaLR 25 133 -455 1804 98 33 51 chr15 54172500 54172774 -31522980 - AluSq SINE Alu -44 269 1 605 258 72 54 chr15 54172779 54173000 -31522754 + MLT1K LTR MaLR 255 479 -109 269 245 0 20 chr15 54173050 54173148 -31522606 + CT-rich Low_complexity Low_complexity 3 98 0 734 295 113 3 chr15 54173579 54173881 -31521873 - LTR33 LTR ERVL -182 339 5 194 229 21 0 chr15 54173885 54173933 -31521821 + L2 LINE L2 2924 2972 -342 567 212 41 20 chr15 54173980 54174126 -31521628 - L1PB4 LINE L1 0 6156 6008 2126 92 57 0 chr15 54174206 54174489 -31521265 - AluSq SINE Alu -12 301 3 2015 149 73 3 chr15 54174495 54174865 -31520889 + MSTB LTR MaLR 3 398 -28 683 272 87 28 chr15 54174866 54175120 -31520634 + L2 LINE L2 3045 3313 0 444 191 0 38 chr15 54176063 54176273 -31519481 + MLT1A2 LTR MaLR 6 253 -175 2091 129 0 11 chr15 54176301 54176611 -31519143 - AluSx SINE Alu 0 307 1 244 182 0 0 chr15 54176612 54176656 -31519098 + MLT1A2 LTR MaLR 353 396 0 735 315 10 0 chr15 54176872 54177072 -31518682 + MLT1L LTR MaLR 88 289 -326 6634 116 20 39 chr15 54177074 54177250 -31518504 + L1MA3 LINE L1 4935 5113 -1192 807 163 0 15 chr15 54177250 54177385 -31518369 - FLAM_C SINE Alu 0 133 1 6634 116 20 39 chr15 54177385 54178131 -31517623 + L1MA3 LINE L1 5113 5872 -433 2525 57 0 0 chr15 54178131 54178430 -31517324 + AluY SINE Alu 1 299 -12 6634 116 20 39 chr15 54178430 54178714 -31517040 + L1MA3 LINE L1 5872 6108 -197 2343 105 79 15 chr15 54178714 54179056 -31516698 - THE1B LTR MaLR 0 364 1 6634 116 20 39 chr15 54179056 54179251 -31516503 + L1MA3 LINE L1 6108 6305 0 2040 151 7 0 chr15 54179260 54179559 -31516195 + AluSx SINE Alu 1 301 -11 2383 74 0 3 chr15 54179561 54179874 -31515880 + AluY SINE Alu 1 312 0 336 315 21 21 chr15 54179949 54180092 -31515662 + MLT1L LTR MaLR 327 469 -146 * 723 203 75 15 chr15 54180085 54180469 -31515285 - LTR33 LTR ERVL -8 513 59 228 264 233 39 chr15 54180521 54180650 -31515104 + L2 LINE L2 3150 3303 -10 228 213 21 0 chr15 54180633 54180680 -31515074 - L2 LINE L2 -10 3303 3256 1811 171 16 3 chr15 54180691 54180996 -31514758 + AluJb SINE Alu 1 309 -3 280 358 134 17 chr15 54181295 54181594 -31514160 - L2 LINE L2 -344 2970 2637 1909 179 0 7 chr15 54181631 54181933 -31513821 + AluJb SINE Alu 1 300 -12 379 304 0 18 chr15 54181934 54182046 -31513708 + MIR SINE MIR 153 262 0 1659 141 22 85 chr15 54182172 54182379 -31513375 + MER2 DNA MER2_type 6 182 -163 2342 100 3 0 chr15 54182379 54182679 -31513075 + AluSp SINE Alu 1 301 -12 1659 141 22 85 chr15 54182679 54182834 -31512920 + MER2 DNA MER2_type 182 345 0 239 333 137 27 chr15 54182838 54183138 -31512616 - L2 LINE L2 -34 3238 2906 2128 125 0 0 chr15 54183313 54183593 -31512161 + AluSx SINE Alu 1 280 -32 653 45 23 0 chr15 54183593 54183681 -31512073 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 209 325 0 48 chr15 54183893 54183976 -31511778 + L3 LINE CR1 1398 1476 -101 263 349 75 0 chr15 54184053 54184159 -31511595 + MIR SINE MIR 30 143 -65 270 0 0 0 chr15 54184342 54184372 -31511382 + (A)n Simple_repeat Simple_repeat 1 30 0 2388 89 3 0 chr15 54184376 54184679 -31511075 + AluY SINE Alu 1 304 -7 2091 132 10 0 chr15 54184902 54185205 -31510549 + AluSq SINE Alu 5 310 -3 207 0 0 0 chr15 54185205 54185228 -31510526 + (TA)n Simple_repeat Simple_repeat 1 23 0 1068 186 28 98 chr15 54185305 54185480 -31510274 + AluJb SINE Alu 1 150 -162 2376 86 0 0 chr15 54185480 54185797 -31509957 + AluSc SINE Alu 1 309 0 1068 186 28 98 chr15 54185797 54185906 -31509848 + AluJb SINE Alu 150 265 -47 1597 90 0 28 chr15 54185919 54186131 -31509623 + AluSg/x SINE Alu 83 288 -24 307 153 0 68 chr15 54186132 54186191 -31509563 + L1MC4 LINE L1 6648 6702 -1340 22 56 0 0 chr15 54186194 54186230 -31509524 + AT_rich Low_complexity Low_complexity 1 36 0 461 308 67 12 chr15 54186407 54186647 -31509107 + Charlie7 DNA MER1_type 1 253 -2359 676 67 29 19 chr15 54186675 54186780 -31508974 - L1MB3 LINE L1 -1 6182 6077 547 224 125 50 chr15 54186786 54187067 -31508687 + Charlie7 DNA MER1_type 359 660 -1952 483 190 0 0 chr15 54187079 54187158 -31508596 + MER58A DNA MER1_type 7 85 -22 1393 99 0 2 chr15 54187212 54187476 -31508278 + AluSx SINE Alu 2 310 0 416 236 120 66 chr15 54187622 54187864 -31507890 - L1ME4a LINE L1 -154 5967 5713 181 366 112 25 chr15 54187963 54188124 -31507630 + L2 LINE L2 3098 3272 0 33 0 0 0 chr15 54188133 54188166 -31507588 + AT_rich Low_complexity Low_complexity 1 33 0 2323 83 0 22 chr15 54188719 54189056 -31506698 + AluSx SINE Alu 1 312 0 1127 148 111 23 chr15 54189147 54189363 -31506391 + MER46A DNA MER2_type 1 235 -1 189 321 0 0 chr15 54189745 54189798 -31505956 - L2 LINE L2 0 3272 3220 2159 121 0 7 chr15 54190744 54191041 -31504713 - AluSq SINE Alu -18 295 1 2092 144 6 3 chr15 54191501 54191813 -31503941 - AluSq SINE Alu 0 313 1 6941 156 93 97 chr15 54192130 54193540 -31502214 + L1MC3 LINE L1 5715 7207 -578 256 315 11 0 chr15 54193540 54193629 -31502125 + MLT1F1 LTR MaLR 35 124 -443 6941 156 93 97 chr15 54193629 54194119 -31501635 + L1MC3 LINE L1 7207 7697 -88 1371 173 0 0 chr15 54194235 54194490 -31501264 + AluJo SINE Alu 86 340 0 2030 140 0 10 chr15 54194678 54194813 -31500941 + AluSx SINE Alu 1 136 -176 2159 66 102 0 chr15 54194813 54195087 -31500667 + AluSp SINE Alu 1 302 -11 2030 140 0 10 chr15 54195087 54195251 -31500503 + AluSx SINE Alu 136 297 -15 1682 171 6 48 chr15 54195567 54195883 -31499871 - AluJb SINE Alu -9 303 1 262 105 0 0 chr15 54196102 54196140 -31499614 - tRNA-Gly-GGA tRNA tRNA -37 38 1 2234 118 16 0 chr15 54196148 54196454 -31499300 - AluSx SINE Alu -1 311 1 881 182 0 0 chr15 54196756 54196888 -31498866 - FLAM_A SINE Alu 0 133 2 2754 13 0 26 chr15 54197704 54198013 -31497741 + AluYa5 SINE Alu 1 301 -10 2026 143 7 3 chr15 54198256 54198549 -31497205 + AluSx SINE Alu 1 294 -18 376 330 142 61 chr15 54198814 54199276 -31496478 - L2 LINE L2 -557 2757 2334 2417 79 7 13 chr15 54199276 54199579 -31496175 + AluY SINE Alu 1 301 -10 376 330 142 61 chr15 54199579 54199821 -31495933 - L2 LINE L2 -980 2334 2113 1796 177 3 16 chr15 54199821 54200126 -31495628 - AluJo SINE Alu -7 305 5 376 330 142 61 chr15 54200126 54200410 -31495344 - L2 LINE L2 -1201 2113 1687 962 135 0 0 chr15 54200455 54200588 -31495166 + AluSq/x SINE Alu 1 133 -180 25 31 0 0 chr15 54200995 54201027 -31494727 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr15 54201037 54201072 -31494682 + AT_rich Low_complexity Low_complexity 1 35 0 230 79 0 26 chr15 54201257 54201295 -31494459 + (TAA)n Simple_repeat Simple_repeat 3 39 0 448 65 0 0 chr15 54201306 54201368 -31494386 - AluSp/q SINE Alu -13 300 239 2064 63 0 4 chr15 54201368 54201621 -31494133 + AluY SINE Alu 48 299 -12 2066 237 127 4 chr15 54201646 54202396 -31493358 + L1MC4 LINE L1 2650 3491 -2655 * 5842 143 29 26 chr15 54202393 54202786 -31492968 + L1MC1 LINE L1 5184 5574 -759 2446 88 3 0 chr15 54202786 54203082 -31492672 - AluSg SINE Alu -13 297 1 1891 119 29 52 chr15 54203082 54203392 -31492362 - AluSx SINE Alu -9 303 1 5842 143 29 26 chr15 54203392 54204139 -31491615 + L1MC1 LINE L1 5573 6330 -3 4742 229 49 51 chr15 54204150 54204330 -31491424 + L1MC4 LINE L1 3479 3658 -2584 2337 116 0 0 chr15 54204330 54204631 -31491123 + AluSx SINE Alu 1 301 -11 2244 114 3 19 chr15 54204631 54204946 -31490808 + AluSx SINE Alu 1 310 -2 4742 229 49 51 chr15 54204946 54205362 -31490392 + L1MC4 LINE L1 3657 4072 -2170 1656 192 0 22 chr15 54205362 54205679 -31490075 + AluJo SINE Alu 3 312 0 4742 229 49 51 chr15 54205679 54205703 -31490051 + L1MC4 LINE L1 4072 4095 -2147 2421 89 3 0 chr15 54205703 54206006 -31489748 + AluY SINE Alu 1 304 -7 4742 229 49 51 chr15 54206006 54206885 -31488869 + L1MC4 LINE L1 4095 4892 -1350 2260 91 3 0 chr15 54206885 54207171 -31488583 - AluSg1 SINE Alu -22 287 1 4742 229 49 51 chr15 54207171 54207878 -31487876 + L1MC4 LINE L1 4892 5598 -644 1203 137 23 0 chr15 54207878 54208053 -31487701 + AluSg/x SINE Alu 116 294 -16 2536 78 0 0 chr15 54208058 54208367 -31487387 + AluY SINE Alu 1 309 -2 967 159 99 61 chr15 54208367 54208462 -31487292 + L1MC4 LINE L1 5599 5689 -553 2409 89 3 0 chr15 54208462 54208764 -31486990 + AluSp SINE Alu 1 303 -10 967 159 99 61 chr15 54208764 54208974 -31486780 + L1MC4 LINE L1 5689 5794 -448 1990 100 0 22 chr15 54208974 54209245 -31486509 + AluSq SINE Alu 1 265 -48 1259 139 40 0 chr15 54209250 54209451 -31486303 + L1MD1 LINE L1 6034 6242 0 408 221 174 12 chr15 54209453 54209625 -31486129 + L1M4 LINE L1 3846 4045 -2101 888 193 7 0 chr15 54209625 54209775 -31485979 + FRAM SINE Alu 1 145 -31 201 94 0 0 chr15 54209793 54209825 -31485929 + (T)n Simple_repeat Simple_repeat 1 32 0 643 157 0 20 chr15 54209825 54209927 -31485827 - AluJo/FRAM SINE Alu -80 232 133 1389 178 143 0 chr15 54209928 54210186 -31485568 - AluJb SINE Alu -6 296 2 189 0 0 0 chr15 54210200 54210221 -31485533 + (A)n Simple_repeat Simple_repeat 1 21 0 808 176 98 88 chr15 54210241 54210547 -31485207 + L1M4 LINE L1 4060 4368 -1778 408 115 0 0 chr15 54210551 54210603 -31485151 + Alu SINE Alu 2 53 -257 330 280 179 60 chr15 54210627 54210834 -31484920 + L2 LINE L2 2958 3139 -174 1809 170 0 27 chr15 54210834 54211134 -31484620 + AluJo SINE Alu 1 292 -20 180 0 0 0 chr15 54211138 54211158 -31484596 + (TAGA)n Simple_repeat Simple_repeat 4 23 0 330 280 179 60 chr15 54211158 54211263 -31484491 + L2 LINE L2 3141 3313 0 2055 143 0 7 chr15 54211632 54211766 -31483988 + AluSq SINE Alu 1 134 -179 2265 106 0 3 chr15 54211766 54212059 -31483695 + AluSg SINE Alu 1 292 -18 2055 143 0 7 chr15 54212059 54212217 -31483537 + AluSq SINE Alu 134 291 -22 1993 137 21 0 chr15 54212224 54212509 -31483245 + AluSq SINE Alu 1 291 -22 362 140 0 0 chr15 54212558 54212615 -31483139 + AluS SINE Alu 1 57 -246 1103 136 12 0 chr15 54212615 54212784 -31482970 + AluSg/x SINE Alu 141 311 -1 830 173 0 0 chr15 54212792 54212925 -31482829 + FLAM_C SINE Alu 1 133 0 2020 123 13 36 chr15 54213086 54213395 -31482359 - AluSx SINE Alu -10 302 1 1661 241 86 57 chr15 54214061 54214345 -31481409 - L1ME3 LINE L1 -1 6161 5887 2272 119 0 3 chr15 54214345 54214647 -31481107 + AluSx SINE Alu 1 301 -11 1661 241 86 57 chr15 54214647 54215060 -31480694 - L1ME3 LINE L1 -275 5887 5444 2559 62 0 0 chr15 54215240 54215545 -31480209 - AluY SINE Alu -6 305 1 682 144 27 9 chr15 54216392 54216503 -31479251 + FLAM_C SINE Alu 7 119 -24 800 191 0 7 chr15 54216644 54216785 -31478969 + AluJo SINE Alu 11 150 -162 717 109 0 0 chr15 54216785 54216886 -31478868 + AluSg/x SINE Alu 207 307 -2 311 336 40 20 chr15 54216904 54217053 -31478701 + MIR SINE MIR 51 202 -60 536 181 105 133 chr15 54217432 54217541 -31478213 + MER58A DNA MER1_type 4 106 -2314 2349 57 7 20 chr15 54217541 54217840 -31477914 - AluY SINE Alu -16 295 1 536 181 105 133 chr15 54217840 54217940 -31477814 + MER58A DNA MER1_type 106 207 -17 308 151 27 14 chr15 54217948 54218021 -31477733 + Charlie2 DNA MER1_type 2502 2575 -287 1323 252 61 5 chr15 54218024 54218453 -31477301 + L1M4 LINE L1 3416 3868 -2278 305 214 50 121 chr15 54218537 54218719 -31477035 + Charlie2 DNA MER1_type 2694 2862 0 412 322 126 69 chr15 54218837 54219423 -31476331 - L3 LINE CR1 -489 1088 460 2252 109 3 13 chr15 54219423 54219725 -31476029 + AluSx SINE Alu 1 299 -13 412 322 126 69 chr15 54219725 54219791 -31475963 - L3 LINE CR1 -1117 460 399 282 132 279 0 chr15 54219935 54220003 -31475751 - AluJo SINE Alu -165 137 51 2026 108 30 0 chr15 54220027 54220324 -31475430 - AluSq SINE Alu -7 306 1 380 198 258 88 chr15 54220326 54220543 -31475211 - MER112 DNA MER1_type -1 255 2 5756 176 48 11 chr15 54222580 54223900 -31471854 - L1MC1 LINE L1 -19 6594 5186 2436 94 0 0 chr15 54223900 54224198 -31471556 - AluSx SINE Alu -14 298 1 5756 176 48 11 chr15 54224198 54224704 -31471050 - L1MC1 LINE L1 -1427 5186 4700 2369 81 3 0 chr15 54224715 54225000 -31470754 - AluSp SINE Alu -17 296 11 1885 97 33 66 chr15 54225014 54225279 -31470475 - L1MC1 LINE L1 -3919 2688 2416 2158 141 0 22 chr15 54225279 54225598 -31470156 - AluSx SINE Alu 0 312 1 1258 206 29 65 chr15 54225599 54225759 -31469995 - AluJo SINE Alu -13 299 154 2417 60 0 51 chr15 54225759 54226073 -31469681 - AluY SINE Alu -13 298 1 1258 206 29 65 chr15 54226073 54226222 -31469532 - AluJo SINE Alu -158 154 1 1885 97 33 66 chr15 54226222 54226294 -31469460 - L1MC1 LINE L1 -4191 2416 2343 414 39 0 0 chr15 54226294 54226346 -31469408 + (TG)n Simple_repeat Simple_repeat 2 53 0 2218 112 0 0 chr15 54226346 54226631 -31469123 - AluSq SINE Alu -28 285 1 1885 97 33 66 chr15 54226631 54226937 -31468817 - L1MC1 LINE L1 -4262 2345 2048 661 194 62 0 chr15 54226906 54227035 -31468719 - L1MC1 LINE L1 -5757 669 533 * 351 289 0 0 chr15 54227046 54227122 -31468632 - MER5B DNA MER1_type -66 112 37 1128 162 0 0 chr15 54227122 54227289 -31468465 + AluJb SINE Alu 133 299 -13 395 215 11 0 chr15 54227727 54227820 -31467934 + L1MC5 LINE L1 6764 6857 -1104 1440 116 69 5 chr15 54227820 54228036 -31467718 - AluSx SINE Alu -82 230 1 553 186 191 22 chr15 54228036 54228219 -31467535 + L1ME1 LINE L1 5905 6118 -48 847 299 88 18 chr15 54228230 54228674 -31467080 - L2 LINE L2 -1037 2277 1803 2288 104 0 7 chr15 54228674 54228973 -31466781 + AluSx SINE Alu 3 299 -13 351 253 0 21 chr15 54228973 54229068 -31466686 + MIR SINE MIR 153 245 -17 186 138 0 0 chr15 54229418 54229447 -31466307 - MER5A DNA MER1_type -114 75 47 181 289 114 35 chr15 54230122 54230236 -31465518 + L2 LINE L2 3111 3233 -39 2056 145 0 22 chr15 54236069 54236207 -31459547 + AluJo SINE Alu 1 141 -171 2063 121 7 0 chr15 54236207 54236488 -31459266 + AluSx SINE Alu 14 296 -16 2056 145 0 22 chr15 54236488 54236667 -31459087 + AluJo SINE Alu 141 311 -1 2202 90 14 7 chr15 54236674 54236962 -31458792 + AluY SINE Alu 1 290 -21 233 146 55 18 chr15 54237137 54237192 -31458562 + MIR SINE MIR 92 148 -114 628 191 0 54 chr15 54237194 54237341 -31458413 + L1M4 LINE L1 4717 4855 -1291 2205 121 7 13 chr15 54237341 54237648 -31458106 - AluSx SINE Alu -7 305 1 1942 154 3 3 chr15 54238324 54238622 -31457132 - AluJo SINE Alu -14 298 1 585 151 0 0 chr15 54239244 54239337 -31456417 + AluY SINE Alu 218 310 -1 1779 118 0 0 chr15 54239485 54239714 -31456040 + AluSg/x SINE Alu 66 294 -18 2208 127 0 0 chr15 54239716 54240016 -31455738 + AluSx SINE Alu 1 300 -12 1015 98 0 0 chr15 54245419 54245552 -31450202 - AluSg/x SINE Alu -5 307 175 26 50 0 0 chr15 54245741 54245781 -31449973 + AT_rich Low_complexity Low_complexity 1 40 0 2227 121 10 0 chr15 54245824 54246122 -31449632 + AluSq SINE Alu 1 301 -12 1543 181 11 8 chr15 54246418 54246678 -31449076 + AluJo SINE Alu 25 285 -27 625 63 21 11 chr15 54246678 54246773 -31448981 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 212 0 36 0 chr15 54246770 54246798 -31448956 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 * 1343 122 0 6 chr15 54247153 54247334 -31448420 + AluSx SINE Alu 1 180 -132 2498 79 0 0 chr15 54247510 54247815 -31447939 - AluSg SINE Alu -1 309 5 583 217 6 100 chr15 54249155 54249262 -31446492 + MER103 DNA DNA 3 119 -47 1799 186 3 3 chr15 54249262 54249568 -31446186 - AluJb SINE Alu -6 306 1 583 217 6 100 chr15 54249568 54249598 -31446156 + MER103 DNA DNA 119 122 -44 2272 111 10 0 chr15 54249598 54249904 -31445850 + AluSq SINE Alu 1 309 -4 583 217 6 100 chr15 54249904 54249945 -31445809 + MER103 DNA DNA 122 165 -1 25 0 0 0 chr15 54250045 54250070 -31445684 + AT_rich Low_complexity Low_complexity 1 25 0 371 268 89 38 chr15 54250290 54250447 -31445307 + MIR3 SINE MIR 33 197 -11 1397 196 32 32 chr15 54251907 54252192 -31443562 + AluJo SINE Alu 12 296 -16 2434 72 3 0 chr15 54252195 54252485 -31443269 + AluSp SINE Alu 1 291 -22 2198 111 3 10 chr15 54252487 54252813 -31442941 + AluSx SINE Alu 1 312 0 2447 91 0 0 chr15 54252855 54253153 -31442601 + AluSx SINE Alu 1 298 -14 198 71 0 0 chr15 54254284 54254312 -31441442 + (GA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr15 54254609 54254632 -31441122 + AT_rich Low_complexity Low_complexity 1 23 0 358 221 11 63 chr15 54254632 54254704 -31441050 - L1MC4 LINE L1 -1339 6703 6614 249 121 15 61 chr15 54254662 54254728 -31441026 - LTR66 LTR ERVL -171 439 377 * 2037 164 83 12 chr15 54254748 54255157 -31440597 + MLT2B1 LTR ERVL 1 438 -82 189 129 59 12 chr15 54255194 54255279 -31440475 + (TA)n Simple_repeat Simple_repeat 1 89 0 * 358 377 36 40 chr15 54255219 54255548 -31440206 + L1M4 LINE L1 2127 2454 -3692 250 130 74 0 chr15 54255499 54255607 -31440147 + (TA)n Simple_repeat Simple_repeat 2 117 0 * 336 252 26 90 chr15 54255523 54255678 -31440076 - L1MCa LINE L1 -4363 2063 1919 666 135 159 0 chr15 54255718 54255844 -31439910 + MER90 LTR ERV1 469 614 0 259 279 37 59 chr15 54255908 54256044 -31439710 - L1ME3A LINE L1 -72 6098 5966 1026 258 52 55 chr15 54256150 54256552 -31439202 - L1MC5 LINE L1 -430 7531 7129 2211 59 35 3 chr15 54256552 54256839 -31438915 - AluSq SINE Alu -17 296 1 1026 258 52 55 chr15 54256839 54256925 -31438829 - L1MC5 LINE L1 -832 7129 7044 2065 127 0 0 chr15 54256925 54257216 -31438538 - AluSx SINE Alu -21 291 1 1224 186 68 3 chr15 54257223 54257519 -31438235 - L1MB7 LINE L1 -37 6147 5833 2293 61 3 3 chr15 54258078 54258372 -31437382 + AluY SINE Alu 1 294 -17 1482 176 11 18 chr15 54258631 54258909 -31436845 + AluJb SINE Alu 13 288 -24 494 289 160 11 chr15 54262813 54263000 -31432754 - MIR SINE MIR -41 221 7 317 288 135 0 chr15 54263229 54263340 -31432414 - MIR3 SINE MIR -32 176 51 241 287 252 0 chr15 54263961 54264076 -31431678 + MIR3 SINE MIR 30 173 -35 309 260 104 0 chr15 54264832 54264928 -31430826 + MIR3 SINE MIR 77 182 -26 236 352 6 23 chr15 54266542 54266718 -31429036 + C-rich Low_complexity Low_complexity 1 173 0 200 316 26 61 chr15 54267484 54267598 -31428156 - MIR3 SINE MIR -25 183 74 216 0 0 0 chr15 54268468 54268492 -31427262 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 294 297 108 57 chr15 54268885 54269097 -31426657 + L3 LINE CR1 1153 1375 -202 452 310 139 38 chr15 54269097 54269384 -31426370 - L1ME4a LINE L1 -11 6110 5795 284 335 70 42 chr15 54269484 54269699 -31426055 + MIR SINE MIR 10 230 -32 2047 119 16 0 chr15 54270056 54270086 -31425668 - AluSp SINE Alu 0 313 285 270 0 0 0 chr15 54270086 54270116 -31425638 + (TG)n Simple_repeat Simple_repeat 1 30 0 2047 119 16 0 chr15 54270116 54270388 -31425366 - AluSp SINE Alu -28 285 6 180 374 48 0 chr15 54270691 54270774 -31424980 - L3b LINE CR1 -208 1375 1289 272 315 34 55 chr15 54271517 54271663 -31424091 - MIR3 SINE MIR -63 145 3 182 279 118 0 chr15 54272500 54272568 -31423186 + MIR SINE MIR 125 200 -62 231 36 0 0 chr15 54274785 54274813 -31420941 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 30 0 0 0 chr15 54275079 54275109 -31420645 + AT_rich Low_complexity Low_complexity 1 30 0 1315 254 133 43 chr15 54275338 54276050 -31419704 - L1MC4 LINE L1 -1 8041 7266 333 345 25 40 chr15 54276099 54276299 -31419455 - L1MC4 LINE L1 -1922 5886 5690 472 216 4 0 chr15 54276492 54276606 -31419148 - MIR SINE MIR -87 121 5 279 318 75 0 chr15 54277193 54277300 -31418454 - MIR SINE MIR -37 225 111 563 279 42 42 chr15 54277607 54277797 -31417957 + MIR SINE MIR 73 262 0 457 315 5 60 chr15 54277971 54278171 -31417583 + MIR3 SINE MIR 1 189 -19 257 322 111 0 chr15 54278750 54278840 -31416914 - MIR SINE MIR -134 128 29 276 322 84 25 chr15 54279113 54279315 -31416439 + L2 LINE L2 2852 3065 -207 425 137 0 0 chr15 54279360 54279433 -31416321 + Alu SINE Alu 237 309 -3 235 342 22 0 chr15 54279535 54279624 -31416130 + MIR SINE MIR 64 153 -67 2184 125 72 25 chr15 54279775 54280003 -31415751 - Tigger2 DNA MER2_type 0 2718 2502 1829 137 13 29 chr15 54280003 54280310 -31415444 + AluSx SINE Alu 1 302 -10 2184 125 72 25 chr15 54280310 54280513 -31415241 - Tigger2 DNA MER2_type -216 2502 2267 1066 175 0 0 chr15 54280515 54280681 -31415073 + FRAM SINE Alu 1 166 0 281 206 16 0 chr15 54280681 54280744 -31415010 - Tigger2 DNA MER2_type -2648 70 7 976 251 77 79 chr15 54280748 54280994 -31414760 - L1ME3A LINE L1 -27 6143 5898 1805 150 0 14 chr15 54280994 54281312 -31414442 - AluJb SINE Alu 0 314 1 976 251 77 79 chr15 54281312 54281341 -31414413 - L1ME3A LINE L1 -272 5898 5870 1780 111 114 7 chr15 54281341 54281612 -31414142 + AluSg1 SINE Alu 1 300 -9 976 251 77 79 chr15 54281612 54281852 -31413902 - L1ME3A LINE L1 -300 5870 5627 216 258 16 16 chr15 54281882 54281944 -31413810 - MIR SINE MIR -66 142 81 392 304 56 16 chr15 54283728 54283908 -31411846 - MIR SINE MIR -62 146 7 394 304 124 0 chr15 54285284 54285445 -31410309 + MIR SINE MIR 48 228 -34 291 306 221 33 chr15 54288208 54288479 -31407275 - L2 LINE L2 0 3272 2951 244 264 57 71 chr15 54288560 54288657 -31407097 - L2 LINE L2 -506 2808 2712 2135 114 3 10 chr15 54288657 54288964 -31406790 - AluSx SINE Alu -7 305 1 244 264 57 71 chr15 54288964 54289006 -31406748 - L2 LINE L2 -602 2712 2671 233 341 88 51 chr15 54289036 54289253 -31406501 - L2 LINE L2 -753 2561 2337 1909 153 3 0 chr15 54289254 54289548 -31406206 - AluJo SINE Alu -17 295 1 1920 126 14 3 chr15 54289587 54289881 -31405873 + AluSq SINE Alu 1 297 -16 248 338 65 0 chr15 54289881 54290020 -31405734 - L2 LINE L2 -1250 2064 1917 303 148 0 0 chr15 54290031 54290085 -31405669 - Alu SINE Alu -4 297 244 528 215 0 0 chr15 54340086 54340179 -31355575 - Tigger5 DNA MER2_type -2230 93 1 234 0 0 0 chr15 54340973 54340999 -31354755 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2826 152 7 2 chr15 54341010 54341432 -31354322 - LTR36 LTR ERV1 0 611 188 26 30 0 0 chr15 54341557 54341590 -31354164 + AT_rich Low_complexity Low_complexity 1 33 0 3959 144 6 17 chr15 54342905 54343543 -31352211 - MER50 LTR ERV1 -103 631 1 422 198 0 85 chr15 54343888 54343994 -31351760 + MER34B LTR ERV1 467 583 -2 328 304 68 68 chr15 54344110 54344468 -31351286 - L1M4 LINE L1 -1254 4892 4535 2232 78 4 0 chr15 54344468 54344749 -31351005 - AluY SINE Alu -29 282 1 328 304 68 68 chr15 54344749 54345212 -31350542 - L1M4 LINE L1 -1610 4536 4071 2201 130 0 0 chr15 54345358 54345657 -31350097 - AluSx SINE Alu -13 299 1 282 259 205 0 chr15 54345811 54345977 -31349777 + MIR SINE MIR 59 258 -4 661 161 54 31 chr15 54346122 54346252 -31349502 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr15 54346261 54346282 -31349472 + AT_rich Low_complexity Low_complexity 1 21 0 1403 92 0 0 chr15 54346500 54346673 -31349081 - AluSg/x SINE Alu -11 301 129 32 0 0 0 chr15 54346776 54346808 -31348946 + AT_rich Low_complexity Low_complexity 1 32 0 2189 99 3 30 chr15 54346811 54347113 -31348641 + AluSg1 SINE Alu 1 294 -15 2400 89 0 10 chr15 54347172 54347486 -31348268 + AluY SINE Alu 1 311 0 1276 107 0 0 chr15 54347486 54347655 -31348099 + AluSg/x SINE Alu 130 298 -12 953 256 140 33 chr15 54347671 54348139 -31347615 + MLT1H1 LTR MaLR 1 487 -68 743 171 0 0 chr15 54348146 54348263 -31347491 + AluJo/FLAM SINE Alu 1 117 -185 315 169 154 0 chr15 54348263 54348328 -31347426 - AluSg/x SINE Alu -9 293 219 2084 78 8 0 chr15 54348428 54348685 -31347069 - AluY SINE Alu -52 259 1 639 74 0 0 chr15 54348689 54348770 -31346984 - AluSc SINE Alu -12 297 217 1457 80 5 28 chr15 54349817 54350030 -31345724 - AluY SINE Alu 0 311 104 658 223 90 20 chr15 54350130 54350431 -31345323 + HAL1 LINE L1 1000 1321 -1186 468 328 34 30 chr15 54350517 54350779 -31344975 - L3 LINE CR1 -576 1001 739 198 0 0 0 chr15 54351389 54351411 -31344343 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2011 111 22 0 chr15 54351411 54351681 -31344073 - AluSx SINE Alu -36 276 1 2198 88 7 11 chr15 54352165 54352449 -31343305 - AluSg SINE Alu -19 291 9 2328 109 3 0 chr15 54352505 54352808 -31342946 - AluSx SINE Alu -8 304 1 1857 166 3 13 chr15 54353670 54353971 -31341783 + AluJb SINE Alu 1 298 -14 1560 122 0 9 chr15 54354065 54354287 -31341467 + AluJb SINE Alu 14 233 -79 2148 94 24 3 chr15 54354418 54354705 -31341049 + AluSx SINE Alu 1 293 -19 243 0 0 0 chr15 54354705 54354732 -31341022 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 306 94 43 0 chr15 54354791 54354846 -31340908 + Alu SINE Alu 246 295 -7 695 174 1 9 chr15 54354888 54355018 -31340736 + L1ME LINE L1 5532 5653 -511 1252 157 65 23 chr15 54355275 54355537 -31340217 + AluJo SINE Alu 31 303 -9 2465 70 0 3 chr15 54355598 54355896 -31339858 - AluY SINE Alu -14 297 1 915 161 37 6 chr15 54356414 54356575 -31339179 + FRAM SINE Alu 1 166 0 940 180 143 29 chr15 54356614 54356859 -31338895 + AluSg SINE Alu 1 273 -37 213 65 0 0 chr15 54356866 54356897 -31338857 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 416 137 0 27 chr15 54356914 54356987 -31338767 - AluSg/x SINE Alu -69 241 171 1475 271 63 15 chr15 54357143 54357616 -31338138 - L2 LINE L2 -1 3312 2817 1812 163 14 0 chr15 54357689 54357978 -31337776 - AluSx SINE Alu -18 294 2 202 29 57 0 chr15 54357993 54358028 -31337726 + (TAA)n Simple_repeat Simple_repeat 2 38 0 262 163 23 0 chr15 54358028 54358071 -31337683 + Alu SINE Alu 1 44 -258 28 29 0 0 chr15 54358085 54358120 -31337634 + AT_rich Low_complexity Low_complexity 1 35 0 824 214 59 27 chr15 54358133 54358262 -31337492 + MLT1G LTR MaLR 398 537 -53 1924 120 3 7 chr15 54358262 54358581 -31337173 + AluSq SINE Alu 1 318 0 824 214 59 27 chr15 54358581 54358637 -31337117 + MLT1G LTR MaLR 537 590 0 1561 53 10 19 chr15 54358773 54358981 -31336773 + AluY SINE Alu 1 206 -105 2267 82 0 0 chr15 54359089 54359382 -31336372 + AluY SINE Alu 1 293 -18 2485 58 0 3 chr15 54359382 54359694 -31336060 + AluY SINE Alu 1 311 0 3796 210 28 27 chr15 54359718 54360551 -31335203 + L1ME3 LINE L1 5141 5976 -186 2136 99 0 0 chr15 54360551 54360860 -31334894 + AluSx SINE Alu 1 309 0 3796 210 28 27 chr15 54360860 54361041 -31334713 + L1ME3 LINE L1 5976 6155 -7 1645 163 97 9 chr15 54361050 54361370 -31334384 - MER7A DNA MER2_type 0 346 1 2095 76 21 14 chr15 54361444 54361732 -31334022 + AluY SINE Alu 1 290 -21 402 213 122 58 chr15 54361733 54361876 -31333878 + L1ME LINE L1 4280 4412 -1734 2398 61 7 3 chr15 54361876 54362186 -31333568 + AluY SINE Alu 1 311 0 402 213 122 58 chr15 54362186 54362210 -31333544 + L1ME LINE L1 4412 4433 -1713 790 173 0 16 chr15 54362210 54362337 -31333417 - FLAM_C SINE Alu -8 125 1 402 213 122 58 chr15 54362337 54362349 -31333405 + L1ME LINE L1 4433 4472 -1674 2258 75 3 0 chr15 54362379 54362673 -31333081 - AluY SINE Alu -16 295 1 310 271 85 8 chr15 54362673 54362802 -31332952 + L1ME LINE L1 4439 4577 -1569 198 0 0 0 chr15 54362848 54362870 -31332884 + (A)n Simple_repeat Simple_repeat 1 22 0 443 225 75 53 chr15 54362884 54362946 -31332808 + L1ME LINE L1 5280 5339 -825 2068 105 0 3 chr15 54362946 54363231 -31332523 + AluSx SINE Alu 2 285 -27 213 65 0 0 chr15 54363231 54363262 -31332492 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 443 225 75 53 chr15 54363262 54363425 -31332329 + L1ME LINE L1 5338 5511 -653 603 276 80 33 chr15 54363576 54363851 -31331903 - MLT1L LTR MaLR -71 544 257 819 156 3 14 chr15 54363855 54364003 -31331751 + MSTC LTR MaLR 1 150 -215 798 262 37 0 chr15 54364119 54364310 -31331444 + MSTC LTR MaLR 167 364 -1 2334 71 0 7 chr15 54364878 54365174 -31330580 + AluSx SINE Alu 1 294 -18 1638 185 13 3 chr15 54365184 54365482 -31330272 - AluJb SINE Alu -11 301 1 366 200 67 115 chr15 54365587 54365715 -31330039 - L1MA10 LINE L1 -1 6333 6213 2095 125 0 0 chr15 54365715 54366018 -31329736 + AluSq SINE Alu 1 303 -10 366 200 67 115 chr15 54366018 54366054 -31329700 - L1MA10 LINE L1 -121 6213 6177 2421 51 0 3 chr15 54366478 54366774 -31328980 - AluY SINE Alu -13 298 4 1106 211 20 5 chr15 54366840 54367039 -31328715 + MER20 DNA MER1_type 1 202 -17 699 207 6 59 chr15 54367712 54367881 -31327873 + FAM SINE Alu 4 163 -12 2391 71 0 0 chr15 54367890 54368201 -31327553 + AluY SINE Alu 1 311 0 2335 85 0 0 chr15 54368230 54368537 -31327217 + AluSc SINE Alu 1 307 -2 222 254 133 74 chr15 54368638 54368829 -31326925 + L2 LINE L2 2808 3019 -253 2330 26 16 48 chr15 54368829 54369142 -31326612 + AluY SINE Alu 1 303 -8 222 254 133 74 chr15 54369142 54369206 -31326548 + L2 LINE L2 3019 3078 -194 1742 139 0 65 chr15 54369344 54369439 -31326315 + AluJb SINE Alu 1 101 -211 2200 107 0 3 chr15 54369439 54369749 -31326005 + AluSg SINE Alu 1 309 -1 1742 139 0 65 chr15 54369749 54369976 -31325778 + AluJb SINE Alu 101 302 -10 282 289 104 64 chr15 54370318 54370567 -31325187 + L2 LINE L2 1823 2081 -1233 306 183 65 118 chr15 54370682 54370778 -31324976 + MER104 DNA MER2_type 5 88 -1810 1995 112 27 7 chr15 54370778 54371073 -31324681 - AluSx SINE Alu -11 301 1 306 183 65 118 chr15 54371073 54371162 -31324592 + MER104 DNA MER2_type 88 180 0 445 131 57 90 chr15 54371323 54371377 -31324377 - L1MC4 LINE L1 0 8042 7988 1985 139 0 3 chr15 54371377 54371680 -31324074 + AluJo SINE Alu 1 302 -10 445 131 57 90 chr15 54371680 54371747 -31324007 - L1MC4 LINE L1 -54 7988 7925 2328 78 3 0 chr15 54371747 54372054 -31323700 - AluSp SINE Alu -5 308 1 542 236 16 16 chr15 54372056 54372179 -31323575 - FLAM_A SINE Alu -14 128 6 1171 257 78 48 chr15 54372188 54372299 -31323455 - L1MC4 LINE L1 -121 7921 7815 2041 134 3 10 chr15 54372299 54372612 -31323142 + AluJb SINE Alu 1 311 -1 1171 257 78 48 chr15 54372612 54372745 -31323009 - L1MC4 LINE L1 -227 7815 7687 2057 98 0 10 chr15 54372745 54373040 -31322714 + AluSc SINE Alu 1 292 -17 1171 257 78 48 chr15 54373040 54373052 -31322702 - L1MC4 LINE L1 -355 7687 7677 2024 86 11 4 chr15 54373052 54373330 -31322424 + AluSp SINE Alu 21 300 -13 1171 257 78 48 chr15 54373330 54373573 -31322181 - L1MC4 LINE L1 -365 7677 7405 1811 103 15 8 chr15 54373573 54373835 -31321919 - AluSx SINE Alu -8 304 41 450 116 0 23 chr15 54373837 54373923 -31321831 - AluS SINE Alu 0 309 226 2115 120 0 10 chr15 54374029 54374164 -31321590 + AluSx SINE Alu 1 136 -176 2048 77 52 11 chr15 54374164 54374451 -31321303 + AluY SINE Alu 1 299 -12 2115 120 0 10 chr15 54374451 54374623 -31321131 + AluSx SINE Alu 136 305 -7 796 223 17 0 chr15 54374632 54374807 -31320947 - L1MC4 LINE L1 -1033 7009 6832 604 243 96 61 chr15 54374805 54375047 -31320707 - L1MC4a LINE L1 -1202 6606 6374 * 1846 145 0 16 chr15 54375047 54375215 -31320539 - AluJo SINE Alu -13 299 137 2258 97 0 3 chr15 54375215 54375523 -31320231 - AluSc SINE Alu -2 307 1 1846 145 0 16 chr15 54375523 54375658 -31320096 - AluJo SINE Alu -175 137 1 604 243 96 61 chr15 54375658 54376153 -31319601 - L1MC4a LINE L1 -1434 6374 5785 2014 134 0 7 chr15 54376153 54376459 -31319295 - AluSx SINE Alu -7 305 2 604 243 96 61 chr15 54376459 54376650 -31319104 - L1MC4a LINE L1 -2023 5785 5602 508 213 71 128 chr15 54376645 54376941 -31318813 - L1MC4 LINE L1 -1856 5952 5674 * 378 0 0 0 chr15 54377100 54377142 -31318612 + (TG)n Simple_repeat Simple_repeat 1 42 0 1900 141 10 0 chr15 54377143 54377434 -31318320 - AluJb SINE Alu -18 294 1 404 174 35 12 chr15 54377578 54377664 -31318090 - L1ME3A LINE L1 -164 6006 5919 188 282 56 0 chr15 54378116 54378187 -31317567 + L2 LINE L2 2818 2892 -380 1341 147 131 0 chr15 54378199 54378451 -31317303 + AluJo SINE Alu 11 295 -17 1667 172 3 7 chr15 54378581 54378871 -31316883 + AluJb SINE Alu 1 289 -23 25 0 0 0 chr15 54378872 54378897 -31316857 + AT_rich Low_complexity Low_complexity 1 25 0 2454 55 0 7 chr15 54379818 54380125 -31315629 - AluSx SINE Alu -7 305 1 26 50 0 0 chr15 54381347 54381387 -31314367 + GC_rich Low_complexity Low_complexity 1 40 0 2183 58 3 23 chr15 54381603 54381913 -31313841 + AluSp SINE Alu 3 306 -7 2285 80 7 0 chr15 54381981 54382280 -31313474 + AluSp SINE Alu 2 302 -11 212 181 89 0 chr15 54382346 54382396 -31313358 - MIR3 SINE MIR -52 156 102 2859 166 73 19 chr15 54382900 54383118 -31312636 + MER39 LTR ERV1 85 290 -417 1192 137 204 31 chr15 54383118 54383373 -31312381 + AluY SINE Alu 1 299 -2 2859 166 73 19 chr15 54383373 54383389 -31312365 + MER39 LTR ERV1 290 304 -403 1985 104 45 0 chr15 54383389 54383676 -31312078 + AluSx SINE Alu 1 300 -12 2023 137 3 0 chr15 54383681 54383981 -31311773 + AluSp SINE Alu 1 301 -12 2859 166 73 19 chr15 54383981 54384330 -31311424 + MER39 LTR ERV1 307 707 0 382 295 47 83 chr15 54384620 54384682 -31311072 - MIR SINE MIR -64 198 135 2092 125 0 0 chr15 54384682 54384993 -31310761 - AluSx SINE Alu -1 311 1 382 295 47 83 chr15 54384993 54385123 -31310631 - MIR SINE MIR -127 135 13 1319 197 152 98 chr15 54385237 54385566 -31310188 - MLT1E1 LTR MaLR -98 556 187 1755 86 20 0 chr15 54385566 54385810 -31309944 + AluSx SINE Alu 48 296 -16 1319 197 152 98 chr15 54385810 54386008 -31309746 - MLT1E1 LTR MaLR -467 187 1 1759 178 0 6 chr15 54386502 54386816 -31308938 - AluJo SINE Alu 0 312 1 2361 55 0 0 chr15 54386972 54387265 -31308489 + AluY SINE Alu 1 293 -18 274 281 0 0 chr15 54387453 54387517 -31308237 + MIR SINE MIR 84 147 -115 985 84 8 0 chr15 54387517 54387648 -31308106 + AluSp SINE Alu 1 132 -181 327 106 0 0 chr15 54387648 54387695 -31308059 - AluSg/x SINE Alu -85 217 171 824 122 0 0 chr15 54387700 54387815 -31307939 + AluSp SINE Alu 152 266 -47 986 181 0 0 chr15 54387831 54387997 -31307757 + FRAM SINE Alu 1 166 0 369 225 25 58 chr15 54388004 54388124 -31307630 + MIR SINE MIR 137 252 -10 370 82 0 0 chr15 54388197 54388246 -31307508 - MSTD LTR MaLR 0 457 409 207 0 0 0 chr15 54388246 54388269 -31307485 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 889 152 0 0 chr15 54388278 54388416 -31307338 - AluJb SINE Alu -49 263 126 1315 199 32 44 chr15 54388418 54388617 -31307137 - MSTD LTR MaLR -45 351 156 1749 124 4 0 chr15 54388617 54388874 -31306880 - AluSp SINE Alu -55 258 1 1315 199 32 44 chr15 54388874 54388990 -31306764 - MSTD LTR MaLR -240 156 40 1610 154 48 0 chr15 54389003 54389276 -31306478 - AluJo SINE Alu -1 311 26 306 187 132 44 chr15 54389297 54389388 -31306366 - MLT1B LTR MaLR -122 268 170 2416 51 0 3 chr15 54389394 54389688 -31306066 - AluY SINE Alu -18 293 1 786 118 8 0 chr15 54389691 54389810 -31305944 - FLAM_A SINE Alu -13 129 10 294 343 11 10 chr15 54389957 54390074 -31305680 - MER5A DNA MER1_type -10 168 61 1903 131 3 10 chr15 54390094 54390408 -31305346 - AluSq SINE Alu -1 312 1 1909 122 7 20 chr15 54390408 54390703 -31305051 - AluSx SINE Alu -14 298 7 985 173 12 0 chr15 54390707 54390875 -31304879 - FRAM SINE Alu -15 161 1 2005 120 20 3 chr15 54390889 54391189 -31304565 - AluSx SINE Alu -7 305 1 252 114 0 0 chr15 54391204 54391239 -31304515 - U2 snRNA snRNA -153 35 1 196 164 55 73 chr15 54391243 54391298 -31304456 + MER5B DNA MER1_type 118 171 -7 294 224 35 0 chr15 54391340 54391398 -31304356 - MIR SINE MIR -64 144 85 1967 120 0 7 chr15 54391624 54391963 -31303791 - AluSx SINE Alu 0 337 1 27 0 0 0 chr15 54391973 54392000 -31303754 + AT_rich Low_complexity Low_complexity 1 27 0 873 258 50 5 chr15 54392118 54392339 -31303415 - MIR SINE MIR -16 246 16 413 231 69 40 chr15 54393434 54393607 -31302147 - L1M4 LINE L1 -3722 2424 2247 877 171 0 7 chr15 54393607 54393789 -31301965 - AluSg/x SINE Alu 0 312 132 2181 84 3 7 chr15 54393789 54394087 -31301667 - AluY SINE Alu -14 297 1 216 158 0 0 chr15 54394093 54394131 -31301623 + (TA)n Simple_repeat Simple_repeat 1 38 0 351 298 23 15 chr15 54394131 54394254 -31301500 - L1MEc LINE L1 -3770 2445 2319 203 0 0 36 chr15 54394254 54394282 -31301472 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1565 68 0 24 chr15 54394294 54394501 -31301253 - AluY SINE Alu -107 204 3 305 259 13 84 chr15 54394511 54394549 -31301205 - L1MEc LINE L1 -4256 2140 2101 1975 100 7 42 chr15 54394549 54394723 -31301031 - AluSc SINE Alu -11 298 138 2097 89 13 20 chr15 54394723 54395025 -31300729 - AluSg SINE Alu -10 300 1 1975 100 7 42 chr15 54395025 54395159 -31300595 - AluSc SINE Alu -171 138 1 305 259 13 84 chr15 54395159 54395359 -31300395 - L1MEc LINE L1 -4295 2101 1919 1590 184 0 54 chr15 54395361 54395676 -31300078 - AluJo SINE Alu -4 298 1 1128 179 0 34 chr15 54395833 54396067 -31299687 + AluJb SINE Alu 86 311 -1 847 220 193 19 chr15 54396090 54396349 -31299405 - AluYa8 SINE Alu 0 310 7 814 247 90 49 chr15 54396351 54396483 -31299271 - L1MEc LINE L1 -4675 1721 1596 1847 140 3 14 chr15 54396483 54396794 -31298960 - AluSx SINE Alu 0 312 5 814 247 90 49 chr15 54396794 54397050 -31298704 - L1MEc LINE L1 -4800 1596 1317 1208 107 0 0 chr15 54397180 54397349 -31298405 - AluSg/x SINE Alu -12 298 130 1949 143 0 10 chr15 54397349 54397663 -31298091 - AluY SINE Alu 0 311 1 1642 180 3 3 chr15 54397722 54398017 -31297737 - AluSg SINE Alu -15 295 1 1412 153 4 9 chr15 54398041 54398269 -31297485 - AluJo SINE Alu -37 275 49 1697 171 20 26 chr15 54398269 54398375 -31297379 - L1ME1 LINE L1 -234 5932 5827 622 247 26 63 chr15 54398375 54398646 -31297108 - L1PB3 LINE L1 -321 5833 5573 711 87 0 0 chr15 54398692 54398784 -31296970 + L1P LINE L1 11 102 -6044 * 24907 56 2 4 chr15 54398778 54401937 -31293817 + L1P LINE L1 1094 4247 -1899 2112 93 7 3 chr15 54401938 54402229 -31293525 + AluSg SINE Alu 1 292 -18 4616 217 57 85 chr15 54402229 54403898 -31291856 - L1MB7 LINE L1 -62 6122 4408 1706 101 0 0 chr15 54403898 54404135 -31291619 - AluSc SINE Alu -2 307 71 1225 117 0 0 chr15 54404135 54404315 -31291439 - AluSc SINE Alu -1 308 129 4616 217 57 85 chr15 54404315 54405193 -31290561 - L1MB7 LINE L1 -1774 4410 3491 246 263 12 0 chr15 54405186 54405266 -31290488 - L1M4 LINE L1 -1822 4324 4244 * 2737 205 17 74 chr15 54405241 54405995 -31289759 - L1M4 LINE L1 -1386 4760 4065 1874 106 95 0 chr15 54405995 54406279 -31289475 - AluSq SINE Alu -2 311 1 2737 205 17 74 chr15 54406279 54406425 -31289329 - L1M4 LINE L1 -2081 4065 3912 299 211 146 53 chr15 54406760 54406931 -31288823 - L1ME4a LINE L1 -128 5993 5807 1276 109 0 0 chr15 54407002 54407186 -31288568 - AluSc SINE Alu -7 302 119 713 71 0 0 chr15 54407206 54407305 -31288449 - AluY SINE Alu -4 307 209 2358 96 3 0 chr15 54408200 54408501 -31287253 - AluSx SINE Alu -10 302 1 281 232 49 0 chr15 54409597 54409679 -31286075 + GA-rich Low_complexity Low_complexity 5 90 0 198 0 0 0 chr15 54411264 54411286 -31284468 + (CG)n Simple_repeat Simple_repeat 2 23 0 221 139 0 0 chr15 54411550 54411586 -31284168 + MIR SINE MIR 117 152 -110 203 0 37 0 chr15 54411947 54411974 -31283780 + (GA)n Simple_repeat Simple_repeat 2 29 0 588 258 10 57 chr15 54413145 54413339 -31282415 + MIR SINE MIR 63 247 -15 23 0 0 0 chr15 54413361 54413384 -31282370 + AT_rich Low_complexity Low_complexity 1 23 0 2197 120 3 0 chr15 54413391 54413691 -31282063 + AluSx SINE Alu 1 301 -11 388 270 7 61 chr15 54413756 54413904 -31281850 - MLT1I LTR MaLR -198 211 72 334 267 0 67 chr15 54414174 54414211 -31281543 - MIR SINE MIR -76 186 148 2439 87 3 0 chr15 54414211 54414521 -31281233 + AluY SINE Alu 1 311 0 334 267 0 67 chr15 54414521 54414588 -31281166 - MIR SINE MIR -114 148 89 802 306 24 0 chr15 54414630 54414878 -31280876 - LTR16C LTR ERVL -4 487 234 2424 92 0 0 chr15 54415141 54415434 -31280320 + AluSq SINE Alu 6 298 -15 764 238 11 27 chr15 54415441 54415802 -31279952 + AluJb SINE Alu 131 312 0 3408 181 29 44 chr15 54416109 54416513 -31279241 + L1ME2 LINE L1 5199 5607 -557 2560 51 0 0 chr15 54416513 54416806 -31278948 - AluY SINE Alu -18 293 1 3408 181 29 44 chr15 54416806 54417262 -31278492 + L1ME2 LINE L1 5607 6068 -96 2197 117 14 0 chr15 54417262 54417553 -31278201 + AluSx SINE Alu 1 295 -17 3408 181 29 44 chr15 54417553 54417606 -31278148 + L1ME2 LINE L1 6068 6097 -67 2154 145 3 0 chr15 54417606 54417910 -31277844 + AluSx SINE Alu 1 305 -7 3408 181 29 44 chr15 54417910 54417969 -31277785 + L1ME2 LINE L1 6097 6155 -9 1743 175 3 3 chr15 54418000 54418286 -31277468 + AluJb SINE Alu 1 286 -26 688 134 30 0 chr15 54418354 54418488 -31277266 + L1M4 LINE L1 5237 5374 -772 2196 119 7 0 chr15 54418736 54419046 -31276708 + AluJb SINE Alu 1 312 0 663 204 72 61 chr15 54419479 54419572 -31276182 + L1MD3 LINE L1 7476 7566 -429 2231 115 10 0 chr15 54419572 54419868 -31275886 - AluSx SINE Alu -13 299 1 663 204 72 61 chr15 54419868 54419955 -31275799 + L1MD3 LINE L1 7566 7658 -337 247 321 107 40 chr15 54420043 54420493 -31275261 + L2 LINE L2 2553 3036 -236 2043 159 3 0 chr15 54420636 54420944 -31274810 - AluSx SINE Alu -3 309 1 1023 147 96 60 chr15 54421237 54421283 -31274471 + MER63 DNA MER1_type 2 45 -1016 258 32 0 0 chr15 54421283 54421314 -31274440 + (TG)n Simple_repeat Simple_repeat 2 32 0 1023 147 96 60 chr15 54421314 54421518 -31274236 + MER63 DNA MER1_type 45 261 -800 2176 114 0 14 chr15 54421544 54421841 -31273913 + AluSc SINE Alu 1 293 -16 1885 196 10 32 chr15 54421843 54422136 -31273618 + MER63 DNA MER1_type 667 950 -110 1779 186 3 7 chr15 54422136 54422297 -31273457 - AluJb SINE Alu -17 295 134 188 35 35 0 chr15 54422297 54422326 -31273428 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1779 186 3 7 chr15 54422326 54422460 -31273294 - AluJb SINE Alu -178 134 1 1885 196 10 32 chr15 54422460 54422569 -31273185 + MER63 DNA MER1_type 950 1060 0 249 336 84 38 chr15 54422592 54422937 -31272817 + L2 LINE L2 651 1011 -2303 1829 87 36 8 chr15 54423133 54423386 -31272368 + AluY SINE Alu 40 299 -12 711 70 0 10 chr15 54423394 54423494 -31272260 + HY3 scRNA scRNA 1 99 -2 1639 154 68 0 chr15 54423625 54423905 -31271849 - AluJo SINE Alu -7 305 7 2065 84 110 0 chr15 54423905 54424178 -31271576 - AluSp SINE Alu -10 303 1 896 148 0 0 chr15 54424179 54424307 -31271447 - FRAM SINE Alu -10 166 39 1478 120 31 127 chr15 54424626 54424808 -31270946 - AluSg SINE Alu 0 310 112 2442 88 0 0 chr15 54424808 54425113 -31270641 - AluY SINE Alu -6 305 1 2423 82 0 0 chr15 54425115 54425409 -31270345 - AluSx SINE Alu -18 294 1 270 0 0 0 chr15 54425412 54425442 -31270312 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1478 120 31 127 chr15 54425442 54425576 -31270178 - AluSg SINE Alu -201 109 18 945 112 26 0 chr15 54425578 54425730 -31270024 - L1MB2 LINE L1 -33 6138 5983 1763 161 4 0 chr15 54425730 54425997 -31269757 - AluJb SINE Alu -40 272 5 377 192 30 40 chr15 54426222 54426321 -31269433 - LTR16B LTR ERVL 0 464 367 1878 152 0 0 chr15 54426517 54426794 -31268960 - AluSx SINE Alu -2 310 34 1261 278 32 13 chr15 54426812 54427190 -31268564 - LTR16B LTR ERVL -79 385 1 241 185 0 92 chr15 54427227 54427292 -31268462 - MLT1J LTR MaLR -11 500 442 1914 148 0 3 chr15 54427430 54427713 -31268041 - AluJb SINE Alu -30 282 1 754 228 42 75 chr15 54427729 54428036 -31267718 - MLT1J LTR MaLR -214 297 1 442 259 44 15 chr15 54428183 54428318 -31267436 + L2 LINE L2 3175 3313 0 225 313 33 60 chr15 54428567 54428749 -31267005 + L2 LINE L2 1492 1668 -1646 353 303 35 47 chr15 54429351 54429605 -31266149 + L1MCa LINE L1 1918 2168 -4258 27 29 0 0 chr15 54429605 54429639 -31266115 + AT_rich Low_complexity Low_complexity 1 34 0 301 139 35 81 chr15 54429644 54429730 -31266024 + L1MCa LINE L1 1983 2064 -4362 301 297 72 68 chr15 54429677 54429940 -31265814 - L1ME4a LINE L1 -152 5969 5706 * 304 288 98 34 chr15 54429824 54430029 -31265725 + L1MCa LINE L1 1954 2171 -4255 25 65 0 0 chr15 54430038 54430084 -31265670 + AT_rich Low_complexity Low_complexity 1 46 0 225 93 124 6 chr15 54430095 54430256 -31265498 + (TA)n Simple_repeat Simple_repeat 1 180 0 1518 211 25 4 chr15 54430862 54431142 -31264612 - AluJb SINE Alu -25 287 2 2104 146 0 3 chr15 54431144 54431445 -31264309 - AluJb SINE Alu -12 300 1 808 161 15 0 chr15 54431445 54431575 -31264179 - AluJo SINE Alu -177 135 4 1405 139 0 23 chr15 54431650 54431866 -31263888 - AluJb SINE Alu 0 312 102 543 172 39 90 chr15 54431968 54432186 -31263568 - L1MDb LINE L1 -5042 1501 1324 599 106 26 9 chr15 54432186 54432299 -31263455 + L1MA8 LINE L1 6176 6290 -1 543 172 39 90 chr15 54432299 54432335 -31263419 - L1MDb LINE L1 -5219 1324 1288 2606 54 0 0 chr15 54432373 54432671 -31263083 - AluY SINE Alu -12 299 2 2042 118 3 58 chr15 54433763 54434093 -31261661 - AluSx SINE Alu 0 312 1 736 222 12 19 chr15 54434103 54434265 -31261489 - MIR SINE MIR -88 174 14 2331 96 0 0 chr15 54434327 54434619 -31261135 + AluSc SINE Alu 1 292 -17 475 229 50 9 chr15 54434846 54435037 -31260717 + MIR SINE MIR 1 262 0 2366 92 0 0 chr15 54436161 54436454 -31259300 - AluY SINE Alu -18 293 1 823 183 182 110 chr15 54436455 54436904 -31258850 + MLT1F LTR MaLR 1 488 -54 592 162 0 0 chr15 54436907 54437006 -31258748 - AluJb SINE Alu -8 304 206 400 149 15 0 chr15 54437023 54437090 -31258664 + MLT1F LTR MaLR 500 567 0 441 265 61 14 chr15 54437195 54437342 -31258412 + MIR SINE MIR 35 188 -74 2482 55 0 0 chr15 54437410 54437733 -31258021 - AluY SINE Alu 0 311 1 493 203 189 20 chr15 54438168 54438321 -31257433 - MIR SINE MIR 0 262 84 317 189 180 45 chr15 54438321 54438432 -31257322 + MER69A DNA AcHobo 1 126 -51 209 328 0 32 chr15 54438808 54438994 -31256760 + CT-rich Low_complexity Low_complexity 1 180 0 282 289 0 0 chr15 54439371 54439454 -31256300 - L3 LINE CR1 -88 1489 1407 787 117 70 0 chr15 54440331 54440459 -31255295 - L1MA2 LINE L1 0 6304 6168 2115 128 0 0 chr15 54440475 54440771 -31254983 - AluSx SINE Alu -16 296 1 200 155 35 35 chr15 54441572 54441630 -31254124 + (CCGGG)n Simple_repeat Simple_repeat 3 60 0 2426 78 0 26 chr15 54444427 54444733 -31251021 + AluSg SINE Alu 1 298 -12 2347 97 0 0 chr15 54444883 54445181 -31250573 - AluSx SINE Alu -14 298 1 2244 104 0 0 chr15 54445185 54445498 -31250256 - AluSc SINE Alu 0 309 8 23 0 0 0 chr15 54445498 54445521 -31250233 + AT_rich Low_complexity Low_complexity 1 23 0 2010 108 4 0 chr15 54445521 54445781 -31249973 - AluSx SINE Alu -49 263 3 2268 122 0 0 chr15 54445785 54446097 -31249657 - AluSx SINE Alu 0 312 1 1652 93 85 24 chr15 54446881 54447127 -31248627 + AluSq SINE Alu 1 261 -52 232 214 71 98 chr15 54447423 54447535 -31248219 - L2 LINE L2 -550 2764 2656 229 163 20 20 chr15 54448049 54448098 -31247656 + GA-rich Low_complexity Low_complexity 2 50 0 186 304 43 0 chr15 54448242 54448311 -31247443 + L2 LINE L2 3200 3271 -1 1287 167 4 93 chr15 54448320 54448589 -31247165 + AluJb SINE Alu 1 245 -67 656 180 78 144 chr15 54448826 54448903 -31246851 + MLT1C LTR MaLR 1 82 -385 2093 128 10 20 chr15 54448903 54449208 -31246546 + AluSx SINE Alu 1 302 -10 2409 93 3 0 chr15 54449208 54449508 -31246246 + AluSp SINE Alu 1 301 -12 656 180 78 144 chr15 54449508 54449713 -31246041 + MLT1C LTR MaLR 80 265 -202 286 156 0 0 chr15 54449821 54449866 -31245888 - Alu SINE Alu -255 45 1 2490 85 0 0 chr15 54450149 54450455 -31245299 + AluY SINE Alu 1 306 -5 2540 80 0 0 chr15 54450457 54450758 -31244996 + AluSg SINE Alu 1 301 -9 805 222 12 0 chr15 54450770 54450932 -31244822 + FAM SINE Alu 1 164 -11 1858 190 82 0 chr15 54451117 54451506 -31244248 + LOR1b LTR ERV1 40 460 -1 458 198 112 0 chr15 54451602 54451718 -31244036 + MER94 DNA DNA 2 130 -4 387 159 105 171 chr15 54451775 54451885 -31243869 - MIR SINE MIR -66 142 98 2185 93 28 7 chr15 54451885 54452174 -31243580 - AluSx SINE Alu -17 295 1 387 159 105 171 chr15 54452174 54452265 -31243489 - MIR SINE MIR -110 98 3 484 149 35 79 chr15 54453099 54453213 -31242541 - L1MC1 LINE L1 0 6333 6225 1854 162 14 7 chr15 54453226 54453522 -31242232 - AluSx SINE Alu -14 298 1 372 264 68 20 chr15 54454172 54454320 -31241434 + LOR1b-int LTR ERV1 216 370 -6279 1103 325 35 20 chr15 54454985 54455622 -31240132 + LOR1b-int LTR ERV1 1290 1935 -5850 488 221 103 22 chr15 54455624 54455760 -31239994 + LTR18B LTR ERVL 353 499 -115 2151 331 9 14 chr15 54455781 54455819 -31239935 + Harlequin LTR ERV1 4835 4872 -2913 3679 135 94 43 chr15 54455819 54456560 -31239194 - LTR19C LTR ERV1 0 779 1 2151 331 9 14 chr15 54456560 54457448 -31238306 + Harlequin LTR ERV1 4872 5756 -2029 390 314 0 0 chr15 54457682 54457806 -31237948 + Harlequin LTR ERV1 3029 3152 -3744 2373 84 3 3 chr15 54457980 54458278 -31237476 - AluY SINE Alu -13 298 1 504 303 90 76 chr15 54458391 54458813 -31236941 - L2 LINE L2 -5 3267 2840 400 289 146 21 chr15 54458852 54459132 -31236622 + L3 LINE CR1 867 1181 -396 314 306 52 0 chr15 54459179 54459313 -31236441 + L3 LINE CR1 1337 1477 -100 484 169 23 101 chr15 54460031 54460100 -31235654 - L1ME2 LINE L1 0 6164 6091 1632 164 34 17 chr15 54460100 54460392 -31235362 - AluJb SINE Alu -15 297 1 484 169 23 101 chr15 54460392 54460492 -31235262 - L1ME2 LINE L1 -73 6091 6017 238 352 72 8 chr15 54461900 54462025 -31233729 - MIR SINE MIR -110 152 20 751 189 0 0 chr15 54462116 54462238 -31233516 - FLAM_A SINE Alu -11 122 1 856 262 62 30 chr15 54462239 54462789 -31232965 + HAL1 LINE L1 849 1441 -1066 508 186 139 0 chr15 54462797 54462926 -31232828 + L1M4b LINE L1 11 157 -6702 1584 169 19 0 chr15 54462926 54463192 -31232562 + AluJb SINE Alu 1 271 -41 1622 187 42 29 chr15 54463192 54463571 -31232183 + L1M4b LINE L1 978 1361 -5498 1973 138 17 0 chr15 54463581 54463877 -31231877 - AluSx SINE Alu -10 302 2 22 56 0 0 chr15 54463882 54463918 -31231836 + AT_rich Low_complexity Low_complexity 1 36 0 988 121 91 5 chr15 54463947 54464145 -31231609 + L1M4b LINE L1 1343 1557 -5302 2246 105 7 0 chr15 54464145 54464449 -31231305 + AluSc SINE Alu 1 306 -3 1630 166 3 33 chr15 54464457 54464587 -31231167 + AluJo SINE Alu 5 137 -175 2375 71 0 3 chr15 54464587 54464884 -31230870 + AluY SINE Alu 1 296 -15 1630 166 3 33 chr15 54464884 54465054 -31230700 + AluJo SINE Alu 137 296 -16 832 200 0 0 chr15 54465054 54465189 -31230565 + AluSq/x SINE Alu 2 136 -176 1815 162 0 17 chr15 54465197 54465499 -31230255 + AluSx SINE Alu 8 304 -8 1829 246 27 13 chr15 54465499 54466146 -31229608 + L1M4b LINE L1 1560 2210 -4749 3684 180 131 21 chr15 54466148 54467023 -31228731 - MER52C LTR ERV1 0 1278 1 429 333 53 7 chr15 54467028 54467331 -31228423 + L1M4b LINE L1 2365 2681 -4457 361 273 49 14 chr15 54468078 54468221 -31227533 + LTR16C LTR ERVL 340 487 -4 685 318 29 13 chr15 54468438 54468819 -31226935 + L1MEd LINE L1 509 895 -5224 1400 87 16 0 chr15 54468823 54469043 -31226711 - AluY SINE Alu 0 316 94 1657 186 3 22 chr15 54469151 54469469 -31226285 - AluJo SINE Alu 0 312 1 1008 267 59 45 chr15 54469696 54470070 -31225684 - L1MC4a LINE L1 -1834 5974 5596 2088 112 20 0 chr15 54470070 54470364 -31225390 - AluSx SINE Alu -12 300 1 815 274 40 13 chr15 54470366 54470592 -31225162 - L1MC/D LINE L1 -2080 5728 5497 204 67 0 0 chr15 54470687 54470717 -31225037 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1932 144 6 6 chr15 54470787 54471099 -31224655 - AluSx SINE Alu 0 312 1 278 280 103 6 chr15 54471100 54471275 -31224479 - L1MC/D LINE L1 -840 5306 5115 2058 108 0 49 chr15 54471474 54471623 -31224131 + AluSg SINE Alu 1 127 -183 2351 67 0 25 chr15 54471623 54471938 -31223816 + AluY SINE Alu 1 307 -4 2058 108 0 49 chr15 54471938 54472112 -31223642 + AluSg SINE Alu 127 308 -2 1647 130 94 0 chr15 54473181 54473458 -31222296 + AluSx SINE Alu 1 303 -9 649 302 57 20 chr15 54474257 54474502 -31221252 - MIR SINE MIR -5 257 4 408 345 88 0 chr15 54475392 54475586 -31220168 - MIR SINE MIR -3 259 49 257 288 108 0 chr15 54476257 54476368 -31219386 - MIR SINE MIR -57 205 83 213 286 142 10 chr15 54476500 54476724 -31219030 + MIR SINE MIR 25 242 -20 1977 133 0 17 chr15 54478130 54478430 -31217324 - AluJb SINE Alu -17 295 1 971 123 0 70 chr15 54478430 54478601 -31217153 - FAM SINE Alu -6 43 1 237 328 0 0 chr15 54478892 54478953 -31216801 - L2 LINE L2 -3 3310 3250 2325 88 0 7 chr15 54481685 54481990 -31213764 - AluSx SINE Alu -9 303 1 492 303 68 6 chr15 54482210 54482372 -31213382 + Charlie8 DNA MER1_type 26 197 -2220 1655 183 10 7 chr15 54482716 54483011 -31212743 - AluJb SINE Alu -16 296 1 240 313 46 23 chr15 54483011 54483142 -31212612 - L3 LINE CR1 -36 1541 1408 359 335 65 60 chr15 54483231 54483409 -31212345 + L1MEc LINE L1 2024 2200 -4196 1795 146 0 13 chr15 54483409 54483711 -31212043 + AluJb SINE Alu 15 312 0 359 335 65 60 chr15 54483711 54483899 -31211855 + L1MEc LINE L1 2200 2392 -4004 277 200 45 100 chr15 54483922 54483990 -31211764 + HAL1 LINE L1 40 110 -2397 1657 157 31 7 chr15 54483990 54484277 -31211477 + AluJb SINE Alu 10 303 -9 2298 88 13 0 chr15 54484278 54484586 -31211168 + AluSp SINE Alu 1 312 -1 277 200 45 100 chr15 54484586 54484625 -31211129 + HAL1 LINE L1 109 143 -2364 214 327 19 28 chr15 54484913 54485020 -31210734 + MIR3 SINE MIR 81 186 -22 836 161 0 7 chr15 54485052 54485189 -31210565 + AluJo SINE Alu 2 137 -175 1607 182 25 0 chr15 54485193 54485473 -31210281 + AluJo SINE Alu 7 293 -19 448 325 206 18 chr15 54485896 54486449 -31209305 - L2 LINE L2 -1768 1546 890 2202 108 3 0 chr15 54487279 54487585 -31208169 + AluSx SINE Alu 1 307 -5 218 287 17 9 chr15 54487981 54488096 -31207658 + (TG)n Simple_repeat Simple_repeat 1 116 0 187 371 10 10 chr15 54490067 54490164 -31205590 + L2 LINE L2 339 435 -2879 186 43 0 0 chr15 54490752 54490775 -31204979 + (TA)n Simple_repeat Simple_repeat 1 23 0 2365 61 0 0 chr15 54493363 54493656 -31202098 + AluY SINE Alu 1 293 -18 301 278 250 46 chr15 54493835 54494119 -31201635 + L2 LINE L2 2903 3244 -28 1947 150 0 6 chr15 54494298 54494611 -31201143 + AluJo SINE Alu 1 311 -1 207 0 0 0 chr15 54494940 54494963 -31200791 + (A)n Simple_repeat Simple_repeat 1 23 0 1862 127 3 24 chr15 54495989 54496280 -31199474 - AluJb SINE Alu -19 293 9 1093 128 0 12 chr15 54496297 54496469 -31199285 - FRAM SINE Alu -3 173 4 411 101 0 0 chr15 54496470 54496539 -31199215 + MER2 DNA MER2_type 125 193 -152 1499 170 42 17 chr15 54496545 54496834 -31198920 - AluJo SINE Alu -2 310 15 476 274 46 17 chr15 54498447 54498622 -31197132 - MIR3 SINE MIR -26 182 3 301 363 70 55 chr15 54499398 54499852 -31195902 + L2 LINE L2 2812 3272 0 271 301 32 73 chr15 54502692 54502815 -31192939 + MIR3 SINE MIR 85 202 -6 500 258 114 74 chr15 54502991 54503079 -31192675 - MER34 LTR ERV1 0 585 502 1829 113 81 0 chr15 54503079 54503363 -31192391 + AluSx SINE Alu 1 307 -5 500 258 114 74 chr15 54503363 54503797 -31191957 - MER34 LTR ERV1 -83 502 1 484 311 131 31 chr15 54503978 54504341 -31191413 + L1MC4a LINE L1 5497 5903 -1905 1440 147 128 42 chr15 54504341 54504421 -31191333 + MER58B DNA MER1_type 2 74 -2346 1811 152 6 22 chr15 54504421 54504737 -31191017 - AluJb SINE Alu -1 311 1 1440 147 128 42 chr15 54504737 54504969 -31190785 + MER58B DNA MER1_type 74 341 0 484 311 131 31 chr15 54504969 54504994 -31190760 + L1MC4a LINE L1 5903 5924 -1884 198 91 0 0 chr15 54505140 54505173 -31190581 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 257 281 50 62 chr15 54505704 54505864 -31189890 - MIR3 SINE MIR -24 184 27 742 235 53 0 chr15 54506620 54506790 -31188964 - MER3 DNA MER1_type -11 198 20 695 138 8 46 chr15 54506824 54506954 -31188800 + MER20 DNA MER1_type 3 127 -92 2144 117 10 0 chr15 54507319 54507627 -31188127 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr15 54507884 54507907 -31187847 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 826 176 0 0 chr15 54508473 54508604 -31187150 - FLAM_C SINE Alu -1 132 2 705 190 0 0 chr15 54708997 54709171 -30986583 + (TG)n Simple_repeat Simple_repeat 2 175 0 444 128 0 0 chr15 54709542 54709620 -30986134 + (TG)n Simple_repeat Simple_repeat 1 78 0 185 357 63 21 chr15 54709697 54709840 -30985914 - L2 LINE L2 -124 3148 3000 1718 158 40 14 chr15 54710015 54710120 -30985634 + MER46B DNA MER2_type 4 105 -2626 2202 93 3 13 chr15 54710120 54710422 -30985332 - AluSx SINE Alu -13 299 1 1718 158 40 14 chr15 54710422 54710663 -30985091 + MER46B DNA MER2_type 105 234 -2 205 339 0 0 chr15 54711158 54711214 -30984540 + MIR SINE MIR 77 132 -76 307 227 15 0 chr15 54711843 54711906 -30983848 + MIR SINE MIR 87 116 -92 1478 139 22 0 chr15 54711906 54712129 -30983625 + AluJb SINE Alu 1 228 -84 307 227 15 0 chr15 54712129 54712160 -30983594 + MIR SINE MIR 116 145 -63 287 273 18 64 chr15 54713671 54713781 -30981973 + MIR3 SINE MIR 84 188 -20 221 307 34 73 chr15 54716617 54716798 -30978956 - MIR SINE MIR -59 149 17 326 295 0 29 chr15 54717138 54717243 -30978511 - MIR SINE MIR -118 144 43 718 244 163 10 chr15 54717271 54717480 -30978274 + MIR SINE MIR 12 252 -10 2500 63 0 0 chr15 54717780 54718083 -30977671 - AluSg SINE Alu -7 303 1 1000 226 53 0 chr15 54718576 54718784 -30976970 - MER20 DNA MER1_type 0 219 1 2219 114 64 17 chr15 54718918 54719276 -30976478 - THE1C LTR MaLR 0 375 1 758 127 16 24 chr15 54719311 54719437 -30976317 - AluSg/x SINE Alu -4 306 182 1557 127 0 0 chr15 54719685 54719905 -30975849 + AluSc SINE Alu 1 220 -89 928 224 33 0 chr15 54720541 54720755 -30974999 - AluJo SINE Alu -14 298 78 189 249 12 77 chr15 54721095 54721216 -30974538 - MIR SINE MIR -69 139 81 362 224 88 40 chr15 54722981 54723106 -30972648 + MIR3 SINE MIR 13 143 -65 224 221 23 105 chr15 54723348 54723405 -30972349 - MER91A DNA MER1_type -115 81 32 2451 231 40 19 chr15 54723405 54723763 -30971991 + MLT1F LTR MaLR 2 376 -166 2273 115 0 0 chr15 54723763 54724068 -30971686 - AluSx SINE Alu -7 305 1 2451 231 40 19 chr15 54724068 54724237 -30971517 + MLT1F LTR MaLR 376 540 -2 224 221 23 105 chr15 54724237 54724265 -30971489 - MER91A DNA MER1_type -164 32 3 408 200 70 52 chr15 54724349 54724464 -30971290 - L2 LINE L2 0 3313 3197 696 320 72 31 chr15 54724470 54724858 -30970896 - L2 LINE L2 -795 2519 2116 735 167 88 10 chr15 54724873 54724986 -30970768 - L1MC4 LINE L1 -2 8040 7937 1998 128 6 41 chr15 54724986 54725170 -30970584 - AluSc SINE Alu -1 308 138 2342 56 0 46 chr15 54725170 54725494 -30970260 - AluY SINE Alu -2 309 1 1998 128 6 41 chr15 54725494 54725628 -30970126 - AluSc SINE Alu -171 138 1 735 167 88 10 chr15 54725628 54725706 -30970048 - L1MC4 LINE L1 -105 7937 7834 1231 166 36 32 chr15 54725708 54725955 -30969799 - AluJo SINE Alu -2 310 63 1581 208 107 40 chr15 54725956 54726338 -30969416 - L1MC4 LINE L1 -210 7832 7406 2000 130 0 37 chr15 54726338 54726660 -30969094 + AluSx SINE Alu 1 310 -2 1581 208 107 40 chr15 54726660 54726782 -30968972 - L1MC4 LINE L1 -636 7406 7294 297 339 0 17 chr15 54728730 54728848 -30966906 + MIR SINE MIR 35 150 -58 409 312 81 6 chr15 54730441 54730614 -30965140 + MIR SINE MIR 75 260 -2 180 216 0 0 chr15 54731621 54731658 -30964096 - MIR SINE MIR -108 154 118 194 0 39 0 chr15 54732333 54732359 -30963395 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2173 88 0 0 chr15 54732363 54732637 -30963117 - AluSg SINE Alu -36 274 1 216 299 81 0 chr15 54733440 54733527 -30962227 - L2 LINE L2 -30 3242 3149 373 311 40 7 chr15 54733569 54733720 -30962034 + MIR3 SINE MIR 29 184 -24 212 213 0 33 chr15 54734486 54734547 -30961207 + GA-rich Low_complexity Low_complexity 3 61 0 1907 161 0 10 chr15 54734694 54735005 -30960749 + AluJb SINE Alu 1 308 -4 474 143 0 0 chr15 54735543 54735613 -30960141 - AluJo SINE Alu -21 291 222 1078 145 17 6 chr15 54735613 54735785 -30959969 - AluJo SINE Alu -138 174 1 384 145 29 0 chr15 54736451 54736520 -30959234 - L2 LINE L2 0 3272 3202 234 62 0 0 chr15 54737606 54737638 -30958116 + (TC)n Simple_repeat Simple_repeat 2 33 0 229 296 74 0 chr15 54738221 54738302 -30957452 - L2 LINE L2 -49 3223 3137 283 330 10 0 chr15 54738333 54738430 -30957324 - MIR SINE MIR -137 125 28 289 236 65 0 chr15 54738466 54738590 -30957164 + MIR SINE MIR 82 214 -48 225 223 182 58 chr15 54738768 54738889 -30956865 - MIR3 SINE MIR -17 191 56 524 245 88 42 chr15 54739189 54739381 -30956373 - MIR SINE MIR -31 231 31 303 282 19 19 chr15 54739461 54739564 -30956190 + MIR SINE MIR 41 143 -65 219 246 0 0 chr15 54739564 54739621 -30956133 + (TG)n Simple_repeat Simple_repeat 2 58 0 4375 181 46 42 chr15 54740363 54741313 -30954441 + LTR13 LTR ERVK 1 954 0 203 281 0 16 chr15 54741673 54741737 -30954017 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 472 262 101 20 chr15 54741894 54742043 -30953711 - MIR3 SINE MIR -45 163 3 291 262 187 19 chr15 54742904 54743065 -30952689 - MIR3 SINE MIR -64 144 4 248 77 26 0 chr15 54743403 54743442 -30952312 + (CGGGGG)n Simple_repeat Simple_repeat 3 42 0 296 257 24 19 chr15 54745054 54745159 -30950595 - MIR3 SINE MIR -38 170 65 1588 159 3 24 chr15 54745194 54745484 -30950270 - AluJo SINE Alu -17 295 12 2462 61 0 0 chr15 54746725 54747021 -30948733 + AluY SINE Alu 1 296 -15 538 257 32 70 chr15 54747087 54747238 -30948516 + MIR SINE MIR 12 167 -95 2510 77 53 3 chr15 54747238 54747576 -30948178 + THE1A LTR MaLR 1 355 0 11906 92 13 3 chr15 54747577 54749140 -30946614 + THE1A-int LTR MaLR 2 1580 0 2777 82 6 3 chr15 54749140 54749494 -30946260 + THE1A LTR MaLR 1 355 0 538 257 32 70 chr15 54749494 54749526 -30946228 + MIR SINE MIR 165 191 -71 689 306 101 87 chr15 54749536 54750203 -30945551 + L1MC5 LINE L1 3963 7924 -37 2122 117 3 0 chr15 54750244 54750535 -30945219 + AluSx SINE Alu 5 296 -16 2319 86 0 6 chr15 54750537 54750850 -30944904 + AluY SINE Alu 1 311 0 898 123 8 0 chr15 54750870 54751000 -30944754 + AluSq/x SINE Alu 1 131 -181 1158 346 89 47 chr15 54751002 54751204 -30944550 + L1MC5 LINE L1 4389 4581 -3380 2102 194 6 6 chr15 54751204 54751569 -30944185 - MLT1A1 LTR MaLR 0 365 1 1158 346 89 47 chr15 54751569 54752405 -30943349 + L1MC5 LINE L1 4581 7779 -182 180 152 0 0 chr15 54753165 54753198 -30942556 + A-rich Low_complexity Low_complexity 1 33 0 1243 143 0 63 chr15 54753298 54753521 -30942233 - AluY SINE Alu -20 291 83 726 76 0 0 chr15 54753624 54753716 -30942038 - AluS SINE Alu -221 92 1 1417 182 35 18 chr15 54753727 54754013 -30941741 - AluJb SINE Alu 0 312 22 973 146 60 0 chr15 54754384 54754583 -30941171 - MER2 DNA MER2_type -134 211 1 327 294 9 0 chr15 54754913 54755022 -30940732 + L1ME3A LINE L1 6049 6158 -12 1569 153 0 15 chr15 54755668 54755929 -30939825 + AluJb SINE Alu 42 298 -14 239 354 25 13 chr15 54756591 54756670 -30939084 + MIR SINE MIR 20 99 -109 200 236 0 55 chr15 54756851 54756906 -30938848 + MIR SINE MIR 157 208 -54 1359 226 19 3 chr15 54757608 54757918 -30937836 - MER58B DNA MER1_type 0 341 27 264 226 191 52 chr15 54762230 54762345 -30933409 - MIR SINE MIR -96 166 36 1718 114 0 0 chr15 54764246 54764466 -30931288 + AluSc SINE Alu 1 220 -89 1503 195 76 0 chr15 54765102 54765379 -30930375 - AluJo SINE Alu -14 298 1 904 134 0 13 chr15 54765701 54765850 -30929904 + MSTB LTR MaLR 1 147 -279 744 118 9 9 chr15 54765850 54765986 -30929768 - AluSg/x SINE Alu 0 312 193 1138 162 131 0 chr15 54765987 54766209 -30929545 + MSTB LTR MaLR 139 389 -37 2061 123 11 0 chr15 54766209 54766493 -30929261 + AluSq SINE Alu 1 287 -26 1320 138 0 5 chr15 54766493 54766689 -30929065 + AluSg/x SINE Alu 108 302 -10 321 106 0 0 chr15 54766689 54766736 -30929018 + MSTB LTR MaLR 386 432 0 182 287 117 32 chr15 54766758 54766852 -30928902 + MIR SINE MIR 30 131 -77 661 183 82 27 chr15 54768593 54768805 -30926949 + L1MB7 LINE L1 5771 5994 -221 21 57 0 0 chr15 54768857 54768892 -30926862 + AT_rich Low_complexity Low_complexity 1 35 0 368 280 0 16 chr15 54769207 54769332 -30926422 - L1ME LINE L1 -464 5657 5535 401 209 78 70 chr15 54769389 54769437 -30926317 - L1ME LINE L1 -799 5443 5397 2293 109 0 26 chr15 54769437 54769750 -30926004 - AluSx SINE Alu -7 305 1 401 209 78 70 chr15 54769750 54769879 -30925875 - L1ME LINE L1 -845 5397 5271 1676 181 7 11 chr15 54769930 54770206 -30925548 - AluJo SINE Alu -37 275 1 884 187 7 7 chr15 54770949 54771104 -30924650 - MER5A DNA MER1_type -33 156 2 2111 124 33 13 chr15 54771425 54771731 -30924023 - AluSx SINE Alu 0 312 1 26 74 0 0 chr15 54772071 54772125 -30923629 + AT_rich Low_complexity Low_complexity 1 54 0 377 309 66 11 chr15 54774330 54774511 -30921243 + MIR SINE MIR 2 192 -70 392 196 130 29 chr15 54774695 54774837 -30920917 + MIR3 SINE MIR 9 160 -64 2380 114 0 0 chr15 54775600 54775906 -30919848 - AluSx SINE Alu -6 306 1 344 289 141 7 chr15 54776565 54776714 -30919040 + MIR3 SINE MIR 31 199 -9 323 278 87 9 chr15 54776720 54776835 -30918919 + L2 LINE L2 3185 3308 -5 249 33 0 0 chr15 54778225 54778255 -30917499 + (TG)n Simple_repeat Simple_repeat 2 31 0 521 182 123 62 chr15 54778436 54778620 -30917134 + MIR SINE MIR 16 205 -57 193 250 231 0 chr15 54779225 54779277 -30916477 + MIR SINE MIR 88 151 -111 208 380 0 0 chr15 54779954 54780091 -30915663 + GA-rich Low_complexity Low_complexity 3 139 0 211 256 0 0 chr15 54780200 54780243 -30915511 + MIR SINE MIR 108 150 -58 1655 164 69 0 chr15 54780785 54781067 -30914687 + AluSx SINE Alu 2 301 0 360 274 158 21 chr15 54781068 54781258 -30914496 + MIR SINE MIR 41 256 -6 1065 159 6 0 chr15 54781986 54782143 -30913611 + 7SLRNA srpRNA srpRNA 92 249 -71 300 225 19 61 chr15 54788714 54788826 -30906928 - MIR3 SINE MIR -38 170 59 1716 140 13 30 chr15 54788859 54789159 -30906595 - AluJo SINE Alu -17 295 1 4371 203 22 22 chr15 54789975 54790388 -30905366 - L1 LINE L1 -2369 5196 4784 2038 111 18 7 chr15 54790388 54790709 -30905045 - AluSg SINE Alu 0 324 1 4371 203 22 22 chr15 54790709 54791400 -30904354 - L1 LINE L1 -2780 4785 4091 441 197 68 17 chr15 54791460 54791577 -30904177 + MER63 DNA MER1_type 1 749 -313 10912 158 19 42 chr15 54791580 54793634 -30902120 - L1 LINE L1 -5535 2030 23 480 242 67 0 chr15 54793635 54793755 -30901999 - MLT1A2 LTR MaLR -246 128 1 1248 238 60 72 chr15 54794546 54795047 -30900707 - MER77 LTR ERV1 -57 548 54 185 287 0 7 chr15 54795289 54795432 -30900322 + (TG)n Simple_repeat Simple_repeat 2 143 0 1899 128 59 7 chr15 54795466 54795739 -30900015 + AluSx SINE Alu 1 287 -25 402 244 0 0 chr15 54795761 54795839 -30899915 + FLAM_A SINE Alu 6 83 -59 773 271 109 18 chr15 54796519 54796740 -30899014 + MIR SINE MIR 1 241 -21 1376 232 26 0 chr15 54797079 54797419 -30898335 + L1ME3 LINE L1 5794 6142 -20 1305 161 41 140 chr15 54797424 54797839 -30897915 - MLT1A2 LTR MaLR 0 374 1 729 182 23 8 chr15 54798771 54798903 -30896851 - MER94 DNA DNA 0 134 1 210 278 185 28 chr15 54799530 54799638 -30896116 - MIR SINE MIR -66 142 18 507 236 9 0 chr15 54800358 54800468 -30895286 + MIR3 SINE MIR 50 160 -48 2204 127 0 16 chr15 54800479 54800795 -30894959 - AluSx SINE Alu -1 311 1 716 146 42 0 chr15 54800851 54800987 -30894767 - L1MA9 LINE L1 0 6312 6152 180 0 0 0 chr15 54800987 54801007 -30894747 + (TTA)n Simple_repeat Simple_repeat 2 21 0 716 146 42 0 chr15 54801007 54801039 -30894715 - L1MA9 LINE L1 -160 6152 6123 1962 99 60 11 chr15 54801129 54801411 -30894343 + AluSx SINE Alu 1 296 -16 1381 162 154 4 chr15 54801417 54801676 -30894078 + AluJb SINE Alu 1 298 -14 1589 110 12 0 chr15 54801676 54801930 -30893824 + L1MA5 LINE L1 6042 6298 -2 498 145 57 2 chr15 54801942 54802047 -30893707 - L1MA7 LINE L1 -152 6148 6041 2888 244 56 46 chr15 54802127 54802582 -30893172 - HAL1 LINE L1 -36 2471 2022 2215 125 0 3 chr15 54802582 54802877 -30892877 - AluSg SINE Alu -16 294 1 2888 244 56 46 chr15 54802877 54803577 -30892177 - HAL1 LINE L1 -485 2022 1304 338 0 24 0 chr15 54803983 54804025 -30891729 + (TG)n Simple_repeat Simple_repeat 2 44 0 1573 199 38 58 chr15 54804115 54804511 -30891243 + MLT1B LTR MaLR 3 390 0 336 284 62 68 chr15 54804653 54804945 -30890809 + MLT1K LTR MaLR 293 582 -6 739 90 90 0 chr15 54805807 54805929 -30889825 - MER85 DNA T2_type -1 138 6 1913 179 13 0 chr15 54806255 54806651 -30889103 + AluJb SINE Alu 1 400 0 800 179 22 45 chr15 54806828 54807007 -30888747 - MER5B DNA MER1_type -3 175 1 195 210 145 16 chr15 54807209 54807271 -30888483 + MIR3 SINE MIR 1 70 -138 611 303 221 12 chr15 54807713 54808234 -30887520 + L2 LINE L2 2643 3285 -28 498 248 0 0 chr15 54808783 54808908 -30886846 - MER53 DNA DNA -64 125 1 255 368 53 0 chr15 54808963 54809058 -30886696 - L2 LINE L2 -48 3224 3125 637 254 60 118 chr15 54809135 54809187 -30886567 + L1ME LINE L1 4789 4842 -1304 2281 127 0 0 chr15 54809187 54809487 -30886267 - AluSg SINE Alu -10 300 1 637 254 60 118 chr15 54809487 54809848 -30885906 + L1ME LINE L1 4842 5178 -968 512 294 17 17 chr15 54809969 54810146 -30885608 + L1ME LINE L1 5257 5433 -731 2802 135 12 2 chr15 54810159 54810581 -30885173 - MSTA LTR MaLR 0 428 3 363 255 29 0 chr15 54810583 54810685 -30885069 + L1ME LINE L1 5499 5603 -518 2611 124 60 0 chr15 54811006 54811408 -30884346 - MSTB LTR MaLR 0 426 1 293 323 132 0 chr15 54811760 54811949 -30883805 + MIR SINE MIR 20 233 -29 276 306 68 20 chr15 54812153 54812300 -30883454 + MIR3 SINE MIR 37 190 -18 424 209 137 115 chr15 54813111 54813231 -30882523 + MIR3 SINE MIR 20 147 -61 636 220 96 11 chr15 54813231 54813408 -30882346 + MER117 DNA MER1_type 2 193 -4 424 209 137 115 chr15 54813408 54813469 -30882285 + MIR3 SINE MIR 147 205 -3 22 0 0 0 chr15 54813555 54813577 -30882177 + AT_rich Low_complexity Low_complexity 1 22 0 1713 116 86 192 chr15 54814192 54814779 -30880975 - L1MB3 LINE L1 0 6183 5655 1840 174 10 6 chr15 54814838 54815149 -30880605 - AluJo SINE Alu 0 312 1 364 271 43 43 chr15 54815165 54815305 -30880449 - L1ME3A LINE L1 -223 5947 5808 662 269 140 15 chr15 54815307 54815571 -30880183 + L1ME LINE L1 5484 5780 -382 2766 196 65 36 chr15 54815610 54815846 -30879908 - L1 LINE L1 -2049 4097 3869 2385 109 0 0 chr15 54815846 54816157 -30879597 - AluSx SINE Alu -1 311 1 2766 196 65 36 chr15 54816157 54816795 -30878959 - L1 LINE L1 -2277 3869 3115 703 217 82 16 chr15 54817119 54817303 -30878451 + MER117 DNA MER1_type 2 197 0 1357 164 16 25 chr15 54817475 54817719 -30878035 - AluJo SINE Alu -27 285 44 371 255 52 130 chr15 54817719 54817911 -30877843 - MIR SINE MIR -64 198 22 181 156 0 111 chr15 54819110 54819155 -30876599 - MIR SINE MIR -106 156 117 430 144 33 0 chr15 54819175 54819265 -30876489 + GA-rich Low_complexity Low_complexity 3 95 0 406 259 111 9 chr15 54819268 54819376 -30876378 - MIR SINE MIR -133 129 11 375 23 0 0 chr15 54819682 54819726 -30876028 + (CA)n Simple_repeat Simple_repeat 2 45 0 988 271 4 20 chr15 54820309 54820560 -30875194 + MIR SINE MIR 16 262 0 683 232 63 38 chr15 54821116 54821353 -30874401 + LTR33 LTR ERVL 21 263 -258 282 293 72 33 chr15 54821361 54821542 -30874212 - MER5C DNA MER1_type -8 316 129 2264 92 7 3 chr15 54822019 54822312 -30873442 + AluSx SINE Alu 1 294 -18 1540 134 119 29 chr15 54823030 54823307 -30872447 - AluJo SINE Alu -10 302 1 429 282 0 53 chr15 54823451 54823582 -30872172 - MER5C DNA MER1_type -200 124 1 309 278 28 0 chr15 54823608 54823680 -30872074 + LTR33 LTR ERVL 313 386 -135 184 363 0 0 chr15 54823786 54823866 -30871888 + L2 LINE L2 3232 3311 -2 440 328 117 12 chr15 54823998 54824169 -30871585 - MER91A DNA MER1_type 0 196 8 2144 139 3 0 chr15 54825002 54825311 -30870443 - AluSq SINE Alu -3 310 1 288 374 95 6 chr15 54825536 54825715 -30870039 - MIR3 SINE MIR -11 197 3 733 256 66 63 chr15 54825742 54826106 -30869648 - L2 LINE L2 0 3313 2949 264 111 0 0 chr15 54826117 54826153 -30869601 + MADE1 DNA Mariner 45 80 0 1132 294 78 47 chr15 54826254 54826360 -30869394 - L2 LINE L2 -498 2816 2715 2106 141 3 0 chr15 54826360 54826666 -30869088 - AluSq SINE Alu -6 307 1 1132 294 78 47 chr15 54826666 54827114 -30868640 - L2 LINE L2 -599 2715 2236 2256 112 3 0 chr15 54827114 54827418 -30868336 + AluSq SINE Alu 1 305 -8 1132 294 78 47 chr15 54827418 54827519 -30868235 - L2 LINE L2 -1078 2236 2140 248 241 0 0 chr15 54827591 54827649 -30868105 + LTR50 LTR ERVL 1 58 -737 419 224 149 22 chr15 54827680 54827814 -30867940 + LTR50 LTR ERVL 138 288 -507 467 255 25 56 chr15 54827971 54828066 -30867688 - LTR67 LTR ERVL -397 160 70 3574 172 39 16 chr15 54828066 54828712 -30867042 + MER67B LTR ERV1 1 661 0 467 255 25 56 chr15 54828712 54828777 -30866977 - LTR67 LTR ERVL -487 70 5 477 319 95 33 chr15 54829059 54829332 -30866422 - MLT1J LTR MaLR -176 335 46 1108 256 125 3 chr15 54829446 54829758 -30865996 + LTR16C LTR ERVL 141 490 -1 2364 81 16 13 chr15 54829897 54830206 -30865548 + AluSx SINE Alu 1 310 -2 415 178 20 70 chr15 54831282 54831419 -30864335 - L1ME4a LINE L1 -13 6071 1210 2361 93 0 0 chr15 54831536 54831837 -30863917 + AluSc SINE Alu 1 301 -8 345 112 29 176 chr15 54831873 54831940 -30863814 - L1MC5 LINE L1 -228 7733 7704 1676 184 45 0 chr15 54831940 54832228 -30863526 + AluJb SINE Alu 3 303 -9 345 112 29 176 chr15 54832228 54832330 -30863424 - L1MC5 LINE L1 -257 7704 7589 28 61 0 0 chr15 54832878 54832927 -30862827 + AT_rich Low_complexity Low_complexity 1 49 0 310 330 118 9 chr15 54832929 54833074 -30862680 + MIR SINE MIR 25 183 -79 223 271 0 0 chr15 54833081 54833129 -30862625 + L2 LINE L2 3266 3313 0 278 245 118 39 chr15 54833236 54833338 -30862416 - L2 LINE L2 -1 3312 3203 1117 119 16 164 chr15 54833409 54833653 -30862101 - MER3 DNA MER1_type -1 208 1 372 332 75 86 chr15 54834117 54834385 -30861369 - L2 LINE L2 -4 3268 3004 2679 90 5 19 chr15 54834443 54834811 -30860943 - L1PA14 LINE L1 -2 6159 5797 594 208 60 98 chr15 54835295 54835478 -30860276 - MER69A DNA AcHobo -1 176 1 199 346 143 25 chr15 54835503 54835783 -30859971 + L2 LINE L2 1699 2011 -1303 2182 103 3 10 chr15 54836504 54836794 -30858960 + AluSq SINE Alu 1 288 -25 879 239 46 14 chr15 54836803 54837021 -30858733 - MIR SINE MIR 0 262 38 19563 87 16 1 chr15 54838639 54841998 -30853756 + L1PA7 LINE L1 2782 6154 0 465 323 119 20 chr15 54842873 54843167 -30852587 + MER102b DNA MER1_type 19 341 0 267 342 90 18 chr15 54843173 54843204 -30852550 + MIR3 SINE MIR 14 41 -167 2009 126 13 7 chr15 54843204 54843513 -30852241 + AluSx SINE Alu 1 311 -1 267 342 90 18 chr15 54843513 54843592 -30852162 + MIR3 SINE MIR 41 132 -76 1279 170 24 147 chr15 54843818 54844159 -30851595 - AluYb8 SINE Alu -8 300 2 691 246 26 73 chr15 54844385 54844617 -30851137 - MIR SINE MIR -5 257 37 1901 239 142 51 chr15 54845180 54846336 -30849418 + L1MC4a LINE L1 6452 7709 -99 254 267 74 67 chr15 54846595 54846652 -30849102 + L1ME LINE L1 5697 5752 -369 2667 24 0 0 chr15 54846652 54846947 -30848807 + AluY SINE Alu 2 296 -15 254 267 74 67 chr15 54846947 54847024 -30848730 + L1ME LINE L1 5752 5832 -289 1606 153 46 0 chr15 54848018 54848300 -30847454 - AluJb SINE Alu -16 296 2 678 188 56 12 chr15 54848684 54848844 -30846910 + MER5A DNA MER1_type 21 187 -2 540 176 192 5 chr15 54848967 54849160 -30846594 - Charlie1b DNA MER1_type -1 522 294 792 144 30 23 chr15 54849226 54849358 -30846396 - FLAM_C SINE Alu 0 133 1 1175 160 97 8 chr15 54849819 54850056 -30845698 - Charlie1b DNA MER1_type -264 259 2 234 321 30 45 chr15 54850056 54850187 -30845567 + MLT1L LTR MaLR 147 275 -340 284 139 23 0 chr15 54850329 54850372 -30845382 + MLT1L LTR MaLR 496 539 -76 22 56 0 0 chr15 54852361 54852397 -30843357 + AT_rich Low_complexity Low_complexity 1 36 0 185 0 40 0 chr15 54852470 54852495 -30843259 + (TA)n Simple_repeat Simple_repeat 2 27 0 1903 126 3 53 chr15 54852495 54852797 -30842957 - AluSx SINE Alu -25 287 1 913 160 84 9 chr15 54853185 54853398 -30842356 + L1MA8 LINE L1 6063 6291 0 793 227 27 0 chr15 54853942 54854092 -30841662 + FAM SINE Alu 3 156 -19 2022 76 72 0 chr15 54854261 54854552 -30841202 + AluY SINE Alu 6 315 0 1367 237 135 37 chr15 54855471 54856202 -30839552 - L1MC4a LINE L1 -1691 6100 5298 2121 108 7 3 chr15 54856292 54856579 -30839175 + AluSp SINE Alu 1 288 -25 709 62 0 31 chr15 54856579 54856675 -30839079 - AluY SINE Alu -19 292 200 326 282 122 58 chr15 54857060 54857132 -30838622 - L1MC4a LINE L1 -2976 3153 3087 1619 173 28 7 chr15 54857132 54857296 -30838458 - AluSx SINE Alu -23 289 115 192 40 0 0 chr15 54857296 54857321 -30838433 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1619 173 28 7 chr15 54857321 54857439 -30838315 - AluSx SINE Alu -197 115 1 326 282 122 58 chr15 54857439 54857710 -30838044 - L1MC4a LINE L1 -3042 3087 2788 794 282 138 24 chr15 54857849 54858589 -30837165 - L1M4 LINE L1 -3194 2952 2129 444 259 76 105 chr15 54858648 54858846 -30836908 - L1MC4a LINE L1 -4974 1145 943 1571 148 30 57 chr15 54858846 54859143 -30836611 - AluJo SINE Alu -19 293 5 444 259 76 105 chr15 54859143 54859546 -30836208 - L1MC4a LINE L1 -5176 943 561 646 179 99 26 chr15 54860067 54860218 -30835536 + MIR SINE MIR 37 198 -64 1649 162 16 13 chr15 54863335 54863643 -30832111 + L1MB7 LINE L1 5876 6184 0 22 23 0 45 chr15 54864831 54864848 -30830906 + AT_rich Low_complexity Low_complexity 1 17 -25 1832 100 96 0 chr15 54864848 54865108 -30830646 - AluSx SINE Alu -27 285 1 22 23 0 45 chr15 54865108 54865134 -30830620 + AT_rich Low_complexity Low_complexity 17 42 0 2249 96 10 0 chr15 54865297 54865588 -30830166 + AluSx SINE Alu 1 294 -18 2168 100 17 3 chr15 54866302 54866593 -30829161 + AluSc SINE Alu 5 299 -10 27 81 0 0 chr15 54866688 54866750 -30829004 + AT_rich Low_complexity Low_complexity 1 62 0 1696 176 37 3 chr15 54866764 54867060 -30828694 + AluJb SINE Alu 1 306 -6 264 167 0 0 chr15 54867830 54867878 -30827876 + (TG)n Simple_repeat Simple_repeat 2 49 0 696 169 197 0 chr15 54867942 54868084 -30827670 + MER5A DNA MER1_type 2 171 -18 912 116 0 8 chr15 54868111 54868240 -30827514 + FLAM_C SINE Alu 1 128 -5 601 299 72 45 chr15 54869551 54869885 -30825869 - L3 LINE CR1 -181 1396 1054 1967 100 53 37 chr15 54870449 54870585 -30825169 + AluSx SINE Alu 1 133 -179 2227 119 0 0 chr15 54870585 54870880 -30824874 + AluSg SINE Alu 1 295 -15 1967 100 53 37 chr15 54870880 54871042 -30824712 + AluSx SINE Alu 133 304 -8 1334 191 117 24 chr15 54871223 54871564 -30824190 - MLT1B LTR MaLR 0 390 18 478 249 114 30 chr15 54871619 54871856 -30823898 - L1ME4a LINE L1 -254 5867 5611 385 219 43 53 chr15 54871876 54872063 -30823691 - L1MC4 LINE L1 -14 8028 7844 3222 137 47 21 chr15 54873479 54873916 -30821838 + L1MA8 LINE L1 5656 6115 -176 1907 142 0 44 chr15 54873916 54874233 -30821521 - AluSx SINE Alu -9 303 1 3222 137 47 21 chr15 54874233 54874415 -30821339 + L1MA8 LINE L1 6115 6291 0 467 308 39 13 chr15 54874458 54874614 -30821140 + MIR SINE MIR 61 220 -42 238 220 220 79 chr15 54874801 54874978 -30820776 - MIR SINE MIR 0 262 61 1952 153 3 7 chr15 54875506 54875807 -30819947 + AluJo SINE Alu 6 305 -7 3864 123 118 10 chr15 54875891 54876341 -30819413 - Tigger3(Golem) DNA MER2_type 0 3029 2629 2126 118 14 3 chr15 54876341 54876637 -30819117 + AluSx SINE Alu 1 299 -13 3864 123 118 10 chr15 54876637 54877228 -30818526 - Tigger3(Golem) DNA MER2_type -400 2629 43 260 311 78 24 chr15 54877358 54877525 -30818229 - L2 LINE L2 -206 3066 2891 442 178 0 14 chr15 54878441 54878514 -30817240 - MER2 DNA MER2_type -1 344 273 1000 271 81 63 chr15 54878523 54878630 -30817124 - L2 LINE L2 -560 2754 2650 420 191 0 0 chr15 54878630 54878724 -30817030 + L1MA8 LINE L1 6192 6285 -6 1000 271 81 63 chr15 54878724 54879169 -30816585 - L2 LINE L2 -664 2650 2192 272 287 81 0 chr15 54880214 54880301 -30815453 + MIR SINE MIR 141 234 -28 802 224 83 18 chr15 54880644 54880872 -30814882 - MER31B LTR ERV1 -4 462 220 633 209 72 7 chr15 54881232 54881385 -30814369 - MER31B LTR ERV1 -84 382 220 2341 131 106 126 chr15 54882056 54882765 -30812989 - LTR34 LTR ERV1 -4 695 1 187 257 100 29 chr15 54882917 54882987 -30812767 + MIR SINE MIR 33 107 -101 6471 106 31 34 chr15 54883111 54883230 -30812524 + L1MA3 LINE L1 4980 5098 -1207 2460 72 0 20 chr15 54883230 54883534 -30812220 + AluY SINE Alu 1 298 -13 6471 106 31 34 chr15 54883534 54884759 -30810995 + L1MA3 LINE L1 5098 6305 0 2803 197 38 15 chr15 54884748 54886320 -30809434 + L1MA4 LINE L1 4358 6019 -281 * 393 138 58 0 chr15 54886330 54886417 -30809337 + L1MB3 LINE L1 6090 6181 -2 1658 172 27 17 chr15 54886549 54886846 -30808908 + AluJo SINE Alu 1 300 -12 2083 149 3 0 chr15 54886865 54887166 -30808588 + AluSx SINE Alu 1 302 -10 2221 114 3 0 chr15 54887437 54887735 -30808019 + AluSx SINE Alu 1 299 -13 365 295 177 35 chr15 54889010 54889238 -30806516 - L3b LINE CR1 -94 1489 1210 2127 75 39 52 chr15 54889238 54889544 -30806210 - AluSg SINE Alu -8 302 1 365 295 177 35 chr15 54889544 54889603 -30806151 - L3b LINE CR1 -373 1210 1161 1728 168 0 26 chr15 54889609 54889774 -30805980 - AluJo SINE Alu -17 295 127 324 64 0 0 chr15 54889774 54889821 -30805933 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2596 7 0 0 chr15 54889821 54890105 -30805649 - AluYa5 SINE Alu -27 284 1 1728 168 0 26 chr15 54890105 54890241 -30805513 - AluJo SINE Alu -183 129 1 2353 68 0 26 chr15 54890363 54890671 -30805083 - AluY SINE Alu -11 300 1 217 245 0 0 chr15 54891828 54891881 -30803873 - MIR3 SINE MIR -1 207 155 1017 268 36 0 chr15 54892074 54892298 -30803456 + MIR SINE MIR 31 262 0 1799 113 96 38 chr15 54892338 54892631 -30803123 - AluSx SINE Alu -2 310 1 1741 188 0 10 chr15 54892893 54893191 -30802563 - AluJb SINE Alu -17 295 1 1745 99 0 0 chr15 54893202 54893453 -30802301 - AluSq SINE Alu 0 313 63 2425 234 63 28 chr15 54893453 54893798 -30801956 - MER97a DNA MER1_type? -28 1025 694 2063 116 3 10 chr15 54893798 54894091 -30801663 + AluSq SINE Alu 1 291 -22 2425 234 63 28 chr15 54894091 54894741 -30801013 - MER97a DNA MER1_type? -359 694 2 2313 78 3 34 chr15 54894966 54895286 -30800468 + AluSp SINE Alu 1 310 -3 25 0 0 0 chr15 54895286 54895311 -30800443 + AT_rich Low_complexity Low_complexity 1 25 0 207 296 71 10 chr15 54896003 54896101 -30799653 - MER5A DNA MER1_type -25 164 61 42 20 0 0 chr15 54896601 54896650 -30799104 + AT_rich Low_complexity Low_complexity 1 49 0 373 285 66 7 chr15 54897857 54897994 -30797760 + MER106B DNA MER1_type 902 1046 -13 220 176 14 54 chr15 54898365 54898439 -30797315 + T-rich Low_complexity Low_complexity 5 75 0 1195 135 35 31 chr15 54898512 54898771 -30796983 + AluYb8 SINE Alu 42 301 -17 20549 144 25 37 chr15 54898778 54901839 -30793915 - L1 LINE L1 -1305 6260 3164 1904 141 7 24 chr15 54901839 54902129 -30793625 - AluSx SINE Alu -27 285 1 20549 144 25 37 chr15 54902129 54902735 -30793019 - L1 LINE L1 -4401 3164 2552 1612 155 55 26 chr15 54902735 54903006 -30792748 - AluSx SINE Alu -33 279 1 20549 144 25 37 chr15 54903006 54905632 -30790122 - L1 LINE L1 -5013 2552 13 1997 142 14 11 chr15 54905632 54905992 -30789762 - L1 LINE L1 -1764 4382 4022 474 238 70 135 chr15 54906029 54906303 -30789451 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 54906303 54906325 -30789429 + AT_rich Low_complexity Low_complexity 1 22 0 354 304 102 23 chr15 54907406 54907672 -30788082 + MLT1L LTR MaLR 235 521 -94 435 305 153 17 chr15 54908879 54909174 -30786580 + MLT1L LTR MaLR 201 535 -80 586 216 7 22 chr15 54909348 54909487 -30786267 - AluJb SINE Alu -175 137 1 203 61 30 0 chr15 54909505 54909538 -30786216 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1260 137 0 0 chr15 54910886 54911061 -30784693 - AluSg/x SINE Alu -10 302 128 1961 116 3 38 chr15 54911063 54911355 -30784399 - AluSx SINE Alu -30 282 1 10526 184 43 82 chr15 54911355 54912464 -30783290 - L1M4 LINE L1 -962 5826 4675 234 0 0 0 chr15 54912464 54912490 -30783264 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2219 104 0 3 chr15 54912497 54912784 -30782970 - AluY SINE Alu -25 286 1 10526 184 43 82 chr15 54912784 54913833 -30781921 - L1M4 LINE L1 -2119 4669 3581 2071 136 3 13 chr15 54913833 54914142 -30781612 - AluSx SINE Alu -6 306 1 10526 184 43 82 chr15 54914142 54915605 -30780149 - L1M4 LINE L1 -3207 3581 2063 2138 107 4 0 chr15 54915605 54915915 -30779839 - AluY SINE Alu 0 311 1 10526 184 43 82 chr15 54915915 54916861 -30778893 - L1M4 LINE L1 -4725 2063 1082 1992 149 0 13 chr15 54916861 54917163 -30778591 - AluSx SINE Alu -14 298 1 10526 184 43 82 chr15 54917163 54917304 -30778450 - L1M4 LINE L1 -5706 1082 937 2270 89 7 0 chr15 54917304 54917596 -30778158 - AluY SINE Alu -17 294 1 10526 184 43 82 chr15 54917596 54919568 -30776186 - L1M4 LINE L1 -5851 937 53 324 0 0 0 chr15 54919568 54919604 -30776150 + (TG)n Simple_repeat Simple_repeat 1 36 0 10526 184 43 82 chr15 54919604 54919650 -30776104 - L1M4 LINE L1 -6735 53 7 295 77 0 0 chr15 54919649 54919688 -30776066 - L1MC/D LINE L1 -916 5443 5405 * 372 342 25 13 chr15 54919822 54919980 -30775774 + L2 LINE L2 2596 2755 -559 550 305 69 42 chr15 54920196 54920530 -30775224 - L3 LINE CR1 -181 1396 1054 1919 107 0 67 chr15 54921576 54921874 -30773880 + AluSg1 SINE Alu 17 294 -15 2314 116 0 0 chr15 54921946 54922256 -30773498 + AluSx SINE Alu 1 310 -2 304 324 40 57 chr15 54922258 54922434 -30773320 - L1ME3A LINE L1 -11 6159 5987 1287 194 4 13 chr15 54922537 54922774 -30772980 - MER106A DNA MER1_type -1 235 1 381 265 68 0 chr15 54922785 54922902 -30772852 - L1ME3A LINE L1 -218 5952 5828 689 261 118 12 chr15 54922904 54923149 -30772605 - L1ME3A LINE L1 -373 5797 5527 1470 178 11 45 chr15 54923731 54924018 -30771736 - AluJo SINE Alu -4 308 32 1977 133 10 16 chr15 54925175 54925484 -30770270 - AluSq SINE Alu -6 307 1 2130 102 3 23 chr15 54926275 54926579 -30769175 - AluSc SINE Alu -11 298 1 269 323 60 38 chr15 54927107 54927240 -30768514 + MIR SINE MIR 124 259 -3 26 30 0 0 chr15 54927364 54927397 -30768357 + AT_rich Low_complexity Low_complexity 1 33 0 247 268 18 98 chr15 54927585 54927697 -30768057 - MIR SINE MIR -43 219 117 2071 141 3 0 chr15 54927775 54928072 -30767682 + AluSx SINE Alu 1 298 -14 1680 174 7 14 chr15 54928364 54928652 -30767102 + AluJo SINE Alu 1 286 -26 354 305 61 0 chr15 54929216 54929347 -30766407 + L1ME4a LINE L1 5558 5696 -425 226 201 208 97 chr15 54929523 54929667 -30766087 + L1ME4a LINE L1 5961 6120 -1 996 154 0 0 chr15 54929685 54929834 -30765920 + FRAM SINE Alu 28 176 0 644 135 0 29 chr15 54930105 54930209 -30765545 - AluSg/x SINE Alu -7 303 203 8430 55 0 0 chr15 54930536 54931505 -30764249 + LTR5 LTR ERVK 1 969 0 1464 161 30 44 chr15 54931985 54932283 -30763471 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr15 54932391 54932413 -30763341 + AT_rich Low_complexity Low_complexity 1 22 0 1318 194 129 59 chr15 54932583 54932924 -30762830 + MLT1A1 LTR MaLR 1 365 0 180 370 14 14 chr15 54933135 54933208 -30762546 - MIR SINE MIR -133 129 57 195 42 0 0 chr15 54933358 54933382 -30762372 + (TTC)n Simple_repeat Simple_repeat 3 26 0 181 171 0 29 chr15 54934612 54934647 -30761107 - MER5B DNA MER1_type -124 54 21 223 219 24 110 chr15 54934679 54934761 -30760993 - MIR SINE MIR -61 147 73 366 309 102 38 chr15 54935346 54935582 -30760172 + HAL1 LINE L1 814 1064 -1443 1886 134 20 20 chr15 54935886 54936185 -30759569 + AluJb SINE Alu 1 299 -13 319 291 99 23 chr15 54936215 54936387 -30759367 + HAL1 LINE L1 1426 1610 -897 1032 231 84 95 chr15 54936817 54937354 -30758400 + L1ME3A LINE L1 5635 6165 -5 233 210 254 24 chr15 54937407 54937655 -30758099 + L1M4 LINE L1 2958 3262 -2884 1208 181 33 14 chr15 54937857 54938072 -30757682 - MER20 DNA MER1_type 0 219 1 2161 85 14 7 chr15 54938415 54938708 -30757046 + AluSg SINE Alu 1 295 -15 1197 117 11 16 chr15 54938733 54938921 -30756833 + AluSg/x SINE Alu 124 310 0 232 322 111 54 chr15 54938941 54939239 -30756515 + HAL1 LINE L1 23 337 -2170 1961 162 7 0 chr15 54939515 54939818 -30755936 - AluJb SINE Alu -7 305 1 263 213 108 116 chr15 54939818 54940095 -30755659 + HAL1 LINE L1 796 1070 -1437 523 235 73 150 chr15 54940162 54940630 -30755124 + MLT1H LTR MaLR 110 541 -8 1009 239 113 46 chr15 54940665 54941143 -30754611 + HAL1 LINE L1 1121 1630 -877 905 248 8 43 chr15 54941153 54941387 -30754367 - MIR SINE MIR -9 253 28 553 279 139 13 chr15 54941403 54941640 -30754114 + HAL1 LINE L1 1637 1903 -604 21 0 0 0 chr15 54941669 54941690 -30754064 + AT_rich Low_complexity Low_complexity 1 21 0 244 256 172 35 chr15 54941711 54941914 -30753840 + HAL1 LINE L1 2057 2287 -220 220 324 122 22 chr15 54944098 54944237 -30751517 - L2 LINE L2 -1021 2293 2141 214 253 40 27 chr15 54944306 54944381 -30751373 + L2 LINE L2 3148 3223 -49 242 301 36 67 chr15 54944479 54944672 -30751082 - L1MC4a LINE L1 -1883 5925 5739 253 316 175 12 chr15 54944672 54944843 -30750911 - L2 LINE L2 -1300 2014 1816 817 154 0 0 chr15 54945256 54945373 -30750381 - FLAM_C SINE Alu -26 117 1 2104 119 10 0 chr15 54945396 54945690 -30750064 - AluSx SINE Alu -15 297 1 227 302 10 0 chr15 54945975 54946071 -30749683 - L1MC4a LINE L1 -1477 4669 4573 423 239 0 0 chr15 54946071 54946180 -30749574 + (CATA)n Simple_repeat Simple_repeat 2 110 0 1780 175 3 7 chr15 54946180 54946471 -30749283 - AluJb SINE Alu -21 291 2 2246 128 0 0 chr15 54946870 54947167 -30748587 - AluSx SINE Alu -15 297 1 590 190 84 53 chr15 54947186 54947412 -30748342 + L1ME4a LINE L1 5889 6121 0 1609 246 108 31 chr15 54948220 54948769 -30746985 + MLT1E LTR MaLR 3 593 0 282 116 0 0 chr15 54948840 54948883 -30746871 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2287 96 3 3 chr15 54948884 54949185 -30746569 - AluSg SINE Alu -9 301 1 3093 172 151 124 chr15 54949982 54950198 -30745556 + Charlie1a DNA MER1_type 62 271 -2490 2106 117 0 13 chr15 54950198 54950498 -30745256 + AluJb SINE Alu 1 296 -16 3093 172 151 124 chr15 54950498 54951138 -30744616 + Charlie1a DNA MER1_type 271 1073 -1688 637 159 0 9 chr15 54951138 54951245 -30744509 + FRAM SINE Alu 61 166 -10 3093 172 151 124 chr15 54951245 54951639 -30744115 + Charlie1a DNA MER1_type 1073 1455 0 518 162 213 74 chr15 54955842 54955857 -30739897 + L1MC5 LINE L1 7695 7707 -254 1917 108 70 0 chr15 54955857 54956143 -30739611 + AluSx SINE Alu 1 306 -6 518 162 213 74 chr15 54956143 54956343 -30739411 + L1MC5 LINE L1 7707 7940 -21 365 264 36 64 chr15 54956585 54956725 -30739029 - MER20 DNA MER1_type -17 202 67 189 316 158 67 chr15 54957053 54957369 -30738385 + L2 LINE L2 2910 3254 -18 207 0 0 0 chr15 54958163 54958186 -30737568 + (CCCCG)n Simple_repeat Simple_repeat 3 25 0 26 0 0 0 chr15 54958498 54958524 -30737230 + GC_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr15 54958764 54958824 -30736930 + GC_rich Low_complexity Low_complexity 1 60 0 312 262 123 109 chr15 54958953 54959319 -30736435 + L1M2 LINE L1 771 1141 -5708 227 303 13 0 chr15 54959406 54959482 -30736272 + L2 LINE L2 2562 2638 -676 264 267 27 27 chr15 54959907 54959982 -30735772 + L2 LINE L2 3191 3265 -7 265 180 20 0 chr15 54959998 54960048 -30735706 + L2 LINE L2 3204 3254 -18 769 208 21 0 chr15 54960128 54960272 -30735482 + MER45A DNA AcHobo 1 147 -31 186 297 158 59 chr15 54961100 54961201 -30734553 - L2 LINE L2 -4 3268 3158 702 230 60 15 chr15 54961234 54961615 -30734139 - MLT1L LTR MaLR -12 603 164 2245 116 0 0 chr15 54961943 54962237 -30733517 - AluSc SINE Alu -15 294 1 1169 53 0 0 chr15 54962240 54962373 -30733381 - AluSq/x SINE Alu -179 133 1 2035 182 42 5 chr15 54962537 54962939 -30732815 - L1MC/D LINE L1 -446 5796 5380 261 146 0 18 chr15 54962939 54962994 -30732760 + MER113 DNA MER1_type? 94 147 -374 1330 201 7 29 chr15 54962996 54963269 -30732485 + AluJb SINE Alu 37 303 -9 950 117 6 43 chr15 54963278 54963440 -30732314 + MER5A DNA MER1_type 2 157 -32 245 276 52 43 chr15 54963523 54963639 -30732115 - MER91C DNA MER1_type -23 117 1 200 219 78 16 chr15 54963681 54963745 -30732009 - MIR SINE MIR -60 148 81 22 0 0 0 chr15 54964030 54964052 -30731702 + AT_rich Low_complexity Low_complexity 1 22 0 324 297 61 127 chr15 54964434 54964811 -30730943 - L1M2 LINE L1 -5824 1025 674 193 186 121 44 chr15 54966354 54966422 -30729332 + MIR SINE MIR 74 145 -78 828 200 7 7 chr15 54966871 54967021 -30728733 - FRAM SINE Alu -15 151 2 734 144 32 0 chr15 54968186 54968311 -30727443 + FLAM_C SINE Alu 1 129 -14 851 195 57 0 chr15 54968330 54968489 -30727265 - AluJo SINE Alu -59 253 86 360 275 121 27 chr15 54968766 54968915 -30726839 + MIR3 SINE MIR 33 195 -13 5461 82 26 0 chr15 54969288 54970069 -30725685 + L1PA13 LINE L1 5355 6155 -8 638 217 39 41 chr15 54970299 54970606 -30725148 - MLT1C LTR MaLR 0 467 109 24 0 0 0 chr15 54970633 54970657 -30725097 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 54971044 54971072 -30724682 + AT_rich Low_complexity Low_complexity 1 28 0 270 277 36 27 chr15 54971723 54971835 -30723919 + MER103 DNA DNA 54 166 0 245 255 85 85 chr15 54972827 54972933 -30722821 + MIR SINE MIR 23 128 -80 1870 172 10 0 chr15 54973257 54973547 -30722207 + AluJo SINE Alu 3 295 -17 1073 233 126 32 chr15 54975319 54975723 -30720031 + MLT1J LTR MaLR 5 446 -65 2467 58 0 0 chr15 54977107 54977401 -30718353 - AluY SINE Alu -17 294 1 2199 100 14 0 chr15 54977895 54978186 -30717568 - AluSp SINE Alu -18 295 1 242 303 23 45 chr15 54978470 54978541 -30717213 + L1MB3 LINE L1 8 76 -6466 2436 74 0 3 chr15 54978541 54978837 -30716917 + AluY SINE Alu 1 295 -16 242 303 23 45 chr15 54978837 54978897 -30716857 + L1MB3 LINE L1 76 136 -6406 1124 251 121 21 chr15 54979247 54980011 -30715743 + L1MB3 LINE L1 611 1827 -4738 6897 217 91 12 chr15 54980088 54983222 -30712532 + L1MB3 LINE L1 3286 6671 -10 198 0 0 0 chr15 54983240 54983262 -30712492 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr15 54983275 54983297 -30712457 + AT_rich Low_complexity Low_complexity 1 22 0 1462 133 142 131 chr15 54983323 54983604 -30712150 + L1MC2 LINE L1 5842 6193 -151 259 254 16 0 chr15 54983604 54983667 -30712087 + AluYb8 SINE Alu 242 305 -3 1462 133 142 131 chr15 54983667 54983810 -30711944 + L1MC2 LINE L1 6193 6333 -11 468 258 55 0 chr15 54985503 54985631 -30710123 + MIR SINE MIR 104 238 -24 21 57 0 0 chr15 54986236 54986271 -30709483 + AT_rich Low_complexity Low_complexity 1 35 0 1494 100 61 17 chr15 54986553 54986783 -30708971 - AluSg/x SINE Alu -1 309 70 4500 149 33 34 chr15 54987028 54987097 -30708657 - L1MB3 LINE L1 -3 6180 6112 2842 151 81 0 chr15 54987097 54987606 -30708148 - MER44D DNA MER2_type 0 605 1 4500 149 33 34 chr15 54987606 54987647 -30708107 - L1MB3 LINE L1 -71 6112 6072 2531 57 0 13 chr15 54987647 54987962 -30707792 - AluY SINE Alu 0 311 1 4500 149 33 34 chr15 54987962 54988309 -30707445 - L1MB3 LINE L1 -111 6072 5726 3961 99 29 2 chr15 54988309 54988895 -30706859 + LTR43 LTR ERV1 1 602 0 4500 149 33 34 chr15 54988895 54989609 -30706145 - L1MB3 LINE L1 -457 5726 5013 378 0 0 0 chr15 54989609 54989651 -30706103 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4500 149 33 34 chr15 54989651 54989663 -30706091 - L1MB3 LINE L1 -1170 5013 5002 1769 87 0 16 chr15 54989663 54989905 -30705849 - AluSg SINE Alu -72 238 1 4500 149 33 34 chr15 54989905 54989997 -30705757 - L1MB3 LINE L1 -1181 5002 4901 21 0 0 0 chr15 54990038 54990059 -30705695 + AT_rich Low_complexity Low_complexity 1 21 0 1824 148 3 21 chr15 54990168 54990459 -30705295 + AluJo SINE Alu 7 292 -20 326 184 23 23 chr15 54990459 54990546 -30705208 - L1MB8 LINE L1 -57 6121 6035 1361 161 81 8 chr15 54990558 54990806 -30704948 + AluSx SINE Alu 35 300 -12 2726 195 164 16 chr15 54990808 54991691 -30704063 - L1M4 LINE L1 -817 5329 4316 316 157 52 0 chr15 54992178 54992270 -30703484 - L1MB8 LINE L1 -817 5329 5250 2360 89 0 3 chr15 54992552 54992854 -30702900 - AluSx SINE Alu 0 312 12 421 196 101 14 chr15 54992870 54993008 -30702746 - L1MEc LINE L1 -3985 2411 2262 1472 259 23 9 chr15 54993010 54993447 -30702307 - L1MEc LINE L1 -4327 2069 1627 2414 152 24 26 chr15 54993464 54993964 -30701790 - L1MB8 LINE L1 -1 6177 5679 789 165 16 0 chr15 54993988 54994115 -30701639 - FLAM_A SINE Alu -3 130 2 2694 191 36 32 chr15 54994115 54994895 -30700859 - L1MB8 LINE L1 -742 5442 4671 * 3194 236 119 39 chr15 54994888 54995120 -30700634 - L1MEc LINE L1 -4752 1644 1432 1667 160 23 0 chr15 54995120 54995382 -30700372 - AluJb SINE Alu -44 268 1 3194 236 119 39 chr15 54995382 54995823 -30699931 - L1MEc LINE L1 -4964 1432 1028 2100 112 20 3 chr15 54995823 54996119 -30699635 - AluSx SINE Alu -11 301 1 3194 236 119 39 chr15 54996119 54996926 -30698828 - L1MEc LINE L1 -5368 1028 44 328 303 107 6 chr15 54998266 54998444 -30697310 - L1MEd LINE L1 -4176 2134 1939 904 299 68 34 chr15 54998679 54999395 -30696359 - L1MEd LINE L1 -4701 1609 822 2580 62 0 0 chr15 54999395 54999704 -30696050 - AluY SINE Alu -2 309 1 904 299 68 34 chr15 54999704 54999980 -30695774 - L1MEd LINE L1 -5488 822 557 1554 169 57 36 chr15 55000366 55000667 -30695087 - AluJo SINE Alu -5 307 1 33 66 0 0 chr15 55000844 55000905 -30694849 + AT_rich Low_complexity Low_complexity 1 61 0 1342 185 70 26 chr15 55000906 55001176 -30694578 - AluJo SINE Alu -30 282 1 787 309 21 25 chr15 55001177 55001504 -30694250 + MLT1I LTR MaLR 81 406 -3 534 240 165 38 chr15 55001743 55002209 -30693545 - MLT1G1 LTR MaLR 0 595 1 343 325 40 32 chr15 55002715 55002841 -30692913 + L2 LINE L2 3119 3245 -27 416 336 51 12 chr15 55003696 55003949 -30691805 - L1M4 LINE L1 -1162 4984 4722 1809 163 14 14 chr15 55004755 55004891 -30690863 + AluJo SINE Alu 1 136 -176 2485 73 0 3 chr15 55004891 55005191 -30690563 + AluSc SINE Alu 1 299 -10 1809 163 14 14 chr15 55005191 55005342 -30690412 + AluJo SINE Alu 135 288 -24 22 56 0 0 chr15 55005342 55005378 -30690376 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 55005390 55005416 -30690338 + AT_rich Low_complexity Low_complexity 1 26 0 195 100 0 0 chr15 55005536 55005566 -30690188 + (CA)n Simple_repeat Simple_repeat 2 31 0 1880 134 20 7 chr15 55006037 55006335 -30689419 + AluJb SINE Alu 1 302 -10 2300 82 3 3 chr15 55006337 55006640 -30689114 + AluY SINE Alu 1 303 -8 286 293 130 28 chr15 55007676 55007858 -30687896 + MIR SINE MIR 19 221 -41 2352 87 3 0 chr15 55008228 55008528 -30687226 + AluSg1 SINE Alu 1 301 -8 2323 115 0 0 chr15 55008848 55009153 -30686601 - AluSq SINE Alu -8 305 1 2321 100 3 0 chr15 55009697 55009998 -30685756 + AluSx SINE Alu 1 302 -10 626 207 0 44 chr15 55010005 55010140 -30685614 + FLAM_A SINE Alu 1 129 -4 25 51 0 0 chr15 55010311 55010350 -30685404 + AT_rich Low_complexity Low_complexity 1 39 0 888 172 137 42 chr15 55012363 55012625 -30683129 + LTR37A LTR ERV1 50 336 -90 437 240 44 78 chr15 55012820 55013091 -30682663 + MER31-int LTR ERV1 1025 1286 -3650 22221 97 15 17 chr15 55013193 55018752 -30677002 - L1P3 LINE L1 -434 6035 415 3308 101 30 2 chr15 55019227 55019731 -30676023 - L1P3 LINE L1 -5937 524 7 * 4095 127 90 20 chr15 55019725 55019771 -30675983 - L1MA4 LINE L1 -123 6177 6136 2353 108 0 0 chr15 55019771 55020076 -30675678 - AluSx SINE Alu -7 305 1 4095 127 90 20 chr15 55020076 55020831 -30674923 - L1MA4 LINE L1 -164 6136 5320 538 59 0 0 chr15 55020831 55020899 -30674855 - U4 snRNA snRNA -77 68 1 1586 172 3 21 chr15 55020909 55021246 -30674508 - L1MA4 LINE L1 -824 5322 4992 386 165 36 0 chr15 55022377 55022460 -30673294 + Tigger4(Zombi) DNA MER2_type 1 2731 0 381 231 62 39 chr15 55022845 55022975 -30672779 + L1M4 LINE L1 3095 3227 -2919 752 268 61 4 chr15 55022996 55023224 -30672530 + MLT1H1 LTR MaLR 3 243 -312 625 236 39 30 chr15 55023239 55023442 -30672312 + MLT1H1 LTR MaLR 345 549 -6 262 248 206 28 chr15 55023584 55023725 -30672029 + MLT1H1 LTR MaLR 384 549 -6 537 269 77 51 chr15 55023801 55024425 -30671329 + L1M4 LINE L1 3342 3981 -2165 1854 251 66 36 chr15 55024479 55025253 -30670501 + L1MC4a LINE L1 50 846 -5224 639 281 65 33 chr15 55025270 55025779 -30669975 + L1MC4a LINE L1 3881 4405 -1675 21 71 0 0 chr15 55025802 55025844 -30669910 + AT_rich Low_complexity Low_complexity 1 42 0 1740 138 26 10 chr15 55026004 55026315 -30669439 + L1MC1 LINE L1 5995 6310 -23 3338 62 2 0 chr15 55026332 55026753 -30669001 + L1PA7 LINE L1 5728 6149 -5 1966 153 0 0 chr15 55026792 55027103 -30668651 - AluSx SINE Alu 0 311 1 2484 200 15 29 chr15 55027161 55027687 -30668067 - MER68 LTR ERV1 -43 519 1 21 71 0 0 chr15 55027742 55027784 -30667970 + AT_rich Low_complexity Low_complexity 1 42 0 225 238 0 0 chr15 55027801 55027864 -30667890 + L1MC4a LINE L1 5122 5184 -896 390 178 59 10 chr15 55027986 55028087 -30667667 + L1MC4a LINE L1 5324 5429 -2313 1113 227 167 5 chr15 55028114 55028515 -30667239 + L1MC4a LINE L1 5371 5836 -1906 26 30 0 0 chr15 55028638 55028671 -30667083 + AT_rich Low_complexity Low_complexity 1 33 0 1169 209 79 25 chr15 55029391 55029707 -30666047 + MLT1A2 LTR MaLR 39 371 -3 2279 101 0 3 chr15 55030149 55030445 -30665309 - AluSx SINE Alu -17 295 1 2038 141 7 7 chr15 55030812 55031116 -30664638 - AluJo SINE Alu -8 304 1 486 210 49 7 chr15 55031202 55031345 -30664409 - L1MEc LINE L1 -4603 1793 1645 429 202 32 8 chr15 55031483 55031607 -30664147 - L1MEc LINE L1 -5242 1154 1028 1727 297 50 23 chr15 55031608 55032551 -30663203 - L1MEc LINE L1 -5402 994 27 1712 161 33 16 chr15 55032630 55032934 -30662820 - AluJo SINE Alu -3 309 1 983 215 78 60 chr15 55033005 55033090 -30662664 - L1ME LINE L1 -3283 2797 2715 1333 177 104 25 chr15 55033090 55033406 -30662348 - MER58B DNA MER1_type 0 341 1 983 215 78 60 chr15 55033406 55033753 -30662001 - L1ME LINE L1 -3365 2715 2357 1071 279 56 25 chr15 55033796 55034428 -30661326 - L1ME LINE L1 -3961 2119 1448 * 1781 148 61 81 chr15 55034420 55034920 -30660834 - L1MA10 LINE L1 -2 6332 5701 1582 261 95 42 chr15 55034909 55035400 -30660354 - L1ME LINE L1 -4744 1517 1054 * 1758 98 87 23 chr15 55035400 55035666 -30660088 + AluSg SINE Alu 12 294 -16 1582 261 95 42 chr15 55035666 55036519 -30659235 - L1ME LINE L1 -5207 1054 68 2372 152 28 30 chr15 55036780 55036846 -30658908 - MSTB LTR MaLR 0 426 361 1697 158 3 74 chr15 55036846 55037182 -30658572 + AluJo SINE Alu 1 312 0 2372 152 28 30 chr15 55037182 55037542 -30658212 - MSTB LTR MaLR -65 361 1 238 121 0 20 chr15 55038102 55038151 -30657603 + Alu SINE Alu 85 127 -175 198 328 97 15 chr15 55039366 55039500 -30656254 - L2 LINE L2 -4 3309 3165 402 235 0 10 chr15 55039774 55039876 -30655878 - MLT1J2 LTR MaLR -272 178 78 1079 287 100 7 chr15 55040093 55040626 -30655128 - L2 LINE L2 0 3313 2719 466 334 164 5 chr15 55040653 55041093 -30654661 + L1MC4a LINE L1 4383 4892 -1254 475 216 144 9 chr15 55041096 55041207 -30654547 - L2 LINE L2 0 3313 3188 307 160 186 115 chr15 55041569 55041725 -30654029 + MLT1A1 LTR MaLR 30 196 -169 734 207 39 39 chr15 55041739 55041942 -30653812 + MLT1A1 LTR MaLR 161 363 -2 1013 187 60 0 chr15 55042013 55042179 -30653575 + AluJo SINE Alu 6 181 -131 2028 104 0 0 chr15 55042179 55042438 -30653316 - AluSq SINE Alu -54 259 1 958 271 91 54 chr15 55042634 55043192 -30652562 + L1MC4a LINE L1 5329 5907 -1901 1757 162 6 38 chr15 55043243 55043557 -30652197 - AluJo SINE Alu -8 304 1 1044 149 77 32 chr15 55043559 55043837 -30651917 - MER33 DNA MER1_type -47 277 1 215 289 0 0 chr15 55043846 55043898 -30651856 - L2 LINE L2 -5 3308 3257 349 298 39 0 chr15 55044310 55044414 -30651340 + L1MEc LINE L1 2171 2278 -4118 2125 260 62 25 chr15 55044431 55045615 -30650139 + L1MEc LINE L1 1929 3100 -3115 4937 150 156 21 chr15 55045619 55046578 -30649176 + L1M4 LINE L1 1144 2297 -4087 2312 94 7 0 chr15 55046578 55046877 -30648877 + AluSp SINE Alu 1 301 -12 4937 150 156 21 chr15 55046877 55047113 -30648641 + L1M4 LINE L1 2297 2500 -3884 2123 104 13 70 chr15 55047115 55047351 -30648403 - Tigger2 DNA MER2_type 0 2718 2470 1777 139 23 55 chr15 55047351 55047661 -30648093 + AluJo SINE Alu 1 300 -12 2079 129 33 7 chr15 55047662 55047964 -30647790 + AluSx SINE Alu 1 310 -2 2123 104 13 70 chr15 55047964 55048099 -30647655 - Tigger2 DNA MER2_type -247 2471 2366 26 30 0 0 chr15 55048661 55048694 -30647060 + AT_rich Low_complexity Low_complexity 1 33 0 324 234 139 22 chr15 55049271 55049408 -30646346 + L1M4 LINE L1 3121 3273 -3109 852 179 62 5 chr15 55049426 55049621 -30646133 + L1M4 LINE L1 4934 5139 -1243 2523 73 0 0 chr15 55049687 55049988 -30645766 - AluY SINE Alu -10 301 1 189 233 133 0 chr15 55050128 55050188 -30645566 + MIR SINE MIR 73 140 -122 448 228 8 39 chr15 55050285 55050412 -30645342 + L1ME1 LINE L1 6039 6161 -5 384 324 28 28 chr15 55050480 55050662 -30645092 - L3b LINE CR1 -250 1333 1152 244 320 16 24 chr15 55052224 55052349 -30643405 + CT-rich Low_complexity Low_complexity 4 127 0 25 31 0 0 chr15 55052626 55052658 -30643096 + AT_rich Low_complexity Low_complexity 1 32 0 653 82 0 73 chr15 55054014 55054124 -30641630 + L1PA10 LINE L1 6065 6166 -2 22 35 0 0 chr15 55054995 55055024 -30640730 + AT_rich Low_complexity Low_complexity 1 29 0 920 56 0 0 chr15 55055492 55055599 -30640155 + AluY SINE Alu 188 294 -17 29439 106 14 59 chr15 55055613 55062052 -30633702 - L1PA7 LINE L1 -5 6149 12 7068 107 91 7 chr15 55062121 55062758 -30632996 + Tigger1 DNA MER2_type 1 583 -1835 1521 83 65 0 chr15 55062758 55062974 -30632780 + MER30 DNA MER1_type 1 230 0 7068 107 91 7 chr15 55062974 55063518 -30632236 + Tigger1 DNA MER2_type 583 1281 -1137 1702 124 19 4 chr15 55063514 55063781 -30631973 + Tigger1 DNA MER2_type 2147 2417 -1 * 2102 148 18 0 chr15 55064096 55064427 -30631327 - MER1B DNA MER1_type 0 337 1 243 0 0 0 chr15 55064678 55064705 -30631049 + (CA)n Simple_repeat Simple_repeat 2 28 0 506 342 102 38 chr15 55064708 55065161 -30630593 - L2 LINE L2 -200 3072 2596 209 278 41 77 chr15 55065589 55065758 -30629996 + L2 LINE L2 2174 2336 -978 275 330 47 0 chr15 55066866 55066972 -30628782 - MLT1L LTR MaLR -87 528 418 215 247 12 24 chr15 55067496 55067581 -30628173 + GA-rich Low_complexity Low_complexity 4 87 0 2173 117 3 0 chr15 55068364 55068677 -30627077 - AluSx SINE Alu 0 314 1 417 274 38 25 chr15 55069033 55069190 -30626564 + MER103 DNA DNA 3 161 -5 442 266 84 53 chr15 55071164 55071427 -30624327 - L2 LINE L2 -60 3253 2983 481 235 130 31 chr15 55072015 55072177 -30623577 + MER5B DNA MER1_type 1 178 0 337 270 34 0 chr15 55072196 55072285 -30623469 + MER5A DNA MER1_type 14 105 -84 267 208 0 0 chr15 55072728 55072781 -30622973 + MER58 DNA MER1_type 2368 2420 0 2189 96 0 84 chr15 55072980 55073312 -30622442 - AluSg SINE Alu -6 304 1 782 251 78 15 chr15 55073357 55073628 -30622126 + L2 LINE L2 1185 1472 -1842 620 49 12 0 chr15 55073630 55073711 -30622043 - AluY SINE Alu -227 83 2 870 242 204 36 chr15 55073735 55073780 -30621974 + L2 LINE L2 2164 2200 -1114 1100 145 5 59 chr15 55073780 55074001 -30621753 + MER3 DNA MER1_type 1 209 0 870 242 204 36 chr15 55074001 55074029 -30621725 + L2 LINE L2 2200 2222 -1092 2344 88 3 0 chr15 55074029 55074323 -30621431 - AluY SINE Alu -15 296 2 2274 107 3 0 chr15 55074324 55074614 -30621140 - AluSx SINE Alu -16 296 6 870 242 204 36 chr15 55074614 55074785 -30620969 + L2 LINE L2 2222 2363 -951 1506 167 21 0 chr15 55074785 55075025 -30620729 - AluJo SINE Alu -67 245 1 870 242 204 36 chr15 55075025 55075164 -30620590 + L2 LINE L2 2363 2616 -698 1255 239 169 29 chr15 55075264 55075518 -30620236 + L2 LINE L2 2584 2801 -512 2334 112 0 3 chr15 55075518 55075821 -30619933 - AluSx SINE Alu -10 302 1 1255 239 169 29 chr15 55075821 55076194 -30619560 + L2 LINE L2 2801 3311 -2 352 350 31 43 chr15 55076729 55076892 -30618862 - MIR3 SINE MIR -3 205 45 252 220 17 51 chr15 55077183 55077242 -30618512 + MIR SINE MIR 58 114 -94 4184 84 8 39 chr15 55077551 55078168 -30617586 - MER51A LTR ERV1 -36 598 1 227 165 231 22 chr15 55078168 55078259 -30617495 + L1ME2 LINE L1 6052 6161 -3 470 309 194 35 chr15 55078269 55078930 -30616824 - L2 LINE L2 -613 2701 1936 251 303 85 81 chr15 55079228 55079439 -30616315 - L2 LINE L2 -16 3256 3045 834 142 8 22 chr15 55079462 55079596 -30616158 + FLAM_C SINE Alu 2 133 0 2420 84 0 3 chr15 55079604 55079901 -30615853 + AluY SINE Alu 1 296 -15 2322 121 0 3 chr15 55079901 55080214 -30615540 + AluSx SINE Alu 1 312 0 309 259 50 93 chr15 55080898 55081037 -30614717 - HAL1 LINE L1 -8 2499 2367 1642 129 187 71 chr15 55081106 55081486 -30614268 + MSTA LTR MaLR 1 424 -4 566 293 2 0 chr15 55081532 55081689 -30614065 + MIR SINE MIR 3 160 -63 10029 117 28 5 chr15 55081695 55083245 -30612509 + L1P3 LINE L1 5 1590 -4871 319 277 90 60 chr15 55083658 55083824 -30611930 - MIR SINE MIR -72 190 20 1823 143 14 4 chr15 55084095 55084415 -30611339 + AluJb SINE Alu 1 323 0 254 319 28 0 chr15 55086527 55086599 -30609155 - MIR SINE MIR -6 256 183 283 277 189 44 chr15 55086684 55086843 -30608911 + MIR SINE MIR 43 224 -38 236 358 83 9 chr15 55086911 55087020 -30608734 - L2 LINE L2 0 3313 3197 2168 109 10 10 chr15 55087890 55088201 -30607553 + AluSp SINE Alu 1 311 -2 692 258 134 18 chr15 55088202 55088419 -30607335 - MIR SINE MIR 0 262 21 378 287 62 45 chr15 55088599 55088778 -30606976 + MIR3 SINE MIR 3 184 -67 680 282 82 51 chr15 55089533 55089991 -30605763 - MLT1H LTR MaLR -13 536 1 2344 90 10 3 chr15 55090679 55090978 -30604776 - AluSq SINE Alu -12 301 1 224 247 22 101 chr15 55091513 55091602 -30604152 - MIR3 SINE MIR -18 190 109 451 241 92 52 chr15 55091931 55092105 -30603649 - MER20B DNA MER1_type -595 188 8 2495 82 3 3 chr15 55093084 55093388 -30602366 + AluSq SINE Alu 1 304 -9 309 286 50 43 chr15 55093561 55093701 -30602053 - MIR3 SINE MIR -7 201 61 815 182 136 7 chr15 55094607 55094761 -30600993 + MER45A DNA AcHobo 1 174 -4 337 241 96 66 chr15 55095769 55095889 -30599865 - MIR3 SINE MIR -8 200 72 1988 160 3 0 chr15 55095889 55096183 -30599571 + AluJb SINE Alu 1 295 -17 337 241 96 66 chr15 55096183 55096228 -30599526 - MIR3 SINE MIR -136 72 30 2106 142 0 10 chr15 55096370 55096672 -30599082 - AluSx SINE Alu -13 299 1 3729 171 5 57 chr15 55096696 55097241 -30598513 - L1MB3 LINE L1 -1 6182 5687 2312 102 0 10 chr15 55097241 55097545 -30598209 + AluSx SINE Alu 1 301 -11 3729 171 5 57 chr15 55097545 55097778 -30597976 - L1MB3 LINE L1 -496 5687 5444 285 335 137 24 chr15 55097951 55098199 -30597555 + L2 LINE L2 1146 1421 -1893 429 286 100 59 chr15 55098352 55098651 -30597103 + L2 LINE L2 1710 2028 -1286 898 115 0 43 chr15 55098651 55098790 -30596964 - FLAM_C SINE Alu 0 133 1 429 286 100 59 chr15 55098790 55098861 -30596893 + L2 LINE L2 2028 2095 -1219 318 224 35 12 chr15 55099085 55099170 -30596584 - MLT1L LTR MaLR -324 291 205 334 134 31 16 chr15 55101396 55101620 -30594134 + AluJo SINE Alu 17 300 -2 1399 84 0 42 chr15 55102229 55102420 -30593334 - AluSg SINE Alu -122 188 6 1269 98 186 0 chr15 55102442 55102636 -30593118 - MER30 DNA MER1_type 0 230 1 1907 151 16 0 chr15 55102806 55103185 -30592569 + L1MC2 LINE L1 5194 5577 -745 2338 94 17 0 chr15 55103196 55103493 -30592261 - AluSq SINE Alu -11 302 1 226 191 48 16 chr15 55103523 55103586 -30592168 - L1MA5 LINE L1 -271 6029 5965 1629 68 0 29 chr15 55103618 55103825 -30591929 - AluSq SINE Alu -112 201 1 4110 150 21 24 chr15 55103826 55104592 -30591162 + L1MC2 LINE L1 5575 6338 -6 2458 82 7 0 chr15 55105151 55105457 -30590297 + AluSc SINE Alu 1 308 -1 213 327 119 45 chr15 55105460 55105745 -30590009 - L2 LINE L2 -348 2966 2655 2310 93 3 0 chr15 55105745 55106045 -30589709 + AluY SINE Alu 3 303 -8 213 327 119 45 chr15 55106045 55106071 -30589683 - L2 LINE L2 -659 2655 2632 238 221 125 39 chr15 55106247 55106351 -30589403 - L1ME4a LINE L1 -47 6074 5962 2010 145 7 0 chr15 55106352 55106649 -30589105 + AluJb SINE Alu 1 299 -13 494 245 20 34 chr15 55107033 55107180 -30588574 - MER58A DNA MER1_type 0 145 1 271 271 83 10 chr15 55107188 55107284 -30588470 + L2 LINE L2 3168 3270 -2 957 100 38 130 chr15 55107841 55107910 -30587844 - L1MA8 LINE L1 -2 6289 6215 2022 129 0 43 chr15 55107910 55108236 -30587518 - AluJo SINE Alu 0 312 1 957 100 38 130 chr15 55108236 55108405 -30587349 - L1MA8 LINE L1 -76 6215 6073 1387 193 17 3 chr15 55108548 55108843 -30586911 - MER33 DNA MER1_type -5 319 21 433 239 168 30 chr15 55108920 55109087 -30586667 - MIR SINE MIR -50 212 23 232 237 53 13 chr15 55109152 55109228 -30586526 + L2 LINE L2 3235 3313 0 342 324 66 7 chr15 55109233 55109369 -30586385 - MIR3 SINE MIR -63 145 2 228 259 19 0 chr15 55109859 55109911 -30585843 - MIR3 SINE MIR -3 205 153 691 211 139 18 chr15 55109911 55110077 -30585677 - MER5A DNA MER1_type 0 189 4 845 177 7 0 chr15 55111003 55111150 -30584604 + FRAM SINE Alu 1 146 -30 1052 182 189 19 chr15 55111185 55111449 -30584305 - AluSg1 SINE Alu 0 309 1 240 35 0 0 chr15 55111478 55111507 -30584247 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1498 147 22 145 chr15 55111917 55112025 -30583729 + L1MA9 LINE L1 5825 5945 -367 2237 68 14 4 chr15 55112025 55112305 -30583449 - AluSx SINE Alu -24 288 6 1498 147 22 145 chr15 55112305 55112738 -30583016 + L1MA9 LINE L1 5945 6297 -15 1902 171 3 0 chr15 55112804 55113108 -30582646 - AluJo SINE Alu -7 305 1 240 239 60 15 chr15 55113113 55113180 -30582574 + MLT1L LTR MaLR 546 615 0 183 261 22 0 chr15 55113298 55113344 -30582410 - MER5A DNA MER1_type -77 112 66 * 830 210 40 17 chr15 55113319 55113495 -30582259 + MER5A DNA MER1_type 10 189 0 381 292 71 19 chr15 55113515 55113669 -30582085 - MER5B DNA MER1_type -16 162 1 2138 229 61 74 chr15 55114421 55114844 -30580910 + L1MC5 LINE L1 6966 7393 -568 2325 106 3 3 chr15 55114844 55115155 -30580599 + AluSp SINE Alu 1 311 -2 2138 229 61 74 chr15 55115155 55115426 -30580328 + L1MC5 LINE L1 7393 7666 -295 1880 159 23 7 chr15 55115426 55115728 -30580026 + AluJo SINE Alu 1 307 -5 1959 136 11 11 chr15 55115729 55116016 -30579738 + AluSx SINE Alu 2 288 -24 2138 229 61 74 chr15 55116016 55116291 -30579463 + L1MC5 LINE L1 7665 7925 -36 21 36 0 0 chr15 55116365 55116393 -30579361 + AT_rich Low_complexity Low_complexity 1 28 0 2060 99 41 24 chr15 55116567 55116860 -30578894 + AluSq SINE Alu 1 298 -15 228 292 15 0 chr15 55117465 55117530 -30578224 + L2 LINE L2 3203 3268 -4 527 197 8 39 chr15 55117538 55117665 -30578089 - MLT1H LTR MaLR -52 497 375 235 295 0 0 chr15 55117694 55117755 -30577999 - MLT1H LTR MaLR -264 285 225 743 279 93 63 chr15 55119134 55119238 -30576516 + MLT1L LTR MaLR 9 108 -507 2198 103 7 20 chr15 55119238 55119538 -30576216 - AluSx SINE Alu -16 296 1 743 279 93 63 chr15 55119538 55119874 -30575880 + MLT1L LTR MaLR 108 462 -153 3479 173 84 40 chr15 55119874 55120046 -30575708 + L1MA9 LINE L1 4447 4610 -1536 1441 221 3 3 chr15 55120046 55120336 -30575418 + AluJo SINE Alu 5 294 -18 3479 173 84 40 chr15 55120336 55120974 -30574780 + L1MA9 LINE L1 4610 5293 -853 2822 136 10 128 chr15 55121002 55121090 -30574664 + L1MA9 LINE L1 5254 5351 -961 2318 100 0 0 chr15 55121090 55121389 -30574365 + AluSx SINE Alu 1 299 -13 2822 136 10 128 chr15 55121389 55121967 -30573787 + L1MA9 LINE L1 5351 5839 -473 739 110 0 0 chr15 55122070 55122170 -30573584 - AluSq/x SINE Alu -202 111 12 794 185 181 19 chr15 55122266 55122503 -30573251 + MLT1D LTR MaLR 207 505 0 1602 211 112 24 chr15 55123357 55123821 -30571933 - MLT1D LTR MaLR 0 505 1 1965 143 7 7 chr15 55123990 55124313 -30571441 + AluJb SINE Alu 1 312 0 1993 144 10 13 chr15 55125097 55125410 -30570344 + AluJb SINE Alu 1 312 0 195 333 61 20 chr15 55125557 55125656 -30570098 + L2 LINE L2 3169 3271 -1 2732 253 53 12 chr15 55125791 55126702 -30569052 + L2 LINE L2 1954 2901 -413 29 47 0 0 chr15 55126716 55126759 -30568995 + AT_rich Low_complexity Low_complexity 1 43 0 729 219 34 6 chr15 55126812 55126990 -30568764 + L1MB3 LINE L1 5999 6181 -2 550 276 127 0 chr15 55127886 55128067 -30567687 - MIR SINE MIR -14 248 45 225 250 56 14 chr15 55129894 55129966 -30565788 - MIR SINE MIR -166 96 22 579 233 219 16 chr15 55130000 55130365 -30565389 + L2 LINE L2 2828 3266 -47 256 272 29 29 chr15 55130803 55130906 -30564848 + L1ME4a LINE L1 5946 6048 -73 2305 90 0 3 chr15 55131509 55131798 -30563956 + AluSx SINE Alu 1 288 -24 2224 100 13 13 chr15 55131872 55132181 -30563573 + AluSg SINE Alu 1 309 -1 1642 169 0 4 chr15 55132426 55132693 -30563061 - AluJo SINE Alu 0 312 47 369 329 135 41 chr15 55132926 55133340 -30562414 - L2 LINE L2 -5 3308 2856 642 71 0 0 chr15 55133455 55133540 -30562214 + AluY SINE Alu 217 301 -10 1451 158 42 49 chr15 55133597 55133774 -30561980 + MSTB LTR MaLR 1 178 -248 243 0 0 0 chr15 55133774 55133801 -30561953 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2282 89 0 0 chr15 55133804 55134085 -30561669 - AluSx SINE Alu -31 281 1 1451 158 42 49 chr15 55134085 55134188 -30561566 + MSTB LTR MaLR 180 283 -143 710 239 84 50 chr15 55134296 55134535 -30561219 + MSTB LTR MaLR 180 426 0 343 262 43 19 chr15 55135006 55135187 -30560567 - MIR SINE MIR -28 234 46 1748 170 7 17 chr15 55135723 55136023 -30559731 + AluJo SINE Alu 2 298 -14 1967 107 21 7 chr15 55136235 55136526 -30559228 + AluSg SINE Alu 15 309 -1 1814 59 5 5 chr15 55136726 55136948 -30558806 - AluY SINE Alu -89 222 1 310 334 122 53 chr15 55136959 55137665 -30558089 - L2 LINE L2 -431 2883 2227 2210 139 0 0 chr15 55137665 55137975 -30557779 + AluSx SINE Alu 1 310 -2 310 334 122 53 chr15 55137975 55138146 -30557608 - L2 LINE L2 -1087 2227 2069 2123 139 13 11 chr15 55138146 55138521 -30557233 + L1MA5 LINE L1 5925 6300 0 310 334 122 53 chr15 55138521 55138640 -30557114 - L2 LINE L2 -1245 2069 1817 388 266 271 16 chr15 55138661 55138849 -30556905 + HAL1 LINE L1 1638 1873 -634 981 176 0 0 chr15 55138860 55139025 -30556729 + FRAM SINE Alu 1 165 -1 1895 145 3 7 chr15 55139163 55139476 -30556278 + AluJb SINE Alu 1 312 0 2221 111 0 0 chr15 55139863 55140161 -30555593 + AluSx SINE Alu 1 298 -14 234 305 95 0 chr15 55140165 55140260 -30555494 - MIR SINE MIR -4 258 155 2522 83 0 0 chr15 55140260 55140560 -30555194 - AluSg SINE Alu -10 300 1 29471 86 14 5 chr15 55140566 55145490 -30550264 - L1PA7 LINE L1 0 6154 1211 2265 112 7 0 chr15 55145845 55146149 -30549605 - AluSx SINE Alu -6 306 1 22 70 0 0 chr15 55146174 55146217 -30549537 + AT_rich Low_complexity Low_complexity 1 43 0 542 276 50 64 chr15 55146217 55146620 -30549134 - L1MC4a LINE L1 -234 5887 5513 2216 116 0 19 chr15 55146825 55147143 -30548611 - AluSx SINE Alu 0 312 1 252 86 0 0 chr15 55147200 55147235 -30548519 + (T)n Simple_repeat Simple_repeat 1 35 0 2217 111 10 0 chr15 55148051 55148349 -30547405 - AluSx SINE Alu -11 301 1 291 245 61 10 chr15 55148620 55148718 -30547036 - MER5A DNA MER1_type 0 189 87 242 224 178 37 chr15 55148622 55148729 -30547025 + MER5A DNA MER1_type 17 138 -51 * 2407 95 3 0 chr15 55149428 55149733 -30546021 + AluSp SINE Alu 1 306 -7 231 204 20 0 chr15 55150107 55150156 -30545598 + G-rich Low_complexity Low_complexity 4 53 0 881 136 0 0 chr15 55151519 55151637 -30544117 - FLAM_C SINE Alu -25 118 1 1250 140 226 0 chr15 55151671 55151936 -30543818 + L1MB5 LINE L1 5850 6174 0 354 276 66 26 chr15 55153467 55153619 -30542135 + L2 LINE L2 1852 2009 -1305 503 203 133 7 chr15 55153705 55153848 -30541906 + MIR SINE MIR 13 173 -89 23 0 0 0 chr15 55154805 55154828 -30540926 + AT_rich Low_complexity Low_complexity 1 23 0 1253 137 4 53 chr15 55155009 55155235 -30540519 - MER20 DNA MER1_type 0 219 5 2253 93 36 3 chr15 55155527 55155829 -30539925 + AluSx SINE Alu 1 312 0 1566 186 32 53 chr15 55156620 55156997 -30538757 + MLT1A2 LTR MaLR 6 374 0 414 279 37 15 chr15 55156997 55157133 -30538621 - MIR3 SINE MIR -54 154 16 201 108 0 27 chr15 55157613 55157650 -30538104 - MIR3 SINE MIR -13 195 160 2237 115 7 3 chr15 55157700 55158004 -30537750 + AluSx SINE Alu 1 305 -7 558 315 106 19 chr15 55158206 55158574 -30537180 - MLT1J LTR MaLR -3 508 109 241 315 11 11 chr15 55159056 55159145 -30536609 - MIR SINE MIR -60 148 60 336 313 73 28 chr15 55209984 55210163 -30485591 - MIR3 SINE MIR -6 202 16 360 324 48 0 chr15 55210439 55210584 -30485170 + MIR3 SINE MIR 1 152 -56 191 368 111 27 chr15 55212015 55212276 -30483478 - L2 LINE L2 -32 3240 2958 348 221 44 111 chr15 55213371 55213552 -30482202 + MIR SINE MIR 13 181 -81 277 288 144 14 chr15 55213626 55213765 -30481989 - MIR3 SINE MIR -47 161 5 897 158 19 6 chr15 55214045 55214234 -30481520 + AluJo SINE Alu 123 313 0 1868 204 123 24 chr15 55214312 55214855 -30480899 - L1MC3 LINE L1 0 7785 7189 2387 88 0 0 chr15 55214859 55215165 -30480589 - AluSx SINE Alu -6 306 1 431 300 44 11 chr15 55215329 55215509 -30480245 - MIR3 SINE MIR -7 201 16 253 329 139 7 chr15 55216419 55216556 -30479198 + MIR SINE MIR 35 189 -73 2186 75 0 27 chr15 55216605 55216926 -30478828 + AluY SINE Alu 1 313 0 265 314 112 18 chr15 55216965 55217134 -30478620 - MIR SINE MIR -52 210 26 773 277 80 44 chr15 55217173 55217354 -30478400 - MLT1J2 LTR MaLR -5 445 272 2532 70 0 0 chr15 55217354 55217666 -30478088 - AluSx SINE Alu 0 312 1 773 277 80 44 chr15 55217666 55217874 -30477880 - MLT1J2 LTR MaLR -178 272 42 554 284 85 70 chr15 55219311 55219996 -30475758 - L1ME LINE L1 -4963 1298 560 252 317 99 21 chr15 55220128 55220270 -30475484 - MIR3 SINE MIR -38 170 18 333 296 77 71 chr15 55220805 55221197 -30474557 + L2 LINE L2 2475 2868 -446 197 277 21 0 chr15 55222118 55222165 -30473589 - L2 LINE L2 -1 3271 3224 426 158 178 0 chr15 55222225 55222326 -30473428 - MER63A DNA MER1_type 0 210 92 2778 63 3 31 chr15 55222404 55222616 -30473138 - THE1C LTR MaLR -5 370 172 1824 139 4 0 chr15 55222616 55222875 -30472879 + AluSg SINE Alu 44 303 -7 2778 63 3 31 chr15 55222875 55223043 -30472711 - THE1C LTR MaLR -203 172 1 1696 151 25 72 chr15 55223154 55223472 -30472282 + AluJo SINE Alu 10 312 0 357 159 0 0 chr15 55223473 55223536 -30472218 + GA-rich Low_complexity Low_complexity 4 66 0 438 108 0 0 chr15 55223591 55223656 -30472098 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 704 299 84 28 chr15 55223836 55224228 -30471526 + HAL1 LINE L1 303 716 -1791 478 302 198 25 chr15 55224294 55225102 -30470652 - L2 LINE L2 -112 3201 2203 180 276 81 0 chr15 55225453 55225540 -30470214 - L2 LINE L2 -112 3201 3108 366 230 45 0 chr15 55225604 55225720 -30470034 - MIR SINE MIR -62 146 22 211 208 52 78 chr15 55225856 55225933 -30469821 - MIR SINE MIR -117 91 17 274 302 147 23 chr15 55226690 55226819 -30468935 - MIR SINE MIR -79 183 39 1603 189 43 4 chr15 55227490 55227771 -30467983 - AluJo SINE Alu -20 292 1 496 356 151 17 chr15 55227796 55228506 -30467248 - L3 LINE CR1 -2 1575 771 2059 185 76 2 chr15 55228746 55229179 -30466575 - MLT1C LTR MaLR 0 467 3 228 318 152 26 chr15 55231603 55231630 -30464124 + MIR SINE MIR 86 108 -154 538 178 319 0 chr15 55231630 55231765 -30463989 + MER45A DNA AcHobo 1 178 0 228 318 152 26 chr15 55231765 55231888 -30463866 + MIR SINE MIR 108 255 -7 466 309 15 49 chr15 55232389 55232553 -30463201 - MIR SINE MIR -62 146 4 320 288 36 0 chr15 55233470 55233581 -30462173 - L2 LINE L2 -954 2360 2246 511 365 58 3 chr15 55233584 55233877 -30461877 + L3 LINE CR1 688 996 -581 190 317 96 48 chr15 55234036 55234244 -30461510 + L3 LINE CR1 1117 1334 -243 183 266 125 8 chr15 55234438 55234566 -30461188 + L3 LINE CR1 1435 1577 0 321 253 35 0 chr15 55234638 55234725 -30461029 - MIR SINE MIR -70 138 49 980 149 91 0 chr15 55235646 55235800 -30459954 - AluJb SINE Alu -16 296 129 226 277 31 0 chr15 55235852 55235917 -30459837 - L2 LINE L2 -2 3311 3245 313 261 119 15 chr15 55236129 55236263 -30459491 - MIR3 SINE MIR -29 179 32 754 212 191 43 chr15 55237508 55237786 -30457968 - MLT1I LTR MaLR -6 403 85 2534 63 0 3 chr15 55239622 55239921 -30455833 - AluY SINE Alu -12 299 2 465 306 48 11 chr15 55240515 55240701 -30455053 - MIR SINE MIR -36 226 34 204 79 0 53 chr15 55241161 55241199 -30454555 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2523 80 7 0 chr15 55241211 55241513 -30454241 - AluSx SINE Alu -8 304 1 1991 163 3 0 chr15 55241514 55241809 -30453945 - AluJb SINE Alu -16 296 1 413 253 40 60 chr15 55243161 55243311 -30452443 - MIR SINE MIR -79 183 37 180 328 107 23 chr15 55244037 55244214 -30451540 + MIR SINE MIR 24 215 -47 346 289 21 0 chr15 55245419 55245516 -30450238 + MIR SINE MIR 70 168 -94 280 278 33 22 chr15 55245614 55245704 -30450050 + MIR SINE MIR 157 247 -15 322 313 86 18 chr15 55245749 55245912 -30449842 - MIR3 SINE MIR -5 203 30 1041 213 18 9 chr15 55248850 55249071 -30446683 + MIR SINE MIR 30 252 -10 374 208 96 72 chr15 55249402 55249527 -30446227 + MIR3 SINE MIR 81 208 0 23 33 0 0 chr15 55250474 55250504 -30445250 + AT_rich Low_complexity Low_complexity 1 30 0 1702 137 107 0 chr15 55251094 55251364 -30444390 - AluJb SINE Alu -7 305 7 2290 113 0 10 chr15 55252522 55252824 -30442930 - AluSq SINE Alu -14 299 1 2389 184 11 15 chr15 55253452 55254292 -30441462 + L1M3 LINE L1 4869 5701 -479 1878 148 20 13 chr15 55254316 55254619 -30441135 - AluSx SINE Alu -7 305 1 4453 164 27 61 chr15 55254619 55255767 -30439987 + L1MB7 LINE L1 5080 6183 -1 390 280 60 11 chr15 55255895 55256074 -30439680 - MIR SINE MIR -58 204 18 32 0 0 0 chr15 55256449 55256481 -30439273 + AT_rich Low_complexity Low_complexity 1 32 0 202 229 12 12 chr15 55256481 55256564 -30439190 + A-rich Low_complexity Low_complexity 1 83 0 47 61 0 0 chr15 55256570 55256652 -30439102 + AT_rich Low_complexity Low_complexity 1 82 0 2083 148 0 3 chr15 55257092 55257389 -30438365 - AluJb SINE Alu -16 296 1 2124 131 0 16 chr15 55257470 55257776 -30437978 - AluSx SINE Alu -11 301 1 22 0 0 0 chr15 55258349 55258371 -30437383 + AT_rich Low_complexity Low_complexity 1 22 0 2546 62 0 10 chr15 55259534 55259842 -30435912 - AluY SINE Alu -6 305 1 24 0 0 0 chr15 55260527 55260551 -30435203 + AT_rich Low_complexity Low_complexity 1 24 0 2097 120 41 0 chr15 55260556 55260848 -30434906 + AluSx SINE Alu 1 304 -8 2524 54 0 3 chr15 55260850 55261182 -30434572 + AluY SINE Alu 1 331 0 778 173 0 0 chr15 55261369 55261502 -30434252 + AluJo/FLAM SINE Alu 1 133 -169 2034 147 3 0 chr15 55261502 55261788 -30433966 + AluSx SINE Alu 15 301 -11 1724 157 8 4 chr15 55262455 55262717 -30433037 - AluJb SINE Alu -27 285 23 2293 68 0 7 chr15 55263005 55263286 -30432468 - AluY SINE Alu -9 302 24 862 117 0 0 chr15 55264255 55264383 -30431371 + AluY SINE Alu 136 263 -48 389 291 139 14 chr15 55265038 55265261 -30430493 - MIR SINE MIR -6 256 6 193 226 247 11 chr15 55265805 55265898 -30429856 - MIR SINE MIR -78 130 16 449 158 0 12 chr15 55266444 55266526 -30429228 - MER45A DNA AcHobo 0 178 98 2604 50 0 3 chr15 55266526 55266827 -30428927 + AluY SINE Alu 1 300 -11 1232 13 7 0 chr15 55266827 55266978 -30428776 + L1PA4 LINE L1 6001 6152 -3 241 261 45 45 chr15 55267051 55267071 -30428683 - MER45A DNA AcHobo -1456 125 106 2188 123 7 0 chr15 55267071 55267373 -30428381 + AluSx SINE Alu 1 304 -8 241 261 45 45 chr15 55267373 55267440 -30428314 - MER45A DNA AcHobo -1474 107 38 1931 147 3 3 chr15 55267860 55268145 -30427609 + AluSx SINE Alu 1 285 -27 666 117 0 0 chr15 55268145 55268265 -30427489 + (TA)n Simple_repeat Simple_repeat 2 121 0 760 189 14 14 chr15 55269631 55269774 -30425980 + AluSg/x SINE Alu 155 297 -12 2317 100 7 3 chr15 55269857 55270166 -30425588 + AluY SINE Alu 1 310 -1 234 0 0 0 chr15 55270436 55270462 -30425292 + (TG)n Simple_repeat Simple_repeat 2 27 0 228 216 0 0 chr15 55270462 55270513 -30425241 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1083 221 147 20 chr15 55270544 55271186 -30424568 - L1MD3 LINE L1 -9 7986 7243 1986 151 0 3 chr15 55271186 55271490 -30424264 - AluSx SINE Alu -9 303 1 2551 230 25 22 chr15 55271499 55272087 -30423667 - L1MC4 LINE L1 -954 7088 6499 1064 163 131 43 chr15 55272222 55272590 -30423164 - L1ME LINE L1 -589 5575 5179 449 207 54 0 chr15 55272586 55272697 -30423057 - L1ME LINE L1 -2147 3999 3883 * 1939 116 110 7 chr15 55272697 55273144 -30422610 - LTR14B LTR ERVK 0 608 1 912 316 9 9 chr15 55273149 55273478 -30422276 - HERVKC4 LTR ERVK -6 5256 4928 524 48 0 0 chr15 55273521 55273584 -30422170 - HERVK14 LTR ERVK -61 5884 5822 399 121 0 17 chr15 55273584 55273642 -30422112 - MER41C LTR ERV1 -493 61 5 1168 138 0 42 chr15 55273649 55273838 -30421916 - HERVK14 LTR ERVK -190 5755 5575 1072 228 0 36 chr15 55273838 55273870 -30421884 - MER41C-int LTR ERV1 0 7753 7541 5809 81 11 46 chr15 55273870 55274748 -30421006 - HERVK14 LTR ERVK -366 5579 4803 * 19922 66 14 6 chr15 55274733 55275460 -30420294 - HERVK14 LTR ERVK -1884 4061 3341 2356 81 0 3 chr15 55275460 55275755 -30419999 - AluY SINE Alu -17 294 1 19922 66 14 6 chr15 55275755 55277543 -30418211 - HERVK14 LTR ERVK -2604 3341 1526 2170 80 0 30 chr15 55278589 55278890 -30416864 - AluY SINE Alu -19 292 1 4051 199 88 13 chr15 55279014 55280037 -30415717 - L1MC4 LINE L1 0 8042 6943 271 55 110 164 chr15 55280225 55280274 -30415480 + L1MB2 LINE L1 6075 6120 -51 1808 163 10 0 chr15 55280274 55280568 -30415186 + AluJb SINE Alu 1 297 -15 271 55 110 164 chr15 55280568 55280591 -30415163 + L1MB2 LINE L1 6120 6143 -28 2425 94 3 0 chr15 55281494 55281802 -30413952 + AluSg SINE Alu 1 309 -1 678 158 50 33 chr15 55282046 55282166 -30413588 + FLAM_A SINE Alu 1 122 -11 415 305 52 19 chr15 55282204 55282417 -30413337 - L2 LINE L2 -1357 1957 1738 426 323 40 0 chr15 55282694 55282818 -30412936 - L2 LINE L2 -5 3267 3139 2327 85 10 0 chr15 55282989 55283295 -30412459 - AluY SINE Alu -2 309 1 1277 199 8 25 chr15 55283378 55283614 -30412140 - AluJo SINE Alu -12 300 69 5590 135 43 5 chr15 55283616 55284728 -30411026 - L1PA15 LINE L1 -20 6145 5005 2195 115 0 10 chr15 55284729 55285034 -30410720 - AluSx SINE Alu -9 303 2 183 42 0 0 chr15 55285042 55285066 -30410688 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 791 182 0 0 chr15 55285083 55285204 -30410550 + FLAM_A SINE Alu 6 126 -16 5456 147 69 32 chr15 55285205 55286315 -30409439 - L1MC1 LINE L1 0 6333 5184 1879 134 18 0 chr15 55286323 55286628 -30409126 - AluSx SINE Alu 0 310 1 200 316 76 13 chr15 55286663 55286742 -30409012 - L2 LINE L2 -21 3251 3168 870 164 178 44 chr15 55286882 55287107 -30408647 - MIR SINE MIR -5 257 3 592 317 116 46 chr15 55287107 55287900 -30407854 - L2 LINE L2 -225 3047 2201 502 311 75 65 chr15 55288062 55288477 -30407277 - L2 LINE L2 -1559 1755 1332 1751 188 3 0 chr15 55288477 55288775 -30406979 + AluJo SINE Alu 4 302 -10 502 311 75 65 chr15 55288775 55288893 -30406861 - L2 LINE L2 -1982 1332 1217 604 225 136 31 chr15 55289364 55289555 -30406199 + MIR SINE MIR 12 222 -40 2127 128 3 3 chr15 55289714 55290011 -30405743 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 55290216 55290237 -30405517 + AT_rich Low_complexity Low_complexity 1 21 0 229 96 39 19 chr15 55290650 55290702 -30405052 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 184 354 24 39 chr15 55290883 55291010 -30404744 + L2 LINE L2 1086 1210 -2104 2255 80 6 26 chr15 55291810 55292123 -30403631 + AluY SINE Alu 1 307 -4 24 32 0 0 chr15 55292176 55292207 -30403547 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chr15 55292931 55292958 -30402796 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1900 164 3 0 chr15 55293208 55293495 -30402259 + AluSx SINE Alu 1 288 -24 2156 108 7 0 chr15 55294907 55295202 -30400552 - AluSq SINE Alu -16 297 1 2406 64 6 10 chr15 55296277 55296589 -30399165 - AluY SINE Alu 0 311 1 278 326 164 36 chr15 55296644 55296948 -30398806 + L2 LINE L2 2247 2589 -725 246 186 0 57 chr15 55297014 55297084 -30398670 - L1ME4a LINE L1 0 6121 6056 1686 182 3 10 chr15 55297244 55297546 -30398208 - AluJo SINE Alu -12 300 1 2125 141 3 0 chr15 55298325 55298631 -30397123 + AluSq SINE Alu 1 307 -6 24 32 0 0 chr15 55299236 55299267 -30396487 + AT_rich Low_complexity Low_complexity 1 31 0 239 260 151 0 chr15 55299579 55299652 -30396102 + MIR SINE MIR 42 125 -83 1718 181 3 16 chr15 55300841 55301144 -30394610 - AluJb SINE Alu -13 299 1 2020 126 23 23 chr15 55302106 55302416 -30393338 + AluSx SINE Alu 1 310 -2 1771 159 0 47 chr15 55302585 55302906 -30392848 - AluJo SINE Alu -2 310 5 302 268 193 38 chr15 55303768 55304010 -30391744 + L1MC4a LINE L1 5574 5862 -1946 1707 148 43 46 chr15 55304010 55304314 -30391440 - AluJb SINE Alu -9 303 1 302 268 193 38 chr15 55304314 55304336 -30391418 + L1MC4a LINE L1 5862 5879 -1929 1408 234 0 0 chr15 55304610 55304879 -30390875 + AluJo SINE Alu 1 269 -43 1854 113 0 0 chr15 55304880 55305127 -30390627 + AluSx SINE Alu 44 290 -22 463 99 66 77 chr15 55305775 55305866 -30389888 + FLAM_A SINE Alu 51 140 -2 2616 162 91 40 chr15 55305871 55306361 -30389393 - L1 LINE L1 -2035 4111 3587 2302 99 3 0 chr15 55306361 55306655 -30389099 - AluSp SINE Alu -18 295 1 2616 162 91 40 chr15 55306655 55306733 -30389021 - L1 LINE L1 -2559 3587 3514 1008 70 0 0 chr15 55306734 55306862 -30388892 - AluSp/q SINE Alu 0 313 186 651 305 22 18 chr15 55306865 55307088 -30388666 - L1M2c LINE L1 -5250 1539 1316 1786 289 44 29 chr15 55307418 55308034 -30387720 - L1M2c LINE L1 -6154 635 11 2317 61 3 17 chr15 55308066 55308362 -30387392 - AluY SINE Alu -19 292 1 2397 106 0 0 chr15 55308363 55308675 -30387079 - AluSx SINE Alu 0 312 1 2352 85 0 7 chr15 55308922 55309215 -30386539 - AluSc SINE Alu -18 291 1 286 331 95 12 chr15 55309257 55309426 -30386328 - L3 LINE CR1 -14 1563 1381 1046 165 0 0 chr15 55309426 55309584 -30386170 - FRAM SINE Alu -18 158 1 663 287 94 65 chr15 55309662 55310139 -30385615 - L3 LINE CR1 -312 1265 775 * 3057 222 67 93 chr15 55310122 55311535 -30384219 + L2 LINE L2 1932 3313 0 2394 199 54 17 chr15 55311558 55312041 -30383713 + MLT1D LTR MaLR 5 505 0 398 303 30 35 chr15 55314131 55314357 -30381397 + MIR3 SINE MIR 20 237 -25 449 223 60 70 chr15 55314882 55315097 -30380657 + AluJb SINE Alu 100 312 0 2110 141 0 0 chr15 55315145 55315449 -30380305 - AluSx SINE Alu -8 304 1 1136 185 117 21 chr15 55315486 55315767 -30379987 - MLT1F LTR MaLR 0 542 235 261 119 0 0 chr15 55315823 55315865 -30379889 + (TC)n Simple_repeat Simple_repeat 1 42 0 532 104 0 0 chr15 55315865 55315932 -30379822 - AluY SINE Alu -19 290 224 1465 67 6 0 chr15 55315935 55316115 -30379639 - AluY SINE Alu -130 181 1 1560 171 4 25 chr15 55316178 55316459 -30379295 + AluJb SINE Alu 20 294 -18 1233 102 49 24 chr15 55316481 55316686 -30379068 + L1PA16 LINE L1 5956 6165 -1 222 219 31 78 chr15 55317654 55317718 -30378036 + L2 LINE L2 3204 3264 -49 1849 167 3 19 chr15 55317726 55318043 -30377711 + AluSx SINE Alu 1 312 0 709 245 41 62 chr15 55318066 55318356 -30377398 - L1ME LINE L1 -436 5685 5402 1207 217 121 23 chr15 55318356 55318893 -30376861 + MLT1E2 LTR MaLR 1 626 0 1729 140 16 57 chr15 55319059 55319374 -30376380 - AluJb SINE Alu -10 302 1 2271 117 3 0 chr15 55319384 55319691 -30376063 - AluSx SINE Alu -4 308 1 231 158 26 0 chr15 55319692 55319730 -30376024 - MER63 DNA MER1_type -1022 39 1 505 300 252 7 chr15 55319751 55320061 -30375693 + MLT1L LTR MaLR 142 527 -88 2420 57 13 3 chr15 55320092 55320393 -30375361 - AluY SINE Alu -7 304 1 359 235 0 0 chr15 55320421 55320489 -30375265 + L2 LINE L2 3244 3311 -2 1041 255 97 33 chr15 55320609 55321216 -30374538 + L2 LINE L2 2493 3228 -85 191 200 0 20 chr15 55321230 55321280 -30374474 + L2 LINE L2 2927 2975 -338 1795 141 57 3 chr15 55321318 55321601 -30374153 - AluJo SINE Alu -14 298 1 2190 108 0 13 chr15 55322386 55322692 -30373062 - AluSx SINE Alu -10 302 1 1860 166 0 28 chr15 55322753 55323072 -30372682 + AluSx SINE Alu 1 310 -2 324 252 43 17 chr15 55323243 55323358 -30372396 - HERV16 LTR ERVL -90 4906 4789 373 245 29 0 chr15 55323557 55323659 -30372095 - HERV16 LTR ERVL -778 4986 4882 3174 325 58 33 chr15 55323663 55325526 -30370228 - HERV16 LTR ERVL -1009 4755 2847 307 308 11 2 chr15 55325536 55325658 -30370096 - HERV16 LTR ERVL -2331 3323 3219 * 1565 295 14 7 chr15 55325656 55326097 -30369657 - HERV16 LTR ERVL -2204 2792 2349 456 276 70 0 chr15 55326125 55326281 -30369473 - HERV16 LTR ERVL -4596 400 234 289 241 36 0 chr15 55326516 55326599 -30369155 - LTR16A LTR ERVL -64 386 301 769 150 43 14 chr15 55326642 55326782 -30368972 + Cheshire DNA MER1_type 518 661 -1759 1780 131 87 4 chr15 55326785 55327060 -30368694 - AluSx SINE Alu -14 298 1 529 153 0 0 chr15 55327103 55327175 -30368579 + AluS SINE Alu 2 73 -240 232 201 21 56 chr15 55328173 55328317 -30367437 + (GTGTG)n Simple_repeat Simple_repeat 1 139 0 198 103 0 0 chr15 55328339 55328368 -30367386 + (TA)n Simple_repeat Simple_repeat 2 30 0 398 303 30 35 chr15 55328745 55328971 -30366783 - MIR3 SINE MIR -25 237 20 2462 188 54 17 chr15 55331061 55331544 -30364210 - MLT1D LTR MaLR 0 505 5 3067 222 66 93 chr15 55331567 55332981 -30362773 - L2 LINE L2 0 3313 1932 663 287 94 65 chr15 55332964 55333441 -30362313 + L3 LINE CR1 775 1265 -312 * 1046 165 0 0 chr15 55333519 55333677 -30362077 + FRAM SINE Alu 1 158 -18 286 331 95 12 chr15 55333677 55333846 -30361908 + L3 LINE CR1 1381 1563 -14 2352 85 0 7 chr15 55333888 55334181 -30361573 + AluSc SINE Alu 1 291 -18 2380 109 0 0 chr15 55334428 55334740 -30361014 + AluSx SINE Alu 1 312 0 2244 77 10 19 chr15 55334741 55335054 -30360700 + AluY SINE Alu 1 310 -1 1809 180 7 0 chr15 55335169 55335464 -30360290 - AluJo SINE Alu -15 297 1 186 111 28 28 chr15 55335872 55335908 -30359846 + MIR SINE MIR 104 139 -123 781 314 166 12 chr15 55336067 55336692 -30359062 + L2 LINE L2 2592 3309 -4 252 333 64 25 chr15 55337140 55337344 -30358410 - L2 LINE L2 -813 2501 2290 28 29 0 0 chr15 55337426 55337461 -30358293 + AT_rich Low_complexity Low_complexity 1 35 0 1247 193 0 57 chr15 55337663 55337927 -30357827 + AluJb SINE Alu 1 249 -63 189 257 114 29 chr15 55337929 55337999 -30357755 - MIR SINE MIR -110 98 23 1569 253 136 32 chr15 55338768 55339306 -30356448 + MLT1G1 LTR MaLR 2 595 0 402 289 156 47 chr15 55339353 55339609 -30356145 + L3 LINE CR1 1271 1554 -23 199 341 95 8 chr15 55339607 55339733 -30356021 - L2 LINE L2 -793 2521 2385 * 7702 118 22 5 chr15 55339915 55341885 -30353869 - L1MA2 LINE L1 -4 6300 4293 1950 241 115 77 chr15 55341934 55342225 -30353529 + L1MEc LINE L1 1974 2252 -3963 2144 112 0 3 chr15 55342225 55342521 -30353233 + AluY SINE Alu 1 295 -16 1950 241 115 77 chr15 55342521 55343245 -30352509 + L1MEc LINE L1 2252 2947 -3268 5575 57 19 4 chr15 55343245 55343925 -30351829 + L1PA8 LINE L1 5482 6171 -1 1950 241 115 77 chr15 55343925 55343950 -30351804 + L1MEc LINE L1 2947 2970 -3245 974 211 24 0 chr15 55343950 55344116 -30351638 + FAM SINE Alu 2 171 -4 1950 241 115 77 chr15 55344116 55344308 -30351446 + L1MEc LINE L1 2970 3153 -3062 510 111 0 0 chr15 55344308 55344380 -30351374 + L1MA9 LINE L1 6237 6308 -4 1950 241 115 77 chr15 55344380 55344992 -30350762 + L1MEc LINE L1 3153 3850 -2365 26 30 0 0 chr15 55345186 55345219 -30350535 + AT_rich Low_complexity Low_complexity 1 33 0 308 275 0 14 chr15 55345331 55345400 -30350354 - L2 LINE L2 -218 3054 2987 2323 233 67 11 chr15 55345815 55346446 -30349308 + L1MC4 LINE L1 7235 7900 -142 1426 208 35 10 chr15 55346455 55346744 -30349010 + AluJo SINE Alu 1 296 -16 1956 213 60 35 chr15 55348153 55348674 -30347080 + L1ME1 LINE L1 5574 6107 -59 790 228 19 0 chr15 55348784 55348946 -30346808 + AluSg/x SINE Alu 131 295 -15 542 257 110 73 chr15 55348954 55349254 -30346500 + L1ME LINE L1 5449 5759 -362 992 134 12 29 chr15 55349366 55349537 -30346217 + FRAM SINE Alu 4 171 -5 21 0 0 0 chr15 55349563 55349584 -30346170 + AT_rich Low_complexity Low_complexity 1 21 0 410 301 98 47 chr15 55349749 55350025 -30345729 + L2 LINE L2 2442 2731 -583 488 281 177 53 chr15 55350202 55350348 -30345406 - LTR16C LTR ERVL -2 489 362 1887 112 0 15 chr15 55350348 55350645 -30345109 + AluSx SINE Alu 30 322 0 488 281 177 53 chr15 55350645 55350851 -30344903 - LTR16C LTR ERVL -129 362 90 209 353 220 0 chr15 55350978 55351151 -30344603 + L2 LINE L2 3039 3249 -23 210 191 0 0 chr15 55352381 55352423 -30343331 + (TAGGG)n Simple_repeat Simple_repeat 2 43 0 249 308 231 0 chr15 55352654 55352784 -30342970 + MIR3 SINE MIR 46 205 -3 286 271 178 66 chr15 55353170 55353428 -30342326 - MLT1K LTR MaLR -228 360 74 505 149 0 14 chr15 55353538 55353612 -30342142 + tRNA-Lys-AAG tRNA tRNA 1 73 -3 204 184 0 0 chr15 55353640 55353689 -30342065 + A-rich Low_complexity Low_complexity 1 49 0 506 254 159 32 chr15 55354793 55355013 -30340741 - MIR SINE MIR -13 249 2 246 176 0 0 chr15 55356313 55356364 -30339390 + A-rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr15 55356568 55356593 -30339161 + AT_rich Low_complexity Low_complexity 1 25 0 217 341 0 23 chr15 55356674 55356806 -30338948 + CT-rich Low_complexity Low_complexity 4 132 0 1313 234 145 40 chr15 55356971 55357420 -30338334 - MLT1G LTR MaLR -39 551 56 707 254 68 18 chr15 55357891 55358111 -30337643 + MIR SINE MIR 21 251 -11 2223 111 0 7 chr15 55360038 55360336 -30335418 - AluSx SINE Alu -16 296 1 31 0 0 0 chr15 55360391 55360422 -30335332 + AT_rich Low_complexity Low_complexity 1 31 0 1757 171 31 0 chr15 55360800 55361092 -30334662 - AluJb SINE Alu -11 301 1 2239 74 13 20 chr15 55361250 55361548 -30334206 + AluSp SINE Alu 1 296 -17 2095 122 3 3 chr15 55361635 55361929 -30333825 - AluSg SINE Alu -16 294 1 2384 95 0 0 chr15 55362696 55363002 -30332752 + AluSx SINE Alu 7 312 0 642 245 217 10 chr15 55363011 55363301 -30332453 - L1ME4a LINE L1 -38 6083 5734 2216 91 14 0 chr15 55364101 55364398 -30331356 - AluSq SINE Alu -12 301 1 562 256 96 4 chr15 55364411 55364641 -30331113 - L1ME4a LINE L1 -797 5349 5099 213 39 0 0 chr15 55364841 55364867 -30330887 + (TA)n Simple_repeat Simple_repeat 2 27 0 1008 210 0 0 chr15 55364867 55365029 -30330725 - FAM SINE Alu -13 162 1 2259 107 7 3 chr15 55365153 55365462 -30330292 + AluY SINE Alu 1 310 -1 234 0 0 0 chr15 55365732 55365758 -30329996 + (TG)n Simple_repeat Simple_repeat 2 27 0 228 216 0 0 chr15 55365758 55365809 -30329945 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1083 221 147 20 chr15 55365840 55366482 -30329272 - L1MD3 LINE L1 -9 7986 7243 2103 142 0 0 chr15 55366482 55366785 -30328969 - AluSx SINE Alu -9 303 1 2551 230 25 22 chr15 55366794 55367382 -30328372 - L1MC4 LINE L1 -954 7088 6499 1064 163 131 43 chr15 55367517 55367885 -30327869 - L1ME LINE L1 -589 5575 5179 449 207 54 0 chr15 55367881 55367992 -30327762 - L1ME LINE L1 -2147 3999 3883 * 1939 116 110 7 chr15 55367992 55368439 -30327315 - LTR14B LTR ERVK 0 608 1 912 316 9 9 chr15 55368444 55368773 -30326981 - HERVKC4 LTR ERVK -6 5256 4928 524 48 0 0 chr15 55368816 55368879 -30326875 - HERVK14 LTR ERVK -61 5884 5822 413 129 0 16 chr15 55368879 55368941 -30326813 - MER41C LTR ERV1 -493 61 1 1392 88 0 42 chr15 55368941 55369134 -30326620 - HERVK14 LTR ERVK -186 5759 5575 1248 182 4 36 chr15 55369134 55369166 -30326588 - MER41C-int LTR ERV1 0 5946 5729 5809 81 11 46 chr15 55369166 55370044 -30325710 - HERVK14 LTR ERVK -366 5579 4803 * 22794 66 13 5 chr15 55370029 55370756 -30324998 - HERVK14 LTR ERVK -1884 4061 3342 2356 81 0 3 chr15 55370756 55371051 -30324703 - AluY SINE Alu -17 294 1 22794 66 13 5 chr15 55371051 55374348 -30321406 - HERVK14 LTR ERVK -2603 3342 1 1869 81 33 93 chr15 55374348 55374680 -30321074 - LTR14B LTR ERVK 0 608 46 908 271 129 45 chr15 55374710 55374892 -30320862 - L1MDa LINE L1 -4636 2305 2140 2480 72 3 0 chr15 55374892 55375198 -30320556 + AluY SINE Alu 1 307 -4 908 271 129 45 chr15 55375198 55375719 -30320035 - L1MDa LINE L1 -4801 2140 1543 535 151 70 12 chr15 55375719 55375805 -30319949 - AluJ/FLAM SINE Alu -220 92 2 623 126 118 0 chr15 55375806 55375925 -30319829 - Charlie1 DNA MER1_type -587 2174 2042 198 0 0 0 chr15 55379480 55379502 -30316252 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 6938 29 1 2 chr15 55379502 55380309 -30315445 - L1PA3 LINE L1 -13 6142 5337 5221 207 95 30 chr15 55380594 55380616 -30315138 - Charlie1 DNA MER1_type -706 2055 2036 1805 134 26 116 chr15 55380616 55380996 -30314758 - MER7A DNA MER2_type -1 345 2 5221 207 95 30 chr15 55380996 55381390 -30314364 - Charlie1 DNA MER1_type -725 2036 1669 2315 117 0 0 chr15 55381390 55381698 -30314056 - AluSq SINE Alu -5 308 1 5221 207 95 30 chr15 55381698 55383149 -30312605 - Charlie1 DNA MER1_type -1092 1669 1 1367 237 70 63 chr15 55383189 55383763 -30311991 - L1MDa LINE L1 -5468 1463 886 901 288 92 29 chr15 55383787 55384166 -30311588 - L3 LINE CR1 -483 1094 692 25 31 0 0 chr15 55384296 55384328 -30311426 + AT_rich Low_complexity Low_complexity 1 32 0 599 203 258 26 chr15 55384540 55384596 -30311158 - L1MC4 LINE L1 0 8042 8000 1101 206 0 0 chr15 55384596 55384771 -30310983 + FAM SINE Alu 1 175 0 599 203 258 26 chr15 55384771 55385059 -30310695 - L1MC4 LINE L1 -42 8000 7618 609 148 77 84 chr15 55385071 55385226 -30310528 - L1MDa LINE L1 -5494 929 776 629 179 17 145 chr15 55385308 55385487 -30310267 + AluJb SINE Alu 127 282 -30 37 69 0 0 chr15 55386648 55386720 -30309034 + AT_rich Low_complexity Low_complexity 1 72 0 1711 152 30 27 chr15 55386833 55387129 -30308625 + AluJo SINE Alu 1 297 -15 249 303 54 49 chr15 55387445 55387630 -30308124 - L1ME LINE L1 -278 5884 5699 1264 247 86 49 chr15 55387775 55387949 -30307805 - L1M3 LINE L1 -708 5463 5297 1520 123 0 9 chr15 55387949 55388169 -30307585 - AluJb SINE Alu -11 301 84 1264 247 86 49 chr15 55388169 55388824 -30306930 - L1M3 LINE L1 -874 5297 4587 2461 76 0 16 chr15 55389979 55390295 -30305459 - AluY SINE Alu 0 311 1 499 242 103 12 chr15 55390297 55390462 -30305292 - L1M3 LINE L1 -1989 4157 3978 877 228 0 130 chr15 55390470 55390746 -30305008 + MIR SINE MIR 2 241 -21 2188 104 7 0 chr15 55392660 55392948 -30302806 + AluSp SINE Alu 1 290 -23 326 267 109 0 chr15 55393048 55393149 -30302605 - L1ME LINE L1 -517 5645 5534 448 173 37 0 chr15 55393219 55393300 -30302454 + L1MB3 LINE L1 6054 6137 -46 2687 43 0 0 chr15 55393303 55393608 -30302146 + AluY SINE Alu 1 305 -6 2229 107 3 0 chr15 55393616 55393934 -30301820 + AluSp SINE Alu 1 319 0 2167 121 0 10 chr15 55393973 55394286 -30301468 - AluSg SINE Alu 0 310 1 318 243 0 0 chr15 55394289 55394359 -30301395 - L1MC3 LINE L1 -38 7747 7678 2723 162 71 32 chr15 55394460 55394501 -30301253 - L1MB4 LINE L1 0 6180 6142 1691 158 92 0 chr15 55394501 55394785 -30300969 - AluSx SINE Alu 0 312 3 2723 162 71 32 chr15 55394785 55395331 -30300423 - L1MB4 LINE L1 -38 6142 5570 300 301 13 9 chr15 55395439 55395594 -30300160 + MIR3 SINE MIR 3 196 -12 2339 75 0 3 chr15 55395667 55395959 -30299795 + AluSc SINE Alu 1 291 -18 243 263 88 18 chr15 55396132 55396246 -30299508 + LTR67 LTR ERVL 436 557 0 283 303 143 11 chr15 55396255 55396430 -30299324 + L1ME3A LINE L1 5386 5583 -2202 376 300 51 33 chr15 55396516 55396789 -30298965 + L1ME3A LINE L1 5579 5856 -314 28 29 0 0 chr15 55397165 55397200 -30298554 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr15 55397261 55397284 -30298470 + AT_rich Low_complexity Low_complexity 1 23 0 231 265 72 0 chr15 55397307 55397390 -30298364 + L1P LINE L1 5318 5406 -745 2232 107 0 49 chr15 55397411 55397738 -30298016 + AluSx SINE Alu 1 311 -1 230 116 23 0 chr15 55397738 55397781 -30297973 + L1MB4 LINE L1 6134 6177 -3 412 239 129 13 chr15 55398433 55398584 -30297170 - MIR3 SINE MIR -1 207 43 442 248 117 7 chr15 55400790 55400927 -30294827 + MIR3 SINE MIR 38 189 -19 21 36 0 0 chr15 55401570 55401598 -30294156 + AT_rich Low_complexity Low_complexity 1 28 0 342 45 0 0 chr15 55401907 55401951 -30293803 + (TG)n Simple_repeat Simple_repeat 2 45 0 258 212 222 20 chr15 55402160 55402259 -30293495 - MIR3 SINE MIR -4 204 86 279 319 106 0 chr15 55402750 55402863 -30292891 - L2 LINE L2 -1 3271 3147 719 209 0 27 chr15 55402886 55403034 -30292720 - L2 LINE L2 0 3313 3170 313 331 100 0 chr15 55403046 55403266 -30292488 - L2 LINE L2 -334 2938 2699 355 308 0 92 chr15 55404746 55404876 -30290878 - L2 LINE L2 -2 3270 3153 2271 108 0 0 chr15 55405319 55405614 -30290140 + AluSg SINE Alu 1 295 -15 2349 88 3 0 chr15 55405757 55406052 -30289702 + AluSq SINE Alu 1 296 -17 480 277 18 0 chr15 55406596 55406708 -30289046 + L2 LINE L2 3154 3267 -5 27 0 0 0 chr15 55406992 55407019 -30288735 + AT_rich Low_complexity Low_complexity 1 27 0 330 256 12 12 chr15 55407589 55407675 -30288079 + MIR SINE MIR 56 141 -67 286 285 145 47 chr15 55408941 55409113 -30286641 - MIR SINE MIR -41 221 33 1483 203 53 53 chr15 55409269 55409643 -30286111 + MLT1A2 LTR MaLR 1 374 0 4968 107 48 22 chr15 55409935 55410705 -30285049 - L1PB4 LINE L1 -8 6148 5359 300 180 21 16 chr15 55410737 55410816 -30284938 + L1ME3A LINE L1 6039 6118 -46 351 0 0 0 chr15 55410840 55410879 -30284875 + (TG)n Simple_repeat Simple_repeat 1 39 0 312 313 48 0 chr15 55410919 55411002 -30284752 - MIR SINE MIR -85 123 37 24 91 0 0 chr15 55414451 55414517 -30281237 + AT_rich Low_complexity Low_complexity 1 66 0 1596 123 127 11 chr15 55415280 55415548 -30280206 + AluSg1 SINE Alu 1 299 -10 693 241 51 95 chr15 55415604 55415920 -30279834 - L2 LINE L2 0 3313 3012 270 0 0 0 chr15 55417633 55417663 -30278091 + (CA)n Simple_repeat Simple_repeat 1 30 0 1119 165 12 0 chr15 55418817 55418987 -30276767 - FAM SINE Alu -1 174 3 257 329 29 36 chr15 55428664 55428801 -30266953 - MIR3 SINE MIR -16 192 57 28 71 0 0 chr15 55429528 55429584 -30266170 + GC_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr15 55431709 55431738 -30264016 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr15 55432016 55432040 -30263714 + (CTG)n Simple_repeat Simple_repeat 3 26 0 204 167 0 0 chr15 55432041 55432089 -30263665 + CT-rich Low_complexity Low_complexity 3 50 0 2544 71 0 0 chr15 55432889 55433199 -30262555 - AluSg SINE Alu 0 310 1 742 236 37 11 chr15 55433393 55433584 -30262170 + MIR SINE MIR 63 258 -4 428 283 139 14 chr15 55434164 55434387 -30261367 - MIR SINE MIR -6 256 6 215 238 219 19 chr15 55434931 55435036 -30260718 - MIR3 SINE MIR -78 130 5 207 243 288 18 chr15 55435280 55435391 -30260363 - MIR3 SINE MIR -65 143 3 447 158 0 12 chr15 55435571 55435653 -30260101 - MER45A DNA AcHobo 0 178 98 2590 50 0 3 chr15 55435653 55435954 -30259800 + AluY SINE Alu 1 300 -11 1295 13 7 0 chr15 55435954 55436105 -30259649 + L1PA4 LINE L1 6001 6152 -3 2182 123 7 0 chr15 55436198 55436500 -30259254 + AluSx SINE Alu 1 304 -8 186 281 188 0 chr15 55436579 55436675 -30259079 - MIR SINE MIR -92 170 57 1922 147 3 3 chr15 55436987 55437272 -30258482 + AluSx SINE Alu 1 285 -27 651 108 0 0 chr15 55437272 55437392 -30258362 + (TA)n Simple_repeat Simple_repeat 2 121 0 196 225 25 0 chr15 55440167 55440207 -30255547 - L2 LINE L2 -18 3254 3214 483 285 229 28 chr15 55440236 55440287 -30255467 - MLT1L LTR MaLR -2 613 574 1844 159 20 7 chr15 55440287 55440588 -30255166 + AluSx SINE Alu 1 305 -7 483 285 229 28 chr15 55440588 55440929 -30254825 - MLT1L LTR MaLR -41 574 142 2311 117 3 0 chr15 55440989 55441296 -30254458 + AluSx SINE Alu 1 308 -4 1780 140 16 57 chr15 55441306 55441621 -30254133 + AluJb SINE Alu 1 302 -10 1132 217 121 23 chr15 55441787 55442324 -30253430 - MLT1E2 LTR MaLR 0 626 1 630 245 41 62 chr15 55442324 55442614 -30253140 + L1ME LINE L1 5402 5685 -436 1907 170 3 19 chr15 55442637 55442954 -30252800 - AluSx SINE Alu 0 312 1 224 219 31 78 chr15 55442962 55443026 -30252728 - L2 LINE L2 -49 3264 3204 1168 102 49 24 chr15 55443994 55444199 -30251555 - L1PA16 LINE L1 -1 6165 5956 1625 181 0 21 chr15 55444221 55444502 -30251252 - AluJb SINE Alu -18 294 20 1488 67 6 0 chr15 55444565 55444745 -30251009 + AluY SINE Alu 1 181 -130 493 188 0 0 chr15 55444748 55444833 -30250921 + AluY SINE Alu 227 311 -1 1122 188 116 11 chr15 55444913 55445190 -30250564 + MLT1F LTR MaLR 235 540 -2 2158 141 0 0 chr15 55445232 55445536 -30250218 + AluSx SINE Alu 1 304 -8 2055 152 3 0 chr15 55445564 55445909 -30249845 - AluJb SINE Alu 0 346 1 3513 148 11 56 chr15 55446912 55447414 -30248340 - L1MA10 LINE L1 -12 6322 5799 183 42 0 0 chr15 55447414 55447438 -30248316 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2117 125 0 0 chr15 55447438 55447719 -30248035 - AluSx SINE Alu -31 281 1 3513 148 11 56 chr15 55447719 55447932 -30247822 - L1MA10 LINE L1 -533 5801 5494 813 207 10 10 chr15 55447933 55448126 -30247628 + L1MB8 LINE L1 5985 6177 -1 497 232 50 0 chr15 55448236 55448335 -30247419 - L2 LINE L2 0 3313 3210 546 281 26 42 chr15 55448335 55448527 -30247227 - L2 LINE L2 -210 3103 2915 1698 174 53 0 chr15 55448527 55448809 -30246945 - AluJo SINE Alu -15 297 1 1836 132 88 0 chr15 55448814 55449087 -30246667 - AluSx SINE Alu -15 297 1 1853 131 88 0 chr15 55449129 55449403 -30246351 + AluSx SINE Alu 1 298 -14 708 150 43 14 chr15 55449406 55449546 -30246208 - Cheshire DNA MER1_type -1759 661 518 287 241 36 0 chr15 55449589 55449672 -30246082 + LTR16A LTR ERVL 301 386 -64 427 282 70 0 chr15 55449907 55450063 -30245691 + HERV16 LTR ERVL 234 400 -4596 1484 304 11 5 chr15 55450091 55450532 -30245222 + HERV16 LTR ERVL 2349 2792 -2204 310 298 10 0 chr15 55450530 55450634 -30245120 + HERV16 LTR ERVL 3219 3323 -2331 * 3017 337 49 28 chr15 55450662 55452477 -30243277 + HERV16 LTR ERVL 2847 4699 -1065 367 245 29 0 chr15 55452529 55452631 -30243123 + HERV16 LTR ERVL 4882 4986 -778 306 252 43 17 chr15 55452830 55452945 -30242809 + HERV16 LTR ERVL 4789 4906 -90 2055 147 0 28 chr15 55453116 55453435 -30242319 - AluSx SINE Alu -2 310 1 2268 115 0 10 chr15 55453496 55453809 -30241945 + AluSx SINE Alu 1 310 -2 1840 141 57 3 chr15 55454586 55454869 -30240885 + AluJo SINE Alu 1 298 -14 192 200 0 20 chr15 55454907 55454957 -30240797 - L2 LINE L2 -338 2976 2928 1091 255 97 33 chr15 55454971 55455578 -30240176 - L2 LINE L2 -85 3228 2493 459 278 8 133 chr15 55455698 55455794 -30239960 - L2 LINE L2 -2 3270 3164 2501 46 0 16 chr15 55455794 55456100 -30239654 + AluY SINE Alu 1 301 -10 459 278 8 133 chr15 55456100 55456251 -30239503 - L2 LINE L2 -108 3164 3054 216 97 0 0 chr15 55457632 55457663 -30238091 + (T)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr15 55457753 55457780 -30237974 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1756 133 0 63 chr15 55457782 55458083 -30237671 - AluSx SINE Alu -30 282 1 2437 39 0 7 chr15 55458554 55458865 -30236889 - AluY SINE Alu 0 309 1 3604 204 85 9 chr15 55458989 55460011 -30235743 - L1MC4 LINE L1 0 8042 6943 240 55 110 164 chr15 55460199 55460248 -30235506 + L1MB2 LINE L1 6075 6120 -51 1856 163 10 0 chr15 55460248 55460542 -30235212 + AluJb SINE Alu 1 297 -15 240 55 110 164 chr15 55460542 55460565 -30235189 + L1MB2 LINE L1 6120 6143 -28 2466 94 3 0 chr15 55461468 55461776 -30233978 + AluSg SINE Alu 1 309 -1 652 158 50 33 chr15 55462020 55462140 -30233614 + FLAM_A SINE Alu 1 122 -11 417 305 52 19 chr15 55462178 55462391 -30233363 - L2 LINE L2 -1357 1957 1738 428 323 40 0 chr15 55462668 55462792 -30232962 - L2 LINE L2 -5 3267 3139 2373 85 10 0 chr15 55462963 55463269 -30232485 - AluY SINE Alu -2 309 1 1321 199 8 25 chr15 55463352 55463588 -30232166 - AluJo SINE Alu -12 300 69 5375 130 43 5 chr15 55463590 55464702 -30231052 - L1PA15 LINE L1 -20 6145 5005 2243 115 0 10 chr15 55464703 55465008 -30230746 - AluSx SINE Alu -9 303 2 183 42 0 0 chr15 55465016 55465040 -30230714 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 763 182 0 0 chr15 55465057 55465178 -30230576 + FLAM_A SINE Alu 6 126 -16 5098 146 69 32 chr15 55465179 55466289 -30229465 - L1MC1 LINE L1 0 6333 5185 1913 134 18 0 chr15 55466298 55466603 -30229151 - AluSx SINE Alu 0 310 1 199 316 76 13 chr15 55466638 55466717 -30229037 - L2 LINE L2 -21 3251 3168 885 164 178 44 chr15 55466857 55467082 -30228672 - MIR SINE MIR -5 257 3 641 317 117 45 chr15 55467082 55467875 -30227879 - L2 LINE L2 -225 3047 2201 182 358 0 25 chr15 55467910 55467991 -30227763 - L2 LINE L2 -1321 1993 1915 573 326 70 58 chr15 55468037 55468452 -30227302 - L2 LINE L2 -1559 1755 1330 1814 188 3 0 chr15 55468452 55468750 -30227004 + AluJo SINE Alu 4 302 -10 573 326 70 58 chr15 55468750 55468904 -30226850 - L2 LINE L2 -1984 1330 1179 630 225 136 31 chr15 55469339 55469530 -30226224 + MIR SINE MIR 12 222 -40 2193 125 3 3 chr15 55469689 55469986 -30225768 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 55470191 55470212 -30225542 + AT_rich Low_complexity Low_complexity 1 21 0 229 96 39 19 chr15 55470625 55470677 -30225077 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 189 354 24 39 chr15 55470858 55470985 -30224769 + L2 LINE L2 1086 1210 -2104 2301 80 6 26 chr15 55471785 55472098 -30223656 + AluY SINE Alu 1 307 -4 24 32 0 0 chr15 55472151 55472182 -30223572 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chr15 55472906 55472933 -30222821 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1935 164 3 0 chr15 55473183 55473470 -30222284 + AluSx SINE Alu 1 288 -24 2157 108 7 0 chr15 55474879 55475174 -30220580 - AluSq SINE Alu -16 297 1 2405 58 6 10 chr15 55476249 55476561 -30219193 - AluY SINE Alu 0 311 1 1868 114 0 11 chr15 55476564 55476826 -30218928 - AluSx SINE Alu -10 302 44 1523 223 0 0 chr15 55476827 55477096 -30218658 - AluJo SINE Alu -43 269 1 1727 148 43 46 chr15 55477392 55477696 -30218058 + AluJb SINE Alu 1 303 -9 251 286 40 40 chr15 55477763 55477938 -30217816 - L1MC/D LINE L1 -2060 5748 5574 1793 159 0 47 chr15 55478800 55479121 -30216633 + AluJo SINE Alu 5 310 -2 2034 126 23 23 chr15 55479290 55479600 -30216154 - AluSx SINE Alu -2 310 1 1752 181 3 16 chr15 55480562 55480865 -30214889 + AluJb SINE Alu 1 299 -13 242 260 151 0 chr15 55482054 55482127 -30213627 - MIR SINE MIR -83 125 42 24 32 0 0 chr15 55482439 55482470 -30213284 + AT_rich Low_complexity Low_complexity 1 31 0 2196 108 0 19 chr15 55483074 55483239 -30212515 - AluSp SINE Alu -5 308 141 2128 104 0 4 chr15 55483239 55483517 -30212237 + AluSq SINE Alu 2 278 -35 207 0 0 0 chr15 55483524 55483547 -30212207 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2196 108 0 19 chr15 55483547 55483687 -30212067 - AluSp SINE Alu -178 135 1 357 319 43 0 chr15 55483702 55483818 -30211936 - L2 LINE L2 0 3272 3152 385 341 23 0 chr15 55483849 55483978 -30211776 - L2 LINE L2 0 3313 3182 1792 199 0 0 chr15 55484538 55484840 -30210914 + AluJb SINE Alu 1 302 -10 727 216 0 8 chr15 55485075 55485200 -30210554 + FLAM_A SINE Alu 1 124 -9 272 279 0 0 chr15 55485471 55485532 -30210222 - L2 LINE L2 -1 3312 3252 1337 190 151 65 chr15 55485532 55485829 -30209925 - MLT1D LTR MaLR -2 503 150 2116 148 0 0 chr15 55485829 55486132 -30209622 + AluSx SINE Alu 4 306 -6 1337 190 151 65 chr15 55486132 55486297 -30209457 - MLT1D LTR MaLR -355 150 1 1798 109 0 4 chr15 55486362 55486601 -30209153 + AluSx SINE Alu 60 297 -15 1070 101 0 0 chr15 55486725 55486863 -30208891 + AluSq/x SINE Alu 1 138 -174 1636 149 20 0 chr15 55486864 55487112 -30208642 + AluSx SINE Alu 50 302 -10 5387 241 99 87 chr15 55487112 55487967 -30207787 - L2 LINE L2 -284 3029 2186 1126 166 0 0 chr15 55487967 55488142 -30207612 + FAM SINE Alu 1 175 0 5387 241 99 87 chr15 55488142 55488456 -30207298 - L2 LINE L2 -1127 2186 1877 2000 163 0 3 chr15 55488456 55488757 -30206997 + AluJb SINE Alu 1 300 -12 251 232 105 21 chr15 55488761 55488856 -30206898 + L1ME3A LINE L1 6061 6163 -7 5387 241 99 87 chr15 55488856 55489933 -30205821 - L2 LINE L2 -1438 1875 655 9862 156 114 39 chr15 55489934 55490233 -30205521 + L1MCa LINE L1 22 297 -6310 2104 119 0 0 chr15 55490233 55490511 -30205243 + AluSx SINE Alu 1 278 -34 9862 156 114 39 chr15 55490511 55492650 -30203104 + L1MCa LINE L1 297 2680 -3927 648 301 98 0 chr15 55492749 55493015 -30202739 - L2 LINE L2 -3014 300 9 2070 105 7 20 chr15 55494428 55494760 -30200994 - AluSg1 SINE Alu 0 309 1 467 265 96 4 chr15 55494773 55495003 -30200751 - L1M4 LINE L1 -797 5349 5099 213 39 0 0 chr15 55495203 55495229 -30200525 + (TA)n Simple_repeat Simple_repeat 2 27 0 945 210 0 0 chr15 55495229 55495391 -30200363 - FAM SINE Alu -13 162 1 2241 110 7 3 chr15 55495515 55495824 -30199930 + AluY SINE Alu 1 310 -1 234 0 0 0 chr15 55496094 55496120 -30199634 + (TG)n Simple_repeat Simple_repeat 2 27 0 183 239 0 0 chr15 55496125 55496171 -30199583 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1347 222 158 17 chr15 55496269 55496845 -30198909 - L1MC4 LINE L1 -144 7898 7242 892 232 16 42 chr15 55496845 55497151 -30198603 - AluSx SINE Alu 0 302 5 1773 88 4 12 chr15 55497275 55497524 -30198230 - AluY SINE Alu -64 247 1 2014 140 0 10 chr15 55497532 55497824 -30197930 - AluJo SINE Alu -23 289 1 49 18 0 0 chr15 55498067 55498123 -30197631 + AT_rich Low_complexity Low_complexity 1 56 0 819 234 0 13 chr15 55498123 55498277 -30197477 - FRAM SINE Alu -14 152 1 22 0 0 0 chr15 55499239 55499261 -30196493 + AT_rich Low_complexity Low_complexity 1 22 0 2170 95 36 0 chr15 55499461 55499797 -30195957 + L1MA9 LINE L1 5960 6307 -5 476 281 49 30 chr15 55499808 55499972 -30195782 + MIR SINE MIR 67 233 -29 22 0 0 0 chr15 55500627 55500649 -30195105 + AT_rich Low_complexity Low_complexity 1 22 0 585 253 60 30 chr15 55501372 55501538 -30194216 - MIR SINE MIR -44 218 48 478 286 22 95 chr15 55501577 55501690 -30194064 - L1M4 LINE L1 -3043 3103 3014 2242 98 0 0 chr15 55501690 55501976 -30193778 + AluSx SINE Alu 1 286 -26 478 286 22 95 chr15 55501976 55502093 -30193661 - L1M4 LINE L1 -3132 3014 2890 383 224 0 14 chr15 55502588 55502676 -30193078 + MER33 DNA MER1_type 1 77 -88 438 95 48 12 chr15 55502676 55502760 -30192994 + MER33 DNA MER1_type 214 300 -24 706 269 29 17 chr15 55503571 55503746 -30192008 - MER91B DNA MER1_type -13 177 1 663 282 11 6 chr15 55503869 55504050 -30191704 - MIR SINE MIR -80 182 1 2369 99 0 0 chr15 55505415 55505717 -30190037 + AluSg SINE Alu 1 302 -8 238 300 0 50 chr15 55506200 55506280 -30189474 + MER5B DNA MER1_type 2 77 -101 * 260 309 0 0 chr15 55506275 55506343 -30189411 - MIR SINE MIR -58 150 83 270 81 0 0 chr15 55507022 55507059 -30188695 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr15 55507189 55507210 -30188544 + AT_rich Low_complexity Low_complexity 1 21 0 341 217 72 0 chr15 55507328 55507411 -30188343 + MIR SINE MIR 159 247 -15 23 33 0 0 chr15 55507595 55507625 -30188129 + AT_rich Low_complexity Low_complexity 1 30 0 318 333 113 14 chr15 55507906 55508047 -30187707 + MIR3 SINE MIR 42 196 -12 1484 108 13 13 chr15 55508294 55508526 -30187228 + AluJb SINE Alu 1 232 -80 2434 58 0 3 chr15 55508526 55508817 -30186937 + AluY SINE Alu 8 299 -12 29 0 0 0 chr15 55511893 55511922 -30183832 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr15 55512200 55512224 -30183530 + (CTG)n Simple_repeat Simple_repeat 3 26 0 204 167 0 0 chr15 55512225 55512273 -30183481 + CT-rich Low_complexity Low_complexity 3 50 0 2138 112 22 22 chr15 55513073 55513385 -30182369 - AluSx SINE Alu 0 312 1 1752 181 3 16 chr15 55514347 55514650 -30181104 + AluJb SINE Alu 1 299 -13 242 260 151 0 chr15 55515839 55515912 -30179842 - MIR SINE MIR -83 125 42 24 32 0 0 chr15 55516224 55516255 -30179499 + AT_rich Low_complexity Low_complexity 1 31 0 2196 108 0 19 chr15 55516859 55517024 -30178730 - AluSp SINE Alu -5 308 141 2128 104 0 4 chr15 55517024 55517302 -30178452 + AluSq SINE Alu 2 278 -35 207 0 0 0 chr15 55517309 55517332 -30178422 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2196 108 0 19 chr15 55517332 55517472 -30178282 - AluSp SINE Alu -178 135 1 357 319 43 0 chr15 55517487 55517603 -30178151 - L2 LINE L2 0 3272 3152 385 341 23 0 chr15 55517634 55517763 -30177991 - L2 LINE L2 0 3313 3182 1792 199 0 0 chr15 55518323 55518625 -30177129 + AluJb SINE Alu 1 302 -10 727 216 0 8 chr15 55518860 55518985 -30176769 + FLAM_A SINE Alu 1 124 -9 657 274 68 24 chr15 55519314 55519606 -30176148 - MLT1C LTR MaLR -2 465 161 1360 138 0 0 chr15 55519610 55519799 -30175955 + AluSx SINE Alu 4 192 -120 921 105 0 0 chr15 55519899 55520032 -30175722 + AluSx SINE Alu 168 300 -12 192 358 16 65 chr15 55520171 55520294 -30175460 - MIR SINE MIR -71 137 21 404 302 38 19 chr15 55520540 55520646 -30175108 + MIR3 SINE MIR 14 121 -87 244 196 0 0 chr15 55520678 55520724 -30175030 + L1MB4 LINE L1 6054 6099 -81 2038 152 0 0 chr15 55520747 55521043 -30174711 + AluSx SINE Alu 1 296 -16 1923 164 3 0 chr15 55522454 55522741 -30173013 - AluSx SINE Alu -24 288 1 222 37 0 0 chr15 55522991 55523018 -30172736 + (CAA)n Simple_repeat Simple_repeat 1 27 0 24 32 0 0 chr15 55523742 55523773 -30171981 + AT_rich Low_complexity Low_complexity 1 31 0 2243 80 6 26 chr15 55523826 55524139 -30171615 - AluY SINE Alu -4 307 1 182 361 60 12 chr15 55525079 55525162 -30170592 + L2 LINE L2 3184 3270 -43 229 96 39 19 chr15 55525248 55525300 -30170454 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 21 0 0 0 chr15 55525713 55525734 -30170020 + AT_rich Low_complexity Low_complexity 1 21 0 2161 125 3 3 chr15 55525939 55526236 -30169518 - AluSx SINE Alu -15 297 1 610 225 136 31 chr15 55526395 55526586 -30169168 - MIR SINE MIR -40 222 12 509 311 75 65 chr15 55527057 55527175 -30168579 + L2 LINE L2 1217 1332 -1982 1774 188 3 0 chr15 55527175 55527473 -30168281 - AluJo SINE Alu -10 302 4 509 311 75 65 chr15 55527473 55527888 -30167866 + L2 LINE L2 1332 1755 -1559 180 355 0 0 chr15 55527953 55528015 -30167739 + L2 LINE L2 1932 1993 -1321 630 319 117 46 chr15 55528050 55528843 -30166911 + L2 LINE L2 2201 3047 -225 880 164 178 44 chr15 55528843 55529068 -30166686 + MIR SINE MIR 3 257 -5 203 316 76 13 chr15 55529208 55529287 -30166467 + L2 LINE L2 3168 3251 -21 1884 134 18 0 chr15 55529322 55529627 -30166127 + AluSx SINE Alu 1 310 0 4996 146 68 31 chr15 55529635 55530746 -30165008 + L1MC1 LINE L1 5184 6333 0 742 182 0 0 chr15 55530747 55530868 -30164886 - FLAM_A SINE Alu -16 126 6 183 42 0 0 chr15 55530885 55530909 -30164845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2194 115 0 10 chr15 55530917 55531222 -30164532 + AluSx SINE Alu 2 303 -9 4830 125 66 16 chr15 55531223 55532325 -30163429 + L1PB4 LINE L1 5005 6148 -8 1322 203 53 53 chr15 55532617 55532991 -30162763 - MLT1A2 LTR MaLR 0 374 1 286 285 145 47 chr15 55533147 55533319 -30162435 + MIR SINE MIR 33 221 -41 312 267 12 12 chr15 55534585 55534671 -30161083 - MIR SINE MIR -67 141 56 27 0 0 0 chr15 55535241 55535268 -30160486 + AT_rich Low_complexity Low_complexity 1 27 0 481 277 18 0 chr15 55535552 55535664 -30160090 - L2 LINE L2 -5 3267 3154 2347 88 3 0 chr15 55536208 55536503 -30159251 - AluSq SINE Alu -17 296 1 2272 108 0 0 chr15 55536646 55536941 -30158813 - AluSg SINE Alu -15 295 1 359 308 0 92 chr15 55537384 55537514 -30158240 + L2 LINE L2 3153 3270 -2 308 335 100 0 chr15 55538994 55539214 -30156540 + L2 LINE L2 2699 2938 -334 715 209 0 27 chr15 55539226 55539374 -30156380 + L2 LINE L2 3170 3313 0 275 319 106 0 chr15 55539397 55539510 -30156244 + L2 LINE L2 3147 3271 -1 240 250 320 19 chr15 55539944 55540100 -30155654 + MIR3 SINE MIR 2 204 -4 342 45 0 0 chr15 55540309 55540353 -30155401 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr15 55540662 55540690 -30155064 + AT_rich Low_complexity Low_complexity 1 28 0 444 248 117 7 chr15 55541334 55541471 -30154283 - MIR3 SINE MIR -19 189 38 3027 248 40 72 chr15 55542122 55543439 -30152315 - L2 LINE L2 -102 3211 1932 695 287 94 65 chr15 55543422 55543899 -30151855 + L3 LINE CR1 775 1265 -312 * 1052 165 0 0 chr15 55543977 55544135 -30151619 + FRAM SINE Alu 1 158 -18 292 331 95 12 chr15 55544135 55544304 -30151450 + L3 LINE CR1 1381 1563 -14 2348 85 0 7 chr15 55544346 55544639 -30151115 + AluSc SINE Alu 1 291 -18 2406 106 0 0 chr15 55544886 55545198 -30150556 + AluSx SINE Alu 1 312 0 1690 160 53 0 chr15 55545199 55545481 -30150273 + AluJo SINE Alu 1 297 -15 582 247 0 45 chr15 55545481 55545635 -30150119 + L2 LINE L2 2915 3061 -252 465 242 50 0 chr15 55545673 55545772 -30149982 + L2 LINE L2 3210 3313 0 664 233 10 10 chr15 55545882 55546075 -30149679 - L1MB8 LINE L1 -1 6177 5985 3105 153 11 81 chr15 55546076 55546289 -30149465 + L1MB7 LINE L1 5494 5720 -464 2119 123 0 0 chr15 55546289 55546573 -30149181 + AluSx SINE Alu 1 284 -28 3105 153 11 81 chr15 55546573 55547073 -30148681 + L1MB7 LINE L1 5720 6157 -27 520 300 17 0 chr15 55548099 55548279 -30147475 + AluJb SINE Alu 1 183 -129 345 146 0 0 chr15 55548557 55548612 -30147142 - L1PB3 LINE L1 -189 5965 5911 1091 168 158 10 chr15 55548617 55548921 -30146833 - L1MDa LINE L1 -5271 1269 921 448 314 63 22 chr15 55549070 55549299 -30146455 - L1MDa LINE L1 -5580 960 497 536 320 151 0 chr15 55549422 55549647 -30146107 - MIR SINE MIR 0 262 4 1687 161 0 0 chr15 55550188 55550474 -30145280 + MER47A DNA MER2_type 1 286 -80 * 2474 183 72 25 chr15 55550472 55551031 -30144723 + MER21B LTR ERV1 230 814 -49 331 286 234 45 chr15 55551139 55551900 -30143854 - L2 LINE L2 -5 3267 2331 270 360 33 7 chr15 55552140 55552293 -30143461 - L2 LINE L2 -1400 1914 1758 527 303 36 6 chr15 55552848 55553013 -30142741 + MIR3 SINE MIR 36 205 -3 859 210 107 15 chr15 55553312 55553517 -30142237 - MER58A DNA MER1_type 0 224 1 286 143 0 0 chr15 55553892 55553941 -30141813 - L1MC4 LINE L1 -62 7980 7932 2021 129 3 3 chr15 55553967 55554253 -30141501 - AluSx SINE Alu -26 286 1 234 55 110 164 chr15 55555155 55555178 -30140576 - L1MB2 LINE L1 -28 6143 6120 1813 163 10 0 chr15 55555178 55555472 -30140282 - AluJb SINE Alu -15 297 1 234 55 110 164 chr15 55555472 55555521 -30140233 - L1MB2 LINE L1 -51 6120 6075 2187 189 98 2 chr15 55555709 55556249 -30139505 + L1MC4 LINE L1 6943 7534 -508 282 73 0 0 chr15 55556632 55556673 -30139081 + (T)n Simple_repeat Simple_repeat 1 41 0 38 39 0 0 chr15 55557292 55557344 -30138410 + AT_rich Low_complexity Low_complexity 1 52 0 4072 104 58 2 chr15 55557344 55557987 -30137767 - L1PA16 LINE L1 -9 6157 5479 261 331 95 4 chr15 55558157 55558399 -30137355 - HAL1 LINE L1 -854 1653 1390 367 287 45 117 chr15 55558401 55558802 -30136952 - HAL1 LINE L1 -1190 1317 946 2042 113 0 34 chr15 55558808 55559128 -30136626 - AluSq SINE Alu -4 309 1 1755 179 3 10 chr15 55559906 55560213 -30135541 + AluJo SINE Alu 1 305 -7 238 300 231 0 chr15 55561011 55561141 -30134613 - MIR3 SINE MIR -3 205 46 210 191 0 0 chr15 55561370 55561412 -30134342 + (CCCTA)n Simple_repeat Simple_repeat 2 43 0 261 341 220 0 chr15 55562641 55562814 -30132940 - L2 LINE L2 -23 3249 3039 212 0 36 0 chr15 55563147 55563175 -30132579 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1889 112 0 15 chr15 55563177 55563444 -30132310 - AluSx SINE Alu -20 292 30 397 246 179 0 chr15 55563456 55563590 -30132164 + LTR16C LTR ERVL 332 489 -2 433 318 99 43 chr15 55563767 55564141 -30131613 - L2 LINE L2 -583 2731 2337 275 0 29 0 chr15 55564167 55564202 -30131552 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chr15 55564318 55564346 -30131408 + AT_rich Low_complexity Low_complexity 1 28 0 40 49 0 0 chr15 55564380 55564441 -30131313 + AT_rich Low_complexity Low_complexity 1 61 0 2369 104 0 0 chr15 55565284 55565593 -30130161 - AluSg SINE Alu -1 309 1 234 250 71 0 chr15 55565595 55565679 -30130075 - L1ME LINE L1 -294 5827 5738 317 219 82 74 chr15 55565715 55565971 -30129783 - L1ME4a LINE L1 -21 6100 5843 1639 145 4 4 chr15 55566025 55566267 -30129487 - AluJo SINE Alu -22 290 49 22 0 0 0 chr15 55566270 55566292 -30129462 + AT_rich Low_complexity Low_complexity 1 22 0 324 233 13 28 chr15 55566378 55566536 -30129218 - L1ME4a LINE L1 -298 5823 5666 1880 142 0 0 chr15 55566742 55567009 -30128745 - AluSx SINE Alu -45 267 1 661 258 39 11 chr15 55567014 55567293 -30128461 - L1MEc LINE L1 -2847 3368 3082 195 100 0 0 chr15 55567295 55567325 -30128429 + (T)n Simple_repeat Simple_repeat 1 30 0 351 302 10 0 chr15 55567345 55567441 -30128313 - L1MEc LINE L1 -3114 3101 3005 1226 196 106 34 chr15 55567446 55567767 -30127987 - MER2 DNA MER2_type 0 345 2 1912 270 65 8 chr15 55567772 55568908 -30126846 - L1MEc LINE L1 -3235 2980 1809 30 0 0 0 chr15 55568948 55568978 -30126776 + AT_rich Low_complexity Low_complexity 1 30 0 472 296 169 12 chr15 55569068 55569565 -30126189 - HAL1 LINE L1 -1932 575 1 22 35 0 0 chr15 55569896 55569925 -30125829 + AT_rich Low_complexity Low_complexity 1 29 0 7444 38 0 0 chr15 55570233 55571163 -30124591 - L1PA3 LINE L1 0 6155 5226 3134 32 0 2 chr15 55571163 55571565 -30124189 + L1PA3 LINE L1 4848 5248 -898 326 261 65 0 chr15 55572469 55572561 -30123193 - MER103 DNA DNA -67 99 2 1998 157 0 3 chr15 55573044 55573338 -30122416 + AluSx SINE Alu 1 293 -19 800 118 0 0 chr15 55573607 55573741 -30122013 - AluSg/x SINE Alu 0 303 170 841 263 44 15 chr15 55574686 55575024 -30120730 - L1ME3 LINE L1 0 6162 5815 2270 261 65 36 chr15 55575125 55576318 -30119436 + L1PA13 LINE L1 1 1655 -5132 * 3344 210 3 1 chr15 55576312 55577042 -30118712 + L1 LINE L1 3935 4665 -1481 332 395 24 45 chr15 55577062 55577353 -30118401 - L1MEc LINE L1 -6014 382 98 2238 100 0 3 chr15 55577853 55578144 -30117610 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr15 55578177 55578206 -30117548 + AT_rich Low_complexity Low_complexity 1 29 0 265 173 39 0 chr15 55579792 55579844 -30115910 - L1 LINE L1 -1211 4935 4882 2303 114 25 112 chr15 55579847 55580268 -30115486 - MSTB1 LTR MaLR 0 432 55 2170 109 0 0 chr15 55580268 55580552 -30115202 - AluSc SINE Alu -25 284 1 2303 114 25 112 chr15 55580552 55580603 -30115151 - MSTB1 LTR MaLR -377 55 1 2608 233 35 10 chr15 55580604 55581376 -30114378 - L1 LINE L1 -1347 4799 4009 263 259 0 0 chr15 55581378 55581432 -30114322 - MER2 DNA MER2_type 0 345 292 573 158 0 0 chr15 55581475 55581557 -30114197 - MER2 DNA MER2_type -262 83 2 673 218 6 0 chr15 55581559 55581729 -30114025 - L1 LINE L1 -2139 4007 3837 5021 158 46 23 chr15 55582195 55582290 -30113464 - L1PA16 LINE L1 -9 6157 6066 276 30 0 0 chr15 55582290 55582323 -30113431 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1966 96 0 33 chr15 55582323 55582595 -30113159 - AluSx SINE Alu -28 284 22 5021 158 46 23 chr15 55582595 55584368 -30111386 - L1PA16 LINE L1 -99 6067 4247 511 311 54 25 chr15 55584579 55584820 -30110934 + MIR SINE MIR 7 254 -8 23 0 0 0 chr15 55584910 55584933 -30110821 + AT_rich Low_complexity Low_complexity 1 23 0 282 73 0 0 chr15 55585266 55585307 -30110447 + (T)n Simple_repeat Simple_repeat 1 41 0 1670 261 112 17 chr15 55586430 55587448 -30108306 - HAL1b LINE L1 -3 1345 214 1565 195 7 7 chr15 55587607 55587889 -30107865 - AluJo SINE Alu -30 282 1 2884 197 28 0 chr15 55588020 55588536 -30107218 + Tigger7 DNA MER2_type 1 531 -1956 1433 165 17 0 chr15 55588536 55588771 -30106983 + MER2 DNA MER2_type 2 240 -105 2249 150 25 47 chr15 55588771 55589218 -30106536 + Tigger1 DNA MER2_type 1 437 -1981 681 79 0 40 chr15 55589219 55589320 -30106434 - AluY SINE Alu -17 294 198 660 131 9 0 chr15 55589322 55589429 -30106325 + Tigger1 DNA MER2_type 426 533 -1885 941 207 67 10 chr15 55589429 55589637 -30106117 + AluJo SINE Alu 87 306 -6 11815 133 17 8 chr15 55589637 55590897 -30104857 + Tigger1 DNA MER2_type 524 1808 -610 998 98 4 183 chr15 55590897 55591132 -30104622 - 7SK RNA RNA 0 193 1 11815 133 17 8 chr15 55591132 55591749 -30104005 + Tigger1 DNA MER2_type 1808 2418 0 592 200 57 0 chr15 55591749 55591849 -30103905 + MER2 DNA MER2_type 239 344 -1 437 206 0 0 chr15 55591854 55591927 -30103827 + Tigger7 DNA MER2_type 2415 2487 0 2126 119 16 16 chr15 55592048 55592358 -30103396 - AluSx SINE Alu -2 310 1 1492 164 7 93 chr15 55592400 55592710 -30103044 - AluJo SINE Alu -29 283 1 1915 111 14 18 chr15 55592897 55593177 -30102577 - AluSg1 SINE Alu -30 279 1 1993 118 0 17 chr15 55593994 55594307 -30101447 - AluSx SINE Alu 0 308 1 183 268 0 0 chr15 55594550 55594591 -30101163 - L2 LINE L2 0 3272 3232 8026 42 33 1 chr15 55594592 55595568 -30100186 - LTR13 LTR ERVK 0 1007 1 268 257 21 11 chr15 55597662 55597804 -30097950 - MIR SINE MIR -14 248 58 671 306 60 8 chr15 55597988 55598223 -30097531 - MIR SINE MIR -15 247 1 2069 85 0 52 chr15 55598394 55598441 -30097313 - MLT2A1 LTR ERVL 0 444 396 420 111 0 0 chr15 55598441 55598504 -30097250 + (TG)n Simple_repeat Simple_repeat 2 64 0 2069 85 0 52 chr15 55598504 55598762 -30096992 - MLT2A1 LTR ERVL -48 396 155 664 219 0 0 chr15 55599264 55599383 -30096371 - FLAM_A SINE Alu -11 122 4 1096 285 86 37 chr15 55599686 55600685 -30095069 - L1P5 LINE L1 -633 5523 4471 4174 173 59 64 chr15 55600741 55601618 -30094136 - L1MB3 LINE L1 -2 6181 5301 279 0 0 0 chr15 55601618 55601649 -30094105 + (TA)n Simple_repeat Simple_repeat 1 31 0 4174 173 59 64 chr15 55601649 55602359 -30093395 - L1MB3 LINE L1 -882 5301 4561 327 130 0 19 chr15 55602359 55602413 -30093341 - LTR43 LTR ERV1 -145 457 405 4174 173 59 64 chr15 55602413 55602578 -30093176 - L1MB3 LINE L1 -1622 4561 4397 759 81 0 0 chr15 55602695 55602794 -30092960 + L1PA4 LINE L1 1 99 -6047 * 34600 39 3 2 chr15 55602775 55607847 -30087907 + L1PA4 LINE L1 1081 6155 0 3966 217 35 19 chr15 55608103 55609089 -30086665 - L1MA9 LINE L1 -46 7287 6287 1075 184 0 0 chr15 55609103 55609288 -30086466 - AluSx SINE Alu 0 310 126 559 114 0 0 chr15 55609288 55609367 -30086387 - AluSx SINE Alu -233 79 1 401 218 82 0 chr15 55609368 55609478 -30086276 - L1MA9 LINE L1 -867 6300 6182 * 2519 206 47 5 chr15 55609476 55610092 -30085662 - L1MA9 LINE L1 -3136 4031 3390 * 5300 239 60 36 chr15 55610070 55612792 -30082962 - L1MA9 LINE L1 -4147 3020 565 491 225 18 53 chr15 55612781 55612950 -30082804 - L1M4 LINE L1 -2200 3946 3784 * 5298 137 23 45 chr15 55613150 55613371 -30082383 + L1PA15 LINE L1 5119 5343 -822 1758 188 3 0 chr15 55613371 55613663 -30082091 - AluJo SINE Alu -19 293 1 5298 137 23 45 chr15 55613663 55614499 -30081255 + L1PA15 LINE L1 5343 6160 -5 269 237 0 0 chr15 55614546 55614605 -30081149 + L1P4 LINE L1 5675 5733 -433 2382 216 83 117 chr15 55614630 55615280 -30080474 + L1ME2 LINE L1 3935 4605 -1541 6472 90 8 2 chr15 55615280 55616426 -30079328 + L1PA10 LINE L1 5006 6149 -19 194 0 0 37 chr15 55616429 55616456 -30079298 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 2382 216 83 117 chr15 55616456 55617193 -30078561 + L1ME2 LINE L1 4607 5279 -867 2357 217 133 29 chr15 55617224 55617961 -30077793 + L1ME2 LINE L1 5342 6155 -9 1490 262 154 31 chr15 55618116 55618807 -30076947 - L2 LINE L2 -268 3045 2078 24 0 0 0 chr15 55619890 55619914 -30075840 + AT_rich Low_complexity Low_complexity 1 24 0 2951 248 166 94 chr15 55620501 55621628 -30074126 + L2 LINE L2 1003 2048 -1265 886 83 0 0 chr15 55621628 55621749 -30074005 + AluSp/q SINE Alu 193 313 0 2951 248 166 94 chr15 55621749 55621783 -30073971 + L2 LINE L2 2048 2078 -1235 1596 164 10 34 chr15 55621783 55622075 -30073679 + AluSq SINE Alu 19 303 -10 2951 248 166 94 chr15 55622075 55622920 -30072834 + L2 LINE L2 2078 3312 -1 578 256 11 125 chr15 55622943 55623224 -30072530 - MIR SINE MIR -2 260 12 209 81 0 27 chr15 55623301 55623338 -30072416 + (CAA)n Simple_repeat Simple_repeat 2 37 0 378 269 21 104 chr15 55623610 55623803 -30071951 - MIR SINE MIR -7 255 79 31 0 0 0 chr15 55624271 55624302 -30071452 + AT_rich Low_complexity Low_complexity 1 31 0 451 316 46 36 chr15 55624439 55624768 -30070986 - L1ME4a LINE L1 -277 5844 5513 1436 185 35 4 chr15 55625158 55625418 -30070336 + AluJb SINE Alu 6 273 -39 2343 75 0 3 chr15 55625586 55625879 -30069875 + AluY SINE Alu 5 296 -15 295 56 0 0 chr15 55626905 55626941 -30068813 + U2 snRNA snRNA 1 36 -152 627 285 106 38 chr15 55626953 55627433 -30068321 + HAL1b LINE L1 259 771 -577 1535 231 100 65 chr15 55627701 55628047 -30067707 + L1MC5 LINE L1 6649 6981 -980 342 0 0 0 chr15 55628047 55628085 -30067669 + (CA)n Simple_repeat Simple_repeat 2 39 0 1535 231 100 65 chr15 55628085 55628487 -30067267 + L1MC5 LINE L1 6981 7379 -582 288 286 80 9 chr15 55628502 55628614 -30067140 + MLT1J LTR MaLR 48 167 -344 253 228 150 84 chr15 55628701 55628868 -30066886 + MLT1J LTR MaLR 301 478 -33 399 271 41 24 chr15 55629086 55629256 -30066498 + L1MC5 LINE L1 7737 7909 -52 2340 88 0 0 chr15 55629925 55630219 -30065535 - AluSx SINE Alu -18 294 1 399 274 174 14 chr15 55630609 55630927 -30064827 + L1ME1 LINE L1 5622 6002 -119 34 55 0 0 chr15 55630964 55631019 -30064735 + AT_rich Low_complexity Low_complexity 1 55 0 359 324 148 6 chr15 55631442 55631618 -30064136 + MIR3 SINE MIR 4 204 -4 21 0 0 0 chr15 55632149 55632170 -30063584 + AT_rich Low_complexity Low_complexity 1 21 0 223 301 0 14 chr15 55632756 55632829 -30062925 + GA-rich Low_complexity Low_complexity 1 72 0 223 270 78 52 chr15 55633302 55633417 -30062337 + L2 LINE L2 3154 3271 -1 569 244 35 0 chr15 55634318 55634490 -30061264 + L1MEc LINE L1 2332 2509 -3887 408 88 0 0 chr15 55634491 55634548 -30061206 + (TAA)n Simple_repeat Simple_repeat 3 59 0 2129 171 38 9 chr15 55634586 55635006 -30060748 + MSTB1 LTR MaLR 1 432 0 375 221 59 29 chr15 55635131 55635267 -30060487 + L1ME1 LINE L1 6018 6157 -9 4882 238 38 32 chr15 55635544 55637908 -30057846 + L1PA13 LINE L1 1 2529 -4268 557 223 8 15 chr15 55637908 55638038 -30057716 + FLAM_C SINE Alu 2 130 -3 4882 238 38 32 chr15 55638038 55638458 -30057296 + L1PA13 LINE L1 2529 2945 -3852 681 171 0 0 chr15 55638462 55638585 -30057169 + L1MA3 LINE L1 6183 6305 0 441 304 112 15 chr15 55638602 55639220 -30056534 + L1MEc LINE L1 3277 3954 -2261 432 309 83 22 chr15 55639236 55639598 -30056156 + L1MEc LINE L1 4037 4420 -1795 275 223 157 8 chr15 55639714 55639835 -30055919 + L1MEc LINE L1 4618 4756 -1459 1212 298 59 22 chr15 55640004 55640933 -30054821 + L1MEc LINE L1 5049 6016 -223 6754 68 22 0 chr15 55641533 55642922 -30052832 - L1PA7 LINE L1 -4 6150 4747 2429 79 0 0 chr15 55642933 55643237 -30052517 - AluY SINE Alu -7 304 1 315 326 123 14 chr15 55643406 55643682 -30052072 + L1M4 LINE L1 3210 3515 -2631 3333 214 86 48 chr15 55643696 55644758 -30050996 + L1MC3 LINE L1 6667 7768 -17 306 315 75 67 chr15 55644768 55645022 -30050732 + L1M4 LINE L1 3510 3765 -2381 230 270 11 22 chr15 55645094 55645183 -30050571 + L1M4 LINE L1 4097 4184 -1962 30 27 0 0 chr15 55645320 55645357 -30050397 + AT_rich Low_complexity Low_complexity 1 37 0 225 252 94 39 chr15 55645493 55645620 -30050134 + L1M4 LINE L1 4570 4703 -1443 328 311 102 30 chr15 55645638 55645805 -30049949 + L1MEc LINE L1 1523 1701 -4695 442 266 99 57 chr15 55646335 55646496 -30049258 + L1MEc LINE L1 2977 3157 -3058 2105 154 0 0 chr15 55646496 55646808 -30048946 + AluSx SINE Alu 1 312 0 442 266 99 57 chr15 55646808 55646928 -30048826 + L1MEc LINE L1 3157 3270 -2945 399 236 75 19 chr15 55647042 55647203 -30048551 - L1M4 LINE L1 -3535 2611 2442 3492 153 40 38 chr15 55647387 55648078 -30047676 + L1MB3 LINE L1 5454 6146 -37 2353 166 18 9 chr15 55648073 55648518 -30047236 - L1 LINE L1 -1385 4761 4313 * 351 186 0 110 chr15 55648507 55648625 -30047129 + L1MA9 LINE L1 6203 6307 -5 * 307 94 38 0 chr15 55648625 55648678 -30047076 + L1MB2 LINE L1 6115 6169 -2 2150 129 0 3 chr15 55649403 55649714 -30046040 + AluSx SINE Alu 1 310 -2 6513 220 31 52 chr15 55650227 55651550 -30044204 + L1PA15 LINE L1 1250 2599 -4198 2072 98 41 20 chr15 55651550 55651845 -30043909 - AluSx SINE Alu -11 301 1 6513 220 31 52 chr15 55651845 55653515 -30042239 + L1PA15 LINE L1 2599 4168 -2629 5334 195 31 66 chr15 55653517 55654143 -30041611 + L1PA15 LINE L1 4786 5432 -1384 2194 116 111 13 chr15 55654143 55654531 -30041223 + MSTA LTR MaLR 1 426 -2 5334 195 31 66 chr15 55654531 55655647 -30040107 + L1PA15 LINE L1 5432 6479 -337 2101 124 18 49 chr15 55655647 55655809 -30039945 + THE1C LTR MaLR 1 166 -209 2043 105 0 67 chr15 55655809 55656124 -30039630 - AluSx SINE Alu -18 294 1 2101 124 18 49 chr15 55656124 55656348 -30039406 + THE1C LTR MaLR 166 375 0 5334 195 31 66 chr15 55656348 55656671 -30039083 + L1PA15 LINE L1 6479 6812 -4 258 105 0 0 chr15 55656679 55656717 -30039037 + (TG)n Simple_repeat Simple_repeat 1 38 0 537 235 34 27 chr15 55656856 55657005 -30038749 + MLT1A1 LTR MaLR 1 150 -215 289 403 7 7 chr15 55657024 55657168 -30038586 - MIR SINE MIR -118 144 1 390 237 61 18 chr15 55657195 55657309 -30038445 - MIR SINE MIR -62 200 82 26 50 0 0 chr15 55658026 55658066 -30037688 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr15 55658243 55658265 -30037489 + AT_rich Low_complexity Low_complexity 1 22 0 546 139 0 0 chr15 55658485 55658571 -30037183 - AluSp/q SINE Alu -20 293 208 26 0 0 0 chr15 55658596 55658622 -30037132 + AT_rich Low_complexity Low_complexity 1 26 0 2085 113 3 16 chr15 55658630 55658939 -30036815 + AluSq SINE Alu 1 305 -8 695 251 127 16 chr15 55658956 55659807 -30035947 + L1ME3A LINE L1 5016 5966 -204 11375 154 10 17 chr15 55660111 55662340 -30033414 + L1P4 LINE L1 3310 5536 -627 403 254 8 16 chr15 55662340 55662462 -30033292 - L1ME2 LINE L1 -56 6108 5988 2042 259 115 75 chr15 55663594 55664959 -30030795 - L1ME3A LINE L1 -3 6561 5252 315 0 0 0 chr15 55664959 55664994 -30030760 + (TA)n Simple_repeat Simple_repeat 1 35 0 2042 259 115 75 chr15 55664994 55665149 -30030605 - L1ME3A LINE L1 -1312 5252 5105 1715 122 0 4 chr15 55665149 55665395 -30030359 - AluSx SINE Alu -37 275 31 2042 259 115 75 chr15 55665395 55666271 -30029483 - L1ME3A LINE L1 -1459 5105 4079 551 301 66 7 chr15 55666273 55666575 -30029179 - L1MEd LINE L1 -4840 1700 1381 25 31 0 0 chr15 55666642 55666674 -30029080 + AT_rich Low_complexity Low_complexity 1 32 0 339 399 40 32 chr15 55666715 55666963 -30028791 - L1MEd LINE L1 -5364 1166 917 436 333 55 27 chr15 55667519 55667702 -30028052 - L1MEd LINE L1 -5466 1064 877 21 0 0 0 chr15 55669083 55669104 -30026650 + AT_rich Low_complexity Low_complexity 1 21 0 994 204 5 27 chr15 55669394 55669580 -30026174 + MER5A DNA MER1_type 1 182 -7 279 0 0 0 chr15 55669658 55669689 -30026065 + (TC)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr15 55669688 55669714 -30026040 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 22 0 0 0 chr15 55670104 55670126 -30025628 + AT_rich Low_complexity Low_complexity 1 22 0 190 246 0 35 chr15 55671181 55671238 -30024516 + L2 LINE L2 1180 1234 -2080 512 310 92 88 chr15 55671647 55672302 -30023452 + L2 LINE L2 856 1512 -1802 203 318 33 46 chr15 55672352 55672503 -30023251 + L2 LINE L2 2888 3036 -236 270 311 56 0 chr15 55672589 55672679 -30023075 + MER3 DNA MER1_type 1 95 -114 258 319 53 9 chr15 55672689 55672802 -30022952 + L2 LINE L2 3193 3310 -3 1511 194 18 11 chr15 55672858 55673142 -30022612 + AluJo SINE Alu 11 296 -16 231 235 94 24 chr15 55673164 55673249 -30022505 - MIR SINE MIR -50 212 122 13951 141 30 8 chr15 55673249 55673933 -30021821 + L1MA3 LINE L1 17 684 -6881 1853 184 0 3 chr15 55673933 55674243 -30021511 + AluJb SINE Alu 2 310 -2 13951 141 30 8 chr15 55674243 55675789 -30019965 + L1MA3 LINE L1 684 2297 -5268 2139 78 0 0 chr15 55675789 55676058 -30019696 + AluY SINE Alu 37 305 -6 11116 162 24 23 chr15 55676058 55677243 -30018511 + L1MA3 LINE L1 3173 4355 -3369 626 239 0 0 chr15 55677243 55677373 -30018381 + FLAM_C SINE Alu 3 132 -1 11116 162 24 23 chr15 55677373 55678359 -30017395 + L1MA3 LINE L1 4355 5339 -2385 1923 139 7 3 chr15 55678359 55678654 -30017100 - AluSx SINE Alu -16 296 1 11116 162 24 23 chr15 55678654 55679839 -30015915 + L1MA3 LINE L1 5339 6521 -1203 2255 121 0 0 chr15 55679839 55680137 -30015617 + AluSg SINE Alu 1 298 -12 11116 162 24 23 chr15 55680137 55681330 -30014424 + L1MA3 LINE L1 6521 7722 -2 278 417 0 0 chr15 55681337 55681452 -30014302 - MIR SINE MIR -128 134 20 831 159 0 8 chr15 55681489 55681621 -30014133 - FLAM_C SINE Alu -2 131 1 499 290 64 27 chr15 55681805 55682043 -30013711 + MIR SINE MIR 15 262 0 22 0 0 0 chr15 55682088 55682110 -30013644 + AT_rich Low_complexity Low_complexity 1 22 0 634 281 10 15 chr15 55683180 55683379 -30012375 - L1MC4 LINE L1 -1192 6850 6653 296 192 55 14 chr15 55683404 55683477 -30012277 + MER2 DNA MER2_type 1 76 -269 6328 189 25 17 chr15 55683503 55684680 -30011074 - L1PBa LINE L1 -2427 4435 3178 2551 71 0 3 chr15 55684680 55684990 -30010764 - AluY SINE Alu -2 309 1 6328 189 25 17 chr15 55684990 55685536 -30010218 - L1PBa LINE L1 -3684 3178 2638 2319 155 113 7 chr15 55685545 55686985 -30008769 - L1PBa LINE L1 -5120 1743 2 411 238 98 8 chr15 55687257 55687279 -30008475 - MER45A DNA AcHobo -1403 178 159 3888 141 23 9 chr15 55687279 55687962 -30007792 + L1PB4 LINE L1 5464 6156 0 411 238 98 8 chr15 55687962 55688061 -30007693 - MER45A DNA AcHobo -1422 159 46 1125 166 0 11 chr15 55688243 55688418 -30007336 - AluJb SINE Alu -25 287 115 1623 192 0 10 chr15 55688545 55688836 -30006918 + AluJb SINE Alu 1 288 -24 192 77 0 0 chr15 55688840 55688866 -30006888 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 255 191 56 0 chr15 55688871 55688960 -30006794 + (TA)n Simple_repeat Simple_repeat 1 94 0 21 0 0 0 chr15 55688977 55688998 -30006756 + AT_rich Low_complexity Low_complexity 1 21 0 430 229 9 114 chr15 55689080 55689290 -30006464 + MER58A DNA MER1_type 27 214 -10 29282 99 11 21 chr15 55689290 55695719 -30000035 + L1PA7 LINE L1 2 6469 0 2212 221 77 59 chr15 55695806 55696689 -29999065 + L1ME2 LINE L1 5256 6154 -10 444 37 0 0 chr15 55697145 55697199 -29998555 + (TG)n Simple_repeat Simple_repeat 2 55 0 183 80 0 0 chr15 55697198 55697223 -29998531 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 * 2252 103 0 0 chr15 55697223 55697514 -29998240 - AluSq SINE Alu -18 295 5 290 234 21 0 chr15 55697922 55698016 -29997738 - L1M4 LINE L1 -2192 3954 3859 * 2668 151 55 29 chr15 55698009 55698074 -29997680 - L1MCa LINE L1 -4107 2319 2257 2088 171 6 0 chr15 55698074 55698420 -29997334 + MER7A DNA MER2_type 1 346 0 2668 151 55 29 chr15 55698420 55698618 -29997136 - L1MCa LINE L1 -4169 2257 2066 1332 214 4 0 chr15 55698618 55698856 -29996898 + MER8 DNA MER2_type 1 239 0 2668 151 55 29 chr15 55698856 55699697 -29996057 - L1MCa LINE L1 -4360 2066 1021 23 0 0 0 chr15 55699778 55699801 -29995953 + AT_rich Low_complexity Low_complexity 1 23 0 42273 38 5 1 chr15 55699806 55705939 -29989815 - L1PA4 LINE L1 -3 6152 3 1448 206 14 14 chr15 55705973 55706250 -29989504 + AluJo SINE Alu 1 277 -35 2432 206 23 14 chr15 55706281 55706843 -29988911 - L1MCa LINE L1 -5414 1012 446 4016 198 43 3 chr15 55707085 55708087 -29987667 + L1MB3 LINE L1 4013 5054 -1092 10780 154 40 7 chr15 55708088 55708984 -29986770 + L1PA13 LINE L1 3378 4243 -1920 189 0 0 0 chr15 55708984 55709005 -29986749 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1632 189 14 10 chr15 55709007 55709304 -29986450 - AluJb SINE Alu -14 298 1 10780 154 40 7 chr15 55709304 55711177 -29984577 + L1PA13 LINE L1 4243 6162 -1 1212 258 128 33 chr15 55711203 55711956 -29983798 + L1 LINE L1 2746 3569 -2577 1502 158 19 11 chr15 55711956 55712222 -29983532 + AluJb SINE Alu 24 291 -21 477 34 0 0 chr15 55712243 55712302 -29983452 + (CA)n Simple_repeat Simple_repeat 2 60 0 2186 120 0 3 chr15 55712307 55712608 -29983146 + AluSg SINE Alu 1 300 -10 3865 174 27 16 chr15 55712609 55713421 -29982333 + L1MB3 LINE L1 5362 6182 -1 357 277 204 13 chr15 55713827 55714062 -29981692 - L1M4 LINE L1 -872 5274 4995 855 251 78 48 chr15 55714163 55714666 -29981088 - MLT1H LTR MaLR 0 549 14 2158 133 0 3 chr15 55714745 55715054 -29980700 + AluSx SINE Alu 1 308 -4 307 285 127 27 chr15 55715126 55715347 -29980407 - L1M4 LINE L1 -1426 4720 4478 21 57 0 0 chr15 55715439 55715474 -29980280 + AT_rich Low_complexity Low_complexity 1 35 0 2000 157 0 0 chr15 55715627 55715913 -29979841 - AluSx SINE Alu -26 286 1 1245 178 129 23 chr15 55715916 55716303 -29979451 - L1ME2 LINE L1 -197 5967 5540 1171 42 0 0 chr15 55716357 55716500 -29979254 - L1PA3 LINE L1 0 6155 6013 1759 157 11 7 chr15 55716564 55716851 -29978903 + AluSx SINE Alu 1 288 -24 358 235 346 0 chr15 55716973 55717109 -29978645 + MIR SINE MIR 80 262 0 1969 92 25 0 chr15 55717507 55717788 -29977966 + L1PA10 LINE L1 5878 6165 -3 765 249 90 0 chr15 55718202 55718403 -29977351 - MER20 DNA MER1_type 0 219 1 25 65 0 0 chr15 55719357 55719403 -29976351 + AT_rich Low_complexity Low_complexity 1 46 0 840 224 56 0 chr15 55719582 55719778 -29975976 + MSTB LTR MaLR 1 207 -219 3455 202 14 4 chr15 55719779 55720565 -29975189 - L1P LINE L1 -749 5397 4604 3168 185 26 15 chr15 55720560 55721285 -29974469 + L1P LINE L1 3875 4607 -1539 * 377 237 0 11 chr15 55721281 55721374 -29974380 - L1M2 LINE L1 -4686 2163 2072 * 6245 227 49 16 chr15 55721367 55722664 -29973090 - L1M2 LINE L1 -5354 1495 144 1454 109 36 5 chr15 55722664 55722884 -29972870 + MER30 DNA MER1_type 4 230 0 6245 227 49 16 chr15 55722884 55723032 -29972722 - L1M2 LINE L1 -6705 144 2 2206 127 0 0 chr15 55723203 55723503 -29972251 + AluSx SINE Alu 1 300 -12 21958 160 19 24 chr15 55724129 55728958 -29966796 - L1PA10 LINE L1 -75 6408 1554 2065 132 0 13 chr15 55728958 55729261 -29966493 - AluY SINE Alu -12 299 1 21958 160 19 24 chr15 55729261 55729537 -29966217 - L1PA10 LINE L1 -4929 1554 1278 2279 97 0 19 chr15 55729537 55729847 -29965907 - AluSx SINE Alu -8 304 1 21958 160 19 24 chr15 55729847 55731206 -29964548 - L1PA10 LINE L1 -5205 1278 1 3418 243 30 18 chr15 55731206 55731609 -29964145 - L1M4 LINE L1 -1488 5156 4760 201 94 0 0 chr15 55731609 55731641 -29964113 + (TG)n Simple_repeat Simple_repeat 2 33 0 3418 243 30 18 chr15 55731641 55731663 -29964091 - L1M4 LINE L1 -1884 4760 4740 3197 148 52 32 chr15 55731663 55732256 -29963498 - MER6A DNA MER2_type 0 605 1 3418 243 30 18 chr15 55732256 55732850 -29962904 - L1M4 LINE L1 -1904 4740 4123 939 244 4 29 chr15 55732847 55733093 -29962661 - L1M4 LINE L1 -4668 1978 1739 * 1425 281 69 43 chr15 55733090 55733667 -29962087 - L1M4 LINE L1 -5946 596 5 615 237 81 20 chr15 55733760 55733852 -29961902 - L1MB8 LINE L1 -6 6172 6087 207 0 0 0 chr15 55733852 55733875 -29961879 + (CCA)n Simple_repeat Simple_repeat 2 24 0 615 237 81 20 chr15 55733875 55733980 -29961774 - L1MB8 LINE L1 -91 6087 5963 1534 186 22 116 chr15 55733989 55734198 -29961556 - L1MB8 LINE L1 -488 5686 5459 1342 159 76 54 chr15 55734198 55734474 -29961280 + AluJo SINE Alu 1 282 -30 1534 186 22 116 chr15 55734474 55734511 -29961243 - L1MB8 LINE L1 -715 5459 5420 528 16 0 0 chr15 55734511 55734572 -29961182 + (TG)n Simple_repeat Simple_repeat 2 62 0 1534 186 22 116 chr15 55734572 55734945 -29960809 - L1MB8 LINE L1 -754 5420 5113 782 282 88 27 chr15 55735088 55735464 -29960290 - L1MB8 LINE L1 -1944 4202 3804 676 216 144 6 chr15 55735618 55735785 -29959969 - MIR SINE MIR -44 218 29 12953 31 3 2 chr15 55735949 55737485 -29958269 + HERVK11D LTR ERVK 6216 7752 0 7346 38 28 0 chr15 55737485 55738358 -29957396 + MER11D LTR ERVK 1 897 0 340 327 88 13 chr15 55738680 55738839 -29956915 + MIR SINE MIR 22 192 -70 246 266 31 94 chr15 55740141 55740168 -29955586 + MIR3 SINE MIR 83 110 -98 2252 116 0 0 chr15 55740168 55740471 -29955283 + AluSx SINE Alu 1 303 -9 246 266 31 94 chr15 55740471 55740571 -29955183 + MIR3 SINE MIR 110 202 -6 302 299 46 69 chr15 55740584 55740758 -29954996 - MER5A DNA MER1_type -18 171 2 1712 172 81 3 chr15 55740923 55741307 -29954447 + Charlie1b DNA MER1_type 109 522 -1 1861 168 6 3 chr15 55741706 55742022 -29953732 - MER2 DNA MER2_type -1 344 28 203 256 0 0 chr15 55742248 55742287 -29953467 + L2 LINE L2 3214 3252 -20 517 209 44 20 chr15 55742868 55743001 -29952753 + MER2 DNA MER2_type 15 153 -86 260 310 51 44 chr15 55743884 55744042 -29951712 - L2 LINE L2 -72 3241 3083 929 277 112 48 chr15 55744067 55745345 -29950409 + L1MEc LINE L1 37 1358 -4857 946 202 16 26 chr15 55745355 55745374 -29950380 + AluJb SINE Alu 84 102 -210 2428 193 25 73 chr15 55745374 55746017 -29949737 + LTR9 LTR ERV1 1 612 0 946 202 16 26 chr15 55746017 55746190 -29949564 + AluJb SINE Alu 102 274 -38 44 63 0 0 chr15 55746299 55746378 -29949376 + AT_rich Low_complexity Low_complexity 1 79 0 1226 253 119 12 chr15 55746446 55746991 -29948763 + L1MEc LINE L1 1478 2122 -4274 2238 250 44 98 chr15 55747042 55748900 -29946854 + L1MEc LINE L1 2311 4066 -2149 813 138 0 36 chr15 55748900 55749038 -29946716 + AluSq/x SINE Alu 1 133 -179 585 211 0 0 chr15 55749042 55749170 -29946584 + (TA)n Simple_repeat Simple_repeat 2 129 0 1699 128 0 34 chr15 55749170 55749279 -29946475 + AluSx SINE Alu 33 144 -168 417 39 0 0 chr15 55749279 55749330 -29946424 + (CA)n Simple_repeat Simple_repeat 2 52 0 1699 128 0 34 chr15 55749330 55749485 -29946269 + AluSx SINE Alu 144 288 -24 5559 195 29 9 chr15 55749498 55750918 -29944836 + L1P4 LINE L1 3993 5448 -718 2186 49 0 22 chr15 55750918 55751185 -29944569 + AluY SINE Alu 30 290 -21 5559 195 29 9 chr15 55751185 55751433 -29944321 + L1P4 LINE L1 5448 5689 -477 13928 232 26 24 chr15 55751599 55756110 -29939644 + L1PA13 LINE L1 1537 6071 -750 1943 238 74 18 chr15 55756105 55757547 -29938207 + L1M4 LINE L1 3391 4981 -1165 * 444 172 62 31 chr15 55757553 55757681 -29938073 + L1 LINE L1 3418 3549 -2597 2272 98 0 13 chr15 55757784 55758089 -29937665 - AluSc SINE Alu -8 301 1 4725 222 90 69 chr15 55758112 55758971 -29936783 + L1ME LINE L1 3383 4222 -1944 304 222 0 0 chr15 55758971 55759025 -29936729 + Tigger5 DNA MER2_type 1 54 -2269 * 378 233 0 0 chr15 55758995 55759068 -29936686 + Tigger5 DNA MER2_type 2251 2323 0 * 4725 222 90 69 chr15 55759068 55760269 -29935485 + L1ME LINE L1 4265 5578 -588 11999 29 0 0 chr15 55760266 55761776 -29933978 - L1PA3 LINE L1 -675 5480 3971 5850 21 0 0 chr15 55761776 55762445 -29933309 + L1PA3 LINE L1 5483 6152 -3 302 243 14 0 chr15 55762468 55762542 -29933212 + L1ME LINE L1 5572 5646 -518 24 32 0 0 chr15 55762918 55762949 -29932805 + AT_rich Low_complexity Low_complexity 1 31 0 2468 82 0 0 chr15 55764230 55764534 -29931220 + AluSx SINE Alu 3 306 -6 423 0 0 0 chr15 55764891 55764926 -29930828 + (CA)n Simple_repeat Simple_repeat 1 82 0 423 0 0 0 chr15 55764926 55764973 -29930781 + (CA)n Simple_repeat Simple_repeat 2 48 0 2476 74 3 0 chr15 55766643 55766953 -29928801 + AluY SINE Alu 1 311 0 362 327 107 7 chr15 55767241 55767391 -29928363 + MIR3 SINE MIR 37 201 -7 654 193 42 0 chr15 55767619 55767738 -29928016 + FLAM_A SINE Alu 1 124 -9 482 203 50 2 chr15 55767761 55767871 -29927883 + MIR SINE MIR 32 148 -62 11621 25 4 1 chr15 55767991 55770131 -29925623 + L1PA3 LINE L1 4014 6155 0 237 286 36 0 chr15 55770157 55770241 -29925513 + L1ME4a LINE L1 5479 5565 -601 2408 66 7 3 chr15 55770943 55771246 -29924508 - AluY SINE Alu -7 304 1 430 264 41 41 chr15 55771260 55771457 -29924297 + L1ME4a LINE L1 5627 5823 -298 22 0 0 0 chr15 55771543 55771565 -29924189 + AT_rich Low_complexity Low_complexity 1 22 0 1622 145 4 4 chr15 55771568 55771810 -29923944 + AluJo SINE Alu 49 290 -22 377 219 82 74 chr15 55771864 55772120 -29923634 + L1ME4a LINE L1 5843 6100 -21 255 250 71 0 chr15 55772156 55772240 -29923514 + L1ME LINE L1 5738 5827 -294 2270 108 0 0 chr15 55772242 55772539 -29923215 + AluSg1 SINE Alu 1 297 -12 29 60 0 0 chr15 55772595 55772645 -29923109 + AT_rich Low_complexity Low_complexity 1 50 0 400 266 164 0 chr15 55773507 55773635 -29922119 - MIR3 SINE MIR -10 198 50 2168 109 0 0 chr15 55773642 55773925 -29921829 + AluSq SINE Alu 1 283 -30 292 71 36 0 chr15 55773932 55773988 -29921766 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 27 0 0 0 chr15 55774412 55774439 -29921315 + AT_rich Low_complexity Low_complexity 1 27 0 690 319 38 13 chr15 55774881 55775119 -29920635 - LTR67 LTR ERVL -199 358 115 3858 193 46 16 chr15 55775164 55776231 -29919523 + L1MB8 LINE L1 5064 6160 -18 1102 250 87 79 chr15 55776275 55776807 -29918947 - L1MC5 LINE L1 -728 7233 6698 865 321 60 44 chr15 55776904 55777499 -29918255 + L1MEc LINE L1 39 643 -5753 25 0 0 0 chr15 55777664 55777689 -29918065 + AT_rich Low_complexity Low_complexity 1 25 0 649 152 0 0 chr15 55777792 55777891 -29917863 - AluJ/FLAM SINE Alu -213 99 1 261 57 0 0 chr15 55778028 55778063 -29917691 + (TC)n Simple_repeat Simple_repeat 2 36 0 356 304 11 11 chr15 55778186 55778278 -29917476 + L2 LINE L2 3181 3272 0 715 290 81 46 chr15 55778293 55778752 -29917002 - L1ME LINE L1 -358 5804 5330 251 185 12 25 chr15 55778983 55779064 -29916690 - L1ME LINE L1 -1099 5047 4968 533 270 113 24 chr15 55779258 55779507 -29916247 - L1ME LINE L1 -1443 4703 4423 3414 115 20 0 chr15 55779507 55780011 -29915743 - MER75 DNA T2_type 0 514 1 533 270 113 24 chr15 55780011 55780054 -29915700 - L1ME LINE L1 -1723 4423 4385 * 4120 32 0 0 chr15 55780049 55780577 -29915177 + L1PA4 LINE L1 4843 5370 -776 4573 50 19 2 chr15 55780578 55781162 -29914592 + L1PA4 LINE L1 5561 6154 -1 1669 199 31 0 chr15 55781172 55781514 -29914240 + L1 LINE L1 4947 5304 -842 225 0 0 0 chr15 55781514 55781539 -29914215 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1669 199 31 0 chr15 55781539 55781588 -29914166 + L1 LINE L1 5304 5350 -796 6279 90 20 0 chr15 55781605 55782599 -29913155 - L1PA10 LINE L1 -12 6156 5151 2126 98 41 20 chr15 55782702 55782997 -29912757 + AluSx SINE Alu 1 301 -11 7263 233 51 66 chr15 55782997 55785471 -29910283 - L1PA13 LINE L1 -4309 2488 1 1718 190 17 0 chr15 55785484 55785779 -29909975 - AluJo SINE Alu -12 300 1 5381 129 21 8 chr15 55785931 55786878 -29908876 - L1MA6 LINE L1 0 6300 5342 3365 75 2 0 chr15 55786879 55787335 -29908419 + L1PA6 LINE L1 5446 5902 -252 430 244 81 81 chr15 55787467 55787725 -29908029 - L1ME4a LINE L1 -21 6100 5843 1639 145 4 4 chr15 55787779 55788021 -29907733 - AluJo SINE Alu -22 290 49 22 0 0 0 chr15 55788024 55788046 -29907708 + AT_rich Low_complexity Low_complexity 1 22 0 376 264 41 41 chr15 55788132 55788329 -29907425 - L1ME4a LINE L1 -298 5823 5627 2418 72 7 0 chr15 55788343 55788647 -29907107 + AluY SINE Alu 1 306 -5 392 191 24 32 chr15 55788990 55789116 -29906638 + MER75 DNA T2_type 390 514 0 241 286 79 5 chr15 55789176 55789365 -29906389 + L1ME LINE L1 4501 4703 -1443 231 185 12 25 chr15 55789559 55789640 -29906114 + L1ME LINE L1 4968 5047 -1099 611 293 90 24 chr15 55789871 55790281 -29905473 + L1ME LINE L1 5330 5766 -396 351 304 11 11 chr15 55790345 55790437 -29905317 - L2 LINE L2 0 3272 3181 210 91 0 0 chr15 55790560 55790593 -29905161 + (GA)n Simple_repeat Simple_repeat 2 34 0 385 245 0 10 chr15 55790734 55790832 -29904922 + AluJ/FLAM SINE Alu 2 98 -204 22 0 0 0 chr15 55791338 55791360 -29904394 + AT_rich Low_complexity Low_complexity 1 22 0 352 232 24 12 chr15 55792188 55792270 -29903484 - MIR3 SINE MIR -21 187 105 400 386 114 15 chr15 55792525 55792997 -29902757 - L2 LINE L2 -557 2757 2239 317 345 124 14 chr15 55793012 55793221 -29902533 - MIR SINE MIR -1 261 30 937 139 59 18 chr15 55793487 55793696 -29902058 - MLT2A2 LTR ERVL -8 445 292 2220 252 6 0 chr15 55843757 55844226 -29851528 - L1PA13 LINE L1 -6315 472 1 430 209 30 13 chr15 55844505 55844644 -29851110 - L1MA10 LINE L1 -9 6281 6018 1746 223 36 9 chr15 55844769 55845190 -29850564 - MSTB1 LTR MaLR 0 432 1 189 175 0 0 chr15 55845230 55845270 -29850484 + (TTA)n Simple_repeat Simple_repeat 3 42 0 417 309 7 0 chr15 55845271 55845420 -29850334 - L1MEc LINE L1 -3878 2518 2369 354 107 36 0 chr15 55845578 55845634 -29850120 + L1M4 LINE L1 1151 1208 -5334 2030 167 0 0 chr15 55845642 55845954 -29849800 + AluSx SINE Alu 1 312 0 2375 207 79 23 chr15 55845958 55846616 -29849138 + L1M4 LINE L1 1464 2158 -4488 1694 128 89 0 chr15 55846852 55847110 -29848644 - AluSx SINE Alu -13 299 19 1442 279 54 3 chr15 55847165 55847555 -29848199 + MER70A LTR ERVL 23 432 -40 705 158 6 63 chr15 55848770 55848818 -29846936 - AluSq SINE Alu -132 181 132 435 38 0 0 chr15 55848818 55848871 -29846883 + (TG)n Simple_repeat Simple_repeat 2 54 0 705 158 6 63 chr15 55848871 55848980 -29846774 - AluSq SINE Alu -181 132 33 372 248 0 0 chr15 55848980 55849097 -29846657 + (TA)n Simple_repeat Simple_repeat 2 118 0 813 138 0 36 chr15 55849116 55849254 -29846500 - AluSq/x SINE Alu -180 133 1 2201 251 44 98 chr15 55849254 55851111 -29844643 - L1MEc LINE L1 -2149 4066 2311 333 209 87 26 chr15 55851169 55851284 -29844470 - L1MEc LINE L1 -4282 2114 1993 14974 46 5 2 chr15 55851393 55853295 -29842459 + L1P LINE L1 1745 3652 -2494 1216 158 89 3 chr15 55853395 55853686 -29842068 + Charlie1 DNA MER1_type 2445 2760 -1 1861 168 6 3 chr15 55854085 55854401 -29841353 - MER2 DNA MER2_type -1 344 28 203 256 0 0 chr15 55854627 55854666 -29841088 + L2 LINE L2 3214 3252 -20 461 242 40 18 chr15 55855247 55855381 -29840373 + MER2 DNA MER2_type 15 153 -86 260 310 51 44 chr15 55856032 55856190 -29839564 - L2 LINE L2 -72 3241 3083 929 277 112 48 chr15 55856215 55857493 -29838261 + L1MEc LINE L1 37 1358 -4857 946 202 16 26 chr15 55857503 55857522 -29838232 + AluJb SINE Alu 84 102 -210 2428 193 25 73 chr15 55857522 55858165 -29837589 + LTR9 LTR ERV1 1 612 0 946 202 16 26 chr15 55858165 55858338 -29837416 + AluJb SINE Alu 102 274 -38 44 63 0 0 chr15 55858447 55858526 -29837228 + AT_rich Low_complexity Low_complexity 1 79 0 755 264 147 1 chr15 55858594 55858956 -29836798 + L1MEc LINE L1 1478 1933 -4463 2808 224 3 1 chr15 55859056 55859709 -29836045 - L1 LINE L1 -1558 4588 3935 2468 263 78 38 chr15 55859703 55860896 -29834858 - L1PA13 LINE L1 -5132 1655 1 * 229 294 35 24 chr15 55860905 55860990 -29834764 + MER90 LTR ERV1 490 575 0 933 263 44 15 chr15 55860997 55861335 -29834419 + L1ME3 LINE L1 5815 6162 0 807 118 0 0 chr15 55862280 55862414 -29833340 + AluSg/x SINE Alu 172 305 0 860 261 165 46 chr15 55862931 55863453 -29832301 + MLT1G1 LTR MaLR 3 586 -9 524 261 72 14 chr15 55863483 55863690 -29832064 - HAL1 LINE L1 -2285 222 4 4497 176 40 35 chr15 55863766 55864614 -29831140 + MER21B LTR ERV1 1 852 -11 22 0 0 0 chr15 55865994 55866016 -29829738 + AT_rich Low_complexity Low_complexity 1 22 0 2038 137 3 10 chr15 55866313 55866612 -29829142 + AluSx SINE Alu 1 297 -15 232 278 28 14 chr15 55867454 55867526 -29828228 - L2 LINE L2 -4 3268 3196 1556 250 29 10 chr15 55867857 55868241 -29827513 + L1M4 LINE L1 474 864 -5678 1879 146 38 0 chr15 55868968 55869256 -29826498 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr15 55869397 55869420 -29826334 + AT_rich Low_complexity Low_complexity 1 23 0 680 336 72 34 chr15 55870286 55870828 -29824926 + L2 LINE L2 2555 3154 -118 1774 171 48 17 chr15 55870828 55871179 -29824575 - MLT1A1 LTR MaLR -3 362 1 680 336 72 34 chr15 55871179 55871251 -29824503 + L2 LINE L2 3154 3222 -50 639 202 0 0 chr15 55872273 55872377 -29823377 + FLAM_A SINE Alu 16 119 -23 5725 205 48 30 chr15 55872400 55872886 -29822868 - L1MB7 LINE L1 -316 5868 5392 2291 87 0 26 chr15 55872886 55873195 -29822559 - AluY SINE Alu -10 301 1 5725 205 48 30 chr15 55873195 55874824 -29820930 - L1MB7 LINE L1 -792 5392 3704 24 0 0 0 chr15 55874834 55874858 -29820896 + AT_rich Low_complexity Low_complexity 1 24 0 1590 21 0 11 chr15 55874858 55875048 -29820706 - L1PA2 LINE L1 0 6155 5968 273 75 0 0 chr15 55875813 55875853 -29819901 + (A)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr15 55876186 55876209 -29819545 + AT_rich Low_complexity Low_complexity 1 23 0 511 311 54 25 chr15 55876299 55876540 -29819214 - MIR SINE MIR -8 254 7 5021 158 46 23 chr15 55876751 55878524 -29817230 + L1PA16 LINE L1 4247 6066 -100 1967 96 0 33 chr15 55878524 55878829 -29816925 + AluSx SINE Alu 22 317 0 5021 158 46 23 chr15 55878829 55878924 -29816830 + L1PA16 LINE L1 6066 6157 -9 673 218 6 0 chr15 55879390 55879560 -29816194 + L1M4 LINE L1 3837 4007 -2139 573 158 0 0 chr15 55879562 55879644 -29816110 + MER2 DNA MER2_type 2 83 -262 263 259 0 0 chr15 55879687 55879741 -29816013 + MER2 DNA MER2_type 292 345 0 4041 221 76 12 chr15 55879743 55880516 -29815238 + L1M4 LINE L1 4009 4731 -1435 2303 114 25 112 chr15 55880516 55880567 -29815187 + MSTB1 LTR MaLR 1 55 -377 2185 106 0 0 chr15 55880567 55880851 -29814903 + AluSc SINE Alu 1 284 -25 2303 114 25 112 chr15 55880851 55881272 -29814482 + MSTB1 LTR MaLR 55 432 0 443 75 17 12 chr15 55881212 55881279 -29814475 + MSTB1 LTR MaLR 302 432 0 * 4041 221 76 12 chr15 55881279 55881324 -29814430 + L1M4 LINE L1 4738 4778 -1388 2492 65 3 0 chr15 55881324 55881634 -29814120 - AluSp SINE Alu -2 311 1 4041 221 76 12 chr15 55881634 55882123 -29813631 + L1M4 LINE L1 4778 5420 -746 1998 237 75 18 chr15 55882118 55883559 -29812195 + L1ME2 LINE L1 3391 4981 -1165 * 7451 220 43 9 chr15 55883565 55885486 -29810268 + L1MB3 LINE L1 3418 5403 -743 578 183 56 21 chr15 55885594 55885736 -29810018 + L1MB3 LINE L1 6035 6181 -2 1853 247 64 19 chr15 55885772 55886448 -29809306 + L1ME2 LINE L1 5461 6332 -2 679 273 118 21 chr15 55886896 55887134 -29808620 + MIR SINE MIR 2 262 0 386 301 41 69 chr15 55887584 55887795 -29807959 + MIR SINE MIR 18 220 -42 200 351 26 0 chr15 55887841 55887918 -29807836 + L3 LINE CR1 1496 1574 -3 923 263 72 87 chr15 55888407 55888804 -29806950 + MLT1F LTR MaLR 1 402 -140 2139 91 37 3 chr15 55888804 55889102 -29806652 + AluSx SINE Alu 1 308 -4 923 263 72 87 chr15 55889102 55889129 -29806625 + MLT1F LTR MaLR 402 428 -114 1626 194 3 3 chr15 55889129 55889422 -29806332 + AluJo SINE Alu 1 293 -19 923 263 72 87 chr15 55889422 55889539 -29806215 + MLT1F LTR MaLR 428 535 -7 571 283 91 10 chr15 55889584 55889782 -29805972 - MIR SINE MIR -36 226 13 5553 196 52 11 chr15 55890013 55890288 -29805466 - L1MA9 LINE L1 -215 6097 5835 198 0 0 0 chr15 55890288 55890310 -29805444 + (CA)n Simple_repeat Simple_repeat 2 23 0 5553 196 52 11 chr15 55890310 55892007 -29803747 - L1MA9 LINE L1 -477 5835 4045 2212 95 0 14 chr15 55892107 55892403 -29803351 - AluSc SINE Alu -17 292 1 4846 222 90 69 chr15 55892426 55893285 -29802469 + L1ME1 LINE L1 3383 4222 -1944 307 222 0 0 chr15 55893285 55893339 -29802415 + Tigger5 DNA MER2_type 1 54 -2269 * 382 233 0 0 chr15 55893309 55893382 -29802372 + Tigger5 DNA MER2_type 2251 2323 0 * 4846 222 90 69 chr15 55893382 55894583 -29801171 + L1ME1 LINE L1 4265 5578 -588 11980 30 0 0 chr15 55894580 55896090 -29799664 - L1PA3 LINE L1 -675 5480 3971 5843 19 0 0 chr15 55896090 55896759 -29798995 + L1PA3 LINE L1 5483 6152 -3 1057 228 42 40 chr15 55896782 55897272 -29798482 + L1ME1 LINE L1 5572 6120 -46 490 168 152 0 chr15 55897188 55897313 -29798441 + L1MA10 LINE L1 6191 6334 0 * 390 211 0 0 chr15 55897386 55897457 -29798297 + L1ME3A LINE L1 5579 5649 -521 507 33 0 0 chr15 55897490 55897551 -29798203 + (TAG)n Simple_repeat Simple_repeat 1 61 0 490 190 155 0 chr15 55897551 55897693 -29798061 + L1ME3A LINE L1 6001 6164 -6 499 225 18 53 chr15 55897793 55897962 -29797792 + L1M4 LINE L1 3784 3946 -2200 * 5198 238 61 36 chr15 55897951 55900672 -29795082 + L1MA9 LINE L1 565 3020 -4147 2571 207 47 5 chr15 55900648 55901266 -29794488 + L1MA9 LINE L1 3388 4031 -3136 * 412 218 82 0 chr15 55901264 55901374 -29794380 + L1MA9 LINE L1 6182 6300 -867 * 1063 163 0 2 chr15 55901375 55901639 -29794115 + AluSx SINE Alu 1 312 0 3929 206 42 27 chr15 55901653 55902640 -29793114 + L1MA9 LINE L1 6287 7287 -46 14650 26 2 0 chr15 55902896 55905411 -29790343 - L1PA4 LINE L1 0 6155 3638 4862 234 39 35 chr15 55905515 55907360 -29788394 + L1PA13 LINE L1 523 2528 -4269 557 223 8 15 chr15 55907360 55907490 -29788264 + FLAM_C SINE Alu 2 130 -3 4862 234 39 35 chr15 55907490 55907910 -29787844 + L1PA13 LINE L1 2528 2945 -3852 681 171 0 0 chr15 55907914 55908037 -29787717 + L1MA3 LINE L1 6183 6305 0 34 24 0 0 chr15 55908037 55908078 -29787676 + AT_rich Low_complexity Low_complexity 1 41 0 352 291 113 22 chr15 55908095 55908623 -29787131 + L1ME3A LINE L1 3259 3836 -2310 432 309 83 22 chr15 55908682 55909044 -29786710 + L1ME3A LINE L1 3968 4351 -1795 275 223 157 8 chr15 55909160 55909281 -29786473 + L1ME3A LINE L1 4549 4687 -1459 1212 298 59 22 chr15 55909450 55910379 -29785375 + L1ME3A LINE L1 4980 5947 -223 6754 68 22 0 chr15 55910979 55912368 -29783386 - L1PA7 LINE L1 -4 6150 4747 2429 79 0 0 chr15 55912379 55912683 -29783071 - AluY SINE Alu -7 304 1 315 326 123 14 chr15 55912852 55913128 -29782626 + L1M4 LINE L1 3210 3515 -2631 3264 222 80 48 chr15 55913142 55914210 -29781544 + L1MC3 LINE L1 6667 7768 -17 306 315 75 67 chr15 55914220 55914474 -29781280 + L1M4 LINE L1 3510 3765 -2381 230 270 11 22 chr15 55914546 55914635 -29781119 + L1M4 LINE L1 4097 4184 -1962 30 27 0 0 chr15 55914772 55914809 -29780945 + AT_rich Low_complexity Low_complexity 1 37 0 225 252 94 39 chr15 55914945 55915072 -29780682 + L1M4 LINE L1 4570 4703 -1443 328 311 102 30 chr15 55915090 55915257 -29780497 + L1MEc LINE L1 1523 1701 -4695 442 266 99 57 chr15 55915787 55915948 -29779806 + L1MEc LINE L1 2977 3157 -3058 2105 154 0 0 chr15 55915948 55916260 -29779494 + AluSx SINE Alu 1 312 0 442 266 99 57 chr15 55916260 55916380 -29779374 + L1MEc LINE L1 3157 3270 -2945 399 236 75 19 chr15 55916494 55916655 -29779099 - L1MEc LINE L1 -3535 2680 2511 3492 153 40 38 chr15 55916839 55917530 -29778224 + L1MB3 LINE L1 5454 6146 -37 2353 166 18 9 chr15 55917525 55917970 -29777784 - L1 LINE L1 -1385 4761 4313 * 387 179 0 106 chr15 55917959 55918082 -29777672 + L1MA9 LINE L1 6203 6312 0 * 300 127 36 0 chr15 55918077 55918132 -29777622 + L1MB2 LINE L1 6115 6171 0 * 2149 132 0 3 chr15 55918855 55919166 -29776588 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr15 55921243 55921272 -29774482 + AT_rich Low_complexity Low_complexity 1 29 0 2215 96 0 3 chr15 55921305 55921596 -29774158 - AluSx SINE Alu -22 290 1 325 385 27 46 chr15 55922096 55922358 -29773396 + L1MEc LINE L1 98 354 -6042 577 203 29 7 chr15 55922389 55922527 -29773227 - L1P LINE L1 -1461 4685 4545 900 183 23 6 chr15 55922627 55922802 -29772952 - MSTB1 LTR MaLR -254 178 1 354 98 0 0 chr15 55922840 55922891 -29772863 + (TTA)n Simple_repeat Simple_repeat 3 53 0 569 244 35 0 chr15 55922892 55923064 -29772690 - L1MEc LINE L1 -3887 2509 2332 223 270 78 52 chr15 55923966 55924081 -29771673 - L2 LINE L2 -1 3271 3154 223 301 0 14 chr15 55924554 55924627 -29771127 + CT-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr15 55925212 55925233 -29770521 + AT_rich Low_complexity Low_complexity 1 21 0 359 324 148 6 chr15 55925764 55925940 -29769814 - MIR3 SINE MIR -4 204 4 34 55 0 0 chr15 55926363 55926418 -29769336 + AT_rich Low_complexity Low_complexity 1 55 0 399 274 174 14 chr15 55926455 55926773 -29768981 - L1ME4a LINE L1 -119 6002 5622 2340 88 0 0 chr15 55927163 55927457 -29768297 + AluSx SINE Alu 1 294 -18 399 271 41 24 chr15 55928126 55928296 -29767458 - L1MC5 LINE L1 -52 7909 7737 253 228 150 84 chr15 55928514 55928681 -29767073 - MLT1J LTR MaLR -33 478 301 288 286 80 9 chr15 55928768 55928880 -29766874 - MLT1J LTR MaLR -344 167 48 1535 233 99 64 chr15 55928895 55929297 -29766457 - L1MC5 LINE L1 -582 7379 6981 396 0 0 0 chr15 55929297 55929341 -29766413 + (TG)n Simple_repeat Simple_repeat 2 45 0 1535 233 99 64 chr15 55929341 55929697 -29766057 - L1MC5 LINE L1 -980 6981 6639 627 285 106 38 chr15 55929955 55930435 -29765319 - HAL1b LINE L1 -577 771 259 293 56 0 0 chr15 55930447 55930483 -29765271 - U2 snRNA snRNA -152 36 1 2308 75 0 3 chr15 55931509 55931802 -29763952 - AluY SINE Alu -15 296 5 1403 185 35 4 chr15 55931970 55932230 -29763524 - AluJb SINE Alu -39 273 6 483 316 46 36 chr15 55932620 55932949 -29762805 + L1ME4a LINE L1 5513 5844 -277 31 0 0 0 chr15 55933086 55933117 -29762637 + AT_rich Low_complexity Low_complexity 1 31 0 378 269 21 104 chr15 55933585 55933778 -29761976 + MIR SINE MIR 79 255 -7 209 81 0 27 chr15 55934050 55934087 -29761667 + (TTG)n Simple_repeat Simple_repeat 2 37 0 578 256 11 125 chr15 55934164 55934445 -29761309 + MIR SINE MIR 12 260 -2 3099 252 168 84 chr15 55934468 55935313 -29760441 - L2 LINE L2 -1 3312 2539 1845 135 7 37 chr15 55935313 55935610 -29760144 - AluSx SINE Alu -10 302 15 3099 252 168 84 chr15 55935610 55935631 -29760123 - L2 LINE L2 -774 2539 2521 821 91 0 0 chr15 55935631 55935741 -29760013 - AluSp/q SINE Alu -11 302 193 3099 252 168 84 chr15 55935741 55936868 -29758886 - L2 LINE L2 -792 2521 1003 24 0 0 0 chr15 55937455 55937479 -29758275 + AT_rich Low_complexity Low_complexity 1 24 0 1490 261 154 31 chr15 55938562 55939253 -29756501 + L2 LINE L2 2078 3045 -268 2333 219 133 29 chr15 55939408 55940145 -29755609 - L1ME2 LINE L1 -9 6155 5342 1271 263 45 14 chr15 55940176 55940663 -29755091 - L1ME2 LINE L1 -867 5279 4778 475 220 105 16 chr15 55940700 55940891 -29754863 - L1ME2 LINE L1 -1316 4830 4623 194 0 0 37 chr15 55940913 55940940 -29754814 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 3293 89 14 0 chr15 55940943 55941383 -29754371 - L1PA10 LINE L1 -19 6149 5704 2285 102 3 16 chr15 55941483 55941975 -29753779 - L1PA10 LINE L1 -642 5489 5006 1496 227 131 47 chr15 55941968 55942625 -29753129 - L1ME2 LINE L1 -1500 4646 3935 * 269 237 0 0 chr15 55942650 55942709 -29753045 - L1P4 LINE L1 -433 5733 5675 14838 203 24 29 chr15 55942756 55943592 -29752162 - L1PA15 LINE L1 -5 6811 5973 1745 189 3 0 chr15 55943592 55943883 -29751871 + AluJo SINE Alu 1 292 -20 14838 203 24 29 chr15 55943883 55948330 -29747424 - L1PA15 LINE L1 -843 5973 1537 5543 196 29 9 chr15 55948496 55948744 -29747010 - L1P4 LINE L1 -477 5689 5448 2175 52 0 22 chr15 55948744 55949011 -29746743 - AluY SINE Alu -21 290 30 5543 196 29 9 chr15 55949011 55950431 -29745323 - L1P4 LINE L1 -718 5448 3993 337 209 132 11 chr15 55950432 55950444 -29745310 + L1MC4 LINE L1 6602 6611 -1431 1705 129 0 30 chr15 55950444 55950598 -29745156 - AluSx SINE Alu -24 288 144 444 37 0 0 chr15 55950598 55950652 -29745102 + (TG)n Simple_repeat Simple_repeat 2 55 0 1705 129 0 30 chr15 55950652 55950761 -29744993 - AluSx SINE Alu -168 144 33 337 209 132 11 chr15 55950761 55950839 -29744915 + L1MC4 LINE L1 6611 6703 -1339 216 0 0 0 chr15 55950856 55950880 -29744874 + (TA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr15 55951191 55951214 -29744540 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr15 55951561 55951588 -29744166 + (T)n Simple_repeat Simple_repeat 1 27 0 1670 261 112 17 chr15 55952710 55953728 -29742026 - HAL1b LINE L1 -3 1345 214 1565 195 7 7 chr15 55953887 55954169 -29741585 - AluJo SINE Alu -30 282 1 2653 200 30 0 chr15 55954300 55954794 -29740960 + Tigger7 DNA MER2_type 1 509 -1978 1443 156 17 4 chr15 55954816 55955052 -29740702 + MER2 DNA MER2_type 2 240 -105 2236 150 25 47 chr15 55955052 55955499 -29740255 + Tigger1 DNA MER2_type 1 437 -1981 682 88 0 39 chr15 55955500 55955602 -29740152 - AluY SINE Alu -16 295 198 660 131 9 0 chr15 55955604 55955711 -29740043 + Tigger1 DNA MER2_type 426 533 -1885 941 207 67 10 chr15 55955711 55955919 -29739835 + AluJo SINE Alu 87 306 -6 11815 133 17 8 chr15 55955919 55957179 -29738575 + Tigger1 DNA MER2_type 524 1808 -610 998 98 4 183 chr15 55957179 55957414 -29738340 - 7SK RNA RNA 0 193 1 11815 133 17 8 chr15 55957414 55958031 -29737723 + Tigger1 DNA MER2_type 1808 2418 0 592 200 57 0 chr15 55958031 55958131 -29737623 + MER2 DNA MER2_type 239 344 -1 437 206 0 0 chr15 55958136 55958209 -29737545 + Tigger7 DNA MER2_type 2415 2487 0 2132 120 16 13 chr15 55958330 55958639 -29737115 - AluSx SINE Alu -2 310 1 1492 164 7 93 chr15 55958681 55958991 -29736763 - AluJo SINE Alu -29 283 1 1915 111 14 18 chr15 55959178 55959458 -29736296 - AluSg1 SINE Alu -30 279 1 1993 118 0 17 chr15 55960275 55960588 -29735166 - AluSx SINE Alu 0 308 1 183 268 0 0 chr15 55960831 55960872 -29734882 - L2 LINE L2 0 3272 3232 8026 42 33 1 chr15 55960873 55961849 -29733905 - LTR13 LTR ERVK 0 1007 1 268 257 21 11 chr15 55963943 55964085 -29731669 - MIR SINE MIR -14 248 58 671 306 60 8 chr15 55964269 55964504 -29731250 - MIR SINE MIR -15 247 1 2069 85 0 52 chr15 55964675 55964722 -29731032 - MLT2A1 LTR ERVL 0 444 396 459 92 0 0 chr15 55964722 55964787 -29730967 + (TG)n Simple_repeat Simple_repeat 2 66 0 2069 85 0 52 chr15 55964787 55965045 -29730709 - MLT2A1 LTR ERVL -48 396 155 664 219 0 0 chr15 55965547 55965666 -29730088 - FLAM_A SINE Alu -11 122 4 1096 285 86 37 chr15 55965969 55966968 -29728786 - L1P5 LINE L1 -633 5523 4471 4174 172 60 65 chr15 55967024 55967899 -29727855 - L1MB3 LINE L1 -2 6250 5373 441 0 0 0 chr15 55967899 55967948 -29727806 + (TA)n Simple_repeat Simple_repeat 1 49 0 4174 172 60 65 chr15 55967948 55968658 -29727096 - L1MB3 LINE L1 -879 5373 4630 327 130 0 19 chr15 55968658 55968712 -29727042 - LTR43 LTR ERV1 -145 457 405 4174 172 60 65 chr15 55968712 55968877 -29726877 - L1MB3 LINE L1 -1622 4630 4466 759 81 0 0 chr15 55968994 55969093 -29726661 + L1P LINE L1 1 99 -6047 * 5289 64 0 4 chr15 55969074 55969775 -29725979 + L1P LINE L1 1081 1778 -4368 334 313 27 0 chr15 55969876 55969988 -29725766 - L1MB3 LINE L1 -3019 3196 3082 195 100 0 0 chr15 55969990 55970020 -29725734 + (T)n Simple_repeat Simple_repeat 1 30 0 225 302 10 0 chr15 55970040 55970136 -29725618 - L1MB3 LINE L1 -3114 3101 3005 1330 199 106 34 chr15 55970141 55970462 -29725292 - MER2 DNA MER2_type 0 345 2 2127 268 66 8 chr15 55970467 55971603 -29724151 - L1MB3 LINE L1 -3235 2980 1809 30 0 0 0 chr15 55971643 55971673 -29724081 + AT_rich Low_complexity Low_complexity 1 30 0 619 296 169 12 chr15 55971763 55972260 -29723494 - HAL1 LINE L1 -1932 575 1 22 35 0 0 chr15 55972590 55972619 -29723135 + AT_rich Low_complexity Low_complexity 1 29 0 229 222 0 0 chr15 55972826 55972889 -29722865 - L1MB2 LINE L1 -34 6137 6075 6096 148 0 0 chr15 55972927 55973832 -29721922 - L1PA3 LINE L1 0 6155 5226 3276 32 0 2 chr15 55973832 55974234 -29721520 + L1PA3 LINE L1 4848 5248 -898 357 261 65 0 chr15 55975138 55975230 -29720524 - MER103 DNA DNA -67 99 2 1822 158 0 4 chr15 55975713 55975986 -29719768 + AluSx SINE Alu 1 272 -40 1055 271 30 24 chr15 55976086 55976418 -29719336 - MSTD LTR MaLR -62 334 1 1709 216 16 0 chr15 55976419 55976798 -29718956 - L1 LINE L1 -2140 4242 3858 2588 217 83 12 chr15 55976810 55977518 -29718236 - MER21B LTR ERV1 -1 862 43 323 316 0 0 chr15 55977516 55977592 -29718162 - MER21B LTR ERV1 -769 94 19 * 305 164 18 18 chr15 55977628 55977683 -29718071 - MER21B LTR ERV1 -797 66 12 4204 237 105 39 chr15 55977694 55979478 -29716276 - L1 LINE L1 -2522 3860 2037 1484 199 3 31 chr15 55979478 55979765 -29715989 - AluJo SINE Alu -33 279 1 4204 237 105 39 chr15 55979765 55980908 -29714846 - L1 LINE L1 -4345 2037 971 2198 103 0 0 chr15 55982882 55983208 -29712546 - AluSg SINE Alu 0 326 1 323 118 0 3 chr15 55983162 55983218 -29712536 - Alu SINE Alu -255 46 1 798 131 0 36 chr15 55983314 55983451 -29712303 - FLAM_C SINE Alu -1 132 1 241 255 101 15 chr15 55983987 55984142 -29711612 + MIR SINE MIR 1 167 -95 819 223 170 0 chr15 55984407 55984910 -29710844 + L1MEc LINE L1 2030 2589 -3626 2588 178 93 14 chr15 55984910 55985501 -29710253 + L1MB7 LINE L1 5538 6175 -9 397 284 24 0 chr15 55985501 55985628 -29710126 + L1MEc LINE L1 2580 2709 -3506 284 175 136 12 chr15 55985625 55985842 -29709912 + L1ME2 LINE L1 5635 5929 -237 * 6774 43 2 69 chr15 55985842 55985974 -29709780 + L1PA6 LINE L1 5180 5319 -835 2333 80 3 3 chr15 55985974 55986276 -29709478 + AluY SINE Alu 1 302 -9 6774 43 2 69 chr15 55986276 55987182 -29708572 + L1PA6 LINE L1 5319 6154 0 284 175 136 12 chr15 55987182 55987197 -29708557 + L1ME2 LINE L1 5929 5941 -225 408 303 0 0 chr15 55988110 55988209 -29707545 + MER117 DNA MER1_type 2 100 -97 216 276 17 0 chr15 55988326 55988384 -29707370 + MIR SINE MIR 87 145 -63 26 50 0 0 chr15 55988410 55988450 -29707304 + AT_rich Low_complexity Low_complexity 1 40 0 198 217 22 22 chr15 55988950 55988996 -29706758 - L2 LINE L2 -13 3300 3255 1704 223 115 24 chr15 55990928 55991546 -29704208 + L1MC4 LINE L1 7348 8021 -21 233 254 95 0 chr15 55992102 55992165 -29703589 - MIR SINE MIR -108 154 86 881 289 22 0 chr15 55992168 55992400 -29703354 - MIR SINE MIR 0 262 26 885 319 122 21 chr15 55992780 55993491 -29702263 + L1MDa LINE L1 17 643 -5897 1046 269 30 117 chr15 55993674 55994223 -29701531 + L1MDa LINE L1 1424 2026 -4514 1845 153 17 0 chr15 55994223 55994524 -29701230 + AluSq SINE Alu 1 306 -7 1046 269 30 117 chr15 55994524 55994593 -29701161 + L1MDa LINE L1 2026 2099 -4441 1705 146 26 57 chr15 55994593 55994943 -29700811 - MER47A DNA MER2_type -1 365 27 1381 208 96 21 chr15 55994962 55995399 -29700355 + L1MDa LINE L1 2111 2580 -3960 249 83 0 0 chr15 55995439 55995475 -29700279 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 292 11 0 chr15 55995475 55995564 -29700190 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 635 234 161 21 chr15 55995629 55996162 -29699592 + L1MDa LINE L1 2598 3205 -3335 * 1161 283 47 27 chr15 55996152 55996706 -29699048 + L1MDa LINE L1 3683 4247 -2293 36506 94 11 8 chr15 55996718 56002844 -29692910 + L1PA6 LINE L1 11 6153 -1 2268 107 0 0 chr15 56002850 56003149 -29692605 + AluSg SINE Alu 1 299 -11 2971 222 68 45 chr15 56003149 56004181 -29691573 + L1MDa LINE L1 4238 5292 -1248 285 213 0 0 chr15 56004186 56004247 -29691507 - AluJo SINE Alu 0 302 242 1008 180 17 0 chr15 56004249 56004427 -29691327 - AluJo SINE Alu -131 181 1 1217 222 90 3 chr15 56004432 56004974 -29690780 + L1MDa LINE L1 5295 5890 -743 680 205 0 42 chr15 56004989 56005179 -29690575 + L1MB8 LINE L1 5997 6178 0 22 0 0 0 chr15 56005424 56005446 -29690308 + AT_rich Low_complexity Low_complexity 1 22 0 421 193 98 92 chr15 56005544 56005646 -29690108 - L1MC5 LINE L1 -44 7917 7817 611 151 92 8 chr15 56005646 56005765 -29689989 - FLAM_A SINE Alu -4 129 1 421 193 98 92 chr15 56005765 56005968 -29689786 - L1MC5 LINE L1 -144 7817 7610 23 0 0 0 chr15 56006094 56006117 -29689637 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr15 56006294 56006325 -29689429 + AT_rich Low_complexity Low_complexity 1 31 0 1469 258 103 68 chr15 56006656 56006750 -29689004 - L1M4 LINE L1 -2325 3821 3732 2458 50 0 10 chr15 56006750 56007049 -29688705 + AluY SINE Alu 1 296 -15 1469 258 103 68 chr15 56007049 56007499 -29688255 - L1M4 LINE L1 -2414 3732 3299 278 132 0 0 chr15 56007499 56007537 -29688217 + U2 snRNA snRNA 1 38 -150 1469 258 103 68 chr15 56007537 56008046 -29687708 - L1M4 LINE L1 -2847 3299 2692 308 355 39 94 chr15 56008115 56008521 -29687233 + L1ME LINE L1 224 607 -5598 230 255 98 20 chr15 56059682 56059784 -29635970 - MIR SINE MIR -56 152 43 435 260 8 16 chr15 56060003 56060130 -29635624 - L2 LINE L2 -213 3059 2934 260 331 51 11 chr15 56060552 56060727 -29635027 - MIR SINE MIR -17 245 64 201 208 19 0 chr15 56061052 56061105 -29634649 + MIR SINE MIR 71 124 -84 1422 88 0 0 chr15 56061863 56062033 -29633721 - AluSx SINE Alu -141 171 2 379 302 69 46 chr15 56062109 56062718 -29633036 + L1ME LINE L1 968 1590 -4806 241 98 20 39 chr15 56062798 56062849 -29632905 + (CTATA)n Simple_repeat Simple_repeat 4 53 0 1215 182 15 0 chr15 56062968 56063171 -29632583 + AluJo SINE Alu 5 210 -102 2415 87 0 0 chr15 56063278 56063578 -29632176 - AluY SINE Alu -11 300 1 1980 148 3 34 chr15 56063578 56063957 -29631797 + L1 LINE L1 4677 5043 -1103 3018 177 27 60 chr15 56064152 56064308 -29631446 - L1 LINE L1 -1431 4715 4555 2131 130 0 0 chr15 56064308 56064601 -29631153 - AluSx SINE Alu -19 293 1 3018 177 27 60 chr15 56064601 56065228 -29630526 - L1 LINE L1 -1591 4555 3958 279 0 0 0 chr15 56065235 56065266 -29630488 + (T)n Simple_repeat Simple_repeat 1 31 0 6817 166 46 26 chr15 56065376 56066623 -29629131 + L1 LINE L1 3093 4314 -1832 2333 104 0 0 chr15 56066623 56066920 -29628834 + AluY SINE Alu 1 297 -14 6817 166 46 26 chr15 56066920 56066952 -29628802 + L1 LINE L1 4314 4344 -1802 1954 157 0 3 chr15 56066952 56067252 -29628502 + AluJb SINE Alu 1 299 -13 6817 166 46 26 chr15 56067252 56067493 -29628261 + L1 LINE L1 4344 4644 -1502 1426 161 0 108 chr15 56067493 56067816 -29627938 + AluJo SINE Alu 1 288 -24 225 366 38 15 chr15 56067836 56067967 -29627787 + MIR SINE MIR 20 153 -109 282 339 46 20 chr15 56068165 56068360 -29627394 + MIR SINE MIR 53 252 -10 281 316 23 23 chr15 56068760 56068893 -29626861 + MIR3 SINE MIR 9 141 -67 189 196 0 0 chr15 56069152 56069198 -29626556 + G-rich Low_complexity Low_complexity 1 46 0 365 313 55 43 chr15 56069307 56069430 -29626324 - MER91A DNA MER1_type -26 170 43 1009 260 120 15 chr15 56069430 56069837 -29625917 - LTR16A LTR ERVL 0 450 1 365 313 55 43 chr15 56069837 56069876 -29625878 - MER91A DNA MER1_type -153 43 6 2425 94 3 0 chr15 56070415 56070724 -29625030 + AluSp SINE Alu 3 312 -1 1045 92 14 7 chr15 56070872 56071014 -29624740 + AluSq/x SINE Alu 5 147 -166 4843 255 50 64 chr15 56071247 56073261 -29622493 + L1M3de LINE L1 371 2137 -4516 484 166 0 55 chr15 56073361 56073524 -29622230 + pTR5 LTR ERV1 1107 1260 -1178 * 1500 108 1 27 chr15 56073519 56073787 -29621967 + pTR5 LTR ERV1 172 558 -156 1692 131 4 12 chr15 56073789 56074033 -29621721 - AluSx SINE Alu -70 242 1 1622 264 134 52 chr15 56074066 56074415 -29621339 - L1M4 LINE L1 -2411 3735 3416 1756 133 7 50 chr15 56074415 56074717 -29621037 - AluJo SINE Alu -23 289 1 1622 264 134 52 chr15 56074717 56075198 -29620556 - L1M4 LINE L1 -2730 3416 2976 2081 136 3 3 chr15 56075198 56075508 -29620246 + AluSx SINE Alu 1 310 -2 1622 264 134 52 chr15 56075508 56075941 -29619813 - L1M4 LINE L1 -3170 2976 2367 528 65 0 0 chr15 56076003 56076080 -29619674 + (CCTG)n Simple_repeat Simple_repeat 2 78 0 272 113 38 0 chr15 56076082 56076135 -29619619 + CT-rich Low_complexity Low_complexity 3 57 0 2238 245 78 58 chr15 56076236 56077192 -29618562 - L1 LINE L1 -1987 5578 4603 1010 174 29 0 chr15 56077203 56077375 -29618379 - AluSg/x SINE Alu -2 310 134 2220 140 0 0 chr15 56077375 56077683 -29618071 - AluSx SINE Alu -4 308 1 1931 235 67 79 chr15 56077685 56077896 -29617858 - L1 LINE L1 -2970 4595 4383 2388 87 10 0 chr15 56077896 56078206 -29617548 - AluSp SINE Alu 0 313 1 1931 235 67 79 chr15 56078206 56079137 -29616617 - L1 LINE L1 -3182 4383 3443 216 0 0 0 chr15 56079137 56079161 -29616593 + (TG)n Simple_repeat Simple_repeat 1 24 0 1931 235 67 79 chr15 56079161 56079680 -29616074 - L1 LINE L1 -4122 3443 2919 7965 93 144 13 chr15 56080323 56081533 -29614221 - SVA Other Other 0 1386 19 4485 153 22 32 chr15 56081733 56082576 -29613178 - L1MB8 LINE L1 0 6178 5344 1974 143 14 3 chr15 56082965 56083259 -29612495 - AluSx SINE Alu -15 297 1 339 314 29 7 chr15 56084423 56084560 -29611194 - MIR SINE MIR -106 156 17 235 83 0 28 chr15 56084758 56084794 -29610960 - MLT1L LTR MaLR -4 611 577 2575 253 50 21 chr15 56085970 56086822 -29608932 - MER45C DNA AcHobo -3 950 1 451 311 34 53 chr15 56086822 56087225 -29608529 + L2 LINE L2 2657 3054 -218 2253 125 0 3 chr15 56087287 56087600 -29608154 - AluSx SINE Alu 0 312 1 385 250 70 23 chr15 56088514 56088642 -29607112 - MIR SINE MIR -32 230 97 30199 70 6 5 chr15 56088744 56093560 -29602194 + L1PA6 LINE L1 1332 6152 -2 2794 212 40 9 chr15 56093540 56094192 -29601562 + L1 LINE L1 2370 3041 -3105 * 2166 107 0 3 chr15 56094192 56094483 -29601271 + AluSx SINE Alu 1 290 -22 1445 160 51 34 chr15 56094591 56094947 -29600807 - pTR5 LTR ERV1 -1332 1106 745 478 171 0 0 chr15 56094947 56095029 -29600725 + AluS SINE Alu 231 312 0 771 183 243 93 chr15 56095067 56095434 -29600320 + L1MC4a LINE L1 3746 4167 -1979 3147 204 176 9 chr15 56095434 56095525 -29600229 + L1MC4 LINE L1 6854 6928 -1114 1590 136 110 4 chr15 56095525 56095797 -29599957 + AluJo SINE Alu 1 301 -11 3147 204 176 9 chr15 56095797 56096617 -29599137 + L1MC4 LINE L1 6928 7918 -124 226 222 0 0 chr15 56096619 56096664 -29599090 + (TATG)n Simple_repeat Simple_repeat 4 48 0 325 237 92 53 chr15 56096825 56096956 -29598798 + L1MC4 LINE L1 7907 8042 0 * 477 276 97 21 chr15 56096925 56097204 -29598550 + L1MC4a LINE L1 5007 5306 -840 948 142 0 22 chr15 56097218 56097352 -29598402 + FLAM_C SINE Alu 2 132 -1 447 251 203 4 chr15 56097389 56097643 -29598111 + L1MC4a LINE L1 5293 5596 -566 318 342 87 12 chr15 56097643 56097804 -29597950 + L2 LINE L2 2805 2977 -295 593 322 89 33 chr15 56097885 56098245 -29597509 + MLT1K LTR MaLR 103 482 -106 298 335 196 8 chr15 56098306 56098566 -29597188 + L2 LINE L2 3005 3313 0 275 231 188 83 chr15 56099218 56099435 -29596319 + L1MC4a LINE L1 5790 5983 -1825 4018 153 31 39 chr15 56099435 56099661 -29596093 + L1MB3 LINE L1 5453 5679 -504 1875 170 3 3 chr15 56099661 56099967 -29595787 - AluSx SINE Alu -6 306 1 4018 153 31 39 chr15 56099967 56100477 -29595277 + L1MB3 LINE L1 5679 6183 0 275 231 188 83 chr15 56100477 56100632 -29595122 + L1MC4a LINE L1 5983 6201 -1607 1446 189 29 32 chr15 56100684 56100997 -29594757 + AluJo SINE Alu 1 312 0 273 231 43 77 chr15 56100997 56101107 -29594647 + L1MEc LINE L1 1587 1694 -4702 2512 63 0 0 chr15 56101234 56101535 -29594219 - AluY SINE Alu -10 301 1 246 298 0 0 chr15 56101556 56101613 -29594141 + Zaphod DNA AcHobo 24 80 -3951 358 273 0 45 chr15 56102082 56102192 -29593562 + MER115 DNA AcHobo 589 693 0 206 238 0 0 chr15 56102312 56102354 -29593400 + A-rich Low_complexity Low_complexity 3 44 0 382 236 241 10 chr15 56102702 56102905 -29592849 + MER112 DNA MER1_type 5 254 -6 180 0 0 0 chr15 56103094 56103114 -29592640 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2648 158 37 31 chr15 56103251 56103759 -29591995 + L1MB8 LINE L1 5663 6173 -5 645 277 133 4 chr15 56103770 56104041 -29591713 + L2 LINE L2 2719 3051 -262 195 42 0 0 chr15 56104047 56104071 -29591683 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1811 158 0 4 chr15 56104071 56104350 -29591404 - AluJb SINE Alu -28 284 7 310 202 111 0 chr15 56104367 56104466 -29591288 + L1MA9 LINE L1 2914 3023 -4542 720 113 50 35 chr15 56104467 56104608 -29591146 - L1P5 LINE L1 -391 5765 5623 3126 175 18 8 chr15 56104708 56105601 -29590153 + L1MA9 LINE L1 6311 7212 -519 1153 135 24 0 chr15 56105613 56105783 -29589971 - Tigger3b DNA MER2_type 0 1232 1059 * 1914 154 41 19 chr15 56105757 56106076 -29589678 + MER1B DNA MER1_type 14 339 0 5169 143 71 36 chr15 56106076 56106844 -29588910 - Tigger3b DNA MER2_type -1961 1067 252 2285 54 34 34 chr15 56106844 56107141 -29588613 - AluY SINE Alu -14 297 1 5169 143 71 36 chr15 56107141 56107403 -29588351 - Tigger3b DNA MER2_type -2776 252 1 2063 206 31 17 chr15 56107404 56107880 -29587874 + L1MA9 LINE L1 7210 7692 -39 3261 210 52 17 chr15 56107892 56108791 -29586963 + L1MC1 LINE L1 4368 5298 -848 9315 54 4 0 chr15 56108792 56109952 -29585802 + L1P LINE L1 1 1165 -4981 8034 29 5 0 chr15 56109952 56110939 -29584815 + L1PA4 LINE L1 5162 6152 -3 3455 147 9 2 chr15 56110958 56111522 -29584232 + L1MC1 LINE L1 5283 5850 -483 1804 159 0 17 chr15 56111526 56111827 -29583927 + AluJb SINE Alu 1 296 -16 1037 172 126 15 chr15 56111838 56112036 -29583718 + AluJo SINE Alu 1 220 -92 277 146 0 0 chr15 56112036 56112077 -29583677 + FLAM SINE Alu 86 126 -7 2647 143 12 23 chr15 56112095 56112527 -29583227 + L1MC1 LINE L1 5897 6323 -10 2026 127 0 3 chr15 56113366 56113718 -29582036 + AluSq SINE Alu 1 351 0 180 179 0 26 chr15 56115375 56115414 -29580340 - MIR3 SINE MIR -32 176 139 2285 111 0 3 chr15 56115928 56116235 -29579519 - AluSx SINE Alu -6 306 1 4040 14 0 0 chr15 56116332 56116765 -29578989 + L1PA3 LINE L1 5723 6155 0 299 326 68 15 chr15 56117000 56117132 -29578622 + MIR3 SINE MIR 47 185 -23 193 241 37 0 chr15 56117618 56117672 -29578082 - MIR SINE MIR -72 136 81 186 43 0 0 chr15 56117852 56117875 -29577879 + (TGG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr15 56118394 56118417 -29577337 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 357 260 144 20 chr15 56119168 56119298 -29576456 + MIR SINE MIR 16 155 -65 237 235 0 29 chr15 56119952 56120020 -29575734 + MIR3 SINE MIR 93 158 -50 745 250 142 0 chr15 56120682 56120894 -29574860 - MIR SINE MIR -1 261 20 2109 108 0 0 chr15 56121200 56121469 -29574285 + AluSx SINE Alu 1 269 -43 2256 112 0 0 chr15 56122527 56122822 -29572932 - AluSx SINE Alu -16 296 2 375 23 0 0 chr15 56123721 56123765 -29571989 + (CA)n Simple_repeat Simple_repeat 2 45 0 899 114 23 0 chr15 56123957 56124089 -29571665 - AluJo SINE Alu -177 135 1 430 174 58 12 chr15 56124124 56124210 -29571544 - L1MB2 LINE L1 -2 6169 6080 307 297 15 67 chr15 56124285 56124480 -29571274 - L1ME LINE L1 -287 5834 5650 343 289 117 17 chr15 56125063 56125243 -29570511 + L1MC4a LINE L1 5987 6184 -1624 2159 163 44 62 chr15 56126744 56127180 -29568574 + MSTC LTR MaLR 1 428 0 2763 107 14 17 chr15 56127805 56128218 -29567536 + L1PB2 LINE L1 5619 6030 -121 184 297 54 0 chr15 56128393 56128467 -29567287 + L2 LINE L2 999 1076 -2238 757 328 69 67 chr15 56128651 56129584 -29566170 - L2 LINE L2 -3 3269 2349 2134 269 36 23 chr15 56129615 56130217 -29565537 + L1P4 LINE L1 1 610 -6177 10749 210 25 62 chr15 56130567 56131439 -29564315 + L1P4 LINE L1 1324 2226 -4591 2446 147 65 8 chr15 56131439 56131841 -29563913 + MSTA LTR MaLR 3 427 -1 10749 210 25 62 chr15 56131841 56133397 -29562357 + L1P4 LINE L1 2226 3837 -2980 247 162 0 0 chr15 56133397 56133434 -29562320 - tRNA-Asp-GAC tRNA tRNA -38 37 1 10749 210 25 62 chr15 56133434 56135465 -29560289 + L1P4 LINE L1 3837 5940 -877 2312 97 0 7 chr15 56135465 56135775 -29559979 + AluY SINE Alu 1 308 -3 10749 210 25 62 chr15 56135775 56136160 -29559594 + L1P4 LINE L1 5940 6039 -778 2662 98 50 6 chr15 56136160 56136519 -29559235 - THE1C LTR MaLR 0 375 1 10749 210 25 62 chr15 56136519 56136601 -29559153 + L1P4 LINE L1 6039 6122 -695 4159 122 22 0 chr15 56136592 56137267 -29558487 + L1PA15 LINE L1 5297 5986 -179 * 948 195 12 0 chr15 56138964 56139133 -29556621 + AluJb SINE Alu 130 300 -12 2260 128 0 0 chr15 56140062 56140358 -29555396 + AluSx SINE Alu 1 296 -16 1664 139 47 23 chr15 56140698 56140955 -29554799 - MER2 DNA MER2_type -37 308 42 2121 126 27 24 chr15 56140955 56141329 -29554425 + THE1C LTR MaLR 1 375 0 1664 139 47 23 chr15 56141329 56141372 -29554382 - MER2 DNA MER2_type -303 42 1 309 229 90 0 chr15 56141420 56141502 -29554252 - MIR SINE MIR -38 170 78 382 242 129 27 chr15 56142036 56142192 -29553562 - MIR SINE MIR -63 145 24 607 212 0 53 chr15 56142375 56142507 -29553247 + FLAM_A SINE Alu 3 127 -6 599 304 36 10 chr15 56142605 56142799 -29552955 - MIR SINE MIR -8 254 56 222 294 15 0 chr15 56142948 56143016 -29552738 + GA-rich Low_complexity Low_complexity 4 72 0 10475 146 26 14 chr15 56143180 56146049 -29549705 + L1MA2 LINE L1 3256 6147 -7 1402 114 61 0 chr15 56146074 56146320 -29549434 + L1MA2 LINE L1 6042 6302 -2 1033 208 0 0 chr15 56146338 56146506 -29549248 + AluJo SINE Alu 1 168 -144 2998 159 159 28 chr15 56146609 56147214 -29548540 + L1PA14 LINE L1 1607 2328 -5253 2181 117 19 26 chr15 56147214 56147591 -29548163 - THE1C LTR MaLR 0 375 2 2998 159 159 28 chr15 56147591 56147726 -29548028 + L1PA14 LINE L1 2328 2444 -5137 17587 179 19 13 chr15 56147917 56148067 -29547687 + L1PA14 LINE L1 2471 2619 -4980 2084 121 3 0 chr15 56148067 56148356 -29547398 + AluSx SINE Alu 21 310 -2 17587 179 19 13 chr15 56148356 56151478 -29544276 + L1PA14 LINE L1 2619 5720 -1879 2178 97 0 0 chr15 56151478 56151757 -29543997 + AluSc SINE Alu 22 300 -9 17587 179 19 13 chr15 56151757 56152146 -29543608 + L1PA14 LINE L1 5720 6105 -1494 2297 95 0 38 chr15 56152146 56152462 -29543292 + AluY SINE Alu 1 304 -7 17587 179 19 13 chr15 56152462 56153893 -29541861 + L1PA14 LINE L1 6105 7594 -5 346 221 15 0 chr15 56153893 56154029 -29541725 + (TA)n Simple_repeat Simple_repeat 1 138 0 871 204 24 6 chr15 56154174 56154341 -29541413 + AluJb SINE Alu 119 288 -24 27 0 0 0 chr15 56154341 56154368 -29541386 + AT_rich Low_complexity Low_complexity 1 27 0 526 211 88 141 chr15 56154572 56154620 -29541134 + MIR SINE MIR 4 53 -209 2000 153 6 10 chr15 56154620 56154933 -29540821 + AluSx SINE Alu 1 312 0 526 211 88 141 chr15 56154933 56155111 -29540643 + MIR SINE MIR 53 218 -44 22 35 0 0 chr15 56155158 56155187 -29540567 + AT_rich Low_complexity Low_complexity 1 29 0 4496 109 6 12 chr15 56155928 56156604 -29539150 - L1PA15 LINE L1 0 6165 5494 230 277 76 0 chr15 56156925 56157044 -29538710 + HAL1 LINE L1 909 1036 -1471 1901 93 65 18 chr15 56157183 56157485 -29538269 - AluSx SINE Alu 0 312 1 22 0 0 0 chr15 56157703 56157725 -29538029 + AT_rich Low_complexity Low_complexity 1 22 0 331 295 19 19 chr15 56158057 56158213 -29537541 + L1 LINE L1 4864 5019 -1127 24 53 0 0 chr15 56158242 56158280 -29537474 + AT_rich Low_complexity Low_complexity 1 38 0 1851 200 109 26 chr15 56158307 56158492 -29537262 + L1MC4 LINE L1 6872 7040 -1002 192 97 0 0 chr15 56158492 56158523 -29537231 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1851 200 109 26 chr15 56158523 56158953 -29536801 + L1MC4 LINE L1 7040 7538 -504 2391 126 5 18 chr15 56159232 56159612 -29536142 - THE1C LTR MaLR 0 375 1 30 27 0 0 chr15 56160196 56160233 -29535521 + AT_rich Low_complexity Low_complexity 1 37 0 189 348 0 89 chr15 56160941 56161076 -29534678 - L2 LINE L2 -17 3255 3133 735 231 77 81 chr15 56161108 56161556 -29534198 + MLT1H1 LTR MaLR 1 440 -115 1220 213 61 9 chr15 56161622 56161950 -29533804 - L1MC4a LINE L1 -1192 6616 6272 663 177 19 70 chr15 56162124 56162282 -29533472 - MER58B DNA MER1_type 0 341 192 624 258 37 5 chr15 56162397 56162614 -29533140 - L1MC4 LINE L1 -141 7901 7678 275 239 66 46 chr15 56162609 56162806 -29532948 + L1MDa LINE L1 1595 1795 -4745 * 488 305 168 11 chr15 56162879 56163164 -29532590 - L2 LINE L2 -1437 1877 1548 249 33 0 0 chr15 56163713 56163743 -29532011 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 186 0 86 chr15 56165164 56165234 -29530520 + L2 LINE L2 2565 2628 -686 738 306 75 32 chr15 56165235 56165608 -29530146 + MLT1J2 LTR MaLR 3 391 -59 349 156 0 0 chr15 56165627 56165691 -29530063 + L1MA4 LINE L1 4157 4220 -1926 1055 184 6 0 chr15 56165702 56165881 -29529873 + AluJo SINE Alu 121 300 -12 5160 161 48 7 chr15 56165881 56167856 -29527898 + L1MA4 LINE L1 4240 6298 -2 313 250 9 0 chr15 56168001 56168117 -29527637 + L1ME LINE L1 799 915 -5155 301 307 20 40 chr15 56168163 56168313 -29527441 + L1ME LINE L1 1007 1153 -4927 341 308 68 34 chr15 56168842 56168988 -29526766 + L3 LINE CR1 1381 1531 -46 257 181 56 56 chr15 56170048 56170120 -29525634 - L2 LINE L2 0 3272 3201 180 143 54 0 chr15 56170120 56170176 -29525578 + (TA)n Simple_repeat Simple_repeat 1 59 0 311 255 43 11 chr15 56170178 56170272 -29525482 + L1MC4 LINE L1 6607 6703 -1339 1794 174 3 0 chr15 56170280 56170562 -29525192 - AluJo SINE Alu -29 283 1 306 125 0 0 chr15 56170664 56170712 -29525042 + (A)n Simple_repeat Simple_repeat 1 48 0 221 265 12 60 chr15 56170764 56170847 -29524907 - L2 LINE L2 -277 2995 2917 3493 110 70 0 chr15 56170906 56171424 -29524330 - MER41C LTR ERV1 0 554 1 2075 137 0 7 chr15 56171635 56171941 -29523813 + AluSx SINE Alu 1 304 -8 2930 211 107 68 chr15 56171951 56173589 -29522165 + L1MC5 LINE L1 5701 7453 -508 1931 140 6 19 chr15 56173589 56173904 -29521850 - AluJb SINE Alu -1 311 1 2930 211 107 68 chr15 56173904 56174155 -29521599 + L1MC5 LINE L1 7453 7693 -268 267 367 33 13 chr15 56176226 56176376 -29519378 - L2 LINE L2 0 3313 3161 300 363 15 7 chr15 56177510 56177645 -29518109 + MIR3 SINE MIR 11 146 -62 223 250 17 0 chr15 56178143 56178203 -29517551 - MIR SINE MIR -62 146 86 395 286 134 0 chr15 56178220 56178391 -29517363 + MIR SINE MIR 19 212 -50 227 303 61 67 chr15 56178610 56178775 -29516979 - L2 LINE L2 -2 3270 3107 2198 128 10 0 chr15 56178940 56179244 -29516510 - 7SLRNA srpRNA srpRNA -13 307 1 5847 128 26 10 chr15 56179249 56179376 -29516378 - L1MA5 LINE L1 -2 6298 6174 2289 117 3 0 chr15 56179376 56179685 -29516069 - AluSx SINE Alu -2 310 1 5847 128 26 10 chr15 56179685 56180810 -29514944 - L1MA5 LINE L1 -126 6174 5030 285 128 0 0 chr15 56180811 56180858 -29514896 + (T)n Simple_repeat Simple_repeat 1 47 0 663 274 54 46 chr15 56183627 56183868 -29511886 - MIR SINE MIR -1 261 19 351 290 72 105 chr15 56184101 56184653 -29511101 + L1M2 LINE L1 793 1326 -5523 334 287 108 75 chr15 56184437 56184744 -29511010 - L1M2 LINE L1 -5649 1200 884 * 532 224 133 18 chr15 56185509 56185674 -29510080 - MIR3 SINE MIR -2 206 23 222 341 174 7 chr15 56186212 56186350 -29509404 - MIR3 SINE MIR -38 170 10 489 230 254 0 chr15 56186504 56186669 -29509085 + MIR SINE MIR 29 235 -27 2129 127 7 0 chr15 56186753 56187052 -29508702 - AluSq SINE Alu -12 301 1 371 216 116 39 chr15 56187241 56187422 -29508332 + MER113 DNA MER1_type? 17 211 -310 344 222 192 0 chr15 56187523 56187622 -29508132 - L2 LINE L2 -4 3309 3192 2256 79 3 10 chr15 56187653 56187944 -29507810 + AluSg SINE Alu 1 289 -21 1387 195 32 65 chr15 56188723 56188926 -29506828 - MER2 DNA MER2_type -17 328 139 2217 130 23 49 chr15 56188926 56189272 -29506482 - MER1B DNA MER1_type 0 337 1 1387 195 32 65 chr15 56189272 56189407 -29506347 - MER2 DNA MER2_type -206 139 1 1941 135 28 12 chr15 56189413 56189738 -29506016 - L1MB2 LINE L1 -33 6138 5809 280 183 146 80 chr15 56189743 56189880 -29505874 - MER46A DNA MER2_type -73 163 18 682 209 15 0 chr15 56189881 56190015 -29505739 - L1MB2 LINE L1 -502 5681 5546 1880 158 30 0 chr15 56190020 56190318 -29505436 - AluJb SINE Alu -5 307 1 438 152 0 76 chr15 56190568 56190673 -29505081 - L1MA4 LINE L1 -5 6295 6199 1176 194 0 0 chr15 56190868 56191079 -29504675 - MER2 DNA MER2_type -134 211 1 909 128 40 7 chr15 56191079 56191228 -29504526 - L1MB2 LINE L1 -24 6147 5994 560 292 7 13 chr15 56191332 56191486 -29504268 + MIR SINE MIR 1 153 -109 798 147 17 0 chr15 56191495 56191611 -29504143 + AluJ SINE Alu 1 118 -184 829 199 20 0 chr15 56191681 56191832 -29503922 + AluJ SINE Alu 122 275 -37 423 0 0 0 chr15 56191842 56191889 -29503865 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 759 148 0 19 chr15 56192816 56192924 -29502830 + FLAM_A SINE Alu 23 128 -14 2130 121 0 41 chr15 56193157 56193472 -29502282 - AluSx SINE Alu -10 302 1 1328 66 48 0 chr15 56193645 56193812 -29501942 - AluSx SINE Alu -121 191 17 1782 177 0 3 chr15 56195161 56195444 -29500310 + AluSx SINE Alu 1 282 -30 522 212 115 0 chr15 56195715 56195828 -29499926 - FLAM_A SINE Alu -3 130 5 454 238 74 16 chr15 56195969 56196091 -29499663 - MIR SINE MIR -109 153 25 5253 80 25 29 chr15 56196436 56196486 -29499268 - L1MA2 LINE L1 -4 6300 6251 2394 51 41 3 chr15 56196486 56196781 -29498973 - AluY SINE Alu -5 306 1 5253 80 25 29 chr15 56196781 56197492 -29498262 - L1MA2 LINE L1 -53 6251 5542 1729 176 28 3 chr15 56198674 56198963 -29496791 + AluJo SINE Alu 1 296 -16 1968 161 0 0 chr15 56198970 56199262 -29496492 + AluSx SINE Alu 1 292 -20 2452 74 0 3 chr15 56202877 56203188 -29492566 - AluY SINE Alu -1 310 1 430 286 136 68 chr15 56203697 56204036 -29491718 + MLT1I LTR MaLR 44 405 -4 2056 143 28 63 chr15 56204518 56204917 -29490837 - L1MC1 LINE L1 -5 6328 5944 2516 165 76 24 chr15 56204921 56205126 -29490628 - L1MB3 LINE L1 -8 6175 5982 2133 106 10 3 chr15 56205126 56205418 -29490336 - AluSq SINE Alu -19 294 1 2516 165 76 24 chr15 56205418 56205429 -29490325 - L1MB3 LINE L1 -201 5982 5973 2463 86 0 0 chr15 56205429 56205733 -29490021 - AluSq SINE Alu -9 304 1 2516 165 76 24 chr15 56205733 56206055 -29489699 - L1MB3 LINE L1 -210 5973 5608 189 0 0 0 chr15 56206055 56206076 -29489678 + (TA)n Simple_repeat Simple_repeat 2 22 0 2615 33 33 0 chr15 56206076 56206375 -29489379 - AluY SINE Alu -2 309 1 402 319 68 34 chr15 56206454 56206948 -29488806 + LTR67 LTR ERVL 1 557 0 273 193 18 0 chr15 56207208 56207265 -29488489 - L1ME4a LINE L1 -100 6021 5964 592 211 68 8 chr15 56207761 56207894 -29487860 + MIR SINE MIR 14 154 -108 2158 100 0 17 chr15 56207910 56208199 -29487555 + AluSx SINE Alu 5 288 -24 268 154 0 46 chr15 56208199 56208255 -29487499 + L1MC4 LINE L1 6648 6702 -1340 239 265 72 0 chr15 56208214 56208297 -29487457 - L1MC4 LINE L1 -1339 6703 6615 * 1031 116 0 6 chr15 56208313 56208494 -29487260 + (TA)n Simple_repeat Simple_repeat 1 180 0 473 181 21 0 chr15 56208503 56208597 -29487157 - Tigger7 DNA MER2_type -1 2586 2491 1299 208 56 0 chr15 56208598 56208848 -29486906 - Tigger7 DNA MER2_type -469 264 1 2385 60 0 22 chr15 56208893 56209208 -29486546 + AluY SINE Alu 1 308 -3 2178 71 57 0 chr15 56209373 56209655 -29486099 - AluY SINE Alu -13 298 1 1552 237 19 84 chr15 56209662 56210122 -29485632 - L1ME3A LINE L1 0 6170 5745 2240 96 3 7 chr15 56210122 56210424 -29485330 - AluSp SINE Alu -12 301 1 1552 237 19 84 chr15 56210424 56210477 -29485277 - L1ME3A LINE L1 -425 5745 5690 1493 214 53 100 chr15 56210474 56210687 -29485067 - L1ME3A LINE L1 -1605 4541 4320 * 2474 89 0 13 chr15 56210687 56211003 -29484751 + AluSx SINE Alu 1 312 0 1493 214 53 100 chr15 56211003 56211095 -29484659 - L1ME3A LINE L1 -1826 4320 4225 1050 173 31 0 chr15 56211095 56211257 -29484497 - FAM SINE Alu -8 167 1 1493 214 53 100 chr15 56211257 56211609 -29484145 - L1ME3A LINE L1 -1921 4225 3914 341 80 40 0 chr15 56211609 56211659 -29484095 + Alu SINE Alu 244 295 -7 1936 120 6 66 chr15 56211832 56212149 -29483605 + AluSx SINE Alu 1 298 -14 551 161 0 11 chr15 56213433 56213520 -29482234 + AluJ/FLAM SINE Alu 1 86 -226 402 228 91 128 chr15 56213557 56213682 -29482072 + L1MC4a LINE L1 5841 5969 -1839 2269 89 0 51 chr15 56213682 56213996 -29481758 + AluSx SINE Alu 1 298 -14 402 228 91 128 chr15 56213996 56214221 -29481533 + L1MC4a LINE L1 5969 6178 -1630 381 161 204 10 chr15 56214796 56214925 -29480829 + MIR3 SINE MIR 37 187 -21 239 273 173 9 chr15 56214935 56215045 -29480709 + MIR3 SINE MIR 4 131 -77 372 264 103 8 chr15 56215241 56215406 -29480348 + MIR SINE MIR 1 192 -63 4476 201 62 36 chr15 56215555 56216200 -29479554 + MER69 DNA AcHobo 63 743 -1783 2217 129 3 0 chr15 56216200 56216511 -29479243 + AluJb SINE Alu 1 312 0 4476 201 62 36 chr15 56216511 56216852 -29478902 + MER69 DNA AcHobo 743 1074 -1452 2314 196 47 30 chr15 56216859 56217341 -29478413 + MER69 DNA AcHobo 1941 2436 -90 2138 115 3 16 chr15 56217341 56217653 -29478101 - AluSx SINE Alu -4 308 1 2314 196 47 30 chr15 56217653 56217741 -29478013 + MER69 DNA AcHobo 2436 2521 -5 2304 112 0 6 chr15 56218115 56218429 -29477325 - AluSp SINE Alu -1 312 1 946 100 0 8 chr15 56218532 56218662 -29477092 - L1MA6 LINE L1 -11 6289 6161 227 156 22 22 chr15 56218775 56218820 -29476934 - LTR67 LTR ERVL 0 557 513 1879 149 197 3 chr15 56218981 56219336 -29476418 + MSTB LTR MaLR 1 424 -2 23 0 0 0 chr15 56219468 56219491 -29476263 + AT_rich Low_complexity Low_complexity 1 23 0 2227 312 77 47 chr15 56219528 56219831 -29475923 - HERVL LTR ERVL -342 5312 5020 1190 188 5 0 chr15 56219831 56220039 -29475715 + MER3 DNA MER1_type 1 209 0 2227 312 77 47 chr15 56220039 56220413 -29475341 - HERVL LTR ERVL -634 5020 4659 2185 116 0 3 chr15 56220413 56220714 -29475040 - AluSx SINE Alu -12 300 1 2227 312 77 47 chr15 56220714 56221749 -29474005 - HERVL LTR ERVL -995 4659 3547 2082 130 0 0 chr15 56222105 56222389 -29473365 - AluSx SINE Alu -24 288 5 265 262 13 98 chr15 56222394 56222619 -29473135 - L1M4 LINE L1 -2685 3461 3256 2270 82 0 0 chr15 56222700 56222999 -29472755 - AluSg SINE Alu 0 299 1 478 211 114 0 chr15 56223125 56223239 -29472515 + L2 LINE L2 3187 3313 0 971 143 0 0 chr15 56223389 56223522 -29472232 - FLAM_C SINE Alu 0 133 1 358 286 134 14 chr15 56223604 56223821 -29471933 - L1M4 LINE L1 -3311 2835 2593 278 272 39 11 chr15 56223939 56224110 -29471644 - L1M4 LINE L1 -3756 2390 2208 2044 141 20 0 chr15 56224323 56224627 -29471127 + AluSx SINE Alu 1 310 -2 2047 159 127 43 chr15 56224718 56225184 -29470570 + MLT1D LTR MaLR 1 505 0 605 183 92 0 chr15 56226138 56226258 -29469496 + FLAM_A SINE Alu 1 131 -2 1996 218 141 15 chr15 56226337 56226936 -29468818 + L1ME2 LINE L1 5474 6149 -15 327 289 10 0 chr15 56226945 56227042 -29468712 + MER103 DNA DNA 61 158 -8 218 300 217 17 chr15 56229291 56229411 -29466343 + L3 LINE CR1 1338 1481 -96 1968 161 0 0 chr15 56229480 56229772 -29465982 + AluSx SINE Alu 1 292 -20 2461 74 0 3 chr15 56233387 56233699 -29462055 - AluY SINE Alu 0 311 1 430 286 136 68 chr15 56234208 56234547 -29461207 + MLT1I LTR MaLR 44 405 -4 2041 145 28 63 chr15 56235029 56235428 -29460326 - L1MC1 LINE L1 -5 6328 5944 3689 148 55 57 chr15 56235432 56235637 -29460117 - L1MB3 LINE L1 -8 6175 5971 2133 106 10 3 chr15 56235637 56235929 -29459825 - AluSq SINE Alu -19 294 1 3689 148 55 57 chr15 56235929 56235940 -29459814 - L1MB3 LINE L1 -212 5971 5961 2429 89 0 0 chr15 56235940 56236244 -29459510 - AluSq SINE Alu -9 304 1 3689 148 55 57 chr15 56236244 56236566 -29459188 - L1MB3 LINE L1 -222 5961 5640 351 0 0 0 chr15 56236566 56236605 -29459149 + (TA)n Simple_repeat Simple_repeat 1 39 0 2765 32 0 0 chr15 56236606 56236917 -29458837 - AluY SINE Alu 0 311 1 3689 148 55 57 chr15 56236917 56237145 -29458609 - L1MB3 LINE L1 -542 5641 5407 256 83 0 0 chr15 56237144 56237180 -29458574 - L1MC1 LINE L1 -2082 5960 5925 * 1916 154 0 32 chr15 56238350 56238662 -29457092 + AluJo SINE Alu 1 302 -10 316 296 74 19 chr15 56238662 56238770 -29456984 + L2 LINE L2 3157 3270 -2 4335 161 49 28 chr15 56239190 56240368 -29455386 + L1MB8 LINE L1 4752 6125 -53 1749 77 4 35 chr15 56240388 56240649 -29455105 - L1MA1 LINE L1 0 6302 6050 314 162 44 0 chr15 56240654 56240722 -29455032 + L1MB7 LINE L1 6114 6184 0 2240 104 0 0 chr15 56240979 56241258 -29454496 + AluSx SINE Alu 1 279 -33 324 0 0 0 chr15 56241258 56241294 -29454460 + (CA)n Simple_repeat Simple_repeat 1 36 0 1326 244 174 30 chr15 56241301 56241408 -29454346 + MER20B DNA MER1_type 115 205 -578 3730 100 4 28 chr15 56241408 56241948 -29453806 - MER1A DNA MER1_type 0 527 1 1326 244 174 30 chr15 56241948 56242312 -29453442 + MER20B DNA MER1_type 205 654 -129 559 279 154 13 chr15 56242369 56242759 -29452995 - LTR33 LTR ERVL -76 445 1 443 248 62 16 chr15 56242759 56242887 -29452867 + MER20B DNA MER1_type 650 783 0 26 64 0 0 chr15 56243198 56243245 -29452509 + AT_rich Low_complexity Low_complexity 1 47 0 546 215 208 7 chr15 56243650 56243794 -29451960 - MER5B DNA MER1_type 0 178 6 942 170 31 49 chr15 56243805 56244028 -29451726 - MER20B DNA MER1_type 0 219 1 2059 92 60 3 chr15 56244066 56244350 -29451404 + AluSp SINE Alu 1 300 -13 223 286 24 36 chr15 56244512 56244596 -29451158 + MIR3 SINE MIR 111 193 -15 205 150 25 0 chr15 56245181 56245221 -29450533 + MER91 DNA MER1_type 65 105 -35 912 260 180 19 chr15 56245404 56246071 -29449683 + L2 LINE L2 2516 3293 -20 243 88 0 0 chr15 56246080 56246114 -29449640 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 603 209 66 46 chr15 56246168 56246364 -29449390 + MIR SINE MIR 63 262 0 505 100 12 12 chr15 56246380 56246460 -29449294 - MADE1 DNA Mariner 0 80 1 614 190 0 16 chr15 56246474 56246595 -29449159 - FLAM_A SINE Alu -14 119 1 244 23 0 70 chr15 56247571 56247614 -29448140 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 357 226 12 12 chr15 56249097 56249181 -29446573 - MER94 DNA DNA -50 84 1 385 200 297 24 chr15 56249410 56249575 -29446179 - MARNA DNA Mariner -361 225 16 1629 149 0 36 chr15 56249772 56250048 -29445706 + AluJb SINE Alu 1 266 -46 273 240 40 30 chr15 56250138 56250238 -29445516 - HAL1b LINE L1 -57 1291 1191 317 158 18 0 chr15 56250251 56250308 -29445446 - MLT1A1 LTR MaLR 0 457 400 279 127 45 45 chr15 56250343 56250453 -29445301 + (TTTA)n Simple_repeat Simple_repeat 1 110 0 * 309 179 58 17 chr15 56250395 56250568 -29445186 + (TA)n Simple_repeat Simple_repeat 1 180 0 1271 154 37 128 chr15 56250597 56250948 -29444806 - MLT1A1 LTR MaLR -46 319 1 795 258 53 14 chr15 56251507 56251868 -29443886 - L1M4 LINE L1 -3441 2705 2331 2328 125 0 0 chr15 56251936 56252248 -29443506 - AluSx SINE Alu 0 312 1 1931 249 68 93 chr15 56252248 56253351 -29442403 + L1M4 LINE L1 3983 5059 -1087 2102 82 0 102 chr15 56253351 56253693 -29442061 + AluSc SINE Alu 1 307 -2 1931 249 68 93 chr15 56253693 56253728 -29442026 + L1M4 LINE L1 5059 5093 -1053 2309 105 0 3 chr15 56253741 56254045 -29441709 - AluSq SINE Alu -10 303 1 5170 164 18 35 chr15 56254097 56254845 -29440909 + L1MB4 LINE L1 4753 5477 -703 423 74 37 0 chr15 56254845 56254926 -29440828 + (TA)n Simple_repeat Simple_repeat 1 84 0 5170 164 18 35 chr15 56254926 56255618 -29440136 + L1MB4 LINE L1 5477 6180 0 2090 287 73 37 chr15 56255704 56256630 -29439124 + HERVL LTR ERVL 2396 3096 -1900 615 311 65 19 chr15 56256665 56256925 -29438829 + HERVL LTR ERVL 4683 4954 -700 730 283 77 30 chr15 56257576 56257873 -29437881 + LTR16A1 LTR ERVL 147 457 0 199 283 217 17 chr15 56258184 56258304 -29437450 + L3 LINE CR1 1338 1481 -96 2135 139 0 0 chr15 56258373 56258683 -29437071 + AluSx SINE Alu 1 310 -2 2039 288 89 29 chr15 56259130 56259722 -29436032 + HERVL LTR ERVL 4429 5095 -669 2274 124 0 0 chr15 56259722 56260029 -29435725 + AluSx SINE Alu 1 307 -5 2039 288 89 29 chr15 56260029 56260332 -29435422 + HERVL LTR ERVL 5095 5378 -386 282 282 80 80 chr15 56260694 56260907 -29434847 + LTR67 LTR ERVL 2 214 -343 459 175 0 88 chr15 56260961 56261075 -29434679 + LTR67 LTR ERVL 360 463 -94 3303 164 32 78 chr15 56261076 56261834 -29433920 - MER52A LTR ERV1 0 1755 1033 1029 260 89 31 chr15 56261835 56262185 -29433569 - HERVL LTR ERVL -1024 4630 4261 615 294 19 0 chr15 56262230 56262390 -29433364 - HERVL LTR ERVL -1462 4192 4030 2110 116 0 0 chr15 56262416 56262700 -29433054 - AluY SINE Alu -27 284 1 266 250 42 0 chr15 56262703 56262775 -29432979 - HERVL LTR ERVL -1683 4081 4007 723 271 88 30 chr15 56262788 56263210 -29432544 - HERVL LTR ERVL -1914 3850 3355 557 282 165 0 chr15 56263279 56263467 -29432287 - HERVL LTR ERVL -2517 3247 3029 1041 179 22 45 chr15 56263525 56263748 -29432006 - MER20 DNA MER1_type -1 218 1 1685 296 89 24 chr15 56263792 56264423 -29431331 - HERVL LTR ERVL -2843 2811 2140 1413 319 43 6 chr15 56264533 56265047 -29430707 - HERVL LTR ERVL -3738 2026 1494 24 0 0 0 chr15 56265273 56265297 -29430457 + AT_rich Low_complexity Low_complexity 1 24 0 2075 101 0 18 chr15 56265305 56265615 -29430139 + AluSg SINE Alu 2 306 0 297 327 19 51 chr15 56265681 56265748 -29430006 - HERVL LTR ERVL -4545 1219 1151 2208 97 0 14 chr15 56265748 56266076 -29429678 - AluSx SINE Alu 0 324 1 297 327 19 51 chr15 56266076 56266221 -29429533 - HERVL LTR ERVL -4613 1151 1013 2363 87 3 3 chr15 56266366 56266666 -29429088 - AluY SINE Alu -11 300 1 212 169 17 51 chr15 56266899 56266958 -29428796 + MIR SINE MIR 135 191 -71 470 242 45 6 chr15 56266985 56267142 -29428612 - MIR SINE MIR -18 244 82 196 244 0 0 chr15 56267266 56267307 -29428447 + MIR SINE MIR 208 248 -14 327 264 159 12 chr15 56267328 56267491 -29428263 + MIR SINE MIR 3 189 -73 261 0 0 0 chr15 56267500 56267529 -29428225 + (TG)n Simple_repeat Simple_repeat 2 30 0 1038 243 103 23 chr15 56267872 56267941 -29427813 - MLT1I LTR MaLR -10 399 337 2214 133 30 16 chr15 56267941 56268309 -29427445 - THE1C LTR MaLR 0 375 3 1038 243 103 23 chr15 56268309 56268540 -29427214 - MLT1I LTR MaLR -72 337 75 3801 179 92 21 chr15 56268624 56269159 -29426595 + L1MB8 LINE L1 5308 5921 -257 2314 85 0 3 chr15 56269159 56269454 -29426300 - AluY SINE Alu -15 296 3 3801 179 92 21 chr15 56269454 56269726 -29426028 + L1MB8 LINE L1 5921 6172 -6 653 321 95 32 chr15 56269778 56270180 -29425574 - L2 LINE L2 -989 2325 1950 2234 77 7 23 chr15 56270180 56270479 -29425275 - AluSc SINE Alu -15 294 1 2094 106 0 53 chr15 56270483 56270805 -29424949 - AluSx SINE Alu -7 305 1 653 321 95 32 chr15 56270805 56271052 -29424702 - L2 LINE L2 -1366 1948 1630 392 265 86 101 chr15 56271061 56271187 -29424567 + L2 LINE L2 3049 3175 -138 2118 151 89 0 chr15 56271187 56271557 -29424197 - MER57A LTR ERV1 0 403 1 392 265 86 101 chr15 56271557 56271698 -29424056 + L2 LINE L2 3175 3312 -1 309 293 80 37 chr15 56273471 56273659 -29422095 - MIR SINE MIR -65 197 2 514 277 154 5 chr15 56273846 56274041 -29421713 + MIR SINE MIR 29 252 -10 1773 200 22 8 chr15 56274094 56274454 -29421300 - MLT1A1 LTR MaLR 0 365 1 2299 102 0 13 chr15 56274726 56275030 -29420724 - AluSx SINE Alu -12 300 1 1662 207 65 3 chr15 56275317 56275670 -29420084 - L1PA16 LINE L1 -10 6156 5782 207 0 0 0 chr15 56276148 56276171 -29419583 + (A)n Simple_repeat Simple_repeat 1 23 0 231 204 41 0 chr15 56276288 56276337 -29419417 - MIR SINE MIR -58 150 100 188 315 0 34 chr15 56276810 56276899 -29418855 + MIR SINE MIR 107 192 -70 1850 167 20 13 chr15 56276904 56277245 -29418509 + AluJo SINE Alu 1 343 0 4573 183 119 34 chr15 56277618 56277902 -29417852 - L1MD3 LINE L1 0 8042 7784 1943 156 30 0 chr15 56277902 56278204 -29417550 + AluJb SINE Alu 1 311 -1 4573 183 119 34 chr15 56278204 56279080 -29416674 - L1MD3 LINE L1 -258 7784 6796 2193 118 0 0 chr15 56279168 56279465 -29416289 - AluSx SINE Alu -15 297 1 2288 84 0 7 chr15 56279624 56279920 -29415834 - AluY SINE Alu -17 294 1 2237 113 0 13 chr15 56280498 56280809 -29414945 + AluSx SINE Alu 2 308 -4 4874 83 14 5 chr15 56280809 56281474 -29414280 + L1PA13 LINE L1 5493 6163 0 6478 165 20 23 chr15 56281487 56282658 -29413096 + L1P LINE L1 11 1178 -4968 261 98 0 0 chr15 56282808 56282849 -29412905 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 742 155 17 0 chr15 56283066 56283182 -29412572 - FLAM_C SINE Alu -15 118 1 491 299 7 13 chr15 56283191 56283345 -29412409 - MIR SINE MIR -109 153 1 819 178 0 7 chr15 56283449 56283595 -29412159 + L1MB2 LINE L1 5994 6138 -33 779 183 36 7 chr15 56283601 56283736 -29412018 + MER2 DNA MER2_type 1 139 -206 1520 102 11 25 chr15 56283736 56284006 -29411748 + MER1B DNA MER1_type 1 113 -105 2009 123 0 3 chr15 56284110 56284394 -29411360 - AluSq SINE Alu -30 283 1 4323 172 39 13 chr15 56284446 56285733 -29410021 + L1MB4 LINE L1 4753 6066 -114 357 226 12 12 chr15 56286899 56286983 -29408771 - MER94 DNA DNA -50 84 1 385 200 297 24 chr15 56287212 56287377 -29408377 - MARNA DNA Mariner -361 225 16 1993 141 7 7 chr15 56287576 56287875 -29407879 + AluSx SINE Alu 3 301 -11 293 256 41 50 chr15 56287883 56288004 -29407750 + L1MEc LINE L1 1575 1694 -4702 2541 63 0 0 chr15 56288131 56288432 -29407322 - AluY SINE Alu -10 301 1 1606 94 13 4 chr15 56489002 56489235 -29206519 - AluY SINE Alu -76 235 1 1370 145 18 0 chr15 56489946 56490173 -29205581 - Tigger2 DNA MER2_type -5 2713 2483 2241 85 3 23 chr15 56490179 56490484 -29205270 + AluY SINE Alu 1 299 -12 735 240 3 59 chr15 56490488 56490775 -29204979 + AluJo SINE Alu 37 307 -5 213 39 0 0 chr15 56492653 56492679 -29203075 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1836 149 0 11 chr15 56492682 56492964 -29202790 - AluJb SINE Alu -31 281 3 15868 129 40 17 chr15 56493604 56496263 -29199491 + Tigger2 DNA MER2_type 1 2718 0 219 272 284 0 chr15 56496301 56496382 -29199372 + MER5A DNA MER1_type 85 188 -1 24 0 0 0 chr15 56496777 56496801 -29198953 + AT_rich Low_complexity Low_complexity 1 24 0 1955 131 24 3 chr15 56497046 56497383 -29198371 + L1MA5A LINE L1 5946 6289 -8 25 0 0 0 chr15 56497384 56497409 -29198345 + AT_rich Low_complexity Low_complexity 1 25 0 4909 177 60 18 chr15 56497444 56498341 -29197413 - Charlie1a DNA MER1_type -1574 1187 329 1908 156 0 4 chr15 56498341 56498617 -29197137 - AluJb SINE Alu -37 275 1 4909 177 60 18 chr15 56498617 56498648 -29197106 - Charlie1a DNA MER1_type -2432 329 301 180 0 0 0 chr15 56498648 56498668 -29197086 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4909 177 60 18 chr15 56498668 56498806 -29196948 - Charlie1a DNA MER1_type -2460 301 75 24 0 0 0 chr15 56498864 56498888 -29196866 + AT_rich Low_complexity Low_complexity 1 24 0 1926 123 17 33 chr15 56498888 56499247 -29196507 - L1MA7 LINE L1 -4 6287 5935 295 292 154 0 chr15 56499265 56499395 -29196359 + L2 LINE L2 2863 3012 -260 258 302 78 0 chr15 56499496 56499625 -29196129 - MIR SINE MIR -10 252 114 7634 30 1 0 chr15 56500238 56501858 -29193896 + L1PA3 LINE L1 4564 6184 0 1063 183 16 0 chr15 56501965 56502151 -29193603 + MER5A DNA MER1_type 1 189 0 2199 100 7 0 chr15 56502529 56502819 -29192935 - AluSq SINE Alu -21 292 1 256 314 34 0 chr15 56503488 56503589 -29192165 + MIR SINE MIR 31 136 -72 189 0 0 0 chr15 56504227 56504248 -29191506 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2172 125 10 0 chr15 56505063 56505366 -29190388 - AluSq SINE Alu -7 306 1 2176 91 17 7 chr15 56505366 56505662 -29190092 - AluSx SINE Alu -13 299 1 557 299 28 51 chr15 56505898 56506112 -29189642 - MIR SINE MIR -48 214 6 202 208 125 0 chr15 56506499 56506547 -29189207 - MIR SINE MIR 0 262 209 837 205 21 21 chr15 56506567 56506757 -29188997 - MER20 DNA MER1_type -21 198 9 640 288 41 6 chr15 56506758 56506928 -29188826 - MIR SINE MIR -81 181 6 474 276 60 15 chr15 56506932 56507064 -29188690 - MIR SINE MIR -116 146 9 629 267 76 12 chr15 56507064 56507236 -29188518 - MER5A DNA MER1_type 0 189 7 2597 66 0 0 chr15 56507903 56508235 -29187519 - L1PA6 LINE L1 0 6154 5823 252 0 0 0 chr15 56508403 56508431 -29187323 + (CA)n Simple_repeat Simple_repeat 1 28 0 1070 216 32 5 chr15 56508551 56508769 -29186985 - MER58A DNA MER1_type 0 224 1 663 185 9 0 chr15 56509283 56509391 -29186363 - FLAM_A SINE Alu -32 110 2 1246 269 108 12 chr15 56509755 56510235 -29185519 - L2 LINE L2 -613 2701 2176 466 237 45 13 chr15 56510294 56510450 -29185304 + L1MC5 LINE L1 7765 7925 -36 475 309 126 0 chr15 56510817 56511024 -29184730 - MIR SINE MIR -29 233 1 21 0 0 0 chr15 56511254 56511275 -29184479 + AT_rich Low_complexity Low_complexity 1 21 0 492 226 75 0 chr15 56511364 56511510 -29184244 - Charlie1 DNA MER1_type 0 2761 2605 1787 195 63 16 chr15 56511926 56512372 -29183382 + MLT1C LTR MaLR 1 467 0 3463 119 58 50 chr15 56512519 56512728 -29183026 - Tigger3b DNA MER2_type -1804 1225 1019 2190 110 57 28 chr15 56512728 56513082 -29182672 + THE1B LTR MaLR 1 364 0 11845 83 1 24 chr15 56513082 56513550 -29182204 + THE1B-int LTR MaLR 1 478 -1102 2238 121 0 0 chr15 56513550 56513855 -29181899 + AluSx SINE Alu 6 310 -2 11845 83 1 24 chr15 56513855 56515004 -29180750 + THE1B-int LTR MaLR 478 1580 0 2396 102 48 20 chr15 56515004 56515358 -29180396 + THE1B LTR MaLR 1 364 0 3463 119 58 50 chr15 56515358 56515743 -29180011 - Tigger3b DNA MER2_type -2010 1019 621 2025 135 10 3 chr15 56515743 56516039 -29179715 + AluSx SINE Alu 1 298 -14 3463 119 58 50 chr15 56516039 56516154 -29179600 - Tigger3b DNA MER2_type -2408 621 508 801 146 0 0 chr15 56516147 56516277 -29179477 + MLT1B LTR MaLR 43 172 -218 * 2981 121 53 2 chr15 56516308 56516795 -29178959 - Tigger3b DNA MER2_type -718 513 2 199 140 40 0 chr15 56516962 56517012 -29178742 + (TA)n Simple_repeat Simple_repeat 2 53 0 182 174 22 0 chr15 56517014 56517060 -29178694 + GA-rich Low_complexity Low_complexity 2 48 0 364 254 70 9 chr15 56517069 56517183 -29178571 + L2 LINE L2 3193 3313 0 2582 204 24 30 chr15 56517204 56517877 -29177877 + L1MB7 LINE L1 3441 4109 -2037 1298 166 126 29 chr15 56517879 56518156 -29177598 - AluSg1 SINE Alu 0 309 6 4392 193 54 16 chr15 56518160 56520159 -29175595 + L1MB7 LINE L1 4102 6169 -15 328 270 177 67 chr15 56520471 56521038 -29174716 + L2 LINE L2 2587 3230 -42 188 241 74 0 chr15 56521480 56521534 -29174220 + L2 LINE L2 3003 3060 -212 2065 125 3 3 chr15 56522325 56522620 -29173134 + AluSx SINE Alu 1 295 -17 269 286 238 0 chr15 56522758 56522884 -29172870 + L2 LINE L2 2620 2775 -539 320 273 0 0 chr15 56523035 56523101 -29172653 + L2 LINE L2 3202 3267 -5 211 261 45 57 chr15 56524545 56524633 -29171121 - L2 LINE L2 -2 3270 3184 914 198 57 0 chr15 56525102 56525294 -29170460 + MER3 DNA MER1_type 1 203 -6 1830 142 7 24 chr15 56525894 56526189 -29169565 + AluJo SINE Alu 1 290 -22 377 394 17 11 chr15 56526298 56526473 -29169281 - MIR SINE MIR -85 177 2 1882 167 3 3 chr15 56527014 56527308 -29168446 - AluJb SINE Alu -17 295 2 608 257 123 16 chr15 56527507 56527694 -29168060 + MIR SINE MIR 12 218 -44 22 0 0 0 chr15 56527752 56527774 -29167980 + AT_rich Low_complexity Low_complexity 1 22 0 42089 37 6 3 chr15 56527774 56533904 -29161850 - L1PA4 LINE L1 -3 6152 7 548 293 7 0 chr15 56534759 56534899 -29160855 - L3 LINE CR1 -3 1574 1434 388 337 212 22 chr15 56534959 56535360 -29160394 + L2 LINE L2 2501 2977 -337 2247 101 0 0 chr15 56537655 56537943 -29157811 + AluSc SINE Alu 1 288 -21 2330 93 17 0 chr15 56538950 56539251 -29156503 + AluSg SINE Alu 1 306 -4 2248 108 3 3 chr15 56539471 56539778 -29155976 + AluSx SINE Alu 1 307 -5 2010 148 7 13 chr15 56545204 56545508 -29150246 + AluJb SINE Alu 1 302 -10 574 314 13 7 chr15 56545508 56545661 -29150093 - L2 LINE L2 -476 2838 2685 1290 219 49 52 chr15 56545772 56546101 -29149653 + Cheshire DNA MER1_type 2 329 -2091 21 0 0 0 chr15 56546157 56546178 -29149576 + AT_rich Low_complexity Low_complexity 1 21 0 1032 148 64 10 chr15 56546178 56546380 -29149374 + Cheshire DNA MER1_type 2082 2294 -126 1576 190 61 100 chr15 56546396 56546566 -29149188 + L1ME1 LINE L1 5187 5362 -804 1814 172 0 10 chr15 56546566 56546869 -29148885 - AluJb SINE Alu -12 300 1 1576 190 61 100 chr15 56546869 56547353 -29148401 + L1ME1 LINE L1 5362 6083 -83 1857 122 0 19 chr15 56547353 56547615 -29148139 + AluSx SINE Alu 1 257 -55 1576 190 61 100 chr15 56547615 56547692 -29148062 + L1ME1 LINE L1 6083 6161 -5 236 308 84 28 chr15 56547698 56547979 -29147775 - L2 LINE L2 -610 2704 2348 837 248 93 31 chr15 56548162 56548582 -29147172 - L2 LINE L2 -1267 2047 1602 322 303 136 13 chr15 56548575 56548730 -29147024 - MIR3 SINE MIR 0 208 35 * 583 52 0 0 chr15 56549298 56549375 -29146379 + L1PA4 LINE L1 6079 6155 0 289 342 8 33 chr15 56551345 56551465 -29144289 + L2 LINE L2 2939 3055 -217 569 169 151 54 chr15 56551603 56551653 -29144101 - MIR SINE MIR -21 241 197 2333 91 0 16 chr15 56551653 56551961 -29143793 + AluSx SINE Alu 1 303 -9 569 169 151 54 chr15 56551961 56552076 -29143678 - MIR SINE MIR -65 197 60 195 100 0 0 chr15 56552076 56552106 -29143648 + (CATG)n Simple_repeat Simple_repeat 2 31 0 207 0 0 0 chr15 56552179 56552202 -29143552 + (CAG)n Simple_repeat Simple_repeat 1 23 0 326 286 48 24 chr15 56553941 56554067 -29141687 + MIR SINE MIR 131 259 -3 23 54 0 0 chr15 56555567 56555604 -29140150 + AT_rich Low_complexity Low_complexity 1 37 0 1702 123 0 0 chr15 56556314 56556541 -29139213 + AluSx SINE Alu 55 281 -31 516 16 0 0 chr15 56556542 56556603 -29139151 + (CTAAA)n Simple_repeat Simple_repeat 4 64 0 187 232 159 14 chr15 56556703 56556772 -29138982 + L2 LINE L2 2232 2310 -1004 4388 89 96 13 chr15 56558133 56558358 -29137396 - PABL_B LTR ERV1 0 667 462 2261 81 0 3 chr15 56558358 56558662 -29137092 - AluY SINE Alu 0 303 1 4388 89 96 13 chr15 56558662 56559051 -29136703 - PABL_B LTR ERV1 -205 462 1 201 39 0 0 chr15 56560795 56560821 -29134933 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 2187 108 7 0 chr15 56562103 56562391 -29133363 - AluSx SINE Alu -22 290 1 366 23 0 0 chr15 56564654 56564697 -29131057 + (CA)n Simple_repeat Simple_repeat 2 44 0 212 292 69 0 chr15 56567489 56567561 -29128193 - MIR SINE MIR -29 233 157 456 35 0 0 chr15 56568684 56568742 -29127012 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 443 208 149 58 chr15 56569235 56569389 -29126365 + MIR SINE MIR 25 192 -70 791 350 106 15 chr15 56572218 56572758 -29122996 + L2 LINE L2 2197 2785 -529 21 57 0 0 chr15 56573030 56573065 -29122689 + AT_rich Low_complexity Low_complexity 1 35 0 1142 112 31 0 chr15 56573065 56573226 -29122528 - L1PA16 LINE L1 -5 6161 5996 223 263 35 0 chr15 56573260 56573317 -29122437 + L2 LINE L2 3201 3259 -13 197 257 54 27 chr15 56574441 56574515 -29121239 - MIR SINE MIR -135 127 52 186 250 206 0 chr15 56575469 56575561 -29120193 + MIR SINE MIR 33 143 -65 272 403 158 32 chr15 56575954 56576932 -29118822 + L2 LINE L2 1757 2858 -456 307 279 14 100 chr15 56577108 56577248 -29118506 + L2 LINE L2 3179 3306 -7 293 358 42 0 chr15 56577227 56577347 -29118407 - L2 LINE L2 -10 3262 3138 * 604 279 38 72 chr15 56577518 56577572 -29118182 - MIR SINE MIR -3 259 205 294 29 0 0 chr15 56577572 56577607 -29118147 + (TG)n Simple_repeat Simple_repeat 2 36 0 604 279 38 72 chr15 56577607 56577814 -29117940 - MIR SINE MIR -57 205 7 232 300 161 31 chr15 56577817 56577947 -29117807 - MER5A DNA MER1_type -5 184 38 328 335 30 0 chr15 56578298 56578465 -29117289 - L1ME4a LINE L1 -225 5896 5725 217 283 147 13 chr15 56578711 56578872 -29116882 - MIR SINE MIR -50 212 28 1255 204 37 112 chr15 56579035 56579437 -29116317 + MLT1A2 LTR MaLR 1 372 -2 3376 205 151 102 chr15 56579437 56579891 -29115863 + MLT1A2-int LTR MaLR 3 433 -938 2168 127 3 0 chr15 56579891 56580190 -29115564 + AluSx SINE Alu 1 300 -12 3376 205 151 102 chr15 56580190 56581025 -29114729 + MLT1A2-int LTR MaLR 433 1356 -15 1221 225 38 91 chr15 56581046 56581441 -29114313 + MLT1A2 LTR MaLR 1 374 0 1925 123 20 33 chr15 56581536 56581838 -29113916 - AluSx SINE Alu -14 298 1 290 304 13 13 chr15 56583040 56583119 -29112635 - MIR SINE MIR -176 86 8 545 263 119 51 chr15 56583245 56583306 -29112448 + MIR SINE MIR 7 62 -200 2245 86 3 7 chr15 56583306 56583617 -29112137 + AluSc SINE Alu 1 309 0 545 263 119 51 chr15 56583617 56583791 -29111963 + MIR SINE MIR 62 258 -4 930 172 13 6 chr15 56583890 56584047 -29111707 + AluJo SINE Alu 3 160 -152 349 95 5 0 chr15 56584047 56584105 -29111649 + AluJ/FRAM SINE Alu 217 257 -45 1872 152 0 14 chr15 56584181 56584477 -29111277 - AluJb SINE Alu -20 292 1 2373 96 0 0 chr15 56584505 56584806 -29110948 + AluSq SINE Alu 1 301 -12 211 290 81 0 chr15 56584945 56585007 -29110747 + L2 LINE L2 3247 3313 0 1125 145 88 9 chr15 56586794 56587021 -29108733 - Tigger2 DNA MER2_type -207 2511 2267 447 152 0 0 chr15 56587005 56587071 -29108683 - Tigger2 DNA MER2_type -2649 69 4 * 2444 207 46 3 chr15 56587215 56588215 -29107539 + L1MC2 LINE L1 4672 5708 -625 1934 103 8 8 chr15 56588402 56588665 -29107089 + AluSg SINE Alu 27 289 -21 23 54 0 0 chr15 56589022 56589059 -29106695 + AT_rich Low_complexity Low_complexity 1 37 0 8459 9 0 0 chr15 56589579 56590591 -29105163 - L1PA2 LINE L1 0 6155 5143 3528 34 0 0 chr15 56590591 56591009 -29104745 + L1PA2 LINE L1 4715 5132 -1014 2372 126 61 50 chr15 56591140 56591602 -29104152 + L1MC2 LINE L1 5694 6160 -184 351 289 97 66 chr15 56591880 56592108 -29103646 - MIR SINE MIR -27 235 1 21 0 0 0 chr15 56592617 56592638 -29103116 + AT_rich Low_complexity Low_complexity 1 21 0 232 302 47 54 chr15 56593298 56593447 -29102307 + MIR SINE MIR 43 190 -72 483 110 82 0 chr15 56593477 56593550 -29102204 + MLT1D LTR MaLR 1 79 -426 * 1022 184 11 0 chr15 56593546 56593720 -29102034 + MLT1D LTR MaLR 330 505 0 488 271 56 21 chr15 56593720 56593864 -29101890 + MIR SINE MIR 48 196 -66 1957 129 0 39 chr15 56594350 56594661 -29101093 + AluSx SINE Alu 1 299 -13 869 230 42 9 chr15 56594772 56594985 -29100769 + MER58A DNA MER1_type 2 221 -3 2349 95 3 0 chr15 56595321 56595626 -29100128 + AluSq SINE Alu 1 306 -7 341 281 54 67 chr15 56595834 56596032 -29099722 - MIR SINE MIR -44 218 19 2084 131 3 0 chr15 56597163 56597468 -29098286 + AluSg SINE Alu 1 306 -4 2529 222 54 13 chr15 56597522 56598016 -29097738 - L1ME1 LINE L1 -2 6183 5711 1707 155 145 36 chr15 56598016 56598088 -29097666 - MSTA LTR MaLR 0 428 365 2439 70 0 25 chr15 56598088 56598402 -29097352 + AluY SINE Alu 1 306 -5 1707 155 145 36 chr15 56598402 56598715 -29097039 - MSTA LTR MaLR -63 365 1 2529 222 54 13 chr15 56598715 56599136 -29096618 - L1ME1 LINE L1 -474 5711 5140 1623 132 125 22 chr15 56599136 56599447 -29096307 + MER2 DNA MER2_type 2 344 0 2529 222 54 13 chr15 56599447 56599487 -29096267 - L1ME1 LINE L1 -1045 5140 5103 3435 208 69 36 chr15 56599553 56600010 -29095744 - L1ME1 LINE L1 -1053 5093 4652 8018 113 35 24 chr15 56600010 56600705 -29095049 + HSMAR2 DNA Mariner 2 719 -583 1634 186 41 0 chr15 56600705 56601000 -29094754 + AluJb SINE Alu 1 307 -5 8018 113 35 24 chr15 56601000 56601590 -29094164 + HSMAR2 DNA Mariner 719 1301 -1 3435 208 69 36 chr15 56601590 56602324 -29093430 - L1ME1 LINE L1 -1494 4652 3690 1035 207 0 0 chr15 56602324 56602498 -29093256 - FAM SINE Alu 0 175 2 319 371 20 30 chr15 56602821 56603018 -29092736 - L2 LINE L2 -575 2739 2545 403 280 186 51 chr15 56604400 56604754 -29091000 + L1ME4a LINE L1 5599 6000 -121 419 258 5 113 chr15 56606125 56606311 -29089443 - MIR SINE MIR -16 246 81 509 213 21 0 chr15 56606687 56606781 -29088973 + MER5A DNA MER1_type 9 104 -85 21 0 0 0 chr15 56606817 56606838 -29088916 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr15 56607639 56607662 -29088092 + (T)n Simple_repeat Simple_repeat 1 23 0 215 371 117 21 chr15 56608569 56608860 -29086894 + L2 LINE L2 2491 2809 -505 441 295 108 16 chr15 56608878 56609007 -29086747 - MIR SINE MIR -121 141 1 279 0 0 0 chr15 56609382 56609413 -29086341 + (TG)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr15 56609419 56609450 -29086304 + (TA)n Simple_repeat Simple_repeat 1 31 0 434 101 14 0 chr15 56609797 56609866 -29085888 + (TA)n Simple_repeat Simple_repeat 2 71 0 454 264 114 64 chr15 56610502 56610722 -29085032 - MIR SINE MIR -3 259 29 460 294 68 7 chr15 56610745 56610909 -29084845 - MER5A DNA MER1_type 0 189 6 1678 193 7 0 chr15 56611468 56611769 -29083985 + AluJo SINE Alu 1 303 -9 890 44 0 0 chr15 56611869 56611983 -29083771 - L1PA4 LINE L1 -1 6154 6041 232 367 9 18 chr15 56612210 56612319 -29083435 - MIR3 SINE MIR -17 191 84 883 202 122 8 chr15 56612386 56612633 -29083121 + ORSL DNA AcHobo 1 275 0 2200 120 3 0 chr15 56613389 56613697 -29082057 - AluSq SINE Alu -2 311 3 2233 102 3 0 chr15 56613958 56614251 -29081503 - AluSx SINE Alu -18 294 1 665 190 5 3 chr15 56614368 56614585 -29081169 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr15 56614585 56614608 -29081146 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 189 0 0 0 chr15 56615698 56615719 -29080035 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 181 318 0 15 chr15 56615768 56615834 -29079920 + MER5A DNA MER1_type 7 71 -118 3119 301 82 18 chr15 56615836 56616067 -29079687 + L2 LINE L2 912 1127 -2187 216 0 0 0 chr15 56616067 56616091 -29079663 + (CA)n Simple_repeat Simple_repeat 2 25 0 3119 301 82 18 chr15 56616091 56616491 -29079263 + L2 LINE L2 1127 1500 -1814 2109 124 0 7 chr15 56616491 56616798 -29078956 - AluSq SINE Alu -6 307 3 3119 301 82 18 chr15 56616798 56617489 -29078265 + L2 LINE L2 1500 2320 -994 1584 196 0 17 chr15 56617625 56617916 -29077838 - AluJo SINE Alu -22 290 5 411 276 83 23 chr15 56617925 56618142 -29077612 - L1M4 LINE L1 -2766 3380 3151 443 267 18 12 chr15 56618211 56618376 -29077378 - HAL1b LINE L1 0 1348 1183 30 0 0 0 chr15 56618416 56618446 -29077308 + AT_rich Low_complexity Low_complexity 1 30 0 1019 174 0 55 chr15 56618452 56618653 -29077101 - AluJo SINE Alu -75 237 48 1450 140 31 42 chr15 56618655 56618941 -29076813 + THE1C LTR MaLR 93 375 0 9878 113 54 9 chr15 56618942 56620453 -29075301 + THE1C-int LTR MaLR 2 1580 0 2195 116 9 24 chr15 56620453 56620789 -29074965 + THE1C LTR MaLR 1 331 -44 394 253 79 15 chr15 56620813 56621015 -29074739 - HAL1b LINE L1 -190 1158 944 301 281 55 7 chr15 56621016 56621162 -29074592 - L1M4 LINE L1 -3098 3048 2896 260 299 0 21 chr15 56621938 56622035 -29073719 - HAL1 LINE L1 -897 1610 1516 413 353 5 27 chr15 56622160 56622347 -29073407 - HAL1 LINE L1 -1487 1020 838 455 289 171 11 chr15 56623112 56623335 -29072419 + MIR SINE MIR 1 259 -3 1483 149 100 11 chr15 56624091 56624360 -29071394 + AluJb SINE Alu 1 293 -19 369 213 6 6 chr15 56624555 56624652 -29071102 + L1ME LINE L1 5339 5438 -726 * 2944 213 49 71 chr15 56624651 56625708 -29070046 + L1M4 LINE L1 3584 4620 -1526 381 293 57 50 chr15 56625696 56625979 -29069775 - L1ME4a LINE L1 -232 5889 5605 * 2229 113 7 0 chr15 56627441 56627751 -29068003 + AluSp SINE Alu 1 312 -1 1873 139 63 3 chr15 56628338 56628625 -29067129 - AluSx SINE Alu -8 304 1 809 221 0 29 chr15 56628960 56629132 -29066622 + AluJb SINE Alu 133 299 -13 837 251 28 42 chr15 56629180 56629467 -29066287 + AluSx SINE Alu 1 283 -19 2407 82 0 0 chr15 56629645 56629938 -29065816 - AluSc SINE Alu -16 293 1 287 180 16 0 chr15 56629943 56630004 -29065750 - L1M4 LINE L1 -1538 4608 4547 788 191 66 7 chr15 56630005 56630157 -29065597 + AluJb SINE Alu 133 293 -19 1433 231 74 45 chr15 56630163 56630371 -29065383 - L1M4 LINE L1 -1600 4546 4345 1961 127 7 3 chr15 56630371 56630655 -29065099 + AluSg SINE Alu 3 287 -23 1433 231 74 45 chr15 56630655 56631039 -29064715 - L1M4 LINE L1 -1801 4345 3937 1419 143 60 49 chr15 56631111 56631377 -29064377 - AluSx SINE Alu -4 308 40 1013 238 97 0 chr15 56631378 56631677 -29064077 - L1M4 LINE L1 -2265 3881 3554 810 148 0 22 chr15 56631692 56631827 -29063927 - FLAM_C SINE Alu -1 132 1 243 301 154 19 chr15 56631853 56632009 -29063745 + MIR SINE MIR 12 188 -74 1902 153 16 22 chr15 56632030 56632350 -29063404 + MLT1A1 LTR MaLR 11 328 -37 243 0 0 0 chr15 56632430 56632457 -29063297 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 1781 134 21 11 chr15 56632468 56632752 -29063002 - AluSx SINE Alu -25 287 1 684 109 0 0 chr15 56633362 56633454 -29062300 - AluS SINE Alu -221 92 1 21 0 0 0 chr15 56633601 56633622 -29062132 + AT_rich Low_complexity Low_complexity 1 21 0 795 97 0 0 chr15 56633775 56633889 -29061865 + (TA)n Simple_repeat Simple_repeat 2 115 0 2087 86 28 41 chr15 56633889 56634052 -29061702 - AluSx SINE Alu -22 290 131 2254 113 0 3 chr15 56634052 56634363 -29061391 - AluY SINE Alu -1 310 1 2087 86 28 41 chr15 56634363 56634489 -29061265 - AluSx SINE Alu -181 131 5 1963 186 70 34 chr15 56635266 56635735 -29060019 + MER66B LTR ERV1 1 486 0 636 183 22 66 chr15 56636792 56636929 -29058825 - MER2 DNA MER2_type -214 131 1 1011 300 52 41 chr15 56636951 56637455 -29058299 - L1MEc LINE L1 -4452 1944 1426 2000 129 20 3 chr15 56637455 56637750 -29058004 - AluSq SINE Alu -13 300 1 1011 300 52 41 chr15 56637750 56638031 -29057723 - L1MEc LINE L1 -4970 1426 1150 1884 172 0 7 chr15 56638063 56638360 -29057394 - AluJb SINE Alu -14 298 4 571 312 131 24 chr15 56638421 56638758 -29056996 - L2 LINE L2 -32 3281 2909 1006 234 35 0 chr15 56640125 56640351 -29055403 + MER58B DNA MER1_type 2 235 -106 10769 33 5 0 chr15 56640359 56642677 -29053077 - L1PA3 LINE L1 -3 6152 3826 488 272 9 0 chr15 56642677 56642791 -29052963 + MER58B DNA MER1_type 221 335 -6 24 0 0 0 chr15 56642925 56642949 -29052805 + AT_rich Low_complexity Low_complexity 1 24 0 1456 301 63 40 chr15 56643235 56644288 -29051466 + L1MEc LINE L1 37 1113 -5283 746 75 0 0 chr15 56644289 56644382 -29051372 + L1PA3 LINE L1 4 96 -6050 38341 38 5 1 chr15 56644382 56649911 -29045843 + L1PA3 LINE L1 623 6176 0 1510 237 52 3 chr15 56649969 56650315 -29045439 + L1MDa LINE L1 812 1174 -5366 1147 161 5 0 chr15 56650318 56650517 -29045237 + L1PBa LINE L1 1 200 -6663 9988 120 56 4 chr15 56650519 56651816 -29043938 + L1PBa LINE L1 636 1864 -4998 2110 136 3 0 chr15 56651816 56652117 -29043637 + AluSx SINE Alu 1 302 -10 9988 120 56 4 chr15 56652117 56653443 -29042311 + L1PBa LINE L1 1864 3538 -3324 2280 51 31 0 chr15 56653444 56653737 -29042017 - L1P LINE L1 -3145 3001 2700 * 4502 17 2 0 chr15 56653723 56654242 -29041512 + L1P LINE L1 3961 4480 -1666 1863 44 0 0 chr15 56654254 56654480 -29041274 - L1P LINE L1 -1450 4696 4471 * 6172 43 1 1 chr15 56654477 56655414 -29040340 + L1PA5 LINE L1 5065 6001 -153 27 0 0 0 chr15 56656208 56656235 -29039519 + AT_rich Low_complexity Low_complexity 1 27 0 1347 245 118 2 chr15 56656258 56656690 -29039064 - L1MC4 LINE L1 -143 7899 7418 1201 220 38 17 chr15 56656757 56657048 -29038706 - L1MC4 LINE L1 -937 7105 6809 9173 184 59 29 chr15 56657445 56660117 -29035637 - L1MC3 LINE L1 -591 7194 4431 2114 155 5 8 chr15 56660270 56660637 -29035117 + L1MC1 LINE L1 5968 6333 0 833 133 105 0 chr15 56660639 56660820 -29034934 + L1ME1 LINE L1 5729 5928 -236 1904 110 19 0 chr15 56661275 56661538 -29034216 - AluSx SINE Alu -12 300 33 339 25 0 0 chr15 56661539 56661579 -29034175 + (TG)n Simple_repeat Simple_repeat 2 41 0 578 283 56 39 chr15 56662292 56662501 -29033253 + L1ME1 LINE L1 5911 6126 -40 1941 133 3 14 chr15 56662501 56662795 -29032959 + AluSq SINE Alu 1 291 -22 578 283 56 39 chr15 56662795 56662818 -29032936 + L1ME1 LINE L1 6126 6147 -19 252 276 143 29 chr15 56662901 56663006 -29032748 + MIR3 SINE MIR 50 166 -42 1951 114 17 43 chr15 56663319 56663618 -29032136 + AluSx SINE Alu 1 291 -21 208 211 0 0 chr15 56664582 56664620 -29031134 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 294 22 33 chr15 56666508 56666600 -29029154 + MIR SINE MIR 120 210 -52 181 315 19 0 chr15 56666640 56666694 -29029060 + MIR3 SINE MIR 117 171 -37 265 276 105 53 chr15 56666774 56666926 -29028828 - MIR3 SINE MIR -27 181 22 1966 124 21 7 chr15 56667171 56667296 -29028458 + AluSc SINE Alu 1 123 -186 369 0 0 0 chr15 56667296 56667337 -29028417 + (CA)n Simple_repeat Simple_repeat 2 42 0 1966 124 21 7 chr15 56667337 56667502 -29028252 + AluSc SINE Alu 123 295 -14 514 222 216 6 chr15 56667554 56667725 -29028029 + MIR SINE MIR 50 256 -6 277 325 54 22 chr15 56667910 56668044 -29027710 + MIR SINE MIR 1 145 -63 3750 77 19 19 chr15 56668104 56668674 -29027080 - L1P LINE L1 -2836 3310 2741 1040 16 0 0 chr15 56669301 56669422 -29026332 + L1PA5 LINE L1 6033 6153 -1 11180 198 15 25 chr15 56669422 56672668 -29023086 + L1PA10 LINE L1 2814 6014 -154 5006 83 4 4 chr15 56672120 56672803 -29022951 + L1PB1 LINE L1 5469 6151 0 * 331 190 17 0 chr15 56672844 56672902 -29022852 + Tigger2 DNA MER2_type 1 59 -2659 2046 113 27 10 chr15 56672915 56673240 -29022514 + AluSg SINE Alu 1 310 0 4169 172 72 79 chr15 56673268 56674580 -29021174 + L1MDa LINE L1 1158 2460 -4080 1647 162 88 20 chr15 56674577 56674929 -29020825 + L1MD2 LINE L1 5769 6144 -215 * 681 193 6 43 chr15 56674930 56675091 -29020663 + L1MD2 LINE L1 6195 6349 -10 568 329 154 55 chr15 56675865 56676626 -29019128 + L2 LINE L2 2067 2902 -412 2210 66 49 0 chr15 56676984 56677270 -29018484 + AluY SINE Alu 1 300 -11 2171 92 20 3 chr15 56677879 56678171 -29017583 + AluSx SINE Alu 3 299 -13 2097 123 3 7 chr15 56678300 56678458 -29017296 - AluSx SINE Alu -20 292 134 1992 127 25 0 chr15 56678458 56678742 -29017012 - AluSx SINE Alu -21 291 1 2097 123 3 7 chr15 56678742 56678876 -29016878 - AluSx SINE Alu -178 134 1 1035 153 60 56 chr15 56678878 56679093 -29016661 - AluJb SINE Alu -12 300 85 2469 67 0 0 chr15 56680019 56680318 -29015436 + AluY SINE Alu 1 299 -12 2912 218 11 35 chr15 56680439 56681103 -29014651 + MER82 DNA MER2_type 5 652 -1 201 273 0 0 chr15 56681103 56681158 -29014596 + (TA)n Simple_repeat Simple_repeat 1 55 0 307 375 127 8 chr15 56681676 56681935 -29013819 + L2 LINE L2 2807 3096 -176 311 244 76 17 chr15 56682171 56682290 -29013464 - MLT1L LTR MaLR -56 559 434 34 42 0 0 chr15 56682630 56682678 -29013076 + AT_rich Low_complexity Low_complexity 1 48 0 207 319 109 17 chr15 56682807 56682926 -29012828 + MIR SINE MIR 92 221 -41 233 211 28 0 chr15 56684575 56684646 -29011108 + L1MA4 LINE L1 6226 6298 -2 2233 106 0 6 chr15 56684655 56684966 -29010788 + AluSx SINE Alu 3 311 -1 1243 86 6 6 chr15 56685636 56685799 -29009955 - AluY SINE Alu -148 163 1 187 327 0 0 chr15 56685907 56685962 -29009792 + MIR SINE MIR 96 150 -112 1184 179 20 5 chr15 56686001 56686202 -29009552 + AluJb SINE Alu 86 289 -23 513 147 0 0 chr15 56686202 56686297 -29009457 + (GGGA)n Simple_repeat Simple_repeat 2 96 0 1175 199 179 3 chr15 56686720 56687011 -29008743 + MER2 DNA MER2_type 2 343 -1 272 152 0 0 chr15 56687012 56687058 -29008696 + MADE1 DNA Mariner 1 46 -34 22 0 0 0 chr15 56688150 56688172 -29007582 + AT_rich Low_complexity Low_complexity 1 22 0 320 309 43 0 chr15 56688241 56688335 -29007419 + MIR3 SINE MIR 58 155 -53 292 301 90 45 chr15 56689278 56689434 -29006320 + MIR SINE MIR 99 261 -1 376 318 219 0 chr15 56690934 56691126 -29004628 + L3 LINE CR1 1145 1378 -199 390 337 205 30 chr15 56691866 56692237 -29003517 - L2 LINE L2 -341 2973 2538 236 366 109 37 chr15 56692424 56692447 -29003307 - L2 LINE L2 -358 2956 2936 2044 116 12 38 chr15 56692447 56692766 -29002988 + AluSx SINE Alu 1 311 -1 236 366 109 37 chr15 56692766 56693283 -29002471 - L2 LINE L2 -378 2936 2377 379 296 90 56 chr15 56693563 56693918 -29001836 - MLT1J LTR MaLR -22 489 123 1747 190 102 24 chr15 56694087 56694509 -29001245 + L1MC3 LINE L1 6716 7170 -615 1247 88 6 0 chr15 56694513 56694695 -29001059 - AluSp SINE Alu 0 307 125 555 118 0 0 chr15 56694695 56694780 -29000974 + (TG)n Simple_repeat Simple_repeat 1 85 0 198 91 0 0 chr15 56694780 56694813 -29000941 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 970 90 0 0 chr15 56694813 56694935 -29000819 - AluSp SINE Alu -191 122 1 1292 122 16 0 chr15 56694937 56695126 -29000628 + L1MC3 LINE L1 7162 7353 -432 2222 112 0 3 chr15 56695426 56695721 -29000033 - AluSg SINE Alu -16 294 1 1012 135 65 11 chr15 56695930 56696115 -28999639 + L1PA16 LINE L1 5963 6157 -9 203 53 0 53 chr15 56696672 56696710 -28999044 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 2010 142 62 31 chr15 56696744 56697166 -28998588 + L1MC3 LINE L1 7351 7785 0 231 285 204 0 chr15 56697297 56697434 -28998320 - L1ME4a LINE L1 -22 6099 5935 251 252 243 36 chr15 56697643 56697754 -28998000 + L2 LINE L2 3180 3313 0 287 233 134 47 chr15 56697808 56697849 -28997905 + L1ME4a LINE L1 5847 5883 -238 2124 123 0 10 chr15 56697849 56698149 -28997605 + AluSx SINE Alu 1 297 -15 287 233 134 47 chr15 56698149 56698360 -28997394 + L1ME4a LINE L1 5883 6121 0 2169 216 25 20 chr15 56698908 56699418 -28996336 + L1MD2 LINE L1 5825 6337 -22 331 273 94 16 chr15 56699547 56699675 -28996079 + L3 LINE CR1 1368 1505 -72 51 65 0 0 chr15 56699675 56699768 -28995986 + AT_rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr15 56700721 56700742 -28995012 + AT_rich Low_complexity Low_complexity 1 21 0 291 363 123 7 chr15 56701330 56701476 -28994278 + L2 LINE L2 3101 3263 -9 7309 38 8 2 chr15 56701718 56702950 -28992804 - L1PA4 LINE L1 -5 6150 4915 17852 29 1 2 chr15 56702950 56705108 -28990646 + L1PA4 LINE L1 2755 4911 -1235 322 289 154 0 chr15 56705127 56705231 -28990523 + L2 LINE L2 3153 3272 0 1864 128 42 10 chr15 56705250 56705538 -28990216 + AluSx SINE Alu 2 298 -14 2624 140 31 0 chr15 56705565 56705980 -28989774 - MSTA LTR MaLR 0 428 1 1503 181 41 0 chr15 56706190 56706519 -28989235 + AluJo SINE Alu 1 340 0 246 230 161 0 chr15 56709233 56709320 -28986434 + MIR SINE MIR 118 218 -44 203 286 0 0 chr15 56709587 56709629 -28986125 - L2 LINE L2 -16 3297 3256 194 345 150 0 chr15 56709665 56709778 -28985976 - MIR SINE MIR -129 133 4 25 51 0 0 chr15 56711056 56711095 -28984659 + AT_rich Low_complexity Low_complexity 1 39 0 1028 255 121 44 chr15 56711312 56712031 -28983723 + L2 LINE L2 2534 3310 -3 2092 139 0 0 chr15 56712179 56712481 -28983273 - AluSx SINE Alu -8 304 3 374 226 44 69 chr15 56712482 56712641 -28983113 - L1ME LINE L1 -356 5765 5611 2166 96 4 4 chr15 56712657 56712968 -28982786 - AluSg SINE Alu 0 312 2 963 87 16 0 chr15 56713008 56713134 -28982620 + AluSq/x SINE Alu 1 128 -184 389 129 0 0 chr15 56713134 56713196 -28982558 + Alu SINE Alu 239 300 -1 2284 93 0 3 chr15 56713371 56713671 -28982083 + AluY SINE Alu 1 299 -12 227 305 75 29 chr15 56713912 56714086 -28981668 - L1ME LINE L1 -675 5446 5265 225 0 0 0 chr15 56714196 56714221 -28981533 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 698 160 0 0 chr15 56714227 56714333 -28981421 - FLAM_C SINE Alu -32 111 6 233 284 101 9 chr15 56715013 56715122 -28980632 - L1ME LINE L1 -1541 4605 4487 1450 181 10 45 chr15 56716552 56716844 -28978910 - AluJo SINE Alu -30 282 1 328 315 127 79 chr15 56717609 56718127 -28977627 + L1MC4a LINE L1 5524 6066 -1742 31 0 0 0 chr15 56719685 56719716 -28976038 + AT_rich Low_complexity Low_complexity 1 31 0 1389 177 39 8 chr15 56720169 56720423 -28975331 - AluJb SINE Alu -15 297 36 24 0 0 0 chr15 56720499 56720523 -28975231 + AT_rich Low_complexity Low_complexity 1 24 0 4171 190 55 21 chr15 56720559 56721740 -28974014 + L1MC2 LINE L1 4983 6203 -141 629 263 43 60 chr15 56721772 56722004 -28973750 - MER21B LTR ERV1 -150 713 486 709 158 8 8 chr15 56722008 56722128 -28973626 - FRAM SINE Alu -15 161 42 922 266 47 68 chr15 56722150 56722274 -28973480 - MER21B LTR ERV1 -428 435 310 2142 105 20 10 chr15 56722274 56722570 -28973184 + AluSx SINE Alu 1 299 -13 922 266 47 68 chr15 56722570 56722828 -28972926 - MER21B LTR ERV1 -553 310 61 437 182 91 8 chr15 56722870 56723002 -28972752 + L1MC3 LINE L1 7637 7779 -6 227 77 51 0 chr15 56722982 56723021 -28972733 - L1MC2 LINE L1 -6 6338 6298 * 24 32 0 0 chr15 56723025 56723056 -28972698 + AT_rich Low_complexity Low_complexity 1 31 0 6094 175 47 26 chr15 56723230 56723459 -28972295 - L1MB2 LINE L1 -21 6150 5927 1972 152 3 10 chr15 56723459 56723762 -28971992 - AluJo SINE Alu -11 301 1 6094 175 47 26 chr15 56723762 56724536 -28971218 - L1MB2 LINE L1 -244 5927 5171 2099 126 7 0 chr15 56724536 56724838 -28970916 - AluSx SINE Alu -8 304 1 6094 175 47 26 chr15 56724838 56725150 -28970604 - L1MB2 LINE L1 -1000 5171 4867 2381 77 0 3 chr15 56725150 56725447 -28970307 - AluY SINE Alu -15 296 1 6094 175 47 26 chr15 56725447 56726373 -28969381 - L1MB2 LINE L1 -1304 4867 3872 1192 136 9 5 chr15 56726725 56726938 -28968816 + L1MA4 LINE L1 6078 6291 -9 937 262 124 39 chr15 56727815 56728257 -28967497 - L2 LINE L2 0 3313 2834 262 269 163 35 chr15 56729260 56729401 -28966353 + MIR SINE MIR 33 191 -71 24 32 0 0 chr15 56729483 56729514 -28966240 + AT_rich Low_complexity Low_complexity 1 31 0 245 357 98 9 chr15 56729564 56729676 -28966078 - MIR3 SINE MIR -53 155 34 198 267 0 0 chr15 56729772 56729817 -28965937 - MIR SINE MIR -113 95 51 686 179 0 0 chr15 56729876 56729988 -28965766 - FLAM_C SINE Alu -24 119 8 2473 67 0 0 chr15 56730095 56730392 -28965362 - AluY SINE Alu -14 297 1 379 311 84 82 chr15 56732013 56732443 -28963311 - L2 LINE L2 -5 3267 2813 2288 82 108 6 chr15 56732443 56732784 -28962970 + MER51B LTR ERV1 1 376 -1 379 311 84 82 chr15 56732784 56732876 -28962878 - L2 LINE L2 -459 2813 2723 1556 155 65 25 chr15 56732992 56733269 -28962485 + AluJo SINE Alu 1 288 -24 369 325 52 31 chr15 56733309 56733556 -28962198 + MER115 DNA AcHobo 68 356 -337 35 78 0 0 chr15 56733562 56733639 -28962115 + AT_rich Low_complexity Low_complexity 1 77 0 418 255 19 19 chr15 56734270 56734376 -28961378 + MLT1H1 LTR MaLR 71 176 -379 291 291 8 26 chr15 56734422 56734539 -28961215 + MLT1-int LTR MaLR 1 90 -1281 407 323 21 5 chr15 56734583 56734769 -28960985 + MLT1-int LTR MaLR 348 536 -835 2491 60 0 0 chr15 56735811 56736109 -28959645 + AluY SINE Alu 1 298 -13 652 242 14 43 chr15 56737130 56737341 -28958413 + L1ME2 LINE L1 5958 6162 -2 709 281 14 31 chr15 56737352 56737644 -28958110 + L1ME LINE L1 5428 5714 -456 1501 197 3 41 chr15 56738038 56738319 -28957435 + AluJo SINE Alu 1 270 -42 1951 135 7 14 chr15 56738319 56738615 -28957139 - AluSx SINE Alu -6 306 13 1501 197 3 41 chr15 56738615 56738648 -28957106 + AluJo SINE Alu 270 303 -9 236 278 31 31 chr15 56739106 56739203 -28956551 - L1MC4a LINE L1 -979 6829 6733 604 294 76 49 chr15 56739212 56739644 -28956110 + L2 LINE L2 1605 2048 -1266 258 276 48 29 chr15 56739633 56739738 -28956016 - L2 LINE L2 -42 3271 3165 * 426 259 0 35 chr15 56739937 56740053 -28955701 + MIR SINE MIR 141 252 -10 3516 213 120 13 chr15 56740058 56740209 -28955545 + L1MB8 LINE L1 3936 4069 -2077 2044 141 0 7 chr15 56740209 56740507 -28955247 + AluJb SINE Alu 1 296 -16 3516 213 120 13 chr15 56740507 56741545 -28954209 + L1MB8 LINE L1 4069 5272 -874 241 192 39 13 chr15 56741545 56741555 -28954199 + (TA)n Simple_repeat Simple_repeat 1 9 -71 1252 207 13 8 chr15 56741555 56741792 -28953962 - MER8 DNA MER2_type -1 238 1 241 192 39 13 chr15 56741792 56741859 -28953895 + (TA)n Simple_repeat Simple_repeat 9 80 0 1703 168 57 13 chr15 56741907 56742295 -28953459 + L1MA5A LINE L1 4960 5364 -782 1252 164 22 9 chr15 56742296 56742521 -28953233 + AluJo SINE Alu 84 311 -1 4459 112 91 64 chr15 56742521 56743411 -28952343 + L1MA5A LINE L1 5384 6297 0 2261 154 20 35 chr15 56743419 56743872 -28951882 + L1MB8 LINE L1 5353 5798 -386 183 42 0 0 chr15 56743905 56743929 -28951825 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2116 118 0 0 chr15 56743929 56744209 -28951545 - AluSx SINE Alu -32 280 1 1780 223 61 17 chr15 56744211 56744708 -28951046 + MER76 LTR ERV 38 592 -96 1602 173 80 30 chr15 56744741 56744971 -28950783 + L1MB8 LINE L1 5789 6045 -133 2046 118 17 0 chr15 56744971 56745259 -28950495 + AluSx SINE Alu 1 293 -19 1602 173 80 30 chr15 56745259 56745393 -28950361 + L1MB8 LINE L1 6045 6171 -7 21 0 0 0 chr15 56746168 56746189 -28949565 + AT_rich Low_complexity Low_complexity 1 21 0 2193 117 0 7 chr15 56746509 56746817 -28948937 + AluSx SINE Alu 1 306 -6 900 285 111 14 chr15 56747165 56747509 -28948245 + MLT1I LTR MaLR 33 409 0 185 136 0 23 chr15 56747513 56747557 -28948197 + (TATAA)n Simple_repeat Simple_repeat 2 44 0 1917 132 6 32 chr15 56747601 56747912 -28947842 - AluJb SINE Alu -8 304 2 1989 95 4 4 chr15 56747928 56748191 -28947563 + AluSc SINE Alu 23 285 -24 324 143 130 65 chr15 56748269 56748346 -28947408 + L1MC2 LINE L1 6212 6293 -51 * 720 224 19 52 chr15 56748344 56748554 -28947200 + L1ME1 LINE L1 5912 6114 -52 184 284 90 30 chr15 56748857 56748924 -28946830 - L2 LINE L2 0 3313 3243 2144 105 3 10 chr15 56749286 56749582 -28946172 + AluSx SINE Alu 1 294 -18 631 250 139 0 chr15 56750543 56750723 -28945031 + MER58C DNA MER1_type 11 215 0 236 341 22 0 chr15 56750792 56750883 -28944871 - MIR3 SINE MIR -4 204 112 2236 110 3 3 chr15 56751802 56752110 -28943644 + AluSc SINE Alu 1 308 -1 297 75 0 0 chr15 56752561 56752601 -28943153 + (CCA)n Simple_repeat Simple_repeat 1 40 0 2039 137 13 0 chr15 56752658 56752964 -28942790 + AluSx SINE Alu 1 310 -2 2478 122 83 0 chr15 56753722 56754117 -28941637 + MSTA LTR MaLR 1 428 0 193 326 30 74 chr15 56754218 56754353 -28941401 + L2 LINE L2 2887 3015 -257 23 68 0 0 chr15 56755445 56755489 -28940265 + AT_rich Low_complexity Low_complexity 1 44 0 405 270 154 43 chr15 56756195 56756428 -28939326 - MIR SINE MIR -1 261 3 2348 38 0 14 chr15 56756766 56757115 -28938639 + AluY SINE Alu 1 345 0 1310 171 65 77 chr15 56757923 56758154 -28937600 - MER7A DNA MER2_type -2692 346 114 1777 172 10 7 chr15 56758154 56758451 -28937303 + AluJb SINE Alu 1 298 -14 1310 171 65 77 chr15 56758451 56758508 -28937246 - MER7A DNA MER2_type -2924 114 58 2166 99 3 55 chr15 56758508 56758820 -28936934 - AluSx SINE Alu -16 296 1 1310 171 65 77 chr15 56758820 56758882 -28936872 - MER7A DNA MER2_type -2980 58 1 195 42 0 0 chr15 56759239 56759263 -28936491 + (TA)n Simple_repeat Simple_repeat 1 24 0 1917 158 0 10 chr15 56761532 56761829 -28933925 - AluJb SINE Alu -18 294 1 220 365 43 9 chr15 56762163 56762278 -28933476 - L2 LINE L2 -563 2751 2633 987 204 0 0 chr15 56762319 56762486 -28933268 + FAM SINE Alu 1 167 -8 221 186 14 0 chr15 56763125 56763195 -28932559 + CT-rich Low_complexity Low_complexity 2 72 0 2087 134 0 10 chr15 56764070 56764376 -28931378 - AluSx SINE Alu -9 303 1 427 236 57 0 chr15 56765837 56765943 -28929811 + MER58 DNA MER1_type 173 284 -57 484 285 114 0 chr15 56766962 56767120 -28928634 + MIR SINE MIR 36 211 -51 389 277 20 0 chr15 56767225 56767332 -28928422 - MIR SINE MIR -97 111 2 375 181 164 26 chr15 56767685 56767801 -28927953 - MIR3 SINE MIR -2 206 75 27 0 0 0 chr15 56768798 56768825 -28926929 + AT_rich Low_complexity Low_complexity 1 27 0 1134 145 0 6 chr15 56769091 56769257 -28926497 + AluJb SINE Alu 131 295 -17 1822 159 31 3 chr15 56770011 56770301 -28925453 - AluJb SINE Alu -10 302 5 395 276 55 16 chr15 56770416 56770543 -28925211 + MIR SINE MIR 57 188 -74 464 198 90 18 chr15 56771030 56771141 -28924613 - MIR SINE MIR -27 235 117 702 259 99 13 chr15 56771685 56771917 -28923837 - MIR SINE MIR -10 252 1 392 231 102 0 chr15 56772351 56772459 -28923295 - L2 LINE L2 -3 3310 3192 270 0 0 0 chr15 56772527 56772557 -28923197 + (A)n Simple_repeat Simple_repeat 1 30 0 279 327 48 0 chr15 56773131 56773235 -28922519 + L2 LINE L2 3150 3258 -14 22713 138 24 34 chr15 56773762 56775923 -28919831 + L1MA3 LINE L1 12 2194 -5530 876 114 0 0 chr15 56775923 56776054 -28919700 + L1MA2 LINE L1 6172 6302 -2 22713 138 24 34 chr15 56776054 56777236 -28918518 + L1MA3 LINE L1 2194 3387 -4337 204 97 0 0 chr15 56777236 56777267 -28918487 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22713 138 24 34 chr15 56777267 56778828 -28916926 + L1MA3 LINE L1 3387 4963 -2761 2420 77 0 16 chr15 56778828 56779141 -28916613 + AluSp SINE Alu 1 308 -5 22713 138 24 34 chr15 56779141 56781681 -28914073 + L1MA3 LINE L1 4963 7384 -340 1626 146 8 0 chr15 56782967 56783214 -28912540 + AluSx SINE Alu 1 249 -63 23 68 0 0 chr15 56783528 56783572 -28912182 + AT_rich Low_complexity Low_complexity 1 44 0 208 368 44 0 chr15 56784636 56784704 -28911050 - L2 LINE L2 -16 3297 3227 718 145 15 23 chr15 56784948 56785079 -28910675 - L1PA15 LINE L1 -6 6159 6030 1452 138 71 3 chr15 56785391 56785673 -28910081 + MER33 DNA MER1_type 24 324 0 2343 80 3 3 chr15 56786055 56786354 -28909400 - AluSc SINE Alu -10 299 1 343 254 112 12 chr15 56786360 56786529 -28909225 + L1ME4a LINE L1 5932 6117 -4 34 0 0 0 chr15 56786837 56786871 -28908883 + AT_rich Low_complexity Low_complexity 1 34 0 5509 159 30 5 chr15 56787321 56788944 -28906810 + L1P5 LINE L1 4131 5791 -360 509 207 16 0 chr15 56788944 56789065 -28906689 + (CATATA)n Simple_repeat Simple_repeat 3 125 0 205 239 0 0 chr15 56791064 56791110 -28904644 + C-rich Low_complexity Low_complexity 1 46 0 313 322 73 96 chr15 56791223 56791537 -28904217 - L2 LINE L2 -3 3269 2963 1001 123 82 126 chr15 56791544 56791861 -28903893 - MER33 DNA MER1_type 0 324 22 325 362 85 24 chr15 56791895 56792141 -28903613 - L2 LINE L2 -483 2831 2571 775 179 0 0 chr15 56792979 56793102 -28902652 + FLAM_A SINE Alu 1 123 -10 265 248 107 73 chr15 56793205 56793411 -28902343 - L2 LINE L2 -1925 1389 1177 198 208 21 0 chr15 56793436 56793484 -28902270 - MIR SINE MIR -68 194 146 431 278 100 52 chr15 56793756 56793986 -28901768 - MIR SINE MIR 0 262 22 1872 143 25 38 chr15 56794025 56794339 -28901415 + AluJb SINE Alu 1 382 0 338 139 14 14 chr15 56794339 56794411 -28901343 + GA-rich Low_complexity Low_complexity 1 180 0 1775 187 7 3 chr15 56794416 56794716 -28901038 + AluJo SINE Alu 1 301 -11 3250 163 178 115 chr15 56794722 56795190 -28900564 - L1MD3 LINE L1 -73 7922 7485 674 200 8 0 chr15 56795190 56795320 -28900434 - MLT1F1 LTR MaLR -436 131 1 3250 163 178 115 chr15 56795320 56796008 -28899746 - L1MD3 LINE L1 -510 7485 6531 1576 194 133 34 chr15 56796008 56796421 -28899333 - L2 LINE L2 -772 2542 2089 1601 166 27 47 chr15 56796627 56796923 -28898831 + AluJo SINE Alu 1 290 -22 233 231 58 0 chr15 56797869 56797921 -28897833 + L2 LINE L2 3257 3311 -2 1910 75 3 156 chr15 56798117 56798463 -28897291 + AluSp SINE Alu 4 296 -17 777 250 55 10 chr15 56798545 56798745 -28897009 + MIR SINE MIR 13 221 -41 217 286 0 18 chr15 56798957 56799013 -28896741 - L2 LINE L2 -1 3312 3258 775 264 134 0 chr15 56799044 56799245 -28896509 + MIR SINE MIR 8 235 -27 1823 162 13 13 chr15 56799446 56799749 -28896005 - AluJb SINE Alu -9 303 1 2363 82 31 11 chr15 56799999 56800351 -28895403 - L1PB1 LINE L1 -2 6149 5791 294 29 0 0 chr15 56800351 56800386 -28895368 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 264 23 0 chr15 56800386 56800473 -28895281 + L1MC4 LINE L1 6615 6703 -1339 304 307 23 0 chr15 56800465 56800553 -28895201 - L1MC4 LINE L1 -1339 6703 6614 * 180 219 0 0 chr15 56800554 56800595 -28895159 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 515 122 131 20 chr15 56800634 56800753 -28895001 - L1P5 LINE L1 -360 5791 5662 324 286 132 105 chr15 56801009 56801867 -28893887 + L1M2 LINE L1 526 1406 -5443 2314 60 7 0 chr15 56803920 56804203 -28891551 + AluSg SINE Alu 17 301 -9 315 276 78 17 chr15 56805513 56805629 -28890125 - L2 LINE L2 -1 3312 3190 307 208 42 28 chr15 56805971 56806043 -28889711 + MIR SINE MIR 73 145 -117 249 336 81 50 chr15 56806567 56806924 -28888830 + L2 LINE L2 2936 3303 -10 231 304 76 0 chr15 56806965 56807044 -28888710 + L2 LINE L2 3188 3272 0 2092 155 89 52 chr15 56807338 56807788 -28887966 + L1MB7 LINE L1 5630 6103 -81 2607 125 20 34 chr15 56807788 56808228 -28887526 - Tigger2a DNA MER2_type 0 434 1 2092 155 89 52 chr15 56808228 56808293 -28887461 + L1MB7 LINE L1 6103 6164 -20 243 128 64 21 chr15 56808841 56808888 -28886866 - L2 LINE L2 -4 3309 3261 260 326 82 20 chr15 56808931 56809078 -28886676 - L1MC4 LINE L1 -2159 5649 5494 457 328 0 0 chr15 56809435 56809557 -28886197 - MIR SINE MIR -122 140 19 1762 165 28 7 chr15 56810255 56810546 -28885208 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr15 56810597 56810626 -28885128 + AT_rich Low_complexity Low_complexity 1 29 0 754 203 0 0 chr15 56810629 56810752 -28885002 + FLAM_C SINE Alu 1 123 -20 21 0 0 0 chr15 56810753 56810774 -28884980 + AT_rich Low_complexity Low_complexity 1 21 0 719 114 197 0 chr15 56810780 56810912 -28884842 - AluYa5 SINE Alu -6 305 148 319 290 47 31 chr15 56811132 56811325 -28884429 + L1ME LINE L1 5602 5797 -324 213 204 19 19 chr15 56811484 56811538 -28884216 - MIR SINE MIR 0 262 209 328 249 56 122 chr15 56811718 56811915 -28883839 - MIR SINE MIR -44 218 35 410 174 12 0 chr15 56812327 56812413 -28883341 + MLT1D LTR MaLR 419 505 0 377 310 109 5 chr15 56812413 56812726 -28883028 + L1ME3A LINE L1 1085 1472 -4838 2233 114 0 28 chr15 56812730 56812764 -28882990 - AluSx SINE Alu -4 308 275 224 29 0 29 chr15 56812764 56812798 -28882956 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2233 114 0 28 chr15 56812798 56813080 -28882674 - AluSx SINE Alu -37 275 1 3702 118 48 6 chr15 56813091 56813716 -28882038 - L1MA8 LINE L1 -3 6288 5638 1661 246 79 30 chr15 56813760 56814008 -28881746 + L1ME3A LINE L1 2884 3119 -3010 2460 90 0 0 chr15 56814008 56814319 -28881435 + AluSq SINE Alu 1 311 -2 1661 246 79 30 chr15 56814319 56814655 -28881099 + L1ME3A LINE L1 3119 3518 -2611 1473 178 120 7 chr15 56814655 56814930 -28880824 + AluJo SINE Alu 1 306 -6 1661 246 79 30 chr15 56814930 56815133 -28880621 + L1ME3A LINE L1 3518 3710 -2419 1744 212 117 64 chr15 56815200 56816565 -28879189 + L1ME3A LINE L1 4319 5759 -394 617 202 129 62 chr15 56816578 56816850 -28878904 + L1ME3A LINE L1 5828 6117 -36 1940 107 10 34 chr15 56816864 56817162 -28878592 - AluSx SINE Alu -21 291 1 1604 292 132 54 chr15 56817276 56818017 -28877737 + L2 LINE L2 1860 2542 -771 1963 162 3 7 chr15 56818017 56818326 -28877428 - AluSx SINE Alu -4 308 1 1604 292 132 54 chr15 56818326 56818921 -28876833 + L2 LINE L2 2542 3313 0 2293 96 0 7 chr15 56819141 56819442 -28876312 - AluSq SINE Alu -14 299 1 1762 139 9 69 chr15 56819530 56819847 -28875907 - AluJo SINE Alu -14 298 1 2293 61 10 10 chr15 56820364 56820659 -28875095 - AluY SINE Alu -16 295 1 204 274 0 16 chr15 56820659 56820721 -28875033 + L3 LINE CR1 1351 1411 -166 2080 242 90 18 chr15 56820993 56821965 -28873789 - L1ME3 LINE L1 -21 6141 5061 658 261 114 59 chr15 56822160 56822547 -28873207 - MLT1I LTR MaLR -1 408 1 675 205 33 7 chr15 56822557 56822708 -28873046 + MIR SINE MIR 95 249 -13 619 288 52 14 chr15 56822737 56822949 -28872805 - MIR SINE MIR -15 247 28 312 313 70 9 chr15 56823208 56823323 -28872431 - MIR SINE MIR -71 137 16 270 157 0 0 chr15 56824393 56824444 -28871310 - AluSx SINE Alu -4 304 254 22 0 0 0 chr15 56824566 56824588 -28871166 + AT_rich Low_complexity Low_complexity 1 22 0 280 167 31 115 chr15 56824679 56824721 -28871033 - L1ME4a LINE L1 -84 6037 6006 1978 116 0 0 chr15 56824721 56824988 -28870766 - AluSx SINE Alu -7 305 39 280 167 31 115 chr15 56824988 56825041 -28870713 - L1ME4a LINE L1 -115 6006 5950 243 0 0 0 chr15 56825046 56825073 -28870681 + (ATG)n Simple_repeat Simple_repeat 1 27 0 279 0 0 0 chr15 56825073 56825104 -28870650 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1779 113 0 0 chr15 56825109 56825347 -28870407 - AluSx SINE Alu -36 276 39 300 161 0 18 chr15 56825348 56825404 -28870350 - L1ME4a LINE L1 -117 6004 5950 1779 161 0 18 chr15 56825419 56825704 -28870050 - AluJb SINE Alu -32 280 1 309 234 0 39 chr15 56825832 56825909 -28869845 - MIR SINE MIR -73 189 116 489 161 11 11 chr15 56827098 56827185 -28868569 - Tigger7 DNA MER2_type 0 2491 2405 2675 163 63 6 chr15 56827192 56827684 -28868070 - Tigger7 DNA MER2_type -213 520 1 217 352 0 88 chr15 56827989 56828080 -28867674 + L2 LINE L2 3143 3225 -47 2581 54 0 0 chr15 56828219 56828516 -28867238 + AluY SINE Alu 1 297 -14 1253 253 216 21 chr15 56829753 56830435 -28865319 + L2 LINE L2 2517 3313 0 1590 110 129 0 chr15 56830495 56830758 -28864996 + AluSg SINE Alu 1 297 -3 27 49 0 0 chr15 56831278 56831319 -28864435 + AT_rich Low_complexity Low_complexity 1 41 0 2004 137 79 13 chr15 56831342 56831721 -28864033 - L1MC1 LINE L1 -14 6319 5916 432 125 0 0 chr15 56831738 56831802 -28863952 - Tigger4(Zombi) DNA MER2_type -2 2729 2666 1320 62 0 6 chr15 56831802 56832003 -28863751 - AluY SINE Alu 0 320 121 2461 117 50 7 chr15 56832003 56832423 -28863331 - Tigger4(Zombi) DNA MER2_type -72 2659 2222 288 278 0 0 chr15 56832420 56832492 -28863262 - Tigger4(Zombi) DNA MER2_type -2570 161 90 * 641 144 42 0 chr15 56832495 56832613 -28863141 - L1MC/D LINE L1 -778 5555 5433 496 179 21 0 chr15 56832613 56832708 -28863046 - Tigger4(Zombi) DNA MER2_type -2630 101 5 2871 128 23 10 chr15 56832710 56833194 -28862560 - L1MC1 LINE L1 -427 5906 5417 275 270 0 0 chr15 56833196 56833259 -28862495 - MER2 DNA MER2_type -1 344 282 * 414 233 22 0 chr15 56833247 56833337 -28862417 - MER8 DNA MER2_type -73 166 75 286 293 23 40 chr15 56833351 56833525 -28862229 - L2 LINE L2 -108 3205 3035 272 398 29 65 chr15 56833908 56834292 -28861462 - L2 LINE L2 0 3272 2903 4261 153 18 58 chr15 56834293 56834638 -28861116 + L1MB7 LINE L1 4989 5346 -988 1911 158 0 14 chr15 56834638 56834929 -28860825 + AluSx SINE Alu 1 287 -25 4261 153 18 58 chr15 56834929 56835585 -28860169 + L1MB7 LINE L1 5346 6097 -237 1662 147 58 34 chr15 56835585 56835878 -28859876 + AluJo SINE Alu 4 303 -9 4261 153 18 58 chr15 56835878 56836102 -28859652 + L1MB7 LINE L1 6097 6328 -6 237 232 304 30 chr15 56836384 56836552 -28859202 - L2 LINE L2 -2236 1078 865 1597 118 180 0 chr15 56838094 56838349 -28857405 + AluSx SINE Alu 3 303 -9 319 274 26 26 chr15 56839661 56839778 -28855976 - MIR SINE MIR -74 188 72 1203 296 56 30 chr15 56840992 56841458 -28854296 - L2 LINE L2 -4 3309 2832 456 235 61 0 chr15 56841501 56841599 -28854155 - MER5A DNA MER1_type -77 112 9 * 3991 225 55 88 chr15 56841597 56842396 -28853358 - L2 LINE L2 -485 2829 2092 2314 109 3 3 chr15 56842396 56842700 -28853054 + AluSx SINE Alu 1 304 -8 3991 225 55 88 chr15 56842700 56843276 -28852478 - L2 LINE L2 -1222 2092 1499 376 354 139 29 chr15 56843779 56844293 -28851461 + L2 LINE L2 1804 2260 -1054 207 0 0 0 chr15 56844293 56844316 -28851438 + (CA)n Simple_repeat Simple_repeat 1 23 0 376 354 139 29 chr15 56844316 56844454 -28851300 + L2 LINE L2 2260 2381 -933 2298 122 3 0 chr15 56844454 56844765 -28850989 - AluSx SINE Alu 0 312 1 376 354 139 29 chr15 56844765 56844872 -28850882 + L2 LINE L2 2381 2648 -666 189 200 0 0 chr15 56846310 56846350 -28849404 + L2 LINE L2 3274 3313 0 2353 99 3 6 chr15 56846671 56846983 -28848771 + AluSx SINE Alu 1 311 -1 2016 152 3 0 chr15 56847087 56847383 -28848371 - AluSx SINE Alu -10 302 6 2300 105 0 7 chr15 56847792 56848096 -28847658 + AluSp SINE Alu 1 302 -11 240 147 11 84 chr15 56848691 56848786 -28846968 + T-rich Low_complexity Low_complexity 5 92 0 21 36 0 0 chr15 56849933 56849961 -28845793 + AT_rich Low_complexity Low_complexity 1 28 0 1687 228 83 111 chr15 56850091 56850262 -28845492 - L1MC4 LINE L1 -2 8040 7866 222 37 0 0 chr15 56850262 56850289 -28845465 + (TC)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chr15 56850291 56850320 -28845434 + (CA)n Simple_repeat Simple_repeat 1 29 0 1687 228 83 111 chr15 56850320 56851103 -28844651 - L1MC4 LINE L1 -177 7865 7109 1065 203 57 13 chr15 56851103 56851330 -28844424 - AluJo SINE Alu -75 237 1 2093 137 0 0 chr15 56851341 56851661 -28844093 - AluSx SINE Alu 0 320 1 366 242 0 10 chr15 56851743 56851842 -28843912 - L1MC4 LINE L1 -1000 7042 6945 21 0 0 0 chr15 56852540 56852561 -28843193 + AT_rich Low_complexity Low_complexity 1 21 0 2416 90 0 6 chr15 56853955 56854266 -28841488 - AluSc SINE Alu 0 309 1 280 274 0 108 chr15 56856028 56856185 -28839569 - MIR3 SINE MIR -38 170 31 2379 93 0 10 chr15 56857892 56858205 -28837549 + AluSx SINE Alu 1 310 -2 594 115 146 0 chr15 56861192 56861288 -28834466 + FLAM_A SINE Alu 22 131 -11 183 309 143 0 chr15 56861321 56861405 -28834349 + MIR SINE MIR 2 97 -165 1698 171 6 41 chr15 56861703 56862019 -28833735 + AluJb SINE Alu 1 305 -7 1775 173 13 7 chr15 56862028 56862329 -28833425 + AluJo SINE Alu 5 307 -5 267 288 18 36 chr15 56863709 56863820 -28831934 - MIR SINE MIR -65 143 35 190 0 67 0 chr15 56864619 56864649 -28831105 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 248 0 31 0 chr15 56865802 56865834 -28829920 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 637 159 35 18 chr15 56865836 56865949 -28829805 - FAM SINE Alu -29 156 42 225 0 0 0 chr15 56866015 56866040 -28829714 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2505 79 0 0 chr15 56867344 56867648 -28828106 + AluSc SINE Alu 1 304 -5 2474 70 7 0 chr15 56867952 56868251 -28827503 - AluSq SINE Alu -12 301 1 245 286 19 29 chr15 56868333 56868438 -28827316 + MIR SINE MIR 33 136 -72 899 264 149 58 chr15 56868570 56869021 -28826733 - MLT1J LTR MaLR -4 507 16 235 368 28 28 chr15 56870008 56870114 -28825640 - L2 LINE L2 -62 3210 3105 505 248 131 15 chr15 56870397 56870595 -28825159 - MER112 DNA MER1_type -10 250 30 614 280 35 39 chr15 56870630 56870862 -28824892 + MIR SINE MIR 31 261 -1 289 316 83 26 chr15 56870901 56871094 -28824660 - MIR SINE MIR -31 231 28 1042 276 105 32 chr15 56871346 56871686 -28824068 - L2 LINE L2 -248 3065 2654 2107 125 0 37 chr15 56871686 56872007 -28823747 + AluSx SINE Alu 1 309 -3 1042 276 105 32 chr15 56872007 56872234 -28823520 - L2 LINE L2 -659 2654 2445 889 138 0 0 chr15 56872235 56872358 -28823396 + AluJb SINE Alu 3 125 -187 215 312 43 29 chr15 56872364 56872502 -28823252 - L2 LINE L2 -849 2465 2326 2080 176 59 2 chr15 56873705 56874130 -28821624 - Charlie4a DNA MER1_type -7 501 53 1393 182 91 21 chr15 56874242 56874528 -28821226 + AluJb SINE Alu 1 306 -6 513 318 147 24 chr15 56874771 56875673 -28820081 - L2 LINE L2 -56 3257 2244 1930 172 3 0 chr15 56875825 56876122 -28819632 - AluJo SINE Alu -14 298 1 2241 123 0 3 chr15 56876959 56877267 -28818487 + AluSx SINE Alu 4 310 -2 252 0 0 0 chr15 56879345 56879373 -28816381 + (GA)n Simple_repeat Simple_repeat 2 29 0 252 0 0 0 chr15 56879372 56879400 -28816354 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr15 56879520 56879545 -28816209 + AT_rich Low_complexity Low_complexity 1 25 0 228 282 63 26 chr15 56880269 56880400 -28815354 + MIR SINE MIR 34 167 -62 403 154 22 22 chr15 56880610 56880701 -28815053 - L1MC4 LINE L1 -873 7169 7079 2373 98 0 3 chr15 56881513 56881820 -28813934 - AluSx SINE Alu -6 306 1 305 298 68 31 chr15 56881869 56882030 -28813724 - MIR SINE MIR -74 188 22 2349 91 0 26 chr15 56882250 56882558 -28813196 - AluSq SINE Alu -13 300 1 292 235 12 25 chr15 56882791 56882872 -28812882 + L2 LINE L2 3185 3264 -8 374 317 182 6 chr15 56882966 56883461 -28812293 + L2 LINE L2 1839 2420 -894 1578 203 36 3 chr15 56883679 56884009 -28811745 + MER58B DNA MER1_type 1 341 0 268 329 77 28 chr15 56884232 56884375 -28811379 + L2 LINE L2 3114 3263 -9 1898 161 10 6 chr15 56884375 56884686 -28811068 + AluJo SINE Alu 1 312 0 192 242 11 159 chr15 56884935 56885117 -28810637 + MIR3 SINE MIR 49 203 -5 245 323 40 0 chr15 56885241 56885340 -28810414 - MIR SINE MIR -70 192 90 455 252 192 0 chr15 56885416 56885567 -28810187 - MER5A DNA MER1_type 0 189 10 230 118 0 0 chr15 56885575 56885609 -28810145 - MER91 DNA MER1_type -102 38 5 265 288 0 12 chr15 56885613 56885693 -28810061 - MIR3 SINE MIR -120 88 10 530 123 344 0 chr15 56887773 56887895 -28807859 + MER53 DNA DNA 25 188 -1 1026 210 82 66 chr15 56888634 56888953 -28806801 + MLT2D LTR ERVL 91 414 0 333 277 39 39 chr15 56889107 56889262 -28806492 - LTR16C LTR ERVL 0 491 337 395 321 48 17 chr15 56890037 56890243 -28805511 - MIR SINE MIR -19 243 34 206 307 13 0 chr15 56890642 56890717 -28805037 - L2 LINE L2 -1 3312 3237 204 40 0 0 chr15 56890890 56890915 -28804839 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 1784 177 17 7 chr15 56890923 56891222 -28804532 - AluJb SINE Alu -10 302 1 468 0 0 0 chr15 56891222 56891274 -28804480 + (TG)n Simple_repeat Simple_repeat 2 53 0 2266 98 3 3 chr15 56891290 56891587 -28804167 + AluSx SINE Alu 1 297 -15 240 182 23 0 chr15 56891590 56891634 -28804120 + MER69 DNA AcHobo 2479 2523 -3 2005 221 84 4 chr15 56892742 56893204 -28802550 + L1MC4 LINE L1 6450 6948 -1094 5449 133 44 3 chr15 56893204 56894097 -28801657 + L1MB3 LINE L1 5255 6183 0 2576 207 122 31 chr15 56894120 56894864 -28800890 + L1MC4 LINE L1 6935 7746 -296 228 77 0 77 chr15 56894918 56894957 -28800797 + L1MC4 LINE L1 7865 7900 -142 1462 207 51 18 chr15 56895004 56895121 -28800633 + L1ME3 LINE L1 5612 5724 -446 1496 157 69 111 chr15 56895121 56895399 -28800355 - MLT1B LTR MaLR 0 390 133 2376 86 7 0 chr15 56895399 56895690 -28800064 - AluSc SINE Alu -16 293 1 1496 157 69 111 chr15 56895690 56895818 -28799936 - MLT1B LTR MaLR -257 133 1 1462 207 51 18 chr15 56895818 56896034 -28799720 + L1ME3 LINE L1 5724 5956 -214 349 208 32 33 chr15 56896105 56896210 -28799544 + L1ME3 LINE L1 6060 6163 -1 625 340 82 21 chr15 56896223 56896781 -28798973 - L2 LINE L2 -400 2914 2323 383 248 80 93 chr15 56896824 56897050 -28798704 - MER102a DNA MER1_type -13 317 95 189 0 0 0 chr15 56897076 56897097 -28798657 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 915 134 0 7 chr15 56897114 56897256 -28798498 - AluJb SINE Alu -171 141 1 24 0 0 0 chr15 56897268 56897292 -28798462 + AT_rich Low_complexity Low_complexity 1 24 0 951 201 0 6 chr15 56897995 56898159 -28797595 + FRAM SINE Alu 1 163 -3 300 268 128 34 chr15 56898330 56898509 -28797245 - L2 LINE L2 -190 3082 2887 349 301 0 0 chr15 56898969 56899052 -28796702 + L2 LINE L2 3228 3310 -3 369 338 106 0 chr15 56899523 56899683 -28796071 + MIR SINE MIR 72 248 -14 2024 203 11 8 chr15 56901072 56901432 -28794322 + MLT1A1 LTR MaLR 1 361 -4 638 219 98 68 chr15 56901548 56901585 -28794169 + L1ME3A LINE L1 5408 5442 -720 2279 80 0 0 chr15 56901585 56901871 -28793883 + AluY SINE Alu 1 286 -25 351 0 0 0 chr15 56901875 56901914 -28793840 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 638 219 98 68 chr15 56901914 56902209 -28793545 + L1ME3A LINE L1 5444 5755 -407 365 290 64 30 chr15 56903499 56903675 -28792079 - MIR SINE MIR -37 225 42 1707 107 8 4 chr15 56904280 56904522 -28791232 + AluSc SINE Alu 59 301 -8 953 242 77 24 chr15 56904547 56904886 -28790868 + L1ME3A LINE L1 5811 6167 -3 3490 224 127 30 chr15 56904892 56905067 -28790687 + L1MC4a LINE L1 5815 5972 -1836 229 26 53 0 chr15 56905067 56905105 -28790649 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 3490 224 127 30 chr15 56905105 56906208 -28789546 + L1MC4a LINE L1 5972 7217 -591 917 145 0 78 chr15 56906208 56906387 -28789367 - FRAM SINE Alu -15 161 1 321 145 14 48 chr15 56906387 56906532 -28789222 + (TA)n Simple_repeat Simple_repeat 2 141 0 232 244 50 92 chr15 56907552 56907671 -28788083 + MIR SINE MIR 21 134 -74 1400 201 0 21 chr15 56907841 56908167 -28787587 - AluJo SINE Alu 0 312 24 2732 3 0 19 chr15 56908698 56909015 -28786739 + AluYa5 SINE Alu 1 311 0 2349 152 120 1 chr15 56909120 56910378 -28785376 + SATR1 Satellite Satellite 1 1408 -132 767 236 102 0 chr15 56910544 56910760 -28784994 - MLT1H LTR MaLR -307 242 5 921 245 9 9 chr15 56911148 56911381 -28784373 - L1M4 LINE L1 -1117 5029 4797 486 240 235 0 chr15 56911381 56911526 -28784228 + MLT1H LTR MaLR 251 361 -188 288 0 0 0 chr15 56911526 56911558 -28784196 + (CAGCC)n Simple_repeat Simple_repeat 1 32 0 486 240 235 0 chr15 56911558 56911629 -28784125 + MLT1H LTR MaLR 361 518 -31 314 333 96 42 chr15 56911673 56912006 -28783748 + L1ME4a LINE L1 5727 6077 -44 258 244 47 23 chr15 56912251 56912337 -28783417 - MIR3 SINE MIR -17 191 104 193 298 61 53 chr15 56912825 56912956 -28782798 + MIR SINE MIR 15 146 -116 381 75 0 0 chr15 56913342 56913395 -28782359 + (CA)n Simple_repeat Simple_repeat 2 54 0 419 262 97 0 chr15 56913397 56913542 -28782212 - MER103 DNA DNA -1 165 7 754 249 89 68 chr15 56913609 56914023 -28781731 - MLT1J LTR MaLR -50 461 39 2292 106 0 0 chr15 56914027 56914338 -28781416 + AluY SINE Alu 1 311 0 1400 39 11 0 chr15 56914339 56914407 -28781347 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 1400 39 11 0 chr15 56914407 56914585 -28781169 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 343 269 23 54 chr15 56914676 56914806 -28780948 + MIR SINE MIR 34 159 -103 2159 110 0 7 chr15 56914869 56915169 -28780585 - AluSx SINE Alu -14 298 1 184 265 0 0 chr15 56915234 56915283 -28780471 - MIR SINE MIR -62 146 98 1338 298 70 25 chr15 56916014 56916571 -28779183 + MLT1K LTR MaLR 3 584 -4 365 354 152 6 chr15 56916578 56916894 -28778860 - L3 LINE CR1 -925 652 291 254 234 64 64 chr15 56917446 56917540 -28778214 - MIR3 SINE MIR -21 187 94 440 343 81 19 chr15 56917978 56918205 -28777549 - MIR SINE MIR -14 248 15 180 0 0 0 chr15 56918591 56918611 -28777143 + (GA)n Simple_repeat Simple_repeat 1 20 0 301 281 110 10 chr15 56919288 56919496 -28776258 + MIR SINE MIR 18 251 -11 317 233 12 0 chr15 56919929 56920015 -28775739 + L1MC/D LINE L1 5688 5774 -2034 1973 92 4 0 chr15 56920053 56920313 -28775441 + AluSp SINE Alu 1 261 -52 1643 121 117 4 chr15 56920488 56920761 -28774993 - AluSx SINE Alu -8 304 1 273 328 62 28 chr15 56921537 56921714 -28774040 - MIR3 SINE MIR -25 183 1 22 0 0 0 chr15 56922202 56922224 -28773530 + AT_rich Low_complexity Low_complexity 1 22 0 185 246 77 15 chr15 56922362 56922427 -28773327 + L2 LINE L2 3109 3177 -95 184 367 0 0 chr15 56922701 56922761 -28772993 - MIR SINE MIR -103 105 46 183 247 62 103 chr15 56924182 56924279 -28771475 - MIR SINE MIR -67 195 103 445 277 166 32 chr15 56924381 56924724 -28771030 + L2 LINE L2 2373 2761 -553 402 263 165 59 chr15 56924761 56925149 -28770605 + L2 LINE L2 2869 3297 -16 243 88 0 0 chr15 56925149 56925183 -28770571 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 254 327 58 10 chr15 56926127 56926231 -28769523 + MIR3 SINE MIR 93 201 -7 204 286 0 16 chr15 56926383 56926446 -28769308 + GA-rich Low_complexity Low_complexity 3 64 0 386 257 211 18 chr15 56927005 56927176 -28768578 - L2 LINE L2 -53 3219 3016 753 175 153 0 chr15 56927180 56927357 -28768397 - MER3 DNA MER1_type -5 204 1 212 345 109 35 chr15 56927392 56927740 -28768014 - L2 LINE L2 -341 2973 2600 185 407 11 0 chr15 56927933 56928024 -28767730 - L2 LINE L2 -1050 2264 2173 254 206 48 0 chr15 56928309 56928372 -28767382 + MLT1G LTR MaLR 4 69 -526 1786 252 32 101 chr15 56928412 56928473 -28767281 + MLT1G LTR MaLR 27 91 -499 2450 50 0 7 chr15 56928473 56928774 -28766980 + AluY SINE Alu 1 299 -12 1786 252 32 101 chr15 56928774 56929267 -28766487 + MLT1G LTR MaLR 91 578 -12 182 296 0 19 chr15 56929608 56929662 -28766092 + MIR SINE MIR 101 153 -109 191 146 24 0 chr15 56930376 56930417 -28765337 + CT-rich Low_complexity Low_complexity 4 45 0 270 254 118 81 chr15 56930831 56930874 -28764880 - MIR SINE MIR -7 255 215 2029 138 0 0 chr15 56930874 56931170 -28764584 - AluSx SINE Alu -16 296 1 270 254 118 81 chr15 56931170 56931312 -28764442 - MIR SINE MIR -47 215 64 253 296 0 62 chr15 56932007 56932169 -28763585 + GA-rich Low_complexity Low_complexity 1 152 0 564 108 23 40 chr15 56933641 56933817 -28761937 + (TG)n Simple_repeat Simple_repeat 1 173 0 586 78 16 83 chr15 56933859 56934052 -28761702 + (TG)n Simple_repeat Simple_repeat 1 180 0 901 236 75 5 chr15 56935128 56935340 -28760414 - MIR SINE MIR -34 228 2 694 265 141 0 chr15 56935351 56935577 -28760177 - MIR SINE MIR -2 260 3 299 284 15 3 chr15 56935577 56935683 -28760071 + MIR SINE MIR 49 156 -52 271 241 0 0 chr15 56935806 56935864 -28759890 - MIR SINE MIR -118 144 87 319 213 110 39 chr15 56935904 56936031 -28759723 - MIR3 SINE MIR -61 147 12 489 311 124 19 chr15 56936407 56936722 -28759032 + L3 LINE CR1 1216 1563 -14 1199 311 36 11 chr15 56937466 56937993 -28757761 + L1ME3A LINE L1 5416 5955 -215 22 35 0 0 chr15 56937994 56938023 -28757731 + AT_rich Low_complexity Low_complexity 1 29 0 217 325 54 51 chr15 56938242 56938484 -28757270 + MIR3 SINE MIR 14 252 -10 * 1198 248 16 0 chr15 56938430 56938680 -28757074 - MIR SINE MIR -3 259 6 270 136 0 0 chr15 56938760 56938804 -28756950 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 209 231 0 44 chr15 56941970 56942061 -28753693 + G-rich Low_complexity Low_complexity 6 92 0 45 79 0 0 chr15 56942106 56942207 -28753547 + GC_rich Low_complexity Low_complexity 1 101 0 229 250 15 0 chr15 56942290 56942358 -28753396 + C-rich Low_complexity Low_complexity 4 72 0 211 109 31 78 chr15 56942383 56942447 -28753307 + GA-rich Low_complexity Low_complexity 1 61 0 2072 174 28 104 chr15 56942948 56943058 -28752696 + L1MC4 LINE L1 7420 7537 -505 2047 112 0 32 chr15 56943058 56943372 -28752382 - AluY SINE Alu -7 304 1 2072 174 28 104 chr15 56943372 56943935 -28751819 + L1MC4 LINE L1 7537 8042 0 1496 221 62 39 chr15 56943972 56944439 -28751315 - L1ME2 LINE L1 -16 6148 5671 358 249 13 0 chr15 56945506 56945600 -28750154 - MIR SINE MIR -84 124 28 302 347 73 0 chr15 56946677 56946827 -28748927 - MIR3 SINE MIR -28 180 20 435 242 94 0 chr15 56947309 56947437 -28748317 - MIR3 SINE MIR -39 169 30 200 388 82 0 chr15 56947751 56947836 -28747918 + MIR SINE MIR 21 112 -150 536 303 72 7 chr15 56948875 56949070 -28746684 - MIR SINE MIR -23 239 37 1222 273 35 56 chr15 56949771 56949999 -28745755 + L2 LINE L2 2807 3038 -275 2147 95 0 50 chr15 56949999 56950316 -28745438 - AluSg SINE Alu -9 301 1 1222 273 35 56 chr15 56950316 56950603 -28745151 + L2 LINE L2 3038 3311 -2 432 243 9 18 chr15 56950665 56950776 -28744978 + MIR SINE MIR 21 130 -78 269 242 21 84 chr15 56950892 56950987 -28744767 + MIR SINE MIR 61 149 -113 377 274 113 0 chr15 56952038 56952162 -28743592 - MIR SINE MIR -109 153 16 315 309 24 0 chr15 56952320 56952443 -28743311 - MIR SINE MIR 0 262 137 331 210 20 0 chr15 56953249 56953349 -28742405 + CT-rich Low_complexity Low_complexity 1 102 0 22 35 0 0 chr15 56953641 56953670 -28742084 + AT_rich Low_complexity Low_complexity 1 29 0 351 154 0 0 chr15 56953878 56953943 -28741811 + Charlie5 DNA MER1_type 2560 2624 0 608 224 85 55 chr15 56953951 56954030 -28741724 + MER58C DNA MER1_type 1 76 -2344 1872 174 0 3 chr15 56954030 56954329 -28741425 - AluJo SINE Alu -14 298 1 608 224 85 55 chr15 56954329 56954450 -28741304 + MER58C DNA MER1_type 76 207 -8 338 296 0 80 chr15 56954451 56954576 -28741178 + L2 LINE L2 3183 3297 -16 288 0 0 0 chr15 56954577 56954609 -28741145 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 2150 125 3 0 chr15 56955332 56955643 -28740111 + AluSx SINE Alu 1 312 0 253 184 20 0 chr15 56955810 56955859 -28739895 + MIR SINE MIR 94 143 -65 330 261 138 14 chr15 56956300 56956438 -28739316 - MIR SINE MIR -89 173 19 217 259 12 49 chr15 56956972 56957053 -28738701 + CT-rich Low_complexity Low_complexity 4 81 0 321 274 39 0 chr15 56958253 56958355 -28737399 - MIR SINE MIR -85 123 18 236 187 120 0 chr15 56958966 56959041 -28736713 - MIR3 SINE MIR -52 156 73 475 262 28 0 chr15 56959310 56959417 -28736337 - MER81 DNA DNA -1 113 4 243 307 40 0 chr15 56959418 56959493 -28736261 - L2 LINE L2 -264 3049 2972 357 291 29 0 chr15 56959945 56960048 -28735706 + L2 LINE L2 2970 3075 -197 332 252 33 64 chr15 56960153 56960315 -28735439 - MIR SINE MIR -34 174 14 204 135 0 0 chr15 56960504 56960541 -28735213 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 286 264 0 99 chr15 56960757 56960878 -28734876 + MIR SINE MIR 94 202 -60 244 268 0 0 chr15 56961331 56961387 -28734367 + MIR SINE MIR 169 224 -38 186 261 0 43 chr15 56961935 56962004 -28733750 + L3b LINE CR1 1331 1396 -187 195 245 61 0 chr15 56962151 56962200 -28733554 + MIR SINE MIR 109 160 -102 233 308 11 44 chr15 56962474 56962565 -28733189 + MIR3 SINE MIR 94 181 -27 203 295 13 39 chr15 56963736 56963814 -28731940 - L3b LINE CR1 -154 1429 1354 369 0 0 0 chr15 56964807 56964848 -28730906 + (TG)n Simple_repeat Simple_repeat 1 41 0 202 314 38 50 chr15 56965181 56965340 -28730414 + L3 LINE CR1 1415 1571 -6 207 284 34 0 chr15 56966080 56966168 -28729586 + MIR SINE MIR 62 152 -56 381 343 60 35 chr15 56966418 56966785 -28728969 + L2 LINE L2 2881 3256 -16 335 22 0 22 chr15 56966788 56966833 -28728921 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 722 298 61 4 chr15 56967250 56967478 -28728276 + MIR SINE MIR 8 248 -14 213 290 149 68 chr15 56968182 56968430 -28727324 + L2 LINE L2 2917 3184 -88 191 329 0 13 chr15 56968430 56968509 -28727245 + MIR SINE MIR 59 136 -72 202 286 10 61 chr15 56969008 56969106 -28726648 - MIR SINE MIR -92 116 24 180 0 0 0 chr15 56969693 56969713 -28726041 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 189 365 35 28 chr15 56969782 56969927 -28725827 - MIR3 SINE MIR -26 182 37 1457 188 0 28 chr15 56970425 56970707 -28725047 - AluJo SINE Alu -10 302 29 332 315 246 13 chr15 56970707 56971098 -28724656 + L2 LINE L2 1788 2269 -1045 271 368 135 0 chr15 56971112 56971275 -28724479 - L2 LINE L2 -580 2734 2550 205 339 96 9 chr15 56971363 56971478 -28724276 - L2 LINE L2 -896 2418 2294 1911 149 30 0 chr15 56972066 56972367 -28723387 + AluJb SINE Alu 3 312 0 873 223 112 13 chr15 56972602 56972835 -28722919 + MIR SINE MIR 7 262 0 211 256 89 22 chr15 56972955 56973045 -28722709 - L2 LINE L2 -49 3264 3169 344 302 60 27 chr15 56973111 56973260 -28722494 - MIR SINE MIR -1 261 108 261 355 25 16 chr15 56974382 56974503 -28721251 + MIR SINE MIR 53 174 -88 563 301 104 5 chr15 56975377 56975570 -28720184 - MIR SINE MIR -17 245 34 203 250 18 36 chr15 56978197 56978253 -28717501 + MIR3 SINE MIR 102 156 -52 267 333 24 12 chr15 56978569 56978734 -28717020 + (TG)n Simple_repeat Simple_repeat 2 168 0 467 193 6 18 chr15 56978763 56978929 -28716825 + (TG)n Simple_repeat Simple_repeat 1 164 0 243 254 17 0 chr15 56979916 56979975 -28715779 + (CA)n Simple_repeat Simple_repeat 1 60 0 567 306 13 6 chr15 56980932 56981089 -28714665 - MER91B DNA MER1_type 0 190 33 233 182 23 0 chr15 56982960 56983004 -28712750 - L2 LINE L2 -2 3270 3226 245 310 90 35 chr15 56983200 56983345 -28712409 + MIR SINE MIR 78 230 -32 267 369 41 8 chr15 56984285 56984529 -28711225 - L2 LINE L2 -101 3171 2920 2050 130 51 61 chr15 56984558 56985052 -28710702 + SATR1 Satellite Satellite 1 489 0 695 269 116 14 chr15 56985804 56986020 -28709734 - MIR SINE MIR -8 254 17 210 307 11 57 chr15 56986040 56986128 -28709626 + MIR SINE MIR 109 192 -70 353 134 0 15 chr15 56986280 56986347 -28709407 + (GGA)n Simple_repeat Simple_repeat 1 66 0 265 304 72 27 chr15 56986623 56986809 -28708945 - MIR SINE MIR -54 208 13 338 360 45 22 chr15 56986970 56987192 -28708562 + L3 LINE CR1 1343 1569 -8 567 239 75 0 chr15 56988803 56988937 -28706817 - MER91A DNA MER1_type -8 188 45 929 118 0 0 chr15 56989300 56989427 -28706327 + AluJo SINE Alu 1 127 -175 841 278 32 20 chr15 56989774 56990167 -28705587 + L2 LINE L2 2738 3145 -168 829 209 0 0 chr15 56990167 56990325 -28705429 + AluJo SINE Alu 123 280 -32 379 241 113 35 chr15 56990325 56990466 -28705288 + L2 LINE L2 3162 3313 0 366 266 18 28 chr15 56990535 56990644 -28705110 - MIR3 SINE MIR -45 163 56 226 273 91 45 chr15 56991414 56991502 -28704252 + MIR3 SINE MIR 92 183 -25 1008 240 101 31 chr15 56991626 56992014 -28703740 - MER115 DNA AcHobo -2 691 277 2153 183 19 8 chr15 56993339 56993700 -28702054 + MLT1A1 LTR MaLR 1 365 0 464 250 114 0 chr15 56993966 56994098 -28701656 - MIR SINE MIR -6 256 110 1337 279 25 7 chr15 56994152 56994593 -28701161 + LTR16C LTR ERVL 42 490 -1 321 279 235 22 chr15 56995522 56995658 -28700096 + MIR SINE MIR 20 184 -78 755 263 186 11 chr15 56995706 56996268 -28699486 - L2 LINE L2 -79 3234 2590 950 275 74 27 chr15 56996285 56996701 -28699053 - MER113 DNA MER1_type? -11 510 66 2090 119 0 0 chr15 56996701 56996994 -28698760 + AluSc SINE Alu 1 293 -16 950 275 74 27 chr15 56996994 56997064 -28698690 - MER113 DNA MER1_type? -455 66 1 2225 100 0 16 chr15 56999350 56999660 -28696094 - AluSx SINE Alu -7 305 1 977 202 55 118 chr15 57000581 57000690 -28695064 + MER33 DNA MER1_type 1 115 -2470 2077 90 0 0 chr15 57000690 57000979 -28694775 + AluSx SINE Alu 19 307 0 977 202 55 118 chr15 57000979 57001214 -28694540 + MER33 DNA MER1_type 115 324 0 731 269 82 10 chr15 57001490 57001698 -28694056 + MIR SINE MIR 29 251 -11 199 329 0 14 chr15 57002349 57002422 -28693332 - MIR SINE MIR -87 121 50 338 219 125 42 chr15 57002433 57002529 -28693225 - L2 LINE L2 -8 3305 3202 283 240 125 82 chr15 57002541 57002749 -28693005 - L2 LINE L2 -212 3060 2844 418 195 12 0 chr15 57002890 57002972 -28692782 + MLT1L LTR MaLR 162 244 -371 * 489 269 13 0 chr15 57002970 57003119 -28692635 + MLT1L LTR MaLR 465 615 0 235 333 118 0 chr15 57003123 57003225 -28692529 - L2 LINE L2 -515 2799 2686 2111 137 0 0 chr15 57003226 57003532 -28692222 + AluSq SINE Alu 3 308 -5 2220 88 0 0 chr15 57003542 57003858 -28691896 + AluY SINE Alu 1 316 0 515 189 0 11 chr15 57003867 57003962 -28691792 + L1MB3 LINE L1 6089 6182 -1 374 280 57 40 chr15 57004015 57004190 -28691564 + L3 LINE CR1 1388 1565 -12 728 176 82 56 chr15 57004408 57004675 -28691079 + MER33 DNA MER1_type 1 274 -50 399 306 110 14 chr15 57005592 57005809 -28689945 - MIR SINE MIR -8 254 5 371 253 10 10 chr15 57006218 57006317 -28689437 + MIR3 SINE MIR 75 173 -35 270 264 206 26 chr15 57007093 57007248 -28688506 + MIR SINE MIR 80 262 0 437 240 50 8 chr15 57008270 57008391 -28687363 + MIR3 SINE MIR 4 129 -79 1648 234 69 64 chr15 57008393 57008927 -28686827 + MLT1F1 LTR MaLR 2 563 -4 227 274 119 0 chr15 57008928 57009012 -28686742 + MIR SINE MIR 119 212 -50 547 317 86 0 chr15 57009118 57009361 -28686393 + L1ME3A LINE L1 5680 5943 -227 391 300 55 55 chr15 57009506 57009706 -28686048 - MIR SINE MIR -8 254 55 210 319 149 11 chr15 57009689 57009783 -28685971 + MIR SINE MIR 41 147 -61 * 504 258 69 6 chr15 57010027 57010186 -28685568 - MIR SINE MIR -11 251 83 357 109 0 0 chr15 57010416 57010471 -28685283 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 320 298 41 16 chr15 57010596 57010717 -28685037 - L2 LINE L2 -217 3055 2932 483 311 99 9 chr15 57011491 57011703 -28684051 + MIR SINE MIR 20 250 -12 188 369 48 0 chr15 57012517 57012601 -28683153 - MIR SINE MIR -86 122 35 295 298 75 0 chr15 57014305 57014399 -28681355 - MIR SINE MIR -67 195 95 583 306 44 39 chr15 57016434 57016663 -28679091 - MIR SINE MIR 0 262 33 256 119 169 0 chr15 57017711 57017770 -28677984 - MIR3 SINE MIR -25 183 115 417 330 120 20 chr15 57017806 57018006 -28677748 - MIR SINE MIR -1 261 42 193 111 444 0 chr15 57020791 57020854 -28674900 + L2 LINE L2 3223 3313 0 205 336 146 9 chr15 57021757 57021867 -28673887 + MIR SINE MIR 88 212 -50 432 0 0 0 chr15 57022091 57022139 -28673615 + (TG)n Simple_repeat Simple_repeat 2 49 0 237 317 137 12 chr15 57022193 57022354 -28673400 + L2 LINE L2 2894 3074 -198 386 168 168 0 chr15 57022650 57022757 -28672997 - MIR3 SINE MIR -3 205 81 294 308 25 93 chr15 57023917 57024196 -28671558 - L2 LINE L2 -186 3086 2827 260 256 36 32 chr15 57024234 57024400 -28671354 - MIR SINE MIR -61 147 10 355 280 109 57 chr15 57025159 57025334 -28670420 + MIR SINE MIR 5 188 -74 296 248 11 0 chr15 57025439 57025517 -28670237 - MIR SINE MIR -63 145 63 803 218 40 17 chr15 57027687 57027861 -28667893 + MER5B DNA MER1_type 1 178 0 244 332 186 13 chr15 57028428 57028579 -28667175 - MIR SINE MIR -50 212 37 455 257 35 0 chr15 57028988 57029101 -28666653 + L2 LINE L2 3137 3253 -19 537 257 339 0 chr15 57029843 57030026 -28665728 - MIR SINE MIR 0 262 18 228 280 28 28 chr15 57030243 57030350 -28665404 - L2 LINE L2 -287 2985 2879 510 31 0 0 chr15 57030788 57030852 -28664902 + (TG)n Simple_repeat Simple_repeat 2 65 0 228 333 59 0 chr15 57032095 57032197 -28663557 - MIR3 SINE MIR -12 196 89 222 200 0 174 chr15 57033059 57033174 -28662580 + MIR SINE MIR 48 142 -120 309 341 187 6 chr15 57034175 57034357 -28661397 + MIR SINE MIR 47 261 -1 237 354 50 0 chr15 57034393 57034492 -28661262 + MIR SINE MIR 19 122 -86 775 260 178 21 chr15 57034596 57035099 -28660655 + MLT1H1 LTR MaLR 14 550 0 284 260 0 41 chr15 57036023 57036096 -28659658 - MIR SINE MIR -188 74 5 278 285 104 6 chr15 57036053 57036197 -28659557 + MIR SINE MIR 37 192 -16 * 208 250 48 48 chr15 57036751 57036835 -28658919 - MIR3 SINE MIR -115 93 10 256 347 8 33 chr15 57037372 57037493 -28658261 + MIR SINE MIR 28 145 -117 439 375 65 16 chr15 57037495 57037743 -28658011 - MIR SINE MIR -1 261 2 695 271 18 46 chr15 57039219 57039437 -28656317 - MIR SINE MIR -50 212 1 198 103 0 0 chr15 57039724 57039753 -28656001 + (GGA)n Simple_repeat Simple_repeat 3 31 0 183 244 0 0 chr15 57039966 57040011 -28655743 - L3 LINE CR1 -453 1124 1080 217 321 9 9 chr15 57040030 57040139 -28655615 + GA-rich Low_complexity Low_complexity 3 111 0 24 53 0 0 chr15 57040169 57040207 -28655547 + GC_rich Low_complexity Low_complexity 1 38 0 283 282 46 38 chr15 57043828 57043959 -28651795 - MIR3 SINE MIR -76 132 1 345 355 19 0 chr15 57044684 57044791 -28650963 - L1M4 LINE L1 -2956 3190 3082 180 0 0 0 chr15 57044796 57044816 -28650938 + (G)n Simple_repeat Simple_repeat 1 20 0 261 204 19 0 chr15 57145994 57146048 -28549706 + MIR SINE MIR 86 140 -68 198 239 33 0 chr15 57146284 57146376 -28549378 + GA-rich Low_complexity Low_complexity 6 100 0 192 197 28 14 chr15 57146457 57146528 -28549226 + GA-rich Low_complexity Low_complexity 1 72 0 383 310 3 20 chr15 57146617 57146913 -28548841 + G-rich Low_complexity Low_complexity 1 290 0 511 265 21 122 chr15 57146999 57147335 -28548419 + L2 LINE L2 2921 3222 -50 1036 214 148 17 chr15 57147384 57147463 -28548291 + MER58B DNA MER1_type 6 73 -2347 1757 158 0 43 chr15 57147463 57147638 -28548116 - AluJb SINE Alu -4 308 152 2163 114 3 0 chr15 57147638 57147935 -28547819 - AluSq SINE Alu -15 298 1 1757 158 0 43 chr15 57147935 57148081 -28547673 - AluJb SINE Alu -160 152 1 1036 214 148 17 chr15 57148081 57148291 -28547463 + MER58B DNA MER1_type 73 333 -8 295 182 0 125 chr15 57148580 57148618 -28547136 - L2 LINE L2 0 3313 3290 1836 205 28 11 chr15 57148618 57148974 -28546780 - MLT1A1 LTR MaLR -3 362 1 295 182 0 125 chr15 57148974 57149023 -28546731 - L2 LINE L2 -22 3291 3237 1685 106 0 98 chr15 57150595 57150870 -28544884 - AluSq SINE Alu -65 248 1 1738 148 171 3 chr15 57151324 57151681 -28544073 - MSTB LTR MaLR -9 417 1 195 284 256 10 chr15 57151777 57151876 -28543878 - MIR SINE MIR -62 146 41 1142 297 72 2 chr15 57152687 57153088 -28542666 + MER20B DNA MER1_type 13 441 -342 1411 155 0 0 chr15 57153144 57153350 -28542404 + AluJo SINE Alu 1 206 -106 280 193 0 0 chr15 57153388 57153445 -28542309 + MER20B DNA MER1_type 452 508 -275 1182 148 55 12 chr15 57153555 57153812 -28541942 + MER20B DNA MER1_type 515 782 -1 337 327 9 9 chr15 57153813 57153926 -28541828 + L2 LINE L2 3199 3311 -2 217 308 75 19 chr15 57153929 57154088 -28541666 - L2 LINE L2 -842 2472 2305 1646 180 32 0 chr15 57154793 57155104 -28540650 + L1MB7 LINE L1 5695 6015 -169 1363 256 187 8 chr15 57155120 57155628 -28540126 - L2 LINE L2 -340 2974 2376 2411 73 3 0 chr15 57155775 57156076 -28539678 + AluY SINE Alu 1 302 -9 831 57 9 0 chr15 57156176 57156282 -28539472 + AluY SINE Alu 186 292 -19 1909 158 20 0 chr15 57156282 57156580 -28539174 - AluJo SINE Alu -8 304 1 460 270 36 69 chr15 57156584 57156888 -28538866 - L1ME LINE L1 -298 5823 5530 38 0 0 0 chr15 57156918 57156956 -28538798 + AT_rich Low_complexity Low_complexity 1 38 0 2184 132 0 0 chr15 57157046 57157350 -28538404 - AluSg SINE Alu -6 304 1 2320 90 0 3 chr15 57157354 57157654 -28538100 - AluSg1 SINE Alu -10 299 1 2202 119 0 3 chr15 57157894 57158196 -28537558 - AluSx SINE Alu -11 301 1 300 264 135 27 chr15 57158352 57158500 -28537254 + L3 LINE CR1 1084 1247 -330 226 243 10 36 chr15 57158760 57158874 -28536880 + MIR SINE MIR 13 191 -71 2164 137 0 0 chr15 57159004 57159303 -28536451 - AluSx SINE Alu -13 299 1 336 376 81 17 chr15 57160178 57160412 -28535342 + L2 LINE L2 3023 3271 -1 715 240 46 20 chr15 57160412 57160613 -28535141 + L1ME1 LINE L1 5961 6332 -2 888 210 125 29 chr15 57160621 57160893 -28534861 + AluJo SINE Alu 1 298 -4 220 268 247 31 chr15 57160916 57161013 -28534741 + L2 LINE L2 3176 3293 -20 451 322 59 0 chr15 57162087 57162239 -28533515 - MIR3 SINE MIR -18 190 30 199 268 54 0 chr15 57162235 57162291 -28533463 - MIR SINE MIR -109 99 41 * 568 270 63 6 chr15 57162429 57162603 -28533151 + MIR SINE MIR 32 214 -48 291 212 197 23 chr15 57162977 57163109 -28532645 + MIR3 SINE MIR 5 159 -49 1169 201 59 28 chr15 57163207 57163496 -28532258 + AluJo SINE Alu 1 298 -4 245 152 43 0 chr15 57163650 57163696 -28532058 + Alu SINE Alu 248 295 -6 237 205 96 36 chr15 57163839 57163922 -28531832 + MIR SINE MIR 117 204 -58 547 200 0 52 chr15 57163956 57164071 -28531683 - AluJo SINE Alu -120 192 84 2467 91 3 0 chr15 57164166 57164474 -28531280 - AluSq SINE Alu -4 309 1 2488 86 3 0 chr15 57164474 57164776 -28530978 - AluSp SINE Alu -10 303 1 459 174 65 0 chr15 57165055 57165147 -28530607 - L2 LINE L2 -21 3292 3195 956 186 114 38 chr15 57165218 57165428 -28530326 - AluJo SINE Alu -3 309 84 2092 98 45 14 chr15 57165853 57166140 -28529614 + AluSp SINE Alu 1 296 -17 266 218 134 42 chr15 57166303 57166445 -28529309 + L1ME4a LINE L1 5964 6118 -3 454 296 41 51 chr15 57166547 57166699 -28529055 + MIR3 SINE MIR 1 153 -55 982 185 12 0 chr15 57166699 57166861 -28528893 + FAM SINE Alu 1 164 -11 771 177 46 51 chr15 57168461 57168636 -28527118 + FAM SINE Alu 1 49 0 895 112 8 22 chr15 57169944 57170078 -28525676 - FLAM_C SINE Alu 0 133 2 189 107 0 0 chr15 57170553 57170581 -28525173 + (TA)n Simple_repeat Simple_repeat 2 29 0 2228 82 0 0 chr15 57170581 57170851 -28524903 - AluSq SINE Alu -1 312 43 1876 124 0 4 chr15 57170938 57171205 -28524549 - AluY SINE Alu -2 309 44 282 56 0 0 chr15 57171545 57171581 -28524173 + (TC)n Simple_repeat Simple_repeat 1 36 0 215 274 0 0 chr15 57171656 57171707 -28524047 + L2 LINE L2 3263 3313 0 185 302 58 93 chr15 57171732 57171871 -28523883 + L2 LINE L2 3122 3255 -17 477 225 159 0 chr15 57172221 57172359 -28523395 + L2 LINE L2 2450 2609 -705 2076 135 3 3 chr15 57172664 57172952 -28522802 + AluJb SINE Alu 1 288 -24 1720 188 6 28 chr15 57173336 57173545 -28522209 + Charlie1b DNA MER1_type 8 207 -2554 1841 91 116 11 chr15 57173545 57173820 -28521934 - AluSc SINE Alu -5 304 1 1720 188 6 28 chr15 57173820 57173967 -28521787 + Charlie1b DNA MER1_type 207 356 -167 266 119 24 0 chr15 57173962 57174004 -28521750 + LTR8A LTR ERV1 685 727 0 * 226 156 0 22 chr15 57174210 57174255 -28521499 - AluY SINE Alu -255 44 1 1472 109 38 115 chr15 57174256 57174596 -28521158 - L1MB7 LINE L1 -45 6139 5826 2146 110 0 14 chr15 57174831 57175122 -28520632 + AluSx SINE Alu 1 287 -25 1918 141 10 29 chr15 57175608 57175920 -28519834 - AluJo SINE Alu -6 306 1 25 0 0 0 chr15 57175923 57175948 -28519806 + AT_rich Low_complexity Low_complexity 1 25 0 2163 100 14 0 chr15 57176008 57176289 -28519465 - AluSx SINE Alu -12 300 16 355 329 75 33 chr15 57176305 57176518 -28519236 + MIR SINE MIR 23 244 -18 229 186 51 0 chr15 57178237 57178296 -28517458 - MIR SINE MIR -117 145 84 436 243 132 0 chr15 57182833 57183033 -28512721 + MIR SINE MIR 4 229 -33 358 241 0 23 chr15 57185591 57185678 -28510076 + L2 LINE L2 3187 3271 -1 2092 131 7 10 chr15 57186487 57186793 -28508961 - AluY SINE Alu -6 305 1 626 220 0 0 chr15 57186944 57187053 -28508701 - FLAM_A SINE Alu -33 109 1 213 83 111 0 chr15 57188236 57188272 -28507482 - L2 LINE L2 -3 3269 3230 588 186 109 51 chr15 57188286 57188442 -28507312 + MIR SINE MIR 28 192 -70 214 295 139 8 chr15 57188485 57188607 -28507147 - L2 LINE L2 -21 3251 3114 339 240 48 10 chr15 57188881 57188985 -28506769 + MER112 DNA MER1_type 57 164 -96 868 171 7 0 chr15 57189093 57189233 -28506521 + MER8 DNA MER2_type 99 239 0 433 228 158 0 chr15 57189536 57189663 -28506091 + L2 LINE L2 3125 3271 -1 352 238 84 28 chr15 57189816 57189959 -28505795 + L1ME4a LINE L1 5744 5894 -227 412 275 56 7 chr15 57189996 57190138 -28505616 + L1ME4a LINE L1 5965 6113 -8 664 293 48 24 chr15 57190237 57190486 -28505268 - MIR SINE MIR 0 262 8 321 309 27 27 chr15 57190932 57191042 -28504712 + MIR SINE MIR 46 155 -107 566 241 229 9 chr15 57191912 57192248 -28503506 - LTR33A LTR ERVL -8 515 106 305 192 188 78 chr15 57192590 57192861 -28502893 + LTR16B LTR ERVL 1 301 -163 1778 162 3 21 chr15 57193576 57193866 -28501888 + AluJo SINE Alu 13 297 -15 2474 63 0 3 chr15 57194004 57194305 -28501449 + AluY SINE Alu 1 300 -11 2143 114 24 10 chr15 57195782 57195949 -28499805 - AluJb SINE Alu -12 300 126 2304 117 7 0 chr15 57195949 57196257 -28499497 - AluSx SINE Alu -2 310 1 2143 114 24 10 chr15 57196257 57196379 -28499375 - AluJb SINE Alu -186 126 7 327 336 75 4 chr15 57197765 57198006 -28497748 + L1ME3A LINE L1 4797 5054 -1092 1523 237 132 40 chr15 57198165 57198717 -28497037 + MLT1E2 LTR MaLR 24 626 0 482 324 52 4 chr15 57198722 57198994 -28496760 + L1ME3A LINE L1 5525 5809 -353 601 200 0 40 chr15 57199005 57199130 -28496624 + FLAM_A SINE Alu 6 125 -17 346 253 10 10 chr15 57199215 57199314 -28496440 + L1MC5 LINE L1 7687 7785 -176 2508 84 0 0 chr15 57199316 57199627 -28496127 + AluY SINE Alu 1 311 0 577 311 89 13 chr15 57199968 57200203 -28495551 + MIR SINE MIR 8 260 -2 450 171 37 6 chr15 57202882 57203006 -28492748 - L1MC4 LINE L1 -9 8033 7805 339 302 54 34 chr15 57203605 57203754 -28492000 - MIR SINE MIR -2 260 109 1310 150 14 18 chr15 57204003 57204223 -28491531 + AluSx SINE Alu 1 219 -93 1719 150 33 0 chr15 57204375 57204648 -28491106 - AluJo SINE Alu -30 282 1 611 253 89 18 chr15 57204904 57205129 -28490625 - MIR SINE MIR 0 262 22 49 52 0 0 chr15 57205732 57205809 -28489945 + AT_rich Low_complexity Low_complexity 1 77 0 1760 179 7 0 chr15 57206545 57206852 -28488902 + AluJb SINE Alu 2 310 -2 1366 201 10 23 chr15 57207015 57207314 -28488440 - AluJb SINE Alu -17 295 1 320 281 58 8 chr15 57207411 57207532 -28488222 - MARNA DNA Mariner -64 522 396 2165 84 0 0 chr15 57209987 57210291 -28485463 - AluY SINE Alu 0 304 1 2239 181 10 30 chr15 57210643 57211047 -28484707 + MSTD LTR MaLR 1 396 0 2101 84 53 0 chr15 57211099 57211383 -28484371 + AluSp SINE Alu 1 299 -14 696 202 31 0 chr15 57211405 57211534 -28484220 + FLAM_A SINE Alu 1 133 0 1204 201 54 22 chr15 57211594 57211872 -28483882 + L1ME3A LINE L1 5879 6165 -5 2050 111 14 0 chr15 57212658 57212955 -28482799 + AluSx SINE Alu 1 301 -11 1162 214 82 69 chr15 57213125 57213525 -28482229 + L1MC5 LINE L1 7274 7682 -279 2308 70 0 7 chr15 57213525 57213823 -28481931 - AluY SINE Alu -15 296 1 1162 214 82 69 chr15 57213823 57213885 -28481869 + L1MC5 LINE L1 7682 7742 -219 544 223 46 85 chr15 57213901 57214206 -28481548 + L1MC5 LINE L1 7632 7924 -37 765 265 75 78 chr15 57214647 57214774 -28480980 + L1ME1 LINE L1 5397 5523 -639 2049 84 3 30 chr15 57214774 57215071 -28480683 - AluSx SINE Alu -19 293 5 765 265 75 78 chr15 57215071 57215361 -28480393 + L1ME1 LINE L1 5523 5818 -344 488 279 16 8 chr15 57215364 57215486 -28480268 - L2 LINE L2 0 3313 3191 2136 122 0 0 chr15 57215737 57216041 -28479713 + AluSx SINE Alu 1 304 -8 3850 241 70 35 chr15 57216159 57217536 -28478218 + L1MEc LINE L1 1 1426 -4970 1193 257 29 9 chr15 57217788 57218138 -28477616 + L1ME1 LINE L1 5805 6161 -5 22 0 0 0 chr15 57218677 57218699 -28477055 + AT_rich Low_complexity Low_complexity 1 22 0 446 335 16 0 chr15 57220120 57220305 -28475449 + L1MC/D LINE L1 5616 5803 -2005 773 167 31 0 chr15 57220814 57220961 -28474793 + MSTC LTR MaLR 1 151 -245 1007 230 63 93 chr15 57220982 57221252 -28474502 + MLT1D LTR MaLR 206 505 0 391 276 40 26 chr15 57222606 57222758 -28472996 - L2 LINE L2 -2 3311 3158 188 348 34 17 chr15 57222947 57223065 -28472689 - L2 LINE L2 -479 2835 2716 195 262 0 0 chr15 57223266 57223308 -28472446 + MIR SINE MIR 86 127 -81 590 270 104 14 chr15 57224194 57224293 -28471461 - MIR SINE MIR -5 257 168 312 27 0 0 chr15 57224293 57224330 -28471424 + (CA)n Simple_repeat Simple_repeat 2 38 0 590 270 104 14 chr15 57224330 57224441 -28471313 - MIR SINE MIR -94 168 28 928 190 0 6 chr15 57224945 57225119 -28470635 + FRAM SINE Alu 2 174 -2 1047 111 11 11 chr15 57225128 57225275 -28470479 + (GAAA)n Simple_repeat Simple_repeat 1 327 0 1047 111 11 11 chr15 57225275 57225455 -28470299 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 915 223 99 0 chr15 57226376 57226609 -28469145 - MIR SINE MIR -3 259 4 543 233 39 39 chr15 57226892 57227021 -28468733 + MIR SINE MIR 20 148 -60 945 197 6 0 chr15 57227930 57228108 -28467646 - AluJb SINE Alu -1 311 133 1902 155 22 91 chr15 57228108 57228290 -28467464 + L1MB7 LINE L1 5765 5958 -226 1479 130 58 38 chr15 57228290 57228582 -28467172 + AluJo SINE Alu 1 298 -14 1902 155 22 91 chr15 57228582 57228850 -28466904 + L1MB7 LINE L1 5958 6184 0 742 154 8 8 chr15 57228863 57228993 -28466761 + FLAM_A SINE Alu 11 140 -2 346 296 97 34 chr15 57229108 57229284 -28466470 + MIR SINE MIR 60 246 -16 433 263 66 0 chr15 57229948 57230100 -28465654 + L1MC4a LINE L1 5836 5997 -1811 2208 86 0 20 chr15 57230469 57230773 -28464981 - AluSq SINE Alu -15 298 1 1387 149 120 33 chr15 57231037 57231313 -28464441 - AluJb SINE Alu -12 300 1 608 81 0 12 chr15 57231705 57231791 -28463963 - AluJ/FRAM SINE Alu -12 300 216 347 329 91 14 chr15 57233766 57233909 -28461845 + L2 LINE L2 3160 3313 0 369 255 67 9 chr15 57235407 57235553 -28460201 + MLT1J LTR MaLR 45 261 -337 248 263 50 12 chr15 57235686 57235766 -28459988 + MLT1L LTR MaLR 515 597 -18 200 163 23 0 chr15 57235800 57235843 -28459911 + (TA)n Simple_repeat Simple_repeat 2 45 0 259 282 14 0 chr15 57236751 57236822 -28458932 + L2 LINE L2 2982 3053 -260 2647 240 57 11 chr15 57239104 57239846 -28455908 + L1ME1 LINE L1 5376 6131 -35 248 316 20 20 chr15 57240305 57240403 -28455351 - L2 LINE L2 0 3272 3175 257 229 115 0 chr15 57240621 57240682 -28455072 + L2 LINE L2 3205 3272 0 243 0 0 0 chr15 57241227 57241254 -28454500 + (T)n Simple_repeat Simple_repeat 1 27 0 360 192 141 10 chr15 57241254 57241353 -28454401 - MIR SINE MIR -67 141 30 2094 87 7 14 chr15 57241910 57242199 -28453555 + AluSx SINE Alu 11 297 -15 369 163 23 35 chr15 57242530 57242616 -28453138 + MER3 DNA MER1_type 33 117 -92 434 194 145 8 chr15 57242620 57242744 -28453010 + MER3 DNA MER1_type 2484 2624 0 190 299 30 30 chr15 57243595 57243662 -28452092 + L2 LINE L2 2990 3056 -257 187 364 100 9 chr15 57243754 57243864 -28451890 + L2 LINE L2 3139 3258 -14 252 261 15 0 chr15 57244570 57244635 -28451119 + L1ME LINE L1 5590 5655 -466 277 345 0 0 chr15 57244679 57244763 -28450991 - L2 LINE L2 -1 3312 3229 1495 155 32 14 chr15 57244896 57245173 -28450581 + AluJb SINE Alu 1 282 -30 2139 101 0 0 chr15 57245175 57245462 -28450292 + AluSq SINE Alu 1 287 -26 1752 176 7 0 chr15 57245504 57245800 -28449954 + AluSq SINE Alu 1 298 -15 1852 153 0 0 chr15 57245831 57246118 -28449636 + AluJb SINE Alu 1 287 -25 184 30 61 0 chr15 57246118 57246151 -28449603 + (TA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr15 57246251 57246316 -28449438 + AT_rich Low_complexity Low_complexity 1 65 0 295 258 119 7 chr15 57247031 57247182 -28448572 - L1ME4a LINE L1 -5 6116 5949 278 283 33 11 chr15 57247301 57247393 -28448361 - MIR SINE MIR -1 261 168 789 271 77 18 chr15 57247418 57247639 -28448115 + MIR SINE MIR 25 258 -4 265 234 177 51 chr15 57248422 57248580 -28447174 + L2 LINE L2 2578 2755 -559 371 299 49 33 chr15 57250964 57251148 -28444606 + MER5A DNA MER1_type 1 187 -2 269 182 91 52 chr15 57251717 57251794 -28443960 + MIR3 SINE MIR 112 191 -17 359 269 13 0 chr15 57252797 57252875 -28442879 + L2 LINE L2 3234 3312 -1 404 19 19 0 chr15 57252909 57252962 -28442792 + (CA)n Simple_repeat Simple_repeat 1 54 0 1128 205 32 38 chr15 57254080 57254271 -28441483 + MLT1A1 LTR MaLR 1 144 -221 231 103 0 0 chr15 57254271 57254310 -28441444 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1128 205 32 38 chr15 57254310 57254531 -28441223 + MLT1A1 LTR MaLR 144 365 0 300 252 153 9 chr15 57254733 57254844 -28440910 + MIR SINE MIR 48 174 -88 2376 109 0 0 chr15 57255306 57255618 -28440136 - AluSx SINE Alu 0 312 1 655 130 0 57 chr15 57256889 57257012 -28438742 - L1MC4 LINE L1 -6 8036 7921 261 292 28 0 chr15 57257012 57257084 -28438670 + CT-rich Low_complexity Low_complexity 1 74 0 2239 109 13 10 chr15 57257121 57257424 -28438330 - AluSx SINE Alu -8 304 1 1258 221 28 0 chr15 57257425 57257715 -28438039 - L1MC4 LINE L1 -982 7060 6763 2308 101 3 3 chr15 57257968 57258264 -28437490 - AluSx SINE Alu -16 296 1 1798 183 0 0 chr15 57258454 57258761 -28436993 - AluJo SINE Alu 0 307 1 196 269 43 6 chr15 57259325 57259408 -28436346 + MIR SINE MIR 16 101 -107 2308 100 0 0 chr15 57259414 57259704 -28436050 - AluSx SINE Alu -22 290 1 647 245 103 5 chr15 57259930 57260134 -28435620 - MIR SINE MIR 0 262 39 1953 152 19 0 chr15 57260266 57260588 -28435166 - L1MB3 LINE L1 -7 6176 5849 778 167 40 0 chr15 57260920 57261046 -28434708 + FLAM_A SINE Alu 3 133 0 1299 146 0 0 chr15 57261103 57261288 -28434466 + AluSg/x SINE Alu 123 307 -3 200 273 36 0 chr15 57261553 57261608 -28434146 - MIR SINE MIR -116 146 90 201 244 0 0 chr15 57262940 57262981 -28432773 + CT-rich Low_complexity Low_complexity 5 45 0 396 230 137 22 chr15 57264428 57264567 -28431187 + MLT1F1 LTR MaLR 5 159 -383 1466 183 105 17 chr15 57264725 57265086 -28430668 + MLT1F1 LTR MaLR 175 567 0 2474 78 3 0 chr15 57265836 57266142 -28429612 + AluSx SINE Alu 1 307 -5 953 221 48 14 chr15 57267670 57267878 -28427876 - MIR SINE MIR -41 221 7 261 279 90 41 chr15 57268103 57268225 -28427529 - L2 LINE L2 -8 3264 3137 256 275 12 0 chr15 57268746 57268826 -28426928 + L1M4 LINE L1 3951 4031 -2115 826 95 0 60 chr15 57268847 57268963 -28426791 - FLAM_C SINE Alu -16 127 19 2090 240 85 55 chr15 57268984 57269416 -28426338 + L1M4 LINE L1 4032 4449 -1697 1900 139 7 17 chr15 57269416 57269740 -28426014 + AluJb SINE Alu 1 321 0 2090 240 85 55 chr15 57269740 57270223 -28425531 + L1M4 LINE L1 4449 4976 -1170 617 202 101 0 chr15 57270812 57270941 -28424813 + MIR SINE MIR 50 191 -71 2114 133 0 16 chr15 57271058 57271375 -28424379 - AluSx SINE Alu 0 312 1 303 28 0 0 chr15 57272589 57272625 -28423129 + (CA)n Simple_repeat Simple_repeat 1 36 0 543 285 77 37 chr15 57273841 57274139 -28421615 + MLT1L LTR MaLR 2 311 -304 2454 78 7 0 chr15 57274259 57274566 -28421188 - AluY SINE Alu -2 309 1 531 253 83 96 chr15 57275809 57276069 -28419685 + L1MC4a LINE L1 5756 6011 -1797 2175 103 41 0 chr15 57276069 57276361 -28419393 + AluSx SINE Alu 1 304 -8 531 253 83 96 chr15 57276361 57276519 -28419235 + L1MC4a LINE L1 6011 6169 -1639 738 190 0 0 chr15 57276536 57276652 -28419102 + FLAM_A SINE Alu 1 116 -17 320 291 124 62 chr15 57276726 57276936 -28418818 + L1MC4a LINE L1 6155 6377 -1431 193 29 59 0 chr15 57276952 57276986 -28418768 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1395 155 12 48 chr15 57277005 57277257 -28418497 - AluJo SINE Alu -69 243 1 434 259 48 7 chr15 57277641 57277788 -28417966 + L1MEc LINE L1 121 273 -6123 248 154 19 0 chr15 57277794 57277846 -28417908 + GA-rich Low_complexity Low_complexity 1 53 0 726 298 98 29 chr15 57277846 57278256 -28417498 + L1MEc LINE L1 252 689 -5707 791 267 82 30 chr15 57278256 57278798 -28416956 + L1MEc LINE L1 1118 1683 -4532 * 1439 22 0 0 chr15 57278795 57278975 -28416779 - L1PA3 LINE L1 -3627 2519 2340 24239 26 0 1 chr15 57278975 57282610 -28413144 + L1PA3 LINE L1 2511 6155 0 25 0 0 0 chr15 57282610 57282635 -28413119 + AT_rich Low_complexity Low_complexity 1 25 0 388 278 76 25 chr15 57282703 57282901 -28412853 + L1MEc LINE L1 1658 1865 -4531 964 147 0 7 chr15 57282901 57283037 -28412717 + AluJo SINE Alu 1 135 -177 347 178 0 27 chr15 57283041 57283114 -28412640 - L1MEc LINE L1 -4463 1933 1863 572 204 0 0 chr15 57283121 57283224 -28412530 - AluJo/FRAM SINE Alu -3 309 207 343 45 0 0 chr15 57283224 57283268 -28412486 + AluJ/F(R)AM SINE Alu 161 204 -107 2219 74 4 0 chr15 57283368 57283637 -28412117 - AluSx SINE Alu -42 270 1 388 282 41 12 chr15 57284052 57284222 -28411532 - L1ME3A LINE L1 -232 5938 5764 290 264 92 0 chr15 57284317 57284404 -28411350 - MIR SINE MIR -77 185 91 2281 83 3 0 chr15 57284502 57284791 -28410963 - AluY SINE Alu 0 311 22 226 179 0 0 chr15 57285654 57285693 -28410061 + MIR SINE MIR 56 94 -168 199 241 278 19 chr15 57285664 57285772 -28409982 + MIR3 SINE MIR 67 202 -6 * 1796 151 3 23 chr15 57285789 57286094 -28409660 + AluJo SINE Alu 13 311 -1 504 203 65 0 chr15 57286107 57286230 -28409524 - MIR SINE MIR -48 214 84 322 246 23 29 chr15 57286881 57287052 -28408702 + C-rich Low_complexity Low_complexity 3 172 0 23 0 0 0 chr15 57287103 57287126 -28408628 + GC_rich Low_complexity Low_complexity 1 23 0 316 252 36 18 chr15 57287221 57287332 -28408422 + L1ME2 LINE L1 6035 6147 -17 234 273 0 0 chr15 57287398 57287453 -28408301 + L2 LINE L2 3217 3271 -1 678 204 24 71 chr15 57287489 57287700 -28408054 - L2 LINE L2 0 3313 3113 1614 78 16 39 chr15 57287809 57287909 -28407845 + L1MA3 LINE L1 6054 6155 -150 2417 82 3 0 chr15 57287909 57288203 -28407551 + AluSp SINE Alu 4 298 -15 1614 78 16 39 chr15 57288203 57288360 -28407394 + L1MA3 LINE L1 6155 6305 0 236 356 39 11 chr15 57288367 57288547 -28407207 - L2 LINE L2 -198 3115 2931 1055 248 15 30 chr15 57288861 57289127 -28406627 + MIR SINE MIR 1 262 0 437 208 31 88 chr15 57289702 57289861 -28405893 + L2 LINE L2 3121 3270 -43 2199 132 0 0 chr15 57289980 57290290 -28405464 + AluSg SINE Alu 1 310 0 1948 135 10 10 chr15 57290566 57290869 -28404885 - AluJo SINE Alu -9 303 1 301 300 15 54 chr15 57292084 57292214 -28403540 + MIR3 SINE MIR 63 187 -21 2003 145 28 0 chr15 57292911 57293200 -28402554 + AluJb SINE Alu 1 297 -15 622 289 52 0 chr15 57293202 57293375 -28402379 + MIR SINE MIR 79 260 -2 190 219 102 78 chr15 57293375 57293503 -28402251 - L2 LINE L2 -4 3268 3138 376 275 90 79 chr15 57294465 57294654 -28401100 + MIR SINE MIR 54 244 -18 192 182 0 0 chr15 57294674 57294707 -28401047 + MIR SINE MIR 116 148 -60 1141 292 25 17 chr15 57295946 57296350 -28399404 + L1MC4a LINE L1 5548 5954 -1854 227 152 0 0 chr15 57296355 57296388 -28399366 + Alu SINE Alu 1 33 -267 970 175 0 12 chr15 57296389 57296549 -28399205 + AluJb SINE Alu 155 312 0 364 293 126 6 chr15 57296552 57296726 -28399028 + L1MC4a LINE L1 5926 6120 -1688 1993 166 0 3 chr15 57296793 57297094 -28398660 + AluSx SINE Alu 1 300 -12 329 230 68 0 chr15 57297102 57297176 -28398578 - L2 LINE L2 -12 3260 3182 397 221 179 29 chr15 57297785 57297925 -28397829 - MIR SINE MIR -89 173 13 1709 182 79 12 chr15 57298401 57298818 -28396936 - Charlie4a DNA MER1_type -6 502 58 1990 137 6 35 chr15 57298833 57299146 -28396608 - AluJo SINE Alu -8 304 1 290 266 89 82 chr15 57299371 57299505 -28396249 - MIR SINE MIR -20 242 105 1770 118 0 0 chr15 57299505 57299750 -28396004 + AluY SINE Alu 65 309 -2 290 266 89 82 chr15 57299750 57299773 -28395981 - MIR SINE MIR -157 105 84 402 21 0 0 chr15 57299932 57299979 -28395775 + (CAT)n Simple_repeat Simple_repeat 1 47 0 272 246 116 0 chr15 57300059 57300128 -28395626 - MIR SINE MIR -149 113 37 549 215 81 49 chr15 57300143 57300366 -28395388 - L1ME3A LINE L1 0 6170 5941 723 140 0 0 chr15 57300366 57300473 -28395281 - FLAM_C SINE Alu -15 128 22 313 165 13 76 chr15 57300663 57300742 -28395012 - MIR SINE MIR -70 192 119 782 288 141 21 chr15 57301020 57301447 -28394307 + L2 LINE L2 2834 3311 -2 456 200 218 0 chr15 57302368 57302478 -28393276 + MER94 DNA DNA 1 134 0 791 210 62 0 chr15 57302604 57302766 -28392988 + MER45A DNA AcHobo 1 172 -6 230 274 0 0 chr15 57302983 57303034 -28392720 - MER91A DNA MER1_type -145 51 1 264 277 46 72 chr15 57303728 57303923 -28391831 - L2 LINE L2 -212 3060 2871 218 366 56 12 chr15 57304034 57304195 -28391559 - L2 LINE L2 -594 2720 2553 735 232 6 17 chr15 57304397 57304574 -28391180 + MIR SINE MIR 88 262 0 188 143 0 0 chr15 57304588 57304616 -28391138 - L2 LINE L2 -35 3237 3210 2610 241 84 32 chr15 57304754 57305138 -28390616 + L1ME3 LINE L1 4783 5146 -1016 2083 108 0 14 chr15 57305138 57305457 -28390297 - AluSx SINE Alu 0 312 1 2610 241 84 32 chr15 57305457 57305813 -28389941 + L1ME3 LINE L1 5146 5482 -680 1897 136 7 20 chr15 57305813 57306114 -28389640 - AluSq SINE Alu -15 298 2 2610 241 84 32 chr15 57306114 57306690 -28389064 + L1ME3 LINE L1 5482 6161 -1 826 163 47 6 chr15 57306816 57306988 -28388766 - MER96B DNA MER1_type? -238 179 1 372 267 233 17 chr15 57308080 57308256 -28387498 + MIR SINE MIR 25 238 -24 2042 122 13 10 chr15 57308323 57308627 -28387127 - AluSx SINE Alu -7 305 1 1947 121 0 45 chr15 57308628 57308941 -28386813 - AluSx SINE Alu -13 299 1 816 267 56 94 chr15 57308959 57309562 -28386192 + L2 LINE L2 2729 3311 -2 2112 118 3 0 chr15 57309730 57310036 -28385718 + AluSx SINE Alu 1 307 -5 218 345 24 0 chr15 57310040 57310124 -28385630 - MIR3 SINE MIR -14 194 109 198 0 0 0 chr15 57311023 57311045 -28384709 + (TGG)n Simple_repeat Simple_repeat 3 24 0 362 222 86 12 chr15 57311221 57311284 -28384470 + MER53 DNA DNA 16 73 -116 1705 168 19 16 chr15 57311284 57311594 -28384160 + AluJb SINE Alu 1 311 -1 362 222 86 12 chr15 57311594 57311692 -28384062 + MER53 DNA DNA 73 189 0 199 133 0 0 chr15 57311698 57311728 -28384026 + MIR SINE MIR 116 145 -63 267 79 0 0 chr15 57311851 57311889 -28383865 + (TGG)n Simple_repeat Simple_repeat 2 39 0 263 374 0 16 chr15 57315596 57315719 -28380035 - MIR SINE MIR -67 141 21 264 294 163 0 chr15 57315968 57316060 -28379694 + L2 LINE L2 2928 3034 -238 373 245 20 71 chr15 57316168 57316261 -28379493 - MIR SINE MIR -54 208 119 2298 72 0 23 chr15 57316261 57316566 -28379188 + AluY SINE Alu 1 298 -13 373 245 20 71 chr15 57316566 57316642 -28379112 - MIR SINE MIR -143 119 41 2069 88 9 94 chr15 57317206 57317546 -28378208 + AluSq SINE Alu 3 313 0 205 238 131 12 chr15 57317978 57318062 -28377692 + L2 LINE L2 2658 2751 -563 739 237 18 0 chr15 57318772 57318941 -28376813 + MIR SINE MIR 81 252 -10 1132 139 6 0 chr15 57318976 57319141 -28376613 + FRAM SINE Alu 1 166 0 395 244 11 0 chr15 57319938 57320028 -28375726 + MER5A DNA MER1_type 16 106 -83 368 225 34 0 chr15 57320322 57320411 -28375343 - MIR SINE MIR -125 137 46 471 306 31 25 chr15 57320907 57321103 -28374651 - MIR SINE MIR -19 243 47 1647 140 28 28 chr15 57321607 57321893 -28373861 + AluJo SINE Alu 9 294 -18 587 264 55 36 chr15 57322233 57322453 -28373301 - MIR SINE MIR 0 262 39 2311 69 0 0 chr15 57322833 57323123 -28372631 - AluY SINE Alu 0 311 22 213 319 97 9 chr15 57323287 57323400 -28372354 + MIR SINE MIR 23 145 -117 934 209 0 52 chr15 57323969 57324180 -28371574 + AluJo SINE Alu 1 200 -112 307 89 0 0 chr15 57324180 57324225 -28371529 + FLAM SINE Alu 87 131 -2 272 325 108 0 chr15 57324243 57324400 -28371354 + L1ME4a LINE L1 3739 3912 -2234 1902 125 3 14 chr15 57324565 57324875 -28370879 - AluSx SINE Alu 0 307 1 1282 93 33 0 chr15 57324986 57325168 -28370586 - AluSg/x SINE Alu 0 312 125 1462 151 32 121 chr15 57325259 57325491 -28370263 - MER2 DNA MER2_type -6 339 151 1754 145 13 26 chr15 57325491 57325794 -28369960 + AluJo SINE Alu 1 299 -13 1462 151 32 121 chr15 57325794 57325933 -28369821 - MER2 DNA MER2_type -194 151 1 776 161 17 0 chr15 57326114 57326232 -28369522 + FLAM_C SINE Alu 2 121 -22 527 361 17 30 chr15 57326240 57326536 -28369218 + L1ME4a LINE L1 4365 4656 -1490 261 0 0 0 chr15 57326561 57326590 -28369164 + (A)n Simple_repeat Simple_repeat 1 29 0 366 263 160 25 chr15 57326907 57327140 -28368614 + MER102b DNA MER1_type 64 341 0 517 262 172 20 chr15 57327205 57327606 -28368148 + L1ME4a LINE L1 5591 6052 -69 2206 76 7 0 chr15 57327635 57327924 -28367830 + AluSg SINE Alu 9 299 -11 3326 121 45 77 chr15 57327966 57328215 -28367539 - L1MB3 LINE L1 0 6183 5928 1589 123 4 0 chr15 57328215 57328443 -28367311 + AluSx SINE Alu 1 229 -83 3326 121 45 77 chr15 57328443 57328832 -28366922 - L1MB3 LINE L1 -255 5928 5565 2161 94 0 20 chr15 57328889 57329187 -28366567 - AluSg SINE Alu -18 292 1 1749 164 0 10 chr15 57329222 57329520 -28366234 - AluJb SINE Alu -17 295 1 378 278 35 0 chr15 57329536 57329680 -28366074 + L1ME4a LINE L1 5950 6098 -23 2919 81 14 0 chr15 57330768 57331138 -28364616 + THE1C LTR MaLR 1 375 0 265 322 35 9 chr15 57331525 57331640 -28364114 - L2 LINE L2 -234 3038 2921 373 189 63 21 chr15 57331921 57332016 -28363738 - MIR SINE MIR -80 182 84 289 241 277 15 chr15 57332625 57332762 -28362992 + MIR SINE MIR 20 192 -70 191 114 29 0 chr15 57332959 57332994 -28362760 + (CCCCAG)n Simple_repeat Simple_repeat 6 41 0 298 248 62 35 chr15 57333509 57333622 -28362132 - L2 LINE L2 -1035 2279 2164 994 209 6 0 chr15 57334883 57335065 -28360689 + MER5A DNA MER1_type 1 183 -6 497 285 6 48 chr15 57335070 57335235 -28360519 + MER5B DNA MER1_type 19 176 -2 414 352 57 6 chr15 57335255 57335453 -28360301 - MIR SINE MIR -27 235 30 2100 104 3 7 chr15 57335467 57335754 -28360000 - AluSx SINE Alu -20 292 7 182 296 0 0 chr15 57335928 57335972 -28359782 + L2 LINE L2 3227 3270 -2 377 254 68 17 chr15 57336298 57336416 -28359338 + MIR SINE MIR 77 200 -62 258 349 68 0 chr15 57336840 57336972 -28358782 + L2 LINE L2 2920 3060 -212 374 306 77 33 chr15 57337128 57337311 -28358443 - MIR SINE MIR -70 192 2 2147 97 0 55 chr15 57337711 57338041 -28357713 + AluSx SINE Alu 1 312 0 422 250 117 0 chr15 57339135 57339255 -28356499 + MIR SINE MIR 117 250 -12 212 267 129 44 chr15 57339496 57339721 -28356033 - L2 LINE L2 -205 3067 2824 364 303 0 0 chr15 57340286 57340395 -28355359 - MIR SINE MIR -118 144 36 22 0 0 0 chr15 57340429 57340451 -28355303 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 57340535 57340566 -28355188 + GC_rich Low_complexity Low_complexity 1 31 0 196 315 82 0 chr15 57341074 57341220 -28354534 + MIR3 SINE MIR 25 182 -26 907 153 63 3 chr15 57341421 57341589 -28354165 - MER34 LTR ERV1 0 641 380 2072 100 3 17 chr15 57341594 57341894 -28353860 - AluSx SINE Alu -16 296 1 785 163 0 50 chr15 57341894 57342035 -28353719 - AluJo SINE Alu -177 135 2 851 103 15 7 chr15 57342036 57342172 -28353582 - MER34 LTR ERV1 -404 138 2 496 216 90 0 chr15 57342238 57342372 -28353382 - MIR SINE MIR -81 181 36 31 0 0 0 chr15 57342416 57342447 -28353307 + AT_rich Low_complexity Low_complexity 1 31 0 843 147 0 0 chr15 57342447 57342563 -28353191 - FLAM_C SINE Alu -15 118 3 559 264 27 0 chr15 57342624 57342772 -28352982 - MER5A DNA MER1_type -30 159 8 2141 101 7 3 chr15 57343518 57343815 -28351939 + AluSq SINE Alu 1 298 -15 454 318 23 0 chr15 57343894 57344026 -28351728 - MIR SINE MIR -115 147 13 471 258 103 38 chr15 57344098 57344311 -28351443 - MIR SINE MIR 0 262 36 1908 85 103 0 chr15 57344319 57344600 -28351154 - AluSg SINE Alu 0 310 1 2239 198 20 16 chr15 57345085 57345635 -28350119 + L1M4 LINE L1 2181 2732 -3414 389 205 146 34 chr15 57345617 57345829 -28349925 + L1MC4 LINE L1 7038 7255 -728 * 264 349 0 0 chr15 57345869 57345952 -28349802 + L1MC4 LINE L1 7378 7460 -582 1168 170 31 111 chr15 57345984 57346308 -28349446 + MLT1C LTR MaLR 1 298 -169 220 311 34 25 chr15 57346591 57346710 -28349044 - MER5B DNA MER1_type 0 178 59 204 162 27 0 chr15 57348419 57348456 -28347298 + L2 LINE L2 3216 3253 -19 469 301 96 6 chr15 57349406 57349562 -28346192 - MIR SINE MIR -70 192 23 180 352 132 13 chr15 57349638 57349797 -28345957 + MIR SINE MIR 66 243 -19 266 269 76 42 chr15 57350478 57350597 -28345157 + MIR SINE MIR 26 148 -60 2211 244 39 26 chr15 57350597 57350917 -28344837 + L1MB7 LINE L1 5499 5813 -371 1666 162 28 0 chr15 57350917 57351201 -28344553 + AluJb SINE Alu 1 292 -20 2211 244 39 26 chr15 57351201 57351544 -28344210 + L1MB7 LINE L1 5813 6171 -13 1735 138 0 41 chr15 57351570 57351889 -28343865 + AluSx SINE Alu 7 312 0 1856 136 0 29 chr15 57352180 57352489 -28343265 - AluSx SINE Alu -12 300 1 2255 93 0 3 chr15 57352496 57352796 -28342958 - AluSx SINE Alu -13 299 1 246 98 24 0 chr15 57353238 57353279 -28342475 + (TTTTC)n Simple_repeat Simple_repeat 4 180 0 242 182 0 0 chr15 57353279 57353321 -28342433 - AluJo SINE Alu 0 339 257 * 1352 153 0 23 chr15 57353318 57353533 -28342221 - AluJo SINE Alu -102 210 1 690 167 50 0 chr15 57353562 57353682 -28342072 + FLAM_C SINE Alu 2 127 -16 328 135 0 0 chr15 57353717 57353769 -28341985 + L1MA8 LINE L1 6166 6217 -74 1148 142 11 23 chr15 57353769 57353945 -28341809 - AluJo SINE Alu -138 174 1 225 248 99 8 chr15 57355131 57355252 -28340502 + L2 LINE L2 2918 3049 -223 2204 107 3 13 chr15 57356319 57356652 -28339102 - AluSc SINE Alu 0 309 1 832 271 44 36 chr15 57356849 57357214 -28338540 + L1ME4a LINE L1 5542 5909 -212 250 228 0 0 chr15 57358309 57358366 -28337388 + MIR3 SINE MIR 112 168 -40 220 289 66 0 chr15 57358913 57358989 -28336765 + L2 LINE L2 3154 3234 -38 396 301 51 13 chr15 57359678 57359834 -28335920 + MIR SINE MIR 64 225 -37 220 300 36 18 chr15 57362481 57362591 -28333163 + MIR SINE MIR 40 151 -57 263 320 48 10 chr15 57363085 57363188 -28332566 - MER91C DNA MER1_type -33 107 1 538 146 22 0 chr15 57365852 57365941 -28329813 - L1MC5 LINE L1 -1178 6783 6693 1835 184 0 3 chr15 57366030 57366335 -28329419 + AluJo SINE Alu 1 304 -8 728 140 35 0 chr15 57367876 57368019 -28327735 + L1MA4A LINE L1 6152 6299 -4 21 36 0 0 chr15 57370985 57371013 -28324741 + GC_rich Low_complexity Low_complexity 1 28 0 668 180 43 7 chr15 57371202 57371341 -28324413 - FRAM SINE Alu -1 175 32 182 286 98 54 chr15 57371431 57371543 -28324211 - MIR SINE MIR -70 138 22 308 278 76 56 chr15 57373167 57373311 -28322443 - L2 LINE L2 -3 3269 3123 504 264 109 25 chr15 57373357 57373558 -28322196 + MIR SINE MIR 33 250 -12 359 280 93 40 chr15 57374699 57374849 -28320905 + MIR3 SINE MIR 2 159 -49 471 305 7 0 chr15 57374883 57375024 -28320730 + L1MC4a LINE L1 5727 5868 -1940 302 271 178 8 chr15 57375120 57375249 -28320505 + L1ME4a LINE L1 5968 6118 -3 250 276 0 13 chr15 57375263 57375339 -28320415 - MER5B DNA MER1_type -78 100 26 223 278 19 0 chr15 57375347 57375401 -28320353 + MIR3 SINE MIR 151 205 -3 588 272 7 11 chr15 57375591 57375753 -28320001 - MIR SINE MIR -62 146 8 763 250 66 0 chr15 57375886 57376098 -28319656 - MIR SINE MIR 0 262 37 228 179 42 17 chr15 57377010 57377126 -28318628 - MER91A DNA MER1_type -16 180 1 985 275 51 20 chr15 57377213 57377625 -28318129 + MLT1K LTR MaLR 102 546 -42 253 257 4 181 chr15 57377977 57378034 -28317720 + L2 LINE L2 2992 3057 -215 1803 190 200 6 chr15 57378034 57378528 -28317226 + MLT1G LTR MaLR 1 590 0 253 257 4 181 chr15 57378528 57378707 -28317047 + L2 LINE L2 3057 3186 -86 258 161 32 0 chr15 57379218 57379311 -28316443 + G-rich Low_complexity Low_complexity 6 101 0 297 275 145 0 chr15 57379782 57379913 -28315841 - MIR SINE MIR -12 250 101 284 203 63 13 chr15 57380058 57380137 -28315617 + MIR SINE MIR 39 121 -141 400 174 0 113 chr15 57380973 57381088 -28314666 + LTR33A LTR ERVL 409 510 -13 674 255 80 109 chr15 57381148 57381525 -28314229 - L1MC4a LINE L1 -1866 5942 5577 462 234 84 0 chr15 57381588 57381695 -28314059 + L2 LINE L2 3152 3267 -5 1393 241 81 29 chr15 57381963 57382373 -28313381 + LTR16A LTR ERVL 20 450 0 1615 145 36 63 chr15 57382403 57382706 -28313048 - AluJo SINE Alu -12 300 6 2018 131 47 0 chr15 57382742 57383039 -28312715 - AluSq SINE Alu -2 311 1 901 180 50 65 chr15 57383153 57383210 -28312544 - Charlie4a DNA MER1_type -1507 454 398 1869 183 3 3 chr15 57383210 57383522 -28312232 + AluJb SINE Alu 1 312 0 901 180 50 65 chr15 57383522 57383626 -28312128 - Charlie4a DNA MER1_type -1563 398 294 2317 104 7 3 chr15 57383626 57383924 -28311830 + AluSx SINE Alu 1 299 -13 901 180 50 65 chr15 57383924 57384039 -28311715 - Charlie4a DNA MER1_type -1667 294 181 300 100 20 20 chr15 57384141 57384191 -28311563 + AluSp/q SINE Alu 198 247 -56 1034 177 62 5 chr15 57384193 57384385 -28311369 + AluJb SINE Alu 85 287 -25 1920 139 86 12 chr15 57384477 57384816 -28310938 - THE1B LTR MaLR 0 364 1 664 276 99 67 chr15 57386098 57386291 -28309463 - L2 LINE L2 0 3313 3128 467 128 0 0 chr15 57386291 57386377 -28309377 + L1MB4 LINE L1 6094 6179 -1 664 276 99 67 chr15 57386377 57386615 -28309139 - L2 LINE L2 -185 3128 2868 210 214 71 29 chr15 57386960 57387030 -28308724 - L3 LINE CR1 -82 1495 1423 394 195 0 26 chr15 57387284 57387361 -28308393 + AluSp SINE Alu 120 194 -109 1497 216 63 8 chr15 57387389 57387783 -28307971 - L1ME2 LINE L1 -170 5994 5579 224 292 83 21 chr15 57388081 57388177 -28307577 + MIR3 SINE MIR 84 185 -23 198 143 0 0 chr15 57388260 57388295 -28307459 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 942 239 50 9 chr15 57388538 57388760 -28306994 - MIR SINE MIR 0 262 32 2342 80 17 0 chr15 57388802 57389102 -28306652 - AluSq SINE Alu -8 305 1 1187 119 6 0 chr15 57389257 57389416 -28306338 + AluSg/x SINE Alu 142 301 -11 3646 185 39 12 chr15 57389483 57389692 -28306062 + L1ME4a LINE L1 4455 4657 -1527 2445 81 3 7 chr15 57389692 57389999 -28305755 + AluY SINE Alu 1 306 -5 3646 185 39 12 chr15 57389999 57391040 -28304714 + L1ME4a LINE L1 4657 5742 -442 1438 211 56 85 chr15 57391040 57391614 -28304140 - LTR5 LTR ERVK 0 969 413 2169 67 11 4 chr15 57391955 57392225 -28303529 - AluY SINE Alu -6 305 34 1419 168 62 36 chr15 57393239 57393537 -28302217 - AluJo SINE Alu 0 305 1 275 202 0 36 chr15 57394290 57394374 -28301380 + L2 LINE L2 2348 2428 -886 668 257 124 51 chr15 57394423 57394925 -28300829 + L1MC4 LINE L1 7427 8041 -1 453 280 169 15 chr15 57394935 57395260 -28300494 + L2 LINE L2 2532 2906 -408 696 312 79 10 chr15 57395309 57395601 -28300153 + L2 LINE L2 2999 3310 -3 227 366 28 21 chr15 57395609 57395751 -28300003 - L2 LINE L2 -61 3252 3110 335 288 42 25 chr15 57396422 57396540 -28299214 + L1ME4a LINE L1 5796 5915 -206 404 147 0 11 chr15 57397091 57397186 -28298568 + (CA)n Simple_repeat Simple_repeat 2 95 0 243 0 0 0 chr15 57397247 57397274 -28298480 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 462 186 52 129 chr15 57397412 57397561 -28298193 - L1MEc LINE L1 -1248 4967 4843 764 154 0 22 chr15 57397561 57397697 -28298057 - FLAM_C SINE Alu 0 133 1 462 186 52 129 chr15 57397697 57397795 -28297959 - L1MEc LINE L1 -1372 4843 4739 470 252 13 73 chr15 57397796 57397947 -28297807 + MLT1F1 LTR MaLR 1 142 -451 332 91 0 0 chr15 57397993 57398048 -28297706 + L1MA2 LINE L1 6102 6156 -148 1081 240 108 34 chr15 57398053 57398462 -28297292 + MLT1F1 LTR MaLR 129 567 0 1555 253 58 31 chr15 57398462 57398727 -28297027 - L1MEc LINE L1 -1473 4742 4486 2172 120 0 3 chr15 57398727 57399069 -28296685 - AluSq SINE Alu 0 341 1 1555 253 58 31 chr15 57399069 57399452 -28296302 - L1MEc LINE L1 -1729 4486 4115 2413 81 0 7 chr15 57399452 57399749 -28296005 - AluY SINE Alu -16 295 1 1555 253 58 31 chr15 57399749 57399789 -28295965 - L1MEc LINE L1 -2100 4115 1693 1351 201 75 33 chr15 57399789 57400040 -28295714 - MLT1F1 LTR MaLR 0 567 297 1366 212 67 67 chr15 57400040 57400545 -28295209 - MLT1D LTR MaLR 0 505 1 1351 201 75 33 chr15 57400545 57400626 -28295128 - MLT1F1 LTR MaLR -270 297 221 876 273 57 65 chr15 57400610 57400729 -28295025 - MLT1H1 LTR MaLR -180 410 292 * 1408 85 80 18 chr15 57400729 57400953 -28294801 - L1PA10 LINE L1 -1 6167 5930 876 273 57 65 chr15 57400953 57401236 -28294518 - MLT1H1 LTR MaLR -298 292 11 453 321 19 5 chr15 57401248 57401463 -28294291 - L1MEc LINE L1 -4703 1693 1476 1597 181 44 0 chr15 57401512 57401805 -28293949 - AluJb SINE Alu -6 306 1 1937 138 6 18 chr15 57401814 57402147 -28293607 - L1MB7 LINE L1 -119 6065 5737 2445 163 11 11 chr15 57402147 57402583 -28293171 + LTR5 LTR ERVK 1 436 -533 464 182 30 30 chr15 57402746 57402845 -28292909 - Charlie7 DNA MER1_type -2508 104 6 279 290 20 20 chr15 57402964 57403064 -28292690 - MIR SINE MIR -117 145 46 208 97 0 32 chr15 57403588 57403619 -28292135 + MER5A DNA MER1_type 2 31 -158 226 254 73 0 chr15 57403907 57403962 -28291792 - L2 LINE L2 -60 3212 3154 297 297 109 38 chr15 57404026 57404199 -28291555 - MIR SINE MIR -62 146 15 1612 116 52 204 chr15 57404711 57404787 -28290967 - MSTD LTR MaLR -1 395 309 2120 101 0 0 chr15 57404787 57405054 -28290700 - AluSx SINE Alu -45 267 1 1612 116 52 204 chr15 57405054 57405442 -28290312 - MSTD LTR MaLR -87 309 2 455 196 49 39 chr15 57405503 57405605 -28290149 + MER63A DNA MER1_type 4 106 0 1026 108 38 38 chr15 57405609 57405766 -28289988 - AluSg/x SINE Alu -16 296 140 251 288 14 0 chr15 57405779 57405852 -28289902 + MER63A DNA MER1_type 129 202 -8 1985 118 7 20 chr15 57406842 57407138 -28288616 - AluJo SINE Alu -20 292 1 267 348 25 19 chr15 57407561 57407722 -28288032 + LTR16C LTR ERVL 330 491 0 655 153 18 9 chr15 57407974 57408085 -28287669 - FLAM_C SINE Alu -11 132 21 1059 127 106 49 chr15 57408462 57408703 -28287051 + MER44D DNA MER2_type 1 525 -84 417 99 28 14 chr15 57408703 57408774 -28286980 - Tigger5 DNA MER2_type -1 2322 2251 245 150 0 0 chr15 57408748 57408788 -28286966 - Tigger5 DNA MER2_type -2273 50 11 * 327 155 127 14 chr15 57408790 57408861 -28286893 + MER44D DNA MER2_type 626 704 -1 231 284 14 14 chr15 57409987 57410061 -28285693 - MER112 DNA MER1_type -9 251 178 1720 144 49 11 chr15 57410077 57410361 -28285393 + AluJo SINE Alu 1 295 -17 1904 129 9 60 chr15 57410368 57410686 -28285068 + AluSx SINE Alu 1 302 -10 1638 169 18 3 chr15 57410729 57411013 -28284741 + AluJo SINE Alu 2 289 -23 2221 92 0 33 chr15 57411116 57411421 -28284333 - AluSx SINE Alu -17 295 1 32 0 0 0 chr15 57412459 57412491 -28283263 + AT_rich Low_complexity Low_complexity 1 32 0 439 242 94 13 chr15 57412659 57412808 -28282946 - MER112 DNA MER1_type -99 161 1 247 273 13 39 chr15 57412985 57413062 -28282692 - Charlie4a DNA MER1_type -9 499 425 2496 49 0 20 chr15 57413479 57413785 -28281969 - AluY SINE Alu -11 300 1 2546 158 68 46 chr15 57413803 57414650 -28281104 + MER52C LTR ERV1 6 1046 -232 886 149 186 70 chr15 57414704 57415053 -28280701 + MER52C LTR ERV1 924 1278 0 1615 167 108 11 chr15 57415412 57415545 -28280209 - Charlie4a DNA MER1_type -1522 439 320 2047 121 10 29 chr15 57415545 57415851 -28279903 - AluJb SINE Alu -12 300 1 1615 167 108 11 chr15 57415851 57416088 -28279666 - Charlie4a DNA MER1_type -1641 320 33 436 224 152 8 chr15 57416475 57416600 -28279154 - L3 LINE CR1 -11 1566 1424 371 179 9 113 chr15 57417065 57417171 -28278583 + MER21B LTR ERV1 12 106 -757 * 3428 190 50 36 chr15 57417169 57417348 -28278406 + MER21B LTR ERV1 19 194 -669 1980 151 3 26 chr15 57417348 57417659 -28278095 + AluJo SINE Alu 7 310 -2 3428 190 50 36 chr15 57417659 57418238 -28277516 + MER21B LTR ERV1 194 788 -75 1108 260 60 4 chr15 57418240 57418726 -28277028 + L1ME3 LINE L1 5597 6148 -14 230 167 0 37 chr15 57419046 57419100 -28276654 - L1ME LINE L1 -672 5449 5398 1800 169 0 17 chr15 57419167 57419496 -28276258 - AluJb SINE Alu 0 324 1 216 207 35 17 chr15 57420006 57420028 -28275726 + CT-rich Low_complexity Low_complexity 4 24 -38 2419 109 0 0 chr15 57420028 57420339 -28275415 - AluSx SINE Alu -1 311 1 216 207 35 17 chr15 57420339 57420374 -28275380 + CT-rich Low_complexity Low_complexity 24 62 0 247 254 99 0 chr15 57421288 57421359 -28274395 - MIR SINE MIR 0 262 185 578 207 129 0 chr15 57421390 57421530 -28274224 - MIR SINE MIR -59 203 46 467 278 8 0 chr15 57421647 57421773 -28273981 + L1ME2 LINE L1 6014 6140 -24 1204 189 135 0 chr15 57421804 57422137 -28273617 + Zaphod DNA AcHobo 3332 3709 -322 348 253 183 15 chr15 57422202 57422404 -28273350 + L2 LINE L2 2848 3083 -230 275 295 49 41 chr15 57422935 57423057 -28272697 + L2 LINE L2 3150 3272 0 596 238 63 7 chr15 57423090 57423233 -28272521 - MIR SINE MIR -49 213 63 616 149 0 0 chr15 57424158 57424245 -28271509 - AluJ/FLAM SINE Alu -224 88 2 397 304 126 10 chr15 57427137 57427344 -28268410 - MIR SINE MIR -25 237 7 201 277 59 42 chr15 57427562 57427681 -28268073 + L2 LINE L2 2120 2240 -1074 2027 159 0 3 chr15 57427770 57428071 -28267683 - AluSx SINE Alu -12 300 1 2286 86 4 0 chr15 57428705 57428983 -28266771 + AluSq SINE Alu 1 279 -34 923 107 24 12 chr15 57428985 57429154 -28266600 + GA-rich Low_complexity Low_complexity 2 172 0 322 316 20 0 chr15 57429509 57429607 -28266147 - L2 LINE L2 -2 3311 3212 345 263 53 0 chr15 57430262 57430357 -28265397 + MIR SINE MIR 33 132 -76 727 283 117 4 chr15 57430532 57430762 -28264992 - MIR SINE MIR -5 257 2 2191 82 0 20 chr15 57430897 57431200 -28264554 - AluSg SINE Alu -13 297 1 420 295 3 20 chr15 57431271 57431550 -28264204 + C-rich Low_complexity Low_complexity 1 274 0 1750 168 0 29 chr15 57431653 57431968 -28263786 - AluJb SINE Alu 0 312 7 650 67 17 100 chr15 57432827 57432882 -28262872 - L1PB2 LINE L1 0 6151 6110 2146 113 17 3 chr15 57432882 57433183 -28262571 - AluSx SINE Alu -7 305 1 650 67 17 100 chr15 57433183 57433247 -28262507 - L1PB2 LINE L1 -41 6110 6042 2036 130 25 35 chr15 57433252 57433567 -28262187 + AluJo SINE Alu 1 312 0 1874 126 17 30 chr15 57434141 57434442 -28261312 - AluSx SINE Alu -15 297 1 1378 169 37 83 chr15 57434478 57434669 -28261085 - AluJo SINE Alu -1 311 140 1676 131 0 0 chr15 57434669 57434898 -28260856 - AluSx SINE Alu -83 229 1 1378 169 37 83 chr15 57434898 57435032 -28260722 - AluJo SINE Alu -172 140 1 1803 169 43 11 chr15 57435032 57435381 -28260373 - L1MB8 LINE L1 -9 6169 5810 222 373 82 0 chr15 57435489 57435623 -28260131 - L2 LINE L2 -493 2821 2677 2374 114 0 0 chr15 57436293 57436600 -28259154 - AluSq SINE Alu -6 307 1 3741 108 4 4 chr15 57437544 57438055 -28257699 + MER9 LTR ERVK 1 511 0 524 241 76 67 chr15 57438070 57438294 -28257460 - MER102b DNA MER1_type -24 317 92 369 289 167 0 chr15 57438319 57438475 -28257279 + LTR33 LTR ERVL 27 208 -313 463 241 118 15 chr15 57438540 57438743 -28257011 + LTR33 LTR ERVL 297 520 -1 208 182 55 36 chr15 57439952 57440007 -28255747 + MIR3 SINE MIR 146 201 -7 185 81 0 54 chr15 57440200 57440237 -28255517 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2229 115 7 7 chr15 57440525 57440820 -28254934 - AluSx SINE Alu -17 295 1 331 216 64 64 chr15 57442066 57442191 -28253563 - MIR3 SINE MIR -7 201 77 1951 107 63 27 chr15 57442376 57442676 -28253078 - AluJo SINE Alu -1 311 1 1875 104 31 0 chr15 57442855 57443115 -28252639 - AluSx SINE Alu -17 295 28 206 121 0 0 chr15 57444026 57444059 -28251695 + (CA)n Simple_repeat Simple_repeat 2 34 0 1661 111 41 12 chr15 57444173 57444417 -28251337 - AluSx SINE Alu -1 311 61 311 211 57 32 chr15 57444905 57445028 -28250726 - L1MC4 LINE L1 -3 8039 7914 1109 111 140 34 chr15 57445032 57445239 -28250515 - AluJb SINE Alu 0 312 84 236 351 0 30 chr15 57445771 57445905 -28249849 + T-rich Low_complexity Low_complexity 5 134 0 1702 181 71 0 chr15 57446193 57446518 -28249236 - MER7A DNA MER2_type 0 346 1 2194 86 0 61 chr15 57446520 57446833 -28248921 - AluSg SINE Alu -16 294 1 362 265 287 13 chr15 57450137 57450367 -28245387 - L2 LINE L2 -79 3234 2942 23 33 0 0 chr15 57451595 57451625 -28244129 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr15 57452307 57452332 -28243422 + AT_rich Low_complexity Low_complexity 1 25 0 473 222 20 0 chr15 57452386 57452485 -28243269 + MER5A DNA MER1_type 9 109 -80 240 234 255 11 chr15 57452419 57452513 -28243241 - MER5A DNA MER1_type -32 157 41 * 1773 161 29 0 chr15 57456276 57456596 -28239158 + AluJo SINE Alu 1 328 0 1011 137 132 10 chr15 57457431 57457635 -28238119 + L1ME LINE L1 5469 5697 -469 1709 155 90 7 chr15 57457953 57458230 -28237524 - AluSx SINE Alu -12 300 1 191 346 39 31 chr15 57458618 57458748 -28237006 - MER5B DNA MER1_type -33 145 15 1274 226 25 19 chr15 57459411 57459725 -28236029 + MER46C DNA MER2_type 22 337 -1 345 150 33 0 chr15 57460930 57460990 -28234764 - MIR SINE MIR -82 180 119 201 39 0 0 chr15 57461906 57461932 -28233822 + (TTG)n Simple_repeat Simple_repeat 3 28 0 29 0 0 0 chr15 57463176 57463205 -28232549 + AT_rich Low_complexity Low_complexity 1 29 0 1768 115 0 4 chr15 57463332 57463575 -28232179 + AluSc SINE Alu 68 309 0 1806 149 25 0 chr15 57463657 57463933 -28231821 - AluJo SINE Alu -19 293 11 1237 171 180 9 chr15 57463960 57463992 -28231762 - Charlie4a DNA MER1_type -1550 411 386 2574 214 84 8 chr15 57463992 57464599 -28231155 + MER82 DNA MER2_type 1 653 0 1237 171 180 9 chr15 57464599 57464910 -28230844 - Charlie4a DNA MER1_type -1575 386 9 458 93 0 40 chr15 57465021 57465096 -28230658 - MER81 DNA DNA -42 72 1 225 119 0 0 chr15 57465351 57465393 -28230361 + (CA)n Simple_repeat Simple_repeat 1 42 0 457 212 200 6 chr15 57465856 57466026 -28229728 + MER46C DNA MER2_type 2 204 -134 1821 168 3 7 chr15 57466056 57466391 -28229363 + AluSx SINE Alu 1 334 0 382 148 0 0 chr15 57466396 57466457 -28229297 + MER46C DNA MER2_type 278 338 0 2119 134 0 3 chr15 57466674 57466964 -28228790 + AluSx SINE Alu 1 289 -23 2489 63 10 3 chr15 57466975 57467278 -28228476 + AluY SINE Alu 3 307 -4 409 252 41 68 chr15 57467280 57467428 -28228326 - MIR SINE MIR -61 147 3 301 197 16 0 chr15 57467870 57467931 -28227823 + MIR SINE MIR 58 119 -89 598 267 35 0 chr15 57468211 57468383 -28227371 + MER5B DNA MER1_type 1 178 0 591 177 191 7 chr15 57468385 57468526 -28227228 - MER5A DNA MER1_type -7 182 16 1782 166 15 84 chr15 57468923 57469326 -28226428 - MLT1B LTR MaLR -15 375 1 324 220 77 0 chr15 57469328 57469419 -28226335 - Charlie8 DNA MER1_type -2227 190 93 530 227 216 10 chr15 57469976 57470170 -28225584 + MIR SINE MIR 19 252 -10 354 288 62 44 chr15 57470289 57470449 -28225305 - MIR SINE MIR -56 206 44 858 253 67 0 chr15 57470601 57470826 -28224928 + MIR SINE MIR 20 259 -3 2546 60 0 0 chr15 57470944 57471243 -28224511 + AluY SINE Alu 13 311 0 404 264 73 95 chr15 57471896 57472169 -28223585 + L2 LINE L2 2899 3165 -107 2396 82 7 0 chr15 57472289 57472582 -28223172 + AluSq SINE Alu 2 296 -17 411 167 77 0 chr15 57472588 57472666 -28223088 - AluSc SINE Alu -94 215 132 1451 93 0 173 chr15 57472666 57472955 -28222799 - AluSx SINE Alu -11 301 63 21 0 0 0 chr15 57473785 57473806 -28221948 + AT_rich Low_complexity Low_complexity 1 21 0 459 270 11 63 chr15 57475217 57475391 -28220363 - MIR3 SINE MIR -29 179 15 210 170 21 21 chr15 57475744 57475791 -28219963 + (CGG)n Simple_repeat Simple_repeat 2 48 0 343 233 0 19 chr15 57476057 57476160 -28219594 + L1MC5 LINE L1 7807 7907 -54 709 180 0 136 chr15 57477302 57477432 -28218322 + MER45A DNA AcHobo 1 94 -1487 2295 116 0 0 chr15 57477432 57477735 -28218019 - AluY SINE Alu -8 303 1 709 180 0 136 chr15 57477735 57477810 -28217944 + MER45A DNA AcHobo 94 178 0 1800 160 4 0 chr15 57478365 57478640 -28217114 - AluJb SINE Alu -22 290 15 2120 117 3 0 chr15 57478824 57479146 -28216608 + AluSx SINE Alu 1 323 0 182 320 82 25 chr15 57479295 57479417 -28216337 - L2 LINE L2 -5 3267 3139 294 308 22 60 chr15 57479704 57479882 -28215872 - L2 LINE L2 -563 2751 2581 401 266 31 47 chr15 57479882 57480065 -28215689 + MER5A DNA MER1_type 1 169 -9 952 316 105 36 chr15 57480086 57480532 -28215222 - L2 LINE L2 -822 2492 2078 2110 133 3 0 chr15 57480532 57480825 -28214929 + AluSx SINE Alu 1 294 -18 952 316 105 36 chr15 57480825 57481292 -28214462 - L2 LINE L2 -1236 2078 1516 2130 145 6 6 chr15 57481991 57482302 -28213452 + AluSx SINE Alu 2 312 0 384 337 23 6 chr15 57482306 57482478 -28213276 - L2 LINE L2 -556 2758 2584 224 363 48 6 chr15 57483204 57483372 -28212382 + L3 LINE CR1 1313 1487 -90 182 257 203 0 chr15 57484388 57484462 -28211292 + MIR SINE MIR 50 138 -70 879 163 7 0 chr15 57484475 57484610 -28211144 - AluJo SINE Alu -176 136 1 290 330 89 0 chr15 57484610 57484722 -28211032 + MIR SINE MIR 129 250 -12 184 333 72 9 chr15 57484762 57484873 -28210881 - MIR SINE MIR -61 147 30 1762 158 70 0 chr15 57485016 57485289 -28210465 + AluJo SINE Alu 6 297 -15 357 284 28 9 chr15 57485461 57485570 -28210184 + MIR SINE MIR 20 130 -78 269 341 30 22 chr15 57486350 57486485 -28209269 - MIR3 SINE MIR -26 182 47 280 320 40 0 chr15 57486798 57486948 -28208806 + L2 LINE L2 2691 2846 -468 704 0 0 40 chr15 57487155 57487255 -28208499 + (TGAA)n Simple_repeat Simple_repeat 1 96 0 514 253 5 50 chr15 57487332 57487530 -28208224 + L1ME LINE L1 5612 5800 -321 436 311 34 25 chr15 57487662 57487983 -28207771 - L1M4 LINE L1 -1299 4847 4524 24 0 0 0 chr15 57488172 57488196 -28207558 + AT_rich Low_complexity Low_complexity 1 24 0 259 324 9 19 chr15 57489077 57489182 -28206572 - MIR SINE MIR -60 148 45 213 302 142 49 chr15 57490194 57490482 -28205272 - L2 LINE L2 -2 3270 2956 1348 93 5 52 chr15 57490820 57491013 -28204741 - AluSp SINE Alu -129 184 1 740 203 0 0 chr15 57491035 57491168 -28204586 - FLAM_C SINE Alu 0 133 1 1943 169 13 0 chr15 57491170 57491471 -28204283 - AluJo SINE Alu -7 305 1 499 238 72 59 chr15 57491488 57491674 -28204080 - MIR3 SINE MIR -51 211 25 344 279 29 81 chr15 57491729 57491901 -28203853 - MIR SINE MIR -50 212 50 2154 129 16 3 chr15 57492254 57492563 -28203191 - AluSq SINE Alu 0 313 1 289 290 38 15 chr15 57493438 57493569 -28202185 - MIR3 SINE MIR -1 207 74 428 229 69 31 chr15 57493800 57493929 -28201825 - MIR3 SINE MIR -36 172 40 1155 233 86 52 chr15 57494873 57495211 -28200543 - MLT1C LTR MaLR 0 396 71 1888 161 0 34 chr15 57495211 57495533 -28200221 + AluJb SINE Alu 1 311 -1 333 0 0 0 chr15 57495540 57495577 -28200177 + (CA)n Simple_repeat Simple_repeat 2 38 0 1155 233 86 52 chr15 57495577 57495877 -28199877 - MLT1C LTR MaLR -330 66 1 666 200 109 11 chr15 57495877 57496052 -28199702 - MLT1C LTR MaLR -272 195 4 554 227 162 15 chr15 57497147 57497542 -28198212 + LTR33 LTR ERVL 27 521 0 1017 100 0 78 chr15 57497561 57497685 -28198069 + L1MB5 LINE L1 6001 6108 -66 1912 176 0 7 chr15 57497685 57497980 -28197774 - AluJo SINE Alu -19 293 1 1017 100 0 78 chr15 57497980 57498035 -28197719 + L1MB5 LINE L1 6108 6166 -8 783 303 37 27 chr15 57498099 57498495 -28197259 - L1MC4a LINE L1 -224 6018 5619 5711 63 29 17 chr15 57498551 57498987 -28196767 - LTR17 LTR ERV1 -6 774 324 2307 81 3 7 chr15 57498987 57499283 -28196471 - AluY SINE Alu -12 299 5 5711 63 29 17 chr15 57499283 57499611 -28196143 - LTR17 LTR ERV1 -456 324 1 2068 115 34 3 chr15 57499836 57500131 -28195623 + AluSx SINE Alu 1 304 -8 410 170 0 75 chr15 57500343 57500437 -28195317 - FLAM_C SINE Alu -8 135 49 1929 126 15 0 chr15 57500986 57501257 -28194497 + AluSx SINE Alu 36 310 -2 308 173 0 0 chr15 57501619 57501671 -28194083 + MIR SINE MIR 97 148 -60 485 257 84 22 chr15 57502185 57502345 -28193409 + MIR SINE MIR 73 247 -15 1548 180 57 20 chr15 57502345 57502645 -28193109 + AluJo SINE Alu 2 312 0 485 257 84 22 chr15 57502645 57502663 -28193091 + MIR SINE MIR 247 262 0 244 252 224 9 chr15 57502847 57502954 -28192800 + MIR3 SINE MIR 11 140 -68 366 190 60 30 chr15 57503009 57503109 -28192645 - MIR3 SINE MIR -16 192 90 197 306 28 14 chr15 57503746 57503818 -28191936 - MIR SINE MIR -71 191 119 4353 119 101 117 chr15 57504849 57506274 -28189480 - pTR5 LTR ERV1 0 2438 744 588 289 57 21 chr15 57506350 57506544 -28189210 - MIR SINE MIR -17 245 45 1612 150 89 21 chr15 57506880 57507145 -28188609 + AluJo SINE Alu 1 287 -25 204 40 0 0 chr15 57507145 57507170 -28188584 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 1612 150 89 21 chr15 57507170 57507184 -28188570 + AluJo SINE Alu 287 299 -13 1027 176 63 22 chr15 57507185 57507407 -28188347 + MLT1D LTR MaLR 275 505 0 285 277 64 11 chr15 57507484 57507578 -28188176 - L2 LINE L2 -14 3258 3160 1821 268 32 15 chr15 57507976 57508505 -28187249 + L1ME3A LINE L1 5615 6152 -18 21 0 0 0 chr15 57508513 57508534 -28187220 + AT_rich Low_complexity Low_complexity 1 21 0 371 298 12 82 chr15 57508564 57508735 -28187019 + MIR3 SINE MIR 9 167 -41 357 24 0 0 chr15 57508788 57508830 -28186924 + (GA)n Simple_repeat Simple_repeat 2 43 0 229 339 65 26 chr15 57508953 57509108 -28186646 + MIR SINE MIR 30 191 -61 335 274 7 59 chr15 57509662 57509740 -28186014 - L1ME4a LINE L1 0 6121 6040 2299 102 0 6 chr15 57509740 57510053 -28185701 + AluSx SINE Alu 1 311 -1 335 274 7 59 chr15 57510053 57510066 -28185688 - L1ME4a LINE L1 -81 6040 6028 1611 193 3 17 chr15 57510066 57510366 -28185388 + AluJo SINE Alu 1 296 -16 335 274 7 59 chr15 57510366 57510426 -28185328 - L1ME4a LINE L1 -93 6028 5977 262 196 0 0 chr15 57510458 57510504 -28185250 - LTR67 LTR ERVL -3 554 509 791 243 98 50 chr15 57510510 57510848 -28184906 - MLT1J1 LTR MaLR -3 443 90 2501 118 30 12 chr15 57511257 57511664 -28184090 - L1MA9 LINE L1 0 6312 5899 879 168 0 0 chr15 57512103 57512246 -28183508 - FLAM_C SINE Alu 0 143 1 351 235 39 29 chr15 57512322 57512424 -28183330 + L1ME LINE L1 5373 5475 -687 1269 170 112 54 chr15 57512434 57512581 -28183173 + AluJo SINE Alu 1 138 -174 2097 117 10 0 chr15 57512581 57512871 -28182883 + AluSx SINE Alu 1 293 -19 1269 170 112 54 chr15 57512871 57513000 -28182754 + AluJo SINE Alu 138 293 -19 432 242 11 0 chr15 57513000 57513080 -28182674 + AluJb SINE Alu 131 214 -98 366 213 6 60 chr15 57513232 57513415 -28182339 + G-rich Low_complexity Low_complexity 6 178 0 875 219 7 65 chr15 57513433 57513711 -28182043 - MER67A LTR ERV1 -150 393 132 766 221 54 37 chr15 57513713 57513900 -28181854 + MER1B DNA MER1_type 4 186 -2526 2202 121 0 0 chr15 57513900 57514198 -28181556 - AluSx SINE Alu -14 298 1 766 221 54 37 chr15 57514198 57514228 -28181526 + MER1B DNA MER1_type 186 214 -2498 2223 112 0 0 chr15 57514228 57514533 -28181221 - AluSx SINE Alu -7 305 1 766 221 54 37 chr15 57514533 57514631 -28181123 + MER1B DNA MER1_type 214 339 0 730 177 14 0 chr15 57514631 57514768 -28180986 - MER67A LTR ERV1 -404 139 1 603 221 7 45 chr15 57514846 57515000 -28180754 - MIR SINE MIR -87 175 28 678 250 85 0 chr15 57515134 57515298 -28180456 - MER5B DNA MER1_type 0 178 1 229 311 38 47 chr15 57515308 57515414 -28180340 - MIR SINE MIR -55 207 103 25 0 0 0 chr15 57516807 57516832 -28178922 + GC_rich Low_complexity Low_complexity 1 25 0 311 191 133 38 chr15 57566941 57567046 -28128708 - L1ME4a LINE L1 -1 6120 6006 215 167 0 0 chr15 57567179 57567215 -28128539 - L2 LINE L2 0 3313 3278 2068 123 0 3 chr15 57567414 57567723 -28128031 + AluSx SINE Alu 1 308 -4 315 0 0 0 chr15 57568157 57568192 -28127562 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5297 19 0 0 chr15 57568192 57568776 -28126978 - SVA Other Other -18 1368 785 895 201 42 11 chr15 57568890 57569079 -28126675 - AluJo SINE Alu -116 196 2 733 175 0 29 chr15 57569538 57569675 -28126079 + FLAM_C SINE Alu 1 133 0 191 293 17 0 chr15 57569751 57569809 -28125945 + MIR SINE MIR 154 212 -50 909 221 92 20 chr15 57569879 57570271 -28125483 - MLT1F LTR MaLR -2 540 34 1033 206 56 4 chr15 57570410 57570643 -28125111 - MER82 DNA MER2_type -408 245 1 441 284 127 0 chr15 57570827 57570961 -28124793 - MER5B DNA MER1_type -12 166 16 612 213 146 30 chr15 57570964 57571128 -28124626 - MER5A DNA MER1_type -6 183 1 269 315 87 0 chr15 57571352 57571444 -28124310 - MLT1K LTR MaLR -348 240 141 22 0 0 0 chr15 57572321 57572343 -28123411 + AT_rich Low_complexity Low_complexity 1 22 0 420 279 78 19 chr15 57572785 57572939 -28122815 + MIR SINE MIR 58 220 -42 2314 82 3 0 chr15 57572943 57573248 -28122506 + AluSx SINE Alu 1 306 -6 1723 165 0 16 chr15 57573544 57573847 -28121907 - AluJo SINE Alu -14 298 1 1225 209 45 21 chr15 57573937 57574224 -28121530 + Charlie4 DNA MER1_type 3 296 -1665 1144 121 121 0 chr15 57574731 57574937 -28120817 + L1MA5A LINE L1 6064 6294 -3 2083 85 53 0 chr15 57575410 57575693 -28120061 + AluSg SINE Alu 1 298 -12 1809 152 0 0 chr15 57576152 57576442 -28119312 + AluJb SINE Alu 13 302 -10 276 270 30 139 chr15 57576776 57577013 -28118741 - MLT1K LTR MaLR -115 473 263 199 242 16 16 chr15 57577336 57577398 -28118356 + L2 LINE L2 3200 3261 -11 206 211 35 18 chr15 57577617 57577647 -28118107 + MIR SINE MIR 156 184 -78 1793 133 14 14 chr15 57577647 57577940 -28117814 - AluSx SINE Alu -15 297 5 206 211 35 18 chr15 57577940 57577966 -28117788 + MIR SINE MIR 184 213 -49 1604 157 4 8 chr15 57577977 57578245 -28117509 - AluSx SINE Alu -9 303 37 1071 99 13 0 chr15 57578588 57578739 -28117015 + MSTA LTR MaLR 28 180 -248 1697 117 0 0 chr15 57578739 57578988 -28116766 - AluSx SINE Alu 0 312 64 6650 161 9 8 chr15 57578991 57580057 -28115697 + MSTA-int LTR MaLR 582 1649 -2 2676 135 29 0 chr15 57580059 57580475 -28115279 + MSTA LTR MaLR 1 428 0 269 271 146 70 chr15 57580475 57580674 -28115080 - L3 LINE CR1 -149 1428 1215 1877 155 0 7 chr15 57580680 57580983 -28114771 - AluSx SINE Alu -11 301 1 1612 90 13 34 chr15 57580996 57581230 -28114524 - AluSg/x SINE Alu -7 305 77 24 0 0 0 chr15 57581433 57581457 -28114297 + AT_rich Low_complexity Low_complexity 1 24 0 605 206 71 16 chr15 57581469 57581595 -28114159 + FLAM_A SINE Alu 1 133 0 180 129 32 0 chr15 57581902 57581933 -28113821 + L2 LINE L2 3273 3304 -9 195 206 16 63 chr15 57582177 57582240 -28113514 - L2 LINE L2 -698 2616 2557 * 280 309 0 0 chr15 57582230 57582298 -28113456 + MIR SINE MIR 79 146 -116 2117 109 7 0 chr15 57582485 57582789 -28112965 + AluSp SINE Alu 1 306 -7 1978 128 0 13 chr15 57582840 57583145 -28112609 + AluSx SINE Alu 1 301 -11 359 176 206 0 chr15 57583228 57583330 -28112424 + L1ME4a LINE L1 5996 6118 -3 2530 170 44 51 chr15 57583711 57584276 -28111478 + L1MB8 LINE L1 5618 6178 0 345 264 140 34 chr15 57584587 57584765 -28110989 + L1M4 LINE L1 5181 5377 -769 224 305 197 19 chr15 57585067 57585382 -28110372 + L2 LINE L2 2591 2961 -353 253 268 181 39 chr15 57585437 57585564 -28110190 + L2 LINE L2 3168 3312 -1 1348 268 119 17 chr15 57586414 57587148 -28108606 - L2 LINE L2 0 3313 2503 1415 213 52 26 chr15 57587199 57587542 -28108212 - MER82 DNA MER2_type -6 647 296 325 173 0 0 chr15 57587533 57587585 -28108169 + AluJ/FLAM SINE Alu 23 74 -228 * 405 250 171 12 chr15 57587819 57587983 -28107771 - L2 LINE L2 0 3313 3124 201 374 74 37 chr15 57588202 57588365 -28107389 - L2 LINE L2 -459 2855 2687 2100 125 0 6 chr15 57588369 57588680 -28107074 + AluSx SINE Alu 1 309 -3 264 216 54 27 chr15 57589093 57589167 -28106587 - MIR SINE MIR -114 94 19 1998 171 64 37 chr15 57589199 57589654 -28106100 - MLT1C LTR MaLR 0 467 1 1849 148 3 3 chr15 57589881 57590191 -28105563 + AluSx SINE Alu 1 310 -2 1803 168 7 0 chr15 57590673 57590970 -28104784 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr15 57591036 57591056 -28104698 + (A)n Simple_repeat Simple_repeat 1 20 0 1557 204 10 136 chr15 57591073 57591625 -28104129 + L1MC4 LINE L1 7408 7848 -194 967 198 17 0 chr15 57591625 57591797 -28103957 + FAM SINE Alu 1 175 0 1557 204 10 136 chr15 57591797 57591970 -28103784 + L1MC4 LINE L1 7848 8041 -1 1771 158 7 0 chr15 57591994 57592286 -28103468 + AluJb SINE Alu 1 294 -18 1043 197 108 111 chr15 57592421 57592602 -28103152 + L1MD2 LINE L1 5980 6160 -199 351 0 0 0 chr15 57592602 57592641 -28103113 + (CA)n Simple_repeat Simple_repeat 1 39 0 1043 197 108 111 chr15 57592641 57592830 -28102924 + L1MD2 LINE L1 6160 6349 -10 232 136 0 0 chr15 57592835 57592879 -28102875 + L1MB7 LINE L1 6132 6175 -9 615 208 8 8 chr15 57592890 57593010 -28102744 + FLAM_A SINE Alu 10 129 -13 2178 93 0 20 chr15 57593235 57593535 -28102219 + AluSg SINE Alu 1 294 -16 312 262 78 0 chr15 57594653 57594756 -28100998 + MIR SINE MIR 40 150 -112 395 252 171 8 chr15 57594805 57594928 -28100826 + MER5A DNA MER1_type 1 143 -46 2270 74 0 10 chr15 57595006 57595303 -28100451 + AluY SINE Alu 1 294 -17 406 261 42 0 chr15 57596139 57596258 -28099496 + MIR3 SINE MIR 51 174 -34 1441 46 0 71 chr15 57596826 57597023 -28098731 - AluY SINE Alu -128 183 1 859 268 37 78 chr15 57597129 57597438 -28098316 - L1M4 LINE L1 -754 5392 5072 1571 161 34 24 chr15 57597438 57597729 -28098025 - AluJo SINE Alu -18 294 1 859 268 37 78 chr15 57597729 57597765 -28097989 - L1M4 LINE L1 -1074 5072 5036 1652 186 33 35 chr15 57597765 57598131 -28097623 + MLT1A1 LTR MaLR 1 365 0 859 268 37 78 chr15 57598131 57598467 -28097287 - L1M4 LINE L1 -1110 5036 4738 2139 95 7 10 chr15 57598514 57598810 -28096944 - AluSc SINE Alu -14 295 1 1080 233 122 7 chr15 57598842 57599094 -28096660 - LTR16C LTR ERVL -8 483 193 2416 208 21 30 chr15 57599094 57599657 -28096097 - MER74A LTR ERVL 0 558 1 1080 233 122 7 chr15 57599657 57599692 -28096062 - LTR16C LTR ERVL -298 193 163 1023 246 75 45 chr15 57599748 57599955 -28095799 - L1M4 LINE L1 -1468 4678 4479 1435 207 31 76 chr15 57599955 57600337 -28095417 - MLT1A1 LTR MaLR 0 365 1 1023 246 75 45 chr15 57600337 57600413 -28095341 - L1M4 LINE L1 -1667 4479 4407 2227 68 0 46 chr15 57600413 57600720 -28095034 - AluY SINE Alu -18 293 1 1023 246 75 45 chr15 57600720 57600944 -28094810 - L1M4 LINE L1 -1739 4407 4155 259 203 25 25 chr15 57600954 57601033 -28094721 + MER116 DNA Mariner 2 80 0 290 300 18 27 chr15 57601038 57601148 -28094606 - L1M4 LINE L1 -2008 4138 4030 862 201 13 0 chr15 57601174 57601328 -28094426 + AluJb SINE Alu 137 292 -20 225 320 40 32 chr15 57601355 57601480 -28094274 - L1M4 LINE L1 -2310 3836 3711 546 283 74 8 chr15 57601482 57601726 -28094028 - MIR SINE MIR -2 260 1 288 291 116 32 chr15 57603807 57603996 -28091758 - L2 LINE L2 -61 3211 3007 332 298 26 40 chr15 57603996 57604147 -28091607 + L2 LINE L2 2241 2389 -925 264 324 18 27 chr15 57604207 57604318 -28091436 + L2 LINE L2 3183 3292 -21 848 151 0 43 chr15 57604383 57604522 -28091232 + FLAM_A SINE Alu 1 133 0 307 304 134 47 chr15 57604611 57604924 -28090830 - L2 LINE L2 -452 2862 2489 2044 116 3 0 chr15 57604924 57605216 -28090538 + AluSx SINE Alu 1 293 -19 307 304 134 47 chr15 57605216 57605393 -28090361 - L2 LINE L2 -825 2489 2329 421 277 68 78 chr15 57605740 57605946 -28089808 - MLT1L LTR MaLR -407 208 5 358 229 12 0 chr15 57607526 57607609 -28088145 + L1MDa LINE L1 2506 2589 -3951 661 245 75 65 chr15 57607613 57607891 -28087863 + MLT1J LTR MaLR 229 509 -2 314 274 72 99 chr15 57608021 57608353 -28087401 - L2 LINE L2 -420 2894 2572 993 256 169 38 chr15 57608424 57608520 -28087234 - L2 LINE L2 -102 3211 3129 1821 168 0 10 chr15 57608520 57608811 -28086943 + AluJb SINE Alu 1 288 -24 993 256 169 38 chr15 57608811 57608830 -28086924 - L2 LINE L2 -184 3129 3114 1030 115 11 6 chr15 57608830 57609004 -28086750 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 993 256 169 38 chr15 57609004 57609512 -28086242 - L2 LINE L2 -199 3114 2494 239 331 106 7 chr15 57609977 57610128 -28085626 - MIR3 SINE MIR -25 183 18 900 258 13 18 chr15 57610258 57610483 -28085271 + MIR SINE MIR 2 225 -37 2369 85 7 0 chr15 57610486 57610780 -28084974 + AluSx SINE Alu 1 296 -16 430 296 70 34 chr15 57612220 57612613 -28083141 - LTR16C LTR ERVL -4 487 62 2326 118 0 0 chr15 57612794 57613099 -28082655 - AluSq SINE Alu -8 305 1 591 253 146 0 chr15 57613573 57613731 -28082023 + MER5A DNA MER1_type 7 187 -2 225 319 32 21 chr15 57613915 57614009 -28081745 + MER5A DNA MER1_type 95 189 0 451 254 85 62 chr15 57614156 57614370 -28081384 - MIR SINE MIR -1 261 41 315 0 0 0 chr15 57614669 57614704 -28081050 + (CA)n Simple_repeat Simple_repeat 1 35 0 1258 138 117 0 chr15 57616375 57616563 -28079191 - AluSq SINE Alu -103 210 1 933 247 111 43 chr15 57616571 57616940 -28078814 + L2 LINE L2 2920 3313 0 356 255 205 46 chr15 57616942 57617181 -28078573 + L2 LINE L2 2994 3270 -2 624 217 170 35 chr15 57617182 57617726 -28078028 - L1MC4 LINE L1 -25 6141 5495 2412 104 10 0 chr15 57617726 57618035 -28077719 + AluSx SINE Alu 1 312 0 624 217 170 35 chr15 57618035 57618270 -28077484 - L1MC4 LINE L1 -671 5495 5293 513 184 150 20 chr15 57618283 57618430 -28077324 - L1MB7 LINE L1 0 6184 6019 396 190 13 0 chr15 57618436 57618515 -28077239 - L1MC4 LINE L1 -849 5297 5218 310 114 0 0 chr15 57618928 57618972 -28076782 + Alu SINE Alu 1 44 -255 1322 88 65 0 chr15 57619002 57619218 -28076536 + LTR14A LTR ERVK 113 342 -2 438 212 23 15 chr15 57619221 57619353 -28076401 - L1MC5 LINE L1 -35 7926 7794 2160 61 25 21 chr15 57619404 57619708 -28076046 - AluY SINE Alu 0 305 1 182 62 31 0 chr15 57620002 57620034 -28075720 + (CCCG)n Simple_repeat Simple_repeat 4 36 0 231 170 0 0 chr15 57620283 57620330 -28075424 + (CTG)n Simple_repeat Simple_repeat 3 49 0 714 266 17 6 chr15 57621739 57621912 -28073842 - MIR SINE MIR -80 182 8 190 278 60 38 chr15 57621882 57622015 -28073739 + MIR3 SINE MIR 40 175 -33 * 1859 168 0 0 chr15 57622790 57623081 -28072673 - AluSx SINE Alu -21 291 1 203 346 51 0 chr15 57624137 57624215 -28071539 - L2 LINE L2 0 3313 3232 180 267 0 0 chr15 57624267 57624312 -28071442 - L2 LINE L2 -222 3050 3006 709 210 0 0 chr15 57624420 57624544 -28071210 - FLAM_C SINE Alu -18 125 2 2339 106 0 0 chr15 57624598 57624900 -28070854 - AluSx SINE Alu -10 302 1 352 284 115 60 chr15 57624947 57625295 -28070459 - L1M4 LINE L1 -878 5268 4902 182 264 38 0 chr15 57626176 57626229 -28069525 + MER5A DNA MER1_type 12 66 -123 277 193 301 12 chr15 57626909 57626992 -28068762 + MER5A DNA MER1_type 77 183 -6 264 354 122 6 chr15 57627243 57627424 -28068330 + MIR SINE MIR 47 248 -14 1408 147 18 0 chr15 57627435 57627660 -28068094 - MER66B LTR ERV1 0 486 258 2280 116 0 0 chr15 57627660 57627953 -28067801 - AluSx SINE Alu -15 297 5 749 278 130 52 chr15 57627953 57628431 -28067323 + L2 LINE L2 2592 3167 -146 1725 161 23 23 chr15 57628431 57628736 -28067018 - AluJb SINE Alu -7 305 1 749 278 130 52 chr15 57628736 57628896 -28066858 + L2 LINE L2 3167 3313 0 188 320 10 68 chr15 57628970 57629073 -28066681 + MER5A DNA MER1_type 42 138 -51 281 264 186 16 chr15 57629338 57629467 -28066287 + MIR SINE MIR 25 175 -87 183 100 0 0 chr15 57629467 57629497 -28066257 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2379 107 10 0 chr15 57629551 57629859 -28065895 + AluSq SINE Alu 1 311 -2 2343 64 4 0 chr15 57630030 57630333 -28065421 + AluY SINE Alu 1 304 0 193 296 14 70 chr15 57630447 57630518 -28065236 - L2 LINE L2 0 3272 3206 * 299 295 23 31 chr15 57630502 57630567 -28065187 - L2 LINE L2 -874 2440 2375 1978 135 54 0 chr15 57630567 57630863 -28064891 + AluSx SINE Alu 1 312 0 299 295 23 31 chr15 57630863 57630926 -28064828 - L2 LINE L2 -939 2375 2313 454 138 383 27 chr15 57631359 57631519 -28064235 - L1MA4A LINE L1 -6 6297 6195 2324 121 3 0 chr15 57631519 57631826 -28063928 - AluSx SINE Alu -4 308 1 454 138 383 27 chr15 57631826 57631853 -28063901 - L1MA4A LINE L1 -108 6195 6043 910 221 62 50 chr15 57631856 57632195 -28063559 + L1M4 LINE L1 4345 4687 -1459 1027 178 0 16 chr15 57632195 57632380 -28063374 - AluJb SINE Alu -14 298 117 363 225 45 34 chr15 57632400 57632489 -28063265 + L1MC4 LINE L1 6614 6703 -1339 1028 123 6 56 chr15 57632489 57632668 -28063086 + AluJb SINE Alu 125 294 -18 697 263 68 16 chr15 57632669 57632920 -28062834 + L1ME1 LINE L1 5898 6161 -5 913 216 59 5 chr15 57632940 57633162 -28062592 + L1ME3A LINE L1 5932 6165 -5 527 265 23 14 chr15 57633267 57633451 -28062303 - MIR SINE MIR -58 150 3 271 269 98 63 chr15 57633957 57634303 -28061451 - LTR16B LTR ERVL -11 453 26 507 271 46 13 chr15 57634809 57634960 -28060794 - MIR SINE MIR -65 197 42 268 298 279 6 chr15 57635011 57635172 -28060582 - MIR SINE MIR -8 254 50 248 159 0 0 chr15 57635572 57635616 -28060138 - LTR31 LTR ERV1 -483 136 93 1202 206 122 93 chr15 57636166 57636596 -28059158 - MLT2E LTR ERVL -7 621 172 3207 158 65 35 chr15 57636596 57637197 -28058557 + LTR31 LTR ERV1 1 619 0 1202 206 122 93 chr15 57637197 57637290 -28058464 - MLT2E LTR ERVL -456 172 83 230 306 28 0 chr15 57637480 57637552 -28058202 - MIR3 SINE MIR -22 186 113 21 57 0 0 chr15 57639162 57639197 -28056557 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr15 57639489 57639519 -28056235 + AT_rich Low_complexity Low_complexity 1 30 0 2216 119 3 6 chr15 57639558 57639870 -28055884 + AluSx SINE Alu 2 312 0 41457 34 23 1 chr15 57640170 57646189 -28049565 - L1PA3 LINE L1 0 6155 5 882 179 6 13 chr15 57646231 57646387 -28049367 + MER5A DNA MER1_type 2 156 -33 1581 204 4 7 chr15 57647131 57647406 -28048348 + AluJo SINE Alu 1 274 -38 381 66 13 53 chr15 57647517 57647593 -28048161 + (GGAAA)n Simple_repeat Simple_repeat 3 75 0 422 277 108 20 chr15 57647595 57648054 -28047700 + L1ME4a LINE L1 5192 5701 -461 875 221 78 39 chr15 57648849 57649156 -28046598 - L1MC4a LINE L1 -1799 6009 5691 361 320 76 12 chr15 57649389 57649561 -28046193 + L1ME4a LINE L1 5935 6117 -4 550 201 7 72 chr15 57649664 57649803 -28045951 - FLAM_C SINE Alu -2 131 2 25 0 0 0 chr15 57650225 57650250 -28045504 + AT_rich Low_complexity Low_complexity 1 25 0 247 276 51 31 chr15 57650312 57650410 -28045344 + L2 LINE L2 2926 3025 -247 2184 122 0 0 chr15 57650415 57650711 -28045043 + AluSx SINE Alu 6 301 -11 1478 208 40 58 chr15 57650817 57651212 -28044542 - MLT1B LTR MaLR 0 390 3 343 0 43 0 chr15 57651294 57651341 -28044413 + (CA)n Simple_repeat Simple_repeat 2 50 0 2342 261 74 32 chr15 57651748 57652798 -28042956 + HAL1 LINE L1 1304 2397 -110 1930 109 173 12 chr15 57652812 57653236 -28042518 - LTR14B LTR ERVK 0 608 1 1861 109 42 71 chr15 57653359 57653692 -28042062 - AluSc SINE Alu 0 309 1 371 101 127 0 chr15 57653749 57653828 -28041926 + L1MA8 LINE L1 6051 6139 -152 1699 136 14 68 chr15 57653837 57654095 -28041659 - L1MA5 LINE L1 -2 6298 6028 189 0 0 0 chr15 57654095 57654116 -28041638 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1794 177 0 0 chr15 57654117 57654400 -28041354 - AluJo SINE Alu -19 293 11 1699 136 14 68 chr15 57654400 57654492 -28041262 - L1MA5 LINE L1 -271 6029 5965 833 155 61 11 chr15 57654492 57654670 -28041084 + L1MA9 LINE L1 6123 6312 0 2220 110 0 23 chr15 57654706 57655043 -28040711 + AluSx SINE Alu 1 312 0 2103 100 11 4 chr15 57655187 57655468 -28040286 + AluSx SINE Alu 22 304 -8 259 248 20 79 chr15 57655546 57655647 -28040107 - MER5B DNA MER1_type -48 130 36 252 185 31 62 chr15 57655666 57655731 -28040023 - MIR3 SINE MIR -37 171 109 1330 66 0 60 chr15 57657234 57657417 -28038337 - AluY SINE Alu -13 298 127 45042 35 4 3 chr15 57657477 57663622 -28032132 - L1PA4 LINE L1 -3 6152 3 807 68 0 185 chr15 57663626 57663788 -28031966 - AluYa5 SINE Alu -179 132 1 2076 115 38 3 chr15 57663969 57664257 -28031497 - AluSx SINE Alu -12 300 3 1891 102 77 14 chr15 57664283 57664591 -28031163 - AluY SINE Alu 0 311 1 2098 123 0 39 chr15 57664854 57665164 -28030590 - AluSq SINE Alu -13 300 3 498 224 72 0 chr15 57667501 57667626 -28028128 + MER94 DNA DNA 1 134 0 1575 211 28 18 chr15 57668553 57668571 -28027183 - L1ME3 LINE L1 -1 6161 6145 1290 161 43 144 chr15 57668571 57668987 -28026767 + MLT1A2 LTR MaLR 1 374 0 1575 211 28 18 chr15 57668987 57669360 -28026394 - L1ME3 LINE L1 -17 6145 5767 736 241 116 15 chr15 57669692 57669891 -28025863 - MIR SINE MIR -43 219 1 412 214 22 22 chr15 57670572 57670661 -28025093 - FRAM/FAM SINE Alu -94 82 1 371 230 0 7 chr15 57670689 57670824 -28024930 + (CA)n Simple_repeat Simple_repeat 2 135 0 1465 233 63 75 chr15 57671076 57671202 -28024552 + MER77 LTR ERV1 54 180 -425 2666 61 0 0 chr15 57671202 57671512 -28024242 + AluY SINE Alu 1 310 -1 1465 233 63 75 chr15 57671512 57671905 -28023849 + MER77 LTR ERV1 180 567 -38 509 167 123 0 chr15 57672684 57672798 -28022956 + MLT1A2 LTR MaLR 1 128 -246 23392 144 35 23 chr15 57672799 57674996 -28020758 + L1M1 LINE L1 23 2192 -5373 2428 54 0 0 chr15 57674996 57675275 -28020479 + AluY SINE Alu 24 302 -9 23392 144 35 23 chr15 57675275 57675890 -28019864 + L1M1 LINE L1 2192 2798 -4767 288 0 0 0 chr15 57675890 57675922 -28019832 + (TA)n Simple_repeat Simple_repeat 2 33 0 1605 191 0 3 chr15 57675922 57676231 -28019523 - AluSg SINE Alu -2 308 1 23392 144 35 23 chr15 57676231 57677246 -28018508 + L1M1 LINE L1 2798 3799 -3766 2214 113 0 6 chr15 57677246 57677557 -28018197 + AluSc SINE Alu 1 309 0 23392 144 35 23 chr15 57677557 57679980 -28015774 + L1M1 LINE L1 3799 6350 -1215 1479 103 30 0 chr15 57680109 57680341 -28015413 + L1MA2 LINE L1 6002 6240 -64 418 251 85 7 chr15 57680951 57681126 -28014628 + MIR3 SINE MIR 10 194 -60 265 286 28 113 chr15 57681378 57681458 -28014296 - L2 LINE L2 -5 3267 3182 369 0 0 0 chr15 57681458 57681499 -28014255 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 265 286 28 113 chr15 57681499 57681631 -28014123 - L2 LINE L2 -90 3182 3073 319 259 24 0 chr15 57682011 57682096 -28013658 + MER5A DNA MER1_type 50 136 -53 2422 191 106 44 chr15 57682128 57682581 -28013173 - MER77 LTR ERV1 -1 604 108 2206 114 0 7 chr15 57682581 57682889 -28012865 + AluSx SINE Alu 5 310 -2 2422 191 106 44 chr15 57682889 57683000 -28012754 - MER77 LTR ERV1 -497 108 5 342 203 25 0 chr15 57683011 57683090 -28012664 + MER5B DNA MER1_type 24 104 -74 807 257 45 37 chr15 57683353 57683598 -28012156 - MLT1A2 LTR MaLR 0 374 128 190 246 0 14 chr15 57683700 57683769 -28011985 + CT-rich Low_complexity Low_complexity 2 69 0 467 292 133 5 chr15 57685000 57685195 -28010559 + MIR SINE MIR 33 252 -10 1948 152 0 13 chr15 57685836 57686138 -28009616 - AluJb SINE Alu -13 299 2 2169 140 0 3 chr15 57686426 57686734 -28009020 + AluSx SINE Alu 1 307 -5 2285 108 3 0 chr15 57687098 57687403 -28008351 + AluSx SINE Alu 1 306 -6 532 308 33 0 chr15 57687403 57687578 -28008176 + L1MC4a LINE L1 5691 5874 -1934 1853 158 10 7 chr15 57687598 57687889 -28007865 + AluJo SINE Alu 3 294 -18 2116 149 13 37 chr15 57688160 57688188 -28007566 + MER47A DNA MER2_type 1 28 -2295 2102 130 10 3 chr15 57688188 57688487 -28007267 - AluSq SINE Alu -12 301 1 2116 149 13 37 chr15 57688487 57688833 -28006921 + MER47A DNA MER2_type 28 366 0 2331 120 34 3 chr15 57688837 57689220 -28006534 + L1MB4 LINE L1 5785 6179 -1 587 262 59 34 chr15 57689325 57689418 -28006336 + MIR SINE MIR 20 109 -153 749 240 123 29 chr15 57689418 57689622 -28006132 - MER58A DNA MER1_type -1 223 1 587 262 59 34 chr15 57689622 57689765 -28005989 + MIR SINE MIR 109 262 0 227 313 12 12 chr15 57690005 57690085 -28005669 - MIR SINE MIR -168 94 15 229 223 120 131 chr15 57690126 57690301 -28005453 + MER20B DNA MER1_type 30 202 -581 277 329 6 38 chr15 57690456 57690614 -28005140 + MIR SINE MIR 38 190 -72 281 325 94 12 chr15 57691503 57691663 -28004091 + MIR SINE MIR 34 206 -56 351 281 99 50 chr15 57691811 57692053 -28003701 - MLT1K LTR MaLR -178 410 157 334 238 36 12 chr15 57692121 57692205 -28003549 + L2 LINE L2 3185 3270 -2 1757 101 4 4 chr15 57692562 57692799 -28002955 - AluSq SINE Alu -5 308 72 374 308 17 8 chr15 57692930 57693050 -28002704 - MIR SINE MIR -139 123 3 233 284 164 45 chr15 57694084 57694218 -28001536 - L2 LINE L2 -34 3238 3089 21 0 0 0 chr15 57694446 57694467 -28001287 + AT_rich Low_complexity Low_complexity 1 21 0 203 342 62 12 chr15 57694678 57694839 -28000915 - L2 LINE L2 -466 2848 2680 2108 62 72 4 chr15 57695917 57696193 -27999561 + AluSx SINE Alu 1 295 -17 904 137 12 42 chr15 57696204 57696372 -27999382 + FRAM SINE Alu 1 163 -13 1016 234 206 12 chr15 57697209 57697530 -27998224 + MLT1G1 LTR MaLR 35 417 -178 3597 117 60 0 chr15 57697531 57698085 -27997669 + LTR38B LTR ERV1 1 587 -23 683 221 55 11 chr15 57698111 57698292 -27997462 + MLT1G1 LTR MaLR 392 580 -10 237 269 30 0 chr15 57698538 57698605 -27997149 - L2 LINE L2 -5 3267 3199 2936 166 40 40 chr15 57698624 57699178 -27996576 - MLT2B3 LTR ERVL 0 554 1 378 74 0 0 chr15 57699539 57699593 -27996161 + (TG)n Simple_repeat Simple_repeat 2 55 0 352 251 166 25 chr15 57699689 57699852 -27995902 + MIR SINE MIR 77 262 0 1992 149 6 16 chr15 57699875 57700190 -27995564 + AluJo SINE Alu 1 312 0 298 241 9 93 chr15 57700330 57700438 -27995316 - MIR SINE MIR -10 252 154 774 154 0 8 chr15 57700438 57700561 -27995193 + AluJb SINE Alu 107 228 -84 284 82 0 20 chr15 57700588 57700637 -27995117 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 2648 55 0 7 chr15 57701341 57701649 -27994105 + AluY SINE Alu 1 306 -5 28 71 0 0 chr15 57701851 57701907 -27993847 + AT_rich Low_complexity Low_complexity 1 56 0 2059 113 16 19 chr15 57703069 57703379 -27992375 - AluSx SINE Alu -3 309 1 460 133 115 18 chr15 57703471 57703584 -27992170 + MER5C DNA MER1_type 1 124 -200 225 275 72 0 chr15 57703710 57703779 -27991975 + MER5C DNA MER1_type 249 322 -2 21 57 0 0 chr15 57703855 57703890 -27991864 + AT_rich Low_complexity Low_complexity 1 35 0 1955 147 3 14 chr15 57704057 57704349 -27991405 + AluSx SINE Alu 1 289 -23 492 245 77 50 chr15 57704361 57704659 -27991095 + L1M4 LINE L1 2478 2783 -3363 340 123 105 0 chr15 57704665 57704722 -27991032 - MER3 DNA MER1_type -5 204 142 2101 125 26 3 chr15 57704729 57705034 -27990720 + AluSx SINE Alu 1 312 0 1016 189 18 0 chr15 57705049 57705218 -27990536 + AluJo SINE Alu 1 172 -140 737 170 50 38 chr15 57705231 57705390 -27990364 - MER3 DNA MER1_type -47 162 2 296 167 88 79 chr15 57705392 57705506 -27990248 + L1M4 LINE L1 2777 2891 -3255 1123 162 0 11 chr15 57705508 57705699 -27990055 + AluSg/x SINE Alu 118 306 -4 303 132 0 0 chr15 57705700 57705753 -27990001 + L1MB8 LINE L1 6126 6178 0 1725 162 28 0 chr15 57705760 57706044 -27989710 + AluJo SINE Alu 1 292 -20 1199 258 105 15 chr15 57706075 57706729 -27989025 + L1ME3A LINE L1 5194 5911 -259 344 260 41 26 chr15 57706729 57706962 -27988792 - L2 LINE L2 -653 2661 2365 2178 116 7 0 chr15 57707078 57707371 -27988383 - AluSx SINE Alu -17 295 1 1918 127 51 7 chr15 57707485 57707761 -27987993 - MER1B DNA MER1_type 0 339 52 609 234 14 103 chr15 57707771 57708053 -27987701 + L1ME2 LINE L1 5682 5938 -226 22 0 0 0 chr15 57708178 57708200 -27987554 + AT_rich Low_complexity Low_complexity 1 22 0 2360 90 0 32 chr15 57708586 57708898 -27986856 - AluSx SINE Alu -10 302 1 381 161 0 0 chr15 57708898 57708954 -27986800 - MSTA LTR MaLR -228 200 145 1595 241 41 22 chr15 57709219 57709708 -27986046 + L2 LINE L2 2816 3313 0 506 210 57 38 chr15 57709936 57710093 -27985661 + MER112 DNA MER1_type 2 161 -99 2348 87 0 3 chr15 57710093 57710382 -27985372 + AluSx SINE Alu 1 288 -24 31 0 0 0 chr15 57710382 57710413 -27985341 + AT_rich Low_complexity Low_complexity 1 31 0 2486 76 0 19 chr15 57710436 57710753 -27985001 + AluY SINE Alu 1 311 0 1812 149 17 10 chr15 57710879 57711167 -27984587 - AluSx SINE Alu -22 290 1 21 0 0 0 chr15 57711291 57711312 -27984442 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr15 57711534 57711558 -27984196 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr15 57711557 57711577 -27984177 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 321 297 22 58 chr15 57712159 57712297 -27983457 - MIR3 SINE MIR -67 141 9 21 36 0 0 chr15 57712320 57712348 -27983406 + AT_rich Low_complexity Low_complexity 1 28 0 2015 146 3 7 chr15 57712375 57712683 -27983071 + AluJb SINE Alu 1 307 -5 325 228 22 152 chr15 57713624 57713765 -27981989 - MIR3 SINE MIR -22 186 73 2420 103 0 0 chr15 57713765 57714077 -27981677 + AluSx SINE Alu 1 312 0 325 228 22 152 chr15 57714077 57714119 -27981635 - MIR3 SINE MIR -135 73 27 820 126 0 8 chr15 57714597 57714716 -27981038 - FLAM_C SINE Alu -25 118 1 1767 139 30 30 chr15 57714724 57715027 -27980727 - AluJb SINE Alu -9 303 1 775 136 7 57 chr15 57715357 57715497 -27980257 + FLAM_C SINE Alu 1 133 0 569 168 75 50 chr15 57715558 57715719 -27980035 + L1ME2 LINE L1 6000 6164 0 472 146 21 62 chr15 57716034 57716130 -27979624 - AluJ/FLAM SINE Alu -213 99 8 715 156 7 64 chr15 57716468 57716609 -27979145 + FLAM_C SINE Alu 1 133 0 618 149 75 50 chr15 57716669 57716830 -27978924 + L1ME2 LINE L1 6000 6164 0 1898 119 9 56 chr15 57717088 57717407 -27978347 + AluSq SINE Alu 10 313 0 457 128 17 34 chr15 57717407 57717518 -27978236 + GA-rich Low_complexity Low_complexity 8 116 0 224 266 43 53 chr15 57718020 57718114 -27977640 - L3 LINE CR1 -4 1573 1481 294 254 239 15 chr15 57718214 57718348 -27977406 + MIR3 SINE MIR 33 196 -12 1791 155 14 14 chr15 57718515 57718806 -27976948 - AluJo SINE Alu -11 301 11 280 98 0 0 chr15 57718822 57718870 -27976884 - FLAM SINE Alu 0 133 91 205 284 111 0 chr15 57719108 57719189 -27976565 + L2 LINE L2 2439 2528 -786 1116 44 7 7 chr15 57720566 57720703 -27975051 + AluSq/x SINE Alu 1 137 -176 1993 63 30 8 chr15 57720706 57720974 -27974780 + LTR19B LTR ERV1 307 580 0 274 81 0 0 chr15 57720974 57721011 -27974743 - AluSq SINE Alu -126 177 141 2031 123 10 0 chr15 57721814 57722107 -27973647 + AluSx SINE Alu 5 300 -12 2459 51 10 3 chr15 57722170 57722464 -27973290 + AluY SINE Alu 1 296 -15 2191 120 0 0 chr15 57722679 57722962 -27972792 - AluSx SINE Alu -29 283 1 246 267 0 0 chr15 57722980 57723040 -27972714 - L2 LINE L2 0 3272 3213 373 269 17 34 chr15 57723271 57723390 -27972364 + MIR3 SINE MIR 43 159 -49 762 236 17 11 chr15 57723391 57723569 -27972185 - MER58A DNA MER1_type 0 224 46 1802 144 49 7 chr15 57724380 57724665 -27971089 + AluSx SINE Alu 1 297 -15 341 176 40 0 chr15 57726567 57726641 -27969113 + MIR SINE MIR 76 152 -110 1665 161 52 3 chr15 57726802 57727093 -27968661 - AluJb SINE Alu -7 305 1 821 194 5 25 chr15 57727122 57727318 -27968436 - L1ME3 LINE L1 -2 6160 5969 1760 141 26 4 chr15 57727323 57727593 -27968161 + AluJo SINE Alu 6 281 -31 28 0 0 0 chr15 57727593 57727621 -27968133 + AT_rich Low_complexity Low_complexity 1 28 0 1903 144 13 17 chr15 57727662 57727960 -27967794 - AluSx SINE Alu -15 297 1 1783 167 3 26 chr15 57728417 57728554 -27967200 + AluJb SINE Alu 1 140 -172 2175 112 0 20 chr15 57728554 57728858 -27966896 + AluSx SINE Alu 1 298 -14 1947 103 81 0 chr15 57728859 57729132 -27966622 + AluSq SINE Alu 2 296 -17 1783 167 3 26 chr15 57729132 57729304 -27966450 + AluJb SINE Alu 139 305 -7 631 226 52 0 chr15 57729452 57729607 -27966147 - MIR SINE MIR -86 176 14 2135 77 27 40 chr15 57730246 57730544 -27965210 - AluSx SINE Alu -13 299 6 1697 168 47 25 chr15 57731661 57732007 -27963747 - MLT1A1 LTR MaLR -17 440 1 1143 156 31 58 chr15 57732020 57732245 -27963509 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr15 57732436 57732458 -27963296 + AT_rich Low_complexity Low_complexity 1 22 0 207 200 0 0 chr15 57732848 57732893 -27962861 + L3 LINE CR1 1531 1575 -2 2186 101 3 3 chr15 57733020 57733306 -27962448 - AluSq SINE Alu -27 286 1 2263 81 7 0 chr15 57733658 57733942 -27961812 - AluSp SINE Alu -27 286 1 2183 118 0 0 chr15 57735370 57735659 -27960095 - AluSg SINE Alu -21 289 1 603 89 33 0 chr15 57735901 57735991 -27959763 + L1PB1 LINE L1 6056 6148 -3 2407 99 0 3 chr15 57736309 57736613 -27959141 - AluSx SINE Alu -9 303 1 313 205 39 0 chr15 57739054 57739132 -27956622 + MIR SINE MIR 60 140 -122 1102 218 57 44 chr15 57740050 57740496 -27955258 + L2 LINE L2 2754 3217 -96 1501 109 4 8 chr15 57740496 57740743 -27955011 + THE1B LTR MaLR 1 363 -1 442 133 78 11 chr15 57740745 57740835 -27954919 + L2 LINE L2 3214 3309 -4 24 0 0 0 chr15 57741058 57741082 -27954672 + AT_rich Low_complexity Low_complexity 1 24 0 646 199 32 65 chr15 57741319 57741505 -27954249 - MER104 DNA MER2_type 0 180 1 2150 125 0 25 chr15 57741608 57741928 -27953826 + AluSx SINE Alu 1 312 0 1950 114 11 0 chr15 57742494 57742756 -27952998 + AluSg SINE Alu 1 265 -45 289 261 99 9 chr15 57742756 57742867 -27952887 - MIR3 SINE MIR -82 126 6 2589 53 0 7 chr15 57743993 57744297 -27951457 - AluY SINE Alu -9 302 1 244 215 46 46 chr15 57744526 57744591 -27951163 - L2 LINE L2 -19 3294 3230 2078 127 7 3 chr15 57745198 57745505 -27950249 - AluSx SINE Alu 0 308 1 1156 240 174 6 chr15 57745598 57746081 -27949673 + L1ME4a LINE L1 5558 6121 0 214 280 40 0 chr15 57746183 57746258 -27949496 + L3b LINE CR1 1316 1393 -190 311 226 65 21 chr15 57746615 57746708 -27949046 + L2 LINE L2 3157 3253 -19 677 149 0 0 chr15 57746969 57747076 -27948678 + AluSg/x SINE Alu 196 302 -8 2026 144 3 3 chr15 57747406 57747711 -27948043 - AluSx SINE Alu -7 305 1 465 279 68 23 chr15 57747853 57748072 -27947682 - L2 LINE L2 -1275 2039 1811 2194 101 0 0 chr15 57748163 57748482 -27947272 + AluSx SINE Alu 9 327 0 508 236 16 0 chr15 57748506 57748629 -27947125 - MER45R DNA AcHobo 0 1581 1457 2270 105 3 3 chr15 57749175 57749479 -27946275 - AluSx SINE Alu -7 305 2 2054 123 24 3 chr15 57749757 57750049 -27945705 - AluJb SINE Alu -14 298 1 246 230 370 0 chr15 57750624 57750724 -27945030 - L2 LINE L2 0 3272 3136 1678 136 45 55 chr15 57750878 57751186 -27944568 - AluJo SINE Alu -7 305 1 2116 127 3 0 chr15 57751250 57751558 -27944196 + AluSx SINE Alu 1 309 -3 1082 163 60 38 chr15 57751562 57751888 -27943866 + L1M4 LINE L1 5151 5489 -695 265 254 0 0 chr15 57751911 57751974 -27943780 + MIR SINE MIR 124 186 -76 2141 131 23 0 chr15 57752693 57752998 -27942756 - AluJb SINE Alu 0 312 1 2164 117 7 0 chr15 57753297 57753595 -27942159 - AluSq SINE Alu -13 300 1 181 303 110 26 chr15 57754450 57754605 -27941149 - L2 LINE L2 -467 2847 2680 2368 119 0 0 chr15 57754807 57755119 -27940635 + AluSx SINE Alu 1 312 0 624 275 103 67 chr15 57755556 57755820 -27939934 + HAL1 LINE L1 772 1025 -1482 3065 115 18 22 chr15 57755820 57755896 -27939858 - L1MB3 LINE L1 0 6183 6108 1718 133 52 75 chr15 57755896 57756280 -27939474 - THE1C LTR MaLR 0 375 1 3065 115 18 22 chr15 57756280 57756708 -27939046 - L1MB3 LINE L1 -75 6108 5681 624 275 103 67 chr15 57756708 57756725 -27939029 + HAL1 LINE L1 1025 1040 -1467 2161 114 7 0 chr15 57756725 57757014 -27938740 + AluSx SINE Alu 1 291 -21 624 275 103 67 chr15 57757014 57757301 -27938453 + HAL1 LINE L1 1040 1362 -1145 344 265 87 32 chr15 57757441 57757681 -27938073 - L2 LINE L2 -257 3056 2792 990 166 78 10 chr15 57758254 57758459 -27937295 - MER20 DNA MER1_type 0 219 1 409 282 45 74 chr15 57758718 57758752 -27937002 - L1MC4a LINE L1 -1913 5895 5862 2477 78 7 0 chr15 57758752 57759060 -27936694 + AluSp SINE Alu 1 310 -3 409 282 45 74 chr15 57759060 57759362 -27936392 - L1MC4a LINE L1 -1946 5862 5569 476 217 0 0 chr15 57760372 57760464 -27935290 + MER5A DNA MER1_type 13 104 -85 885 112 141 82 chr15 57760533 57760739 -27935015 + MER20 DNA MER1_type 2 219 0 191 27 0 108 chr15 57760786 57760823 -27934931 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 1940 135 0 62 chr15 57760963 57761288 -27934466 + AluSx SINE Alu 1 305 -7 2403 86 3 6 chr15 57761420 57761733 -27934021 + AluSx SINE Alu 1 312 0 199 246 41 57 chr15 57761767 57761809 -27933945 - L3b LINE CR1 -133 1450 1409 2585 60 0 0 chr15 57761809 57762109 -27933645 + AluY SINE Alu 1 300 -11 199 246 41 57 chr15 57762109 57762188 -27933566 - L3b LINE CR1 -174 1409 1331 3000 44 3 5 chr15 57762709 57763076 -27932678 + L1PA8 LINE L1 5805 6170 -2 278 314 10 0 chr15 57763488 57763590 -27932164 - MIR3 SINE MIR -38 170 68 251 281 112 0 chr15 57763735 57763824 -27931930 - MIR3 SINE MIR -4 204 106 211 297 164 8 chr15 57763833 57763961 -27931793 - L2 LINE L2 0 3272 3125 415 246 142 44 chr15 57764176 57764260 -27931494 - MIR SINE MIR -33 229 155 2682 42 0 3 chr15 57764260 57764572 -27931182 - AluY SINE Alu 0 311 1 415 246 142 44 chr15 57764572 57764670 -27931084 - MIR SINE MIR -107 155 29 22 0 0 0 chr15 57765723 57765745 -27930009 + GC_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr15 57765792 57765851 -27929903 + GC_rich Low_complexity Low_complexity 1 59 0 314 135 87 87 chr15 57766679 57766783 -27928971 + MIR3 SINE MIR 89 192 -16 242 275 66 33 chr15 57767459 57767550 -27928204 - MIR SINE MIR -111 151 58 1348 157 6 148 chr15 57768188 57768539 -27927215 - AluJo SINE Alu 0 302 2 1009 280 144 31 chr15 57768724 57769150 -27926604 + L2 LINE L2 2060 2436 -836 2077 108 29 0 chr15 57769150 57769465 -27926289 - AluSp SINE Alu 0 323 1 1009 280 144 31 chr15 57769465 57769910 -27925844 + L2 LINE L2 2436 3051 -221 207 274 129 0 chr15 57769984 57770046 -27925708 - MIR SINE MIR -180 82 13 191 200 200 0 chr15 57770132 57770182 -27925572 + MIR SINE MIR 203 262 0 2106 116 17 0 chr15 57770942 57771234 -27924520 - AluSq SINE Alu -16 297 1 277 262 83 48 chr15 57772624 57772769 -27922985 - L2 LINE L2 0 3313 3164 1542 181 24 20 chr15 57772769 57772893 -27922861 + AluJo SINE Alu 1 123 -189 180 0 0 0 chr15 57772893 57772913 -27922841 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1542 181 24 20 chr15 57772913 57773080 -27922674 + AluJo SINE Alu 123 293 -19 2306 107 0 0 chr15 57773084 57773383 -27922371 + AluSq SINE Alu 1 299 -14 377 341 26 30 chr15 57773423 57773483 -27922271 - L2 LINE L2 -133 3180 3121 1711 128 120 0 chr15 57773483 57773749 -27922005 + AluSc SINE Alu 1 298 -1 377 341 26 30 chr15 57773749 57773958 -27921796 - L2 LINE L2 -192 3121 2912 1850 147 50 10 chr15 57773962 57774262 -27921492 + AluJo SINE Alu 1 312 0 2041 140 7 0 chr15 57774476 57774769 -27920985 + AluSx SINE Alu 1 295 -17 199 318 189 0 chr15 57775345 57775493 -27920261 + L2 LINE L2 2630 2805 -509 211 265 80 53 chr15 57775538 57775689 -27920065 + L2 LINE L2 2898 3052 -220 270 252 75 5 chr15 57775812 57775955 -27919799 - MIR SINE MIR -16 246 90 837 86 200 97 chr15 57777629 57777804 -27917950 - MER46A DNA MER2_type -36 200 8 258 159 29 43 chr15 57778647 57778716 -27917038 + (CCCTG)n Simple_repeat Simple_repeat 3 70 0 247 317 39 67 chr15 57778997 57779177 -27916577 - MIR3 SINE MIR -14 194 20 1834 164 3 3 chr15 57779205 57779498 -27916256 + AluJo SINE Alu 1 293 -19 2446 90 0 6 chr15 57779568 57779879 -27915875 + AluY SINE Alu 1 309 -2 980 234 25 4 chr15 57779969 57780204 -27915550 + L1MB4 LINE L1 5940 6179 -1 2031 119 48 0 chr15 57780545 57780838 -27914916 - AluSq SINE Alu -6 307 1 1065 116 7 0 chr15 57780851 57781006 -27914748 - L1MA6 LINE L1 -359 5941 5786 476 194 39 23 chr15 57781005 57781134 -27914620 + L1MA6 LINE L1 6165 6295 -5 * 294 318 56 8 chr15 57782101 57782227 -27913527 + MIR3 SINE MIR 34 165 -43 1021 254 114 24 chr15 57783038 57783459 -27912295 - MLT1C LTR MaLR -8 459 1 509 207 62 7 chr15 57783555 57783700 -27912054 - MIR SINE MIR -2 260 108 744 224 11 17 chr15 57783962 57784141 -27911613 + MER5B DNA MER1_type 1 178 0 363 272 0 35 chr15 57784939 57785108 -27910646 + CT-rich Low_complexity Low_complexity 2 164 0 3781 93 46 44 chr15 57785119 57785732 -27910022 - LTR18B LTR ERVL 0 614 1 2278 155 7 34 chr15 57786603 57786961 -27908793 - Charlie1 DNA MER1_type -403 2358 2011 2352 75 13 10 chr15 57786961 57787266 -27908488 + AluSq SINE Alu 1 306 -7 2278 155 7 34 chr15 57787266 57787320 -27908434 - Charlie1 DNA MER1_type -750 2011 1957 348 271 48 16 chr15 57787420 57787608 -27908146 + L1M4 LINE L1 3155 3348 -2798 1504 134 78 34 chr15 57787674 57787943 -27907811 - AluJo SINE Alu -31 281 1 2837 101 34 2 chr15 57788356 57788763 -27906991 + MSTA LTR MaLR 9 428 0 2409 85 0 3 chr15 57788882 57789188 -27906566 - AluY SINE Alu -6 305 1 2285 97 3 0 chr15 57790561 57790860 -27904894 + AluSc SINE Alu 1 300 -9 182 265 29 15 chr15 57793166 57793234 -27902520 - L3 LINE CR1 -340 1237 1169 825 159 8 15 chr15 57793981 57794113 -27901641 + FLAM_C SINE Alu 1 131 -12 1901 156 3 3 chr15 57794143 57794432 -27901322 + AluSx SINE Alu 1 289 -23 273 239 75 0 chr15 57794714 57794781 -27900973 + HAL1 LINE L1 417 488 -2019 498 206 36 91 chr15 57794782 57794947 -27900807 - MER106B DNA MER1_type -2 1057 902 329 288 46 37 chr15 57795053 57795309 -27900445 + HAL1 LINE L1 479 821 -1686 1681 171 20 0 chr15 57795839 57796137 -27899617 + AluJb SINE Alu 1 304 -8 1564 246 134 50 chr15 57796898 57797238 -27898516 - L1MC5 LINE L1 -50 7911 7601 1085 214 48 13 chr15 57797238 57797467 -27898287 - MER8 DNA MER2_type 0 239 3 1564 246 134 50 chr15 57797467 57797854 -27897900 - L1MC5 LINE L1 -360 7601 7101 1441 196 24 3 chr15 57797854 57798145 -27897609 + AluJo SINE Alu 4 300 -2 1564 246 134 50 chr15 57798145 57798259 -27897495 - L1MC5 LINE L1 -860 7101 6998 668 215 40 7 chr15 57798358 57798507 -27897247 - L1MC5 LINE L1 -1174 6787 6634 2079 111 14 0 chr15 57798915 57799235 -27896519 + AluSx SINE Alu 1 324 0 560 230 15 30 chr15 57800445 57800580 -27895174 - FLAM_C SINE Alu 0 133 1 1625 179 19 7 chr15 57800900 57801208 -27894546 + AluJb SINE Alu 1 312 0 787 76 0 50 chr15 57801315 57801434 -27894320 - L1PA11 LINE L1 0 6174 6062 2365 97 0 7 chr15 57801463 57801773 -27893981 - AluSp SINE Alu -5 308 1 782 193 33 0 chr15 57803175 57803325 -27892429 - AluJb SINE Alu -80 232 78 721 330 17 17 chr15 57803753 57803983 -27891771 + AluJb SINE Alu 11 240 -72 424 256 53 15 chr15 57806029 57806162 -27889592 + L1MC5 LINE L1 7794 7931 -30 2128 120 3 7 chr15 57806324 57806624 -27889130 + AluSq SINE Alu 1 299 -14 311 189 126 11 chr15 57806671 57806766 -27888988 + MER3 DNA MER1_type 71 129 -80 2403 56 28 0 chr15 57807371 57807658 -27888096 + AluY SINE Alu 1 295 -16 640 226 21 59 chr15 57807732 57807918 -27887836 + LTR41 LTR ERVL 1 179 -594 22 0 0 0 chr15 57808150 57808172 -27887582 + AT_rich Low_complexity Low_complexity 1 22 0 1652 158 47 4 chr15 57808172 57808450 -27887304 - AluJo SINE Alu -22 290 1 204 40 0 0 chr15 57809223 57809248 -27886506 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 414 287 66 11 chr15 57810232 57810413 -27885341 + MIR SINE MIR 2 192 -70 390 226 118 34 chr15 57810593 57810741 -27885013 + MIR3 SINE MIR 5 160 -64 2238 117 0 0 chr15 57811499 57811807 -27883947 - AluSx SINE Alu -4 308 1 239 282 197 7 chr15 57812464 57812606 -27883148 + MIR3 SINE MIR 31 199 -9 292 287 70 17 chr15 57812612 57812727 -27883027 + L2 LINE L2 3188 3308 -5 494 264 69 35 chr15 57814326 57814500 -27881254 + MIR SINE MIR 26 205 -57 239 363 6 0 chr15 57815988 57816145 -27879609 + GA-rich Low_complexity Low_complexity 3 160 0 191 279 0 0 chr15 57816275 57816318 -27879436 + MIR SINE MIR 108 150 -58 1739 123 3 39 chr15 57816856 57817140 -27878614 + AluSx SINE Alu 2 275 -37 225 0 0 0 chr15 57817144 57817169 -27878585 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 255 304 176 0 chr15 57817235 57817360 -27878394 + MIR SINE MIR 110 256 -6 213 258 0 0 chr15 57819705 57819767 -27875987 + G-rich Low_complexity Low_complexity 1 62 0 540 84 0 0 chr15 57819945 57820028 -27875726 + (TA)n Simple_repeat Simple_repeat 1 83 0 486 257 184 0 chr15 57822509 57822661 -27873093 - MER5A DNA MER1_type -1 188 9 298 130 56 0 chr15 57822672 57822726 -27873028 - L1M3 LINE L1 -747 5436 5380 236 164 0 18 chr15 57822726 57822781 -27872973 + MER113 DNA MER1_type? 94 147 -374 1380 185 19 0 chr15 57822786 57823045 -27872709 + AluJb SINE Alu 40 303 -9 977 111 6 43 chr15 57823054 57823216 -27872538 + MER5A DNA MER1_type 2 157 -32 273 267 52 43 chr15 57823299 57823415 -27872339 + MER91C DNA MER1_type 24 140 0 195 245 19 0 chr15 57823470 57823523 -27872231 - MIR SINE MIR -76 132 79 226 235 76 0 chr15 57826114 57826182 -27869572 + MIR SINE MIR 74 145 -78 957 146 0 0 chr15 57826610 57826754 -27869000 - FRAM SINE Alu -13 163 20 323 293 150 0 chr15 57826914 57827061 -27868693 - L1M4 LINE L1 -1463 4683 4515 29 0 0 0 chr15 57827903 57827932 -27867822 + AT_rich Low_complexity Low_complexity 1 29 0 660 167 0 9 chr15 57827933 57828041 -27867713 + FLAM_C SINE Alu 2 108 -35 1778 228 68 9 chr15 57828141 57828567 -27867187 - Charlie1a DNA MER1_type -1004 451 1 771 271 6 0 chr15 57828575 57828752 -27867002 - MER5A DNA MER1_type 0 189 12 856 150 8 0 chr15 57828775 57828908 -27866846 - AluJb SINE Alu -178 134 1 591 238 26 7 chr15 57828984 57829135 -27866619 + MER103 DNA DNA 11 164 -2 188 67 33 0 chr15 57829257 57829287 -27866467 + (TCC)n Simple_repeat Simple_repeat 1 31 0 2085 125 0 0 chr15 57829504 57829808 -27865946 - AluSg SINE Alu -6 304 1 196 307 67 0 chr15 57830369 57830444 -27865310 - L2 LINE L2 -188 3084 3005 205 315 135 23 chr15 57830575 57830920 -27864834 - L2 LINE L2 -292 2980 2555 2251 115 0 0 chr15 57831020 57831332 -27864422 + AluSx SINE Alu 1 312 0 240 306 57 48 chr15 57831769 57831893 -27863861 + HAL1 LINE L1 772 896 -1611 778 116 18 67 chr15 57832033 57832109 -27863645 - L1MB3 LINE L1 0 6183 6118 1720 133 52 75 chr15 57832109 57832493 -27863261 - THE1C LTR MaLR 0 375 1 778 116 18 67 chr15 57832493 57832580 -27863174 - L1MB3 LINE L1 -65 6118 6028 1149 81 0 87 chr15 57832680 57832865 -27862889 - AluY SINE Alu -142 169 1 2104 97 7 29 chr15 57832870 57833179 -27862575 - AluSx SINE Alu -10 302 1 538 184 73 18 chr15 57833399 57833508 -27862246 - L2 LINE L2 0 3313 3199 915 193 0 0 chr15 57833640 57833816 -27861938 - AluJb SINE Alu -14 298 123 780 169 0 22 chr15 57834040 57834176 -27861578 + FLAM_C SINE Alu 1 133 0 927 184 62 128 chr15 57834318 57834639 -27861115 + AluJb SINE Alu 2 301 -1 801 216 123 15 chr15 57834640 57834844 -27860910 - MIR SINE MIR -5 257 32 1281 198 17 24 chr15 57834845 57835133 -27860621 - AluJb SINE Alu -3 309 24 1247 183 50 90 chr15 57835336 57835637 -27860117 - AluJb SINE Alu -13 289 1 1586 203 0 3 chr15 57835643 57835939 -27859815 - AluJo SINE Alu -17 295 1 876 234 161 15 chr15 57836044 57836361 -27859393 + MLT1G3 LTR MaLR 170 566 0 513 222 35 28 chr15 57837638 57837706 -27858048 + MER104 DNA Tc2 33 99 -1799 1505 174 48 20 chr15 57837706 57837999 -27857755 - AluJo SINE Alu -11 301 1 513 222 35 28 chr15 57837999 57838074 -27857680 + MER104 DNA Tc2 99 177 -3 26 0 0 0 chr15 57838094 57838120 -27857634 + AT_rich Low_complexity Low_complexity 1 26 0 216 279 49 0 chr15 57838411 57838472 -27857282 - MIR3 SINE MIR -41 167 104 2770 16 0 0 chr15 57838490 57838803 -27856951 - AluYb8 SINE Alu -5 313 1 22 80 0 0 chr15 57838933 57838983 -27856771 + AT_rich Low_complexity Low_complexity 1 50 0 801 265 25 25 chr15 57839791 57839995 -27855759 + MIR SINE MIR 3 206 -56 229 182 182 0 chr15 57840091 57840135 -27855619 - L2 LINE L2 -61 3252 3201 240 335 119 62 chr15 57840572 57840909 -27854845 - L2 LINE L2 -8 3264 2909 2062 145 0 0 chr15 57840910 57841220 -27854534 + AluSx SINE Alu 1 310 -2 207 320 23 39 chr15 57841438 57841566 -27854188 - MIR SINE MIR -32 230 105 1706 154 18 0 chr15 57842268 57842580 -27853174 + AluSx SINE Alu 1 317 0 2164 116 0 7 chr15 57842583 57842893 -27852861 + AluSx SINE Alu 4 311 -1 34 42 0 0 chr15 57843655 57843703 -27852051 + AT_rich Low_complexity Low_complexity 1 48 0 2196 81 3 17 chr15 57843842 57844137 -27851617 - AluSp SINE Alu -20 293 3 22 35 0 0 chr15 57845004 57845033 -27850721 + AT_rich Low_complexity Low_complexity 1 29 0 1347 161 31 34 chr15 57845033 57845325 -27850429 + AluJo SINE Alu 1 291 -21 1517 196 22 0 chr15 57845423 57845726 -27850028 + AluJb SINE Alu 1 309 0 579 184 0 0 chr15 57845726 57845824 -27849930 + FLAM_C SINE Alu 37 134 -9 1970 116 7 0 chr15 57845874 57846167 -27849587 - AluSx SINE Alu -17 295 1 1735 124 38 10 chr15 57846351 57846642 -27849112 - AluSx SINE Alu -13 299 1 350 270 106 42 chr15 57846643 57846832 -27848922 + L1MC5 LINE L1 5270 5470 -2338 211 321 198 0 chr15 57848738 57848819 -27846935 - L2 LINE L2 -8 3264 3168 598 170 0 0 chr15 57848890 57848984 -27846770 + FRAM SINE Alu 62 155 -21 262 226 65 0 chr15 57848987 57849049 -27846705 - L2 LINE L2 -960 2354 2289 196 333 15 0 chr15 57849199 57849265 -27846489 + L2 LINE L2 2986 3052 -220 1258 310 46 26 chr15 57849270 57849731 -27846023 - L2 LINE L2 -497 2817 2348 859 206 13 0 chr15 57849732 57849887 -27845867 + FRAM SINE Alu 1 155 -21 207 146 0 24 chr15 57849890 57849931 -27845823 - L2 LINE L2 -960 2354 2315 195 69 0 0 chr15 57850058 57850087 -27845667 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1702 168 16 23 chr15 57850117 57850421 -27845333 - AluJb SINE Alu -5 307 6 702 223 61 10 chr15 57851297 57851494 -27844260 + L1MC5 LINE L1 5749 5955 -1853 21 0 0 0 chr15 57851494 57851515 -27844239 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 57851543 57851567 -27844187 + AT_rich Low_complexity Low_complexity 1 24 0 470 238 114 114 chr15 57851888 57852468 -27843286 - MER109 Unknown Unknown -1029 1403 250 1976 191 79 141 chr15 57852795 57853932 -27841822 + L1MC5 LINE L1 6563 7616 -345 1872 143 0 10 chr15 57853932 57854246 -27841508 + AluSx SINE Alu 1 311 -1 1976 191 79 141 chr15 57854246 57854378 -27841376 + L1MC5 LINE L1 7616 7755 -206 1203 199 75 11 chr15 57854491 57854772 -27840982 + AluJb SINE Alu 1 299 -13 367 292 146 22 chr15 57854813 57854998 -27840756 - L2 LINE L2 -75 3238 3031 637 170 9 0 chr15 57855008 57855114 -27840640 + AluSq/x SINE Alu 1 107 -206 1351 164 0 0 chr15 57855122 57855336 -27840418 - L1MC1 LINE L1 -17 6316 6103 196 278 165 88 chr15 57855424 57855618 -27840136 + MIR SINE MIR 48 256 -6 1333 254 124 35 chr15 57855798 57856608 -27839146 + HAL1 LINE L1 85 2188 -319 506 258 61 15 chr15 57856611 57856809 -27838945 + HAL1 LINE L1 2240 2446 -61 24 32 0 0 chr15 57856823 57856854 -27838900 + AT_rich Low_complexity Low_complexity 1 31 0 1165 170 5 19 chr15 57856902 57857108 -27838646 - AluJb SINE Alu -15 297 95 2294 206 40 8 chr15 57857209 57857715 -27838039 - L1ME1 LINE L1 -225 5941 5420 377 329 106 36 chr15 57857750 57858248 -27837506 + L2 LINE L2 1185 1717 -1597 313 281 45 0 chr15 57858368 57858457 -27837297 + L2 LINE L2 1961 2053 -1261 1770 241 17 24 chr15 57858463 57858924 -27836830 + LTR40b LTR ERVL 1 458 -4 825 99 0 0 chr15 57858948 57859059 -27836695 - AluJ SINE Alu -201 111 1 643 345 17 51 chr15 57859094 57859508 -27836246 + L2 LINE L2 2077 2476 -838 354 137 0 0 chr15 57859635 57859686 -27836068 + Charlie1 DNA MER1_type 1467 1517 -1244 * 792 95 168 36 chr15 57859676 57859723 -27836031 - MER46A DNA MER2_type -81 155 116 1652 141 98 4 chr15 57859723 57859999 -27835755 + AluSx SINE Alu 3 304 -8 792 95 168 36 chr15 57859999 57860088 -27835666 - MER46A DNA MER2_type -120 116 1 * 1053 239 91 15 chr15 57860088 57860418 -27835336 + Charlie1 DNA MER1_type 1519 1873 -888 2093 91 0 4 chr15 57860418 57860694 -27835060 + AluSx SINE Alu 1 275 -37 399 179 66 9 chr15 57860731 57860810 -27834944 - Charlie1 DNA MER1_type -629 2132 2044 423 0 0 0 chr15 57860810 57860857 -27834897 + (CA)n Simple_repeat Simple_repeat 2 48 0 399 179 66 9 chr15 57860857 57860883 -27834871 - Charlie1 DNA MER1_type -717 2044 2021 369 233 165 27 chr15 57861224 57861452 -27834302 + LTR41 LTR ERVL 446 523 0 454 262 212 39 chr15 57862011 57862295 -27833459 + MER102b DNA MER1_type 1 341 0 21 0 0 0 chr15 57862455 57862476 -27833278 + AT_rich Low_complexity Low_complexity 1 21 0 191 370 14 43 chr15 57862498 57862636 -27833118 + MIR3 SINE MIR 5 138 -70 1889 144 0 0 chr15 57863237 57863521 -27832233 + AluSx SINE Alu 1 284 -28 219 88 0 0 chr15 57863521 57863555 -27832199 + (CATA)n Simple_repeat Simple_repeat 2 35 0 203 286 0 36 chr15 57863878 57863932 -27831822 + A-rich Low_complexity Low_complexity 5 57 -28 1285 179 110 38 chr15 57863932 57864054 -27831700 + AluJo SINE Alu 1 113 -199 2245 95 0 0 chr15 57864054 57864349 -27831405 + AluSx SINE Alu 4 298 -14 1285 179 110 38 chr15 57864349 57864517 -27831237 + AluJo SINE Alu 113 312 0 203 286 0 36 chr15 57864517 57864546 -27831208 + A-rich Low_complexity Low_complexity 57 85 0 183 267 23 70 chr15 57865216 57865302 -27830452 - L3 LINE CR1 -156 1421 1340 1729 147 4 0 chr15 57865613 57865878 -27829876 + AluJb SINE Alu 13 278 -34 194 0 39 0 chr15 57865884 57865910 -27829844 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2006 143 0 3 chr15 57866246 57866554 -27829200 + AluSx SINE Alu 1 307 -5 321 209 101 16 chr15 57866881 57867010 -27828744 + L1ME4a LINE L1 5836 5975 -146 625 204 18 0 chr15 57867493 57867606 -27828148 + FRAM SINE Alu 31 145 -31 1970 158 3 0 chr15 57867739 57868049 -27827705 + AluSx SINE Alu 1 311 -1 1528 157 99 29 chr15 57868365 57868677 -27827077 + MER44D DNA MER2_type 1 604 -5 352 320 53 0 chr15 57868915 57869065 -27826689 + MLT1J LTR MaLR 333 490 -21 1729 150 44 4 chr15 57869489 57869801 -27825953 + AluSx SINE Alu 1 323 0 1550 198 13 22 chr15 57871018 57871331 -27824423 + AluJo SINE Alu 1 310 -2 789 196 0 7 chr15 57871398 57871536 -27824218 + FLAM_C SINE Alu 2 138 -5 1101 191 45 0 chr15 57872077 57872276 -27823478 + MER3 DNA MER1_type 2 209 0 1779 170 0 7 chr15 57874579 57874868 -27820886 + AluJo SINE Alu 5 291 -21 824 333 67 5 chr15 57874873 57875276 -27820478 + L2 LINE L2 2113 2540 -774 951 167 42 0 chr15 57875291 57875506 -27820248 - MER20B DNA MER1_type -46 737 514 1721 168 3 14 chr15 57875552 57875849 -27819905 + AluJo SINE Alu 1 294 -18 2270 67 3 3 chr15 57875849 57876146 -27819608 + AluY SINE Alu 1 297 -14 786 226 0 0 chr15 57876367 57876513 -27819241 - AluJo SINE Alu -160 152 7 976 226 53 0 chr15 57876645 57876853 -27818901 - MER20B DNA MER1_type 0 219 1 2209 106 61 19 chr15 57876986 57877346 -27818408 - THE1C LTR MaLR 0 375 1 895 217 11 0 chr15 57877381 57877561 -27818193 - AluSg/x SINE Alu -10 300 119 1807 150 3 29 chr15 57877700 57878006 -27817748 - AluJo SINE Alu -14 298 1 204 256 0 0 chr15 57878035 57878078 -27817676 + MIR SINE MIR 106 148 -114 871 130 143 0 chr15 57878112 57878266 -27817488 + MER20 DNA MER1_type 1 176 -43 318 253 0 42 chr15 57878414 57878509 -27817245 - MIR SINE MIR -78 130 40 308 277 119 38 chr15 57878471 57878630 -27817124 + MIR3 SINE MIR 6 177 -31 * 331 277 21 71 chr15 57879181 57879322 -27816432 + MER5A DNA MER1_type 52 185 -4 371 231 39 89 chr15 57879336 57879526 -27816228 - MER5B DNA MER1_type -11 167 1 191 195 49 0 chr15 57879526 57879566 -27816188 + MIR3 SINE MIR 153 194 -14 684 317 108 17 chr15 57879640 57880000 -27815754 + Charlie8 DNA MER1_type 38 430 -1987 241 235 73 0 chr15 57880005 57880073 -27815681 + Charlie8 DNA MER1_type 1356 1428 -989 1794 160 4 0 chr15 57880156 57880437 -27815317 + AluSx SINE Alu 1 282 -30 345 24 0 0 chr15 57880444 57880486 -27815268 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr15 57880644 57880664 -27815090 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 220 229 129 0 chr15 57882225 57882295 -27813459 - MIR SINE MIR -96 112 34 207 265 151 30 chr15 57882824 57882990 -27812764 + MIR SINE MIR 7 192 -70 232 295 164 8 chr15 57883765 57883887 -27811867 - MIR SINE MIR -45 217 77 2085 115 10 0 chr15 57883908 57884203 -27811551 - AluSx SINE Alu -14 298 1 2943 256 87 71 chr15 57884354 57885153 -27810601 + HAL1 LINE L1 1 786 -1721 2143 84 0 27 chr15 57885153 57885451 -27810303 - AluSx SINE Alu -22 290 1 2943 256 87 71 chr15 57885451 57885616 -27810138 + HAL1 LINE L1 786 947 -1560 1280 157 49 9 chr15 57885616 57885839 -27809915 + MER46A DNA MER2_type 1 232 -4 2943 256 87 71 chr15 57885839 57885960 -27809794 + HAL1 LINE L1 947 1065 -1442 1536 152 59 24 chr15 57885960 57886249 -27809505 + AluJb SINE Alu 1 299 -13 2943 256 87 71 chr15 57886249 57886900 -27808854 + HAL1 LINE L1 1065 1767 -740 21 0 0 0 chr15 57887557 57887578 -27808176 + GC_rich Low_complexity Low_complexity 1 21 0 207 176 0 0 chr15 57888097 57888131 -27807623 - L2 LINE L2 -12 3260 3227 * 250 279 164 0 chr15 57888101 57888223 -27807531 - MIR SINE MIR -10 252 111 216 228 152 43 chr15 57888403 57888495 -27807259 + MIR SINE MIR 161 262 0 2059 113 10 16 chr15 57889504 57889814 -27805940 + AluSx SINE Alu 4 311 -1 1690 171 50 3 chr15 57889882 57890180 -27805574 + AluJo SINE Alu 1 312 0 212 0 36 0 chr15 57890188 57890216 -27805538 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 862 228 24 19 chr15 57890316 57890527 -27805227 - MIR SINE MIR -23 239 28 2095 133 0 0 chr15 57890977 57891285 -27804469 + AluSq SINE Alu 5 312 -1 323 271 84 19 chr15 57891452 57891559 -27804195 - MIR SINE MIR -72 136 23 333 0 0 0 chr15 57891876 57891911 -27803843 + (TG)n Simple_repeat Simple_repeat 1 72 0 333 0 0 0 chr15 57891911 57891948 -27803806 + (TG)n Simple_repeat Simple_repeat 2 38 0 572 196 0 0 chr15 57892070 57892167 -27803587 - AluS SINE Alu -215 98 2 1111 223 58 69 chr15 57892170 57892381 -27803373 - LTR37B LTR ERV1 -5 463 251 2174 110 0 0 chr15 57892381 57892673 -27803081 + AluSx SINE Alu 1 292 -20 1111 223 58 69 chr15 57892673 57892801 -27802953 - LTR37B LTR ERV1 -217 251 128 814 209 51 0 chr15 57892801 57892978 -27802776 + MER5A DNA MER1_type 2 187 -2 1111 223 58 69 chr15 57892978 57893099 -27802655 - LTR37B LTR ERV1 -340 128 7 1817 126 3 21 chr15 57893258 57893543 -27802211 - AluSx SINE Alu -16 296 17 250 264 43 8 chr15 57894028 57894126 -27801628 - MIR3 SINE MIR -38 170 70 1253 163 4 25 chr15 57894177 57894417 -27801337 - AluJb SINE Alu -21 291 57 500 213 98 6 chr15 57896530 57896694 -27799060 - MIR SINE MIR -33 229 51 195 220 51 0 chr15 57901356 57901415 -27794339 + MIR SINE MIR 84 145 -117 2151 118 0 0 chr15 57901589 57901893 -27793861 - AluSx SINE Alu -8 304 1 270 185 19 0 chr15 57904371 57904425 -27791329 + MIR SINE MIR 86 140 -68 212 286 170 0 chr15 57905393 57905505 -27790249 - MIR SINE MIR -56 152 22 219 88 0 0 chr15 57905550 57905584 -27790170 + (TG)n Simple_repeat Simple_repeat 1 34 0 239 284 37 12 chr15 57905881 57905962 -27789792 - MIR SINE MIR -61 147 65 343 273 139 21 chr15 57906677 57906864 -27788890 - MIR SINE MIR -32 230 22 233 286 92 25 chr15 57908387 57908506 -27787248 + MIR SINE MIR 70 196 -66 197 298 83 41 chr15 57908654 57908775 -27786979 + MIR3 SINE MIR 42 167 -41 526 343 19 0 chr15 57912210 57912420 -27783334 + MIR SINE MIR 49 262 0 2121 98 0 3 chr15 57913581 57913922 -27781832 + AluSx SINE Alu 1 340 0 241 279 11 60 chr15 57914318 57914501 -27781253 + G-rich Low_complexity Low_complexity 3 176 0 276 307 60 13 chr15 57914668 57914833 -27780921 - MIR SINE MIR -62 146 26 578 257 66 0 chr15 57915906 57916042 -27779712 - MIR SINE MIR -23 239 95 345 306 108 26 chr15 57916172 57916404 -27779350 + L2 LINE L2 2917 3167 -105 342 305 59 34 chr15 57916990 57917187 -27778567 + MIR SINE MIR 21 225 -37 420 232 39 23 chr15 57918705 57918860 -27776894 + MIR SINE MIR 56 211 -51 294 200 46 0 chr15 57919256 57919321 -27776433 - MIR SINE MIR -55 153 86 380 302 218 20 chr15 57919406 57919608 -27776146 - MIR SINE MIR -19 243 2 235 322 56 0 chr15 57919613 57919703 -27776051 + MIR3 SINE MIR 60 154 -54 272 345 18 9 chr15 57920891 57921004 -27774750 - MIR3 SINE MIR -87 121 8 2277 87 0 10 chr15 57922350 57922650 -27773104 - AluSq SINE Alu -8 305 9 2932 195 94 41 chr15 57922666 57923234 -27772520 + MER45B DNA AcHobo 136 673 -908 2483 129 47 28 chr15 57923234 57923659 -27772095 + Tigger2a DNA MER2_type 1 433 -1 2932 195 94 41 chr15 57923659 57923806 -27771948 + MER45B DNA AcHobo 673 811 -770 2156 118 0 13 chr15 57923806 57924121 -27771633 + AluSx SINE Alu 1 311 -1 2932 195 94 41 chr15 57924121 57924205 -27771549 + MER45B DNA AcHobo 811 978 -62 368 253 33 60 chr15 57924887 57925037 -27770717 + MIR3 SINE MIR 45 190 -18 264 337 0 11 chr15 57925268 57925363 -27770391 - MIR SINE MIR -1 261 168 311 276 47 8 chr15 57925603 57925730 -27770024 - MIR3 SINE MIR -17 191 60 1754 194 24 12 chr15 57926541 57926876 -27768878 + L1MD2 LINE L1 6006 6344 -15 476 353 69 18 chr15 57928630 57928964 -27766790 + L2 LINE L2 2494 2844 -470 1642 122 8 4 chr15 57928969 57929215 -27766539 + AluSg/x SINE Alu 65 311 -1 489 261 62 16 chr15 57929429 57929617 -27766137 - MIR SINE MIR -6 256 25 355 202 75 0 chr15 57929624 57929718 -27766036 - MER103 DNA DNA -15 151 51 1017 167 15 45 chr15 57929718 57929916 -27765838 - AluJb SINE Alu -4 308 117 585 244 0 8 chr15 57930203 57930352 -27765402 + MIR SINE MIR 3 149 -61 1741 138 85 0 chr15 57930353 57930636 -27765118 + AluSq SINE Alu 1 307 -6 1992 164 3 0 chr15 57931078 57931389 -27764365 - AluSx SINE Alu 0 312 1 271 294 11 33 chr15 57931842 57931934 -27763820 + MIR3 SINE MIR 90 179 -29 398 297 21 28 chr15 57932268 57932413 -27763341 + MIR SINE MIR 35 178 -84 * 420 236 13 0 chr15 57932401 57932498 -27763256 - MIR SINE MIR -63 145 63 204 319 29 0 chr15 57932548 57932617 -27763137 + L2 LINE L2 3212 3282 -31 201 283 0 0 chr15 57933086 57933139 -27762615 + (CCG)n Simple_repeat Simple_repeat 1 53 0 326 349 70 12 chr15 57933265 57933437 -27762317 + MIR SINE MIR 25 206 -56 249 347 76 18 chr15 57934521 57934746 -27761008 + L2 LINE L2 2813 3050 -222 356 169 114 0 chr15 57935329 57935410 -27760344 + MIR SINE MIR 61 150 -63 403 318 15 51 chr15 57936036 57936204 -27759550 + MER5A DNA MER1_type 1 163 -26 768 160 96 32 chr15 57936204 57936360 -27759394 - AluJo SINE Alu 0 302 137 403 318 15 51 chr15 57936360 57936386 -27759368 + MER5A DNA MER1_type 163 188 -1 235 361 0 49 chr15 57936386 57936508 -27759246 - MIR3 SINE MIR -36 172 57 23 33 0 0 chr15 57936663 57936693 -27759061 + GC_rich Low_complexity Low_complexity 1 30 0 357 269 148 9 chr15 57936996 57937104 -27758650 + MIR SINE MIR 13 135 -127 1659 87 128 8 chr15 57937148 57937414 -27758340 - AluSg1 SINE Alu -11 298 1 1035 233 58 70 chr15 57937414 57938059 -27757695 + L2 LINE L2 2608 3241 -72 1704 150 0 49 chr15 57938059 57938366 -27757388 - AluJo SINE Alu -20 292 1 900 134 0 8 chr15 57938376 57938510 -27757244 - AluJo SINE Alu -169 133 1 230 312 22 72 chr15 57938589 57938727 -27757027 + MIR SINE MIR 132 262 0 426 83 0 139 chr15 57939033 57939088 -27756666 - Charlie4 DNA MER1_type -60 1901 1867 2172 127 0 0 chr15 57939088 57939395 -27756359 + AluSx SINE Alu 1 307 -5 426 83 0 139 chr15 57939395 57939447 -27756307 - Charlie4 DNA MER1_type -94 1867 1809 1564 179 8 0 chr15 57939453 57939716 -27756038 + AluJb SINE Alu 1 265 -47 228 67 0 0 chr15 57940252 57940282 -27755472 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 21 36 0 0 chr15 57940299 57940327 -27755427 + GC_rich Low_complexity Low_complexity 1 28 0 194 54 0 54 chr15 57940339 57940376 -27755378 + (CCCCG)n Simple_repeat Simple_repeat 1 35 0 185 270 68 40 chr15 57940546 57940620 -27755134 - L3 LINE CR1 -1353 224 149 220 320 207 16 chr15 57941146 57941533 -27754221 + L2 LINE L2 560 1020 -2294 213 326 97 72 chr15 57941539 57941898 -27753856 + L2 LINE L2 1313 1662 -1652 712 215 0 15 chr15 57941898 57942033 -27753721 + FLAM_A SINE Alu 1 133 0 213 326 97 72 chr15 57942033 57942044 -27753710 + L2 LINE L2 1662 1671 -1643 1666 154 3 75 chr15 57942044 57942362 -27753392 + AluJb SINE Alu 4 298 -14 213 326 97 72 chr15 57942362 57942475 -27753279 + L2 LINE L2 1671 1809 -1505 613 311 48 45 chr15 57942661 57942950 -27752804 - L2 LINE L2 -57 3256 2967 841 183 6 12 chr15 57942955 57943119 -27752635 + FRAM SINE Alu 1 162 -14 2049 96 6 26 chr15 57943138 57943450 -27752304 + AluSx SINE Alu 1 306 -6 267 345 118 25 chr15 57943475 57943678 -27752076 + L2 LINE L2 2999 3220 -52 279 228 65 43 chr15 57994308 57994400 -27701354 + LTR16C LTR ERVL 388 481 -10 1127 219 23 0 chr15 57994451 57994666 -27701088 - MER58A DNA MER1_type 0 224 5 618 229 95 1 chr15 57995006 57995267 -27700487 - MER46C DNA MER2_type 0 338 18 24 0 0 0 chr15 57996030 57996054 -27699700 + AT_rich Low_complexity Low_complexity 1 24 0 999 137 6 60 chr15 57996058 57996223 -27699531 - AluSg/x SINE Alu -21 289 133 2091 123 10 0 chr15 57996223 57996525 -27699229 - AluSx SINE Alu -7 305 1 999 137 6 60 chr15 57996525 57996542 -27699212 - AluSg/x SINE Alu -177 133 117 34 42 0 0 chr15 57997138 57997186 -27698568 + AT_rich Low_complexity Low_complexity 1 48 0 610 27 0 0 chr15 57997263 57997336 -27698418 + tRNA-Lys-AAG tRNA tRNA 1 73 -3 2106 83 0 123 chr15 57997503 57997852 -27697902 + AluSg SINE Alu 1 306 -4 264 103 69 17 chr15 57997981 57998039 -27697715 + FAM SINE Alu 119 179 0 311 246 195 10 chr15 57998093 57998272 -27697482 + L1MEc LINE L1 1531 1733 -843 1638 117 93 4 chr15 57998272 57998520 -27697234 - AluY SINE Alu -19 292 23 699 202 58 29 chr15 57998523 57998731 -27697023 - Charlie1 DNA MER1_type -491 2270 2057 339 257 69 0 chr15 57998731 57998832 -27696922 + ERVL LTR ERVL 3938 4045 -1719 789 229 148 9 chr15 57998903 57999113 -27696641 + MLT1G1 LTR MaLR 357 595 0 419 203 13 0 chr15 57999150 57999229 -27696525 + ERVL LTR ERVL 4247 4326 -1159 231 114 0 0 chr15 57999387 57999422 -27696332 + (A)n Simple_repeat Simple_repeat 1 35 0 2144 118 7 7 chr15 57999732 58000037 -27695717 + AluSx SINE Alu 2 306 -6 514 241 241 0 chr15 58000422 58000613 -27695141 + Charlie1 DNA MER1_type 1 237 -2524 1602 158 6 71 chr15 58000667 58000845 -27694909 - AluJb SINE Alu -20 292 141 2367 94 0 0 chr15 58000845 58001143 -27694611 + AluY SINE Alu 1 298 -13 1602 158 6 71 chr15 58001143 58001275 -27694479 - AluJb SINE Alu -171 141 2 442 178 50 20 chr15 58001358 58001459 -27694295 + U6 snRNA snRNA 3 106 -1 2103 131 10 0 chr15 58001681 58001987 -27693767 - AluSg SINE Alu -1 309 1 249 266 82 38 chr15 58002206 58002364 -27693390 + L1ME LINE L1 40 204 -5866 918 154 54 0 chr15 58002588 58002737 -27693017 + FRAM SINE Alu 1 156 -20 1685 184 4 0 chr15 58002849 58003126 -27692628 + AluJb SINE Alu 17 294 -18 1395 81 0 6 chr15 58003504 58003678 -27692076 - AluSp SINE Alu -138 175 3 2537 170 93 62 chr15 58005206 58006081 -27689673 + LTR13 LTR ERVK 53 1007 0 1656 110 4 4 chr15 58006646 58006874 -27688880 + AluSg/x SINE Alu 74 301 -11 1990 125 27 0 chr15 58006902 58007198 -27688556 + AluSp SINE Alu 1 304 -9 462 137 14 0 chr15 58007208 58007281 -27688473 + AluS SINE Alu 2 75 -237 441 165 105 53 chr15 58007630 58007763 -27687991 + MER117 DNA MER1_type 8 147 -50 339 162 0 54 chr15 58007802 58007876 -27687878 - MER4A LTR ERV1 -537 127 58 1715 125 0 8 chr15 58008063 58008311 -27687443 + AluSc SINE Alu 57 302 -7 1934 109 27 17 chr15 58008313 58008606 -27687148 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr15 58008611 58008639 -27687115 + AT_rich Low_complexity Low_complexity 1 28 0 1220 35 0 0 chr15 58008706 58008847 -27686907 + MER107 DNA MER1_type 5 145 -52 233 56 0 28 chr15 58008847 58008883 -27686871 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2339 101 3 0 chr15 58009090 58009397 -27686357 + AluSp SINE Alu 1 308 -5 183 297 154 11 chr15 58009514 58009605 -27686149 - MIR SINE MIR -8 254 151 2300 95 0 0 chr15 58009664 58009960 -27685794 + AluSg SINE Alu 1 296 -14 183 80 0 0 chr15 58010527 58010552 -27685202 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 455 101 38 0 chr15 58010652 58010731 -27685023 + AluSp/q SINE Alu 232 313 0 1886 159 11 0 chr15 58010757 58011040 -27684714 + AluSx SINE Alu 1 286 -26 1994 113 21 10 chr15 58012325 58012616 -27683138 + AluSx SINE Alu 1 294 -18 365 161 222 0 chr15 58013180 58013261 -27682493 + MER58 DNA MER1_type 2318 2416 -4 229 219 0 0 chr15 58013613 58013654 -27682100 + Charlie5 DNA MER1_type 39 79 -2533 248 204 37 19 chr15 58013655 58013709 -27682045 + Tigger5 DNA MER2_type 1 55 -2268 * 297 183 42 14 chr15 58013679 58013750 -27682004 + Tigger5 DNA MER2_type 2250 2322 -1 473 301 73 5 chr15 58013862 58014068 -27681686 - MIR SINE MIR -6 256 37 246 274 0 0 chr15 58014092 58014154 -27681600 - L1MC5 LINE L1 -389 7572 7511 246 263 95 21 chr15 58014299 58014394 -27681360 - L1MC5 LINE L1 -600 7361 7260 21 0 0 0 chr15 58014590 58014611 -27681143 + AT_rich Low_complexity Low_complexity 1 21 0 557 149 0 11 chr15 58015269 58015363 -27680391 - FRAM SINE Alu -55 121 29 1316 172 86 21 chr15 58015523 58015802 -27679952 - AluJo SINE Alu -10 302 6 2030 99 21 0 chr15 58015914 58016198 -27679556 + AluSq SINE Alu 2 291 -22 1840 64 0 0 chr15 58016911 58017144 -27678610 - AluY SINE Alu -78 233 1 387 304 118 6 chr15 58018053 58018214 -27677540 + MIR SINE MIR 76 254 -8 2065 109 3 7 chr15 58019112 58019415 -27676339 - AluSp SINE Alu -11 302 1 935 98 0 0 chr15 58019416 58019539 -27676215 - AluSg1 SINE Alu -185 124 2 2273 88 0 0 chr15 58019551 58019848 -27675906 - AluSg SINE Alu -13 297 1 1997 130 14 0 chr15 58020545 58020838 -27674916 - AluSx SINE Alu -15 297 1 481 141 107 66 chr15 58020846 58020967 -27674787 - FLAM_A SINE Alu -5 137 12 844 159 43 25 chr15 58021436 58021599 -27674155 - AluJo SINE Alu -15 297 132 2159 93 10 10 chr15 58022124 58022435 -27673319 + AluSq SINE Alu 1 311 -2 710 163 15 30 chr15 58023837 58023972 -27671782 - AluJo SINE Alu -169 133 1 1967 97 0 0 chr15 58024111 58024379 -27671375 + AluSg SINE Alu 6 273 -37 705 198 0 0 chr15 58024420 58024536 -27671218 - FLAM_A SINE Alu -17 116 1 2376 130 119 15 chr15 58025353 58025823 -27669931 + L1MA7 LINE L1 5768 6286 -5 504 254 177 29 chr15 58026417 58026640 -27669114 + MIR SINE MIR 14 262 0 239 213 267 0 chr15 58026645 58026720 -27669034 - MIR SINE MIR -164 98 4 1771 264 96 30 chr15 58026995 58027039 -27668715 - MER45C DNA AcHobo -661 920 880 1803 139 60 0 chr15 58027039 58027320 -27668434 + AluSg SINE Alu 1 298 -12 1771 264 96 30 chr15 58027320 58028063 -27667691 - MER45C DNA AcHobo -701 880 1 395 236 0 45 chr15 58028075 58028164 -27667590 - MER81 DNA DNA -26 88 4 2172 86 7 0 chr15 58028277 58028568 -27667186 - AluSp SINE Alu -5 308 16 1507 268 88 43 chr15 58028669 58029303 -27666451 + ERVL LTR ERVL 4711 5373 -391 574 160 160 103 chr15 58029574 58029787 -27665967 + LTR50 LTR ERVL 8 232 -563 26 21 0 42 chr15 58030087 58030119 -27665635 + AT_rich Low_complexity Low_complexity 1 32 -14 1841 105 11 11 chr15 58030119 58030386 -27665368 - AluSx SINE Alu -21 291 25 26 21 0 42 chr15 58030386 58030401 -27665353 + AT_rich Low_complexity Low_complexity 32 46 0 553 251 85 62 chr15 58030457 58030868 -27664886 - MLT1H1 LTR MaLR -2 553 152 1226 86 0 0 chr15 58030885 58031047 -27664707 - AluY SINE Alu -9 302 141 249 257 71 49 chr15 58032494 58032677 -27663077 - LTR33 LTR ERVL 0 521 335 872 276 36 0 chr15 58032774 58032999 -27662755 + MIR SINE MIR 16 248 -14 1272 115 6 0 chr15 58033153 58033335 -27662419 - AluSg/x SINE Alu -19 293 111 2210 113 3 0 chr15 58033640 58033949 -27661805 - AluSg SINE Alu 0 310 1 219 36 0 0 chr15 58034207 58034235 -27661519 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1973 107 4 4 chr15 58034237 58034517 -27661237 - AluSc SINE Alu -29 280 1 2330 116 2 114 chr15 58034620 58035076 -27660678 + MLT1C LTR MaLR 7 411 -56 34 24 0 0 chr15 58035121 58035162 -27660592 + AT_rich Low_complexity Low_complexity 1 41 0 338 252 86 14 chr15 58036121 58036260 -27659494 + L1MC5 LINE L1 7507 7655 -306 573 249 27 41 chr15 58036280 58036501 -27659253 + L1MC5 LINE L1 7709 7926 -35 377 269 80 58 chr15 58036532 58036772 -27658982 + L1MC5 LINE L1 7225 7415 -393 1828 181 56 62 chr15 58036887 58036977 -27658777 - Charlie4a DNA MER1_type -1483 478 389 2238 85 3 3 chr15 58036977 58037272 -27658482 - AluSp SINE Alu -16 297 3 1828 181 56 62 chr15 58037272 58037379 -27658375 - Charlie4a DNA MER1_type -1572 389 283 2175 113 0 0 chr15 58037379 58037681 -27658073 - AluSg SINE Alu -8 302 1 1828 181 56 62 chr15 58037681 58037846 -27657908 - Charlie4a DNA MER1_type -1678 283 116 2078 102 0 20 chr15 58037846 58038149 -27657605 - AluY SINE Alu -14 297 1 1828 181 56 62 chr15 58038149 58038265 -27657489 - Charlie4a DNA MER1_type -1845 116 1 1570 106 44 0 chr15 58038292 58038518 -27657236 + AluSx SINE Alu 1 236 -76 1777 94 0 0 chr15 58038615 58038849 -27656905 + AluSp SINE Alu 1 234 -79 251 257 14 0 chr15 58038975 58039045 -27656709 - MER96B DNA MER1_type? -346 71 1 1007 222 77 0 chr15 58039110 58039331 -27656423 - LTR39 LTR ERV1 0 783 546 898 170 0 0 chr15 58039334 58039487 -27656267 + FRAM SINE Alu 1 153 -23 342 127 0 0 chr15 58039487 58039558 -27656196 + (CCA)n Simple_repeat Simple_repeat 1 71 0 2401 71 3 0 chr15 58039561 58039871 -27655883 + AluY SINE Alu 1 311 0 3015 135 85 2 chr15 58039891 58040396 -27655358 - LTR39 LTR ERV1 -225 558 12 2211 85 3 3 chr15 58040543 58040858 -27654896 - AluSp SINE Alu 0 315 1 493 302 22 14 chr15 58040878 58041017 -27654737 + L2 LINE L2 3172 3311 -2 * 940 273 74 0 chr15 58041012 58041228 -27654526 - MIR SINE MIR 0 262 31 1078 163 79 0 chr15 58041228 58041431 -27654323 - MER20 DNA MER1_type 0 219 1 1934 89 57 0 chr15 58041439 58041719 -27654035 - AluSx SINE Alu -16 296 1 2340 154 82 76 chr15 58041911 58042101 -27653653 + LTR39 LTR ERV1 269 456 -327 1880 118 0 14 chr15 58042101 58042280 -27653474 - AluSx SINE Alu 0 312 137 2196 100 0 7 chr15 58042280 58042579 -27653175 - AluSc SINE Alu -12 297 1 1880 118 0 14 chr15 58042579 58042715 -27653039 - AluSx SINE Alu -175 137 1 2340 154 82 76 chr15 58042715 58043035 -27652719 + LTR39 LTR ERV1 456 783 0 513 242 77 45 chr15 58043197 58043393 -27652361 - MIR SINE MIR -62 146 16 756 225 94 75 chr15 58043630 58044004 -27651750 + MLT1F LTR MaLR 162 542 0 260 341 56 0 chr15 58044004 58044130 -27651624 + L2 LINE L2 3181 3313 0 1630 158 4 0 chr15 58045845 58046111 -27649643 + AluJo SINE Alu 1 267 -45 225 0 0 0 chr15 58046119 58046144 -27649610 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2077 127 0 0 chr15 58046547 58046846 -27648908 - AluSx SINE Alu -13 299 1 408 105 0 0 chr15 58047244 58047301 -27648453 - AluSq/x SINE Alu -188 124 68 2197 108 0 0 chr15 58047413 58047719 -27648035 - AluSq SINE Alu -7 306 1 829 73 0 0 chr15 58048153 58048262 -27647492 - AluSq/x SINE Alu -203 109 1 22 0 0 0 chr15 58048278 58048300 -27647454 + AT_rich Low_complexity Low_complexity 1 22 0 2131 120 0 0 chr15 58048812 58049112 -27646642 + AluSx SINE Alu 1 300 -12 258 174 0 0 chr15 58049134 58049180 -27646574 - MIR SINE MIR -170 92 47 1769 150 0 22 chr15 58049469 58049783 -27645971 - AluJo SINE Alu -5 307 1 209 150 50 17 chr15 58049791 58049851 -27645903 + T-rich Low_complexity Low_complexity 3 64 0 1269 166 25 4 chr15 58050011 58050252 -27645502 + MER33 DNA MER1_type 9 254 -70 634 162 68 6 chr15 58050265 58050505 -27645249 + AluJb SINE Alu 2 301 -11 1813 165 0 9 chr15 58050507 58050822 -27644932 + AluJb SINE Alu 1 312 0 330 206 0 15 chr15 58050832 58050900 -27644854 + MER33 DNA MER1_type 297 363 0 23 0 0 0 chr15 58050977 58051000 -27644754 + AT_rich Low_complexity Low_complexity 1 23 0 675 219 64 105 chr15 58051012 58051335 -27644419 - L1MC4 LINE L1 -130 7912 7604 558 189 74 0 chr15 58051335 58051457 -27644297 - FLAM_C SINE Alu -2 131 1 675 219 64 105 chr15 58051457 58051494 -27644260 - L1MC4 LINE L1 -438 7604 7567 261 0 0 0 chr15 58051494 58051523 -27644231 + (TG)n Simple_repeat Simple_repeat 2 30 0 1539 174 0 40 chr15 58051523 58051827 -27643927 - AluJo SINE Alu -20 292 1 426 266 0 0 chr15 58051900 58052013 -27643741 - MER63A DNA MER1_type 0 210 98 1422 211 50 6 chr15 58052071 58052394 -27643360 + MER31B LTR ERV1 130 466 0 258 214 57 0 chr15 58052422 58052492 -27643262 - MER63A DNA MER1_type 0 74 1 344 233 97 0 chr15 58052495 58052598 -27643156 - L1MC4 LINE L1 -489 7553 7441 2073 84 0 0 chr15 58052647 58052939 -27642815 + AluSg SINE Alu 17 308 0 722 248 69 0 chr15 58052965 58053183 -27642571 + L2 LINE L2 3081 3313 0 1091 136 0 0 chr15 58053481 58053636 -27642118 + AluSx SINE Alu 1 155 -157 1016 115 0 0 chr15 58053746 58053894 -27641860 + AluSc SINE Alu 162 309 0 664 201 152 15 chr15 58054452 58054656 -27641098 + L1MC4a LINE L1 5683 5914 -1894 2236 99 3 0 chr15 58055246 58055549 -27640205 - AluSx SINE Alu -8 304 1 609 286 31 13 chr15 58056080 58056307 -27639447 + MIR SINE MIR 28 258 -4 276 240 67 48 chr15 58057591 58057695 -27638059 + MIR SINE MIR 56 161 -101 1158 214 81 66 chr15 58057695 58058162 -27637592 - MER113 DNA MER1_type? -44 477 4 653 236 25 42 chr15 58058171 58058260 -27637494 - MER112 DNA MER1_type -7 253 164 698 132 14 97 chr15 58058260 58058404 -27637350 + FLAM_C SINE Alu 1 132 -1 653 236 25 42 chr15 58058404 58058555 -27637199 - MER112 DNA MER1_type -96 164 17 1845 156 3 29 chr15 58058661 58058975 -27636779 - AluJb SINE Alu -6 306 1 1527 95 50 9 chr15 58059445 58059666 -27636088 + MER30 DNA MER1_type 1 230 0 234 0 0 0 chr15 58059715 58059741 -27636013 + (CA)n Simple_repeat Simple_repeat 2 27 0 457 285 121 19 chr15 58060876 58061083 -27634671 + MIR SINE MIR 22 249 -13 914 118 0 7 chr15 58061418 58061554 -27634200 + AluJo SINE Alu 1 135 -177 350 253 11 81 chr15 58061563 58061705 -27634049 - MIR SINE MIR -64 144 32 2231 68 16 7 chr15 58061915 58062223 -27633531 - AluY SINE Alu 0 311 1 1587 155 12 43 chr15 58062227 58062549 -27633205 - AluJb SINE Alu 0 312 1 1354 181 104 3 chr15 58062549 58062837 -27632917 - L1MB7 LINE L1 -257 5927 5611 1147 107 79 0 chr15 58062840 58063018 -27632736 - AluSq SINE Alu -12 301 110 662 186 0 0 chr15 58063045 58063169 -27632585 - L1MB7 LINE L1 -2354 3792 3669 202 286 14 57 chr15 58063527 58063597 -27632157 + L2 LINE L2 3205 3271 -1 261 57 0 0 chr15 58063622 58063657 -27632097 + (CCCCCT)n Simple_repeat Simple_repeat 6 40 0 2020 78 35 11 chr15 58063657 58063940 -27631814 - AluSx SINE Alu -22 290 1 448 266 70 0 chr15 58064195 58064353 -27631401 + L1MC3 LINE L1 7616 7784 -1 2231 93 0 0 chr15 58064421 58064711 -27631043 - AluSg SINE Alu -20 290 1 578 291 199 43 chr15 58064795 58065031 -27630723 - L1M4 LINE L1 -1355 4791 4593 1997 125 3 3 chr15 58065031 58065327 -27630427 + AluSg SINE Alu 1 296 -14 578 291 199 43 chr15 58065327 58065598 -27630156 - L1M4 LINE L1 -1553 4593 4205 2048 104 54 7 chr15 58065786 58066084 -27629670 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 58066149 58066173 -27629581 + AT_rich Low_complexity Low_complexity 1 24 0 1864 103 0 27 chr15 58066174 58066437 -27629317 - AluSx SINE Alu -55 257 2 560 290 60 25 chr15 58068685 58068721 -27627033 - MER113 DNA MER1_type? -78 443 410 2173 105 3 0 chr15 58068721 58069017 -27626737 - AluSx SINE Alu -15 297 1 560 290 60 25 chr15 58069017 58069263 -27626491 - MER113 DNA MER1_type? -111 410 151 1937 129 3 23 chr15 58070121 58070424 -27625330 - AluSx SINE Alu -15 297 1 248 325 127 13 chr15 58070481 58070638 -27625116 + MIR SINE MIR 54 228 -34 415 291 9 0 chr15 58071420 58071530 -27624224 + MER5B DNA MER1_type 28 138 -40 598 322 62 0 chr15 58072102 58072329 -27623425 + MIR SINE MIR 22 262 0 344 301 20 26 chr15 58072636 58072789 -27622965 + MLT1I LTR MaLR 258 409 0 2325 78 3 3 chr15 58073714 58074021 -27621733 + AluSg1 SINE Alu 1 307 -2 225 300 227 0 chr15 58075251 58075361 -27620393 - MIR SINE MIR -50 212 78 258 200 200 0 chr15 58075549 58075619 -27620135 + L2 LINE L2 3187 3270 -2 2236 85 0 3 chr15 58075670 58076006 -27619748 + AluSx SINE Alu 1 335 0 206 308 13 13 chr15 58076671 58076749 -27619005 + MIR SINE MIR 46 123 -139 233 247 151 43 chr15 58077053 58077146 -27618608 + L2 LINE L2 3149 3251 -21 521 317 27 0 chr15 58078581 58078767 -27616987 + MIR SINE MIR 2 192 -70 284 267 107 15 chr15 58079078 58079209 -27616545 + MIR3 SINE MIR 3 145 -63 182 314 15 95 chr15 58080108 58080245 -27615509 + L3 LINE CR1 1296 1421 -156 942 169 21 21 chr15 58080706 58080895 -27614859 + MER53 DNA DNA 1 189 0 543 272 13 16 chr15 58081340 58081508 -27614246 - MER5B DNA MER1_type -9 180 2 1781 93 8 0 chr15 58081595 58081841 -27613913 - AluSg SINE Alu 0 310 63 2361 74 3 0 chr15 58082055 58082352 -27613402 - AluSp SINE Alu -15 298 1 4067 150 31 9 chr15 58083267 58083510 -27612244 - L1MA4 LINE L1 -5 6295 6059 2234 102 0 0 chr15 58083510 58083805 -27611949 + AluSx SINE Alu 1 295 -17 4067 150 31 9 chr15 58083805 58084300 -27611454 - L1MA4 LINE L1 -241 6059 5541 727 242 84 18 chr15 58084782 58085009 -27610745 + L1ME3A LINE L1 5926 6167 -3 2195 86 20 0 chr15 58085029 58085330 -27610424 + AluSx SINE Alu 1 307 -5 651 291 23 0 chr15 58085341 58085513 -27610241 - MER58A DNA MER1_type 0 224 49 776 145 0 32 chr15 58085735 58085991 -27609763 + AluJ SINE Alu 12 308 -4 1950 198 67 98 chr15 58085992 58086099 -27609655 - Charlie2 DNA MER1_type -171 2691 2582 2200 117 0 0 chr15 58086099 58086408 -27609346 + AluSq SINE Alu 1 309 -4 1950 198 67 98 chr15 58086408 58086567 -27609187 - Charlie2 DNA MER1_type -280 2582 2420 2350 88 3 0 chr15 58086567 58086873 -27608881 + AluSg SINE Alu 1 307 -3 1950 198 67 98 chr15 58086873 58086933 -27608821 - Charlie2 DNA MER1_type -442 2420 2360 2420 50 0 13 chr15 58086933 58087235 -27608519 + AluY SINE Alu 1 298 -13 1950 198 67 98 chr15 58087235 58087626 -27608128 - Charlie2 DNA MER1_type -502 2360 1999 2140 120 10 0 chr15 58087626 58087935 -27607819 - AluSx SINE Alu 0 312 1 1950 198 67 98 chr15 58087935 58088048 -27607706 - Charlie2 DNA MER1_type -863 1999 1884 423 248 47 8 chr15 58088153 58088282 -27607472 - Charlie2 DNA MER1_type -2647 135 2 1595 125 102 4 chr15 58088674 58088952 -27606802 - AluSx SINE Alu 0 303 1 1151 221 82 4 chr15 58088952 58089233 -27606521 + MER58B DNA MER1_type 39 341 0 202 111 0 44 chr15 58090521 58090566 -27605188 + (CGGGG)n Simple_repeat Simple_repeat 2 44 0 221 311 0 44 chr15 58090756 58090939 -27604815 + C-rich Low_complexity Low_complexity 3 177 0 298 287 0 54 chr15 58090999 58091166 -27604588 + C-rich Low_complexity Low_complexity 3 160 0 214 309 0 54 chr15 58091184 58091333 -27604421 + C-rich Low_complexity Low_complexity 2 142 0 270 313 6 45 chr15 58091374 58091553 -27604201 + C-rich Low_complexity Low_complexity 1 172 0 296 161 43 75 chr15 58092064 58092157 -27603597 - MIR SINE MIR -81 181 92 1460 157 80 28 chr15 58092241 58092527 -27603227 - AluJb SINE Alu -7 305 5 217 324 44 0 chr15 58092664 58092732 -27603022 - MER5A DNA MER1_type -56 133 63 370 266 29 99 chr15 58093183 58093416 -27602338 + MIR3 SINE MIR 12 229 -33 1309 211 125 77 chr15 58093653 58094198 -27601556 + MLT1E2 LTR MaLR 71 626 0 416 252 100 52 chr15 58094321 58094377 -27601377 - MIR SINE MIR -31 231 179 1973 126 3 3 chr15 58094377 58094679 -27601075 - AluSx SINE Alu -1 311 10 416 252 100 52 chr15 58094679 58094832 -27600922 - MIR SINE MIR -83 179 12 294 283 41 34 chr15 58095189 58095344 -27600410 - MIR SINE MIR -11 251 96 232 235 0 0 chr15 58095440 58095491 -27600263 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 204 143 0 0 chr15 58095528 58095570 -27600184 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 2245 88 0 0 chr15 58095984 58096279 -27599475 - AluSq SINE Alu -10 303 9 754 181 16 22 chr15 58096279 58096461 -27599293 - MER96B DNA MER1_type? -236 181 1 273 207 0 0 chr15 58097967 58098025 -27597729 - L1MB5 LINE L1 -6 6168 6111 2081 192 13 10 chr15 58098107 58098498 -27597256 - L1MB5 LINE L1 -9 6165 5774 192 97 0 0 chr15 58098498 58098529 -27597225 + (TG)n Simple_repeat Simple_repeat 2 32 0 1279 90 6 6 chr15 58098529 58098706 -27597048 - AluSg/x SINE Alu -27 285 109 1705 140 0 54 chr15 58098711 58099025 -27596729 - AluJo SINE Alu -15 297 1 2539 167 11 7 chr15 58099025 58099486 -27596268 - L1MB5 LINE L1 -393 5785 5323 1008 141 6 6 chr15 58099486 58099649 -27596105 - AluSq SINE Alu -19 294 132 749 202 42 0 chr15 58099651 58099844 -27595910 - L1MB5 LINE L1 -825 5321 5121 204 294 100 35 chr15 58100010 58100180 -27595574 - L2 LINE L2 -175 3097 2917 313 271 71 13 chr15 58100245 58100400 -27595354 - L2 LINE L2 -903 2411 2248 796 211 18 44 chr15 58100993 58101220 -27594534 - MER96B DNA MER1_type? -196 221 1 1040 208 77 0 chr15 58101285 58101506 -27594248 - LTR39 LTR ERV1 0 783 546 879 171 7 0 chr15 58101509 58101661 -27594093 + FRAM SINE Alu 1 153 -23 351 151 0 0 chr15 58101661 58101735 -27594019 + (CCA)n Simple_repeat Simple_repeat 1 77 -9 2296 84 7 0 chr15 58101735 58102044 -27593710 + AluY SINE Alu 1 311 0 351 151 0 0 chr15 58102044 58102055 -27593699 + (CCA)n Simple_repeat Simple_repeat 76 86 0 672 184 17 39 chr15 58102064 58102243 -27593511 - LTR39 LTR ERV1 -225 558 384 2134 129 7 0 chr15 58103818 58104127 -27591627 - AluSx SINE Alu -1 311 1 1266 176 19 0 chr15 58105472 58105682 -27590072 + MER20 DNA MER1_type 4 217 -2 328 194 52 73 chr15 58105767 58105947 -27589807 - HsTC2 DNA Tc2 -3 1895 1 254 296 82 15 chr15 58106922 58107057 -27588697 + MIR3 SINE MIR 43 186 -22 476 276 33 44 chr15 58107614 58107795 -27587959 + MIR3 SINE MIR 21 199 -9 773 326 73 63 chr15 58110800 58111236 -27584518 + L1M4 LINE L1 4121 4565 -1581 2214 107 0 28 chr15 58111236 58111554 -27584200 + AluSx SINE Alu 1 309 -3 773 326 73 63 chr15 58111554 58111657 -27584097 + L1M4 LINE L1 4565 4665 -1481 2152 118 0 0 chr15 58111952 58112249 -27583505 - AluSx SINE Alu -15 297 1 26 30 0 0 chr15 58112259 58112292 -27583462 + AT_rich Low_complexity Low_complexity 1 33 0 338 280 11 91 chr15 58112304 58112479 -27583275 + L1MDa LINE L1 1914 2074 -4466 625 306 196 23 chr15 58112498 58113014 -27582740 + L1M4 LINE L1 3474 4078 -2068 1984 121 4 0 chr15 58113017 58113331 -27582423 + AluSx SINE Alu 1 315 0 348 325 251 0 chr15 58113839 58114030 -27581724 + MIR SINE MIR 14 252 -10 217 331 39 0 chr15 58114458 58114588 -27581166 + L3 LINE CR1 1224 1358 -219 292 335 112 19 chr15 58114646 58114807 -27580947 + MIR SINE MIR 67 242 -20 387 271 89 40 chr15 58115656 58115878 -27579876 - MIR SINE MIR -19 243 8 509 268 23 6 chr15 58116152 58116311 -27579443 + MIR SINE MIR 33 192 -63 279 260 48 10 chr15 58117821 58117925 -27577829 - MIR SINE MIR -75 133 26 704 87 58 17 chr15 58118802 58119153 -27576601 + (TG)n Simple_repeat Simple_repeat 1 365 0 505 229 0 70 chr15 58120627 58120669 -27575085 + MLT1C LTR MaLR 321 364 -103 1992 139 0 7 chr15 58120669 58120971 -27574783 - AluSx SINE Alu -12 300 1 505 229 0 70 chr15 58120971 58121018 -27574736 + MLT1C LTR MaLR 364 413 -54 2173 112 3 6 chr15 58121018 58121331 -27574423 - AluSx SINE Alu 0 312 1 505 229 0 70 chr15 58121331 58121397 -27574357 + MLT1C LTR MaLR 413 466 -1 222 297 108 38 chr15 58121709 58121894 -27573860 + L2 LINE L2 3049 3246 -26 231 365 63 0 chr15 58122229 58122355 -27573399 - MIR SINE MIR -109 153 20 264 100 0 0 chr15 58122464 58122504 -27573250 + (TG)n Simple_repeat Simple_repeat 1 40 0 190 245 255 0 chr15 58122802 58122896 -27572858 - MIR SINE MIR -81 181 64 863 206 23 68 chr15 58123020 58123191 -27572563 + MER3 DNA MER1_type 1 161 -48 2240 101 0 10 chr15 58123191 58123497 -27572257 + AluSq SINE Alu 1 303 -10 863 206 23 68 chr15 58123497 58123544 -27572210 + MER3 DNA MER1_type 161 209 0 593 284 38 7 chr15 58126086 58126285 -27569469 + MIR SINE MIR 3 212 -50 44 46 0 0 chr15 58127540 58127605 -27568149 + AT_rich Low_complexity Low_complexity 1 65 0 360 255 20 10 chr15 58127631 58127733 -27568021 + MER103 DNA DNA 14 116 -50 528 203 223 0 chr15 58127749 58127897 -27567857 - MER5A DNA MER1_type 0 189 9 203 247 49 37 chr15 58128118 58128199 -27567555 + MIR SINE MIR 83 143 -65 266 194 15 0 chr15 58128248 58128315 -27567439 + (CA)n Simple_repeat Simple_repeat 1 68 0 263 268 189 24 chr15 58128850 58129014 -27566740 + L2 LINE L2 2864 3054 -218 202 274 0 20 chr15 58130303 58130354 -27565400 - MIR SINE MIR -67 141 92 329 240 89 44 chr15 58130572 58130729 -27565025 - MIR SINE MIR -65 197 42 395 224 9 0 chr15 58131451 58131558 -27564196 + CT-rich Low_complexity Low_complexity 3 110 0 271 186 93 41 chr15 58132345 58132442 -27563312 + L1MEd LINE L1 34 135 -5984 614 265 54 7 chr15 58132451 58132471 -27563283 + L1M4 LINE L1 5664 5682 -479 1963 132 0 0 chr15 58132471 58132758 -27562996 + AluSx SINE Alu 5 291 -21 614 265 54 7 chr15 58132758 58132895 -27562859 + L1M4 LINE L1 5682 5826 -335 1879 138 13 20 chr15 58133283 58133588 -27562166 - AluJb SINE Alu -7 305 3 1965 92 96 0 chr15 58133597 58133878 -27561876 - AluSg SINE Alu -2 308 1 305 389 90 13 chr15 58134248 58134482 -27561272 + L1MEd LINE L1 850 1101 -5018 2802 189 71 0 chr15 58134501 58135021 -27560733 + LTR64 LTR ERVK 2 558 0 2187 98 3 3 chr15 58135455 58135760 -27559994 - AluSg SINE Alu -5 305 1 2019 121 6 16 chr15 58135760 58136074 -27559680 - AluSx SINE Alu 0 312 2 353 330 0 0 chr15 58136179 58136285 -27559469 + MER117 DNA MER1_type 92 197 0 1213 107 0 0 chr15 58137603 58137771 -27557983 + AluJb SINE Alu 133 300 -12 536 319 30 64 chr15 58137923 58138252 -27557502 + L2 LINE L2 2898 3215 -57 1870 120 0 32 chr15 58138401 58138685 -27557069 - AluSx SINE Alu -2 310 36 321 237 56 12 chr15 58138845 58138953 -27556801 - MIR SINE MIR -61 147 45 4533 92 16 50 chr15 58139797 58140370 -27555384 + L1PB1 LINE L1 5468 6015 -136 2054 102 0 17 chr15 58140370 58140713 -27555041 + AluSc SINE Alu 1 338 0 4533 92 16 50 chr15 58140713 58140845 -27554909 + L1PB1 LINE L1 6015 6150 -1 358 233 67 0 chr15 58141337 58141427 -27554327 + MIR SINE MIR 79 174 -88 223 297 10 130 chr15 58143106 58143298 -27552456 - MER5A DNA MER1_type -9 180 12 234 273 99 33 chr15 58143868 58143989 -27551765 - MIR3 SINE MIR -21 187 59 325 265 37 74 chr15 58144287 58144449 -27551305 + MIR3 SINE MIR 53 208 0 215 160 0 60 chr15 58144788 58144838 -27550916 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 253 60 25 chr15 58146263 58146384 -27549370 - MIR SINE MIR -63 145 30 2262 189 146 12 chr15 58146508 58147001 -27548753 + MLT1F1 LTR MaLR 1 559 -8 192 331 108 34 chr15 58147109 58147257 -27548497 + MIR3 SINE MIR 48 206 -2 735 221 167 22 chr15 58147393 58147615 -27548139 + MIR SINE MIR 5 258 -4 585 279 81 0 chr15 58147699 58147871 -27547883 - MIR SINE MIR -70 192 7 2300 90 0 0 chr15 58147893 58148192 -27547562 + AluSq SINE Alu 1 299 -14 2327 81 0 0 chr15 58148628 58148926 -27546828 + AluY SINE Alu 1 298 -13 185 308 103 9 chr15 58149249 58149356 -27546398 - L2 LINE L2 -226 3046 2930 820 155 20 9 chr15 58149636 58149979 -27545775 + (CA)n Simple_repeat Simple_repeat 1 347 0 541 190 17 11 chr15 58150039 58150213 -27545541 + (CA)n Simple_repeat Simple_repeat 1 176 0 2672 115 3 3 chr15 58150213 58150577 -27545177 + THE1B LTR MaLR 1 364 0 732 150 19 0 chr15 58150592 58150752 -27545002 + (CA)n Simple_repeat Simple_repeat 2 164 0 335 151 0 41 chr15 58151594 58151667 -27544087 + MER4A LTR ERV1 58 127 -537 462 228 71 0 chr15 58151706 58151833 -27543921 - MER117 DNA MER1_type -50 147 12 291 321 188 0 chr15 58153744 58153856 -27541898 - MIR SINE MIR -12 250 118 355 324 61 14 chr15 58153993 58154141 -27541613 + L2 LINE L2 2882 3036 -277 253 316 0 68 chr15 58154617 58154750 -27541004 + MIR3 SINE MIR 67 190 -18 1559 281 73 2 chr15 58156076 58156607 -27539147 + L2 LINE L2 2088 2656 -658 531 208 0 0 chr15 58157315 58157445 -27538309 + GA-rich Low_complexity Low_complexity 2 131 0 504 245 10 17 chr15 58158358 58158572 -27537182 + LTR16A LTR ERVL 55 330 -120 234 321 12 12 chr15 58158642 58158726 -27537028 - MIR SINE MIR -89 119 36 1837 157 6 25 chr15 58158964 58159282 -27536472 - AluSx SINE Alu 0 312 1 2245 107 0 16 chr15 58159304 58159621 -27536133 - AluSx SINE Alu 0 312 1 1069 297 66 49 chr15 58159995 58160644 -27535110 + L1ME4a LINE L1 5450 6109 -12 509 243 15 29 chr15 58161079 58161215 -27534539 - MER45A DNA AcHobo 0 178 45 259 354 16 16 chr15 58161373 58161500 -27534254 + MIR SINE MIR 20 146 -116 234 250 0 17 chr15 58161996 58162056 -27533698 - MIR SINE MIR -63 145 87 208 216 0 27 chr15 58162478 58162552 -27533202 + GA-rich Low_complexity Low_complexity 1 72 0 483 132 0 158 chr15 58163032 58163146 -27532608 - MER1A DNA MER1_type 0 529 434 1173 82 0 0 chr15 58163247 58163393 -27532361 - AluSq/x SINE Alu -167 146 1 2916 123 0 0 chr15 58163393 58163801 -27531953 - MER1A DNA MER1_type -121 408 1 572 331 112 56 chr15 58164107 58164672 -27531082 - L1MC/D LINE L1 -759 5387 4786 1659 132 83 7 chr15 58164672 58164961 -27530793 + AluJo SINE Alu 2 312 0 572 331 112 56 chr15 58164961 58165389 -27530365 - L1MC/D LINE L1 -1360 4786 4383 1555 184 31 0 chr15 58165407 58165695 -27530059 - AluJo SINE Alu -15 297 1 254 208 91 52 chr15 58165636 58165713 -27530041 - AluSp SINE Alu -102 201 122 381 295 299 2 chr15 58165760 58166228 -27529526 + L2 LINE L2 2353 2959 -355 206 118 0 0 chr15 58166268 58166302 -27529452 + (GA)n Simple_repeat Simple_repeat 2 35 0 320 210 14 133 chr15 58166534 58166677 -27529077 - L2 LINE L2 0 3313 3188 * 404 181 19 86 chr15 58166661 58166702 -27529052 - MER91C DNA MER1_type -35 105 63 697 179 24 167 chr15 58166702 58166953 -27528801 + MER58C DNA MER1_type 1 215 0 404 181 19 86 chr15 58166953 58167016 -27528738 - MER91C DNA MER1_type -77 63 8 298 302 115 0 chr15 58167468 58167607 -27528147 - MER117 DNA MER1_type -36 161 7 220 280 27 0 chr15 58168275 58168350 -27527404 + MIR SINE MIR 45 121 -87 976 221 97 21 chr15 58168734 58169023 -27526731 - L1MC/D LINE L1 -2234 3912 3602 257 354 10 0 chr15 58169050 58169146 -27526608 - MIR SINE MIR -15 247 151 301 265 205 8 chr15 58169457 58169574 -27526180 - L3 LINE CR1 -17 1560 1421 518 253 25 13 chr15 58169851 58170009 -27525745 + L2 LINE L2 2887 3046 -226 384 178 14 0 chr15 58170814 58170887 -27524867 + MER5A DNA MER1_type 26 99 -90 247 309 84 42 chr15 58171209 58171400 -27524354 + L2 LINE L2 2149 2347 -967 779 205 50 45 chr15 58171813 58171944 -27523810 + MER115 DNA AcHobo 488 622 -71 1211 203 14 5 chr15 58171944 58172161 -27523593 - MER20 DNA MER1_type 0 219 1 779 205 50 45 chr15 58172161 58172229 -27523525 + MER115 DNA AcHobo 622 688 -5 185 259 74 0 chr15 58172687 58172741 -27523013 + L2 LINE L2 3138 3195 -77 256 227 47 0 chr15 58172810 58172879 -27522875 + MIR SINE MIR 93 168 -40 410 223 59 14 chr15 58172881 58172987 -27522767 + MER5A DNA MER1_type 3 103 -75 248 313 136 15 chr15 58173560 58173758 -27521996 + L3 LINE CR1 1197 1418 -159 874 244 46 5 chr15 58174008 58174225 -27521529 + MIR SINE MIR 23 248 -14 376 272 16 115 chr15 58174225 58174416 -27521338 - Charlie8 DNA MER1_type -2244 173 2 289 257 62 26 chr15 58175443 58175556 -27520198 + MIR3 SINE MIR 44 160 -48 2608 161 11 7 chr15 58175609 58176049 -27519705 - L1MB3 LINE L1 -3 6180 5739 231 391 109 7 chr15 58176509 58176647 -27519107 + L2 LINE L2 3121 3272 0 237 383 104 41 chr15 58178164 58178433 -27517321 - L2 LINE L2 -93 3179 2894 1885 113 49 0 chr15 58178617 58178901 -27516853 + AluSx SINE Alu 1 298 -14 716 238 100 0 chr15 58179387 58179547 -27516207 + MER45A DNA AcHobo 3 178 0 419 261 87 60 chr15 58179561 58179745 -27516009 + MER63A DNA MER1_type 1 189 -21 620 268 53 24 chr15 58180089 58180421 -27515333 + MLT1I LTR MaLR 26 409 0 249 128 0 0 chr15 58181022 58181069 -27514685 + (GA)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chr15 58181203 58181225 -27514529 + (CA)n Simple_repeat Simple_repeat 2 23 0 404 273 154 47 chr15 58181501 58181885 -27513869 - L2 LINE L2 -3 3269 2841 205 138 0 0 chr15 58181889 58181918 -27513836 + (TGAG)n Simple_repeat Simple_repeat 3 31 0 552 209 86 7 chr15 58182105 58182277 -27513477 + MIR3 SINE MIR 1 188 -56 1383 268 71 75 chr15 58182462 58183051 -27512703 + MER45C DNA AcHobo 42 628 -325 409 214 300 0 chr15 58183271 58183411 -27512343 - MER5A DNA MER1_type -1 188 7 492 300 64 10 chr15 58183613 58183816 -27511938 - MIR SINE MIR -33 229 17 219 159 23 0 chr15 58184697 58184741 -27511013 + CT-rich Low_complexity Low_complexity 2 46 0 358 143 0 36 chr15 58184741 58184825 -27510929 + (TTTCC)n Simple_repeat Simple_repeat 3 83 0 1188 100 0 4 chr15 58185193 58185499 -27510255 + (TTCCC)n Simple_repeat Simple_repeat 1 483 0 366 266 0 11 chr15 58185525 58185619 -27510135 - MIR3 SINE MIR -3 205 113 549 42 0 0 chr15 58186006 58186078 -27509676 + (CA)n Simple_repeat Simple_repeat 2 73 0 1729 219 110 15 chr15 58186978 58187449 -27508305 + MLT1E2 LTR MaLR 111 626 0 24 0 0 0 chr15 58187454 58187478 -27508276 + AT_rich Low_complexity Low_complexity 1 24 0 2691 231 65 8 chr15 58187484 58188190 -27507564 - L1ME2 LINE L1 -1 6163 5418 371 337 73 33 chr15 58188349 58188571 -27507183 + L2 LINE L2 2628 2867 -447 2043 128 0 28 chr15 58188571 58188890 -27506864 - AluSx SINE Alu -2 310 1 371 337 73 33 chr15 58188890 58188967 -27506787 + L2 LINE L2 2867 2939 -375 271 267 47 7 chr15 58189455 58189605 -27506149 + (TCCA)n Simple_repeat Simple_repeat 2 157 0 252 260 110 24 chr15 58189608 58189735 -27506019 - L2 LINE L2 -3 3310 3173 292 324 95 18 chr15 58190013 58190202 -27505552 - MIR3 SINE MIR -6 202 3 214 200 22 0 chr15 58190979 58191024 -27504730 - L2 LINE L2 -54 3218 3173 314 173 40 13 chr15 58191157 58191232 -27504522 + MIR SINE MIR 184 260 -2 239 288 0 38 chr15 58191270 58191350 -27504404 - L2 LINE L2 -173 3099 3023 215 31 31 0 chr15 58191982 58192014 -27503740 + (GA)n Simple_repeat Simple_repeat 1 33 0 365 300 77 0 chr15 58192233 58192363 -27503391 - MIR SINE MIR -65 197 58 182 269 120 9 chr15 58192364 58192472 -27503282 - L2 LINE L2 -13 3259 3140 198 351 53 0 chr15 58193018 58193112 -27502642 + L2 LINE L2 2564 2662 -652 311 356 93 5 chr15 58193359 58193564 -27502190 - MIR SINE MIR -20 242 20 251 114 23 0 chr15 58193802 58193846 -27501908 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 338 294 68 51 chr15 58194336 58194513 -27501241 + MIR3 SINE MIR 3 182 -26 367 296 0 0 chr15 58194514 58194595 -27501159 - L1MC4 LINE L1 -1346 6696 6616 318 261 23 34 chr15 58194548 58194636 -27501118 + L1MC4 LINE L1 6617 6703 -1339 * 227 182 30 30 chr15 58194639 58194705 -27501049 - L1MC4 LINE L1 -1340 6702 6637 236 375 55 0 chr15 58195128 58195256 -27500498 + L2 LINE L2 3138 3272 0 595 233 147 0 chr15 58196615 58196778 -27498976 + MIR SINE MIR 72 258 -4 24 0 0 0 chr15 58196783 58196807 -27498947 + AT_rich Low_complexity Low_complexity 1 24 0 207 269 0 0 chr15 58197328 58197380 -27498374 + CT-rich Low_complexity Low_complexity 2 53 0 2038 127 0 31 chr15 58197388 58197710 -27498044 - AluSx SINE Alu 0 312 1 2564 52 0 0 chr15 58198304 58198613 -27497141 - AluY SINE Alu -2 309 1 408 207 290 21 chr15 58199828 58199973 -27495781 + MER5A DNA MER1_type 6 189 0 394 295 62 8 chr15 58200163 58200292 -27495462 + MER5A DNA MER1_type 43 178 -11 310 209 0 15 chr15 58201129 58201196 -27494558 - MER5B DNA MER1_type -111 67 2 551 226 9 17 chr15 58201674 58201789 -27493965 + MER81 DNA DNA 1 114 0 428 310 82 0 chr15 58202233 58202324 -27493430 + MER5B DNA MER1_type 8 90 -88 201 39 0 0 chr15 58202324 58202350 -27493404 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 428 310 82 0 chr15 58202350 58202416 -27493338 + MER5B DNA MER1_type 90 178 0 303 313 78 52 chr15 58203263 58203455 -27492299 + MIR SINE MIR 32 228 -34 243 146 0 0 chr15 58204168 58204209 -27491545 + (TG)n Simple_repeat Simple_repeat 1 41 0 575 249 53 71 chr15 58205391 58205616 -27490138 + L1MC4a LINE L1 5674 5894 -1914 220 299 0 0 chr15 58205626 58205693 -27490061 + (TA)n Simple_repeat Simple_repeat 1 67 0 251 236 0 0 chr15 58206914 58206969 -27488785 + L2 LINE L2 3258 3312 -1 209 338 73 34 chr15 58207399 58207633 -27488121 + L2 LINE L2 2615 2857 -457 292 305 64 32 chr15 58207675 58207862 -27487892 + L2 LINE L2 3075 3267 -5 203 290 0 29 chr15 58208126 58208195 -27487559 - L2 LINE L2 -594 2720 2654 832 298 94 20 chr15 58208249 58208601 -27487153 + MLT1I LTR MaLR 32 409 0 346 279 30 55 chr15 58208601 58208766 -27486988 - L2 LINE L2 -679 2635 2475 289 218 128 0 chr15 58209053 58209131 -27486623 - MIR SINE MIR -128 134 47 768 278 37 25 chr15 58209703 58209948 -27485806 + MIR SINE MIR 14 261 -1 321 336 69 45 chr15 58211205 58211500 -27484254 - L2 LINE L2 -234 3038 2745 304 287 104 0 chr15 58211797 58211912 -27483842 + L2 LINE L2 3145 3271 -1 196 143 143 0 chr15 58212444 58212493 -27483261 + MIR SINE MIR 123 178 -84 337 337 101 0 chr15 58214149 58214304 -27481450 + MIR3 SINE MIR 25 197 -11 532 284 147 10 chr15 58214362 58214559 -27481195 - MIR SINE MIR -5 257 34 320 269 42 50 chr15 58215184 58215303 -27480451 + MIR3 SINE MIR 83 200 -8 24 32 0 0 chr15 58215516 58215547 -27480207 + GC_rich Low_complexity Low_complexity 1 31 0 225 94 0 0 chr15 58216947 58216965 -27478789 + (CA)n Simple_repeat Simple_repeat 1 50 0 225 94 0 0 chr15 58216965 58216997 -27478757 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 74 0 0 chr15 58217396 58217423 -27478331 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 904 57 60 12 chr15 58217893 58218237 -27477517 + (CA)n Simple_repeat Simple_repeat 1 360 0 500 72 94 0 chr15 58218264 58218402 -27477352 + (CA)n Simple_repeat Simple_repeat 1 151 0 266 92 79 13 chr15 58218428 58218504 -27477250 + (CA)n Simple_repeat Simple_repeat 1 81 0 464 76 76 35 chr15 58218506 58218678 -27477076 + (CACAC)n Simple_repeat Simple_repeat 1 179 0 346 77 39 26 chr15 58218712 58218790 -27476964 + (CA)n Simple_repeat Simple_repeat 1 79 0 725 231 20 50 chr15 58219238 58219437 -27476317 - MIR SINE MIR -39 223 31 301 205 370 8 chr15 58219594 58219721 -27476033 - MER5B DNA MER1_type -4 174 2 609 203 174 0 chr15 58219750 58219888 -27475866 - MER5A DNA MER1_type -20 169 8 204 40 0 0 chr15 58219922 58219947 -27475807 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 375 266 53 0 chr15 58219954 58220048 -27475706 - L2 LINE L2 -5 3267 3169 1800 111 0 4 chr15 58220147 58220408 -27475346 + AluSx SINE Alu 51 310 -2 986 198 6 0 chr15 58220419 58220596 -27475158 + MER5B DNA MER1_type 1 178 0 288 264 171 0 chr15 58221183 58221294 -27474460 - MIR SINE MIR -68 140 26 425 18 0 18 chr15 58221584 58221639 -27474115 + (TG)n Simple_repeat Simple_repeat 2 55 0 517 296 97 38 chr15 58222187 58222684 -27473070 - L1ME LINE L1 -338 5783 5258 1731 135 26 32 chr15 58222724 58222987 -27472767 - L1MB3 LINE L1 0 6183 5921 3239 160 35 0 chr15 58222987 58223524 -27472230 + MER41D LTR ERV1 1 556 -1 1731 135 26 32 chr15 58223524 58223572 -27472182 - L1MB3 LINE L1 -262 5921 5874 296 342 42 28 chr15 58223731 58224453 -27471301 - L1ME LINE L1 -1112 5034 4303 1176 299 120 42 chr15 58224535 58225443 -27470311 - L1ME LINE L1 -2286 3860 2579 454 170 27 80 chr15 58225900 58226012 -27469742 + LTR33 LTR ERVL 1 106 -415 506 206 16 24 chr15 58226168 58226294 -27469460 + LTR33 LTR ERVL 397 521 0 265 320 203 7 chr15 58226294 58226447 -27469307 - MIR3 SINE MIR -24 184 2 1494 204 118 55 chr15 58227082 58227451 -27468303 - MSTB2 LTR MaLR 0 457 58 2069 132 0 0 chr15 58227451 58227755 -27467999 - AluSx SINE Alu -8 304 1 1494 204 118 55 chr15 58227755 58227802 -27467952 - MSTB2 LTR MaLR -399 58 15 1009 249 88 52 chr15 58227923 58228309 -27467445 - MLT1J2 LTR MaLR -31 419 20 209 274 0 0 chr15 58228316 58228367 -27467387 - MIR SINE MIR -147 115 65 213 300 67 11 chr15 58229192 58229282 -27466472 - MIR SINE MIR -86 176 82 215 355 65 43 chr15 58229321 58229507 -27466247 - MIR3 SINE MIR -3 205 16 330 275 33 50 chr15 58229860 58229980 -27465774 + MIR3 SINE MIR 8 125 -83 198 314 15 51 chr15 58230221 58230358 -27465396 + L2 LINE L2 2842 2973 -299 1212 254 151 15 chr15 58230600 58231057 -27464697 - LTR33 LTR ERVL 0 521 3 595 280 145 19 chr15 58231613 58231827 -27463927 + MLT1K LTR MaLR 10 250 -338 586 158 11 0 chr15 58231950 58232045 -27463709 - AluS SINE Alu -216 97 2 1327 279 77 35 chr15 58232430 58233207 -27462547 + HAL1 LINE L1 777 1586 -921 854 222 154 8 chr15 58233345 58233579 -27462175 + MLT1K LTR MaLR 321 588 0 333 0 0 0 chr15 58234878 58234915 -27460839 + (TG)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 58235405 58235429 -27460325 + AT_rich Low_complexity Low_complexity 1 24 0 1999 209 32 37 chr15 58235434 58235995 -27459759 - L1M4 LINE L1 -2031 4115 3558 3530 228 38 12 chr15 58235996 58237022 -27458732 + L1M4 LINE L1 4110 5162 -984 1800 273 32 13 chr15 58237007 58237542 -27458212 + L1MA7 LINE L1 5597 6145 -214 * 799 150 0 0 chr15 58237565 58237685 -27458069 - AluSg/x SINE Alu -8 304 185 1520 104 0 35 chr15 58237685 58237915 -27457839 - AluSq SINE Alu -91 222 1 577 221 22 0 chr15 58237915 58238051 -27457703 + L1MD2 LINE L1 6208 6346 -13 34 42 0 0 chr15 58238149 58238197 -27457557 + AT_rich Low_complexity Low_complexity 1 48 0 33 25 0 0 chr15 58238268 58238308 -27457446 + AT_rich Low_complexity Low_complexity 1 40 0 468 93 0 13 chr15 58238324 58238399 -27457355 - L1MA3 LINE L1 -1 6304 6231 1251 343 109 45 chr15 58238486 58239453 -27456301 - HAL1 LINE L1 -86 2421 1393 1279 244 105 46 chr15 58239885 58240344 -27455410 - MLT1J LTR MaLR -20 491 6 285 253 133 0 chr15 58240688 58240771 -27454983 + MER81 DNA DNA 1 94 -20 * 690 147 0 0 chr15 58240769 58240864 -27454890 + MER81 DNA DNA 16 110 -4 228 353 128 6 chr15 58240866 58241022 -27454732 + MIR SINE MIR 10 184 -78 337 180 0 0 chr15 58241134 58241195 -27454559 - Charlie1 DNA MER1_type -300 2461 2401 640 278 53 9 chr15 58241200 58241427 -27454327 + HAL1 LINE L1 1563 1799 -708 431 273 0 15 chr15 58241557 58241689 -27454065 + HAL1 LINE L1 2038 2167 -340 243 279 15 66 chr15 58241726 58241862 -27453892 + HAL1b LINE L1 746 874 -474 246 297 131 11 chr15 58241949 58242124 -27453630 + HAL1 LINE L1 2176 2371 -136 33 0 0 0 chr15 58242177 58242210 -27453544 + AT_rich Low_complexity Low_complexity 1 33 0 609 348 84 29 chr15 58243220 58243510 -27452244 + LTR67 LTR ERVL 3 276 -281 1603 164 93 31 chr15 58243510 58243678 -27452076 - THE1C LTR MaLR 0 375 219 204 40 0 0 chr15 58243678 58243703 -27452051 + (GA)n Simple_repeat Simple_repeat 1 25 0 1603 164 93 31 chr15 58243703 58243887 -27451867 - THE1C LTR MaLR -156 219 1 609 348 84 29 chr15 58243887 58244122 -27451632 + LTR67 LTR ERVL 276 557 0 2459 121 28 8 chr15 58245065 58245421 -27450333 - THE1B LTR MaLR 0 364 2 3029 82 25 28 chr15 58245422 58245859 -27449895 - THE1B-int LTR MaLR 0 1580 1145 995 206 5 37 chr15 58246496 58246710 -27449044 - MER63A DNA MER1_type 0 210 4 210 307 0 91 chr15 58247629 58247717 -27448037 - MIR SINE MIR -78 184 105 673 223 27 43 chr15 58247951 58248135 -27447619 + MER91A DNA MER1_type 1 181 -15 233 318 155 0 chr15 58248250 58248379 -27447375 + MIR3 SINE MIR 46 194 -14 588 326 58 5 chr15 58249008 58249232 -27446522 + MIR SINE MIR 26 261 -1 405 294 43 54 chr15 58249737 58249921 -27445833 - MIR SINE MIR -41 221 40 336 269 115 0 chr15 58250241 58250345 -27445409 + L2 LINE L2 3171 3286 -27 273 220 66 88 chr15 58250463 58250554 -27445200 + L2 LINE L2 3225 3313 0 740 283 53 63 chr15 58251112 58251508 -27444246 + L2 LINE L2 2921 3312 -1 650 319 54 0 chr15 58251946 58252131 -27443623 - MER91A DNA MER1_type -1 195 1 469 345 90 27 chr15 58252313 58252646 -27443108 - L2 LINE L2 -25 3247 2894 335 310 101 52 chr15 58252685 58252953 -27442801 + L2 LINE L2 2990 3270 -2 804 241 178 30 chr15 58253299 58253664 -27442090 - MLT1L LTR MaLR -75 540 122 248 241 19 0 chr15 58254341 58254395 -27441359 + L2 LINE L2 2282 2336 -978 600 203 89 98 chr15 58254416 58254727 -27441027 - MLT1H LTR MaLR -227 322 16 841 248 120 12 chr15 58254893 58255135 -27440619 - LTR16C LTR ERVL 0 491 224 568 237 94 72 chr15 58255499 58255967 -27439787 + MLT1H LTR MaLR 39 590 0 302 358 14 23 chr15 58257213 58257428 -27438326 - L1ME3A LINE L1 -275 5895 5683 737 347 76 14 chr15 58259181 58259613 -27436141 + ERVL LTR ERVL 4274 4732 -1032 1181 248 135 26 chr15 58259905 58260284 -27435470 - LTR16C LTR ERVL -2 489 70 558 224 72 0 chr15 58260762 58260887 -27434867 - LTR16C LTR ERVL 0 491 358 863 283 25 25 chr15 58261201 58261438 -27434316 - LTR16C LTR ERVL -150 341 105 304 359 17 34 chr15 58261545 58261782 -27433972 + ERVL LTR ERVL 5043 5275 -489 3457 125 62 5 chr15 58261791 58262352 -27433402 + LTR49 LTR ERV1 3 595 0 301 56 74 0 chr15 58262833 58262887 -27432867 + T-rich Low_complexity Low_complexity 4 61 0 335 304 22 30 chr15 58263098 58263233 -27432521 + LTR16C LTR ERVL 305 438 -53 1930 206 76 7 chr15 58263533 58263965 -27431789 + LTR40b LTR ERVL 1 462 0 444 290 24 16 chr15 58264055 58264179 -27431575 - L2 LINE L2 -3 3310 3186 421 382 48 5 chr15 58264362 58264569 -27431185 + MIR SINE MIR 30 245 -17 1689 76 0 14 chr15 58264932 58265155 -27430599 + AluY SINE Alu 1 220 -91 3655 162 45 20 chr15 58265229 58265919 -27429835 + MER67C LTR ERV1 4 710 0 292 151 68 82 chr15 58266282 58266355 -27429399 + MER91C DNA MER1_type 38 109 -31 278 343 56 19 chr15 58266577 58266685 -27429069 + MIR SINE MIR 61 172 -90 189 319 121 9 chr15 58266722 58266838 -27428916 + L2 LINE L2 3021 3149 -164 252 175 25 42 chr15 58266838 58266958 -27428796 + CT-rich Low_complexity Low_complexity 3 120 0 193 182 0 0 chr15 58266965 58266998 -27428756 + L2 LINE L2 3182 3214 -99 1213 83 6 44 chr15 58268265 58268446 -27427308 - AluSq SINE Alu -19 294 121 6573 108 22 0 chr15 58268555 58269450 -27426304 - THE1B-int LTR MaLR -665 915 1 2267 113 26 71 chr15 58269450 58269831 -27425923 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr15 58269966 58269989 -27425765 + (TG)n Simple_repeat Simple_repeat 1 23 0 611 301 61 75 chr15 58270303 58270665 -27425089 + MLT1K LTR MaLR 9 365 -223 849 303 66 8 chr15 58270680 58270924 -27424830 - MIR SINE MIR -1 261 4 459 254 169 11 chr15 58271010 58271187 -27424567 + MLT1K LTR MaLR 384 588 0 762 202 11 28 chr15 58271228 58271406 -27424348 + MER3 DNA MER1_type 35 209 0 315 211 0 0 chr15 58271450 58271507 -27424247 - MLT1A1 LTR MaLR 0 374 318 6553 107 25 21 chr15 58271507 58272619 -27423135 - L1MA4A LINE L1 -4 6299 5171 1455 181 27 20 chr15 58272619 58272911 -27422843 - MLT1A1 LTR MaLR -42 323 30 2119 129 35 30 chr15 58272928 58273301 -27422453 - THE1C LTR MaLR 0 375 1 10498 115 29 22 chr15 58273301 58274871 -27420883 - THE1C-int LTR MaLR 0 1580 1 1223 127 35 10 chr15 58274871 58275086 -27420668 - THE1C LTR MaLR 0 375 137 407 313 108 19 chr15 58275102 58275316 -27420438 + L1MC4a LINE L1 3242 3474 -2672 1207 126 14 0 chr15 58275472 58275679 -27420075 + L1MA6 LINE L1 6091 6300 0 442 338 56 14 chr15 58275705 58275992 -27419762 + L1MC4a LINE L1 3545 3844 -2302 269 213 0 74 chr15 58276046 58276168 -27419586 + A-rich Low_complexity Low_complexity 4 116 0 382 253 46 0 chr15 58276286 58276373 -27419381 + L1MC4 LINE L1 6613 6703 -1339 817 161 52 26 chr15 58276374 58276529 -27419225 - FRAM SINE Alu -18 158 1 471 251 93 122 chr15 58276530 58276695 -27419059 + L1MC4a LINE L1 3999 4154 -1992 2176 149 75 7 chr15 58276695 58277111 -27418643 + L1MB1 LINE L1 5721 6164 -4 471 251 93 122 chr15 58277111 58277224 -27418530 + L1MC4a LINE L1 4154 4269 -1877 1646 162 0 32 chr15 58277235 58277519 -27418235 + AluSx SINE Alu 1 275 -37 252 0 0 0 chr15 58277523 58277551 -27418203 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 829 308 117 5 chr15 58277645 58278080 -27417674 + L1MC4a LINE L1 5374 5857 -1951 1840 182 25 25 chr15 58278080 58278438 -27417316 - MLT1A1 LTR MaLR 0 365 8 268 228 11 87 chr15 58278768 58278860 -27416894 - L2 LINE L2 -38 3275 3191 325 252 35 5 chr15 58278875 58278988 -27416766 + MER5A DNA MER1_type 9 182 -7 203 322 0 0 chr15 58279268 58279327 -27416427 + L2 LINE L2 2613 2671 -643 273 258 191 0 chr15 58280110 58280199 -27415555 - MIR SINE MIR -65 143 38 608 262 89 0 chr15 58280231 58280433 -27415321 - L1ME3 LINE L1 -3 6159 5940 284 273 152 10 chr15 58280527 58280626 -27415128 - MIR SINE MIR 0 262 150 211 235 20 0 chr15 58280637 58280688 -27415066 + CT-rich Low_complexity Low_complexity 2 53 0 1557 184 105 173 chr15 58280697 58281344 -27414410 - MLT2F LTR ERVL -57 606 4 306 197 94 77 chr15 58281349 58281466 -27414288 - MIR SINE MIR -123 139 21 354 289 9 9 chr15 58281588 58281702 -27414052 + MIR SINE MIR 79 192 -70 200 298 21 0 chr15 58282713 58282760 -27412994 - L2 LINE L2 -25 3247 3200 543 265 143 5 chr15 58282777 58283000 -27412754 - MER112 DNA MER1_type -6 254 1 272 310 96 43 chr15 58283061 58283248 -27412506 + MIR SINE MIR 47 243 -19 198 376 47 24 chr15 58283288 58283543 -27412211 - L2 LINE L2 -175 3097 2837 1305 201 98 49 chr15 58283632 58283980 -27411774 + MLT1A1 LTR MaLR 1 365 0 330 130 0 72 chr15 58284064 58284133 -27411621 - L1PA10 LINE L1 0 6168 6105 221 285 51 82 chr15 58284250 58284408 -27411346 + L3 LINE CR1 1407 1559 -18 292 337 51 28 chr15 58284761 58284939 -27410815 + MIR SINE MIR 20 201 -61 2521 240 31 7 chr15 58285658 58286237 -27409517 + MLT1E LTR MaLR 1 593 0 592 269 142 20 chr15 58286530 58286883 -27408871 - L1MC4a LINE L1 -1880 5928 5533 846 176 13 13 chr15 58287210 58287448 -27408306 + CT-rich Low_complexity Low_complexity 1 238 0 224 71 0 0 chr15 58287449 58287477 -27408277 + (TC)n Simple_repeat Simple_repeat 1 28 0 190 224 0 153 chr15 58287828 58287913 -27407841 + MIR SINE MIR 121 192 -70 223 423 20 12 chr15 58288015 58288263 -27407491 + L2 LINE L2 2412 2661 -653 887 260 129 54 chr15 58288419 58288595 -27407159 + MLT1L LTR MaLR 111 273 -238 767 183 0 29 chr15 58288595 58288732 -27407022 - FLAM_A SINE Alu 0 133 1 887 260 129 54 chr15 58288732 58289013 -27406741 + MLT1L LTR MaLR 273 502 -9 1212 159 155 16 chr15 58289288 58289584 -27406170 - MSTA LTR MaLR -3 425 3 206 316 34 17 chr15 58289689 58289806 -27405948 - L2 LINE L2 -650 2664 2546 1814 185 10 61 chr15 58290866 58291260 -27404494 - MLT1A2 LTR MaLR 0 374 1 525 250 250 8 chr15 58291336 58291580 -27404174 - L2 LINE L2 0 3313 3011 753 285 191 23 chr15 58291580 58291977 -27403777 + LTR16B LTR ERVL 1 464 0 367 302 0 17 chr15 58291977 58292093 -27403661 - L2 LINE L2 -298 3015 2902 675 171 9 0 chr15 58292106 58292217 -27403537 - LTR40b LTR ERVL -26 436 325 707 221 38 6 chr15 58292219 58292377 -27403377 - MLT1H LTR MaLR -386 163 1 1237 183 0 35 chr15 58292486 58292743 -27403011 - AluJb SINE Alu -11 301 54 288 310 86 17 chr15 58293198 58293372 -27402382 + MIR3 SINE MIR 10 195 -13 235 277 84 12 chr15 58293757 58293840 -27401914 + MIR SINE MIR 104 192 -70 414 273 118 12 chr15 58293902 58294063 -27401691 + MIR SINE MIR 84 261 -1 22 35 0 0 chr15 58294429 58294458 -27401296 + AT_rich Low_complexity Low_complexity 1 29 0 312 236 108 45 chr15 58294480 58294637 -27401117 + HAL1 LINE L1 2252 2418 -89 22 70 0 0 chr15 58294722 58294765 -27400989 + AT_rich Low_complexity Low_complexity 1 43 0 606 184 0 0 chr15 58295579 58295677 -27400077 + MIR SINE MIR 50 147 -115 514 250 83 30 chr15 58297842 58298010 -27397744 + MIR SINE MIR 29 205 -57 698 236 68 36 chr15 58298011 58298231 -27397523 + MIR SINE MIR 20 246 -16 649 278 7 0 chr15 58298298 58298442 -27397312 - MIR SINE MIR 0 262 118 200 374 41 20 chr15 58298702 58298849 -27396905 - L2 LINE L2 -282 2990 2841 387 218 224 14 chr15 58298889 58299036 -27396718 + MER5B DNA MER1_type 1 178 0 567 221 81 13 chr15 58299096 58299245 -27396509 - MER3 DNA MER1_type -43 166 8 233 341 73 55 chr15 58299253 58299596 -27396158 - L2 LINE L2 -525 2789 2441 936 204 18 53 chr15 58299620 58299846 -27395908 + MER20 DNA MER1_type 1 218 -1 212 284 30 0 chr15 58299947 58300014 -27395740 - L2 LINE L2 -1003 2311 2243 1501 212 111 21 chr15 58300559 58300983 -27394771 + MLT1C LTR MaLR 6 467 0 389 250 245 27 chr15 58301290 58301474 -27394280 - MIR SINE MIR -1 261 38 523 176 39 20 chr15 58301865 58301967 -27393787 + MER5A DNA MER1_type 9 112 -77 204 300 75 50 chr15 58301893 58302013 -27393741 - MER5A DNA MER1_type -23 166 44 * 262 193 70 0 chr15 58303014 58303071 -27392683 + MIR SINE MIR 106 166 -96 595 204 120 93 chr15 58303715 58303804 -27391950 + MER69 DNA AcHobo 1 86 -2440 1668 133 7 7 chr15 58303804 58304074 -27391680 - AluSx SINE Alu -6 306 37 595 204 120 93 chr15 58304074 58304209 -27391545 + MER69 DNA AcHobo 86 231 -2295 641 238 84 35 chr15 58304218 58304445 -27391309 - MER69 DNA AcHobo -757 469 232 3098 192 109 28 chr15 58304560 58305419 -27390335 + MER69 DNA AcHobo 1451 2395 -131 2093 107 3 7 chr15 58305419 58305717 -27390037 + AluSx SINE Alu 1 297 -15 3098 192 109 28 chr15 58305717 58305804 -27389950 + MER69 DNA AcHobo 2395 2474 -52 187 188 78 31 chr15 58305922 58305986 -27389768 + L2 LINE L2 3025 3091 -181 948 96 5 43 chr15 58306282 58306408 -27389346 + (TTTC)n Simple_repeat Simple_repeat 1 301 0 948 96 5 43 chr15 58306408 58306595 -27389159 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1643 178 3 16 chr15 58306666 58306969 -27388785 - AluJo SINE Alu 0 312 14 295 269 20 81 chr15 58307512 58307661 -27388093 + MIR SINE MIR 112 251 -11 235 266 32 64 chr15 58308178 58308272 -27387482 + MIR3 SINE MIR 98 188 -20 496 191 88 29 chr15 58308525 58308661 -27387093 + MIR3 SINE MIR 61 204 -4 640 191 12 0 chr15 58309115 58309283 -27386471 + CT-rich Low_complexity Low_complexity 1 170 0 1672 175 3 29 chr15 58309290 58309605 -27386149 - AluJb SINE Alu -5 307 1 581 315 43 5 chr15 58309840 58310024 -27385730 - MIR SINE MIR -18 244 54 240 194 56 56 chr15 58310915 58310987 -27384767 - L2 LINE L2 0 3313 3242 234 298 48 12 chr15 58310991 58311075 -27384679 + L2 LINE L2 3227 3313 0 290 343 28 21 chr15 58311078 58311221 -27384533 - L3 LINE CR1 -631 946 803 733 268 96 13 chr15 58311232 58311699 -27384055 + LTR33 LTR ERVL 2 519 -2 417 325 97 30 chr15 58311738 58311790 -27383964 - MIR SINE MIR -8 254 207 1868 118 46 26 chr15 58311790 58312095 -27383659 - AluSx SINE Alu -1 311 1 1306 193 61 54 chr15 58312096 58312392 -27383362 - AluJb SINE Alu -4 298 1 417 325 97 30 chr15 58312392 58312574 -27383180 - MIR SINE MIR -54 208 2 353 338 134 14 chr15 58312584 58312923 -27382831 - L3 LINE CR1 -831 746 336 785 215 7 0 chr15 58314575 58314719 -27381035 - MER58B DNA MER1_type -2 339 195 210 0 71 48 chr15 58315114 58315156 -27380598 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1030 129 19 0 chr15 58315159 58315314 -27380440 - AluSq SINE Alu -24 289 132 328 282 32 75 chr15 58316607 58316795 -27378959 - MER5A DNA MER1_type -2 187 8 517 279 13 38 chr15 58316612 58316770 -27378984 + MER5B DNA MER1_type 7 160 -18 614 279 32 70 chr15 58316844 58317156 -27378598 - MLT1I LTR MaLR -10 399 100 950 167 0 0 chr15 58317775 58317937 -27377817 + FRAM SINE Alu 1 162 -14 213 214 0 0 chr15 58318015 58318057 -27377697 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 303 314 81 32 chr15 58318169 58318541 -27377213 - L1M4 LINE L1 -1894 4252 3863 272 132 0 94 chr15 58318856 58318909 -27376845 - MER94 DNA DNA -85 49 2 334 306 12 25 chr15 58319296 58319456 -27376298 + GA-rich Low_complexity Low_complexity 2 159 0 1090 45 0 0 chr15 58319998 58320131 -27375623 + L1PA4 LINE L1 6020 6152 -3 313 271 0 0 chr15 58320135 58320231 -27375523 + A-rich Low_complexity Low_complexity 1 96 0 1961 192 32 48 chr15 58320416 58320891 -27374863 - MLT1C LTR MaLR 0 467 1 318 258 17 50 chr15 58321521 58321641 -27374113 - MER102b DNA MER1_type 0 341 226 289 264 0 69 chr15 58322041 58322128 -27373626 + MIR SINE MIR 47 127 -135 1520 243 92 44 chr15 58322130 58322649 -27373105 - MLT1H1 LTR MaLR 0 555 12 3799 105 12 5 chr15 58322660 58323233 -27372521 - L1MA2 LINE L1 0 6304 5728 1165 66 18 0 chr15 58323329 58323496 -27372258 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 1022 122 0 30 chr15 58323496 58323660 -27372094 - AluSp SINE Alu -32 281 123 22 0 0 0 chr15 58323701 58323723 -27372031 + AT_rich Low_complexity Low_complexity 1 22 0 1023 68 15 0 chr15 58323723 58323855 -27371899 - AluSp SINE Alu -179 134 1 393 243 35 21 chr15 58323881 58324025 -27371729 - L1ME LINE L1 -374 5747 5602 207 0 0 0 chr15 58324811 58324834 -27370920 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 456 281 36 52 chr15 58324901 58325093 -27370661 + MIR3 SINE MIR 17 205 -3 1994 173 11 34 chr15 58325233 58325586 -27370168 - MLT1A1 LTR MaLR -18 347 3 694 240 184 4 chr15 58325611 58325844 -27369910 - LTR16C LTR ERVL 0 491 217 867 124 0 0 chr15 58326574 58326695 -27369059 + FRAM SINE Alu 25 145 -31 601 283 14 0 chr15 58327767 58327912 -27367842 - L2 LINE L2 0 3313 3167 180 379 164 11 chr15 58328288 58328465 -27367289 + L2 LINE L2 3066 3269 -3 250 288 134 32 chr15 58329543 58329671 -27366083 + MIR SINE MIR 19 158 -55 21 36 0 0 chr15 58330520 58330548 -27365206 + AT_rich Low_complexity Low_complexity 1 28 0 200 320 95 7 chr15 58330758 58330905 -27364849 + L2 LINE L2 2830 2989 -283 183 282 39 13 chr15 58330962 58331040 -27364714 + L2 LINE L2 3193 3272 0 219 258 135 11 chr15 58331575 58331664 -27364090 + MIR3 SINE MIR 85 184 -24 446 340 59 15 chr15 58332192 58332395 -27363359 - MIR SINE MIR -48 214 3 * 493 303 24 6 chr15 58332395 58332532 -27363222 - MIR SINE MIR -76 186 47 571 315 28 11 chr15 58332540 58332721 -27363033 - MIR SINE MIR -49 213 30 43 35 0 0 chr15 58333212 58333269 -27362485 + AT_rich Low_complexity Low_complexity 1 57 0 366 252 143 8 chr15 58334475 58334594 -27361160 + MER5B DNA MER1_type 1 135 -43 527 174 92 28 chr15 58334682 58334791 -27360963 - MER5B DNA MER1_type -53 125 10 183 308 8 92 chr15 58334855 58334975 -27360779 + MIR3 SINE MIR 76 185 -23 728 231 26 88 chr15 58335500 58335773 -27359981 - MIR SINE MIR -4 258 3 222 333 170 7 chr15 58335879 58336026 -27359728 - MIR SINE MIR -80 182 12 355 247 11 32 chr15 58336056 58336149 -27359605 + L2 LINE L2 3217 3307 -6 248 247 0 67 chr15 58337182 58337271 -27358483 - MIR SINE MIR -119 143 61 * 307 382 54 35 chr15 58337268 58337527 -27358227 + L2 LINE L2 3009 3272 0 541 307 86 16 chr15 58337848 58338092 -27357662 - MIR SINE MIR 0 262 2 260 286 14 14 chr15 58338183 58338253 -27357501 - MIR SINE MIR -173 89 20 600 213 87 0 chr15 58338603 58338730 -27357024 + MER45A DNA AcHobo 40 177 -1 347 189 3 0 chr15 58339163 58339231 -27356523 - FLAM_A SINE Alu -3 130 70 423 249 124 45 chr15 58339420 58339597 -27356157 + L1ME LINE L1 4890 5080 -1066 1754 166 0 19 chr15 58339603 58339911 -27355843 - AluJo SINE Alu -10 302 1 895 213 6 0 chr15 58340057 58340226 -27355528 + MER3 DNA MER1_type 40 209 0 517 309 146 21 chr15 58340286 58340717 -27355037 + L1ME LINE L1 5276 5760 -361 654 226 71 24 chr15 58340802 58341014 -27354740 - L1ME LINE L1 -332 5789 5568 2022 245 107 9 chr15 58341056 58341587 -27354167 - MLT1G1 LTR MaLR -12 583 1 231 188 0 0 chr15 58342745 58342793 -27352961 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 274 342 75 0 chr15 58342808 58342928 -27352826 - L2 LINE L2 -3 3269 3141 206 289 62 21 chr15 58348369 58348466 -27347288 - L2 LINE L2 -30 3242 3142 4862 122 35 71 chr15 58348925 58349064 -27346690 - L1MA9 LINE L1 -7 6161 6019 2173 103 0 0 chr15 58349064 58349354 -27346400 - AluSx SINE Alu -22 290 1 955 117 0 0 chr15 58349356 58349484 -27346270 - AluJo/FLAM SINE Alu -174 128 1 4862 122 35 71 chr15 58349484 58350288 -27345466 - L1MA9 LINE L1 -150 6018 5268 232 333 63 0 chr15 58350838 58350901 -27344853 - L3 LINE CR1 -1200 377 311 579 282 0 0 chr15 58351048 58351197 -27344557 + MIR SINE MIR 113 261 -1 222 344 69 32 chr15 58351265 58351454 -27344300 - L2 LINE L2 -5 3308 3113 180 0 0 0 chr15 58351530 58351550 -27344204 + (T)n Simple_repeat Simple_repeat 1 20 0 289 281 216 22 chr15 58351799 58351938 -27343816 + L2 LINE L2 2587 2752 -562 730 331 75 17 chr15 58351949 58352308 -27343446 + ERVL LTR ERVL 4779 5158 -606 1214 121 15 47 chr15 58353731 58353953 -27341801 + MER20 DNA MER1_type 2 219 0 2597 195 41 7 chr15 58354110 58354753 -27341001 - L1M2c LINE L1 -4516 2203 1622 1027 221 57 53 chr15 58354753 58355034 -27340720 + MLT1A1 LTR MaLR 1 282 -83 894 107 0 8 chr15 58355043 58355174 -27340580 - AluSq/x SINE Alu -172 141 12 348 306 106 22 chr15 58355193 58355373 -27340381 + L1ME LINE L1 3583 3777 -2369 351 339 91 31 chr15 58356182 58356436 -27339318 + L1ME LINE L1 4060 4328 -1818 1628 269 111 14 chr15 58356607 58357139 -27338615 + MLT1G1 LTR MaLR 1 538 -11 459 250 75 28 chr15 58357180 58357392 -27338362 + L1ME LINE L1 5568 5789 -332 488 245 0 0 chr15 58358053 58358151 -27337603 - MIR SINE MIR -115 147 50 237 303 19 43 chr15 58359493 58359655 -27336099 + GA-rich Low_complexity Low_complexity 2 159 0 838 135 0 0 chr15 58360197 58360330 -27335424 + L1PA4 LINE L1 6020 6152 -3 227 289 41 0 chr15 58360334 58360431 -27335323 + A-rich Low_complexity Low_complexity 6 106 0 349 77 292 0 chr15 58360625 58360690 -27335064 + THE1C LTR MaLR 289 372 -3 645 255 95 61 chr15 58361095 58361247 -27334507 - MLT1L LTR MaLR -165 450 305 706 187 0 43 chr15 58361247 58361386 -27334368 + FLAM_A SINE Alu 1 133 0 645 255 95 61 chr15 58361386 58361559 -27334195 - MLT1L LTR MaLR -310 305 114 2899 225 54 32 chr15 58361862 58362983 -27332771 + L1ME1 LINE L1 4903 6206 -128 1005 164 5 45 chr15 58362983 58363184 -27332570 + L1PA8A LINE L1 5939 6131 0 2899 225 54 32 chr15 58363184 58363314 -27332440 + L1ME1 LINE L1 6206 6332 -2 235 304 52 17 chr15 58363440 58363555 -27332199 + LTR16A1 LTR ERVL 7 125 -332 845 244 29 55 chr15 58363898 58364172 -27331582 + MLT1A1 LTR MaLR 16 282 -83 825 119 0 8 chr15 58364186 58364312 -27331442 - AluSq/x SINE Alu -176 136 12 430 302 68 37 chr15 58364331 58364573 -27331181 + L1 LINE L1 3583 3845 -2301 332 304 89 36 chr15 58364574 58364742 -27331012 + L1 LINE L1 3907 4083 -2063 551 294 84 65 chr15 58364777 58364872 -27330882 + L1 LINE L1 4274 4366 -1780 2551 139 11 28 chr15 58364872 58365305 -27330449 - MSTB LTR MaLR 0 426 1 551 294 84 65 chr15 58365305 58365686 -27330068 + L1 LINE L1 4366 4759 -1387 381 318 29 38 chr15 58365709 58366024 -27329730 + L1 LINE L1 4735 5046 -1100 2219 88 0 31 chr15 58366413 58366730 -27329024 + AluY SINE Alu 1 307 -4 225 298 43 0 chr15 58366919 58367013 -27328741 + L1M4 LINE L1 4485 4582 -1564 1030 189 11 0 chr15 58367165 58367350 -27328404 - MER5A DNA MER1_type 0 189 3 390 42 0 0 chr15 58367566 58367614 -27328140 + (TG)n Simple_repeat Simple_repeat 1 48 0 405 311 102 61 chr15 58367700 58368063 -27327691 + L1M4 LINE L1 4584 4961 -1185 369 311 71 2 chr15 58368237 58368388 -27327366 - MIR SINE MIR -58 150 25 2634 102 8 11 chr15 58368745 58369119 -27326635 + THE1C LTR MaLR 3 375 0 526 274 86 18 chr15 58369189 58369416 -27326338 + MIR SINE MIR 18 256 -6 308 266 12 46 chr15 58369776 58369873 -27325881 - MIR SINE MIR -65 143 55 212 337 89 10 chr15 58373163 58373365 -27322389 - MIR SINE MIR -25 237 20 349 258 183 0 chr15 58375398 58375491 -27320263 - MER81 DNA DNA 0 114 5 2183 133 0 0 chr15 58375648 58375942 -27319812 - AluSx SINE Alu -18 294 1 256 208 0 0 chr15 58376580 58376633 -27319121 - L2 LINE L2 -1036 2278 2226 221 232 87 0 chr15 58377216 58377285 -27318469 + MIR3 SINE MIR 134 208 0 1932 126 3 7 chr15 58377646 58377931 -27317823 + AluSq SINE Alu 23 306 -7 423 0 0 0 chr15 58378280 58378327 -27317427 + (CA)n Simple_repeat Simple_repeat 2 48 0 330 242 40 10 chr15 58378744 58378843 -27316911 + L2 LINE L2 3169 3270 -2 249 255 49 10 chr15 58380585 58380613 -27315141 - HAL1b LINE L1 0 1348 1321 404 224 90 37 chr15 58380613 58380747 -27315007 - L1ME4a LINE L1 -46 6075 1243 515 227 55 8 chr15 58380828 58380956 -27314798 + MIR SINE MIR 4 137 -125 300 255 53 0 chr15 58380956 58381050 -27314704 - L1P4 LINE L1 -689 5472 5374 266 340 157 14 chr15 58381219 58381772 -27313982 + L2 LINE L2 1757 2388 -926 249 208 0 0 chr15 58382066 58382114 -27313640 - MIR3 SINE MIR -12 196 149 378 143 0 0 chr15 58382639 58382695 -27313059 - Charlie1 DNA MER1_type -9 2752 2697 2094 129 0 25 chr15 58382811 58383128 -27312626 - AluJb SINE Alu -3 309 1 1808 44 0 18 chr15 58383412 58383639 -27312115 + AluY SINE Alu 1 223 -88 699 251 6 6 chr15 58383739 58383914 -27311840 - L1P4 LINE L1 -2510 3636 3462 1432 155 7 30 chr15 58383922 58384135 -27311619 + L1P LINE L1 4826 5033 -1113 2407 105 17 17 chr15 58384135 58384496 -27311258 - THE1B LTR MaLR -3 361 1 1432 155 7 30 chr15 58384496 58384553 -27311201 + L1P LINE L1 5033 5090 -1056 405 286 8 8 chr15 58386318 58386437 -27309317 + (TGG)n Simple_repeat Simple_repeat 2 120 0 1301 134 48 0 chr15 58387140 58387349 -27308405 - MER20 DNA MER1_type 0 219 1 341 303 0 0 chr15 58387572 58387671 -27308083 - L2 LINE L2 0 3313 3215 227 366 15 15 chr15 58387700 58387831 -27307923 + MIR SINE MIR 15 145 -117 237 169 62 29 chr15 58388945 58389252 -27306502 + (CCCA)n Simple_repeat Simple_repeat 1 317 0 370 174 0 97 chr15 58389275 58389470 -27306284 + C-rich Low_complexity Low_complexity 3 178 0 350 164 61 36 chr15 58389409 58389574 -27306180 + (CCCA)n Simple_repeat Simple_repeat 1 169 0 * 321 189 33 39 chr15 58389637 58389817 -27305937 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 343 263 35 12 chr15 58389720 58389891 -27305863 + (CCCA)n Simple_repeat Simple_repeat 3 177 0 2738 99 3 3 chr15 58390519 58390883 -27304871 + THE1B LTR MaLR 1 364 0 1089 279 55 36 chr15 58390910 58391294 -27304460 - MER21B LTR ERV1 -427 436 46 229 265 24 60 chr15 58391942 58392025 -27303729 + L2 LINE L2 3227 3306 -7 365 207 190 0 chr15 58392045 58392166 -27303588 + L1ME4a LINE L1 5967 6110 -11 2485 143 8 3 chr15 58392663 58393055 -27302699 - L1MC1 LINE L1 -96 6237 5844 696 164 66 0 chr15 58393056 58393178 -27302576 - FRAM SINE Alu -7 169 40 1759 209 60 14 chr15 58393181 58393550 -27302204 - MLT2B1 LTR ERVL -103 417 32 2319 95 7 3 chr15 58394567 58394873 -27300881 - AluSq SINE Alu -6 307 1 413 282 49 7 chr15 58394885 58395027 -27300727 - MIR SINE MIR -56 206 59 225 0 0 0 chr15 58395189 58395214 -27300540 + (T)n Simple_repeat Simple_repeat 1 25 0 2388 110 0 0 chr15 58395608 58395918 -27299836 - AluSq SINE Alu -2 311 2 472 223 9 0 chr15 58395919 58396031 -27299723 - MLT2B2 LTR ERVL -401 114 2 420 202 124 0 chr15 58396033 58396122 -27299632 + MER81 DNA DNA 10 109 -5 1095 196 67 5 chr15 58396882 58397097 -27298657 - LTR39 LTR ERV1 0 783 555 1923 128 20 15 chr15 58397097 58397535 -27298219 - MER61D LTR ERV1 0 501 3 3728 173 40 11 chr15 58397535 58398277 -27297477 + LTR1B LTR ERV1 1 783 -2 1745 163 0 24 chr15 58398285 58398509 -27297245 - LTR39 LTR ERV1 -226 557 340 2338 137 75 16 chr15 58398509 58398948 -27296806 - MER4C LTR ERV1 0 465 1 1745 163 0 24 chr15 58398948 58399012 -27296742 - LTR39 LTR ERV1 -443 340 276 346 252 17 17 chr15 58399160 58399275 -27296479 + LTR67 LTR ERVL 443 557 0 464 296 13 31 chr15 58399442 58399642 -27296112 + MIR3 SINE MIR 4 200 -8 2471 84 0 0 chr15 58399958 58400256 -27295498 + AluSx SINE Alu 1 298 -14 373 296 92 13 chr15 58400584 58400736 -27295018 - MIR SINE MIR -70 192 29 238 285 16 65 chr15 58401063 58401186 -27294568 + L2 LINE L2 2943 3059 -213 920 279 5 9 chr15 58401854 58402073 -27293681 - Charlie1a DNA MER1_type -1237 218 1 877 251 75 52 chr15 58402073 58402500 -27293254 - L1MC5 LINE L1 -186 7775 7333 995 171 37 28 chr15 58402500 58402716 -27293038 - MER20 DNA MER1_type -1 218 1 877 251 75 52 chr15 58402716 58402791 -27292963 - L1MC5 LINE L1 -628 7333 7261 846 206 39 39 chr15 58402913 58403146 -27292608 - L1MC5 LINE L1 -733 7228 6996 323 168 0 7 chr15 58403169 58403235 -27292519 - L1MC4 LINE L1 0 8042 7921 419 219 0 0 chr15 58403237 58403319 -27292435 - L1MC4 LINE L1 -149 7893 7812 373 262 118 54 chr15 58403579 58403800 -27291954 - L1MC4a LINE L1 -1586 6222 5988 293 214 0 97 chr15 58403818 58403921 -27291833 - L1MC4a LINE L1 -1906 5902 5810 2157 215 42 35 chr15 58403922 58404403 -27291351 - L1MB7 LINE L1 -9 6175 5688 1835 170 14 10 chr15 58404403 58404697 -27291057 - AluJo SINE Alu -17 295 1 2157 215 42 35 chr15 58404697 58404764 -27290990 - L1MB7 LINE L1 -496 5688 5623 921 260 48 26 chr15 58404819 58405131 -27290623 - L1MC4a LINE L1 -2081 5727 5409 196 299 58 36 chr15 58405244 58405381 -27290373 - L2 LINE L2 -70 3243 3104 2155 154 121 35 chr15 58405948 58406377 -27289377 + MLT1D LTR MaLR 14 485 -20 2198 111 138 5 chr15 58406377 58406755 -27288999 - MSTA LTR MaLR 0 428 1 2155 154 121 35 chr15 58406755 58406778 -27288976 + MLT1D LTR MaLR 485 505 0 413 264 64 14 chr15 58406779 58406919 -27288835 + MIR SINE MIR 116 262 0 339 310 27 30 chr15 58407088 58407285 -27288469 - L1MB7 LINE L1 -727 5429 5256 257 313 49 14 chr15 58407766 58407910 -27287844 - L1MB7 LINE L1 -1513 4633 4485 2259 245 101 44 chr15 58407939 58408392 -27287362 + MER21B LTR ERV1 1 514 -349 2705 110 0 3 chr15 58408392 58408757 -27286997 - THE1B LTR MaLR 0 364 1 2259 245 101 44 chr15 58408757 58409047 -27286707 + MER21B LTR ERV1 514 786 -77 3183 132 28 81 chr15 58409133 58409779 -27285975 + LTR9 LTR ERV1 1 612 0 284 294 52 65 chr15 58410850 58411003 -27284751 + MER5A DNA MER1_type 38 188 -1 974 165 74 0 chr15 58411014 58411190 -27284564 + MER5A DNA MER1_type 1 189 0 208 233 47 0 chr15 58411308 58411351 -27284403 - MER5B DNA MER1_type -74 104 60 1740 165 20 74 chr15 58411389 58411782 -27283972 - L1MC1 LINE L1 -1 6332 5961 893 195 65 51 chr15 58411836 58412051 -27283703 + MER20 DNA MER1_type 1 218 -1 246 238 38 0 chr15 58412324 58412404 -27283350 + (CA)n Simple_repeat Simple_repeat 1 83 0 480 330 28 9 chr15 58412911 58413126 -27282628 + MIR SINE MIR 20 238 -24 230 356 0 0 chr15 58413228 58413315 -27282439 - L1ME LINE L1 -467 5654 5568 1126 181 63 5 chr15 58413689 58413894 -27281860 - MER58A DNA MER1_type -6 218 2 347 165 38 135 chr15 58414327 58414460 -27281294 + L1ME4a LINE L1 5712 5831 -290 339 249 144 50 chr15 58414464 58414805 -27280949 + L1MC4a LINE L1 4673 5045 -1101 721 246 61 58 chr15 58415008 58415350 -27280404 + L1MC4a LINE L1 5572 5914 -1894 812 254 0 0 chr15 58415602 58415799 -27279955 + L2 LINE L2 2288 2484 -830 734 312 102 14 chr15 58415776 58416215 -27279539 + L2 LINE L2 2836 3313 0 * 328 277 46 15 chr15 58416894 58417024 -27278730 + L1ME4a LINE L1 5977 6110 -11 26 0 0 0 chr15 58417405 58417431 -27278323 + AT_rich Low_complexity Low_complexity 1 26 0 300 299 19 19 chr15 58417499 58417606 -27278148 + MER81 DNA DNA 4 110 -4 531 237 46 20 chr15 58418804 58418956 -27276798 + MER5B DNA MER1_type 23 178 0 244 280 320 0 chr15 58418975 58419075 -27276679 - MER5A DNA MER1_type -9 180 49 1298 215 10 31 chr15 58419216 58419528 -27276226 + AluJb SINE Alu 1 306 0 1710 222 162 65 chr15 58419591 58420360 -27275394 - MER63C DNA MER1_type -130 930 70 500 30 15 0 chr15 58420360 58420426 -27275328 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1710 222 162 65 chr15 58420426 58420503 -27275251 - MER63C DNA MER1_type -990 70 2 244 310 72 19 chr15 58422105 58422321 -27273433 + L1P LINE L1 4095 4328 -1818 229 328 86 33 chr15 58422509 58422753 -27273001 + L1MC4a LINE L1 4579 4835 -1311 510 297 76 67 chr15 58423150 58423444 -27272310 + L1MC4a LINE L1 5317 5620 -2188 2281 99 10 0 chr15 58423444 58423736 -27272018 + AluSx SINE Alu 1 295 -17 510 297 76 67 chr15 58423736 58423993 -27271761 + L1MC4a LINE L1 5620 5873 -1935 259 295 41 8 chr15 58424042 58424164 -27271590 + HAL1b LINE L1 1202 1327 -21 24839 27 5 0 chr15 58424419 58427978 -27267776 + L1PA2 LINE L1 2593 6155 0 241 246 209 0 chr15 58428183 58428293 -27267461 + L1ME LINE L1 5533 5665 -456 659 24 24 0 chr15 58428295 58428379 -27267375 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 228 245 0 0 chr15 58428385 58428434 -27267320 + GA-rich Low_complexity Low_complexity 2 50 0 540 264 127 35 chr15 58428628 58428999 -27266755 + L1ME4a LINE L1 5421 5825 -296 1923 130 0 11 chr15 58429005 58429319 -27266435 + AluSx SINE Alu 1 311 0 692 144 16 0 chr15 58429733 58429858 -27265896 + CT-rich Low_complexity Low_complexity 3 129 0 297 319 68 42 chr15 58429880 58430071 -27265683 + MLT1L LTR MaLR 209 404 -211 813 118 29 22 chr15 58430135 58430271 -27265483 + L1MB1 LINE L1 6032 6168 0 954 190 5 11 chr15 58430903 58431087 -27264667 + MER90 LTR ERV1 432 614 0 212 274 47 85 chr15 58431348 58431454 -27264300 + L2 LINE L2 3162 3263 -9 763 328 0 55 chr15 58431529 58431800 -27263954 - MIR SINE MIR -5 257 2 2498 145 14 0 chr15 58431832 58432191 -27263563 + THE1B LTR MaLR 1 364 0 411 316 44 56 chr15 58432405 58432955 -27262799 + L1M4 LINE L1 3283 3825 -2321 374 271 52 44 chr15 58433463 58433692 -27262062 + L1M4 LINE L1 3212 3442 -2704 854 125 31 0 chr15 58433881 58434009 -27261745 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr15 58434788 58434813 -27260941 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 587 238 173 11 chr15 58435956 58436141 -27259613 - MIR SINE MIR -8 254 40 255 336 8 25 chr15 58436182 58436304 -27259450 + MIR SINE MIR 20 139 -123 404 278 0 31 chr15 58436657 58436754 -27259000 - MIR SINE MIR -98 110 17 253 299 0 0 chr15 58437500 58437567 -27258187 - Charlie8 DNA MER1_type -7 2410 2344 208 203 17 51 chr15 58438085 58438144 -27257610 + G-rich Low_complexity Low_complexity 3 59 0 241 320 101 36 chr15 58438630 58438877 -27256877 + L2 LINE L2 2715 2977 -337 1151 272 0 0 chr15 58439052 58439302 -27256452 + MIR SINE MIR 12 261 -1 196 216 162 40 chr15 58439361 58439435 -27256319 + L2 LINE L2 3229 3311 -2 326 220 26 13 chr15 58439942 58440042 -27255712 + MIR SINE MIR 69 143 -65 2446 84 3 0 chr15 58440692 58441000 -27254754 - AluSq SINE Alu -2 311 3 252 246 0 16 chr15 58441410 58441471 -27254283 + CT-rich Low_complexity Low_complexity 3 62 0 227 204 19 19 chr15 58441545 58441599 -27254155 + CT-rich Low_complexity Low_complexity 5 58 0 195 220 0 0 chr15 58441766 58441816 -27253938 + (TG)n Simple_repeat Simple_repeat 1 50 0 354 196 168 56 chr15 58441846 58441899 -27253855 - L1ME LINE L1 -351 5811 5765 1662 172 13 19 chr15 58441899 58442207 -27253547 - AluJo SINE Alu -6 306 1 354 196 168 56 chr15 58442207 58442296 -27253458 - L1ME LINE L1 -397 5765 5653 319 239 128 98 chr15 58442308 58442613 -27253141 - MLT1H LTR MaLR -104 445 132 640 204 121 24 chr15 58442741 58442947 -27252807 - L1ME LINE L1 -611 5553 5328 396 0 0 0 chr15 58443442 58443486 -27252268 + (CA)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr15 58443485 58443516 -27252238 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 380 157 48 24 chr15 58444554 58444637 -27251117 - L1ME4a LINE L1 -70 6051 5967 255 217 36 72 chr15 58444657 58444740 -27251014 - L2 LINE L2 -7 3306 3227 384 214 40 165 chr15 58444805 58445053 -27250701 - MIR SINE MIR 0 262 46 775 283 42 12 chr15 58448039 58448279 -27247475 + MIR SINE MIR 1 247 -15 910 122 24 29 chr15 58448564 58448721 -27247033 - MER20 DNA MER1_type -49 170 10 1314 116 21 0 chr15 58451278 58451467 -27244287 + Tigger3(Golem) DNA MER2_type 2836 3028 -1 3736 227 112 18 chr15 58451467 58452670 -27243084 - Charlie2a DNA MER1_type -574 2288 972 2639 10 3 0 chr15 58452794 58453086 -27242668 + AluYa5 SINE Alu 1 293 -18 465 303 96 5 chr15 58453207 58453405 -27242349 - HAL1b LINE L1 -699 649 434 765 244 63 20 chr15 58453502 58453756 -27241998 - HAL1b LINE L1 -738 610 346 6251 74 2 8 chr15 58453756 58454577 -27241177 + L1PA13 LINE L1 5346 6161 -2 356 249 13 96 chr15 58454630 58454859 -27240895 - HAL1b LINE L1 -1048 300 91 476 246 8 22 chr15 58455223 58455357 -27240397 - MIR SINE MIR -10 252 121 22 35 0 0 chr15 58456019 58456048 -27239706 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 58456630 58456656 -27239098 + AT_rich Low_complexity Low_complexity 1 26 0 373 288 56 0 chr15 58457276 58457401 -27238353 + MIR SINE MIR 18 149 -113 1031 198 77 21 chr15 58457412 58457739 -27238015 - MSTD LTR MaLR 0 396 1 299 351 160 37 chr15 58457794 58458144 -27237610 + L2 LINE L2 2245 2637 -677 928 232 91 134 chr15 58458145 58458719 -27237035 + MLT1H1 LTR MaLR 1 555 0 180 376 37 9 chr15 58459138 58459247 -27236507 + MER5A DNA MER1_type 43 154 -35 322 302 66 0 chr15 58459577 58459683 -27236071 + L2 LINE L2 3157 3269 -3 1022 285 134 11 chr15 58460971 58461336 -27234418 - L2 LINE L2 -3 3310 2901 267 156 62 62 chr15 58461345 58461505 -27234249 + (TATAA)n Simple_repeat Simple_repeat 4 163 0 607 261 122 108 chr15 58461682 58461739 -27234015 - L2 LINE L2 0 3272 3217 671 255 107 15 chr15 58461739 58461935 -27233819 - MER58C DNA MER1_type -1 214 1 607 261 122 108 chr15 58461935 58462229 -27233525 - L2 LINE L2 -55 3217 2916 226 262 0 0 chr15 58462278 58462320 -27233434 - Charlie8 DNA MER1_type 0 2417 2376 350 157 214 0 chr15 58462428 58462517 -27233237 - Charlie8 DNA MER1_type -2182 235 128 834 156 44 0 chr15 58462575 58462710 -27233044 + FRAM SINE Alu 12 152 -24 261 171 0 49 chr15 58462913 58462995 -27232759 + GA-rich Low_complexity Low_complexity 2 79 0 1166 240 80 58 chr15 58463134 58463596 -27232158 - L2 LINE L2 0 3313 2842 1448 246 123 3 chr15 58463813 58464394 -27231360 + Charlie2 DNA MER1_type 1 667 -2182 4408 133 12 52 chr15 58466272 58466386 -27229368 - Tigger3b DNA MER2_type -2282 746 629 2218 96 10 7 chr15 58466386 58466687 -27229067 - AluSx SINE Alu -10 302 1 4408 133 12 52 chr15 58466687 58467140 -27228614 - Tigger3b DNA MER2_type -2399 629 216 2140 125 0 7 chr15 58467140 58467436 -27228318 - AluSx SINE Alu -18 294 1 4408 133 12 52 chr15 58467436 58467643 -27228111 - Tigger3b DNA MER2_type -2812 216 2 1405 197 40 87 chr15 58467646 58468241 -27227513 + Charlie2 DNA MER1_type 2295 2861 -1 217 234 60 132 chr15 58468249 58468416 -27227338 - MIR3 SINE MIR -14 194 40 500 221 0 0 chr15 58469414 58469527 -27226227 + L1M4 LINE L1 5188 5300 -846 * 780 242 10 5 chr15 58469524 58469722 -27226032 + L1MD3 LINE L1 7797 7995 0 431 186 34 51 chr15 58469720 58469838 -27225916 + L1M LINE L1 5285 5400 -766 * 860 223 23 51 chr15 58469832 58470088 -27225666 + L1M4 LINE L1 5 253 -6289 4189 233 60 34 chr15 58470109 58471628 -27224126 + L1M4 LINE L1 3353 4900 -1744 2858 213 63 36 chr15 58471654 58472537 -27223217 + L1M4 LINE L1 3997 4903 -1243 15660 67 3 7 chr15 58472545 58472901 -27222853 - HERVL-A1 LTR ERVL -3578 2076 1720 2439 78 0 3 chr15 58472901 58473208 -27222546 - AluY SINE Alu -5 306 1 15660 67 3 7 chr15 58473208 58474934 -27220820 - HERVL-A1 LTR ERVL -3934 1720 1 2793 80 61 14 chr15 58474934 58475358 -27220396 - MLT2A1 LTR ERVL 0 444 1 527 329 106 44 chr15 58475378 58475785 -27219969 - L1MEd LINE L1 -5262 857 426 250 386 31 0 chr15 58475812 58475939 -27219815 - L3 LINE CR1 -466 1111 981 213 357 153 13 chr15 58476018 58476175 -27219579 - MIR3 SINE MIR -9 199 21 444 150 0 0 chr15 58476241 58476321 -27219433 + (CA)n Simple_repeat Simple_repeat 2 81 0 521 136 8 32 chr15 58476745 58476870 -27218884 + CT-rich Low_complexity Low_complexity 3 124 0 309 270 62 73 chr15 58476983 58477161 -27218593 - L1ME4a LINE L1 -105 6016 5841 717 296 28 16 chr15 58477199 58477446 -27218308 - MIR SINE MIR -1 261 12 307 281 16 23 chr15 58477446 58477574 -27218180 - L1ME4a LINE L1 -310 5811 5685 342 312 17 8 chr15 58477578 58477812 -27217942 - L1ME4a LINE L1 -1002 5144 4909 433 305 53 0 chr15 58478075 58478206 -27217548 + MIR SINE MIR 48 185 -77 1340 309 132 41 chr15 58478713 58479934 -27215820 + L2 LINE L2 1520 2924 -348 228 111 0 0 chr15 58479934 58479970 -27215784 + (CA)n Simple_repeat Simple_repeat 2 37 0 1340 309 132 41 chr15 58479970 58480354 -27215400 + L2 LINE L2 2924 3272 0 1013 80 0 12 chr15 58480445 58480608 -27215146 + (TAGA)n Simple_repeat Simple_repeat 3 163 0 2039 92 115 9 chr15 58480608 58480955 -27214799 - MLT2A1 LTR ERVL -60 384 1 23 33 0 0 chr15 58481042 58481072 -27214682 + AT_rich Low_complexity Low_complexity 1 30 0 274 250 150 50 chr15 58481736 58481856 -27213898 + MIR SINE MIR 86 217 -45 569 252 9 0 chr15 58482228 58482339 -27213415 - MER81 DNA DNA 0 114 3 4441 133 17 18 chr15 58482406 58483187 -27212567 + L1MA8 LINE L1 5500 6279 -12 22 35 0 0 chr15 58483188 58483217 -27212537 + AT_rich Low_complexity Low_complexity 1 29 0 667 193 187 0 chr15 58483297 58483447 -27212307 - MER5B DNA MER1_type 0 178 1 465 264 81 40 chr15 58485082 58485256 -27210498 - L2 LINE L2 0 3313 3133 504 236 82 101 chr15 58486435 58486753 -27209001 + MLT1H LTR MaLR 116 427 -122 332 340 109 0 chr15 58486839 58486978 -27208776 - MIR SINE MIR -62 146 45 27 49 0 0 chr15 58487128 58487169 -27208585 + AT_rich Low_complexity Low_complexity 1 41 0 7240 141 21 55 chr15 58487169 58489742 -27206012 - L1MA4 LINE L1 0 6300 3802 7542 29 5 0 chr15 58489842 58490953 -27204801 + L1PA4 LINE L1 5041 6155 0 248 254 0 0 chr15 58491115 58491174 -27204580 + Charlie8 DNA MER1_type 3 61 -2356 459 0 0 0 chr15 58491894 58491945 -27203809 + (TG)n Simple_repeat Simple_repeat 1 51 0 1126 201 186 20 chr15 58492095 58492487 -27203267 - Charlie4a DNA MER1_type 0 508 52 9740 20 1 0 chr15 58492513 58493697 -27202057 - L1PA3 LINE L1 -1160 4986 3802 7694 21 1 0 chr15 58493697 58494869 -27200885 + L1PA3 LINE L1 4983 6155 0 872 283 135 40 chr15 58495622 58496703 -27199051 - L1MA4 LINE L1 -2642 3504 2285 322 230 46 124 chr15 58496729 58496946 -27198808 - L1MDa LINE L1 -3903 2637 2438 486 338 43 46 chr15 58497444 58497725 -27198029 - HAL1 LINE L1 -1009 1498 1219 412 237 59 31 chr15 58497750 58497927 -27197827 + MLT1H1 LTR MaLR 1 187 -393 21 0 0 0 chr15 58498054 58498075 -27197679 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr15 58498273 58498305 -27197449 + (TTC)n Simple_repeat Simple_repeat 3 34 0 831 184 199 97 chr15 58498691 58499022 -27196732 - MSTD LTR MaLR 0 396 1 2847 105 13 59 chr15 58499168 58499645 -27196109 - L1PA15 LINE L1 -8 6157 5703 237 200 40 0 chr15 58500010 58500060 -27195694 + MER5B DNA MER1_type 125 176 -2 1086 264 19 6 chr15 58500141 58500455 -27195299 + MER58B DNA MER1_type 2 319 -22 307 216 14 14 chr15 58500849 58500923 -27194831 - HERVL40 LTR ERVL -2104 3426 3353 232 189 0 19 chr15 58501474 58501527 -27194227 + GA-rich Low_complexity Low_complexity 2 53 0 483 264 181 0 chr15 58502529 58502673 -27193081 - MER5A DNA MER1_type -6 183 14 412 322 190 19 chr15 58503622 58503743 -27192011 + MIR SINE MIR 13 112 -150 3477 87 0 4 chr15 58503743 58504204 -27191550 - LTR46 LTR ERV1 -1 459 1 412 322 190 19 chr15 58504204 58504293 -27191461 + MIR SINE MIR 112 259 -3 581 289 45 8 chr15 58504368 58504614 -27191140 - MLT1L LTR MaLR -4 611 357 213 345 127 0 chr15 58504815 58504925 -27190829 - MER5B DNA MER1_type -30 148 25 * 249 323 21 21 chr15 58504846 58504942 -27190812 + MER5A DNA MER1_type 86 181 -8 215 252 146 10 chr15 58506700 58506803 -27188951 + MIR SINE MIR 20 136 -72 2233 129 3 0 chr15 58507466 58507777 -27187977 - AluSx SINE Alu 0 312 1 269 242 0 33 chr15 58507819 58507910 -27187844 + MIR SINE MIR 146 233 -29 259 270 140 30 chr15 58508039 58508139 -27187615 + L2 LINE L2 2272 2382 -932 555 245 150 21 chr15 58508190 58508423 -27187331 + Charlie8 DNA MER1_type 7 269 -2148 318 306 37 37 chr15 58508818 58508952 -27186802 + HAL1b LINE L1 253 386 -962 1769 169 46 25 chr15 58509059 58509425 -27186329 - MLT1A2 LTR MaLR 0 374 1 468 238 48 0 chr15 58509548 58509695 -27186059 + MER103 DNA DNA 4 157 -9 609 371 42 18 chr15 58510059 58510509 -27185245 + L1M4 LINE L1 4283 4743 -1403 1740 224 78 12 chr15 58510510 58510996 -27184758 - LTR40a LTR ERVL -1 518 1 1325 220 10 0 chr15 58510998 58511335 -27184419 - HERVL40 LTR ERVL -2 5528 2791 331 359 8 12 chr15 58511197 58511448 -27184306 - MER89-int LTR ERV1 -281 6520 6271 * 6375 231 64 25 chr15 58511452 58513013 -27182741 - HERVL40 LTR ERVL -1205 4325 2826 657 155 39 0 chr15 58513013 58513142 -27182612 + L1MD1 LINE L1 6109 6242 0 1952 111 27 60 chr15 58513142 58513507 -27182247 + L1MA4 LINE L1 5937 6294 -6 6375 231 64 25 chr15 58513507 58513680 -27182074 - HERVL40 LTR ERVL -2703 2827 2522 651 278 83 28 chr15 58513679 58514329 -27181425 - HERVL40 LTR ERVL -3919 1611 918 * 304 186 0 0 chr15 58514558 58514617 -27181137 - HERVL40 LTR ERVL -5455 75 17 1389 250 21 61 chr15 58514621 58515097 -27180657 - LTR40a LTR ERVL 0 519 63 358 153 0 35 chr15 58515281 58515366 -27180388 + CT-rich Low_complexity Low_complexity 4 85 0 21 57 0 0 chr15 58515945 58515980 -27179774 + AT_rich Low_complexity Low_complexity 1 35 0 314 322 95 42 chr15 58516604 58516887 -27178867 + L2 LINE L2 2548 2845 -469 349 367 0 0 chr15 58518148 58518336 -27177418 - MER117 DNA MER1_type 0 197 10 336 332 26 37 chr15 58518382 58518572 -27177182 - L2 LINE L2 -27 3286 3099 * 347 297 35 28 chr15 58518571 58518716 -27177038 + MIR SINE MIR 117 262 0 208 316 147 22 chr15 58518841 58518977 -27176777 + L2 LINE L2 3115 3267 -5 13592 192 13 9 chr15 58519238 58522584 -27173170 + L1P LINE L1 1529 4884 -1262 2815 10 0 0 chr15 58522584 58522888 -27172866 + AluYa5 SINE Alu 1 304 -7 13592 192 13 9 chr15 58522888 58523366 -27172388 + L1P LINE L1 4884 5359 -787 5165 124 40 10 chr15 58523883 58524702 -27171052 + L1PA15 LINE L1 5317 6160 -5 269 271 0 14 chr15 58524822 58524892 -27170862 + MLT1L LTR MaLR 205 273 -342 1258 216 49 0 chr15 58525336 58525642 -27170112 - MER33 DNA MER1_type 0 324 4 755 292 169 18 chr15 58525998 58526578 -27169176 + L2 LINE L2 2347 3018 -254 338 264 147 45 chr15 58526728 58527020 -27168734 - L2 LINE L2 -1004 2310 1989 216 336 26 0 chr15 58527202 58527315 -27168439 + L2 LINE L2 2042 2157 -1157 625 248 24 63 chr15 58528338 58528544 -27167210 + MLT1L LTR MaLR 1 198 -417 427 265 68 12 chr15 58528772 58528951 -27166803 + MLT1L LTR MaLR 374 605 -10 373 310 52 30 chr15 58529191 58529423 -27166331 - L1M4 LINE L1 -1499 4647 4411 553 308 103 8 chr15 58529499 58529879 -27165875 + L1M4 LINE L1 4585 5000 -1146 403 276 41 94 chr15 58529888 58530134 -27165620 - L1M4 LINE L1 -2395 3751 3520 315 0 0 0 chr15 58530141 58530176 -27165578 + (TG)n Simple_repeat Simple_repeat 1 35 0 605 228 13 47 chr15 58530216 58530365 -27165389 - MIR SINE MIR -100 162 19 248 285 0 61 chr15 58530385 58530424 -27165330 - L1M4 LINE L1 -2647 3499 3459 1005 265 81 39 chr15 58530424 58530858 -27164896 - LTR16A1 LTR ERVL -4 453 2 248 285 0 61 chr15 58530858 58530983 -27164771 - L1M4 LINE L1 -2687 3459 3345 * 3377 235 55 27 chr15 58530976 58532489 -27163265 - L1ME1 LINE L1 0 6334 4823 1183 187 17 4 chr15 58532495 58532736 -27163018 + L1ME2 LINE L1 4616 4859 -1287 916 239 51 62 chr15 58532723 58533095 -27162659 + L1ME2 LINE L1 5791 6158 -6 * 326 191 43 109 chr15 58534331 58534510 -27161244 + MIR SINE MIR 39 195 -61 580 251 12 31 chr15 58535774 58535937 -27159817 + L1ME2 LINE L1 5995 6154 -10 416 245 39 58 chr15 58535979 58536187 -27159567 + L1MC4 LINE L1 7837 8040 -2 1423 230 81 70 chr15 58536408 58536972 -27158782 - L1ME1 LINE L1 -8 6158 5597 1664 126 4 16 chr15 58539966 58540220 -27155534 + AluSg1 SINE Alu 58 308 -1 1805 164 7 16 chr15 58540342 58540652 -27155102 + AluSx SINE Alu 1 307 -5 320 329 107 47 chr15 58541193 58541264 -27154490 + L2 LINE L2 1639 1704 -1610 2018 151 3 13 chr15 58541264 58541575 -27154179 + AluJo SINE Alu 1 308 -4 320 329 107 47 chr15 58541575 58542010 -27153744 + L2 LINE L2 1704 2175 -1139 340 360 12 18 chr15 58542045 58542209 -27153545 - LTR16C LTR ERVL -30 461 299 1977 336 88 28 chr15 58542632 58543939 -27151815 - ERVL LTR ERVL -387 5377 3992 371 319 91 69 chr15 58544144 58544807 -27150947 + ERVL LTR ERVL 1218 1940 -3824 * 2020 305 65 45 chr15 58544799 58545102 -27150652 + ERVL LTR ERVL 2050 2345 -3419 978 216 5 11 chr15 58545102 58545292 -27150462 + MER5A DNA MER1_type 1 189 0 2020 305 65 45 chr15 58545292 58546164 -27149590 + ERVL LTR ERVL 2345 3249 -2515 622 250 64 37 chr15 58546339 58546527 -27149227 - MLT1J2 LTR MaLR -18 432 240 465 254 51 0 chr15 58546578 58546696 -27149058 - MLT1J2 LTR MaLR -303 147 24 338 274 84 11 chr15 58547193 58547288 -27148466 - Charlie8 DNA MER1_type -2315 102 1 1174 201 112 0 chr15 58547897 58548156 -27147598 - L1MB4 LINE L1 -6 6174 5887 1012 245 102 13 chr15 58548261 58548575 -27147179 - LTR16C LTR ERVL -3 488 147 1037 240 5 5 chr15 58549073 58549281 -27146473 - MER58A DNA MER1_type 0 224 17 565 293 63 5 chr15 58549548 58549739 -27146015 - MIR SINE MIR -41 221 20 268 248 93 62 chr15 58551070 58551199 -27144555 + LTR67 LTR ERVL 425 557 0 328 275 9 28 chr15 58551774 58551883 -27143871 + LTR67 LTR ERVL 444 550 -7 203 293 52 0 chr15 58552050 58552108 -27143646 - L2 LINE L2 0 3272 3212 205 336 39 31 chr15 58552280 58552408 -27143346 - L2 LINE L2 -470 2844 2716 269 206 73 29 chr15 58552529 58552597 -27143157 + MIR SINE MIR 175 245 -17 635 290 59 35 chr15 58552678 58552933 -27142821 + MIR SINE MIR 2 262 0 2005 192 68 50 chr15 58553944 58554403 -27141351 + MLT1C LTR MaLR 1 467 0 300 321 202 27 chr15 58554458 58554904 -27140850 + L2 LINE L2 1550 2073 -1241 417 247 63 70 chr15 58555572 58555730 -27140024 + MER103 DNA DNA 3 159 -7 2899 7 0 0 chr15 58555960 58556269 -27139485 - AluY SINE Alu -2 309 1 715 208 0 0 chr15 58556948 58557068 -27138686 - FAM SINE Alu -15 170 51 227 267 171 38 chr15 58557082 58557187 -27138567 + L2 LINE L2 3143 3261 -11 242 320 8 57 chr15 58557658 58557780 -27137974 - L2 LINE L2 -4 3268 3153 225 308 92 25 chr15 58558835 58558955 -27136799 + L2 LINE L2 3139 3266 -6 419 278 107 18 chr15 58560981 58561150 -27134604 - MIR SINE MIR -73 189 6 224 365 12 24 chr15 58561351 58561436 -27134318 - L2 LINE L2 -6 3266 3183 533 325 100 4 chr15 58562901 58563132 -27132622 - MIR SINE MIR -6 256 4 444 319 55 72 chr15 58563613 58563920 -27131834 - L2 LINE L2 -3 3269 2968 393 243 0 0 chr15 58564184 58564258 -27131496 - Charlie4 DNA MER1_type 0 1961 1888 1283 140 37 55 chr15 58564269 58564541 -27131213 - L1MD3 LINE L1 0 7995 7729 436 224 65 61 chr15 58564542 58564787 -27130967 - Charlie4 DNA MER1_type -71 1890 1645 1123 193 71 19 chr15 58564992 58565261 -27130493 - Charlie4 DNA MER1_type -1668 293 11 358 266 72 14 chr15 58565341 58565480 -27130274 + Charlie8 DNA MER1_type 64 210 -2207 260 303 0 0 chr15 58565608 58565684 -27130070 + Charlie8 DNA MER1_type 2341 2416 -1 354 273 44 104 chr15 58565780 58565897 -27129857 + MIR3 SINE MIR 37 141 -67 2047 120 17 7 chr15 58565897 58566210 -27129544 + AluSx SINE Alu 1 312 0 354 273 44 104 chr15 58566210 58566275 -27129479 + MIR3 SINE MIR 141 208 0 185 286 71 48 chr15 58566257 58566383 -27129371 + L2 LINE L2 3183 3311 -2 * 556 228 16 8 chr15 58566396 58566523 -27129231 + Charlie4 DNA MER1_type 11 138 -1823 248 241 36 24 chr15 58566905 58566988 -27128766 + LTR67 LTR ERVL 472 555 -2 797 289 111 18 chr15 58568325 58568840 -27126914 + L1ME3 LINE L1 1093 1655 -4875 1134 244 37 20 chr15 58569344 58569639 -27126115 + Charlie5 DNA MER1_type 2 301 -2311 388 281 30 22 chr15 58569631 58569766 -27125988 + Charlie5 DNA MER1_type 261 396 -2216 * 5671 186 90 5 chr15 58569762 58571037 -27124717 + Charlie5 DNA MER1_type 856 2239 -373 7290 183 45 55 chr15 58571043 58574293 -27121461 + L1MB2 LINE L1 2890 6147 -24 967 179 52 83 chr15 58574293 58574363 -27121391 + Charlie5 DNA MER1_type 2303 2374 -250 1797 177 6 22 chr15 58574363 58574680 -27121074 - AluJb SINE Alu 0 312 1 967 179 52 83 chr15 58574680 58574934 -27120820 + Charlie5 DNA MER1_type 2374 2617 -7 913 61 0 0 chr15 58574958 58575072 -27120682 - L1MA1 LINE L1 -4 6298 6185 272 285 65 47 chr15 58575424 58575733 -27120021 + L1ME3 LINE L1 2417 2732 -3808 540 263 46 7 chr15 58575740 58575892 -27119862 - LTR67 LTR ERVL -8 549 392 22 0 0 0 chr15 58576238 58576260 -27119494 + AT_rich Low_complexity Low_complexity 1 22 0 336 314 147 6 chr15 58576316 58576635 -27119119 + L1ME3 LINE L1 4809 5172 -1368 1043 258 65 45 chr15 58576700 58577391 -27118363 + L1ME3 LINE L1 5281 5984 -574 2325 238 62 44 chr15 58577392 58578103 -27117651 + L1MEc LINE L1 45 768 -5628 377 284 35 33 chr15 58578184 58578442 -27117312 + L1ME3 LINE L1 6103 6352 -206 2170 172 31 10 chr15 58578510 58578893 -27116861 + MSTC LTR MaLR 37 427 -1 311 211 391 6 chr15 58578900 58579061 -27116693 - MIR SINE MIR -29 233 11 740 284 45 5 chr15 58582064 58582286 -27113468 + MIR SINE MIR 26 256 -6 263 146 18 0 chr15 58583400 58583455 -27112299 + CT-rich Low_complexity Low_complexity 4 59 0 318 277 127 24 chr15 58585210 58585376 -27110378 + MIR SINE MIR 46 228 -34 240 261 14 14 chr15 58585701 58585770 -27109984 + CT-rich Low_complexity Low_complexity 3 71 0 504 277 99 98 chr15 58586032 58586160 -27109594 - L1MC4a LINE L1 -747 5399 5273 14660 130 43 14 chr15 58586160 58586511 -27109243 - Tigger1 DNA MER2_type 0 2418 2078 1941 133 60 0 chr15 58586511 58586796 -27108958 + AluSq SINE Alu 1 302 -11 14660 130 43 14 chr15 58586796 58588795 -27106959 - Tigger1 DNA MER2_type -340 2078 1 504 277 99 98 chr15 58588795 58589250 -27106504 - L1MC4a LINE L1 -873 5273 5531 459 19 0 0 chr15 58589250 58589302 -27106452 + U2 snRNA snRNA 1 52 -136 504 277 99 98 chr15 58589302 58589649 -27106105 - L1MC4a LINE L1 -614 5532 5187 22 35 0 0 chr15 58589783 58589812 -27105942 + AT_rich Low_complexity Low_complexity 1 29 0 253 232 89 36 chr15 58589893 58590005 -27105749 - L1 LINE L1 -1306 4840 4723 23 54 0 0 chr15 58590326 58590363 -27105391 + AT_rich Low_complexity Low_complexity 1 37 0 301 277 29 22 chr15 58590414 58590551 -27105203 - L1 LINE L1 -3174 2972 2835 378 238 9 29 chr15 58591118 58591223 -27104531 + MIR SINE MIR 118 220 -42 213 39 0 0 chr15 58591267 58591293 -27104461 + (TC)n Simple_repeat Simple_repeat 1 26 0 2162 109 0 0 chr15 58591294 58591570 -27104184 - AluSq SINE Alu -37 276 1 234 0 0 0 chr15 58591575 58591601 -27104153 + (T)n Simple_repeat Simple_repeat 1 26 0 597 278 37 42 chr15 58591817 58592058 -27103696 + MIR SINE MIR 9 248 -14 211 244 0 0 chr15 58592174 58592219 -27103535 - L2 LINE L2 -11 3261 3217 269 272 7 73 chr15 58593478 58593614 -27102140 - L1ME LINE L1 -658 5463 5337 3797 68 34 0 chr15 58594413 58594909 -27100845 - LTR10D LTR ERV1 0 513 1 21 0 0 0 chr15 58595095 58595116 -27100638 + AT_rich Low_complexity Low_complexity 1 21 0 235 182 26 39 chr15 58595232 58595309 -27100445 + (CCCCG)n Simple_repeat Simple_repeat 3 78 0 387 0 0 0 chr15 58597134 58597177 -27098577 + (TTA)n Simple_repeat Simple_repeat 3 45 0 7291 28 8 14 chr15 58597180 58598047 -27097707 - L1PA5 LINE L1 -20 6134 5273 1941 53 4 0 chr15 58598036 58598280 -27097474 + L1P LINE L1 4642 4886 -1260 * 677 145 20 20 chr15 58598456 58598608 -27097146 + CT-rich Low_complexity Low_complexity 4 155 0 370 246 66 9 chr15 58598696 58598828 -27096926 - MIR SINE MIR -67 141 52 194 224 0 41 chr15 58599414 58599463 -27096291 - MIR SINE MIR -86 122 76 234 0 0 0 chr15 58602645 58602671 -27093083 + (TG)n Simple_repeat Simple_repeat 2 27 0 242 311 25 41 chr15 58604966 58605088 -27090666 + MIR3 SINE MIR 44 163 -45 2446 80 0 3 chr15 58605166 58605465 -27090289 + AluSp SINE Alu 1 298 -15 336 276 112 9 chr15 58605710 58605826 -27089928 + L2 LINE L2 3144 3271 -1 262 306 56 0 chr15 58605879 58605951 -27089803 + L2 LINE L2 3189 3264 -49 185 289 66 13 chr15 58605949 58606025 -27089729 + L3 LINE CR1 1349 1428 -149 * 1159 229 149 22 chr15 58606040 58606403 -27089351 + MLT1I LTR MaLR 1 409 0 416 230 56 6 chr15 58607465 58607626 -27088128 + (TGAG)n Simple_repeat Simple_repeat 2 170 0 237 242 30 0 chr15 58608620 58608686 -27087068 + MIR3 SINE MIR 93 160 -48 312 324 9 9 chr15 58608883 58608991 -27086763 + MIR SINE MIR 38 145 -63 231 164 0 49 chr15 58609752 58609813 -27085941 + L1MC4 LINE L1 6638 6695 -1347 184 333 26 0 chr15 58610188 58610266 -27085488 - MIR SINE MIR -132 130 51 3278 152 28 4 chr15 58610525 58611031 -27084723 + L1PA13 LINE L1 1 518 -6269 454 316 32 11 chr15 58611588 58611775 -27083979 + MLT1I LTR MaLR 93 283 -126 1250 271 115 23 chr15 58611781 58612380 -27083374 - L1M4 LINE L1 -1859 4287 3634 436 293 43 0 chr15 58612414 58612622 -27083132 - L1M4 LINE L1 -2690 3456 3240 1734 207 32 29 chr15 58612636 58613012 -27082742 - MLT1F LTR MaLR 0 542 166 377 316 68 11 chr15 58613346 58613536 -27082218 - MIR SINE MIR -23 239 39 1956 178 42 59 chr15 58613868 58614339 -27081415 + MLT1C LTR MaLR 1 463 -4 225 0 0 0 chr15 58615046 58615071 -27080683 + (A)n Simple_repeat Simple_repeat 1 25 0 413 282 49 7 chr15 58615233 58615375 -27080379 + MIR SINE MIR 59 206 -56 2302 101 3 0 chr15 58615387 58615683 -27080071 + AluSg SINE Alu 1 297 -13 1419 222 6 6 chr15 58615853 58616173 -27079581 - MER33 DNA MER1_type -2 322 3 921 231 68 23 chr15 58617070 58617334 -27078420 + MER115 DNA AcHobo 410 685 -8 1471 170 28 68 chr15 58618529 58618852 -27076902 + AluJo SINE Alu 1 310 -2 321 352 43 39 chr15 58620254 58620714 -27075040 - L2 LINE L2 -1943 1371 910 406 311 20 41 chr15 58622687 58622881 -27072873 + LTR16A1 LTR ERVL 195 384 -73 348 268 0 81 chr15 58622881 58623004 -27072750 - MER81 DNA DNA 0 114 2 393 259 0 0 chr15 58623005 58623086 -27072668 + LTR16A1 LTR ERVL 377 457 0 242 302 0 0 chr15 58623476 58623539 -27072215 + L2 LINE L2 3251 3313 0 367 253 40 0 chr15 58623717 58623816 -27071938 - MER110A LTR ERV1 -297 171 69 190 337 0 48 chr15 58625344 58625427 -27070327 - MIR SINE MIR -88 120 42 891 196 12 6 chr15 58625464 58625637 -27070117 + MER45A DNA AcHobo 4 177 -1 230 207 17 0 chr15 58626429 58626487 -27069267 + GA-rich Low_complexity Low_complexity 2 60 0 248 294 162 3 chr15 58626498 58626596 -27069158 - L1P4 LINE L1 -566 5595 5486 347 258 57 121 chr15 58626857 58627121 -27068633 + MLT1I LTR MaLR 128 374 -35 348 96 0 123 chr15 58627137 58627210 -27068544 - LTR9 LTR ERV1 -81 531 468 246 136 0 45 chr15 58627277 58627343 -27068411 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 1716 162 40 0 chr15 58627961 58628288 -27067466 - L1MA8 LINE L1 0 6291 5952 476 159 0 0 chr15 58628836 58628905 -27066849 + Tigger5 DNA MER2_type 2255 2323 0 948 228 53 18 chr15 58629047 58629328 -27066426 - L1M4 LINE L1 -1964 4182 3892 22 35 0 0 chr15 58629340 58629369 -27066385 + AT_rich Low_complexity Low_complexity 1 29 0 500 324 60 39 chr15 58629508 58629792 -27065962 - L3 LINE CR1 -6 1571 1282 1107 222 30 36 chr15 58629919 58630221 -27065533 + MLT1H LTR MaLR 21 320 -229 506 291 58 58 chr15 58630244 58630333 -27065421 - L3 LINE CR1 -682 895 807 1690 189 3 17 chr15 58630333 58630635 -27065119 - AluJo SINE Alu -14 298 1 506 291 58 58 chr15 58630635 58630693 -27065061 - L3 LINE CR1 -770 807 750 1908 87 101 28 chr15 58630693 58630981 -27064773 - AluSc SINE Alu 0 309 1 506 291 58 58 chr15 58630981 58631159 -27064595 - L3 LINE CR1 -826 751 569 238 274 186 18 chr15 58633509 58633622 -27062132 - L3 LINE CR1 -28 1549 1418 284 298 124 0 chr15 58633724 58633845 -27061909 + MIR3 SINE MIR 70 205 -3 301 273 21 17 chr15 58634124 58634252 -27061502 - MIR SINE MIR -32 230 63 383 252 49 19 chr15 58634435 58634586 -27061168 + MIR SINE MIR 2 156 -52 397 290 87 29 chr15 58634600 58634807 -27060947 + MIR SINE MIR 21 239 -23 763 251 127 29 chr15 58635454 58635801 -27059953 - MLT1J1 LTR MaLR 0 446 66 264 234 84 65 chr15 58635972 58636079 -27059675 + L2 LINE L2 3202 3310 -3 655 178 82 15 chr15 58636298 58636433 -27059321 - MER3 DNA MER1_type 0 209 66 298 308 19 9 chr15 58638662 58638769 -27056985 + (CATA)n Simple_repeat Simple_repeat 3 110 0 311 329 18 18 chr15 58638878 58639048 -27056706 + L2 LINE L2 2567 2736 -578 405 310 62 55 chr15 58639210 58639500 -27056254 + L2 LINE L2 2981 3272 0 7892 52 41 0 chr15 58640598 58640885 -27054869 - LTR13 LTR ERVK 0 1007 733 194 0 39 0 chr15 58640885 58640911 -27054843 + (GA)n Simple_repeat Simple_repeat 2 28 0 7892 52 41 0 chr15 58640911 58641590 -27054164 - LTR13 LTR ERVK -274 733 1 1846 226 118 21 chr15 58641818 58642408 -27053346 - MLT1E2 LTR MaLR -7 619 1 240 316 23 15 chr15 58642435 58642568 -27053186 + (TATG)n Simple_repeat Simple_repeat 3 136 0 403 287 22 104 chr15 58642588 58642797 -27052957 + MIR SINE MIR 6 195 -67 475 220 368 0 chr15 58642797 58642979 -27052775 + MIR SINE MIR 3 251 -11 300 303 98 0 chr15 58644152 58644284 -27051470 + L2 LINE L2 2931 3075 -238 1685 215 156 37 chr15 58644783 58645088 -27050666 + Charlie2 DNA MER1_type 2030 2297 -565 2501 57 0 3 chr15 58645088 58645384 -27050370 - AluY SINE Alu -16 295 1 1685 215 156 37 chr15 58645384 58645807 -27049947 + Charlie2 DNA MER1_type 2297 2845 -17 473 260 16 0 chr15 58645906 58646029 -27049725 + MIR SINE MIR 20 144 -118 597 170 44 44 chr15 58646549 58646610 -27049144 - LTR37A LTR ERV1 0 426 366 2115 215 37 62 chr15 58646610 58647178 -27048576 - MLT2B3 LTR ERVL 0 554 1 597 170 44 44 chr15 58647178 58647275 -27048479 - LTR37A LTR ERV1 -59 367 268 355 148 23 68 chr15 58647273 58647361 -27048393 - LTR37A LTR ERV1 -314 112 29 * 397 175 107 29 chr15 58647353 58647456 -27048298 - LTR37A LTR ERV1 -315 111 1 513 212 166 7 chr15 58647536 58647687 -27048067 + LTR33 LTR ERVL 297 471 -50 2029 157 13 43 chr15 58647745 58647913 -27047841 + MLT1A1 LTR MaLR 1 172 -193 2210 140 87 2 chr15 58647913 58648306 -27047448 - MSTB1 LTR MaLR -4 428 3 2029 157 13 43 chr15 58648306 58648512 -27047242 + MLT1A1 LTR MaLR 172 364 -1 21 36 0 0 chr15 58649419 58649447 -27046307 + AT_rich Low_complexity Low_complexity 1 28 0 1289 134 5 0 chr15 58650449 58650636 -27045118 + LTR18B LTR ERVL 1 188 -426 1197 130 119 91 chr15 58650640 58650925 -27044829 + LTR18B LTR ERVL 322 614 0 346 229 28 73 chr15 58651066 58651175 -27044579 + L1M2c LINE L1 3 106 -6683 * 6956 149 25 11 chr15 58651171 58651984 -27043770 + L1M2 LINE L1 4023 4867 -1414 2058 134 144 0 chr15 58651984 58652358 -27043396 - MSTA LTR MaLR 0 428 1 6956 149 25 11 chr15 58652358 58653040 -27042714 + L1M2 LINE L1 4867 5538 -743 695 194 0 22 chr15 58653040 58653179 -27042575 + FRAM SINE Alu 1 40 0 1063 300 91 50 chr15 58656129 58656935 -27038819 + HAL1b LINE L1 60 898 -450 605 262 17 12 chr15 58656947 58657119 -27038635 - MIR SINE MIR -17 245 73 1964 102 0 102 chr15 58657469 58657834 -27037920 + AluSx SINE Alu 1 333 0 2106 155 51 6 chr15 58658185 58658540 -27037214 - MLT1B LTR MaLR -5 385 15 22 0 0 0 chr15 58658641 58658663 -27037091 + AT_rich Low_complexity Low_complexity 1 22 0 240 258 11 56 chr15 58658817 58658906 -27036848 + MIR SINE MIR 54 138 -124 269 321 29 52 chr15 58658917 58659136 -27036618 + L1MC/D LINE L1 5675 5886 -319 4479 55 15 0 chr15 58659577 58660122 -27035632 + LTR13 LTR ERVK 1 553 -454 213 39 0 0 chr15 58660225 58660251 -27035503 + (GA)n Simple_repeat Simple_repeat 1 26 0 378 238 9 29 chr15 58660295 58660400 -27035354 - MIR SINE MIR -42 220 118 301 277 29 22 chr15 58660967 58661104 -27034650 + L1 LINE L1 2835 2972 -3174 23 54 0 0 chr15 58661155 58661192 -27034562 + AT_rich Low_complexity Low_complexity 1 37 0 253 232 89 36 chr15 58661513 58661625 -27034129 + L1 LINE L1 4723 4840 -1306 22 35 0 0 chr15 58661706 58661735 -27034019 + AT_rich Low_complexity Low_complexity 1 29 0 504 277 99 98 chr15 58661869 58662216 -27033538 + L1MC4a LINE L1 5187 5532 -614 459 19 0 0 chr15 58662216 58662268 -27033486 - U2 snRNA snRNA -136 52 1 504 277 99 98 chr15 58662268 58662723 -27033031 + L1MC4a LINE L1 5532 5274 -872 14660 130 43 14 chr15 58662723 58664722 -27031032 + Tigger1 DNA MER2_type 1 2078 -340 1941 133 60 0 chr15 58664722 58665007 -27030747 - AluSq SINE Alu -11 302 1 14660 130 43 14 chr15 58665007 58665358 -27030396 + Tigger1 DNA MER2_type 2078 2418 0 504 277 99 98 chr15 58665358 58665486 -27030268 + L1MC4a LINE L1 5273 5399 -747 257 313 0 0 chr15 58665751 58665818 -27029936 + GA-rich Low_complexity Low_complexity 4 70 0 318 277 127 24 chr15 58666142 58666308 -27029446 - MIR SINE MIR -34 228 46 263 146 18 0 chr15 58668063 58668118 -27027636 + GA-rich Low_complexity Low_complexity 4 59 0 761 279 45 5 chr15 58669232 58669454 -27026300 - MIR SINE MIR -6 256 26 311 211 391 6 chr15 58672383 58672544 -27023210 + MIR SINE MIR 11 233 -29 1720 169 11 0 chr15 58672551 58672830 -27022924 - MSTC LTR MaLR -1 427 146 1700 115 12 12 chr15 58673437 58673681 -27022073 + AluSg SINE Alu 58 301 -9 186 260 20 0 chr15 58675361 58675411 -27020343 - L2 LINE L2 -2 3311 3261 506 239 90 6 chr15 58675713 58675880 -27019874 + MIR SINE MIR 53 233 -29 313 368 42 14 chr15 58676756 58676900 -27018854 - L2 LINE L2 -16 3256 3109 504 234 55 14 chr15 58677297 58677442 -27018312 + MIR SINE MIR 7 157 -105 297 301 185 1 chr15 58678757 58678961 -27016793 + MIR SINE MIR 5 247 -15 316 272 0 33 chr15 58679048 58679140 -27016614 - MIR SINE MIR -92 170 82 24 0 0 0 chr15 58679704 58679728 -27016026 + AT_rich Low_complexity Low_complexity 1 24 0 1746 174 38 35 chr15 58680938 58681278 -27014476 - MER58B DNA MER1_type 0 341 1 1188 240 160 18 chr15 58681368 58681755 -27013999 - LTR33 LTR ERVL -77 444 3 312 161 0 0 chr15 58684145 58684207 -27011547 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 21 82 0 0 chr15 58685905 58685954 -27009800 + AT_rich Low_complexity Low_complexity 1 49 0 2882 254 55 50 chr15 58686988 58687416 -27008338 - L1ME3A LINE L1 -41 6129 5705 2425 82 0 0 chr15 58687416 58687709 -27008045 - AluSc SINE Alu -16 293 1 2882 254 55 50 chr15 58687709 58688271 -27007483 - L1ME3A LINE L1 -465 5705 5130 1636 154 0 85 chr15 58688271 58688590 -27007164 - AluJb SINE Alu -20 292 1 2882 254 55 50 chr15 58688590 58688939 -27006815 - L1ME3A LINE L1 -1040 5130 4784 210 231 0 0 chr15 58690382 58690434 -27005320 - L2 LINE L2 0 3313 3262 277 191 32 32 chr15 58690457 58690520 -27005234 + L2 LINE L2 3238 3300 -13 201 94 0 0 chr15 58690520 58690552 -27005202 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1136 284 85 48 chr15 58690572 58691381 -27004373 - L2 LINE L2 -103 3210 2320 831 249 86 33 chr15 58691483 58691807 -27003947 - MLT1I LTR MaLR 0 409 98 626 155 27 74 chr15 58691899 58692047 -27003707 + MER5A DNA MER1_type 49 189 0 1589 87 0 36 chr15 58692378 58692597 -27003157 + AluY SINE Alu 100 310 -1 2318 100 3 19 chr15 58693162 58693473 -27002281 + AluSx SINE Alu 1 306 -6 274 256 116 0 chr15 58693502 58693588 -27002166 - MIR SINE MIR -117 145 50 2182 183 135 12 chr15 58693588 58694085 -27001669 - MER74A LTR ERVL 0 558 1 379 260 201 10 chr15 58694579 58694783 -27000971 + MIR SINE MIR 14 256 -6 343 301 35 23 chr15 58695994 58696167 -26999587 + L1P LINE L1 4885 5059 -1087 1127 305 70 54 chr15 58696247 58696934 -26998820 + L1MEc LINE L1 37 744 -5652 2119 108 10 14 chr15 58696934 58697231 -26998523 - AluSx SINE Alu -16 296 1 1127 305 70 54 chr15 58697231 58697465 -26998289 + L1MEc LINE L1 744 973 -5423 1414 237 37 33 chr15 58697470 58697981 -26997773 - L1M4 LINE L1 -2781 3365 2853 233 250 16 0 chr15 58698009 58698073 -26997681 - L1MEc LINE L1 -5862 534 470 739 230 10 43 chr15 58698150 58698359 -26997395 - L1MEc LINE L1 -6180 216 15 * 1520 223 68 49 chr15 58698341 58698763 -26996991 + L1MEc LINE L1 1858 2261 -3954 2378 111 0 0 chr15 58698763 58699069 -26996685 + AluSp SINE Alu 1 306 -7 1520 223 68 49 chr15 58699069 58699392 -26996362 + L1MEc LINE L1 2261 2576 -3639 485 279 25 56 chr15 58699400 58699723 -26996031 - L1M4 LINE L1 -3527 2619 2307 246 272 125 54 chr15 58700189 58700413 -26995341 + MLT1K LTR MaLR 116 355 -233 226 195 203 34 chr15 58702212 58702330 -26993424 + L2 LINE L2 2922 3059 -254 428 312 64 69 chr15 58703469 58703873 -26991881 - L2 LINE L2 -33 3239 2838 367 320 90 28 chr15 58704441 58704619 -26991135 + HAL1 LINE L1 6 194 -2313 1221 253 135 31 chr15 58704628 58705169 -26990585 + HAL1 LINE L1 429 1025 -1482 1050 294 126 36 chr15 58705173 58705871 -26989883 + HAL1 LINE L1 1724 2484 -23 1523 249 195 0 chr15 58706307 58706785 -26988969 + MLT2F LTR ERVL 1 571 -92 1519 174 78 35 chr15 58706795 58706934 -26988820 + MLT1B LTR MaLR 31 162 -228 372 43 0 0 chr15 58706934 58706980 -26988774 + (TC)n Simple_repeat Simple_repeat 1 46 0 1519 174 78 35 chr15 58706980 58707185 -26988569 + MLT1B LTR MaLR 162 390 0 302 0 0 26 chr15 58707219 58707258 -26988496 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2094 125 0 0 chr15 58707266 58707594 -26988160 - AluSc SINE Alu 0 328 1 1863 186 87 36 chr15 58707657 58708131 -26987623 + MLT1D LTR MaLR 8 505 0 558 195 160 18 chr15 58708228 58708397 -26987357 + L1MC4 LINE L1 7068 7260 -782 1269 272 42 40 chr15 58708421 58708943 -26986811 + L1MC4 LINE L1 7354 7876 -166 280 278 155 15 chr15 58708984 58709234 -26986520 + L1M4 LINE L1 5277 5577 -607 2206 119 0 0 chr15 58709419 58709712 -26986042 + AluSg SINE Alu 1 293 -17 21 36 0 0 chr15 58709960 58709988 -26985766 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr15 58711259 58711282 -26984472 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 322 262 128 18 chr15 58711700 58711864 -26983890 + MIR SINE MIR 1 182 -80 217 308 75 31 chr15 58711874 58712033 -26983721 + L3 LINE CR1 987 1152 -425 1951 189 39 84 chr15 58712045 58712264 -26983490 - MLT2B1 LTR ERVL 0 520 292 1804 159 55 3 chr15 58712264 58712553 -26983201 + AluJb SINE Alu 1 304 -8 1951 189 39 84 chr15 58712553 58712878 -26982876 - MLT2B1 LTR ERVL -228 292 1 349 349 40 7 chr15 58712967 58713119 -26982635 + L3 LINE CR1 1346 1502 -75 2106 116 164 13 chr15 58713563 58713935 -26981819 - MSTA LTR MaLR 0 428 1 197 356 89 22 chr15 58713997 58714132 -26981622 + L2 LINE L2 3104 3247 -25 304 392 26 0 chr15 58714247 58714400 -26981354 - L2 LINE L2 0 3272 3116 224 351 21 0 chr15 58714427 58714521 -26981233 + L2 LINE L2 3141 3236 -36 257 348 11 0 chr15 58714617 58714709 -26981045 - L3 LINE CR1 -6 1571 1479 187 286 227 19 chr15 58715727 58715881 -26979873 + MIR SINE MIR 47 232 -30 199 274 41 0 chr15 58716455 58716528 -26979226 + MIR SINE MIR 117 192 -70 549 215 85 45 chr15 58716536 58716713 -26979041 + L2 LINE L2 3130 3313 0 250 128 0 0 chr15 58716781 58716820 -26978934 - 5S rRNA rRNA -82 39 1 355 274 28 0 chr15 58717381 58717487 -26978267 + L2 LINE L2 3164 3272 0 460 253 13 13 chr15 58718049 58718359 -26977395 + (CA)n Simple_repeat Simple_repeat 1 310 0 208 258 0 45 chr15 58718546 58718612 -26977142 + (CCCCG)n Simple_repeat Simple_repeat 2 64 0 266 329 35 28 chr15 58718771 58718914 -26976840 + MIR3 SINE MIR 2 145 -63 613 271 54 18 chr15 58719443 58719664 -26976090 + MIR SINE MIR 33 261 -1 271 211 200 0 chr15 58720248 58720343 -26975411 - MIR SINE MIR -36 226 113 207 0 0 0 chr15 58720935 58720958 -26974796 + (CAA)n Simple_repeat Simple_repeat 2 24 0 478 149 0 0 chr15 58721167 58721234 -26974520 + L1PA12 LINE L1 338 404 -7177 1409 266 121 28 chr15 58721257 58721727 -26974027 - MLT1F LTR MaLR -28 514 1 680 299 62 42 chr15 58721751 58722135 -26973619 + L1MEc LINE L1 1420 1811 -4585 23398 37 1 2 chr15 58722197 58727278 -26968476 + L1P LINE L1 1 5201 -945 198 0 0 0 chr15 58727998 58728020 -26967734 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 226 269 119 36 chr15 58728025 58728218 -26967536 - L1M4 LINE L1 -1908 4238 4030 558 243 191 11 chr15 58728302 58728491 -26967263 - MIR SINE MIR -27 235 13 3134 165 33 2 chr15 58728987 58729526 -26966228 + L1MB3 LINE L1 5628 6183 0 726 277 120 34 chr15 58729748 58730186 -26965568 - L1P4 LINE L1 -339 5782 5255 2122 104 0 0 chr15 58730186 58730466 -26965288 - AluSx SINE Alu 0 312 33 726 277 120 34 chr15 58730466 58730705 -26965049 - L1P4 LINE L1 -866 5255 5038 210 191 0 0 chr15 58731009 58731056 -26964698 + (CA)n Simple_repeat Simple_repeat 2 48 0 550 281 51 66 chr15 58731329 58731585 -26964169 - MIR SINE MIR -9 253 2 2355 87 0 3 chr15 58732362 58732660 -26963094 - AluSc SINE Alu -12 297 1 24 0 0 0 chr15 58732689 58732713 -26963041 + AT_rich Low_complexity Low_complexity 1 24 0 1639 186 73 24 chr15 58733359 58733731 -26962023 + MLT1B LTR MaLR 1 390 0 373 283 119 18 chr15 58733731 58733931 -26961823 - MIR SINE MIR -21 241 8 209 59 59 0 chr15 58734242 58734276 -26961478 + CT-rich Low_complexity Low_complexity 3 38 0 307 291 154 0 chr15 58734321 58734431 -26961323 + L2 LINE L2 3138 3264 -8 340 306 18 9 chr15 58734637 58734748 -26961006 + MIR3 SINE MIR 93 204 -4 2146 129 3 0 chr15 58735968 58736270 -26959484 - AluSq SINE Alu -10 303 1 500 273 41 36 chr15 58736281 58736475 -26959279 + MER102a DNA MER1_type 127 321 -9 345 333 70 13 chr15 58736563 58736719 -26959035 - L2 LINE L2 -1 3271 3107 276 309 87 16 chr15 58737595 58737721 -26958033 - MIR SINE MIR -41 221 87 221 330 0 33 chr15 58738644 58738735 -26957019 - L2 LINE L2 -181 3091 3004 194 282 115 64 chr15 58739100 58739256 -26956498 + MIR SINE MIR 85 248 -14 1877 191 25 8 chr15 58740547 58740903 -26954851 + MLT1A1 LTR MaLR 1 362 -3 729 310 118 20 chr15 58740951 58741358 -26954396 - LTR16A LTR ERVL -1 449 3 1001 318 58 16 chr15 58741531 58742164 -26953590 - ERVL LTR ERVL -438 5326 4667 3581 304 55 19 chr15 58742275 58743897 -26951857 - ERVL LTR ERVL -2006 2990 1200 582 298 57 19 chr15 58743908 58744170 -26951584 - LTR16A LTR ERVL -119 331 60 439 313 79 19 chr15 58744510 58744826 -26950928 - L2 LINE L2 -545 2769 2435 299 322 22 0 chr15 58745275 58745365 -26950389 + MER115 DNA AcHobo 18 109 -584 261 278 0 0 chr15 58745599 58745653 -26950101 + Zaphod DNA AcHobo 3978 4031 0 1116 197 4 64 chr15 58745661 58745894 -26949860 - MER20 DNA MER1_type 0 219 1 271 283 141 0 chr15 58746988 58747087 -26948667 + L2 LINE L2 3156 3268 -4 599 300 82 13 chr15 58747262 58747495 -26948259 - MIR SINE MIR -12 250 2 2122 91 49 0 chr15 58747988 58748273 -26947481 + AluSg SINE Alu 2 300 -10 421 332 77 10 chr15 58748546 58748754 -26947000 - MIR SINE MIR -12 250 29 207 273 71 65 chr15 58748825 58748979 -26946775 + MIR SINE MIR 84 238 -24 1085 201 59 0 chr15 58750219 58750423 -26945331 - MER20 DNA MER1_type 0 219 4 1484 268 75 15 chr15 58751203 58751602 -26944152 + LTR16C LTR ERVL 69 491 0 28 0 0 0 chr15 58752228 58752256 -26943498 + AT_rich Low_complexity Low_complexity 1 28 0 5095 167 28 26 chr15 58752260 58753083 -26942671 - L1MA9 LINE L1 -42 6270 5443 2321 89 7 0 chr15 58753083 58753374 -26942380 - AluSg SINE Alu -17 293 1 5095 167 28 26 chr15 58753374 58753736 -26942018 - L1MA9 LINE L1 -869 5443 5083 455 222 14 132 chr15 58754094 58754306 -26941448 - AluJo SINE Alu -125 187 1 4508 144 10 1 chr15 58754778 58755460 -26940294 - L1PB1 LINE L1 0 6151 5464 262 224 35 82 chr15 58755687 58755772 -26939982 - MIR3 SINE MIR -15 193 113 274 309 87 16 chr15 58757163 58757289 -26938465 + MIR SINE MIR 87 221 -41 345 333 70 13 chr15 58758165 58758321 -26937433 + L2 LINE L2 3107 3271 -1 500 273 41 36 chr15 58758409 58758603 -26937151 - MER102b DNA MER1_type -9 332 138 2146 129 3 0 chr15 58758614 58758916 -26936838 + AluSq SINE Alu 1 303 -10 340 306 18 9 chr15 58760136 58760247 -26935507 - MIR3 SINE MIR -4 204 93 307 291 154 0 chr15 58760453 58760563 -26935191 - L2 LINE L2 -8 3264 3138 209 59 59 0 chr15 58760608 58760642 -26935112 + GA-rich Low_complexity Low_complexity 3 38 0 421 268 143 17 chr15 58760953 58761153 -26934601 + MIR SINE MIR 8 241 -21 1639 186 73 24 chr15 58761153 58761525 -26934229 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr15 58762171 58762195 -26933559 + AT_rich Low_complexity Low_complexity 1 24 0 2348 90 0 3 chr15 58762224 58762523 -26933231 + AluSc SINE Alu 1 298 -11 547 281 51 66 chr15 58763436 58763692 -26932062 + MIR SINE MIR 2 253 -9 217 244 0 0 chr15 58763962 58764007 -26931747 + (TG)n Simple_repeat Simple_repeat 2 46 0 725 279 107 36 chr15 58764311 58764550 -26931204 + L1ME LINE L1 5038 5259 -862 2076 111 0 0 chr15 58764550 58764830 -26930924 + AluSx SINE Alu 33 312 0 725 279 107 36 chr15 58764830 58765267 -26930487 + L1ME LINE L1 5259 5782 -339 3109 167 33 2 chr15 58765489 58766028 -26929726 - L1MB3 LINE L1 0 6183 5628 573 238 191 11 chr15 58766524 58766713 -26929041 + MIR SINE MIR 13 235 -27 226 269 119 36 chr15 58766797 58766990 -26928764 + L1M4 LINE L1 4030 4238 -1908 198 0 0 0 chr15 58766995 58767017 -26928737 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 8143 31 4 0 chr15 58767737 58768697 -26927057 - L1P LINE L1 -945 5201 4238 240 279 114 31 chr15 58769215 58769392 -26926362 - MIR SINE MIR -30 232 16 1195 201 0 18 chr15 58769402 58769621 -26926133 - MER58A DNA MER1_type -9 215 1 524 303 22 6 chr15 58771279 58771457 -26924297 + Charlie8 DNA MER1_type 84 264 -2153 252 256 219 15 chr15 58771711 58771848 -26923906 + MIR3 SINE MIR 19 183 -25 310 339 92 32 chr15 58772270 58772639 -26923115 + MLT1L LTR MaLR 192 582 -33 446 199 41 64 chr15 58773001 58773169 -26922585 - MER104 DNA Tc2 -3 177 14 1578 205 92 5 chr15 58773169 58773590 -26922164 + MER89 LTR ERV1 1 559 0 3091 145 46 15 chr15 58774244 58774463 -26921291 + MER34 LTR ERV1 4 215 -327 2786 151 19 2 chr15 58774463 58774888 -26920866 - MSTB1 LTR MaLR 0 432 1 3091 145 46 15 chr15 58774888 58775191 -26920563 + MER34 LTR ERV1 215 542 0 501 234 209 67 chr15 58776169 58776451 -26919303 - L1MC4a LINE L1 -1880 5928 5607 228 271 0 0 chr15 58776452 58776522 -26919232 + MIR SINE MIR 137 206 -56 695 220 65 9 chr15 58778991 58779223 -26916531 - HAL1b LINE L1 -205 1143 899 938 285 101 20 chr15 58779299 58779518 -26916236 - L2 LINE L2 -145 3168 2968 2524 150 31 2 chr15 58779518 58779937 -26915817 - MSTB1 LTR MaLR -1 431 1 938 285 101 20 chr15 58779937 58780236 -26915518 - L2 LINE L2 -345 2968 2617 1736 221 49 15 chr15 58780299 58780710 -26915044 - MLT1C LTR MaLR -9 458 34 3466 289 117 24 chr15 58780774 58782645 -26913109 - L2 LINE L2 -825 2489 444 2134 120 11 0 chr15 58784696 58784980 -26910774 - AluSx SINE Alu -25 287 1 3940 89 15 0 chr15 58785411 58785950 -26909804 - L1PA13 LINE L1 -5 6158 5612 435 270 139 69 chr15 58786419 58786823 -26908931 + LTR67 LTR ERVL 126 557 0 464 296 13 31 chr15 58786990 58787190 -26908564 + MIR3 SINE MIR 4 200 -8 2011 144 20 0 chr15 58787506 58787811 -26907943 + AluSx SINE Alu 1 311 -1 351 261 11 0 chr15 58788018 58788106 -26907648 + L2 LINE L2 3221 3309 -4 201 333 0 0 chr15 58788155 58788215 -26907539 + L2 LINE L2 3205 3264 -8 730 311 49 4 chr15 58788936 58789180 -26906574 - MIR SINE MIR -6 256 2 282 267 17 69 chr15 58789191 58789307 -26906447 - L2 LINE L2 -88 3184 3075 295 132 0 0 chr15 58789635 58789688 -26906066 - L1MD1 LINE L1 0 6242 6190 * 756 280 50 30 chr15 58789656 58789985 -26905769 - L1ME3 LINE L1 -300 5862 5517 2280 88 17 3 chr15 58790276 58790570 -26905184 - AluSq SINE Alu -15 298 1 208 263 26 26 chr15 58791419 58791495 -26904259 + MIR SINE MIR 30 105 -103 609 240 68 14 chr15 58791528 58791749 -26904005 + MER5C DNA MER1_type 25 257 -67 267 252 54 0 chr15 58792407 58792518 -26903236 + MER5C DNA MER1_type 208 324 0 401 325 75 42 chr15 58792550 58793194 -26902560 - L1MEd LINE L1 -837 1653 898 337 303 49 7 chr15 58794496 58794638 -26901116 + MIR3 SINE MIR 54 201 -7 5977 193 29 14 chr15 58799627 58800719 -26895035 - L1PA13 LINE L1 -5021 1766 658 269 208 0 0 chr15 58800717 58800765 -26894989 + L1PB1 LINE L1 598 645 -6142 * 297 0 0 0 chr15 58803248 58803281 -26892473 + (TG)n Simple_repeat Simple_repeat 2 34 0 13327 182 12 8 chr15 58803728 58806958 -26888796 + L1PB1 LINE L1 3244 6482 -320 2202 261 55 60 chr15 58806939 58807742 -26888012 + L1M4 LINE L1 3837 4632 -1514 * 375 105 0 0 chr15 58807742 58807799 -26887955 + (TG)n Simple_repeat Simple_repeat 2 58 0 2202 261 55 60 chr15 58807799 58808253 -26887501 + L1M4 LINE L1 4632 5087 -1059 1001 142 22 33 chr15 58808278 58808461 -26887293 + FRAM SINE Alu 1 176 0 255 263 0 83 chr15 58808471 58808530 -26887224 + L1M4 LINE L1 5106 5150 -996 2130 94 10 34 chr15 58808530 58808828 -26886926 + AluSg SINE Alu 3 293 -17 255 263 0 83 chr15 58808828 58808901 -26886853 + L1M4 LINE L1 5150 5227 -919 1060 159 20 15 chr15 58809065 58809260 -26886494 - L1MB2 LINE L1 0 6171 5976 2106 148 104 22 chr15 58809486 58809898 -26885856 + MER52C LTR ERV1 1 446 -832 363 225 0 0 chr15 58809898 58809969 -26885785 + L1PA12 LINE L1 552 622 -6959 2669 187 80 2 chr15 58809987 58810501 -26885253 - L1PA12 LINE L1 -7026 555 2 892 145 0 0 chr15 58810509 58810633 -26885121 - FLAM_C SINE Alu -17 126 3 2537 231 18 16 chr15 58811467 58812012 -26883742 + MER77 LTR ERV1 54 599 -6 198 258 227 0 chr15 58813371 58813437 -26882317 - MIR SINE MIR -66 142 62 2281 254 95 84 chr15 58814232 58815023 -26880731 + Charlie2a DNA MER1_type 45 826 -2036 1847 81 17 0 chr15 58815023 58815259 -26880495 - AluSg SINE Alu -28 282 43 2281 254 95 84 chr15 58815259 58816683 -26879071 + Charlie2a DNA MER1_type 826 2283 -579 658 285 124 28 chr15 58816784 58817107 -26878647 + MLT1J2 LTR MaLR 97 450 0 924 210 49 57 chr15 58817115 58817429 -26878325 + Charlie2a DNA MER1_type 2284 2596 -266 2563 46 3 0 chr15 58817429 58817733 -26878021 + AluY SINE Alu 1 305 -6 924 210 49 57 chr15 58817733 58817784 -26877970 + Charlie2a DNA MER1_type 2596 2646 -216 180 0 0 0 chr15 58818057 58818077 -26877677 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 291 54 0 0 chr15 58818076 58818113 -26877641 + (CA)n Simple_repeat Simple_repeat 1 37 0 429 348 50 5 chr15 58818632 58818853 -26876901 + L3 LINE CR1 901 1131 -446 1040 9 0 0 chr15 58819162 58819277 -26876477 + AluY SINE Alu 197 311 0 2496 134 57 12 chr15 58819537 58819940 -26875814 + MSTA LTR MaLR 5 425 -3 5461 121 43 17 chr15 58820890 58821768 -26873986 + MER4D LTR ERV1 3 903 0 2555 129 3 0 chr15 58822594 58822957 -26872797 + THE1B LTR MaLR 1 364 0 1039 212 107 132 chr15 58823208 58823290 -26872464 + LTR8A LTR ERV1 1 83 -644 198 71 0 0 chr15 58823290 58823318 -26872436 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1039 212 107 132 chr15 58823318 58823980 -26871774 + LTR8A LTR ERV1 83 727 0 353 137 0 0 chr15 58824778 58824829 -26870925 - LTR33A LTR ERVL -2 521 471 1301 105 6 0 chr15 58825104 58825275 -26870479 + AluSg/x SINE Alu 121 292 -20 719 157 179 0 chr15 58825275 58825415 -26870339 + LTR36 LTR ERV1 112 276 -335 1280 160 34 0 chr15 58825531 58825768 -26869986 + MER90 LTR ERV1 1 285 -329 2177 135 111 95 chr15 58825768 58826265 -26869489 - LTR36 LTR ERV1 0 611 107 754 211 87 0 chr15 58826265 58826426 -26869328 - FAM SINE Alu 0 175 1 1288 109 5 36 chr15 58826426 58826453 -26869301 - AluSg/x SINE Alu -15 297 117 271 235 123 16 chr15 58826618 58826718 -26869036 + MER5A DNA MER1_type 10 123 -66 267 328 50 17 chr15 58826890 58827009 -26868745 + L3 LINE CR1 1230 1352 -225 183 245 132 0 chr15 58827056 58827109 -26868645 - L2 LINE L2 -351 2962 2903 884 236 53 74 chr15 58827165 58827542 -26868212 + L2 LINE L2 2943 3311 -2 222 343 39 0 chr15 58827551 58827653 -26868101 - MIR SINE MIR -70 192 87 847 261 95 25 chr15 58827866 58828234 -26867520 - L1ME4a LINE L1 -238 5883 5490 203 175 0 0 chr15 58828562 58828602 -26867152 + T-rich Low_complexity Low_complexity 1 40 0 337 222 77 34 chr15 58828849 58828966 -26866788 - L1ME4a LINE L1 -1235 4911 4790 2901 183 36 2 chr15 58829480 58829982 -26865772 - LTR53 LTR ERVL 0 519 1 291 298 74 41 chr15 58830363 58830484 -26865270 - L1MC/D LINE L1 -734 5593 5469 652 298 36 24 chr15 58830563 58830815 -26864939 + MIR SINE MIR 4 258 -4 833 269 95 30 chr15 58830830 58831707 -26864047 - L1MC/D LINE L1 -2862 3267 2317 527 224 117 144 chr15 58831718 58831982 -26863772 - MIR SINE MIR -4 258 2 242 231 28 110 chr15 58832016 58832071 -26863683 - L1MC/D LINE L1 -3840 2289 2231 2425 81 3 0 chr15 58832071 58832368 -26863386 - AluSp SINE Alu -15 298 1 242 231 28 110 chr15 58832368 58832494 -26863260 - L1MC/D LINE L1 -3898 2231 2123 21 0 0 0 chr15 58832714 58832735 -26863019 + AT_rich Low_complexity Low_complexity 1 21 0 338 346 139 5 chr15 58832868 58833180 -26862574 - L1MC/D LINE L1 -863 1627 1368 1729 264 90 74 chr15 58833209 58833414 -26862340 - L1MC/D LINE L1 -4867 1252 1052 2100 133 0 3 chr15 58833414 58833708 -26862046 - AluSx SINE Alu -19 293 1 1729 264 90 74 chr15 58833708 58834731 -26861023 - L1MC/D LINE L1 -5067 1052 4 940 194 84 46 chr15 58835870 58836133 -26859621 - MLT1A1 LTR MaLR 0 365 93 325 214 12 71 chr15 58836133 58836217 -26859537 + MER5B DNA MER1_type 31 109 -69 331 197 197 0 chr15 58836217 58836293 -26859461 - MLT1A1 LTR MaLR -274 91 1 555 287 25 0 chr15 58836613 58836770 -26858984 + MIR3 SINE MIR 24 184 -24 373 214 86 64 chr15 58837477 58837617 -26858137 - MIR SINE MIR -112 150 8 400 225 94 51 chr15 58837700 58837838 -26857916 - MER5B DNA MER1_type -34 144 1 363 289 16 0 chr15 58838528 58838656 -26857098 + (TG)n Simple_repeat Simple_repeat 1 130 0 278 243 7 0 chr15 58838669 58838809 -26856945 + (TG)n Simple_repeat Simple_repeat 1 141 0 211 293 0 0 chr15 58838821 58838896 -26856858 + (TG)n Simple_repeat Simple_repeat 2 76 0 186 179 0 0 chr15 58838935 58838991 -26856763 + (TG)n Simple_repeat Simple_repeat 1 56 0 411 206 0 0 chr15 58839050 58839215 -26856539 + (TG)n Simple_repeat Simple_repeat 1 165 0 262 282 0 0 chr15 58839566 58839637 -26856117 - MIR3 SINE MIR -14 194 124 802 323 69 48 chr15 58839870 58840331 -26855423 - L2 LINE L2 -1 3312 2842 415 202 124 0 chr15 58840974 58841063 -26854691 - MER81 DNA DNA -5 109 10 639 200 7 40 chr15 58841065 58841178 -26854576 + MLT2B1 LTR ERVL 2 111 -409 2247 102 0 0 chr15 58841178 58841490 -26854264 + AluSx SINE Alu 2 313 0 639 200 7 40 chr15 58841490 58841525 -26854229 + MLT2B1 LTR ERVL 111 146 -374 5014 102 10 1 chr15 58842099 58842773 -26852981 - L1PB1 LINE L1 -8 6143 5464 436 236 24 55 chr15 58843000 58843127 -26852627 - MIR3 SINE MIR -15 193 71 227 245 123 97 chr15 58843240 58843395 -26852359 - MIR3 SINE MIR -42 166 8 2071 166 55 30 chr15 58843555 58844090 -26851664 + MLT2A2 LTR ERVL 1 547 -7 282 225 0 0 chr15 58844099 58844179 -26851575 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 883 279 96 34 chr15 58844192 58844662 -26851092 - L2 LINE L2 -9 3304 2806 24 32 0 0 chr15 58844775 58844806 -26850948 + AT_rich Low_complexity Low_complexity 1 31 0 1298 140 8 70 chr15 58844940 58844974 -26850780 + L1M2 LINE L1 5383 5418 -756 624 203 35 0 chr15 58844974 58845117 -26850637 - L1MA8 LINE L1 -7 6284 6137 1298 140 8 70 chr15 58845117 58845181 -26850573 + L1M2 LINE L1 5418 5484 -690 1608 155 13 33 chr15 58845181 58845484 -26850270 + AluJo SINE Alu 1 297 -15 1298 140 8 70 chr15 58845484 58845659 -26850095 + L1M2 LINE L1 5484 5649 -525 510 288 43 101 chr15 58845662 58846058 -26849696 - L1MC4a LINE L1 -1877 5931 5559 482 172 69 0 chr15 58846224 58846311 -26849443 + L1MC1 LINE L1 6240 6332 -1 2017 267 51 11 chr15 58847032 58847124 -26848630 + MLT1G LTR MaLR 10 97 -493 1511 191 25 28 chr15 58847124 58847448 -26848306 - MER33 DNA MER1_type 0 324 2 2017 267 51 11 chr15 58847448 58847906 -26847848 + MLT1G LTR MaLR 97 582 -8 2328 97 0 3 chr15 58848644 58848952 -26846802 + AluSq SINE Alu 1 307 -6 292 361 63 12 chr15 58850226 58850481 -26845273 - LTR16C LTR ERVL 0 491 224 2090 121 0 29 chr15 58850730 58851043 -26844711 + AluSg1 SINE Alu 5 308 -1 1924 160 6 13 chr15 58851165 58851478 -26844276 + AluSx SINE Alu 1 311 -1 463 287 52 21 chr15 58851738 58851966 -26843788 - HERVL LTR ERVL -378 5146 4872 2740 329 30 64 chr15 58852348 58855131 -26840623 - HERVL LTR ERVL -1142 4512 1548 673 346 58 48 chr15 58855156 58855841 -26839913 - HERVL LTR ERVL -3596 1400 709 1210 230 0 9 chr15 58855849 58856075 -26839679 + MER58A DNA MER1_type 1 224 0 220 267 22 78 chr15 58856174 58856264 -26839490 + MIR SINE MIR 22 106 -156 283 277 143 40 chr15 58856702 58856926 -26838828 - L2 LINE L2 -1053 2261 2015 435 276 87 53 chr15 58857098 58857420 -26838334 + L1ME4a LINE L1 5636 5968 -153 1631 177 74 3 chr15 58857554 58857837 -26837917 + AluJb SINE Alu 1 303 -9 33 43 0 0 chr15 58857845 58857892 -26837862 + AT_rich Low_complexity Low_complexity 1 47 0 331 352 84 17 chr15 58858085 58858264 -26837490 + MIR3 SINE MIR 16 206 -2 2326 91 17 0 chr15 58859582 58859879 -26835875 - AluSx SINE Alu -10 302 1 183 232 61 61 chr15 58860123 58860205 -26835549 + MIR SINE MIR 180 261 -1 275 281 74 8 chr15 58860713 58860834 -26834920 + L3 LINE CR1 1192 1320 -257 1612 180 3 50 chr15 58861192 58861514 -26834240 - AluJo SINE Alu -5 307 1 3907 143 10 2 chr15 58861751 58862337 -26833417 + LTR39 LTR ERV1 47 637 -146 920 196 98 0 chr15 58862379 58862583 -26833171 - MER90 LTR ERV1 0 614 391 720 224 7 7 chr15 58862590 58862733 -26833021 + LTR39 LTR ERV1 641 783 0 1463 83 32 18 chr15 58863359 58863576 -26832178 + LTR39 LTR ERV1 1 220 -563 2080 170 47 5 chr15 58863576 58863959 -26831795 - MER83 LTR ERV1 0 448 50 858 82 0 0 chr15 58863958 58864068 -26831686 - MER83 LTR ERV1 -338 110 1 * 2281 133 3 20 chr15 58864069 58864189 -26831565 + LTR39 LTR ERV1 219 340 -443 3477 73 62 2 chr15 58864189 58864628 -26831126 + MER4C LTR ERV1 1 465 0 2281 133 3 20 chr15 58864628 58864852 -26830902 + LTR39 LTR ERV1 340 557 -226 3753 168 40 11 chr15 58864860 58865602 -26830152 - LTR1B LTR ERV1 -2 783 1 1926 137 30 20 chr15 58865602 58866040 -26829714 + MER61D LTR ERV1 3 501 0 1089 196 67 5 chr15 58866040 58866255 -26829499 + LTR39 LTR ERV1 555 783 0 429 294 122 84 chr15 58866420 58867113 -26828641 - L1M4 LINE L1 -758 5388 4664 2777 85 19 22 chr15 58867113 58867478 -26828276 - THE1B LTR MaLR 0 364 1 429 294 122 84 chr15 58867478 58867523 -26828231 - L1M4 LINE L1 -1482 4664 4622 1390 171 16 79 chr15 58867530 58867835 -26827919 - AluJb SINE Alu -22 290 5 237 319 26 0 chr15 58867875 58867988 -26827766 - L1M4 LINE L1 -1525 4621 4506 23 0 0 0 chr15 58868286 58868309 -26827445 + AT_rich Low_complexity Low_complexity 1 23 0 2185 109 115 3 chr15 58868309 58868639 -26827115 - L1PB1 LINE L1 0 6151 5785 469 269 47 7 chr15 58868678 58868827 -26826927 - MIR SINE MIR -56 206 52 6069 165 4 4 chr15 58869124 58870174 -26825580 - L1P LINE L1 -1635 4511 3462 6780 87 12 5 chr15 58870182 58870396 -26825358 + L1PA13 LINE L1 4826 5037 -1126 2583 106 17 14 chr15 58870396 58870756 -26824998 - THE1B LTR MaLR -3 361 1 6780 87 12 5 chr15 58870756 58871876 -26823878 + L1PA13 LINE L1 5037 6161 -2 585 311 84 3 chr15 58872017 58872316 -26823438 + L2 LINE L2 1635 1957 -1357 1099 251 101 41 chr15 58872317 58872752 -26823002 + MLT1C LTR MaLR 6 466 -1 1416 258 133 32 chr15 58872762 58873448 -26822306 + L2 LINE L2 1960 2714 -600 1078 272 139 6 chr15 58873458 58873818 -26821936 + L1MD2 LINE L1 5693 6100 -259 812 302 152 25 chr15 58873831 58874287 -26821467 + L2 LINE L2 2791 3303 -10 1147 191 48 5 chr15 58875047 58875257 -26820497 - MER20 DNA MER1_type 0 219 1 1771 173 7 13 chr15 58875808 58876114 -26819640 - AluJb SINE Alu -7 305 2 240 208 0 0 chr15 58876195 58876243 -26819511 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 749 214 11 39 chr15 58876443 58876621 -26819133 - MLT1F LTR MaLR 0 542 370 1833 163 0 3 chr15 58876786 58877080 -26818674 + AluJb SINE Alu 1 293 -19 205 306 52 52 chr15 58877345 58877456 -26818298 + L2 LINE L2 3139 3290 -23 3741 137 43 8 chr15 58878203 58879383 -26816371 + L1PBa LINE L1 2318 3536 -3326 2547 108 0 19 chr15 58929383 58929744 -26766010 - L1PA15 LINE L1 -111 6054 5701 214 208 42 0 chr15 58930107 58930155 -26765599 + MER5B DNA MER1_type 125 174 -4 1210 264 19 6 chr15 58930237 58930551 -26765203 + MER58B DNA MER1_type 2 319 -22 340 234 13 13 chr15 58930945 58931022 -26764732 - HERVL40 LTR ERVL -2104 3426 3350 232 189 0 19 chr15 58931570 58931623 -26764131 + GA-rich Low_complexity Low_complexity 2 53 0 492 264 181 0 chr15 58932625 58932769 -26762985 - MER5A DNA MER1_type -6 183 14 408 322 190 19 chr15 58933718 58933839 -26761915 + MIR SINE MIR 13 112 -150 3701 87 0 4 chr15 58933839 58934300 -26761454 - LTR46 LTR ERV1 -1 459 1 408 322 190 19 chr15 58934300 58934389 -26761365 + MIR SINE MIR 112 259 -3 674 289 45 8 chr15 58934464 58934710 -26761044 - MLT1L LTR MaLR -4 611 357 212 324 135 9 chr15 58934911 58935022 -26760732 - MER5A DNA MER1_type -30 159 35 * 250 323 21 21 chr15 58934942 58935038 -26760716 + MER5A DNA MER1_type 86 181 -8 218 252 146 10 chr15 58936796 58936899 -26758855 + MIR SINE MIR 20 136 -72 2179 135 3 0 chr15 58937562 58937873 -26757881 - AluSx SINE Alu 0 312 1 262 242 0 33 chr15 58937915 58938006 -26757748 + MIR SINE MIR 146 233 -29 251 270 140 30 chr15 58938135 58938235 -26757519 + L2 LINE L2 2272 2382 -932 645 245 150 21 chr15 58938286 58938519 -26757235 + Charlie8 DNA MER1_type 7 269 -2148 250 306 37 37 chr15 58938914 58939048 -26756706 + HAL1b LINE L1 253 386 -962 1936 169 46 25 chr15 58939155 58939521 -26756233 - MLT1A2 LTR MaLR 0 374 1 530 238 48 0 chr15 58939644 58939791 -26755963 + MER103 DNA DNA 4 157 -9 272 333 47 25 chr15 58940203 58940563 -26755191 + L1M4 LINE L1 4340 4707 -1439 1947 222 82 16 chr15 58940606 58941092 -26754662 - LTR40a LTR ERVL -1 518 1 1430 220 10 0 chr15 58941094 58941431 -26754323 - HERVL40 LTR ERVL -2 5528 2791 411 359 8 12 chr15 58941293 58941544 -26754210 - MER89-int LTR ERV1 -281 6520 6271 * 7109 232 65 22 chr15 58941548 58943103 -26752651 - HERVL40 LTR ERVL -1205 4325 2838 724 156 37 7 chr15 58943103 58943238 -26752516 + L1MD1 LINE L1 6104 6242 0 2142 111 27 60 chr15 58943238 58943603 -26752151 + L1MA4 LINE L1 5937 6294 -6 7109 232 65 22 chr15 58943603 58943776 -26751978 - HERVL40 LTR ERVL -2691 2839 2522 773 278 83 28 chr15 58943775 58944425 -26751329 - HERVL40 LTR ERVL -3919 1611 918 * 324 186 0 0 chr15 58944654 58944713 -26751041 - HERVL40 LTR ERVL -5455 75 17 1568 250 21 61 chr15 58944717 58945193 -26750561 - LTR40a LTR ERVL 0 519 63 358 153 0 35 chr15 58945377 58945462 -26750292 + CT-rich Low_complexity Low_complexity 4 85 0 21 57 0 0 chr15 58946041 58946076 -26749678 + AT_rich Low_complexity Low_complexity 1 35 0 430 207 92 119 chr15 58946225 58946527 -26749227 - L1MCc LINE L1 -4163 1813 1337 1966 107 3 45 chr15 58946527 58946835 -26748919 - AluSc SINE Alu -14 295 1 430 207 92 119 chr15 58946835 58946891 -26748863 - L1MCc LINE L1 -4639 1337 1281 257 319 102 25 chr15 58947546 58947703 -26748051 + MER5A DNA MER1_type 21 189 0 238 327 11 17 chr15 58948321 58948424 -26747330 + CT-rich Low_complexity Low_complexity 2 179 0 550 255 102 66 chr15 58948664 58949198 -26746556 + L1ME4a LINE L1 5284 5861 -260 23 0 0 0 chr15 58949203 58949226 -26746528 + AT_rich Low_complexity Low_complexity 1 23 0 317 268 71 36 chr15 58949392 58949504 -26746250 + MIR SINE MIR 25 140 -68 283 242 31 62 chr15 58951206 58951334 -26744420 - MIR SINE MIR -116 146 23 1987 205 212 29 chr15 58951511 58952068 -26743686 - MLT2F LTR ERVL 0 663 5 1220 246 88 47 chr15 58952073 58952546 -26743208 - ERVL-F LTR ERVL -9 5755 5219 450 194 17 25 chr15 58952550 58952729 -26743025 - MER58A DNA MER1_type 0 224 1 1676 252 15 5 chr15 58952735 58953140 -26742614 - ERVL-F LTR ERVL -548 5216 4808 1491 303 140 15 chr15 58953203 58953991 -26741763 - L2 LINE L2 -1 3271 2285 4466 152 35 3 chr15 58953991 58954730 -26741024 - L1MB3 LINE L1 -2 6181 5419 1491 303 140 15 chr15 58954730 58955126 -26740628 - L2 LINE L2 -987 2285 1940 795 245 72 102 chr15 58955497 58956024 -26739730 - MLT1J LTR MaLR 0 511 1 2378 102 0 0 chr15 58956084 58956389 -26739365 + AluSx SINE Alu 8 312 0 218 252 146 10 chr15 58957052 58957155 -26738599 - MIR SINE MIR -72 136 20 250 323 21 21 chr15 58958913 58959009 -26736745 - MER5A DNA MER1_type -8 181 86 212 324 135 9 chr15 58958929 58959040 -26736714 + MER5A DNA MER1_type 35 159 -30 * 674 289 45 8 chr15 58959241 58959487 -26736267 + MLT1L LTR MaLR 357 611 -4 408 322 190 19 chr15 58959562 58959651 -26736103 - MIR SINE MIR -3 259 187 3701 87 0 4 chr15 58959651 58960112 -26735642 + LTR46 LTR ERV1 1 459 -1 408 322 190 19 chr15 58960112 58960233 -26735521 - MIR SINE MIR -75 187 13 492 264 181 0 chr15 58961182 58961326 -26734428 + MER5A DNA MER1_type 14 183 -6 232 189 0 19 chr15 58962328 58962381 -26733373 + CT-rich Low_complexity Low_complexity 2 53 0 340 234 13 13 chr15 58962929 58963006 -26732748 + HERVL40 LTR ERVL 3350 3426 -2104 1210 264 19 6 chr15 58963400 58963714 -26732040 - MER58B DNA MER1_type -22 319 2 232 200 40 0 chr15 58963795 58963845 -26731909 - MER5B DNA MER1_type -2 176 125 3075 105 13 59 chr15 58964209 58964686 -26731068 + L1PA15 LINE L1 5703 6157 -8 906 181 199 97 chr15 58964832 58965163 -26730591 + MSTD LTR MaLR 1 396 0 204 125 0 0 chr15 58965549 58965581 -26730173 + (GAA)n Simple_repeat Simple_repeat 3 34 0 21 0 0 0 chr15 58965779 58965800 -26729954 + AT_rich Low_complexity Low_complexity 1 21 0 474 226 59 31 chr15 58965927 58966104 -26729650 - MLT1H1 LTR MaLR -393 162 1 225 295 60 64 chr15 58966129 58966410 -26729344 + HAL1 LINE L1 1219 1498 -1009 22 0 0 0 chr15 58966935 58966957 -26728797 + AT_rich Low_complexity Low_complexity 1 22 0 250 274 164 59 chr15 58966969 58968217 -26727537 + L1M4 LINE L1 2110 3487 -2659 8206 19 0 0 chr15 58968983 58970157 -26725597 - L1PA3 LINE L1 0 6155 4983 10419 20 1 0 chr15 58970157 58971341 -26724413 + L1PA3 LINE L1 3802 4986 -1160 1303 201 186 20 chr15 58971367 58971759 -26723995 + Charlie4a DNA MER1_type 52 508 0 459 0 0 0 chr15 58971909 58971960 -26723794 + (CA)n Simple_repeat Simple_repeat 1 51 0 263 254 0 0 chr15 58972680 58972739 -26723015 - Charlie8 DNA MER1_type -2356 61 3 10066 34 7 0 chr15 58972901 58974811 -26720943 - L1PA4 LINE L1 0 6155 4238 240 279 114 31 chr15 58975329 58975506 -26720248 - MIR SINE MIR -30 232 16 1195 201 0 18 chr15 58975516 58975735 -26720019 - MER58A DNA MER1_type -9 215 1 524 303 22 6 chr15 58977393 58977571 -26718183 + Charlie8 DNA MER1_type 84 264 -2153 252 256 219 15 chr15 58977825 58977962 -26717792 + MIR3 SINE MIR 19 183 -25 310 339 92 32 chr15 58978384 58978753 -26717001 + MLT1L LTR MaLR 192 582 -33 446 199 41 64 chr15 58979115 58979283 -26716471 - MER104 DNA Tc2 -3 177 14 1421 205 92 5 chr15 58979283 58979704 -26716050 + MER89 LTR ERV1 1 559 0 2842 147 46 15 chr15 58980358 58980577 -26715177 + MER34 LTR ERV1 4 215 -327 2588 151 19 2 chr15 58980577 58981002 -26714752 - MSTB1 LTR MaLR 0 432 1 2842 147 46 15 chr15 58981002 58981305 -26714449 + MER34 LTR ERV1 215 542 0 407 238 209 67 chr15 58982283 58982565 -26713189 - L1MC4a LINE L1 -1880 5928 5607 252 271 0 0 chr15 58982566 58982636 -26713118 + MIR SINE MIR 137 206 -56 270 323 57 97 chr15 58983863 58984368 -26711386 + L2 LINE L2 2430 2914 -400 611 220 65 9 chr15 58985105 58985337 -26710417 - HAL1b LINE L1 -205 1143 899 1037 284 100 23 chr15 58985413 58985633 -26710121 - L2 LINE L2 -145 3168 2966 2486 146 36 2 chr15 58985633 58986051 -26709703 - MSTB1 LTR MaLR 0 432 1 1037 284 100 23 chr15 58986051 58986350 -26709404 - L2 LINE L2 -347 2966 2617 1560 221 49 15 chr15 58986413 58986824 -26708930 - MLT1C LTR MaLR -9 458 34 4113 289 117 24 chr15 58986888 58988759 -26706995 - L2 LINE L2 -825 2489 444 2119 120 11 0 chr15 58990810 58991094 -26704660 - AluSx SINE Alu -25 287 1 2595 10 3 0 chr15 58991333 58991625 -26704129 + AluYa5 SINE Alu 1 293 -18 390 308 96 5 chr15 58991746 58991944 -26703810 - HAL1b LINE L1 -699 649 434 715 212 12 6 chr15 58992130 58992295 -26703459 - HAL1b LINE L1 -837 511 346 5815 73 2 9 chr15 58992295 58993113 -26702641 + L1PA13 LINE L1 5346 6158 -5 290 253 13 96 chr15 58993169 58993398 -26702356 - HAL1b LINE L1 -1048 300 91 486 246 8 22 chr15 58993762 58993896 -26701858 - MIR SINE MIR -10 252 121 22 35 0 0 chr15 58994558 58994587 -26701167 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 58995169 58995195 -26700559 + AT_rich Low_complexity Low_complexity 1 26 0 377 288 56 0 chr15 58995815 58995940 -26699814 + MIR SINE MIR 18 149 -113 951 198 77 21 chr15 58995951 58996278 -26699476 - MSTD LTR MaLR 0 396 1 304 351 160 37 chr15 58996333 58996683 -26699071 + L2 LINE L2 2245 2637 -677 758 232 91 134 chr15 58996684 58997258 -26698496 + MLT1H1 LTR MaLR 1 555 0 183 390 32 16 chr15 58997652 58997775 -26697979 - MER5A DNA MER1_type -6 183 59 * 188 376 37 9 chr15 58997677 58997786 -26697968 + MER5A DNA MER1_type 43 154 -35 326 302 66 0 chr15 58998116 58998222 -26697532 + L2 LINE L2 3157 3269 -3 1038 285 134 11 chr15 58999510 58999875 -26695879 - L2 LINE L2 -3 3310 2901 267 156 62 62 chr15 58999884 59000044 -26695710 + (TATAA)n Simple_repeat Simple_repeat 4 163 0 618 267 114 106 chr15 59000221 59000278 -26695476 - L2 LINE L2 0 3272 3217 586 255 107 15 chr15 59000278 59000474 -26695280 - MER58C DNA MER1_type -1 214 1 618 267 114 106 chr15 59000474 59000794 -26694960 - L2 LINE L2 -55 3217 2892 304 167 191 0 chr15 59000967 59001051 -26694703 - Charlie8 DNA MER1_type -2182 235 136 845 156 44 0 chr15 59001114 59001249 -26694505 + FRAM SINE Alu 12 152 -24 261 171 0 49 chr15 59001452 59001534 -26694220 + GA-rich Low_complexity Low_complexity 2 79 0 1165 240 80 58 chr15 59001673 59002135 -26693619 - L2 LINE L2 0 3313 2842 1235 246 123 3 chr15 59002352 59002933 -26692821 + Charlie2a DNA MER1_type 1 667 -2184 4342 222 87 38 chr15 59004741 59005943 -26689811 + Charlie2a DNA MER1_type 972 2113 -749 6742 133 30 36 chr15 59005943 59006519 -26689235 - Tigger3b DNA MER2_type -1797 1231 653 2215 96 10 7 chr15 59006519 59006820 -26688934 - AluSx SINE Alu -10 302 1 6742 133 30 36 chr15 59006820 59007273 -26688481 - Tigger3b DNA MER2_type -2375 653 209 2147 125 0 7 chr15 59007273 59007569 -26688185 - AluSx SINE Alu -18 294 1 6742 133 30 36 chr15 59007569 59007776 -26687978 - Tigger3b DNA MER2_type -2819 209 2 4342 222 87 38 chr15 59007776 59008374 -26687380 + Charlie2a DNA MER1_type 2113 2861 -1 217 236 65 122 chr15 59008382 59008566 -26687188 - MIR3 SINE MIR -14 194 16 448 221 0 0 chr15 59009547 59009660 -26686094 + L1M4 LINE L1 5188 5300 -846 * 685 242 10 5 chr15 59009657 59009855 -26685899 + L1MD3 LINE L1 7797 7995 0 382 186 34 51 chr15 59009853 59009971 -26685783 + L1M LINE L1 5285 5400 -766 * 758 223 23 51 chr15 59009965 59010221 -26685533 + L1M4 LINE L1 5 253 -6289 3849 242 52 33 chr15 59010242 59011761 -26683993 + L1M4 LINE L1 3353 4900 -1744 2858 213 63 36 chr15 59011787 59012670 -26683084 + L1M4 LINE L1 3997 4903 -1243 15690 67 3 6 chr15 59012678 59013034 -26682720 - HERVL-A1 LTR ERVL -3578 2076 1721 2439 78 0 3 chr15 59013034 59013341 -26682413 - AluY SINE Alu -5 306 1 15690 67 3 6 chr15 59013341 59015066 -26680688 - HERVL-A1 LTR ERVL -3933 1721 1 2793 80 61 14 chr15 59015066 59015490 -26680264 - MLT2A1 LTR ERVL 0 444 1 527 329 106 44 chr15 59015510 59015917 -26679837 - L1MEd LINE L1 -5262 857 426 250 386 31 0 chr15 59015944 59016071 -26679683 - L3 LINE CR1 -466 1111 981 213 357 153 13 chr15 59016150 59016307 -26679447 - MIR3 SINE MIR -9 199 21 444 150 0 0 chr15 59016373 59016453 -26679301 + (CA)n Simple_repeat Simple_repeat 2 81 0 521 136 8 32 chr15 59016877 59017002 -26678752 + CT-rich Low_complexity Low_complexity 3 124 0 309 270 62 73 chr15 59017115 59017293 -26678461 - L1ME4a LINE L1 -105 6016 5841 717 296 28 16 chr15 59017331 59017578 -26678176 - MIR SINE MIR -1 261 12 307 281 16 23 chr15 59017578 59017706 -26678048 - L1ME4a LINE L1 -310 5811 5685 342 312 17 8 chr15 59017710 59017944 -26677810 - L1ME4a LINE L1 -1002 5144 4909 433 305 53 0 chr15 59018207 59018338 -26677416 + MIR SINE MIR 48 185 -77 1340 309 132 41 chr15 59018845 59020066 -26675688 + L2 LINE L2 1520 2924 -348 228 111 0 0 chr15 59020066 59020102 -26675652 + (CA)n Simple_repeat Simple_repeat 2 37 0 1340 309 132 41 chr15 59020102 59020486 -26675268 + L2 LINE L2 2924 3272 0 1013 80 0 12 chr15 59020577 59020740 -26675014 + (TAGA)n Simple_repeat Simple_repeat 3 163 0 2039 92 115 9 chr15 59020740 59021087 -26674667 - MLT2A1 LTR ERVL -60 384 1 23 33 0 0 chr15 59021174 59021204 -26674550 + AT_rich Low_complexity Low_complexity 1 30 0 274 250 150 50 chr15 59021867 59021987 -26673767 + MIR SINE MIR 86 217 -45 569 252 9 0 chr15 59022359 59022470 -26673284 - MER81 DNA DNA 0 114 3 4441 133 17 18 chr15 59022537 59023318 -26672436 + L1MA8 LINE L1 5500 6279 -12 22 35 0 0 chr15 59023319 59023348 -26672406 + AT_rich Low_complexity Low_complexity 1 29 0 667 193 187 0 chr15 59023428 59023578 -26672176 - MER5B DNA MER1_type 0 178 1 465 264 81 40 chr15 59025213 59025387 -26670367 - L2 LINE L2 0 3313 3133 504 236 82 101 chr15 59026566 59026884 -26668870 + MLT1H LTR MaLR 116 427 -122 332 340 109 0 chr15 59026970 59027109 -26668645 - MIR SINE MIR -62 146 45 27 49 0 0 chr15 59027259 59027300 -26668454 + AT_rich Low_complexity Low_complexity 1 41 0 9610 148 30 43 chr15 59027300 59031012 -26664742 - L1MA4 LINE L1 0 6300 2588 339 341 8 8 chr15 59031372 59031504 -26664250 + MIR SINE MIR 3 134 -128 290 266 161 0 chr15 59031521 59031645 -26664109 + MIR SINE MIR 105 248 -14 267 182 0 0 chr15 59032172 59032216 -26663538 - Charlie3 DNA MER1_type -13 2697 2654 23834 38 2 0 chr15 59032701 59035581 -26660173 + L1PA5 LINE L1 2033 4916 -1230 246 33 0 0 chr15 59035575 59035605 -26660149 - L1P LINE L1 -2354 3792 3763 * 7740 26 0 0 chr15 59035606 59036614 -26659140 + L1PA3 LINE L1 5176 6183 0 7701 27 0 5 chr15 59036634 59037033 -26658721 + L1PA5 LINE L1 4909 5308 -846 2537 73 0 6 chr15 59037033 59037346 -26658408 + AluY SINE Alu 1 311 0 7701 27 0 5 chr15 59037346 59038181 -26657573 + L1PA5 LINE L1 5308 6139 -15 693 47 16 31 chr15 59038181 59038308 -26657446 + (TA)n Simple_repeat Simple_repeat 2 126 0 271 191 54 54 chr15 59038309 59038456 -26657298 - L1ME4a LINE L1 -123 5998 5852 634 226 0 0 chr15 59038520 59038635 -26657119 + FLAM_A SINE Alu 2 116 -17 25 0 0 0 chr15 59038828 59038853 -26656901 + AT_rich Low_complexity Low_complexity 1 25 0 327 274 121 0 chr15 59039013 59039137 -26656617 + L1ME LINE L1 5310 5448 -673 979 213 76 0 chr15 59039249 59039446 -26656308 - MER58A DNA MER1_type -12 212 1 512 279 147 22 chr15 59039446 59039756 -26655998 - MLT1I LTR MaLR -60 349 1 521 100 11 33 chr15 59039830 59039920 -26655834 - MER53 DNA DNA -1 188 101 271 165 63 25 chr15 59040237 59040316 -26655438 + MIR3 SINE MIR 119 200 -8 414 243 181 7 chr15 59040597 59040741 -26655013 + MIR SINE MIR 64 232 -30 192 77 0 0 chr15 59040949 59040975 -26654779 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 218 288 68 34 chr15 59041036 59041154 -26654600 - L2 LINE L2 -63 3250 3129 337 326 46 29 chr15 59043507 59043682 -26652072 - L2 LINE L2 -956 2358 2181 535 240 53 53 chr15 59043879 59044104 -26651650 + MLT1K LTR MaLR 364 588 0 25 0 0 0 chr15 59044133 59044158 -26651596 + AT_rich Low_complexity Low_complexity 1 25 0 3213 231 45 5 chr15 59044431 59045201 -26650553 + L1MC4 LINE L1 6460 7260 -782 2745 186 6 4 chr15 59045315 59045782 -26649972 - MER66B LTR ERV1 0 486 19 237 215 89 63 chr15 59046034 59046113 -26649641 - MLT1J LTR MaLR -193 318 238 431 301 45 0 chr15 59046356 59046512 -26649242 - MLT1L LTR MaLR -50 565 403 377 338 54 33 chr15 59046544 59046784 -26648970 + MLT1K LTR MaLR 282 526 -62 3435 144 25 0 chr15 59046829 59047386 -26648368 + L1MB2 LINE L1 5599 6169 -2 243 186 0 0 chr15 59047400 59047443 -26648311 + MLT1K LTR MaLR 540 582 -6 212 326 75 77 chr15 59047480 59047869 -26647885 - L2 LINE L2 -1145 2169 1782 185 200 36 0 chr15 59048168 59048223 -26647531 + (TATG)n Simple_repeat Simple_repeat 3 59 0 5708 127 3 2 chr15 59048273 59049615 -26646139 - L1PA16 LINE L1 -9 6157 4801 584 252 29 58 chr15 59049615 59049821 -26645933 - L1MC4 LINE L1 -465 7577 7378 277 330 0 10 chr15 59049872 59049969 -26645785 - MIR SINE MIR -147 115 20 425 182 182 13 chr15 59050174 59050303 -26645451 + MER5A DNA MER1_type 5 160 -29 2191 227 76 40 chr15 59051848 59051975 -26643779 + L1ME3 LINE L1 5349 5470 -692 2241 86 0 0 chr15 59051975 59052254 -26643500 - AluY SINE Alu -4 307 29 2191 227 76 40 chr15 59052254 59052891 -26642863 + L1ME3 LINE L1 5470 6154 -8 490 314 50 27 chr15 59052943 59053163 -26642591 + MLT1I LTR MaLR 185 409 0 651 210 14 14 chr15 59053213 59053331 -26642423 + FLAM_C SINE Alu 1 121 -191 234 0 0 0 chr15 59053331 59053357 -26642397 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 651 210 14 14 chr15 59053357 59053381 -26642373 + FLAM_C SINE Alu 120 143 -169 651 86 0 35 chr15 59053381 59053497 -26642257 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 4820 104 20 24 chr15 59054546 59055295 -26640459 + L1PA14 LINE L1 5416 6161 0 2246 104 0 16 chr15 59055356 59055664 -26640090 + AluSq SINE Alu 1 303 -10 326 196 0 0 chr15 59057109 59057165 -26638589 + MLT1L LTR MaLR 133 188 -427 180 359 0 0 chr15 59057674 59057752 -26638002 - MIR3 SINE MIR -22 186 109 2044 216 94 44 chr15 59058158 59058763 -26636991 + MLT1E2 LTR MaLR 5 626 0 402 310 42 0 chr15 59058907 59059049 -26636705 + MER117 DNA MER1_type 8 155 -42 304 306 52 86 chr15 59061037 59061419 -26634335 - LTR16C LTR ERVL 0 491 123 398 264 86 14 chr15 59061680 59061820 -26633934 + MIR SINE MIR 56 205 -57 411 258 82 11 chr15 59061868 59062050 -26633704 + L1ME3A LINE L1 5719 5913 -208 422 297 124 77 chr15 59062155 59062519 -26633235 + MLT1L LTR MaLR 36 416 -199 234 316 90 15 chr15 59062668 59062801 -26632953 - MIR SINE MIR -48 214 72 233 381 65 0 chr15 59063132 59063300 -26632454 - L2 LINE L2 -623 2691 2513 1705 166 3 34 chr15 59064041 59064336 -26631418 - AluJb SINE Alu -14 298 13 657 128 0 135 chr15 59065526 59065674 -26630080 + AluJb SINE Alu 2 129 -183 557 156 6 38 chr15 59065685 59065845 -26629909 + (TA)n Simple_repeat Simple_repeat 1 155 0 330 45 0 0 chr15 59065846 59065890 -26629864 + (GA)n Simple_repeat Simple_repeat 1 44 0 1813 109 49 19 chr15 59065892 59066158 -26629596 - AluSx SINE Alu -38 274 1 616 14 0 14 chr15 59066343 59066416 -26629338 + tRNA-Cys-TGC tRNA tRNA 1 72 -3 43432 35 23 2 chr15 59066777 59072803 -26622951 - L1PA3 LINE L1 0 6155 2 2079 111 9 35 chr15 59073067 59073382 -26622372 + AluSx SINE Alu 1 307 -5 1694 157 0 56 chr15 59073987 59074292 -26621462 - AluJb SINE Alu -24 288 1 2254 114 0 0 chr15 59074481 59074770 -26620984 + AluSx SINE Alu 1 289 -23 215 30 0 30 chr15 59075408 59075441 -26620313 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 276 194 146 29 chr15 59075466 59075569 -26620185 - MIR SINE MIR -87 175 61 896 139 0 22 chr15 59075949 59076086 -26619668 - AluJo SINE Alu -178 134 1 819 108 9 0 chr15 59076618 59076729 -26619025 + FLAM_C SINE Alu 12 123 -20 294 220 130 30 chr15 59077126 59077226 -26618528 + MIR SINE MIR 149 258 -4 429 228 159 28 chr15 59077460 59077605 -26618149 + L1ME3A LINE L1 5947 6110 -60 1496 135 106 53 chr15 59077633 59077915 -26617839 - AluJb SINE Alu -15 297 1 2001 86 0 8 chr15 59078368 59078623 -26617131 - AluSp SINE Alu -60 253 1 302 313 35 26 chr15 59080530 59080645 -26615109 + MER5B DNA MER1_type 4 119 -59 1661 168 45 11 chr15 59080648 59080934 -26614820 - AluSx SINE Alu -1 311 16 704 208 0 8 chr15 59080959 59081089 -26614665 - FLAM_A SINE Alu -4 129 1 2244 116 26 0 chr15 59081261 59081563 -26614191 + AluSx SINE Alu 1 310 -2 2301 98 3 0 chr15 59082044 59082341 -26613413 - AluY SINE Alu -13 298 1 708 283 64 19 chr15 59082608 59082873 -26612881 + MLT1J1 LTR MaLR 63 339 -107 243 88 0 0 chr15 59082979 59083013 -26612741 + (TTG)n Simple_repeat Simple_repeat 1 34 0 8350 75 7 8 chr15 59083432 59084505 -26611249 - MER11C LTR ERVK 0 1071 1 367 187 67 13 chr15 59085014 59085089 -26610665 + MLT1L LTR MaLR 1 79 -536 362 276 135 12 chr15 59085121 59085291 -26610463 + MLT1L LTR MaLR 190 380 -235 701 158 8 0 chr15 59085542 59085662 -26610092 + FLAM_A SINE Alu 2 122 -11 194 0 39 0 chr15 59085675 59085701 -26610053 + (GA)n Simple_repeat Simple_repeat 2 28 0 235 290 0 54 chr15 59085818 59085911 -26609843 - MLT1J LTR MaLR -193 318 231 630 306 24 5 chr15 59086879 59087085 -26608669 + MER63A DNA MER1_type 1 210 0 1659 275 62 26 chr15 59087136 59087993 -26607761 - L1MCc LINE L1 -4887 1536 813 993 264 72 12 chr15 59088192 59088593 -26607161 - L1MCc LINE L1 -5975 448 24 360 317 49 0 chr15 59089403 59089567 -26606187 - MIR SINE MIR -41 221 50 315 177 305 43 chr15 59089674 59089815 -26605939 - MER5B DNA MER1_type 0 178 1 281 308 116 20 chr15 59089820 59090018 -26605736 + L2 LINE L2 2834 3050 -222 259 310 52 35 chr15 59090688 59090862 -26604892 - MIR SINE MIR -57 205 29 947 139 133 6 chr15 59090920 59091100 -26604654 - MER20 DNA MER1_type 0 219 17 541 254 16 90 chr15 59091326 59091582 -26604172 - L2 LINE L2 0 3313 3077 342 308 26 17 chr15 59091710 59091827 -26603927 - LTR67 LTR ERVL -308 249 132 1022 169 99 73 chr15 59092857 59093170 -26602584 - MER33 DNA MER1_type 0 324 4 246 339 32 0 chr15 59093387 59093511 -26602243 - L2 LINE L2 -8 3305 3178 1326 199 85 11 chr15 59096271 59096542 -26599212 + AluJb SINE Alu 1 291 -21 385 262 156 0 chr15 59096923 59097064 -26598690 - MIR SINE MIR -6 256 94 290 340 50 0 chr15 59097309 59097409 -26598345 - L2 LINE L2 -64 3208 3104 1953 177 82 15 chr15 59097459 59097860 -26597894 - MSTA LTR MaLR 0 428 1 331 268 10 21 chr15 59097889 59097986 -26597768 - LTR33 LTR ERVL 0 521 426 2126 109 102 61 chr15 59099117 59099528 -26596226 - MSTA LTR MaLR 0 428 1 949 192 111 5 chr15 59100335 59100533 -26595221 - MER20 DNA MER1_type 0 219 1 1589 195 7 20 chr15 59100857 59101154 -26594600 - AluJb SINE Alu -19 293 1 283 79 37 9 chr15 59101328 59101399 -26594355 - L1MA4A LINE L1 -5 6298 6222 23378 174 19 14 chr15 59101432 59105935 -26589819 + L1PA12 LINE L1 4 5361 -2245 2295 112 0 0 chr15 59105935 59106230 -26589524 + AluSq SINE Alu 1 295 -18 23378 174 19 14 chr15 59106230 59108487 -26587267 + L1PA12 LINE L1 5361 7606 0 2550 197 13 15 chr15 59108698 59109171 -26586583 - MER70A LTR ERVL 0 472 1 225 0 0 0 chr15 59109401 59109426 -26586328 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 194 174 22 0 chr15 59109428 59109474 -26586280 + CT-rich Low_complexity Low_complexity 1 47 0 606 336 47 58 chr15 59109487 59109850 -26585904 - L2 LINE L2 -1 3271 2913 857 53 106 0 chr15 59110086 59110199 -26585555 + AluYa5 SINE Alu 1 125 -186 2015 143 3 0 chr15 59110208 59110502 -26585252 + AluSq SINE Alu 1 295 -18 3232 130 35 35 chr15 59110502 59111036 -26584718 + L1MB3 LINE L1 5600 6138 -45 1730 143 24 20 chr15 59111036 59111330 -26584424 + AluJo SINE Alu 2 296 -16 3232 130 35 35 chr15 59111330 59111376 -26584378 + L1MB3 LINE L1 6137 6182 -1 26 30 0 0 chr15 59111950 59111983 -26583771 + AT_rich Low_complexity Low_complexity 1 33 0 476 289 123 46 chr15 59112044 59113149 -26582605 + L1MC4a LINE L1 2377 3566 -2580 465 302 54 14 chr15 59113269 59113491 -26582263 + L1MA9 LINE L1 6044 6274 -38 1942 154 7 0 chr15 59113496 59113813 -26581941 - AluJb SINE Alu 0 312 1 28 0 0 0 chr15 59113813 59113841 -26581913 + AT_rich Low_complexity Low_complexity 1 28 0 353 248 8 64 chr15 59113863 59113928 -26581826 + L1MC4a LINE L1 3784 3840 -2306 2177 126 0 3 chr15 59113928 59114229 -26581525 + AluSx SINE Alu 1 300 -12 353 248 8 64 chr15 59114229 59114288 -26581466 + L1MC4a LINE L1 3840 3901 -2245 531 209 9 0 chr15 59114291 59114396 -26581358 - L2 LINE L2 -1844 1470 1365 639 272 63 13 chr15 59114814 59115053 -26580701 + L1MC4a LINE L1 5624 5874 -1934 722 203 0 0 chr15 59115196 59115319 -26580435 - FLAM_A SINE Alu -10 123 1 831 247 5 10 chr15 59115338 59115532 -26580222 + AluJo SINE Alu 120 312 0 220 363 0 0 chr15 59115773 59115853 -26579901 - MIR SINE MIR -65 143 64 242 161 18 36 chr15 59115913 59115969 -26579785 + L2 LINE L2 2995 3049 -223 491 211 32 0 chr15 59116139 59116234 -26579520 + MER96 DNA MER1_type? 1 98 -77 2295 110 7 7 chr15 59116489 59116797 -26578957 + AluSc SINE Alu 1 308 -1 1220 157 4 29 chr15 59117267 59117509 -26578245 + L1PA15 LINE L1 5930 6165 0 29 0 0 0 chr15 59118599 59118628 -26577126 + AT_rich Low_complexity Low_complexity 1 29 0 4199 179 56 13 chr15 59119042 59119815 -26575939 - L1MB7 LINE L1 -12 6172 5434 1875 145 47 0 chr15 59119815 59120111 -26575643 - AluSq SINE Alu -3 310 1 4199 179 56 13 chr15 59120111 59120326 -26575428 - L1MB7 LINE L1 -750 5434 5230 2315 96 10 13 chr15 59120326 59120640 -26575114 - AluSq SINE Alu 0 313 1 4199 179 56 13 chr15 59120640 59121025 -26574729 - L1MB7 LINE L1 -954 5230 4735 906 141 7 15 chr15 59121034 59121169 -26574585 - AluJo SINE Alu -178 134 1 453 211 153 3 chr15 59121169 59121312 -26574442 - L1MB7 LINE L1 -1398 4748 4588 364 123 27 0 chr15 59121711 59121784 -26573970 + CT-rich Low_complexity Low_complexity 2 76 0 198 0 0 0 chr15 59121784 59121806 -26573948 + (CA)n Simple_repeat Simple_repeat 1 22 0 1656 149 47 30 chr15 59122022 59122318 -26573436 - AluJo SINE Alu -11 301 1 879 143 14 29 chr15 59122477 59122617 -26573137 + AluJo SINE Alu 1 138 -174 2678 93 27 0 chr15 59123198 59123573 -26572181 - L1PA11 LINE L1 -6 6168 5784 377 261 14 116 chr15 59124286 59124372 -26571382 + MIR SINE MIR 32 86 -176 2074 111 28 3 chr15 59124372 59124661 -26571093 - AluSc SINE Alu -13 296 1 377 261 14 116 chr15 59124661 59124781 -26570973 + MIR SINE MIR 86 217 -45 679 301 127 10 chr15 59125085 59125384 -26570370 + LTR16B LTR ERVL 3 336 -128 224 349 62 7 chr15 59125622 59125768 -26569986 + L3 LINE CR1 1393 1546 -31 391 283 61 20 chr15 59126378 59126576 -26569178 + L2 LINE L2 1784 1989 -1325 541 278 0 8 chr15 59126632 59126765 -26568989 - L2 LINE L2 -2 3311 3180 350 234 53 0 chr15 59127126 59127220 -26568534 - MIR SINE MIR -54 208 110 21 0 0 0 chr15 59127278 59127299 -26568455 + AT_rich Low_complexity Low_complexity 1 21 0 316 292 71 19 chr15 59127377 59127531 -26568223 - MARNA DNA Mariner -164 422 261 2373 192 51 20 chr15 59127775 59128077 -26567677 - MLT1D LTR MaLR 0 505 181 2000 143 3 16 chr15 59128077 59128384 -26567370 - AluSx SINE Alu -9 303 1 2373 192 51 20 chr15 59128384 59128571 -26567183 - MLT1D LTR MaLR -324 181 1 224 208 0 21 chr15 59128646 59128694 -26567060 + GA-rich Low_complexity Low_complexity 2 48 0 229 263 40 40 chr15 59128902 59129001 -26566753 - MARNA DNA Mariner -331 255 157 494 168 17 50 chr15 59129411 59129530 -26566224 + L1MC4 LINE L1 7914 8028 -14 2394 99 0 7 chr15 59129537 59129840 -26565914 - AluSx SINE Alu -11 301 1 3030 198 150 10 chr15 59129892 59130769 -26564985 + L1ME1 LINE L1 5175 6157 -9 306 0 0 0 chr15 59131729 59131763 -26563991 + (CA)n Simple_repeat Simple_repeat 2 35 0 307 297 25 34 chr15 59132311 59132429 -26563325 + MIR SINE MIR 92 208 -54 726 238 119 25 chr15 59132497 59132732 -26563022 - LTR16C LTR ERVL 0 491 235 631 311 87 39 chr15 59133079 59133590 -26562164 - L2 LINE L2 -31 3241 2708 261 0 0 0 chr15 59134296 59134325 -26561429 + (TG)n Simple_repeat Simple_repeat 1 29 0 207 213 131 0 chr15 59134474 59134535 -26561219 - MIR SINE MIR -73 189 121 435 118 0 0 chr15 59135137 59135213 -26560541 + (TG)n Simple_repeat Simple_repeat 1 76 0 213 210 16 32 chr15 59135891 59135953 -26559801 + L2 LINE L2 3206 3266 -6 269 240 108 70 chr15 59136932 59137061 -26558693 + MIR SINE MIR 39 172 -90 277 367 0 8 chr15 59137076 59137196 -26558558 - L2 LINE L2 -20 3252 3134 185 205 0 0 chr15 59137324 59137363 -26558391 - L2 LINE L2 -226 3046 3008 500 168 53 0 chr15 59137975 59138070 -26557684 - U6 snRNA snRNA -6 101 2 2362 73 0 13 chr15 59138710 59139010 -26556744 - AluY SINE Alu -15 296 1 2116 97 57 0 chr15 59139010 59139289 -26556465 - AluSx SINE Alu -10 302 8 742 258 61 91 chr15 59139349 59139876 -26555878 + MLT1J LTR MaLR 1 511 0 1232 312 114 15 chr15 59140247 59140643 -26555111 + L2 LINE L2 1940 2295 -977 4241 152 35 3 chr15 59140643 59141382 -26554372 + L1MB3 LINE L1 5419 6181 -2 1232 312 114 15 chr15 59141382 59142172 -26553582 + L2 LINE L2 2295 3271 -1 1685 252 15 5 chr15 59142235 59142640 -26553114 + ERVL-F LTR ERVL 4808 5216 -548 448 194 17 25 chr15 59142646 59142825 -26552929 + MER58A DNA MER1_type 1 224 0 1205 246 88 47 chr15 59142829 59143302 -26552452 + ERVL-F LTR ERVL 5219 5755 -9 1820 205 212 29 chr15 59143307 59143864 -26551890 + MLT2F LTR ERVL 5 663 0 226 281 16 47 chr15 59144041 59144169 -26551585 + MIR SINE MIR 23 146 -116 272 271 31 42 chr15 59145871 59145967 -26549787 - MIR SINE MIR -68 140 46 23 0 0 0 chr15 59146149 59146172 -26549582 + AT_rich Low_complexity Low_complexity 1 23 0 528 260 107 66 chr15 59146177 59146711 -26549043 - L1ME4a LINE L1 -260 5861 5284 238 327 11 17 chr15 59146951 59147054 -26548700 + GA-rich Low_complexity Low_complexity 2 179 0 205 286 0 18 chr15 59147737 59147793 -26547961 - MER5A DNA MER1_type -76 113 59 894 251 64 78 chr15 59148485 59148541 -26547213 + L1MCc LINE L1 1281 1336 -5605 1985 107 3 45 chr15 59148541 59148849 -26546905 + AluSc SINE Alu 1 295 -14 894 251 64 78 chr15 59148849 59149503 -26546251 + L1MCc LINE L1 1336 2151 -4790 193 244 0 0 chr15 59149556 59149597 -26546157 + MER5B DNA MER1_type 79 119 -59 230 338 36 43 chr15 59149609 59149748 -26546006 - MER5A DNA MER1_type -39 150 13 240 262 6 65 chr15 59149756 59149855 -26545899 - MIR SINE MIR -62 146 63 583 217 160 6 chr15 59150095 59150270 -26545484 - MIR SINE MIR -12 250 49 275 224 122 39 chr15 59150437 59150593 -26545161 + MIR SINE MIR 21 189 -73 319 329 7 14 chr15 59151419 59151559 -26544195 + GA-rich Low_complexity Low_complexity 3 141 0 281 203 139 0 chr15 59152297 59152376 -26543378 + MIR SINE MIR 117 206 -56 1331 244 57 27 chr15 59153508 59153941 -26541813 - LTR16A LTR ERVL 0 450 6 532 290 54 47 chr15 59154346 59154625 -26541129 - LTR16C LTR ERVL 0 491 211 1319 161 29 0 chr15 59156092 59156297 -26539457 - AluJb SINE Alu -16 296 86 320 276 20 20 chr15 59156491 59156589 -26539165 - MER5A DNA MER1_type -1 188 91 909 177 43 48 chr15 59156629 59156838 -26538916 + MER3 DNA MER1_type 1 208 -1 341 119 12 107 chr15 59156874 59156958 -26538796 + MER5A DNA MER1_type 28 103 -86 402 57 0 0 chr15 59157182 59157235 -26538519 + (TG)n Simple_repeat Simple_repeat 1 53 0 2350 109 3 0 chr15 59157992 59158304 -26537450 + AluSp SINE Alu 1 313 0 4186 236 118 86 chr15 59158777 59159120 -26536634 + Charlie7 DNA MER1_type 48 379 -2233 2137 96 3 27 chr15 59159120 59159421 -26536333 + AluY SINE Alu 11 304 -7 4186 236 118 86 chr15 59159421 59159462 -26536292 + Charlie7 DNA MER1_type 379 417 -2195 1477 136 13 8 chr15 59159462 59159697 -26536057 + MER46A DNA MER2_type 1 236 0 4186 236 118 86 chr15 59159697 59160486 -26535268 + Charlie7 DNA MER1_type 417 1179 -1433 1890 156 0 0 chr15 59160486 59160768 -26534986 + AluSx SINE Alu 1 282 -30 548 33 83 0 chr15 59160771 59160891 -26534863 + (TA)n Simple_repeat Simple_repeat 2 131 0 4186 236 118 86 chr15 59160891 59161130 -26534624 + Charlie7 DNA MER1_type 1180 1410 -1202 2140 97 0 40 chr15 59161130 59161430 -26534324 + AluSg SINE Alu 1 288 -22 4186 236 118 86 chr15 59161430 59161815 -26533939 + Charlie7 DNA MER1_type 1410 1781 -831 555 105 0 35 chr15 59161815 59161934 -26533820 - FRAM SINE Alu 0 176 73 4186 236 118 86 chr15 59161934 59162245 -26533509 + Charlie7 DNA MER1_type 1781 2319 -293 22 35 0 0 chr15 59162382 59162411 -26533343 + AT_rich Low_complexity Low_complexity 1 29 0 539 307 79 56 chr15 59164351 59165048 -26530706 - L2 LINE L2 -107 3165 2443 241 292 92 42 chr15 59166280 59166400 -26529354 + MER5A DNA MER1_type 61 186 -3 5025 165 12 18 chr15 59167943 59168014 -26527740 + L1MB1 LINE L1 5275 5345 -823 2259 74 50 0 chr15 59168014 59168297 -26527457 + AluY SINE Alu 5 301 -10 5025 165 12 18 chr15 59168297 59169124 -26526630 + L1MB1 LINE L1 5345 6168 0 31 0 0 0 chr15 59169594 59169625 -26526129 + AT_rich Low_complexity Low_complexity 1 31 0 307 175 25 62 chr15 59170623 59170703 -26525051 + MIR SINE MIR 69 145 -117 252 304 55 55 chr15 59170915 59170984 -26524770 - L2 LINE L2 -1226 2088 2020 1035 215 23 5 chr15 59170984 59171198 -26524556 - MER58A DNA MER1_type -4 220 3 252 304 55 55 chr15 59171198 59171365 -26524389 - L2 LINE L2 -1293 2021 1852 202 351 0 0 chr15 59172134 59172208 -26523546 - L2 LINE L2 -12 3260 3187 332 242 44 0 chr15 59172243 59172334 -26523420 - MIR SINE MIR -99 163 69 335 262 28 19 chr15 59172468 59172575 -26523179 + MIR SINE MIR 3 110 -152 267 281 99 16 chr15 59173973 59174094 -26521660 + MIR SINE MIR 41 171 -91 265 241 29 12 chr15 59174527 59174663 -26521091 - MIR SINE MIR -29 233 33 343 218 200 58 chr15 59174780 59175005 -26520749 - LTR33 LTR ERVL -7 514 258 326 290 20 10 chr15 59175057 59175157 -26520597 - LTR33 LTR ERVL -418 103 3 180 77 0 0 chr15 59175447 59175473 -26520281 + (CACCAT)n Simple_repeat Simple_repeat 5 30 0 869 230 120 15 chr15 59175557 59175757 -26519997 + MER58A DNA MER1_type 3 223 -1 188 179 0 0 chr15 59176058 59176097 -26519657 + MIR SINE MIR 106 144 -118 5809 131 12 2 chr15 59176118 59177007 -26518747 - L1PA15 LINE L1 -4 6161 5264 1487 156 24 24 chr15 59177093 59177406 -26518348 + L1MB2 LINE L1 5874 6186 0 2465 70 0 10 chr15 59177600 59177901 -26517853 - AluSq SINE Alu -15 298 1 2401 81 14 3 chr15 59178341 59178638 -26517116 + AluSg SINE Alu 1 300 -10 432 268 120 0 chr15 59179040 59179182 -26516572 + MIR3 SINE MIR 34 192 -16 512 286 60 76 chr15 59179551 59180138 -26515616 + L1ME4a LINE L1 4375 4970 -1176 2217 116 0 0 chr15 59180138 59180441 -26515313 + AluSx SINE Alu 1 303 -9 512 286 60 76 chr15 59180441 59180710 -26515044 + L1ME4a LINE L1 4970 5217 -929 2436 78 0 0 chr15 59180710 59181004 -26514750 + AluY SINE Alu 1 294 -17 512 286 60 76 chr15 59181004 59181096 -26514658 + L1ME4a LINE L1 5217 5309 -837 425 294 96 18 chr15 59181673 59181891 -26513863 - MIR SINE MIR -15 247 13 190 378 64 26 chr15 59181874 59182030 -26513724 + L2 LINE L2 3090 3251 -21 * 609 287 126 29 chr15 59182083 59182536 -26513218 + L1ME4a LINE L1 5521 6017 -104 217 335 173 43 chr15 59183510 59184047 -26511707 + L2 LINE L2 2217 2823 -491 458 201 153 88 chr15 59184109 59184542 -26511212 + MLT1J LTR MaLR 5 509 -2 289 296 191 13 chr15 59184658 59184810 -26510944 + MIR SINE MIR 60 238 -24 2250 119 0 0 chr15 59184867 59185170 -26510584 + AluSx SINE Alu 1 303 -9 226 254 75 15 chr15 59185292 59185359 -26510395 + L2 LINE L2 3202 3272 0 21 36 0 0 chr15 59186624 59186652 -26509102 + AT_rich Low_complexity Low_complexity 1 28 0 1990 105 0 84 chr15 59187257 59187590 -26508164 + AluSp SINE Alu 1 305 -8 1579 186 176 32 chr15 59189050 59189453 -26506301 + MLT2B1 LTR ERVL 1 461 -59 1690 179 31 0 chr15 59190032 59190323 -26505431 - AluJo SINE Alu -12 300 1 23 33 0 0 chr15 59190333 59190363 -26505391 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 79 77 chr15 59190539 59190816 -26504938 + HAL1b LINE L1 179 459 -889 898 260 58 0 chr15 59190816 59191024 -26504730 + MER58A DNA MER1_type 5 224 0 343 284 79 77 chr15 59191024 59191253 -26504501 + HAL1b LINE L1 459 686 -662 1829 151 10 10 chr15 59191611 59191909 -26503845 + AluSx SINE Alu 4 301 -11 1433 130 0 10 chr15 59192540 59192748 -26503006 + AluSc SINE Alu 99 304 -5 1189 187 148 69 chr15 59193017 59193463 -26502291 - MER66A LTR ERV1 0 478 97 2142 133 0 7 chr15 59194936 59195238 -26500516 - AluSx SINE Alu -10 302 3 741 239 32 32 chr15 59195597 59195785 -26499969 + MIR SINE MIR 16 203 -59 2065 82 57 14 chr15 59197504 59197786 -26497968 + AluSg SINE Alu 1 294 -16 1046 112 0 0 chr15 59197799 59197933 -26497821 + AluSq/x SINE Alu 1 134 -178 196 198 0 55 chr15 59198082 59198173 -26497581 + CT-rich Low_complexity Low_complexity 1 86 0 * 532 216 18 29 chr15 59198169 59198453 -26497301 + T-rich Low_complexity Low_complexity 1 280 0 592 262 0 6 chr15 59198498 59198666 -26497088 - AluSg SINE Alu -143 167 1 267 151 274 0 chr15 59198669 59198742 -26497012 + MER112 DNA MER1_type 137 229 -31 271 207 67 152 chr15 59198921 59199042 -26496712 - HAL1b LINE L1 -452 896 766 2533 74 0 0 chr15 59199042 59199352 -26496402 - AluY SINE Alu -1 310 1 2120 123 0 0 chr15 59199354 59199646 -26496108 - AluSg1 SINE Alu -17 292 1 271 207 67 152 chr15 59199646 59199685 -26496069 - HAL1b LINE L1 -583 765 747 2379 80 0 7 chr15 59199798 59200098 -26495656 - AluSc SINE Alu -11 298 1 225 301 133 14 chr15 59200668 59200811 -26494943 + L3 LINE CR1 1364 1523 -54 1084 329 58 28 chr15 59201441 59202058 -26493696 - L2 LINE L2 -359 2955 2320 2027 125 0 34 chr15 59203466 59203787 -26491967 - AluJb SINE Alu -2 310 1 298 284 131 26 chr15 59204526 59204907 -26490847 + HAL1 LINE L1 816 1236 -1271 2022 112 56 0 chr15 59205146 59205431 -26490323 - AluSx SINE Alu -11 301 1 297 282 153 59 chr15 59205571 59205741 -26490013 - L2 LINE L2 -9 3304 3119 914 237 152 113 chr15 59206401 59206949 -26488805 - MLT1K LTR MaLR -3 585 17 355 250 64 144 chr15 59207237 59207597 -26488157 + L3 LINE CR1 331 661 -916 738 310 87 4 chr15 59208135 59208364 -26487390 + MIR SINE MIR 1 248 -14 220 114 0 91 chr15 59208333 59208377 -26487377 + L2 LINE L2 3263 3302 -11 * 769 221 90 49 chr15 59208517 59208761 -26486993 + MIR SINE MIR 7 260 -2 1817 171 7 0 chr15 59209180 59209466 -26486288 - AluJo SINE Alu -24 288 1 241 186 0 0 chr15 59210005 59210048 -26485706 - MLT1B LTR MaLR -37 353 311 359 296 80 8 chr15 59210464 59210589 -26485165 - MIR3 SINE MIR -54 154 21 198 333 12 24 chr15 59211420 59211504 -26484250 + L2 LINE L2 3014 3096 -176 293 345 43 22 chr15 59211594 59211733 -26484021 - L3 LINE CR1 -113 1464 1323 2338 83 0 35 chr15 59212009 59212323 -26483431 + AluY SINE Alu 1 303 -8 231 217 72 48 chr15 59212596 59212679 -26483075 - MER112 DNA MER1_type -175 85 1 1329 107 0 0 chr15 59212889 59213067 -26482687 + AluSg/x SINE Alu 129 306 -6 308 270 112 19 chr15 59213274 59213489 -26482265 - L1M4c LINE L1 -4238 2587 2353 542 251 19 71 chr15 59213490 59213701 -26482053 + LTR4 LTR ERV1 1 200 -396 743 277 21 28 chr15 59213887 59214169 -26481585 + LTR4 LTR ERV1 317 596 0 1893 235 68 83 chr15 59214185 59214668 -26481086 - L1M4c LINE L1 -4486 2339 1851 2207 120 0 7 chr15 59214668 59214967 -26480787 - AluSc SINE Alu -11 298 2 1893 235 68 83 chr15 59214967 59215327 -26480427 - L1M4c LINE L1 -4974 1851 1487 2155 125 0 7 chr15 59215327 59215624 -26480130 - AluSc SINE Alu -14 295 1 1893 235 68 83 chr15 59215624 59215754 -26480000 - L1M4c LINE L1 -5338 1487 1357 2362 89 0 10 chr15 59215754 59216056 -26479698 - AluY SINE Alu -12 299 1 1893 235 68 83 chr15 59216056 59216313 -26479441 - L1M4c LINE L1 -5468 1357 976 2053 180 56 2 chr15 59216480 59216929 -26478825 - L1M4 LINE L1 -805 5341 4869 667 228 23 13 chr15 59216918 59217120 -26478634 - L1M1 LINE L1 -4630 1752 1509 * 4109 72 19 0 chr15 59217120 59217644 -26478110 + MER11B LTR ERVK 1 534 -702 2734 189 50 35 chr15 59217644 59218246 -26477508 - L1M4c LINE L1 -5918 624 14 1533 181 0 4 chr15 59218861 59219138 -26476616 - L1MB7 LINE L1 -206 5978 5703 1962 117 42 0 chr15 59219138 59219421 -26476333 + AluSx SINE Alu 1 295 -17 2695 39 7 0 chr15 59219589 59219898 -26475856 + AluY SINE Alu 1 311 0 550 305 70 0 chr15 59220177 59220390 -26475364 - MIR SINE MIR -34 228 1 786 291 99 12 chr15 59220393 59220737 -26475017 - L1ME3A LINE L1 -248 5922 5549 183 305 140 37 chr15 59221450 59221614 -26474140 - L2 LINE L2 -702 2612 2432 1937 134 7 10 chr15 59221986 59222292 -26473462 - AluSx SINE Alu -7 305 1 316 354 28 22 chr15 59222304 59222485 -26473269 + L1ME4a LINE L1 5567 5748 -416 327 239 34 60 chr15 59222527 59222588 -26473166 + L1ME4a LINE L1 5820 5881 -240 2298 84 7 7 chr15 59222588 59222897 -26472857 + AluSc SINE Alu 1 309 0 1668 130 4 29 chr15 59222903 59223179 -26472575 + AluJo SINE Alu 44 312 0 327 239 34 60 chr15 59223179 59223227 -26472527 + L1ME4a LINE L1 5886 5933 -188 2222 92 3 0 chr15 59223450 59223733 -26472021 + AluSg SINE Alu 2 285 -25 4725 164 41 19 chr15 59224210 59225158 -26470596 + L1MB7 LINE L1 4914 5896 -288 1800 144 21 25 chr15 59225158 59225443 -26470311 + AluJo SINE Alu 13 296 -16 4725 164 41 19 chr15 59225443 59225723 -26470031 + L1MB7 LINE L1 5896 6168 -16 2531 209 57 25 chr15 59225719 59226392 -26469362 + L1MC4a LINE L1 5924 6617 -1191 * 264 30 0 0 chr15 59227552 59227585 -26468169 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4569 193 112 20 chr15 59227626 59228725 -26467029 + L1MC4a LINE L1 6608 7807 -1 1364 193 35 8 chr15 59228842 59229101 -26466653 + AluJo SINE Alu 1 266 -46 2417 90 0 0 chr15 59229580 59229890 -26465864 + AluY SINE Alu 1 310 -1 239 282 165 21 chr15 59229940 59230128 -26465626 - MIR SINE MIR -1 261 47 208 353 24 24 chr15 59230234 59230319 -26465435 + L2 LINE L2 3186 3270 -2 272 270 222 8 chr15 59230365 59230491 -26465263 + L3 LINE CR1 970 1122 -455 330 136 30 0 chr15 59230942 59231008 -26464746 - AluS SINE Alu -235 68 1 1875 128 3 37 chr15 59231033 59231331 -26464423 - AluY SINE Alu -23 288 1 2062 189 91 20 chr15 59231340 59231610 -26464144 - L1MD3 LINE L1 0 7995 7745 2216 123 3 0 chr15 59231610 59231919 -26463835 - AluSg SINE Alu 0 310 1 2062 189 91 20 chr15 59231919 59232145 -26463609 - L1MD3 LINE L1 -250 7745 7464 830 124 8 0 chr15 59232145 59232266 -26463488 - AluSc SINE Alu -162 147 26 2129 66 38 7 chr15 59232394 59232681 -26463073 + AluY SINE Alu 1 296 -15 2194 86 28 3 chr15 59232687 59232977 -26462777 + AluSx SINE Alu 1 297 -15 264 306 67 79 chr15 59233228 59233571 -26462183 + L2 LINE L2 2350 2688 -626 1895 315 97 85 chr15 59234370 59234803 -26460951 - L2 LINE L2 -406 2908 2481 2335 87 0 3 chr15 59234803 59235092 -26460662 - AluSc SINE Alu -21 288 1 1895 315 97 85 chr15 59235092 59236168 -26459586 - L2 LINE L2 -833 2481 1382 315 250 116 30 chr15 59236878 59237043 -26458711 + MIR SINE MIR 31 212 -50 519 227 16 16 chr15 59237093 59237221 -26458533 - MSTC LTR MaLR -4 424 297 1161 146 0 0 chr15 59237221 59237392 -26458362 - AluSg/x SINE Alu -8 304 134 441 114 14 14 chr15 59237521 59237591 -26458163 - AluS SINE Alu -247 71 2 1868 110 53 30 chr15 59237594 59237893 -26457861 - MSTC LTR MaLR -122 306 1 2098 139 0 0 chr15 59237985 59238299 -26457455 - AluSx SINE Alu 0 314 1 445 308 112 62 chr15 59238310 59238648 -26457106 - L2 LINE L2 -9 3263 2909 2458 82 10 0 chr15 59238951 59239257 -26456497 - AluSc SINE Alu 0 309 1 475 239 7 14 chr15 59239266 59239281 -26456473 - L1MA10 LINE L1 0 6334 6320 3641 198 67 24 chr15 59239281 59240201 -26455553 - L1ME1 LINE L1 -5 6161 5197 242 81 0 0 chr15 59240209 59240246 -26455508 - L1MB8 LINE L1 0 6178 6142 24 0 0 0 chr15 59240280 59240304 -26455450 + AT_rich Low_complexity Low_complexity 1 24 0 2449 92 0 0 chr15 59240406 59240710 -26455044 - AluSq SINE Alu -9 304 1 2390 66 0 47 chr15 59240983 59241301 -26454453 + AluY SINE Alu 1 303 -8 2435 94 0 0 chr15 59241532 59241839 -26453915 + AluSq SINE Alu 1 307 -6 2308 53 0 46 chr15 59241999 59242301 -26453453 + AluY SINE Alu 21 308 -3 22 0 0 0 chr15 59242301 59242323 -26453431 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr15 59242451 59242471 -26453283 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 194 91 30 0 chr15 59242664 59242697 -26453057 + GA-rich Low_complexity Low_complexity 4 37 0 877 208 122 4 chr15 59243330 59243575 -26452179 - MER33 DNA MER1_type 0 324 51 340 277 42 42 chr15 59243908 59244027 -26451727 - MIR3 SINE MIR -36 172 54 2374 82 0 0 chr15 59244576 59244874 -26450880 - AluSg SINE Alu 0 299 2 33 35 0 17 chr15 59245003 59245023 -26450731 + AT_rich Low_complexity Low_complexity 1 20 -37 2082 105 0 31 chr15 59245023 59245317 -26450437 - AluSc SINE Alu -24 285 1 33 35 0 17 chr15 59245317 59245354 -26450400 + AT_rich Low_complexity Low_complexity 20 57 0 386 285 21 82 chr15 59245642 59245933 -26449821 + L1ME LINE L1 5550 5822 -299 886 167 14 0 chr15 59246351 59246519 -26449235 + AluJb SINE Alu 136 305 0 1419 267 114 26 chr15 59246570 59247152 -26448602 - L2 LINE L2 0 3313 2655 2399 89 0 0 chr15 59247152 59247456 -26448298 - AluY SINE Alu -7 304 1 1419 267 114 26 chr15 59247456 59247684 -26448070 - L2 LINE L2 -658 2655 2448 201 74 0 0 chr15 59247986 59248013 -26447741 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr15 59248243 59248271 -26447483 + AT_rich Low_complexity Low_complexity 1 28 0 319 286 41 0 chr15 59248285 59248383 -26447371 - MIR SINE MIR -108 154 53 234 318 16 0 chr15 59248439 59248502 -26447252 - L2 LINE L2 -49 3223 3160 285 140 0 0 chr15 59248824 59248881 -26446873 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 817 271 29 4 chr15 59248997 59249241 -26446513 - MIR SINE MIR -10 252 3 2115 109 31 0 chr15 59249251 59249544 -26446210 - AluSq SINE Alu -10 303 2 245 297 16 0 chr15 59250191 59250255 -26445499 - L2 LINE L2 -9 3263 3199 237 330 21 10 chr15 59250837 59250934 -26444820 - MIR SINE MIR -142 120 23 25 0 0 0 chr15 59252853 59252878 -26442876 + GC_rich Low_complexity Low_complexity 1 25 0 694 126 353 5 chr15 59253157 59253347 -26442407 - Tigger3(Golem) DNA MER2_type -3 3026 2771 454 170 170 0 chr15 59253358 59253452 -26442302 - Tigger3(Golem) DNA MER2_type -2915 114 5 22 0 0 0 chr15 59254101 59254123 -26441631 + AT_rich Low_complexity Low_complexity 1 22 0 802 213 142 0 chr15 59254961 59255200 -26440554 - MER33 DNA MER1_type -1 323 51 384 317 33 22 chr15 59255497 59255677 -26440077 - MIR3 SINE MIR -1 207 26 2135 138 0 0 chr15 59256812 59257117 -26438637 + AluSx SINE Alu 1 305 -7 298 271 0 0 chr15 59257130 59257215 -26438539 + L1ME LINE L1 5738 5822 -299 797 261 17 0 chr15 59257620 59257796 -26437958 + AluJb SINE Alu 121 299 -13 1074 299 150 20 chr15 59257840 59258619 -26437135 - L2 LINE L2 -1 3312 2448 36 91 0 0 chr15 59259220 59259319 -26436435 + AT_rich Low_complexity Low_complexity 1 99 0 360 264 33 33 chr15 59259328 59259449 -26436305 - MIR SINE MIR -108 154 34 264 327 99 0 chr15 59259454 59259555 -26436199 - L2 LINE L2 -2 3270 3160 471 271 30 24 chr15 59260108 59260274 -26435480 - MIR SINE MIR 0 262 96 1271 103 16 11 chr15 59260519 59260703 -26435051 + AluY SINE Alu 119 303 -8 295 258 11 11 chr15 59260710 59260799 -26434955 - MIR SINE MIR -171 91 3 21 0 0 0 chr15 59260846 59260867 -26434887 + AT_rich Low_complexity Low_complexity 1 21 0 2635 43 0 3 chr15 59260875 59261177 -26434577 + AluY SINE Alu 1 301 -10 211 313 16 0 chr15 59261820 59261884 -26433870 - L2 LINE L2 -9 3263 3199 2511 56 0 0 chr15 59262283 59262571 -26433183 + AluY SINE Alu 1 288 -23 746 255 81 47 chr15 59262613 59263175 -26432579 + L1ME LINE L1 5236 5811 -359 205 242 22 0 chr15 59263244 59263335 -26432419 + (TA)n Simple_repeat Simple_repeat 2 94 0 1391 131 9 31 chr15 59263399 59263628 -26432126 + AluSg/x SINE Alu 87 310 -2 2283 105 0 0 chr15 59264205 59264509 -26431245 + AluSx SINE Alu 1 304 -8 238 238 50 12 chr15 59264526 59264606 -26431148 + MER57A LTR ERV1 296 378 -25 310 248 80 32 chr15 59264834 59264959 -26430795 - L1ME4a LINE L1 -3 6118 5988 2312 125 154 3 chr15 59265337 59265714 -26430040 - LTR12 LTR ERV1 -228 486 53 230 269 0 0 chr15 59265714 59265766 -26429988 - LTR30 LTR ERV1 -670 52 1 462 268 31 16 chr15 59266106 59266233 -26429521 + MARNA DNA Mariner 271 399 -187 285 297 196 14 chr15 59266453 59266672 -26429082 - L3 LINE CR1 -158 1419 1161 249 246 231 23 chr15 59266676 59266752 -26429002 + MIR SINE MIR 51 110 -152 2012 129 38 6 chr15 59266752 59267093 -26428661 + L1MB3 LINE L1 5831 6182 -1 249 246 231 23 chr15 59267093 59267146 -26428608 + MIR SINE MIR 110 207 -55 1828 168 0 20 chr15 59267147 59267451 -26428303 + AluJb SINE Alu 1 298 -14 2142 120 3 3 chr15 59267455 59267754 -26428000 + AluSx SINE Alu 1 299 -13 3485 138 8 15 chr15 59267764 59268295 -26427459 + MER1A DNA MER1_type 1 527 0 2474 77 0 0 chr15 59268409 59268709 -26427045 + AluY SINE Alu 1 300 -11 810 173 8 0 chr15 59268843 59268970 -26426784 + FLAM_C SINE Alu 1 128 -5 746 325 107 60 chr15 59269517 59270569 -26425185 + L3 LINE CR1 194 1294 -283 315 299 25 51 chr15 59270956 59271113 -26424641 - MER112 DNA MER1_type -106 154 2 372 198 127 76 chr15 59271154 59271311 -26424443 - MER103 DNA DNA 0 166 2 4901 74 3 5 chr15 59271801 59272435 -26423319 - LTR10E LTR ERV1 0 633 1 266 212 40 81 chr15 59272435 59272534 -26423220 - Harlequin LTR ERV1 0 6649 6555 5733 254 61 21 chr15 59272539 59274071 -26421683 - Harlequin LTR ERV1 -759 5890 4298 1284 129 60 11 chr15 59274614 59274937 -26420817 - Harlequin LTR ERV1 -2674 2912 1901 262 156 22 0 chr15 59275587 59275632 -26420122 - Harlequin LTR ERV1 -5628 1021 976 1096 204 30 34 chr15 59275840 59276104 -26419650 - Harlequin LTR ERV1 -6360 289 27 4697 79 22 3 chr15 59276127 59276748 -26419006 - LTR10E LTR ERV1 0 633 1 2180 107 33 0 chr15 59276964 59277263 -26418491 + AluSg SINE Alu 1 309 -1 1624 109 16 24 chr15 59277668 59277916 -26417838 + AluY SINE Alu 1 246 -65 431 200 219 25 chr15 59277924 59278084 -26417670 - MIR SINE MIR -58 204 14 25 51 0 0 chr15 59279033 59279072 -26416682 + GC_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr15 59280277 59280301 -26415453 + AT_rich Low_complexity Low_complexity 1 24 0 1784 90 19 15 chr15 59280301 59280567 -26415187 - AluSx SINE Alu -45 267 1 2501 56 7 0 chr15 59281050 59281353 -26414401 - AluY SINE Alu -6 305 1 4504 109 186 20 chr15 59281868 59282841 -26412913 + pTR5 LTR ERV1 743 2021 -417 249 306 10 0 chr15 59282845 59282943 -26412811 + LTR30 LTR ERV1 544 642 -80 1596 99 0 5 chr15 59282946 59283168 -26412586 + pTR5 LTR ERV1 172 392 -2046 2251 77 0 74 chr15 59283297 59283622 -26412132 + AluSc SINE Alu 1 301 -8 225 333 156 15 chr15 59283799 59283934 -26411820 + MIR3 SINE MIR 28 181 -27 241 208 83 0 chr15 59284072 59284085 -26411669 - L2 LINE L2 -5 3308 3257 190 200 0 0 chr15 59284085 59284120 -26411634 - MIR SINE MIR -16 246 212 2195 92 3 13 chr15 59284168 59284473 -26411281 - AluSc SINE Alu -5 304 3 366 23 0 0 chr15 59284488 59284531 -26411223 + (CA)n Simple_repeat Simple_repeat 1 43 0 1637 252 126 39 chr15 59284544 59284661 -26411093 + L2 LINE L2 2387 2492 -821 2209 89 0 0 chr15 59284661 59284953 -26410801 - AluSc SINE Alu -17 292 1 1637 252 126 39 chr15 59284953 59285545 -26410209 + L2 LINE L2 2492 3197 -116 735 78 0 0 chr15 59285545 59285648 -26410106 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 1637 252 126 39 chr15 59285648 59285774 -26409980 + L2 LINE L2 3197 3311 -2 1709 132 15 7 chr15 59336127 59336400 -26359354 + AluSx SINE Alu 18 292 -20 664 201 25 44 chr15 59336807 59336966 -26358788 + Tigger2a DNA MER2_type 1 156 -278 634 214 24 0 chr15 59337150 59337276 -26358478 - FLAM_C SINE Alu -11 132 4 2162 113 3 10 chr15 59338053 59338353 -26357401 + AluSx SINE Alu 1 298 -14 1680 135 0 4 chr15 59338807 59339044 -26356710 - AluSq SINE Alu -77 236 1 2126 129 3 0 chr15 59339110 59339405 -26356349 + AluSq SINE Alu 1 296 -17 2320 101 0 3 chr15 59339513 59339810 -26355944 - AluSc SINE Alu -13 296 1 1019 96 0 22 chr15 59339816 59339951 -26355803 - AluSq/x SINE Alu -180 132 1 225 0 0 0 chr15 59339988 59340013 -26355741 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1624 128 101 8 chr15 59340018 59340276 -26355478 - AluSx SINE Alu -30 282 1 771 171 59 7 chr15 59340896 59341048 -26354706 + MER20 DNA MER1_type 60 219 0 574 174 0 134 chr15 59341048 59341149 -26354605 + MER58B DNA MER1_type 215 328 -2092 2204 164 19 40 chr15 59341149 59341570 -26354184 - MLT2D LTR ERVL 0 414 3 2345 101 10 0 chr15 59341571 59341868 -26353886 + AluSg SINE Alu 1 300 -10 574 174 0 134 chr15 59341868 59341910 -26353844 + MER58B DNA MER1_type 327 340 -1 231 152 45 15 chr15 59342186 59342252 -26353502 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 306 0 0 0 chr15 59342252 59342286 -26353468 + (GA)n Simple_repeat Simple_repeat 2 35 0 2243 123 3 0 chr15 59342800 59343109 -26352645 - AluSx SINE Alu -2 310 1 1596 159 35 17 chr15 59343785 59344074 -26351680 - AluJb SINE Alu -18 294 1 1690 214 139 14 chr15 59344257 59344831 -26350923 - L1MC4 LINE L1 -299 7743 7098 458 200 95 0 chr15 59344956 59345051 -26350703 + AluSg/x SINE Alu 179 282 -30 758 219 39 70 chr15 59345063 59345319 -26350435 + L1MC1 LINE L1 3183 3430 -2716 3573 220 23 36 chr15 59345327 59345615 -26350139 + L1MC1 LINE L1 4304 4594 -1552 2189 179 52 5 chr15 59345615 59346022 -26349732 + MSTB LTR MaLR 1 426 0 3573 220 23 36 chr15 59346022 59346718 -26349036 + L1MC1 LINE L1 4594 5298 -848 2270 98 7 0 chr15 59346718 59347015 -26348739 + AluY SINE Alu 1 299 -12 1948 122 20 14 chr15 59347018 59347312 -26348442 + AluSg SINE Alu 1 296 -14 3573 220 23 36 chr15 59347312 59347362 -26348392 + L1MC1 LINE L1 5300 5329 -817 2109 122 14 0 chr15 59347365 59347660 -26348094 + AluSp SINE Alu 1 299 -14 1447 111 31 4 chr15 59347662 59347887 -26347867 - L1MC/D LINE L1 -759 5585 5355 579 158 11 0 chr15 59347887 59347982 -26347772 - AluS SINE Alu -216 97 2 4089 164 37 1 chr15 59347984 59348715 -26347039 + L1MC1 LINE L1 5577 6333 0 2077 107 7 0 chr15 59349121 59349401 -26346353 - AluSx SINE Alu -6 306 25 472 125 0 0 chr15 59349403 59349467 -26346287 - AluS SINE Alu -247 65 2 2251 126 0 3 chr15 59349470 59349772 -26345982 - AluSx SINE Alu -11 301 1 2141 96 0 4 chr15 59349784 59350096 -26345658 - AluSg1 SINE Alu 0 311 1 890 211 103 9 chr15 59350335 59350558 -26345196 + MIR SINE MIR 8 251 -11 3531 184 32 85 chr15 59350761 59351083 -26344671 + L1ME1 LINE L1 5111 5449 -717 2277 105 0 10 chr15 59351083 59351387 -26344367 + AluSq SINE Alu 1 301 -12 3531 184 32 85 chr15 59351387 59352173 -26343581 + L1ME1 LINE L1 5449 6165 -1 1437 74 11 11 chr15 59352395 59352624 -26343130 + AluSg/x SINE Alu 95 323 0 336 239 73 28 chr15 59352838 59352947 -26342807 - L2 LINE L2 0 3272 3159 2143 99 23 26 chr15 59353051 59353353 -26342401 - AluSg SINE Alu -9 301 1 469 277 155 5 chr15 59353372 59353578 -26342176 - MIR SINE MIR 0 262 26 777 250 0 0 chr15 59353606 59353762 -26341992 + FRAM SINE Alu 1 156 -20 2358 49 28 3 chr15 59353790 59354077 -26341677 + AluY SINE Alu 3 296 -15 217 330 111 26 chr15 59354563 59354833 -26340921 - L2 LINE L2 -99 3173 2881 2143 87 0 17 chr15 59354970 59355316 -26340438 - AluSq SINE Alu 0 341 1 193 318 149 35 chr15 59355588 59355903 -26339851 - L2 LINE L2 -926 2388 2038 460 221 252 74 chr15 59355910 59356168 -26339586 + Charlie2 DNA MER1_type 19 322 -2540 883 204 102 66 chr15 59356187 59356491 -26339263 + Charlie2 DNA MER1_type 1946 2260 -602 1199 81 0 0 chr15 59356491 59356639 -26339115 + AluSq/x SINE Alu 1 148 -164 274 164 137 0 chr15 59356679 59356752 -26339002 + Charlie2 DNA MER1_type 2291 2373 -489 958 199 28 0 chr15 59357030 59357206 -26338548 + AluJb SINE Alu 121 301 -11 2397 70 7 3 chr15 59357214 59357515 -26338239 - AluY SINE Alu -9 302 1 240 274 0 77 chr15 59358551 59358579 -26337175 + L1M4 LINE L1 3357 3386 -2760 2336 100 3 10 chr15 59358579 59358888 -26336866 + AluSg SINE Alu 1 307 -3 240 274 0 77 chr15 59358888 59358976 -26336778 + L1M4 LINE L1 3386 3464 -2682 2356 106 0 0 chr15 59359787 59360089 -26335665 + AluSg SINE Alu 1 302 -8 3976 130 64 9 chr15 59360185 59360869 -26334885 - L1MB3 LINE L1 -1 6182 5461 2051 95 14 11 chr15 59360877 59361221 -26334533 - AluSx SINE Alu 0 345 1 2289 88 3 7 chr15 59361229 59361526 -26334228 - AluSc SINE Alu -13 296 1 26 0 0 0 chr15 59361718 59361744 -26334010 + AT_rich Low_complexity Low_complexity 1 26 0 1957 109 0 8 chr15 59361799 59362097 -26333657 + AluSx SINE Alu 21 316 0 25 0 0 0 chr15 59362114 59362139 -26333615 + AT_rich Low_complexity Low_complexity 1 25 0 1863 168 7 3 chr15 59362144 59362442 -26333312 + AluJo SINE Alu 5 303 -9 180 0 0 0 chr15 59362447 59362467 -26333287 + (TA)n Simple_repeat Simple_repeat 2 21 0 480 113 21 31 chr15 59362569 59362666 -26333088 + AluSp/q SINE Alu 201 296 -17 2891 176 16 13 chr15 59362669 59363216 -26332538 + L1MC3 LINE L1 5329 5877 -1908 902 194 17 11 chr15 59363217 59363392 -26332362 + AluJb SINE Alu 120 295 -17 833 122 37 4 chr15 59363394 59363533 -26332221 + L1PA13 LINE L1 6030 6164 -1 894 258 67 52 chr15 59363726 59363768 -26331986 + LTR33 LTR ERVL 2 42 -479 2085 137 7 0 chr15 59363768 59364075 -26331679 - AluSx SINE Alu -3 309 1 894 258 67 52 chr15 59364075 59364377 -26331377 + LTR33 LTR ERVL 42 351 -170 459 291 110 18 chr15 59364556 59364783 -26330971 + MIR SINE MIR 1 248 -14 405 307 127 19 chr15 59364844 59365222 -26330532 + L1ME4a LINE L1 5313 5731 -2077 842 151 0 6 chr15 59365232 59365391 -26330363 + GA-rich Low_complexity Low_complexity 2 159 0 265 294 0 0 chr15 59365391 59365476 -26330278 + L1ME4a LINE L1 5736 5820 -1988 244 219 61 61 chr15 59365485 59365567 -26330187 - MER91C DNA MER1_type 0 140 59 220 328 0 0 chr15 59365955 59366016 -26329738 + MER91B DNA MER1_type 136 196 0 1694 190 0 7 chr15 59366206 59366501 -26329253 - AluSx SINE Alu -19 293 1 234 267 130 40 chr15 59366708 59366955 -26328799 + L1ME4a LINE L1 5851 6119 -2 339 250 0 0 chr15 59367052 59367184 -26328570 + (TA)n Simple_repeat Simple_repeat 2 133 0 409 282 0 81 chr15 59367832 59367934 -26327820 - MER81 DNA DNA 0 114 21 2084 113 0 28 chr15 59367934 59368253 -26327501 + AluSx SINE Alu 1 311 0 409 282 0 81 chr15 59368253 59368273 -26327481 - MER81 DNA DNA -93 21 1 284 212 212 10 chr15 59368292 59368391 -26327363 + MIR SINE MIR 23 141 -67 2249 109 0 3 chr15 59369020 59369323 -26326431 - AluSx SINE Alu -10 302 1 419 254 101 0 chr15 59369323 59369461 -26326293 - L1M4 LINE L1 -1900 4246 4095 4776 130 71 59 chr15 59369461 59370896 -26324858 + pTR5 LTR ERV1 757 2438 0 3181 223 40 51 chr15 59370920 59371255 -26324499 - L1M4 LINE L1 -2018 4128 3791 2353 102 0 0 chr15 59371255 59371558 -26324196 - AluSg SINE Alu -7 303 1 189 0 0 0 chr15 59371558 59371579 -26324175 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1989 131 7 0 chr15 59371579 59371861 -26323893 - AluSx SINE Alu -28 284 1 3181 223 40 51 chr15 59371861 59372167 -26323587 - L1M4 LINE L1 -2353 3793 3497 2158 104 21 0 chr15 59372167 59372455 -26323299 - AluSg SINE Alu -16 294 1 3181 223 40 51 chr15 59372455 59372765 -26322989 - L1M4 LINE L1 -2649 3497 3185 2082 122 35 0 chr15 59372765 59373051 -26322703 - AluSx SINE Alu -16 296 1 745 154 0 23 chr15 59373051 59373181 -26322573 - AluSg/x SINE Alu -14 296 170 5911 129 68 84 chr15 59373181 59373473 -26322281 - L1MCa LINE L1 -5218 1208 913 1968 97 56 0 chr15 59373473 59373764 -26321990 + AluSg SINE Alu 1 306 0 5911 129 68 84 chr15 59373764 59374217 -26321537 - L1MCa LINE L1 -5513 913 486 1698 182 34 0 chr15 59374217 59374514 -26321240 + AluJb SINE Alu 1 307 -5 5911 129 68 84 chr15 59374514 59374993 -26320761 - L1MCa LINE L1 -5940 486 1 1123 257 129 55 chr15 59375119 59375156 -26320598 - LTR33 LTR ERVL -2 519 486 1900 176 0 3 chr15 59375156 59375468 -26320286 - AluJo SINE Alu -1 311 1 1123 257 129 55 chr15 59375468 59375886 -26319868 - LTR33 LTR ERVL -35 486 30 435 114 0 34 chr15 59376335 59376423 -26319331 + (TA)n Simple_repeat Simple_repeat 2 86 0 2433 77 0 6 chr15 59376679 59376990 -26318764 - AluY SINE Alu -2 309 1 1910 155 20 0 chr15 59377430 59377727 -26318027 + AluSg SINE Alu 1 303 -7 1070 197 55 18 chr15 59377856 59378074 -26317680 - AluJo SINE Alu -2 310 85 183 345 0 35 chr15 59378139 59378252 -26317502 - L2 LINE L2 -188 3084 2976 1092 208 58 46 chr15 59378430 59378611 -26317143 + Charlie1b DNA MER1_type 1 187 -2574 2222 96 0 7 chr15 59378611 59378903 -26316851 + AluSc SINE Alu 1 290 -19 1092 208 58 46 chr15 59378903 59378962 -26316792 + Charlie1b DNA MER1_type 187 244 -279 375 281 50 14 chr15 59379185 59379323 -26316431 + MLT1H LTR MaLR 5 172 -377 455 171 178 16 chr15 59379437 59379566 -26316188 + MLT1H LTR MaLR 398 547 -2 1059 134 45 63 chr15 59379624 59379667 -26316087 - MER20 DNA MER1_type 0 219 177 2299 43 6 77 chr15 59379667 59379990 -26315764 - AluY SINE Alu -11 300 1 1059 134 45 63 chr15 59379990 59380169 -26315585 - MER20 DNA MER1_type -42 177 1 315 257 79 21 chr15 59380196 59380336 -26315418 - MER5B DNA MER1_type -29 149 2 281 321 112 24 chr15 59380358 59380607 -26315147 - L2 LINE L2 -583 2731 2461 2415 94 0 0 chr15 59380618 59380927 -26314827 + AluSc SINE Alu 1 309 0 3731 157 17 6 chr15 59380927 59381437 -26314317 + L1MB8 LINE L1 5156 5677 -501 1708 173 21 10 chr15 59381437 59381726 -26314028 + AluJo SINE Alu 1 292 -20 3731 157 17 6 chr15 59381726 59381997 -26313757 + L1MB8 LINE L1 5677 5944 -234 410 219 0 0 chr15 59381997 59382070 -26313684 + FRAM/FAM SINE Alu 1 66 -110 825 107 11 183 chr15 59382079 59382172 -26313582 + L1MB8 LINE L1 5953 6060 -118 2138 127 0 3 chr15 59382172 59382479 -26313275 - AluSx SINE Alu -6 306 1 825 107 11 183 chr15 59382479 59382584 -26313170 + L1MB8 LINE L1 6060 6098 -80 1418 159 141 11 chr15 59382584 59382867 -26312887 - 7SLRNA srpRNA srpRNA 0 320 1 825 107 11 183 chr15 59382867 59382929 -26312825 + L1MB8 LINE L1 6098 6169 -9 267 316 216 0 chr15 59382932 59383103 -26312651 - L2 LINE L2 -864 2450 2243 219 244 0 0 chr15 59383114 59383155 -26312599 - L2 LINE L2 -13 3259 3219 252 211 149 26 chr15 59383220 59383334 -26312420 + L2 LINE L2 3182 3309 -4 187 189 94 0 chr15 59383346 59383399 -26312355 - MIR SINE MIR -71 191 134 198 270 0 14 chr15 59383683 59383757 -26311997 - MIR SINE MIR -50 212 140 * 270 176 206 0 chr15 59383747 59383815 -26311939 + L2 LINE L2 1839 1920 -1394 712 130 62 34 chr15 59383822 59383968 -26311786 + MER96B DNA MER1_type? 29 178 -239 2267 66 7 3 chr15 59385578 59385864 -26309890 + AluSc SINE Alu 1 287 -22 401 224 86 0 chr15 59386185 59386301 -26309453 + L1MA10 LINE L1 6207 6332 -2 304 320 124 16 chr15 59386565 59386759 -26308995 - L1ME LINE L1 -330 5840 5626 21 0 0 0 chr15 59387631 59387652 -26308102 + AT_rich Low_complexity Low_complexity 1 21 0 215 289 33 11 chr15 59387971 59388061 -26307693 + L2 LINE L2 2708 2799 -515 1173 128 113 60 chr15 59388106 59388324 -26307430 - MER33 DNA MER1_type -2283 302 64 2092 139 0 16 chr15 59388324 59388495 -26307259 - AluSx SINE Alu -8 304 139 2132 110 31 7 chr15 59388495 59388787 -26306967 - AluSx SINE Alu -13 299 1 2092 139 0 16 chr15 59388787 59388924 -26306830 - AluSx SINE Alu -173 139 1 1173 128 113 60 chr15 59388924 59388987 -26306767 - MER33 DNA MER1_type -2521 64 6 236 255 58 96 chr15 59389099 59389307 -26306447 - L1ME LINE L1 -451 5670 5471 258 207 0 0 chr15 59389508 59389566 -26306188 + (CA)n Simple_repeat Simple_repeat 2 59 0 1609 187 32 0 chr15 59389589 59389867 -26305887 - AluJb SINE Alu -24 288 2 180 0 0 0 chr15 59389939 59389959 -26305795 + (T)n Simple_repeat Simple_repeat 1 20 0 2219 130 3 0 chr15 59390474 59390781 -26304973 - AluSx SINE Alu -4 308 1 325 333 26 13 chr15 59390783 59390939 -26304815 - L1M4 LINE L1 -3061 3085 2928 250 314 0 0 chr15 59391391 59391461 -26304293 - L2 LINE L2 0 3272 3203 2253 93 0 7 chr15 59391758 59392060 -26303694 + AluSc SINE Alu 1 300 -9 686 179 27 30 chr15 59392357 59392505 -26303249 - MLT1G1 LTR MaLR 0 595 437 244 53 0 26 chr15 59392512 59392550 -26303204 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 184 367 129 12 chr15 59394490 59394730 -26301024 - L2 LINE L2 -10 3262 2995 2161 122 6 6 chr15 59394914 59395225 -26300529 + AluY SINE Alu 1 311 0 2227 115 3 10 chr15 59395321 59395635 -26300119 - AluSx SINE Alu 0 312 1 290 161 62 74 chr15 59395699 59395780 -26299974 - L1ME1 LINE L1 -1 6333 6097 836 143 8 8 chr15 59395798 59395931 -26299823 - AluJb SINE Alu -179 133 1 1657 186 11 104 chr15 59395937 59396059 -26299695 - L1ME2 LINE L1 -59 6105 5973 2062 115 26 30 chr15 59396059 59396363 -26299391 - AluSx SINE Alu -9 303 1 1657 186 11 104 chr15 59396363 59396462 -26299292 - L1ME2 LINE L1 -191 5973 5866 2151 117 7 3 chr15 59396462 59396761 -26298993 + AluSx SINE Alu 1 300 -12 1657 186 11 104 chr15 59396761 59397010 -26298744 - L1ME2 LINE L1 -298 5866 5678 320 212 80 101 chr15 59397047 59397207 -26298547 - MLT1G1 LTR MaLR -1 582 441 2274 90 3 0 chr15 59398064 59398352 -26297402 + AluSg SINE Alu 1 289 -21 1788 100 88 4 chr15 59398497 59398748 -26297006 + AluSc SINE Alu 27 298 -11 1128 264 43 19 chr15 59398854 59399271 -26296483 + L2 LINE L2 2243 2669 -645 1698 176 3 14 chr15 59399838 59400133 -26295621 - AluJo SINE Alu -20 292 1 2256 112 0 0 chr15 59400369 59400665 -26295089 + AluSx SINE Alu 1 296 -16 1010 148 19 65 chr15 59400924 59401075 -26294679 - L1MB3 LINE L1 -9 6174 6034 2277 92 7 0 chr15 59401075 59401368 -26294386 - AluSp SINE Alu -18 295 1 1010 148 19 65 chr15 59401368 59401432 -26294322 - L1MB3 LINE L1 -149 6034 5969 854 154 0 7 chr15 59401506 59401655 -26294099 - L1MB3 LINE L1 -216 5964 5817 1789 102 68 61 chr15 59401655 59401795 -26293959 + AluSx SINE Alu 1 139 -173 2257 124 0 3 chr15 59401795 59402109 -26293645 + AluSq SINE Alu 1 313 0 1789 102 68 61 chr15 59402109 59402262 -26293492 + AluSx SINE Alu 139 296 -16 2060 105 11 0 chr15 59402264 59402598 -26293156 + AluSc SINE Alu 1 337 0 183 156 0 0 chr15 59402732 59402764 -26292990 + (CA)n Simple_repeat Simple_repeat 2 33 0 404 335 42 13 chr15 59402779 59403018 -26292736 + L2 LINE L2 2731 2976 -338 500 248 51 13 chr15 59403033 59403190 -26292564 + L2 LINE L2 3101 3263 -50 469 236 45 32 chr15 59403201 59403358 -26292396 + MLT1K LTR MaLR 380 538 -50 257 201 24 46 chr15 59403379 59403455 -26292299 - MLT1I LTR MaLR -12 438 314 411 258 73 20 chr15 59404069 59404289 -26291465 + MIR SINE MIR 12 243 -19 325 234 152 21 chr15 59405136 59405281 -26290473 + MIR3 SINE MIR 32 195 -13 325 260 82 27 chr15 59405338 59405484 -26290270 + L1MC5 LINE L1 7760 7913 -48 2059 117 3 19 chr15 59406257 59406564 -26289190 - AluSx SINE Alu -10 302 1 441 185 49 0 chr15 59407077 59407158 -26288596 - MER58A DNA MER1_type -17 90 6 238 264 147 55 chr15 59407408 59407571 -26288183 - MER5A DNA MER1_type 0 189 1 405 242 11 0 chr15 59407587 59407682 -26288072 + MER5A DNA MER1_type 9 104 -85 350 304 82 39 chr15 59408303 59408510 -26287244 + LTR33 LTR ERVL 306 521 0 302 325 45 30 chr15 59408656 59408856 -26286898 + L3 LINE CR1 1366 1568 -9 2240 86 0 4 chr15 59409500 59409816 -26285938 - AluSg SINE Alu 0 315 1 224 275 143 0 chr15 59409828 59409919 -26285835 - L2 LINE L2 -1 3271 3168 312 179 154 13 chr15 59410176 59410254 -26285500 - MER81 DNA DNA -1 113 25 231 244 134 0 chr15 59410972 59411054 -26284700 - L2 LINE L2 -1 3271 3179 423 0 0 0 chr15 59411079 59411126 -26284628 + (CA)n Simple_repeat Simple_repeat 2 48 0 2245 79 10 10 chr15 59411154 59411457 -26284297 + AluY SINE Alu 1 303 -8 190 255 221 14 chr15 59411815 59411960 -26283794 - L2 LINE L2 -15 3298 3124 307 250 23 45 chr15 59412127 59412215 -26283539 - L2 LINE L2 0 3272 3187 499 267 55 30 chr15 59412220 59412422 -26283332 + L2 LINE L2 2871 3077 -195 250 65 22 22 chr15 59412605 59412651 -26283103 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 776 153 0 6 chr15 59412663 59412839 -26282915 + (TGGA)n Simple_repeat Simple_repeat 3 177 0 222 291 100 50 chr15 59412839 59413080 -26282674 - L2 LINE L2 -641 2673 2421 374 220 47 173 chr15 59413189 59413403 -26282351 - MLT1J2 LTR MaLR -5 445 259 732 272 143 41 chr15 59413487 59413880 -26281874 + LTR67 LTR ERVL 107 539 -18 2012 124 35 0 chr15 59414016 59414299 -26281455 + AluSx SINE Alu 2 294 -18 492 303 0 7 chr15 59414694 59414839 -26280915 - MER117 DNA MER1_type -51 146 3 343 344 6 25 chr15 59414870 59415033 -26280721 - MIR SINE MIR -56 206 47 2338 63 10 13 chr15 59415266 59415566 -26280188 - AluY SINE Alu -12 299 1 1576 125 152 8 chr15 59415592 59415848 -26279906 - AluSg1 SINE Alu -16 293 1 2142 113 0 0 chr15 59415864 59416146 -26279608 - AluSx SINE Alu -30 282 1 311 329 24 6 chr15 59416718 59416882 -26278872 + LTR67 LTR ERVL 384 550 -7 210 150 0 0 chr15 59417265 59417305 -26278449 + (TG)n Simple_repeat Simple_repeat 1 40 0 2001 172 97 35 chr15 59417351 59417740 -26278014 + MER74A LTR ERVL 50 455 -103 2469 86 0 0 chr15 59417740 59418044 -26277710 - AluY SINE Alu -7 304 1 2001 172 97 35 chr15 59418044 59418152 -26277602 + MER74A LTR ERVL 455 555 -3 3552 126 13 19 chr15 59418187 59418717 -26277037 - MER1A DNA MER1_type 0 527 1 220 377 9 0 chr15 59418717 59418823 -26276931 - L2 LINE L2 -8 3305 3199 2166 93 0 0 chr15 59418843 59419111 -26276643 + AluSx SINE Alu 12 279 -33 351 0 0 0 chr15 59419111 59419150 -26276604 + (CA)n Simple_repeat Simple_repeat 1 39 0 2250 105 0 0 chr15 59419169 59419455 -26276299 + AluSx SINE Alu 3 288 -24 23 54 0 0 chr15 59419486 59419523 -26276231 + AT_rich Low_complexity Low_complexity 1 37 0 2339 111 0 7 chr15 59419584 59419890 -26275864 + AluSx SINE Alu 1 304 -8 793 187 32 137 chr15 59419899 59420112 -26275642 + L1ME2 LINE L1 5824 6058 -106 2044 134 3 7 chr15 59420112 59420410 -26275344 + AluSx SINE Alu 1 297 -15 2359 101 0 0 chr15 59420410 59420708 -26275046 + AluSg SINE Alu 1 298 -12 793 187 32 137 chr15 59420708 59420873 -26274881 + L1ME2 LINE L1 6056 6163 -1 852 223 6 0 chr15 59420973 59421139 -26274615 + FRAM SINE Alu 1 167 -9 1964 141 10 7 chr15 59421170 59421474 -26274280 + AluSx SINE Alu 1 305 -7 501 207 117 42 chr15 59421583 59421796 -26273958 + L1ME2 LINE L1 5922 6150 -14 2180 96 38 7 chr15 59421870 59422162 -26273592 + AluSp SINE Alu 1 301 -12 2686 227 93 29 chr15 59422274 59422519 -26273235 + L1ME3 LINE L1 4373 4601 -1561 2238 110 3 3 chr15 59422519 59422820 -26272934 + AluSx SINE Alu 1 301 -11 2686 227 93 29 chr15 59422820 59424092 -26271662 + L1ME3 LINE L1 4601 6156 -6 1220 256 52 67 chr15 59424105 59424170 -26271584 + L1ME LINE L1 5031 5095 -1075 2442 87 0 3 chr15 59424170 59424481 -26271273 + AluY SINE Alu 1 310 -1 1220 256 52 67 chr15 59424481 59424851 -26270903 + L1ME LINE L1 5095 5458 -712 1677 131 120 0 chr15 59424851 59425118 -26270636 + AluSq SINE Alu 1 299 -14 1220 256 52 67 chr15 59425118 59425403 -26270351 + L1ME LINE L1 5458 5746 -424 838 153 8 0 chr15 59425437 59425568 -26270186 + FLAM_A SINE Alu 10 141 -1 1420 180 50 98 chr15 59425597 59425839 -26269915 - LTR10B LTR ERV1 0 547 295 2158 67 17 20 chr15 59425839 59426139 -26269615 + AluSc SINE Alu 1 299 -10 1420 180 50 98 chr15 59426139 59426378 -26269376 - LTR10B LTR ERV1 -252 295 1 2282 104 0 3 chr15 59426603 59426900 -26268854 + AluSq SINE Alu 1 296 -17 231 275 43 0 chr15 59427181 59427250 -26268504 + MER91A DNA MER1_type 97 168 -28 216 45 23 45 chr15 59427334 59427378 -26268376 + (TA)n Simple_repeat Simple_repeat 1 43 0 23 68 0 0 chr15 59427381 59427425 -26268329 + AT_rich Low_complexity Low_complexity 1 44 0 749 120 0 0 chr15 59427623 59427723 -26268031 - AluS SINE Alu -212 101 2 386 143 16 16 chr15 59427724 59427787 -26267967 - Charlie5 DNA MER1_type -2544 68 6 297 196 52 52 chr15 59427899 59427996 -26267758 - L1ME LINE L1 -451 5670 5574 22 35 0 0 chr15 59428009 59428038 -26267716 + AT_rich Low_complexity Low_complexity 1 29 0 441 260 236 8 chr15 59428055 59428297 -26267457 - L2 LINE L2 -1 3312 3016 2149 111 4 0 chr15 59428367 59428647 -26267107 - AluSx SINE Alu -31 281 1 1707 135 0 0 chr15 59428707 59428951 -26266803 + AluSx SINE Alu 59 302 -10 194 338 28 0 chr15 59429405 59429476 -26266278 + L2 LINE L2 3018 3090 -182 684 184 33 33 chr15 59429588 59429740 -26266014 - MER3 DNA MER1_type -16 193 42 438 193 216 0 chr15 59429810 59429991 -26265763 + MER33 DNA MER1_type 26 245 -79 1232 164 23 66 chr15 59430002 59430161 -26265593 - AluSx SINE Alu -18 294 153 218 56 28 0 chr15 59430161 59430197 -26265557 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1232 164 23 66 chr15 59430197 59430341 -26265413 - AluSx SINE Alu -159 153 4 737 144 0 82 chr15 59430354 59430414 -26265340 - AluJb SINE Alu -177 135 72 2242 100 0 0 chr15 59430414 59430705 -26265049 - AluSx SINE Alu -21 291 1 737 144 0 82 chr15 59430705 59430790 -26264964 - AluJb SINE Alu -240 72 2 365 188 29 0 chr15 59430801 59430870 -26264884 + MER33 DNA MER1_type 254 324 0 267 225 263 0 chr15 59430898 59430978 -26264776 + L2 LINE L2 3212 3312 -1 21 0 0 0 chr15 59431134 59431155 -26264599 + AT_rich Low_complexity Low_complexity 1 21 0 1752 124 88 11 chr15 59431641 59431941 -26263813 - AluSg SINE Alu 0 310 1 369 244 120 53 chr15 59435895 59436104 -26259650 - L1ME LINE L1 -373 5748 5526 21 0 0 0 chr15 59437232 59437253 -26258501 + AT_rich Low_complexity Low_complexity 1 21 0 386 337 139 23 chr15 59437974 59438283 -26257471 + L2 LINE L2 1948 2292 -1022 191 349 18 18 chr15 59438683 59438792 -26256962 - MIR SINE MIR -148 114 6 2442 84 0 3 chr15 59439722 59440032 -26255722 - AluSg SINE Alu -1 309 1 4811 125 35 52 chr15 59440085 59440924 -26254830 - L1PA16 LINE L1 -1 6165 5313 1499 50 0 0 chr15 59440924 59441104 -26254650 - L1PA3 LINE L1 -3 6152 5973 4811 125 35 52 chr15 59441104 59441250 -26254504 - L1PA16 LINE L1 -853 5313 5192 2522 50 3 0 chr15 59441250 59441552 -26254202 - AluY SINE Alu -8 303 1 4811 125 35 52 chr15 59441552 59441575 -26254179 - L1PA16 LINE L1 -974 5192 5170 2297 67 13 17 chr15 59441682 59441982 -26253772 - AluY SINE Alu -12 299 1 2011 149 7 0 chr15 59442020 59442329 -26253425 - AluSx SINE Alu -1 311 1 1056 154 205 48 chr15 59442381 59442652 -26253102 - MER44D DNA MER2_type -1882 609 382 2198 167 41 19 chr15 59442652 59443071 -26252683 - MSTA LTR MaLR 0 428 1 1056 154 205 48 chr15 59443071 59443092 -26252662 - MER44D DNA MER2_type -2109 382 1 1634 166 16 103 chr15 59443421 59443849 -26251905 - MER57A LTR ERV1 -9 394 4 322 286 57 5 chr15 59444308 59444508 -26251246 - MIR SINE MIR -65 197 20 2443 66 3 3 chr15 59445021 59445323 -26250431 - AluY SINE Alu -9 302 1 1441 142 188 0 chr15 59445659 59445898 -26249856 + AluSg SINE Alu 1 284 -26 1242 154 36 9 chr15 59446266 59446486 -26249268 + MER46A DNA MER2_type 2 227 -9 207 333 32 0 chr15 59446793 59446856 -26248898 - L2 LINE L2 -45 3227 3163 266 349 158 0 chr15 59447057 59447203 -26248551 + L2 LINE L2 343 511 -2803 427 255 38 9 chr15 59447323 59447429 -26248325 + L2 LINE L2 3205 3313 0 289 262 124 15 chr15 59447551 59447753 -26248001 - L1ME4a LINE L1 -4 6117 5894 690 146 85 0 chr15 59447822 59447952 -26247802 + MER7A DNA MER2_type 2 140 -206 2330 96 3 10 chr15 59448059 59448371 -26247383 - AluSp SINE Alu -3 310 1 681 233 100 12 chr15 59448383 59448632 -26247122 - L1MB7 LINE L1 -18 6166 5896 3117 214 29 7 chr15 59448683 59449444 -26246310 - L1MB4 LINE L1 -2 6178 5401 323 297 18 18 chr15 59449757 59449868 -26245886 - L1MC4 LINE L1 -14 8028 7918 759 217 49 12 chr15 59449950 59450179 -26245575 - L1MC4 LINE L1 -116 7692 7588 2145 105 10 7 chr15 59450317 59450611 -26245143 + AluSq SINE Alu 1 295 -18 413 215 231 31 chr15 59450799 59450929 -26244825 - MER3 DNA MER1_type -4 205 50 2046 108 37 0 chr15 59451292 59451588 -26244166 - AluSx SINE Alu -5 307 1 197 279 0 66 chr15 59452165 59452226 -26243528 - MIR SINE MIR -158 104 48 727 245 78 0 chr15 59452346 59452538 -26243216 + MIR SINE MIR 7 213 -49 258 301 98 8 chr15 59452659 59452782 -26242972 - L2 LINE L2 -986 2328 2195 234 0 0 0 chr15 59453193 59453219 -26242535 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr15 59453645 59453678 -26242076 + AT_rich Low_complexity Low_complexity 1 33 0 1756 181 0 10 chr15 59453679 59453971 -26241783 - AluJo SINE Alu -23 289 1 740 156 15 30 chr15 59454238 59454373 -26241381 + AluJo/FLAM SINE Alu 1 133 -169 704 135 0 0 chr15 59454374 59454478 -26241276 + AluSg/x SINE Alu 187 290 -19 2162 95 0 42 chr15 59454989 59455295 -26240459 - AluSg SINE Alu -15 295 3 2187 83 17 0 chr15 59455478 59455768 -26239986 + AluSq SINE Alu 1 295 -18 1378 141 33 0 chr15 59456259 59456500 -26239254 + MER1B DNA MER1_type 26 274 -65 646 214 50 79 chr15 59456853 59457133 -26238621 + MER1B DNA MER1_type 44 315 -24 2358 210 73 34 chr15 59457144 59457388 -26238366 - L1MC4 LINE L1 -77 7965 7732 1914 112 47 0 chr15 59457388 59457664 -26238090 - AluSq SINE Alu -11 302 14 2358 210 73 34 chr15 59457664 59458177 -26237577 - L1MC4 LINE L1 -310 7732 7179 442 346 111 27 chr15 59458235 59458623 -26237131 - L3 LINE CR1 -138 1439 1018 779 298 44 12 chr15 59458623 59458875 -26236879 + MIR SINE MIR 3 262 0 2218 110 0 0 chr15 59459604 59459903 -26235851 - AluSx SINE Alu -12 300 2 26 0 0 0 chr15 59459939 59459965 -26235789 + AT_rich Low_complexity Low_complexity 1 26 0 2008 119 7 18 chr15 59459970 59460285 -26235469 + AluSq SINE Alu 1 312 0 24 0 0 0 chr15 59461231 59461255 -26234499 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 59461346 59461368 -26234386 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr15 59461606 59461658 -26234096 + AT_rich Low_complexity Low_complexity 1 52 0 2023 138 3 0 chr15 59462223 59462521 -26233233 - AluSx SINE Alu -13 299 1 602 298 11 11 chr15 59463404 59463585 -26232169 + MIR SINE MIR 15 195 -67 2181 103 3 7 chr15 59463785 59464086 -26231668 + AluSg SINE Alu 1 300 -10 355 230 0 0 chr15 59464124 59464198 -26231556 - MER3 DNA MER1_type -95 114 41 2265 79 3 13 chr15 59464395 59464698 -26231056 - AluY SINE Alu -11 300 1 23 33 0 0 chr15 59464706 59464736 -26231018 + AT_rich Low_complexity Low_complexity 1 30 0 1590 102 154 23 chr15 59464751 59465017 -26230737 - AluSq SINE Alu -2 301 1 369 264 0 56 chr15 59465779 59465904 -26229850 + MIR SINE MIR 118 235 -27 1544 189 28 14 chr15 59466459 59466744 -26229010 - AluJo SINE Alu -23 289 1 2038 107 21 7 chr15 59466842 59467123 -26228631 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr15 59467138 59467166 -26228588 + (TCCA)n Simple_repeat Simple_repeat 2 29 0 186 224 0 35 chr15 59467770 59467828 -26227926 + MER5C DNA MER1_type 77 132 -192 297 228 30 119 chr15 59468844 59468901 -26226853 - L2 LINE L2 0 3313 3267 953 244 9 9 chr15 59468901 59469122 -26226632 + MER58A DNA MER1_type 1 221 -3 297 228 30 119 chr15 59469122 59469165 -26226589 - L2 LINE L2 -46 3267 3222 2155 112 0 7 chr15 59469532 59469827 -26225927 + AluSq SINE Alu 1 293 -20 348 170 104 47 chr15 59469828 59469934 -26225820 - Charlie1a DNA MER1_type -1137 318 207 684 197 0 7 chr15 59470006 59470143 -26225611 - Charlie1a DNA MER1_type -1244 211 76 2010 113 25 4 chr15 59470144 59470419 -26225335 + AluSq SINE Alu 1 281 -32 198 121 45 45 chr15 59470424 59470490 -26225264 + G-rich Low_complexity Low_complexity 4 69 0 300 241 17 0 chr15 59470496 59470554 -26225200 - Charlie1a DNA MER1_type -1396 59 1 678 217 227 0 chr15 59470555 59470753 -26225001 + MIR SINE MIR 18 260 -2 2245 98 27 0 chr15 59471329 59471626 -26224128 - AluSx SINE Alu -4 308 4 1087 215 206 11 chr15 59471807 59472380 -26223374 - L2 LINE L2 0 3313 2636 1715 214 109 25 chr15 59472399 59472885 -26222869 - MLT1F LTR MaLR -7 535 9 1055 218 183 27 chr15 59472885 59473469 -26222285 + L1M4 LINE L1 4345 5019 -1127 606 251 5 73 chr15 59473884 59474075 -26221679 + MER8 DNA MER2_type 1 178 -61 279 259 170 18 chr15 59474452 59474564 -26221190 - Charlie8 DNA MER1_type -2168 249 121 2049 111 7 3 chr15 59474579 59474867 -26220887 + AluSq SINE Alu 1 289 -24 2118 119 3 0 chr15 59475009 59475295 -26220459 - AluSg SINE Alu -23 287 1 519 294 105 17 chr15 59475808 59476046 -26219708 - Charlie8 DNA MER1_type -2157 260 2 395 272 175 29 chr15 59476733 59476939 -26218815 - MIR SINE MIR -10 252 17 180 0 0 0 chr15 59477605 59477625 -26218129 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 688 269 25 5 chr15 59477640 59477837 -26217917 + MIR SINE MIR 61 261 -1 469 232 30 77 chr15 59478644 59478812 -26216942 - MER106B DNA MER1_type -4 1055 896 1739 188 144 134 chr15 59478926 59479830 -26215924 - Charlie1 DNA MER1_type -59 2702 1808 1951 126 7 3 chr15 59479830 59480123 -26215631 - AluYa5 SINE Alu -17 294 1 1739 188 144 134 chr15 59480123 59480536 -26215218 - Charlie1 DNA MER1_type -953 1808 66 185 206 29 0 chr15 59480578 59480612 -26215142 - MIR SINE MIR -183 79 45 274 167 15 15 chr15 59480636 59480702 -26215052 + (TA)n Simple_repeat Simple_repeat 1 66 0 1747 100 8 15 chr15 59480723 59480982 -26214772 - AluSg SINE Alu -12 298 42 282 139 167 0 chr15 59481016 59481088 -26214666 + L1M4 LINE L1 3650 3733 -2413 192 200 0 0 chr15 59481153 59481193 -26214561 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr15 59481874 59481912 -26213842 + AT_rich Low_complexity Low_complexity 1 38 0 268 284 104 51 chr15 59482063 59482458 -26213296 - L1ME4a LINE L1 -209 5912 5497 1274 163 109 57 chr15 59486221 59486504 -26209250 + AluJo SINE Alu 1 298 -14 2574 54 0 0 chr15 59486753 59487048 -26208706 + AluY SINE Alu 1 295 -16 201 283 0 0 chr15 59487536 59487589 -26208165 + (TA)n Simple_repeat Simple_repeat 1 53 0 * 209 213 21 0 chr15 59487551 59487598 -26208156 + (TATG)n Simple_repeat Simple_repeat 4 51 0 184 270 90 0 chr15 59488435 59488524 -26207230 + MIR SINE MIR 101 197 -65 268 332 104 26 chr15 59488605 59488798 -26206956 + L3 LINE CR1 1369 1576 -1 3870 187 81 22 chr15 59488923 59489432 -26206322 + L1MB7 LINE L1 4672 5150 -1034 1867 146 31 14 chr15 59489432 59489720 -26206034 + AluJb SINE Alu 1 293 -19 3870 187 81 22 chr15 59489720 59489907 -26205847 + L1MB7 LINE L1 5150 5325 -859 2289 110 3 7 chr15 59489907 59490217 -26205537 + AluSq SINE Alu 1 309 -4 3870 187 81 22 chr15 59490217 59490932 -26204822 + L1MB7 LINE L1 5325 6162 -22 396 160 40 0 chr15 59491727 59491802 -26203952 - L2 LINE L2 -45 3268 3191 421 337 92 56 chr15 59492180 59492762 -26202992 - L2 LINE L2 -4 3268 2657 357 210 151 0 chr15 59494227 59494346 -26201408 + MIR SINE MIR 125 261 -1 14858 125 59 46 chr15 59494736 59495781 -26199973 + Tigger2 DNA MER2_type 1 1031 -1687 2212 121 3 10 chr15 59495781 59496095 -26199659 - AluSx SINE Alu 0 312 1 14858 125 59 46 chr15 59496095 59496589 -26199165 + Tigger2 DNA MER2_type 1031 1517 -1201 2134 116 0 7 chr15 59496589 59496890 -26198864 - AluSq SINE Alu -14 299 1 14858 125 59 46 chr15 59496890 59498031 -26197723 + Tigger2 DNA MER2_type 1517 2718 0 220 204 82 0 chr15 59498066 59498115 -26197639 - MIR SINE MIR -4 258 206 806 152 8 23 chr15 59498256 59498388 -26197366 + FLAM_C SINE Alu 4 133 0 1775 166 14 7 chr15 59498443 59498738 -26197016 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr15 59498741 59498770 -26196984 + AT_rich Low_complexity Low_complexity 1 29 0 2229 117 0 0 chr15 59498784 59499082 -26196672 + AluSc SINE Alu 1 298 -11 357 219 193 0 chr15 59499487 59499606 -26196148 - MIR SINE MIR -108 154 13 595 283 130 43 chr15 59501503 59502577 -26193177 + L1ME3 LINE L1 3821 5008 -1138 1882 114 75 4 chr15 59502627 59502908 -26192846 + AluSg SINE Alu 1 301 -9 592 293 57 48 chr15 59503107 59503260 -26192494 + L1ME3 LINE L1 5528 5678 -484 2185 123 0 0 chr15 59503260 59503560 -26192194 + AluSg SINE Alu 1 300 -10 592 293 57 48 chr15 59503560 59503720 -26192034 + L1ME3 LINE L1 5678 5844 -318 2215 69 0 24 chr15 59503888 59504176 -26191578 - AluY SINE Alu -30 281 1 2352 90 3 3 chr15 59504178 59504478 -26191276 - AluSq SINE Alu -13 300 1 2740 135 70 12 chr15 59505158 59505641 -26190113 - MER9 LTR ERVK 0 511 1 2468 237 108 46 chr15 59505844 59506014 -26189740 + L1MC2 LINE L1 4236 4394 -1752 2240 110 0 10 chr15 59506014 59506322 -26189432 + AluSc SINE Alu 3 307 -2 2468 237 108 46 chr15 59506322 59507228 -26188526 + L1MC2 LINE L1 4394 5378 -768 644 186 0 0 chr15 59507238 59507340 -26188414 + FLAM_A SINE Alu 20 121 -21 1905 145 64 0 chr15 59507386 59507730 -26188024 + L1MC2 LINE L1 5670 6035 -309 * 2331 126 0 42 chr15 59507729 59507892 -26187862 + L1 LINE L1 4363 4531 -1615 2331 78 10 13 chr15 59507892 59508200 -26187554 + AluSp SINE Alu 1 307 -6 2331 126 0 42 chr15 59508200 59508442 -26187312 + L1 LINE L1 4531 4751 -1395 1383 189 19 35 chr15 59508442 59508702 -26187052 + AluJb SINE Alu 1 256 -56 198 91 0 0 chr15 59509132 59509165 -26186589 + (G)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr15 59509428 59509451 -26186303 + AT_rich Low_complexity Low_complexity 1 23 0 225 83 0 0 chr15 59510922 59510958 -26184796 + (A)n Simple_repeat Simple_repeat 1 36 0 2944 72 72 5 chr15 59511569 59511970 -26183784 - MLT2A1 LTR ERVL -16 428 1 1304 170 0 0 chr15 59512267 59512473 -26183281 - Tigger3(Golem) DNA MER2_type -1 3028 2823 1446 116 43 0 chr15 59512506 59512713 -26183041 + AluYb8 SINE Alu 1 216 -102 476 220 9 9 chr15 59513604 59513713 -26182041 + MIR SINE MIR 37 145 -63 21 0 0 0 chr15 59513725 59513746 -26182008 + AT_rich Low_complexity Low_complexity 1 21 0 507 299 30 0 chr15 59513965 59514099 -26181655 + MIR SINE MIR 55 192 -70 371 260 188 13 chr15 59515018 59515172 -26180582 + MER5A DNA MER1_type 9 189 0 233 309 128 23 chr15 59515293 59515597 -26180157 - L1ME4a LINE L1 -74 6047 5712 1445 242 47 40 chr15 59516879 59517011 -26178743 - LTR33 LTR ERVL -8 513 383 1671 169 3 45 chr15 59517011 59517324 -26178430 + AluJo SINE Alu 6 305 -7 1445 242 47 40 chr15 59517324 59517638 -26178116 - LTR33 LTR ERVL -138 383 64 372 268 10 0 chr15 59518164 59518261 -26177493 + MER5A DNA MER1_type 9 106 -83 513 318 68 20 chr15 59518286 59518538 -26177216 - ERVL LTR ERVL -629 5135 4872 1934 151 117 14 chr15 59518582 59518934 -26176820 + MSTD LTR MaLR 1 388 -8 1316 291 59 32 chr15 59518964 59519459 -26176295 - ERVL LTR ERVL -1329 4435 3928 1624 322 40 12 chr15 59519464 59520113 -26175641 - ERVL LTR ERVL -2487 3277 2611 548 263 82 6 chr15 59520159 59520330 -26175424 - MER5A DNA MER1_type -5 184 1 1136 271 50 12 chr15 59520339 59520679 -26175075 - ERVL LTR ERVL -3190 2574 2222 895 221 53 34 chr15 59520910 59521173 -26174581 - LTR33 LTR ERVL -243 278 11 240 267 17 0 chr15 59522009 59522069 -26173685 + MIR SINE MIR 45 105 -103 1552 211 80 139 chr15 59522126 59522916 -26172838 + Zaphod DNA AcHobo 1 715 -3316 785 182 0 0 chr15 59522916 59523048 -26172706 + FLAM_A SINE Alu 1 132 -1 1552 211 80 139 chr15 59523048 59523316 -26172438 + Zaphod DNA AcHobo 715 997 -3034 1131 224 107 53 chr15 59523304 59523715 -26172039 + Zaphod DNA AcHobo 3598 4030 -1 * 230 296 160 16 chr15 59523757 59523882 -26171872 - L2 LINE L2 0 3313 3171 1961 161 0 6 chr15 59524399 59524710 -26171044 + AluJb SINE Alu 2 310 -2 857 207 86 128 chr15 59526201 59526655 -26169099 + MLT1J LTR MaLR 1 435 -76 1082 233 137 23 chr15 59526655 59527042 -26168712 + L2 LINE L2 2883 3313 0 1622 204 86 3 chr15 59527429 59527765 -26167989 + MLT2D LTR ERVL 1 374 -40 198 71 0 0 chr15 59527765 59527793 -26167961 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1622 204 86 3 chr15 59527793 59527838 -26167916 + MLT2D LTR ERVL 374 414 0 2179 130 36 28 chr15 59528512 59528873 -26166881 + THE1B LTR MaLR 1 364 0 645 307 55 9 chr15 59528928 59529146 -26166608 + MIR SINE MIR 33 260 -2 208 362 95 0 chr15 59529152 59529257 -26166497 + MIR SINE MIR 74 188 -74 336 291 18 9 chr15 59529473 59529583 -26166171 - L2 LINE L2 -235 3037 2927 803 251 64 5 chr15 59530437 59530656 -26165098 + MIR SINE MIR 10 241 -21 378 312 47 6 chr15 59531605 59531812 -26163942 + MIR SINE MIR 35 249 -13 1166 209 194 25 chr15 59532038 59532439 -26163315 + MLT1D LTR MaLR 37 505 0 1076 102 0 14 chr15 59532479 59532626 -26163128 + AluSg/x SINE Alu 152 296 -16 406 268 31 16 chr15 59532629 59532756 -26162998 - MIR SINE MIR -124 138 10 2633 226 38 60 chr15 59535069 59535488 -26160266 + L1ME3A LINE L1 5350 5777 -393 2519 47 3 17 chr15 59535488 59535788 -26159966 + AluY SINE Alu 1 296 -15 2633 226 38 60 chr15 59535788 59536155 -26159599 + L1ME3A LINE L1 5777 6118 -52 2071 117 0 7 chr15 59536155 59536436 -26159318 - AluJo SINE Alu -11 301 23 2633 226 38 60 chr15 59536436 59536483 -26159271 + L1ME3A LINE L1 6118 6165 -5 595 269 7 0 chr15 59537000 59537145 -26158609 - MER117 DNA MER1_type 0 197 52 192 324 148 0 chr15 59537347 59537455 -26158299 - L3 LINE CR1 -163 1414 1291 372 309 18 0 chr15 59537733 59537843 -26157911 + MIR3 SINE MIR 47 158 -50 2214 112 6 16 chr15 59538060 59538374 -26157380 + AluSp SINE Alu 1 311 -2 578 265 56 11 chr15 59538496 59538694 -26157060 - MIR SINE MIR -25 237 34 191 329 105 13 chr15 59538919 59539071 -26156683 + L3 LINE CR1 1405 1570 -7 238 290 0 29 chr15 59539845 59539914 -26155840 - MER113 DNA MER1_type? 0 521 455 313 189 78 22 chr15 59539942 59540032 -26155722 - MER113 DNA MER1_type? -364 157 63 502 239 206 23 chr15 59541685 59541903 -26153851 + MIR SINE MIR 4 261 -1 191 255 149 21 chr15 59541926 59542020 -26153734 - MIR SINE MIR -77 131 26 1913 154 0 3 chr15 59542615 59542927 -26152827 + AluJb SINE Alu 1 311 -1 1647 32 0 0 chr15 59542927 59543117 -26152637 - L1PA4 LINE L1 -208 5947 5758 1428 41 0 0 chr15 59543117 59543280 -26152474 + L1PA4 LINE L1 5984 6152 -3 42 0 0 0 chr15 59543280 59543322 -26152432 + AT_rich Low_complexity Low_complexity 1 42 0 1039 166 80 0 chr15 59544332 59544531 -26151223 + L1MD1 LINE L1 6028 6242 0 2221 93 0 0 chr15 59544544 59544844 -26150910 + AluY SINE Alu 1 300 -11 414 239 309 5 chr15 59545181 59545369 -26150385 - MIR SINE MIR -5 257 13 21 71 0 0 chr15 59547203 59547245 -26148509 + AT_rich Low_complexity Low_complexity 1 42 0 464 139 0 14 chr15 59547545 59547617 -26148137 - AluS SINE Alu -240 72 2 2987 211 24 22 chr15 59547620 59548250 -26147504 + MER82 DNA MER2_type 23 653 0 668 88 0 0 chr15 59548796 59548887 -26146867 + L1MB3 LINE L1 5742 5832 -351 2271 100 0 0 chr15 59548887 59549188 -26146566 + AluSx SINE Alu 1 301 -11 873 231 220 31 chr15 59549211 59549566 -26146188 + MLT1D LTR MaLR 84 505 0 395 281 51 56 chr15 59549566 59549784 -26145970 + L1M4 LINE L1 4957 5174 -972 2359 66 3 0 chr15 59549784 59550088 -26145666 + AluY SINE Alu 1 305 -6 395 281 51 56 chr15 59550088 59550282 -26145472 + L1M4 LINE L1 5174 5367 -779 1252 152 0 45 chr15 59550285 59550509 -26145245 + AluJb SINE Alu 1 214 -98 23 68 0 0 chr15 59551135 59551179 -26144575 + AT_rich Low_complexity Low_complexity 1 44 0 2165 76 0 63 chr15 59551381 59551560 -26144194 - AluSg SINE Alu -14 296 144 2173 104 3 0 chr15 59551560 59551859 -26143895 - AluSx SINE Alu -12 300 1 2165 76 0 63 chr15 59551859 59551995 -26143759 - AluSg SINE Alu -166 144 1 225 154 0 0 chr15 59552531 59552570 -26143184 + (TG)n Simple_repeat Simple_repeat 1 39 0 2444 153 76 15 chr15 59552570 59553046 -26142708 + MLT1D LTR MaLR 1 505 0 490 288 112 30 chr15 59553047 59553425 -26142329 - L1ME4a LINE L1 -157 5964 5552 230 333 12 0 chr15 59553852 59553933 -26141821 + MIR SINE MIR 36 117 -91 318 248 51 51 chr15 59554239 59554356 -26141398 + MIR SINE MIR 81 197 -65 907 115 8 15 chr15 59557732 59557862 -26137892 + AluJo/FLAM SINE Alu 1 129 -173 1988 95 33 0 chr15 59557863 59558136 -26137618 - AluSx SINE Alu -17 295 14 312 314 106 55 chr15 59558176 59558412 -26137342 + MIR SINE MIR 2 249 -13 227 310 42 0 chr15 59559337 59559408 -26136346 - L3 LINE CR1 -85 1492 1419 327 260 118 24 chr15 59560362 59560489 -26135265 + MIR3 SINE MIR 19 157 -51 3858 177 60 51 chr15 59560637 59561582 -26134172 + LTR13 LTR ERVK 1 954 0 686 235 69 16 chr15 59561582 59561785 -26133969 + MIR SINE MIR 31 241 -21 577 289 170 27 chr15 59561785 59562155 -26133599 - L2 LINE L2 -4 3268 2846 221 200 163 25 chr15 59563747 59563827 -26131927 - MIR SINE MIR -131 131 41 462 36 0 0 chr15 59563877 59563933 -26131821 + (CACTC)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr15 59564125 59564154 -26131600 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 59564550 59564571 -26131183 + AT_rich Low_complexity Low_complexity 1 21 0 255 239 9 80 chr15 59564586 59564699 -26131055 - MIR SINE MIR -61 147 43 538 137 130 27 chr15 59564970 59565116 -26130638 + L1ME4a LINE L1 5959 6119 -2 830 169 27 14 chr15 59566405 59566553 -26129201 - FRAM SINE Alu -25 151 2 213 284 116 32 chr15 59566894 59566989 -26128765 + MIR SINE MIR 88 190 -72 383 271 21 56 chr15 59567186 59567330 -26128424 - MIR SINE MIR -42 220 82 1763 94 94 8 chr15 59567845 59568112 -26127642 + AluSx SINE Alu 17 306 -6 207 0 0 0 chr15 59568112 59568135 -26127619 + (TA)n Simple_repeat Simple_repeat 1 23 0 321 176 0 0 chr15 59568135 59568186 -26127568 - L1MC4 LINE L1 -1339 6703 6653 3233 140 31 32 chr15 59568198 59568591 -26127163 - L1MB3 LINE L1 -10 6173 5780 234 0 0 0 chr15 59568591 59568617 -26127137 + (TA)n Simple_repeat Simple_repeat 1 26 0 3233 140 31 32 chr15 59568617 59568810 -26126944 - L1MB3 LINE L1 -403 5780 5588 510 270 90 54 chr15 59568929 59569428 -26126326 - L1ME4a LINE L1 -105 6016 5495 2175 184 69 11 chr15 59569428 59569864 -26125890 + LOR1b LTR ERV1 1 461 0 510 270 90 54 chr15 59569864 59569909 -26125845 - L1ME4a LINE L1 -626 5495 5453 382 291 33 52 chr15 59569944 59570154 -26125600 - L1MC4 LINE L1 -11 8031 7826 361 200 67 0 chr15 59570184 59570274 -26125480 - L1ME2 LINE L1 0 6164 6069 501 191 15 22 chr15 59570282 59570418 -26125336 - L1ME4a LINE L1 -2383 5425 5291 225 213 33 16 chr15 59570461 59570522 -26125232 + T-rich Low_complexity Low_complexity 3 64 0 535 296 89 22 chr15 59570616 59570940 -26124814 - HAL1b LINE L1 -437 911 566 * 603 294 104 12 chr15 59570938 59571526 -26124228 - L1MEc LINE L1 -4898 1498 857 340 286 58 50 chr15 59572074 59572315 -26123439 + L1MC4a LINE L1 5696 5938 -1870 362 309 37 22 chr15 59572685 59572821 -26122933 - MIR3 SINE MIR -48 160 23 1415 214 92 17 chr15 59574657 59575016 -26120738 - MLT1B LTR MaLR -4 386 1 1095 259 57 13 chr15 59575881 59576263 -26119491 + LTR16A1 LTR ERVL 87 454 -3 1053 279 3 28 chr15 59576461 59576744 -26119010 + MLT1D-int LTR MaLR 612 887 -484 1536 207 152 32 chr15 59576824 59577264 -26118490 + MLT1D-int LTR MaLR 877 1369 -2 1137 183 118 52 chr15 59577268 59577574 -26118180 + MLT1D LTR MaLR 3 328 -177 371 278 48 82 chr15 59577576 59577915 -26117839 + HAL1b LINE L1 373 674 -674 26 0 0 0 chr15 59578150 59578176 -26117578 + AT_rich Low_complexity Low_complexity 1 26 0 474 306 100 30 chr15 59578305 59579037 -26116717 + L1M4 LINE L1 2677 3459 -2687 218 227 15 136 chr15 59580481 59580549 -26115205 - MIR3 SINE MIR -3 205 158 1941 125 0 14 chr15 59580549 59580860 -26114894 - AluSx SINE Alu 0 307 1 218 227 15 136 chr15 59580860 59580922 -26114832 - MIR3 SINE MIR -50 158 90 819 291 74 87 chr15 59581238 59581467 -26114287 - L1 LINE L1 -2310 3836 3606 1628 184 0 0 chr15 59581467 59581792 -26113962 - AluJb SINE Alu 0 325 1 819 291 74 87 chr15 59581792 59582093 -26113661 - L1 LINE L1 -2540 3606 3314 1719 155 7 17 chr15 59582093 59582384 -26113370 - AluJo SINE Alu -24 288 1 819 291 74 87 chr15 59582384 59582567 -26113187 - L1 LINE L1 -2832 3314 3130 25 0 0 0 chr15 59582813 59582838 -26112916 + AT_rich Low_complexity Low_complexity 1 25 0 1700 136 3 45 chr15 59582881 59583190 -26112564 - AluJo SINE Alu -16 296 1 963 293 116 34 chr15 59583201 59584044 -26111710 - L1ME3 LINE L1 -223 5939 5166 740 11 11 0 chr15 59584044 59584133 -26111621 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 963 293 116 34 chr15 59584133 59584825 -26110929 - L1ME3 LINE L1 -996 5166 4231 2469 37 0 3 chr15 59584825 59585153 -26110601 - AluY SINE Alu 0 327 1 963 293 116 34 chr15 59585153 59585373 -26110381 - L1ME3 LINE L1 -1931 4231 4030 838 188 0 0 chr15 59585385 59585539 -26110215 + FRAM SINE Alu 5 158 -18 349 299 81 48 chr15 59585556 59586098 -26109656 - L1 LINE L1 -3000 3146 2587 677 259 44 44 chr15 59586149 59586535 -26109219 - L1MC5 LINE L1 -38 7923 7538 2218 190 90 52 chr15 59586873 59587015 -26108739 - L1ME3 LINE L1 -171 5991 5856 1797 119 80 3 chr15 59587015 59587301 -26108453 - AluSp SINE Alu -5 308 1 2218 190 90 52 chr15 59587301 59587758 -26107996 - L1ME3 LINE L1 -306 5856 5369 1130 268 143 21 chr15 59587816 59588334 -26107420 + MLT1G LTR MaLR 10 590 0 1258 210 55 27 chr15 59588334 59588701 -26107053 - L1ME3 LINE L1 -1313 4833 4457 1768 148 3 0 chr15 59588704 59588987 -26106767 - AluSx SINE Alu -28 284 1 274 283 62 94 chr15 59589000 59589513 -26106241 - HAL1 LINE L1 -857 1650 1154 6027 121 41 27 chr15 59591436 59592415 -26103339 - Tigger1 DNA MER2_type -4 2414 1422 1044 159 110 75 chr15 59592520 59592578 -26103176 + MER46A DNA MER2_type 1 55 -2676 2091 97 0 3 chr15 59592578 59592867 -26102887 - AluSg1 SINE Alu -19 290 3 1044 159 110 75 chr15 59592867 59593035 -26102719 + MER46A DNA MER2_type 55 235 -1 291 256 37 0 chr15 59593232 59593314 -26102440 + MER5C DNA MER1_type 39 123 -201 212 224 0 52 chr15 59593428 59593486 -26102268 + MER5C DNA MER1_type 254 308 -16 274 108 0 0 chr15 59594314 59594351 -26101403 - Alu SINE Alu -264 37 1 956 211 118 10 chr15 59594360 59594664 -26101090 - L1ME3 LINE L1 -2845 3301 2965 1982 130 0 3 chr15 59594716 59595016 -26100738 + AluSx SINE Alu 1 299 -13 316 220 0 121 chr15 59595016 59595107 -26100647 - L1ME3 LINE L1 -3271 2875 2796 234 91 0 0 chr15 59595331 59595364 -26100390 + (A)n Simple_repeat Simple_repeat 1 33 0 471 283 26 98 chr15 59596790 59596883 -26098871 + MIR SINE MIR 17 115 -147 2155 91 3 0 chr15 59596883 59597180 -26098574 - AluSg1 SINE Alu -11 298 1 471 283 26 98 chr15 59597180 59597351 -26098403 + MIR SINE MIR 115 262 0 2081 126 0 0 chr15 59598418 59598719 -26097035 - AluSx SINE Alu -11 301 1 284 333 10 0 chr15 59598896 59598995 -26096759 + MIR SINE MIR 21 120 -142 185 250 184 13 chr15 59599506 59599582 -26096172 + L2 LINE L2 2232 2320 -994 775 273 16 5 chr15 59599723 59599910 -26095844 + MIR SINE MIR 63 251 -11 890 224 76 9 chr15 59600139 59600362 -26095392 + MER58 DNA MER1_type 37 274 -67 4981 140 66 50 chr15 59600374 59600441 -26095313 + Tigger3b DNA MER2_type 1 65 -2963 1991 132 0 0 chr15 59600441 59600737 -26095017 + AluSx SINE Alu 1 296 -16 4981 140 66 50 chr15 59600737 59600994 -26094760 + Tigger3b DNA MER2_type 65 316 -2712 2275 97 0 0 chr15 59600994 59601305 -26094449 + AluY SINE Alu 1 311 0 4981 140 66 50 chr15 59601305 59601670 -26094084 + Tigger3b DNA MER2_type 316 674 -2354 2162 116 0 3 chr15 59601670 59601973 -26093781 + AluSx SINE Alu 3 304 -8 4981 140 66 50 chr15 59601973 59602298 -26093456 + Tigger3b DNA MER2_type 674 1033 -198 3054 60 80 7 chr15 59602559 59602973 -26092781 + MLT2A1 LTR ERVL 1 444 0 541 179 56 74 chr15 59603130 59603215 -26092539 + MER69 DNA AcHobo 2368 2450 -76 2228 88 3 0 chr15 59603215 59603510 -26092244 - AluSp SINE Alu -13 300 5 541 179 56 74 chr15 59603510 59603586 -26092168 + MER69 DNA AcHobo 2450 2526 0 348 276 8 57 chr15 59605176 59605299 -26090455 - MIR SINE MIR -41 221 105 441 249 89 95 chr15 59605829 59606167 -26089587 + MER102b DNA MER1_type 4 339 -2 289 196 0 0 chr15 59607954 59608005 -26087749 - MER5A DNA MER1_type -114 75 25 569 314 31 31 chr15 59608151 59608377 -26087377 + MIR SINE MIR 8 233 -29 845 267 78 26 chr15 59608608 59608947 -26086807 - MLT1H1 LTR MaLR -51 544 12 263 301 12 108 chr15 59609948 59610114 -26085640 - MER5A DNA MER1_type 0 189 40 408 320 34 51 chr15 59610186 59610420 -26085334 - MIR SINE MIR -11 251 22 463 254 25 17 chr15 59611787 59611905 -26083849 + MER117 DNA MER1_type 71 189 -8 1599 147 52 33 chr15 59612182 59612488 -26083266 - AluJo SINE Alu 0 312 1 354 261 274 0 chr15 59612651 59612804 -26082950 + MIR SINE MIR 56 250 -12 301 247 130 0 chr15 59612836 59612913 -26082841 - MIR SINE MIR -67 141 55 26 30 0 0 chr15 59615352 59615385 -26080369 + GC_rich Low_complexity Low_complexity 1 33 0 251 204 0 0 chr15 59615793 59615842 -26079912 + L1P LINE L1 4123 4171 -1975 217 109 43 0 chr15 59615873 59615919 -26079835 + (TA)n Simple_repeat Simple_repeat 2 49 0 256 297 117 25 chr15 59615926 59616165 -26079589 + L1ME4a LINE L1 4185 4445 -1701 287 266 78 16 chr15 59616281 59616409 -26079345 + L1ME4a LINE L1 4570 4705 -1441 183 80 0 0 chr15 59616459 59616484 -26079270 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 590 238 73 61 chr15 59616486 59616727 -26079027 - MIR SINE MIR -11 251 11 667 312 78 60 chr15 59616793 59616883 -26078871 + L1ME4a LINE L1 4800 4887 -1259 1925 104 29 4 chr15 59616883 59617184 -26078570 - AluSq SINE Alu 0 308 1 667 312 78 60 chr15 59617184 59617524 -26078230 + L1ME4a LINE L1 4887 5240 -906 419 230 284 7 chr15 59617530 59617678 -26078076 + MER53 DNA DNA 1 189 0 859 283 52 42 chr15 59617711 59618216 -26077538 + L1ME4a LINE L1 5269 5778 -343 1542 188 38 0 chr15 59618267 59618439 -26077315 - AluJb SINE Alu -8 304 115 208 0 62 0 chr15 59618439 59618471 -26077283 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1542 188 38 0 chr15 59618471 59618591 -26077163 - AluJb SINE Alu -197 115 1 722 277 30 56 chr15 59618595 59618826 -26076928 - MIR SINE MIR -37 225 1 465 279 44 53 chr15 59618864 59619179 -26076575 + L1ME4a LINE L1 5782 6095 -26 2357 81 0 0 chr15 59619179 59619489 -26076265 - AluY SINE Alu -1 310 1 465 279 44 53 chr15 59619489 59619513 -26076241 + L1ME4a LINE L1 6095 6118 -3 984 254 62 19 chr15 59620249 59620505 -26075249 - MLT1I LTR MaLR -1 408 142 439 300 95 26 chr15 59620827 59620913 -26074841 + MIR SINE MIR 21 100 -162 1810 128 92 21 chr15 59620913 59621214 -26074540 - MER46B DNA MER2_type -2495 236 32 1988 145 3 0 chr15 59621214 59621517 -26074237 - AluSx SINE Alu -8 304 1 1810 128 92 21 chr15 59621517 59621550 -26074204 - MER46B DNA MER2_type -2699 32 3 439 300 95 26 chr15 59621550 59621653 -26074101 + MIR SINE MIR 100 223 -39 241 247 82 14 chr15 59622331 59622404 -26073350 - MER63 DNA MER1_type -15 1047 970 * 609 203 25 8 chr15 59622400 59622518 -26073236 - MER63 DNA MER1_type -84 752 7 416 337 86 57 chr15 59622875 59623425 -26072329 + L2 LINE L2 2668 3227 -86 225 0 0 0 chr15 59623766 59623791 -26071963 + (TC)n Simple_repeat Simple_repeat 1 25 0 391 292 23 31 chr15 59624302 59624432 -26071322 - MIR SINE MIR -63 145 17 2000 148 119 16 chr15 59624532 59624918 -26070836 + MSTB LTR MaLR 1 426 0 180 156 26 52 chr15 59625508 59625585 -26070169 + GA-rich Low_complexity Low_complexity 2 76 0 429 349 19 19 chr15 59625895 59626104 -26069650 + MIR SINE MIR 37 245 -17 526 237 38 114 chr15 59626524 59626841 -26068913 + MLT1I LTR MaLR 106 398 -11 180 0 0 0 chr15 59627575 59627595 -26068159 + (TTC)n Simple_repeat Simple_repeat 2 21 0 1714 154 3 18 chr15 59627597 59627882 -26067872 - AluSx SINE Alu -31 281 1 211 228 119 79 chr15 59628209 59628310 -26067444 - MIR SINE MIR -61 147 43 353 252 59 34 chr15 59628342 59628461 -26067293 + L2 LINE L2 3190 3311 -2 3073 165 18 23 chr15 59628968 59629567 -26066187 - L1MB7 LINE L1 -3 6181 5586 664 199 5 89 chr15 59629816 59630007 -26065747 + MER5A DNA MER1_type 9 183 -6 572 321 151 59 chr15 59631311 59632562 -26063192 - L2 LINE L2 -73 3199 1835 339 361 7 0 chr15 59632562 59632706 -26063048 - L2 LINE L2 -1855 1459 1315 216 355 121 16 chr15 59634131 59634255 -26061499 - L2 LINE L2 -14 3258 3122 802 316 147 47 chr15 59634400 59635253 -26060501 + L2 LINE L2 1837 2774 -540 2437 100 26 40 chr15 59635870 59636250 -26059504 + THE1C LTR MaLR 1 375 0 398 290 102 118 chr15 59636367 59636861 -26058893 + L2 LINE L2 2781 3267 -5 216 163 0 0 chr15 59636864 59636907 -26058847 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 218 305 17 0 chr15 59636953 59637012 -26058742 - L2 LINE L2 -218 3054 2995 3805 159 29 55 chr15 59637023 59637572 -26058182 + L1MB7 LINE L1 5189 5715 -469 2560 133 68 2 chr15 59637572 59637972 -26057782 + MSTB LTR MaLR 1 426 0 3805 159 29 55 chr15 59637972 59638323 -26057431 + L1MB7 LINE L1 5715 6073 -111 901 265 93 19 chr15 59638326 59638650 -26057104 + LTR26 LTR ERV1 1 348 -255 324 260 6 55 chr15 59638840 59639021 -26056733 + (CCCCG)n Simple_repeat Simple_repeat 5 176 0 218 186 23 0 chr15 59639126 59639169 -26056585 + C-rich Low_complexity Low_complexity 4 47 0 798 249 0 0 chr15 59639560 59639725 -26056029 + MIR SINE MIR 68 232 -30 187 200 140 0 chr15 59639698 59639748 -26056006 + L2 LINE L2 3210 3266 -6 * 392 262 24 24 chr15 59639745 59639871 -26055883 + GA-rich Low_complexity Low_complexity 3 128 0 312 70 0 0 chr15 59642698 59642741 -26053013 + (TC)n Simple_repeat Simple_repeat 2 44 0 369 0 0 0 chr15 59642743 59642784 -26052970 + (CA)n Simple_repeat Simple_repeat 1 41 0 2143 111 0 0 chr15 59642898 59643217 -26052537 - AluSg SINE Alu 0 319 1 379 320 0 34 chr15 59643283 59643458 -26052296 + MIR SINE MIR 86 254 -8 6023 142 33 7 chr15 59643671 59643854 -26051900 - L1MA8 LINE L1 -4 6287 6110 2296 84 0 17 chr15 59643854 59644151 -26051603 + AluSc SINE Alu 1 292 -17 6023 142 33 7 chr15 59644151 59645474 -26050280 - L1MA8 LINE L1 -181 6110 4737 424 324 46 10 chr15 59645675 59645898 -26049856 - L1MC5 LINE L1 -1039 6956 6675 279 160 0 0 chr15 59646118 59646193 -26049561 + (TA)n Simple_repeat Simple_repeat 2 76 0 6506 107 19 3 chr15 59647221 59648128 -26047626 - HERVL LTR ERVL -646 5008 4088 2394 119 0 20 chr15 59648130 59648484 -26047270 + THE1C LTR MaLR 29 375 0 291 283 68 26 chr15 59648674 59648865 -26046889 - L1ME LINE L1 -377 5744 5546 2005 117 0 0 chr15 59648870 59649135 -26046619 - AluSg SINE Alu -45 265 1 357 325 80 20 chr15 59649136 59649386 -26046368 - L1ME LINE L1 -2357 3789 3525 226 308 0 0 chr15 59649395 59649460 -26046294 + CT-rich Low_complexity Low_complexity 2 66 0 999 150 27 37 chr15 59649946 59650133 -26045621 + LTR26 LTR ERV1 396 580 -23 681 136 0 0 chr15 59650196 59650299 -26045455 + L1MB7 LINE L1 6073 6175 -9 219 170 21 0 chr15 59652571 59652618 -26043136 + GA-rich Low_complexity Low_complexity 2 49 0 208 271 0 51 chr15 59654113 59654172 -26041582 - MIR SINE MIR -131 77 22 431 278 33 67 chr15 59654724 59654994 -26040760 - L2 LINE L2 -10 3303 3043 205 274 32 0 chr15 59655024 59655086 -26040668 + L2 LINE L2 3001 3064 -208 2578 177 75 4 chr15 59655434 59655955 -26039799 + LTR64 LTR ERVK 1 558 0 2529 69 0 0 chr15 59656173 59656477 -26039277 + AluY SINE Alu 1 304 -7 1631 151 99 3 chr15 59656596 59656880 -26038874 + AluJb SINE Alu 1 311 -1 1496 196 25 0 chr15 59656903 59657179 -26038575 + AluJo SINE Alu 13 295 -17 264 261 99 99 chr15 59657556 59657778 -26037976 + MLT1H LTR MaLR 99 320 -229 1704 144 151 95 chr15 59657881 59658366 -26037388 + MLT2B1 LTR ERVL 1 512 -8 2166 120 23 0 chr15 59658975 59659275 -26036479 - AluSx SINE Alu -5 307 1 685 256 26 31 chr15 59659526 59659753 -26036001 + MIR SINE MIR 2 227 -35 196 176 59 59 chr15 59660447 59660515 -26035239 + L2 LINE L2 2608 2675 -639 264 358 157 22 chr15 59660641 59661010 -26034744 + L2 LINE L2 2843 3261 -11 2002 181 64 18 chr15 59661666 59662137 -26033617 + L1MB2 LINE L1 5721 6156 -15 25 31 0 0 chr15 59662356 59662388 -26033366 + AT_rich Low_complexity Low_complexity 1 32 0 733 241 174 39 chr15 59662658 59662808 -26032946 + MLT1H LTR MaLR 128 256 -293 351 44 0 0 chr15 59662808 59662853 -26032901 + (GA)n Simple_repeat Simple_repeat 1 45 0 733 241 174 39 chr15 59662853 59663063 -26032691 + MLT1H LTR MaLR 256 537 -12 245 200 0 0 chr15 59663072 59663117 -26032637 - MLT1J LTR MaLR -466 45 1 2129 110 10 7 chr15 59663530 59663830 -26031924 + AluSc SINE Alu 1 301 -8 265 281 148 50 chr15 59664897 59665491 -26030263 + L1ME4a LINE L1 4052 4703 -1443 758 153 25 0 chr15 59665500 59665618 -26030136 - LTR12 LTR ERV1 -232 482 362 342 270 0 0 chr15 59665621 59665721 -26030033 - LTR30 LTR ERV1 -98 624 525 1416 128 35 30 chr15 59665721 59665996 -26029758 - LTR12 LTR ERV1 -431 2007 55 270 231 0 0 chr15 59665996 59666048 -26029706 - LTR30 LTR ERV1 -670 52 1 375 314 129 38 chr15 59666730 59667102 -26028652 + L1ME4a LINE L1 5480 5885 -236 195 100 0 0 chr15 59667145 59667175 -26028579 + (TA)n Simple_repeat Simple_repeat 1 30 0 319 150 38 12 chr15 59667202 59667282 -26028472 + L1ME4a LINE L1 6007 6088 -33 2328 96 0 0 chr15 59667636 59667929 -26027825 - AluSx SINE Alu -19 293 1 2123 93 10 58 chr15 59668515 59668828 -26026926 - AluSx SINE Alu -14 298 1 241 204 0 0 chr15 59669081 59669125 -26026629 - MLT2B3 LTR ERVL -4 516 473 5429 128 59 51 chr15 59669132 59670153 -26025601 - MER52C LTR ERV1 0 1278 250 2447 129 22 104 chr15 59670154 59670642 -26025112 - LTR12 LTR ERV1 -234 480 33 546 159 66 0 chr15 59670642 59670822 -26024932 - MER52C LTR ERV1 -987 291 1 344 143 14 0 chr15 59670826 59670896 -26024858 + GA-rich Low_complexity Low_complexity 1 71 0 2163 137 43 174 chr15 59670897 59671482 -26024272 - MLT2B3 LTR ERVL -46 508 1 205 314 159 25 chr15 59671957 59672428 -26023326 - L2 LINE L2 -785 2529 1996 857 235 15 20 chr15 59672515 59672719 -26023035 + MER58A DNA MER1_type 22 224 0 181 280 55 99 chr15 59672726 59672784 -26022970 - L2 LINE L2 -1475 1839 1780 2092 131 0 0 chr15 59672784 59673074 -26022680 - AluSx SINE Alu -10 302 13 181 280 55 99 chr15 59673074 59673540 -26022214 - L2 LINE L2 -1534 1780 1338 2001 188 34 57 chr15 59674032 59674186 -26021568 - L1MB8 LINE L1 0 6178 6025 9542 194 67 51 chr15 59674186 59675133 -26020621 - L1MD3 LINE L1 -748 5398 4467 2374 148 5 12 chr15 59675133 59675559 -26020195 - L1PA13 LINE L1 -7 6156 5734 9542 194 67 51 chr15 59675559 59677447 -26018307 - L1MD3 LINE L1 -1679 4467 3107 2800 204 22 54 chr15 59677443 59678167 -26017587 - L1MB8 LINE L1 -1192 4954 4254 * 13742 22 3 1 chr15 59678658 59681020 -26014734 - L1PA4 LINE L1 0 6155 3798 4371 233 29 55 chr15 59681791 59683576 -26012178 - L1PA12 LINE L1 -4523 3051 7 209 286 0 60 chr15 59683737 59683821 -26011933 - L3 LINE CR1 -208 1369 1291 895 258 94 57 chr15 59684010 59684453 -26011301 - L1MC4a LINE L1 -369 5752 5519 2341 39 0 14 chr15 59684513 59684797 -26010957 + L1PA7 LINE L1 5845 6124 -30 589 238 39 70 chr15 59684797 59685112 -26010642 + MER97a DNA MER1_type? 96 450 -444 3344 141 18 13 chr15 59685112 59685244 -26010510 - LTR38 LTR ERV1 0 556 426 2439 104 10 36 chr15 59685244 59685629 -26010125 - THE1C LTR MaLR 0 375 1 3344 141 18 13 chr15 59685629 59686049 -26009705 - LTR38 LTR ERV1 -130 426 1 405 375 30 8 chr15 59686182 59686449 -26009305 - L3 LINE CR1 -755 822 550 258 140 194 21 chr15 59686492 59686585 -26009169 - L1ME4a LINE L1 -18 6103 5995 2011 153 0 3 chr15 59686585 59686885 -26008869 - AluSx SINE Alu -11 301 3 1352 165 112 3 chr15 59686929 59687214 -26008540 + MER33 DNA MER1_type 3 318 -6 985 248 144 19 chr15 59687407 59687830 -26007924 + MLT1K LTR MaLR 1 476 0 268 222 56 11 chr15 59688285 59688375 -26007379 - L1ME4a LINE L1 -239 5882 5789 29 28 0 0 chr15 59689173 59689209 -26006545 + AT_rich Low_complexity Low_complexity 1 36 0 201 170 21 117 chr15 59689462 59689556 -26006198 - MIR SINE MIR 0 262 178 319 233 23 101 chr15 59690624 59690753 -26005001 - MIR3 SINE MIR -1 207 89 1850 204 67 3 chr15 59692579 59692922 -26002832 - MLT1A1 LTR MaLR 0 365 1 407 304 48 86 chr15 59693119 59693314 -26002440 - MER102b DNA MER1_type -1117 311 130 1624 103 0 0 chr15 59693314 59693553 -26002201 + AluSc SINE Alu 76 314 0 407 304 48 86 chr15 59693553 59693669 -26002085 - MER102b DNA MER1_type -1298 130 11 221 240 42 21 chr15 59694362 59694458 -26001296 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 534 252 131 31 chr15 59694608 59694830 -26000924 - L1ME4a LINE L1 -312 5809 5566 1423 249 138 30 chr15 59695330 59695861 -25999893 - MLT1E LTR MaLR -3 590 3 1836 140 46 7 chr15 59695998 59696283 -25999471 - AluJo SINE Alu -16 296 1 430 248 64 13 chr15 59697284 59697300 -25998454 - L1MA10 LINE L1 0 6334 6319 2101 201 40 110 chr15 59697300 59697568 -25998186 - L1ME1 LINE L1 -5 6161 5876 358 43 0 0 chr15 59697568 59697614 -25998140 + MADE1 DNA Mariner 35 80 0 2101 201 40 110 chr15 59697614 59698020 -25997734 - L1ME1 LINE L1 -290 5876 5492 413 259 233 16 chr15 59698212 59698405 -25997349 + MIR SINE MIR 18 252 -10 244 130 43 0 chr15 59698534 59698580 -25997174 - L1ME4a LINE L1 -4 6117 6070 2559 62 0 10 chr15 59698672 59698981 -25996773 + AluY SINE Alu 1 306 -5 258 296 75 51 chr15 59699312 59699565 -25996189 + L1MEd LINE L1 574 832 -5287 319 319 103 29 chr15 59699878 59700082 -25995672 + L2 LINE L2 2641 2859 -455 305 309 81 73 chr15 59700279 59700664 -25995090 - MLT1K LTR MaLR -11 577 190 44 0 0 0 chr15 59700840 59700884 -25994870 + AT_rich Low_complexity Low_complexity 1 44 0 202 236 247 22 chr15 59705037 59705126 -25990628 + MER91C DNA MER1_type 1 109 -31 180 0 0 0 chr15 59705463 59705483 -25990271 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 467 243 11 73 chr15 59705656 59705833 -25989921 - L2 LINE L2 0 3313 3148 722 281 82 75 chr15 59707114 59707462 -25988292 - MLT1H LTR MaLR 0 549 194 2421 66 0 10 chr15 59707462 59707766 -25987988 - AluY SINE Alu -10 301 1 722 281 82 75 chr15 59707766 59707954 -25987800 - MLT1H LTR MaLR -355 194 9 198 167 250 19 chr15 59708283 59708391 -25987363 - L3 LINE CR1 -231 1346 1214 322 275 84 70 chr15 59708809 59708951 -25986803 - L2 LINE L2 0 3272 3129 204 283 88 9 chr15 59709098 59709211 -25986543 - MIR SINE MIR -32 230 109 817 190 0 18 chr15 59709264 59709427 -25986327 + L1M2 LINE L1 5037 5196 -950 1613 134 61 8 chr15 59709464 59709804 -25985950 + L1M2 LINE L1 5172 5538 -744 246 309 118 18 chr15 59710156 59710507 -25985247 - L1MC/D LINE L1 -646 5912 5690 295 116 0 0 chr15 59711033 59711076 -25984678 + MLT1F LTR MaLR 497 539 -3 309 359 26 20 chr15 59711135 59711330 -25984424 - L1MC/D LINE L1 -2499 4041 3846 191 175 0 88 chr15 59713389 59713446 -25982308 - L3 LINE CR1 -19 1558 1507 356 324 90 44 chr15 59714443 59714875 -25980879 + MARNA DNA Mariner 62 513 -73 2280 248 67 31 chr15 59715551 59716423 -25979331 - L1MC/D LINE L1 -4268 2272 1370 1049 233 20 16 chr15 59716423 59716672 -25979082 + MLT1C LTR MaLR 212 461 -6 489 48 32 16 chr15 59717155 59717218 -25978536 - AluY SINE Alu -222 89 26 282 285 152 54 chr15 59717225 59717502 -25978252 - L1ME LINE L1 -357 5764 5461 22 56 0 0 chr15 59717938 59717974 -25977780 + AT_rich Low_complexity Low_complexity 1 36 0 1347 93 6 0 chr15 59717974 59718156 -25977598 + AluY SINE Alu 127 309 -2 314 266 115 18 chr15 59722321 59722434 -25973320 + L2 LINE L2 3149 3272 0 266 304 87 91 chr15 59723179 59723278 -25972476 + L2 LINE L2 3044 3142 -130 1152 291 77 19 chr15 59723278 59723797 -25971957 + MLT1H LTR MaLR 1 549 0 266 304 87 91 chr15 59723797 59723927 -25971827 + L2 LINE L2 3142 3272 0 554 274 32 43 chr15 59725044 59725230 -25970524 + L2 LINE L2 3126 3309 -4 309 250 83 21 chr15 59725744 59725840 -25969914 + MER91C DNA MER1_type 38 139 -1 1854 210 20 12 chr15 59726010 59726419 -25969335 - L1M4c LINE L1 -4627 1757 1346 465 290 17 23 chr15 59726437 59726613 -25969141 + HAL1 LINE L1 2325 2499 -8 1413 253 195 9 chr15 59726637 59727186 -25968568 + L1MC4a LINE L1 5324 5974 -1834 487 252 238 0 chr15 59727817 59728023 -25967731 + Charlie2 DNA MER1_type 5 259 -2603 677 288 98 53 chr15 59728094 59728994 -25966760 - L1ME LINE L1 -675 5491 4633 601 244 24 0 chr15 59728994 59729121 -25966633 - FLAM_A SINE Alu -2 131 2 677 288 98 53 chr15 59729121 59729315 -25966439 - L1ME LINE L1 -1533 4633 4449 1279 278 58 59 chr15 59729315 59729905 -25965849 + MLT1G LTR MaLR 2 590 0 677 288 98 53 chr15 59729905 59730003 -25965751 - L1ME LINE L1 -1717 4449 4253 679 238 47 6 chr15 59730015 59730187 -25965567 - MER58A DNA MER1_type 0 224 46 800 168 10 64 chr15 59730313 59730515 -25965239 + MER106A DNA MER1_type 35 225 -11 1554 249 56 20 chr15 59731079 59731488 -25964266 + REP3 LTR ERV 1 424 -138 618 273 48 34 chr15 59731584 59731983 -25963771 - MLT1E LTR MaLR -171 455 74 5211 228 62 24 chr15 59731983 59733489 -25962265 + L1MB7 LINE L1 2785 4347 -1799 2491 207 33 7 chr15 59733486 59734056 -25961698 + L1MB7 LINE L1 4706 5290 -856 * 2228 187 19 30 chr15 59734053 59734106 -25961648 + L1MB7 LINE L1 5699 5751 -433 * 1495 209 99 58 chr15 59734106 59734590 -25961164 + MLT1D LTR MaLR 1 504 -1 2228 187 19 30 chr15 59734590 59735007 -25960747 + L1MB7 LINE L1 5751 6164 -20 552 187 9 9 chr15 59735014 59735121 -25960633 - MLT1E LTR MaLR -458 109 3 319 290 145 0 chr15 59735256 59735449 -25960305 + L1MCa LINE L1 1444 1664 -4762 1277 159 47 12 chr15 59735453 59735569 -25960185 + L1MD3 LINE L1 7730 7840 -155 1699 100 5 0 chr15 59735569 59735789 -25959965 + AluSp SINE Alu 82 302 -11 1277 159 47 12 chr15 59735789 59735929 -25959825 + L1MD3 LINE L1 7840 7995 0 258 294 188 39 chr15 59735911 59736449 -25959305 + L1MCa LINE L1 1826 2443 -4164 * 527 275 107 68 chr15 59736460 59736851 -25958903 - L1ME LINE L1 -2094 4052 3633 2797 97 17 6 chr15 59736851 59737211 -25958543 - THE1B LTR MaLR 0 364 1 527 275 107 68 chr15 59737211 59737361 -25958393 - L1ME LINE L1 -2513 3633 3490 2654 233 110 34 chr15 59737380 59738169 -25957585 + MER21B LTR ERV1 15 863 0 316 291 85 34 chr15 59738169 59738723 -25957031 - L1ME LINE L1 -2652 3494 2913 699 244 111 44 chr15 59738735 59739005 -25956749 - L1ME3A LINE L1 -1 6169 5882 951 252 35 10 chr15 59739007 59739297 -25956457 - L1ME3A LINE L1 -200 5970 5674 2062 163 28 63 chr15 59740429 59740858 -25954896 + MLT2D LTR ERVL 1 414 0 257 204 0 0 chr15 59741441 59741490 -25954264 + MER58 DNA MER1_type 2372 2420 0 2488 64 0 3 chr15 59742159 59742457 -25953297 + AluY SINE Alu 1 297 -14 252 224 0 0 chr15 59743298 59743365 -25952389 + (TA)n Simple_repeat Simple_repeat 2 68 0 201 323 32 0 chr15 59744321 59744414 -25951340 - MIR3 SINE MIR -3 205 110 529 110 123 18 chr15 59744491 59744598 -25951156 + L1PB1 LINE L1 5840 5939 -212 231 36 0 0 chr15 59744602 59744630 -25951124 + (CAA)n Simple_repeat Simple_repeat 2 29 0 264 59 0 0 chr15 59744837 59744871 -25950883 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2112 110 0 3 chr15 59744873 59745155 -25950599 - AluSx SINE Alu -31 281 1 3745 121 67 14 chr15 59745785 59746366 -25949388 + LTR9 LTR ERV1 1 612 0 17062 128 141 130 chr15 59746383 59749676 -25946078 + HUERS-P3b LTR ERV1 17 3366 -4052 2312 110 0 7 chr15 59749676 59749984 -25945770 - AluSg SINE Alu -4 306 1 17062 128 141 130 chr15 59749984 59750915 -25944839 + HUERS-P3b LTR ERV1 3366 4286 -3132 207 0 0 0 chr15 59751347 59751370 -25944384 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2501 67 3 3 chr15 59752227 59752540 -25943214 - AluSp SINE Alu 0 313 1 42 65 0 0 chr15 59752765 59752842 -25942912 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr15 59753857 59753878 -25941876 + AT_rich Low_complexity Low_complexity 1 21 0 577 286 92 35 chr15 59754624 59754691 -25941063 - L1ME3A LINE L1 -289 5881 5819 2441 61 3 13 chr15 59754691 59755003 -25940751 - AluY SINE Alu -2 309 1 577 286 92 35 chr15 59755003 59755218 -25940536 - L1ME3A LINE L1 -351 5819 5583 443 300 90 10 chr15 59755238 59755438 -25940316 - MLT1L LTR MaLR -221 394 179 1036 190 37 23 chr15 59755457 59755673 -25940081 - MER20 DNA MER1_type 0 219 1 264 227 67 113 chr15 59756838 59756910 -25938844 + MIR SINE MIR 13 87 -175 1959 137 59 14 chr15 59756910 59757267 -25938487 - THE1C LTR MaLR 0 375 3 264 227 67 113 chr15 59757267 59757388 -25938366 + MIR SINE MIR 87 197 -65 212 225 0 42 chr15 59757514 59757585 -25938169 - MIR SINE MIR 0 262 195 * 938 296 159 7 chr15 59757574 59758474 -25937280 - L2 LINE L2 0 3313 2267 345 155 84 0 chr15 59758576 59758647 -25937107 - MIR SINE MIR -73 189 113 1987 163 44 14 chr15 59758825 59759188 -25936566 + MSTB1 LTR MaLR 57 430 -2 570 219 55 96 chr15 59760457 59760676 -25935078 - MER63A DNA MER1_type 0 210 1 1002 196 0 0 chr15 59760893 59761077 -25934677 + MER5A DNA MER1_type 6 189 0 6996 137 12 12 chr15 59761287 59762465 -25933289 + L1MA3 LINE L1 4773 5955 -350 2144 120 0 7 chr15 59762465 59762795 -25932959 + AluSx SINE Alu 1 328 0 6996 137 12 12 chr15 59762795 59763147 -25932607 + L1MA3 LINE L1 5955 6305 0 180 351 66 26 chr15 59763250 59763401 -25932353 - L2 LINE L2 0 3272 3116 419 263 6 75 chr15 59763460 59763620 -25932134 - MIR3 SINE MIR -39 169 21 2140 111 7 0 chr15 59763796 59764084 -25931670 + AluSc SINE Alu 5 294 -15 227 286 65 13 chr15 59764698 59764775 -25930979 + MIR SINE MIR 17 97 -165 2335 179 43 71 chr15 59766366 59766996 -25928758 - LTR9 LTR ERV1 0 612 1 432 301 91 6 chr15 59767320 59767496 -25928258 - MIR SINE MIR -5 257 67 1017 202 211 6 chr15 59768739 59769080 -25926674 - HsTC2 DNA Tc2 -77 1821 1235 225 263 276 0 chr15 59769119 59769195 -25926559 - HsTC2 DNA Tc2 -1799 99 3 253 221 286 0 chr15 59769215 59769292 -25926462 + MIR SINE MIR 162 260 -2 3030 112 4 2 chr15 59769427 59769882 -25925872 + L1PA8A LINE L1 4878 5333 -813 2073 118 3 3 chr15 59769882 59770178 -25925576 + AluSx SINE Alu 1 296 -16 1301 122 0 0 chr15 59770202 59770382 -25925372 + AluSg/x SINE Alu 131 310 -2 4767 55 10 3 chr15 59770389 59770986 -25924768 + L1PA8A LINE L1 5314 5914 -217 3372 82 11 7 chr15 59770986 59771416 -25924338 + L1PA8A LINE L1 5677 6128 -3 2631 153 18 2 chr15 59771416 59771857 -25923897 + L1MC1 LINE L1 5880 6332 -1 1676 178 53 60 chr15 59771859 59772309 -25923445 + L1MC4 LINE L1 7596 8042 0 324 296 11 0 chr15 59772831 59772919 -25922835 + MIR SINE MIR 40 128 -134 463 284 37 32 chr15 59773163 59773353 -25922401 + MIR SINE MIR 22 212 -50 423 56 0 0 chr15 59773394 59773448 -25922306 + (TA)n Simple_repeat Simple_repeat 1 54 0 643 276 70 13 chr15 59778282 59778510 -25917244 - MIR SINE MIR 0 262 22 276 199 16 57 chr15 59779997 59780085 -25915669 - MIR SINE MIR -62 146 100 2237 111 0 19 chr15 59780533 59780848 -25914906 + AluSc SINE Alu 1 309 0 2333 100 7 0 chr15 59780863 59781163 -25914591 + AluSp SINE Alu 3 304 -9 186 133 0 0 chr15 59781270 59781300 -25914454 + (A)n Simple_repeat Simple_repeat 1 30 0 363 262 131 0 chr15 59781782 59781904 -25913850 + MIR3 SINE MIR 53 190 -18 233 340 64 0 chr15 59782992 59783086 -25912668 + L2 LINE L2 3164 3263 -9 21 36 0 0 chr15 59783424 59783452 -25912302 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr15 59784090 59784117 -25911637 + GC_rich Low_complexity Low_complexity 1 27 0 219 88 0 0 chr15 59784132 59784166 -25911588 + (GGA)n Simple_repeat Simple_repeat 1 34 0 195 208 75 38 chr15 59785681 59785734 -25910020 - L2 LINE L2 -251 3062 3008 264 30 0 0 chr15 59786000 59786033 -25909721 + (GA)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr15 59787811 59787840 -25907914 + (TG)n Simple_repeat Simple_repeat 2 30 0 313 260 0 0 chr15 59788811 59788884 -25906870 - HsTC2 DNA Tc2 -3 1895 1823 30 27 0 0 chr15 59788971 59789008 -25906746 + AT_rich Low_complexity Low_complexity 1 37 0 4121 116 11 11 chr15 59789013 59789645 -25906109 - L1MC1 LINE L1 0 6333 5702 506 281 132 54 chr15 59789651 59790640 -25905114 - L2 LINE L2 -16 3297 2245 621 82 27 0 chr15 59790866 59790976 -25904778 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 368 322 43 93 chr15 59791163 59791486 -25904268 + L2 LINE L2 2966 3272 0 23 0 0 0 chr15 59791779 59791802 -25903952 + AT_rich Low_complexity Low_complexity 1 23 0 505 266 159 36 chr15 59792500 59792940 -25902814 - L1ME4a LINE L1 -28 6093 5600 1178 128 15 31 chr15 59794287 59794483 -25901271 + MER20 DNA MER1_type 27 219 0 209 260 270 30 chr15 59795422 59795522 -25900232 - L2 LINE L2 -8 3305 3182 519 314 79 74 chr15 59795565 59796036 -25899718 - L2 LINE L2 -539 2775 2303 381 241 13 0 chr15 59796109 59796188 -25899566 + L2 LINE L2 3234 3313 0 2056 231 43 52 chr15 59796280 59796732 -25899022 - L1MC4 LINE L1 -1 8041 7595 180 97 0 0 chr15 59796732 59796763 -25898991 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2056 231 43 52 chr15 59796763 59796919 -25898835 - L1MC4 LINE L1 -447 7595 7439 455 237 17 12 chr15 59797600 59797773 -25897981 + CT-rich Low_complexity Low_complexity 1 174 0 183 311 16 0 chr15 59797922 59797983 -25897771 - L2 LINE L2 -25 3247 3186 330 284 85 21 chr15 59798033 59798174 -25897580 + MIR SINE MIR 110 259 -3 402 284 9 18 chr15 59798985 59799094 -25896660 - L2 LINE L2 0 3272 3165 627 179 74 49 chr15 59799232 59799394 -25896360 - MER5A DNA MER1_type 0 189 24 353 257 20 13 chr15 59800276 59800307 -25895447 + (TA)n Simple_repeat Simple_repeat 1 30 -123 1581 184 126 8 chr15 59800307 59800681 -25895073 + MER47B DNA MER2_type 1 418 0 353 257 20 13 chr15 59800681 59800801 -25894953 + (TA)n Simple_repeat Simple_repeat 30 153 0 3401 117 28 2 chr15 59801007 59801513 -25894241 + L1PB3 LINE L1 5636 6154 0 314 136 0 17 chr15 59801514 59801573 -25894181 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 659 281 72 51 chr15 59802026 59802705 -25893049 + L1MEd LINE L1 922 1669 -4641 454 278 85 52 chr15 59803112 59803360 -25892394 + MIR SINE MIR 5 260 -2 288 111 0 0 chr15 59803865 59803910 -25891844 + (GA)n Simple_repeat Simple_repeat 1 45 0 613 239 59 67 chr15 59803916 59804154 -25891600 - MLT1K LTR MaLR 0 588 353 443 304 58 24 chr15 59804216 59804423 -25891331 - MLT1K LTR MaLR -372 216 3 207 0 0 0 chr15 59805417 59805440 -25890314 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 59805455 59805478 -25890276 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr15 59805665 59805688 -25890066 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 857 135 0 8 chr15 59805689 59805815 -25889939 - L1PA8A LINE L1 -12 6119 5995 1603 150 7 44 chr15 59805875 59806197 -25889557 + AluJo SINE Alu 1 311 0 1663 204 32 27 chr15 59806839 59807211 -25888543 - MLT1A2 LTR MaLR 0 374 1 330 373 83 24 chr15 59807745 59807997 -25887757 - L3 LINE CR1 0 1577 1311 2849 221 81 20 chr15 59809199 59809936 -25885818 + MER21B LTR ERV1 1 782 -81 1629 197 49 12 chr15 59812426 59812751 -25883003 + MER58B DNA MER1_type 1 337 -4 2053 88 0 44 chr15 59813335 59813707 -25882047 - AluSx SINE Alu 0 359 1 4252 135 16 2 chr15 59813765 59814409 -25881345 - MER39B LTR ERV1 0 653 1 313 322 7 20 chr15 59814739 59814888 -25880866 + GA-rich Low_complexity Low_complexity 1 147 0 205 176 0 0 chr15 59815909 59815943 -25879811 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 351 0 0 0 chr15 59818031 59818070 -25877684 + (CA)n Simple_repeat Simple_repeat 2 40 0 1669 125 0 4 chr15 59818818 59819066 -25876688 - AluSg SINE Alu -32 278 32 266 244 138 16 chr15 59819600 59819723 -25876031 - L1ME4a LINE L1 -213 5908 5771 228 229 141 77 chr15 59819861 59820031 -25875723 - L3 LINE CR1 -264 1313 1133 195 361 48 12 chr15 59820933 59821016 -25874738 - MIR SINE MIR -92 116 31 232 283 104 61 chr15 59822420 59822650 -25873104 + L2 LINE L2 3032 3271 -1 510 304 107 19 chr15 59823191 59823564 -25872190 - L2 LINE L2 -219 3053 2632 247 276 216 23 chr15 59823739 59824040 -25871714 - L2 LINE L2 -1202 2112 1754 390 104 56 16 chr15 59824440 59824565 -25871189 + (TG)n Simple_repeat Simple_repeat 2 131 0 390 139 52 17 chr15 59824648 59824821 -25870933 + (TG)n Simple_repeat Simple_repeat 1 179 0 297 129 79 7 chr15 59824848 59824988 -25870766 + (TG)n Simple_repeat Simple_repeat 2 151 0 326 171 38 21 chr15 59825081 59825326 -25870428 + (TG)n Simple_repeat Simple_repeat 1 249 0 193 180 42 24 chr15 59825349 59825516 -25870238 + (TG)n Simple_repeat Simple_repeat 2 171 0 330 132 37 29 chr15 59825531 59825667 -25870087 + (TG)n Simple_repeat Simple_repeat 2 138 0 753 216 62 6 chr15 59826132 59826294 -25869460 - MIR SINE MIR -10 252 82 385 277 52 12 chr15 59826412 59826528 -25869226 - MIR SINE MIR -62 146 70 376 315 112 11 chr15 59826704 59826882 -25868872 + MIR SINE MIR 61 256 -6 192 301 158 7 chr15 59826903 59827049 -25868705 - L3 LINE CR1 -151 1426 1259 370 187 36 96 chr15 59827084 59827250 -25868504 - L1ME4a LINE L1 -11 6110 5955 198 0 0 0 chr15 59827250 59827272 -25868482 + (CA)n Simple_repeat Simple_repeat 2 23 0 304 326 68 7 chr15 59827977 59828124 -25867630 + L1M4 LINE L1 3900 4055 -2091 303 338 132 15 chr15 59828161 59828365 -25867389 - MIR SINE MIR -5 257 30 244 266 32 21 chr15 59828393 59828487 -25867267 + L1M4 LINE L1 4103 4197 -1949 2272 50 0 7 chr15 59828810 59829126 -25866628 + AluY SINE Alu 1 314 0 355 263 69 44 chr15 59829182 59829342 -25866412 + MER103 DNA DNA 3 166 0 191 273 65 13 chr15 59830814 59830891 -25864863 - MIR SINE MIR -93 115 35 1048 75 12 0 chr15 59831731 59831891 -25863863 + (CCAA)n Simple_repeat Simple_repeat 2 163 0 846 159 0 0 chr15 59833046 59833178 -25862576 - FLAM_C SINE Alu 0 133 2 497 189 36 45 chr15 59835699 59835810 -25859944 - MER81 DNA DNA -4 110 1 611 130 0 0 chr15 59938456 59938548 -25757206 + U6 snRNA snRNA 1 92 -15 1658 181 0 7 chr15 59939153 59939429 -25756325 - AluJb SINE Alu -38 274 1 630 299 76 5 chr15 59939478 59939702 -25756052 - MIR SINE MIR -5 257 18 237 279 98 0 chr15 59940068 59940129 -25755625 - L2 LINE L2 -3 3269 3203 863 29 0 0 chr15 59940152 59940254 -25755500 - AluY SINE Alu -209 102 1 551 199 205 12 chr15 59940534 59940700 -25755054 + MIR SINE MIR 16 213 -49 246 346 125 0 chr15 59941824 59941928 -25753826 + L2 LINE L2 3147 3263 -9 384 323 129 0 chr15 59941954 59942140 -25753614 - L3 LINE CR1 -354 1223 1014 722 251 40 52 chr15 59942236 59942571 -25753183 - Tigger8 DNA MER2_type -85 581 249 2017 128 35 0 chr15 59942571 59942859 -25752895 - AluSx SINE Alu -14 298 1 295 240 60 10 chr15 59943040 59943140 -25752614 - Tigger8 DNA MER2_type -423 243 139 227 204 0 23 chr15 59943155 59943199 -25752555 + MER57A LTR ERV1 295 337 -66 185 278 62 83 chr15 59943340 59943484 -25752270 - L3 LINE CR1 -644 933 793 2116 142 0 16 chr15 59943491 59943808 -25751946 - AluSx SINE Alu 0 312 1 1706 185 0 7 chr15 59944971 59945273 -25750481 - AluJb SINE Alu -12 300 1 749 282 91 42 chr15 59945439 59945812 -25749942 - HAL1 LINE L1 -697 1810 1457 2397 70 0 0 chr15 59945812 59946110 -25749644 + AluSx SINE Alu 1 298 -14 749 282 91 42 chr15 59946110 59946487 -25749267 - HAL1 LINE L1 -1050 1457 959 341 287 44 29 chr15 59946639 59946775 -25748979 + MIR SINE MIR 124 261 -1 917 176 0 4 chr15 59947164 59947380 -25748374 + AluJb SINE Alu 2 303 -9 1390 176 52 11 chr15 59947399 59947523 -25748231 + AluJo SINE Alu 1 119 -193 342 0 0 0 chr15 59947523 59947561 -25748193 + (CA)n Simple_repeat Simple_repeat 1 38 0 1390 176 52 11 chr15 59947561 59947708 -25748046 + AluJo SINE Alu 119 283 -29 21 71 0 0 chr15 59947708 59947750 -25748004 + AT_rich Low_complexity Low_complexity 1 42 0 261 342 58 50 chr15 59947773 59947893 -25747861 - L2 LINE L2 -8 3264 3144 450 315 201 36 chr15 59947894 59948154 -25747600 - L2 LINE L2 -383 2931 2715 1720 168 10 3 chr15 59948154 59948464 -25747290 + AluJb SINE Alu 1 312 0 450 315 201 36 chr15 59948464 59948806 -25746948 - L2 LINE L2 -599 2715 2230 1815 162 7 3 chr15 59948867 59949176 -25746578 + AluJo SINE Alu 1 310 -2 1967 86 62 3 chr15 59949328 59949618 -25746136 + AluY SINE Alu 3 309 -2 791 160 0 42 chr15 59949731 59949875 -25745879 - FLAM_C SINE Alu -4 139 2 1757 95 16 92 chr15 59949906 59950221 -25745533 + AluSq SINE Alu 22 312 -1 4719 147 31 7 chr15 59951118 59951882 -25743872 + LTR39 LTR ERV1 1 783 0 4506 162 31 28 chr15 59953293 59954109 -25741645 + LTR1B LTR ERV1 9 826 0 1020 197 113 72 chr15 59954115 59954505 -25741249 + MLT1C LTR MaLR 60 465 -2 546 238 87 87 chr15 59954544 59954604 -25741150 - MIR SINE MIR 0 262 203 1647 201 0 10 chr15 59954604 59954918 -25740836 - AluJo SINE Alu -1 311 1 546 238 87 87 chr15 59954918 59955109 -25740645 - MIR SINE MIR -58 204 11 21 0 0 0 chr15 59955269 59955290 -25740464 + AT_rich Low_complexity Low_complexity 1 21 0 804 143 0 0 chr15 59955297 59955416 -25740338 - FRAM SINE Alu -31 145 27 1578 175 3 19 chr15 59955551 59955859 -25739895 - AluJo SINE Alu -9 303 1 1608 146 4 0 chr15 59955867 59956137 -25739617 - AluSx SINE Alu 0 308 38 1085 152 50 20 chr15 59956176 59956374 -25739380 - LTR56 LTR ERV1 -238 207 4 286 258 13 76 chr15 59956741 59956906 -25738848 + MER21A LTR ERV1 1 152 -711 1395 184 150 10 chr15 59956997 59957290 -25738464 + MER21B LTR ERV1 144 477 -386 759 134 0 79 chr15 59957290 59957411 -25738343 + MER4A LTR ERV1 1 107 -557 4351 83 2 2 chr15 59957411 59957965 -25737789 + MER41A LTR ERV1 1 554 0 759 134 0 79 chr15 59957965 59958007 -25737747 + MER4A LTR ERV1 107 151 -513 2005 102 8 37 chr15 59958011 59958383 -25737371 + MER4A LTR ERV1 245 664 0 1587 156 31 8 chr15 59958400 59958657 -25737097 + MER21B LTR ERV1 510 772 -91 452 138 0 25 chr15 59958712 59958792 -25736962 + MER21B LTR ERV1 786 863 0 194 366 134 18 chr15 59958828 59959104 -25736650 + L2 LINE L2 2514 2821 -493 3002 129 40 51 chr15 59959119 59959733 -25736021 + MER4B LTR ERV1 1 779 0 2223 143 36 13 chr15 59959832 59960211 -25735543 + MER57A LTR ERV1 1 389 -10 2290 84 7 0 chr15 59960211 59960521 -25735233 - AluSp SINE Alu -1 312 1 3277 153 20 38 chr15 59960720 59960801 -25734953 - MER41B LTR ERV1 -38 597 516 2211 84 3 34 chr15 59960801 59961124 -25734630 + AluSp SINE Alu 1 313 0 3277 153 20 38 chr15 59961124 59961650 -25734104 - MER41B LTR ERV1 -119 516 1 191 189 81 0 chr15 59961774 59961811 -25733943 + L2 LINE L2 3016 3055 -258 1546 176 0 21 chr15 59962225 59962515 -25733239 + AluJo SINE Alu 5 288 -24 356 280 25 51 chr15 59962621 59962671 -25733083 - MER5B DNA MER1_type -63 115 65 1962 143 140 29 chr15 59962671 59963056 -25732698 - MSTA LTR MaLR 0 428 1 356 280 25 51 chr15 59963056 59963123 -25732631 - MER5B DNA MER1_type -113 65 1 209 285 70 59 chr15 59963145 59963331 -25732423 - L2 LINE L2 -1497 1817 1630 813 188 12 0 chr15 59963383 59963548 -25732206 - FRAM SINE Alu -9 167 1 255 303 76 8 chr15 59963730 59963862 -25731892 - L1ME4a LINE L1 -16 6105 5965 306 309 43 91 chr15 59963919 59964129 -25731625 + L3 LINE CR1 964 1163 -414 931 272 110 64 chr15 59964925 59965443 -25730311 - MLT1F LTR MaLR 0 542 1 2307 94 0 0 chr15 59965485 59965794 -25729960 - AluY SINE Alu -2 309 1 630 278 33 33 chr15 59965928 59965996 -25729758 + MIR SINE MIR 50 117 -145 2162 154 34 17 chr15 59965996 59966354 -25729400 + THE1B LTR MaLR 1 364 0 630 278 33 33 chr15 59966354 59966497 -25729257 + MIR SINE MIR 116 261 -1 372 263 294 12 chr15 59966657 59966817 -25728937 - MIR SINE MIR -11 251 47 353 242 186 57 chr15 59966972 59967096 -25728658 - MIR SINE MIR -108 154 15 187 171 24 24 chr15 59967181 59967222 -25728532 + L2 LINE L2 3265 3305 -8 2455 185 59 10 chr15 59967739 59968230 -25727524 - MLT2B2 LTR ERVL 0 515 1 228 290 40 30 chr15 59968311 59968411 -25727343 + L2 LINE L2 3163 3263 -9 1875 148 7 0 chr15 59968502 59968792 -25726962 + AluSx SINE Alu 7 298 -14 30 45 0 0 chr15 59968818 59968862 -25726892 + AT_rich Low_complexity Low_complexity 1 44 0 2169 157 75 15 chr15 59969060 59969462 -25726292 + MSTA LTR MaLR 1 426 -2 867 226 129 62 chr15 59969515 59970115 -25725639 - L1ME4a LINE L1 -210 5911 5287 490 165 21 169 chr15 59970185 59970356 -25725398 - L1MC5 LINE L1 -37 7924 7796 1492 204 0 0 chr15 59970356 59970645 -25725109 - AluJb SINE Alu -22 290 2 490 165 21 169 chr15 59970645 59970710 -25725044 - L1MC5 LINE L1 -165 7796 7723 1512 157 82 18 chr15 59970739 59971020 -25724734 - AluJo SINE Alu -13 299 1 392 325 78 41 chr15 59972291 59972752 -25723002 - MLT1J LTR MaLR 0 511 34 1702 187 0 13 chr15 59972904 59973214 -25722540 - AluJb SINE Alu -6 306 1 322 283 142 0 chr15 59973226 59973332 -25722422 - L2 LINE L2 0 3272 3152 180 263 61 101 chr15 59973643 59973742 -25722012 + L2 LINE L2 3168 3262 -10 1575 136 0 0 chr15 59973803 59974023 -25721731 + MER1B DNA MER1_type 1 220 -77 405 141 0 31 chr15 59974031 59974095 -25721659 + MER1B DNA MER1_type 278 339 0 287 303 79 0 chr15 59974982 59975058 -25720696 + L2 LINE L2 3144 3225 -47 2001 136 0 0 chr15 59975148 59975443 -25720311 - AluSx SINE Alu -17 295 1 183 80 0 0 chr15 59975496 59975521 -25720233 + (A)n Simple_repeat Simple_repeat 1 25 0 718 178 16 8 chr15 59975711 59975840 -25719914 + FLAM_A SINE Alu 1 130 -3 234 0 0 0 chr15 59976980 59977006 -25718748 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 0 0 0 chr15 59977080 59977109 -25718645 + GC_rich Low_complexity Low_complexity 1 29 0 200 247 19 62 chr15 59977129 59977291 -25718463 + (CCCG)n Simple_repeat Simple_repeat 1 155 0 207 0 0 0 chr15 59977292 59977315 -25718439 + (CAGC)n Simple_repeat Simple_repeat 3 25 0 229 250 10 10 chr15 59977475 59977571 -25718183 + (CCG)n Simple_repeat Simple_repeat 2 97 0 21 0 0 0 chr15 59977577 59977598 -25718156 + GC_rich Low_complexity Low_complexity 1 21 0 336 313 57 28 chr15 59978239 59978415 -25717339 + MIR3 SINE MIR 7 187 -21 181 229 0 0 chr15 59979768 59979803 -25715951 - L3 LINE CR1 -12 1565 1531 452 206 71 92 chr15 59979810 59979976 -25715778 + MER112 DNA MER1_type 3 166 -94 2499 50 0 0 chr15 59979976 59980278 -25715476 - AluY SINE Alu -9 302 1 452 206 71 92 chr15 59980278 59980295 -25715459 + MER112 DNA MER1_type 166 182 -78 317 311 98 0 chr15 59981079 59981211 -25714543 + L2 LINE L2 3165 3309 -4 1858 150 0 10 chr15 59982530 59982837 -25712917 + AluJo SINE Alu 1 304 -8 181 226 38 19 chr15 59982847 59982900 -25712854 - L2 LINE L2 -9 3263 3210 2186 104 0 0 chr15 59983312 59983611 -25712143 + AluSx SINE Alu 2 300 -12 872 128 43 7 chr15 59984153 59984294 -25711460 + AluJo SINE Alu 22 167 -145 399 143 0 0 chr15 59984294 59984357 -25711397 + FLAM_A SINE Alu 65 127 -6 612 236 148 91 chr15 59984879 59985277 -25710477 - MSTC LTR MaLR -7 421 1 208 296 8 112 chr15 59985281 59985406 -25710348 + MIR3 SINE MIR 90 201 -7 262 184 0 0 chr15 59985481 59985530 -25710224 + MER5B DNA MER1_type 1 49 -129 1603 178 99 3 chr15 59985716 59986019 -25709735 - MER44D DNA MER2_type -6 603 2 583 104 83 10 chr15 59986366 59986462 -25709292 + L1PA3 LINE L1 6048 6150 -5 186 43 0 0 chr15 59986479 59986502 -25709252 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr15 59987248 59987282 -25708472 + (TG)n Simple_repeat Simple_repeat 1 34 0 305 299 254 6 chr15 59987282 59987459 -25708295 + MIR SINE MIR 17 237 -25 1782 232 111 29 chr15 59988935 59989365 -25706389 - LTR48B LTR ERV1 0 644 150 1325 62 128 43 chr15 59989365 59989576 -25706178 + MER30 DNA MER1_type 1 229 -1 1782 232 111 29 chr15 59989576 59989740 -25706014 - LTR48B LTR ERV1 -494 150 1 302 0 26 0 chr15 59990194 59990232 -25705522 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1847 124 0 4 chr15 59990235 59990501 -25705253 - AluSx SINE Alu -31 281 17 242 304 0 96 chr15 59990545 59990660 -25705094 + L2 LINE L2 3209 3312 -1 360 280 110 34 chr15 59990682 59990800 -25704954 - MER5A DNA MER1_type -5 184 47 226 176 20 0 chr15 59991033 59991084 -25704670 + (TA)n Simple_repeat Simple_repeat 1 52 0 2131 125 0 0 chr15 59991107 59991410 -25704344 + AluSx SINE Alu 1 303 -9 304 339 36 50 chr15 59991444 59991745 -25704009 + L2 LINE L2 592 888 -2426 1875 221 99 107 chr15 59991759 59992645 -25703109 - L2 LINE L2 -9 3304 2415 806 107 38 46 chr15 59992645 59992776 -25702978 - FLAM_C SINE Alu -2 131 2 1875 221 99 107 chr15 59992776 59992965 -25702789 - L2 LINE L2 -898 2415 2226 216 308 64 0 chr15 59994052 59994130 -25701624 + L2 LINE L2 3142 3224 -48 252 0 0 0 chr15 59995255 59995283 -25700471 + (T)n Simple_repeat Simple_repeat 1 28 0 2372 87 0 3 chr15 59995428 59995728 -25700026 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr15 59996340 59996361 -25699393 + AT_rich Low_complexity Low_complexity 1 21 0 2353 193 22 39 chr15 59996395 59996938 -25698816 - L1MA10 LINE L1 -1 6333 5800 238 200 0 0 chr15 59996946 59996986 -25698768 - MER2 DNA MER2_type -24 321 282 * 691 250 71 6 chr15 59996961 59997129 -25698625 - MER8 DNA MER2_type -60 179 1 345 82 0 0 chr15 59997137 59997186 -25698568 + (TG)n Simple_repeat Simple_repeat 2 50 0 1477 163 115 15 chr15 59997941 59998211 -25697543 + AluSg SINE Alu 3 299 -11 830 163 104 0 chr15 59998211 59998346 -25697408 + AluJb SINE Alu 134 282 -30 207 100 0 0 chr15 59998766 59998796 -25696958 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 1579 183 28 17 chr15 59999533 59999823 -25695931 - AluJo SINE Alu -14 298 6 279 0 0 0 chr15 59999831 59999862 -25695892 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3786 100 0 14 chr15 59999881 60000399 -25695355 - MER9 LTR ERVK 0 511 1 2392 75 0 43 chr15 60000520 60000842 -25694912 - AluY SINE Alu -3 308 1 318 291 48 30 chr15 60001984 60002178 -25693576 + MIR SINE MIR 13 210 -52 921 107 0 0 chr15 60002807 60002928 -25692826 - AluJb SINE Alu -191 121 1 193 362 43 26 chr15 60003070 60003186 -25692568 + L2 LINE L2 3192 3309 -4 2050 103 35 24 chr15 60003847 60004137 -25691617 + AluSx SINE Alu 1 293 -19 821 147 70 19 chr15 60005868 60006025 -25689729 - L1MB3 LINE L1 0 6183 6019 249 267 40 30 chr15 60006437 60006538 -25689216 + MIR3 SINE MIR 98 199 -9 256 226 118 21 chr15 60007307 60007400 -25688354 - MLT1K LTR MaLR -119 469 368 429 306 8 8 chr15 60007427 60007561 -25688193 - MLT1K LTR MaLR -329 259 126 1951 149 0 0 chr15 60007969 60008302 -25687452 - AluJb SINE Alu 0 333 1 32 0 0 0 chr15 60008601 60008633 -25687121 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 60010543 60010564 -25685190 + AT_rich Low_complexity Low_complexity 1 21 0 325 231 0 0 chr15 60012879 60012944 -25682810 - L2 LINE L2 0 3313 3249 182 321 58 47 chr15 60012966 60013156 -25682598 - L2 LINE L2 -1133 2181 1990 2341 139 61 20 chr15 60013413 60013822 -25681932 + MSTB LTR MaLR 1 426 0 332 170 0 0 chr15 60015301 60015354 -25680400 - Tigger7 DNA MER2_type -35 2456 2404 * 738 159 69 0 chr15 60015353 60015498 -25680256 - Tigger7 DNA MER2_type -201 532 378 795 137 68 0 chr15 60015501 60015647 -25680107 - Tigger7 DNA MER2_type -201 532 377 2800 168 65 12 chr15 60015649 60016154 -25679600 - Tigger7 DNA MER2_type -201 532 1 2180 192 64 57 chr15 60016154 60016670 -25679084 - MLT2B3 LTR ERVL -41 508 3 1455 173 50 18 chr15 60017589 60017890 -25677864 - AluJb SINE Alu 0 310 1 258 277 101 48 chr15 60019071 60019259 -25676495 - L1ME3A LINE L1 -8 6162 5965 1563 156 73 0 chr15 60019409 60019684 -25676070 - AluJo SINE Alu -17 295 1 732 59 29 0 chr15 60019706 60019808 -25675946 + L1PB2 LINE L1 6045 6149 -2 847 271 96 31 chr15 60019826 60020497 -25675257 - L1ME3A LINE L1 -356 5806 5094 396 262 200 7 chr15 60022353 60022643 -25673111 - L1ME LINE L1 -567 5603 5258 649 283 80 22 chr15 60022676 60022952 -25672802 - MLT1J LTR MaLR -151 360 69 236 309 12 36 chr15 60023789 60023873 -25671881 - L2 LINE L2 -15 3257 3176 260 287 66 81 chr15 60025010 60025085 -25670669 - MIR SINE MIR -32 230 156 2100 120 0 32 chr15 60025085 60025393 -25670361 + AluSx SINE Alu 1 298 -14 260 287 66 81 chr15 60025393 60025453 -25670301 - MIR SINE MIR -106 156 97 1415 188 3 50 chr15 60025477 60025780 -25669974 + AluJo SINE Alu 1 289 -23 280 356 48 16 chr15 60026462 60026650 -25669104 + MIR SINE MIR 69 262 0 569 243 96 6 chr15 60026848 60027025 -25668729 - MARNA DNA Mariner -140 446 254 40 49 0 0 chr15 60027199 60027260 -25668494 + AT_rich Low_complexity Low_complexity 1 61 0 1154 190 18 5 chr15 60027322 60027543 -25668211 + L1MD3 LINE L1 7719 7942 -53 1257 139 5 0 chr15 60027547 60027734 -25668020 - AluSg/x SINE Alu 0 310 123 336 197 0 0 chr15 60027737 60027803 -25667951 + L1MD3 LINE L1 7930 7995 0 1051 116 52 23 chr15 60027853 60028026 -25667728 + L1MC1 LINE L1 6156 6333 0 1605 138 112 4 chr15 60031699 60031968 -25663786 - AluJb SINE Alu -13 299 2 230 213 88 0 chr15 60032241 60032321 -25663433 + L1ME4a LINE L1 3723 3809 -2337 327 271 79 73 chr15 60032801 60033104 -25662650 + L1ME4a LINE L1 3884 4188 -1958 384 240 33 8 chr15 60033111 60033232 -25662522 + L1ME1 LINE L1 6040 6163 -3 * 1013 257 107 23 chr15 60033224 60033750 -25662004 + L1ME4a LINE L1 4161 4730 -1416 33 25 0 0 chr15 60033904 60033944 -25661810 + AT_rich Low_complexity Low_complexity 1 40 0 850 161 123 0 chr15 60033998 60034153 -25661601 + AluSg/x SINE Alu 129 302 -10 588 316 103 17 chr15 60034538 60034955 -25660799 + L1ME4a LINE L1 5409 5861 -260 1227 118 0 12 chr15 60034957 60035126 -25660628 + FRAM SINE Alu 1 166 -10 2070 142 0 7 chr15 60035311 60035614 -25660140 - AluJo SINE Alu -11 301 1 3705 114 31 15 chr15 60036148 60036532 -25659222 - L1MB3 LINE L1 -10 6173 5775 2290 116 39 14 chr15 60036532 60036887 -25658867 - THE1B LTR MaLR 0 364 1 3705 114 31 15 chr15 60036887 60037090 -25658664 - L1MB3 LINE L1 -408 5775 5577 2955 113 12 0 chr15 60037112 60037529 -25658225 - L1PA10 LINE L1 0 6168 5747 1954 106 6 75 chr15 60037539 60037861 -25657893 - AluSg SINE Alu -10 300 1 289 217 43 0 chr15 60038291 60038360 -25657394 + MIR SINE MIR 79 150 -112 25 31 0 0 chr15 60038996 60039028 -25656726 + AT_rich Low_complexity Low_complexity 1 32 0 252 136 30 30 chr15 60039233 60039299 -25656455 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 510 211 29 99 chr15 60039313 60039371 -25656383 - L1ME3 LINE L1 -221 5941 5880 2177 104 7 0 chr15 60039371 60039668 -25656086 - AluSg SINE Alu -11 299 1 510 211 29 99 chr15 60039668 60039796 -25655958 - L1ME3 LINE L1 -282 5880 5773 1875 156 3 7 chr15 60039796 60040097 -25655657 - AluJb SINE Alu -12 300 1 510 211 29 99 chr15 60040097 60040151 -25655603 - L1ME3 LINE L1 -389 5773 5717 476 234 0 47 chr15 60040194 60040322 -25655432 - MER5B DNA MER1_type -4 174 53 293 260 0 0 chr15 60040386 60040459 -25655295 - MER5A DNA MER1_type -80 109 37 622 281 112 10 chr15 60040477 60040843 -25654911 - L1ME3 LINE L1 -540 5630 5217 2199 116 3 7 chr15 60041030 60041340 -25654414 + AluSx SINE Alu 1 309 -3 2242 116 0 0 chr15 60041513 60041816 -25653938 - AluSx SINE Alu -9 303 1 557 184 128 28 chr15 60041876 60042017 -25653737 - L2 LINE L2 0 3313 3159 532 247 219 0 chr15 60042174 60042352 -25653402 + MIR SINE MIR 45 261 -1 398 132 88 0 chr15 60043322 60043390 -25652364 + MER5A DNA MER1_type 2 75 -114 1238 162 72 14 chr15 60043392 60043432 -25652322 + AluJb SINE Alu 1 37 -275 3793 141 6 35 chr15 60043432 60044086 -25651668 - MER41B LTR ERV1 0 635 1 1238 162 72 14 chr15 60044086 60044267 -25651487 + AluJb SINE Alu 37 235 -77 1696 142 126 31 chr15 60045012 60045077 -25650677 + MER7A DNA MER2_type 1 58 -2980 2248 103 0 7 chr15 60045077 60045412 -25650342 - AluSx SINE Alu 0 333 1 1696 142 126 31 chr15 60045412 60045663 -25650091 + MER7A DNA MER2_type 58 346 0 2598 181 13 71 chr15 60045666 60046156 -25649598 - MLT2B3 LTR ERVL -40 514 -3 208 0 0 0 chr15 60046156 60046179 -25649575 + (TTTG)n Simple_repeat Simple_repeat 2 108 0 2253 103 0 0 chr15 60046179 60046461 -25649293 - AluSg SINE Alu -28 282 1 2598 181 13 71 chr15 60046461 60046515 -25649239 - MLT2B3 LTR ERVL -497 57 1 4759 129 29 1 chr15 60046771 60047491 -25648263 + Tigger2 DNA MER2_type 5 744 -1974 1352 148 62 0 chr15 60047552 60047795 -25647959 + Tigger2 DNA MER2_type 2461 2718 0 229 288 112 27 chr15 60047876 60048055 -25647699 - L2 LINE L2 -20 3252 3006 850 122 14 0 chr15 60048237 60048376 -25647378 + AluJb SINE Alu 1 141 -171 308 281 94 69 chr15 60048390 60048550 -25647204 + L1ME4a LINE L1 5260 5423 -2619 26 50 0 0 chr15 60048553 60048593 -25647161 + AT_rich Low_complexity Low_complexity 1 40 0 749 182 113 19 chr15 60048594 60048753 -25647001 - FAM SINE Alu 0 175 2 277 261 36 9 chr15 60048759 60048870 -25646884 - HAL1 LINE L1 -4 2503 2390 2068 116 0 0 chr15 60049076 60049369 -25646385 + AluSx SINE Alu 1 293 -19 1107 258 124 28 chr15 60049379 60049459 -25646295 - L1MC/D LINE L1 -1990 5818 5747 180 0 0 0 chr15 60049459 60049479 -25646275 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1107 258 124 28 chr15 60049479 60049825 -25645929 - L1MC/D LINE L1 -2061 5747 5351 271 411 0 8 chr15 60049868 60049997 -25645757 - L2 LINE L2 -4 3268 3141 256 259 122 20 chr15 60050058 60050205 -25645549 + L1ME4a LINE L1 5944 6105 -16 196 222 93 0 chr15 60052310 60052364 -25643390 - MIR3 SINE MIR -23 185 127 330 256 12 0 chr15 60052412 60052494 -25643260 - MIR SINE MIR -84 124 42 375 249 155 33 chr15 60052648 60052829 -25642925 - MIR SINE MIR -13 249 47 203 197 30 45 chr15 60053763 60053829 -25641925 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 561 291 35 6 chr15 60055714 60055886 -25639868 + MIR SINE MIR 84 260 -2 406 215 13 0 chr15 60058771 60058850 -25636904 - MER5A DNA MER1_type -78 111 32 371 256 66 90 chr15 60058911 60059122 -25636632 - L3b LINE CR1 -217 1366 1161 349 337 72 18 chr15 60059505 60059671 -25636083 - L2 LINE L2 -21 3251 3077 1314 231 38 3 chr15 60060265 60060555 -25635199 - AluJb SINE Alu -2 300 1 351 0 0 0 chr15 60060586 60060625 -25635129 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr15 60062197 60062218 -25633536 + AT_rich Low_complexity Low_complexity 1 21 0 2224 115 0 0 chr15 60062218 60062530 -25633224 + AluSq SINE Alu 1 312 -1 1079 193 5 10 chr15 60062921 60063128 -25632626 - MER96B DNA MER1_type? -211 206 1 24 0 0 0 chr15 60063859 60063883 -25631871 + AT_rich Low_complexity Low_complexity 1 24 0 258 174 256 47 chr15 60064192 60064278 -25631476 + L2 LINE L2 3210 3313 0 259 340 84 52 chr15 60064498 60064689 -25631065 - MIR SINE MIR -54 208 12 296 342 65 56 chr15 60064877 60065295 -25630459 - L2 LINE L2 -94 3178 2733 515 330 70 22 chr15 60066401 60066631 -25629123 + MIR SINE MIR 4 244 -18 233 265 20 0 chr15 60066862 60066911 -25628843 + L2 LINE L2 3162 3211 -61 211 224 52 0 chr15 60066958 60067016 -25628738 - MIR SINE MIR -7 255 195 387 289 32 19 chr15 60067643 60067799 -25627955 + MER103 DNA DNA 9 166 0 395 250 50 25 chr15 60068355 60068475 -25627279 - L2 LINE L2 0 3313 3191 1560 161 27 13 chr15 60068477 60068776 -25626978 - MER33 DNA MER1_type 0 324 22 590 296 83 61 chr15 60069025 60069568 -25626186 - L2 LINE L2 -337 2977 2423 1446 178 19 4 chr15 60069680 60069944 -25625810 + AluJo SINE Alu 1 268 -44 698 184 0 24 chr15 60070176 60070301 -25625453 - FLAM_A SINE Alu -11 122 1 695 303 59 33 chr15 60071516 60071820 -25623934 + MLT1I LTR MaLR 18 329 -80 255 250 154 0 chr15 60072158 60072262 -25623492 - L1ME4a LINE L1 -43 6078 5959 340 327 111 26 chr15 60072438 60072769 -25622985 - L1ME4a LINE L1 -2345 5463 5265 188 370 0 0 chr15 60073070 60073151 -25622603 + L3 LINE CR1 374 454 -1123 1546 152 32 28 chr15 60073560 60073843 -25621911 + L1MA4A LINE L1 5604 5887 -416 1666 143 48 17 chr15 60073872 60074050 -25621704 - AluJo SINE Alu -10 302 110 369 0 0 0 chr15 60074050 60074091 -25621663 + (TG)n Simple_repeat Simple_repeat 2 42 0 1666 143 48 17 chr15 60074091 60074205 -25621549 - AluJo SINE Alu -202 110 1 180 314 129 40 chr15 60074328 60074452 -25621302 + L2 LINE L2 3138 3272 0 1240 203 106 101 chr15 60075187 60075733 -25620021 - MLT1H LTR MaLR 0 549 1 1776 175 42 3 chr15 60075766 60076097 -25619657 - MER2 DNA MER2_type 0 344 1 492 274 52 8 chr15 60076750 60076930 -25618824 + MIR3 SINE MIR 7 192 -60 676 210 22 0 chr15 60076948 60077086 -25618668 - MLT1A1 LTR MaLR 0 365 225 447 307 10 54 chr15 60077597 60077802 -25617952 - MIR SINE MIR -35 227 32 203 358 75 17 chr15 60077809 60077903 -25617851 + MIR3 SINE MIR 59 163 -45 2649 108 6 0 chr15 60077903 60078265 -25617489 - THE1B LTR MaLR 0 364 1 203 358 75 17 chr15 60078265 60078290 -25617464 + MIR3 SINE MIR 163 185 -23 538 354 28 6 chr15 60078421 60078599 -25617155 + MIR3 SINE MIR 9 190 -18 24 53 0 0 chr15 60079626 60079664 -25616090 + AT_rich Low_complexity Low_complexity 1 38 0 528 300 62 18 chr15 60080699 60080926 -25614828 + MARNA DNA Mariner 170 406 -180 1921 136 27 7 chr15 60081259 60081553 -25614201 - AluJo SINE Alu -12 300 1 186 308 58 0 chr15 60082169 60082221 -25613533 - MIR SINE MIR -68 140 86 670 291 29 14 chr15 60083118 60083396 -25612358 + L1ME4a LINE L1 5581 5862 -259 2150 220 45 50 chr15 60083540 60084163 -25611591 - MLT1E3 LTR MaLR -4 620 1 2026 78 44 0 chr15 60084387 60084683 -25611071 - AluY SINE Alu 0 308 1 440 276 5 5 chr15 60084809 60085020 -25610734 + (TCCA)n Simple_repeat Simple_repeat 1 211 0 343 260 130 82 chr15 60085038 60085269 -25610485 - L2 LINE L2 -2 3311 3070 1722 171 0 7 chr15 60085580 60085885 -25609869 - AluSx SINE Alu -9 303 1 826 173 0 29 chr15 60086028 60086201 -25609553 - FAM SINE Alu -12 173 6 434 306 82 12 chr15 60086406 60086576 -25609178 + MIR SINE MIR 4 185 -77 577 229 25 0 chr15 60087214 60087332 -25608422 + MIR SINE MIR 136 256 -6 2139 102 20 0 chr15 60087379 60087674 -25608080 - AluSx SINE Alu -11 301 1 335 313 70 8 chr15 60087686 60087814 -25607940 - MIR SINE MIR -119 143 8 183 323 202 30 chr15 60087917 60088016 -25607738 + L2 LINE L2 3147 3262 -10 2391 62 7 3 chr15 60088072 60088377 -25607377 - AluY SINE Alu -5 306 1 238 184 13 40 chr15 60088532 60088608 -25607146 + L2 LINE L2 2986 3059 -213 202 284 63 63 chr15 60088671 60088766 -25606988 - L2 LINE L2 -252 3020 2926 686 165 15 8 chr15 60088876 60089009 -25606745 - FLAM_C SINE Alu -4 139 6 440 303 7 41 chr15 60089165 60089355 -25606399 + MIR3 SINE MIR 11 192 -63 507 340 27 5 chr15 60089359 60089544 -25606210 + MIR SINE MIR 64 252 -10 518 157 10 0 chr15 60089546 60089648 -25606106 + CT-rich Low_complexity Low_complexity 2 104 0 1654 155 0 40 chr15 60091335 60091671 -25604083 + AluJb SINE Alu 1 324 0 293 302 9 26 chr15 60091978 60092094 -25603660 + MIR SINE MIR 98 211 -51 1152 254 34 31 chr15 60092094 60092449 -25603305 - MLT1I LTR MaLR 0 409 54 21 36 0 0 chr15 60092552 60092580 -25603174 + AT_rich Low_complexity Low_complexity 1 28 0 1869 122 10 35 chr15 60094284 60094595 -25601159 + AluSx SINE Alu 1 303 -9 2278 113 0 3 chr15 60096720 60097020 -25598734 + AluSx SINE Alu 1 299 -13 333 0 0 0 chr15 60098589 60098626 -25597128 + (TG)n Simple_repeat Simple_repeat 1 37 0 478 259 21 60 chr15 60099378 60099529 -25596225 + MIR SINE MIR 11 154 -61 291 374 79 16 chr15 60099719 60099973 -25595781 - L2 LINE L2 -2856 458 189 351 0 0 0 chr15 60100946 60100985 -25594769 + (TG)n Simple_repeat Simple_repeat 2 40 0 260 244 278 17 chr15 60101255 60101370 -25594384 + Charlie8 DNA MER1_type 10 154 -2263 724 249 241 38 chr15 60101401 60101766 -25593988 - MLT1G1 LTR MaLR -57 538 100 462 281 106 20 chr15 60102908 60103107 -25592647 - MIR SINE MIR -10 252 37 369 279 45 18 chr15 60103683 60103819 -25591935 + MIR SINE MIR 7 156 -58 * 519 359 24 20 chr15 60103814 60104065 -25591689 + MIR SINE MIR 11 262 0 237 365 56 0 chr15 60104597 60104704 -25591050 - L2 LINE L2 -609 2705 2593 255 300 25 0 chr15 60105367 60105447 -25590307 + L2 LINE L2 3191 3272 0 232 304 104 52 chr15 60106094 60106209 -25589545 + MIR SINE MIR 1 122 -86 201 74 0 0 chr15 60106227 60106254 -25589500 + (CAA)n Simple_repeat Simple_repeat 2 28 0 206 167 28 0 chr15 60107061 60107097 -25588657 - MIR SINE MIR -112 150 114 444 274 90 49 chr15 60108354 60108405 -25587349 - MIR SINE MIR -11 251 204 207 100 0 0 chr15 60108405 60108435 -25587319 + (TG)n Simple_repeat Simple_repeat 2 31 0 444 274 90 49 chr15 60108435 60108606 -25587148 - MIR SINE MIR -58 204 20 336 249 180 30 chr15 60110077 60110228 -25585526 - MIR SINE MIR -65 143 20 1030 118 0 7 chr15 60110552 60110688 -25585066 + AluSx SINE Alu 47 181 -131 423 325 73 10 chr15 60111330 60111536 -25584218 - MIR SINE MIR -7 255 37 774 171 68 51 chr15 60111638 60111814 -25583940 - MER5A DNA MER1_type -5 184 6 555 254 0 8 chr15 60111878 60112008 -25583746 + MER3 DNA MER1_type 1 129 -80 2415 88 0 3 chr15 60112008 60112316 -25583438 - AluSc SINE Alu -2 307 1 886 60 40 87 chr15 60112423 60112573 -25583181 - MER30B DNA MER1_type -44 146 4 2183 98 3 7 chr15 60113116 60113444 -25582310 + AluSx SINE Alu 1 327 0 1249 115 0 0 chr15 60113444 60113609 -25582145 + AluSq SINE Alu 133 297 -16 256 203 0 81 chr15 60113851 60113925 -25581829 + MIR3 SINE MIR 93 160 -48 426 250 19 0 chr15 60113928 60114032 -25581722 + MER5A DNA MER1_type 4 109 -80 189 211 11 133 chr15 60115118 60115208 -25580546 - MIR SINE MIR -72 190 112 * 417 247 0 0 chr15 60115185 60115262 -25580492 + MIR SINE MIR 21 97 -165 317 218 218 0 chr15 60115259 60115360 -25580394 + MER5A DNA MER1_type 67 189 0 * 193 303 15 15 chr15 60115360 60115414 -25580340 + MIR3 SINE MIR 154 207 -1 827 262 54 5 chr15 60115423 60115644 -25580110 + MIR SINE MIR 6 237 -25 235 284 21 84 chr15 60115665 60115737 -25580017 - MIR SINE MIR -106 156 90 2586 108 10 49 chr15 60115737 60116143 -25579611 - MLT1B LTR MaLR 0 390 1 235 284 21 84 chr15 60116143 60116165 -25579589 - MIR SINE MIR -172 90 68 600 251 58 37 chr15 60116581 60116772 -25578982 - MIR SINE MIR -67 195 1 180 322 208 7 chr15 60116824 60116973 -25578781 - MIR SINE MIR -70 192 14 184 216 68 80 chr15 60117984 60118072 -25577682 + L3 LINE CR1 1405 1491 -86 288 323 114 12 chr15 60118255 60118422 -25577332 - MIR3 SINE MIR -5 203 20 1585 206 50 79 chr15 60119289 60119360 -25576394 - MLT1J LTR MaLR -29 482 411 1893 115 65 0 chr15 60119360 60119654 -25576100 + AluSx SINE Alu 4 314 0 1585 206 50 79 chr15 60119654 60120076 -25575678 - MLT1J LTR MaLR -100 411 1 504 256 56 0 chr15 60120158 60120283 -25575471 - MIR3 SINE MIR -6 202 71 367 229 130 30 chr15 60120867 60120998 -25574756 + MIR3 SINE MIR 16 159 -49 1060 222 42 4 chr15 60121000 60121261 -25574493 - MER102b DNA MER1_type 0 341 71 2015 176 0 3 chr15 60121830 60122143 -25573611 - AluJb SINE Alu 0 312 1 2210 141 33 28 chr15 60123691 60124053 -25571701 - THE1B LTR MaLR 0 364 1 477 321 21 32 chr15 60125233 60125420 -25570334 - MIR3 SINE MIR -9 199 15 1801 132 57 27 chr15 60126061 60126394 -25569360 - MER2 DNA MER2_type 0 344 2 1926 156 7 0 chr15 60127261 60127571 -25568183 - AluSx SINE Alu 0 312 1 911 285 74 59 chr15 60128000 60128755 -25566999 - L2 LINE L2 0 3313 2545 555 282 53 6 chr15 60129084 60129254 -25566500 - MIR SINE MIR -38 224 47 372 43 0 0 chr15 60129585 60129631 -25566123 + (CA)n Simple_repeat Simple_repeat 1 46 0 335 312 82 24 chr15 60129925 60130095 -25565659 - L1M4 LINE L1 -1434 4712 4533 506 86 151 0 chr15 60130220 60130313 -25565441 + L1MB1 LINE L1 6060 6166 -2 23 0 0 0 chr15 60130314 60130337 -25565417 + AT_rich Low_complexity Low_complexity 1 23 0 1371 136 5 0 chr15 60131750 60131963 -25563791 - L1PA10 LINE L1 -5 6163 5950 716 303 42 4 chr15 60132419 60132660 -25563094 + MIR SINE MIR 13 262 0 331 330 101 13 chr15 60133027 60133254 -25562500 - L2 LINE L2 -348 2966 2720 843 235 67 62 chr15 60133384 60133789 -25561965 - MER39 LTR ERV1 0 707 301 342 269 58 0 chr15 60133767 60133871 -25561883 - MER34 LTR ERV1 -428 114 5 * 1405 105 214 51 chr15 60134917 60135174 -25560580 + AluY SINE Alu 1 299 -2 588 200 83 0 chr15 60135766 60135886 -25559868 - MER96 DNA MER1_type? -21 154 25 263 163 163 12 chr15 60135895 60135975 -25559779 + MIR SINE MIR 99 190 -72 28 0 0 0 chr15 60136009 60136037 -25559717 + AT_rich Low_complexity Low_complexity 1 28 0 2048 125 21 0 chr15 60136037 60136325 -25559429 + AluSx SINE Alu 1 294 -18 270 81 0 0 chr15 60136326 60136363 -25559391 + (AAATG)n Simple_repeat Simple_repeat 4 40 0 344 274 65 16 chr15 60137218 60137342 -25558412 - L2 LINE L2 -18 3254 3125 704 220 73 0 chr15 60137413 60137563 -25558191 + MIR SINE MIR 46 206 -56 748 192 0 33 chr15 60137574 60137725 -25558029 + MER5B DNA MER1_type 2 147 -31 374 237 104 20 chr15 60139501 60139682 -25556072 - MLT1H LTR MaLR -235 174 1 358 188 12 24 chr15 60139856 60139941 -25555813 - LTR67 LTR ERVL 0 557 474 225 281 56 62 chr15 60140106 60140266 -25555488 - MLT1K LTR MaLR -394 194 36 1070 233 36 4 chr15 60141299 60141552 -25554202 + MIR SINE MIR 2 262 0 830 146 0 22 chr15 60141707 60141844 -25553910 - AluJo SINE Alu -178 134 1 2511 89 0 0 chr15 60142064 60142368 -25553386 + AluSg SINE Alu 1 304 -6 489 288 9 0 chr15 60142379 60142490 -25553264 - L2 LINE L2 -27 3245 3134 671 78 10 0 chr15 60143718 60143821 -25551933 + (TG)n Simple_repeat Simple_repeat 2 105 0 458 314 0 0 chr15 60144340 60144461 -25551293 - MIR SINE MIR -44 218 98 883 189 29 53 chr15 60144473 60144550 -25551204 - MER3 DNA MER1_type -8 201 124 2485 87 0 0 chr15 60144550 60144849 -25550905 + AluSq SINE Alu 1 299 -14 883 189 29 53 chr15 60144849 60144977 -25550777 - MER3 DNA MER1_type -85 124 1 278 220 154 22 chr15 60145161 60145252 -25550502 + MER102b DNA MER1_type 230 332 -9 2251 121 3 3 chr15 60145563 60145870 -25549884 - AluSx SINE Alu -5 307 1 982 192 14 51 chr15 60145872 60146086 -25549668 - MER20 DNA MER1_type -13 206 1 1688 261 98 19 chr15 60146088 60146831 -25548923 - L1M4 LINE L1 -869 5277 4476 288 91 0 0 chr15 60146982 60147026 -25548728 + (GA)n Simple_repeat Simple_repeat 2 45 0 246 300 100 0 chr15 60147186 60147276 -25548478 - L2 LINE L2 -205 3067 2969 225 196 0 0 chr15 60147974 60148020 -25547734 + T-rich Low_complexity Low_complexity 1 46 0 447 273 41 0 chr15 60150684 60150805 -25544949 - MIR SINE MIR -115 147 22 381 22 0 0 chr15 60151187 60151233 -25544521 + (TG)n Simple_repeat Simple_repeat 2 47 0 463 343 25 5 chr15 60151713 60151911 -25543843 - MIR SINE MIR -8 254 53 851 243 104 0 chr15 60152981 60153203 -25542551 - MER102b DNA MER1_type -95 246 2 415 313 136 5 chr15 60153688 60153902 -25541852 + MIR SINE MIR 2 243 -19 2376 111 0 0 chr15 60154350 60154656 -25541098 + AluSq SINE Alu 1 306 -7 449 309 124 5 chr15 60155007 60155208 -25540546 - MIR SINE MIR -25 237 13 329 292 106 0 chr15 60155210 60155323 -25540431 - L2 LINE L2 0 3313 3189 319 269 46 39 chr15 60155777 60155907 -25539847 - MIR3 SINE MIR -33 175 45 222 190 35 0 chr15 60156916 60156974 -25538780 + (TA)n Simple_repeat Simple_repeat 1 60 0 1745 157 4 0 chr15 60157083 60157338 -25538416 + AluJo SINE Alu 34 289 -23 378 289 32 39 chr15 60158774 60158930 -25536824 + MER5B DNA MER1_type 1 155 -23 1653 196 0 21 chr15 60158963 60159249 -25536505 - AluSx SINE Alu -32 280 1 180 0 0 0 chr15 60160978 60160998 -25534756 + (GA)n Simple_repeat Simple_repeat 2 21 0 2026 160 10 7 chr15 60161577 60161884 -25533870 - AluSx SINE Alu -4 308 1 233 330 93 8 chr15 60162682 60162800 -25532954 - L2 LINE L2 -4 3309 3182 234 305 22 0 chr15 60163463 60163569 -25532185 + MIR SINE MIR 4 113 -95 297 122 14 108 chr15 60163762 60163836 -25531918 + MADE1 DNA Mariner 2 68 -12 189 345 36 0 chr15 60164804 60164888 -25530866 - L2 LINE L2 -1037 2277 2191 245 346 0 31 chr15 60165900 60166027 -25529727 - MIR SINE MIR 0 262 140 1600 157 38 24 chr15 60166228 60166521 -25529233 + AluJo SINE Alu 11 307 -5 434 313 61 0 chr15 60166564 60166727 -25529027 - MIR SINE MIR -59 203 31 2015 129 9 49 chr15 60166807 60167132 -25528622 - AluSx SINE Alu 0 312 1 1288 227 26 40 chr15 60167210 60167589 -25528165 + L1ME2 LINE L1 5781 6154 -10 230 209 327 9 chr15 60168017 60168127 -25527627 - MIR3 SINE MIR -63 145 1 355 170 71 0 chr15 60168941 60169029 -25526725 - MER5A DNA MER1_type -90 99 4 583 296 210 3 chr15 60169034 60169538 -25526216 - L2 LINE L2 -83 3230 2609 2282 95 3 38 chr15 60169741 60170056 -25525698 + AluSp SINE Alu 1 304 -9 1737 240 100 12 chr15 60170090 60170578 -25525176 - MLT1K LTR MaLR -2 586 56 437 228 97 55 chr15 60170935 60171080 -25524674 + MER21B LTR ERV1 656 806 -57 229 308 77 11 chr15 60171213 60171304 -25524450 + MER5A DNA MER1_type 65 161 -28 243 190 0 0 chr15 60171314 60171372 -25524382 + (CA)n Simple_repeat Simple_repeat 1 58 0 284 255 33 148 chr15 60172276 60172519 -25523235 + L2 LINE L2 3099 3313 0 769 240 39 15 chr15 60174091 60174295 -25521459 - MIR SINE MIR -25 237 29 223 290 194 16 chr15 60174404 60174528 -25521226 + L3 LINE CR1 1083 1228 -349 897 174 0 43 chr15 60175470 60175631 -25520123 + FRAM SINE Alu 1 154 -22 2457 180 37 4 chr15 60175640 60176128 -25519626 + MLT1D LTR MaLR 1 504 -1 576 202 162 7 chr15 60177498 60177669 -25518085 - MLT1J LTR MaLR -285 161 3 2355 91 10 0 chr15 60178506 60178813 -25516941 + AluSx SINE Alu 1 310 -2 393 284 123 19 chr15 60179196 60179351 -25516403 - MER20B DNA MER1_type -17 202 32 503 257 62 17 chr15 60179414 60179593 -25516161 - MER117 DNA MER1_type 0 197 11 309 313 0 0 chr15 60181119 60181202 -25514552 + Charlie8 DNA MER1_type 7 89 -2328 965 251 8 87 chr15 60181288 60181658 -25514096 + MER102b DNA MER1_type 1 341 0 585 238 26 44 chr15 60181820 60182009 -25513745 + MIR SINE MIR 13 192 -62 632 301 60 5 chr15 60182207 60182406 -25513348 + MIR SINE MIR 23 232 -30 261 0 0 0 chr15 60182753 60182782 -25512972 + (CA)n Simple_repeat Simple_repeat 1 29 0 290 309 27 0 chr15 60182806 60182916 -25512838 + MIR SINE MIR 64 176 -86 288 278 41 0 chr15 60183180 60183349 -25512405 + (GGCTG)n Simple_repeat Simple_repeat 4 179 0 318 329 122 5 chr15 60184680 60184902 -25510852 + MIR SINE MIR 2 249 -13 447 240 82 41 chr15 60185002 60185148 -25510606 - MER103 DNA DNA -3 163 12 230 267 17 0 chr15 60185663 60185723 -25510031 - MER91 DNA MER1_type -3 137 77 3659 146 11 66 chr15 60185954 60186685 -25509069 - LTR8 LTR ERV1 0 691 1 394 238 25 41 chr15 60187355 60187477 -25508277 - MER94 DNA DNA -10 124 5 307 100 50 0 chr15 60187789 60187849 -25507905 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 218 214 0 0 chr15 60187915 60187957 -25507797 - L3 LINE CR1 -5 1572 1531 356 336 27 7 chr15 60188538 60188684 -25507070 + MIR3 SINE MIR 36 184 -24 279 252 42 8 chr15 60188999 60189115 -25506639 + MIR SINE MIR 82 205 -57 2118 153 0 0 chr15 60189218 60189525 -25506229 + AluJb SINE Alu 1 307 -5 730 154 33 115 chr15 60189552 60189734 -25506020 + MER20 DNA MER1_type 1 167 -52 354 314 72 41 chr15 60189920 60190114 -25505640 + L3 LINE CR1 1365 1564 -13 232 337 0 20 chr15 60190130 60190231 -25505523 - MIR3 SINE MIR -22 186 88 2269 93 0 10 chr15 60190689 60190980 -25504774 + AluSg SINE Alu 6 293 -17 254 326 12 0 chr15 60191026 60191112 -25504642 + L2 LINE L2 3186 3272 0 452 278 99 38 chr15 60192545 60192757 -25502997 - MIR SINE MIR -24 238 14 211 194 0 0 chr15 60192798 60192834 -25502920 + MIR SINE MIR 114 149 -59 257 257 27 14 chr15 60193830 60193904 -25501850 - L2 LINE L2 -1 3271 3197 479 309 57 6 chr15 60194887 60195062 -25500692 - MIR SINE MIR -43 219 36 285 202 0 6 chr15 60195480 60195552 -25500202 + MIR SINE MIR 67 136 -72 429 258 0 0 chr15 60195568 60195661 -25500093 - L3 LINE CR1 -503 1074 982 341 263 0 0 chr15 60195931 60196011 -25499743 - L2 LINE L2 0 3272 3193 185 253 147 0 chr15 60196370 60196445 -25499309 - MIR SINE MIR -62 146 61 347 254 186 21 chr15 60197227 60197420 -25498334 - MIR SINE MIR -10 252 28 194 128 26 0 chr15 60197710 60197749 -25498005 + GA-rich Low_complexity Low_complexity 2 41 0 24 32 0 0 chr15 60197894 60197925 -25497829 + AT_rich Low_complexity Low_complexity 1 31 0 2379 101 0 0 chr15 60197989 60198285 -25497469 - AluSg SINE Alu -14 296 1 360 314 168 47 chr15 60198331 60198653 -25497101 + L3 LINE CR1 1214 1574 -3 697 329 147 39 chr15 60200526 60201016 -25494738 + L3 LINE CR1 932 1474 -103 234 91 0 0 chr15 60202730 60202763 -25492991 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 197 33 33 0 chr15 60202805 60202835 -25492919 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 200 176 0 0 chr15 60203984 60204018 -25491736 + (TG)n Simple_repeat Simple_repeat 2 35 0 319 253 0 27 chr15 60204652 60204727 -25491027 - L2 LINE L2 0 3313 3241 189 147 0 0 chr15 60204729 60204763 -25490991 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 513 227 53 23 chr15 60204814 60204946 -25490808 + MIR SINE MIR 8 143 -119 919 143 113 4 chr15 60205006 60205237 -25490517 - Charlie5 DNA MER1_type 0 2624 2369 288 114 0 0 chr15 60205244 60205288 -25490466 - Charlie5 DNA MER1_type -2421 191 148 26 0 0 0 chr15 60205290 60205316 -25490438 + AT_rich Low_complexity Low_complexity 1 26 0 368 222 46 0 chr15 60205316 60205424 -25490330 - L1MA4 LINE L1 0 6300 6188 365 203 0 0 chr15 60205562 60205636 -25490118 - Charlie5 DNA MER1_type -2510 102 29 216 279 49 0 chr15 60205823 60205884 -25489870 - MIR SINE MIR -59 203 140 346 328 112 27 chr15 60206110 60206512 -25489242 - L2 LINE L2 -1905 1409 974 2481 63 3 25 chr15 60206988 60207303 -25488451 - AluSp SINE Alu -5 308 1 358 335 90 5 chr15 60208293 60208494 -25487260 + MIR SINE MIR 27 250 -12 195 250 71 0 chr15 60208505 60208561 -25487193 - MIR SINE MIR -101 161 102 182 319 229 6 chr15 60208603 60208769 -25486985 - MIR SINE MIR -46 216 14 265 286 74 40 chr15 60209540 60209597 -25486157 - MIR SINE MIR -62 200 146 2142 83 19 0 chr15 60209597 60209862 -25485892 + AluSg SINE Alu 1 270 -40 265 286 74 40 chr15 60209862 60209979 -25485775 - MIR SINE MIR -116 146 20 40 0 0 0 chr15 60212601 60212641 -25483113 + AT_rich Low_complexity Low_complexity 1 40 0 718 261 20 15 chr15 60212708 60212903 -25482851 + MIR SINE MIR 48 243 -19 753 220 92 72 chr15 60213694 60214053 -25481701 - MLT1C LTR MaLR -96 371 6 306 252 84 9 chr15 60214634 60214741 -25481013 + L2 LINE L2 2164 2278 -1036 1441 155 0 0 chr15 60214884 60215103 -25480651 + AluJb SINE Alu 93 311 -1 1657 178 59 7 chr15 60215698 60215865 -25479889 - AluJo SINE Alu -10 302 112 192 40 0 0 chr15 60215865 60215890 -25479864 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1657 178 59 7 chr15 60215890 60216009 -25479745 - AluJo SINE Alu -200 112 1 216 0 0 0 chr15 60216484 60216508 -25479246 + (CA)n Simple_repeat Simple_repeat 2 25 0 1248 217 107 45 chr15 60216508 60216927 -25478827 - MLT2B1 LTR ERVL -75 445 1 21 36 0 0 chr15 60217201 60217229 -25478525 + AT_rich Low_complexity Low_complexity 1 28 0 1994 142 0 7 chr15 60217229 60217517 -25478237 - AluSx SINE Alu -26 286 1 335 239 14 0 chr15 60218771 60218842 -25476912 + MER63 DNA MER1_type 676 747 -89 310 254 0 0 chr15 60218846 60218917 -25476837 + MER63 DNA MER1_type 979 1049 -13 2003 138 3 28 chr15 60218968 60219286 -25476468 + AluJb SINE Alu 3 312 0 1218 264 128 20 chr15 60219661 60220120 -25475634 + LTR33 LTR ERVL 11 519 -2 566 281 82 41 chr15 60220163 60220625 -25475129 + L1ME LINE L1 5293 5773 -348 24724 69 10 0 chr15 60220630 60224849 -25470905 + L1PA6 LINE L1 1892 6153 -1 349 299 66 12 chr15 60225152 60225319 -25470435 + L1ME4a LINE L1 5687 5862 -259 230 209 0 60 chr15 60225515 60225582 -25470172 + L2 LINE L2 2997 3059 -213 2417 96 6 3 chr15 60225895 60226207 -25469547 + AluSp SINE Alu 1 313 0 562 272 92 28 chr15 60227384 60227415 -25468339 - MIR SINE MIR -1 261 233 730 149 45 52 chr15 60227415 60227549 -25468205 + FLAM_C SINE Alu 1 133 0 562 272 92 28 chr15 60227549 60227734 -25468020 - MIR SINE MIR -29 233 31 1905 158 3 7 chr15 60227791 60228083 -25467671 + AluJo SINE Alu 1 291 -21 259 287 58 0 chr15 60228221 60228308 -25467446 + L2 LINE L2 3197 3288 -25 680 212 95 28 chr15 60228446 60228457 -25467297 + MIR SINE MIR 47 56 -206 2284 113 0 0 chr15 60228457 60228758 -25466996 + AluSx SINE Alu 1 301 -11 680 212 95 28 chr15 60228758 60228925 -25466829 + MIR SINE MIR 56 237 -25 262 375 67 27 chr15 60229498 60229871 -25465883 + L2 LINE L2 2370 2757 -557 2288 106 0 7 chr15 60229942 60230243 -25465511 + AluSg SINE Alu 1 299 -11 233 250 0 94 chr15 60230426 60230490 -25465264 + L2 LINE L2 3251 3308 -5 371 259 209 22 chr15 60232247 60232386 -25463368 - MER5A DNA MER1_type -6 183 19 256 298 107 0 chr15 60233449 60233533 -25462221 - MIR SINE MIR -78 130 38 305 281 90 30 chr15 60233655 60233822 -25461932 - MIR SINE MIR 0 262 86 202 396 50 6 chr15 60234198 60234357 -25461397 + MIR3 SINE MIR 22 187 -21 * 297 300 70 0 chr15 60234298 60234398 -25461356 - MIR3 SINE MIR -6 202 96 257 196 18 18 chr15 60235462 60235518 -25460236 + MIR3 SINE MIR 146 201 -7 340 235 147 10 chr15 60236117 60236219 -25459535 - MIR3 SINE MIR -14 194 79 235 299 40 46 chr15 60238283 60238457 -25457297 + MER3 DNA MER1_type 32 204 -5 * 1037 179 0 11 chr15 60238305 60238495 -25457259 - MER3 DNA MER1_type -7 202 15 228 172 0 0 chr15 60238561 60238619 -25457135 + (TG)n Simple_repeat Simple_repeat 2 59 0 267 176 20 0 chr15 60238785 60238836 -25456918 - L2 LINE L2 -3 3269 3218 244 287 118 15 chr15 60239510 60239646 -25456108 - L2 LINE L2 -200 3072 2923 1426 116 56 5 chr15 60240681 60240896 -25454858 - MER30 DNA MER1_type 0 230 5 216 141 31 0 chr15 60240910 60240953 -25454801 + MER5A DNA MER1_type 4 48 -141 2414 100 0 3 chr15 60241415 60241725 -25454029 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr15 60241925 60241946 -25453808 + AT_rich Low_complexity Low_complexity 1 21 0 1364 150 21 21 chr15 60241951 60242028 -25453726 + AluJb SINE Alu 48 124 -188 207 0 0 0 chr15 60242028 60242051 -25453703 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1364 150 21 21 chr15 60242051 60242207 -25453547 + AluJb SINE Alu 123 281 -31 928 143 0 0 chr15 60242372 60242505 -25453249 + AluJb SINE Alu 161 293 -19 767 140 85 61 chr15 60242527 60242789 -25452965 - MER31B LTR ERV1 -80 386 1 1441 204 45 60 chr15 60243004 60243451 -25452303 + MER31B LTR ERV1 1 440 -26 1978 74 74 0 chr15 60243615 60243661 -25452093 - L1PA13 LINE L1 -48 6115 6070 624 235 29 60 chr15 60243661 60243942 -25451812 - L1MA4 LINE L1 -259 6041 5770 490 294 175 19 chr15 60244013 60244333 -25451421 - MLT1L LTR MaLR -51 564 195 2252 123 3 0 chr15 60244609 60244918 -25450836 - AluSx SINE Alu -2 310 1 919 96 8 0 chr15 60245213 60245338 -25450416 - AluSp/q SINE Alu -16 297 172 1794 115 11 63 chr15 60245438 60245725 -25450029 + AluSg SINE Alu 22 293 -17 412 299 138 22 chr15 60247235 60247466 -25448288 - MIR SINE MIR -3 259 2 182 326 79 22 chr15 60247802 60247891 -25447863 + L2 LINE L2 2730 2823 -491 265 257 0 43 chr15 60248171 60248241 -25447513 + L2 LINE L2 3244 3310 -3 598 211 0 0 chr15 60249964 60250068 -25445686 + FLAM_C SINE Alu 14 117 -26 189 0 0 0 chr15 60250084 60250105 -25445649 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1682 159 115 41 chr15 60250135 60250222 -25445532 + L1MB3 LINE L1 5790 5869 -314 2297 75 3 10 chr15 60250222 60250529 -25445225 + AluY SINE Alu 1 305 -6 1682 159 115 41 chr15 60250529 60250806 -25444948 + L1MB3 LINE L1 5869 6181 -2 23 42 0 21 chr15 60251145 60251161 -25444593 + AT_rich Low_complexity Low_complexity 1 16 -31 1541 159 109 41 chr15 60251161 60251500 -25444254 - MLT1A1 LTR MaLR -3 362 1 23 42 0 21 chr15 60251500 60251531 -25444223 + AT_rich Low_complexity Low_complexity 16 47 0 889 283 65 28 chr15 60251637 60251927 -25443827 - MLT1I LTR MaLR -24 385 85 2271 57 0 0 chr15 60252473 60252783 -25442971 - AluY SINE Alu 0 310 1 274 240 10 58 chr15 60253026 60253130 -25442624 - MER94 DNA DNA -35 99 1 300 263 80 8 chr15 60253326 60253456 -25442298 + MIR SINE MIR 11 153 -67 274 320 66 8 chr15 60253625 60253747 -25442007 - MIR SINE MIR -115 147 19 22 56 0 0 chr15 60254407 60254443 -25441311 + GC_rich Low_complexity Low_complexity 1 36 0 31 68 0 0 chr15 60254792 60254851 -25440903 + GC_rich Low_complexity Low_complexity 1 59 0 23 54 0 0 chr15 60255518 60255555 -25440199 + GC_rich Low_complexity Low_complexity 1 37 0 189 211 0 0 chr15 60255632 60255684 -25440070 + (CGG)n Simple_repeat Simple_repeat 3 54 0 2048 45 48 45 chr15 60260075 60260365 -25435389 - AluY SINE Alu -16 295 5 198 0 0 0 chr15 60260369 60260391 -25435363 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr15 60260726 60260748 -25435006 + AT_rich Low_complexity Low_complexity 1 22 0 266 224 47 59 chr15 60261073 60261158 -25434596 - L2 LINE L2 -2 3311 3228 542 204 44 9 chr15 60261243 60261356 -25434398 + MER5A DNA MER1_type 73 189 0 430 203 184 44 chr15 60261934 60262092 -25433662 + MER5A DNA MER1_type 7 186 -3 1502 188 0 11 chr15 60262378 60262660 -25433094 + AluJb SINE Alu 2 280 -32 1718 108 97 28 chr15 60264001 60264320 -25431434 - AluSx SINE Alu 0 343 5 1519 185 3 41 chr15 60266993 60267307 -25428447 - AluJo SINE Alu -10 302 1 929 170 32 27 chr15 60267546 60267734 -25428020 - MER5A DNA MER1_type 0 189 1 666 199 179 0 chr15 60267742 60267893 -25427861 - MER5B DNA MER1_type 0 178 1 366 264 109 29 chr15 60267897 60268161 -25427593 - MLT1J1 LTR MaLR -51 395 73 2697 140 11 18 chr15 60268247 60268682 -25427072 - MSTB1 LTR MaLR 0 432 1 422 278 92 52 chr15 60268740 60268897 -25426857 - L1ME4a LINE L1 -3 6118 5969 2294 100 3 0 chr15 60268897 60269207 -25426547 - AluY SINE Alu 0 311 1 422 278 92 52 chr15 60269207 60269262 -25426492 - L1ME4a LINE L1 -152 5969 5918 2237 102 0 0 chr15 60269262 60269556 -25426198 - AluSq SINE Alu -19 294 1 422 278 92 52 chr15 60269556 60269799 -25425955 - L1ME4a LINE L1 -203 5918 5644 476 269 46 0 chr15 60270079 60270209 -25425545 + MIR3 SINE MIR 33 168 -40 265 188 21 42 chr15 60270741 60270837 -25424917 + T-rich Low_complexity Low_complexity 3 96 0 983 305 77 13 chr15 60272482 60272993 -25422761 - L1ME3A LINE L1 -2 6160 5577 1940 143 7 0 chr15 60273004 60273304 -25422450 - AluSx SINE Alu -10 302 1 374 275 33 0 chr15 60274205 60274296 -25421458 + MER5A DNA MER1_type 9 102 -87 1780 191 74 16 chr15 60274299 60274666 -25421088 + MSTD LTR MaLR 1 388 -8 184 350 0 0 chr15 60274683 60274743 -25421011 + MER5A DNA MER1_type 128 187 -2 * 528 267 49 1 chr15 60274738 60274888 -25420866 + MIR3 SINE MIR 3 156 -52 237 302 57 113 chr15 60275412 60275660 -25420094 - MLT1K LTR MaLR -15 573 340 248 254 0 0 chr15 60277112 60277179 -25418575 + MIR SINE MIR 152 218 -44 229 301 128 23 chr15 60277360 60277493 -25418261 + L2 LINE L2 3121 3267 -5 433 339 40 23 chr15 60278333 60278507 -25417247 - MIR3 SINE MIR -17 191 15 1875 120 14 0 chr15 60278972 60279248 -25416506 + AluSx SINE Alu 1 280 -32 441 0 0 0 chr15 60279248 60279297 -25416457 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 282 103 0 0 chr15 60279516 60279555 -25416199 + MADE1 DNA Mariner 1 39 -41 1205 164 38 82 chr15 60279595 60279912 -25415842 - AluJo SINE Alu -1 311 9 253 194 112 31 chr15 60279947 60280045 -25415709 - LTR33 LTR ERVL -2 519 414 671 247 73 45 chr15 60280147 60280394 -25415360 - LTR33 LTR ERVL -255 266 13 337 160 75 113 chr15 60280962 60281068 -25414686 - L1ME4a LINE L1 -5 6116 6015 1992 98 0 0 chr15 60281099 60281363 -25414391 + AluSg SINE Alu 2 265 -45 485 341 72 31 chr15 60281496 60281910 -25413844 - L2 LINE L2 -673 2641 2211 724 250 36 32 chr15 60281942 60282162 -25413592 - MIR SINE MIR -10 252 32 219 291 81 0 chr15 60282539 60282625 -25413129 - L3 LINE CR1 -733 844 752 264 379 72 0 chr15 60282728 60282881 -25412873 + MIR SINE MIR 34 197 -65 2670 142 40 21 chr15 60283388 60283867 -25411887 - LTR45B LTR ERV1 0 489 2 2409 119 13 24 chr15 60283912 60284289 -25411465 + THE1C LTR MaLR 3 375 0 2614 169 6 66 chr15 60284591 60284966 -25410788 - MER70A LTR ERVL 0 472 133 1625 186 0 22 chr15 60284966 60285283 -25410471 + AluJo SINE Alu 1 310 -2 2614 169 6 66 chr15 60285283 60285409 -25410345 - MER70A LTR ERVL -339 133 1 480 18 0 0 chr15 60285422 60285479 -25410275 + (TG)n Simple_repeat Simple_repeat 2 58 0 342 263 42 0 chr15 60286737 60286832 -25408922 - MIR3 SINE MIR -5 203 105 1796 169 23 75 chr15 60287483 60287868 -25407886 + MLT1A1 LTR MaLR 1 365 0 506 259 103 76 chr15 60288672 60288887 -25406867 - L2 LINE L2 -342 2972 2764 405 39 0 0 chr15 60288887 60288938 -25406816 + (TG)n Simple_repeat Simple_repeat 1 51 0 506 259 103 76 chr15 60288938 60289128 -25406626 - L2 LINE L2 -550 2764 2556 388 284 93 71 chr15 60289128 60289635 -25406119 - L1MC/D LINE L1 -2036 5772 5255 486 270 158 7 chr15 60289856 60290008 -25405746 - MER5A DNA MER1_type -6 183 9 425 268 98 61 chr15 60290444 60290833 -25404921 + MLT1I LTR MaLR 20 409 0 263 257 43 14 chr15 60291256 60291326 -25404428 + L2 LINE L2 3201 3272 0 367 353 59 27 chr15 60291373 60291594 -25404160 + L3 LINE CR1 36 263 -1314 192 286 126 42 chr15 60291705 60291824 -25403930 - MIR SINE MIR -14 248 120 2457 158 48 2 chr15 60292175 60292575 -25403179 + MSTB LTR MaLR 4 421 -5 1492 176 50 13 chr15 60293396 60293697 -25402057 + AluJo SINE Alu 1 312 0 239 234 0 0 chr15 60294243 60294290 -25401464 + GA-rich Low_complexity Low_complexity 2 48 0 303 242 22 44 chr15 60295592 60295683 -25400071 - HAL1b LINE L1 -628 720 632 546 160 38 38 chr15 60295817 60295948 -25399806 - L1MD2 LINE L1 -3 6356 6226 219 69 0 0 chr15 60295948 60295977 -25399777 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 683 144 10 0 chr15 60295982 60296086 -25399668 - FLAM_C SINE Alu -25 118 14 339 192 0 14 chr15 60296095 60296161 -25399593 - L1MC4a LINE L1 -104 7704 7638 1841 126 18 3 chr15 60296161 60296446 -25399308 - AluSx SINE Alu -3 309 21 301 138 0 77 chr15 60296527 60296592 -25399162 - L1MD2 LINE L1 -184 6175 6116 629 153 47 88 chr15 60297015 60297185 -25398569 - MER96B DNA MER1_type? -235 182 20 336 318 123 59 chr15 60297879 60298351 -25397403 + L1MDa LINE L1 1281 1782 -4758 315 274 118 20 chr15 60298320 60298406 -25397348 + HAL1b LINE L1 767 843 -899 * 1334 147 61 70 chr15 60298406 60298718 -25397036 + AluJo SINE Alu 1 309 -3 315 274 118 20 chr15 60298718 60298784 -25396970 + HAL1b LINE L1 843 934 -808 744 161 31 0 chr15 60299154 60299284 -25396470 + AluJb SINE Alu 164 297 -15 2032 110 27 0 chr15 60299303 60299595 -25396159 - AluSx SINE Alu -12 300 1 380 216 103 67 chr15 60299595 60299850 -25395904 - MLT1G1 LTR MaLR -56 539 235 517 294 64 2 chr15 60299918 60300137 -25395617 + L1ME2 LINE L1 5531 5760 -361 267 299 37 9 chr15 60301215 60301322 -25394432 - MLT1K LTR MaLR -466 122 13 571 215 0 0 chr15 60303963 60304070 -25391684 + FLAM_C SINE Alu 6 112 -31 2384 76 3 0 chr15 60304309 60304598 -25391156 + AluSq SINE Alu 1 290 -23 21 0 0 0 chr15 60304612 60304633 -25391121 + AT_rich Low_complexity Low_complexity 1 21 0 1285 213 59 34 chr15 60305209 60305533 -25390221 + L1ME2 LINE L1 5772 6103 -61 914 206 18 0 chr15 60305535 60305705 -25390049 + AluJo SINE Alu 1 173 -139 1887 164 0 3 chr15 60305712 60306005 -25389749 + AluJo SINE Alu 18 309 -3 1547 230 208 4 chr15 60306070 60306609 -25389145 + L1MC4a LINE L1 6351 6999 -809 2482 80 0 0 chr15 60306630 60306929 -25388825 - AluSc SINE Alu -5 304 6 409 244 24 57 chr15 60307002 60307027 -25388727 + L1MC1 LINE L1 5807 5831 -502 706 194 8 15 chr15 60307027 60307161 -25388593 + FLAM_C SINE Alu 1 133 0 409 244 24 57 chr15 60307161 60307344 -25388410 + L1MC1 LINE L1 5831 6008 -325 * 1581 150 85 29 chr15 60307166 60307507 -25388247 + L1MB8 LINE L1 5814 6173 -5 431 286 40 0 chr15 60307674 60307800 -25387954 + MIR3 SINE MIR 45 175 -33 379 221 8 57 chr15 60307954 60308076 -25387678 + MIR SINE MIR 81 196 -66 238 308 33 8 chr15 60308123 60308243 -25387511 + L2 LINE L2 1830 1952 -1362 1764 178 3 32 chr15 60308375 60308690 -25387064 - AluJb SINE Alu -6 306 1 2640 120 28 0 chr15 60308859 60309285 -25386469 + L1MA5 LINE L1 5851 6288 -12 313 272 204 19 chr15 60309594 60309756 -25385998 - MIR SINE MIR 0 262 71 210 279 93 12 chr15 60310098 60310184 -25385570 - MIR SINE MIR -51 211 119 2302 108 0 0 chr15 60310227 60310524 -25385230 - AluSx SINE Alu -15 297 1 489 224 43 0 chr15 60310629 60310745 -25385009 + MIR SINE MIR 77 197 -65 484 272 32 0 chr15 60311132 60311257 -25384497 - MIR3 SINE MIR -1 207 79 186 43 0 0 chr15 60312163 60312186 -25383568 + (CAG)n Simple_repeat Simple_repeat 2 24 0 672 179 15 22 chr15 60313103 60313237 -25382517 + FLAM_C SINE Alu 1 133 0 262 206 130 46 chr15 60313240 60313371 -25382383 - L1MC/D LINE L1 -1983 5825 5684 841 241 96 100 chr15 60313384 60313873 -25381881 - MLT1J LTR MaLR -9 502 16 204 336 39 47 chr15 60314636 60314764 -25380990 - MIR SINE MIR -116 146 20 2379 95 0 0 chr15 60315642 60315937 -25379817 + AluSx SINE Alu 1 295 -17 308 245 57 74 chr15 60315940 60316316 -25379438 + L1P5 LINE L1 5280 5661 -460 301 280 10 20 chr15 60316325 60316425 -25379329 - MIR SINE MIR 0 262 164 231 267 185 14 chr15 60316581 60316727 -25379027 + L1ME4a LINE L1 5903 6073 -48 1220 154 101 32 chr15 60316761 60316914 -25378840 - AluJb SINE Alu -9 303 125 2063 82 0 26 chr15 60316914 60317184 -25378570 - AluSg SINE Alu -14 296 34 1220 154 101 32 chr15 60317184 60317277 -25378477 - AluJb SINE Alu -187 125 40 7461 190 34 12 chr15 60317562 60317608 -25378146 - L1 LINE L1 -1399 4747 4703 1565 38 0 0 chr15 60317608 60317794 -25377960 - L1PA3 LINE L1 0 6155 5970 7461 190 34 12 chr15 60317794 60319227 -25376527 - L1 LINE L1 -1443 4703 3227 2384 94 0 3 chr15 60319227 60319524 -25376230 - AluSg SINE Alu -14 296 1 7461 190 34 12 chr15 60319524 60319676 -25376078 - L1 LINE L1 -2919 3227 3080 3633 185 10 91 chr15 60319677 60321203 -25374551 + L1PB2 LINE L1 4739 6151 0 237 341 58 8 chr15 60321228 60321486 -25374268 - L1 LINE L1 -1141 5005 4735 21 57 0 0 chr15 60321906 60321941 -25373813 + AT_rich Low_complexity Low_complexity 1 35 0 4791 167 36 35 chr15 60321978 60322824 -25372930 - L1MB7 LINE L1 0 6184 5340 2028 142 0 37 chr15 60322824 60323148 -25372606 - AluJb SINE Alu 0 312 1 4791 167 36 35 chr15 60323148 60323472 -25372282 - L1MB7 LINE L1 -844 5340 5018 2134 122 14 0 chr15 60323472 60323789 -25371965 - AluSq SINE Alu 0 313 1 4791 167 36 35 chr15 60323789 60324453 -25371301 - L1MB7 LINE L1 -1166 5018 4350 676 306 63 42 chr15 60324705 60325038 -25370716 + MLT1K LTR MaLR 69 408 -180 1821 133 35 7 chr15 60325097 60325383 -25370371 - AluSx SINE Alu -18 294 1 296 270 0 0 chr15 60325665 60325739 -25370015 + MER69 DNA AcHobo 460 533 -693 1378 227 67 28 chr15 60325867 60326329 -25369425 + MER69 DNA AcHobo 2021 2500 -26 270 0 0 0 chr15 60326445 60326475 -25369279 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 274 68 27 chr15 60326496 60326642 -25369112 + L1ME2 LINE L1 5512 5663 -458 1979 151 7 7 chr15 60326927 60327232 -25368522 - AluSx SINE Alu -3 309 5 264 149 0 0 chr15 60327397 60327444 -25368310 + (CA)n Simple_repeat Simple_repeat 2 48 0 200 269 0 0 chr15 60327464 60327516 -25368238 + (CA)n Simple_repeat Simple_repeat 1 52 0 326 285 115 0 chr15 60327928 60328058 -25367696 + MIR3 SINE MIR 61 205 -3 247 268 10 52 chr15 60329715 60329812 -25365942 + L3b LINE CR1 1286 1378 -205 979 184 73 34 chr15 60330138 60330372 -25365382 + L1ME2 LINE L1 5911 6153 -11 7630 30 1 18 chr15 60330424 60331487 -25364267 + L1PA3 LINE L1 5107 6154 -1 202 228 0 53 chr15 60331568 60331625 -25364129 + MIR SINE MIR 18 71 -137 185 279 44 29 chr15 60332299 60332367 -25363387 - L3b LINE CR1 -111 1472 1404 294 316 126 11 chr15 60332388 60332562 -25363192 + MIR SINE MIR 23 216 -46 313 291 78 35 chr15 60332840 60332981 -25362773 + MIR SINE MIR 106 252 -10 2210 86 0 0 chr15 60333020 60333288 -25362466 + AluSx SINE Alu 17 284 -28 1733 237 27 44 chr15 60333470 60333946 -25361808 + LTR16C LTR ERVL 22 489 -2 297 0 0 0 chr15 60334636 60334669 -25361085 + (CA)n Simple_repeat Simple_repeat 1 33 0 1922 143 14 0 chr15 60334677 60334964 -25360790 - AluJo SINE Alu -21 291 1 214 200 0 0 chr15 60335034 60335074 -25360680 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1835 121 25 32 chr15 60335843 60336123 -25359631 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr15 60336124 60336148 -25359606 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1431 164 119 7 chr15 60336693 60336962 -25358792 - AluJo SINE Alu -3 299 1 200 333 24 48 chr15 60337741 60337909 -25357845 - L2 LINE L2 -177 3095 2932 865 86 9 0 chr15 60338066 60338182 -25357572 + FLAM_A SINE Alu 20 136 -6 205 299 43 43 chr15 60338210 60338327 -25357427 - MIR SINE MIR -85 177 61 201 74 0 0 chr15 60338438 60338465 -25357289 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 231 231 39 0 chr15 60339274 60339326 -25356428 - MIR3 SINE MIR -52 156 103 288 250 157 36 chr15 60339485 60339625 -25356129 + MIR SINE MIR 96 252 -10 326 240 184 73 chr15 60339756 60340164 -25355590 - HAL1b LINE L1 -562 786 334 881 143 0 0 chr15 60340259 60340392 -25355362 - FLAM_C SINE Alu 0 133 1 200 33 0 33 chr15 60340793 60340805 -25354949 + (TGG)n Simple_repeat Simple_repeat 2 13 -17 2248 109 20 0 chr15 60340805 60341107 -25354647 + AluSx SINE Alu 1 308 -4 200 33 0 33 chr15 60341107 60341124 -25354630 + (TGG)n Simple_repeat Simple_repeat 13 30 0 1682 162 20 27 chr15 60341940 60342236 -25353518 + AluJo SINE Alu 1 294 -18 249 33 0 0 chr15 60342622 60342652 -25353102 + (ATG)n Simple_repeat Simple_repeat 1 30 0 293 132 44 59 chr15 60342654 60342722 -25353032 - MIR SINE MIR -9 253 187 1272 154 115 0 chr15 60342768 60343002 -25352752 + MER21A LTR ERV1 1 261 -670 2743 176 43 28 chr15 60343045 60343580 -25352174 + MER21A LTR ERV1 389 931 0 382 211 0 21 chr15 60343580 60343675 -25352079 - MIR SINE MIR -109 153 61 1064 224 42 8 chr15 60344404 60344641 -25351113 - MLT1C LTR MaLR -2 465 221 364 261 62 106 chr15 60344811 60345053 -25350701 + MLT1K LTR MaLR 231 453 -135 2066 106 35 0 chr15 60345053 60345337 -25350417 - AluSx SINE Alu -18 294 1 364 261 62 106 chr15 60345337 60345451 -25350303 + MLT1K LTR MaLR 453 571 -17 346 286 143 6 chr15 60345519 60345694 -25350060 - L1M4 LINE L1 -2198 3948 3750 1909 181 0 0 chr15 60345712 60346015 -25349739 + AluJo SINE Alu 1 303 -9 270 231 74 83 chr15 60347668 60347789 -25347965 + MLT1K LTR MaLR 211 330 -258 401 259 9 9 chr15 60348549 60348661 -25347093 + MER5B DNA MER1_type 67 178 0 1050 255 148 34 chr15 60348701 60349464 -25346290 + L2 LINE L2 2451 3313 0 2311 119 0 0 chr15 60349491 60349803 -25345951 - AluSx SINE Alu 0 312 1 498 229 38 0 chr15 60350390 60350495 -25345259 + MER81 DNA DNA 2 110 -4 1859 164 0 7 chr15 60350717 60351010 -25344744 + AluJb SINE Alu 3 293 -19 589 289 92 61 chr15 60351728 60351943 -25343811 - L1ME4a LINE L1 -198 5923 5716 2126 126 17 0 chr15 60351943 60352237 -25343517 - AluSx SINE Alu -13 299 1 589 289 92 61 chr15 60352237 60352529 -25343225 - L1ME4a LINE L1 -405 5716 5400 35 95 0 0 chr15 60352838 60352943 -25342811 + AT_rich Low_complexity Low_complexity 1 105 0 2051 99 29 0 chr15 60353081 60353382 -25342372 - AluSx SINE Alu 0 309 1 300 284 71 24 chr15 60353570 60353697 -25342057 - L1ME3A LINE L1 -285 5885 5753 1348 0 34 0 chr15 60353719 60353986 -25341768 + (TTTTA)n Simple_repeat Simple_repeat 1 276 0 1925 150 0 0 chr15 60353988 60354268 -25341486 - AluSx SINE Alu -32 280 1 968 268 97 7 chr15 60354353 60354652 -25341102 - LTR16A LTR ERVL 0 450 125 1051 294 54 23 chr15 60355046 60355494 -25340260 - L2 LINE L2 -7 3306 2820 2176 136 24 32 chr15 60355494 60355870 -25339884 + THE1C LTR MaLR 2 374 -1 1051 294 54 23 chr15 60355870 60356059 -25339695 - L2 LINE L2 -493 2820 2638 458 281 92 17 chr15 60356120 60356358 -25339396 - L2 LINE L2 -1107 2207 1952 2046 134 0 3 chr15 60357635 60357934 -25337820 - L1PA14 LINE L1 0 6161 5864 654 204 23 6 chr15 60358080 60358252 -25337502 + CT-rich Low_complexity Low_complexity 4 178 0 814 163 0 0 chr15 60358270 60358393 -25337361 - AluJb SINE Alu -12 300 178 281 302 95 88 chr15 60358781 60359076 -25336678 - L2 LINE L2 -40 3232 2936 983 45 0 0 chr15 60359210 60359322 -25336432 - AluY SINE Alu -199 112 1 1815 167 10 0 chr15 60359642 60359935 -25335819 + AluJo SINE Alu 7 302 -10 561 331 32 28 chr15 60360045 60360293 -25335461 - MIR SINE MIR 0 262 14 2225 95 3 0 chr15 60360296 60360604 -25335150 + AluSp SINE Alu 1 309 0 180 256 0 0 chr15 60360839 60360878 -25334876 + MIR SINE MIR 110 148 -114 347 310 28 28 chr15 60361285 60361430 -25334324 + MIR3 SINE MIR 16 160 -48 6093 97 1 1 chr15 60361547 60362358 -25333396 - HSMAR2 DNA Mariner -1 1301 491 1382 174 0 0 chr15 60362358 60362565 -25333189 + AluJo SINE Alu 85 291 -21 3183 128 14 2 chr15 60362565 60363059 -25332695 - HSMAR2 DNA Mariner -801 501 2 386 277 143 0 chr15 60364054 60364166 -25331588 + L2 LINE L2 3140 3267 -5 542 191 116 34 chr15 60364742 60364889 -25330865 - MER103 DNA DNA -6 160 2 187 224 41 0 chr15 60364974 60365023 -25330731 - MIR SINE MIR -67 141 91 530 196 9 9 chr15 60366052 60366159 -25329595 + L1M4b LINE L1 1171 1277 -5582 1878 274 86 47 chr15 60366159 60366911 -25328843 - MER21B LTR ERV1 -81 782 1 2256 153 29 3 chr15 60366999 60367379 -25328375 - Tigger1 DNA MER2_type 0 2418 2029 936 131 23 29 chr15 60367381 60367512 -25328242 - MER65A LTR ERV1 0 445 314 2348 73 0 0 chr15 60367512 60367800 -25327954 - AluY SINE Alu -8 303 16 936 131 23 29 chr15 60367800 60367843 -25327911 - MER65A LTR ERV1 -131 314 272 227 333 95 0 chr15 60367949 60368033 -25327721 - MLT1F LTR MaLR -149 393 302 1191 68 0 25 chr15 60368033 60368195 -25327559 + L1P4 LINE L1 5645 5802 -359 1495 52 36 0 chr15 60368348 60368541 -25327213 - L1P4 LINE L1 -535 5626 5427 231 353 60 36 chr15 60368662 60368829 -25326925 - MIR3 SINE MIR -23 185 15 560 110 0 10 chr15 60368829 60368929 -25326825 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 834 191 0 8 chr15 60368932 60369063 -25326691 - FLAM_A SINE Alu -2 131 2 540 325 6 6 chr15 60369284 60369444 -25326310 + MIR3 SINE MIR 15 174 -34 517 230 18 18 chr15 60369486 60369599 -25326155 + MER81 DNA DNA 1 113 -1 1780 225 64 32 chr15 60369634 60370156 -25325598 + MLT1F1 LTR MaLR 1 559 -8 241 258 106 86 chr15 60370241 60370392 -25325362 + MLT1K LTR MaLR 185 338 -250 466 314 22 7 chr15 60370628 60370765 -25324989 - MIR3 SINE MIR -65 143 5 322 289 18 90 chr15 60371092 60371258 -25324496 - MLT1J2 LTR MaLR -50 400 247 358 343 73 7 chr15 60371451 60371588 -25324166 + MER91A DNA MER1_type 25 170 -26 275 73 0 0 chr15 60371647 60371688 -25324066 + Alu SINE Alu 257 297 -2 234 338 0 0 chr15 60371926 60372000 -25323754 - MIR3 SINE MIR -11 197 124 208 237 0 0 chr15 60372016 60372054 -25323700 + (TTG)n Simple_repeat Simple_repeat 2 39 0 885 302 66 58 chr15 60372220 60372873 -25322881 - L1MEd LINE L1 -4889 1230 573 1817 136 56 7 chr15 60372875 60373162 -25322592 + AluSx SINE Alu 1 301 -11 7048 49 0 1 chr15 60373217 60374078 -25321676 - L1PA5 LINE L1 -1060 5086 4227 7735 48 0 9 chr15 60374078 60375157 -25320597 + L1PA5 LINE L1 5084 6154 0 536 79 308 26 chr15 60375159 60375276 -25320478 + L1PA16 LINE L1 6016 6166 0 2082 118 3 10 chr15 60375305 60375602 -25320152 + AluSx SINE Alu 3 297 -15 300 243 28 104 chr15 60375606 60375750 -25320004 - L1MEd LINE L1 -5569 550 418 823 172 0 0 chr15 60376066 60376182 -25319572 + FLAM_C SINE Alu 3 118 -15 366 143 0 0 chr15 60376186 60376249 -25319505 + (CA)n Simple_repeat Simple_repeat 2 64 0 1378 233 87 53 chr15 60377244 60377717 -25318037 - LTR16C LTR ERVL 0 491 3 1734 144 30 36 chr15 60378348 60378653 -25317101 - AluJb SINE Alu -9 303 1 896 147 0 29 chr15 60378810 60378946 -25316808 + FLAM_C SINE Alu 1 132 -1 183 100 0 0 chr15 60378968 60378998 -25316756 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 281 336 76 0 chr15 60379289 60379408 -25316346 - L2 LINE L2 -4 3268 3141 240 296 9 74 chr15 60379422 60379530 -25316224 + MIR SINE MIR 18 118 -90 1957 108 91 3 chr15 60380402 60380689 -25315065 + AluSq SINE Alu 1 312 -1 1005 271 42 8 chr15 60381452 60381714 -25314040 + MER69 DNA AcHobo 18 288 -938 1175 141 55 50 chr15 60381819 60382039 -25313715 - MER65A LTR ERV1 -224 221 1 1329 238 91 34 chr15 60382039 60382455 -25313299 - MER65A-int LTR ERV1 0 4871 4432 1168 196 11 38 chr15 60382455 60382720 -25313034 - AluJb SINE Alu -10 302 45 770 208 83 16 chr15 60382721 60382913 -25312841 - MER65A-int LTR ERV1 -430 4441 4237 25 0 0 0 chr15 60383050 60383075 -25312679 + AT_rich Low_complexity Low_complexity 1 25 0 2251 96 0 10 chr15 60383082 60383373 -25312381 - AluSx SINE Alu -24 288 1 1481 249 62 30 chr15 60383374 60383744 -25312010 - MER65A-int LTR ERV1 -884 3987 3606 250 288 0 50 chr15 60383832 60383912 -25311842 - MER65A-int LTR ERV1 -729 5534 5459 463 154 0 13 chr15 60383914 60383992 -25311762 - MER65A-int LTR ERV1 -1137 3799 3723 180 0 0 0 chr15 60384320 60384340 -25311414 + (T)n Simple_repeat Simple_repeat 1 20 0 444 228 0 67 chr15 60384465 60384658 -25311096 + CT-rich Low_complexity Low_complexity 1 180 0 1236 257 125 42 chr15 60385533 60386206 -25309548 - MER65A-int LTR ERV1 -1299 5032 4304 500 218 76 119 chr15 60386216 60386560 -25309194 - MER65A-int LTR ERV1 -1632 4966 2729 684 179 89 16 chr15 60386568 60386691 -25309063 + FLAM_C SINE Alu 8 139 -4 988 187 26 26 chr15 60386752 60386982 -25308772 - MER65A-int LTR ERV1 -2584 4014 3785 682 164 25 57 chr15 60387098 60387257 -25308497 - MER65A-int LTR ERV1 -2869 3729 3576 695 219 0 0 chr15 60387263 60387382 -25308372 + FLAM_C SINE Alu 2 120 -23 291 133 0 0 chr15 60387391 60387436 -25308318 - MER65A-int LTR ERV1 -3014 3584 3540 1403 169 73 102 chr15 60387708 60388258 -25307496 - MER65A-int LTR ERV1 -3118 3480 2947 901 176 0 60 chr15 60388269 60388485 -25307269 - MER65A-int LTR ERV1 -6371 1749 1547 12781 148 20 4 chr15 60388486 60389255 -25306499 - L1PA12 LINE L1 0 6168 5413 2223 134 0 0 chr15 60389255 60389568 -25306186 - AluSq SINE Alu 0 313 1 12781 148 20 4 chr15 60389568 60391656 -25304098 - L1PA12 LINE L1 -755 5413 3282 7747 189 82 81 chr15 60391765 60392637 -25303117 - MER65A-int LTR ERV1 -2358 2513 1644 2249 117 3 0 chr15 60392637 60392945 -25302809 - AluSx SINE Alu -3 309 1 7747 189 82 81 chr15 60392945 60394498 -25301256 - MER65A-int LTR ERV1 -3227 1644 85 2767 131 37 16 chr15 60394583 60395019 -25300735 - MER65A LTR ERV1 0 445 1 3623 113 12 36 chr15 60395019 60395596 -25300158 - Tigger1 DNA MER2_type -388 2030 1468 867 159 106 0 chr15 60395596 60395747 -25300007 + AluSg/x SINE Alu 133 299 -13 7886 107 50 126 chr15 60395747 60396070 -25299684 - Tigger1 DNA MER2_type -945 1473 1127 2276 123 48 28 chr15 60396070 60396427 -25299327 - THE1B LTR MaLR 0 364 1 7886 107 50 126 chr15 60396427 60397207 -25298547 - Tigger1 DNA MER2_type -1291 1127 527 2292 93 0 0 chr15 60397207 60397498 -25298256 + AluY SINE Alu 13 303 -8 7886 107 50 126 chr15 60397498 60397988 -25297766 - Tigger1 DNA MER2_type -1891 527 1 2509 232 42 49 chr15 60397988 60398771 -25296983 + L1M4 LINE L1 1035 1833 -4813 1997 155 0 0 chr15 60398771 60399067 -25296687 + AluSx SINE Alu 1 296 -16 2509 232 42 49 chr15 60399067 60399308 -25296446 + L1M4 LINE L1 1833 2074 -4572 244 318 68 15 chr15 60399573 60399705 -25296049 + MIR SINE MIR 29 167 -95 447 19 0 0 chr15 60399953 60400005 -25295749 + (TA)n Simple_repeat Simple_repeat 2 53 0 927 93 8 23 chr15 60400005 60400134 -25295620 - FLAM_C SINE Alu -6 127 1 240 86 0 0 chr15 60400455 60400490 -25295264 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 288 0 0 0 chr15 60400671 60400703 -25295051 + (CTG)n Simple_repeat Simple_repeat 1 32 0 3913 31 0 2 chr15 60402141 60402597 -25293157 - L1PA4 LINE L1 0 6155 5701 1493 29 0 0 chr15 60402597 60402767 -25292987 + L1PA4 LINE L1 5539 5708 -447 214 195 0 0 chr15 60402965 60403006 -25292748 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1831 138 0 4 chr15 60404089 60404350 -25291404 + AluSq SINE Alu 1 260 -53 719 236 11 17 chr15 60405516 60405694 -25290060 - MIR SINE MIR -25 237 61 271 178 33 194 chr15 60405704 60405797 -25289957 - MER104 DNA Tc2 -1719 179 127 1665 176 26 10 chr15 60405797 60406103 -25289651 + AluJb SINE Alu 2 312 0 271 178 33 194 chr15 60406103 60406189 -25289565 - MER104 DNA Tc2 -1771 127 29 565 313 32 59 chr15 60406345 60406777 -25288977 - L1ME LINE L1 -304 5817 5407 284 227 15 15 chr15 60406790 60406856 -25288898 + CT-rich Low_complexity Low_complexity 1 66 0 579 279 81 100 chr15 60407075 60407328 -25288426 - L1ME LINE L1 -1102 5044 4788 2065 144 10 3 chr15 60407328 60407511 -25288243 - AluJb SINE Alu -5 307 120 239 0 32 0 chr15 60407511 60407542 -25288212 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2065 144 10 3 chr15 60407542 60407663 -25288091 - AluJb SINE Alu -192 120 1 579 279 81 100 chr15 60407663 60408406 -25287348 - L1ME LINE L1 -1358 4788 4067 2262 30 8 0 chr15 60408511 60408777 -25286977 + L1PA4 LINE L1 5768 6035 -120 372 298 25 0 chr15 60408974 60409095 -25286659 + L2 LINE L2 3147 3270 -2 2133 122 3 0 chr15 60410140 60410435 -25285319 - AluSx SINE Alu -16 296 1 237 172 0 17 chr15 60410716 60410774 -25284980 + T-rich Low_complexity Low_complexity 4 60 0 2065 148 0 3 chr15 60411631 60411936 -25283818 - AluJb SINE Alu -8 304 1 25 0 0 0 chr15 60413678 60413703 -25282051 + AT_rich Low_complexity Low_complexity 1 25 0 2820 69 12 30 chr15 60413716 60413769 -25281985 - L1MA1 LINE L1 0 6302 6250 2045 133 23 0 chr15 60413769 60414069 -25281685 - AluSp SINE Alu -6 307 1 2820 69 12 30 chr15 60414069 60414421 -25281333 - L1MA1 LINE L1 -52 6250 5904 212 207 0 52 chr15 60414421 60414469 -25281285 - MER5B DNA MER1_type -131 47 1 424 246 26 9 chr15 60414594 60414708 -25281046 - HsTC2 DNA Tc2 -619 1279 1164 778 163 42 179 chr15 60414711 60415100 -25280654 - MER51A LTR ERV1 -4 636 288 882 64 48 16 chr15 60415174 60415299 -25280455 - HERVL LTR ERVL -1380 4274 4146 656 135 0 10 chr15 60415475 60415571 -25280183 - AluSg SINE Alu -194 116 22 661 197 131 0 chr15 60415571 60415708 -25280046 - FRAM SINE Alu -10 166 12 387 227 129 92 chr15 60416513 60416809 -25278945 - LTR28 LTR ERV1 -286 139 11 326 310 35 9 chr15 60416900 60417016 -25278738 + LTR28 LTR ERV1 854 972 -48 * 634 236 90 7 chr15 60417013 60417157 -25278597 + LTR28 LTR ERV1 865 1020 0 12433 22 4 0 chr15 60417695 60419420 -25276334 + L1P2 LINE L1 3962 5690 -465 24 0 0 0 chr15 60420382 60420406 -25275348 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 60420441 60420463 -25275291 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr15 60420537 60420572 -25275182 + AT_rich Low_complexity Low_complexity 1 35 0 1837 168 0 3 chr15 60420572 60420881 -25274873 - AluJb SINE Alu 0 308 1 594 100 0 0 chr15 60421475 60421555 -25274199 + AluSg/x SINE Alu 216 295 -14 343 296 71 22 chr15 60421983 60422250 -25273504 + L1M4 LINE L1 2214 2493 -3653 1613 166 108 0 chr15 60422391 60422686 -25273068 - MER7A DNA MER2_type 0 346 22 303 281 49 92 chr15 60422727 60423097 -25272657 + L1M4 LINE L1 2663 3016 -3130 291 54 0 0 chr15 60423097 60423134 -25272620 + (ATG)n Simple_repeat Simple_repeat 3 39 0 2258 82 0 17 chr15 60423185 60423476 -25272278 + AluY SINE Alu 1 286 -25 194 330 46 18 chr15 60423514 60423623 -25272131 - MIR SINE MIR -50 212 101 5158 128 8 4 chr15 60423635 60424618 -25271136 - L1PA16 LINE L1 -9 6157 5144 1294 139 0 16 chr15 60424618 60424805 -25270949 - AluSq SINE Alu -71 242 59 5409 205 25 3 chr15 60425731 60426894 -25268860 - L1 LINE L1 -1008 5138 3951 207 0 0 0 chr15 60426902 60426925 -25268829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1490 163 14 69 chr15 60426929 60427089 -25268665 - AluJo SINE Alu -31 281 143 2229 125 3 3 chr15 60427089 60427402 -25268352 - AluSq SINE Alu 0 313 1 1490 163 14 69 chr15 60427402 60427530 -25268224 - AluJo SINE Alu -169 143 9 1385 219 18 0 chr15 60428072 60428346 -25267408 - AluJo SINE Alu -33 279 1 463 246 8 8 chr15 60428347 60428469 -25267285 + L1ME2 LINE L1 6033 6154 -10 739 168 0 44 chr15 60428704 60428841 -25266913 + AluJ SINE Alu 2 132 -170 213 159 0 0 chr15 60428852 60428896 -25266858 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 273 272 48 0 chr15 60428896 60428999 -25266755 + L1MC4 LINE L1 7924 8031 -11 293 169 15 15 chr15 60429016 60429081 -25266673 + L1ME LINE L1 5721 5785 -336 265 275 143 69 chr15 60429231 60429420 -25266334 + MIR SINE MIR 9 211 -51 233 226 48 0 chr15 60429875 60429937 -25265817 + MER58 DNA MER1_type 2356 2420 0 276 333 5 50 chr15 60430180 60430402 -25265352 + MLT1J2 LTR MaLR 72 320 -130 1439 230 147 75 chr15 60430474 60431352 -25264402 + LTR1B LTR ERV1 1 1015 -5 257 265 0 24 chr15 60431385 60431468 -25264286 - L1ME LINE L1 -252 5869 5789 967 189 0 0 chr15 60431584 60431753 -25264001 + AluJ SINE Alu 132 300 -12 375 300 17 0 chr15 60431753 60431873 -25263881 + L1ME LINE L1 5666 5787 -334 402 343 19 5 chr15 60432742 60432949 -25262805 + L2 LINE L2 2201 2410 -904 219 269 15 45 chr15 60433006 60433073 -25262681 - L2 LINE L2 -20 3252 3188 1896 157 2 68 chr15 60433204 60433450 -25262304 - L1PA15-16 LINE L1 -3897 2952 2740 197 33 33 0 chr15 60433450 60433480 -25262274 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1896 157 2 68 chr15 60433480 60433628 -25262126 - L1PA15-16 LINE L1 -4109 2740 2584 4447 239 12 10 chr15 60433634 60434944 -25260810 - L1PA12 LINE L1 -4082 3502 2182 339 300 0 10 chr15 60435177 60435277 -25260477 - L1PA12 LINE L1 -5399 2182 2084 996 320 27 27 chr15 60435424 60436020 -25259734 - L1PA12 LINE L1 -6200 1374 1 261 0 0 0 chr15 60436076 60436105 -25259649 + (CAG)n Simple_repeat Simple_repeat 2 30 0 465 315 108 45 chr15 60436405 60437890 -25257864 + L1M4 LINE L1 3030 4607 -1539 389 278 24 18 chr15 60438180 60438349 -25257405 - L1MC4a LINE L1 -1923 5885 5716 1637 156 10 68 chr15 60439628 60439936 -25255818 - AluJb SINE Alu -18 294 5 237 254 0 0 chr15 60440229 60440284 -25255470 + L2 LINE L2 3213 3267 -5 384 300 54 0 chr15 60441875 60442005 -25253749 - MLT1K LTR MaLR -55 533 397 392 202 118 17 chr15 60442020 60442139 -25253615 - MLT1K LTR MaLR -162 426 296 357 75 0 0 chr15 60442217 60442270 -25253484 + (CA)n Simple_repeat Simple_repeat 2 54 0 258 236 14 28 chr15 60442980 60443052 -25252702 + MIR3 SINE MIR 90 160 -48 1287 246 129 14 chr15 60445154 60445903 -25249851 - L2 LINE L2 -69 3244 2418 2095 122 17 10 chr15 60446294 60446590 -25249164 - AluSx SINE Alu -14 298 1 730 233 36 87 chr15 60446745 60447020 -25248734 + MIR SINE MIR 2 262 0 198 200 22 0 chr15 60447069 60447114 -25248640 - L2 LINE L2 -8 3264 3219 592 140 0 30 chr15 60448997 60449097 -25246657 + AluJ/FLAM SINE Alu 3 99 -213 211 62 0 83 chr15 60449100 60449148 -25246606 + (CATAA)n Simple_repeat Simple_repeat 4 47 0 201 196 0 0 chr15 60449187 60449243 -25246511 + GA-rich Low_complexity Low_complexity 5 60 0 564 15 0 0 chr15 60449262 60449327 -25246427 + (TC)n Simple_repeat Simple_repeat 2 66 0 1741 180 3 3 chr15 60449327 60449610 -25246144 - AluJb SINE Alu -29 283 1 975 264 43 14 chr15 60449611 60449979 -25245775 - L1M4 LINE L1 -1069 5077 4699 228 67 0 0 chr15 60449983 60450013 -25245741 + (T)n Simple_repeat Simple_repeat 1 30 0 277 185 108 15 chr15 60450995 60451060 -25244694 + MER5B DNA MER1_type 7 77 -101 1996 135 0 3 chr15 60451172 60451495 -25244259 + AluSx SINE Alu 3 324 0 1137 145 12 0 chr15 60451495 60451667 -25244087 + AluJb SINE Alu 134 307 -5 633 215 32 19 chr15 60452198 60452356 -25243398 + MIR SINE MIR 102 261 -1 2721 174 45 16 chr15 60452557 60453116 -25242638 - MER90 LTR ERV1 0 575 1 241 209 173 9 chr15 60453161 60453271 -25242483 - L1ME4a LINE L1 -2 6119 5992 397 158 0 0 chr15 60453477 60453534 -25242220 - MER7A DNA MER2_type 0 337 281 2076 117 19 138 chr15 60453574 60453690 -25242064 + MER4A LTR ERV1 1 129 -535 468 0 0 0 chr15 60453690 60453742 -25242012 + (TA)n Simple_repeat Simple_repeat 2 53 0 2076 117 19 138 chr15 60453742 60454105 -25241649 + MER4A LTR ERV1 129 423 -241 594 230 31 42 chr15 60454136 60454327 -25241427 + MER4C LTR ERV1 277 465 0 * 1362 145 112 4 chr15 60454327 60454575 -25241179 - MER7A DNA MER2_type -73 273 1 458 217 38 0 chr15 60456271 60456377 -25239377 - MER5B DNA MER1_type 0 178 69 1126 161 0 14 chr15 60456479 60456690 -25239064 + AluSg/x SINE Alu 103 310 0 241 321 74 21 chr15 60456845 60457035 -25238719 + L2 LINE L2 2892 3091 -181 1392 182 26 4 chr15 60457276 60457540 -25238214 - AluJb SINE Alu -1 311 42 335 243 0 0 chr15 60459392 60459466 -25236288 + MIR SINE MIR 183 256 -6 603 229 4 8 chr15 60459467 60459721 -25236033 + (CCA)n Simple_repeat Simple_repeat 1 252 0 2258 16 0 0 chr15 60461051 60461307 -25234447 - AluYb8 SINE Alu -3 315 60 569 198 36 0 chr15 60461990 60462101 -25233653 - L2 LINE L2 -6 3307 3193 238 67 44 0 chr15 60462188 60462233 -25233521 + (TA)n Simple_repeat Simple_repeat 1 47 0 843 167 0 0 chr15 60462236 60462362 -25233392 - FLAM_C SINE Alu -7 126 1 1374 165 85 22 chr15 60463428 60463700 -25232054 - MLT1D LTR MaLR -35 470 182 728 225 8 85 chr15 60463887 60463911 -25231843 - MLT1D LTR MaLR -287 218 194 2231 100 0 0 chr15 60463911 60464211 -25231543 - AluSq SINE Alu -8 305 6 728 225 8 85 chr15 60464211 60464422 -25231332 - MLT1D LTR MaLR -311 194 1 1224 167 0 14 chr15 60464782 60464992 -25230762 - AluSg/x SINE Alu 0 312 106 279 286 0 13 chr15 60466297 60466374 -25229380 + (TG)n Simple_repeat Simple_repeat 1 76 0 357 376 56 0 chr15 60467023 60467220 -25228534 + MIR SINE MIR 2 209 -53 609 249 38 25 chr15 60467566 60467904 -25227850 - LTR16A LTR ERVL -7 443 54 411 243 8 63 chr15 60468045 60468174 -25227580 + MIR3 SINE MIR 73 194 -14 1257 172 9 0 chr15 60468635 60468862 -25226892 - AluJo SINE Alu 0 312 84 332 247 21 32 chr15 60468884 60468977 -25226777 - L2 LINE L2 0 3313 3222 180 152 0 0 chr15 60469498 60469531 -25226223 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 189 234 247 0 chr15 60469538 60469615 -25226139 - MIR SINE MIR -67 141 46 787 169 49 0 chr15 60469668 60469810 -25225944 - MER20 DNA MER1_type -42 177 29 213 175 0 0 chr15 60469898 60469938 -25225816 + CT-rich Low_complexity Low_complexity 1 40 0 235 225 256 31 chr15 60470752 60470881 -25224873 - L2 LINE L2 -186 3086 2929 228 307 68 0 chr15 60471254 60471342 -25224412 - L2 LINE L2 -535 2779 2686 249 333 120 0 chr15 60472035 60472143 -25223611 - L2 LINE L2 -8 3264 3144 1223 179 18 9 chr15 60472582 60472811 -25222943 + AluJo SINE Alu 74 304 -8 292 224 72 32 chr15 60472956 60473140 -25222614 + L1MA9 LINE L1 5265 5471 -712 364 240 112 8 chr15 60473141 60473266 -25222488 - MIR3 SINE MIR -5 203 66 220 227 210 25 chr15 60473772 60473891 -25221863 + MIR SINE MIR 49 189 -73 444 325 52 19 chr15 60473927 60474139 -25221615 + MIR SINE MIR 11 229 -33 216 326 42 76 chr15 60474193 60474337 -25221417 + L2 LINE L2 3098 3236 -36 279 278 69 0 chr15 60474360 60474432 -25221322 - MIR SINE MIR -59 149 73 270 297 40 0 chr15 60474450 60474524 -25221230 + L2 LINE L2 3102 3178 -94 906 223 25 20 chr15 60474570 60474767 -25220987 - MIR SINE MIR -4 258 61 1195 171 57 0 chr15 60475173 60475401 -25220353 + L1MA9 LINE L1 5836 6076 -236 918 224 83 18 chr15 60475561 60475789 -25219965 + MIR SINE MIR 16 258 -4 298 174 58 0 chr15 60475854 60475923 -25219831 + L1MA9 LINE L1 6218 6290 -22 775 30 61 0 chr15 60475925 60476024 -25219730 - AluY SINE Alu -10 301 197 7176 113 185 68 chr15 60476024 60477543 -25218211 + pTR5 LTR ERV1 743 2438 0 1411 84 0 61 chr15 60477546 60477759 -25217995 - AluY SINE Alu -111 200 1 860 275 97 7 chr15 60478784 60479082 -25216672 - LTR16C LTR ERVL -96 395 71 306 298 6 30 chr15 60479179 60479347 -25216407 + CT-rich Low_complexity Low_complexity 2 165 0 183 80 0 0 chr15 60480026 60480051 -25215703 + (TC)n Simple_repeat Simple_repeat 2 26 0 985 175 3 140 chr15 60480344 60480474 -25215280 - AluJo SINE Alu -60 252 182 2060 132 0 0 chr15 60480474 60480777 -25214977 - AluSx SINE Alu -9 303 1 985 175 3 140 chr15 60480777 60480938 -25214816 - AluJo SINE Alu -130 182 1 314 377 24 6 chr15 60480964 60481131 -25214623 - L2 LINE L2 -213 3059 2890 252 294 92 84 chr15 60481788 60481988 -25213766 + MIR SINE MIR 20 224 -38 2810 132 32 5 chr15 60481988 60482428 -25213326 - LTR47A LTR ERVL 0 452 1 252 294 92 84 chr15 60482428 60482465 -25213289 + MIR SINE MIR 224 259 -3 958 321 53 41 chr15 60482805 60483329 -25212425 - L2 LINE L2 0 3313 2797 1687 186 9 15 chr15 60483329 60483668 -25212086 + L1MC2 LINE L1 6008 6344 0 1732 157 3 26 chr15 60483671 60483984 -25211770 + AluJo SINE Alu 1 306 -6 958 321 53 41 chr15 60483984 60484284 -25211470 - L2 LINE L2 -517 2796 2458 639 284 65 30 chr15 60484283 60484515 -25211239 - MIR SINE MIR 0 262 23 * 379 241 25 147 chr15 60484530 60484816 -25210938 - L2 LINE L2 -854 2460 2210 228 312 147 32 chr15 60485034 60485191 -25210563 + MIR3 SINE MIR 21 195 -13 293 294 59 25 chr15 60485480 60485599 -25210155 - MIR SINE MIR -80 182 60 131 59 0 0 chr15 60485737 60485959 -25209795 + AT_rich Low_complexity Low_complexity 1 222 0 207 211 211 0 chr15 60485986 60486043 -25209711 - MER5A DNA MER1_type -3 186 118 598 219 158 0 chr15 60487343 60487489 -25208265 - MER5A DNA MER1_type -4 185 17 240 225 169 14 chr15 60487567 60487638 -25208116 + MIR SINE MIR 20 101 -161 25 0 0 0 chr15 60487754 60487779 -25207975 + AT_rich Low_complexity Low_complexity 1 25 0 626 197 0 17 chr15 60487779 60487896 -25207858 - FLAM_A SINE Alu -18 115 1 192 220 20 0 chr15 60487916 60487966 -25207788 + L2 LINE L2 3210 3260 -12 201 139 0 0 chr15 60489055 60489098 -25206656 + (T)n Simple_repeat Simple_repeat 1 43 0 300 291 201 15 chr15 60489560 60489759 -25205995 - MIR SINE MIR -8 254 19 2217 92 0 0 chr15 60490091 60490384 -25205370 + AluSx SINE Alu 1 293 -19 279 0 0 0 chr15 60490384 60490415 -25205339 + (TA)n Simple_repeat Simple_repeat 2 32 0 3613 123 2 2 chr15 60590421 60590982 -25104772 - L1P3 LINE L1 -4764 1697 1137 649 105 0 0 chr15 60590981 60591067 -25104687 - L1P3 LINE L1 -6366 95 10 * 377 322 58 9 chr15 60591434 60591782 -25103972 + L1M4 LINE L1 2132 2496 -3650 22 0 0 0 chr15 60591864 60591886 -25103868 + AT_rich Low_complexity Low_complexity 1 22 0 687 272 24 58 chr15 60592022 60592437 -25103317 + L1M4 LINE L1 4016 4416 -1730 5395 81 16 34 chr15 60592732 60593519 -25102235 + L1PA10 LINE L1 5394 6166 -2 207 0 0 0 chr15 60593538 60593561 -25102193 + (TAA)n Simple_repeat Simple_repeat 2 24 0 425 237 30 22 chr15 60594534 60594669 -25101085 - HAL1b LINE L1 -405 943 808 384 289 145 13 chr15 60596086 60596245 -25099509 - MIR SINE MIR -71 191 12 22 0 0 0 chr15 60597408 60597430 -25098324 + AT_rich Low_complexity Low_complexity 1 22 0 29554 76 5 0 chr15 60597873 60602622 -25093132 + L1PA6 LINE L1 1384 6153 -1 685 297 16 4 chr15 60602795 60603044 -25092710 - HAL1 LINE L1 -865 1642 1391 778 228 56 50 chr15 60603152 60603512 -25092242 - L1MC5 LINE L1 -45 7916 7555 247 355 56 20 chr15 60603994 60604245 -25091509 + L1ME4a LINE L1 5403 5662 -459 261 146 0 0 chr15 60604249 60604297 -25091457 + (CA)n Simple_repeat Simple_repeat 1 48 0 374 293 48 18 chr15 60604563 60604730 -25091024 + L1ME4a LINE L1 5941 6112 -9 650 261 155 23 chr15 60604769 60605033 -25090721 - L3 LINE CR1 -83 1494 1196 27 62 0 0 chr15 60605568 60605616 -25090138 + AT_rich Low_complexity Low_complexity 1 48 0 1834 98 7 7 chr15 60605781 60606055 -25089699 + LTR12 LTR ERV1 1 274 -440 248 263 30 20 chr15 60606060 60606159 -25089595 + LTR30 LTR ERV1 544 643 -79 524 168 21 0 chr15 60606161 60606256 -25089498 + LTR12 LTR ERV1 615 711 -3 2067 112 13 39 chr15 60606360 60606665 -25089089 + AluY SINE Alu 1 297 -14 1752 211 15 20 chr15 60606691 60607099 -25088655 - MLT2D LTR ERVL -8 406 1 370 304 127 6 chr15 60607107 60607265 -25088489 + L1ME4a LINE L1 5729 5905 -216 22 0 0 0 chr15 60607373 60607395 -25088359 + AT_rich Low_complexity Low_complexity 1 22 0 1959 162 8 30 chr15 60607938 60608308 -25087446 + MLT1A1 LTR MaLR 4 365 0 188 0 37 156 chr15 60608628 60608737 -25087017 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 295 339 8 8 chr15 60608741 60608862 -25086892 - LTR33 LTR ERVL -362 159 39 2229 98 3 7 chr15 60609938 60610234 -25085520 + AluSq SINE Alu 1 295 -18 201 158 0 26 chr15 60610598 60610610 -25085144 + CT-rich Low_complexity Low_complexity 2 13 -25 2018 153 0 7 chr15 60610610 60610918 -25084836 - AluJb SINE Alu -6 306 1 201 158 0 26 chr15 60610918 60610943 -25084811 + CT-rich Low_complexity Low_complexity 13 38 0 216 0 0 0 chr15 60611624 60611648 -25084106 + (T)n Simple_repeat Simple_repeat 1 24 0 1894 125 0 30 chr15 60612515 60612812 -25082942 - AluSq SINE Alu -8 305 18 5811 180 14 3 chr15 60612844 60614373 -25081381 - L1MC1 LINE L1 0 6333 4789 28 29 0 0 chr15 60615358 60615393 -25080361 + AT_rich Low_complexity Low_complexity 1 35 0 379 293 57 74 chr15 60615582 60616268 -25079486 + L1MEd LINE L1 878 1551 -4865 2349 123 0 0 chr15 60616285 60616595 -25079159 + AluSg SINE Alu 1 310 0 393 264 55 33 chr15 60616679 60616861 -25078893 + L1MEd LINE L1 1723 1908 -4699 394 326 87 22 chr15 60617095 60617371 -25078383 + L1MEd LINE L1 2123 2416 -4010 2128 270 75 26 chr15 60617474 60618349 -25077405 + MER69 DNA AcHobo 345 1262 -1264 787 233 28 0 chr15 60619311 60619491 -25076263 - MER5A DNA MER1_type -1 188 4 2189 287 155 25 chr15 60619558 60620395 -25075359 + L2 LINE L2 1877 2604 -709 2498 57 0 16 chr15 60620395 60620711 -25075043 - AluY SINE Alu 0 311 1 2189 287 155 25 chr15 60620711 60620751 -25075003 + L2 LINE L2 2604 2637 -676 797 52 15 15 chr15 60620751 60620885 -25074869 + (TC)n Simple_repeat Simple_repeat 1 134 0 2189 287 155 25 chr15 60620885 60621232 -25074522 + L2 LINE L2 2637 3261 -52 282 286 79 8 chr15 60621375 60621501 -25074253 - MIR SINE MIR -56 206 72 356 310 127 39 chr15 60621844 60622309 -25073445 - L1M4 LINE L1 -747 5399 4894 433 346 68 58 chr15 60623541 60623940 -25071814 + L2 LINE L2 2808 3210 -62 336 206 123 0 chr15 60624617 60624690 -25071064 - MER63 DNA MER1_type -2 1059 978 694 153 25 0 chr15 60624695 60624813 -25070941 - MER63 DNA MER1_type -315 747 1 621 324 99 54 chr15 60625779 60626992 -25068762 + L2 LINE L2 2045 3313 0 524 319 16 0 chr15 60627272 60627460 -25068294 - LTR16B LTR ERVL -101 363 173 567 306 59 28 chr15 60627462 60627828 -25067926 - L1M4 LINE L1 -2259 3887 3503 252 0 0 0 chr15 60627828 60627856 -25067898 + (TG)n Simple_repeat Simple_repeat 2 29 0 567 306 59 28 chr15 60627856 60627949 -25067805 - L1M4 LINE L1 -2643 3503 3414 580 283 82 27 chr15 60628004 60628297 -25067457 - L1M4 LINE L1 -2809 3337 3029 297 374 37 0 chr15 60628967 60629181 -25066573 + HERVL LTR ERVL 3093 3314 -2340 813 281 4 19 chr15 60629861 60630124 -25065630 - L1ME1 LINE L1 -5 6161 5903 278 298 12 24 chr15 60633088 60633256 -25062498 - L1M4 LINE L1 -3021 3125 2960 900 177 30 35 chr15 60634077 60634280 -25061474 - MER20 DNA MER1_type 0 219 18 201 233 0 0 chr15 60634525 60634568 -25061186 + CT-rich Low_complexity Low_complexity 1 43 0 7257 47 0 5 chr15 60634769 60635733 -25060021 - L1PA5 LINE L1 -4 6150 5191 694 241 87 10 chr15 60635760 60635955 -25059799 - MER63A DNA MER1_type 0 210 1 319 343 39 22 chr15 60636056 60636234 -25059520 - L1ME1 LINE L1 -297 5824 5644 404 298 102 52 chr15 60636741 60637046 -25058708 + L1M4 LINE L1 4987 5306 -840 361 259 43 17 chr15 60637289 60637405 -25058349 - L1ME1 LINE L1 -1081 5065 4947 2407 119 13 21 chr15 60637932 60638310 -25057444 - THE1C LTR MaLR 0 375 1 1055 215 9 0 chr15 60640315 60640529 -25055225 - MER58A DNA MER1_type 0 224 9 257 282 19 29 chr15 60640930 60641033 -25054721 - MIR SINE MIR -79 183 82 540 191 61 30 chr15 60641041 60641172 -25054582 + MER45A DNA AcHobo 28 162 -16 230 243 14 68 chr15 60641188 60641262 -25054492 - MIR SINE MIR -173 89 20 316 282 51 8 chr15 60641487 60641604 -25054150 - MIR SINE MIR -65 197 76 375 247 67 72 chr15 60642254 60642418 -25053336 + MIR SINE MIR 32 198 -64 368 226 35 9 chr15 60642590 60642705 -25053049 - LTR33 LTR ERVL -8 513 396 715 245 43 29 chr15 60642820 60643027 -25052727 - LTR33 LTR ERVL -339 182 1 188 300 0 29 chr15 60643599 60643669 -25052085 - MIR SINE MIR -82 180 113 572 171 31 12 chr15 60643677 60643887 -25051867 + ORSL DNA AcHobo 33 275 0 482 269 36 12 chr15 60643949 60644116 -25051638 + MER5B DNA MER1_type 5 175 -3 2256 99 3 3 chr15 60644813 60645117 -25050637 + AluSq SINE Alu 1 304 -9 836 268 46 21 chr15 60645404 60645783 -25049971 + L2 LINE L2 2749 3133 -180 470 253 26 77 chr15 60646809 60647003 -25048751 + L2 LINE L2 3130 3313 0 195 100 0 0 chr15 60647326 60647356 -25048398 + (CA)n Simple_repeat Simple_repeat 2 31 0 182 150 25 0 chr15 60647359 60647399 -25048355 + GA-rich Low_complexity Low_complexity 1 41 0 1985 109 53 0 chr15 60647867 60647984 -25047770 + AluY SINE Alu 1 110 -201 189 0 0 0 chr15 60647984 60648005 -25047749 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1985 109 53 0 chr15 60648005 60648171 -25047583 + AluY SINE Alu 110 299 -12 331 231 29 19 chr15 60648491 60648595 -25047159 + MER112 DNA MER1_type 151 255 -5 284 383 28 6 chr15 60648615 60648795 -25046959 - MIR SINE MIR -23 239 56 303 255 49 0 chr15 60648865 60648967 -25046787 + L1ME4a LINE L1 5964 6070 -51 339 316 42 91 chr15 60649432 60649717 -25046037 + L2 LINE L2 3001 3271 -1 1701 163 39 0 chr15 60650379 60650662 -25045092 + AluJb SINE Alu 1 294 -18 569 287 96 5 chr15 60651099 60651287 -25044467 - MER63A DNA MER1_type -2 208 4 408 318 46 29 chr15 60652419 60652658 -25043096 - L1M4 LINE L1 -3019 3127 2885 23 54 0 0 chr15 60652660 60652697 -25043057 + AT_rich Low_complexity Low_complexity 1 37 0 2158 114 10 0 chr15 60652726 60653024 -25042730 - AluSp SINE Alu -12 301 1 504 331 114 45 chr15 60653104 60653524 -25042230 - L2 LINE L2 -7 3265 2817 770 285 113 9 chr15 60654137 60654604 -25041150 + Charlie7 DNA MER1_type 115 630 -1982 205 29 59 0 chr15 60654610 60654644 -25041110 + (TA)n Simple_repeat Simple_repeat 1 36 0 802 162 0 0 chr15 60654754 60654871 -25040883 + AluJ SINE Alu 1 117 -185 251 329 0 0 chr15 60656633 60656715 -25039039 - HERVL LTR ERVL -2376 3278 3197 893 314 6 3 chr15 60656758 60657111 -25038643 - HERVL LTR ERVL -2859 2905 2552 348 284 80 52 chr15 60657159 60657448 -25038306 - LTR50 LTR ERVL 0 795 499 406 268 147 16 chr15 60657584 60657774 -25037980 - LTR50 LTR ERVL -579 216 2 2108 105 0 7 chr15 60659286 60659613 -25036141 - AluSx SINE Alu 0 325 1 463 271 60 84 chr15 60660142 60660511 -25035243 - MLT1K LTR MaLR -69 519 160 1021 193 0 0 chr15 60661636 60661802 -25033952 + AluJ SINE Alu 126 291 -21 355 310 97 61 chr15 60662626 60662987 -25032767 + HAL1b LINE L1 361 734 -614 306 306 106 106 chr15 60664769 60665004 -25030750 - L2 LINE L2 0 3272 3038 523 256 30 24 chr15 60665306 60665470 -25030284 + MER96 DNA MER1_type? 5 169 -6 1690 182 51 19 chr15 60665751 60666125 -25029629 - MLT1B LTR MaLR -4 386 1 3149 91 2 0 chr15 60666745 60667183 -25028571 + L1PA10 LINE L1 5730 6168 0 282 200 0 46 chr15 60667320 60667336 -25028418 + GA-rich Low_complexity Low_complexity 5 20 -46 1745 185 6 13 chr15 60667336 60667649 -25028105 + AluJb SINE Alu 1 311 -1 282 200 0 46 chr15 60667649 60667697 -25028057 + GA-rich Low_complexity Low_complexity 20 66 0 359 281 85 110 chr15 60668740 60669177 -25026577 - L1M4 LINE L1 -3045 3101 2676 198 103 0 0 chr15 60669204 60669233 -25026521 + (TA)n Simple_repeat Simple_repeat 2 30 0 568 208 155 12 chr15 60669348 60669516 -25026238 - L1ME2 LINE L1 0 6164 5973 247 326 0 31 chr15 60670069 60670167 -25025587 + MLT1K LTR MaLR 111 205 -383 3720 141 51 18 chr15 60670207 60670956 -25024798 - LTR1B LTR ERV1 0 826 1 321 291 108 14 chr15 60671028 60671241 -25024513 + MLT1K LTR MaLR 344 576 -12 400 301 0 0 chr15 60671549 60671642 -25024112 + L2 LINE L2 3218 3310 -3 25 51 0 0 chr15 60671664 60671703 -25024051 + AT_rich Low_complexity Low_complexity 1 39 0 2576 190 21 18 chr15 60672137 60672652 -25023102 + LTR31 LTR ERV1 88 604 -15 26 64 0 0 chr15 60673620 60673667 -25022087 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr15 60673694 60673720 -25022034 + AT_rich Low_complexity Low_complexity 1 26 0 701 268 37 0 chr15 60673784 60673974 -25021780 + MIR SINE MIR 65 261 -1 1846 157 13 7 chr15 60674487 60674792 -25020962 - AluJb SINE Alu -5 307 1 2473 244 86 41 chr15 60675260 60676733 -25019021 - L1ME3A LINE L1 0 6170 4616 6339 155 21 4 chr15 60676738 60677875 -25017879 + L1M4 LINE L1 7 1162 -4166 5699 109 58 15 chr15 60677867 60678841 -25016913 + L1MA2 LINE L1 1776 2791 -4774 * 6395 139 30 11 chr15 60678837 60681038 -25014716 + L1MA2 LINE L1 5493 7723 0 2650 225 27 19 chr15 60681031 60681884 -25013870 + L1M4 LINE L1 1340 2199 -4129 * 2976 154 7 28 chr15 60681885 60682352 -25013402 + L1MA4 LINE L1 5729 6183 -117 2324 169 28 12 chr15 60682352 60682777 -25012977 + MSTB1 LTR MaLR 1 432 0 2976 154 7 28 chr15 60682777 60682888 -25012866 + L1MA4 LINE L1 6183 6295 -5 280 208 69 10 chr15 60682895 60682996 -25012758 - L1ME3A LINE L1 -1538 4608 4502 576 287 83 0 chr15 60683053 60683269 -25012485 - L1ME3A LINE L1 -2221 3925 3692 755 309 37 15 chr15 60683429 60683892 -25011862 + L1M4 LINE L1 4135 4607 -1721 943 296 102 8 chr15 60683894 60684681 -25011073 + L1MEc LINE L1 1728 2558 -3657 817 245 42 45 chr15 60684699 60685034 -25010720 + L1ME2 LINE L1 5822 6155 -9 2402 49 0 0 chr15 60685167 60685491 -25010263 - AluY SINE Alu 0 324 1 334 297 36 9 chr15 60685631 60685742 -25010012 - MIR SINE MIR -120 142 29 2473 157 44 4 chr15 60686501 60686980 -25008774 - L1MC3 LINE L1 -88 7697 7200 274 278 0 22 chr15 60686990 60687080 -25008674 - MLT1F1 LTR MaLR -445 122 35 396 209 66 39 chr15 60687086 60687268 -25008486 - L1MC3 LINE L1 -694 7091 6905 465 280 21 48 chr15 60687304 60687490 -25008264 + L2 LINE L2 3098 3278 -35 233 309 6 12 chr15 60688304 60688387 -25007367 - MIR3 SINE MIR -25 183 101 254 376 34 8 chr15 60688388 60688505 -25007249 - MIR SINE MIR -35 227 108 265 240 140 40 chr15 60688547 60688647 -25007107 - MIR3 SINE MIR -92 116 7 2318 99 0 0 chr15 60688663 60688966 -25006788 - AluY SINE Alu -8 303 1 498 61 0 0 chr15 60689682 60689748 -25006006 + (TG)n Simple_repeat Simple_repeat 2 67 0 315 265 143 72 chr15 60690638 60690861 -25004893 + L1ME LINE L1 5393 5631 -490 1988 159 0 0 chr15 60690978 60691279 -25004475 - AluJo SINE Alu -11 301 1 225 196 0 0 chr15 60691670 60691721 -25004033 + (CATA)n Simple_repeat Simple_repeat 2 52 0 297 250 51 51 chr15 60691899 60692055 -25003699 - L1ME4a LINE L1 0 6121 5966 5057 163 19 5 chr15 60692710 60693894 -25001860 + L1MA5 LINE L1 4951 6154 -146 622 114 9 0 chr15 60694038 60694143 -25001611 + L1MA5 LINE L1 6195 6300 0 501 308 105 32 chr15 60694282 60694597 -25001157 - HAL1b LINE L1 -678 670 333 812 244 36 23 chr15 60695158 60695379 -25000375 - MIR SINE MIR -37 225 2 2468 80 0 0 chr15 60695903 60696203 -24999551 - AluSx SINE Alu -12 300 1 2170 120 3 0 chr15 60696576 60696868 -24998886 - AluSq SINE Alu -20 293 1 820 183 0 0 chr15 60696874 60697011 -24998743 - FLAM_C SINE Alu -6 137 1 347 296 63 19 chr15 60697026 60697185 -24998569 - MIR SINE MIR -6 256 91 4503 238 25 30 chr15 60698096 60698703 -24997051 - L1PA13 LINE L1 -3211 3586 2978 2290 124 7 0 chr15 60698703 60699010 -24996744 + AluSx SINE Alu 2 310 -2 4503 238 25 30 chr15 60699010 60701465 -24994289 - L1PA13 LINE L1 -3819 2978 1 23 54 0 0 chr15 60701585 60701622 -24994132 + AT_rich Low_complexity Low_complexity 1 37 0 216 195 0 0 chr15 60701926 60701967 -24993787 + T-rich Low_complexity Low_complexity 2 42 0 647 285 50 57 chr15 60701980 60702419 -24993335 - L1M4 LINE L1 -2207 3939 3504 23 0 0 0 chr15 60702842 60702865 -24992889 + AT_rich Low_complexity Low_complexity 1 23 0 694 189 0 8 chr15 60703027 60703154 -24992600 + FLAM_A SINE Alu 6 131 -11 373 277 217 12 chr15 60703391 60703557 -24992197 - MIR SINE MIR -58 204 5 202 346 10 50 chr15 60703571 60703672 -24992082 - MIR3 SINE MIR -109 99 3 2034 148 0 3 chr15 60703689 60703992 -24991762 + AluSx SINE Alu 1 302 -10 594 227 20 7 chr15 60704099 60704249 -24991505 + MLT1J LTR MaLR 65 216 -295 283 390 66 7 chr15 60704792 60704928 -24990826 - L2 LINE L2 -2 3270 3127 225 254 111 56 chr15 60706228 60706297 -24989457 + MIR3 SINE MIR 43 107 -101 1659 85 8 25 chr15 60706297 60706532 -24989222 - AluSg/x SINE Alu -10 302 72 225 254 111 56 chr15 60706532 60706588 -24989166 + MIR3 SINE MIR 107 175 -33 180 311 0 16 chr15 60707424 60707485 -24988269 - MIR3 SINE MIR -9 199 140 801 296 0 5 chr15 60707518 60707717 -24988037 - MIR SINE MIR -6 256 59 362 298 35 9 chr15 60707906 60708020 -24987734 + MIR SINE MIR 75 191 -71 217 318 167 20 chr15 60708045 60708243 -24987511 - L2 LINE L2 -1218 2096 1870 638 158 16 33 chr15 60708258 60708441 -24987313 + CT-rich Low_complexity Low_complexity 1 180 0 233 304 31 29 chr15 60708531 60708734 -24987020 - L2 LINE L2 -1544 1770 1512 384 255 77 79 chr15 60708956 60709168 -24986586 + MIR SINE MIR 3 212 -50 2578 79 0 6 chr15 60710178 60710533 -24985221 + L1PA13 LINE L1 5809 6161 -2 332 306 13 19 chr15 60711022 60711179 -24984575 - MIR SINE MIR -1 261 106 757 317 89 20 chr15 60711183 60711574 -24984180 + L2 LINE L2 2886 3303 -10 237 241 19 19 chr15 60711573 60711627 -24984127 + L2 LINE L2 3210 3263 -9 * 371 298 94 86 chr15 60711898 60711951 -24983803 - L1MEd LINE L1 -4925 1194 1143 246 62 0 0 chr15 60711951 60711983 -24983771 + (TTG)n Simple_repeat Simple_repeat 2 33 0 371 298 94 86 chr15 60711983 60712174 -24983580 - L1MEd LINE L1 -4976 1143 948 24 53 0 0 chr15 60712939 60712977 -24982777 + AT_rich Low_complexity Low_complexity 1 38 0 843 245 65 10 chr15 60713841 60714041 -24981713 - MIR SINE MIR -49 213 3 237 278 125 36 chr15 60714117 60714365 -24981389 - L1M4 LINE L1 -1926 4220 3951 994 161 6 12 chr15 60714572 60714740 -24981014 + AluJb SINE Alu 87 253 -59 1128 264 41 24 chr15 60714759 60715172 -24980582 - L1ME3A LINE L1 -67 6103 5684 348 237 62 51 chr15 60715205 60715382 -24980372 - L1ME3A LINE L1 -2635 3511 3333 282 299 37 0 chr15 60715625 60715759 -24979995 - L1ME3A LINE L1 -3131 3015 2877 367 265 100 31 chr15 60715785 60716001 -24979753 + MLT1J2 LTR MaLR 39 269 -177 25 0 0 0 chr15 60716177 60716202 -24979552 + AT_rich Low_complexity Low_complexity 1 25 0 712 193 32 0 chr15 60716503 60716752 -24979002 + L1MA9 LINE L1 5938 6290 -22 247 259 187 18 chr15 60716798 60717076 -24978678 - L1ME3A LINE L1 -3648 2498 2174 22 35 0 0 chr15 60717189 60717218 -24978536 + AT_rich Low_complexity Low_complexity 1 29 0 392 37 19 0 chr15 60717218 60717272 -24978482 + (CA)n Simple_repeat Simple_repeat 2 56 0 2425 91 0 0 chr15 60717927 60718235 -24977519 + AluSc SINE Alu 1 308 -1 504 0 0 0 chr15 60718392 60718448 -24977306 + (TA)n Simple_repeat Simple_repeat 1 56 0 2017 64 4 19 chr15 60718460 60718726 -24977028 - AluY SINE Alu -16 295 34 8966 181 66 71 chr15 60718726 60720475 -24975279 - L1MC3 LINE L1 -100 7685 5929 1770 184 16 58 chr15 60720475 60720812 -24974942 + MLT1A1 LTR MaLR 1 322 -43 2132 134 3 0 chr15 60720812 60721110 -24974644 - AluSx SINE Alu -13 299 1 1770 184 16 58 chr15 60721110 60721153 -24974601 + MLT1A1 LTR MaLR 322 365 0 8966 181 66 71 chr15 60721153 60721419 -24974335 - L1MC3 LINE L1 -1856 5929 5663 1907 139 30 7 chr15 60721419 60721722 -24974032 + AluJb SINE Alu 1 310 -2 8966 181 66 71 chr15 60721722 60722249 -24973505 - L1MC3 LINE L1 -2122 5663 5144 384 238 211 9 chr15 60722236 60722459 -24973295 - L1MC3 LINE L1 -1593 4553 4286 * 21 0 0 0 chr15 60723185 60723206 -24972548 + AT_rich Low_complexity Low_complexity 1 21 0 518 293 134 25 chr15 60723373 60723977 -24971777 - L1MC4a LINE L1 -1879 5929 5260 1823 164 0 4 chr15 60724057 60724352 -24971402 - AluJb SINE Alu 0 301 8 236 261 0 0 chr15 60724610 60724656 -24971098 + polypurine Low_complexity Low_complexity 5 50 0 235 285 32 57 chr15 60726105 60726228 -24969526 - MIR SINE MIR -73 189 70 1999 123 0 53 chr15 60726384 60726511 -24969243 + AluSx SINE Alu 1 133 -179 7122 70 7 0 chr15 60726511 60728240 -24967514 + L1PA6 LINE L1 4397 6145 -9 448 56 28 0 chr15 60728246 60728318 -24967436 + (TA)n Simple_repeat Simple_repeat 1 74 0 2586 81 3 3 chr15 60728318 60728675 -24967079 + L1PB1 LINE L1 5794 6150 -1 1999 123 0 53 chr15 60728675 60728840 -24966914 + AluSx SINE Alu 136 285 -27 243 265 84 12 chr15 60729676 60729759 -24965995 - MIR3 SINE MIR -31 177 89 286 22 0 44 chr15 60729924 60729969 -24965785 + (TTA)n Simple_repeat Simple_repeat 3 45 0 738 220 108 50 chr15 60729992 60730233 -24965521 + MER21B LTR ERV1 24 278 -585 2448 77 0 0 chr15 60730860 60731158 -24964596 - AluY SINE Alu -13 298 1 406 294 147 31 chr15 60732148 60732536 -24963218 - L1ME4a LINE L1 -204 5917 5485 914 233 143 62 chr15 60732748 60733215 -24962539 + MLT1D LTR MaLR 1 505 0 470 265 160 6 chr15 60733583 60733764 -24961990 + MER3 DNA MER1_type 1 209 0 388 230 20 50 chr15 60733802 60733902 -24961852 + MIR SINE MIR 2 98 -164 2104 131 51 6 chr15 60734075 60734425 -24961329 - L1PB1 LINE L1 -1 6150 5785 444 139 20 40 chr15 60734425 60734576 -24961178 + (TA)n Simple_repeat Simple_repeat 1 148 0 807 128 7 7 chr15 60734576 60734717 -24961037 - L1PB1 LINE L1 -360 5791 5651 5985 170 16 8 chr15 60734817 60736011 -24959743 - L1PB1 LINE L1 -525 5626 4418 2416 82 23 14 chr15 60736011 60736363 -24959391 + THE1A LTR MaLR 1 355 0 5985 170 16 8 chr15 60736363 60736802 -24958952 - L1PB1 LINE L1 -1733 4418 3984 803 287 121 18 chr15 60737250 60737647 -24958107 - LTR16A1 LTR ERVL -18 439 2 380 297 41 7 chr15 60737900 60738045 -24957709 - MLT1G1 LTR MaLR -2 593 444 301 257 0 0 chr15 60738123 60738197 -24957557 - MLT1G1 LTR MaLR -298 297 224 256 296 30 45 chr15 60738869 60739001 -24956753 - MLT1-int LTR MaLR -505 866 737 268 214 61 0 chr15 60739177 60739275 -24956479 - L1ME LINE L1 -5235 835 732 1253 157 5 0 chr15 60739279 60739470 -24956284 + AluJb SINE Alu 100 291 -21 714 268 131 66 chr15 60739470 60740149 -24955605 - L1ME LINE L1 -5336 734 12 21 0 0 0 chr15 60740261 60740282 -24955472 + AT_rich Low_complexity Low_complexity 1 21 0 261 279 23 23 chr15 60740364 60740450 -24955304 + MIR SINE MIR 58 143 -119 264 59 0 0 chr15 60741965 60741999 -24953755 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 313 15 15 chr15 60742029 60742096 -24953658 + MIR SINE MIR 36 102 -106 249 33 0 0 chr15 60742628 60742658 -24953096 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 376 294 63 16 chr15 60743636 60743762 -24951992 - MER91A DNA MER1_type -30 166 35 905 244 107 7 chr15 60744062 60744370 -24951384 - L1MC4 LINE L1 -888 7154 6816 294 29 0 0 chr15 60744421 60744456 -24951298 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1158 158 74 5 chr15 60745312 60745514 -24950240 + MER20 DNA MER1_type 1 216 -3 21 0 0 0 chr15 60745546 60745567 -24950187 + AT_rich Low_complexity Low_complexity 1 21 0 483 317 81 54 chr15 60745606 60746016 -24949738 - L1M4 LINE L1 -932 5214 4794 304 232 108 16 chr15 60746089 60746283 -24949471 - L1M4 LINE L1 -1536 4610 4399 1732 192 80 70 chr15 60746657 60747267 -24948487 - L1ME2 LINE L1 -1 6163 5548 * 2017 232 74 106 chr15 60747266 60747743 -24948011 - L1MD3 LINE L1 -10 8027 7536 5998 113 31 2 chr15 60747743 60749012 -24946742 - L1PB3 LINE L1 0 6154 4873 2017 232 74 106 chr15 60749012 60749539 -24946215 - L1MD3 LINE L1 -501 7536 7104 408 20 0 0 chr15 60749539 60749588 -24946166 + (TG)n Simple_repeat Simple_repeat 2 50 0 2017 232 74 106 chr15 60749588 60750087 -24945667 - L1MD3 LINE L1 -933 7104 6591 8375 170 49 74 chr15 60750125 60751925 -24943829 + MER52A LTR ERV1 1 1755 0 326 274 91 28 chr15 60751963 60752179 -24943575 - L1ME LINE L1 -5303 1644 1350 476 310 79 60 chr15 60752288 60752768 -24942986 - L1ME LINE L1 -5543 1404 916 601 91 0 11 chr15 60752772 60752860 -24942894 - LTR12 LTR ERV1 -13 701 615 303 202 36 0 chr15 60752863 60752947 -24942807 - LTR30 LTR ERV1 -80 642 556 1388 130 33 49 chr15 60752947 60753308 -24942446 - LTR12 LTR ERV1 -401 2037 1 388 328 105 30 chr15 60753736 60754041 -24941713 - L1M4 LINE L1 -2309 3837 3510 7888 10 0 0 chr15 60754132 60755259 -24940495 - L1PA2 LINE L1 -1 6154 5027 368 336 39 73 chr15 60755287 60755778 -24939976 - L1M4 LINE L1 -2682 3464 2991 210 189 0 19 chr15 60756045 60756098 -24939656 + (TA)n Simple_repeat Simple_repeat 1 52 0 324 253 66 42 chr15 60756101 60756267 -24939487 + L1ME4a LINE L1 5930 6099 -22 645 319 130 11 chr15 60756295 60756750 -24939004 + L1ME4a LINE L1 5599 6107 -14 228 287 110 13 chr15 60757552 60757789 -24937965 + L1ME4a LINE L1 5850 6109 -12 471 277 24 70 chr15 60758219 60758432 -24937322 + MIR SINE MIR 1 203 -59 484 200 0 0 chr15 60758889 60758995 -24936759 - MER5A DNA MER1_type -80 109 4 346 288 86 31 chr15 60759066 60759229 -24936525 + MIR SINE MIR 84 255 -7 360 133 0 0 chr15 60759470 60759530 -24936224 + (T)n Simple_repeat Simple_repeat 1 60 0 219 224 0 0 chr15 60759875 60759924 -24935830 + MIR SINE MIR 149 197 -65 277 241 96 64 chr15 60761427 60761676 -24934078 + L1M4 LINE L1 3183 3439 -2707 453 50 50 0 chr15 60762346 60762426 -24933328 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 282 287 82 27 chr15 60762672 60762874 -24932880 - L1ME LINE L1 -431 5739 5530 * 875 119 9 15 chr15 60762846 60763025 -24932729 + L1P5 LINE L1 5662 5848 -308 277 246 29 51 chr15 60763046 60763184 -24932570 - L1ME LINE L1 -2340 5468 5334 2159 88 3 14 chr15 60763217 60763513 -24932241 - AluSx SINE Alu -19 293 1 349 183 73 12 chr15 60764199 60764281 -24931473 + L1MC4 LINE L1 6605 6691 -1351 239 313 12 0 chr15 60764528 60764608 -24931146 - MIR SINE MIR -56 206 126 467 320 57 0 chr15 60764818 60765012 -24930742 - MIR SINE MIR -43 219 15 619 247 37 0 chr15 60765031 60765193 -24930561 + MER58C DNA MER1_type 48 215 0 191 310 56 0 chr15 60766253 60766324 -24929430 - MIR SINE MIR -91 171 97 216 0 0 0 chr15 60766370 60766394 -24929360 + (A)n Simple_repeat Simple_repeat 1 24 0 1212 164 153 33 chr15 60766394 60766669 -24929085 + AluSg1 SINE Alu 1 308 -1 398 301 138 51 chr15 60766807 60767199 -24928555 - L1ME4a LINE L1 -157 5964 5539 511 325 36 21 chr15 60767336 60767530 -24928224 + MIR SINE MIR 9 205 -57 602 13 0 0 chr15 60767571 60767649 -24928105 - L1PA2 LINE L1 -1 6154 6077 * 40539 35 22 1 chr15 60767639 60773630 -24922124 - L1PA2 LINE L1 -33 6122 1 660 248 102 34 chr15 60773973 60774267 -24921487 + Charlie7 DNA MER1_type 43 356 -2256 239 232 36 18 chr15 60774342 60774454 -24921300 + (TATATG)n Simple_repeat Simple_repeat 3 116 0 205 256 15 44 chr15 60774545 60774682 -24921072 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 452 259 23 84 chr15 60774723 60774986 -24920768 + Charlie7 DNA MER1_type 1536 1782 -830 800 209 105 77 chr15 60774987 60775598 -24920156 + Charlie7 DNA MER1_type 1904 2531 -81 183 205 0 0 chr15 60775665 60775704 -24920050 + (TA)n Simple_repeat Simple_repeat 2 40 0 656 179 83 6 chr15 60776080 60776236 -24919518 + MER63A DNA MER1_type 1 168 -42 965 240 18 0 chr15 60776236 60776453 -24919301 + L1PA12 LINE L1 806 1026 -6555 233 31 0 0 chr15 60776553 60776585 -24919169 - AluY SINE Alu -267 32 1 3121 74 12 0 chr15 60776585 60777002 -24918752 - L1PA13 LINE L1 -5 6158 5737 2183 108 26 0 chr15 60777393 60777698 -24918056 - AluSp SINE Alu 0 313 1 364 239 17 53 chr15 60777728 60777879 -24917875 - MLT1I LTR MaLR -268 141 1 347 212 35 12 chr15 60778488 60778573 -24917181 - L2 LINE L2 -16 3297 3211 693 289 81 8 chr15 60778675 60778910 -24916844 - MIR SINE MIR 0 262 11 444 320 52 0 chr15 60778920 60779114 -24916640 - L2 LINE L2 -1119 2195 1992 1442 135 10 56 chr15 60779355 60779658 -24916096 - L1MB3 LINE L1 -199 5984 5696 29 70 0 0 chr15 60779976 60780033 -24915721 + AT_rich Low_complexity Low_complexity 1 57 0 235 125 25 0 chr15 60780134 60780174 -24915580 + Charlie3 DNA MER1_type 2666 2706 -4 5835 122 7 74 chr15 60780434 60781607 -24914147 - L1PA15 LINE L1 0 6165 5027 1368 186 0 3 chr15 60781607 60781897 -24913857 + L1P LINE L1 4657 4945 -1201 696 263 5 5 chr15 60781999 60782251 -24913503 + AluYb8 SINE Alu 106 357 0 196 375 12 0 chr15 60782416 60782496 -24913258 - L3 LINE CR1 -259 1318 1238 30 45 0 0 chr15 60782600 60782644 -24913110 + AT_rich Low_complexity Low_complexity 1 44 0 307 325 41 6 chr15 60782912 60783081 -24912673 - L1MC/D LINE L1 -1960 5848 5674 1082 249 129 46 chr15 60783817 60784229 -24911525 + L1MC4 LINE L1 7429 7902 -140 279 0 0 0 chr15 60784229 60784260 -24911494 + (TG)n Simple_repeat Simple_repeat 2 32 0 1082 249 129 46 chr15 60784260 60784413 -24911341 + L1MC4 LINE L1 7902 8041 -1 363 151 0 41 chr15 60784718 60784791 -24910963 - MER20 DNA MER1_type 0 219 150 384 171 0 0 chr15 60784800 60784870 -24910884 - MER20 DNA MER1_type 0 219 150 375 186 0 0 chr15 60784879 60784949 -24910805 - MER20 DNA MER1_type 0 219 150 1234 147 23 18 chr15 60784958 60785176 -24910578 - MER20 DNA MER1_type 0 219 1 272 231 26 13 chr15 60786150 60786228 -24909526 - Tigger5 DNA MER2_type -1 2322 2244 * 455 225 0 11 chr15 60786221 60786372 -24909382 - Tigger5 DNA MER2_type -2125 198 1 487 301 98 48 chr15 60786372 60786707 -24909047 - L1ME4a LINE L1 -215 5906 5555 20652 179 22 20 chr15 60786892 60787190 -24908564 + L1P4 LINE L1 647 943 -5220 2053 140 7 0 chr15 60787190 60787482 -24908272 - AluSq SINE Alu -19 294 1 20652 179 22 20 chr15 60787482 60792114 -24903640 + L1P4 LINE L1 943 5586 -577 4275 89 60 0 chr15 60792214 60792829 -24902925 + L1PA13 LINE L1 5497 6148 -15 396 0 0 0 chr15 60792966 60793010 -24902744 + (TC)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr15 60793013 60793034 -24902720 + (CA)n Simple_repeat Simple_repeat 1 21 0 432 350 11 32 chr15 60793070 60793256 -24902498 + MIR SINE MIR 23 204 -58 496 246 58 0 chr15 60794264 60794435 -24901319 - Charlie7 DNA MER1_type -403 2209 2029 219 242 32 0 chr15 60795292 60795354 -24900400 + GA-rich Low_complexity Low_complexity 1 64 0 1178 132 20 0 chr15 60795355 60795552 -24900202 + L1MC1 LINE L1 5433 5633 -700 1672 176 32 6 chr15 60795655 60796001 -24899753 + L1MC1 LINE L1 5862 6216 -117 1508 114 4 0 chr15 60796022 60796259 -24899495 - L1MA2 LINE L1 -3 6301 6064 649 124 26 26 chr15 60796259 60796371 -24899383 + L1MC1 LINE L1 6221 6333 0 1771 155 17 52 chr15 60796791 60797153 -24898601 + MLT1A1 LTR MaLR 5 353 -12 627 309 18 23 chr15 60797759 60797973 -24897781 + LTR33 LTR ERVL 1 213 -308 1051 193 104 30 chr15 60797973 60798430 -24897324 - MER67A LTR ERV1 0 661 2 295 305 68 0 chr15 60798468 60798586 -24897168 + LTR33 LTR ERVL 235 360 -161 590 278 27 39 chr15 60798734 60798993 -24896761 + LTR16C LTR ERVL 71 326 -165 567 177 21 43 chr15 60798996 60799137 -24896617 - MLT1H LTR MaLR -4 545 408 593 254 72 26 chr15 60799201 60799394 -24896360 - MLT1H LTR MaLR -248 301 100 610 310 27 54 chr15 60800487 60800822 -24894932 + MLT1I LTR MaLR 66 391 -18 635 289 139 33 chr15 60800846 60800927 -24894827 + L1M4 LINE L1 2207 2278 -3868 2224 115 0 28 chr15 60800927 60801248 -24894506 + AluSx SINE Alu 1 312 0 635 289 139 33 chr15 60801248 60801706 -24894048 + L1M4 LINE L1 2278 2803 -3343 1998 186 44 12 chr15 60801718 60802131 -24893623 - MSTB1 LTR MaLR 0 432 7 339 256 44 28 chr15 60802151 60802331 -24893423 + L1M4 LINE L1 2839 3021 -3125 294 291 8 0 chr15 60802425 60802552 -24893202 + L1M4 LINE L1 3174 3301 -2845 40103 50 27 2 chr15 60802568 60808569 -24887185 + L1PA2 LINE L1 3 6155 0 2911 46 3 0 chr15 60808579 60808930 -24886824 + L1PA4 LINE L1 5770 6121 -34 246 206 20 98 chr15 60808900 60809002 -24886752 + L1PA3 LINE L1 6060 6153 -2 * 388 320 90 16 chr15 60809517 60809951 -24885803 + L1ME4a LINE L1 5644 6109 -12 488 268 24 70 chr15 60810386 60810599 -24885155 + MIR SINE MIR 1 203 -59 498 228 122 11 chr15 60810978 60811143 -24884611 - MER5A DNA MER1_type 0 189 4 300 296 80 16 chr15 60811211 60811336 -24884418 + MIR SINE MIR 84 216 -46 294 106 0 0 chr15 60811617 60811664 -24884090 + (T)n Simple_repeat Simple_repeat 1 47 0 221 204 0 0 chr15 60812018 60812067 -24883687 + MIR SINE MIR 149 197 -65 341 231 104 80 chr15 60813479 60813816 -24881938 + L1M4 LINE L1 3095 3439 -2707 346 214 134 9 chr15 60814280 60814392 -24881362 + L1ME4a LINE L1 5955 6080 -41 738 17 68 0 chr15 60814484 60814602 -24881152 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 390 307 113 23 chr15 60814794 60815051 -24880703 - L1MC/D LINE L1 -2002 5806 5527 * 920 129 53 18 chr15 60815028 60815199 -24880555 + L1PB3 LINE L1 5668 5844 -310 293 216 60 52 chr15 60815224 60815358 -24880396 - L1MC/D LINE L1 -2340 5468 5334 1201 211 134 0 chr15 60815361 60815636 -24880118 - SATR1 Satellite Satellite -145 325 14 22 0 0 0 chr15 60815712 60815734 -24880020 + AT_rich Low_complexity Low_complexity 1 22 0 390 244 6 31 chr15 60815776 60815936 -24879818 + (TTA)n Simple_repeat Simple_repeat 1 156 0 2622 150 100 8 chr15 60815941 60816832 -24878922 + SATR1 Satellite Satellite 1 972 -9 2395 150 108 5 chr15 60816865 60818116 -24877638 + SATR1 Satellite Satellite 1 1379 -1 1639 217 126 5 chr15 60818145 60818687 -24877067 - SATR1 Satellite Satellite -221 607 1 4534 12 8 0 chr15 60818687 60819201 -24876553 + L1PA4 LINE L1 4148 4665 -1481 8132 27 0 1 chr15 60819205 60820357 -24875397 + L1PA4 LINE L1 5004 6154 -1 30 0 0 0 chr15 60820369 60820399 -24875355 + AT_rich Low_complexity Low_complexity 1 30 0 825 90 41 8 chr15 60820399 60820521 -24875233 - L1MB3 LINE L1 -2 6181 6056 10174 26 0 1 chr15 60820623 60822523 -24873231 + L1PA2 LINE L1 4255 6153 -2 22 0 0 0 chr15 60822548 60822570 -24873184 + AT_rich Low_complexity Low_complexity 1 22 0 420 275 77 31 chr15 60822687 60822789 -24872965 + L1ME LINE L1 5438 5534 -587 1866 128 94 16 chr15 60822789 60823108 -24872646 - MER7A DNA MER2_type 0 346 5 420 275 77 31 chr15 60823108 60823227 -24872527 + L1ME LINE L1 5534 5669 -452 * 4816 102 6 0 chr15 60823214 60823874 -24871880 + L1PA13 LINE L1 5476 6139 -24 25 75 0 0 chr15 60823875 60823928 -24871826 + AT_rich Low_complexity Low_complexity 1 53 0 2592 23 7 7 chr15 60823992 60824297 -24871457 - AluY SINE Alu -6 305 1 352 197 0 0 chr15 60824298 60824359 -24871395 - Tigger3(Golem) DNA MER2_type -1 3028 2968 249 67 0 0 chr15 60824360 60824390 -24871364 - L1PA13 LINE L1 -27 6136 6107 1652 80 0 14 chr15 60824571 60824784 -24870970 + L1PA8 LINE L1 5956 6165 -7 2447 227 64 36 chr15 60825673 60826250 -24869504 - MLT1E LTR MaLR 0 593 1 452 288 89 53 chr15 60828340 60828642 -24867112 + L1M4 LINE L1 2489 2801 -3345 2167 116 6 9 chr15 60828917 60829244 -24866510 - L1MB2 LINE L1 0 6171 5846 186 43 0 0 chr15 60829443 60829466 -24866288 + (TA)n Simple_repeat Simple_repeat 1 23 0 2833 6 0 10 chr15 60829555 60829867 -24865887 - AluYa5 SINE Alu -2 309 1 29 28 0 0 chr15 60830362 60830398 -24865356 + AT_rich Low_complexity Low_complexity 1 36 0 2268 119 0 6 chr15 60831389 60831701 -24864053 - AluSg SINE Alu 0 310 1 458 267 52 100 chr15 60832053 60832418 -24863336 - MLT1I LTR MaLR -26 383 63 398 256 86 8 chr15 60832512 60832629 -24863125 - MIR3 SINE MIR -44 164 39 2350 134 90 8 chr15 60834004 60834391 -24861363 + MSTA LTR MaLR 10 428 0 1506 191 120 19 chr15 60834663 60835030 -24860724 + MLT1E1 LTR MaLR 2 405 -249 324 183 43 32 chr15 60835130 60835223 -24860531 + L1MB4 LINE L1 6087 6180 0 349 286 100 18 chr15 60835282 60835502 -24860252 + L2 LINE L2 1815 2052 -1262 218 314 10 10 chr15 60835702 60835804 -24859950 + L2 LINE L2 2398 2499 -815 323 329 89 28 chr15 60835961 60836174 -24859580 + L2 LINE L2 2606 2831 -483 194 274 176 0 chr15 60836250 60836301 -24859453 - MER5B DNA MER1_type -57 121 62 718 223 17 6 chr15 60836546 60836721 -24859033 - L1MC3 LINE L1 -420 7365 7189 2297 104 0 0 chr15 60836733 60837031 -24858723 - AluSx SINE Alu -14 298 1 23 0 0 0 chr15 60838451 60838474 -24857280 + AT_rich Low_complexity Low_complexity 1 23 0 182 243 86 29 chr15 60838628 60838698 -24857056 + L3 LINE CR1 1091 1164 -413 671 149 27 180 chr15 60838699 60838868 -24856886 + LTR49 LTR ERV1 1 152 -443 480 259 36 36 chr15 60839208 60839347 -24856407 - MER5A DNA MER1_type -1 188 50 567 315 81 8 chr15 60839939 60840174 -24855580 - MIR SINE MIR 0 262 11 408 323 46 0 chr15 60840185 60840380 -24855374 - L2 LINE L2 -1119 2195 1992 1920 143 0 0 chr15 60840497 60840784 -24854970 - L1PA15 LINE L1 0 6165 5879 699 178 42 0 chr15 60841333 60841443 -24854311 + FLAM_C SINE Alu 1 118 -184 459 0 0 0 chr15 60841443 60841494 -24854260 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 582 276 98 14 chr15 60841526 60841740 -24854014 + MIR SINE MIR 9 240 -22 230 242 30 0 chr15 60842205 60842271 -24853483 - MLT1D LTR MaLR -23 482 415 201 233 22 33 chr15 60842332 60842422 -24853332 + CT-rich Low_complexity Low_complexity 1 89 0 234 200 40 0 chr15 60843039 60843089 -24852665 + MIR SINE MIR 99 150 -58 210 330 68 0 chr15 60844326 60844429 -24851325 - L2 LINE L2 -2493 821 712 244 346 32 51 chr15 60844578 60844734 -24851020 - L2 LINE L2 -2819 495 343 1257 191 32 12 chr15 60844735 60844987 -24850767 + AluJo SINE Alu 1 257 -55 1137 191 53 10 chr15 60845705 60845914 -24849840 - MER20 DNA MER1_type -1 218 1 325 223 152 18 chr15 60846056 60846168 -24849586 + MIR SINE MIR 23 149 -59 265 225 0 35 chr15 60846360 60846529 -24849225 + G-rich Low_complexity Low_complexity 1 163 0 386 335 0 0 chr15 60846547 60846726 -24849028 + G-rich Low_complexity Low_complexity 1 179 0 1434 216 139 51 chr15 60848306 60848726 -24847028 + MLT2B2 LTR ERVL 1 469 -46 452 72 14 0 chr15 60848726 60848795 -24846959 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1434 216 139 51 chr15 60848795 60848847 -24846907 + MLT2B2 LTR ERVL 469 515 0 2523 63 0 0 chr15 60848948 60849251 -24846503 - AluY SINE Alu -8 303 1 236 229 33 0 chr15 60850290 60850351 -24845403 + CT-rich Low_complexity Low_complexity 2 64 0 600 170 105 46 chr15 60851493 60851646 -24844108 - MLT1C LTR MaLR -289 178 17 2328 105 0 0 chr15 60852171 60852467 -24843287 - AluSx SINE Alu -16 296 1 201 283 0 0 chr15 60854992 60855045 -24840709 - MIR SINE MIR -15 247 195 1294 279 68 32 chr15 60855166 60855667 -24840087 + LTR33 LTR ERVL 3 521 0 10877 170 47 30 chr15 60855689 60858487 -24837267 - L1PA5 LINE L1 0 6154 3318 2206 103 0 16 chr15 60858965 60859275 -24836479 - AluY SINE Alu -6 305 1 3116 65 2 2 chr15 60859280 60859680 -24836074 - L1PA8 LINE L1 0 6172 5773 23 0 0 0 chr15 60859681 60859704 -24836050 + AT_rich Low_complexity Low_complexity 1 23 0 440 337 163 18 chr15 60859711 60860043 -24835711 - L1ME LINE L1 -477 5644 5265 29 70 0 0 chr15 60860496 60860553 -24835201 + AT_rich Low_complexity Low_complexity 1 57 0 235 125 25 0 chr15 60860654 60860694 -24835060 + Charlie3 DNA MER1_type 2666 2706 -4 5606 131 3 3 chr15 60860954 60862099 -24833655 - L1PA15 LINE L1 0 6165 5027 825 342 73 43 chr15 60862339 60863053 -24832701 + L1M4 LINE L1 3283 4017 -2129 2293 110 7 0 chr15 60863169 60863469 -24832285 + AluSx SINE Alu 1 302 -10 236 141 13 39 chr15 60863526 60863604 -24832150 + (TA)n Simple_repeat Simple_repeat 2 77 0 274 286 0 0 chr15 60863734 60863811 -24831943 - MLT1L LTR MaLR -382 233 157 21 0 0 0 chr15 60863935 60863956 -24831798 + AT_rich Low_complexity Low_complexity 1 21 0 263 289 52 0 chr15 60863960 60864057 -24831697 + L1M4 LINE L1 4035 4136 -2010 1755 127 52 86 chr15 60864270 60864656 -24831098 + THE1C LTR MaLR 3 375 0 548 338 93 29 chr15 60864661 60865094 -24830660 - L2 LINE L2 -215 3057 2583 1765 169 37 67 chr15 60865094 60865496 -24830258 + MLT1B LTR MaLR 1 390 0 548 338 93 29 chr15 60865496 60865589 -24830165 - L2 LINE L2 -689 2583 2497 234 167 33 17 chr15 60865610 60865670 -24830084 + L1M4 LINE L1 4159 4219 -1927 655 294 56 64 chr15 60865808 60866165 -24829589 + L3 LINE CR1 1222 1575 -2 228 35 0 0 chr15 60866760 60866789 -24828965 + (TG)n Simple_repeat Simple_repeat 2 30 0 227 298 48 48 chr15 60868164 60868268 -24827486 - L2 LINE L2 0 3272 3169 1057 209 133 13 chr15 60869040 60869342 -24826412 + MER58B DNA MER1_type 4 341 0 288 271 24 12 chr15 60871557 60871642 -24824112 - MLT1L LTR MaLR -335 280 195 264 254 0 0 chr15 60872540 60872599 -24823155 - MIR SINE MIR -6 256 198 203 0 37 0 chr15 60872928 60872955 -24822799 + (TG)n Simple_repeat Simple_repeat 1 28 0 326 374 110 4 chr15 60873161 60873388 -24822366 + L1 LINE L1 3593 3843 -2303 30180 41 33 2 chr15 60873398 60877364 -24818390 + L1P LINE L1 1 4091 -2055 24310 34 0 1 chr15 60877464 60880569 -24815185 - L1P LINE L1 -1114 5032 1930 1206 103 6 5 chr15 60880850 60881052 -24814702 + L1MB2 LINE L1 5830 6033 -138 1988 142 35 0 chr15 60881134 60881472 -24814282 - L1MC1 LINE L1 -18 6315 5966 2272 98 3 0 chr15 60881472 60881768 -24813986 - AluY SINE Alu -14 297 1 1541 106 4 49 chr15 60881770 60882035 -24813719 - LTR8 LTR ERV1 -438 253 1 1110 161 72 34 chr15 60882110 60882346 -24813408 + MLT1D LTR MaLR 1 245 -260 719 134 27 0 chr15 60882347 60882459 -24813295 + FLAM_C SINE Alu 12 126 -17 379 213 0 0 chr15 60882482 60882557 -24813197 + MLT1D LTR MaLR 276 350 -155 2326 102 69 3 chr15 60882573 60882934 -24812820 + MER1A DNA MER1_type 4 388 -141 415 207 302 18 chr15 60883045 60883214 -24812540 + MIR SINE MIR 45 261 -1 257 296 12 37 chr15 60883669 60883750 -24812004 + L2 LINE L2 3186 3264 -8 4390 50 8 0 chr15 60884179 60884777 -24810977 + L1P LINE L1 2 604 -5542 968 56 0 0 chr15 60884877 60885002 -24810752 + L1P2 LINE L1 5591 5715 -439 18718 48 51 3 chr15 60885237 60887768 -24807986 + L1P LINE L1 1 2654 -3492 633 346 20 30 chr15 60888161 60888670 -24807084 - HAL1 LINE L1 -694 1813 1310 1244 68 0 0 chr15 60888847 60889009 -24806745 - L1PA14 LINE L1 -3 6158 5997 551 221 33 44 chr15 60889528 60889732 -24806022 + L1ME3A LINE L1 5960 6163 -7 2260 108 0 0 chr15 60889741 60890029 -24805725 + AluSc SINE Alu 1 288 -21 605 295 154 13 chr15 60890473 60890700 -24805054 - MIR SINE MIR -1 261 3 319 301 44 29 chr15 60891448 60891584 -24804170 - L2 LINE L2 -1 3271 3134 296 294 17 17 chr15 60892063 60892182 -24803572 - L2 LINE L2 -1022 2292 2174 664 118 29 29 chr15 60893367 60893503 -24802251 - MER53 DNA DNA -52 137 2 737 183 99 127 chr15 60893570 60893985 -24801769 + LTR50 LTR ERVL 295 782 -13 325 152 0 0 chr15 60894209 60894275 -24801479 + L1PB3 LINE L1 6082 6147 -7 26 0 0 0 chr15 60894275 60894301 -24801453 + AT_rich Low_complexity Low_complexity 1 26 0 565 304 14 18 chr15 60894554 60894840 -24800914 - HAL1b LINE L1 -574 774 490 267 305 43 71 chr15 60894966 60895107 -24800647 + L2 LINE L2 3136 3272 0 210 278 31 0 chr15 60895550 60895647 -24800107 + (TA)n Simple_repeat Simple_repeat 2 101 0 225 261 0 0 chr15 60896173 60896219 -24799535 - MER91 DNA MER1_type -3 193 148 24 0 0 0 chr15 60896391 60896415 -24799339 + AT_rich Low_complexity Low_complexity 1 24 0 303 319 125 43 chr15 60896493 60896678 -24799076 - L1M4 LINE L1 -3515 2631 2463 1700 199 10 10 chr15 60896678 60896990 -24798764 - AluJo SINE Alu 0 312 1 303 319 125 43 chr15 60896990 60897268 -24798486 - L1M4 LINE L1 -3683 2463 2130 2223 90 4 0 chr15 60897781 60898084 -24797670 - AluY SINE Alu 0 304 1 501 97 0 0 chr15 60898340 60898412 -24797342 + (TA)n Simple_repeat Simple_repeat 1 72 0 266 278 40 6 chr15 60899304 60899477 -24796277 + (TA)n Simple_repeat Simple_repeat 2 180 0 237 181 106 43 chr15 60899565 60899659 -24796095 + L1MC5 LINE L1 7818 7917 -44 306 278 113 0 chr15 60899773 60899888 -24795866 + L1M4 LINE L1 3912 4039 -2107 738 314 38 4 chr15 60899900 60900136 -24795618 - MIR SINE MIR -10 252 9 410 388 55 5 chr15 60900267 60900703 -24795051 + L1M4 LINE L1 4151 4608 -1538 947 236 35 13 chr15 60900704 60901054 -24794700 + MLT1B LTR MaLR 1 379 -8 888 195 11 0 chr15 60901152 60901337 -24794417 + L1MC4 LINE L1 7162 7348 -694 679 294 25 15 chr15 60901349 60901550 -24794204 + MIR SINE MIR 9 211 -51 1924 216 75 18 chr15 60901568 60902076 -24793678 + L1MC4 LINE L1 7382 7918 -124 180 273 0 0 chr15 60902113 60902168 -24793586 + (CA)n Simple_repeat Simple_repeat 2 56 0 288 0 0 0 chr15 60902252 60902284 -24793470 + (TG)n Simple_repeat Simple_repeat 1 32 0 444 234 16 8 chr15 60902286 60902414 -24793340 + L1MC4 LINE L1 7914 8042 0 696 267 24 0 chr15 60903376 60903541 -24792213 - MIR SINE MIR -17 245 77 494 222 62 37 chr15 60903925 60904087 -24791667 + MIR SINE MIR 70 235 -27 2134 133 3 0 chr15 60904729 60905038 -24790716 + AluSx SINE Alu 1 310 -2 2331 113 0 10 chr15 60905440 60905750 -24790004 + AluSg SINE Alu 1 307 -3 784 262 11 0 chr15 60905813 60906000 -24789754 + MER5A DNA MER1_type 1 189 0 347 335 32 32 chr15 60907016 60907171 -24788583 - MIR3 SINE MIR -9 199 45 400 164 78 43 chr15 60907413 60907529 -24788225 + MLT1D LTR MaLR 3 122 -383 7742 18 1 1 chr15 60907629 60909165 -24786589 + L1PA2 LINE L1 4620 6155 0 27 0 0 0 chr15 60909187 60909214 -24786540 + AT_rich Low_complexity Low_complexity 1 27 0 2031 116 4 0 chr15 60909645 60909922 -24785832 + AluSx SINE Alu 1 278 -34 839 49 49 0 chr15 60910664 60910806 -24784948 + (TC)n Simple_repeat Simple_repeat 1 149 0 2611 50 7 0 chr15 60911228 60911531 -24784223 - AluY SINE Alu -6 305 1 360 243 142 90 chr15 60912771 60913137 -24782617 - MLT1H LTR MaLR -70 479 95 752 212 0 54 chr15 60914515 60914699 -24781055 + L1MC4 LINE L1 6460 6633 -1409 1165 234 227 8 chr15 60914711 60915353 -24780401 + L1MC4 LINE L1 6971 7901 -141 27 29 0 0 chr15 60915390 60915424 -24780330 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr15 60915688 60915713 -24780041 + AT_rich Low_complexity Low_complexity 1 25 0 320 267 139 41 chr15 60915747 60916023 -24779731 + L1MEd LINE L1 1016 1420 -1070 23 0 0 0 chr15 60916113 60916136 -24779618 + AT_rich Low_complexity Low_complexity 1 23 0 33089 42 32 2 chr15 60916774 60920836 -24774918 - L1P LINE L1 -1961 4185 1 1177 57 0 0 chr15 60921071 60921212 -24774542 - L1P2 LINE L1 -439 5715 5575 1548 35 0 30 chr15 60921216 60921413 -24774341 + L1PA5 LINE L1 5964 6154 0 1167 279 68 32 chr15 60921435 60921936 -24773818 - LTR33 LTR ERVL 0 521 3 201 338 0 0 chr15 60922057 60922125 -24773629 + MIR SINE MIR 195 262 0 2365 98 0 20 chr15 60922274 60922580 -24773174 + AluSq SINE Alu 1 300 -13 1925 130 3 11 chr15 60922580 60922864 -24772890 + AluSx SINE Alu 1 282 -30 189 74 0 0 chr15 60922870 60922897 -24772857 + (TAA)n Simple_repeat Simple_repeat 2 28 0 764 204 0 0 chr15 60922901 60923043 -24772711 + FLAM_C SINE Alu 2 143 0 207 216 20 0 chr15 60923272 60923323 -24772431 + (ATG)n Simple_repeat Simple_repeat 1 52 0 * 231 255 0 0 chr15 60923316 60923367 -24772387 + GA-rich Low_complexity Low_complexity 2 52 0 330 214 18 54 chr15 60923608 60923720 -24772034 - MIR SINE MIR -55 207 100 510 161 0 0 chr15 60924061 60924173 -24771581 + CT-rich Low_complexity Low_complexity 2 113 0 375 246 7 21 chr15 60924858 60925000 -24770754 - MER113 DNA MER1_type? -292 229 90 294 340 31 13 chr15 60925248 60925407 -24770347 + MIR3 SINE MIR 17 178 -30 2106 61 71 4 chr15 60925588 60925868 -24769886 - AluY SINE Alu -12 299 1 294 307 142 0 chr15 60925962 60926138 -24769616 + MLT1J LTR MaLR 2 202 -309 296 247 39 60 chr15 60926250 60926380 -24769374 + MLT1J LTR MaLR 278 450 0 4484 124 87 13 chr15 60926441 60927201 -24768553 - L1MC1 LINE L1 -1 6332 5517 753 155 26 93 chr15 60927201 60927289 -24768465 + MLT1A1 LTR MaLR 1 71 -294 2572 50 0 0 chr15 60927289 60927586 -24768168 + AluY SINE Alu 1 297 -14 753 155 26 93 chr15 60927586 60927690 -24768064 + MLT1A1 LTR MaLR 71 180 -185 774 214 74 28 chr15 60927719 60927935 -24767819 + MLT1A1 LTR MaLR 162 354 -11 241 298 252 0 chr15 60928188 60928319 -24767435 + MIR3 SINE MIR 37 200 -8 253 306 156 33 chr15 60928380 60928655 -24767099 + L2 LINE L2 3000 3308 -5 882 161 93 52 chr15 60929666 60929859 -24765895 + MER20 DNA MER1_type 3 203 -16 1671 166 10 37 chr15 60930119 60930414 -24765340 - AluJo SINE Alu -25 287 1 438 267 17 17 chr15 60930609 60930785 -24764969 + MER104 DNA MER2_type 4 179 -1 206 31 0 31 chr15 60931008 60931040 -24764714 + (TG)n Simple_repeat Simple_repeat 1 31 0 487 314 112 67 chr15 60931418 60932097 -24763657 - L2 LINE L2 -249 3023 2319 2488 57 10 3 chr15 60932281 60932579 -24763175 - AluY SINE Alu -11 300 1 204 226 0 19 chr15 60934877 60934930 -24760824 + CT-rich Low_complexity Low_complexity 4 55 0 237 244 200 0 chr15 60935080 60935170 -24760584 + MIR SINE MIR 30 137 -71 498 302 133 30 chr15 60935213 60935514 -24760240 - MER102b DNA MER1_type -1 340 9 208 309 75 21 chr15 60935920 60936014 -24759740 + L2 LINE L2 3136 3234 -38 2771 173 14 60 chr15 60936079 60936663 -24759091 - MER74A LTR ERVL 0 558 2 2297 105 0 0 chr15 60937655 60937951 -24757803 - AluSg SINE Alu -14 296 1 229 323 20 10 chr15 60939024 60939123 -24756631 - MIR SINE MIR -77 131 32 1847 184 0 0 chr15 60939553 60939852 -24755902 + AluJb SINE Alu 2 300 -12 183 206 219 14 chr15 60940890 60940963 -24754791 + MIR3 SINE MIR 81 168 -40 785 235 16 0 chr15 60941217 60941400 -24754354 - MIR SINE MIR -5 257 72 2512 115 11 11 chr15 60941579 60941943 -24753811 - THE1B LTR MaLR 0 364 1 278 297 20 0 chr15 60942033 60942134 -24753620 + MER103 DNA DNA 63 165 -1 330 318 62 51 chr15 60942279 60942474 -24753280 + L2 LINE L2 3076 3272 0 2884 128 30 13 chr15 60942710 60943180 -24752574 + L1MB2 LINE L1 5426 5903 -268 2237 113 28 50 chr15 60943180 60943601 -24752153 + L1MB3 LINE L1 5770 6183 0 436 318 40 6 chr15 60944881 60945057 -24750697 + Charlie8 DNA MER1_type 3 184 -2233 2198 110 3 17 chr15 60945205 60945505 -24750249 - AluSx SINE Alu -16 296 1 678 188 29 12 chr15 60949447 60949625 -24746129 + MER20 DNA MER1_type 7 219 0 2400 167 71 14 chr15 60950211 60950647 -24745107 + MLT1C LTR MaLR 2 462 -5 994 141 92 35 chr15 60950944 60951171 -24744583 - L1MB8 LINE L1 -200 5978 5739 572 309 93 15 chr15 60951250 60951593 -24744161 - LTR16B LTR ERVL -7 457 88 243 284 35 71 chr15 60951650 60951791 -24743963 - MIR SINE MIR -80 182 47 2435 119 106 10 chr15 60951799 60952195 -24743559 + MER57B LTR ERV1 1 434 0 23 0 0 0 chr15 60952442 60952465 -24743289 + AT_rich Low_complexity Low_complexity 1 23 0 237 320 58 19 chr15 60952836 60952939 -24742815 + L2 LINE L2 3153 3259 -13 521 62 74 25 chr15 60953928 60954009 -24741745 + MER51A LTR ERV1 1 85 -549 2008 176 70 36 chr15 60954009 60954453 -24741301 + LTR2B LTR ERV1 32 490 0 2098 127 120 34 chr15 60954453 60954887 -24740867 + MER51A LTR ERV1 170 634 0 558 224 28 84 chr15 60956219 60956398 -24739356 + MIR SINE MIR 57 225 -37 318 256 35 71 chr15 60957693 60957914 -24737840 + MIR3 SINE MIR 5 215 -47 399 41 0 0 chr15 60957948 60957997 -24737757 + (CAT)n Simple_repeat Simple_repeat 1 49 0 392 151 0 41 chr15 60958053 60958126 -24737628 - MER20 DNA MER1_type 0 219 150 392 151 0 41 chr15 60958135 60958208 -24737546 - MER20 DNA MER1_type 0 219 150 270 86 0 0 chr15 60958335 60958370 -24737384 - Alu SINE Alu -268 35 1 193 311 211 0 chr15 60958404 60958494 -24737260 + L2 LINE L2 3195 3303 -10 1994 113 0 0 chr15 60958495 60958760 -24736994 + AluSg SINE Alu 39 303 -7 288 287 49 16 chr15 60959208 60959330 -24736424 + L2 LINE L2 3146 3271 -42 799 86 0 16 chr15 60960058 60960186 -24735568 + (TGGA)n Simple_repeat Simple_repeat 2 127 0 3641 102 14 2 chr15 60960887 60961405 -24734349 - L1PA14 LINE L1 -30 6131 5608 575 199 107 8 chr15 60963367 60963498 -24732256 - MER67C LTR ERV1 -62 648 505 810 242 167 0 chr15 60963505 60963786 -24731968 - MER67C LTR ERV1 -379 331 4 643 263 59 11 chr15 60964182 60964368 -24731386 + MIR SINE MIR 31 225 -37 274 321 77 48 chr15 60965194 60965362 -24730392 - MIR3 SINE MIR -19 189 17 1922 104 7 28 chr15 60966000 60966287 -24729467 - Tigger2 DNA MER2_type -1 2717 2437 1490 183 48 103 chr15 60966360 60966835 -24728919 + L1MDa LINE L1 833 1281 -5259 24 53 0 0 chr15 60967746 60967784 -24727970 + AT_rich Low_complexity Low_complexity 1 38 0 519 277 7 7 chr15 60968674 60968815 -24726939 - MIR SINE MIR -31 231 91 1790 163 0 27 chr15 60968830 60969131 -24726623 + AluJo SINE Alu 1 293 -19 1072 164 6 0 chr15 60969131 60969296 -24726458 + AluJb SINE Alu 134 299 -13 22 56 0 0 chr15 60969929 60969965 -24725789 + AT_rich Low_complexity Low_complexity 1 36 0 197 273 0 0 chr15 60970494 60970538 -24725216 + MIR SINE MIR 105 148 -114 315 315 79 0 chr15 60970753 60970880 -24724874 + MIR3 SINE MIR 10 146 -62 1749 160 3 19 chr15 60971203 60971510 -24724244 + AluSx SINE Alu 1 302 -10 267 308 211 8 chr15 60971810 60971943 -24723811 + MIR3 SINE MIR 30 189 -19 236 341 37 12 chr15 60972408 60972490 -24723264 + MIR SINE MIR 22 105 -103 618 225 144 23 chr15 60972681 60972854 -24722900 - MIR SINE MIR -32 230 37 2067 221 35 53 chr15 60973264 60973812 -24721942 + MER34 LTR ERV1 3 540 -2 314 305 63 55 chr15 60974399 60974569 -24721185 - MIR3 SINE MIR 0 208 34 457 138 21 0 chr15 60974624 60974718 -24721036 + GA-rich Low_complexity Low_complexity 3 98 0 882 304 42 41 chr15 60974721 60975194 -24720560 + MER115 DNA AcHobo 152 678 -15 428 278 169 4 chr15 60975553 60975819 -24719935 + L1M4 LINE L1 3693 4002 -2144 779 93 0 0 chr15 60975997 60976094 -24719660 + AluS SINE Alu 2 98 -215 2002 131 7 7 chr15 60976429 60976726 -24719028 - AluSx SINE Alu -13 299 3 246 181 167 28 chr15 60976777 60976849 -24718905 + L1P LINE L1 4159 4240 -1906 452 318 123 62 chr15 60976860 60977727 -24718027 + L1M4 LINE L1 4241 5160 -986 233 333 0 0 chr15 60977739 60977790 -24717964 - L2 LINE L2 -14 3258 3208 636 293 103 52 chr15 60977826 60978195 -24717559 + MLT1J2 LTR MaLR 63 450 0 1877 152 50 42 chr15 60978666 60979027 -24716727 + THE1B LTR MaLR 1 364 0 2273 117 0 3 chr15 60979289 60979588 -24716166 + AluSq SINE Alu 1 298 -15 691 206 85 32 chr15 60979729 60979918 -24715836 + MER105 DNA DNA 2 200 -4 330 26 0 0 chr15 60980962 60981001 -24714753 + (CA)n Simple_repeat Simple_repeat 2 40 0 204 193 24 60 chr15 60981841 60981924 -24713830 + GA-rich Low_complexity Low_complexity 3 82 0 432 0 0 0 chr15 60982426 60982474 -24713280 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 282 26 0 chr15 60982720 60982798 -24712956 + GA-rich Low_complexity Low_complexity 2 81 0 1071 204 112 20 chr15 60982828 60983078 -24712676 + ORSL DNA AcHobo 3 275 0 405 229 63 0 chr15 60983932 60984059 -24711695 + MIR SINE MIR 60 192 -62 384 22 0 0 chr15 60984331 60984376 -24711378 + (CA)n Simple_repeat Simple_repeat 1 45 0 1927 130 58 0 chr15 60984863 60985156 -24710598 - AluSq SINE Alu -3 310 1 388 274 297 0 chr15 60985423 60985598 -24710156 - MIR SINE MIR -24 238 12 222 254 0 0 chr15 60986975 60987030 -24708724 + MIR3 SINE MIR 151 205 -3 432 313 37 0 chr15 60987637 60987771 -24707983 + MIR SINE MIR 50 188 -74 1114 210 64 8 chr15 60987834 60988133 -24707621 - MLT1A1 LTR MaLR -2 363 15 186 200 0 0 chr15 60988332 60988362 -24707392 - MER5A DNA MER1_type 0 189 160 1498 194 82 0 chr15 60988381 60988649 -24707105 + MLT1A1 LTR MaLR 73 362 -3 1393 237 84 19 chr15 60988657 60989028 -24706726 - MLT2B1 LTR ERVL -124 396 2 312 175 75 25 chr15 60989028 60989108 -24706646 + MIR SINE MIR 84 167 -95 1177 184 125 3 chr15 60989257 60989723 -24706031 + MER21A LTR ERV1 5 548 -315 2410 101 64 20 chr15 60989724 60990082 -24705672 + THE1C LTR MaLR 1 374 -1 10150 108 60 16 chr15 60990088 60990494 -24705260 + THE1C-int LTR MaLR 19 406 -1174 2199 128 3 0 chr15 60990494 60990791 -24704963 + AluSx SINE Alu 1 298 -14 10150 108 60 16 chr15 60990791 60991879 -24703875 + THE1C-int LTR MaLR 406 1579 -1 2344 139 13 16 chr15 60991879 60992253 -24703501 + THE1C LTR MaLR 3 375 0 1953 124 3 25 chr15 60992253 60992567 -24703187 + MER21A LTR ERV1 625 931 0 7583 204 143 23 chr15 60992733 60994752 -24701002 + L1M4c LINE L1 423 2786 -3596 1845 149 35 0 chr15 60994752 60995040 -24700714 + AluSx SINE Alu 5 302 -10 7583 204 143 23 chr15 60995040 60995465 -24700289 + L1M4c LINE L1 2786 3159 -3223 831 164 0 0 chr15 60995482 60995610 -24700144 + FLAM_C SINE Alu 1 128 -5 2930 163 57 14 chr15 60995623 60996188 -24699566 + L1MB3 LINE L1 5593 6181 -2 748 292 26 9 chr15 60996267 60996500 -24699254 + MIR SINE MIR 25 261 -1 319 333 153 32 chr15 60996588 60996991 -24698763 + L2 LINE L2 2620 3069 -203 1887 100 52 7 chr15 60997498 60997767 -24697987 - AluSx SINE Alu -6 306 26 1954 100 0 36 chr15 60998923 60999203 -24696551 + AluSx SINE Alu 5 274 -38 986 280 97 22 chr15 60999208 60999737 -24696017 - L2 LINE L2 -77 3236 2671 2375 83 0 0 chr15 60999748 61000050 -24695704 + AluY SINE Alu 1 302 -9 495 252 169 14 chr15 61000054 61000397 -24695357 + L1ME3 LINE L1 2153 2506 -3709 1098 272 73 61 chr15 61000677 61001980 -24693774 + L1ME3 LINE L1 4473 5803 -428 1469 215 79 0 chr15 61001980 61002296 -24693458 - MER58B DNA MER1_type 0 341 1 1098 272 73 61 chr15 61002296 61002469 -24693285 + L1ME3 LINE L1 5803 5972 -259 895 251 132 34 chr15 61002469 61002731 -24693023 - LTR16B LTR ERVL 0 464 144 1494 189 67 0 chr15 61002731 61003016 -24692738 - AluJo SINE Alu -8 304 1 895 251 132 34 chr15 61003016 61003171 -24692583 - LTR16B LTR ERVL -320 144 6 577 170 21 0 chr15 61004139 61004233 -24691521 - AluSg SINE Alu -213 97 2 2628 106 47 3 chr15 61004278 61004637 -24691117 + THE1C LTR MaLR 1 375 0 401 224 65 19 chr15 61004904 61005011 -24690743 - HAL1b LINE L1 -845 503 392 379 346 15 0 chr15 61005011 61005147 -24690607 + C-rich Low_complexity Low_complexity 6 143 0 282 191 11 22 chr15 61005147 61005236 -24690518 + CT-rich Low_complexity Low_complexity 3 90 0 462 283 18 10 chr15 61005392 61005663 -24690091 + MLT1I LTR MaLR 80 407 -2 3917 204 102 12 chr15 61005716 61006645 -24689109 - Charlie1a DNA MER1_type 0 1455 443 327 130 0 72 chr15 61006875 61006944 -24688810 - MLT1F LTR MaLR -20 547 484 * 1639 230 45 20 chr15 61006942 61007299 -24688455 - MLT1F LTR MaLR -176 366 1 1595 245 14 3 chr15 61007305 61007660 -24688094 - Charlie1a DNA MER1_type -1096 359 1 180 0 0 0 chr15 61007906 61007926 -24687828 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2124 74 34 0 chr15 61007928 61008076 -24687678 - AluY SINE Alu -33 278 116 217 0 61 0 chr15 61008076 61008109 -24687645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2124 74 34 0 chr15 61008109 61008229 -24687525 - AluY SINE Alu -195 116 1 2073 114 6 19 chr15 61008267 61008583 -24687171 - AluSx SINE Alu 0 312 1 1690 159 10 13 chr15 61008993 61009295 -24686459 - L1MB7 LINE L1 -5 6179 5879 1443 129 30 9 chr15 61009402 61009635 -24686119 + AluSg SINE Alu 62 299 -11 26 0 0 0 chr15 61009636 61009662 -24686092 + AT_rich Low_complexity Low_complexity 1 26 0 814 316 41 34 chr15 61010407 61010905 -24684849 + L1ME LINE L1 5328 5818 -303 7645 191 29 15 chr15 61010967 61012214 -24683540 + L1 LINE L1 3472 4746 -1400 663 202 24 40 chr15 61012214 61012338 -24683416 + FLAM_A SINE Alu 1 122 -11 7645 191 29 15 chr15 61012338 61012652 -24683102 + L1 LINE L1 4746 5054 -1092 274 270 321 20 chr15 61012666 61012962 -24682792 + L2 LINE L2 2148 2532 -782 381 302 204 27 chr15 61013077 61013405 -24682349 + L2 LINE L2 2928 3313 0 872 139 28 83 chr15 61013442 61013594 -24682160 - L1MC3 LINE L1 -17 7768 7630 2047 98 45 0 chr15 61013594 61013880 -24681874 - AluY SINE Alu -12 299 1 872 139 28 83 chr15 61013880 61013943 -24681811 - L1MC3 LINE L1 -155 7630 7565 2637 77 9 0 chr15 61013947 61014287 -24681467 + THE1B LTR MaLR 3 345 -19 4491 166 34 7 chr15 61014290 61014966 -24680788 - L1MC3 LINE L1 -223 7562 6858 180 0 0 0 chr15 61014966 61014986 -24680768 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 4491 166 34 7 chr15 61014986 61015145 -24680609 - L1MC3 LINE L1 -927 6858 6705 521 247 131 101 chr15 61015158 61015593 -24680161 + L1ME4a LINE L1 5476 5937 -184 2394 83 0 10 chr15 61015593 61015907 -24679847 - AluY SINE Alu 0 311 1 521 247 131 101 chr15 61015907 61016098 -24679656 + L1ME4a LINE L1 5937 6121 0 326 345 63 75 chr15 61017629 61017991 -24677763 - L2 LINE L2 -5 3267 2910 269 279 155 25 chr15 61018046 61018207 -24677547 - L2 LINE L2 -493 2821 2640 2838 167 41 32 chr15 61018762 61019300 -24676454 + MER67A LTR ERV1 1 543 0 558 225 16 8 chr15 61019482 61019611 -24676143 + MER103 DNA DNA 36 165 -1 1219 138 11 5 chr15 61019969 61020158 -24675596 + AluY SINE Alu 1 190 -121 697 118 0 20 chr15 61020158 61020260 -24675494 + AluY SINE Alu 57 156 -155 433 230 97 78 chr15 61021473 61021730 -24674024 + HAL1 LINE L1 1206 1467 -1040 320 174 4 0 chr15 61021730 61021797 -24673957 + Alu SINE Alu 1 47 -253 674 241 128 85 chr15 61022252 61022571 -24673183 + MLT1J LTR MaLR 16 348 -163 303 119 0 17 chr15 61022598 61022657 -24673097 + L1MA2 LINE L1 6247 6304 0 1587 144 15 26 chr15 61022668 61022932 -24672822 + AluJb SINE Alu 1 261 -51 253 287 269 18 chr15 61023923 61024036 -24671718 - L2 LINE L2 -1 3271 3188 1767 163 10 17 chr15 61024036 61024337 -24671417 + AluJo SINE Alu 2 300 -12 253 287 269 18 chr15 61024337 61024446 -24671308 - L2 LINE L2 -84 3188 2993 309 283 63 31 chr15 61026377 61026568 -24669186 + L2 LINE L2 1527 1723 -1591 2063 189 36 39 chr15 61026570 61027010 -24668744 + MLT1D LTR MaLR 1 439 -66 192 40 0 0 chr15 61027010 61027035 -24668719 + (TTG)n Simple_repeat Simple_repeat 2 26 0 808 71 0 0 chr15 61027038 61027136 -24668618 - AluSg/x SINE Alu -30 280 183 251 206 124 41 chr15 61028362 61028459 -24667295 - L2 LINE L2 0 3272 3168 443 60 15 0 chr15 61028894 61028961 -24666793 + (CA)n Simple_repeat Simple_repeat 2 69 0 1027 185 11 5 chr15 61030007 61030196 -24665558 + MER20 DNA MER1_type 30 219 0 585 129 24 0 chr15 61030771 61030856 -24664898 + AluSg/x SINE Alu 209 295 -15 2438 73 0 3 chr15 61032075 61032377 -24663377 - AluSg SINE Alu -9 301 1 273 345 67 8 chr15 61032637 61032756 -24662998 + L2 LINE L2 3138 3263 -9 1225 291 66 63 chr15 61032849 61033828 -24661926 - L2 LINE L2 -153 3160 2183 252 258 0 0 chr15 61034625 61034687 -24661067 - L1ME LINE L1 -302 5868 5807 880 234 5 32 chr15 61034727 61034915 -24660839 - MER5A DNA MER1_type -5 184 2 1301 252 111 14 chr15 61034922 61035550 -24660204 - L1ME LINE L1 -367 5803 5126 259 279 137 6 chr15 61035550 61035711 -24660043 - MER5C DNA MER1_type -9 315 134 297 360 8 16 chr15 61036103 61036228 -24659526 + L3 LINE CR1 399 522 -1055 238 246 115 0 chr15 61036368 61036429 -24659325 + L2 LINE L2 3137 3204 -68 2009 255 32 23 chr15 61036515 61037072 -24658682 + L1M2 LINE L1 466 1027 -6462 6158 210 52 24 chr15 61037143 61040071 -24655683 + L1M2 LINE L1 1899 4917 -2648 43995 31 21 1 chr15 61040077 61046107 -24649647 + L1PA2 LINE L1 1 6154 -1 10159 148 29 21 chr15 61046092 61046253 -24649501 + L1M2 LINE L1 4891 5049 -2661 * 2168 109 7 0 chr15 61046253 61046546 -24649208 - AluSx SINE Alu -17 295 1 10159 148 29 21 chr15 61046546 61047894 -24647860 + L1M2 LINE L1 5049 6384 -1326 2139 133 0 0 chr15 61047894 61048194 -24647560 + AluSx SINE Alu 1 300 -12 10159 148 29 21 chr15 61048194 61048658 -24647096 + L1M2 LINE L1 6384 6889 -821 1847 108 93 0 chr15 61048658 61048767 -24646987 + AluSx SINE Alu 1 98 -214 183 42 0 0 chr15 61048767 61048791 -24646963 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1847 108 93 0 chr15 61048791 61048959 -24646795 + AluSx SINE Alu 98 304 -8 10159 148 29 21 chr15 61048959 61049108 -24646646 + L1M2 LINE L1 6889 7035 -675 507 231 52 71 chr15 61049103 61049315 -24646439 - L1MEc LINE L1 -3712 2503 2296 * 684 115 0 0 chr15 61049337 61049441 -24646313 + (TA)n Simple_repeat Simple_repeat 1 104 0 1708 170 40 0 chr15 61049447 61049723 -24646031 - AluJo SINE Alu -25 287 1 319 301 75 62 chr15 61049746 61050068 -24645686 - L1MEc LINE L1 -4094 2302 1977 189 388 61 18 chr15 61050424 61050589 -24645165 - L2 LINE L2 -861 2453 2282 * 194 357 158 11 chr15 61050588 61050860 -24644894 - L3 LINE CR1 -6 1571 1260 227 333 87 8 chr15 61051263 61051389 -24644365 - MIR SINE MIR -90 172 37 1833 189 61 59 chr15 61051549 61052024 -24643730 + MLT1D LTR MaLR 1 476 -29 539 330 94 55 chr15 61052112 61052635 -24643119 + L2 LINE L2 2205 2761 -553 1433 171 111 7 chr15 61052635 61052753 -24643001 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 61052753 61052775 -24642979 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1433 171 111 7 chr15 61052775 61052936 -24642818 + AluJo SINE Alu 105 309 -3 539 330 94 55 chr15 61052936 61053081 -24642673 + L2 LINE L2 2761 2899 -415 248 283 63 33 chr15 61053182 61053278 -24642476 - MIR SINE MIR -63 145 51 2191 125 3 0 chr15 61053385 61053690 -24642064 + AluSx SINE Alu 6 311 -1 449 305 24 18 chr15 61054608 61054775 -24640979 + MIR SINE MIR 16 183 -79 357 215 101 0 chr15 61056036 61056115 -24639639 + MLT1J LTR MaLR 13 99 -412 805 221 58 12 chr15 61056126 61056298 -24639456 - MER58A DNA MER1_type -8 216 37 1194 244 62 35 chr15 61056305 61056707 -24639047 + MLT1J LTR MaLR 99 511 0 227 329 12 12 chr15 61056986 61057068 -24638686 + MARNA DNA Mariner 330 411 -175 285 29 0 0 chr15 61059065 61059099 -24636655 + (TG)n Simple_repeat Simple_repeat 2 35 0 922 73 0 0 chr15 61059290 61059400 -24636354 - AluSc SINE Alu -199 110 1 195 129 0 0 chr15 61059428 61059459 -24636295 + (A)n Simple_repeat Simple_repeat 1 31 0 266 264 192 8 chr15 61059558 61059683 -24636071 + HAL1 LINE L1 1743 1890 -617 410 270 78 0 chr15 61059720 61059835 -24635919 - L2 LINE L2 -10 3303 3180 224 200 100 0 chr15 61060535 61060585 -24635169 + L2 LINE L2 3153 3207 -65 2150 111 0 0 chr15 61060762 61061073 -24634681 - AluSg SINE Alu 0 311 1 318 250 48 0 chr15 61061602 61061686 -24634068 - MLT1J1 LTR MaLR -358 88 1 383 325 16 41 chr15 61061969 61062163 -24633591 - MIR SINE MIR 0 262 74 208 278 241 28 chr15 61062277 61062385 -24633369 - MIR3 SINE MIR -43 165 35 761 238 159 30 chr15 61062522 61062917 -24632837 - MLT1J1 LTR MaLR 0 446 1 231 190 17 17 chr15 61064050 61064108 -24631646 - MLT1A1-int LTR MaLR -1309 62 5 1908 138 7 7 chr15 61064257 61064569 -24631185 - AluSx SINE Alu 0 312 1 522 309 0 7 chr15 61064924 61065060 -24630694 - L2 LINE L2 0 3272 3138 2398 70 0 3 chr15 61065750 61066048 -24629706 + AluY SINE Alu 1 297 -14 198 0 0 0 chr15 61066637 61066659 -24629095 + (CCCCAG)n Simple_repeat Simple_repeat 4 25 0 382 256 138 69 chr15 61066886 61066972 -24628782 - MIR SINE MIR -6 256 177 2464 88 3 0 chr15 61066972 61067278 -24628476 + AluSx SINE Alu 1 307 -5 382 256 138 69 chr15 61067278 61067394 -24628360 - MIR SINE MIR -85 177 40 2224 129 0 3 chr15 61067414 61067723 -24628031 + AluSx SINE Alu 1 308 -4 685 75 0 19 chr15 61067723 61067830 -24627924 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 1116 16 22 43 chr15 61067830 61068014 -24627740 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2805 10 0 0 chr15 61068664 61068962 -24626792 - AluY SINE Alu -13 298 1 189 244 0 0 chr15 61069029 61069070 -24626684 + MIR SINE MIR 87 127 -135 186 324 69 29 chr15 61069417 61069519 -24626235 - L2 LINE L2 -4 3268 3163 804 264 32 0 chr15 61069550 61069770 -24625984 + LTR33 LTR ERVL 7 233 -288 2084 102 7 27 chr15 61069873 61070168 -24625586 - AluSx SINE Alu -23 289 1 1409 180 63 68 chr15 61070186 61070553 -24625201 - MLT1A1 LTR MaLR 0 365 1 592 188 235 7 chr15 61071783 61071932 -24623822 - MER20 DNA MER1_type -28 191 9 217 158 0 0 chr15 61072567 61072605 -24623149 + MIR SINE MIR 196 233 -29 311 216 128 29 chr15 61073569 61073671 -24622083 + MIR SINE MIR 95 206 -56 341 305 116 42 chr15 61074408 61074598 -24621156 + MIR SINE MIR 58 261 -1 2262 98 16 10 chr15 61074833 61075138 -24620616 - AluSq SINE Alu -6 307 1 342 0 0 0 chr15 61075159 61075197 -24620557 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 237 52 37 chr15 61075675 61075810 -24619944 - MER5A DNA MER1_type -52 137 1 2089 119 0 3 chr15 61077699 61078019 -24617735 - AluSq SINE Alu 0 319 1 4199 293 87 44 chr15 61078634 61079559 -24616195 + HERV16 LTR ERVL 1167 2051 -2945 2568 173 27 58 chr15 61079559 61080080 -24615674 - MLT1D LTR MaLR 0 505 1 4199 293 87 44 chr15 61080080 61081879 -24613875 + HERV16 LTR ERVL 2051 3775 -1221 412 272 15 37 chr15 61081893 61082029 -24613725 - HERV16 LTR ERVL -2158 2838 2706 2407 90 3 3 chr15 61082029 61082330 -24613424 - AluSp SINE Alu -12 301 1 427 373 5 5 chr15 61082412 61082616 -24613138 + HERV16 LTR ERVL 4135 4338 -1147 363 266 104 29 chr15 61082982 61083155 -24612599 + MLT1J LTR MaLR 231 416 -95 228 140 140 0 chr15 61083483 61083533 -24612221 + MLT1J LTR MaLR 411 467 0 25 31 0 0 chr15 61084601 61084633 -24611121 + AT_rich Low_complexity Low_complexity 1 32 0 214 364 68 0 chr15 61085407 61085525 -24610229 + L3 LINE CR1 1161 1286 -291 276 262 12 60 chr15 61085691 61085775 -24609979 + L3 LINE CR1 1491 1570 -7 479 139 13 0 chr15 61086388 61086467 -24609287 - MER116 DNA Mariner 0 80 1 192 138 0 0 chr15 61086765 61086794 -24608960 - MIR3 SINE MIR -27 181 153 266 191 0 0 chr15 61086797 61086844 -24608910 + MER5B DNA MER1_type 4 50 -128 548 154 8 68 chr15 61086923 61086939 -24608815 - L1MC1 LINE L1 0 6333 6318 2020 76 76 56 chr15 61086939 61087242 -24608512 - AluY SINE Alu -2 309 1 548 154 8 68 chr15 61087242 61087342 -24608412 - L1MC1 LINE L1 -15 6318 6224 2204 79 14 24 chr15 61087632 61087963 -24607791 - AluY SINE Alu 0 311 1 351 328 17 8 chr15 61088153 61088272 -24607482 + MER5A DNA MER1_type 51 170 -19 215 326 0 43 chr15 61088308 61088400 -24607354 - MIR SINE MIR -110 152 65 294 147 0 160 chr15 61088835 61088910 -24606844 + MIR SINE MIR 119 181 -81 704 154 8 8 chr15 61089236 61089359 -24606395 - MIR SINE MIR -79 183 61 1544 207 60 88 chr15 61089433 61089500 -24606254 - MLT1F1 LTR MaLR 0 567 500 2385 85 0 0 chr15 61089500 61089821 -24605933 + AluY SINE Alu 1 321 0 1544 207 60 88 chr15 61089821 61090331 -24605423 - MLT1F1 LTR MaLR -67 500 3 234 280 60 0 chr15 61090414 61090514 -24605240 - L1MC/D LINE L1 -1971 5837 5732 284 321 84 46 chr15 61090530 61090661 -24605093 - L2 LINE L2 -1 3271 3136 21 0 0 0 chr15 61090963 61090984 -24604770 + AT_rich Low_complexity Low_complexity 1 21 0 1408 148 5 5 chr15 61091192 61091402 -24604352 - AluJb SINE Alu -102 210 1 250 248 55 0 chr15 61091413 61091522 -24604232 - L1ME4a LINE L1 -187 5934 5820 1090 135 119 10 chr15 61091522 61091715 -24604039 - AluJb SINE Alu -13 299 86 422 255 72 83 chr15 61091723 61091929 -24603825 - L1ME4a LINE L1 -303 5818 5611 2253 107 3 19 chr15 61091929 61092239 -24603515 - AluSg SINE Alu -5 305 1 422 255 72 83 chr15 61092239 61092524 -24603230 - L1ME4a LINE L1 -510 5611 5305 435 272 148 30 chr15 61092739 61092941 -24602813 + MIR SINE MIR 16 241 -21 198 103 0 0 chr15 61093458 61093487 -24602267 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 351 269 58 44 chr15 61093531 61093690 -24602064 + MIR3 SINE MIR 36 206 -2 2242 66 0 11 chr15 61093730 61094001 -24601753 - AluY SINE Alu -15 296 29 1785 62 0 0 chr15 61095760 61095968 -24599786 - AluY SINE Alu -102 209 2 338 45 0 0 chr15 61096157 61096201 -24599553 - AluY SINE Alu -10 290 247 697 294 59 5 chr15 61096673 61096894 -24598860 - MIR SINE MIR -20 242 10 287 343 0 0 chr15 61096934 61097033 -24598721 - MIR SINE MIR -71 137 39 2262 86 0 0 chr15 61097092 61097370 -24598384 + AluSc SINE Alu 24 301 -8 1011 183 50 0 chr15 61097872 61098074 -24597680 + MER20 DNA MER1_type 1 212 -7 1821 104 20 118 chr15 61098266 61098613 -24597141 - AluYb8 SINE Alu -5 313 1 668 187 181 13 chr15 61098714 61098869 -24596885 - MER5A DNA MER1_type -2 187 7 2010 138 3 0 chr15 61099104 61099427 -24596327 - AluSx SINE Alu 0 324 1 511 185 9 9 chr15 61099464 61099572 -24596182 - LTR33 LTR ERVL -32 489 382 520 282 51 13 chr15 61099930 61100086 -24595668 + MIR SINE MIR 13 174 -88 2507 57 0 0 chr15 61100515 61100812 -24594942 - AluY SINE Alu -14 297 1 756 173 62 6 chr15 61101475 61101637 -24594117 - MER20 DNA MER1_type -33 186 16 21 71 0 0 chr15 61103209 61103251 -24592503 + AT_rich Low_complexity Low_complexity 1 42 0 485 146 49 32 chr15 61103293 61103416 -24592338 + ORSL DNA AcHobo 138 262 -13 22 0 0 0 chr15 61104819 61104841 -24590913 + AT_rich Low_complexity Low_complexity 1 22 0 180 184 0 0 chr15 61105199 61105248 -24590506 + GA-rich Low_complexity Low_complexity 1 49 0 234 191 0 0 chr15 61105500 61105547 -24590207 + GA-rich Low_complexity Low_complexity 1 47 0 234 91 0 0 chr15 61107491 61107524 -24588230 + (CCG)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr15 61107570 61107593 -24588161 + GC_rich Low_complexity Low_complexity 1 23 0 256 265 0 24 chr15 61107908 61107991 -24587763 + CT-rich Low_complexity Low_complexity 3 83 0 231 208 65 0 chr15 61108166 61108243 -24587511 + C-rich Low_complexity Low_complexity 3 84 0 23 0 0 0 chr15 61108751 61108774 -24586980 + GC_rich Low_complexity Low_complexity 1 23 0 34 42 0 0 chr15 61109104 61109152 -24586602 + GC_rich Low_complexity Low_complexity 1 48 0 290 214 26 86 chr15 61109682 61109799 -24585955 + MIR SINE MIR 111 220 -42 314 203 17 0 chr15 61111936 61111995 -24583759 + L2 LINE L2 3213 3272 0 422 219 36 66 chr15 61112127 61112264 -24583490 - MIR SINE MIR -15 247 115 544 173 10 202 chr15 61112274 61112482 -24583272 + MER69 DNA AcHobo 2 2518 -8 211 154 0 96 chr15 61112490 61112542 -24583212 - MIR SINE MIR -165 97 51 429 254 148 59 chr15 61112739 61112907 -24582847 + L1ME4a LINE L1 5826 6026 -95 2218 103 3 10 chr15 61112907 61113207 -24582547 - AluSx SINE Alu -14 298 1 429 254 148 59 chr15 61113207 61113294 -24582460 + L1ME4a LINE L1 6026 6104 -17 241 315 75 14 chr15 61113719 61113865 -24581889 - MIR3 SINE MIR -5 203 49 2394 36 7 26 chr15 61114233 61114540 -24581214 - AluY SINE Alu -10 301 1 292 332 221 15 chr15 61114591 61114790 -24580964 - MIR SINE MIR -3 259 20 195 42 0 0 chr15 61114926 61114950 -24580804 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 246 32 0 0 chr15 61114949 61114980 -24580774 + (CA)n Simple_repeat Simple_repeat 1 31 0 327 216 68 0 chr15 61115082 61115156 -24580598 + MIR SINE MIR 86 164 -98 318 255 91 105 chr15 61115600 61115886 -24579868 + L1M4 LINE L1 1034 1315 -5227 490 238 46 20 chr15 61115983 61116134 -24579620 + MIR SINE MIR 13 167 -95 1592 155 25 18 chr15 61116210 61116487 -24579267 + AluJo SINE Alu 1 279 -33 419 365 30 49 chr15 61116572 61116939 -24578815 + L1 LINE L1 4751 5110 -1036 2130 88 30 0 chr15 61116969 61117264 -24578490 + AluSc SINE Alu 1 304 -5 1876 143 0 4 chr15 61117396 61117676 -24578078 + AluJo SINE Alu 1 279 -33 419 0 20 0 chr15 61117677 61117728 -24578026 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 204 314 0 0 chr15 61117848 61117918 -24577836 - MIR SINE MIR -70 192 123 216 309 0 0 chr15 61118017 61118081 -24577673 + (CA)n Simple_repeat Simple_repeat 1 64 0 988 246 37 78 chr15 61118100 61118474 -24577280 - MER115 DNA AcHobo -50 643 285 182 114 0 29 chr15 61118824 61118859 -24576895 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 457 232 106 7 chr15 61118870 61119012 -24576742 - L2 LINE L2 -1 3271 3116 297 325 43 62 chr15 61120984 61121193 -24574561 + MIR SINE MIR 38 242 -20 676 238 9 116 chr15 61121819 61121886 -24573868 - L1MC4 LINE L1 -6 8036 7963 1961 138 0 3 chr15 61121886 61122190 -24573564 - AluSx SINE Alu -9 303 1 676 238 9 116 chr15 61122190 61122458 -24573296 - L1MC4 LINE L1 -79 7963 7737 2219 82 26 0 chr15 61122928 61123233 -24572521 + AluSq SINE Alu 1 313 0 491 314 46 10 chr15 61123265 61123459 -24572295 + MIR SINE MIR 10 210 -52 222 248 130 150 chr15 61123529 61123836 -24571918 - L2 LINE L2 -147 3125 2825 290 244 104 47 chr15 61124423 61124586 -24571168 - MER5A DNA MER1_type -5 184 2 610 50 0 0 chr15 61124737 61124817 -24570937 + L1PA2 LINE L1 6074 6153 -2 270 0 0 0 chr15 61125599 61125629 -24570125 + (CA)n Simple_repeat Simple_repeat 2 31 0 1107 251 150 20 chr15 61126242 61126445 -24569309 + MLT1K LTR MaLR 194 369 -219 2079 123 0 10 chr15 61126445 61126754 -24569000 + AluSx SINE Alu 1 306 -6 1107 251 150 20 chr15 61126754 61126896 -24568858 + MLT1K LTR MaLR 369 584 -4 1709 270 75 42 chr15 61127062 61127164 -24568590 - MER115 DNA AcHobo 0 693 596 2126 106 0 20 chr15 61127164 61127467 -24568287 - AluSx SINE Alu -15 297 1 1709 270 75 42 chr15 61127467 61128034 -24567720 - MER115 DNA AcHobo -97 596 2 237 143 0 0 chr15 61128044 61128079 -24567675 + MER57B LTR ERV1 1 35 -399 237 91 0 0 chr15 61128085 61128118 -24567636 - MER57B LTR ERV1 -372 62 30 1782 47 98 20 chr15 61129067 61129322 -24566432 - AluY SINE Alu -3 308 34 2032 115 3 0 chr15 61129547 61129842 -24565912 - AluSq SINE Alu -17 296 1 2257 104 0 0 chr15 61130456 61130764 -24564990 - AluSg SINE Alu -2 308 1 297 0 0 0 chr15 61130978 61131011 -24564743 + (TG)n Simple_repeat Simple_repeat 2 34 0 425 271 80 13 chr15 61131011 61131151 -24564603 + L2 LINE L2 3160 3312 -1 2193 107 0 0 chr15 61131250 61131558 -24564196 + AluSq SINE Alu 1 308 -5 293 341 48 24 chr15 61131624 61131791 -24563963 + MER5A DNA MER1_type 1 182 -7 407 318 183 29 chr15 61131873 61132222 -24563532 - L1MC/D LINE L1 -2144 5664 5262 583 264 40 47 chr15 61132418 61132714 -24563040 - L2 LINE L2 -1035 2279 1986 996 168 0 54 chr15 61132817 61133020 -24562734 + AluJb SINE Alu 100 291 -21 1477 146 13 4 chr15 61133305 61133544 -24562210 - AluJb SINE Alu -13 299 59 763 192 16 0 chr15 61133562 61133683 -24562071 - MER1B DNA MER1_type -77 220 138 5615 163 78 19 chr15 61133683 61134716 -24561038 - MER52A LTR ERV1 0 1755 662 1103 187 96 30 chr15 61134708 61134938 -24560816 - MER52A LTR ERV1 -1510 245 1 * 458 182 148 0 chr15 61134938 61135024 -24560730 - MER1B DNA MER1_type -236 101 3 891 109 7 15 chr15 61135630 61135767 -24559987 + FRAM SINE Alu 22 157 -19 29 0 0 0 chr15 61135767 61135796 -24559958 + AT_rich Low_complexity Low_complexity 1 29 0 1383 218 78 16 chr15 61135985 61136306 -24559448 - MER58B DNA MER1_type 0 341 1 1711 155 55 0 chr15 61136351 61136642 -24559112 - AluJb SINE Alu -5 307 1 21 0 0 0 chr15 61136652 61136673 -24559081 + AT_rich Low_complexity Low_complexity 1 21 0 283 313 44 52 chr15 61137461 61137710 -24558044 - L1ME LINE L1 -241 5880 5634 2447 261 44 8 chr15 61137728 61138344 -24557410 + MER115 DNA AcHobo 56 693 0 243 318 121 35 chr15 61138348 61138546 -24557208 - L1ME LINE L1 -502 5619 5405 614 271 19 45 chr15 61138554 61138820 -24556934 - MIR SINE MIR 0 262 4 866 184 0 0 chr15 61138887 61139045 -24556709 - L1MD3 LINE L1 -8 7987 7830 2141 103 3 0 chr15 61139047 61139348 -24556406 + AluSg SINE Alu 3 304 -6 1100 114 6 6 chr15 61139925 61140091 -24555663 + AluSg SINE Alu 1 166 -144 390 280 42 28 chr15 61140191 61140334 -24555420 + MIR SINE MIR 118 262 0 2115 119 0 7 chr15 61141394 61141696 -24554058 - AluSg SINE Alu -10 300 1 259 288 144 15 chr15 61141992 61142124 -24553630 + MIR SINE MIR 43 191 -71 261 57 0 0 chr15 61142337 61142372 -24553382 + (GA)n Simple_repeat Simple_repeat 2 36 0 2614 192 76 111 chr15 61142373 61142622 -24553132 + L1MC3 LINE L1 6872 7128 -657 313 301 0 0 chr15 61142622 61142705 -24553049 + MLT1F1 LTR MaLR 35 117 -450 2614 192 76 111 chr15 61142705 61143320 -24552434 + L1MC3 LINE L1 7128 7785 0 1941 130 27 0 chr15 61144393 61144694 -24551060 + AluSx SINE Alu 1 309 -3 190 0 67 0 chr15 61144972 61145002 -24550752 + (TG)n Simple_repeat Simple_repeat 2 33 0 1970 117 7 13 chr15 61146225 61146532 -24549222 + AluSx SINE Alu 1 305 -7 309 26 0 0 chr15 61146548 61146586 -24549168 + (TG)n Simple_repeat Simple_repeat 1 38 0 939 90 119 0 chr15 61147785 61147919 -24547835 + AluSq/x SINE Alu 1 150 -162 704 274 61 34 chr15 61148079 61148375 -24547379 - L1ME LINE L1 -315 5806 5503 311 356 17 8 chr15 61148424 61148542 -24547212 + L1MC/D LINE L1 5593 5711 -2097 2359 57 0 31 chr15 61148870 61149187 -24546567 - AluY SINE Alu -4 307 1 329 295 21 11 chr15 61150460 61150555 -24545199 - MIR SINE MIR -77 131 36 544 244 55 8 chr15 61150644 61150771 -24544983 + MER69A DNA AcHobo 2 134 -43 1863 164 42 30 chr15 61151298 61151365 -24544389 - MLT1A1 LTR MaLR 0 365 300 2271 84 0 3 chr15 61151365 61151664 -24544090 - AluY SINE Alu -13 298 1 1863 164 42 30 chr15 61151664 61151931 -24543823 - MLT1A1 LTR MaLR -65 300 27 2915 191 50 20 chr15 61152072 61152750 -24543004 + Tigger7 DNA MER2_type 2 2587 0 467 271 0 0 chr15 61154099 61154221 -24541533 - L1MC4 LINE L1 0 8042 7921 227 211 26 51 chr15 61154244 61154400 -24541354 + (TTATA)n Simple_repeat Simple_repeat 1 152 0 379 234 48 8 chr15 61154534 61154658 -24541096 - L1MC4 LINE L1 -212 7830 7702 1474 123 5 0 chr15 61154658 61154878 -24540876 - AluSp SINE Alu -1 312 92 1540 148 2 161 chr15 61155044 61155422 -24540332 + MER7A DNA MER2_type 2 438 -2600 228 35 0 0 chr15 61155422 61155451 -24540303 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 2248 68 0 0 chr15 61155453 61155734 -24540020 - AluY SINE Alu -30 281 1 1540 148 2 161 chr15 61155734 61155763 -24539991 + MER7A DNA MER2_type 313 345 -1 1023 157 0 12 chr15 61155933 61156099 -24539655 - FAM SINE Alu -11 164 1 309 263 180 25 chr15 61156168 61156446 -24539308 - L1MC4a LINE L1 -1914 5894 5574 592 236 75 35 chr15 61157225 61157424 -24538330 + MLT1J LTR MaLR 305 511 0 376 234 113 24 chr15 61157429 61157553 -24538201 + MIR SINE MIR 70 204 -58 828 184 29 17 chr15 61157560 61157734 -24538020 + MER5B DNA MER1_type 1 176 -2 995 198 16 0 chr15 61159391 61159573 -24536181 - MER5A DNA MER1_type 0 189 5 270 286 31 20 chr15 61159632 61159730 -24536024 + MIR SINE MIR 20 118 -90 183 296 0 0 chr15 61159996 61160040 -24535714 - L2 LINE L2 -556 2758 2715 1200 264 129 67 chr15 61160048 61160334 -24535420 - MLT1K LTR MaLR 0 588 321 2162 119 0 0 chr15 61160334 61160646 -24535108 + AluSx SINE Alu 1 312 0 1200 264 129 67 chr15 61160646 61160870 -24534884 - MLT1K LTR MaLR -267 321 46 438 287 127 21 chr15 61162492 61162729 -24533025 - MIR SINE MIR 0 262 1 1942 149 0 0 chr15 61163626 61163908 -24531846 + AluJb SINE Alu 1 282 -30 214 39 0 0 chr15 61163908 61163934 -24531820 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 243 0 0 0 chr15 61164027 61164054 -24531700 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 930 110 0 8 chr15 61164693 61164820 -24530934 + AluSg/x SINE Alu 72 197 -113 1939 140 17 0 chr15 61167272 61167396 -24528358 + AluSx SINE Alu 1 121 -191 198 0 0 0 chr15 61167396 61167418 -24528336 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1939 140 17 0 chr15 61167418 61167586 -24528168 + AluSx SINE Alu 121 298 -14 23 33 0 0 chr15 61167702 61167732 -24528022 + AT_rich Low_complexity Low_complexity 1 30 0 1063 155 11 11 chr15 61167853 61168027 -24527727 - AluJo SINE Alu -19 293 120 342 156 18 119 chr15 61168030 61168104 -24527650 + L1MB5 LINE L1 6069 6130 -44 2077 89 0 4 chr15 61168104 61168363 -24527391 + AluSp SINE Alu 41 298 -15 342 156 18 119 chr15 61168363 61168397 -24527357 + L1MB5 LINE L1 6130 6166 -8 351 276 51 45 chr15 61168411 61168567 -24527187 + HAL1 LINE L1 1116 1272 -1235 226 241 93 28 chr15 61168805 61168913 -24526841 + HAL1 LINE L1 1450 1564 -943 612 205 92 0 chr15 61169604 61169746 -24526008 + L1MD2 LINE L1 6004 6088 -154 207 318 0 0 chr15 61169878 61169944 -24525810 + MIR SINE MIR 166 231 -31 243 204 19 0 chr15 61170060 61170114 -24525640 + L1MD2 LINE L1 6162 6216 -143 21 36 0 0 chr15 61170867 61170895 -24524859 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 61171560 61171581 -24524173 + AT_rich Low_complexity Low_complexity 1 21 0 786 296 165 27 chr15 61172516 61172922 -24522832 - L3 LINE CR1 -97 1480 1019 1990 131 6 31 chr15 61173046 61173366 -24522388 + AluSx SINE Alu 1 312 0 1460 193 57 0 chr15 61173883 61174147 -24521607 + AluJo SINE Alu 1 279 -33 302 338 188 12 chr15 61175171 61175511 -24520243 + L3 LINE CR1 352 751 -826 598 200 56 8 chr15 61175530 61175655 -24520099 - FLAM_A SINE Alu -2 131 1 1174 138 51 18 chr15 61175718 61175935 -24519819 + AluJb SINE Alu 77 300 -12 257 349 40 0 chr15 61175936 61176062 -24519692 + L3 LINE CR1 872 1002 -575 236 132 94 19 chr15 61176263 61176316 -24519438 + L2 LINE L2 3212 3268 -4 2175 119 3 0 chr15 61176375 61176677 -24519077 + AluSc SINE Alu 1 303 -6 2341 93 3 0 chr15 61176683 61176983 -24518771 + AluSp SINE Alu 1 301 -12 238 119 68 17 chr15 61177077 61177136 -24518618 + L1MA1 LINE L1 6241 6302 0 31 0 0 0 chr15 61177136 61177167 -24518587 + AT_rich Low_complexity Low_complexity 1 31 0 2289 87 0 13 chr15 61177211 61177520 -24518234 + AluSq SINE Alu 1 305 -8 1781 142 46 40 chr15 61179009 61179312 -24516442 + AluSx SINE Alu 1 305 -7 583 191 17 0 chr15 61179640 61179755 -24515999 - MER46A DNA MER2_type -2 234 118 2196 124 0 3 chr15 61179758 61180057 -24515697 + AluSg SINE Alu 1 298 -12 325 175 0 0 chr15 61180057 61180114 -24515640 - MER46A DNA MER2_type -178 58 2 305 376 139 19 chr15 61180344 61180719 -24515035 + L3 LINE CR1 35 454 -1123 528 336 164 27 chr15 61181113 61181563 -24514191 + L3 LINE CR1 976 1487 -90 348 239 90 60 chr15 61182121 61182288 -24513466 - MIR SINE MIR -27 235 64 1894 152 0 10 chr15 61182764 61183053 -24512701 + AluJb SINE Alu 2 287 -25 560 159 333 0 chr15 61184597 61184735 -24511019 + MER3 DNA MER1_type 1 184 -25 * 580 213 123 0 chr15 61184719 61184841 -24510913 + MER3 DNA MER1_type 73 209 0 668 264 174 0 chr15 61185129 61185330 -24510424 - MIR SINE MIR -25 237 2 254 289 0 0 chr15 61186023 61186075 -24509679 - Tigger8 DNA MER2_type -4 662 611 279 235 26 52 chr15 61186167 61186282 -24509472 - L1ME3A LINE L1 -15 6155 6044 561 337 40 15 chr15 61186402 61186728 -24509026 + L2 LINE L2 2422 2755 -559 513 328 121 41 chr15 61186784 61187294 -24508460 + L2 LINE L2 2736 3271 -1 1200 116 23 0 chr15 61188944 61189116 -24506638 - AluSq SINE Alu -133 180 5 1556 223 162 37 chr15 61189269 61189941 -24505813 - HAL1 LINE L1 -604 1903 1148 521 339 54 35 chr15 61190228 61190541 -24505213 - L3 LINE CR1 -104 1473 1155 583 270 23 11 chr15 61191182 61191356 -24504398 - MIR SINE MIR -10 252 77 219 353 71 0 chr15 61191371 61191456 -24504298 - MIR SINE MIR -164 98 8 262 271 84 9 chr15 61191458 61191565 -24504189 + MER117 DNA MER1_type 5 119 -78 1773 154 45 0 chr15 61192531 61192823 -24502931 + AluJo SINE Alu 3 307 -5 429 238 50 0 chr15 61193932 61194033 -24501721 + MER103 DNA DNA 11 116 -50 311 318 121 47 chr15 61194524 61194864 -24500890 - L2 LINE L2 -1199 2115 1751 2050 149 0 3 chr15 61195507 61195802 -24499952 + AluSx SINE Alu 1 294 -18 2198 120 0 13 chr15 61195871 61196187 -24499567 + AluSx SINE Alu 1 312 0 345 314 107 32 chr15 61197183 61197222 -24498532 + L3 LINE CR1 814 849 -728 1939 149 3 7 chr15 61197222 61197517 -24498237 + AluSg SINE Alu 1 294 -16 345 314 107 32 chr15 61197517 61197729 -24498025 + L3 LINE CR1 849 1084 -493 2525 47 0 7 chr15 61197786 61198084 -24497670 + AluY SINE Alu 1 296 -15 1558 210 88 0 chr15 61199323 61199482 -24496272 + L1MD2 LINE L1 5961 6105 -254 315 0 0 0 chr15 61199482 61199517 -24496237 + (CA)n Simple_repeat Simple_repeat 2 36 0 1558 210 88 0 chr15 61199517 61199710 -24496044 + L1MD2 LINE L1 6105 6344 -15 219 69 0 0 chr15 61200538 61200567 -24495187 + (CA)n Simple_repeat Simple_repeat 2 30 0 239 327 9 64 chr15 61200624 61200734 -24495020 + L3 LINE CR1 1469 1572 -5 1535 170 4 8 chr15 61201152 61201411 -24494343 + AluJb SINE Alu 1 258 -54 234 81 0 0 chr15 61201783 61201820 -24493934 + (T)n Simple_repeat Simple_repeat 1 37 0 250 229 0 0 chr15 61201875 61201923 -24493831 - L2 LINE L2 -1 3312 3265 241 328 109 8 chr15 61202607 61202726 -24493028 + MIR3 SINE MIR 15 145 -63 1644 117 0 17 chr15 61202877 61203116 -24492638 + AluSq SINE Alu 1 235 -78 2407 97 0 0 chr15 61203744 61204044 -24491710 - AluSx SINE Alu -12 300 1 231 188 0 0 chr15 61205421 61205469 -24490285 + GA-rich Low_complexity Low_complexity 1 48 0 361 247 29 86 chr15 61206124 61206298 -24489456 + MLT1L LTR MaLR 16 179 -436 228 35 0 0 chr15 61206406 61206435 -24489319 + (CA)n Simple_repeat Simple_repeat 2 30 0 1669 249 69 10 chr15 61206436 61207042 -24488712 + L1ME3A LINE L1 5122 5763 -399 247 226 0 0 chr15 61207048 61207101 -24488653 + L1ME3A LINE L1 6028 6080 -90 623 288 64 26 chr15 61207558 61207791 -24487963 - MIR SINE MIR 0 262 21 490 315 14 0 chr15 61207835 61207978 -24487776 + MIR3 SINE MIR 35 179 -29 204 323 0 0 chr15 61209569 61209631 -24486123 + L2 LINE L2 3252 3313 0 185 0 0 39 chr15 61211301 61211312 -24484442 + (TAA)n Simple_repeat Simple_repeat 2 12 -14 1992 96 3 40 chr15 61211312 61211613 -24484141 + AluSx SINE Alu 1 290 -22 185 0 0 39 chr15 61211613 61211627 -24484127 + (TAA)n Simple_repeat Simple_repeat 12 26 0 318 326 33 39 chr15 61211771 61211952 -24483802 + L2 LINE L2 1729 1908 -1406 2076 105 0 24 chr15 61212026 61212349 -24483405 - AluSx SINE Alu 0 312 1 238 293 111 0 chr15 61212461 61212560 -24483194 + L2 LINE L2 2028 2137 -1177 231 136 91 0 chr15 61212560 61212604 -24483150 + MER66A LTR ERV1 1 48 -430 288 309 94 35 chr15 61212645 61212846 -24482908 + L2 LINE L2 2811 3023 -249 1722 169 80 69 chr15 61212850 61213134 -24482620 - MLT1C LTR MaLR 0 467 175 2538 46 3 7 chr15 61213134 61213438 -24482316 - AluY SINE Alu -8 303 1 1722 169 80 69 chr15 61213438 61213615 -24482139 - MLT1C LTR MaLR -292 175 1 3602 128 45 67 chr15 61214065 61214712 -24481042 + MER51A LTR ERV1 2 634 0 360 0 0 0 chr15 61215079 61215119 -24480635 + (T)n Simple_repeat Simple_repeat 1 40 0 2255 108 0 10 chr15 61215600 61215914 -24479840 + AluSx SINE Alu 1 311 -1 2342 90 0 7 chr15 61216532 61216832 -24478922 + AluSx SINE Alu 1 298 -14 285 293 0 12 chr15 61217087 61217169 -24478585 + MIR3 SINE MIR 102 182 -26 1759 207 34 85 chr15 61217177 61217709 -24478045 - MLT1D LTR MaLR 0 505 1 294 359 51 0 chr15 61217863 61218019 -24477735 - MIR SINE MIR -7 255 92 1058 90 0 0 chr15 61218019 61218153 -24477601 + AluSq/x SINE Alu 1 134 -179 32 0 0 0 chr15 61218153 61218185 -24477569 + AT_rich Low_complexity Low_complexity 1 32 0 216 258 15 76 chr15 61218186 61218252 -24477502 - MIR SINE MIR -181 81 20 354 297 157 22 chr15 61218454 61218639 -24477115 + MIR SINE MIR 34 243 -19 1849 175 27 6 chr15 61219358 61219696 -24476058 - L1MA5 LINE L1 -35 6265 5921 2354 76 21 0 chr15 61221218 61221507 -24474247 - AluY SINE Alu -16 295 1 2581 203 65 17 chr15 61222545 61222660 -24473094 - MLT1F1 LTR MaLR -3 564 456 2176 120 0 7 chr15 61222660 61222961 -24472793 + AluSx SINE Alu 1 299 -13 2581 203 65 17 chr15 61222961 61223383 -24472371 - MLT1F1 LTR MaLR -111 456 1 187 186 23 23 chr15 61224274 61224317 -24471437 + MIR SINE MIR 85 127 -81 241 348 36 0 chr15 61224339 61224451 -24471303 - MIR SINE MIR -17 245 130 865 128 0 0 chr15 61224503 61224620 -24471134 + AluJo/FLAM SINE Alu 2 118 -184 2347 110 0 0 chr15 61224621 61224930 -24470824 - AluSx SINE Alu -3 309 1 680 247 61 48 chr15 61224968 61225199 -24470555 + MIR SINE MIR 2 235 -27 238 320 135 46 chr15 61226872 61226981 -24468773 + L2 LINE L2 1800 1898 -1416 1991 144 3 10 chr15 61226981 61227286 -24468468 - AluJb SINE Alu -9 303 1 238 320 135 46 chr15 61227286 61227745 -24468009 + L2 LINE L2 1898 2419 -895 334 333 69 32 chr15 61227755 61227944 -24467810 - MIR SINE MIR 0 262 67 2808 99 8 8 chr15 61227965 61228329 -24467425 + THE1B LTR MaLR 1 364 0 602 321 71 57 chr15 61228329 61229132 -24466622 + L2 LINE L2 2433 3259 -13 219 69 0 0 chr15 61229132 61229161 -24466593 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 201 382 78 0 chr15 61229412 61229514 -24466240 + MIR SINE MIR 23 132 -76 284 339 9 0 chr15 61230759 61230874 -24464880 + MIR3 SINE MIR 90 205 -3 191 133 0 0 chr15 61231033 61231063 -24464691 - L2 LINE L2 -2 3270 3241 2257 120 0 0 chr15 61231665 61231973 -24463781 + AluSg SINE Alu 1 308 -2 189 74 0 0 chr15 61232292 61232319 -24463435 + (CA)n Simple_repeat Simple_repeat 2 28 0 229 216 20 0 chr15 61232398 61232449 -24463305 + LTR30 LTR ERV1 1 52 -670 1387 101 115 5 chr15 61232449 61232658 -24463096 + LTR12 LTR ERV1 53 284 -430 285 273 11 0 chr15 61232658 61232746 -24463008 + LTR30 LTR ERV1 552 640 -82 820 107 0 9 chr15 61232748 61232860 -24462894 + LTR12 LTR ERV1 479 589 -125 2226 108 0 0 chr15 61232958 61233255 -24462499 + AluY SINE Alu 1 297 -14 2211 85 0 0 chr15 61233638 61233935 -24461819 + AluY SINE Alu 9 305 0 1359 98 0 0 chr15 61233939 61234113 -24461641 + AluSg/x SINE Alu 123 296 -14 352 293 202 31 chr15 61234113 61234430 -24461324 + HAL1b LINE L1 404 774 -574 1201 211 11 39 chr15 61234444 61234723 -24461031 + AluJo SINE Alu 7 277 -35 186 43 0 0 chr15 61234734 61234757 -24460997 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2377 86 0 3 chr15 61235070 61235374 -24460380 + AluSc SINE Alu 1 303 -6 3282 192 13 30 chr15 61235526 61236585 -24459169 + L1M4 LINE L1 4597 5646 -538 2127 186 16 16 chr15 61236585 61236950 -24458804 - MLT1A1 LTR MaLR 0 365 1 3282 192 13 30 chr15 61236950 61237117 -24458637 + L1M4 LINE L1 5646 5814 -370 298 157 0 0 chr15 61237220 61237271 -24458483 - FLAM_A SINE Alu 0 133 83 1539 276 91 25 chr15 61237279 61237435 -24458319 - L1ME3A LINE L1 -233 5937 5793 201 74 0 0 chr15 61237435 61237462 -24458292 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1539 276 91 25 chr15 61237462 61237512 -24458242 - L1ME3A LINE L1 -377 5793 5748 1947 162 10 0 chr15 61237512 61237821 -24457933 + AluSq SINE Alu 1 312 -1 1539 276 91 25 chr15 61237821 61238533 -24457221 - L1ME3A LINE L1 -422 5748 4950 2142 109 7 0 chr15 61238590 61238875 -24456879 - AluSc SINE Alu -22 287 1 532 281 63 39 chr15 61239116 61239401 -24456353 + L1ME LINE L1 5400 5691 -430 232 214 29 14 chr15 61239477 61239547 -24456207 + L1ME4a LINE L1 6051 6121 0 755 204 139 19 chr15 61241081 61241297 -24454457 - MIR SINE MIR 0 262 21 1012 243 107 38 chr15 61241318 61241664 -24454090 + Charlie7 DNA MER1_type 177 546 -2066 * 1700 246 94 41 chr15 61241646 61242284 -24453470 + Charlie7 DNA MER1_type 1665 2354 -258 1888 213 171 4 chr15 61242284 61242745 -24453009 + MLT1F LTR MaLR 1 538 -4 1700 246 94 41 chr15 61242745 61242895 -24452859 + Charlie7 DNA MER1_type 2354 2495 -117 812 252 16 10 chr15 61243040 61243255 -24452499 + MIR SINE MIR 25 245 -17 27 29 0 0 chr15 61244245 61244279 -24451475 + AT_rich Low_complexity Low_complexity 1 34 0 1645 187 13 23 chr15 61244288 61244598 -24451156 + AluJb SINE Alu 1 307 -5 1824 141 22 0 chr15 61245552 61245855 -24449899 + AluSx SINE Alu 1 309 0 21 0 0 0 chr15 61246607 61246628 -24449126 + AT_rich Low_complexity Low_complexity 1 21 0 2376 81 0 0 chr15 61246907 61247204 -24448550 + AluY SINE Alu 1 297 -14 540 122 54 0 chr15 61247292 61247366 -24448388 + AluS SINE Alu 7 84 -229 231 424 0 0 chr15 61249487 61249572 -24446182 - L2 LINE L2 -84 3188 3104 2788 29 0 0 chr15 61249731 61250038 -24445716 - AluYa5 SINE Alu -4 307 1 342 256 98 55 chr15 61250963 61251217 -24444537 + L1M4 LINE L1 4763 5027 -1119 1034 170 69 11 chr15 61251308 61251496 -24444258 + L1PA16 LINE L1 5959 6157 -9 186 260 50 90 chr15 61252318 61252418 -24443336 - MIR3 SINE MIR -29 179 84 228 67 0 0 chr15 61252943 61252973 -24442781 + (GA)n Simple_repeat Simple_repeat 1 30 0 522 121 0 103 chr15 61254506 61254569 -24441185 + Charlie4 DNA MER1_type 1798 1845 -116 2298 119 0 0 chr15 61254569 61254879 -24440875 - AluSx SINE Alu -2 310 1 522 121 0 103 chr15 61254879 61254931 -24440823 + Charlie4 DNA MER1_type 1845 1901 -60 278 259 22 79 chr15 61255237 61255376 -24440378 - MIR SINE MIR 0 262 132 853 154 0 14 chr15 61255455 61255598 -24440156 + AluJo SINE Alu 1 141 -171 1734 125 3 80 chr15 61255598 61255911 -24439843 + AluJo SINE Alu 1 289 -23 1191 227 67 32 chr15 61255919 61256528 -24439226 - L2 LINE L2 -80 3233 2608 1885 115 32 4 chr15 61256528 61256806 -24438948 + AluSx SINE Alu 1 286 -26 302 281 83 119 chr15 61257749 61258219 -24437535 + L1M2 LINE L1 748 1200 -5649 2043 112 49 0 chr15 61258408 61258713 -24437041 + Tigger2 DNA MER2_type 2389 2708 -10 1049 157 23 42 chr15 61258713 61258834 -24436920 + MER45B DNA AcHobo 767 889 -692 183 80 0 0 chr15 61258834 61258859 -24436895 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2233 132 0 0 chr15 61258869 61259180 -24436574 + AluSx SINE Alu 1 311 -1 1049 157 23 42 chr15 61259180 61259263 -24436491 + MER45B DNA AcHobo 898 978 -62 337 286 50 29 chr15 61260076 61260216 -24435538 + MIR3 SINE MIR 45 187 -21 260 255 297 0 chr15 61260468 61260613 -24435141 - MIR SINE MIR -13 249 62 267 272 48 8 chr15 61260848 61260973 -24434781 - MIR3 SINE MIR -19 189 60 1091 224 84 30 chr15 61261158 61261457 -24434297 + MLT1B LTR MaLR 76 390 0 283 169 24 36 chr15 61261457 61261540 -24434214 - L1M LINE L1 -2414 5371 5290 2224 128 0 0 chr15 61261623 61261935 -24433819 + AluSx SINE Alu 1 312 0 2336 78 10 10 chr15 61262489 61262798 -24432956 - AluY SINE Alu -2 309 1 1383 135 23 9 chr15 61262798 61263013 -24432741 - L1MC1 LINE L1 -8 6325 6108 314 304 96 30 chr15 61263387 61263522 -24432232 + L2 LINE L2 2925 3068 -204 34 55 0 0 chr15 61264496 61264551 -24431203 + AT_rich Low_complexity Low_complexity 1 55 0 323 288 97 99 chr15 61268212 61268698 -24427056 + L1M2 LINE L1 798 1282 -5567 1889 287 86 35 chr15 61269277 61270094 -24425660 + HAL1 LINE L1 1 775 -1732 2122 112 0 14 chr15 61270094 61270388 -24425366 - AluSx SINE Alu -22 290 1 1889 287 86 35 chr15 61270388 61270553 -24425201 + HAL1 LINE L1 775 930 -1577 1304 162 39 26 chr15 61270553 61270782 -24424972 + MER46A DNA MER2_type 1 232 -4 1889 287 86 35 chr15 61270782 61270891 -24424863 + HAL1 LINE L1 930 1149 -1358 752 178 82 7 chr15 61270895 61271030 -24424724 + AluJb SINE Alu 2 146 -166 340 54 18 18 chr15 61271211 61271267 -24424487 + (CAGG)n Simple_repeat Simple_repeat 3 58 0 2382 91 0 0 chr15 61272079 61272377 -24423377 - AluSg SINE Alu -12 298 1 289 288 131 38 chr15 61272423 61272583 -24423171 - MIR SINE MIR -5 257 83 200 346 59 0 chr15 61272758 61272859 -24422895 - MIR SINE MIR -57 151 45 252 274 259 7 chr15 61273028 61273163 -24422591 + L2 LINE L2 2898 3066 -206 447 252 38 23 chr15 61274385 61274516 -24421238 - MER94 DNA DNA 0 134 2 200 267 53 40 chr15 61274774 61274849 -24420905 + L2 LINE L2 3234 3309 -4 312 365 143 18 chr15 61275573 61275915 -24419839 - L2 LINE L2 -2753 561 177 402 256 88 50 chr15 61276111 61276271 -24419483 + MIR SINE MIR 49 214 -48 301 312 106 7 chr15 61276824 61276965 -24418789 + Charlie8 DNA MER1_type 4 158 -2259 24 32 0 0 chr15 61277140 61277171 -24418583 + AT_rich Low_complexity Low_complexity 1 31 0 583 235 50 0 chr15 61277267 61277386 -24418368 + FLAM_C SINE Alu 2 126 -17 237 186 23 12 chr15 61277391 61277477 -24418277 + (TA)n Simple_repeat Simple_repeat 1 87 0 25 0 0 0 chr15 61277483 61277508 -24418246 + AT_rich Low_complexity Low_complexity 1 25 0 2291 94 0 0 chr15 61279034 61279333 -24416421 + AluSx SINE Alu 1 299 -13 225 182 0 0 chr15 61279479 61279523 -24416231 + L1MB7 LINE L1 6132 6175 -9 182 309 72 66 chr15 61279742 61279894 -24415860 + L3 LINE CR1 488 640 -937 205 290 0 29 chr15 61279922 61279991 -24415763 + L3 LINE CR1 889 955 -622 2235 117 3 7 chr15 61280064 61280371 -24415383 + AluSg SINE Alu 1 306 -4 495 187 70 21 chr15 61280557 61280702 -24415052 - MIR SINE MIR -4 258 104 414 200 70 0 chr15 61280751 61280851 -24414903 - MER103 DNA DNA -15 151 45 989 141 6 57 chr15 61280852 61281029 -24414725 - AluJb SINE Alu -8 304 137 248 311 81 56 chr15 61281380 61281541 -24414213 + MIR SINE MIR 46 210 -52 315 185 103 82 chr15 61283360 61283517 -24412237 + MIR SINE MIR 1 150 -63 186 250 14 179 chr15 61284143 61284283 -24411471 - MER5B DNA MER1_type 0 178 62 198 103 0 0 chr15 61284293 61284322 -24411432 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 723 165 76 32 chr15 61284323 61284481 -24411273 - FRAM SINE Alu -1 165 1 180 336 29 29 chr15 61284538 61284642 -24411112 - MIR SINE MIR -61 147 44 437 343 101 19 chr15 61285415 61285782 -24409972 + L2 LINE L2 2140 2536 -778 2816 231 45 5 chr15 61285900 61286701 -24409053 - L1M4 LINE L1 -2845 3301 2469 548 157 0 0 chr15 61286744 61286833 -24408921 - L1MCc LINE L1 -5514 909 821 1214 291 28 14 chr15 61287097 61287534 -24408220 - L1MCc LINE L1 -5949 474 32 522 238 33 0 chr15 61287593 61287744 -24408010 - L1MEc LINE L1 -2653 3562 3407 643 258 197 44 chr15 61287757 61288365 -24407389 - L1MEc LINE L1 -4097 2299 1599 8630 190 54 17 chr15 61288419 61290370 -24405384 - L1MEc LINE L1 -1193 5022 2999 1972 100 4 4 chr15 61290374 61290635 -24405119 - AluSg SINE Alu -13 297 37 260 239 97 52 chr15 61291208 61291363 -24404391 + L1MC/D LINE L1 5269 5430 -2378 731 204 0 0 chr15 61292174 61292311 -24403443 + MER63 DNA MER1_type 899 1035 -27 233 318 28 34 chr15 61292980 61293159 -24402595 - L1MEc LINE L1 -3238 2977 2800 310 323 106 40 chr15 61293656 61294034 -24401720 - L1MEc LINE L1 -3875 2521 2119 460 269 28 48 chr15 61294557 61294577 -24401177 - L2 LINE L2 0 3313 3294 1835 185 48 9 chr15 61294577 61294912 -24400842 - MER7A DNA MER2_type 0 346 1 460 269 28 48 chr15 61294912 61295036 -24400718 - L2 LINE L2 -19 3294 3172 2231 95 20 3 chr15 61295448 61295744 -24400010 + AluSx SINE Alu 1 301 -11 326 279 66 49 chr15 61295775 61296001 -24399753 - HAL1 LINE L1 -1340 1167 938 311 237 41 0 chr15 61296380 61296477 -24399277 + (TA)n Simple_repeat Simple_repeat 2 102 0 2356 101 3 3 chr15 61297733 61298041 -24397713 + AluSq SINE Alu 1 308 -5 1375 179 5 0 chr15 61298218 61298442 -24397312 - AluSx SINE Alu -86 226 2 1070 194 52 48 chr15 61298444 61298712 -24397042 - Charlie4 DNA MER1_type -1692 269 1 324 237 0 43 chr15 61298745 61298838 -24396916 - MIR SINE MIR -77 131 43 * 343 270 119 38 chr15 61298803 61298962 -24396792 + MIR3 SINE MIR 6 177 -31 305 259 27 88 chr15 61299513 61299660 -24396094 + MER5A DNA MER1_type 52 189 0 335 242 39 90 chr15 61299666 61299856 -24395898 - MER5B DNA MER1_type -11 167 1 208 171 49 0 chr15 61299856 61299896 -24395858 + MIR3 SINE MIR 153 194 -14 739 284 105 43 chr15 61299970 61300340 -24395414 + Charlie8 DNA MER1_type 38 430 -1987 277 206 73 0 chr15 61300345 61300413 -24395341 + Charlie8 DNA MER1_type 1345 1417 -1000 1974 160 0 6 chr15 61300496 61300809 -24394945 + AluJb SINE Alu 1 311 -1 297 321 64 18 chr15 61301128 61301237 -24394517 + MIR SINE MIR 23 136 -72 565 224 13 19 chr15 61301393 61301405 -24394349 - L1MCa LINE L1 -3025 3401 3390 2119 130 10 0 chr15 61301405 61301713 -24394041 - AluSq SINE Alu -2 311 1 565 224 13 19 chr15 61301713 61301856 -24393898 - L1MCa LINE L1 -3036 3390 3247 288 77 0 0 chr15 61301858 61301897 -24393857 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 489 78 56 0 chr15 61301895 61301985 -24393769 + GA-rich Low_complexity Low_complexity 2 96 0 3862 155 50 40 chr15 61301987 61304033 -24391721 - L1MCa LINE L1 -3276 3150 990 1003 232 62 41 chr15 61304045 61304161 -24391593 - L1MC4a LINE L1 -1148 6637 6525 3572 78 13 0 chr15 61304161 61304608 -24391146 - L1PA10 LINE L1 -10 6158 5706 1003 232 62 41 chr15 61304608 61304861 -24390893 - L1MC4a LINE L1 -1260 6525 6250 285 153 82 209 chr15 61304881 61304989 -24390765 - L1ME1 LINE L1 -15 6151 6077 3300 11 0 22 chr15 61304989 61305355 -24390399 - L1PA4 LINE L1 -4 6151 5794 285 153 82 209 chr15 61305355 61305442 -24390312 - L1ME1 LINE L1 -89 6077 5981 1167 209 121 9 chr15 61305837 61306323 -24389431 + MER20B DNA MER1_type 224 781 -2 395 272 15 21 chr15 61306324 61306492 -24389262 + L1ME4a LINE L1 5649 5817 -345 24 0 0 0 chr15 61306566 61306590 -24389164 + AT_rich Low_complexity Low_complexity 1 24 0 456 255 65 19 chr15 61306952 61307168 -24388586 + L1ME4a LINE L1 5895 6120 -1 2393 74 3 0 chr15 61307197 61307495 -24388259 + AluY SINE Alu 1 299 -12 1088 135 6 12 chr15 61307514 61307677 -24388077 - U1 snRNA snRNA -2 163 2 1325 101 268 4 chr15 61308888 61309116 -24386638 + AluSq SINE Alu 1 288 -15 2322 255 129 12 chr15 61309352 61310535 -24385219 + L1ME3A LINE L1 4850 6169 -1 1697 154 32 45 chr15 61312152 61312464 -24383290 + AluJo SINE Alu 1 308 -4 1031 190 50 15 chr15 61312815 61313015 -24382739 - AluJo SINE Alu -20 292 86 195 42 0 0 chr15 61313623 61313647 -24382107 + (A)n Simple_repeat Simple_repeat 1 24 0 184 376 0 21 chr15 61314575 61314668 -24381086 - MIR SINE MIR -164 98 8 2189 116 0 3 chr15 61314739 61315033 -24380721 - AluSg SINE Alu -15 295 3 2197 77 3 48 chr15 61315290 61315602 -24380152 - AluSg SINE Alu -12 298 1 713 286 125 23 chr15 61315605 61316073 -24379681 - L1ME3A LINE L1 -230 5940 5406 219 36 0 0 chr15 61317464 61317492 -24378262 + (CA)n Simple_repeat Simple_repeat 2 29 0 361 250 174 7 chr15 61318403 61318547 -24377207 + MIR SINE MIR 94 261 -1 269 289 87 58 chr15 61318805 61319151 -24376603 + L1M4 LINE L1 3634 3989 -2157 229 130 0 0 chr15 61319194 61319240 -24376514 - LTR66 LTR ERVL -171 439 394 228 139 0 0 chr15 61319204 61319247 -24376507 + LTR66 LTR ERVL 394 436 -174 * 226 250 50 60 chr15 61319275 61319375 -24376379 + L1M4 LINE L1 4061 4159 -1987 376 123 12 49 chr15 61319458 61319539 -24376215 + L1MB2 LINE L1 6093 6170 -1 2213 90 7 7 chr15 61319646 61319945 -24375809 - AluSq SINE Alu -14 299 1 21 36 0 0 chr15 61320028 61320056 -24375698 + AT_rich Low_complexity Low_complexity 1 28 0 718 241 13 0 chr15 61320249 61320407 -24375347 + MER3 DNA MER1_type 50 209 0 342 322 31 35 chr15 61320484 61320711 -24375043 + L1ME3A LINE L1 3725 3950 -2196 402 39 0 0 chr15 61321226 61321278 -24374476 + (CA)n Simple_repeat Simple_repeat 1 52 0 1440 274 77 25 chr15 61322119 61322504 -24373250 + MLT1G1 LTR MaLR 1 464 -131 2126 133 0 0 chr15 61322504 61322804 -24372950 + AluSq SINE Alu 1 300 -13 1440 274 77 25 chr15 61322804 61322944 -24372810 + MLT1G1 LTR MaLR 464 595 0 2218 111 0 3 chr15 61323169 61323467 -24372287 + AluSg SINE Alu 1 297 -13 445 43 0 29 chr15 61323474 61323544 -24372210 + (CA)n Simple_repeat Simple_repeat 2 69 0 373 284 92 50 chr15 61324263 61324404 -24371350 - MIR3 SINE MIR -31 177 31 360 246 224 35 chr15 61324829 61325061 -24370693 + MLT1J LTR MaLR 230 505 -6 1317 281 85 39 chr15 61327948 61329526 -24366228 + L1ME3A LINE L1 4283 5946 -224 2275 223 48 31 chr15 61329591 61330174 -24365580 + MLT1E LTR MaLR 1 593 0 22 56 0 0 chr15 61330994 61331030 -24364724 + AT_rich Low_complexity Low_complexity 1 36 0 443 241 101 68 chr15 61333659 61333937 -24361817 - L3 LINE CR1 -136 1441 1155 357 290 61 8 chr15 61334078 61334209 -24361545 - MIR SINE MIR -26 236 99 192 200 0 0 chr15 61334778 61334823 -24360931 + (CTCA)n Simple_repeat Simple_repeat 3 47 0 231 235 20 0 chr15 61334847 61334898 -24360856 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 257 243 29 0 chr15 61335184 61335254 -24360500 + MER113 DNA MER1_type? 15 86 -435 250 337 61 41 chr15 61335458 61335654 -24360100 - L2 LINE L2 -565 2749 2550 21 0 0 0 chr15 61336898 61336919 -24358835 + AT_rich Low_complexity Low_complexity 1 21 0 2546 255 87 40 chr15 61336994 61337146 -24358608 - L2 LINE L2 -563 2751 2608 1588 104 0 0 chr15 61337146 61337358 -24358396 - AluSg/x SINE Alu -12 300 89 2546 255 87 40 chr15 61337358 61338111 -24357643 - L2 LINE L2 -706 2608 1803 257 271 155 36 chr15 61340579 61340830 -24354924 + L1ME4a LINE L1 5521 5801 -320 509 249 202 0 chr15 61340835 61341008 -24354746 - MIR SINE MIR -52 210 3 262 241 65 19 chr15 61341013 61341121 -24354633 + L1ME4a LINE L1 5810 5922 -199 209 33 33 0 chr15 61341575 61341605 -24354149 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 475 229 255 10 chr15 61341977 61342169 -24353585 - MIR SINE MIR -2 260 22 345 291 133 37 chr15 61343521 61343875 -24351879 - L1M4 LINE L1 -3632 2514 2127 315 247 0 37 chr15 61345332 61345413 -24350341 - MIR3 SINE MIR -31 177 100 426 359 90 14 chr15 61346119 61346331 -24349423 + MIR SINE MIR 21 248 -14 4774 203 41 30 chr15 61346538 61347881 -24347873 + L1MD1 LINE L1 3813 5189 -1053 2120 101 14 10 chr15 61347881 61348205 -24347549 + AluSx SINE Alu 1 312 0 4774 203 41 30 chr15 61348205 61349270 -24346484 + L1MD1 LINE L1 5189 6241 -1 595 296 56 89 chr15 61349828 61350223 -24345531 + L2 LINE L2 2891 3272 0 23 33 0 0 chr15 61350527 61350557 -24345197 + AT_rich Low_complexity Low_complexity 1 30 0 1957 164 3 0 chr15 61350909 61351214 -24344540 + AluSx SINE Alu 1 306 -6 483 271 72 36 chr15 61351764 61351930 -24343824 - MIR SINE MIR -2 260 89 267 236 0 0 chr15 61352039 61352094 -24343660 - L2 LINE L2 -8 3264 3210 349 207 146 0 chr15 61352149 61352231 -24343523 - MER81 DNA DNA 0 114 21 671 263 143 56 chr15 61352698 61353843 -24341911 - L1MC/D LINE L1 -513 5657 4479 708 216 18 18 chr15 61353849 61354020 -24341734 - FRAM SINE Alu -5 171 1 1860 278 72 43 chr15 61354165 61355132 -24340622 - L1MC/D LINE L1 -1945 4201 3207 21 0 0 0 chr15 61355142 61355163 -24340591 + AT_rich Low_complexity Low_complexity 1 21 0 1166 110 60 37 chr15 61355319 61355537 -24340217 - L1MC2 LINE L1 -8 6336 6114 350 241 103 7 chr15 61355548 61355693 -24340061 - L1MC/D LINE L1 -2925 3221 3063 1847 158 27 14 chr15 61356023 61356320 -24339434 + AluJb SINE Alu 1 301 -11 474 260 49 0 chr15 61357757 61357880 -24337874 + L2 LINE L2 3185 3313 0 367 294 181 6 chr15 61358356 61358516 -24337238 - MIR SINE MIR -64 198 11 231 323 0 0 chr15 61358599 61358664 -24337090 + MER117 DNA MER1_type 4 68 -129 22 35 0 0 chr15 61360452 61360481 -24335273 + GC_rich Low_complexity Low_complexity 1 29 0 2250 75 31 3 chr15 61361839 61362131 -24333623 - AluSc SINE Alu -9 300 1 333 266 21 11 chr15 61362292 61362386 -24333368 - LTR67 LTR ERVL 0 557 463 2310 89 0 7 chr15 61362908 61363212 -24332542 - AluY SINE Alu -9 302 1 617 354 75 45 chr15 61363790 61363809 -24331945 + L2 LINE L2 2589 2606 -666 1648 83 13 18 chr15 61363809 61364037 -24331717 + MER30 DNA MER1_type 4 230 0 617 354 75 45 chr15 61364037 61364667 -24331087 + L2 LINE L2 2606 3270 -2 1793 120 14 27 chr15 61364839 61365189 -24330565 - MER4A LTR ERV1 0 664 261 596 152 0 10 chr15 61365189 61365288 -24330466 - MER4A LTR ERV1 -566 98 1 363 335 66 20 chr15 61365556 61365708 -24330046 - MER5A DNA MER1_type -3 186 28 270 266 58 77 chr15 61365706 61365913 -24329841 - L2 LINE L2 -23 3290 3088 * 22 0 0 0 chr15 61365930 61365952 -24329802 + AT_rich Low_complexity Low_complexity 1 22 0 1563 105 5 0 chr15 61566388 61566597 -24129157 + AluSg/x SINE Alu 89 298 -14 642 263 120 32 chr15 61566969 61567277 -24128477 - MER102b DNA MER1_type -3 338 4 181 302 189 9 chr15 61567307 61567413 -24128341 - MIR SINE MIR -119 143 19 2255 88 16 38 chr15 61568085 61568402 -24127352 - AluSg SINE Alu 0 310 1 1451 187 40 18 chr15 61569196 61569474 -24126280 - AluJo SINE Alu -22 290 7 210 37 0 0 chr15 61570491 61570518 -24125236 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 268 383 25 25 chr15 61570604 61570766 -24124988 - MIR3 SINE MIR -41 167 6 270 306 58 8 chr15 61571214 61571335 -24124419 - L2 LINE L2 -291 2981 2855 497 258 8 0 chr15 61571337 61571465 -24124289 + L1ME3 LINE L1 5611 5739 -423 618 215 0 0 chr15 61571480 61571601 -24124153 + FLAM_A SINE Alu 18 138 -4 1684 230 81 22 chr15 61571619 61571880 -24123874 - MER68 LTR ERV1 -12 550 249 198 0 0 0 chr15 61571880 61571902 -24123852 + (GA)n Simple_repeat Simple_repeat 2 23 0 1684 230 81 22 chr15 61571902 61572097 -24123657 - MER68 LTR ERV1 -313 249 67 815 251 77 40 chr15 61572139 61572489 -24123265 + L1ME3 LINE L1 5754 6116 -46 249 226 0 19 chr15 61572579 61572632 -24123122 - L2 LINE L2 -498 2816 2765 5318 166 117 39 chr15 61572635 61573984 -24121770 + Charlie1a DNA MER1_type 1 1455 0 444 213 28 0 chr15 61575180 61575288 -24120466 - L1ME3A LINE L1 -12 6158 6048 215 269 15 30 chr15 61575764 61575831 -24119923 + MIR3 SINE MIR 111 176 -32 1883 215 108 18 chr15 61575882 61576371 -24119383 + MLT1F LTR MaLR 10 542 0 760 246 60 20 chr15 61576474 61576673 -24119081 - MER63A DNA MER1_type -1 209 3 890 279 45 29 chr15 61576979 61577356 -24118398 - L1ME3A LINE L1 -231 5939 5557 1240 211 95 16 chr15 61577363 61577733 -24118021 + L1ME3 LINE L1 5690 6088 -74 2421 60 0 0 chr15 61577748 61578073 -24117681 + AluY SINE Alu 1 325 0 621 261 51 35 chr15 61578138 61578504 -24117250 - L1ME3A LINE L1 -683 5487 5177 2313 73 7 0 chr15 61578504 61578790 -24116964 + AluSg SINE Alu 9 296 -14 621 261 51 35 chr15 61578790 61579012 -24116742 - L1ME3A LINE L1 -993 5177 4960 2476 72 0 13 chr15 61579023 61579328 -24116426 - AluY SINE Alu -10 301 1 192 250 0 0 chr15 61579759 61579799 -24115955 + MIR SINE MIR 67 106 -102 592 245 25 18 chr15 61580043 61580242 -24115512 + MIR SINE MIR 15 262 0 458 234 160 29 chr15 61580447 61580622 -24115132 + Charlie8 DNA MER1_type 1 198 -2219 224 245 147 20 chr15 61581905 61582007 -24113747 - MIR SINE MIR -61 147 33 24 67 0 0 chr15 61582091 61582136 -24113618 + GC_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr15 61582764 61582806 -24112948 + GC_rich Low_complexity Low_complexity 1 42 0 2182 98 0 10 chr15 61584282 61584598 -24111156 - AluSg SINE Alu 0 310 1 2103 164 8 3 chr15 61584786 61585159 -24110595 - HERVH LTR ERV1 -4199 3514 3140 * 14003 119 8 40 chr15 61585138 61588033 -24107721 - HERVH LTR ERV1 -4718 2995 1 2652 98 128 2 chr15 61588035 61588433 -24107321 - LTR7 LTR ERV1 -2 448 1 667 283 178 38 chr15 61588433 61588928 -24106826 - L2 LINE L2 -850 2464 1901 408 253 71 28 chr15 61589031 61589213 -24106541 - L1MC4 LINE L1 -13 8029 7840 2089 142 0 0 chr15 61589649 61589956 -24105798 + AluSx SINE Alu 1 307 0 2594 86 0 0 chr15 61590111 61590424 -24105330 + AluSp SINE Alu 1 313 0 220 211 18 0 chr15 61592326 61592383 -24103371 + (TG)n Simple_repeat Simple_repeat 1 58 0 216 279 29 7 chr15 61592500 61592640 -24103114 + (TG)n Simple_repeat Simple_repeat 1 143 0 2516 72 0 10 chr15 61593472 61593779 -24101975 - AluY SINE Alu -7 304 1 314 306 153 9 chr15 61594044 61594155 -24101599 + MER91A DNA MER1_type 13 139 -57 2359 94 0 10 chr15 61594235 61594533 -24101221 - AluSx SINE Alu -17 295 1 1225 103 132 0 chr15 61594591 61594795 -24100959 + MLT1B LTR MaLR 1 231 -159 2785 223 117 25 chr15 61594807 61595430 -24100324 - MER21B LTR ERV1 -2 861 152 2177 128 3 10 chr15 61595430 61595743 -24100011 + AluSx SINE Alu 1 311 -1 2785 223 117 25 chr15 61595743 61595891 -24099863 - MER21B LTR ERV1 -711 152 19 360 127 14 56 chr15 61595923 61595994 -24099760 - MER21B LTR ERV1 -795 68 1 840 112 16 0 chr15 61595999 61596124 -24099630 + MLT1B LTR MaLR 233 359 -31 1341 167 0 0 chr15 61596124 61596334 -24099420 - AluJo SINE Alu -8 304 95 1940 105 0 0 chr15 61596436 61596683 -24099071 + AluSq SINE Alu 49 295 -18 24 32 0 0 chr15 61596722 61596753 -24099001 + GC_rich Low_complexity Low_complexity 1 31 0 303 303 46 79 chr15 61596811 61597052 -24098702 - L1M4 LINE L1 -1340 4806 4574 27 0 0 0 chr15 61598307 61598334 -24097420 + AT_rich Low_complexity Low_complexity 1 27 0 5912 50 1 69 chr15 61598558 61598990 -24096764 + L1PA5 LINE L1 5387 5738 -416 2060 108 0 23 chr15 61598990 61599295 -24096459 + AluY SINE Alu 12 309 -2 5912 50 1 69 chr15 61599295 61599685 -24096069 + L1PA5 LINE L1 5738 6153 -1 1060 190 50 12 chr15 61599701 61599943 -24095811 - MLT1C LTR MaLR -25 442 192 960 95 8 0 chr15 61599992 61600118 -24095636 - AluJb SINE Alu -185 127 1 880 173 23 6 chr15 61600129 61600302 -24095452 - MLT1C LTR MaLR -291 176 1 1624 147 30 15 chr15 61601814 61602101 -24093653 - AluJb SINE Alu 0 303 13 213 211 115 0 chr15 61602323 61602375 -24093379 - L2 LINE L2 0 3313 3256 723 219 104 16 chr15 61602565 61602757 -24092997 - MER58A DNA MER1_type -15 209 1 206 357 0 48 chr15 61602788 61602914 -24092840 - L3 LINE CR1 -132 1445 1326 2227 105 3 3 chr15 61602918 61603213 -24092541 + AluSg SINE Alu 1 295 -15 607 150 10 0 chr15 61603215 61603315 -24092439 + FAM SINE Alu 74 174 -11 513 284 309 12 chr15 61603695 61604019 -24091735 - L3 LINE CR1 -692 885 466 189 0 0 0 chr15 61604027 61604048 -24091706 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 209 283 208 0 chr15 61604165 61604285 -24091469 - L3 LINE CR1 -1102 475 331 306 276 120 57 chr15 61604369 61604561 -24091193 - L3 LINE CR1 -1261 316 113 3720 114 63 2 chr15 61604564 61605150 -24090604 + Tigger1 DNA MER2_type 1 622 -1796 1172 148 128 10 chr15 61605150 61605346 -24090408 + AluJo SINE Alu 1 219 -93 8561 101 20 24 chr15 61605346 61606586 -24089168 + Tigger1 DNA MER2_type 613 1849 -569 2575 77 0 0 chr15 61606586 61606896 -24088858 + AluY SINE Alu 2 311 0 8561 101 20 24 chr15 61606896 61607007 -24088747 + Tigger1 DNA MER2_type 1849 1959 -459 996 113 0 8 chr15 61607007 61607140 -24088614 - FLAM_C SINE Alu -11 132 1 421 73 0 44 chr15 61607140 61607208 -24088546 + Tigger1 DNA MER2_type 2245 2309 -109 860 162 0 34 chr15 61607208 61607356 -24088398 - FRAM SINE Alu -14 162 20 682 135 27 0 chr15 61607356 61607467 -24088287 + Tigger1 DNA MER2_type 2305 2418 0 2497 75 3 3 chr15 61607592 61607898 -24087856 + AluSx SINE Alu 1 306 -6 192 163 0 0 chr15 61609482 61609525 -24086229 + C-rich Low_complexity Low_complexity 3 45 0 183 261 113 17 chr15 61610446 61610525 -24085229 - MIR SINE MIR -58 204 109 2224 113 7 10 chr15 61610525 61610827 -24084927 + AluSq SINE Alu 1 301 -12 183 261 113 17 chr15 61610827 61610862 -24084892 - MIR SINE MIR -153 109 79 572 273 136 67 chr15 61611065 61611559 -24084195 - L2 LINE L2 -47 3225 2715 1209 204 18 5 chr15 61614165 61614386 -24081368 + MER58A DNA MER1_type 1 224 0 209 163 41 0 chr15 61614770 61614819 -24080935 + GA-rich Low_complexity Low_complexity 1 51 0 367 317 75 19 chr15 61615237 61615398 -24080356 - L2 LINE L2 0 3272 3103 492 157 11 0 chr15 61616212 61616276 -24079478 + AluSg/x SINE Alu 218 304 -5 22 0 0 0 chr15 61616276 61616298 -24079456 + AT_rich Low_complexity Low_complexity 1 22 0 1606 230 77 18 chr15 61616343 61616734 -24079020 - MLT1E LTR MaLR 0 593 180 6915 101 29 23 chr15 61616748 61617442 -24078312 - L1MA3 LINE L1 0 6305 5616 2381 98 0 0 chr15 61617442 61617748 -24078006 - AluSx SINE Alu -6 306 1 6915 101 29 23 chr15 61617748 61617759 -24077995 - L1MA3 LINE L1 -689 5616 5607 2157 101 7 14 chr15 61617759 61618056 -24077698 - AluSq SINE Alu -18 295 1 6915 101 29 23 chr15 61618056 61618204 -24077550 - L1MA3 LINE L1 -698 5607 5461 2225 104 3 10 chr15 61618204 61618512 -24077242 - AluSx SINE Alu -6 306 1 6915 101 29 23 chr15 61618512 61618869 -24076885 - L1MA3 LINE L1 -844 5461 5081 605 109 0 43 chr15 61618969 61619061 -24076693 - AluS SINE Alu -223 90 3 2304 106 0 0 chr15 61619074 61619367 -24076387 - AluSc SINE Alu -16 293 1 1254 112 46 0 chr15 61619367 61619564 -24076190 - L1MA3 LINE L1 -1815 4331 4126 851 166 43 53 chr15 61619564 61619751 -24076003 - MLT1E LTR MaLR -408 185 1 306 303 83 14 chr15 61620992 61621137 -24074617 + MIR SINE MIR 106 260 -2 279 0 0 0 chr15 61623456 61623487 -24072267 + (TG)n Simple_repeat Simple_repeat 1 31 0 410 315 93 28 chr15 61627053 61627141 -24068613 - L2 LINE L2 -825 2489 2408 1335 208 60 33 chr15 61627141 61627473 -24068281 - MER58B DNA MER1_type 0 341 1 410 315 93 28 chr15 61627473 61627812 -24067942 - L2 LINE L2 -906 2408 2034 827 201 40 0 chr15 61628351 61628500 -24067254 + FAM SINE Alu 13 167 -18 2249 103 3 22 chr15 61629280 61629591 -24066163 - AluSg SINE Alu -5 305 1 847 159 8 0 chr15 61629595 61629727 -24066027 - AluSq/x SINE Alu -179 133 1 278 191 0 0 chr15 61631727 61631774 -24063980 - LTR67 LTR ERVL -462 95 49 241 206 63 48 chr15 61631919 61631982 -24063772 - MER5A DNA MER1_type -65 124 61 2022 116 29 4 chr15 61631997 61632299 -24063455 + AluSg SINE Alu 1 309 0 322 91 164 0 chr15 61632299 61632354 -24063400 - MER41B LTR ERV1 -90 545 482 464 230 122 27 chr15 61632543 61632691 -24063063 + MER103 DNA DNA 4 165 -1 206 310 117 16 chr15 61633148 61633305 -24062449 - MIR SINE MIR -63 145 17 418 177 13 0 chr15 61634781 61634860 -24060894 - MER116 DNA Mariner 0 80 1 2139 120 17 3 chr15 61635226 61635527 -24060227 + AluSx SINE Alu 1 305 -7 2215 110 0 0 chr15 61636707 61636998 -24058756 + AluSq SINE Alu 1 291 -22 25 0 0 0 chr15 61637113 61637138 -24058616 + AT_rich Low_complexity Low_complexity 1 25 0 1714 152 3 53 chr15 61637551 61637854 -24057900 + AluJo SINE Alu 1 288 -24 1708 142 20 61 chr15 61637903 61638098 -24057656 + MER46B DNA MER2_type 32 84 -2647 2429 87 0 3 chr15 61638098 61638407 -24057347 + AluY SINE Alu 1 308 -3 1708 142 20 61 chr15 61638407 61638555 -24057199 + MER46B DNA MER2_type 84 236 0 318 261 92 39 chr15 61638777 61638907 -24056847 - MIR SINE MIR -2 260 124 1529 153 0 4 chr15 61639750 61639986 -24055768 - AluJb SINE Alu -6 306 72 688 154 0 9 chr15 61640151 61640261 -24055493 + FLAM_A SINE Alu 8 116 -26 262 282 29 0 chr15 61640777 61640880 -24054874 - L2 LINE L2 -815 2499 2394 357 158 79 13 chr15 61641165 61641241 -24054513 - MIR SINE MIR -116 146 66 374 117 104 0 chr15 61641248 61641325 -24054429 - L1MB7 LINE L1 0 6184 6100 9054 118 49 34 chr15 61641326 61642815 -24052939 - Tigger2 DNA MER2_type 0 2718 1208 826 165 281 0 chr15 61643452 61643694 -24052060 - MER33 DNA MER1_type -14 310 1 2341 107 0 0 chr15 61643917 61644226 -24051528 - AluSc SINE Alu 0 309 1 2374 105 0 3 chr15 61644230 61644543 -24051211 - AluSx SINE Alu 0 312 1 1324 186 17 13 chr15 61644647 61644884 -24050870 - MER8 DNA MER2_type 0 239 2 1413 167 59 31 chr15 61645259 61645546 -24050208 + AluJb SINE Alu 1 295 -17 373 246 200 37 chr15 61646362 61646577 -24049177 + L1ME4a LINE L1 5649 5898 -223 2175 106 10 3 chr15 61646692 61646984 -24048770 - AluSx SINE Alu -18 294 1 1815 133 37 11 chr15 61647685 61647956 -24047798 + AluSx SINE Alu 1 278 -34 399 212 30 30 chr15 61648579 61648678 -24047076 - L1ME3A LINE L1 -13 6157 6059 2344 81 14 0 chr15 61648743 61649040 -24046714 - AluSp SINE Alu -12 301 1 758 136 0 0 chr15 61649044 61649162 -24046592 - FLAM_C SINE Alu -9 134 17 2580 224 96 33 chr15 61649384 61649566 -24046188 - L1ME3A LINE L1 -2 6168 5999 1699 172 14 24 chr15 61649566 61649862 -24045892 - AluJo SINE Alu -17 295 3 2580 224 96 33 chr15 61649862 61649940 -24045814 - L1ME3A LINE L1 -171 5999 5927 2055 115 0 58 chr15 61649940 61650253 -24045501 - AluSg SINE Alu -15 295 1 2580 224 96 33 chr15 61650253 61651710 -24044044 - L1ME3A LINE L1 -243 5927 4342 1006 192 16 0 chr15 61652094 61652276 -24043478 + L1ME1 LINE L1 5452 5636 -530 336 187 80 9 chr15 61652347 61652368 -24043386 - L1MC2 LINE L1 -3 7747 7729 2737 3 0 0 chr15 61652368 61652655 -24043099 + AluYa5 SINE Alu 22 308 -3 336 187 80 9 chr15 61652655 61652975 -24042779 - L1MC2 LINE L1 -21 7729 6165 1386 220 63 29 chr15 61652976 61653354 -24042400 + L1ME1 LINE L1 5645 6035 -131 636 184 41 20 chr15 61653386 61653533 -24042221 + L1MA10 LINE L1 6177 6326 -8 1761 77 0 14 chr15 61653620 61653842 -24041912 + AluSq SINE Alu 84 302 -11 391 306 156 40 chr15 61654070 61654665 -24041089 - L1ME3A LINE L1 -1 6169 5506 414 287 96 0 chr15 61655215 61655372 -24040382 + MIR SINE MIR 21 192 -70 288 0 0 0 chr15 61655499 61655531 -24040223 + (CA)n Simple_repeat Simple_repeat 2 33 0 777 189 46 13 chr15 61656057 61656210 -24039544 + AluJo SINE Alu 119 276 -36 412 247 103 22 chr15 61656226 61656502 -24039252 + GSAT Satellite centromeric 1 298 -45 234 172 0 17 chr15 61656518 61656576 -24039178 + GSATX Satellite centromeric 56 112 -106 1557 161 100 0 chr15 61656721 61657000 -24038754 + AluJb SINE Alu 2 308 -4 911 262 60 87 chr15 61657022 61657498 -24038256 - L1ME3A LINE L1 -2196 3950 3463 2103 115 4 0 chr15 61657498 61657825 -24037929 - AluSg SINE Alu 0 328 1 911 262 60 87 chr15 61657825 61657859 -24037895 - L1ME3A LINE L1 -2683 3463 3430 2298 114 3 0 chr15 61657859 61658165 -24037589 - AluSx SINE Alu -5 307 1 911 262 60 87 chr15 61658165 61658297 -24037457 - L1ME3A LINE L1 -2716 3430 3323 195 114 0 0 chr15 61658299 61658334 -24037420 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 823 64 0 0 chr15 61658334 61658428 -24037326 - AluY SINE Alu -194 117 24 1266 155 0 36 chr15 61658686 61658905 -24036849 - AluJo SINE Alu -101 211 1 4299 217 155 41 chr15 61658908 61659392 -24036362 - L1M4 LINE L1 -1586 5058 4631 2418 89 0 3 chr15 61659392 61659705 -24036049 - AluSx SINE Alu 0 312 1 4299 217 155 41 chr15 61659705 61660302 -24035452 - L1M4 LINE L1 -2013 4631 4104 2219 123 3 0 chr15 61660302 61660602 -24035152 - AluSp SINE Alu -12 301 1 4299 217 155 41 chr15 61660602 61660867 -24034887 - L1M4 LINE L1 -2540 4104 3871 1980 133 3 7 chr15 61660867 61661152 -24034602 - AluJb SINE Alu -17 295 12 4299 217 155 41 chr15 61661152 61661595 -24034159 - L1M4 LINE L1 -2773 3871 3062 2994 219 71 45 chr15 61661627 61662469 -24033285 + L1M4 LINE L1 1 864 -5678 1424 219 37 73 chr15 61662455 61662769 -24032985 - L1M4 LINE L1 -3572 3072 2748 * 2316 105 3 3 chr15 61662769 61663075 -24032679 - AluSx SINE Alu -6 306 1 1424 219 37 73 chr15 61663075 61663396 -24032358 - L1M4 LINE L1 -3896 2748 2417 778 187 0 15 chr15 61663396 61663530 -24032224 - FLAM_C SINE Alu -1 132 1 1424 219 37 73 chr15 61663530 61663544 -24032210 - L1M4 LINE L1 -4227 2417 2404 2400 69 0 16 chr15 61663544 61663850 -24031904 - AluY SINE Alu -10 301 1 1424 219 37 73 chr15 61663850 61663988 -24031766 - L1M4 LINE L1 -4240 2404 2317 2227 107 3 0 chr15 61663988 61664279 -24031475 - AluSp SINE Alu -21 292 1 1424 219 37 73 chr15 61664279 61664328 -24031426 - L1M4 LINE L1 -4327 2317 2268 1025 148 154 67 chr15 61664348 61664646 -24031108 - L1MA9 LINE L1 0 6312 5989 5717 212 91 35 chr15 61664655 61665520 -24030234 - L1M4 LINE L1 -4489 2157 1342 2366 89 3 13 chr15 61665520 61665834 -24029920 - AluY SINE Alu 0 311 1 622 203 39 0 chr15 61665836 61665964 -24029790 - AluJo/FLAM SINE Alu -169 133 1 5717 212 91 35 chr15 61665964 61667152 -24028602 - L1M4 LINE L1 -5304 1342 1 2290 110 3 0 chr15 61667168 61667478 -24028276 - AluSx SINE Alu -1 311 1 578 270 55 18 chr15 61667495 61667658 -24028096 - AluJo SINE Alu -24 288 120 1648 257 90 27 chr15 61667670 61668456 -24027298 - L1MEd LINE L1 -3132 2997 2162 2068 107 4 4 chr15 61668497 61668778 -24026976 - AluSq SINE Alu -30 283 3 266 264 82 66 chr15 61669203 61669385 -24026369 - L1MEd LINE L1 -4320 1990 1806 304 286 117 15 chr15 61669525 61669721 -24026033 - L1MEd LINE L1 -4552 1577 1362 294 269 101 27 chr15 61669751 61670100 -24025654 - L1MEd LINE L1 -4869 1250 940 180 342 13 0 chr15 61670577 61670656 -24025098 + MIR SINE MIR 147 226 -36 317 47 0 0 chr15 61670949 61670992 -24024762 - L1MA1 LINE L1 0 6302 6260 2267 125 0 0 chr15 61671098 61671403 -24024351 - AluSx SINE Alu -7 305 1 2194 114 17 0 chr15 61671405 61671694 -24024060 - AluSx SINE Alu -18 294 1 258 175 0 18 chr15 61672055 61672112 -24023642 - AluJb SINE Alu -8 294 239 3372 86 23 13 chr15 61672113 61672588 -24023166 + LTR15 LTR ERV1 1 480 -13 1329 193 0 8 chr15 61672606 61672845 -24022909 - AluJb SINE Alu -75 237 1 2007 119 31 3 chr15 61673168 61673462 -24022292 - AluSx SINE Alu -10 302 1 1511 238 89 39 chr15 61673762 61674383 -24021371 - L1MC5 LINE L1 -434 7527 6876 2084 201 90 40 chr15 61674387 61674696 -24021058 + L1MB8 LINE L1 5445 5737 -441 13990 123 49 25 chr15 61674696 61675492 -24020262 + Tigger1 DNA MER2_type 1 777 -1641 290 25 0 25 chr15 61675492 61675532 -24020222 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 13990 123 49 25 chr15 61675532 61676876 -24018878 + Tigger1 DNA MER2_type 777 2088 -330 2167 97 0 45 chr15 61676876 61677187 -24018567 - AluSc SINE Alu -12 297 1 13990 123 49 25 chr15 61677187 61677296 -24018458 + Tigger1 DNA MER2_type 2088 2193 -225 1785 163 38 0 chr15 61677296 61677584 -24018170 - AluSx SINE Alu -13 299 1 13990 123 49 25 chr15 61677584 61677692 -24018062 + Tigger1 DNA MER2_type 2193 2416 -2 2084 201 90 40 chr15 61677692 61677748 -24018006 + L1MB8 LINE L1 5737 5789 -389 1937 154 7 3 chr15 61677748 61678047 -24017707 + AluJb SINE Alu 1 300 -12 2084 201 90 40 chr15 61678047 61678211 -24017543 + L1MB8 LINE L1 5789 6002 -176 4880 121 29 45 chr15 61678226 61678323 -24017431 + L1PA13 LINE L1 5328 5425 -738 2115 125 0 16 chr15 61678323 61678635 -24017119 + AluSx SINE Alu 1 307 -5 4880 121 29 45 chr15 61678635 61679373 -24016381 + L1PA13 LINE L1 5425 6149 -14 293 167 0 0 chr15 61679410 61679452 -24016302 + 5S rRNA rRNA 1 42 -79 414 202 96 0 chr15 61679454 61679558 -24016196 + L1MB8 LINE L1 6021 6134 -44 1860 79 30 11 chr15 61679904 61680170 -24015584 + L1PA5 LINE L1 5884 6154 0 234 0 0 0 chr15 61680236 61680262 -24015492 + (TA)n Simple_repeat Simple_repeat 1 26 0 2303 98 10 0 chr15 61680278 61680575 -24015179 + AluSp SINE Alu 1 300 -13 1061 148 0 0 chr15 61680575 61680724 -24015030 + AluSg/x SINE Alu 132 280 -30 456 144 192 0 chr15 61680732 61680836 -24014918 + L1MC4 LINE L1 7917 8040 -2 1253 222 21 17 chr15 61680937 61681225 -24014529 - AluJb SINE Alu -20 292 4 182 268 107 0 chr15 61681495 61681551 -24014203 - L2 LINE L2 -3 3269 3208 220 217 152 22 chr15 61682568 61682660 -24013094 - MIR SINE MIR -55 153 50 1646 143 14 24 chr15 61682699 61682986 -24012768 - AluJo SINE Alu -23 289 6 235 177 129 0 chr15 61683275 61683337 -24012417 + L1MA5 LINE L1 5965 6034 -266 814 222 6 23 chr15 61683358 61683534 -24012220 + AluJo SINE Alu 2 174 -138 694 199 61 15 chr15 61683577 61683773 -24011981 + L1MC4 LINE L1 7710 7914 -128 750 189 9 147 chr15 61684012 61684257 -24011497 + MLT2D LTR ERVL 237 414 0 1064 268 69 57 chr15 61684262 61685157 -24010597 - L1MCb LINE L1 -4854 1191 614 1357 190 70 7 chr15 61685371 61685655 -24010099 - AluJo SINE Alu -6 306 5 180 0 0 0 chr15 61685986 61686006 -24009748 + (TTG)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 61686035 61686055 -24009699 + (TTG)n Simple_repeat Simple_repeat 1 20 0 189 171 0 0 chr15 61686084 61686119 -24009635 + (CTG)n Simple_repeat Simple_repeat 1 35 0 277 313 45 15 chr15 61686203 61686337 -24009417 + MIR SINE MIR 63 200 -62 1104 120 0 0 chr15 61686467 61686617 -24009137 - AluSq/x SINE Alu -162 150 1 590 165 19 0 chr15 61686663 61686766 -24008988 - Charlie1 DNA MER1_type -1231 1530 1426 2235 106 7 0 chr15 61687171 61687474 -24008280 + AluY SINE Alu 1 305 -6 198 174 0 0 chr15 61687616 61687662 -24008092 + T-rich Low_complexity Low_complexity 1 46 0 840 215 14 51 chr15 61687821 61688035 -24007719 + MIR SINE MIR 28 233 -29 988 238 96 30 chr15 61688064 61688459 -24007295 - HAL1 LINE L1 -877 1630 1210 22 35 0 0 chr15 61688479 61688508 -24007246 + AT_rich Low_complexity Low_complexity 1 29 0 443 270 77 104 chr15 61688575 61689077 -24006677 - MLT1H LTR MaLR 0 549 19 346 244 114 34 chr15 61689095 61689271 -24006483 - HAL1 LINE L1 -1437 1070 881 370 78 16 16 chr15 61689937 61690001 -24005753 + (CAGG)n Simple_repeat Simple_repeat 3 66 0 1531 109 0 5 chr15 61690841 61691043 -24004711 - AluSq SINE Alu -32 281 81 297 119 0 0 chr15 61691043 61691085 -24004669 - AluSq SINE Alu -260 42 1 194 295 160 39 chr15 61691131 61691287 -24004467 - MIR SINE MIR -5 257 83 211 350 40 0 chr15 61691476 61691576 -24004178 - MIR SINE MIR -60 148 45 210 266 281 8 chr15 61691750 61691878 -24003876 + L2 LINE L2 2904 3066 -206 536 220 30 23 chr15 61693103 61693235 -24002519 - MER94 DNA DNA 0 134 2 204 255 0 0 chr15 61694955 61695002 -24000752 + T-rich Low_complexity Low_complexity 1 47 0 224 274 0 20 chr15 61695260 61695311 -24000443 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2271 107 20 0 chr15 61695521 61695819 -23999935 - AluSp SINE Alu -9 304 1 1579 188 3 40 chr15 61695884 61696232 -23999522 + AluJb SINE Alu 1 337 0 412 306 63 72 chr15 61696371 61696816 -23998938 - HAL1 LINE L1 -2044 463 23 1024 185 42 28 chr15 61697182 61697398 -23998356 + MER20 DNA MER1_type 1 219 0 9054 36 1 0 chr15 61697879 61699723 -23996031 - L1PA4 LINE L1 -3 6152 4308 318 225 14 0 chr15 61701204 61701275 -23994479 - MER63 DNA MER1_type -9 1053 982 * 392 273 27 0 chr15 61701270 61701380 -23994374 - MER63 DNA MER1_type -321 741 3 330 180 0 0 chr15 61701419 61701488 -23994266 - MLT2A1 LTR ERVL 0 515 452 2792 104 17 24 chr15 61701523 61701935 -23993819 - MLT2A1 LTR ERVL -35 409 1 324 236 0 0 chr15 61703096 61703185 -23992569 + (TG)n Simple_repeat Simple_repeat 2 90 0 2130 121 0 0 chr15 61703193 61703483 -23992271 - AluSg SINE Alu -20 290 1 264 252 117 53 chr15 61703496 61703702 -23992052 + L1ME4a LINE L1 5903 6121 0 1389 256 131 19 chr15 61704523 61705051 -23990703 + MLT1E LTR MaLR 3 589 -4 2208 97 6 13 chr15 61705426 61705737 -23990017 + AluSc SINE Alu 1 309 0 2376 97 3 3 chr15 61705914 61706225 -23989529 - AluSp SINE Alu -2 311 1 23 33 0 0 chr15 61706471 61706501 -23989253 + AT_rich Low_complexity Low_complexity 1 30 0 2296 170 120 97 chr15 61706635 61706784 -23988970 + Charlie1 DNA MER1_type 1426 1570 -1191 2010 145 0 7 chr15 61706784 61707081 -23988673 + AluSx SINE Alu 5 299 -13 2296 170 120 97 chr15 61707081 61707139 -23988615 + Charlie1 DNA MER1_type 1570 1625 -1136 1891 154 0 10 chr15 61707139 61707431 -23988323 + AluJb SINE Alu 13 301 -11 2296 170 120 97 chr15 61707431 61707999 -23987755 + Charlie1 DNA MER1_type 1625 2220 -541 1319 157 0 10 chr15 61708003 61708207 -23987547 + AluJb SINE Alu 87 288 -24 868 209 146 65 chr15 61708237 61708606 -23987148 + Charlie1 DNA MER1_type 2363 2761 0 2325 98 17 3 chr15 61709081 61709378 -23986376 + AluSx SINE Alu 1 301 -11 201 147 0 0 chr15 61709513 61709547 -23986207 + (CA)n Simple_repeat Simple_repeat 2 35 0 2228 123 3 0 chr15 61710692 61710994 -23984760 + AluSg SINE Alu 1 303 -7 2018 92 14 38 chr15 61712297 61712589 -23983165 + AluSx SINE Alu 3 287 -25 1198 96 6 0 chr15 61712589 61712745 -23983009 - AluSq SINE Alu -156 157 1 432 0 0 0 chr15 61713839 61713887 -23981867 + (TG)n Simple_repeat Simple_repeat 2 49 0 224 282 70 14 chr15 61714188 61714259 -23981495 + MIR SINE MIR 11 85 -177 183 271 17 0 chr15 61715079 61715138 -23980616 + MIR SINE MIR 85 144 -64 225 94 0 0 chr15 61717914 61717946 -23977808 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 61719437 61719459 -23976295 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 61720011 61720040 -23975714 + AT_rich Low_complexity Low_complexity 1 29 0 237 311 0 0 chr15 61722316 61722451 -23973303 + A-rich Low_complexity Low_complexity 1 135 0 272 301 173 0 chr15 61723235 61723368 -23972386 - MIR SINE MIR -6 256 101 1945 138 6 31 chr15 61723423 61723741 -23972013 - AluSx SINE Alu -1 311 2 191 217 4 0 chr15 61724277 61724322 -23971432 - MIR SINE MIR -62 146 100 290 343 0 6 chr15 61724596 61724774 -23970980 + CT-rich Low_complexity Low_complexity 2 178 0 233 241 37 0 chr15 61725586 61725640 -23970114 - MIR SINE MIR -59 149 94 337 294 59 25 chr15 61725972 61726091 -23969663 - L2 LINE L2 -3 3310 3188 247 326 138 0 chr15 61726109 61726247 -23969507 - MIR3 SINE MIR -21 187 31 240 249 47 150 chr15 61727212 61727425 -23968329 - MIR SINE MIR -58 150 2 2188 112 0 0 chr15 61730039 61730351 -23965403 + AluSx SINE Alu 1 312 0 901 195 7 0 chr15 61730687 61730841 -23964913 + MER5A DNA MER1_type 2 156 -33 1484 204 4 4 chr15 61731582 61731856 -23963898 + AluJo SINE Alu 1 274 -38 575 185 13 34 chr15 61731970 61732204 -23963550 + GA-rich Low_complexity Low_complexity 1 229 0 374 249 129 43 chr15 61732231 61732693 -23963061 + L1MB7 LINE L1 5189 5701 -461 248 221 47 23 chr15 61732718 61732804 -23962950 + L1MB7 LINE L1 5798 5885 -236 918 241 70 35 chr15 61733451 61733792 -23961962 - L1MC4a LINE L1 -1765 6043 5691 558 207 9 17 chr15 61734316 61734432 -23961322 - FLAM_C SINE Alu -18 115 1 207 312 28 46 chr15 61734932 61735034 -23960720 + L2 LINE L2 2926 3027 -245 2188 128 0 0 chr15 61735034 61735332 -23960422 + AluSx SINE Alu 1 298 -14 418 299 90 37 chr15 61735413 61735547 -23960207 - L2 LINE L2 -15 3257 3117 288 247 47 0 chr15 61735740 61735825 -23959929 - MIR SINE MIR -114 148 60 227 255 0 0 chr15 61736031 61736082 -23959672 + L2 LINE L2 2237 2287 -1027 250 286 124 19 chr15 61736082 61736187 -23959567 + L2 LINE L2 3180 3295 -18 183 162 0 0 chr15 61736337 61736374 -23959380 + GA-rich Low_complexity Low_complexity 6 42 0 480 301 118 39 chr15 61736381 61737146 -23958608 - L1MEd LINE L1 -3193 2936 2112 565 280 61 97 chr15 61737205 61737412 -23958342 - L1MEd LINE L1 -4974 1145 932 1415 153 27 96 chr15 61737412 61737746 -23958008 - AluJb SINE Alu -1 311 1 565 280 61 97 chr15 61737746 61738145 -23957609 - L1MEd LINE L1 -5187 932 561 221 0 35 0 chr15 61738564 61738593 -23957161 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 610 189 187 13 chr15 61738727 61738878 -23956876 + MIR SINE MIR 30 198 -64 2281 58 0 7 chr15 61739723 61740001 -23955753 - AluY SINE Alu -8 303 28 191 36 36 0 chr15 61740036 61740064 -23955690 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1562 171 17 21 chr15 61742295 61742582 -23953172 + L1MB7 LINE L1 5881 6166 -18 2005 145 3 7 chr15 61743419 61743722 -23952032 - AluSx SINE Alu -10 302 1 21 0 0 0 chr15 61745107 61745128 -23950626 + AT_rich Low_complexity Low_complexity 1 21 0 1564 197 3 3 chr15 61745140 61745429 -23950325 + AluJb SINE Alu 1 289 -23 323 214 22 0 chr15 61746249 61746338 -23949416 + (TATG)n Simple_repeat Simple_repeat 3 93 0 633 189 196 0 chr15 61746380 61746523 -23949231 + MER5A DNA MER1_type 1 171 -18 828 148 0 54 chr15 61746545 61746694 -23949060 + FLAM_C SINE Alu 3 143 0 261 269 90 0 chr15 61747405 61747483 -23948271 + L1MEd LINE L1 569 653 -5466 283 294 27 7 chr15 61747672 61747818 -23947936 + L1MEd LINE L1 851 999 -5133 316 283 132 33 chr15 61747828 61747980 -23947774 + L1MEd LINE L1 1045 1211 -4908 282 323 180 16 chr15 61748014 61748203 -23947551 + L1MEd LINE L1 1398 1617 -4512 193 299 145 26 chr15 61748363 61748480 -23947274 - L3b LINE CR1 -1 1582 1452 563 288 64 58 chr15 61748489 61748833 -23946921 - L3 LINE CR1 -177 1400 1055 2112 132 0 13 chr15 61749439 61749749 -23946005 - AluSq SINE Alu -7 306 1 266 257 63 69 chr15 61750286 61750461 -23945293 - L1ME3A LINE L1 -10 6160 5987 611 235 0 0 chr15 61750564 61750683 -23945071 - MER106A DNA MER1_type -117 119 1 908 252 136 6 chr15 61750696 61751067 -23944687 - L1MC4 LINE L1 -373 5797 5521 21 36 0 0 chr15 61751207 61751235 -23944519 + AT_rich Low_complexity Low_complexity 1 28 0 817 173 0 62 chr15 61751650 61751812 -23943942 - AluJb SINE Alu -15 297 146 1813 162 0 7 chr15 61752431 61752739 -23943015 + AluSx SINE Alu 1 306 0 202 316 61 82 chr15 61753259 61753455 -23942299 + MIR SINE MIR 68 259 -3 234 252 32 89 chr15 61753804 61753927 -23941827 - MIR SINE MIR -40 222 107 1578 206 0 3 chr15 61754273 61754560 -23941194 + AluJo SINE Alu 1 286 -26 1933 164 0 7 chr15 61755116 61755421 -23940333 - AluSx SINE Alu -9 303 1 320 332 77 19 chr15 61755451 61755659 -23940095 + L1ME LINE L1 5558 5777 -344 764 167 33 0 chr15 61755951 61756071 -23939683 + FRAM SINE Alu 28 151 -25 1456 140 121 0 chr15 61757087 61757202 -23938552 + AluJo SINE Alu 1 101 -211 274 23 47 0 chr15 61757202 61757245 -23938509 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 1456 140 121 0 chr15 61757245 61757394 -23938360 + AluJo SINE Alu 101 297 -15 1055 232 129 59 chr15 61757698 61758039 -23937715 + MLT1A1 LTR MaLR 1 365 0 2080 122 3 0 chr15 61758451 61758738 -23937016 - AluSx SINE Alu -24 288 1 22 80 0 0 chr15 61759098 61759148 -23936606 + AT_rich Low_complexity Low_complexity 1 50 0 238 281 90 56 chr15 61760558 61760846 -23934908 + HAL1 LINE L1 814 1111 -1396 291 132 0 0 chr15 61760882 61760920 -23934834 + Alu SINE Alu 11 48 -255 1231 186 146 11 chr15 61761135 61761410 -23934344 + MER2 DNA MER2_type 34 345 0 1824 135 84 0 chr15 61761418 61761692 -23934062 - AluSx SINE Alu -15 297 1 437 285 110 68 chr15 61761808 61762220 -23933534 - L2 LINE L2 -269 3044 2379 387 289 110 44 chr15 61762499 61762772 -23932982 + L1MC4a LINE L1 5678 5968 -153 1745 149 3 74 chr15 61762906 61763242 -23932512 + AluJb SINE Alu 1 312 0 21 36 0 0 chr15 61763395 61763423 -23932331 + AT_rich Low_complexity Low_complexity 1 28 0 289 324 70 0 chr15 61763732 61763874 -23931880 - L1ME LINE L1 -381 5740 5589 21 36 0 0 chr15 61764631 61764659 -23931095 + AT_rich Low_complexity Low_complexity 1 28 0 237 278 57 57 chr15 61765047 61765223 -23930531 + L2 LINE L2 3099 3274 -39 393 215 139 19 chr15 61766197 61766355 -23929399 - L1ME4a LINE L1 0 6121 5945 2384 80 7 7 chr15 61766461 61766762 -23928992 - AluSx SINE Alu -11 301 1 743 237 71 36 chr15 61766770 61766874 -23928880 + Charlie4 DNA MER1_type 3 102 -1859 2210 92 3 0 chr15 61766874 61767178 -23928576 - AluY SINE Alu -6 305 1 743 237 71 36 chr15 61767178 61767326 -23928428 + Charlie4 DNA MER1_type 102 264 -1697 373 206 65 0 chr15 61767330 61767422 -23928332 + Charlie4 DNA MER1_type 1864 1961 0 400 246 35 21 chr15 61767496 61767638 -23928116 - L1ME4a LINE L1 -436 5685 5542 1965 91 4 4 chr15 61768146 61768420 -23927334 + AluY SINE Alu 32 305 -6 260 291 120 62 chr15 61769017 61769292 -23926462 - MLT1K LTR MaLR -158 430 140 * 264 306 0 0 chr15 61769262 61769324 -23926430 - MLT1K LTR MaLR -350 238 177 1974 163 44 31 chr15 61769491 61769878 -23925876 + L1MB4 LINE L1 5431 5822 -361 671 182 0 18 chr15 61769883 61769993 -23925761 + FLAM_A SINE Alu 6 113 -29 1585 168 39 3 chr15 61770025 61770310 -23925444 + AluJb SINE Alu 13 307 -5 1748 163 42 0 chr15 61770316 61770647 -23925107 + L1MB4 LINE L1 5834 6178 -2 1160 214 132 107 chr15 61770716 61770806 -23924948 - Charlie2a DNA MER1_type -204 2658 2572 2253 97 0 3 chr15 61770806 61771116 -23924638 - AluSc SINE Alu 0 309 1 1160 214 132 107 chr15 61771116 61771198 -23924556 - Charlie2a DNA MER1_type -290 2572 2494 2843 13 0 0 chr15 61771198 61771516 -23924238 - AluYb8 SINE Alu 0 318 1 1160 214 132 107 chr15 61771516 61771703 -23924051 - Charlie2a DNA MER1_type -368 2494 2313 1340 190 141 0 chr15 61771703 61771966 -23923788 - AluJb SINE Alu -2 300 1 1160 214 132 107 chr15 61771966 61772023 -23923731 - Charlie2a DNA MER1_type -549 2313 2259 1773 158 27 0 chr15 61772023 61772321 -23923433 + AluSx SINE Alu 1 306 -6 1160 214 132 107 chr15 61772321 61772365 -23923389 - Charlie2a DNA MER1_type -603 2259 2218 1992 115 27 3 chr15 61772365 61772660 -23923094 - AluSx SINE Alu -6 306 5 1160 214 132 107 chr15 61772660 61772983 -23922771 - Charlie2a DNA MER1_type -644 2218 1905 2167 77 13 0 chr15 61772983 61773283 -23922471 - AluY SINE Alu -7 304 1 1160 214 132 107 chr15 61773283 61773319 -23922435 - Charlie2a DNA MER1_type -957 1905 1871 1497 177 16 51 chr15 61773319 61773630 -23922124 + AluJo SINE Alu 1 300 -12 1160 214 132 107 chr15 61773630 61773715 -23922039 - Charlie2a DNA MER1_type -991 1871 1725 23 54 0 0 chr15 61773737 61773774 -23921980 + AT_rich Low_complexity Low_complexity 1 37 0 960 162 24 0 chr15 61773783 61773950 -23921804 + AluJo SINE Alu 1 171 -141 651 229 86 54 chr15 61773968 61774111 -23921643 - Charlie2a DNA MER1_type -1152 1710 1573 1646 162 0 7 chr15 61774111 61774401 -23921353 - AluJb SINE Alu -24 288 1 651 229 86 54 chr15 61774401 61774537 -23921217 - Charlie2a DNA MER1_type -1289 1573 1422 2234 208 116 71 chr15 61774694 61775928 -23919826 - L1ME2 LINE L1 -10 6154 4873 241 253 23 11 chr15 61775939 61775959 -23919795 - L1ME2 LINE L1 -1548 4598 4580 2077 160 11 3 chr15 61775959 61776322 -23919432 + MER47A DNA MER2_type 1 366 0 241 253 23 11 chr15 61776322 61776388 -23919366 - L1ME2 LINE L1 -1566 4580 4511 2122 114 0 16 chr15 61776390 61776706 -23919048 - AluSx SINE Alu -1 311 1 695 181 101 14 chr15 61777170 61777308 -23918446 - FRAM SINE Alu -16 150 1 491 210 196 21 chr15 61777310 61777453 -23918301 - MER5A DNA MER1_type -8 181 14 366 277 80 0 chr15 61782930 61783042 -23912712 - MIR SINE MIR -122 140 20 1955 121 0 0 chr15 61783480 61783785 -23911969 - AluSg1 SINE Alu 0 305 1 306 260 52 0 chr15 61784040 61784117 -23911637 + L2 LINE L2 3231 3311 -2 2350 72 0 25 chr15 61786549 61786868 -23908886 + AluY SINE Alu 1 311 0 359 205 164 98 chr15 61787315 61787502 -23908252 - L1MC4 LINE L1 -10 8032 7814 1367 172 95 18 chr15 61787502 61787787 -23907967 + AluJo SINE Alu 3 309 -3 359 205 164 98 chr15 61787787 61787916 -23907838 - L1MC4 LINE L1 -228 7814 7695 1708 172 17 0 chr15 61788293 61788584 -23907170 - AluJo SINE Alu -16 296 1 370 211 275 0 chr15 61788694 61788803 -23906951 - MER5A DNA MER1_type 0 189 51 361 283 136 23 chr15 61789020 61789197 -23906557 + MIR SINE MIR 58 254 -8 560 331 156 19 chr15 61789197 61789608 -23906146 + L3 LINE CR1 230 696 -881 196 370 67 36 chr15 61789684 61789849 -23905905 + L2 LINE L2 235 404 -2910 1467 166 51 27 chr15 61790449 61790745 -23905009 + AluJo SINE Alu 1 303 -9 2069 115 14 0 chr15 61791052 61791340 -23904414 - AluSx SINE Alu -20 292 1 726 186 11 62 chr15 61791559 61791736 -23904018 + L1ME LINE L1 5448 5615 -551 376 326 50 45 chr15 61792338 61792580 -23903174 - MIR SINE MIR -18 244 2 185 318 63 0 chr15 61793801 61793864 -23901890 - MIR SINE MIR -183 79 13 240 216 0 0 chr15 61794342 61794393 -23901361 + MIR SINE MIR 96 146 -62 457 143 83 0 chr15 61795857 61795941 -23899813 + FLAM_C SINE Alu 30 120 -23 264 268 222 13 chr15 61799232 61799385 -23896369 - MER5A DNA MER1_type -3 186 2 229 256 23 58 chr15 61799453 61799539 -23896215 + MIR SINE MIR 84 166 -96 1731 159 81 15 chr15 61799542 61799876 -23895878 + L1MC1 LINE L1 5961 6316 -17 517 125 54 119 chr15 61802754 61802798 -23892956 + Charlie5 DNA MER1_type 2467 2512 -112 2208 90 0 0 chr15 61802798 61803087 -23892667 - AluSc SINE Alu -20 289 1 517 125 54 119 chr15 61803087 61803168 -23892586 + Charlie5 DNA MER1_type 2512 2581 -43 1819 155 3 7 chr15 61803168 61803465 -23892289 + AluJb SINE Alu 1 296 -16 517 125 54 119 chr15 61803465 61803506 -23892248 + Charlie5 DNA MER1_type 2581 2623 -1 2286 76 7 0 chr15 61803548 61803852 -23891902 + AluY SINE Alu 1 306 -5 2027 72 54 0 chr15 61804747 61805024 -23890730 + AluSg SINE Alu 1 292 -18 180 250 107 18 chr15 61805514 61805570 -23890184 + MER5B DNA MER1_type 1 61 -117 * 435 276 20 0 chr15 61805560 61805658 -23890096 - MER5A DNA MER1_type -80 109 10 192 155 107 131 chr15 61805939 61806023 -23889731 - MIR SINE MIR -89 119 38 198 0 0 0 chr15 61806847 61806869 -23888885 + (A)n Simple_repeat Simple_repeat 1 22 0 270 81 0 0 chr15 61807643 61807680 -23888074 + (T)n Simple_repeat Simple_repeat 1 37 0 1906 104 7 7 chr15 61808637 61808937 -23886817 + AluSg SINE Alu 1 300 0 1483 177 35 3 chr15 61808947 61809230 -23886524 + AluJo SINE Alu 1 292 -20 2214 77 6 26 chr15 61809234 61809545 -23886209 + AluSx SINE Alu 1 305 -7 417 251 312 0 chr15 61810010 61810225 -23885529 - L2 LINE L2 -33 3280 2999 2259 93 0 3 chr15 61811422 61811735 -23884019 - AluSx SINE Alu 0 312 1 240 205 84 36 chr15 61812423 61812506 -23883248 - L3 LINE CR1 -257 1320 1234 299 226 0 0 chr15 61812897 61812950 -23882804 - MIR SINE MIR -164 98 46 894 214 55 15 chr15 61813762 61813963 -23881791 + MER20 DNA MER1_type 7 215 -4 215 297 94 0 chr15 61814739 61814803 -23880951 + L2 LINE L2 3200 3269 -3 1325 215 21 17 chr15 61815074 61815362 -23880392 + AluJo SINE Alu 4 292 -10 449 144 192 0 chr15 61815463 61815567 -23880187 - L1MC4 LINE L1 -2 8040 7917 993 148 0 0 chr15 61815575 61815724 -23880030 - AluSg/x SINE Alu -30 280 132 2174 98 10 0 chr15 61815724 61816021 -23879733 - AluSp SINE Alu -13 300 1 198 0 0 0 chr15 61816031 61816053 -23879701 + (TA)n Simple_repeat Simple_repeat 1 22 0 2724 64 19 8 chr15 61816119 61816478 -23879276 - L1PA5 LINE L1 0 6154 5792 731 188 59 16 chr15 61816478 61816664 -23879090 - L1MC4 LINE L1 -131 7911 7718 814 222 6 23 chr15 61816725 61816901 -23878853 - AluJo SINE Alu -138 174 2 235 177 129 0 chr15 61816922 61816984 -23878770 - L1MA5 LINE L1 -266 6034 5965 1707 147 10 24 chr15 61817270 61817563 -23878191 + AluJo SINE Alu 1 289 -23 247 219 42 22 chr15 61817606 61817696 -23878058 + MIR SINE MIR 59 153 -55 22 0 0 0 chr15 61821219 61821241 -23874513 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 61821796 61821825 -23873929 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr15 61821957 61821980 -23873774 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr15 61824519 61824563 -23871191 + AT_rich Low_complexity Low_complexity 1 44 0 239 296 82 0 chr15 61825400 61825498 -23870256 - MIR SINE MIR -56 206 101 1968 135 6 31 chr15 61825553 61825871 -23869883 - AluSx SINE Alu -1 311 2 264 360 0 0 chr15 61826664 61826836 -23868918 + CT-rich Low_complexity Low_complexity 1 172 0 230 222 37 0 chr15 61827496 61827550 -23868204 - MIR SINE MIR -59 149 94 304 294 59 25 chr15 61827882 61828001 -23867753 - L2 LINE L2 -3 3310 3188 192 333 138 0 chr15 61828019 61828157 -23867597 - MIR3 SINE MIR -21 187 31 235 274 36 12 chr15 61829121 61829233 -23866521 - MIR SINE MIR -58 150 72 220 241 19 0 chr15 61831593 61831647 -23864107 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2329 104 0 0 chr15 61831963 61832270 -23863484 + AluSx SINE Alu 1 307 -5 830 181 7 7 chr15 61832601 61832756 -23862998 + MER5A DNA MER1_type 2 156 -33 711 240 7 7 chr15 61833494 61833648 -23862106 + AluJb SINE Alu 2 155 -157 881 98 202 81 chr15 61833939 61834112 -23861642 - MER46A DNA MER2_type -35 201 8 1358 122 50 5 chr15 61835009 61835230 -23860524 - AluJb SINE Alu -81 231 1 198 0 0 0 chr15 61835345 61835367 -23860387 + (T)n Simple_repeat Simple_repeat 1 22 0 2332 97 0 28 chr15 61835378 61835698 -23860056 + AluSq SINE Alu 1 311 -2 678 218 47 33 chr15 61835977 61836188 -23859566 - L1ME3 LINE L1 -29 6133 5920 217 266 0 16 chr15 61837097 61837161 -23858593 + (CCG)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr15 61837546 61837567 -23858187 + GC_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr15 61837928 61837957 -23857797 + (T)n Simple_repeat Simple_repeat 1 29 0 540 187 65 8 chr15 61839429 61839552 -23856202 - FLAM_C SINE Alu -2 131 2 1834 56 0 9 chr15 61840432 61840663 -23855091 + L1PA7 LINE L1 5926 6154 0 2280 90 17 0 chr15 61840854 61841143 -23854611 - AluSg SINE Alu -16 294 1 2500 85 0 0 chr15 61841334 61841640 -23854114 + AluSx SINE Alu 1 306 -6 1471 171 40 0 chr15 61841640 61841891 -23853863 - AluJo SINE Alu -35 277 16 1248 235 94 10 chr15 61841900 61842305 -23853449 - L1M4 LINE L1 -1539 4607 4169 2362 95 0 0 chr15 61842305 61842610 -23853144 - AluSq SINE Alu -8 305 1 548 265 11 2 chr15 61842663 61842844 -23852910 + MER58A DNA MER1_type 1 224 0 440 303 124 26 chr15 61844011 61844318 -23851436 + L2 LINE L2 2956 3292 -21 218 295 169 18 chr15 61844422 61844588 -23851166 + MIR SINE MIR 21 211 -51 1343 115 49 35 chr15 61845065 61845158 -23850596 - MER30 DNA MER1_type 0 230 140 2358 91 0 0 chr15 61845158 61845455 -23850299 + AluSx SINE Alu 1 297 -15 1343 115 49 35 chr15 61845455 61845587 -23850167 - MER30 DNA MER1_type -90 140 2 234 0 0 0 chr15 61848611 61848637 -23847117 + (TTA)n Simple_repeat Simple_repeat 2 27 0 870 142 21 7 chr15 61848645 61848786 -23846968 - FRAM SINE Alu -36 140 1 936 214 33 5 chr15 61848786 61849001 -23846753 - L1MB7 LINE L1 -46 6138 5918 216 109 55 36 chr15 61849001 61849056 -23846698 + (TATG)n Simple_repeat Simple_repeat 1 56 0 390 40 145 0 chr15 61849063 61849215 -23846539 + (CATAT)n Simple_repeat Simple_repeat 2 175 0 390 40 145 0 chr15 61849243 61849395 -23846359 + (CATAT)n Simple_repeat Simple_repeat 2 175 0 472 90 51 40 chr15 61849420 61849597 -23846157 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 402 123 11 53 chr15 61849584 61849771 -23845983 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 3503 174 56 11 chr15 61849775 61850863 -23844891 - L1MB7 LINE L1 -249 5929 4796 1744 227 38 52 chr15 61850851 61851450 -23844304 - L1MB7 LINE L1 -1639 4507 3917 * 1403 157 21 32 chr15 61851450 61851718 -23844036 + MLT1D LTR MaLR 248 503 -2 217 163 0 23 chr15 61852083 61852126 -23843628 + CT-rich Low_complexity Low_complexity 3 44 0 351 0 0 0 chr15 61852126 61852165 -23843589 + (TG)n Simple_repeat Simple_repeat 2 40 0 1643 149 49 39 chr15 61853195 61853503 -23842251 - AluJb SINE Alu -1 311 1 580 193 121 0 chr15 61853531 61853671 -23842083 - L1MC5 LINE L1 -110 7851 7695 1294 225 252 9 chr15 61855109 61855549 -23840205 - LTR10B LTR ERV1 0 547 1 27497 239 29 27 chr15 61855553 61862252 -23833502 - HERVI LTR ERV1 -2 7783 1074 3410 191 27 40 chr15 61862311 61862603 -23833151 - HERVI LTR ERV1 -5971 678 384 955 79 0 53 chr15 61862603 61862793 -23832961 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 3410 191 27 40 chr15 61862793 61863345 -23832409 - HERVI LTR ERV1 -6265 384 1 2348 91 0 28 chr15 61863360 61863678 -23832076 + AluY SINE Alu 1 309 -2 1180 180 30 69 chr15 61863678 61864115 -23831639 - LTR10B LTR ERV1 -5 542 1 455 179 21 32 chr15 61864678 61864773 -23830981 + LTR9B LTR ERV1 7 100 -544 1151 110 0 0 chr15 61864773 61864928 -23830826 - AluSg/x SINE Alu -2 308 154 2290 168 107 7 chr15 61864931 61865389 -23830365 + LTR9B LTR ERV1 141 644 0 306 0 0 0 chr15 61866067 61866101 -23829653 + (TG)n Simple_repeat Simple_repeat 2 35 0 309 26 0 0 chr15 61867409 61867447 -23828307 + (TG)n Simple_repeat Simple_repeat 2 39 0 2245 135 0 0 chr15 61867583 61867887 -23827867 - AluSx SINE Alu -8 304 1 742 131 41 7 chr15 61868355 61868500 -23827254 - Charlie1 DNA MER1_type 0 2761 2612 1211 178 0 9 chr15 61868715 61868929 -23826825 - AluJb SINE Alu -2 310 99 361 224 61 79 chr15 61869010 61869238 -23826516 - L1ME4a LINE L1 -3 6118 5895 225 0 0 0 chr15 61869238 61869263 -23826491 + (TA)n Simple_repeat Simple_repeat 2 26 0 2467 76 0 3 chr15 61869263 61869566 -23826188 - AluY SINE Alu -9 302 1 570 331 124 30 chr15 61869624 61869987 -23825767 + L1M4 LINE L1 4191 4587 -1559 377 191 0 0 chr15 61869991 61870054 -23825700 + AluS SINE Alu 2 64 -239 1097 166 0 6 chr15 61870054 61870229 -23825525 + AluJb SINE Alu 132 305 -7 236 131 50 20 chr15 61870246 61870345 -23825409 + (TA)n Simple_repeat Simple_repeat 1 102 0 862 103 0 0 chr15 61870758 61870865 -23824889 + FLAM_C SINE Alu 1 107 -36 186 43 0 0 chr15 61870865 61870888 -23824866 + (TC)n Simple_repeat Simple_repeat 1 23 0 195 114 0 0 chr15 61870889 61870924 -23824830 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr15 61871153 61871184 -23824570 + (CATA)n Simple_repeat Simple_repeat 2 32 0 268 256 68 34 chr15 61871401 61871518 -23824236 + L2 LINE L2 1903 2023 -1291 322 395 23 34 chr15 61871519 61871696 -23824058 + L1MC4a LINE L1 5751 5925 -1883 219 327 116 45 chr15 61871969 61872168 -23823586 + L2 LINE L2 2139 2351 -963 180 0 0 0 chr15 61872361 61872381 -23823373 + (TG)n Simple_repeat Simple_repeat 1 20 0 2211 118 0 0 chr15 61872439 61872726 -23823028 - AluSq SINE Alu -26 287 1 910 40 89 0 chr15 61872790 61872914 -23822840 - LTR15 LTR ERV1 -9 484 350 937 184 143 15 chr15 61872922 61873118 -23822636 + 7SLRNA srpRNA srpRNA 95 315 -5 231 286 190 19 chr15 61877048 61877206 -23818548 - MIR SINE MIR -64 144 4 1531 127 25 20 chr15 61879270 61879515 -23816239 - AluJb SINE Alu -32 280 35 288 277 12 12 chr15 61879642 61879725 -23816029 + MIR SINE MIR 66 148 -114 216 0 0 0 chr15 61880467 61880491 -23815263 + (CCCTG)n Simple_repeat Simple_repeat 5 28 0 238 329 12 0 chr15 61883008 61883090 -23812664 + MIR SINE MIR 65 147 -61 301 175 18 0 chr15 61883360 61883438 -23812316 - MIR SINE MIR -62 146 104 201 239 43 86 chr15 61883754 61883850 -23811904 + MIR SINE MIR 97 189 -73 2302 94 0 7 chr15 61883850 61884147 -23811607 - AluY SINE Alu -16 295 1 201 239 43 86 chr15 61884147 61884167 -23811587 + MIR SINE MIR 189 208 -54 1254 145 48 14 chr15 61884962 61885169 -23810585 - AluJb SINE Alu -16 296 83 231 357 48 8 chr15 61885585 61885711 -23810043 + L2 LINE L2 2919 3049 -223 249 235 111 0 chr15 61886020 61886101 -23809653 + MER5A DNA MER1_type 47 136 -53 248 312 64 0 chr15 61890012 61890121 -23805633 - L2 LINE L2 -1 3271 3156 180 0 0 0 chr15 61890359 61890379 -23805375 + (A)n Simple_repeat Simple_repeat 1 20 0 751 190 0 29 chr15 61890755 61890892 -23804862 - FLAM_C SINE Alu 0 133 1 213 254 75 0 chr15 61891404 61891471 -23804283 - MIR SINE MIR -63 145 74 312 225 14 0 chr15 61893458 61893529 -23802225 - MER63 DNA MER1_type -9 1052 981 * 363 282 27 0 chr15 61893524 61893634 -23802120 - MER63 DNA MER1_type -321 741 3 318 180 0 0 chr15 61893673 61893742 -23802012 - MLT2B2 LTR ERVL 0 515 452 325 261 34 11 chr15 61893743 61893831 -23801923 + L1MC4 LINE L1 6614 6703 -1339 2689 102 17 24 chr15 61893831 61894243 -23801511 - MLT2A1 LTR ERVL -35 409 1 339 237 0 0 chr15 61895403 61895496 -23800258 + (TG)n Simple_repeat Simple_repeat 2 94 0 2157 121 0 0 chr15 61895504 61895794 -23799960 - AluSg SINE Alu -20 290 1 511 258 115 53 chr15 61895803 61896012 -23799742 + L1ME4a LINE L1 5899 6120 -1 1381 254 131 19 chr15 61896834 61897362 -23798392 + MLT1E LTR MaLR 3 589 -4 2145 110 7 13 chr15 61897737 61898047 -23797707 + AluSc SINE Alu 1 308 -1 2417 103 3 3 chr15 61898186 61898498 -23797256 - AluSp SINE Alu -1 312 1 2021 180 150 91 chr15 61898876 61899054 -23796700 + Charlie1a DNA MER1_type 67 233 -2528 1918 168 0 3 chr15 61899054 61899351 -23796403 + AluSx SINE Alu 5 300 -12 2021 180 150 91 chr15 61899351 61899409 -23796345 + Charlie1a DNA MER1_type 233 286 -2475 2006 156 0 3 chr15 61899409 61899704 -23796050 + AluJb SINE Alu 13 306 -6 2021 180 150 91 chr15 61899704 61900267 -23795487 + Charlie1a DNA MER1_type 286 914 -541 1316 166 0 10 chr15 61900271 61900476 -23795278 + AluJo SINE Alu 87 289 -23 782 203 149 68 chr15 61900507 61900876 -23794878 + Charlie1a DNA MER1_type 1057 1455 0 2384 104 16 3 chr15 61901351 61901659 -23794095 + AluSx SINE Alu 1 312 0 201 147 0 0 chr15 61901796 61901830 -23793924 + (CA)n Simple_repeat Simple_repeat 2 35 0 395 342 138 21 chr15 61901837 61902170 -23793584 + L1ME4a LINE L1 5746 6117 -4 2264 123 3 0 chr15 61902978 61903280 -23792474 + AluSg SINE Alu 1 303 -7 240 35 0 0 chr15 61903442 61903471 -23792283 + (CA)n Simple_repeat Simple_repeat 2 30 0 2048 92 14 38 chr15 61904596 61904888 -23790866 + AluSx SINE Alu 3 287 -25 1211 96 6 0 chr15 61904888 61905044 -23790710 - AluSq SINE Alu -156 157 1 450 0 0 0 chr15 61906094 61906144 -23789610 + (TG)n Simple_repeat Simple_repeat 2 51 0 231 296 70 14 chr15 61906445 61906516 -23789238 + MIR SINE MIR 11 85 -177 217 317 79 0 chr15 61907328 61907429 -23788325 + MIR SINE MIR 84 192 -70 246 128 0 0 chr15 61910164 61910203 -23785551 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr15 61911685 61911707 -23784047 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 61912260 61912289 -23783465 + AT_rich Low_complexity Low_complexity 1 29 0 216 203 147 7 chr15 61914507 61914650 -23781104 + (TTAAA)n Simple_repeat Simple_repeat 3 165 0 276 309 169 0 chr15 61915446 61915582 -23780172 - MIR SINE MIR -6 256 98 2003 138 6 31 chr15 61915634 61915952 -23779802 - AluSx SINE Alu -1 311 2 189 216 24 0 chr15 61916483 61916533 -23779221 - MIR SINE MIR -56 152 100 247 222 37 0 chr15 61917331 61917385 -23778369 - MIR SINE MIR -59 149 94 327 252 76 42 chr15 61917717 61917836 -23777918 - L2 LINE L2 -3 3310 3188 238 343 133 0 chr15 61917849 61917992 -23777762 - MIR3 SINE MIR -16 192 31 265 300 47 19 chr15 61918957 61919129 -23776625 - MIR SINE MIR -58 150 12 2155 115 0 0 chr15 61921787 61922099 -23773655 + AluSx SINE Alu 1 312 0 897 195 7 0 chr15 61922435 61922589 -23773165 + MER5A DNA MER1_type 2 156 -33 1517 201 4 4 chr15 61923333 61923607 -23772147 + AluJo SINE Alu 1 274 -38 560 191 13 33 chr15 61923721 61923959 -23771795 + GA-rich Low_complexity Low_complexity 1 233 0 323 244 126 44 chr15 61923986 61924448 -23771306 + L1MB7 LINE L1 5189 5701 -461 817 258 56 20 chr15 61925206 61925547 -23770207 - L1MC4a LINE L1 -1765 6043 5691 518 207 9 17 chr15 61926071 61926187 -23769567 - FLAM_C SINE Alu -18 115 1 220 312 28 46 chr15 61926687 61926789 -23768965 + L2 LINE L2 2926 3027 -245 2170 134 0 0 chr15 61926789 61927087 -23768667 + AluSx SINE Alu 1 298 -14 420 299 90 37 chr15 61927168 61927302 -23768452 - L2 LINE L2 -15 3257 3117 292 247 47 0 chr15 61927495 61927580 -23768174 - MIR SINE MIR -114 148 60 223 255 0 0 chr15 61927786 61927837 -23767917 + L2 LINE L2 2237 2287 -1027 262 286 124 19 chr15 61927837 61927942 -23767812 + L2 LINE L2 3180 3295 -18 183 162 0 0 chr15 61928092 61928129 -23767625 + GA-rich Low_complexity Low_complexity 2 38 0 22 0 0 0 chr15 61928277 61928299 -23767455 + AT_rich Low_complexity Low_complexity 1 22 0 301 292 139 36 chr15 61928377 61928901 -23766853 - L1MEd LINE L1 -3440 2689 2112 344 285 61 97 chr15 61928960 61929167 -23766587 - L1MEd LINE L1 -4974 1145 932 1437 152 27 98 chr15 61929167 61929502 -23766252 - AluJb SINE Alu -1 311 1 344 285 61 97 chr15 61929502 61929901 -23765853 - L1MEd LINE L1 -5187 932 561 221 0 35 0 chr15 61930320 61930349 -23765405 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 575 210 187 13 chr15 61930483 61930634 -23765120 + MIR SINE MIR 30 198 -64 2008 73 0 8 chr15 61931471 61931768 -23763986 - AluY SINE Alu 0 322 28 1421 181 11 14 chr15 61934032 61934319 -23761435 + L1MB7 LINE L1 5881 6166 -18 2126 125 0 7 chr15 61935147 61935451 -23760303 - AluSx SINE Alu -10 302 1 21 0 0 0 chr15 61936825 61936846 -23758908 + AT_rich Low_complexity Low_complexity 1 21 0 1613 190 3 3 chr15 61936858 61937147 -23758607 + AluJb SINE Alu 1 289 -23 314 198 25 0 chr15 61937967 61938048 -23757706 + (TATG)n Simple_repeat Simple_repeat 3 85 0 619 190 197 0 chr15 61938090 61938232 -23757522 + MER5A DNA MER1_type 1 170 -19 834 153 0 0 chr15 61938255 61938379 -23757375 + FLAM_C SINE Alu 3 126 -17 234 0 0 0 chr15 61938390 61938416 -23757338 + (A)n Simple_repeat Simple_repeat 1 26 0 319 279 107 17 chr15 61939379 61939710 -23756044 + L1MDb LINE L1 1128 1545 -4876 388 314 170 10 chr15 61939714 61939908 -23755846 + L1MDb LINE L1 1670 1894 -4512 570 307 61 58 chr15 61940192 61940537 -23755217 - L3 LINE CR1 -177 1400 1055 2254 111 3 7 chr15 61941143 61941450 -23754304 - AluSq SINE Alu -7 306 1 363 274 51 57 chr15 61941993 61942168 -23753586 - L1ME3A LINE L1 -10 6160 5987 570 227 0 0 chr15 61942276 61942395 -23753359 - MER106A DNA MER1_type -117 119 1 353 259 28 0 chr15 61942406 61942514 -23753240 - L1ME3A LINE L1 -218 5952 5842 778 233 117 4 chr15 61942530 61942779 -23752975 - L1ME3A LINE L1 -373 5797 5521 189 0 0 0 chr15 61942914 61942935 -23752819 + (TTA)n Simple_repeat Simple_repeat 2 22 0 816 169 0 69 chr15 61943354 61943514 -23752240 - AluJb SINE Alu -18 294 146 1992 160 0 10 chr15 61944142 61944455 -23751299 + AluSx SINE Alu 1 310 -2 198 0 0 0 chr15 61944497 61944519 -23751235 + (A)n Simple_repeat Simple_repeat 1 22 0 206 286 67 67 chr15 61945042 61945147 -23750607 + MIR SINE MIR 124 228 -34 225 299 63 31 chr15 61945514 61945641 -23750113 - MIR SINE MIR -25 237 107 1599 209 0 3 chr15 61945987 61946274 -23749480 + AluJo SINE Alu 1 286 -26 198 71 0 0 chr15 61946808 61946836 -23748918 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2119 128 0 7 chr15 61946838 61947134 -23748620 - AluSx SINE Alu -18 294 1 286 298 61 0 chr15 61947161 61947292 -23748462 + L1ME LINE L1 5558 5696 -425 667 183 35 0 chr15 61947664 61947779 -23747975 + FRAM SINE Alu 31 149 -27 1681 127 60 11 chr15 61948784 61949068 -23746686 + AluJo SINE Alu 1 298 -14 955 217 129 59 chr15 61949371 61949712 -23746042 + MLT1A1 LTR MaLR 1 365 0 2110 126 3 3 chr15 61950109 61950411 -23745343 - AluSx SINE Alu -10 302 1 255 208 20 139 chr15 61951566 61951667 -23744087 - MIR3 SINE MIR -50 158 70 462 319 73 47 chr15 61952249 61952550 -23743204 + HAL1 LINE L1 814 1122 -1385 2089 130 0 7 chr15 61952574 61952867 -23742887 + AluSc SINE Alu 11 301 -8 245 280 93 56 chr15 61953026 61953133 -23742621 + L2 LINE L2 3160 3270 -2 807 237 89 22 chr15 61953450 61953766 -23741988 + L1ME3A LINE L1 5614 5950 -220 2376 108 0 0 chr15 61953992 61954297 -23741457 - AluSp SINE Alu -7 306 2 368 237 205 57 chr15 61954373 61954656 -23741098 + L1M4 LINE L1 2947 3271 -2875 990 190 42 28 chr15 61954860 61955076 -23740678 - MER20 DNA MER1_type 0 219 1 230 297 81 61 chr15 61955439 61955749 -23740005 + HAL1 LINE L1 25 340 -2167 1619 175 0 50 chr15 61956024 61956367 -23739387 - AluJb SINE Alu 0 328 1 2414 84 0 0 chr15 61956438 61956736 -23739018 + AluSp SINE Alu 1 298 -15 516 248 104 30 chr15 61956763 61956965 -23738789 + HAL1 LINE L1 854 1070 -1437 445 222 137 98 chr15 61957032 61957506 -23738248 + MLT1H LTR MaLR 76 555 0 845 228 101 35 chr15 61957622 61958017 -23737737 + HAL1 LINE L1 1210 1630 -877 928 206 14 51 chr15 61958046 61958260 -23737494 - MIR SINE MIR -29 233 28 328 295 148 21 chr15 61958277 61958514 -23737240 + HAL1 LINE L1 1637 1903 -604 21 0 0 0 chr15 61958543 61958564 -23737190 + AT_rich Low_complexity Low_complexity 1 21 0 247 250 0 28 chr15 61958694 61958766 -23736988 + HAL1 LINE L1 2225 2294 -213 234 314 197 0 chr15 61959778 61959915 -23735839 + MIR SINE MIR 81 244 -18 3045 95 16 36 chr15 61960473 61960505 -23735249 + LTR15 LTR ERV1 1 32 -461 6871 53 21 3 chr15 61960505 61961465 -23734289 + L1PA5 LINE L1 5179 6154 0 3045 95 16 36 chr15 61961465 61961929 -23733825 + LTR15 LTR ERV1 32 487 -6 1662 141 4 0 chr15 61961994 61962261 -23733493 + AluSq SINE Alu 69 336 0 210 351 130 0 chr15 61962645 61962776 -23732978 - L2 LINE L2 -1017 2297 2150 194 235 112 51 chr15 61962861 61962959 -23732795 + L2 LINE L2 3146 3249 -23 328 286 113 47 chr15 61963020 61963233 -23732521 - L1MC4a LINE L1 -1835 5973 5747 206 323 223 20 chr15 61963233 61963484 -23732270 - L2 LINE L2 -1291 2023 1722 201 108 0 0 chr15 61963813 61963850 -23731904 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 813 138 9 0 chr15 61963854 61963970 -23731784 - FLAM_C SINE Alu -26 117 1 21 0 0 0 chr15 61964284 61964305 -23731449 + AT_rich Low_complexity Low_complexity 1 21 0 243 130 29 14 chr15 61964379 61964448 -23731306 + (TA)n Simple_repeat Simple_repeat 1 70 0 932 177 22 22 chr15 61964453 61964634 -23731120 - AluJb SINE Alu 0 312 132 327 238 0 0 chr15 61964634 61964697 -23731057 - AluS SINE Alu -239 64 2 395 324 101 11 chr15 61964785 61965063 -23730691 - L1M4 LINE L1 -1656 4490 4188 2376 82 0 3 chr15 61965121 61965424 -23730330 + AluY SINE Alu 1 302 -9 417 224 70 70 chr15 61965412 61965653 -23730101 + L1ME4a LINE L1 5879 6119 -2 1168 181 0 9 chr15 61965734 61965949 -23729805 + AluJb SINE Alu 99 311 -1 733 227 233 9 chr15 61965972 61966298 -23729456 + Charlie1 DNA MER1_type 2363 2761 0 2236 127 0 0 chr15 61966775 61967074 -23728680 + AluSx SINE Alu 1 299 -13 306 0 0 0 chr15 61967207 61967241 -23728513 + (CA)n Simple_repeat Simple_repeat 2 35 0 * 333 0 0 0 chr15 61967240 61967277 -23728477 + (TC)n Simple_repeat Simple_repeat 1 37 0 396 0 0 0 chr15 61968596 61968640 -23727114 + (CA)n Simple_repeat Simple_repeat 2 45 0 2322 170 102 7 chr15 61969321 61969781 -23725973 - LTR9B LTR ERV1 0 644 141 1180 97 0 0 chr15 61969784 61969939 -23725815 + AluSg/x SINE Alu 156 310 -2 471 168 21 32 chr15 61969939 61970034 -23725720 - LTR9B LTR ERV1 -544 100 7 734 209 0 0 chr15 61970194 61970333 -23725421 + HERVI LTR ERV1 711 849 -6936 27438 236 29 26 chr15 61970392 61977080 -23718674 + HERVI LTR ERV1 1074 7783 -2 1100 186 34 69 chr15 61977084 61977524 -23718230 + LTR10B LTR ERV1 1 547 0 564 200 121 0 chr15 61979694 61979834 -23715920 + L1MC5 LINE L1 7695 7851 -110 1648 141 67 27 chr15 61979862 61980159 -23715595 + AluJb SINE Alu 1 309 -3 315 0 0 0 chr15 61981184 61981219 -23714535 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 186 0 23 chr15 61981219 61981262 -23714492 + GA-rich Low_complexity Low_complexity 3 44 0 1403 157 21 32 chr15 61981627 61981895 -23713859 - MLT1D LTR MaLR -2 503 248 1746 227 38 52 chr15 61981895 61982494 -23713260 + L1MB7 LINE L1 3917 4507 -1639 * 3508 176 56 11 chr15 61982482 61983570 -23712184 + L1MB7 LINE L1 4796 5929 -249 425 106 11 58 chr15 61983574 61983762 -23711992 + (TA)n Simple_repeat Simple_repeat 1 179 0 560 101 51 13 chr15 61983827 61983985 -23711769 + (ATATG)n Simple_repeat Simple_repeat 2 165 0 216 109 55 36 chr15 61983989 61984044 -23711710 + (CATA)n Simple_repeat Simple_repeat 1 56 0 936 214 33 5 chr15 61984044 61984259 -23711495 + L1MB7 LINE L1 5918 6138 -46 870 142 21 7 chr15 61984259 61984400 -23711354 + FRAM SINE Alu 1 140 -36 207 0 0 0 chr15 61984408 61984431 -23711323 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1331 119 49 35 chr15 61987455 61987587 -23708167 + MER30 DNA MER1_type 2 140 -90 2345 94 0 0 chr15 61987587 61987884 -23707870 - AluSx SINE Alu -15 297 1 1331 119 49 35 chr15 61987884 61987977 -23707777 + MER30 DNA MER1_type 140 230 0 218 295 169 18 chr15 61988454 61988620 -23707134 - MIR SINE MIR -51 211 21 440 303 124 26 chr15 61988724 61989031 -23706723 - L2 LINE L2 -21 3292 2956 285 274 27 0 chr15 61990197 61990270 -23705484 - MER58A DNA MER1_type 0 224 150 548 259 0 0 chr15 61990270 61990378 -23705376 - MER58A DNA MER1_type 0 108 1 2359 98 0 0 chr15 61990431 61990738 -23705016 + AluSq SINE Alu 1 307 -6 1174 243 99 12 chr15 61990738 61991145 -23704609 + L1M4 LINE L1 4169 4614 -1532 1470 178 37 7 chr15 61991145 61991414 -23704340 + AluJo SINE Alu 1 277 -35 7551 28 12 1 chr15 61991575 61992633 -23703121 + L1PA3 LINE L1 5086 6152 -3 704 84 0 0 chr15 61993980 61994075 -23701679 + AluS SINE Alu 2 96 -216 21 0 0 0 chr15 61994305 61994326 -23701428 + AT_rich Low_complexity Low_complexity 1 21 0 186 344 130 0 chr15 61994609 61994740 -23701014 - L2 LINE L2 -1017 2297 2150 255 298 31 68 chr15 61995025 61995216 -23700538 - L1MC4a LINE L1 -1886 5922 5739 267 245 75 19 chr15 61995216 61995322 -23700432 - L2 LINE L2 -1300 2014 1903 209 32 0 32 chr15 61995544 61995575 -23700179 + (TATG)n Simple_repeat Simple_repeat 3 32 0 357 75 0 0 chr15 61995798 61995851 -23699903 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 204 40 0 0 chr15 61995852 61995877 -23699877 + (GA)n Simple_repeat Simple_repeat 1 25 0 808 122 0 0 chr15 61995877 61995984 -23699770 - FLAM_C SINE Alu -36 107 1 23 0 0 0 chr15 61996294 61996317 -23699437 + AT_rich Low_complexity Low_complexity 1 23 0 452 125 29 22 chr15 61996392 61996528 -23699226 + (TA)n Simple_repeat Simple_repeat 1 137 0 252 0 0 0 chr15 61996528 61996556 -23699198 + (CA)n Simple_repeat Simple_repeat 2 29 0 1099 170 0 6 chr15 61996557 61996739 -23699015 - AluJb SINE Alu 0 312 132 368 222 0 0 chr15 61996739 61996802 -23698952 - AluS SINE Alu -239 64 2 354 318 132 36 chr15 61996806 61997171 -23698583 - L1M4 LINE L1 -1559 4587 4188 344 222 94 71 chr15 61997187 61997229 -23698525 + L1ME4a LINE L1 5846 5886 -235 2342 97 7 3 chr15 61997229 61997539 -23698215 + AluY SINE Alu 1 311 0 344 222 94 71 chr15 61997539 61997762 -23697992 + L1ME4a LINE L1 5886 6117 -4 1371 258 131 19 chr15 61998580 61999108 -23696646 + MLT1E LTR MaLR 3 589 -4 2101 108 7 13 chr15 61999483 61999790 -23695964 + AluSc SINE Alu 1 305 -4 1518 103 5 5 chr15 61999932 62000136 -23695618 - AluSp SINE Alu -12 301 98 1497 121 0 0 chr15 62000236 62000455 -23695299 + AluSg/x SINE Alu 87 305 0 793 203 13 0 chr15 62000791 62000944 -23694810 + MER5A DNA MER1_type 2 156 -33 1513 201 4 4 chr15 62001689 62001963 -23693791 + AluJo SINE Alu 1 274 -38 581 133 31 39 chr15 62002077 62002305 -23693449 + GA-rich Low_complexity Low_complexity 1 226 0 398 224 152 46 chr15 62002335 62002751 -23693003 + L1M2 LINE L1 5189 5654 -658 241 221 47 23 chr15 62002820 62002906 -23692848 + L1ME LINE L1 5798 5885 -236 27073 48 2 3 chr15 62003258 62006617 -23689137 + L1P LINE L1 707 4062 -2084 199 338 134 0 chr15 62008658 62008800 -23686954 + MIR3 SINE MIR 31 191 -17 288 276 60 26 chr15 62008809 62008925 -23686829 + L2 LINE L2 3191 3310 -3 199 245 38 0 chr15 62009253 62009306 -23686448 + MIR SINE MIR 95 149 -59 198 0 0 0 chr15 62009444 62009466 -23686288 + (T)n Simple_repeat Simple_repeat 1 22 0 1925 146 7 29 chr15 62010485 62010794 -23684960 + AluSx SINE Alu 5 306 -6 931 179 143 15 chr15 62011733 62011929 -23683825 + 7SLRNA srpRNA srpRNA 95 315 -5 198 0 0 0 chr15 62012959 62012981 -23682773 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 255 277 197 6 chr15 62015603 62015761 -23679993 - MIR SINE MIR -64 144 4 192 269 115 0 chr15 62017424 62017502 -23678252 - MIR SINE MIR -63 145 59 1420 143 25 20 chr15 62017557 62017802 -23677952 - AluJo SINE Alu -32 280 35 288 325 8 25 chr15 62017851 62017971 -23677783 + MIR SINE MIR 31 148 -114 219 327 88 6 chr15 62019458 62019617 -23676137 + L2 LINE L2 2919 3090 -182 222 313 96 0 chr15 62019893 62019976 -23675778 - MER5A DNA MER1_type -33 156 66 248 312 64 0 chr15 62023905 62024014 -23671740 - L2 LINE L2 -1 3271 3156 189 0 0 0 chr15 62024251 62024272 -23671482 + (A)n Simple_repeat Simple_repeat 1 21 0 754 180 0 43 chr15 62024647 62024786 -23670968 - FLAM_C SINE Alu 0 133 1 213 254 75 0 chr15 62025298 62025365 -23670389 - MIR SINE MIR -63 145 74 312 225 14 0 chr15 62027352 62027423 -23668331 - MER63 DNA MER1_type -9 1052 981 * 390 273 27 0 chr15 62027418 62027528 -23668226 - MER63 DNA MER1_type -95 741 3 318 178 0 0 chr15 62027567 62027633 -23668121 - MLT2A1 LTR ERVL 0 515 455 2668 104 17 24 chr15 62027665 62028077 -23667677 - MLT2A1 LTR ERVL -35 409 1 360 226 0 0 chr15 62029235 62029328 -23666426 + (TG)n Simple_repeat Simple_repeat 2 94 0 2157 121 0 0 chr15 62029336 62029626 -23666128 - AluSg SINE Alu -20 290 1 239 248 117 53 chr15 62029639 62029845 -23665909 + L1ME4a LINE L1 5903 6121 0 1346 258 131 19 chr15 62030666 62031194 -23664560 + MLT1E LTR MaLR 3 589 -4 2249 97 6 13 chr15 62031569 62031880 -23663874 + AluSc SINE Alu 1 309 0 2472 90 3 3 chr15 62032056 62032367 -23663387 - AluSp SINE Alu -2 311 1 23 33 0 0 chr15 62032613 62032643 -23663111 + AT_rich Low_complexity Low_complexity 1 30 0 2084 185 114 91 chr15 62032777 62032926 -23662828 + Charlie1 DNA MER1_type 1426 1570 -1191 2014 155 0 3 chr15 62032926 62033223 -23662531 + AluSx SINE Alu 5 300 -12 2084 185 114 91 chr15 62033223 62033281 -23662473 + Charlie1 DNA MER1_type 1570 1625 -1136 1911 164 0 3 chr15 62033281 62033573 -23662181 + AluJb SINE Alu 13 303 -9 2084 185 114 91 chr15 62033573 62034141 -23661613 + Charlie1 DNA MER1_type 1625 2220 -541 1328 162 0 10 chr15 62034145 62034349 -23661405 + AluJb SINE Alu 87 288 -24 771 214 146 65 chr15 62034379 62034748 -23661006 + Charlie1 DNA MER1_type 2363 2761 0 2350 98 17 3 chr15 62035223 62035520 -23660234 + AluSx SINE Alu 1 301 -11 222 118 0 0 chr15 62035655 62035689 -23660065 + (CA)n Simple_repeat Simple_repeat 2 35 0 356 304 137 26 chr15 62035802 62036029 -23659725 + L1ME4a LINE L1 5866 6117 -4 2256 123 3 0 chr15 62036834 62037136 -23658618 + AluSg SINE Alu 1 303 -7 402 21 0 0 chr15 62037292 62037339 -23658415 + (CA)n Simple_repeat Simple_repeat 2 48 0 2048 92 14 38 chr15 62038468 62038760 -23656994 + AluSx SINE Alu 3 287 -25 1211 96 6 0 chr15 62038760 62038916 -23656838 - AluSq SINE Alu -156 157 1 432 0 0 0 chr15 62040012 62040060 -23655694 + (TG)n Simple_repeat Simple_repeat 2 49 0 243 282 70 14 chr15 62040361 62040432 -23655322 + MIR SINE MIR 11 85 -177 219 69 0 0 chr15 62040458 62040487 -23655267 + (T)n Simple_repeat Simple_repeat 1 29 0 217 317 79 0 chr15 62041257 62041358 -23654396 + MIR SINE MIR 84 192 -70 225 94 0 0 chr15 62044092 62044124 -23651630 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 62045617 62045639 -23650115 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 62046192 62046221 -23649533 + AT_rich Low_complexity Low_complexity 1 29 0 275 315 0 0 chr15 62048497 62048662 -23647092 + A-rich Low_complexity Low_complexity 1 165 0 276 309 169 0 chr15 62049446 62049582 -23646172 - MIR SINE MIR -6 256 98 2002 139 6 28 chr15 62049634 62049951 -23645803 - AluSx SINE Alu -1 311 2 189 217 4 0 chr15 62050487 62050532 -23645222 - MIR SINE MIR -62 146 100 290 343 0 6 chr15 62050806 62050984 -23644770 + CT-rich Low_complexity Low_complexity 2 178 0 247 271 0 0 chr15 62051833 62051892 -23643862 - MIR SINE MIR -56 152 94 1971 93 8 4 chr15 62052520 62052777 -23642977 - AluSq SINE Alu -55 258 1 325 231 130 28 chr15 62053988 62054096 -23641658 + L1MC4 LINE L1 6582 6700 -1342 301 276 41 65 chr15 62054029 62054152 -23641602 - L1MCa LINE L1 -4362 2064 1945 * 473 236 110 33 chr15 62054348 62054530 -23641224 - MIR SINE MIR -31 231 36 253 289 21 21 chr15 62054620 62054717 -23641037 + MIR SINE MIR 41 137 -71 408 88 0 0 chr15 62054834 62054891 -23640863 + (TG)n Simple_repeat Simple_repeat 2 58 0 211 162 0 59 chr15 62055839 62055907 -23639847 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 446 222 143 8 chr15 62056100 62056226 -23639528 - MIR3 SINE MIR -49 159 17 221 240 0 0 chr15 62056788 62056838 -23638916 + (CA)n Simple_repeat Simple_repeat 1 50 0 183 156 0 0 chr15 62057333 62057365 -23638389 + GA-rich Low_complexity Low_complexity 3 34 0 204 241 0 19 chr15 62057377 62057431 -23638323 + GA-rich Low_complexity Low_complexity 2 54 0 213 254 0 82 chr15 62057850 62057972 -23637782 + GA-rich Low_complexity Low_complexity 6 117 0 185 290 65 21 chr15 62058184 62058277 -23637477 + MIR3 SINE MIR 81 177 -31 10629 191 57 6 chr15 62059333 62061893 -23633861 - HERVK LTR ERVK -1746 5497 2807 2334 83 7 0 chr15 62063002 62063303 -23632451 - AluY SINE Alu -8 303 1 405 274 34 0 chr15 62063305 62063422 -23632332 - Charlie8 DNA MER1_type -2263 154 34 450 270 40 13 chr15 62063674 62063826 -23631928 + MER103 DNA DNA 10 165 -1 271 310 80 44 chr15 62064663 62064889 -23630865 + L2 LINE L2 3012 3245 -27 955 139 15 0 chr15 62065516 62065653 -23630101 + AluJb SINE Alu 158 296 -16 * 1863 176 164 45 chr15 62065651 62066224 -23629530 + Charlie1 DNA MER1_type 1580 2220 -541 1321 167 0 9 chr15 62066228 62066455 -23629299 + AluJb SINE Alu 87 311 -1 725 221 236 12 chr15 62066478 62066804 -23628950 + Charlie1 DNA MER1_type 2363 2761 0 2194 121 0 0 chr15 62067281 62067571 -23628183 + AluSq SINE Alu 1 290 -23 2146 123 7 0 chr15 62068897 62069198 -23626556 + AluSg SINE Alu 1 303 -7 486 0 0 0 chr15 62069362 62069416 -23626338 + (CA)n Simple_repeat Simple_repeat 2 55 0 933 97 30 8 chr15 62070544 62070678 -23625076 + AluSq/x SINE Alu 3 139 -174 387 127 0 0 chr15 62071623 62071686 -23624068 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr15 62073169 62073191 -23622563 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 62073744 62073773 -23621981 + AT_rich Low_complexity Low_complexity 1 29 0 2049 144 29 29 chr15 62074609 62074984 -23620770 - THE1C LTR MaLR 0 375 1 959 234 160 27 chr15 62125525 62125893 -23569861 + L1ME4a LINE L1 4787 5203 -943 558 158 169 0 chr15 62125897 62126027 -23569727 + L1MC3 LINE L1 6093 6219 -1566 293 253 166 76 chr15 62126050 62126509 -23569245 - L1MC/D LINE L1 -2037 5771 5272 975 193 104 0 chr15 62126545 62126757 -23568997 - LTR9B LTR ERV1 0 644 411 2194 98 17 3 chr15 62127036 62127333 -23568421 + AluSx SINE Alu 1 301 -11 441 309 121 53 chr15 62127412 62127826 -23567928 + L1ME4a LINE L1 5676 6117 -4 2096 123 3 0 chr15 62128631 62128933 -23566821 + AluSg SINE Alu 1 303 -7 504 0 0 0 chr15 62129090 62129146 -23566608 + (CA)n Simple_repeat Simple_repeat 1 56 0 1896 92 14 38 chr15 62130275 62130567 -23565187 + AluSx SINE Alu 3 287 -25 1128 96 6 0 chr15 62130567 62130723 -23565031 - AluSq SINE Alu -156 157 1 414 0 0 0 chr15 62131817 62131863 -23563891 + (TG)n Simple_repeat Simple_repeat 2 47 0 259 291 165 10 chr15 62132164 62132267 -23563487 + MIR SINE MIR 11 129 -133 219 317 79 0 chr15 62133055 62133156 -23562598 + MIR SINE MIR 84 192 -70 333 68 0 0 chr15 62135899 62135943 -23559811 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr15 62137434 62137456 -23558298 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 62138009 62138038 -23557716 + AT_rich Low_complexity Low_complexity 1 29 0 2050 144 29 29 chr15 62138874 62139249 -23556505 - THE1C LTR MaLR 0 375 1 1932 238 80 15 chr15 62139818 62140403 -23555351 + LTR5 LTR ERVK 1 623 -346 25 0 0 0 chr15 62140475 62140500 -23555254 + AT_rich Low_complexity Low_complexity 1 25 0 1641 263 59 21 chr15 62140500 62141123 -23554631 - HERVK LTR ERVK -1111 6132 5533 11450 188 57 6 chr15 62141357 62143952 -23551802 - HERVK LTR ERVK -1709 5534 2807 2176 83 7 0 chr15 62145061 62145362 -23550392 - AluY SINE Alu -8 303 1 414 274 34 0 chr15 62145364 62145481 -23550273 - Charlie8 DNA MER1_type -2252 165 45 449 270 40 13 chr15 62145733 62145885 -23549869 + MER103 DNA DNA 10 165 -1 188 281 54 49 chr15 62146089 62146292 -23549462 - L2 LINE L2 -653 2661 2458 320 289 87 64 chr15 62146638 62146949 -23548805 + L2 LINE L2 2928 3245 -27 183 280 65 21 chr15 62149656 62149749 -23546005 - MIR3 SINE MIR -31 177 81 236 244 24 71 chr15 62149957 62150084 -23545670 + CT-rich Low_complexity Low_complexity 6 126 0 204 241 0 19 chr15 62150503 62150557 -23545197 + CT-rich Low_complexity Low_complexity 2 54 0 183 156 0 0 chr15 62150569 62150601 -23545153 + CT-rich Low_complexity Low_complexity 3 34 0 221 240 0 0 chr15 62151096 62151146 -23544608 + (TG)n Simple_repeat Simple_repeat 1 50 0 492 236 129 7 chr15 62151697 62151837 -23543917 + MIR3 SINE MIR 3 159 -49 211 162 0 59 chr15 62152030 62152098 -23543656 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 227 269 48 39 chr15 62152170 62152274 -23543480 - MER113 DNA MER1_type? -399 122 18 408 88 0 0 chr15 62153045 62153102 -23542652 + (CA)n Simple_repeat Simple_repeat 2 58 0 259 289 21 21 chr15 62153219 62153316 -23542438 - MIR SINE MIR -71 137 41 501 236 110 33 chr15 62153406 62153588 -23542166 + MIR SINE MIR 36 231 -31 327 231 130 28 chr15 62153840 62153948 -23541806 - L1MC4 LINE L1 -1342 6700 6582 2250 102 0 0 chr15 62155159 62155464 -23540290 + AluSq SINE Alu 1 305 -8 186 164 0 127 chr15 62155789 62155844 -23539910 + L2 LINE L2 3257 3304 -9 204 255 0 0 chr15 62155883 62155930 -23539824 + A-rich Low_complexity Low_complexity 1 47 0 199 267 53 40 chr15 62157315 62157390 -23538364 - L2 LINE L2 -4 3309 3234 537 220 30 23 chr15 62157650 62157782 -23537972 + MER94 DNA DNA 2 134 0 236 270 226 50 chr15 62158976 62159135 -23536619 - L2 LINE L2 -182 3090 2904 250 350 40 0 chr15 62159309 62159409 -23536345 + MIR SINE MIR 45 148 -60 251 295 160 39 chr15 62159598 62159754 -23536000 + MIR SINE MIR 83 257 -5 1587 113 154 4 chr15 62159800 62160047 -23535707 + AluSq SINE Alu 1 284 -19 370 78 16 16 chr15 62160884 62160948 -23534806 + (CCTG)n Simple_repeat Simple_repeat 3 66 0 185 260 50 90 chr15 62161727 62161827 -23533927 - MIR3 SINE MIR -29 179 84 228 67 0 0 chr15 62162346 62162376 -23533378 + (GA)n Simple_repeat Simple_repeat 1 30 0 2213 95 0 0 chr15 62163874 62164170 -23531584 - AluY SINE Alu -15 296 1 1016 183 50 15 chr15 62164232 62164434 -23531320 - AluJo SINE Alu -18 294 86 28 61 0 0 chr15 62164897 62164946 -23530808 + AT_rich Low_complexity Low_complexity 1 49 0 26 64 0 0 chr15 62166172 62166219 -23529535 + AT_rich Low_complexity Low_complexity 1 47 0 2214 80 0 0 chr15 62166224 62166499 -23529255 + AluSc SINE Alu 1 275 -34 2234 92 7 0 chr15 62166714 62167009 -23528745 - AluSg SINE Alu -13 297 1 956 287 119 14 chr15 62167063 62167484 -23528270 - L1ME3A LINE L1 -300 5870 5406 270 0 0 0 chr15 62168882 62168912 -23526842 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr15 62169561 62169586 -23526168 + AT_rich Low_complexity Low_complexity 1 25 0 348 262 201 7 chr15 62169814 62169963 -23525791 + MIR SINE MIR 84 261 -1 578 298 107 52 chr15 62170215 62170590 -23525164 + L1M4 LINE L1 3629 4041 -2105 300 53 0 0 chr15 62170590 62170628 -23525126 + (CA)n Simple_repeat Simple_repeat 2 39 0 578 298 107 52 chr15 62170628 62170755 -23524999 + L1M4 LINE L1 4041 4159 -1987 338 155 42 28 chr15 62170840 62170911 -23524843 + L1MB2 LINE L1 6093 6164 -7 2331 91 3 7 chr15 62171019 62171327 -23524427 - AluSq SINE Alu -6 307 1 21 57 0 0 chr15 62171425 62171460 -23524294 + AT_rich Low_complexity Low_complexity 1 35 0 778 217 13 0 chr15 62171627 62171784 -23523970 + MER3 DNA MER1_type 51 209 0 285 333 90 38 chr15 62171861 62172330 -23523424 + L1ME3 LINE L1 3725 4217 -1929 342 0 0 0 chr15 62172608 62172646 -23523108 + (CA)n Simple_repeat Simple_repeat 1 38 0 1360 277 51 10 chr15 62173479 62173864 -23521890 + MLT1G1 LTR MaLR 1 464 -131 2126 118 14 0 chr15 62173864 62174160 -23521594 + AluSq SINE Alu 1 300 -13 1360 277 51 10 chr15 62174160 62174298 -23521456 + MLT1G1 LTR MaLR 464 595 0 381 279 100 50 chr15 62175216 62175356 -23520398 - MIR3 SINE MIR -31 177 31 356 259 185 65 chr15 62175661 62176013 -23519741 + MLT1J LTR MaLR 112 505 -6 1096 288 81 39 chr15 62178884 62180467 -23515287 + L1ME3 LINE L1 4283 5946 -216 2393 218 43 27 chr15 62180528 62181112 -23514642 + MLT1E LTR MaLR 1 593 0 419 245 104 67 chr15 62184614 62184883 -23510871 - L3 LINE CR1 -144 1433 1155 759 269 37 14 chr15 62185034 62185250 -23510504 - MIR SINE MIR -36 226 6 265 250 0 56 chr15 62185475 62185547 -23510207 - L2 LINE L2 -23 3290 3223 213 224 0 0 chr15 62186653 62186711 -23509043 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 216 283 17 0 chr15 62186728 62186788 -23508966 + (TTCA)n Simple_repeat Simple_repeat 2 62 0 304 174 153 10 chr15 62187073 62187171 -23508583 + MER113 DNA MER1_type? 15 126 -395 286 325 64 39 chr15 62187341 62187544 -23508210 - L2 LINE L2 -557 2757 2550 2673 245 44 75 chr15 62188874 62189022 -23506732 - L2 LINE L2 -563 2751 2600 2176 112 0 3 chr15 62189022 62189316 -23506438 - AluSc SINE Alu -16 293 1 2673 245 44 75 chr15 62189316 62190147 -23505607 - L2 LINE L2 -714 2600 1803 468 251 216 0 chr15 62192885 62193056 -23502698 - MIR SINE MIR -52 210 3 252 218 90 0 chr15 62193091 62193169 -23502585 + L1ME4a LINE L1 5838 5922 -199 22 0 0 0 chr15 62193777 62193799 -23501955 + AT_rich Low_complexity Low_complexity 1 22 0 306 261 43 33 chr15 62195317 62195409 -23500345 - MIR3 SINE MIR -16 192 100 372 355 89 23 chr15 62196110 62196324 -23499430 + MIR SINE MIR 21 248 -14 4631 205 38 44 chr15 62196530 62197881 -23497873 + L1MD1 LINE L1 3813 5171 -1071 2224 101 0 10 chr15 62197881 62198178 -23497576 + AluSx SINE Alu 1 294 -18 183 42 0 0 chr15 62198181 62198205 -23497549 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4631 205 38 44 chr15 62198205 62199299 -23496455 + L1MD1 LINE L1 5173 6242 0 466 312 57 91 chr15 62200452 62200824 -23494930 + L2 LINE L2 2914 3272 0 1872 173 3 0 chr15 62201512 62201813 -23493941 + AluSx SINE Alu 1 302 -10 479 261 73 36 chr15 62202363 62202528 -23493226 - MIR SINE MIR -2 260 90 225 265 12 12 chr15 62202701 62202784 -23492970 - MIR SINE MIR -7 255 173 323 222 0 0 chr15 62202825 62202888 -23492866 - MER81 DNA DNA -31 83 21 791 164 60 0 chr15 62203127 62203261 -23492493 - MER46A DNA MER2_type -94 142 1 598 270 23 11 chr15 62203375 62203549 -23492205 - MIR SINE MIR -10 252 77 226 353 71 0 chr15 62203564 62203649 -23492105 - MIR SINE MIR -164 98 8 252 271 84 9 chr15 62203651 62203758 -23491996 + MER117 DNA MER1_type 5 119 -78 374 240 73 0 chr15 62204731 62204827 -23490927 - MER103 DNA DNA -50 116 14 1706 146 37 24 chr15 62205921 62206216 -23489538 - AluJo SINE Alu -11 301 3 326 232 16 80 chr15 62206363 62206429 -23489325 - L2 LINE L2 -2726 588 532 1739 165 38 10 chr15 62206429 62206720 -23489034 + AluJo SINE Alu 1 299 -13 326 232 16 80 chr15 62206720 62206778 -23488976 - L2 LINE L2 -2782 532 472 368 354 233 22 chr15 62207279 62208582 -23487172 - L2 LINE L2 -1560 1754 177 346 275 88 50 chr15 62208782 62208942 -23486812 + MIR SINE MIR 49 214 -48 354 275 188 24 chr15 62209484 62209691 -23486063 + Charlie8 DNA MER1_type 3 243 -2174 24 32 0 0 chr15 62209908 62209939 -23485815 + AT_rich Low_complexity Low_complexity 1 31 0 597 235 50 0 chr15 62210034 62210153 -23485601 + FLAM_C SINE Alu 1 125 -18 294 194 20 10 chr15 62210159 62210257 -23485497 + (TA)n Simple_repeat Simple_repeat 1 99 0 25 0 0 0 chr15 62210263 62210288 -23485466 + AT_rich Low_complexity Low_complexity 1 25 0 2107 116 30 0 chr15 62211795 62212098 -23483656 + AluSx SINE Alu 1 312 0 2353 75 0 29 chr15 62212103 62212410 -23483344 + AluY SINE Alu 1 298 -13 234 159 0 0 chr15 62212545 62212589 -23483165 + L1MB7 LINE L1 6132 6175 -9 635 256 116 28 chr15 62213004 62213468 -23482286 - L1ME4a LINE L1 -1 6120 5616 764 183 0 0 chr15 62214058 62214189 -23481565 - FLAM_C SINE Alu 0 133 3 2308 123 0 0 chr15 62214222 62214532 -23481222 - AluSx SINE Alu -2 310 1 320 329 107 32 chr15 62215157 62215504 -23480250 + L2 LINE L2 1741 2113 -1201 698 270 116 29 chr15 62215799 62216753 -23479001 - L1ME3A LINE L1 -233 5937 4885 210 91 0 0 chr15 62216898 62216931 -23478823 + (TTG)n Simple_repeat Simple_repeat 1 33 0 807 194 14 0 chr15 62216933 62217077 -23478677 - FRAM SINE Alu -30 146 1 1641 283 68 43 chr15 62217226 62218188 -23477566 - L1ME3A LINE L1 -1954 4192 3207 413 253 93 44 chr15 62218350 62218377 -23477377 - L1ME3A LINE L1 -2893 3253 3229 978 146 52 38 chr15 62218377 62218589 -23477165 - L1MC2 LINE L1 -10 6334 6120 413 253 93 44 chr15 62218589 62218743 -23477011 - L1ME3A LINE L1 -2917 3229 3063 1744 159 21 17 chr15 62219077 62219367 -23476387 + AluJb SINE Alu 11 301 -11 412 283 42 8 chr15 62221133 62221253 -23474501 + L2 LINE L2 3186 3309 -4 360 279 188 7 chr15 62221796 62221950 -23473804 - MIR SINE MIR -64 198 17 240 100 0 100 chr15 62222421 62222481 -23473273 + AluSp/q SINE Alu 241 294 -9 248 103 29 88 chr15 62225031 62225099 -23470655 + T-rich Low_complexity Low_complexity 3 66 0 2243 110 30 0 chr15 62225241 62225541 -23470213 - AluSc SINE Alu 0 309 1 32048 64 5 11 chr15 62225616 62226953 -23468801 - L1PA6 LINE L1 0 6154 4810 2200 52 48 0 chr15 62226953 62227247 -23468507 - AluY SINE Alu 0 307 1 32048 64 5 11 chr15 62227247 62231257 -23464497 - L1PA6 LINE L1 -1344 4810 847 581 94 12 0 chr15 62231257 62231342 -23464412 - L1PA6 LINE L1 -6050 96 11 265 297 81 9 chr15 62231477 62231588 -23464166 - LTR67 LTR ERVL 0 557 439 641 351 88 41 chr15 62232650 62232669 -23463085 + L2 LINE L2 2589 2606 -666 1570 89 22 13 chr15 62232669 62232894 -23462860 + MER30 DNA MER1_type 4 230 0 641 351 88 41 chr15 62232894 62233514 -23462240 + L2 LINE L2 2606 3270 -2 22 35 0 0 chr15 62233600 62233629 -23462125 + AT_rich Low_complexity Low_complexity 1 29 0 1655 123 14 27 chr15 62233694 62234044 -23461710 - MER4A LTR ERV1 0 664 261 636 111 0 10 chr15 62234044 62234143 -23461611 - MER4A LTR ERV1 -566 98 1 384 340 78 13 chr15 62234413 62234566 -23461188 - MER5A DNA MER1_type -3 186 24 293 312 25 45 chr15 62234574 62234731 -23461023 - L2 LINE L2 -41 3272 3119 1522 303 98 66 chr15 62235678 62237155 -23458599 - L2 LINE L2 -1 3271 1758 1030 171 24 15 chr15 62237349 62237554 -23458200 + L1MA10 LINE L1 4714 4920 -1226 3023 195 42 28 chr15 62237561 62237683 -23458071 + L1PA16 LINE L1 2744 2863 -4006 2171 97 36 0 chr15 62237683 62237961 -23457793 - AluSx SINE Alu -24 288 1 3023 195 42 28 chr15 62237961 62238768 -23456986 + L1PA16 LINE L1 2863 3657 -3212 2174 106 3 3 chr15 62238768 62239060 -23456694 + AluSg SINE Alu 1 292 -18 3023 195 42 28 chr15 62239060 62239613 -23456141 + L1PA16 LINE L1 3657 4201 -2668 207 0 0 0 chr15 62239613 62239636 -23456118 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3023 195 42 28 chr15 62239636 62241991 -23453763 + L1PA16 LINE L1 4201 6864 -5 2617 207 108 17 chr15 62241991 62243260 -23452494 + L1MA10 LINE L1 4912 6295 -39 983 251 128 68 chr15 62244339 62245307 -23450447 + L1MEd LINE L1 1153 2213 -4097 426 252 33 0 chr15 62245320 62245471 -23450283 + L1MEd LINE L1 3321 3476 -2653 1032 296 31 15 chr15 62245530 62245986 -23449768 + L1MCc LINE L1 32 494 -5929 524 135 0 0 chr15 62246230 62246319 -23449435 + L1MCc LINE L1 821 909 -5514 2530 231 75 1 chr15 62246347 62247182 -23448572 + L1M4 LINE L1 2430 3326 -2820 521 293 113 17 chr15 62247425 62247664 -23448090 - L2 LINE L2 -923 2391 2130 24 35 0 53 chr15 62251118 62251143 -23444611 + AT_rich Low_complexity Low_complexity 1 26 -28 2416 80 0 0 chr15 62251143 62251444 -23444310 - AluY SINE Alu -10 301 1 24 35 0 53 chr15 62251444 62251475 -23444279 + AT_rich Low_complexity Low_complexity 26 54 0 1494 175 82 8 chr15 62251969 62252237 -23443517 - AluJo SINE Alu -24 288 1 260 261 31 0 chr15 62252265 62252330 -23443424 + MIR SINE MIR 78 144 -64 24 0 0 0 chr15 62252947 62252971 -23442783 + AT_rich Low_complexity Low_complexity 1 24 0 318 304 96 30 chr15 62253571 62253706 -23442048 - L2 LINE L2 -204 3068 2925 1317 117 29 0 chr15 62254077 62254282 -23441472 + L1MC1 LINE L1 6118 6328 -5 2228 126 7 0 chr15 62254811 62255121 -23440633 - AluSx SINE Alu 0 312 1 269 167 0 64 chr15 62255219 62255297 -23440457 + L1ME1 LINE L1 5299 5371 -973 1945 176 89 12 chr15 62255297 62255724 -23440030 - MLT1C LTR MaLR 0 467 8 2202 227 90 61 chr15 62255729 62256791 -23438963 + L1ME1 LINE L1 5364 6088 -78 3267 78 18 0 chr15 62256791 62257237 -23438517 + L1PA10 LINE L1 5705 6158 -10 2202 227 90 61 chr15 62257237 62257302 -23438452 + L1ME1 LINE L1 6088 6150 -16 3387 126 44 22 chr15 62257365 62258224 -23437530 + L1MCa LINE L1 990 1958 -4468 12178 34 2 0 chr15 62258294 62260527 -23435227 - L1PA4 LINE L1 -1 6154 3915 8629 83 5 0 chr15 62260527 62261748 -23434006 - L1P LINE L1 -4919 1227 1 2762 220 35 50 chr15 62261755 62262113 -23433641 + L1MCa LINE L1 3028 3390 -3036 2155 136 0 0 chr15 62262113 62262414 -23433340 + AluSx SINE Alu 1 301 -11 1630 178 34 17 chr15 62262424 62262751 -23433003 + AluSx SINE Alu 7 312 0 2762 220 35 50 chr15 62262751 62263329 -23432425 + L1MCa LINE L1 3399 3926 -2500 2153 119 3 0 chr15 62263329 62263631 -23432123 + AluSx SINE Alu 1 303 -9 2762 220 35 50 chr15 62263631 62263796 -23431958 + L1MCa LINE L1 3926 4092 -2334 1252 115 25 10 chr15 62263802 62264002 -23431752 + L1MC1 LINE L1 6131 6333 0 452 272 35 6 chr15 62265119 62265292 -23430462 + (CCCTAA)n Simple_repeat Simple_repeat 3 180 0 356 277 62 68 chr15 62269406 62269583 -23426171 - MER5B DNA MER1_type 0 178 3 317 241 131 73 chr15 62270155 62270346 -23425408 - HAL1 LINE L1 -1164 1343 1142 668 306 13 84 chr15 62270351 62270467 -23425287 - L2 LINE L2 -390 2924 2801 2218 125 6 6 chr15 62270467 62270778 -23424976 - AluSx SINE Alu -1 311 1 668 306 13 84 chr15 62270778 62271044 -23424710 - L2 LINE L2 -513 2801 2569 713 267 131 35 chr15 62271108 62271565 -23424189 + L1MC4a LINE L1 5405 5905 -1903 205 255 0 20 chr15 62271658 62271709 -23424045 - L2 LINE L2 -1903 1411 1362 204 272 201 31 chr15 62271899 62272094 -23423660 - MIR3 SINE MIR -16 246 15 277 341 0 38 chr15 62272131 62272263 -23423491 + MLT1J LTR MaLR 327 453 -58 2478 124 11 21 chr15 62273041 62273420 -23422334 - THE1C LTR MaLR 0 375 1 11309 106 11 46 chr15 62273420 62275058 -23420696 - THE1C-int LTR MaLR 0 1580 1 2491 109 21 44 chr15 62275058 62275442 -23420312 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr15 62275661 62275689 -23420065 + AT_rich Low_complexity Low_complexity 1 28 0 3396 184 95 61 chr15 62275892 62276426 -23419328 - L1MB8 LINE L1 0 6178 5664 2258 80 49 0 chr15 62276426 62276714 -23419040 - AluY SINE Alu -9 302 1 3396 184 95 61 chr15 62276714 62277871 -23417883 - L1MB8 LINE L1 -514 5664 4457 377 368 77 27 chr15 62277944 62278346 -23417408 - L1 LINE L1 -1318 4828 4407 254 282 223 19 chr15 62279147 62279250 -23416504 + L3 LINE CR1 1242 1365 -212 349 347 20 20 chr15 62279338 62279488 -23416266 - MIR SINE MIR -111 151 2 1926 222 50 24 chr15 62279564 62279885 -23415869 + Charlie4a DNA MER1_type 1 341 -1620 2280 81 0 3 chr15 62279885 62280182 -23415572 - AluY SINE Alu -14 297 2 1926 222 50 24 chr15 62280182 62280355 -23415399 + Charlie4a DNA MER1_type 341 508 0 211 196 0 22 chr15 62280360 62280406 -23415348 + MIR3 SINE MIR 143 187 -21 584 357 63 41 chr15 62280958 62281417 -23414337 - L2 LINE L2 0 3272 2804 382 274 32 0 chr15 62281441 62281536 -23414218 - L2 LINE L2 0 3272 3175 24 0 0 0 chr15 62281648 62281672 -23414082 + AT_rich Low_complexity Low_complexity 1 24 0 276 317 29 29 chr15 62281678 62281782 -23413972 - MIR SINE MIR -11 251 148 289 330 0 20 chr15 62281877 62281977 -23413777 - L2 LINE L2 -672 2642 2545 215 263 138 0 chr15 62281999 62282079 -23413675 - L2 LINE L2 -886 2428 2338 184 318 30 15 chr15 62282131 62282197 -23413557 + MER5A DNA MER1_type 108 174 -15 491 278 253 0 chr15 62282282 62282480 -23413274 + MIR SINE MIR 12 259 -3 25 0 0 0 chr15 62283689 62283714 -23412040 + AT_rich Low_complexity Low_complexity 1 25 0 416 295 150 21 chr15 62283720 62283913 -23411841 - MIR SINE MIR -11 251 34 2720 208 96 29 chr15 62283986 62284241 -23411513 - L1ME2 LINE L1 0 6164 5928 2224 109 0 3 chr15 62284241 62284545 -23411209 - AluSg SINE Alu -7 303 1 2720 208 96 29 chr15 62284545 62285041 -23410713 - L1ME2 LINE L1 -236 5928 5299 429 20 0 0 chr15 62285041 62285091 -23410663 + (TG)n Simple_repeat Simple_repeat 1 50 0 2720 208 96 29 chr15 62285091 62285302 -23410452 - L1ME2 LINE L1 -865 5299 5104 549 328 173 19 chr15 62285318 62285843 -23409911 + L2 LINE L2 2709 3312 -1 251 196 0 0 chr15 62285900 62285951 -23409803 + (TG)n Simple_repeat Simple_repeat 2 52 0 241 287 136 104 chr15 62286155 62286406 -23409348 + L2 LINE L2 3014 3272 0 2480 81 0 0 chr15 62286740 62287050 -23408704 + AluY SINE Alu 1 310 -1 2351 93 0 0 chr15 62288913 62289203 -23406551 + AluSc SINE Alu 1 290 -19 1527 155 30 4 chr15 62290361 62290625 -23405129 - AluJb SINE Alu -2 310 40 1963 221 69 89 chr15 62291397 62292034 -23403720 + MLT1E2 LTR MaLR 1 626 0 251 295 95 11 chr15 62292151 62292246 -23403508 - MIR SINE MIR -146 116 14 570 299 46 12 chr15 62292260 62292584 -23403170 - L1ME2 LINE L1 -1703 4443 4109 716 117 0 18 chr15 62292670 62292781 -23402973 + MLT1A1 LTR MaLR 257 365 0 300 212 0 80 chr15 62292932 62293045 -23402709 - L1ME2 LINE L1 -3115 3031 2928 226 333 15 0 chr15 62293045 62293111 -23402643 - L2 LINE L2 -17 3296 3230 252 180 49 0 chr15 62293489 62293550 -23402204 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 181 250 77 0 chr15 62293616 62293668 -23402086 + L2 LINE L2 3217 3272 0 325 267 0 0 chr15 62294305 62294380 -23401374 - L2 LINE L2 -317 2996 2922 1831 174 32 8 chr15 62294444 62294824 -23400930 + Charlie4a DNA MER1_type 80 468 -40 3761 242 77 37 chr15 62294827 62295763 -23399991 - L2 LINE L2 -388 2926 1932 1993 98 67 14 chr15 62295763 62296048 -23399706 + AluSx SINE Alu 1 300 -12 3761 242 77 37 chr15 62296048 62296284 -23399470 - L2 LINE L2 -1382 1932 1707 694 213 65 100 chr15 62296297 62296527 -23399227 + L2 LINE L2 2602 2823 -491 588 246 0 93 chr15 62296552 62296587 -23399167 + MLT1K LTR MaLR 390 427 -161 957 198 56 0 chr15 62296587 62296749 -23399005 - FAM SINE Alu -4 171 1 588 246 0 93 chr15 62296749 62296928 -23398826 + MLT1K LTR MaLR 427 584 -4 339 209 183 39 chr15 62297150 62297303 -23398451 + L2 LINE L2 2220 2394 -920 21 0 0 0 chr15 62297758 62297779 -23397975 + AT_rich Low_complexity Low_complexity 1 21 0 205 307 80 44 chr15 62299256 62299393 -23396361 + L2 LINE L2 2894 3035 -237 582 214 0 9 chr15 62299780 62299892 -23395862 + MER5B DNA MER1_type 1 111 -67 1635 151 31 71 chr15 62300907 62301231 -23394523 + AluJo SINE Alu 1 311 -1 264 350 25 17 chr15 62302609 62302729 -23393025 + MIR SINE MIR 31 151 -111 425 350 52 37 chr15 62303142 62303455 -23392299 + L2 LINE L2 2694 3008 -264 180 315 110 0 chr15 62303600 62303673 -23392081 + L2 LINE L2 3191 3271 -1 534 287 59 12 chr15 62304742 62305148 -23390606 + L1ME4a LINE L1 5601 6121 0 344 310 117 12 chr15 62305168 62305339 -23390415 + MIR3 SINE MIR 15 203 -5 2142 108 11 0 chr15 62305689 62305975 -23389779 - AluSx SINE Alu -10 302 14 287 362 71 0 chr15 62306273 62306400 -23389354 - MIR3 SINE MIR -13 195 60 2180 115 0 3 chr15 62306541 62306852 -23388902 - AluSq SINE Alu 0 310 1 581 236 95 86 chr15 62307044 62307350 -23388404 - L1ME LINE L1 -484 5637 5335 2600 65 0 0 chr15 62307350 62307656 -23388098 - AluY SINE Alu -3 308 3 581 236 95 86 chr15 62307656 62307832 -23387922 - L1ME LINE L1 -786 5335 5162 549 136 59 17 chr15 62307832 62307950 -23387804 - L1MB7 LINE L1 0 6184 6062 581 236 95 86 chr15 62307950 62308099 -23387655 - L1ME LINE L1 -959 5162 4974 444 272 90 39 chr15 62308166 62308445 -23387309 - L1ME LINE L1 -1282 4864 4572 655 253 53 35 chr15 62308600 62308885 -23386869 - L1ME LINE L1 -1980 4166 3877 638 275 157 22 chr15 62308892 62309216 -23386538 + LTR16A LTR ERVL 1 368 -82 2196 115 0 40 chr15 62309248 62309570 -23386184 + AluSx SINE Alu 1 309 -3 284 317 129 0 chr15 62310853 62310954 -23384800 - MIR SINE MIR -58 150 37 212 244 0 0 chr15 62313249 62313294 -23382460 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 196 343 52 45 chr15 62313640 62313774 -23381980 - L2 LINE L2 -15 3257 3123 333 256 72 32 chr15 62313909 62314034 -23381720 + MIR3 SINE MIR 38 167 -41 1033 208 33 0 chr15 62314762 62314945 -23380809 + MER5A DNA MER1_type 1 189 0 2480 32 0 3 chr15 62314976 62315259 -23380495 + AluY SINE Alu 1 326 0 216 91 0 23 chr15 62315259 62315303 -23380451 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr15 62316213 62316241 -23379513 + AT_rich Low_complexity Low_complexity 1 28 0 866 323 93 24 chr15 62316382 62316791 -23378963 + L2 LINE L2 2836 3272 0 189 322 8 74 chr15 62317871 62317956 -23377798 + MIR3 SINE MIR 83 159 -49 5626 190 87 47 chr15 62317956 62318227 -23377527 + Charlie1a DNA MER1_type 2 261 -2500 2129 121 17 0 chr15 62318227 62318524 -23377230 + AluSx SINE Alu 1 302 -10 5626 190 87 47 chr15 62318524 62319649 -23376105 + Charlie1a DNA MER1_type 261 1454 -1 189 322 8 74 chr15 62319649 62319684 -23376070 + MIR3 SINE MIR 159 195 -13 656 272 92 32 chr15 62322519 62322736 -23373018 + MIR SINE MIR 24 253 -9 638 257 40 34 chr15 62324063 62324238 -23371516 - MER5B DNA MER1_type -1 177 2 447 329 144 12 chr15 62326354 62326777 -23368977 + L2 LINE L2 1830 2308 -1006 1939 106 3 51 chr15 62326815 62327107 -23368647 - MER1B DNA MER1_type 0 339 62 448 281 86 58 chr15 62327269 62327473 -23368281 + L2 LINE L2 2127 2345 -969 2387 128 3 48 chr15 62327473 62327826 -23367928 - MER1B DNA MER1_type 0 337 1 448 281 86 58 chr15 62327826 62327948 -23367806 + L2 LINE L2 2345 2462 -852 3543 129 46 0 chr15 62327953 62328457 -23367297 + MER1A DNA MER1_type 1 527 0 583 214 2 41 chr15 62328522 62328701 -23367053 - MER63 DNA MER1_type -271 790 1 2556 56 7 3 chr15 62329506 62329809 -23365945 + AluY SINE Alu 1 304 -7 953 262 13 4 chr15 62330357 62330582 -23365172 - MIR SINE MIR 0 262 36 545 318 126 5 chr15 62332557 62332780 -23362974 + MIR SINE MIR 2 251 -11 274 95 54 14 chr15 62332861 62332935 -23362819 + (TA)n Simple_repeat Simple_repeat 2 78 0 2386 89 0 13 chr15 62333220 62333533 -23362221 - AluSc SINE Alu 0 309 1 210 143 0 0 chr15 62334496 62334531 -23361223 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 186 133 0 0 chr15 62334525 62334555 -23361199 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 * 3129 156 8 55 chr15 62334720 62335335 -23360419 - L1MA10 LINE L1 -4 6330 5745 2010 129 0 16 chr15 62335343 62335646 -23360108 - AluSg SINE Alu -12 298 1 12684 83 8 2 chr15 62335646 62338033 -23357721 - L1PA7 LINE L1 -5 6149 3735 32558 100 12 27 chr15 62338133 62344043 -23351711 - L1P3 LINE L1 -546 5923 3 1744 270 143 21 chr15 62344196 62344443 -23351311 - HAL1b LINE L1 -245 1103 887 2512 111 22 35 chr15 62344443 62344812 -23350942 - THE1B LTR MaLR 0 364 1 1744 270 143 21 chr15 62344812 62345452 -23350302 - HAL1b LINE L1 -461 887 108 1100 286 22 8 chr15 62347057 62347345 -23348409 - HAL1b LINE L1 -735 613 318 1861 121 70 11 chr15 62347345 62347618 -23348136 - AluSx SINE Alu -23 289 1 1100 286 22 8 chr15 62347618 62347685 -23348069 - HAL1b LINE L1 -1030 318 253 289 338 132 59 chr15 62348903 62349889 -23345865 + L2 LINE L2 2188 3272 0 263 71 24 0 chr15 62350060 62350102 -23345652 + (TG)n Simple_repeat Simple_repeat 2 44 0 20980 149 46 34 chr15 62350230 62351894 -23343860 + L1MA2 LINE L1 6 1649 -6074 237 83 0 0 chr15 62351894 62351930 -23343824 + (CAGAGA)n Simple_repeat Simple_repeat 1 36 0 20980 149 46 34 chr15 62351930 62353932 -23341822 + L1MA2 LINE L1 1649 3627 -4096 1223 135 0 0 chr15 62353932 62354102 -23341652 - AluSg/x SINE Alu -6 306 137 20980 149 46 34 chr15 62354102 62357893 -23337861 + L1MA2 LINE L1 3627 7723 0 315 0 0 0 chr15 62358315 62358350 -23337404 + (TG)n Simple_repeat Simple_repeat 2 36 0 852 212 79 0 chr15 62358370 62358559 -23337195 + MER63A DNA MER1_type 6 209 -1 414 265 170 14 chr15 62360877 62361024 -23334730 - MER5A DNA MER1_type -6 183 14 230 242 72 56 chr15 62361923 62362052 -23333702 - MIR SINE MIR -57 151 20 337 257 199 18 chr15 62362085 62362256 -23333498 + MIR SINE MIR 30 231 -31 1255 154 167 4 chr15 62362562 62362789 -23332965 + Tigger7 DNA MER2_type 1 264 -2223 601 196 10 0 chr15 62362787 62362889 -23332865 + Tigger7 DNA MER2_type 2485 2587 0 * 298 263 123 41 chr15 62363021 62363192 -23332562 + MIR3 SINE MIR 3 187 -21 337 205 0 48 chr15 62363519 62363602 -23332152 - MER96 DNA MER1_type? -93 82 4 560 295 21 21 chr15 62364719 62364912 -23330842 - L1ME LINE L1 -524 5597 5405 311 287 109 10 chr15 62365069 62365271 -23330483 + L1ME4a LINE L1 5732 5953 -168 34 0 0 0 chr15 62365677 62365711 -23330043 + AT_rich Low_complexity Low_complexity 1 34 0 347 300 71 57 chr15 62365820 62366103 -23329651 + L1 LINE L1 3496 3782 -2364 1683 198 39 8 chr15 62366113 62366472 -23329282 + MLT1A2 LTR MaLR 1 370 -4 1733 241 177 17 chr15 62366475 62366843 -23328911 + L1M4 LINE L1 2782 3090 -3056 2158 118 0 0 chr15 62366843 62367139 -23328615 + AluSx SINE Alu 1 296 -16 1733 241 177 17 chr15 62367139 62367782 -23327972 + L1M4 LINE L1 3090 3955 -2191 303 285 62 45 chr15 62368040 62368219 -23327535 + HAL1 LINE L1 1938 2119 -388 382 141 0 14 chr15 62368225 62368296 -23327458 - L1MB7 LINE L1 0 6184 6115 458 290 23 0 chr15 62368364 62368495 -23327259 + ERVL LTR ERVL 3375 3508 -2256 254 340 0 10 chr15 62368856 62368956 -23326798 + LTR67 LTR ERVL 459 557 0 5860 108 8 0 chr15 62369096 62370215 -23325539 - L1PA15 LINE L1 -7 6158 5027 309 244 67 0 chr15 62370832 62370922 -23324832 - MIR SINE MIR 0 262 167 243 284 172 29 chr15 62370971 62371319 -23324435 - L1MDa LINE L1 -4597 1532 1135 2316 152 28 0 chr15 62371573 62371962 -23323792 - L1PB4 LINE L1 -7 6149 5750 600 119 10 20 chr15 62372057 62372158 -23323596 - THE1C LTR MaLR -275 100 1 7735 116 28 37 chr15 62372166 62373456 -23322298 - THE1C-int LTR MaLR -12 1568 291 431 277 102 29 chr15 62373462 62373668 -23322086 - L1MDa LINE L1 -4974 1145 925 314 106 91 15 chr15 62373672 62373738 -23322016 + MER116 DNA Mariner 5 75 -5 493 252 106 22 chr15 62373831 62374057 -23321697 - L1MDa LINE L1 -5279 840 596 436 291 68 33 chr15 62374073 62374556 -23321198 - L1MDa LINE L1 -5581 538 4 276 295 141 12 chr15 62374565 62374806 -23320948 - HAL1 LINE L1 -888 1619 1348 309 306 81 23 chr15 62376527 62376700 -23319054 - MIR3 SINE MIR -7 201 19 192 286 33 33 chr15 62376849 62376940 -23318814 - L2 LINE L2 -313 2959 2869 342 161 0 0 chr15 62376976 62377069 -23318685 + (TCTCTG)n Simple_repeat Simple_repeat 6 98 0 1579 212 103 7 chr15 62377146 62377565 -23318189 + MLT1C LTR MaLR 1 459 -8 26 0 0 0 chr15 62377963 62377989 -23317765 + AT_rich Low_complexity Low_complexity 1 26 0 1253 197 3 118 chr15 62378454 62378794 -23316960 + AluJo SINE Alu 2 302 0 181 289 289 0 chr15 62378892 62379020 -23316734 + MIR3 SINE MIR 3 167 -41 2217 133 10 0 chr15 62379354 62379663 -23316091 + AluSx SINE Alu 1 312 0 2334 89 3 10 chr15 62379851 62380153 -23315601 + AluSq SINE Alu 1 300 -13 529 252 202 37 chr15 62380340 62380656 -23315098 + L2 LINE L2 2689 3063 -209 229 191 0 0 chr15 62382319 62382361 -23313393 - L2 LINE L2 -3 3310 3269 252 281 109 81 chr15 62383446 62383606 -23312148 - MIR SINE MIR -76 132 19 345 226 24 0 chr15 62384510 62384594 -23311160 + MLT1G1 LTR MaLR 1 86 -509 1205 149 10 15 chr15 62384864 62385065 -23310689 + AluJo SINE Alu 87 286 -26 26 30 0 0 chr15 62385764 62385797 -23309957 + AT_rich Low_complexity Low_complexity 1 33 0 1384 332 132 38 chr15 62386746 62388505 -23307249 + L2 LINE L2 1337 3263 -9 383 310 107 31 chr15 62388512 62388802 -23306952 + L1M4 LINE L1 4037 4348 -1798 247 271 113 72 chr15 62388833 62389054 -23306700 - MIR SINE MIR -7 255 26 461 32 32 0 chr15 62389289 62389351 -23306403 + (CATA)n Simple_repeat Simple_repeat 3 66 0 861 141 0 0 chr15 62389969 62390097 -23305657 - FLAM_C SINE Alu -1 132 5 244 296 80 0 chr15 62390366 62390454 -23305300 + MIR3 SINE MIR 112 206 -2 2102 200 81 4 chr15 62390747 62391251 -23304503 + L1MB8 LINE L1 5631 6173 -5 406 0 56 28 chr15 62391876 62391947 -23303807 + (CAAA)n Simple_repeat Simple_repeat 4 76 0 1307 207 70 3 chr15 62394293 62394592 -23301162 + MER58B DNA MER1_type 1 319 -22 263 350 6 6 chr15 62394704 62394867 -23300887 + MER103 DNA DNA 1 163 -3 200 197 42 28 chr15 62395396 62395467 -23300287 + (CATA)n Simple_repeat Simple_repeat 2 73 0 2317 92 0 16 chr15 62395825 62396129 -23299625 + AluSx SINE Alu 1 299 -13 25 31 0 0 chr15 62396355 62396387 -23299367 + AT_rich Low_complexity Low_complexity 1 32 0 404 230 13 79 chr15 62396766 62396852 -23298902 + L1ME1 LINE L1 6021 6094 -72 2290 107 0 3 chr15 62396852 62397152 -23298602 + AluSx SINE Alu 4 302 -10 404 230 13 79 chr15 62397152 62397217 -23298537 + L1ME1 LINE L1 6094 6162 -4 519 258 68 43 chr15 62397374 62397436 -23298318 + HAL1b LINE L1 259 318 -1030 2090 261 55 20 chr15 62397436 62398037 -23297717 + MLT1E2 LTR MaLR 5 626 0 519 258 68 43 chr15 62398037 62398253 -23297501 + HAL1b LINE L1 318 544 -804 283 190 17 0 chr15 62398257 62398315 -23297439 + MIR SINE MIR 132 190 -72 528 249 111 4 chr15 62398361 62398541 -23297213 - MIR SINE MIR 0 262 69 1625 155 40 0 chr15 62398763 62399060 -23296694 + L1PB4 LINE L1 5521 5829 -327 2022 119 14 14 chr15 62399061 62399354 -23296400 + AluSx SINE Alu 1 293 -19 984 169 0 38 chr15 62399648 62399831 -23295923 - AluJb SINE Alu -7 305 130 491 0 17 0 chr15 62400086 62400145 -23295609 + (TG)n Simple_repeat Simple_repeat 1 60 0 538 228 73 7 chr15 62400200 62400336 -23295418 - MIR SINE MIR -6 256 112 271 312 38 45 chr15 62400359 62400651 -23295103 + L1MB4 LINE L1 4490 4779 -1367 350 270 124 21 chr15 62400859 62401100 -23294654 + L1MB4 LINE L1 5477 5742 -379 327 265 32 82 chr15 62401108 62401327 -23294427 + L2 LINE L2 2686 2893 -421 658 247 89 0 chr15 62401627 62401817 -23293937 + MIR SINE MIR 56 262 0 2285 125 0 0 chr15 62402789 62403125 -23292629 - AluSx SINE Alu 0 336 1 1057 189 13 4 chr15 62403282 62403509 -23292245 + L1MB4 LINE L1 5952 6180 0 280 281 115 21 chr15 62403539 62403635 -23292119 - MER5B DNA MER1_type -48 130 26 601 206 73 32 chr15 62403661 62403908 -23291846 + L1MC5 LINE L1 7674 7930 -31 459 328 70 61 chr15 62403948 62404191 -23291563 - L2 LINE L2 -357 2957 2718 2227 104 0 3 chr15 62404191 62404488 -23291266 + AluSg SINE Alu 1 296 -14 459 328 70 61 chr15 62404488 62404772 -23290982 - L2 LINE L2 -596 2718 2425 213 351 79 18 chr15 62404963 62405077 -23290677 - MIR3 SINE MIR -3 205 85 645 334 83 33 chr15 62405750 62406112 -23289642 + L3 LINE CR1 1085 1464 -113 431 319 110 6 chr15 62406446 62406609 -23289145 - MIR3 SINE MIR -9 199 20 24 32 0 0 chr15 62407292 62407323 -23288431 + AT_rich Low_complexity Low_complexity 1 31 0 388 276 0 17 chr15 62408350 62408466 -23287288 + CT-rich Low_complexity Low_complexity 1 114 0 1266 185 55 62 chr15 62409113 62409535 -23286219 + MER69 DNA AcHobo 1954 2372 -154 2262 126 13 26 chr15 62409635 62410015 -23285739 + THE1C LTR MaLR 1 375 0 830 199 0 21 chr15 62410052 62410243 -23285511 - L1MC2 LINE L1 -5 6339 6153 692 204 36 0 chr15 62410302 62410469 -23285285 + MER69 DNA AcHobo 2352 2524 -2 259 316 112 10 chr15 62410498 62410694 -23285060 - MIR SINE MIR -18 244 29 331 228 22 0 chr15 62411189 62411281 -23284473 - MARNA DNA Mariner -209 377 284 2736 199 63 74 chr15 62411452 62412453 -23283301 + Charlie2 DNA MER1_type 1857 2846 -16 196 337 81 12 chr15 62412557 62412643 -23283111 + L2 LINE L2 2999 3090 -182 843 144 0 0 chr15 62413314 62413481 -23282273 + (CATTC)n Satellite Satellite 1 167 0 1110 159 0 4 chr15 62413494 62414001 -23281753 + (CATTC)n Satellite Satellite 1 505 0 1050 112 0 0 chr15 62414031 62414209 -23281545 + (CATTC)n Satellite Satellite 3 180 0 1026 162 0 5 chr15 62414225 62414564 -23281190 + (CATTC)n Satellite Satellite 1 337 0 1363 85 0 0 chr15 62414664 62414828 -23280926 - AluSc SINE Alu -139 170 7 1003 296 17 11 chr15 62414949 62415304 -23280450 + LTR16B LTR ERVL 108 464 0 249 236 34 34 chr15 62415519 62415608 -23280146 + L2 LINE L2 1216 1304 -2010 419 313 0 0 chr15 62415682 62415816 -23279938 + MER94 DNA DNA 1 134 0 900 131 0 0 chr15 62416343 62416518 -23279236 + (GAATG)n Satellite Satellite 2 176 0 882 148 0 0 chr15 62416538 62416714 -23279040 + (GAATG)n Satellite Satellite 1 176 0 1134 128 0 7 chr15 62416735 62417644 -23278110 + (GAATG)n Satellite Satellite 2 1080 0 1115 81 0 6 chr15 62417656 62417830 -23277924 + (GAATG)n Satellite Satellite 2 174 0 792 169 0 0 chr15 62417841 62418019 -23277735 + (GAATG)n Satellite Satellite 3 180 0 816 161 0 14 chr15 62418046 62418413 -23277341 + (GAATG)n Satellite Satellite 1 361 0 528 183 0 0 chr15 62418424 62418561 -23277193 + (GAATG)n Satellite Satellite 1 137 0 1191 117 0 0 chr15 62418582 62419173 -23276581 + (GAATG)n Satellite Satellite 1 591 0 716 151 0 27 chr15 62419191 62419376 -23276378 + (GAATG)n Satellite Satellite 1 180 0 1169 122 4 2 chr15 62419389 62419734 -23276020 + (GAATG)n Satellite Satellite 1 525 0 929 115 0 27 chr15 62419747 62419930 -23275824 + (GAATG)n Satellite Satellite 1 178 0 459 182 0 0 chr15 62419943 62420064 -23275690 + (GAATG)n Satellite Satellite 2 122 0 943 124 6 6 chr15 62420080 62420258 -23275496 + (GAATG)n Satellite Satellite 3 180 0 825 284 0 16 chr15 62420278 62420936 -23274818 + (GAATG)n Satellite Satellite 1 647 0 1035 136 0 18 chr15 62420985 62421553 -23274201 + (GAATG)n Satellite Satellite 2 733 0 869 148 0 10 chr15 62421583 62422110 -23273644 + (GAATG)n Satellite Satellite 1 521 0 1104 123 0 4 chr15 62422121 62422412 -23273342 + (GAATG)n Satellite Satellite 2 468 0 1047 134 0 0 chr15 62422424 62422777 -23272977 + (GAATG)n Satellite Satellite 1 353 0 720 171 0 0 chr15 62422818 62423037 -23272717 + (GAATG)n Satellite Satellite 1 219 0 909 90 5 53 chr15 62423049 62423237 -23272517 + (GAATG)n Satellite Satellite 1 179 0 1296 67 0 0 chr15 62423262 62423442 -23272312 + (GAATG)n Satellite Satellite 1 180 0 972 128 0 0 chr15 62423487 62423666 -23272088 + (GAATG)n Satellite Satellite 2 180 0 1041 126 0 14 chr15 62423697 62424017 -23271737 + (GAATG)n Satellite Satellite 1 491 0 948 128 0 0 chr15 62424017 62424196 -23271558 + (GAATG)n Satellite Satellite 2 180 0 1152 116 0 21 chr15 62424257 62424582 -23271172 + (GAATG)n Satellite Satellite 1 494 0 972 133 0 0 chr15 62424582 62424762 -23270992 + (GAATG)n Satellite Satellite 1 180 0 731 152 0 27 chr15 62424813 62424997 -23270757 + (GAATG)n Satellite Satellite 1 179 0 1068 111 0 0 chr15 62425027 62425207 -23270547 + (GAATG)n Satellite Satellite 1 180 0 927 134 0 0 chr15 62425242 62425421 -23270333 + (GAATG)n Satellite Satellite 1 179 0 894 149 0 0 chr15 62425578 62426102 -23269652 + (GAATG)n Satellite Satellite 1 524 0 1008 143 0 0 chr15 62426113 62426367 -23269387 + (GAATG)n Satellite Satellite 1 254 0 715 151 0 27 chr15 62426390 62426575 -23269179 + (GAATG)n Satellite Satellite 1 180 0 2014 129 0 0 chr15 62426740 62427018 -23268736 + AluSx SINE Alu 23 300 -12 400 261 63 35 chr15 62427205 62427347 -23268407 + MER58B DNA MER1_type 196 341 0 332 246 48 12 chr15 62427652 62427819 -23267935 - L1ME4a LINE L1 -6 6115 5943 293 254 34 34 chr15 62427815 62427992 -23267762 + L1MC4a LINE L1 5713 5889 -1919 * 2419 175 29 28 chr15 62428002 62428695 -23267059 + L1M3 LINE L1 5080 5770 -413 428 261 8 42 chr15 62428695 62428814 -23266940 + MER58B DNA MER1_type 227 341 0 1144 184 0 43 chr15 62428914 62429148 -23266606 + AluJo SINE Alu 1 224 -88 23 0 0 0 chr15 62429826 62429849 -23265905 + AT_rich Low_complexity Low_complexity 1 23 0 2381 82 0 0 chr15 62429956 62430247 -23265507 - AluSg SINE Alu -19 291 1 23 0 0 0 chr15 62430247 62430270 -23265484 + AT_rich Low_complexity Low_complexity 1 23 0 2226 102 0 3 chr15 62430271 62430564 -23265190 - AluSx SINE Alu -20 292 1 237 262 65 75 chr15 62430603 62430710 -23265044 + MIR SINE MIR 96 201 -61 469 284 103 86 chr15 62430773 62431005 -23264749 - L3 LINE CR1 -3 1574 1339 592 242 7 33 chr15 62432496 62432649 -23263105 + MER5B DNA MER1_type 1 149 -29 672 77 0 0 chr15 62435766 62435857 -23259897 - L1PA2 LINE L1 -1 6154 6064 934 132 0 0 chr15 62437591 62437720 -23258034 + AluSg/x SINE Alu 78 206 -106 191 111 0 0 chr15 62437728 62437755 -23257999 + (A)n Simple_repeat Simple_repeat 1 27 0 617 136 36 0 chr15 62437766 62437876 -23257878 + L1MA8 LINE L1 6173 6286 -5 2255 111 3 3 chr15 62437896 62438203 -23257551 + AluSq SINE Alu 1 307 -6 1868 162 0 32 chr15 62438223 62438537 -23257217 + AluJo SINE Alu 1 304 -8 218 217 0 43 chr15 62438543 62438612 -23257142 + A-rich Low_complexity Low_complexity 2 67 0 2183 109 0 0 chr15 62438616 62438949 -23256805 + AluSx SINE Alu 1 333 0 303 324 9 0 chr15 62439096 62439204 -23256550 + L1M4c LINE L1 1282 1390 -4994 322 302 44 6 chr15 62439231 62439413 -23256341 + HAL1 LINE L1 1425 1613 -894 2427 84 0 10 chr15 62439907 62440217 -23255537 - AluY SINE Alu -4 307 1 2127 137 0 0 chr15 62440217 62440516 -23255238 - AluSx SINE Alu -13 299 1 265 196 0 0 chr15 62440957 62441003 -23254751 + tRNA-Phe-TTC tRNA tRNA 1 46 -30 310 317 0 0 chr15 62441464 62441546 -23254208 + L1MDa LINE L1 1307 1388 -5152 952 194 78 0 chr15 62441557 62441748 -23254006 - MER58A DNA MER1_type -18 206 1 440 312 60 7 chr15 62441853 62442154 -23253600 + L1M4c LINE L1 1433 1749 -4814 329 305 0 0 chr15 62442147 62442252 -23253502 + L1M4c LINE L1 2624 2728 -3654 * 2516 263 145 49 chr15 62442281 62443463 -23252291 + L1M4c LINE L1 2793 3860 -2522 2125 120 3 0 chr15 62443463 62443754 -23252000 - AluY SINE Alu -18 293 2 2516 263 145 49 chr15 62443754 62444860 -23250894 + L1M4c LINE L1 3860 5300 -1082 698 144 36 0 chr15 62444869 62444980 -23250774 + AluJ SINE Alu 21 135 -177 1951 130 0 4 chr15 62444995 62445272 -23250482 + AluSx SINE Alu 1 276 -36 909 212 0 22 chr15 62445291 62445494 -23250260 + AluJ SINE Alu 135 312 0 269 293 28 9 chr15 62445496 62445602 -23250152 + L1M4c LINE L1 5297 5404 -978 430 320 102 25 chr15 62445602 62446033 -23249721 + L1M4 LINE L1 2994 3457 -2689 215 103 26 0 chr15 62446073 62446112 -23249642 + A-rich Low_complexity Low_complexity 1 40 0 267 180 0 5 chr15 62446795 62447059 -23248695 + AluJo SINE Alu 1 302 0 2248 101 3 19 chr15 62447135 62447451 -23248303 - AluSx SINE Alu -1 311 1 270 0 0 0 chr15 62447845 62447875 -23247879 + (TG)n Simple_repeat Simple_repeat 1 30 0 276 210 142 137 chr15 62448176 62448395 -23247359 - Charlie8 DNA MER1_type -2152 265 46 715 142 100 0 chr15 62449114 62449234 -23246520 + FAM SINE Alu 31 162 -23 635 224 6 0 chr15 62450070 62450235 -23245519 - L1MD2 LINE L1 0 6359 6194 338 137 176 59 chr15 62450236 62450338 -23245416 - L1MD2 LINE L1 -218 6141 6028 40739 46 12 1 chr15 62450691 62456563 -23239191 - L1PA4 LINE L1 -220 5935 1 358 216 43 17 chr15 62456696 62456812 -23238942 - L1MB7 LINE L1 0 6178 6060 995 136 0 187 chr15 62457025 62457298 -23238456 - AluJo SINE Alu -25 287 66 22 0 0 0 chr15 62457474 62457496 -23238258 + AT_rich Low_complexity Low_complexity 1 22 0 1305 158 9 14 chr15 62457504 62457726 -23238028 + AluJo SINE Alu 1 221 -91 579 217 39 20 chr15 62457960 62458163 -23237591 - MER113 DNA MER1_type? -287 234 28 766 191 125 0 chr15 62458200 62458368 -23237386 - MER5A DNA MER1_type 0 189 1 440 322 61 26 chr15 62458841 62459071 -23236683 + MIR SINE MIR 9 246 -16 2130 104 24 0 chr15 62459371 62459658 -23236096 + AluSx SINE Alu 1 294 -18 271 293 85 0 chr15 62459810 62459916 -23235838 + MIR SINE MIR 92 206 -56 23 0 0 0 chr15 62460689 62460712 -23235042 + AT_rich Low_complexity Low_complexity 1 23 0 1243 184 52 66 chr15 62460904 62461209 -23234545 + L1M4 LINE L1 484 784 -5758 237 108 0 0 chr15 62461210 62461247 -23234507 + (CA)n Simple_repeat Simple_repeat 2 38 0 1026 298 126 5 chr15 62461250 62461871 -23233883 + L1MC4 LINE L1 6800 7495 -547 435 278 109 2 chr15 62461952 62462116 -23233638 + L1MC4 LINE L1 7425 7661 -202 245 248 54 40 chr15 62462126 62462275 -23233479 + L1MC5 LINE L1 7610 7760 -201 432 0 0 0 chr15 62462315 62462363 -23233391 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 321 270 65 47 chr15 62462488 62462766 -23232988 + L1MD1 LINE L1 3677 3959 -2187 23 0 0 0 chr15 62462973 62462996 -23232758 + AT_rich Low_complexity Low_complexity 1 23 0 2109 104 11 4 chr15 62463115 62463395 -23232359 + AluSx SINE Alu 1 282 -30 2149 122 0 3 chr15 62463858 62464153 -23231601 + AluSx SINE Alu 3 296 -16 31 76 0 0 chr15 62464436 62464502 -23231252 + AT_rich Low_complexity Low_complexity 1 66 0 713 150 68 15 chr15 62515056 62515189 -23180565 - THE1C LTR MaLR -235 140 1 949 191 0 5 chr15 62515189 62515383 -23180371 + MLT1D LTR MaLR 313 505 0 419 236 229 7 chr15 62515466 62515606 -23180148 + MER5A DNA MER1_type 18 188 -1 430 324 51 33 chr15 62515630 62515906 -23179848 + L1ME3A LINE L1 5684 5962 -208 353 254 17 8 chr15 62516505 62516623 -23179131 + L1MD1 LINE L1 4697 4815 -1331 * 4369 184 42 6 chr15 62516612 62517575 -23178179 + L1MD1 LINE L1 5216 6215 -27 1261 144 0 6 chr15 62517586 62517766 -23177988 - AluSg/x SINE Alu -27 283 105 407 278 109 60 chr15 62517922 62518206 -23177548 + L1M4 LINE L1 3813 4110 -2036 899 255 20 7 chr15 62518211 62518509 -23177245 + L1M4 LINE L1 4180 4481 -1665 4606 124 45 56 chr15 62518517 62519093 -23176661 + L1M2 LINE L1 4404 4985 -1306 2416 69 3 7 chr15 62519093 62519398 -23176356 + AluY SINE Alu 2 305 -6 4606 124 45 56 chr15 62519398 62520026 -23175728 + L1M2 LINE L1 4985 5616 -675 1843 100 4 0 chr15 62520030 62520269 -23175485 + AluSx SINE Alu 14 253 -59 322 228 144 21 chr15 62520467 62520635 -23175119 + MLT1L LTR MaLR 216 484 -131 1420 206 127 102 chr15 62521047 62521780 -23173974 - LTR1B LTR ERV1 -74 752 2 1497 111 75 7 chr15 62521905 62522185 -23173569 + L1MA8 LINE L1 5987 6285 -6 21 36 0 0 chr15 62522185 62522213 -23173541 + AT_rich Low_complexity Low_complexity 1 28 0 2188 79 24 7 chr15 62522511 62522803 -23172951 + AluY SINE Alu 1 297 -14 25 31 0 0 chr15 62523251 62523283 -23172471 + AT_rich Low_complexity Low_complexity 1 32 0 192 271 229 21 chr15 62524349 62524445 -23171309 - L3 LINE CR1 -200 1377 1262 210 294 54 33 chr15 62524479 62524571 -23171183 - L3 LINE CR1 -409 1168 1075 206 255 245 0 chr15 62524728 62524834 -23170920 + MIR SINE MIR 79 210 -52 605 258 143 0 chr15 62524953 62525135 -23170619 - L3 LINE CR1 -733 844 637 234 253 63 13 chr15 62525832 62525911 -23169843 - MIR SINE MIR -70 192 110 2203 113 3 0 chr15 62525939 62526240 -23169514 - AluSx SINE Alu -10 302 1 246 242 11 11 chr15 62527073 62527164 -23168590 - L1ME LINE L1 -241 5880 5790 536 130 22 0 chr15 62527203 62527295 -23168459 - L1MB2 LINE L1 -7 6164 6071 1862 221 43 10 chr15 62527343 62527858 -23167896 - L1ME1 LINE L1 -18 6148 5617 28 0 0 0 chr15 62527859 62527887 -23167867 + AT_rich Low_complexity Low_complexity 1 28 0 552 65 0 0 chr15 62528490 62528567 -23167187 + (TA)n Simple_repeat Simple_repeat 2 78 0 963 241 74 39 chr15 62530790 62531221 -23164533 - LTR33 LTR ERVL -75 446 1 361 310 121 32 chr15 62531235 62531516 -23164238 - L2 LINE L2 -565 2749 2444 2479 63 0 3 chr15 62531755 62532056 -23163698 + AluY SINE Alu 1 300 -11 226 185 0 0 chr15 62532056 62532110 -23163644 + Charlie8 DNA MER1_type 90 143 -2274 597 308 66 76 chr15 62532260 62532302 -23163452 + L1ME3 LINE L1 57 98 -6021 432 55 0 0 chr15 62532302 62532357 -23163397 + (CAA)n Simple_repeat Simple_repeat 2 56 0 597 308 66 76 chr15 62532357 62533023 -23162731 + L1ME3 LINE L1 98 758 -5361 380 304 0 29 chr15 62533163 62533301 -23162453 + L1ME3 LINE L1 4019 4152 -1977 276 239 0 11 chr15 62533562 62533650 -23162104 + L1ME3 LINE L1 4476 4562 -1567 329 321 54 30 chr15 62533794 62534398 -23161356 + L1ME3 LINE L1 4792 5433 -720 1838 145 41 14 chr15 62534398 62534688 -23161066 + AluSx SINE Alu 1 298 -14 329 321 54 30 chr15 62534688 62534994 -23160760 + L1ME3 LINE L1 5433 5730 -423 276 250 49 30 chr15 62535047 62535211 -23160543 + L1ME3 LINE L1 5740 5906 -239 2522 71 0 3 chr15 62535593 62535902 -23159852 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr15 62536568 62536595 -23159159 + AT_rich Low_complexity Low_complexity 1 27 0 184 152 43 22 chr15 62537260 62537306 -23158448 + L2 LINE L2 3267 3313 0 388 255 34 34 chr15 62537555 62537704 -23158050 - L1MEc LINE L1 -2564 3651 3503 2280 255 112 73 chr15 62537713 62538623 -23157131 + HAL1 LINE L1 186 1059 -1448 2253 115 0 6 chr15 62538623 62538937 -23156817 + AluSx SINE Alu 1 312 0 2280 255 112 73 chr15 62538937 62540211 -23155543 + HAL1 LINE L1 1059 2503 -4 209 241 224 17 chr15 62540953 62541011 -23154743 - L2 LINE L2 -217 3055 2986 1539 114 39 0 chr15 62541156 62541411 -23154343 + L1MA3 LINE L1 6035 6299 -6 955 148 0 0 chr15 62541459 62541594 -23154160 + AluSq/x SINE Alu 3 137 -175 2058 132 14 0 chr15 62541596 62541885 -23153869 + AluSx SINE Alu 5 297 -15 326 334 66 45 chr15 62541924 62542451 -23153303 + HAL1b LINE L1 69 606 -742 702 248 143 0 chr15 62542471 62542632 -23153122 + MER5A DNA MER1_type 4 187 -2 21 0 0 0 chr15 62543000 62543021 -23152733 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr15 62543867 62543896 -23151858 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 239 63 69 chr15 62543920 62544079 -23151675 - L1MEc LINE L1 -3047 3168 3011 631 290 49 14 chr15 62544081 62544677 -23151077 - L1MEc LINE L1 -3757 2477 1887 230 81 27 0 chr15 62544691 62544728 -23151026 + (TA)n Simple_repeat Simple_repeat 1 38 0 318 252 0 54 chr15 62544730 62544841 -23150913 + L1MC4 LINE L1 6614 6718 -1324 6831 176 38 7 chr15 62544848 62545244 -23150510 - L1PA13 LINE L1 -8 6155 5773 2002 142 0 10 chr15 62545244 62545539 -23150215 - AluSx SINE Alu -20 292 1 6831 176 38 7 chr15 62545539 62547304 -23148450 - L1PA13 LINE L1 -390 5773 3957 2263 110 7 0 chr15 62547306 62547606 -23148148 - AluSq SINE Alu -11 302 1 1292 152 25 7 chr15 62547606 62547882 -23147872 - L1PA13 LINE L1 -2956 3190 2910 28 0 0 0 chr15 62547906 62547934 -23147820 + AT_rich Low_complexity Low_complexity 1 28 0 2160 116 14 0 chr15 62549014 62549308 -23146446 + AluSq SINE Alu 1 298 -15 192 325 144 31 chr15 62549756 62549916 -23145838 - L3 LINE CR1 -214 1363 1186 299 111 74 0 chr15 62550740 62550794 -23144960 - AluSp/q SINE Alu -5 298 241 7172 187 39 18 chr15 62550909 62550958 -23144796 - L1PA13 LINE L1 -3315 3482 3436 2568 71 0 0 chr15 62550958 62551267 -23144487 - AluY SINE Alu -2 309 1 7172 187 39 18 chr15 62551267 62553730 -23142024 - L1PA13 LINE L1 -3361 3436 897 278 336 20 60 chr15 62553788 62553937 -23141817 + L2 LINE L2 2921 3063 -250 2354 92 3 0 chr15 62553954 62554248 -23141506 - AluSp SINE Alu -18 295 1 284 226 60 0 chr15 62554268 62554352 -23141402 + L2 LINE L2 3152 3240 -73 1351 133 10 0 chr15 62555038 62555234 -23140520 + AluSg/x SINE Alu 103 300 -10 361 272 52 31 chr15 62555560 62555751 -23140003 + L1M4 LINE L1 4458 4652 -1494 1953 143 13 13 chr15 62555784 62556092 -23139662 + AluSx SINE Alu 1 308 -4 3041 149 33 6 chr15 62556115 62556664 -23139090 + L1MB1 LINE L1 5605 6168 0 26 0 0 0 chr15 62556744 62556770 -23138984 + AT_rich Low_complexity Low_complexity 1 26 0 1992 137 7 13 chr15 62556842 62557149 -23138605 - AluY SINE Alu -5 306 2 409 161 35 0 chr15 62557887 62557974 -23137780 + MSTD LTR MaLR 307 396 0 1127 133 0 0 chr15 62558130 62558288 -23137466 + AluSc SINE Alu 135 292 -17 1650 269 123 21 chr15 62558798 62560511 -23135243 + L1MEc LINE L1 1611 3465 -2750 471 250 120 5 chr15 62560562 62560770 -23134984 + LTR16A1 LTR ERVL 224 455 -2 2447 68 0 0 chr15 62560821 62561116 -23134638 + AluY SINE Alu 1 295 -16 518 243 90 6 chr15 62561253 62561430 -23134324 + HAL1b LINE L1 350 541 -807 * 3806 150 11 33 chr15 62561429 62561821 -23133933 + L1MB3 LINE L1 5144 5543 -640 2435 130 14 8 chr15 62561821 62562183 -23133571 + THE1B LTR MaLR 1 364 0 11543 86 11 8 chr15 62562183 62563758 -23131996 + THE1B-int LTR MaLR 1 1580 0 2314 124 17 11 chr15 62563758 62564120 -23131634 + THE1B LTR MaLR 1 364 0 3806 150 11 33 chr15 62564120 62564286 -23131468 + L1MB3 LINE L1 5541 5709 -474 2089 120 7 23 chr15 62564286 62564587 -23131167 + AluSx SINE Alu 1 296 -16 3806 150 11 33 chr15 62564587 62565103 -23130651 + L1MB3 LINE L1 5709 6175 -8 912 255 88 17 chr15 62565151 62565850 -23129904 + HAL1b LINE L1 558 1346 -2 936 147 96 6 chr15 62566130 62566307 -23129447 + MER20 DNA MER1_type 24 216 -3 323 290 21 11 chr15 62567383 62567476 -23128278 - L2 LINE L2 -205 3067 2974 540 224 0 0 chr15 62567644 62567751 -23128003 - MER3 DNA MER1_type -96 113 7 204 125 0 0 chr15 62567829 62567861 -23127893 + (TG)n Simple_repeat Simple_repeat 1 32 0 27 62 0 0 chr15 62567914 62567962 -23127792 + AT_rich Low_complexity Low_complexity 1 48 0 409 356 176 15 chr15 62568758 62569019 -23126735 + L2 LINE L2 2970 3272 0 2428 73 0 0 chr15 62569134 62569421 -23126333 + AluSc SINE Alu 1 287 -22 336 279 174 25 chr15 62570031 62570192 -23125562 - MIR3 SINE MIR -6 202 18 259 311 64 45 chr15 62570196 62570460 -23125294 + L2 LINE L2 2590 2858 -456 374 319 49 14 chr15 62570565 62570709 -23125045 + LTR16A LTR ERVL 21 169 -281 949 264 37 11 chr15 62570818 62571087 -23124667 + LTR16A LTR ERVL 175 450 0 218 205 0 0 chr15 62571260 62571299 -23124455 + CT-rich Low_complexity Low_complexity 2 40 0 1849 173 3 10 chr15 62571311 62571618 -23124136 - AluJb SINE Alu -7 305 1 901 193 6 12 chr15 62573110 62573271 -23122483 - FRAM SINE Alu -22 154 1 212 157 48 41 chr15 62573613 62573763 -23121991 + (CA)n Simple_repeat Simple_repeat 1 151 0 408 157 34 34 chr15 62573810 62573988 -23121766 + (CA)n Simple_repeat Simple_repeat 1 178 0 782 254 99 24 chr15 62575188 62575440 -23120314 - L2 LINE L2 0 3313 3043 207 139 0 0 chr15 62575965 62576001 -23119753 + (A)n Simple_repeat Simple_repeat 1 36 0 2415 75 3 3 chr15 62576349 62576655 -23119099 - AluY SINE Alu -5 306 1 2281 104 13 0 chr15 62577146 62577454 -23118300 + AluSq SINE Alu 2 313 0 193 393 18 12 chr15 62577587 62577750 -23118004 + MIR3 SINE MIR 19 182 -26 227 303 64 106 chr15 62578311 62578747 -23117007 - L2 LINE L2 -51 3221 2804 366 284 35 83 chr15 62579044 62579417 -23116337 + L1ME3A LINE L1 3424 3778 -2368 623 224 112 0 chr15 62579421 62579591 -23116163 + L1ME3A LINE L1 5749 5937 -233 1978 119 3 46 chr15 62579936 62580239 -23115515 + AluJb SINE Alu 1 290 -22 366 123 0 0 chr15 62580262 62580319 -23115435 + (TG)n Simple_repeat Simple_repeat 2 58 0 1083 158 14 14 chr15 62580597 62580812 -23114942 - L1M4 LINE L1 -5333 1209 995 514 287 82 63 chr15 62580820 62581137 -23114617 - HAL1 LINE L1 -1095 1412 1090 1432 162 12 72 chr15 62581582 62581840 -23113914 + MER33 DNA MER1_type 1 234 -2351 1336 214 62 0 chr15 62581840 62582002 -23113752 - AluJo SINE Alu -15 297 110 279 0 0 0 chr15 62582002 62582033 -23113721 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1336 214 62 0 chr15 62582033 62582146 -23113608 - AluJo SINE Alu -202 110 5 1432 162 12 72 chr15 62582146 62582232 -23113522 + MER33 DNA MER1_type 234 324 0 380 297 44 28 chr15 62583212 62583394 -23112360 - MIR SINE MIR -15 247 63 241 315 0 9 chr15 62583478 62583586 -23112168 + L1ME3A LINE L1 5032 5138 -1008 498 235 13 39 chr15 62583596 62583749 -23112005 - L2 LINE L2 0 3313 3165 1254 270 80 19 chr15 62583819 62584457 -23111297 + L1ME3A LINE L1 5255 5931 -239 997 168 0 0 chr15 62584460 62584621 -23111133 - FAM SINE Alu -4 45 1 633 303 94 47 chr15 62587831 62588468 -23107286 - L1M4 LINE L1 -2841 3305 2639 1309 159 147 8 chr15 62588494 62588745 -23107009 - AluJo SINE Alu -26 286 1 318 325 60 0 chr15 62588748 62588899 -23106855 - L1M4 LINE L1 -1830 4316 4157 245 273 129 29 chr15 62589027 62589166 -23106588 - L1M4 LINE L1 -2207 3939 3787 39 38 0 0 chr15 62589206 62589259 -23106495 + AT_rich Low_complexity Low_complexity 1 53 0 477 294 136 41 chr15 62589281 62590260 -23105494 - L1M4 LINE L1 -2404 3742 2671 1942 132 3 6 chr15 62590797 62591108 -23104646 - MER46B DNA MER2_type 0 236 52 287 285 77 17 chr15 62591139 62591374 -23104380 - L1M4 LINE L1 -3758 2388 2140 212 59 29 0 chr15 62591477 62591511 -23104243 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 2099 134 0 7 chr15 62591548 62591847 -23103907 - AluSx SINE Alu -15 297 1 29 47 0 0 chr15 62591871 62591914 -23103840 + AT_rich Low_complexity Low_complexity 1 43 0 353 326 52 54 chr15 62592437 62592799 -23102955 - HAL1 LINE L1 -868 1639 1277 1920 130 63 28 chr15 62592799 62593161 -23102593 - THE1C LTR MaLR 0 375 1 353 326 52 54 chr15 62593161 62593206 -23102548 - HAL1 LINE L1 -1230 1277 1233 26 0 0 0 chr15 62594185 62594211 -23101543 + AT_rich Low_complexity Low_complexity 1 26 0 180 97 0 0 chr15 62594765 62594796 -23100958 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 194 222 19 19 chr15 62595498 62595552 -23100202 + L3 LINE CR1 1424 1477 -100 228 339 161 0 chr15 62597170 62597282 -23098472 + L2 LINE L2 3141 3270 -2 5018 137 75 32 chr15 62598293 62599232 -23096522 - L1MA9 LINE L1 -31 6281 5303 2850 190 10 25 chr15 62599227 62599837 -23095917 + L1MA9 LINE L1 4707 5307 -839 * 14874 149 24 7 chr15 62600420 62605068 -23090686 + L1MA3 LINE L1 1855 6580 -985 369 151 0 0 chr15 62605068 62605121 -23090633 + FLAM_A SINE Alu 20 72 -60 6419 93 12 8 chr15 62605121 62606049 -23089705 + L1MA3 LINE L1 6793 7724 0 2176 115 13 3 chr15 62606059 62606363 -23089391 + AluSc SINE Alu 1 307 -2 30 0 0 0 chr15 62606365 62606395 -23089359 + AT_rich Low_complexity Low_complexity 1 30 0 833 304 115 29 chr15 62606596 62607336 -23088418 - L1ME4a LINE L1 -6 6115 5314 2255 113 0 0 chr15 62608430 62608732 -23087022 + AluSg SINE Alu 1 302 -8 24 53 0 0 chr15 62609321 62609359 -23086395 + AT_rich Low_complexity Low_complexity 1 38 0 2024 144 3 13 chr15 62610210 62610523 -23085231 - AluSx SINE Alu -2 310 1 232 340 62 10 chr15 62610541 62610638 -23085116 + MIR SINE MIR 42 143 -65 2980 213 68 88 chr15 62610736 62611752 -23084002 - L1MC5 LINE L1 -50 7911 6929 1920 129 52 7 chr15 62611752 62612039 -23083715 - AluSx SINE Alu -12 300 1 2980 213 68 88 chr15 62612039 62612420 -23083334 - L1MC5 LINE L1 -1032 6929 6542 22 0 0 0 chr15 62612749 62612771 -23082983 + AT_rich Low_complexity Low_complexity 1 22 0 595 138 32 0 chr15 62612940 62613034 -23082720 - U6 snRNA snRNA -10 97 1 203 329 101 0 chr15 62613204 62613283 -23082471 + L2 LINE L2 3184 3270 -2 251 28 28 0 chr15 62613815 62613851 -23081903 + (CA)n Simple_repeat Simple_repeat 2 38 0 2134 112 30 3 chr15 62613915 62614094 -23081660 - AluSq SINE Alu -1 312 120 189 0 0 0 chr15 62614094 62614115 -23081639 + (TG)n Simple_repeat Simple_repeat 2 22 0 2134 112 30 3 chr15 62614115 62614239 -23081515 - AluSq SINE Alu -193 120 1 234 322 72 17 chr15 62614615 62614795 -23080959 - L2 LINE L2 -411 2903 2714 * 346 248 80 64 chr15 62614794 62614919 -23080835 - L2 LINE L2 -9 3263 3137 818 155 6 22 chr15 62615507 62615688 -23080066 + GA-rich Low_complexity Low_complexity 3 180 0 292 181 67 0 chr15 62615704 62615809 -23079945 + GA-rich Low_complexity Low_complexity 1 112 0 225 262 0 38 chr15 62616294 62616477 -23079277 + GA-rich Low_complexity Low_complexity 1 176 0 299 229 0 0 chr15 62616515 62616576 -23079178 + GA-rich Low_complexity Low_complexity 4 64 0 384 317 32 18 chr15 62618680 62618901 -23076853 - L2 LINE L2 -2754 560 337 25 51 0 0 chr15 62620184 62620223 -23075531 + AT_rich Low_complexity Low_complexity 1 39 0 390 217 139 0 chr15 62620312 62620427 -23075327 + MIR3 SINE MIR 65 195 -13 270 269 94 82 chr15 62622240 62622411 -23073343 + MIR3 SINE MIR 33 205 -3 194 336 121 40 chr15 62622509 62622658 -23073096 - MIR3 SINE MIR -18 190 30 1280 215 6 54 chr15 62623452 62623787 -23071967 + L1ME3 LINE L1 5843 6161 -1 631 226 124 40 chr15 62623905 62624131 -23071623 - MIR SINE MIR 0 262 18 1664 151 6 89 chr15 62624258 62624596 -23071158 + AluJb SINE Alu 1 310 -2 366 91 0 0 chr15 62626227 62626282 -23069472 + (CA)n Simple_repeat Simple_repeat 2 56 0 180 179 0 0 chr15 62627184 62627223 -23068531 + T-rich Low_complexity Low_complexity 1 39 0 494 208 47 20 chr15 62627246 62627395 -23068359 - L1ME4a LINE L1 -2 6119 5967 2434 103 9 9 chr15 62627480 62627829 -23067925 - THE1A LTR MaLR -6 349 1 11916 96 5 0 chr15 62627830 62629402 -23066352 - THE1A-int LTR MaLR -1 1579 1 2246 125 14 8 chr15 62629402 62629755 -23065999 - THE1A LTR MaLR 0 355 1 2226 117 0 7 chr15 62630437 62630745 -23065009 - AluSx SINE Alu -6 306 1 305 238 20 50 chr15 62630745 62630836 -23064918 - MIR3 SINE MIR -9 199 110 183 290 10 70 chr15 62630874 62630974 -23064780 - L2 LINE L2 -349 2965 2872 901 308 61 19 chr15 62631103 62631577 -23064177 - L2 LINE L2 -3 3310 2817 1621 294 77 36 chr15 62631641 62632097 -23063657 - L2 LINE L2 -622 2692 2189 198 0 0 0 chr15 62632097 62632119 -23063635 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1621 294 77 36 chr15 62632119 62632456 -23063298 - L2 LINE L2 -1125 2189 1867 367 278 0 11 chr15 62633031 62633121 -23062633 + MER21B LTR ERV1 1 89 -774 354 257 14 0 chr15 62633145 62633219 -23062535 + MER21B LTR ERV1 20 94 -769 3334 198 86 29 chr15 62633220 62633991 -23061763 + MER21B LTR ERV1 48 862 -1 298 306 148 19 chr15 62634206 62634517 -23061237 - L3 LINE CR1 -614 963 613 190 254 164 0 chr15 62634634 62634701 -23061053 + L3 LINE CR1 697 774 -803 769 166 7 41 chr15 62634847 62634992 -23060762 + AluJb SINE Alu 136 275 -37 288 0 0 0 chr15 62635966 62635998 -23059756 + (CA)n Simple_repeat Simple_repeat 1 32 0 608 290 34 12 chr15 62636103 62636409 -23059345 + MLT1I LTR MaLR 52 407 -2 343 263 106 25 chr15 62636850 62637010 -23058744 + HAL1b LINE L1 72 244 -1104 2528 261 97 71 chr15 62637094 62638597 -23057157 + L1MDb LINE L1 34 1553 -4987 24 0 0 0 chr15 62638597 62638621 -23057133 + AT_rich Low_complexity Low_complexity 1 24 0 461 99 58 0 chr15 62638669 62638790 -23056964 + (TA)n Simple_repeat Simple_repeat 2 129 0 4688 223 84 86 chr15 62638811 62640522 -23055232 + L1MDb LINE L1 1557 3271 -3269 1847 172 30 48 chr15 62640522 62640830 -23054924 - MLT1A1 LTR MaLR 0 365 64 2336 96 0 0 chr15 62640830 62641133 -23054621 - AluY SINE Alu -8 303 1 1847 172 30 48 chr15 62641133 62641196 -23054558 - MLT1A1 LTR MaLR -301 64 1 4688 223 84 86 chr15 62641196 62642228 -23053526 + L1MDb LINE L1 3271 4304 -2236 720 211 0 0 chr15 62642228 62642351 -23053403 - LTR53 LTR ERVL -393 126 4 4688 223 84 86 chr15 62642351 62643561 -23052193 + L1MDb LINE L1 4304 5638 -902 22 35 0 0 chr15 62646052 62646081 -23049673 + AT_rich Low_complexity Low_complexity 1 29 0 707 288 64 10 chr15 62646315 62646610 -23049144 + L1M4 LINE L1 3597 3907 -2239 547 214 60 113 chr15 62646824 62647090 -23048664 - MER112 DNA MER1_type 0 260 9 2413 101 3 0 chr15 62647247 62647553 -23048201 - AluSx SINE Alu -5 307 1 208 195 24 0 chr15 62647663 62647704 -23048050 + MIR SINE MIR 8 49 -213 2595 55 0 3 chr15 62647761 62648073 -23047681 + AluY SINE Alu 1 311 0 2233 105 0 0 chr15 62648084 62648379 -23047375 + AluSg SINE Alu 1 295 -15 358 322 116 34 chr15 62648473 62648706 -23047048 + MLT1I LTR MaLR 41 292 -117 21 57 0 0 chr15 62649030 62649065 -23046689 + AT_rich Low_complexity Low_complexity 1 35 0 281 257 99 40 chr15 62649081 62649233 -23046521 + HAL1b LINE L1 334 494 -854 180 0 0 0 chr15 62649990 62650010 -23045744 + (A)n Simple_repeat Simple_repeat 1 20 0 23 68 0 0 chr15 62650324 62650368 -23045386 + AT_rich Low_complexity Low_complexity 1 44 0 1760 180 3 16 chr15 62650660 62650971 -23044783 - AluJo SINE Alu -5 307 1 267 290 40 8 chr15 62651233 62651357 -23044397 + L1ME LINE L1 5750 5877 -244 1174 204 5 9 chr15 62652606 62652826 -23042928 - AluJo SINE Alu -89 223 5 215 111 0 44 chr15 62653242 62653287 -23042467 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 225 196 49 186 chr15 62653988 62654192 -23041562 + L1ME LINE L1 5647 5822 -299 189 107 0 0 chr15 62654916 62654944 -23040810 + (T)n Simple_repeat Simple_repeat 1 28 0 8018 12 0 0 chr15 62654945 62655862 -23039892 - L1PA2 LINE L1 -1 6154 5235 8234 27 0 0 chr15 62655862 62656827 -23038927 + L1PA2 LINE L1 4270 5234 -912 1992 195 116 11 chr15 62657471 62657928 -23037826 - MLT1D LTR MaLR 0 505 1 1948 153 4 0 chr15 62659119 62659423 -23036331 + AluSx SINE Alu 1 305 0 459 211 78 83 chr15 62659871 62660075 -23035679 - MIR SINE MIR -8 254 52 313 253 121 22 chr15 62660768 62660859 -23034895 + MER91A DNA MER1_type 96 195 -1 626 278 29 12 chr15 62660951 62661124 -23034630 + Charlie8 DNA MER1_type 98 273 -2144 338 218 26 0 chr15 62662190 62662268 -23033486 - MIR SINE MIR -89 119 40 23 33 0 0 chr15 62663281 62663311 -23032443 + GC_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr15 62663648 62663691 -23032063 + GC_rich Low_complexity Low_complexity 1 43 0 218 283 178 7 chr15 62664524 62664676 -23031078 - MIR SINE MIR -73 189 12 2635 213 41 15 chr15 62664963 62665530 -23030224 + MER82 DNA MER2_type 1 582 -71 2590 124 17 20 chr15 62665530 62665933 -23029821 - MER57A LTR ERV1 0 403 2 349 200 14 0 chr15 62665934 62666004 -23029750 + MER82 DNA MER2_type 582 652 -1 594 253 32 7 chr15 62666047 62666201 -23029553 - MIR SINE MIR -7 255 98 2183 120 3 3 chr15 62667653 62667952 -23027802 + AluSx SINE Alu 1 299 -13 651 255 67 62 chr15 62668002 62668390 -23027364 - LTR16A1 LTR ERVL -65 392 3 215 360 53 18 chr15 62669128 62669242 -23026512 + MIR SINE MIR 21 138 -70 2357 80 7 13 chr15 62669271 62669571 -23026183 + AluSg SINE Alu 1 298 -12 260 273 68 11 chr15 62670754 62670842 -23024912 - L2 LINE L2 -17 3255 3163 1925 164 0 10 chr15 62671094 62671405 -23024349 + AluJb SINE Alu 1 308 -4 311 266 0 0 chr15 62671551 62671615 -23024139 + MLT1E LTR MaLR 1 64 -529 776 246 134 35 chr15 62671619 62672014 -23023740 + MLT1J2 LTR MaLR 1 511 0 2027 116 36 23 chr15 62672060 62672363 -23023391 + AluJb SINE Alu 1 307 -5 319 310 137 47 chr15 62672463 62672904 -23022850 - L2 LINE L2 -576 2738 2199 5014 276 80 26 chr15 62674176 62675645 -23020109 + L1MA8 LINE L1 1 1317 -4893 2080 129 3 16 chr15 62675645 62675948 -23019806 + AluSx SINE Alu 1 299 -13 5014 276 80 26 chr15 62675948 62676709 -23019045 + L1MA8 LINE L1 1317 2035 -4175 2633 201 78 3 chr15 62676692 62677329 -23018425 + L1MA8 LINE L1 3240 3924 -2286 * 6626 164 74 38 chr15 62678229 62680425 -23015329 + L1MA8 LINE L1 3932 6217 -138 21 36 0 0 chr15 62680493 62680521 -23015233 + AT_rich Low_complexity Low_complexity 1 28 0 213 121 0 0 chr15 62680795 62680828 -23014926 + (CA)n Simple_repeat Simple_repeat 2 34 0 614 256 133 64 chr15 62680959 62681675 -23014079 + L1ME4a LINE L1 5357 6121 0 2242 97 0 17 chr15 62681730 62682030 -23013724 + AluSq SINE Alu 1 295 -18 745 0 48 0 chr15 62682730 62682835 -23012919 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 750 288 125 27 chr15 62683104 62683511 -23012243 + MLT1J LTR MaLR 1 447 -64 3204 161 35 31 chr15 62683646 62684255 -23011499 - LTR36 LTR ERV1 0 611 1 1030 210 48 13 chr15 62684415 62684706 -23011048 - L1M1 LINE L1 -602 5562 5244 2319 124 36 6 chr15 62684707 62685071 -23010683 + THE1C LTR MaLR 1 375 0 649 149 18 9 chr15 62685106 62685220 -23010534 + LTR36 LTR ERV1 145 259 -352 10268 105 37 17 chr15 62685220 62686719 -23009035 + THE1C-int LTR MaLR 52 1580 0 2410 101 26 32 chr15 62686719 62687096 -23008658 + THE1C LTR MaLR 1 375 0 2749 214 112 60 chr15 62687096 62687265 -23008489 - L1M4 LINE L1 -899 5247 5088 2664 116 3 0 chr15 62687265 62687628 -23008126 - THE1B LTR MaLR 0 364 1 2749 214 112 60 chr15 62687628 62687686 -23008068 - L1M4 LINE L1 -1058 5088 5034 1668 197 0 0 chr15 62687686 62687989 -23007765 - AluJo SINE Alu 0 305 3 2749 214 112 60 chr15 62687989 62688756 -23006998 - L1M4 LINE L1 -1112 5034 4190 2128 135 0 13 chr15 62688756 62689068 -23006686 - AluSx SINE Alu -4 308 1 2749 214 112 60 chr15 62689068 62689136 -23006618 - L1M4 LINE L1 -1956 4190 4127 323 256 47 52 chr15 62689799 62689971 -23005783 + MER5B DNA MER1_type 7 177 -1 2419 78 0 3 chr15 62690105 62690414 -23005340 - AluY SINE Alu -3 308 1 2250 115 3 0 chr15 62691397 62691714 -23004040 + AluSx SINE Alu 1 318 0 279 317 33 0 chr15 62692226 62692346 -23003408 + MIR SINE MIR 96 219 -43 1524 96 0 0 chr15 62692362 62692550 -23003204 - AluSg SINE Alu -122 188 1 528 180 0 0 chr15 62692721 62692810 -23002944 - AluJo SINE Alu -157 155 67 2202 84 0 4 chr15 62693462 62693735 -23002019 + AluSq SINE Alu 21 292 -21 736 230 164 18 chr15 62694031 62694320 -23001434 + MLT1H LTR MaLR 229 595 0 823 269 52 8 chr15 62695231 62695480 -23000274 + MIR SINE MIR 3 262 0 14364 123 57 15 chr15 62695788 62697957 -22997797 + Tigger1 DNA MER2_type 30 2302 -116 1131 103 49 35 chr15 62697957 62698160 -22997594 - L1PA10 LINE L1 -16 6152 5947 14364 123 57 15 chr15 62698160 62698283 -22997471 + Tigger1 DNA MER2_type 2302 2418 0 1984 145 3 0 chr15 62699829 62700135 -22995619 - AluSx SINE Alu 0 307 1 241 145 32 16 chr15 62700667 62700729 -22995025 + CT-rich Low_complexity Low_complexity 2 64 0 502 87 0 130 chr15 62700961 62700988 -22994766 + MADE1 DNA Mariner 1 30 -50 2316 55 41 7 chr15 62700988 62701278 -22994476 + AluY SINE Alu 1 300 -11 502 87 0 130 chr15 62701278 62701342 -22994412 + MADE1 DNA Mariner 30 80 0 21 57 0 0 chr15 62701614 62701649 -22994105 + AT_rich Low_complexity Low_complexity 1 35 0 229 275 116 0 chr15 62701839 62701908 -22993846 - L1P LINE L1 -1329 4817 4741 2214 120 10 0 chr15 62701918 62702219 -22993535 + AluSx SINE Alu 1 304 -8 264 174 72 0 chr15 62702901 62702970 -22992784 + MER5B DNA MER1_type 103 176 -2 21 0 0 0 chr15 62703489 62703510 -22992244 + AT_rich Low_complexity Low_complexity 1 21 0 495 0 0 0 chr15 62703854 62703909 -22991845 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 225 94 0 0 chr15 62706253 62706285 -22989469 + (GA)n Simple_repeat Simple_repeat 1 32 0 290 194 14 0 chr15 62706477 62706549 -22989205 + (TA)n Simple_repeat Simple_repeat 2 74 0 415 260 124 54 chr15 62706674 62706916 -22988838 - MIR SINE MIR 0 262 4 1666 175 36 7 chr15 62706972 62707275 -22988479 - AluJb SINE Alu 0 312 1 290 273 53 45 chr15 62708307 62708439 -22987315 - MIR SINE MIR -19 243 111 333 0 0 0 chr15 62709649 62709686 -22986068 + (TTA)n Simple_repeat Simple_repeat 2 38 0 772 261 37 63 chr15 62709766 62710071 -22985683 + Charlie8 DNA MER1_type 31 321 -2096 30 45 0 0 chr15 62710588 62710632 -22985122 + AT_rich Low_complexity Low_complexity 1 44 0 337 376 26 11 chr15 62710698 62710887 -22984867 - MIR3 SINE MIR -12 196 5 504 204 204 23 chr15 62712718 62712890 -22982864 + MIR SINE MIR 60 262 0 192 247 0 78 chr15 62712943 62713020 -22982734 + MIR SINE MIR 174 244 -18 2333 73 3 38 chr15 62713361 62713674 -22982080 - AluSp SINE Alu -11 302 1 1882 133 8 0 chr15 62714258 62714522 -22981232 + AluSx SINE Alu 32 297 -15 1894 147 77 48 chr15 62714865 62715218 -22980536 + MLT1A1 LTR MaLR 1 363 -2 425 259 145 41 chr15 62715246 62715530 -22980224 + MLT1J1 LTR MaLR 60 374 -76 9808 152 9 7 chr15 62715624 62718321 -22977433 + L1PB1 LINE L1 3447 6147 -4 714 251 123 20 chr15 62718545 62718903 -22976851 + MER113 DNA MER1_type? 82 476 -45 2309 86 7 0 chr15 62719619 62719909 -22975845 + AluSq SINE Alu 1 292 -21 199 51 0 51 chr15 62719922 62719961 -22975793 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 2237 189 85 19 chr15 62720043 62720515 -22975239 + MLT1D LTR MaLR 3 505 0 22 0 0 0 chr15 62720735 62720757 -22974997 + AT_rich Low_complexity Low_complexity 1 22 0 776 126 18 0 chr15 62720763 62720874 -22974880 + FLAM_C SINE Alu 5 117 -26 207 0 0 0 chr15 62720876 62720899 -22974855 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1876 256 5 9 chr15 62721000 62721555 -22974199 + L1MC/D LINE L1 2496 3048 -3098 850 284 29 18 chr15 62721557 62721899 -22973855 + L1MC/D LINE L1 3172 3517 -2629 * 3021 168 47 12 chr15 62721894 62722009 -22973745 + L1MC3 LINE L1 7187 7297 -488 5258 114 7 3 chr15 62722009 62722729 -22973025 - L1PA15 LINE L1 0 6165 5443 3021 168 47 12 chr15 62722729 62723192 -22972562 + L1MC3 LINE L1 7297 7785 0 640 199 66 33 chr15 62723207 62723388 -22972366 + L1MC/D LINE L1 3805 3991 -2155 36 0 0 0 chr15 62723647 62723683 -22972071 + AT_rich Low_complexity Low_complexity 1 36 0 1544 195 0 11 chr15 62723912 62724194 -22971560 + AluJb SINE Alu 22 300 -12 2638 217 62 21 chr15 62724194 62724951 -22970803 + L1MC/D LINE L1 4007 4794 -1352 355 258 11 0 chr15 62724923 62725016 -22970738 + HAL1 LINE L1 2057 2150 -357 * 506 219 91 66 chr15 62725706 62725993 -22969761 + HAL1 LINE L1 2145 2438 -69 2112 107 40 0 chr15 62726042 62726340 -22969414 + AluY SINE Alu 1 310 -1 2170 172 16 0 chr15 62726686 62726707 -22969047 + L1MC/D LINE L1 5037 5056 -1186 2317 114 0 3 chr15 62726707 62727014 -22968740 + AluSx SINE Alu 1 306 -6 2170 172 16 0 chr15 62727014 62727534 -22968220 + L1MC/D LINE L1 5056 5592 -650 511 247 126 32 chr15 62727848 62728095 -22967659 + L1MC4a LINE L1 5255 5524 -2284 384 238 97 9 chr15 62728134 62728312 -22967442 + L1MC4a LINE L1 5711 5770 -392 1918 176 0 0 chr15 62728339 62728651 -22967103 + AluJo SINE Alu 1 312 0 219 277 21 0 chr15 62728898 62728945 -22966809 + L2 LINE L2 3209 3256 -16 2210 102 7 3 chr15 62729590 62729895 -22965859 + AluY SINE Alu 1 306 -5 1939 96 17 55 chr15 62730427 62730744 -22965010 + AluSx SINE Alu 1 306 0 22 0 0 0 chr15 62731037 62731059 -22964695 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 62731305 62731326 -22964428 + (T)n Simple_repeat Simple_repeat 1 21 0 260 324 43 60 chr15 62732537 62732722 -22963032 + L3 LINE CR1 1166 1347 -230 183 179 77 0 chr15 62733647 62733686 -22962068 + L2 LINE L2 3209 3250 -22 2339 177 74 35 chr15 62734378 62734864 -22960890 + MLT1D LTR MaLR 1 505 0 649 214 24 54 chr15 62736223 62736391 -22959363 - MER103 DNA DNA 0 166 4 269 271 0 0 chr15 62739217 62739276 -22956478 + (CAT)n Simple_repeat Simple_repeat 3 61 0 24 32 0 0 chr15 62740167 62740198 -22955556 + AT_rich Low_complexity Low_complexity 1 31 0 1714 149 36 4 chr15 62741163 62741439 -22954315 + AluJb SINE Alu 6 290 -22 1301 109 192 0 chr15 62741539 62741641 -22954113 - MER30 DNA MER1_type 0 230 149 2172 110 20 0 chr15 62741641 62741940 -22953814 + AluSc SINE Alu 1 305 -4 1301 109 192 0 chr15 62741940 62742030 -22953724 - MER30 DNA MER1_type -81 149 1 225 268 89 62 chr15 62742376 62742488 -22953266 + L2 LINE L2 3199 3313 0 353 311 44 22 chr15 62742878 62743013 -22952741 + L3 LINE CR1 1384 1521 -56 382 79 32 0 chr15 62743740 62743803 -22951951 + L1MA2 LINE L1 6240 6304 0 220 328 70 41 chr15 62744328 62744599 -22951155 - L2 LINE L2 -1639 1675 1397 497 270 52 60 chr15 62744853 62745101 -22950653 + L2 LINE L2 3027 3272 0 1172 151 45 6 chr15 62745300 62745479 -22950275 - MER5A DNA MER1_type 0 189 4 257 196 0 0 chr15 62745972 62746023 -22949731 - MER117 DNA MER1_type -50 147 97 528 314 118 57 chr15 62748229 62748858 -22946896 + L1ME4a LINE L1 4495 5161 -985 279 324 84 0 chr15 62748959 62749138 -22946616 + L1ME4a LINE L1 5256 5449 -2359 1088 269 79 73 chr15 62749317 62749888 -22945866 + L1ME4a LINE L1 5407 5984 -137 2037 116 27 3 chr15 62749888 62750181 -22945573 + AluSx SINE Alu 1 300 -12 1088 269 79 73 chr15 62750181 62750318 -22945436 + L1ME4a LINE L1 5984 6119 -2 2468 89 0 3 chr15 62750800 62751114 -22944640 + AluSp SINE Alu 1 313 0 185 154 26 0 chr15 62751343 62751382 -22944372 + (CA)n Simple_repeat Simple_repeat 2 41 0 230 225 54 135 chr15 62751667 62751778 -22943976 - L2 LINE L2 -85 3187 3086 211 293 264 0 chr15 62752111 62752217 -22943537 - MER5A DNA MER1_type 0 189 56 1540 194 27 10 chr15 62752297 62752591 -22943163 - AluJo SINE Alu -13 299 1 221 0 0 33 chr15 62752668 62752698 -22943056 + (CA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr15 62752697 62752719 -22943035 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 237 319 84 0 chr15 62752877 62752996 -22942758 + L2 LINE L2 3179 3307 -6 21 0 0 0 chr15 62753512 62753533 -22942221 + AT_rich Low_complexity Low_complexity 1 21 0 813 144 0 15 chr15 62754831 62754963 -22940791 + AluSg/x SINE Alu 178 307 -3 282 237 11 32 chr15 62755275 62755368 -22940386 + L1MC/D LINE L1 5741 5831 -1977 404 19 19 0 chr15 62756401 62756454 -22939300 + (TG)n Simple_repeat Simple_repeat 1 54 0 293 242 62 38 chr15 62756734 62756974 -22938780 - L1M4 LINE L1 -2828 3318 3073 341 301 112 36 chr15 62757010 62757722 -22938032 - L1M4 LINE L1 -3144 3002 2237 364 296 84 7 chr15 62759406 62759548 -22936206 - L2 LINE L2 -2 3311 3159 190 275 67 81 chr15 62759664 62759813 -22935941 - L2 LINE L2 -207 3065 2919 715 181 62 38 chr15 62759822 62759956 -22935798 - MER20 DNA MER1_type 0 219 79 264 59 0 0 chr15 62759956 62759990 -22935764 + (CA)n Simple_repeat Simple_repeat 2 35 0 715 181 62 38 chr15 62759990 62760015 -22935739 - MER20 DNA MER1_type -140 79 56 997 269 193 13 chr15 62760567 62761017 -22934737 + MLT1H LTR MaLR 19 549 0 1205 214 118 72 chr15 62761341 62761800 -22933954 + MLT1H LTR MaLR 70 549 0 292 300 20 30 chr15 62762209 62762309 -22933445 - L2 LINE L2 -2 3270 3172 449 270 121 75 chr15 62763043 62763781 -22931973 + L1MEd LINE L1 1112 1964 -937 1188 66 0 0 chr15 62763803 62763940 -22931814 + AluSx SINE Alu 17 153 -159 2258 96 7 0 chr15 62763989 62764280 -22931474 + AluSp SINE Alu 1 293 -20 1096 150 0 46 chr15 62764282 62764455 -22931299 + AluSx SINE Alu 134 298 -12 413 256 133 22 chr15 62764943 62765233 -22930521 + L1MEd LINE L1 2434 2745 -3795 442 104 0 0 chr15 62765245 62765312 -22930442 - AluJo SINE Alu -12 300 234 1110 172 6 0 chr15 62765316 62765490 -22930264 - AluJo SINE Alu -137 175 1 426 280 89 30 chr15 62765512 62765748 -22930006 + L1MEd LINE L1 2764 3013 -3527 248 265 83 8 chr15 62766079 62766211 -22929543 + L1MEd LINE L1 3273 3414 -3126 247 279 54 39 chr15 62766827 62766956 -22928798 - L2 LINE L2 -557 2757 2627 319 186 17 102 chr15 62767723 62767801 -22927953 + MER103 DNA DNA 21 87 -79 2245 122 3 0 chr15 62767801 62768104 -22927650 + AluSx SINE Alu 1 304 -8 319 186 17 102 chr15 62768104 62768143 -22927611 + MER103 DNA DNA 87 128 -38 582 137 1 35 chr15 62768355 62768484 -22927270 + L1MD3 LINE L1 7877 8035 -7 809 274 65 84 chr15 62769296 62770799 -22924955 + L1MEc LINE L1 935 2409 -3987 10761 191 21 32 chr15 62770824 62773025 -22922729 + L1MA3 LINE L1 12 2189 -5376 5353 116 19 26 chr15 62823025 62823979 -22871775 + L1MA3 LINE L1 2184 3130 -4435 12654 153 35 25 chr15 62823986 62826970 -22868784 + L1MA3 LINE L1 4010 7038 -686 1891 5 0 0 chr15 62826970 62827174 -22868580 + AluY SINE Alu 108 311 0 12654 153 35 25 chr15 62827174 62827863 -22867891 + L1MA3 LINE L1 7038 7719 -5 1259 225 116 23 chr15 62827880 62828534 -22867220 + L1M1 LINE L1 3723 4437 -3128 250 250 0 0 chr15 62828534 62828598 -22867156 - Charlie1 DNA MER1_type 0 2761 2698 2127 209 57 78 chr15 62828807 62828974 -22866780 + L1ME3A LINE L1 5203 5372 -798 1538 204 36 30 chr15 62828974 62829337 -22866417 + MLT1A1 LTR MaLR 1 365 0 2127 209 57 78 chr15 62829337 62830140 -22865614 + L1ME3A LINE L1 5372 6168 -2 454 248 165 0 chr15 62831002 62831135 -22864619 + MIR SINE MIR 106 260 -2 387 314 64 82 chr15 62831502 62831808 -22863946 + HAL1 LINE L1 809 1108 -1399 2152 122 47 0 chr15 62831808 62832104 -22863650 + AluSg SINE Alu 1 310 0 387 314 64 82 chr15 62832104 62832173 -22863581 + HAL1 LINE L1 1108 1177 -1330 335 271 0 37 chr15 62833700 62833807 -22861947 - HAL1b LINE L1 -833 515 413 36 53 0 0 chr15 62833860 62833917 -22861837 + AT_rich Low_complexity Low_complexity 1 57 0 261 163 0 0 chr15 62834065 62834114 -22861640 + GA-rich Low_complexity Low_complexity 2 50 0 817 213 68 20 chr15 62834143 62834466 -22861288 - MSTD LTR MaLR 0 396 1 472 230 209 10 chr15 62834994 62835190 -22860564 + Charlie2 DNA MER1_type 58 292 -2570 355 249 122 89 chr15 62835401 62835886 -22859868 + MLT1J LTR MaLR 11 511 0 359 310 180 31 chr15 62835899 62836422 -22859332 + L2 LINE L2 1868 2468 -846 194 0 0 37 chr15 62836611 62836638 -22859116 + (TC)n Simple_repeat Simple_repeat 1 26 0 463 291 154 77 chr15 62836645 62837361 -22858393 + L2 LINE L2 2471 3246 -26 12111 174 43 55 chr15 62837892 62841309 -22854445 + L1MA4A LINE L1 1 3378 -3470 5829 139 31 12 chr15 62841307 62841679 -22854075 + L1MA4A LINE L1 4872 5236 -1769 * 4437 117 15 1 chr15 62841679 62842354 -22853400 - L1PA13 LINE L1 -15 6148 5465 5829 139 31 12 chr15 62842354 62843118 -22852636 + L1MA4A LINE L1 5236 5984 -1021 276 30 0 0 chr15 62843118 62843151 -22852603 + (CA)n Simple_repeat Simple_repeat 2 34 0 5829 139 31 12 chr15 62843151 62844115 -22851639 + L1MA4A LINE L1 5984 6999 -6 180 0 0 0 chr15 62844530 62844550 -22851204 + (T)n Simple_repeat Simple_repeat 1 20 0 192 176 27 40 chr15 62844717 62844791 -22850963 + GA-rich Low_complexity Low_complexity 3 75 0 363 279 121 23 chr15 62846225 62846440 -22849314 + L2 LINE L2 2077 2312 -1002 237 198 49 25 chr15 62847053 62847134 -22848620 + LTR50 LTR ERVL 530 612 -183 364 245 11 0 chr15 62847155 62847249 -22848505 + LTR33A LTR ERVL 426 520 -3 827 179 3 58 chr15 62847537 62847746 -22848008 - L1MA9 LINE L1 0 6291 6098 228 256 44 98 chr15 62847991 62848092 -22847662 + L1ME3A LINE L1 4901 5006 -1140 1798 224 67 18 chr15 62848092 62848582 -22847172 + LTR40a LTR ERVL 5 518 -1 228 256 44 98 chr15 62848582 62848796 -22846958 + L1ME3A LINE L1 5006 5199 -947 3439 186 10 0 chr15 62848798 62849513 -22846241 + L1 LINE L1 4125 4846 -1300 5839 113 17 2 chr15 62849513 62850740 -22845014 + L1PA16 LINE L1 4919 6157 -9 368 230 83 24 chr15 62850787 62850980 -22844774 + L1ME3A LINE L1 5236 5435 -733 2271 121 0 3 chr15 62850983 62851296 -22844458 + AluSx SINE Alu 1 312 0 962 211 32 141 chr15 62851396 62851683 -22844071 + L1ME3A LINE L1 5681 5891 -279 2378 127 83 0 chr15 62851683 62852078 -22843676 + MSTA LTR MaLR 1 428 0 962 211 32 141 chr15 62852078 62852292 -22843462 + L1ME3A LINE L1 5891 6127 -43 1281 178 83 11 chr15 62853297 62853573 -22842181 - MLT1D LTR MaLR -3 502 207 263 183 67 0 chr15 62853566 62853626 -22842128 - MLT1D LTR MaLR -419 86 23 * 319 181 16 145 chr15 62853891 62854169 -22841585 - L1MD3 LINE L1 0 8039 7825 231 227 0 0 chr15 62854719 62854763 -22840991 - L2 LINE L2 -5 3308 3265 225 209 0 70 chr15 62855752 62855838 -22839916 + GA-rich Low_complexity Low_complexity 1 80 0 2001 45 0 0 chr15 62857325 62857569 -22838185 - L1PA5 LINE L1 0 6154 5911 887 239 127 54 chr15 62859488 62859594 -22836160 + L2 LINE L2 2609 2706 -607 2089 95 0 59 chr15 62859594 62859898 -22835856 + AluSc SINE Alu 9 294 -15 887 239 127 54 chr15 62859898 62860240 -22835514 + L2 LINE L2 2706 3022 -291 2352 68 0 0 chr15 62860240 62860521 -22835233 + AluSc SINE Alu 1 281 -28 240 35 0 0 chr15 62860530 62860559 -22835195 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 887 239 127 54 chr15 62860559 62860759 -22834995 + L2 LINE L2 3029 3313 0 2273 93 3 0 chr15 62860765 62861056 -22834698 + AluSx SINE Alu 1 292 -20 2330 61 3 10 chr15 62861172 62861465 -22834289 + AluY SINE Alu 1 291 -20 351 307 150 38 chr15 62861688 62862407 -22833347 + L1ME3A LINE L1 4380 5182 -964 569 269 41 36 chr15 62862413 62862649 -22833105 + L1ME LINE L1 5125 5364 -798 2143 129 3 10 chr15 62862649 62862960 -22832794 + AluSx SINE Alu 1 309 -3 569 269 41 36 chr15 62862960 62863155 -22832599 + L1ME LINE L1 5364 5557 -605 1047 290 40 34 chr15 62863429 62863926 -22831828 + L1ME3A LINE L1 5353 5852 -318 2118 157 59 46 chr15 62864081 62864621 -22831133 - MLT1F1 LTR MaLR 0 567 1 400 315 51 11 chr15 62864642 62864820 -22830934 + L1ME3A LINE L1 5986 6170 0 397 285 131 7 chr15 62865049 62865186 -22830568 + L1MC/D LINE L1 5490 5643 -478 653 269 96 23 chr15 62865250 62865469 -22830285 + MIR SINE MIR 15 249 -13 274 258 145 6 chr15 62865476 62865635 -22830119 + L1MC/D LINE L1 5707 5887 -1921 734 165 8 16 chr15 62865906 62866033 -22829721 + MER82 DNA MER2_type 1 126 -527 241 250 75 42 chr15 62866047 62866167 -22829587 + L1M LINE L1 5266 5389 -916 1101 159 66 31 chr15 62866170 62866396 -22829358 + AluJb SINE Alu 64 297 -15 185 111 56 0 chr15 62866405 62866441 -22829313 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 2304 106 3 0 chr15 62867045 62867348 -22828406 - AluSx SINE Alu -8 304 1 21 0 0 0 chr15 62867870 62867891 -22827863 + AT_rich Low_complexity Low_complexity 1 21 0 285 269 39 13 chr15 62869281 62869359 -22826395 + L2 LINE L2 3191 3270 -2 356 38 75 0 chr15 62869541 62869594 -22826160 - AluY SINE Alu 0 302 246 262 324 143 25 chr15 62870146 62870390 -22825364 - L2 LINE L2 -557 2757 2485 512 325 74 30 chr15 62870465 62870696 -22825058 - MIR SINE MIR 0 262 22 337 372 115 16 chr15 62870783 62871358 -22824396 - L2 LINE L2 -976 2338 1707 1413 178 4 30 chr15 62871391 62871661 -22824093 - LTR3 LTR ERVK -3 429 167 322 302 145 6 chr15 62872387 62872546 -22823208 + MIR SINE MIR 37 217 -45 2227 119 6 6 chr15 62872568 62872880 -22822874 - AluSx SINE Alu 0 312 1 207 69 0 0 chr15 62873038 62873067 -22822687 + (CA)n Simple_repeat Simple_repeat 2 30 0 2149 128 0 7 chr15 62873206 62873504 -22822250 - AluSx SINE Alu -16 296 1 2080 119 3 3 chr15 62874113 62874408 -22821346 + AluSx SINE Alu 1 295 -17 1074 226 71 100 chr15 62875572 62876001 -22819753 - L1MC5 LINE L1 -30 7931 7491 1292 240 77 60 chr15 62876001 62876484 -22819270 - LTR16C LTR ERVL 0 491 1 1074 226 71 100 chr15 62876484 62876653 -22819101 - L1MC5 LINE L1 -470 7491 7351 2415 80 7 0 chr15 62876653 62876954 -22818800 - AluSc SINE Alu -6 303 1 1074 226 71 100 chr15 62876954 62877013 -22818741 - L1MC5 LINE L1 -610 7351 7292 787 59 53 0 chr15 62878966 62879118 -22816636 + (TCTA)n Simple_repeat Simple_repeat 3 162 0 313 235 196 0 chr15 62879223 62879325 -22816429 - MIR3 SINE MIR -27 181 60 248 188 21 0 chr15 62880283 62880331 -22815423 + MER91B DNA MER1_type 76 124 -66 447 247 0 10 chr15 62880354 62880451 -22815303 + MER91B DNA MER1_type 93 188 -2 2275 90 6 13 chr15 62880780 62881091 -22814663 + AluSc SINE Alu 1 309 0 207 213 16 16 chr15 62881091 62881143 -22814611 + A-rich Low_complexity Low_complexity 11 65 0 582 274 113 44 chr15 62881585 62881754 -22814000 + L1MC4 LINE L1 7345 7501 -541 3049 173 39 20 chr15 62881754 62881873 -22813881 + L1MB5 LINE L1 5570 5685 -489 1807 213 11 29 chr15 62881873 62882248 -22813506 + MLT1A2 LTR MaLR 4 371 -3 3049 173 39 20 chr15 62882248 62882722 -22813032 + L1MB5 LINE L1 5685 6174 0 582 274 113 44 chr15 62882722 62883113 -22812641 + L1MC4 LINE L1 7501 8042 0 1814 144 0 42 chr15 62883159 62883465 -22812289 + AluJo SINE Alu 1 293 -19 353 294 56 65 chr15 62883786 62884198 -22811556 + HAL1b LINE L1 268 675 -673 339 177 114 25 chr15 62885362 62885441 -22810313 - L2 LINE L2 -22 3291 3206 938 179 18 105 chr15 62885445 62885674 -22810080 - MER3 DNA MER1_type 0 209 1 2155 105 10 3 chr15 62886164 62886458 -22809296 + AluSq SINE Alu 1 296 -17 230 252 29 58 chr15 62886887 62886990 -22808764 + L1ME LINE L1 5485 5584 -537 2246 102 3 0 chr15 62887657 62887962 -22807792 - AluSx SINE Alu -6 306 1 1828 192 20 18 chr15 62888032 62888375 -22807379 + MER2 DNA MER2_type 1 344 0 362 281 64 70 chr15 62888417 62888611 -22807143 + MIR SINE MIR 23 219 -43 869 277 28 0 chr15 62888961 62889174 -22806580 - MIR SINE MIR 0 262 44 1168 257 62 30 chr15 62889177 62889581 -22806173 + LTR16C LTR ERVL 4 420 -71 201 74 0 0 chr15 62889604 62889631 -22806123 + (CA)n Simple_repeat Simple_repeat 1 27 0 674 336 8 8 chr15 62890087 62890337 -22805417 - MIR SINE MIR -6 256 7 277 229 131 34 chr15 62890472 62890591 -22805163 - MIR SINE MIR -62 146 43 1808 169 18 21 chr15 62892135 62892472 -22803282 - MER58B DNA MER1_type -5 336 1 374 328 0 23 chr15 62892677 62892808 -22802946 + MIR SINE MIR 31 158 -104 2084 135 0 19 chr15 62893442 62893760 -22801994 - AluSx SINE Alu 0 312 1 49 32 0 0 chr15 62893780 62893843 -22801911 + AT_rich Low_complexity Low_complexity 1 63 0 496 183 32 56 chr15 62894484 62894610 -22801144 + Charlie8 DNA MER1_type 41 163 -2254 319 239 0 65 chr15 62894681 62894773 -22800981 - L2 LINE L2 -1 3271 3186 7475 165 82 63 chr15 62894826 62895109 -22800645 + L1MD1 LINE L1 13 289 -6251 2550 51 0 0 chr15 62895109 62895404 -22800350 + AluY SINE Alu 1 295 -16 7475 165 82 63 chr15 62895404 62895710 -22800044 + L1MD1 LINE L1 289 587 -5953 183 42 0 0 chr15 62895710 62895734 -22800020 + (CCCA)n Simple_repeat Simple_repeat 3 26 0 7475 165 82 63 chr15 62895734 62896772 -22798982 + L1MD1 LINE L1 587 1682 -4858 2280 92 0 0 chr15 62896772 62897079 -22798675 + AluSq SINE Alu 1 307 0 7475 165 82 63 chr15 62897079 62897217 -22798537 + L1MD1 LINE L1 1682 1816 -4724 797 235 65 76 chr15 62897218 62897620 -22798134 - MER57A LTR ERV1 0 403 2 10988 206 47 29 chr15 62897627 62898429 -22797325 + L1MD1 LINE L1 1820 2606 -4136 2226 121 0 7 chr15 62898429 62898735 -22797019 + AluSx SINE Alu 1 304 -8 10988 206 47 29 chr15 62898735 62900826 -22794928 + L1MD1 LINE L1 2606 4810 -1932 2510 73 0 10 chr15 62900826 62901140 -22794614 + AluY SINE Alu 1 311 0 10988 206 47 29 chr15 62901140 62902352 -22793402 + L1MD1 LINE L1 4810 5999 -743 245 186 23 0 chr15 62902400 62902443 -22793311 - L1MC/D LINE L1 -583 5659 5616 255 270 16 0 chr15 62902469 62902532 -22793222 + L2 LINE L2 2919 2982 -331 3621 160 26 7 chr15 62902543 62903149 -22792605 + L1MD1 LINE L1 6017 6634 -2 275 122 40 54 chr15 62903151 62903225 -22792529 - Charlie4 DNA MER1_type -102 1859 1787 1803 290 123 75 chr15 62903260 62903611 -22792143 - L2 LINE L2 -230 3083 2751 1858 119 0 0 chr15 62903611 62903896 -22791858 - AluSx SINE Alu 0 317 33 380 106 0 106 chr15 62903896 62904026 -22791728 - L1PA11 LINE L1 0 6174 6096 273 157 20 39 chr15 62904026 62904077 -22791677 - AluSx SINE Alu -251 50 1 1803 290 123 75 chr15 62904077 62904894 -22790860 - L2 LINE L2 -562 2751 1792 2332 82 23 0 chr15 62904894 62905199 -22790555 + AluSx SINE Alu 1 312 0 1803 290 123 75 chr15 62905199 62905369 -22790385 - L2 LINE L2 -1521 1792 1632 235 242 118 43 chr15 62905782 62905943 -22789811 - MER65B LTR ERV1 -357 174 2 1414 274 66 21 chr15 62905944 62906415 -22789339 - MER65B-int LTR ERV1 0 4871 4380 2236 214 55 82 chr15 62906432 62907029 -22788725 - MER65B-int LTR ERV1 -656 4215 3635 575 179 32 8 chr15 62907018 62907141 -22788613 - HUERS-P1 LTR ERV1 -677 4259 4134 * 2119 212 116 57 chr15 62907139 62907859 -22787895 - HUERS-P1 LTR ERV1 -1237 5094 4418 2363 75 3 0 chr15 62907859 62908153 -22787601 - AluY SINE Alu -16 295 1 2119 212 116 57 chr15 62908153 62908305 -22787449 - HUERS-P1 LTR ERV1 -1913 4418 2646 914 165 17 72 chr15 62908314 62908551 -22787203 - HUERS-P1 LTR ERV1 -2644 3954 3731 321 160 0 0 chr15 62908640 62908690 -22787064 - HUERS-P1 LTR ERV1 -2867 3731 3682 863 221 0 0 chr15 62908690 62908835 -22786919 + FRAM SINE Alu 1 144 -32 588 125 0 0 chr15 62908835 62908931 -22786823 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 246 216 0 20 chr15 62908931 62908982 -22786772 + G-rich Low_complexity Low_complexity 3 52 0 315 252 138 32 chr15 62909309 62909553 -22786201 - HUERS-P1 LTR ERV1 -2432 3831 3409 2225 158 37 31 chr15 62909576 62910122 -22785632 + MLT2A2 LTR ERVL 1 554 0 260 307 88 0 chr15 62910140 62910254 -22785500 - L2 LINE L2 -1653 1661 1538 36553 30 11 1 chr15 62912119 62918146 -22777608 + L1HS LINE L1 2 6155 0 219 223 0 87 chr15 62918148 62918251 -22777503 + A-rich Low_complexity Low_complexity 1 94 0 737 76 38 0 chr15 62918665 62918770 -22776984 - L1MB8 LINE L1 -11 6167 6059 355 263 21 0 chr15 62918803 62918898 -22776856 - MIR SINE MIR -64 144 48 189 0 0 0 chr15 62919551 62919572 -22776182 + (CTCTG)n Simple_repeat Simple_repeat 3 23 0 208 349 0 0 chr15 62919741 62919804 -22775950 - L2 LINE L2 -1 3312 3250 351 0 0 0 chr15 62920469 62920508 -22775246 + (CA)n Simple_repeat Simple_repeat 2 40 0 341 300 53 35 chr15 62920536 62920763 -22774991 + L2 LINE L2 2945 3175 -97 22 70 0 0 chr15 62921493 62921536 -22774218 + GC_rich Low_complexity Low_complexity 1 43 0 218 256 37 24 chr15 62922680 62922762 -22772992 + MIR SINE MIR 56 138 -70 251 20 61 20 chr15 62923934 62923983 -22771771 + (TA)n Simple_repeat Simple_repeat 2 52 0 33 43 0 0 chr15 62924007 62924054 -22771700 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr15 62924105 62924136 -22771618 + AT_rich Low_complexity Low_complexity 1 31 0 2437 69 0 10 chr15 62924280 62924585 -22771169 + AluY SINE Alu 1 302 -9 1224 133 0 0 chr15 62924585 62924758 -22770996 + AluSg/x SINE Alu 134 306 -6 1760 129 101 18 chr15 62925343 62925629 -22770125 - AluSx SINE Alu -2 310 1 2494 49 0 0 chr15 62925878 62926166 -22769588 - AluY SINE Alu 0 311 24 1679 166 14 27 chr15 62926658 62926991 -22768763 - AluJo SINE Alu 0 312 1 367 236 152 59 chr15 62927460 62927935 -22767819 - L1ME4a LINE L1 -4 6117 5599 234 0 0 0 chr15 62928008 62928034 -22767720 + (A)n Simple_repeat Simple_repeat 1 26 0 2081 128 6 10 chr15 62928130 62928443 -22767311 + AluSx SINE Alu 1 312 0 1782 106 21 103 chr15 62929121 62929259 -22766495 + AluSx SINE Alu 1 149 -163 2311 46 7 56 chr15 62929259 62929564 -22766190 + AluY SINE Alu 1 290 -21 1782 106 21 103 chr15 62929564 62929756 -22765998 + AluSx SINE Alu 149 304 -8 878 172 49 0 chr15 62930408 62930571 -22765183 + FRAM SINE Alu 1 171 -5 213 121 0 0 chr15 62930653 62930686 -22765068 + (TA)n Simple_repeat Simple_repeat 1 33 0 910 143 87 20 chr15 62930740 62930936 -22764818 + MER3 DNA MER1_type 1 209 0 182 258 42 83 chr15 62930936 62931051 -22764703 + L2 LINE L2 3204 3313 0 357 288 106 0 chr15 62932278 62932438 -22763316 - MER5A DNA MER1_type 0 189 13 232 267 17 0 chr15 62933091 62933151 -22762603 - L2 LINE L2 -1 3271 3211 588 247 77 21 chr15 62933851 62934045 -22761709 + L1ME3A LINE L1 5941 6145 -25 25 31 0 0 chr15 62935615 62935647 -22760107 + AT_rich Low_complexity Low_complexity 1 32 0 1844 155 43 46 chr15 62936227 62936303 -22759451 + MER7A DNA MER2_type 1 76 -2962 1557 199 10 22 chr15 62936303 62936614 -22759140 - AluJo SINE Alu 0 312 6 1844 155 43 46 chr15 62936614 62936885 -22758869 + MER7A DNA MER2_type 76 345 -1 348 282 153 39 chr15 62936938 62937193 -22758561 + HAL1 LINE L1 4 287 -2220 912 220 105 92 chr15 62937267 62937540 -22758214 + HAL1 LINE L1 1892 2160 -347 2178 116 0 3 chr15 62937540 62937832 -22757922 + AluSx SINE Alu 1 291 -21 912 220 105 92 chr15 62937832 62938166 -22757588 + HAL1 LINE L1 2160 2507 0 3024 226 28 37 chr15 62938885 62939489 -22756265 - L1MEc LINE L1 -3830 2566 1997 2426 99 0 0 chr15 62939489 62939792 -22755962 - AluY SINE Alu -8 303 1 3024 226 28 37 chr15 62939792 62940211 -22755543 - L1MEc LINE L1 -4399 1997 1576 726 221 22 60 chr15 62940264 62940665 -22755089 - MLT1A2 LTR MaLR -25 349 1 312 268 71 0 chr15 62940668 62940780 -22754974 - L1MEc LINE L1 -5006 1378 1259 2182 125 3 7 chr15 62940904 62941209 -22754545 - AluSx SINE Alu -8 304 1 1591 161 25 7 chr15 62941299 62941578 -22754176 + AluSx SINE Alu 1 284 -28 2105 57 19 4 chr15 62941691 62941953 -22753801 - AluY SINE Alu -44 267 2 1593 205 24 0 chr15 62942152 62942445 -22753309 + AluJo SINE Alu 1 300 -12 192 324 76 0 chr15 62942490 62942595 -22753159 - L2 LINE L2 -9 3304 3192 219 235 163 10 chr15 62943675 62943773 -22751981 - L2 LINE L2 -9 3304 3192 234 255 82 51 chr15 62943919 62944017 -22751737 + MLT1L LTR MaLR 477 577 -38 182 290 0 16 chr15 62944047 62944109 -22751645 + L3 LINE CR1 1497 1557 -20 2078 126 3 7 chr15 62944632 62944933 -22750821 - AluY SINE Alu -11 300 1 24 0 0 0 chr15 62944933 62944957 -22750797 + AT_rich Low_complexity Low_complexity 1 24 0 276 120 0 0 chr15 62945148 62945198 -22750556 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 1714 155 3 61 chr15 62945275 62945604 -22750150 - AluJb SINE Alu -2 310 1 2325 105 0 0 chr15 62945924 62946219 -22749535 + AluSg SINE Alu 1 295 -15 274 292 77 23 chr15 62948581 62948711 -22747043 + L2 LINE L2 3136 3272 0 624 289 91 13 chr15 62948807 62949039 -22746715 + MIR SINE MIR 13 262 0 357 368 63 15 chr15 62949449 62949846 -22745908 + L1M4 LINE L1 4860 5275 -871 8021 45 1 0 chr15 62949858 62951610 -22744144 - L1PA2 LINE L1 0 6155 4403 1202 120 23 6 chr15 62951710 62951885 -22743869 + AluSg/x SINE Alu 113 290 -22 23 0 0 0 chr15 62951897 62951920 -22743834 + AT_rich Low_complexity Low_complexity 1 23 0 2401 86 0 0 chr15 62952027 62952319 -22743435 - AluY SINE Alu -17 294 3 308 292 123 21 chr15 62952371 62952607 -22743147 + L2 LINE L2 1992 2251 -1063 304 327 111 6 chr15 62952608 62952770 -22742984 + MIR SINE MIR 84 262 0 321 277 0 0 chr15 62952839 62952933 -22742821 + L2 LINE L2 2302 2395 -919 534 296 163 26 chr15 62954863 62955346 -22740408 - L2 LINE L2 -273 2999 2454 550 174 81 81 chr15 62956038 62956210 -22739544 - MER69 DNA AcHobo 0 2526 2355 570 282 65 53 chr15 62956218 62956480 -22739274 - LTR41 LTR ERVL -7 766 502 544 96 24 0 chr15 62956596 62956679 -22739075 - MLT2A2 LTR ERVL -368 85 1 656 255 27 16 chr15 62956781 62956989 -22738765 - LTR41 LTR ERVL -557 238 1 4434 140 36 30 chr15 62956989 62957350 -22738404 + L1MA9 LINE L1 5418 5775 -537 1880 129 4 0 chr15 62957350 62957622 -22738132 + AluSq SINE Alu 39 311 -2 4434 140 36 30 chr15 62957622 62957649 -22738105 + L1MA9 LINE L1 5775 5800 -512 2048 94 54 20 chr15 62957649 62957947 -22737807 + AluSx SINE Alu 1 308 -4 4434 140 36 30 chr15 62957947 62957977 -22737777 + L1MA9 LINE L1 5800 5828 -484 2398 102 0 0 chr15 62957977 62958281 -22737473 + AluSg SINE Alu 1 304 -6 4434 140 36 30 chr15 62958281 62958556 -22737198 + L1MA9 LINE L1 5828 6121 -191 2414 97 0 0 chr15 62958556 62958855 -22736899 + AluSx SINE Alu 1 299 -13 4434 140 36 30 chr15 62958855 62958985 -22736769 + L1MA9 LINE L1 6121 6249 -63 2340 93 0 13 chr15 62958987 62959298 -22736456 - AluSc SINE Alu -2 307 1 1183 137 10 10 chr15 62959298 62959502 -22736252 - L1P LINE L1 -744 5402 5199 2873 113 5 0 chr15 62960017 62960459 -22735295 + L1P LINE L1 4757 5200 -946 21 0 0 0 chr15 62961203 62961224 -22734530 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr15 62961270 62961317 -22734437 + AT_rich Low_complexity Low_complexity 1 47 0 198 0 0 0 chr15 62961322 62961344 -22734410 + (T)n Simple_repeat Simple_repeat 1 22 0 2637 61 0 0 chr15 62961356 62961667 -22734087 + AluY SINE Alu 1 311 0 1987 178 18 18 chr15 62961889 62962277 -22733477 + MLT1B LTR MaLR 1 388 -2 2152 113 3 22 chr15 62962320 62962639 -22733115 + AluSp SINE Alu 1 313 0 2523 53 23 7 chr15 62962907 62963211 -22732543 + AluY SINE Alu 1 309 -2 206 265 19 147 chr15 62964212 62964423 -22731331 + MER5A DNA MER1_type 1 184 -5 293 222 12 12 chr15 62965022 62965103 -22730651 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 424 303 87 5 chr15 62966047 62966232 -22729522 + MIR SINE MIR 63 262 0 211 253 25 76 chr15 62966701 62966780 -22728974 + L3 LINE CR1 1328 1402 -175 266 68 45 0 chr15 62966801 62966845 -22728909 + (CATA)n Simple_repeat Simple_repeat 2 47 0 640 239 48 5 chr15 62966899 62967087 -22728667 + L1ME2 LINE L1 4512 4707 -1439 659 122 31 0 chr15 62967088 62967186 -22728568 + AluSg/x SINE Alu 196 296 -14 2989 188 49 70 chr15 62967192 62967641 -22728113 + L1ME2 LINE L1 4713 5170 -994 1577 135 5 0 chr15 62967641 62967863 -22727891 + AluSg/x SINE Alu 79 301 -11 2989 188 49 70 chr15 62967863 62968068 -22727686 + L1ME2 LINE L1 5170 5378 -786 2383 88 0 20 chr15 62968068 62968373 -22727381 + AluSc SINE Alu 1 299 -10 2989 188 49 70 chr15 62968373 62968968 -22726786 + L1ME2 LINE L1 5378 5950 -214 1405 180 0 0 chr15 62968972 62969194 -22726560 + AluJo SINE Alu 5 226 -86 791 206 121 25 chr15 62969212 62969411 -22726343 + L1ME2 LINE L1 5934 6151 -13 4370 211 161 37 chr15 62969413 62969700 -22726054 + L1MC4 LINE L1 6347 6597 -1445 216 97 0 0 chr15 62969700 62969731 -22726023 + (TAGG)n Simple_repeat Simple_repeat 2 32 0 4370 211 161 37 chr15 62969731 62970952 -22724802 + L1MC4 LINE L1 6597 8042 0 2109 86 13 7 chr15 62971222 62971526 -22724228 + AluY SINE Alu 6 311 0 833 242 0 16 chr15 62971538 62971732 -22724022 - LTR16A LTR ERVL -50 400 210 950 164 21 21 chr15 62971732 62971921 -22723833 - AluJ SINE Alu -6 306 118 2458 83 0 0 chr15 62971940 62972240 -22723514 - AluY SINE Alu -11 300 1 650 163 22 74 chr15 62972258 62972393 -22723361 - AluJ SINE Alu -179 133 6 818 301 0 0 chr15 62972398 62972591 -22723163 - LTR16A LTR ERVL -232 218 26 395 254 131 56 chr15 62973311 62973602 -22722152 + HAL1b LINE L1 29 353 -995 2308 89 3 3 chr15 62973602 62973904 -22721850 + AluY SINE Alu 1 302 -9 395 254 131 56 chr15 62973904 62973971 -22721783 + HAL1b LINE L1 353 414 -934 * 477 240 0 10 chr15 62973949 62974053 -22721701 - L1MC4a LINE L1 -473 7335 7233 343 270 8 29 chr15 62974067 62974297 -22721457 + HAL1b LINE L1 456 727 -621 387 236 82 0 chr15 62974300 62974410 -22721344 - MIR SINE MIR -10 252 134 1126 149 4 107 chr15 62975392 62975439 -22720315 - MER20 DNA MER1_type 0 219 169 2383 55 3 42 chr15 62975439 62975747 -22720007 - AluY SINE Alu -15 296 1 1126 149 4 107 chr15 62975747 62975941 -22719813 - MER20 DNA MER1_type -50 169 3 2306 100 3 0 chr15 62976540 62976840 -22718914 - AluSg SINE Alu -9 301 1 292 321 36 9 chr15 62977740 62977852 -22717902 + L2 LINE L2 3110 3224 -48 425 333 112 48 chr15 62978180 62978598 -22717156 + L2 LINE L2 2812 3256 -16 198 347 14 0 chr15 62978629 62978701 -22717053 - MIR SINE MIR -141 121 49 2188 87 28 3 chr15 62978720 62979033 -22716721 - AluSg SINE Alu 0 310 1 2275 109 0 0 chr15 62979719 62980021 -22715733 + AluSg SINE Alu 6 307 -3 2279 95 0 3 chr15 62980988 62981283 -22714471 + AluSq SINE Alu 1 294 -19 294 221 0 4 chr15 62981350 62981416 -22714338 + MER5A DNA MER1_type 31 105 -84 17589 32 22 1 chr15 62981755 62987720 -22708034 - L1PA2 LINE L1 0 6155 4 1916 141 3 3 chr15 62987998 62988322 -22707432 + AluSx SINE Alu 1 324 0 1496 170 41 38 chr15 62988364 62988631 -22707123 + L1MB2 LINE L1 5852 6122 -49 2314 104 3 0 chr15 62988631 62988929 -22706825 + AluSg SINE Alu 1 299 -11 1496 170 41 38 chr15 62988929 62988978 -22706776 + L1MB2 LINE L1 6122 6169 -2 1317 253 78 64 chr15 62989187 62989824 -22705930 + L1ME4a LINE L1 5267 5912 -209 2336 74 3 3 chr15 62989953 62990264 -22705490 - AluSx SINE Alu 0 311 1 455 209 0 0 chr15 62993161 62993247 -22702507 + L2 LINE L2 3228 3313 0 444 16 148 0 chr15 62993381 62993477 -22702277 + AluSg/x SINE Alu 212 316 0 260 245 104 28 chr15 62993482 62993588 -22702166 - L2 LINE L2 -23 3249 3136 325 286 122 25 chr15 62993698 62993894 -22701860 + MIR SINE MIR 15 229 -33 218 283 0 0 chr15 62994396 62994449 -22701305 + L2 LINE L2 3251 3303 -10 898 284 45 29 chr15 62994677 62994990 -22700764 + MLT1L LTR MaLR 298 615 0 2236 109 0 13 chr15 62996083 62996385 -22699369 + AluSx SINE Alu 1 298 -14 262 308 0 0 chr15 62996418 62996496 -22699258 + L2 LINE L2 3195 3272 0 186 341 48 24 chr15 62996655 62996863 -22698891 - L2 LINE L2 -1360 1954 1742 183 304 111 17 chr15 62999300 62999481 -22696273 + L2 LINE L2 1708 1905 -1409 2385 92 0 6 chr15 62999608 62999922 -22695832 - AluSx SINE Alu 0 312 1 180 300 50 10 chr15 63000094 63000194 -22695560 + L2 LINE L2 2247 2350 -964 275 290 55 41 chr15 63000417 63000562 -22695192 + MER5A DNA MER1_type 38 184 -5 2365 110 0 0 chr15 63002063 63002364 -22693390 - AluSx SINE Alu -11 301 1 691 204 116 55 chr15 63002788 63002969 -22692785 - MER63A DNA MER1_type 0 210 19 1196 160 0 11 chr15 63003137 63003325 -22692429 - MER5A DNA MER1_type 0 189 4 543 226 151 6 chr15 63003404 63003563 -22692191 + MER5A DNA MER1_type 8 189 0 593 233 58 23 chr15 63003575 63003747 -22692007 - MER5B DNA MER1_type 0 178 1 36 91 0 0 chr15 63003996 63004095 -22691659 + AT_rich Low_complexity Low_complexity 1 99 0 2417 118 80 34 chr15 63004147 63004561 -22691193 + Tigger2a DNA MER2_type 2 434 0 1359 185 34 31 chr15 63004953 63005278 -22690476 + L1MB8 LINE L1 5852 6177 -1 256 0 0 0 chr15 63005552 63005588 -22690166 - AluY SINE Alu -4 299 264 267 103 0 0 chr15 63006459 63006498 -22689256 + (T)n Simple_repeat Simple_repeat 1 39 0 183 156 0 0 chr15 63006731 63006763 -22688991 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 258 56 0 0 chr15 63006854 63006890 -22688864 + (TG)n Simple_repeat Simple_repeat 2 37 0 291 279 70 39 chr15 63007205 63007334 -22688420 + MIR3 SINE MIR 59 191 -17 533 230 30 7 chr15 63008215 63008350 -22687404 - L1ME4a LINE L1 -20 6101 5964 190 284 30 15 chr15 63008485 63008552 -22687202 - L2 LINE L2 -195 3077 3010 189 296 37 46 chr15 63008553 63008661 -22687093 - L2 LINE L2 -194 3078 2972 23 0 0 0 chr15 63008899 63008922 -22686832 + AT_rich Low_complexity Low_complexity 1 23 0 210 147 0 0 chr15 63009518 63009552 -22686202 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 181 274 59 29 chr15 63009724 63009826 -22685928 - L2 LINE L2 -342 2930 2826 2055 126 10 82 chr15 63010215 63010619 -22685135 - THE1C LTR MaLR 0 375 1 839 229 84 28 chr15 63010698 63010947 -22684807 - MLT1K LTR MaLR -6 582 320 2461 34 14 7 chr15 63011084 63011375 -22684379 - AluY SINE Alu -18 293 1 276 342 29 0 chr15 63012834 63012976 -22682778 + MIR3 SINE MIR 48 197 -11 206 264 19 0 chr15 63013358 63013411 -22682343 + L2 LINE L2 2916 2969 -303 426 248 133 0 chr15 63013429 63013542 -22682212 - MER91C DNA MER1_type -1 139 12 210 222 0 32 chr15 63013624 63013687 -22682067 + CT-rich Low_complexity Low_complexity 1 61 0 409 192 50 20 chr15 63013687 63013786 -22681968 - L2 LINE L2 -17 3296 3195 187 204 0 41 chr15 63013789 63013838 -22681916 + L2 LINE L2 3030 3076 -196 2397 83 0 3 chr15 63015087 63015387 -22680367 + AluSq SINE Alu 1 299 -14 1769 201 7 0 chr15 63015487 63015790 -22679964 - AluJb SINE Alu -7 305 1 2416 64 7 3 chr15 63015992 63016287 -22679467 + AluY SINE Alu 2 297 -14 256 186 3 10 chr15 63016522 63016581 -22679173 + MIR SINE MIR 61 117 -91 2526 68 7 7 chr15 63016588 63016898 -22678856 - AluY SINE Alu -1 310 1 710 212 56 67 chr15 63016984 63017089 -22678665 - MER58B DNA MER1_type -2083 337 233 2859 58 13 11 chr15 63017089 63017470 -22678284 + L1PA13 LINE L1 5782 6163 0 710 212 56 67 chr15 63017470 63017543 -22678211 - MER58B DNA MER1_type -2187 233 161 2298 94 3 7 chr15 63017607 63017906 -22677848 - AluSg SINE Alu -12 298 1 454 308 28 16 chr15 63019211 63019393 -22676361 + MIR SINE MIR 39 222 -40 1969 66 18 40 chr15 63019476 63019748 -22676006 - AluY SINE Alu -45 266 1 213 195 0 0 chr15 63020159 63020200 -22675554 + L2 LINE L2 3230 3270 -43 487 211 21 11 chr15 63020203 63020298 -22675456 + MER81 DNA DNA 11 106 -8 214 167 0 0 chr15 63020324 63020360 -22675394 + GA-rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr15 63020629 63020657 -22675097 + AT_rich Low_complexity Low_complexity 1 28 0 277 283 87 0 chr15 63020755 63020893 -22674861 - MIR3 SINE MIR -18 190 41 1307 221 89 26 chr15 63021441 63021789 -22673965 + MLT1A2 LTR MaLR 1 370 -4 320 271 21 0 chr15 63021796 63021892 -22673862 + L2 LINE L2 697 794 -2520 440 222 114 48 chr15 63021907 63022074 -22673680 - MER5B DNA MER1_type 0 178 1 1946 123 3 52 chr15 63022136 63022460 -22673294 + AluJb SINE Alu 1 308 -4 235 252 25 59 chr15 63022460 63022572 -22673182 + L1P5 LINE L1 5321 5430 -721 38 39 0 0 chr15 63022580 63022632 -22673122 + AT_rich Low_complexity Low_complexity 1 52 0 249 167 0 74 chr15 63022679 63022733 -22673021 + L1MC/D LINE L1 5774 5823 -2172 867 149 0 8 chr15 63022837 63022971 -22672783 - FLAM_A SINE Alu 0 133 1 822 109 0 0 chr15 63023596 63023706 -22672048 + AluSc SINE Alu 1 110 -199 226 132 0 0 chr15 63023706 63023744 -22672010 + Alu SINE Alu 258 295 -5 347 271 66 26 chr15 63023766 63023917 -22671837 + MER117 DNA MER1_type 3 159 -38 1389 120 0 0 chr15 63024019 63024211 -22671543 - AluSg/x SINE Alu -1 311 120 223 345 64 18 chr15 63024861 63025032 -22670722 - L2 LINE L2 -197 3075 2897 2251 73 16 35 chr15 63025451 63025764 -22669990 - AluY SINE Alu -4 307 1 311 168 49 0 chr15 63026734 63026802 -22668952 - MIR SINE MIR -62 146 82 245 361 36 6 chr15 63028443 63028609 -22667145 - L2 LINE L2 -261 3011 2841 262 250 30 60 chr15 63028899 63028999 -22666755 + L2 LINE L2 2965 3061 -211 2264 122 92 5 chr15 63029058 63029451 -22666303 - L1MB2 LINE L1 -3 6168 5742 183 129 0 0 chr15 63030107 63030138 -22665616 + (CA)n Simple_repeat Simple_repeat 2 32 0 303 234 199 6 chr15 63031689 63031860 -22663894 + L1MEc LINE L1 1247 1450 -4946 2177 116 10 0 chr15 63031958 63032251 -22663503 - AluSg SINE Alu -14 296 1 1402 212 78 125 chr15 63033828 63034446 -22661308 + MLT1E LTR MaLR 1 589 -4 1354 89 58 0 chr15 63035026 63035217 -22660537 - MER30 DNA MER1_type -28 202 1 186 43 0 0 chr15 63035288 63035311 -22660443 + (CA)n Simple_repeat Simple_repeat 2 24 0 232 260 14 0 chr15 63035479 63035552 -22660202 + L1MEc LINE L1 2817 2890 -3325 377 305 124 13 chr15 63035626 63035859 -22659895 + L1MEc LINE L1 2991 3249 -2966 2261 106 0 0 chr15 63035929 63036222 -22659532 - AluY SINE Alu -18 293 1 337 345 34 0 chr15 63036686 63036834 -22658920 - L2 LINE L2 -2 3311 3159 186 318 45 0 chr15 63037117 63037183 -22658571 + L2 LINE L2 3169 3237 -35 2144 104 0 39 chr15 63037522 63037830 -22657924 + AluSx SINE Alu 1 296 -16 292 220 166 85 chr15 63037911 63038243 -22657511 - MLT1G1 LTR MaLR 0 555 185 362 198 50 25 chr15 63038839 63038923 -22656831 + AluJo SINE Alu 118 196 -106 378 182 0 0 chr15 63039052 63039118 -22656636 + FLAM_A SINE Alu 64 129 -4 21 0 0 0 chr15 63039127 63039148 -22656606 + AT_rich Low_complexity Low_complexity 1 21 0 2200 116 0 10 chr15 63039329 63039640 -22656114 + AluSx SINE Alu 1 308 -4 1100 162 6 0 chr15 63039640 63039813 -22655941 + AluSg/x SINE Alu 124 297 -13 2535 75 3 0 chr15 63039815 63040123 -22655631 + AluY SINE Alu 3 311 0 331 193 36 36 chr15 63040169 63040252 -22655502 - MIR3 SINE MIR -49 159 77 2203 120 0 0 chr15 63042126 63042417 -22653337 + AluSx SINE Alu 1 291 -21 2135 109 10 23 chr15 63042417 63042721 -22653033 + AluSg SINE Alu 1 300 -10 394 299 143 50 chr15 63043062 63043480 -22652274 - MLT1K LTR MaLR 0 588 132 1380 114 17 51 chr15 63044134 63044371 -22651383 + MER30 DNA MER1_type 1 229 -1 191 200 0 0 chr15 63045822 63045862 -22649892 - L2 LINE L2 -5 3308 3269 629 255 156 15 chr15 63045922 63046185 -22649569 + MER102b DNA MER1_type 27 326 -15 222 240 173 0 chr15 63048477 63048552 -22647202 - MIR SINE MIR -63 145 58 276 30 0 0 chr15 63048581 63048614 -22647140 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 123 0 0 chr15 63049005 63049160 -22646594 + GC_rich Low_complexity Low_complexity 1 155 0 36 40 0 0 chr15 63049235 63049285 -22646469 + GC_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr15 63050422 63050459 -22645295 + GC_rich Low_complexity Low_complexity 1 37 0 2251 129 0 0 chr15 63052790 63053101 -22642653 - AluSx SINE Alu -1 311 1 2305 61 7 0 chr15 63054255 63054534 -22641220 - AluY SINE Alu 0 311 31 2154 123 3 0 chr15 63054784 63055077 -22640677 - AluSx SINE Alu -17 295 2 1048 215 44 129 chr15 63055941 63056046 -22639708 + L1M4 LINE L1 2562 2674 -3472 2758 132 34 2 chr15 63056046 63056486 -22639268 - L1PA16 LINE L1 -3 6163 5710 1048 215 44 129 chr15 63056486 63056563 -22639191 + L1M4 LINE L1 2674 2756 -3390 2214 114 0 0 chr15 63056563 63056852 -22638902 - AluSx SINE Alu -21 291 3 1048 215 44 129 chr15 63056852 63056906 -22638848 + L1M4 LINE L1 2756 2813 -3333 2161 135 0 10 chr15 63056906 63057217 -22638537 - AluJb SINE Alu 0 312 5 1048 215 44 129 chr15 63057217 63057499 -22638255 + L1M4 LINE L1 2813 3038 -3108 1006 116 26 13 chr15 63057503 63057658 -22638096 + AluY SINE Alu 1 157 -154 553 207 21 7 chr15 63057923 63058063 -22637691 + L1M4 LINE L1 2897 3038 -3108 2343 75 34 3 chr15 63058067 63058360 -22637394 + AluY SINE Alu 1 302 -9 507 208 56 69 chr15 63058362 63058650 -22637104 + L1M4 LINE L1 3115 3398 -2748 277 232 12 24 chr15 63059482 63059564 -22636190 + MIR3 SINE MIR 91 171 -37 2188 158 9 63 chr15 63059862 63059914 -22635840 - MLT2D LTR ERVL -8 406 353 214 26 51 26 chr15 63059914 63059953 -22635801 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2208 92 3 0 chr15 63059960 63060242 -22635512 - AluSq SINE Alu -30 283 1 2188 158 9 63 chr15 63060242 63060610 -22635144 - MLT2D LTR ERVL -67 347 1 3604 123 47 5 chr15 63060610 63061163 -22634591 - ERVL-D LTR ERVL -7 5757 5182 225 265 0 0 chr15 63061190 63061239 -22634515 + Tigger5 DNA MER2_type 2268 2316 -7 400 189 54 0 chr15 63061243 63061317 -22634437 - Tigger5 DNA MER2_type -2245 78 1 8783 150 29 3 chr15 63061317 63062718 -22633036 - ERVL LTR ERVL -581 5183 3747 195 162 0 0 chr15 63062861 63062898 -22632856 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 355 381 75 18 chr15 63063011 63063292 -22632462 - L2 LINE L2 -172 3100 2804 2269 83 0 0 chr15 63063491 63063779 -22631975 + AluSg SINE Alu 3 290 -20 314 307 13 33 chr15 63064014 63064167 -22631587 - L2 LINE L2 -914 2400 2251 369 352 25 0 chr15 63064306 63064465 -22631289 + MIR SINE MIR 34 196 -66 473 325 6 6 chr15 63064757 63064914 -22630840 + MIR SINE MIR 13 169 -93 3189 37 0 3 chr15 63064938 63065317 -22630437 + L1PA5 LINE L1 5769 6146 -8 2612 80 25 22 chr15 63065386 63065749 -22630005 - THE1B LTR MaLR 0 364 1 996 211 34 8 chr15 63065935 63066172 -22629582 + MIR SINE MIR 20 262 0 2321 84 0 0 chr15 63067132 63067524 -22628230 + AluSq SINE Alu 1 392 0 22 80 0 0 chr15 63067724 63067774 -22627980 + AT_rich Low_complexity Low_complexity 1 50 0 2400 90 3 0 chr15 63067774 63068074 -22627680 + AluSc SINE Alu 1 301 -8 344 68 0 68 chr15 63068074 63068133 -22627621 + L1PB1 LINE L1 6096 6150 -1 1409 132 95 33 chr15 63068333 63068637 -22627117 - MER33 DNA MER1_type 0 324 2 2200 106 33 3 chr15 63068853 63069155 -22626599 - AluSx SINE Alu -1 311 1 308 316 48 38 chr15 63069198 63069407 -22626347 - L1M4c LINE L1 -3898 2486 2276 1303 158 101 116 chr15 63069499 63069956 -22625798 - LTR7 LTR ERV1 0 450 1 218 161 0 36 chr15 63070238 63070294 -22625460 + (TATG)n Simple_repeat Simple_repeat 3 56 0 329 275 128 48 chr15 63070350 63070601 -22625153 + L1ME4a LINE L1 5626 5896 -225 309 225 13 86 chr15 63070628 63070705 -22625049 + L1ME4a LINE L1 5978 6040 -81 2384 90 0 3 chr15 63070705 63071004 -22624750 - AluSx SINE Alu -14 298 1 309 225 13 86 chr15 63071004 63071077 -22624677 + L1ME4a LINE L1 6040 6117 -4 8031 10 2 1 chr15 63071084 63072030 -22623724 + L1PA3 LINE L1 5209 6155 0 498 108 0 0 chr15 63072114 63072188 -22623566 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 290 284 11 0 chr15 63072193 63072281 -22623473 - MIR SINE MIR -167 95 7 303 288 62 25 chr15 63073522 63073682 -22622072 + L2 LINE L2 3107 3272 0 21 0 0 0 chr15 63073742 63073763 -22621991 + AT_rich Low_complexity Low_complexity 1 21 0 293 268 125 18 chr15 63073846 63073958 -22621796 - L2 LINE L2 -2 3311 3188 2439 81 3 3 chr15 63074553 63074863 -22620891 + AluSp SINE Alu 2 311 -2 248 135 0 0 chr15 63075028 63075065 -22620689 - MLT2A2 LTR ERVL -2 451 415 * 1932 129 92 38 chr15 63075032 63075403 -22620351 - MLT2C1 LTR ERVL -6 391 1 891 207 5 54 chr15 63077753 63077975 -22617779 - L1ME3 LINE L1 0 6162 5952 1593 199 65 39 chr15 63081048 63081479 -22614275 + L1ME3A LINE L1 5696 6137 -33 2945 176 75 6 chr15 63081603 63082125 -22613629 - MLT1F1 LTR MaLR -7 560 3 674 228 34 123 chr15 63082128 63082510 -22613244 - MLT1F1-int LTR MaLR -1 1370 1023 2402 74 0 46 chr15 63083381 63083705 -22612049 + AluY SINE Alu 1 309 -2 775 184 92 6 chr15 63084133 63084307 -22611447 - MER5A DNA MER1_type 0 189 1 2356 119 67 0 chr15 63084351 63084737 -22611017 + L1MB7 LINE L1 5754 6165 -19 1400 109 0 5 chr15 63085069 63085261 -22610493 - L1PB3 LINE L1 -7 6147 5957 1688 164 39 11 chr15 63085306 63085586 -22610168 + AluJo SINE Alu 1 288 -24 731 288 69 48 chr15 63085656 63086020 -22609734 + L1ME4a LINE L1 5537 5919 -202 2290 68 11 4 chr15 63086020 63086329 -22609425 + AluY SINE Alu 1 311 0 731 288 69 48 chr15 63086329 63086483 -22609271 + L1ME4a LINE L1 5919 6068 -53 623 201 196 20 chr15 63086927 63087126 -22608628 - MIR SINE MIR 0 262 29 2395 89 0 22 chr15 63087143 63087457 -22608297 - AluSp SINE Alu -6 307 1 763 205 31 6 chr15 63087919 63088080 -22607674 + MER97b DNA MER1_type? 14 178 -875 201 299 104 60 chr15 63088413 63088664 -22607090 + L2 LINE L2 3003 3264 -8 2339 101 0 7 chr15 63088680 63088987 -22606767 + AluSc SINE Alu 1 305 -4 267 87 0 0 chr15 63090208 63090254 -22605500 - L1MA4 LINE L1 -5 6295 6250 344 261 0 92 chr15 63090282 63090401 -22605353 + MER102a DNA MER1_type 222 329 -1 847 218 6 6 chr15 63090416 63090590 -22605164 - MER5B DNA MER1_type -3 175 2 221 286 114 9 chr15 63090893 63090998 -22604756 - MIR SINE MIR -32 230 115 2211 109 0 7 chr15 63091361 63091654 -22604100 + AluSx SINE Alu 1 291 -21 2135 109 10 23 chr15 63091654 63091958 -22603796 + AluSg SINE Alu 1 300 -10 394 299 143 50 chr15 63092299 63092717 -22603037 - MLT1K LTR MaLR 0 588 132 1380 114 17 51 chr15 63093371 63093608 -22602146 + MER30 DNA MER1_type 1 229 -1 191 200 0 0 chr15 63095059 63095099 -22600655 - L2 LINE L2 -5 3308 3269 629 255 156 15 chr15 63095159 63095422 -22600332 + MER102b DNA MER1_type 27 326 -15 222 240 173 0 chr15 63097712 63097787 -22597967 - MIR SINE MIR -63 145 58 276 30 0 0 chr15 63097816 63097849 -22597905 + (TG)n Simple_repeat Simple_repeat 1 33 0 328 297 0 49 chr15 63098366 63098551 -22597203 + CT-rich Low_complexity Low_complexity 3 178 0 314 222 5 49 chr15 63098570 63098755 -22596999 + CT-rich Low_complexity Low_complexity 1 177 0 43287 39 34 2 chr15 63101232 63107165 -22588589 - L1PA2 LINE L1 -29 6126 4 1916 141 3 3 chr15 63107443 63107767 -22587987 + AluSx SINE Alu 1 324 0 1496 170 41 38 chr15 63107809 63108076 -22587678 + L1MB2 LINE L1 5852 6122 -49 2314 104 3 0 chr15 63108076 63108374 -22587380 + AluSg SINE Alu 1 299 -11 1496 170 41 38 chr15 63108374 63108423 -22587331 + L1MB2 LINE L1 6122 6169 -2 1317 253 78 64 chr15 63108632 63109269 -22586485 + L1ME4a LINE L1 5267 5912 -209 2213 83 0 10 chr15 63109398 63109712 -22586042 - AluSx SINE Alu 0 311 1 180 300 50 10 chr15 63109884 63109984 -22585770 + L2 LINE L2 2247 2350 -964 275 290 55 41 chr15 63110207 63110352 -22585402 + MER5A DNA MER1_type 38 184 -5 2365 110 0 0 chr15 63111853 63112154 -22583600 - AluSx SINE Alu -11 301 1 691 204 116 55 chr15 63112578 63112759 -22582995 - MER63A DNA MER1_type 0 210 19 1265 160 0 11 chr15 63112927 63113115 -22582639 - MER5A DNA MER1_type 0 189 4 599 226 151 6 chr15 63113194 63113353 -22582401 + MER5A DNA MER1_type 8 189 0 634 233 58 23 chr15 63113365 63113537 -22582217 - MER5B DNA MER1_type 0 178 1 36 91 0 0 chr15 63113786 63113885 -22581869 + AT_rich Low_complexity Low_complexity 1 99 0 2548 118 80 34 chr15 63113937 63114351 -22581403 + Tigger2a DNA MER2_type 2 434 0 1444 185 34 31 chr15 63114743 63115068 -22580686 + L1MB8 LINE L1 5852 6177 -1 1947 94 64 0 chr15 63165356 63165622 -22530132 - AluSg SINE Alu -27 283 1 239 316 32 42 chr15 63168042 63168137 -22527617 + MER5B DNA MER1_type 64 157 -21 399 326 28 6 chr15 63168385 63168566 -22527188 + MER117 DNA MER1_type 11 195 -2 395 301 68 30 chr15 63169823 63169956 -22525798 - L2 LINE L2 -20 3252 3115 1531 237 160 23 chr15 63173138 63173737 -22522017 + LTR50 LTR ERVL 26 706 -89 436 156 130 0 chr15 63173745 63173822 -22521932 + 5S rRNA rRNA 2 88 -33 716 240 143 10 chr15 63177793 63177989 -22517765 - MIR SINE MIR -38 224 3 1471 102 0 0 chr15 63178167 63178353 -22517401 - AluSg1 SINE Alu -123 186 1 214 164 36 0 chr15 63178654 63178709 -22517045 + (TG)n Simple_repeat Simple_repeat 2 58 0 302 181 71 0 chr15 63179186 63179194 -22516560 + (TA)n Simple_repeat Simple_repeat 2 8 -129 1637 146 60 86 chr15 63179194 63179238 -22516516 - THE1C LTR MaLR 0 375 331 2028 117 7 7 chr15 63179238 63179529 -22516225 + AluSx SINE Alu 6 296 -16 1637 146 60 86 chr15 63179529 63179714 -22516040 - THE1C LTR MaLR -44 331 157 2277 103 0 7 chr15 63179714 63180016 -22515738 + AluSq SINE Alu 1 300 -13 1637 146 60 86 chr15 63180016 63180170 -22515584 - THE1C LTR MaLR -218 157 1 302 181 71 0 chr15 63180170 63180288 -22515466 + (TA)n Simple_repeat Simple_repeat 8 137 0 326 288 0 42 chr15 63180456 63180574 -22515180 - MIR SINE MIR -51 211 99 398 341 102 6 chr15 63180655 63180831 -22514923 - MIR3 SINE MIR -6 202 10 462 145 0 0 chr15 63181560 63181629 -22514125 + Tigger2 DNA MER2_type 1 69 -2649 * 2142 193 56 5 chr15 63181613 63182043 -22513711 + Tigger2 DNA MER2_type 2267 2718 0 325 274 71 35 chr15 63182938 63183051 -22512703 + MIR3 SINE MIR 71 187 -21 201 176 0 0 chr15 63184111 63184145 -22511609 + A-rich Low_complexity Low_complexity 1 34 0 207 200 67 0 chr15 63184243 63184288 -22511466 - L2 LINE L2 -1 3271 3224 184 235 0 39 chr15 63184888 63184939 -22510815 + L3 LINE CR1 1524 1572 -5 1034 181 74 120 chr15 63185752 63186144 -22509610 - MLT1C LTR MaLR -93 374 1 445 227 17 50 chr15 63186146 63186265 -22509489 + MIR SINE MIR 145 259 -3 823 266 80 0 chr15 63186561 63186798 -22508956 + MIR SINE MIR 7 262 0 5093 148 25 22 chr15 63187225 63187786 -22507968 - L1MB1 LINE L1 -13 6176 5618 279 0 0 0 chr15 63187786 63187817 -22507937 + (TA)n Simple_repeat Simple_repeat 1 31 0 884 169 0 22 chr15 63187819 63187955 -22507799 - FLAM_A SINE Alu 0 133 1 5093 148 25 22 chr15 63187955 63188079 -22507675 - L1MB1 LINE L1 -571 5618 5496 2143 123 0 10 chr15 63188079 63188381 -22507373 - AluSx SINE Alu -13 299 1 5093 148 25 22 chr15 63188381 63188582 -22507172 - L1MB1 LINE L1 -693 5496 5284 23 0 0 0 chr15 63189375 63189398 -22506356 + AT_rich Low_complexity Low_complexity 1 23 0 1949 136 55 27 chr15 63190055 63190385 -22505369 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr15 63191814 63191835 -22503919 + AT_rich Low_complexity Low_complexity 1 21 0 2140 109 0 3 chr15 63191859 63192153 -22503601 - AluSx SINE Alu -19 293 1 1284 180 150 26 chr15 63193328 63193634 -22502120 + MER2 DNA MER2_type 1 344 0 304 127 48 0 chr15 63194625 63194688 -22501066 + CT-rich Low_complexity Low_complexity 4 69 0 562 110 0 0 chr15 63196395 63196468 -22499286 + AluJ/FRAM SINE Alu 224 296 -16 490 264 73 55 chr15 63196487 63196816 -22498938 + L1ME4a LINE L1 5606 5940 -181 258 32 0 0 chr15 63196830 63196861 -22498893 + (TAA)n Simple_repeat Simple_repeat 3 33 0 721 271 65 0 chr15 63196871 63197070 -22498684 - MIR SINE MIR 0 262 51 633 293 75 5 chr15 63197078 63197266 -22498488 + LTR16B LTR ERVL 1 201 -263 733 164 9 0 chr15 63197266 63197382 -22498372 + FLAM_A SINE Alu 16 132 -10 1365 122 15 5 chr15 63197390 63197595 -22498159 + AluSq SINE Alu 21 227 -86 1938 123 0 4 chr15 63197712 63197973 -22497781 - AluSx SINE Alu -52 260 1 2252 159 84 0 chr15 63197973 63198043 -22497711 - L1MCa LINE L1 -4105 2321 2258 2392 78 0 0 chr15 63198043 63198337 -22497417 - AluY SINE Alu -1 310 17 2252 159 84 0 chr15 63198337 63198719 -22497035 - L1MCa LINE L1 -4168 2258 1831 1300 131 0 16 chr15 63198719 63198910 -22496844 - AluSg/x SINE Alu -18 292 105 2253 101 0 13 chr15 63199336 63199653 -22496101 - AluSq SINE Alu 0 313 1 1217 96 0 0 chr15 63200828 63200984 -22494770 + AluSg/x SINE Alu 139 294 -16 1319 159 9 0 chr15 63200985 63201212 -22494542 - L1 LINE L1 -1924 4222 3994 2284 183 20 62 chr15 63201213 63201575 -22494179 - L1 LINE L1 -2997 3149 2816 1784 170 0 7 chr15 63201575 63201863 -22493891 + AluJo SINE Alu 1 286 -26 2284 183 20 62 chr15 63201863 63202052 -22493702 - L1 LINE L1 -3330 2816 2621 2792 166 30 0 chr15 63202065 63202558 -22493196 + L1 LINE L1 4397 4904 -1242 2282 107 3 0 chr15 63202666 63202964 -22492790 + AluSx SINE Alu 1 299 -13 743 130 26 88 chr15 63202964 63203028 -22492726 + L1MCa LINE L1 2359 2425 -4168 1648 165 17 17 chr15 63203028 63203319 -22492435 + AluJb SINE Alu 1 291 -21 743 130 26 88 chr15 63203319 63203514 -22492240 + L1MCa LINE L1 2425 2644 -3949 207 0 0 0 chr15 63203545 63203568 -22492186 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2495 40 3 10 chr15 63203575 63203871 -22491883 + AluY SINE Alu 1 294 -17 272 239 0 0 chr15 63203900 63203971 -22491783 + L1MCa LINE L1 2596 2666 -3760 1693 157 4 25 chr15 63203971 63204251 -22491503 + AluJb SINE Alu 1 274 -38 428 301 6 26 chr15 63204539 63204695 -22491059 - L1MCa LINE L1 -5617 799 647 1228 152 5 38 chr15 63204842 63205053 -22490701 - AluJo SINE Alu -108 204 1 23 33 0 0 chr15 63205173 63205203 -22490551 + AT_rich Low_complexity Low_complexity 1 30 0 1848 142 51 0 chr15 63205203 63205501 -22490253 + AluSx SINE Alu 3 314 0 331 281 156 30 chr15 63206943 63207078 -22488676 + L2 LINE L2 3121 3272 0 3965 249 21 24 chr15 63207315 63208547 -22487207 + L1MCa LINE L1 2683 3911 -2515 2157 108 7 0 chr15 63208549 63208844 -22486910 - AluSq SINE Alu -16 297 1 1914 199 64 7 chr15 63208981 63209418 -22486336 + MLT1C LTR MaLR 6 467 0 274 371 73 0 chr15 63210552 63210676 -22485078 - MIR3 SINE MIR -47 161 29 1286 84 0 6 chr15 63211322 63211489 -22484265 - AluSx SINE Alu -93 219 54 24749 19 1 0 chr15 63212159 63215799 -22479955 - L1HS LINE L1 0 6155 2512 734 245 29 111 chr15 63216027 63216333 -22479421 + Charlie2 DNA MER1_type 38 318 -2464 2262 202 22 67 chr15 63216345 63216779 -22478975 + Charlie2 DNA MER1_type 1860 2255 -607 2525 49 0 0 chr15 63216779 63217065 -22478689 + AluY SINE Alu 1 286 -25 2262 202 22 67 chr15 63217065 63217307 -22478447 + Charlie2 DNA MER1_type 2255 2506 -356 1646 171 11 31 chr15 63217307 63217593 -22478161 + AluJb SINE Alu 1 280 -32 392 171 27 0 chr15 63217626 63217707 -22478047 - L1MB8 LINE L1 -41 6137 6059 23 54 0 0 chr15 63217749 63217786 -22477968 + AT_rich Low_complexity Low_complexity 1 37 0 2120 139 7 0 chr15 63218124 63218426 -22477328 - AluJo SINE Alu -8 304 1 200 294 104 19 chr15 63218563 63218774 -22476980 + L2 LINE L2 2038 2266 -1048 285 288 41 0 chr15 63219040 63219113 -22476641 - MER5A DNA MER1_type -87 102 27 2383 102 0 0 chr15 63219660 63219964 -22475790 + AluSx SINE Alu 1 304 -8 5115 205 24 25 chr15 63222203 63222424 -22473330 + L1MB8 LINE L1 2204 2424 -3722 2590 53 0 0 chr15 63222424 63222725 -22473029 + AluY SINE Alu 2 302 -9 5115 205 24 25 chr15 63222725 63223862 -22471892 + L1MB8 LINE L1 2424 3561 -2585 1516 112 0 23 chr15 63224127 63224342 -22471412 + AluSg/x SINE Alu 80 289 -21 1396 169 11 22 chr15 63224365 63224637 -22471117 + L1MB8 LINE L1 3505 3773 -2373 238 116 0 47 chr15 63224638 63224681 -22471073 + Alu SINE Alu 127 167 -136 4371 167 5 40 chr15 63224746 63225772 -22469982 + L1MB8 LINE L1 5077 6063 -115 1836 152 3 7 chr15 63225775 63226065 -22469689 + AluJb SINE Alu 1 289 -23 560 159 0 124 chr15 63226085 63226150 -22469604 + L1MB8 LINE L1 6052 6091 -87 2525 64 0 6 chr15 63226150 63226462 -22469292 + AluY SINE Alu 2 311 0 560 159 0 124 chr15 63226462 63226541 -22469213 + L1MB8 LINE L1 6091 6178 0 2303 61 0 34 chr15 63226562 63226855 -22468899 + AluY SINE Alu 1 283 -28 348 64 0 0 chr15 63226855 63226902 -22468852 + (CA)n Simple_repeat Simple_repeat 2 48 0 276 100 0 0 chr15 63227153 63227193 -22468561 + (T)n Simple_repeat Simple_repeat 1 40 0 379 152 30 0 chr15 63227622 63227688 -22468066 - U3 snRNA snRNA -145 72 5 2367 88 0 3 chr15 63228386 63228681 -22467073 - AluSq SINE Alu -18 295 2 186 279 133 103 chr15 63228874 63229039 -22466715 - L2 LINE L2 -86 3186 3017 22 0 0 0 chr15 63229741 63229763 -22465991 + AT_rich Low_complexity Low_complexity 1 22 0 350 88 309 0 chr15 63231533 63231601 -22464153 - AluY SINE Alu -1 300 212 393 251 204 6 chr15 63231840 63232007 -22463747 - MIR SINE MIR -11 251 52 231 192 206 0 chr15 63233437 63233510 -22462244 - MIR SINE MIR 0 262 175 860 163 0 0 chr15 63233539 63233711 -22462043 + FLAM_A SINE Alu 1 172 0 250 291 0 0 chr15 63233759 63233814 -22461940 - MIR SINE MIR -195 67 13 204 40 0 0 chr15 63234593 63234618 -22461136 + (TG)n Simple_repeat Simple_repeat 1 25 0 2255 117 0 0 chr15 63235260 63235558 -22460196 + AluSx SINE Alu 1 298 -14 215 255 236 9 chr15 63236162 63236268 -22459486 + MIR3 SINE MIR 47 176 -32 345 218 127 18 chr15 63236597 63236707 -22459047 + L2 LINE L2 3188 3309 -4 1518 65 5 5 chr15 63237242 63237451 -22458303 + AluSq SINE Alu 100 308 0 1693 63 0 18 chr15 63237722 63237944 -22457810 + AluY SINE Alu 1 218 -93 2132 104 4 0 chr15 63238438 63238716 -22457038 + AluSx SINE Alu 1 279 -33 378 0 0 0 chr15 63238720 63238762 -22456992 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 573 318 77 36 chr15 63238947 63239309 -22456445 - L3 LINE CR1 -229 1348 972 2012 125 4 11 chr15 63239516 63239797 -22455957 + AluSx SINE Alu 1 279 -33 273 29 0 0 chr15 63239798 63239832 -22455922 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 215 170 38 19 chr15 63239957 63240010 -22455744 + L2 LINE L2 3217 3270 -2 2111 134 0 0 chr15 63240664 63240978 -22454776 + AluSx SINE Alu 1 314 0 2406 76 0 16 chr15 63241635 63241949 -22453805 - AluY SINE Alu -2 309 1 2390 56 0 21 chr15 63241956 63242285 -22453469 - AluSg SINE Alu 0 323 1 332 299 103 46 chr15 63242711 63242992 -22452762 + L1ME4a LINE L1 5565 5861 -260 958 163 0 0 chr15 63243003 63243156 -22452598 - FRAM SINE Alu -6 170 18 201 206 39 20 chr15 63243298 63243400 -22452354 + (TA)n Simple_repeat Simple_repeat 1 104 0 2340 110 0 3 chr15 63243430 63243740 -22452014 + AluSg SINE Alu 1 309 -1 947 73 16 0 chr15 63244380 63244504 -22451250 - AluSp/q SINE Alu -11 302 177 18316 46 57 3 chr15 63244615 63246914 -22448840 - L1P LINE L1 -3722 2424 2 1934 155 10 0 chr15 63248057 63248360 -22447394 + AluSx SINE Alu 1 306 -6 186 176 135 27 chr15 63250119 63250193 -22445561 - L2 LINE L2 -43 3229 3148 416 312 69 17 chr15 63250935 63251166 -22444588 + MIR SINE MIR 20 262 0 201 239 0 0 chr15 63251636 63251682 -22444072 - MIR SINE MIR -120 88 43 204 300 0 0 chr15 63252076 63252126 -22443628 - MIR SINE MIR -64 144 95 587 111 11 0 chr15 63252267 63252357 -22443397 - FLAM_A SINE Alu -5 137 47 258 105 0 0 chr15 63254017 63254055 -22441699 + (CA)n Simple_repeat Simple_repeat 1 38 0 1883 218 89 10 chr15 63254056 63254538 -22441216 - MLT2B1 LTR ERVL 0 520 1 1987 167 38 12 chr15 63254563 63254904 -22440850 + MLT1A1 LTR MaLR 16 365 0 1961 117 0 94 chr15 63254930 63255271 -22440483 - AluSx SINE Alu -3 309 1 205 277 0 15 chr15 63256117 63256182 -22439572 + MIR3 SINE MIR 113 176 -32 212 184 0 0 chr15 63256234 63256272 -22439482 + L2 LINE L2 3227 3264 -8 192 273 18 0 chr15 63256289 63256344 -22439410 + L2 LINE L2 3209 3264 -8 22 0 0 0 chr15 63258769 63258791 -22436963 + AT_rich Low_complexity Low_complexity 1 22 0 2366 66 0 17 chr15 63259353 63259654 -22436100 - AluY SINE Alu -15 296 1 686 126 236 0 chr15 63259826 63259953 -22435801 - AluSp SINE Alu -19 294 138 367 254 18 36 chr15 63259963 63260073 -22435681 - L1ME4a LINE L1 -271 5850 5743 1692 91 9 0 chr15 63260478 63260698 -22435056 + AluSc SINE Alu 79 300 -9 738 229 62 29 chr15 63260806 63261016 -22434738 + MIR SINE MIR 7 223 -39 1810 167 7 20 chr15 63261042 63261347 -22434407 + AluJo SINE Alu 1 301 -11 2081 135 3 3 chr15 63262270 63262573 -22433181 + AluSx SINE Alu 1 303 -9 286 250 172 0 chr15 63264094 63264210 -22431544 - MIR3 SINE MIR -26 182 47 790 214 36 116 chr15 63264648 63264717 -22431037 - MLT1H LTR MaLR -7 542 469 2237 125 0 0 chr15 63264717 63265028 -22430726 - AluY SINE Alu 0 311 1 790 214 36 116 chr15 63265028 63265451 -22430303 - MLT1H LTR MaLR -80 469 12 1904 128 35 17 chr15 63265840 63266130 -22429624 - AluSq SINE Alu -18 295 1 270 0 0 0 chr15 63266793 63266823 -22428931 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 503 320 152 10 chr15 63266829 63267223 -22428531 - L2 LINE L2 -23 3290 2841 521 323 100 14 chr15 63267931 63268361 -22427393 + L2 LINE L2 2806 3272 0 2246 95 20 10 chr15 63268662 63268958 -22426796 - AluSx SINE Alu -13 299 1 558 267 106 11 chr15 63269765 63269945 -22425809 + MIR SINE MIR 2 198 -64 2196 115 9 35 chr15 63270562 63270640 -22425114 - MER51B LTR ERV1 -2 375 296 2110 95 60 0 chr15 63270640 63270925 -22424829 + AluSx SINE Alu 1 302 -10 2196 115 9 35 chr15 63270925 63271186 -22424568 - MER51B LTR ERV1 -81 296 45 550 108 140 11 chr15 63271191 63271284 -22424470 - MER51A LTR ERV1 -529 105 1 239 299 0 13 chr15 63271288 63271365 -22424389 - MIR SINE MIR -117 91 16 1960 121 15 11 chr15 63271643 63271915 -22423839 - AluSx SINE Alu -39 273 1 189 318 48 0 chr15 63272120 63272183 -22423571 - MIR SINE MIR -113 149 84 2282 121 0 3 chr15 63272400 63272707 -22423047 - AluSp SINE Alu -7 306 1 2591 64 0 3 chr15 63272713 63273025 -22422729 - AluY SINE Alu 0 311 1 396 0 0 0 chr15 63273067 63273111 -22422643 + (TA)n Simple_repeat Simple_repeat 1 44 0 3663 154 88 0 chr15 63273111 63273771 -22421983 - L1MB7 LINE L1 -63 6121 5404 1806 163 29 32 chr15 63273834 63274177 -22421577 - MLT1A1 LTR MaLR -1 364 23 214 254 42 56 chr15 63274847 63274918 -22420836 - L2 LINE L2 -5 3267 3198 337 263 76 63 chr15 63275081 63275364 -22420390 - L2 LINE L2 -218 3054 2766 364 306 122 29 chr15 63275370 63275746 -22420008 + L1ME4a LINE L1 5709 6119 -2 23 0 0 0 chr15 63275845 63275868 -22419886 + AT_rich Low_complexity Low_complexity 1 23 0 1346 127 79 9 chr15 63276100 63276329 -22419425 - L1PB4 LINE L1 -7 6149 5905 1607 179 15 81 chr15 63276651 63277048 -22418706 - MLT1A2 LTR MaLR 0 374 4 392 258 155 47 chr15 63277570 63277667 -22418087 - L1ME4a LINE L1 -11 6110 6025 2037 112 0 85 chr15 63277667 63277997 -22417757 + AluSx SINE Alu 1 302 -10 392 258 155 47 chr15 63277997 63278115 -22417639 - L1ME4a LINE L1 -96 6025 5921 542 126 0 0 chr15 63278115 63278202 -22417552 - L1MA3 LINE L1 0 6305 6219 392 258 155 47 chr15 63278202 63278449 -22417305 - L1ME4a LINE L1 -200 5921 5584 807 280 112 21 chr15 63278525 63278568 -22417186 - L1ME4a LINE L1 -544 5577 5539 2354 112 0 6 chr15 63278568 63278882 -22416872 + AluSx SINE Alu 1 312 0 807 280 112 21 chr15 63278882 63279898 -22415856 - L1ME4a LINE L1 -582 5539 4409 522 199 352 0 chr15 63280165 63280381 -22415373 + L1ME4a LINE L1 5527 5818 -303 2177 119 0 10 chr15 63280381 63280693 -22415061 - AluSx SINE Alu -3 309 1 282 268 7 14 chr15 63280780 63280922 -22414832 + (TA)n Simple_repeat Simple_repeat 2 142 0 236 192 77 0 chr15 63280931 63280983 -22414771 + L1ME4a LINE L1 5994 6049 -72 23 33 0 0 chr15 63281004 63281034 -22414720 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr15 63281392 63281424 -22414330 + AT_rich Low_complexity Low_complexity 1 32 0 237 216 0 20 chr15 63281463 63281514 -22414240 - L2 LINE L2 0 3313 3264 2169 125 0 0 chr15 63281522 63281819 -22413935 - AluSx SINE Alu -13 299 3 2087 105 0 87 chr15 63282110 63282296 -22413458 - AluSx SINE Alu -9 303 157 2171 86 29 4 chr15 63282296 63282576 -22413178 - AluSx SINE Alu -25 287 1 2087 105 0 87 chr15 63282576 63282721 -22413033 - AluSx SINE Alu -155 157 1 1385 201 117 0 chr15 63282890 63283163 -22412591 + AluSx SINE Alu 2 306 -6 23 0 0 0 chr15 63283368 63283391 -22412363 + AT_rich Low_complexity Low_complexity 1 23 0 474 184 0 37 chr15 63283554 63283663 -22412091 + MIR SINE MIR 47 151 -111 1238 48 0 0 chr15 63283672 63283817 -22411937 + AluSq SINE Alu 153 297 -16 1003 62 0 0 chr15 63285510 63285639 -22410115 - L1MA5 LINE L1 0 6300 6172 2137 125 0 10 chr15 63285677 63285973 -22409781 + AluSx SINE Alu 1 293 -19 435 285 155 26 chr15 63286122 63286315 -22409439 - MIR SINE MIR -16 246 29 355 276 9 9 chr15 63286318 63286434 -22409320 - MER5B DNA MER1_type 0 178 63 232 379 73 11 chr15 63286512 63286784 -22408970 + L3 LINE CR1 531 819 -758 248 172 242 20 chr15 63287311 63287410 -22408344 - L1ME3 LINE L1 -16 6146 6026 * 1044 195 31 9 chr15 63287382 63287608 -22408146 - L1MC3 LINE L1 -63 7722 7492 587 142 71 0 chr15 63287608 63287721 -22408033 - L1ME3 LINE L1 -802 5440 5320 228 171 0 0 chr15 63287722 63287763 -22407991 - L1MB7 LINE L1 -18 6166 6126 2332 86 17 0 chr15 63287780 63288071 -22407683 - AluSx SINE Alu -16 296 1 3924 151 43 52 chr15 63288071 63288161 -22407593 - L1MB7 LINE L1 -44 6140 6051 2235 127 0 0 chr15 63288161 63288460 -22407294 - AluSx SINE Alu -13 299 1 3924 151 43 52 chr15 63288460 63288712 -22407042 - L1MB7 LINE L1 -133 6051 5798 1745 176 10 7 chr15 63288712 63289008 -22406746 - AluJb SINE Alu -15 297 1 3924 151 43 52 chr15 63289008 63289453 -22406301 - L1MB7 LINE L1 -386 5798 5359 2083 127 28 0 chr15 63289453 63289744 -22406010 - AluSx SINE Alu -13 299 1 1206 227 26 0 chr15 63289746 63290015 -22405739 - L1MB7 LINE L1 -1028 5118 4843 2499 69 23 0 chr15 63290559 63290864 -22404890 - AluSp SINE Alu -1 312 1 247 169 77 0 chr15 63292493 63292558 -22403196 - MIR SINE MIR -114 148 79 2112 87 38 10 chr15 63292845 63293133 -22402621 - AluSq SINE Alu -17 296 1 684 181 84 24 chr15 63294369 63294412 -22401342 - MER51C LTR ERV1 -27 613 574 2309 103 0 10 chr15 63294412 63294722 -22401032 + AluSx SINE Alu 1 307 -5 684 181 84 24 chr15 63294722 63294844 -22400910 - MER51C LTR ERV1 -66 574 438 1549 106 29 0 chr15 63295055 63295263 -22400491 + AluSq SINE Alu 1 214 -99 707 278 44 35 chr15 63295295 63295395 -22400359 + L1M4 LINE L1 4638 4736 -1410 1624 222 41 84 chr15 63295395 63295941 -22399813 - LTR9 LTR ERV1 0 612 97 2572 47 3 0 chr15 63295941 63296239 -22399515 + AluY SINE Alu 1 299 -12 1624 222 41 84 chr15 63296239 63296332 -22399422 - LTR9 LTR ERV1 -515 97 1 707 278 44 35 chr15 63296332 63296569 -22399185 + L1M4 LINE L1 4736 4978 -1168 24 32 0 0 chr15 63296604 63296635 -22399119 + AT_rich Low_complexity Low_complexity 1 31 0 303 96 0 0 chr15 63296647 63296699 -22399055 + (T)n Simple_repeat Simple_repeat 1 52 0 1346 91 0 0 chr15 63296699 63296864 -22398890 - AluSq SINE Alu -148 165 1 694 267 177 53 chr15 63297046 63297479 -22398275 - HAL1 LINE L1 -616 1891 1513 3415 124 50 68 chr15 63297479 63298126 -22397628 + MER41B LTR ERV1 1 635 0 183 80 0 0 chr15 63298132 63298157 -22397597 + (TG)n Simple_repeat Simple_repeat 2 26 0 694 267 177 53 chr15 63298157 63298545 -22397209 - HAL1 LINE L1 -998 1509 960 1903 154 3 23 chr15 63298725 63298859 -22396895 + AluJo SINE Alu 1 136 -176 2291 113 0 16 chr15 63298859 63299168 -22396586 + AluSx SINE Alu 1 304 -8 2703 38 0 6 chr15 63299168 63299481 -22396273 + AluY SINE Alu 1 311 0 1903 154 3 23 chr15 63299481 63299651 -22396103 + AluJo SINE Alu 134 300 -12 2169 105 14 7 chr15 63300258 63300553 -22395201 + AluSx SINE Alu 1 297 -15 1750 155 13 43 chr15 63300563 63300866 -22394888 + AluJo SINE Alu 1 294 -18 2441 74 0 3 chr15 63301093 63301391 -22394363 + AluY SINE Alu 1 297 -14 2232 110 10 3 chr15 63302016 63302325 -22393429 + AluSp SINE Alu 2 312 -1 2347 86 0 13 chr15 63302509 63302812 -22392942 + AluY SINE Alu 1 299 -12 1811 194 24 22 chr15 63303128 63303499 -22392255 - MLT1A2 LTR MaLR -2 372 1 346 305 57 21 chr15 63303578 63303719 -22392035 - MIR SINE MIR -116 146 1 306 300 111 21 chr15 63303998 63304241 -22391513 + L1ME LINE L1 5458 5722 -399 2296 98 0 7 chr15 63304492 63304789 -22390965 - AluSp SINE Alu -18 295 1 2213 120 0 3 chr15 63304789 63305090 -22390664 - AluSx SINE Alu -12 300 1 2387 94 3 0 chr15 63305100 63305407 -22390347 - AluSp SINE Alu -5 308 1 246 226 0 0 chr15 63305413 63305466 -22390288 - L1ME LINE L1 -297 5824 5772 2325 79 10 7 chr15 63305478 63305782 -22389972 - AluSx SINE Alu -7 305 1 1038 103 0 7 chr15 63305782 63305918 -22389836 - AluSq/x SINE Alu -178 135 1 460 135 0 0 chr15 63306663 63306737 -22389017 + AluS SINE Alu 232 305 -7 3472 154 47 16 chr15 63306737 63307349 -22388405 + L1MCa LINE L1 90 720 -5706 930 115 8 0 chr15 63307670 63307800 -22387954 + FLAM_C SINE Alu 1 131 -12 270 48 24 0 chr15 63308678 63308720 -22387034 - AluSc SINE Alu -6 293 251 231 190 0 0 chr15 63309348 63309406 -22386348 + (CCA)n Simple_repeat Simple_repeat 2 59 0 639 71 0 0 chr15 63312168 63312252 -22383502 - AluY SINE Alu -9 302 219 2131 78 4 4 chr15 63312252 63312520 -22383234 - AluY SINE Alu -43 268 1 2215 111 10 3 chr15 63312520 63312817 -22382937 - AluSg SINE Alu -11 299 1 25 31 0 0 chr15 63313142 63313174 -22382580 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 63313404 63313425 -22382329 + AT_rich Low_complexity Low_complexity 1 21 0 2197 81 7 7 chr15 63313607 63313905 -22381849 - AluSc SINE Alu -11 298 1 2372 159 95 19 chr15 63315380 63315845 -22379909 - MLT1D LTR MaLR 0 505 6 224 238 219 19 chr15 63316252 63316357 -22379397 + L2 LINE L2 3183 3308 -5 672 231 8 0 chr15 63317459 63317589 -22378165 + FLAM_C SINE Alu 1 131 -2 807 310 131 50 chr15 63318100 63318958 -22376796 + L1MC/D LINE L1 2438 3454 -2692 1387 154 124 0 chr15 63318958 63319217 -22376537 - AluJb SINE Alu -21 291 1 807 310 131 50 chr15 63319217 63319556 -22376198 + L1MC/D LINE L1 3454 3764 -2382 356 231 58 0 chr15 63319578 63319699 -22376055 - L1ME4a LINE L1 -1 6120 5993 412 316 29 15 chr15 63319710 63319916 -22375838 + L1MC/D LINE L1 3769 3977 -2169 235 299 111 0 chr15 63320254 63320371 -22375383 + L1MC/D LINE L1 5770 5899 -1909 1761 102 64 67 chr15 63320774 63321087 -22374667 - AluSx SINE Alu 0 312 1 816 223 0 0 chr15 63321378 63321535 -22374219 - FRAM SINE Alu -21 155 1 1913 121 10 13 chr15 63321634 63321939 -22373815 + AluSx SINE Alu 2 305 -7 515 202 65 16 chr15 63322197 63322321 -22373433 + L1ME4a LINE L1 5490 5619 -502 677 280 37 80 chr15 63322331 63322706 -22373048 - MLT1I LTR MaLR -13 396 38 287 280 61 15 chr15 63322726 63322858 -22372896 + L1ME4a LINE L1 5615 5752 -369 354 269 76 27 chr15 63322877 63323100 -22372654 + L1ME4a LINE L1 5813 6046 -75 450 94 0 0 chr15 63323682 63323746 -22372008 + (CA)n Simple_repeat Simple_repeat 1 64 0 239 228 174 11 chr15 63325026 63325118 -22370636 + MIR SINE MIR 41 147 -61 371 150 0 17 chr15 63327442 63327502 -22368252 - L2 LINE L2 -3 3310 3252 246 175 88 0 chr15 63329190 63329247 -22366507 - MIR SINE MIR -115 147 86 230 403 16 0 chr15 63329862 63329986 -22365768 - MIR SINE MIR -50 212 87 666 159 35 0 chr15 63330122 63330235 -22365519 + FLAM_A SINE Alu 12 128 -14 22 35 0 0 chr15 63330238 63330267 -22365487 + AT_rich Low_complexity Low_complexity 1 29 0 2127 118 0 3 chr15 63332584 63332890 -22362864 + AluSx SINE Alu 1 305 -7 2275 70 30 0 chr15 63333516 63333814 -22361940 + AluSc SINE Alu 1 307 -2 1634 152 14 21 chr15 63334799 63335109 -22360645 + AluJo SINE Alu 5 312 0 411 149 14 40 chr15 63335400 63335474 -22360280 + MIR SINE MIR 77 148 -60 1839 197 22 22 chr15 63335497 63335868 -22359886 + MLT1A2 LTR MaLR 4 374 0 2255 105 0 0 chr15 63335887 63336193 -22359561 - AluSx SINE Alu -6 306 1 499 309 100 42 chr15 63336403 63336714 -22359040 - L1M4 LINE L1 -1530 4616 4288 1747 167 0 22 chr15 63336747 63337058 -22358696 - AluJb SINE Alu -8 304 1 285 285 19 6 chr15 63337137 63337295 -22358459 + (CA)n Simple_repeat Simple_repeat 1 160 0 192 97 0 0 chr15 63337778 63337809 -22357945 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2117 85 41 0 chr15 63338429 63338722 -22357032 + AluSq SINE Alu 1 305 -8 750 257 26 9 chr15 63338756 63338982 -22356772 + L1MC5 LINE L1 7701 7930 -31 348 287 132 0 chr15 63338989 63339118 -22356636 + L1ME4a LINE L1 5285 5430 -734 2012 123 0 0 chr15 63339118 63339403 -22356351 + AluSx SINE Alu 1 285 -27 566 63 13 0 chr15 63339413 63339492 -22356262 + (GA)n Simple_repeat Simple_repeat 1 80 0 307 95 0 0 chr15 63339492 63339534 -22356220 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 280 280 104 31 chr15 63339549 63339912 -22355842 + L1ME4a LINE L1 5480 5869 -252 388 259 67 7 chr15 63339934 63340069 -22355685 + L1ME4a LINE L1 5975 6117 -4 1749 109 9 106 chr15 63340209 63340540 -22355214 + AluSx SINE Alu 1 299 -13 647 129 10 0 chr15 63340555 63340656 -22355098 - AluSq/x SINE Alu -179 133 32 410 174 184 10 chr15 63340930 63341028 -22354726 + FLAM_C SINE Alu 13 127 -16 295 267 141 10 chr15 63343170 63343376 -22352378 + L1MC5 LINE L1 7709 8041 -1 204 245 157 39 chr15 63343912 63344014 -22351740 + L2 LINE L2 3158 3271 -1 6995 78 9 1 chr15 63344234 63345119 -22350635 + THE1B-int LTR MaLR 677 1568 -12 2224 142 31 19 chr15 63345126 63345485 -22350269 + THE1B LTR MaLR 2 364 0 322 306 139 12 chr15 63345525 63345698 -22350056 + L1ME LINE L1 4768 4962 -1184 407 328 53 53 chr15 63346154 63346493 -22349261 + L1ME LINE L1 5413 5743 -378 1427 139 19 4 chr15 63346674 63346932 -22348822 - L1P LINE L1 -755 5391 5130 782 87 0 56 chr15 63346923 63347049 -22348705 + L1PA13 LINE L1 5914 6032 -131 * 279 0 0 0 chr15 63347101 63347132 -22348622 + (TA)n Simple_repeat Simple_repeat 2 32 0 2083 117 3 10 chr15 63347132 63347439 -22348315 - AluSx SINE Alu -7 305 1 1557 196 62 3 chr15 63347522 63347858 -22347896 + MER66A LTR ERV1 123 478 0 457 295 65 41 chr15 63347940 63348037 -22347717 - L1ME4a LINE L1 -201 5920 5827 2213 110 3 0 chr15 63348037 63348347 -22347407 - AluSx SINE Alu -1 311 1 457 295 65 41 chr15 63348347 63348588 -22347166 - L1ME4a LINE L1 -294 5827 5574 251 324 65 7 chr15 63348817 63348956 -22346798 + MLT1L LTR MaLR 116 262 -353 489 293 85 41 chr15 63348965 63349211 -22346543 + MLT1J LTR MaLR 236 492 -19 1147 298 121 31 chr15 63351410 63352095 -22343659 + ERVL LTR ERVL 3890 4636 -1128 483 330 71 13 chr15 63352132 63352356 -22343398 + ERVL LTR ERVL 4776 5012 -752 675 252 100 33 chr15 63354699 63354909 -22340845 - LTR33 LTR ERVL -297 224 1 305 343 105 14 chr15 63354916 63355059 -22340695 - L2 LINE L2 -1 3271 3116 522 296 32 83 chr15 63355625 63355749 -22340005 - MIR SINE MIR -21 241 135 2139 113 3 0 chr15 63355749 63356058 -22339696 - AluSx SINE Alu -2 310 1 522 296 32 83 chr15 63356058 63356186 -22339568 - MIR SINE MIR -127 135 2 385 282 0 0 chr15 63356922 63357007 -22338747 - MIR3 SINE MIR -54 154 70 572 250 63 65 chr15 63357086 63357227 -22338527 - L1ME LINE L1 -4891 1189 1049 1781 158 3 0 chr15 63357227 63357511 -22338243 - AluJb SINE Alu -21 291 7 572 250 63 65 chr15 63357511 63357813 -22337941 - L1ME LINE L1 -5031 1049 750 1803 156 0 7 chr15 63357817 63358118 -22337636 + AluJb SINE Alu 14 312 0 1981 137 10 16 chr15 63358123 63358436 -22337318 - Tigger1 DNA MER2_type -139 2279 1969 579 234 5 68 chr15 63358444 63358666 -22337088 + L1ME3A LINE L1 5744 5951 -219 1065 181 31 44 chr15 63358684 63358911 -22336843 + MER58A DNA MER1_type 1 224 0 279 173 19 0 chr15 63360390 63360442 -22335312 + L3 LINE CR1 1524 1576 -1 1970 155 10 0 chr15 63362615 63362918 -22332836 + AluSx SINE Alu 1 306 -6 213 192 329 14 chr15 63363819 63363892 -22331862 + MIR3 SINE MIR 84 179 -29 780 195 123 66 chr15 63364724 63365042 -22330712 + L1ME LINE L1 5483 5818 -303 2430 92 0 0 chr15 63365875 63366178 -22329576 - AluSg SINE Alu -2 308 6 1551 174 17 31 chr15 63366178 63366471 -22329283 - AluJo SINE Alu -11 301 13 2183 45 0 0 chr15 63366997 63367241 -22328513 + AluY SINE Alu 56 299 -12 207 281 0 0 chr15 63367341 63367405 -22328349 + A-rich Low_complexity Low_complexity 1 64 0 327 354 21 14 chr15 63368326 63368470 -22327284 + MER5A DNA MER1_type 17 161 -28 249 329 51 0 chr15 63369530 63369609 -22326145 - MIR SINE MIR -126 136 54 2426 96 0 0 chr15 63369614 63369915 -22325839 - AluSg1 SINE Alu -7 302 2 2193 222 88 15 chr15 63369997 63370542 -22325212 + MLT1E LTR MaLR 1 585 -8 906 282 99 87 chr15 63372117 63372293 -22323461 + L1M4 LINE L1 4191 4363 -1783 2040 128 3 10 chr15 63372293 63372589 -22323165 + AluSq SINE Alu 1 294 -19 906 282 99 87 chr15 63372589 63372701 -22323053 + L1M4 LINE L1 4363 4472 -1674 706 229 64 13 chr15 63372701 63372858 -22322896 + FAM SINE Alu 1 165 -10 906 282 99 87 chr15 63372858 63373202 -22322552 + L1M4 LINE L1 4472 4832 -1314 2372 101 0 0 chr15 63374750 63375048 -22320706 - AluSg SINE Alu -12 298 1 406 340 43 11 chr15 63375599 63375784 -22319970 - L2 LINE L2 -568 2746 2556 390 195 39 0 chr15 63375818 63375883 -22319871 + L1MCa LINE L1 21 91 -6335 2195 84 0 21 chr15 63375883 63376167 -22319587 + AluSp SINE Alu 1 278 -35 390 195 39 0 chr15 63376167 63376178 -22319576 + L1MCa LINE L1 91 100 -6326 956 140 0 7 chr15 63376264 63376407 -22319347 + AluSq/x SINE Alu 1 142 -170 2154 133 7 0 chr15 63376407 63376716 -22319038 + AluSx SINE Alu 1 311 -1 10852 152 85 30 chr15 63376716 63378986 -22316768 + L1MCa LINE L1 108 2539 -3887 2490 80 0 3 chr15 63378986 63379286 -22316468 - AluSp SINE Alu -14 299 1 10852 152 85 30 chr15 63379286 63379603 -22316151 + L1MCa LINE L1 2539 2837 -3589 1890 164 6 6 chr15 63379625 63379937 -22315817 + AluSx SINE Alu 1 312 0 716 170 35 0 chr15 63379945 63380116 -22315638 + GA-rich Low_complexity Low_complexity 1 177 0 780 224 37 21 chr15 63380133 63380374 -22315380 + L1MCa LINE L1 2864 3108 -3318 2058 136 16 89 chr15 63380375 63380869 -22314885 + L1MB8 LINE L1 5718 6175 -3 1233 177 104 19 chr15 63380870 63381277 -22314477 + LTR54 LTR ERV1 14 400 -3 22 0 0 0 chr15 63381291 63381313 -22314441 + AT_rich Low_complexity Low_complexity 1 22 0 293 309 153 15 chr15 63381313 63381700 -22314054 - L2 LINE L2 -814 2500 1994 2650 157 37 31 chr15 63381757 63382299 -22313455 - LTR10A LTR ERV1 -64 545 1 248 115 19 39 chr15 63382321 63382373 -22313381 - LTR10B LTR ERV1 -496 51 1 2448 107 7 0 chr15 63382405 63382713 -22313041 + AluSx SINE Alu 1 310 -2 2692 131 30 0 chr15 63382793 63383221 -22312533 - MER84 LTR ERVI 0 507 67 1994 100 42 42 chr15 63383484 63383794 -22311960 - AluSg SINE Alu 0 310 1 246 235 53 70 chr15 63383796 63383979 -22311775 + MER112 DNA MER1_type 6 158 -102 2301 99 3 0 chr15 63383979 63384281 -22311473 - AluSc SINE Alu -6 303 1 246 235 53 70 chr15 63384281 63384347 -22311407 + MER112 DNA MER1_type 158 224 -36 2456 94 0 0 chr15 63384365 63384674 -22311080 - AluY SINE Alu -2 309 1 764 297 179 24 chr15 63384926 63385163 -22310591 - L2 LINE L2 0 3272 3073 2275 132 0 0 chr15 63385163 63385466 -22310288 + AluSx SINE Alu 1 303 -9 764 297 179 24 chr15 63385466 63385919 -22309835 - L2 LINE L2 -199 3073 2475 553 316 49 16 chr15 63386038 63386203 -22309551 + MIR SINE MIR 8 185 -77 2252 111 0 10 chr15 63386203 63386500 -22309254 + AluSx SINE Alu 4 297 -15 553 316 49 16 chr15 63386500 63386581 -22309173 + MIR SINE MIR 185 262 0 2395 83 0 3 chr15 63387040 63387342 -22308412 - AluSg SINE Alu -9 301 1 553 307 131 47 chr15 63387449 63387857 -22307897 - L2 LINE L2 -224 3048 2606 217 183 33 83 chr15 63388193 63388253 -22307501 + L2 LINE L2 3139 3195 -77 435 230 0 82 chr15 63388317 63388452 -22307302 - MLT1K LTR MaLR -307 281 158 758 176 45 34 chr15 63388764 63388940 -22306814 - MER5B DNA MER1_type 0 178 1 346 359 34 21 chr15 63389323 63389560 -22306194 - L2 LINE L2 -823 2491 2252 236 159 0 45 chr15 63389854 63389898 -22305856 - L2 LINE L2 -4 3309 3268 487 96 0 12 chr15 63390823 63390906 -22304848 - L1MB3 LINE L1 0 6183 6102 319 291 51 0 chr15 63391065 63391144 -22304610 + MIR3 SINE MIR 78 160 -48 1741 103 0 4 chr15 63391607 63391839 -22303915 + AluSq SINE Alu 1 231 -82 435 141 0 0 chr15 63391910 63391981 -22303773 + Alu SINE Alu 225 295 -15 180 0 0 0 chr15 63392400 63392420 -22303334 + (A)n Simple_repeat Simple_repeat 1 20 0 2270 97 0 10 chr15 63392420 63392747 -22303007 + AluY SINE Alu 1 311 0 2290 114 0 19 chr15 63393076 63393393 -22302361 + AluSx SINE Alu 1 311 -1 228 235 20 0 chr15 63393890 63393941 -22301813 - L3 LINE CR1 -338 1239 1188 1558 178 0 66 chr15 63394106 63394410 -22301344 - AluJo SINE Alu -28 284 1 278 312 112 42 chr15 63394415 63394700 -22301054 - L3 LINE CR1 -375 1202 898 856 289 234 42 chr15 63395112 63397306 -22298448 + L2 LINE L2 594 3238 -75 590 123 110 58 chr15 63397307 63397432 -22298322 + Charlie5 DNA MER1_type 2423 2559 -26 1602 155 84 14 chr15 63397432 63397716 -22298038 - AluSx SINE Alu -8 304 1 590 123 110 58 chr15 63397716 63397745 -22298009 + Charlie5 DNA MER1_type 2559 2585 0 2303 93 0 20 chr15 63398953 63399253 -22296501 + AluSx SINE Alu 1 294 -18 363 323 131 48 chr15 63399531 63400172 -22295582 + L2 LINE L2 1805 2498 -816 2128 131 0 10 chr15 63400248 63400553 -22295201 + AluSx SINE Alu 1 302 -10 483 305 62 35 chr15 63400553 63400679 -22295075 + MIR SINE MIR 25 161 -101 3334 55 0 2 chr15 63400679 63401094 -22294660 + L1PA5 LINE L1 5741 6154 0 483 305 62 35 chr15 63401094 63401193 -22294561 + MIR SINE MIR 161 256 -6 1305 136 43 81 chr15 63401233 63401325 -22294429 + AluJo SINE Alu 48 142 -170 2222 82 35 0 chr15 63401325 63401607 -22294147 + AluY SINE Alu 1 292 -19 1305 136 43 81 chr15 63401607 63401772 -22293982 + AluJo SINE Alu 142 295 -17 2286 118 3 0 chr15 63402025 63402331 -22293423 + AluSx SINE Alu 1 307 -5 651 234 106 37 chr15 63402689 63402877 -22292877 - MIR SINE MIR -59 203 3 472 302 153 48 chr15 63402894 63403142 -22292612 + L2 LINE L2 2950 3223 -49 290 317 203 0 chr15 63403349 63403472 -22292282 + L2 LINE L2 3123 3270 -2 354 275 234 18 chr15 63403993 63404160 -22291594 - MIR SINE MIR -8 254 52 314 336 0 31 chr15 63404258 63404386 -22291368 - L3 LINE CR1 -190 1387 1264 22 0 0 0 chr15 63404901 63404923 -22290831 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 63405604 63405629 -22290125 + AT_rich Low_complexity Low_complexity 1 25 0 377 246 80 90 chr15 63406209 63406497 -22289257 + L1ME4a LINE L1 5835 6119 -2 2400 90 0 0 chr15 63406552 63406853 -22288901 + AluY SINE Alu 1 301 -10 917 208 116 42 chr15 63407193 63407560 -22288194 + L2 LINE L2 2756 3164 -149 271 329 36 36 chr15 63407865 63408002 -22287752 + L2 LINE L2 3161 3297 -16 558 288 156 37 chr15 63408650 63408855 -22286899 - L2 LINE L2 0 3313 3134 1864 125 0 52 chr15 63408855 63408973 -22286781 + AluSx SINE Alu 30 153 -159 2619 59 0 0 chr15 63408973 63409277 -22286477 + AluY SINE Alu 1 304 -7 1864 125 0 52 chr15 63409277 63409445 -22286309 + AluSx SINE Alu 153 301 -11 558 288 156 37 chr15 63409445 63409642 -22286112 - L2 LINE L2 -179 3134 2863 1186 259 239 48 chr15 63409683 63410557 -22285197 - L2 LINE L2 -563 2751 1711 324 206 59 0 chr15 63410561 63410586 -22285168 + MER3 DNA MER1_type 19 47 -162 961 146 146 0 chr15 63410586 63410764 -22284990 - MER3 DNA MER1_type 0 209 6 310 310 154 34 chr15 63410766 63411124 -22284630 - L2 LINE L2 -1636 1678 1278 381 260 0 0 chr15 63412557 63412634 -22283120 + MIR SINE MIR 73 149 -113 21 0 0 0 chr15 63413288 63413309 -22282445 + GC_rich Low_complexity Low_complexity 1 21 0 210 216 0 0 chr15 63413541 63413578 -22282176 + (CCG)n Simple_repeat Simple_repeat 2 38 0 33 56 0 0 chr15 63413579 63413633 -22282121 + GC_rich Low_complexity Low_complexity 1 54 0 412 216 128 10 chr15 63413880 63413982 -22281772 - MIR3 SINE MIR -21 187 74 2205 66 0 33 chr15 63414455 63414760 -22280994 + AluY SINE Alu 1 295 -16 815 85 7 78 chr15 63414770 63414911 -22280843 + AluSc SINE Alu 121 251 -58 2365 57 17 0 chr15 63415013 63415311 -22280443 + AluY SINE Alu 1 303 -8 2017 134 0 0 chr15 63415319 63415611 -22280143 + AluSx SINE Alu 1 292 -20 868 106 0 0 chr15 63415922 63416035 -22279719 + AluSc SINE Alu 1 113 -196 1638 144 0 19 chr15 63416044 63416308 -22279446 - AluJo SINE Alu -47 265 7 265 284 3 16 chr15 63416497 63416599 -22279155 - MER5A DNA MER1_type -71 107 7 1968 125 0 14 chr15 63417409 63417721 -22278033 + AluSx SINE Alu 2 309 0 353 267 20 33 chr15 63417815 63417949 -22277805 + MER103 DNA DNA 2 135 -31 1852 150 3 0 chr15 63417949 63418243 -22277511 - AluJo SINE Alu -17 295 1 353 267 20 33 chr15 63418243 63418258 -22277496 + MER103 DNA DNA 135 149 -17 562 247 148 6 chr15 63418461 63418623 -22277131 + MIR SINE MIR 4 188 -74 1645 162 3 24 chr15 63418737 63419033 -22276721 + AluJb SINE Alu 1 290 -22 1745 151 36 13 chr15 63419900 63420205 -22275549 + AluJo SINE Alu 1 312 0 707 218 167 18 chr15 63420231 63420506 -22275248 + L1MC5 LINE L1 7610 7925 -36 2147 112 0 10 chr15 63420518 63420830 -22274924 + AluSg SINE Alu 1 309 -1 918 132 0 0 chr15 63420990 63421126 -22274628 - FLAM_C SINE Alu -7 136 1 1117 141 31 5 chr15 63421136 63421327 -22274427 - L1MB5 LINE L1 -60 6114 5919 23 0 0 0 chr15 63421344 63421367 -22274387 + AT_rich Low_complexity Low_complexity 1 23 0 472 197 129 15 chr15 63421485 63421617 -22274137 - L1MC4a LINE L1 -1870 5938 5792 211 293 85 24 chr15 63421626 63421708 -22274046 - L2 LINE L2 -35 3237 3151 825 204 72 0 chr15 63422342 63422509 -22273245 + LTR47A LTR ERVL 274 452 0 191 333 0 0 chr15 63423017 63423089 -22272665 - L2 LINE L2 -1088 2226 2155 250 298 115 19 chr15 63423826 63423930 -22271824 - L2 LINE L2 0 3272 3159 225 119 0 0 chr15 63424293 63424335 -22271419 + (GA)n Simple_repeat Simple_repeat 1 42 0 225 65 0 0 chr15 63424336 63424367 -22271387 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr15 63424540 63424562 -22271192 + AT_rich Low_complexity Low_complexity 1 22 0 896 208 45 0 chr15 63424969 63425171 -22270583 - L1MB7 LINE L1 -23 6161 5951 1094 90 6 6 chr15 63425379 63425535 -22270219 - AluSp SINE Alu -118 195 40 647 126 0 0 chr15 63425535 63425630 -22270124 + AluSp/q SINE Alu 212 306 -7 359 279 205 16 chr15 63426224 63426414 -22269340 + MIR SINE MIR 21 246 -16 217 221 103 29 chr15 63426610 63426678 -22269076 - MIR SINE MIR -109 153 81 1556 119 0 0 chr15 63426708 63426927 -22268827 + AluSx SINE Alu 1 219 -93 480 158 0 0 chr15 63426927 63427003 -22268751 + AluSg/x SINE Alu 188 263 -49 2201 88 3 0 chr15 63427047 63427344 -22268410 + AluSp SINE Alu 1 298 -15 6801 82 23 12 chr15 63427687 63427712 -22268042 + L1MA2 LINE L1 5342 5365 -939 2127 89 14 0 chr15 63427712 63428004 -22267750 + AluSx SINE Alu 1 296 -16 6801 82 23 12 chr15 63428004 63428930 -22266824 + L1MA2 LINE L1 5365 6304 0 33 0 0 0 chr15 63428930 63428963 -22266791 + AT_rich Low_complexity Low_complexity 1 33 0 1965 91 4 7 chr15 63429210 63429513 -22266241 - AluSx SINE Alu 0 313 12 2200 88 14 0 chr15 63429603 63429900 -22265854 - AluSq SINE Alu -12 301 1 222 300 0 0 chr15 63430451 63430501 -22265253 - MIR3 SINE MIR -21 187 138 * 367 316 40 33 chr15 63430493 63430645 -22265109 - L2 LINE L2 -1 3271 3119 1889 139 0 10 chr15 63430789 63431090 -22264664 + AluSx SINE Alu 1 298 -14 290 305 127 92 chr15 63431115 63431430 -22264324 - L2 LINE L2 -10 3262 2937 2255 105 45 63 chr15 63431501 63431650 -22264104 + THE1C LTR MaLR 1 151 -224 2269 89 0 0 chr15 63431650 63431943 -22263811 - AluSc SINE Alu -16 293 1 2255 105 45 63 chr15 63431943 63432175 -22263579 + THE1C LTR MaLR 151 375 0 206 333 50 50 chr15 63432175 63432295 -22263459 - L2 LINE L2 -456 2858 2739 21 36 0 0 chr15 63432351 63432379 -22263375 + AT_rich Low_complexity Low_complexity 1 28 0 1060 311 66 29 chr15 63432382 63433003 -22262751 - L2 LINE L2 -605 2709 2066 228 163 0 0 chr15 63433011 63433054 -22262700 + (TA)n Simple_repeat Simple_repeat 2 44 0 1605 192 59 26 chr15 63433129 63433520 -22262234 + MER74B LTR ERVL 167 570 -52 360 308 102 67 chr15 63433554 63434035 -22261719 - L2 LINE L2 -1223 2091 1594 223 265 73 0 chr15 63434123 63434191 -22261563 + MIR SINE MIR 71 143 -119 3989 131 25 0 chr15 63434320 63434960 -22260794 + L1MB3 LINE L1 5528 6183 0 964 152 0 0 chr15 63435456 63435601 -22260153 - MER46A DNA MER2_type -90 146 2 2193 142 25 6 chr15 63435885 63436244 -22259510 - MER47A DNA MER2_type 0 366 1 217 335 86 60 chr15 63436252 63436504 -22259250 + L2 LINE L2 2201 2464 -850 2132 109 0 10 chr15 63436504 63436816 -22258938 - AluSx SINE Alu -3 309 1 217 335 86 60 chr15 63436816 63436864 -22258890 + L2 LINE L2 2464 2509 -805 2317 60 0 10 chr15 63436960 63437259 -22258495 - AluY SINE Alu -15 296 1 181 133 0 0 chr15 63437407 63437437 -22258317 - L2 LINE L2 -2 3270 3241 1368 182 18 7 chr15 63437464 63437750 -22258004 + AluJo SINE Alu 1 289 -23 198 317 104 110 chr15 63438898 63438955 -22256799 - L2 LINE L2 -2 3270 3214 1580 152 14 4 chr15 63438955 63439231 -22256523 + AluJo SINE Alu 1 279 -33 222 62 0 0 chr15 63439233 63439265 -22256489 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 198 317 104 110 chr15 63439265 63439368 -22256386 - L2 LINE L2 -59 3213 3108 311 316 116 60 chr15 63439745 63440160 -22255594 - L2 LINE L2 -623 2691 2254 2116 78 54 0 chr15 63441340 63441635 -22254119 - AluY SINE Alu 0 311 1 2217 91 17 0 chr15 63442176 63442473 -22253281 + AluSq SINE Alu 1 302 -11 2046 114 17 3 chr15 63442473 63442771 -22252983 + AluSg SINE Alu 1 302 -8 1797 145 17 10 chr15 63442974 63443270 -22252484 + AluJb SINE Alu 1 298 -14 23 0 0 0 chr15 63443381 63443404 -22252350 + AT_rich Low_complexity Low_complexity 1 23 0 291 270 99 27 chr15 63443662 63443773 -22251981 + L2 LINE L2 3187 3305 -8 24 0 0 0 chr15 63445436 63445460 -22250294 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 63445651 63445674 -22250080 + AT_rich Low_complexity Low_complexity 1 23 0 2115 104 10 0 chr15 63445684 63445973 -22249781 + AluSx SINE Alu 1 292 -20 1612 159 0 11 chr15 63446352 63446616 -22249138 + AluJo SINE Alu 1 261 -51 1999 132 7 0 chr15 63446652 63446948 -22248806 + AluSq SINE Alu 1 298 -15 226 305 66 32 chr15 63447488 63447626 -22248128 + MIR SINE MIR 51 191 -62 206 238 0 0 chr15 63447674 63447716 -22248038 + L2 LINE L2 3269 3310 -3 1814 132 31 3 chr15 63447949 63448236 -22247518 + AluSx SINE Alu 1 295 -17 31 26 0 0 chr15 63448743 63448781 -22246973 + AT_rich Low_complexity Low_complexity 1 38 0 2204 102 0 0 chr15 63449921 63450225 -22245529 + AluSx SINE Alu 1 304 -8 2189 61 0 11 chr15 63450782 63451113 -22244641 + AluY SINE Alu 6 333 0 2015 98 0 40 chr15 63451142 63451462 -22244292 + AluSq SINE Alu 1 308 0 214 160 0 40 chr15 63451589 63451639 -22244115 + T-rich Low_complexity Low_complexity 1 48 0 5903 63 51 44 chr15 63451639 63452587 -22243167 - SVA Other Other 0 1386 433 5448 68 39 51 chr15 63452599 63453613 -22242141 - SVA Other Other -518 868 5 1697 166 10 10 chr15 63453619 63453914 -22241840 - AluJo SINE Alu -17 295 1 330 0 0 0 chr15 63453938 63453973 -22241781 - Charlie5 DNA MER1_type -2549 63 29 1852 149 14 0 chr15 63455243 63455525 -22240229 - AluSx SINE Alu -20 292 7 2118 125 0 3 chr15 63456315 63456627 -22239127 - AluSx SINE Alu -1 311 1 280 321 67 36 chr15 63456769 63456962 -22238792 + MLT1L LTR MaLR 2 200 -415 1880 117 0 48 chr15 63457219 63457528 -22238226 - AluSg SINE Alu -16 294 1 2372 79 0 3 chr15 63457540 63457845 -22237909 - AluSp SINE Alu -9 304 1 276 344 53 8 chr15 63458011 63458142 -22237612 + MIR3 SINE MIR 26 162 -46 2184 110 0 0 chr15 63458167 63458466 -22237288 - AluSq SINE Alu -14 299 1 265 211 14 0 chr15 63458489 63458560 -22237194 + (TA)n Simple_repeat Simple_repeat 1 72 0 794 138 0 0 chr15 63458577 63458693 -22237061 - FLAM_C SINE Alu -16 117 2 22 35 0 0 chr15 63458827 63458856 -22236898 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr15 63459145 63459176 -22236578 + AT_rich Low_complexity Low_complexity 1 31 0 263 276 82 20 chr15 63459180 63459278 -22236476 - MARNA DNA Mariner -336 250 147 319 329 79 55 chr15 63459326 63459490 -22236264 + MIR3 SINE MIR 38 205 -3 2189 92 3 13 chr15 63459697 63460002 -22235752 - AluSq SINE Alu -11 302 1 2269 79 0 13 chr15 63460368 63460672 -22235082 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr15 63460762 63460783 -22234971 + AT_rich Low_complexity Low_complexity 1 21 0 1838 105 26 49 chr15 63460896 63461200 -22234554 + AluSq SINE Alu 1 297 -16 366 342 7 13 chr15 63461448 63461600 -22234154 - MER5B DNA MER1_type -24 154 4 2295 107 0 3 chr15 63462027 63462325 -22233429 + AluSx SINE Alu 1 297 -15 2203 114 0 0 chr15 63462328 63462626 -22233128 + AluSx SINE Alu 1 298 -14 2209 126 0 0 chr15 63462657 63462951 -22232803 + AluSx SINE Alu 3 296 -16 495 192 0 110 chr15 63463598 63463744 -22232010 - MIR SINE MIR -5 257 128 208 191 24 0 chr15 63464160 63464202 -22231552 - MIR3 SINE MIR -51 157 115 282 322 55 83 chr15 63465255 63465652 -22230102 - L2 LINE L2 -55 3217 2832 572 302 274 41 chr15 63466589 63467750 -22228004 - L2 LINE L2 -560 2754 1865 1933 99 20 26 chr15 63467750 63468054 -22227700 - AluSx SINE Alu -10 302 1 572 302 274 41 chr15 63468054 63468618 -22227136 - L2 LINE L2 -1449 1865 627 641 152 0 38 chr15 63469096 63469201 -22226553 - FLAM_A SINE Alu -22 120 20 23 0 0 0 chr15 63469544 63469567 -22226187 + AT_rich Low_complexity Low_complexity 1 23 0 1782 152 28 14 chr15 63469802 63470092 -22225662 - AluJo SINE Alu -18 294 1 249 305 147 0 chr15 63470103 63470198 -22225556 + MIR SINE MIR 120 228 -34 2062 104 30 13 chr15 63470488 63470786 -22224968 + AluSx SINE Alu 1 303 -9 39 0 0 0 chr15 63470841 63470880 -22224874 + AT_rich Low_complexity Low_complexity 1 39 0 1729 153 32 14 chr15 63473490 63473772 -22221982 - AluSx SINE Alu -25 287 1 890 147 0 7 chr15 63473772 63473908 -22221846 - AluJo SINE Alu -175 137 3 1052 118 0 37 chr15 63474009 63474170 -22221584 - AluSg/x SINE Alu -13 299 145 854 61 0 0 chr15 63474271 63474369 -22221385 - AluSg SINE Alu -180 130 33 1048 73 0 0 chr15 63474370 63474506 -22221248 + AluY SINE Alu 176 311 0 1576 162 33 19 chr15 63474514 63474785 -22220969 + AluJo SINE Alu 16 290 -22 493 283 76 27 chr15 63475621 63475805 -22219949 - L2 LINE L2 -2 3311 3119 1671 152 52 4 chr15 63475979 63476277 -22219477 + AluSx SINE Alu 1 311 0 347 212 30 40 chr15 63476410 63476509 -22219245 - MIR SINE MIR -19 243 146 1235 218 13 40 chr15 63476559 63476857 -22218897 - AluJo SINE Alu -22 290 1 29 28 0 0 chr15 63476858 63476894 -22218860 + AT_rich Low_complexity Low_complexity 1 36 0 2062 97 42 3 chr15 63476897 63477186 -22218568 + AluSx SINE Alu 1 300 -12 2076 114 7 4 chr15 63477188 63477468 -22218286 + AluSc SINE Alu 1 281 -28 552 291 46 81 chr15 63477714 63477887 -22217867 - L1ME LINE L1 -348 5773 5596 1837 155 0 32 chr15 63477887 63478196 -22217558 - AluJb SINE Alu -13 299 1 552 291 46 81 chr15 63478196 63478389 -22217365 - L1ME LINE L1 -525 5596 5428 1798 149 0 10 chr15 63478389 63478677 -22217077 - AluJb SINE Alu -27 285 1 552 291 46 81 chr15 63478677 63478834 -22216920 - L1ME LINE L1 -693 5428 5267 1583 143 151 4 chr15 63479149 63479408 -22216346 - AluJb SINE Alu -5 297 1 1502 135 13 26 chr15 63479686 63479915 -22215839 - AluSq SINE Alu -87 226 1 699 254 97 38 chr15 63480319 63480607 -22215147 + L2 LINE L2 2995 3299 -14 780 128 9 0 chr15 63480609 63480718 -22215036 + AluSq/x SINE Alu 1 110 -202 598 152 56 32 chr15 63481016 63481051 -22214703 - L1MB3 LINE L1 -2 6181 6148 2473 67 0 0 chr15 63481051 63481348 -22214406 - AluY SINE Alu -14 297 1 598 152 56 32 chr15 63481348 63481437 -22214317 - L1MB3 LINE L1 -35 6148 6054 811 241 131 29 chr15 63481589 63481797 -22213957 + MER20B DNA MER1_type 56 300 -483 2432 86 3 0 chr15 63481797 63482101 -22213653 - AluSp SINE Alu -8 305 1 811 241 131 29 chr15 63482101 63482166 -22213588 + MER20B DNA MER1_type 300 357 -426 365 219 158 0 chr15 63482167 63482249 -22213505 + MER82 DNA MER2_type 1 95 -558 261 83 0 0 chr15 63482249 63482285 -22213469 + (TG)n Simple_repeat Simple_repeat 2 37 0 2060 114 7 3 chr15 63482351 63482649 -22213105 + AluSq SINE Alu 1 299 -14 324 351 27 14 chr15 63482669 63482817 -22212937 - MIR SINE MIR -111 151 2 701 235 96 6 chr15 63482838 63483004 -22212750 + MER82 DNA MER2_type 444 624 -29 1219 201 114 3 chr15 63483070 63483394 -22212360 + MER20B DNA MER1_type 423 782 -1 500 341 127 3 chr15 63483486 63484054 -22211700 - L1M4 LINE L1 -2145 4001 3364 482 266 104 22 chr15 63484126 63484442 -22211312 - L1M4 LINE L1 -2892 3254 2913 1849 139 24 7 chr15 63484870 63485164 -22210590 + AluSx SINE Alu 1 299 -13 1700 186 41 10 chr15 63485873 63486260 -22209494 + L1PB2 LINE L1 4961 5359 -787 3282 37 0 0 chr15 63486261 63486640 -22209114 - L1PA5 LINE L1 -453 5701 5323 3616 65 0 0 chr15 63486642 63487070 -22208684 + L1PA5 LINE L1 5726 6153 -1 4735 94 9 22 chr15 63487070 63487321 -22208433 + L1PB2 LINE L1 5356 5609 -542 2153 128 0 0 chr15 63487321 63487617 -22208137 + AluSg SINE Alu 1 296 -14 4735 94 9 22 chr15 63487617 63488057 -22207697 + L1PB2 LINE L1 5609 6038 -113 1331 151 10 0 chr15 63488063 63488269 -22207485 + AluSg/x SINE Alu 92 299 -11 505 264 144 65 chr15 63488284 63488359 -22207395 + L1MEc LINE L1 1565 1633 -4763 725 180 147 33 chr15 63488359 63488509 -22207245 + FAM SINE Alu 1 167 -8 505 264 144 65 chr15 63488509 63488801 -22206953 + L1MEc LINE L1 1633 1961 -4435 35 31 0 31 chr15 63488838 63488862 -22206892 + AT_rich Low_complexity Low_complexity 1 24 -38 1697 158 24 14 chr15 63488862 63489154 -22206600 - AluJo SINE Alu -13 299 5 35 31 0 31 chr15 63489154 63489193 -22206561 + AT_rich Low_complexity Low_complexity 24 62 0 833 136 7 29 chr15 63489260 63489400 -22206354 + AluJb SINE Alu 175 311 -1 1189 244 107 87 chr15 63489418 63489621 -22206133 + L1MEc LINE L1 2207 2404 -3811 1803 156 37 0 chr15 63489621 63489916 -22205838 + AluSx SINE Alu 1 306 -6 1189 244 107 87 chr15 63489916 63490292 -22205462 + L1MEc LINE L1 2404 2771 -3444 2160 138 0 0 chr15 63490292 63490603 -22205151 + AluSx SINE Alu 1 311 -1 1189 244 107 87 chr15 63490603 63491127 -22204627 + L1MEc LINE L1 2771 3333 -2882 595 280 34 14 chr15 63491112 63491406 -22204348 + L1MEc LINE L1 3676 3991 -2224 * 2432 220 61 47 chr15 63491382 63492235 -22203519 + L1MEc LINE L1 2106 6111 -128 479 221 0 29 chr15 63492570 63492674 -22203080 + FLAM_C SINE Alu 43 143 0 6430 177 35 50 chr15 63492712 63493081 -22202673 + L1PA16 LINE L1 3881 4254 -1912 2310 90 0 7 chr15 63493081 63493381 -22202373 + AluSq SINE Alu 1 298 -15 6430 177 35 50 chr15 63493381 63494771 -22200983 + L1PA16 LINE L1 4254 5663 -503 1983 151 0 16 chr15 63494771 63495075 -22200679 + AluSx SINE Alu 1 299 -13 6430 177 35 50 chr15 63495075 63495265 -22200489 + L1PA16 LINE L1 5663 5854 -312 360 43 0 0 chr15 63495265 63495311 -22200443 + (CA)n Simple_repeat Simple_repeat 2 47 0 6430 177 35 50 chr15 63495311 63495679 -22200075 + L1PA16 LINE L1 5854 6157 -9 2139 133 10 0 chr15 63495701 63496002 -22199752 + AluSx SINE Alu 1 304 -8 1757 165 57 7 chr15 63496165 63496462 -22199292 + AluJb SINE Alu 1 312 0 248 292 0 14 chr15 63496473 63496545 -22199209 + MIR SINE MIR 81 151 -111 2064 102 13 39 chr15 63496649 63496954 -22198800 - AluSx SINE Alu -15 297 1 2420 238 94 47 chr15 63497567 63497629 -22198125 - L2 LINE L2 0 3313 3255 363 44 0 0 chr15 63497629 63497674 -22198080 + (TA)n Simple_repeat Simple_repeat 2 46 0 2420 238 94 47 chr15 63497674 63497692 -22198062 - L2 LINE L2 -58 3255 3239 2077 116 0 0 chr15 63497692 63497968 -22197786 - AluSx SINE Alu -36 276 1 2420 238 94 47 chr15 63497968 63498142 -22197612 - L2 LINE L2 -74 3239 3075 1759 179 7 13 chr15 63498142 63498450 -22197304 + AluJb SINE Alu 1 306 -6 2420 238 94 47 chr15 63498450 63499157 -22196597 - L2 LINE L2 -238 3075 2301 24 0 0 0 chr15 63500368 63500392 -22195362 + AT_rich Low_complexity Low_complexity 1 24 0 1950 109 3 11 chr15 63500498 63500810 -22194944 + AluSq SINE Alu 1 310 0 876 148 0 7 chr15 63501398 63501533 -22194221 + AluJo SINE Alu 1 134 -178 515 293 179 53 chr15 63502309 63502746 -22193008 - L2 LINE L2 -1 3312 2821 323 335 31 13 chr15 63502749 63502945 -22192809 + MLT1J1 LTR MaLR 16 212 -197 280 190 25 25 chr15 63503024 63503103 -22192651 + MLT1J1 LTR MaLR 346 424 -22 1816 272 38 33 chr15 63503143 63503756 -22191998 - L2 LINE L2 -515 2799 2184 4704 155 89 1 chr15 63503914 63504709 -22191045 - MER6 DNA MER2_type 0 865 1 908 60 0 9 chr15 63504874 63504990 -22190764 - L1PA13 LINE L1 -2 6161 6047 228 277 0 0 chr15 63505108 63505155 -22190599 + L2 LINE L2 3255 3301 -12 563 237 76 0 chr15 63505797 63505915 -22189839 - MER69 DNA AcHobo -1868 658 532 1890 124 7 7 chr15 63505918 63506201 -22189553 - AluSx SINE Alu -4 308 26 274 213 120 0 chr15 63506234 63506342 -22189412 + L1ME4a LINE L1 5188 5308 -838 416 251 160 36 chr15 63506390 63506697 -22189057 + L1ME4a LINE L1 5554 5898 -223 1938 107 0 4 chr15 63506870 63507133 -22188621 - AluSg SINE Alu -7 303 42 2102 108 0 21 chr15 63508107 63508414 -22187340 - AluSx SINE Alu 0 301 1 2116 115 7 0 chr15 63509064 63509352 -22186402 + AluSx SINE Alu 1 290 -22 282 56 0 0 chr15 63510172 63510208 -22185546 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2113 108 17 0 chr15 63510256 63510544 -22185210 - AluSx SINE Alu -19 293 1 808 187 0 0 chr15 63510544 63510667 -22185087 + AluJb SINE Alu 175 297 -15 289 188 16 0 chr15 63510667 63510731 -22185023 - HsTC2 DNA Tc2 -1831 67 3 21 36 0 0 chr15 63510918 63510946 -22184808 + AT_rich Low_complexity Low_complexity 1 28 0 489 273 118 9 chr15 63511013 63511417 -22184337 + L1ME3A LINE L1 5004 5456 -714 273 57 0 0 chr15 63512147 63512182 -22183572 + (TG)n Simple_repeat Simple_repeat 2 36 0 275 240 107 60 chr15 63512197 63512356 -22183398 - MIR SINE MIR -61 201 38 522 207 52 67 chr15 63512469 63512662 -22183092 + L1ME3A LINE L1 5730 5919 -251 51 58 0 0 chr15 63513156 63513242 -22182512 + AT_rich Low_complexity Low_complexity 1 86 0 28 71 0 0 chr15 63513318 63513374 -22182380 + AT_rich Low_complexity Low_complexity 1 56 0 571 203 32 75 chr15 63513471 63513594 -22182160 - L1MC4 LINE L1 -15 8027 7913 369 0 0 0 chr15 63513594 63513635 -22182119 + (CA)n Simple_repeat Simple_repeat 2 42 0 571 203 32 75 chr15 63513635 63513698 -22182056 - L1MC4 LINE L1 -129 7913 7849 1799 149 40 0 chr15 63513700 63513976 -22181778 - AluSx SINE Alu -23 289 3 839 129 0 8 chr15 63513976 63514100 -22181654 - AluJb SINE Alu -179 133 11 414 230 64 42 chr15 63514125 63514310 -22181444 - L1MC4 LINE L1 -95 7713 7559 2265 69 16 33 chr15 63514362 63514665 -22181089 - AluY SINE Alu -13 298 1 263 324 27 0 chr15 63515183 63515257 -22180497 + MER5A DNA MER1_type 29 104 -85 803 201 10 81 chr15 63515444 63515653 -22180101 + MIR SINE MIR 68 261 -1 229 241 7 131 chr15 63515732 63515787 -22179967 + MIR SINE MIR 104 164 -98 2103 131 7 0 chr15 63515787 63516092 -22179662 + AluSx SINE Alu 1 307 -5 229 241 7 131 chr15 63516092 63516181 -22179573 + MIR SINE MIR 164 230 -32 2564 66 0 0 chr15 63516287 63516590 -22179164 - AluSc SINE Alu -6 303 1 301 310 101 16 chr15 63516614 63516743 -22179011 + MIR3 SINE MIR 19 158 -50 376 208 11 111 chr15 63516910 63516995 -22178759 + L1ME3A LINE L1 6047 6114 -56 1993 140 3 0 chr15 63516995 63517287 -22178467 - AluSx SINE Alu -19 293 1 376 208 11 111 chr15 63517287 63517339 -22178415 + L1ME3A LINE L1 6114 6170 0 183 344 0 62 chr15 63517553 63517649 -22178105 + MIR SINE MIR 49 138 -70 1507 126 138 0 chr15 63517679 63517925 -22177829 - AluSx SINE Alu -22 290 11 24 53 0 0 chr15 63517991 63518029 -22177725 + AT_rich Low_complexity Low_complexity 1 38 0 1296 171 67 0 chr15 63518369 63518386 -22177368 - AluJb SINE Alu -14 298 284 504 105 0 0 chr15 63518386 63518462 -22177292 + (TCCA)n Simple_repeat Simple_repeat 3 78 0 1296 171 67 0 chr15 63518462 63518684 -22177070 - AluJb SINE Alu -28 284 43 197 164 194 30 chr15 63518854 63518921 -22176833 - MIR SINE MIR -68 194 117 503 251 149 10 chr15 63519003 63519198 -22176556 + MIR SINE MIR 35 256 -6 427 267 110 40 chr15 63519198 63519524 -22176230 - HAL1 LINE L1 -1311 1196 848 306 264 121 89 chr15 63519823 63520171 -22175583 - HAL1 LINE L1 -2145 362 4 813 166 34 63 chr15 63520193 63520368 -22175386 + AluSg/x SINE Alu 137 306 -6 2085 100 4 4 chr15 63520994 63521302 -22174452 + AluSx SINE Alu 1 308 0 1609 175 10 33 chr15 63521320 63521623 -22174131 - AluJo SINE Alu -16 296 1 25 51 0 0 chr15 63521984 63522023 -22173731 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr15 63522177 63522207 -22173547 + AT_rich Low_complexity Low_complexity 1 30 0 2232 102 3 0 chr15 63522243 63522554 -22173200 + AluSx SINE Alu 1 312 0 229 265 60 12 chr15 63522639 63522722 -22173032 - L2 LINE L2 -1 3271 3185 1892 184 33 0 chr15 63522748 63523084 -22172670 - MER7A DNA MER2_type 0 346 2 604 268 128 48 chr15 63523164 63523623 -22172131 + MLT1H LTR MaLR 14 549 0 291 276 43 26 chr15 63524247 63524363 -22171391 + MIR SINE MIR 142 259 -3 1120 245 278 72 chr15 63524555 63525535 -22170219 + L2 LINE L2 1729 2909 -405 382 248 172 0 chr15 63525582 63525727 -22170027 + L2 LINE L2 3095 3264 -49 267 308 113 21 chr15 63526335 63526506 -22169248 - MER5B DNA MER1_type -2 176 2 279 252 49 32 chr15 63526619 63526742 -22169012 - L1ME4a LINE L1 -41 6080 5956 233 294 193 0 chr15 63526795 63526914 -22168840 - L1ME4a LINE L1 -297 5824 5683 270 286 101 8 chr15 63527052 63527171 -22168583 - L1ME4a LINE L1 -671 5450 5321 348 211 70 47 chr15 63527403 63527531 -22168223 + MIR SINE MIR 78 208 -54 207 0 0 0 chr15 63527715 63527738 -22168016 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2128 94 0 27 chr15 63527741 63528038 -22167716 + AluJb SINE Alu 1 289 -23 330 26 0 0 chr15 63528425 63528464 -22167290 + (CCCGG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr15 63528616 63528644 -22167110 + GC_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr15 63528791 63528822 -22166932 + GC_rich Low_complexity Low_complexity 1 31 0 303 158 0 18 chr15 63529203 63529260 -22166494 - MER5A DNA MER1_type -75 114 59 1942 105 61 4 chr15 63530277 63530554 -22165200 - AluSg SINE Alu -17 293 1 1263 103 6 0 chr15 63530612 63530787 -22164967 - AluY SINE Alu -21 290 115 1918 135 36 198 chr15 63530791 63531368 -22164386 - LTR12 LTR ERV1 -230 484 1 996 92 0 0 chr15 63531368 63531488 -22164266 - AluY SINE Alu -191 120 1 811 249 97 32 chr15 63531559 63531900 -22163854 - L1MC4 LINE L1 -472 7570 7208 266 242 187 0 chr15 63532280 63532351 -22163403 + L1ME LINE L1 566 659 -5975 306 0 0 0 chr15 63532351 63532385 -22163369 + (TG)n Simple_repeat Simple_repeat 2 35 0 266 242 187 0 chr15 63532385 63532404 -22163350 + L1ME LINE L1 659 673 -5961 945 187 83 70 chr15 63532405 63532435 -22163319 - MER31B LTR ERV1 0 485 457 2281 107 3 0 chr15 63532435 63532734 -22163020 + AluSx SINE Alu 9 308 -4 945 187 83 70 chr15 63532734 63533050 -22162704 - MER31B LTR ERV1 -28 457 1 2184 113 0 7 chr15 63533072 63533363 -22162391 + AluSq SINE Alu 1 289 -24 22 56 0 0 chr15 63533363 63533399 -22162355 + AT_rich Low_complexity Low_complexity 1 36 0 2319 117 0 0 chr15 63533402 63533710 -22162044 + AluSg SINE Alu 1 308 -2 1130 115 0 66 chr15 63534410 63534640 -22161114 + AluSg/x SINE Alu 138 310 0 365 289 26 78 chr15 63534644 63534855 -22160899 + L1ME LINE L1 1308 1453 -5089 1850 183 0 0 chr15 63534855 63535156 -22160598 + AluJb SINE Alu 1 301 -11 365 289 26 78 chr15 63535156 63535323 -22160431 + L1ME LINE L1 1453 1627 -4915 1808 184 89 72 chr15 63535332 63535635 -22160119 - MST-int LTR MaLR -724 927 612 2149 131 3 10 chr15 63535635 63535947 -22159807 - AluSg SINE Alu 0 310 1 1808 184 89 72 chr15 63535947 63536128 -22159626 - MST-int LTR MaLR -1039 612 435 438 175 0 12 chr15 63536269 63536349 -22159405 - AluS SINE Alu -233 80 2 * 769 189 23 0 chr15 63536349 63536475 -22159279 + AluJb SINE Alu 171 299 -13 265 183 17 0 chr15 63536477 63536537 -22159217 - HsTC2 DNA Tc2 -1835 63 3 21 36 0 0 chr15 63536724 63536752 -22159002 + AT_rich Low_complexity Low_complexity 1 28 0 2588 231 102 35 chr15 63536819 63537906 -22157848 + L1ME3A LINE L1 5004 6170 0 2521 64 3 0 chr15 63538082 63538378 -22157376 - AluSp SINE Alu -16 297 1 2379 98 0 0 chr15 63539094 63539400 -22156354 + AluY SINE Alu 1 306 -5 751 236 82 17 chr15 63539906 63540139 -22155615 - L1MC5 LINE L1 -1091 6870 6623 2228 101 0 3 chr15 63540259 63540545 -22155209 - AluSc SINE Alu -24 285 1 1764 267 21 29 chr15 63540680 63541039 -22154715 - MER45C DNA AcHobo -481 472 116 2218 117 7 0 chr15 63541039 63541338 -22154416 + AluSx SINE Alu 1 301 -11 1764 267 21 29 chr15 63541338 63541454 -22154300 - MER45C DNA AcHobo -837 116 1 1284 179 43 0 chr15 63541475 63541709 -22154045 + Charlie1b DNA MER1_type 6 249 -274 2404 108 0 6 chr15 63541721 63542035 -22153719 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 63542052 63542073 -22153681 + (TG)n Simple_repeat Simple_repeat 2 22 0 1307 188 55 17 chr15 63542073 63542270 -22153484 - L1M4 LINE L1 -1897 4249 4036 2187 122 3 3 chr15 63542270 63542573 -22153181 + AluSp SINE Alu 1 303 -10 1307 188 55 17 chr15 63542573 63542667 -22153087 - L1M4 LINE L1 -2110 4036 3947 259 189 75 0 chr15 63542674 63542727 -22153027 + Charlie1b DNA MER1_type 465 521 -2 606 294 52 36 chr15 63542732 63542984 -22152770 + MIR SINE MIR 7 262 0 2272 115 3 0 chr15 63543743 63544047 -22151707 - AluSp SINE Alu -8 305 1 399 330 97 22 chr15 63544224 63544718 -22151036 + L2 LINE L2 1812 2342 -972 279 0 0 0 chr15 63545069 63545100 -22150654 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2231 95 3 0 chr15 63545104 63545388 -22150366 - AluSq SINE Alu -28 285 1 254 200 0 88 chr15 63545388 63545468 -22150286 + MIR SINE MIR 92 164 -98 2268 92 28 0 chr15 63545851 63546135 -22149619 + AluSc SINE Alu 1 292 -17 490 262 104 40 chr15 63546226 63546687 -22149067 + MLT1L LTR MaLR 24 593 -22 240 302 79 24 chr15 63546793 63546919 -22148835 + MLT1L LTR MaLR 23 155 -460 190 354 108 19 chr15 63546978 63547238 -22148516 + L2 LINE L2 2457 2739 -575 2221 80 0 71 chr15 63547251 63547382 -22148372 + AluSq SINE Alu 5 144 -169 2079 106 25 0 chr15 63547382 63547680 -22148074 + AluSg SINE Alu 1 305 0 2221 80 0 71 chr15 63547680 63547871 -22147883 + AluSq SINE Alu 144 305 -8 648 257 36 65 chr15 63548063 63548355 -22147399 + MER39 LTR ERV1 1 509 -198 247 89 156 0 chr15 63548373 63548418 -22147336 - U2 snRNA snRNA -135 53 2 252 291 23 12 chr15 63548494 63548580 -22147174 + L1MC/D LINE L1 5643 5729 -2079 2658 58 0 6 chr15 63548629 63548942 -22146812 - AluY SINE Alu 0 311 1 506 167 0 0 chr15 63549001 63549079 -22146675 - AluS SINE Alu -233 79 2 1511 147 31 25 chr15 63549123 63549503 -22146251 + MSTB1 LTR MaLR 1 432 0 3170 197 16 0 chr15 63549503 63550113 -22145641 + MSTB1-int LTR MaLR 1 620 -1031 2285 89 9 25 chr15 63550115 63550430 -22145324 + AluSg SINE Alu 1 310 0 252 161 107 0 chr15 63550438 63550494 -22145260 + MSTB1-int LTR MaLR 603 664 -987 2173 91 0 7 chr15 63550608 63550883 -22144871 - AluSx SINE Alu -39 273 1 216 86 0 0 chr15 63551296 63551331 -22144423 + (T)n Simple_repeat Simple_repeat 1 35 0 2185 111 7 13 chr15 63552261 63552568 -22143186 - AluSq SINE Alu -8 305 1 21 82 0 0 chr15 63552686 63552735 -22143019 + AT_rich Low_complexity Low_complexity 1 49 0 567 281 21 36 chr15 63552863 63553055 -22142699 - L2 LINE L2 0 3313 3125 788 166 0 7 chr15 63553119 63553258 -22142496 + MLT1A1 LTR MaLR 1 138 -227 936 207 135 87 chr15 63553258 63553549 -22142205 - MLT1A1 LTR MaLR 0 365 55 2210 119 7 3 chr15 63553549 63553851 -22141903 - AluSx SINE Alu -9 303 1 936 207 135 87 chr15 63553851 63553893 -22141861 - MLT1A1 LTR MaLR -310 55 16 1299 189 18 9 chr15 63553900 63554128 -22141626 + MLT1A1 LTR MaLR 136 365 0 982 176 209 0 chr15 63554140 63554470 -22141284 - L2 LINE L2 -2442 872 474 251 241 0 0 chr15 63554534 63554592 -22141162 - L2 LINE L2 -196 3076 3019 424 293 63 23 chr15 63555382 63555556 -22140198 + MIR SINE MIR 67 247 -15 2237 113 0 3 chr15 63556751 63557053 -22138701 - AluSx SINE Alu -11 301 1 324 325 32 16 chr15 63558253 63558376 -22137378 + HAL1 LINE L1 9 133 -2374 2112 96 29 4 chr15 63558961 63559241 -22136513 - AluSx SINE Alu -22 290 4 653 193 0 0 chr15 63559298 63559412 -22136342 + FLAM_A SINE Alu 24 137 -5 1812 184 51 69 chr15 63559428 63559934 -22135820 + MLT1D LTR MaLR 2 498 -7 356 313 161 17 chr15 63559934 63560225 -22135529 + HAL1 LINE L1 1593 1925 -582 283 227 27 0 chr15 63560501 63560576 -22135178 + HAL1 LINE L1 2069 2145 -362 320 233 128 53 chr15 63561260 63561393 -22134361 - MER91B DNA MER1_type -22 168 26 284 240 173 53 chr15 63561591 63561741 -22134013 - L2 LINE L2 -1015 2299 2132 2269 89 0 0 chr15 63563157 63563449 -22132305 + AluSc SINE Alu 1 292 -17 205 382 36 0 chr15 63563862 63563972 -22131782 + L2 LINE L2 3200 3313 0 560 254 43 82 chr15 63564291 63564570 -22131184 - L1ME4a LINE L1 -261 5860 5593 907 173 139 0 chr15 63564596 63564694 -22131060 - AluJo SINE Alu -81 231 148 248 0 31 0 chr15 63564694 63564726 -22131028 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 907 173 139 0 chr15 63564726 63564829 -22130925 - AluJo SINE Alu -164 148 2 545 154 45 9 chr15 63564984 63565094 -22130660 - L1MB4 LINE L1 -23 6157 6044 27 49 0 0 chr15 63565098 63565139 -22130615 + AT_rich Low_complexity Low_complexity 1 41 0 1266 151 53 0 chr15 63565145 63565351 -22130403 - AluJo SINE Alu -91 221 5 3217 134 59 20 chr15 63565516 63565858 -22129896 - L1MB4 LINE L1 0 6180 5802 2176 88 24 0 chr15 63565858 63566029 -22129725 - AluY SINE Alu -9 302 120 441 0 0 0 chr15 63566029 63566078 -22129676 + (TG)n Simple_repeat Simple_repeat 2 50 0 2176 88 24 0 chr15 63566078 63566201 -22129553 - AluY SINE Alu -191 120 1 3217 134 59 20 chr15 63566201 63566468 -22129286 - L1MB4 LINE L1 -378 5802 5547 3753 167 33 11 chr15 63567459 63568182 -22127572 + L1MB7 LINE L1 5446 6184 0 1996 102 17 10 chr15 63568213 63568508 -22127246 - AluSq SINE Alu -16 297 1 353 161 0 0 chr15 63568509 63568565 -22127189 - MER53 DNA DNA -133 56 1 303 97 0 161 chr15 63568565 63568610 -22127144 + MER58A DNA MER1_type 45 79 -28 297 247 43 32 chr15 63569215 63569308 -22126446 - MIR SINE MIR -50 212 119 1924 115 0 4 chr15 63569525 63569804 -22125950 - AluSc SINE Alu -31 278 1 893 229 189 25 chr15 63569848 63570214 -22125540 - HAL1 LINE L1 -481 2026 1601 970 296 70 40 chr15 63570246 63570300 -22125454 + L1MEd LINE L1 29 80 -6039 2407 70 0 0 chr15 63570300 63570600 -22125154 + AluY SINE Alu 1 300 -11 970 296 70 40 chr15 63570600 63571042 -22124712 + L1MEd LINE L1 80 540 -5579 484 316 75 0 chr15 63571144 63571318 -22124436 + MER5A DNA MER1_type 2 188 -1 348 281 178 28 chr15 63571484 63571734 -22124020 + L1ME3A LINE L1 5602 5825 -345 25 65 0 0 chr15 63571741 63571787 -22123967 + AT_rich Low_complexity Low_complexity 1 46 0 335 208 52 10 chr15 63571916 63572012 -22123742 - HAL1b LINE L1 -496 852 753 285 104 0 0 chr15 63572117 63572165 -22123589 + U7 snRNA snRNA 1 48 -15 369 340 93 29 chr15 63572342 63572727 -22123027 - HAL1 LINE L1 -711 1796 1387 614 232 32 77 chr15 63572728 63572974 -22122780 - L2 LINE L2 -1 3312 3078 1889 153 0 3 chr15 63572984 63573278 -22122476 - AluJb SINE Alu -14 298 6 576 288 50 76 chr15 63573309 63573864 -22121890 - HAL1 LINE L1 -1156 1351 811 1094 177 49 0 chr15 63574157 63574360 -22121394 + AluJo SINE Alu 85 297 -15 368 97 88 23 chr15 63574630 63574717 -22121037 - MLT1G1 LTR MaLR 0 593 452 682 282 23 25 chr15 63574749 63574962 -22120792 - MLT1G1 LTR MaLR -210 385 155 774 171 0 0 chr15 63575175 63575298 -22120456 + FLAM_A SINE Alu 10 132 -10 228 295 11 27 chr15 63576192 63576310 -22119444 + CT-rich Low_complexity Low_complexity 1 180 0 220 313 0 16 chr15 63576310 63576374 -22119380 - L2 LINE L2 -10 3262 3200 1994 123 0 17 chr15 63577176 63577478 -22118276 - AluSx SINE Alu -15 297 1 334 342 92 0 chr15 63577678 63577830 -22117924 + MIR SINE MIR 30 195 -67 190 332 104 21 chr15 63578205 63578398 -22117356 + L2 LINE L2 2152 2360 -954 551 326 74 44 chr15 63578408 63578660 -22117094 + L2 LINE L2 2488 2731 -541 1545 151 30 33 chr15 63578660 63578931 -22116823 - AluJb SINE Alu -12 300 31 551 326 74 44 chr15 63578931 63579441 -22116313 + L2 LINE L2 2731 3272 0 1508 145 35 0 chr15 63579532 63579814 -22115940 + MER33 DNA MER1_type 1 292 -32 1972 117 3 3 chr15 63579814 63580105 -22115649 + AluSx SINE Alu 1 291 -21 2392 61 0 0 chr15 63580521 63580832 -22114922 + AluYa5 SINE Alu 1 311 0 208 257 162 14 chr15 63581256 63581330 -22114424 + MIR3 SINE MIR 86 170 -38 1411 158 82 4 chr15 63581331 63581610 -22114144 + AluJb SINE Alu 1 301 -11 2054 45 56 4 chr15 63581612 63581931 -22113823 + AluY SINE Alu 1 333 0 647 214 107 0 chr15 63582330 63582489 -22113265 - MIR SINE MIR -52 210 35 22 56 0 0 chr15 63583171 63583207 -22112547 + GC_rich Low_complexity Low_complexity 1 36 0 267 241 48 12 chr15 63583619 63583702 -22112052 + MIR3 SINE MIR 7 92 -116 521 252 193 33 chr15 63584390 63584813 -22110941 - L2 LINE L2 -9 3304 2406 1985 109 0 3 chr15 63586273 63586558 -22109196 - AluSx SINE Alu -24 288 5 845 106 50 6 chr15 63586792 63587114 -22108640 + (TCCA)n Simple_repeat Simple_repeat 1 336 0 255 253 99 0 chr15 63587430 63587521 -22108233 + L2 LINE L2 3203 3302 -11 289 254 60 0 chr15 63587563 63587630 -22108124 - MIR SINE MIR -100 108 38 183 310 56 49 chr15 63588783 63588925 -22106829 + MIR SINE MIR 29 171 -91 257 152 114 76 chr15 63589186 63589265 -22106489 - MLT1F1 LTR MaLR -13 554 473 246 287 45 57 chr15 63589326 63589483 -22106271 - MLT1F1 LTR MaLR -270 279 125 263 322 52 17 chr15 63589541 63589656 -22106098 - MIR3 SINE MIR -29 179 61 2214 102 0 0 chr15 63590723 63591018 -22104736 - AluSx SINE Alu -17 295 1 340 295 11 11 chr15 63592015 63592110 -22103644 - MIR3 SINE MIR -50 158 64 323 272 80 86 chr15 63592539 63592840 -22102914 - L2 LINE L2 -63 3209 2911 270 300 130 17 chr15 63592892 63593185 -22102569 - L2 LINE L2 -1001 2313 1988 262 352 131 16 chr15 63593362 63593683 -22102071 - L2 LINE L2 -568 2746 2389 753 187 22 0 chr15 63593685 63593824 -22101930 + FRAM SINE Alu 5 146 -30 330 26 0 0 chr15 63593831 63593870 -22101884 + (CA)n Simple_repeat Simple_repeat 2 40 0 428 245 38 32 chr15 63594509 63594692 -22101062 + MIR SINE MIR 41 225 -37 1588 107 121 32 chr15 63596185 63596466 -22099288 - AluSx SINE Alu -6 306 1 2116 104 0 36 chr15 63596673 63596982 -22098772 - AluSx SINE Alu -14 298 1 276 167 0 0 chr15 63597986 63598058 -22097696 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 636 132 0 0 chr15 63598072 63598163 -22097591 - FRAM SINE Alu -24 152 62 671 244 97 37 chr15 63599472 63599847 -22095907 + L1ME4a LINE L1 5513 5935 -186 188 135 27 0 chr15 63599872 63599909 -22095845 + (TATG)n Simple_repeat Simple_repeat 3 40 0 490 273 9 18 chr15 63600036 63600146 -22095608 - MIR3 SINE MIR -23 185 77 617 235 149 18 chr15 63600960 63601181 -22094573 + MIR SINE MIR 13 262 0 2229 89 0 16 chr15 63602510 63602825 -22092929 + AluSg SINE Alu 1 310 0 419 223 74 50 chr15 63603238 63603359 -22092395 - MIR SINE MIR -71 191 68 212 366 12 0 chr15 63603516 63603598 -22092156 + L2 LINE L2 3179 3261 -11 709 295 148 28 chr15 63604056 63604430 -22091324 + L2 LINE L2 2081 2523 -791 1611 191 3 10 chr15 63604430 63604729 -22091025 - AluJo SINE Alu -15 297 1 709 295 148 28 chr15 63604729 63604819 -22090935 + L2 LINE L2 2523 2601 -713 255 187 127 18 chr15 63604870 63604964 -22090790 - MLT1I LTR MaLR -10 428 315 433 301 37 7 chr15 63605097 63605233 -22090521 - MIR SINE MIR -117 145 6 1717 150 3 38 chr15 63606413 63606726 -22089028 + AluSx SINE Alu 6 307 -5 2048 110 7 7 chr15 63606948 63607249 -22088505 + AluSx SINE Alu 1 301 -11 993 232 54 9 chr15 63607570 63607794 -22087960 + MIR SINE MIR 2 235 -27 212 224 61 0 chr15 63607764 63607813 -22087941 + L2 LINE L2 3210 3261 -11 * 931 107 0 30 chr15 63608162 63608293 -22087461 - FLAM_C SINE Alu -6 127 1 416 286 303 0 chr15 63608628 63608803 -22086951 - MIR SINE MIR -33 229 2 2245 84 0 7 chr15 63609824 63610122 -22085632 - AluSx SINE Alu -16 296 1 24 0 0 0 chr15 63612926 63612950 -22082804 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr15 63613106 63613156 -22082598 + AT_rich Low_complexity Low_complexity 1 50 0 198 103 0 0 chr15 63613602 63613631 -22082123 + (A)n Simple_repeat Simple_repeat 1 29 0 2339 93 0 10 chr15 63616082 63616384 -22079370 - AluSg SINE Alu -11 299 1 553 210 166 0 chr15 63616989 63617194 -22078560 + Charlie1 DNA MER1_type 1773 2011 -750 861 194 7 0 chr15 63617194 63617349 -22078405 - FRAM SINE Alu -20 156 1 543 194 16 0 chr15 63617349 63617478 -22078276 + Charlie1 DNA MER1_type 1996 2126 -635 4643 122 25 10 chr15 63617501 63618271 -22077483 + L1PA14 LINE L1 5370 6150 -11 1175 167 108 17 chr15 63618272 63618625 -22077129 + Charlie1 DNA MER1_type 2327 2711 -50 1698 97 22 0 chr15 63618626 63618852 -22076902 - AluSx SINE Alu -20 292 62 1238 77 0 29 chr15 63618952 63619122 -22076632 + AluY SINE Alu 139 303 -8 2058 105 65 3 chr15 63619400 63619694 -22076060 - AluSx SINE Alu 0 312 1 1060 103 0 28 chr15 63619694 63619839 -22075915 - AluSq/x SINE Alu -171 141 1 360 236 79 0 chr15 63620318 63620407 -22075347 + MIR3 SINE MIR 91 186 -22 397 274 9 26 chr15 63620490 63620603 -22075151 - MIR3 SINE MIR -17 191 81 529 256 131 6 chr15 63621993 63622153 -22073601 + MER5A DNA MER1_type 9 188 -1 343 306 142 21 chr15 63622189 63622660 -22073094 + L2 LINE L2 1569 2096 -1218 498 283 100 11 chr15 63622856 63623030 -22072724 - MIR SINE MIR -29 233 50 27 62 0 0 chr15 63623030 63623078 -22072676 + AT_rich Low_complexity Low_complexity 1 48 0 1323 260 87 44 chr15 63623309 63623478 -22072276 - L1ME3 LINE L1 -282 5880 5720 2439 71 0 3 chr15 63623478 63623773 -22071981 - AluY SINE Alu -17 294 1 1323 260 87 44 chr15 63623773 63624558 -22071196 - L1ME3 LINE L1 -442 5720 4724 3234 241 61 142 chr15 63624604 63624753 -22071001 - L2 LINE L2 -1576 1738 1579 2160 128 3 0 chr15 63624753 63625050 -22070704 + AluSc SINE Alu 1 298 -11 3234 241 61 142 chr15 63625050 63625733 -22070021 - L2 LINE L2 -1735 1579 842 379 242 45 45 chr15 63625733 63625865 -22069889 - MER20B DNA MER1_type -604 179 48 3234 241 61 142 chr15 63625865 63625946 -22069808 - L2 LINE L2 -2472 842 756 2108 95 4 0 chr15 63625946 63626219 -22069535 + AluSx SINE Alu 36 309 -3 3234 241 61 142 chr15 63626219 63627062 -22068692 - L2 LINE L2 -2558 756 2 1604 234 51 70 chr15 63627225 63627815 -22067939 - MLT1E LTR MaLR 0 593 15 473 150 62 0 chr15 63627934 63628014 -22067740 + FRAM SINE Alu 8 92 -84 2163 63 0 76 chr15 63628524 63628840 -22066914 - AluY SINE Alu -19 292 1 1727 159 0 63 chr15 63629555 63629888 -22065866 + AluJb SINE Alu 1 312 0 639 209 93 16 chr15 63629953 63630082 -22065672 + MER5A DNA MER1_type 2 140 -49 239 290 16 0 chr15 63630287 63630349 -22065405 + MER5A DNA MER1_type 126 188 -1 1664 184 17 3 chr15 63630388 63630687 -22065067 - AluJo SINE Alu -9 303 1 612 295 118 50 chr15 63631495 63632029 -22063725 + L2 LINE L2 2697 3271 -1 246 184 61 0 chr15 63632082 63632131 -22063623 + Tigger3(Golem) DNA MER2_type 1 52 -2977 549 191 38 69 chr15 63632131 63632220 -22063534 + Tigger3(Golem) DNA MER2_type 2909 2994 -44 2272 97 0 13 chr15 63632220 63632519 -22063235 - AluY SINE Alu -16 295 1 549 191 38 69 chr15 63632519 63632560 -22063194 + Tigger3(Golem) DNA MER2_type 2994 3035 -3 303 215 15 0 chr15 63632630 63632695 -22063059 - 7SK RNA RNA -1 192 127 1084 210 99 4 chr15 63633997 63634240 -22061514 + Tigger7 DNA MER2_type 2 267 -466 656 110 10 10 chr15 63634237 63634337 -22061417 + Tigger7 DNA MER2_type 2392 2491 0 * 2172 125 10 0 chr15 63634366 63634663 -22061091 - AluSp SINE Alu -13 300 1 2369 257 83 36 chr15 63634904 63635714 -22060040 - L2 LINE L2 0 3313 2432 2244 113 0 0 chr15 63635714 63636007 -22059747 - AluSc SINE Alu -16 293 1 2369 257 83 36 chr15 63636007 63636261 -22059493 - L2 LINE L2 -881 2432 2191 1411 142 46 0 chr15 63636763 63636982 -22058772 - AluJb SINE Alu -83 229 1 389 308 8 17 chr15 63637643 63637763 -22057991 - L2 LINE L2 -1 3312 3194 496 255 12 39 chr15 63638441 63638633 -22057121 + MLT1J LTR MaLR 1 148 -302 306 67 67 0 chr15 63638633 63638678 -22057076 - MER6B DNA MER2_type 0 210 163 * 447 228 40 0 chr15 63638676 63638777 -22056977 - MER6B DNA MER2_type -171 105 1 340 286 43 14 chr15 63638900 63639040 -22056714 + MLT1J LTR MaLR 329 472 -39 255 79 0 0 chr15 63639891 63639929 -22055825 + (A)n Simple_repeat Simple_repeat 1 38 0 187 279 333 16 chr15 63640042 63640171 -22055583 + L2 LINE L2 2594 2763 -551 217 258 0 108 chr15 63640173 63640266 -22055488 - MER5B DNA MER1_type -10 168 86 353 190 11 0 chr15 63640671 63640751 -22055003 - MER69 DNA AcHobo -120 57 1 427 221 156 39 chr15 63640771 63640955 -22054799 + MIR SINE MIR 45 250 -12 1518 106 0 0 chr15 63641149 63641348 -22054406 + AluY SINE Alu 113 311 0 1923 129 9 0 chr15 63641348 63641680 -22054074 + L1PA15-16 LINE L1 2057 2391 -4458 307 268 282 9 chr15 63642688 63642908 -22052846 + L2 LINE L2 3019 3298 -15 11623 207 34 57 chr15 63643476 63643852 -22051902 + L1PA16 LINE L1 1722 2105 -4061 2095 132 78 34 chr15 63643852 63644262 -22051492 - MSTA LTR MaLR 0 428 1 11623 207 34 57 chr15 63644262 63644555 -22051199 + L1PA16 LINE L1 2105 2403 -3763 2061 125 0 13 chr15 63644555 63644860 -22050894 + AluSx SINE Alu 1 301 -11 11623 207 34 57 chr15 63644860 63646600 -22049154 + L1PA16 LINE L1 2403 4183 -1983 1129 0 0 0 chr15 63646600 63646726 -22049028 + AluY SINE Alu 186 311 0 11623 207 34 57 chr15 63646726 63646798 -22048956 + L1PA16 LINE L1 4183 4255 -1911 2190 104 7 0 chr15 63646798 63647096 -22048658 + AluSx SINE Alu 1 300 -12 11623 207 34 57 chr15 63647096 63648331 -22047423 + L1PA16 LINE L1 4255 5518 -648 1295 55 0 0 chr15 63648331 63648494 -22047260 - L1PA5 LINE L1 -3 6151 5989 4111 142 35 3 chr15 63648494 63649173 -22046581 + L1PA16 LINE L1 5453 6163 -3 11623 207 34 57 chr15 63649173 63649192 -22046562 + L1PA16 LINE L1 5476 5494 -672 742 238 229 21 chr15 63649346 63649626 -22046128 + MSTD LTR MaLR 1 360 -36 2070 128 101 32 chr15 63649626 63649836 -22045918 - Tigger2a DNA MER2_type -2274 434 240 2064 103 58 7 chr15 63649836 63650127 -22045627 + AluSx SINE Alu 3 308 -4 2070 128 101 32 chr15 63650127 63650322 -22045432 - Tigger2a DNA MER2_type -2468 240 1 742 238 229 21 chr15 63650322 63650369 -22045385 + MSTD LTR MaLR 360 396 0 370 374 40 29 chr15 63650376 63650419 -22045335 + L2 LINE L2 1990 2031 -1283 2179 153 8 8 chr15 63650419 63650785 -22044969 + MER47A DNA MER2_type 1 366 0 370 374 40 29 chr15 63650785 63651089 -22044665 + L2 LINE L2 2031 2341 -973 392 243 10 39 chr15 63651370 63651473 -22044281 + MIR3 SINE MIR 108 207 -1 185 366 68 58 chr15 63651518 63651709 -22044045 + L2 LINE L2 2457 2649 -665 621 131 19 0 chr15 63651815 63651922 -22043832 - L1MB2 LINE L1 -7 6164 6056 1330 229 8 79 chr15 63652144 63652511 -22043243 + MER102b DNA MER1_type 1 341 0 392 182 91 9 chr15 63652536 63652646 -22043108 + LTR37B LTR ERV1 350 468 0 2455 72 0 3 chr15 63652856 63653160 -22042594 + AluY SINE Alu 1 303 -8 257 77 0 0 chr15 63653177 63653216 -22042538 - LTR53 LTR ERVL -64 455 417 424 262 138 0 chr15 63653843 63653988 -22041766 + MER5A DNA MER1_type 7 171 -18 2030 109 0 4 chr15 63654218 63654485 -22041269 - AluSx SINE Alu -34 278 13 1137 159 53 10 chr15 63655749 63655957 -22039797 + AluJo SINE Alu 89 305 -7 2740 157 71 12 chr15 63656175 63656665 -22039089 + LTR53 LTR ERVL 1 519 0 705 313 130 7 chr15 63656854 63657161 -22038593 + L2 LINE L2 2967 3311 -2 2101 130 31 0 chr15 63657922 63658215 -22037539 - AluSx SINE Alu -9 303 2 26 30 0 0 chr15 63658418 63658451 -22037303 + AT_rich Low_complexity Low_complexity 1 33 0 2270 107 0 0 chr15 63658764 63659055 -22036699 - AluSx SINE Alu -21 291 1 400 282 18 41 chr15 63659222 63659392 -22036362 - L1ME2 LINE L1 -10 6154 5989 288 186 17 0 chr15 63659414 63659473 -22036281 - L1ME LINE L1 -678 5488 5429 1493 194 127 3 chr15 63659599 63660032 -22035722 + L1ME2 LINE L1 5639 6154 -8 276 227 53 116 chr15 63660066 63660291 -22035463 + L1MC4 LINE L1 7829 8039 -3 488 91 0 0 chr15 63660474 63660540 -22035214 + L1PA15 LINE L1 6030 6095 -70 1913 116 46 36 chr15 63660756 63661059 -22034695 + AluSx SINE Alu 1 306 -6 952 316 72 31 chr15 63862008 63862552 -21833202 + ERVL LTR ERVL 3032 3597 -2167 721 344 44 6 chr15 63862561 63862922 -21832832 + ERVL LTR ERVL 4368 4742 -1022 345 285 114 10 chr15 63863029 63863362 -21832392 + ERVL LTR ERVL 4884 5273 -491 321 242 0 50 chr15 63863984 63864083 -21831671 + LTR67 LTR ERVL 457 550 -7 270 233 17 0 chr15 63864127 63864187 -21831567 + L2 LINE L2 3209 3269 -3 785 140 0 52 chr15 63866622 63866758 -21828996 - FLAM_C SINE Alu -4 129 1 526 263 132 28 chr15 63868064 63868277 -21827477 + MIR SINE MIR 28 262 0 296 258 50 58 chr15 63868368 63868488 -21827266 - MIR SINE MIR -56 206 88 1830 134 62 0 chr15 63868556 63868846 -21826908 - AluSx SINE Alu -4 308 1 181 313 78 0 chr15 63872039 63872103 -21823651 + L2 LINE L2 3186 3254 -59 815 206 68 106 chr15 63872330 63873485 -21822269 + L1MC5 LINE L1 6661 7684 -277 1735 121 4 0 chr15 63873534 63873790 -21821964 + AluSx SINE Alu 34 290 -22 227 204 0 0 chr15 63873799 63873848 -21821906 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 410 258 62 51 chr15 63873970 63874148 -21821606 - MER5A DNA MER1_type -9 180 1 599 250 88 5 chr15 63874882 63875074 -21820680 + MIR SINE MIR 16 223 -39 276 262 97 19 chr15 63875678 63875781 -21819973 - MIR SINE MIR -20 242 132 563 313 70 13 chr15 63878720 63878947 -21816807 - MIR SINE MIR -18 244 5 286 287 8 25 chr15 63879660 63879782 -21815972 + HAL1b LINE L1 710 829 -519 3300 132 6 25 chr15 63880110 63880627 -21815127 + MER1A DNA MER1_type 23 529 0 463 287 110 10 chr15 63880627 63881010 -21814744 + L1M4 LINE L1 4972 5392 -754 1659 162 40 7 chr15 63881424 63881726 -21814028 - AluSx SINE Alu 0 312 1 28 29 0 0 chr15 63882093 63882128 -21813626 + AT_rich Low_complexity Low_complexity 1 35 0 471 246 82 0 chr15 63882382 63882492 -21813262 + L1MDa LINE L1 21 139 -6401 267 31 0 0 chr15 63884212 63884244 -21811510 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr15 63884508 63884538 -21811216 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr15 63884705 63884753 -21811001 + AT_rich Low_complexity Low_complexity 1 48 0 5538 55 3 0 chr15 63884940 63885618 -21810136 + L1PA7 LINE L1 5462 6141 -13 324 328 38 76 chr15 63885752 63885990 -21809764 + L1ME3A LINE L1 5923 6151 -19 21 0 0 0 chr15 63887110 63887131 -21808623 + AT_rich Low_complexity Low_complexity 1 21 0 573 288 47 30 chr15 63887196 63887429 -21808325 - L3b LINE CR1 -116 1467 1231 1775 93 7 15 chr15 63887632 63887902 -21807852 - AluY SINE Alu 0 311 44 438 290 39 66 chr15 63888544 63888803 -21806951 + LTR16A1 LTR ERVL 204 455 -2 275 232 43 22 chr15 63889302 63889440 -21806314 - L1M4 LINE L1 -2125 4723 4583 1941 167 93 0 chr15 63889645 63889998 -21805756 + MLT1B LTR MaLR 3 388 -2 377 274 94 106 chr15 63890175 63890609 -21805145 - L1M4 LINE L1 -2647 4201 3733 305 186 167 29 chr15 63890787 63890889 -21804865 - L1M4 LINE L1 -4920 1929 1814 414 143 0 0 chr15 63890991 63891054 -21804700 - MSTA LTR MaLR -365 63 1 295 335 66 31 chr15 63891190 63891477 -21804277 + L1MDa LINE L1 394 690 -6031 368 287 56 60 chr15 63891740 63891956 -21803798 + L1ME1 LINE L1 5925 6139 -27 264 59 0 0 chr15 63892329 63892363 -21803391 + (CA)n Simple_repeat Simple_repeat 1 34 0 333 278 80 83 chr15 63892518 63892961 -21802793 + L1M4 LINE L1 875 3261 -1314 241 250 227 0 chr15 63893369 63893457 -21802297 + MIR SINE MIR 7 114 -148 22 0 0 0 chr15 63893461 63893483 -21802271 + AT_rich Low_complexity Low_complexity 1 22 0 803 149 7 58 chr15 63893491 63893645 -21802109 - FRAM SINE Alu -31 145 1 261 269 74 101 chr15 63893664 63893756 -21801998 + MIR SINE MIR 118 207 -55 1635 181 0 7 chr15 63893756 63894075 -21801679 + AluJb SINE Alu 1 317 0 261 269 74 101 chr15 63894075 63894130 -21801624 + MIR SINE MIR 207 262 0 1657 108 50 19 chr15 63894283 63894418 -21801336 - AluSp SINE Alu -47 266 137 238 31 31 0 chr15 63894418 63894450 -21801304 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1657 108 50 19 chr15 63894450 63894572 -21801182 - AluSp SINE Alu -176 137 1 1832 125 0 4 chr15 63895598 63895862 -21799892 - AluSx SINE Alu -48 264 2 429 285 151 29 chr15 63895956 63896128 -21799626 + MIR SINE MIR 5 197 -65 1901 154 3 0 chr15 63896128 63896427 -21799327 + AluJb SINE Alu 3 302 -10 765 213 0 25 chr15 63896460 63896620 -21799134 + FRAM SINE Alu 1 155 -21 2099 116 0 29 chr15 63896628 63896939 -21798815 + AluSg SINE Alu 4 305 -5 257 130 65 0 chr15 63896948 63896994 -21798760 + MIR SINE MIR 213 261 -1 247 352 9 19 chr15 63897018 63897126 -21798628 + L2 LINE L2 2986 3092 -180 1900 167 0 0 chr15 63897132 63897444 -21798310 - AluJo SINE Alu 0 312 1 2141 81 17 7 chr15 63897463 63897758 -21797996 - AluSq SINE Alu -15 298 1 2350 76 0 3 chr15 63897782 63898085 -21797669 - AluSx SINE Alu -10 302 1 2308 62 3 0 chr15 63898093 63898382 -21797372 - AluY SINE Alu -21 290 1 270 325 106 94 chr15 63898658 63899064 -21796690 + L2 LINE L2 2846 3256 -16 853 129 7 21 chr15 63899080 63899220 -21796534 + AluJo SINE Alu 1 138 -174 352 123 0 0 chr15 63899224 63899281 -21796473 + Alu SINE Alu 245 301 -1 1904 104 57 4 chr15 63899358 63899638 -21796116 - AluSc SINE Alu -14 295 1 180 0 0 0 chr15 63899679 63899699 -21796055 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1998 96 0 7 chr15 63899702 63899983 -21795771 - AluSc SINE Alu -30 279 1 1865 146 3 0 chr15 63900011 63900305 -21795449 + AluJb SINE Alu 1 295 -17 2046 119 10 0 chr15 63900308 63900611 -21795143 + AluSx SINE Alu 1 306 -6 227 208 0 21 chr15 63900734 63900782 -21794972 + GA-rich Low_complexity Low_complexity 2 48 0 722 196 6 15 chr15 63900793 63900964 -21794790 + MER33 DNA MER1_type 1 144 -78 845 153 25 37 chr15 63900997 63901160 -21794594 - FRAM SINE Alu -14 162 2 1523 157 72 142 chr15 63901160 63901240 -21794514 - MLT2A2 LTR ERVL 0 554 470 2006 138 3 0 chr15 63901240 63901537 -21794217 + AluSq SINE Alu 1 298 -15 1523 157 72 142 chr15 63901537 63901845 -21793909 - MLT2A2 LTR ERVL -84 470 204 1971 122 7 3 chr15 63901845 63902139 -21793615 - AluSg SINE Alu -15 295 1 1523 157 72 142 chr15 63902139 63902330 -21793424 - MLT2A2 LTR ERVL -350 204 1 693 202 0 0 chr15 63902339 63902458 -21793296 - FLAM_C SINE Alu -13 120 2 1313 205 7 44 chr15 63902609 63902906 -21792848 - L1PA16 LINE L1 -15 6151 5866 1026 165 11 16 chr15 63902906 63903088 -21792666 - AluJo SINE Alu -131 181 1 1371 114 13 0 chr15 63903088 63903396 -21792358 - L1P5 LINE L1 -680 5476 5166 650 181 163 31 chr15 63903445 63903605 -21792149 - FRAM SINE Alu 0 176 1 1518 170 65 4 chr15 63903614 63903891 -21791863 - AluJb SINE Alu -18 294 1 212 0 0 35 chr15 63903896 63903925 -21791829 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1825 106 73 0 chr15 63903925 63904198 -21791556 - AluSp SINE Alu -20 293 1 1972 131 3 3 chr15 63904200 63904497 -21791257 - AluSx SINE Alu -15 297 1 2493 61 0 0 chr15 63904927 63905237 -21790517 - AluY SINE Alu -1 310 1 1158 130 6 0 chr15 63905602 63905779 -21789975 - AluSq SINE Alu -7 306 129 1770 138 0 37 chr15 63905801 63906097 -21789657 - AluSq SINE Alu -28 285 1 1804 153 0 13 chr15 63906174 63906474 -21789280 + AluJo SINE Alu 1 296 -16 2010 133 0 7 chr15 63906476 63906785 -21788969 + AluSx SINE Alu 1 307 -5 693 208 0 0 chr15 63906990 63907110 -21788644 + MIR SINE MIR 32 151 -111 368 103 0 0 chr15 63907184 63907242 -21788512 - Alu SINE Alu -2 300 243 842 143 21 0 chr15 63907242 63907253 -21788501 - AluSq/x SINE Alu -169 143 134 216 0 0 0 chr15 63907253 63907277 -21788477 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 842 143 21 0 chr15 63907277 63907405 -21788349 - AluSq/x SINE Alu -178 134 1 964 70 13 19 chr15 63907472 63907630 -21788124 + (GAA)n Simple_repeat Simple_repeat 3 159 0 2034 115 3 7 chr15 63907885 63908181 -21787573 - AluSx SINE Alu -17 295 1 1780 156 24 0 chr15 63908186 63908481 -21787273 - AluJb SINE Alu -10 302 1 391 278 191 0 chr15 63909062 63909224 -21786530 - MIR SINE MIR -69 193 1 292 219 14 55 chr15 63909251 63909324 -21786430 + L2 LINE L2 3244 3313 0 2162 111 10 0 chr15 63909369 63909667 -21786087 + AluSc SINE Alu 1 301 -8 237 57 0 0 chr15 63909787 63909822 -21785932 - AluJb SINE Alu -2 300 266 1068 158 60 51 chr15 63909824 63910039 -21785715 - AluJb SINE Alu -95 217 1 1767 159 0 0 chr15 63910189 63910493 -21785261 + AluSx SINE Alu 6 309 0 24 77 0 0 chr15 63910493 63910545 -21785209 + AT_rich Low_complexity Low_complexity 1 52 0 426 319 36 0 chr15 63910750 63910888 -21784866 - L2 LINE L2 -5 3267 3125 834 269 8 5 chr15 63911145 63911413 -21784341 + L1ME LINE L1 5293 5558 -612 225 291 25 65 chr15 63911449 63911559 -21784195 + L1ME LINE L1 5561 5661 -509 2682 23 0 0 chr15 63911559 63911865 -21783889 + AluY SINE Alu 1 306 -5 225 291 25 65 chr15 63911865 63911953 -21783801 + L1ME LINE L1 5661 5751 -419 663 265 158 45 chr15 63911969 63912324 -21783430 - LTR16C LTR ERVL 0 491 97 300 137 0 0 chr15 63912662 63912713 -21783041 + (TG)n Simple_repeat Simple_repeat 2 52 0 646 213 0 31 chr15 63912842 63912969 -21782785 - FLAM_A SINE Alu -7 126 4 1969 113 35 0 chr15 63912976 63913260 -21782494 - AluSx SINE Alu -13 299 6 34 34 0 17 chr15 63913275 63913290 -21782464 + AT_rich Low_complexity Low_complexity 1 15 -43 2130 102 3 16 chr15 63913290 63913604 -21782150 - AluSp SINE Alu -3 310 1 34 34 0 17 chr15 63913604 63913647 -21782107 + AT_rich Low_complexity Low_complexity 15 58 0 1521 142 3 123 chr15 63913647 63913971 -21781783 + AluJo SINE Alu 2 286 -16 234 0 0 0 chr15 63913980 63914006 -21781748 + (CA)n Simple_repeat Simple_repeat 2 27 0 956 163 118 0 chr15 63914093 63914180 -21781574 - AluJo SINE Alu -85 227 152 212 0 36 0 chr15 63914180 63914208 -21781546 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 956 163 118 0 chr15 63914208 63914323 -21781431 - AluJo SINE Alu -160 152 1 357 213 25 0 chr15 63914334 63914414 -21781340 + L2 LINE L2 3229 3310 -3 498 309 35 10 chr15 63914747 63914948 -21780806 + LTR33 LTR ERVL 3 208 -313 818 246 15 5 chr15 63914976 63915179 -21780575 + LTR33 LTR ERVL 317 521 0 286 190 101 25 chr15 63915191 63915270 -21780484 - L1MB7 LINE L1 -4 6180 6096 2115 104 3 25 chr15 63915453 63915769 -21779985 - AluSx SINE Alu -3 309 1 268 202 60 107 chr15 63916087 63916171 -21779583 + L2 LINE L2 3234 3313 0 851 153 86 55 chr15 63916720 63916883 -21778871 + AluJb SINE Alu 135 302 -10 832 139 14 14 chr15 63917355 63917499 -21778255 - BC200 scRNA scRNA -55 145 2 739 256 47 14 chr15 63918052 63918192 -21777562 - MER112 DNA MER1_type -27 233 82 333 0 0 0 chr15 63918192 63918229 -21777525 + (TG)n Simple_repeat Simple_repeat 1 37 0 739 256 47 14 chr15 63918229 63918303 -21777451 - MER112 DNA MER1_type -178 82 12 255 313 37 43 chr15 63918711 63918874 -21776880 + L2 LINE L2 2817 2978 -294 1873 123 46 0 chr15 63918951 63919236 -21776518 - AluSx SINE Alu -14 298 1 22 0 0 0 chr15 63919566 63919588 -21776166 + AT_rich Low_complexity Low_complexity 1 22 0 1954 140 0 9 chr15 63920125 63920262 -21775492 + AluSq SINE Alu 1 138 -175 2307 90 3 0 chr15 63920262 63920574 -21775180 + AluSq SINE Alu 1 313 0 1954 140 0 9 chr15 63920574 63920751 -21775003 + AluSq SINE Alu 138 312 -1 465 219 0 19 chr15 63920756 63920861 -21774893 - FLAM_A SINE Alu -6 136 34 22 0 0 0 chr15 63921744 63921766 -21773988 + GC_rich Low_complexity Low_complexity 1 22 0 249 139 0 0 chr15 63921794 63921837 -21773917 + (CCCCG)n Simple_repeat Simple_repeat 1 43 0 180 111 0 0 chr15 63921835 63921862 -21773892 + (CCG)n Simple_repeat Simple_repeat 1 27 0 * 215 281 8 16 chr15 63922104 63922225 -21773529 + C-rich Low_complexity Low_complexity 5 124 0 * 259 266 8 31 chr15 63922173 63922301 -21773453 + (CCG)n Simple_repeat Simple_repeat 2 126 0 240 180 20 60 chr15 63922317 63922417 -21773337 + (CCGGG)n Simple_repeat Simple_repeat 2 97 0 218 211 23 47 chr15 63922437 63922565 -21773189 + (CCG)n Simple_repeat Simple_repeat 3 127 0 493 220 0 0 chr15 63923519 63923610 -21772144 - L2 LINE L2 -1 3271 3181 2163 95 0 3 chr15 63923658 63923953 -21771801 + AluSx SINE Alu 1 294 -18 506 278 80 77 chr15 63923964 63924651 -21771103 - L2 LINE L2 0 3313 2665 445 312 73 39 chr15 63924790 63925024 -21770730 - MIR SINE MIR 0 262 21 * 594 257 77 16 chr15 63925005 63925188 -21770566 + MIR SINE MIR 18 211 -51 38 22 0 0 chr15 63925207 63925252 -21770502 + AT_rich Low_complexity Low_complexity 1 45 0 2101 132 0 0 chr15 63925261 63925572 -21770182 + AluSx SINE Alu 1 311 -1 752 145 8 0 chr15 63925582 63925699 -21770055 - FLAM_C SINE Alu -15 118 1 370 304 77 25 chr15 63926067 63926307 -21769447 - L2 LINE L2 -226 3046 2736 2160 112 0 0 chr15 63927107 63927411 -21768343 - AluSx SINE Alu -8 304 1 1806 142 0 14 chr15 63927915 63928204 -21767550 + AluSq SINE Alu 1 285 -28 1153 130 6 0 chr15 63928226 63928403 -21767351 + AluSq SINE Alu 129 306 -7 2237 91 0 28 chr15 63928768 63929086 -21766668 + AluSg SINE Alu 1 309 -1 1972 131 3 3 chr15 63929516 63929813 -21765941 + AluSx SINE Alu 1 297 -15 1825 106 73 0 chr15 63929815 63930088 -21765666 + AluSp SINE Alu 1 293 -20 212 0 0 35 chr15 63930088 63930117 -21765637 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1526 169 65 4 chr15 63930122 63930400 -21765354 + AluJb SINE Alu 1 295 -17 650 181 163 31 chr15 63930408 63930568 -21765186 + FRAM SINE Alu 1 176 0 1371 114 13 0 chr15 63930617 63930925 -21764829 + L1P5 LINE L1 5166 5476 -680 1026 165 11 16 chr15 63930925 63931107 -21764647 + AluJo SINE Alu 1 181 -131 1330 202 7 44 chr15 63931107 63931404 -21764350 + L1PA16 LINE L1 5866 6151 -15 693 202 0 0 chr15 63931555 63931674 -21764080 + FLAM_C SINE Alu 2 120 -13 1523 157 72 142 chr15 63931683 63931874 -21763880 + MLT2A2 LTR ERVL 1 204 -350 1879 121 7 14 chr15 63931874 63932171 -21763583 + AluSg SINE Alu 1 295 -15 1523 157 72 142 chr15 63932171 63932479 -21763275 + MLT2A2 LTR ERVL 204 470 -84 2006 138 3 0 chr15 63932479 63932776 -21762978 - AluSq SINE Alu -15 298 1 1523 157 72 142 chr15 63932776 63932856 -21762898 + MLT2A2 LTR ERVL 470 554 0 845 153 25 37 chr15 63932856 63933019 -21762735 + FRAM SINE Alu 2 162 -14 700 202 6 15 chr15 63933052 63933223 -21762531 - MER33 DNA MER1_type -240 84 1 207 146 42 42 chr15 63933233 63933281 -21762473 + T-rich Low_complexity Low_complexity 3 50 0 2150 109 7 0 chr15 63933405 63933709 -21762045 - AluSx SINE Alu -6 306 1 1179 145 5 0 chr15 63933719 63933905 -21761849 - AluJb SINE Alu -24 288 102 1394 196 0 47 chr15 63934075 63934371 -21761383 + AluJb SINE Alu 1 282 -30 181 138 0 0 chr15 63935525 63935554 -21760200 + L2 LINE L2 2689 2717 -597 335 253 49 65 chr15 63935603 63935821 -21759933 + L2 LINE L2 2701 3006 -307 578 186 30 108 chr15 63935893 63936060 -21759694 + L2 LINE L2 3159 3312 -1 2085 128 0 7 chr15 63936413 63936711 -21759043 - AluSq SINE Alu -17 296 1 1198 272 60 23 chr15 63937545 63937942 -21757812 - L2 LINE L2 -5 3308 2897 249 276 17 0 chr15 63937979 63938037 -21757717 - MER5B DNA MER1_type -66 112 54 361 290 20 10 chr15 63938244 63938344 -21757410 + MIR3 SINE MIR 101 201 -7 375 250 48 14 chr15 63939315 63939433 -21756321 + MER5B DNA MER1_type 3 176 -2 191 271 51 0 chr15 63939385 63939444 -21756310 - MER5B DNA MER1_type -2 176 115 * 680 193 253 0 chr15 63939743 63939945 -21755809 - MIR SINE MIR -5 257 5 237 33 0 0 chr15 63940336 63940366 -21755388 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1460 121 44 17 chr15 63940367 63940978 -21754776 - L1MB3 LINE L1 -12 6171 5489 2156 110 3 0 chr15 63940978 63941279 -21754475 - AluSc SINE Alu -5 304 3 1460 121 44 17 chr15 63941279 63941320 -21754434 - L1MB3 LINE L1 -694 5489 5451 275 275 50 0 chr15 63941368 63941448 -21754306 - L1MC5 LINE L1 -55 7906 7823 1118 143 6 0 chr15 63941449 63941624 -21754130 - AluJb SINE Alu -2 310 135 416 188 8 77 chr15 63941624 63941741 -21754013 - L1MC5 LINE L1 -132 7829 7721 213 161 65 16 chr15 63941984 63942046 -21753708 + GA-rich Low_complexity Low_complexity 3 67 0 199 140 40 0 chr15 63942059 63942109 -21753645 + GA-rich Low_complexity Low_complexity 2 53 0 306 0 0 0 chr15 63942152 63942186 -21753568 + (TG)n Simple_repeat Simple_repeat 2 35 0 1663 131 3 95 chr15 63942434 63942771 -21752983 - AluSx SINE Alu -6 306 1 1606 158 19 53 chr15 63943176 63943188 -21752566 - AluJb SINE Alu 0 446 435 576 114 0 48 chr15 63943188 63943293 -21752461 - L1MB7 LINE L1 -1 6183 6084 1606 158 19 53 chr15 63943293 63943633 -21752121 - AluJb SINE Alu -11 435 1 2168 108 6 22 chr15 63943668 63943983 -21751771 - AluSx SINE Alu -2 310 1 2055 127 3 0 chr15 63944386 63944686 -21751068 - AluSq SINE Alu -12 301 1 1844 222 126 47 chr15 63944729 63945214 -21750540 - L2 LINE L2 -106 3207 2762 1031 165 12 0 chr15 63945214 63945384 -21750370 - FAM SINE Alu -2 173 2 1844 222 126 47 chr15 63945384 63945733 -21750021 - L2 LINE L2 -551 2762 2304 288 161 18 36 chr15 63946053 63946109 -21749645 + MIR3 SINE MIR 105 159 -49 354 264 35 62 chr15 63946112 63946256 -21749498 + MER5B DNA MER1_type 22 161 -17 272 255 0 0 chr15 63946295 63946346 -21749408 + MIR3 SINE MIR 151 201 -7 1249 151 5 0 chr15 63947809 63948021 -21747733 + AluJo SINE Alu 96 308 -4 2508 40 0 0 chr15 63948660 63948956 -21746798 - AluY SINE Alu -15 296 1 308 242 274 0 chr15 63949685 63949780 -21745974 - L2 LINE L2 -1 3312 3192 1960 134 3 0 chr15 63950219 63950526 -21745228 - AluSx SINE Alu 0 308 1 1989 161 0 0 chr15 63950530 63950841 -21744913 - AluSx SINE Alu -1 311 1 252 0 0 0 chr15 63950853 63950881 -21744873 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2058 117 10 0 chr15 63950884 63951175 -21744579 - AluSx SINE Alu -18 294 1 1934 139 0 0 chr15 63951919 63952222 -21743532 + AluSx SINE Alu 1 303 0 1764 134 32 7 chr15 63952225 63952508 -21743246 + AluSg SINE Alu 11 300 -10 30 45 0 0 chr15 63952592 63952636 -21743118 + AT_rich Low_complexity Low_complexity 1 44 0 2161 116 3 0 chr15 63952640 63952951 -21742803 + AluSx SINE Alu 1 312 0 340 140 158 0 chr15 63952954 63953011 -21742743 - AluJo/FLAM SINE Alu -189 113 48 2425 37 10 0 chr15 63953487 63953781 -21741973 + AluY SINE Alu 1 297 -14 3755 88 25 4 chr15 63954270 63954790 -21740964 - L1PA11 LINE L1 0 6174 5644 216 280 110 42 chr15 63956571 63956689 -21739065 + MIR SINE MIR 23 148 -60 2256 58 0 17 chr15 63957436 63957727 -21738027 - AluY SINE Alu -25 286 1 2355 58 7 0 chr15 63958092 63958383 -21737371 + AluY SINE Alu 1 293 -18 1811 140 7 7 chr15 63958409 63958716 -21737038 + AluSx SINE Alu 6 312 0 407 117 0 13 chr15 63959385 63959459 -21736295 - AluSp SINE Alu -109 194 144 690 121 40 24 chr15 63959851 63959975 -21735779 - AluSg/x SINE Alu -9 301 176 183 263 109 55 chr15 63960199 63960492 -21735262 + L2 LINE L2 2838 3146 -126 2096 105 3 10 chr15 63960656 63960952 -21734802 + AluSq SINE Alu 3 296 -17 1229 173 121 37 chr15 63961215 63961487 -21734267 - AluJo SINE Alu -6 296 2 2049 120 0 0 chr15 63961625 63961916 -21733838 + AluSx SINE Alu 1 291 -21 574 191 81 58 chr15 63961933 63962034 -21733720 - L1ME3A LINE L1 -26 6144 6036 1967 135 20 0 chr15 63962034 63962331 -21733423 + AluSx SINE Alu 1 303 -9 574 191 81 58 chr15 63962331 63962402 -21733352 - L1ME3A LINE L1 -134 6036 5968 570 238 81 17 chr15 63962599 63962771 -21732983 - MIR SINE MIR -1 261 79 2052 136 0 10 chr15 63962878 63963179 -21732575 + AluSx SINE Alu 1 298 -14 661 196 0 0 chr15 63963221 63963328 -21732426 + MER4B-int LTR ERV1 1 107 -6651 1329 148 18 5 chr15 63963332 63963555 -21732199 + AluJb SINE Alu 59 327 0 388 0 0 0 chr15 63963555 63963598 -21732156 + (TAAA)n Simple_repeat Simple_repeat 2 104 0 963 96 43 53 chr15 63963599 63963787 -21731967 + MER4B-int LTR ERV1 100 285 -6473 424 132 26 0 chr15 63963829 63963905 -21731849 + MER4B-int LTR ERV1 238 315 -6443 2079 97 42 7 chr15 63964221 63964509 -21731245 - AluSx SINE Alu -9 303 6 557 151 217 0 chr15 63965062 63965168 -21730586 + FLAM_C SINE Alu 6 134 -9 2118 86 3 42 chr15 63965168 63965506 -21730248 + AluSg1 SINE Alu 1 309 0 2442 85 0 0 chr15 63967198 63967503 -21728251 - AluSg SINE Alu -5 305 1 25 75 0 0 chr15 63968541 63968594 -21727160 + GC_rich Low_complexity Low_complexity 1 53 0 1425 129 29 9 chr15 63969740 63969950 -21725804 - AluSg/x SINE Alu -14 296 83 1941 140 3 50 chr15 63970810 63971132 -21724622 + AluJb SINE Alu 1 307 -5 2645 56 0 0 chr15 63971226 63971528 -21724226 + AluY SINE Alu 1 302 -9 1274 74 0 0 chr15 63971909 63972072 -21723682 - L1PA7 LINE L1 -1 6153 5991 243 320 0 87 chr15 63972395 63972498 -21723256 + MIR SINE MIR 9 102 -106 715 85 7 106 chr15 63972949 63973090 -21722664 - L1PB1 LINE L1 -3 6148 6022 2192 112 0 41 chr15 63973090 63973404 -21722350 - AluSx SINE Alu -4 308 8 330 18 0 54 chr15 63973437 63973493 -21722261 - L1PB1 LINE L1 -111 6040 5988 1119 106 0 0 chr15 63974882 63975033 -21720721 + FRAM SINE Alu 1 147 -29 29 28 0 0 chr15 63975037 63975073 -21720681 + AT_rich Low_complexity Low_complexity 1 36 0 375 300 0 8 chr15 63975115 63975235 -21720519 + MIR SINE MIR 66 184 -78 2202 122 0 16 chr15 63975844 63976155 -21719599 - AluSx SINE Alu -6 306 1 832 157 8 22 chr15 63976202 63976336 -21719418 - FLAM_C SINE Alu -1 132 1 2268 114 0 3 chr15 63976396 63976702 -21719052 + AluSc SINE Alu 1 305 -4 1711 188 7 0 chr15 63976824 63977101 -21718653 - AluJb SINE Alu -33 279 1 913 152 0 0 chr15 63977104 63977236 -21718518 - AluJo/FLAM SINE Alu -169 133 2 556 227 98 17 chr15 63977589 63977768 -21717986 - MIR SINE MIR -60 202 7 767 127 8 25 chr15 63978096 63978214 -21717540 - AluSq/x SINE Alu -177 136 21 327 212 206 62 chr15 63978358 63978504 -21717250 - MIR SINE MIR -5 257 91 187 283 189 65 chr15 63978486 63978808 -21716946 + L2 LINE L2 1305 1666 -1648 * 2347 86 3 3 chr15 63978893 63979194 -21716560 - AluSc SINE Alu -8 301 1 1847 63 9 0 chr15 63979258 63979479 -21716275 - AluY SINE Alu 0 311 89 236 276 66 0 chr15 63980336 63980412 -21715342 + L2 LINE L2 3184 3264 -49 2114 140 7 7 chr15 63981202 63981510 -21714244 - AluSx SINE Alu -4 308 1 2049 127 10 3 chr15 63981820 63982112 -21713642 - AluSq SINE Alu -19 294 1 236 100 0 25 chr15 63982390 63982430 -21713324 - MIR3 SINE MIR -43 165 127 785 268 96 8 chr15 63983323 63983562 -21712192 - MIR SINE MIR -2 260 1 2322 114 0 10 chr15 63983779 63984087 -21711667 - AluSx SINE Alu -7 305 1 720 184 24 0 chr15 63984096 63984221 -21711533 - FLAM_C SINE Alu -10 133 6 212 357 40 16 chr15 63984241 63984367 -21711387 - MER5A DNA MER1_type -60 129 1 1789 146 0 51 chr15 63984499 63984672 -21711082 - AluSx SINE Alu -11 301 150 2346 99 7 0 chr15 63984672 63984975 -21710779 - AluSg SINE Alu -5 305 1 1789 146 0 51 chr15 63984975 63985116 -21710638 - AluSx SINE Alu -162 150 3 1810 129 72 4 chr15 63985164 63985442 -21710312 + AluJo SINE Alu 1 297 -15 1999 139 0 7 chr15 63985460 63985754 -21710000 + AluJb SINE Alu 1 292 -20 446 286 29 123 chr15 63985920 63986194 -21709560 + L2 LINE L2 1709 1898 -1416 2393 80 7 0 chr15 63986194 63986483 -21709271 - AluSg SINE Alu -19 291 1 446 286 29 123 chr15 63986483 63986803 -21708951 + L2 LINE L2 1898 2247 -1067 309 331 161 8 chr15 63986867 63986997 -21708757 + L2 LINE L2 3122 3271 -1 2476 56 7 3 chr15 63987382 63987685 -21708069 - AluY SINE Alu -7 304 1 366 298 59 12 chr15 63987689 63987852 -21707902 - L1MC/D LINE L1 -750 5396 5270 3034 112 48 10 chr15 63987862 63988360 -21707394 - LTR9B LTR ERV1 -86 558 42 1298 131 0 0 chr15 63988366 63988564 -21707190 - HUERS-P3 LTR ERV1 -1 8918 8721 1368 105 0 0 chr15 63988606 63988806 -21706948 - LTR9B LTR ERV1 0 644 445 21 36 0 0 chr15 63989174 63989202 -21706552 + AT_rich Low_complexity Low_complexity 1 28 0 777 162 15 37 chr15 63989203 63989339 -21706415 - FLAM_C SINE Alu 0 133 1 2305 119 0 0 chr15 63989672 63989974 -21705780 - AluSx SINE Alu -10 302 1 240 35 0 0 chr15 63990458 63990487 -21705267 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1999 117 7 14 chr15 63990720 63991035 -21704719 - AluSx SINE Alu 0 312 1 250 274 101 30 chr15 63991138 63991306 -21704448 - L1P5 LINE L1 -432 5724 5545 2211 134 0 0 chr15 63994994 63995299 -21700455 - AluSx SINE Alu -7 305 1 2304 114 0 3 chr15 63996529 63996836 -21698918 - AluSx SINE Alu -3 309 4 340 259 29 107 chr15 63997374 63997683 -21698071 - L1MC5 LINE L1 -280 7681 7397 280 292 33 33 chr15 63997685 63997805 -21697949 - L1MC5 LINE L1 -530 7431 7312 392 278 72 36 chr15 63997981 63998204 -21697550 - L1MC5 LINE L1 -740 7221 6991 3858 146 14 63 chr15 63998237 63998616 -21697138 - L1MB2 LINE L1 -1 6170 5774 1778 115 12 118 chr15 63998616 63998946 -21696808 + AluSg SINE Alu 1 295 -15 3858 146 14 63 chr15 63998946 63999356 -21696398 - L1MB2 LINE L1 -397 5774 5052 310 192 92 33 chr15 63999356 63999476 -21696278 - L1MC4 LINE L1 -981 7061 5381 440 338 192 18 chr15 64001258 64001934 -21693820 - L2 LINE L2 -5 3267 2473 336 326 53 23 chr15 64001946 64002078 -21693676 - L2 LINE L2 -493 2821 2686 1961 149 7 7 chr15 64002139 64002440 -21693314 - AluJb SINE Alu -10 302 2 2287 118 0 0 chr15 64002769 64003065 -21692689 - AluSx SINE Alu -16 296 1 3183 147 101 45 chr15 64003304 64003746 -21692008 - L1MB7 LINE L1 -91 6093 5677 1570 50 0 20 chr15 64003746 64003946 -21691808 + L1PA7 LINE L1 5959 6154 0 3183 147 101 45 chr15 64003946 64004170 -21691584 - L1MB7 LINE L1 -507 5677 5467 2276 92 7 3 chr15 64004170 64004465 -21691289 - AluSx SINE Alu -16 296 1 3183 147 101 45 chr15 64004465 64004621 -21691133 - L1MB7 LINE L1 -717 5467 5207 225 208 52 0 chr15 64004747 64004824 -21690930 + (TA)n Simple_repeat Simple_repeat 2 82 0 2202 104 0 3 chr15 64005644 64005924 -21689830 + AluSx SINE Alu 17 297 -15 302 100 17 0 chr15 64005924 64005984 -21689770 + (TA)n Simple_repeat Simple_repeat 1 61 0 496 147 118 0 chr15 64006534 64006636 -21689118 + MER3 DNA MER1_type 71 184 -25 1798 151 14 4 chr15 64006670 64006949 -21688805 - AluSx SINE Alu -30 282 1 521 284 90 19 chr15 64010422 64010690 -21685064 + L1MC4a LINE L1 5600 5886 -1922 1885 145 7 14 chr15 64010729 64011039 -21684715 + AluJb SINE Alu 3 310 0 1114 164 0 0 chr15 64011039 64011204 -21684550 + AluJb SINE Alu 134 298 -14 195 42 0 0 chr15 64011819 64011843 -21683911 + (GGA)n Simple_repeat Simple_repeat 3 26 0 372 268 127 14 chr15 64014491 64014633 -21681121 - MIR SINE MIR -10 252 95 213 308 31 0 chr15 64015345 64015410 -21680344 + L2 LINE L2 3154 3220 -52 189 94 0 0 chr15 64015410 64015442 -21680312 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 448 253 60 100 chr15 64015445 64015714 -21680040 - L1ME4a LINE L1 -16 6105 5848 185 108 27 0 chr15 64015781 64015818 -21679936 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 692 294 74 0 chr15 64016235 64016458 -21679296 - MIR SINE MIR -17 245 4 2435 66 0 50 chr15 64016519 64016839 -21678915 - AluY SINE Alu -7 304 1 2071 134 0 16 chr15 64017477 64017782 -21677972 - AluJo SINE Alu -1 311 12 2127 114 0 0 chr15 64017969 64018250 -21677504 + AluSg SINE Alu 13 293 -17 268 148 0 66 chr15 64018519 64018580 -21677174 + U2 snRNA snRNA 2 58 -130 2244 109 0 3 chr15 64019167 64019461 -21676293 - AluSx SINE Alu -19 293 1 757 305 204 19 chr15 64020389 64020903 -21674851 + L3 LINE CR1 924 1532 -45 1901 156 7 23 chr15 64021284 64021586 -21674168 + AluJo SINE Alu 1 297 -15 2439 66 0 7 chr15 64022246 64022549 -21673205 + AluY SINE Alu 2 302 -9 1772 161 31 7 chr15 64023222 64023508 -21672246 - AluJo SINE Alu -19 293 1 404 273 76 41 chr15 64023557 64023729 -21672025 + L2 LINE L2 3133 3310 -3 466 257 34 27 chr15 64023734 64023882 -21671872 - MIR3 SINE MIR -35 173 25 232 263 93 139 chr15 64024007 64024076 -21671678 + L3 LINE CR1 658 729 -848 1014 92 0 8 chr15 64024076 64024206 -21671548 + FLAM_C SINE Alu 1 129 -4 232 263 93 139 chr15 64024206 64024459 -21671295 + L3 LINE CR1 729 965 -612 316 333 23 111 chr15 64024741 64025047 -21670707 + L2 LINE L2 2906 3184 -88 330 302 63 16 chr15 64025180 64025306 -21670448 + L3 LINE CR1 1248 1379 -198 2495 33 0 20 chr15 64025977 64026277 -21669477 + AluY SINE Alu 1 294 -17 194 336 55 18 chr15 64026432 64026542 -21669212 - L2 LINE L2 -15 3298 3185 21 0 0 0 chr15 64026917 64026938 -21668816 + GC_rich Low_complexity Low_complexity 1 21 0 351 195 11 97 chr15 64027037 64027222 -21668532 + G-rich Low_complexity Low_complexity 1 169 0 2280 114 0 3 chr15 64030159 64030467 -21665287 - AluSx SINE Alu -3 309 3 816 200 7 0 chr15 64030476 64030611 -21665143 - AluJo SINE Alu -176 136 1 180 176 0 0 chr15 64031404 64031438 -21664316 + CT-rich Low_complexity Low_complexity 2 35 0 183 290 101 48 chr15 64031505 64031712 -21664042 - L2 LINE L2 -251 3021 2804 1676 146 56 28 chr15 64033408 64033696 -21662058 - AluJo SINE Alu -16 296 1 2382 85 10 0 chr15 64034858 64035164 -21660590 - AluSc SINE Alu 0 309 1 965 256 50 8 chr15 64037689 64037931 -21657823 + MIR SINE MIR 3 254 -8 365 270 72 0 chr15 64038423 64038534 -21657220 - MIR SINE MIR -71 191 73 219 381 61 14 chr15 64038550 64038697 -21657057 + L2 LINE L2 2828 2981 -291 603 223 124 21 chr15 64038710 64038952 -21656802 - HAL1 LINE L1 0 2507 2241 3296 111 24 69 chr15 64039001 64039622 -21656132 - LTR43 LTR ERV1 0 602 10 865 234 141 34 chr15 64039653 64040101 -21655653 - HAL1 LINE L1 -322 2185 1690 3644 255 146 20 chr15 64040160 64040369 -21655385 - HAL1 LINE L1 -616 1891 1710 1724 152 39 35 chr15 64040369 64040557 -21655197 - AluJb SINE Alu -1 311 120 231 36 0 0 chr15 64040557 64040585 -21655169 + (TG)n Simple_repeat Simple_repeat 1 28 0 1724 152 39 35 chr15 64040585 64040706 -21655048 - AluJb SINE Alu -192 120 1 3644 255 146 20 chr15 64040706 64042176 -21653578 - HAL1 LINE L1 -797 1710 1 254 333 183 24 chr15 64042178 64042424 -21653330 + L2 LINE L2 2974 3258 -14 293 82 20 0 chr15 64043642 64043691 -21652063 + (TG)n Simple_repeat Simple_repeat 1 50 0 457 256 45 9 chr15 64043862 64044005 -21651749 + MIR SINE MIR 16 168 -51 792 264 14 14 chr15 64044014 64044226 -21651528 + MIR SINE MIR 51 262 0 500 253 103 35 chr15 64045172 64045346 -21650408 - L2 LINE L2 -6 3307 3122 228 296 31 31 chr15 64045414 64045512 -21650242 + L2 LINE L2 2992 3089 -183 3687 244 123 15 chr15 64045531 64047137 -21648617 - L2 LINE L2 -1 3312 1461 269 318 108 23 chr15 64047163 64047292 -21648462 + L2 LINE L2 3133 3272 0 217 298 18 0 chr15 64047818 64047875 -21647879 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 2130 99 7 7 chr15 64048290 64048611 -21647143 - AluSx SINE Alu 0 321 1 233 194 60 30 chr15 64049171 64049238 -21646516 + MIR SINE MIR 84 152 -56 236 140 0 105 chr15 64051161 64051218 -21644536 + MIR SINE MIR 134 184 -78 396 200 0 55 chr15 64051624 64051703 -21644051 - MER53 DNA DNA -84 105 32 1883 148 34 24 chr15 64051703 64052023 -21643731 - AluSx SINE Alu 0 312 1 396 200 0 55 chr15 64052023 64052053 -21643701 - MER53 DNA DNA -157 32 2 1703 130 0 4 chr15 64052874 64053105 -21642649 + AluSx SINE Alu 1 230 -82 349 273 9 0 chr15 64053306 64053416 -21642338 + L1MEd LINE L1 541 651 -5468 21 57 0 0 chr15 64053417 64053452 -21642302 + AT_rich Low_complexity Low_complexity 1 35 0 2141 152 0 13 chr15 64053503 64053638 -21642116 + AluSx SINE Alu 2 137 -175 2266 117 0 10 chr15 64053638 64053947 -21641807 + AluSg1 SINE Alu 1 306 -3 2141 152 0 13 chr15 64053947 64054120 -21641634 + AluSx SINE Alu 137 306 -6 330 249 60 84 chr15 64054142 64054264 -21641490 + L1MEd LINE L1 639 773 -5258 2399 96 0 0 chr15 64054264 64054557 -21641197 + AluSx SINE Alu 1 293 -19 330 249 60 84 chr15 64054557 64054621 -21641133 + L1MEd LINE L1 773 837 -5194 400 361 55 58 chr15 64054642 64054969 -21640785 + L1MDa LINE L1 21 346 -6194 2122 132 0 28 chr15 64055466 64055784 -21639970 + AluSx SINE Alu 1 309 -3 638 269 57 80 chr15 64055785 64056172 -21639582 + L1MDa LINE L1 913 1290 -5253 1154 184 15 10 chr15 64056172 64056396 -21639358 + AluJb SINE Alu 82 306 0 4318 217 42 51 chr15 64056396 64056429 -21639325 + L1MDa LINE L1 1280 1312 -5228 1670 122 21 56 chr15 64056429 64056715 -21639039 - AluSq SINE Alu 0 313 38 4318 217 42 51 chr15 64056715 64057466 -21638288 + L1MDa LINE L1 1312 2068 -4472 2240 121 0 10 chr15 64057466 64057779 -21637975 + AluSx SINE Alu 1 310 -2 4318 217 42 51 chr15 64057779 64058549 -21637205 + L1MDa LINE L1 2068 2843 -3697 2453 87 0 16 chr15 64058549 64058859 -21636895 + AluSp SINE Alu 1 305 -8 4318 217 42 51 chr15 64058859 64059880 -21635874 + L1MDa LINE L1 2843 3835 -2705 1778 182 3 22 chr15 64060058 64060376 -21635378 - AluJo SINE Alu 0 312 1 324 0 0 0 chr15 64060569 64060605 -21635149 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 224 86 0 chr15 64060661 64060719 -21635035 - L2 LINE L2 0 3313 3251 190 347 32 16 chr15 64060848 64060972 -21634782 - L2 LINE L2 -213 3059 2934 422 208 216 72 chr15 64061123 64061387 -21634367 - L1MC4a LINE L1 -1630 6178 5877 856 264 22 0 chr15 64061416 64061647 -21634107 - L1MC4a LINE L1 -2019 5789 5554 2418 164 35 5 chr15 64061675 64062108 -21633646 - MER44D DNA MER2_type 0 605 105 743 148 0 0 chr15 64062306 64062421 -21633333 - MER44D DNA MER2_type -590 115 1 610 256 74 43 chr15 64062450 64062774 -21632980 - L2 LINE L2 -529 2785 2452 2256 121 0 3 chr15 64063020 64063318 -21632436 + AluSx SINE Alu 1 297 -15 881 147 84 0 chr15 64063331 64063474 -21632280 + FAM SINE Alu 20 174 -11 784 188 0 15 chr15 64063558 64063691 -21632063 + FLAM_C SINE Alu 2 132 -11 22 0 0 0 chr15 64063691 64063713 -21632041 + AT_rich Low_complexity Low_complexity 1 22 0 867 152 0 14 chr15 64064344 64064482 -21631272 + AluSg/x SINE Alu 177 312 0 320 98 20 0 chr15 64064769 64064820 -21630934 - MER30 DNA MER1_type 0 230 179 1596 198 6 6 chr15 64064827 64065140 -21630614 - AluSq SINE Alu 0 313 9 2278 171 120 97 chr15 64065418 64065567 -21630187 + Charlie1 DNA MER1_type 1426 1570 -1191 1978 148 0 7 chr15 64065567 64065864 -21629890 + AluSx SINE Alu 5 299 -13 2278 171 120 97 chr15 64065864 64065922 -21629832 + Charlie1 DNA MER1_type 1570 1625 -1136 1864 158 0 10 chr15 64065922 64066214 -21629540 + AluJb SINE Alu 13 301 -11 2278 171 120 97 chr15 64066214 64066782 -21628972 + Charlie1 DNA MER1_type 1625 2220 -541 1301 162 0 10 chr15 64066786 64066990 -21628764 + AluJb SINE Alu 87 288 -24 849 211 146 65 chr15 64067020 64067389 -21628365 + Charlie1 DNA MER1_type 2363 2761 0 2325 98 17 3 chr15 64067864 64068161 -21627593 + AluSx SINE Alu 1 301 -11 222 118 0 0 chr15 64068296 64068330 -21627424 + (CA)n Simple_repeat Simple_repeat 2 35 0 2221 123 3 0 chr15 64069475 64069777 -21625977 + AluSg SINE Alu 1 303 -7 540 0 0 0 chr15 64069934 64069994 -21625760 + (CA)n Simple_repeat Simple_repeat 1 60 0 378 0 0 0 chr15 64071271 64071313 -21624441 + (TG)n Simple_repeat Simple_repeat 2 43 0 224 282 70 14 chr15 64071614 64071685 -21624069 + MIR SINE MIR 11 85 -177 183 271 17 0 chr15 64072505 64072564 -21623190 + MIR SINE MIR 85 144 -64 315 71 0 0 chr15 64075351 64075393 -21620361 + (CA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr15 64076884 64076906 -21618848 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 64077459 64077488 -21618266 + AT_rich Low_complexity Low_complexity 1 29 0 275 315 0 0 chr15 64079764 64079929 -21615825 + A-rich Low_complexity Low_complexity 1 165 0 239 296 82 0 chr15 64080749 64080847 -21614907 - MIR SINE MIR -56 206 101 1950 138 6 31 chr15 64080902 64081220 -21614534 - AluSx SINE Alu -1 311 2 290 343 0 6 chr15 64082075 64082253 -21613501 + CT-rich Low_complexity Low_complexity 2 178 0 230 222 37 0 chr15 64083128 64083182 -21612572 - MIR SINE MIR -59 149 94 304 294 59 25 chr15 64083514 64083633 -21612121 - L2 LINE L2 -3 3310 3188 204 326 138 0 chr15 64083651 64083789 -21611965 - MIR3 SINE MIR -21 187 31 235 274 36 12 chr15 64084754 64084866 -21610888 - MIR SINE MIR -58 150 72 2210 112 0 0 chr15 64087586 64087898 -21607856 + AluSx SINE Alu 1 312 0 845 195 7 0 chr15 64088234 64088388 -21607366 + MER5A DNA MER1_type 2 156 -33 1491 204 4 4 chr15 64089132 64089406 -21606348 + AluJo SINE Alu 1 274 -38 566 189 4 34 chr15 64089520 64089754 -21606000 + GA-rich Low_complexity Low_complexity 1 227 0 362 249 129 43 chr15 64089780 64090242 -21605512 + L1MB7 LINE L1 5189 5701 -461 241 221 47 23 chr15 64090267 64090353 -21605401 + L1MB7 LINE L1 5798 5885 -236 929 261 56 20 chr15 64091000 64091341 -21604413 - L1MC4a LINE L1 -1765 6043 5691 517 207 9 17 chr15 64091865 64091981 -21603773 - FLAM_C SINE Alu -18 115 1 372 299 90 37 chr15 64092664 64092798 -21602956 - L2 LINE L2 -15 3257 3117 260 247 47 0 chr15 64092991 64093076 -21602678 - MIR SINE MIR -114 148 60 212 255 0 0 chr15 64093282 64093333 -21602421 + L2 LINE L2 2237 2287 -1027 218 286 124 19 chr15 64093333 64093438 -21602316 + L2 LINE L2 3180 3295 -18 183 162 0 0 chr15 64093588 64093625 -21602129 + GA-rich Low_complexity Low_complexity 6 42 0 408 297 119 40 chr15 64093632 64094397 -21601357 - L1MEd LINE L1 -3193 2936 2112 530 280 61 97 chr15 64094456 64094663 -21601091 - L1MEd LINE L1 -4974 1145 932 1431 153 27 96 chr15 64094663 64094997 -21600757 - AluJb SINE Alu -1 311 1 530 280 61 97 chr15 64094997 64095396 -21600358 - L1MEd LINE L1 -5187 932 561 221 0 35 0 chr15 64095815 64095844 -21599910 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 575 180 187 13 chr15 64095978 64096129 -21599625 + MIR SINE MIR 30 198 -64 2298 58 0 7 chr15 64096974 64097252 -21598502 - AluY SINE Alu -8 303 28 191 36 36 0 chr15 64097287 64097315 -21598439 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1482 173 17 21 chr15 64099544 64099833 -21595921 + L1MB7 LINE L1 5879 6166 -18 2020 145 3 7 chr15 64100669 64100972 -21594782 - AluSx SINE Alu -10 302 1 21 0 0 0 chr15 64102357 64102378 -21593376 + AT_rich Low_complexity Low_complexity 1 21 0 1602 194 3 3 chr15 64102390 64102679 -21593075 + AluJb SINE Alu 1 289 -23 323 214 22 0 chr15 64103498 64103587 -21592167 + (TATG)n Simple_repeat Simple_repeat 3 93 0 193 200 44 0 chr15 64103629 64103674 -21592080 + MER5A DNA MER1_type 1 47 -142 2438 70 0 10 chr15 64103782 64104084 -21591670 + AluY SINE Alu 1 299 -12 2270 102 0 13 chr15 64104649 64104953 -21590801 - AluSx SINE Alu -12 300 1 829 164 0 15 chr15 64104961 64105095 -21590659 - FLAM_C SINE Alu -1 132 1 305 167 0 0 chr15 64106471 64106525 -21589229 + MER5B DNA MER1_type 1 54 -124 2144 138 3 0 chr15 64106530 64106841 -21588913 + AluSx SINE Alu 1 312 0 584 182 212 0 chr15 64106870 64107002 -21588752 + AluJ SINE Alu 2 161 -151 888 219 25 0 chr15 64107012 64107213 -21588541 + L1MA10 LINE L1 6128 6333 -1 2354 113 6 0 chr15 64107378 64107689 -21588065 - AluSq SINE Alu 0 313 1 724 167 9 0 chr15 64107768 64107882 -21587872 + FLAM_C SINE Alu 1 115 -18 2244 114 76 15 chr15 64107882 64108224 -21587530 + THE1B LTR MaLR 1 364 0 821 208 0 0 chr15 64108253 64108407 -21587347 + AluJ SINE Alu 138 291 -11 2073 147 3 3 chr15 64108843 64109155 -21586599 - AluJb SINE Alu 0 312 1 2205 119 0 25 chr15 64109794 64110113 -21585641 - AluSx SINE Alu -1 311 1 244 342 60 0 chr15 64110168 64110285 -21585469 - MIR3 SINE MIR -47 161 38 1648 146 91 0 chr15 64110650 64110904 -21584850 - AluJo SINE Alu -35 277 1 454 198 40 40 chr15 64110926 64111052 -21584702 + L1MC4 LINE L1 7526 7651 -391 627 240 30 91 chr15 64111157 64111228 -21584526 + L1MC4 LINE L1 7697 7771 -271 2164 146 0 9 chr15 64111228 64111543 -21584211 - AluSx SINE Alu 0 312 1 627 240 30 91 chr15 64111543 64111833 -21583921 + L1MC4 LINE L1 7771 8036 -6 2120 139 7 0 chr15 64111855 64112164 -21583590 + AluSx SINE Alu 1 311 -1 230 222 42 0 chr15 64112345 64112417 -21583337 - HAL1 LINE L1 -120 2387 2313 722 148 78 8 chr15 64112464 64112592 -21583162 + FLAM_C SINE Alu 2 138 -5 2465 78 10 3 chr15 64112592 64112898 -21582856 + AluSg SINE Alu 1 308 -2 1011 168 6 6 chr15 64112947 64112961 -21582793 + AluJo SINE Alu 120 133 -179 2316 86 7 3 chr15 64112961 64113262 -21582492 + AluSp SINE Alu 1 302 -11 1011 168 6 6 chr15 64113262 64113420 -21582334 + AluJo SINE Alu 132 292 -20 313 0 0 0 chr15 64113531 64113565 -21582189 - U2 snRNA snRNA -154 34 1 340 305 16 23 chr15 64113928 64114056 -21581698 - MIR3 SINE MIR -48 160 34 868 227 48 5 chr15 64114332 64114539 -21581215 - MER46C DNA MER2_type -1 337 122 904 136 0 8 chr15 64114682 64114814 -21580940 + FLAM_C SINE Alu 3 133 0 1240 185 5 9 chr15 64114842 64115064 -21580690 + AluJo SINE Alu 85 305 -7 21 36 0 0 chr15 64115936 64115964 -21579790 + AT_rich Low_complexity Low_complexity 1 28 0 366 186 118 29 chr15 64116459 64116561 -21579193 + L1ME1 LINE L1 5651 5761 -405 777 113 70 49 chr15 64116565 64116707 -21579047 + MER46A DNA MER2_type 92 236 0 488 170 60 0 chr15 64116707 64116807 -21578947 + L1ME1 LINE L1 5765 5870 -296 2170 123 0 19 chr15 64116812 64117130 -21578624 + AluSx SINE Alu 1 312 0 1082 209 25 47 chr15 64117144 64117422 -21578332 + L1MEc LINE L1 45 316 -6080 793 134 0 15 chr15 64117423 64117557 -21578197 + FLAM_C SINE Alu 2 133 0 2295 193 36 6 chr15 64117607 64118094 -21577660 + L1MEc LINE L1 426 928 -5463 2361 110 0 0 chr15 64118094 64118403 -21577351 + AluSg SINE Alu 2 310 0 359 201 7 47 chr15 64118819 64118956 -21576798 + L1MEc LINE L1 1055 1187 -5209 742 161 0 25 chr15 64118956 64119074 -21576680 + FLAM_A SINE Alu 1 115 -18 359 201 7 47 chr15 64119074 64119085 -21576669 + L1MEc LINE L1 1187 1197 -5199 1139 87 0 0 chr15 64119094 64119232 -21576522 - AluSp/q SINE Alu -20 293 156 459 111 0 0 chr15 64119261 64119324 -21576430 + AluS SINE Alu 229 291 -18 770 199 4 91 chr15 64119324 64119555 -21576199 + L1MEc LINE L1 2220 2430 -3785 2164 83 7 0 chr15 64119555 64119863 -21575891 + AluSc SINE Alu 1 310 0 2379 66 7 23 chr15 64119945 64120250 -21575504 + AluSq SINE Alu 1 300 -13 754 169 8 8 chr15 64120250 64120368 -21575386 - FLAM_A SINE Alu -14 119 2 1076 183 53 30 chr15 64120406 64120669 -21575085 + L1MEc LINE L1 3440 3708 -2507 4228 254 40 25 chr15 64120704 64122165 -21573589 + ERVL LTR ERVL 3123 4642 -1122 588 289 29 12 chr15 64122168 64122341 -21573413 + LTR41 LTR ERVL 4 179 -594 421 226 13 137 chr15 64122561 64122687 -21573067 + LTR41 LTR ERVL 550 635 -138 2030 148 0 10 chr15 64122687 64122991 -21572763 - AluJo SINE Alu -11 301 1 421 226 13 137 chr15 64122991 64123098 -21572656 + LTR41 LTR ERVL 635 754 -19 1180 214 0 68 chr15 64123105 64123339 -21572415 + ERVL LTR ERVL 4636 4850 -914 2304 97 7 0 chr15 64123339 64123629 -21572125 + AluSx SINE Alu 1 292 -20 1180 214 0 68 chr15 64123629 64123674 -21572080 + ERVL LTR ERVL 4850 4896 -868 569 204 0 0 chr15 64123674 64123777 -21571977 - AluSp/q SINE Alu -9 304 202 1351 75 0 0 chr15 64123932 64124093 -21571661 - AluSx SINE Alu -151 161 1 194 312 60 41 chr15 64124397 64124615 -21571139 + MIR SINE MIR 15 236 -26 922 139 33 11 chr15 64125180 64125360 -21570394 - MER53 DNA DNA -5 184 1 227 220 68 0 chr15 64125543 64125602 -21570152 + L2 LINE L2 3207 3269 -3 504 280 119 10 chr15 64126662 64126855 -21568899 - MIR SINE MIR -1 261 48 948 204 11 21 chr15 64127075 64127266 -21568488 + MER20 DNA MER1_type 30 218 -1 314 263 70 0 chr15 64128372 64128486 -21567268 + MIR SINE MIR 24 145 -63 1077 146 59 36 chr15 64129221 64129440 -21566314 - AluJb SINE Alu -2 310 87 2063 137 3 3 chr15 64131607 64131920 -21563834 + AluSq SINE Alu 1 313 0 1432 79 12 106 chr15 64131976 64132171 -21563583 + MER30 DNA MER1_type 1 168 -62 2358 96 0 3 chr15 64132171 64132483 -21563271 + AluY SINE Alu 1 311 0 1432 79 12 106 chr15 64132483 64132541 -21563213 + MER30 DNA MER1_type 168 230 0 848 145 0 14 chr15 64132828 64132966 -21562788 - AluJb SINE Alu 0 312 177 240 314 108 49 chr15 64133453 64133638 -21562116 + MIR SINE MIR 51 246 -16 2167 101 26 3 chr15 64134061 64134367 -21561387 + AluSq SINE Alu 1 313 0 2131 125 0 7 chr15 64134382 64134678 -21561076 + AluSq SINE Alu 5 298 -15 2236 128 0 0 chr15 64135343 64135655 -21560099 - AluSx SINE Alu 0 312 1 232 288 29 50 chr15 64135783 64135922 -21559832 - L2 LINE L2 -37 3235 3100 21 36 0 0 chr15 64136046 64136074 -21559680 + AT_rich Low_complexity Low_complexity 1 28 0 419 184 0 35 chr15 64136171 64136258 -21559496 + L2 LINE L2 3187 3270 -2 2073 117 45 0 chr15 64137548 64137838 -21557916 - AluSx SINE Alu -9 303 1 339 25 0 0 chr15 64139955 64139995 -21555759 + (CA)n Simple_repeat Simple_repeat 1 40 0 1908 120 71 7 chr15 64140865 64141148 -21554606 - AluSx SINE Alu -9 303 3 1003 74 0 15 chr15 64141156 64141291 -21554463 - FLAM_C SINE Alu 0 133 1 265 254 159 38 chr15 64141510 64141683 -21554071 - MIR SINE MIR -56 206 23 459 296 14 28 chr15 64142256 64142398 -21553356 + L2 LINE L2 3133 3272 0 6160 58 26 8 chr15 64142855 64144042 -21551712 + SVA Other Other 6 1047 -339 2376 104 0 0 chr15 64144239 64144546 -21551208 + AluSc SINE Alu 1 307 -2 253 235 15 44 chr15 64144550 64144618 -21551136 + MER5A DNA MER1_type 60 125 -64 34 0 0 0 chr15 64144816 64144850 -21550904 + AT_rich Low_complexity Low_complexity 1 34 0 1939 164 0 3 chr15 64145178 64145471 -21550283 - AluJo SINE Alu -20 292 1 2094 149 6 22 chr15 64146449 64146804 -21548950 + L1MB7 LINE L1 5834 6182 -2 1347 119 74 5 chr15 64146874 64147076 -21548678 + AluSq SINE Alu 81 296 -17 2080 107 3 42 chr15 64147103 64147411 -21548343 + AluSq SINE Alu 1 296 -17 1858 170 3 0 chr15 64147421 64147715 -21548039 + AluJo SINE Alu 1 295 -17 2460 83 0 3 chr15 64148072 64148384 -21547370 - AluY SINE Alu 0 311 1 1788 159 0 66 chr15 64148525 64148859 -21546895 + AluSx SINE Alu 1 312 0 677 240 102 39 chr15 64148888 64149142 -21546612 + L1ME4a LINE L1 5533 5802 -319 1954 160 7 7 chr15 64149322 64149628 -21546126 + AluSx SINE Alu 1 306 -6 535 218 138 23 chr15 64150308 64150482 -21545272 + MIR SINE MIR 69 262 0 1569 83 0 5 chr15 64150734 64150938 -21544816 + AluSg/x SINE Alu 106 308 -4 326 233 142 0 chr15 64151658 64151778 -21543976 + L1ME4a LINE L1 5798 5934 -187 317 238 52 50 chr15 64151786 64151959 -21543795 + L1MC5 LINE L1 7341 7512 -449 2464 79 0 0 chr15 64151959 64152262 -21543492 + AluSx SINE Alu 1 303 -9 317 238 52 50 chr15 64152262 64152404 -21543350 + L1MC5 LINE L1 7512 7652 -309 1479 163 83 25 chr15 64152404 64152680 -21543074 + AluJb SINE Alu 1 292 -20 317 238 52 50 chr15 64152680 64152793 -21542961 + L1MC5 LINE L1 7652 7885 -76 2252 85 0 7 chr15 64153046 64153360 -21542394 - AluSg SINE Alu 0 312 1 375 41 0 0 chr15 64153996 64154045 -21541709 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1817 85 123 11 chr15 64154173 64154433 -21541321 - AluSg SINE Alu -18 292 4 2684 94 14 3 chr15 64154809 64155169 -21540585 + THE1B LTR MaLR 1 364 0 2254 117 3 0 chr15 64155261 64155569 -21540185 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr15 64155759 64155780 -21539974 + AT_rich Low_complexity Low_complexity 1 21 0 1832 156 0 49 chr15 64155858 64156185 -21539569 - AluJb SINE Alu -1 311 1 2302 117 3 0 chr15 64156405 64156713 -21539041 - AluSx SINE Alu -3 309 1 2223 117 7 0 chr15 64156942 64157241 -21538513 + AluSx SINE Alu 3 303 -9 1881 161 0 34 chr15 64157298 64157477 -21538277 - AluJo SINE Alu 0 312 128 198 0 0 0 chr15 64157477 64157499 -21538255 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2253 92 3 0 chr15 64157499 64157783 -21537971 - AluSx SINE Alu -27 285 1 1881 161 0 34 chr15 64157783 64157925 -21537829 - AluJo SINE Alu -182 130 1 305 167 0 0 chr15 64159301 64159355 -21536399 + MER5B DNA MER1_type 1 54 -124 2188 132 3 0 chr15 64159360 64159671 -21536083 + AluSx SINE Alu 1 312 0 584 182 212 0 chr15 64159700 64159832 -21535922 + AluJb SINE Alu 2 161 -151 888 219 25 0 chr15 64159842 64160043 -21535711 + L1MA10 LINE L1 6128 6333 -1 1932 132 30 3 chr15 64160217 64160513 -21535241 - AluSq SINE Alu -9 304 1 953 228 96 15 chr15 64160513 64160785 -21534969 + ERVL-E LTR ERVL 4886 5179 -585 302 250 110 10 chr15 64160940 64160967 -21534787 + ERVL-E LTR ERVL 5646 5755 -9 313 233 27 0 chr15 64160967 64161040 -21534714 + Ricksha DNA DNA 270 344 -910 975 214 36 0 chr15 64161051 64161247 -21534507 + MLT2E LTR ERVL 10 212 -416 1156 246 32 36 chr15 64161260 64161488 -21534266 + MLT2E LTR ERVL 319 547 -81 2522 76 0 0 chr15 64161488 64161790 -21533964 - AluSc SINE Alu -7 302 1 1156 246 32 36 chr15 64161790 64161870 -21533884 + MLT2E LTR ERVL 547 626 -2 2271 104 16 10 chr15 64162232 64162541 -21533213 + AluSx SINE Alu 1 311 -1 1224 167 0 89 chr15 64162878 64163124 -21532630 + AluJb SINE Alu 89 312 0 773 144 15 15 chr15 64163503 64163635 -21532119 - FLAM_A SINE Alu -1 132 1 2290 114 0 13 chr15 64163734 64164049 -21531705 - AluSx SINE Alu -1 311 1 1879 150 32 0 chr15 64164060 64164340 -21531414 - AluSx SINE Alu -23 289 1 34 24 0 0 chr15 64164566 64164607 -21531147 + AT_rich Low_complexity Low_complexity 1 41 0 2163 112 0 14 chr15 64164658 64164954 -21530800 + AluSx SINE Alu 1 292 -20 1851 117 12 0 chr15 64165134 64165391 -21530363 + AluY SINE Alu 37 296 -15 1737 167 3 19 chr15 64165403 64165720 -21530034 + AluJb SINE Alu 1 312 0 347 108 315 92 chr15 64165741 64165842 -21529912 - MER63 DNA MER1_type 0 1061 984 1702 108 156 22 chr15 64165842 64166111 -21529643 + AluSx SINE Alu 1 305 -7 347 108 315 92 chr15 64166111 64166139 -21529615 - MER63 DNA MER1_type -77 984 903 1943 167 0 3 chr15 64166265 64166564 -21529190 + AluJb SINE Alu 1 298 -14 2339 94 20 0 chr15 64167370 64167668 -21528086 - AluSc SINE Alu -5 304 1 788 230 176 0 chr15 64167730 64167808 -21527946 - MIR SINE MIR -21 241 178 450 190 0 10 chr15 64167808 64167908 -21527846 + L1MB4 LINE L1 6080 6178 -2 788 230 176 0 chr15 64167908 64168033 -21527721 - MIR SINE MIR -84 178 2 233 180 40 0 chr15 64169971 64170021 -21525733 + (TCTCTG)n Simple_repeat Simple_repeat 6 57 0 204 40 0 0 chr15 64170026 64170051 -21525703 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 2254 92 30 0 chr15 64170074 64170377 -21525377 - AluSx SINE Alu 0 312 1 222 118 0 0 chr15 64170748 64170782 -21524972 + (T)n Simple_repeat Simple_repeat 1 34 0 425 198 33 0 chr15 64170802 64170893 -21524861 + L1MD3 LINE L1 7892 7985 -10 3497 124 79 60 chr15 64170904 64171050 -21524704 + L1MB8 LINE L1 5461 5603 -575 2225 116 0 0 chr15 64171050 64171351 -21524403 + AluSx SINE Alu 2 302 -10 3497 124 79 60 chr15 64171351 64171904 -21523850 + L1MB8 LINE L1 5603 6173 -5 270 299 26 0 chr15 64171928 64172005 -21523749 + L2 LINE L2 3227 3305 -8 198 0 0 0 chr15 64172011 64172033 -21523721 + (TG)n Simple_repeat Simple_repeat 2 23 0 485 227 45 0 chr15 64172139 64172249 -21523505 + L2 LINE L2 3196 3310 -3 802 154 15 7 chr15 64172475 64172611 -21523143 + AluJo SINE Alu 1 137 -175 2208 110 10 0 chr15 64172613 64172904 -21522850 + AluSx SINE Alu 3 296 -16 215 284 68 14 chr15 64173231 64173305 -21522449 + MIR SINE MIR 37 114 -148 22 0 0 0 chr15 64173309 64173331 -21522423 + AT_rich Low_complexity Low_complexity 1 22 0 800 156 7 58 chr15 64173339 64173493 -21522261 - AluJb SINE Alu -31 281 136 1753 181 0 7 chr15 64173604 64173923 -21521831 + AluJb SINE Alu 1 317 0 1797 105 50 19 chr15 64174131 64174266 -21521488 - AluSp SINE Alu -47 266 137 248 0 31 0 chr15 64174266 64174298 -21521456 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1797 105 50 19 chr15 64174298 64174420 -21521334 - AluSp SINE Alu -176 137 1 1947 125 0 4 chr15 64175449 64175713 -21520041 - AluSx SINE Alu -48 264 2 364 285 151 29 chr15 64175807 64175979 -21519775 + MIR SINE MIR 5 197 -65 1913 141 7 17 chr15 64175979 64176276 -21519478 + AluSx SINE Alu 3 296 -16 1702 156 12 58 chr15 64176286 64176613 -21519141 + AluJo SINE Alu 1 312 0 230 233 33 33 chr15 64176625 64176685 -21519069 + AluYb8 SINE Alu 127 186 -122 728 187 0 29 chr15 64176685 64176814 -21518940 + FLAM_C SINE Alu 2 128 -184 2097 119 7 10 chr15 64176814 64177109 -21518645 - AluSx SINE Alu -17 295 2 359 199 0 27 chr15 64177126 64177207 -21518547 + FLAM SINE Alu 54 123 -10 848 168 15 0 chr15 64178510 64178641 -21517113 + FLAM_A SINE Alu 1 133 0 1889 133 30 26 chr15 64178675 64178977 -21516777 + AluSq SINE Alu 1 303 -10 942 112 0 8 chr15 64179221 64179355 -21516399 - FLAM_C SINE Alu 0 133 1 2154 122 0 10 chr15 64179369 64179664 -21516090 - AluSx SINE Alu -20 292 1 2221 122 0 0 chr15 64180168 64180472 -21515282 + AluSx SINE Alu 1 304 -8 337 336 13 13 chr15 64181363 64181512 -21514242 + L2 LINE L2 2898 3046 -226 741 145 8 0 chr15 64181880 64181997 -21513757 + FLAM_C SINE Alu 1 118 -15 2177 126 3 0 chr15 64182016 64182317 -21513437 - AluSx SINE Alu -10 302 1 38 22 0 0 chr15 64182326 64182371 -21513383 + AT_rich Low_complexity Low_complexity 1 45 0 523 262 77 16 chr15 64182390 64182573 -21513181 - MIR SINE MIR -51 211 18 392 313 75 35 chr15 64182554 64182781 -21512973 + MIR SINE MIR 21 256 -6 * 289 297 92 23 chr15 64182927 64183283 -21512471 + L2 LINE L2 2665 3104 -209 529 268 87 33 chr15 64183315 64183614 -21512140 + L2 LINE L2 2999 3313 0 2289 95 0 3 chr15 64183625 64183920 -21511834 - AluSx SINE Alu -18 294 1 454 220 0 0 chr15 64183968 64184059 -21511695 + L2 LINE L2 3181 3271 -1 201 230 0 40 chr15 64185012 64185086 -21510668 + (CGG)n Simple_repeat Simple_repeat 3 73 0 916 137 20 7 chr15 64185401 64185554 -21510200 + L1ME3A LINE L1 5456 5610 -723 2437 90 7 0 chr15 64185554 64185864 -21509890 - AluSx SINE Alu 0 312 1 252 176 40 0 chr15 64185877 64185959 -21509795 + L1ME3A LINE L1 5888 5976 -202 302 273 33 33 chr15 64185979 64186043 -21509711 + L1ME1 LINE L1 6035 6101 -65 2339 74 42 0 chr15 64186043 64186328 -21509426 + AluY SINE Alu 1 297 -14 302 273 33 33 chr15 64186328 64186384 -21509370 + L1ME1 LINE L1 6100 6155 -11 2318 94 20 0 chr15 64187134 64187432 -21508322 - AluSc SINE Alu -5 304 1 788 230 176 0 chr15 64187494 64187572 -21508182 - MIR SINE MIR -21 241 178 450 190 0 10 chr15 64187572 64187672 -21508082 + L1MB4 LINE L1 6080 6178 -2 788 230 176 0 chr15 64187672 64187797 -21507957 - MIR SINE MIR -84 178 2 246 282 90 0 chr15 64190686 64190764 -21504990 + L1MEd LINE L1 980 1064 -5466 272 294 27 7 chr15 64190953 64191099 -21504655 + L1MEd LINE L1 1262 1410 -5133 276 323 180 16 chr15 64191295 64191484 -21504270 + L1MEd LINE L1 1809 2028 -4512 459 291 63 53 chr15 64191795 64192114 -21503640 - L3 LINE CR1 -201 1376 1055 2137 132 0 13 chr15 64192720 64193030 -21502724 - AluSq SINE Alu -7 306 1 258 257 63 69 chr15 64193567 64193742 -21502012 - L1ME3A LINE L1 -10 6160 5987 1523 258 40 32 chr15 64193981 64194509 -21501245 + HAL1 LINE L1 1162 1693 -814 220 241 19 0 chr15 64195520 64195574 -21500180 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2305 108 0 0 chr15 64195887 64196194 -21499560 + AluSx SINE Alu 1 307 -5 1872 143 0 14 chr15 64196617 64196896 -21498858 + AluJo SINE Alu 12 286 -26 255 244 0 0 chr15 64196960 64197038 -21498716 - MIR SINE MIR -4 258 181 312 238 274 6 chr15 64197090 64197258 -21498496 + MIR SINE MIR 47 259 -3 1818 93 0 51 chr15 64197885 64198031 -21497723 + AluSg SINE Alu 1 130 -180 2400 82 0 0 chr15 64198031 64198325 -21497429 + AluY SINE Alu 1 294 -17 1818 93 0 51 chr15 64198325 64198435 -21497319 + AluSg SINE Alu 130 244 -66 2942 243 15 37 chr15 64198928 64200295 -21495459 - L1PBa LINE L1 -5219 1644 629 2402 97 0 0 chr15 64200414 64200712 -21495042 - AluSx SINE Alu -13 299 2 323 201 0 129 chr15 64200718 64200857 -21494897 + MIR SINE MIR 86 206 -56 469 270 57 102 chr15 64201279 64201450 -21494304 + HAL1 LINE L1 413 565 -1942 1966 135 38 3 chr15 64201450 64201739 -21494015 + AluSx SINE Alu 1 299 -13 469 270 57 102 chr15 64201739 64201882 -21493872 + HAL1 LINE L1 565 713 -1794 540 268 19 1 chr15 64202215 64202370 -21493384 - MIR SINE MIR -62 146 38 679 250 54 0 chr15 64202397 64202581 -21493173 + MIR SINE MIR 59 252 -10 309 100 0 0 chr15 64202702 64202752 -21493002 + (CA)n Simple_repeat Simple_repeat 1 50 0 469 42 28 0 chr15 64203471 64203543 -21492211 + (TG)n Simple_repeat Simple_repeat 2 75 0 1682 167 58 0 chr15 64203856 64204132 -21491622 - AluJb SINE Alu -20 292 1 233 273 71 10 chr15 64204476 64204575 -21491179 + L1ME4a LINE L1 5991 6095 -26 933 276 62 83 chr15 64205195 64205615 -21490139 - MLT1E LTR MaLR -182 411 1 292 294 232 38 chr15 64206494 64206705 -21489049 - MIR SINE MIR -5 257 6 324 0 0 0 chr15 64207061 64207097 -21488657 + (TA)n Simple_repeat Simple_repeat 2 37 0 2045 128 0 0 chr15 64207097 64207379 -21488375 - AluSx SINE Alu -28 284 3 969 266 105 60 chr15 64207595 64208080 -21487674 + MLT1K LTR MaLR 79 585 -3 6000 143 8 43 chr15 64208739 64208814 -21486940 + L1MA4 LINE L1 4925 5001 -1299 2429 69 3 0 chr15 64208814 64209103 -21486651 + AluSp SINE Alu 9 298 -15 6000 143 8 43 chr15 64209103 64209488 -21486266 + L1MA4 LINE L1 5001 5398 -902 2123 143 0 3 chr15 64209488 64209789 -21485965 + AluSx SINE Alu 1 300 -12 6000 143 8 43 chr15 64209789 64210748 -21485006 + L1MA4 LINE L1 5398 6299 -1 1840 156 14 3 chr15 64210818 64211100 -21484654 - AluJb SINE Alu -27 285 1 528 284 34 7 chr15 64211509 64211657 -21484097 - MLT1J LTR MaLR -290 221 70 201 162 0 0 chr15 64211722 64211759 -21483995 + T-rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr15 64211776 64211797 -21483957 + AT_rich Low_complexity Low_complexity 1 21 0 1969 158 0 7 chr15 64211811 64212115 -21483639 + AluJo SINE Alu 1 302 -10 2517 265 96 73 chr15 64212139 64213329 -21482425 + L1MCc LINE L1 20 1244 -5179 2433 91 0 0 chr15 64213329 64213626 -21482128 + AluSx SINE Alu 1 297 -15 2517 265 96 73 chr15 64213626 64213739 -21482015 + L1MCc LINE L1 1244 1353 -5070 10548 173 15 15 chr15 64213796 64215520 -21480234 - L1PB3 LINE L1 -7 6204 4483 233 29 29 0 chr15 64215520 64215554 -21480200 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 10548 173 15 15 chr15 64215554 64216854 -21478900 - L1PB3 LINE L1 -1728 4483 3184 698 41 21 0 chr15 64216854 64216951 -21478803 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1972 156 0 3 chr15 64216951 64217241 -21478513 - AluSx SINE Alu -24 288 1 1496 116 10 89 chr15 64217243 64217545 -21478209 - L1PB3 LINE L1 -5252 952 675 1994 164 27 3 chr15 64217727 64218094 -21477660 + L1MB3 LINE L1 5633 6008 -175 1739 144 99 7 chr15 64218332 64218616 -21477138 + AluJo SINE Alu 1 310 -2 703 214 0 62 chr15 64219198 64219365 -21476389 + AluJb SINE Alu 141 298 -14 2369 70 11 37 chr15 64219365 64219433 -21476321 - L1PA8 LINE L1 -9 6163 6095 2572 52 0 16 chr15 64219433 64219743 -21476011 + AluY SINE Alu 1 305 -6 2369 70 11 37 chr15 64219743 64220029 -21475725 - L1PA8 LINE L1 -77 6095 5818 207 259 74 0 chr15 64220476 64220530 -21475224 - L2 LINE L2 -65 3207 3150 510 315 70 73 chr15 64220636 64221372 -21474382 + L2 LINE L2 2545 3272 0 2229 114 0 0 chr15 64221476 64221775 -21473979 - AluSg SINE Alu -11 299 1 1874 173 0 16 chr15 64221831 64222144 -21473610 + AluJo SINE Alu 1 308 -4 207 0 0 0 chr15 64222227 64222250 -21473504 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 751 277 110 24 chr15 64222286 64222687 -21473067 - LTR33 LTR ERVL -38 483 11 2014 146 0 23 chr15 64223087 64223388 -21472366 + AluSx SINE Alu 1 294 -18 340 314 82 36 chr15 64223675 64223869 -21471885 - L1MCc LINE L1 -4122 3000 2798 1647 152 19 67 chr15 64223880 64224217 -21471537 + AluJo SINE Alu 5 312 0 2170 124 0 3 chr15 64224283 64224581 -21471173 + AluSq SINE Alu 1 297 -16 966 248 60 68 chr15 64224581 64225081 -21470673 - L1MC4 LINE L1 -143 7899 7404 203 0 37 0 chr15 64225199 64225226 -21470528 + (TA)n Simple_repeat Simple_repeat 2 29 0 338 263 115 62 chr15 64225230 64225286 -21470468 - L1MCc LINE L1 -4358 2583 2531 2170 130 0 0 chr15 64225286 64225579 -21470175 - AluSx SINE Alu -19 293 1 338 263 115 62 chr15 64225579 64225731 -21470023 - L1MCc LINE L1 -4410 2531 2364 552 150 0 0 chr15 64226497 64226597 -21469157 + L1MA7 LINE L1 6191 6290 -1 302 277 108 44 chr15 64226700 64227138 -21468616 + L1MC/D LINE L1 4745 5226 -920 580 301 62 20 chr15 64227159 64227287 -21468467 + L1MC/D LINE L1 5270 5391 -914 2087 139 7 10 chr15 64227287 64227589 -21468165 + AluSx SINE Alu 1 301 -11 580 301 62 20 chr15 64227589 64227791 -21467963 + L1MC/D LINE L1 5391 5614 -691 1896 125 32 0 chr15 64227791 64228072 -21467682 + AluSx SINE Alu 5 294 -18 580 301 62 20 chr15 64228072 64228189 -21467565 + L1MC/D LINE L1 5614 5725 -580 698 123 23 0 chr15 64228197 64228368 -21467386 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 1041 259 53 0 chr15 64228707 64229120 -21466634 - L1MCc LINE L1 -4892 1531 1385 980 255 42 93 chr15 64229124 64229258 -21466496 + L1PBa LINE L1 3 142 -6721 2199 124 13 0 chr15 64229258 64229557 -21466197 - AluSx SINE Alu -9 303 1 980 255 42 93 chr15 64229557 64229897 -21465857 + L1PBa LINE L1 142 453 -6410 186 304 89 0 chr15 64230790 64230846 -21464908 - MIR3 SINE MIR -136 72 12 963 179 17 0 chr15 64230973 64231146 -21464608 - MER5A DNA MER1_type -7 182 7 21 0 0 0 chr15 64231721 64231742 -21464012 + AT_rich Low_complexity Low_complexity 1 21 0 2406 102 0 0 chr15 64231749 64232053 -21463701 + AluSq SINE Alu 1 304 -9 321 169 51 0 chr15 64232438 64232497 -21463257 - MER5A DNA MER1_type -122 67 6 359 333 108 22 chr15 64232782 64233004 -21462750 - MIR SINE MIR -17 245 5 2107 113 14 0 chr15 64233286 64233568 -21462186 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr15 64233572 64233593 -21462161 + AT_rich Low_complexity Low_complexity 1 21 0 280 203 0 14 chr15 64233650 64233724 -21462030 - L1ME4a LINE L1 -2 6119 6047 982 180 28 37 chr15 64233792 64234009 -21461745 + MER20 DNA MER1_type 1 215 -4 470 226 157 19 chr15 64234468 64234627 -21461127 + MER5A DNA MER1_type 9 189 0 335 236 75 19 chr15 64236434 64236540 -21459214 - MIR SINE MIR -87 175 64 1101 245 40 96 chr15 64236544 64236619 -21459135 - L1MC4a LINE L1 -1623 6185 6107 2217 132 0 0 chr15 64236619 64236922 -21458832 + AluSx SINE Alu 1 303 -9 1101 245 40 96 chr15 64236922 64237044 -21458710 - L1MC4a LINE L1 -1701 6107 5980 1561 375 7 0 chr15 64237044 64237345 -21458409 - AluY SINE Alu -8 303 1 1101 245 40 96 chr15 64237345 64237697 -21458057 - L1MC4a LINE L1 -1828 5980 5666 459 0 0 0 chr15 64238305 64238356 -21457398 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2015 115 11 11 chr15 64238357 64238643 -21457111 - AluSg SINE Alu -24 286 1 1959 152 0 3 chr15 64239551 64239840 -21455914 + AluJo SINE Alu 1 288 -24 220 256 67 44 chr15 64240264 64240354 -21455400 + MIR SINE MIR 8 99 -163 536 229 15 0 chr15 64240366 64240497 -21455257 - FLAM_C SINE Alu -3 140 8 615 102 0 11 chr15 64241921 64242009 -21453745 + AluS SINE Alu 8 94 -219 283 319 44 16 chr15 64242331 64242532 -21453222 + MIR SINE MIR 2 243 -19 301 180 49 0 chr15 64242617 64242678 -21453076 + MIR SINE MIR 86 149 -59 407 181 43 21 chr15 64243131 64243225 -21452529 - MIR SINE MIR -55 153 58 294 308 54 29 chr15 64244688 64244885 -21450869 - MIR SINE MIR -37 225 21 319 272 142 12 chr15 64245542 64245704 -21450050 - L2 LINE L2 -173 3099 2917 496 237 89 15 chr15 64245834 64245969 -21449785 + MIR SINE MIR 95 239 -23 240 260 96 20 chr15 64247068 64247207 -21448547 + MIR SINE MIR 43 193 -62 272 265 0 63 chr15 64247455 64247644 -21448110 + C-rich Low_complexity Low_complexity 2 178 0 2215 85 3 3 chr15 64248036 64248355 -21447399 - AluSx SINE Alu 0 319 1 376 328 25 5 chr15 64249526 64249724 -21446030 - MIR SINE MIR -12 250 49 221 132 0 26 chr15 64253314 64253352 -21442402 - MIR SINE MIR -63 145 109 308 258 109 15 chr15 64254903 64255086 -21440668 + MIR SINE MIR 22 230 -32 228 272 37 12 chr15 64256030 64256111 -21439643 + MIR SINE MIR 65 147 -115 2149 134 59 3 chr15 64256459 64256816 -21438938 + MSTA LTR MaLR 52 428 0 25 65 0 0 chr15 64257168 64257214 -21438540 + AT_rich Low_complexity Low_complexity 1 46 0 2417 107 0 0 chr15 64257230 64257539 -21438215 + AluSq SINE Alu 1 309 -4 2228 106 0 37 chr15 64257543 64257864 -21437890 + AluSg SINE Alu 1 309 -1 2118 123 7 3 chr15 64258266 64258559 -21437195 + AluSx SINE Alu 3 296 -16 207 100 0 0 chr15 64258574 64258604 -21437150 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 434 221 12 20 chr15 64258728 64258869 -21436885 + MLT1H LTR MaLR 453 549 0 2385 112 0 0 chr15 64258995 64259299 -21436455 - AluSq SINE Alu -9 304 1 341 326 65 16 chr15 64260165 64260349 -21435405 + MIR SINE MIR 20 212 -50 987 110 0 22 chr15 64261618 64261754 -21434000 - AluSg/x SINE Alu -16 296 164 1771 147 84 4 chr15 64261870 64262143 -21433611 + AluJb SINE Alu 1 295 -17 2270 93 26 0 chr15 64262540 64262842 -21432912 - AluY SINE Alu -1 310 1 485 278 105 5 chr15 64262988 64263179 -21432575 - MLT1J2 LTR MaLR 0 450 241 2313 99 0 3 chr15 64263642 64263934 -21431820 - AluSc SINE Alu -18 291 1 848 189 12 102 chr15 64265415 64265452 -21430302 - MER58A DNA MER1_type -2198 222 183 2058 137 6 19 chr15 64265452 64265767 -21429987 - AluSx SINE Alu -1 311 1 848 189 12 102 chr15 64265767 64265973 -21429781 - MER58A DNA MER1_type -2237 183 1 203 206 0 48 chr15 64266063 64266126 -21429628 + CT-rich Low_complexity Low_complexity 2 61 0 2318 89 7 0 chr15 64267239 64267532 -21428222 + AluSp SINE Alu 15 309 -4 406 91 0 0 chr15 64268332 64268387 -21427367 - MLT2A1 LTR ERVL 0 444 390 228 182 0 0 chr15 64268392 64268436 -21427318 + (TA)n Simple_repeat Simple_repeat 2 45 0 2813 85 25 22 chr15 64268438 64268839 -21426915 - MLT2A1 LTR ERVL -40 404 3 377 345 7 0 chr15 64268923 64269065 -21426689 + (TG)n Simple_repeat Simple_repeat 1 143 0 355 141 0 0 chr15 64269629 64269693 -21426061 - MLT2A2 LTR ERVL -389 64 1 415 250 6 6 chr15 64269847 64270023 -21425731 + (TG)n Simple_repeat Simple_repeat 1 176 0 2244 94 0 0 chr15 64270399 64270698 -21425056 - AluSc SINE Alu -10 299 1 272 79 26 0 chr15 64271086 64271124 -21424630 - MSTA LTR MaLR 0 428 390 1270 127 95 9 chr15 64271124 64271345 -21424409 - MSTA LTR MaLR -188 240 1 250 143 0 0 chr15 64271388 64271430 -21424324 + MER116 DNA Mariner 14 55 -25 417 342 33 16 chr15 64271785 64271969 -21423785 + MIR SINE MIR 59 245 -17 1355 67 6 0 chr15 64271976 64272154 -21423600 + L1MA1 LINE L1 6120 6298 -4 1093 167 9 14 chr15 64272186 64272424 -21423330 - AluJb SINE Alu 0 310 74 237 261 11 45 chr15 64272430 64272465 -21423289 - AluJo SINE Alu -132 170 135 2257 83 7 7 chr15 64272465 64272766 -21422988 - AluY SINE Alu -10 301 1 237 261 11 45 chr15 64272766 64272818 -21422936 - AluJo SINE Alu -167 135 86 1049 203 42 5 chr15 64272818 64273030 -21422724 - AluJo SINE Alu -92 220 1 1604 210 105 74 chr15 64273098 64273578 -21422176 - MLT1E LTR MaLR 0 593 91 1599 133 4 33 chr15 64273578 64273876 -21421878 + AluSx SINE Alu 28 312 0 1604 210 105 74 chr15 64273876 64273966 -21421788 - MLT1E LTR MaLR -502 91 5 26 64 0 0 chr15 64274068 64274115 -21421639 + AT_rich Low_complexity Low_complexity 1 47 0 1741 147 18 7 chr15 64274282 64274568 -21421186 + AluSx SINE Alu 1 289 -23 415 272 169 21 chr15 64274672 64274962 -21420792 + L1ME LINE L1 5486 5818 -303 2070 120 0 13 chr15 64274973 64275290 -21420464 + AluSp SINE Alu 1 313 0 492 202 11 0 chr15 64275593 64275687 -21420067 - FRAM SINE Alu -25 151 57 417 20 0 0 chr15 64275789 64275839 -21419915 + (CA)n Simple_repeat Simple_repeat 2 51 0 196 277 170 0 chr15 64275871 64275983 -21419771 + MIR SINE MIR 22 152 -56 275 185 19 0 chr15 64276974 64277028 -21418726 - MIR SINE MIR -68 140 86 2142 115 0 10 chr15 64279508 64279820 -21415934 + AluSx SINE Alu 1 309 -3 234 202 57 3 chr15 64279987 64280070 -21415684 - MIR SINE MIR -55 153 66 375 169 0 0 chr15 64281866 64281937 -21413817 + (CA)n Simple_repeat Simple_repeat 2 72 0 208 70 47 23 chr15 64282832 64282875 -21412879 + A-rich Low_complexity Low_complexity 2 45 0 22 0 0 0 chr15 64283435 64283457 -21412297 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 64284015 64284043 -21411711 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr15 64285205 64285241 -21410513 + AT_rich Low_complexity Low_complexity 1 36 0 1796 106 84 4 chr15 64286511 64286785 -21408969 - AluSg SINE Alu -14 296 1 732 186 0 23 chr15 64288628 64288757 -21406997 + FLAM_A SINE Alu 1 126 -7 190 263 13 53 chr15 64289134 64289210 -21406544 + MIR3 SINE MIR 117 189 -19 257 135 0 0 chr15 64289807 64289844 -21405910 - MIR SINE MIR -62 146 110 1166 112 79 0 chr15 64290061 64290275 -21405479 + L1MA8 LINE L1 6060 6290 -1 2769 236 118 24 chr15 64290329 64292110 -21403644 + L1ME2 LINE L1 4215 6154 -10 467 268 165 27 chr15 64292308 64292532 -21403222 - MIR SINE MIR -6 256 2 198 219 49 0 chr15 64294037 64294078 -21401676 - MIR SINE MIR -101 161 119 1279 316 136 15 chr15 64294323 64295168 -21400586 + L2 LINE L2 1886 2832 -482 210 308 19 77 chr15 64295235 64295339 -21400415 + L2 LINE L2 2954 3051 -221 196 268 70 14 chr15 64295561 64295632 -21400122 + L2 LINE L2 2678 2752 -562 201 313 179 44 chr15 64295966 64296263 -21399491 - L2 LINE L2 -1 3271 2935 367 238 177 14 chr15 64297345 64297492 -21398262 + L2 LINE L2 3026 3196 -117 366 317 63 36 chr15 64297687 64297908 -21397846 + L2 LINE L2 2328 2554 -760 319 292 67 25 chr15 64298792 64298912 -21396842 + LTR67 LTR ERVL 428 552 -5 340 235 29 103 chr15 64299155 64299215 -21396539 + MIR SINE MIR 44 90 -172 1883 126 7 3 chr15 64299215 64299509 -21396245 - AluJb SINE Alu -17 295 1 340 235 29 103 chr15 64299509 64299584 -21396170 + MIR SINE MIR 90 169 -93 1853 68 8 4 chr15 64299589 64299838 -21395916 - AluSp SINE Alu -11 302 53 378 111 0 19 chr15 64299839 64299893 -21395861 - FRAM/FAM SINE Alu -105 70 18 866 256 72 79 chr15 64300056 64300273 -21395481 + L1MC4a LINE L1 5277 5494 -2314 1989 113 0 0 chr15 64300273 64300547 -21395207 + AluSg SINE Alu 1 274 -36 866 256 72 79 chr15 64300547 64300883 -21394871 + L1MC4a LINE L1 5494 5826 -1982 * 2392 189 24 17 chr15 64300868 64301328 -21394426 + L1MC1 LINE L1 7 469 -5957 1044 183 71 4 chr15 64301335 64301575 -21394179 + L1MC1 LINE L1 1052 1307 -5119 802 138 0 39 chr15 64301575 64301705 -21394049 + FLAM_C SINE Alu 1 125 -8 2231 98 10 0 chr15 64301709 64302014 -21393740 + AluSp SINE Alu 1 308 -5 4521 233 76 37 chr15 64302022 64302079 -21393675 + L1MC1 LINE L1 2532 2585 -4028 1570 110 0 4 chr15 64302079 64302306 -21393448 + AluSc SINE Alu 71 296 -13 4521 233 76 37 chr15 64302306 64302752 -21393002 + L1MC1 LINE L1 2585 3012 -3601 2352 80 0 3 chr15 64302752 64303064 -21392690 + AluY SINE Alu 1 311 0 4521 233 76 37 chr15 64303064 64303075 -21392679 + L1MC1 LINE L1 3012 3021 -3592 1597 191 0 3 chr15 64303075 64303358 -21392396 + AluJo SINE Alu 1 282 -30 4521 233 76 37 chr15 64303358 64303490 -21392264 + L1MC1 LINE L1 3021 3146 -3467 1849 163 0 0 chr15 64303490 64303791 -21391963 + AluJb SINE Alu 1 301 -11 4521 233 76 37 chr15 64303791 64304298 -21391456 + L1MC1 LINE L1 3146 3632 -2981 2265 102 0 0 chr15 64304298 64304601 -21391153 + AluSx SINE Alu 1 303 -9 4521 233 76 37 chr15 64304601 64306845 -21388909 + L1MC1 LINE L1 3632 6188 -425 729 234 7 7 chr15 64307303 64307457 -21388297 + AluJb SINE Alu 2 155 -157 889 92 202 81 chr15 64307748 64307921 -21387833 - MER46A DNA MER2_type -35 201 8 1262 131 45 5 chr15 64308818 64309040 -21386714 - AluJb SINE Alu -81 231 1 185 316 123 26 chr15 64309042 64309156 -21386598 + L3 LINE CR1 1089 1213 -364 180 0 0 0 chr15 64309156 64309176 -21386578 + (T)n Simple_repeat Simple_repeat 1 20 0 2213 96 0 28 chr15 64309188 64309510 -21386244 + AluSq SINE Alu 1 313 0 698 213 47 33 chr15 64309784 64309995 -21385759 - L1ME3 LINE L1 -29 6133 5920 181 219 0 0 chr15 64310230 64310262 -21385492 + MIR3 SINE MIR 158 189 -19 231 250 0 16 chr15 64310905 64310969 -21384785 + (CCG)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr15 64311354 64311375 -21384379 + GC_rich Low_complexity Low_complexity 1 21 0 575 154 73 16 chr15 64313235 64313358 -21382396 - FLAM_C SINE Alu -2 131 2 191 353 59 0 chr15 64313432 64313500 -21382254 + MIR SINE MIR 20 91 -171 1841 56 0 9 chr15 64314238 64314469 -21381285 + L1PA7 LINE L1 5926 6154 0 2176 86 17 0 chr15 64314660 64314950 -21380804 - AluSg SINE Alu -15 295 1 2397 84 0 0 chr15 64315141 64315451 -21380303 + AluSx SINE Alu 1 310 -2 1358 173 40 0 chr15 64315453 64315702 -21380052 - AluJo SINE Alu -38 274 16 1237 233 93 10 chr15 64315711 64316118 -21379636 - L1M4 LINE L1 -1539 4607 4167 292 83 0 0 chr15 64316118 64316166 -21379588 - AluSp/q SINE Alu 0 303 256 1294 225 252 9 chr15 64317661 64318101 -21377653 - LTR10B LTR ERV1 0 547 1 26975 237 22 21 chr15 64318101 64324801 -21370953 - LTR10B-int LTR ERV1 0 7783 1074 3797 184 78 6 chr15 64324911 64325150 -21370604 - LTR10B-int LTR ERV1 -5811 838 618 252 0 0 0 chr15 64325150 64325178 -21370576 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 3797 184 78 6 chr15 64325178 64325720 -21370034 - LTR10B-int LTR ERV1 -6031 618 1 2397 91 0 28 chr15 64325735 64326055 -21369699 + AluY SINE Alu 1 311 0 1145 180 30 69 chr15 64326055 64326492 -21369262 - LTR10B LTR ERV1 -5 542 1 438 211 0 11 chr15 64327055 64327150 -21368604 + LTR9B LTR ERV1 7 100 -544 1158 116 0 0 chr15 64327150 64327305 -21368449 - AluSg/x SINE Alu -2 308 154 2204 173 107 7 chr15 64327308 64327766 -21367988 + LTR9B LTR ERV1 141 644 0 342 0 0 0 chr15 64328444 64328482 -21367272 + (TG)n Simple_repeat Simple_repeat 2 39 0 435 19 0 0 chr15 64329789 64329841 -21365913 + (TG)n Simple_repeat Simple_repeat 2 53 0 2230 131 0 0 chr15 64329979 64330276 -21365478 - AluSx SINE Alu -15 297 1 760 210 231 12 chr15 64330744 64331077 -21364677 - Charlie1 DNA MER1_type 0 2761 2356 1196 181 0 9 chr15 64331097 64331312 -21364442 - AluJb SINE Alu -1 311 99 387 231 58 74 chr15 64331393 64331636 -21364118 - L1ME4a LINE L1 -3 6118 5880 2566 70 0 3 chr15 64331636 64331948 -21363806 - AluY SINE Alu 0 311 1 569 320 127 30 chr15 64332006 64332368 -21363386 + L1M4 LINE L1 4191 4587 -1559 1035 191 0 7 chr15 64332372 64332613 -21363141 + AluSx SINE Alu 2 308 -4 236 131 50 20 chr15 64332622 64332721 -21363033 + (TA)n Simple_repeat Simple_repeat 1 102 0 839 112 0 0 chr15 64333132 64333239 -21362515 + FLAM_C SINE Alu 1 107 -36 186 43 0 0 chr15 64333239 64333262 -21362492 + (TC)n Simple_repeat Simple_repeat 1 23 0 195 114 0 0 chr15 64333263 64333298 -21362456 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr15 64333527 64333558 -21362196 + (CATA)n Simple_repeat Simple_repeat 2 32 0 292 245 75 19 chr15 64333775 64333881 -21361873 + L2 LINE L2 1903 2014 -1300 235 314 31 68 chr15 64333881 64334072 -21361682 + L1MC/D LINE L1 5739 5922 -1886 219 327 116 45 chr15 64334348 64334547 -21361207 + L2 LINE L2 2139 2351 -963 2227 115 0 0 chr15 64334812 64335099 -21360655 - AluSq SINE Alu -26 287 1 871 41 98 0 chr15 64335163 64335286 -21360468 - LTR15 LTR ERV1 -9 484 350 1006 181 126 15 chr15 64335294 64335493 -21360261 + 7SLRNA srpRNA srpRNA 95 315 -5 231 36 0 0 chr15 64336528 64336556 -21359198 + (TGGGGG)n Simple_repeat Simple_repeat 5 32 0 223 288 190 19 chr15 64339421 64339579 -21356175 - MIR SINE MIR -64 144 4 1531 127 25 20 chr15 64341666 64341911 -21353843 - AluJb SINE Alu -32 280 35 288 277 12 12 chr15 64342038 64342121 -21353633 + MIR SINE MIR 66 148 -114 195 42 0 0 chr15 64342863 64342887 -21352867 + (CCCTG)n Simple_repeat Simple_repeat 5 28 0 238 329 12 0 chr15 64345405 64345487 -21350267 + MIR SINE MIR 65 147 -61 306 175 18 0 chr15 64345757 64345835 -21349919 - MIR SINE MIR -62 146 104 201 239 43 86 chr15 64346151 64346247 -21349507 + MIR SINE MIR 97 189 -73 2302 94 0 7 chr15 64346247 64346544 -21349210 - AluY SINE Alu -16 295 1 201 239 43 86 chr15 64346544 64346564 -21349190 + MIR SINE MIR 189 208 -54 1270 151 48 10 chr15 64347367 64347573 -21348181 - AluJb SINE Alu -16 296 83 231 357 48 8 chr15 64347989 64348115 -21347639 + L2 LINE L2 2919 3049 -223 249 235 111 0 chr15 64348424 64348505 -21347249 + MER5A DNA MER1_type 47 136 -53 248 312 64 0 chr15 64352417 64352526 -21343228 - L2 LINE L2 -1 3271 3156 751 190 0 29 chr15 64353158 64353295 -21342459 - FLAM_C SINE Alu 0 133 1 213 254 75 0 chr15 64353807 64353874 -21341880 - MIR SINE MIR -63 145 74 312 225 14 0 chr15 64355861 64355932 -21339822 - MER63 DNA MER1_type -9 1053 982 * 390 273 27 0 chr15 64355927 64356037 -21339717 - MER63 DNA MER1_type -321 741 3 2643 90 14 110 chr15 64356076 64356567 -21339187 - MLT2A1 LTR ERVL 0 444 1 243 103 0 0 chr15 64357725 64357764 -21337990 + (TG)n Simple_repeat Simple_repeat 2 40 0 244 296 0 0 chr15 64357765 64357823 -21337931 + (TA)n Simple_repeat Simple_repeat 1 61 -10 2168 118 0 0 chr15 64357823 64358112 -21337642 - AluSg SINE Alu -21 289 1 244 296 0 0 chr15 64358112 64358124 -21337630 + (TA)n Simple_repeat Simple_repeat 60 71 0 230 252 117 53 chr15 64358125 64358331 -21337423 + L1ME4a LINE L1 5903 6121 0 1474 251 126 19 chr15 64359153 64359687 -21336067 + MLT1E LTR MaLR 3 593 0 2260 95 10 3 chr15 64359971 64360276 -21335478 + AluSc SINE Alu 1 307 -2 2334 100 3 0 chr15 64360420 64360719 -21335035 - AluY SINE Alu -11 300 1 2163 194 166 39 chr15 64361107 64361288 -21334466 + Charlie1a DNA MER1_type 67 223 -2538 2034 155 0 3 chr15 64361288 64361585 -21334169 + AluJb SINE Alu 1 296 -16 2163 194 166 39 chr15 64361585 64362154 -21333600 + Charlie1a DNA MER1_type 223 913 -542 1206 196 0 9 chr15 64362159 64362383 -21333371 + AluJb SINE Alu 87 308 -4 262 261 187 15 chr15 64362399 64362533 -21333221 + Charlie1a DNA MER1_type 1050 1206 -249 1445 168 90 4 chr15 64362857 64363125 -21332629 - AluJb SINE Alu -21 291 1 879 159 8 0 chr15 64363268 64363400 -21332354 + AluJb SINE Alu 1 133 -179 906 161 0 7 chr15 64364378 64364515 -21331239 + AluJb SINE Alu 121 256 -56 2037 142 0 14 chr15 64365042 64365338 -21330416 + AluJb SINE Alu 9 300 -12 219 354 25 13 chr15 64366066 64366145 -21329609 + MIR SINE MIR 20 99 -109 182 319 14 0 chr15 64366142 64366211 -21329543 - L2 LINE L2 -3 3310 3241 * 1546 161 98 32 chr15 64367259 64367544 -21328210 + AluJb SINE Alu 1 304 -8 1773 150 27 24 chr15 64367670 64367852 -21327902 - AluSx SINE Alu -17 295 110 3375 118 56 48 chr15 64367852 64368460 -21327294 - LTR18B LTR ERVL 0 614 2 1773 150 27 24 chr15 64368460 64368571 -21327183 - AluSx SINE Alu -202 110 1 283 167 0 0 chr15 64368664 64368712 -21327042 - L1ME LINE L1 -360 5761 5714 301 238 56 90 chr15 64368782 64368964 -21326790 + MIR3 SINE MIR 31 207 -1 431 92 0 0 chr15 64369193 64369258 -21326496 - Alu SINE Alu -7 305 241 930 345 62 24 chr15 64369280 64369937 -21325817 - HERV16 LTR ERVL -3466 1530 849 299 103 0 35 chr15 64370216 64370274 -21325480 + (TCTCC)n Simple_repeat Simple_repeat 3 58 0 1993 170 0 10 chr15 64370283 64370595 -21325159 - AluJb SINE Alu -3 309 1 203 162 0 0 chr15 64371731 64371768 -21323986 + (CCCTG)n Simple_repeat Simple_repeat 4 40 0 446 298 43 65 chr15 64371773 64372095 -21323659 - MLT1K LTR MaLR -6 582 268 1358 204 20 76 chr15 64372212 64372605 -21323149 - MLT1A2 LTR MaLR 0 374 4 2152 118 10 7 chr15 64373150 64373455 -21322299 - AluSc SINE Alu -3 306 1 2963 128 54 91 chr15 64373483 64374098 -21321656 - LTR14B LTR ERVK 0 608 17 2165 231 52 130 chr15 64374099 64375329 -21320425 + HAL1 LINE L1 1338 2471 -36 474 112 100 4 chr15 64375420 64375514 -21320240 + L1MA9 LINE L1 6045 6140 -160 776 151 0 48 chr15 64375514 64375532 -21320222 - AluJb SINE Alu 0 312 295 1364 135 65 0 chr15 64375532 64375762 -21319992 - L1MA5 LINE L1 -4 6296 6052 804 89 0 0 chr15 64375764 64375887 -21319867 + (TA)n Simple_repeat Simple_repeat 2 124 0 776 151 0 48 chr15 64375887 64376011 -21319743 - AluJb SINE Alu -18 294 174 615 148 168 13 chr15 64376011 64376160 -21319594 - L1MC4 LINE L1 -661 7381 7210 267 143 71 0 chr15 64376161 64376217 -21319537 - L1MC4 LINE L1 -880 7162 7103 195 333 17 0 chr15 64376684 64376744 -21319010 - MER5A DNA MER1_type -18 171 111 1273 164 44 105 chr15 64377029 64377069 -21318685 - LTR37A LTR ERV1 -42 384 343 2303 85 10 0 chr15 64377069 64377364 -21318390 - AluSx SINE Alu -14 298 1 1273 164 44 105 chr15 64377364 64377732 -21318022 - LTR37A LTR ERV1 -83 343 1 483 120 0 0 chr15 64378156 64378231 -21317523 - Alu SINE Alu 0 312 238 372 99 308 0 chr15 64378248 64378339 -21317415 - MER58 DNA MER1_type -2220 200 82 1578 152 0 42 chr15 64378349 64378613 -21317141 + AluJo SINE Alu 30 282 -30 1748 206 102 5 chr15 64378628 64379050 -21316704 + Cheshire DNA MER1_type 917 1379 -1041 2482 177 42 10 chr15 64379062 64379564 -21316190 - L1MB4 LINE L1 -1 6179 5662 243 231 0 51 chr15 64379571 64379649 -21316105 - L1MB4 LINE L1 -1617 4529 4456 * 11353 202 43 46 chr15 64379634 64380131 -21315623 - L1M3 LINE L1 -516 5903 5406 4447 151 58 91 chr15 64380131 64381239 -21314515 - MER11C LTR ERVK 0 1071 1 11353 202 43 46 chr15 64381239 64381731 -21314023 - L1M3 LINE L1 -1013 5406 4914 1544 153 62 101 chr15 64381731 64381775 -21313979 - MLT1B LTR MaLR 0 390 346 2140 136 3 0 chr15 64381775 64382076 -21313678 + AluSx SINE Alu 1 302 -10 1544 153 62 101 chr15 64382076 64382322 -21313432 - MLT1B LTR MaLR -44 346 118 2165 96 64 0 chr15 64382322 64382603 -21313151 - AluSq SINE Alu -14 299 1 1544 153 62 101 chr15 64382603 64382717 -21313037 - MLT1B LTR MaLR -272 118 1 11353 202 43 46 chr15 64382717 64383253 -21312501 - L1M3 LINE L1 -1505 4914 4378 1700 164 18 4 chr15 64383253 64383527 -21312227 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr15 64383530 64383550 -21312204 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11353 202 43 46 chr15 64383550 64384807 -21310947 - L1M3 LINE L1 -2043 4376 3116 2250 106 7 0 chr15 64384807 64385100 -21310654 + AluSx SINE Alu 1 295 -17 2011 162 3 3 chr15 64385109 64385418 -21310336 + AluJb SINE Alu 1 309 -3 11353 202 43 46 chr15 64385418 64385733 -21310021 - L1M3 LINE L1 -3311 3108 2793 1522 209 30 3 chr15 64385733 64386029 -21309725 + AluJo SINE Alu 1 304 -8 11353 202 43 46 chr15 64386029 64386639 -21309115 - L1M3 LINE L1 -3626 2793 2192 868 125 8 8 chr15 64386691 64386819 -21308935 - MLT1B LTR MaLR -1 389 262 1009 198 59 8 chr15 64386821 64387059 -21308695 - L1M3 LINE L1 -4794 1590 1341 220 133 0 22 chr15 64387072 64387117 -21308637 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4399 78 5 0 chr15 64387161 64387712 -21308042 + MER41A LTR ERV1 1 554 0 26 0 0 0 chr15 64387738 64387764 -21307990 + AT_rich Low_complexity Low_complexity 1 26 0 1782 161 18 7 chr15 64387979 64388265 -21307489 + MER21B LTR ERV1 1 289 -574 2746 233 44 9 chr15 64388280 64389024 -21306730 - L1MB4 LINE L1 -2136 4010 3241 2424 82 0 7 chr15 64390165 64390471 -21305283 - AluSc SINE Alu -5 304 1 1951 134 18 0 chr15 64390498 64390798 -21304956 + AluSx SINE Alu 1 305 0 451 237 76 107 chr15 64390817 64391210 -21304544 - L1ME4a LINE L1 -16 6105 5725 2034 141 7 0 chr15 64391528 64391819 -21303935 + AluJb SINE Alu 1 293 -19 1946 143 146 11 chr15 64392066 64392443 -21303311 - MSTA LTR MaLR 0 428 1 3086 224 52 40 chr15 64392505 64392681 -21303073 - MER21B LTR ERV1 -78 785 613 2388 95 0 3 chr15 64392681 64392986 -21302768 - AluSc SINE Alu -1 308 5 3086 224 52 40 chr15 64392986 64393585 -21302169 - MER21B LTR ERV1 -250 613 1 240 248 156 28 chr15 64393597 64393738 -21302016 - L1ME4a LINE L1 -1492 4654 4496 2692 35 0 13 chr15 64393742 64394053 -21301701 - AluY SINE Alu -4 307 1 4594 234 89 38 chr15 64394377 64394401 -21301353 - L1MC3 LINE L1 0 8065 8044 2242 119 0 3 chr15 64394401 64394704 -21301050 + AluSg SINE Alu 1 302 -8 4594 234 89 38 chr15 64394704 64397341 -21298413 - L1MC3 LINE L1 -21 8044 5544 2392 102 0 0 chr15 64397341 64397644 -21298110 - AluSx SINE Alu -9 303 1 4594 234 89 38 chr15 64397644 64398151 -21297603 - L1MC3 LINE L1 -2521 5544 5064 1962 163 0 0 chr15 64398151 64398452 -21297302 - AluJb SINE Alu -11 301 1 4594 234 89 38 chr15 64398452 64398584 -21297170 - L1MC3 LINE L1 -3001 5064 4940 1709 191 0 3 chr15 64398584 64398867 -21296887 - AluJo SINE Alu -30 282 1 4594 234 89 38 chr15 64398867 64398878 -21296876 - L1MC3 LINE L1 -3125 4940 4931 2482 80 0 3 chr15 64398878 64399190 -21296564 - AluY SINE Alu 0 311 1 4594 234 89 38 chr15 64399190 64399636 -21296118 - L1MC3 LINE L1 -3134 4931 4509 1661 110 0 4 chr15 64399636 64399863 -21295891 - AluSc SINE Alu -13 296 71 4594 234 89 38 chr15 64399863 64399920 -21295834 - L1MC3 LINE L1 -3556 4509 2532 2364 98 10 0 chr15 64399928 64400233 -21295521 - AluSp SINE Alu -5 308 1 795 138 0 39 chr15 64400237 64400367 -21295387 - FLAM_C SINE Alu -8 125 1 1074 179 71 4 chr15 64400367 64400607 -21295147 - L1MC3 LINE L1 -5119 1307 1052 2393 189 24 17 chr15 64400614 64401074 -21294680 - L1MC3 LINE L1 -5957 469 7 900 254 72 79 chr15 64401059 64401395 -21294359 - L1MC4a LINE L1 -1982 5826 5494 * 2111 113 0 0 chr15 64401395 64401669 -21294085 - AluSg SINE Alu -36 274 1 900 254 72 79 chr15 64401669 64401886 -21293868 - L1MC4a LINE L1 -2314 5494 5277 911 116 43 7 chr15 64402049 64402187 -21293567 + AluJb SINE Alu 154 296 -16 2272 104 3 13 chr15 64402278 64402587 -21293167 - AluSx SINE Alu -6 306 1 1296 218 106 18 chr15 64403367 64403698 -21292056 - MLT1F1 LTR MaLR -3 564 205 691 224 43 142 chr15 64403744 64404096 -21291658 + MLT1C LTR MaLR 51 367 -23 1564 121 0 0 chr15 64404103 64404310 -21291444 - AluSg/x SINE Alu -9 303 97 2212 98 10 3 chr15 64404467 64404763 -21290991 - AluSq SINE Alu -13 300 3 419 259 137 43 chr15 64404836 64405164 -21290590 - L1MEd LINE L1 -4867 1252 894 2523 68 0 3 chr15 64405218 64405527 -21290227 - AluY SINE Alu -3 308 1 1148 187 96 0 chr15 64406061 64406280 -21289474 - AluJo SINE Alu -7 305 66 26 0 0 0 chr15 64406321 64406347 -21289407 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr15 64407078 64407120 -21288634 + AT_rich Low_complexity Low_complexity 1 42 0 204 297 238 0 chr15 64408575 64408676 -21287078 + MIR SINE MIR 25 149 -113 491 235 17 9 chr15 64409395 64409510 -21286244 - LTR56 LTR ERV1 -329 116 1 232 304 118 0 chr15 64411903 64412038 -21283716 + L1M4 LINE L1 61 211 -6331 5629 208 158 47 chr15 64412344 64412672 -21283082 + L1M4 LINE L1 802 1092 -5552 207 0 0 0 chr15 64412672 64412695 -21283059 + (CA)n Simple_repeat Simple_repeat 2 24 0 5629 208 158 47 chr15 64412695 64412777 -21282977 + L1M4 LINE L1 1092 1164 -5480 2061 116 32 4 chr15 64412777 64413054 -21282700 + AluSx SINE Alu 1 285 -27 5629 208 158 47 chr15 64413054 64413285 -21282469 + L1M4 LINE L1 1164 1368 -5276 659 178 0 0 chr15 64413285 64413386 -21282368 + FLAM_A SINE Alu 23 123 -19 5629 208 158 47 chr15 64413386 64414477 -21281277 + L1M4 LINE L1 1368 2337 -4307 2068 90 12 0 chr15 64414477 64414733 -21281021 + AluSx SINE Alu 1 259 -53 5629 208 158 47 chr15 64414733 64415194 -21280560 + L1M4 LINE L1 2337 2746 -3898 2153 153 89 5 chr15 64415194 64415587 -21280167 + MSTB LTR MaLR 1 426 0 5629 208 158 47 chr15 64415587 64416511 -21279243 + L1M4 LINE L1 2746 4384 -2260 3769 207 87 33 chr15 64416555 64417025 -21278729 - L1ME LINE L1 -572 5986 5543 1453 168 66 35 chr15 64417025 64417311 -21278443 - AluJb SINE Alu -17 295 1 3769 207 87 33 chr15 64417311 64418326 -21277428 - L1ME LINE L1 -1015 5543 4414 1705 117 0 12 chr15 64418328 64418568 -21277186 - AluJb SINE Alu -22 290 54 558 275 141 36 chr15 64418576 64418852 -21276902 - L1ME LINE L1 -4681 1859 1555 436 203 91 12 chr15 64418905 64419065 -21276689 + L1MEc LINE L1 1692 1858 -4568 200 219 0 0 chr15 64419485 64419526 -21276228 - MIR SINE MIR -60 148 108 22 0 0 0 chr15 64419696 64419718 -21276036 + AT_rich Low_complexity Low_complexity 1 22 0 396 198 166 19 chr15 64419918 64420044 -21275710 - MIR SINE MIR -65 143 22 2978 79 54 5 chr15 64421766 64422147 -21273607 + MLT2A1 LTR ERVL 1 405 -39 441 0 0 0 chr15 64422147 64422196 -21273558 + (TG)n Simple_repeat Simple_repeat 2 50 0 2978 79 54 5 chr15 64422196 64422219 -21273535 + MLT2A1 LTR ERVL 405 425 -19 453 263 163 28 chr15 64423198 64423518 -21272236 - L2 LINE L2 -1 3312 2950 1246 163 32 47 chr15 64423590 64423867 -21271887 + L1MB8 LINE L1 5842 6114 -64 282 258 84 32 chr15 64423918 64424073 -21271681 - L2 LINE L2 -32 3281 3119 1767 137 4 32 chr15 64424124 64424401 -21271353 - AluJb SINE Alu -43 269 1 408 123 0 0 chr15 64424412 64424477 -21271277 + L1MB8 LINE L1 6114 6178 0 23 0 0 0 chr15 64425084 64425107 -21270647 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr15 64425323 64425357 -21270397 + AT_rich Low_complexity Low_complexity 1 34 0 335 313 96 21 chr15 64425631 64425871 -21269883 - L1M4 LINE L1 -3118 3028 2771 230 200 29 0 chr15 64425980 64426050 -21269704 + L1MB8 LINE L1 6095 6166 -12 1950 120 33 4 chr15 64426052 64426327 -21269427 - AluSg SINE Alu -17 293 11 1915 106 84 4 chr15 64429598 64429872 -21265882 - AluSg SINE Alu -14 296 1 727 186 0 23 chr15 64431715 64431844 -21263910 + FLAM_A SINE Alu 1 126 -7 239 135 0 0 chr15 64432894 64432931 -21262823 - MIR SINE MIR -62 146 110 1188 112 79 0 chr15 64433148 64433362 -21262392 + L1MA8 LINE L1 6060 6290 -1 2795 231 122 27 chr15 64433416 64435196 -21260558 + L1ME2 LINE L1 4215 6154 -10 396 223 122 20 chr15 64435442 64435590 -21260164 - MIR SINE MIR -69 193 31 976 315 136 15 chr15 64437409 64438254 -21257500 + L2 LINE L2 1886 2832 -482 303 214 77 17 chr15 64440461 64440578 -21255176 + L2 LINE L2 3073 3196 -117 288 317 63 36 chr15 64440773 64440994 -21254760 + L2 LINE L2 2328 2554 -760 322 292 67 25 chr15 64441877 64441997 -21253757 + LTR67 LTR ERVL 428 552 -5 301 244 0 110 chr15 64442249 64442300 -21253454 + MIR SINE MIR 57 112 -150 2002 126 7 3 chr15 64442300 64442594 -21253160 - AluJb SINE Alu -17 295 1 301 244 0 110 chr15 64442594 64442669 -21253085 + MIR SINE MIR 112 169 -93 2396 80 7 0 chr15 64442674 64442974 -21252780 - AluSp SINE Alu -11 302 1 559 270 50 40 chr15 64444321 64444543 -21251211 + MIR SINE MIR 28 251 -11 503 307 11 5 chr15 64446168 64446357 -21249397 + MIR SINE MIR 2 191 -71 1743 171 18 7 chr15 64446554 64446840 -21248914 - AluJo SINE Alu -8 304 16 234 186 102 0 chr15 64449002 64449061 -21246693 + L1MB7 LINE L1 6059 6123 -61 1046 161 6 0 chr15 64449061 64449222 -21246532 - AluJb SINE Alu -16 296 135 339 197 0 0 chr15 64449225 64449296 -21246458 + L1MB7 LINE L1 6114 6184 0 35 19 0 19 chr15 64449339 64449358 -21246396 + AT_rich Low_complexity Low_complexity 1 19 -33 2131 85 78 3 chr15 64449358 64449641 -21246113 + AluSc SINE Alu 1 304 -5 35 19 0 19 chr15 64449641 64449674 -21246080 + AT_rich Low_complexity Low_complexity 19 52 0 2155 112 0 7 chr15 64449889 64450183 -21245571 + AluSg SINE Alu 1 292 -18 305 276 26 26 chr15 64450202 64450318 -21245436 + MIR SINE MIR 141 256 -6 1860 170 0 10 chr15 64451370 64451670 -21244084 + AluJo SINE Alu 1 297 -15 1542 171 73 7 chr15 64452330 64452617 -21243137 + AluJo SINE Alu 1 306 -6 215 77 0 26 chr15 64453180 64453219 -21242535 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr15 64453611 64453631 -21242123 + (A)n Simple_repeat Simple_repeat 1 20 0 313 292 54 15 chr15 64453838 64453968 -21241786 + L2 LINE L2 3136 3270 -2 233 221 0 93 chr15 64454174 64454260 -21241494 + MIR SINE MIR 110 187 -75 599 248 65 65 chr15 64455175 64455389 -21240365 - MIR SINE MIR -36 226 13 274 253 30 30 chr15 64455755 64455854 -21239900 + MER92B LTR ERV1 516 614 -22 200 208 94 0 chr15 64456452 64456505 -21239249 + MIR SINE MIR 54 111 -151 302 239 68 17 chr15 64456627 64456744 -21239010 - L1ME4a LINE L1 -186 5935 5813 543 172 165 17 chr15 64456776 64456927 -21238827 + L1MB8 LINE L1 5407 5578 -591 1602 142 279 0 chr15 64456933 64457208 -21238546 + L1MB8 LINE L1 5668 5865 -313 1919 105 0 22 chr15 64457208 64457475 -21238279 + AluSq SINE Alu 1 261 -52 1602 142 279 0 chr15 64457475 64457558 -21238196 + L1MB8 LINE L1 5865 6126 -52 603 241 64 24 chr15 64457672 64457921 -21237833 - L1ME4a LINE L1 -154 5967 5709 1796 173 10 0 chr15 64458033 64458333 -21237421 + AluJb SINE Alu 1 303 -9 21 0 0 0 chr15 64458469 64458490 -21237264 + AT_rich Low_complexity Low_complexity 1 21 0 1691 116 99 45 chr15 64458501 64458793 -21236961 + AluSg SINE Alu 2 309 -1 385 215 86 49 chr15 64458926 64459089 -21236665 - L1ME4a LINE L1 -2385 5423 5255 312 330 48 45 chr15 64459104 64459458 -21236296 - L1ME4a LINE L1 -905 5241 4887 2381 86 0 13 chr15 64459494 64459807 -21235947 - AluSq SINE Alu -4 309 1 2059 85 92 0 chr15 64459843 64460115 -21235639 - AluSq SINE Alu -16 297 1 521 335 106 16 chr15 64460301 64460680 -21235074 - L2 LINE L2 -435 2879 2467 235 319 92 17 chr15 64460815 64460934 -21234820 + MIR3 SINE MIR 67 194 -14 271 289 35 34 chr15 64462987 64463130 -21232624 + MIR SINE MIR 33 172 -63 281 231 231 22 chr15 64464087 64464221 -21231533 - MER5B DNA MER1_type 0 178 17 2252 114 0 3 chr15 64465596 64465902 -21229852 - AluSx SINE Alu -7 305 1 1081 273 68 33 chr15 64466728 64466954 -21228800 - L1MEd LINE L1 -4579 1731 1515 2078 90 0 14 chr15 64466954 64467231 -21228523 - AluSc SINE Alu 0 309 37 1081 273 68 33 chr15 64467231 64467644 -21228110 - L1MEd LINE L1 -4795 1515 1038 408 339 49 33 chr15 64467729 64468095 -21227659 - L1MEd LINE L1 -5221 898 527 816 118 0 66 chr15 64468498 64468634 -21227120 - FLAM_C SINE Alu -6 127 1 29 0 0 0 chr15 64469058 64469087 -21226667 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr15 64469690 64469713 -21226041 + AT_rich Low_complexity Low_complexity 1 23 0 591 164 95 9 chr15 64470731 64470847 -21224907 - MER105 DNA DNA -27 177 52 237 200 22 0 chr15 64470851 64470896 -21224858 - Alu SINE Alu -13 286 241 1434 150 108 4 chr15 64470853 64471113 -21224641 - AluJo SINE Alu -25 287 1 887 178 7 7 chr15 64471132 64471278 -21224476 - MER58B DNA MER1_type -6 335 190 308 127 18 18 chr15 64471293 64471348 -21224406 - MER105 DNA DNA -149 55 1 1862 164 0 3 chr15 64472410 64472702 -21223052 - AluJb SINE Alu -21 291 1 1209 256 171 7 chr15 64472742 64473168 -21222586 - MLT1J LTR MaLR -8 503 8 301 341 132 34 chr15 64474613 64475185 -21220569 + L2 LINE L2 2607 3230 -42 328 372 28 0 chr15 64475205 64475385 -21220369 + L3 LINE CR1 383 567 -1010 293 363 83 45 chr15 64475686 64476108 -21219646 + L3 LINE CR1 862 1299 -278 215 245 208 9 chr15 64476443 64476549 -21219205 + L2 LINE L2 3186 3312 -1 245 321 101 19 chr15 64476954 64477113 -21218641 - MIR3 SINE MIR -17 191 20 2174 106 7 0 chr15 64477199 64477491 -21218263 + AluSx SINE Alu 7 300 -12 2114 129 3 3 chr15 64478582 64478876 -21216878 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 64479185 64479213 -21216541 + AT_rich Low_complexity Low_complexity 1 28 0 817 173 0 62 chr15 64479628 64479790 -21215964 - AluJb SINE Alu -15 297 146 1813 162 0 7 chr15 64480409 64480717 -21215037 + AluSx SINE Alu 1 306 0 202 316 61 82 chr15 64481237 64481433 -21214321 + MIR SINE MIR 68 259 -3 234 252 32 89 chr15 64481782 64481905 -21213849 - MIR SINE MIR -40 222 107 1578 206 0 3 chr15 64482251 64482538 -21213216 + AluJo SINE Alu 1 286 -26 1933 164 0 7 chr15 64483094 64483399 -21212355 - AluSx SINE Alu -9 303 1 334 305 61 0 chr15 64483429 64483560 -21212194 + L1ME LINE L1 5558 5696 -425 767 154 34 0 chr15 64483932 64484049 -21211705 + FRAM SINE Alu 31 151 -25 1456 140 121 0 chr15 64485065 64485180 -21210574 + AluJo SINE Alu 1 101 -211 319 21 42 0 chr15 64485180 64485228 -21210526 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 1456 140 121 0 chr15 64485228 64485377 -21210377 + AluJo SINE Alu 101 297 -15 1055 232 129 59 chr15 64485681 64486022 -21209732 + MLT1A1 LTR MaLR 1 365 0 2080 122 3 0 chr15 64486434 64486721 -21209033 - AluSx SINE Alu -24 288 1 22 80 0 0 chr15 64487081 64487131 -21208623 + AT_rich Low_complexity Low_complexity 1 50 0 238 281 90 56 chr15 64488541 64488829 -21206925 + HAL1 LINE L1 814 1111 -1396 2069 137 0 3 chr15 64488865 64489157 -21206597 + AluSc SINE Alu 11 301 -8 221 290 93 56 chr15 64489312 64489419 -21206335 + L2 LINE L2 3201 3311 -2 941 248 66 81 chr15 64489735 64490202 -21205552 + L1ME3A LINE L1 5614 6073 -97 2405 102 0 0 chr15 64490277 64490582 -21205172 - AluSp SINE Alu -7 306 2 406 226 205 57 chr15 64490658 64490941 -21204813 + L1M4 LINE L1 2947 3271 -2875 1064 194 42 28 chr15 64491147 64491363 -21204391 - MER20 DNA MER1_type 0 219 1 235 172 17 35 chr15 64491545 64491603 -21204151 + L1M4 LINE L1 3805 3861 -2285 313 329 66 66 chr15 64491730 64492171 -21203583 + HAL1 LINE L1 23 463 -2044 1573 164 23 49 chr15 64492312 64492669 -21203085 - AluJb SINE Alu 0 312 1 2224 111 0 0 chr15 64492738 64493026 -21202728 + AluSp SINE Alu 2 289 -24 225 257 104 30 chr15 64493053 64493255 -21202499 + HAL1 LINE L1 854 1070 -1437 606 234 102 98 chr15 64493273 64493795 -21201959 + MLT1F LTR MaLR 19 542 0 983 214 89 77 chr15 64493800 64494305 -21201449 + HAL1 LINE L1 1120 1630 -877 862 220 14 51 chr15 64494334 64494548 -21201206 - MIR SINE MIR -29 233 28 419 283 148 21 chr15 64494565 64494802 -21200952 + HAL1 LINE L1 1637 1903 -604 21 0 0 0 chr15 64494831 64494852 -21200902 + AT_rich Low_complexity Low_complexity 1 21 0 272 272 11 22 chr15 64494987 64495079 -21200675 + HAL1 LINE L1 2221 2311 -196 273 292 197 0 chr15 64496075 64496212 -21199542 + MIR SINE MIR 81 244 -18 3390 81 24 35 chr15 64496773 64496805 -21198949 + LTR15 LTR ERV1 1 32 -461 7302 44 42 5 chr15 64496805 64497748 -21198006 + L1PA5 LINE L1 5179 6153 -1 3390 81 24 35 chr15 64497748 64498207 -21197547 + LTR15 LTR ERV1 32 487 -6 2132 131 0 16 chr15 64498271 64498577 -21197177 + AluSq SINE Alu 1 301 -12 309 109 0 0 chr15 64498577 64498623 -21197131 + (GA)n Simple_repeat Simple_repeat 1 46 0 309 287 48 53 chr15 64499415 64499603 -21196151 - L1MC4a LINE L1 -1883 5925 5739 273 245 71 20 chr15 64499611 64499709 -21196045 - L2 LINE L2 -1309 2005 1903 799 174 9 0 chr15 64500216 64500331 -21195423 - FLAM_C SINE Alu -26 117 2 21 0 0 0 chr15 64500646 64500667 -21195087 + AT_rich Low_complexity Low_complexity 1 21 0 224 197 30 45 chr15 64500739 64500805 -21194949 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 1056 169 0 6 chr15 64500805 64500982 -21194772 - AluJb SINE Alu -5 307 132 404 183 0 0 chr15 64500985 64501045 -21194709 - AluS SINE Alu -257 61 2 258 247 75 11 chr15 64501137 64501230 -21194524 - L1P LINE L1 -1656 4490 4392 444 226 46 75 chr15 64501458 64501470 -21194284 + L1ME4a LINE L1 5887 5898 -223 2373 97 0 3 chr15 64501470 64501778 -21193976 + AluY SINE Alu 1 307 -4 444 226 46 75 chr15 64501778 64502004 -21193750 + L1ME4a LINE L1 5898 6118 -3 1694 242 121 20 chr15 64502820 64503357 -21192397 + MLT1E LTR MaLR 3 593 0 1960 118 40 0 chr15 64503718 64504015 -21191739 + AluSc SINE Alu 1 309 0 2255 97 3 7 chr15 64504161 64504461 -21191293 - AluY SINE Alu -9 302 4 207 0 0 0 chr15 64504581 64504604 -21191150 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2378 190 172 41 chr15 64504851 64505037 -21190717 + Charlie1a DNA MER1_type 62 222 -2539 1980 155 0 3 chr15 64505037 64505334 -21190420 + AluJb SINE Alu 1 296 -16 2378 190 172 41 chr15 64505334 64505901 -21189853 + Charlie1a DNA MER1_type 222 914 -541 1138 195 0 9 chr15 64505905 64506126 -21189628 + AluJb SINE Alu 87 305 -7 859 203 239 15 chr15 64506150 64506476 -21189278 + Charlie1a DNA MER1_type 1057 1455 0 2124 139 0 0 chr15 64506952 64507246 -21188508 + AluSx SINE Alu 1 294 -18 306 0 0 0 chr15 64507379 64507413 -21188341 + (CA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr15 64507412 64507441 -21188313 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 2047 132 3 7 chr15 64508601 64508904 -21186850 + AluSg SINE Alu 1 302 -8 423 0 0 0 chr15 64509066 64509113 -21186641 + (CA)n Simple_repeat Simple_repeat 2 48 0 1977 87 14 38 chr15 64510249 64510538 -21185216 + AluSx SINE Alu 3 284 -28 1136 126 6 0 chr15 64510538 64510697 -21185057 - AluSq SINE Alu -153 160 1 378 0 0 0 chr15 64511803 64511845 -21183909 + (TG)n Simple_repeat Simple_repeat 2 43 0 347 278 124 11 chr15 64512140 64512256 -21183498 + MIR SINE MIR 1 130 -78 189 0 0 0 chr15 64512719 64512740 -21183014 + (T)n Simple_repeat Simple_repeat 1 21 0 313 230 29 149 chr15 64513634 64513808 -21181946 + MIR SINE MIR 47 199 -63 1323 161 12 56 chr15 64513808 64513890 -21181864 + AluJo SINE Alu 45 129 -196 2384 91 3 0 chr15 64513890 64514198 -21181556 - AluY SINE Alu -2 309 1 1323 161 12 56 chr15 64514198 64514407 -21181347 + AluJo SINE Alu 129 325 0 603 251 86 56 chr15 64514780 64515060 -21180694 - L1ME LINE L1 -390 5780 5483 282 278 51 11 chr15 64515066 64515194 -21180560 + L1ME3A LINE L1 5810 5950 -216 1632 166 0 0 chr15 64515194 64515441 -21180313 + AluJo SINE Alu 5 251 -61 282 278 51 11 chr15 64515441 64515455 -21180299 + L1ME3A LINE L1 5950 5962 -204 2427 73 0 10 chr15 64515490 64515792 -21179962 + AluY SINE Alu 1 299 -12 2067 146 0 0 chr15 64515804 64516105 -21179649 + AluSx SINE Alu 1 301 -11 480 254 39 42 chr15 64516190 64516383 -21179371 + L1ME LINE L1 5509 5702 -460 21 57 0 0 chr15 64516652 64516687 -21179067 + AT_rich Low_complexity Low_complexity 1 35 0 655 152 39 5 chr15 64516741 64516882 -21178872 - L1MB7 LINE L1 -221 5963 5846 1776 189 9 15 chr15 64516888 64517227 -21178527 - LTR2B LTR ERV1 0 490 154 2290 106 0 0 chr15 64517234 64517526 -21178228 - AluY SINE Alu -19 292 1 229 354 25 13 chr15 64517814 64517893 -21177861 + MIR SINE MIR 20 99 -109 188 313 16 0 chr15 64517895 64517959 -21177795 - L2 LINE L2 -8 3305 3241 190 250 0 0 chr15 64518073 64518121 -21177633 + MIR SINE MIR 157 204 -58 1542 183 50 30 chr15 64519005 64519305 -21176449 + AluJb SINE Alu 1 306 -6 1520 161 32 25 chr15 64519430 64519622 -21176132 - AluSx SINE Alu 0 306 110 3842 119 46 47 chr15 64519622 64520236 -21175518 - LTR18B LTR ERVL 0 614 2 1520 161 32 25 chr15 64520236 64520347 -21175407 - AluSx SINE Alu -196 110 1 287 167 0 0 chr15 64520440 64520488 -21175266 - L1ME LINE L1 -360 5761 5714 341 214 56 82 chr15 64520560 64520743 -21175011 + MIR3 SINE MIR 18 207 -1 318 87 0 0 chr15 64521227 64521273 -21174481 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1937 166 3 0 chr15 64521308 64521610 -21174144 - AluJb SINE Alu -9 303 1 183 114 0 0 chr15 64522745 64522780 -21172974 + (CCCTG)n Simple_repeat Simple_repeat 4 38 0 505 295 40 62 chr15 64522785 64523107 -21172647 - MLT1K LTR MaLR -6 582 268 1301 206 64 67 chr15 64523224 64523613 -21172141 - MLT1B LTR MaLR 0 390 3 2802 259 55 51 chr15 64524128 64525159 -21170595 + HAL1 LINE L1 1304 2342 -165 2159 109 13 0 chr15 64525159 64525463 -21170291 + AluSp SINE Alu 3 310 -3 2802 259 55 51 chr15 64525463 64525594 -21170160 + HAL1 LINE L1 2342 2471 -36 495 154 58 2 chr15 64525678 64525778 -21169976 + L1MA8 LINE L1 6046 6139 -152 2178 110 0 0 chr15 64525782 64526091 -21169663 - AluSg1 SINE Alu 0 309 1 2029 124 0 7 chr15 64526092 64526399 -21169355 - AluSc SINE Alu -4 305 1 1634 122 42 45 chr15 64526407 64526653 -21169101 - L1MA5 LINE L1 -2 6298 6052 1578 167 47 20 chr15 64526653 64526952 -21168802 - AluJo SINE Alu -5 307 1 1634 122 42 45 chr15 64526952 64527040 -21168714 - L1MA5 LINE L1 -248 6052 5965 861 161 39 11 chr15 64527040 64527217 -21168537 + L1MA9 LINE L1 6123 6307 -5 446 300 50 44 chr15 64527250 64527430 -21168324 - MIR3 SINE MIR -17 191 11 209 269 185 28 chr15 64528108 64528216 -21167538 + MIR SINE MIR 18 142 -66 182 133 33 0 chr15 64528409 64528439 -21167315 + MIR SINE MIR 115 145 -63 597 209 30 30 chr15 64528858 64528992 -21166762 + MER94 DNA DNA 1 134 0 2077 109 0 0 chr15 64529316 64529620 -21166134 - AluSx SINE Alu -8 304 1 2097 107 0 7 chr15 64530171 64530462 -21165292 - AluSx SINE Alu -23 289 1 1615 205 25 16 chr15 64530512 64530531 -21165223 - L1ME3 LINE L1 0 6162 6145 1253 155 46 143 chr15 64530531 64530945 -21164809 + MLT1A2 LTR MaLR 1 374 0 1615 205 25 16 chr15 64530945 64531291 -21164463 - L1ME3 LINE L1 -17 6145 5794 2266 96 0 0 chr15 64531311 64531613 -21164141 - AluSg SINE Alu -8 302 1 727 255 115 20 chr15 64531971 64532171 -21163583 - MIR SINE MIR -43 219 1 2129 95 16 3 chr15 64532722 64533026 -21162728 - AluSc SINE Alu -1 308 1 424 227 0 0 chr15 64533179 64533267 -21162487 - AluJo SINE Alu -95 217 130 198 247 0 0 chr15 64533295 64533372 -21162382 + (CA)n Simple_repeat Simple_repeat 2 78 0 223 275 0 14 chr15 64533373 64533442 -21162312 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 1386 240 51 75 chr15 64533668 64534176 -21161578 + MER77 LTR ERV1 54 549 -56 522 246 27 0 chr15 64534964 64535074 -21160680 + MLT1A2 LTR MaLR 1 113 -261 22296 122 41 15 chr15 64535074 64538568 -21157186 + L1M1 LINE L1 13 3598 -3967 309 254 227 0 chr15 64539989 64540099 -21155655 + L1M4 LINE L1 5197 5331 -815 1564 102 107 8 chr15 64540099 64540343 -21155411 + AluSx SINE Alu 1 268 -44 851 131 0 0 chr15 64540646 64540768 -21154986 + FLAM_C SINE Alu 2 123 -10 261 128 0 0 chr15 64540795 64540842 -21154912 + (TA)n Simple_repeat Simple_repeat 2 48 0 290 343 10 10 chr15 64541179 64541278 -21154476 - MIR3 SINE MIR -25 183 85 325 284 43 0 chr15 64541907 64542023 -21153731 - MIR3 SINE MIR -29 179 59 828 129 8 0 chr15 64542238 64542370 -21153384 - AluJo SINE Alu -177 135 3 2234 80 10 0 chr15 64542476 64542777 -21152977 - AluSp SINE Alu -9 304 1 483 215 190 12 chr15 64542913 64543076 -21152678 - L1ME3 LINE L1 -1 6163 5972 2216 82 0 0 chr15 64543104 64543395 -21152359 - AluSx SINE Alu -1 311 21 1901 88 99 0 chr15 64543895 64544168 -21151586 - AluSx SINE Alu -12 300 1 2245 110 0 0 chr15 64545252 64545562 -21150192 - AluSg SINE Alu 0 310 1 204 272 56 64 chr15 64545872 64545997 -21149757 - L2 LINE L2 -173 3099 2976 268 351 35 0 chr15 64546347 64546461 -21149293 - MIR SINE MIR -4 258 141 290 222 256 8 chr15 64546817 64546934 -21148820 - MIR SINE MIR -81 181 36 2113 112 7 0 chr15 64548030 64548334 -21147420 - AluSx SINE Alu -6 306 1 211 185 0 31 chr15 64548649 64548714 -21147040 + CT-rich Low_complexity Low_complexity 6 68 0 370 215 122 37 chr15 64548728 64548773 -21146981 + MER5A DNA MER1_type 74 114 -75 2224 94 7 10 chr15 64548773 64549080 -21146674 + AluSx SINE Alu 1 306 -6 370 215 122 37 chr15 64549080 64549141 -21146613 + MER5A DNA MER1_type 114 189 0 574 186 137 50 chr15 64549162 64549323 -21146431 - MER5B DNA MER1_type -3 175 1 459 234 195 7 chr15 64549335 64549489 -21146265 + MER5A DNA MER1_type 6 188 -1 290 58 0 81 chr15 64549773 64549859 -21145895 + (TA)n Simple_repeat Simple_repeat 1 79 0 762 224 0 7 chr15 64549865 64550012 -21145742 - FRAM SINE Alu -30 146 1 235 214 18 0 chr15 64550761 64550817 -21144937 + L1P LINE L1 4950 5006 -1140 2193 100 7 0 chr15 64551001 64551311 -21144443 - AluSx SINE Alu 0 312 1 336 270 132 48 chr15 64551346 64551535 -21144219 + L1 LINE L1 5192 5396 -750 1866 90 61 18 chr15 64551536 64551815 -21143939 + AluSg SINE Alu 1 291 -19 874 172 17 17 chr15 64551828 64551990 -21143764 + AluJb SINE Alu 132 296 -16 2026 101 34 0 chr15 64551990 64552287 -21143467 + AluSx SINE Alu 1 307 -5 874 172 17 17 chr15 64552287 64552304 -21143450 + AluJb SINE Alu 295 311 -1 21 0 0 0 chr15 64552434 64552455 -21143299 + AT_rich Low_complexity Low_complexity 1 21 0 2267 74 0 3 chr15 64552976 64553273 -21142481 + AluY SINE Alu 1 296 -15 318 268 49 127 chr15 64553435 64553640 -21142114 - L1 LINE L1 -1074 5072 4884 2062 91 45 0 chr15 64553845 64554131 -21141623 - AluSx SINE Alu -13 299 1 2039 118 0 23 chr15 64554198 64554503 -21141251 - AluSg SINE Alu -12 298 1 1721 169 0 3 chr15 64554505 64554795 -21140959 - AluJo SINE Alu -3 309 21 375 258 45 66 chr15 64554840 64555084 -21140670 - HAL1b LINE L1 -426 922 684 963 127 67 0 chr15 64555158 64555308 -21140446 - AluSg/x SINE Alu -17 295 136 241 213 16 49 chr15 64555312 64555373 -21140381 - HAL1b LINE L1 -919 429 371 2131 101 0 7 chr15 64555481 64555777 -21139977 - AluSg SINE Alu -16 294 1 1629 188 3 0 chr15 64555855 64556153 -21139601 - AluJo SINE Alu -13 299 1 1936 120 0 10 chr15 64556488 64556779 -21138975 + AluSx SINE Alu 14 301 -11 2053 129 3 0 chr15 64557364 64557666 -21138088 + AluSp SINE Alu 1 303 -10 2130 87 17 0 chr15 64557677 64557965 -21137789 + AluSx SINE Alu 1 293 -19 1671 188 0 10 chr15 64558178 64558487 -21137267 + AluJb SINE Alu 1 306 -6 2125 105 0 0 chr15 64558662 64558956 -21136798 + AluSx SINE Alu 4 297 -15 384 146 0 49 chr15 64559085 64559167 -21136587 - AluS SINE Alu -4 297 220 694 168 81 29 chr15 64559531 64559704 -21136050 - L1MA8 LINE L1 -42 6249 6068 203 343 25 75 chr15 64560102 64560260 -21135494 + L2 LINE L2 2620 2767 -547 2255 49 7 26 chr15 64560260 64560567 -21135187 - AluY SINE Alu -10 301 1 203 343 25 75 chr15 64560567 64560609 -21135145 + L2 LINE L2 2767 2810 -504 281 274 14 14 chr15 64561433 64561506 -21134248 + L2 LINE L2 3186 3258 -14 410 323 30 24 chr15 64561587 64561754 -21134000 + MER5B DNA MER1_type 3 170 -8 252 291 165 25 chr15 64562161 64562319 -21133435 - MIR SINE MIR -7 255 76 2636 10 0 3 chr15 64564246 64564542 -21131212 + L1PA3 LINE L1 5861 6155 0 1932 9 0 5 chr15 64566332 64566554 -21129200 - L1PA2 LINE L1 0 6155 5935 552 202 54 142 chr15 64566655 64566835 -21128919 - L1MC4 LINE L1 0 8042 7906 1636 156 0 56 chr15 64566835 64567156 -21128598 - AluJb SINE Alu -9 303 1 552 202 54 142 chr15 64567156 64567327 -21128427 - L1MC4 LINE L1 -136 7906 7722 2832 128 87 114 chr15 64567490 64567592 -21128162 + L1M4c LINE L1 1377 1480 -4904 2194 108 0 19 chr15 64567592 64567908 -21127846 + AluSx SINE Alu 3 312 0 2832 128 87 114 chr15 64567908 64568487 -21127267 + L1M4c LINE L1 1480 2039 -4345 1068 181 257 11 chr15 64568487 64568763 -21126991 + MER2 DNA MER2_type 1 344 -1 1847 116 9 18 chr15 64568765 64569092 -21126662 + L1M4c LINE L1 2039 2362 -4022 422 287 123 73 chr15 64570222 64570630 -21125124 - L1M4 LINE L1 -2993 3153 2726 1040 99 0 7 chr15 64571140 64571282 -21124472 + AluSq/x SINE Alu 1 141 -172 1192 100 89 5 chr15 64571382 64571572 -21124182 + L1PA11 LINE L1 5968 6173 -1 5777 192 48 25 chr15 64571593 64573327 -21122427 + L1M3 LINE L1 3999 5775 -408 555 195 86 47 chr15 64573327 64573455 -21122299 + FLAM_A SINE Alu 1 133 -9 403 278 179 19 chr15 64573844 64574056 -21121698 - MIR SINE MIR 0 262 17 344 348 120 0 chr15 64574057 64574215 -21121539 + MER91A DNA MER1_type 1 177 -19 6424 131 93 6 chr15 64574721 64575336 -21120418 + L1M4c LINE L1 22 582 -5802 198 0 0 0 chr15 64575336 64575358 -21120396 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6424 131 93 6 chr15 64575358 64575853 -21119901 + L1M4c LINE L1 582 1228 -5156 270 81 0 0 chr15 64576045 64576082 -21119672 + (T)n Simple_repeat Simple_repeat 1 37 0 614 78 13 0 chr15 64576097 64576174 -21119580 + AluS SINE Alu 2 79 -234 833 157 0 0 chr15 64576174 64576289 -21119465 - FLAM_A SINE Alu -18 115 1 4675 150 40 38 chr15 64576308 64577010 -21118744 - L1MA7 LINE L1 -99 6192 5493 1821 178 0 10 chr15 64577010 64577303 -21118451 - AluJb SINE Alu -18 294 5 2343 106 3 0 chr15 64577307 64577610 -21118144 - AluSp SINE Alu -9 304 1 4675 150 40 38 chr15 64577610 64577982 -21117772 - L1MA7 LINE L1 -800 5491 5117 734 264 24 5 chr15 64577982 64578194 -21117560 + L1M4 LINE L1 5079 5294 -852 234 0 0 0 chr15 64578195 64578221 -21117533 + (CA)n Simple_repeat Simple_repeat 2 27 0 373 176 221 7 chr15 64578914 64579050 -21116704 + L1ME3A LINE L1 5911 6075 -95 2260 100 3 0 chr15 64579071 64579370 -21116384 + AluSp SINE Alu 1 300 -13 2487 71 0 3 chr15 64580925 64581235 -21114519 + AluSq SINE Alu 1 309 -4 846 153 0 24 chr15 64581582 64581706 -21114048 + FLAM_C SINE Alu 1 121 -12 379 306 64 25 chr15 64581841 64582076 -21113678 - HAL1b LINE L1 -437 911 668 607 305 86 20 chr15 64582077 64582379 -21113375 - HAL1b LINE L1 -703 645 324 2385 84 3 0 chr15 64582548 64582846 -21112908 - AluY SINE Alu -12 299 1 25 0 0 0 chr15 64584062 64584087 -21111667 + AT_rich Low_complexity Low_complexity 1 25 0 1731 158 61 10 chr15 64584149 64584446 -21111308 - AluJo SINE Alu 0 312 1 332 239 22 22 chr15 64584707 64584799 -21110955 - MIR SINE MIR 0 262 171 2104 107 0 4 chr15 64585671 64585979 -21109775 - AluSg SINE Alu 0 307 1 199 206 95 16 chr15 64586111 64586174 -21109580 - MIR SINE MIR -13 249 182 1095 307 59 36 chr15 64586605 64587078 -21108676 + L2 LINE L2 2494 2977 -337 379 330 0 0 chr15 64587199 64587299 -21108455 + L2 LINE L2 3214 3313 0 343 303 127 18 chr15 64587383 64587548 -21108206 + MIR SINE MIR 20 202 -60 2060 110 65 0 chr15 64588039 64588331 -21107423 - AluSx SINE Alu -1 311 1 686 270 48 28 chr15 64588482 64588734 -21107020 - L2 LINE L2 -3 3310 3054 38715 61 11 2 chr15 64588938 64594177 -21101577 - L1P2 LINE L1 -609 5545 4 5471 214 63 48 chr15 64594182 64594531 -21101223 - L1M4 LINE L1 -2133 4013 3671 363 197 0 0 chr15 64594531 64594592 -21101162 - Alu SINE Alu -7 295 235 1420 201 10 37 chr15 64594594 64594893 -21100861 - AluJo SINE Alu -21 291 1 5471 214 63 48 chr15 64594893 64596235 -21099519 - L1M4 LINE L1 -2475 3671 2233 1107 96 0 0 chr15 64596338 64596473 -21099281 - AluSq/x SINE Alu -178 135 1 282 248 16 88 chr15 64597135 64597260 -21098494 - HAL1b LINE L1 0 1348 1233 409 166 117 42 chr15 64598333 64598455 -21097299 - MIR SINE MIR -69 139 58 328 271 56 9 chr15 64598752 64598859 -21096895 + MIR SINE MIR 34 145 -63 567 353 49 70 chr15 64599002 64599470 -21096284 - L2 LINE L2 0 3272 2815 233 346 34 58 chr15 64599769 64599977 -21095777 + L3 LINE CR1 1186 1388 -189 279 169 119 141 chr15 64601455 64601540 -21094214 + L1ME4a LINE L1 5529 5614 -507 1858 165 0 3 chr15 64601540 64601843 -21093911 + AluJo SINE Alu 1 302 -10 279 169 119 141 chr15 64601843 64601934 -21093820 + L1ME4a LINE L1 5614 5701 -420 361 241 254 51 chr15 64601974 64602344 -21093410 + L1ME4a LINE L1 5677 6121 0 429 234 103 0 chr15 64603106 64603251 -21092503 + MER112 DNA MER1_type 12 171 -89 606 148 130 9 chr15 64603261 64603376 -21092378 - FRAM SINE Alu -1 175 47 1297 176 144 45 chr15 64603385 64603921 -21091833 + MLT1G3 LTR MaLR 1 590 0 234 274 137 0 chr15 64603921 64603993 -21091761 + MER112 DNA MER1_type 179 260 0 507 332 110 38 chr15 64605732 64606024 -21089730 - L2 LINE L2 -36 3236 2924 320 305 185 45 chr15 64606200 64607193 -21088561 + L2 LINE L2 596 1727 -1587 2132 100 0 42 chr15 64607205 64607514 -21088240 + AluSx SINE Alu 1 296 -16 3328 189 66 43 chr15 64607909 64608432 -21087322 + L1MC4 LINE L1 7161 7713 -329 1965 137 90 29 chr15 64608432 64608482 -21087272 - MLT1A1 LTR MaLR 0 365 319 1609 161 0 58 chr15 64608482 64608793 -21086961 - AluJo SINE Alu -19 293 1 1965 137 90 29 chr15 64608793 64609086 -21086668 - MLT1A1 LTR MaLR -46 319 1 3328 189 66 43 chr15 64609086 64609424 -21086330 + L1MC4 LINE L1 7713 8042 0 2052 129 26 0 chr15 64609428 64609731 -21086023 - AluSx SINE Alu -1 311 1 258 56 0 0 chr15 64610082 64610118 -21085636 + (A)n Simple_repeat Simple_repeat 1 36 0 2083 133 7 7 chr15 64610169 64610471 -21085283 + AluSq SINE Alu 1 302 -11 639 177 40 32 chr15 64610501 64610625 -21085129 + FLAM_A SINE Alu 1 125 -8 336 274 151 18 chr15 64610629 64610848 -21084906 - L1MC5 LINE L1 -78 7883 7636 331 219 37 98 chr15 64611397 64611561 -21084193 + L1MC4a LINE L1 5629 5782 -339 180 222 0 28 chr15 64611591 64611627 -21084127 + MER5C DNA MER1_type 5 39 -285 449 350 81 15 chr15 64611815 64612012 -21083742 + L2 LINE L2 2518 2727 -587 2554 84 0 0 chr15 64612150 64612460 -21083294 - AluSq SINE Alu -3 310 1 977 307 90 45 chr15 64612497 64612778 -21082976 + L1MB7 LINE L1 4037 4304 -1842 2739 13 16 0 chr15 64612778 64613082 -21082672 - AluYb8 SINE Alu -9 309 1 977 307 90 45 chr15 64613082 64613876 -21081878 + L1MB7 LINE L1 4304 5161 -985 1876 159 3 22 chr15 64613893 64614208 -21081546 - AluSx SINE Alu -3 309 1 499 253 32 38 chr15 64614252 64614563 -21081191 + L1MB7 LINE L1 5256 5603 -2205 1387 127 131 4 chr15 64614583 64614819 -21080935 + AluJb SINE Alu 29 294 -18 1619 148 75 89 chr15 64614850 64615290 -21080464 + L1MB7 LINE L1 5732 6165 -19 381 286 9 0 chr15 64615296 64615408 -21080346 + L1MC4a LINE L1 5816 5928 -1880 611 156 72 78 chr15 64615619 64615799 -21079955 + L1MC5 LINE L1 7017 7195 -766 1010 148 0 44 chr15 64615815 64615997 -21079757 + FRAM SINE Alu 1 174 -2 1706 224 52 33 chr15 64616034 64616493 -21079261 + MLT1F LTR MaLR 60 527 -15 430 203 89 8 chr15 64616707 64616830 -21078924 - MIR SINE MIR -65 197 65 8189 26 0 3 chr15 64617417 64618534 -21077220 - L1PA3 LINE L1 -3 6152 5037 404 294 22 15 chr15 64618662 64618798 -21076956 - MIR SINE MIR -112 150 14 2389 232 63 16 chr15 64619850 64620457 -21075297 - L1ME3A LINE L1 -8 6162 5528 225 0 0 0 chr15 64620981 64621006 -21074748 + (CA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr15 64622309 64622333 -21073421 + AT_rich Low_complexity Low_complexity 1 24 0 787 257 99 9 chr15 64622333 64622555 -21073199 - MIR SINE MIR 0 262 21 641 198 80 12 chr15 64622564 64622726 -21073028 - L1ME3A LINE L1 0 6170 5998 1781 136 7 14 chr15 64623438 64623732 -21072022 - AluSx SINE Alu -20 292 1 2586 51 0 0 chr15 64624468 64624779 -21070975 - AluY SINE Alu 0 311 1 22 115 0 0 chr15 64624868 64624981 -21070773 + AT_rich Low_complexity Low_complexity 1 113 0 2630 36 0 0 chr15 64625161 64625468 -21070286 - AluY SINE Alu -4 307 1 24 0 0 0 chr15 64626372 64626396 -21069358 + AT_rich Low_complexity Low_complexity 1 24 0 1675 157 0 33 chr15 64626396 64626695 -21069059 - AluSx SINE Alu -23 289 1 21 36 0 0 chr15 64629246 64629274 -21066480 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chr15 64629427 64629513 -21066241 + L2 LINE L2 3225 3310 -3 233 229 16 0 chr15 64679935 64679996 -21015758 + MIR SINE MIR 70 131 -77 1875 133 10 7 chr15 64682104 64682398 -21013356 - AluSx SINE Alu -17 295 1 26 30 0 0 chr15 64682406 64682439 -21013315 + AT_rich Low_complexity Low_complexity 1 33 0 2842 214 30 27 chr15 64682447 64683046 -21012708 - L1ME3A LINE L1 -235 5931 5327 1843 137 0 11 chr15 64683046 64683372 -21012382 - AluSx SINE Alu 0 323 1 2842 214 30 27 chr15 64683372 64683408 -21012346 - L1ME3A LINE L1 -839 5327 5293 1613 102 0 0 chr15 64683438 64683654 -21012100 - AluSc SINE Alu -93 216 1 333 0 0 0 chr15 64683681 64683718 -21012036 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 255 154 19 0 chr15 64683768 64683820 -21011934 - Alu SINE Alu -2 300 248 2451 181 57 32 chr15 64683921 64684646 -21011108 + L1MB3 LINE L1 5033 5775 -408 519 195 86 47 chr15 64684646 64684774 -21010980 + FLAM_A SINE Alu 1 133 -9 2141 145 20 15 chr15 64684782 64685181 -21010573 + L1MB3 LINE L1 5773 6173 -10 2285 102 0 3 chr15 64685226 64685539 -21010215 - AluSx SINE Alu 0 312 1 674 277 30 38 chr15 64687534 64687769 -21007985 + L2 LINE L2 3078 3310 -3 1981 106 65 0 chr15 64687920 64688213 -21007541 + AluSx SINE Alu 1 312 0 368 297 127 18 chr15 64688704 64688869 -21006885 - MIR SINE MIR -60 202 20 390 330 0 0 chr15 64688952 64689052 -21006702 - L2 LINE L2 0 3313 3214 1104 306 57 36 chr15 64689173 64689647 -21006107 - L2 LINE L2 -337 2977 2494 210 206 95 16 chr15 64690077 64690140 -21005614 + MIR SINE MIR 182 249 -13 459 101 0 0 chr15 64690261 64690330 -21005424 + Alu SINE Alu 227 295 -14 270 81 0 0 chr15 64690485 64690522 -21005232 + (T)n Simple_repeat Simple_repeat 1 37 0 552 76 13 25 chr15 64690537 64690616 -21005138 + AluS SINE Alu 2 79 -234 792 157 0 0 chr15 64690616 64690731 -21005023 - FLAM_A SINE Alu -18 115 1 4609 149 40 34 chr15 64690750 64691439 -21004315 - L1MA7 LINE L1 -99 6192 5508 1722 186 0 10 chr15 64691439 64691745 -21004009 - AluJb SINE Alu -5 307 5 2242 95 3 0 chr15 64691749 64692044 -21003710 - AluSp SINE Alu -8 305 10 4609 149 40 34 chr15 64692044 64692425 -21003329 - L1MA7 LINE L1 -785 5506 5117 714 264 24 5 chr15 64692425 64692637 -21003117 + L1M4 LINE L1 5079 5294 -852 342 0 0 0 chr15 64692638 64692676 -21003078 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 122 41 0 chr15 64693371 64693420 -21002334 + L1ME3A LINE L1 5911 5961 -209 205 241 121 0 chr15 64693823 64693881 -21001873 - MIR SINE MIR -48 214 150 364 371 66 14 chr15 64694186 64694472 -21001282 + L1M4 LINE L1 4075 4375 -1771 417 286 74 23 chr15 64695121 64695296 -21000458 - MIR SINE MIR -70 192 9 330 247 96 0 chr15 64695853 64695926 -20999828 - L2 LINE L2 -59 3213 3134 248 279 0 16 chr15 64696173 64696234 -20999520 + MLT1K LTR MaLR 189 248 -340 406 213 140 52 chr15 64696234 64696370 -20999384 + MLT1K LTR MaLR 435 582 -6 633 268 22 53 chr15 64696379 64696642 -20999112 - L2 LINE L2 -266 3006 2754 220 204 0 0 chr15 64697063 64697107 -20998647 + (ATG)n Simple_repeat Simple_repeat 3 46 0 567 322 87 17 chr15 64697117 64697347 -20998407 - MIR SINE MIR -6 256 11 312 216 81 0 chr15 64697417 64697491 -20998263 + LTR33A LTR ERVL 83 162 -361 2296 130 43 74 chr15 64697635 64697700 -20998054 - MSTB1 LTR MaLR 0 432 366 1858 138 17 0 chr15 64697700 64697998 -20997756 + AluJb SINE Alu 1 303 -9 2296 130 43 74 chr15 64697998 64698378 -20997376 - MSTB1 LTR MaLR -66 366 1 390 184 107 10 chr15 64698392 64698495 -20997259 + LTR33A LTR ERVL 411 523 0 855 163 0 0 chr15 64698790 64698931 -20996823 - FLAM_C SINE Alu -2 141 1 1331 261 72 43 chr15 64699206 64699693 -20996061 + MLT1L LTR MaLR 115 615 0 201 345 88 47 chr15 64699741 64699889 -20995865 - MIR3 SINE MIR -51 157 4 294 246 0 14 chr15 64700767 64700836 -20994918 - LTR67 LTR ERVL -3 554 487 1928 167 164 8 chr15 64700957 64701341 -20994413 + MLT1F LTR MaLR 1 444 -98 286 238 60 0 chr15 64701364 64701448 -20994306 - MIR SINE MIR -72 190 102 310 236 0 0 chr15 64702493 64702565 -20993189 - MLT1J LTR MaLR -2 509 438 1020 183 0 64 chr15 64702565 64702768 -20992986 + AluJo SINE Alu 1 189 -123 2249 100 85 15 chr15 64702768 64703108 -20992646 + THE1B LTR MaLR 1 364 0 1020 183 0 64 chr15 64703108 64703139 -20992615 + AluJo SINE Alu 189 220 -92 645 170 0 18 chr15 64703165 64703277 -20992477 + FRAM SINE Alu 52 161 -15 1949 123 38 0 chr15 64703279 64703572 -20992182 + AluSx SINE Alu 1 304 -8 1071 225 111 27 chr15 64703781 64703872 -20991882 - MLT1J LTR MaLR -181 330 248 714 191 0 0 chr15 64703872 64703982 -20991772 + MER81 DNA DNA 5 114 0 1071 225 111 27 chr15 64703982 64704188 -20991566 - MLT1J LTR MaLR -263 248 8 2777 87 5 18 chr15 64704248 64704628 -20991126 - THE1C LTR MaLR 0 375 1 229 265 0 0 chr15 64704765 64704814 -20990940 + LTR67 LTR ERVL 108 156 -401 * 717 323 129 9 chr15 64704798 64705148 -20990606 + MLT1L LTR MaLR 200 591 -24 307 130 14 14 chr15 64705306 64705375 -20990379 + CT-rich Low_complexity Low_complexity 1 69 0 299 333 42 74 chr15 64705424 64705640 -20990114 - L2 LINE L2 -56 3216 3008 1456 157 130 4 chr15 64706636 64706898 -20988856 + AluJb SINE Alu 1 295 -17 1848 145 7 13 chr15 64706967 64707277 -20988477 + AluJo SINE Alu 1 308 -4 299 282 44 72 chr15 64707636 64707700 -20988054 - MLT1I LTR MaLR -19 390 326 1676 173 38 0 chr15 64707700 64707821 -20987933 + AluJo SINE Alu 1 116 -196 189 0 0 0 chr15 64707821 64707842 -20987912 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1676 173 38 0 chr15 64707842 64708009 -20987745 + AluJo SINE Alu 116 300 -12 299 282 44 72 chr15 64708009 64708125 -20987629 - MLT1I LTR MaLR -83 326 215 462 251 128 59 chr15 64708194 64708381 -20987373 - MIR SINE MIR -62 200 1 385 296 45 85 chr15 64708406 64708582 -20987172 + HAL1 LINE L1 6 174 -2333 471 240 156 28 chr15 64708593 64708772 -20986982 + HAL1 LINE L1 274 475 -2032 2038 137 0 6 chr15 64708784 64709098 -20986656 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 64709112 64709134 -20986620 + GC_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 64709134 64709163 -20986591 + AT_rich Low_complexity Low_complexity 1 29 0 1179 147 6 0 chr15 64709760 64709937 -20985817 - AluSx SINE Alu -133 179 2 27 0 0 0 chr15 64709950 64709977 -20985777 + AT_rich Low_complexity Low_complexity 1 27 0 958 224 5 10 chr15 64709977 64710210 -20985544 + AluJo SINE Alu 78 309 0 1149 215 155 21 chr15 64710212 64710547 -20985207 + HAL1 LINE L1 1560 1939 -568 2902 193 32 0 chr15 64710593 64711188 -20984566 + L1M4 LINE L1 4292 4905 -1241 1899 141 0 0 chr15 64711188 64711504 -20984250 + AluSx SINE Alu 1 316 0 518 131 102 15 chr15 64711538 64711675 -20984079 + L1MB7 LINE L1 6036 6184 0 713 158 89 6 chr15 64711761 64711919 -20983835 + MER104 DNA Tc2 10 180 0 1744 176 0 37 chr15 64711951 64712275 -20983479 + AluJo SINE Alu 1 312 0 440 115 26 0 chr15 64712275 64712348 -20983406 + GA-rich Low_complexity Low_complexity 8 82 0 616 278 52 46 chr15 64712348 64712697 -20983057 + HAL1 LINE L1 2053 2403 -104 2533 215 52 7 chr15 64713400 64713963 -20981791 - MLT1G LTR MaLR -2 588 1 25 0 0 0 chr15 64713972 64713997 -20981757 + AT_rich Low_complexity Low_complexity 1 25 0 700 267 86 30 chr15 64714062 64714294 -20981460 + MIR SINE MIR 11 255 -7 284 316 15 48 chr15 64714407 64714604 -20981150 + MLT1K LTR MaLR 42 233 -355 337 224 172 29 chr15 64714763 64714937 -20980817 + MLT1K LTR MaLR 390 588 0 1644 165 28 3 chr15 64715007 64715298 -20980456 - AluJo SINE Alu -4 308 11 1750 93 112 11 chr15 64715881 64716150 -20979604 - AluJb SINE Alu -15 297 2 745 223 105 142 chr15 64717188 64717298 -20978456 - MLT1J LTR MaLR -35 476 364 1591 134 78 7 chr15 64717298 64717581 -20978173 - AluJb SINE Alu -1 311 9 745 223 105 142 chr15 64717581 64717738 -20978016 - MLT1J LTR MaLR -147 364 203 812 185 144 0 chr15 64717738 64717933 -20977821 + MER58A DNA MER1_type 1 223 -1 745 223 105 142 chr15 64717933 64718035 -20977719 - MLT1J LTR MaLR -308 203 126 1468 173 72 0 chr15 64718035 64718313 -20977441 - AluJb SINE Alu -14 298 1 745 223 105 142 chr15 64718313 64718435 -20977319 - MLT1J LTR MaLR -385 126 1 1282 160 12 85 chr15 64719044 64719375 -20976379 + AluJo SINE Alu 1 307 -5 532 244 65 0 chr15 64719591 64719714 -20976040 + L3 LINE CR1 1171 1301 -276 356 311 98 11 chr15 64719797 64719980 -20975774 + L3 LINE CR1 1283 1481 -96 467 180 33 8 chr15 64720767 64720889 -20974865 - L1MC3 LINE L1 -1 7784 7660 2211 151 22 3 chr15 64720890 64721248 -20974506 + MLT1A1 LTR MaLR 1 365 0 839 237 63 0 chr15 64722180 64722370 -20973384 + MIR SINE MIR 33 234 -28 221 204 82 0 chr15 64722341 64722390 -20973364 + L2 LINE L2 3251 3303 -10 * 775 200 0 15 chr15 64722496 64722631 -20973123 + AluJ SINE Alu 1 133 -169 380 213 0 27 chr15 64722632 64722707 -20973047 - L1MC4 LINE L1 -1334 6708 6636 705 252 14 0 chr15 64722715 64722862 -20972892 + AluJ SINE Alu 125 273 -39 387 190 120 89 chr15 64723027 64723118 -20972636 + L1ME4a LINE L1 5956 6056 -65 2489 68 0 0 chr15 64723118 64723428 -20972326 - AluY SINE Alu -1 310 1 387 190 120 89 chr15 64723428 64723494 -20972260 + L1ME4a LINE L1 6056 6118 -3 581 264 131 15 chr15 64724564 64724591 -20971163 - L1ME3 LINE L1 -199 5963 5940 976 120 0 0 chr15 64724591 64724724 -20971030 - FLAM_C SINE Alu 0 133 1 581 264 131 15 chr15 64724724 64725522 -20970232 - L1ME3 LINE L1 -222 5940 5038 3082 213 24 27 chr15 64725524 64726363 -20969391 + L1ME2 LINE L1 5328 6163 -1 799 158 8 0 chr15 64726396 64726516 -20969238 - FLAM_A SINE Alu -9 124 4 319 243 81 67 chr15 64726544 64726754 -20969000 + L1MC4 LINE L1 7826 8038 -4 246 311 143 22 chr15 64726885 64727041 -20968713 - MIR SINE MIR -50 212 35 203 250 261 11 chr15 64727699 64727791 -20967963 - L2 LINE L2 -14 3299 3185 596 232 160 50 chr15 64728337 64728563 -20967191 + MIR SINE MIR 16 262 0 26 0 0 0 chr15 64728703 64728729 -20967025 + AT_rich Low_complexity Low_complexity 1 26 0 2319 103 0 16 chr15 64728813 64729124 -20966630 + AluSp SINE Alu 1 306 -7 1712 158 20 24 chr15 64729675 64729973 -20965781 + AluJo SINE Alu 1 297 -15 1789 180 0 7 chr15 64730341 64730646 -20965108 - AluJo SINE Alu -9 303 1 375 200 150 20 chr15 64730853 64730953 -20964801 - L2 LINE L2 0 3313 3201 358 278 12 35 chr15 64731469 64731605 -20964149 - MER103 DNA DNA -1 165 32 1323 140 63 0 chr15 64731605 64731826 -20963928 - MER46A DNA MER2_type -1 235 1 358 278 12 35 chr15 64731826 64731858 -20963896 - MER103 DNA DNA -134 32 1 254 264 0 0 chr15 64732513 64732566 -20963188 - L2 LINE L2 -10 3262 3210 23 33 0 0 chr15 64734481 64734511 -20961243 + GC_rich Low_complexity Low_complexity 1 30 0 361 286 175 7 chr15 64734743 64734897 -20960857 + MIR SINE MIR 47 226 -36 21 95 0 0 chr15 64735061 64735124 -20960630 + AT_rich Low_complexity Low_complexity 1 63 0 229 190 35 35 chr15 64735247 64735305 -20960449 - L1ME4a LINE L1 -107 6014 5957 273 98 0 0 chr15 64735312 64735353 -20960401 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 163 250 22 chr15 64735353 64735445 -20960309 - L1ME4a LINE L1 -398 5723 5611 376 210 37 0 chr15 64736408 64736489 -20959265 + MER45A DNA AcHobo 2 85 -93 2153 113 3 10 chr15 64736498 64736800 -20958954 - AluSx SINE Alu -12 300 1 867 122 0 38 chr15 64736802 64736933 -20958821 - AluJo/FLAM SINE Alu -186 126 1 359 205 0 24 chr15 64736933 64737016 -20958738 + MER45A DNA AcHobo 98 178 0 247 162 15 59 chr15 64737544 64737612 -20958142 + LTR66 LTR ERVL 375 439 -171 360 216 0 27 chr15 64737622 64737696 -20958058 - L1MC4 LINE L1 -1339 6703 6632 936 208 0 0 chr15 64737700 64737849 -20957905 + AluJb SINE Alu 125 273 -39 580 249 26 25 chr15 64739383 64739594 -20956160 + MIR3 SINE MIR 7 222 -40 1957 113 92 3 chr15 64739804 64740087 -20955667 - AluSx SINE Alu -4 308 1 2381 108 0 3 chr15 64740517 64740831 -20954923 - AluSq SINE Alu 0 313 1 412 281 99 65 chr15 64741005 64741242 -20954512 + MIR SINE MIR 11 259 -3 1996 70 7 0 chr15 64741320 64741592 -20954162 + L1MA2 LINE L1 6031 6304 0 25 51 0 0 chr15 64741629 64741668 -20954086 + AT_rich Low_complexity Low_complexity 1 39 0 595 261 28 0 chr15 64741710 64741852 -20953902 - MIR SINE MIR -102 160 15 1278 172 57 0 chr15 64741923 64742132 -20953622 - AluSx SINE Alu -91 221 1 2446 84 0 0 chr15 64742229 64742526 -20953228 + AluY SINE Alu 1 297 -14 275 253 11 21 chr15 64743135 64743230 -20952524 + GA-rich Low_complexity Low_complexity 82 175 0 1969 148 3 13 chr15 64743605 64743908 -20951846 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr15 64743977 64744000 -20951754 + AT_rich Low_complexity Low_complexity 1 23 0 606 191 0 0 chr15 64744009 64744114 -20951640 + U6 snRNA snRNA 1 105 -2 292 250 0 40 chr15 64744317 64744393 -20951361 + CT-rich Low_complexity Low_complexity 1 73 0 1920 179 0 0 chr15 64744393 64744695 -20951059 - AluJo SINE Alu -10 302 1 915 302 91 26 chr15 64744770 64745187 -20950567 + L2 LINE L2 2869 3312 -1 795 131 0 0 chr15 64745210 64745317 -20950437 + U6 snRNA snRNA 1 107 0 483 130 0 0 chr15 64745317 64745394 -20950360 + L1MA1 LINE L1 6226 6302 0 2265 111 0 0 chr15 64745516 64745813 -20949941 - AluSp SINE Alu -14 299 3 2011 143 17 0 chr15 64745813 64746113 -20949641 - AluSx SINE Alu -7 305 1 345 306 41 81 chr15 64746386 64746666 -20949088 + L1ME4a LINE L1 5617 5952 -169 2066 142 3 3 chr15 64746666 64746962 -20948792 - AluJo SINE Alu -16 296 1 345 306 41 81 chr15 64746962 64747054 -20948700 + L1ME4a LINE L1 5952 6046 -75 22 70 0 0 chr15 64747081 64747124 -20948630 + AT_rich Low_complexity Low_complexity 1 43 0 2094 124 3 0 chr15 64747176 64747458 -20948296 + AluSx SINE Alu 1 283 -29 252 0 0 0 chr15 64747460 64747488 -20948266 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2455 44 41 3 chr15 64747490 64747785 -20947969 + AluY SINE Alu 1 306 -5 1031 205 148 3 chr15 64748885 64749168 -20946586 + MER33 DNA MER1_type 1 324 0 2900 85 9 78 chr15 64749547 64749736 -20946018 + MSTC LTR MaLR 1 202 -226 2179 135 0 0 chr15 64749736 64750032 -20945722 - AluSx SINE Alu -14 298 3 2900 85 9 78 chr15 64750032 64750302 -20945452 + MSTC LTR MaLR 202 428 0 299 286 111 40 chr15 64750817 64750943 -20944811 - MIR SINE MIR -108 154 20 375 282 139 49 chr15 64751039 64751284 -20944470 - L3 LINE CR1 -11 1566 1300 344 234 63 18 chr15 64751633 64751703 -20944051 + L1ME4a LINE L1 5968 6046 -75 2302 120 0 0 chr15 64751703 64752011 -20943743 - AluSg SINE Alu -2 308 1 344 234 63 18 chr15 64752011 64752051 -20943703 + L1ME4a LINE L1 6046 6083 -38 2535 73 0 19 chr15 64752055 64752368 -20943386 - AluY SINE Alu -4 307 1 25 0 0 0 chr15 64753584 64753609 -20942145 + AT_rich Low_complexity Low_complexity 1 25 0 1774 158 61 10 chr15 64753671 64753968 -20941786 - AluJo SINE Alu 0 312 1 351 239 22 22 chr15 64754229 64754321 -20941433 - MIR SINE MIR 0 262 171 2094 108 4 4 chr15 64755190 64755505 -20940249 - AluSg SINE Alu 0 315 1 2161 98 41 14 chr15 64755798 64755934 -20939820 + AluSx SINE Alu 1 132 -180 2172 108 3 10 chr15 64755934 64756231 -20939523 + AluSg SINE Alu 1 295 -15 2161 98 41 14 chr15 64756231 64756389 -20939365 + AluSx SINE Alu 132 303 -9 1715 158 3 32 chr15 64757146 64757431 -20938323 - AluJo SINE Alu -35 277 1 2317 101 3 0 chr15 64757442 64757740 -20938014 - AluSx SINE Alu -13 299 1 700 166 108 40 chr15 64757741 64757998 -20937756 - MER33 DNA MER1_type -219 105 1 2294 81 3 0 chr15 64758080 64758483 -20937271 + AluSx SINE Alu 1 404 0 4099 129 31 3 chr15 64759165 64759800 -20935954 + MER39B LTR ERV1 1 653 0 321 272 203 28 chr15 64760272 64760489 -20935265 - L1MC4a LINE L1 -1958 5850 5596 1874 168 0 14 chr15 64760498 64760784 -20934970 + AluJo SINE Alu 1 282 -30 325 326 72 33 chr15 64760816 64760997 -20934757 + L1ME LINE L1 723 910 -5160 965 161 21 36 chr15 64761306 64761385 -20934369 - MER5A DNA MER1_type 0 189 110 1756 147 0 4 chr15 64761385 64761644 -20934110 - AluSx SINE Alu -14 298 41 965 161 21 36 chr15 64761644 64761756 -20933998 - MER5A DNA MER1_type -79 110 1 2122 103 0 67 chr15 64761782 64762113 -20933641 + AluSc SINE Alu 1 309 0 319 149 75 15 chr15 64762574 64762641 -20933113 + MIR SINE MIR 91 161 -101 278 178 0 0 chr15 64762633 64762678 -20933076 + L2 LINE L2 3210 3254 -18 * 313 132 0 0 chr15 64763204 64763257 -20932497 + Alu SINE Alu 250 302 0 708 294 164 21 chr15 64763276 64764070 -20931684 - L2 LINE L2 -269 3044 2141 209 125 0 25 chr15 64764402 64764442 -20931312 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 312 346 68 31 chr15 64764715 64764877 -20930877 + MIR3 SINE MIR 3 170 -38 359 284 68 31 chr15 64765250 64765412 -20930342 - L3 LINE CR1 -3 1574 1407 189 0 0 0 chr15 64765467 64765488 -20930266 + (CA)n Simple_repeat Simple_repeat 1 21 0 463 145 48 97 chr15 64765488 64765612 -20930142 - MER103 DNA DNA -48 118 1 198 0 0 0 chr15 64765724 64765746 -20930008 + (TTTCC)n Simple_repeat Simple_repeat 1 22 0 2265 103 0 0 chr15 64765747 64766028 -20929726 - AluSx SINE Alu -31 281 1 994 279 175 36 chr15 64766028 64766339 -20929415 - L3 LINE CR1 -193 1384 1118 1584 171 13 143 chr15 64766339 64766794 -20928960 + MSTD LTR MaLR 1 396 0 994 279 175 36 chr15 64766794 64767037 -20928717 - L3 LINE CR1 -459 1118 753 211 297 68 14 chr15 64767966 64768040 -20927714 + MIR SINE MIR 107 184 -78 505 278 29 37 chr15 64768366 64768607 -20927147 + L1MC4a LINE L1 5693 5931 -1877 704 194 0 32 chr15 64768619 64768743 -20927011 + FLAM_A SINE Alu 1 120 -13 2386 112 0 0 chr15 64769140 64769444 -20926310 - AluSx SINE Alu -6 306 3 662 332 71 35 chr15 64769484 64769644 -20926110 - L2 LINE L2 -912 2402 2249 1671 179 10 36 chr15 64769644 64769951 -20925803 + AluJo SINE Alu 1 299 -13 2032 113 0 10 chr15 64769951 64770242 -20925512 + AluSx SINE Alu 25 312 0 662 332 71 35 chr15 64770242 64770685 -20925069 - L2 LINE L2 -1064 2250 1776 1538 146 51 29 chr15 64771578 64771715 -20924039 + MLT1A1 LTR MaLR 10 142 -223 2102 135 0 3 chr15 64771715 64772018 -20923736 + AluJo SINE Alu 6 307 -5 1538 146 51 29 chr15 64772018 64772195 -20923559 + MLT1A1 LTR MaLR 142 331 -34 326 270 270 14 chr15 64772335 64772483 -20923271 - MER5A DNA MER1_type -1 188 3 207 252 78 58 chr15 64772790 64772893 -20922861 - MIR3 SINE MIR -91 117 13 242 305 130 49 chr15 64772920 64773112 -20922642 + L2 LINE L2 1746 1960 -1354 378 0 0 0 chr15 64773112 64773154 -20922600 + (TG)n Simple_repeat Simple_repeat 1 42 0 242 305 130 49 chr15 64773154 64773184 -20922570 + L2 LINE L2 1960 1986 -1328 2243 124 10 0 chr15 64774071 64774378 -20921376 - AluSx SINE Alu -2 310 1 306 387 19 0 chr15 64774511 64774666 -20921088 + MIR3 SINE MIR 51 208 0 183 299 108 52 chr15 64774917 64775148 -20920606 + L2 LINE L2 2861 3104 -168 2204 85 3 0 chr15 64775199 64775508 -20920246 - AluSp SINE Alu 0 310 1 235 236 55 27 chr15 64776624 64776734 -20919020 - L2 LINE L2 -160 3112 3000 351 75 50 125 chr15 64776924 64777004 -20918750 - MER69 DNA AcHobo -1080 146 73 2351 91 0 0 chr15 64777468 64777777 -20917977 + AluSx SINE Alu 1 309 -3 348 220 129 76 chr15 64777956 64778088 -20917666 + MIR3 SINE MIR 41 179 -29 986 154 0 29 chr15 64778265 64778429 -20917325 + AluJo SINE Alu 121 281 -31 252 0 0 0 chr15 64778429 64778457 -20917297 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 880 122 8 0 chr15 64778472 64778603 -20917151 + AluJb SINE Alu 7 138 -174 23 54 0 0 chr15 64778623 64778660 -20917094 + AT_rich Low_complexity Low_complexity 1 37 0 1521 122 70 29 chr15 64778665 64779086 -20916668 + LTR54 LTR ERV1 1 510 0 398 126 137 11 chr15 64779097 64779192 -20916562 + L1MB4 LINE L1 6074 6180 0 1174 149 12 56 chr15 64779224 64779293 -20916461 + AluJo SINE Alu 59 130 -182 821 102 0 8 chr15 64779293 64779420 -20916334 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 261 0 0 0 chr15 64779421 64779450 -20916304 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1174 149 12 56 chr15 64779450 64779627 -20916127 + AluJo SINE Alu 129 296 -16 2150 120 0 0 chr15 64779632 64779940 -20915814 + AluSx SINE Alu 3 310 -2 184 277 21 0 chr15 64780945 64780992 -20914762 - MER5A DNA MER1_type 0 189 142 657 265 53 0 chr15 64781161 64781331 -20914423 - MER5A DNA MER1_type -9 180 2 545 230 120 24 chr15 64781965 64782174 -20913580 + MIR SINE MIR 1 229 -33 250 277 0 0 chr15 64782501 64782548 -20913206 - MIR SINE MIR 0 262 216 705 177 0 0 chr15 64782575 64782699 -20913055 - MIR SINE MIR -125 137 14 224 344 0 16 chr15 64782720 64782784 -20912970 - MIR SINE MIR -180 82 20 226 273 0 34 chr15 64782829 64782917 -20912837 + MER113 DNA MER1_type? 39 123 -398 2173 111 0 0 chr15 64782919 64783217 -20912537 + AluSx SINE Alu 1 298 -14 660 197 7 7 chr15 64783243 64783380 -20912374 - L1MA10 LINE L1 -3 6331 6195 801 194 17 67 chr15 64783543 64783723 -20912031 - AluJb SINE Alu -140 172 2 225 0 0 0 chr15 64783736 64783761 -20911993 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 482 82 0 14 chr15 64783768 64783841 -20911913 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 789 211 67 0 chr15 64783842 64784022 -20911732 - AluJb SINE Alu -5 307 116 426 303 110 23 chr15 64784047 64784519 -20911235 - L1MEc LINE L1 -4688 1696 1184 * 2349 253 24 20 chr15 64784492 64785152 -20910602 - L1MEc LINE L1 -5698 865 203 2022 111 3 3 chr15 64785163 64785461 -20910293 - AluY SINE Alu -13 298 1 361 214 0 0 chr15 64785472 64785542 -20910212 - L1MB8 LINE L1 0 6178 6109 4091 145 12 7 chr15 64785544 64786235 -20909519 + L1MA4 LINE L1 5580 6273 -27 300 81 290 0 chr15 64786239 64786301 -20909453 - MADE1 DNA Mariner 0 80 1 180 0 0 0 chr15 64786333 64786353 -20909401 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1982 109 0 36 chr15 64786360 64786663 -20909091 - AluSg SINE Alu -18 292 1 1997 194 26 0 chr15 64786664 64787050 -20908704 - L1MB8 LINE L1 -54 6124 5729 1367 69 12 0 chr15 64787053 64787226 -20908528 - AluSq SINE Alu -138 175 1 1217 195 115 9 chr15 64787227 64787632 -20908122 - L1MB8 LINE L1 -600 5584 5134 253 135 79 90 chr15 64787641 64787730 -20908024 + MER113 DNA MER1_type? 131 218 -303 23 0 0 0 chr15 64787769 64787792 -20907962 + AT_rich Low_complexity Low_complexity 1 23 0 284 317 50 37 chr15 64788174 64788335 -20907419 + MER5A DNA MER1_type 1 163 -26 249 308 119 14 chr15 64788926 64789069 -20906685 + MIR SINE MIR 94 251 -11 1964 140 0 0 chr15 64789369 64789669 -20906085 - AluJb SINE Alu -12 300 1 225 290 109 36 chr15 64790461 64790654 -20905100 - MIR SINE MIR -35 227 21 241 315 46 0 chr15 64790799 64790907 -20904847 + MLT1K LTR MaLR 196 308 -280 765 99 0 119 chr15 64791553 64791704 -20904050 - AluJo SINE Alu -178 134 2 205 306 154 47 chr15 64791714 64792267 -20903487 + L2 LINE L2 1494 2105 -1209 387 302 119 60 chr15 64792706 64793136 -20902618 + L2 LINE L2 2815 3269 -3 1623 126 76 0 chr15 64793624 64793901 -20901853 + AluJb SINE Alu 5 302 -10 1037 103 0 22 chr15 64793901 64794085 -20901669 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 181 298 21 32 chr15 64794631 64794725 -20901029 + L2 LINE L2 2971 3063 -209 210 211 0 0 chr15 64794745 64794783 -20900971 + L2 LINE L2 3230 3267 -5 794 141 8 0 chr15 64795301 64795429 -20900325 - FLAM_C SINE Alu -13 130 2 523 249 46 29 chr15 64795669 64795842 -20899912 + MLT1K LTR MaLR 412 587 -1 2163 107 0 0 chr15 64796936 64797236 -20898518 + AluSx SINE Alu 5 304 -8 1700 131 11 8 chr15 64798699 64798966 -20896788 + AluJo SINE Alu 26 293 -19 1521 109 39 148 chr15 64799513 64799851 -20895903 - AluJb SINE Alu -1 301 1 1683 98 4 0 chr15 64800546 64800780 -20894974 + AluSp SINE Alu 66 300 -13 2377 74 0 3 chr15 64802336 64802648 -20893106 + AluSq SINE Alu 1 311 -2 797 153 0 24 chr15 64802995 64803119 -20892635 + FLAM_C SINE Alu 1 121 -12 383 306 64 25 chr15 64803254 64803489 -20892265 - HAL1b LINE L1 -437 911 668 944 311 63 22 chr15 64803490 64803949 -20891805 - HAL1b LINE L1 -703 645 168 2271 104 0 0 chr15 64803954 64804263 -20891491 - AluSx SINE Alu -3 309 1 260 250 16 81 chr15 64804926 64805050 -20890704 - HAL1b LINE L1 0 1348 1233 419 166 117 42 chr15 64806123 64806245 -20889509 - MIR SINE MIR -69 139 58 314 305 40 46 chr15 64806542 64806716 -20889038 + MIR3 SINE MIR 34 206 -2 511 353 49 75 chr15 64806792 64807262 -20888492 - L2 LINE L2 0 3272 2815 256 341 29 53 chr15 64807561 64807769 -20887985 + L3 LINE CR1 1186 1388 -189 268 175 119 141 chr15 64809246 64809331 -20886423 + L1ME4a LINE L1 5529 5614 -507 1775 162 0 3 chr15 64809331 64809634 -20886120 + AluJo SINE Alu 1 302 -10 268 175 119 141 chr15 64809634 64809725 -20886029 + L1ME4a LINE L1 5614 5701 -420 298 241 254 51 chr15 64809765 64810135 -20885619 + L1ME4a LINE L1 5677 6121 0 415 234 103 0 chr15 64810898 64811043 -20884711 + MER112 DNA MER1_type 12 171 -89 576 130 140 0 chr15 64811053 64811153 -20884601 - FRAM SINE Alu -1 175 62 1336 177 144 45 chr15 64811177 64811713 -20884041 + MLT1G3 LTR MaLR 1 590 0 239 274 137 0 chr15 64811713 64811785 -20883969 + MER112 DNA MER1_type 179 260 0 500 328 112 38 chr15 64813524 64813811 -20881943 - L2 LINE L2 -36 3236 2929 440 298 188 48 chr15 64813989 64814982 -20880772 + L2 LINE L2 596 1727 -1587 2052 99 0 42 chr15 64814994 64815306 -20880448 + AluSx SINE Alu 1 299 -13 3223 189 66 43 chr15 64815703 64816226 -20879528 + L1MC4 LINE L1 7161 7713 -329 1837 137 90 29 chr15 64816226 64816276 -20879478 - MLT1A1 LTR MaLR 0 365 319 1509 161 0 58 chr15 64816276 64816587 -20879167 - AluJo SINE Alu -19 293 1 1837 137 90 29 chr15 64816587 64816880 -20878874 - MLT1A1 LTR MaLR -46 319 1 3223 189 66 43 chr15 64816880 64817218 -20878536 + L1MC4 LINE L1 7713 8042 0 2026 119 26 0 chr15 64817222 64817525 -20878229 - AluSx SINE Alu -1 311 1 276 53 0 0 chr15 64817876 64817914 -20877840 + (A)n Simple_repeat Simple_repeat 1 38 0 2025 126 7 7 chr15 64817965 64818267 -20877487 + AluSq SINE Alu 1 302 -11 594 177 40 32 chr15 64818297 64818421 -20877333 + FLAM_A SINE Alu 1 125 -8 434 269 151 18 chr15 64818425 64818644 -20877110 - L1MC5 LINE L1 -78 7883 7636 316 244 33 89 chr15 64819194 64819374 -20876380 + L1MC5 LINE L1 5629 5798 -323 462 350 81 15 chr15 64819612 64819809 -20875945 + L2 LINE L2 2518 2727 -587 2310 88 0 0 chr15 64819947 64820242 -20875512 - AluSq SINE Alu -18 295 1 735 292 100 48 chr15 64820279 64820562 -20875192 + L1MB7 LINE L1 4037 4304 -1883 2641 13 16 0 chr15 64820562 64820867 -20874887 - AluYb8 SINE Alu -8 310 1 735 292 100 48 chr15 64820867 64821677 -20874077 + L1MB7 LINE L1 4304 5109 -1078 1772 159 3 22 chr15 64821677 64821992 -20873762 - AluSx SINE Alu -3 309 1 735 292 100 48 chr15 64821992 64822347 -20873407 + L1MB7 LINE L1 5109 5444 -743 1304 128 132 4 chr15 64822367 64822602 -20873152 + AluJb SINE Alu 29 293 -19 1616 166 64 77 chr15 64822633 64823073 -20872681 + L1MB7 LINE L1 5732 6165 -19 372 286 9 0 chr15 64823079 64823191 -20872563 + L1MC5 LINE L1 5816 5928 -1880 884 170 44 98 chr15 64823202 64823520 -20872234 + L1MC5 LINE L1 6895 7195 -766 950 148 0 44 chr15 64823536 64823718 -20872036 + FRAM SINE Alu 1 174 -2 1748 222 52 33 chr15 64823755 64824214 -20871540 + MLT1F LTR MaLR 60 527 -15 415 211 89 8 chr15 64824428 64824551 -20871203 - MIR SINE MIR -65 197 65 7022 26 0 0 chr15 64825135 64825934 -20869820 - L1PA3 LINE L1 0 6155 5357 8207 24 0 3 chr15 64825138 64826255 -20869499 - L1PA3 LINE L1 -3 6152 5037 402 294 22 15 chr15 64826383 64826519 -20869235 - MIR SINE MIR -112 150 14 2405 231 63 16 chr15 64827570 64828177 -20867577 - L1ME3A LINE L1 -8 6162 5528 315 0 0 0 chr15 64828701 64828736 -20867018 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr15 64828735 64828756 -20866998 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 24 0 0 0 chr15 64830045 64830069 -20865685 + AT_rich Low_complexity Low_complexity 1 24 0 610 232 134 6 chr15 64830069 64830233 -20865521 - MIR SINE MIR 0 262 78 584 197 176 0 chr15 64830675 64830817 -20864937 - L1ME3A LINE L1 -71 6099 5933 201 348 61 35 chr15 64831066 64831296 -20864458 + L2 LINE L2 1107 1342 -1972 1522 40 40 45 chr15 64831874 64832073 -20863681 - L1PA3 LINE L1 0 6155 5958 1704 181 38 3 chr15 64832743 64833035 -20862719 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr15 64833294 64833333 -20862421 + AT_rich Low_complexity Low_complexity 1 39 0 342 231 31 62 chr15 64833512 64833642 -20862112 - MLT1K LTR MaLR 0 588 463 273 367 0 9 chr15 64833768 64833877 -20861877 - MLT1K LTR MaLR -342 246 139 * 283 240 280 0 chr15 64833851 64833951 -20861803 - MLT1K LTR MaLR -355 233 106 1063 254 79 25 chr15 64834008 64834323 -20861431 + MLT1J2 LTR MaLR 1 332 -118 297 265 24 0 chr15 64835016 64835099 -20860655 + MLT1K LTR MaLR 504 588 0 500 196 43 65 chr15 64835370 64835508 -20860246 + MER21B LTR ERV1 98 232 -631 308 28 0 0 chr15 64835516 64835552 -20860202 + U2 snRNA snRNA 1 36 -152 * 1740 196 98 76 chr15 64835548 64836088 -20859666 + MER21B LTR ERV1 221 772 -91 661 122 0 0 chr15 64836093 64836183 -20859571 + FLAM SINE Alu 38 127 -16 345 247 32 21 chr15 64836230 64836323 -20859431 + MIR SINE MIR 169 262 0 302 271 7 111 chr15 64838011 64838155 -20857599 - MIR SINE MIR -114 148 20 2131 99 0 3 chr15 64838286 64838612 -20857142 + AluSc SINE Alu 1 309 0 320 259 47 47 chr15 64838621 64838706 -20857048 + L2 LINE L2 3186 3270 -2 2271 102 0 7 chr15 64838737 64839041 -20856713 + AluSx SINE Alu 1 302 -10 374 269 56 56 chr15 64839871 64840031 -20855723 + MIR3 SINE MIR 22 181 -27 2351 89 0 10 chr15 64840264 64840567 -20855187 + AluSp SINE Alu 1 300 -13 23 0 0 0 chr15 64840638 64840661 -20855093 + AT_rich Low_complexity Low_complexity 1 23 0 2040 141 0 7 chr15 64840664 64840963 -20854791 + AluJo SINE Alu 1 297 -15 2479 123 66 12 chr15 64840966 64841309 -20854445 + Tigger3(Golem) DNA MER2_type 2384 2754 -275 2223 117 7 3 chr15 64841309 64841617 -20854137 - AluSx SINE Alu -3 309 1 2479 123 66 12 chr15 64841617 64841681 -20854073 + Tigger3(Golem) DNA MER2_type 2754 2813 -216 1601 173 30 27 chr15 64841681 64841981 -20853773 + AluJo SINE Alu 2 302 -10 315 285 79 42 chr15 64842107 64842272 -20853482 + L1ME2 LINE L1 5298 5468 -2340 229 238 0 0 chr15 64842326 64842368 -20853386 + Alu SINE Alu 137 178 -125 1266 214 33 45 chr15 64842459 64842541 -20853213 + L1ME2 LINE L1 5822 5903 -261 1860 143 13 33 chr15 64842541 64842842 -20852912 + AluJo SINE Alu 3 297 -15 1266 214 33 45 chr15 64842842 64843096 -20852658 + L1ME2 LINE L1 5903 6154 -10 2282 90 20 3 chr15 64843175 64843475 -20852279 - AluSq SINE Alu -8 305 1 531 197 65 30 chr15 64843669 64843832 -20851922 + L1ME3 LINE L1 6014 6160 -2 346 272 121 55 chr15 64843849 64844228 -20851526 + L1MEd LINE L1 802 1205 -4914 1995 153 10 7 chr15 64844251 64844551 -20851203 - AluJo SINE Alu -11 301 1 1757 262 32 41 chr15 64844552 64845235 -20850519 - HAL1 LINE L1 -1199 1308 632 250 254 16 0 chr15 64946039 64946102 -20749652 + GA-rich Low_complexity Low_complexity 1 64 0 2127 104 24 0 chr15 64946225 64946513 -20749241 + AluSx SINE Alu 1 295 -17 223 343 141 9 chr15 64946910 64947123 -20748631 - MIR SINE MIR -14 248 8 372 274 57 8 chr15 64947637 64947761 -20747993 + MLT1I LTR MaLR 2 131 -278 2165 114 3 23 chr15 64947797 64948104 -20747650 + AluSq SINE Alu 1 301 -12 289 260 49 42 chr15 64948163 64948344 -20747410 + MLT1I LTR MaLR 267 403 -6 191 302 0 0 chr15 64948899 64948952 -20746802 + MIR3 SINE MIR 154 206 -2 1729 159 31 3 chr15 64950842 64951132 -20744622 - AluJb SINE Alu -14 298 1 183 274 132 28 chr15 64951142 64951248 -20744506 + L3 LINE CR1 1097 1213 -364 192 77 0 0 chr15 64951248 64951274 -20744480 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 2529 87 0 0 chr15 64951308 64951620 -20744134 + AluSq SINE Alu 1 312 -1 181 240 40 0 chr15 64951651 64951701 -20744053 + L3 LINE CR1 1360 1411 -166 694 214 56 46 chr15 64951848 64952091 -20743663 - L1ME3 LINE L1 0 6164 5919 263 176 0 0 chr15 64952659 64952710 -20743044 + U5 snRNA snRNA 1 51 -65 184 294 15 44 chr15 64952715 64952783 -20742971 + MIR SINE MIR 30 95 -113 290 266 239 16 chr15 64952950 64953138 -20742616 - MIR SINE MIR -13 249 20 1694 163 10 27 chr15 64953285 64953580 -20742174 - AluJo SINE Alu -22 290 1 233 280 220 8 chr15 64954595 64954713 -20741041 - MIR3 SINE MIR -52 156 14 1733 169 29 0 chr15 64955537 64955815 -20739939 + AluSx SINE Alu 2 287 -25 267 31 0 0 chr15 64955815 64955847 -20739907 + (TA)n Simple_repeat Simple_repeat 2 33 0 1696 151 16 57 chr15 64956256 64956573 -20739181 - AluJo SINE Alu -8 304 1 827 126 0 24 chr15 64956593 64956720 -20739034 + FLAM_C SINE Alu 2 125 -8 24 53 0 0 chr15 64956720 64956758 -20738996 + AT_rich Low_complexity Low_complexity 1 38 0 2004 146 7 0 chr15 64957044 64957346 -20738408 - AluSx SINE Alu -8 304 1 459 0 0 0 chr15 64957425 64957476 -20738278 + (CA)n Simple_repeat Simple_repeat 2 52 0 1913 158 3 7 chr15 64958582 64958886 -20736868 + AluJo SINE Alu 1 303 -9 1805 101 116 4 chr15 64958903 64959171 -20736583 + AluSx SINE Alu 1 298 -14 210 325 71 31 chr15 64959173 64959466 -20736288 + L2 LINE L2 2709 3016 -256 226 290 14 0 chr15 64959656 64959725 -20736029 + L2 LINE L2 3244 3313 0 2541 68 0 0 chr15 64960140 64960451 -20735303 + AluY SINE Alu 1 311 0 645 238 103 5 chr15 64960747 64960932 -20734822 + MIR SINE MIR 31 233 -29 180 111 0 0 chr15 64960962 64960989 -20734765 + (ATG)n Simple_repeat Simple_repeat 3 29 0 1989 142 10 0 chr15 64961072 64961360 -20734394 + AluSx SINE Alu 1 291 -21 259 259 0 0 chr15 64961518 64961576 -20734178 + L2 LINE L2 3215 3272 0 2559 57 0 0 chr15 64961581 64961878 -20733876 + AluY SINE Alu 1 297 -14 351 331 50 7 chr15 64962242 64962381 -20733373 + MIR SINE MIR 19 163 -99 495 128 0 58 chr15 64962383 64962469 -20733285 + AluJ/FRAM SINE Alu 221 301 -11 562 145 8 53 chr15 64962470 64962601 -20733153 + AluSq/x SINE Alu 2 126 -186 269 188 58 0 chr15 64962705 64962774 -20732980 - MER5A DNA MER1_type -86 103 31 2188 125 3 7 chr15 64962789 64963094 -20732660 - AluSx SINE Alu -8 304 1 726 263 97 7 chr15 64963179 64963468 -20732286 + L2 LINE L2 2980 3294 -19 541 276 231 0 chr15 64964180 64964401 -20731353 + MLT1K LTR MaLR 311 582 -6 286 298 79 9 chr15 64964443 64964557 -20731197 - L2 LINE L2 -13 3300 3179 195 298 16 94 chr15 64964847 64965092 -20730662 - L2 LINE L2 -464 2850 2625 884 185 38 19 chr15 64965183 64965424 -20730330 - MER33 DNA MER1_type 0 363 5 421 215 59 22 chr15 64965521 64965656 -20730098 - MIR SINE MIR -55 207 68 240 287 8 82 chr15 64965969 64966091 -20729663 - L1ME LINE L1 -491 5630 5518 2193 94 20 7 chr15 64966153 64966450 -20729304 + AluSc SINE Alu 1 301 -8 569 206 6 73 chr15 64967722 64967887 -20727867 - MER103 DNA DNA -7 159 6 918 182 0 13 chr15 64968042 64968201 -20727553 + MLT1A2 LTR MaLR 5 161 -213 1942 104 0 4 chr15 64968213 64968463 -20727291 + AluSx SINE Alu 1 249 -63 414 248 19 9 chr15 64971797 64971902 -20723852 - MIR SINE MIR -110 152 47 754 169 28 0 chr15 64973012 64973154 -20722600 - FRAM SINE Alu -30 146 1 342 273 78 23 chr15 64973921 64974049 -20721705 + MIR SINE MIR 20 154 -108 332 0 47 0 chr15 64974177 64974220 -20721534 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1501 56 0 6 chr15 64974220 64974394 -20721360 - AluY SINE Alu -26 285 113 433 70 0 0 chr15 64974396 64974453 -20721301 - AluJ/FLAM SINE Alu -254 58 2 567 255 32 68 chr15 64974792 64975043 -20720711 - L1MC4 LINE L1 -11 8031 7790 1216 256 64 49 chr15 64975058 64975653 -20720101 - L1MC4 LINE L1 -400 7642 7039 1532 207 61 22 chr15 64976447 64976858 -20718896 - L1ME LINE L1 -924 5222 4796 * 1890 199 46 121 chr15 64976846 64976989 -20718765 - L1ME LINE L1 -1639 4507 4355 2234 91 24 0 chr15 64976989 64977286 -20718468 - AluY SINE Alu -7 304 1 1890 199 46 121 chr15 64977286 64977822 -20717932 - L1ME LINE L1 -1791 4355 3780 1308 168 12 107 chr15 64977822 64978150 -20717604 - AluJo SINE Alu -4 298 2 1890 199 46 121 chr15 64978150 64978164 -20717590 - L1ME LINE L1 -2366 3780 3767 1598 171 55 4 chr15 64978164 64978438 -20717316 - AluJb SINE Alu -24 288 1 1890 199 46 121 chr15 64978438 64978669 -20717085 - L1ME LINE L1 -2379 3767 3656 2072 182 72 33 chr15 64978706 64979190 -20716564 + MLT1D LTR MaLR 1 503 -2 389 340 64 0 chr15 64979281 64979437 -20716317 - MIR3 SINE MIR -2 206 41 978 273 132 34 chr15 64980962 64981438 -20714316 - L2 LINE L2 -20 3293 2788 234 18 70 35 chr15 64981815 64981872 -20713882 + (TA)n Simple_repeat Simple_repeat 2 60 0 967 206 139 30 chr15 64982535 64982557 -20713197 - L1MC4 LINE L1 -1 8041 8023 968 179 0 0 chr15 64982557 64982719 -20713035 + FRAM SINE Alu 1 162 -4 967 206 139 30 chr15 64982719 64983232 -20712522 - L1MC4 LINE L1 -19 8023 7350 251 200 0 0 chr15 64983548 64983593 -20712161 + L2 LINE L2 3269 3313 0 224 294 96 41 chr15 64984840 64984986 -20710768 - L2 LINE L2 -995 2319 2166 194 375 23 0 chr15 64986203 64986291 -20709463 + L3 LINE CR1 1483 1572 -5 195 42 0 0 chr15 64986534 64986558 -20709196 + (A)n Simple_repeat Simple_repeat 1 24 0 225 333 67 0 chr15 64987827 64987902 -20707852 + MER5A DNA MER1_type 110 189 0 271 208 148 67 chr15 64988947 64989096 -20706658 - L1ME4a LINE L1 0 6121 5961 480 302 67 11 chr15 64989269 64989448 -20706306 - MIR SINE MIR -17 245 57 2090 126 0 13 chr15 64989584 64989894 -20705860 - AluSq SINE Alu -7 306 1 685 281 110 23 chr15 64991084 64991394 -20704360 + L2 LINE L2 2956 3292 -21 317 273 151 35 chr15 64991506 64991678 -20704076 + MIR SINE MIR 20 211 -51 618 138 0 0 chr15 64992153 64992247 -20703507 - MER30 DNA MER1_type 0 230 137 2796 32 0 0 chr15 64992247 64992563 -20703191 + AluYb8 SINE Alu 1 316 -2 1302 114 0 0 chr15 64992568 64992743 -20703011 + AluSg/x SINE Alu 129 303 -9 725 108 39 31 chr15 64992743 64992873 -20702881 - MER30 DNA MER1_type -92 138 8 1085 246 9 19 chr15 64994629 64994954 -20700800 - L1MC4 LINE L1 -975 7067 6746 2031 221 82 30 chr15 64995561 64996266 -20699488 - L1MC4 LINE L1 -4 8038 7297 612 271 89 40 chr15 64996544 64996791 -20698963 - MIR SINE MIR -1 261 3 1737 198 61 35 chr15 64997041 64997466 -20698288 + MER63B DNA MER1_type 1 436 0 189 94 0 0 chr15 64998869 64998901 -20696853 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1562 194 14 3 chr15 64998905 64999199 -20696555 + AluJo SINE Alu 1 297 -15 646 190 65 27 chr15 64999459 64999643 -20696111 - MER58B DNA MER1_type -15 326 136 22 35 0 0 chr15 65000523 65000552 -20695202 + AT_rich Low_complexity Low_complexity 1 29 0 2357 97 3 10 chr15 65000570 65000879 -20694875 + AluSq SINE Alu 1 307 -6 642 196 0 23 chr15 65001109 65001242 -20694512 - Tigger3(Golem) DNA MER2_type -1 3028 2899 298 285 39 62 chr15 65001511 65001641 -20694113 + L2 LINE L2 3164 3290 -23 578 195 0 86 chr15 65003937 65004065 -20691689 + FLAM_A SINE Alu 1 117 -16 827 142 8 0 chr15 65004227 65004354 -20691400 - FLAM_A SINE Alu -1 132 5 596 260 59 41 chr15 65004476 65004814 -20690940 + L1ME1 LINE L1 4385 4728 -1418 * 872 236 68 4 chr15 65004807 65005057 -20690697 + L1ME1 LINE L1 5896 6161 -5 2339 67 7 0 chr15 65005064 65005369 -20690385 - AluY SINE Alu 0 307 1 214 283 0 0 chr15 65006019 65006072 -20689682 + MIR SINE MIR 89 141 -67 219 36 0 0 chr15 65006262 65006290 -20689464 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2198 98 0 3 chr15 65006290 65006577 -20689177 - AluSq SINE Alu -27 286 1 2214 114 0 0 chr15 65007368 65007665 -20688089 + AluSq SINE Alu 1 297 -16 185 268 0 0 chr15 65007698 65007739 -20688015 - L2 LINE L2 -92 3180 3140 221 317 117 25 chr15 65008650 65008770 -20686984 + L3 LINE CR1 622 752 -825 289 308 120 23 chr15 65008817 65008950 -20686804 - L2 LINE L2 0 3272 3127 208 234 0 21 chr15 65009257 65009271 -20686483 - MIR SINE MIR 0 262 217 221 182 0 0 chr15 65009271 65009304 -20686450 - L2 LINE L2 -19 3294 3262 185 300 115 85 chr15 65009311 65009477 -20686277 + L3 LINE CR1 814 974 -603 198 0 0 0 chr15 65009477 65009499 -20686255 + (TG)n Simple_repeat Simple_repeat 2 23 0 185 300 115 85 chr15 65009499 65009742 -20686012 + L3 LINE CR1 974 1235 -342 7699 20 1 1 chr15 65009963 65011220 -20684534 + L1PA3 LINE L1 4896 6152 -3 2314 52 7 42 chr15 65011322 65011629 -20684125 + AluY SINE Alu 1 296 -15 413 308 42 14 chr15 65011824 65011967 -20683787 + MIR SINE MIR 17 163 -99 224 339 146 0 chr15 65012143 65012273 -20683481 - MIR SINE MIR -111 151 3 1122 250 112 47 chr15 65013270 65013521 -20682233 - L1ME LINE L1 -4940 1140 907 2751 13 7 3 chr15 65013521 65013831 -20681923 - AluYa5 SINE Alu 0 311 1 1122 250 112 47 chr15 65013831 65014340 -20681414 - L1ME LINE L1 -5173 907 308 529 238 19 19 chr15 65014392 65014552 -20681202 - L1ME LINE L1 -5848 222 63 266 265 91 38 chr15 65015078 65015158 -20680596 - L2 LINE L2 0 3313 3221 2226 92 0 0 chr15 65015158 65015464 -20680290 + AluSx SINE Alu 1 306 0 266 265 91 38 chr15 65015464 65015514 -20680240 - L2 LINE L2 -92 3221 3175 567 219 36 57 chr15 65015556 65015748 -20680006 - MLT1D LTR MaLR 0 505 318 2380 74 0 0 chr15 65015900 65016185 -20679569 + AluY SINE Alu 13 297 -14 1926 101 3 52 chr15 65016188 65016476 -20679278 + AluSx SINE Alu 1 274 -38 306 323 77 68 chr15 65016493 65016831 -20678923 - L2 LINE L2 -926 2388 2048 21 0 0 0 chr15 65017163 65017184 -20678570 + AT_rich Low_complexity Low_complexity 1 21 0 210 105 0 0 chr15 65017279 65017317 -20678437 + (A)n Simple_repeat Simple_repeat 1 38 0 225 234 54 126 chr15 65017318 65017485 -20678269 + L1ME4a LINE L1 5964 6118 -3 2311 98 0 0 chr15 65017532 65017827 -20677927 - AluSc SINE Alu -14 295 1 185 313 78 62 chr15 65018560 65018739 -20677015 + MIR SINE MIR 81 262 0 1835 78 0 4 chr15 65018911 65019141 -20676613 + AluY SINE Alu 75 303 -8 363 96 0 0 chr15 65019145 65019197 -20676557 + MER66A LTR ERV1 287 338 -140 40 0 0 0 chr15 65019197 65019237 -20676517 + AT_rich Low_complexity Low_complexity 1 40 0 366 339 65 45 chr15 65019914 65020159 -20675595 + L3 LINE CR1 254 503 -1074 240 302 23 107 chr15 65020417 65020632 -20675122 + L3 LINE CR1 628 824 -753 584 240 40 0 chr15 65020876 65021026 -20674728 + L1MB8 LINE L1 6010 6165 -13 16962 166 29 16 chr15 65021055 65026266 -20669488 + L1PA14 LINE L1 1 5852 -1747 273 75 0 0 chr15 65026266 65026306 -20669448 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 16962 166 29 16 chr15 65026306 65028070 -20667684 + L1PA14 LINE L1 5852 7590 -9 190 0 0 0 chr15 65028158 65028179 -20667575 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2113 118 0 0 chr15 65028179 65028458 -20667296 - AluSc SINE Alu -30 279 1 316 100 0 0 chr15 65028686 65028736 -20667018 + Alu SINE Alu 253 302 0 975 96 79 34 chr15 65029441 65029619 -20666135 + L1MA5 LINE L1 6115 6300 0 198 0 0 0 chr15 65031652 65031674 -20664080 + (CA)n Simple_repeat Simple_repeat 2 23 0 825 126 84 28 chr15 65031729 65031872 -20663882 + MER7A DNA MER2_type 1 149 -197 195 191 281 0 chr15 65031987 65032046 -20663708 - MIR SINE MIR -64 144 70 262 197 11 45 chr15 65032375 65032448 -20663306 + MIR SINE MIR 44 110 -98 286 216 0 14 chr15 65032758 65032832 -20662922 + L1ME4a LINE L1 6047 6119 -2 26 0 0 0 chr15 65032889 65032915 -20662839 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr15 65033449 65033473 -20662281 + (TAA)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr15 65033544 65033575 -20662179 + AT_rich Low_complexity Low_complexity 1 31 0 383 169 13 26 chr15 65033575 65033652 -20662102 + Charlie5 DNA MER1_type 2549 2624 0 290 289 64 39 chr15 65033654 65033810 -20661944 + MIR SINE MIR 33 192 -70 566 362 37 8 chr15 65038446 65038689 -20657065 + MIR SINE MIR 2 251 -11 6558 179 55 23 chr15 65038813 65039779 -20655975 - Charlie1a DNA MER1_type -1306 1455 427 2401 65 0 0 chr15 65039779 65040070 -20655684 + AluY SINE Alu 1 291 -20 6558 179 55 23 chr15 65040070 65040508 -20655246 - Charlie1a DNA MER1_type -2334 427 5 239 289 141 8 chr15 65040731 65040852 -20654902 - L2 LINE L2 -208 3064 2928 2435 56 0 16 chr15 65041585 65041889 -20653865 + AluY SINE Alu 1 299 -12 5192 171 7 23 chr15 65041904 65042048 -20653706 + L1MB3 LINE L1 5173 5318 -865 2043 109 7 16 chr15 65042048 65042351 -20653403 + AluSx SINE Alu 11 310 -2 5192 171 7 23 chr15 65042351 65043226 -20652528 + L1MB3 LINE L1 5318 6178 -5 254 231 34 122 chr15 65043829 65043976 -20651778 + L2 LINE L2 2889 3022 -250 2153 107 0 39 chr15 65043976 65044285 -20651469 + AluSx SINE Alu 1 297 -15 419 255 203 0 chr15 65045419 65045572 -20650182 - MIR3 SINE MIR -3 205 22 497 229 117 53 chr15 65045940 65046128 -20649626 - MIR SINE MIR -1 261 62 202 220 0 0 chr15 65046190 65046240 -20649514 + (TA)n Simple_repeat Simple_repeat 1 50 0 321 296 201 12 chr15 65046550 65046719 -20649035 - MIR SINE MIR -1 261 61 253 373 45 15 chr15 65047409 65047543 -20648211 + L2 LINE L2 3129 3266 -6 332 329 181 9 chr15 65047727 65047943 -20647811 - MIR SINE MIR -6 256 4 336 324 162 25 chr15 65048096 65048300 -20647454 - MIR SINE MIR -6 256 25 1053 261 134 29 chr15 65048796 65049272 -20646482 + MLT1K LTR MaLR 56 581 -7 562 237 98 78 chr15 65049354 65049459 -20646295 + L2 LINE L2 3008 3109 -204 1724 179 3 23 chr15 65049459 65049487 -20646267 - AluJo SINE Alu -6 306 279 348 24 0 0 chr15 65049487 65049528 -20646226 + (TG)n Simple_repeat Simple_repeat 2 42 0 1724 179 3 23 chr15 65049528 65049807 -20645947 - AluJo SINE Alu -33 279 5 562 237 98 78 chr15 65049807 65049919 -20645835 + L2 LINE L2 3109 3217 -96 2168 112 0 0 chr15 65049919 65050214 -20645540 - AluSx SINE Alu -17 295 1 261 0 0 0 chr15 65050221 65050250 -20645504 + (TTG)n Simple_repeat Simple_repeat 2 30 0 562 237 98 78 chr15 65050250 65050318 -20645436 + L2 LINE L2 3222 3308 -5 274 323 126 20 chr15 65050348 65050546 -20645208 + MIR SINE MIR 25 243 -19 1533 163 54 86 chr15 65050861 65051247 -20644507 + MLT1A2 LTR MaLR 1 374 0 892 121 8 15 chr15 65051295 65051427 -20644327 + FLAM_C SINE Alu 1 131 -2 225 65 0 0 chr15 65051607 65051638 -20644116 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 115 0 43 chr15 65051899 65052222 -20643532 - AluSg SINE Alu -1 309 1 201 317 65 16 chr15 65052348 65052471 -20643283 - MIR3 SINE MIR -44 164 36 329 266 48 24 chr15 65052484 65052608 -20643146 + MER113 DNA MER1_type? 3 129 -392 2208 128 0 0 chr15 65052975 65053280 -20642474 + AluSx SINE Alu 1 305 -7 2366 83 3 10 chr15 65053378 65053680 -20642074 + AluSq SINE Alu 1 300 -13 411 323 69 60 chr15 65054116 65054333 -20641421 - L2 LINE L2 -40 3232 3014 1199 74 0 0 chr15 65054335 65054484 -20641270 - AluSc SINE Alu -4 305 157 902 82 0 8 chr15 65055384 65055518 -20640236 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 1837 144 32 0 chr15 65055518 65055803 -20639951 - AluJb SINE Alu -18 294 1 252 0 0 0 chr15 65055851 65055879 -20639875 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 723 221 0 0 chr15 65055881 65055994 -20639760 - FLAM_A SINE Alu -29 113 1 206 196 82 171 chr15 65056068 65056140 -20639614 - MIR SINE MIR -10 252 200 2469 70 0 0 chr15 65056140 65056439 -20639315 + AluY SINE Alu 1 299 -12 206 196 82 171 chr15 65056439 65056524 -20639230 - MIR SINE MIR -62 200 109 289 281 229 7 chr15 65056629 65056782 -20638972 - MIR SINE MIR -14 248 62 392 238 168 14 chr15 65057087 65057230 -20638524 - MIR SINE MIR -15 247 83 2289 81 13 7 chr15 65057245 65057553 -20638201 + AluY SINE Alu 1 310 -1 268 256 85 12 chr15 65057634 65057716 -20638038 - MIR SINE MIR -74 188 101 638 105 24 16 chr15 65057818 65057942 -20637812 + GA-rich Low_complexity Low_complexity 1 125 0 225 333 56 0 chr15 65058601 65058727 -20637027 - L2 LINE L2 -227 3045 2913 498 347 0 12 chr15 65058901 65059074 -20636680 + MLT1K LTR MaLR 4 174 -414 2243 136 0 0 chr15 65059235 65059545 -20636209 - AluSx SINE Alu -2 310 1 356 197 56 0 chr15 65059581 65059652 -20636102 + MLT1K LTR MaLR 194 268 -320 2067 139 0 0 chr15 65059705 65060000 -20635754 - AluSx SINE Alu -17 295 1 536 255 47 118 chr15 65060007 65060262 -20635492 + MLT1K LTR MaLR 258 494 -94 619 215 6 57 chr15 65060463 65060640 -20635114 - MIR SINE MIR 0 262 95 1344 217 125 76 chr15 65060640 65060745 -20635009 + MLT1F1 LTR MaLR 1 99 -468 2464 61 3 0 chr15 65060745 65061040 -20634714 - AluY SINE Alu -15 296 1 1344 217 125 76 chr15 65061040 65061470 -20634284 + MLT1F1 LTR MaLR 99 567 0 439 293 22 62 chr15 65061470 65061823 -20633931 + MLT1F1-int LTR MaLR 1 453 -918 802 285 9 27 chr15 65061823 65062044 -20633710 - MLT1K LTR MaLR -161 427 211 327 288 22 50 chr15 65062046 65062157 -20633597 + MLT1F1-int LTR MaLR 467 575 -796 2238 108 0 0 chr15 65062157 65062452 -20633302 + AluSx SINE Alu 1 295 -17 327 288 22 50 chr15 65062452 65062479 -20633275 + MLT1F1-int LTR MaLR 575 601 -770 1813 159 39 0 chr15 65062501 65062784 -20632970 + AluSx SINE Alu 6 299 -13 1758 177 10 3 chr15 65063018 65063312 -20632442 + AluJb SINE Alu 2 297 -15 244 405 11 16 chr15 65063322 65063507 -20632247 + MLT1F1-int LTR MaLR 701 884 -487 566 281 72 65 chr15 65063730 65063821 -20631933 + MLT1F1-int LTR MaLR 1057 1146 -225 369 62 0 0 chr15 65063821 65063869 -20631885 + (TG)n Simple_repeat Simple_repeat 2 49 0 566 281 72 65 chr15 65063869 65064083 -20631671 + MLT1F1-int LTR MaLR 1146 1364 -7 1456 207 149 44 chr15 65064090 65064600 -20631154 + MLT1F1 LTR MaLR 1 559 -8 1810 142 13 33 chr15 65064685 65064987 -20630767 + AluJo SINE Alu 1 296 -16 1890 126 11 4 chr15 65064991 65065268 -20630486 + AluSx SINE Alu 2 280 -32 230 0 33 0 chr15 65065297 65065327 -20630427 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 420 261 101 25 chr15 65065362 65065561 -20630193 + L1ME1 LINE L1 5949 6162 -4 37 39 0 0 chr15 65065760 65065811 -20629943 + AT_rich Low_complexity Low_complexity 1 51 0 351 332 45 23 chr15 65066049 65066269 -20629485 - L2 LINE L2 -524 2790 2566 265 29 22 2 chr15 65066553 65066602 -20629152 - AluSp/q SINE Alu 0 303 259 225 354 35 0 chr15 65067065 65067178 -20628576 - MIR SINE MIR -13 249 133 824 191 174 0 chr15 65068641 65068819 -20626935 - MER3 DNA MER1_type 0 209 1 609 218 75 52 chr15 65069807 65069981 -20625773 + MER5A DNA MER1_type 4 181 -8 483 281 72 27 chr15 65072604 65072825 -20622929 - MIR SINE MIR -14 248 18 879 153 21 0 chr15 65073047 65073191 -20622563 - MER5A DNA MER1_type 0 189 43 323 279 95 32 chr15 65073050 65073208 -20622546 + MER5A DNA MER1_type 18 185 -4 * 318 236 55 55 chr15 65074139 65074249 -20621505 + MIR SINE MIR 153 262 0 193 312 128 40 chr15 65074312 65074437 -20621317 - MIR SINE MIR -122 140 5 1750 159 0 60 chr15 65075425 65075740 -20620014 + AluJb SINE Alu 1 296 -16 407 200 0 8 chr15 65075873 65075998 -20619756 + CT-rich Low_complexity Low_complexity 2 125 0 2041 96 51 17 chr15 65077036 65077328 -20618426 + AluSx SINE Alu 1 302 -10 371 307 31 16 chr15 65077366 65077493 -20618261 - L2 LINE L2 -3 3310 3182 331 302 57 6 chr15 65077573 65077732 -20618022 - L2 LINE L2 -135 3178 3012 306 330 90 32 chr15 65077890 65078078 -20617676 + L2 LINE L2 2856 3054 -218 1167 194 0 72 chr15 65078420 65078657 -20617097 + MER58A DNA MER1_type 2 221 -3 2051 137 3 3 chr15 65079309 65079609 -20616145 - AluJo SINE Alu -12 300 1 795 275 174 30 chr15 65079677 65080325 -20615429 + L2 LINE L2 2568 3313 0 672 154 32 8 chr15 65082274 65082397 -20613357 - FLAM_C SINE Alu -7 126 1 251 307 273 11 chr15 65082481 65082657 -20613097 + MIR SINE MIR 20 241 -21 2408 77 0 0 chr15 65083639 65083937 -20611817 + AluSx SINE Alu 1 298 -14 639 190 26 0 chr15 65084267 65084383 -20611371 + MER58B DNA MER1_type 222 340 -1 386 265 77 39 chr15 65084387 65084568 -20611186 - L1MC4 LINE L1 -238 7804 7617 865 252 43 12 chr15 65084596 65084850 -20610904 - L1ME1 LINE L1 -14 6152 5891 306 157 148 61 chr15 65084821 65084936 -20610818 - L1ME LINE L1 -719 5516 5392 * 3219 224 72 71 chr15 65084945 65085028 -20610726 - L1ME LINE L1 -866 5349 5268 2148 133 3 0 chr15 65085028 65085329 -20610425 - AluSx SINE Alu -10 302 1 3219 224 72 71 chr15 65085329 65085509 -20610245 - L1ME LINE L1 -947 5268 5090 1967 109 35 0 chr15 65085509 65085793 -20609961 - AluSx SINE Alu -18 294 1 3219 224 72 71 chr15 65085793 65086258 -20609496 - L1ME LINE L1 -1125 5090 4627 2196 108 3 3 chr15 65086258 65086555 -20609199 + AluSx SINE Alu 1 297 -15 1573 186 22 0 chr15 65086554 65086829 -20608925 - AluJo SINE Alu -31 281 1 * 3219 224 72 71 chr15 65086829 65087235 -20608519 - L1ME LINE L1 -1862 4353 4208 2064 120 0 32 chr15 65087235 65087543 -20608211 - AluSx SINE Alu -13 299 2 3219 224 72 71 chr15 65087543 65087935 -20607819 - L1ME LINE L1 -2007 4208 3818 1026 308 39 29 chr15 65088230 65088749 -20607005 - L1ME LINE L1 -5837 559 36 407 115 16 0 chr15 65089019 65089080 -20606674 - U7 snRNA snRNA -1 62 1 193 365 47 9 chr15 65089198 65089305 -20606449 + MIR SINE MIR 66 176 -86 1542 250 204 10 chr15 65089312 65090218 -20605536 - L2 LINE L2 -20 3293 2213 1893 180 0 0 chr15 65090667 65090978 -20604776 - AluJb SINE Alu -1 311 1 2300 103 0 0 chr15 65090984 65091276 -20604478 - AluSg SINE Alu -18 292 1 2343 57 0 4 chr15 65091444 65091723 -20604031 - AluSc SINE Alu -9 300 23 449 291 0 16 chr15 65091771 65091898 -20603856 - AluSq/x SINE Alu -188 125 1 281 299 28 19 chr15 65092822 65092929 -20602825 - MIR SINE MIR -69 193 86 239 284 37 46 chr15 65093870 65093979 -20601775 + MIR SINE MIR 36 143 -65 24 0 0 0 chr15 65094399 65094423 -20601331 + AT_rich Low_complexity Low_complexity 1 24 0 459 159 109 87 chr15 65095058 65095196 -20600558 + L2 LINE L2 3173 3313 0 261 139 0 0 chr15 65095206 65095249 -20600505 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 98 39 0 chr15 65095682 65095733 -20600021 - L1MB7 LINE L1 -1 6183 6131 189 0 0 0 chr15 65096092 65096113 -20599641 + (T)n Simple_repeat Simple_repeat 1 21 0 220 287 147 53 chr15 65096748 65096898 -20598856 - MIR SINE MIR -1 261 98 368 324 28 9 chr15 65096912 65097020 -20598734 - L2 LINE L2 -5 3267 3158 660 298 51 25 chr15 65097061 65097296 -20598458 - MIR SINE MIR -1 261 21 1913 113 0 0 chr15 65097745 65098002 -20597752 - AluSx SINE Alu -11 301 45 473 280 98 0 chr15 65098162 65098355 -20597399 - L1ME LINE L1 -397 5724 5513 2412 24 14 0 chr15 65098405 65098743 -20597011 + AluYb8 SINE Alu 1 342 0 1827 121 7 21 chr15 65099001 65099291 -20596463 - AluJo SINE Alu -26 286 1 330 189 27 14 chr15 65099291 65099365 -20596389 - MER33 DNA MER1_type -198 126 52 225 97 0 0 chr15 65099371 65099402 -20596352 + MER33 DNA MER1_type 50 80 -244 2816 13 0 0 chr15 65100844 65101151 -20594603 - AluYa5 SINE Alu -4 307 1 533 202 0 0 chr15 65101747 65101841 -20593913 + FLAM_A SINE Alu 35 128 -14 241 222 111 56 chr15 65102818 65102908 -20592846 + L2 LINE L2 3161 3255 -17 14209 125 33 15 chr15 65103781 65106156 -20589598 - Tigger1 DNA MER2_type 0 2418 1 2300 109 3 3 chr15 65106340 65106644 -20589110 + AluSx SINE Alu 1 304 -8 2479 71 0 0 chr15 65107854 65108164 -20587590 - AluY SINE Alu -1 310 1 322 291 0 0 chr15 65108494 65108573 -20587181 - MIR3 SINE MIR -21 187 109 550 293 114 44 chr15 65108593 65108890 -20586864 + L3 LINE CR1 808 1125 -452 2202 92 7 0 chr15 65109124 65109407 -20586347 - AluSp SINE Alu -28 285 1 436 262 186 9 chr15 65109803 65110013 -20585741 - MIR SINE MIR -6 256 10 201 74 0 0 chr15 65110528 65110555 -20585199 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 542 343 63 13 chr15 65111616 65111855 -20583899 - MIR SINE MIR -1 261 11 652 342 68 4 chr15 65112192 65112426 -20583328 + MIR SINE MIR 8 256 -6 187 271 71 47 chr15 65112878 65112963 -20582791 + L3 LINE CR1 1482 1568 -9 300 286 199 35 chr15 65113840 65114127 -20581627 - L1ME4a LINE L1 -42 6079 5746 340 266 65 49 chr15 65114170 65114354 -20581400 - L1ME4a LINE L1 -458 5663 5477 2229 87 49 0 chr15 65114583 65114869 -20580885 + AluSg SINE Alu 1 300 -10 40639 32 24 2 chr15 65114871 65120904 -20574850 + L1PA2 LINE L1 3 6155 0 250 121 103 0 chr15 65121948 65122006 -20573748 - L1ME LINE L1 -480 5684 5621 1749 202 44 23 chr15 65122009 65122669 -20573085 - L1ME LINE L1 -590 5576 4894 2456 69 0 0 chr15 65123036 65123327 -20572427 + AluSg SINE Alu 1 291 -19 189 0 0 0 chr15 65123327 65123348 -20572406 + (TA)n Simple_repeat Simple_repeat 1 21 0 193 22 109 0 chr15 65123412 65123458 -20572296 + (TA)n Simple_repeat Simple_repeat 2 52 0 708 231 36 28 chr15 65123895 65124142 -20571612 + L2 LINE L2 2999 3247 -66 2186 98 7 0 chr15 65124668 65124945 -20570809 - AluSg SINE Alu -31 279 1 24 0 0 0 chr15 65124954 65124978 -20570776 + AT_rich Low_complexity Low_complexity 1 24 0 300 27 0 0 chr15 65125347 65125384 -20570370 + (TG)n Simple_repeat Simple_repeat 2 38 0 2481 60 3 3 chr15 65125532 65125833 -20569921 - AluY SINE Alu -10 301 1 1231 217 22 56 chr15 65126723 65127046 -20568708 - AluJb SINE Alu 0 312 1 2402 39 0 29 chr15 65127429 65127736 -20568018 - AluY SINE Alu -13 298 1 660 209 128 9 chr15 65127809 65128020 -20567734 + MER106A DNA MER1_type 1 236 0 243 353 169 5 chr15 65128935 65129119 -20566635 - MIR SINE MIR 0 262 49 2149 91 17 3 chr15 65129617 65129915 -20565839 + AluY SINE Alu 1 302 -9 1808 121 68 0 chr15 65131353 65131633 -20564121 - AluSx SINE Alu -13 299 1 468 262 107 13 chr15 65132445 65132594 -20563160 + MIR SINE MIR 21 183 -79 2104 131 0 13 chr15 65134898 65135211 -20560543 - AluSq SINE Alu -4 309 1 260 218 0 115 chr15 65136237 65136263 -20559491 + MIR SINE MIR 85 112 -96 2228 115 0 6 chr15 65136263 65136575 -20559179 - AluSx SINE Alu -2 310 1 260 218 0 115 chr15 65136575 65136626 -20559128 + MIR SINE MIR 112 153 -55 2873 226 42 12 chr15 65136733 65137451 -20558303 + L1ME1 LINE L1 5410 6148 -18 399 246 153 0 chr15 65138129 65138247 -20557507 + MIR SINE MIR 10 145 -117 2660 42 0 0 chr15 65138957 65139264 -20556490 - AluY SINE Alu -4 307 1 2306 69 10 3 chr15 65139314 65139605 -20556149 - AluY SINE Alu -18 293 1 360 285 31 80 chr15 65140491 65140877 -20554877 - MLT2C2 LTR ERVL -2 462 96 1265 216 52 26 chr15 65141278 65141662 -20554092 + L1ME2 LINE L1 5751 6144 -20 304 256 32 132 chr15 65141703 65141922 -20553832 + L1MC4 LINE L1 7829 8025 -17 358 246 123 36 chr15 65142122 65142260 -20553494 + MIR SINE MIR 86 235 -27 445 322 101 5 chr15 65143298 65143506 -20552248 - MIR SINE MIR -13 249 22 1129 170 131 29 chr15 65146316 65146622 -20549132 - L1MB4 LINE L1 -17 6163 5827 705 135 74 43 chr15 65146628 65146791 -20548963 + L1MA7 LINE L1 6106 6273 -18 297 0 0 0 chr15 65146798 65146831 -20548923 + (CA)n Simple_repeat Simple_repeat 2 34 0 435 157 114 0 chr15 65146831 65146947 -20548807 + L1MA7 LINE L1 5722 5824 -356 2509 84 0 0 chr15 65147203 65147512 -20548242 - AluSg SINE Alu -1 309 1 266 304 235 9 chr15 65148642 65148757 -20546997 + MIR SINE MIR 8 148 -114 242 229 74 57 chr15 65148941 65149063 -20546691 + MIR SINE MIR 57 180 -82 21 0 0 0 chr15 65149123 65149144 -20546610 + AT_rich Low_complexity Low_complexity 1 21 0 371 317 22 73 chr15 65149255 65149482 -20546272 + MIR SINE MIR 16 230 -32 482 341 68 18 chr15 65149933 65150153 -20545601 - MIR SINE MIR -12 250 20 2062 107 7 0 chr15 65150404 65150684 -20545070 - AluSg SINE Alu -28 282 1 385 187 11 77 chr15 65150684 65150775 -20544979 - MIR SINE MIR -115 147 63 202 236 38 113 chr15 65151361 65151467 -20544287 - MIR SINE MIR -7 255 158 188 242 61 45 chr15 65151904 65151970 -20543784 - MIR SINE MIR -177 85 19 1466 79 60 32 chr15 65153087 65153303 -20542451 - AluSc SINE Alu -5 304 83 2291 117 0 3 chr15 65153552 65153860 -20541894 - AluSq SINE Alu -6 307 1 22 0 0 0 chr15 65153882 65153904 -20541850 + AT_rich Low_complexity Low_complexity 1 22 0 2057 156 3 29 chr15 65154152 65154498 -20541256 + MER1B DNA MER1_type 1 337 0 406 235 43 26 chr15 65154673 65154788 -20540966 + MIR SINE MIR 100 216 -46 537 251 144 12 chr15 65155198 65155365 -20540389 - MIR SINE MIR -69 193 5 452 289 84 18 chr15 65156521 65156687 -20539067 + MIR SINE MIR 12 188 -74 1321 200 48 4 chr15 65156687 65156957 -20538797 - Tigger3(Golem) DNA MER2_type -2747 282 1 421 275 93 46 chr15 65157007 65157307 -20538447 + L2 LINE L2 2740 3049 -264 25 0 0 0 chr15 65157658 65157683 -20538071 + AT_rich Low_complexity Low_complexity 1 25 0 1518 162 71 40 chr15 65157945 65158241 -20537513 - AluJo SINE Alu -3 309 5 256 183 202 19 chr15 65158531 65158635 -20537119 + MER5C DNA MER1_type 201 323 -1 265 241 17 0 chr15 65159389 65159447 -20536307 + C-rich Low_complexity Low_complexity 1 59 0 24 32 0 0 chr15 65159768 65159799 -20535955 + AT_rich Low_complexity Low_complexity 1 31 0 3375 124 29 19 chr15 65159812 65160334 -20535420 - MER1A DNA MER1_type 0 527 1 267 93 0 0 chr15 65160599 65160642 -20535112 + (A)n Simple_repeat Simple_repeat 1 43 0 1249 169 97 20 chr15 65160669 65160917 -20534837 - AluJo SINE Alu -45 267 1 24 0 0 0 chr15 65160917 65160941 -20534813 + AT_rich Low_complexity Low_complexity 1 24 0 815 183 5 86 chr15 65161398 65161522 -20534232 - MER5B DNA MER1_type 0 178 72 2493 75 7 0 chr15 65161522 65161828 -20533926 - AluSq SINE Alu -5 308 1 815 183 5 86 chr15 65161828 65161889 -20533865 - MER5B DNA MER1_type -106 72 8 26 0 0 0 chr15 65162369 65162395 -20533359 + AT_rich Low_complexity Low_complexity 1 26 0 503 319 60 6 chr15 65162480 65162662 -20533092 + MIR SINE MIR 61 252 -10 2232 98 0 0 chr15 65162753 65163040 -20532714 + AluSx SINE Alu 1 287 -25 288 0 0 0 chr15 65163045 65163077 -20532677 + (TA)n Simple_repeat Simple_repeat 2 33 0 2226 97 0 54 chr15 65163153 65163484 -20532270 - AluSq SINE Alu 0 313 1 196 306 66 0 chr15 65163499 65163589 -20532165 - MIR SINE MIR -71 137 35 225 0 0 0 chr15 65163800 65163825 -20531929 + (T)n Simple_repeat Simple_repeat 1 25 0 201 329 101 13 chr15 65164120 65164199 -20531555 + MIR SINE MIR 2 87 -175 439 249 55 97 chr15 65164214 65164431 -20531323 - MIR SINE MIR -8 254 47 316 265 82 0 chr15 65164459 65164557 -20531197 + MIR SINE MIR 88 193 -69 1161 212 82 20 chr15 65164697 65165102 -20530652 - L1MC4 LINE L1 0 8042 7613 234 306 72 27 chr15 65165264 65165375 -20530379 - L2 LINE L2 -11 3261 3146 215 292 62 52 chr15 65165989 65166181 -20529573 + L3b LINE CR1 1213 1406 -177 1523 182 84 4 chr15 65167169 65167444 -20528310 + AluJb SINE Alu 2 298 -14 245 319 187 30 chr15 65169433 65169599 -20526155 - L2 LINE L2 -5 3267 3076 342 280 165 56 chr15 65171074 65171413 -20524341 - L2 LINE L2 -123 3190 2815 246 356 47 27 chr15 65171601 65171750 -20524004 - MIR SINE MIR -107 155 4 185 270 0 0 chr15 65171861 65171898 -20523856 - L3 LINE CR1 -64 1513 1477 711 154 0 46 chr15 65174499 65174629 -20521125 + FLAM_C SINE Alu 1 124 -9 357 228 25 13 chr15 65175226 65175305 -20520449 + L2 LINE L2 3186 3265 -7 2098 130 0 7 chr15 65175387 65175688 -20520066 - AluY SINE Alu -12 299 1 485 260 20 81 chr15 65175704 65175841 -20519913 + HAL1 LINE L1 2048 2165 -342 571 146 0 100 chr15 65175841 65175873 -20519881 - L1PB4 LINE L1 -6 6150 6116 2442 78 0 0 chr15 65175873 65176166 -20519588 - AluSc SINE Alu -16 293 1 571 146 0 100 chr15 65176166 65176263 -20519491 - L1PB4 LINE L1 -40 6116 6034 485 260 20 81 chr15 65176263 65176371 -20519383 + HAL1 LINE L1 2165 2278 -229 360 0 0 0 chr15 65176702 65176742 -20519012 + (TG)n Simple_repeat Simple_repeat 2 41 0 1610 165 35 57 chr15 65176761 65177077 -20518677 + AluJb SINE Alu 1 309 -3 215 277 108 12 chr15 65177381 65177464 -20518290 + MIR SINE MIR 58 148 -114 190 342 18 27 chr15 65177915 65178026 -20517728 - L2 LINE L2 -975 2339 2230 2143 98 57 0 chr15 65178200 65178496 -20517258 - AluSq SINE Alu 0 313 1 2442 67 3 0 chr15 65178556 65178856 -20516898 + AluY SINE Alu 1 301 -10 2177 108 0 3 chr15 65178929 65179224 -20516530 + AluSx SINE Alu 1 294 -18 588 173 274 0 chr15 65179350 65179518 -20516236 - MER20 DNA MER1_type 0 219 6 182 346 101 0 chr15 65179759 65179918 -20515836 - L2 LINE L2 -1893 1421 1247 362 317 91 29 chr15 65180040 65180248 -20515506 - L1ME4a LINE L1 -225 5896 5676 355 223 345 9 chr15 65180315 65180535 -20515219 + L2 LINE L2 3020 3313 0 2705 72 0 0 chr15 65181430 65181779 -20513975 - L1PA7 LINE L1 0 6154 5806 1773 101 4 12 chr15 65182058 65182335 -20513419 + AluSx SINE Alu 39 313 0 220 349 0 0 chr15 65182746 65182809 -20512945 - MIR SINE MIR -68 140 78 205 179 26 0 chr15 65184115 65184154 -20511600 + (TG)n Simple_repeat Simple_repeat 2 41 0 2151 47 4 0 chr15 65184210 65184464 -20511290 + AluY SINE Alu 40 294 -17 1726 166 31 3 chr15 65184471 65184761 -20510993 + AluJb SINE Alu 1 298 -14 1563 186 4 4 chr15 65186751 65187020 -20508734 + AluJo SINE Alu 5 273 -39 2318 91 14 0 chr15 65187093 65187390 -20508364 - AluSp SINE Alu -11 302 2 1898 149 9 50 chr15 65193647 65193970 -20501784 - AluSq SINE Alu -3 310 1 2221 117 10 7 chr15 65194110 65194417 -20501337 + AluSx SINE Alu 1 308 -4 1827 154 22 0 chr15 65194434 65194746 -20501008 - MER57A LTR ERV1 -4 399 81 1977 136 85 106 chr15 65195000 65195587 -20500167 - L1MB7 LINE L1 -1 6183 5609 2051 145 7 3 chr15 65195660 65195970 -20499784 - AluSx SINE Alu -1 311 1 861 202 68 12 chr15 65197244 65197492 -20498262 - MER58B DNA MER1_type 0 341 80 1204 150 186 4 chr15 65197497 65197750 -20498004 + AluJb SINE Alu 2 300 -2 278 213 0 67 chr15 65198855 65198930 -20496824 + MIR SINE MIR 187 256 -6 427 286 50 21 chr15 65199091 65199231 -20496523 - MIR3 SINE MIR -15 193 50 206 286 0 48 chr15 65199326 65199389 -20496365 + MER5A DNA MER1_type 130 189 0 189 0 0 0 chr15 65200067 65200088 -20495666 + (T)n Simple_repeat Simple_repeat 1 21 0 249 229 205 0 chr15 65200935 65201018 -20494736 + MIR SINE MIR 85 185 -23 2085 111 0 7 chr15 65201070 65201358 -20494396 + AluSx SINE Alu 23 308 -4 719 128 56 24 chr15 65201421 65201546 -20494208 - FLAM_C SINE Alu -7 136 8 23 0 0 0 chr15 65201550 65201573 -20494181 + AT_rich Low_complexity Low_complexity 1 23 0 282 292 129 18 chr15 65201853 65202024 -20493730 + MIR SINE MIR 6 195 -67 299 286 183 8 chr15 65202257 65202383 -20493371 - L2 LINE L2 -4 3309 3162 2025 142 7 3 chr15 65203110 65203419 -20492335 - AluJo SINE Alu -2 310 1 356 345 103 28 chr15 65203949 65204239 -20491515 + L2 LINE L2 2445 2756 -558 235 313 36 48 chr15 65204519 65204602 -20491152 + L2 LINE L2 3223 3304 -9 248 210 0 0 chr15 65204812 65204874 -20490880 + L1MA10 LINE L1 6271 6332 -2 2147 126 0 10 chr15 65205072 65205381 -20490373 + AluSx SINE Alu 7 312 0 486 314 141 75 chr15 65205737 65205927 -20489827 + L3 LINE CR1 367 543 -1034 2457 55 0 0 chr15 65205927 65206219 -20489535 + AluY SINE Alu 1 292 -19 198 0 0 0 chr15 65206219 65206241 -20489513 + (TA)n Simple_repeat Simple_repeat 2 23 0 486 314 141 75 chr15 65206241 65206632 -20489122 + L3 LINE CR1 542 987 -590 242 274 158 48 chr15 65206719 65206865 -20488889 + L3 LINE CR1 1171 1332 -245 470 284 108 10 chr15 65207248 65207442 -20488312 + MIR SINE MIR 48 260 -2 330 401 16 6 chr15 65208355 65208537 -20487217 - MIR3 SINE MIR -13 195 12 2185 101 10 3 chr15 65209771 65210067 -20485687 - AluSc SINE Alu -11 298 1 205 220 0 40 chr15 65211673 65211723 -20484031 + GA-rich Low_complexity Low_complexity 3 50 0 213 39 0 0 chr15 65211870 65211896 -20483858 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 279 269 20 34 chr15 65213008 65213157 -20482597 + (TCTCTG)n Simple_repeat Simple_repeat 3 149 0 857 131 0 39 chr15 65214302 65214432 -20481322 + FLAM_C SINE Alu 1 125 -18 23 0 0 0 chr15 65214863 65214886 -20480868 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr15 65216157 65216198 -20479556 + (TG)n Simple_repeat Simple_repeat 2 42 0 3856 188 89 18 chr15 65216232 65216750 -20479004 - Charlie1a DNA MER1_type -1306 1455 975 1914 142 0 0 chr15 65216750 65217024 -20478730 - AluSx SINE Alu -38 274 1 3856 188 89 18 chr15 65217024 65217046 -20478708 - Charlie1a DNA MER1_type -1786 975 956 2155 114 0 10 chr15 65217046 65217336 -20478418 - AluSg SINE Alu -23 287 1 3856 188 89 18 chr15 65217336 65217849 -20477905 - Charlie1a DNA MER1_type -1805 956 326 895 187 187 0 chr15 65217848 65218051 -20477703 - Charlie1a DNA MER1_type -1213 242 2 * 2266 118 0 0 chr15 65219015 65219312 -20476442 - AluSx SINE Alu -15 297 1 2319 85 3 9 chr15 65219860 65220188 -20475566 + L1PA10 LINE L1 5832 6157 -11 299 253 0 0 chr15 65220337 65220416 -20475338 + L1MA10 LINE L1 6253 6331 -3 2393 106 0 0 chr15 65220639 65220950 -20474804 - AluSx SINE Alu -1 311 1 215 340 137 24 chr15 65221180 65221392 -20474362 - L2 LINE L2 -211 3061 2826 210 71 0 0 chr15 65221601 65221629 -20474125 + (T)n Simple_repeat Simple_repeat 1 28 0 431 223 274 19 chr15 65221981 65222138 -20473616 - MIR SINE MIR -59 203 7 201 318 38 81 chr15 65223443 65223532 -20472222 + L2 LINE L2 2717 2808 -506 3716 151 48 5 chr15 65223532 65224203 -20471551 - L1MA6 LINE L1 0 6300 5601 201 318 38 81 chr15 65224203 65224324 -20471430 + L2 LINE L2 2808 2918 -396 2098 65 4 14 chr15 65225242 65225518 -20470236 + AluSq SINE Alu 1 273 -40 4171 140 34 24 chr15 65225739 65226505 -20469249 - L1MB3 LINE L1 -1 6182 5409 21 57 0 0 chr15 65228351 65228386 -20467368 + AT_rich Low_complexity Low_complexity 1 35 0 1597 165 0 19 chr15 65228420 65228686 -20467068 + AluJo SINE Alu 6 266 -46 227 219 41 55 chr15 65228697 65228770 -20466984 + GA-rich Low_complexity Low_complexity 2 73 0 255 333 102 0 chr15 65228793 65228901 -20466853 + MIR SINE MIR 30 148 -60 215 356 76 0 chr15 65228965 65229083 -20466671 - L2 LINE L2 -8 3305 3179 1603 136 0 0 chr15 65229269 65229505 -20466249 - AluJb SINE Alu -11 301 66 521 139 9 0 chr15 65229651 65229759 -20465995 + (CA)n Simple_repeat Simple_repeat 2 110 0 2835 176 25 34 chr15 65230238 65230949 -20464805 + L1MB7 LINE L1 5445 6175 -8 204 40 0 0 chr15 65230972 65230997 -20464757 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 333 0 0 0 chr15 65230996 65231033 -20464721 + (CA)n Simple_repeat Simple_repeat 1 37 0 1046 164 4 44 chr15 65231033 65231258 -20464496 + L1MD3 LINE L1 7731 7946 -49 25 31 0 0 chr15 65231334 65231366 -20464388 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 65231521 65231549 -20464205 + AT_rich Low_complexity Low_complexity 1 28 0 1953 238 38 20 chr15 65231560 65232060 -20463694 - LTR40a LTR ERVL -10 509 1 2240 92 0 7 chr15 65232351 65232643 -20463111 - AluSc SINE Alu -18 291 2 2603 58 0 3 chr15 65233005 65233317 -20462437 - AluY SINE Alu 0 311 1 23 0 0 0 chr15 65233996 65234019 -20461735 + AT_rich Low_complexity Low_complexity 1 23 0 2762 218 67 44 chr15 65234051 65236092 -20459662 - L1ME1 LINE L1 -5 6161 4169 2068 133 3 0 chr15 65236092 65236392 -20459362 - AluSq SINE Alu -12 301 1 2762 218 67 44 chr15 65236392 65237362 -20458392 - L1ME1 LINE L1 -1997 4169 2921 1863 82 68 41 chr15 65237362 65237655 -20458099 - AluY SINE Alu -10 301 1 2762 218 67 44 chr15 65237655 65238058 -20457696 - L1ME1 LINE L1 -3245 2921 2529 23 0 0 0 chr15 65238121 65238144 -20457610 + AT_rich Low_complexity Low_complexity 1 23 0 1799 135 14 11 chr15 65238242 65238523 -20457231 - AluSx SINE Alu -19 293 12 901 180 6 34 chr15 65239242 65239420 -20456334 - MER5B DNA MER1_type -4 174 2 239 301 72 59 chr15 65239547 65239700 -20456054 + MIR SINE MIR 37 191 -71 2125 88 0 4 chr15 65240641 65240915 -20454839 + AluSg SINE Alu 1 273 -37 549 0 0 0 chr15 65241024 65241085 -20454669 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 2140 88 0 25 chr15 65241086 65241370 -20454384 - AluY SINE Alu -34 277 1 323 356 47 39 chr15 65241739 65241972 -20453782 - MIR SINE MIR -11 251 17 456 335 221 35 chr15 65243107 65243704 -20452050 - L3 LINE CR1 -8 1569 862 217 182 0 23 chr15 65243704 65243748 -20452006 - L3 LINE CR1 -858 719 677 1190 124 0 52 chr15 65243802 65243996 -20451758 - AluSg/x SINE Alu -6 306 123 1576 105 0 67 chr15 65244109 65244347 -20451407 + AluSc SINE Alu 1 222 -87 1113 207 38 0 chr15 65244471 65244684 -20451070 + AluJb SINE Alu 87 307 -5 189 132 0 0 chr15 65245290 65245328 -20450426 + (T)n Simple_repeat Simple_repeat 1 38 0 716 119 0 2 chr15 65245733 65245995 -20449759 + AluSx SINE Alu 1 308 -2 2143 116 10 7 chr15 65246657 65246960 -20448794 + AluSq SINE Alu 1 304 -9 2392 48 58 0 chr15 65247203 65247495 -20448259 + AluY SINE Alu 1 309 -2 27 0 0 0 chr15 65247557 65247584 -20448170 + AT_rich Low_complexity Low_complexity 1 27 0 1834 160 42 3 chr15 65248108 65248396 -20447358 + AluJb SINE Alu 1 299 -13 464 382 68 1 chr15 65248626 65248860 -20446894 - MIR SINE MIR -7 255 6 1879 172 0 3 chr15 65249688 65249985 -20445769 + AluJo SINE Alu 1 296 -16 2281 92 48 0 chr15 65250028 65250323 -20445431 + AluSx SINE Alu 1 309 -3 277 278 38 67 chr15 65250743 65250952 -20444802 - L1MC4 LINE L1 -1 8041 7839 234 222 16 0 chr15 65250990 65251053 -20444701 - L1ME2 LINE L1 -14 6150 6087 582 160 0 0 chr15 65251067 65251161 -20444593 - U6 snRNA snRNA -13 94 1 395 229 30 69 chr15 65251232 65251363 -20444391 - L1ME2 LINE L1 -126 6038 5913 566 216 48 0 chr15 65251365 65251514 -20444240 - L1P5 LINE L1 -485 5669 5514 1577 204 82 32 chr15 65252115 65252555 -20443199 - MLT1C LTR MaLR 0 467 6 493 156 0 0 chr15 65253471 65253548 -20442206 - AluSg/x SINE Alu -99 211 135 1895 142 26 29 chr15 65254077 65254387 -20441367 + AluJb SINE Alu 1 309 -3 2093 131 7 0 chr15 65254442 65254740 -20441014 + AluSx SINE Alu 1 300 -12 514 309 7 7 chr15 65255418 65255554 -20440200 + MIR SINE MIR 6 141 -121 2389 67 0 7 chr15 65255981 65256280 -20439474 - AluY SINE Alu -14 297 1 1406 146 32 0 chr15 65256460 65256680 -20439074 + AluJo SINE Alu 60 286 -26 552 225 72 0 chr15 65256794 65256905 -20438849 - L2 LINE L2 0 3272 3154 268 234 31 16 chr15 65257003 65257067 -20438687 - MIR SINE MIR -111 151 87 21 0 0 0 chr15 65257240 65257261 -20438493 + AT_rich Low_complexity Low_complexity 1 21 0 317 206 43 109 chr15 65257487 65257579 -20438175 - MIR SINE MIR -72 136 51 34 24 0 0 chr15 65258321 65258362 -20437392 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr15 65259330 65259354 -20436400 + AT_rich Low_complexity Low_complexity 1 24 0 2207 130 0 0 chr15 65259600 65259907 -20435847 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr15 65260942 65260963 -20434791 + AT_rich Low_complexity Low_complexity 1 21 0 2159 95 3 11 chr15 65260964 65261248 -20434506 + AluSp SINE Alu 1 282 -31 2090 140 0 13 chr15 65262553 65262868 -20432886 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr15 65263004 65263032 -20432722 + AT_rich Low_complexity Low_complexity 1 28 0 578 146 0 0 chr15 65264448 65264530 -20431224 + AluJ/FLAM SINE Alu 4 85 -227 2166 143 0 7 chr15 65264867 65265175 -20430579 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr15 65265469 65265491 -20430263 + AT_rich Low_complexity Low_complexity 1 22 0 7184 41 19 0 chr15 65265491 65266438 -20429316 - L1PA6 LINE L1 -14 6140 5187 856 199 0 0 chr15 65266492 65266662 -20429092 - AluJb SINE Alu 0 306 137 250 282 49 55 chr15 65266670 65266833 -20428921 + L2 LINE L2 1829 1990 -1324 199 385 96 0 chr15 65267620 65267703 -20428051 - MIR SINE MIR -102 106 16 416 311 186 0 chr15 65268240 65268423 -20427331 + L3 LINE CR1 1327 1543 -34 2184 119 0 3 chr15 65268609 65268903 -20426851 + AluSx SINE Alu 1 293 -19 2061 126 7 13 chr15 65268905 65269215 -20426539 + AluSg SINE Alu 1 308 -2 592 312 91 9 chr15 65269342 65269563 -20426191 - MIR SINE MIR -11 251 13 27 0 0 0 chr15 65269793 65269820 -20425934 + AT_rich Low_complexity Low_complexity 1 27 0 622 148 64 163 chr15 65270036 65270319 -20425435 - L1MC4 LINE L1 0 8042 7788 676 228 112 0 chr15 65270418 65270624 -20425130 - L1MC4 LINE L1 -249 7793 7565 303 177 0 0 chr15 65270638 65270700 -20425054 + L1MC4 LINE L1 7536 7597 -445 1082 153 18 0 chr15 65271238 65271408 -20424346 + AluJb SINE Alu 135 307 -5 21 0 0 0 chr15 65271587 65271608 -20424146 + AT_rich Low_complexity Low_complexity 1 21 0 343 239 211 14 chr15 65272607 65272749 -20423005 + MIR SINE MIR 71 240 -22 2409 71 0 43 chr15 65273616 65273940 -20421814 - AluY SINE Alu -1 310 1 517 120 87 0 chr15 65274150 65274242 -20421512 + Tigger4(Zombi) DNA MER2_type 1 100 -2631 1035 124 75 0 chr15 65274254 65274440 -20421314 + Tigger4(Zombi) DNA MER2_type 2526 2725 -6 245 167 0 33 chr15 65274767 65274827 -20420927 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 268 398 108 8 chr15 65275454 65275713 -20420041 - L2 LINE L2 -8 3264 2980 364 323 132 47 chr15 65275806 65275868 -20419886 - L2 LINE L2 -618 2696 2641 2255 96 0 3 chr15 65275868 65276160 -20419594 - AluSg SINE Alu -19 291 1 364 323 132 47 chr15 65276160 65276629 -20419125 - L2 LINE L2 -673 2641 2120 2028 67 57 60 chr15 65277597 65277897 -20417857 - AluY SINE Alu -12 299 1 2091 117 0 38 chr15 65278529 65278845 -20416909 + AluSx SINE Alu 1 304 -8 2164 115 3 10 chr15 65278907 65279212 -20416542 + AluSg SINE Alu 1 303 -7 878 136 0 0 chr15 65280532 65280657 -20415097 + FLAM_C SINE Alu 1 125 -18 2365 98 0 0 chr15 65280762 65281067 -20414687 - AluSx SINE Alu -7 305 1 324 239 230 18 chr15 65281499 65281612 -20414142 - MIR3 SINE MIR -27 181 45 2270 84 3 0 chr15 65282616 65282900 -20412854 - AluSp SINE Alu -12 301 17 2190 92 3 16 chr15 65283412 65283717 -20412037 - AluSg SINE Alu -9 301 1 1614 135 82 8 chr15 65284231 65284498 -20411256 + AluJo SINE Alu 1 287 -25 349 281 256 5 chr15 65284998 65285197 -20410557 - MIR SINE MIR -6 256 8 381 22 0 0 chr15 65285410 65285456 -20410298 + (TG)n Simple_repeat Simple_repeat 2 47 0 868 245 45 41 chr15 65285463 65285732 -20410022 - AluJo SINE Alu -42 270 1 318 277 101 0 chr15 65285763 65285882 -20409872 - L1ME4a LINE L1 -25 6096 5966 423 132 0 0 chr15 65286094 65286162 -20409592 + (TG)n Simple_repeat Simple_repeat 1 68 0 224 239 0 0 chr15 65286164 65286210 -20409544 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 214 217 267 0 chr15 65287114 65287174 -20408580 - MIR3 SINE MIR -52 156 81 1755 151 42 11 chr15 65287717 65288002 -20407752 + AluJo SINE Alu 5 298 -14 24 0 0 0 chr15 65288286 65288310 -20407444 + AT_rich Low_complexity Low_complexity 1 24 0 354 291 33 67 chr15 65290627 65290722 -20405032 + MIR SINE MIR 30 116 -146 670 267 72 36 chr15 65290722 65290973 -20404781 + MIR SINE MIR 2 261 -1 354 291 33 67 chr15 65290973 65291061 -20404693 + MIR SINE MIR 116 206 -56 180 254 0 18 chr15 65291581 65291636 -20404118 - MIR3 SINE MIR -149 59 6 677 219 29 73 chr15 65292227 65292432 -20403322 - MIR SINE MIR 0 262 67 357 82 0 0 chr15 65292434 65292483 -20403271 + (TGG)n Simple_repeat Simple_repeat 3 51 0 261 257 43 29 chr15 65292483 65292553 -20403201 - MIR SINE MIR -183 79 9 303 213 0 40 chr15 65293230 65293305 -20402449 + GA-rich Low_complexity Low_complexity 6 77 0 2056 174 6 8 chr15 65293621 65293977 -20401777 + MER47A DNA MER2_type 12 366 0 1536 213 57 0 chr15 65294263 65294577 -20401177 - MER58B DNA MER1_type 0 341 10 664 188 23 30 chr15 65294914 65295047 -20400707 - FLAM_A SINE Alu 0 133 2 2174 126 3 0 chr15 65295078 65295380 -20400374 + AluSx SINE Alu 1 303 -9 1012 304 67 26 chr15 65296047 65296537 -20399217 - Charlie7 DNA MER1_type -2102 510 1 238 217 191 61 chr15 65296607 65296722 -20399032 + L1MEd LINE L1 18 147 -5972 435 297 157 83 chr15 65296751 65297222 -20398532 + L1MEd LINE L1 263 768 -5351 2463 74 0 0 chr15 65297244 65297540 -20398214 + AluSg SINE Alu 1 296 -14 200 179 26 0 chr15 65297933 65297972 -20397782 - L2 LINE L2 -10 3303 3264 2194 111 10 0 chr15 65298141 65298439 -20397315 + AluSx SINE Alu 1 301 -11 1023 200 74 33 chr15 65298463 65298618 -20397136 - MER58A DNA MER1_type -2196 224 56 2401 97 0 0 chr15 65298618 65298926 -20396828 + AluSx SINE Alu 1 308 -4 1023 200 74 33 chr15 65298926 65298985 -20396769 - MER58A DNA MER1_type -2364 56 1 2088 119 3 3 chr15 65299118 65299413 -20396341 + AluSq SINE Alu 2 296 -17 2248 107 0 13 chr15 65301389 65301698 -20394056 - AluSx SINE Alu -7 305 1 2026 101 0 11 chr15 65301920 65302196 -20393558 + AluSg SINE Alu 1 273 -37 288 0 0 0 chr15 65302196 65302228 -20393526 + (CA)n Simple_repeat Simple_repeat 1 32 0 2155 122 0 3 chr15 65303516 65303811 -20391943 + AluSx SINE Alu 1 294 -18 195 129 0 0 chr15 65303811 65303842 -20391912 + (TA)n Simple_repeat Simple_repeat 1 31 0 33 0 0 0 chr15 65305560 65305593 -20390161 + AT_rich Low_complexity Low_complexity 1 33 0 240 298 84 38 chr15 65306377 65306508 -20389246 - MIR3 SINE MIR -13 195 59 866 199 84 0 chr15 65308797 65308963 -20386791 - MER5A DNA MER1_type -8 181 2 263 307 79 8 chr15 65309024 65309151 -20386603 + MER102b DNA MER1_type 38 173 -168 191 155 0 181 chr15 65309184 65309300 -20386454 + L2 LINE L2 3113 3207 -106 411 185 34 103 chr15 65309373 65309519 -20386235 + MER102b DNA MER1_type 206 341 0 2047 135 0 0 chr15 65309616 65309959 -20385795 - AluSx SINE Alu 0 343 1 220 378 160 6 chr15 65310119 65310431 -20385323 - L2 LINE L2 -52 3220 2861 1323 89 0 0 chr15 65310982 65311151 -20384603 - AluSg/x SINE Alu -7 305 137 420 140 23 246 chr15 65311714 65311822 -20383932 + MER5A DNA MER1_type 56 114 -75 1843 148 3 7 chr15 65311822 65312105 -20383649 - AluJo SINE Alu -30 282 1 420 140 23 246 chr15 65312105 65312167 -20383587 + MER5A DNA MER1_type 114 188 -1 2095 143 0 3 chr15 65312515 65312815 -20382939 - AluSx SINE Alu -13 299 1 782 236 70 0 chr15 65312856 65313055 -20382699 + MIR SINE MIR 8 220 -42 189 0 0 0 chr15 65313535 65313556 -20382198 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2819 134 9 38 chr15 65313942 65314388 -20381366 - Tigger2a DNA MER2_type -1 433 1 232 234 180 47 chr15 65314471 65314599 -20381155 + MER5A DNA MER1_type 31 175 -14 2317 92 0 0 chr15 65314658 65314952 -20380802 + AluSg SINE Alu 1 294 -16 1260 261 57 43 chr15 65315006 65315516 -20380238 - L1MC4a LINE L1 -1753 6055 5539 240 35 0 0 chr15 65316667 65316696 -20379058 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1889 156 13 0 chr15 65318590 65318891 -20376863 + AluJb SINE Alu 1 305 -7 455 339 64 14 chr15 65319347 65319565 -20376189 + MIR SINE MIR 34 262 0 1934 113 77 0 chr15 65319620 65319894 -20375860 + AluSx SINE Alu 1 295 -17 1421 188 7 38 chr15 65319917 65320210 -20375544 + AluJo SINE Alu 1 284 -28 279 0 0 0 chr15 65320227 65320258 -20375496 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 265 0 0 chr15 65320757 65320806 -20374948 - L2 LINE L2 0 3313 3265 182 296 19 0 chr15 65321221 65321275 -20374479 + MIR SINE MIR 92 146 -116 332 167 0 0 chr15 65321727 65321781 -20373973 - L1MB8 LINE L1 -5 6173 6120 363 183 26 0 chr15 65321781 65321856 -20373898 - L1M4 LINE L1 -572 5592 5527 22 56 0 0 chr15 65322710 65322746 -20373008 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr15 65325375 65325412 -20370342 + AT_rich Low_complexity Low_complexity 1 37 0 259 344 56 8 chr15 65327945 65328070 -20367684 - MIR SINE MIR -76 186 56 291 358 89 0 chr15 65328400 65328523 -20367231 - L2 LINE L2 -5 3267 3134 29 0 0 0 chr15 65328804 65328833 -20366921 + AT_rich Low_complexity Low_complexity 1 29 0 273 293 203 51 chr15 65328851 65328984 -20366770 - L2 LINE L2 -639 2675 2564 1743 134 0 56 chr15 65328984 65329289 -20366465 + AluSc SINE Alu 1 288 -21 273 293 203 51 chr15 65329289 65329621 -20366133 - L2 LINE L2 -750 2564 2284 2200 103 3 31 chr15 65329621 65329942 -20365812 + AluSp SINE Alu 1 312 -1 273 293 203 51 chr15 65329942 65330243 -20365511 - L2 LINE L2 -1030 2284 1791 1996 143 7 13 chr15 65330964 65331272 -20364482 - AluSx SINE Alu -6 306 1 487 239 156 38 chr15 65331348 65331611 -20364143 - L1MC5 LINE L1 -430 7531 7238 1236 197 66 89 chr15 65331629 65331766 -20363988 - L1MC5 LINE L1 -831 6977 6838 2102 130 7 3 chr15 65331766 65332066 -20363688 + AluSx SINE Alu 1 301 -11 1236 197 66 89 chr15 65332066 65332531 -20363223 - L1MC5 LINE L1 -970 6838 6560 577 295 49 16 chr15 65333480 65333720 -20362034 - MIR SINE MIR -15 247 3 655 205 0 0 chr15 65333852 65333969 -20361785 - FLAM_A SINE Alu -16 117 1 1933 119 0 0 chr15 65334170 65334431 -20361323 + AluSx SINE Alu 44 304 -8 541 272 28 22 chr15 65334551 65334731 -20361023 + MIR SINE MIR 41 221 -41 239 254 175 8 chr15 65334833 65334959 -20360795 + MLT2C1 LTR ERVL 51 197 -200 * 336 135 189 36 chr15 65334849 65334960 -20360794 + MLT1E3 LTR MaLR 58 204 -420 1128 92 0 13 chr15 65334962 65335115 -20360639 + AluSq/x SINE Alu 1 151 -161 245 53 53 0 chr15 65335217 65335255 -20360499 + CT-rich Low_complexity Low_complexity 1 40 0 321 300 18 18 chr15 65335255 65335365 -20360389 - L1M4 LINE L1 -2963 3183 3074 197 61 61 20 chr15 65336772 65336821 -20358933 + (TA)n Simple_repeat Simple_repeat 1 51 0 410 238 40 0 chr15 65336922 65337023 -20358731 - MLT1J LTR MaLR -299 212 108 439 250 70 19 chr15 65337222 65337378 -20358376 - MIR SINE MIR -34 228 65 725 150 8 0 chr15 65337378 65337511 -20358243 + GA-rich Low_complexity Low_complexity 2 135 0 231 261 34 45 chr15 65337951 65338039 -20357715 - MER5B DNA MER1_type -2 176 90 871 233 120 21 chr15 65338067 65338331 -20357423 - MER77 LTR ERV1 -6 599 336 567 129 32 11 chr15 65338332 65338425 -20357329 + AluJ/FLAM SINE Alu 3 97 -215 2156 119 10 3 chr15 65338441 65338736 -20357018 + AluSg SINE Alu 1 297 -13 1182 139 16 0 chr15 65339872 65340059 -20355695 - AluSg/x SINE Alu -1 311 122 2240 108 13 0 chr15 65340079 65340385 -20355369 - AluSx SINE Alu -2 310 1 1742 120 113 11 chr15 65341002 65341277 -20354477 - AluSg SINE Alu -7 303 1 213 324 101 27 chr15 65341448 65341596 -20354158 - MIR SINE MIR -74 188 30 461 119 0 0 chr15 65342721 65342788 -20352966 + AluS SINE Alu 2 68 -245 496 202 20 0 chr15 65342793 65342892 -20352862 - Charlie4 DNA MER1_type -1857 104 4 1348 190 75 12 chr15 65343947 65344324 -20351430 + MLT1E2 LTR MaLR 192 626 0 195 232 81 71 chr15 65344427 65344463 -20351291 + L2 LINE L2 3150 3184 -88 2540 81 0 0 chr15 65344463 65344772 -20350982 - AluY SINE Alu -2 309 1 195 232 81 71 chr15 65344772 65344834 -20350920 + L2 LINE L2 3184 3249 -23 941 229 136 90 chr15 65348770 65349253 -20346501 + MLT2B2 LTR ERVL 15 469 -46 295 359 50 0 chr15 65352344 65352503 -20343251 - MIR SINE MIR -71 191 25 353 262 7 27 chr15 65352714 65352863 -20342891 + (TTA)n Simple_repeat Simple_repeat 1 146 0 698 299 59 45 chr15 65353137 65353666 -20342088 - HAL1b LINE L1 -744 604 69 1620 86 179 4 chr15 65353872 65354129 -20341625 - AluSp SINE Alu 0 303 2 209 279 0 29 chr15 65354449 65354517 -20341237 + CT-rich Low_complexity Low_complexity 2 67 0 338 333 111 0 chr15 65358130 65358283 -20337471 - MIR SINE MIR -72 190 21 207 100 0 0 chr15 65359132 65359162 -20336592 + (A)n Simple_repeat Simple_repeat 1 30 0 288 306 28 0 chr15 65361043 65361151 -20334603 + L2 LINE L2 3168 3278 -35 285 336 126 40 chr15 65361513 65361760 -20333994 + MLT1K LTR MaLR 143 410 -178 2656 67 0 0 chr15 65362796 65363108 -20332646 - AluSx SINE Alu 0 312 1 317 355 73 0 chr15 65363218 65363342 -20332412 - MER91A DNA MER1_type -63 133 1 216 0 0 0 chr15 65363795 65363819 -20331935 + (A)n Simple_repeat Simple_repeat 1 24 0 2325 113 0 3 chr15 65363821 65364131 -20331623 + AluSg SINE Alu 1 309 -1 2230 103 7 0 chr15 65364135 65364417 -20331337 + AluSx SINE Alu 1 284 -28 2286 89 0 0 chr15 65364572 65364888 -20330866 + AluY SINE Alu 1 316 0 238 260 78 0 chr15 65365818 65365895 -20329859 - MIR SINE MIR -6 256 174 974 281 31 39 chr15 65365920 65366280 -20329474 - MLT1I LTR MaLR 0 409 53 520 271 128 15 chr15 65366371 65366574 -20329180 - MIR SINE MIR -27 235 10 24 0 0 0 chr15 65366976 65367000 -20328754 + AT_rich Low_complexity Low_complexity 1 24 0 298 200 100 27 chr15 65367371 65367481 -20328273 + MER106A DNA MER1_type 119 236 0 619 301 66 19 chr15 65368716 65368975 -20326779 + L1MC/D LINE L1 5549 5819 -1989 869 78 298 21 chr15 65368982 65369123 -20326631 + AluSq SINE Alu 1 180 -133 765 171 64 54 chr15 65369136 65369396 -20326358 - Charlie1 DNA MER1_type -2582 179 6 2189 112 7 13 chr15 65369410 65369715 -20326039 - AluSq SINE Alu -10 303 1 207 243 29 14 chr15 65370404 65370500 -20325254 + CT-rich Low_complexity Low_complexity 1 97 0 2220 130 3 3 chr15 65371164 65371471 -20324283 - AluSx SINE Alu -5 307 1 1658 126 0 4 chr15 65371959 65372190 -20323564 - AluSx SINE Alu -82 230 1 2306 72 29 36 chr15 65372368 65372675 -20323079 + AluSq SINE Alu 1 305 -8 300 261 201 60 chr15 65372732 65372837 -20322917 - L1ME4a LINE L1 -11 6110 6021 2705 7 0 0 chr15 65372837 65373121 -20322633 + AluYb8 SINE Alu 29 312 -6 300 261 201 60 chr15 65373121 65373731 -20322023 - L1ME4a LINE L1 -100 6021 5294 421 285 142 32 chr15 65373981 65374263 -20321491 - L1ME4a LINE L1 -1115 5031 4711 260 83 21 0 chr15 65374976 65375024 -20320730 + (CA)n Simple_repeat Simple_repeat 2 50 0 478 151 172 0 chr15 65375859 65375952 -20319802 + FLAM_C SINE Alu 15 123 -20 237 98 0 0 chr15 65375952 65375993 -20319761 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2019 135 36 3 chr15 65376011 65376314 -20319440 + AluSq SINE Alu 1 313 0 336 260 58 0 chr15 65378414 65378518 -20317236 - MIR SINE MIR -73 189 80 184 208 113 0 chr15 65384193 65384246 -20311508 + MIR SINE MIR 24 82 -180 1788 97 3 144 chr15 65384284 65384625 -20311129 + AluJb SINE Alu 1 293 -19 456 257 112 6 chr15 65387336 65387515 -20308239 - Charlie2a DNA MER1_type -1190 1672 1475 583 215 6 6 chr15 65387596 65387754 -20308000 + (TGGA)n Simple_repeat Simple_repeat 3 160 0 529 208 56 7 chr15 65387898 65388042 -20307712 - Charlie2a DNA MER1_type -2487 295 145 252 296 111 66 chr15 65441413 65441639 -20254115 - MIR SINE MIR -6 256 21 2313 98 0 13 chr15 65441800 65442105 -20253649 - AluSc SINE Alu -8 301 1 183 302 19 0 chr15 65442162 65442215 -20253539 + L2 LINE L2 3255 3308 -5 334 362 0 0 chr15 65442315 65442431 -20253323 + MER117 DNA MER1_type 82 197 0 25 31 0 0 chr15 65443217 65443249 -20252505 + AT_rich Low_complexity Low_complexity 1 32 0 6141 52 3 9 chr15 65443254 65444035 -20251719 + L1P LINE L1 1 776 -5370 458 319 14 19 chr15 65444447 65444657 -20251097 + MIR SINE MIR 7 215 -47 1060 170 66 0 chr15 65444658 65444840 -20250914 + AluSg/x SINE Alu 104 297 -15 1765 188 7 0 chr15 65445883 65446186 -20249568 + AluJb SINE Alu 1 305 -7 230 276 35 11 chr15 65446477 65446564 -20249190 + L2 LINE L2 3163 3251 -21 771 238 46 26 chr15 65446573 65446832 -20248922 - Charlie8 DNA MER1_type -2135 282 29 485 234 76 14 chr15 65447819 65447964 -20247790 - MIR SINE MIR -9 253 100 314 260 0 27 chr15 65447981 65448054 -20247700 + MER92B LTR ERV1 8 78 -558 583 216 6 74 chr15 65448083 65448259 -20247495 + MER92B LTR ERV1 416 579 -57 343 200 21 53 chr15 65448243 65448338 -20247416 + MER92B LTR ERV1 541 632 -4 * 218 336 8 16 chr15 65448361 65448483 -20247271 - MIR SINE MIR -17 245 125 311 294 89 56 chr15 65449163 65449377 -20246377 + MIR SINE MIR 15 235 -27 2414 84 0 3 chr15 65450009 65450307 -20245447 - AluY SINE Alu -14 297 1 336 269 32 39 chr15 65450403 65450559 -20245195 + MIR SINE MIR 38 192 -70 1005 253 57 13 chr15 65450566 65450867 -20244887 + L1MC4 LINE L1 7588 7901 -141 477 191 45 9 chr15 65451380 65451490 -20244264 + L2 LINE L2 3188 3301 -12 747 288 206 15 chr15 65452191 65452666 -20243088 + L2 LINE L2 1801 2366 -948 411 364 5 21 chr15 65452780 65452967 -20242787 - MIR3 SINE MIR -2 206 23 785 262 11 0 chr15 65453131 65453314 -20242440 - MER117 DNA MER1_type 0 197 13 327 265 12 0 chr15 65453551 65453634 -20242120 + MIR SINE MIR 48 131 -131 2019 102 28 28 chr15 65454410 65454693 -20241061 + AluSc SINE Alu 1 283 -26 2114 114 0 0 chr15 65455008 65455281 -20240473 + AluSc SINE Alu 1 273 -36 23 0 0 0 chr15 65455281 65455304 -20240450 + AT_rich Low_complexity Low_complexity 1 23 0 187 188 0 0 chr15 65456092 65456124 -20239630 + L2 LINE L2 3261 3292 -21 929 240 99 86 chr15 65457150 65457524 -20238230 + MLT1C LTR MaLR 8 391 -76 2022 145 0 7 chr15 65457524 65457827 -20237927 - AluSx SINE Alu -11 301 1 929 240 99 86 chr15 65457827 65457906 -20237848 + MLT1C LTR MaLR 391 467 0 316 296 141 0 chr15 65458304 65458439 -20237315 + MIR SINE MIR 19 172 -90 474 18 0 0 chr15 65458469 65458524 -20237230 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 229 345 84 25 chr15 65459448 65459651 -20236103 - MIR SINE MIR 0 262 48 875 175 136 23 chr15 65459723 65459929 -20235825 - MSTD LTR MaLR 0 396 215 2508 179 39 5 chr15 65459929 65460371 -20235383 - MSTB2 LTR MaLR 0 457 1 875 175 136 23 chr15 65460371 65460478 -20235276 - MSTD LTR MaLR -181 215 1 240 234 21 55 chr15 65460664 65460759 -20234995 + MER5B DNA MER1_type 81 186 -3 1708 194 68 48 chr15 65461382 65461840 -20233914 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr15 65461912 65461933 -20233821 + AT_rich Low_complexity Low_complexity 1 21 0 786 176 0 0 chr15 65462893 65463018 -20232736 + FLAM_A SINE Alu 1 125 -8 1780 154 0 0 chr15 65465752 65466025 -20229729 + AluSx SINE Alu 40 312 0 214 304 14 0 chr15 65466116 65466185 -20229569 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 197 43 27 chr15 65466234 65466582 -20229172 - L1MC3 LINE L1 0 7785 5990 272 228 33 11 chr15 65466584 65466676 -20229078 - L1MC3 LINE L1 -1919 5889 5796 13947 108 32 2 chr15 65466681 65469478 -20226276 - L1PA7 LINE L1 0 6154 3270 308 264 78 36 chr15 65469487 65469654 -20226100 - L1MC3 LINE L1 -2067 5741 5568 422 269 84 35 chr15 65469890 65470050 -20225704 - MIR SINE MIR -6 256 80 1775 213 57 31 chr15 65470050 65470505 -20225249 + MLT1C LTR MaLR 1 467 0 422 269 84 35 chr15 65470505 65470583 -20225171 - MIR SINE MIR -182 80 7 252 250 0 0 chr15 65471358 65471414 -20224340 + Charlie7 DNA MER1_type 41 96 -2516 628 259 45 30 chr15 65471777 65471978 -20223776 + MIR SINE MIR 9 212 -50 242 267 27 40 chr15 65472780 65472855 -20222899 - L1M3 LINE L1 -650 5684 5611 436 274 70 21 chr15 65473004 65473179 -20222575 - L1M3 LINE L1 -583 5595 5413 542 280 11 42 chr15 65473628 65473817 -20221937 - MIR SINE MIR -21 241 59 478 270 12 37 chr15 65474429 65474592 -20221162 + Charlie8 DNA MER1_type 107 265 -2152 273 312 0 0 chr15 65474634 65474711 -20221043 + Charlie8 DNA MER1_type 2341 2417 0 354 284 70 70 chr15 65475927 65476198 -20219556 + L2 LINE L2 2916 3186 -86 2809 140 26 50 chr15 65476465 65477009 -20218745 + L1MB5 LINE L1 5627 6157 -17 2206 128 85 22 chr15 65477083 65477483 -20218271 - MSTB LTR MaLR 0 426 2 2259 99 10 0 chr15 65478166 65478458 -20217296 - AluSx SINE Alu -17 295 1 1632 208 64 34 chr15 65478991 65479428 -20216326 - MLT1C LTR MaLR 0 467 18 323 324 136 27 chr15 65479509 65479672 -20216082 + HAL1 LINE L1 1088 1232 -1275 198 71 0 0 chr15 65479672 65479700 -20216054 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 323 324 136 27 chr15 65479700 65479866 -20215888 + HAL1 LINE L1 1232 1453 -1054 2085 130 3 10 chr15 65480549 65480857 -20214897 + AluSq SINE Alu 1 306 -7 634 332 140 7 chr15 65481997 65482511 -20213243 + L2 LINE L2 2715 3294 -19 351 254 59 99 chr15 65484453 65484809 -20210945 - MLT1J LTR MaLR -75 464 123 504 198 103 9 chr15 65484952 65485068 -20210686 - MLT1A2 LTR MaLR -8 366 240 * 737 175 111 32 chr15 65485043 65485232 -20210522 - MLT1A1 LTR MaLR -31 334 131 1096 219 80 20 chr15 65485232 65485483 -20210271 + Tigger7 DNA MER2_type 2 267 -466 551 157 90 0 chr15 65485482 65485571 -20210183 + Tigger7 DNA MER2_type 2394 2490 -1 * 670 176 15 8 chr15 65485572 65485703 -20210051 - MLT1A1 LTR MaLR -232 133 2 2314 114 0 0 chr15 65486163 65486461 -20209293 + AluSg SINE Alu 1 298 -12 241 265 64 69 chr15 65486941 65487084 -20208670 + MIR SINE MIR 20 161 -61 181 250 194 14 chr15 65487117 65487189 -20208565 + MIR SINE MIR 18 102 -160 631 313 135 27 chr15 65487204 65487687 -20208067 - LTR67 LTR ERVL -3 554 20 322 307 20 0 chr15 65487710 65487811 -20207943 + MIR SINE MIR 160 262 0 552 241 166 48 chr15 65488286 65488473 -20207281 + MER63A DNA MER1_type 1 209 -1 1935 161 0 13 chr15 65488523 65488839 -20206915 - AluSx SINE Alu 0 312 1 3617 160 51 13 chr15 65489249 65489880 -20205874 - LTR51 LTR ERV1 -16 655 1 217 239 0 0 chr15 65490947 65490993 -20204761 + (CA)n Simple_repeat Simple_repeat 1 46 0 2733 142 54 11 chr15 65491113 65491578 -20204176 - MER31A LTR ERV1 0 485 1 522 189 0 11 chr15 65491613 65491708 -20204046 - MER31A LTR ERV1 -82 403 310 186 43 0 0 chr15 65491839 65491862 -20203892 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 295 239 34 10 chr15 65491910 65492006 -20203748 - MIR SINE MIR -63 145 57 2510 80 0 0 chr15 65492366 65492668 -20203086 - AluY SINE Alu -8 303 2 2296 117 7 0 chr15 65493297 65493596 -20202158 - AluSx SINE Alu -11 301 1 337 373 35 5 chr15 65493609 65493810 -20201944 + MIR SINE MIR 54 260 -2 277 250 189 61 chr15 65493870 65494066 -20201688 + LTR16A LTR ERVL 8 228 -229 2625 131 17 33 chr15 65494066 65494402 -20201352 + LTR45B LTR ERV1 3 441 -162 1861 132 59 0 chr15 65494402 65494675 -20201079 + AluSx SINE Alu 1 289 -23 2625 131 17 33 chr15 65494675 65494770 -20200984 + LTR45B LTR ERV1 441 536 -67 407 189 52 130 chr15 65494828 65495047 -20200707 + LTR16A LTR ERVL 225 418 -39 240 274 69 51 chr15 65495209 65495384 -20200370 - MIR SINE MIR 0 262 85 2162 129 0 3 chr15 65495474 65495776 -20199978 + AluSg SINE Alu 1 301 -9 1212 208 127 27 chr15 65495798 65496130 -20199624 - MLT1A1 LTR MaLR 0 365 1 2269 112 0 22 chr15 65496272 65496586 -20199168 + AluSg SINE Alu 1 307 -3 400 339 70 12 chr15 65496690 65496947 -20198807 - L3 LINE CR1 -265 1312 1041 1471 160 49 4 chr15 65497329 65497592 -20198162 - MER39 LTR ERV1 -27 680 406 419 163 109 0 chr15 65497613 65497705 -20198049 - L1MD3 LINE L1 -12 7983 7882 1795 43 0 0 chr15 65497717 65497926 -20197828 - L1PA3 LINE L1 -7 6148 5940 1317 179 127 7 chr15 65497927 65498259 -20197495 - MER39 LTR ERV1 -281 372 8 252 330 9 9 chr15 65498348 65498463 -20197291 - MIR SINE MIR 0 262 148 407 322 41 0 chr15 65499940 65500086 -20195668 + MIR SINE MIR 2 153 -109 415 345 26 13 chr15 65500126 65500352 -20195402 + MIR SINE MIR 34 262 0 22 94 0 0 chr15 65500352 65500416 -20195338 + AT_rich Low_complexity Low_complexity 1 64 0 796 151 125 13 chr15 65500713 65500865 -20194889 - FRAM SINE Alu -9 167 1 1911 149 42 44 chr15 65500973 65501038 -20194716 + MER31B LTR ERV1 1 65 -401 1490 188 38 24 chr15 65501038 65501325 -20194429 - AluJo SINE Alu -8 304 14 1911 149 42 44 chr15 65501325 65501642 -20194112 + MER31B LTR ERV1 65 382 -84 1087 165 87 10 chr15 65501697 65501903 -20193851 + MER31A LTR ERV1 1 222 -263 275 198 86 12 chr15 65502054 65502135 -20193619 - MIR SINE MIR -107 155 69 297 314 93 0 chr15 65502480 65502598 -20193156 - L2 LINE L2 0 3272 3144 244 321 114 0 chr15 65502691 65502822 -20192932 - L2 LINE L2 -330 2983 2838 357 200 107 0 chr15 65502846 65502921 -20192833 + MLT1J2 LTR MaLR 9 91 -359 365 353 18 6 chr15 65502985 65503152 -20192602 - L2 LINE L2 -181 3091 2923 256 279 0 0 chr15 65503297 65503358 -20192396 + GA-rich Low_complexity Low_complexity 2 62 0 993 195 45 0 chr15 65504201 65504401 -20191353 - MER3 DNA MER1_type 0 209 1 855 201 7 7 chr15 65504521 65504675 -20191079 - FRAM SINE Alu -12 154 1 2309 105 3 0 chr15 65504687 65504983 -20190771 - AluSp SINE Alu -15 298 2 466 337 27 0 chr15 65506365 65506549 -20189205 + MIR SINE MIR 9 197 -65 258 318 76 28 chr15 65507668 65507879 -20187875 + L2 LINE L2 2849 3069 -203 354 80 20 0 chr15 65508731 65508781 -20186973 - MADE1 DNA Mariner -29 51 1 2272 53 0 7 chr15 65509599 65509883 -20185871 - L1PA3 LINE L1 0 6155 5874 1101 157 0 0 chr15 65509906 65510072 -20185682 - AluSg/x SINE Alu -13 299 134 1775 141 4 14 chr15 65510072 65510348 -20185406 - AluSx SINE Alu -15 297 25 470 236 9 9 chr15 65510384 65510490 -20185264 + MER5B DNA MER1_type 2 107 -71 400 299 45 7 chr15 65511519 65511673 -20184081 + MIR SINE MIR 41 200 -62 192 231 0 0 chr15 65511686 65511725 -20184029 - L3 LINE CR1 -457 1120 1082 192 77 0 0 chr15 65512148 65512174 -20183580 + (CA)n Simple_repeat Simple_repeat 1 26 0 1584 78 0 23 chr15 65512474 65512691 -20183063 - AluY SINE Alu -9 302 91 782 239 17 17 chr15 65512691 65512867 -20182887 - MER58A DNA MER1_type -11 213 38 925 183 11 22 chr15 65512960 65513140 -20182614 + L1PA16 LINE L1 5969 6146 -20 485 301 36 6 chr15 65513261 65513427 -20182327 - MIR SINE MIR -49 213 43 560 249 73 78 chr15 65513612 65513799 -20181955 + MLT1H1 LTR MaLR 16 202 -353 2141 129 0 0 chr15 65513799 65514086 -20181668 - AluSx SINE Alu -25 287 1 560 249 73 78 chr15 65514086 65514241 -20181513 + MLT1H1 LTR MaLR 202 356 -199 646 184 81 60 chr15 65514241 65514426 -20181328 - MER53 DNA DNA 0 189 1 560 249 73 78 chr15 65514426 65514563 -20181191 + MLT1H1 LTR MaLR 356 550 -5 411 73 0 0 chr15 65515183 65515238 -20180516 + (CA)n Simple_repeat Simple_repeat 1 55 0 388 266 43 36 chr15 65515691 65515830 -20179924 - MER5A DNA MER1_type -26 163 24 436 301 57 57 chr15 65517656 65517902 -20177852 - MER102b DNA MER1_type 0 341 96 424 277 9 27 chr15 65517918 65518030 -20177724 + MLT1I LTR MaLR 100 209 -200 245 220 90 40 chr15 65518032 65518132 -20177622 - LTR48 LTR ERV1 -7 780 676 269 271 74 33 chr15 65518565 65518687 -20177067 + MLT1I LTR MaLR 283 409 0 2501 84 0 0 chr15 65519119 65519418 -20176336 + AluSp SINE Alu 1 299 -14 21 0 0 0 chr15 65519668 65519689 -20176065 + AT_rich Low_complexity Low_complexity 1 21 0 385 317 0 0 chr15 65519737 65519860 -20175894 - MIR SINE MIR -109 153 31 1253 176 23 18 chr15 65520599 65520820 -20174934 - MER58A DNA MER1_type 0 224 3 3212 155 19 6 chr15 65521110 65521653 -20174101 + MER39B LTR ERV1 1 427 -115 7749 153 33 21 chr15 65521663 65523110 -20172644 + L1M2 LINE L1 3926 5395 -834 2257 103 7 3 chr15 65523110 65523411 -20172343 + AluSx SINE Alu 1 302 -10 7749 153 33 21 chr15 65523411 65523480 -20172274 + L1M2 LINE L1 5395 5462 -767 1099 252 90 23 chr15 65525055 65525118 -20170636 - L1ME1 LINE L1 -5 6161 6104 2211 102 0 7 chr15 65525118 65525411 -20170343 - AluSx SINE Alu -21 291 1 1099 252 90 23 chr15 65525411 65525692 -20170062 - L1ME1 LINE L1 -62 6104 5794 301 141 50 71 chr15 65525701 65525800 -20169954 - MER34 LTR ERV1 -6 536 440 491 238 47 8 chr15 65526152 65526300 -20169454 - L1ME1 LINE L1 -379 5787 5644 415 162 0 81 chr15 65526304 65526326 -20169428 + MLT1B LTR MaLR 35 57 -333 1653 170 113 3 chr15 65526326 65526655 -20169099 - MLT1A1 LTR MaLR 0 365 1 415 162 0 81 chr15 65526655 65526731 -20169023 + MLT1B LTR MaLR 57 125 -265 1327 160 53 21 chr15 65527204 65527485 -20168269 + MLT1B LTR MaLR 98 387 -3 353 252 9 18 chr15 65527498 65527609 -20168145 - L1MC4a LINE L1 -1916 5892 5783 192 253 111 105 chr15 65527613 65527775 -20167979 - MIR SINE MIR -79 183 21 1596 174 10 42 chr15 65527955 65528266 -20167488 - AluJb SINE Alu -11 301 1 292 244 122 11 chr15 65529650 65529740 -20166014 + MLT1J2 LTR MaLR 349 448 -2 376 348 14 28 chr15 65530644 65530785 -20164969 - MER91A DNA MER1_type -51 145 7 1016 230 102 85 chr15 65531570 65532088 -20163666 - L2 LINE L2 -518 2796 2270 258 179 36 0 chr15 65532082 65532138 -20163616 + L2 LINE L2 2453 2510 -804 * 1166 267 88 17 chr15 65532139 65532689 -20163065 + L2 LINE L2 2730 3313 0 2375 77 0 23 chr15 65532955 65533265 -20162489 - AluY SINE Alu -8 303 1 734 241 22 56 chr15 65533558 65533790 -20161964 - MIR SINE MIR -21 241 18 2271 108 0 7 chr15 65534492 65534798 -20160956 - AluSx SINE Alu -8 304 1 241 337 159 6 chr15 65534881 65535044 -20160710 - MIR3 SINE MIR -9 199 12 2313 109 0 3 chr15 65535479 65535783 -20159971 - AluSg SINE Alu -7 303 1 510 253 208 7 chr15 65536094 65536248 -20159506 + MIR3 SINE MIR 21 205 -3 341 253 226 48 chr15 65536286 65536472 -20159282 + MIR SINE MIR 38 256 -6 227 238 0 0 chr15 65536542 65536584 -20159170 + polypyrimidine Low_complexity Low_complexity 4 45 0 353 305 102 49 chr15 65536588 65536834 -20158920 - L2 LINE L2 -10 3262 3004 215 149 0 21 chr15 65537804 65537851 -20157903 + (TCC)n Simple_repeat Simple_repeat 1 46 0 1634 195 0 20 chr15 65539158 65539461 -20156293 + AluJo SINE Alu 1 297 -15 870 258 110 17 chr15 65539513 65539812 -20155942 - MLT1E LTR MaLR -243 350 24 267 337 88 60 chr15 65540906 65541191 -20154563 + L2 LINE L2 2902 3194 -78 726 291 76 0 chr15 65541228 65541465 -20154289 - MIR SINE MIR -2 260 6 239 337 35 76 chr15 65542619 65542791 -20152963 + MIR3 SINE MIR 16 180 -28 2692 270 68 37 chr15 65542822 65543542 -20152212 + L1MEc LINE L1 786 1482 -4733 2121 135 3 0 chr15 65543542 65543846 -20151908 + AluSx SINE Alu 1 305 -7 2692 270 68 37 chr15 65543846 65544946 -20150808 + L1MEc LINE L1 1482 2620 -3595 794 222 11 22 chr15 65544962 65545142 -20150612 - MLT1A1 LTR MaLR -2 363 186 1241 60 0 0 chr15 65545155 65545305 -20150449 - L1PA4 LINE L1 0 6155 6006 6427 29 0 0 chr15 65545410 65546547 -20149207 - L1PA4 LINE L1 -153 6002 4866 1001 215 15 5 chr15 65546547 65546742 -20149012 - MLT1A1 LTR MaLR -168 197 1 1532 245 70 33 chr15 65546754 65546960 -20148794 + L1MEc LINE L1 2708 2905 -3310 2801 136 35 23 chr15 65546960 65547387 -20148367 + MSTB1 LTR MaLR 1 432 0 1532 245 70 33 chr15 65547387 65547719 -20148035 + L1MEc LINE L1 2905 3266 -2949 3696 151 19 5 chr15 65547764 65548353 -20147401 + LTR26 LTR ERV1 1 597 -6 1631 168 59 91 chr15 65549333 65549708 -20146046 - MLT1A1 LTR MaLR 0 365 3 788 274 30 17 chr15 65550377 65550607 -20145147 - MIR SINE MIR 0 262 30 2301 95 0 13 chr15 65550844 65551148 -20144606 + AluSx SINE Alu 1 300 -12 1040 346 50 17 chr15 65551296 65551779 -20143975 - L3 LINE CR1 -622 955 457 1718 187 137 5 chr15 65551833 65552269 -20143485 + MER77 LTR ERV1 54 601 -4 219 176 392 0 chr15 65554167 65554241 -20141513 - MER5A DNA MER1_type -80 109 7 532 245 64 53 chr15 65554446 65554634 -20141120 + MIR SINE MIR 2 191 -71 756 264 17 0 chr15 65555891 65556065 -20139689 - MER5B DNA MER1_type 0 178 2 2126 121 13 3 chr15 65556299 65556597 -20139157 - AluSx SINE Alu -11 301 1 242 344 60 12 chr15 65556630 65556772 -20138982 - MIR3 SINE MIR -27 181 35 474 277 37 27 chr15 65558122 65558310 -20137444 + MIR SINE MIR 23 212 -50 299 308 93 29 chr15 65559593 65559765 -20135989 - MIR SINE MIR -6 256 74 404 214 0 10 chr15 65560046 65560149 -20135605 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 250 271 0 0 chr15 65561852 65561900 -20133854 + polypyrimidine Low_complexity Low_complexity 2 49 0 1158 237 65 7 chr15 65562011 65562319 -20133435 - L1ME3A LINE L1 -291 5879 5554 565 273 34 67 chr15 65562505 65562589 -20133165 - MIR SINE MIR 0 262 177 2105 111 7 7 chr15 65562589 65562887 -20132867 - AluSx SINE Alu -14 298 1 565 273 34 67 chr15 65562887 65563040 -20132714 - MIR SINE MIR -85 177 33 1088 198 75 19 chr15 65563236 65563448 -20132306 - MER58A DNA MER1_type 0 224 1 440 285 225 4 chr15 65564023 65564272 -20131482 + L2 LINE L2 3008 3311 -2 644 285 92 0 chr15 65565265 65565472 -20130282 - MIR SINE MIR -11 251 26 309 305 80 53 chr15 65565537 65565875 -20129879 - L1ME4a LINE L1 -3 6118 5772 22 35 0 0 chr15 65567729 65567758 -20127996 + AT_rich Low_complexity Low_complexity 1 29 0 2070 205 10 32 chr15 65567853 65568257 -20127497 - MSTD LTR MaLR -1 395 1 420 294 53 29 chr15 65568828 65569126 -20126628 + L1MDa LINE L1 1287 1601 -4929 1023 235 37 48 chr15 65569699 65569993 -20125761 - LTR16A LTR ERVL -10 440 150 3282 218 61 30 chr15 65570010 65570784 -20124970 - MER21B LTR ERV1 -47 816 19 475 188 69 20 chr15 65570782 65570883 -20124871 - MER21B LTR ERV1 -757 106 1 * 252 0 0 0 chr15 65570905 65570933 -20124821 + (T)n Simple_repeat Simple_repeat 1 28 0 485 293 9 0 chr15 65571076 65571192 -20124562 + MIR SINE MIR 32 148 -60 978 228 55 113 chr15 65571204 65571727 -20124027 + MER113 DNA MER1_type? 1 493 -28 6239 148 21 13 chr15 65572430 65574291 -20121463 - L1MA4A LINE L1 -2 7003 5133 1031 175 5 14 chr15 65574301 65574524 -20121230 + L1 LINE L1 2951 3171 -2975 5662 179 39 60 chr15 65574539 65574799 -20120955 - L1MA4A LINE L1 -1717 5131 4867 1866 94 112 8 chr15 65574799 65575066 -20120688 - AluSg SINE Alu -13 297 3 5662 179 39 60 chr15 65575066 65576284 -20119470 - L1MA4A LINE L1 -1981 4867 3685 4660 127 43 57 chr15 65577154 65577950 -20117804 - LTR1 LTR ERV1 0 785 1 672 151 43 22 chr15 65577969 65578108 -20117646 + MLT2C2 LTR ERVL 1 142 -322 367 353 69 10 chr15 65578453 65578657 -20117097 + MIR SINE MIR 32 247 -15 526 111 12 0 chr15 65580397 65580478 -20115276 + MSTB LTR MaLR 1 82 -344 1266 158 58 82 chr15 65580586 65580793 -20114961 + MLT2C2 LTR ERVL 144 355 -109 1905 144 7 7 chr15 65580793 65581098 -20114656 + AluSx SINE Alu 1 305 -7 1266 158 58 82 chr15 65581098 65581179 -20114575 + MLT2C2 LTR ERVL 355 426 -38 612 0 0 0 chr15 65581179 65581247 -20114507 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 1266 158 58 82 chr15 65581247 65581286 -20114468 + MLT2C2 LTR ERVL 426 464 0 2282 114 7 0 chr15 65581340 65581647 -20114107 - AluSc SINE Alu 0 309 1 238 346 23 23 chr15 65581764 65581897 -20113857 - MER5B DNA MER1_type -17 161 29 287 339 183 37 chr15 65581952 65582335 -20113419 + L2 LINE L2 2826 3264 -8 1085 211 20 5 chr15 65583084 65583288 -20112466 - MER21B LTR ERV1 -427 436 230 1520 252 96 33 chr15 65583399 65583951 -20111803 - L1ME4a LINE L1 -208 5913 5327 2419 90 7 0 chr15 65584229 65584616 -20111138 - AluSx SINE Alu 0 389 1 227 324 28 28 chr15 65584674 65584782 -20110972 + L2 LINE L2 3143 3250 -22 15763 175 13 64 chr15 65586602 65587476 -20108278 - L1MA4A LINE L1 -3303 3545 2628 1999 144 0 7 chr15 65587476 65587774 -20107980 - AluSx SINE Alu -14 298 3 15763 175 13 64 chr15 65587774 65590633 -20105121 - L1MA4A LINE L1 -4220 2628 3 706 216 103 39 chr15 65591904 65592108 -20103646 + MER20 DNA MER1_type 1 217 -2 592 264 109 20 chr15 65592763 65592964 -20102790 + MIR SINE MIR 31 249 -13 2273 79 0 4 chr15 65594190 65594497 -20101257 + AluSc SINE Alu 1 306 0 2326 181 46 25 chr15 65594713 65595231 -20100523 - MER69 DNA AcHobo 0 2526 1998 987 263 70 2 chr15 65595215 65595672 -20100082 - MER69 DNA AcHobo -658 568 1 * 2868 124 18 23 chr15 65595703 65596138 -20099616 - Tigger2a DNA MER2_type 0 434 2 350 304 17 17 chr15 65596155 65596270 -20099484 + MIR3 SINE MIR 62 176 -32 3103 127 12 16 chr15 65597256 65597745 -20098009 + MER1A DNA MER1_type 1 487 -42 411 298 87 50 chr15 65598060 65598278 -20097476 + L2 LINE L2 2063 2288 -1026 366 266 21 0 chr15 65598278 65598372 -20097382 - MER94 DNA DNA -1 133 38 190 243 0 0 chr15 65598409 65598446 -20097308 + L2 LINE L2 2708 2744 -570 323 241 12 27 chr15 65598667 65598749 -20097005 - MIR SINE MIR -85 123 44 2271 205 92 29 chr15 65598804 65599325 -20096429 + MLT2B3 LTR ERVL 1 554 0 210 71 0 0 chr15 65599368 65599396 -20096358 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 355 211 95 11 chr15 65599918 65600013 -20095741 - MIR SINE MIR -48 214 112 209 330 34 0 chr15 65600243 65600331 -20095423 - MER5B DNA MER1_type -43 135 45 265 324 184 10 chr15 65601302 65601509 -20094245 - MIR SINE MIR 0 262 20 315 150 0 0 chr15 65602086 65602146 -20093608 + (TG)n Simple_repeat Simple_repeat 1 60 0 244 190 25 0 chr15 65602402 65602481 -20093273 + (TTCA)n Simple_repeat Simple_repeat 2 82 0 373 333 51 7 chr15 65602801 65602939 -20092815 - MER91B DNA MER1_type 0 190 47 255 288 144 23 chr15 65603024 65603156 -20092598 + L2 LINE L2 3122 3269 -3 2178 128 0 3 chr15 65603331 65603628 -20092126 - AluSx SINE Alu -16 296 1 280 331 86 46 chr15 65603849 65604024 -20091730 + L3 LINE CR1 1334 1515 -62 387 215 28 75 chr15 65604796 65604903 -20090851 + MLT1F1 LTR MaLR 35 136 -431 539 227 164 22 chr15 65604903 65605128 -20090626 + L1MD3 LINE L1 7423 7679 -316 3507 132 36 6 chr15 65605128 65605660 -20090094 + MER4D LTR ERV1 1 548 -355 1469 133 0 0 chr15 65605660 65605871 -20089883 - AluSg/x SINE Alu -2 308 98 1322 119 0 5 chr15 65605971 65606164 -20089590 + AluSg/x SINE Alu 118 309 -3 675 209 51 0 chr15 65606202 65606360 -20089394 + L1MD3 LINE L1 7829 7994 -1 862 318 45 36 chr15 65609421 65609861 -20085893 + MLT1J2 LTR MaLR 1 444 -6 2374 117 64 0 chr15 65609908 65610250 -20085504 - THE1B LTR MaLR 0 364 1 185 391 14 0 chr15 65610659 65610728 -20085026 + L2 LINE L2 3150 3219 -53 1033 159 53 97 chr15 65611367 65611594 -20084160 + MER20 DNA MER1_type 3 219 0 28 0 0 0 chr15 65612121 65612149 -20083605 + AT_rich Low_complexity Low_complexity 1 28 0 368 316 70 43 chr15 65612187 65612374 -20083380 - MIR3 SINE MIR -2 206 15 705 241 43 154 chr15 65612561 65613183 -20082571 - MLT1H1 LTR MaLR -2 553 1 253 279 27 72 chr15 65613307 65613418 -20082336 + MIR SINE MIR 82 187 -75 1750 117 47 47 chr15 65613473 65613772 -20081982 + AluJb SINE Alu 1 299 -13 390 280 30 30 chr15 65614779 65614947 -20080807 - MIR SINE MIR -7 255 88 631 341 81 54 chr15 65614981 65615424 -20080330 + L2 LINE L2 2817 3271 -1 24 32 0 0 chr15 65615640 65615671 -20080083 + AT_rich Low_complexity Low_complexity 1 31 0 417 282 110 40 chr15 65615825 65616052 -20079702 - L3b LINE CR1 -155 1428 1186 2268 109 0 3 chr15 65616412 65616715 -20079039 - AluSg SINE Alu -3 307 6 1857 153 42 134 chr15 65616754 65617230 -20078524 + MSTB1 LTR MaLR 1 432 0 298 287 66 33 chr15 65617407 65617529 -20078225 - L2 LINE L2 -1 3271 3146 974 237 32 28 chr15 65617529 65617778 -20077976 + MLT1H1 LTR MaLR 1 250 -305 1231 246 14 10 chr15 65617879 65618167 -20077587 + MLT1H1 LTR MaLR 267 555 0 211 296 62 0 chr15 65618299 65618380 -20077374 - MER91C DNA MER1_type -48 92 7 228 270 81 27 chr15 65619318 65619429 -20076325 - MLT1L LTR MaLR -44 571 455 254 336 87 39 chr15 65619437 65619770 -20075984 - MLT1L LTR MaLR -266 349 1 436 123 31 0 chr15 65620168 65620233 -20075521 - 5S rRNA rRNA -12 109 43 344 304 93 25 chr15 65620326 65620487 -20075267 + L2 LINE L2 3101 3272 0 239 261 14 29 chr15 65620554 65620623 -20075131 + CT-rich Low_complexity Low_complexity 5 72 0 646 123 208 0 chr15 65621391 65621497 -20074257 + AluY SINE Alu 1 128 -183 29 78 0 0 chr15 65621609 65621673 -20074081 + AT_rich Low_complexity Low_complexity 1 64 0 254 118 176 137 chr15 65622084 65622186 -20073568 - MER96B DNA MER1_type? -280 137 32 389 333 71 75 chr15 65622337 65622900 -20072854 - L2 LINE L2 -5 3267 2706 1863 155 17 0 chr15 65623265 65623556 -20072198 + AluY SINE Alu 1 296 -15 235 239 0 0 chr15 65625265 65625311 -20070443 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 4215 73 9 2 chr15 65625486 65626017 -20069737 + L1PA13 LINE L1 5629 6163 0 1766 194 161 2 chr15 65626031 65626434 -20069320 - MLT1C LTR MaLR 0 467 1 580 246 212 58 chr15 65626894 65627187 -20068567 - L2 LINE L2 -8 3305 2968 642 241 31 44 chr15 65627222 65627350 -20068404 + MIR SINE MIR 26 149 -113 2056 148 52 0 chr15 65627350 65627675 -20068079 - MER2 DNA MER2_type -1 343 2 642 241 31 44 chr15 65627675 65627754 -20068000 + MIR SINE MIR 149 228 -34 36462 98 11 13 chr15 65628329 65632112 -20063642 + L1P LINE L1 11 3785 -2361 3455 30 15 0 chr15 65632112 65632495 -20063259 + L1PA3 LINE L1 5753 6155 0 36462 98 11 13 chr15 65632495 65633920 -20061834 + L1P LINE L1 3785 5211 -935 7397 58 8 3 chr15 65634024 65635040 -20060714 + L1PA6 LINE L1 5135 6154 0 314 298 142 41 chr15 65635110 65635328 -20060426 - L1MC5 LINE L1 -70 7891 7652 242 274 104 9 chr15 65635334 65635440 -20060314 - L1MC4 LINE L1 -298 7744 7629 1750 151 68 4 chr15 65636552 65636831 -20058923 + AluJb SINE Alu 1 297 -15 274 324 95 50 chr15 65637042 65637194 -20058560 + MIR SINE MIR 5 173 -89 1641 160 19 100 chr15 65637194 65637276 -20058478 - MLT1B LTR MaLR -3 387 300 2055 143 7 7 chr15 65637276 65637583 -20058171 - AluSq SINE Alu -2 311 5 1641 160 19 100 chr15 65637583 65637919 -20057835 - MLT1B LTR MaLR -90 300 3 274 324 95 50 chr15 65637919 65638007 -20057747 + MIR SINE MIR 173 256 -6 2263 129 7 0 chr15 65638146 65638456 -20057298 - AluSx SINE Alu 0 312 1 404 341 64 6 chr15 65640559 65640732 -20055022 - MIR SINE MIR -60 202 20 333 252 122 0 chr15 65641323 65641462 -20054292 + MER103 DNA DNA 11 166 0 189 0 0 0 chr15 65641466 65641487 -20054267 + (T)n Simple_repeat Simple_repeat 1 21 0 185 324 0 42 chr15 65641727 65641798 -20053956 - L3 LINE CR1 -1316 261 194 631 296 69 9 chr15 65642665 65642881 -20052873 - MIR SINE MIR -22 240 12 196 306 81 9 chr15 65643207 65643318 -20052436 + MIR SINE MIR 89 207 -55 1698 188 28 0 chr15 65644521 65644808 -20050946 + AluJo SINE Alu 1 295 -17 2152 148 0 0 chr15 65644812 65645116 -20050638 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 65645137 65645159 -20050595 + AT_rich Low_complexity Low_complexity 1 22 0 271 250 54 22 chr15 65647396 65647488 -20048266 - MIR3 SINE MIR -9 199 105 2256 131 0 0 chr15 65648600 65648912 -20046842 - AluSx SINE Alu 0 312 1 212 250 0 0 chr15 65649358 65649402 -20046352 + L2 LINE L2 3269 3312 -1 191 264 209 0 chr15 65649446 65649537 -20046217 - L2 LINE L2 0 3313 3204 202 313 87 35 chr15 65649638 65649753 -20046001 - L2 LINE L2 -260 3053 2933 428 260 90 35 chr15 65649763 65650075 -20045679 + L1ME4a LINE L1 5568 5896 -225 439 298 112 38 chr15 65650079 65650321 -20045433 - L1MC/D LINE L1 -569 5552 5301 4192 265 83 32 chr15 65650323 65650841 -20044913 + L1ME1 LINE L1 83 573 -5823 1676 172 58 6 chr15 65650841 65651167 -20044587 + MER2 DNA MER2_type 2 344 0 4192 265 83 32 chr15 65651167 65651929 -20043825 + L1ME1 LINE L1 573 1294 -5102 2139 130 0 3 chr15 65651929 65652237 -20043517 + AluSx SINE Alu 1 307 -5 4192 265 83 32 chr15 65652237 65653009 -20042745 + L1ME1 LINE L1 1294 2242 -4154 2999 107 14 0 chr15 65653122 65653560 -20042194 + L1PB1 LINE L1 5708 6151 0 5086 143 33 10 chr15 65653596 65654554 -20041200 - L1MA4A LINE L1 -5 7360 6381 12303 173 22 32 chr15 65654636 65657505 -20038249 - L1MA4A LINE L1 -814 6394 3555 3028 183 92 43 chr15 65657501 65658372 -20037382 - L1MA4A LINE L1 -5886 1323 114 * 4463 243 34 12 chr15 65658413 65659399 -20036355 + L1ME1 LINE L1 2295 3324 -2891 2014 141 7 3 chr15 65659399 65659705 -20036049 + AluSc SINE Alu 1 307 -2 4463 243 34 12 chr15 65659705 65660176 -20035578 + L1ME1 LINE L1 3324 3783 -2432 484 165 0 0 chr15 65660185 65660270 -20035484 + L1MB5 LINE L1 5783 5867 -307 435 151 0 0 chr15 65660275 65660348 -20035406 - LTR35 LTR ERV1 -4 614 542 * 1945 98 0 49 chr15 65660340 65660645 -20035109 - LTR35 LTR ERV1 -228 390 101 4866 231 44 25 chr15 65660649 65663061 -20032693 + L1ME1 LINE L1 3771 6228 -7 29 78 0 0 chr15 65663170 65663234 -20032520 + AT_rich Low_complexity Low_complexity 1 64 0 296 303 20 0 chr15 65663593 65663692 -20032062 + CT-rich Low_complexity Low_complexity 2 102 0 338 298 58 58 chr15 65664689 65664860 -20030894 - MIR3 SINE MIR -4 204 34 207 100 0 0 chr15 65665790 65665820 -20029934 + (T)n Simple_repeat Simple_repeat 1 30 0 1490 59 5 0 chr15 65665862 65666064 -20029690 - L1P LINE L1 -4518 1628 1426 * 1638 39 0 0 chr15 65666063 65666271 -20029483 + L1PA5 LINE L1 4547 4754 -1392 7281 40 6 2 chr15 65666271 65667286 -20028468 + L1PA5 LINE L1 5124 6148 -6 1501 117 65 8 chr15 65667514 65667762 -20027992 + L1PA11 LINE L1 5912 6173 -1 426 305 123 11 chr15 65668126 65668313 -20027441 - MIR SINE MIR -51 211 4 2260 97 3 16 chr15 65669120 65669429 -20026325 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr15 65669767 65669788 -20025966 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 65669829 65669851 -20025903 + AT_rich Low_complexity Low_complexity 1 22 0 1209 149 36 117 chr15 65669876 65670157 -20025597 + AluJo SINE Alu 25 282 -30 306 180 0 0 chr15 65670180 65670241 -20025513 + (CA)n Simple_repeat Simple_repeat 2 62 0 57 82 0 25 chr15 65670260 65670456 -20025298 + AT_rich Low_complexity Low_complexity 1 191 0 353 294 84 44 chr15 65670608 65670951 -20024803 + L1ME4a LINE L1 5589 5945 -176 37 39 0 0 chr15 65671067 65671118 -20024636 + AT_rich Low_complexity Low_complexity 1 51 0 885 272 91 16 chr15 65722108 65722446 -19973308 - L1M4 LINE L1 -511 5651 5296 1264 234 19 0 chr15 65722678 65722985 -19972769 - AluSq SINE Alu 0 313 1 2181 122 0 16 chr15 65723481 65723792 -19971962 - AluSx SINE Alu -6 306 1 25 75 0 0 chr15 65724105 65724158 -19971596 + AT_rich Low_complexity Low_complexity 1 53 0 1795 196 65 67 chr15 65724224 65724730 -19971024 + MLT1D LTR MaLR 1 505 0 1649 165 103 34 chr15 65724940 65725327 -19970427 + MER110A LTR ERV1 1 414 -54 772 185 30 0 chr15 65725353 65725488 -19970266 - MLT1D LTR MaLR -3 502 364 2033 132 14 0 chr15 65725969 65726265 -19969489 + AluSq SINE Alu 13 312 -1 520 286 21 16 chr15 65726835 65727024 -19968730 + MER112 DNA MER1_type 65 254 -6 418 274 10 0 chr15 65727989 65728091 -19967663 - MER5A DNA MER1_type -78 111 9 185 280 75 21 chr15 65729006 65729099 -19966655 + MIR SINE MIR 34 131 -131 31 26 0 0 chr15 65730835 65730873 -19964881 + AT_rich Low_complexity Low_complexity 1 38 0 438 320 66 66 chr15 65731786 65732058 -19963696 + L2 LINE L2 2990 3261 -11 449 86 0 0 chr15 65732450 65732520 -19963234 + Alu SINE Alu 239 308 -3 215 328 49 30 chr15 65732603 65732752 -19963002 - MIR SINE MIR -27 181 28 313 319 60 25 chr15 65732874 65733057 -19962697 + MIR SINE MIR 7 196 -63 521 68 81 0 chr15 65733112 65733186 -19962568 - MADE1 DNA Mariner 0 80 1 1980 240 43 74 chr15 65733431 65734040 -19961714 - MLT1E LTR MaLR -2 591 2 460 321 77 71 chr15 65734437 65735116 -19960638 + L2 LINE L2 2587 3263 -9 632 285 124 74 chr15 65735161 65735797 -19959957 - L2 LINE L2 0 3313 2620 2388 251 53 12 chr15 65735801 65736202 -19959552 + L1M4 LINE L1 3750 4196 -1950 285 29 0 0 chr15 65736202 65736236 -19959518 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2388 251 53 12 chr15 65736236 65736564 -19959190 + L1M4 LINE L1 4196 4509 -1637 222 406 10 0 chr15 65736574 65736675 -19959079 + L2 LINE L2 2595 2696 -618 310 272 80 32 chr15 65736779 65736904 -19958850 - MIR SINE MIR -115 147 17 498 61 0 0 chr15 65737200 65737266 -19958488 + (CA)n Simple_repeat Simple_repeat 1 66 0 284 354 31 16 chr15 65738389 65738516 -19957238 + MER117 DNA MER1_type 69 197 0 21 0 0 0 chr15 65739622 65739643 -19956111 + AT_rich Low_complexity Low_complexity 1 21 0 2544 90 90 3 chr15 65739672 65740017 -19955737 - THE1C LTR MaLR 0 375 1 528 165 29 0 chr15 65741205 65741308 -19954446 - L1MA8 LINE L1 -5 6286 6181 269 200 33 17 chr15 65741436 65741496 -19954258 - MIR SINE MIR -55 153 93 314 281 128 0 chr15 65742115 65742266 -19953488 - MIR SINE MIR -62 146 11 204 280 20 80 chr15 65742266 65742366 -19953388 + L3b LINE CR1 1179 1272 -311 500 248 121 6 chr15 65743453 65743610 -19952144 - MIR SINE MIR -40 222 48 243 288 123 14 chr15 65743668 65743741 -19952013 + MIR SINE MIR 25 101 -107 2331 112 0 0 chr15 65744750 65745053 -19950701 + AluSg SINE Alu 1 303 -7 314 281 56 25 chr15 65745129 65745289 -19950465 + MIR SINE MIR 84 248 -14 600 208 8 31 chr15 65745454 65745584 -19950170 - MER58B DNA MER1_type -11 330 204 197 255 20 59 chr15 65746117 65746219 -19949535 - MIR SINE MIR -21 241 144 994 182 23 23 chr15 65746224 65746438 -19949316 + MER20 DNA MER1_type 1 214 -5 243 351 43 0 chr15 65746454 65746548 -19949206 - MIR SINE MIR -77 131 34 4088 98 51 61 chr15 65747043 65747694 -19948060 - LTR9B LTR ERV1 0 644 1 758 272 69 85 chr15 65748343 65748851 -19946903 + L2 LINE L2 2813 3312 -1 596 225 39 34 chr15 65749035 65749213 -19946541 - MER104 DNA MER2_type 0 180 2 827 127 8 8 chr15 65749298 65749424 -19946330 - FLAM_C SINE Alu 0 143 18 564 183 0 40 chr15 65750363 65750489 -19945265 + L1MA7 LINE L1 6171 6291 0 570 319 37 23 chr15 65750532 65750748 -19945006 + MIR SINE MIR 31 249 -13 397 304 112 13 chr15 65750854 65751078 -19944676 - MER110 LTR ERV1 -11 480 235 281 233 104 153 chr15 65751793 65751945 -19943809 - MIR SINE MIR -12 250 109 1155 200 163 46 chr15 65751945 65752270 -19943484 - MLT1A1 LTR MaLR -2 363 1 281 233 104 153 chr15 65752270 65752319 -19943435 - MIR SINE MIR -153 109 59 2669 93 30 33 chr15 65752364 65752729 -19943025 + THE1B LTR MaLR 1 364 0 644 283 32 16 chr15 65752808 65752995 -19942759 - MIR SINE MIR -9 253 64 2089 113 0 36 chr15 65754214 65754593 -19941161 + AluSx SINE Alu 1 368 0 285 371 23 0 chr15 65756229 65756361 -19939393 - L3 LINE CR1 -82 1495 1361 327 176 27 27 chr15 65756368 65756379 -19939375 + MER73 LTR ERVL 8 18 -626 1642 164 68 3 chr15 65756379 65756672 -19939082 - AluJo SINE Alu 0 312 1 327 176 27 27 chr15 65756672 65756734 -19939020 + MER73 LTR ERVL 17 81 -563 276 196 176 20 chr15 65756722 65756824 -19938930 + MER54A LTR ERVL 283 400 -501 * 2115 171 33 13 chr15 65756839 65757236 -19938518 + MER73 LTR ERVL 238 642 -2 2403 194 68 42 chr15 65757476 65758095 -19937659 - L1MC4 LINE L1 -137 7905 7271 2075 133 3 0 chr15 65758523 65758808 -19936946 + AluSx SINE Alu 1 286 -26 669 249 80 24 chr15 65758902 65759115 -19936639 + MIR SINE MIR 4 228 -34 402 306 48 80 chr15 65759164 65759478 -19936276 - L2 LINE L2 -64 3249 2946 184 213 0 0 chr15 65759743 65759790 -19935964 - L3 LINE CR1 -418 1159 1113 1021 302 3 10 chr15 65760290 65760621 -19935133 + AluSq SINE Alu 1 329 0 240 111 0 0 chr15 65760966 65761002 -19934752 + (CTG)n Simple_repeat Simple_repeat 3 38 0 243 170 0 0 chr15 65761041 65761088 -19934666 + GA-rich Low_complexity Low_complexity 3 49 0 730 249 6 6 chr15 65761172 65761337 -19934417 - MIR SINE MIR -89 173 9 858 266 5 0 chr15 65761337 65761525 -19934229 - MER5A DNA MER1_type 0 189 1 1226 177 5 0 chr15 65762036 65762222 -19933532 - MER5A DNA MER1_type -2 187 1 310 347 36 62 chr15 65762447 65762721 -19933033 - L2 LINE L2 -4 3268 3002 262 265 92 83 chr15 65763017 65763285 -19932469 - L2 LINE L2 -236 3036 2768 2308 106 0 0 chr15 65763294 65763596 -19932158 - AluSg SINE Alu -8 302 1 801 168 50 31 chr15 65763783 65763944 -19931810 - L1MB3 LINE L1 -5 6178 6015 323 298 0 50 chr15 65763944 65764085 -19931669 - L2 LINE L2 -600 2714 2581 211 283 0 0 chr15 65764087 65764133 -19931621 - MIR SINE MIR -132 76 31 681 265 42 33 chr15 65764284 65764499 -19931255 - MIR SINE MIR -27 235 19 240 234 0 0 chr15 65764755 65764802 -19930952 - MER96 DNA MER1_type? -77 98 52 1900 147 10 3 chr15 65765547 65765840 -19929914 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr15 65765888 65765910 -19929844 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 65766413 65766442 -19929312 + AT_rich Low_complexity Low_complexity 1 29 0 257 191 274 12 chr15 65768464 65768548 -19927206 - MER91C DNA MER1_type -11 129 24 1039 167 16 52 chr15 65768606 65768761 -19926993 - MER58A DNA MER1_type -2197 223 75 2054 141 0 3 chr15 65768761 65769052 -19926702 - AluSc SINE Alu -19 290 1 1039 167 16 52 chr15 65769052 65769088 -19926666 - MER58A DNA MER1_type -2345 75 39 982 172 108 34 chr15 65769116 65769320 -19926434 - MER20 DNA MER1_type 0 219 1 220 296 0 91 chr15 65770636 65770724 -19925030 - L2 LINE L2 -46 3226 3147 629 206 53 8 chr15 65771019 65771150 -19924604 - MER58A DNA MER1_type -51 173 37 388 325 20 30 chr15 65771784 65771981 -19923773 + L3b LINE CR1 1125 1319 -264 * 509 314 130 49 chr15 65771980 65772448 -19923306 + L2 LINE L2 2806 3311 -2 2009 173 48 0 chr15 65773187 65773517 -19922237 + MER7A DNA MER2_type 3 346 0 645 291 110 18 chr15 65773857 65774139 -19921615 + L3 LINE CR1 1270 1577 0 2163 115 7 0 chr15 65776668 65776972 -19918782 + AluY SINE Alu 1 306 -5 947 234 27 0 chr15 65777151 65777335 -19918419 - MER63A DNA MER1_type -20 190 2 586 342 79 8 chr15 65777907 65778147 -19917607 + MIR SINE MIR 6 262 0 668 239 45 25 chr15 65779065 65779266 -19916488 + L1ME3 LINE L1 5956 6160 -2 816 194 15 10 chr15 65779512 65779708 -19916046 + L1MA6 LINE L1 6093 6289 -11 21 0 0 0 chr15 65779713 65779734 -19916020 + AT_rich Low_complexity Low_complexity 1 21 0 2019 208 35 53 chr15 65780791 65781091 -19914663 - MLT1D LTR MaLR 0 505 216 2241 85 0 53 chr15 65781091 65781409 -19914345 - AluSc SINE Alu -8 301 1 2019 208 35 53 chr15 65781409 65781617 -19914137 - MLT1D LTR MaLR -289 216 6 21 0 0 0 chr15 65782456 65782477 -19913277 + AT_rich Low_complexity Low_complexity 1 21 0 338 244 47 47 chr15 65784020 65784213 -19911541 - Charlie7 DNA MER1_type -1 2611 2419 * 646 277 168 35 chr15 65784212 65784671 -19911083 - Charlie7 DNA MER1_type -1897 715 196 469 235 23 8 chr15 65784829 65784961 -19910793 - Charlie7 DNA MER1_type -2450 162 29 767 195 51 41 chr15 65785842 65786037 -19909717 + MIR SINE MIR 66 262 0 419 268 76 19 chr15 65786295 65786452 -19909302 + MIR SINE MIR 36 201 -61 257 268 85 0 chr15 65786498 65786580 -19909174 - L2 LINE L2 -13 3259 3171 379 303 9 18 chr15 65786621 65786730 -19909024 - L2 LINE L2 -219 3053 2946 21 36 0 0 chr15 65787114 65787142 -19908612 + AT_rich Low_complexity Low_complexity 1 28 0 402 74 0 0 chr15 65787268 65787322 -19908432 + (TG)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr15 65787766 65787794 -19907960 + AT_rich Low_complexity Low_complexity 1 28 0 402 74 0 0 chr15 65787920 65787974 -19907780 + (TG)n Simple_repeat Simple_repeat 2 55 0 383 304 59 7 chr15 65789603 65789738 -19906016 + MIR SINE MIR 3 144 -118 208 245 20 0 chr15 65790217 65790266 -19905488 + CT-rich Low_complexity Low_complexity 5 54 0 1881 140 6 37 chr15 65791732 65792054 -19903700 + AluJb SINE Alu 1 312 0 209 323 177 32 chr15 65792198 65792356 -19903398 - MIR3 SINE MIR -13 195 15 205 49 0 73 chr15 65794245 65794286 -19901468 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 598 303 39 17 chr15 65794604 65794842 -19900912 + MIR SINE MIR 18 260 -2 25 0 0 0 chr15 65794924 65794949 -19900805 + AT_rich Low_complexity Low_complexity 1 25 0 2482 109 40 0 chr15 65796082 65796432 -19899322 + THE1B LTR MaLR 1 364 0 237 263 0 0 chr15 65796813 65796870 -19898884 + T-rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr15 65796880 65796911 -19898843 + AT_rich Low_complexity Low_complexity 1 31 0 4890 159 18 44 chr15 65796912 65798423 -19897331 - L1MA7 LINE L1 0 6291 4817 393 270 31 6 chr15 65798599 65798758 -19896996 - MER103 DNA DNA 0 166 4 318 262 50 57 chr15 65799281 65799422 -19896332 - L1M4 LINE L1 -3321 2825 2686 396 287 93 20 chr15 65800166 65800316 -19895438 - MIR SINE MIR -2 260 100 1200 217 23 27 chr15 65800371 65800671 -19895083 - MLT1D LTR MaLR -206 299 1 22 35 0 0 chr15 65800929 65800958 -19894796 + AT_rich Low_complexity Low_complexity 1 29 0 2042 145 3 7 chr15 65801084 65801394 -19894360 - AluJb SINE Alu -1 311 3 27 29 0 0 chr15 65801403 65801437 -19894317 + AT_rich Low_complexity Low_complexity 1 34 0 3311 38 0 0 chr15 65801437 65801830 -19893924 - L1PA3 LINE L1 -3 6152 5760 299 71 0 0 chr15 65801830 65801872 -19893882 + L1PA3 LINE L1 5731 5772 -383 251 321 72 19 chr15 65801868 65802077 -19893677 - HAL1b LINE L1 -732 616 397 * 227 122 20 0 chr15 65802109 65802158 -19893596 + (CA)n Simple_repeat Simple_repeat 1 50 0 515 146 136 0 chr15 65802811 65802921 -19892833 + MLT1D LTR MaLR 3 127 -378 658 248 15 0 chr15 65803126 65803324 -19892430 - L1PB4 LINE L1 -2 6154 5954 521 350 0 0 chr15 65804284 65804464 -19891290 + (CA)n Simple_repeat Simple_repeat 1 180 0 231 61 0 0 chr15 65804583 65804616 -19891138 + (A)n Simple_repeat Simple_repeat 1 33 0 745 239 6 22 chr15 65805726 65805906 -19889848 + MER45A DNA AcHobo 2 178 0 267 308 150 0 chr15 65806097 65806217 -19889537 - MIR SINE MIR -117 145 8 522 162 0 19 chr15 65806614 65806768 -19888986 + (TA)n Simple_repeat Simple_repeat 1 151 0 305 349 24 35 chr15 65809589 65809758 -19885996 - MIR3 SINE MIR -5 203 37 477 0 0 0 chr15 65810009 65810062 -19885692 + (TG)n Simple_repeat Simple_repeat 1 53 0 2245 125 0 7 chr15 65810862 65811167 -19884587 + AluSx SINE Alu 1 303 -9 656 266 109 5 chr15 65811461 65811653 -19884101 + MIR SINE MIR 41 252 -10 341 239 142 91 chr15 65812208 65812384 -19883370 - MIR SINE MIR -76 186 2 410 352 182 10 chr15 65812571 65812966 -19882788 + L2 LINE L2 2851 3313 0 223 254 0 32 chr15 65814068 65814131 -19881623 + (CATA)n Simple_repeat Simple_repeat 2 62 0 37 39 0 0 chr15 65814336 65814387 -19881367 + AT_rich Low_complexity Low_complexity 1 51 0 7179 89 8 6 chr15 65814387 65815466 -19880288 - L1MA1 LINE L1 0 6302 5221 338 279 32 58 chr15 65815499 65815689 -19880065 - L1MC/D LINE L1 -2368 5440 5256 287 324 49 10 chr15 65815882 65815984 -19879770 - MIR SINE MIR -61 147 42 725 181 9 0 chr15 65815997 65816113 -19879641 + FLAM_A SINE Alu 10 126 -16 335 261 47 74 chr15 65816370 65816585 -19879169 - L1ME2 LINE L1 -183 5981 5773 1317 198 51 26 chr15 65816587 65816900 -19878854 + MLT1A2 LTR MaLR 25 345 -29 8689 162 24 21 chr15 65816910 65818754 -19877000 - L1 LINE L1 -1112 5994 4144 684 278 17 28 chr15 65818752 65819112 -19876642 - L1MEd LINE L1 -5186 1844 1489 * 302 339 122 0 chr15 65819153 65819268 -19876486 - L1MEd LINE L1 -5537 1559 1431 278 303 53 62 chr15 65819332 65819669 -19876085 - L1MEd LINE L1 -5784 1312 979 427 239 164 13 chr15 65823250 65823409 -19872345 + MIR SINE MIR 21 203 -59 442 247 114 38 chr15 65823701 65823804 -19871950 + MIR SINE MIR 86 207 -55 2200 106 3 13 chr15 65823804 65824105 -19871649 + AluSg SINE Alu 1 298 -12 442 247 114 38 chr15 65824105 65824159 -19871595 + MIR SINE MIR 207 255 -7 1027 200 10 0 chr15 65826027 65826227 -19869527 - MER58A DNA MER1_type 0 224 23 281 273 78 0 chr15 65826384 65826461 -19869293 - L2 LINE L2 -1 3312 3230 277 252 102 24 chr15 65826918 65827045 -19868709 - MER90 LTR ERV1 -16 559 423 225 0 0 0 chr15 65827066 65827091 -19868663 + (T)n Simple_repeat Simple_repeat 1 25 0 363 292 31 0 chr15 65827396 65827526 -19868228 - L1ME3A LINE L1 -338 5832 5699 2324 101 16 0 chr15 65827801 65828108 -19867646 - AluSx SINE Alu 0 312 1 1049 279 75 50 chr15 65828118 65828762 -19866992 - L1ME3A LINE L1 -1460 4686 4060 285 29 0 0 chr15 65828762 65828796 -19866958 + (TG)n Simple_repeat Simple_repeat 2 35 0 1049 279 75 50 chr15 65828796 65829425 -19866329 - L1ME3A LINE L1 -2086 4060 3380 1859 159 3 26 chr15 65829538 65829840 -19865914 + AluSq SINE Alu 1 295 -18 765 277 64 40 chr15 65829848 65830502 -19865252 - L1ME3A LINE L1 -3142 3004 2335 299 346 27 108 chr15 65832168 65832500 -19863254 - L2 LINE L2 -39 3233 2929 442 265 126 104 chr15 65832581 65833152 -19862602 - L2 LINE L2 -3 3310 2733 225 0 0 0 chr15 65834620 65834645 -19861109 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 210 71 0 0 chr15 65834966 65834994 -19860760 + (T)n Simple_repeat Simple_repeat 1 28 0 196 226 113 125 chr15 65835914 65836082 -19859672 + MIR SINE MIR 49 214 -48 21 71 0 0 chr15 65836373 65836415 -19859339 + AT_rich Low_complexity Low_complexity 1 42 0 12256 187 34 21 chr15 65836430 65838922 -19856832 + L1PA15-16 LINE L1 2 2461 -4388 2303 108 0 0 chr15 65838922 65839217 -19856537 + AluSg SINE Alu 9 303 -7 12256 187 34 21 chr15 65839217 65840335 -19855419 + L1PA15-16 LINE L1 2461 3563 -3286 2583 66 0 0 chr15 65840335 65840639 -19855115 + AluY SINE Alu 1 304 -7 12256 187 34 21 chr15 65840639 65842826 -19852928 + L1PA15-16 LINE L1 3563 5538 -1311 440 304 45 36 chr15 65842901 65843112 -19852642 + L1MEd LINE L1 893 1110 -5009 2305 81 0 10 chr15 65843112 65843408 -19852346 - AluSc SINE Alu -16 293 1 440 304 45 36 chr15 65843408 65843531 -19852223 + L1MEd LINE L1 1110 1230 -4889 277 295 76 19 chr15 65843766 65843871 -19851883 + MIR3 SINE MIR 6 116 -92 202 184 41 20 chr15 65845305 65845354 -19850400 + GA-rich Low_complexity Low_complexity 4 53 0 3600 69 8 10 chr15 65845357 65845838 -19849916 + L1PA10 LINE L1 5677 6156 -12 1179 289 119 23 chr15 65845891 65846680 -19849074 - L2 LINE L2 0 3313 2450 819 218 33 63 chr15 65846757 65847060 -19848694 - L1M4 LINE L1 -2010 4136 3843 2750 180 89 36 chr15 65847063 65847657 -19848097 - L1MDa LINE L1 -4619 1921 1263 2376 79 3 0 chr15 65847657 65847949 -19847805 + AluSc SINE Alu 1 293 -16 2750 180 89 36 chr15 65847949 65848237 -19847517 - L1MDa LINE L1 -5277 1263 992 889 248 70 36 chr15 65848294 65848681 -19847073 + MLT1C LTR MaLR 61 460 -7 2595 211 164 23 chr15 65848686 65849542 -19846212 - L1MDa LINE L1 -5547 993 18 26 50 0 0 chr15 65850436 65850476 -19845278 + AT_rich Low_complexity Low_complexity 1 40 0 243 300 57 14 chr15 65850481 65850551 -19845203 - L2 LINE L2 0 3272 3200 342 312 241 5 chr15 65850584 65850783 -19844971 + MIR SINE MIR 15 260 -2 539 271 164 43 chr15 65851061 65851434 -19844320 + LTR33 LTR ERVL 1 418 -103 468 254 34 8 chr15 65852358 65852476 -19843278 + MER91C DNA MER1_type 20 140 0 544 324 65 16 chr15 65852506 65852753 -19843001 + MIR SINE MIR 2 260 -2 399 253 11 0 chr15 65852974 65853065 -19842689 - L2 LINE L2 0 3313 3222 549 302 145 20 chr15 65853337 65853585 -19842169 - L2 LINE L2 -16 3256 2978 509 111 44 0 chr15 65853954 65854044 -19841710 - AluSp/q SINE Alu -14 299 206 1819 106 0 4 chr15 65854144 65854379 -19841375 - AluSg SINE Alu -76 234 1 2401 83 0 10 chr15 65854432 65854746 -19841008 - AluY SINE Alu 0 311 1 254 303 11 0 chr15 65856279 65856368 -19839386 + A-rich Low_complexity Low_complexity 1 90 0 361 226 12 0 chr15 65856495 65856579 -19839175 + MER20 DNA MER1_type 1 85 -134 2215 120 7 0 chr15 65856595 65856896 -19838858 + AluSg SINE Alu 1 303 -7 1157 242 65 31 chr15 65856937 65857383 -19838371 + MLT1C LTR MaLR 6 466 -1 427 274 0 0 chr15 65857383 65857485 -19838269 + MER20 DNA MER1_type 118 219 0 213 214 0 0 chr15 65857682 65857724 -19838030 + L2 LINE L2 3271 3312 -1 366 331 42 7 chr15 65857956 65858098 -19837656 + MIR SINE MIR 82 228 -34 284 258 137 32 chr15 65858251 65858375 -19837379 - MIR SINE MIR -17 245 109 1353 203 141 23 chr15 65859169 65859523 -19836231 - MSTD LTR MaLR 0 396 1 2000 149 0 29 chr15 65860568 65860883 -19834871 - AluSx SINE Alu -6 306 1 1735 228 154 32 chr15 65862763 65863321 -19832433 + MLT1E2 LTR MaLR 1 626 0 201 74 0 0 chr15 65864433 65864460 -19831294 + (TG)n Simple_repeat Simple_repeat 1 27 0 226 299 15 0 chr15 65864935 65865002 -19830752 - MIR SINE MIR -63 145 78 853 328 26 9 chr15 65865157 65865499 -19830255 + L3 LINE CR1 1180 1527 -50 10393 200 57 25 chr15 65865978 65870557 -19825197 - L1MA9 LINE L1 -10 7721 2988 1416 295 76 20 chr15 65870654 65871393 -19824361 - L1MA9 LINE L1 -5173 2313 1534 400 339 134 28 chr15 65871540 65872153 -19823601 + L2 LINE L2 1932 2609 -705 266 222 300 0 chr15 65872359 65872449 -19823305 - MIR SINE MIR 0 262 146 327 227 26 35 chr15 65873035 65873151 -19822603 - L1MC4 LINE L1 -1339 6983 1996 189 171 0 0 chr15 65873151 65873186 -19822568 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 677 244 89 22 chr15 65874424 65874649 -19821105 - MIR SINE MIR -21 241 2 203 292 108 67 chr15 65874866 65874986 -19820768 + MIR3 SINE MIR 58 182 -26 494 325 74 65 chr15 65875186 65875755 -19819999 - MLT1K LTR MaLR -3 585 12 21 0 0 0 chr15 65876519 65876540 -19819214 + AT_rich Low_complexity Low_complexity 1 21 0 334 261 81 36 chr15 65876629 65877074 -19818680 + L1MEd LINE L1 910 1414 -4896 225 0 0 0 chr15 65877897 65877922 -19817832 + (A)n Simple_repeat Simple_repeat 1 25 0 329 246 35 0 chr15 65878213 65878327 -19817427 - L1MC4a LINE L1 -1880 5928 5811 1522 203 20 74 chr15 65878331 65878602 -19817152 - L1ME1 LINE L1 -4 6162 5929 2238 119 0 0 chr15 65878602 65878905 -19816849 + AluSq SINE Alu 10 312 -1 1522 203 20 74 chr15 65878905 65879130 -19816624 - L1ME1 LINE L1 -237 5929 5693 6092 177 36 8 chr15 65879244 65881348 -19814406 + L1MA9 LINE L1 3999 6163 -149 1831 191 8 13 chr15 65881547 65881939 -19813815 - L1 LINE L1 -2158 3988 3599 997 261 147 20 chr15 65882131 65882579 -19813175 + MLT1D LTR MaLR 1 505 0 2181 134 0 3 chr15 65882979 65883284 -19812470 + AluSx SINE Alu 5 308 -4 497 311 102 53 chr15 65883764 65884275 -19811479 - L1ME4a LINE L1 -56 6065 5530 10335 113 1 0 chr15 65884430 65885970 -19809784 + L1P LINE L1 3 1544 -4602 270 300 67 8 chr15 65886164 65886284 -19809470 - MER94 DNA DNA -5 129 3 244 395 82 10 chr15 65887136 65887331 -19808423 + L3b LINE CR1 1295 1503 -80 2200 92 20 0 chr15 65888765 65889057 -19806697 + AluY SINE Alu 1 298 -13 187 318 0 0 chr15 65889078 65889122 -19806632 - L2 LINE L2 -33 3239 3196 757 271 13 36 chr15 65889401 65889626 -19806128 - MIR SINE MIR -15 247 28 2094 187 37 9 chr15 65890734 65891194 -19804560 - L1MC3 LINE L1 -139 7646 7174 27866 116 21 58 chr15 65891719 65898110 -19797644 + L1PA7 LINE L1 1 6151 -3 292 331 32 45 chr15 65898239 65898393 -19797361 - MER5B DNA MER1_type 0 178 27 2013 134 3 7 chr15 65899332 65899630 -19796124 - AluSx SINE Alu -15 297 1 506 290 165 9 chr15 65902352 65902576 -19793178 + MIR SINE MIR 3 261 -1 339 356 8 23 chr15 65903228 65903360 -19792394 - L2 LINE L2 -3 3310 3181 2185 130 0 16 chr15 65904589 65904904 -19790850 - AluSg SINE Alu 0 310 1 755 137 25 86 chr15 65905184 65905356 -19790398 + MER53 DNA DNA 1 161 -28 2204 127 3 0 chr15 65905356 65905656 -19790098 - AluSx SINE Alu -11 301 1 755 137 25 86 chr15 65905656 65905680 -19790074 + MER53 DNA DNA 161 185 -4 313 272 44 25 chr15 65905816 65905974 -19789780 - Charlie8 DNA MER1_type -2187 230 70 216 162 0 0 chr15 65906233 65906270 -19789484 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr15 65906953 65906975 -19788779 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr15 65907180 65907218 -19788536 + (TAA)n Simple_repeat Simple_repeat 2 39 0 284 340 161 6 chr15 65907241 65907403 -19788351 - MIR SINE MIR -32 230 44 259 283 98 52 chr15 65908994 65909167 -19786587 + MIR SINE MIR 5 185 -77 1773 118 40 3 chr15 65910024 65910321 -19785433 - L1MA5 LINE L1 -2 6298 5991 339 236 9 0 chr15 65911063 65911169 -19784585 + L1M4 LINE L1 2900 3006 -3140 2144 109 34 0 chr15 65911275 65911569 -19784185 - AluSx SINE Alu -8 304 1 187 267 233 11 chr15 65911753 65911843 -19783911 + L2 LINE L2 3147 3256 -16 607 285 130 39 chr15 65911897 65912336 -19783418 - L2 LINE L2 -1000 2314 1836 241 188 42 31 chr15 65912431 65912527 -19783227 + (TA)n Simple_repeat Simple_repeat 1 97 0 230 279 0 61 chr15 65913382 65913529 -19782225 + CT-rich Low_complexity Low_complexity 1 138 0 274 325 96 38 chr15 65914688 65914928 -19780826 + MIR SINE MIR 3 256 -6 301 336 9 18 chr15 65915061 65915171 -19780583 - MIR SINE MIR -80 128 20 638 316 8 24 chr15 65915716 65915963 -19779791 + MIR SINE MIR 3 245 -17 1870 148 67 22 chr15 65916139 65916498 -19779256 - THE1C LTR MaLR 0 375 1 199 364 15 0 chr15 65916567 65916633 -19779121 + L2 LINE L2 3182 3248 -24 1055 258 60 83 chr15 65917297 65917851 -19777903 - MER77 LTR ERV1 -11 594 54 24 0 0 0 chr15 65918204 65918228 -19777526 + AT_rich Low_complexity Low_complexity 1 24 0 471 254 81 49 chr15 65919575 65919760 -19775994 - MIR SINE MIR -16 246 56 366 243 45 27 chr15 65919760 65919871 -19775883 + MER81 DNA DNA 2 114 0 2122 147 0 3 chr15 65919873 65920187 -19775567 - AluSq SINE Alu 0 313 1 656 252 75 37 chr15 65920509 65920723 -19775031 - MIR SINE MIR -5 257 36 242 192 0 14 chr15 65921177 65921250 -19774504 + CT-rich Low_complexity Low_complexity 1 72 0 1201 112 0 0 chr15 65921250 65921411 -19774343 - AluSg/x SINE Alu -5 307 147 465 219 0 0 chr15 65921426 65921540 -19774214 + CT-rich Low_complexity Low_complexity 3 116 0 207 185 0 56 chr15 65921574 65921628 -19774126 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 216 0 0 0 chr15 65921910 65921934 -19773820 + (TG)n Simple_repeat Simple_repeat 2 25 0 206 346 109 9 chr15 65922584 65922917 -19772837 - L2 LINE L2 -165 3107 2743 25 0 0 0 chr15 65923632 65923657 -19772097 + AT_rich Low_complexity Low_complexity 1 25 0 279 0 0 0 chr15 65924222 65924253 -19771501 + (A)n Simple_repeat Simple_repeat 1 31 0 2069 146 3 0 chr15 65924284 65924592 -19771162 + AluSx SINE Alu 1 309 -3 894 223 44 44 chr15 65925998 65926317 -19769437 + MER33 DNA MER1_type 1 319 -5 501 276 192 6 chr15 65926326 65926482 -19769272 + MER5A DNA MER1_type 4 188 -1 295 291 58 48 chr15 65926557 65926660 -19769094 + L2 LINE L2 3193 3296 -17 382 141 13 13 chr15 65926767 65926845 -19768909 + C-rich Low_complexity Low_complexity 5 82 0 965 122 12 0 chr15 65926851 65927015 -19768739 - MER41B LTR ERV1 -85 550 385 189 257 186 0 chr15 65927365 65927435 -19768319 + L2 LINE L2 3171 3253 -19 203 88 29 0 chr15 65927445 65927479 -19768275 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 197 400 48 0 chr15 65929061 65929166 -19766588 - MIR SINE MIR -62 146 37 393 338 14 14 chr15 65929969 65930176 -19765578 + L1MEc LINE L1 1600 1806 -4590 937 245 88 26 chr15 65930268 65930915 -19764839 + L1MEc LINE L1 2023 2666 -3549 234 0 0 0 chr15 65931268 65931294 -19764460 + (T)n Simple_repeat Simple_repeat 1 26 0 257 285 68 53 chr15 65931756 65932019 -19763735 - L1ME4a LINE L1 -159 5962 5696 317 294 154 35 chr15 65932064 65932207 -19763547 + L2 LINE L2 3112 3271 -1 1823 208 6 6 chr15 65933376 65933741 -19762013 + MLT1A1 LTR MaLR 1 365 0 304 267 13 13 chr15 65933791 65933866 -19761888 - MIR SINE MIR -187 75 1 486 329 21 67 chr15 65934168 65934649 -19761105 - MLT1J LTR MaLR -50 461 3 200 397 96 29 chr15 65934835 65935220 -19760534 + L2 LINE L2 2825 3235 -37 797 164 26 0 chr15 65935583 65935735 -19760019 - L1MA6 LINE L1 -360 5940 5785 222 240 0 0 chr15 65935736 65935786 -19759968 + (TA)n Simple_repeat Simple_repeat 1 50 0 313 289 48 10 chr15 65935786 65935890 -19759864 + L1MC4 LINE L1 6595 6702 -1340 428 339 50 2 chr15 65936308 65936515 -19759239 - MIR SINE MIR -21 241 25 350 164 110 0 chr15 65937378 65937451 -19758303 + AluJb SINE Alu 43 123 -179 390 327 80 17 chr15 65937476 65937655 -19758099 - MIR3 SINE MIR -5 203 13 232 336 100 36 chr15 65939696 65939916 -19755838 - L3 LINE CR1 -64 1513 1280 5327 157 31 11 chr15 65940089 65941812 -19753942 - L1PB2 LINE L1 -6 6145 4378 270 0 0 0 chr15 65941812 65941842 -19753912 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5327 157 31 11 chr15 65941842 65942142 -19753612 - L1PB2 LINE L1 -1773 4378 4085 189 0 0 0 chr15 65942514 65942535 -19753219 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 396 326 55 11 chr15 65943275 65943456 -19752298 - MIR SINE MIR -15 247 59 349 345 42 0 chr15 65943511 65943653 -19752101 - MIR3 SINE MIR -7 201 54 2147 86 33 23 chr15 65944919 65945220 -19750534 + AluY SINE Alu 1 304 -7 239 275 87 7 chr15 65945543 65945681 -19750073 - LTR50 LTR ERVL -164 631 483 250 322 49 39 chr15 65946624 65946829 -19748925 - L1MC/D LINE L1 -2150 5658 5452 494 272 44 58 chr15 65946853 65947059 -19748695 - MIR SINE MIR -56 206 4 189 211 0 0 chr15 65947757 65947814 -19747940 + CT-rich Low_complexity Low_complexity 2 58 0 187 258 43 54 chr15 65948452 65948545 -19747209 + MIR SINE MIR 92 183 -79 22 0 0 0 chr15 65948721 65948743 -19747011 + AT_rich Low_complexity Low_complexity 1 22 0 261 247 49 12 chr15 65950137 65950218 -19745536 + MIR SINE MIR 69 152 -110 599 26 100 13 chr15 65950501 65950731 -19745023 + (TA)n Simple_repeat Simple_repeat 1 250 0 223 233 0 0 chr15 65952541 65952584 -19743170 + (CCA)n Simple_repeat Simple_repeat 1 43 0 449 295 37 37 chr15 65952599 65952789 -19742965 - MIR SINE MIR -3 259 70 264 335 68 56 chr15 65952878 65953039 -19742715 - MIR3 SINE MIR -1 207 45 2075 145 11 2 chr15 65953181 65953667 -19742087 - L1P5 LINE L1 -529 5627 5137 2690 151 0 2 chr15 65953667 65954104 -19741650 + L1PB4 LINE L1 5709 6144 -12 316 222 26 34 chr15 65954367 65954484 -19741270 + MER103 DNA DNA 47 162 -4 370 188 163 0 chr15 65954611 65954691 -19741063 + MIR SINE MIR 7 99 -163 596 279 49 79 chr15 65954696 65955155 -19740599 - LTR16A LTR ERVL 0 450 4 399 197 134 47 chr15 65955155 65955282 -19740472 + MIR SINE MIR 115 252 -10 461 295 116 36 chr15 65955380 65955604 -19740150 - L3 LINE CR1 -603 974 733 624 324 129 20 chr15 65956800 65957204 -19738550 - L3 LINE CR1 -1 1576 1129 309 312 151 56 chr15 65957211 65957548 -19738206 - L2 LINE L2 0 3272 2904 1066 314 130 30 chr15 65957591 65958216 -19737538 - L3 LINE CR1 -542 1035 349 24194 48 15 7 chr15 65958340 65962180 -19733574 + L1PA5 LINE L1 2301 6150 -4 443 218 0 9 chr15 65962182 65962292 -19733462 + L1MA9 LINE L1 6168 6276 -36 303 332 236 5 chr15 65963162 65963361 -19732393 - MIR SINE MIR -16 246 2 188 375 50 0 chr15 65963709 65963789 -19731965 - L3 LINE CR1 -14 1563 1480 4471 145 5 26 chr15 65964808 65965545 -19730209 - MER72 LTR ERV1 0 722 1 446 291 199 0 chr15 65967093 65967244 -19728510 + MER5A DNA MER1_type 9 189 0 1386 229 35 0 chr15 65967367 65967686 -19728068 - MER58B DNA MER1_type -10 331 2 462 352 20 24 chr15 65967911 65968158 -19727596 + MIR SINE MIR 2 247 -15 21 0 0 0 chr15 65968610 65968631 -19727123 + AT_rich Low_complexity Low_complexity 1 21 0 243 271 93 42 chr15 65971147 65971265 -19724489 + L2 LINE L2 3190 3313 0 834 234 81 10 chr15 65971520 65971729 -19724025 + MER58A DNA MER1_type 1 224 0 257 381 7 27 chr15 65972734 65972881 -19722873 + MIR SINE MIR 20 163 -99 2345 139 8 8 chr15 65973509 65973911 -19721843 - L1M1 LINE L1 -530 5773 5372 289 317 49 8 chr15 65976643 65976766 -19718988 - MER5A DNA MER1_type -26 163 36 447 269 138 20 chr15 65977030 65977283 -19718471 + MLT1K LTR MaLR 306 588 0 1880 163 0 0 chr15 65977536 65977836 -19717918 + AluJo SINE Alu 1 300 -12 260 389 58 37 chr15 65978393 65978876 -19716878 - L2 LINE L2 -787 2527 2035 190 167 48 24 chr15 65978906 65978948 -19716806 - MIR SINE MIR -24 238 196 539 269 124 26 chr15 65979118 65979352 -19716402 + MIR SINE MIR 1 257 -5 299 339 11 85 chr15 65979902 65980091 -19715663 + MER5B DNA MER1_type 1 175 -3 431 348 85 9 chr15 65980296 65980520 -19715234 + MIR SINE MIR 8 248 -14 23 0 0 0 chr15 65980523 65980546 -19715208 + AT_rich Low_complexity Low_complexity 1 23 0 796 279 68 79 chr15 65982327 65982881 -19712873 + L2 LINE L2 2742 3313 0 2061 233 90 11 chr15 65983949 65984572 -19711182 + L1ME1 LINE L1 5489 6160 -6 306 254 0 0 chr15 65984878 65984941 -19710813 + L2 LINE L2 3243 3305 -8 337 294 64 0 chr15 65984977 65985086 -19710668 - MIR SINE MIR -114 148 33 392 228 103 114 chr15 65985316 65985579 -19710175 - MIR SINE MIR 0 262 3 213 178 0 0 chr15 65985583 65985628 -19710126 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 65987892 65987920 -19707834 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr15 65987932 65987975 -19707779 + AT_rich Low_complexity Low_complexity 1 43 0 280 308 60 0 chr15 65988304 65988421 -19707333 - MIR SINE MIR -67 195 72 1596 159 0 66 chr15 65989891 65990220 -19705534 + AluJo SINE Alu 16 324 0 184 299 10 93 chr15 65990225 65990322 -19705432 - MER5A DNA MER1_type -44 145 57 339 225 217 0 chr15 65990739 65990868 -19704886 - MER5B DNA MER1_type 0 178 22 12636 98 2 3 chr15 65992130 65994600 -19701154 - L1PA7 LINE L1 -18 6451 3987 12040 111 19 19 chr15 65994600 65994736 -19701018 - L1PA7 LINE L1 -4517 1944 1809 6019 146 23 37 chr15 65994736 65995822 -19699932 + MER11C LTR ERVK 1 1071 0 12040 111 19 19 chr15 65995822 65997614 -19698140 - L1PA7 LINE L1 -4652 1809 8 190 225 25 25 chr15 65997688 65997728 -19698026 + L2 LINE L2 3139 3178 -94 768 158 30 37 chr15 65998609 65998773 -19696981 - L1MA9 LINE L1 -9 6303 6141 608 185 0 0 chr15 66049605 66049859 -19645895 - ACRO1 Satellite acromeric 0 254 1 6356 21 0 1 chr15 66049961 66051170 -19644584 - L1PA2 LINE L1 -141 6014 4807 2416 234 50 18 chr15 66051312 66051988 -19643766 - L1M4 LINE L1 -5452 1090 393 23 33 0 0 chr15 66052411 66052441 -19643313 + AT_rich Low_complexity Low_complexity 1 30 0 430 240 32 48 chr15 66052865 66052990 -19642764 - L2 LINE L2 0 3313 3191 1447 123 0 22 chr15 66053090 66053317 -19642437 - MER57A LTR ERV1 -157 246 25 1858 147 49 38 chr15 66053317 66053664 -19642090 + THE1B LTR MaLR 1 351 -13 10120 95 3 3 chr15 66053671 66055089 -19640665 + THE1B-int LTR MaLR 1 1417 -163 605 301 42 22 chr15 66055191 66055467 -19640287 - L2 LINE L2 -317 2996 2398 363 94 0 18 chr15 66055522 66055734 -19640020 - AluSc SINE Alu -2 297 5 315 263 51 165 chr15 66056396 66056651 -19639103 - MIR SINE MIR -10 252 27 2058 251 47 30 chr15 66057247 66058274 -19637480 - L1M4c LINE L1 -4425 2713 1530 324 208 142 83 chr15 66059424 66059544 -19636210 + L2 LINE L2 3187 3313 0 738 239 37 11 chr15 66059974 66060162 -19635592 + MIR SINE MIR 69 261 -1 706 238 62 10 chr15 66061429 66061622 -19634132 - Charlie8 DNA MER1_type -2132 285 83 569 311 53 18 chr15 66063366 66063591 -19632163 + L3 LINE CR1 885 1117 -460 308 143 0 57 chr15 66063816 66063886 -19631868 + MER34C LTR ERV1 36 101 -484 5495 108 24 29 chr15 66063895 66064767 -19630987 + MER4D LTR ERV1 5 872 0 425 311 131 23 chr15 66064961 66065266 -19630488 + L3 LINE CR1 1133 1470 -107 558 279 146 0 chr15 66065286 66065444 -19630310 + MER5A DNA MER1_type 9 189 0 492 303 60 5 chr15 66065747 66065932 -19629822 + L2 LINE L2 529 723 -2591 655 270 7 0 chr15 66066115 66066267 -19629487 + MER63A DNA MER1_type 53 205 -5 1732 180 3 16 chr15 66067625 66067942 -19627812 + AluSq SINE Alu 1 313 0 26 0 0 0 chr15 66069184 66069210 -19626544 + AT_rich Low_complexity Low_complexity 1 26 0 306 0 0 0 chr15 66069332 66069366 -19626388 + (CA)n Simple_repeat Simple_repeat 1 34 0 253 256 0 90 chr15 66070340 66070418 -19625336 - L2 LINE L2 0 3272 3202 199 306 101 91 chr15 66070917 66071126 -19624628 - L2 LINE L2 -113 3159 2949 212 203 72 43 chr15 66072491 66072560 -19623194 + MIR SINE MIR 11 81 -181 996 241 46 24 chr15 66072569 66072959 -19622795 - MLT1C LTR MaLR 0 390 10 274 305 255 0 chr15 66072960 66073101 -19622653 + MIR SINE MIR 80 256 -6 2135 123 0 7 chr15 66073285 66073585 -19622169 + AluSq SINE Alu 1 298 -15 365 307 207 35 chr15 66073627 66073915 -19621839 - L2 LINE L2 -5 3308 2959 2988 148 64 10 chr15 66073915 66074415 -19621339 - MER1A DNA MER1_type 0 527 1 365 307 207 35 chr15 66074415 66074445 -19621309 - L2 LINE L2 -354 2959 2935 1104 218 57 59 chr15 66075300 66075671 -19620083 + L1ME2 LINE L1 5772 6141 -23 2293 113 0 0 chr15 66076961 66077261 -19618493 - AluSc SINE Alu -9 300 1 206 300 105 67 chr15 66078337 66078547 -19617207 + MIR SINE MIR 32 249 -13 217 230 92 35 chr15 66079698 66079785 -19615969 - MIR3 SINE MIR -15 193 102 407 318 46 26 chr15 66080546 66080697 -19615057 + MIR SINE MIR 13 166 -96 224 233 0 0 chr15 66080818 66080861 -19614893 + L2 LINE L2 3226 3268 -4 1778 157 32 4 chr15 66080892 66081172 -19614582 + AluSq SINE Alu 5 292 -21 746 203 25 12 chr15 66081788 66081951 -19613803 + MER5A DNA MER1_type 2 166 -23 1358 154 0 21 chr15 66081960 66082194 -19613560 + AluJo SINE Alu 78 306 -6 360 324 81 29 chr15 66082808 66082933 -19612821 + ERVL LTR ERVL 1338 1480 -4284 2435 84 0 6 chr15 66082933 66083244 -19612510 - AluSq SINE Alu -3 310 2 360 324 81 29 chr15 66083244 66083328 -19612426 + ERVL LTR ERVL 1480 1558 -4206 257 225 0 14 chr15 66083346 66083417 -19612337 - L1M4 LINE L1 -3750 2396 2327 25 0 0 0 chr15 66083677 66083702 -19612052 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr15 66084160 66084190 -19611564 + AT_rich Low_complexity Low_complexity 1 30 0 5814 223 68 51 chr15 66084229 66085385 -19610369 - L1MC4a LINE L1 -2 7806 6600 333 47 0 0 chr15 66085385 66085428 -19610326 + (CA)n Simple_repeat Simple_repeat 2 44 0 5814 223 68 51 chr15 66085428 66086304 -19609450 - L1MC4a LINE L1 -1208 6600 5740 497 304 63 7 chr15 66086306 66086576 -19609178 - L1 LINE L1 -1828 4318 4034 26 0 0 0 chr15 66086741 66086767 -19608987 + AT_rich Low_complexity Low_complexity 1 26 0 3467 102 29 60 chr15 66087038 66087655 -19608099 - MER4A LTR ERV1 0 600 3 2208 98 27 3 chr15 66087778 66088075 -19607679 + AluSq SINE Alu 1 304 -9 258 310 11 0 chr15 66088601 66088688 -19607066 - MER5A DNA MER1_type -98 91 4 2586 196 31 7 chr15 66090045 66090600 -19605154 + L1MB7 LINE L1 5609 6176 -8 959 123 6 0 chr15 66091103 66091266 -19604488 + (TCC)n Simple_repeat Simple_repeat 2 165 0 496 189 39 0 chr15 66091501 66091628 -19604126 - MER69 DNA AcHobo -5 2521 2390 944 278 49 39 chr15 66091685 66092092 -19603662 - MER69 DNA AcHobo -1997 529 119 194 214 126 117 chr15 66092910 66093013 -19602741 - L2 LINE L2 -7 3265 3162 370 315 8 0 chr15 66093661 66093788 -19601966 + MIR SINE MIR 20 147 -61 249 57 0 0 chr15 66093906 66093941 -19601813 + (T)n Simple_repeat Simple_repeat 1 35 0 4086 91 18 5 chr15 66094620 66095193 -19600561 + L1PA13 LINE L1 5565 6144 -19 1246 127 0 0 chr15 66095372 66095545 -19600209 - AluSg/x SINE Alu -6 304 132 2407 78 3 0 chr15 66095545 66095840 -19599914 - AluSp SINE Alu -17 296 1 276 308 77 0 chr15 66096417 66096508 -19599246 + L2 LINE L2 3215 3312 -1 669 249 32 37 chr15 66096646 66096835 -19598919 - MER5A DNA MER1_type 0 189 2 260 196 196 0 chr15 66096863 66096955 -19598799 + MIR SINE MIR 38 147 -61 2254 83 7 0 chr15 66097056 66097345 -19598409 + AluY SINE Alu 1 291 -20 1785 157 49 16 chr15 66097381 66097750 -19598004 - L1MA9 LINE L1 -4 6308 5928 239 211 33 37 chr15 66099030 66099151 -19596603 - MER5A DNA MER1_type -2 187 9 2361 116 33 43 chr15 66099394 66099792 -19595962 - MER48 LTR ERV1 -4 394 1 685 171 0 16 chr15 66100418 66100541 -19595213 + FLAM_C SINE Alu 1 121 -22 1273 145 17 62 chr15 66100563 66100804 -19594950 + AluJo SINE Alu 71 300 -12 767 208 13 13 chr15 66100809 66100968 -19594786 + FRAM SINE Alu 1 159 -7 446 329 25 8 chr15 66101463 66101668 -19594086 + L1M4c LINE L1 1292 1705 -1038 239 266 0 32 chr15 66102109 66102203 -19593551 + Charlie7 DNA MER1_type 6 96 -2516 232 339 64 18 chr15 66102458 66102567 -19593187 - L2 LINE L2 -1 3271 3158 500 294 175 43 chr15 66102694 66103377 -19592377 - L2 LINE L2 -69 3244 2472 1393 243 135 35 chr15 66104333 66104872 -19590882 - MLT1E LTR MaLR 0 593 1 553 155 10 10 chr15 66105914 66106017 -19589737 + AluJo SINE Alu 33 135 -177 323 225 38 0 chr15 66106098 66106178 -19589576 - L1ME3A LINE L1 -155 6084 6002 1926 101 7 57 chr15 66106355 66106690 -19589064 + AluSx SINE Alu 1 320 0 283 286 70 38 chr15 66106751 66107038 -19588716 + L1MC4 LINE L1 7747 8042 0 190 267 48 76 chr15 66107063 66107168 -19588586 - MIR SINE MIR -73 189 88 288 330 9 45 chr15 66107350 66107462 -19588292 - MIR3 SINE MIR -92 116 9 263 341 66 22 chr15 66108309 66108400 -19587354 + MIR SINE MIR 19 113 -95 21 71 0 0 chr15 66108787 66108829 -19586925 + AT_rich Low_complexity Low_complexity 1 42 0 2056 255 74 61 chr15 66108934 66109050 -19586704 - L2 LINE L2 -15 3298 3185 2274 120 0 0 chr15 66109050 66109349 -19586405 + AluSx SINE Alu 1 299 -13 2056 255 74 61 chr15 66109349 66110284 -19585470 - L2 LINE L2 -128 3185 2235 417 298 74 27 chr15 66110837 66111351 -19584403 - L1ME3A LINE L1 -257 5933 5396 308 275 47 89 chr15 66111633 66111869 -19583885 - L1ME3A LINE L1 -23 6147 5922 261 180 33 0 chr15 66111899 66111960 -19583794 - L1ME3A LINE L1 -219 5951 5889 707 150 0 55 chr15 66111963 66112090 -19583664 + FLAM_C SINE Alu 17 136 -7 247 250 37 56 chr15 66112127 66112235 -19583519 - MLT1H LTR MaLR -16 533 428 28 48 0 0 chr15 66112905 66112947 -19582807 + AT_rich Low_complexity Low_complexity 1 42 0 316 327 35 0 chr15 66112957 66113070 -19582684 - L1ME3A LINE L1 -2313 3902 3786 23 0 0 0 chr15 66113169 66113192 -19582562 + AT_rich Low_complexity Low_complexity 1 23 0 229 295 54 60 chr15 66113268 66113434 -19582320 - MLT1L LTR MaLR -102 513 349 399 198 0 144 chr15 66114721 66114832 -19580922 + MER2 DNA MER2_type 4 98 -247 219 276 125 79 chr15 66115944 66116096 -19579658 - MIR SINE MIR -71 191 33 274 311 74 113 chr15 66116971 66117280 -19578474 - L2 LINE L2 0 3272 2976 471 168 32 11 chr15 66117327 66117422 -19578332 - MLT1C LTR MaLR 0 467 371 1599 226 53 20 chr15 66118707 66119159 -19576595 - MLT1C LTR MaLR 0 467 1 2735 228 34 3 chr15 66119889 66120473 -19575281 - MER77 LTR ERV1 0 605 4 5054 185 26 6 chr15 66120515 66122101 -19573653 + L1P5 LINE L1 4123 5744 -410 242 100 25 0 chr15 66122201 66122241 -19573513 + L1P5 LINE L1 5749 5789 -365 * 245 246 0 0 chr15 66122231 66122300 -19573454 + L1MC4 LINE L1 6635 6703 -1339 274 103 0 35 chr15 66122310 66122368 -19573386 + (TA)n Simple_repeat Simple_repeat 1 56 0 1974 115 79 3 chr15 66122380 66122720 -19573034 + L1PB3 LINE L1 5782 6147 -7 380 200 11 0 chr15 66123617 66123712 -19572042 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 32307 39 31 2 chr15 66123821 66128027 -19567727 + L1P LINE L1 1 4330 -1816 1428 269 39 8 chr15 66128127 66128736 -19567018 - L1ME3A LINE L1 -3946 2450 1823 287 200 15 0 chr15 66129400 66129465 -19566289 - MLT1H LTR MaLR -5 544 479 432 253 79 57 chr15 66129583 66129728 -19566026 - MLT1H LTR MaLR -261 288 133 2395 129 20 0 chr15 66129728 66130085 -19565669 - THE1B LTR MaLR 0 364 1 432 253 79 57 chr15 66130085 66130204 -19565550 - MLT1H LTR MaLR -416 133 18 728 256 76 33 chr15 66130255 66130594 -19565160 + MLT1I LTR MaLR 47 370 -39 1359 113 0 26 chr15 66130693 66130922 -19564832 - L1PA13 LINE L1 -2 6161 5939 299 286 64 64 chr15 66130956 66131159 -19564595 + L2 LINE L2 1714 1916 -1398 326 322 58 62 chr15 66131683 66131925 -19563829 + MIR SINE MIR 20 260 -2 207 314 0 0 chr15 66133053 66133104 -19562650 + MIR3 SINE MIR 106 156 -52 259 216 59 0 chr15 66133392 66133443 -19562311 - MIR SINE MIR -58 150 97 293 302 48 26 chr15 66133680 66133869 -19561885 + L1M4b LINE L1 11 203 -6656 423 56 0 0 chr15 66133945 66133999 -19561755 + (CA)n Simple_repeat Simple_repeat 1 54 0 2477 147 52 5 chr15 66134076 66134484 -19561270 - MSTA LTR MaLR 0 428 2 330 355 45 25 chr15 66134534 66134734 -19561020 + L1M4b LINE L1 1029 1232 -5623 572 251 53 21 chr15 66134840 66135083 -19560671 + L1M4b LINE L1 1328 1578 -5281 407 152 36 18 chr15 66135116 66135228 -19560526 + GA-rich Low_complexity Low_complexity 2 115 0 629 250 30 38 chr15 66135234 66135498 -19560256 + L1M4b LINE L1 1638 1899 -4956 2677 311 67 18 chr15 66135519 66137087 -19558667 + L1M4b LINE L1 2919 4530 -2427 2948 163 24 11 chr15 66137087 66137622 -19558132 + L1MC1 LINE L1 5788 6329 -4 400 288 37 53 chr15 66137848 66138091 -19557663 - L2 LINE L2 0 3313 3075 200 322 0 0 chr15 66138068 66138127 -19557627 - L2 LINE L2 -653 2661 2603 * 470 121 0 0 chr15 66138229 66138295 -19557459 - AluS SINE Alu -247 66 1 283 269 62 75 chr15 66139827 66139987 -19555767 + MIR SINE MIR 58 215 -47 396 252 161 50 chr15 66141528 66141746 -19554008 - MIR SINE MIR -14 248 7 61 37 0 0 chr15 66143989 66144071 -19551683 + AT_rich Low_complexity Low_complexity 1 82 0 257 265 41 41 chr15 66144453 66144600 -19551154 - L1ME LINE L1 -418 5703 5557 25 0 0 0 chr15 66145002 66145027 -19550727 + AT_rich Low_complexity Low_complexity 1 25 0 405 273 64 27 chr15 66145497 66145827 -19549927 - L1ME LINE L1 -1714 4432 4091 573 317 25 67 chr15 66145948 66146188 -19549566 - MIR SINE MIR -32 230 1 29 60 0 0 chr15 66146389 66146439 -19549315 + AT_rich Low_complexity Low_complexity 1 50 0 474 70 0 0 chr15 66146443 66146514 -19549240 + (TATG)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr15 66146593 66146615 -19549139 + AT_rich Low_complexity Low_complexity 1 22 0 2522 131 55 0 chr15 66147083 66147487 -19548267 - MSTB LTR MaLR 0 426 1 330 329 41 46 chr15 66148092 66148505 -19547249 + L1MEd LINE L1 423 833 -5286 468 249 41 57 chr15 66148545 66148790 -19546964 + L1MEd LINE L1 971 1211 -4908 272 303 20 47 chr15 66149163 66149460 -19546294 - L1ME4a LINE L1 -223 5898 5610 2196 100 0 0 chr15 66149568 66149847 -19545907 + AluSq SINE Alu 1 279 -34 255 31 0 0 chr15 66149847 66149879 -19545875 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 66150514 66150535 -19545219 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 191 308 77 69 chr15 66151072 66151202 -19544552 - L2 LINE L2 0 3272 3142 650 141 0 0 chr15 66151235 66151334 -19544420 + FRAM SINE Alu 64 162 -14 348 322 56 14 chr15 66152504 66152647 -19543107 - MIR SINE MIR -94 168 20 681 301 10 7 chr15 66152703 66152922 -19542832 + MIR SINE MIR 38 257 -5 672 92 0 9 chr15 66155566 66155784 -19539970 + AluSg SINE Alu 1 304 -8 982 198 35 0 chr15 66156745 66156977 -19538777 - L1MA8 LINE L1 -5 6286 6047 25 51 0 0 chr15 66157234 66157273 -19538481 + AT_rich Low_complexity Low_complexity 1 39 0 658 313 112 60 chr15 66157653 66158751 -19537003 - L1M4 LINE L1 -1303 4843 3677 2208 126 7 3 chr15 66159246 66159614 -19536140 - AluSx SINE Alu 0 369 1 638 321 15 34 chr15 66161337 66161602 -19534152 - MIR SINE MIR 0 262 3 193 297 66 22 chr15 66162013 66162104 -19533650 - MIR SINE MIR -80 182 88 183 129 0 0 chr15 66162644 66162675 -19533079 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 696 161 29 29 chr15 66163031 66163168 -19532586 - FLAM_C SINE Alu -1 142 6 2036 284 37 10 chr15 66163322 66163923 -19531831 - L2 LINE L2 -1566 1748 1132 652 249 13 42 chr15 66164485 66164702 -19531052 + MLT1J LTR MaLR 1 173 -277 386 316 81 35 chr15 66165456 66165630 -19530124 - MER5A DNA MER1_type -1 188 7 203 292 21 0 chr15 66165851 66165899 -19529855 + MIR SINE MIR 57 105 -157 796 227 22 65 chr15 66167149 66167378 -19528376 + MER20 DNA MER1_type 1 219 0 340 211 87 142 chr15 66168470 66168793 -19526961 - MER102b DNA MER1_type -3 338 34 229 211 0 19 chr15 66169833 66169885 -19525869 + CT-rich Low_complexity Low_complexity 5 55 0 401 226 49 10 chr15 66170286 66170388 -19525366 + MIR SINE MIR 91 196 -66 372 191 18 9 chr15 66172354 66172464 -19523290 + (TA)n Simple_repeat Simple_repeat 1 111 0 193 246 175 53 chr15 66172619 66172733 -19523021 + L2 LINE L2 3186 3313 0 825 301 33 21 chr15 66176183 66176519 -19519235 + LTR16A LTR ERVL 111 450 0 1646 199 44 41 chr15 66176769 66177181 -19518573 - MLT1C LTR MaLR 0 467 55 669 223 64 92 chr15 66177485 66177736 -19518018 - MIR SINE MIR 0 262 19 356 339 18 48 chr15 66177751 66177919 -19517835 + MIR3 SINE MIR 1 163 -45 39253 62 7 4 chr15 66178059 66184183 -19511571 - L1PA5 LINE L1 -3 6151 11 228 146 0 0 chr15 66184666 66184707 -19511047 - L1MCa LINE L1 -4379 2047 2007 397 342 101 4 chr15 66184745 66184973 -19510781 + MIR SINE MIR 3 252 -10 201 260 182 26 chr15 66185090 66185167 -19510587 + MER5B DNA MER1_type 88 176 -2 294 264 58 115 chr15 66185641 66185815 -19509939 - MER5A DNA MER1_type -8 181 18 441 163 265 48 chr15 66186539 66186686 -19509068 + MER5A DNA MER1_type 8 186 -3 1223 209 139 0 chr15 66187066 66187339 -19508415 + AluSx SINE Alu 2 312 0 1090 148 22 43 chr15 66187758 66187988 -19507766 + THE1B LTR MaLR 140 364 0 244 33 0 0 chr15 66187988 66188017 -19507737 - MER57A LTR ERV1 -374 29 1 497 364 101 14 chr15 66188226 66188594 -19507160 + L3 LINE CR1 681 1080 -497 275 328 194 22 chr15 66188668 66188982 -19506772 - L2 LINE L2 -508 2806 2439 352 279 81 81 chr15 66189601 66189636 -19506118 - L1ME4a LINE L1 -212 5909 5875 1534 109 22 8 chr15 66189636 66189903 -19505851 - L1MA5 LINE L1 0 6300 6030 352 279 81 81 chr15 66189903 66190164 -19505590 - L1ME4a LINE L1 -245 5876 5613 1080 166 58 10 chr15 66191054 66191259 -19504495 - MER20 DNA MER1_type -4 215 1 202 311 54 0 chr15 66191287 66191361 -19504393 + MIR3 SINE MIR 105 182 -26 5119 38 2 11 chr15 66191461 66192094 -19503660 + L1PA4 LINE L1 5529 6155 0 27 29 0 0 chr15 66192096 66192130 -19503624 + AT_rich Low_complexity Low_complexity 1 34 0 5492 158 18 24 chr15 66192233 66194282 -19501472 - L1PA16 LINE L1 -10 6156 4125 1201 189 125 23 chr15 66194470 66194734 -19501020 - AluJo SINE Alu -8 294 4 237 220 0 0 chr15 66195231 66195281 -19500473 + CT-rich Low_complexity Low_complexity 1 50 0 480 216 97 43 chr15 66195406 66195591 -19500163 - MIR SINE MIR -1 261 67 1417 239 14 6 chr15 66195591 66195938 -19499816 - MER4D LTR ERV1 -10 893 544 655 224 18 0 chr15 66195934 66196106 -19499648 - MER4E LTR ERV1 -614 165 1 * 457 304 64 12 chr15 66196215 66196386 -19499368 - MIR SINE MIR -75 187 8 186 43 0 0 chr15 66198086 66198109 -19497645 + (TA)n Simple_repeat Simple_repeat 1 23 0 3225 131 14 10 chr15 66198230 66198735 -19497019 - MER84 LTR ERV1 0 507 1 224 122 24 0 chr15 66198785 66198826 -19496928 + CT-rich Low_complexity Low_complexity 1 42 0 406 229 50 29 chr15 66198859 66198999 -19496755 - L1MC4 LINE L1 -114 7928 7786 2855 142 73 19 chr15 66199025 66199292 -19496462 - LTR49 LTR ERV1 0 595 344 2516 110 13 8 chr15 66199292 66199665 -19496089 + THE1C LTR MaLR 1 375 0 2855 142 73 19 chr15 66199665 66199962 -19495792 - LTR49 LTR ERV1 -251 344 1 1517 210 84 53 chr15 66199982 66200270 -19495484 - L1MC4a LINE L1 -122 7686 7374 4248 191 53 11 chr15 66200270 66201097 -19494657 - MER21B LTR ERV1 -1 862 1 1517 210 84 53 chr15 66201097 66201317 -19494437 - L1MC4a LINE L1 -434 7374 7162 3888 144 44 9 chr15 66201317 66202004 -19493750 - MER50 LTR ERV1 -23 711 1 1272 249 76 19 chr15 66202032 66202607 -19493147 - L1MC4 LINE L1 -724 7164 6481 906 213 84 27 chr15 66202686 66202982 -19492772 - L1ME1 LINE L1 -15 6151 5839 858 261 25 20 chr15 66202985 66202996 -19492758 - L1M4 LINE L1 -2292 3854 3845 1600 176 55 21 chr15 66202996 66203285 -19492469 - AluJo SINE Alu -13 299 1 858 261 25 20 chr15 66203285 66203630 -19492124 - L1M4 LINE L1 -2301 3845 3496 1754 289 94 30 chr15 66203910 66204653 -19491101 + L2 LINE L2 1817 2607 -707 1044 198 77 79 chr15 66204711 66205090 -19490664 - LTR8A LTR ERV1 0 727 350 762 184 0 59 chr15 66205091 66205243 -19490511 + AluJo SINE Alu 1 143 -169 244 203 29 14 chr15 66205344 66205413 -19490341 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 328 281 12 0 chr15 66205479 66205561 -19490193 - MER63 DNA MER1_type 0 1061 979 448 149 0 0 chr15 66205565 66205639 -19490115 - MER63 DNA MER1_type -313 749 676 1443 216 37 21 chr15 66205807 66206182 -19489572 - MER89 LTR ERV1 0 559 179 259 153 68 0 chr15 66206187 66206246 -19489508 - MER89 LTR ERV1 -494 65 3 2680 207 58 14 chr15 66206257 66206889 -19488865 - MER89-int LTR ERV1 -9 6792 6133 434 286 79 59 chr15 66207029 66207232 -19488522 + L3 LINE CR1 1363 1569 -8 343 357 80 5 chr15 66207874 66208073 -19487681 + L3 LINE CR1 1050 1263 -314 225 200 0 0 chr15 66209281 66209326 -19486428 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 301 310 51 7 chr15 66209583 66209721 -19486033 - MIR SINE MIR -62 146 16 222 236 0 0 chr15 66209813 66209868 -19485886 + CT-rich Low_complexity Low_complexity 1 55 0 278 241 28 83 chr15 66210037 66210145 -19485609 + MIR SINE MIR 158 259 -3 222 62 0 0 chr15 66211600 66211632 -19484122 + (TTG)n Simple_repeat Simple_repeat 2 33 0 435 336 24 43 chr15 66212033 66212284 -19483470 - MIR SINE MIR -5 257 6 29 0 0 0 chr15 66212481 66212510 -19483244 + AT_rich Low_complexity Low_complexity 1 29 0 2541 80 3 0 chr15 66212554 66212866 -19482888 - AluSp SINE Alu 0 313 1 299 113 19 0 chr15 66213518 66213571 -19482183 + (TG)n Simple_repeat Simple_repeat 1 54 0 2179 134 0 0 chr15 66213617 66213924 -19481830 + AluSq SINE Alu 1 307 -6 198 71 0 0 chr15 66214439 66214467 -19481287 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 262 421 87 0 chr15 66215075 66215258 -19480496 + L2 LINE L2 3072 3270 -2 2789 193 224 35 chr15 66216122 66217013 -19478741 + MER52A LTR ERV1 46 1105 -650 25 0 0 0 chr15 66217388 66217413 -19478341 + AT_rich Low_complexity Low_complexity 1 25 0 189 121 0 0 chr15 66218103 66218136 -19477618 + (TTA)n Simple_repeat Simple_repeat 2 34 0 651 232 25 141 chr15 66218862 66218903 -19476851 - MIR SINE MIR 0 262 218 2253 102 20 3 chr15 66218903 66219197 -19476557 - AluSg SINE Alu -11 299 1 651 232 25 141 chr15 66219197 66219439 -19476315 - MIR SINE MIR -44 218 12 22 0 0 0 chr15 66220216 66220238 -19475516 + AT_rich Low_complexity Low_complexity 1 22 0 203 213 0 16 chr15 66220715 66220776 -19474978 + GA-rich Low_complexity Low_complexity 2 61 0 324 204 31 111 chr15 66221154 66221171 -19474583 - L1MA10 LINE L1 -9 6325 6309 633 270 39 53 chr15 66221171 66221518 -19474236 - L1ME1 LINE L1 -13 6153 5810 818 296 132 24 chr15 66221577 66221955 -19473799 + L2 LINE L2 2895 3313 0 577 332 133 32 chr15 66221948 66222544 -19473210 + L3 LINE CR1 441 1096 -481 * 22 0 0 0 chr15 66224389 66224411 -19471343 + AT_rich Low_complexity Low_complexity 1 22 0 843 103 0 0 chr15 66224548 66224665 -19471089 + AluY SINE Alu 192 308 -3 792 264 96 30 chr15 66224707 66225041 -19470713 - LTR33 LTR ERVL -3 518 163 13942 184 29 9 chr15 66225072 66230381 -19465373 - L1PB1 LINE L1 0 6867 1392 1090 169 0 0 chr15 66230378 66230573 -19465181 - L1PB1 LINE L1 -6666 197 3 * 400 337 43 5 chr15 66230577 66230761 -19464993 - LTR33 LTR ERVL -330 191 1 239 355 55 0 chr15 66230761 66230871 -19464883 - MIR SINE MIR -57 205 90 2745 218 68 40 chr15 66231584 66232553 -19463201 - L1MC4 LINE L1 -1 8041 7046 519 222 6 17 chr15 66233724 66233900 -19461854 + C-rich Low_complexity Low_complexity 2 175 0 255 235 47 24 chr15 66233900 66233985 -19461769 + CT-rich Low_complexity Low_complexity 2 88 0 420 258 22 12 chr15 66234095 66234342 -19461412 + CT-rich Low_complexity Low_complexity 1 249 0 216 158 0 0 chr15 66234362 66234400 -19461354 + CT-rich Low_complexity Low_complexity 4 41 0 417 289 16 23 chr15 66234671 66234799 -19460955 + L2 LINE L2 3187 3313 0 659 280 25 47 chr15 66235249 66235485 -19460269 - L2 LINE L2 -1133 2181 1951 695 318 29 8 chr15 66235647 66235892 -19459862 + MIR SINE MIR 3 252 -10 1471 146 57 23 chr15 66235896 66236197 -19459557 + THE1B LTR MaLR 1 311 -53 5784 124 9 23 chr15 66236197 66237696 -19458058 + L1PA8 LINE L1 4704 6172 0 426 145 0 0 chr15 66237698 66237767 -19457987 + THE1B LTR MaLR 307 375 0 270 284 126 24 chr15 66237783 66237910 -19457844 + MIR SINE MIR 123 262 0 813 229 15 26 chr15 66239534 66239770 -19455984 + MLT1D LTR MaLR 252 503 -2 316 78 26 39 chr15 66239896 66239973 -19455781 + (TA)n Simple_repeat Simple_repeat 1 76 0 1047 328 56 7 chr15 66239988 66240543 -19455211 + ERVL LTR ERVL 2757 3338 -2426 40 0 0 0 chr15 66240744 66240784 -19454970 + AT_rich Low_complexity Low_complexity 1 40 0 281 335 82 0 chr15 66240806 66240964 -19454790 - MER20B DNA MER1_type -22 197 26 613 244 65 65 chr15 66241100 66241346 -19454408 - L1ME3 LINE L1 0 6170 5925 355 348 82 18 chr15 66241578 66241860 -19453894 + ERVL LTR ERVL 4228 4527 -1237 2566 118 0 6 chr15 66241868 66242234 -19453520 - THE1B LTR MaLR 0 364 1 10270 107 14 30 chr15 66242239 66243839 -19451915 - THE1B-int LTR MaLR -5 1575 1 1877 106 42 7 chr15 66243839 66244123 -19451631 - THE1B LTR MaLR 0 364 71 7220 48 0 1 chr15 66244231 66245270 -19450484 + L1PA5 LINE L1 5118 6153 -1 24 32 0 0 chr15 66245347 66245378 -19450376 + AT_rich Low_complexity Low_complexity 1 31 0 778 347 52 30 chr15 66246087 66246450 -19449304 - L2 LINE L2 -5 3267 2897 251 300 200 27 chr15 66247022 66247132 -19448622 + MIR3 SINE MIR 45 173 -35 330 303 126 55 chr15 66247310 66247548 -19448206 + MIR SINE MIR 5 259 -3 21 0 0 0 chr15 66248714 66248735 -19447019 + AT_rich Low_complexity Low_complexity 1 21 0 359 331 21 14 chr15 66249003 66249148 -19446606 + MER5A DNA MER1_type 1 146 -43 28 48 0 0 chr15 66249568 66249610 -19446144 + AT_rich Low_complexity Low_complexity 1 42 0 329 324 125 0 chr15 66250833 66250969 -19444785 - MIR SINE MIR -6 256 104 189 147 0 0 chr15 66251430 66251464 -19444290 + (T)n Simple_repeat Simple_repeat 1 34 0 262 149 0 21 chr15 66253219 66253266 -19442488 - MIR SINE MIR -123 85 40 2432 100 3 0 chr15 66253376 66253686 -19442068 - AluSp SINE Alu -2 311 1 1852 149 3 30 chr15 66253696 66253991 -19441763 - AluJb SINE Alu -25 287 1 350 221 62 26 chr15 66254058 66254171 -19441583 - MER103 DNA DNA -48 118 2 1983 192 10 74 chr15 66254288 66255009 -19440745 - L1M4 LINE L1 -1824 4322 3709 207 344 28 72 chr15 66255316 66255496 -19440258 + MIR SINE MIR 47 218 -44 196 273 84 133 chr15 66255536 66255858 -19439896 + L2 LINE L2 2951 3256 -16 516 304 37 21 chr15 66256287 66256478 -19439276 + MIR SINE MIR 54 247 -15 2207 110 3 0 chr15 66256478 66256770 -19438984 - AluSg SINE Alu -17 293 1 274 270 72 53 chr15 66256778 66256930 -19438824 + L2 LINE L2 3159 3313 0 185 143 0 0 chr15 66257035 66257063 -19438691 - L2 LINE L2 -20 3252 3225 21 0 0 0 chr15 66257194 66257215 -19438539 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr15 66257235 66257268 -19438486 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr15 66257350 66257372 -19438382 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1961 137 7 3 chr15 66257490 66257775 -19437979 + AluSq SINE Alu 1 286 -27 24 0 0 0 chr15 66257775 66257799 -19437955 + AT_rich Low_complexity Low_complexity 1 24 0 322 332 50 41 chr15 66258603 66258823 -19436931 + MIR SINE MIR 30 251 -11 395 296 148 6 chr15 66259079 66259248 -19436506 + MIR SINE MIR 66 258 -4 1225 192 45 75 chr15 66259358 66259800 -19435954 + MLT2B1 LTR ERVL 1 475 -40 254 206 15 15 chr15 66259828 66259964 -19435790 + (TA)n Simple_repeat Simple_repeat 2 137 0 337 82 0 0 chr15 66259987 66260036 -19435718 + MLT2B1 LTR ERVL 464 512 -8 509 262 42 54 chr15 66260040 66260208 -19435546 - MIR SINE MIR -71 191 26 299 266 80 9 chr15 66260324 66260437 -19435317 - LTR67 LTR ERVL -3 554 434 594 294 0 0 chr15 66260695 66260841 -19434913 + MIR SINE MIR 31 176 -86 2180 118 0 10 chr15 66261740 66262058 -19433696 + AluSx SINE Alu 1 315 0 4839 132 21 4 chr15 66262499 66263309 -19432445 + L1PA16 LINE L1 5341 6164 -2 342 282 55 18 chr15 66263569 66263679 -19432075 - L2 LINE L2 0 3313 3200 640 180 75 25 chr15 66263886 66264047 -19431707 + MER96B DNA MER1_type? 67 235 -182 220 401 21 7 chr15 66264285 66264427 -19431327 + MIR SINE MIR 1 144 -118 396 290 28 0 chr15 66264725 66264832 -19430922 + MIR3 SINE MIR 99 208 0 21 0 0 0 chr15 66265155 66265176 -19430578 + AT_rich Low_complexity Low_complexity 1 21 0 1689 161 29 7 chr15 66265730 66266009 -19429745 + AluJo SINE Alu 1 285 -27 333 332 117 15 chr15 66266046 66266251 -19429503 - MIR SINE MIR -35 227 2 13372 64 2 15 chr15 66266478 66268706 -19427048 - L1P2 LINE L1 -404 5750 3552 21 0 0 0 chr15 66268840 66268861 -19426893 + AT_rich Low_complexity Low_complexity 1 21 0 629 104 0 0 chr15 66268875 66268971 -19426783 - L1MA5 LINE L1 -10 6290 6195 4519 117 31 4 chr15 66269231 66269932 -19425822 - L1PA13 LINE L1 0 6163 5444 1290 155 4 0 chr15 66269932 66270177 -19425577 + L1P LINE L1 4949 5194 -952 2327 125 0 0 chr15 66271981 66272292 -19423462 - AluSx SINE Alu -1 311 1 198 289 0 0 chr15 66274974 66275026 -19420728 - L2 LINE L2 -50 3263 3212 413 277 18 9 chr15 66276071 66276183 -19419571 - MIR SINE MIR -71 191 79 506 361 85 43 chr15 66276676 66277188 -19418566 + L2 LINE L2 2742 3272 0 1025 191 0 6 chr15 66277285 66277458 -19418296 + AluJb SINE Alu 3 174 -138 296 328 26 0 chr15 66277561 66277677 -19418077 + MIR SINE MIR 134 252 -10 212 200 40 20 chr15 66279396 66279446 -19416308 - MIR SINE MIR -1 261 211 406 273 110 0 chr15 66279572 66279726 -19416028 - MER69A DNA AcHobo -4 173 3 1946 143 0 11 chr15 66279808 66280180 -19415574 - L1P LINE L1 -795 5351 4984 2875 70 18 0 chr15 66280180 66280561 -19415193 + L1PA10 LINE L1 5775 6165 -3 314 269 83 46 chr15 66281092 66281200 -19414554 - L2 LINE L2 -1 3271 3160 230 384 67 6 chr15 66281221 66281385 -19414369 - L2 LINE L2 -606 2708 2535 25 51 0 0 chr15 66281831 66281870 -19413884 + AT_rich Low_complexity Low_complexity 1 39 0 503 256 60 70 chr15 66282367 66282727 -19413027 - L1MC/D LINE L1 -743 5403 5175 360 0 0 0 chr15 66282843 66282883 -19412871 + (TG)n Simple_repeat Simple_repeat 1 40 0 393 251 44 66 chr15 66283005 66283232 -19412522 - L1MC/D LINE L1 -1014 5132 4911 27 49 0 0 chr15 66283408 66283449 -19412305 + AT_rich Low_complexity Low_complexity 1 41 0 434 307 64 52 chr15 66283508 66283760 -19411994 - L1MC/D LINE L1 -1430 4716 4462 7265 103 4 23 chr15 66284045 66285137 -19410617 - MER11C LTR ERVK 0 1071 1 1030 197 5 0 chr15 66285295 66285493 -19410261 + MLT1A1 LTR MaLR 167 365 0 1425 259 97 41 chr15 66285493 66286013 -19409741 - L1ME LINE L1 -368 5802 5312 198 0 0 0 chr15 66286013 66286035 -19409719 + (CA)n Simple_repeat Simple_repeat 2 23 0 1425 259 97 41 chr15 66286035 66286747 -19409007 - L1ME LINE L1 -858 5312 4483 2214 109 0 19 chr15 66286747 66287058 -19408696 - AluSx SINE Alu -5 307 3 1425 259 97 41 chr15 66287058 66287168 -19408586 - L1ME LINE L1 -1687 4483 4381 22 0 0 0 chr15 66288315 66288337 -19407417 + AT_rich Low_complexity Low_complexity 1 22 0 2222 119 0 3 chr15 66289721 66290023 -19405731 - AluSx SINE Alu -11 301 1 690 297 67 11 chr15 66290071 66290315 -19405439 + MIR SINE MIR 9 260 -2 312 336 50 14 chr15 66290514 66290654 -19405100 - MER5A DNA MER1_type 0 189 45 245 70 105 0 chr15 66290972 66291029 -19404725 + L1MD3 LINE L1 7933 7995 0 209 244 0 0 chr15 66291406 66291447 -19404307 - MER5A DNA MER1_type -82 107 67 2254 112 23 0 chr15 66291455 66291760 -19403994 - AluSx SINE Alu 0 312 1 1502 64 0 0 chr15 66292201 66292389 -19403365 - L1PA3 LINE L1 -3 6152 5965 23 0 0 0 chr15 66292529 66292552 -19403202 + AT_rich Low_complexity Low_complexity 1 23 0 363 240 45 7 chr15 66292992 66293138 -19402616 - L1ME LINE L1 -493 5628 5473 2255 170 84 71 chr15 66293218 66293882 -19401872 - L1MA9 LINE L1 -39 6273 5601 211 382 36 9 chr15 66294382 66294492 -19401262 - L2 LINE L2 -5 3267 3155 367 245 110 149 chr15 66294586 66294994 -19400760 - L2 LINE L2 0 3313 2922 372 94 0 0 chr15 66296436 66296489 -19399265 + (CA)n Simple_repeat Simple_repeat 2 54 0 1957 155 7 0 chr15 66297808 66297821 -19397933 - AluSx SINE Alu -13 299 288 207 0 0 0 chr15 66297821 66297844 -19397910 + (TA)n Simple_repeat Simple_repeat 1 23 0 1957 155 7 0 chr15 66297844 66298127 -19397627 - AluSx SINE Alu -24 288 1 807 153 0 0 chr15 66298753 66298871 -19396883 + FLAM_C SINE Alu 1 118 -25 198 295 16 0 chr15 66299287 66299348 -19396406 - MIR SINE MIR -55 153 92 4365 185 30 12 chr15 66299367 66300727 -19395027 + L1MB5 LINE L1 4777 6166 -8 2255 111 0 3 chr15 66301681 66301979 -19393775 - AluSq SINE Alu -16 297 1 257 325 33 40 chr15 66302121 66302272 -19393482 - MIR SINE MIR -57 205 56 877 225 53 5 chr15 66302732 66302941 -19392813 + MER58A DNA MER1_type 6 224 0 454 308 98 19 chr15 66303062 66303276 -19392478 + MIR SINE MIR 13 243 -19 244 362 43 12 chr15 66304614 66304777 -19390977 - MIR SINE MIR -2 260 93 344 58 0 19 chr15 66305243 66305295 -19390459 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 610 14 0 0 chr15 66305295 66305367 -19390387 - L1PA3 LINE L1 -24 6131 6060 414 0 0 0 chr15 66307404 66307450 -19388304 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 413 284 28 0 chr15 66308394 66308503 -19387251 + L2 LINE L2 3149 3260 -12 350 379 25 15 chr15 66308864 66309062 -19386692 + MIR SINE MIR 32 231 -31 1722 127 77 44 chr15 66309223 66309586 -19386168 + THE1C LTR MaLR 1 375 0 927 209 0 29 chr15 66309833 66310039 -19385715 + MER20 DNA MER1_type 1 200 -19 1049 220 6 68 chr15 66311448 66311784 -19383970 + MLT1B LTR MaLR 76 390 0 187 262 0 0 chr15 66312667 66312709 -19383045 - L2 LINE L2 -10 3303 3262 194 264 0 19 chr15 66313048 66313101 -19382653 + MIR SINE MIR 200 251 -11 210 354 28 49 chr15 66313750 66313894 -19381860 + L3 LINE CR1 327 467 -1110 311 304 96 27 chr15 66314005 66314186 -19381568 + MIR SINE MIR 7 189 -32 262 203 0 17 chr15 66314796 66314855 -19380899 + L2 LINE L2 3256 3313 0 587 243 124 15 chr15 66314871 66315073 -19380681 + MER58A DNA MER1_type 1 224 0 285 270 191 28 chr15 66315137 66315326 -19380428 - MIR SINE MIR -25 237 15 202 268 85 0 chr15 66316224 66316306 -19379448 + L2 LINE L2 3139 3227 -86 2339 77 0 26 chr15 66319006 66319316 -19376438 + AluY SINE Alu 1 302 -9 490 311 65 77 chr15 66320067 66320315 -19375439 + MIR SINE MIR 16 260 -2 2116 125 0 24 chr15 66321027 66321324 -19374430 + AluSg SINE Alu 1 290 -20 2351 88 12 0 chr15 66321448 66321776 -19373978 + L1PA5 LINE L1 5823 6154 0 206 152 0 22 chr15 66322830 66322876 -19372878 + CT-rich Low_complexity Low_complexity 3 47 0 216 382 132 5 chr15 66322913 66323125 -19372629 + MIR SINE MIR 4 242 -20 * 574 299 99 83 chr15 66323105 66323660 -19372094 + L2 LINE L2 2020 2583 -731 333 326 165 5 chr15 66323750 66323968 -19371786 - L2 LINE L2 -2066 1248 996 17825 33 5 1 chr15 66323972 66326896 -19368858 + L1PA4 LINE L1 3229 6153 -2 1315 295 92 42 chr15 66327011 66327183 -19368571 - L2 LINE L2 -2302 1012 850 2448 66 0 3 chr15 66327183 66327487 -19368267 + AluY SINE Alu 1 303 -8 1315 295 92 42 chr15 66327487 66327852 -19367902 - L2 LINE L2 -2464 850 437 2243 178 54 2 chr15 66327852 66328257 -19367497 + MSTB LTR MaLR 1 426 0 1315 295 92 42 chr15 66328257 66328338 -19367416 - L2 LINE L2 -2876 438 362 262 360 11 22 chr15 66330173 66330262 -19365492 + MIR SINE MIR 30 117 -91 351 340 84 75 chr15 66331761 66332096 -19363658 - L2 LINE L2 -9 3263 2926 23 0 0 0 chr15 66332195 66332218 -19363536 + AT_rich Low_complexity Low_complexity 1 23 0 943 246 66 4 chr15 66332513 66332741 -19363013 - MIR SINE MIR 0 262 21 242 320 93 10 chr15 66333145 66333242 -19362512 - L2 LINE L2 0 3272 3168 22 35 0 0 chr15 66333937 66333966 -19361788 + AT_rich Low_complexity Low_complexity 1 29 0 196 281 94 78 chr15 66334092 66334220 -19361534 - MIR SINE MIR -54 208 79 349 148 25 12 chr15 66334780 66334861 -19360893 + (CATAA)n Simple_repeat Simple_repeat 2 83 0 812 319 49 62 chr15 66334880 66335394 -19360360 + L2 LINE L2 2807 3313 0 430 235 69 20 chr15 66335427 66335636 -19360118 - LTR40b LTR ERVL 0 462 203 416 123 14 0 chr15 66335668 66335741 -19360013 + GA-rich Low_complexity Low_complexity 1 74 0 360 308 49 110 chr15 66336567 66336698 -19359056 - L2 LINE L2 -12 3260 3122 881 206 13 57 chr15 66336698 66336926 -19358828 + MER20 DNA MER1_type 1 218 -1 360 308 49 110 chr15 66336926 66337102 -19358652 - L2 LINE L2 -150 3122 2972 879 261 149 3 chr15 66337301 66337649 -19358105 + MLT1J2 LTR MaLR 49 447 -3 222 343 137 7 chr15 66337662 66337808 -19357946 - MIR SINE MIR -45 217 53 358 289 99 70 chr15 66338517 66338759 -19356995 + MLT1K LTR MaLR 16 264 -324 1229 313 53 20 chr15 66338765 66339363 -19356391 - L2 LINE L2 -913 2401 1784 1671 25 0 0 chr15 66339820 66340024 -19355730 - L1PA4 LINE L1 -60 6095 5892 914 251 36 20 chr15 66342920 66343167 -19352587 + MIR SINE MIR 12 262 0 209 224 40 32 chr15 66343167 66343292 -19352462 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 322 354 34 1 chr15 66344317 66344466 -19351288 + MIR SINE MIR 38 189 -63 799 101 34 34 chr15 66344982 66345161 -19350593 + CT-rich Low_complexity Low_complexity 2 180 0 227 309 48 12 chr15 66345510 66345594 -19350160 - MIR SINE MIR -140 122 36 196 365 97 14 chr15 66347335 66347480 -19348274 - L2 LINE L2 -181 3091 2935 183 229 125 0 chr15 66348487 66348535 -19347219 - MIR SINE MIR -125 83 30 182 250 0 23 chr15 66348899 66348943 -19346811 + MER5A DNA MER1_type 70 112 -77 2125 165 0 35 chr15 66350461 66350807 -19344947 + MER1B DNA MER1_type 3 336 -1 327 241 46 86 chr15 66351194 66351368 -19344386 + MIR SINE MIR 90 256 -6 260 333 54 27 chr15 66353276 66353423 -19342331 - MIR SINE MIR -66 196 46 1755 136 0 18 chr15 66353447 66353720 -19342034 + AluSq SINE Alu 34 301 -12 342 45 0 0 chr15 66353972 66354016 -19341738 + (CA)n Simple_repeat Simple_repeat 1 44 0 1302 211 62 73 chr15 66354049 66354418 -19341336 + MLT1C LTR MaLR 4 368 -99 472 98 11 109 chr15 66354515 66354607 -19341147 + MLT1C LTR MaLR 373 455 -12 * 1898 133 6 60 chr15 66354606 66354937 -19340817 + MER1B DNA MER1_type 27 339 0 712 292 51 8 chr15 66355089 66355325 -19340429 + MIR SINE MIR 3 248 -14 230 176 118 0 chr15 66355396 66355447 -19340307 - Charlie5 DNA MER1_type -1376 1236 1180 260 159 0 32 chr15 66355556 66355619 -19340135 + (TAG)n Simple_repeat Simple_repeat 3 63 0 662 288 55 13 chr15 66355867 66356103 -19339651 + MIR SINE MIR 3 248 -14 219 254 18 0 chr15 66356447 66356502 -19339252 - MIR SINE MIR -14 248 193 8629 83 12 3 chr15 66356504 66358463 -19337291 + L1PA7 LINE L1 4233 6152 -2 195 365 0 0 chr15 66358809 66358913 -19336841 - MIR SINE MIR 0 262 159 2668 139 58 23 chr15 66359719 66360152 -19335602 - LTR47A LTR ERVL 0 452 5 302 343 58 86 chr15 66360412 66360899 -19334855 + ERVL LTR ERVL 559 1031 -3965 3299 232 34 44 chr15 66360923 66361901 -19333853 + L1MC/D LINE L1 3856 4915 -1231 2013 151 3 0 chr15 66361901 66362212 -19333542 + AluSx SINE Alu 1 312 0 3299 232 34 44 chr15 66362212 66362502 -19333252 + L1MC/D LINE L1 4915 5206 -940 251 172 17 17 chr15 66362603 66362661 -19333093 + L1MC/D LINE L1 5368 5425 -934 455 168 0 20 chr15 66362662 66362763 -19332991 + GA-rich Low_complexity Low_complexity 4 102 0 445 133 67 142 chr15 66362778 66362898 -19332856 + L1MC/D LINE L1 5440 5550 -692 553 60 12 12 chr15 66362898 66362981 -19332773 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 926 195 32 5 chr15 66362981 66363166 -19332588 - L1MD2 LINE L1 -34 6325 6136 615 248 15 96 chr15 66363518 66363716 -19332038 - MER5A DNA MER1_type 0 189 8 419 304 47 71 chr15 66363725 66364021 -19331733 + ERVL LTR ERVL 1254 1467 -3529 577 309 64 48 chr15 66364367 66364804 -19330950 + ERVL LTR ERVL 4898 5341 -423 405 266 137 7 chr15 66365593 66365732 -19330022 - MIR SINE MIR -98 164 8 386 296 85 42 chr15 66366910 66367170 -19328584 + L2 LINE L2 2617 2887 -427 412 326 42 67 chr15 66367222 66367535 -19328219 + L2 LINE L2 3009 3313 0 1160 232 5 5 chr15 66367819 66368043 -19327711 + MER58A DNA MER1_type 1 224 0 1786 147 22 29 chr15 66369096 66369409 -19326345 + AluJo SINE Alu 1 311 -1 813 212 46 65 chr15 66369949 66370166 -19325588 - MER20 DNA MER1_type 0 219 7 234 200 18 18 chr15 66370623 66370678 -19325076 - L1MCa LINE L1 -4788 1638 1584 2003 99 26 4 chr15 66370878 66371175 -19324579 - AluSx SINE Alu 0 306 4 25 31 0 0 chr15 66371901 66371933 -19323821 + AT_rich Low_complexity Low_complexity 1 32 0 2250 113 0 3 chr15 66372002 66372304 -19323450 + AluSp SINE Alu 1 301 -12 399 295 14 43 chr15 66372304 66372443 -19323311 + MIR SINE MIR 34 168 -94 22 35 0 0 chr15 66373776 66373805 -19321949 + AT_rich Low_complexity Low_complexity 1 29 0 3421 231 71 28 chr15 66374161 66376251 -19319503 - L1MB7 LINE L1 -13 6982 4221 1222 183 17 8 chr15 66376262 66376497 -19319257 + LTR51 LTR ERV1 435 671 0 609 252 193 61 chr15 66376517 66376958 -19318796 - L1MB7 LINE L1 -4555 2552 1906 1887 119 0 0 chr15 66376958 66377226 -19318528 - AluSx SINE Alu 0 312 45 445 288 39 39 chr15 66377327 66377556 -19318198 - L1MB7 LINE L1 -5424 1435 1207 271 291 88 83 chr15 66377617 66377968 -19317786 - L1MB7 LINE L1 -5667 1188 836 307 303 81 25 chr15 66378141 66378339 -19317415 - L1MB7 LINE L1 -6577 282 74 266 305 124 9 chr15 66378522 66378627 -19317127 - L3 LINE CR1 -404 1173 1057 464 299 174 14 chr15 66378897 66379104 -19316650 - MIR SINE MIR 0 262 23 225 94 0 0 chr15 66379544 66379576 -19316178 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 329 326 51 0 chr15 66380686 66380824 -19314930 + MIR SINE MIR 99 243 -19 187 295 16 33 chr15 66380972 66381033 -19314721 - MIR SINE MIR -106 156 97 22 0 0 0 chr15 66381967 66381989 -19313765 + AT_rich Low_complexity Low_complexity 1 22 0 2016 135 39 65 chr15 66382097 66382482 -19313272 - THE1C LTR MaLR 0 375 1 843 214 60 0 chr15 66382873 66383041 -19312713 + MER5B DNA MER1_type 1 178 0 637 177 82 25 chr15 66383048 66383206 -19312548 + MER5B DNA MER1_type 6 172 -6 480 324 35 12 chr15 66383472 66383645 -19312109 - MIR SINE MIR -78 184 8 552 253 55 0 chr15 66383665 66383811 -19311943 - L1MB7 LINE L1 -13 6171 6018 396 287 11 23 chr15 66383823 66383961 -19311793 + MIR SINE MIR 20 153 -83 229 194 45 15 chr15 66385335 66385402 -19310352 + LTR39 LTR ERV1 131 199 -584 357 317 139 0 chr15 66386623 66386783 -19308971 - MIR SINE MIR -2 260 79 313 372 17 12 chr15 66386813 66386985 -19308769 - MIR SINE MIR -35 227 55 584 338 77 34 chr15 66387017 66387867 -19307887 + L2 LINE L2 2378 3272 0 306 0 0 0 chr15 66388507 66388541 -19307213 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 273 53 89 chr15 66388585 66388867 -19306887 - L2 LINE L2 0 3313 3042 321 343 89 6 chr15 66388909 66389078 -19306676 - MIR SINE MIR -34 228 46 354 273 97 26 chr15 66389860 66390014 -19305740 + MIR SINE MIR 25 189 -73 467 282 36 41 chr15 66390144 66390339 -19305415 + MIR SINE MIR 55 248 -14 210 164 0 0 chr15 66390449 66390504 -19305250 + (TA)n Simple_repeat Simple_repeat 1 55 0 243 0 0 0 chr15 66390757 66390784 -19304970 + (TG)n Simple_repeat Simple_repeat 1 27 0 250 268 47 63 chr15 66391232 66391359 -19304395 - L2 LINE L2 -1 3312 3188 321 279 49 64 chr15 66391376 66391580 -19304174 - MIR SINE MIR -10 252 52 * 508 304 70 5 chr15 66391542 66391756 -19303998 + MIR SINE MIR 35 262 0 186 235 0 0 chr15 66391982 66392016 -19303738 - L2 LINE L2 -46 3267 3234 * 476 302 60 34 chr15 66392012 66392247 -19303507 + MIR SINE MIR 18 258 -4 2100 123 3 3 chr15 66392481 66392783 -19302971 + AluSx SINE Alu 1 302 -10 302 341 85 0 chr15 66393862 66394026 -19301728 + MIR SINE MIR 79 256 -6 416 345 73 13 chr15 66394400 66394632 -19301122 - MIR SINE MIR -10 252 7 352 266 43 97 chr15 66394961 66395168 -19300586 + L2 LINE L2 3115 3310 -3 308 271 19 28 chr15 66395256 66395363 -19300391 - MIR SINE MIR -73 189 84 390 318 184 10 chr15 66395818 66396019 -19299735 + MIR SINE MIR 26 261 -1 253 279 0 58 chr15 66396346 66396432 -19299322 - L2 LINE L2 -6 3307 3227 1759 118 114 0 chr15 66396440 66396695 -19299059 + AluSx SINE Alu 1 284 -28 185 200 20 40 chr15 66398577 66398627 -19297127 - L3 LINE CR1 -619 958 910 200 122 24 0 chr15 66399535 66399576 -19296178 + (TAA)n Simple_repeat Simple_repeat 1 42 0 395 286 0 9 chr15 66400124 66400229 -19295525 - MIR SINE MIR -107 155 52 380 62 0 0 chr15 66400323 66400371 -19295383 + (A)n Simple_repeat Simple_repeat 1 48 0 2141 118 0 13 chr15 66402340 66402646 -19293108 + AluSg SINE Alu 1 302 -8 1516 206 83 12 chr15 66403332 66403671 -19292083 + MLT1A1 LTR MaLR 1 363 -2 333 311 83 33 chr15 66403774 66403954 -19291800 + MIR SINE MIR 1 189 -73 252 0 0 0 chr15 66404250 66404278 -19291476 + (CA)n Simple_repeat Simple_repeat 2 29 0 903 213 28 28 chr15 66406461 66406677 -19289077 - MER58A DNA MER1_type -2 222 7 449 266 40 8 chr15 66406693 66406817 -19288937 + MIR SINE MIR 109 236 -26 968 211 56 14 chr15 66408087 66408300 -19287454 - MER58A DNA MER1_type -2 222 1 260 259 0 35 chr15 66408397 66408482 -19287272 + CT-rich Low_complexity Low_complexity 3 84 0 409 249 6 6 chr15 66410500 66410673 -19285081 + (TG)n Simple_repeat Simple_repeat 2 174 0 1436 137 0 5 chr15 66411506 66411718 -19284036 - AluSg/x SINE Alu -15 297 87 1023 110 71 11 chr15 66411719 66411901 -19283853 - MSTA LTR MaLR -234 194 2 354 315 54 40 chr15 66412324 66412546 -19283208 + MIR SINE MIR 38 262 0 2326 188 29 104 chr15 66413770 66414365 -19281389 - Tigger7 DNA MER2_type 0 2487 1 1839 163 3 0 chr15 66414399 66414693 -19281061 + AluSx SINE Alu 1 295 -17 21 82 0 0 chr15 66414907 66414956 -19280798 + AT_rich Low_complexity Low_complexity 1 49 0 298 152 13 13 chr15 66417094 66417173 -19278581 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 219 69 0 0 chr15 66417685 66417714 -19278040 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 6470 139 24 11 chr15 66419244 66421156 -19274598 - L1PA11 LINE L1 -2 6172 4250 267 290 126 44 chr15 66422373 66422556 -19273198 + MIR SINE MIR 65 262 0 207 276 138 0 chr15 66423769 66423856 -19271898 - MIR SINE MIR -115 147 49 268 239 7 35 chr15 66424915 66425057 -19270697 + CT-rich Low_complexity Low_complexity 2 139 0 23 0 0 0 chr15 66425266 66425289 -19270465 + AT_rich Low_complexity Low_complexity 1 23 0 339 208 83 0 chr15 66425526 66425622 -19270132 - L1MC3 LINE L1 -1 7784 7681 263 309 26 16 chr15 66426013 66426204 -19269550 - L1MEd LINE L1 -5237 882 690 422 288 82 65 chr15 66426504 66427078 -19268676 - HAL1b LINE L1 -435 913 330 325 287 33 102 chr15 66427258 66427533 -19268221 - L1MEd LINE L1 -4886 1233 978 1857 175 3 10 chr15 66427626 66427940 -19267814 - AluJb SINE Alu 0 312 1 24 32 0 0 chr15 66427943 66427974 -19267780 + AT_rich Low_complexity Low_complexity 1 31 0 1221 194 0 12 chr15 66428115 66428373 -19267381 - L1P LINE L1 -1038 5108 4854 5612 115 26 3 chr15 66428394 66429416 -19266338 + L1PA14 LINE L1 5118 6158 -3 27 62 0 0 chr15 66429444 66429492 -19266262 + AT_rich Low_complexity Low_complexity 1 48 0 1986 164 38 29 chr15 66429652 66430200 -19265554 + MLT2A2 LTR ERVL 1 554 0 225 279 23 0 chr15 66430622 66430708 -19265046 - L1ME LINE L1 -482 5639 5552 332 287 83 25 chr15 66431115 66431272 -19264482 - L1ME LINE L1 -1034 5112 4947 25 75 0 0 chr15 66431553 66431606 -19264148 + AT_rich Low_complexity Low_complexity 1 53 0 1459 250 25 7 chr15 66431809 66432245 -19263509 - L1MD2 LINE L1 -528 6225 5782 * 3989 273 109 57 chr15 66432241 66434330 -19261424 - L1MD2 LINE L1 -4325 2215 18 341 169 38 62 chr15 66434425 66434585 -19261169 + (TTATA)n Simple_repeat Simple_repeat 5 160 0 33 0 0 0 chr15 66434653 66434686 -19261068 + AT_rich Low_complexity Low_complexity 1 33 0 291 279 10 29 chr15 66436853 66436957 -19258797 + CT-rich Low_complexity Low_complexity 1 102 0 498 331 28 0 chr15 66437943 66438124 -19257630 + MIR SINE MIR 51 236 -26 1380 121 5 34 chr15 66438197 66438429 -19257325 + AluSg/x SINE Alu 84 309 0 1079 298 76 29 chr15 66438715 66439201 -19256553 - MLT1J LTR MaLR 0 511 3 426 339 75 71 chr15 66439826 66440389 -19255365 - L2 LINE L2 0 3272 2705 251 309 29 127 chr15 66441650 66441925 -19253829 + L2 LINE L2 3008 3255 -17 348 24 0 0 chr15 66443082 66443123 -19252631 + (CA)n Simple_repeat Simple_repeat 1 41 0 1731 145 0 35 chr15 66443476 66443765 -19251989 + AluJb SINE Alu 1 279 -33 315 330 128 26 chr15 66444222 66444401 -19251353 - MIR SINE MIR -57 205 10 430 324 70 16 chr15 66444473 66444658 -19251096 - MIR SINE MIR -47 215 21 375 306 50 8 chr15 66445551 66445672 -19250082 + L2 LINE L2 3186 3311 -2 23 0 0 0 chr15 66446218 66446241 -19249513 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr15 66446308 66446338 -19249416 + (TG)n Simple_repeat Simple_repeat 1 30 0 386 342 66 0 chr15 66446484 66446636 -19249118 + MIR3 SINE MIR 36 197 -11 378 296 14 21 chr15 66448092 66448234 -19247520 - MIR SINE MIR -74 188 48 422 141 13 0 chr15 66448377 66448455 -19247299 + AluJ/FRAM SINE Alu 227 305 -7 360 0 0 0 chr15 66449468 66449508 -19246246 + (CA)n Simple_repeat Simple_repeat 2 41 0 1456 236 75 28 chr15 66449875 66450431 -19245323 - MLT1E2 LTR MaLR -6 620 55 401 288 106 49 chr15 66450473 66450699 -19245055 - MIR SINE MIR 0 262 24 4281 160 35 12 chr15 66450784 66451547 -19244207 - LTR39 LTR ERV1 0 783 3 2118 118 3 3 chr15 66452196 66452485 -19243269 - AluSx SINE Alu -23 289 1 354 362 0 0 chr15 66453677 66453793 -19241961 - MIR SINE MIR -108 154 39 279 349 0 0 chr15 66454006 66454092 -19241662 + (CA)n Simple_repeat Simple_repeat 1 86 0 187 132 53 26 chr15 66454649 66454687 -19241067 + MER5B DNA MER1_type 3 41 -137 829 116 9 0 chr15 66454691 66454803 -19240951 + AluY SINE Alu 4 116 -195 662 258 26 0 chr15 66454904 66455055 -19240699 - MER5A DNA MER1_type -34 155 1 2284 99 0 0 chr15 66455337 66455684 -19240070 - AluY SINE Alu 0 363 17 249 284 0 32 chr15 66455754 66455849 -19239905 + CT-rich Low_complexity Low_complexity 3 94 0 2016 129 3 3 chr15 66456529 66456857 -19238897 + AluSg SINE Alu 1 310 0 1831 164 10 3 chr15 66456977 66457275 -19238479 + AluJo SINE Alu 1 300 -12 246 242 15 15 chr15 66457601 66457667 -19238087 + (TATG)n Simple_repeat Simple_repeat 1 66 0 21 57 0 0 chr15 66458517 66458552 -19237202 + AT_rich Low_complexity Low_complexity 1 35 0 528 125 154 22 chr15 66458552 66458688 -19237066 - L1MB4 LINE L1 0 6180 6027 258 95 0 24 chr15 66458711 66458753 -19237001 - AluSc SINE Alu -19 280 240 284 210 111 37 chr15 66459842 66459923 -19235831 + MIR SINE MIR 27 113 -95 4843 146 25 7 chr15 66460397 66461166 -19234588 + LTR39 LTR ERV1 1 783 0 450 0 0 0 chr15 66461239 66461289 -19234465 + (CTG)n Simple_repeat Simple_repeat 1 50 0 386 342 86 0 chr15 66461676 66461828 -19233926 - MIR3 SINE MIR -1 207 43 961 201 53 112 chr15 66462808 66463202 -19232552 + LTR8A LTR ERV1 1 371 -356 409 182 0 127 chr15 66463218 66463328 -19232426 + LTR8A LTR ERV1 632 727 0 392 296 92 7 chr15 66463544 66463696 -19232058 + MIR3 SINE MIR 34 198 -10 252 164 127 0 chr15 66464356 66464411 -19231343 + MIR SINE MIR 192 253 -9 309 51 0 0 chr15 66465902 66465941 -19229813 + (TG)n Simple_repeat Simple_repeat 1 39 0 6197 104 8 0 chr15 66466201 66467489 -19228265 + L1PA14 LINE L1 4868 6161 0 2059 160 41 31 chr15 66468766 66469310 -19226444 + MLT2A2 LTR ERVL 1 554 0 22 0 0 0 chr15 66469549 66469571 -19226183 + AT_rich Low_complexity Low_complexity 1 22 0 1197 167 67 94 chr15 66469573 66469872 -19225882 - AluJb SINE Alu -9 293 3 453 257 103 0 chr15 66469944 66470080 -19225674 + MIR SINE MIR 102 251 -11 211 333 152 30 chr15 66470101 66470212 -19225542 - L2 LINE L2 0 3313 3182 2047 176 49 53 chr15 66470212 66470724 -19225030 + LTR54 LTR ERV1 1 510 0 211 333 152 30 chr15 66470724 66470744 -19225010 - L2 LINE L2 -131 3182 3166 763 230 185 88 chr15 66470979 66471680 -19224074 - LTR41 LTR ERVL -4 769 1 1397 218 79 62 chr15 66473139 66473557 -19222197 - LTR9 LTR ERV1 -187 425 1 270 164 16 16 chr15 66473562 66473623 -19222131 - MLT1J2 LTR MaLR -323 127 67 267 286 97 58 chr15 66473683 66473766 -19221988 - L2 LINE L2 -218 3054 2976 2042 85 14 32 chr15 66473766 66474071 -19221683 + AluSp SINE Alu 5 304 0 267 286 97 58 chr15 66474071 66474139 -19221615 - L2 LINE L2 -296 2976 2895 414 313 0 0 chr15 66474507 66474638 -19221116 + MER94 DNA DNA 1 131 -3 1046 156 12 0 chr15 66474773 66474940 -19220814 + FRAM SINE Alu 2 170 -6 1746 173 0 16 chr15 66475058 66475364 -19220390 + AluJb SINE Alu 1 301 -11 213 200 0 0 chr15 66475411 66475446 -19220308 + (TG)n Simple_repeat Simple_repeat 2 36 0 322 349 51 6 chr15 66475608 66475784 -19219970 - MIR SINE MIR -50 212 30 2244 101 16 0 chr15 66476238 66476546 -19219208 + AluSp SINE Alu 1 313 0 22 35 0 0 chr15 66477218 66477247 -19218507 + AT_rich Low_complexity Low_complexity 1 29 0 280 335 132 7 chr15 66477349 66477501 -19218253 + MIR SINE MIR 36 206 -56 447 299 85 0 chr15 66477980 66478157 -19217597 + L1ME3A LINE L1 895 1086 -5033 225 253 0 91 chr15 66478429 66478528 -19217226 + MLT1I LTR MaLR 304 393 -16 588 286 54 0 chr15 66478528 66478696 -19217058 + MER58A DNA MER1_type 1 177 -47 21 57 0 0 chr15 66478817 66478852 -19216902 + AT_rich Low_complexity Low_complexity 1 35 0 353 241 43 0 chr15 66479192 66479308 -19216446 + L1ME3A LINE L1 2293 2413 -3716 301 315 14 0 chr15 66479385 66479458 -19216296 + L1ME3A LINE L1 2447 2520 -3609 669 271 91 30 chr15 66479481 66480144 -19215610 + L1ME3A LINE L1 2628 3330 -2799 207 220 0 0 chr15 66480191 66480241 -19215513 + (TA)n Simple_repeat Simple_repeat 2 51 0 452 257 34 16 chr15 66480243 66480598 -19215156 + L1ME3A LINE L1 5114 5446 -707 521 284 40 14 chr15 66480601 66480749 -19215005 + MER96 DNA MER1_type? 1 152 -23 257 295 49 8 chr15 66480748 66480870 -19214884 + MER96 DNA MER1_type? 48 174 -1 * 914 279 94 16 chr15 66480897 66481385 -19214369 + L1ME3A LINE L1 5520 6045 -108 758 240 31 64 chr15 66481454 66481623 -19214131 - L1MCa LINE L1 -3645 2570 2397 2157 109 17 0 chr15 66481623 66481916 -19213838 + AluSq SINE Alu 1 298 -15 758 240 31 64 chr15 66481916 66482145 -19213609 - L1MCa LINE L1 -3818 2397 2189 4161 213 52 3 chr15 66482158 66483073 -19212681 - L1P LINE L1 -797 5359 4372 1734 163 31 0 chr15 66483073 66483361 -19212393 - AluJb SINE Alu -13 299 3 4161 213 52 3 chr15 66483361 66483614 -19212140 - L1P LINE L1 -1784 4372 4133 3905 157 10 27 chr15 66483616 66484493 -19211261 + L1PA16 LINE L1 5352 6164 -2 802 226 32 51 chr15 66484493 66484807 -19210947 - L1MCa LINE L1 -4214 2182 1875 28 79 0 0 chr15 66484852 66484915 -19210839 + AT_rich Low_complexity Low_complexity 1 63 0 562 328 54 24 chr15 66484935 66485307 -19210447 + L1ME2 LINE L1 2901 3283 -2863 537 333 127 17 chr15 66485511 66485822 -19209932 + L1ME2 LINE L1 5439 5805 -359 1782 172 91 66 chr15 66485822 66485866 -19209888 - MLT2C2 LTR ERVL 0 464 423 784 63 25 25 chr15 66485866 66486024 -19209730 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 1782 172 91 66 chr15 66486024 66486432 -19209322 - MLT2C2 LTR ERVL -41 423 1 537 333 127 17 chr15 66486432 66486523 -19209231 + L1ME2 LINE L1 5805 5885 -279 28 48 0 0 chr15 66486844 66486886 -19208868 + AT_rich Low_complexity Low_complexity 1 42 0 812 295 46 65 chr15 66486973 66487584 -19208170 + L1MC/D LINE L1 4102 4700 -1446 1683 181 6 22 chr15 66487593 66487908 -19207846 + AluJo SINE Alu 1 310 -2 483 174 196 43 chr15 66487924 66488062 -19207692 - MER20 DNA MER1_type -58 161 3 314 307 132 32 chr15 66488062 66488313 -19207441 + L1MC/D LINE L1 4747 5022 -1124 225 332 55 18 chr15 66488355 66488629 -19207125 + L1MC/D LINE L1 5633 5916 -1892 23 33 0 0 chr15 66488944 66488974 -19206780 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 66489697 66489727 -19206027 + AT_rich Low_complexity Low_complexity 1 30 0 3357 164 89 20 chr15 66490137 66490926 -19204828 + L1MA9 LINE L1 5470 6312 0 2399 172 26 7 chr15 66491084 66491537 -19204217 - LTR32 LTR ERVL 0 471 10 479 250 158 13 chr15 66492403 66492555 -19203199 + MER5A DNA MER1_type 10 183 -6 216 0 0 0 chr15 66493682 66493706 -19202048 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 273 29 0 0 chr15 66493705 66493739 -19202015 + (TG)n Simple_repeat Simple_repeat 1 34 0 262 315 134 16 chr15 66493764 66493891 -19201863 - MIR SINE MIR -108 154 13 446 181 0 0 chr15 66493897 66493980 -19201774 - MER20 DNA MER1_type 0 219 137 * 906 184 11 38 chr15 66493976 66494161 -19201593 - MER20 DNA MER1_type -39 180 1 6825 59 18 13 chr15 66494312 66495283 -19200471 - L1PA7 LINE L1 0 6154 5176 2346 60 3 3 chr15 66495383 66495682 -19200072 + L1PA7 LINE L1 5840 6138 -16 7739 39 1 0 chr15 66496007 66497719 -19198035 - L1PA4 LINE L1 0 6155 4443 238 255 99 87 chr15 66497873 66498034 -19197720 + MIR SINE MIR 28 190 -72 1562 224 40 6 chr15 66498379 66498732 -19197022 - MLT1A1 LTR MaLR 0 365 1 1303 166 51 4 chr15 66498733 66498968 -19196786 - MLT1A1-int LTR MaLR -1 1734 1489 238 335 0 43 chr15 66499190 66499375 -19196379 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 405 330 66 25 chr15 66500043 66500240 -19195514 - MIR SINE MIR -12 250 46 332 267 27 0 chr15 66500484 66500559 -19195195 - MER2 DNA MER2_type 0 345 269 1171 176 10 0 chr15 66500591 66500795 -19194959 - MER2 DNA MER2_type -138 207 2 2137 134 21 37 chr15 66501420 66501801 -19193953 + THE1C LTR MaLR 1 375 0 280 241 65 19 chr15 66501814 66501922 -19193832 - MER117 DNA MER1_type -84 113 1 440 314 94 29 chr15 66502644 66502889 -19192865 + MIR SINE MIR 2 262 0 237 154 74 0 chr15 66503567 66503729 -19192025 + (TA)n Simple_repeat Simple_repeat 2 175 0 369 161 84 0 chr15 66503744 66504060 -19191694 + (TATAA)n Simple_repeat Simple_repeat 1 342 0 338 163 69 0 chr15 66504045 66504336 -19191418 + (TA)n Simple_repeat Simple_repeat 1 311 0 * 2498 111 0 16 chr15 66504860 66505230 -19190524 - THE1B LTR MaLR 0 364 1 492 321 33 54 chr15 66505263 66505503 -19190251 + L2 LINE L2 2834 3068 -204 203 262 19 9 chr15 66505842 66505949 -19189805 + (TTTA)n Simple_repeat Simple_repeat 4 111 0 387 283 109 37 chr15 66505950 66506325 -19189429 - L1ME4a LINE L1 -160 5961 5560 22 0 0 0 chr15 66507030 66507052 -19188702 + AT_rich Low_complexity Low_complexity 1 22 0 349 240 94 41 chr15 66507265 66507436 -19188318 - L1 LINE L1 -1713 4433 4254 2305 55 0 73 chr15 66509179 66509508 -19186246 - AluY SINE Alu -6 305 1 24 53 0 0 chr15 66510462 66510500 -19185254 + AT_rich Low_complexity Low_complexity 1 38 0 437 337 72 40 chr15 66510529 66510591 -19185163 - L1MC/D LINE L1 -2055 5753 5694 1967 133 0 0 chr15 66510591 66510869 -19184885 - AluSx SINE Alu -11 301 24 437 337 72 40 chr15 66510869 66511278 -19184476 - L1MC/D LINE L1 -2114 5694 5267 22 56 0 0 chr15 66511666 66511702 -19184052 + AT_rich Low_complexity Low_complexity 1 36 0 255 254 75 0 chr15 66512158 66512225 -19183529 + Tigger2 DNA MER2_type 1 72 -2646 * 2417 150 69 5 chr15 66512212 66512631 -19183123 + Tigger2 DNA MER2_type 2273 2718 0 190 0 67 0 chr15 66512764 66512794 -19182960 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 231 331 20 0 chr15 66512802 66512950 -19182804 - L1PA8A LINE L1 -684 5447 5297 343 218 120 49 chr15 66513237 66513256 -19182498 - L1MA10 LINE L1 -2 6332 6314 2040 213 99 63 chr15 66513256 66514058 -19181696 - L1ME2 LINE L1 -9 6155 5296 2158 122 0 3 chr15 66514058 66514369 -19181385 - AluSg SINE Alu 0 310 1 2040 213 99 63 chr15 66514369 66514492 -19181262 - L1ME2 LINE L1 -868 5296 5179 2857 229 110 62 chr15 66514498 66515628 -19180126 - L1ME1 LINE L1 -32 6134 5059 2270 96 3 0 chr15 66515628 66515929 -19179825 - AluSq SINE Alu -11 302 1 2857 229 110 62 chr15 66515929 66516508 -19179246 - L1ME1 LINE L1 -1107 5059 4509 3181 68 7 24 chr15 66516508 66516964 -19178790 - LTR7 LTR ERV1 -2 448 1 2857 229 110 62 chr15 66516964 66517406 -19178348 - L1ME1 LINE L1 -1657 4509 3872 320 357 41 19 chr15 66517528 66517847 -19177907 - L1ME3A LINE L1 -224 5946 5621 313 274 24 40 chr15 66517929 66518053 -19177701 - L1ME3A LINE L1 -567 5603 5482 444 324 67 83 chr15 66518269 66518702 -19177052 - L1ME3A LINE L1 -1642 4504 4083 1770 174 7 10 chr15 66518702 66519006 -19176748 - AluJo SINE Alu -9 303 1 444 324 67 83 chr15 66519006 66519226 -19176528 - L1ME3A LINE L1 -2063 4083 3861 576 309 103 39 chr15 66519373 66519918 -19175836 - L2 LINE L2 -140 3173 2585 2075 137 3 0 chr15 66519937 66520236 -19175518 + AluSx SINE Alu 1 300 -12 568 212 99 57 chr15 66520282 66520494 -19175260 - MIR SINE MIR -11 251 31 261 0 0 0 chr15 66521145 66521174 -19174580 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2370 165 24 5 chr15 66521655 66522067 -19173687 - MSTB LTR MaLR -2 424 5 288 300 50 12 chr15 66522703 66522863 -19172891 - MER20B DNA MER1_type 0 783 618 211 302 38 0 chr15 66523014 66523067 -19172687 - L2 LINE L2 -5 3267 3213 512 226 64 55 chr15 66523160 66523395 -19172359 + L1ME3A LINE L1 5925 6161 -9 195 248 89 30 chr15 66524709 66524810 -19170944 - MIR SINE MIR -35 227 121 1792 170 7 0 chr15 66524810 66525099 -19170655 + AluJb SINE Alu 1 291 -21 208 269 19 0 chr15 66525116 66525168 -19170586 - MIR SINE MIR -130 132 80 1029 249 65 21 chr15 66525868 66526206 -19169548 - L1ME3A LINE L1 -5 6165 5813 628 175 0 0 chr15 66526206 66526309 -19169445 + AluJb SINE Alu 183 285 -27 414 0 0 0 chr15 66527595 66527641 -19168113 + (CA)n Simple_repeat Simple_repeat 2 47 0 1454 308 72 18 chr15 66527785 66528337 -19167417 + MLT1E LTR MaLR 1 582 -11 42 17 0 17 chr15 66528546 66528574 -19167180 + AT_rich Low_complexity Low_complexity 1 28 -31 2515 61 25 0 chr15 66528574 66528900 -19166854 - L1PA5 LINE L1 -7 6147 5814 42 17 0 17 chr15 66528900 66528931 -19166823 + AT_rich Low_complexity Low_complexity 28 59 0 11242 22 0 0 chr15 66528931 66531013 -19164741 - L1PA2 LINE L1 -7 6148 4073 37518 64 57 2 chr15 66531013 66536521 -19159233 - L1PA5 LINE L1 -327 5828 11 187 202 214 24 chr15 66537437 66537521 -19158233 + MIR SINE MIR 41 140 -68 2971 173 13 37 chr15 66537739 66537890 -19157864 + MLT2B3 LTR ERVL 1 154 -400 2015 122 75 20 chr15 66537890 66538235 -19157519 + THE1B LTR MaLR 1 364 0 11466 101 10 3 chr15 66538235 66539803 -19155951 + THE1B-int LTR MaLR 1 1580 0 2094 129 60 14 chr15 66539803 66540151 -19155603 + THE1B LTR MaLR 1 364 0 2971 173 13 37 chr15 66540151 66540540 -19155214 + MLT2B3 LTR ERVL 151 530 -24 246 164 30 90 chr15 66540565 66540632 -19155122 + MLT2D LTR ERVL 357 414 0 731 305 84 36 chr15 66540677 66541093 -19154661 + MLT1J2 LTR MaLR 1 436 -14 324 0 0 0 chr15 66541897 66541933 -19153821 + (CA)n Simple_repeat Simple_repeat 2 37 0 276 350 103 0 chr15 66543554 66543748 -19152006 + MIR SINE MIR 2 215 -47 2335 231 45 6 chr15 66544558 66545070 -19150684 + MLT2B3 LTR ERVL 3 534 -20 236 29 0 29 chr15 66545070 66545104 -19150650 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 236 129 49 0 chr15 66545106 66545152 -19150602 + MLT2B3 LTR ERVL 461 547 -7 201 277 339 18 chr15 66545234 66545346 -19150408 - L2 LINE L2 -3 3269 3122 419 303 11 27 chr15 66545614 66545799 -19149955 + MLT1L LTR MaLR 430 611 -4 182 254 53 132 chr15 66545856 66545970 -19149784 + MER5A DNA MER1_type 55 159 -30 * 318 275 33 11 chr15 66545906 66545997 -19149757 - MER5B DNA MER1_type -85 93 1 421 298 8 16 chr15 66546046 66546167 -19149587 - L2 LINE L2 -204 3068 2949 200 217 33 33 chr15 66546174 66546234 -19149520 + MIR SINE MIR 96 155 -107 11138 206 24 24 chr15 66546248 66551413 -19144341 + L1PA12 LINE L1 7 6801 -783 708 218 34 6 chr15 66551436 66551615 -19144139 + L1P5 LINE L1 6 189 -6674 14656 191 29 16 chr15 66551620 66556340 -19139414 + L1P5 LINE L1 1393 6356 -511 2980 134 0 2 chr15 66556440 66556916 -19138838 - L1P LINE L1 -2415 3731 3257 2810 139 43 0 chr15 66556906 66557566 -19138188 + L1P4 LINE L1 4851 5532 -636 * 1685 195 24 11 chr15 66558660 66559029 -19136725 + L1 LINE L1 4814 5187 -959 1595 177 31 64 chr15 66559132 66559459 -19136295 + L1M1 LINE L1 1736 2051 -5514 1187 131 0 0 chr15 66559460 66559628 -19136126 + AluSg/x SINE Alu 137 304 -8 4527 106 16 1 chr15 66559628 66560337 -19135417 + L1M1 LINE L1 2095 2813 -4752 297 300 37 2 chr15 66560452 66560592 -19135162 - MIR SINE MIR -66 142 49 297 301 37 2 chr15 66560751 66560887 -19134867 - MIR SINE MIR -66 142 49 249 200 0 0 chr15 66561899 66561939 -19133815 + Alu SINE Alu 140 179 -124 480 238 90 16 chr15 66562509 66562631 -19133123 + MIR SINE MIR 20 150 -112 575 262 0 20 chr15 66562632 66562781 -19132973 + FRAM SINE Alu 1 146 -30 240 35 0 0 chr15 66562784 66562813 -19132941 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 190 313 153 47 chr15 66562860 66563010 -19132744 + L2 LINE L2 3148 3313 0 4240 252 31 13 chr15 66563435 66564499 -19131255 + L1PA13 LINE L1 1148 2230 -4557 4126 173 7 1 chr15 66564602 66565752 -19130002 + L1PA15 LINE L1 4775 5931 -234 366 311 42 0 chr15 66565904 66566023 -19129731 - MIR SINE MIR -111 151 28 287 341 11 0 chr15 66566331 66566422 -19129332 + L2 LINE L2 2542 2633 -681 233 284 42 32 chr15 66566446 66566541 -19129213 + L2 LINE L2 2435 2530 -784 230 298 105 61 chr15 66566549 66566888 -19128866 + L2 LINE L2 2696 3066 -247 563 107 48 0 chr15 66566921 66567005 -19128749 - MER72 LTR ERV1 0 722 635 360 306 47 47 chr15 66567292 66567524 -19128230 + MIR SINE MIR 5 236 -26 380 300 91 27 chr15 66567579 66567689 -19128065 + MER5A DNA MER1_type 45 161 -28 903 59 0 0 chr15 66568292 66568411 -19127343 - L1PA5 LINE L1 0 6154 6036 2275 271 24 7 chr15 66568511 66569058 -19126696 - L1M2 LINE L1 -5224 1625 1070 277 377 26 0 chr15 66569210 66569324 -19126430 - L1M2 LINE L1 -6062 787 671 238 366 30 0 chr15 66569738 66569839 -19125915 - L1M2 LINE L1 -6082 767 664 21 36 0 0 chr15 66570015 66570043 -19125711 + AT_rich Low_complexity Low_complexity 1 28 0 252 263 105 44 chr15 66570048 66570162 -19125592 + MIR SINE MIR 129 249 -13 26 0 0 0 chr15 66570856 66570882 -19124872 + AT_rich Low_complexity Low_complexity 1 26 0 537 217 64 13 chr15 66571058 66571215 -19124539 - MLT1J2 LTR MaLR -283 167 3 4101 215 31 30 chr15 66572045 66573160 -19122594 - L1P LINE L1 -2182 3964 2849 9033 169 55 2 chr15 66573272 66575509 -19120245 - L1P4 LINE L1 -416 5745 3380 1068 215 48 72 chr15 66575616 66576035 -19119719 - L1M4 LINE L1 -1043 5103 4695 6063 150 28 23 chr15 66576050 66577638 -19118116 - L1MA3 LINE L1 -7 6298 4691 1142 276 64 27 chr15 66578145 66578518 -19117236 + LTR16C LTR ERVL 103 489 -2 256 255 144 20 chr15 66579424 66579577 -19116177 - MIR SINE MIR -71 191 20 588 197 148 0 chr15 66579582 66579704 -19116050 - Tigger2 DNA MER2_type -11 2707 2568 814 290 83 94 chr15 66580011 66580647 -19115107 - L2 LINE L2 -64 3249 2638 1173 197 76 10 chr15 66581377 66581681 -19114073 + MER33 DNA MER1_type 1 324 0 520 379 0 17 chr15 66582452 66582629 -19113125 - MER91A DNA MER1_type -22 174 1 282 262 0 10 chr15 66582977 66583080 -19112674 - L1MA10 LINE L1 0 6334 6233 1142 310 22 31 chr15 66583104 66583549 -19112205 - L1MEc LINE L1 -5919 477 37 836 283 20 40 chr15 66583550 66583854 -19111900 - MLT1J2 LTR MaLR -152 298 1 333 111 0 0 chr15 66584374 66584428 -19111326 + L1MA10 LINE L1 6268 6321 -13 25 0 0 0 chr15 66584433 66584458 -19111296 + AT_rich Low_complexity Low_complexity 1 25 0 2569 112 3 0 chr15 66584703 66585086 -19110668 + L1PB1 LINE L1 5768 6151 0 2081 96 54 0 chr15 66585090 66585403 -19110351 + L1PA11 LINE L1 5357 5686 -488 203 141 56 0 chr15 66585410 66585459 -19110295 + (TA)n Simple_repeat Simple_repeat 1 57 -18 3593 104 4 0 chr15 66585459 66585970 -19109784 + L1PA11 LINE L1 5660 6172 -2 203 141 56 0 chr15 66585970 66585991 -19109763 + (TA)n Simple_repeat Simple_repeat 57 75 0 186 354 71 20 chr15 66586177 66586276 -19109478 + L2 LINE L2 3186 3289 -24 359 306 83 0 chr15 66586446 66586567 -19109187 - L2 LINE L2 0 3313 3183 320 329 70 0 chr15 66587471 66587614 -19108140 - MIR SINE MIR -57 205 53 216 182 0 0 chr15 66587719 66587763 -19107991 + (CA)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr15 66589240 66589260 -19106494 + (T)n Simple_repeat Simple_repeat 1 20 0 224 253 0 35 chr15 66589309 66589396 -19106358 + T-rich Low_complexity Low_complexity 2 85 0 554 263 29 34 chr15 66589868 66589912 -19105842 - LTR16A1 LTR ERVL -13 444 401 527 114 13 0 chr15 66589912 66589991 -19105763 + MADE1 DNA Mariner 1 80 0 554 263 29 34 chr15 66589991 66590121 -19105633 - LTR16A1 LTR ERVL -56 401 271 1263 94 0 0 chr15 66590221 66590401 -19105353 + (CATA)n Simple_repeat Simple_repeat 1 180 0 227 236 22 22 chr15 66590418 66590507 -19105247 - L1MC4 LINE L1 -1339 6703 6615 185 159 23 0 chr15 66590508 66590552 -19105202 + (TA)n Simple_repeat Simple_repeat 1 45 0 234 273 45 0 chr15 66590553 66590641 -19105113 - L1MC4 LINE L1 -1337 6705 6614 266 227 13 0 chr15 66590644 66590719 -19105035 + (TA)n Simple_repeat Simple_repeat 1 76 0 338 242 11 22 chr15 66590729 66590820 -19104934 - L1MC4 LINE L1 -1339 6703 6614 1144 302 79 40 chr15 66591253 66591962 -19103792 + L1M4 LINE L1 1 737 -5805 23 33 0 0 chr15 66592270 66592300 -19103454 + AT_rich Low_complexity Low_complexity 1 30 0 2097 203 123 29 chr15 66592339 66593092 -19102662 + L1M4 LINE L1 819 1642 -4900 726 262 39 9 chr15 66593090 66593426 -19102328 + L1M4 LINE L1 1927 2373 -4273 * 267 103 0 0 chr15 66593544 66593583 -19102171 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 3021 307 66 29 chr15 66593584 66594004 -19101750 + L1MEc LINE L1 130 533 -5863 1654 149 51 38 chr15 66594004 66594374 -19101380 + THE1C LTR MaLR 1 375 0 3021 307 66 29 chr15 66594374 66596103 -19099651 + L1MEc LINE L1 533 2358 -4038 243 217 341 8 chr15 66596102 66596231 -19099523 + L1M4 LINE L1 5263 5434 -1210 * 593 302 24 19 chr15 66596234 66596439 -19099315 + MLT1H1 LTR MaLR 349 554 -1 241 270 0 47 chr15 66596441 66596552 -19099202 + MLT1H1-int LTR MaLR 2 81 -1290 2179 180 51 10 chr15 66596580 66596991 -19098763 + MSTC LTR MaLR 1 428 0 2165 148 0 12 chr15 66597079 66597417 -19098337 + MER1B DNA MER1_type 1 334 -3 7462 101 1 13 chr15 66597442 66598540 -19097214 + HERVH LTR ERV1 1911 2995 -4718 5802 107 2 2 chr15 66598519 66599373 -19096381 + HERVH LTR ERV1 3140 3993 -3720 * 2763 120 42 3 chr15 66599375 66599965 -19095789 + HERVH LTR ERV1 4488 5149 -2564 1383 122 0 0 chr15 66600006 66600211 -19095543 + HERVH LTR ERV1 5615 5819 -1894 2197 115 53 13 chr15 66600211 66600586 -19095168 + HERVH LTR ERV1 7324 7713 0 2596 77 50 25 chr15 66600586 66600988 -19094766 + LTR7 LTR ERV1 1 412 -38 405 0 0 0 chr15 66601707 66601752 -19094002 + (CA)n Simple_repeat Simple_repeat 2 46 0 230 189 19 19 chr15 66602270 66602323 -19093431 + MER96 DNA MER1_type? 1 53 -122 248 209 0 0 chr15 66602358 66602401 -19093353 + MER96 DNA MER1_type? 132 174 -1 * 709 230 86 55 chr15 66602401 66602825 -19092929 + MLT1H LTR MaLR 114 595 0 23 0 0 0 chr15 66603572 66603595 -19092159 + AT_rich Low_complexity Low_complexity 1 23 0 367 300 225 12 chr15 66604164 66604417 -19091337 + L2 LINE L2 3006 3312 -1 1407 130 109 0 chr15 66604589 66604827 -19090927 - Tigger1 DNA MER2_type 0 2418 2155 * 1982 157 17 22 chr15 66604822 66605179 -19090575 - Tigger1 DNA MER2_type -2059 359 5 263 332 49 130 chr15 66605323 66605693 -19090061 - L2 LINE L2 0 3272 2933 522 288 14 7 chr15 66606314 66606460 -19089294 + L2 LINE L2 2924 3070 -243 213 317 10 67 chr15 66606734 66606838 -19088916 + MIR3 SINE MIR 6 103 -105 416 325 167 21 chr15 66608728 66609106 -19086648 + L1M4 LINE L1 3503 3935 -2211 24 53 0 0 chr15 66609344 66609382 -19086372 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr15 66609460 66609488 -19086266 + AT_rich Low_complexity Low_complexity 1 28 0 300 53 0 0 chr15 66609593 66609631 -19086123 + (CA)n Simple_repeat Simple_repeat 1 38 0 2117 80 0 29 chr15 66609759 66610035 -19085719 + AluY SINE Alu 24 291 -20 7725 197 33 2 chr15 66610096 66611837 -19083917 + L1PA15 LINE L1 3714 5522 -643 316 0 45 0 chr15 66611837 66611881 -19083873 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7725 197 33 2 chr15 66611881 66612544 -19083210 + L1PA15 LINE L1 5522 6163 -2 25 0 0 0 chr15 66612642 66612667 -19083087 + AT_rich Low_complexity Low_complexity 1 25 0 281 330 26 21 chr15 66612678 66612869 -19082885 + HAL1 LINE L1 1556 1747 -760 216 67 0 0 chr15 66613104 66613134 -19082620 + (CCA)n Simple_repeat Simple_repeat 3 32 0 27 0 0 0 chr15 66613275 66613302 -19082452 + AT_rich Low_complexity Low_complexity 1 27 0 1030 300 36 13 chr15 66613594 66614146 -19081608 - L1 LINE L1 -2298 3848 3268 2331 76 0 3 chr15 66614165 66614453 -19081301 - AluY SINE Alu -24 287 1 2266 113 11 17 chr15 66614495 66614850 -19080904 - THE1A LTR MaLR 0 355 3 1782 115 21 4 chr15 66614852 66615131 -19080623 - THE1A-int LTR MaLR 0 1580 1297 318 269 35 41 chr15 66615287 66615432 -19080322 - MER114 LTR ERV 0 648 505 295 298 23 0 chr15 66615541 66615672 -19080082 - MER114 LTR ERV -467 181 48 253 243 125 14 chr15 66615699 66615843 -19079911 + L1ME3A LINE L1 5152 5311 -835 431 333 27 4 chr15 66615874 66616099 -19079655 + L1ME3A LINE L1 5303 5532 -632 949 297 38 32 chr15 66616104 66616193 -19079561 + L1ME3A LINE L1 5601 5688 -482 750 175 0 29 chr15 66616193 66616330 -19079424 + FLAM_A SINE Alu 1 133 0 949 297 38 32 chr15 66616330 66616711 -19079043 + L1ME3A LINE L1 5688 6074 -96 710 233 84 24 chr15 66616782 66617078 -19078676 - MER114 LTR ERV -128 520 207 433 363 106 9 chr15 66617520 66617964 -19077790 + L1ME3A LINE L1 4567 5053 -1093 668 277 89 29 chr15 66618148 66618548 -19077206 + L1ME3A LINE L1 5278 5702 -468 188 250 0 0 chr15 66619573 66619613 -19076141 - L2 LINE L2 -94 3219 3180 1759 120 0 60 chr15 66620951 66621234 -19074520 + AluSq SINE Alu 21 286 -27 502 258 81 42 chr15 66621701 66621961 -19073793 + L1ME3A LINE L1 5882 6151 -19 273 281 49 6 chr15 66622837 66623001 -19072753 + L1 LINE L1 2148 2318 -3828 1784 118 57 30 chr15 66623807 66624104 -19071650 + AluSg SINE Alu 1 305 -5 640 294 103 25 chr15 66624455 66624775 -19070979 - LTR16A LTR ERVL 0 450 106 1058 308 70 47 chr15 66624810 66624962 -19070792 + MLT2F LTR ERVL 19 166 -497 1832 118 37 78 chr15 66624962 66625283 -19070471 + AluSx SINE Alu 3 310 -2 1058 308 70 47 chr15 66625283 66625747 -19070007 + MLT2F LTR ERVL 166 649 -14 327 331 67 32 chr15 66625863 66626238 -19069516 - L1MC/D LINE L1 -2166 5642 5255 304 296 79 16 chr15 66626667 66626971 -19068783 + L1 LINE L1 4104 4426 -1720 686 276 44 0 chr15 66627248 66627429 -19068325 - MER5A DNA MER1_type 0 189 1 713 206 142 111 chr15 66628263 66628293 -19067461 - MLT1A2 LTR MaLR -14 360 332 2272 106 3 0 chr15 66628293 66628595 -19067159 + AluSx SINE Alu 3 305 -7 713 206 142 111 chr15 66628595 66628762 -19066992 - MLT1A2 LTR MaLR -42 332 172 204 40 0 0 chr15 66628762 66628787 -19066967 + (TC)n Simple_repeat Simple_repeat 2 26 0 713 206 142 111 chr15 66628787 66628932 -19066822 - MLT1A2 LTR MaLR -202 172 6 315 0 0 0 chr15 66629819 66629854 -19065900 + (CA)n Simple_repeat Simple_repeat 2 36 0 457 298 22 33 chr15 66630046 66630251 -19065503 - MIR SINE MIR -19 243 38 212 367 100 0 chr15 66630267 66630387 -19065367 - L2 LINE L2 0 3313 3182 228 337 143 0 chr15 66630473 66630571 -19065183 - L2 LINE L2 -194 3078 2967 266 326 97 43 chr15 66630821 66631079 -19064675 - L2 LINE L2 -1149 2165 1894 2000 176 11 0 chr15 66631108 66631467 -19064287 - L1PB4 LINE L1 -11 6145 5783 931 233 12 16 chr15 66631481 66631726 -19064028 - L1MC/D LINE L1 -1409 4737 4494 2291 229 103 43 chr15 66631840 66632701 -19063053 - L1MC/D LINE L1 -1610 4536 3624 2778 90 43 50 chr15 66633555 66633999 -19061755 - L1PA11 LINE L1 -2 6172 5732 583 229 0 0 chr15 66634123 66634232 -19061522 - Tigger3(Golem) DNA MER2_type -2 3027 2919 350 275 0 0 chr15 66634321 66634401 -19061353 - Tigger3(Golem) DNA MER2_type -2949 80 1 26 30 0 0 chr15 66635044 66635077 -19060677 + AT_rich Low_complexity Low_complexity 1 33 0 329 354 15 0 chr15 66635641 66635771 -19059983 + MIR SINE MIR 44 175 -87 21 36 0 0 chr15 66636759 66636787 -19058967 + AT_rich Low_complexity Low_complexity 1 28 0 255 276 92 0 chr15 66637053 66637151 -19058603 - MIR SINE MIR -37 225 119 650 253 133 81 chr15 66637171 66637584 -19058170 - MLT1G LTR MaLR -13 577 128 2042 141 0 3 chr15 66637584 66637882 -19057872 + AluSx SINE Alu 1 297 -15 650 253 133 81 chr15 66637882 66638009 -19057745 - MLT1G LTR MaLR -462 128 9 206 353 167 0 chr15 66639421 66639523 -19056231 - L2 LINE L2 0 3272 3154 477 258 164 6 chr15 66639806 66639965 -19055789 + MER5A DNA MER1_type 6 189 0 317 139 0 0 chr15 66640794 66640848 -19054906 - MLT2B1 LTR ERVL -1 553 390 737 83 30 0 chr15 66640877 66641009 -19054745 + (TCTA)n Simple_repeat Simple_repeat 2 137 0 1553 215 33 0 chr15 66641035 66641337 -19054417 - MLT2B1 LTR ERVL -208 312 1 714 257 147 65 chr15 66642567 66642995 -19052759 - L2 LINE L2 0 3313 2851 1865 181 9 12 chr15 66643776 66644119 -19051635 + MLT1B LTR MaLR 1 342 -48 22 35 0 0 chr15 66644719 66644748 -19051006 + AT_rich Low_complexity Low_complexity 1 29 0 505 349 113 17 chr15 66644807 66645266 -19050488 - L1ME4a LINE L1 -197 5924 5422 314 337 144 0 chr15 66645366 66645553 -19050201 - MIR SINE MIR -16 246 33 264 308 15 0 chr15 66645635 66645752 -19050002 - MER5B DNA MER1_type -28 161 29 307 303 63 42 chr15 66645785 66645927 -19049827 - MER5A DNA MER1_type 0 189 45 * 348 302 8 32 chr15 66645803 66645929 -19049825 + MER5A DNA MER1_type 34 156 -33 846 71 0 24 chr15 66645932 66646058 -19049696 - L1PA8 LINE L1 -1 6171 6049 213 342 86 17 chr15 66647069 66647186 -19048568 - MIR SINE MIR -106 156 32 509 258 20 26 chr15 66647765 66647916 -19047838 + MIR SINE MIR 42 191 -71 306 106 0 0 chr15 66648340 66648387 -19047367 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr15 66648703 66648729 -19047025 + (TG)n Simple_repeat Simple_repeat 2 27 0 228 279 77 58 chr15 66649312 66649416 -19046338 + MLT1K LTR MaLR 91 196 -392 303 248 109 20 chr15 66649759 66649860 -19045894 - MIR SINE MIR -8 254 145 871 183 30 146 chr15 66650009 66650337 -19045417 + MLT1A1 LTR MaLR 1 290 -75 1737 203 3 0 chr15 66650376 66650677 -19045077 - AluJb SINE Alu -10 302 1 552 235 67 88 chr15 66651847 66652234 -19043520 - L1ME4a LINE L1 -40 6081 5703 296 127 13 139 chr15 66652234 66652313 -19043441 - MLT1H LTR MaLR -1 548 480 260 303 156 0 chr15 66652512 66652621 -19043133 - MLT1H LTR MaLR -394 155 30 1532 128 10 71 chr15 66652901 66653100 -19042654 - L1PA16 LINE L1 -9 6157 5980 2064 136 7 0 chr15 66653100 66653401 -19042353 - AluSx SINE Alu -9 303 1 1532 128 10 71 chr15 66653401 66653497 -19042257 - L1PA16 LINE L1 -186 5980 5880 4529 189 39 7 chr15 66653498 66654446 -19041308 - L1PA16 LINE L1 -211 5955 4935 2102 131 0 3 chr15 66654446 66654743 -19041011 - AluSg SINE Alu -14 296 1 4529 189 39 7 chr15 66654743 66655237 -19040517 - L1PA16 LINE L1 -1231 4935 4459 339 326 30 23 chr15 66655241 66655373 -19040381 - MER5B DNA MER1_type -45 133 1 227 242 0 15 chr15 66655425 66655491 -19040263 + (CCCA)n Simple_repeat Simple_repeat 3 67 0 2097 116 10 0 chr15 66756450 66756744 -18939010 + AluSx SINE Alu 1 297 -15 24 54 0 18 chr15 66756784 66756821 -18938933 + AT_rich Low_complexity Low_complexity 1 38 -17 1498 171 32 32 chr15 66756821 66757102 -18938652 - AluJo SINE Alu -31 281 1 24 54 0 18 chr15 66757102 66757120 -18938634 + AT_rich Low_complexity Low_complexity 38 55 0 29 60 0 0 chr15 66757811 66757861 -18937893 + AT_rich Low_complexity Low_complexity 1 50 0 257 271 72 48 chr15 66758196 66758362 -18937392 + L1ME LINE L1 5607 5776 -345 23 0 0 0 chr15 66758397 66758420 -18937334 + AT_rich Low_complexity Low_complexity 1 23 0 1175 28 0 0 chr15 66758743 66758884 -18936870 - L1PA4 LINE L1 -3 6152 6012 22 0 0 0 chr15 66758985 66759007 -18936747 + AT_rich Low_complexity Low_complexity 1 22 0 506 206 69 74 chr15 66759134 66759323 -18936431 - L1MC4 LINE L1 -239 7803 7616 345 260 40 0 chr15 66759326 66759426 -18936328 - L1MC4a LINE L1 -351 7457 7354 33 43 0 0 chr15 66759437 66759484 -18936270 + AT_rich Low_complexity Low_complexity 1 47 0 1363 214 156 56 chr15 66760871 66761370 -18934384 - MLT1H LTR MaLR 0 549 1 185 343 58 7 chr15 66761558 66761695 -18934059 - L2 LINE L2 -632 2682 2539 2097 116 10 0 chr15 66763372 66763666 -18932088 + AluSx SINE Alu 1 297 -15 24 54 0 18 chr15 66763706 66763743 -18932011 + AT_rich Low_complexity Low_complexity 1 38 -17 1498 171 32 32 chr15 66763743 66764024 -18931730 - AluJo SINE Alu -31 281 1 24 54 0 18 chr15 66764024 66764042 -18931712 + AT_rich Low_complexity Low_complexity 38 55 0 29 60 0 0 chr15 66764733 66764783 -18930971 + AT_rich Low_complexity Low_complexity 1 50 0 257 271 72 48 chr15 66765118 66765284 -18930470 + L1ME LINE L1 5607 5776 -345 23 0 0 0 chr15 66765319 66765342 -18930412 + AT_rich Low_complexity Low_complexity 1 23 0 1189 243 107 48 chr15 66765507 66765926 -18929828 - MLT1H LTR MaLR -105 444 1 196 175 32 16 chr15 66767258 66767321 -18928433 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 195 69 0 0 chr15 66767321 66767350 -18928404 + (CATA)n Simple_repeat Simple_repeat 2 30 0 538 303 45 11 chr15 66767784 66767962 -18927792 + MIR SINE MIR 48 231 -31 1593 259 204 2 chr15 66768158 66768653 -18927101 - MLT1G1 LTR MaLR 0 595 1 225 121 0 0 chr15 66768726 66768759 -18926995 - MLT1G1 LTR MaLR -562 33 1 333 145 12 24 chr15 66768989 66769072 -18926682 + GA-rich Low_complexity Low_complexity 3 84 0 259 307 31 16 chr15 66769143 66769270 -18926484 - L1ME LINE L1 -286 5835 5705 390 281 66 0 chr15 66769564 66769685 -18926069 - MIR SINE MIR -28 234 106 412 285 72 84 chr15 66769998 66770401 -18925353 + L2 LINE L2 2045 2442 -872 256 307 117 22 chr15 66770597 66770734 -18925020 - MIR SINE MIR -1 261 112 482 207 9 118 chr15 66771227 66771497 -18924257 + L1MC4a LINE L1 6098 7807 -1 303 234 44 157 chr15 66771849 66771951 -18923803 + L2 LINE L2 2168 2280 -1034 2025 143 7 0 chr15 66771951 66772245 -18923509 - AluSx SINE Alu -16 296 1 303 234 44 157 chr15 66772245 66772505 -18923249 + L2 LINE L2 2280 2489 -825 198 278 113 21 chr15 66772701 66772798 -18922956 + L2 LINE L2 3163 3268 -4 212 195 0 0 chr15 66772862 66772903 -18922851 + L2 LINE L2 3272 3312 -1 30 0 0 0 chr15 66773866 66773896 -18921858 + AT_rich Low_complexity Low_complexity 1 30 0 323 328 33 33 chr15 66774820 66774976 -18920778 - MIR SINE MIR -52 156 2 215 356 111 62 chr15 66775042 66775331 -18920423 - L2 LINE L2 -42 3230 2928 1209 280 86 12 chr15 66775436 66776372 -18919382 + L1ME2 LINE L1 4866 5869 -295 439 221 35 62 chr15 66776396 66776541 -18919213 + L1ME2 LINE L1 5967 6107 -57 243 324 63 18 chr15 66776892 66777003 -18918751 + MIR SINE MIR 23 138 -70 298 264 28 2 chr15 66778148 66778262 -18917492 - MIR SINE MIR -63 145 38 692 207 43 143 chr15 66779103 66779403 -18916351 + MER21B LTR ERV1 1 270 -593 42002 41 22 2 chr15 66779418 66785445 -18910309 - L1PA3 LINE L1 0 6155 2 1812 253 75 13 chr15 66785451 66785981 -18909773 + MER21B LTR ERV1 257 819 -44 25 31 0 0 chr15 66785985 66786017 -18909737 + AT_rich Low_complexity Low_complexity 1 32 0 5739 250 97 62 chr15 66786316 66788203 -18907551 + L1MC1 LINE L1 68 1888 -4538 2207 115 3 0 chr15 66788203 66788498 -18907256 + AluSp SINE Alu 1 296 -17 5739 250 97 62 chr15 66788498 66791167 -18904587 + L1MC1 LINE L1 1888 4786 -1640 644 221 32 0 chr15 66791156 66791314 -18904440 + L1MC1 LINE L1 6048 6210 -1855 * 3074 205 69 45 chr15 66791327 66791857 -18903897 + L1MC3 LINE L1 6827 7391 -394 188 65 0 32 chr15 66791857 66791888 -18903866 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3074 205 69 45 chr15 66791888 66792293 -18903461 + L1MC3 LINE L1 7391 7785 0 225 207 0 17 chr15 66792715 66792773 -18902981 + T-rich Low_complexity Low_complexity 4 60 0 2195 100 3 0 chr15 66793172 66793471 -18902283 - AluSg SINE Alu -10 300 1 362 257 194 29 chr15 66793632 66793807 -18901947 + MIR SINE MIR 58 261 -1 191 260 20 0 chr15 66793993 66794043 -18901711 - L2 LINE L2 -2 3270 3220 1059 235 53 15 chr15 66794045 66794385 -18901369 + L1ME LINE L1 4044 4396 -1750 225 262 180 70 chr15 66794670 66794926 -18900828 - L2 LINE L2 -991 2323 2040 580 322 5 5 chr15 66795522 66795721 -18900033 + MIR SINE MIR 64 262 0 330 263 12 0 chr15 66797506 66797586 -18898168 - MIR SINE MIR -108 154 74 746 308 48 41 chr15 66798304 66798787 -18896967 + L1ME LINE L1 5294 5782 -380 21 82 0 0 chr15 66798841 66798890 -18896864 + AT_rich Low_complexity Low_complexity 1 49 0 1328 194 8 0 chr15 66798891 66799128 -18896626 + L1MC1 LINE L1 6325 6563 -50 2089 177 53 2 chr15 66799135 66799588 -18896166 + L1 LINE L1 4118 4593 -1553 405 316 120 10 chr15 66800910 66801119 -18894635 + MIR SINE MIR 24 255 -7 238 308 0 0 chr15 66801293 66801345 -18894409 - MIR SINE MIR -96 112 61 305 266 7 79 chr15 66804246 66804385 -18891369 + MIR SINE MIR 130 258 -4 22 35 0 0 chr15 66804614 66804643 -18891111 + AT_rich Low_complexity Low_complexity 1 29 0 757 227 153 50 chr15 66805103 66805424 -18890330 - MER93b LTR ERV1 0 373 20 2125 136 0 7 chr15 66805431 66805741 -18890013 - AluSx SINE Alu -4 308 1 285 29 0 0 chr15 66806012 66806046 -18889708 + (TG)n Simple_repeat Simple_repeat 1 34 0 1968 147 0 7 chr15 66806097 66806396 -18889358 + AluSx SINE Alu 1 297 -15 669 310 83 28 chr15 66808556 66808979 -18886775 + L2 LINE L2 1547 1992 -1322 2894 288 204 62 chr15 66810515 66810788 -18884966 + L2 LINE L2 17 250 -3064 627 71 0 12 chr15 66810788 66810873 -18884881 - AluJ/FLAM SINE Alu -228 84 1 2894 288 204 62 chr15 66810873 66811437 -18884317 + L2 LINE L2 250 733 -2581 2064 138 0 3 chr15 66811437 66811728 -18884026 - AluSx SINE Alu -22 290 1 2894 288 204 62 chr15 66811728 66812986 -18882768 + L2 LINE L2 733 2505 -809 765 258 70 0 chr15 66813213 66813399 -18882355 - MIR SINE MIR -57 205 7 348 24 0 0 chr15 66813434 66813468 -18882286 + (TG)n Simple_repeat Simple_repeat 1 34 -352 2342 99 0 0 chr15 66813468 66813761 -18881993 + AluSq SINE Alu 1 293 -20 348 24 0 0 chr15 66813761 66813779 -18881975 + (TG)n Simple_repeat Simple_repeat 33 386 0 348 24 0 0 chr15 66813779 66813820 -18881934 + (TG)n Simple_repeat Simple_repeat 2 42 0 552 253 11 45 chr15 66813895 66814073 -18881681 - L2 LINE L2 0 3313 3142 373 196 61 0 chr15 66814073 66814221 -18881533 + (TA)n Simple_repeat Simple_repeat 1 157 0 394 291 55 16 chr15 66814227 66814409 -18881345 + L2 LINE L2 3125 3313 0 411 340 22 11 chr15 66814772 66814957 -18880797 + MIR SINE MIR 63 249 -13 419 298 69 15 chr15 66814988 66815119 -18880635 - MIR SINE MIR -90 172 35 748 250 29 25 chr15 66815211 66815415 -18880339 - MIR SINE MIR -26 236 32 1354 194 73 58 chr15 66816012 66816393 -18879361 - MLT1B LTR MaLR -3 387 1 326 293 66 61 chr15 66816603 66816815 -18878939 - MIR SINE MIR -3 259 47 393 155 47 31 chr15 66816815 66816944 -18878810 + GA-rich Low_complexity Low_complexity 2 132 0 286 291 159 0 chr15 66818638 66818789 -18876965 - MIR SINE MIR -6 256 82 432 364 56 9 chr15 66819108 66819339 -18876415 + MIR SINE MIR 3 244 -18 392 207 114 41 chr15 66819571 66819765 -18875989 + L1MB8 LINE L1 4824 5052 -1094 1992 300 72 35 chr15 66819778 66820631 -18875123 + L1PA16 LINE L1 1 884 -5903 4605 239 47 9 chr15 66820638 66822876 -18872878 + L1PA16 LINE L1 1323 3653 -3144 8391 170 27 11 chr15 66822891 66825647 -18870107 - L1PB2 LINE L1 0 6151 3349 9766 209 28 9 chr15 66825694 66828827 -18866927 + L1PA16 LINE L1 3646 6815 -2 1053 227 38 14 chr15 66828829 66829254 -18866500 + L1MB8 LINE L1 5045 5480 -704 40425 51 3 6 chr15 66829260 66835427 -18860327 + L1PA4 LINE L1 1 6151 -4 2713 194 40 11 chr15 66835416 66836046 -18859708 + L1MB8 LINE L1 5470 6117 -61 * 2414 52 28 0 chr15 66836545 66836833 -18858921 - AluY SINE Alu -15 296 1 386 354 11 29 chr15 66837535 66837710 -18858044 - MIR3 SINE MIR -3 205 34 2371 162 36 9 chr15 66838759 66839179 -18856575 - MSTB1 LTR MaLR -1 431 1 905 266 0 22 chr15 66839197 66839426 -18856328 + MER58A DNA MER1_type 1 224 0 290 342 0 0 chr15 66840439 66840515 -18855239 - L2 LINE L2 0 3272 3197 312 70 0 0 chr15 66840518 66840561 -18855193 + (CA)n Simple_repeat Simple_repeat 2 44 0 1846 266 98 33 chr15 66840615 66841457 -18854297 + L1ME3A LINE L1 5231 6126 -44 422 314 118 46 chr15 66841719 66842133 -18853621 - L2 LINE L2 -470 2844 2401 814 281 114 9 chr15 66842344 66842685 -18853069 + MLT1J LTR MaLR 106 482 -29 186 351 0 0 chr15 66842758 66842815 -18852939 - L2 LINE L2 -8 3264 3208 349 271 173 8 chr15 66842979 66843112 -18852642 - MIR SINE MIR -94 168 14 200 304 36 45 chr15 66845303 66845415 -18850339 + MIR SINE MIR 91 201 -61 1819 148 106 23 chr15 66845572 66845611 -18850143 - MSTB1 LTR MaLR 0 432 398 2176 115 0 3 chr15 66845611 66845906 -18849848 + AluSg SINE Alu 1 294 -16 1819 148 106 23 chr15 66845906 66846252 -18849502 - MSTB1 LTR MaLR -34 398 15 1563 279 56 82 chr15 66846617 66848688 -18847066 + L1MCc LINE L1 333 2546 -4576 3344 37 0 0 chr15 66848688 66849094 -18846660 + L1PA4 LINE L1 5747 6152 -3 1563 279 56 82 chr15 66849094 66849404 -18846350 + L1MCc LINE L1 2546 2863 -4259 3212 213 60 48 chr15 66849412 66850470 -18845284 + Tigger6a DNA MER2_type 7 1076 -7 5925 252 62 47 chr15 66850524 66851611 -18844143 + L1MCc LINE L1 2906 3975 -3030 931 232 13 13 chr15 66851611 66851835 -18843919 + MER58A DNA MER1_type 1 224 0 5925 252 62 47 chr15 66851835 66854081 -18841673 + L1MCc LINE L1 3975 6260 -745 295 273 98 42 chr15 66854082 66854225 -18841529 - L2 LINE L2 -546 2768 2618 568 178 86 20 chr15 66854331 66854483 -18841271 + L1MA10 LINE L1 6166 6327 -7 272 291 36 36 chr15 66854496 66854606 -18841148 - L2 LINE L2 -851 2463 2354 241 35 0 0 chr15 66854647 66854676 -18841078 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2093 118 0 0 chr15 66854676 66854956 -18840798 - AluSx SINE Alu -30 282 3 431 114 0 29 chr15 66854676 66854736 -18841018 - AluS SINE Alu -8 304 223 1347 213 4 22 chr15 66856803 66857076 -18838678 - AluJo SINE Alu -43 269 2 277 396 59 0 chr15 66857128 66857315 -18838439 + L2 LINE L2 2890 3087 -226 309 337 63 11 chr15 66857337 66857527 -18838227 - LTR33A LTR ERVL -28 495 296 1202 252 63 28 chr15 66857635 66858032 -18837722 + MER74B LTR ERVL 160 570 -52 273 307 62 40 chr15 66858354 66858530 -18837224 + L2 LINE L2 3134 3313 0 275 239 0 15 chr15 66858661 66858728 -18837026 + GA-rich Low_complexity Low_complexity 4 69 0 208 222 0 0 chr15 66858803 66858857 -18836897 + C-rich Low_complexity Low_complexity 1 54 0 485 104 13 0 chr15 66859202 66859279 -18836475 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 397 279 73 22 chr15 66859858 66859994 -18835760 - L2 LINE L2 -938 2376 2234 9406 36 4 0 chr15 66860169 66861340 -18834414 + L1P LINE L1 2886 4061 -2085 333 264 22 11 chr15 66861440 66861531 -18834223 - L1MC4 LINE L1 -1339 6703 6612 190 79 26 26 chr15 66861531 66861569 -18834185 + (TA)n Simple_repeat Simple_repeat 1 38 0 1270 166 34 13 chr15 66861571 66861806 -18833948 - LTR39 LTR ERV1 -543 240 1 366 80 0 0 chr15 66862125 66862175 -18833579 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 548 287 104 83 chr15 66862234 66862909 -18832845 + L1M2 LINE L1 761 1449 -5400 11243 32 5 1 chr15 66863123 66865258 -18830496 - L1PA3 LINE L1 0 6155 4014 180 239 43 0 chr15 66865975 66866021 -18829733 + MIR SINE MIR 119 166 -96 876 89 0 0 chr15 66867426 66867549 -18828205 + (TA)n Simple_repeat Simple_repeat 1 123 0 6609 116 10 12 chr15 66867822 66868876 -18826878 - L1P LINE L1 -743 5403 4352 599 282 106 45 chr15 66868961 66869433 -18826321 - L1ME LINE L1 -367 5803 5303 270 309 99 35 chr15 66869621 66870546 -18825208 - L1ME LINE L1 -1102 5044 4060 762 177 0 0 chr15 66870911 66871035 -18824719 + AluJb SINE Alu 1 124 -188 229 162 29 0 chr15 66871646 66871714 -18824040 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 151 194 108 chr15 66872589 66872867 -18822887 - AluJo SINE Alu 0 302 1 1118 73 24 12 chr15 66872889 66873054 -18822700 - L1PA5 LINE L1 0 6154 5988 1499 134 16 8 chr15 66873360 66873607 -18822147 + L1PB4 LINE L1 5908 6156 0 253 123 18 0 chr15 66873737 66873794 -18821960 - MER4-int LTR ERV1 -5436 1162 1105 22 0 0 0 chr15 66873883 66873905 -18821849 + AT_rich Low_complexity Low_complexity 1 22 0 690 159 0 0 chr15 66874080 66874187 -18821567 - U6 snRNA snRNA 0 107 1 1306 254 53 34 chr15 66874188 66874695 -18821059 - L1MC/D LINE L1 -2030 5778 5262 27 73 0 0 chr15 66874752 66874807 -18820947 + AT_rich Low_complexity Low_complexity 1 55 0 182 128 51 34 chr15 66874807 66874924 -18820830 + (TA)n Simple_repeat Simple_repeat 1 119 0 306 0 0 0 chr15 66875071 66875105 -18820649 + (TA)n Simple_repeat Simple_repeat 2 35 0 2232 103 7 0 chr15 66875105 66875407 -18820347 - AluSc SINE Alu -3 306 3 3178 169 48 6 chr15 66875408 66875953 -18819801 + LTR39 LTR ERV1 216 783 0 183 290 188 102 chr15 66875992 66876168 -18819586 + L2 LINE L2 3042 3232 -40 203 298 0 0 chr15 66876198 66876245 -18819509 + polypurine Low_complexity Low_complexity 4 50 0 374 292 22 0 chr15 66876981 66877070 -18818684 - L3 LINE CR1 -1452 125 35 183 276 35 35 chr15 66877906 66877964 -18817790 + L2 LINE L2 2717 2774 -540 195 325 48 42 chr15 66878041 66878207 -18817547 + L2 LINE L2 2893 3059 -213 225 222 0 0 chr15 66878493 66878538 -18817216 + L2 LINE L2 3175 3219 -94 205 204 0 20 chr15 66878707 66878756 -18816998 + (CTAAT)n Simple_repeat Simple_repeat 1 48 0 242 236 97 0 chr15 66878864 66878936 -18816818 + L2 LINE L2 3197 3275 -38 38 61 0 0 chr15 66880460 66880526 -18815228 + AT_rich Low_complexity Low_complexity 1 66 0 189 288 14 48 chr15 66881452 66881556 -18814198 + MIR SINE MIR 60 161 -47 2431 186 49 40 chr15 66881885 66882435 -18813319 - MER34B LTR ERV1 0 565 11 338 203 55 76 chr15 66883647 66883790 -18811964 + MLT1J1 LTR MaLR 304 446 0 198 0 0 0 chr15 66885418 66885440 -18810314 + (CA)n Simple_repeat Simple_repeat 1 22 0 814 258 70 49 chr15 66885544 66885570 -18810184 - L2 LINE L2 -1 3312 3288 2864 166 31 9 chr15 66885570 66886117 -18809637 - MER89 LTR ERV1 0 559 1 814 258 70 49 chr15 66886117 66886377 -18809377 - L2 LINE L2 -25 3288 3020 417 217 66 19 chr15 66886559 66886665 -18809089 + MIR SINE MIR 78 188 -74 333 262 21 10 chr15 66887323 66887470 -18808284 - MER5A DNA MER1_type -1 188 1 293 129 0 32 chr15 66888548 66888610 -18807144 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 409 313 55 8 chr15 66888643 66888771 -18806983 + MIR SINE MIR 17 150 -58 2278 117 0 0 chr15 66888775 66889073 -18806681 + AluSx SINE Alu 1 298 -14 597 304 131 24 chr15 66889961 66890297 -18805457 + L3 LINE CR1 1178 1549 -28 249 258 48 0 chr15 66890971 66891033 -18804721 - AluJ/FLAM SINE Alu -237 65 1 264 241 80 75 chr15 66891048 66891235 -18804519 - L1ME LINE L1 -305 5816 5629 740 241 121 28 chr15 66891239 66891690 -18804064 + MLT1J LTR MaLR 6 511 0 494 289 33 39 chr15 66891706 66891929 -18803825 - L1ME LINE L1 -513 5608 5385 30 0 0 0 chr15 66892609 66892639 -18803115 + AT_rich Low_complexity Low_complexity 1 30 0 486 267 92 0 chr15 66893171 66893302 -18802452 - MIR SINE MIR -10 252 110 525 339 28 20 chr15 66893693 66893941 -18801813 - MIR SINE MIR -1 261 12 1984 144 125 13 chr15 66893941 66894324 -18801430 - MSTA LTR MaLR -2 426 1 549 285 162 9 chr15 66894546 66895002 -18800752 + L1M4 LINE L1 3359 3884 -2262 21 71 0 0 chr15 66895032 66895074 -18800680 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr15 66895514 66895550 -18800204 + AT_rich Low_complexity Low_complexity 1 36 0 2157 110 0 0 chr15 66895602 66895894 -18799860 - AluSx SINE Alu -8 304 13 239 149 21 0 chr15 66895894 66895932 -18799822 - Alu SINE Alu -260 42 1 375 360 42 36 chr15 66895932 66896268 -18799486 + L1M4 LINE L1 4507 4844 -1302 1740 117 4 16 chr15 66896334 66896581 -18799173 - AluSx SINE Alu -33 279 36 234 307 20 13 chr15 66896584 66896734 -18799020 + L1M4 LINE L1 4892 5042 -1104 1816 209 16 11 chr15 66896837 66897200 -18798554 - MLT1A1 LTR MaLR 0 365 1 2411 148 28 25 chr15 66897474 66897905 -18797849 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr15 66898019 66898041 -18797713 + AT_rich Low_complexity Low_complexity 1 22 0 340 332 120 19 chr15 66899034 66899242 -18796512 - MIR SINE MIR -22 240 12 643 14 0 0 chr15 66899873 66899994 -18795760 + L1PA4 LINE L1 6064 6184 0 363 272 51 44 chr15 66900683 66900841 -18794913 + MARNA DNA Mariner 409 567 -19 425 252 74 22 chr15 66902285 66902420 -18793334 + L1MB8 LINE L1 1231 1372 -5487 1497 228 46 12 chr15 66902472 66902951 -18792803 + L1MB8 LINE L1 1352 1846 -5009 423 262 16 8 chr15 66902956 66903078 -18792676 + L1MB8 LINE L1 2212 2334 -4625 4663 221 33 50 chr15 66903083 66903738 -18792016 + L1MB8 LINE L1 3648 4313 -2676 1687 196 3 16 chr15 66903738 66904054 -18791700 + AluJo SINE Alu 1 312 0 4663 221 33 50 chr15 66904054 66906819 -18788935 + L1MB8 LINE L1 4313 6975 -14 21 0 0 0 chr15 66906819 66906840 -18788914 + AT_rich Low_complexity Low_complexity 1 21 0 466 281 0 0 chr15 66907278 66907392 -18788362 - MIR3 SINE MIR -5 203 90 1330 101 0 0 chr15 66907489 66907677 -18788077 + L1PA5 LINE L1 5965 6152 -2 599 343 32 18 chr15 66908005 66908285 -18787469 - L3 LINE CR1 -172 1405 1122 180 0 0 0 chr15 66908819 66908839 -18786915 + (A)n Simple_repeat Simple_repeat 1 20 0 217 329 12 12 chr15 66908860 66908942 -18786812 + L2 LINE L2 3153 3234 -38 2401 69 13 10 chr15 66909358 66909663 -18786091 + AluY SINE Alu 2 307 -4 228 227 0 0 chr15 66910201 66910245 -18785509 + (CA)n Simple_repeat Simple_repeat 1 44 0 266 231 55 93 chr15 66910415 66910597 -18785157 - L2 LINE L2 -78 3235 3061 315 314 46 26 chr15 66911529 66911682 -18784072 + MER117 DNA MER1_type 1 156 -41 381 299 115 51 chr15 66911884 66912101 -18783653 + MIR SINE MIR 32 262 0 180 0 0 0 chr15 66912206 66912226 -18783528 + (T)n Simple_repeat Simple_repeat 1 20 0 303 344 98 0 chr15 66912230 66912352 -18783402 + L2 LINE L2 3137 3270 -2 821 341 136 48 chr15 66912938 66914368 -18781386 + L2 LINE L2 529 2085 -1229 1119 283 52 43 chr15 66914414 66914874 -18780880 - LTR16B LTR ERVL 0 464 1 425 361 27 47 chr15 66914993 66915253 -18780501 - L2 LINE L2 -311 3002 2750 2403 57 37 0 chr15 66915253 66915551 -18780203 - AluY SINE Alu -2 309 1 425 361 27 47 chr15 66915551 66915611 -18780143 - L2 LINE L2 -563 2750 2690 457 340 39 51 chr15 66916121 66916533 -18779221 + L1MEd LINE L1 635 1041 -5078 23 0 0 0 chr15 66917267 66917290 -18778464 + AT_rich Low_complexity Low_complexity 1 23 0 382 216 52 10 chr15 66917299 66917396 -18778358 - MER103 DNA DNA -62 104 4 286 336 95 7 chr15 66917848 66917985 -18777769 + MIR SINE MIR 28 176 -86 1220 255 123 35 chr15 66918094 66918617 -18777137 - MLT1F1 LTR MaLR 0 567 1 185 156 0 44 chr15 66918813 66918858 -18776896 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5288 94 3 3 chr15 66918902 66919627 -18776127 - L1PA8A LINE L1 -13 6118 5394 212 247 0 28 chr15 66920067 66920128 -18775626 + CT-rich Low_complexity Low_complexity 3 102 0 23 54 0 0 chr15 66920214 66920251 -18775503 + AT_rich Low_complexity Low_complexity 1 37 0 333 297 67 38 chr15 66920775 66920984 -18774770 - L1 LINE L1 -3660 2486 2272 33 25 0 0 chr15 66920984 66921024 -18774730 + AT_rich Low_complexity Low_complexity 1 40 0 483 317 108 51 chr15 66921622 66921978 -18773776 - HAL1b LINE L1 -588 1718 1384 861 197 100 127 chr15 66921978 66922379 -18773375 + MLT1B LTR MaLR 1 390 0 483 317 108 51 chr15 66922379 66922653 -18773101 - HAL1b LINE L1 -922 1384 308 348 330 47 37 chr15 66922907 66923204 -18772550 - L2 LINE L2 0 3313 3014 1316 185 20 60 chr15 66923327 66923708 -18772046 + MSTC LTR MaLR 1 416 -12 204 40 0 0 chr15 66923708 66923733 -18772021 + (A)n Simple_repeat Simple_repeat 1 25 0 305 291 36 9 chr15 66923759 66923869 -18771885 - L2 LINE L2 -541 2773 2661 574 310 38 6 chr15 66923987 66924145 -18771609 - MER58A DNA MER1_type 0 163 1 284 266 13 13 chr15 66924210 66924289 -18771465 + L2 LINE L2 3233 3311 -2 22 0 0 0 chr15 66925178 66925200 -18770554 + AT_rich Low_complexity Low_complexity 1 22 0 20680 44 55 3 chr15 66925763 66928420 -18767334 + L1P LINE L1 1 2795 -3351 291 264 35 14 chr15 66928527 66928671 -18767083 - L1M4 LINE L1 -1114 5032 4886 415 324 61 40 chr15 66928760 66929007 -18766747 - L1M4 LINE L1 -1462 4684 4433 1196 229 77 6 chr15 66929052 66929389 -18766365 - L1M4 LINE L1 -1134 5012 4652 190 270 95 40 chr15 66929736 66929810 -18765944 + MIR3 SINE MIR 87 164 -44 301 304 143 30 chr15 66929839 66930007 -18765747 + MIR SINE MIR 50 236 -26 302 242 0 0 chr15 66930903 66930969 -18764785 + (TA)n Simple_repeat Simple_repeat 2 67 0 441 279 123 0 chr15 66931805 66931959 -18763795 + MIR SINE MIR 20 192 -70 244 372 70 0 chr15 66931960 66932089 -18763665 + MIR SINE MIR 2 139 -123 421 251 86 82 chr15 66933135 66933402 -18762352 + LTR33 LTR ERVL 12 279 -242 1409 226 59 65 chr15 66935156 66935583 -18760171 + L1ME1 LINE L1 5658 6083 -83 3349 99 50 4 chr15 66935583 66936106 -18759648 + L1MA1 LINE L1 5756 6302 0 1409 226 59 65 chr15 66936106 66936188 -18759566 + L1ME1 LINE L1 6083 6164 -2 747 265 45 5 chr15 66936207 66936430 -18759324 + MIR SINE MIR 25 256 -6 254 247 39 26 chr15 66936434 66936511 -18759243 - MIR SINE MIR -24 238 161 227 141 28 28 chr15 66936886 66936957 -18758797 + CT-rich Low_complexity Low_complexity 2 72 0 245 272 62 45 chr15 66937115 66937266 -18758488 + MIR SINE MIR 3 153 -67 219 311 95 0 chr15 66937364 66937438 -18758316 - MIR SINE MIR -79 129 49 359 331 7 46 chr15 66937541 66937692 -18758062 + MIR3 SINE MIR 7 151 -57 265 314 164 0 chr15 66937891 66938031 -18757723 - L3b LINE CR1 -305 1278 1116 580 294 59 0 chr15 66938411 66938581 -18757173 + MER58A DNA MER1_type 14 193 -31 6822 25 1 0 chr15 66938596 66939396 -18756358 - L1PA3 LINE L1 0 6155 5355 201 359 66 9 chr15 66939841 66939947 -18755807 - MIR SINE MIR -64 198 87 2138 129 0 19 chr15 66939998 66940309 -18755445 - AluSx SINE Alu -7 305 1 798 245 0 0 chr15 66940345 66940496 -18755258 - FAM SINE Alu -34 151 1 217 357 0 0 chr15 66941952 66942022 -18753732 - L3 LINE CR1 -881 696 627 189 0 0 0 chr15 66942329 66942350 -18753404 + (CA)n Simple_repeat Simple_repeat 2 22 0 357 368 106 30 chr15 66943100 66943600 -18752154 - L2 LINE L2 -415 2899 2362 242 262 76 14 chr15 66943620 66943796 -18751958 - MIR SINE MIR 0 262 28 243 0 0 0 chr15 66943910 66943937 -18751817 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 357 320 0 0 chr15 66944173 66944270 -18751484 + MER5B DNA MER1_type 7 103 -75 4437 122 9 20 chr15 66944463 66944695 -18751059 - L1PA15 LINE L1 -9 6156 5923 2575 102 11 8 chr15 66944695 66945067 -18750687 + THE1C LTR MaLR 3 375 0 2683 111 0 8 chr15 66945071 66945449 -18750305 + THE1C LTR MaLR 1 375 0 4437 122 9 20 chr15 66945449 66945899 -18749855 - L1PA15 LINE L1 -245 5920 5477 181 262 33 33 chr15 66946159 66946220 -18749534 - MIR SINE MIR -120 142 82 24 32 0 0 chr15 66947774 66947805 -18747949 + AT_rich Low_complexity Low_complexity 1 31 0 1866 184 0 45 chr15 66948171 66948551 -18747203 - MLT1A1 LTR MaLR 0 365 3 577 343 163 18 chr15 66948921 66949662 -18746092 + L2 LINE L2 1913 2761 -553 559 293 111 0 chr15 66952993 66953191 -18742563 - MIR SINE MIR -32 230 11 249 365 84 42 chr15 66953199 66953437 -18742317 + L2 LINE L2 3016 3263 -9 228 215 177 13 chr15 66954586 66954665 -18741089 - MIR3 SINE MIR -7 201 110 344 318 104 0 chr15 66955105 66955259 -18740495 + MIR SINE MIR 26 195 -67 303 122 0 0 chr15 66955734 66955783 -18739971 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 392 326 0 0 chr15 66955810 66955985 -18739769 + C-rich Low_complexity Low_complexity 1 175 0 290 357 51 13 chr15 66956095 66956252 -18739502 - MIR SINE MIR -88 174 12 504 226 19 0 chr15 66956410 66956516 -18739238 - MER94 DNA DNA 0 134 27 255 375 21 7 chr15 66957141 66957285 -18738469 + MIR3 SINE MIR 34 179 -29 208 300 20 50 chr15 66957705 66957805 -18737949 + L2 LINE L2 2241 2337 -977 1822 133 47 4 chr15 66957923 66958202 -18737552 - THE1B LTR MaLR 0 364 74 816 307 57 38 chr15 66958309 66958732 -18737022 + L2 LINE L2 2883 3313 0 1097 257 239 13 chr15 66958885 66959496 -18736258 + LTR50 LTR ERVL 8 756 -39 1654 117 0 0 chr15 66959498 66959712 -18736042 + AluSq SINE Alu 1 214 -99 43773 31 21 1 chr15 66960396 66966423 -18729331 + L1HS LINE L1 4 6155 0 877 100 0 8 chr15 66966469 66966599 -18729155 + AluY SINE Alu 183 311 0 586 132 0 74 chr15 66966601 66966722 -18729032 + L1MA7 LINE L1 5972 6083 -208 184 274 20 0 chr15 66966918 66966969 -18728785 + L2 LINE L2 3237 3288 -25 21 0 0 0 chr15 66967624 66967645 -18728109 + AT_rich Low_complexity Low_complexity 1 21 0 2088 110 35 0 chr15 66967998 66968288 -18727466 - AluSg SINE Alu -10 300 1 333 285 49 21 chr15 66969070 66969214 -18726540 - MIR SINE MIR -4 258 111 206 312 119 9 chr15 66969416 66969525 -18726229 + MIR SINE MIR 15 135 -127 766 254 96 8 chr15 66969553 66969793 -18725961 - MER21B LTR ERV1 -122 741 481 377 305 26 33 chr15 67069793 67069944 -18625810 - LTR33A LTR ERVL -370 153 4 1963 129 0 7 chr15 67070010 67070288 -18625466 + AluSg SINE Alu 14 289 -21 1016 240 135 29 chr15 67070317 67070805 -18624949 + L2 LINE L2 2751 3261 -52 504 271 116 6 chr15 67070917 67071098 -18624656 - L1MC/D LINE L1 -448 6054 5854 29 28 0 0 chr15 67071105 67071141 -18624613 + AT_rich Low_complexity Low_complexity 1 36 0 300 189 0 78 chr15 67071159 67071249 -18624505 + L1MA1 LINE L1 5987 6069 -233 1198 216 23 32 chr15 67071249 67071597 -18624157 - L1MC/D LINE L1 -635 5867 5523 861 259 57 3 chr15 67071574 67071941 -18623813 - L1MC/D LINE L1 -2869 3537 3151 * 2348 249 16 38 chr15 67072161 67072851 -18622903 + L1PA13 LINE L1 1239 1913 -4874 1650 149 25 29 chr15 67072875 67073150 -18622604 + AluSx SINE Alu 2 275 -37 261 57 0 0 chr15 67073903 67073938 -18621816 + (CA)n Simple_repeat Simple_repeat 2 36 0 904 232 65 57 chr15 67073964 67074439 -18621315 - SST1 Satellite centromeric -14 1549 1071 845 307 20 58 chr15 67074560 67075059 -18620695 + L1PA12 LINE L1 1283 1762 -5819 2036 148 33 36 chr15 67075059 67075424 -18620330 + THE1B LTR MaLR 1 364 0 486 248 14 7 chr15 67075424 67075565 -18620189 - L1P LINE L1 -4417 1729 1588 1823 294 23 46 chr15 67075665 67076565 -18619189 - SST1 Satellite centromeric -683 880 1 1942 107 38 25 chr15 67076905 67077224 -18618530 + LTR7 LTR ERV1 76 450 0 470 191 12 0 chr15 67077224 67077308 -18618446 - MER70-int LTR ERVL -2639 2384 2300 3821 193 85 8 chr15 67077327 67078088 -18617666 - MER70-int LTR ERVL -3947 1076 257 1091 308 88 35 chr15 67078192 67078672 -18617082 - L1MC/D LINE L1 -5896 513 9 24 0 0 0 chr15 67079007 67079031 -18616723 + AT_rich Low_complexity Low_complexity 1 24 0 1194 199 105 22 chr15 67079109 67079385 -18616369 - AluJo SINE Alu -1 301 3 32 26 0 0 chr15 67079678 67079717 -18616037 + AT_rich Low_complexity Low_complexity 1 39 0 1107 83 0 0 chr15 67079809 67079954 -18615800 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr15 67080122 67080161 -18615593 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr15 67080219 67080262 -18615492 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr15 67080279 67080304 -18615450 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr15 67080348 67080377 -18615377 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr15 67080416 67080460 -18615294 + AT_rich Low_complexity Low_complexity 1 44 0 2926 280 16 12 chr15 67080612 67081673 -18614081 + L1P LINE L1 2404 3468 -2678 330 26 0 0 chr15 67082019 67082058 -18613696 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr15 67082146 67082181 -18613573 + AT_rich Low_complexity Low_complexity 1 35 0 2981 9 0 0 chr15 67083315 67083633 -18612121 + AluYb8 SINE Alu 1 318 0 274 261 109 0 chr15 67083811 67083903 -18611851 + L2 LINE L2 3202 3303 -10 1255 34 0 0 chr15 67084246 67084395 -18611359 + L1P1 LINE L1 5652 5800 -355 275 42 62 21 chr15 67084397 67084445 -18611309 - MER5B DNA MER1_type -121 57 8 376 297 48 41 chr15 67085262 67085407 -18610347 + MIR SINE MIR 27 172 -90 321 292 43 65 chr15 67085567 67085752 -18610002 - MIR SINE MIR -61 201 21 * 328 224 0 0 chr15 67085696 67085763 -18609991 + MIR SINE MIR 13 79 -183 1399 129 22 141 chr15 67085765 67086128 -18609626 - Tigger5 DNA MER2_type -1 2322 52 5816 34 3 1 chr15 67086229 67086907 -18608847 + L1PA3 LINE L1 5474 6152 -3 1524 149 28 0 chr15 67086926 67087175 -18608579 - Tigger3b DNA MER2_type -644 587 332 417 219 10 31 chr15 67087198 67087294 -18608460 - Tigger3b DNA MER2_type -1137 94 1 1917 119 21 25 chr15 67087385 67087670 -18608084 - AluSx SINE Alu -28 284 1 281 235 62 0 chr15 67088581 67088662 -18607092 + MIR3 SINE MIR 108 193 -15 797 209 6 29 chr15 67090947 67091119 -18604635 - FAM SINE Alu -5 44 1 1983 122 0 37 chr15 67091144 67091470 -18604284 - AluSq SINE Alu 0 315 1 297 194 15 0 chr15 67091512 67091579 -18604175 - MIR SINE MIR -118 144 77 760 132 5 148 chr15 67091851 67091902 -18603852 + Tigger1 DNA MER2_type 2257 2314 -104 1913 132 39 0 chr15 67091902 67092182 -18603572 - AluSx SINE Alu -20 292 2 760 132 5 148 chr15 67092182 67092319 -18603435 + Tigger1 DNA MER2_type 2314 2418 0 423 336 95 16 chr15 67092322 67092637 -18603117 - LTR16C LTR ERVL -17 474 135 1129 272 109 28 chr15 67092807 67093353 -18602401 + MER115 DNA AcHobo 15 643 -50 204 192 39 26 chr15 67094548 67094626 -18601128 + (TTTA)n Simple_repeat Simple_repeat 4 82 0 1130 195 6 70 chr15 67094628 67094941 -18600813 + THE1-int LTR MaLR 460 752 -828 1204 192 0 0 chr15 67095165 67095379 -18600375 - L1MDb LINE L1 -5351 1058 845 1974 221 4 73 chr15 67095380 67095887 -18599867 - MER70A LTR ERVL 0 472 1 4179 188 1 15 chr15 67095895 67096325 -18599429 - MER70A-int LTR ERVL -1 5022 4605 1964 135 3 20 chr15 67096325 67096622 -18599132 + AluSp SINE Alu 1 292 -21 4179 188 1 15 chr15 67096622 67096913 -18598841 - MER70A-int LTR ERVL -418 4605 4311 399 231 11 0 chr15 67097568 67097659 -18598095 + MIR SINE MIR 56 147 -115 987 263 53 63 chr15 67098871 67099752 -18596002 + L1MC5 LINE L1 6038 6862 -946 333 0 0 0 chr15 67099779 67099816 -18595938 + (TG)n Simple_repeat Simple_repeat 2 38 0 256 306 79 37 chr15 67100169 67100385 -18595369 + LTR33A LTR ERVL 295 519 -4 503 339 122 14 chr15 67100892 67101334 -18594420 - L2 LINE L2 -353 2961 2472 252 354 62 0 chr15 67102890 67103003 -18592751 + MIR SINE MIR 20 139 -123 497 276 114 24 chr15 67104189 67104399 -18591355 - MIR SINE MIR -14 248 20 1121 170 32 37 chr15 67104518 67104736 -18591018 + MER20 DNA MER1_type 1 217 -2 2385 91 0 0 chr15 67105267 67105564 -18590190 + AluY SINE Alu 1 297 -14 297 274 63 69 chr15 67106322 67106497 -18589257 + MIR SINE MIR 11 184 -78 2103 134 19 0 chr15 67106690 67106997 -18588757 - AluSq SINE Alu 0 313 1 1014 177 17 0 chr15 67107160 67107335 -18588419 - MER20 DNA MER1_type -1 218 41 433 349 33 0 chr15 67108564 67108716 -18587038 - MIR3 SINE MIR -10 198 42 2187 126 3 3 chr15 67109225 67109534 -18586220 + AluSx SINE Alu 1 309 -3 382 229 54 11 chr15 67109928 67110058 -18585696 + MIR SINE MIR 51 185 -23 229 349 18 109 chr15 67110264 67110594 -18585160 + L2 LINE L2 2866 3165 -107 243 343 0 0 chr15 67111406 67111473 -18584281 + MER5A DNA MER1_type 56 122 -67 395 282 35 21 chr15 67111538 67111680 -18584074 - MER5B DNA MER1_type -6 172 29 603 247 96 0 chr15 67111722 67111868 -18583886 + MER5B DNA MER1_type 1 160 -18 306 283 9 19 chr15 67111871 67111977 -18583777 + MIR SINE MIR 158 262 0 21 0 0 0 chr15 67112007 67112028 -18583726 + AT_rich Low_complexity Low_complexity 1 21 0 473 309 74 36 chr15 67112290 67112734 -18583020 - L1ME3A LINE L1 -222 5948 5488 425 286 73 44 chr15 67112741 67112947 -18582807 - LTR67 LTR ERVL -20 537 326 568 242 16 60 chr15 67113037 67113219 -18582535 - LTR67 LTR ERVL -382 175 2 776 279 43 21 chr15 67113224 67113752 -18582002 - L1ME3A LINE L1 -724 5430 4930 761 245 0 48 chr15 67113861 67114069 -18581685 - MER3 DNA MER1_type 0 209 12 473 299 41 53 chr15 67114129 67114544 -18581210 - L1ME3A LINE L1 -1386 4760 4351 412 288 79 27 chr15 67114823 67115153 -18580601 - L1ME3A LINE L1 -2137 4009 3663 1652 40 10 0 chr15 67115186 67115387 -18580367 - L1P LINE L1 -1500 4646 4444 5260 34 8 0 chr15 67115387 67115960 -18579794 + L1PA4 LINE L1 5555 6150 -5 643 293 63 5 chr15 67116678 67116869 -18578885 + MIR SINE MIR 49 250 -12 309 277 27 36 chr15 67117036 67117148 -18578606 + MIR SINE MIR 152 262 0 192 297 153 8 chr15 67117300 67117418 -18578336 + L3 LINE CR1 1221 1355 -222 493 268 131 0 chr15 67119494 67119647 -18576107 - MIR3 SINE MIR 0 208 36 192 324 0 0 chr15 67120006 67120077 -18575677 - MER5B DNA MER1_type -6 172 102 * 254 233 56 22 chr15 67120015 67120105 -18575649 + MER5A DNA MER1_type 25 117 -72 262 281 22 34 chr15 67120228 67120317 -18575437 + MIR SINE MIR 57 144 -118 194 205 26 0 chr15 67121000 67121039 -18574715 + L2 LINE L2 1888 1927 -1387 816 234 83 5 chr15 67121108 67121300 -18574454 - MIR SINE MIR -5 257 51 2115 137 3 0 chr15 67121787 67122094 -18573660 + AluSx SINE Alu 3 310 -2 523 263 0 0 chr15 67122129 67122228 -18573526 - MER81 DNA DNA 0 114 16 220 226 38 0 chr15 67122238 67122291 -18573463 + MER5A DNA MER1_type 59 113 -76 429 259 117 20 chr15 67122328 67122525 -18573229 + MIR SINE MIR 37 252 -10 771 155 0 0 chr15 67123104 67123220 -18572534 - AluJo SINE Alu -12 300 185 731 136 0 0 chr15 67123216 67123319 -18572435 - AluJo SINE Alu -204 108 6 * 243 349 121 0 chr15 67123580 67123663 -18572091 + L2 LINE L2 3200 3292 -21 431 285 95 6 chr15 67124063 67124221 -18571533 + MIR SINE MIR 73 244 -18 220 147 0 0 chr15 67124321 67124355 -18571399 + L2 LINE L2 3268 3301 -12 253 206 272 22 chr15 67124911 67125003 -18570751 - L2 LINE L2 -8 3264 3150 2253 218 36 8 chr15 67125089 67125593 -18570161 - L1MC3 LINE L1 0 8042 7538 357 183 84 0 chr15 67125869 67125940 -18569814 - L1ME2 LINE L1 -10 6154 6078 * 729 239 39 19 chr15 67125929 67126134 -18569620 + L1ME LINE L1 5418 5626 -538 3132 229 59 5 chr15 67126151 67127345 -18568409 - L1ME2 LINE L1 -117 6047 4799 3157 251 55 6 chr15 67127348 67128333 -18567421 - L1M4 LINE L1 -1186 4960 3928 35 41 0 0 chr15 67128552 67128601 -18567153 + AT_rich Low_complexity Low_complexity 1 49 0 308 245 26 80 chr15 67128603 67128689 -18567065 - L1M4 LINE L1 -917 5229 5153 1957 140 0 3 chr15 67128689 67128981 -18566773 - AluSx SINE Alu -18 294 4 308 245 26 80 chr15 67128981 67129045 -18566709 - L1M4 LINE L1 -993 5153 5087 323 274 48 16 chr15 67129096 67129220 -18566534 + L1M4 LINE L1 2963 3090 -3056 637 365 63 48 chr15 67129246 67130117 -18565637 + L1M4 LINE L1 3144 4038 -2108 410 278 70 17 chr15 67130326 67130556 -18565198 + L1M4 LINE L1 4455 4696 -1450 512 243 21 35 chr15 67130586 67130730 -18565024 + MER69 DNA AcHobo 1 142 -1084 230 239 283 11 chr15 67130866 67130958 -18564796 - MER69 DNA AcHobo -2164 362 246 3278 228 25 24 chr15 67131072 67131982 -18563772 + MER69 DNA AcHobo 1451 2361 -165 642 220 33 0 chr15 67132045 67132195 -18563559 + MER69 DNA AcHobo 2365 2519 -7 1381 216 66 3 chr15 67132270 67132590 -18563164 - MER58B DNA MER1_type 0 341 2 6163 156 12 11 chr15 67132941 67134771 -18560983 + L1PB1 LINE L1 4317 6151 0 243 88 0 0 chr15 67136062 67136096 -18559658 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr15 67136248 67136278 -18559476 + (CA)n Simple_repeat Simple_repeat 2 31 0 307 303 118 20 chr15 67137374 67137526 -18558228 - MIR3 SINE MIR -6 202 36 1324 182 184 53 chr15 67138167 67138596 -18557158 - MLT2B2 LTR ERVL -2 552 3 296 286 63 48 chr15 67138991 67139138 -18556616 + MIR SINE MIR 41 187 -60 1296 199 11 11 chr15 67139429 67139706 -18556048 + L1MC4a LINE L1 6335 6611 -1197 749 153 0 0 chr15 67139720 67139838 -18555916 - MER6A DNA MER2_type -399 206 89 1682 210 106 35 chr15 67139852 67140304 -18555450 + L1MC4 LINE L1 6584 7067 -975 2159 195 71 9 chr15 67140304 67140755 -18554999 + MLT1D LTR MaLR 1 479 -26 239 222 0 0 chr15 67140759 67140805 -18554949 + (TG)n Simple_repeat Simple_repeat 1 46 0 3597 170 8 25 chr15 67140849 67141461 -18554293 - MER6A DNA MER2_type -3 602 1 1900 209 26 9 chr15 67141462 67141888 -18553866 + L1MC4 LINE L1 7080 7512 -530 298 235 141 0 chr15 67142007 67142092 -18553662 + MLT1C LTR MaLR 6 102 -365 653 176 0 19 chr15 67142092 67142103 -18553651 - L1PA8A LINE L1 -10 6121 6111 180 0 0 0 chr15 67142103 67142123 -18553631 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 653 176 0 19 chr15 67142123 67142219 -18553535 - L1PA8A LINE L1 -20 6111 6016 358 65 0 0 chr15 67142219 67142265 -18553489 - L1PA10 LINE L1 -115 6053 6008 1339 215 43 40 chr15 67142265 67142568 -18553186 + MLT1C LTR MaLR 95 401 -66 2053 134 3 7 chr15 67142568 67142879 -18552875 - AluSx SINE Alu 0 312 1 1339 215 43 40 chr15 67142879 67142947 -18552807 + MLT1C LTR MaLR 401 467 0 180 282 42 92 chr15 67143335 67143477 -18552277 - MIR SINE MIR -108 154 20 450 295 162 19 chr15 67143613 67143823 -18551931 + MIR SINE MIR 23 262 0 282 274 0 0 chr15 67143999 67144072 -18551682 + MER116 DNA Mariner 8 80 0 9312 103 32 9 chr15 67145653 67146908 -18548846 + HSMAR1 DNA Mariner 1 1284 -3 325 132 13 13 chr15 67147176 67147252 -18548502 + GA-rich Low_complexity Low_complexity 1 76 0 1218 206 59 73 chr15 67147483 67147823 -18547931 - MER46C DNA MER2_type -3 335 1 206 233 8 150 chr15 67148396 67148516 -18547238 - L2 LINE L2 0 3272 3170 1351 190 11 18 chr15 67148773 67149057 -18546697 + L1MA9 LINE L1 5017 5298 -848 1095 65 7 0 chr15 67149062 67149201 -18546553 + L1P LINE L1 1 140 -6006 3537 67 7 7 chr15 67149201 67149649 -18546105 + LTR7 LTR ERV1 1 448 -2 20234 93 58 48 chr15 67149651 67152909 -18542845 + HERVH LTR ERV1 1 3290 -4423 3413 112 6 2 chr15 67152899 67153399 -18542355 + HERVH LTR ERV1 3492 3993 -3720 * 4313 143 9 1 chr15 67153401 67154058 -18541696 + HERVH LTR ERV1 4488 5149 -2564 1392 113 18 57 chr15 67154059 67154288 -18541466 + HERVH LTR ERV1 5600 5819 -1894 * 2630 71 45 13 chr15 67154286 67154666 -18541088 + HERVH LTR ERV1 7322 7713 0 3429 76 4 9 chr15 67154666 67155116 -18540638 + LTR7 LTR ERV1 1 448 -2 2331 93 3 0 chr15 67155118 67155430 -18540324 + L1P LINE L1 136 448 -5698 15186 26 0 0 chr15 67155431 67157871 -18537883 + L1PA3 LINE L1 3711 6150 -5 3758 183 24 55 chr15 67157883 67158395 -18537359 + L1MA9 LINE L1 5293 5764 -548 216 0 0 0 chr15 67158395 67158419 -18537335 + (TG)n Simple_repeat Simple_repeat 2 25 0 3758 183 24 55 chr15 67158419 67158787 -18536967 + L1MA9 LINE L1 5764 6142 -170 1023 142 0 0 chr15 67158805 67158981 -18536773 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 221 81 0 27 chr15 67158981 67159018 -18536736 + (AGGGGG)n Simple_repeat Simple_repeat 6 41 0 304 231 0 0 chr15 67159029 67159094 -18536660 + L1MA9 LINE L1 6170 6234 -78 3720 153 61 33 chr15 67159095 67159973 -18535781 - MER52C LTR ERV1 -2 1276 395 313 167 0 30 chr15 67160824 67160890 -18534864 - MLT2B1 LTR ERVL -7 513 450 238 67 44 0 chr15 67160890 67160935 -18534819 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2687 195 32 25 chr15 67160938 67161467 -18534287 - MLT2B3 LTR ERVL -20 534 2 267 77 0 0 chr15 67161801 67161840 -18533914 - Alu SINE Alu -269 39 1 558 29 0 0 chr15 67161898 67161966 -18533788 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 350 188 242 16 chr15 67163233 67163361 -18532393 - Charlie7 DNA MER1_type -2455 157 1 278 344 138 5 chr15 67164344 67164539 -18531215 + MIR SINE MIR 24 244 -18 2235 144 23 18 chr15 67164867 67165263 -18530491 - L1MB5 LINE L1 -10 6164 5767 248 338 80 24 chr15 67165304 67165517 -18530237 + MIR SINE MIR 6 230 -32 2032 58 54 8 chr15 67165797 67166057 -18529697 + AluY SINE Alu 31 302 -9 280 301 75 20 chr15 67166100 67166246 -18529508 - MIR SINE MIR -81 181 28 2216 161 20 22 chr15 67166420 67166825 -18528929 - L1MA7 LINE L1 -6 6285 5882 1916 161 92 0 chr15 67166857 67167217 -18528537 + L1M2 LINE L1 5389 5781 -510 262 277 211 12 chr15 67167214 67167380 -18528374 - HAL1b LINE L1 -408 940 742 * 1867 133 53 0 chr15 67167669 67167954 -18527800 - AluSq SINE Alu -13 300 1 616 295 98 51 chr15 67168062 67168570 -18527184 - HAL1b LINE L1 -816 532 1 31 58 0 0 chr15 67168855 67168907 -18526847 + AT_rich Low_complexity Low_complexity 1 52 0 294 311 0 42 chr15 67169648 67169715 -18526039 + MIR SINE MIR 16 84 -132 696 175 108 134 chr15 67169715 67169938 -18525816 + MER20 DNA MER1_type 1 217 -2 294 311 0 42 chr15 67169938 67170022 -18525732 + MIR SINE MIR 84 153 -63 555 244 19 31 chr15 67170992 67171156 -18524598 + MIR SINE MIR 6 161 -63 325 188 10 10 chr15 67171620 67171716 -18524038 + (ATG)n Simple_repeat Simple_repeat 1 96 0 457 294 61 20 chr15 67171719 67171916 -18523838 - MIR SINE MIR 0 262 58 222 260 25 118 chr15 67172046 67172209 -18523545 + MIR SINE MIR 39 183 -76 222 191 0 0 chr15 67173780 67173827 -18521927 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 458 311 99 5 chr15 67173937 67174149 -18521605 + MIR SINE MIR 5 236 -26 1296 147 0 102 chr15 67174829 67175094 -18520660 + AluJo SINE Alu 50 287 -25 2347 84 10 0 chr15 67175104 67175401 -18520353 + AluY SINE Alu 1 300 -11 26 50 0 0 chr15 67175402 67175442 -18520312 + AT_rich Low_complexity Low_complexity 1 40 0 859 212 40 75 chr15 67176962 67177188 -18518566 + MER20 DNA MER1_type 2 219 0 285 247 0 0 chr15 67178043 67178124 -18517630 + (TA)n Simple_repeat Simple_repeat 1 81 0 23 68 0 0 chr15 67178398 67178442 -18517312 + AT_rich Low_complexity Low_complexity 1 44 0 402 21 0 0 chr15 67182074 67182121 -18513633 + (CA)n Simple_repeat Simple_repeat 2 48 0 225 312 36 43 chr15 67184273 67184411 -18511343 - MIR SINE MIR -56 206 70 260 197 0 13 chr15 67184619 67184695 -18511059 + (TA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr15 67184725 67184756 -18510998 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 67186061 67186084 -18509670 + AT_rich Low_complexity Low_complexity 1 23 0 3688 116 11 17 chr15 67188226 67188395 -18507359 + L1PB1 LINE L1 5619 5787 -364 336 24 0 0 chr15 67188395 67188436 -18507318 + (CA)n Simple_repeat Simple_repeat 2 42 0 3688 116 11 17 chr15 67188436 67188801 -18506953 + L1PB1 LINE L1 5787 6150 -1 312 241 60 0 chr15 67192202 67192285 -18503469 - MIR3 SINE MIR -7 201 114 237 33 0 0 chr15 67194922 67194952 -18500802 + (TA)n Simple_repeat Simple_repeat 2 31 0 195 129 0 0 chr15 67194973 67195004 -18500750 + (T)n Simple_repeat Simple_repeat 1 31 0 222 232 89 89 chr15 67195985 67196097 -18499657 + MIR SINE MIR 81 192 -70 221 301 145 0 chr15 67196323 67196406 -18499348 + MIR SINE MIR 60 154 -108 432 0 0 0 chr15 67197120 67197168 -18498586 + (TG)n Simple_repeat Simple_repeat 2 49 0 214 237 13 53 chr15 67197773 67197849 -18497905 + MIR SINE MIR 157 229 -33 2421 53 0 0 chr15 67199620 67199932 -18495822 - AluY SINE Alu 0 312 1 2161 136 0 0 chr15 67200101 67200409 -18495345 - AluSq SINE Alu -5 308 1 292 309 44 22 chr15 67200410 67200546 -18495208 + HAL1 LINE L1 1564 1702 -805 237 231 67 39 chr15 67201299 67201403 -18494351 - L1MCa LINE L1 -4362 2064 1958 40 21 0 0 chr15 67201457 67201504 -18494250 + AT_rich Low_complexity Low_complexity 1 47 0 422 300 94 97 chr15 67201570 67202433 -18493321 + L1MC4a LINE L1 2418 3277 -2869 23 33 0 0 chr15 67202488 67202518 -18493236 + AT_rich Low_complexity Low_complexity 1 30 0 1447 303 123 17 chr15 67202981 67204607 -18491147 + L1MC4a LINE L1 3928 5732 -389 282 274 48 8 chr15 67204623 67204747 -18491007 + L1MC4a LINE L1 5801 5929 -1879 267 31 0 0 chr15 67204890 67204922 -18490832 + (TA)n Simple_repeat Simple_repeat 1 32 0 258 202 12 60 chr15 67204931 67205015 -18490739 - L1MC4 LINE L1 -1347 6695 6616 25 51 0 0 chr15 67205088 67205127 -18490627 + AT_rich Low_complexity Low_complexity 1 39 0 324 243 210 22 chr15 67205544 67205666 -18490088 + MIR SINE MIR 21 164 -61 196 309 36 12 chr15 67206023 67206107 -18489647 - MIR SINE MIR -51 211 126 869 141 52 68 chr15 67206863 67207055 -18488699 - MER53 DNA DNA 0 189 1 352 320 36 2 chr15 67207275 67207446 -18488308 + MIR SINE MIR 1 176 -48 254 286 0 14 chr15 67207452 67207522 -18488232 + MER5A DNA MER1_type 37 105 -84 1244 119 0 0 chr15 67207611 67207787 -18487967 - AluSq SINE Alu -6 307 132 470 192 27 123 chr15 67207788 67207934 -18487820 + MER58B DNA MER1_type 210 341 0 1302 210 78 98 chr15 67207990 67208159 -18487595 - L1MC5 LINE L1 -298 7663 7492 387 0 0 0 chr15 67208159 67208202 -18487552 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1302 210 78 98 chr15 67208202 67208750 -18487004 - L1MC5 LINE L1 -469 7492 6960 494 238 238 9 chr15 67208885 67209100 -18486654 - L1MC4a LINE L1 -1830 5978 5716 445 235 171 23 chr15 67209240 67209410 -18486344 + Charlie2 DNA MER1_type 2 212 -2650 336 48 0 0 chr15 67209410 67209452 -18486302 + (CA)n Simple_repeat Simple_repeat 2 43 0 445 235 171 23 chr15 67209452 67209498 -18486256 + Charlie2 DNA MER1_type 212 250 -2612 1767 191 93 53 chr15 67209557 67210446 -18485308 + Charlie2 DNA MER1_type 1860 2860 -2 25 0 0 0 chr15 67211369 67211394 -18484360 + AT_rich Low_complexity Low_complexity 1 25 0 3648 145 37 83 chr15 67212678 67213141 -18482613 + MER4E LTR ERV1 1 413 -366 330 42 0 0 chr15 67213141 67213189 -18482565 - L1PA3 LINE L1 0 6155 6108 3648 145 37 83 chr15 67213189 67213518 -18482236 + MER4E LTR ERV1 413 756 -23 2272 122 0 0 chr15 67213519 67213823 -18481931 + AluSc SINE Alu 2 305 -4 237 341 0 11 chr15 67215232 67215320 -18480434 + MIR SINE MIR 68 154 -108 1317 104 0 84 chr15 67216031 67216233 -18479521 + AluSx SINE Alu 1 185 -127 382 342 22 16 chr15 67217803 67217987 -18477767 + MIR3 SINE MIR 13 197 -11 369 0 0 0 chr15 67218091 67218132 -18477622 + (TG)n Simple_repeat Simple_repeat 1 41 0 213 175 0 0 chr15 67219161 67219201 -18476553 + GA-rich Low_complexity Low_complexity 1 40 0 2269 90 0 23 chr15 67221555 67221856 -18473898 - AluSc SINE Alu -15 294 1 251 351 178 0 chr15 67223539 67223713 -18472041 + MIR SINE MIR 47 251 -11 202 285 114 32 chr15 67224193 67224351 -18471403 + L2 LINE L2 3086 3256 -57 250 299 10 21 chr15 67225979 67226076 -18469678 + GA-rich Low_complexity Low_complexity 2 97 0 2002 169 13 15 chr15 67227013 67227404 -18468350 + MLT1B LTR MaLR 1 390 0 216 300 119 56 chr15 67228768 67228928 -18466826 - L3 LINE CR1 -11 1566 1397 226 316 35 44 chr15 67229183 67229297 -18466457 - L2 LINE L2 -1 3312 3200 223 316 17 51 chr15 67229800 67229917 -18465837 + MIR SINE MIR 57 169 -93 339 249 23 102 chr15 67229933 67230110 -18465644 + MIR3 SINE MIR 19 181 -27 263 310 264 0 chr15 67230143 67230317 -18465437 + L3 LINE CR1 429 648 -929 378 0 0 0 chr15 67230333 67230375 -18465379 + (TA)n Simple_repeat Simple_repeat 2 43 0 426 283 68 34 chr15 67230838 67231015 -18464739 - MER117 DNA MER1_type -14 183 1 708 161 0 0 chr15 67232384 67232527 -18463227 + (TGG)n Simple_repeat Simple_repeat 1 143 0 236 242 0 0 chr15 67233229 67233291 -18462463 - MIR SINE MIR -122 140 79 1961 155 0 7 chr15 67234169 67234465 -18461289 - AluSx SINE Alu -18 294 1 231 317 37 0 chr15 67234544 67234626 -18461128 + L3b LINE CR1 1299 1383 -200 234 310 101 23 chr15 67234714 67234843 -18460911 + L3b LINE CR1 1421 1559 -24 2275 163 45 10 chr15 67234962 67235366 -18460388 + MSTB LTR MaLR 9 426 0 212 111 22 22 chr15 67235387 67235432 -18460322 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 265 288 108 0 chr15 67236547 67236658 -18459096 - MIR SINE MIR -65 143 21 1277 193 8 8 chr15 67238288 67238542 -18457212 + L1MD3 LINE L1 7742 7995 0 799 231 82 66 chr15 67240581 67241018 -18454736 + MLT1J1 LTR MaLR 3 446 0 2158 156 50 3 chr15 67241079 67241457 -18454297 + MSTD LTR MaLR 1 396 0 517 291 74 0 chr15 67241461 67241650 -18454104 - MIR SINE MIR -26 236 34 190 163 102 41 chr15 67242167 67242216 -18453538 - L2 LINE L2 -1 3312 3261 252 0 0 0 chr15 67242845 67242873 -18452881 + (CA)n Simple_repeat Simple_repeat 1 28 0 249 330 50 45 chr15 67243357 67243536 -18452218 - MIR SINE MIR -38 224 45 1542 211 68 12 chr15 67244950 67245287 -18450467 + MLT1A1 LTR MaLR 10 365 0 2268 109 6 10 chr15 67245371 67245682 -18450072 - AluSg SINE Alu 0 310 1 182 339 0 0 chr15 67247236 67247301 -18448453 - MIR SINE MIR -117 145 81 239 292 133 0 chr15 67247378 67247498 -18448256 - MER5A DNA MER1_type -28 161 26 229 264 32 32 chr15 67248438 67248563 -18447191 + CT-rich Low_complexity Low_complexity 2 126 0 363 301 117 19 chr15 67248806 67249012 -18446742 - MIR SINE MIR 0 262 37 729 207 39 62 chr15 67249671 67249879 -18445875 + MER3 DNA MER1_type 2 204 -5 192 333 0 0 chr15 67250015 67250072 -18445682 - MIR SINE MIR -111 151 95 273 235 0 15 chr15 67252054 67252122 -18443632 - MIR3 SINE MIR -28 180 114 442 254 63 32 chr15 67252393 67252519 -18443235 - MIR3 SINE MIR -46 162 33 317 274 107 44 chr15 67254254 67254509 -18441245 + L2 LINE L2 2725 2991 -322 549 188 141 7 chr15 67256400 67256549 -18439205 + MER58B DNA MER1_type 172 340 -1 537 293 26 30 chr15 67256652 67256885 -18438869 - MIR SINE MIR -6 256 26 316 178 110 27 chr15 67258548 67258621 -18437133 - MER5A DNA MER1_type -107 82 4 661 238 25 11 chr15 67258629 67258833 -18436921 + MIR SINE MIR 23 236 -26 378 115 0 0 chr15 67258849 67258910 -18436844 + (CA)n Simple_repeat Simple_repeat 2 62 0 221 167 0 62 chr15 67260127 67260175 -18435579 + MIR SINE MIR 114 158 -104 881 174 87 0 chr15 67260447 67260608 -18435146 - MER5A DNA MER1_type -12 177 3 363 303 86 31 chr15 67261824 67261986 -18433768 - MIR SINE MIR -72 190 20 234 0 0 0 chr15 67263208 67263234 -18432520 + (A)n Simple_repeat Simple_repeat 1 26 0 245 335 143 44 chr15 67263244 67263426 -18432328 + MIR SINE MIR 53 252 -10 407 317 15 20 chr15 67264189 67264276 -18431478 - MIR SINE MIR 0 262 176 2130 117 10 0 chr15 67264276 67264583 -18431171 - AluSx SINE Alu -2 310 1 407 317 15 20 chr15 67264583 67264690 -18431064 - MIR SINE MIR -86 176 71 180 178 0 89 chr15 67264893 67264938 -18430816 + L3 LINE CR1 918 958 -619 2182 122 0 0 chr15 67265810 67266122 -18429632 + AluSx SINE Alu 1 312 0 236 283 0 0 chr15 67266431 67266491 -18429263 + L2 LINE L2 3254 3313 0 251 278 110 46 chr15 67267939 67268112 -18427642 + MIR SINE MIR 20 203 -59 217 269 86 11 chr15 67268247 67268340 -18427414 + MIR SINE MIR 147 246 -16 2067 136 0 0 chr15 67269249 67269699 -18426055 + AluSx SINE Alu 1 450 0 474 18 0 0 chr15 67271413 67271468 -18424286 + (TG)n Simple_repeat Simple_repeat 1 55 0 414 264 92 14 chr15 67272359 67272554 -18423200 + MIR SINE MIR 30 244 -18 300 299 53 94 chr15 67273255 67273499 -18422255 - L2 LINE L2 -1 3271 3038 188 316 35 0 chr15 67273486 67273543 -18422211 + MIR SINE MIR 93 151 -111 * 2085 113 10 0 chr15 67273679 67273979 -18421775 - AluSx SINE Alu -9 303 1 2004 108 0 7 chr15 67273979 67274266 -18421488 - AluSx SINE Alu -16 296 12 731 241 27 45 chr15 67274459 67274679 -18421075 + MIR SINE MIR 29 244 -18 440 250 25 8 chr15 67274859 67274979 -18420775 + MIR SINE MIR 105 226 -36 577 315 62 75 chr15 67275806 67276526 -18419228 + L2 LINE L2 2267 2977 -337 395 292 93 6 chr15 67276593 67276754 -18419000 + L2 LINE L2 3137 3311 -2 1846 157 0 0 chr15 67277897 67278190 -18417564 - AluSx SINE Alu -19 293 1 191 179 51 0 chr15 67278890 67278929 -18416825 - L2 LINE L2 -12 3301 3261 186 176 0 118 chr15 67279874 67279925 -18415829 - L2 LINE L2 -2879 435 391 288 307 73 0 chr15 67280664 67280801 -18414953 + L1ME4a LINE L1 5673 5819 -343 1886 127 137 6 chr15 67280856 67281178 -18414576 + MER47A DNA MER2_type 3 366 0 417 274 104 45 chr15 67281371 67281572 -18414182 + L1MC4a LINE L1 5765 5977 -1831 24 53 0 0 chr15 67281762 67281800 -18413954 + AT_rich Low_complexity Low_complexity 1 38 0 23 68 0 0 chr15 67281843 67281887 -18413867 + AT_rich Low_complexity Low_complexity 1 44 0 2052 203 44 14 chr15 67281889 67282391 -18413363 - L1MB8 LINE L1 -9 6169 5653 569 197 72 13 chr15 67282541 67282693 -18413061 + L1ME4a LINE L1 5959 6119 -2 1915 131 0 0 chr15 67283201 67283476 -18412278 + AluSx SINE Alu 1 275 -37 324 0 0 0 chr15 67283480 67283516 -18412238 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1634 276 52 60 chr15 67283607 67284219 -18411535 - MER115 DNA AcHobo 0 693 87 475 181 69 3 chr15 67284286 67284439 -18411315 - MER20 DNA MER1_type -2 217 1 193 298 0 0 chr15 67284489 67284546 -18411208 + L2 LINE L2 3216 3272 0 834 227 49 18 chr15 67285388 67285613 -18410141 + Charlie1 DNA MER1_type 1 232 -2529 617 191 29 0 chr15 67285606 67285742 -18410012 + Charlie1 DNA MER1_type 2622 2761 0 * 203 138 0 0 chr15 67287075 67287104 -18408650 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 249 302 68 0 chr15 67287512 67287594 -18408160 - MIR SINE MIR -97 111 43 440 221 19 10 chr15 67288010 67288114 -18407640 + MER103 DNA DNA 52 156 -10 399 292 50 43 chr15 67292364 67292525 -18403229 + MIR SINE MIR 9 170 -92 243 300 108 70 chr15 67293119 67293546 -18402208 + L2 LINE L2 1281 1723 -1591 277 346 94 16 chr15 67294455 67294582 -18401172 + MIR SINE MIR 34 170 -38 183 188 0 0 chr15 67296873 67296921 -18398833 + A-rich Low_complexity Low_complexity 1 48 0 363 264 0 11 chr15 67297709 67297969 -18397785 + (TG)n Simple_repeat Simple_repeat 1 257 0 611 203 15 15 chr15 67298623 67298756 -18396998 + MIR3 SINE MIR 75 207 -1 374 279 71 56 chr15 67300924 67301121 -18394633 - MIR SINE MIR -59 203 4 774 263 28 99 chr15 67302001 67302355 -18393399 + MER102b DNA MER1_type 3 331 -10 187 327 0 0 chr15 67302692 67302747 -18393007 + L2 LINE L2 3211 3265 -7 358 328 73 5 chr15 67303991 67304183 -18391571 - L1ME3A LINE L1 -312 5858 5654 1039 211 31 31 chr15 67304188 67304411 -18391343 - MER58A DNA MER1_type 0 224 2 449 240 233 7 chr15 67304428 67304574 -18391180 + MER5A DNA MER1_type 9 187 -2 384 256 89 30 chr15 67304627 67304887 -18390867 - L1ME3A LINE L1 -575 5587 5296 207 0 0 0 chr15 67304932 67304955 -18390799 + (TG)n Simple_repeat Simple_repeat 2 24 0 400 126 2 2 chr15 67305218 67305308 -18390446 + AluS SINE Alu 227 305 0 2728 216 91 6 chr15 67305333 67306003 -18389751 + L1MC3 LINE L1 7058 7784 -1 363 276 101 35 chr15 67306065 67306293 -18389461 - L1ME3A LINE L1 -1822 4324 4082 640 143 19 0 chr15 67306320 67306425 -18389329 - AluSx SINE Alu -6 304 198 5383 44 2 0 chr15 67306427 67307064 -18388690 + L1PA5 LINE L1 5510 6147 -7 1323 146 0 0 chr15 67307112 67307311 -18388443 - AluSx SINE Alu -111 201 3 197 307 164 20 chr15 67308405 67308649 -18387105 + L2 LINE L2 1874 2152 -1162 495 273 162 7 chr15 67308657 67308811 -18386943 + MER5A DNA MER1_type 12 189 0 234 309 119 56 chr15 67308863 67309132 -18386622 + L2 LINE L2 2213 2498 -816 351 253 56 79 chr15 67309229 67309407 -18386347 + MIR SINE MIR 85 258 -4 676 317 21 16 chr15 67309980 67310223 -18385531 - MIR SINE MIR -3 259 16 188 188 31 94 chr15 67311067 67311131 -18384623 + L2 LINE L2 3205 3264 -8 2090 181 65 11 chr15 67311639 67312082 -18383672 + MLT1C LTR MaLR 1 467 0 292 243 19 19 chr15 67312289 67312392 -18383362 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1911 159 39 18 chr15 67313109 67313368 -18382386 - MER58B DNA MER1_type -2079 341 69 2312 92 0 0 chr15 67313368 67313681 -18382073 + AluSx SINE Alu 1 313 0 1911 159 39 18 chr15 67313681 67313752 -18382002 - MER58B DNA MER1_type -2351 69 1 240 253 101 20 chr15 67314480 67314579 -18381175 + MIR SINE MIR 48 154 -108 196 264 42 28 chr15 67315286 67315358 -18380396 + MIR SINE MIR 77 149 -113 1158 168 21 0 chr15 67315440 67315630 -18380124 - MER20 DNA MER1_type -25 194 1 4054 189 64 6 chr15 67317810 67319376 -18376378 - L1MB7 LINE L1 -16 6168 4518 227 250 48 24 chr15 67319467 67319551 -18376203 + L3 LINE CR1 1419 1504 -73 234 0 0 0 chr15 67319576 67319602 -18376152 + (T)n Simple_repeat Simple_repeat 1 26 0 1045 193 28 56 chr15 67320235 67320484 -18375270 + MLT1D LTR MaLR 262 503 -2 1941 247 39 78 chr15 67320493 67321261 -18374493 - MER31-int LTR ERV1 -919 4017 3282 198 0 0 0 chr15 67321261 67321283 -18374471 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1941 247 39 78 chr15 67321283 67321352 -18374402 - MER31-int LTR ERV1 -1654 3282 3212 214 246 49 0 chr15 67323614 67323675 -18372079 - L2 LINE L2 -49 3264 3201 358 102 119 0 chr15 67323770 67323829 -18371925 + AluJ/FLAM SINE Alu 2 67 -235 554 293 46 70 chr15 67326505 67326850 -18368904 + L1ME4a LINE L1 5508 5844 -277 978 187 14 9 chr15 67327451 67327665 -18368089 - L1MB7 LINE L1 -317 5867 5653 424 235 86 31 chr15 67327806 67327968 -18367786 + L1ME4a LINE L1 5950 6120 -1 1897 147 7 0 chr15 67328478 67328792 -18366962 + AluSx SINE Alu 2 317 0 393 262 37 0 chr15 67328883 67328990 -18366764 - Zaphod DNA AcHobo 0 4031 3921 2058 126 0 0 chr15 67329530 67329831 -18365923 + AluY SINE Alu 1 301 -10 335 331 77 7 chr15 67329878 67330097 -18365657 - MIR SINE MIR -29 233 3 21 0 0 0 chr15 67330379 67330400 -18365354 + AT_rich Low_complexity Low_complexity 1 21 0 867 214 17 34 chr15 67330406 67330644 -18365110 - L1MC2 LINE L1 -26 6318 6085 1187 251 38 8 chr15 67331112 67331443 -18364311 + L1ME3 LINE L1 5831 6170 0 1619 155 0 7 chr15 67331502 67331773 -18363981 - AluY SINE Alu -12 299 31 196 303 30 0 chr15 67332696 67332762 -18362992 + MIR SINE MIR 119 186 -76 2488 77 0 13 chr15 67332859 67333171 -18362583 - AluY SINE Alu -1 310 3 2350 114 0 0 chr15 67334278 67334584 -18361170 - AluSx SINE Alu -4 308 3 1030 168 6 6 chr15 67334618 67334779 -18360975 + MER58A DNA MER1_type 3 163 0 726 301 21 8 chr15 67336091 67336330 -18359424 - MIR SINE MIR -19 243 2 453 220 113 7 chr15 67337610 67337751 -18358003 - MIR SINE MIR -57 205 50 274 297 58 13 chr15 67338561 67338716 -18357038 + MER103 DNA DNA 4 165 -1 358 330 78 18 chr15 67339820 67340038 -18355716 - MIR SINE MIR -31 231 1 345 324 60 22 chr15 67340045 67340227 -18355527 + L3 LINE CR1 1302 1490 -87 465 217 35 42 chr15 67340424 67340567 -18355187 + MIR3 SINE MIR 36 177 -31 370 226 11 0 chr15 67340967 67341060 -18354694 + MIR SINE MIR 47 140 -68 785 312 11 70 chr15 67341991 67342347 -18353407 - MER102b DNA MER1_type -3 338 4 246 32 0 0 chr15 67343426 67343457 -18352297 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 350 8 8 chr15 67344602 67344719 -18351035 - MIR SINE MIR -37 225 109 264 302 81 0 chr15 67345281 67345367 -18350387 + L2 LINE L2 3221 3313 0 1080 203 0 0 chr15 67345467 67345654 -18350100 - MER5A DNA MER1_type -2 187 1 851 175 9 21 chr15 67346408 67346634 -18349120 + AluJb SINE Alu 1 284 -28 218 290 11 43 chr15 67347076 67347169 -18348585 + MIR3 SINE MIR 113 202 -6 475 256 103 36 chr15 67348600 67348901 -18346853 + L1ME4a LINE L1 5800 6120 -1 207 0 0 0 chr15 67349645 67349668 -18346086 + (A)n Simple_repeat Simple_repeat 1 23 0 366 246 18 36 chr15 67351123 67351233 -18344521 + MIR SINE MIR 39 146 -116 631 246 19 57 chr15 67351301 67351525 -18344229 + MIR SINE MIR 50 262 0 954 268 123 44 chr15 67352025 67352592 -18343162 + MLT1L LTR MaLR 2 588 0 208 378 11 0 chr15 67353372 67353462 -18342292 - MIR SINE MIR -84 124 34 390 240 100 0 chr15 67354126 67354276 -18341478 - MER103 DNA DNA -1 165 1 304 221 0 26 chr15 67357079 67357156 -18338598 + L2 LINE L2 3197 3271 -1 191 36 36 0 chr15 67357735 67357763 -18337991 + (CA)n Simple_repeat Simple_repeat 1 29 0 1165 201 46 23 chr15 67357873 67358058 -18337696 + L1MC2 LINE L1 5555 5749 -595 1609 201 134 19 chr15 67358058 67358477 -18337277 + MLT1C LTR MaLR 1 467 0 1165 201 46 23 chr15 67358477 67358554 -18337200 + L1MC2 LINE L1 5749 5823 -521 623 165 9 0 chr15 67358554 67358663 -18337091 + AluSc SINE Alu 189 298 -11 2272 92 0 0 chr15 67358677 67359003 -18336751 + AluY SINE Alu 1 326 0 2586 155 26 18 chr15 67359003 67359494 -18336260 + L1MC2 LINE L1 5824 6318 -26 21 0 0 0 chr15 67359500 67359521 -18336233 + AT_rich Low_complexity Low_complexity 1 21 0 459 314 80 7 chr15 67359802 67360013 -18335741 + MIR SINE MIR 3 225 -37 2543 60 0 0 chr15 67360068 67360369 -18335385 - AluY SINE Alu -10 301 1 338 313 80 0 chr15 67360935 67361047 -18334707 + L2 LINE L2 3151 3271 -1 247 197 98 0 chr15 67361997 67362058 -18333696 + MIR3 SINE MIR 131 197 -11 808 254 39 0 chr15 67363268 67363449 -18332305 - MER82 DNA MER2_type -6 647 460 22 35 0 0 chr15 67363451 67363480 -18332274 + AT_rich Low_complexity Low_complexity 1 29 0 2279 223 20 4 chr15 67363532 67363989 -18331765 - MER82 DNA MER2_type -189 464 1 360 0 0 0 chr15 67365864 67365904 -18329850 + (TA)n Simple_repeat Simple_repeat 1 40 0 405 176 22 22 chr15 67365906 67365997 -18329757 - L1 LINE L1 -855 5291 5201 2006 133 0 10 chr15 67365997 67366298 -18329456 - AluSx SINE Alu -14 298 1 617 257 21 7 chr15 67366586 67366730 -18329024 - MER5B DNA MER1_type -32 146 1 301 261 25 151 chr15 67367608 67367807 -18327947 + HAL1 LINE L1 4 177 -2330 1863 274 72 50 chr15 67368137 67368872 -18326882 + HAL1 LINE L1 631 1401 -1106 180 111 0 0 chr15 67368872 67368899 -18326855 + (CA)n Simple_repeat Simple_repeat 1 27 0 1863 274 72 50 chr15 67368899 67369267 -18326487 + HAL1 LINE L1 1401 1759 -748 516 313 84 27 chr15 67369779 67369967 -18325787 - L2 LINE L2 -1108 2206 2030 1827 134 3 3 chr15 67369967 67370270 -18325484 + AluSx SINE Alu 1 303 0 516 313 84 27 chr15 67370270 67370448 -18325306 - L2 LINE L2 -1284 2030 1818 658 271 140 19 chr15 67370473 67370680 -18325074 - MIR SINE MIR -15 247 16 941 163 13 0 chr15 67371248 67371401 -18324353 + L1MC1 LINE L1 6171 6325 -8 229 246 0 18 chr15 67371457 67371514 -18324240 - MER20 DNA MER1_type -163 56 1 462 49 0 0 chr15 67371806 67371867 -18323887 + (CA)n Simple_repeat Simple_repeat 2 62 0 5031 41 2 0 chr15 67372323 67372913 -18322841 - LTR10C LTR ERV1 0 591 1 444 305 112 13 chr15 67373486 67373719 -18322035 - MIR SINE MIR 0 262 7 577 274 94 55 chr15 67374058 67374420 -18321334 + MLT1I LTR MaLR 1 376 -33 216 0 0 0 chr15 67374514 67374538 -18321216 + (A)n Simple_repeat Simple_repeat 1 24 0 180 179 128 94 chr15 67375000 67375117 -18320637 + MIR3 SINE MIR 2 122 -86 548 259 100 14 chr15 67375429 67375610 -18320144 - MIR SINE MIR -66 196 4 305 276 118 39 chr15 67376785 67376938 -18318816 - MIR SINE MIR -39 223 45 2367 81 0 3 chr15 67376941 67377250 -18318504 - AluY SINE Alu -3 308 1 1656 188 29 81 chr15 67378248 67378731 -18317023 - MLT1C LTR MaLR -9 458 1 385 213 50 0 chr15 67380413 67380493 -18315261 - MER94 DNA DNA -1 133 50 250 203 30 150 chr15 67381509 67381642 -18314112 + MIR SINE MIR 23 139 -69 392 43 0 0 chr15 67383176 67383223 -18312531 + (TG)n Simple_repeat Simple_repeat 1 47 0 479 316 89 36 chr15 67383337 67383584 -18312170 - MIR SINE MIR 0 262 3 455 267 114 23 chr15 67384225 67384401 -18311353 + MIR SINE MIR 66 257 -5 277 318 23 2 chr15 67385022 67385130 -18310624 - MIR SINE MIR -78 130 21 384 241 13 0 chr15 67385614 67385693 -18310061 + MIR SINE MIR 73 152 -110 540 279 113 31 chr15 67385729 67385951 -18309803 - L2 LINE L2 -15 3298 3059 789 202 0 67 chr15 67386281 67386474 -18309280 + MIR SINE MIR 81 260 -2 201 147 0 0 chr15 67387440 67387474 -18308280 + (ATG)n Simple_repeat Simple_repeat 2 35 0 570 263 54 54 chr15 67387474 67387733 -18308021 - MIR SINE MIR 0 262 4 200 111 28 0 chr15 67388177 67388213 -18307541 + (CAT)n Simple_repeat Simple_repeat 1 37 0 188 282 61 92 chr15 67388242 67388405 -18307349 - MIR SINE MIR -48 214 57 252 0 0 0 chr15 67388865 67388893 -18306861 + (TA)n Simple_repeat Simple_repeat 2 29 0 2600 29 3 0 chr15 67389578 67389888 -18305866 + AluY SINE Alu 1 311 0 2140 114 0 3 chr15 67389904 67390212 -18305542 + AluSx SINE Alu 1 307 -5 687 270 59 20 chr15 67390892 67391096 -18304658 + MIR SINE MIR 3 214 -48 192 97 0 0 chr15 67391511 67391542 -18304212 + (ATG)n Simple_repeat Simple_repeat 1 31 0 330 45 0 0 chr15 67391727 67391771 -18303983 + (CA)n Simple_repeat Simple_repeat 1 44 0 1644 166 102 15 chr15 67392399 67392724 -18303030 + MLT1B LTR MaLR 1 353 -37 593 314 45 50 chr15 67392727 67392798 -18302956 - L2 LINE L2 -257 3056 2986 1956 122 30 10 chr15 67392798 67393094 -18302660 + AluSx SINE Alu 1 302 -10 593 314 45 50 chr15 67393094 67393501 -18302253 - L2 LINE L2 -327 2986 2579 296 304 92 7 chr15 67394462 67394609 -18301145 + MIR SINE MIR 3 155 -61 1518 173 102 34 chr15 67394611 67394934 -18300820 - MER2 DNA MER2_type 0 345 1 1087 272 124 18 chr15 67395051 67395445 -18300309 + MLT1J LTR MaLR 70 505 -6 288 282 181 40 chr15 67395769 67395918 -18299836 + MIR SINE MIR 89 258 -4 222 309 72 41 chr15 67396362 67396459 -18299295 + L2 LINE L2 3213 3312 -1 1349 244 83 28 chr15 67396609 67397031 -18298723 + MLT1C LTR MaLR 22 466 -1 327 330 140 6 chr15 67397154 67397333 -18298421 - MIR SINE MIR -55 207 5 238 328 52 26 chr15 67397610 67397726 -18298028 + L2 LINE L2 3153 3271 -1 426 271 211 6 chr15 67400419 67400585 -18295169 + MIR SINE MIR 48 247 -15 1920 127 3 0 chr15 67400840 67401153 -18294601 + AluSx SINE Alu 1 314 0 433 299 81 11 chr15 67404236 67404410 -18291344 - MIR SINE MIR -6 256 71 2169 97 3 3 chr15 67404695 67404994 -18290760 - AluSg SINE Alu -11 299 1 326 273 127 0 chr15 67405616 67405726 -18290028 - MIR SINE MIR -36 226 103 853 225 16 16 chr15 67405807 67405989 -18289765 + MER5A DNA MER1_type 3 184 -5 608 290 16 0 chr15 67406019 67406202 -18289552 + MER5A DNA MER1_type 1 186 -3 209 98 73 0 chr15 67406575 67406616 -18289138 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 310 353 123 12 chr15 67406754 67406924 -18288830 - MIR SINE MIR -7 255 67 803 206 32 0 chr15 67407006 67407161 -18288593 + MER3 DNA MER1_type 50 209 0 358 281 65 39 chr15 67407503 67407656 -18288098 + MIR SINE MIR 73 229 -33 191 35 0 35 chr15 67408291 67408320 -18287434 + (TTG)n Simple_repeat Simple_repeat 3 30 0 520 279 152 12 chr15 67408501 67408666 -18287088 + MIR SINE MIR 56 243 -19 2623 113 3 3 chr15 67408735 67409099 -18286655 - THE1B LTR MaLR 0 364 1 290 284 55 37 chr15 67409212 67409321 -18286433 - L2 LINE L2 -1 3271 3161 1869 133 10 7 chr15 67409502 67409803 -18285951 + AluSx SINE Alu 1 302 -10 702 260 148 65 chr15 67410918 67411065 -18284689 - L2 LINE L2 -50 3263 3130 2074 104 23 13 chr15 67411065 67411374 -18284380 + AluSx SINE Alu 1 312 0 702 260 148 65 chr15 67411374 67411973 -18283781 - L2 LINE L2 -183 3130 2436 1719 271 62 26 chr15 67412504 67413228 -18282526 - L1ME4a LINE L1 -56 6065 5316 2069 74 0 7 chr15 67414716 67414987 -18280767 + AluY SINE Alu 31 299 -12 1348 235 38 5 chr15 67415046 67415376 -18280378 - L1ME3 LINE L1 0 6170 5831 1967 113 3 27 chr15 67415913 67416213 -18279541 - AluSq SINE Alu -20 293 1 438 237 93 95 chr15 67417989 67418368 -18277386 + MLT1H LTR MaLR 102 549 0 192 328 219 0 chr15 67418510 67418638 -18277116 - L2 LINE L2 0 3272 3117 1273 197 48 19 chr15 67418964 67419279 -18276475 + MER33 DNA MER1_type 1 324 0 785 250 6 0 chr15 67419293 67419461 -18276293 + MER5B DNA MER1_type 9 177 -1 237 271 35 24 chr15 67419621 67419706 -18276048 + MIR SINE MIR 59 144 -118 263 213 13 133 chr15 67420372 67420458 -18275296 + L1MA10 LINE L1 6201 6263 -71 1758 148 3 10 chr15 67420458 67420749 -18275005 + AluSx SINE Alu 1 289 -23 263 213 13 133 chr15 67420749 67420812 -18274942 + L1MA10 LINE L1 6263 6332 -2 529 223 10 0 chr15 67420814 67420929 -18274825 + MIR SINE MIR 69 183 -63 219 259 24 24 chr15 67421156 67421241 -18274513 + (TAA)n Simple_repeat Simple_repeat 2 86 0 531 317 33 11 chr15 67421515 67421695 -18274059 + MIR SINE MIR 50 233 -29 263 266 21 21 chr15 67421865 67421959 -18273795 + MIR SINE MIR 32 125 -137 911 272 50 9 chr15 67421965 67422285 -18273469 + L1ME4a LINE L1 5564 5896 -225 1178 256 93 40 chr15 67422432 67423077 -18272677 + L2 LINE L2 2637 3312 -1 228 163 0 0 chr15 67423077 67423120 -18272634 + GA-rich Low_complexity Low_complexity 1 43 0 278 218 0 0 chr15 67423982 67424037 -18271717 + MER117 DNA MER1_type 1 55 -142 377 269 67 34 chr15 67424149 67424298 -18271456 + MER117 DNA MER1_type 39 192 -5 226 167 0 0 chr15 67424280 67424316 -18271438 + MER117 DNA MER1_type 128 163 -34 * 251 175 0 0 chr15 67424325 67424365 -18271389 + MER117 DNA MER1_type 124 163 -34 287 273 15 0 chr15 67424374 67424440 -18271314 + MER117 DNA MER1_type 124 190 -7 231 238 138 0 chr15 67424843 67424923 -18270831 - MER117 DNA MER1_type -104 93 3 1674 208 74 37 chr15 67425254 67425716 -18270038 - MLT1D LTR MaLR 0 505 27 213 65 0 0 chr15 67425748 67425779 -18269975 + (T)n Simple_repeat Simple_repeat 1 31 0 214 271 0 0 chr15 67425978 67426026 -18269728 + GA-rich Low_complexity Low_complexity 4 51 0 269 274 316 12 chr15 67426099 67426267 -18269487 - MIR SINE MIR -10 252 34 261 281 128 37 chr15 67426562 67426726 -18269028 - MIR SINE MIR -58 204 26 2719 22 0 9 chr15 67426876 67427197 -18268557 + AluYb8 SINE Alu 1 318 0 608 227 97 0 chr15 67428463 67428617 -18267137 - L1MD2 LINE L1 -24 6335 6167 1134 278 27 42 chr15 67429239 67429646 -18266108 + LTR16C LTR ERVL 89 489 -2 374 212 0 0 chr15 67429726 67429792 -18265962 + Charlie5 DNA MER1_type 1 66 -2546 739 178 26 0 chr15 67429794 67429946 -18265808 + Charlie5 DNA MER1_type 2430 2585 -27 599 275 99 18 chr15 67430121 67430597 -18265157 + L1ME4a LINE L1 5501 6053 -68 180 292 62 46 chr15 67430875 67430940 -18264814 + L3 LINE CR1 321 386 -1191 490 204 9 9 chr15 67431492 67431600 -18264154 - MER96B DNA MER1_type? -28 389 282 364 209 0 81 chr15 67431618 67431704 -18264050 - MER96B DNA MER1_type? -332 85 7 385 263 91 75 chr15 67432270 67432485 -18263269 + MIR3 SINE MIR 4 218 -44 7700 28 2 0 chr15 67433416 67434717 -18261037 + L1PA4 LINE L1 4850 6152 -3 1483 147 29 11 chr15 67435082 67435354 -18260400 + L1MA4 LINE L1 6024 6300 0 287 260 70 20 chr15 67435696 67435796 -18259958 - MIR SINE MIR -58 204 100 1955 158 51 0 chr15 67435797 67436133 -18259621 + MLT2C1 LTR ERVL 4 356 -41 367 290 35 41 chr15 67438052 67438221 -18257533 - MIR3 SINE MIR -3 205 38 429 333 81 9 chr15 67438467 67438689 -18257065 - MIR SINE MIR -12 250 13 2199 89 3 10 chr15 67439341 67439644 -18256110 + AluSg SINE Alu 1 301 -9 417 274 134 30 chr15 67439675 67439839 -18255915 + L1ME4a LINE L1 5929 6109 -12 1706 182 3 0 chr15 67439852 67440143 -18255611 + AluJo SINE Alu 1 292 -20 389 257 138 20 chr15 67441220 67441372 -18254382 - MIR3 SINE MIR -5 203 34 420 277 162 7 chr15 67441455 67441603 -18254151 + MER5A DNA MER1_type 13 183 -6 187 374 104 0 chr15 67442075 67442238 -18253516 + MIR SINE MIR 69 248 -14 519 325 6 6 chr15 67442360 67442526 -18253228 - MER5B DNA MER1_type -10 168 3 658 324 23 5 chr15 67442598 67442814 -18252940 - MIR SINE MIR -11 251 32 241 280 27 27 chr15 67444410 67444485 -18251269 + MIR SINE MIR 112 186 -76 2425 70 0 13 chr15 67444582 67444896 -18250858 - AluY SINE Alu -1 310 1 2286 107 0 0 chr15 67445998 67446306 -18249448 - AluSx SINE Alu -4 308 1 1303 176 9 5 chr15 67446338 67446559 -18249195 + MER58A DNA MER1_type 3 224 0 345 316 68 15 chr15 67446566 67446699 -18249055 - MER5A DNA MER1_type 0 189 50 248 226 94 9 chr15 67446948 67446965 -18248789 - HAL1b LINE L1 -19 1329 1313 423 278 31 43 chr15 67446965 67447220 -18248534 - L1ME4a LINE L1 -55 6066 1215 340 295 14 14 chr15 67447222 67447361 -18248393 + L1MC4a LINE L1 5801 5939 -1869 587 290 46 70 chr15 67447530 67447875 -18247879 - L1ME4a LINE L1 -277 5844 5508 985 104 0 0 chr15 67448993 67449128 -18246626 + AluSq/x SINE Alu 1 135 -177 375 244 211 51 chr15 67449308 67449464 -18246290 + MER5A DNA MER1_type 9 189 0 343 244 106 67 chr15 67449504 67449684 -18246070 - MER5A DNA MER1_type -2 187 1 493 240 136 0 chr15 67449713 67449867 -18245887 - MER5B DNA MER1_type 0 178 4 451 239 227 0 chr15 67449886 67450049 -18245705 + MIR SINE MIR 53 252 -10 235 184 0 0 chr15 67450016 67450054 -18245700 + L2 LINE L2 3265 3302 -11 * 528 194 236 14 chr15 67450230 67450374 -18245380 + MER45A DNA AcHobo 1 176 -2 538 229 33 0 chr15 67453540 67453662 -18242092 + MIR3 SINE MIR 78 203 -5 259 142 28 3 chr15 67454083 67454135 -18241619 + MIR SINE MIR 95 140 -68 246 160 0 0 chr15 67454891 67454941 -18240813 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 306 216 20 78 chr15 67455253 67455355 -18240399 + L1ME4a LINE L1 5982 6077 -44 22 0 0 0 chr15 67455529 67455551 -18240203 + AT_rich Low_complexity Low_complexity 1 22 0 452 250 52 7 chr15 67455888 67456024 -18239730 - MIR SINE MIR -75 187 46 3274 118 63 7 chr15 67456188 67456771 -18238983 - MER4B LTR ERV1 0 779 1 842 174 0 0 chr15 67457665 67457814 -18237940 - AluJb SINE Alu -7 305 157 573 319 108 4 chr15 67461976 67462208 -18233546 - MIR SINE MIR 0 262 7 3638 212 41 18 chr15 67462237 67462485 -18233269 + L1MC4a LINE L1 6081 6322 -1126 2201 165 13 20 chr15 67462485 67462878 -18232876 + MLT1B LTR MaLR 1 390 0 3638 212 41 18 chr15 67462878 67463750 -18232004 + L1MC4a LINE L1 6322 7448 0 655 188 9 0 chr15 67463758 67463870 -18231884 - MER5A DNA MER1_type -51 138 26 252 86 0 0 chr15 67463942 67463977 -18231777 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 313 329 0 0 chr15 67464760 67464842 -18230912 - MIR SINE MIR -147 115 34 449 311 46 13 chr15 67464959 67465110 -18230644 - MIR SINE MIR 0 262 107 205 324 0 14 chr15 67465185 67465259 -18230495 - MIR SINE MIR -182 80 8 186 155 42 127 chr15 67465557 67465628 -18230126 + L3 LINE CR1 1513 1577 0 401 237 46 8 chr15 67465753 67465884 -18229870 + Charlie5 DNA MER1_type 2450 2585 -27 442 182 182 0 chr15 67465893 67465990 -18229764 - MER58A DNA MER1_type -1 223 109 1713 203 82 32 chr15 67465990 67466463 -18229291 - MLT1D LTR MaLR -2 503 7 353 253 168 0 chr15 67466472 67466567 -18229187 - MER58A DNA MER1_type 0 111 1 267 156 0 0 chr15 67466687 67466732 -18229022 - MER103 DNA DNA -80 86 42 361 337 96 0 chr15 67467553 67467748 -18228006 + MIR SINE MIR 16 236 -26 213 305 17 0 chr15 67467767 67467826 -18227928 - MIR3 SINE MIR -28 180 121 748 229 32 32 chr15 67469227 67469415 -18226339 + MER5A DNA MER1_type 1 188 -1 1416 302 75 40 chr15 67469540 67470236 -18225518 - L2 LINE L2 -365 2949 2230 226 185 185 0 chr15 67470224 67470278 -18225476 + MIR3 SINE MIR 139 202 -6 * 630 277 123 5 chr15 67470328 67470548 -18225206 - MIR SINE MIR -11 251 6 587 311 24 19 chr15 67471451 67471663 -18224091 + MIR SINE MIR 20 232 -30 258 276 82 0 chr15 67472823 67472921 -18222833 - MIR3 SINE MIR -15 193 88 318 297 79 0 chr15 67473406 67473507 -18222247 + MIR SINE MIR 59 167 -95 793 281 5 5 chr15 67473607 67473806 -18221948 - MIR SINE MIR 0 262 64 246 174 0 0 chr15 67473871 67473917 -18221837 + (CA)n Simple_repeat Simple_repeat 1 46 0 427 302 35 23 chr15 67474956 67475128 -18220626 - MIR3 SINE MIR -8 200 27 342 288 120 0 chr15 67476243 67476368 -18219386 + MIR SINE MIR 53 192 -70 593 266 73 6 chr15 67476605 67476782 -18218972 + MIR SINE MIR 4 192 -70 341 303 30 38 chr15 67477616 67477748 -18218006 + MIR SINE MIR 14 144 -118 236 208 101 151 chr15 67478107 67478266 -18217488 + L2 LINE L2 2902 3052 -220 266 269 11 75 chr15 67478883 67478976 -18216778 - MIR SINE MIR -71 191 105 428 311 96 41 chr15 67479952 67480171 -18215583 - MIR SINE MIR -12 250 20 187 395 58 0 chr15 67480243 67480329 -18215425 - L2 LINE L2 -59 3213 3123 209 316 18 0 chr15 67481639 67481696 -18214058 - MIR3 SINE MIR -4 204 147 933 276 69 4 chr15 67482175 67482407 -18213347 + MIR SINE MIR 6 252 -10 211 252 39 97 chr15 67482576 67482679 -18213075 - MIR SINE MIR -82 180 84 609 280 15 25 chr15 67483543 67483743 -18212011 - MLT1I LTR MaLR -67 342 145 225 119 0 0 chr15 67483753 67483795 -18211959 + (GA)n Simple_repeat Simple_repeat 2 43 0 358 126 39 87 chr15 67483805 67483908 -18211846 - L1MB8 LINE L1 -37 6141 6044 836 263 89 5 chr15 67484046 67484270 -18211484 - MIR SINE MIR -7 255 13 2397 106 0 0 chr15 67484513 67484814 -18210940 - AluSc SINE Alu -8 301 1 206 382 45 0 chr15 67484949 67485059 -18210695 + MIR3 SINE MIR 45 159 -49 408 279 93 60 chr15 67485069 67485252 -18210502 - L2 LINE L2 -7 3306 3118 365 329 0 45 chr15 67486478 67486633 -18209121 - MIR SINE MIR -48 214 67 302 301 49 35 chr15 67487213 67487356 -18208398 + MER5A DNA MER1_type 18 162 -27 * 519 288 41 7 chr15 67487247 67487393 -18208361 - MER5A DNA MER1_type -37 152 2 2478 87 0 0 chr15 67488063 67488362 -18207392 + AluSc SINE Alu 1 299 -10 736 211 122 88 chr15 67488371 67488414 -18207340 + L2 LINE L2 2673 2713 -601 2335 79 0 23 chr15 67488414 67488718 -18207036 + AluY SINE Alu 1 297 -14 736 211 122 88 chr15 67488718 67488968 -18206786 + L2 LINE L2 2713 2976 -338 557 211 55 55 chr15 67488987 67489186 -18206568 + L2 LINE L2 3079 3277 -36 413 312 48 0 chr15 67489308 67489433 -18206321 - L2 LINE L2 -1 3271 3141 196 398 10 10 chr15 67489996 67490099 -18205655 - MIR SINE MIR -139 123 21 208 277 84 24 chr15 67490107 67490190 -18205564 - L2 LINE L2 -29 3243 3156 517 328 36 26 chr15 67490572 67490764 -18204990 + MER91A DNA MER1_type 1 194 -2 638 168 22 22 chr15 67490768 67490905 -18204849 - Charlie1 DNA MER1_type -3 2758 2622 * 1073 213 13 4 chr15 67490901 67491126 -18204628 - Charlie1 DNA MER1_type -2534 227 1 1438 219 47 54 chr15 67493047 67493231 -18202523 + MLT1C LTR MaLR 6 190 -277 2135 128 6 26 chr15 67493231 67493543 -18202211 + AluSx SINE Alu 6 311 -1 1438 219 47 54 chr15 67493543 67493823 -18201931 + MLT1C LTR MaLR 190 467 0 202 279 36 54 chr15 67493823 67493934 -18201820 + MIR SINE MIR 95 203 -59 430 329 24 12 chr15 67494917 67495081 -18200673 + MIR SINE MIR 59 224 -38 546 264 28 71 chr15 67496233 67496445 -18199309 + MIR SINE MIR 53 255 -7 534 283 53 45 chr15 67497080 67497327 -18198427 + MIR SINE MIR 13 261 -1 444 37 0 0 chr15 67497796 67497850 -18197904 + (TTC)n Simple_repeat Simple_repeat 1 54 0 981 280 212 22 chr15 67498742 67499407 -18196347 - L2 LINE L2 -259 3054 2248 1876 179 31 21 chr15 67502262 67502314 -18193440 + MLT1B LTR MaLR 1 51 -339 2333 105 3 10 chr15 67502314 67502628 -18193126 + AluSq SINE Alu 1 312 -1 1876 179 31 21 chr15 67502628 67502961 -18192793 + MLT1B LTR MaLR 51 390 0 307 295 102 20 chr15 67503609 67503790 -18191964 + MIR SINE MIR 16 216 -46 335 267 17 43 chr15 67504377 67504493 -18191261 - MIR SINE MIR -19 243 131 322 329 101 2 chr15 67505909 67506132 -18189622 + Charlie8 DNA MER1_type 8 239 -2178 207 200 0 0 chr15 67506519 67506554 -18189200 - L2 LINE L2 -12 3301 3267 200 205 0 0 chr15 67506633 67506672 -18189082 + CT-rich Low_complexity Low_complexity 1 39 0 183 284 75 15 chr15 67507173 67507240 -18188514 + MIR SINE MIR 62 132 -76 294 338 62 14 chr15 67507512 67507657 -18188097 - MIR3 SINE MIR -27 181 30 353 308 54 24 chr15 67508627 67508806 -18186948 + MIR SINE MIR 16 197 -57 327 276 0 13 chr15 67509301 67509377 -18186377 + MIR3 SINE MIR 86 160 -48 1185 197 159 0 chr15 67510873 67511137 -18184617 + MER58B DNA MER1_type 36 341 0 655 264 29 24 chr15 67511142 67511350 -18184404 + MIR SINE MIR 35 243 -19 1989 123 0 0 chr15 67511976 67512244 -18183510 + AluSx SINE Alu 36 303 -9 1202 203 9 0 chr15 67512595 67512812 -18182942 + MER20 DNA MER1_type 1 219 0 181 300 0 0 chr15 67513946 67513996 -18181758 - L2 LINE L2 -3 3269 3220 2495 41 6 28 chr15 67515237 67515554 -18180200 + AluY SINE Alu 1 310 -1 2734 33 0 0 chr15 67515556 67515861 -18179893 + AluY SINE Alu 1 305 -6 516 192 143 28 chr15 67517625 67517783 -18177971 - MER5A DNA MER1_type -7 182 4 189 164 16 82 chr15 67517788 67517849 -18177905 + L2 LINE L2 3211 3267 -5 635 259 35 7 chr15 67517925 67518068 -18177686 - MER5B DNA MER1_type 0 178 32 224 322 89 68 chr15 67518087 67518233 -18177521 - L2 LINE L2 -8 3264 3116 988 253 144 26 chr15 67518613 67519079 -18176675 - LTR33A LTR ERVL -2 521 1 401 0 20 0 chr15 67519369 67519418 -18176336 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 656 219 25 1 chr15 67519418 67519579 -18176175 - MER33 DNA MER1_type -250 74 1 242 123 53 18 chr15 67520800 67520857 -18174897 + (CA)n Simple_repeat Simple_repeat 1 59 0 265 284 18 18 chr15 67521369 67521478 -18174276 - MIR SINE MIR -70 138 30 675 331 20 4 chr15 67521541 67521786 -18173968 + MIR SINE MIR 3 251 -11 723 179 125 6 chr15 67522943 67523111 -18172643 - MER5A DNA MER1_type -1 188 1 459 0 0 0 chr15 67523514 67523565 -18172189 + (CA)n Simple_repeat Simple_repeat 2 52 0 666 299 0 26 chr15 67524452 67524646 -18171108 + MIR SINE MIR 62 250 -12 648 298 30 53 chr15 67524684 67524946 -18170808 - MIR SINE MIR 0 262 7 356 316 67 42 chr15 67525762 67525955 -18169799 + MIR SINE MIR 65 262 0 363 322 45 79 chr15 67526926 67527218 -18168536 + L2 LINE L2 2985 3266 -6 348 271 42 34 chr15 67527327 67527445 -18168309 - MER94 DNA DNA -3 131 13 228 222 79 0 chr15 67527445 67527508 -18168246 - L2 LINE L2 -21 3292 3225 188 309 48 24 chr15 67527578 67527662 -18168092 - L2 LINE L2 -2 3270 3185 463 320 36 53 chr15 67529151 67529398 -18166356 - MIR SINE MIR 0 262 20 186 43 0 0 chr15 67529427 67529450 -18166304 + (TG)n Simple_repeat Simple_repeat 1 23 0 417 231 34 7 chr15 67530294 67530424 -18165330 + MIR SINE MIR 20 157 -51 381 253 101 93 chr15 67530960 67531217 -18164537 + MIR SINE MIR 2 260 -2 361 336 137 26 chr15 67531472 67531698 -18164056 - MIR SINE MIR -8 254 4 303 287 55 55 chr15 67532492 67532694 -18163060 - L2 LINE L2 -273 3040 2839 1884 76 17 8 chr15 67533151 67533387 -18162367 - AluSx SINE Alu -64 248 11 414 0 0 0 chr15 67534817 67534863 -18160891 + (TG)n Simple_repeat Simple_repeat 2 47 0 1581 144 30 0 chr15 67534864 67535100 -18160654 - AluSx SINE Alu -28 284 42 673 287 125 46 chr15 67536106 67536718 -18159036 + L2 LINE L2 2588 3257 -56 1826 318 152 15 chr15 67537358 67538526 -18157228 + L2 LINE L2 1566 2893 -421 308 203 0 0 chr15 67538570 67538629 -18157125 + L2 LINE L2 3008 3066 -247 896 168 59 40 chr15 67538671 67538873 -18156881 + MER20 DNA MER1_type 9 214 -5 450 297 32 38 chr15 67538897 67539082 -18156672 + L2 LINE L2 3127 3310 -3 275 286 11 115 chr15 67540647 67540829 -18154925 + MER117 DNA MER1_type 1 163 -34 443 287 134 11 chr15 67541537 67541751 -18154003 + MIR SINE MIR 19 256 -6 184 322 0 0 chr15 67542545 67542604 -18153150 + L2 LINE L2 3000 3058 -214 349 310 93 0 chr15 67542982 67543111 -18152643 + L2 LINE L2 3129 3269 -3 2750 86 5 0 chr15 67544065 67544438 -18151316 + THE1C LTR MaLR 1 375 0 669 229 179 16 chr15 67546600 67546952 -18148802 + LTR16C LTR ERVL 4 491 0 309 291 135 14 chr15 67547068 67547216 -18148538 - MIR SINE MIR -18 244 79 1402 170 3 0 chr15 67547216 67547498 -18148256 + L1MA4 LINE L1 6015 6297 -3 2084 90 0 0 chr15 67547523 67547812 -18147942 - L1PA8 LINE L1 -4 6168 5880 2351 178 64 26 chr15 67548817 67549345 -18146409 - L1MB5 LINE L1 0 6174 5627 2590 59 0 7 chr15 67549894 67550200 -18145554 + AluY SINE Alu 1 304 -7 540 0 0 0 chr15 67550508 67550568 -18145186 + (CA)n Simple_repeat Simple_repeat 1 60 0 344 328 8 8 chr15 67550971 67551099 -18144655 - MIR SINE MIR -63 199 72 234 0 0 0 chr15 67551303 67551329 -18144425 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 828 263 58 21 chr15 67551401 67551605 -18144149 - MIR SINE MIR 0 262 46 2298 121 3 0 chr15 67551605 67551912 -18143842 + AluSx SINE Alu 1 308 -4 828 263 58 21 chr15 67551912 67551950 -18143804 - MIR SINE MIR -216 46 11 1774 229 52 7 chr15 67551952 67552393 -18143361 - MLT1C LTR MaLR -6 461 1 240 226 0 0 chr15 67552455 67552508 -18143246 + A-rich Low_complexity Low_complexity 1 53 0 333 353 60 7 chr15 67552590 67552740 -18143014 + L2 LINE L2 3095 3252 -20 192 255 0 39 chr15 67552805 67552856 -18142898 - MIR SINE MIR -72 136 88 261 258 0 30 chr15 67553736 67553802 -18141952 - MIR SINE MIR -198 64 1 3934 179 45 10 chr15 67554785 67555572 -18140182 + L1MB2 LINE L1 5349 6162 -9 1670 68 0 10 chr15 67555572 67555777 -18139977 - AluY SINE Alu -18 293 91 419 248 38 100 chr15 67556130 67556340 -18139414 + MIR SINE MIR 15 211 -51 447 306 70 0 chr15 67557552 67557751 -18138003 - MIR SINE MIR -2 260 48 227 79 26 0 chr15 67557911 67557949 -18137805 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 344 277 147 4 chr15 67558215 67558431 -18137323 + MIR SINE MIR 12 254 -8 453 284 17 16 chr15 67558693 67558859 -18136895 + MER5A DNA MER1_type 8 185 -4 393 281 198 8 chr15 67558933 67559175 -18136579 - L1ME4a LINE L1 -1 6120 5833 903 114 8 23 chr15 67559318 67559449 -18136305 + AluJb SINE Alu 2 130 -182 185 108 27 0 chr15 67559454 67559491 -18136263 + A-rich Low_complexity Low_complexity 2 39 0 645 246 60 12 chr15 67560081 67560248 -18135506 - MIR SINE MIR -72 190 16 277 256 85 0 chr15 67560367 67560449 -18135305 - MIR SINE MIR -84 178 90 369 291 58 0 chr15 67560596 67560718 -18135036 - MIR SINE MIR -72 136 57 429 302 15 50 chr15 67561390 67561583 -18134171 + MIR SINE MIR 39 227 -35 348 293 56 51 chr15 67562217 67562432 -18133322 + MIR SINE MIR 30 245 -17 474 299 49 6 chr15 67563831 67563995 -18131759 + MIR3 SINE MIR 16 186 -22 516 232 71 26 chr15 67564565 67564720 -18131034 - MIR SINE MIR 0 262 101 1979 157 5 89 chr15 67565094 67565520 -18130234 + MLT1B LTR MaLR 1 390 0 208 356 130 11 chr15 67565719 67565989 -18129765 + L2 LINE L2 2130 2431 -883 332 284 138 65 chr15 67566626 67567024 -18128730 + MLT1J LTR MaLR 82 508 -3 222 344 155 9 chr15 67567024 67567174 -18128580 - MIR SINE MIR -58 204 37 450 275 35 14 chr15 67567873 67568015 -18127739 + MIR SINE MIR 74 218 -44 25 65 0 0 chr15 67568369 67568415 -18127339 + AT_rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr15 67569276 67569299 -18126455 + (CA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr15 67570066 67570086 -18125668 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 255 269 0 0 chr15 67570243 67570310 -18125444 + (GATTG)n Simple_repeat Simple_repeat 1 67 0 265 264 11 22 chr15 67571496 67571587 -18124167 + CT-rich Low_complexity Low_complexity 5 94 0 293 304 71 36 chr15 67572239 67572463 -18123291 + L2 LINE L2 2851 3082 -190 443 308 61 51 chr15 67572528 67573070 -18122684 + L2 LINE L2 2708 3253 -60 380 301 0 0 chr15 67573643 67573736 -18122018 + MIR SINE MIR 56 148 -114 1558 201 94 0 chr15 67573804 67574198 -18121556 + L1ME2 LINE L1 5545 5975 -189 852 129 0 43 chr15 67574198 67574337 -18121417 + FLAM_C SINE Alu 1 133 0 652 163 163 45 chr15 67574382 67574584 -18121170 + L1PB3 LINE L1 5929 6154 0 622 211 38 49 chr15 67574648 67574833 -18120921 + L1ME2 LINE L1 5972 6154 -10 395 270 46 116 chr15 67574837 67575096 -18120658 + L1MC4 LINE L1 7801 8041 -1 2432 114 5 13 chr15 67575697 67576074 -18119680 + MLT1B LTR MaLR 15 388 -2 227 298 41 69 chr15 67576453 67576671 -18119083 - L1M3 LINE L1 -266 5902 5691 547 284 83 20 chr15 67576672 67576876 -18118878 + MIR SINE MIR 25 241 -21 531 172 43 9 chr15 67577692 67577808 -18117946 + MER5A DNA MER1_type 65 184 -5 304 57 0 38 chr15 67577829 67577882 -18117872 + (CA)n Simple_repeat Simple_repeat 2 52 0 488 283 14 7 chr15 67578017 67578162 -18117592 - MIR3 SINE MIR -4 204 59 574 265 30 18 chr15 67578412 67578578 -18117176 + MIR SINE MIR 48 215 -47 227 281 163 7 chr15 67578816 67578951 -18116803 - L2 LINE L2 -7 3306 3151 403 165 31 10 chr15 67579921 67580018 -18115736 + LTR16C LTR ERVL 360 458 -33 244 321 36 36 chr15 67580328 67580465 -18115289 + L2 LINE L2 3109 3245 -27 369 0 0 0 chr15 67581344 67581385 -18114369 + (CA)n Simple_repeat Simple_repeat 1 41 0 333 314 9 0 chr15 67581425 67581530 -18114224 - MIR3 SINE MIR -25 183 78 199 304 165 19 chr15 67582754 67582912 -18112842 - MIR3 SINE MIR -18 190 10 226 277 15 0 chr15 67584809 67584874 -18110880 + MIR SINE MIR 82 147 -115 195 129 0 0 chr15 67586888 67586919 -18108835 + (CCG)n Simple_repeat Simple_repeat 2 32 0 25 90 0 0 chr15 67587193 67587260 -18108494 + GC_rich Low_complexity Low_complexity 1 67 0 351 250 10 20 chr15 67587592 67587692 -18108062 + G-rich Low_complexity Low_complexity 6 104 0 234 0 0 0 chr15 67587756 67587782 -18107972 + (CCG)n Simple_repeat Simple_repeat 1 26 0 213 173 39 0 chr15 67588007 67588059 -18107695 + (CA)n Simple_repeat Simple_repeat 2 55 0 288 77 0 0 chr15 67588200 67588239 -18107515 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr15 67588252 67588273 -18107481 + GC_rich Low_complexity Low_complexity 1 21 0 218 207 0 35 chr15 67588296 67588354 -18107400 + C-rich Low_complexity Low_complexity 1 56 0 192 77 0 0 chr15 67588354 67588380 -18107374 + (CCCA)n Simple_repeat Simple_repeat 1 26 0 309 51 0 0 chr15 67590215 67590254 -18105500 + (GA)n Simple_repeat Simple_repeat 1 39 0 1489 100 23 14 chr15 67590512 67590732 -18105022 + L1PA12 LINE L1 5947 6168 0 217 243 10 14 chr15 67590774 67590847 -18104907 + MIR3 SINE MIR 86 160 -48 443 245 0 0 chr15 67590855 67590953 -18104801 + MER5A DNA MER1_type 9 106 -83 453 300 136 34 chr15 67592616 67592939 -18102815 - L3 LINE CR1 -114 1463 1108 417 250 189 0 chr15 67593046 67593194 -18102560 + MIR SINE MIR 63 238 -24 358 322 35 0 chr15 67594257 67594372 -18101382 + L2 LINE L2 3192 3310 -3 230 310 28 42 chr15 67594427 67594569 -18101185 + L2 LINE L2 3174 3313 0 214 276 0 26 chr15 67595176 67595252 -18100502 + MIR SINE MIR 80 153 -109 353 301 36 14 chr15 67595514 67595704 -18100050 + MIR SINE MIR 41 233 -29 473 225 168 42 chr15 67596925 67597116 -18098638 - MIR SINE MIR -1 261 47 240 322 119 56 chr15 67598600 67598743 -18097011 - MIR3 SINE MIR -47 161 10 1237 68 11 6 chr15 67598750 67598927 -18096827 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 264 154 0 0 chr15 67598928 67598980 -18096774 + GA-rich Low_complexity Low_complexity 4 55 0 1154 99 0 6 chr15 67598981 67599162 -18096592 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2297 109 0 0 chr15 67600182 67600494 -18095260 - AluSx SINE Alu 0 312 1 227 226 65 0 chr15 67600540 67600602 -18095152 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 265 311 0 11 chr15 67600679 67600769 -18094985 + MIR3 SINE MIR 114 202 -6 294 300 108 23 chr15 67601551 67601681 -18094073 - MIR SINE MIR -107 155 15 498 248 9 0 chr15 67603330 67603443 -18092311 - MER81 DNA DNA 0 114 1 259 191 0 0 chr15 67603857 67603904 -18091850 - MIR SINE MIR -84 124 78 284 293 53 23 chr15 67604370 67604503 -18091251 - L3 LINE CR1 -344 1233 1097 426 283 249 14 chr15 67604614 67604960 -18090794 - L3 LINE CR1 -474 1103 677 180 333 0 0 chr15 67605337 67605382 -18090372 + L2 LINE L2 3223 3267 -5 459 243 103 22 chr15 67605587 67605723 -18090031 - L2 LINE L2 0 3272 3126 495 247 152 0 chr15 67607062 67607220 -18088534 + MIR SINE MIR 76 257 -5 917 165 6 0 chr15 67607715 67607873 -18087881 - MER5A DNA MER1_type -1 188 30 772 228 6 28 chr15 67607882 67608062 -18087692 - MER3 DNA MER1_type -80 129 1 272 269 34 34 chr15 67609162 67609281 -18086473 + CT-rich Low_complexity Low_complexity 3 121 0 1099 190 13 44 chr15 67610002 67610228 -18085526 - MER20 DNA MER1_type 0 219 1 523 196 47 0 chr15 67611016 67611123 -18084631 + MLT1G3 LTR MaLR 1 112 -483 1356 229 167 21 chr15 67611123 67611512 -18084242 + MLT1G3 LTR MaLR 85 530 0 1802 169 33 9 chr15 67611935 67612267 -18083487 - L1MB8 LINE L1 -1 6177 5838 275 333 20 10 chr15 67614843 67614942 -18080812 + MIR3 SINE MIR 97 196 -12 205 286 0 0 chr15 67616595 67616637 -18079117 - L2 LINE L2 -17 3255 3214 320 289 0 6 chr15 67617103 67617262 -18078492 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 236 259 12 0 chr15 67617315 67617396 -18078358 + (CCCA)n Simple_repeat Simple_repeat 3 84 0 344 360 0 7 chr15 67617399 67617538 -18078216 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 182 208 19 0 chr15 67617572 67617625 -18078129 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 261 333 62 117 chr15 67617662 67618025 -18077729 - L2 LINE L2 -19 3253 2920 771 131 331 0 chr15 67618025 67618185 -18077569 + MER20 DNA MER1_type 3 215 -4 261 333 62 117 chr15 67618185 67618292 -18077462 - L2 LINE L2 -352 2920 2809 482 235 77 82 chr15 67618431 67618470 -18077284 - MIR SINE MIR -17 245 207 1709 170 0 34 chr15 67618470 67618764 -18076990 - AluJb SINE Alu -17 295 12 482 235 77 82 chr15 67618764 67618907 -18076847 - MIR SINE MIR -55 207 64 255 244 0 0 chr15 67619581 67619659 -18076095 + (CA)n Simple_repeat Simple_repeat 1 78 0 383 286 6 0 chr15 67619671 67619849 -18075905 + (CA)n Simple_repeat Simple_repeat 1 179 0 546 16 0 0 chr15 67620722 67620785 -18074969 + (TG)n Simple_repeat Simple_repeat 1 63 0 267 286 0 0 chr15 67621276 67621339 -18074415 + L2 LINE L2 3251 3313 0 * 418 360 23 11 chr15 67621337 67621512 -18074242 - MIR SINE MIR -61 201 25 960 233 137 74 chr15 67622930 67623457 -18072297 + MLT1K LTR MaLR 19 578 -10 180 0 0 0 chr15 67623959 67623979 -18071775 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 754 126 55 0 chr15 67624164 67624291 -18071463 - L1MB3 LINE L1 0 6183 6050 1531 144 40 4 chr15 67624322 67624599 -18071155 - L1MB3 LINE L1 -51 6132 5846 1956 136 73 0 chr15 67625692 67625979 -18069775 - AluSg SINE Alu 0 310 3 213 337 48 12 chr15 67626313 67626396 -18069358 + MIR SINE MIR 160 245 -17 216 216 0 0 chr15 67626400 67626451 -18069303 + CT-rich Low_complexity Low_complexity 3 53 0 201 39 0 0 chr15 67627221 67627247 -18068507 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 297 0 0 0 chr15 67627633 67627666 -18068088 + (CA)n Simple_repeat Simple_repeat 2 34 0 332 320 0 10 chr15 67628159 67628259 -18067495 - MER117 DNA MER1_type -2 195 97 1524 175 86 59 chr15 67628737 67629006 -18066748 - MLT1B LTR MaLR -9 381 98 2308 35 0 0 chr15 67629006 67629262 -18066492 - AluY SINE Alu -17 294 39 1524 175 86 59 chr15 67629262 67629363 -18066391 - MLT1B LTR MaLR -292 98 1 224 254 109 55 chr15 67629370 67629480 -18066274 - L3 LINE CR1 -1 1576 1461 1337 183 35 14 chr15 67629586 67629870 -18065884 + MLT1D LTR MaLR 216 505 0 246 208 38 0 chr15 67630053 67630106 -18065648 + L2 LINE L2 3239 3293 -20 2350 109 6 3 chr15 67630354 67630666 -18065088 - AluSq SINE Alu 0 313 1 217 350 58 25 chr15 67631655 67631775 -18063979 + L2 LINE L2 3138 3261 -11 439 299 10 60 chr15 67631819 67632020 -18063734 - MIR SINE MIR -24 238 48 459 238 111 32 chr15 67632117 67632243 -18063511 - MIR SINE MIR -73 189 54 206 176 20 0 chr15 67633565 67633616 -18062138 + (CA)n Simple_repeat Simple_repeat 1 52 0 324 302 108 27 chr15 67633629 67634079 -18061675 + L2 LINE L2 2566 3056 -216 415 234 98 73 chr15 67634956 67635161 -18060593 + MLT1J1 LTR MaLR 2 211 -235 248 103 103 0 chr15 67635254 67635293 -18060461 + Charlie5 DNA MER1_type 1 43 -2569 * 697 183 160 17 chr15 67635259 67635332 -18060422 - MER3 DNA MER1_type -9 200 139 2235 111 6 19 chr15 67635332 67635648 -18060106 + AluSp SINE Alu 1 312 -1 697 183 160 17 chr15 67635648 67635749 -18060005 - MER3 DNA MER1_type -70 139 1 273 202 42 25 chr15 67636130 67636249 -18059505 + MER113 DNA MER1_type? 47 167 -354 * 955 194 36 129 chr15 67636245 67636601 -18059153 - MLT2D LTR ERVL -87 327 5 891 233 55 16 chr15 67636596 67636849 -18058905 + MER113 DNA MER1_type? 170 432 -89 * 181 139 47 0 chr15 67637335 67637378 -18058376 + GA-rich Low_complexity Low_complexity 2 46 0 208 374 46 23 chr15 67637861 67637992 -18057762 + L2 LINE L2 3136 3269 -3 256 227 23 0 chr15 67638061 67638149 -18057605 + L1MC4 LINE L1 6614 6703 -1339 207 231 0 0 chr15 67638150 67638189 -18057565 + (TA)n Simple_repeat Simple_repeat 1 39 0 238 292 0 0 chr15 67638190 67638279 -18057475 + L1MC4 LINE L1 6615 6703 -1339 350 436 17 0 chr15 67638536 67638715 -18057039 + MER5A DNA MER1_type 1 182 -7 665 189 182 0 chr15 67639410 67639569 -18056185 - MER5A DNA MER1_type 0 189 2 468 305 152 10 chr15 67639770 67639976 -18055778 + MIR SINE MIR 31 262 0 443 294 132 0 chr15 67640250 67640447 -18055307 - MIR SINE MIR -6 256 34 2376 84 0 13 chr15 67640462 67640772 -18054982 - AluY SINE Alu -5 306 1 253 231 49 26 chr15 67641554 67641665 -18054089 + MIR SINE MIR 19 132 -76 799 271 95 17 chr15 67642381 67642728 -18053026 - MLT1L LTR MaLR -5 610 237 210 113 38 19 chr15 67643955 67644008 -18051746 + (TG)n Simple_repeat Simple_repeat 2 55 0 245 295 0 0 chr15 67644330 67644391 -18051363 - MIR SINE MIR -148 114 54 2537 80 47 39 chr15 67645941 67646302 -18049452 - THE1B LTR MaLR 0 364 1 371 282 51 64 chr15 67646546 67646780 -18048974 + L2 LINE L2 1631 1861 -1453 1146 330 7 10 chr15 67647081 67647499 -18048255 + L2 LINE L2 1860 2276 -1038 350 228 0 33 chr15 67647524 67647616 -18048138 + L1ME1 LINE L1 5217 5305 -841 1252 140 0 0 chr15 67647639 67647817 -18047937 - AluSg/x SINE Alu 0 312 135 3104 212 81 27 chr15 67647819 67648510 -18047244 + L1ME1 LINE L1 5305 6054 -130 757 207 58 35 chr15 67648510 67648684 -18047070 - MER45A DNA AcHobo 0 178 1 3104 212 81 27 chr15 67648684 67648822 -18046932 + L1ME1 LINE L1 6054 6183 -1 507 253 82 106 chr15 67648895 67649274 -18046480 + L1MC4 LINE L1 7535 7995 0 261 277 125 18 chr15 67649723 67649835 -18045919 + L2 LINE L2 3180 3303 -10 429 271 129 39 chr15 67650226 67650481 -18045273 - MER115 DNA AcHobo -206 487 210 673 154 34 0 chr15 67650538 67650655 -18045099 + AluJb SINE Alu 166 286 -26 214 254 0 172 chr15 67650898 67651067 -18044687 - MIR3 SINE MIR -21 187 48 298 284 30 52 chr15 67651281 67651415 -18044339 + MIR SINE MIR 125 255 -7 419 231 34 170 chr15 67651672 67651996 -18043758 - L1 LINE L1 -2946 3200 2918 260 267 144 45 chr15 67652072 67652274 -18043480 + L2 LINE L2 2551 2772 -542 662 262 52 0 chr15 67653108 67653177 -18042577 - MER5A DNA MER1_type 0 189 125 2149 108 0 21 chr15 67653177 67653464 -18042290 + AluSx SINE Alu 12 292 -20 662 262 52 0 chr15 67653464 67653566 -18042188 - MER5A DNA MER1_type -64 125 9 577 164 192 79 chr15 67653626 67653659 -18042095 + MER3 DNA MER1_type 13 41 -168 1880 171 0 29 chr15 67653659 67653975 -18041779 + AluJo SINE Alu 3 309 -3 577 164 192 79 chr15 67653975 67654118 -18041636 + MER3 DNA MER1_type 41 209 0 658 264 142 5 chr15 67654469 67654681 -18041073 - MIR SINE MIR -15 247 7 380 320 54 20 chr15 67655479 67655626 -18040128 - L2 LINE L2 0 3272 3121 451 133 27 0 chr15 67655859 67655934 -18039820 + MER20 DNA MER1_type 1 77 -142 242 259 5 81 chr15 67656354 67656539 -18039215 + C-rich Low_complexity Low_complexity 1 171 0 39 70 0 0 chr15 67659200 67659257 -18036497 + GC_rich Low_complexity Low_complexity 1 57 0 324 368 17 11 chr15 67659371 67659545 -18036209 + CT-rich Low_complexity Low_complexity 1 175 0 200 192 0 61 chr15 67659886 67659985 -18035769 + CT-rich Low_complexity Low_complexity 1 93 0 393 312 11 51 chr15 67660001 67660289 -18035465 + CT-rich Low_complexity Low_complexity 1 276 0 * 395 325 18 18 chr15 67660215 67660384 -18035370 + C-rich Low_complexity Low_complexity 3 171 0 21 0 0 0 chr15 67660654 67660675 -18035079 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 67660715 67660738 -18035016 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 67660949 67660971 -18034783 + GC_rich Low_complexity Low_complexity 1 22 0 220 282 0 13 chr15 67662298 67662376 -18033378 + T-rich Low_complexity Low_complexity 4 80 0 203 326 20 0 chr15 67662717 67662815 -18032939 + CT-rich Low_complexity Low_complexity 3 102 0 239 358 11 0 chr15 67663035 67663130 -18032624 + C-rich Low_complexity Low_complexity 5 100 0 229 203 0 17 chr15 67664760 67664819 -18030935 + C-rich Low_complexity Low_complexity 6 63 0 340 225 35 23 chr15 67666621 67666794 -18028960 + A-rich Low_complexity Low_complexity 5 179 0 240 215 45 40 chr15 67667076 67667253 -18028501 + (CACAA)n Simple_repeat Simple_repeat 3 180 0 223 239 14 28 chr15 67668589 67668660 -18027094 + C-rich Low_complexity Low_complexity 5 74 0 224 261 34 23 chr15 67673295 67673471 -18022283 + (CACAC)n Simple_repeat Simple_repeat 3 180 0 295 326 55 51 chr15 67676258 67676531 -18019223 - L3 LINE CR1 -58 1519 1246 1105 166 64 0 chr15 67676568 67676755 -18018999 + MER58A DNA MER1_type 26 224 0 2002 99 16 88 chr15 67676763 67677126 -18018628 - MER1B DNA MER1_type 0 337 1 311 313 114 45 chr15 67677163 67677409 -18018345 - L3 LINE CR1 -377 1200 938 703 283 58 27 chr15 67677448 67677671 -18018083 - MIR SINE MIR -5 257 28 1586 245 61 48 chr15 67677783 67677960 -18017794 - L2 LINE L2 -3 3310 3137 1715 152 50 0 chr15 67677960 67678257 -18017497 + AluSx SINE Alu 1 312 0 1586 245 61 48 chr15 67678257 67678989 -18016765 - L2 LINE L2 -176 3137 2427 592 115 11 0 chr15 67679049 67679136 -18016618 - L1PA14 LINE L1 -216 5945 5858 187 171 29 0 chr15 67679210 67679245 -18016509 - L2 LINE L2 -1 3271 3236 180 0 0 0 chr15 67680523 67680543 -18015211 + (TCTCTG)n Simple_repeat Simple_repeat 3 22 0 533 284 10 33 chr15 67680559 67680774 -18014980 - L1ME4a LINE L1 -201 5920 5710 355 330 85 0 chr15 67681191 67681367 -18014387 + MIR SINE MIR 28 218 -44 289 309 101 10 chr15 67682797 67682945 -18012809 + MIR SINE MIR 40 196 -62 2237 119 0 0 chr15 67682996 67683307 -18012447 + AluSx SINE Alu 1 311 -1 629 279 15 79 chr15 67684455 67684720 -18011034 - MIR SINE MIR -2 260 13 413 270 19 84 chr15 67684922 67685137 -18010617 - L2 LINE L2 -177 3095 2895 1171 156 10 15 chr15 67685215 67685420 -18010334 + MER20 DNA MER1_type 16 219 0 189 382 32 16 chr15 67685449 67685635 -18010119 - L2 LINE L2 -188 3084 2896 2251 107 0 3 chr15 67685748 67686058 -18009696 + AluSc SINE Alu 1 309 0 374 276 62 42 chr15 67686068 67686260 -18009494 - L2 LINE L2 -550 2764 2569 193 189 0 0 chr15 67686278 67686315 -18009439 - MIR SINE MIR -17 245 209 22 56 0 0 chr15 67686388 67686424 -18009330 + AT_rich Low_complexity Low_complexity 1 36 0 188 189 27 0 chr15 67686660 67686697 -18009057 + L2 LINE L2 3268 3305 -8 2236 103 3 0 chr15 67686698 67687008 -18008746 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr15 67687008 67687031 -18008723 + (TA)n Simple_repeat Simple_repeat 1 23 0 271 221 159 44 chr15 67687382 67687495 -18008259 - MLT1J2 LTR MaLR -15 435 310 * 624 265 69 48 chr15 67687478 67687769 -18007985 - MLT1H LTR MaLR -242 307 11 221 276 53 71 chr15 67688032 67688202 -18007552 + L2 LINE L2 1950 2116 -1198 2053 186 21 7 chr15 67688227 67688662 -18007092 + L1MA4 LINE L1 5857 6297 -3 2206 173 8 0 chr15 67689062 67689443 -18006311 - L1MA4 LINE L1 -419 5881 5498 887 249 113 61 chr15 67689567 67689702 -18006052 + L1ME4a LINE L1 5511 5638 -483 1734 166 23 0 chr15 67689702 67690004 -18005750 - AluJb SINE Alu -1 311 3 1370 111 28 0 chr15 67690014 67690230 -18005524 - L1MA5 LINE L1 -2 6298 6077 2887 133 63 26 chr15 67690232 67690727 -18005027 + MLT2B2 LTR ERVL 3 515 0 887 249 113 61 chr15 67690727 67691155 -18004599 + L1ME4a LINE L1 5646 6118 -3 403 301 41 8 chr15 67691542 67691665 -18004089 + MER91A DNA MER1_type 19 145 -51 1472 167 0 19 chr15 67691694 67691951 -18003803 - AluJo SINE Alu -24 288 37 202 195 115 177 chr15 67691987 67692100 -18003654 + MER91A DNA MER1_type 90 195 -1 555 235 17 0 chr15 67692308 67692423 -18003331 + MER5B DNA MER1_type 3 119 -59 205 379 21 11 chr15 67692484 67692579 -18003175 + MIR SINE MIR 45 140 -122 190 292 14 56 chr15 67692756 67692828 -18002926 + L3 LINE CR1 1509 1577 0 306 0 0 0 chr15 67692912 67692946 -18002808 + (T)n Simple_repeat Simple_repeat 1 34 0 627 263 11 42 chr15 67693191 67693329 -18002425 - MLT1A1 LTR MaLR -181 184 52 2188 122 117 8 chr15 67693329 67693715 -18002039 - MSTA LTR MaLR 0 428 1 627 263 11 42 chr15 67693715 67693766 -18001988 - MLT1A1 LTR MaLR -313 52 1 277 333 67 31 chr15 67694336 67694531 -18001223 + L2 LINE L2 2812 3013 -300 315 154 0 0 chr15 67694549 67694601 -18001153 + MIR SINE MIR 18 69 -193 319 291 23 0 chr15 67694621 67694707 -18001047 + MIR SINE MIR 174 261 -1 637 210 74 40 chr15 67694776 67694952 -18000802 + L2 LINE L2 3132 3313 0 1670 209 27 0 chr15 67694999 67695329 -18000425 - MLT1A1 LTR MaLR -2 363 25 1878 157 0 3 chr15 67695781 67696086 -17999668 - AluJb SINE Alu -8 304 1 1420 237 55 32 chr15 67696114 67696494 -17999260 + MLT1J LTR MaLR 111 499 -12 560 236 14 107 chr15 67697192 67697387 -17998367 + L2 LINE L2 3118 3293 -20 1864 131 10 10 chr15 67697387 67697685 -17998069 + AluSx SINE Alu 1 298 -14 560 236 14 107 chr15 67697685 67697705 -17998049 + L2 LINE L2 3293 3313 0 1822 147 55 58 chr15 67698169 67698517 -17997237 - MER7A DNA MER2_type -1 345 1 257 256 96 51 chr15 67698903 67699059 -17996695 - MER103 DNA DNA -3 163 1 578 293 76 36 chr15 67700501 67700750 -17995004 + L2 LINE L2 3055 3313 0 655 207 279 22 chr15 67700759 67700981 -17994773 - MLT1K LTR MaLR -127 461 183 410 245 75 54 chr15 67701073 67701220 -17994534 - MIR SINE MIR -49 213 64 892 181 7 0 chr15 67701236 67701385 -17994369 + MLT1A2 LTR MaLR 225 374 0 257 150 0 0 chr15 67701653 67701693 -17994061 - MLT1A1 LTR MaLR -417 40 1 1212 254 61 31 chr15 67701694 67701852 -17993902 - HAL1 LINE L1 -154 2353 2201 2151 190 68 14 chr15 67701852 67702295 -17993459 - MLT1C LTR MaLR 0 467 1 1212 254 61 31 chr15 67702295 67702625 -17993129 - HAL1 LINE L1 -306 2201 1850 1341 236 29 9 chr15 67702660 67703003 -17992751 - HAL1 LINE L1 -736 1771 1422 364 234 204 15 chr15 67703006 67703143 -17992611 + MLT1E LTR MaLR 1 163 -430 1770 230 75 31 chr15 67703145 67703598 -17992156 + MLT1E LTR MaLR 120 592 -1 2507 226 61 139 chr15 67703649 67705072 -17990682 - HAL1 LINE L1 -1182 1325 14 310 288 126 0 chr15 67705213 67705324 -17990430 + L1MEd LINE L1 59 183 -5936 379 287 96 0 chr15 67705600 67705715 -17990039 - L2 LINE L2 -587 2727 2602 265 197 16 16 chr15 67705717 67705778 -17989976 - MLT1G LTR MaLR -2 553 493 1267 239 219 14 chr15 67705819 67706258 -17989496 - MLT1G LTR MaLR -52 538 10 462 271 27 71 chr15 67706261 67706486 -17989268 - L2 LINE L2 -704 2610 2396 45204 37 4 1 chr15 67706547 67712682 -17983072 + L1PA4 LINE L1 1 6152 -3 360 257 50 145 chr15 67712700 67712957 -17982797 - MIR SINE MIR -15 247 5 234 352 76 0 chr15 67712971 67713076 -17982678 - MIR SINE MIR -138 124 12 186 43 0 0 chr15 67713252 67713275 -17982479 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 235 278 53 99 chr15 67713640 67713791 -17981963 + L2 LINE L2 3170 3313 0 328 243 106 78 chr15 67714395 67714569 -17981185 + MIR SINE MIR 10 192 -62 234 273 182 0 chr15 67715106 67715238 -17980516 + MIR3 SINE MIR 38 193 -15 192 225 0 0 chr15 67715683 67715723 -17980031 - MIR SINE MIR -72 190 151 2336 97 17 175 chr15 67715723 67716259 -17979495 + LTR12 LTR ERV1 2 452 -262 264 261 48 8 chr15 67716259 67716354 -17979400 - MIR SINE MIR -26 182 84 217 228 79 69 chr15 67716688 67716789 -17978965 - MIR SINE MIR -74 134 33 235 280 121 45 chr15 67717127 67717284 -17978470 + MIR SINE MIR 24 192 -70 2113 123 0 3 chr15 67717532 67717876 -17977878 + AluSq SINE Alu 1 343 0 2119 107 10 3 chr15 67718068 67718358 -17977396 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr15 67719316 67719339 -17976415 + (ATG)n Simple_repeat Simple_repeat 2 24 0 829 222 30 30 chr15 67719382 67719429 -17976325 - MIR SINE MIR -57 205 159 1893 171 66 85 chr15 67719429 67719944 -17975810 + MLT1D LTR MaLR 1 505 0 829 222 30 30 chr15 67719944 67720099 -17975655 - MIR SINE MIR -102 160 3 276 289 67 30 chr15 67720128 67720263 -17975491 - MIR SINE MIR -53 209 70 2160 133 141 5 chr15 67720281 67720658 -17975096 + MSTA LTR MaLR 1 428 0 2336 91 0 19 chr15 67721802 67722111 -17973643 - AluSc SINE Alu -6 303 1 1928 148 0 13 chr15 67723013 67723316 -17972438 - AluJo SINE Alu -13 299 1 716 216 40 17 chr15 67723903 67724079 -17971675 - MER5A DNA MER1_type 0 189 10 243 214 0 0 chr15 67724412 67724454 -17971300 + L2 LINE L2 3258 3299 -14 214 196 20 20 chr15 67725337 67725388 -17970366 + CT-rich Low_complexity Low_complexity 1 51 0 508 216 0 23 chr15 67725564 67725735 -17970019 + CT-rich Low_complexity Low_complexity 3 169 0 184 290 188 0 chr15 67725749 67725818 -17969936 - L2 LINE L2 -23 3249 3168 401 262 10 10 chr15 67726120 67726223 -17969531 + MIR3 SINE MIR 85 187 -21 419 226 161 30 chr15 67726286 67726454 -17969300 + MIR SINE MIR 12 201 -61 454 265 0 82 chr15 67727242 67727345 -17968409 - MIR SINE MIR -25 237 156 1564 263 30 25 chr15 67727345 67727752 -17968002 + MLT1I LTR MaLR 1 409 0 454 265 0 82 chr15 67727752 67727844 -17967910 - MIR SINE MIR -106 156 58 230 306 45 82 chr15 67728763 67728897 -17966857 - MIR SINE MIR -17 245 117 212 246 0 33 chr15 67728905 67728966 -17966788 + MIR SINE MIR 204 262 0 360 333 6 57 chr15 67729123 67729300 -17966454 + MER5B DNA MER1_type 7 174 -4 2416 86 0 0 chr15 67729471 67729772 -17965982 + AluY SINE Alu 9 309 -2 1296 233 97 78 chr15 67729790 67730317 -17965437 + MLT1F1 LTR MaLR 5 566 -1 1590 217 115 23 chr15 67730360 67730803 -17964951 + MLT1D LTR MaLR 22 505 0 236 337 11 33 chr15 67731478 67731570 -17964184 - MIR3 SINE MIR -113 95 6 192 278 227 21 chr15 67731616 67731713 -17964041 + MIR SINE MIR 30 146 -62 222 152 76 136 chr15 67732519 67732585 -17963169 - L2 LINE L2 -1 3312 3251 487 274 153 14 chr15 67732589 67732804 -17962950 + MIR SINE MIR 4 248 -14 2263 92 0 7 chr15 67734336 67734657 -17961097 - AluSc SINE Alu 0 319 1 293 321 163 19 chr15 67734798 67735166 -17960588 + L2 LINE L2 2228 2648 -666 1093 285 56 46 chr15 67735297 67735837 -17959917 - MLT1H LTR MaLR -4 545 1 264 354 79 8 chr15 67736812 67736939 -17958815 - L2 LINE L2 -13 3300 3165 837 134 8 0 chr15 67736979 67737098 -17958656 - FLAM_A SINE Alu -13 120 1 200 264 38 19 chr15 67737114 67737167 -17958587 + MIR SINE MIR 35 88 -174 376 290 97 16 chr15 67737312 67737436 -17958318 + MIR SINE MIR 95 228 -34 661 247 33 55 chr15 67738779 67738925 -17956829 + MIR SINE MIR 65 208 -54 2458 180 9 11 chr15 67738925 67739385 -17956369 - MER65C LTR ERV1 -2 459 1 661 247 33 55 chr15 67739385 67739420 -17956334 + MIR SINE MIR 208 242 -20 278 353 68 53 chr15 67739740 67740020 -17955734 + L2 LINE L2 2815 3104 -168 1621 209 30 12 chr15 67740020 67740351 -17955403 + MER58B DNA MER1_type 1 337 -4 278 353 68 53 chr15 67740351 67740467 -17955287 + L2 LINE L2 3104 3217 -55 270 197 55 102 chr15 67740467 67740594 -17955160 + LTR33A LTR ERVL 237 357 -166 235 242 231 44 chr15 67740620 67740711 -17955043 - MIR SINE MIR -59 149 43 206 319 8 59 chr15 67741166 67741285 -17954469 + L3 LINE CR1 1274 1386 -191 2091 128 3 0 chr15 67741355 67741651 -17954103 - AluSg SINE Alu -13 297 1 351 0 0 0 chr15 67742075 67742114 -17953640 + (TG)n Simple_repeat Simple_repeat 2 40 0 2005 130 11 0 chr15 67742781 67743065 -17952689 + AluSx SINE Alu 13 299 -13 273 347 74 0 chr15 67743071 67743192 -17952562 + MIR SINE MIR 36 165 -97 244 295 19 38 chr15 67743195 67743300 -17952454 + MLT1K LTR MaLR 3 105 -483 1280 256 133 9 chr15 67743300 67743722 -17952032 + MLT1K LTR MaLR 1 474 -2 311 226 59 29 chr15 67743735 67743837 -17951917 + MIR SINE MIR 153 257 -5 1847 163 6 15 chr15 67744707 67745045 -17950709 - MER58B DNA MER1_type -6 335 1 300 332 41 36 chr15 67745104 67745154 -17950600 - MIR SINE MIR -58 204 156 4567 152 23 30 chr15 67745154 67745944 -17949810 - LTR1 LTR ERV1 0 785 2 300 332 41 36 chr15 67745944 67746089 -17949665 - MIR SINE MIR -106 156 8 201 385 48 42 chr15 67746109 67746275 -17949479 + L2 LINE L2 3080 3246 -26 261 163 0 0 chr15 67746275 67746324 -17949430 + CT-rich Low_complexity Low_complexity 1 49 0 210 222 9 139 chr15 67746898 67747006 -17948748 + L2 LINE L2 3179 3272 0 2254 93 3 10 chr15 67747009 67747333 -17948421 + AluSq SINE Alu 1 313 0 332 222 10 61 chr15 67747703 67747802 -17947952 - MIR3 SINE MIR -3 205 112 459 333 23 6 chr15 67748043 67748217 -17947537 - MER5A DNA MER1_type -6 183 7 527 255 44 2 chr15 67748609 67748771 -17946983 - MIR SINE MIR -63 145 22 186 301 137 14 chr15 67749434 67749507 -17946247 + MIR3 SINE MIR 124 205 -3 366 320 116 6 chr15 67749550 67749722 -17946032 - MIR SINE MIR -6 256 66 1096 164 80 5 chr15 67749851 67750052 -17945702 + MER20 DNA MER1_type 4 219 0 1002 230 47 64 chr15 67750293 67750327 -17945427 + MLT2C1 LTR ERVL 1 34 -363 722 164 8 22 chr15 67750327 67750461 -17945293 - FLAM_C SINE Alu 0 133 2 1002 230 47 64 chr15 67750461 67750916 -17944838 + MLT2C1 LTR ERVL 34 397 0 918 194 56 6 chr15 67752149 67752329 -17943425 - MER5A DNA MER1_type 0 189 1 521 289 106 7 chr15 67755030 67755331 -17940423 - MLT1I LTR MaLR -6 403 36 1165 178 205 51 chr15 67756348 67756719 -17939035 - MSTC LTR MaLR 0 428 1 378 351 62 27 chr15 67756785 67757158 -17938596 - HERVL LTR ERVL -452 5312 4927 335 301 0 0 chr15 67757168 67757251 -17938503 - HERVL LTR ERVL -3858 1796 1714 1168 220 92 38 chr15 67757285 67757685 -17938069 - L1ME LINE L1 -2227 3988 3567 * 1568 280 64 8 chr15 67757683 67758406 -17937348 - L1ME LINE L1 -4578 1818 1007 1021 155 0 53 chr15 67758410 67758597 -17937157 - AluJb SINE Alu 0 312 136 3211 241 49 37 chr15 67758598 67759209 -17936545 - L1MEc LINE L1 -3017 3198 2596 1976 140 98 25 chr15 67759209 67759608 -17936146 - MSTC LTR MaLR 0 428 1 3211 241 49 37 chr15 67759608 67760374 -17935380 - L1MEc LINE L1 -3619 2596 1848 2194 113 0 13 chr15 67760374 67760675 -17935079 + AluSx SINE Alu 5 301 -11 3211 241 49 37 chr15 67760675 67760932 -17934822 - L1MEc LINE L1 -4367 1848 1596 375 198 33 22 chr15 67811052 67811143 -17884611 + L1MB8 LINE L1 6040 6131 -47 258 291 0 0 chr15 67811404 67811531 -17884223 + (CA)n Simple_repeat Simple_repeat 2 128 0 232 191 0 0 chr15 67811591 67811633 -17884121 + L1MB7 LINE L1 6134 6175 -9 328 326 105 0 chr15 67812794 67812966 -17882788 + L1MB7 LINE L1 3014 3203 -2943 549 44 0 0 chr15 67814149 67814217 -17881537 + (CA)n Simple_repeat Simple_repeat 1 68 0 2165 58 0 4 chr15 67815189 67815464 -17880290 + AluY SINE Alu 26 299 -12 333 327 65 56 chr15 67815503 67815824 -17879930 - L1M4 LINE L1 -2382 3764 3441 1267 191 34 0 chr15 67815824 67816060 -17879694 + AluSx SINE Alu 2 245 -67 471 130 0 0 chr15 67816073 67816150 -17879604 + (TTCCC)n Simple_repeat Simple_repeat 3 79 0 1671 70 0 5 chr15 67816153 67816366 -17879388 - AluSq SINE Alu -101 212 1 680 140 9 0 chr15 67816551 67816658 -17879096 - AluSq/x SINE Alu -204 109 2 235 224 20 0 chr15 67816954 67817003 -17878751 + L2 LINE L2 3263 3312 -1 184 227 216 31 chr15 67817891 67817988 -17877766 + L2 LINE L2 3156 3270 -2 2136 261 43 79 chr15 67818005 67818836 -17876918 + HAL1 LINE L1 2 802 -1705 1749 172 3 47 chr15 67819312 67819632 -17876122 + AluJb SINE Alu 3 308 -4 622 226 0 0 chr15 67819665 67819789 -17875965 + L2 LINE L2 3189 3312 -1 2303 84 13 0 chr15 67819910 67820209 -17875545 + AluSp SINE Alu 9 311 -2 378 298 81 5 chr15 67820238 67820436 -17875318 + L1MB7 LINE L1 3866 4078 -2068 9184 183 38 33 chr15 67820596 67821353 -17874401 + L1MB7 LINE L1 3209 3961 -2223 1887 179 0 3 chr15 67821353 67821666 -17874088 + AluJo SINE Alu 1 312 0 9184 183 38 33 chr15 67821666 67823858 -17871896 + L1MB7 LINE L1 3961 6165 -19 947 170 177 117 chr15 67823938 67824221 -17871533 + AluY SINE Alu 1 300 -1 941 276 159 32 chr15 67824254 67824876 -17870878 + L1MB7 LINE L1 4415 5115 -1031 266 79 0 0 chr15 67824977 67825015 -17870739 - HERVH LTR ERV1 -7675 38 1 3679 60 0 9 chr15 67825017 67825469 -17870285 - LTR7 LTR ERV1 -2 448 1 3445 162 29 2 chr15 67825469 67826057 -17869697 + L1MB7 LINE L1 5562 6165 -19 252 94 0 57 chr15 67826343 67826396 -17869358 + L1MC5 LINE L1 7868 7917 -44 23 0 0 0 chr15 67826646 67826669 -17869085 + AT_rich Low_complexity Low_complexity 1 23 0 429 220 93 13 chr15 67826673 67826823 -17868931 - L1M4 LINE L1 -794 5352 5191 924 256 26 10 chr15 67827041 67827352 -17868402 - L2 LINE L2 -472 2842 2431 379 228 69 0 chr15 67827400 67827501 -17868253 + L2 LINE L2 3157 3264 -8 186 43 0 0 chr15 67828005 67828028 -17867726 + (CAT)n Simple_repeat Simple_repeat 1 23 0 412 293 71 21 chr15 67828041 67828181 -17867573 - MIR SINE MIR 0 262 116 548 185 15 52 chr15 67828324 67828459 -17867295 - FAM SINE Alu -21 164 35 234 0 0 0 chr15 67828704 67828730 -17867024 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 432 0 0 0 chr15 67828729 67828777 -17866977 + (CA)n Simple_repeat Simple_repeat 1 48 0 341 269 62 31 chr15 67828875 67829005 -17866749 + MER91A DNA MER1_type 24 157 -39 254 288 100 0 chr15 67829026 67829106 -17866648 + MER91A DNA MER1_type 109 196 0 252 260 71 47 chr15 67829164 67829291 -17866463 - L2 LINE L2 0 3272 3143 190 313 49 42 chr15 67829359 67829503 -17866251 - L2 LINE L2 -300 2972 2828 303 130 18 55 chr15 67829608 67829663 -17866091 - AluS SINE Alu -34 266 222 1076 257 19 104 chr15 67829788 67829967 -17865787 + L1MA1 LINE L1 5258 5451 -711 4877 92 20 13 chr15 67829967 67830083 -17865671 - L1PB1 LINE L1 -4 6147 6033 2214 101 10 0 chr15 67830083 67830379 -17865375 - AluSp SINE Alu -14 299 1 4877 92 20 13 chr15 67830379 67830619 -17865135 - L1PB1 LINE L1 -118 6033 5796 360 0 0 0 chr15 67830619 67830659 -17865095 + (TA)n Simple_repeat Simple_repeat 1 40 0 4877 92 20 13 chr15 67830659 67830983 -17864771 - L1PB1 LINE L1 -355 5796 5461 1076 257 19 104 chr15 67830983 67831526 -17864228 + L1MA1 LINE L1 5451 5817 -345 625 165 23 53 chr15 67831609 67831742 -17864012 - AluJ SINE Alu 0 312 184 859 154 0 7 chr15 67831742 67831878 -17863876 - AluJ SINE Alu -177 135 1 2249 123 3 0 chr15 67831990 67832299 -17863455 - AluSx SINE Alu 0 312 3 22 56 0 0 chr15 67832413 67832449 -17863305 + AT_rich Low_complexity Low_complexity 1 36 0 208 308 38 53 chr15 67832495 67832628 -17863126 + MIR SINE MIR 82 212 -50 6603 163 15 33 chr15 67833642 67834863 -17860891 - L1MC1 LINE L1 -1 6332 5156 2121 142 0 3 chr15 67834863 67835174 -17860580 - AluSg SINE Alu 0 310 1 6603 163 15 33 chr15 67835174 67835669 -17860085 - L1MC1 LINE L1 -1177 5156 4654 1280 108 0 27 chr15 67835669 67835855 -17859899 + LTR57 LTR ERVL 1 181 -230 4117 260 195 18 chr15 67836405 67838529 -17857225 + L2 LINE L2 601 3097 -216 1509 242 120 11 chr15 67838617 67839068 -17856686 - HAL1 LINE L1 -662 1845 1346 1051 204 263 3 chr15 67839072 67839409 -17856345 + MER63B DNA MER1_type 1 427 -7 587 233 213 12 chr15 67839414 67839672 -17856082 - HAL1 LINE L1 -1162 1345 1036 2210 72 3 39 chr15 67839674 67839981 -17855773 - AluY SINE Alu -15 296 1 1656 190 26 3 chr15 67840031 67840336 -17855418 - AluJb SINE Alu 0 312 1 282 219 0 14 chr15 67840353 67840426 -17855328 - HAL1 LINE L1 -1594 913 842 282 227 0 15 chr15 67840438 67840504 -17855250 + Charlie2b DNA MER1_type 955 1019 -1763 679 249 108 56 chr15 67840518 67840570 -17855184 + Charlie2b DNA MER1_type 2291 2339 -523 6528 82 21 10 chr15 67840570 67842125 -17853629 + SVA Other Other 3 1378 -8 679 249 108 56 chr15 67842125 67842480 -17853274 + Charlie2b DNA MER1_type 2339 2720 -62 184 54 81 0 chr15 67843415 67843452 -17852302 + A-rich Low_complexity Low_complexity 2 41 0 2252 123 15 6 chr15 67843739 67844081 -17851673 + L1PA13 LINE L1 5816 6160 -3 1295 143 10 5 chr15 67844215 67844418 -17851336 - AluSg/x SINE Alu 0 312 109 437 123 0 62 chr15 67844419 67844500 -17851254 + AluJ/FRAM SINE Alu 231 306 -6 745 191 134 0 chr15 67845174 67845331 -17850423 - MER5B DNA MER1_type 0 178 1 361 195 122 12 chr15 67847047 67847129 -17848625 + L1ME3 LINE L1 6028 6118 -44 2237 107 0 3 chr15 67847209 67847509 -17848245 + AluSx SINE Alu 1 299 -13 298 278 14 0 chr15 67847634 67847706 -17848048 + MIR SINE MIR 76 148 -114 1788 222 138 35 chr15 67847757 67847822 -17847932 - MLT1F LTR MaLR 0 542 485 1896 158 17 7 chr15 67847822 67848114 -17847640 + AluJo SINE Alu 1 295 -17 1788 222 138 35 chr15 67848114 67848539 -17847215 - MLT1F LTR MaLR -57 485 1 2298 177 86 14 chr15 67848602 67849100 -17846654 + MER74A LTR ERVL 1 534 -24 2596 226 102 12 chr15 67849165 67849845 -17845909 - HsTC2 DNA Tc2 -1153 745 5 247 246 0 62 chr15 67849859 67849924 -17845830 + MIR SINE MIR 200 260 -2 394 267 176 11 chr15 67850237 67850413 -17845341 - MIR SINE MIR -12 250 46 776 287 108 28 chr15 67851205 67851592 -17844162 + L2 LINE L2 2087 2504 -810 316 222 0 153 chr15 67851625 67851769 -17843985 + MLT1L LTR MaLR 140 261 -354 558 213 51 72 chr15 67851840 67851933 -17843821 + MLT1L LTR MaLR 365 458 -157 3879 120 21 2 chr15 67851933 67852450 -17843304 + MER1A DNA MER1_type 1 527 0 558 213 51 72 chr15 67852450 67852584 -17843170 + MLT1L LTR MaLR 458 615 0 1916 366 124 13 chr15 67852588 67853610 -17842144 - L2 LINE L2 -1217 2097 962 376 177 32 165 chr15 67853620 67853778 -17841976 + MLT1J2 LTR MaLR 14 150 -300 463 277 28 23 chr15 67853843 67854020 -17841734 + MLT1J LTR MaLR 327 504 -7 481 283 20 40 chr15 67854029 67854227 -17841527 - L2 LINE L2 -2361 953 760 242 328 59 50 chr15 67854225 67854344 -17841410 - MIR SINE MIR -136 126 7 * 256 299 13 13 chr15 67854491 67854568 -17841186 + Tigger5 DNA MER2_type 5 81 -2242 424 143 0 0 chr15 67854608 67854671 -17841083 + Tigger5 DNA MER2_type 2261 2323 0 2343 73 3 22 chr15 67854694 67855011 -17840743 - AluY SINE Alu 0 311 1 1458 148 82 0 chr15 67857403 67857696 -17838058 - MER33 DNA MER1_type -13 311 1 2862 10 0 0 chr15 67857730 67858038 -17837716 - AluY SINE Alu -3 308 1 558 277 128 41 chr15 67858298 67858688 -17837066 + L1ME4a LINE L1 5555 5978 -143 1177 222 119 57 chr15 67858817 67859007 -17836747 + L1MC5 LINE L1 7329 7506 -455 2379 87 3 10 chr15 67859007 67859319 -17836435 + AluSx SINE Alu 1 310 -2 1177 222 119 57 chr15 67859319 67859708 -17836046 + L1MC5 LINE L1 7506 7944 -17 1910 166 0 3 chr15 67860975 67861277 -17834477 - AluJb SINE Alu -11 301 1 243 146 0 0 chr15 67861393 67861434 -17834320 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 761 124 0 0 chr15 67861459 67861564 -17834190 - FLAM_C SINE Alu -33 110 6 478 293 45 13 chr15 67861570 67861881 -17833873 - L1M4 LINE L1 -2966 3416 3096 31 0 0 0 chr15 67861962 67861993 -17833761 + AT_rich Low_complexity Low_complexity 1 31 0 212 79 53 0 chr15 67862389 67862427 -17833327 + CT-rich Low_complexity Low_complexity 2 41 0 889 170 0 15 chr15 67862431 67862566 -17833188 - FLAM_C SINE Alu 0 133 1 342 265 114 32 chr15 67862566 67862964 -17832790 - L1M4 LINE L1 -3656 2726 2295 1258 167 0 0 chr15 67863620 67863830 -17831924 - L1MB3 LINE L1 -249 5934 5725 401 94 0 16 chr15 67863830 67863894 -17831860 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 242 28 0 28 chr15 67863894 67863930 -17831824 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1737 175 0 7 chr15 67863937 67864217 -17831537 - AluJb SINE Alu -34 278 1 296 174 87 14 chr15 67864217 67864286 -17831468 - L1MB3 LINE L1 -449 5734 5661 2466 56 0 10 chr15 67864296 67864599 -17831155 + AluY SINE Alu 1 300 -11 192 296 0 70 chr15 67865392 67865463 -17830291 + MIR SINE MIR 42 107 -155 434 238 143 75 chr15 67865958 67866366 -17829388 - L1ME4a LINE L1 -6 6115 5667 2267 87 3 0 chr15 67866366 67866652 -17829102 - AluSp SINE Alu -18 295 9 434 238 143 75 chr15 67866652 67866734 -17829020 - L1ME4a LINE L1 -454 5667 5592 764 65 0 0 chr15 67867576 67867669 -17828085 - MER41D LTR ERV1 -464 93 1 849 168 75 23 chr15 67867669 67867842 -17827912 + L1M4 LINE L1 5386 5567 -607 3726 58 0 7 chr15 67867843 67868294 -17827460 - LTR7 LTR ERV1 -2 448 1 2625 80 45 3 chr15 67868294 67868670 -17827084 - HERVH LTR ERV1 0 7713 7322 1311 129 18 36 chr15 67868668 67868892 -17826862 - HERVH LTR ERV1 -1894 5819 5600 * 4328 149 1 1 chr15 67868893 67869555 -17826199 - HERVH LTR ERV1 -2564 5149 4488 6324 86 2 2 chr15 67869557 67870411 -17825343 - HERVH LTR ERV1 -3720 3993 3140 * 10666 98 1 13 chr15 67870390 67871884 -17823870 - HERVH LTR ERV1 -4718 2995 1520 3363 13 0 5 chr15 67871884 67872265 -17823489 - L1PA3 LINE L1 0 6155 5777 3584 41 0 0 chr15 67872265 67872725 -17823029 - SVA Other Other 0 1386 960 563 269 134 9 chr15 67872965 67873181 -17822573 + MIR SINE MIR 20 262 0 2249 86 0 7 chr15 67873325 67873627 -17822127 - AluSx SINE Alu -12 300 1 2490 120 11 3 chr15 67873933 67874284 -17821470 + MLT1A1 LTR MaLR 1 354 -11 440 220 46 52 chr15 67874485 67874658 -17821096 - L3 LINE CR1 -236 1341 1170 218 200 0 0 chr15 67875126 67875166 -17820588 + (TG)n Simple_repeat Simple_repeat 2 41 0 2230 89 3 0 chr15 67875550 67875843 -17819911 + AluSp SINE Alu 1 294 -19 242 259 17 0 chr15 67876248 67876306 -17819448 - MIR SINE MIR -2 260 202 303 318 0 24 chr15 67876307 67876433 -17819321 - L1MC/D LINE L1 -2270 5538 5416 390 309 86 19 chr15 67876524 67876686 -17819068 + L1MC4a LINE L1 2428 2600 -3546 314 184 184 0 chr15 67877834 67877910 -17817844 - L2 LINE L2 -3 3269 3180 272 246 146 36 chr15 67877981 67878091 -17817663 + MIR SINE MIR 80 201 -61 338 319 14 0 chr15 67879499 67879640 -17816114 + L1P LINE L1 4878 5020 -1126 1679 144 0 19 chr15 67879719 67879990 -17815764 - AluSx SINE Alu -17 295 30 421 284 63 59 chr15 67880024 67880278 -17815476 + L1MC4a LINE L1 5038 5292 -854 553 181 0 35 chr15 67880279 67880395 -17815359 + FLAM_A SINE Alu 31 142 0 974 256 157 40 chr15 67880408 67881026 -17814728 + L1MC4a LINE L1 5315 6004 -1804 744 283 77 30 chr15 67881342 67881706 -17814048 + L1MC/D LINE L1 5284 5664 -2144 308 391 64 6 chr15 67882272 67882428 -17813326 - L2 LINE L2 -4 3268 3104 891 199 45 63 chr15 67882775 67882996 -17812758 + MER20 DNA MER1_type 2 218 -1 221 0 35 0 chr15 67883271 67883300 -17812454 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 185 277 43 0 chr15 67883961 67884008 -17811746 + MIR SINE MIR 103 151 -111 236 282 69 30 chr15 67884729 67884860 -17810894 - L2 LINE L2 -59 3254 3119 264 30 0 0 chr15 67885285 67885318 -17810436 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1714 189 0 3 chr15 67889414 67889716 -17806038 + AluJb SINE Alu 1 301 -11 4082 183 43 48 chr15 67889718 67891135 -17804619 + L1MB3 LINE L1 4511 5918 -265 799 163 31 0 chr15 67891135 67891264 -17804490 + FLAM_A SINE Alu 1 133 0 4082 183 43 48 chr15 67891264 67891526 -17804228 + L1MB3 LINE L1 5918 6180 -3 1170 224 40 97 chr15 67892103 67892867 -17802887 + L1MDb LINE L1 775 1453 -4953 1697 180 7 0 chr15 67892876 67893176 -17802578 + AluJb SINE Alu 9 310 -2 224 167 48 0 chr15 67893176 67893218 -17802536 + GA-rich Low_complexity Low_complexity 1 44 0 1041 202 23 74 chr15 67893218 67893558 -17802196 + L1MDb LINE L1 1297 1730 -4676 447 278 222 8 chr15 67893559 67893825 -17801929 + L2 LINE L2 2991 3313 0 2067 113 23 0 chr15 67893892 67894192 -17801562 + AluSg SINE Alu 1 307 -3 627 212 152 0 chr15 67894567 67894699 -17801055 - AluJb SINE Alu -24 288 137 443 236 94 0 chr15 67894708 67894814 -17800940 + MER58A DNA MER1_type 46 161 0 182 356 0 0 chr15 67894867 67894912 -17800842 + L2 LINE L2 3198 3242 -30 671 317 124 15 chr15 67894977 67895308 -17800446 + L2 LINE L2 2946 3312 -1 3653 75 22 1 chr15 67895333 67895841 -17799913 + LTR6B LTR ERV1 1 558 0 3209 117 7 13 chr15 67895841 67896294 -17799460 + HERVS71 LTR ERV1 1 450 -8528 231 36 0 0 chr15 67896294 67896322 -17799432 + (TC)n Simple_repeat Simple_repeat 2 29 0 12853 113 19 8 chr15 67896322 67897751 -17798003 + HERVS71 LTR ERV1 502 1913 -7065 7989 54 1 0 chr15 67897751 67898716 -17797038 + LTR5 LTR ERVK 1 966 -3 12853 113 19 8 chr15 67898716 67901040 -17794714 + HERVS71 LTR ERV1 1913 5667 -3311 7095 104 5 3 chr15 67901034 67901982 -17793772 + HERVS71 LTR ERV1 6090 7039 -1939 * 3137 133 70 10 chr15 67901978 67902465 -17793289 + HERVS71 LTR ERV1 7141 7656 -1322 * 2060 104 3 0 chr15 67902565 67902853 -17792901 - AluY SINE Alu -18 293 5 519 217 43 67 chr15 67903112 67903413 -17792341 + L1MC/D LINE L1 5067 5364 -863 1601 174 28 7 chr15 67903413 67903701 -17792053 + AluJo SINE Alu 1 294 -18 519 217 43 67 chr15 67903701 67903778 -17791976 + L1MC/D LINE L1 5364 5441 -786 311 226 157 19 chr15 67903775 67903934 -17791820 + L1ME3 LINE L1 5869 6049 -113 * 1273 99 0 0 chr15 67903935 67904107 -17791647 - AluSq SINE Alu -7 306 135 340 169 52 0 chr15 67904107 67904184 -17791570 + L1ME3A LINE L1 6039 6119 -51 2279 83 3 13 chr15 67904201 67904513 -17791241 - AluY SINE Alu -2 309 1 663 300 97 22 chr15 67904560 67904880 -17790874 + L1MC/D LINE L1 5428 5771 -2037 786 105 0 75 chr15 67904886 67905019 -17790735 + FLAM_C SINE Alu 9 131 -12 386 232 36 9 chr15 67905024 67905136 -17790618 + L1MD3 LINE L1 7870 7984 -11 2021 125 0 0 chr15 67905150 67905454 -17790300 + AluSx SINE Alu 9 312 0 416 243 66 26 chr15 67905931 67906083 -17789671 - L2 LINE L2 0 3313 3156 2376 57 0 0 chr15 67906728 67907029 -17788725 - AluY SINE Alu -10 301 1 602 231 37 76 chr15 67907031 67907261 -17788493 + MIR SINE MIR 37 256 -6 851 224 24 0 chr15 67907322 67907492 -17788262 + MER45A DNA AcHobo 1 174 -4 30 0 0 0 chr15 67907601 67907631 -17788123 + AT_rich Low_complexity Low_complexity 1 30 0 2139 189 23 92 chr15 67907631 67908243 -17787511 + L1M4 LINE L1 3524 4093 -2053 535 337 14 91 chr15 67908557 67909052 -17786702 + L2 LINE L2 2855 3311 -2 189 258 76 15 chr15 67909359 67909425 -17786329 + L2 LINE L2 3141 3210 -62 265 247 47 65 chr15 67909529 67909632 -17786122 - MIR SINE MIR -65 143 68 388 224 176 36 chr15 67910593 67910758 -17784996 + MIR SINE MIR 31 218 -44 203 289 0 0 chr15 67910731 67910776 -17784978 + L2 LINE L2 3269 3313 0 * 539 316 62 81 chr15 67911023 67911236 -17784518 - L2 LINE L2 -3 3269 3054 2036 137 0 0 chr15 67911236 67911542 -17784212 + AluSx SINE Alu 1 306 -6 539 316 62 81 chr15 67911542 67911839 -17783915 - L2 LINE L2 -218 3054 2728 544 219 15 29 chr15 67911866 67912003 -17783751 - L2 LINE L2 -40 3273 3139 4109 228 142 42 chr15 67912037 67912543 -17783211 - L2 LINE L2 -497 2817 2363 2054 107 27 0 chr15 67912543 67912842 -17782912 + AluSg SINE Alu 1 307 -3 4109 228 142 42 chr15 67912842 67913776 -17781978 - L2 LINE L2 -951 2363 1234 235 282 141 0 chr15 67914374 67914445 -17781309 - MER5B DNA MER1_type -97 81 1 1120 178 33 5 chr15 67914454 67914667 -17781087 + MER58A DNA MER1_type 2 220 -4 225 299 56 9 chr15 67914891 67914998 -17780756 + HAL1 LINE L1 2250 2361 -146 1396 73 6 64 chr15 67916435 67916762 -17778992 - SVA Other Other -530 856 549 666 72 7 36 chr15 67916774 67916912 -17778842 - SVA Other Other -592 794 661 5171 76 28 58 chr15 67916926 67918017 -17777737 - SVA Other Other -518 868 57 816 46 0 0 chr15 67918017 67918126 -17777628 + (GGGAGA)n Simple_repeat Simple_repeat 1 109 0 38808 35 19 3 chr15 67918158 67923823 -17771931 - L1P1 LINE L1 -371 5784 5 9264 92 8 16 chr15 67923831 67925230 -17770524 - HERVH LTR ERV1 -6186 1527 140 2498 66 0 3 chr15 67925910 67926212 -17769542 + AluY SINE Alu 1 301 -10 828 164 0 8 chr15 67926783 67926917 -17768837 - FLAM_C SINE Alu 0 133 1 381 295 79 0 chr15 67927133 67927272 -17768482 - Charlie8 DNA MER1_type -2266 151 2 186 133 0 0 chr15 67929481 67929511 -17766243 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 206 152 0 22 chr15 67930946 67930992 -17764762 + T-rich Low_complexity Low_complexity 3 47 0 25 51 0 0 chr15 67930993 67931032 -17764722 + AT_rich Low_complexity Low_complexity 1 39 0 189 321 76 38 chr15 67931413 67931544 -17764210 - MIR SINE MIR -88 174 39 182 299 130 26 chr15 67933142 67933219 -17762535 - L2 LINE L2 -29 3284 3200 1642 138 67 67 chr15 67934574 67934872 -17760882 + AluJb SINE Alu 5 302 -10 1830 153 11 3 chr15 67935828 67936157 -17759597 - AluSx SINE Alu 0 331 1 302 267 27 0 chr15 67936401 67936476 -17759278 + MIR SINE MIR 43 119 -143 615 301 29 17 chr15 67936911 67937084 -17758670 + MIR SINE MIR 22 196 -66 234 281 22 45 chr15 67937347 67937436 -17758318 - MIR3 SINE MIR -48 160 74 1672 184 3 3 chr15 67937452 67937756 -17757998 - AluJb SINE Alu 0 304 1 541 284 27 55 chr15 67937991 67938121 -17757633 + MER5B DNA MER1_type 1 126 -52 2026 52 94 8 chr15 67938121 67938420 -17757334 - AluY SINE Alu 0 311 1 541 284 27 55 chr15 67938420 67938472 -17757282 + MER5B DNA MER1_type 126 178 0 306 214 36 192 chr15 67938809 67939033 -17756721 - MER5A DNA MER1_type 0 189 1 2153 137 0 0 chr15 67939348 67939648 -17756106 - AluSg SINE Alu -10 300 1 213 233 0 0 chr15 67939710 67939753 -17756001 - MIR SINE MIR -88 120 78 1882 178 52 6 chr15 67939909 67940258 -17755496 + MER47A DNA MER2_type 2 366 0 1243 235 91 55 chr15 67940260 67940348 -17755406 - Charlie2 DNA MER1_type -147 2715 2632 859 203 18 18 chr15 67940348 67940511 -17755243 - AluJo/FRAM SINE Alu -3 299 137 1999 151 3 0 chr15 67940511 67940809 -17754945 - AluSx SINE Alu -13 299 1 1243 235 91 55 chr15 67940809 67940841 -17754913 - Charlie2 DNA MER1_type -230 2632 2603 2181 190 63 79 chr15 67940841 67941487 -17754267 + MER92B LTR ERV1 1 636 0 1243 235 91 55 chr15 67941487 67942023 -17753731 - Charlie2 DNA MER1_type -259 2603 2033 228 67 0 0 chr15 67942043 67942073 -17753681 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1395 150 43 17 chr15 67942076 67942310 -17753444 - AluJo SINE Alu -30 282 43 561 168 65 0 chr15 67942311 67942418 -17753336 - Charlie2 DNA MER1_type -870 1992 1879 498 288 97 4 chr15 67942435 67942661 -17753093 - Charlie2 DNA MER1_type -2544 318 72 2391 113 0 0 chr15 67942663 67942972 -17752782 + AluSg SINE Alu 1 309 -1 187 217 349 46 chr15 67943449 67943624 -17752130 + MIR SINE MIR 35 262 0 2157 57 25 18 chr15 67943654 67943964 -17751790 - AluSq SINE Alu 0 312 1 188 275 72 0 chr15 67944175 67944244 -17751510 - MIR SINE MIR -62 200 127 219 292 34 34 chr15 67945113 67945202 -17750552 + MER5A DNA MER1_type 55 143 -46 281 233 0 0 chr15 67945268 67945328 -17750426 - MIR SINE MIR -96 112 53 2336 123 42 60 chr15 67945644 67946091 -17749663 - LTR2B LTR ERV1 0 490 52 2134 105 48 3 chr15 67946351 67946646 -17749108 + AluJo SINE Alu 5 312 0 2425 78 3 0 chr15 67946717 67947011 -17748743 + AluSp SINE Alu 1 295 -18 890 167 32 61 chr15 67947020 67947266 -17748488 + L1MC5 LINE L1 7675 7913 -48 1060 143 17 17 chr15 67947950 67948125 -17747629 + AluJo SINE Alu 124 298 -14 2267 87 38 0 chr15 67948127 67948416 -17747338 + AluSc SINE Alu 1 300 -9 363 276 222 5 chr15 67948563 67948766 -17746988 - MIR SINE MIR -11 251 5 2081 126 23 0 chr15 67951151 67951453 -17744301 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr15 67951453 67951476 -17744278 + AT_rich Low_complexity Low_complexity 1 23 0 277 238 129 0 chr15 67952226 67952327 -17743427 - LTR33 LTR ERVL -4 517 404 386 278 200 9 chr15 67952387 67952617 -17743137 - LTR33 LTR ERVL -247 274 1 1595 131 113 14 chr15 67952659 67952934 -17742820 - AluJo SINE Alu -7 305 4 2522 69 0 19 chr15 67954443 67954762 -17740992 + AluSp SINE Alu 1 313 0 184 161 179 54 chr15 67955734 67955790 -17739964 - L2 LINE L2 -1352 1962 1900 323 305 47 8 chr15 67956211 67956339 -17739415 + L1MC4a LINE L1 5522 5654 -2154 619 198 126 6 chr15 67956344 67956511 -17739243 + MER3 DNA MER1_type 1 187 -22 371 173 52 13 chr15 67956584 67956673 -17739081 + L1MC4a LINE L1 5720 5817 -367 311 299 94 50 chr15 67956677 67956878 -17738876 + L1MC4a LINE L1 5857 6066 -1742 21 57 0 0 chr15 67956959 67956994 -17738760 + AT_rich Low_complexity Low_complexity 1 35 0 380 234 103 28 chr15 67957770 67957877 -17737877 + MIR3 SINE MIR 12 126 -82 259 328 16 32 chr15 67958524 67958649 -17737105 - L2 LINE L2 -217 3055 2933 441 167 0 0 chr15 67958657 67958723 -17737031 - AluJ/FLAM SINE Alu -245 67 2 801 187 0 8 chr15 67958744 67958878 -17736876 + FLAM_A SINE Alu 1 133 0 1192 206 87 61 chr15 67958889 67959102 -17736652 + MLT1D LTR MaLR 115 344 -161 3431 160 45 5 chr15 67959102 67959696 -17736058 - LTR26E LTR ERV1 -4 618 1 1192 206 87 61 chr15 67959696 67959861 -17735893 + MLT1D LTR MaLR 344 503 -2 349 299 39 19 chr15 67960070 67960224 -17735530 - L2 LINE L2 -562 2752 2596 853 164 121 35 chr15 67960289 67960496 -17735258 - MSTD LTR MaLR 0 396 204 276 154 0 0 chr15 67960502 67960554 -17735200 + GA-rich Low_complexity Low_complexity 1 52 0 483 170 40 10 chr15 67960591 67960691 -17735063 - MSTD LTR MaLR -325 103 1 1012 111 0 21 chr15 67961363 67961507 -17734247 - AluSq/x SINE Alu -171 141 1 257 209 81 70 chr15 67961857 67961943 -17733811 + LTR16A LTR ERVL 7 93 -357 324 228 258 18 chr15 67961971 67962138 -17733616 + LTR16A LTR ERVL 226 432 -18 408 217 47 0 chr15 67963048 67963154 -17732600 + LTR67 LTR ERVL 447 557 0 314 220 0 0 chr15 67963320 67963379 -17732375 - MER5A DNA MER1_type -80 109 51 672 225 163 65 chr15 67964496 67964841 -17730913 + L2 LINE L2 2304 2692 -622 1986 82 4 12 chr15 67964841 67965097 -17730657 - AluSx SINE Alu -10 302 49 672 225 163 65 chr15 67965097 67965137 -17730617 + L2 LINE L2 2692 2727 -587 294 219 175 29 chr15 67965122 67965259 -17730495 + L2 LINE L2 3147 3303 -10 * 558 306 100 9 chr15 67966674 67966710 -17729044 + MIR SINE MIR 16 47 -215 2467 67 0 41 chr15 67966710 67967026 -17728728 - AluY SINE Alu -8 303 1 558 306 100 9 chr15 67967026 67967226 -17728528 + MIR SINE MIR 47 262 0 371 276 141 12 chr15 67968438 67968608 -17727146 - MIR SINE MIR -15 247 56 413 333 118 5 chr15 67968820 67969006 -17726748 + MIR SINE MIR 20 226 -36 328 198 111 25 chr15 67969138 67969219 -17726535 + MIR SINE MIR 157 244 -18 191 244 59 0 chr15 67969747 67969812 -17725942 - MIR SINE MIR 0 262 194 760 279 58 83 chr15 67970036 67970679 -17725075 + L2 LINE L2 2606 3272 0 264 136 251 26 chr15 67970763 67970848 -17724906 - Charlie8 DNA MER1_type -2129 288 175 3101 124 24 20 chr15 67971965 67972507 -17723247 + L1MB2 LINE L1 5628 6171 0 514 292 88 90 chr15 67972513 67973170 -17722584 - L1MC4a LINE L1 -21 6100 5444 2195 117 0 3 chr15 67973856 67974172 -17721582 - AluSq SINE Alu 0 315 1 837 165 97 0 chr15 67974377 67974553 -17721201 - L1PB3 LINE L1 -2 6152 5960 500 109 109 69 chr15 67974659 67974760 -17720994 - LTR2B LTR ERV1 -385 105 1 2161 115 3 0 chr15 67976467 67976755 -17718999 + AluSq SINE Alu 1 289 -24 263 245 184 0 chr15 67976941 67977039 -17718715 - MER63 DNA MER1_type -271 791 676 1797 143 61 7 chr15 67977103 67977382 -17718372 + AluJb SINE Alu 1 294 -18 387 236 176 0 chr15 67977673 67977821 -17717933 + MIR SINE MIR 48 221 -41 294 344 16 16 chr15 67978656 67978781 -17716973 + MIR SINE MIR 33 157 -105 239 241 0 0 chr15 67980240 67980294 -17715460 - L2 LINE L2 -78 3194 3141 531 275 97 19 chr15 67982896 67983103 -17712651 + MIR SINE MIR 40 262 0 1980 153 3 13 chr15 67983946 67984253 -17711501 - AluJb SINE Alu -8 304 1 1602 140 106 15 chr15 67984309 67984458 -17711296 - L1MB2 LINE L1 -2 6169 6035 2499 88 3 0 chr15 67984458 67984766 -17710988 - AluSp SINE Alu -3 310 2 1602 140 106 15 chr15 67984766 67984945 -17710809 - L1MB2 LINE L1 -136 6035 5811 882 147 0 40 chr15 67984965 67985115 -17710639 - AluJo SINE Alu -94 218 75 194 338 62 0 chr15 68085611 68085691 -17610063 - L3 LINE CR1 -117 1460 1376 1016 159 167 35 chr15 68086332 68086559 -17609195 + AluJb SINE Alu 29 285 -27 2376 204 106 17 chr15 68086578 68087282 -17608472 + L1MEc LINE L1 1733 2508 -3707 2357 66 0 16 chr15 68087282 68087587 -17608167 + AluY SINE Alu 1 300 -11 2376 204 106 17 chr15 68087587 68087945 -17607809 + L1MEc LINE L1 2508 2833 -3382 195 42 0 0 chr15 68088171 68088195 -17607559 + (GGA)n Simple_repeat Simple_repeat 2 25 0 958 239 42 0 chr15 68089192 68089405 -17606349 + MIR SINE MIR 14 235 -27 2176 85 6 32 chr15 68089406 68089722 -17606032 - AluSq SINE Alu -4 309 2 209 238 0 0 chr15 68089732 68089774 -17605980 - L2 LINE L2 -19 3253 3212 371 285 54 41 chr15 68089974 68090195 -17605559 - L1MC5 LINE L1 -75 7886 7663 2358 80 0 0 chr15 68090211 68090510 -17605244 - AluSc SINE Alu -9 300 2 22 0 0 0 chr15 68091074 68091096 -17604658 + AT_rich Low_complexity Low_complexity 1 22 0 1657 162 0 28 chr15 68091384 68091674 -17604080 + AluJo SINE Alu 1 282 -30 207 69 0 0 chr15 68091679 68091708 -17604046 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2069 116 59 3 chr15 68091756 68092076 -17603678 - MER44D DNA MER2_type -1 608 1 1643 141 15 4 chr15 68092583 68092845 -17602909 + AluJo SINE Alu 3 267 -45 1270 159 13 21 chr15 68092950 68093018 -17602736 + AluSq SINE Alu 70 137 -176 2246 80 3 3 chr15 68093018 68093317 -17602437 + AluSc SINE Alu 1 299 -10 1270 159 13 21 chr15 68093317 68093487 -17602267 + AluSq SINE Alu 137 306 -7 362 194 114 127 chr15 68093487 68093540 -17602214 - L1ME4a LINE L1 -253 5868 5816 814 149 0 8 chr15 68093540 68093674 -17602080 + FLAM_C SINE Alu 1 133 0 362 194 114 127 chr15 68093674 68093729 -17602025 - L1ME4a LINE L1 -305 5816 5762 2110 94 7 0 chr15 68093729 68094016 -17601738 + AluSq SINE Alu 6 294 -19 362 194 114 127 chr15 68094016 68094143 -17601611 - L1ME4a LINE L1 -359 5762 5635 267 339 55 31 chr15 68094166 68094293 -17601461 + L3 LINE CR1 1445 1574 -3 23 68 0 0 chr15 68095199 68095243 -17600511 + GC_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 68095875 68095924 -17599830 + GC_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 68096004 68096032 -17599722 + GC_rich Low_complexity Low_complexity 1 28 0 367 231 91 85 chr15 68096282 68096481 -17599273 + MIR SINE MIR 63 262 0 2219 63 0 0 chr15 68097362 68097647 -17598107 + AluY SINE Alu 27 311 0 1094 155 74 129 chr15 68097755 68098064 -17597690 + AluJb SINE Alu 6 297 -15 245 340 19 45 chr15 68098084 68098240 -17597514 - L2 LINE L2 -662 2652 2501 1480 188 102 12 chr15 68099562 68099897 -17595857 - MLT1A1 LTR MaLR 0 365 1 843 115 0 0 chr15 68100130 68100252 -17595502 + AluSp/q SINE Alu 181 302 -11 294 179 128 0 chr15 68100261 68100339 -17595415 + L1ME LINE L1 4184 4271 -1875 1008 50 0 0 chr15 68100340 68100459 -17595295 + AluY SINE Alu 1 119 -192 210 37 0 0 chr15 68100459 68100486 -17595268 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2247 215 39 33 chr15 68100486 68101071 -17594683 + L1ME LINE L1 4258 4849 -1297 2152 107 0 3 chr15 68101071 68101371 -17594383 - AluSx SINE Alu -13 299 1 2247 215 39 33 chr15 68101371 68101423 -17594331 + L1ME LINE L1 4849 4899 -1247 408 269 58 54 chr15 68101430 68101653 -17594101 + L1M4 LINE L1 2558 2781 -3365 268 255 81 66 chr15 68101669 68101966 -17593788 + L1M4 LINE L1 2913 3217 -2929 2282 95 0 0 chr15 68101966 68102271 -17593483 + AluSq SINE Alu 1 305 -8 268 255 81 66 chr15 68102271 68102306 -17593448 + L1M4 LINE L1 3217 3250 -2896 569 238 103 11 chr15 68102384 68102569 -17593185 - L1M4 LINE L1 -1197 4949 4748 730 98 0 0 chr15 68102723 68102825 -17592929 - AluSg/x SINE Alu -3 306 205 22 0 0 0 chr15 68102939 68102961 -17592793 + AT_rich Low_complexity Low_complexity 1 22 0 450 269 103 9 chr15 68103545 68103768 -17591986 + L1ME LINE L1 5562 5805 -316 31 0 0 0 chr15 68103916 68103947 -17591807 + AT_rich Low_complexity Low_complexity 1 31 0 1613 148 4 7 chr15 68104920 68105190 -17590564 - AluSx SINE Alu -43 269 1 1788 199 49 60 chr15 68105249 68105817 -17589937 + L1M4 LINE L1 4407 4968 -1178 237 176 128 0 chr15 68105885 68105987 -17589767 - L1M4 LINE L1 -2900 3246 3132 320 272 140 0 chr15 68106304 68106440 -17589314 - MLT1H LTR MaLR -13 536 382 362 261 58 29 chr15 68106595 68106733 -17589021 - MLT1I LTR MaLR -267 142 1 1534 238 78 28 chr15 68106737 68107161 -17588593 - MLT1J LTR MaLR -66 445 1 688 270 138 51 chr15 68107162 68107205 -17588549 - L1ME LINE L1 -397 5765 5727 1848 138 0 3 chr15 68107205 68107495 -17588259 - AluSq SINE Alu -24 289 1 688 270 138 51 chr15 68107495 68107843 -17587911 - L1ME LINE L1 -435 5727 5340 460 214 24 0 chr15 68107845 68107971 -17587783 + CT-rich Low_complexity Low_complexity 1 129 0 882 162 11 32 chr15 68107982 68108167 -17587587 - FRAM SINE Alu -3 173 1 457 235 10 66 chr15 68108172 68108368 -17587386 - L1ME LINE L1 -856 5290 5106 1777 147 0 3 chr15 68108522 68108829 -17586925 - AluJb SINE Alu 0 306 1 247 125 78 31 chr15 68108837 68108901 -17586853 - L1 LINE L1 -1149 5233 5167 189 0 0 0 chr15 68108942 68108963 -17586791 + (TC)n Simple_repeat Simple_repeat 2 22 0 1685 163 18 0 chr15 68108964 68109241 -17586513 - AluJo SINE Alu -30 282 1 348 271 40 35 chr15 68109409 68109608 -17586146 - L1 LINE L1 -1334 5048 4849 236 287 105 61 chr15 68109636 68109817 -17585937 - L1MC4 LINE L1 -1026 7016 6828 1616 171 7 16 chr15 68110080 68110384 -17585370 - AluJb SINE Alu -11 301 1 608 339 94 0 chr15 68110515 68110792 -17584962 - HsTC2 DNA Tc2 -1034 864 562 338 165 119 101 chr15 68110857 68110966 -17584788 + MLT1L LTR MaLR 152 262 -353 392 283 56 44 chr15 68111031 68111211 -17584543 + MLT1L LTR MaLR 426 607 -8 230 304 25 13 chr15 68111216 68111295 -17584459 - HsTC2 DNA Tc2 -1341 557 478 818 245 32 5 chr15 68113002 68113190 -17582564 - MER58A DNA MER1_type -31 193 1 2072 82 37 3 chr15 68113212 68113506 -17582248 - AluY SINE Alu -7 304 1 1202 153 67 18 chr15 68114103 68114326 -17581428 - MER46A DNA MER2_type 0 236 3 278 279 66 16 chr15 68114358 68114541 -17581213 - L1ME LINE L1 -317 5804 5613 968 226 82 90 chr15 68114849 68115362 -17580392 + L1MC4 LINE L1 7530 8038 -4 844 257 0 8 chr15 68116058 68116299 -17579455 + L1M4 LINE L1 3341 3579 -2567 717 167 28 28 chr15 68116307 68116451 -17579303 + L1M4 LINE L1 4843 4986 -1160 3798 231 94 31 chr15 68116838 68116950 -17578804 - L1M4c LINE L1 -2819 3563 3460 1916 153 0 10 chr15 68116950 68117263 -17578491 - AluJb SINE Alu -2 310 1 3798 231 94 31 chr15 68117263 68117319 -17578435 - L1M4c LINE L1 -2922 3460 3409 2023 109 10 13 chr15 68117319 68117621 -17578133 - AluSx SINE Alu -11 301 1 3798 231 94 31 chr15 68117621 68120136 -17575618 - L1M4c LINE L1 -2973 3409 566 226 314 0 14 chr15 68120268 68120338 -17575416 - L1M4c LINE L1 -6029 355 287 242 346 7 15 chr15 68120452 68120588 -17575166 - L1M4c LINE L1 -6218 166 32 2240 241 55 19 chr15 68120603 68121440 -17574314 - L1M4c LINE L1 -4197 2207 1207 525 90 13 0 chr15 68121540 68121618 -17574136 + AluSp/q SINE Alu 219 297 -16 266 293 0 0 chr15 68121620 68121695 -17574059 - MER113 DNA MER1_type? -414 107 33 2069 111 3 0 chr15 68122384 68122672 -17573082 - AluSx SINE Alu -23 289 1 1935 193 15 15 chr15 68122765 68123154 -17572600 - MLT1B LTR MaLR 0 390 2 1785 133 0 56 chr15 68123167 68123489 -17572265 - AluSx SINE Alu -8 304 1 1016 233 45 5 chr15 68123612 68123835 -17571919 + MIR SINE MIR 1 232 -30 220 146 24 0 chr15 68123848 68123889 -17571865 + (TTA)n Simple_repeat Simple_repeat 1 42 0 43351 32 28 1 chr15 68123890 68129873 -17565881 - L1PA3 LINE L1 -4 6151 6 2170 101 0 0 chr15 68129887 68130175 -17565579 - AluSx SINE Alu -24 288 1 901 85 15 8 chr15 68130592 68130722 -17565032 + AluSp/q SINE Alu 154 284 -29 262 365 0 19 chr15 68131178 68131282 -17564472 - L2 LINE L2 -201 3071 2970 683 159 71 24 chr15 68131902 68132028 -17563726 - FLAM_A SINE Alu 0 133 2 7042 251 138 20 chr15 68132508 68135466 -17560288 + L2 LINE L2 7 3313 0 180 111 0 0 chr15 68135492 68135519 -17560235 + (TA)n Simple_repeat Simple_repeat 2 28 0 483 273 131 20 chr15 68136368 68136566 -17559188 - MIR SINE MIR -34 228 9 256 230 92 23 chr15 68136580 68136667 -17559087 - MIR3 SINE MIR -103 105 13 23 33 0 0 chr15 68137611 68137641 -17558113 + AT_rich Low_complexity Low_complexity 1 30 0 1833 127 3 42 chr15 68137877 68138184 -17557570 + AluJb SINE Alu 1 295 -17 2055 127 0 0 chr15 68139524 68139823 -17555931 - AluSx SINE Alu -13 299 1 345 351 119 32 chr15 68139978 68140399 -17555355 + L2 LINE L2 2597 3055 -258 223 218 77 77 chr15 68140436 68140514 -17555240 - L2 LINE L2 -10 3303 3226 205 349 72 13 chr15 68140647 68140799 -17554955 - MIR3 SINE MIR -8 200 40 1827 157 7 13 chr15 68140813 68141113 -17554641 - AluJb SINE Alu -14 298 1 1803 121 7 28 chr15 68141541 68141830 -17553924 + AluSq SINE Alu 1 283 -30 1633 173 11 0 chr15 68141906 68142178 -17553576 - MSTC LTR MaLR 0 428 154 336 26 0 0 chr15 68142175 68142213 -17553541 - MSTC LTR MaLR -390 38 1 * 2240 67 0 0 chr15 68142239 68142521 -17553233 + AluSx SINE Alu 21 302 -10 314 211 295 0 chr15 68142631 68142726 -17553028 + L2 LINE L2 3187 3309 -4 224 245 19 0 chr15 68143133 68143186 -17552568 - MIR3 SINE MIR -18 190 137 216 240 0 20 chr15 68143195 68143245 -17552509 + GA-rich Low_complexity Low_complexity 2 50 0 481 290 189 35 chr15 68143645 68143955 -17551799 + L2 LINE L2 2708 2969 -344 2225 103 0 7 chr15 68143955 68144265 -17551489 + AluSx SINE Alu 2 309 -3 481 290 189 35 chr15 68144265 68144480 -17551274 + L2 LINE L2 2969 3312 -1 1571 130 74 11 chr15 68144661 68144945 -17550809 + AluSx SINE Alu 1 302 -10 186 143 0 0 chr15 68144945 68144980 -17550774 + (TA)n Simple_repeat Simple_repeat 2 36 0 2654 192 22 48 chr15 68145091 68145320 -17550434 + L1M4 LINE L1 2376 2609 -3537 2323 89 0 0 chr15 68145320 68145622 -17550132 + AluSx SINE Alu 1 302 -10 2654 192 22 48 chr15 68145622 68146079 -17549675 + L1M4 LINE L1 2609 3044 -3102 1643 183 0 10 chr15 68146082 68146410 -17549344 + AluJb SINE Alu 1 312 0 268 214 10 10 chr15 68146410 68146508 -17549246 + (TA)n Simple_repeat Simple_repeat 1 98 0 2023 85 0 4 chr15 68146545 68146817 -17548937 + AluY SINE Alu 24 294 -17 1508 243 44 11 chr15 68146822 68147255 -17548499 + L1M4 LINE L1 4414 4860 -1286 23 33 0 0 chr15 68147327 68147357 -17548397 + AT_rich Low_complexity Low_complexity 1 30 0 2196 112 0 0 chr15 68147397 68147710 -17548044 - AluSq SINE Alu 0 313 1 2183 113 0 0 chr15 68147714 68148015 -17547739 - AluSx SINE Alu -11 301 1 2190 89 3 0 chr15 68148018 68148309 -17547445 - AluSp SINE Alu -12 301 10 2483 49 16 0 chr15 68148920 68149226 -17546528 - AluY SINE Alu 0 311 1 266 221 132 29 chr15 68149616 68149752 -17546002 + L2 LINE L2 1280 1429 -1885 940 285 146 37 chr15 68149756 68150297 -17545457 + L2 LINE L2 150 749 -2565 390 155 0 14 chr15 68150299 68150370 -17545384 + MLT1J LTR MaLR 109 178 -333 346 182 0 15 chr15 68150670 68150736 -17545018 + MLT1J LTR MaLR 1 65 -446 623 253 44 101 chr15 68150791 68151199 -17544555 + L2 LINE L2 1606 1990 -1324 2105 108 3 13 chr15 68151266 68151571 -17544183 + AluSq SINE Alu 1 302 -11 2174 101 0 7 chr15 68151573 68151879 -17543875 + AluSc SINE Alu 4 307 -2 422 284 44 16 chr15 68151881 68152064 -17543690 - L1MC5 LINE L1 -68 7893 7706 2343 129 17 0 chr15 68152145 68152502 -17543252 - L1PA16 LINE L1 -9 6157 5795 283 228 11 43 chr15 68152502 68152565 -17543189 + L2 LINE L2 1985 2046 -1268 1833 184 30 30 chr15 68152565 68152784 -17542970 - MLT1A1 LTR MaLR 0 365 144 1545 179 10 27 chr15 68152784 68153080 -17542674 - AluJo SINE Alu -16 296 6 1833 184 30 30 chr15 68153080 68153225 -17542529 - MLT1A1 LTR MaLR -220 145 1 283 228 11 43 chr15 68153225 68153253 -17542501 + L2 LINE L2 2046 2073 -1241 665 239 130 76 chr15 68153260 68153359 -17542395 + L2 LINE L2 2186 2278 -1036 2068 128 0 0 chr15 68153359 68153656 -17542098 - AluSx SINE Alu -15 297 1 665 239 130 76 chr15 68153656 68153949 -17541805 + L2 LINE L2 2278 2599 -715 442 158 128 30 chr15 68154042 68154175 -17541579 - Charlie7 DNA MER1_type -50 2562 2417 * 1299 226 35 80 chr15 68154167 68154523 -17541231 - Charlie7 DNA MER1_type -1890 722 392 2434 80 3 0 chr15 68154523 68154835 -17540919 - AluSp SINE Alu 0 313 1 1299 226 35 80 chr15 68154835 68154965 -17540789 - Charlie7 DNA MER1_type -2220 392 258 321 234 19 47 chr15 68154959 68155066 -17540688 - Charlie7 DNA MER1_type -2502 110 7 * 605 291 36 30 chr15 68155093 68155503 -17540251 + L2 LINE L2 2626 3030 -242 434 132 40 0 chr15 68155900 68155976 -17539778 - AluSp/q SINE Alu 0 313 235 274 211 44 22 chr15 68158101 68158191 -17537563 + GA-rich Low_complexity Low_complexity 4 95 0 386 261 74 56 chr15 68158742 68158957 -17536797 + MER20 DNA MER1_type 1 219 0 225 346 119 49 chr15 68159064 68159249 -17536505 + L2 LINE L2 3107 3304 -9 411 106 0 0 chr15 68159788 68159854 -17535900 + (CTG)n Simple_repeat Simple_repeat 3 68 0 237 269 118 17 chr15 68159985 68160104 -17535650 + MIR3 SINE MIR 27 157 -51 286 289 24 0 chr15 68160183 68160266 -17535488 - MIR SINE MIR -4 258 174 380 322 109 22 chr15 68160347 68160577 -17535177 + MIR SINE MIR 13 262 0 22 70 0 0 chr15 68160715 68160758 -17534996 + GC_rich Low_complexity Low_complexity 1 43 0 505 113 0 0 chr15 68161285 68161356 -17534398 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 1207 221 166 0 chr15 68162447 68162796 -17532958 + Charlie4a DNA MER1_type 32 438 -70 255 70 163 0 chr15 68162796 68162839 -17532915 + L1PB2 LINE L1 6100 6149 -2 1833 141 0 46 chr15 68162890 68163217 -17532537 + AluSx SINE Alu 1 312 0 1966 123 7 0 chr15 68163716 68164017 -17531737 - AluSx SINE Alu -9 303 1 823 257 27 0 chr15 68164174 68164361 -17531393 - MIR SINE MIR -22 240 49 385 250 34 0 chr15 68164680 68164768 -17530986 - MIR SINE MIR -48 214 124 1088 184 113 46 chr15 68164807 68165089 -17530665 + AluJo SINE Alu 7 307 -5 298 167 0 30 chr15 68165455 68165521 -17530233 - L1MC5 LINE L1 -292 7669 7606 259 234 0 16 chr15 68165533 68165597 -17530157 + MLT1K LTR MaLR 523 585 -3 341 158 53 18 chr15 68165868 68165982 -17529772 + (TA)n Simple_repeat Simple_repeat 2 119 0 1382 154 147 11 chr15 68166367 68166633 -17529121 + AluSx SINE Alu 1 302 0 765 136 32 0 chr15 68166648 68166773 -17528981 + AluJb SINE Alu 3 131 -181 529 232 113 54 chr15 68168281 68168466 -17527288 + L2 LINE L2 3072 3267 -5 273 119 0 119 chr15 68168570 68168581 -17527173 - FAM SINE Alu -140 171 160 2325 87 0 10 chr15 68168581 68168893 -17526861 - AluSx SINE Alu -3 309 1 273 119 0 119 chr15 68168893 68168948 -17526806 - FAM SINE Alu -151 160 119 907 170 5 37 chr15 68168952 68169140 -17526614 - AluJo SINE Alu -130 182 1 261 264 14 14 chr15 68169439 68169511 -17526243 - LTR67 LTR ERVL -392 165 94 193 321 71 0 chr15 68169678 68169762 -17525992 + L2 LINE L2 3168 3257 -15 2109 106 7 3 chr15 68169833 68170125 -17525629 - AluSg SINE Alu -16 294 2 900 119 0 37 chr15 68170174 68170308 -17525446 - FLAM_C SINE Alu -4 129 1 32 0 0 0 chr15 68171375 68171407 -17524347 + AT_rich Low_complexity Low_complexity 1 32 0 1717 160 0 32 chr15 68171446 68171758 -17523996 + AluJo SINE Alu 7 308 -4 2060 133 0 0 chr15 68171871 68172172 -17523582 - AluSx SINE Alu -11 301 1 2921 196 16 2 chr15 68172300 68172914 -17522840 + MER82 DNA MER2_type 1 653 0 2203 105 0 10 chr15 68173024 68173329 -17522425 + AluSc SINE Alu 1 302 -7 212 331 102 31 chr15 68173591 68173718 -17522036 - MIR SINE MIR -113 149 14 475 296 53 13 chr15 68173872 68174024 -17521730 + MIR SINE MIR 49 206 -56 213 349 0 0 chr15 68174311 68174377 -17521377 - MIR3 SINE MIR -19 189 124 576 267 127 12 chr15 68175404 68175621 -17520133 + MIR SINE MIR 21 262 0 201 176 0 0 chr15 68175621 68175655 -17520099 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2124 115 0 34 chr15 68175710 68176033 -17519721 + AluSx SINE Alu 1 312 0 321 230 0 0 chr15 68176154 68176228 -17519526 - L1ME4a LINE L1 -61 6060 5987 1587 133 0 50 chr15 68177213 68177514 -17518240 + MLT1B LTR MaLR 3 288 -102 2006 102 14 14 chr15 68177532 68177826 -17517928 - AluSx SINE Alu -18 294 1 1797 147 37 4 chr15 68178016 68178316 -17517438 - AluSx SINE Alu 0 309 1 1492 151 36 29 chr15 68178330 68178609 -17517145 - AluJo SINE Alu -11 301 21 257 200 0 86 chr15 68178729 68178799 -17516955 + MER91 DNA MER1_type 77 140 0 279 303 17 59 chr15 68179231 68179350 -17516404 - L3 LINE CR1 -88 1489 1376 510 274 33 79 chr15 68179370 68179510 -17516244 - MIR SINE MIR -3 259 131 2405 81 0 25 chr15 68179510 68179830 -17515924 + AluSx SINE Alu 1 312 0 510 274 33 79 chr15 68179830 68179904 -17515850 - MIR SINE MIR -131 131 55 233 91 0 68 chr15 68180282 68180326 -17515428 - MLT2D LTR ERVL -7 407 367 357 109 0 0 chr15 68180327 68180382 -17515372 + (TG)n Simple_repeat Simple_repeat 2 56 0 267 54 0 0 chr15 68180400 68180437 -17515317 + (GA)n Simple_repeat Simple_repeat 2 38 0 1380 190 23 8 chr15 68180438 68180767 -17514987 - MLT2D LTR ERVL -48 349 1 289 344 79 35 chr15 68180824 68181026 -17514728 - L3 LINE CR1 -255 1322 1107 1848 127 65 0 chr15 68181026 68181301 -17514453 - AluSx SINE Alu -19 293 1 289 344 79 35 chr15 68181301 68181325 -17514429 - L3 LINE CR1 -470 1107 1086 843 259 92 19 chr15 68181325 68181698 -17514056 - LTR16A1 LTR ERVL -2 455 75 2348 72 6 28 chr15 68181838 68182157 -17513597 - AluSx SINE Alu 0 312 1 235 318 66 0 chr15 68182267 68182418 -17513336 - LTR67 LTR ERVL -2 555 395 2292 98 0 0 chr15 68182555 68182852 -17512902 + AluSx SINE Alu 3 299 -13 213 299 31 52 chr15 68183093 68183190 -17512564 - L3 LINE CR1 -582 995 901 240 358 42 0 chr15 68183393 68183488 -17512266 - L2 LINE L2 -49 3223 3125 230 53 105 0 chr15 68183495 68183533 -17512221 + AluSg/x SINE Alu 138 179 -124 214 362 39 39 chr15 68183545 68183672 -17512082 - L2 LINE L2 -490 2824 2698 852 121 0 0 chr15 68183672 68183796 -17511958 + AluSg/x SINE Alu 189 312 0 343 131 0 0 chr15 68183887 68183948 -17511806 - AluSc SINE Alu -4 295 235 609 320 126 4 chr15 68183967 68184198 -17511556 + MIR SINE MIR 2 260 -2 384 330 113 32 chr15 68185028 68185401 -17510353 - L2 LINE L2 -337 2977 2575 361 302 88 22 chr15 68185387 68185569 -17510185 + MIR SINE MIR 34 227 -35 * 21 36 0 0 chr15 68186555 68186583 -17509171 + GC_rich Low_complexity Low_complexity 1 28 0 210 71 0 0 chr15 68188262 68188290 -17507464 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr15 68195572 68195607 -17500147 + GC_rich Low_complexity Low_complexity 1 35 0 329 264 96 62 chr15 68196867 68197045 -17498709 - MIR3 SINE MIR -10 198 15 238 419 44 0 chr15 68198440 68198576 -17497178 - MIR3 SINE MIR -14 194 53 25 0 0 0 chr15 68198946 68198971 -17496783 + GC_rich Low_complexity Low_complexity 1 25 0 226 281 70 0 chr15 68199832 68199889 -17495865 + MIR SINE MIR 85 145 -63 220 286 11 22 chr15 68201072 68201163 -17494591 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 200 146 0 21 chr15 68202027 68202075 -17493679 + (GA)n Simple_repeat Simple_repeat 1 47 0 754 214 94 9 chr15 68202543 68202767 -17492987 - L1ME2 LINE L1 -8 6156 5914 411 21 0 0 chr15 68203676 68203724 -17492030 + (TA)n Simple_repeat Simple_repeat 2 49 0 353 212 150 18 chr15 68204438 68204551 -17491203 + MIR SINE MIR 135 262 0 246 297 119 38 chr15 68204796 68204981 -17490773 + L3 LINE CR1 1230 1429 -148 23 0 0 0 chr15 68206255 68206278 -17489476 + GC_rich Low_complexity Low_complexity 1 23 0 198 333 14 0 chr15 68207371 68207440 -17488314 - MIR SINE MIR -177 85 16 567 237 46 13 chr15 68207759 68207911 -17487843 - MIR3 SINE MIR -38 170 14 290 232 14 0 chr15 68210418 68210487 -17485267 + Charlie5 DNA MER1_type 1 70 -2542 * 403 192 169 0 chr15 68210486 68210616 -17485138 + Charlie5 DNA MER1_type 2470 2621 0 204 250 47 0 chr15 68211572 68211636 -17484118 - MIR SINE MIR -12 250 184 240 189 75 0 chr15 68212556 68212609 -17483145 + MIR SINE MIR 111 167 -95 335 268 62 0 chr15 68213349 68213446 -17482308 - L2 LINE L2 0 3313 3211 1733 117 28 92 chr15 68213760 68214085 -17481669 - AluJo SINE Alu -6 306 3 982 122 7 0 chr15 68215523 68215662 -17480092 + FRAM SINE Alu 16 155 -21 406 151 14 0 chr15 68215720 68215793 -17479961 - MER116 DNA Mariner -2 78 5 258 32 0 0 chr15 68216539 68216570 -17479184 + (TG)n Simple_repeat Simple_repeat 2 32 0 351 336 7 36 chr15 68218045 68218182 -17477572 + MIR3 SINE MIR 66 198 -10 207 246 0 72 chr15 68218992 68219061 -17476693 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 283 306 76 25 chr15 68219953 68220110 -17475644 + MIR SINE MIR 21 185 -77 349 272 143 14 chr15 68221036 68221128 -17474626 + MIR3 SINE MIR 33 112 -96 1207 200 97 21 chr15 68221128 68221418 -17474336 + AluJo SINE Alu 1 312 0 349 272 143 14 chr15 68221418 68221472 -17474282 + MIR3 SINE MIR 112 198 -10 462 287 40 13 chr15 68222003 68222153 -17473601 + MIR SINE MIR 63 216 -46 184 370 65 13 chr15 68222408 68222562 -17473192 - MIR SINE MIR -54 208 47 466 298 148 30 chr15 68223670 68224036 -17471718 + L1MC4a LINE L1 5517 5925 -1883 681 291 16 11 chr15 68225154 68225343 -17470411 - MIR SINE MIR -57 205 16 371 267 108 8 chr15 68226219 68226339 -17469415 - MIR SINE MIR -70 192 61 371 212 61 76 chr15 68226489 68226621 -17469133 - MIR SINE MIR -16 246 117 246 32 0 0 chr15 68227554 68227585 -17468169 + (CCCCG)n Simple_repeat Simple_repeat 1 31 0 334 202 174 28 chr15 68229673 68229782 -17465972 - MIR SINE MIR -56 206 82 248 311 176 0 chr15 68230002 68230121 -17465633 + MIR SINE MIR 53 192 -70 566 155 10 0 chr15 68230679 68230776 -17464978 - L2 LINE L2 -18 3295 3198 414 0 0 0 chr15 68230776 68230822 -17464932 + (TG)n Simple_repeat Simple_repeat 2 47 0 599 154 21 49 chr15 68231289 68231432 -17464322 - MIR SINE MIR -123 139 1 232 273 157 16 chr15 68231564 68231685 -17464069 - MIR3 SINE MIR -32 176 39 202 273 71 40 chr15 68232204 68232303 -17463451 + MIR SINE MIR 28 129 -133 396 0 0 0 chr15 68235458 68235502 -17460252 + (CA)n Simple_repeat Simple_repeat 2 45 0 406 219 57 8 chr15 68239430 68239553 -17456201 - MIR3 SINE MIR -17 191 63 193 294 0 0 chr15 68239590 68239641 -17456113 + MIR3 SINE MIR 110 160 -48 528 45 0 0 chr15 68240236 68240303 -17455451 + (GA)n Simple_repeat Simple_repeat 2 68 0 261 0 0 0 chr15 68241258 68241287 -17454467 + (CA)n Simple_repeat Simple_repeat 1 29 0 182 390 9 9 chr15 68241924 68242029 -17453725 + L3 LINE CR1 1408 1512 -65 * 347 282 90 58 chr15 68242018 68242206 -17453548 - L2 LINE L2 -4 3268 3075 2155 135 6 3 chr15 68242312 68242623 -17453131 - AluSx SINE Alu 0 312 1 203 296 19 0 chr15 68242646 68242700 -17453054 + L3 LINE CR1 1512 1566 -11 474 18 0 0 chr15 68243336 68243391 -17452363 + (TA)n Simple_repeat Simple_repeat 1 55 0 701 258 104 5 chr15 68243413 68243634 -17452120 + MIR SINE MIR 1 243 -19 219 146 0 0 chr15 68244585 68244626 -17451128 + (TATG)n Simple_repeat Simple_repeat 1 41 0 182 301 24 24 chr15 68244997 68245080 -17450674 + MIR SINE MIR 30 112 -150 190 307 102 22 chr15 68245652 68245789 -17449965 - MIR SINE MIR -20 242 95 22 0 0 0 chr15 68245907 68245929 -17449825 + AT_rich Low_complexity Low_complexity 1 22 0 590 139 0 43 chr15 68246617 68246719 -17449035 + FRAM SINE Alu 66 164 -148 2517 58 3 13 chr15 68246719 68247030 -17448724 + AluY SINE Alu 1 308 -3 590 139 0 43 chr15 68247030 68247042 -17448712 + FRAM SINE Alu 164 175 -1 960 264 102 73 chr15 68247653 68248293 -17447461 + L2 LINE L2 2379 3032 -240 2252 83 0 83 chr15 68248293 68248630 -17447124 + AluSc SINE Alu 1 309 0 960 264 102 73 chr15 68248630 68248875 -17446879 + L2 LINE L2 3032 3268 -4 550 286 29 46 chr15 68248874 68249112 -17446642 - MIR SINE MIR -15 247 14 * 216 235 111 37 chr15 68250249 68250330 -17445424 + L2 LINE L2 3184 3270 -2 240 214 18 18 chr15 68251721 68251777 -17443977 - MER115 DNA AcHobo -7 686 631 * 797 288 148 18 chr15 68251767 68252045 -17443709 - MER115 DNA AcHobo -265 428 115 2425 150 14 48 chr15 68252203 68252336 -17443418 + L1MB2 LINE L1 5652 5788 -383 2268 102 3 10 chr15 68252336 68252629 -17443125 + AluSc SINE Alu 1 291 -18 2425 150 14 48 chr15 68252629 68252812 -17442942 + L1MB2 LINE L1 5788 5947 -224 2227 128 0 0 chr15 68252812 68253110 -17442644 + AluSx SINE Alu 1 298 -14 2425 150 14 48 chr15 68253110 68253293 -17442461 + L1MB2 LINE L1 5947 6135 -36 203 278 14 28 chr15 68253402 68253474 -17442280 + L2 LINE L2 3232 3302 -11 3397 104 8 6 chr15 68253489 68253999 -17441755 + MER9 LTR ERVK 1 511 0 4124 93 16 20 chr15 68253999 68254612 -17441142 + HERVK9 LTR ERVK 1 611 -5305 31608 85 6 2 chr15 68254613 68256808 -17438946 + HERVK9 LTR ERVK 1348 3567 -2349 2477 59 0 30 chr15 68256808 68257111 -17438643 - AluY SINE Alu -17 294 1 31608 85 6 2 chr15 68257111 68259187 -17436567 + HERVK9 LTR ERVK 3567 5634 -282 2041 143 4 3 chr15 68259228 68259563 -17436191 + HERVK9 LTR ERVK 4922 5914 -2 3330 108 12 10 chr15 68259566 68260076 -17435678 + MER9 LTR ERVK 1 511 0 2249 86 4 4 chr15 68260076 68260355 -17435399 - AluSc SINE Alu -30 279 1 1065 98 0 0 chr15 68260721 68260853 -17434901 - AluY SINE Alu -179 132 1 518 128 0 0 chr15 68260856 68260942 -17434812 - AluS SINE Alu 0 312 227 1236 185 45 25 chr15 68260942 68260989 -17434765 + L1MC4 LINE L1 6265 6310 -49 1495 173 148 6 chr15 68260989 68261307 -17434447 - MLT1A1 LTR MaLR -2 363 1 1236 185 45 25 chr15 68261307 68261543 -17434211 + L1MC4 LINE L1 6310 6359 0 250 284 54 54 chr15 68261690 68261912 -17433842 + L2 LINE L2 700 921 -2393 2393 87 0 19 chr15 68261947 68262293 -17433461 - AluSc SINE Alu 0 340 1 2327 112 0 0 chr15 68262308 68262612 -17433142 - AluSg SINE Alu -6 304 1 1712 174 29 0 chr15 68262618 68262899 -17432855 - AluJo SINE Alu -18 294 6 278 365 95 0 chr15 68263546 68263735 -17432019 + L2 LINE L2 1690 1896 -1418 1205 96 0 0 chr15 68263750 68263907 -17431847 - AluSx SINE Alu -2 310 154 949 183 18 0 chr15 68263939 68264103 -17431651 - AluJo SINE Alu -97 215 49 * 1224 75 0 0 chr15 68264102 68264248 -17431506 - AluSx SINE Alu -166 146 1 333 253 13 0 chr15 68264331 68264406 -17431348 + L2 LINE L2 3185 3260 -12 438 200 67 60 chr15 68264848 68264878 -17430876 + MER103 DNA DNA 15 43 -123 1699 199 10 0 chr15 68264878 68265175 -17430579 - AluJo SINE Alu -12 300 1 438 200 67 60 chr15 68265175 68265294 -17430460 + MER103 DNA DNA 43 165 -1 385 286 150 0 chr15 68265379 68265512 -17430242 + L2 LINE L2 3116 3268 -4 2254 108 3 0 chr15 68265577 68265873 -17429881 + AluSx SINE Alu 1 297 -15 319 315 67 3 chr15 68266587 68266764 -17428990 + MIR3 SINE MIR 63 258 -4 2169 136 25 3 chr15 68267257 68267611 -17428143 - MLT1B LTR MaLR 0 390 29 189 227 23 0 chr15 68267652 68267696 -17428058 - MIR SINE MIR -65 143 99 522 0 0 0 chr15 68267983 68268041 -17427713 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 982 167 13 0 chr15 68268046 68268202 -17427552 - FAM SINE Alu -19 166 9 375 43 0 0 chr15 68268227 68268274 -17427480 + MLT1B LTR MaLR 100 146 -244 386 261 0 0 chr15 68268280 68268372 -17427382 - MER5A DNA MER1_type -84 105 14 1008 163 121 39 chr15 68268411 68268469 -17427285 - Charlie5 DNA MER1_type -32 2592 2540 1628 179 0 55 chr15 68268469 68268614 -17427140 + AluJo SINE Alu 1 123 -189 2312 77 0 14 chr15 68268614 68268924 -17426830 + AluSx SINE Alu 1 306 0 1628 179 0 55 chr15 68268924 68269089 -17426665 + AluJo SINE Alu 123 295 -17 1699 192 0 35 chr15 68269092 68269233 -17426521 + AluJo SINE Alu 1 145 -167 2273 103 10 0 chr15 68269233 68269524 -17426230 + AluSx SINE Alu 1 294 -18 1699 192 0 35 chr15 68269524 68269695 -17426059 + AluJo SINE Alu 145 302 -10 351 0 0 0 chr15 68269701 68269740 -17426014 + (TG)n Simple_repeat Simple_repeat 2 40 0 1921 137 4 0 chr15 68269741 68270011 -17425743 - AluSx SINE Alu -21 291 21 1008 163 121 39 chr15 68270011 68270271 -17425483 - Charlie5 DNA MER1_type -88 2536 2234 34 42 0 0 chr15 68270272 68270320 -17425434 + AT_rich Low_complexity Low_complexity 1 48 0 2200 100 4 0 chr15 68270324 68270603 -17425151 + AluSx SINE Alu 1 280 -32 23 0 0 0 chr15 68270649 68270672 -17425082 + AT_rich Low_complexity Low_complexity 1 23 0 333 347 20 0 chr15 68271069 68271219 -17424535 + L3 LINE CR1 1259 1411 -166 313 336 119 21 chr15 68271410 68271645 -17424109 - MIR SINE MIR -3 259 2 484 116 0 12 chr15 68272410 68272496 -17423258 + MER53 DNA DNA 9 93 -96 2446 75 0 3 chr15 68272503 68272795 -17422959 + AluSq SINE Alu 14 304 -9 696 253 41 0 chr15 68273385 68273555 -17422199 - MIR SINE MIR -39 223 47 261 222 9 17 chr15 68273624 68273696 -17422058 + MIR SINE MIR 12 86 -122 253 207 50 116 chr15 68273758 68273879 -17421875 + L3 LINE CR1 1188 1300 -277 424 267 73 27 chr15 68274042 68274223 -17421531 + MIR SINE MIR 31 218 -44 563 273 16 16 chr15 68274494 68274681 -17421073 + MER5A DNA MER1_type 1 187 -2 234 242 16 16 chr15 68274857 68274919 -17420835 + CT-rich Low_complexity Low_complexity 4 65 0 448 331 0 0 chr15 68275559 68275680 -17420074 + MIR3 SINE MIR 38 158 -50 565 276 55 15 chr15 68276039 68276238 -17419516 + MIR SINE MIR 56 262 0 257 208 75 0 chr15 68276774 68276827 -17418927 + MIR SINE MIR 89 145 -63 2452 91 3 0 chr15 68277177 68277485 -17418269 + AluSp SINE Alu 1 309 -4 1070 275 90 10 chr15 68277585 68277985 -17417769 - L2 LINE L2 -5 3308 2877 288 180 44 182 chr15 68278307 68278495 -17417259 - MIR SINE MIR -56 206 34 2372 104 0 3 chr15 68279311 68279620 -17416134 - AluSx SINE Alu -4 308 1 490 305 32 48 chr15 68279628 68280126 -17415628 - L1M4 LINE L1 -1201 4945 4456 326 243 0 0 chr15 68280130 68280200 -17415554 + AluJ/FRAM SINE Alu 226 295 -7 637 316 32 41 chr15 68280221 68280658 -17415096 - L1M4 LINE L1 -1696 4450 4018 689 262 204 23 chr15 68280713 68280766 -17414988 - L1ME4a LINE L1 -2 6119 6077 2330 95 0 14 chr15 68280766 68281062 -17414692 + AluSx SINE Alu 1 292 -20 689 262 204 23 chr15 68281062 68281148 -17414606 - L1ME4a LINE L1 -44 6077 6008 294 95 0 0 chr15 68281148 68281190 -17414564 + (CA)n Simple_repeat Simple_repeat 1 42 0 2345 104 0 10 chr15 68281190 68281499 -17414255 - AluSq SINE Alu -7 306 1 689 262 204 23 chr15 68281499 68281784 -17413970 - L1ME4a LINE L1 -112 6009 5616 384 301 14 27 chr15 68282290 68282436 -17413318 - MIR3 SINE MIR -62 146 3 203 300 78 11 chr15 68282457 68282547 -17413207 - L3b LINE CR1 -134 1449 1354 2031 142 3 10 chr15 68284335 68284637 -17411117 - AluJo SINE Alu -12 300 1 222 253 0 0 chr15 68285147 68285230 -17410524 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 1981 142 3 0 chr15 68285530 68285812 -17409942 + AluJb SINE Alu 12 294 -18 216 244 165 12 chr15 68285894 68286058 -17409696 - L2 LINE L2 -1304 2010 1822 2401 93 3 0 chr15 68286065 68286367 -17409387 + AluSx SINE Alu 1 303 -9 2280 119 3 0 chr15 68287116 68287427 -17408327 - AluSp SINE Alu 0 313 2 2491 99 0 0 chr15 68287789 68288101 -17407653 - AluSx SINE Alu 0 312 1 193 147 0 29 chr15 68288269 68288303 -17407451 - MER5A DNA MER1_type -114 75 43 1441 167 50 57 chr15 68288324 68288606 -17407148 + AluJo SINE Alu 1 280 -32 518 0 16 0 chr15 68288606 68288668 -17407086 + (GA)n Simple_repeat Simple_repeat 2 64 0 341 318 87 9 chr15 68289257 68289321 -17406433 - MIR SINE MIR -71 191 133 243 0 0 0 chr15 68289321 68289348 -17406406 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 341 318 87 9 chr15 68289348 68289454 -17406300 - MIR SINE MIR -129 133 7 2382 84 7 0 chr15 68290490 68290787 -17404967 - AluSp SINE Alu -14 299 1 1733 170 37 0 chr15 68290910 68291204 -17404550 + AluJb SINE Alu 1 305 -7 2430 78 3 0 chr15 68292697 68292992 -17402762 - AluSq SINE Alu -17 296 1 1139 143 18 27 chr15 68293290 68293514 -17402240 + SVA Other Other 455 676 -710 21 57 0 0 chr15 68293591 68293626 -17402128 + AT_rich Low_complexity Low_complexity 1 35 0 310 250 60 0 chr15 68295112 68295196 -17400558 - MIR SINE MIR -73 135 47 342 270 79 24 chr15 68297319 68297445 -17398309 - MIR3 SINE MIR -11 197 65 450 313 0 23 chr15 68297619 68297795 -17397959 + MER5B DNA MER1_type 1 172 -6 607 159 23 159 chr15 68298817 68298986 -17396768 + MER5B DNA MER1_type 5 149 -29 555 232 181 13 chr15 68298986 68299141 -17396613 - MER5A DNA MER1_type 0 189 9 1617 95 63 5 chr15 68299354 68299576 -17396178 - AluSx SINE Alu -77 235 1 1243 137 0 22 chr15 68299667 68299850 -17395904 - AluJo/FRAM SINE Alu 0 312 134 1649 154 106 0 chr15 68299850 68300123 -17395631 - AluSx SINE Alu -10 302 1 1648 131 3 125 chr15 68300942 68301286 -17394468 + AluJo SINE Alu 1 302 0 1119 318 103 47 chr15 68301470 68301865 -17393889 + L3 LINE CR1 601 972 -605 2503 85 0 0 chr15 68301865 68302170 -17393584 + AluSg SINE Alu 1 305 -5 1119 318 103 47 chr15 68302170 68302501 -17393253 + L3 LINE CR1 972 1368 -209 580 285 97 31 chr15 68302934 68303162 -17392592 + MIR SINE MIR 16 258 -4 1787 157 0 42 chr15 68304274 68304587 -17391167 - AluJo SINE Alu -12 300 1 294 183 17 0 chr15 68304816 68304876 -17390878 - Charlie8 DNA MER1_type -1963 454 394 909 209 5 29 chr15 68304879 68305085 -17390669 - AluJb SINE Alu 0 312 112 351 302 29 22 chr15 68305224 68305363 -17390391 - Charlie8 DNA MER1_type -2194 223 84 194 262 98 16 chr15 68307425 68307486 -17388268 - MIR SINE MIR -8 254 189 2229 104 7 0 chr15 68307807 68308104 -17387650 - AluSx SINE Alu -13 299 1 378 0 0 0 chr15 68310375 68310417 -17385337 + (TA)n Simple_repeat Simple_repeat 2 43 0 919 232 48 43 chr15 68310485 68310584 -17385170 + L1MC5 LINE L1 7480 7577 -384 204 40 0 0 chr15 68310584 68310609 -17385145 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 919 232 48 43 chr15 68310609 68310901 -17384853 + L1MC5 LINE L1 7577 7873 -88 2020 135 0 22 chr15 68310989 68311301 -17384453 - AluSx SINE Alu -7 305 1 221 359 53 41 chr15 68312127 68312297 -17383457 + L3 LINE CR1 36 207 -1370 259 125 50 38 chr15 68312514 68312551 -17383203 - L1MB2 LINE L1 -7 6164 6129 2435 81 0 10 chr15 68312551 68312859 -17382895 - AluSg SINE Alu -5 305 1 259 125 50 38 chr15 68312859 68312901 -17382853 - L1MB2 LINE L1 -42 6129 6084 329 299 15 45 chr15 68312902 68313036 -17382718 - L1MB2 LINE L1 -306 5815 5698 2700 129 6 75 chr15 68314075 68314565 -17381189 - MER1A DNA MER1_type -27 502 47 330 272 0 12 chr15 68314952 68315033 -17380721 + L2 LINE L2 3199 3278 -35 376 252 0 79 chr15 68316272 68316399 -17379355 + MER5A DNA MER1_type 44 160 -29 476 217 17 61 chr15 68316525 68316640 -17379114 - MIR SINE MIR -29 233 124 204 327 45 64 chr15 68316873 68316983 -17378771 + L3b LINE CR1 1334 1441 -142 197 160 0 20 chr15 68317100 68317150 -17378604 + (TG)n Simple_repeat Simple_repeat 1 49 0 198 294 76 87 chr15 68317303 68317395 -17378359 + L3b LINE CR1 1481 1571 -12 1094 150 112 0 chr15 68318382 68318595 -17377159 + AluJb SINE Alu 82 315 0 450 295 8 8 chr15 68319327 68319449 -17376305 - MER5A DNA MER1_type -2 187 66 316 291 87 8 chr15 68319527 68319654 -17376100 - L1MC4a LINE L1 -1861 5947 5811 571 220 127 0 chr15 68319654 68319804 -17375950 - L1ME3 LINE L1 -1 6161 5993 2249 122 3 0 chr15 68320209 68320513 -17375241 - AluSx SINE Alu -7 305 1 193 294 0 20 chr15 68320926 68320977 -17374777 - MER5B DNA MER1_type -100 78 29 588 302 13 0 chr15 68321004 68321163 -17374591 + MIR SINE MIR 85 245 -17 2840 126 55 4 chr15 68321201 68321670 -17374084 + L1MB2 LINE L1 5677 6169 -2 291 130 19 37 chr15 68321722 68321776 -17373978 + MER5B DNA MER1_type 2 54 -124 229 325 0 0 chr15 68321778 68321855 -17373899 - LTR67 LTR ERVL -54 503 427 475 235 8 53 chr15 68321857 68321989 -17373765 + MER5B DNA MER1_type 31 156 -22 699 187 77 19 chr15 68322392 68322547 -17373207 + MER5A DNA MER1_type 1 164 -25 * 788 189 72 0 chr15 68322490 68322643 -17373111 - MER5A DNA MER1_type -25 164 1 2402 68 14 0 chr15 68322673 68322969 -17372785 - AluSq SINE Alu -13 300 1 933 285 55 29 chr15 68322995 68323377 -17372377 + L1MC/D LINE L1 5382 5773 -2035 2395 106 3 3 chr15 68323408 68323720 -17372034 + AluSx SINE Alu 1 312 0 328 304 122 9 chr15 68324289 68324404 -17371350 + L2 LINE L2 3145 3272 0 217 322 34 0 chr15 68324451 68324510 -17371244 - MIR SINE MIR -71 137 77 1790 143 9 70 chr15 68324685 68325014 -17370740 - AluJb SINE Alu -3 309 1 256 246 0 0 chr15 68326821 68326882 -17368872 - MER94 DNA DNA -65 69 9 933 170 104 11 chr15 68326988 68327170 -17368584 - AluJo SINE Alu -16 296 98 650 115 0 0 chr15 68327209 68327296 -17368458 - AluJb SINE Alu -14 298 212 796 173 8 0 chr15 68328205 68328332 -17367422 - FLAM_A SINE Alu -5 128 1 23 33 0 0 chr15 68328489 68328519 -17367235 + AT_rich Low_complexity Low_complexity 1 30 0 1723 161 39 4 chr15 68329013 68329293 -17366461 - AluSx SINE Alu -16 296 7 192 270 143 0 chr15 68329598 68329661 -17366093 + L2 LINE L2 3143 3214 -58 625 250 168 52 chr15 68329835 68330067 -17365687 + MIR SINE MIR 2 260 -2 467 250 179 6 chr15 68330223 68330391 -17365363 + MIR SINE MIR 54 250 -12 671 250 60 91 chr15 68330865 68331229 -17364525 - L2 LINE L2 -7 3306 2954 762 214 57 129 chr15 68331431 68331609 -17364145 + L1MC5 LINE L1 7507 7696 -265 2210 149 13 28 chr15 68331609 68332005 -17363749 + MLT1B LTR MaLR 1 390 0 762 214 57 129 chr15 68332005 68332103 -17363651 + L1MC5 LINE L1 7696 7799 -162 2287 108 0 0 chr15 68332103 68332399 -17363355 + AluSx SINE Alu 1 296 -16 762 214 57 129 chr15 68332399 68332579 -17363175 + L1MC5 LINE L1 7799 7931 -30 182 304 0 43 chr15 68332652 68332721 -17363033 + MER5B DNA MER1_type 90 155 -23 954 227 133 35 chr15 68332925 68333242 -17362512 + MLT1I LTR MaLR 60 407 -2 1564 92 0 0 chr15 68334418 68334613 -17361141 - AluSg/x SINE Alu -21 289 95 2414 98 0 0 chr15 68335273 68335580 -17360174 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr15 68335830 68335852 -17359902 + AT_rich Low_complexity Low_complexity 1 22 0 1116 173 35 0 chr15 68337030 68337232 -17358522 - MER20 DNA MER1_type -4 215 7 230 348 0 0 chr15 68337331 68337400 -17358354 + L3 LINE CR1 227 295 -1282 2295 105 3 3 chr15 68337526 68337831 -17357923 + AluSq SINE Alu 1 305 -8 277 219 12 49 chr15 68338262 68338344 -17357410 - MER103 DNA DNA -22 144 66 1583 143 49 4 chr15 68338353 68338597 -17357157 + AluJo SINE Alu 42 296 -16 381 308 144 5 chr15 68338798 68338993 -17356761 - MIR SINE MIR -10 252 31 1036 240 58 0 chr15 68338993 68339201 -17356553 - MER58A DNA MER1_type 0 224 5 2253 103 0 10 chr15 68339707 68339840 -17355914 + AluSg SINE Alu 1 134 -176 2320 92 0 10 chr15 68339840 68340134 -17355620 + AluSg SINE Alu 1 291 -19 2253 103 0 10 chr15 68340134 68340290 -17355464 + AluSg SINE Alu 134 287 -23 2126 122 10 0 chr15 68341406 68341700 -17354054 + AluSx SINE Alu 5 301 -11 1208 182 66 35 chr15 68341874 68342193 -17353561 + L1MB8 LINE L1 5850 6178 0 436 328 223 0 chr15 68342418 68342665 -17353089 + L1MC/D LINE L1 5495 5796 -2012 252 0 0 0 chr15 68342765 68342793 -17352961 + (CA)n Simple_repeat Simple_repeat 2 29 0 306 0 0 0 chr15 68342840 68342874 -17352880 + (CA)n Simple_repeat Simple_repeat 1 34 0 183 42 0 0 chr15 68342924 68342948 -17352806 + (CA)n Simple_repeat Simple_repeat 1 24 0 1475 142 146 15 chr15 68343785 68344045 -17351709 - AluJb SINE Alu -8 294 1 26 30 0 0 chr15 68346995 68347028 -17348726 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 68347329 68347357 -17348397 + AT_rich Low_complexity Low_complexity 1 28 0 301 215 74 59 chr15 68348401 68348522 -17347232 - MIR SINE MIR -55 153 24 232 67 0 0 chr15 68349381 68349411 -17346343 + Charlie8 DNA MER1_type 2388 2417 0 210 329 29 0 chr15 68350452 68350522 -17345232 + L2 LINE L2 3200 3271 -1 250 211 191 59 chr15 68351451 68351603 -17344151 - MIR3 SINE MIR -19 189 18 231 204 0 0 chr15 68351978 68352027 -17343727 + (CACG)n Simple_repeat Simple_repeat 1 49 0 192 292 250 0 chr15 68353680 68353776 -17341978 + MIR SINE MIR 125 244 -18 330 169 0 0 chr15 68353980 68354069 -17341685 + (TGAG)n Simple_repeat Simple_repeat 2 90 0 222 301 221 22 chr15 68354912 68355184 -17340570 + L2 LINE L2 2943 3268 -4 414 288 116 0 chr15 68356206 68356352 -17339402 + MIR SINE MIR 24 186 -76 187 219 14 68 chr15 68356386 68356459 -17339295 - MIR SINE MIR -20 242 174 1729 168 98 0 chr15 68356474 68356820 -17338934 + Tigger2a DNA MER2_type 1 380 -54 204 206 0 0 chr15 68357868 68357902 -17337852 + polypurine Low_complexity Low_complexity 2 35 0 327 325 26 52 chr15 68358190 68358344 -17337410 + MIR SINE MIR 42 191 -71 458 307 90 11 chr15 68358377 68358566 -17337188 - MIR SINE MIR -27 235 32 274 211 44 22 chr15 68360642 68360732 -17335022 + GA-rich Low_complexity Low_complexity 4 95 0 336 261 74 56 chr15 68361283 68361498 -17334256 + MER20 DNA MER1_type 1 219 0 241 340 119 49 chr15 68361605 68361790 -17333964 + L2 LINE L2 3107 3304 -9 465 97 0 0 chr15 68362329 68362401 -17333353 + (CTG)n Simple_repeat Simple_repeat 3 74 0 250 269 118 17 chr15 68362532 68362651 -17333103 + MIR3 SINE MIR 27 157 -51 288 289 24 0 chr15 68362730 68362813 -17332941 - MIR SINE MIR -4 258 174 406 322 109 22 chr15 68362894 68363124 -17332630 + MIR SINE MIR 13 262 0 22 70 0 0 chr15 68363262 68363305 -17332449 + GC_rich Low_complexity Low_complexity 1 43 0 480 113 0 0 chr15 68363832 68363903 -17331851 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 1147 221 166 0 chr15 68364994 68365343 -17330411 + Charlie4a DNA MER1_type 32 438 -70 241 70 163 0 chr15 68365343 68365386 -17330368 + L1PB2 LINE L1 6100 6149 -2 1985 141 0 46 chr15 68365437 68365764 -17329990 + AluSx SINE Alu 1 312 0 2110 123 7 0 chr15 68366263 68366564 -17329190 - AluSx SINE Alu -9 303 1 829 257 27 0 chr15 68366721 68366908 -17328846 - MIR SINE MIR -22 240 49 379 250 34 0 chr15 68367227 68367315 -17328439 - MIR SINE MIR -48 214 124 1225 184 113 46 chr15 68367354 68367636 -17328118 + AluJo SINE Alu 7 307 -5 287 167 0 30 chr15 68368002 68368068 -17327686 - L1MC5 LINE L1 -292 7669 7606 250 234 0 16 chr15 68368080 68368144 -17327610 + MLT1K LTR MaLR 523 585 -3 341 158 53 18 chr15 68368415 68368529 -17327225 + (TA)n Simple_repeat Simple_repeat 2 119 0 1312 155 144 19 chr15 68368914 68369178 -17326576 + AluSg1 SINE Alu 1 297 -12 782 136 32 0 chr15 68369195 68369320 -17326434 + AluJb SINE Alu 3 131 -181 539 254 92 32 chr15 68370828 68371013 -17324741 + L2 LINE L2 3072 3267 -5 2481 89 0 9 chr15 68371125 68371440 -17324314 - AluSx SINE Alu 0 312 1 260 156 0 78 chr15 68371440 68371495 -17324259 - FAM SINE Alu -147 164 119 998 176 5 37 chr15 68371499 68371687 -17324067 - AluJo SINE Alu -130 182 1 236 264 14 14 chr15 68371986 68372058 -17323696 - LTR67 LTR ERVL -392 165 94 203 321 71 0 chr15 68372225 68372309 -17323445 + L2 LINE L2 3168 3257 -15 2257 106 7 3 chr15 68372380 68372672 -17323082 - AluSg SINE Alu -16 294 2 917 119 0 37 chr15 68372721 68372855 -17322899 - FLAM_C SINE Alu -4 129 1 32 0 0 0 chr15 68373922 68373954 -17321800 + AT_rich Low_complexity Low_complexity 1 32 0 1868 160 0 32 chr15 68373993 68374305 -17321449 + AluJo SINE Alu 7 308 -4 2212 133 0 0 chr15 68374418 68374719 -17321035 - AluSx SINE Alu -11 301 1 2784 197 16 2 chr15 68374847 68375461 -17320293 + MER82 DNA MER2_type 1 653 0 2305 105 0 10 chr15 68375571 68375876 -17319878 + AluSc SINE Alu 1 302 -7 214 256 106 50 chr15 68376138 68376265 -17319489 - MIR SINE MIR -113 149 14 488 289 53 13 chr15 68376419 68376571 -17319183 + MIR SINE MIR 49 206 -56 213 349 0 0 chr15 68376858 68376924 -17318830 - MIR3 SINE MIR -19 189 124 576 267 127 12 chr15 68377951 68378168 -17317586 + MIR SINE MIR 21 262 0 201 176 0 0 chr15 68378168 68378202 -17317552 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2125 115 0 34 chr15 68378257 68378603 -17317151 + AluSx SINE Alu 1 335 0 321 230 0 0 chr15 68378711 68378785 -17316969 - L1ME4a LINE L1 -61 6060 5987 1587 133 0 50 chr15 68379770 68380071 -17315683 + MLT1B LTR MaLR 3 288 -102 2006 102 14 14 chr15 68380089 68380383 -17315371 - AluSx SINE Alu -18 294 1 1797 147 37 4 chr15 68380573 68380873 -17314881 - AluSx SINE Alu 0 309 1 1492 151 36 29 chr15 68380887 68381166 -17314588 - AluJo SINE Alu -11 301 21 257 200 0 86 chr15 68381286 68381356 -17314398 - MER91 DNA MER1_type -76 64 1 279 303 17 59 chr15 68381788 68381907 -17313847 - L3 LINE CR1 -88 1489 1376 510 274 33 79 chr15 68381927 68382067 -17313687 - MIR SINE MIR -3 259 131 2405 81 0 25 chr15 68382067 68382387 -17313367 + AluSx SINE Alu 1 312 0 510 274 33 79 chr15 68382387 68382461 -17313293 - MIR SINE MIR -131 131 55 233 91 0 68 chr15 68382839 68382883 -17312871 - MLT2D LTR ERVL -7 407 367 357 109 0 0 chr15 68382884 68382939 -17312815 + (TG)n Simple_repeat Simple_repeat 2 56 0 267 54 0 0 chr15 68382957 68382994 -17312760 + (GA)n Simple_repeat Simple_repeat 2 38 0 1380 190 23 8 chr15 68382995 68383324 -17312430 - MLT2D LTR ERVL -48 349 1 289 344 79 35 chr15 68383381 68383583 -17312171 - L3 LINE CR1 -255 1322 1107 1848 127 65 0 chr15 68383583 68383858 -17311896 - AluSx SINE Alu -19 293 1 289 344 79 35 chr15 68383858 68383882 -17311872 - L3 LINE CR1 -470 1107 1086 852 255 93 19 chr15 68383882 68384255 -17311499 - LTR16A1 LTR ERVL -2 455 75 2348 72 6 28 chr15 68384395 68384714 -17311040 - AluSx SINE Alu 0 312 1 235 318 66 0 chr15 68384824 68384975 -17310779 - LTR67 LTR ERVL -2 555 395 2292 98 0 0 chr15 68385112 68385409 -17310345 + AluSx SINE Alu 3 299 -13 213 299 31 52 chr15 68385650 68385747 -17310007 - L3 LINE CR1 -582 995 901 240 358 42 0 chr15 68385950 68386045 -17309709 - L2 LINE L2 -49 3223 3125 230 53 105 0 chr15 68386052 68386090 -17309664 + AluSg/x SINE Alu 138 179 -124 214 362 39 39 chr15 68386102 68386229 -17309525 - L2 LINE L2 -490 2824 2698 852 121 0 0 chr15 68386229 68386353 -17309401 + AluSg/x SINE Alu 189 312 0 343 131 0 0 chr15 68386444 68386505 -17309249 - AluSc SINE Alu -4 295 235 609 320 126 4 chr15 68386524 68386755 -17308999 + MIR SINE MIR 2 260 -2 384 330 113 32 chr15 68387585 68387958 -17307796 - L2 LINE L2 -337 2977 2575 361 302 88 22 chr15 68387944 68388126 -17307628 + MIR SINE MIR 34 227 -35 * 21 36 0 0 chr15 68389112 68389140 -17306614 + GC_rich Low_complexity Low_complexity 1 28 0 210 71 0 0 chr15 68390819 68390847 -17304907 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr15 68398129 68398164 -17297590 + GC_rich Low_complexity Low_complexity 1 35 0 329 264 96 62 chr15 68399424 68399602 -17296152 - MIR3 SINE MIR -10 198 15 238 419 44 0 chr15 68400997 68401133 -17294621 - MIR3 SINE MIR -14 194 53 25 0 0 0 chr15 68401503 68401528 -17294226 + GC_rich Low_complexity Low_complexity 1 25 0 226 281 70 0 chr15 68402389 68402446 -17293308 + MIR SINE MIR 85 145 -63 220 286 11 22 chr15 68403629 68403720 -17292034 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 200 146 0 21 chr15 68404584 68404632 -17291122 + (GA)n Simple_repeat Simple_repeat 1 47 0 754 214 94 9 chr15 68405100 68405324 -17290430 - L1ME2 LINE L1 -8 6156 5914 411 21 0 0 chr15 68406233 68406281 -17289473 + (TA)n Simple_repeat Simple_repeat 2 49 0 353 212 150 18 chr15 68406995 68407108 -17288646 + MIR SINE MIR 135 262 0 246 297 119 38 chr15 68407353 68407538 -17288216 + L3 LINE CR1 1230 1429 -148 23 0 0 0 chr15 68408812 68408835 -17286919 + GC_rich Low_complexity Low_complexity 1 23 0 198 333 14 0 chr15 68409928 68409997 -17285757 - MIR SINE MIR -177 85 16 567 237 46 13 chr15 68410316 68410468 -17285286 - MIR3 SINE MIR -38 170 14 290 232 14 0 chr15 68412975 68413044 -17282710 + Charlie5 DNA MER1_type 1 70 -2542 * 403 192 169 0 chr15 68413043 68413173 -17282581 + Charlie5 DNA MER1_type 2431 2582 -30 204 250 47 0 chr15 68414129 68414193 -17281561 - MIR SINE MIR -12 250 184 240 189 75 0 chr15 68415113 68415166 -17280588 + MIR SINE MIR 111 167 -95 335 268 62 0 chr15 68415906 68416003 -17279751 - L2 LINE L2 0 3313 3211 1716 120 28 92 chr15 68416317 68416642 -17279112 - AluJo SINE Alu -6 306 3 982 122 7 0 chr15 68418080 68418219 -17277535 + FRAM SINE Alu 16 155 -21 406 151 14 0 chr15 68418277 68418350 -17277404 - MER116 DNA Mariner -2 78 5 258 32 0 0 chr15 68419096 68419127 -17276627 + (TG)n Simple_repeat Simple_repeat 2 32 0 351 336 7 36 chr15 68420602 68420739 -17275015 + MIR3 SINE MIR 66 198 -10 221 232 0 72 chr15 68421549 68421618 -17274136 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 283 306 76 25 chr15 68422510 68422667 -17273087 + MIR SINE MIR 21 185 -77 349 272 143 14 chr15 68423593 68423685 -17272069 + MIR3 SINE MIR 33 112 -96 1207 200 97 21 chr15 68423685 68423975 -17271779 + AluJo SINE Alu 1 312 0 349 272 143 14 chr15 68423975 68424029 -17271725 + MIR3 SINE MIR 112 198 -10 462 287 40 13 chr15 68424560 68424710 -17271044 + MIR SINE MIR 63 216 -46 184 370 65 13 chr15 68424965 68425119 -17270635 - MIR SINE MIR -54 208 47 490 295 148 30 chr15 68426227 68426593 -17269161 + L1MC4a LINE L1 5517 5925 -1883 681 291 16 11 chr15 68427711 68427900 -17267854 - MIR SINE MIR -57 205 16 371 267 108 8 chr15 68428776 68428896 -17266858 - MIR SINE MIR -70 192 61 371 212 61 76 chr15 68429046 68429178 -17266576 - MIR SINE MIR -16 246 117 246 32 0 0 chr15 68430109 68430140 -17265614 + (CCCCG)n Simple_repeat Simple_repeat 1 31 0 359 193 174 28 chr15 68432228 68432337 -17263417 - MIR SINE MIR -56 206 82 248 311 176 0 chr15 68432557 68432676 -17263078 + MIR SINE MIR 53 192 -70 566 155 10 0 chr15 68433234 68433331 -17262423 - L2 LINE L2 -18 3295 3198 450 0 0 0 chr15 68433331 68433381 -17262373 + (TG)n Simple_repeat Simple_repeat 2 51 0 599 154 21 49 chr15 68433848 68433991 -17261763 - MIR SINE MIR -123 139 1 232 273 157 16 chr15 68434123 68434244 -17261510 - MIR3 SINE MIR -32 176 39 202 273 71 40 chr15 68434763 68434862 -17260892 + MIR SINE MIR 28 129 -133 360 0 0 0 chr15 68438016 68438056 -17257698 + (CA)n Simple_repeat Simple_repeat 2 41 0 396 219 57 8 chr15 68441984 68442107 -17253647 - MIR3 SINE MIR -17 191 63 193 294 0 0 chr15 68442144 68442195 -17253559 + MIR3 SINE MIR 110 160 -48 582 41 0 0 chr15 68442790 68442863 -17252891 + (GA)n Simple_repeat Simple_repeat 2 74 0 261 0 0 0 chr15 68443818 68443847 -17251907 + (CA)n Simple_repeat Simple_repeat 1 29 0 191 381 9 9 chr15 68444484 68444589 -17251165 + L3 LINE CR1 1408 1512 -65 * 347 282 90 58 chr15 68444578 68444766 -17250988 - L2 LINE L2 -4 3268 3075 2077 138 0 3 chr15 68444870 68445186 -17250568 - AluSx SINE Alu 0 312 1 203 296 19 0 chr15 68445209 68445263 -17250491 + L3 LINE CR1 1512 1566 -11 474 18 0 0 chr15 68445899 68445954 -17249800 + (TA)n Simple_repeat Simple_repeat 1 55 0 701 258 104 5 chr15 68445976 68446197 -17249557 + MIR SINE MIR 1 243 -19 219 146 0 0 chr15 68447148 68447189 -17248565 + (TATG)n Simple_repeat Simple_repeat 1 41 0 182 301 24 24 chr15 68447560 68447643 -17248111 + MIR SINE MIR 30 112 -150 294 293 62 77 chr15 68448215 68448423 -17247331 - MIR SINE MIR -20 242 38 523 300 77 35 chr15 68449700 68449960 -17245794 + L2 LINE L2 2581 2851 -463 * 2026 253 72 27 chr15 68449956 68450692 -17245062 - L2 LINE L2 -730 2584 1816 362 273 10 10 chr15 68451894 68451993 -17243761 + MIR3 SINE MIR 81 179 -29 639 266 33 21 chr15 68452502 68452689 -17243065 + MLT1J LTR MaLR 35 266 -245 206 308 31 0 chr15 68452993 68453058 -17242696 - MIR SINE MIR 0 262 196 823 202 81 17 chr15 68453065 68453238 -17242516 - AluJ SINE Alu -6 306 123 289 105 84 0 chr15 68453238 68453333 -17242421 + (TA)n Simple_repeat Simple_repeat 1 103 0 826 134 0 0 chr15 68453333 68453452 -17242302 - AluJ SINE Alu -183 119 1 298 246 26 9 chr15 68453597 68453708 -17242046 - MIR SINE MIR -58 150 45 655 182 137 56 chr15 68453754 68453951 -17241803 + MIR SINE MIR 16 218 -44 2097 152 0 0 chr15 68455019 68455321 -17240433 - AluSx SINE Alu -2 310 9 1082 194 4 56 chr15 68455593 68455825 -17239929 - AluJo SINE Alu -92 220 1 281 298 12 36 chr15 68455987 68456071 -17239683 + L2 LINE L2 3191 3272 0 2190 119 0 3 chr15 68456127 68456440 -17239314 - AluSx SINE Alu 0 312 1 912 254 68 42 chr15 68456661 68457016 -17238738 + MLT1I LTR MaLR 46 409 0 258 249 137 19 chr15 68457522 68457635 -17238119 - MLT1L LTR MaLR -135 480 328 1943 267 119 14 chr15 68457750 68458455 -17237299 - MER20B DNA MER1_type 0 783 5 270 136 0 0 chr15 68458690 68458734 -17237020 + (TG)n Simple_repeat Simple_repeat 2 45 0 485 286 35 29 chr15 68458945 68459116 -17236638 - L1M4 LINE L1 -832 5314 5143 328 242 34 24 chr15 68459482 68459606 -17236148 + MIR3 SINE MIR 32 157 -51 255 276 76 9 chr15 68460719 68460824 -17234930 + L2 LINE L2 3144 3255 -17 225 0 0 0 chr15 68461138 68461163 -17234591 + (TG)n Simple_repeat Simple_repeat 1 25 0 1262 223 79 31 chr15 68461181 68461660 -17234094 - MER97c DNA MER1_type? -4 1086 585 542 200 0 9 chr15 68461764 68461874 -17233880 - MER97a DNA MER1_type? -537 357 249 1037 99 33 13 chr15 68461874 68462025 -17233729 + AluSp/q SINE Alu 159 312 -1 1499 134 36 78 chr15 68462036 68462343 -17233411 + L1MB4 LINE L1 5887 6180 0 385 228 214 7 chr15 68462392 68462537 -17233217 - MER97b DNA MER1_type? -878 175 1 423 0 0 0 chr15 68464160 68464207 -17231547 + (TG)n Simple_repeat Simple_repeat 2 48 0 1036 173 128 0 chr15 68464534 68464760 -17230994 + L1MD3 LINE L1 7729 7983 -12 182 261 43 0 chr15 68465028 68465097 -17230657 - MIR SINE MIR -128 134 63 5402 208 57 47 chr15 68465712 68465939 -17229815 - L1M4c LINE L1 -5195 1347 1124 2457 53 0 0 chr15 68465939 68466249 -17229505 + AluY SINE Alu 1 310 0 5402 208 57 47 chr15 68466249 68466384 -17229370 - L1M4c LINE L1 -5418 1124 992 1839 151 0 51 chr15 68466384 68466696 -17229058 - AluJb SINE Alu -15 297 2 5402 208 57 47 chr15 68466696 68467703 -17228051 - L1M4c LINE L1 -5550 992 2 2186 138 0 0 chr15 68467939 68468251 -17227503 - AluSx SINE Alu 0 312 1 557 189 140 0 chr15 68468719 68468862 -17226892 - L1ME1 LINE L1 -252 5914 5752 1726 243 32 7 chr15 68468863 68469295 -17226459 - L1MDa LINE L1 -6073 467 25 304 264 56 48 chr15 68469303 68469428 -17226326 - L1ME1 LINE L1 -423 5698 5573 22 0 0 0 chr15 68469498 68469520 -17226234 + AT_rich Low_complexity Low_complexity 1 22 0 1033 162 7 0 chr15 68469600 68469754 -17226000 - AluSg/x SINE Alu -23 289 135 2452 86 3 0 chr15 68469756 68470058 -17225696 - AluSx SINE Alu -9 303 1 333 238 0 25 chr15 68470658 68470738 -17225016 + L2 LINE L2 3189 3266 -6 1740 176 14 3 chr15 68470748 68471044 -17224710 + AluJo SINE Alu 4 302 -10 235 276 109 19 chr15 68471093 68471249 -17224505 - L1ME4a LINE L1 -18 6103 5934 1652 119 0 0 chr15 68471282 68471508 -17224246 - AluSg/x SINE Alu -2 308 83 2169 140 3 0 chr15 68472266 68472574 -17223180 - AluJb SINE Alu -3 309 1 2392 71 7 3 chr15 68472769 68473087 -17222667 - AluY SINE Alu 0 311 1 2228 113 0 3 chr15 68473087 68473387 -17222367 - AluSq SINE Alu -14 299 1 200 278 170 69 chr15 68473927 68474049 -17221705 + L2 LINE L2 2404 2512 -802 2404 96 7 0 chr15 68474049 68474352 -17221402 - AluSq SINE Alu -8 305 1 200 278 170 69 chr15 68474352 68474564 -17221190 + L2 LINE L2 2512 2772 -542 330 238 0 25 chr15 68475215 68475295 -17220459 + L2 LINE L2 3189 3266 -6 190 200 0 0 chr15 68479054 68479094 -17216660 - L3b LINE CR1 -237 1346 1307 261 249 0 85 chr15 68481314 68481503 -17214251 + G-rich Low_complexity Low_complexity 2 174 0 711 156 102 0 chr15 68481635 68481787 -17213967 + AluJb SINE Alu 146 310 0 2412 221 8 42 chr15 68481788 68481972 -17213782 + L1ME1 LINE L1 5482 5671 -495 1880 156 0 0 chr15 68481972 68482242 -17213512 + AluJb SINE Alu 22 291 -21 225 0 0 0 chr15 68482244 68482269 -17213485 + (CCA)n Simple_repeat Simple_repeat 1 25 0 2412 221 8 42 chr15 68482269 68482629 -17213125 + L1ME1 LINE L1 5672 6010 -156 2216 142 0 0 chr15 68482629 68482932 -17212822 + AluSx SINE Alu 1 303 -9 2412 221 8 42 chr15 68482932 68482975 -17212779 + L1ME1 LINE L1 6010 6053 -113 3983 207 61 34 chr15 68482978 68483247 -17212507 + L1ME LINE L1 4179 4439 -1727 810 221 0 7 chr15 68483247 68483401 -17212353 + FRAM SINE Alu 1 153 -13 3983 207 61 34 chr15 68483401 68484211 -17211543 + L1ME LINE L1 4439 5226 -940 2273 75 55 3 chr15 68484211 68484504 -17211250 + AluY SINE Alu 1 308 -3 3983 207 61 34 chr15 68484504 68484794 -17210960 + L1ME LINE L1 5226 5601 -565 2398 135 52 32 chr15 68484794 68485237 -17210517 + LTR47A LTR ERVL 1 452 0 3983 207 61 34 chr15 68485237 68485411 -17210343 + L1ME LINE L1 5601 5769 -397 1599 213 58 16 chr15 68485408 68485836 -17209918 + L1ME1 LINE L1 5520 5965 -201 * 2172 117 10 3 chr15 68485838 68486137 -17209617 + AluSq SINE Alu 1 301 -12 232 302 23 47 chr15 68486219 68486305 -17209449 + L2 LINE L2 3178 3261 -11 2020 276 52 37 chr15 68486317 68486968 -17208786 + MER115 DNA AcHobo 33 693 0 2195 74 7 7 chr15 68487001 68487308 -17208446 - AluSx SINE Alu 0 307 1 2393 59 28 3 chr15 68488607 68488897 -17206857 - AluSx SINE Alu -15 297 1 662 228 128 28 chr15 68489365 68489576 -17206178 - MIR SINE MIR -29 233 2 2401 100 3 0 chr15 68489732 68490042 -17205712 + AluY SINE Alu 1 311 0 2247 120 0 0 chr15 68490055 68490356 -17205398 + AluSg SINE Alu 1 301 -9 2028 138 0 6 chr15 68491523 68491834 -17203920 + AluSc SINE Alu 1 309 0 267 216 333 18 chr15 68493329 68493440 -17202314 - MIR3 SINE MIR -14 194 49 2320 102 0 43 chr15 68493516 68493839 -17201915 - AluSx SINE Alu -3 309 1 992 158 0 0 chr15 68494547 68494711 -17201043 + FRAM SINE Alu 1 164 -2 245 271 136 0 chr15 68495568 68495686 -17200068 - MER117 DNA MER1_type -63 134 1 870 181 143 0 chr15 68495756 68495938 -17199816 - MER20 DNA MER1_type -10 209 2 1444 156 159 0 chr15 68496722 68497005 -17198749 - MER7A DNA MER2_type -19 327 2 217 246 0 46 chr15 68500598 68500663 -17195091 - MIR3 SINE MIR -139 69 8 1904 123 32 21 chr15 68500790 68501074 -17194680 + AluJo SINE Alu 5 291 -21 183 413 33 0 chr15 68501871 68501992 -17193762 - L3 LINE CR1 0 1577 1453 221 236 214 11 chr15 68502274 68502363 -17193391 - L2 LINE L2 0 3272 3166 1674 186 0 7 chr15 68504120 68504405 -17191349 + AluJb SINE Alu 6 288 -24 192 200 0 0 chr15 68504406 68504456 -17191298 + GA-rich Low_complexity Low_complexity 2 51 0 698 178 23 8 chr15 68504498 68504627 -17191127 - FLAM_A SINE Alu -2 131 1 1158 86 0 0 chr15 68504738 68504877 -17190877 + AluSq/x SINE Alu 1 139 -173 2258 106 0 26 chr15 68504878 68505190 -17190564 + AluSx SINE Alu 7 310 -2 2443 87 7 0 chr15 68506391 68506700 -17189054 + AluY SINE Alu 1 311 0 339 324 23 17 chr15 68506886 68507059 -17188695 - L1MC5 LINE L1 -30 7931 7758 615 302 40 20 chr15 68507074 68507276 -17188478 + MIR SINE MIR 47 252 -10 1183 229 30 30 chr15 68507311 68507613 -17188141 - AluJo SINE Alu 0 302 1 1431 149 0 61 chr15 68507798 68508060 -17187694 - AluJo SINE Alu -6 306 61 626 276 159 18 chr15 68508060 68508393 -17187361 + L3 LINE CR1 1087 1466 -111 1468 209 54 0 chr15 68508397 68508693 -17187061 + AluJo SINE Alu 1 312 0 192 135 0 0 chr15 68509781 68509818 -17185936 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 299 274 53 0 chr15 68511011 68511106 -17184648 - MIR SINE MIR -79 183 84 321 259 167 19 chr15 68512005 68512167 -17183587 - MIR SINE MIR -7 255 70 2050 245 40 2 chr15 68514451 68515006 -17180748 + L1ME3 LINE L1 5585 6160 -2 219 304 0 0 chr15 68515245 68515324 -17180430 + GA-rich Low_complexity Low_complexity 3 81 0 418 219 117 18 chr15 68515496 68515647 -17180107 - MIR SINE MIR -41 167 55 21 57 0 0 chr15 68517095 68517130 -17178624 + GC_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 68517168 68517195 -17178559 + GC_rich Low_complexity Low_complexity 1 27 0 508 296 65 80 chr15 68517386 68517801 -17177953 + MARNA DNA Mariner 37 445 -141 241 197 91 0 chr15 68517860 68517926 -17177828 - MARNA DNA Mariner -471 115 44 256 285 42 91 chr15 68518327 68518355 -17177399 - L1MB7 LINE L1 -270 5914 5887 627 296 30 51 chr15 68518355 68518593 -17177161 - L1MC4a LINE L1 -1921 5887 5656 255 61 0 0 chr15 68518593 68518626 -17177128 + (TA)n Simple_repeat Simple_repeat 2 34 0 627 296 30 51 chr15 68518626 68518718 -17177036 - L1MC4a LINE L1 -2152 5656 5564 2061 124 10 7 chr15 68520434 68520724 -17175030 - AluSx SINE Alu -21 291 1 22 0 0 0 chr15 68520885 68520907 -17174847 + AT_rich Low_complexity Low_complexity 1 22 0 2224 70 7 47 chr15 68520915 68521214 -17174540 + AluSq SINE Alu 11 297 -16 267 202 73 28 chr15 68521569 68521678 -17174076 - L1ME3A LINE L1 -206 5964 5851 227 346 12 25 chr15 68521990 68522071 -17173683 - L2 LINE L2 -257 3015 2936 24 67 0 0 chr15 68522956 68523001 -17172753 + GC_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr15 68523047 68523082 -17172672 + GC_rich Low_complexity Low_complexity 1 35 0 251 270 101 0 chr15 68523597 68523686 -17172068 + L1ME LINE L1 5572 5669 -452 1688 121 0 4 chr15 68523808 68524064 -17171690 + AluSq SINE Alu 55 309 0 231 288 14 41 chr15 68524110 68524183 -17171571 + L2 LINE L2 3117 3187 -85 1321 154 152 92 chr15 68524240 68524287 -17171467 + MLT1C LTR MaLR 1 44 -423 2465 72 0 20 chr15 68524287 68524592 -17171162 + AluY SINE Alu 1 299 -12 1321 154 152 92 chr15 68524592 68524979 -17170775 + MLT1C LTR MaLR 44 461 -6 665 76 0 0 chr15 68525462 68525554 -17170200 - AluY SINE Alu -180 131 40 245 283 113 38 chr15 68526518 68526624 -17169130 - MIR3 SINE MIR -50 158 45 354 265 4 29 chr15 68527232 68527509 -17168245 + CT-rich Low_complexity Low_complexity 1 269 0 326 182 125 23 chr15 68527611 68527699 -17168055 - MIR3 SINE MIR -31 177 81 613 319 85 5 chr15 68527747 68527981 -17167773 - MIR SINE MIR 0 262 16 1743 136 0 68 chr15 68528093 68528388 -17167366 - AluSx SINE Alu -37 275 1 236 263 8 0 chr15 68529175 68529247 -17166507 - MIR SINE MIR -65 143 68 287 314 12 0 chr15 68529430 68529516 -17166238 - MER91B DNA MER1_type 0 190 104 2269 100 10 7 chr15 68529533 68529834 -17165920 - AluSx SINE Alu -10 302 1 196 249 0 186 chr15 68530387 68530564 -17165190 - MIR SINE MIR -13 249 106 1394 146 4 42 chr15 68530933 68531064 -17164690 + AluJo SINE Alu 1 122 -190 1980 108 4 0 chr15 68531064 68531343 -17164411 + AluSq SINE Alu 32 311 0 1394 146 4 42 chr15 68531343 68531449 -17164305 + AluJo SINE Alu 122 230 -82 668 237 125 32 chr15 68531894 68532173 -17163581 - L2 LINE L2 -1 3312 3008 264 257 95 9 chr15 68532220 68532325 -17163429 + L2 LINE L2 3194 3307 -6 219 303 168 8 chr15 68535445 68535564 -17160190 - MIR SINE MIR -11 251 114 221 289 58 19 chr15 68535858 68535962 -17159792 - MIR3 SINE MIR -14 194 87 784 265 143 61 chr15 68536489 68536998 -17158756 + L1MC4a LINE L1 5569 6119 -1689 2122 123 13 3 chr15 68537023 68537325 -17158429 + AluSq SINE Alu 1 305 -8 230 297 14 0 chr15 68537735 68537809 -17157945 + (CA)n Simple_repeat Simple_repeat 2 76 0 338 258 57 40 chr15 68538107 68538231 -17157523 - MIR SINE MIR -80 128 3 1934 158 10 23 chr15 68539880 68540190 -17155564 + AluJo SINE Alu 3 308 -4 406 252 107 8 chr15 68540216 68540347 -17155407 - MIR3 SINE MIR -55 153 10 492 157 15 8 chr15 68540933 68541067 -17154687 + GA-rich Low_complexity Low_complexity 2 136 0 373 287 0 16 chr15 68541082 68541204 -17154550 + GA-rich Low_complexity Low_complexity 2 121 0 213 225 0 0 chr15 68541219 68541308 -17154446 + GA-rich Low_complexity Low_complexity 2 90 0 297 0 0 0 chr15 68541989 68542022 -17153732 + (CA)n Simple_repeat Simple_repeat 2 34 0 2199 113 0 23 chr15 68542503 68542805 -17152949 - AluSx SINE Alu -17 295 1 243 356 0 0 chr15 68542832 68542933 -17152821 + MLT1L LTR MaLR 110 210 -405 762 248 227 32 chr15 68542947 68543411 -17152343 - MLT1G1 LTR MaLR -5 590 1 285 257 40 14 chr15 68543411 68543483 -17152271 + MLT1L LTR MaLR 222 295 -320 349 200 0 0 chr15 68543722 68543792 -17151962 + L1ME LINE L1 4527 4596 -1550 247 169 68 0 chr15 68543940 68543999 -17151755 + L1ME LINE L1 5720 5782 -339 1673 153 34 30 chr15 68544006 68544301 -17151453 + AluJo SINE Alu 6 301 -11 630 223 60 33 chr15 68544312 68544496 -17151258 - MER5A DNA MER1_type 0 189 1 320 247 0 27 chr15 68544603 68544676 -17151078 - L1MC4 LINE L1 -1339 6703 6633 181 229 57 57 chr15 68544980 68545050 -17150704 + MIR SINE MIR 168 237 -25 656 302 29 53 chr15 68545185 68545563 -17150191 - MLT1K LTR MaLR -57 531 163 1847 223 102 33 chr15 68545620 68546131 -17149623 - MLT1E LTR MaLR -18 575 30 471 313 25 0 chr15 68546190 68546350 -17149404 - MIR SINE MIR -65 197 34 2356 98 3 0 chr15 68546388 68546683 -17149071 + AluSx SINE Alu 1 296 -16 654 269 98 13 chr15 68547259 68547685 -17148069 - MLT1J LTR MaLR 0 511 3 1028 144 0 7 chr15 68548497 68548642 -17147112 + AluSg/x SINE Alu 151 296 -16 354 23 0 0 chr15 68548642 68548685 -17147069 + (CA)n Simple_repeat Simple_repeat 2 44 0 241 322 25 8 chr15 68548792 68548913 -17146841 - L2 LINE L2 -343 2970 2848 327 270 9 36 chr15 68549056 68549167 -17146587 + L2 LINE L2 2937 3044 -228 900 192 40 20 chr15 68549252 68549450 -17146304 + MIR SINE MIR 61 262 0 240 303 190 0 chr15 68549890 68550085 -17145669 + L3 LINE CR1 1087 1318 -259 493 314 45 18 chr15 68550389 68550612 -17145142 + MIR SINE MIR 20 248 -14 414 0 0 0 chr15 68551370 68551416 -17144338 + (CA)n Simple_repeat Simple_repeat 2 47 0 501 296 22 48 chr15 68552275 68552505 -17143249 + MIR SINE MIR 19 242 -20 830 131 307 0 chr15 68552768 68552944 -17142810 + MER51A LTR ERV1 1 230 -404 * 1301 133 133 19 chr15 68552942 68553198 -17142556 + MER51A LTR ERV1 350 634 0 2073 212 86 109 chr15 68553198 68554047 -17141707 + MER51A-int LTR ERV1 1 829 -6987 451 313 24 31 chr15 68554182 68554440 -17141314 + MER51A-int LTR ERV1 1435 1626 -5050 450 330 47 41 chr15 68554641 68555342 -17140412 + MER51A-int LTR ERV1 1231 1964 -4690 3548 336 54 37 chr15 68555637 68559073 -17136681 + MER51A-int LTR ERV1 2662 6156 -1600 2069 148 3 9 chr15 68559278 68559615 -17136139 + MER51A-int LTR ERV1 7482 7816 0 1637 99 56 43 chr15 68559615 68560025 -17135729 + MER51A LTR ERV1 1 634 0 275 254 87 124 chr15 68560552 68560624 -17135130 + MER5B DNA MER1_type 1 74 -104 2212 107 0 0 chr15 68560624 68560904 -17134850 + AluSg SINE Alu 8 287 -23 275 254 87 124 chr15 68560904 68561016 -17134738 + MER5B DNA MER1_type 74 178 0 1763 191 7 10 chr15 68561559 68561863 -17133891 + AluJo SINE Alu 6 308 -4 576 171 38 0 chr15 68562966 68563071 -17132683 - Tigger3(Golem) DNA MER2_type -1 3028 2920 351 180 16 0 chr15 68563202 68563263 -17132491 - Tigger3(Golem) DNA MER2_type -2949 80 19 495 0 0 0 chr15 68563829 68563884 -17131870 + (TG)n Simple_repeat Simple_repeat 1 55 0 304 273 263 19 chr15 68564062 68564271 -17131483 + L2 LINE L2 2919 3178 -94 502 293 80 11 chr15 68565432 68565620 -17130134 + MIR SINE MIR 56 256 -6 312 216 27 81 chr15 68565688 68565799 -17129955 - MIR SINE MIR -62 146 42 207 269 90 13 chr15 68566363 68566441 -17129313 - L2 LINE L2 -28 3285 3202 920 208 174 20 chr15 68566857 68567155 -17128599 - MER2 DNA MER2_type 0 344 1 960 111 0 0 chr15 68568055 68568235 -17127519 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 549 158 0 0 chr15 68568237 68568376 -17127378 + CT-rich Low_complexity Low_complexity 4 142 0 801 134 0 0 chr15 68568381 68568553 -17127201 + (TTCC)n Simple_repeat Simple_repeat 3 174 0 2097 121 22 32 chr15 68568563 68568878 -17126876 - AluSx SINE Alu 0 312 1 333 203 244 0 chr15 68568893 68569016 -17126738 + MER5A DNA MER1_type 35 187 -2 649 268 0 17 chr15 68569019 68569198 -17126556 + MER5B DNA MER1_type 3 178 0 416 227 84 0 chr15 68569206 68569325 -17126429 - MER5A DNA MER1_type 0 189 61 355 186 21 0 chr15 68569325 68569422 -17126332 + CT-rich Low_complexity Low_complexity 1 99 0 1653 165 7 11 chr15 68569423 68569696 -17126058 - AluJo SINE Alu -36 276 5 350 183 70 0 chr15 68569698 68569769 -17125985 - MER5A DNA MER1_type -113 76 1 653 306 30 4 chr15 68571724 68571956 -17123798 - MIR SINE MIR -19 243 6 2070 121 0 31 chr15 68572146 68572473 -17123281 + AluSx SINE Alu 6 323 0 335 240 77 10 chr15 68574292 68574396 -17121358 - MIR3 SINE MIR -40 168 58 * 429 197 10 62 chr15 68574369 68574497 -17121257 + MIR SINE MIR 30 148 -61 2332 103 0 10 chr15 68574497 68574797 -17120957 + AluSx SINE Alu 1 297 -15 351 291 62 74 chr15 68574837 68575095 -17120659 - L2 LINE L2 -337 2977 2723 2334 101 0 0 chr15 68575110 68575434 -17120320 - AluSp SINE Alu 0 313 1 1115 76 0 0 chr15 68575438 68575569 -17120185 - AluSp SINE Alu -182 131 1 297 157 57 57 chr15 68576235 68576305 -17119449 - MIR SINE MIR -99 163 94 247 284 0 34 chr15 68576624 68576712 -17119042 + MIR SINE MIR 82 166 -96 236 188 217 0 chr15 68577533 68577602 -17118152 + L2 LINE L2 3148 3231 -41 342 328 46 40 chr15 68577615 68577789 -17117965 - MIR SINE MIR -22 240 66 2322 110 0 0 chr15 68577831 68578131 -17117623 + AluSg SINE Alu 1 300 -10 444 19 0 0 chr15 68579879 68579932 -17115822 + (GA)n Simple_repeat Simple_repeat 1 53 0 396 0 0 0 chr15 68579931 68579975 -17115779 + (TG)n Simple_repeat Simple_repeat 2 45 0 * 365 305 137 32 chr15 68580953 68581143 -17114611 + MIR SINE MIR 41 250 -12 484 280 27 7 chr15 68581185 68581335 -17114419 + MIR3 SINE MIR 49 201 -7 2206 212 108 94 chr15 68581419 68582443 -17113311 + L1MC4 LINE L1 6930 7971 -71 1626 183 0 26 chr15 68582443 68582755 -17112999 - AluSx SINE Alu -8 304 1 2206 212 108 94 chr15 68582755 68582826 -17112928 + L1MC4 LINE L1 7971 8040 -2 906 277 140 21 chr15 68582930 68583359 -17112395 + L2 LINE L2 2834 3313 0 2208 110 0 0 chr15 68584816 68585124 -17110630 + AluSx SINE Alu 1 308 -4 229 309 0 24 chr15 68585154 68585238 -17110516 + MIR SINE MIR 79 160 -102 530 242 37 2 chr15 68587190 68587392 -17108362 + MIR SINE MIR 15 221 -41 488 197 63 16 chr15 68587792 68587919 -17107835 - MER94 DNA DNA -1 133 1 965 157 0 67 chr15 68588082 68588260 -17107494 - FRAM SINE Alu 0 166 1 413 327 123 19 chr15 68588498 68588758 -17106996 - L3 LINE CR1 -452 1125 839 183 306 0 0 chr15 68588830 68588879 -17106875 + MIR3 SINE MIR 157 205 -3 541 270 29 59 chr15 68589110 68589314 -17106440 - MIR SINE MIR -51 211 14 269 98 0 20 chr15 68590364 68590415 -17105339 + (CAT)n Simple_repeat Simple_repeat 3 52 0 1390 208 71 0 chr15 68590454 68590762 -17104992 + L1MD3 LINE L1 7666 7995 0 580 118 90 49 chr15 68591004 68591148 -17104606 - L1ME4a LINE L1 -4 6117 5968 1015 175 0 0 chr15 68591286 68591463 -17104291 - AluJb SINE Alu -2 310 134 1997 123 7 0 chr15 68591463 68591771 -17103983 - AluJb SINE Alu -2 310 1 283 291 14 57 chr15 68591795 68591936 -17103818 - L1ME4a LINE L1 -333 5788 5654 259 293 264 24 chr15 68592249 68592457 -17103297 - MIR SINE MIR -3 259 2 1962 91 72 0 chr15 68593156 68593432 -17102322 + AluSx SINE Alu 1 296 -16 405 266 73 11 chr15 68593673 68593840 -17101914 + MIR SINE MIR 4 186 -57 983 182 6 17 chr15 68593840 68594021 -17101733 - AluJo SINE Alu -133 179 1 222 255 0 0 chr15 68594053 68594104 -17101650 + L2 LINE L2 3210 3260 -12 346 271 50 36 chr15 68594214 68594354 -17101400 + MIR3 SINE MIR 42 183 -25 227 346 47 9 chr15 68594924 68595031 -17100723 + L2 LINE L2 3160 3270 -2 523 248 8 30 chr15 68595044 68595177 -17100577 - L2 LINE L2 -16 3297 3168 2124 117 3 0 chr15 68595413 68595755 -17099999 - AluSx SINE Alu 0 343 1 182 250 104 0 chr15 68595877 68595925 -17099829 - L2 LINE L2 -2887 427 375 185 222 19 56 chr15 68596153 68596207 -17099547 + L2 LINE L2 3169 3220 -93 184 347 21 11 chr15 68596446 68596541 -17099213 - L2 LINE L2 -187 3085 2990 216 295 170 9 chr15 68597060 68597172 -17098582 + MIR3 SINE MIR 11 140 -68 546 220 99 7 chr15 68597244 68597385 -17098369 + MIR SINE MIR 7 160 -102 896 158 0 0 chr15 68597485 68597618 -17098136 + FLAM_C SINE Alu 1 133 0 1486 246 122 23 chr15 68597994 68598215 -17097539 + L1MC4 LINE L1 7368 7566 -476 185 0 40 0 chr15 68598215 68598240 -17097514 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1486 246 122 23 chr15 68598240 68598632 -17097122 + L1MC4 LINE L1 7566 8042 0 308 253 71 36 chr15 68599048 68599262 -17096492 - MIR SINE MIR -17 245 27 990 183 61 33 chr15 68599344 68599557 -17096197 - MER20 DNA MER1_type 0 219 1 1777 209 85 21 chr15 68599776 68600212 -17095542 + MLT2B1 LTR ERVL 1 464 -56 297 0 0 0 chr15 68600230 68600263 -17095491 + (CA)n Simple_repeat Simple_repeat 2 34 0 429 179 0 0 chr15 68600263 68600330 -17095424 + Tigger2 DNA MER2_type 3 69 -2649 2104 132 0 0 chr15 68600339 68600649 -17095105 + AluSg SINE Alu 1 310 0 2709 122 29 2 chr15 68600651 68601061 -17094693 + Tigger2 DNA MER2_type 2285 2705 -13 39 22 0 0 chr15 68601161 68601207 -17094547 + AT_rich Low_complexity Low_complexity 1 46 0 443 56 112 6 chr15 68601209 68601370 -17094384 + (TA)n Simple_repeat Simple_repeat 1 178 0 308 119 80 20 chr15 68601354 68601505 -17094249 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 * 314 273 92 78 chr15 68601506 68601799 -17093955 + L1ME4a LINE L1 5668 5964 -157 268 95 89 30 chr15 68601806 68601975 -17093779 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 274 144 63 35 chr15 68601958 68602132 -17093622 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 223 240 46 29 chr15 68602136 68602311 -17093443 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 * 398 169 64 29 chr15 68602186 68602358 -17093396 + (ATATG)n Simple_repeat Simple_repeat 2 179 0 293 45 0 23 chr15 68602397 68602441 -17093313 + (TA)n Simple_repeat Simple_repeat 2 44 0 815 190 193 68 chr15 68602583 68602894 -17092860 + MSTB2 LTR MaLR 15 364 -93 254 271 57 85 chr15 68603051 68603298 -17092456 - L2 LINE L2 -108 3164 2925 237 254 81 38 chr15 68603317 68603502 -17092252 + Charlie7 DNA MER1_type 2408 2600 -12 198 231 77 44 chr15 68603512 68603603 -17092151 - L2 LINE L2 -961 2353 2260 552 214 119 6 chr15 68603689 68603848 -17091906 - MER5B DNA MER1_type -1 177 1 537 240 20 7 chr15 68603857 68604007 -17091747 - Charlie2a DNA MER1_type -1 2861 2710 * 947 190 0 5 chr15 68604001 68604185 -17091569 - Charlie2a DNA MER1_type -1212 1650 1468 328 250 40 108 chr15 68604224 68604372 -17091382 - Charlie2b DNA MER1_type -2089 693 556 * 419 298 107 18 chr15 68604369 68604594 -17091160 - Charlie2b DNA MER1_type -2469 313 69 1381 229 69 29 chr15 68604594 68605288 -17090466 + L1ME LINE L1 4828 5562 -600 401 171 45 11 chr15 68605366 68605454 -17090300 + MER97b DNA MER1_type? 40 130 -923 * 1619 264 86 24 chr15 68605449 68605948 -17089806 - MLT1F LTR MaLR -8 534 5 2190 98 0 25 chr15 68606895 68607211 -17088543 - AluSx SINE Alu 0 312 5 467 313 24 62 chr15 68607698 68607906 -17087848 + L3b LINE CR1 1245 1444 -139 371 221 23 12 chr15 68608153 68608239 -17087515 + L2 LINE L2 2965 3051 -221 322 273 10 10 chr15 68608370 68608469 -17087285 + GA-rich Low_complexity Low_complexity 2 100 0 2157 117 0 0 chr15 68608906 68609215 -17086539 + AluSx SINE Alu 1 309 -3 394 227 81 115 chr15 68609246 68609594 -17086160 - L1ME4a LINE L1 -73 6048 5713 299 301 11 11 chr15 68609998 68610091 -17085663 - L2 LINE L2 -42 3271 3179 2600 120 32 2 chr15 68610368 68610776 -17084978 - LTR24C LTR ERV1 -4 631 212 3115 208 77 57 chr15 68610776 68610957 -17084797 + L1MB3 LINE L1 4307 4483 -1663 2159 87 0 29 chr15 68610957 68611313 -17084441 + AluSq SINE Alu 1 313 0 3115 208 77 57 chr15 68611313 68611449 -17084305 + L1MB3 LINE L1 4483 4615 -1531 2186 100 0 13 chr15 68611449 68611760 -17083994 + AluSg SINE Alu 2 308 -2 3115 208 77 57 chr15 68611760 68611801 -17083953 + L1MB3 LINE L1 4615 4654 -1492 2223 108 0 3 chr15 68611801 68612106 -17083648 + AluSq SINE Alu 1 304 -9 3115 208 77 57 chr15 68612106 68612233 -17083521 + L1MB3 LINE L1 4654 4777 -1369 1518 106 55 0 chr15 68612233 68612451 -17083303 - MER30 DNA MER1_type 0 230 1 3115 208 77 57 chr15 68612451 68612557 -17083197 + L1MB3 LINE L1 4777 4879 -1267 1854 143 0 23 chr15 68612557 68612864 -17082890 - AluJb SINE Alu -12 300 1 3115 208 77 57 chr15 68612864 68613238 -17082516 + L1MB3 LINE L1 4879 5296 -850 1328 141 15 0 chr15 68613231 68613437 -17082317 + L1MB3 LINE L1 5574 5782 -401 * 780 184 0 0 chr15 68613437 68613562 -17082192 + FLAM_C SINE Alu 5 129 -14 1769 123 28 3 chr15 68613592 68613876 -17081878 + L1MB3 LINE L1 5771 6061 -122 610 110 0 11 chr15 68613876 68613967 -17081787 + AluS SINE Alu 2 91 -221 844 259 75 14 chr15 68613967 68614297 -17081457 + MLT1F LTR MaLR 220 542 0 1575 177 0 7 chr15 68614712 68614994 -17080760 + AluJo SINE Alu 11 290 -22 21 0 0 0 chr15 68615002 68615023 -17080731 + AT_rich Low_complexity Low_complexity 1 21 0 288 175 62 38 chr15 68615237 68615317 -17080437 - MIR SINE MIR -109 153 72 444 306 20 14 chr15 68615597 68615744 -17080010 - MIR3 SINE MIR -41 167 20 410 214 154 8 chr15 68615787 68615904 -17079850 + MER94 DNA DNA 1 134 0 485 217 175 7 chr15 68616421 68616564 -17079190 - MER5A DNA MER1_type -6 183 17 782 164 110 12 chr15 68616792 68617003 -17078751 + MLT1H LTR MaLR 282 549 0 451 298 57 7 chr15 68617197 68617338 -17078416 + MLT1K LTR MaLR 148 295 -293 225 339 46 23 chr15 68617509 68617639 -17078115 + MLT1K LTR MaLR 436 568 -20 2070 133 0 3 chr15 68618377 68618679 -17077075 + AluSx SINE Alu 1 301 -11 1168 175 39 0 chr15 68618709 68618915 -17076839 + MLT1D LTR MaLR 292 505 0 491 246 18 0 chr15 68618915 68619025 -17076729 + MER5A DNA MER1_type 78 189 0 475 308 23 35 chr15 68619035 68619207 -17076547 - MER5B DNA MER1_type -2 176 7 33 56 0 0 chr15 68619382 68619436 -17076318 + AT_rich Low_complexity Low_complexity 1 54 0 478 268 51 32 chr15 68619500 68619657 -17076097 - MIR3 SINE MIR -29 179 20 494 181 150 8 chr15 68620296 68620429 -17075325 + MIR SINE MIR 53 204 -58 523 232 189 32 chr15 68620465 68620655 -17075099 + MIR SINE MIR 23 242 -20 693 171 122 0 chr15 68621555 68621678 -17074076 - MLT1A1 LTR MaLR 0 365 228 1288 159 39 0 chr15 68621919 68622126 -17073628 + MER1B DNA MER1_type 1 215 -82 462 145 0 48 chr15 68622123 68622206 -17073548 + MER1B DNA MER1_type 245 323 -6 * 486 299 81 7 chr15 68622224 68622508 -17073246 + L1M4 LINE L1 4028 4332 -1814 2286 91 7 0 chr15 68622552 68622859 -17072895 - AluSx SINE Alu -3 309 1 492 325 25 0 chr15 68622898 68623055 -17072699 - MIR SINE MIR -43 219 59 390 301 0 0 chr15 68623378 68623481 -17072273 - MIR SINE MIR -114 148 46 309 297 144 0 chr15 68623657 68623775 -17071979 - L2 LINE L2 -222 3050 2916 559 264 155 0 chr15 68624171 68624326 -17071428 - MER5A DNA MER1_type -1 188 10 547 321 84 9 chr15 68624341 68624556 -17071198 - MIR SINE MIR -9 253 23 1505 225 50 11 chr15 68624577 68624937 -17070817 + MLT1A2 LTR MaLR 1 374 0 2361 64 0 10 chr15 68625401 68625712 -17070042 + AluY SINE Alu 1 308 -3 996 138 69 16 chr15 68625950 68626139 -17069615 + MER63C DNA MER1_type 38 236 -694 343 212 26 9 chr15 68626162 68626275 -17069479 - L1MA4A LINE L1 0 6303 6189 3832 143 33 2 chr15 68626275 68626913 -17068841 - L1PB4 LINE L1 -98 6058 5401 397 192 104 33 chr15 68626913 68627034 -17068720 + MER63C DNA MER1_type 206 336 -594 2042 109 40 72 chr15 68627034 68627382 -17068372 - THE1B LTR MaLR 0 364 28 13328 39 3 2 chr15 68627382 68629021 -17066733 - L1P LINE L1 -2155 3991 2351 3594 33 9 0 chr15 68629006 68629428 -17066326 + L1P LINE L1 3995 4420 -1726 * 1064 118 0 0 chr15 68629428 68629582 -17066172 + AluSg/x SINE Alu 159 303 -9 313 236 133 31 chr15 68629593 68629788 -17065966 + L1MC5 LINE L1 7569 7783 -178 2390 109 0 0 chr15 68629921 68630232 -17065522 + AluSx SINE Alu 1 311 -1 587 259 87 60 chr15 68630302 68630433 -17065321 - MER58C DNA MER1_type -2226 194 55 1835 158 14 10 chr15 68630433 68630730 -17065024 + AluJb SINE Alu 1 298 -14 587 259 87 60 chr15 68630730 68630783 -17064971 - MER58C DNA MER1_type -2365 55 5 762 265 54 45 chr15 68630796 68631449 -17064305 + L1MEc LINE L1 974 1677 -4633 850 122 0 0 chr15 68631461 68631576 -17064178 + AluJo/FLAM SINE Alu 12 126 -186 813 55 0 31 chr15 68631575 68631703 -17064051 - AluYa5/8 SINE Alu -3 308 185 * 699 221 61 6 chr15 68631804 68631967 -17063787 + AluJb SINE Alu 140 311 -1 529 186 13 31 chr15 68631967 68632198 -17063556 + GA-rich Low_complexity Low_complexity 1 226 0 1290 146 45 0 chr15 68632456 68632676 -17063078 + L1MB4 LINE L1 5951 6180 0 2118 103 36 13 chr15 68632914 68633216 -17062538 + AluSx SINE Alu 1 309 -3 345 232 0 84 chr15 68633932 68634031 -17061723 - MIR SINE MIR -49 213 128 2454 82 3 0 chr15 68634031 68634336 -17061418 + AluSg1 SINE Alu 1 306 -3 345 232 0 84 chr15 68634336 68634378 -17061376 - MIR SINE MIR -134 128 84 598 205 154 0 chr15 68634659 68634815 -17060939 + MIR SINE MIR 83 262 0 347 193 0 0 chr15 68635155 68635212 -17060542 + AluS SINE Alu 1 57 -245 21 36 0 0 chr15 68635212 68635240 -17060514 + AT_rich Low_complexity Low_complexity 1 28 0 1961 102 58 31 chr15 68635625 68635919 -17059835 - AluSx SINE Alu -10 302 1 359 250 129 0 chr15 68636136 68636252 -17059502 - LTR67 LTR ERVL -3 554 424 750 259 35 6 chr15 68636435 68636609 -17059145 - LTR67 LTR ERVL -378 179 1 578 214 102 48 chr15 68636861 68637048 -17058706 - Charlie8 DNA MER1_type -2133 284 88 543 235 139 70 chr15 68637092 68637514 -17058240 - L1MC5 LINE L1 -37 7924 7446 270 0 0 0 chr15 68637514 68637544 -17058210 + (TG)n Simple_repeat Simple_repeat 2 31 0 543 235 139 70 chr15 68637544 68637733 -17058021 - L1MC5 LINE L1 -515 7446 7271 291 202 0 85 chr15 68637861 68637955 -17057799 - L1MC4 LINE L1 -796 7246 7161 288 77 0 0 chr15 68637955 68637994 -17057760 + (TCC)n Simple_repeat Simple_repeat 1 39 0 2032 137 7 3 chr15 68637994 68638286 -17057468 - AluJo SINE Alu -19 293 1 23 68 0 0 chr15 68638293 68638337 -17057417 + AT_rich Low_complexity Low_complexity 1 44 0 277 197 158 39 chr15 68638383 68638510 -17057244 + L1ME4a LINE L1 5965 6106 -15 240 185 0 0 chr15 68638518 68638572 -17057182 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 274 340 91 35 chr15 68639569 68639801 -17055953 + L2 LINE L2 2919 3163 -109 2531 61 0 0 chr15 68639856 68640153 -17055601 - AluY SINE Alu -14 297 1 2353 98 3 0 chr15 68640324 68640621 -17055133 + AluSp SINE Alu 1 298 -15 306 211 40 9 chr15 68640622 68640713 -17055041 + MIR SINE MIR 67 162 -46 1713 178 0 36 chr15 68640713 68641016 -17054738 + AluJo SINE Alu 1 292 -20 595 276 55 97 chr15 68641023 68641191 -17054563 + MLT1J LTR MaLR 29 202 -309 1797 165 6 19 chr15 68641191 68641507 -17054247 - AluJb SINE Alu 0 312 1 595 276 55 97 chr15 68641507 68641791 -17053963 + MLT1J LTR MaLR 202 462 -49 2156 108 30 7 chr15 68642004 68642300 -17053454 - AluSq SINE Alu -10 303 1 627 125 0 0 chr15 68642716 68642804 -17052950 - AluJ/FLAM SINE Alu -224 88 1 271 296 48 24 chr15 68643125 68643250 -17052504 + MIR SINE MIR 81 208 -54 1215 183 66 127 chr15 68643278 68643466 -17052288 + MLT1C LTR MaLR 1 199 -268 3138 114 37 8 chr15 68643466 68643949 -17051805 + L1PA11 LINE L1 5677 6173 -1 2370 91 3 0 chr15 68643957 68644255 -17051499 + AluSq SINE Alu 1 299 -14 1215 183 66 127 chr15 68644255 68644554 -17051200 + MLT1C LTR MaLR 206 467 0 763 206 0 0 chr15 68644887 68645018 -17050736 + FLAM_A SINE Alu 3 133 0 274 214 82 50 chr15 68645586 68645745 -17050009 - L1MC4 LINE L1 -53 7989 7826 2169 112 7 0 chr15 68645784 68646071 -17049683 - AluSg SINE Alu -21 289 1 1806 217 23 25 chr15 68646083 68646553 -17049201 - L1ME2 LINE L1 -10 6154 5686 459 261 8 8 chr15 68648255 68648374 -17047380 + MER5B DNA MER1_type 60 178 0 700 241 38 0 chr15 68648540 68648698 -17047056 + MER45A DNA AcHobo 1 164 -14 250 298 165 13 chr15 68649079 68649205 -17046549 + MIR SINE MIR 2 158 -104 2560 65 3 3 chr15 68649205 68649513 -17046241 + AluSp SINE Alu 3 310 -3 250 298 165 13 chr15 68649513 68649544 -17046210 + MIR SINE MIR 158 183 -79 7507 38 0 26 chr15 68650151 68651846 -17043908 - L1PA5 LINE L1 0 6154 4504 2767 220 81 25 chr15 68651897 68652061 -17043693 + L1MDa LINE L1 34 187 -6353 1694 162 3 73 chr15 68652061 68652261 -17043493 - AluJo SINE Alu -7 305 135 1996 117 3 23 chr15 68652261 68652560 -17043194 - AluSq SINE Alu -16 297 5 1694 162 3 73 chr15 68652560 68652687 -17043067 - AluJo SINE Alu -177 135 1 2767 220 81 25 chr15 68652687 68653286 -17042468 + L1MDa LINE L1 187 993 -5547 1810 164 43 69 chr15 68653286 68653490 -17042264 + L1MDa LINE L1 1814 2022 -4518 2295 111 0 0 chr15 68653490 68653797 -17041957 + AluSp SINE Alu 1 307 -6 1810 164 43 69 chr15 68653797 68654056 -17041698 + L1MDa LINE L1 2022 2265 -4275 553 154 0 2 chr15 68654294 68654549 -17041205 + AluJ SINE Alu 6 309 0 262 252 96 52 chr15 68654619 68654754 -17041000 - MIR3 SINE MIR -47 161 21 456 272 118 20 chr15 68654931 68655126 -17040628 + MIR SINE MIR 29 242 -20 320 314 103 48 chr15 68655188 68655386 -17040368 - L3 LINE CR1 -685 892 676 2467 72 0 7 chr15 68655386 68655691 -17040063 - AluY SINE Alu -8 303 1 320 314 103 48 chr15 68655691 68655744 -17040010 - L3 LINE CR1 -901 676 627 347 291 90 27 chr15 68655883 68656136 -17039618 + L1ME LINE L1 5511 5779 -342 1608 118 105 0 chr15 68656517 68656755 -17038999 - AluSx SINE Alu -16 296 34 305 97 0 5 chr15 68656816 68656875 -17038879 + Alu SINE Alu 1 43 -259 2334 88 0 7 chr15 68656981 68657287 -17038467 + AluY SINE Alu 1 304 -7 418 273 58 6 chr15 68657527 68657699 -17038055 + MIR SINE MIR 2 182 -80 764 186 153 0 chr15 68658202 68658417 -17037337 - MER5C DNA MER1_type 0 324 77 906 254 30 39 chr15 68658463 68658801 -17036953 + L1MC4a LINE L1 5603 5937 -1871 454 226 170 75 chr15 68659081 68659156 -17036598 + L1ME4a LINE L1 5533 5599 -522 741 258 6 6 chr15 68659156 68659319 -17036435 + FAM SINE Alu 4 166 -9 454 226 170 75 chr15 68659319 68659549 -17036205 + L1ME4a LINE L1 5599 5867 -254 364 199 199 0 chr15 68659581 68659717 -17036037 + L1ME4a LINE L1 5959 6121 0 575 271 110 8 chr15 68660115 68660351 -17035403 - L2 LINE L2 -111 3202 2943 453 207 43 26 chr15 68660792 68660908 -17034846 + MIR SINE MIR 110 227 -35 2492 50 0 13 chr15 68661024 68661325 -17034429 + AluY SINE Alu 1 297 -14 260 284 11 42 chr15 68663690 68663785 -17031969 + L2 LINE L2 2930 3021 -251 32 43 0 0 chr15 68664001 68664047 -17031707 + AT_rich Low_complexity Low_complexity 1 46 0 273 29 0 0 chr15 68664154 68664188 -17031566 + (TG)n Simple_repeat Simple_repeat 2 35 0 342 248 31 31 chr15 68664665 68664794 -17030960 + MLT1H LTR MaLR 114 242 -307 694 316 79 60 chr15 68664833 68665261 -17030493 - L1MC/D LINE L1 -759 5387 4969 2265 89 0 32 chr15 68665261 68665576 -17030178 - AluSx SINE Alu -7 305 1 694 316 79 60 chr15 68665576 68666326 -17029428 - L1MC/D LINE L1 -1177 4969 4412 408 88 0 0 chr15 68666596 68666653 -17029101 + (CA)n Simple_repeat Simple_repeat 1 57 0 315 263 68 25 chr15 68667025 68667143 -17028611 - LTR67 LTR ERVL -2 555 433 195 42 0 0 chr15 68667728 68667752 -17028002 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2123 112 4 0 chr15 68667756 68668034 -17027720 - AluSx SINE Alu -33 279 1 1930 166 47 3 chr15 68668162 68668524 -17027230 - L1MB5 LINE L1 -9 6165 5788 989 176 21 51 chr15 68668632 68668851 -17026903 - L1MB5 LINE L1 -594 5580 5366 2364 70 3 51 chr15 68668899 68669215 -17026539 - AluSp SINE Alu -12 301 1 275 344 44 12 chr15 68670356 68670516 -17025238 - MIR SINE MIR -70 192 28 2050 106 39 3 chr15 68670968 68671251 -17024503 - AluSq SINE Alu -20 293 1 1765 155 46 0 chr15 68671320 68671443 -17024311 + AluJo SINE Alu 1 117 -195 225 0 0 0 chr15 68671443 68671468 -17024286 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 1765 155 46 0 chr15 68671468 68671628 -17024126 + AluJo SINE Alu 117 297 -15 225 65 0 0 chr15 68671986 68672017 -17023737 + (TG)n Simple_repeat Simple_repeat 1 31 0 1774 187 17 0 chr15 68673368 68673667 -17022087 - AluJb SINE Alu -8 304 1 2285 96 3 10 chr15 68676372 68676674 -17019080 + AluSq SINE Alu 1 300 -13 276 30 0 0 chr15 68676720 68676753 -17019001 + (TTCTG)n Simple_repeat Simple_repeat 1 33 0 222 207 0 0 chr15 68676981 68677039 -17018715 + GA-rich Low_complexity Low_complexity 3 60 0 195 42 0 0 chr15 68677439 68677463 -17018291 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr15 68677508 68677532 -17018222 + AT_rich Low_complexity Low_complexity 1 24 0 1323 265 112 35 chr15 68677832 68678463 -17017291 + L1MC4a LINE L1 4490 4804 -1342 2550 56 0 7 chr15 68678463 68678766 -17016988 + AluY SINE Alu 1 301 -10 1323 265 112 35 chr15 68678766 68679410 -17016344 + L1MC4a LINE L1 4804 5397 -749 332 284 178 13 chr15 68679997 68680222 -17015532 - L1ME4a LINE L1 -66 6055 5794 195 192 364 10 chr15 68680255 68680354 -17015400 - MIR SINE MIR -10 252 119 861 272 111 37 chr15 68680590 68681105 -17014649 - HAL1 LINE L1 -90 2417 1865 296 342 125 0 chr15 68681423 68681607 -17014147 - L2 LINE L2 -557 2757 2551 865 245 42 72 chr15 68681699 68681732 -17014022 + MLT1I LTR MaLR 88 120 -289 1525 117 31 5 chr15 68681732 68681954 -17013800 + MER30 DNA MER1_type 1 228 -2 1472 72 10 5 chr15 68681956 68682149 -17013605 - MER107 DNA MER1_type 0 197 4 865 245 42 72 chr15 68682149 68682443 -17013311 + MLT1I LTR MaLR 121 408 -1 556 299 87 39 chr15 68682724 68682955 -17012799 - MIR SINE MIR 0 262 21 275 305 90 59 chr15 68683500 68683821 -17011933 + L2 LINE L2 2341 2671 -643 402 74 0 0 chr15 68684854 68684908 -17010846 + (TA)n Simple_repeat Simple_repeat 2 55 0 481 202 121 0 chr15 68686908 68687007 -17008747 - MER81 DNA DNA -1 113 3 2064 96 0 30 chr15 68687333 68687498 -17008256 - AluSc SINE Alu -17 292 139 2330 78 0 0 chr15 68687498 68687794 -17007960 - AluSq SINE Alu -17 296 1 2064 96 0 30 chr15 68687794 68687929 -17007825 - AluSc SINE Alu -170 139 1 1610 177 9 40 chr15 68688693 68689015 -17006739 + AluJb SINE Alu 1 312 0 1634 166 7 11 chr15 68690471 68690754 -17005000 + AluJo SINE Alu 1 282 -30 424 215 51 1 chr15 68691031 68691135 -17004619 + L1ME3 LINE L1 6064 6170 0 368 309 88 52 chr15 68691311 68691505 -17004249 - MIR3 SINE MIR -7 201 1 282 218 18 0 chr15 68691761 68691816 -17003938 - U7 snRNA snRNA -1 62 7 2111 101 0 24 chr15 68691822 68692120 -17003634 + AluSg SINE Alu 7 297 -13 230 273 32 44 chr15 68692999 68693158 -17002596 + MIR SINE MIR 101 258 -4 2036 105 44 3 chr15 68694129 68694425 -17001329 + AluSx SINE Alu 1 308 -4 2114 105 0 0 chr15 68695280 68695565 -17000189 + AluSx SINE Alu 6 290 -22 555 16 0 0 chr15 68697169 68697233 -16998521 + (CA)n Simple_repeat Simple_repeat 2 65 0 2032 122 6 3 chr15 68697818 68698130 -16997624 + AluSq SINE Alu 1 313 0 985 261 46 0 chr15 68699578 68699819 -16995935 - MIR SINE MIR -8 254 3 272 232 15 25 chr15 68699877 68699958 -16995796 - MIR SINE MIR -103 105 42 1105 179 49 42 chr15 68700208 68700471 -16995283 + Charlie8 DNA MER1_type 1 265 -2152 27 62 0 0 chr15 68700621 68700669 -16995085 + AT_rich Low_complexity Low_complexity 1 48 0 1009 249 71 62 chr15 68700872 68701225 -16994529 + MLT1J LTR MaLR 111 466 -45 1634 134 86 10 chr15 68702239 68702529 -16993225 + AluSx SINE Alu 1 312 0 1153 147 29 0 chr15 68702558 68702762 -16992992 - MER2 DNA MER2_type -135 210 1 652 244 11 44 chr15 68703509 68703689 -16992065 + MIR3 SINE MIR 29 202 -6 1255 222 66 26 chr15 68704041 68704419 -16991335 + MLT1C LTR MaLR 9 401 -66 215 234 141 0 chr15 68704930 68704994 -16990760 + MIR SINE MIR 82 154 -108 482 147 101 9 chr15 68705708 68705817 -16989937 - MLT1C LTR MaLR -340 127 9 1805 121 61 4 chr15 68706289 68706569 -16989185 - AluSq SINE Alu -17 296 1 747 180 0 43 chr15 68706599 68706738 -16989016 + FLAM_C SINE Alu 1 133 0 305 330 96 0 chr15 68709072 68709187 -16986567 + MIR SINE MIR 20 145 -117 2065 93 3 3 chr15 68711724 68712013 -16983741 - AluSg SINE Alu -21 289 1 237 339 0 0 chr15 68712134 68712199 -16983555 + MIR SINE MIR 32 96 -166 779 128 0 17 chr15 68712199 68712316 -16983438 + FRAM SINE Alu 49 163 -13 1692 134 58 18 chr15 68712686 68712963 -16982791 - AluSx SINE Alu -24 288 1 1652 165 0 47 chr15 68712963 68713285 -16982469 - AluJo SINE Alu -5 307 1 217 197 239 0 chr15 68713479 68713550 -16982204 - MIR SINE MIR -65 197 110 195 267 33 50 chr15 68714180 68714240 -16981514 + L2 LINE L2 3210 3268 -4 1729 146 45 0 chr15 68714423 68714710 -16981044 + AluJb SINE Alu 3 302 -10 314 240 73 0 chr15 68714732 68714828 -16980926 + L1MC5 LINE L1 5868 5970 -1838 1364 209 38 72 chr15 68714979 68715476 -16980278 + L1MC5 LINE L1 7430 7909 -52 21 36 0 0 chr15 68716209 68716237 -16979517 + AT_rich Low_complexity Low_complexity 1 28 0 2089 122 0 3 chr15 68717515 68717818 -16977936 - AluSx SINE Alu -8 304 3 2016 105 0 3 chr15 68717862 68718176 -16977578 - AluSx SINE Alu 0 313 1 640 124 41 0 chr15 68718351 68718448 -16977306 + AluSp/q SINE Alu 176 276 -37 2090 100 33 3 chr15 68719130 68719430 -16976324 + AluSx SINE Alu 1 309 -3 296 203 40 27 chr15 68719813 68719887 -16975867 + L1MC4a LINE L1 5857 5931 -1877 37 76 0 0 chr15 68720090 68720169 -16975585 + AT_rich Low_complexity Low_complexity 1 79 0 1272 221 8 12 chr15 68722199 68722452 -16973302 - MIR SINE MIR -1 261 10 240 280 10 26 chr15 68722564 68722651 -16973103 + MIR3 SINE MIR 82 167 -49 231 278 92 64 chr15 68723306 68723479 -16972275 - L3 LINE CR1 -20 1557 1380 234 230 46 58 chr15 68723528 68723615 -16972139 - L3 LINE CR1 -195 1382 1297 486 282 198 10 chr15 68724864 68725066 -16970688 + MIR SINE MIR 20 259 -3 497 157 9 56 chr15 68725824 68725905 -16969849 + L1MA8 LINE L1 6163 6239 -52 1712 136 48 0 chr15 68725905 68726178 -16969576 + AluJo SINE Alu 6 291 -21 497 157 9 56 chr15 68726178 68726204 -16969550 + L1MA8 LINE L1 6239 6265 -26 247 68 91 0 chr15 68726210 68726254 -16969500 + L1MA8 LINE L1 6239 6286 -5 21 0 0 0 chr15 68726254 68726275 -16969479 + AT_rich Low_complexity Low_complexity 1 21 0 2055 112 20 0 chr15 68726275 68726571 -16969183 + AluSx SINE Alu 1 302 -10 757 276 29 34 chr15 68727618 68727857 -16967897 + MIR SINE MIR 15 252 -10 445 119 0 110 chr15 68727958 68728003 -16967751 - L1MC2 LINE L1 0 6344 6316 2046 119 3 0 chr15 68728003 68728296 -16967458 + AluSx SINE Alu 1 294 -18 445 119 0 110 chr15 68728296 68728359 -16967395 - L1MC2 LINE L1 -28 6316 6248 180 0 0 0 chr15 68728372 68728392 -16967362 + (T)n Simple_repeat Simple_repeat 1 20 0 407 170 19 94 chr15 68728931 68729037 -16966717 - MER94 DNA DNA -29 105 8 204 200 0 0 chr15 68729086 68729131 -16966623 + (CA)n Simple_repeat Simple_repeat 2 46 0 2070 100 0 35 chr15 68729447 68729758 -16965996 + AluSx SINE Alu 1 300 -12 412 222 8 8 chr15 68730295 68730412 -16965342 + MER113 DNA MER1_type? 8 124 -397 1190 132 112 0 chr15 68730435 68730632 -16965122 + MER20 DNA MER1_type 1 219 0 1706 146 54 0 chr15 68730723 68731017 -16964737 - AluSx SINE Alu -2 310 1 1455 132 4 71 chr15 68731138 68731283 -16964471 + L1MB3 LINE L1 5683 5801 -382 1866 123 3 63 chr15 68731283 68731600 -16964154 + AluJo SINE Alu 1 298 -14 1455 132 4 71 chr15 68731600 68731734 -16964020 + L1MB3 LINE L1 5801 5943 -240 1125 133 0 12 chr15 68731734 68731907 -16963847 + AluSg/x SINE Alu 130 300 -12 5590 221 11 14 chr15 68731916 68733043 -16962711 - L1M4b LINE L1 -5725 1134 11 376 123 0 0 chr15 68733045 68733102 -16962652 - MER4D LTR ERV1 0 872 816 746 165 19 169 chr15 68733202 68733569 -16962185 - MER4A LTR ERV1 -72 393 275 1965 134 19 7 chr15 68733569 68733876 -16961878 + AluSq SINE Alu 1 311 -2 746 165 19 169 chr15 68733876 68733998 -16961756 - MER4A LTR ERV1 -190 275 136 308 294 0 0 chr15 68734048 68734133 -16961621 + L1ME LINE L1 5667 5751 -419 666 127 25 17 chr15 68734135 68734253 -16961501 - MER4C LTR ERV1 -346 119 1 448 378 61 4 chr15 68734289 68734535 -16961219 - L2 LINE L2 -606 2708 2449 729 282 29 21 chr15 68734883 68735124 -16960630 - MIR SINE MIR -2 260 18 1835 210 73 27 chr15 68735125 68735606 -16960148 + L1ME3A LINE L1 5668 6170 0 632 225 161 54 chr15 68735704 68735830 -16959924 + L1MC5 LINE L1 7476 7587 -374 1751 145 4 4 chr15 68735830 68736129 -16959625 + AluJb SINE Alu 13 311 0 632 225 161 54 chr15 68736129 68736392 -16959362 + L1MC5 LINE L1 7587 7908 -53 219 332 54 62 chr15 68736892 68737281 -16958473 + L2 LINE L2 2682 3069 -203 505 229 38 66 chr15 68738066 68738213 -16957541 - MER5B DNA MER1_type 0 178 35 2028 101 3 7 chr15 68738213 68738510 -16957244 - AluSq SINE Alu -17 296 1 505 229 38 66 chr15 68738510 68738545 -16957209 - MER5B DNA MER1_type -143 35 1 476 208 182 6 chr15 68738635 68738794 -16956960 + MER5A DNA MER1_type 3 189 0 375 246 269 0 chr15 68738813 68738947 -16956807 + MER5A DNA MER1_type 14 183 -6 1926 87 11 8 chr15 68739026 68739291 -16956463 + AluSx SINE Alu 22 287 -25 774 125 39 0 chr15 68739494 68739622 -16956132 + MER53 DNA DNA 1 133 -56 26 50 0 0 chr15 68739656 68739696 -16956058 + AT_rich Low_complexity Low_complexity 1 40 0 394 152 0 0 chr15 68739708 68739774 -16955980 + MER53 DNA DNA 124 189 0 335 123 62 31 chr15 68739908 68739973 -16955781 - MLT1I LTR MaLR -4 405 339 444 233 0 0 chr15 68739995 68740115 -16955639 + C-rich Low_complexity Low_complexity 5 124 0 1963 137 0 0 chr15 68740115 68740408 -16955346 - AluSx SINE Alu -19 293 1 476 268 141 45 chr15 68740408 68740563 -16955191 - MLT1I LTR MaLR -71 338 154 449 196 36 36 chr15 68740563 68740675 -16955079 + MER81 DNA DNA 3 114 0 476 268 141 45 chr15 68740675 68740739 -16955015 - MLT1I LTR MaLR -255 154 98 2670 152 17 53 chr15 68740789 68741166 -16954588 + LTR32 LTR ERVL 15 373 -98 2262 91 0 3 chr15 68741166 68741464 -16954290 - AluSq SINE Alu -16 297 1 2670 152 17 53 chr15 68741464 68741560 -16954194 + LTR32 LTR ERVL 373 471 0 267 200 0 0 chr15 68741964 68742009 -16953745 + MER5A DNA MER1_type 57 101 -88 1267 253 73 26 chr15 68742259 68742599 -16953155 + MLT1I LTR MaLR 44 399 -10 2298 105 0 0 chr15 68742622 68742927 -16952827 + AluSx SINE Alu 1 305 -7 282 221 26 13 chr15 68742927 68743004 -16952750 + L1ME3A LINE L1 5874 5951 -219 1580 174 3 20 chr15 68743190 68743489 -16952265 + AluJo SINE Alu 17 310 -2 2012 91 0 11 chr15 68743571 68743847 -16951907 + AluSg SINE Alu 37 309 -1 1894 226 83 15 chr15 68743872 68744351 -16951403 + MLT1G LTR MaLR 77 588 -2 234 0 0 0 chr15 68744379 68744405 -16951349 + (TG)n Simple_repeat Simple_repeat 1 26 0 4186 89 13 49 chr15 68744911 68745539 -16950215 + LTR14B LTR ERVK 4 608 0 2262 149 71 25 chr15 68746023 68746459 -16949295 + MLT1C LTR MaLR 6 461 -6 376 274 61 46 chr15 68747621 68747818 -16947936 + L1ME3A LINE L1 5963 6162 -8 262 296 47 28 chr15 68747822 68748035 -16947719 + L1ME4a LINE L1 5691 5907 -214 2205 78 0 29 chr15 68748074 68748382 -16947372 + AluY SINE Alu 1 299 -12 315 220 0 80 chr15 68748486 68748586 -16947168 - AluJ SINE Alu -63 239 148 687 179 0 0 chr15 68748586 68748703 -16947051 - AluJ SINE Alu -184 118 2 257 222 231 40 chr15 68748703 68748928 -16946826 + L1ME4a LINE L1 5751 6018 -103 2074 135 3 0 chr15 68748938 68749249 -16946505 - AluSx SINE Alu 0 312 1 2013 119 0 7 chr15 68749312 68749607 -16946147 - AluSx SINE Alu -16 296 4 366 25 0 0 chr15 68750289 68750329 -16945425 - MLT1C LTR MaLR 0 467 428 2135 101 3 0 chr15 68750384 68750680 -16945074 + AluY SINE Alu 1 297 -14 1531 149 36 18 chr15 68750849 68751072 -16944682 - MLT1C LTR MaLR -45 422 192 381 70 0 0 chr15 68751072 68751129 -16944625 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1531 149 36 18 chr15 68751129 68751181 -16944573 - MLT1C LTR MaLR -275 192 142 2657 74 40 6 chr15 68751782 68752132 -16943622 - THE1B LTR MaLR -2 362 1 217 152 0 0 chr15 68752348 68752381 -16943373 - L2 LINE L2 -19 3294 3262 2086 105 0 0 chr15 68752414 68752699 -16943055 - AluSq SINE Alu -28 285 1 236 304 0 14 chr15 68752699 68752768 -16942986 + L2 LINE L2 3186 3253 -19 43314 34 24 1 chr15 68753733 68759801 -16935953 + L1PA3 LINE L1 1 6209 0 243 146 0 0 chr15 68759871 68759912 -16935842 + (TCC)n Simple_repeat Simple_repeat 3 43 0 717 123 11 48 chr15 68760014 68760201 -16935553 + (TCC)n Simple_repeat Simple_repeat 1 180 0 255 204 0 0 chr15 68760202 68760256 -16935498 + CT-rich Low_complexity Low_complexity 3 56 0 848 185 0 0 chr15 68760264 68760410 -16935344 - FRAM SINE Alu -30 146 1 1823 141 0 64 chr15 68760722 68761049 -16934705 + AluSx SINE Alu 1 306 -6 414 0 0 0 chr15 68761056 68761102 -16934652 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 194 125 0 25 chr15 68761102 68761142 -16934612 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 773 284 28 20 chr15 68761410 68761660 -16934094 + MIR SINE MIR 1 252 -10 218 333 0 0 chr15 68762085 68762148 -16933606 - MIR SINE MIR -163 99 37 819 252 145 29 chr15 68762347 68762770 -16932984 - MLT1G1 LTR MaLR -26 569 42 2223 100 0 0 chr15 68763114 68763414 -16932340 + AluSc SINE Alu 1 300 -9 478 205 131 25 chr15 68763733 68763855 -16931899 - L2 LINE L2 0 3272 3138 2188 109 0 0 chr15 68763894 68764196 -16931558 + AluSx SINE Alu 1 302 -10 195 265 22 47 chr15 68764242 68764333 -16931421 + L2 LINE L2 2906 2990 -282 192 267 189 11 chr15 68764447 68764537 -16931217 + L2 LINE L2 3122 3227 -86 1717 123 13 47 chr15 68764632 68764933 -16930821 + AluJb SINE Alu 1 291 -21 209 33 33 0 chr15 68766013 68766043 -16929711 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 2289 77 13 0 chr15 68766119 68766417 -16929337 - AluSx SINE Alu -10 302 1 432 175 50 0 chr15 68766492 68766572 -16929182 - HsTC2c DNA Tc2 -1 728 645 3135 186 19 50 chr15 68766572 68767534 -16928220 + L1MC/D LINE L1 4653 5567 -766 1782 171 6 16 chr15 68767534 68767849 -16927905 - AluJo SINE Alu 0 312 1 3135 186 19 50 chr15 68767849 68768074 -16927680 + L1MC/D LINE L1 5567 5798 -535 879 183 25 50 chr15 68768074 68768096 -16927658 - HsTC2c DNA Tc2 -1217 681 660 1253 111 26 0 chr15 68768096 68768286 -16927468 + L1MC1 LINE L1 6139 6333 0 879 183 25 50 chr15 68768286 68768465 -16927289 - HsTC2c DNA Tc2 -1238 660 485 376 238 157 81 chr15 68768491 68768565 -16927189 + MER5A DNA MER1_type 5 72 -117 2301 90 0 3 chr15 68768565 68768875 -16926879 + AluSg SINE Alu 1 309 -1 376 238 157 81 chr15 68768875 68768972 -16926782 + MER5A DNA MER1_type 72 189 0 1834 192 61 15 chr15 68768979 68769374 -16926380 - HsTC2c DNA Tc2 -316 413 1 2047 133 0 0 chr15 68769557 68769850 -16925904 + AluSq SINE Alu 9 301 -12 1803 145 37 0 chr15 68769862 68770158 -16925596 + AluJb SINE Alu 1 307 -5 204 269 0 0 chr15 68770345 68770397 -16925357 - L3 LINE CR1 -754 823 772 973 147 0 137 chr15 68770403 68770465 -16925289 - MER5A DNA MER1_type -3 186 117 2154 117 7 0 chr15 68770465 68770773 -16924981 + AluSx SINE Alu 2 311 -1 973 147 0 137 chr15 68770773 68770914 -16924840 - MER5A DNA MER1_type -72 117 11 638 321 159 19 chr15 68770928 68771249 -16924505 - L3 LINE CR1 -803 774 409 4541 121 193 30 chr15 68771470 68772791 -16922963 + pTR5 LTR ERV1 739 2438 0 439 309 38 89 chr15 68772795 68773164 -16922590 - MLT1I LTR MaLR -21 388 39 2061 91 6 72 chr15 68773686 68774004 -16921750 + AluSx SINE Alu 1 297 -15 239 331 6 11 chr15 68774087 68774268 -16921486 - L1 LINE L1 -1085 5061 4882 531 233 124 39 chr15 68774318 68774785 -16920969 - L1 LINE L1 -2862 3284 2778 1340 186 14 25 chr15 68774868 68775143 -16920611 + AluJo SINE Alu 1 272 -40 2405 121 13 24 chr15 68775176 68775555 -16920199 - THE1C LTR MaLR 0 375 1 2001 130 3 0 chr15 68775674 68775981 -16919773 + AluSx SINE Alu 1 308 -4 596 193 67 0 chr15 68776126 68776245 -16919509 - AluSg/x SINE Alu -3 309 183 909 74 0 0 chr15 68776346 68776468 -16919286 + AluSg/x SINE Alu 176 297 -13 1183 137 119 9 chr15 68776470 68776697 -16919057 + L1MB3 LINE L1 5771 6022 -161 499 129 0 0 chr15 68776697 68776767 -16918987 + MER1B DNA MER1_type 1 70 -267 582 100 22 22 chr15 68776794 68776884 -16918870 + MER1B DNA MER1_type 231 320 -19 932 163 11 16 chr15 68776884 68777068 -16918686 + L1MB4 LINE L1 5998 6180 0 274 103 0 35 chr15 68777103 68777161 -16918593 + (TG)n Simple_repeat Simple_repeat 1 56 0 406 259 24 35 chr15 68777194 68777364 -16918390 + L1ME4a LINE L1 5952 6119 -2 2123 123 0 0 chr15 68777420 68777720 -16918034 + AluSx SINE Alu 1 300 -12 1773 137 16 26 chr15 68778002 68778315 -16917439 + AluJb SINE Alu 3 312 0 1898 156 0 3 chr15 68778814 68779109 -16916645 + AluJb SINE Alu 1 294 -18 1942 133 11 61 chr15 68779129 68779246 -16916508 - L1PA16 LINE L1 -22 6144 6023 2217 94 3 10 chr15 68779246 68779554 -16916200 - AluSq SINE Alu -7 306 1 1942 133 11 61 chr15 68779554 68779796 -16915958 - L1PA16 LINE L1 -143 6023 5803 295 291 80 13 chr15 68779854 68780005 -16915749 + L1ME4a LINE L1 5961 6121 0 2152 118 0 0 chr15 68780298 68780603 -16915151 + AluSq SINE Alu 1 305 -8 1768 230 77 41 chr15 68782169 68782703 -16913051 + MER115 DNA AcHobo 140 692 -1 2337 75 3 3 chr15 68783473 68783779 -16911975 + AluSq SINE Alu 1 306 -7 427 291 26 0 chr15 68783852 68783969 -16911785 - MIR SINE MIR -83 179 60 1611 103 0 4 chr15 68784020 68784254 -16911500 - AluY SINE Alu -5 306 74 309 109 0 0 chr15 68785603 68785649 -16910105 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 2223 89 0 0 chr15 68786023 68786315 -16909439 + AluY SINE Alu 1 292 -19 2328 233 35 24 chr15 68786385 68786934 -16908820 + MLT1E LTR MaLR 1 555 -38 1139 190 49 2 chr15 68786946 68787225 -16908529 - MER2 DNA MER2_type 0 345 7 452 245 106 13 chr15 68787240 68787391 -16908363 - L1MEd LINE L1 -4956 1163 999 1770 140 3 17 chr15 68787391 68787691 -16908063 - AluJb SINE Alu -16 296 1 685 264 43 21 chr15 68787739 68787974 -16907780 - L1MEd LINE L1 -5273 846 607 245 280 57 9 chr15 68788307 68788496 -16907258 - L1M4 LINE L1 -3890 2492 2296 22 56 0 0 chr15 68788716 68788752 -16907002 + AT_rich Low_complexity Low_complexity 1 36 0 1570 119 103 4 chr15 68788841 68789130 -16906624 - AluSx SINE Alu 0 315 1 2197 220 86 4 chr15 68789131 68789609 -16906145 - MLT1F1 LTR MaLR -50 517 1 2506 65 0 0 chr15 68789837 68790146 -16905608 + AluSq SINE Alu 1 309 -4 2099 117 0 0 chr15 68790899 68791199 -16904555 + AluSx SINE Alu 1 300 -12 224 396 4 35 chr15 68791470 68791730 -16904024 - L3 LINE CR1 -1139 438 105 1585 167 0 65 chr15 68791875 68792199 -16903555 + AluJb SINE Alu 1 303 -9 2117 116 7 0 chr15 68792227 68792537 -16903217 - AluSp SINE Alu -1 312 1 465 263 0 0 chr15 68792613 68792712 -16903042 + MIR3 SINE MIR 79 177 -31 2115 106 0 0 chr15 68792771 68793087 -16902667 + AluSq SINE Alu 1 316 0 318 266 53 71 chr15 68793537 68793706 -16902048 + MLT1K LTR MaLR 418 583 -5 1896 147 3 3 chr15 68793991 68794290 -16901464 + AluSx SINE Alu 1 299 -13 451 189 120 114 chr15 68795040 68795215 -16900539 + MER5B DNA MER1_type 1 176 -2 1947 153 37 16 chr15 68795683 68796062 -16899692 - L1MA8 LINE L1 -3 6288 5902 2057 113 3 32 chr15 68796664 68796974 -16898780 + AluSx SINE Alu 1 301 -11 2171 170 27 25 chr15 68797063 68797588 -16898166 - L1MB7 LINE L1 -31 6153 5115 * 6673 187 48 21 chr15 68797572 68798729 -16897025 - L1M4 LINE L1 -413 5771 4540 2087 116 3 0 chr15 68798729 68799021 -16896733 + AluSx SINE Alu 1 293 -19 6673 187 48 21 chr15 68799021 68799821 -16895933 - L1M4 LINE L1 -1644 4540 3764 2024 138 0 0 chr15 68799941 68800237 -16895517 - AluSx SINE Alu -16 296 1 4629 50 22 27 chr15 68800413 68800668 -16895086 - LTR10C LTR ERV1 0 591 336 2255 65 7 3 chr15 68800668 68800961 -16894793 - AluY SINE Alu -14 297 4 4629 50 22 27 chr15 68800961 68801299 -16894455 - LTR10C LTR ERV1 -255 336 1 1380 276 93 30 chr15 68801432 68801625 -16894129 + MLT1G1 LTR MaLR 4 183 -412 2230 108 0 0 chr15 68801625 68801932 -16893822 - AluSx SINE Alu -5 307 1 1380 276 93 30 chr15 68801932 68802295 -16893459 + MLT1G1 LTR MaLR 183 595 0 324 215 54 65 chr15 68802371 68802464 -16893290 - HAL1b LINE L1 -510 838 747 786 172 81 102 chr15 68802516 68802731 -16893023 + MER33 DNA MER1_type 1 203 -2382 1747 158 17 7 chr15 68802731 68803029 -16892725 + AluJb SINE Alu 1 301 -11 786 172 81 102 chr15 68803029 68803091 -16892663 + MER33 DNA MER1_type 203 265 -59 2716 206 49 7 chr15 68803091 68803678 -16892076 - MER50 LTR ERV1 0 734 123 834 188 30 12 chr15 68803696 68803861 -16891893 - MER50 LTR ERV1 -566 168 1 2016 109 0 0 chr15 68803896 68804170 -16891584 + AluSg SINE Alu 5 278 -32 287 0 0 50 chr15 68804170 68804210 -16891544 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 2003 135 10 0 chr15 68804268 68804572 -16891182 + AluSx SINE Alu 1 307 -5 1552 189 113 74 chr15 68804577 68805063 -16890691 + MLT1D LTR MaLR 1 505 0 2177 90 3 0 chr15 68805109 68805398 -16890356 + AluSx SINE Alu 1 290 -22 410 235 17 9 chr15 68805525 68805640 -16890114 + L1ME2 LINE L1 5968 6083 -81 475 183 9 9 chr15 68805642 68805757 -16889997 - Charlie5 DNA MER1_type 0 2619 2505 266 219 0 0 chr15 68805761 68805840 -16889914 + L1ME3 LINE L1 6086 6162 0 1601 176 21 0 chr15 68805842 68806131 -16889623 + AluJb SINE Alu 1 295 -17 1985 66 0 0 chr15 68806134 68806378 -16889376 + AluY SINE Alu 58 301 -10 23 0 0 0 chr15 68806378 68806401 -16889353 + AT_rich Low_complexity Low_complexity 1 23 0 191 111 0 28 chr15 68806401 68806437 -16889317 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 483 261 93 79 chr15 68806814 68807094 -16888660 - HAL1 LINE L1 -941 1566 1283 2093 91 0 21 chr15 68807113 68807398 -16888356 - AluSg SINE Alu -30 280 2 193 140 40 0 chr15 68807419 68807442 -16888312 + CT-rich Low_complexity Low_complexity 2 23 -30 2140 109 0 3 chr15 68807442 68807746 -16888008 - AluSq SINE Alu -10 303 1 193 140 40 0 chr15 68807746 68807772 -16887982 + CT-rich Low_complexity Low_complexity 23 53 0 264 125 56 28 chr15 68808371 68808443 -16887311 + GA-rich Low_complexity Low_complexity 3 76 0 306 222 202 0 chr15 68808863 68808962 -16886792 - MLT2C1 LTR ERVL -49 348 230 810 247 83 35 chr15 68808966 68809158 -16886596 - MLT1I LTR MaLR -39 370 156 2210 109 111 76 chr15 68809158 68809306 -16886448 + MER4C LTR ERV1 1 142 -323 2058 110 13 13 chr15 68809306 68809614 -16886140 + AluSc SINE Alu 1 308 -1 2210 109 111 76 chr15 68809614 68809914 -16885840 + MER4C LTR ERV1 142 465 0 810 247 83 35 chr15 68809914 68810033 -16885721 - MLT1I LTR MaLR -253 156 44 699 174 0 0 chr15 68810705 68810874 -16884880 + FLAM_A SINE Alu 1 169 0 1134 123 5 82 chr15 68810884 68811103 -16884651 + LTR62 LTR ERVK 1 202 -517 1532 115 0 0 chr15 68811103 68811311 -16884443 + AluSg SINE Alu 1 208 -102 1439 232 45 110 chr15 68811311 68811927 -16883827 - LTR9 LTR ERV1 -36 576 1 2207 126 62 40 chr15 68811927 68812004 -16883750 + LTR62 LTR ERVK 232 306 -413 2217 85 0 3 chr15 68812004 68812299 -16883455 - AluSg SINE Alu -16 294 1 2207 126 62 40 chr15 68812299 68812643 -16883111 + LTR62 LTR ERVK 306 662 -57 2571 120 95 19 chr15 68812643 68812792 -16882962 + MER4C LTR ERV1 1 137 -328 2261 92 7 0 chr15 68812792 68813095 -16882659 - AluSp SINE Alu -8 305 1 2571 120 95 19 chr15 68813095 68813289 -16882465 + MER4C LTR ERV1 137 386 -79 3235 161 72 45 chr15 68813289 68813997 -16881757 + LTR8A LTR ERV1 1 727 0 2571 120 95 19 chr15 68813997 68814084 -16881670 + MER4C LTR ERV1 386 465 0 426 148 0 0 chr15 68814084 68814145 -16881609 + LTR62 LTR ERVK 659 719 0 3546 123 36 29 chr15 68814183 68814307 -16881447 - MER39B LTR ERV1 -37 616 494 3397 103 28 92 chr15 68814307 68814340 -16881414 - MER4A LTR ERV1 -3 597 563 1511 121 9 0 chr15 68814340 68814564 -16881190 - AluSg/x SINE Alu -16 294 69 3397 103 28 92 chr15 68814564 68815168 -16880586 - MER4A LTR ERV1 -37 563 1 3546 123 36 29 chr15 68815168 68815655 -16880099 - MER39B LTR ERV1 -159 494 1 2789 134 39 14 chr15 68815659 68816172 -16879582 - MER4E LTR ERV1 0 766 73 1100 66 0 0 chr15 68816174 68816310 -16879444 - L1PA8 LINE L1 -501 5671 5536 3691 68 0 14 chr15 68816310 68816794 -16878960 + L1PA8 LINE L1 5689 6168 -4 2086 100 3 26 chr15 68816794 68817105 -16878649 + AluSc SINE Alu 1 304 -5 299 143 0 187 chr15 68817105 68817196 -16878558 - MER4D LTR ERV1 -798 74 1 1617 152 58 0 chr15 68817634 68817911 -16877843 - AluJb SINE Alu -19 293 1 2140 78 7 3 chr15 68818013 68818296 -16877458 + AluSg SINE Alu 1 284 -26 600 222 134 41 chr15 68818350 68818544 -16877210 - MIR SINE MIR -6 256 45 680 70 23 20 chr15 68818741 68818855 -16876899 - LTR12 LTR ERV1 0 714 368 283 189 0 0 chr15 68818855 68818908 -16876846 - LTR30 LTR ERV1 -118 604 552 437 103 0 29 chr15 68818939 68819007 -16876747 - LTR12 LTR ERV1 -440 274 209 250 269 0 0 chr15 68819027 68819079 -16876675 - LTR30 LTR ERV1 -670 52 1 1459 152 34 30 chr15 68819145 68819441 -16876313 - AluJo SINE Alu -15 297 1 1733 183 0 0 chr15 68819453 68819743 -16876011 - AluJb SINE Alu -22 290 1 2128 118 121 11 chr15 68819766 68820139 -16875615 + MER84 LTR ERVI 1 414 -93 1295 106 0 0 chr15 68820139 68820319 -16875435 - AluSp SINE Alu -3 310 131 712 110 30 0 chr15 68820319 68820419 -16875335 + MER84 LTR ERVI 405 507 0 928 168 59 165 chr15 68820481 68820839 -16874915 + LTR34 LTR ERV1 1 320 -379 589 226 86 27 chr15 68820830 68821016 -16874738 + LTR34 LTR ERV1 497 693 -6 * 342 269 116 60 chr15 68821047 68821109 -16874645 - MER34 LTR ERV1 -41 501 444 1770 156 23 0 chr15 68821109 68821410 -16874344 - AluJo SINE Alu -4 308 1 342 269 116 60 chr15 68821410 68821563 -16874191 - MER34 LTR ERV1 -98 444 274 * 1306 166 55 28 chr15 68821543 68821796 -16873958 + MER61A LTR ERV1 56 315 -28 321 175 18 0 chr15 68821825 68821882 -16873872 + LTR8A LTR ERV1 256 313 -414 806 143 0 53 chr15 68821883 68822016 -16873738 + FLAM_C SINE Alu 2 127 -6 1982 125 30 0 chr15 68822036 68822339 -16873415 + AluSx SINE Alu 1 312 0 1744 142 60 3 chr15 68822343 68822645 -16873109 + LTR8A LTR ERV1 298 616 -111 686 203 0 16 chr15 68824263 68824391 -16871363 + LTR8 LTR ERV1 566 691 0 441 238 0 49 chr15 68824391 68824509 -16871245 - MER34 LTR ERV1 -428 114 3 237 272 139 44 chr15 68825163 68825342 -16870412 - MIR3 SINE MIR -68 194 4 203 0 0 36 chr15 68826114 68826142 -16869612 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 970 145 26 0 chr15 68826297 68826449 -16869305 - AluJo SINE Alu -10 292 137 721 108 0 20 chr15 68826449 68826551 -16869203 + PABL_A LTR ERV1 11 110 -550 2968 203 39 11 chr15 68826557 68827178 -16868576 + LTR9B LTR ERV1 7 644 0 * 4406 69 9 11 chr15 68827178 68827732 -16868022 + PABL_A LTR ERV1 108 660 0 638 188 7 43 chr15 68827750 68827888 -16867866 - AluJo SINE Alu -169 133 1 2798 152 30 41 chr15 68827895 68828131 -16867623 - L1MB5 LINE L1 -36 6138 5901 1945 132 3 3 chr15 68828131 68828435 -16867319 + AluSc SINE Alu 1 304 -5 2798 152 30 41 chr15 68828435 68828757 -16866997 - L1MB5 LINE L1 -273 5901 5586 211 271 0 0 chr15 68828961 68829009 -16866745 - MIR SINE MIR -1 261 214 1771 173 0 0 chr15 68829080 68829394 -16866360 - AluJo SINE Alu 0 312 1 481 215 123 23 chr15 68829570 68829700 -16866054 + MIR SINE MIR 63 205 -57 990 232 134 35 chr15 68829700 68830119 -16865635 + MLT1D LTR MaLR 26 467 0 2326 91 3 0 chr15 68830663 68830970 -16864784 - AluSp SINE Alu -5 308 1 1760 162 0 0 chr15 68831534 68831812 -16863942 - AluJo SINE Alu -30 282 5 217 304 14 0 chr15 68831816 68831885 -16863869 - MIR SINE MIR -37 225 156 2909 131 12 74 chr15 68831888 68832173 -16863581 - MER7C DNA MER2_type -2429 599 365 1391 162 129 19 chr15 68832173 68832444 -16863310 + AluJo SINE Alu 1 301 -1 2909 131 12 74 chr15 68832444 68832724 -16863030 - MER7C DNA MER2_type -2663 365 69 1971 91 34 40 chr15 68832724 68832892 -16862862 - AluSp SINE Alu -18 295 128 2008 204 68 25 chr15 68832892 68833376 -16862378 + LTR22 LTR ERVK 1 505 -4 1971 91 34 40 chr15 68833376 68833504 -16862250 - AluSp SINE Alu -185 128 1 455 178 14 0 chr15 68833504 68833577 -16862177 - MER7C DNA MER2_type -525 77 4 1650 148 3 31 chr15 68833579 68833906 -16861848 - AluJb SINE Alu 0 319 1 482 191 127 96 chr15 68833935 68833976 -16861778 - MER69A DNA AcHobo -2350 176 138 1823 139 10 10 chr15 68833976 68834270 -16861484 + AluJo SINE Alu 1 294 -18 482 191 127 96 chr15 68834270 68834385 -16861369 - MER69A DNA AcHobo -2388 138 15 262 282 36 45 chr15 68834385 68834495 -16861259 - MIR SINE MIR -62 146 38 739 189 46 41 chr15 68834529 68834725 -16861029 - MIR SINE MIR -3 259 63 1671 179 0 19 chr15 68834961 68835279 -16860475 + AluJb SINE Alu 1 312 0 2047 106 3 0 chr15 68835286 68835610 -16860144 + AluSp SINE Alu 1 325 0 261 167 111 130 chr15 68835733 68835841 -16859913 + L1ME LINE L1 5707 5812 -350 1221 219 134 81 chr15 68835936 68836443 -16859311 - MLT1F1 LTR MaLR -8 559 1 3646 162 30 2 chr15 68836581 68837080 -16858674 + L1MA5 LINE L1 4808 5291 -1009 1666 148 32 7 chr15 68837080 68837364 -16858390 + AluJb SINE Alu 1 291 -21 3646 162 30 2 chr15 68837364 68837893 -16857861 + L1MA5 LINE L1 5291 5868 -432 277 217 116 0 chr15 68837894 68837963 -16857791 - LTR47A LTR ERVL -115 337 261 216 0 0 0 chr15 68837977 68838001 -16857753 + (TA)n Simple_repeat Simple_repeat 2 25 0 230 0 33 0 chr15 68838002 68838032 -16857722 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1607 155 33 11 chr15 68838034 68838305 -16857449 - AluJb SINE Alu -35 277 1 666 133 0 160 chr15 68838581 68838701 -16857053 + L1MA5 LINE L1 6005 6088 -212 2133 117 0 3 chr15 68838701 68839009 -16856745 - AluSc SINE Alu -2 307 1 666 133 0 160 chr15 68839009 68839069 -16856685 + L1MA5 LINE L1 6088 6156 -144 1904 133 30 44 chr15 68839070 68839142 -16856612 - MSTA LTR MaLR 0 428 356 2035 91 29 19 chr15 68839142 68839449 -16856305 - AluSg SINE Alu 0 310 1 1904 133 30 44 chr15 68839449 68839715 -16856039 - MSTA LTR MaLR -72 356 95 3240 114 10 37 chr15 68839716 68840257 -16855497 + MER51C LTR ERV1 1 506 -134 1787 144 3 41 chr15 68840257 68840576 -16855178 - AluSx SINE Alu -5 307 1 2117 141 24 21 chr15 68840576 68840916 -16854838 + THE1B LTR MaLR 24 364 0 467 90 0 0 chr15 68840922 68840989 -16854765 - Alu SINE Alu -8 301 235 1092 163 44 44 chr15 68840989 68841240 -16854514 + pTR5 LTR ERV1 743 993 -1445 3977 179 6 9 chr15 68841252 68842379 -16853375 + L1MA5A LINE L1 2173 3300 -3548 264 70 49 90 chr15 68842379 68842408 -16853346 - MSTA LTR MaLR -295 69 40 1724 159 40 7 chr15 68842408 68842710 -16853044 + AluSx SINE Alu 1 312 0 264 70 49 90 chr15 68842710 68842748 -16853006 - MSTA LTR MaLR -324 40 1 447 63 0 0 chr15 68843134 68843197 -16852557 + (CA)n Simple_repeat Simple_repeat 2 64 0 1796 169 0 6 chr15 68843211 68843524 -16852230 + AluSx SINE Alu 1 311 -1 3248 142 45 8 chr15 68843524 68844059 -16851695 + L1PA15 LINE L1 5611 6165 0 2233 93 0 3 chr15 68844064 68844364 -16851390 + AluY SINE Alu 1 299 -12 10553 144 29 66 chr15 68844371 68844424 -16851330 + L1MA5A LINE L1 3604 3657 -3342 1895 128 0 0 chr15 68844424 68844752 -16851002 + AluSx SINE Alu 1 328 0 10553 144 29 66 chr15 68844752 68844967 -16850787 + L1MA5A LINE L1 3657 3878 -3121 2122 112 3 3 chr15 68844967 68845270 -16850484 + AluSq SINE Alu 1 303 -10 10553 144 29 66 chr15 68845270 68845877 -16849877 + L1MA5A LINE L1 3878 4506 -2493 2161 121 3 0 chr15 68845877 68846184 -16849570 + AluSp SINE Alu 1 308 -5 10553 144 29 66 chr15 68846184 68846647 -16849107 + L1MA5A LINE L1 4506 4984 -2015 2123 105 10 0 chr15 68846647 68846951 -16848803 + AluSc SINE Alu 1 307 -2 10553 144 29 66 chr15 68846951 68847390 -16848364 + L1MA5A LINE L1 4984 5438 -1561 1860 156 130 21 chr15 68847390 68847774 -16847980 - MSTA LTR MaLR -2 426 1 10553 144 29 66 chr15 68847774 68847986 -16847768 + L1MA5A LINE L1 5438 5656 -1343 607 126 0 11 chr15 68847986 68848081 -16847673 + Alu SINE Alu 216 309 -2 10553 144 29 66 chr15 68848081 68848614 -16847140 + L1MA5A LINE L1 5656 6207 -792 2055 97 10 10 chr15 68848614 68848895 -16846859 + AluSp SINE Alu 1 281 -32 221 0 35 0 chr15 68848895 68848924 -16846830 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr15 68848924 68848949 -16846805 + (TA)n Simple_repeat Simple_repeat 1 25 0 10553 144 29 66 chr15 68848956 68849185 -16846569 + L1MA5A LINE L1 6207 6443 -556 1678 181 3 0 chr15 68849185 68849478 -16846276 + AluSx SINE Alu 1 294 -18 10553 144 29 66 chr15 68849478 68850157 -16845597 + L1MA5A LINE L1 6443 6996 -3 1172 121 103 45 chr15 68850158 68850381 -16845373 - Ricksha DNA DNA -771 2475 2240 207 100 0 0 chr15 68850381 68850411 -16845343 + (T)n Simple_repeat Simple_repeat 1 30 0 7324 132 7 48 chr15 68851815 68851933 -16843821 - Ricksha DNA DNA -993 2253 2132 1703 163 37 0 chr15 68851933 68852113 -16843641 - AluSx SINE Alu -7 305 108 315 0 0 0 chr15 68852113 68852148 -16843606 + (TG)n Simple_repeat Simple_repeat 1 35 0 1703 163 37 0 chr15 68852148 68852261 -16843493 - AluSx SINE Alu -204 108 1 7324 132 7 48 chr15 68852261 68852888 -16842866 - Ricksha DNA DNA -1114 2132 1480 2230 94 3 22 chr15 68852888 68853207 -16842547 + AluSp SINE Alu 1 313 0 7324 132 7 48 chr15 68853207 68853326 -16842428 - Ricksha DNA DNA -1766 1480 1358 1761 180 3 3 chr15 68853326 68853637 -16842117 + AluJo SINE Alu 1 311 -1 7324 132 7 48 chr15 68853637 68854010 -16841744 - Ricksha DNA DNA -1888 1358 1066 760 210 127 10 chr15 68854008 68854213 -16841541 - Ricksha DNA DNA -2885 361 133 * 257 263 126 11 chr15 68854690 68854785 -16840969 + MIR SINE MIR 33 138 -70 2121 127 137 13 chr15 68854856 68855235 -16840519 - MSTA LTR MaLR 0 428 3 23 0 0 0 chr15 68855380 68855403 -16840351 + AT_rich Low_complexity Low_complexity 1 23 0 764 155 0 16 chr15 68855412 68855541 -16840213 + FLAM_C SINE Alu 16 142 -1 1974 128 0 35 chr15 68855590 68855902 -16839852 + AluSq SINE Alu 1 301 -12 26 0 0 0 chr15 68855902 68855928 -16839826 + AT_rich Low_complexity Low_complexity 1 26 0 298 248 67 76 chr15 68855934 68856144 -16839610 - L1MC4a LINE L1 -1741 6067 5860 2215 86 10 3 chr15 68857669 68857971 -16837783 + AluSx SINE Alu 1 304 -8 1799 151 7 3 chr15 68858272 68858577 -16837177 + AluJb SINE Alu 1 306 -6 1988 172 59 61 chr15 68859091 68859224 -16836530 + LTR2B LTR ERV1 32 164 -326 2313 93 3 3 chr15 68859224 68859537 -16836217 + AluSp SINE Alu 1 313 0 1988 172 59 61 chr15 68859537 68859863 -16835891 + LTR2B LTR ERV1 164 490 0 3889 103 18 4 chr15 68860007 68860553 -16835201 - MER41A LTR ERV1 0 554 1 3440 150 39 31 chr15 68860778 68861167 -16834587 - MER39B LTR ERV1 0 653 256 1497 199 7 3 chr15 68861167 68861468 -16834286 - AluJb SINE Alu -10 302 1 3440 150 39 31 chr15 68861468 68861723 -16834031 - MER39B LTR ERV1 -397 256 4 2034 100 33 7 chr15 68862506 68862807 -16832947 + AluSc SINE Alu 1 309 0 474 241 101 46 chr15 68863208 68863483 -16832271 + LTR48 LTR ERV1 1 365 -411 557 198 6 142 chr15 68863566 68863649 -16832105 + Tigger3(Golem) DNA MER2_type 1 53 -2976 1659 139 14 17 chr15 68863649 68863936 -16831818 - AluJb SINE Alu -11 301 16 557 198 6 142 chr15 68863936 68864014 -16831740 + Tigger3(Golem) DNA MER2_type 53 140 -2889 * 1537 142 13 0 chr15 68864012 68864251 -16831503 + Tigger3(Golem) DNA MER2_type 2785 3026 -3 367 205 27 45 chr15 68864270 68864308 -16831446 + LTR48B LTR ERV1 487 524 -120 3127 139 41 82 chr15 68864308 68864562 -16831192 + MER39B LTR ERV1 1 264 -389 2250 98 0 3 chr15 68864562 68864867 -16830887 - AluSg SINE Alu -6 304 1 3127 139 41 82 chr15 68864867 68864890 -16830864 + MER39B LTR ERV1 264 286 -367 1479 112 0 5 chr15 68864890 68865096 -16830658 - AluSp SINE Alu -107 206 2 3127 139 41 82 chr15 68865096 68865498 -16830256 + MER39B LTR ERV1 286 653 0 367 205 27 45 chr15 68865498 68865571 -16830183 + LTR48B LTR ERV1 524 596 -48 256 135 0 0 chr15 68865819 68865856 -16829898 - MIR SINE MIR -10 252 216 554 145 6 2 chr15 68865984 68866174 -16829580 - MER2 DNA MER2_type 0 345 125 250 183 50 50 chr15 68866176 68866236 -16829518 + AluJ/FLAM SINE Alu 3 62 -240 * 252 143 54 54 chr15 68866233 68866289 -16829465 + AluJ/FLAM SINE Alu 28 83 -219 1634 174 3 14 chr15 68866297 68866584 -16829170 + AluJb SINE Alu 28 311 -1 3231 153 88 66 chr15 68866609 68866840 -16828914 - MER4-int LTR ERV1 -4215 2383 2159 2167 123 0 0 chr15 68866840 68867142 -16828612 - AluSp SINE Alu -11 302 1 3231 153 88 66 chr15 68867142 68867331 -16828423 - MER4-int LTR ERV1 -4439 2159 1976 2322 97 0 3 chr15 68867331 68867639 -16828115 - AluSp SINE Alu -6 307 1 3231 153 88 66 chr15 68867639 68868212 -16827542 - MER4-int LTR ERV1 -4622 1976 970 439 69 0 0 chr15 68868217 68868275 -16827479 + AluSp/q SINE Alu 189 246 -67 216 299 45 57 chr15 68868285 68868442 -16827312 + MIR SINE MIR 47 201 -61 219 339 71 44 chr15 68868548 68868731 -16827023 - L2 LINE L2 -277 2995 2808 7635 22 7 314 chr15 68868787 68870790 -16824964 + SVA Other Other 1 1386 0 1251 119 8 131 chr15 68870913 68871181 -16824573 + MER4B LTR ERV1 1 235 -375 1431 108 10 5 chr15 68871181 68871384 -16824370 + MER4B LTR ERV1 407 610 0 1269 170 41 65 chr15 68871386 68871930 -16823824 - MER4D-int LTR ERV1 -3661 2285 864 305 173 0 19 chr15 68871930 68871982 -16823772 - LTR49 LTR ERV1 -282 313 263 390 220 0 0 chr15 68872002 68872102 -16823652 + CT-rich Low_complexity Low_complexity 1 100 0 343 120 0 0 chr15 68872166 68872216 -16823538 - MER4D-int LTR ERV1 -5912 686 637 2344 127 13 46 chr15 68872217 68872612 -16823142 + MER48 LTR ERV1 6 387 0 1478 146 102 66 chr15 68872612 68872786 -16822968 - MER4D-int LTR ERV1 -5975 623 457 2280 63 0 13 chr15 68872786 68873086 -16822668 + AluY SINE Alu 1 296 -15 1478 146 102 66 chr15 68873086 68873322 -16822432 - MER4D-int LTR ERV1 -6141 457 198 1934 110 4 0 chr15 68873605 68873877 -16821877 - AluSg SINE Alu -37 273 1 860 180 143 11 chr15 68873877 68874066 -16821688 - MER4D-int LTR ERV1 -6384 214 1 334 49 0 0 chr15 68874069 68874110 -16821644 - MER4D LTR ERV1 0 872 832 527 108 0 0 chr15 68874111 68874185 -16821569 + MER4C LTR ERV1 392 465 0 1623 111 0 0 chr15 68874329 68874555 -16821199 - AluSc SINE Alu -83 226 1 345 248 107 44 chr15 68875407 68875613 -16820141 - MER34C LTR ERV1 -5 580 362 1731 162 28 0 chr15 68875805 68876089 -16819665 - AluJb SINE Alu -18 294 3 198 0 0 0 chr15 68876327 68876349 -16819405 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 5989 146 22 36 chr15 68876414 68877500 -16818254 + MER11C LTR ERVK 1 1071 0 2164 108 16 0 chr15 68877917 68878222 -16817532 + AluSx SINE Alu 1 310 -2 212 308 210 0 chr15 68879452 68879595 -16816159 - L3 LINE CR1 -91 1486 1314 1913 130 0 11 chr15 68879642 68879955 -16815799 - AluSx SINE Alu 0 310 1 901 301 57 9 chr15 68880056 68880391 -16815363 + L2 LINE L2 2400 2750 -564 1118 226 39 32 chr15 68880407 68880716 -16815038 - L1ME3A LINE L1 -5 6165 5855 189 0 0 0 chr15 68880755 68880776 -16814978 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 600 224 75 0 chr15 68880794 68880928 -16814826 + L1ME LINE L1 5556 5699 -471 584 221 47 16 chr15 68880944 68881071 -16814683 - MIR SINE MIR -86 176 46 1509 121 178 8 chr15 68881186 68881450 -16814304 - AluSg1 SINE Alu 0 309 1 5493 69 12 0 chr15 68881519 68882201 -16813553 - LTR8 LTR ERV1 0 691 2 19962 60 9 18 chr15 68882202 68883487 -16812267 - HUERS-P1 LTR ERV1 0 6263 4968 235 224 0 0 chr15 68883487 68883502 -16812252 + Alu SINE Alu 121 135 -168 2153 113 0 3 chr15 68883502 68883811 -16811943 + AluSg1 SINE Alu 1 308 -1 19962 60 9 18 chr15 68883536 68885223 -16810531 - HUERS-P1 LTR ERV1 -1295 4968 3578 2099 128 3 0 chr15 68885223 68885527 -16810227 - AluSp SINE Alu -4 309 5 19962 60 9 18 chr15 68885527 68885997 -16809757 - HUERS-P1 LTR ERV1 -2685 3578 3105 1405 126 130 28 chr15 68885997 68886152 -16809602 - AluSg SINE Alu -16 294 103 3749 93 24 8 chr15 68886152 68886655 -16809099 - MER9 LTR ERVK 0 511 1 1405 126 130 28 chr15 68886655 68886746 -16809008 - AluSg SINE Alu -207 103 23 19088 78 43 47 chr15 68886746 68887160 -16808594 - HUERS-P1 LTR ERV1 -3146 3117 2703 2039 96 46 0 chr15 68887160 68887440 -16808314 - AluSq SINE Alu -20 293 1 19088 78 43 47 chr15 68887440 68887824 -16807930 - HUERS-P1 LTR ERV1 -3560 2703 2319 226 0 29 29 chr15 68887824 68887859 -16807895 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 19088 78 43 47 chr15 68887859 68888752 -16807002 - HUERS-P1 LTR ERV1 -3944 2319 1424 2144 119 0 6 chr15 68888752 68889063 -16806691 - AluSg SINE Alu -1 309 1 19088 78 43 47 chr15 68889063 68890371 -16805383 - HUERS-P1 LTR ERV1 -4839 1424 128 4488 58 13 35 chr15 68890371 68890467 -16805287 - LTR8 LTR ERV1 -73 618 521 2029 105 0 48 chr15 68890467 68890781 -16804973 - AluSc SINE Alu -8 301 3 4488 58 13 35 chr15 68890781 68891316 -16804438 - LTR8 LTR ERV1 -170 521 1 1664 179 27 13 chr15 68891558 68891859 -16803895 - AluJb SINE Alu -7 305 1 2182 110 13 3 chr15 68891961 68892270 -16803484 + AluSx SINE Alu 1 312 0 703 233 25 0 chr15 68892486 68892649 -16803105 - MER5B DNA MER1_type 0 178 12 1467 172 22 41 chr15 68892888 68892945 -16802809 - L1MB7 LINE L1 -16 6168 6111 2161 109 0 0 chr15 68892945 68893239 -16802515 + AluSx SINE Alu 1 294 -18 1467 172 22 41 chr15 68893239 68893495 -16802259 - L1MB7 LINE L1 -73 6111 5861 351 149 0 26 chr15 68893517 68893589 -16802165 - Alu SINE Alu -256 46 2 3434 187 15 61 chr15 68893970 68894090 -16801664 - L1M4 LINE L1 -1382 4764 4640 2371 77 0 0 chr15 68894090 68894390 -16801364 - AluY SINE Alu -11 300 1 3434 187 15 61 chr15 68894390 68894603 -16801151 - L1M4 LINE L1 -1506 4640 4419 2283 99 0 0 chr15 68894603 68894907 -16800847 - AluSx SINE Alu -8 304 1 3434 187 15 61 chr15 68894907 68895093 -16800661 - L1M4 LINE L1 -1727 4419 4226 252 59 0 0 chr15 68895093 68895127 -16800627 + (TG)n Simple_repeat Simple_repeat 1 34 0 3434 187 15 61 chr15 68895127 68895139 -16800615 - L1M4 LINE L1 -1920 4226 4215 2360 73 13 0 chr15 68895139 68895440 -16800314 - AluSp SINE Alu -8 305 1 3434 187 15 61 chr15 68895440 68895677 -16800077 - L1M4 LINE L1 -1931 4215 3969 1181 105 0 6 chr15 68895677 68895858 -16799896 + (TA)n Simple_repeat Simple_repeat 1 180 0 1940 146 0 0 chr15 68895867 68896161 -16799593 - AluSx SINE Alu -14 298 5 3434 187 15 61 chr15 68896161 68896307 -16799447 - L1M4 LINE L1 -2185 3961 3879 2315 74 0 14 chr15 68896322 68896619 -16799135 - AluY SINE Alu -16 295 3 1664 147 34 17 chr15 68896765 68897057 -16798697 - AluJb SINE Alu -15 297 1 2096 89 4 0 chr15 68897063 68897387 -16798367 - AluSx SINE Alu 0 325 1 477 262 8 0 chr15 68897513 68897635 -16798119 + MER58B DNA MER1_type 202 324 -17 917 300 47 6 chr15 68897649 68897992 -16797762 - L1MB7 LINE L1 -2071 5737 5381 184 352 0 11 chr15 68898691 68898779 -16796975 + MIR3 SINE MIR 116 202 -6 2291 87 0 16 chr15 68899898 68900210 -16795544 - AluY SINE Alu -4 307 1 24 0 0 0 chr15 68900728 68900752 -16795002 + AT_rich Low_complexity Low_complexity 1 24 0 224 353 66 8 chr15 68900908 68901030 -16794724 + L2 LINE L2 2933 3061 -211 184 346 90 0 chr15 68905217 68905295 -16790459 - MIR SINE MIR -63 145 61 611 214 60 66 chr15 68905319 68905501 -16790253 + MER91B DNA MER1_type 10 190 0 558 217 26 0 chr15 68906214 68906329 -16789425 + L2 LINE L2 3196 3313 0 234 325 53 26 chr15 68906335 68906449 -16789305 - MIR SINE MIR -75 133 17 212 255 0 0 chr15 68907264 68907311 -16788443 + (TG)n Simple_repeat Simple_repeat 1 47 0 367 307 149 52 chr15 68907459 68907808 -16787946 - L2 LINE L2 -94 3219 2837 297 194 32 108 chr15 68907814 68907861 -16787893 + MER5A DNA MER1_type 26 64 -125 2108 82 0 20 chr15 68907861 68908182 -16787572 + AluSx SINE Alu 1 312 0 297 194 32 108 chr15 68908182 68908227 -16787527 + MER5A DNA MER1_type 64 111 -78 276 196 18 0 chr15 68908280 68908336 -16787418 - MIR SINE MIR -63 145 89 197 239 119 0 chr15 68909166 68909233 -16786521 + L2 LINE L2 3136 3210 -62 210 218 115 23 chr15 68909308 68909395 -16786359 + MIR SINE MIR 82 176 -86 217 366 11 0 chr15 68909536 68909629 -16786125 - L2 LINE L2 -189 3083 2990 771 176 0 0 chr15 68910302 68910694 -16785060 + (TG)n Simple_repeat Simple_repeat 1 392 0 182 326 58 23 chr15 68910922 68911008 -16784746 - MIR SINE MIR -63 145 57 2153 105 0 13 chr15 68911390 68911695 -16784059 - AluSx SINE Alu -11 301 1 194 194 0 0 chr15 68911695 68911731 -16784023 - MIR SINE MIR -113 149 114 2272 98 0 0 chr15 68913073 68913370 -16782384 - AluSc SINE Alu -12 297 1 228 67 0 0 chr15 68914915 68914945 -16780809 + (CA)n Simple_repeat Simple_repeat 2 31 0 189 229 0 82 chr15 68915277 68915338 -16780416 - L2 LINE L2 -3 3269 3214 2222 94 3 13 chr15 68915400 68915707 -16780047 - AluSq SINE Alu -9 304 1 277 246 50 80 chr15 68917339 68917498 -16778256 + MIR SINE MIR 20 170 -59 561 270 4 119 chr15 68917597 68917707 -16778047 - MIR SINE MIR -25 237 171 2198 111 0 0 chr15 68917707 68918005 -16777749 - AluSq SINE Alu -15 298 1 561 270 4 119 chr15 68918005 68918146 -16777608 - MIR SINE MIR -91 171 15 414 208 116 28 chr15 68918150 68918221 -16777533 - MIR SINE MIR -12 250 187 1915 128 3 10 chr15 68918221 68918517 -16777237 - AluSx SINE Alu -18 294 1 414 208 116 28 chr15 68918517 68918627 -16777127 - MIR SINE MIR -75 187 45 368 279 0 10 chr15 68918963 68919063 -16776691 - MIR SINE MIR -77 131 32 2134 125 3 0 chr15 68919164 68919475 -16776279 - AluSx SINE Alu 0 312 1 730 236 31 0 chr15 68919889 68920050 -16775704 + MIR SINE MIR 27 192 -70 2011 134 0 3 chr15 68920055 68920361 -16775393 + AluSx SINE Alu 3 307 -5 2191 98 3 10 chr15 68920471 68920777 -16774977 + AluSx SINE Alu 1 304 -8 522 267 60 33 chr15 68920780 68921131 -16774623 - MLT1J1 LTR MaLR -53 458 26 276 345 0 24 chr15 68921176 68921260 -16774494 - MIR SINE MIR -101 107 26 648 129 0 30 chr15 68921576 68921708 -16774046 + (TTCC)n Simple_repeat Simple_repeat 4 131 0 261 342 9 9 chr15 68921884 68921995 -16773759 + L2 LINE L2 2645 2755 -559 2093 125 0 0 chr15 68922015 68922312 -16773442 + AluSx SINE Alu 1 297 -15 326 307 66 0 chr15 68922390 68922527 -16773227 - LTR33 LTR ERVL -5 516 371 379 280 22 3 chr15 68922553 68922673 -16773081 - LTR33 LTR ERVL -311 210 68 376 192 15 123 chr15 68923029 68923159 -16772595 - MER96B DNA MER1_type? -6 411 296 681 109 0 0 chr15 68923260 68923352 -16772402 + AluY SINE Alu 1 92 -219 2337 100 3 0 chr15 68923554 68923865 -16771889 - AluSp SINE Alu -1 312 1 325 331 98 16 chr15 68923905 68924089 -16771665 + L2 LINE L2 3085 3283 -30 2270 100 0 0 chr15 68924704 68925004 -16770750 - AluSx SINE Alu -12 300 1 244 211 0 39 chr15 68925005 68925057 -16770697 + MIR SINE MIR 50 99 -163 238 354 52 0 chr15 68925067 68925163 -16770591 - MIR SINE MIR -6 256 156 2190 100 3 3 chr15 68925179 68925479 -16770275 - AluSq SINE Alu -13 300 1 355 235 78 9 chr15 68925545 68925660 -16770094 - MIR SINE MIR -80 182 60 1366 113 18 35 chr15 68925660 68925792 -16769962 + AluSx SINE Alu 1 129 -183 2155 106 3 13 chr15 68925792 68926104 -16769650 + AluSc SINE Alu 1 309 0 1366 113 18 35 chr15 68926104 68926200 -16769554 + AluSx SINE Alu 129 225 -87 1215 123 6 0 chr15 68926301 68926480 -16769274 + AluSg/x SINE Alu 121 300 -12 1553 205 138 42 chr15 68926672 68927130 -16768624 - MLT1D LTR MaLR -3 502 1 2278 60 0 0 chr15 68927170 68927473 -16768281 - AluY SINE Alu 0 303 1 373 277 88 48 chr15 68927598 68927664 -16768090 - L1ME4a LINE L1 -82 6039 5977 1879 142 24 7 chr15 68927664 68927960 -16767794 - AluSx SINE Alu -11 301 1 373 277 88 48 chr15 68927960 68928142 -16767612 - L1ME4a LINE L1 -144 5977 5781 486 283 185 0 chr15 68928237 68928438 -16767316 - MIR SINE MIR -11 251 17 525 176 111 0 chr15 68928490 68928598 -16767156 - MER5A DNA MER1_type -62 127 8 1720 184 3 7 chr15 68928730 68929034 -16766720 - AluJo SINE Alu -9 303 1 2064 207 66 31 chr15 68929415 68929932 -16765822 - MLT1H LTR MaLR -3 546 12 908 237 5 0 chr15 68930478 68930668 -16765086 - MIR SINE MIR -52 210 20 549 250 53 125 chr15 68930762 68930992 -16764762 - MER102b DNA MER1_type -1122 306 104 188 33 0 33 chr15 68930992 68931022 -16764732 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 549 250 53 125 chr15 68931022 68931111 -16764643 - MER102b DNA MER1_type -1324 104 10 189 291 97 29 chr15 68931202 68931305 -16764449 + MIR SINE MIR 37 146 -62 363 295 57 0 chr15 68932997 68933102 -16762652 - L2 LINE L2 -1 3271 3161 294 258 0 0 chr15 68933144 68933206 -16762548 + L2 LINE L2 3233 3294 -19 998 155 55 11 chr15 68934938 68935119 -16760635 + MER5A DNA MER1_type 1 189 0 200 240 0 20 chr15 68935139 68935189 -16760565 - L2 LINE L2 -6 3307 3259 2080 113 0 28 chr15 68935508 68935827 -16759927 - AluSg SINE Alu 0 310 1 25 0 0 0 chr15 68936416 68936441 -16759313 + AT_rich Low_complexity Low_complexity 1 25 0 210 319 53 18 chr15 68938552 68938665 -16757089 - MIR3 SINE MIR -14 194 78 910 223 21 5 chr15 68941156 68941349 -16754405 - MER63A DNA MER1_type -8 202 7 231 36 0 0 chr15 68943675 68943703 -16752051 + (CTG)n Simple_repeat Simple_repeat 3 30 0 203 0 0 36 chr15 68946314 68946342 -16749412 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 269 319 64 0 chr15 68946863 68946957 -16748797 + MER91C DNA MER1_type 41 140 0 25 0 0 0 chr15 68947166 68947191 -16748563 + AT_rich Low_complexity Low_complexity 1 25 0 1995 120 7 3 chr15 68947191 68947483 -16748271 + AluSg SINE Alu 1 293 -17 249 146 0 0 chr15 68947564 68947605 -16748149 - Alu SINE Alu -5 297 257 514 277 1 11 chr15 68947761 68947955 -16747799 + MER5B DNA MER1_type 7 171 -7 2260 116 0 0 chr15 68948269 68948580 -16747174 - AluSx SINE Alu -1 311 1 643 192 46 0 chr15 68948905 68949035 -16746719 + MER5B DNA MER1_type 1 136 -42 222 274 167 12 chr15 68949245 68949329 -16746425 + MIR SINE MIR 54 150 -112 243 222 19 37 chr15 68949742 68949850 -16745904 + (TA)n Simple_repeat Simple_repeat 1 106 0 201 74 0 0 chr15 68951202 68951229 -16744525 + (A)n Simple_repeat Simple_repeat 1 27 0 252 312 101 42 chr15 68951594 68951819 -16743935 - MIR SINE MIR -4 258 23 309 155 12 24 chr15 68956557 68956641 -16739113 + GA-rich Low_complexity Low_complexity 2 84 0 552 213 41 122 chr15 68956817 68957014 -16738740 + MER5A DNA MER1_type 4 184 -5 373 258 26 74 chr15 68957418 68957437 -16738317 - MER113 DNA MER1_type? -302 219 201 423 78 0 0 chr15 68957437 68957501 -16738253 + (TATG)n Simple_repeat Simple_repeat 2 65 0 373 258 26 74 chr15 68957501 68957583 -16738171 - MER113 DNA MER1_type? -320 201 117 2013 137 0 0 chr15 68957583 68957883 -16737871 - AluSx SINE Alu -12 300 1 373 258 26 74 chr15 68957883 68958009 -16737745 - MER113 DNA MER1_type? -404 117 2 700 182 28 0 chr15 68958496 68958639 -16737115 - MER103 DNA DNA -18 148 2 805 263 53 0 chr15 68959685 68959894 -16735860 - MIR SINE MIR -30 232 13 2095 122 0 13 chr15 68960277 68960581 -16735173 - AluSx SINE Alu -12 300 1 472 252 34 32 chr15 68961088 68961265 -16734489 - MIR SINE MIR 0 262 32 410 242 30 0 chr15 68961975 68962074 -16733680 + MER81 DNA DNA 4 105 -9 677 229 87 6 chr15 68962329 68962529 -16733225 - MIR SINE MIR -11 251 43 322 189 53 154 chr15 68962597 68962654 -16733100 + MER103 DNA DNA 1 62 -104 747 113 0 113 chr15 68962654 68962804 -16732950 - FLAM_C SINE Alu 0 133 1 322 189 53 154 chr15 68962804 68962915 -16732839 + MER103 DNA DNA 62 152 -14 450 205 12 0 chr15 68964338 68964421 -16731333 - MER58B DNA MER1_type 0 341 258 692 188 235 34 chr15 68964433 68964667 -16731087 + MER2 DNA MER2_type 30 310 -35 1062 256 31 8 chr15 68964685 68964939 -16730815 - MER58B DNA MER1_type -81 260 1 1963 117 7 4 chr15 68966566 68966870 -16728884 + AluSx SINE Alu 1 305 0 1140 175 18 18 chr15 68966888 68967116 -16728638 + AluJo SINE Alu 85 312 0 283 274 57 38 chr15 68967236 68967342 -16728412 - MIR SINE MIR -116 146 39 949 192 86 5 chr15 68969721 68969919 -16725835 - MER58A DNA MER1_type 0 224 11 638 254 20 51 chr15 68969936 68970079 -16725675 - MIR SINE MIR -71 191 54 2416 54 0 3 chr15 68970079 68970375 -16725379 - AluY SINE Alu -16 295 1 638 254 20 51 chr15 68970375 68970428 -16725326 - MIR SINE MIR -208 54 1 474 317 75 33 chr15 68971293 68971533 -16724221 - L3 LINE CR1 -7 1570 1321 337 254 95 48 chr15 68971847 68971973 -16723781 + MIR SINE MIR 64 195 -67 209 284 159 0 chr15 68971995 68972083 -16723671 - MIR SINE MIR -73 189 88 209 67 0 133 chr15 68973307 68973352 -16722402 + (A)n Simple_repeat Simple_repeat 1 39 0 1887 285 75 10 chr15 68973735 68974359 -16721395 - MER115 DNA AcHobo -19 674 10 1883 213 33 77 chr15 68975312 68975816 -16719938 + MLT2B1 LTR ERVL 1 481 -39 369 117 0 0 chr15 68975816 68975876 -16719878 + (TG)n Simple_repeat Simple_repeat 2 61 0 1883 213 33 77 chr15 68975876 68975915 -16719839 + MLT2B1 LTR ERVL 481 520 0 339 289 149 0 chr15 68976161 68976275 -16719479 - MER91B DNA MER1_type -8 182 52 229 150 25 0 chr15 68976348 68976388 -16719366 + MER5B DNA MER1_type 1 41 -137 * 299 240 53 0 chr15 68976383 68976458 -16719296 - MER5B DNA MER1_type -99 79 1 201 204 20 20 chr15 68978455 68978504 -16717250 + L3 LINE CR1 1490 1538 -39 1747 140 4 4 chr15 68978647 68978911 -16716843 - AluSx SINE Alu -48 264 1 472 308 92 40 chr15 68979080 68979428 -16716326 - L3 LINE CR1 -68 1509 1144 * 629 274 14 41 chr15 68979425 68979596 -16716158 - MIR3 SINE MIR -6 202 36 416 221 106 0 chr15 68979615 68979719 -16716035 + L2 LINE L2 3158 3272 0 457 319 0 0 chr15 68980029 68980142 -16715612 - MER63A DNA MER1_type 0 210 98 3114 131 12 125 chr15 68980243 68980921 -16714833 + MER7C DNA MER2_type 1 601 -1 227 286 157 28 chr15 68981838 68981978 -16713776 + MIR SINE MIR 32 184 -63 185 281 215 30 chr15 68982348 68982483 -16713271 + MIR3 SINE MIR 18 177 -31 467 263 34 46 chr15 68983304 68983479 -16712275 + MIR SINE MIR 20 192 -70 413 328 174 0 chr15 68984149 68984344 -16711410 - MIR SINE MIR -14 248 20 231 36 0 0 chr15 68984846 68984874 -16710880 + (A)n Simple_repeat Simple_repeat 1 28 0 980 276 120 18 chr15 68986035 68986338 -16709416 + L2 LINE L2 2763 3033 -280 1991 112 7 43 chr15 68986338 68986643 -16709111 - AluSx SINE Alu -18 294 1 980 276 120 18 chr15 68986643 68986830 -16708924 + L2 LINE L2 3033 3313 0 2349 72 13 0 chr15 68986891 68987197 -16708557 - AluY SINE Alu -1 310 1 1869 61 129 8 chr15 68988506 68988770 -16706984 + AluSx SINE Alu 1 296 -16 2915 181 48 4 chr15 68988926 68989452 -16706302 + MER77 LTR ERV1 54 602 -3 524 169 0 0 chr15 68989788 68989871 -16705883 + AluJ SINE Alu 27 109 -203 889 179 56 34 chr15 68989917 68990044 -16705710 + AluJ SINE Alu 108 242 -70 2845 104 3 0 chr15 68990044 68990418 -16705336 + THE1C LTR MaLR 1 375 0 889 179 56 34 chr15 68990418 68990469 -16705285 + AluJ SINE Alu 242 290 -22 712 327 24 5 chr15 68991122 68991333 -16704421 - MIR SINE MIR -33 229 15 25 0 0 0 chr15 68991441 68991466 -16704288 + AT_rich Low_complexity Low_complexity 1 25 0 1691 175 0 10 chr15 68991467 68991759 -16703995 - AluJo SINE Alu -23 289 1 193 176 0 0 chr15 68991785 68991819 -16703935 - L2 LINE L2 -4 3268 3235 880 135 14 7 chr15 68992302 68992450 -16703304 - L1MB3 LINE L1 -7 6176 6028 335 239 319 0 chr15 68993202 68993315 -16702439 + MIR SINE MIR 25 173 -89 2102 195 30 38 chr15 68993543 68994014 -16701740 + MLT1C LTR MaLR 1 467 0 222 37 0 0 chr15 68994155 68994182 -16701572 + (T)n Simple_repeat Simple_repeat 1 27 0 2033 138 0 0 chr15 68994264 68994562 -16701192 - AluSx SINE Alu -14 298 1 331 236 56 11 chr15 68995155 68995244 -16700510 + MER91C DNA MER1_type 16 108 -32 583 256 62 0 chr15 68995556 68995716 -16700038 - MIR SINE MIR -20 242 73 463 252 27 0 chr15 68996643 68996754 -16699000 - L2 LINE L2 0 3313 3200 315 286 173 38 chr15 68997021 68997339 -16698415 - L2 LINE L2 -101 3212 2852 367 270 13 66 chr15 68998967 68999119 -16696635 + MER5B DNA MER1_type 2 145 -33 272 336 28 9 chr15 68999717 68999824 -16695930 + MIR3 SINE MIR 97 205 -3 299 266 75 11 chr15 69000417 69000511 -16695243 - MIR SINE MIR -92 170 71 289 268 289 36 chr15 69000714 69000908 -16694846 - MIR SINE MIR 0 262 20 1148 146 8 92 chr15 69001066 69001305 -16694449 - MER20 DNA MER1_type 0 219 1 446 285 62 8 chr15 69001343 69001473 -16694281 + L2 LINE L2 3136 3272 0 256 292 25 83 chr15 69001502 69001622 -16694132 + MIR SINE MIR 34 146 -62 351 0 0 0 chr15 69002052 69002091 -16693663 + (CA)n Simple_repeat Simple_repeat 1 39 0 216 236 14 14 chr15 69002800 69002872 -16692882 + (TA)n Simple_repeat Simple_repeat 1 72 0 414 217 158 0 chr15 69002892 69003012 -16692742 + MER112 DNA MER1_type 79 217 -43 2003 115 14 3 chr15 69003191 69003486 -16692268 + AluSx SINE Alu 1 298 -14 448 306 46 1 chr15 69003650 69003824 -16691930 - MIR SINE MIR -60 148 20 291 280 0 0 chr15 69004124 69004199 -16691555 - MIR SINE MIR 0 262 188 286 206 16 0 chr15 69004229 69004292 -16691462 + L2 LINE L2 3208 3271 -1 273 204 23 23 chr15 69004835 69004923 -16690831 + (CA)n Simple_repeat Simple_repeat 1 88 0 180 0 0 0 chr15 69004979 69004999 -16690755 + (CA)n Simple_repeat Simple_repeat 1 20 0 587 175 7 0 chr15 69005039 69005193 -16690561 + (CA)n Simple_repeat Simple_repeat 1 155 0 211 288 25 38 chr15 69005277 69005357 -16690397 + MIR SINE MIR 86 164 -98 200 305 133 0 chr15 69005708 69005813 -16689941 + MIR SINE MIR 2 120 -142 2080 189 48 7 chr15 69006538 69006971 -16688783 + L1MB7 LINE L1 5734 6184 0 23 0 0 0 chr15 69009295 69009318 -16686436 + GC_rich Low_complexity Low_complexity 1 23 0 211 379 48 8 chr15 69009568 69009692 -16686062 + MIR SINE MIR 19 147 -61 1264 189 44 37 chr15 69010078 69010374 -16685380 + L1M4 LINE L1 3907 4204 -1942 2212 106 3 0 chr15 69010806 69011109 -16684645 + AluSc SINE Alu 1 304 -5 1810 130 0 0 chr15 69011588 69011849 -16683905 + AluSg SINE Alu 1 261 -49 707 90 0 0 chr15 69012021 69012121 -16683633 - AluSg/x SINE Alu -7 305 206 704 109 109 124 chr15 69012121 69012174 -16683580 + MER30 DNA MER1_type 32 84 -146 1950 124 7 7 chr15 69012174 69012473 -16683281 + AluSx SINE Alu 1 299 -13 704 109 109 124 chr15 69012473 69012621 -16683133 + MER30 DNA MER1_type 84 230 0 210 242 16 16 chr15 69012643 69012705 -16683049 + C-rich Low_complexity Low_complexity 4 65 0 303 28 0 0 chr15 69013063 69013099 -16682655 + (CA)n Simple_repeat Simple_repeat 2 37 0 1712 137 99 0 chr15 69013201 69013485 -16682269 - AluSx SINE Alu 0 312 1 1706 179 0 3 chr15 69013710 69014001 -16681753 - AluSx SINE Alu 0 312 23 2299 102 0 6 chr15 69014571 69014931 -16680823 + AluSq SINE Alu 1 358 0 1462 168 12 81 chr15 69015281 69015475 -16680279 - AluJo SINE Alu -2 310 147 2206 100 0 3 chr15 69015475 69015785 -16679969 + AluY SINE Alu 1 309 -2 1462 168 12 81 chr15 69015785 69015923 -16679831 - AluJo SINE Alu -165 147 1 209 308 29 10 chr15 69017150 69017254 -16678500 + MIR SINE MIR 31 136 -126 287 231 80 0 chr15 69017390 69017497 -16678257 - MIR SINE MIR -61 147 62 566 44 7 74 chr15 69017667 69017679 -16678075 + (GAA)n Simple_repeat Simple_repeat 3 14 -114 2153 107 10 3 chr15 69017679 69017989 -16677765 + AluSq SINE Alu 1 312 -1 566 44 7 74 chr15 69017989 69018111 -16677643 + (GAA)n Simple_repeat Simple_repeat 14 128 0 553 148 188 0 chr15 69020685 69020786 -16674968 + 5S rRNA rRNA 1 120 -1 31 0 0 0 chr15 69020794 69020825 -16674929 + AT_rich Low_complexity Low_complexity 1 31 0 2053 105 9 43 chr15 69020825 69021148 -16674606 + AluSx SINE Alu 1 312 0 1852 128 3 34 chr15 69021156 69021452 -16674302 + AluJb SINE Alu 1 287 -25 225 0 0 0 chr15 69021466 69021491 -16674263 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 681 167 7 43 chr15 69021496 69021634 -16674120 + FLAM_A SINE Alu 1 133 0 2663 176 25 9 chr15 69021853 69022366 -16673388 + L1MB4 LINE L1 5643 6166 -14 1798 108 0 0 chr15 69022366 69022607 -16673147 - AluSx SINE Alu -11 301 61 1802 143 14 7 chr15 69022663 69022957 -16672797 - AluJb SINE Alu -16 296 1 803 132 33 0 chr15 69023071 69023192 -16672562 - FLAM_C SINE Alu -18 125 1 2186 78 23 23 chr15 69023254 69023562 -16672192 + AluY SINE Alu 1 308 -3 610 232 0 17 chr15 69023828 69024005 -16671749 + G-rich Low_complexity Low_complexity 2 175 0 207 187 209 33 chr15 69025116 69025207 -16670547 + MIR SINE MIR 29 135 -127 197 211 19 19 chr15 69026582 69026634 -16669120 - MIR3 SINE MIR -24 184 133 261 252 196 9 chr15 69026668 69026775 -16668979 - L3 LINE CR1 -78 1499 1373 559 376 98 28 chr15 69026810 69027097 -16668657 - L3 LINE CR1 -321 1256 990 2158 102 7 7 chr15 69027097 69027400 -16668354 - AluSx SINE Alu -9 303 1 559 376 98 28 chr15 69027400 69027860 -16667894 - L3 LINE CR1 -587 990 457 312 91 0 0 chr15 69027938 69027982 -16667772 + (T)n Simple_repeat Simple_repeat 1 44 0 227 181 83 28 chr15 69028070 69028142 -16667612 - L3 LINE CR1 -1131 446 371 377 260 232 11 chr15 69028619 69028800 -16666954 - MIR SINE MIR -40 222 2 1987 123 7 0 chr15 69029341 69029633 -16666121 + AluSx SINE Alu 17 310 -2 2194 109 0 6 chr15 69029658 69029970 -16665784 + AluSq SINE Alu 1 310 -3 1796 161 3 0 chr15 69030607 69030898 -16664856 + AluJb SINE Alu 1 292 -20 1808 120 11 4 chr15 69030979 69031255 -16664499 - AluJo SINE Alu -9 303 26 258 136 0 0 chr15 69031347 69031391 -16664363 + (A)n Simple_repeat Simple_repeat 1 44 0 988 161 35 0 chr15 69031679 69031853 -16663901 + AluJo SINE Alu 118 297 -15 1777 113 35 0 chr15 69031859 69032115 -16663639 + AluSx SINE Alu 3 267 -45 284 24 0 48 chr15 69032125 69032167 -16663587 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 763 135 71 8 chr15 69032190 69032316 -16663438 + AluJb SINE Alu 1 134 -178 204 337 79 0 chr15 69032566 69032667 -16663087 + L2 LINE L2 2928 3036 -236 413 258 39 23 chr15 69032801 69032929 -16662825 - MIR SINE MIR -55 207 78 187 341 24 12 chr15 69032945 69033030 -16662724 + L2 LINE L2 3173 3258 -55 1969 152 7 0 chr15 69033051 69033361 -16662393 + AluSx SINE Alu 1 312 0 2189 88 7 0 chr15 69033409 69033741 -16662013 - AluSx SINE Alu 0 312 1 438 248 92 13 chr15 69033778 69033931 -16661823 - MIR SINE MIR -24 238 74 192 236 0 0 chr15 69035156 69035245 -16660509 + G-rich Low_complexity Low_complexity 1 89 0 858 268 61 4 chr15 69035971 69036217 -16659537 - MIR SINE MIR -1 261 2 285 188 0 0 chr15 69037485 69037524 -16658230 - MLT1B LTR MaLR 0 390 352 307 125 0 0 chr15 69037524 69037564 -16658190 + Alu SINE Alu 1 40 -263 1941 58 35 0 chr15 69037665 69037923 -16657831 - L1P LINE L1 -1124 5022 4756 918 77 0 0 chr15 69037923 69038053 -16657701 + L1P LINE L1 3257 3386 -2760 6924 51 6 0 chr15 69038053 69038915 -16656839 + L1P LINE L1 3687 4553 -1593 835 296 52 70 chr15 69039444 69039958 -16655796 - LTR33A LTR ERVL 0 523 19 180 0 0 0 chr15 69040266 69040286 -16655468 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 956 164 0 12 chr15 69040286 69040451 -16655303 - AluSg/x SINE Alu -32 280 118 234 184 0 0 chr15 69040457 69040506 -16655248 + L1MB7 LINE L1 6131 6179 -5 321 225 47 47 chr15 69040543 69040672 -16655082 + L1MC5 LINE L1 7807 7935 -26 192 244 122 49 chr15 69041196 69041278 -16654476 + MIR SINE MIR 59 146 -116 2048 96 0 34 chr15 69041595 69041919 -16653835 - AluSq SINE Alu 0 316 3 340 310 41 47 chr15 69041924 69042095 -16653659 - MIR SINE MIR -36 226 57 2083 131 0 3 chr15 69042157 69042471 -16653283 - AluSq SINE Alu 0 313 1 637 142 0 44 chr15 69042471 69042573 -16653181 - AluSg/x SINE Alu -9 303 205 921 105 0 0 chr15 69044030 69044163 -16651591 + AluSg/x SINE Alu 155 287 -23 881 147 94 18 chr15 69044163 69044381 -16651373 + L1M4 LINE L1 2802 3037 -3104 2067 119 0 22 chr15 69044381 69044700 -16651054 + AluSx SINE Alu 1 312 0 1714 167 23 7 chr15 69044728 69045027 -16650727 + AluSx SINE Alu 6 309 -3 1867 88 0 4 chr15 69045147 69045396 -16650358 - AluSq SINE Alu -59 254 7 198 0 0 0 chr15 69045401 69045423 -16650331 + (T)n Simple_repeat Simple_repeat 1 22 0 892 114 15 0 chr15 69045423 69045554 -16650200 - AluSq/x SINE Alu -180 133 1 25 0 0 0 chr15 69045881 69045906 -16649848 + AT_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr15 69046106 69046134 -16649620 + (T)n Simple_repeat Simple_repeat 1 28 0 3517 52 2 9 chr15 69046134 69046581 -16649173 - SVA Other Other -228 1158 715 1002 187 62 130 chr15 69046984 69047279 -16648475 + MER2 DNA MER2_type 1 268 -77 1479 173 8 4 chr15 69047279 69047539 -16648215 - AluJb SINE Alu -19 293 33 1002 187 62 130 chr15 69047539 69047612 -16648142 + MER2 DNA MER2_type 268 344 -1 1535 136 21 42 chr15 69047750 69048076 -16647678 + AluSg SINE Alu 1 320 0 2001 140 0 0 chr15 69048086 69048386 -16647368 + AluSx SINE Alu 1 300 -12 2375 81 0 0 chr15 69048488 69048798 -16646956 + AluY SINE Alu 1 310 -1 270 0 0 0 chr15 69048988 69049018 -16646736 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2169 114 0 3 chr15 69049070 69049378 -16646376 - AluSx SINE Alu -5 307 1 420 172 328 22 chr15 69049378 69049512 -16646242 - AluJo SINE Alu -12 290 116 22 0 0 0 chr15 69049566 69049588 -16646166 + AT_rich Low_complexity Low_complexity 1 22 0 1546 168 48 0 chr15 69049593 69049861 -16645893 + AluJo SINE Alu 7 287 -25 23 0 0 29 chr15 69049861 69049872 -16645882 + AT_rich Low_complexity Low_complexity 1 11 -22 2092 136 0 0 chr15 69049872 69050180 -16645574 + AluSx SINE Alu 1 308 -4 23 0 0 29 chr15 69050180 69050202 -16645552 + AT_rich Low_complexity Low_complexity 11 33 0 577 223 26 106 chr15 69050202 69050458 -16645296 + L1MC4a LINE L1 5676 5826 -336 629 268 63 76 chr15 69050467 69050486 -16645268 - L2 LINE L2 -3 3310 3292 2104 103 13 0 chr15 69050486 69050787 -16644967 + AluSq SINE Alu 1 305 -8 629 268 63 76 chr15 69050787 69051069 -16644685 - L2 LINE L2 -21 3292 3013 1369 146 28 8 chr15 69051296 69051549 -16644205 - AluSg SINE Alu -12 298 41 964 164 25 6 chr15 69051653 69051812 -16643942 + THE1B LTR MaLR 203 364 0 233 182 212 74 chr15 69052813 69053016 -16642738 + L1MC4a LINE L1 5949 6179 -1629 1043 184 58 11 chr15 69053024 69053301 -16642453 - L1M4 LINE L1 -2865 3281 2992 294 132 0 0 chr15 69053312 69053365 -16642389 + (TG)n Simple_repeat Simple_repeat 2 54 0 1801 153 30 0 chr15 69053390 69053690 -16642064 - AluJb SINE Alu -3 309 1 340 290 20 20 chr15 69053699 69053799 -16641955 - L1M4 LINE L1 -2647 3499 3400 833 187 179 28 chr15 69053969 69054220 -16641534 - L1MC4 LINE L1 -1304 6738 6450 235 246 0 15 chr15 69054644 69054709 -16641045 - L1M4 LINE L1 -1820 4326 4263 2097 112 0 16 chr15 69054712 69054888 -16640866 - AluSx SINE Alu -3 309 139 2100 115 0 3 chr15 69054888 69055193 -16640561 - AluSx SINE Alu -8 304 1 2097 112 0 16 chr15 69055193 69055328 -16640426 - AluSx SINE Alu -173 139 3 862 115 0 8 chr15 69055390 69055520 -16640234 - FLAM_C SINE Alu -12 131 3 2376 161 35 5 chr15 69055523 69055926 -16639828 - Tigger4(Zombi) DNA MER2_type -2312 419 5 1032 124 7 7 chr15 69055947 69056100 -16639654 + AluSq SINE Alu 1 153 -160 309 183 135 58 chr15 69056107 69056211 -16639543 + L2 LINE L2 3202 3313 0 2129 81 41 14 chr15 69056278 69056412 -16639342 + AluSg1 SINE Alu 1 130 -179 2398 51 0 3 chr15 69056412 69056707 -16639047 + AluY SINE Alu 1 294 -17 2129 81 41 14 chr15 69056707 69056867 -16638887 + AluSg1 SINE Alu 130 303 -6 347 148 0 0 chr15 69056868 69056922 -16638832 + Tigger4(Zombi) DNA MER2_type 410 463 -2268 1308 87 6 0 chr15 69056924 69057096 -16638658 + AluSq SINE Alu 1 173 -140 402 109 0 0 chr15 69057097 69057152 -16638602 + Tigger4(Zombi) DNA MER2_type 1320 1374 -1357 819 67 9 0 chr15 69057200 69057305 -16638449 + AluSq/x SINE Alu 24 129 -183 8658 113 43 15 chr15 69057322 69057850 -16637904 + Tigger4(Zombi) DNA MER2_type 1362 1874 -857 2122 108 0 3 chr15 69057850 69058147 -16637607 + AluSq SINE Alu 1 296 -17 8658 113 43 15 chr15 69058147 69058950 -16636804 + Tigger4(Zombi) DNA MER2_type 1874 2730 -1 1799 156 0 0 chr15 69058998 69059309 -16636445 - AluJb SINE Alu 0 311 1 485 205 0 0 chr15 69059433 69059516 -16636238 + L2 LINE L2 3229 3311 -2 1087 218 102 82 chr15 69059812 69060363 -16635391 + MER34B LTR ERV1 2 563 -2 577 186 54 23 chr15 69060718 69060847 -16634907 - FLAM_A SINE Alu 0 133 1 1976 123 7 0 chr15 69060850 69061151 -16634603 - AluSx SINE Alu -9 303 1 752 228 23 97 chr15 69061295 69061425 -16634329 - HAL1 LINE L1 -2 2505 2367 2158 123 0 0 chr15 69061425 69061735 -16634019 - AluSx SINE Alu -2 310 1 2098 82 7 7 chr15 69061737 69062031 -16633723 - AluSx SINE Alu -17 295 2 752 228 23 97 chr15 69062031 69062239 -16633515 - HAL1 LINE L1 -141 2366 2189 439 316 14 19 chr15 69062225 69062434 -16633320 + L1ME1 LINE L1 5737 5944 -222 * 1274 143 15 68 chr15 69062511 69062776 -16632978 + AluJo SINE Alu 61 311 -1 266 259 9 60 chr15 69063045 69063161 -16632593 - HAL1 LINE L1 -1193 1314 1205 1113 145 12 0 chr15 69063163 69063335 -16632419 - AluSg/x SINE Alu -5 307 134 2070 112 0 38 chr15 69063335 69063648 -16632106 - AluSx SINE Alu -11 301 1 541 141 85 68 chr15 69063653 69063830 -16631924 - HAL1 LINE L1 -1312 1195 1016 281 314 105 0 chr15 69063846 69063970 -16631784 - HAL1 LINE L1 -2277 230 94 1989 124 0 0 chr15 69064049 69064359 -16631395 + AluSx SINE Alu 1 310 0 242 210 41 54 chr15 69064584 69064660 -16631094 - MER5A DNA MER1_type -44 139 64 189 0 0 0 chr15 69064661 69064682 -16631072 + (TG)n Simple_repeat Simple_repeat 2 22 0 232 121 0 0 chr15 69064690 69064723 -16631031 - Alu SINE Alu -15 118 86 995 219 0 18 chr15 69064723 69064947 -16630807 - AluJo SINE Alu -92 220 1 260 251 106 149 chr15 69065440 69065695 -16630059 + L3 LINE CR1 1321 1564 -13 513 222 183 26 chr15 69065731 69065884 -16629870 + MER5A DNA MER1_type 10 186 -3 184 191 43 21 chr15 69066490 69066537 -16629217 - MIR SINE MIR -79 129 82 2004 125 0 16 chr15 69066911 69067222 -16628532 - AluJo SINE Alu -6 306 1 2277 87 3 0 chr15 69067272 69067570 -16628184 - AluSp SINE Alu -14 299 1 553 167 78 0 chr15 69067742 69067832 -16627922 + AluJo SINE Alu 2 98 -214 320 268 260 0 chr15 69068045 69068168 -16627586 - MIR SINE MIR -3 259 105 2196 62 6 52 chr15 69068272 69068597 -16627157 - AluSg SINE Alu 0 310 1 208 231 19 19 chr15 69068718 69068770 -16626984 + L2 LINE L2 3220 3271 -1 1054 147 51 15 chr15 69068932 69069129 -16626625 + AluJo SINE Alu 85 288 -24 2235 104 0 0 chr15 69069252 69069551 -16626203 - AluSg SINE Alu -11 299 1 2335 75 0 0 chr15 69069570 69069864 -16625890 - AluY SINE Alu -6 305 12 208 183 17 117 chr15 69069883 69069943 -16625811 - L2 LINE L2 -11 3261 3208 404 273 66 37 chr15 69070327 69070522 -16625232 + MIR3 SINE MIR 13 219 -43 828 246 70 76 chr15 69070780 69070844 -16624910 - L1MC4a LINE L1 -1962 5846 5783 1818 125 10 55 chr15 69070844 69071156 -16624598 + AluJb SINE Alu 5 302 -10 828 246 70 76 chr15 69071156 69071433 -16624321 - L1MC4a LINE L1 -2025 5783 5507 300 253 176 0 chr15 69071451 69071542 -16624212 - L1MC4a LINE L1 -2384 5424 5318 2266 93 7 0 chr15 69071558 69071860 -16623894 + AluSp SINE Alu 1 304 -9 337 267 64 59 chr15 69071871 69072107 -16623647 - L1MC4a LINE L1 -843 5303 5067 754 204 0 0 chr15 69072222 69072354 -16623400 - FLAM_A SINE Alu 0 133 2 350 236 135 11 chr15 69072548 69072637 -16623117 - MIR3 SINE MIR -21 187 88 294 345 104 50 chr15 69072712 69073069 -16622685 - L2 LINE L2 0 3272 2897 861 242 70 101 chr15 69073077 69073349 -16622405 + L1MEd LINE L1 425 673 -5446 1955 126 3 19 chr15 69073349 69073667 -16622087 + AluSq SINE Alu 1 313 0 861 242 70 101 chr15 69073667 69073948 -16621806 + L1MEd LINE L1 673 961 -5158 238 104 15 119 chr15 69073947 69074014 -16621740 + L1MC5 LINE L1 6898 6957 -1004 * 337 168 84 65 chr15 69073997 69074104 -16621650 + L1MEd LINE L1 926 1034 -5085 1520 96 100 0 chr15 69074181 69074401 -16621353 + AluY SINE Alu 1 242 -69 359 295 0 11 chr15 69074503 69074598 -16621156 - HsTC2 DNA Tc2 -1758 140 47 254 219 31 42 chr15 69074734 69074830 -16620924 - L1ME LINE L1 -399 5722 5628 1600 170 7 3 chr15 69074856 69075169 -16620585 - AluJb SINE Alu 0 314 1 456 86 0 0 chr15 69075220 69075290 -16620464 + (CA)n Simple_repeat Simple_repeat 1 70 0 430 326 133 4 chr15 69076599 69076832 -16618922 - MLT1L LTR MaLR -4 611 349 277 211 0 0 chr15 69076832 69076884 -16618870 + LTR30 LTR ERV1 1 52 -670 790 133 1 171 chr15 69076888 69077074 -16618680 + LTR12 LTR ERV1 100 248 -466 2105 95 0 39 chr15 69077456 69077761 -16617993 - AluSx SINE Alu -15 297 5 397 273 68 43 chr15 69077791 69077952 -16617802 - MIR SINE MIR -78 184 20 610 229 138 28 chr15 69078103 69078321 -16617433 - MIR SINE MIR -8 254 13 395 208 9 57 chr15 69078763 69078869 -16616885 - MLT1K LTR MaLR -6 582 482 296 322 74 20 chr15 69079074 69079223 -16616531 - MLT1K LTR MaLR -390 198 42 2034 78 68 7 chr15 69079227 69079520 -16616234 + AluSq SINE Alu 1 311 -2 548 165 9 0 chr15 69079544 69079659 -16616095 + GA-rich Low_complexity Low_complexity 1 116 0 8125 34 78 16 chr15 69079961 69081052 -16614702 + SVA Other Other 1 1158 -228 231 36 0 0 chr15 69081052 69081080 -16614674 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr15 69081280 69081305 -16614449 + AT_rich Low_complexity Low_complexity 1 25 0 227 258 34 0 chr15 69081784 69081873 -16613881 + L1MC4 LINE L1 6612 6703 -1339 1705 128 59 14 chr15 69081926 69082214 -16613540 + AluJo SINE Alu 1 301 -11 312 248 15 79 chr15 69083601 69083721 -16612033 - L1M4c LINE L1 -3904 2636 2539 1702 144 10 24 chr15 69083721 69084019 -16611735 - AluJb SINE Alu -18 294 1 312 248 15 79 chr15 69084019 69084101 -16611653 - L1M4c LINE L1 -4001 2539 2453 700 215 0 0 chr15 69084181 69084311 -16611443 - AluJo SINE Alu -17 295 166 2312 91 3 0 chr15 69084347 69084654 -16611100 - AluSx SINE Alu -4 308 1 964 140 34 6 chr15 69084655 69084833 -16610921 - AluJo SINE Alu -129 183 1 383 268 59 13 chr15 69085191 69085344 -16610410 - HAL1 LINE L1 -844 1663 1504 1116 127 0 0 chr15 69085349 69085507 -16610247 + AluSc SINE Alu 1 158 -151 1921 181 0 0 chr15 69085628 69085937 -16609817 + AluSx SINE Alu 1 309 -3 28 29 0 0 chr15 69085996 69086031 -16609723 + AT_rich Low_complexity Low_complexity 1 35 0 2319 85 0 0 chr15 69086042 69086325 -16609429 + AluY SINE Alu 1 327 0 258 68 23 0 chr15 69086325 69086369 -16609385 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2051 132 3 10 chr15 69086423 69086719 -16609035 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr15 69086797 69086827 -16608927 + AT_rich Low_complexity Low_complexity 1 30 0 853 210 89 50 chr15 69086908 69087074 -16608680 - AluJo SINE Alu -8 304 121 207 0 0 0 chr15 69087074 69087097 -16608657 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 853 210 89 50 chr15 69087097 69087211 -16608543 - AluJo SINE Alu -191 121 13 1934 128 3 24 chr15 69087216 69087531 -16608223 - AluSx SINE Alu 0 309 1 759 126 60 7 chr15 69087532 69087683 -16608071 - LTR23 LTR ERV1 -132 305 147 2353 89 36 0 chr15 69087911 69088213 -16607541 + AluSp SINE Alu 1 313 0 1875 149 17 3 chr15 69088357 69088652 -16607102 - AluJo SINE Alu -1 311 13 260 250 0 0 chr15 69089221 69089281 -16606473 - MER110-int LTR ERV1 -2170 2477 2418 1638 142 68 27 chr15 69089293 69089589 -16606165 - AluJb SINE Alu -4 308 1 790 175 0 8 chr15 69089755 69089881 -16605873 + FLAM_C SINE Alu 6 130 -13 1293 129 0 5 chr15 69089982 69090176 -16605578 - THE1B LTR MaLR -167 197 5 837 103 0 8 chr15 69090176 69090293 -16605461 + AluSg/x SINE Alu 133 248 -64 1342 91 0 0 chr15 69090293 69090458 -16605296 - AluSc SINE Alu -142 167 3 659 258 135 0 chr15 69090678 69090922 -16604832 + L1ME4a LINE L1 5416 5692 -478 2240 133 0 13 chr15 69090922 69091238 -16604516 + AluJb SINE Alu 1 312 0 546 195 30 55 chr15 69091256 69091420 -16604334 + L1ME3A LINE L1 6011 6170 0 483 305 54 11 chr15 69091420 69091699 -16604055 + L1ME4a LINE L1 5830 6120 -1 285 335 22 51 chr15 69091706 69092022 -16603732 + L1M4 LINE L1 4769 5075 -1071 352 297 71 26 chr15 69092082 69092237 -16603517 + L1M4 LINE L1 4350 4511 -1635 1860 173 0 3 chr15 69092898 69093205 -16602549 + AluJo SINE Alu 1 306 -6 226 254 90 45 chr15 69093208 69093275 -16602479 + MIR SINE MIR 21 90 -172 802 191 0 58 chr15 69093275 69093448 -16602306 - FAM SINE Alu -1 48 1 288 251 135 104 chr15 69093459 69093622 -16602132 + MIR SINE MIR 94 261 -1 324 0 0 0 chr15 69093724 69093760 -16601994 + (TG)n Simple_repeat Simple_repeat 1 36 0 312 114 0 152 chr15 69093760 69093839 -16601915 - AluSg/x SINE Alu -23 279 213 207 133 0 44 chr15 69095217 69095262 -16600492 + (TTCCC)n Simple_repeat Simple_repeat 1 43 0 261 303 131 0 chr15 69095750 69095872 -16599882 - MIR SINE MIR -6 256 119 2090 124 0 3 chr15 69096007 69096316 -16599438 - AluSg SINE Alu 0 308 1 342 200 15 7 chr15 69097096 69097178 -16598576 - MLT1A1 LTR MaLR -1 364 293 801 184 80 31 chr15 69097194 69097357 -16598397 - FAM SINE Alu 0 175 5 765 181 14 0 chr15 69097362 69097506 -16598248 - MLT1A1 LTR MaLR -55 310 165 391 278 213 19 chr15 69097711 69097927 -16597827 - MIR SINE MIR 0 262 5 323 349 137 40 chr15 69098053 69098454 -16597300 + L2 LINE L2 2830 3269 -3 184 57 29 29 chr15 69098975 69099010 -16596744 + (GGGAA)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr15 69099919 69099952 -16595802 + GC_rich Low_complexity Low_complexity 1 33 0 207 204 0 0 chr15 69100048 69100092 -16595662 + GA-rich Low_complexity Low_complexity 2 45 0 217 264 19 0 chr15 69100148 69100201 -16595553 + GA-rich Low_complexity Low_complexity 3 56 0 225 210 0 0 chr15 69100454 69100516 -16595238 + GA-rich Low_complexity Low_complexity 2 63 0 21 57 0 0 chr15 69100542 69100577 -16595177 + GC_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr15 69100612 69100636 -16595118 + (CCCGG)n Simple_repeat Simple_repeat 2 25 0 219 36 0 0 chr15 69100692 69100720 -16595034 + (CCCCAG)n Simple_repeat Simple_repeat 1 28 0 46 86 0 0 chr15 69100723 69100839 -16594915 + GC_rich Low_complexity Low_complexity 1 116 0 233 247 0 39 chr15 69100893 69100970 -16594784 + GA-rich Low_complexity Low_complexity 2 75 0 1563 162 52 22 chr15 69101443 69101715 -16594039 + AluJo SINE Alu 12 291 -21 959 131 92 79 chr15 69101718 69101904 -16593850 + L1MA8 LINE L1 5580 5771 -529 2274 131 0 3 chr15 69101904 69102217 -16593537 + AluSx SINE Alu 1 312 0 959 131 92 79 chr15 69102217 69102259 -16593495 + L1MA8 LINE L1 5771 5811 -489 1994 165 0 3 chr15 69102259 69102659 -16593095 - AluJb SINE Alu 0 402 4 280 98 0 0 chr15 69102659 69102700 -16593054 + L1MA8 LINE L1 5806 5846 -445 2653 112 62 0 chr15 69102748 69103167 -16592587 + L1MA8 LINE L1 5847 6291 0 792 139 0 9 chr15 69103252 69103367 -16592387 + FLAM_A SINE Alu 8 121 -21 325 276 17 82 chr15 69103385 69103507 -16592247 + HAL1 LINE L1 1446 1574 -933 2067 120 0 0 chr15 69103507 69103782 -16591972 - AluSq SINE Alu 0 313 39 325 276 17 82 chr15 69103782 69103881 -16591873 + HAL1 LINE L1 1574 1646 -861 2536 63 3 0 chr15 69103881 69104182 -16591572 - AluSp SINE Alu -11 302 1 325 276 17 82 chr15 69104182 69104252 -16591502 + HAL1 LINE L1 1646 1719 -788 1011 215 161 75 chr15 69104265 69104702 -16591052 + MLT1E LTR MaLR 1 535 -58 1931 165 0 13 chr15 69104702 69105018 -16590736 - AluJb SINE Alu 0 312 1 1011 215 161 75 chr15 69105018 69105050 -16590704 + MLT1E LTR MaLR 535 563 -30 2329 111 0 0 chr15 69105050 69105356 -16590398 - AluSg SINE Alu -4 306 1 531 244 85 49 chr15 69105479 69105520 -16590234 - MERVL LTR ERVL -3111 1885 1847 2134 127 3 13 chr15 69105520 69105828 -16589926 - AluSx SINE Alu -6 306 2 531 244 85 49 chr15 69105828 69105992 -16589762 - MERVL LTR ERVL -3149 1847 1687 2172 130 3 0 chr15 69105992 69106293 -16589461 - AluSx SINE Alu -10 302 1 296 333 18 9 chr15 69106379 69106493 -16589261 - MERVL LTR ERVL -4157 1607 1493 340 240 24 5 chr15 69106601 69106721 -16589033 - MERVL LTR ERVL -3785 1211 1091 1348 190 93 11 chr15 69106974 69107243 -16588511 - AluJo SINE Alu -21 291 1 1126 239 17 56 chr15 69107335 69107609 -16588145 - L1ME3A LINE L1 -208 5962 5679 2476 97 0 0 chr15 69107609 69107918 -16587836 - AluSc SINE Alu 0 309 1 1764 117 0 16 chr15 69107926 69108182 -16587572 - AluSx SINE Alu -6 306 55 1417 211 39 4 chr15 69108185 69108465 -16587289 - AluJb SINE Alu -22 290 1 1126 239 17 56 chr15 69108465 69108587 -16587167 - L1ME3A LINE L1 -500 5670 5569 253 91 0 91 chr15 69108587 69108631 -16587123 + LTR8 LTR ERV1 548 587 -104 906 223 0 23 chr15 69108793 69108968 -16586786 - AluJo SINE Alu -10 302 132 189 0 0 0 chr15 69109051 69109072 -16586682 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 699 208 8 0 chr15 69109072 69109192 -16586562 - AluJo SINE Alu -190 122 2 1597 103 14 31 chr15 69109550 69109773 -16585981 + AluSx SINE Alu 1 219 -93 854 126 0 0 chr15 69109773 69109892 -16585862 + AluSg/x SINE Alu 186 304 -6 1132 206 57 19 chr15 69110065 69110327 -16585427 - MER69 DNA AcHobo -1580 946 675 658 172 83 0 chr15 69110484 69110629 -16585125 + L1MA10 LINE L1 6163 6319 -15 21 0 0 0 chr15 69110677 69110698 -16585056 + AT_rich Low_complexity Low_complexity 1 21 0 983 199 0 0 chr15 69110715 69110955 -16584799 + FRAM SINE Alu 1 240 0 866 223 56 96 chr15 69110978 69111024 -16584730 - L1ME4a LINE L1 -69 6052 6006 2338 112 0 3 chr15 69111024 69111327 -16584427 - AluSx SINE Alu -10 302 1 866 223 56 96 chr15 69111327 69111813 -16583941 - L1ME4a LINE L1 -115 6006 5541 2152 109 6 31 chr15 69112185 69112505 -16583249 - AluSx SINE Alu 0 312 1 193 264 0 19 chr15 69113266 69113319 -16582435 - MIR SINE MIR -60 202 151 387 230 90 0 chr15 69113481 69113581 -16582173 + MIR SINE MIR 58 166 -96 281 212 84 32 chr15 69113616 69113747 -16582007 + L1ME LINE L1 5685 5822 -299 1793 161 3 27 chr15 69113754 69114053 -16581701 + AluJo SINE Alu 1 292 -20 2213 116 0 10 chr15 69114347 69114650 -16581104 + AluSx SINE Alu 1 300 -12 846 164 17 4 chr15 69114990 69115222 -16580532 + GA-rich Low_complexity Low_complexity 1 235 0 1894 164 10 6 chr15 69115223 69115534 -16580220 + AluJb SINE Alu 1 312 0 753 185 0 44 chr15 69115537 69115672 -16580082 + FLAM_C SINE Alu 2 130 -3 900 205 15 4 chr15 69115711 69115974 -16579780 + L1M3 LINE L1 3028 3293 -2853 1413 135 127 12 chr15 69115974 69116247 -16579507 + AluJo SINE Alu 13 313 0 1861 188 42 48 chr15 69116259 69116632 -16579122 + L1M3 LINE L1 4905 5279 -889 1750 112 112 4 chr15 69116632 69116899 -16578855 + AluSg SINE Alu 1 296 -14 2228 98 0 3 chr15 69116900 69117215 -16578539 + AluSx SINE Alu 1 314 0 1861 188 42 48 chr15 69117215 69117373 -16578381 + L1M3 LINE L1 5278 5442 -726 2346 100 0 3 chr15 69117373 69117672 -16578082 + AluSq SINE Alu 1 298 -15 183 158 53 0 chr15 69117796 69117834 -16577920 + MER5B DNA MER1_type 137 176 -2 360 217 94 80 chr15 69117971 69118109 -16577645 - MIR SINE MIR -4 258 119 194 389 49 6 chr15 69118154 69118316 -16577438 - L2 LINE L2 -469 2845 2677 1764 128 0 8 chr15 69118868 69119117 -16576637 - AluSx SINE Alu -22 290 44 832 172 0 0 chr15 69119273 69119401 -16576353 + FLAM_C SINE Alu 4 131 -2 369 224 193 44 chr15 69119883 69120103 -16575651 - MIR SINE MIR 0 262 3 872 143 8 0 chr15 69120255 69120381 -16575373 + FLAM_C SINE Alu 1 127 -6 56 16 0 0 chr15 69120381 69120444 -16575310 + AT_rich Low_complexity Low_complexity 1 63 0 207 0 0 0 chr15 69120540 69120563 -16575191 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 218 341 88 0 chr15 69120739 69120830 -16574924 - MIR SINE MIR -73 135 37 398 186 124 0 chr15 69121006 69121103 -16574651 - L1MA9 LINE L1 -22 6290 6182 854 129 71 71 chr15 69121107 69121225 -16574529 - L1MA9 LINE L1 -231 6081 5961 2144 108 28 0 chr15 69121225 69121512 -16574242 - AluSx SINE Alu -17 295 1 854 129 71 71 chr15 69121512 69121618 -16574136 - L1MA9 LINE L1 -350 5962 5857 22 56 0 0 chr15 69121955 69121991 -16573763 + GC_rich Low_complexity Low_complexity 1 36 0 390 229 250 14 chr15 69122755 69122895 -16572859 + MIR SINE MIR 22 194 -68 372 22 0 0 chr15 69123241 69123286 -16572468 + (CA)n Simple_repeat Simple_repeat 2 46 0 643 161 11 46 chr15 69123286 69123418 -16572336 + ORSL DNA AcHobo 13 139 -136 2153 111 14 0 chr15 69123418 69123715 -16572039 - AluSx SINE Alu -11 301 1 643 161 11 46 chr15 69123715 69123756 -16571998 + ORSL DNA AcHobo 139 180 -95 838 111 0 0 chr15 69123798 69123906 -16571848 + FLAM_A SINE Alu 18 125 -17 266 100 40 0 chr15 69123925 69123975 -16571779 + ORSL DNA AcHobo 181 232 -43 828 166 80 37 chr15 69124210 69124397 -16571357 - MER3 DNA MER1_type -14 195 1 2040 104 72 0 chr15 69124824 69125102 -16570652 - AluSx SINE Alu -14 298 1 2266 122 10 0 chr15 69125199 69125502 -16570252 - AluSx SINE Alu -6 306 1 1458 137 0 0 chr15 69125623 69125828 -16569926 - AluSx SINE Alu -9 301 97 2774 101 0 8 chr15 69125828 69126206 -16569548 + THE1C LTR MaLR 1 375 0 766 119 0 0 chr15 69126207 69126308 -16569446 - AluSx SINE Alu -211 102 2 194 216 0 0 chr15 69126323 69126360 -16569394 - MIR SINE MIR -2 260 224 1494 91 11 159 chr15 69126810 69127081 -16568673 + LTR23 LTR ERV1 1 210 -227 2163 129 0 3 chr15 69127081 69127384 -16568370 - AluSx SINE Alu -1 311 10 1494 91 11 159 chr15 69127384 69127463 -16568291 + LTR23 LTR ERV1 210 299 -138 839 148 14 0 chr15 69127522 69127664 -16568090 + LTR23 LTR ERV1 293 436 -1 2160 115 3 0 chr15 69128076 69128372 -16567382 - AluSx SINE Alu -15 297 1 1331 127 49 122 chr15 69128372 69128641 -16567113 + LTR23-int LTR ERV1 2700 2934 -3397 1328 185 99 34 chr15 69128641 69128933 -16566821 - AluJo SINE Alu -1 311 1 1331 127 49 122 chr15 69128933 69129049 -16566705 + LTR23-int LTR ERV1 2934 3057 -3274 997 163 7 0 chr15 69129049 69129343 -16566411 - FRAM SINE Alu 0 293 1 929 157 17 72 chr15 69129343 69129579 -16566175 + LTR23-int LTR ERV1 3050 3272 -3059 400 264 0 0 chr15 69129630 69129717 -16566037 + LTR23-int LTR ERV1 3264 3350 -2981 476 216 88 0 chr15 69129764 69129866 -16565888 + LTR23-int LTR ERV1 3354 3464 -2867 496 195 61 46 chr15 69129967 69130083 -16565671 + LTR23-int LTR ERV1 1742 1855 -3210 1978 169 7 0 chr15 69130083 69130390 -16565364 - AluJb SINE Alu -1 311 3 496 195 61 46 chr15 69130390 69130589 -16565165 + LTR23-int LTR ERV1 1855 2106 -2959 349 182 20 0 chr15 69130698 69130797 -16564957 + GA-rich Low_complexity Low_complexity 1 101 0 189 0 0 0 chr15 69130819 69130840 -16564914 + (CGG)n Simple_repeat Simple_repeat 3 23 0 2211 76 0 7 chr15 69131678 69131953 -16563801 - AluSg SINE Alu -16 294 22 184 203 153 0 chr15 69133263 69133322 -16562432 + L2 LINE L2 3205 3272 0 289 275 228 20 chr15 69133375 69133524 -16562230 - MIR3 SINE MIR -21 187 8 441 250 80 0 chr15 69133921 69134033 -16561721 + L2 LINE L2 3190 3310 -3 2512 65 0 13 chr15 69134240 69134548 -16561206 - AluSc SINE Alu -5 304 1 298 291 301 10 chr15 69134588 69134784 -16560970 - MIR SINE MIR 0 262 10 272 296 98 45 chr15 69135270 69135490 -16560264 - L2 LINE L2 -91 3222 2982 388 246 24 0 chr15 69135519 69135615 -16560139 + MER5A DNA MER1_type 4 102 -87 204 345 17 78 chr15 69135648 69135764 -16559990 + MIR SINE MIR 23 131 -77 387 238 0 26 chr15 69136376 69136523 -16559231 - MIR SINE MIR -15 247 29 2230 122 7 3 chr15 69137397 69137701 -16558053 - AluSx SINE Alu -7 305 1 253 327 193 25 chr15 69137856 69138287 -16557467 + L2 LINE L2 2437 2939 -375 461 198 10 10 chr15 69138616 69138717 -16557037 + MIR SINE MIR 42 142 -120 315 252 212 13 chr15 69138718 69138869 -16556885 + MIR SINE MIR 6 186 -76 795 117 0 8 chr15 69139713 69139833 -16555921 + FLAM_C SINE Alu 1 119 -14 2163 112 3 0 chr15 69140443 69140750 -16555004 + AluSp SINE Alu 1 308 0 1575 141 0 9 chr15 69140824 69141051 -16554703 + AluJo SINE Alu 87 311 -1 313 247 241 0 chr15 69142480 69142642 -16553112 + MIR SINE MIR 33 233 -29 466 211 53 0 chr15 69142668 69142763 -16552991 - MIR SINE MIR -110 152 53 198 309 36 56 chr15 69143217 69143341 -16552413 + L2 LINE L2 1335 1453 -1861 2377 111 0 0 chr15 69143341 69143638 -16552116 - AluSx SINE Alu -15 297 1 198 309 36 56 chr15 69143638 69143762 -16551992 + L2 LINE L2 1453 1578 -1736 204 330 156 28 chr15 69143770 69144551 -16551203 + L2 LINE L2 1802 2682 -632 1686 185 31 89 chr15 69144877 69144961 -16550793 + HsTC2 DNA Tc2 1234 1321 -577 2473 79 0 7 chr15 69144961 69145266 -16550488 + AluSx SINE Alu 1 303 -9 1686 185 31 89 chr15 69145266 69145700 -16550054 + HsTC2 DNA Tc2 1321 1898 0 2302 101 27 0 chr15 69146047 69146345 -16549409 + AluSx SINE Alu 1 306 -6 424 269 54 81 chr15 69146971 69147157 -16548597 + L1ME4a LINE L1 5712 5892 -229 27 29 0 0 chr15 69147159 69147193 -16548561 + AT_rich Low_complexity Low_complexity 1 34 0 2117 127 0 19 chr15 69147199 69147514 -16548240 - AluJb SINE Alu -3 309 1 468 163 0 12 chr15 69147514 69147600 -16548154 - AluJo SINE Alu -171 141 57 245 263 0 13 chr15 69147616 69147692 -16548062 + L1MC4 LINE L1 7524 7598 -444 3861 113 52 75 chr15 69147955 69148692 -16547062 + Tigger2 DNA MER2_type 1999 2718 0 772 196 0 0 chr15 69148708 69148841 -16546913 - FLAM_C SINE Alu 0 133 1 2245 125 0 3 chr15 69148851 69149155 -16546599 - AluSx SINE Alu -9 303 1 3344 147 17 15 chr15 69149156 69149748 -16546006 - L1MB3 LINE L1 -85 6098 5506 2621 60 3 0 chr15 69150129 69150431 -16545323 - AluSp SINE Alu -10 303 1 480 59 15 0 chr15 69150483 69150551 -16545203 - MER41B LTR ERV1 -88 547 479 2380 103 3 0 chr15 69150890 69151191 -16544563 - AluSx SINE Alu -10 302 1 1951 131 0 0 chr15 69152034 69152294 -16543460 + AluSq SINE Alu 1 260 -53 1669 135 8 8 chr15 69152294 69152538 -16543216 + AluJb SINE Alu 44 287 -25 2225 112 3 0 chr15 69152549 69152843 -16542911 + AluSx SINE Alu 1 295 -17 925 163 0 86 chr15 69152858 69153049 -16542705 + AluJo SINE Alu 120 326 14 451 146 31 0 chr15 69153049 69153145 -16542609 + L1MB3 LINE L1 6085 6183 0 2378 86 0 19 chr15 69153154 69153469 -16542285 + AluY SINE Alu 1 309 -2 25 31 0 0 chr15 69153632 69153664 -16542090 + AT_rich Low_complexity Low_complexity 1 32 0 661 195 43 30 chr15 69153761 69153925 -16541829 - AluJo SINE Alu 0 302 137 2168 130 0 23 chr15 69153957 69154264 -16541490 - AluSx SINE Alu -12 300 1 706 167 23 38 chr15 69154384 69154516 -16541238 - AluJo SINE Alu -170 132 3 680 312 66 38 chr15 69154571 69155068 -16540686 - L1ME4a LINE L1 -224 5897 5387 2399 107 3 0 chr15 69155423 69155732 -16540022 + AluSx SINE Alu 1 310 -2 379 121 0 0 chr15 69157282 69157340 -16538414 - AluS SINE Alu -242 58 1 2382 106 3 0 chr15 69157412 69157715 -16538039 + AluSp SINE Alu 1 304 -9 2503 80 0 0 chr15 69157787 69158089 -16537665 + AluSc SINE Alu 3 304 -5 320 316 89 38 chr15 69158090 69158561 -16537193 - HAL1b LINE L1 -846 502 8 196 229 82 33 chr15 69159666 69159727 -16536027 - L2 LINE L2 -19 3294 3231 273 286 135 75 chr15 69159935 69159968 -16535786 + MIR SINE MIR 116 146 -116 2081 110 11 4 chr15 69159968 69160275 -16535479 + AluSx SINE Alu 1 309 0 273 286 135 75 chr15 69160275 69160373 -16535381 + MIR SINE MIR 146 256 -6 2883 150 15 79 chr15 69160450 69161105 -16534649 - L1MB3 LINE L1 0 6183 5571 747 191 165 0 chr15 69161549 69161737 -16534017 + MER20 DNA MER1_type 1 219 0 473 296 190 28 chr15 69162541 69162757 -16532997 - MIR SINE MIR 0 262 12 296 272 87 10 chr15 69164399 69164502 -16531252 - L2 LINE L2 -16 3256 3146 2209 98 0 0 chr15 69164647 69164944 -16530810 - AluSx SINE Alu 0 301 5 222 105 0 0 chr15 69164954 69164992 -16530762 + (T)n Simple_repeat Simple_repeat 1 38 0 2325 109 0 3 chr15 69165764 69166077 -16529677 - AluSx SINE Alu 0 312 1 227 217 72 14 chr15 69167189 69167258 -16528496 - MIR SINE MIR -109 153 81 220 191 0 21 chr15 69167332 69167379 -16528375 - MIR SINE MIR -108 154 109 201 282 173 0 chr15 69167435 69167545 -16528209 - MIR3 SINE MIR -2 206 78 2484 80 0 0 chr15 69167906 69168207 -16527547 + AluY SINE Alu 1 301 -10 1709 162 14 17 chr15 69168235 69168532 -16527222 - AluJo SINE Alu -16 296 1 224 329 0 0 chr15 69168577 69168659 -16527095 - L2 LINE L2 -4 3268 3187 506 278 112 23 chr15 69169835 69170094 -16525660 + L2 LINE L2 3031 3312 -1 264 239 70 0 chr15 69170762 69170833 -16524921 + MIR SINE MIR 120 195 -67 393 270 218 21 chr15 69172949 69173526 -16522228 + L2 LINE L2 2622 3313 0 426 207 30 5 chr15 69173742 69173852 -16521902 + MIR SINE MIR 42 148 -63 2399 73 0 36 chr15 69174009 69174310 -16521444 + AluSg SINE Alu 3 292 -18 356 200 0 104 chr15 69174310 69174435 -16521319 + L1ME1 LINE L1 5928 6039 -127 354 309 8 8 chr15 69174446 69174572 -16521182 - MIR SINE MIR -112 150 25 1331 98 0 0 chr15 69174575 69174738 -16521016 - AluSg/x SINE Alu -15 295 133 1342 245 70 17 chr15 69174979 69175334 -16520420 - MER63 DNA MER1_type -9 1051 678 477 261 101 6 chr15 69175549 69175723 -16520031 - MIR SINE MIR -53 209 21 376 230 149 27 chr15 69176921 69177069 -16518685 - MIR SINE MIR -21 241 76 180 0 0 0 chr15 69177141 69177161 -16518593 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 191 402 22 11 chr15 69177717 69177896 -16517858 + L2 LINE L2 2628 2808 -506 493 245 0 0 chr15 69178084 69178190 -16517564 - FLAM_A SINE Alu -36 106 1 319 289 22 0 chr15 69178205 69178295 -16517459 - L2 LINE L2 -29 3243 3152 2030 173 0 0 chr15 69178651 69178958 -16516796 - AluSx SINE Alu 0 312 6 198 190 240 66 chr15 69179269 69179390 -16516364 + MIR SINE MIR 76 217 -45 568 284 31 58 chr15 69179622 69179970 -16515784 - L1ME LINE L1 -511 5651 5290 2164 77 0 50 chr15 69179994 69180320 -16515434 - AluY SINE Alu 0 311 1 317 261 72 27 chr15 69180463 69180574 -16515180 - L1MC5 LINE L1 -29 7932 7817 2287 84 3 0 chr15 69180771 69181084 -16514670 - AluSp SINE Alu 0 314 1 795 117 0 8 chr15 69181693 69181813 -16513941 - FLAM_C SINE Alu -14 119 1 315 252 212 13 chr15 69182657 69182808 -16512946 - MIR SINE MIR -76 186 6 461 198 10 10 chr15 69182809 69182910 -16512844 - MIR SINE MIR -120 142 42 253 327 193 25 chr15 69183239 69183670 -16512084 - L2 LINE L2 -375 2939 2437 2230 122 7 3 chr15 69183825 69184129 -16511625 + AluSx SINE Alu 1 305 -7 316 289 101 7 chr15 69184624 69184773 -16510981 + MER103 DNA DNA 3 165 -1 2205 97 3 47 chr15 69185069 69185388 -16510366 - AluSq SINE Alu -3 310 6 316 194 16 0 chr15 69185572 69185634 -16510120 - U7 snRNA snRNA 0 63 1 2332 97 0 0 chr15 69185704 69186003 -16509751 - AluSq SINE Alu -10 303 5 515 305 90 30 chr15 69186158 69186553 -16509201 - L1ME LINE L1 -449 5672 5258 22 56 0 0 chr15 69186585 69186621 -16509133 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 75 chr15 69186798 69186838 -16508916 + AT_rich Low_complexity Low_complexity 1 37 0 2234 111 0 0 chr15 69187022 69187302 -16508452 + AluSx SINE Alu 2 309 0 253 0 0 0 chr15 69187302 69187330 -16508424 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 641 200 67 0 chr15 69187355 69187475 -16508279 + FRAM SINE Alu 38 165 -11 515 283 30 61 chr15 69187567 69187797 -16507957 - MIR SINE MIR -12 250 28 320 332 88 42 chr15 69187832 69188094 -16507660 - L1MC4a LINE L1 -1846 5962 5689 323 286 65 73 chr15 69188102 69188221 -16507533 - L1ME LINE L1 -392 5729 5611 191 36 36 0 chr15 69188221 69188249 -16507505 + (TA)n Simple_repeat Simple_repeat 1 29 0 2042 64 0 8 chr15 69188249 69188515 -16507239 - AluSx SINE Alu -46 266 3 323 286 65 73 chr15 69188515 69188642 -16507112 - L1ME LINE L1 -508 5613 5484 2254 64 0 3 chr15 69190246 69190544 -16505210 + AluY SINE Alu 1 297 -14 900 140 0 0 chr15 69190677 69190820 -16504934 - FLAM_C SINE Alu 0 143 1 3505 143 36 62 chr15 69190821 69191540 -16504214 - L1MB8 LINE L1 -40 6138 5441 2001 126 17 0 chr15 69191540 69191833 -16503921 - AluSx SINE Alu -14 298 1 3505 143 36 62 chr15 69191833 69191916 -16503838 - L1MB8 LINE L1 -737 5441 5357 424 242 154 6 chr15 69192532 69192690 -16503064 + MER5A DNA MER1_type 5 189 0 2246 113 0 0 chr15 69192860 69193161 -16502593 + AluSx SINE Alu 1 301 -11 533 171 166 11 chr15 69193161 69193335 -16502419 + L1M4 LINE L1 2884 3088 -3058 2131 103 7 0 chr15 69193335 69193626 -16502128 + AluSp SINE Alu 1 293 -20 305 324 73 7 chr15 69193649 69193785 -16501969 - L1MC4a LINE L1 -1607 6201 6057 1190 257 47 88 chr15 69193885 69194317 -16501437 - L1MC4a LINE L1 -1907 5901 5499 1956 148 3 0 chr15 69194317 69194614 -16501140 - AluJb SINE Alu -14 298 1 1190 257 47 88 chr15 69194614 69194781 -16500973 - L1MC4a LINE L1 -2309 5499 5327 2073 104 0 0 chr15 69194794 69195072 -16500682 - AluSg SINE Alu -32 278 1 305 281 44 35 chr15 69195072 69195160 -16500594 - L1ME LINE L1 -374 5747 5656 1526 154 92 0 chr15 69195160 69195432 -16500322 - AluSx SINE Alu -15 297 1 305 281 44 35 chr15 69195432 69195457 -16500297 - L1ME LINE L1 -465 5656 5633 1787 210 77 57 chr15 69196026 69196521 -16499233 + MLT1D LTR MaLR 1 505 0 2155 105 13 0 chr15 69196631 69196937 -16498817 + AluSx SINE Alu 1 310 -2 183 281 34 45 chr15 69197643 69197732 -16498022 - MIR SINE MIR -60 148 61 259 270 0 0 chr15 69198480 69198543 -16497211 + MIR3 SINE MIR 109 171 -37 488 163 12 0 chr15 69199485 69199571 -16496183 + MIR SINE MIR 67 153 -109 2431 77 0 0 chr15 69200608 69200918 -16494836 - AluY SINE Alu -1 310 1 332 251 53 57 chr15 69201275 69201551 -16494203 - L2 LINE L2 -223 3049 2771 207 255 0 0 chr15 69201552 69201599 -16494155 - L2 LINE L2 -2 3270 3224 1194 126 0 22 chr15 69201679 69201861 -16493893 - AluSc SINE Alu 0 309 132 2094 109 0 3 chr15 69201861 69202185 -16493569 - AluSg SINE Alu 0 310 1 417 265 127 5 chr15 69202273 69202462 -16493292 - L2 LINE L2 -237 3035 2824 458 279 236 46 chr15 69203776 69204352 -16491402 - L2 LINE L2 -3 3269 2579 2160 85 24 10 chr15 69204569 69204864 -16490890 - AluSg SINE Alu -11 299 1 393 264 129 0 chr15 69204886 69205026 -16490728 - MIR SINE MIR -42 220 63 230 274 196 0 chr15 69207301 69207403 -16488351 + MIR SINE MIR 46 167 -95 182 189 0 0 chr15 69208798 69208835 -16486919 + L3 LINE CR1 1434 1470 -107 628 260 40 30 chr15 69211275 69211435 -16484319 + MIR SINE MIR 34 198 -64 2258 89 30 0 chr15 69211435 69211739 -16484015 + AluSp SINE Alu 1 313 0 628 260 40 30 chr15 69211739 69211778 -16483976 + MIR SINE MIR 198 235 -27 460 261 56 0 chr15 69211976 69212118 -16483636 - L2 LINE L2 -213 3059 2910 205 208 287 10 chr15 69213181 69213286 -16482468 - MIR SINE MIR -55 153 21 2145 89 4 0 chr15 69213305 69213628 -16482126 - AluSg SINE Alu 0 324 1 2045 133 0 0 chr15 69213640 69213933 -16481821 - AluSx SINE Alu -19 293 1 186 197 91 76 chr15 69214028 69214094 -16481660 - L2 LINE L2 -12 3301 3235 642 176 88 0 chr15 69214192 69214317 -16481437 + MIR SINE MIR 17 152 -110 218 233 300 0 chr15 69215061 69215151 -16480603 + MIR SINE MIR 33 149 -59 252 267 68 57 chr15 69215308 69215484 -16480270 + L1ME4a LINE L1 5684 5861 -260 2355 61 0 32 chr15 69215491 69215803 -16479951 + AluY SINE Alu 1 302 -9 652 223 51 33 chr15 69215808 69216023 -16479731 - HAL1 LINE L1 -220 2287 2069 1523 173 23 27 chr15 69216054 69216355 -16479399 - AluJo SINE Alu -12 300 1 2265 282 138 36 chr15 69216452 69217768 -16477986 - HAL1 LINE L1 -742 1765 271 2062 106 0 0 chr15 69217768 69218086 -16477668 - AluSx SINE Alu 0 318 1 2265 282 138 36 chr15 69218086 69218285 -16477469 - HAL1 LINE L1 -2236 271 94 276 252 130 9 chr15 69218440 69218555 -16477199 + L1ME4a LINE L1 5962 6090 -31 2186 109 0 7 chr15 69218564 69218868 -16476886 - AluSx SINE Alu -9 303 2 203 343 45 0 chr15 69220284 69220351 -16475403 - MIR SINE MIR -183 79 10 2026 122 0 46 chr15 69220535 69220862 -16474892 + AluSx SINE Alu 1 312 0 181 345 35 11 chr15 69221571 69221658 -16474096 + MIR SINE MIR 28 116 -146 486 260 102 50 chr15 69222031 69222198 -16473556 - L1MC5 LINE L1 -64 7897 7740 2217 73 40 3 chr15 69222198 69222498 -16473256 - AluY SINE Alu 0 311 1 2248 87 0 10 chr15 69222498 69222795 -16472959 - AluSx SINE Alu -16 296 2 486 260 102 50 chr15 69222795 69222987 -16472767 - L1MC5 LINE L1 -220 7741 7518 477 272 0 22 chr15 69223826 69224010 -16471744 + (TG)n Simple_repeat Simple_repeat 1 180 0 505 245 5 27 chr15 69224161 69224345 -16471409 + (TG)n Simple_repeat Simple_repeat 1 180 0 394 261 0 43 chr15 69224491 69224679 -16471075 + (TG)n Simple_repeat Simple_repeat 1 180 0 2193 88 0 3 chr15 69224857 69225153 -16470601 - AluY SINE Alu -16 295 1 508 276 139 37 chr15 69225510 69225967 -16469787 + MLT1K LTR MaLR 10 563 -25 337 204 34 34 chr15 69226017 69226105 -16469649 + MIR SINE MIR 113 200 -62 243 271 100 0 chr15 69227463 69227533 -16468221 + L2 LINE L2 3194 3270 -2 730 148 52 7 chr15 69227609 69227764 -16467990 + L1MB3 LINE L1 5769 5930 -253 2264 91 3 22 chr15 69227802 69228120 -16467634 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr15 69228365 69228386 -16467368 + AT_rich Low_complexity Low_complexity 1 21 0 799 126 14 63 chr15 69228386 69228529 -16467225 - AluJo SINE Alu -176 136 1 2339 72 0 3 chr15 69228584 69228875 -16466879 + AluSc SINE Alu 1 290 -19 1574 179 50 0 chr15 69229107 69229404 -16466350 + AluJb SINE Alu 1 312 0 944 157 7 0 chr15 69229474 69229627 -16466127 - AluSg/x SINE Alu -11 301 148 907 67 59 8 chr15 69229729 69229986 -16465768 - SVA Other Other -520 866 662 2157 88 30 84 chr15 69230039 69231022 -16464732 - SVA Other Other -518 868 442 318 203 139 63 chr15 69231023 69231181 -16464573 + MER104 DNA Tc2 8 177 -3 571 316 23 38 chr15 69231934 69232200 -16463554 + L3 LINE CR1 1277 1538 -39 598 243 36 121 chr15 69232218 69232498 -16463256 - MIR SINE MIR -5 257 2 187 220 17 68 chr15 69232622 69232681 -16463073 - L2 LINE L2 -38 3275 3220 2224 99 0 0 chr15 69232911 69233205 -16462549 + AluSg SINE Alu 5 298 -12 1796 138 11 21 chr15 69233551 69233834 -16461920 + AluJb SINE Alu 23 302 -10 2694 79 6 3 chr15 69234497 69234851 -16460903 + L1PA7 LINE L1 5787 6141 -13 2134 105 0 3 chr15 69234877 69235171 -16460583 + AluY SINE Alu 1 293 -18 2051 70 0 0 chr15 69235923 69236180 -16459574 + AluY SINE Alu 40 296 -15 1784 146 26 23 chr15 69237140 69237449 -16458305 - AluJo SINE Alu -2 310 1 2063 118 0 48 chr15 69237573 69237719 -16458035 + AluSx SINE Alu 4 121 -191 2467 70 0 3 chr15 69237719 69238019 -16457735 + AluY SINE Alu 2 300 -11 2063 118 0 48 chr15 69238019 69238192 -16457562 + AluSx SINE Alu 121 301 -11 2161 116 10 3 chr15 69239338 69239640 -16456114 + AluSx SINE Alu 1 304 -8 1863 147 0 38 chr15 69239896 69240349 -16455405 + AluJo SINE Alu 1 442 0 496 280 71 34 chr15 69240433 69240701 -16455053 - HAL1b LINE L1 -391 957 680 1267 121 0 30 chr15 69240706 69240888 -16454866 - AluSq SINE Alu 0 313 136 2051 139 10 7 chr15 69240888 69241191 -16454563 - AluSx SINE Alu -8 304 1 1267 121 0 30 chr15 69241191 69241206 -16454548 - AluSq SINE Alu -177 136 122 705 90 0 0 chr15 69241244 69241344 -16454410 + AluSg/x SINE Alu 204 303 -7 1913 130 0 0 chr15 69241516 69241777 -16453977 - AluSg SINE Alu -49 261 1 2333 106 3 0 chr15 69242256 69242559 -16453195 - AluSc SINE Alu -5 304 1 1234 193 44 37 chr15 69242991 69243287 -16452467 - L1M4 LINE L1 -1942 4204 3907 235 315 162 0 chr15 69243675 69243786 -16451968 - MIR SINE MIR -118 144 16 23 0 0 0 chr15 69244046 69244069 -16451685 + GC_rich Low_complexity Low_complexity 1 23 0 1922 190 51 7 chr15 69246380 69246812 -16448942 - L1MB7 LINE L1 0 6184 5734 203 267 143 9 chr15 69247537 69247642 -16448112 - MIR SINE MIR -142 120 2 216 288 25 38 chr15 69247992 69248072 -16447682 - MIR SINE MIR -98 164 86 438 20 0 0 chr15 69248156 69248207 -16447547 + (TG)n Simple_repeat Simple_repeat 1 51 0 1663 109 15 70 chr15 69248373 69248832 -16446922 + SVA Other Other 433 866 -520 7047 57 9 60 chr15 69248894 69249898 -16445856 + SVA Other Other 433 1385 -1 2210 95 46 0 chr15 69250067 69250352 -16445402 - AluSx SINE Alu -14 298 1 195 219 59 92 chr15 69250750 69250869 -16444885 - L3 LINE CR1 0 1577 1463 1752 168 6 32 chr15 69252142 69252457 -16443297 + AluSx SINE Alu 5 311 -1 305 190 130 10 chr15 69252726 69252826 -16442928 - L1ME3A LINE L1 -1 6169 6058 318 266 158 7 chr15 69253223 69253362 -16442392 + L1ME LINE L1 5560 5719 -451 711 192 53 169 chr15 69253417 69253595 -16442159 - HAL1 LINE L1 -1122 1385 1188 2296 116 0 0 chr15 69253595 69253896 -16441858 - AluSx SINE Alu -11 301 1 711 192 53 169 chr15 69253896 69254188 -16441566 - HAL1 LINE L1 -1319 1188 1014 1500 131 0 14 chr15 69254188 69254409 -16441345 - AluSg/x SINE Alu -8 304 87 711 192 53 169 chr15 69254409 69254610 -16441144 - HAL1 LINE L1 -1493 1014 791 471 127 0 25 chr15 69254666 69254745 -16441009 - LTR7 LTR ERV1 0 450 374 553 315 82 48 chr15 69254757 69254804 -16440950 + L1ME4a LINE L1 4733 4777 -1369 1913 161 0 35 chr15 69254804 69255120 -16440634 + AluJo SINE Alu 1 305 -7 553 315 82 48 chr15 69255120 69255364 -16440390 + L1ME4a LINE L1 4777 5034 -1112 1721 194 14 0 chr15 69255978 69256266 -16439488 + AluJb SINE Alu 1 292 -20 2165 147 0 3 chr15 69256447 69256760 -16438994 + AluSx SINE Alu 1 312 0 652 160 40 20 chr15 69257726 69257876 -16437878 - L1MB3 LINE L1 0 6183 6031 1324 156 214 8 chr15 69257878 69258135 -16437619 + AluY SINE Alu 1 310 -1 700 271 97 53 chr15 69258672 69258868 -16436886 + L1ME4a LINE L1 5272 5458 -663 1702 168 30 36 chr15 69258868 69259040 -16436714 - AluJo SINE Alu -8 304 133 2031 129 6 22 chr15 69259040 69259357 -16436397 - AluSx SINE Alu 0 312 1 1702 168 30 36 chr15 69259357 69259488 -16436266 - AluJo SINE Alu -179 133 3 700 271 97 53 chr15 69259488 69259908 -16435846 + L1ME4a LINE L1 5458 5915 -206 1509 149 21 8 chr15 69259911 69260153 -16435601 - AluSg/x SINE Alu -2 310 66 955 140 0 0 chr15 69260399 69260542 -16435212 - FLAM_C SINE Alu 0 143 1 3533 142 36 62 chr15 69260543 69261262 -16434492 - L1MB8 LINE L1 -40 6138 5441 2117 126 17 0 chr15 69261262 69261555 -16434199 - AluSx SINE Alu -14 298 1 3533 142 36 62 chr15 69261555 69261638 -16434116 - L1MB8 LINE L1 -737 5441 5357 463 242 154 6 chr15 69262254 69262412 -16433342 + MER5A DNA MER1_type 5 189 0 2043 126 31 0 chr15 69262581 69262867 -16432887 + AluSx SINE Alu 1 295 -17 2295 88 34 0 chr15 69263042 69263222 -16432532 - AluSg SINE Alu -5 305 110 225 65 0 0 chr15 69263222 69263253 -16432501 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2295 88 34 0 chr15 69263253 69263367 -16432387 - AluSg SINE Alu -200 110 1 2188 126 0 0 chr15 69264973 69265267 -16430487 + AluSx SINE Alu 14 307 -5 2285 97 27 0 chr15 69265269 69265567 -16430187 + AluSg SINE Alu 1 306 -4 2104 135 3 3 chr15 69265835 69266132 -16429622 + AluSx SINE Alu 1 297 -15 620 183 0 0 chr15 69266338 69266442 -16429312 + U6 snRNA snRNA 1 104 -3 2182 98 26 19 chr15 69266554 69266861 -16428893 - AluSc SINE Alu 0 309 1 1776 174 27 3 chr15 69266973 69267266 -16428488 - AluJb SINE Alu -8 304 5 2087 143 0 25 chr15 69267427 69267741 -16428013 + AluSx SINE Alu 1 306 -6 2275 88 7 10 chr15 69267983 69268279 -16427475 + AluSg SINE Alu 1 295 -15 249 309 0 48 chr15 69268375 69268459 -16427295 + MIR SINE MIR 44 123 -85 344 294 181 17 chr15 69268591 69268768 -16426986 + L1M4 LINE L1 3775 3980 -2166 1230 159 73 0 chr15 69268870 69269090 -16426664 - MER46A DNA MER2_type 0 236 1 1554 186 69 4 chr15 69269253 69269368 -16426386 + AluJb SINE Alu 3 109 -203 351 0 0 0 chr15 69269368 69269407 -16426347 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1554 186 69 4 chr15 69269407 69269565 -16426189 + AluJb SINE Alu 109 294 -18 4475 166 48 69 chr15 69269602 69270361 -16425393 - L1MB7 LINE L1 -96 6088 5315 748 216 0 0 chr15 69270361 69270486 -16425268 - FLAM_A SINE Alu -7 126 2 4475 166 48 69 chr15 69270486 69270827 -16424927 - L1MB7 LINE L1 -869 5315 4968 2415 92 0 3 chr15 69270827 69271131 -16424623 + AluSg SINE Alu 1 303 -7 4475 166 48 69 chr15 69271131 69271464 -16424290 - L1MB7 LINE L1 -1216 4968 4630 1529 133 0 9 chr15 69271464 69271682 -16424072 - AluJb SINE Alu -12 300 85 4475 166 48 69 chr15 69271682 69272269 -16423485 - L1MB7 LINE L1 -1554 4630 4120 336 266 92 28 chr15 69272275 69272384 -16423370 - L1MC5 LINE L1 -448 7513 7398 214 301 150 8 chr15 69274266 69274399 -16421355 + MIR SINE MIR 90 241 -21 317 263 162 13 chr15 69274769 69274919 -16420835 - MIR SINE MIR -56 206 35 3727 149 46 8 chr15 69274995 69275158 -16420596 - MER41B LTR ERV1 -1 634 479 2072 92 106 0 chr15 69275158 69275440 -16420314 - AluSp SINE Alu -1 312 1 3727 149 46 8 chr15 69275440 69275886 -16419868 - MER41B LTR ERV1 -156 479 2 191 232 120 64 chr15 69275947 69276072 -16419682 - MIR3 SINE MIR -70 138 7 2260 104 16 3 chr15 69276194 69276501 -16419253 - AluSx SINE Alu -1 311 1 489 167 247 73 chr15 69276512 69276703 -16419051 - MIR SINE MIR -14 248 15 312 333 44 7 chr15 69276777 69276912 -16418842 - MIR3 SINE MIR 0 208 69 337 291 109 6 chr15 69277199 69277364 -16418390 + L2 LINE L2 2855 3036 -236 238 154 0 0 chr15 69277713 69277752 -16418002 + MLT1B LTR MaLR 1 39 -351 364 150 0 0 chr15 69277752 69277812 -16417942 + AluS SINE Alu 1 60 -243 2137 124 10 0 chr15 69277839 69278138 -16417616 + AluSx SINE Alu 1 302 -10 2590 86 0 0 chr15 69278150 69278463 -16417291 + AluSq SINE Alu 1 313 0 443 221 105 132 chr15 69278779 69279037 -16416717 - MIR SINE MIR -4 258 8 251 277 25 59 chr15 69279187 69279306 -16416448 - MIR SINE MIR -64 144 30 1174 203 23 0 chr15 69279567 69279784 -16415970 - MER58A DNA MER1_type 0 224 3 2111 130 3 7 chr15 69279818 69280118 -16415636 - AluSx SINE Alu -13 299 1 2528 88 0 0 chr15 69280301 69280606 -16415148 - AluSx SINE Alu -7 305 1 2609 54 0 0 chr15 69281860 69282157 -16413597 + AluY SINE Alu 1 297 -14 589 236 30 125 chr15 69283026 69283331 -16412423 + L2 LINE L2 2996 3271 -1 485 282 125 5 chr15 69283514 69283750 -16412004 + L1ME3A LINE L1 5631 5897 -296 2303 116 0 25 chr15 69283774 69283912 -16411842 + AluSx SINE Alu 1 141 -171 2363 96 0 10 chr15 69283912 69284215 -16411539 + AluSg SINE Alu 1 300 -10 2303 116 0 25 chr15 69284215 69284396 -16411358 + AluSx SINE Alu 141 312 0 937 96 0 0 chr15 69284655 69284770 -16410984 - AluSq/x SINE Alu -192 120 6 641 267 231 9 chr15 69285264 69285597 -16410157 + MLT1I LTR MaLR 3 409 0 2173 102 3 14 chr15 69285649 69286055 -16409699 + AluSp SINE Alu 2 404 0 798 129 7 50 chr15 69286512 69286651 -16409103 - FLAM_C SINE Alu 0 133 1 324 102 0 0 chr15 69286657 69286706 -16409048 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 788 111 41 18 chr15 69286708 69286879 -16408875 + CT-rich Low_complexity Low_complexity 1 175 0 2359 101 0 3 chr15 69286879 69287187 -16408567 - AluSx SINE Alu -5 307 1 2462 73 0 7 chr15 69287255 69287557 -16408197 - AluY SINE Alu -11 300 1 2424 155 61 3 chr15 69287657 69288131 -16407623 - MER44D DNA MER2_type 0 605 14 280 169 34 0 chr15 69288159 69288218 -16407536 + MLT1L LTR MaLR 503 563 -52 895 233 49 84 chr15 69289694 69290063 -16405691 + L1MC4 LINE L1 7624 7979 -63 698 246 57 32 chr15 69291794 69292042 -16403712 + L1ME3A LINE L1 3864 4117 -2029 1957 109 69 0 chr15 69292059 69292334 -16403420 - AluSx SINE Alu -18 294 1 592 285 49 30 chr15 69292358 69292535 -16403219 + L1ME3A LINE L1 5300 5485 -679 1337 221 79 72 chr15 69292535 69292938 -16402816 - MLT1I LTR MaLR -3 406 1 592 285 49 30 chr15 69292938 69293027 -16402727 + L1ME3A LINE L1 5485 5571 -593 704 287 67 21 chr15 69293166 69293448 -16402306 + L1ME3A LINE L1 5615 5909 -261 2334 92 0 13 chr15 69293468 69293774 -16401980 + AluSx SINE Alu 1 302 -10 2131 89 64 0 chr15 69293980 69294260 -16401494 - AluSp SINE Alu -15 298 1 871 162 0 0 chr15 69294864 69295000 -16400754 - AluJo SINE Alu -176 136 1 1053 287 77 31 chr15 69295083 69295539 -16400215 + MLT1H LTR MaLR 71 547 -2 291 157 0 0 chr15 69295658 69295709 -16400045 + (CA)n Simple_repeat Simple_repeat 2 52 0 2969 116 11 36 chr15 69295841 69296280 -16399474 - MSTC LTR MaLR 0 428 1 243 0 0 0 chr15 69297060 69297087 -16398667 + (TG)n Simple_repeat Simple_repeat 1 27 0 258 236 270 0 chr15 69297843 69297932 -16397822 + L2 LINE L2 3183 3295 -18 195 186 47 0 chr15 69297951 69297994 -16397760 + L2 LINE L2 3269 3313 0 696 269 117 0 chr15 69298472 69298669 -16397085 - MIR SINE MIR -4 258 39 245 241 172 11 chr15 69298707 69298794 -16396960 - L1ME3A LINE L1 0 6170 6070 1928 127 42 0 chr15 69298806 69299089 -16396665 - AluJo SINE Alu -17 295 1 240 354 38 75 chr15 69299144 69299356 -16396398 - MIR SINE MIR -46 216 13 2431 86 7 0 chr15 69299359 69299660 -16396094 - AluSx SINE Alu -9 303 1 366 253 35 0 chr15 69301048 69301135 -16394619 + MER63 DNA MER1_type 23 738 -324 277 186 200 0 chr15 69301142 69301212 -16394542 + MER63 DNA MER1_type 977 1060 0 2007 129 16 7 chr15 69301593 69301902 -16393852 - AluSx SINE Alu 0 312 1 26 30 0 0 chr15 69301923 69301956 -16393798 + AT_rich Low_complexity Low_complexity 1 33 0 764 186 8 0 chr15 69302134 69302258 -16393496 - FLAM_C SINE Alu -8 125 1 701 157 15 22 chr15 69303300 69303434 -16392320 + MER5A DNA MER1_type 1 133 -56 567 217 0 9 chr15 69303436 69303542 -16392212 - FLAM_A SINE Alu -18 124 20 349 206 16 0 chr15 69303543 69303606 -16392148 + MER5A DNA MER1_type 125 188 -1 286 247 56 0 chr15 69303608 69303697 -16392057 - L1MC4a LINE L1 -1904 5904 5811 373 237 26 159 chr15 69303717 69303841 -16391913 - L1ME3A LINE L1 -8 6162 6082 2062 135 23 0 chr15 69303841 69304144 -16391610 + AluJb SINE Alu 1 310 -2 373 237 26 159 chr15 69304144 69304251 -16391503 - L1ME3A LINE L1 -88 6082 5962 2555 253 19 22 chr15 69304306 69304624 -16391130 - L1ME3A LINE L1 -208 5962 5644 680 186 18 9 chr15 69304624 69304737 -16391017 - MER81 DNA DNA 0 114 1 2555 253 19 22 chr15 69304737 69305323 -16390431 - L1ME3A LINE L1 -526 5644 5062 1854 155 0 29 chr15 69305338 69305648 -16390106 - AluJb SINE Alu -11 301 1 943 143 0 0 chr15 69305654 69305787 -16389967 - AluSq/x SINE Alu -179 133 1 271 327 52 48 chr15 69305794 69306063 -16389691 - L1ME3A LINE L1 -1094 5052 4783 233 188 47 0 chr15 69306075 69306139 -16389615 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 860 229 6 6 chr15 69306259 69306425 -16389329 - AluJo SINE Alu -26 286 121 378 0 0 0 chr15 69306462 69306504 -16389250 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1562 195 14 4 chr15 69306504 69306781 -16388973 - AluJb SINE Alu -32 280 1 191 388 148 21 chr15 69306936 69307227 -16388527 + L2 LINE L2 2945 3272 0 701 178 30 102 chr15 69307651 69307915 -16387839 + L1MEc LINE L1 2081 2325 -4071 1047 170 13 0 chr15 69307918 69308077 -16387677 + FAM SINE Alu 2 162 -13 1556 190 18 7 chr15 69308150 69308429 -16387325 - AluJb SINE Alu -30 282 1 3750 221 60 44 chr15 69308490 69309133 -16386621 + L1MEc LINE L1 2315 2947 -3268 2368 107 0 0 chr15 69309133 69309432 -16386322 + AluSg SINE Alu 1 299 -11 3750 221 60 44 chr15 69309432 69309606 -16386148 + L1MEc LINE L1 2947 3117 -3098 2319 97 3 3 chr15 69309606 69309915 -16385839 + AluSg1 SINE Alu 1 309 0 3750 221 60 44 chr15 69309915 69310405 -16385349 + L1MEc LINE L1 3117 3643 -2572 1133 208 42 5 chr15 69310408 69310624 -16385130 + AluJb SINE Alu 85 308 -4 1071 78 0 0 chr15 69310789 69310918 -16384836 + AluSq/x SINE Alu 1 129 -184 192 40 0 0 chr15 69310918 69310943 -16384811 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1845 173 3 10 chr15 69311054 69311225 -16384529 - AluJb SINE Alu -7 305 135 2316 74 32 0 chr15 69311225 69311510 -16384244 - AluSg SINE Alu -16 294 1 1845 173 3 10 chr15 69311510 69311645 -16384109 - AluJb SINE Alu -177 135 1 239 133 0 22 chr15 69311914 69311959 -16383795 - MER69 DNA AcHobo -48 2478 2435 * 1190 193 83 0 chr15 69311954 69312182 -16383572 - MER69 DNA AcHobo -979 247 1 2157 112 3 34 chr15 69312344 69312667 -16383087 + AluSp SINE Alu 1 313 0 23 0 0 0 chr15 69312680 69312703 -16383051 + AT_rich Low_complexity Low_complexity 1 23 0 2257 86 20 3 chr15 69313821 69314123 -16381631 + AluY SINE Alu 1 307 -4 2078 125 14 7 chr15 69315083 69315378 -16380376 + AluSx SINE Alu 1 297 -15 777 104 9 0 chr15 69315378 69315473 -16380281 - U6 snRNA snRNA -8 99 1 645 196 0 9 chr15 69315750 69315879 -16379875 + MLT1C LTR MaLR 263 467 0 2329 103 0 0 chr15 69315933 69316234 -16379520 + AluSx SINE Alu 2 302 -10 633 195 0 8 chr15 69316253 69316376 -16379378 - Zaphod DNA AcHobo -10 4021 3900 621 227 0 0 chr15 69316376 69316495 -16379259 + L1MD3 LINE L1 7159 7277 -718 442 156 16 123 chr15 69316496 69316557 -16379197 + MLT1F1 LTR MaLR 1 44 -523 2438 69 7 3 chr15 69316557 69316862 -16378892 - AluSq SINE Alu -7 306 1 442 156 16 123 chr15 69316862 69316922 -16378832 + MLT1F1 LTR MaLR 44 109 -458 3022 175 28 38 chr15 69316923 69317523 -16378231 + L1MD3 LINE L1 7393 7986 -9 780 184 0 28 chr15 69318186 69318327 -16377427 - AluJo SINE Alu -174 138 2 657 228 119 51 chr15 69318328 69318638 -16377116 - L1MC5 LINE L1 -431 7530 7250 812 197 52 77 chr15 69318681 69318991 -16376763 - L1MC5 LINE L1 -737 7224 6923 275 252 29 29 chr15 69319008 69319111 -16376643 - L1P LINE L1 -2455 3691 3589 * 326 264 30 36 chr15 69319094 69319117 -16376637 - L1MA10 LINE L1 0 6334 6312 2084 204 70 22 chr15 69319117 69319515 -16376239 - L1ME2 LINE L1 -13 6151 5719 2359 97 0 0 chr15 69319515 69319826 -16375928 - AluY SINE Alu 0 311 1 2084 204 70 22 chr15 69319826 69319971 -16375783 - L1ME2 LINE L1 -445 5719 5582 707 155 0 0 chr15 69319972 69320069 -16375685 + FLAM_C SINE Alu 20 116 -27 618 114 45 131 chr15 69320076 69320252 -16375502 - L1ME2 LINE L1 -798 5348 5188 21 0 0 0 chr15 69320252 69320273 -16375481 + AT_rich Low_complexity Low_complexity 1 21 0 3127 177 81 44 chr15 69321416 69322154 -16373600 - L1ME1 LINE L1 0 6178 5440 1959 125 21 0 chr15 69322154 69322434 -16373320 - AluSx SINE Alu -26 286 1 3127 177 81 44 chr15 69322434 69322952 -16372802 - L1ME1 LINE L1 -738 5440 4943 956 248 28 21 chr15 69322929 69323211 -16372543 - L1ME2 LINE L1 -996 5150 4867 * 827 117 0 47 chr15 69323259 69323387 -16372367 + FLAM_C SINE Alu 13 134 -9 356 289 81 97 chr15 69323419 69323800 -16371954 - L2 LINE L2 0 3272 2898 258 293 78 0 chr15 69325278 69325394 -16370360 + L1 LINE L1 4208 4332 -1814 1998 120 27 10 chr15 69325394 69325686 -16370068 + AluSp SINE Alu 1 297 -16 2370 84 0 7 chr15 69325931 69326229 -16369525 + AluSx SINE Alu 1 296 -16 535 240 27 13 chr15 69326469 69326619 -16369135 + MER104 DNA Tc2 2 153 -27 540 290 131 30 chr15 69326760 69327218 -16368536 + L2 LINE L2 2764 3259 -54 2140 92 54 3 chr15 69327350 69327644 -16368110 - AluSg SINE Alu -1 309 1 323 233 27 0 chr15 69327892 69327965 -16367789 - Alu SINE Alu -2 298 224 234 167 19 0 chr15 69327970 69328024 -16367730 + HsTC2 DNA Tc2 2 56 -1842 421 108 77 0 chr15 69328024 69328089 -16367665 + AluSp/q SINE Alu 230 299 -14 360 248 174 25 chr15 69378235 69378396 -16317358 - MIR SINE MIR -73 189 5 330 395 57 37 chr15 69378486 69378922 -16316832 + L2 LINE L2 2825 3269 -3 184 57 29 29 chr15 69379442 69379477 -16316277 + (GGGAA)n Simple_repeat Simple_repeat 2 36 0 347 247 241 0 chr15 69380778 69380940 -16314814 + MIR SINE MIR 33 233 -29 463 230 50 0 chr15 69380961 69381061 -16314693 - MIR SINE MIR -105 157 53 280 309 36 56 chr15 69381515 69381639 -16314115 + L2 LINE L2 1335 1453 -1861 2168 108 10 3 chr15 69381639 69381934 -16313820 - AluSx SINE Alu -15 297 1 280 309 36 56 chr15 69381934 69382058 -16313696 + L2 LINE L2 1453 1578 -1736 457 345 164 20 chr15 69382066 69383291 -16312463 + L2 LINE L2 1802 3272 0 233 158 0 0 chr15 69383419 69383457 -16312297 + MLT1A1 LTR MaLR 1 38 -358 892 131 0 0 chr15 69383459 69383596 -16312158 + AluSg/x SINE Alu 175 311 -1 2091 105 7 0 chr15 69383690 69383975 -16311779 - AluSx SINE Alu -21 291 5 1243 184 64 8 chr15 69384001 69384267 -16311487 + MLT1A1 LTR MaLR 30 310 -55 810 184 80 31 chr15 69384272 69384435 -16311319 + FAM SINE Alu 5 175 0 26 0 0 0 chr15 69384435 69384461 -16311293 + AT_rich Low_complexity Low_complexity 1 26 0 327 197 14 0 chr15 69384462 69384533 -16311221 + MLT1A1 LTR MaLR 293 364 -1 2012 124 0 3 chr15 69385313 69385622 -16310132 + AluSg SINE Alu 1 308 0 263 303 131 0 chr15 69385757 69385879 -16309875 + MIR SINE MIR 119 256 -6 207 133 0 44 chr15 69386367 69386412 -16309342 + (GGGAA)n Simple_repeat Simple_repeat 1 43 0 246 335 125 7 chr15 69387616 69387768 -16307986 + MIR SINE MIR 38 207 -55 222 341 88 0 chr15 69387957 69388048 -16307706 - MIR SINE MIR -73 135 37 801 147 86 49 chr15 69388224 69388443 -16307311 - L1MA9 LINE L1 -22 6290 6080 2048 108 28 0 chr15 69388443 69388730 -16307024 - AluSx SINE Alu -17 295 1 801 147 86 49 chr15 69388730 69388836 -16306918 - L1MA9 LINE L1 -232 6080 5857 407 255 234 7 chr15 69389966 69390107 -16305647 + MIR SINE MIR 22 194 -68 354 23 0 0 chr15 69390453 69390496 -16305258 + (CA)n Simple_repeat Simple_repeat 2 44 0 567 176 101 44 chr15 69390496 69390612 -16305142 + ORSL DNA AcHobo 13 121 -154 189 0 0 0 chr15 69390612 69390633 -16305121 + (TA)n Simple_repeat Simple_repeat 1 21 0 1975 113 14 0 chr15 69390633 69390926 -16304828 - AluSx SINE Alu -15 297 1 567 176 101 44 chr15 69390926 69390967 -16304787 + ORSL DNA AcHobo 120 180 -95 806 111 0 0 chr15 69391009 69391117 -16304637 + FLAM_A SINE Alu 18 125 -17 282 100 40 0 chr15 69391136 69391186 -16304568 + ORSL DNA AcHobo 181 232 -43 877 166 80 37 chr15 69391421 69391608 -16304146 - MER3 DNA MER1_type -14 195 1 884 168 87 12 chr15 69391977 69392132 -16303622 - AluSg/x SINE Alu -9 303 132 2244 95 3 0 chr15 69392132 69392437 -16303317 - AluSx SINE Alu -6 306 1 884 168 87 12 chr15 69392437 69392454 -16303300 - AluSg/x SINE Alu -180 132 118 3084 241 92 42 chr15 69392460 69392989 -16302765 + MER69 DNA AcHobo 1 595 -1931 2181 103 3 6 chr15 69392989 69393300 -16302454 + AluSx SINE Alu 1 310 -2 3084 241 92 42 chr15 69393300 69393671 -16302083 + MER69 DNA AcHobo 595 946 -1580 825 126 0 0 chr15 69393844 69393963 -16301791 - AluSg/x SINE Alu -6 306 188 1479 103 14 31 chr15 69393963 69394186 -16301568 - AluSx SINE Alu -93 219 1 678 208 8 0 chr15 69394543 69394663 -16301091 + AluJo SINE Alu 2 122 -190 189 0 0 0 chr15 69394663 69394684 -16301070 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 819 223 0 23 chr15 69394767 69394942 -16300812 + AluJo SINE Alu 132 302 -10 267 91 0 91 chr15 69395103 69395147 -16300607 - LTR8 LTR ERV1 -104 587 548 1121 226 16 98 chr15 69395147 69395269 -16300485 + L1ME3A LINE L1 5569 5699 -471 1281 211 39 4 chr15 69395269 69395549 -16300205 + AluJb SINE Alu 1 290 -22 1649 100 0 17 chr15 69395552 69395792 -16299962 + AluSx SINE Alu 55 290 -22 1121 226 16 98 chr15 69395792 69395816 -16299938 + L1ME3A LINE L1 5701 5725 -445 2300 98 0 0 chr15 69395816 69396123 -16299631 + AluSc SINE Alu 1 307 -2 1121 226 16 98 chr15 69396123 69396400 -16299354 + L1ME3A LINE L1 5725 5962 -208 1200 193 93 11 chr15 69396492 69396761 -16298993 + AluJo SINE Alu 1 291 -21 350 242 24 5 chr15 69397014 69397134 -16298620 + MERVL LTR ERVL 1091 1211 -3785 668 251 103 66 chr15 69397371 69397442 -16298312 + MERVL LTR ERVL 1600 1667 -3329 2022 130 3 0 chr15 69397442 69397743 -16298011 + AluSx SINE Alu 1 302 -10 668 251 103 66 chr15 69397743 69397907 -16297847 + MERVL LTR ERVL 1667 1853 -3143 2027 94 16 26 chr15 69397907 69398214 -16297540 + AluSx SINE Alu 2 305 -7 668 251 103 66 chr15 69398214 69398296 -16297458 + MERVL LTR ERVL 1853 1930 -3066 698 160 16 32 chr15 69398310 69398435 -16297319 - FLAM_C SINE Alu -17 126 4 1871 147 7 7 chr15 69398456 69398756 -16296998 - AluJb SINE Alu -12 300 1 469 295 58 0 chr15 69398762 69398901 -16296853 + MERVL LTR ERVL 1928 2074 -2922 270 0 0 0 chr15 69398972 69399002 -16296752 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2169 114 0 3 chr15 69399054 69399362 -16296392 - AluSx SINE Alu -5 307 1 416 173 338 23 chr15 69399362 69399495 -16296259 - AluJo SINE Alu -12 290 116 22 0 0 0 chr15 69399549 69399571 -16296183 + AT_rich Low_complexity Low_complexity 1 22 0 1546 168 48 0 chr15 69399576 69399844 -16295910 + AluJo SINE Alu 7 287 -25 23 0 0 29 chr15 69399844 69399855 -16295899 + AT_rich Low_complexity Low_complexity 1 11 -22 2093 136 0 0 chr15 69399855 69400163 -16295591 + AluSx SINE Alu 1 308 -4 23 0 0 29 chr15 69400163 69400185 -16295569 + AT_rich Low_complexity Low_complexity 11 33 0 577 223 26 106 chr15 69400185 69400441 -16295313 + L1MC4a LINE L1 5676 5826 -336 629 300 53 52 chr15 69400450 69400469 -16295285 - L2 LINE L2 -3 3310 3293 2120 102 13 0 chr15 69400469 69400772 -16294982 + AluSq SINE Alu 1 307 -6 629 300 53 52 chr15 69400772 69401201 -16294553 - L2 LINE L2 -20 3293 2806 302 332 49 36 chr15 69401230 69401281 -16294473 + L1ME4a LINE L1 5891 5940 -181 1852 116 24 3 chr15 69401281 69401573 -16294181 - AluSg SINE Alu -12 298 1 302 332 49 36 chr15 69401573 69401744 -16294010 + L1ME4a LINE L1 5940 6116 -5 702 310 66 38 chr15 69401775 69402272 -16293482 + L1ME4a LINE L1 5387 5897 -224 742 167 23 38 chr15 69402327 69402459 -16293295 + AluJo SINE Alu 3 132 -170 2012 130 0 23 chr15 69402579 69402886 -16292868 + AluSx SINE Alu 1 300 -12 696 195 43 30 chr15 69402918 69403082 -16292672 + AluJo SINE Alu 137 302 0 25 31 0 0 chr15 69403179 69403211 -16292543 + AT_rich Low_complexity Low_complexity 1 32 0 2217 86 0 19 chr15 69403361 69403676 -16292078 - AluY SINE Alu -2 309 1 482 146 31 0 chr15 69403685 69403781 -16291973 - L1MB3 LINE L1 0 6183 6085 864 150 0 90 chr15 69403781 69403963 -16291791 - AluJo/FRAM SINE Alu -16 296 129 2078 114 3 0 chr15 69403983 69404281 -16291473 - AluSx SINE Alu -13 299 1 1556 131 8 8 chr15 69404292 69404536 -16291218 - AluJb SINE Alu -25 287 44 1812 131 0 0 chr15 69404536 69404796 -16290958 - AluSq SINE Alu -53 260 1 2214 103 3 0 chr15 69405639 69405939 -16289815 + AluSx SINE Alu 1 301 -11 506 59 15 0 chr15 69406278 69406346 -16289408 + MER41A LTR ERV1 398 466 -88 2448 63 3 0 chr15 69406398 69406700 -16289054 + AluSp SINE Alu 1 303 -10 3509 147 17 15 chr15 69407081 69407673 -16288081 + L1MB3 LINE L1 5506 6098 -85 2085 128 0 3 chr15 69407674 69407979 -16287775 + AluSx SINE Alu 1 304 -8 794 182 0 15 chr15 69407989 69408121 -16287633 + FLAM_C SINE Alu 1 130 -3 4040 103 54 76 chr15 69408137 69408873 -16286881 - Tigger2 DNA MER2_type 0 2718 1999 247 263 0 13 chr15 69409136 69409212 -16286542 - L1MC4 LINE L1 -444 7598 7524 492 163 0 12 chr15 69409228 69409314 -16286440 + AluJo SINE Alu 57 141 -171 1951 130 0 19 chr15 69409314 69409630 -16286124 + AluJb SINE Alu 1 310 -2 260 179 95 0 chr15 69409630 69409725 -16286029 + (TTAAA)n Simple_repeat Simple_repeat 1 104 0 415 248 45 53 chr15 69409725 69409858 -16285896 - L1ME4a LINE L1 -278 5843 5712 2142 101 27 0 chr15 69410484 69410782 -16284972 - AluSx SINE Alu -6 306 1 1763 187 31 89 chr15 69411129 69411563 -16284191 - HsTC2 DNA Tc2 0 1898 1321 2313 79 0 7 chr15 69411563 69411868 -16283886 - AluSx SINE Alu -9 303 1 1763 187 31 89 chr15 69411868 69411952 -16283802 - HsTC2 DNA Tc2 -577 1321 1234 428 294 0 9 chr15 69411950 69412059 -16283695 - HsTC2 DNA Tc2 -1744 154 47 * 254 219 31 42 chr15 69412195 69412291 -16283463 - L1ME4a LINE L1 -399 5722 5628 1600 170 7 3 chr15 69412317 69412626 -16283128 - AluJb SINE Alu 0 310 1 417 81 0 0 chr15 69412677 69412739 -16283015 + (CA)n Simple_repeat Simple_repeat 1 62 0 281 346 60 30 chr15 69414047 69414281 -16281473 - MLT1J LTR MaLR -3 508 268 277 211 0 0 chr15 69414281 69414333 -16281421 + LTR30 LTR ERV1 1 52 -670 1046 115 0 110 chr15 69414337 69414542 -16281212 + LTR12 LTR ERV1 100 266 -448 212 154 0 0 chr15 69414542 69414581 -16281173 + C-rich Low_complexity Low_complexity 1 39 0 306 237 21 21 chr15 69414590 69414683 -16281071 + LTR30 LTR ERV1 551 643 -79 565 169 16 32 chr15 69414684 69414808 -16280946 + LTR12 LTR ERV1 481 602 -112 395 268 19 57 chr15 69414853 69415010 -16280744 - MLT1L LTR MaLR -328 287 137 1506 162 48 45 chr15 69415292 69415582 -16280172 + AluJo SINE Alu 1 291 -11 1020 131 92 79 chr15 69415585 69415771 -16279983 + L1MA8 LINE L1 5580 5771 -529 2101 134 0 3 chr15 69415771 69416084 -16279670 + AluSx SINE Alu 1 312 0 1020 131 92 79 chr15 69416084 69416126 -16279628 + L1MA8 LINE L1 5771 5811 -489 1841 165 0 3 chr15 69416126 69416526 -16279228 - AluJb SINE Alu 0 402 4 293 98 0 0 chr15 69416526 69416567 -16279187 + L1MA8 LINE L1 5806 5846 -488 2685 110 62 0 chr15 69416615 69417034 -16278720 + L1MA8 LINE L1 5847 6291 0 774 139 0 9 chr15 69417119 69417234 -16278520 + FLAM_A SINE Alu 8 121 -21 376 276 17 82 chr15 69417252 69417374 -16278380 + HAL1 LINE L1 1446 1574 -933 1941 116 0 0 chr15 69417374 69417649 -16278105 - AluSq SINE Alu 0 313 39 376 276 17 82 chr15 69417649 69417748 -16278006 + HAL1 LINE L1 1574 1646 -861 2392 63 3 0 chr15 69417748 69418049 -16277705 - AluSp SINE Alu -11 302 1 376 276 17 82 chr15 69418049 69418119 -16277635 + HAL1 LINE L1 1646 1719 -788 1174 208 148 91 chr15 69418132 69418569 -16277185 + MLT1E LTR MaLR 1 411 -182 1775 165 0 13 chr15 69418569 69418885 -16276869 - AluJb SINE Alu 0 312 1 1174 208 148 91 chr15 69418885 69418917 -16276837 + MLT1E LTR MaLR 411 440 -153 2178 111 0 0 chr15 69418917 69419223 -16276531 - AluSg SINE Alu -4 306 1 1174 208 148 91 chr15 69419223 69419257 -16276497 + MLT1E LTR MaLR 440 585 -8 1988 124 0 0 chr15 69419523 69419833 -16275921 - AluSx SINE Alu 0 310 1 281 314 105 0 chr15 69419912 69420036 -16275718 + HAL1 LINE L1 94 230 -2277 541 141 85 68 chr15 69420052 69420229 -16275525 + HAL1 LINE L1 1016 1195 -1312 2070 112 0 38 chr15 69420234 69420547 -16275207 + AluSx SINE Alu 1 301 -11 1120 144 12 0 chr15 69420547 69420720 -16275034 + AluSg/x SINE Alu 132 306 -4 268 250 9 60 chr15 69420721 69420837 -16274917 + HAL1 LINE L1 1205 1314 -1193 1274 143 15 68 chr15 69421106 69421371 -16274383 - AluJo SINE Alu -1 311 61 439 316 14 19 chr15 69421448 69421657 -16274097 - L1ME1 LINE L1 -222 5944 5737 * 752 228 23 97 chr15 69421643 69421851 -16273903 + HAL1 LINE L1 2189 2411 -96 2098 82 7 7 chr15 69421851 69422145 -16273609 + AluSx SINE Alu 2 295 -17 2042 130 7 0 chr15 69422147 69422454 -16273300 + AluSx SINE Alu 1 309 -3 752 228 23 97 chr15 69422454 69422584 -16273170 + HAL1 LINE L1 2412 2505 -2 1976 123 7 0 chr15 69422728 69423029 -16272725 + AluSx SINE Alu 1 303 -9 577 186 54 23 chr15 69423032 69423161 -16272593 + FLAM_A SINE Alu 1 133 0 1087 218 102 82 chr15 69423516 69424067 -16271687 - MER34B LTR ERV1 -2 563 2 485 205 0 0 chr15 69424363 69424446 -16271308 - L2 LINE L2 -2 3311 3229 1800 156 0 0 chr15 69424570 69424881 -16270873 + AluJb SINE Alu 1 311 0 8658 113 43 15 chr15 69424929 69425732 -16270022 - Tigger4(Zombi) DNA MER2_type -1 2730 1874 2122 108 0 3 chr15 69425732 69426029 -16269725 - AluSq SINE Alu -17 296 1 8658 113 43 15 chr15 69426029 69426557 -16269197 - Tigger4(Zombi) DNA MER2_type -857 1874 1362 819 67 9 0 chr15 69426574 69426679 -16269075 - AluSq/x SINE Alu -183 129 24 402 109 0 0 chr15 69426727 69426782 -16268972 - Tigger4(Zombi) DNA MER2_type -1357 1374 1320 1308 87 6 0 chr15 69426783 69426955 -16268799 - AluSq SINE Alu -140 173 1 347 148 0 0 chr15 69426957 69427011 -16268743 - Tigger4(Zombi) DNA MER2_type -2268 463 410 2129 81 41 14 chr15 69427012 69427172 -16268582 - AluSg1 SINE Alu -6 303 130 2420 48 0 3 chr15 69427172 69427467 -16268287 - AluY SINE Alu -17 294 1 2129 81 41 14 chr15 69427467 69427601 -16268153 - AluSg1 SINE Alu -179 130 1 309 183 135 58 chr15 69427668 69427772 -16267982 - L2 LINE L2 0 3313 3202 1032 124 7 7 chr15 69427779 69427932 -16267822 - AluSq SINE Alu -160 153 1 2394 164 35 2 chr15 69427953 69428355 -16267399 + Tigger4(Zombi) DNA MER2_type 5 419 -2312 862 115 0 8 chr15 69428358 69428488 -16267266 + FLAM_C SINE Alu 3 131 -12 2097 112 0 16 chr15 69428550 69428685 -16267069 + AluSx SINE Alu 3 139 -173 2100 115 0 3 chr15 69428685 69428990 -16266764 + AluSx SINE Alu 1 304 -8 2097 112 0 16 chr15 69428990 69429166 -16266588 + AluSx SINE Alu 139 309 -3 235 246 0 15 chr15 69429169 69429234 -16266520 + L1ME4a LINE L1 4263 4326 -1820 833 187 179 28 chr15 69429658 69429909 -16265845 + L1MC4 LINE L1 6450 6738 -1304 340 290 20 20 chr15 69430079 69430179 -16265575 + L1M4 LINE L1 3400 3499 -2647 1801 153 30 0 chr15 69430188 69430488 -16265266 + AluJb SINE Alu 1 309 -3 294 132 0 0 chr15 69430513 69430566 -16265188 + (CA)n Simple_repeat Simple_repeat 2 54 0 1043 184 58 11 chr15 69430577 69430854 -16264900 + L1M4 LINE L1 2992 3281 -2865 233 182 212 74 chr15 69430862 69431065 -16264689 - L1MC4a LINE L1 -1629 6179 5949 2363 139 11 19 chr15 69432066 69432433 -16263321 - THE1B LTR MaLR 0 364 1 806 108 0 0 chr15 69432435 69432546 -16263208 + AluSg/x SINE Alu 138 248 -64 1261 91 0 0 chr15 69432546 69432711 -16263043 - AluSc SINE Alu -142 167 3 731 254 135 0 chr15 69432931 69433175 -16262579 + L1ME4a LINE L1 5416 5692 -478 2081 133 0 13 chr15 69433175 69433491 -16262263 + AluJb SINE Alu 1 312 0 581 195 30 55 chr15 69433509 69433673 -16262081 + L1ME3A LINE L1 6011 6170 0 504 280 72 29 chr15 69433673 69433952 -16261802 + L1ME4a LINE L1 5830 6120 -1 315 335 22 51 chr15 69433959 69434275 -16261479 + L1M4 LINE L1 4769 5075 -1071 336 295 58 26 chr15 69434335 69434491 -16261263 + L1M4 LINE L1 4350 4510 -1636 1708 173 0 3 chr15 69435149 69435456 -16260298 + AluJo SINE Alu 1 306 -6 220 246 92 46 chr15 69435459 69435524 -16260230 + MIR SINE MIR 21 88 -174 792 183 0 69 chr15 69435524 69435699 -16260055 - FAM SINE Alu -1 48 1 292 251 135 104 chr15 69435710 69435873 -16259881 + MIR SINE MIR 94 261 -1 324 0 0 0 chr15 69435975 69436011 -16259743 + (TG)n Simple_repeat Simple_repeat 1 36 0 1265 144 40 58 chr15 69436016 69436293 -16259461 - AluSg SINE Alu -38 272 1 1025 108 119 31 chr15 69436817 69437011 -16258743 + MER2 DNA MER2_type 1 211 -134 24 32 0 0 chr15 69437012 69437043 -16258711 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 69437068 69437091 -16258663 + AT_rich Low_complexity Low_complexity 1 23 0 1459 173 8 4 chr15 69437112 69437372 -16258382 - AluJb SINE Alu -19 293 33 272 299 15 0 chr15 69437377 69437444 -16258310 + MER2 DNA MER2_type 277 344 -1 1535 136 21 42 chr15 69437582 69437908 -16257846 + AluSg SINE Alu 1 320 0 2001 140 0 0 chr15 69437918 69438218 -16257536 + AluSx SINE Alu 1 300 -12 2375 81 0 0 chr15 69438320 69438630 -16257124 + AluY SINE Alu 1 310 -1 337 237 178 37 chr15 69438632 69438767 -16256987 + L1ME4a LINE L1 5966 6119 -2 1738 159 38 0 chr15 69438771 69439060 -16256694 - AluJo SINE Alu -12 300 1 2277 87 3 0 chr15 69439231 69439529 -16256225 + AluSp SINE Alu 1 299 -14 2004 125 0 16 chr15 69439579 69439890 -16255864 + AluJo SINE Alu 1 306 -6 184 191 43 21 chr15 69440264 69440311 -16255443 + MIR SINE MIR 82 129 -79 513 222 183 26 chr15 69440916 69441069 -16254685 - MER5A DNA MER1_type -3 186 10 283 322 35 78 chr15 69441105 69441360 -16254394 - L3 LINE CR1 -13 1564 1321 1058 220 5 18 chr15 69441853 69442076 -16253678 + AluJo SINE Alu 1 220 -92 189 0 0 0 chr15 69442117 69442138 -16253616 + (CA)n Simple_repeat Simple_repeat 2 22 0 240 210 41 54 chr15 69442139 69442215 -16253539 + MER5A DNA MER1_type 64 134 -44 2048 86 62 10 chr15 69442284 69442575 -16253179 + AluSq SINE Alu 1 306 -7 515 141 33 11 chr15 69442595 69442709 -16253045 - AluSg/x SINE Alu 0 310 203 2293 92 36 3 chr15 69442916 69443219 -16252535 - AluSp SINE Alu 0 313 1 759 126 60 7 chr15 69443447 69443598 -16252156 + LTR23 LTR ERV1 147 305 -132 1996 125 3 21 chr15 69443599 69443913 -16251841 + AluSx SINE Alu 1 309 0 700 193 0 0 chr15 69443918 69444032 -16251722 + FLAM_C SINE Alu 13 126 -17 207 0 0 0 chr15 69444032 69444055 -16251699 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 217 264 19 0 chr15 69444513 69444566 -16251188 + CT-rich Low_complexity Low_complexity 3 56 0 207 204 0 0 chr15 69444623 69444667 -16251087 + CT-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr15 69444762 69444793 -16250961 + GC_rich Low_complexity Low_complexity 1 31 0 345 154 77 0 chr15 69445475 69445540 -16250214 + MIR SINE MIR 81 150 -112 423 253 60 6 chr15 69445801 69445967 -16249787 + L1MC4 LINE L1 7867 8041 -1 1979 137 22 0 chr15 69446214 69446492 -16249262 - AluSx SINE Alu -14 298 15 1100 152 22 5 chr15 69446567 69446751 -16249003 + AluSx SINE Alu 1 187 -125 263 212 62 62 chr15 69447627 69447740 -16248014 + L2 LINE L2 3198 3310 -3 806 158 0 8 chr15 69448036 69448162 -16247592 + AluJo/FLAM SINE Alu 1 127 -175 2252 109 3 3 chr15 69448162 69448466 -16247288 - AluSx SINE Alu -8 304 1 498 195 56 56 chr15 69448499 69448599 -16247155 - MIR SINE MIR -2 260 159 2452 100 3 0 chr15 69448599 69448909 -16246845 + AluSq SINE Alu 1 311 -2 498 195 56 56 chr15 69448909 69448982 -16246772 - MIR SINE MIR -102 160 88 221 276 130 65 chr15 69448933 69449056 -16246698 + MIR3 SINE MIR 10 140 -68 * 199 208 21 42 chr15 69449074 69449122 -16246632 - MIR SINE MIR -18 244 198 2582 42 3 10 chr15 69449286 69449592 -16246162 + AluY SINE Alu 1 304 -7 335 219 226 51 chr15 69449866 69450003 -16245751 + MER5A DNA MER1_type 26 186 -3 201 275 187 11 chr15 69450028 69450119 -16245635 - MIR SINE MIR -76 132 26 280 276 79 55 chr15 69450274 69450401 -16245353 - MER5A DNA MER1_type -36 153 24 2179 99 14 7 chr15 69450554 69450847 -16244907 - AluSx SINE Alu -17 295 1 569 194 0 37 chr15 69451048 69451182 -16244572 + AluSq/x SINE Alu 2 130 -182 649 190 0 17 chr15 69451338 69451454 -16244300 + FLAM_A SINE Alu 20 133 -9 367 242 58 25 chr15 69451563 69451683 -16244071 + MER5C DNA MER1_type 1 124 -200 281 219 55 14 chr15 69451797 69451870 -16243884 + MER5C DNA MER1_type 249 324 0 1086 172 0 0 chr15 69452079 69452253 -16243501 - FAM SINE Alu -1 174 1 265 272 83 79 chr15 69452319 69452450 -16243304 + MIR SINE MIR 8 143 -119 2139 115 14 0 chr15 69452450 69452762 -16242992 + AluSx SINE Alu 1 316 0 265 272 83 79 chr15 69452762 69452857 -16242897 + MIR SINE MIR 143 236 -26 423 0 0 0 chr15 69452959 69453006 -16242748 + (TG)n Simple_repeat Simple_repeat 2 48 0 568 241 51 19 chr15 69454312 69454470 -16241284 - MER45A DNA AcHobo 0 178 16 254 318 0 12 chr15 69454724 69454809 -16240945 + CT-rich Low_complexity Low_complexity 4 87 0 244 239 321 6 chr15 69455251 69455410 -16240344 + L2 LINE L2 2651 2859 -455 239 235 59 0 chr15 69455661 69455712 -16240042 + MER5B DNA MER1_type 2 55 -123 834 239 177 26 chr15 69456843 69457232 -16238522 - L1MC4 LINE L1 0 8042 7595 306 0 0 0 chr15 69457239 69457273 -16238481 + (TG)n Simple_repeat Simple_repeat 1 34 0 2108 80 28 3 chr15 69457529 69457816 -16237938 + AluSx SINE Alu 2 295 -17 1947 157 13 17 chr15 69458049 69458348 -16237406 - AluJb SINE Alu -14 298 1 23 0 0 0 chr15 69458378 69458401 -16237353 + AT_rich Low_complexity Low_complexity 1 23 0 313 345 36 22 chr15 69458443 69458582 -16237172 - L1M4 LINE L1 -3317 2829 2689 335 261 238 0 chr15 69458705 69458843 -16236911 - MIR SINE MIR -3 259 88 2344 62 6 52 chr15 69458932 69459257 -16236497 - AluSg SINE Alu 0 310 1 208 231 19 19 chr15 69459378 69459430 -16236324 + L2 LINE L2 3220 3271 -1 1104 148 56 15 chr15 69459592 69459788 -16235966 + AluJo SINE Alu 85 288 -24 2383 104 0 0 chr15 69459911 69460210 -16235544 - AluSg SINE Alu -11 299 1 2481 75 0 0 chr15 69460229 69460523 -16235231 - AluY SINE Alu -6 305 12 210 183 17 117 chr15 69460542 69460602 -16235152 - L2 LINE L2 -11 3261 3208 235 315 79 0 chr15 69460916 69461005 -16234749 + L2 LINE L2 3107 3202 -70 21 57 0 0 chr15 69461041 69461076 -16234678 + AT_rich Low_complexity Low_complexity 1 35 0 658 172 83 0 chr15 69461116 69461261 -16234493 + L1MA10 LINE L1 6163 6319 -15 21 0 0 0 chr15 69461309 69461330 -16234424 + AT_rich Low_complexity Low_complexity 1 21 0 983 199 0 0 chr15 69461347 69461587 -16234167 + FRAM SINE Alu 1 240 0 866 223 56 96 chr15 69461610 69461656 -16234098 - L1ME4a LINE L1 -69 6052 6006 2338 112 0 3 chr15 69461656 69461959 -16233795 - AluSx SINE Alu -10 302 1 866 223 56 96 chr15 69461959 69462445 -16233309 - L1ME4a LINE L1 -115 6006 5541 2152 109 6 31 chr15 69462817 69463137 -16232617 - AluSx SINE Alu 0 312 1 193 264 0 19 chr15 69463898 69463951 -16231803 - MIR SINE MIR -60 202 151 387 230 90 0 chr15 69464113 69464213 -16231541 + MIR SINE MIR 58 166 -96 281 212 84 32 chr15 69464248 69464379 -16231375 + L1ME LINE L1 5685 5822 -299 1793 161 3 27 chr15 69464386 69464685 -16231069 + AluJo SINE Alu 1 292 -20 2213 116 0 10 chr15 69464979 69465282 -16230472 + AluSx SINE Alu 1 300 -12 1661 133 11 55 chr15 69465971 69466242 -16229512 - AluJb SINE Alu -49 263 5 236 250 33 0 chr15 69466246 69466306 -16229448 + L1MC/D LINE L1 5785 5846 -1962 403 272 69 38 chr15 69466567 69466759 -16228995 - MIR3 SINE MIR -44 218 13 1549 150 92 0 chr15 69466782 69467055 -16228699 - AluJo SINE Alu -14 298 1 2387 107 3 0 chr15 69468493 69468802 -16226952 - AluSx SINE Alu -2 310 1 630 249 171 70 chr15 69469336 69469863 -16225891 - L1ME4a LINE L1 0 6121 5542 182 284 129 35 chr15 69471614 69471730 -16224024 + MIR SINE MIR 18 144 -118 374 325 186 13 chr15 69471888 69472119 -16223635 - L2 LINE L2 -1 3271 3001 2161 103 17 3 chr15 69472132 69472424 -16223330 + AluSx SINE Alu 1 296 -16 2471 89 0 0 chr15 69472424 69472727 -16223027 + AluSg SINE Alu 1 303 -7 203 256 146 43 chr15 69472757 69472921 -16222833 - L2 LINE L2 -416 2898 2718 468 307 126 43 chr15 69473321 69473552 -16222202 - MIR SINE MIR -6 256 7 952 201 0 0 chr15 69473865 69474039 -16221715 + FRAM SINE Alu 1 173 -3 1968 141 17 7 chr15 69474044 69474335 -16221419 + AluJb SINE Alu 1 294 -18 313 252 98 61 chr15 69475707 69475953 -16219801 - L1ME4a LINE L1 -7 6114 5860 381 292 71 55 chr15 69476147 69476575 -16219179 + L1M4 LINE L1 2848 3289 -2857 185 0 40 0 chr15 69476575 69476600 -16219154 + (CAA)n Simple_repeat Simple_repeat 2 27 0 381 292 71 55 chr15 69476600 69476733 -16219021 + L1M4 LINE L1 3289 3418 -2728 670 341 69 29 chr15 69477027 69477402 -16218352 + L1M4 LINE L1 3812 4201 -1945 1377 121 5 0 chr15 69477529 69477719 -16218035 - AluSg/x SINE Alu -2 308 118 279 0 0 0 chr15 69477902 69477933 -16217821 + (GA)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr15 69477954 69477985 -16217769 + GC_rich Low_complexity Low_complexity 1 31 0 2211 76 0 7 chr15 69478806 69479081 -16216673 - AluSg SINE Alu -16 294 22 184 203 153 0 chr15 69480391 69480450 -16215304 + L2 LINE L2 3205 3272 0 289 275 228 20 chr15 69480503 69480652 -16215102 - MIR3 SINE MIR -21 187 8 441 250 80 0 chr15 69481049 69481161 -16214593 + L2 LINE L2 3190 3310 -3 2512 65 0 13 chr15 69481366 69481674 -16214080 - AluSc SINE Alu -5 304 1 298 291 301 10 chr15 69481714 69481910 -16213844 - MIR SINE MIR 0 262 10 272 296 98 45 chr15 69482396 69482616 -16213138 - L2 LINE L2 -91 3222 2982 388 246 24 0 chr15 69482645 69482741 -16213013 + MER5A DNA MER1_type 4 102 -87 204 345 17 78 chr15 69482774 69482890 -16212864 + MIR SINE MIR 23 131 -77 387 245 0 26 chr15 69483502 69483649 -16212105 - MIR SINE MIR -15 247 29 315 311 11 11 chr15 69484272 69484362 -16211392 - L1MC4 LINE L1 -1339 6703 6614 * 399 214 60 17 chr15 69484285 69484403 -16211351 + L1MC4 LINE L1 1995 6983 -1339 1849 128 59 14 chr15 69484427 69484715 -16211039 + AluJo SINE Alu 1 301 -11 297 246 13 77 chr15 69486102 69486222 -16209532 - L1MEd LINE L1 -3904 2636 2539 1843 144 10 24 chr15 69486222 69486520 -16209234 - AluJb SINE Alu -18 294 1 297 246 13 77 chr15 69486520 69486602 -16209152 - L1MEd LINE L1 -4001 2539 2453 720 215 0 0 chr15 69486682 69486812 -16208942 - AluJo SINE Alu -17 295 166 2466 91 3 0 chr15 69486848 69487155 -16208599 - AluSx SINE Alu -4 308 1 1041 140 34 6 chr15 69487156 69487334 -16208420 - AluJo SINE Alu -129 183 1 352 268 59 13 chr15 69487692 69487845 -16207909 - HAL1 LINE L1 -844 1663 1504 2361 109 0 0 chr15 69487850 69488154 -16207600 + AluSc SINE Alu 1 304 -5 2090 79 97 0 chr15 69488216 69488495 -16207259 - AluY SINE Alu -5 306 1 314 168 84 65 chr15 69488572 69488679 -16207075 - L1MEd LINE L1 -5085 1445 1337 891 244 63 94 chr15 69488728 69489009 -16206745 - L1MEd LINE L1 -5158 1372 1115 2113 126 3 19 chr15 69489009 69489327 -16206427 - AluSq SINE Alu 0 313 1 891 244 63 94 chr15 69489327 69489599 -16206155 - L1MEd LINE L1 -5415 1115 836 296 345 104 50 chr15 69489607 69489964 -16205790 + L2 LINE L2 2897 3272 0 351 236 135 11 chr15 69490039 69490128 -16205626 + MIR3 SINE MIR 88 187 -21 774 204 0 0 chr15 69490322 69490454 -16205300 + FLAM_A SINE Alu 2 133 0 306 261 55 64 chr15 69490587 69490805 -16204949 + L1MC/D LINE L1 5088 5303 -843 2402 93 7 0 chr15 69490816 69491116 -16204638 - AluSp SINE Alu -11 302 1 301 253 176 0 chr15 69491132 69491223 -16204531 + L1MC/D LINE L1 5318 5424 -2384 722 292 65 14 chr15 69491241 69491518 -16204236 + L1MC/D LINE L1 5507 5797 -2011 372 68 0 17 chr15 69491518 69491577 -16204177 - Alu SINE Alu 0 302 245 1002 181 10 25 chr15 69491944 69492143 -16203611 - AluSx SINE Alu -116 196 1 1782 184 62 24 chr15 69492195 69492428 -16203326 + L1M3 LINE L1 2570 2793 -3353 2191 111 0 7 chr15 69492428 69492717 -16203037 + AluSg SINE Alu 1 287 -23 1782 184 62 24 chr15 69492717 69492935 -16202819 + L1M3 LINE L1 2793 3038 -3108 2227 119 0 22 chr15 69492935 69493254 -16202500 + AluSx SINE Alu 1 312 0 1925 157 23 7 chr15 69493282 69493581 -16202173 + AluSx SINE Alu 6 309 -3 694 168 17 17 chr15 69493620 69493793 -16201961 + GA-rich Low_complexity Low_complexity 2 174 0 226 135 0 0 chr15 69493794 69493831 -16201923 + (GGAGAA)n Simple_repeat Simple_repeat 5 41 0 1897 164 10 6 chr15 69493831 69494142 -16201612 + AluJb SINE Alu 1 312 0 698 185 0 44 chr15 69494145 69494280 -16201474 + FLAM_C SINE Alu 2 130 -3 879 213 17 27 chr15 69494281 69494582 -16201172 + L1M3 LINE L1 2996 3293 -2853 1426 135 127 12 chr15 69494582 69494855 -16200899 + AluJo SINE Alu 13 313 0 1868 188 42 48 chr15 69494867 69495240 -16200514 + L1M3 LINE L1 4905 5279 -889 1758 112 112 4 chr15 69495240 69495507 -16200247 + AluSg SINE Alu 1 296 -14 2242 98 0 3 chr15 69495508 69495823 -16199931 + AluSx SINE Alu 1 314 0 1868 188 42 48 chr15 69495823 69495981 -16199773 + L1M3 LINE L1 5278 5442 -726 2354 100 0 3 chr15 69495981 69496280 -16199474 + AluSq SINE Alu 1 298 -15 344 258 98 30 chr15 69496585 69496717 -16199037 - MIR SINE MIR -3 259 119 185 383 49 6 chr15 69496762 69496924 -16198830 - L2 LINE L2 -469 2845 2677 1773 128 0 8 chr15 69497476 69497725 -16198029 - AluSx SINE Alu -22 290 44 780 172 0 0 chr15 69497881 69498009 -16197745 + FLAM_C SINE Alu 4 131 -2 323 266 213 21 chr15 69498491 69498679 -16197075 - MIR SINE MIR 0 262 39 816 143 8 0 chr15 69498863 69498989 -16196765 + FLAM_C SINE Alu 1 127 -6 56 16 0 0 chr15 69498989 69499052 -16196702 + AT_rich Low_complexity Low_complexity 1 63 0 2211 102 0 33 chr15 69499139 69499472 -16196282 - AluSq SINE Alu 0 313 3 317 339 23 29 chr15 69499477 69499648 -16196106 - MIR SINE MIR -36 226 57 2243 131 0 3 chr15 69499710 69500024 -16195730 - AluSq SINE Alu 0 313 1 608 142 0 44 chr15 69500024 69500126 -16195628 - AluSg/x SINE Alu -9 303 205 2260 95 0 39 chr15 69500456 69500761 -16194993 - AluSx SINE Alu -15 297 5 367 311 50 25 chr15 69500791 69500952 -16194802 - MIR SINE MIR -78 184 20 569 231 130 28 chr15 69501104 69501320 -16194434 - MIR SINE MIR -12 250 13 380 208 9 57 chr15 69501762 69501868 -16193886 - MLT1K LTR MaLR -6 582 482 280 336 75 14 chr15 69502080 69502226 -16193528 - MLT1K LTR MaLR -396 192 38 2185 78 68 7 chr15 69502226 69502519 -16193235 + AluSq SINE Alu 1 311 -2 548 165 9 0 chr15 69502543 69502658 -16193096 + GA-rich Low_complexity Low_complexity 1 116 0 8718 35 77 16 chr15 69502959 69504051 -16191703 + SVA Other Other 1 1158 -228 240 35 0 0 chr15 69504051 69504080 -16191674 + (A)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr15 69504283 69504306 -16191448 + AT_rich Low_complexity Low_complexity 1 23 0 1857 111 12 87 chr15 69504633 69504792 -16190962 + AluSx SINE Alu 1 125 -187 2200 93 4 4 chr15 69504792 69505094 -16190660 + AluSq SINE Alu 7 308 0 1857 111 12 87 chr15 69505094 69505265 -16190489 + AluSx SINE Alu 125 307 -5 2061 101 72 0 chr15 69505430 69505708 -16190046 - AluSx SINE Alu -14 298 1 2274 122 10 0 chr15 69505805 69506108 -16189646 - AluSx SINE Alu -6 306 1 1459 137 0 0 chr15 69506229 69506434 -16189320 - AluSx SINE Alu -9 303 99 2621 101 0 8 chr15 69506434 69506812 -16188942 + THE1C LTR MaLR 1 375 0 717 119 0 0 chr15 69506813 69506914 -16188840 - AluSx SINE Alu -210 102 2 189 216 0 0 chr15 69506929 69506966 -16188788 - MIR SINE MIR -2 260 224 1501 94 8 157 chr15 69507416 69507687 -16188067 + LTR23 LTR ERV1 1 210 -227 2169 129 0 3 chr15 69507687 69507990 -16187764 - AluSx SINE Alu -1 311 10 1501 94 8 157 chr15 69507990 69508069 -16187685 + LTR23 LTR ERV1 210 299 -138 843 148 14 0 chr15 69508128 69508270 -16187484 + LTR23 LTR ERV1 293 436 -1 2171 115 3 0 chr15 69508682 69508978 -16186776 - AluSx SINE Alu -15 297 1 1324 129 49 122 chr15 69508978 69509247 -16186507 + MER110-int LTR ERV1 2700 2934 -3397 1337 185 99 34 chr15 69509247 69509539 -16186215 - AluJo SINE Alu -1 311 1 1324 129 49 122 chr15 69509539 69509655 -16186099 + MER110-int LTR ERV1 2934 3057 -3274 1001 163 7 0 chr15 69509655 69509949 -16185805 - FRAM SINE Alu 0 293 1 917 161 17 72 chr15 69509949 69510185 -16185569 + MER110-int LTR ERV1 3050 3272 -3059 390 276 0 0 chr15 69510236 69510323 -16185431 + MER110-int LTR ERV1 3264 3350 -2981 493 216 88 0 chr15 69510370 69510472 -16185282 + MER110-int LTR ERV1 3354 3464 -2867 719 224 39 51 chr15 69510573 69510689 -16185065 + MER110-int LTR ERV1 1742 1858 -3022 2006 166 7 0 chr15 69510689 69510996 -16184758 - AluJb SINE Alu -1 311 3 719 224 39 51 chr15 69510996 69511340 -16184414 + MER110-int LTR ERV1 1858 2204 -2676 2000 156 10 3 chr15 69511340 69511635 -16184119 - AluJo SINE Alu -10 302 6 719 224 39 51 chr15 69511635 69511678 -16184076 + MER110-int LTR ERV1 2204 2940 -1940 1642 142 68 27 chr15 69511801 69512097 -16183657 + AluJb SINE Alu 1 308 -4 266 250 0 0 chr15 69512109 69512169 -16183585 + MER110-int LTR ERV1 2418 2477 -2170 1858 153 17 3 chr15 69512738 69513033 -16182721 + AluJo SINE Alu 13 311 -1 211 239 0 0 chr15 69513157 69513203 -16182551 + T-rich Low_complexity Low_complexity 1 46 0 227 258 394 13 chr15 69513600 69513755 -16181999 - MIR SINE MIR -33 229 16 2270 118 6 10 chr15 69513869 69514182 -16181572 - AluSx SINE Alu 0 312 1 368 204 43 21 chr15 69514259 69514352 -16181402 + MIR SINE MIR 97 191 -71 585 298 21 11 chr15 69515421 69515609 -16180145 - MIR SINE MIR -17 245 56 305 267 47 0 chr15 69516861 69516947 -16178807 - MIR SINE MIR -70 192 103 2530 68 0 0 chr15 69517250 69517546 -16178208 + AluSx SINE Alu 5 300 -12 2226 118 3 0 chr15 69517641 69517938 -16177816 + AluSx SINE Alu 1 298 -14 252 192 59 32 chr15 69517963 69518058 -16177696 + MIR SINE MIR 47 140 -68 407 285 47 23 chr15 69518125 69518297 -16177457 - MIR3 SINE MIR -29 179 4 360 271 56 0 chr15 69518829 69518936 -16176818 + MIR SINE MIR 52 164 -98 2318 88 0 7 chr15 69518938 69519234 -16176520 + AluSx SINE Alu 1 294 -18 189 0 0 0 chr15 69519238 69519259 -16176495 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 196 219 0 0 chr15 69519288 69519329 -16176425 + L2 LINE L2 3223 3263 -9 1969 133 31 0 chr15 69519638 69519924 -16175830 - AluJb SINE Alu -12 300 6 205 268 54 0 chr15 69520827 69520883 -16174871 + MIR SINE MIR 116 174 -88 262 276 109 94 chr15 69521311 69521845 -16173909 - L2 LINE L2 -60 3253 2715 2257 103 3 7 chr15 69522125 69522417 -16173337 + AluSx SINE Alu 4 294 -18 2412 77 0 14 chr15 69522417 69522714 -16173040 + AluSp SINE Alu 1 293 -20 339 267 0 0 chr15 69522749 69522824 -16172930 + MIR3 SINE MIR 112 186 -22 1953 127 0 4 chr15 69523703 69523979 -16171775 + AluSx SINE Alu 1 275 -37 324 0 0 0 chr15 69523980 69524016 -16171738 + (TAA)n Simple_repeat Simple_repeat 2 37 0 415 291 10 10 chr15 69524023 69524126 -16171628 - MER5B DNA MER1_type -25 153 51 1872 170 30 40 chr15 69524935 69524983 -16170771 - MLT2C1 LTR ERVL 0 397 350 228 111 0 0 chr15 69524983 69525019 -16170735 + (TA)n Simple_repeat Simple_repeat 1 36 0 1872 170 30 40 chr15 69525019 69525371 -16170383 - MLT2C1 LTR ERVL -47 350 1 250 331 97 0 chr15 69525424 69525569 -16170185 - L2 LINE L2 -238 3034 2876 464 216 0 0 chr15 69525640 69525751 -16170003 + MIR SINE MIR 30 140 -68 1950 145 3 10 chr15 69526558 69526855 -16168899 + AluJo SINE Alu 1 295 -17 2217 117 0 7 chr15 69526859 69527167 -16168587 + AluSx SINE Alu 1 306 -6 1925 155 7 13 chr15 69527453 69527757 -16167997 - AluJb SINE Alu -10 302 1 244 250 0 33 chr15 69528097 69528157 -16167597 - MIR SINE MIR -113 149 92 202 378 0 0 chr15 69528383 69528481 -16167273 + C-rich Low_complexity Low_complexity 4 101 0 234 91 0 0 chr15 69528490 69528523 -16167231 + (TC)n Simple_repeat Simple_repeat 2 34 0 183 156 0 0 chr15 69529098 69529130 -16166624 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 303 56 0 chr15 69529891 69529980 -16165774 - MER94 DNA DNA -39 95 2 242 219 94 0 chr15 69530209 69530273 -16165481 - MIR SINE MIR -145 117 48 263 259 120 46 chr15 69530516 69530624 -16165130 + L2 LINE L2 3157 3272 0 2338 105 0 0 chr15 69530756 69531052 -16164702 - AluSx SINE Alu -12 300 5 305 297 117 7 chr15 69531097 69531242 -16164512 - MIR SINE MIR -48 214 54 677 256 30 0 chr15 69532027 69532191 -16163563 + AluJb SINE Alu 136 304 -8 2386 79 13 10 chr15 69532742 69533045 -16162709 - AluSq SINE Alu -9 304 1 209 283 65 33 chr15 69533099 69533191 -16162563 - MIR3 SINE MIR -52 156 62 1753 179 0 39 chr15 69535076 69535211 -16160543 + AluJb SINE Alu 1 140 -172 2450 102 0 0 chr15 69535211 69535516 -16160238 + AluSq SINE Alu 1 305 -8 1753 179 0 39 chr15 69535516 69535687 -16160067 + AluJb SINE Alu 140 295 -17 180 260 40 0 chr15 69535738 69535788 -16159966 - MIR SINE MIR -102 160 109 893 174 60 24 chr15 69536479 69536646 -16159108 + FAM SINE Alu 1 173 -2 1545 162 119 18 chr15 69536658 69536936 -16158818 + AluSx SINE Alu 1 306 -6 1182 139 6 0 chr15 69537222 69537388 -16158366 + AluJb SINE Alu 129 295 -17 355 274 44 9 chr15 69537388 69537501 -16158253 + MER117 DNA MER1_type 80 196 -1 2427 88 7 0 chr15 69537537 69537834 -16157920 + AluSq SINE Alu 1 299 -14 2386 104 10 0 chr15 69538223 69538530 -16157224 - AluSg SINE Alu 0 310 1 782 165 0 0 chr15 69538539 69538660 -16157094 - FLAM_C SINE Alu -12 121 1 285 322 26 26 chr15 69538845 69538997 -16156757 + MER5A DNA MER1_type 37 188 -1 335 237 62 0 chr15 69539198 69539295 -16156459 + L2 LINE L2 3170 3272 0 2334 119 0 3 chr15 69540263 69540574 -16155180 + AluSx SINE Alu 1 310 -2 613 209 163 17 chr15 69541176 69541348 -16154406 - MIR SINE MIR 0 262 66 1800 189 0 3 chr15 69541896 69542197 -16153557 + AluJo SINE Alu 1 300 -12 338 267 240 0 chr15 69542474 69542624 -16153130 + MER5A DNA MER1_type 4 189 0 842 161 18 18 chr15 69542634 69542802 -16152952 - MER5A DNA MER1_type -21 168 1 494 252 45 26 chr15 69542831 69542986 -16152768 - MER5B DNA MER1_type -15 163 6 305 82 14 178 chr15 69543082 69543110 -16152644 + U7 snRNA snRNA 2 12 -51 2250 98 0 20 chr15 69543110 69543416 -16152338 + AluSx SINE Alu 1 300 -12 305 82 14 178 chr15 69543416 69543460 -16152294 + U7 snRNA snRNA 12 62 -1 289 269 15 0 chr15 69544619 69544686 -16151068 - L2 LINE L2 0 3313 3246 220 359 38 0 chr15 69545875 69546006 -16149748 - L2 LINE L2 -235 3037 2902 325 339 6 41 chr15 69546999 69547170 -16148584 + GA-rich Low_complexity Low_complexity 4 168 0 195 100 0 0 chr15 69548416 69548446 -16147308 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 2325 87 6 0 chr15 69548742 69549053 -16146701 + AluSq SINE Alu 1 313 0 492 350 38 33 chr15 69549134 69549374 -16146380 - L2 LINE L2 -8 3264 3024 1572 193 36 16 chr15 69549447 69549753 -16146001 + AluJo SINE Alu 1 312 0 307 330 157 20 chr15 69549793 69549990 -16145764 + HAL1 LINE L1 1911 2134 -373 512 283 17 51 chr15 69550033 69550326 -16145428 + HAL1 LINE L1 2225 2507 0 2403 51 7 3 chr15 69551647 69551942 -16143812 - AluY SINE Alu -15 296 1 417 294 153 41 chr15 69552086 69552169 -16143585 - MLT1L LTR MaLR -7 608 536 928 171 59 0 chr15 69552169 69552321 -16143433 + FRAM SINE Alu 2 162 -4 2436 82 0 9 chr15 69552324 69552640 -16143114 + AluSp SINE Alu 1 313 0 417 294 153 41 chr15 69552640 69552961 -16142793 - MLT1L LTR MaLR -80 535 140 1277 119 90 0 chr15 69552961 69553162 -16142592 + MER20 DNA MER1_type 1 219 0 417 294 153 41 chr15 69553162 69553215 -16142539 - MLT1L LTR MaLR -475 140 94 336 221 0 47 chr15 69553538 69553624 -16142130 + MIR3 SINE MIR 81 162 -46 976 191 0 0 chr15 69557192 69557344 -16138410 - FRAM SINE Alu -14 152 1 2409 93 0 0 chr15 69557513 69557825 -16137929 - AluSx SINE Alu 0 312 1 209 241 81 46 chr15 69559886 69559973 -16135781 + L2 LINE L2 3137 3226 -46 1711 85 0 58 chr15 69560767 69561027 -16134727 - AluSq SINE Alu -3 310 66 2188 128 0 3 chr15 69611380 69611686 -16084068 - AluSx SINE Alu -7 305 1 2275 118 0 0 chr15 69611686 69611991 -16083763 - AluSx SINE Alu -6 306 1 2093 111 4 0 chr15 69612005 69612275 -16083479 - AluSx SINE Alu -41 271 1 859 197 0 0 chr15 69612283 69612430 -16083324 - AluJb SINE Alu -21 291 145 453 97 0 0 chr15 69612435 69612497 -16083257 + AluSp/q SINE Alu 229 290 -23 891 99 46 0 chr15 69612511 69612642 -16083112 + THE1C LTR MaLR 2 138 -237 26 50 0 0 chr15 69612850 69612890 -16082864 + AT_rich Low_complexity Low_complexity 1 40 0 2385 92 0 0 chr15 69612897 69613190 -16082564 + AluSg SINE Alu 1 293 -17 544 273 88 23 chr15 69613785 69614001 -16081753 - MIR SINE MIR 0 262 33 201 132 0 0 chr15 69614259 69614297 -16081457 + (CGGGG)n Simple_repeat Simple_repeat 1 38 0 1924 144 10 7 chr15 69615738 69616036 -16079718 + 7SLRNA srpRNA srpRNA 8 306 -14 255 317 0 0 chr15 69616053 69616135 -16079619 + L1MC/D LINE L1 5768 5849 -1959 1036 164 6 17 chr15 69616145 69616322 -16079432 + FRAM SINE Alu 1 172 -4 241 300 67 40 chr15 69617122 69617206 -16078548 + MER5A DNA MER1_type 33 124 -65 2343 99 0 34 chr15 69617206 69617529 -16078225 - AluSq SINE Alu -1 312 1 241 300 67 40 chr15 69617529 69617594 -16078160 + MER5A DNA MER1_type 124 186 -3 2327 88 24 0 chr15 69617782 69618078 -16077676 + AluSx SINE Alu 1 303 -9 1929 138 9 50 chr15 69620442 69620761 -16074993 + AluSx SINE Alu 3 308 -4 232 331 169 0 chr15 69620814 69620950 -16074804 + MIR SINE MIR 98 256 -6 1563 177 75 0 chr15 69622491 69622773 -16072981 - AluJb SINE Alu -9 303 1 747 203 21 52 chr15 69624485 69624677 -16071077 + L1MA9 LINE L1 6127 6312 0 2353 114 0 0 chr15 69624869 69625177 -16070577 - AluSg SINE Alu -2 308 1 752 228 84 58 chr15 69626045 69626404 -16069350 - LTR56 LTR ERV1 0 445 78 785 118 184 15 chr15 69626417 69626553 -16069201 - AluSg/x SINE Alu -20 290 132 981 76 0 56 chr15 69626553 69626697 -16069057 - AluSg/x SINE Alu -14 298 163 1312 56 6 6 chr15 69626868 69627047 -16068707 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 359 57 38 0 chr15 69627047 69627100 -16068654 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2010 149 7 0 chr15 69627208 69627516 -16068238 + AluSg SINE Alu 1 310 0 2300 114 13 0 chr15 69627570 69627878 -16067876 - AluSq SINE Alu -1 312 1 479 209 9 0 chr15 69627908 69628023 -16067731 + CT-rich Low_complexity Low_complexity 1 116 0 2101 128 0 7 chr15 69628023 69628312 -16067442 - AluSx SINE Alu -25 287 1 2530 90 0 0 chr15 69628323 69628633 -16067121 - AluSg SINE Alu 0 310 1 2669 40 0 3 chr15 69628641 69628943 -16066811 - AluY SINE Alu -10 301 1 1432 102 5 0 chr15 69629130 69629317 -16066437 + AluSp SINE Alu 116 303 -10 21 0 0 0 chr15 69629404 69629425 -16066329 + AT_rich Low_complexity Low_complexity 1 21 0 2374 89 0 3 chr15 69629728 69630021 -16065733 + AluSg SINE Alu 1 292 -18 310 250 53 130 chr15 69631971 69632179 -16063575 - MER91A DNA MER1_type -4 192 1 854 248 34 0 chr15 69632701 69632907 -16062847 - MIR SINE MIR -10 252 40 215 307 136 29 chr15 69633171 69633311 -16062443 - MIR SINE MIR -86 176 22 444 232 17 44 chr15 69634304 69634485 -16061269 + C-rich Low_complexity Low_complexity 5 180 0 2306 91 7 0 chr15 69634717 69635004 -16060750 - AluY SINE Alu -22 289 1 1890 134 47 30 chr15 69635266 69635565 -16060189 + AluJb SINE Alu 1 304 -8 1112 185 5 0 chr15 69635693 69635877 -16059877 - AluSg/x SINE Alu -17 293 109 1954 121 70 65 chr15 69635879 69636276 -16059478 - LTR18B LTR ERVL 0 614 216 2291 131 0 0 chr15 69636307 69636612 -16059142 + AluSg SINE Alu 1 305 -5 642 263 153 0 chr15 69636798 69637007 -16058747 - MIR SINE MIR -6 256 16 997 161 12 0 chr15 69637252 69637413 -16058341 - FRAM SINE Alu -16 160 1 2336 99 0 3 chr15 69637528 69637820 -16057934 - AluSx SINE Alu -21 291 1 506 234 119 50 chr15 69637870 69638071 -16057683 + MIR SINE MIR 1 215 -47 267 163 20 0 chr15 69638079 69638128 -16057626 + Charlie5 DNA MER1_type 9 58 -2554 718 109 159 22 chr15 69638128 69638266 -16057488 + AluSg/x SINE Alu 153 309 0 327 100 20 0 chr15 69638300 69638350 -16057404 + AluJ/FLAM SINE Alu 7 57 -245 2135 133 0 35 chr15 69638350 69638667 -16057087 + AluJb SINE Alu 1 306 -6 251 196 18 0 chr15 69638670 69638726 -16057028 + Charlie5 DNA MER1_type 2372 2428 -184 1998 147 10 10 chr15 69638726 69639025 -16056729 + AluJb SINE Alu 1 299 -13 601 120 0 0 chr15 69639083 69639175 -16056579 - AluSg/x SINE Alu -10 299 208 1888 131 0 0 chr15 69639175 69639434 -16056320 - AluSx SINE Alu -53 259 1 280 146 0 79 chr15 69639434 69639523 -16056231 + Charlie5 DNA MER1_type 2466 2547 -65 2498 66 3 10 chr15 69639576 69639878 -16055876 + AluSp SINE Alu 1 300 -13 275 128 0 21 chr15 69639894 69639941 -16055813 + Charlie5 DNA MER1_type 2579 2624 0 261 138 0 35 chr15 69640037 69640095 -16055659 - Alu SINE Alu 0 302 247 451 231 56 35 chr15 69640345 69640488 -16055266 - MIR3 SINE MIR -17 191 46 2263 123 0 0 chr15 69640508 69640817 -16054937 - AluSx SINE Alu -3 309 1 2141 128 10 10 chr15 69640921 69641234 -16054520 + AluSq SINE Alu 1 313 0 2510 72 13 0 chr15 69641239 69641546 -16054208 + AluY SINE Alu 1 311 0 281 328 17 8 chr15 69641968 69642087 -16053667 - L2 LINE L2 -15 3257 3138 2464 107 0 0 chr15 69642308 69642616 -16053138 + AluSg SINE Alu 1 308 -2 1979 148 0 16 chr15 69642620 69642925 -16052829 + AluJb SINE Alu 1 300 -12 2283 106 3 0 chr15 69642929 69643230 -16052524 + AluSx SINE Alu 1 302 -10 2319 110 7 7 chr15 69643350 69643660 -16052094 - AluSg SINE Alu 0 310 1 1044 79 0 43 chr15 69643660 69643799 -16051955 - AluSq/x SINE Alu -180 133 1 2280 122 0 3 chr15 69643938 69644249 -16051505 + AluSg SINE Alu 1 310 0 2068 106 46 0 chr15 69644258 69644542 -16051212 + AluSp SINE Alu 1 297 -16 1857 171 3 10 chr15 69645439 69645744 -16050010 + AluJo SINE Alu 1 303 -9 1813 128 12 0 chr15 69645746 69646003 -16049751 + AluSq SINE Alu 1 260 -53 254 136 23 23 chr15 69647288 69647376 -16048378 + (TG)n Simple_repeat Simple_repeat 2 89 0 1034 186 42 16 chr15 69647376 69647569 -16048185 - AluJb SINE Alu -34 278 81 332 298 188 14 chr15 69648021 69648229 -16047525 - MIR SINE MIR -15 247 4 2384 93 0 3 chr15 69649155 69649457 -16046297 - AluSg SINE Alu -9 301 1 1937 153 7 0 chr15 69651072 69651360 -16044394 - AluJo SINE Alu -14 298 9 1506 116 174 23 chr15 69651375 69651633 -16044121 - AluSx SINE Alu -5 297 1 234 91 0 0 chr15 69651664 69651697 -16044057 + (TA)n Simple_repeat Simple_repeat 1 33 0 313 265 29 69 chr15 69651817 69652025 -16043729 + L1MC/D LINE L1 5641 5841 -295 198 0 0 0 chr15 69652025 69652047 -16043707 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1841 88 104 19 chr15 69652052 69652312 -16043442 - AluSx SINE Alu -30 282 1 1126 142 58 5 chr15 69652341 69652546 -16043208 - MER39B LTR ERV1 0 653 438 2382 101 0 7 chr15 69652546 69652853 -16042901 + AluSx SINE Alu 1 305 -7 528 135 29 0 chr15 69652853 69652957 -16042797 + L1M1 LINE L1 5359 5465 -835 1445 119 0 0 chr15 69652966 69653195 -16042559 + AluSg/x SINE Alu 96 324 0 253 116 23 0 chr15 69653205 69653248 -16042506 - MER39B LTR ERV1 -214 439 396 1039 273 45 32 chr15 69653444 69653847 -16041907 - MLT1I LTR MaLR 0 409 2 865 141 110 12 chr15 69653924 69654087 -16041667 - Tigger1 DNA MER2_type -1 2417 2239 1252 124 0 0 chr15 69654087 69654256 -16041498 + AluSg/x SINE Alu 125 293 -17 1924 165 3 16 chr15 69654265 69654581 -16041173 - AluJb SINE Alu 0 312 1 2819 158 63 58 chr15 69654581 69654932 -16040822 - Tigger1 DNA MER2_type -1765 653 296 2198 117 13 0 chr15 69654932 69655232 -16040522 + AluSx SINE Alu 1 304 -8 2819 158 63 58 chr15 69655232 69655530 -16040224 - Tigger1 DNA MER2_type -2122 296 1 2169 147 0 0 chr15 69655581 69655887 -16039867 + AluSx SINE Alu 1 306 -6 244 121 0 69 chr15 69655891 69655949 -16039805 + FAM SINE Alu 126 179 0 2279 113 0 0 chr15 69655950 69656243 -16039511 + AluSq SINE Alu 1 293 -20 1360 141 0 0 chr15 69656256 69656448 -16039306 + AluSg/x SINE Alu 118 309 -1 587 191 130 0 chr15 69656460 69656591 -16039163 + AluJb SINE Alu 133 280 -32 1114 24 16 0 chr15 69656591 69656716 -16039038 + AluY SINE Alu 1 127 -184 1188 156 126 0 chr15 69656916 69657115 -16038639 + 7SLRNA srpRNA srpRNA 95 318 -2 22 35 0 0 chr15 69659890 69659919 -16035835 + AT_rich Low_complexity Low_complexity 1 29 0 267 146 0 0 chr15 69662577 69662632 -16033122 + (TA)n Simple_repeat Simple_repeat 2 56 0 220 100 12 50 chr15 69662648 69662728 -16033026 + (TTA)n Simple_repeat Simple_repeat 3 79 0 204 164 0 60 chr15 69662735 69662802 -16032952 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 230 180 16 0 chr15 69662854 69662915 -16032839 + (TA)n Simple_repeat Simple_repeat 2 63 0 366 262 152 6 chr15 69663421 69663585 -16032169 + MER112 DNA MER1_type 67 254 -6 261 338 27 27 chr15 69664018 69664162 -16031592 + MIR SINE MIR 9 151 -63 469 219 77 31 chr15 69664181 69664377 -16031377 - THE1C LTR MaLR -98 277 73 1697 135 8 0 chr15 69664382 69664626 -16031128 - AluSx SINE Alu -66 246 1 3168 162 5 0 chr15 69664626 69665323 -16030431 - L1M1 LINE L1 -743 5403 4786 826 98 8 0 chr15 69665423 69665545 -16030209 + THE1C LTR MaLR 250 372 -3 315 0 0 0 chr15 69665545 69665580 -16030174 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 289 66 57 chr15 69665700 69665911 -16029843 - L1ME4a LINE L1 -293 5828 5616 209 32 0 32 chr15 69665927 69665958 -16029796 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 263 204 19 19 chr15 69665960 69666014 -16029740 - FLAM SINE Alu -14 119 66 579 174 52 0 chr15 69666460 69666575 -16029179 + L1MB2 LINE L1 6015 6135 -36 2255 113 0 0 chr15 69666575 69666868 -16028886 - AluSx SINE Alu -19 293 1 514 226 10 0 chr15 69666981 69667083 -16028671 - AluSc SINE Alu -76 233 131 472 158 73 78 chr15 69667126 69667295 -16028459 + L1M3 LINE L1 5272 5441 -737 2250 103 0 40 chr15 69667296 69667617 -16028137 + AluSc SINE Alu 1 308 -1 2366 98 0 7 chr15 69667629 69667934 -16027820 + AluSg SINE Alu 3 305 -5 2393 80 0 3 chr15 69667965 69668264 -16027490 - AluY SINE Alu -13 298 1 2276 102 7 0 chr15 69668440 69668733 -16027021 - AluSp SINE Alu -18 295 1 1920 119 0 15 chr15 69668935 69669203 -16026551 - AluSc SINE Alu -16 293 30 720 139 147 8 chr15 69669426 69669555 -16026199 - FRAM SINE Alu -19 147 1 929 94 0 0 chr15 69669584 69669701 -16026053 - AluSg/x SINE Alu -8 302 186 875 83 9 0 chr15 69669701 69669810 -16025944 - AluSc SINE Alu -194 115 6 742 163 7 7 chr15 69670018 69670153 -16025601 + AluJ SINE Alu 2 136 -176 1055 180 0 37 chr15 69670194 69670383 -16025371 + AluJ SINE Alu 131 312 0 541 191 46 53 chr15 69670516 69670647 -16025107 + FLAM_A SINE Alu 13 142 0 21 0 0 0 chr15 69670647 69670668 -16025086 + AT_rich Low_complexity Low_complexity 1 21 0 1809 152 0 0 chr15 69670677 69670953 -16024801 + AluJb SINE Alu 1 276 -36 384 222 222 28 chr15 69670978 69671122 -16024632 + L1ME4a LINE L1 5610 5781 -340 183 42 0 0 chr15 69671224 69671248 -16024506 + (A)n Simple_repeat Simple_repeat 1 24 0 227 178 44 111 chr15 69671328 69671417 -16024337 + L1ME4a LINE L1 5975 6054 -67 1904 174 0 7 chr15 69671417 69671721 -16024033 - AluJb SINE Alu 0 312 11 227 178 44 111 chr15 69671721 69671766 -16023988 + L1ME4a LINE L1 6054 6100 -21 1673 177 3 20 chr15 69671808 69672107 -16023647 - AluJb SINE Alu -18 294 1 184 111 0 0 chr15 69672207 69672234 -16023520 + MIR SINE MIR 83 109 -99 307 270 24 0 chr15 69672241 69672337 -16023417 - MIR SINE MIR -62 146 57 2283 70 29 41 chr15 69672372 69672687 -16023067 - AluSq SINE Alu 0 313 3 2402 78 0 0 chr15 69672692 69672986 -16022768 - AluSx SINE Alu -18 294 1 194 206 0 0 chr15 69672987 69673021 -16022733 - MIR SINE MIR -138 70 37 2182 101 0 0 chr15 69673612 69673889 -16021865 - AluSc SINE Alu -32 277 1 209 254 0 0 chr15 69674019 69674074 -16021680 + G-rich Low_complexity Low_complexity 5 59 0 1202 105 0 22 chr15 69674552 69674733 -16021021 + FRAM SINE Alu 1 169 -7 1922 107 0 4 chr15 69675434 69675722 -16020032 - AluSx SINE Alu 0 312 30 2472 34 10 3 chr15 69676608 69676899 -16018855 - AluY SINE Alu -13 298 6 784 193 29 0 chr15 69676928 69677068 -16018686 + AluJo SINE Alu 2 145 -167 2318 75 0 3 chr15 69677727 69678045 -16017709 + AluSq SINE Alu 2 318 0 906 146 7 7 chr15 69678364 69678501 -16017253 + AluJo SINE Alu 120 256 -56 2100 127 0 13 chr15 69679032 69679331 -16016423 + AluJb SINE Alu 9 303 -9 196 392 25 13 chr15 69680023 69680102 -16015652 + MIR SINE MIR 20 99 -109 205 194 0 0 chr15 69680280 69680316 -16015438 + MIR SINE MIR 157 192 -70 308 212 141 12 chr15 69681273 69681358 -16014396 - L1ME4a LINE L1 -6 6115 6020 486 255 142 45 chr15 69681522 69681619 -16014135 - L1ME4a LINE L1 -223 5898 5812 231 36 0 0 chr15 69681619 69681647 -16014107 + (CACAT)n Simple_repeat Simple_repeat 5 32 0 486 255 142 45 chr15 69681647 69681841 -16013913 - L1ME4a LINE L1 -309 5812 5565 2664 52 0 0 chr15 69681841 69682149 -16013605 - AluY SINE Alu -3 308 1 486 255 142 45 chr15 69682149 69682209 -16013545 - L1ME4a LINE L1 -556 5565 5512 358 249 146 30 chr15 69682494 69682659 -16013095 + MIR3 SINE MIR 3 186 -22 261 294 108 29 chr15 69682793 69682895 -16012859 + MIR SINE MIR 106 215 -47 1951 148 3 0 chr15 69682914 69683229 -16012525 + AluSx SINE Alu 1 316 0 247 192 27 27 chr15 69683557 69683630 -16012124 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2184 113 0 10 chr15 69684138 69684439 -16011315 + AluSg SINE Alu 1 298 -12 569 298 111 20 chr15 69684818 69685016 -16010738 - MIR SINE MIR -46 216 1 1041 158 4 10 chr15 69686726 69687057 -16008697 - AluJb SINE Alu -4 308 14 2257 108 6 13 chr15 69687078 69687392 -16008362 - AluSx SINE Alu 0 312 1 1482 178 0 0 chr15 69688035 69688265 -16007489 - AluJo SINE Alu -55 257 28 1899 141 47 3 chr15 69688286 69688585 -16007169 - AluJo SINE Alu 0 312 1 733 167 24 0 chr15 69688589 69688715 -16007039 - AluSg/x SINE Alu -12 297 169 2136 104 24 0 chr15 69689189 69689476 -16006278 + AluSx SINE Alu 1 294 -18 2430 86 7 0 chr15 69689840 69690141 -16005613 + AluSg SINE Alu 1 303 -7 2368 95 3 0 chr15 69690637 69690942 -16004812 + AluSx SINE Alu 1 306 -6 209 326 95 68 chr15 69690958 69691148 -16004606 - L2 LINE L2 -502 2812 2618 2400 102 0 9 chr15 69691149 69691464 -16004290 + AluSx SINE Alu 1 312 0 282 29 0 0 chr15 69692192 69692227 -16003527 + (TG)n Simple_repeat Simple_repeat 2 36 0 474 133 20 41 chr15 69692624 69692722 -16003032 + AluS SINE Alu 1 96 -217 1658 140 12 67 chr15 69692753 69692971 -16002783 - MLT1B LTR MaLR -6 384 188 2175 106 10 0 chr15 69692971 69693263 -16002491 - AluSq SINE Alu -18 295 1 1658 140 12 67 chr15 69693263 69693373 -16002381 - MLT1B LTR MaLR -202 188 74 1719 178 9 29 chr15 69693542 69693857 -16001897 - AluJo SINE Alu -3 309 1 23 33 0 0 chr15 69694162 69694192 -16001562 + AT_rich Low_complexity Low_complexity 1 30 0 2347 102 0 3 chr15 69694263 69694568 -16001186 + AluSg SINE Alu 1 304 -6 233 287 15 29 chr15 69694609 69694745 -16001009 + L1ME4a LINE L1 5988 6121 0 316 329 280 11 chr15 69695035 69695513 -16000241 + L3 LINE CR1 16 622 -955 1261 213 7 36 chr15 69695513 69695646 -16000108 - AluJb SINE Alu -41 271 149 2454 74 0 3 chr15 69695646 69695943 -15999811 - AluY SINE Alu -15 296 1 1261 213 7 36 chr15 69695943 69696086 -15999668 - AluJb SINE Alu -163 149 3 759 178 31 0 chr15 69696090 69696243 -15999511 - FLAM_C SINE Alu 0 157 1 2256 99 7 13 chr15 69697962 69698266 -15997488 - AluSx SINE Alu -10 302 1 302 328 17 8 chr15 69698474 69698593 -15997161 + L2 LINE L2 3138 3257 -15 2356 83 3 7 chr15 69699770 69700071 -15995683 + AluSp SINE Alu 1 300 -13 797 206 35 4 chr15 69700234 69700448 -15995306 + L1MB7 LINE L1 5771 5990 -221 32 26 0 0 chr15 69700497 69700536 -15995218 + AT_rich Low_complexity Low_complexity 1 39 0 2459 99 0 0 chr15 69700572 69700875 -15994879 + AluSg SINE Alu 1 303 -7 322 270 173 44 chr15 69701167 69701469 -15994285 - L1ME LINE L1 -464 5657 5317 1708 169 7 4 chr15 69701578 69701851 -15993903 - AluJo SINE Alu -38 274 1 800 213 7 7 chr15 69702595 69702750 -15993004 - MER5A DNA MER1_type -33 156 2 2310 119 0 0 chr15 69703074 69703384 -15992370 - AluSx SINE Alu -2 310 1 227 218 0 18 chr15 69703699 69703754 -15992000 + (CATA)n Simple_repeat Simple_repeat 2 55 0 297 238 0 38 chr15 69704023 69704128 -15991626 + C-rich Low_complexity Low_complexity 1 101 0 304 332 0 0 chr15 69704155 69704390 -15991364 + C-rich Low_complexity Low_complexity 1 235 0 2364 102 0 13 chr15 69704865 69705035 -15990719 - AluSg SINE Alu -9 301 135 2622 65 0 7 chr15 69705035 69705345 -15990409 - AluY SINE Alu -3 308 1 2364 102 0 13 chr15 69705345 69705479 -15990275 - AluSg SINE Alu -175 135 1 928 123 7 27 chr15 69705481 69705627 -15990127 - FLAM_C SINE Alu 0 143 1 12296 183 18 5 chr15 69705993 69706842 -15988912 + L1 LINE L1 2195 3032 -3114 2483 73 7 0 chr15 69706842 69707144 -15988610 + AluSp SINE Alu 1 304 -9 12296 183 18 5 chr15 69707144 69708335 -15987419 + L1 LINE L1 3032 4276 -1870 369 0 0 0 chr15 69708335 69708376 -15987378 + (CA)n Simple_repeat Simple_repeat 2 42 0 12296 183 18 5 chr15 69708376 69708887 -15986867 + L1 LINE L1 4276 4779 -1367 332 240 173 19 chr15 69709012 69709116 -15986638 + L1ME4a LINE L1 5991 6110 -11 1798 112 12 0 chr15 69709175 69709417 -15986337 - AluSx SINE Alu -19 293 49 1979 140 7 0 chr15 69709418 69709703 -15986051 + AluSx SINE Alu 8 294 -18 2012 135 0 10 chr15 69709718 69710006 -15985748 + AluSx SINE Alu 17 301 -11 2173 123 7 0 chr15 69710016 69710309 -15985445 + AluSx SINE Alu 1 295 -17 289 214 214 29 chr15 69710313 69710416 -15985338 - MER5B DNA MER1_type -55 123 2 1830 157 0 14 chr15 69710783 69711084 -15984670 - AluJo SINE Alu 0 301 5 1032 103 0 85 chr15 69711372 69711565 -15984189 - AluSg/x SINE Alu 0 312 134 223 294 127 42 chr15 69711599 69711953 -15983801 - L2 LINE L2 -2237 1077 694 2187 113 3 10 chr15 69712245 69712546 -15983208 + AluSq SINE Alu 14 312 -1 1740 171 21 6 chr15 69712547 69712887 -15982867 + L1MD2 LINE L1 5433 5777 -582 870 199 44 98 chr15 69712890 69713207 -15982547 + AluJo SINE Alu 2 301 -1 1234 236 99 43 chr15 69713213 69713657 -15982097 + L1MD2 LINE L1 5878 6346 -13 2321 87 0 19 chr15 69713661 69713972 -15981782 + AluSc SINE Alu 1 305 -4 217 163 0 41 chr15 69714331 69714380 -15981374 + GA-rich Low_complexity Low_complexity 1 47 0 24 67 0 0 chr15 69714540 69714585 -15981169 + AT_rich Low_complexity Low_complexity 1 45 0 435 200 127 73 chr15 69714871 69715040 -15980714 + L1ME4a LINE L1 5653 5837 -284 1866 94 0 125 chr15 69715040 69715404 -15980350 - AluSg SINE Alu 0 325 2 435 200 127 73 chr15 69715404 69715438 -15980316 + L1ME4a LINE L1 5837 5868 -253 656 93 12 0 chr15 69715439 69715525 -15980229 + AluS SINE Alu 2 88 -224 1095 101 6 11 chr15 69715660 69715839 -15979915 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 205 238 24 0 chr15 69716538 69716580 -15979174 - L2 LINE L2 -11 3261 3219 207 0 0 0 chr15 69716622 69716645 -15979109 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1791 137 33 4 chr15 69716646 69716916 -15978838 - AluSx SINE Alu -33 279 2 225 336 43 21 chr15 69716931 69717071 -15978683 + L2 LINE L2 2918 3060 -212 379 304 29 0 chr15 69717073 69717175 -15978579 + L2 LINE L2 3166 3270 -2 251 266 145 65 chr15 69717328 69717542 -15978212 - MLT1K LTR MaLR -63 525 295 1957 132 10 42 chr15 69717565 69717876 -15977878 - AluJo SINE Alu -11 301 1 2144 120 0 43 chr15 69717878 69718204 -15977550 - AluSx SINE Alu 0 312 1 338 238 93 66 chr15 69718566 69718717 -15977037 - MIR SINE MIR -85 177 23 224 247 247 0 chr15 69718782 69718855 -15976899 - MIR SINE MIR -152 110 20 476 250 10 0 chr15 69718862 69718966 -15976788 + MIR SINE MIR 96 200 -62 254 316 59 32 chr15 69719462 69719649 -15976105 + MIR3 SINE MIR 1 192 -16 2198 111 14 0 chr15 69719687 69719976 -15975778 - AluSx SINE Alu -19 293 1 763 250 102 62 chr15 69719993 69720368 -15975386 + L2 LINE L2 2676 3158 -155 2251 110 0 7 chr15 69720368 69720668 -15975086 - AluSg SINE Alu -6 304 7 763 250 102 62 chr15 69720668 69720805 -15974949 + L2 LINE L2 3158 3288 -25 410 298 11 68 chr15 69720951 69721142 -15974612 - MIR SINE MIR -50 212 33 316 218 119 30 chr15 69721472 69721573 -15974181 - MIR3 SINE MIR -85 123 14 2415 92 0 10 chr15 69721694 69721998 -15973756 + AluSx SINE Alu 1 301 -11 2070 153 3 0 chr15 69722013 69722313 -15973441 + AluJb SINE Alu 1 301 -11 1043 167 0 0 chr15 69722324 69722486 -15973268 + AluJb SINE Alu 145 306 -6 363 264 84 7 chr15 69722637 69722792 -15972962 + L1ME4a LINE L1 5947 6113 -8 2182 137 0 7 chr15 69722794 69723101 -15972653 - AluSq SINE Alu -8 305 1 861 239 0 0 chr15 69723151 69723314 -15972440 + FAM SINE Alu 1 163 -12 2130 137 3 0 chr15 69723633 69723933 -15971821 - AluSx SINE Alu -11 301 1 589 261 62 24 chr15 69724282 69724493 -15971261 + MIR SINE MIR 13 231 -31 259 282 76 37 chr15 69726372 69726505 -15969249 - MIR SINE MIR -62 146 12 672 247 55 50 chr15 69726738 69726829 -15968925 + Charlie8 DNA MER1_type 1 90 -251 2372 104 0 3 chr15 69726829 69727136 -15968618 + AluSq SINE Alu 1 306 -7 672 247 55 50 chr15 69727136 69727263 -15968491 + Charlie8 DNA MER1_type 90 220 -121 218 364 0 26 chr15 69727455 69727532 -15968222 - MIR SINE MIR -107 101 27 1597 140 21 0 chr15 69727594 69727829 -15967925 - AluJb SINE Alu -1 311 72 214 345 118 8 chr15 69727998 69728117 -15967637 - L2 LINE L2 0 3272 3141 2076 95 9 63 chr15 69728127 69728443 -15967311 + AluSx SINE Alu 1 299 -13 337 299 123 7 chr15 69728542 69728696 -15967058 - L2 LINE L2 -183 3089 2918 343 316 164 13 chr15 69728783 69729014 -15966740 - L2 LINE L2 -555 2759 2494 235 167 74 0 chr15 69729450 69729504 -15966250 + MIR SINE MIR 175 232 -30 216 0 0 0 chr15 69731499 69731523 -15964231 + (CA)n Simple_repeat Simple_repeat 2 25 0 682 241 17 23 chr15 69731981 69732155 -15963599 - MIR SINE MIR -56 206 34 2166 87 56 7 chr15 69732917 69733204 -15962550 + AluSq SINE Alu 1 301 -12 2439 77 17 0 chr15 69733214 69733512 -15962242 + AluSp SINE Alu 2 304 -9 335 312 139 37 chr15 69734134 69734349 -15961405 - L1ME4a LINE L1 -45 6076 5840 2237 119 0 0 chr15 69734389 69734684 -15961070 + AluSx SINE Alu 3 297 -15 323 284 50 108 chr15 69734684 69734845 -15960909 - HAL1 LINE L1 -5 2502 2356 2155 86 75 0 chr15 69734845 69735125 -15960629 - AluSp SINE Alu -12 301 1 323 284 50 108 chr15 69735125 69735185 -15960569 - HAL1 LINE L1 -151 2356 2294 2119 96 0 0 chr15 69735456 69735716 -15960038 + AluSx SINE Alu 38 297 -15 372 269 21 43 chr15 69735932 69736109 -15959645 - L1ME4a LINE L1 -288 5833 5662 630 289 40 15 chr15 69736786 69736987 -15958767 + MIR SINE MIR 9 214 -48 230 313 24 12 chr15 69737278 69737361 -15958393 - L2 LINE L2 0 3272 3189 2009 100 0 94 chr15 69737363 69737683 -15958071 + AluSg SINE Alu 1 290 -20 304 281 31 10 chr15 69737724 69737820 -15957934 - L2 LINE L2 -250 3063 2966 1150 236 188 18 chr15 69737820 69738277 -15957477 - L2 LINE L2 -529 2785 2251 207 296 70 87 chr15 69739121 69739213 -15956541 + MIR SINE MIR 14 103 -159 2620 48 0 6 chr15 69739213 69739525 -15956229 - AluY SINE Alu -1 310 1 207 296 70 87 chr15 69739525 69739604 -15956150 + MIR SINE MIR 103 182 -80 207 295 16 16 chr15 69740198 69740259 -15955495 - L2 LINE L2 0 3313 3253 689 266 58 54 chr15 69740271 69740342 -15955412 + L3 LINE CR1 394 463 -1114 2100 113 3 35 chr15 69740342 69740653 -15955101 - AluSq SINE Alu -12 301 1 689 266 58 54 chr15 69740653 69740750 -15955004 + L3 LINE CR1 463 566 -1011 2339 97 3 3 chr15 69740750 69741050 -15954704 + AluSq SINE Alu 1 300 -13 689 266 58 54 chr15 69741050 69741121 -15954633 + L3 LINE CR1 566 635 -942 339 142 0 23 chr15 69741151 69741216 -15954538 - Alu SINE Alu -251 50 2 2202 258 102 51 chr15 69741234 69741601 -15954153 - L1MC4 LINE L1 -33 8009 7662 1824 150 28 0 chr15 69741601 69741887 -15953867 - AluJb SINE Alu -13 299 6 2202 258 102 51 chr15 69741887 69742100 -15953654 - L1MC4 LINE L1 -380 7662 7461 1958 174 0 0 chr15 69742100 69742410 -15953344 - AluJb SINE Alu -2 310 1 2404 70 3 29 chr15 69742412 69742728 -15953026 - AluY SINE Alu -3 308 1 2202 258 102 51 chr15 69742728 69742988 -15952766 - L1MC4 LINE L1 -581 7461 7216 2397 70 7 10 chr15 69742988 69743287 -15952467 - AluSc SINE Alu -11 298 1 2202 258 102 51 chr15 69743287 69743605 -15952149 - L1MC4 LINE L1 -826 7216 6781 2094 141 0 10 chr15 69743605 69743911 -15951843 + AluJb SINE Alu 1 303 -9 2202 258 102 51 chr15 69743911 69743938 -15951816 - L1MC4 LINE L1 -1261 6781 6757 2586 41 0 0 chr15 69743943 69744237 -15951517 - AluY SINE Alu -17 294 1 532 292 32 0 chr15 69744246 69744400 -15951354 + L3 LINE CR1 641 799 -778 31 0 0 0 chr15 69744400 69744431 -15951323 + AT_rich Low_complexity Low_complexity 1 31 0 2311 52 42 11 chr15 69744431 69744717 -15951037 - AluY SINE Alu -16 295 1 1748 221 154 51 chr15 69744814 69745374 -15950380 - L2 LINE L2 0 3313 2812 2260 100 0 20 chr15 69745374 69745673 -15950081 - AluSx SINE Alu -19 293 1 1748 221 154 51 chr15 69745673 69746044 -15949710 - L2 LINE L2 -501 2812 2282 2242 113 0 3 chr15 69746044 69746337 -15949417 + AluSg SINE Alu 1 292 -18 1748 221 154 51 chr15 69746337 69746430 -15949324 - L2 LINE L2 -1031 2282 2200 377 307 102 6 chr15 69746427 69746603 -15949151 + L3 LINE CR1 992 1184 -393 * 669 122 98 16 chr15 69747934 69748057 -15947697 - FLAM_C SINE Alu 0 133 1 1718 172 7 17 chr15 69748373 69748675 -15947079 - AluJb SINE Alu -13 299 1 21 36 0 0 chr15 69748818 69748846 -15946908 + AT_rich Low_complexity Low_complexity 1 28 0 748 167 0 8 chr15 69748852 69748984 -15946770 - FLAM_C SINE Alu -2 131 1 737 284 21 21 chr15 69748992 69749235 -15946519 - L1MC/D LINE L1 -2036 5772 5530 185 65 32 0 chr15 69749337 69749368 -15946386 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2121 103 7 0 chr15 69749372 69749645 -15946109 - AluSx SINE Alu -37 275 1 276 364 0 8 chr15 69749988 69750106 -15945648 + L2 LINE L2 1855 1971 -1343 21 0 0 0 chr15 69750123 69750144 -15945610 + AT_rich Low_complexity Low_complexity 1 21 0 719 217 0 0 chr15 69750144 69750273 -15945481 - FLAM_C SINE Alu -14 129 1 1982 123 6 75 chr15 69750329 69750663 -15945091 - AluSx SINE Alu -1 311 1 576 108 0 0 chr15 69750672 69750765 -15944989 - L1PA8 LINE L1 0 6172 6080 651 361 97 27 chr15 69750765 69751406 -15944348 + L2 LINE L2 1993 2696 -618 724 105 81 16 chr15 69751406 69751530 -15944224 - FLAM_C SINE Alu 0 133 2 651 361 97 27 chr15 69751530 69751641 -15944113 + L2 LINE L2 2696 2798 -516 926 169 180 52 chr15 69752172 69752439 -15943315 - AluSx SINE Alu -1 301 1 838 181 13 13 chr15 69753873 69754028 -15941726 + FRAM SINE Alu 1 155 -11 2245 115 0 0 chr15 69756146 69756442 -15939312 + AluSx SINE Alu 1 296 -16 2429 78 3 0 chr15 69756579 69756875 -15938879 - AluY SINE Alu -14 297 1 992 180 39 0 chr15 69757602 69757780 -15937974 + AluSg/x SINE Alu 119 303 -7 573 91 0 0 chr15 69757975 69758052 -15937702 + FRAM SINE Alu 21 97 -79 413 296 59 59 chr15 69758053 69758222 -15937532 - L1ME LINE L1 -352 5769 5601 294 159 0 32 chr15 69758347 69758410 -15937344 - AluJo SINE Alu -150 152 92 746 157 0 0 chr15 69758410 69758525 -15937229 - AluJo SINE Alu -187 115 1 254 204 61 0 chr15 69758536 69758585 -15937169 + MER2 DNA MER2_type 283 334 -11 1124 200 170 30 chr15 69758598 69758797 -15936957 + LTR7 LTR ERV1 1 171 -279 2580 71 0 0 chr15 69758797 69759105 -15936649 + AluY SINE Alu 1 308 -3 1124 200 170 30 chr15 69759105 69759300 -15936454 + LTR7 LTR ERV1 171 450 0 13501 120 11 40 chr15 69759300 69762050 -15933704 + HERVH LTR ERV1 1 2987 -4726 520 186 0 10 chr15 69762044 69762141 -15933613 + HERVH LTR ERV1 3140 3235 -4478 * 4089 115 8 7 chr15 69762132 69762742 -15933012 + HERVH LTR ERV1 4539 5149 -2564 2262 176 5 0 chr15 69762733 69763158 -15932596 + HERVH LTR ERV1 5590 6016 -1697 * 3358 110 11 40 chr15 69763151 69763725 -15932029 + HERVH LTR ERV1 7157 7713 0 784 166 103 49 chr15 69763725 69764112 -15931642 + LTR7 LTR ERV1 1 450 0 438 187 115 86 chr15 69764585 69764724 -15931030 - MER69A DNA AcHobo -8 169 27 1866 150 31 3 chr15 69764760 69765047 -15930707 + AluSx SINE Alu 1 295 -17 388 205 81 25 chr15 69765058 69765206 -15930548 + MER21B LTR ERV1 257 495 -436 3381 109 6 10 chr15 69765206 69765719 -15930035 - MER9 LTR ERVK 0 511 1 581 203 49 0 chr15 69765756 69765879 -15929875 + MER21B LTR ERV1 682 810 -53 1728 171 33 3 chr15 69765880 69766179 -15929575 + AluJo SINE Alu 1 308 -4 2407 90 0 3 chr15 69766204 69766504 -15929250 + AluSg SINE Alu 1 299 -11 1751 76 0 46 chr15 69766609 69766846 -15928908 - AluY SINE Alu -85 226 1 1803 164 3 39 chr15 69767298 69767464 -15928290 - AluJo SINE Alu -12 300 149 2315 105 10 0 chr15 69767464 69767760 -15927994 - AluSp SINE Alu -14 299 1 1803 164 3 39 chr15 69767760 69767904 -15927850 - AluJo SINE Alu -163 149 1 2168 93 25 0 chr15 69768144 69768447 -15927307 + AluSq SINE Alu 1 310 0 706 136 5 158 chr15 69769451 69769635 -15926119 + AluSg/x SINE Alu 135 290 -20 2399 104 0 0 chr15 69769635 69769933 -15925821 + AluSg SINE Alu 1 298 -12 1705 147 22 60 chr15 69769974 69770288 -15925466 + AluJb SINE Alu 1 302 -10 376 259 9 19 chr15 69770301 69770409 -15925345 - MIR SINE MIR 0 262 156 830 211 48 66 chr15 69771869 69771968 -15923786 + MIR SINE MIR 36 135 -127 925 123 0 18 chr15 69771968 69772131 -15923623 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2170 101 0 0 chr15 69772131 69772408 -15923346 - AluSg1 SINE Alu -32 277 1 830 211 48 66 chr15 69772408 69772535 -15923219 + MIR SINE MIR 133 259 -3 1759 133 12 96 chr15 69774503 69774825 -15920929 + AluJo SINE Alu 1 295 -17 197 253 181 0 chr15 69775383 69775466 -15920288 + L2 LINE L2 3172 3269 -3 2010 174 3 0 chr15 69775638 69775949 -15919805 + AluJb SINE Alu 1 312 0 2144 109 10 16 chr15 69775993 69776296 -15919458 + AluSc SINE Alu 1 301 -8 601 243 128 18 chr15 69776331 69776557 -15919197 + MIR SINE MIR 2 252 -10 1428 172 109 8 chr15 69776673 69776929 -15918825 - AluJb SINE Alu -12 300 19 279 259 29 0 chr15 69777761 69777837 -15917917 + MIR SINE MIR 80 158 -50 725 263 28 9 chr15 69778063 69778280 -15917474 - LTR16C LTR ERVL -11 480 260 288 237 144 17 chr15 69779828 69779946 -15915808 - L1ME4a LINE L1 -43 6078 5946 210 71 0 0 chr15 69779957 69779985 -15915769 + (CATTT)n Simple_repeat Simple_repeat 3 30 0 2155 105 0 0 chr15 69779994 69780271 -15915483 - AluSx SINE Alu -35 277 1 24 0 0 0 chr15 69780582 69780606 -15915148 + AT_rich Low_complexity Low_complexity 1 24 0 2093 125 3 13 chr15 69780673 69780977 -15914777 - AluJo SINE Alu -11 301 1 338 235 128 34 chr15 69783601 69783750 -15912004 - L1ME2 LINE L1 -25 6139 5977 242 269 13 39 chr15 69785124 69785202 -15910552 + MIR SINE MIR 186 261 -1 181 293 211 30 chr15 69786417 69786550 -15909204 - MIR SINE MIR -13 249 93 294 266 13 25 chr15 69786677 69786756 -15908998 + L2 LINE L2 3234 3311 -2 186 206 0 0 chr15 69787031 69787065 -15908689 + L2 LINE L2 3032 3065 -207 358 123 0 2 chr15 69787176 69787380 -15908374 + AluSx SINE Alu 1 254 -46 1356 145 112 85 chr15 69787480 69787558 -15908196 - MER39B LTR ERV1 -313 340 266 1753 159 7 24 chr15 69787558 69787853 -15907901 - AluJb SINE Alu -18 294 5 2186 128 0 7 chr15 69787863 69788167 -15907587 - AluSg SINE Alu -8 302 1 1356 145 112 85 chr15 69788167 69788224 -15907530 - MER39B LTR ERV1 -395 258 204 2323 109 0 3 chr15 69788224 69788527 -15907227 - AluSx SINE Alu -10 302 1 1356 145 112 85 chr15 69788527 69788710 -15907044 - MER39B LTR ERV1 -449 204 1 420 298 125 35 chr15 69789608 69790112 -15905642 - L1ME2 LINE L1 -161 5960 5398 2139 111 0 14 chr15 69790112 69790409 -15905345 + AluSq SINE Alu 1 293 -20 420 298 125 35 chr15 69790409 69790471 -15905283 - L1ME2 LINE L1 -723 5398 5343 834 210 12 6 chr15 69790477 69790644 -15905110 - FRAM SINE Alu -8 168 1 366 153 4 110 chr15 69790800 69790932 -15904822 - MER41A LTR ERV1 -9 516 403 2376 98 0 13 chr15 69790934 69791239 -15904515 + AluSx SINE Alu 2 302 -10 1524 191 0 4 chr15 69791247 69791520 -15904234 + AluJo SINE Alu 33 304 -8 2269 121 109 12 chr15 69791520 69791933 -15903821 + MER84 LTR ERVI 16 468 -39 836 68 42 0 chr15 69791934 69792052 -15903702 - MER41A LTR ERV1 0 554 432 2309 107 0 0 chr15 69792053 69792351 -15903403 + AluSg SINE Alu 1 298 -12 23 54 0 0 chr15 69792523 69792560 -15903194 + AT_rich Low_complexity Low_complexity 1 37 0 1283 141 5 25 chr15 69792577 69792775 -15902979 - AluJb SINE Alu -15 297 104 1190 113 11 11 chr15 69792783 69792960 -15902794 + AluSx SINE Alu 7 183 -129 930 79 79 0 chr15 69792988 69793114 -15902640 - AluSq/x SINE Alu -177 136 1 1868 156 30 3 chr15 69793125 69793464 -15902290 - MER66A LTR ERV1 -104 374 27 621 114 25 158 chr15 69793467 69793569 -15902185 + LTR23 LTR ERV1 301 376 -61 1833 167 13 3 chr15 69793569 69793869 -15901885 - AluJo SINE Alu -9 303 1 621 114 25 158 chr15 69793869 69793924 -15901830 + LTR23 LTR ERV1 376 437 0 2066 114 0 62 chr15 69793972 69794279 -15901475 + AluSx SINE Alu 5 292 -20 2176 112 3 22 chr15 69794956 69795268 -15900486 + AluSq SINE Alu 1 306 -7 913 160 16 14 chr15 69795422 69795593 -15900161 - FRAM SINE Alu -7 169 33 23 0 0 0 chr15 69795694 69795717 -15900037 + AT_rich Low_complexity Low_complexity 1 23 0 1681 150 26 44 chr15 69795723 69795826 -15899928 + L1MB3 LINE L1 5850 5953 -230 1772 178 52 0 chr15 69795826 69795946 -15899808 + AluJo SINE Alu 1 113 -199 303 28 0 0 chr15 69795946 69795982 -15899772 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1772 178 52 0 chr15 69795982 69796148 -15899606 + AluJo SINE Alu 113 302 -10 1681 150 26 44 chr15 69796148 69796383 -15899371 + L1MB3 LINE L1 5953 6182 -1 271 169 5 1 chr15 69796402 69796625 -15899129 + AluJo SINE Alu 42 296 -6 587 280 105 21 chr15 69796645 69796931 -15898823 + L1ME LINE L1 5482 5791 -330 791 179 21 14 chr15 69796948 69797093 -15898661 + MER82 DNA MER2_type 1 146 -507 1700 46 5 5 chr15 69797244 69797460 -15898294 - L1PA3 LINE L1 0 6155 5940 1936 144 0 17 chr15 69797546 69797845 -15897909 - AluSx SINE Alu -18 294 1 1782 141 31 3 chr15 69797854 69798145 -15897609 - AluJo SINE Alu -13 299 1 1651 197 60 90 chr15 69798509 69798682 -15897072 + MER82 DNA MER2_type 199 376 -277 2083 115 3 0 chr15 69798682 69798977 -15896777 + AluSx SINE Alu 1 296 -16 1651 197 60 90 chr15 69798977 69799270 -15896484 + MER82 DNA MER2_type 376 651 -2 2241 91 3 0 chr15 69799295 69799593 -15896161 + AluSq SINE Alu 1 299 -14 1615 169 7 11 chr15 69799663 69799976 -15895778 + AluJb SINE Alu 1 312 0 738 192 23 0 chr15 69799979 69800109 -15895645 + FLAM_A SINE Alu 1 133 0 198 0 0 0 chr15 69800139 69800161 -15895593 + (A)n Simple_repeat Simple_repeat 1 22 0 414 289 92 71 chr15 69800162 69800401 -15895353 - MER102b DNA MER1_type -15 326 83 2257 103 3 0 chr15 69800418 69800770 -15894984 + AluSp SINE Alu 2 354 0 634 148 90 0 chr15 69800844 69800966 -15894788 + FRAM SINE Alu 41 173 -3 2041 116 0 31 chr15 69801226 69801546 -15894208 - AluSx SINE Alu -2 310 1 257 182 0 45 chr15 69802398 69802442 -15893312 + MER81 DNA DNA 1 42 -72 461 203 0 0 chr15 69802520 69802599 -15893155 + MER81 DNA DNA 36 114 0 637 226 51 0 chr15 69802599 69802736 -15893018 + MIR SINE MIR 29 172 -90 2596 124 52 56 chr15 69802783 69803305 -15892449 - MER4E LTR ERV1 0 766 80 2038 127 3 3 chr15 69803305 69803613 -15892141 - AluSx SINE Alu -3 309 2 2596 124 52 56 chr15 69803613 69803693 -15892061 - MER4E LTR ERV1 -686 80 1 1338 69 23 69 chr15 69803718 69803769 -15891985 + L1MA2 LINE L1 6099 6151 -153 916 109 0 36 chr15 69803769 69803907 -15891847 + FLAM_C SINE Alu 1 133 0 1338 69 23 69 chr15 69803907 69804071 -15891683 + L1MA2 LINE L1 6151 6304 0 2011 108 0 7 chr15 69804088 69804399 -15891355 + AluSx SINE Alu 1 309 0 1234 165 63 7 chr15 69804572 69804857 -15890897 - AluSq SINE Alu -12 301 1 720 204 26 80 chr15 69804859 69804955 -15890799 - L1MC4a LINE L1 -1983 5825 5725 210 37 0 0 chr15 69804955 69804982 -15890772 + (TTA)n Simple_repeat Simple_repeat 1 27 0 948 196 0 6 chr15 69804982 69805140 -15890614 - FAM SINE Alu -18 157 1 720 204 26 80 chr15 69805140 69805268 -15890486 - L1MC4a LINE L1 -2081 5727 5612 231 196 0 22 chr15 69805552 69805598 -15890156 - LTR16A1 LTR ERVL 0 457 413 1667 185 0 16 chr15 69806280 69806610 -15889144 + AluJo SINE Alu 1 312 0 508 163 0 101 chr15 69806656 69806681 -15889073 + MER104 DNA Tc2 14 40 -1858 2066 113 0 0 chr15 69806681 69806972 -15888782 - AluSx SINE Alu -21 291 1 508 163 0 101 chr15 69806972 69807075 -15888679 + MER104 DNA Tc2 40 129 -51 535 188 0 30 chr15 69807751 69807852 -15887902 + MER5A DNA MER1_type 9 106 -83 231 132 26 0 chr15 69807878 69807916 -15887838 + L1MB7 LINE L1 5750 5788 -386 1094 174 5 23 chr15 69807916 69808134 -15887620 + AluJb SINE Alu 1 214 -98 1850 145 17 31 chr15 69808134 69808421 -15887333 + L1MB7 LINE L1 5823 6106 -78 2123 120 0 0 chr15 69808421 69808722 -15887032 + AluSx SINE Alu 1 301 -11 1850 145 17 31 chr15 69808722 69808785 -15886969 + L1MB7 LINE L1 6106 6168 -16 434 204 111 19 chr15 69809527 69809635 -15886119 + FLAM_C SINE Alu 14 131 -12 1157 110 0 6 chr15 69809775 69809938 -15885816 - AluSg/x SINE Alu -17 295 134 1996 121 3 7 chr15 69809938 69810258 -15885496 - AluSx SINE Alu 0 312 1 22 88 0 0 chr15 69810318 69810375 -15885379 + AT_rich Low_complexity Low_complexity 1 57 0 30 0 0 0 chr15 69810444 69810474 -15885280 + AT_rich Low_complexity Low_complexity 1 30 0 2288 82 0 13 chr15 69810516 69810831 -15884923 - AluY SINE Alu 0 311 1 1939 109 3 14 chr15 69810832 69810994 -15884760 - AluSx SINE Alu -17 295 136 2038 119 0 0 chr15 69810994 69811288 -15884466 - AluSg SINE Alu -16 294 1 1939 109 3 14 chr15 69811288 69811410 -15884344 - AluSx SINE Alu -176 136 14 236 190 35 17 chr15 69812007 69812065 -15883689 + (TATG)n Simple_repeat Simple_repeat 1 59 0 571 279 74 70 chr15 69812080 69812524 -15883230 - MLT1K LTR MaLR 0 588 143 367 316 65 64 chr15 69812818 69812966 -15882788 + MLT1J LTR MaLR 257 403 -212 2117 131 0 6 chr15 69812966 69813280 -15882474 - AluSx SINE Alu 0 312 1 367 316 65 64 chr15 69813280 69813384 -15882370 + MLT1J LTR MaLR 403 615 0 234 143 0 0 chr15 69813826 69813855 -15881899 + MLT1F LTR MaLR 1 29 -513 2107 162 49 50 chr15 69813855 69813878 -15881876 + MLT2B3 LTR ERVL 1 23 -430 1726 185 0 0 chr15 69813878 69814170 -15881584 + AluJo SINE Alu 1 292 -20 2107 162 49 50 chr15 69814170 69814586 -15881168 + MLT2B3 LTR ERVL 23 453 0 1507 188 211 13 chr15 69814593 69814961 -15880793 + MLT1F LTR MaLR 32 480 -62 1812 159 0 3 chr15 69814961 69815251 -15880503 - AluJo SINE Alu -22 290 2 1507 188 211 13 chr15 69815251 69815265 -15880489 + MLT1F LTR MaLR 480 490 -52 3196 191 28 84 chr15 69815300 69816322 -15879432 - LTR5 LTR ERVK 0 969 5 363 148 3 2 chr15 69818184 69818266 -15877488 + MLT1F1 LTR MaLR 477 559 -2 2067 84 0 7 chr15 69818293 69818577 -15877177 + AluSx SINE Alu 1 282 -30 249 33 0 0 chr15 69818580 69818610 -15877144 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 184 365 0 0 chr15 69819337 69819389 -15876365 + L2 LINE L2 3136 3187 -85 2419 68 0 0 chr15 69819422 69819733 -15876021 - AluY SINE Alu 0 311 1 1347 115 5 0 chr15 69819950 69820142 -15875612 - AluSx SINE Alu -119 193 1 486 123 14 0 chr15 69820143 69820216 -15875538 - MER5A DNA MER1_type -115 74 1 342 0 0 0 chr15 69820881 69820919 -15874835 + (TG)n Simple_repeat Simple_repeat 2 39 0 242 59 0 29 chr15 69820922 69820956 -15874798 - MIR SINE MIR -74 188 156 256 235 0 0 chr15 69821737 69821788 -15873966 - L2 LINE L2 -18 3295 3245 2004 125 3 3 chr15 69821841 69822137 -15873617 - AluSx SINE Alu -15 297 2 2096 110 0 0 chr15 69823913 69824204 -15871550 + AluSx SINE Alu 1 291 -21 2812 3 0 0 chr15 69824296 69824606 -15871148 + AluYb8 SINE Alu 1 310 -8 238 146 36 0 chr15 69825270 69825325 -15870429 + L1ME4a LINE L1 5379 5435 -686 679 253 14 0 chr15 69825334 69825480 -15870274 + MIR SINE MIR 2 149 -113 2088 100 28 0 chr15 69825482 69825771 -15869983 + AluSg SINE Alu 1 297 -13 1837 146 0 10 chr15 69825794 69826088 -15869666 + AluSx SINE Alu 1 291 -21 1616 168 17 7 chr15 69826153 69826445 -15869309 - AluJo SINE Alu -17 295 1 623 248 65 76 chr15 69826460 69826750 -15869004 + L1ME4a LINE L1 5483 5769 -352 514 61 0 0 chr15 69826751 69826817 -15868937 - FRAM SINE Alu -79 97 32 395 280 201 29 chr15 69826883 69827162 -15868592 + L1ME4a LINE L1 5784 6110 -11 784 173 0 0 chr15 69827172 69827305 -15868449 + FLAM_C SINE Alu 1 133 0 1312 87 6 0 chr15 69827314 69827487 -15868267 + AluSx SINE Alu 14 187 -125 350 276 211 20 chr15 69827834 69827986 -15867768 + MER5A DNA MER1_type 9 189 0 1957 149 0 0 chr15 69829510 69829799 -15865955 - AluJb SINE Alu -23 289 1 1960 128 3 7 chr15 69829852 69830157 -15865597 - AluSx SINE Alu -8 304 1 1007 316 98 9 chr15 69830395 69831187 -15864567 + L2 LINE L2 2451 3313 0 253 319 148 24 chr15 69831191 69831401 -15864353 - L2 LINE L2 -402 2912 2677 214 184 0 0 chr15 69831450 69831488 -15864266 + MIR SINE MIR 200 237 -25 1698 155 0 39 chr15 69831730 69832039 -15863715 + AluJo SINE Alu 1 297 -15 1559 158 0 63 chr15 69832122 69832305 -15863449 - AluJb SINE Alu -16 296 103 1967 113 0 7 chr15 69832305 69832588 -15863166 + AluSq SINE Alu 1 281 -32 204 40 0 0 chr15 69832595 69832620 -15863134 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1559 158 0 63 chr15 69832620 69832744 -15863010 - AluJb SINE Alu -215 97 1 1595 97 90 34 chr15 69832859 69833161 -15862593 - AluSx SINE Alu 0 317 1 183 405 0 13 chr15 69833832 69833911 -15861843 - L2 LINE L2 -10 3262 3185 682 244 17 11 chr15 69833932 69834108 -15861646 + MIR SINE MIR 79 255 -7 226 359 0 11 chr15 69834306 69834398 -15861356 + MER5A DNA MER1_type 1 91 -98 361 263 35 40 chr15 69834404 69834602 -15861152 + L1ME3A LINE L1 5779 5975 -195 1696 147 0 0 chr15 69834684 69834949 -15860805 - AluSx SINE Alu -3 309 45 203 167 0 0 chr15 69835218 69835254 -15860500 + (CA)n Simple_repeat Simple_repeat 1 36 0 2300 94 3 3 chr15 69835539 69835848 -15859906 - AluSx SINE Alu -3 309 1 305 214 68 34 chr15 69835939 69836056 -15859698 - L1MC/D LINE L1 -2336 5472 5352 254 187 176 22 chr15 69836195 69836286 -15859468 - L1ME4a LINE L1 -50 6071 5967 190 154 51 0 chr15 69836315 69836354 -15859400 + MIR SINE MIR 103 143 -119 25 51 0 0 chr15 69836583 69836622 -15859132 + AT_rich Low_complexity Low_complexity 1 39 0 2056 114 3 0 chr15 69836779 69837068 -15858686 + AluSg SINE Alu 6 295 -15 324 331 88 7 chr15 69837155 69837291 -15858463 + L1MC4 LINE L1 6550 6696 -1346 * 341 264 22 11 chr15 69837218 69837309 -15858445 - L1MC4 LINE L1 -1341 6701 6610 1738 164 3 3 chr15 69837358 69837651 -15858103 + AluJo SINE Alu 1 293 -19 1999 115 7 3 chr15 69837701 69837997 -15857757 - AluSx SINE Alu -14 298 2 2326 80 0 0 chr15 69838592 69838893 -15856861 - AluSx SINE Alu -11 301 1 1163 89 0 6 chr15 69838908 69839065 -15856689 - AluSg1 SINE Alu -153 156 1 432 267 122 72 chr15 69839344 69839489 -15856265 - L2 LINE L2 0 3272 3136 2154 119 0 0 chr15 69839489 69839799 -15855955 - AluSx SINE Alu -2 310 1 432 267 122 72 chr15 69839799 69839915 -15855839 - L2 LINE L2 -136 3136 2998 21 0 0 0 chr15 69840107 69840128 -15855626 + AT_rich Low_complexity Low_complexity 1 21 0 1982 126 0 13 chr15 69840221 69840522 -15855232 - AluSx SINE Alu -5 307 11 1870 141 0 3 chr15 69840533 69840830 -15854924 - AluJb SINE Alu -12 300 5 5264 78 3 26 chr15 69841081 69841785 -15853969 + LTR12 LTR ERV1 1 688 0 2158 91 7 0 chr15 69842075 69842373 -15853381 - AluY SINE Alu -11 300 1 665 312 97 0 chr15 69842526 69842763 -15852991 + MIR SINE MIR 3 262 0 761 274 83 0 chr15 69843232 69843462 -15852292 + MIR SINE MIR 1 249 -13 2033 212 94 40 chr15 69844044 69844545 -15851209 - MLT1E3 LTR MaLR -92 532 5 8467 175 7 16 chr15 69844589 69844986 -15850768 - THE1B-int LTR MaLR -199 1452 1053 2141 150 31 3 chr15 69844986 69845340 -15850414 - THE1B LTR MaLR 0 364 1 8467 175 7 16 chr15 69845340 69846040 -15849714 - THE1B-int LTR MaLR -598 1053 370 2313 84 3 0 chr15 69846040 69846339 -15849415 + AluSx SINE Alu 1 300 -12 8467 175 7 16 chr15 69846339 69846706 -15849048 - THE1B-int LTR MaLR -1281 370 1 2600 117 45 40 chr15 69846706 69846761 -15848993 - MSTA LTR MaLR 0 428 375 2015 148 0 10 chr15 69846761 69847059 -15848695 - AluSx SINE Alu -17 295 1 2600 117 45 40 chr15 69847059 69847429 -15848325 - MSTA LTR MaLR -53 375 1 253 235 0 0 chr15 69847486 69847537 -15848217 - HsTC2 DNA Tc2 -1819 79 29 245 297 22 22 chr15 69847661 69847752 -15848002 - L2 LINE L2 -235 3037 2947 267 229 17 131 chr15 69847954 69848129 -15847625 - L1ME4a LINE L1 -59 6062 5908 283 258 54 11 chr15 69848775 69848868 -15846886 - L1P2 LINE L1 -329 5825 5729 1511 163 62 10 chr15 69849129 69849418 -15846336 - AluJb SINE Alu -8 304 1 391 291 173 6 chr15 69849461 69849640 -15846114 + MIR SINE MIR 12 220 -42 2281 126 0 0 chr15 69849771 69850081 -15845673 + AluSx SINE Alu 1 310 -2 2393 91 0 0 chr15 69850344 69850640 -15845114 + AluSx SINE Alu 1 296 -16 2204 105 6 35 chr15 69850687 69851000 -15844754 + AluSq SINE Alu 1 304 -9 29 28 0 0 chr15 69851038 69851074 -15844680 + AT_rich Low_complexity Low_complexity 1 36 0 2463 75 7 0 chr15 69851232 69851537 -15844217 - AluY SINE Alu -4 307 1 2434 96 0 0 chr15 69851540 69851843 -15843911 - AluSg SINE Alu -7 303 1 1772 154 12 72 chr15 69852171 69852503 -15843251 + AluSx SINE Alu 1 312 0 1293 139 5 40 chr15 69853468 69853691 -15842063 + AluJo SINE Alu 82 296 -16 378 0 0 0 chr15 69853818 69853860 -15841894 + (CA)n Simple_repeat Simple_repeat 2 43 0 2233 102 3 0 chr15 69854019 69854312 -15841442 + AluSq SINE Alu 1 294 -19 2289 85 3 26 chr15 69855875 69856182 -15839572 - AluY SINE Alu -10 301 2 1903 144 0 10 chr15 69856193 69856484 -15839270 - AluSx SINE Alu -24 288 1 200 266 105 42 chr15 69857438 69857581 -15838173 - L2 LINE L2 -946 2368 2217 2448 82 0 7 chr15 69857628 69857934 -15837820 + AluSx SINE Alu 1 304 -8 2651 42 0 0 chr15 69857935 69858244 -15837510 + AluY SINE Alu 2 310 -1 204 247 111 0 chr15 69859603 69859684 -15836070 + MIR SINE MIR 45 134 -74 1713 120 106 7 chr15 69860108 69860383 -15835371 - AluSq SINE Alu -11 302 1 1866 160 7 7 chr15 69860439 69860739 -15835015 + AluJo SINE Alu 1 300 -12 596 254 158 5 chr15 69860981 69861190 -15834564 + MIR SINE MIR 16 256 -6 1665 165 0 15 chr15 69861718 69861991 -15833763 + AluJb SINE Alu 1 269 -43 180 0 0 0 chr15 69862836 69862856 -15832898 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 211 150 100 0 chr15 69863425 69863465 -15832289 - MIR3 SINE MIR -48 160 117 2277 105 10 0 chr15 69863507 69863811 -15831943 - AluSx SINE Alu -5 307 1 338 244 51 68 chr15 69863829 69863955 -15831799 - MER5A DNA MER1_type -3 186 62 1234 130 118 127 chr15 69863955 69864301 -15831453 + MER2 DNA MER2_type 2 344 0 338 244 51 68 chr15 69864301 69864350 -15831404 - MER5A DNA MER1_type -127 62 14 2411 75 3 7 chr15 69864618 69864924 -15830830 + AluSp SINE Alu 1 305 -8 2582 62 0 0 chr15 69866079 69866386 -15829368 - AluY SINE Alu -4 307 1 2319 91 0 3 chr15 69867622 69867920 -15827834 - AluSx SINE Alu -15 297 1 2615 62 0 0 chr15 69868277 69868582 -15827172 - AluY SINE Alu -6 305 1 2413 96 0 6 chr15 69868638 69868952 -15826802 - AluSq SINE Alu -1 312 1 1028 155 150 0 chr15 69869299 69869486 -15826268 - Tigger5 DNA MER2_type 0 2323 2109 2149 128 3 10 chr15 69869487 69869792 -15825962 + AluSx SINE Alu 1 303 -9 825 162 73 42 chr15 69869825 69870016 -15825738 - AluJo SINE Alu -115 197 1 523 179 8 65 chr15 69870437 69870560 -15825194 - AluJo SINE Alu -176 136 21 21 0 0 0 chr15 69872095 69872116 -15823638 + AT_rich Low_complexity Low_complexity 1 21 0 531 279 128 14 chr15 69872336 69872555 -15823199 - MIR SINE MIR -12 250 7 203 264 264 8 chr15 69872653 69872774 -15822980 - MIR SINE MIR -94 168 17 1503 153 8 28 chr15 69873756 69874010 -15821744 + AluJo SINE Alu 1 249 -63 28 29 0 0 chr15 69874174 69874209 -15821545 + AT_rich Low_complexity Low_complexity 1 35 0 2114 116 0 3 chr15 69874441 69874733 -15821021 - AluSx SINE Alu -12 300 10 1366 270 46 33 chr15 69874831 69875374 -15820380 - L1MC/D LINE L1 -743 5403 5196 1773 128 80 7 chr15 69875374 69875648 -15820106 - AluSx SINE Alu -18 294 1 1366 270 46 33 chr15 69875648 69875887 -15819867 - L1MC/D LINE L1 -950 5196 4962 325 282 51 39 chr15 69876341 69876497 -15819257 + MER103 DNA DNA 2 159 -7 384 344 58 41 chr15 69876793 69877084 -15818670 + L3 LINE CR1 117 412 -1165 1135 64 21 0 chr15 69877088 69877229 -15818525 - AluY SINE Alu -166 145 2 649 170 59 0 chr15 69877229 69877364 -15818390 + L1MB7 LINE L1 6026 6168 -16 273 328 208 11 chr15 69877536 69877820 -15817934 + L3 LINE CR1 786 1125 -452 299 333 34 0 chr15 69877972 69878089 -15817665 + L3 LINE CR1 1122 1242 -335 816 197 0 0 chr15 69879571 69879718 -15816036 - AluJ SINE Alu -24 288 142 2269 122 0 0 chr15 69880003 69880307 -15815447 - AluSx SINE Alu -8 304 1 724 200 7 7 chr15 69880308 69880443 -15815311 - AluJ SINE Alu -176 136 2 2810 38 2 0 chr15 69880524 69881021 -15814733 - L1PA5 LINE L1 -606 5548 5050 5041 43 0 13 chr15 69881021 69881626 -15814128 + L1PA5 LINE L1 5554 6154 0 829 180 0 31 chr15 69882026 69882214 -15813540 - AluJb SINE Alu 0 312 137 465 207 74 22 chr15 69882676 69882811 -15812943 - L1MB7 LINE L1 -10 6174 6033 193 313 129 7 chr15 69883085 69883232 -15812522 + L2 LINE L2 2586 2750 -564 3095 107 64 4 chr15 69884051 69884517 -15811237 - MER84 LTR ERVI 0 507 14 377 258 17 33 chr15 69884520 69884640 -15811114 - MIR SINE MIR -51 211 94 529 143 0 195 chr15 69884943 69885097 -15810657 + AluSq/x SINE Alu 2 125 -187 23 0 0 0 chr15 69885102 69885125 -15810629 + AT_rich Low_complexity Low_complexity 1 23 0 393 362 151 15 chr15 69885127 69885729 -15810025 + L2 LINE L2 1782 2465 -849 245 274 91 48 chr15 69885824 69886054 -15809700 - L1ME LINE L1 -589 5532 5293 7968 45 6 9 chr15 69886791 69887348 -15808406 - L1PA5 LINE L1 -2 6152 5595 2443 84 0 0 chr15 69887348 69887646 -15808108 - AluY SINE Alu -13 298 1 7968 45 6 9 chr15 69887646 69888729 -15807025 - L1PA5 LINE L1 -559 5595 4407 1680 170 3 10 chr15 69889074 69889368 -15806386 + AluJo SINE Alu 1 292 -20 310 286 148 39 chr15 69889634 69889645 -15806109 + MIR SINE MIR 10 18 -244 1574 139 82 36 chr15 69889645 69889926 -15805828 + AluJb SINE Alu 12 305 -7 310 286 148 39 chr15 69889926 69890117 -15805637 + MIR SINE MIR 18 234 -28 287 325 13 0 chr15 69890569 69890646 -15805108 + L3 LINE CR1 1007 1084 -493 448 211 23 39 chr15 69890709 69890837 -15804917 - MIR SINE MIR -1 261 136 241 299 137 20 chr15 69890944 69891141 -15804613 - MIR SINE MIR -35 227 8 227 267 55 124 chr15 69891207 69891424 -15804330 + L3 LINE CR1 1371 1572 -5 563 178 19 19 chr15 69891506 69891613 -15804141 - AluJb SINE Alu -26 286 180 1885 113 62 4 chr15 69891640 69891915 -15803839 + AluSx SINE Alu 1 291 -21 2399 98 0 0 chr15 69891963 69892260 -15803494 + AluSx SINE Alu 1 297 -15 277 329 13 0 chr15 69892363 69892439 -15803315 + L3 LINE CR1 1007 1083 -494 391 176 0 27 chr15 69892460 69892534 -15803220 - AluSp/q SINE Alu -2 301 230 1242 147 0 16 chr15 69892534 69892725 -15803029 - AluSx SINE Alu -119 193 6 296 282 119 13 chr15 69893114 69893341 -15802413 + L1ME LINE L1 5604 5854 -267 537 58 0 0 chr15 69893379 69893448 -15802306 + (TA)n Simple_repeat Simple_repeat 1 69 0 2091 133 3 0 chr15 69893476 69893762 -15801992 - AluJo SINE Alu -25 287 1 1753 179 4 0 chr15 69894016 69894296 -15801458 - AluSx SINE Alu -27 285 5 2292 104 0 7 chr15 69895322 69895619 -15800135 + AluSx SINE Alu 1 295 -17 2349 119 0 0 chr15 69895797 69896107 -15799647 + AluSx SINE Alu 3 312 0 210 167 0 0 chr15 69896236 69896272 -15799482 + T-rich Low_complexity Low_complexity 1 36 0 2521 66 0 3 chr15 69897440 69897742 -15798012 + AluSg SINE Alu 1 301 -9 1416 191 24 0 chr15 69897753 69898005 -15797749 + AluJo SINE Alu 1 258 -54 2208 116 0 0 chr15 69898225 69898519 -15797235 + AluSx SINE Alu 1 294 -18 1745 165 0 17 chr15 69898847 69899144 -15796610 - AluJb SINE Alu -20 292 1 1600 159 3 62 chr15 69899264 69899572 -15796182 + AluJb SINE Alu 1 290 -22 2168 100 7 7 chr15 69899629 69899918 -15795836 - AluSx SINE Alu -22 290 2 281 350 148 27 chr15 69899932 69900155 -15795599 - MIR SINE MIR -9 253 4 398 166 12 12 chr15 69900692 69900787 -15794967 - L1MB7 LINE L1 -2 6176 6082 449 256 87 17 chr15 69901105 69901277 -15794477 + L1ME LINE L1 5606 5789 -332 271 199 153 19 chr15 69901426 69901553 -15794201 + HAL1b LINE L1 1242 1347 -1 214 146 42 0 chr15 69901654 69901702 -15794052 + (TA)n Simple_repeat Simple_repeat 2 51 0 237 179 29 36 chr15 69901707 69901847 -15793907 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 330 317 77 27 chr15 69902882 69903065 -15792689 + L2 LINE L2 2281 2472 -842 328 293 127 28 chr15 69903717 69903898 -15791856 - L2 LINE L2 0 3313 3115 2423 72 0 3 chr15 69904922 69905242 -15790512 + AluSq SINE Alu 1 319 0 1226 126 150 10 chr15 69905421 69905628 -15790126 - MER46A DNA MER2_type 0 236 1 1975 154 3 0 chr15 69905967 69906260 -15789494 + AluJo SINE Alu 6 299 -13 711 206 54 49 chr15 69906991 69907195 -15788559 + MER46C DNA MER2_type 134 338 0 2283 122 135 21 chr15 69907737 69908121 -15787633 - MSTA LTR MaLR 0 428 1 35 24 0 0 chr15 69908244 69908286 -15787468 + AT_rich Low_complexity Low_complexity 1 42 0 1367 206 31 31 chr15 69908314 69908606 -15787148 - AluJo SINE Alu -20 292 1 299 319 86 0 chr15 69909112 69909228 -15786526 - L2 LINE L2 -1 3312 3187 2296 112 0 0 chr15 69909498 69909792 -15785962 - AluSx SINE Alu -18 294 1 220 274 0 55 chr15 69909804 69909877 -15785877 - MIR SINE MIR -119 89 21 197 250 0 0 chr15 69910382 69910430 -15785324 + MIR SINE MIR 114 161 -101 354 261 62 8 chr15 69911070 69911200 -15784554 - MIR SINE MIR -1 261 125 2476 72 10 3 chr15 69911594 69911900 -15783854 + AluSq SINE Alu 1 308 -5 835 225 109 38 chr15 69912517 69912789 -15782965 - L1MB7 LINE L1 -3 6181 5876 1291 116 53 31 chr15 69913004 69913229 -15782525 + AluSg SINE Alu 61 290 -20 1937 132 0 11 chr15 69913474 69913747 -15782007 + AluSx SINE Alu 21 290 -22 1681 158 25 29 chr15 69913747 69914025 -15781729 - AluJo SINE Alu -31 281 4 2106 100 7 0 chr15 69914571 69914841 -15780913 + AluSx SINE Alu 23 294 -18 333 0 0 0 chr15 69915011 69915048 -15780706 + (TG)n Simple_repeat Simple_repeat 2 38 0 1590 191 24 14 chr15 69915057 69915351 -15780403 - AluJo SINE Alu -15 297 1 1780 143 12 0 chr15 69915636 69915895 -15779859 + AluJb SINE Alu 27 288 -24 30 0 0 0 chr15 69915895 69915925 -15779829 + AT_rich Low_complexity Low_complexity 1 30 0 833 82 97 30 chr15 69916600 69916734 -15779020 - AluSg/x SINE Alu -3 307 165 187 195 49 0 chr15 69917466 69917507 -15778247 - L2 LINE L2 -396 2917 2875 270 239 239 17 chr15 69917818 69917935 -15777819 + L2 LINE L2 3171 3313 0 252 239 45 23 chr15 69918511 69918599 -15777155 - MIR SINE MIR -50 212 123 237 355 177 0 chr15 69918631 69918834 -15776920 + L3 LINE CR1 969 1207 -370 250 323 54 11 chr15 69918917 69919010 -15776744 + L3 LINE CR1 1388 1484 -93 246 245 95 88 chr15 69919060 69919207 -15776547 + L3 LINE CR1 1427 1574 -3 276 98 59 0 chr15 69920579 69920630 -15775124 - L1MA4 LINE L1 -6 6294 6241 5090 134 61 45 chr15 69920676 69921992 -15773762 - L1MA4 LINE L1 -45 6255 4903 1776 154 73 144 chr15 69921992 69922484 -15773270 - MSTB2 LTR MaLR 0 457 1 5090 134 61 45 chr15 69922484 69922600 -15773154 - L1MA4 LINE L1 -1397 4903 4790 2293 102 0 0 chr15 69922601 69922895 -15772859 - AluSc SINE Alu -15 294 1 289 207 0 0 chr15 69923326 69923384 -15772370 - L1MB7 LINE L1 0 6184 6127 474 293 98 65 chr15 69924301 69924921 -15770833 - L1MC5 LINE L1 -291 7751 7128 1216 252 72 98 chr15 69925580 69926283 -15769471 - MER21B LTR ERV1 -155 708 24 277 365 83 6 chr15 69926397 69926553 -15769201 + MIR3 SINE MIR 10 177 -31 2064 105 0 49 chr15 69927358 69927662 -15768092 + AluSx SINE Alu 1 289 -23 248 164 0 0 chr15 69927662 69927717 -15768037 + L1MC4 LINE L1 6649 6703 -1339 1377 261 63 60 chr15 69927755 69928195 -15767559 - L1ME3A LINE L1 -17 6153 5709 2085 108 0 51 chr15 69928195 69928510 -15767244 - AluSx SINE Alu -13 299 1 1377 261 63 60 chr15 69928510 69928639 -15767115 - L1ME3A LINE L1 -461 5709 5582 1965 166 104 14 chr15 69928648 69929063 -15766691 - L1MB8 LINE L1 0 6178 5727 331 111 19 0 chr15 69929064 69929118 -15766636 - L1M4 LINE L1 -397 5781 5727 214 374 0 9 chr15 69929326 69929433 -15766321 + MER5A DNA MER1_type 83 188 -1 329 200 27 0 chr15 69930153 69930228 -15765526 + L1M4 LINE L1 5695 5771 -407 226 105 18 18 chr15 69930436 69930493 -15765261 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 741 175 100 15 chr15 69930601 69930801 -15764953 - L1M4 LINE L1 -2435 4209 3993 1493 74 25 0 chr15 69930828 69931031 -15764723 - MER41A LTR ERV1 -6 548 341 837 211 55 19 chr15 69931031 69931337 -15764417 - L1M4 LINE L1 -5868 674 321 708 201 18 37 chr15 69931350 69931484 -15764270 - L1M4 LINE L1 -6314 228 93 1863 185 0 0 chr15 69931484 69931792 -15763962 + AluJb SINE Alu 1 308 -4 2142 97 31 3 chr15 69931793 69932081 -15763673 + AluSq SINE Alu 1 296 -17 708 201 18 37 chr15 69932081 69932108 -15763646 - L1M4 LINE L1 -6448 94 68 1840 148 48 0 chr15 69932325 69932615 -15763139 + AluSx SINE Alu 1 304 -8 2068 89 0 101 chr15 69932626 69932952 -15762802 + AluY SINE Alu 1 293 -18 246 217 14 29 chr15 69933249 69933318 -15762436 + (TATG)n Simple_repeat Simple_repeat 3 70 0 191 344 108 0 chr15 69934460 69934553 -15761201 + L2 LINE L2 3122 3224 -48 2373 81 0 7 chr15 69935341 69935638 -15760116 + AluY SINE Alu 1 295 -16 1409 168 69 4 chr15 69936288 69936444 -15759310 - AluJo SINE Alu -16 296 152 333 0 0 0 chr15 69936444 69936481 -15759273 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1409 168 69 4 chr15 69936481 69936598 -15759156 - AluJo SINE Alu -160 152 5 2274 99 0 0 chr15 69937582 69937874 -15757880 + AluSx SINE Alu 1 292 -20 1997 117 14 3 chr15 69938821 69939137 -15756617 - AluSx SINE Alu 0 319 1 409 268 41 0 chr15 69939137 69939234 -15756520 - L2 LINE L2 -7 3306 3206 2036 152 0 0 chr15 69939321 69939610 -15756144 + AluJb SINE Alu 1 289 -23 459 235 228 13 chr15 69941134 69941283 -15754471 - MER5A DNA MER1_type 0 189 9 523 291 153 49 chr15 69941293 69941902 -15753852 + L2 LINE L2 1666 2337 -977 618 256 21 110 chr15 69941915 69942251 -15753503 - MLT1J LTR MaLR -44 467 162 2530 67 0 0 chr15 69942275 69942572 -15753182 - AluSp SINE Alu -16 297 1 217 432 0 0 chr15 69942681 69942799 -15752955 + L2 LINE L2 2554 2671 -643 1088 171 14 57 chr15 69942840 69943051 -15752703 + AluJo SINE Alu 85 286 -26 1827 123 16 76 chr15 69945589 69945767 -15749987 - AluSx SINE Alu -14 298 146 2209 99 3 3 chr15 69945767 69946071 -15749683 - AluSq SINE Alu -9 304 1 1827 123 16 76 chr15 69946071 69946209 -15749545 - AluSx SINE Alu -166 146 1 2107 147 0 7 chr15 69946241 69946548 -15749206 + AluSx SINE Alu 1 305 -7 408 252 88 58 chr15 69946637 69946704 -15749050 - L1ME4a LINE L1 -224 5897 5834 1841 166 10 10 chr15 69946704 69947006 -15748748 - AluJb SINE Alu -10 302 1 408 252 88 58 chr15 69947006 69947232 -15748522 - L1ME4a LINE L1 -287 5834 5595 2113 138 3 0 chr15 69948759 69949063 -15746691 - AluSq SINE Alu -8 305 1 458 297 29 36 chr15 69949118 69949256 -15746498 - L2 LINE L2 0 3272 3136 228 161 274 0 chr15 69950063 69950125 -15745629 - MER5C DNA MER1_type -244 80 2 1605 161 0 29 chr15 69950230 69950503 -15745251 + AluJb SINE Alu 3 267 -45 723 186 31 0 chr15 69950880 69951009 -15744745 + FLAM_A SINE Alu 1 133 0 487 200 0 9 chr15 69951273 69951383 -15744371 + MER63 DNA MER1_type 128 236 -825 2270 109 3 0 chr15 69951436 69951740 -15744014 - AluSx SINE Alu -7 305 1 741 288 154 0 chr15 69951750 69952017 -15743737 - MLT1D LTR MaLR -8 497 190 234 0 0 0 chr15 69952042 69952068 -15743686 + (T)n Simple_repeat Simple_repeat 1 26 0 379 217 0 0 chr15 69952081 69952150 -15743604 - FRAM/FAM SINE Alu -106 69 1 327 295 54 72 chr15 69952274 69952552 -15743202 + L2 LINE L2 2972 3244 -28 194 359 0 26 chr15 69952570 69952648 -15743106 + MIR SINE MIR 47 122 -140 2366 93 0 3 chr15 69955271 69955581 -15740173 - AluY SINE Alu -2 309 1 312 232 30 20 chr15 69955618 69955717 -15740037 + MER5A DNA MER1_type 7 106 -83 2289 124 0 0 chr15 69956205 69956512 -15739242 - AluSx SINE Alu -5 307 1 808 130 0 0 chr15 69957212 69957327 -15738427 - AluJo SINE Alu -10 302 188 876 127 0 15 chr15 69957332 69957466 -15738288 - AluJo SINE Alu -170 132 1 198 0 0 0 chr15 69958181 69958203 -15737551 + (CTG)n Simple_repeat Simple_repeat 2 23 0 998 151 141 109 chr15 69958603 69958713 -15737041 + MER2 DNA MER2_type 5 110 -235 2286 87 3 0 chr15 69958713 69958999 -15736755 + AluY SINE Alu 1 287 -24 306 0 0 0 chr15 69959003 69959037 -15736717 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 998 151 141 109 chr15 69959037 69959225 -15736529 + MER2 DNA MER2_type 112 318 -27 2264 108 10 7 chr15 69959894 69960200 -15735554 - AluSx SINE Alu -5 307 1 502 294 100 4 chr15 69960583 69960814 -15734940 - MIR SINE MIR -6 256 4 2231 71 11 14 chr15 69961569 69961881 -15733873 - AluY SINE Alu 0 311 1 1129 158 201 35 chr15 69962954 69963213 -15732541 + AluJb SINE Alu 1 302 0 2040 140 14 0 chr15 69963733 69964025 -15731729 + AluSx SINE Alu 1 296 -16 344 250 56 0 chr15 69964318 69964426 -15731328 - L1MC4 LINE L1 0 8042 7929 1151 224 25 0 chr15 69964544 69964785 -15730969 - L1MC4 LINE L1 -1089 6953 6707 664 195 43 60 chr15 69964786 69964971 -15730783 - L1MC4 LINE L1 -1982 5826 5645 219 237 25 51 chr15 69965620 69965738 -15730016 + T-rich Low_complexity Low_complexity 6 120 0 437 209 104 8 chr15 69966191 69966325 -15729429 - L1ME4a LINE L1 -3 6118 5972 26 30 0 0 chr15 69966369 69966402 -15729352 + AT_rich Low_complexity Low_complexity 1 33 0 1770 133 50 4 chr15 69966406 69966685 -15729069 - AluSx SINE Alu 0 312 21 304 22 22 22 chr15 69966687 69966733 -15729021 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2253 99 10 29 chr15 69967079 69967393 -15728361 - AluSc SINE Alu -1 308 1 33 0 0 0 chr15 69969173 69969206 -15726548 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr15 69969223 69969248 -15726506 + AT_rich Low_complexity Low_complexity 1 25 0 1058 132 0 36 chr15 69969419 69969586 -15726168 - AluSg/x SINE Alu -18 294 134 2163 93 13 26 chr15 69969586 69969888 -15725866 - AluSq SINE Alu -15 298 1 418 223 118 27 chr15 69970000 69970208 -15725546 + MIR SINE MIR 16 248 -14 2088 99 24 7 chr15 69973456 69973748 -15722006 + AluSx SINE Alu 1 297 -15 2397 83 0 16 chr15 69974146 69974458 -15721296 + AluSc SINE Alu 1 307 -2 2336 93 0 0 chr15 69974467 69974758 -15720996 + AluY SINE Alu 1 291 -20 626 179 24 8 chr15 69974912 69975035 -15720719 + L1MC4 LINE L1 7918 8042 0 2237 120 0 0 chr15 69975036 69975345 -15720409 - AluSx SINE Alu -3 309 1 874 157 36 0 chr15 69975446 69975586 -15720168 + FAM SINE Alu 30 174 -11 277 221 0 23 chr15 69975586 69975672 -15720082 + GA-rich Low_complexity Low_complexity 1 84 0 266 294 53 65 chr15 69975826 69975923 -15719831 - MLT1L LTR MaLR -221 394 297 2405 64 0 3 chr15 69975923 69976234 -15719520 - AluY SINE Alu 0 310 1 266 294 53 65 chr15 69976234 69976305 -15719449 - MLT1L LTR MaLR -318 297 227 347 241 13 0 chr15 69976650 69976729 -15719025 + L2 LINE L2 3234 3313 0 2063 230 43 52 chr15 69976821 69977273 -15718481 - L1MC4 LINE L1 -1 8041 7595 180 97 0 0 chr15 69977273 69977304 -15718450 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2063 230 43 52 chr15 69977304 69977460 -15718294 - L1MC4 LINE L1 -447 7595 7439 1747 204 67 3 chr15 69978146 69978489 -15717265 - MLT1A1 LTR MaLR 0 365 1 288 371 44 0 chr15 69978686 69978845 -15716909 - MER102b DNA MER1_type -30 311 146 750 97 0 0 chr15 69978881 69978974 -15716780 + AluSc SINE Alu 76 168 -141 699 107 10 10 chr15 69979074 69979177 -15716577 + MER20 DNA MER1_type 117 219 0 2228 248 67 31 chr15 69980520 69981392 -15714362 - L1MDa LINE L1 -4268 2272 1370 1009 234 24 16 chr15 69981392 69981640 -15714114 + MLT1C LTR MaLR 212 461 -6 678 268 82 43 chr15 69983316 69983995 -15711759 + L1MEd LINE L1 922 1669 -4641 463 278 85 52 chr15 69984402 69984650 -15711104 + MIR SINE MIR 5 260 -2 9706 139 10 20 chr15 69986048 69987589 -15708165 + HUERS-P3b LTR ERV1 1117 2642 -4776 1982 188 36 3 chr15 69987589 69987950 -15707804 - LTR8 LTR ERV1 -250 441 69 207 0 0 0 chr15 69989425 69989448 -15706306 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 42 65 0 0 chr15 69991489 69991566 -15704188 + AT_rich Low_complexity Low_complexity 1 77 0 2448 63 3 3 chr15 69991791 69992093 -15703661 + AluSp SINE Alu 1 302 -11 195 208 75 38 chr15 69992459 69992512 -15703242 + L2 LINE L2 3008 3062 -251 28 109 0 0 chr15 69993441 69993496 -15702258 + GC_rich Low_complexity Low_complexity 1 55 0 2059 127 3 19 chr15 69995198 69995512 -15700242 - AluSc SINE Alu 0 309 1 276 199 16 57 chr15 69995960 69996048 -15699706 + MIR SINE MIR 100 184 -62 1565 147 0 46 chr15 69997346 69997631 -15698123 + AluJb SINE Alu 3 274 -38 205 176 0 0 chr15 69998671 69998705 -15697049 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 511 221 22 22 chr15 69999506 69999642 -15696112 + MIR SINE MIR 92 227 -35 196 176 59 59 chr15 70000336 70000404 -15695350 + L2 LINE L2 2608 2675 -639 264 358 157 22 chr15 70000530 70000899 -15694855 + L2 LINE L2 2843 3261 -11 840 195 19 0 chr15 70001011 70001170 -15694584 + MER5A DNA MER1_type 28 189 0 4847 147 6 4 chr15 70001380 70002558 -15693196 + L1MA3 LINE L1 4773 5952 -353 1987 112 0 8 chr15 70002558 70002816 -15692938 + AluSq SINE Alu 1 256 -57 258 331 44 101 chr15 70002917 70003213 -15692541 - L2 LINE L2 -28 3244 2966 581 81 27 9 chr15 70003400 70003511 -15692243 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 506 281 132 54 chr15 70003737 70004726 -15691028 + L2 LINE L2 2245 3297 -16 432 301 91 6 chr15 70005284 70005460 -15690294 + MIR SINE MIR 67 257 -5 2335 179 43 71 chr15 70005786 70006416 -15689338 + LTR9 LTR ERV1 1 612 0 342 270 0 0 chr15 70006876 70006976 -15688778 + LTR30 LTR ERV1 525 624 -98 758 153 25 0 chr15 70006979 70007097 -15688657 + LTR12 LTR ERV1 362 482 -232 265 281 148 50 chr15 70007106 70007700 -15688054 - L1M4 LINE L1 -1443 4703 4052 22 56 0 0 chr15 70010365 70010401 -15685353 + AT_rich Low_complexity Low_complexity 1 36 0 1355 93 6 0 chr15 70010401 70010583 -15685171 + AluY SINE Alu 127 309 -2 353 257 20 13 chr15 70014509 70014540 -15681214 + (TA)n Simple_repeat Simple_repeat 1 30 -123 1600 184 126 8 chr15 70014540 70014914 -15680840 + MER47B DNA MER2_type 1 418 0 353 257 20 13 chr15 70014914 70015034 -15680720 + (TA)n Simple_repeat Simple_repeat 30 153 0 3419 117 28 2 chr15 70015240 70015746 -15680008 + L1PB3 LINE L1 5636 6154 0 3058 118 13 8 chr15 70015871 70016344 -15679410 + L1MC1 LINE L1 5859 6333 0 30 27 0 0 chr15 70016349 70016386 -15679368 + AT_rich Low_complexity Low_complexity 1 37 0 313 260 0 0 chr15 70016473 70016546 -15679208 + HsTC2 DNA Tc2 1823 1895 -3 8558 29 2 11 chr15 70017277 70019052 -15676702 + L1PA4 LINE L1 4388 6155 0 502 227 15 15 chr15 70019544 70019676 -15676078 + L1ME LINE L1 4254 4385 -1761 289 116 0 0 chr15 70020194 70020237 -15675517 - MLT1F1 LTR MaLR -3 564 522 232 256 169 26 chr15 70020763 70020958 -15674796 + L1ME LINE L1 5296 5518 -646 1593 148 34 62 chr15 70021466 70022004 -15673750 - L1M2 LINE L1 -744 5402 5037 279 275 84 70 chr15 70022317 70022459 -15673295 + L2 LINE L2 3129 3272 0 4362 232 29 56 chr15 70022578 70024363 -15671391 + L1PA12 LINE L1 7 3051 -4523 423 56 0 0 chr15 70024898 70024952 -15670802 + (TA)n Simple_repeat Simple_repeat 1 54 0 2113 110 0 3 chr15 70027455 70027773 -15667981 + AluSx SINE Alu 1 317 0 231 36 0 0 chr15 70027980 70028008 -15667746 + (TTG)n Simple_repeat Simple_repeat 2 29 0 529 110 123 18 chr15 70028012 70028119 -15667635 - L1PB1 LINE L1 -212 5939 5840 201 323 32 0 chr15 70028196 70028289 -15667465 + MIR3 SINE MIR 110 205 -3 252 224 0 0 chr15 70029246 70029313 -15666441 + (TA)n Simple_repeat Simple_repeat 2 68 0 2488 64 0 3 chr15 70030101 70030399 -15665355 - AluY SINE Alu -14 297 1 254 204 0 0 chr15 70031068 70031117 -15664637 - MER58B DNA MER1_type 0 341 293 1933 163 28 63 chr15 70031699 70032128 -15663626 - MLT2D LTR ERVL 0 414 1 362 189 14 40 chr15 70033134 70033208 -15662546 - MER51A LTR ERV1 -81 553 482 260 169 17 17 chr15 70033212 70033271 -15662483 - L1MC4 LINE L1 -1027 7015 6957 235 236 155 34 chr15 70033321 70033337 -15662417 - L1MA10 LINE L1 0 6334 6319 1255 174 147 25 chr15 70033337 70033617 -15662137 - L1ME1 LINE L1 -6 6160 5833 1673 189 61 48 chr15 70033617 70034078 -15661676 - MLT1C LTR MaLR 0 467 1 1255 174 147 25 chr15 70034078 70034124 -15661630 - L1ME1 LINE L1 -333 5833 5794 714 281 82 75 chr15 70034584 70034772 -15660982 + MLT1H LTR MaLR 9 194 -355 2449 66 0 10 chr15 70034772 70035076 -15660678 + AluY SINE Alu 1 301 -10 714 281 82 75 chr15 70035076 70035424 -15660330 + MLT1H LTR MaLR 194 549 0 421 243 11 73 chr15 70036705 70036882 -15658872 + L2 LINE L2 3148 3313 0 180 0 0 0 chr15 70037055 70037075 -15658679 + (CTTTG)n Simple_repeat Simple_repeat 1 20 0 1522 37 0 21 chr15 70037466 70037654 -15658100 + L1PA7 LINE L1 5941 6124 -30 589 238 39 70 chr15 70037654 70037969 -15657785 + MER97a DNA MER1_type? 96 450 -640 3344 141 18 13 chr15 70037969 70038101 -15657653 - LTR38 LTR ERV1 0 556 426 2439 104 10 36 chr15 70038101 70038486 -15657268 - THE1C LTR MaLR 0 375 1 3344 141 18 13 chr15 70038486 70038906 -15656848 - LTR38 LTR ERV1 -130 426 1 405 375 30 8 chr15 70039039 70039306 -15656448 - L3 LINE CR1 -755 822 550 258 140 194 21 chr15 70039349 70039442 -15656312 - L1ME4a LINE L1 -18 6103 5995 2011 153 0 3 chr15 70039442 70039742 -15656012 - AluSx SINE Alu -11 301 3 1352 165 112 3 chr15 70039786 70040071 -15655683 + MER33 DNA MER1_type 3 318 -6 985 248 144 19 chr15 70040264 70040687 -15655067 + MLT1K LTR MaLR 1 476 0 1538 201 53 13 chr15 70041061 70041365 -15654389 - MER58B DNA MER1_type -25 316 1 414 248 64 13 chr15 70043540 70043556 -15652198 - L1MA10 LINE L1 0 6334 6319 2062 201 40 110 chr15 70043556 70043824 -15651930 - L1ME1 LINE L1 -5 6161 5876 357 43 0 0 chr15 70043824 70043870 -15651884 + MADE1 DNA Mariner 35 80 0 2062 201 40 110 chr15 70043870 70044276 -15651478 - L1ME1 LINE L1 -290 5876 5492 357 264 233 16 chr15 70044468 70044661 -15651093 + MIR SINE MIR 18 252 -10 238 130 43 0 chr15 70044790 70044836 -15650918 - L1ME4a LINE L1 -4 6117 6070 2581 62 0 10 chr15 70044928 70045237 -15650517 + AluY SINE Alu 1 306 -5 373 340 109 25 chr15 70045555 70045958 -15649796 + L1MEd LINE L1 561 997 -5122 1987 163 44 14 chr15 70046441 70046804 -15648950 - MSTB1 LTR MaLR -2 430 57 363 169 84 0 chr15 70046982 70047065 -15648689 + MIR SINE MIR 113 202 -60 943 296 159 7 chr15 70047077 70047978 -15647776 + L2 LINE L2 2266 3313 0 212 225 0 42 chr15 70047967 70048038 -15647716 + MIR SINE MIR 195 262 0 * 264 227 67 113 chr15 70048164 70048285 -15647469 - MIR SINE MIR -65 197 87 1959 137 59 14 chr15 70048285 70048642 -15647112 + THE1C LTR MaLR 3 375 0 264 227 67 113 chr15 70048642 70048714 -15647040 - MIR SINE MIR -175 87 13 579 194 47 39 chr15 70049879 70050008 -15645746 + MER20 DNA MER1_type 1 130 -89 1537 142 0 0 chr15 70050108 70050374 -15645380 + AluJb SINE Alu 66 331 0 317 224 0 0 chr15 70050374 70050441 -15645313 - L1MC4 LINE L1 -773 7269 7203 1097 167 130 22 chr15 70050449 70050514 -15645240 - L1MC4 LINE L1 -961 7081 7024 3219 110 44 25 chr15 70050514 70050996 -15644758 + LTR22B LTR ERVK 2 492 0 1097 167 130 22 chr15 70050996 70051200 -15644554 - L1MC4 LINE L1 -1018 7024 6783 2073 134 6 10 chr15 70051239 70051552 -15644202 - AluSx SINE Alu 0 312 1 506 183 98 72 chr15 70052074 70052148 -15643606 + MER103 DNA DNA 8 79 -87 2172 127 3 3 chr15 70052148 70052448 -15643306 - AluSx SINE Alu -12 300 1 506 183 98 72 chr15 70052448 70052526 -15643228 + MER103 DNA DNA 79 164 -2 216 300 138 23 chr15 70052581 70052711 -15643043 + L2 LINE L2 2503 2647 -667 2067 95 3 0 chr15 70052712 70052995 -15642759 - pTR5 LTR ERV1 -2053 385 102 29 28 0 0 chr15 70053813 70053849 -15641905 + AT_rich Low_complexity Low_complexity 1 36 0 226 170 21 117 chr15 70054102 70054196 -15641558 - MIR SINE MIR 0 262 178 319 233 23 101 chr15 70055264 70055393 -15640361 - MIR3 SINE MIR -1 207 89 340 315 8 23 chr15 70056340 70056470 -15639284 + MLT1J LTR MaLR 165 292 -219 1278 122 22 0 chr15 70056470 70056650 -15639104 + AluJo SINE Alu 1 184 -128 335 284 28 9 chr15 70056657 70056766 -15638988 - HAL1 LINE L1 -865 1642 1532 647 177 0 0 chr15 70056773 70056869 -15638885 + AluJo SINE Alu 191 286 -26 770 231 50 11 chr15 70056881 70057063 -15638691 + MLT1J LTR MaLR 286 474 -37 2273 113 0 0 chr15 70057212 70057513 -15638241 - AluSg SINE Alu -9 301 1 923 279 38 38 chr15 70057601 70057967 -15637787 - HAL1 LINE L1 -1816 691 326 1342 161 17 25 chr15 70058187 70058423 -15637331 + AluJo SINE Alu 1 234 -78 248 219 112 70 chr15 70058527 70058742 -15637012 - L1MEd LINE L1 -5242 877 654 1456 176 0 15 chr15 70058882 70059143 -15636611 - AluJo SINE Alu -45 267 11 890 201 70 82 chr15 70059261 70059308 -15636446 - LTR40b LTR ERVL -16 446 400 1839 148 3 23 chr15 70059308 70059612 -15636142 - AluJb SINE Alu -14 298 1 890 201 70 82 chr15 70059612 70059808 -15635946 - LTR40b LTR ERVL -62 400 206 266 304 87 91 chr15 70060088 70060187 -15635567 + L2 LINE L2 3044 3142 -130 1152 291 77 19 chr15 70060187 70060706 -15635048 + MLT1H LTR MaLR 1 549 0 266 304 87 91 chr15 70060706 70060836 -15634918 + L2 LINE L2 3142 3272 0 554 274 32 43 chr15 70061953 70062139 -15633615 + L2 LINE L2 3126 3309 -4 309 250 83 21 chr15 70062653 70062749 -15633005 + MER91C DNA MER1_type 38 139 -1 1854 210 20 12 chr15 70062919 70063328 -15632426 - L1M4c LINE L1 -4627 1757 1346 465 290 17 23 chr15 70063346 70063522 -15632232 + HAL1 LINE L1 2325 2499 -8 1413 253 195 9 chr15 70063546 70064095 -15631659 + L1MC4a LINE L1 5324 5974 -1834 263 221 195 0 chr15 70064726 70064803 -15630951 + Charlie2 DNA MER1_type 5 96 -2686 677 291 105 63 chr15 70064911 70065719 -15630035 - L1M4 LINE L1 -745 5401 4629 601 244 24 0 chr15 70065719 70065846 -15629908 - FLAM_A SINE Alu -2 131 2 677 291 105 63 chr15 70065846 70066040 -15629714 - L1M4 LINE L1 -1517 4629 4445 1279 278 58 59 chr15 70066040 70066630 -15629124 + MLT1G LTR MaLR 2 590 0 677 291 105 63 chr15 70066630 70066728 -15629026 - L1M4 LINE L1 -1701 4445 4253 679 238 47 6 chr15 70066740 70066912 -15628842 - MER58A DNA MER1_type 0 224 46 800 168 10 64 chr15 70067038 70067240 -15628514 + MER106A DNA MER1_type 35 225 -11 3565 226 80 30 chr15 70067805 70068834 -15626920 + L1MB7 LINE L1 3268 4347 -1799 2491 207 33 7 chr15 70068831 70069401 -15626353 + L1MB7 LINE L1 4706 5290 -856 * 2228 187 19 30 chr15 70069398 70069451 -15626303 + L1MB7 LINE L1 5699 5751 -433 * 1495 209 99 58 chr15 70069451 70069935 -15625819 + MLT1D LTR MaLR 1 504 -1 2228 187 19 30 chr15 70069935 70070352 -15625402 + L1MB7 LINE L1 5751 6164 -20 552 187 9 9 chr15 70070359 70070466 -15625288 - MLT1F1 LTR MaLR -458 109 3 319 290 145 0 chr15 70070601 70070794 -15624960 + L1MCa LINE L1 1444 1664 -4762 702 172 0 0 chr15 70070798 70070914 -15624840 + L1MD3 LINE L1 7730 7845 -150 749 105 11 0 chr15 70070914 70071009 -15624745 + AluSp SINE Alu 82 177 -136 527 275 107 68 chr15 70071125 70071516 -15624238 - L1M4 LINE L1 -2094 4052 3633 2797 97 17 6 chr15 70071516 70071876 -15623878 - THE1B LTR MaLR 0 364 1 527 275 107 68 chr15 70071876 70072026 -15623728 - L1M4 LINE L1 -2513 3633 3490 2684 234 110 33 chr15 70072047 70072835 -15622919 + MER21B LTR ERV1 15 863 0 316 291 85 34 chr15 70072835 70073389 -15622365 - L1M4 LINE L1 -2652 3494 2913 699 244 111 44 chr15 70073401 70073671 -15622083 - L1ME3A LINE L1 -1 6169 5882 951 252 35 10 chr15 70073673 70073963 -15621791 - L1ME3A LINE L1 -200 5970 5674 1879 157 10 3 chr15 70074326 70074625 -15621129 + AluJb SINE Alu 5 305 -7 1167 217 221 74 chr15 70074750 70074961 -15620793 - Charlie2a DNA MER1_type -17 2845 2666 184 29 29 29 chr15 70074961 70074995 -15620759 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2046 109 14 7 chr15 70074997 70075280 -15620474 - AluSx SINE Alu -27 285 1 1167 217 221 74 chr15 70075280 70075493 -15620261 - Charlie2a DNA MER1_type -196 2666 2486 2150 77 26 55 chr15 70075493 70075803 -15619951 - AluSg SINE Alu -9 301 1 1167 217 221 74 chr15 70075803 70076281 -15619473 - Charlie2a DNA MER1_type -376 2486 2080 2344 78 0 0 chr15 70076281 70076577 -15619177 - AluSc SINE Alu -8 301 6 1167 217 221 74 chr15 70076577 70076695 -15619059 - Charlie2a DNA MER1_type -782 2080 1669 586 284 63 0 chr15 70076698 70076888 -15618866 - L1MC5 LINE L1 -47 7914 7713 804 241 35 6 chr15 70076911 70077085 -15618669 + MER20 DNA MER1_type 34 212 -7 230 229 45 85 chr15 70077144 70077345 -15618409 - L1MC5 LINE L1 -258 7703 7511 2214 108 0 13 chr15 70077345 70077652 -15618102 - AluSx SINE Alu -9 303 1 1065 198 11 71 chr15 70077668 70077936 -15617818 - L1MC5 LINE L1 -1057 6904 6653 1873 164 3 3 chr15 70077937 70078241 -15617513 - AluSx SINE Alu -8 304 1 180 0 0 0 chr15 70078514 70078534 -15617220 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1992 136 44 3 chr15 70078537 70078831 -15616923 - AluSc SINE Alu -3 306 1 938 150 0 0 chr15 70078845 70078978 -15616776 - FLAM_C SINE Alu 0 133 1 746 211 43 65 chr15 70078980 70079259 -15616495 - L1MC5 LINE L1 -766 7195 6923 1863 121 61 4 chr15 70079300 70079580 -15616174 - AluSx SINE Alu -16 296 1 1986 92 54 24 chr15 70079586 70079915 -15615839 - AluSp SINE Alu 0 313 1 604 224 13 59 chr15 70080022 70080174 -15615580 + MER63A DNA MER1_type 43 187 -23 2307 103 0 0 chr15 70080177 70080477 -15615277 - AluSq SINE Alu -13 300 1 1287 228 187 11 chr15 70080596 70081039 -15614715 + LTR33 LTR ERVL 1 521 0 1368 182 3 38 chr15 70081042 70081388 -15614366 + pTR5 LTR ERV1 740 1073 -1365 287 325 141 16 chr15 70082328 70082519 -15613235 - MIR SINE MIR -18 244 30 2373 50 0 7 chr15 70082977 70083293 -15612461 + AluY SINE Alu 1 314 0 392 263 69 44 chr15 70083349 70083509 -15612245 + MER103 DNA DNA 3 166 0 1048 75 12 0 chr15 70085900 70086060 -15609694 + (CCAA)n Simple_repeat Simple_repeat 2 163 0 890 159 0 0 chr15 70087215 70087347 -15608407 - FLAM_C SINE Alu 0 133 2 249 268 28 0 chr15 70088284 70088355 -15607399 + Charlie8 DNA MER1_type 2341 2413 -4 254 250 0 0 chr15 70088527 70088579 -15607175 - L3 LINE CR1 -50 1527 1476 2522 69 0 3 chr15 70089502 70089807 -15605947 + AluSc SINE Alu 1 304 -5 2327 64 0 55 chr15 70089807 70090133 -15605621 + AluY SINE Alu 1 308 -3 370 318 30 45 chr15 70090288 70090420 -15605334 - L2 LINE L2 -4 3268 3139 487 290 202 42 chr15 70090609 70091170 -15604584 - L2 LINE L2 -445 2869 2399 880 216 74 105 chr15 70091170 70091242 -15604512 + MER102b DNA MER1_type 1 74 -1354 276 30 0 0 chr15 70091242 70091275 -15604479 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 880 216 74 105 chr15 70091275 70091554 -15604200 + MER102b DNA MER1_type 74 341 0 487 290 202 42 chr15 70091554 70091572 -15604182 - L2 LINE L2 -915 2399 2385 2539 69 0 3 chr15 70091572 70091878 -15603876 + AluSp SINE Alu 1 305 -8 487 290 202 42 chr15 70091878 70092256 -15603498 - L2 LINE L2 -929 2385 1757 571 246 106 19 chr15 70092444 70092665 -15603089 - MIR SINE MIR -16 246 6 1353 211 27 27 chr15 70092716 70092948 -15602806 - L1M4 LINE L1 -1227 4919 4685 1578 118 185 8 chr15 70092948 70093202 -15602552 + AluJb SINE Alu 1 299 -3 1353 211 27 27 chr15 70093202 70093305 -15602449 - L1M4 LINE L1 -1460 4686 4584 632 278 113 12 chr15 70093465 70093760 -15601994 - Charlie8 DNA MER1_type -2142 275 3 266 256 100 22 chr15 70093760 70093850 -15601904 + MIR3 SINE MIR 88 184 -24 2245 69 17 7 chr15 70094093 70094384 -15601370 - AluY SINE Alu -17 294 1 1340 141 40 0 chr15 70094384 70094582 -15601172 - AluSg/x SINE Alu -22 290 85 212 342 40 0 chr15 70094761 70094837 -15600917 + L2 LINE L2 3201 3279 -34 418 261 100 39 chr15 70095200 70095430 -15600324 + L1MC5 LINE L1 7701 7944 -17 235 317 96 12 chr15 70095586 70095753 -15600001 + MIR SINE MIR 63 243 -19 311 306 41 8 chr15 70096120 70096241 -15599513 + L1ME LINE L1 5544 5668 -453 1115 153 58 156 chr15 70097036 70097196 -15598558 - MER33 DNA MER1_type -2261 324 217 2295 104 7 0 chr15 70097196 70097503 -15598251 + AluSx SINE Alu 1 309 -3 1115 153 58 156 chr15 70097503 70097701 -15598053 - MER33 DNA MER1_type -2368 217 1 2331 108 7 0 chr15 70098485 70098790 -15596964 - AluSx SINE Alu -5 307 1 216 0 0 0 chr15 70098812 70098836 -15596918 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2277 111 0 0 chr15 70098888 70099185 -15596569 - AluSx SINE Alu -15 297 1 1734 209 105 60 chr15 70099186 70099721 -15596033 - L1MC4 LINE L1 -135 7907 7349 457 133 0 0 chr15 70099723 70099783 -15595971 + AluS SINE Alu 3 62 -247 956 157 35 29 chr15 70300449 70300621 -15395133 + AluSq SINE Alu 121 293 -20 2083 126 0 10 chr15 70300633 70300926 -15394828 + AluSx SINE Alu 1 290 -22 230 245 0 0 chr15 70300939 70300988 -15394766 - L1MC4 LINE L1 -607 7435 7387 233 200 65 32 chr15 70304369 70304524 -15391230 + (TTGG)n Simple_repeat Simple_repeat 4 163 0 * 395 192 26 26 chr15 70304479 70304696 -15391058 + (TGG)n Simple_repeat Simple_repeat 1 217 0 213 279 8 25 chr15 70304685 70304807 -15390947 + (TGGG)n Simple_repeat Simple_repeat 4 123 0 * 317 246 47 18 chr15 70304935 70305106 -15390648 + (GGGTG)n Simple_repeat Simple_repeat 1 176 0 218 163 5 65 chr15 70308416 70308600 -15387154 + GA-rich Low_complexity Low_complexity 1 173 0 298 160 6 55 chr15 70308620 70308801 -15386953 + GA-rich Low_complexity Low_complexity 1 172 0 271 293 21 14 chr15 70308808 70308948 -15386806 + G-rich Low_complexity Low_complexity 4 144 0 1719 165 6 50 chr15 70311529 70311850 -15383904 + AluSx SINE Alu 1 307 -5 486 269 140 34 chr15 70311899 70312163 -15383591 - MLT1I LTR MaLR -17 392 101 279 202 75 43 chr15 70312435 70312529 -15383225 - MIR SINE MIR -50 212 116 2446 95 0 0 chr15 70312618 70312923 -15382831 - AluSg SINE Alu -5 305 1 1564 182 7 30 chr15 70312925 70313227 -15382527 - AluJo SINE Alu -17 295 1 2193 116 10 0 chr15 70313273 70313566 -15382188 + AluSx SINE Alu 1 296 -16 1796 126 78 4 chr15 70313577 70313847 -15381907 + AluSx SINE Alu 1 290 -22 262 217 50 0 chr15 70313849 70313909 -15381845 - L1MC4 LINE L1 -593 7449 7387 372 22 0 0 chr15 70314597 70314642 -15381112 + (TG)n Simple_repeat Simple_repeat 2 46 0 1022 241 3 52 chr15 70314644 70314687 -15381067 + MLT1J LTR MaLR 1 45 -466 2357 96 0 3 chr15 70314687 70314988 -15380766 - AluSx SINE Alu -12 300 1 1022 241 3 52 chr15 70314988 70315251 -15380503 + MLT1J LTR MaLR 45 292 -219 1300 122 22 0 chr15 70315251 70315431 -15380323 + AluJo SINE Alu 1 184 -128 314 284 28 9 chr15 70315438 70315547 -15380207 - HAL1 LINE L1 -865 1642 1532 647 174 0 0 chr15 70315554 70315652 -15380102 + AluJo SINE Alu 191 288 -24 722 231 50 11 chr15 70315662 70315844 -15379910 + MLT1J LTR MaLR 286 474 -37 2299 123 0 0 chr15 70315985 70316294 -15379460 - AluSg SINE Alu -1 309 1 850 279 38 38 chr15 70316382 70316748 -15379006 - HAL1 LINE L1 -1816 691 326 1379 163 17 25 chr15 70316969 70317208 -15378546 + AluJo SINE Alu 1 237 -75 569 264 64 77 chr15 70317226 70317524 -15378230 - L1MEd LINE L1 -5192 927 654 1668 181 7 14 chr15 70317642 70317923 -15377831 - AluJo SINE Alu -23 289 11 303 301 108 42 chr15 70317943 70318038 -15377716 - L1MEd LINE L1 -5650 469 382 1343 186 160 55 chr15 70318038 70318087 -15377667 - LTR40c LTR ERVL -2 463 421 1882 148 3 23 chr15 70318087 70318391 -15377363 - AluJb SINE Alu -14 298 1 1343 186 160 55 chr15 70318391 70318760 -15376994 - LTR40c LTR ERVL -44 421 1 303 301 108 42 chr15 70318760 70318877 -15376877 - L1MEd LINE L1 -5737 382 243 * 686 134 90 2 chr15 70318863 70318999 -15376755 + L1MC3 LINE L1 7480 7824 -171 2342 101 3 0 chr15 70319119 70319415 -15376339 - AluSq SINE Alu -16 297 1 2286 115 0 16 chr15 70319666 70319978 -15375776 + AluSp SINE Alu 1 307 -6 2148 95 44 0 chr15 70319993 70320287 -15375467 + AluSq SINE Alu 5 311 -2 2408 64 0 3 chr15 70320531 70320842 -15374912 + AluY SINE Alu 1 310 0 241 261 58 0 chr15 70320870 70320939 -15374815 + MLT1L LTR MaLR 322 394 -221 199 240 0 27 chr15 70321093 70321168 -15374586 + CT-rich Low_complexity Low_complexity 4 76 0 896 179 33 0 chr15 70321168 70321319 -15374435 - FAM SINE Alu 0 49 1 2269 120 0 0 chr15 70321420 70321729 -15374025 + AluSx SINE Alu 1 309 -3 2892 162 66 40 chr15 70321730 70322067 -15373687 - L1MC4 LINE L1 0 8042 7715 2284 116 13 0 chr15 70322067 70322370 -15373384 - AluSx SINE Alu -1 311 5 2892 162 66 40 chr15 70322370 70322730 -15373024 - L1MC4 LINE L1 -327 7715 7327 1803 104 0 28 chr15 70322731 70322982 -15372772 - AluSg SINE Alu -4 306 63 1090 177 0 25 chr15 70323082 70323285 -15372469 + AluJb SINE Alu 115 312 0 484 290 37 25 chr15 70323753 70323915 -15371839 - L3 LINE CR1 -547 1030 867 2151 114 20 3 chr15 70324222 70324521 -15371233 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr15 70324532 70324553 -15371201 + AT_rich Low_complexity Low_complexity 1 21 0 532 327 13 7 chr15 70325178 70325331 -15370423 - MIR3 SINE MIR -52 156 3 1900 172 0 10 chr15 70325435 70325743 -15370011 + AluJo SINE Alu 1 305 -7 2251 114 3 0 chr15 70326343 70326641 -15369113 + AluSq SINE Alu 1 299 -14 905 126 0 22 chr15 70327738 70327873 -15367881 + FLAM_C SINE Alu 1 132 -1 196 298 35 0 chr15 70328054 70328111 -15367643 + L2 LINE L2 3206 3264 -8 295 239 76 0 chr15 70328136 70328228 -15367526 + Charlie7 DNA MER1_type 8 106 -2506 305 236 64 73 chr15 70328353 70328463 -15367291 + L1MD3 LINE L1 7878 7986 -9 238 266 13 0 chr15 70329149 70329228 -15366526 + L1MC5 LINE L1 7806 7885 -76 276 333 37 7 chr15 70329724 70329859 -15365895 - L3 LINE CR1 -83 1494 1356 25 31 0 0 chr15 70329942 70329974 -15365780 + AT_rich Low_complexity Low_complexity 1 32 0 2081 115 16 19 chr15 70330151 70330464 -15365290 + AluSx SINE Alu 1 312 0 2385 102 3 0 chr15 70330939 70331243 -15364511 + AluSx SINE Alu 3 307 -5 1760 167 47 38 chr15 70331551 70331892 -15363862 + MER2 DNA MER2_type 1 344 0 2130 126 0 23 chr15 70332311 70332613 -15363141 - AluSx SINE Alu -17 295 1 233 148 0 37 chr15 70332613 70332660 -15363094 - L1MB3 LINE L1 -41 6142 6096 279 202 75 43 chr15 70333092 70333186 -15362568 - MIR SINE MIR -50 212 116 1603 134 157 0 chr15 70333281 70333542 -15362212 - AluSx SINE Alu 0 302 1 1839 162 0 32 chr15 70333833 70334147 -15361607 - AluJo SINE Alu -8 304 1 915 152 0 0 chr15 70334165 70334303 -15361451 - AluJo SINE Alu -174 138 1 1618 148 80 4 chr15 70334424 70334688 -15361066 + AluSx SINE Alu 7 290 -22 262 217 50 0 chr15 70334690 70334750 -15361004 - L1MC4 LINE L1 -593 7449 7387 684 145 58 0 chr15 70335132 70335270 -15360484 + L1MA9 LINE L1 6163 6308 -4 256 292 163 43 chr15 70335661 70335756 -15359998 - Charlie8 DNA MER1_type -2173 244 162 2511 73 0 7 chr15 70335756 70336059 -15359695 + AluSx SINE Alu 5 305 -7 256 292 163 43 chr15 70336059 70336172 -15359582 - Charlie8 DNA MER1_type -2255 162 11 391 254 113 7 chr15 70337513 70337655 -15358099 - MIR SINE MIR -7 255 99 2392 66 38 0 chr15 70338174 70338462 -15357292 + AluY SINE Alu 1 299 -12 431 298 72 65 chr15 70338676 70338968 -15356786 - L2 LINE L2 0 3272 2979 667 248 38 6 chr15 70338970 70339127 -15356627 - L2 LINE L2 -5 3267 3106 244 289 18 61 chr15 70339139 70339253 -15356501 - L2 LINE L2 -268 3004 2896 412 232 120 0 chr15 70340441 70340583 -15355171 - MER103 DNA DNA -5 161 3 304 330 54 54 chr15 70340611 70340872 -15354882 + HAL1 LINE L1 1527 1787 -720 419 351 53 27 chr15 70341420 70341719 -15354035 - L2 LINE L2 -831 2483 2177 184 139 47 47 chr15 70342225 70342268 -15353486 + L2 LINE L2 3227 3269 -3 494 241 149 48 chr15 70343383 70343611 -15352143 + MIR SINE MIR 2 252 -10 2250 86 3 30 chr15 70344255 70344558 -15351196 + AluSp SINE Alu 2 296 -17 325 275 190 34 chr15 70344623 70344892 -15350862 - MLT1K LTR MaLR -122 466 156 787 138 0 8 chr15 70345411 70345567 -15350187 + FAM SINE Alu 1 69 0 2241 122 0 0 chr15 70345578 70345873 -15349881 + AluSc SINE Alu 1 295 -14 2616 56 0 0 chr15 70346046 70346350 -15349404 + AluY SINE Alu 1 304 -7 183 251 150 60 chr15 70347061 70347228 -15348526 - MIR3 SINE MIR -9 199 18 585 250 110 31 chr15 70347474 70347666 -15348088 + MIR SINE MIR 7 208 -54 283 294 183 33 chr15 70347676 70347856 -15347898 - MIR SINE MIR -3 259 53 1710 156 38 7 chr15 70347863 70348151 -15347603 + AluJb SINE Alu 1 297 -15 329 260 133 53 chr15 70348166 70348451 -15347303 - L1MC5 LINE L1 -50 7911 7604 209 189 19 57 chr15 70348501 70348554 -15347200 - MIR SINE MIR -142 66 16 622 156 112 42 chr15 70348803 70348856 -15346898 - Charlie1 DNA MER1_type -1 2760 2712 2158 122 30 0 chr15 70348856 70349160 -15346594 + AluSq SINE Alu 1 313 0 2393 106 0 0 chr15 70349162 70349474 -15346280 + AluSx SINE Alu 1 312 0 622 156 112 42 chr15 70349474 70349678 -15346076 - Charlie1 DNA MER1_type -49 2712 2475 464 309 26 0 chr15 70349676 70349852 -15345902 - Charlie1 DNA MER1_type -302 2459 37 * 225 328 0 0 chr15 70350624 70350682 -15345072 + L2 LINE L2 2619 2676 -638 314 297 76 66 chr15 70351114 70351611 -15344143 + L2 LINE L2 2704 3240 -32 513 363 48 15 chr15 70354447 70354780 -15340974 + L2 LINE L2 2403 2746 -568 574 145 0 15 chr15 70354862 70354993 -15340761 + (TCC)n Simple_repeat Simple_repeat 2 130 0 407 242 358 16 chr15 70355046 70355236 -15340518 + MIR SINE MIR 5 259 -3 201 167 42 21 chr15 70355277 70355325 -15340429 + L2 LINE L2 3019 3067 -205 428 310 6 47 chr15 70355741 70355799 -15339955 + MER5A DNA MER1_type 13 72 -117 2201 107 0 3 chr15 70355799 70356109 -15339645 + AluSx SINE Alu 1 309 -3 428 310 6 47 chr15 70356109 70356221 -15339533 + MER5A DNA MER1_type 72 176 -13 242 183 122 73 chr15 70356403 70356485 -15339269 + L2 LINE L2 3184 3269 -3 2180 98 3 0 chr15 70357681 70357978 -15337776 + AluSx SINE Alu 1 298 -14 237 139 0 0 chr15 70357978 70358021 -15337733 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr15 70358267 70358295 -15337459 + AT_rich Low_complexity Low_complexity 1 28 0 1561 101 0 29 chr15 70358750 70358988 -15336766 - AluSc SINE Alu -3 306 76 1858 163 0 3 chr15 70360417 70360730 -15335024 - AluJb SINE Alu 0 312 1 23 0 0 0 chr15 70361100 70361123 -15334631 + AT_rich Low_complexity Low_complexity 1 23 0 2081 86 4 4 chr15 70362077 70362355 -15333399 + AluSq SINE Alu 3 280 -33 576 99 0 0 chr15 70363126 70363217 -15332537 + L1MB3 LINE L1 6092 6182 -1 2049 140 0 0 chr15 70364210 70364517 -15331237 - AluSx SINE Alu -5 307 1 637 153 110 34 chr15 70364519 70364637 -15331117 - AluJo/FLAM SINE Alu -175 127 1 396 299 116 6 chr15 70364736 70364900 -15330854 - L2 LINE L2 -14 3299 3118 372 229 102 8 chr15 70364975 70365093 -15330661 - L2 LINE L2 -343 2971 2843 2285 101 0 0 chr15 70365463 70365770 -15329984 + AluSx SINE Alu 1 307 -5 304 232 68 116 chr15 70366244 70366434 -15329320 + L2 LINE L2 2302 2482 -832 314 291 105 49 chr15 70366680 70366965 -15328789 + L2 LINE L2 2825 3125 -147 1546 252 97 19 chr15 70367679 70368104 -15327650 + MER115 DNA AcHobo 236 693 0 214 263 50 38 chr15 70368128 70368208 -15327546 + L2 LINE L2 3189 3269 -3 2173 98 0 10 chr15 70369506 70369801 -15325953 - AluSx SINE Alu -12 300 9 290 273 78 23 chr15 70369988 70370116 -15325638 - MARNA DNA Mariner -54 532 398 1837 71 28 8 chr15 70370511 70370766 -15324988 - AluY SINE Alu -7 304 45 523 239 55 37 chr15 70371607 70371770 -15323984 - MLT1J LTR MaLR -60 451 286 633 174 0 0 chr15 70371780 70371878 -15323876 - AluJo SINE Alu -24 288 191 330 284 28 9 chr15 70371885 70371994 -15323760 + HAL1 LINE L1 1532 1642 -865 1207 128 22 0 chr15 70372001 70372181 -15323573 - AluJo SINE Alu -128 184 1 310 246 112 42 chr15 70372254 70372469 -15323285 + HAL1 LINE L1 837 1066 -1441 1108 197 0 5 chr15 70372477 70372690 -15323064 - AluJb SINE Alu -14 298 87 2137 104 0 7 chr15 70372720 70373019 -15322735 + AluSq SINE Alu 1 297 -16 624 205 23 29 chr15 70373020 70373191 -15322563 + HAL1 LINE L1 1080 1249 -1258 2058 120 0 16 chr15 70373192 70373508 -15322246 + AluSx SINE Alu 2 312 0 1977 261 93 26 chr15 70373528 70374146 -15321608 + HAL1 LINE L1 1457 2143 -364 1870 136 0 7 chr15 70374146 70374433 -15321321 + AluJb SINE Alu 2 286 -26 1977 261 93 26 chr15 70374433 70374620 -15321134 + HAL1 LINE L1 2143 2316 -191 1451 143 55 55 chr15 70374650 70374958 -15320796 + AluJo SINE Alu 1 308 -4 710 132 0 0 chr15 70375038 70375144 -15320610 + FLAM_A SINE Alu 28 133 -9 207 0 0 0 chr15 70375305 70375328 -15320426 + (TA)n Simple_repeat Simple_repeat 1 23 0 2167 54 7 17 chr15 70375328 70375622 -15320132 - AluY SINE Alu -20 291 1 2141 96 3 7 chr15 70375829 70376131 -15319623 - AluSx SINE Alu -11 301 1 2308 97 0 0 chr15 70376131 70376439 -15319315 - AluSx SINE Alu -4 308 1 280 286 38 9 chr15 70376623 70376728 -15319026 + LTR67 LTR ERVL 431 538 -19 2172 97 3 3 chr15 70376777 70377076 -15318678 + AluSx SINE Alu 2 300 -12 1146 126 0 11 chr15 70377076 70377252 -15318502 + AluSg/x SINE Alu 134 309 -3 336 248 256 0 chr15 70377399 70377528 -15318226 + L1ME3A LINE L1 5789 5950 -220 1466 147 0 46 chr15 70377908 70378193 -15317561 + AluJb SINE Alu 3 274 -38 35 92 0 0 chr15 70378857 70378955 -15316799 + GC_rich Low_complexity Low_complexity 1 98 0 21 0 0 0 chr15 70378987 70379008 -15316746 + GC_rich Low_complexity Low_complexity 1 21 0 244 229 13 70 chr15 70379212 70379369 -15316385 + G-rich Low_complexity Low_complexity 6 153 0 780 254 28 123 chr15 70380125 70380598 -15315156 + Charlie8 DNA MER1_type 1 428 -1989 250 268 28 0 chr15 70380600 70380671 -15315083 + Charlie8 DNA MER1_type 2341 2413 -4 255 250 0 0 chr15 70380843 70380895 -15314859 - L3 LINE CR1 -50 1527 1476 2416 69 0 3 chr15 70381817 70382122 -15313632 + AluSc SINE Alu 1 304 -5 2235 64 0 55 chr15 70382122 70382448 -15313306 + AluY SINE Alu 1 308 -3 378 318 30 45 chr15 70382603 70382735 -15313019 - L2 LINE L2 -4 3268 3139 582 289 202 42 chr15 70382924 70383485 -15312269 - L2 LINE L2 -445 2869 2399 755 224 68 99 chr15 70383485 70383557 -15312197 + MER102b DNA MER1_type 1 74 -1354 276 30 0 0 chr15 70383557 70383590 -15312164 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 755 224 68 99 chr15 70383590 70383869 -15311885 + MER102b DNA MER1_type 74 341 0 582 289 202 42 chr15 70383869 70383887 -15311867 - L2 LINE L2 -915 2399 2385 2423 69 0 3 chr15 70383887 70384193 -15311561 + AluSp SINE Alu 1 305 -8 582 289 202 42 chr15 70384193 70384571 -15311183 - L2 LINE L2 -929 2385 1757 590 246 106 19 chr15 70384759 70384980 -15310774 - MIR SINE MIR -16 246 6 1318 211 27 27 chr15 70385031 70385263 -15310491 - L1M4 LINE L1 -1227 4919 4685 1477 114 185 8 chr15 70385263 70385517 -15310237 + AluJb SINE Alu 1 299 -3 1318 211 27 27 chr15 70385517 70385620 -15310134 - L1M4 LINE L1 -1460 4686 4584 640 279 113 12 chr15 70385780 70386075 -15309679 - Charlie8 DNA MER1_type -2142 275 3 267 256 100 22 chr15 70386075 70386165 -15309589 + MIR3 SINE MIR 88 184 -24 2146 69 17 7 chr15 70386408 70386699 -15309055 - AluY SINE Alu -17 294 1 1267 141 40 0 chr15 70386699 70386897 -15308857 - AluSg/x SINE Alu -22 290 85 221 317 129 10 chr15 70387076 70387177 -15308577 + L2 LINE L2 3201 3313 0 363 265 100 39 chr15 70387515 70387745 -15308009 + L1MC5 LINE L1 7701 7944 -17 307 275 106 48 chr15 70387901 70388090 -15307664 + MIR SINE MIR 63 262 0 309 320 25 8 chr15 70388434 70388556 -15307198 + L1ME LINE L1 5545 5668 -453 1029 159 58 156 chr15 70389351 70389511 -15306243 - MER33 DNA MER1_type -2261 324 217 2184 104 7 0 chr15 70389511 70389818 -15305936 + AluSx SINE Alu 1 309 -3 1029 159 58 156 chr15 70389818 70390016 -15305738 - MER33 DNA MER1_type -2368 217 1 2214 100 7 0 chr15 70390800 70391099 -15304655 - AluSx SINE Alu -5 307 7 216 0 0 0 chr15 70391127 70391151 -15304603 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2163 111 0 0 chr15 70391203 70391500 -15304254 - AluSx SINE Alu -15 297 1 2060 204 97 68 chr15 70391501 70392038 -15303716 - L1MC4 LINE L1 -135 7907 7193 1603 169 3 23 chr15 70392038 70392345 -15303409 + AluJo SINE Alu 3 303 -9 2060 204 97 68 chr15 70392345 70392546 -15303208 - L1MC4 LINE L1 -849 7193 6999 359 189 14 40 chr15 70392546 70392620 -15303134 - MER51A LTR ERV1 -81 553 482 261 169 17 17 chr15 70392624 70392683 -15303071 - L1MC4 LINE L1 -1027 7015 6957 226 236 155 34 chr15 70392733 70392749 -15303005 - L1MA10 LINE L1 0 6334 6319 2527 194 126 21 chr15 70392749 70393029 -15302725 - L1ME1 LINE L1 -6 6160 5911 1667 189 61 48 chr15 70393029 70393490 -15302264 - MLT1C LTR MaLR 0 467 1 2527 194 126 21 chr15 70393490 70393821 -15301933 - L1ME1 LINE L1 -255 5911 5485 3205 138 22 62 chr15 70393836 70394432 -15301322 - L1MB2 LINE L1 -7 6164 5593 1130 106 0 0 chr15 70394432 70394593 -15301161 - AluSg/x SINE Alu -18 292 132 2387 68 0 3 chr15 70394593 70394903 -15300851 - AluY SINE Alu -2 309 1 2818 179 41 80 chr15 70394903 70395648 -15300106 - L1ME1 LINE L1 -817 5329 4619 2277 77 0 3 chr15 70395648 70395948 -15299806 - AluY SINE Alu -12 299 1 2818 179 41 80 chr15 70395948 70396035 -15299719 - L1ME1 LINE L1 -1527 4619 4530 1152 127 92 4 chr15 70396137 70396365 -15299389 - L1MA8 LINE L1 -5 6286 6039 1711 135 24 10 chr15 70396915 70397211 -15298543 - AluJb SINE Alu -12 300 1 243 286 36 24 chr15 70397461 70397545 -15298209 - MIR SINE MIR -94 114 30 291 271 0 29 chr15 70397691 70397761 -15297993 - MIR SINE MIR -4 258 191 267 31 0 0 chr15 70398308 70398340 -15297414 + (TG)n Simple_repeat Simple_repeat 2 33 0 322 223 182 34 chr15 70398345 70398493 -15297261 + L1M4 LINE L1 2717 2886 -3260 575 133 0 0 chr15 70398515 70398598 -15297156 + AluJ/FLAM SINE Alu 2 84 -228 2135 115 3 3 chr15 70398711 70399023 -15296731 - AluSx SINE Alu 0 312 1 2052 76 69 0 chr15 70399166 70399442 -15296312 + AluSp SINE Alu 1 295 -18 224 279 116 48 chr15 70400132 70400279 -15295475 + MIR SINE MIR 81 237 -25 888 139 0 55 chr15 70400391 70400556 -15295198 - MER3 DNA MER1_type -4 205 50 345 47 0 0 chr15 70401103 70401146 -15294608 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 261 108 27 chr15 70401274 70401385 -15294369 - L2 LINE L2 -4 3268 3149 370 283 51 7 chr15 70401758 70401896 -15293858 + MIR SINE MIR 29 172 -90 874 261 10 0 chr15 70403163 70403366 -15292388 + MIR SINE MIR 36 240 -22 2173 106 3 0 chr15 70403376 70403679 -15292075 - AluSx SINE Alu -8 304 1 418 311 186 0 chr15 70403771 70403938 -15291816 + MIR SINE MIR 23 220 -42 21 0 0 0 chr15 70404064 70404085 -15291669 + AT_rich Low_complexity Low_complexity 1 21 0 2105 125 3 3 chr15 70404682 70404994 -15290760 - AluSx SINE Alu 0 312 1 341 252 41 0 chr15 70405077 70405200 -15290554 - L1ME4a LINE L1 -1 6120 5993 510 289 116 12 chr15 70405213 70405549 -15290205 - L1ME4a LINE L1 -182 5939 5569 1610 227 118 57 chr15 70407231 70407917 -15287837 + L2 LINE L2 2404 3170 -143 2201 92 0 0 chr15 70407917 70408212 -15287542 - AluSx SINE Alu -17 295 1 1610 227 118 57 chr15 70408212 70408366 -15287388 + L2 LINE L2 3170 3313 0 671 208 15 0 chr15 70408383 70408513 -15287241 - MIR SINE MIR -40 222 91 188 293 236 32 chr15 70408564 70408687 -15287067 + MIR SINE MIR 23 170 -92 266 274 109 15 chr15 70408687 70408762 -15286992 - L1P5 LINE L1 -687 5464 5397 1503 169 0 66 chr15 70408762 70409103 -15286651 - AluJb SINE Alu 0 312 1 266 274 109 15 chr15 70409103 70409218 -15286536 - L1P5 LINE L1 -754 5397 5258 766 285 61 0 chr15 70410153 70410381 -15285373 + MIR SINE MIR 12 253 -9 534 228 168 7 chr15 70411458 70411607 -15284147 - MIR SINE MIR -71 191 19 1946 151 0 0 chr15 70412284 70412595 -15283159 + AluSx SINE Alu 1 311 -1 289 353 48 12 chr15 70412777 70412944 -15282810 - MIR3 SINE MIR -7 201 29 197 108 27 0 chr15 70413018 70413055 -15282699 + CT-rich Low_complexity Low_complexity 3 40 0 682 277 64 38 chr15 70413123 70413358 -15282396 - MIR SINE MIR -10 252 12 827 265 28 32 chr15 70413974 70414065 -15281689 + MIR SINE MIR 13 103 -159 252 0 0 0 chr15 70414065 70414093 -15281661 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 2039 77 7 25 chr15 70414095 70414380 -15281374 - AluSp SINE Alu -33 280 1 827 265 28 32 chr15 70414380 70414534 -15281220 + MIR SINE MIR 104 260 -2 13615 111 58 66 chr15 70414629 70415402 -15280352 + Tigger1 DNA MER2_type 1 778 -1640 1994 140 0 7 chr15 70415402 70415710 -15280044 + AluSx SINE Alu 3 308 -4 13615 111 58 66 chr15 70415710 70415833 -15279921 + Tigger1 DNA MER2_type 778 900 -1518 2171 131 0 0 chr15 70415833 70416145 -15279609 - AluSx SINE Alu 0 312 1 13615 111 58 66 chr15 70416145 70416539 -15279215 + Tigger1 DNA MER2_type 900 1295 -1123 2116 101 0 3 chr15 70416539 70416867 -15278887 + AluSq SINE Alu 1 327 0 13615 111 58 66 chr15 70416867 70417510 -15278244 + Tigger1 DNA MER2_type 1295 1941 -477 1867 126 7 0 chr15 70417510 70417779 -15277975 - AluSx SINE Alu -19 293 23 13615 111 58 66 chr15 70417779 70418144 -15277610 + Tigger1 DNA MER2_type 1941 2307 -111 1592 173 0 45 chr15 70418144 70418456 -15277298 - AluJo SINE Alu -14 298 1 13615 111 58 66 chr15 70418456 70418469 -15277285 + Tigger1 DNA MER2_type 2307 2319 -99 2124 117 3 0 chr15 70418469 70418768 -15276986 - AluSq SINE Alu -13 300 1 13615 111 58 66 chr15 70418768 70418886 -15276868 + Tigger1 DNA MER2_type 2319 2418 0 1141 205 5 0 chr15 70418921 70419136 -15276618 - AluJo SINE Alu -11 301 86 404 298 77 24 chr15 70419136 70419304 -15276450 + L1MC4a LINE L1 5556 5732 -389 489 109 0 0 chr15 70419968 70420032 -15275722 + AluS SINE Alu 13 76 -237 22 0 0 0 chr15 70420398 70420420 -15275334 + AT_rich Low_complexity Low_complexity 1 22 0 864 273 107 72 chr15 70420425 70420932 -15274822 - L2 LINE L2 -8 3264 2740 2205 114 0 0 chr15 70421221 70421520 -15274234 + AluSx SINE Alu 1 299 -13 853 306 39 22 chr15 70421531 70421887 -15273867 - L1MC4a LINE L1 -1941 5867 5506 2208 112 0 0 chr15 70421911 70422214 -15273540 - AluSx SINE Alu -9 303 1 1713 122 27 14 chr15 70422235 70422531 -15273223 - L1MB2 LINE L1 -7 6164 5865 589 179 9 9 chr15 70422533 70422639 -15273115 - MLT1E LTR MaLR -484 109 4 1635 276 60 60 chr15 70423182 70423534 -15272220 - L1MC4a LINE L1 -755 5391 5041 2167 79 0 4 chr15 70423534 70423833 -15271921 + AluSc SINE Alu 1 298 0 1635 276 60 60 chr15 70423833 70424405 -15271349 - L1MC4a LINE L1 -1105 5041 5102 2033 121 0 3 chr15 70424405 70424702 -15271052 + AluSq SINE Alu 1 296 -17 1635 276 60 60 chr15 70424702 70425164 -15270590 - L1MC4a LINE L1 -1043 5103 4643 1154 290 166 50 chr15 70425260 70425460 -15270294 - L2 LINE L2 -572 2742 2567 776 192 0 0 chr15 70425460 70425590 -15270164 + FLAM_A SINE Alu 1 130 -3 1154 290 166 50 chr15 70425590 70426197 -15269557 - L2 LINE L2 -747 2567 1841 369 255 11 109 chr15 70426355 70426539 -15269215 - AluJb SINE Alu 0 302 137 273 188 31 0 chr15 70426821 70426885 -15268869 + L1MC4a LINE L1 5870 5935 -1873 * 2002 116 64 9 chr15 70426882 70427211 -15268543 + L1MA4 LINE L1 5676 6022 -278 652 143 0 34 chr15 70427216 70427335 -15268419 - AluSg/x SINE Alu -8 301 187 1209 95 0 0 chr15 70427460 70427648 -15268106 + AluY SINE Alu 130 317 0 316 213 75 53 chr15 70427837 70427931 -15267823 - L2 LINE L2 -19 3253 3158 1810 161 3 3 chr15 70429120 70429419 -15266335 - AluJb SINE Alu -13 299 1 21 36 0 0 chr15 70429419 70429447 -15266307 + AT_rich Low_complexity Low_complexity 1 28 0 1023 152 11 0 chr15 70429844 70430022 -15265732 + AluJb SINE Alu 117 296 -16 1210 146 6 139 chr15 70430326 70430507 -15265247 - AluJo SINE Alu -38 274 151 1799 142 13 28 chr15 70430507 70430824 -15264930 + AluSx SINE Alu 1 312 0 1210 146 6 139 chr15 70430824 70430958 -15264796 - AluJo SINE Alu -161 151 1 1289 147 0 40 chr15 70430962 70431187 -15264567 - AluJb SINE Alu -14 298 83 22 56 0 0 chr15 70431333 70431369 -15264385 + AT_rich Low_complexity Low_complexity 1 36 0 623 204 8 30 chr15 70431376 70431508 -15264246 + FLAM_A SINE Alu 1 129 -4 960 218 67 95 chr15 70431520 70431679 -15264075 - HAL1 LINE L1 -13 2494 2332 1987 123 3 0 chr15 70431679 70431964 -15263790 - AluSx SINE Alu -26 286 1 960 218 67 95 chr15 70431964 70432372 -15263382 - HAL1 LINE L1 -175 2332 1943 2138 211 111 33 chr15 70432377 70433068 -15262686 - HAL1 LINE L1 -802 1705 961 268 263 45 30 chr15 70433072 70433178 -15262576 - L1MC5 LINE L1 -22 7939 7829 2109 96 3 7 chr15 70433178 70433469 -15262285 - AluSx SINE Alu -17 295 6 268 263 45 30 chr15 70433469 70433495 -15262259 - L1MC5 LINE L1 -132 7829 7805 370 290 10 0 chr15 70433633 70433733 -15262021 - HAL1 LINE L1 -1604 903 803 1510 268 74 65 chr15 70434293 70434424 -15261330 - HAL1 LINE L1 -1690 817 689 2258 90 0 0 chr15 70434424 70434714 -15261040 + AluSx SINE Alu 1 290 -22 1510 268 74 65 chr15 70434714 70434867 -15260887 - HAL1 LINE L1 -1818 689 539 8475 27 6 3 chr15 70434867 70436630 -15259124 + L1PA4 LINE L1 4389 6154 -1 1510 268 74 65 chr15 70436630 70437049 -15258705 - HAL1 LINE L1 -1968 539 107 2030 146 0 0 chr15 70438509 70438811 -15256943 - AluSx SINE Alu -10 302 1 204 254 15 46 chr15 70439046 70439176 -15256578 + CT-rich Low_complexity Low_complexity 4 129 0 1264 179 167 0 chr15 70439442 70439694 -15256060 + AluSx SINE Alu 1 294 -8 189 363 66 0 chr15 70439715 70439806 -15255948 - L2 LINE L2 -55 3217 3121 1870 92 20 61 chr15 70439833 70440127 -15255627 + AluY SINE Alu 1 282 -29 26 0 0 0 chr15 70440139 70440165 -15255589 + AT_rich Low_complexity Low_complexity 1 26 0 1633 168 34 7 chr15 70440482 70440779 -15254975 + AluJb SINE Alu 1 305 -7 1942 85 53 11 chr15 70441494 70441777 -15253977 + AluY SINE Alu 1 295 -16 351 222 65 19 chr15 70443153 70443261 -15252493 + L2 LINE L2 3174 3286 -27 285 291 165 0 chr15 70446843 70446946 -15248808 + L2 LINE L2 3134 3253 -19 247 140 0 75 chr15 70447109 70447216 -15248538 + (TCC)n Simple_repeat Simple_repeat 1 99 0 255 123 0 86 chr15 70447273 70447436 -15248318 + (TCC)n Simple_repeat Simple_repeat 2 150 0 397 206 0 72 chr15 70447441 70447635 -15248119 + CT-rich Low_complexity Low_complexity 1 180 0 228 152 57 38 chr15 70447960 70448065 -15247689 + (CTA)n Simple_repeat Simple_repeat 2 108 0 478 170 3 61 chr15 70449089 70449473 -15246281 + CT-rich Low_complexity Low_complexity 1 361 0 372 147 0 58 chr15 70449494 70449650 -15246104 + (TCC)n Simple_repeat Simple_repeat 3 149 0 2195 106 26 0 chr15 70449763 70450066 -15245688 + AluSx SINE Alu 1 311 -1 3004 160 37 9 chr15 70450348 70450923 -15244831 + MER41B LTR ERV1 2 516 -38 2356 110 0 0 chr15 70451006 70451315 -15244439 - AluSx SINE Alu -3 309 1 188 238 90 98 chr15 70451322 70451444 -15244310 - MIR SINE MIR -58 150 30 1555 261 138 14 chr15 70451721 70452381 -15243373 - HAL1b LINE L1 -7 1341 600 1721 165 145 22 chr15 70452717 70453118 -15242636 + LTR47A LTR ERVL 3 452 0 255 297 14 0 chr15 70453123 70453197 -15242557 + L2 LINE L2 2979 3053 -219 2455 77 0 40 chr15 70453847 70454170 -15241584 - AluY SINE Alu -1 310 1 195 363 66 0 chr15 70454197 70454288 -15241466 + L2 LINE L2 3121 3217 -55 1407 171 167 0 chr15 70454309 70454561 -15241193 - AluSx SINE Alu -8 294 1 556 259 48 18 chr15 70455339 70455505 -15240249 - MIR SINE MIR -90 172 2 379 197 0 13 chr15 70455539 70455615 -15240139 - MER94 DNA DNA -34 100 26 650 92 0 99 chr15 70455635 70455766 -15239988 - FRAM SINE Alu -4 172 55 2154 123 7 0 chr15 70457263 70457555 -15238199 + AluSx SINE Alu 1 294 -18 1750 146 19 0 chr15 70458160 70458427 -15237327 + AluJo SINE Alu 26 297 -15 2626 62 0 3 chr15 70458639 70458947 -15236807 + AluSp SINE Alu 1 307 -6 473 245 91 49 chr15 70459213 70459499 -15236255 + L1MC/D LINE L1 5297 5594 -2214 1254 48 0 0 chr15 70459510 70459657 -15236097 - AluY SINE Alu -2 309 163 1939 151 0 0 chr15 70459664 70459956 -15235798 - AluJb SINE Alu -20 292 1 624 325 66 17 chr15 70459962 70460346 -15235408 + L1ME LINE L1 5023 5435 -686 2084 120 21 6 chr15 70460529 70460854 -15234900 - MER44D DNA MER2_type -7 602 3 534 231 110 55 chr15 70461329 70461511 -15234243 - L2 LINE L2 -4 3309 3118 2487 83 0 0 chr15 70461522 70461823 -15233931 - AluSg SINE Alu -9 301 1 447 272 155 17 chr15 70461981 70462220 -15233534 + LTR67 LTR ERVL 17 288 -269 410 269 30 22 chr15 70462243 70462377 -15233377 + LTR67 LTR ERVL 423 557 0 587 304 100 16 chr15 70462378 70462817 -15232937 - L2 LINE L2 -125 3188 2716 2136 171 122 13 chr15 70462825 70463294 -15232460 + MLT1F LTR MaLR 1 520 -22 958 149 53 27 chr15 70464211 70464310 -15231444 + MER44D DNA MER2_type 2 97 -2394 255 31 0 0 chr15 70464310 70464342 -15231412 + (GA)n Simple_repeat Simple_repeat 1 32 0 958 149 53 27 chr15 70464342 70464403 -15231351 + MER44D DNA MER2_type 97 155 -2336 2290 114 3 0 chr15 70464403 70464701 -15231053 - AluSx SINE Alu -13 299 1 958 149 53 27 chr15 70464701 70464727 -15231027 + MER44D DNA MER2_type 155 464 -145 268 231 64 26 chr15 70464818 70464896 -15230858 - MERVL LTR ERVL -2164 3321 3241 518 219 110 61 chr15 70464902 70465066 -15230688 + L2 LINE L2 3142 3313 0 387 221 0 0 chr15 70465073 70465141 -15230613 + MLT1F LTR MaLR 63 130 -412 252 0 0 0 chr15 70465472 70465500 -15230254 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2096 102 34 20 chr15 70465502 70465796 -15229958 - AluSx SINE Alu -14 298 1 359 21 21 0 chr15 70466552 70466600 -15229154 + (CA)n Simple_repeat Simple_repeat 1 49 0 601 207 0 33 chr15 70466605 70466726 -15229028 + L2 LINE L2 3197 3313 0 373 287 37 88 chr15 70466824 70466841 -15228913 + HAL1b LINE L1 338 354 -994 2160 111 24 0 chr15 70466841 70467138 -15228616 + AluSq SINE Alu 1 304 -9 373 287 37 88 chr15 70467138 70467392 -15228362 + HAL1b LINE L1 354 595 -753 1863 147 34 0 chr15 70467430 70467547 -15228207 + AluJb SINE Alu 1 113 -199 282 29 0 0 chr15 70467547 70467582 -15228172 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1863 147 34 0 chr15 70467582 70467757 -15227997 + AluJb SINE Alu 113 303 -9 1979 128 45 0 chr15 70468621 70468911 -15226843 - AluJo SINE Alu -9 303 1 27 0 0 0 chr15 70469003 70469030 -15226724 + AT_rich Low_complexity Low_complexity 1 27 0 1729 128 105 8 chr15 70469295 70469561 -15226193 + AluSx SINE Alu 3 294 -18 1348 126 105 28 chr15 70470190 70470475 -15225279 + L1MC1 LINE L1 6027 6333 0 1691 139 96 7 chr15 70470483 70470764 -15224990 + AluJo SINE Alu 1 306 -6 2033 138 0 3 chr15 70470769 70471082 -15224672 + AluSq SINE Alu 1 312 0 196 229 42 0 chr15 70471552 70471600 -15224154 + L2 LINE L2 492 541 -2773 1458 123 0 23 chr15 70471705 70471925 -15223829 - AluJb SINE Alu -11 301 87 180 0 0 0 chr15 70472117 70472137 -15223617 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1842 142 7 7 chr15 70472155 70472437 -15223317 - AluJo SINE Alu -30 282 1 407 219 33 112 chr15 70472644 70472856 -15222898 - HAL1 LINE L1 -155 2352 2160 2259 100 0 3 chr15 70472856 70473155 -15222599 - AluSg SINE Alu -12 298 1 407 219 33 112 chr15 70473155 70473184 -15222570 - HAL1 LINE L1 -347 2160 2130 2215 104 3 3 chr15 70473663 70473960 -15221794 + AluSp SINE Alu 1 297 -16 191 237 51 34 chr15 70473965 70474024 -15221730 - L2 LINE L2 -932 2382 2323 38 22 0 0 chr15 70474075 70474120 -15221634 + AT_rich Low_complexity Low_complexity 1 45 0 181 347 116 0 chr15 70474739 70474860 -15220894 - L2 LINE L2 -1276 2038 1904 1248 219 59 34 chr15 70474901 70475257 -15220497 + MLT1A1 LTR MaLR 1 365 0 1835 141 27 20 chr15 70475688 70475986 -15219768 - AluJb SINE Alu -2 310 11 783 59 0 0 chr15 70476347 70476448 -15219306 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 2048 109 15 0 chr15 70476450 70476724 -15219030 - AluSx SINE Alu -34 278 1 855 199 25 0 chr15 70477306 70477467 -15218287 - AluJb SINE Alu -11 301 137 2525 54 3 3 chr15 70477751 70478045 -15217709 + AluSp SINE Alu 1 294 -19 2480 73 0 25 chr15 70478703 70479020 -15216734 - AluY SINE Alu -2 309 1 1702 194 21 41 chr15 70479335 70479363 -15216391 - L1M4 LINE L1 -2618 3528 3501 2097 139 13 13 chr15 70479363 70479665 -15216089 - AluSx SINE Alu -10 302 1 1702 194 21 41 chr15 70479665 70480101 -15215653 - L1M4 LINE L1 -2645 3501 3073 2461 75 3 3 chr15 70480106 70480411 -15215343 - AluSp SINE Alu -8 305 1 355 232 0 0 chr15 70480462 70480544 -15215210 - L1M4 LINE L1 -3060 3086 3005 651 263 23 17 chr15 70480614 70480789 -15214965 + MER5B DNA MER1_type 1 176 -2 305 271 19 37 chr15 70480799 70480906 -15214848 - MER5C DNA MER1_type 0 324 220 271 154 169 31 chr15 70481047 70481112 -15214642 - MER5C DNA MER1_type -250 74 1 2548 74 0 6 chr15 70481525 70481836 -15213918 - AluSq SINE Alu -4 309 1 480 256 217 0 chr15 70481899 70482102 -15213652 - L1MC4 LINE L1 -1025 7017 6771 887 195 30 0 chr15 70482113 70482277 -15213477 - FRAM SINE Alu -7 169 1 2358 87 3 0 chr15 70482346 70482634 -15213120 - AluSg SINE Alu -21 289 1 823 122 233 17 chr15 70482850 70483030 -15212724 - MER20 DNA MER1_type 0 219 1 2303 121 0 0 chr15 70484620 70484918 -15210836 + AluSx SINE Alu 1 298 -14 187 242 189 11 chr15 70485121 70485216 -15210538 + L2 LINE L2 1258 1369 -1945 588 173 31 31 chr15 70485220 70485347 -15210407 - MER20 DNA MER1_type -92 127 1 1543 147 0 0 chr15 70485461 70485679 -15210075 + AluJb SINE Alu 1 218 -94 283 151 0 0 chr15 70485681 70485734 -15210020 + FAM SINE Alu 127 179 0 1226 139 0 0 chr15 70485813 70485986 -15209768 + AluSg/x SINE Alu 130 302 -10 288 143 54 0 chr15 70486003 70486059 -15209695 + L1ME2 LINE L1 5822 5880 -284 792 96 9 17 chr15 70486070 70486185 -15209569 + FLAM_C SINE Alu 3 116 -17 30 27 0 0 chr15 70486185 70486222 -15209532 + AT_rich Low_complexity Low_complexity 1 37 0 2240 120 7 0 chr15 70486432 70486741 -15209013 + AluSq SINE Alu 3 313 0 22 0 0 0 chr15 70486741 70486763 -15208991 + AT_rich Low_complexity Low_complexity 1 22 0 534 302 60 33 chr15 70487014 70487315 -15208439 + L2 LINE L2 1594 1902 -1412 379 353 153 29 chr15 70487532 70487807 -15207947 - L2 LINE L2 0 3272 2964 2109 139 0 7 chr15 70487918 70488221 -15207533 - AluSx SINE Alu -11 301 1 183 310 187 26 chr15 70488321 70488589 -15207165 + L2 LINE L2 2033 2343 -971 924 204 6 6 chr15 70488645 70488826 -15206928 + AluJo SINE Alu 127 307 -5 286 148 125 23 chr15 70489109 70489197 -15206557 + L1MC5 LINE L1 7830 7926 -35 1996 133 42 21 chr15 70490069 70490406 -15205348 + MER2 DNA MER2_type 1 344 0 350 189 54 0 chr15 70490474 70490548 -15205206 - L1MEc LINE L1 -2874 3341 3264 1824 142 29 7 chr15 70490553 70490834 -15204920 - AluJb SINE Alu -25 287 1 2164 231 25 55 chr15 70490835 70491302 -15204452 - L1MEc LINE L1 -3215 3000 2561 2159 148 66 6 chr15 70491302 70491668 -15204086 + MLT1B LTR MaLR 1 388 -2 2164 231 25 55 chr15 70491668 70491931 -15203823 - L1MEc LINE L1 -3654 2561 2292 2116 153 0 3 chr15 70491931 70492239 -15203515 + AluJb SINE Alu 1 307 -5 1209 228 77 43 chr15 70492271 70492556 -15203198 - L1MEc LINE L1 -4059 2337 2063 2285 89 0 4 chr15 70492556 70492879 -15202875 - AluSc SINE Alu 0 322 1 1209 228 77 43 chr15 70492879 70493008 -15202746 - L1MEc LINE L1 -4333 2063 1940 1945 181 0 7 chr15 70493008 70493312 -15202442 - AluJb SINE Alu -10 302 1 1209 228 77 43 chr15 70493312 70493451 -15202303 - L1MEc LINE L1 -4456 1940 1763 1192 101 11 6 chr15 70493436 70493615 -15202139 - L1MC/D LINE L1 -533 5800 5621 * 369 270 0 9 chr15 70493609 70493720 -15202034 - L1MEc LINE L1 -4647 1749 1640 * 2095 86 26 0 chr15 70493992 70494261 -15201493 + AluSx SINE Alu 1 276 -36 248 0 31 0 chr15 70494265 70494297 -15201457 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 714 236 46 21 chr15 70494652 70494893 -15200861 - LTR16A1 LTR ERVL -2 455 209 2342 96 23 0 chr15 70495560 70495861 -15199893 - AluSq SINE Alu -5 308 1 1932 159 3 3 chr15 70495863 70496165 -15199589 - AluJb SINE Alu -9 303 2 896 132 0 22 chr15 70496371 70496507 -15199247 + FLAM_C SINE Alu 1 133 0 6319 129 38 19 chr15 70496881 70496892 -15198862 - L1MC1 LINE L1 0 6333 6324 2418 104 0 0 chr15 70496892 70497199 -15198555 - AluSx SINE Alu -5 307 1 6319 129 38 19 chr15 70497199 70498163 -15197591 - L1MC1 LINE L1 -9 6324 5320 1892 180 0 10 chr15 70498163 70498469 -15197285 - AluJo SINE Alu -9 303 1 6319 129 38 19 chr15 70498469 70498711 -15197043 - L1MC1 LINE L1 -1013 5320 5084 1666 119 26 0 chr15 70498714 70498940 -15196814 - AluSx SINE Alu -80 232 1 2344 108 0 0 chr15 70499070 70499377 -15196377 + AluSx SINE Alu 1 307 -5 549 269 107 48 chr15 70499614 70499663 -15196091 - LTR33 LTR ERVL -1 520 475 2317 53 74 3 chr15 70499663 70499946 -15195808 - AluY SINE Alu -8 303 1 549 269 107 48 chr15 70499946 70500167 -15195587 - LTR33 LTR ERVL -46 475 234 976 181 0 0 chr15 70500335 70500501 -15195253 + FRAM SINE Alu 1 166 0 1233 139 83 111 chr15 70500507 70500821 -15194933 + AluJb SINE Alu 7 312 0 595 130 20 10 chr15 70500836 70500936 -15194818 + FRAM SINE Alu 63 163 -13 2517 74 0 0 chr15 70500942 70501240 -15194514 + AluY SINE Alu 3 300 -11 483 303 157 14 chr15 70501332 70501689 -15194065 - MLT1L LTR MaLR -189 426 19 1797 151 19 41 chr15 70501760 70501894 -15193860 + AluJb SINE Alu 1 136 -176 2623 50 0 0 chr15 70501894 70502194 -15193560 + AluY SINE Alu 1 300 -11 2097 116 25 0 chr15 70502200 70502485 -15193269 + AluSx SINE Alu 4 295 -17 1797 151 19 41 chr15 70502485 70502662 -15193092 + AluJb SINE Alu 141 312 0 2098 125 7 0 chr15 70503363 70503652 -15192102 + AluSx SINE Alu 1 291 -21 1657 179 27 10 chr15 70503683 70503979 -15191775 + AluJo SINE Alu 1 301 -11 1993 147 10 16 chr15 70504238 70504552 -15191202 + AluSx SINE Alu 1 312 0 983 179 0 17 chr15 70504553 70504749 -15191005 + AluSc SINE Alu 119 311 0 395 170 94 19 chr15 70504749 70504855 -15190899 + HAL1 LINE L1 117 230 -2277 270 81 0 0 chr15 70504892 70504929 -15190825 + (TG)n Simple_repeat Simple_repeat 1 37 0 540 190 162 42 chr15 70504983 70505159 -15190595 - MLT2D LTR ERVL -65 349 141 1542 193 80 17 chr15 70505159 70505511 -15190243 + MLT1A2 LTR MaLR 1 374 0 540 190 162 42 chr15 70505511 70505550 -15190204 - MLT2D LTR ERVL -273 141 108 829 169 0 0 chr15 70505554 70505684 -15190070 - FLAM_C SINE Alu -3 140 11 588 103 65 0 chr15 70505695 70505802 -15189952 - MLT2B2 LTR ERVL -401 114 1 1236 272 103 16 chr15 70505804 70506355 -15189399 + HAL1 LINE L1 265 863 -1644 307 261 0 23 chr15 70506337 70506425 -15189329 - L1M4 LINE L1 -5020 1522 1437 * 756 157 0 25 chr15 70556425 70556546 -15139208 + FAM SINE Alu 1 44 -5 301 250 98 18 chr15 70556627 70556739 -15139015 - L1ME4a LINE L1 -200 5921 5801 366 213 133 53 chr15 70556833 70556983 -15138771 + MER112 DNA MER1_type 44 205 -55 26 50 0 0 chr15 70557192 70557232 -15138522 + AT_rich Low_complexity Low_complexity 1 40 0 223 361 52 33 chr15 70557686 70557899 -15137855 - L2 LINE L2 -229 3043 2827 318 297 85 8 chr15 70558363 70558481 -15137273 - L3 LINE CR1 -100 1477 1351 23 0 0 0 chr15 70558762 70558785 -15136969 + AT_rich Low_complexity Low_complexity 1 23 0 648 227 188 11 chr15 70558855 70559132 -15136622 - HAL1 LINE L1 -1146 1361 1036 591 230 32 101 chr15 70559295 70559377 -15136377 - MIR SINE MIR -31 231 145 2223 113 0 3 chr15 70559377 70559677 -15136077 - AluSg SINE Alu -11 299 1 591 230 32 101 chr15 70559677 70559842 -15135912 - MIR SINE MIR -117 145 1 493 282 134 46 chr15 70559842 70560034 -15135720 - L3 LINE CR1 -910 667 457 516 293 135 9 chr15 70560079 70560301 -15135453 + MIR SINE MIR 13 262 0 532 351 58 26 chr15 70560301 70560646 -15135108 - L3 LINE CR1 -1173 404 49 558 270 165 52 chr15 70560803 70561148 -15134606 + L2 LINE L2 102 485 -2829 2046 120 36 7 chr15 70561151 70561452 -15134302 - AluSx SINE Alu 0 312 3 1960 141 7 3 chr15 70561485 70561782 -15133972 + AluSx SINE Alu 6 303 -9 26 30 0 0 chr15 70562368 70562401 -15133353 + AT_rich Low_complexity Low_complexity 1 33 0 1304 184 3 109 chr15 70562554 70562863 -15132891 + AluSp SINE Alu 1 341 28 267 31 0 0 chr15 70562863 70562895 -15132859 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2241 95 0 3 chr15 70562897 70563181 -15132573 - AluSx SINE Alu -29 283 1 1304 184 3 109 chr15 70563181 70563216 -15132538 + AluSp SINE Alu 274 311 -2 972 127 0 8 chr15 70563231 70563365 -15132389 - FLAM_C SINE Alu 0 133 1 389 306 18 45 chr15 70565033 70565144 -15130610 - L2 LINE L2 -24 3248 3141 266 360 98 42 chr15 70565529 70566049 -15129705 - L2 LINE L2 -819 2495 1947 490 258 67 17 chr15 70566814 70566992 -15128762 + MIR SINE MIR 5 191 -71 21 0 0 0 chr15 70567304 70567325 -15128429 + AT_rich Low_complexity Low_complexity 1 21 0 191 113 88 0 chr15 70567505 70567585 -15128169 + (TA)n Simple_repeat Simple_repeat 1 87 0 1579 175 14 14 chr15 70567612 70567898 -15127856 - AluJo SINE Alu 0 312 27 22 80 0 0 chr15 70567898 70567948 -15127806 + AT_rich Low_complexity Low_complexity 1 50 0 1971 142 44 0 chr15 70568074 70568369 -15127385 + AluSx SINE Alu 1 308 -4 1463 190 25 4 chr15 70569109 70569383 -15126371 + AluJo SINE Alu 5 284 -28 237 83 0 0 chr15 70569686 70569722 -15126032 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1946 136 7 7 chr15 70569722 70570002 -15125752 - AluSx SINE Alu -32 280 1 24 32 0 0 chr15 70570303 70570334 -15125420 + AT_rich Low_complexity Low_complexity 1 31 0 3924 206 99 16 chr15 70570350 70571217 -15124537 - L1MD3 LINE L1 -26 7997 7061 2086 110 33 17 chr15 70571217 70571517 -15124237 - AluSx SINE Alu -7 305 1 3924 206 99 16 chr15 70571517 70571687 -15124067 - L1MD3 LINE L1 -962 7061 6907 514 157 12 0 chr15 70571674 70571757 -15123997 - L1MC4a LINE L1 -1113 6695 6612 * 191 191 48 0 chr15 70571829 70571871 -15123883 + MER5A DNA MER1_type 145 188 -1 2251 101 7 3 chr15 70571993 70572300 -15123454 - AluSq SINE Alu -5 308 1 492 198 41 128 chr15 70572916 70573088 -15122666 + MER5B DNA MER1_type 19 175 -3 2332 64 0 10 chr15 70573452 70573750 -15122004 - AluY SINE Alu -16 295 1 217 261 0 0 chr15 70573832 70573878 -15121876 - L2 LINE L2 -1 3312 3267 2334 109 0 0 chr15 70574478 70574789 -15120965 + AluSx SINE Alu 1 311 -1 698 151 0 59 chr15 70574869 70574988 -15120766 - FLAM_C SINE Alu -5 138 27 193 279 164 0 chr15 70575233 70575294 -15120460 + L2 LINE L2 3201 3271 -1 714 251 103 29 chr15 70575683 70575926 -15119828 - MIR SINE MIR 0 262 2 2294 97 10 0 chr15 70576089 70576399 -15119355 + AluSp SINE Alu 1 313 0 2110 135 0 0 chr15 70576411 70576714 -15119040 + AluSx SINE Alu 1 303 -9 2929 187 56 51 chr15 70576720 70577338 -15118416 - L1MB7 LINE L1 -10 6174 5550 2066 141 10 0 chr15 70577338 70577643 -15118111 - AluSx SINE Alu -4 308 1 2929 187 56 51 chr15 70577643 70577752 -15118002 - L1MB7 LINE L1 -634 5550 5443 2424 75 0 25 chr15 70578497 70578815 -15116939 - AluY SINE Alu -1 310 1 1793 188 21 59 chr15 70579130 70579167 -15116587 - L1MB7 LINE L1 -2618 3528 3491 2052 133 14 14 chr15 70579167 70579460 -15116294 - AluSx SINE Alu -19 293 1 1793 188 21 59 chr15 70579460 70579896 -15115858 - L1MB7 LINE L1 -2655 3491 3073 2419 69 3 10 chr15 70579901 70580206 -15115548 - AluSp SINE Alu -10 303 1 370 232 0 0 chr15 70580257 70580339 -15115415 - L1MB7 LINE L1 -3060 3086 3005 670 263 23 17 chr15 70580409 70580584 -15115170 + MER5B DNA MER1_type 1 176 -2 287 271 19 37 chr15 70580594 70580701 -15115053 - MER5C DNA MER1_type 0 324 220 262 154 169 31 chr15 70580842 70580907 -15114847 - MER5C DNA MER1_type -250 74 1 2507 74 0 6 chr15 70581320 70581631 -15114123 - AluSq SINE Alu -4 309 1 522 256 217 0 chr15 70581694 70581897 -15113857 - L1MC4 LINE L1 -1025 7017 6771 855 195 30 0 chr15 70581908 70582072 -15113682 - AluJb SINE Alu -7 305 137 2321 87 3 0 chr15 70582141 70582429 -15113325 - AluSg SINE Alu -21 289 1 865 122 233 17 chr15 70582645 70582825 -15112929 - MER20 DNA MER1_type 0 219 1 2265 121 0 0 chr15 70584415 70584713 -15111041 + AluSx SINE Alu 1 298 -14 622 173 31 31 chr15 70585015 70585142 -15110612 - MER20 DNA MER1_type -92 127 1 1510 147 0 0 chr15 70585256 70585474 -15110280 + AluJb SINE Alu 1 218 -94 304 151 0 0 chr15 70585476 70585529 -15110225 + FAM SINE Alu 127 179 0 240 204 0 0 chr15 70585548 70585592 -15110162 + L1ME2 LINE L1 5559 5602 -519 1196 139 0 0 chr15 70585608 70585781 -15109973 + AluSg/x SINE Alu 130 302 -10 308 143 54 0 chr15 70585798 70585854 -15109900 + L1ME2 LINE L1 5822 5880 -284 806 96 9 17 chr15 70585865 70585980 -15109774 + FLAM_C SINE Alu 3 116 -17 30 27 0 0 chr15 70585980 70586017 -15109737 + AT_rich Low_complexity Low_complexity 1 37 0 2192 120 7 0 chr15 70586227 70586536 -15109218 + AluSq SINE Alu 3 313 0 499 296 57 47 chr15 70586809 70587127 -15108627 + L2 LINE L2 1594 1914 -1400 273 358 176 26 chr15 70587327 70587713 -15108041 - L2 LINE L2 0 3272 2829 2057 137 0 7 chr15 70587716 70588016 -15107738 - AluSx SINE Alu -14 298 1 873 181 6 18 chr15 70588440 70588606 -15107148 + AluJo SINE Alu 127 290 -22 319 148 125 23 chr15 70588904 70588992 -15106762 + L1MC5 LINE L1 7830 7926 -35 2130 133 42 21 chr15 70589864 70590201 -15105553 + MER2 DNA MER2_type 1 344 0 246 189 54 0 chr15 70590269 70590343 -15105411 - L1MEc LINE L1 -2874 3341 3264 1785 142 29 7 chr15 70590348 70590629 -15105125 - AluJb SINE Alu -25 287 1 2377 226 25 55 chr15 70590630 70591097 -15104657 - L1MEc LINE L1 -3215 3000 2561 2260 142 68 8 chr15 70591097 70591463 -15104291 + MLT1B LTR MaLR 1 388 -2 2377 226 25 55 chr15 70591463 70591726 -15104028 - L1MEc LINE L1 -3654 2561 2292 2085 150 0 3 chr15 70591726 70592032 -15103722 + AluJb SINE Alu 1 305 -7 1410 219 79 45 chr15 70592066 70592351 -15103403 - L1MEc LINE L1 -4059 2337 2063 2253 89 0 4 chr15 70592351 70592674 -15103080 - AluSc SINE Alu 0 322 1 1410 219 79 45 chr15 70592674 70592803 -15102951 - L1MEc LINE L1 -4333 2063 1940 1900 181 0 7 chr15 70592803 70593107 -15102647 - AluJb SINE Alu -10 302 1 1410 219 79 45 chr15 70593107 70593246 -15102508 - L1MEc LINE L1 -4456 1940 1763 1266 164 13 8 chr15 70593231 70593515 -15102239 - L1P4 LINE L1 -363 5869 1640 * 2061 86 26 0 chr15 70593787 70594056 -15101698 + AluSx SINE Alu 1 276 -36 248 0 31 0 chr15 70594060 70594092 -15101662 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 784 236 46 21 chr15 70594447 70594688 -15101066 - LTR16A1 LTR ERVL -2 455 209 2276 100 23 0 chr15 70595355 70595656 -15100098 - AluSq SINE Alu -5 308 1 1888 159 3 3 chr15 70595658 70595960 -15099794 - AluJb SINE Alu -9 303 2 929 132 0 22 chr15 70596166 70596302 -15099452 + FLAM_C SINE Alu 1 133 0 6661 124 38 34 chr15 70596677 70596688 -15099066 - L1MC1 LINE L1 0 6333 6324 2361 108 0 0 chr15 70596688 70596995 -15098759 - AluSx SINE Alu -5 307 1 6661 124 38 34 chr15 70596995 70597972 -15097782 - L1MC1 LINE L1 -9 6324 5324 1847 181 0 0 chr15 70597972 70598265 -15097489 - AluJo SINE Alu -19 293 1 6661 124 38 34 chr15 70598265 70598497 -15097257 - L1MC1 LINE L1 -1009 5324 5094 1654 119 26 0 chr15 70598510 70598736 -15097018 - AluSx SINE Alu -80 232 1 2323 108 0 0 chr15 70598866 70599173 -15096581 + AluSx SINE Alu 1 307 -5 617 266 107 48 chr15 70599410 70599459 -15096295 - LTR33 LTR ERVL -1 520 475 2302 53 74 3 chr15 70599459 70599742 -15096012 - AluY SINE Alu -8 303 1 617 266 107 48 chr15 70599742 70599963 -15095791 - LTR33 LTR ERVL -46 475 234 946 181 0 0 chr15 70600131 70600297 -15095457 + FRAM SINE Alu 1 166 0 1214 143 86 104 chr15 70600303 70600610 -15095144 + AluJb SINE Alu 7 308 0 593 129 20 10 chr15 70600632 70600733 -15095021 + FRAM SINE Alu 63 164 -12 2504 74 0 0 chr15 70600739 70601037 -15094717 + AluY SINE Alu 3 300 -11 532 293 133 24 chr15 70601047 70601486 -15094268 - MLT1L LTR MaLR -73 542 19 1760 151 19 41 chr15 70601557 70601691 -15094063 + AluJb SINE Alu 1 136 -176 2615 50 0 0 chr15 70601691 70601991 -15093763 + AluY SINE Alu 1 300 -11 2077 116 25 0 chr15 70601997 70602282 -15093472 + AluSx SINE Alu 4 295 -17 1760 151 19 41 chr15 70602282 70602459 -15093295 + AluJb SINE Alu 141 312 0 2077 125 7 0 chr15 70603166 70603455 -15092299 + AluSx SINE Alu 1 291 -21 1620 179 27 10 chr15 70603486 70603782 -15091972 + AluJo SINE Alu 1 301 -11 1953 147 10 16 chr15 70604041 70604355 -15091399 + AluSx SINE Alu 1 312 0 964 184 0 6 chr15 70604366 70604552 -15091202 + AluSc SINE Alu 127 311 0 405 173 79 55 chr15 70604552 70604679 -15091075 + HAL1 LINE L1 117 246 -2261 270 81 0 0 chr15 70604695 70604732 -15091022 + (TG)n Simple_repeat Simple_repeat 1 37 0 612 190 162 42 chr15 70604786 70604962 -15090792 - MLT2D LTR ERVL -65 349 141 1495 193 80 17 chr15 70604962 70605314 -15090440 + MLT1A2 LTR MaLR 1 374 0 612 190 162 42 chr15 70605314 70605353 -15090401 - MLT2D LTR ERVL -273 141 108 805 169 0 0 chr15 70605357 70605487 -15090267 - FLAM_C SINE Alu -3 140 11 630 103 65 0 chr15 70605498 70605605 -15090149 - MLT2B1 LTR ERVL -406 114 1 1376 272 103 16 chr15 70605607 70606158 -15089596 + HAL1 LINE L1 265 863 -1644 819 212 35 151 chr15 70606140 70606392 -15089362 - L1MCc LINE L1 -5020 1819 1539 * 2142 115 14 0 chr15 70606392 70606687 -15089067 - AluSx SINE Alu -3 309 11 819 212 35 151 chr15 70606687 70606735 -15089019 - L1MCc LINE L1 -5300 1539 1487 1788 140 3 58 chr15 70606735 70607043 -15088711 + AluJb SINE Alu 1 291 -21 768 197 0 0 chr15 70607053 70607185 -15088569 + FLAM_A SINE Alu 1 132 -1 819 212 35 151 chr15 70607185 70607216 -15088538 - L1MCc LINE L1 -5362 1477 1444 2363 90 0 3 chr15 70607216 70607517 -15088237 - AluSq SINE Alu -13 300 1 819 212 35 151 chr15 70607517 70607748 -15088006 - L1MCc LINE L1 -5395 1444 1311 2121 143 0 0 chr15 70608217 70608524 -15087230 + AluJb SINE Alu 1 307 -5 1936 143 6 13 chr15 70608558 70608872 -15086882 - AluJo SINE Alu 0 312 1 718 145 48 0 chr15 70609503 70609627 -15086127 + FLAM_C SINE Alu 2 131 -12 1806 151 10 24 chr15 70609908 70610199 -15085555 + AluJo SINE Alu 1 287 -25 316 313 87 13 chr15 70610200 70610350 -15085404 - MIR SINE MIR -2 260 100 21 0 0 0 chr15 70610468 70610489 -15085265 + AT_rich Low_complexity Low_complexity 1 21 0 2206 120 0 3 chr15 70610636 70610936 -15084818 - AluSx SINE Alu -13 299 1 275 271 52 65 chr15 70610942 70611097 -15084657 - L1MCc LINE L1 -5095 1328 1176 1719 115 83 4 chr15 70611533 70611786 -15083968 + AluSg SINE Alu 1 273 -37 812 142 31 0 chr15 70612224 70612351 -15083403 + FLAM_C SINE Alu 1 131 -12 1886 142 46 0 chr15 70612437 70612719 -15083035 - AluSx SINE Alu -17 295 1 946 256 113 41 chr15 70612917 70613307 -15082447 - MLT1K LTR MaLR -55 533 116 1363 220 68 33 chr15 70613590 70613985 -15081769 + MER74B LTR ERVL 204 612 -10 339 213 0 0 chr15 70614277 70614357 -15081397 + CT-rich Low_complexity Low_complexity 3 82 0 1698 181 73 66 chr15 70614457 70614838 -15080916 - L1MB4 LINE L1 -1 6179 5781 2373 96 0 7 chr15 70614838 70615141 -15080613 - AluSx SINE Alu -11 301 1 1698 181 73 66 chr15 70615141 70615228 -15080526 - L1MB4 LINE L1 -399 5781 5696 2450 73 3 0 chr15 70615237 70615539 -15080215 - AluY SINE Alu -8 303 1 562 138 23 0 chr15 70616257 70616344 -15079410 - AluSg/x SINE Alu -16 296 208 1939 151 0 22 chr15 70616416 70616733 -15079021 + AluSx SINE Alu 1 310 -2 26 74 0 0 chr15 70616755 70616809 -15078945 + AT_rich Low_complexity Low_complexity 1 54 0 2489 60 0 10 chr15 70616915 70617217 -15078537 - AluY SINE Alu -12 299 1 319 220 90 20 chr15 70617218 70617318 -15078436 - L1ME3 LINE L1 -256 5906 5800 2153 130 0 3 chr15 70617367 70617668 -15078086 + AluSx SINE Alu 1 300 -12 802 177 138 83 chr15 70617710 70617826 -15077928 + LTR37A LTR ERV1 46 154 -272 2281 102 3 3 chr15 70617826 70618131 -15077623 + AluSx SINE Alu 1 305 -7 802 177 138 83 chr15 70618131 70618375 -15077379 + LTR37A LTR ERV1 154 426 0 1443 215 98 6 chr15 70618375 70618777 -15076977 - L1ME3 LINE L1 -357 5805 5373 2719 138 49 6 chr15 70618811 70619282 -15076472 + L1MB4 LINE L1 5682 6172 -8 267 215 0 0 chr15 70619292 70619357 -15076397 + GA-rich Low_complexity Low_complexity 2 66 0 291 183 33 0 chr15 70619366 70619426 -15076328 + Charlie8 DNA MER1_type 152 213 -2204 558 262 68 32 chr15 70620544 70620796 -15074958 + MIR SINE MIR 2 262 0 251 288 48 48 chr15 70620815 70620940 -15074814 - MIR SINE MIR -112 150 26 2497 60 7 0 chr15 70621591 70621893 -15073861 - AluY SINE Alu -7 304 1 1774 147 26 0 chr15 70621924 70622197 -15073557 + AluSx SINE Alu 1 280 -32 30 59 0 0 chr15 70622317 70622368 -15073386 + AT_rich Low_complexity Low_complexity 1 51 0 225 280 43 11 chr15 70622720 70622813 -15072941 - LTR11 LTR ERV -171 513 418 286 243 43 0 chr15 70622818 70622888 -15072866 + L2 LINE L2 3195 3267 -5 183 80 0 0 chr15 70623223 70623248 -15072506 + (T)n Simple_repeat Simple_repeat 1 25 0 909 159 99 107 chr15 70623255 70623488 -15072266 - AluJb SINE Alu -81 231 1 864 154 7 0 chr15 70623516 70623652 -15072102 + FLAM_C SINE Alu 1 137 -6 2192 119 16 0 chr15 70623924 70624227 -15071527 - AluSq SINE Alu -5 308 1 21 36 0 0 chr15 70624227 70624255 -15071499 + AT_rich Low_complexity Low_complexity 1 28 0 2275 99 3 0 chr15 70624255 70624547 -15071207 + AluSg SINE Alu 1 293 -17 1943 102 3 77 chr15 70624620 70624722 -15071032 + AluSx SINE Alu 15 123 -189 2342 83 0 0 chr15 70624722 70625011 -15070743 - AluY SINE Alu -21 290 2 1943 102 3 77 chr15 70625011 70625221 -15070533 + AluSx SINE Alu 123 304 -8 288 250 54 89 chr15 70625332 70625444 -15070310 - L1ME3A LINE L1 -97 6073 5966 2319 88 0 3 chr15 70625449 70625745 -15070009 - AluSq SINE Alu -18 295 1 411 218 64 16 chr15 70625813 70625967 -15069787 - L1ME3A LINE L1 -206 5956 5800 1737 179 7 3 chr15 70625975 70626266 -15069488 + AluJo SINE Alu 1 292 -20 1461 184 60 16 chr15 70626286 70626621 -15069133 - L1MB1 LINE L1 -34 6134 5790 1895 151 0 0 chr15 70626621 70626905 -15068849 - AluJo SINE Alu -17 295 12 241 146 62 0 chr15 70626917 70626965 -15068789 - L1M3 LINE L1 -340 5828 5778 1186 226 188 55 chr15 70627017 70627511 -15068243 - MER21B LTR ERV1 -74 857 214 2134 134 0 0 chr15 70627514 70627812 -15067942 - AluSx SINE Alu -14 298 1 515 250 125 21 chr15 70627843 70628083 -15067671 - L1M3 LINE L1 -533 5631 5367 2373 45 0 58 chr15 70628102 70628414 -15067340 - AluY SINE Alu -17 294 1 271 261 0 0 chr15 70628460 70628529 -15067225 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 5552 104 35 15 chr15 70628608 70628862 -15066892 - L1MA5A LINE L1 -2 6295 6048 2421 104 3 0 chr15 70628862 70629171 -15066583 - AluSp SINE Alu -3 310 1 5552 104 35 15 chr15 70629171 70629772 -15065982 - L1MA5A LINE L1 -249 6048 5423 923 146 0 7 chr15 70629780 70629917 -15065837 - AluJo SINE Alu -176 136 1 1508 246 146 29 chr15 70629999 70630479 -15065275 + MER68 LTR ERV1 1 536 -26 631 232 86 49 chr15 70630499 70630642 -15065112 - L1M3 LINE L1 -1526 4620 4484 1976 158 7 0 chr15 70630642 70630939 -15064815 - AluJb SINE Alu -13 299 1 631 232 86 49 chr15 70630939 70630999 -15064755 - L1M3 LINE L1 -1662 4484 4428 2171 113 0 39 chr15 70630999 70631309 -15064445 - AluSx SINE Alu -14 298 1 631 232 86 49 chr15 70631309 70631431 -15064323 - L1M3 LINE L1 -1718 4428 4282 469 108 0 0 chr15 70631436 70631501 -15064253 - MLT1D LTR MaLR 0 626 562 714 181 0 8 chr15 70631502 70631629 -15064125 + FLAM_C SINE Alu 2 127 -16 2220 122 0 0 chr15 70631638 70631941 -15063813 + AluSq SINE Alu 8 310 -3 1762 199 39 42 chr15 70631945 70632377 -15063377 - MLT1D LTR MaLR -54 451 21 2415 82 0 31 chr15 70632438 70632757 -15062997 - AluSg SINE Alu -1 309 1 1927 269 66 57 chr15 70632760 70633049 -15062705 - L1M3 LINE L1 -1875 4271 3986 2177 120 7 0 chr15 70633049 70633348 -15062406 - AluSg SINE Alu -8 302 2 1927 269 66 57 chr15 70633348 70633537 -15062217 - L1M3 LINE L1 -2160 3986 3800 1678 192 26 3 chr15 70633537 70633839 -15061915 - AluJb SINE Alu 0 312 4 1927 269 66 57 chr15 70633839 70634331 -15061423 - L1M3 LINE L1 -2346 3800 3291 37 62 0 0 chr15 70634380 70634445 -15061309 + AT_rich Low_complexity Low_complexity 1 65 0 1052 121 0 0 chr15 70634462 70634603 -15061151 - AluJb SINE Alu -171 141 1 253 281 30 15 chr15 70634740 70634875 -15060879 - L1M3 LINE L1 -3203 2943 2807 414 293 106 51 chr15 70634919 70635417 -15060337 + L1MC4a LINE L1 2674 3143 -3003 2225 101 7 7 chr15 70635417 70635715 -15060039 + AluY SINE Alu 1 298 -13 414 293 106 51 chr15 70635715 70636132 -15059622 + L1MC4a LINE L1 3143 3639 -2507 754 247 69 21 chr15 70636247 70636538 -15059216 - L1ME2 LINE L1 0 6164 5860 866 282 97 87 chr15 70636599 70636893 -15058861 + L1MC4a LINE L1 3688 3978 -2168 2287 111 0 0 chr15 70636893 70637191 -15058563 - AluSx SINE Alu -14 298 1 866 282 97 87 chr15 70637191 70637300 -15058454 + L1MC4a LINE L1 3978 4084 -2062 333 0 0 0 chr15 70637300 70637337 -15058417 + (GA)n Simple_repeat Simple_repeat 2 38 0 866 282 97 87 chr15 70637337 70637840 -15057914 + L1MC4a LINE L1 4084 4581 -1565 450 0 0 0 chr15 70637840 70637890 -15057864 + (TA)n Simple_repeat Simple_repeat 2 51 0 866 282 97 87 chr15 70637890 70638524 -15057230 + L1MC4a LINE L1 4581 5262 -884 2936 230 157 25 chr15 70638531 70638873 -15056881 + L1MC4a LINE L1 5284 5579 -2229 1785 148 36 16 chr15 70638873 70639177 -15056577 - AluJo SINE Alu -2 310 1 2936 230 157 25 chr15 70639177 70639883 -15055871 + L1MC4a LINE L1 5579 6471 -1337 926 277 98 0 chr15 70639879 70640197 -15055557 + L1MC4 LINE L1 6604 6952 -1090 * 2641 219 35 1 chr15 70640193 70640886 -15054868 + L1 LINE L1 2885 3600 -2546 2550 136 103 50 chr15 70640892 70640936 -15054818 + L1MB3 LINE L1 5237 5277 -906 1497 150 45 12 chr15 70640936 70641222 -15054532 + AluJb SINE Alu 30 323 0 2550 136 103 50 chr15 70641222 70641730 -15054024 + L1MB3 LINE L1 5277 5825 -358 2187 99 0 24 chr15 70641732 70642025 -15053729 + AluSg SINE Alu 1 286 -24 535 225 0 0 chr15 70642035 70642146 -15053608 + AluJo SINE Alu 124 234 -78 686 142 3 16 chr15 70642151 70642274 -15053480 + L1MB3 LINE L1 5822 5944 -207 2056 138 7 3 chr15 70642387 70642683 -15053071 - AluJb SINE Alu -15 297 1 3117 182 37 25 chr15 70642685 70643243 -15052511 - L1MB7 LINE L1 -7 6177 5608 2459 115 25 3 chr15 70643243 70643599 -15052155 + THE1B LTR MaLR 1 364 0 3117 182 37 25 chr15 70643599 70643745 -15052009 - L1MB7 LINE L1 -576 5608 5465 456 50 25 75 chr15 70643747 70643827 -15051927 - L1MB7 LINE L1 0 6184 6109 400 231 83 25 chr15 70643828 70643949 -15051805 - L1MEd LINE L1 -4759 1962 1835 760 221 42 37 chr15 70643966 70644209 -15051545 - L1MEd LINE L1 -4850 1690 1450 311 56 0 0 chr15 70644223 70644259 -15051495 - LTR40b LTR ERVL -1 461 426 1871 147 17 7 chr15 70645254 70645554 -15050200 - AluJb SINE Alu -9 303 1 1725 121 86 7 chr15 70645617 70645897 -15049857 - AluJo SINE Alu -10 302 1 1095 128 0 0 chr15 70646155 70646303 -15049451 - FAM SINE Alu -18 167 20 2214 103 4 0 chr15 70646981 70647288 -15048466 - AluSc SINE Alu 0 308 1 851 191 46 124 chr15 70647343 70647386 -15048368 + L1MC4 LINE L1 6696 6741 -1274 1864 134 30 7 chr15 70647386 70647684 -15048070 + AluJb SINE Alu 1 305 -7 851 191 46 124 chr15 70647684 70647986 -15047768 + L1MC4 LINE L1 6741 7068 -947 316 215 43 21 chr15 70647987 70648027 -15047727 - L1PB4 LINE L1 -1 6155 6117 1826 166 3 7 chr15 70648027 70648329 -15047425 - AluJb SINE Alu -11 301 1 316 215 43 21 chr15 70648329 70648381 -15047373 - L1PB4 LINE L1 -39 6117 6061 1919 152 0 7 chr15 70648425 70648721 -15047033 + AluJb SINE Alu 13 306 -6 235 179 0 54 chr15 70648721 70648777 -15046977 + L1MC5 LINE L1 7125 7177 -784 427 175 92 33 chr15 70648787 70648907 -15046847 + L1MC5 LINE L1 7769 7895 -66 234 0 0 0 chr15 70649857 70649883 -15045871 + (A)n Simple_repeat Simple_repeat 1 26 0 302 258 97 0 chr15 70650169 70650262 -15045492 - MIR3 SINE MIR -41 167 66 297 220 0 0 chr15 70650298 70650357 -15045397 + L2 LINE L2 3255 3313 0 2319 52 14 11 chr15 70650410 70650725 -15045029 - AluY SINE Alu 0 316 1 2411 89 3 0 chr15 70650725 70651027 -15044727 - AluSp SINE Alu -10 303 1 25 0 0 0 chr15 70651027 70651052 -15044702 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr15 70651139 70651160 -15044594 + AT_rich Low_complexity Low_complexity 1 21 0 187 239 91 80 chr15 70651208 70651296 -15044458 + L2 LINE L2 1891 1979 -1335 2091 134 7 3 chr15 70651371 70651678 -15044076 - AluSx SINE Alu -4 308 1 366 231 0 26 chr15 70652929 70653007 -15042747 + Tigger7 DNA MER2_type 1 76 -657 929 142 302 14 chr15 70653007 70653219 -15042535 - Tigger7 DNA MER2_type -2139 348 76 * 1941 129 49 12 chr15 70653217 70653542 -15042212 + Tigger7 DNA MER2_type 2143 2479 -8 289 278 67 0 chr15 70654038 70654128 -15041626 + Tigger8 DNA MER2_type 206 301 -365 300 219 192 0 chr15 70654154 70654227 -15041527 + Tigger8 DNA MER2_type 343 429 -237 2087 128 7 3 chr15 70654800 70655096 -15040658 - AluSx SINE Alu -15 297 1 289 327 67 0 chr15 70655466 70655570 -15040184 - MIR3 SINE MIR -49 159 49 1133 130 0 45 chr15 70655703 70655880 -15039874 + FAM SINE Alu 1 169 -6 301 250 98 18 chr15 70655972 70656084 -15039670 - L1ME4a LINE L1 -200 5921 5801 366 213 133 53 chr15 70656178 70656328 -15039426 + MER112 DNA MER1_type 44 205 -55 26 50 0 0 chr15 70656537 70656577 -15039177 + AT_rich Low_complexity Low_complexity 1 40 0 223 361 52 33 chr15 70657031 70657244 -15038510 - L2 LINE L2 -229 3043 2827 318 297 85 8 chr15 70657708 70657826 -15037928 - L3 LINE CR1 -100 1477 1351 23 0 0 0 chr15 70658107 70658130 -15037624 + AT_rich Low_complexity Low_complexity 1 23 0 648 227 188 11 chr15 70658200 70658477 -15037277 - HAL1 LINE L1 -1146 1361 1036 591 230 32 101 chr15 70658640 70658722 -15037032 - MIR SINE MIR -31 231 145 2223 113 0 3 chr15 70658722 70659022 -15036732 - AluSg SINE Alu -11 299 1 591 230 32 101 chr15 70659022 70659187 -15036567 - MIR SINE MIR -117 145 1 493 282 134 46 chr15 70659187 70659379 -15036375 - L3 LINE CR1 -910 667 457 516 293 135 9 chr15 70659424 70659646 -15036108 + MIR SINE MIR 13 262 0 532 351 58 26 chr15 70659646 70659991 -15035763 - L3 LINE CR1 -1173 404 49 558 270 165 52 chr15 70660148 70660493 -15035261 + L2 LINE L2 102 485 -2829 2003 120 40 7 chr15 70660496 70660796 -15034958 - AluSx SINE Alu 0 312 3 1960 141 7 3 chr15 70660829 70661126 -15034628 + AluSx SINE Alu 6 303 -9 26 30 0 0 chr15 70661712 70661745 -15034009 + AT_rich Low_complexity Low_complexity 1 33 0 1304 184 3 109 chr15 70661898 70662207 -15033547 + AluSp SINE Alu 1 341 28 267 31 0 0 chr15 70662207 70662239 -15033515 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2241 95 0 3 chr15 70662241 70662525 -15033229 - AluSx SINE Alu -29 283 1 1304 184 3 109 chr15 70662525 70662560 -15033194 + AluSp SINE Alu 274 311 -2 972 127 0 8 chr15 70662575 70662709 -15033045 - FLAM_C SINE Alu 0 133 1 389 306 18 45 chr15 70664377 70664488 -15031266 - L2 LINE L2 -24 3248 3141 266 360 98 42 chr15 70664873 70665393 -15030361 - L2 LINE L2 -819 2495 1947 490 258 67 17 chr15 70666158 70666336 -15029418 + MIR SINE MIR 5 191 -71 21 0 0 0 chr15 70666648 70666669 -15029085 + AT_rich Low_complexity Low_complexity 1 21 0 191 113 88 0 chr15 70666849 70666929 -15028825 + (TA)n Simple_repeat Simple_repeat 1 87 0 1610 171 14 14 chr15 70666956 70667242 -15028512 - AluJo SINE Alu 0 312 27 22 80 0 0 chr15 70667242 70667292 -15028462 + AT_rich Low_complexity Low_complexity 1 50 0 1971 142 44 0 chr15 70667418 70667713 -15028041 + AluSx SINE Alu 1 308 -4 1463 190 25 4 chr15 70668453 70668727 -15027027 + AluJo SINE Alu 5 284 -28 237 83 0 0 chr15 70669030 70669066 -15026688 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1946 136 7 7 chr15 70669066 70669346 -15026408 - AluSx SINE Alu -32 280 1 24 32 0 0 chr15 70669647 70669678 -15026076 + AT_rich Low_complexity Low_complexity 1 31 0 3924 206 99 16 chr15 70669694 70670561 -15025193 - L1MD3 LINE L1 -26 7997 7061 2086 110 33 17 chr15 70670561 70670861 -15024893 - AluSx SINE Alu -7 305 1 3924 206 99 16 chr15 70670861 70671031 -15024723 - L1MD3 LINE L1 -962 7061 6907 514 157 12 0 chr15 70671018 70671101 -15024653 - L1MC4a LINE L1 -1113 6695 6612 * 191 191 48 0 chr15 70671173 70671215 -15024539 + MER5A DNA MER1_type 145 188 -1 2251 101 7 3 chr15 70671337 70671644 -15024110 - AluSq SINE Alu -5 308 1 492 198 41 128 chr15 70672260 70672432 -15023322 + MER5B DNA MER1_type 19 175 -3 2332 64 0 10 chr15 70672796 70673094 -15022660 - AluY SINE Alu -16 295 1 217 261 0 0 chr15 70673176 70673222 -15022532 - L2 LINE L2 -1 3312 3267 2334 109 0 0 chr15 70673822 70674133 -15021621 + AluSx SINE Alu 1 311 -1 698 151 0 59 chr15 70674213 70674332 -15021422 - FLAM_C SINE Alu -5 138 27 193 279 164 0 chr15 70674577 70674638 -15021116 + L2 LINE L2 3201 3271 -1 714 251 103 29 chr15 70675027 70675270 -15020484 - MIR SINE MIR 0 262 2 2266 100 10 0 chr15 70675433 70675743 -15020011 + AluSp SINE Alu 1 313 0 2110 135 0 0 chr15 70675755 70676058 -15019696 + AluSx SINE Alu 1 303 -9 2929 187 56 51 chr15 70676064 70676682 -15019072 - L1MB7 LINE L1 -10 6174 5550 2066 141 10 0 chr15 70676682 70676987 -15018767 - AluSx SINE Alu -4 308 1 2929 187 56 51 chr15 70676987 70677096 -15018658 - L1MB7 LINE L1 -634 5550 5443 2050 90 0 0 chr15 70677167 70677423 -15018331 + AluSx SINE Alu 1 256 -56 217 313 134 57 chr15 70677529 70677775 -15017979 - L2 LINE L2 -497 2817 2553 293 174 14 43 chr15 70677980 70678049 -15017705 - Charlie2 DNA MER1_type -6 2856 2790 282 169 52 0 chr15 70678049 70678126 -15017628 + (TA)n Simple_repeat Simple_repeat 2 82 0 189 0 0 0 chr15 70678126 70678147 -15017607 + (TG)n Simple_repeat Simple_repeat 2 22 0 1992 106 40 0 chr15 70678148 70678423 -15017331 - AluSq SINE Alu -27 286 1 606 264 0 0 chr15 70678470 70678595 -15017159 - FLAM_A SINE Alu -5 137 13 2229 176 54 65 chr15 70678645 70679132 -15016622 - Charlie2a DNA MER1_type -711 2151 1671 1804 142 0 68 chr15 70679132 70679455 -15016299 - AluJb SINE Alu -11 301 1 2229 176 54 65 chr15 70679455 70679580 -15016174 - Charlie2a DNA MER1_type -1191 1671 1546 776 168 0 58 chr15 70679583 70679757 -15015997 - FLAM_A SINE Alu 0 133 1 2005 99 36 46 chr15 70679765 70680068 -15015686 - AluSq SINE Alu -13 300 1 959 173 15 46 chr15 70680275 70680472 -15015282 - L1MB7 LINE L1 -1 6183 5993 822 153 15 27 chr15 70680475 70680655 -15015099 - L1MB7 LINE L1 -282 5896 5718 3234 139 103 49 chr15 70680967 70681501 -15014253 - L1MB8 LINE L1 0 6178 5599 2347 97 0 3 chr15 70681501 70681800 -15013954 - AluSg SINE Alu -12 298 1 3234 139 103 49 chr15 70681800 70681934 -15013820 - L1MB8 LINE L1 -579 5599 5474 24 77 0 0 chr15 70681941 70681993 -15013761 + AT_rich Low_complexity Low_complexity 1 52 0 1408 254 53 28 chr15 70682282 70682679 -15013075 - Charlie2 DNA MER1_type -2206 576 170 2382 90 3 0 chr15 70682697 70682998 -15012756 - AluSg SINE Alu -8 302 1 795 155 8 23 chr15 70683006 70683135 -15012619 - FLAM_C SINE Alu -6 127 1 1353 118 5 38 chr15 70683405 70683616 -15012138 - MER2 DNA MER2_type -137 208 5 1444 114 34 72 chr15 70683877 70683958 -15011796 + MER30 DNA MER1_type 3 86 -144 2245 103 0 3 chr15 70683958 70684249 -15011505 + AluSq SINE Alu 1 290 -23 1444 114 34 72 chr15 70684249 70684404 -15011350 + MER30 DNA MER1_type 86 230 0 2157 114 0 0 chr15 70684721 70685032 -15010722 + AluSx SINE Alu 1 311 0 1363 203 81 27 chr15 70685046 70685380 -15010374 - MLT1A1 LTR MaLR -11 354 1 21 0 0 0 chr15 70686190 70686211 -15009543 + AT_rich Low_complexity Low_complexity 1 21 0 2069 118 38 0 chr15 70686233 70686522 -15009232 + AluSx SINE Alu 1 300 -12 260 181 69 14 chr15 70686668 70686740 -15009014 - L1ME LINE L1 -253 5868 5793 298 198 198 0 chr15 70686838 70686929 -15008825 - L1ME LINE L1 -459 5662 5554 2159 118 3 10 chr15 70686938 70687251 -15008503 - AluSx SINE Alu -1 311 1 3567 181 24 40 chr15 70687883 70688153 -15007601 - L1MB7 LINE L1 -20 6164 5891 1860 132 61 24 chr15 70688153 70688448 -15007306 - AluSx SINE Alu -6 306 1 3567 181 24 40 chr15 70688448 70688607 -15007147 - L1MB7 LINE L1 -293 5891 5731 1590 167 55 0 chr15 70688607 70688900 -15006854 - AluJo SINE Alu 0 312 4 3567 181 24 40 chr15 70688900 70689227 -15006527 - L1MB7 LINE L1 -453 5731 5419 1958 111 4 0 chr15 70689267 70689528 -15006226 - AluSg SINE Alu -48 262 1 354 121 0 17 chr15 70689528 70689586 -15006168 - L1MB7 LINE L1 -737 5441 5385 2639 38 0 16 chr15 70689652 70689968 -15005786 - AluY SINE Alu 0 311 1 2232 121 0 3 chr15 70690282 70690588 -15005166 + AluSx SINE Alu 1 305 -7 330 344 25 6 chr15 70690872 70691029 -15004725 + HAL1b LINE L1 447 606 -742 234 116 0 0 chr15 70691082 70691125 -15004629 + (T)n Simple_repeat Simple_repeat 1 43 0 2169 115 7 0 chr15 70691305 70691601 -15004153 + AluJb SINE Alu 1 298 -14 189 0 0 0 chr15 70691658 70691679 -15004075 + (TA)n Simple_repeat Simple_repeat 2 22 0 315 0 0 0 chr15 70692603 70692638 -15003116 + (T)n Simple_repeat Simple_repeat 1 35 0 417 288 105 60 chr15 70694044 70694258 -15001496 - L1MC4a LINE L1 -309 5812 5650 2209 115 0 3 chr15 70694258 70694554 -15001200 - AluSx SINE Alu -17 295 1 417 288 105 60 chr15 70694554 70694624 -15001130 - L1MC4a LINE L1 -471 5650 5585 2317 93 0 43 chr15 70694698 70695020 -15000734 - AluSq SINE Alu -5 308 1 213 231 164 90 chr15 70695074 70695208 -15000546 - MIR SINE MIR -34 228 85 635 233 194 19 chr15 70695276 70695482 -15000272 - MIR SINE MIR -14 248 7 434 77 0 0 chr15 70695575 70695627 -15000127 + Alu SINE Alu 2 53 -260 2086 212 52 30 chr15 70695643 70695748 -15000006 - MER119 DNA MER1_type -108 475 374 2213 114 3 0 chr15 70695748 70696047 -14999707 - AluSp SINE Alu -11 302 3 2086 212 52 30 chr15 70696047 70696404 -14999350 - MER119 DNA MER1_type -209 374 3 226 180 27 45 chr15 70697308 70697419 -14998335 + (TTAA)n Simple_repeat Simple_repeat 1 109 0 2163 112 7 3 chr15 70697811 70698105 -14997649 + AluSq SINE Alu 1 295 -18 1151 256 83 42 chr15 70698241 70698828 -14996926 - L2 LINE L2 -1 3312 2347 1566 226 207 25 chr15 70698904 70698993 -14996761 - L2 LINE L2 -1912 1402 1331 741 205 62 62 chr15 70698993 70699217 -14996537 - MER58A DNA MER1_type 0 224 1 1566 226 207 25 chr15 70699217 70699746 -14996008 - L2 LINE L2 -1983 1331 660 2346 90 7 7 chr15 70699746 70700045 -14995709 + AluSq SINE Alu 1 299 -14 1566 226 207 25 chr15 70700045 70700068 -14995686 - L2 LINE L2 -2654 660 643 215 132 26 0 chr15 70700505 70700543 -14995211 + (TG)n Simple_repeat Simple_repeat 2 40 0 2358 102 0 3 chr15 70701299 70701603 -14994151 + AluSq SINE Alu 1 303 -10 1395 88 0 0 chr15 70701608 70701778 -14993976 + AluSc SINE Alu 125 294 -15 834 299 139 53 chr15 70701781 70702293 -14993461 + HAL1 LINE L1 876 1431 -1076 433 271 112 56 chr15 70702295 70702580 -14993174 - MER34 LTR ERV1 0 776 353 236 272 114 9 chr15 70702606 70702720 -14993034 - LTR48 LTR ERV1 -484 303 178 * 240 231 0 0 chr15 70702713 70702765 -14992989 - MER34 LTR ERV1 -465 77 26 2363 78 10 0 chr15 70702997 70703290 -14992464 + AluSp SINE Alu 1 296 -17 2196 125 0 3 chr15 70703462 70703757 -14991997 + AluSx SINE Alu 1 294 -18 331 313 84 33 chr15 70704136 70704350 -14991404 + HAL1 LINE L1 2227 2451 -56 1916 164 0 3 chr15 70704355 70704648 -14991106 + AluJo SINE Alu 3 294 -18 1307 190 3 110 chr15 70705240 70705365 -14990389 + AluSp SINE Alu 1 138 -175 1166 120 0 0 chr15 70705365 70705549 -14990205 + L1MA1 LINE L1 6119 6302 0 1307 190 3 110 chr15 70705549 70705760 -14989994 + AluSp SINE Alu 138 301 -12 246 327 154 0 chr15 70706529 70706633 -14989121 - L2 LINE L2 0 3272 3153 2062 146 0 16 chr15 70707037 70707345 -14988409 - AluJb SINE Alu -9 303 1 606 61 0 12 chr15 70707439 70707521 -14988233 - AluSg/x SINE Alu -87 223 143 578 207 176 0 chr15 70707521 70707714 -14988040 + HsTC2 DNA Tc2 1669 1895 -3 2382 94 0 0 chr15 70707743 70708040 -14987714 + AluSx SINE Alu 1 297 -15 1128 226 149 12 chr15 70708330 70708754 -14987000 - HsTC2 DNA Tc2 -1 1897 1240 * 1652 223 63 40 chr15 70708752 70708896 -14986858 - HsTC2 DNA Tc2 -1412 486 347 1691 180 14 7 chr15 70708896 70709209 -14986545 - AluJo SINE Alu 0 315 1 1652 223 63 40 chr15 70709209 70709538 -14986216 - HsTC2 DNA Tc2 -1551 347 1 407 302 161 4 chr15 70709821 70710069 -14985685 + L2 LINE L2 2418 2704 -610 239 304 33 0 chr15 70710204 70710296 -14985458 - L2 LINE L2 -1009 2305 2211 191 308 0 0 chr15 70710528 70710580 -14985174 + L2 LINE L2 3221 3272 0 274 263 10 40 chr15 70711035 70711134 -14984620 + MIR SINE MIR 36 131 -77 1733 157 57 7 chr15 70711583 70711863 -14983891 - AluSx SINE Alu -16 296 3 1947 158 3 7 chr15 70713164 70713468 -14982286 - AluJb SINE Alu -9 303 1 209 246 72 14 chr15 70714494 70714563 -14981191 - MIR3 SINE MIR -22 186 114 2057 122 20 0 chr15 70714903 70715198 -14980556 - AluSq SINE Alu -12 301 1 361 335 131 0 chr15 70717050 70717310 -14978444 + L1M4 LINE L1 5081 5374 -772 2461 72 0 10 chr15 70717311 70717616 -14978138 + AluSg SINE Alu 1 302 -8 229 317 49 41 chr15 70718772 70718895 -14976859 - MIR3 SINE MIR -78 130 7 412 314 51 13 chr15 70719425 70719581 -14976173 - MIR SINE MIR -34 228 67 448 291 26 0 chr15 70719585 70719702 -14976052 - MER94 DNA DNA 0 134 15 196 289 0 0 chr15 70722205 70722250 -14973504 + L2 LINE L2 3228 3272 0 2226 98 33 26 chr15 70722505 70722812 -14972942 - AluSx SINE Alu -3 309 1 2219 109 6 10 chr15 70722834 70723147 -14972607 - AluSx SINE Alu 0 312 1 348 294 175 0 chr15 70723441 70723584 -14972170 - MER5A DNA MER1_type 0 189 22 233 179 30 45 chr15 70723619 70723686 -14972068 + MIR SINE MIR 85 150 -58 1903 134 3 34 chr15 70723687 70723985 -14971769 + AluJb SINE Alu 5 293 -19 2306 120 0 0 chr15 70724634 70724942 -14970812 - AluSx SINE Alu -4 308 1 409 182 40 81 chr15 70724965 70725064 -14970690 + MIR SINE MIR 29 123 -139 3238 74 15 20 chr15 70725096 70725302 -14970452 - LTR22A LTR ERVK 0 458 253 2171 118 0 7 chr15 70725302 70725598 -14970156 + AluSg SINE Alu 1 294 -16 3238 74 15 20 chr15 70725598 70725851 -14969903 - LTR22A LTR ERVK -205 253 1 5609 107 59 30 chr15 70726711 70728200 -14967554 + pTR5 LTR ERV1 743 2438 0 2331 88 0 7 chr15 70728951 70729246 -14966508 - AluSx SINE Alu -19 293 1 2098 125 7 0 chr15 70729933 70730222 -14965532 + AluSx SINE Alu 1 291 -21 2166 123 0 7 chr15 70730233 70730533 -14965221 + AluSc SINE Alu 1 298 -11 332 219 30 15 chr15 70730592 70730702 -14965052 + MIR SINE MIR 32 144 -64 1682 123 9 0 chr15 70731083 70731311 -14964443 + AluSx SINE Alu 44 273 -39 695 174 8 8 chr15 70731753 70731885 -14963869 + FLAM_A SINE Alu 1 132 -1 2340 103 3 0 chr15 70731918 70732230 -14963524 + AluSp SINE Alu 1 313 0 1404 109 0 0 chr15 70732230 70732414 -14963340 + AluSq SINE Alu 126 309 -4 1841 177 10 0 chr15 70732459 70732759 -14962995 + AluSx SINE Alu 1 303 -9 1570 128 4 9 chr15 70732762 70732988 -14962766 + AluSx SINE Alu 1 225 -87 226 190 103 0 chr15 70733028 70733086 -14962668 + HAL1b LINE L1 727 790 -558 2367 101 3 0 chr15 70733089 70733387 -14962367 + AluSp SINE Alu 3 301 -12 438 315 113 4 chr15 70733387 70733625 -14962129 - HAL1b LINE L1 -1013 335 72 2394 98 0 19 chr15 70733785 70734103 -14961651 - AluSx SINE Alu 0 312 1 695 174 8 8 chr15 70734136 70734268 -14961486 - FLAM_A SINE Alu -1 132 1 665 186 14 21 chr15 70734706 70734851 -14960903 - AluSg/x SINE Alu -39 270 127 824 221 5 0 chr15 70784851 70785041 -14910713 + AluSp SINE Alu 95 285 -28 246 180 16 49 chr15 70785782 70785843 -14909911 + MIR SINE MIR 122 180 -82 2097 111 7 7 chr15 70786007 70786313 -14909441 - AluSg SINE Alu -4 306 1 237 33 0 0 chr15 70786402 70786432 -14909322 + (A)n Simple_repeat Simple_repeat 1 30 0 2008 147 0 0 chr15 70786434 70786733 -14909021 + AluSx SINE Alu 5 303 -9 1051 222 11 15 chr15 70786963 70787224 -14908530 - AluJb SINE Alu -1 311 52 201 240 19 48 chr15 70787571 70787675 -14908079 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 225 264 23 31 chr15 70787738 70787867 -14907887 + C-rich Low_complexity Low_complexity 2 129 0 204 234 63 25 chr15 70787845 70788003 -14907751 + (CACCT)n Simple_repeat Simple_repeat 1 164 0 * 1599 124 4 4 chr15 70788166 70788407 -14907347 - AluSx SINE Alu -71 241 1 396 265 142 0 chr15 70788412 70788574 -14907180 - L1MC4a LINE L1 -1983 5825 5641 410 200 110 0 chr15 70789239 70789339 -14906415 + L2 LINE L2 3177 3287 -26 2009 114 14 0 chr15 70789442 70789731 -14906023 - AluSx SINE Alu -19 293 1 367 250 83 92 chr15 70790453 70790511 -14905243 + L2 LINE L2 2924 2981 -291 1242 211 68 51 chr15 70790511 70790703 -14905051 - LTR37A LTR ERV1 -3 423 236 2033 116 0 17 chr15 70790703 70791020 -14904734 + AluSq SINE Alu 1 312 0 1242 211 68 51 chr15 70791020 70791238 -14904516 - LTR37A LTR ERV1 -190 236 5 367 250 83 92 chr15 70791238 70791419 -14904335 + L2 LINE L2 2981 3161 -111 1859 140 39 0 chr15 70791420 70791705 -14904049 - AluJo SINE Alu -16 296 1 216 111 0 0 chr15 70791784 70791820 -14903934 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1683 161 0 11 chr15 70792076 70792356 -14903398 - AluJo SINE Alu -35 277 1 993 98 0 0 chr15 70792356 70792489 -14903265 - AluJo SINE Alu -177 135 3 195 283 0 0 chr15 70792888 70792934 -14902820 + L2 LINE L2 3215 3260 -12 2155 106 6 6 chr15 70792936 70793248 -14902506 + AluSx SINE Alu 1 312 0 2218 81 50 0 chr15 70793595 70793892 -14901862 + AluSp SINE Alu 2 313 0 893 148 60 0 chr15 70793915 70794064 -14901690 - FRAM SINE Alu -21 155 1 1796 147 7 7 chr15 70794070 70794370 -14901384 - AluJo SINE Alu -12 300 1 930 155 24 6 chr15 70795123 70795291 -14900463 - AluJb SINE Alu -10 302 132 2340 93 3 0 chr15 70795301 70795611 -14900143 - AluSx SINE Alu 0 312 2 2141 98 7 3 chr15 70795622 70795918 -14899836 - AluSc SINE Alu -12 297 1 463 312 105 23 chr15 70795956 70796299 -14899455 + L2 LINE L2 2389 2759 -555 804 292 52 62 chr15 70796315 70796374 -14899380 + L1M4 LINE L1 4752 4810 -1360 1787 174 13 0 chr15 70796374 70796678 -14899076 + AluJb SINE Alu 1 308 -4 804 292 52 62 chr15 70796678 70797083 -14898671 + L1M4 LINE L1 4810 5217 -953 2049 110 0 0 chr15 70797083 70797411 -14898343 + AluSg SINE Alu 1 328 0 804 292 52 62 chr15 70797411 70797597 -14898157 + L1M4 LINE L1 5217 5393 -777 1764 180 0 0 chr15 70797597 70797892 -14897862 + AluJo SINE Alu 1 295 -17 804 292 52 62 chr15 70797892 70797925 -14897829 + L1M4 LINE L1 5393 5425 -745 1932 116 8 0 chr15 70797925 70798192 -14897562 - AluSx SINE Alu -21 291 23 230 89 44 0 chr15 70798194 70798221 -14897533 + Alu SINE Alu 254 337 0 262 182 0 0 chr15 70798221 70798276 -14897478 + GA-rich Low_complexity Low_complexity 2 180 0 767 204 16 69 chr15 70799024 70799269 -14896485 - AluSc SINE Alu -77 232 1 2221 95 0 19 chr15 70799269 70799585 -14896169 - AluSp SINE Alu -3 310 1 2208 118 0 16 chr15 70799585 70799899 -14895855 - AluSx SINE Alu -3 309 1 1786 184 0 0 chr15 70800041 70800353 -14895401 + AluJb SINE Alu 1 312 0 253 281 84 12 chr15 70800388 70800555 -14895199 + L1M4 LINE L1 5218 5396 -750 1629 209 0 0 chr15 70800557 70800864 -14894890 + AluJb SINE Alu 1 307 -5 1893 137 0 3 chr15 70801461 70801745 -14894009 - AluSx SINE Alu -7 305 23 306 282 59 0 chr15 70801771 70801856 -14893898 + L1M4 LINE L1 3094 3183 -2963 416 262 19 19 chr15 70801887 70801994 -14893760 + MIR SINE MIR 41 147 -115 299 234 0 13 chr15 70802238 70802315 -14893439 + MER20 DNA MER1_type 3 78 -141 2298 100 0 6 chr15 70803184 70803495 -14892259 + AluSc SINE Alu 1 309 0 331 198 38 66 chr15 70803504 70803610 -14892144 - L1ME4a LINE L1 -94 6027 5925 1789 157 0 7 chr15 70803674 70803987 -14891767 + AluJb SINE Alu 1 311 0 2285 105 0 0 chr15 70803993 70804298 -14891456 + AluSx SINE Alu 1 305 -7 405 0 0 0 chr15 70804544 70804589 -14891165 + (CA)n Simple_repeat Simple_repeat 1 45 0 420 372 35 0 chr15 70804864 70805009 -14890745 - MIR SINE MIR -19 243 94 199 318 16 0 chr15 70805004 70805067 -14890687 - MIR3 SINE MIR -52 156 93 * 231 343 0 39 chr15 70805451 70805553 -14890201 + MIR SINE MIR 45 142 -66 2122 126 7 0 chr15 70805637 70805938 -14889816 + AluSx SINE Alu 1 303 -9 1724 131 35 0 chr15 70805938 70806198 -14889556 - 7SLRNA srpRNA srpRNA -31 289 21 2069 114 0 26 chr15 70806242 70806549 -14889205 - AluSx SINE Alu -13 299 1 908 118 0 30 chr15 70807144 70807279 -14888475 + FLAM_C SINE Alu 1 131 -2 31 0 0 0 chr15 70807279 70807310 -14888444 + AT_rich Low_complexity Low_complexity 1 31 0 447 305 21 7 chr15 70807679 70807820 -14887934 - L3 LINE CR1 -3 1574 1432 1092 282 79 20 chr15 70807896 70808339 -14887415 - L2 LINE L2 -2 3311 2843 2176 121 0 0 chr15 70808406 70808703 -14887051 + AluSg SINE Alu 3 299 -11 1128 117 31 0 chr15 70808703 70808866 -14886888 + AluSg/x SINE Alu 134 301 -11 2772 16 0 0 chr15 70808877 70809187 -14886567 + AluY SINE Alu 1 310 -1 2262 103 0 0 chr15 70810141 70810451 -14885303 - AluSx SINE Alu -1 311 2 670 171 23 47 chr15 70810475 70810604 -14885150 - AluJb SINE Alu -186 126 1 701 282 45 20 chr15 70811043 70811245 -14884509 + MIR SINE MIR 31 237 -25 2302 96 0 3 chr15 70811795 70812107 -14883647 + AluY SINE Alu 1 311 0 2207 112 0 0 chr15 70812119 70812414 -14883340 + AluSx SINE Alu 1 295 -17 307 346 39 8 chr15 70812449 70812579 -14883175 + L1MC4a LINE L1 5940 6073 -1735 409 250 46 0 chr15 70813559 70813667 -14882087 - MIR SINE MIR -103 159 47 1488 194 6 41 chr15 70813765 70814085 -14881669 + AluJo SINE Alu 1 309 -3 520 284 119 14 chr15 70814233 70814451 -14881303 + MIR SINE MIR 8 248 -14 1643 102 105 23 chr15 70814743 70815009 -14880745 + AluSq SINE Alu 9 296 -17 643 144 106 38 chr15 70815161 70815293 -14880461 + FLAM_C SINE Alu 2 142 -1 2269 92 0 7 chr15 70815294 70815597 -14880157 + AluSx SINE Alu 1 301 -11 666 328 173 4 chr15 70815652 70816124 -14879630 + L2 LINE L2 2754 3313 0 860 201 0 0 chr15 70816907 70817061 -14878693 - L1MA10 LINE L1 -1 6333 6180 1149 212 14 5 chr15 70817435 70817652 -14878102 + MER20 DNA MER1_type 1 219 0 1776 139 3 40 chr15 70817688 70818011 -14877743 + AluSx SINE Alu 1 311 -1 296 246 83 56 chr15 70820145 70820257 -14875497 - MIR SINE MIR -62 146 38 556 188 0 166 chr15 70820290 70820471 -14875283 + MIR SINE MIR 102 252 -10 499 303 54 46 chr15 70820713 70820954 -14874800 + MIR SINE MIR 5 247 -15 183 80 0 0 chr15 70821556 70821581 -14874173 + (CGG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr15 70821645 70821668 -14874086 + (CCG)n Simple_repeat Simple_repeat 3 25 0 212 235 52 7 chr15 70821690 70821826 -14873928 + (CCG)n Simple_repeat Simple_repeat 1 142 0 24 100 0 0 chr15 70821826 70821906 -14873848 + GC_rich Low_complexity Low_complexity 1 80 0 24 0 0 0 chr15 70821953 70821977 -14873777 + GC_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 70822538 70822561 -14873193 + GC_rich Low_complexity Low_complexity 1 23 0 338 195 24 24 chr15 70822987 70823069 -14872685 - MIR SINE MIR -67 141 60 411 234 60 47 chr15 70825067 70825302 -14870452 - L1ME4a LINE L1 -37 6084 5847 2101 118 3 3 chr15 70825366 70825670 -14870084 - AluSx SINE Alu -8 304 1 624 108 0 0 chr15 70828830 70828913 -14866841 - FLAM SINE Alu -18 125 43 260 268 81 32 chr15 70829549 70829672 -14866082 - MIR3 SINE MIR -45 163 35 317 231 144 0 chr15 70830720 70830824 -14864930 - MER20 DNA MER1_type -17 202 84 23 68 0 0 chr15 70834563 70834607 -14861147 + GC_rich Low_complexity Low_complexity 1 44 0 277 257 80 44 chr15 70836334 70836447 -14859307 + MIR SINE MIR 16 132 -130 711 137 111 26 chr15 70836585 70836738 -14859016 + MER58A DNA MER1_type 45 210 -14 259 271 129 0 chr15 70836766 70836851 -14858903 - MIR SINE MIR -69 139 44 794 251 0 0 chr15 70836879 70837046 -14858708 - MER45A DNA AcHobo -11 167 1 1641 256 100 29 chr15 70837926 70838428 -14857326 - L2 LINE L2 -46 3267 2680 2128 124 0 13 chr15 70838428 70838743 -14857011 - AluSx SINE Alu -1 311 1 1641 256 100 29 chr15 70838743 70839091 -14856663 - L2 LINE L2 -633 2680 2358 1824 103 21 48 chr15 70839091 70839433 -14856321 - AluSx SINE Alu 0 334 1 338 304 59 37 chr15 70839451 70839586 -14856168 - MIR SINE MIR -106 156 19 1841 135 0 34 chr15 70844522 70844648 -14851106 + AluJb SINE Alu 10 139 -173 2348 102 0 0 chr15 70844648 70844961 -14850793 + AluSq SINE Alu 1 313 0 1841 135 0 34 chr15 70844961 70845131 -14850623 + AluJb SINE Alu 139 296 -16 2004 145 3 3 chr15 70845132 70845436 -14850318 + AluSx SINE Alu 3 306 -6 325 265 289 12 chr15 70845444 70845610 -14850144 - MIR SINE MIR -5 257 46 205 359 111 34 chr15 70846221 70846417 -14849337 - L2 LINE L2 -788 2526 2346 1671 149 12 67 chr15 70846417 70846746 -14849008 + AluJb SINE Alu 1 311 -1 205 359 111 34 chr15 70846746 70846900 -14848854 - L2 LINE L2 -968 2346 2149 1988 128 0 31 chr15 70847210 70847530 -14848224 + AluSq SINE Alu 1 310 -3 2405 90 0 0 chr15 70847752 70848062 -14847692 - AluSx SINE Alu -2 310 1 437 228 117 143 chr15 70848713 70849254 -14846500 + L1MCc LINE L1 1279 1998 -4943 710 174 50 50 chr15 70849258 70849330 -14846424 + L1ME2 LINE L1 5803 5874 -290 2044 117 24 0 chr15 70849330 70849621 -14846133 + AluSx SINE Alu 1 298 -14 710 174 50 50 chr15 70849621 70849766 -14845988 + L1ME2 LINE L1 5873 6020 -144 305 259 25 0 chr15 70849767 70849848 -14845906 + REP3 LTR ERV 1 83 -479 603 218 28 0 chr15 70849896 70850038 -14845716 + L1ME2 LINE L1 6019 6164 0 428 241 177 89 chr15 70850039 70850085 -14845669 + HAL1 LINE L1 1038 1079 -1428 2092 126 7 0 chr15 70850085 70850387 -14845367 + AluSp SINE Alu 1 304 -9 428 241 177 89 chr15 70850387 70850402 -14845352 + HAL1 LINE L1 1079 1091 -1416 2359 101 0 0 chr15 70850402 70850709 -14845045 + AluSx SINE Alu 1 307 -5 428 241 177 89 chr15 70850709 70850849 -14844905 + HAL1 LINE L1 1091 1258 -1249 812 185 43 0 chr15 70850887 70851049 -14844705 + FRAM SINE Alu 1 168 -8 1427 193 7 46 chr15 70851050 70851191 -14844563 + AluJb SINE Alu 1 146 -166 2373 83 3 6 chr15 70851191 70851505 -14844249 + AluSq SINE Alu 1 313 0 1427 193 7 46 chr15 70851505 70851669 -14844085 + AluJb SINE Alu 146 294 -18 2226 42 48 14 chr15 70851695 70851984 -14843770 + L1PA8 LINE L1 5866 6164 -8 306 320 73 60 chr15 70852057 70852163 -14843591 + L1ME LINE L1 5544 5647 -474 1743 166 46 14 chr15 70852163 70852512 -14843242 - MLT1A1 LTR MaLR -1 364 5 306 320 73 60 chr15 70852512 70852639 -14843115 + L1ME LINE L1 5647 5780 -341 21 0 0 0 chr15 70853040 70853061 -14842693 + GC_rich Low_complexity Low_complexity 1 21 0 2254 96 0 16 chr15 70854926 70855238 -14840516 - AluSx SINE Alu -5 307 1 377 235 189 0 chr15 70855238 70855370 -14840384 - MER117 DNA MER1_type -40 157 1 271 383 244 2 chr15 70858441 70858843 -14836911 + L3 LINE CR1 190 688 -889 * 478 256 100 96 chr15 70858834 70858909 -14836845 - MIR SINE MIR -10 252 179 2218 94 19 13 chr15 70858909 70859218 -14836536 - AluSx SINE Alu -1 311 1 478 256 100 96 chr15 70859218 70859392 -14836362 - MIR SINE MIR -83 179 2 211 362 55 37 chr15 70859441 70859604 -14836150 + L3 LINE CR1 1353 1518 -59 2343 78 0 0 chr15 70859949 70860245 -14835509 - AluY SINE Alu -15 296 1 236 328 92 35 chr15 70862148 70862322 -14833432 - MIR SINE MIR -9 253 70 1643 156 42 7 chr15 70864399 70864687 -14831067 + AluJo SINE Alu 1 298 -14 2217 105 0 0 chr15 70864855 70865160 -14830594 - AluSg SINE Alu -5 305 1 273 311 19 10 chr15 70866226 70866329 -14829425 + MIR3 SINE MIR 94 197 -11 186 313 183 17 chr15 70867087 70867202 -14828552 - L2 LINE L2 -2 3270 3137 756 253 105 5 chr15 70867425 70867615 -14828139 - MER3 DNA MER1_type 0 209 1 263 330 70 44 chr15 70867615 70867885 -14827869 - L2 LINE L2 -476 2838 2562 336 274 36 0 chr15 70869420 70869504 -14826250 - L2 LINE L2 -39 3233 3147 1972 75 4 0 chr15 70869628 70869881 -14825873 - AluSq SINE Alu -59 254 1 493 329 99 0 chr15 70871204 70871566 -14824188 + L1M4 LINE L1 3875 4272 -1874 458 348 136 56 chr15 70871602 70871979 -14823775 + L1M4 LINE L1 4545 5001 -1145 1895 104 42 28 chr15 70871979 70872267 -14823487 + AluSx SINE Alu 1 292 -20 458 348 136 56 chr15 70872267 70872520 -14823234 + L1M4 LINE L1 5001 5232 -914 245 307 13 0 chr15 70872714 70872789 -14822965 + MIR SINE MIR 186 261 -1 1513 215 0 13 chr15 70873009 70873307 -14822447 + AluSp SINE Alu 3 296 -7 2191 113 0 6 chr15 70874408 70874719 -14821035 + AluSx SINE Alu 1 309 -3 300 256 85 54 chr15 70874929 70875058 -14820696 - MER5A DNA MER1_type -51 138 6 2363 97 0 0 chr15 70875104 70875412 -14820342 - AluSx SINE Alu -4 308 1 1426 215 59 6 chr15 70876282 70876622 -14819132 + MLT1A1 LTR MaLR 8 365 0 2127 85 0 3 chr15 70876739 70877021 -14818733 + AluSx SINE Alu 30 310 -2 414 291 53 59 chr15 70877350 70877724 -14818030 + L1MDa LINE L1 879 1250 -4869 2183 79 0 10 chr15 70877750 70878042 -14817712 + AluY SINE Alu 1 289 -22 2304 77 3 0 chr15 70878047 70878346 -14817408 + AluY SINE Alu 1 300 -11 1376 168 21 109 chr15 70878372 70878712 -14817042 + AluYb8 SINE Alu 1 310 -8 2105 109 7 0 chr15 70878755 70879048 -14816706 + AluSx SINE Alu 1 295 -17 234 278 136 21 chr15 70879155 70879346 -14816408 + HAL1 LINE L1 1447 1659 -848 1508 85 0 5 chr15 70879528 70879728 -14816026 + AluY SINE Alu 94 292 -19 227 221 130 0 chr15 70879728 70879805 -14815949 - L1MC4 LINE L1 -1340 6702 6616 1130 148 6 0 chr15 70879828 70880004 -14815750 + FRAM SINE Alu 1 169 -7 2213 102 0 0 chr15 70880005 70880298 -14815456 + AluSx SINE Alu 3 295 -17 467 335 122 8 chr15 70880390 70880655 -14815099 + L1MDa LINE L1 1355 1648 -842 961 111 7 0 chr15 70880786 70880921 -14814833 + AluSq/x SINE Alu 1 136 -176 367 331 49 7 chr15 70880922 70881064 -14814690 + L1MC4a LINE L1 4864 5011 -1135 391 205 24 55 chr15 70881068 70881195 -14814559 + L1MA9 LINE L1 6140 6262 -50 531 202 98 6 chr15 70881220 70881272 -14814482 + L1MC4a LINE L1 4981 5027 -1119 1856 118 0 0 chr15 70881272 70881542 -14814212 + AluSp SINE Alu 36 305 -8 531 202 98 6 chr15 70881542 70881672 -14814082 + L1MC4a LINE L1 5027 5180 -966 2256 85 0 13 chr15 70882319 70882625 -14813129 - AluSx SINE Alu -10 302 1 286 294 224 0 chr15 70884163 70884306 -14811448 + MIR SINE MIR 73 247 -15 730 347 48 9 chr15 70888636 70889020 -14806734 + L1MC4a LINE L1 5488 5891 -1917 1790 178 0 13 chr15 70889020 70889329 -14806425 + AluJo SINE Alu 1 305 -7 730 347 48 9 chr15 70889329 70889365 -14806389 + L1MC4a LINE L1 5891 5924 -1884 2143 111 0 0 chr15 70889444 70889742 -14806012 - AluY SINE Alu -13 298 1 24 0 0 0 chr15 70889743 70889767 -14805987 + AT_rich Low_complexity Low_complexity 1 24 0 1453 175 94 11 chr15 70889767 70890053 -14805701 - AluJb SINE Alu -2 310 1 703 278 21 21 chr15 70890369 70890560 -14805194 + MER117 DNA MER1_type 3 193 -4 2135 79 22 0 chr15 70890621 70890928 -14804826 - AluSx SINE Alu 0 313 1 2179 109 0 3 chr15 70890933 70891237 -14804517 - AluSq SINE Alu -10 303 1 262 294 71 0 chr15 70891952 70892037 -14803717 - L2 LINE L2 -12 3260 3170 259 305 73 56 chr15 70892020 70892220 -14803534 - MIR SINE MIR -38 224 17 * 336 200 0 0 chr15 70892480 70892555 -14803199 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 2040 100 7 0 chr15 70892597 70892903 -14802851 + AluSx SINE Alu 11 318 0 215 245 0 19 chr15 70893530 70893583 -14802171 - MIR SINE MIR -163 99 48 2530 64 0 0 chr15 70893634 70893945 -14801809 + AluY SINE Alu 1 311 0 1449 196 79 7 chr15 70895122 70895402 -14800352 + AluJb SINE Alu 1 300 -2 942 182 13 0 chr15 70896327 70896486 -14799268 + AluJb SINE Alu 129 289 -23 2556 60 7 0 chr15 70898170 70898470 -14797284 - AluY SINE Alu -9 302 1 209 325 0 62 chr15 70899230 70899310 -14796444 + L2 LINE L2 3184 3258 -14 716 216 85 35 chr15 70900082 70900281 -14795473 + MIR SINE MIR 27 235 -27 2200 123 3 0 chr15 70900299 70900599 -14795155 - AluSg SINE Alu -9 301 1 308 265 53 68 chr15 70900616 70900748 -14795006 + MIR SINE MIR 74 203 -59 759 161 8 23 chr15 70900775 70900905 -14794849 + FLAM_C SINE Alu 1 128 -5 1116 103 32 0 chr15 70900907 70901063 -14794691 + L1PA11 LINE L1 6011 6171 -3 1110 132 0 24 chr15 70901070 70901237 -14794517 + AluJb SINE Alu 141 303 -9 2325 151 68 32 chr15 70901485 70901719 -14794035 - MSTA LTR MaLR -1 427 170 2235 97 0 17 chr15 70901719 70902019 -14793735 - AluSx SINE Alu -17 295 1 2325 151 68 32 chr15 70902019 70902195 -14793559 - MSTA LTR MaLR -258 170 2 1122 162 125 73 chr15 70903628 70903900 -14791854 + AluSx SINE Alu 3 288 -14 907 86 0 58 chr15 70904870 70905009 -14790745 + FLAM_C SINE Alu 3 133 0 185 315 11 22 chr15 70905861 70905950 -14789804 - MIR SINE MIR -92 170 83 21 57 0 0 chr15 70905971 70906006 -14789748 + GC_rich Low_complexity Low_complexity 1 35 0 242 186 35 124 chr15 70907575 70907636 -14788118 - MER5B DNA MER1_type -4 174 126 2478 88 0 3 chr15 70907636 70907944 -14787810 + AluSg SINE Alu 1 307 -3 242 186 35 124 chr15 70907944 70907995 -14787759 - MER5B DNA MER1_type -52 126 72 1425 129 4 30 chr15 70908023 70908255 -14787499 + AluJb SINE Alu 87 312 0 513 255 95 82 chr15 70908344 70908587 -14787167 + MIR SINE MIR 3 248 -14 743 203 8 8 chr15 70908742 70908875 -14786879 - FLAM_C SINE Alu 0 133 1 351 240 15 168 chr15 70911188 70911384 -14784370 + MER5B DNA MER1_type 5 170 -8 476 272 181 3 chr15 70911469 70911778 -14783976 - L1ME3A LINE L1 -220 5950 5587 271 172 0 0 chr15 70911836 70911894 -14783860 - L1ME3A LINE L1 -730 5434 5377 474 179 13 0 chr15 70911900 70911978 -14783776 + AluJ/FLAM SINE Alu 2 80 -232 280 210 118 17 chr15 70911978 70912097 -14783657 - L1ME3A LINE L1 -780 5384 5254 270 239 15 15 chr15 70912174 70912241 -14783513 - MIR SINE MIR -10 252 186 3240 167 64 36 chr15 70912336 70913067 -14782687 - L1MB3 LINE L1 0 6183 5432 1260 177 154 11 chr15 70913068 70913328 -14782426 - AluSg SINE Alu -13 297 1 2296 198 71 70 chr15 70913340 70913591 -14782163 + L1ME1 LINE L1 5316 5565 -601 2302 113 0 0 chr15 70913591 70913884 -14781870 - AluSg SINE Alu -17 293 1 2296 198 71 70 chr15 70913884 70914285 -14781469 + L1ME1 LINE L1 5565 5972 -194 2155 129 7 13 chr15 70914285 70914595 -14781159 + AluSc SINE Alu 1 308 -1 2296 198 71 70 chr15 70914595 70914699 -14781055 + L1ME1 LINE L1 5972 6074 -92 2130 96 43 0 chr15 70914932 70915213 -14780541 + AluSx SINE Alu 1 293 -19 26 50 0 0 chr15 70915353 70915393 -14780361 + AT_rich Low_complexity Low_complexity 1 40 0 1591 113 77 124 chr15 70916765 70917129 -14778625 + MER7A DNA MER2_type 1 345 -1 342 0 0 0 chr15 70919055 70919093 -14776661 + (TA)n Simple_repeat Simple_repeat 2 39 0 811 146 24 0 chr15 70919095 70919218 -14776536 + FLAM_C SINE Alu 1 126 -7 1489 226 91 65 chr15 70920010 70920562 -14775192 + L1ME1 LINE L1 5539 6104 -62 1787 177 14 0 chr15 70920590 70920873 -14774881 - AluJb SINE Alu -25 287 1 27 0 0 0 chr15 70920878 70920905 -14774849 + AT_rich Low_complexity Low_complexity 1 27 0 948 107 43 7 chr15 70920905 70921045 -14774709 + AluSp SINE Alu 36 180 -133 2253 108 0 0 chr15 70921045 70921341 -14774413 + AluSx SINE Alu 9 304 -8 968 99 0 63 chr15 70921350 70921492 -14774262 + AluJ SINE Alu 1 133 -169 983 184 6 6 chr15 70921511 70921685 -14774069 + AluJ SINE Alu 120 293 -19 2178 107 21 0 chr15 70921753 70922043 -14773711 + AluSp SINE Alu 1 296 -17 3614 184 72 65 chr15 70922398 70923360 -14772394 + LTR5 LTR ERVK 2 969 0 683 225 70 66 chr15 70924321 70924409 -14771345 + MIR SINE MIR 18 104 -158 1947 80 95 4 chr15 70924409 70924673 -14771081 - AluSg SINE Alu -22 288 1 683 225 70 66 chr15 70924673 70924828 -14770926 + MIR SINE MIR 104 262 0 713 117 0 0 chr15 70924892 70924995 -14770759 + MLT1B LTR MaLR 8 110 -280 670 191 9 0 chr15 70924995 70925110 -14770644 + FLAM_C SINE Alu 2 117 -26 1153 150 89 28 chr15 70925122 70925369 -14770385 + MLT1B LTR MaLR 96 357 -33 1705 91 82 0 chr15 70925370 70925601 -14770153 - AluSg SINE Alu -2 308 59 271 86 0 0 chr15 70925603 70925638 -14770116 - AluSg SINE Alu -207 93 59 695 147 0 0 chr15 70925667 70925769 -14769985 - AluSg1 SINE Alu -206 103 2 279 125 0 0 chr15 70925769 70925809 -14769945 + MLT1B LTR MaLR 351 390 0 1844 141 38 0 chr15 70926141 70926432 -14769322 + AluSx SINE Alu 2 303 -9 571 121 44 0 chr15 70926505 70926596 -14769158 - HY3 scRNA scRNA -5 96 2 2437 69 0 16 chr15 70926868 70927171 -14768583 - AluSc SINE Alu -5 304 7 299 333 42 17 chr15 70927244 70927364 -14768390 + MIR3 SINE MIR 67 189 -19 226 261 29 0 chr15 70927370 70927439 -14768315 - MER96 DNA MER1_type? -97 78 8 663 245 148 51 chr15 70927536 70927761 -14767993 + MLT1J LTR MaLR 3 205 -306 2389 97 0 7 chr15 70927761 70928071 -14767683 + AluSq SINE Alu 1 308 -5 663 245 148 51 chr15 70928071 70928277 -14767477 + MLT1J LTR MaLR 205 476 -35 344 268 14 72 chr15 70928995 70929133 -14766621 + MIR SINE MIR 28 157 -105 569 195 133 0 chr15 70929398 70929511 -14766243 + FLAM_C SINE Alu 1 128 -5 2039 116 51 7 chr15 70929807 70930100 -14765654 - AluSx SINE Alu -6 306 1 1154 131 37 57 chr15 70931487 70931732 -14764022 - L1MB2 LINE L1 -3 6168 5929 2242 114 0 0 chr15 70931761 70932060 -14763694 + AluSg SINE Alu 1 299 -11 2223 136 0 0 chr15 70933513 70933823 -14761931 - AluSx SINE Alu -2 310 1 2109 152 0 0 chr15 70934516 70934825 -14760929 - AluSx SINE Alu -3 309 1 1434 114 0 0 chr15 70934841 70935034 -14760720 - AluSg/x SINE Alu 0 310 118 493 51 0 0 chr15 70935047 70935106 -14760648 - Alu SINE Alu -257 61 3 909 103 0 0 chr15 70935166 70935282 -14760472 - AluSx SINE Alu -197 116 1 1164 214 126 21 chr15 70935313 70935641 -14760113 + L1ME1 LINE L1 5461 5834 -336 1885 97 40 57 chr15 70935641 70935939 -14759815 + AluSx SINE Alu 1 293 -19 1164 214 126 21 chr15 70935939 70935984 -14759770 + L1ME1 LINE L1 5834 5873 -297 24 0 0 0 chr15 70935986 70936010 -14759744 + AT_rich Low_complexity Low_complexity 1 24 0 357 200 182 0 chr15 70936012 70936122 -14759632 + L1ME1 LINE L1 6028 6157 -9 582 209 185 77 chr15 70936206 70936286 -14759468 + L1ME3A LINE L1 5871 5941 -229 1592 182 56 23 chr15 70936286 70936588 -14759166 + AluJo SINE Alu 1 312 0 582 209 185 77 chr15 70936588 70936766 -14758988 + L1ME3A LINE L1 5941 6157 -13 2419 141 144 45 chr15 70938287 70938558 -14757196 + L1MB8 LINE L1 5321 5564 -614 1648 163 39 25 chr15 70938558 70938840 -14756914 - AluJo SINE Alu -26 286 1 2419 141 144 45 chr15 70938840 70939166 -14756588 + L1MB8 LINE L1 5564 5977 -201 363 146 0 0 chr15 70939173 70939228 -14756526 - Alu SINE Alu -14 288 234 314 60 0 20 chr15 70939328 70939378 -14756376 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 461 302 119 22 chr15 70939441 70939709 -14756045 - MLT1K LTR MaLR -104 484 191 286 307 206 21 chr15 70939809 70940047 -14755707 - L2 LINE L2 -182 3090 2809 282 182 15 0 chr15 70940144 70940210 -14755544 + MER63 DNA MER1_type 870 936 -125 297 253 21 0 chr15 70940210 70940305 -14755449 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 204 309 0 0 chr15 70940442 70940581 -14755173 + (CA)n Simple_repeat Simple_repeat 2 140 0 181 267 0 22 chr15 70940595 70940640 -14755114 + MER5A DNA MER1_type 46 89 -100 437 171 0 0 chr15 70940682 70940758 -14754996 - MLT1A1 LTR MaLR 0 365 290 743 183 17 0 chr15 70940760 70940880 -14754874 + FLAM_C SINE Alu 3 124 -19 902 148 79 132 chr15 70940901 70941219 -14754535 - MLT1A1 LTR MaLR -61 304 4 368 277 136 60 chr15 70942075 70942259 -14753495 + L1MCa LINE L1 1431 1628 -4798 1091 99 50 11 chr15 70942282 70942464 -14753290 + L1PA2 LINE L1 5966 6154 -1 812 233 19 8 chr15 70942500 70942719 -14753035 - MLT1D LTR MaLR -320 185 1 869 335 48 21 chr15 70943189 70943706 -14752048 + ERVL LTR ERVL 2140 2670 -3094 286 225 150 25 chr15 70943996 70944076 -14751678 + ERVL LTR ERVL 3008 3097 -2667 277 246 69 31 chr15 70944098 70944228 -14751526 + L1M4b LINE L1 29 163 -6696 3220 74 32 5 chr15 70944347 70944831 -14750923 + L1PA7 LINE L1 5235 5730 -424 2977 92 2 12 chr15 70944921 70945374 -14750380 + L1PA7 LINE L1 5744 6192 0 2382 89 0 3 chr15 70946088 70946392 -14749362 - AluY SINE Alu -8 303 1 1133 205 158 16 chr15 70946405 70946659 -14749095 - AluJo SINE Alu -12 290 1 1897 213 94 72 chr15 70946731 70947202 -14748552 - MLT1E LTR MaLR -8 585 97 1857 121 0 38 chr15 70947202 70947492 -14748262 + AluSx SINE Alu 28 306 -6 1897 213 94 72 chr15 70947492 70947592 -14748162 - MLT1E LTR MaLR -496 97 1 2031 118 3 3 chr15 70947876 70948172 -14747582 + AluSx SINE Alu 1 296 -16 1742 167 0 3 chr15 70948596 70948889 -14746865 + AluJo SINE Alu 1 292 -20 569 213 15 15 chr15 70949415 70949551 -14746203 - FLAM_C SINE Alu 0 143 8 774 127 0 0 chr15 70950950 70951060 -14744694 + AluSq/x SINE Alu 3 112 -201 980 131 173 0 chr15 70951721 70951912 -14743842 - 7SLRNA srpRNA srpRNA -2 318 95 249 325 230 10 chr15 70952671 70952871 -14742883 - MIR SINE MIR -6 256 13 235 226 38 0 chr15 70953609 70953662 -14742092 - MIR SINE MIR -59 149 95 1918 138 10 0 chr15 70954551 70954848 -14740906 + AluJb SINE Alu 1 300 -12 221 305 70 30 chr15 70954958 70955079 -14740675 - MER5A DNA MER1_type -32 146 20 833 73 0 0 chr15 70955659 70955768 -14739986 + AluSp/q SINE Alu 199 307 -6 281 252 79 0 chr15 70955774 70955913 -14739841 + L1P5 LINE L1 5294 5443 -711 313 335 46 77 chr15 70955923 70956183 -14739571 + L1MB4 LINE L1 5488 5739 -423 26 30 0 0 chr15 70956408 70956441 -14739313 + AT_rich Low_complexity Low_complexity 1 33 0 2138 99 3 6 chr15 70956573 70956886 -14738868 - AluSx SINE Alu 0 312 1 1068 99 0 41 chr15 70956895 70957066 -14738688 - L1PA4 LINE L1 0 6155 5992 252 301 81 7 chr15 70957483 70957619 -14738135 - MIR SINE MIR -12 250 105 654 91 344 84 chr15 70958039 70958193 -14737561 - MER46A DNA MER2_type -35 201 8 219 236 0 67 chr15 70959031 70959120 -14736634 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 307 296 45 67 chr15 70959400 70959579 -14736175 - MIR3 SINE MIR -14 194 20 1710 167 0 0 chr15 70959607 70959894 -14735860 + AluJo SINE Alu 1 287 -25 1112 228 8 0 chr15 70960037 70960278 -14735476 + L1MB4 LINE L1 5938 6180 0 2034 101 27 0 chr15 70960615 70960911 -14734843 - AluSx SINE Alu -8 304 1 1017 126 6 12 chr15 70960912 70961079 -14734675 - L1MA6 LINE L1 -349 5951 5786 462 187 88 2 chr15 70961078 70961194 -14734560 + L1MA6 LINE L1 6165 6290 -10 * 1863 112 77 0 chr15 70961663 70961950 -14733804 + AluSg SINE Alu 2 310 0 204 97 0 0 chr15 70962343 70962374 -14733380 + (TCC)n Simple_repeat Simple_repeat 2 32 0 391 306 67 0 chr15 70962554 70962688 -14733066 + MIR3 SINE MIR 41 183 -25 710 230 79 102 chr15 70963508 70963899 -14731855 - MLT1C LTR MaLR -8 459 1 660 184 40 20 chr15 70963986 70964138 -14731616 - MIR SINE MIR 0 262 108 344 298 180 50 chr15 70964324 70964707 -14731047 - L2 LINE L2 -34 3238 2806 225 65 0 0 chr15 70964982 70965013 -14730741 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4730 55 0 3 chr15 70965022 70965603 -14730151 - L1PA5 LINE L1 0 6154 5576 6064 41 0 24 chr15 70965604 70966412 -14729342 + L1P LINE L1 4634 5422 -732 529 258 139 39 chr15 70966488 70966798 -14728956 - L1ME LINE L1 -370 5751 5411 213 64 0 64 chr15 70966801 70966848 -14728906 + (TCC)n Simple_repeat Simple_repeat 3 46 0 297 51 0 68 chr15 70966865 70966924 -14728830 + (TCC)n Simple_repeat Simple_repeat 3 57 0 239 297 27 9 chr15 70966939 70967050 -14728704 + CT-rich Low_complexity Low_complexity 1 113 0 596 317 69 72 chr15 70967204 70967939 -14727815 - L2 LINE L2 0 3272 2546 220 211 140 0 chr15 70968046 70968103 -14727651 + L2 LINE L2 3150 3214 -58 834 190 0 40 chr15 70968535 70968709 -14727045 - AluJb SINE Alu -9 303 137 238 322 66 7 chr15 70968735 70968879 -14726875 - MIR SINE MIR -65 143 30 345 24 0 0 chr15 70969038 70969080 -14726674 + (GGGTG)n Simple_repeat Simple_repeat 1 42 0 754 188 0 121 chr15 70969290 70969497 -14726257 - AluJb SINE Alu -2 310 129 3274 149 9 9 chr15 70969948 70970497 -14725257 - L1MB3 LINE L1 -2 6181 5633 618 140 9 19 chr15 70970588 70970695 -14725059 + MSTA LTR MaLR 1 106 -322 1663 172 45 10 chr15 70970816 70971124 -14724630 + MSTA LTR MaLR 110 428 0 306 327 53 62 chr15 70971240 70971466 -14724288 + L2 LINE L2 3006 3229 -43 2068 121 0 3 chr15 70971504 70971809 -14723945 + AluSx SINE Alu 1 304 -8 317 297 112 60 chr15 70971834 70972083 -14723671 - HAL1 LINE L1 -17 2490 2229 352 293 83 8 chr15 70972097 70972230 -14723524 + MLT1H LTR MaLR 20 162 -387 2055 131 0 25 chr15 70972271 70972591 -14723163 + AluSx SINE Alu 1 312 0 395 202 8 3 chr15 70972768 70972857 -14722897 + MLT1H LTR MaLR 480 549 0 390 289 130 29 chr15 70973896 70974104 -14721650 + MIR SINE MIR 20 248 -14 999 120 23 0 chr15 70975359 70975534 -14720220 + CT-rich Low_complexity Low_complexity 1 179 0 393 206 0 0 chr15 70975547 70975639 -14720115 + CT-rich Low_complexity Low_complexity 5 96 0 783 132 37 29 chr15 70975643 70975779 -14719975 - AluSg/x SINE Alu -12 300 164 1788 143 4 4 chr15 70975898 70976222 -14719532 + AluJb SINE Alu 4 327 0 241 258 39 9 chr15 70976715 70976882 -14718872 - MLT1J2 LTR MaLR 0 450 247 310 304 24 16 chr15 70977448 70977573 -14718181 + L1ME LINE L1 5506 5631 -535 213 182 0 0 chr15 70978404 70978416 -14717338 + (TG)n Simple_repeat Simple_repeat 1 12 -32 6268 51 1 8 chr15 70978416 70979194 -14716560 + L1PA5 LINE L1 5382 6154 0 213 182 0 0 chr15 70979194 70979225 -14716529 + (TG)n Simple_repeat Simple_repeat 11 44 0 982 190 5 57 chr15 70979236 70979447 -14716307 + MER20 DNA MER1_type 1 200 -19 438 245 175 23 chr15 70979844 70980061 -14715693 + MIR SINE MIR 3 262 0 233 247 0 81 chr15 70980085 70980259 -14715495 + A-rich Low_complexity Low_complexity 6 165 0 * 245 247 19 37 chr15 70980171 70980333 -14715421 + (TAA)n Simple_repeat Simple_repeat 3 161 0 308 263 6 96 chr15 70980919 70981075 -14714679 + MIR SINE MIR 63 204 -58 24 32 0 0 chr15 70981075 70981106 -14714648 + AT_rich Low_complexity Low_complexity 1 31 0 2031 133 0 19 chr15 70981338 70981655 -14714099 + AluSx SINE Alu 1 311 -1 623 185 0 0 chr15 70981696 70981804 -14713950 - FLAM_A SINE Alu -11 131 24 964 248 17 38 chr15 70982264 70982554 -14713200 + L2 LINE L2 2111 2394 -920 591 303 27 81 chr15 70982578 70982948 -14712806 + MER21B LTR ERV1 26 375 -488 190 77 0 0 chr15 70982954 70982980 -14712774 - MER5B DNA MER1_type -149 29 4 676 294 128 27 chr15 70982982 70983356 -14712398 + L2 LINE L2 2902 3313 0 541 125 0 0 chr15 70983484 70983564 -14712190 + MADE1 DNA Mariner 1 80 0 243 125 0 0 chr15 70983564 70983604 -14712150 + (CATA)n Simple_repeat Simple_repeat 3 42 0 294 260 144 0 chr15 70983947 70984051 -14711703 + L2 LINE L2 3123 3241 -31 201 257 238 30 chr15 70984122 70984223 -14711531 + MIR SINE MIR 51 172 -90 224 279 16 0 chr15 70985169 70985230 -14710524 + L2 LINE L2 3199 3260 -12 395 270 216 34 chr15 70985324 70985528 -14710226 - MIR SINE MIR -9 253 13 1750 158 20 0 chr15 70985742 70986046 -14709708 - AluSx SINE Alu -2 310 1 401 145 114 69 chr15 70986421 70986552 -14709202 + AluJo SINE Alu 3 139 -173 847 200 7 0 chr15 70986612 70986757 -14708997 - FRAM SINE Alu -20 156 11 1841 123 4 0 chr15 70987021 70987298 -14708456 - AluSx SINE Alu -34 278 1 2149 98 3 3 chr15 70987366 70987663 -14708091 - AluSx SINE Alu -15 297 1 2012 114 3 0 chr15 70987951 70988250 -14707504 - AluY SINE Alu -5 306 7 1281 123 15 0 chr15 70988710 70988913 -14706841 - AluSg/x SINE Alu -14 296 91 875 116 29 0 chr15 70989299 70989437 -14706317 + FLAM_C SINE Alu 1 142 -1 21 0 0 0 chr15 70989592 70989613 -14706141 + GC_rich Low_complexity Low_complexity 1 21 0 351 311 115 71 chr15 70990695 70990991 -14704763 - L1ME4a LINE L1 -192 5929 5621 2124 100 0 19 chr15 70991309 70991618 -14704136 - AluSx SINE Alu -9 303 1 1510 134 0 0 chr15 70992017 70992240 -14703514 + AluJb SINE Alu 87 309 -3 2036 131 3 0 chr15 70992457 70992762 -14702992 - AluSx SINE Alu -6 306 1 279 302 160 52 chr15 70992856 70993237 -14702517 - L2 LINE L2 -649 2665 2244 1484 145 0 0 chr15 70993485 70993720 -14702034 - AluJo SINE Alu -77 235 1 388 315 0 0 chr15 70993935 70994046 -14701708 - MIR3 SINE MIR -8 200 90 2192 107 0 0 chr15 70994817 70995117 -14700637 - AluSq SINE Alu -13 300 1 2037 108 0 54 chr15 70995596 70995912 -14699842 + AluSx SINE Alu 1 299 -13 267 270 16 0 chr15 70996380 70996443 -14699311 + L2 LINE L2 3209 3272 0 2309 84 20 0 chr15 70996532 70996831 -14698923 + AluSx SINE Alu 1 305 -7 510 185 199 0 chr15 70997235 70997381 -14698373 + MIR SINE MIR 72 246 -16 2067 117 3 19 chr15 70997841 70998158 -14697596 + AluSx SINE Alu 1 312 0 2048 142 3 0 chr15 70999159 70999469 -14696285 + AluSx SINE Alu 1 311 -1 1178 124 0 6 chr15 70999568 70999746 -14696008 + AluSg/x SINE Alu 130 306 -6 482 297 62 0 chr15 71003271 71003399 -14692355 - L2 LINE L2 -11 3261 3126 2032 127 0 0 chr15 71003483 71003782 -14691972 - AluSq SINE Alu -14 299 1 660 319 74 38 chr15 71003787 71004232 -14691522 - L2 LINE L2 0 3313 2853 322 204 23 0 chr15 71004457 71004545 -14691209 + CT-rich Low_complexity Low_complexity 4 93 0 2144 76 4 0 chr15 71004547 71004823 -14690931 - AluSq SINE Alu -36 277 1 192 213 0 64 chr15 71005277 71005324 -14690430 + L2 LINE L2 1387 1430 -1884 281 309 118 35 chr15 71005482 71005536 -14690218 - L2 LINE L2 -1067 2247 2199 1896 138 3 3 chr15 71005536 71005833 -14689921 + AluJo SINE Alu 1 297 -15 281 309 118 35 chr15 71005833 71006144 -14689610 - L2 LINE L2 -1115 2199 1852 272 302 23 47 chr15 71006469 71006598 -14689156 - MIR SINE MIR -2 260 135 1764 159 0 3 chr15 71006923 71007254 -14688500 + AluSx SINE Alu 1 330 0 550 263 39 39 chr15 71007615 71007771 -14687983 - MIR SINE MIR -94 168 13 244 243 262 10 chr15 71008057 71008160 -14687594 + MIR3 SINE MIR 51 179 -29 1771 160 101 25 chr15 71008567 71008935 -14686819 + MSTD LTR MaLR 1 396 0 2330 81 3 3 chr15 71009155 71009463 -14686291 + AluSq SINE Alu 2 309 -4 283 67 0 0 chr15 71009977 71010022 -14685732 + L1MA7 LINE L1 6246 6290 -1 786 206 0 0 chr15 71010023 71010149 -14685605 + FLAM_C SINE Alu 2 127 -16 1013 151 28 145 chr15 71010158 71010271 -14685483 + AluYb8 SINE Alu 23 148 -170 2241 101 0 0 chr15 71010271 71010577 -14685177 + AluSq SINE Alu 1 306 -7 1013 151 28 145 chr15 71010577 71010615 -14685139 + AluYb8 SINE Alu 148 189 -129 1679 131 78 0 chr15 71010615 71010897 -14684857 + AluSx SINE Alu 1 304 -8 1013 151 28 145 chr15 71010897 71011061 -14684693 + AluYb8 SINE Alu 189 302 -16 29 60 0 0 chr15 71011061 71011111 -14684643 + AT_rich Low_complexity Low_complexity 1 50 0 2213 100 0 3 chr15 71011591 71011902 -14683852 - AluSx SINE Alu -2 310 1 1073 183 6 147 chr15 71012459 71012586 -14683168 + AluYb8 SINE Alu 1 144 -174 504 0 0 0 chr15 71012586 71012642 -14683112 + (TA)n Simple_repeat Simple_repeat 2 57 0 1073 183 6 147 chr15 71012642 71012875 -14682879 + AluYb8 SINE Alu 144 310 -8 1147 180 15 0 chr15 71013806 71014006 -14681748 + MER20 DNA MER1_type 16 218 -1 2247 97 0 0 chr15 71014022 71014331 -14681423 - AluSg1 SINE Alu 0 309 1 2028 124 16 10 chr15 71014333 71014639 -14681115 - AluSx SINE Alu -4 308 1 2265 84 3 3 chr15 71015028 71015324 -14680430 - AluSp SINE Alu -17 296 1 252 268 78 7 chr15 71015337 71015479 -14680275 + L1ME4a LINE L1 5970 6121 0 2037 112 0 0 chr15 71015818 71016133 -14679621 + AluSx SINE Alu 1 315 0 476 287 44 22 chr15 71016334 71016470 -14679284 - L2 LINE L2 0 3272 3134 365 364 114 0 chr15 71016515 71016743 -14679011 + L2 LINE L2 2412 2665 -649 913 148 12 0 chr15 71017923 71018085 -14677669 + AluJb SINE Alu 146 309 -3 916 202 124 57 chr15 71018169 71018504 -14677250 + L1MC5 LINE L1 7260 7636 -325 1746 103 42 58 chr15 71018504 71018814 -14676940 - AluSx SINE Alu -7 305 1 916 202 124 57 chr15 71018814 71018938 -14676816 + L1MC5 LINE L1 7636 7750 -211 1112 184 79 26 chr15 71018940 71019207 -14676547 + AluJo SINE Alu 1 281 -31 414 86 0 57 chr15 71019208 71019278 -14676476 - Alu SINE Alu -5 307 242 2071 113 7 0 chr15 71019292 71019583 -14676171 - AluSp SINE Alu -20 293 1 22 35 0 0 chr15 71019594 71019623 -14676131 + AT_rich Low_complexity Low_complexity 1 29 0 2147 81 13 29 chr15 71019813 71020122 -14675632 + AluSx SINE Alu 1 304 -8 1380 271 125 20 chr15 71020309 71021076 -14674678 + L2 LINE L2 2447 3298 -15 22 35 0 0 chr15 71021084 71021113 -14674641 + AT_rich Low_complexity Low_complexity 1 29 0 197 267 0 0 chr15 71021213 71021258 -14674496 + L2 LINE L2 3216 3260 -12 307 296 66 21 chr15 71022165 71022540 -14673214 + L1ME4a LINE L1 5561 6106 -15 411 266 83 62 chr15 71022546 71022738 -14673016 - L2 LINE L2 -1 3312 3117 240 221 103 103 chr15 71022831 71022967 -14672787 + MER58C DNA MER1_type 79 214 -1 241 282 56 0 chr15 71022968 71023039 -14672715 - L2 LINE L2 -209 3063 2989 400 322 88 31 chr15 71023337 71023564 -14672190 - MIR SINE MIR -3 259 20 423 56 0 0 chr15 71023686 71023740 -14672014 + (TCC)n Simple_repeat Simple_repeat 3 56 0 438 321 22 38 chr15 71024132 71024316 -14671438 + MIR3 SINE MIR 3 183 -25 750 200 136 3 chr15 71024331 71024861 -14670893 - LTR50 LTR ERVL -3 792 1 333 165 12 35 chr15 71024939 71025024 -14670730 - L1MA4 LINE L1 -3 6297 6215 2261 49 28 0 chr15 71025028 71025313 -14670441 + AluY SINE Alu 17 309 -2 268 288 88 40 chr15 71025443 71025568 -14670186 - MIR3 SINE MIR -6 202 72 708 188 134 5 chr15 71025643 71025805 -14669949 + MER5A DNA MER1_type 4 189 0 288 213 0 0 chr15 71025969 71026073 -14669681 + (CA)n Simple_repeat Simple_repeat 1 104 0 253 298 224 39 chr15 71026078 71026283 -14669471 + L2 LINE L2 2808 3050 -222 9210 159 47 5 chr15 71026545 71028260 -14667494 + L1 LINE L1 3198 4985 -1161 261 222 0 0 chr15 71029683 71029746 -14666008 + CT-rich Low_complexity Low_complexity 4 66 0 277 301 7 84 chr15 71029832 71029975 -14665779 - MIR3 SINE MIR -62 146 15 900 262 147 31 chr15 71030440 71030859 -14664895 - MLT1J2 LTR MaLR 0 446 1 2074 134 0 0 chr15 71031196 71031501 -14664253 - AluSx SINE Alu -7 305 1 301 292 8 77 chr15 71031589 71031719 -14664035 + MIR3 SINE MIR 81 201 -7 428 187 86 65 chr15 71031891 71032030 -14663724 - MLT1K LTR MaLR -341 247 106 208 121 0 0 chr15 71032107 71032140 -14663614 + (CA)n Simple_repeat Simple_repeat 1 33 0 2193 79 3 0 chr15 71032302 71032592 -14663162 + L1PB1 LINE L1 5860 6150 -1 356 235 70 75 chr15 71034017 71034204 -14661550 + MARNA DNA Mariner 171 356 -230 273 255 106 11 chr15 71034368 71034462 -14661292 + MARNA DNA Mariner 343 445 -141 195 280 20 0 chr15 71034572 71034622 -14661132 + MER5A DNA MER1_type 1 51 -138 442 309 94 17 chr15 71034627 71034808 -14660946 + MER115 DNA AcHobo 3 197 -496 456 287 96 6 chr15 71034938 71035105 -14660649 + MER115 DNA AcHobo 512 693 0 414 312 72 7 chr15 71035173 71035311 -14660443 + MER5A DNA MER1_type 40 186 -3 200 351 73 33 chr15 71035176 71035327 -14660427 - MER5A DNA MER1_type -31 158 2 * 904 190 0 44 chr15 71035855 71036099 -14659655 + AluJo SINE Alu 87 321 0 1918 207 30 26 chr15 71036474 71036937 -14658817 - MLT1C LTR MaLR -2 465 1 370 105 0 3 chr15 71037575 71037630 -14658124 + AluSx SINE Alu 2 47 -256 2499 99 8 8 chr15 71037630 71037985 -14657769 - THE1A LTR MaLR 0 355 1 1649 139 0 8 chr15 71037985 71038251 -14657503 + AluSx SINE Alu 43 306 -6 734 254 24 70 chr15 71038390 71038728 -14657026 - L1MC/D LINE L1 -396 5725 5458 646 249 108 60 chr15 71039044 71039293 -14656461 + MIR SINE MIR 2 262 0 1655 101 16 8 chr15 71039424 71039672 -14656082 - L1PA14 LINE L1 -2 6159 5910 375 252 0 0 chr15 71040024 71040269 -14655485 + (CA)n Simple_repeat Simple_repeat 1 245 0 285 250 0 0 chr15 71040291 71040463 -14655291 + (CA)n Simple_repeat Simple_repeat 1 172 0 402 220 0 0 chr15 71040488 71040665 -14655089 + (CA)n Simple_repeat Simple_repeat 2 178 0 271 221 23 35 chr15 71040767 71040853 -14654901 + CT-rich Low_complexity Low_complexity 2 86 0 1830 214 63 0 chr15 71041249 71041627 -14654127 - MER93a LTR ERV1 0 402 1 2164 100 0 6 chr15 71042825 71043136 -14652618 + AluSc SINE Alu 1 309 0 230 256 106 21 chr15 71043763 71043872 -14651882 + MIR SINE MIR 14 130 -78 285 188 43 0 chr15 71044700 71044769 -14650985 - MLT1L LTR MaLR 0 615 544 1935 138 3 0 chr15 71044770 71045067 -14650687 - AluSx SINE Alu -14 298 1 421 279 74 13 chr15 71045067 71045296 -14650458 - L1M4 LINE L1 -2079 4067 3825 630 303 77 9 chr15 71047257 71047478 -14648276 - MIR SINE MIR -15 247 12 2251 105 7 0 chr15 71049793 71050097 -14645657 - AluSx SINE Alu -6 306 1 209 316 71 10 chr15 71050222 71050320 -14645434 + MIR SINE MIR 48 134 -74 22 0 0 0 chr15 71050929 71050951 -14644803 + AT_rich Low_complexity Low_complexity 1 22 0 515 250 223 14 chr15 71051040 71051260 -14644494 - L1ME LINE L1 -368 6589 6324 2809 261 69 50 chr15 71051781 71052507 -14643247 - L1MCc LINE L1 -3679 3262 2552 1993 157 0 3 chr15 71052507 71052807 -14642947 + AluSx SINE Alu 1 299 -13 2809 261 69 50 chr15 71052807 71053756 -14641998 - L1MCc LINE L1 -4389 2552 1371 1803 122 4 4 chr15 71053756 71054057 -14641697 - AluSp SINE Alu 0 339 39 2809 261 69 50 chr15 71054057 71054283 -14641471 - L1MCc LINE L1 -5570 1371 1151 1763 202 95 10 chr15 71054303 71054714 -14641040 - L1ME1 LINE L1 -2 6164 5719 2585 14 24 7 chr15 71055385 71055676 -14640078 + AluYb8 SINE Alu 17 312 -6 260 293 47 28 chr15 71056005 71056111 -14639643 + L2 LINE L2 2924 3031 -241 244 382 0 18 chr15 71056996 71057106 -14638648 - MER5A DNA MER1_type -63 126 19 263 359 147 12 chr15 71057299 71057469 -14638285 + L2 LINE L2 3080 3272 0 1039 263 129 14 chr15 71057898 71058263 -14637491 - L1MC4a LINE L1 -1902 5906 5500 269 363 0 38 chr15 71058965 71059096 -14636658 + MIR SINE MIR 43 167 -65 386 303 15 70 chr15 71059502 71059674 -14636080 - MIR SINE MIR -62 146 4 206 292 31 42 chr15 71059985 71060081 -14635673 - MIR3 SINE MIR -9 199 105 1776 156 0 57 chr15 71060413 71060727 -14635027 - AluJb SINE Alu -16 296 1 452 301 126 10 chr15 71061609 71061815 -14633939 + MIR SINE MIR 29 258 -4 191 323 108 0 chr15 71062327 71062420 -14633334 + L2 LINE L2 3161 3263 -9 204 253 192 40 chr15 71062518 71062617 -14633137 + MIR SINE MIR 31 144 -64 365 340 7 21 chr15 71063401 71063542 -14632212 - L2 LINE L2 0 3272 3134 673 218 24 35 chr15 71063637 71063807 -14631947 - MIR SINE MIR -64 198 31 529 278 76 26 chr15 71064692 71064951 -14630803 - LTR33 LTR ERVL -22 501 227 497 152 63 85 chr15 71065204 71065238 -14630516 - L1MA9 LINE L1 -341 5963 5930 1524 121 17 0 chr15 71065238 71065470 -14630284 - L1MA7 LINE L1 0 6291 6056 497 152 63 85 chr15 71065470 71065581 -14630173 - L1MA9 LINE L1 -374 5930 5814 293 68 23 0 chr15 71065589 71065633 -14630121 + (TC)n Simple_repeat Simple_repeat 1 45 0 1930 137 7 0 chr15 71065646 71065931 -14629823 - AluSx SINE Alu -5 307 21 1026 161 17 0 chr15 71065931 71066105 -14629649 - L1MA9 LINE L1 -459 5832 5656 248 177 0 97 chr15 71066137 71066199 -14629555 + MIR SINE MIR 195 250 -12 1238 201 4 16 chr15 71067739 71067993 -14627761 + AluJo SINE Alu 38 288 -24 265 157 59 20 chr15 71067993 71068095 -14627659 + (TA)n Simple_repeat Simple_repeat 1 106 0 687 248 70 40 chr15 71068545 71068900 -14626854 - MLT1J LTR MaLR -6 505 101 467 196 81 34 chr15 71069088 71069236 -14626518 + L1ME4a LINE L1 5967 6121 0 215 333 111 11 chr15 71072459 71072549 -14623205 - MIR3 SINE MIR -25 183 85 466 228 10 10 chr15 71072748 71072849 -14622905 - L2 LINE L2 0 3272 3172 279 243 15 110 chr15 71073265 71073401 -14622353 - MLT1J LTR MaLR -9 502 380 296 289 15 89 chr15 71074108 71074243 -14621511 - MLT1J LTR MaLR -153 358 234 751 240 5 46 chr15 71074394 71074590 -14621164 - MER5A DNA MER1_type -1 188 1 549 141 1 155 chr15 71075946 71076149 -14619605 + L1MA8 LINE L1 6115 6290 -1 2290 120 0 0 chr15 71076617 71076918 -14618836 - AluSx SINE Alu -11 301 1 427 301 61 15 chr15 71078483 71078651 -14617103 - MIR SINE MIR -5 257 77 1284 191 4 25 chr15 71078651 71078892 -14616862 - MER46A DNA MER2_type 0 236 1 427 301 61 15 chr15 71078892 71078919 -14616835 - MIR SINE MIR -185 77 53 191 286 24 0 chr15 71079109 71079151 -14616603 + L2 LINE L2 3252 3294 -19 2057 118 0 70 chr15 71079496 71079826 -14615928 + AluSx SINE Alu 1 307 -5 802 204 6 6 chr15 71081189 71081539 -14614215 + GA-rich Low_complexity Low_complexity 1 350 0 243 190 10 50 chr15 71081562 71081662 -14614092 + GA-rich Low_complexity Low_complexity 1 96 0 315 295 121 46 chr15 71083453 71083758 -14611996 + LTR16C LTR ERVL 159 486 -5 256 403 15 15 chr15 71084014 71084215 -14611539 - L3 LINE CR1 -354 1223 1023 234 0 0 0 chr15 71084682 71084708 -14611046 + (TG)n Simple_repeat Simple_repeat 1 26 0 869 209 15 20 chr15 71085547 71085589 -14610165 - L1MB5 LINE L1 -11 6163 6122 1854 185 65 3 chr15 71085589 71085929 -14609825 - MER46B DNA MER2_type 0 236 1 869 209 15 20 chr15 71085929 71086082 -14609672 - L1MB5 LINE L1 -52 6122 5969 829 216 64 125 chr15 71086082 71086521 -14609233 - L1ME3A LINE L1 -5 6165 5754 1142 219 39 18 chr15 71086570 71086849 -14608905 + LTR16A LTR ERVL 118 402 -48 964 246 64 49 chr15 71086875 71087178 -14608576 - L1ME3A LINE L1 -420 5750 5440 1776 163 20 3 chr15 71087178 71087478 -14608276 - AluSx SINE Alu -7 305 1 964 246 64 49 chr15 71087478 71087503 -14608251 - L1ME3A LINE L1 -730 5440 5417 1778 128 91 14 chr15 71087563 71087859 -14607895 - L1MC1 LINE L1 -2 6331 6013 33 43 0 0 chr15 71087934 71087981 -14607773 + AT_rich Low_complexity Low_complexity 1 47 0 2510 70 0 0 chr15 71088189 71088491 -14607263 + AluY SINE Alu 1 302 -9 185 333 154 8 chr15 71088677 71088794 -14606960 + MIR3 SINE MIR 60 193 -15 5054 222 96 56 chr15 71088828 71090673 -14605081 + L1M4b LINE L1 3 1902 -4948 2493 78 3 0 chr15 71090673 71090982 -14604772 + AluY SINE Alu 1 310 -1 232 273 0 0 chr15 71091211 71091266 -14604488 - L1MB5 LINE L1 -525 5808 5754 245 274 121 40 chr15 71091852 71091976 -14603778 - MLT1I LTR MaLR -197 212 79 805 250 65 5 chr15 71093498 71093714 -14602040 + MIR SINE MIR 6 234 -28 2329 97 0 3 chr15 71093842 71094140 -14601614 + AluSp SINE Alu 1 297 -16 369 62 0 0 chr15 71094320 71094368 -14601386 + (TG)n Simple_repeat Simple_repeat 2 49 0 186 305 17 0 chr15 71094559 71094618 -14601136 - MIR SINE MIR -13 249 190 344 248 215 42 chr15 71094632 71094846 -14600908 - MIR SINE MIR -2 260 10 284 304 50 13 chr15 71095324 71095432 -14600322 - MIR SINE MIR -68 140 58 213 65 0 0 chr15 71096882 71096913 -14598841 + (T)n Simple_repeat Simple_repeat 1 31 0 187 325 112 25 chr15 71097780 71097977 -14597777 - MIR SINE MIR 0 262 49 467 217 9 17 chr15 71098620 71098735 -14597019 - MIR3 SINE MIR -12 196 83 340 214 86 29 chr15 71099283 71099423 -14596331 - L1ME4a LINE L1 -10 6111 5964 228 221 162 0 chr15 71099538 71099606 -14596148 - L1ME3A LINE L1 -104 6066 5988 21 57 0 0 chr15 71099617 71099652 -14596102 + AT_rich Low_complexity Low_complexity 1 35 0 333 47 0 0 chr15 71099695 71099738 -14596016 + (CA)n Simple_repeat Simple_repeat 1 43 0 4220 180 14 27 chr15 71099739 71100578 -14595176 - L1MC3 LINE L1 -92 7693 6866 13342 147 19 85 chr15 71100613 71102829 -14592925 - L1MA3 LINE L1 0 7724 5363 1748 131 0 14 chr15 71102829 71103104 -14592650 - L1PA13 LINE L1 -6 6157 5887 13342 147 19 85 chr15 71103104 71107065 -14588689 - L1MA3 LINE L1 -2361 5363 16 2498 172 43 35 chr15 71107072 71107560 -14588194 - L1MC3 LINE L1 -921 6864 6373 201 175 0 0 chr15 71107750 71107790 -14587964 + (TATG)n Simple_repeat Simple_repeat 4 43 0 491 283 47 19 chr15 71107806 71108018 -14587736 - L1MEc LINE L1 -4579 2246 2029 234 259 133 21 chr15 71108180 71108323 -14587431 - L1MEc LINE L1 -4852 1690 1532 271 245 101 37 chr15 71108337 71108525 -14587229 - L1MEc LINE L1 -5053 1581 1382 600 331 85 30 chr15 71109586 71109951 -14585803 + L1ME3A LINE L1 5527 5911 -259 373 244 168 0 chr15 71109967 71110098 -14585656 - MLT1H LTR MaLR -15 534 382 1986 183 5 81 chr15 71110435 71110855 -14584899 + MLT1B LTR MaLR 3 390 0 2265 104 0 7 chr15 71110884 71111183 -14584571 + AluSg SINE Alu 1 297 -13 349 305 75 14 chr15 71111539 71111702 -14584052 - MIR SINE MIR -61 147 26 434 182 0 13 chr15 71112149 71112226 -14583528 - MER63 DNA MER1_type -314 746 671 388 330 66 14 chr15 71112322 71112534 -14583220 + MIR SINE MIR 34 256 -6 283 248 178 23 chr15 71112596 71112725 -14583029 - MIR SINE MIR -3 259 111 340 207 14 28 chr15 71113482 71113627 -14582127 + CT-rich Low_complexity Low_complexity 3 145 0 502 303 122 9 chr15 71114365 71114586 -14581168 + MIR SINE MIR 17 262 0 53 14 0 14 chr15 71114586 71114637 -14581117 + AT_rich Low_complexity Low_complexity 1 52 -18 1992 130 0 53 chr15 71114637 71114959 -14580795 - AluSx SINE Alu -7 305 1 53 14 0 14 chr15 71114959 71114978 -14580776 + AT_rich Low_complexity Low_complexity 52 70 0 185 283 65 0 chr15 71114993 71115039 -14580715 + L2 LINE L2 3008 3056 -257 443 332 142 40 chr15 71115297 71115523 -14580231 - L2 LINE L2 -4 3268 3020 567 289 52 21 chr15 71115566 71115919 -14579835 - LTR16C LTR ERVL -8 483 89 2135 114 3 7 chr15 71116622 71116921 -14578833 - AluSx SINE Alu -14 298 1 508 345 15 15 chr15 71117005 71117202 -14578552 + MIR SINE MIR 14 210 -52 2142 126 0 7 chr15 71117504 71117805 -14577949 + AluSx SINE Alu 1 299 -13 558 294 91 40 chr15 71117850 71118336 -14577418 + L1ME3 LINE L1 5317 5829 -333 333 301 14 27 chr15 71118405 71118553 -14577201 + L1ME LINE L1 5666 5811 -351 23 0 0 0 chr15 71118901 71118924 -14576830 + AT_rich Low_complexity Low_complexity 1 23 0 1382 93 0 0 chr15 71119488 71119660 -14576094 - AluSg/x SINE Alu -19 293 122 618 85 0 0 chr15 71119900 71119982 -14575772 + L1MA1 LINE L1 6220 6301 -1 1402 67 4 5 chr15 71120279 71120467 -14575287 - L1PA4 LINE L1 -250 5918 5733 448 39 0 0 chr15 71120467 71120517 -14575237 + L1PA3 LINE L1 6101 6152 -3 203 229 0 21 chr15 71121551 71121599 -14574155 + MIR SINE MIR 47 93 -169 239 266 76 13 chr15 71121655 71121734 -14574020 - MIR SINE MIR -92 170 87 7223 63 3 0 chr15 71121756 71122821 -14572933 - L1PA5 LINE L1 0 6154 5076 208 205 0 0 chr15 71124237 71124276 -14571478 + MIR SINE MIR 47 85 -177 570 296 39 10 chr15 71124353 71124532 -14571222 + MER5A DNA MER1_type 4 188 -1 450 259 111 7 chr15 71124602 71124737 -14571017 - MIR SINE MIR -105 157 9 1107 160 33 128 chr15 71125887 71126193 -14569561 - MLT1F LTR MaLR 0 542 266 1173 205 42 82 chr15 71126223 71126701 -14569053 + L1MC5 LINE L1 7471 7929 -32 374 299 47 24 chr15 71126941 71127068 -14568686 + L1MEd LINE L1 561 690 -5429 440 254 14 78 chr15 71127074 71127216 -14568538 + MER94 DNA DNA 1 133 -1 958 149 174 0 chr15 71127326 71127487 -14568267 + MER5A DNA MER1_type 1 189 0 271 311 16 45 chr15 71128449 71128610 -14567144 - MER5A DNA MER1_type -16 162 1 654 297 15 15 chr15 71128834 71129036 -14566718 + MIR SINE MIR 61 262 0 383 315 107 0 chr15 71129971 71130120 -14565634 - MIR SINE MIR -78 184 20 213 263 21 42 chr15 71130456 71130551 -14565203 + L3 LINE CR1 1431 1523 -54 352 286 84 39 chr15 71130561 71130715 -14565039 - MER5B DNA MER1_type -17 161 1 3819 116 2 0 chr15 71130732 71131243 -14564511 + MER75 DNA T2_type 1 512 -2 6761 89 64 4 chr15 71132324 71134038 -14561716 - L1PA13 LINE L1 -1 6162 4396 369 265 59 10 chr15 71134168 71134270 -14561484 + MIR SINE MIR 37 143 -119 229 284 222 0 chr15 71134358 71134439 -14561315 + L2 LINE L2 3122 3220 -52 2536 87 0 0 chr15 71135312 71135622 -14560132 - AluSg SINE Alu 0 310 1 522 207 74 0 chr15 71135813 71135934 -14559820 - LTR16C LTR ERVL -2 489 360 1290 188 53 142 chr15 71135935 71136366 -14559388 - MLT2B1 LTR ERVL -1 413 21 451 213 118 37 chr15 71136473 71136609 -14559145 - LTR16C LTR ERVL -274 217 71 243 227 183 22 chr15 71136993 71137125 -14558629 - MIR SINE MIR -65 197 48 263 180 0 16 chr15 71137315 71137350 -14558404 + CT-rich Low_complexity Low_complexity 2 37 -24 2070 103 13 13 chr15 71137350 71137650 -14558104 - AluSx SINE Alu -12 300 1 263 180 0 16 chr15 71137650 71137675 -14558079 + CT-rich Low_complexity Low_complexity 37 61 0 3299 187 80 0 chr15 71138780 71139395 -14556359 - LTR65 LTR ERV1 -5 664 1 350 213 0 12 chr15 71139445 71139525 -14556229 - LTR30 LTR ERV1 -98 624 546 422 289 33 14 chr15 71139754 71139965 -14555789 + MER113 DNA MER1_type? 7 221 -300 915 187 103 126 chr15 71140196 71140634 -14555120 - MLT1A1 LTR MaLR 0 428 1 506 324 16 0 chr15 71140746 71140928 -14554826 + MIR SINE MIR 46 230 -32 197 101 51 72 chr15 71141414 71141552 -14554202 + (TTATA)n Simple_repeat Simple_repeat 1 135 0 219 260 137 0 chr15 71141628 71141701 -14554053 - L2 LINE L2 -2 3311 3229 881 200 46 27 chr15 71141871 71142236 -14553518 + MLT1C LTR MaLR 32 436 -31 1022 205 31 35 chr15 71144866 71145125 -14550629 - MIR SINE MIR 0 262 5 216 292 44 18 chr15 71145309 71145422 -14550332 + MIR SINE MIR 22 137 -71 866 184 43 11 chr15 71145422 71145607 -14550147 + MSTB2 LTR MaLR 1 191 -266 277 133 0 0 chr15 71145616 71145661 -14550093 + MIR SINE MIR 64 108 -154 227 309 44 83 chr15 71145674 71145878 -14549876 - L2 LINE L2 -532 2782 2587 1056 129 0 0 chr15 71145984 71146154 -14549600 + (TCCCC)n Simple_repeat Simple_repeat 4 173 0 188 185 19 0 chr15 71146159 71146213 -14549541 + CT-rich Low_complexity Low_complexity 2 56 0 348 364 72 26 chr15 71146821 71147123 -14548631 + L1ME1 LINE L1 3826 4140 -2006 389 309 85 43 chr15 71147177 71147751 -14548003 + L1ME1 LINE L1 4156 4775 -1371 2086 145 3 0 chr15 71147751 71148055 -14547699 + AluSx SINE Alu 6 310 -2 389 309 85 43 chr15 71148055 71148293 -14547461 + L1ME1 LINE L1 4775 5002 -1144 1707 250 39 5 chr15 71148303 71148735 -14547019 + L1ME1 LINE L1 5715 6161 -5 989 222 31 27 chr15 71148925 71149182 -14546572 - MIR SINE MIR 0 262 5 302 369 53 25 chr15 71149491 71149846 -14545908 + L1MC/D LINE L1 5463 5827 -1981 1417 235 7 10 chr15 71149882 71150180 -14545574 - MLT1E2 LTR MaLR 0 626 330 7642 47 2 0 chr15 71150187 71151560 -14544194 - L1PA5 LINE L1 0 6154 4774 1776 59 0 0 chr15 71151560 71151780 -14543974 + L1PA5 LINE L1 4535 4754 -1392 1055 256 97 22 chr15 71151780 71152100 -14543654 - MLT1E2 LTR MaLR -280 344 1 1939 158 23 40 chr15 71152400 71152471 -14543283 - MER2 DNA MER2_type 0 344 273 2089 122 21 0 chr15 71152471 71152757 -14542997 + AluSq SINE Alu 1 292 -21 1939 158 23 40 chr15 71152757 71153034 -14542720 - MER2 DNA MER2_type -71 273 2 1382 207 114 3 chr15 71153172 71153515 -14542239 - L1MDb LINE L1 -4390 2150 1770 663 221 98 54 chr15 71153525 71153729 -14542025 - MER20 DNA MER1_type -6 213 1 36 0 0 0 chr15 71153762 71153798 -14541956 + AT_rich Low_complexity Low_complexity 1 36 0 1468 260 43 61 chr15 71153799 71154220 -14541534 - L1MDb LINE L1 -4828 1712 1285 2578 65 0 0 chr15 71154220 71154529 -14541225 - AluY SINE Alu -2 309 1 1468 260 43 61 chr15 71154529 71154738 -14541016 - L1MDb LINE L1 -5255 1285 1114 2143 196 99 11 chr15 71154738 71155202 -14540552 - MLT1D LTR MaLR 0 505 1 1468 260 43 61 chr15 71155202 71155404 -14540350 - L1MDb LINE L1 -5426 1114 910 378 0 0 0 chr15 71155718 71155760 -14539994 + (GA)n Simple_repeat Simple_repeat 1 42 0 791 327 9 28 chr15 71155975 71156296 -14539458 - L1MDb LINE L1 -6210 330 16 241 273 71 91 chr15 71156738 71156837 -14538917 + L2 LINE L2 3176 3272 0 604 251 85 60 chr15 71156997 71157280 -14538474 - L2 LINE L2 -36 3277 2988 2370 101 3 0 chr15 71157717 71158015 -14537739 - AluSx SINE Alu -13 299 1 289 270 96 52 chr15 71158086 71158201 -14537553 + L2 LINE L2 3153 3272 0 660 211 45 8 chr15 71158441 71158574 -14537180 - MIR SINE MIR -119 143 6 580 254 39 29 chr15 71158581 71158784 -14536970 + MIR SINE MIR 17 224 -38 520 209 79 7 chr15 71159407 71159546 -14536208 + L1ME1 LINE L1 6018 6166 0 256 215 89 0 chr15 71159787 71159866 -14535888 - L2 LINE L2 -30 3242 3157 729 240 67 48 chr15 71160066 71160306 -14535448 + MIR SINE MIR 16 262 0 433 293 70 39 chr15 71160367 71160833 -14534921 - L2 LINE L2 -117 3196 2728 208 243 100 14 chr15 71161680 71161750 -14534004 + MIR SINE MIR 47 122 -140 2232 115 0 0 chr15 71162678 71162982 -14532772 - AluY SINE Alu -7 304 1 210 71 0 0 chr15 71163127 71163155 -14532599 + (TA)n Simple_repeat Simple_repeat 2 29 0 40859 31 1 2 chr15 71163317 71168912 -14526842 - L1PA3 LINE L1 0 6155 566 218 256 23 12 chr15 71169310 71169396 -14526358 + (TA)n Simple_repeat Simple_repeat 2 88 0 247 280 0 54 chr15 71169725 71169818 -14525936 + L2 LINE L2 3226 3313 0 384 346 87 17 chr15 71170393 71170624 -14525130 - L2 LINE L2 -25 3247 3001 278 275 0 77 chr15 71171506 71171597 -14524157 + L2 LINE L2 3154 3237 -35 978 163 19 6 chr15 71172507 71172667 -14523087 - AluJb SINE Alu -18 294 133 330 309 36 9 chr15 71173159 71173269 -14522485 - MIR SINE MIR -64 198 86 446 292 37 8 chr15 71173808 71173981 -14521773 + MIR SINE MIR 2 178 -62 1502 129 21 9 chr15 71174072 71174305 -14521449 + L1PB4 LINE L1 5918 6153 -3 22 56 0 0 chr15 71175478 71175514 -14520240 + AT_rich Low_complexity Low_complexity 1 36 0 2309 74 0 7 chr15 71175712 71176023 -14519731 - AluY SINE Alu 0 309 1 1961 142 3 16 chr15 71176217 71176520 -14519234 - AluSq SINE Alu 0 313 15 381 246 104 93 chr15 71177006 71177115 -14518639 - L1P LINE L1 -1620 4526 4420 2323 74 0 0 chr15 71177115 71177425 -14518329 + AluY SINE Alu 1 310 0 381 246 104 93 chr15 71177425 71177531 -14518223 - L1P LINE L1 -1726 4420 4317 813 11 0 0 chr15 71177531 71177622 -14518132 - L1PA4 LINE L1 -3 6152 6062 381 246 104 93 chr15 71177622 71177911 -14517843 - L1P LINE L1 -1829 4317 4014 394 348 20 4 chr15 71178225 71178469 -14517285 - L1M4 LINE L1 -3587 2559 2312 1475 97 0 0 chr15 71178478 71178674 -14517080 - AluSq SINE Alu 0 313 118 1546 221 75 36 chr15 71178680 71179120 -14516634 + MER31B LTR ERV1 1 457 -9 263 257 16 104 chr15 71179692 71179875 -14515879 - HAL1 LINE L1 -851 1656 1490 272 306 27 18 chr15 71179878 71179989 -14515765 + MIR SINE MIR 97 208 -54 201 39 0 0 chr15 71180834 71180860 -14514894 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 210 37 0 0 chr15 71181422 71181449 -14514305 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 183 312 32 40 chr15 71181637 71181762 -14513992 + MIR3 SINE MIR 1 124 -84 772 183 7 13 chr15 71181802 71181955 -14513799 - L1ME LINE L1 -411 5751 5600 831 274 132 22 chr15 71182229 71182547 -14513207 + MLT1I LTR MaLR 57 409 0 1794 164 0 7 chr15 71182592 71182885 -14512869 - AluJb SINE Alu -21 291 1 496 261 106 44 chr15 71183034 71183260 -14512494 + MIR SINE MIR 2 241 -21 2258 104 16 0 chr15 71184641 71184949 -14510805 - AluSp SINE Alu 0 313 1 219 103 0 0 chr15 71184970 71185009 -14510745 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2115 116 0 3 chr15 71185177 71185478 -14510276 + AluSx SINE Alu 1 300 -12 429 54 0 0 chr15 71185876 71185932 -14509822 + (TG)n Simple_repeat Simple_repeat 2 57 0 25 65 0 0 chr15 71186392 71186438 -14509316 + AT_rich Low_complexity Low_complexity 1 46 0 708 171 0 100 chr15 71186447 71186587 -14509167 - FLAM_A SINE Alu -7 126 1 1701 179 19 7 chr15 71188052 71188359 -14507395 + AluJo SINE Alu 1 311 -1 221 227 64 82 chr15 71188495 71188605 -14507149 + L2 LINE L2 2937 3044 -228 848 302 4 4 chr15 71188718 71188950 -14506804 - MIR SINE MIR -22 240 9 1309 211 32 80 chr15 71189008 71189420 -14506334 + L2 LINE L2 2358 2749 -565 1180 248 61 32 chr15 71189417 71189796 -14505958 + L2 LINE L2 2923 3312 -1 * 503 191 184 7 chr15 71189893 71190029 -14505725 + MIR SINE MIR 76 235 -27 974 212 165 41 chr15 71190040 71190380 -14505374 - LTR16A LTR ERVL -10 440 59 188 313 84 0 chr15 71191107 71191190 -14504564 + MIR SINE MIR 16 105 -103 276 149 0 0 chr15 71191248 71191295 -14504459 + (TC)n Simple_repeat Simple_repeat 2 48 0 1081 161 138 47 chr15 71191296 71191687 -14504067 - MER101B LTR ERV1 -73 497 4 540 183 127 8 chr15 71191687 71191806 -14503948 - MER3 DNA MER1_type -62 147 48 1935 170 6 3 chr15 71191968 71192279 -14503475 - AluJo SINE Alu 0 312 1 226 356 17 17 chr15 71192322 71192440 -14503314 - MIR SINE MIR -122 140 23 635 253 52 71 chr15 71192608 71192790 -14502964 - LTR24B LTR ERV1 -7 569 396 2150 127 7 0 chr15 71192790 71193089 -14502665 - AluSx SINE Alu -11 301 1 635 253 52 71 chr15 71193089 71193274 -14502480 - LTR24B LTR ERV1 -180 396 209 409 175 3 30 chr15 71193319 71193417 -14502337 - LTR24B LTR ERV1 -372 93 1 1865 139 0 14 chr15 71193470 71193765 -14501989 - AluJo SINE Alu -21 291 1 1513 163 19 19 chr15 71194482 71194746 -14501008 - AluJo SINE Alu -48 264 1 1276 220 100 17 chr15 71194993 71195363 -14500391 - MER39 LTR ERV1 0 707 175 317 260 61 42 chr15 71195404 71195543 -14500211 - LTR48B LTR ERV1 -504 149 1 2374 106 0 0 chr15 71196533 71196845 -14498909 - AluSx SINE Alu 0 312 1 269 279 12 0 chr15 71197079 71197165 -14498589 + MIR SINE MIR 44 130 -78 245 319 52 0 chr15 71198302 71198418 -14497336 + L2 LINE L2 3148 3269 -3 284 118 0 20 chr15 71198849 71198900 -14496854 + (TTC)n Simple_repeat Simple_repeat 1 50 0 2339 105 7 0 chr15 71198918 71199223 -14496531 - AluSg SINE Alu -1 309 3 829 129 0 8 chr15 71199230 71199362 -14496392 - FLAM_C SINE Alu 0 133 3 915 111 0 0 chr15 71200095 71200221 -14495533 + FLAM_C SINE Alu 1 126 -7 26 50 0 0 chr15 71200221 71200261 -14495493 + AT_rich Low_complexity Low_complexity 1 40 0 2059 137 0 37 chr15 71200282 71200604 -14495150 + AluSx SINE Alu 1 310 -2 566 232 65 0 chr15 71200791 71200946 -14494808 + MIR SINE MIR 49 213 -49 1142 254 26 26 chr15 71201150 71201496 -14494258 + MER113 DNA MER1_type? 175 520 -1 676 286 25 0 chr15 71201816 71202019 -14493735 - MIR SINE MIR 0 262 55 361 273 109 42 chr15 71202708 71202873 -14492881 - MER5A DNA MER1_type 0 189 14 2141 93 11 0 chr15 71203884 71204164 -14491590 - AluSp SINE Alu 0 313 31 2172 107 38 0 chr15 71204310 71204600 -14491154 - AluSx SINE Alu -11 301 1 209 357 57 36 chr15 71204620 71204760 -14490994 - L2 LINE L2 -5 3267 3125 1347 32 0 0 chr15 71204843 71205000 -14490754 + L1PA5 LINE L1 5997 6153 -1 378 247 35 58 chr15 71205169 71205343 -14490411 - MIR3 SINE MIR -20 188 19 1326 221 88 50 chr15 71205434 71205854 -14489900 - MER39 LTR ERV1 -11 696 261 235 273 40 40 chr15 71205828 71205927 -14489827 - LTR48B LTR ERV1 -542 102 4 * 1770 155 0 32 chr15 71206360 71206670 -14489084 - AluJb SINE Alu -10 302 3 3103 190 56 25 chr15 71207034 71207750 -14488004 - L1MB8 LINE L1 -9 6169 5432 517 202 24 40 chr15 71207751 71207875 -14487879 + MER103 DNA DNA 45 166 0 1781 167 0 16 chr15 71208260 71208587 -14487167 - AluJb SINE Alu 0 312 3 637 196 145 17 chr15 71208648 71208827 -14486927 - MIR SINE MIR -32 230 29 21 36 0 0 chr15 71208872 71208900 -14486854 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chr15 71209118 71209153 -14486601 + (CA)n Simple_repeat Simple_repeat 1 35 0 452 254 27 60 chr15 71209631 71209816 -14485938 + MIR SINE MIR 84 262 0 314 342 45 7 chr15 71210123 71210278 -14485476 + MIR SINE MIR 53 213 -49 1177 204 24 88 chr15 71210394 71210733 -14485021 - MLT1B LTR MaLR -66 324 8 242 267 106 56 chr15 71211269 71211449 -14484305 + MER5A DNA MER1_type 1 189 0 245 82 41 20 chr15 71211962 71212011 -14483743 - MER5B DNA MER1_type -111 67 18 298 271 41 35 chr15 71212086 71212256 -14483498 + MIR SINE MIR 84 254 -8 419 282 69 8 chr15 71212489 71212620 -14483134 - MIR SINE MIR -87 175 37 233 73 0 24 chr15 71212943 71212984 -14482770 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 671 51 0 2 chr15 71212984 71213077 -14482677 - L1PA5 LINE L1 -24 6130 6040 208 398 0 8 chr15 71214242 71214360 -14481394 - MIR SINE MIR -118 144 28 224 227 40 53 chr15 71215064 71215139 -14480615 - L2 LINE L2 -2 3311 3238 1099 199 27 14 chr15 71215273 71215494 -14480260 - MER58A DNA MER1_type 0 224 1 308 320 87 17 chr15 71216324 71216496 -14479258 - MIR SINE MIR -77 185 2 346 251 135 13 chr15 71216655 71216810 -14478944 + MIR SINE MIR 33 208 -54 1020 240 9 4 chr15 71216925 71217158 -14478596 + MIR SINE MIR 29 262 0 1907 157 10 19 chr15 71217385 71217698 -14478056 + AluJb SINE Alu 1 310 -2 244 287 139 0 chr15 71218121 71218236 -14477518 - L2 LINE L2 -3 3310 3180 548 195 9 9 chr15 71218778 71218891 -14476863 + HERVL LTR ERVL 1 113 -5541 350 61 0 20 chr15 71218926 71218975 -14476779 + MADE1 DNA Mariner 32 79 -1 489 202 9 9 chr15 71219972 71220081 -14475673 + HERVL LTR ERVL 1 109 -5545 2613 129 48 5 chr15 71220151 71220563 -14475191 - L1PA16 LINE L1 -9 6157 5728 7984 195 49 2 chr15 71220563 71222514 -14473240 + HERVL LTR ERVL 102 2216 -3548 183 129 0 0 chr15 71222887 71222918 -14472836 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 225 191 0 0 chr15 71223301 71223343 -14472411 + GA-rich Low_complexity Low_complexity 1 42 0 656 310 119 68 chr15 71224057 71224605 -14471149 - MLT1G1 LTR MaLR 0 595 20 1297 156 9 5 chr15 71224658 71224869 -14470885 - MER20 DNA MER1_type -7 212 1 516 305 30 6 chr15 71224881 71225048 -14470706 + MER5B DNA MER1_type 6 176 -2 23 54 0 0 chr15 71225605 71225642 -14470112 + AT_rich Low_complexity Low_complexity 1 37 0 349 268 93 38 chr15 71225699 71225882 -14469872 - MIR SINE MIR -44 218 26 326 285 139 13 chr15 71226850 71227001 -14468753 - MIR3 SINE MIR -1 207 38 524 244 57 62 chr15 71227382 71227575 -14468179 - MLT1L LTR MaLR -417 198 7 643 323 30 4 chr15 71227585 71227817 -14467937 + MIR SINE MIR 25 262 0 1816 269 292 34 chr15 71228008 71229767 -14465987 + L2 LINE L2 7 2218 -1096 501 264 0 21 chr15 71229768 71229912 -14465842 + L2 LINE L2 2511 2651 -663 445 258 142 0 chr15 71229917 71230072 -14465682 - L2 LINE L2 -226 3087 2911 595 259 76 45 chr15 71230287 71230511 -14465243 + MER102a DNA MER1_type 92 322 -8 364 266 63 14 chr15 71231571 71231714 -14464040 + MIR SINE MIR 110 259 -3 316 296 66 21 chr15 71232618 71232993 -14462761 + L1ME4a LINE L1 5561 6106 -15 337 266 83 62 chr15 71232999 71233191 -14462563 - L2 LINE L2 -1 3312 3117 245 221 103 103 chr15 71233284 71233420 -14462334 + MER58C DNA MER1_type 79 214 -1 217 282 56 0 chr15 71233421 71233492 -14462262 - L2 LINE L2 -209 3063 2989 312 324 86 31 chr15 71233795 71234017 -14461737 - MIR SINE MIR -9 253 20 423 56 0 0 chr15 71234139 71234193 -14461561 + (TCC)n Simple_repeat Simple_repeat 3 56 0 369 329 7 13 chr15 71234585 71234740 -14461014 + MIR3 SINE MIR 3 156 -52 738 198 139 3 chr15 71234784 71235314 -14460440 - LTR50 LTR ERVL -3 792 1 340 165 12 35 chr15 71235392 71235477 -14460277 - L1MA4 LINE L1 -3 6297 6215 2381 49 28 0 chr15 71235481 71235766 -14459988 + AluY SINE Alu 17 309 -2 30 27 0 0 chr15 71235869 71235906 -14459848 + AT_rich Low_complexity Low_complexity 1 37 0 241 291 27 45 chr15 71235911 71236021 -14459733 - MIR3 SINE MIR -29 179 72 640 188 134 5 chr15 71236096 71236258 -14459496 + MER5A DNA MER1_type 4 189 0 288 213 0 0 chr15 71236422 71236526 -14459228 + (CA)n Simple_repeat Simple_repeat 1 104 0 219 298 32 39 chr15 71236531 71236736 -14459018 + L2 LINE L2 2808 3050 -222 9319 159 47 5 chr15 71236998 71238713 -14457041 + L1 LINE L1 3198 4985 -1161 261 222 0 0 chr15 71240136 71240199 -14455555 + CT-rich Low_complexity Low_complexity 4 66 0 230 301 7 84 chr15 71240285 71240428 -14455326 - MIR3 SINE MIR -62 146 15 884 260 147 31 chr15 71240893 71241312 -14454442 - MLT1J2 LTR MaLR 0 446 1 2198 134 0 0 chr15 71241649 71241954 -14453800 - AluSx SINE Alu -7 305 1 267 294 15 0 chr15 71242042 71242110 -14453644 + MIR SINE MIR 81 149 -59 419 187 86 65 chr15 71242344 71242483 -14453271 - MLT1K LTR MaLR -341 247 106 208 121 0 0 chr15 71242560 71242593 -14453161 + (CA)n Simple_repeat Simple_repeat 1 33 0 2198 79 3 0 chr15 71242755 71243045 -14452709 + L1PB1 LINE L1 5860 6150 -1 1820 258 99 7 chr15 71243631 71244089 -14451665 - L2 LINE L2 -298 3015 2456 1741 167 7 4 chr15 71244089 71244370 -14451384 + AluJb SINE Alu 24 305 -7 1820 258 99 7 chr15 71244370 71244632 -14451122 - L2 LINE L2 -857 2456 2219 375 241 0 0 chr15 71244655 71244734 -14451020 + L2 LINE L2 3235 3313 0 346 47 0 0 chr15 71245585 71245628 -14450126 + (TTTA)n Simple_repeat Simple_repeat 2 176 0 2305 86 0 0 chr15 71245628 71245907 -14449847 - AluSc SINE Alu -27 282 4 1951 158 3 3 chr15 71245912 71246209 -14449545 - AluJb SINE Alu -15 297 1 325 286 0 0 chr15 71246212 71246296 -14449458 + MIR SINE MIR 64 147 -115 184 122 49 0 chr15 71246298 71246339 -14449415 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 189 255 0 0 chr15 71246791 71246838 -14448916 + L2 LINE L2 3264 3310 -3 228 196 0 0 chr15 71247418 71247464 -14448290 - MIR SINE MIR -63 145 100 247 321 0 0 chr15 71247949 71248033 -14447721 - MIR3 SINE MIR 0 208 125 1561 182 40 4 chr15 71248045 71248320 -14447434 - AluJo SINE Alu -23 289 5 257 65 22 43 chr15 71248500 71248546 -14447208 - MSTA LTR MaLR -47 381 337 2825 117 41 0 chr15 71249967 71250378 -14445376 - MSTA LTR MaLR 0 428 1 230 232 0 37 chr15 71250403 71250485 -14445269 + (GGGTG)n Simple_repeat Simple_repeat 4 82 0 1445 186 6 58 chr15 71251120 71251432 -14444322 - AluJo SINE Alu -16 296 1 405 197 212 0 chr15 71251470 71251602 -14444152 + MLT1J2 LTR MaLR 3 162 -288 235 306 24 12 chr15 71251646 71251731 -14444023 + MLT1J1 LTR MaLR 361 446 0 270 317 56 25 chr15 71252060 71252221 -14443533 + MIR SINE MIR 75 240 -22 481 255 20 0 chr15 71252224 71252326 -14443428 + L2 LINE L2 3146 3249 -23 1258 35 0 0 chr15 71252365 71252510 -14443244 + AluY SINE Alu 164 308 -3 208 290 16 16 chr15 71252894 71252956 -14442798 - MIR3 SINE MIR -48 160 99 396 309 74 25 chr15 71253279 71253441 -14442313 - MLT1K LTR MaLR -417 171 2 1973 155 0 17 chr15 71253680 71253977 -14441777 - AluSx SINE Alu -20 292 1 222 333 172 0 chr15 71254116 71254209 -14441545 - L2 LINE L2 0 3272 3164 217 182 15 45 chr15 71254245 71254311 -14441443 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 2581 113 8 3 chr15 71255012 71255374 -14440380 - THE1B LTR MaLR 0 364 1 539 250 127 52 chr15 71255464 71255676 -14440078 + MIR SINE MIR 10 237 -25 226 222 137 98 chr15 71255708 71255861 -14439893 - MLT1J2 LTR MaLR -24 426 268 * 375 243 83 90 chr15 71255830 71256103 -14439651 - MLT1I LTR MaLR -123 286 50 280 293 102 42 chr15 71257946 71258273 -14437481 - L1ME LINE L1 -520 5601 5255 2035 154 133 13 chr15 71258405 71258787 -14436967 - MSTA LTR MaLR 0 428 1 2081 134 7 7 chr15 71258830 71259137 -14436617 + AluJb SINE Alu 1 307 -5 499 213 69 56 chr15 71259554 71259714 -14436040 + MER5B DNA MER1_type 3 164 -14 2597 54 0 0 chr15 71260078 71260374 -14435380 - AluY SINE Alu -15 296 1 2317 122 43 54 chr15 71261018 71261289 -14434465 + L1MA8 LINE L1 5856 6122 -169 1882 161 3 20 chr15 71261289 71261588 -14434166 + AluJb SINE Alu 1 294 -18 2317 122 43 54 chr15 71261588 71261757 -14433997 + L1MA8 LINE L1 6122 6291 0 1777 170 5 100 chr15 71262879 71262960 -14432794 - MLT1B LTR MaLR -2 388 301 2255 105 7 0 chr15 71262960 71263254 -14432500 - AluSx SINE Alu -16 296 1 1777 170 5 100 chr15 71263254 71263601 -14432153 - MLT1B LTR MaLR -89 301 1 180 302 0 0 chr15 71263613 71263656 -14432098 - L2 LINE L2 -13 3259 3217 2112 122 0 26 chr15 71263790 71264101 -14431653 + AluJb SINE Alu 1 303 -9 204 125 0 0 chr15 71264222 71264254 -14431500 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1906 210 30 9 chr15 71264854 71265283 -14430471 + L1M4 LINE L1 3685 4122 -2024 616 310 40 22 chr15 71265291 71265517 -14430237 + MIR SINE MIR 23 252 -10 4042 118 55 0 chr15 71266755 71267374 -14428380 + MER39B LTR ERV1 1 653 0 752 271 48 16 chr15 71268023 71268274 -14427480 + MIR SINE MIR 2 260 -2 799 137 38 23 chr15 71269453 71269584 -14426170 - FLAM_C SINE Alu 0 133 1 235 169 0 34 chr15 71269708 71269767 -14425987 + L1MC4 LINE L1 6636 6692 -1350 802 175 0 28 chr15 71269826 71269969 -14425785 + FLAM_C SINE Alu 5 143 0 2156 119 0 0 chr15 71269980 71270288 -14425466 + AluSx SINE Alu 1 308 0 2488 141 89 47 chr15 71270307 71271001 -14424753 - MER51A LTR ERV1 0 640 3 1130 128 0 0 chr15 71271001 71271157 -14424597 + FRAM SINE Alu 9 164 -12 463 351 5 5 chr15 71271263 71271451 -14424303 - MIR SINE MIR -16 246 59 180 179 0 0 chr15 71271674 71271713 -14424041 + T-rich Low_complexity Low_complexity 1 39 0 2515 74 7 0 chr15 71272296 71272606 -14423148 - AluSx SINE Alu 0 312 1 312 258 62 23 chr15 71272776 71272904 -14422850 + MER94 DNA DNA 1 133 -1 892 157 0 0 chr15 71273305 71273445 -14422309 - AluJb SINE Alu -10 302 163 831 122 5 149 chr15 71273447 71273635 -14422119 - MER106A DNA MER1_type -69 167 7 218 297 16 0 chr15 71275405 71275469 -14420285 + MIR3 SINE MIR 111 175 -33 25 31 0 0 chr15 71275692 71275724 -14420030 + AT_rich Low_complexity Low_complexity 1 32 0 515 90 0 52 chr15 71275877 71276011 -14419743 + (TA)n Simple_repeat Simple_repeat 2 128 0 1578 175 48 70 chr15 71276069 71276468 -14419286 + L1MC5 LINE L1 6923 7312 -649 1234 182 0 0 chr15 71276531 71276734 -14419020 + MER3 DNA MER1_type 7 209 0 332 140 0 0 chr15 71276691 71276741 -14419013 - MER3 DNA MER1_type -119 90 41 * 468 194 32 0 chr15 71276746 71276839 -14418915 + L1MC5 LINE L1 7342 7437 -524 1834 179 9 3 chr15 71276846 71277164 -14418590 - MER2 DNA MER2_type -25 320 1 1208 202 42 85 chr15 71277164 71277683 -14418071 + L1MC5 LINE L1 7433 7929 -32 376 299 47 24 chr15 71277923 71278050 -14417704 + L1MEd LINE L1 561 690 -5429 406 254 14 78 chr15 71278056 71278198 -14417556 + MER94 DNA DNA 1 133 -1 898 149 174 0 chr15 71278308 71278469 -14417285 + MER5A DNA MER1_type 1 189 0 249 299 2 24 chr15 71279480 71279592 -14416162 - MER5A DNA MER1_type -68 121 1 600 297 15 15 chr15 71279816 71280018 -14415736 + MIR SINE MIR 61 262 0 338 315 107 0 chr15 71280953 71281102 -14414652 - MIR SINE MIR -78 184 20 190 263 21 42 chr15 71281438 71281533 -14414221 + L3 LINE CR1 1431 1523 -54 308 286 84 39 chr15 71281543 71281697 -14414057 - MER5B DNA MER1_type -17 161 1 3666 116 2 0 chr15 71281714 71282225 -14413529 + MER75 DNA T2_type 1 512 -2 6448 89 64 4 chr15 71283306 71285020 -14410734 - L1PA13 LINE L1 -1 6162 4396 336 273 50 10 chr15 71285150 71285249 -14410505 + MIR SINE MIR 37 139 -123 199 284 222 0 chr15 71285340 71285421 -14410333 + L2 LINE L2 3122 3220 -52 2550 87 0 0 chr15 71286294 71286604 -14409150 - AluSg SINE Alu 0 310 1 525 207 74 0 chr15 71286795 71286916 -14408838 - LTR16C LTR ERVL -2 489 360 1294 186 53 142 chr15 71286917 71287348 -14408406 - MLT2B1 LTR ERVL -1 413 21 462 213 118 37 chr15 71287455 71287591 -14408163 - LTR16C LTR ERVL -274 217 71 213 241 148 46 chr15 71287975 71288083 -14407671 - MIR SINE MIR -65 197 79 263 180 0 16 chr15 71288297 71288332 -14407422 + CT-rich Low_complexity Low_complexity 2 37 -24 2091 103 13 13 chr15 71288332 71288632 -14407122 - AluSx SINE Alu -12 300 1 263 180 0 16 chr15 71288632 71288657 -14407097 + CT-rich Low_complexity Low_complexity 37 61 0 3279 187 80 0 chr15 71289762 71290377 -14405377 - LTR65 LTR ERV1 -5 664 1 353 213 0 12 chr15 71290427 71290507 -14405247 - LTR30 LTR ERV1 -98 624 546 399 289 33 14 chr15 71290736 71290947 -14404807 + MER113 DNA MER1_type? 7 221 -300 917 176 105 128 chr15 71291178 71291616 -14404138 - MLT1A1 LTR MaLR 0 428 1 457 324 16 0 chr15 71291728 71291910 -14403844 + MIR SINE MIR 46 230 -32 197 101 51 72 chr15 71292396 71292534 -14403220 + (TTATA)n Simple_repeat Simple_repeat 1 135 0 197 260 137 0 chr15 71292610 71292683 -14403071 - L2 LINE L2 -2 3311 3229 878 200 46 27 chr15 71292853 71293218 -14402536 + MLT1C LTR MaLR 32 436 -31 1022 205 31 35 chr15 71295848 71296107 -14399647 - MIR SINE MIR 0 262 5 216 292 44 18 chr15 71296291 71296404 -14399350 + MIR SINE MIR 22 137 -71 866 184 43 11 chr15 71296404 71296589 -14399165 + MSTB2 LTR MaLR 1 191 -266 277 133 0 0 chr15 71296598 71296643 -14399111 + MIR SINE MIR 64 108 -154 227 309 44 83 chr15 71296656 71296860 -14398894 - L2 LINE L2 -532 2782 2587 1152 106 0 0 chr15 71296966 71297136 -14398618 + (TCCCC)n Simple_repeat Simple_repeat 4 173 0 188 185 19 0 chr15 71297141 71297195 -14398559 + CT-rich Low_complexity Low_complexity 2 56 0 348 364 72 26 chr15 71297803 71298105 -14397649 + L1ME1 LINE L1 3826 4140 -2006 389 309 85 43 chr15 71298159 71298733 -14397021 + L1ME1 LINE L1 4156 4775 -1371 2086 145 3 0 chr15 71298733 71299037 -14396717 + AluSx SINE Alu 6 310 -2 389 309 85 43 chr15 71299037 71299275 -14396479 + L1ME1 LINE L1 4775 5002 -1144 1707 250 39 5 chr15 71299285 71299717 -14396037 + L1ME1 LINE L1 5715 6161 -5 989 222 31 27 chr15 71299907 71300164 -14395590 - MIR SINE MIR 0 262 5 302 369 53 25 chr15 71300473 71300828 -14394926 + L1MC/D LINE L1 5463 5827 -1981 1417 235 7 10 chr15 71300864 71301162 -14394592 - MLT1E2 LTR MaLR 0 626 330 7642 47 2 0 chr15 71301169 71302542 -14393212 - L1PA5 LINE L1 0 6154 4774 1776 59 0 0 chr15 71302542 71302762 -14392992 + L1PA5 LINE L1 4535 4754 -1392 1055 256 97 22 chr15 71302762 71303082 -14392672 - MLT1E2 LTR MaLR -280 344 1 1939 158 23 40 chr15 71303382 71303453 -14392301 - MER2 DNA MER2_type 0 344 273 2089 122 21 0 chr15 71303453 71303739 -14392015 + AluSq SINE Alu 1 292 -21 1939 158 23 40 chr15 71303739 71304016 -14391738 - MER2 DNA MER2_type -71 273 2 1382 207 114 3 chr15 71304154 71304497 -14391257 - L1MDb LINE L1 -4390 2150 1770 663 221 98 54 chr15 71304507 71304711 -14391043 - MER20 DNA MER1_type -6 213 1 36 0 0 0 chr15 71304744 71304780 -14390974 + AT_rich Low_complexity Low_complexity 1 36 0 1468 260 43 61 chr15 71304781 71305202 -14390552 - L1MDb LINE L1 -4828 1712 1285 2578 65 0 0 chr15 71305202 71305511 -14390243 - AluY SINE Alu -2 309 1 1468 260 43 61 chr15 71305511 71305720 -14390034 - L1MDb LINE L1 -5255 1285 1114 2143 196 99 11 chr15 71305720 71306184 -14389570 - MLT1D LTR MaLR 0 505 1 1468 260 43 61 chr15 71306184 71306386 -14389368 - L1MDb LINE L1 -5426 1114 910 378 0 0 0 chr15 71306700 71306742 -14389012 + (GA)n Simple_repeat Simple_repeat 1 42 0 791 327 9 28 chr15 71306957 71307278 -14388476 - L1MDb LINE L1 -6210 330 16 241 273 71 91 chr15 71307720 71307819 -14387935 + L2 LINE L2 3176 3272 0 604 251 85 60 chr15 71307979 71308262 -14387492 - L2 LINE L2 -36 3277 2988 2370 101 3 0 chr15 71308699 71308997 -14386757 - AluSx SINE Alu -13 299 1 289 270 96 52 chr15 71309068 71309183 -14386571 + L2 LINE L2 3153 3272 0 660 211 45 8 chr15 71309423 71309556 -14386198 - MIR SINE MIR -119 143 6 580 254 39 29 chr15 71309563 71309766 -14385988 + MIR SINE MIR 17 224 -38 520 209 79 7 chr15 71310389 71310528 -14385226 + L1ME1 LINE L1 6018 6166 0 256 215 89 0 chr15 71310769 71310848 -14384906 - L2 LINE L2 -30 3242 3157 729 240 67 48 chr15 71311048 71311288 -14384466 + MIR SINE MIR 16 262 0 433 293 70 39 chr15 71311349 71311815 -14383939 - L2 LINE L2 -117 3196 2728 208 243 100 14 chr15 71312662 71312732 -14383022 + MIR SINE MIR 47 122 -140 2232 115 0 0 chr15 71313660 71313964 -14381790 - AluY SINE Alu -7 304 1 210 71 0 0 chr15 71314109 71314137 -14381617 + (TA)n Simple_repeat Simple_repeat 2 29 0 28150 25 0 0 chr15 71314299 71318333 -14377421 - L1PA3 LINE L1 0 6155 2121 843 233 40 5 chr15 71418338 71418540 -14277214 - MER3 DNA MER1_type 0 209 1 2256 118 0 3 chr15 71419467 71419764 -14275990 + AluSg SINE Alu 1 296 -14 452 281 54 94 chr15 71419876 71420079 -14275675 + MIR SINE MIR 62 256 -6 489 303 117 11 chr15 71420150 71420338 -14275416 + MIR SINE MIR 49 256 -6 900 209 97 0 chr15 71420580 71420786 -14274968 - MIR SINE MIR -21 241 16 2512 135 35 4 chr15 71421052 71421473 -14274281 - MSTA LTR MaLR 0 428 1 423 281 13 12 chr15 71421884 71422045 -14273709 - MIR SINE MIR -4 258 12 267 278 42 0 chr15 71423499 71423571 -14272183 + MIR SINE MIR 55 129 -133 1463 160 84 11 chr15 71424600 71424893 -14270861 - AluSx SINE Alu 0 312 1 3237 155 28 13 chr15 71425112 71425726 -14270028 - L1MB2 LINE L1 -7 6164 5542 423 269 46 32 chr15 71425865 71426081 -14269673 + LTR33 LTR ERVL 301 519 -2 549 217 157 18 chr15 71426084 71426250 -14269504 + MIR SINE MIR 74 262 0 186 133 0 0 chr15 71427376 71427406 -14268348 + (TC)n Simple_repeat Simple_repeat 2 31 0 498 293 40 76 chr15 71427590 71427625 -14268129 - L2 LINE L2 -1 3312 3277 2320 102 7 0 chr15 71427625 71427920 -14267834 + AluSg SINE Alu 1 297 -13 498 293 40 76 chr15 71427920 71428082 -14267672 - L2 LINE L2 -36 3277 3122 227 307 310 15 chr15 71428081 71428475 -14267279 - L2 LINE L2 -337 2977 2468 * 222 378 56 0 chr15 71428788 71428878 -14266876 - MIR SINE MIR -92 116 22 341 331 50 12 chr15 71429021 71429181 -14266573 + L1ME4a LINE L1 5719 5884 -237 449 228 179 28 chr15 71431787 71431932 -14263822 + MIR SINE MIR 34 200 -62 1863 148 0 11 chr15 71431932 71432202 -14263552 + AluSx SINE Alu 23 289 -23 1546 180 0 34 chr15 71432297 71432591 -14263163 + AluJb SINE Alu 21 304 -8 3832 166 65 38 chr15 71433627 71434106 -14261648 - L1MB7 LINE L1 -16 6168 5703 2289 122 3 0 chr15 71434106 71434417 -14261337 - AluSx SINE Alu 0 312 1 3832 166 65 38 chr15 71434417 71434877 -14260877 - L1MB7 LINE L1 -481 5703 5199 213 282 77 13 chr15 71434968 71435046 -14260708 + L2 LINE L2 3190 3272 0 478 175 92 17 chr15 71436487 71436607 -14259147 - Charlie1 DNA MER1_type -1 2760 2632 * 499 237 172 33 chr15 71436577 71436792 -14258962 - Charlie1 DNA MER1_type -2510 251 7 773 315 22 4 chr15 71437640 71437872 -14257882 - MIR SINE MIR -25 237 2 2223 131 3 0 chr15 71437889 71438194 -14257560 - AluSx SINE Alu -6 306 1 203 272 36 113 chr15 71439281 71439350 -14256404 + L2 LINE L2 2575 2648 -666 1135 248 78 11 chr15 71439350 71439520 -14256234 - AluSx SINE Alu 0 302 104 380 12 50 38 chr15 71439520 71439600 -14256154 + (TA)n Simple_repeat Simple_repeat 1 81 0 1135 248 78 11 chr15 71439600 71439711 -14256043 - AluSx SINE Alu -198 104 2 203 272 36 113 chr15 71439711 71439836 -14255918 + L2 LINE L2 2648 2754 -560 6475 108 32 1 chr15 71439939 71441340 -14254414 - L1PA8A LINE L1 -404 5727 4288 244 239 26 94 chr15 71441473 71441590 -14254164 - MIR SINE MIR -55 207 99 234 312 104 16 chr15 71442297 71442422 -14253332 + MIR3 SINE MIR 19 154 -54 370 294 28 9 chr15 71442667 71442776 -14252978 + L2 LINE L2 3202 3312 -1 240 321 171 21 chr15 71442985 71443125 -14252629 - MIR3 SINE MIR 0 208 48 186 43 0 0 chr15 71443362 71443385 -14252369 + (A)n Simple_repeat Simple_repeat 1 23 0 459 294 107 21 chr15 71444640 71444827 -14250927 + MIR SINE MIR 10 212 -50 1132 297 197 16 chr15 71445012 71446175 -14249579 + L2 LINE L2 1911 3287 -26 187 241 86 0 chr15 71446537 71446595 -14249159 + MIR SINE MIR 117 179 -83 * 214 346 131 42 chr15 71446568 71447250 -14248504 + L2 LINE L2 2130 2871 -443 283 331 56 6 chr15 71447708 71447868 -14247886 - MIR SINE MIR -75 187 20 1435 119 0 0 chr15 71447868 71448078 -14247676 + L1MA3 LINE L1 6088 6297 -8 254 234 51 25 chr15 71448999 71449131 -14246623 + MIR SINE MIR 43 177 -31 2739 3 0 0 chr15 71449930 71450232 -14245522 + AluY SINE Alu 1 302 -9 299 204 122 48 chr15 71450376 71450523 -14245231 + L1ME4a LINE L1 5964 6121 0 450 0 0 0 chr15 71451107 71451157 -14244597 + (CA)n Simple_repeat Simple_repeat 2 51 0 281 171 43 71 chr15 71451561 71451631 -14244123 + L2 LINE L2 3242 3309 -4 542 274 93 33 chr15 71452237 71452452 -14243302 - L3 LINE CR1 -786 791 564 491 262 60 47 chr15 71452511 71452744 -14243010 + MIR SINE MIR 14 249 -13 229 287 221 28 chr15 71452769 71452950 -14242804 - L3 LINE CR1 -1095 482 267 2190 105 0 3 chr15 71452960 71453255 -14242499 - AluSx SINE Alu -18 294 1 269 283 131 0 chr15 71454422 71454521 -14241233 + MIR SINE MIR 117 228 -34 330 153 0 0 chr15 71454566 71454625 -14241129 + (CAG)n Simple_repeat Simple_repeat 1 59 0 21 57 0 0 chr15 71454861 71454896 -14240858 + AT_rich Low_complexity Low_complexity 1 35 0 765 185 0 0 chr15 71455000 71455178 -14240576 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 614 272 195 4 chr15 71455242 71455499 -14240255 + L2 LINE L2 2996 3301 -12 1996 128 3 7 chr15 71456290 71456594 -14239160 + AluSx SINE Alu 1 303 -9 281 276 102 10 chr15 71456937 71457035 -14238719 + MIR SINE MIR 45 151 -57 207 320 40 48 chr15 71457189 71457314 -14238440 + L2 LINE L2 2948 3071 -201 265 313 161 0 chr15 71458313 71458425 -14237329 + L2 LINE L2 3184 3313 0 181 249 121 121 chr15 71458661 71458826 -14236928 - L2 LINE L2 -87 3185 3021 382 274 125 42 chr15 71458943 71459111 -14236643 - MIR SINE MIR -1 261 80 219 69 0 0 chr15 71459763 71459792 -14235962 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 185 91 0 30 chr15 71459820 71459853 -14235901 + (TG)n Simple_repeat Simple_repeat 2 33 0 548 280 67 62 chr15 71460634 71460859 -14234895 - MIR SINE MIR -6 256 31 277 304 39 10 chr15 71461793 71461895 -14233859 - MIR3 SINE MIR -102 106 2 576 214 103 0 chr15 71463607 71463724 -14232030 + FLAM_C SINE Alu 2 130 -13 737 11 0 11 chr15 71463775 71463866 -14231888 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 190 268 0 36 chr15 71467090 71467146 -14228608 - MER5A DNA MER1_type -10 179 126 395 306 68 46 chr15 71467348 71467567 -14228187 - MIR SINE MIR -24 238 15 293 316 38 15 chr15 71467575 71467708 -14228046 - MER5A DNA MER1_type -3 186 51 269 306 10 41 chr15 71468503 71468601 -14227153 - L2 LINE L2 -7 3306 3212 280 285 85 46 chr15 71468741 71468871 -14226883 - MIR SINE MIR -70 192 58 621 48 0 0 chr15 71469853 71469937 -14225817 + AluY SINE Alu 228 311 -1 498 164 46 37 chr15 71471200 71471342 -14224412 - L1MB5 LINE L1 -35 6145 6002 22 0 0 0 chr15 71471347 71471369 -14224385 + AT_rich Low_complexity Low_complexity 1 22 0 211 330 10 0 chr15 71471510 71471610 -14224144 + (TA)n Simple_repeat Simple_repeat 2 102 0 357 280 153 24 chr15 71471631 71471900 -14223854 - L1ME3 LINE L1 -325 5837 5649 962 125 12 12 chr15 71471960 71472120 -14223634 - FRAM SINE Alu -18 158 1 429 289 54 32 chr15 71472121 71472398 -14223356 - L1ME3 LINE L1 -2271 5537 5255 26 0 0 0 chr15 71472445 71472471 -14223283 + AT_rich Low_complexity Low_complexity 1 26 0 2423 144 32 2 chr15 71472471 71472881 -14222873 - L1PA16 LINE L1 -9 6157 5736 1882 134 22 19 chr15 71472993 71473313 -14222441 + THE1C LTR MaLR 55 375 0 347 280 60 39 chr15 71474591 71474806 -14220948 - MIR SINE MIR -48 214 1 742 165 0 24 chr15 71475782 71475909 -14219845 - FLAM_C SINE Alu -7 136 13 214 283 76 22 chr15 71476133 71476225 -14219529 - MIR3 SINE MIR -6 202 106 406 330 52 52 chr15 71476730 71477021 -14218733 - L2 LINE L2 0 3313 3023 396 93 0 80 chr15 71477047 71477122 -14218632 - L1MA6 LINE L1 0 6300 6232 836 146 7 0 chr15 71477123 71477260 -14218494 + L1MA6 LINE L1 6082 6219 -81 799 295 205 14 chr15 71477266 71477706 -14218048 - L2 LINE L2 -280 3033 2510 476 259 9 0 chr15 71478113 71478221 -14217533 + MER103 DNA DNA 12 120 -46 438 339 42 13 chr15 71479060 71479367 -14216387 + ERVL LTR ERVL 3909 4256 -1261 2013 104 0 0 chr15 71479412 71479720 -14216034 - AluSx SINE Alu 0 312 5 680 247 186 30 chr15 71479761 71480133 -14215621 + MLT1G LTR MaLR 161 590 0 2380 50 0 10 chr15 71480984 71481283 -14214471 + AluY SINE Alu 1 296 -15 2008 212 12 28 chr15 71481283 71481859 -14213895 + L1 LINE L1 3018 3584 -2562 402 299 8 0 chr15 71481974 71482091 -14213663 + MIR SINE MIR 106 223 -39 213 299 19 65 chr15 71483303 71483410 -14212344 - MIR SINE MIR -2 260 159 1429 180 8 30 chr15 71483563 71483830 -14211924 - MLT1A1 LTR MaLR -104 261 1 240 205 73 48 chr15 71484536 71484629 -14211125 + MIR SINE MIR 53 148 -60 241 304 65 11 chr15 71484665 71484757 -14210997 - L2 LINE L2 -8 3264 3168 906 245 16 0 chr15 71484834 71485022 -14210732 + MER20 DNA MER1_type 29 219 0 2243 82 0 13 chr15 71485385 71485689 -14210065 - L1P5 LINE L1 -429 5722 5423 252 170 19 0 chr15 71485694 71485747 -14210007 + L1MB7 LINE L1 6131 6184 0 407 281 52 20 chr15 71485822 71485975 -14209779 - MIR SINE MIR -79 183 26 646 187 39 39 chr15 71486056 71486211 -14209543 - Tigger2 DNA MER2_type -10 2708 2554 * 1321 130 10 5 chr15 71486208 71486415 -14209339 - Tigger2 DNA MER2_type -2510 208 1 1437 282 49 36 chr15 71486439 71487088 -14208666 - L2 LINE L2 -1 3312 2659 1227 189 71 21 chr15 71487112 71487224 -14208530 + AluSx SINE Alu 1 106 -206 562 8 60 45 chr15 71487224 71487357 -14208397 + (TA)n Simple_repeat Simple_repeat 1 135 0 1227 189 71 21 chr15 71487357 71487525 -14208229 + AluSx SINE Alu 106 295 -17 3552 166 124 75 chr15 71487804 71488092 -14207662 + L1MC3 LINE L1 6804 7076 -709 232 203 31 31 chr15 71488092 71488156 -14207598 + MLT1F1 LTR MaLR 48 111 -456 3552 166 124 75 chr15 71488156 71488347 -14207407 + L1MC3 LINE L1 7076 7256 -529 216 86 0 0 chr15 71488347 71488382 -14207372 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3552 166 124 75 chr15 71488382 71488773 -14206981 + L1MC3 LINE L1 7256 7784 -1 526 257 29 29 chr15 71488829 71488965 -14206789 + L2 LINE L2 3134 3269 -3 502 263 66 74 chr15 71488968 71489065 -14206689 + L3 LINE CR1 1219 1315 -262 1135 185 75 29 chr15 71489065 71489373 -14206381 - MER33 DNA MER1_type -2 322 1 502 263 66 74 chr15 71489373 71489518 -14206236 + L3 LINE CR1 1315 1459 -118 279 251 98 68 chr15 71489958 71490121 -14205633 + MIR SINE MIR 87 254 -8 1897 123 0 4 chr15 71490188 71490465 -14205289 + AluSx SINE Alu 1 276 -36 432 223 135 26 chr15 71490498 71490691 -14205063 + L1MC5 LINE L1 7735 7948 -13 466 87 0 0 chr15 71490699 71490768 -14204986 + L1MB3 LINE L1 6111 6179 -4 629 231 16 0 chr15 71491968 71492089 -14203665 - MLT1I LTR MaLR 0 409 287 413 279 48 30 chr15 71492123 71492288 -14203466 - MLT1I LTR MaLR -201 208 41 2169 104 3 0 chr15 71492470 71492767 -14202987 + AluSx SINE Alu 1 298 -14 422 327 159 11 chr15 71493662 71494231 -14201523 + L2 LINE L2 2473 3140 -173 415 242 64 25 chr15 71494320 71494477 -14201277 - L2 LINE L2 -217 3055 2893 281 171 43 71 chr15 71496032 71496102 -14199652 - L2 LINE L2 -4 3309 3242 324 0 0 0 chr15 71496506 71496542 -14199212 + (TG)n Simple_repeat Simple_repeat 2 37 0 299 204 122 48 chr15 71497126 71497273 -14198481 - L1ME4a LINE L1 0 6121 5964 254 234 51 25 chr15 71498209 71498341 -14197413 - MIR SINE MIR -31 177 43 211 316 63 13 chr15 71498740 71498819 -14196935 - MIR SINE MIR -160 102 20 343 299 80 48 chr15 71499889 71500076 -14195678 - MIR SINE MIR -48 214 22 5234 186 27 18 chr15 71501123 71501403 -14194351 - L1P4 LINE L1 -564 5602 5326 2008 134 0 0 chr15 71501403 71501701 -14194053 - AluSx SINE Alu -14 298 1 5234 186 27 18 chr15 71501701 71502883 -14192871 - L1P4 LINE L1 -840 5326 4125 417 303 55 49 chr15 71502969 71503458 -14192296 - L1M4 LINE L1 -1091 5055 4564 1771 102 4 33 chr15 71505893 71506167 -14189587 - AluSx SINE Alu -17 295 30 1575 107 18 5 chr15 71506268 71506492 -14189262 - THE1C LTR MaLR -148 227 1 408 315 115 0 chr15 71507152 71507317 -14188437 + MIR SINE MIR 79 262 0 604 235 74 0 chr15 71507894 71508056 -14187698 + MIR SINE MIR 44 217 -45 1612 194 58 39 chr15 71508539 71508920 -14186834 - MLT1B LTR MaLR 0 390 3 845 232 145 56 chr15 71510139 71510532 -14185222 - MLT1C LTR MaLR -34 433 6 195 249 185 43 chr15 71510690 71510853 -14184901 + MIR SINE MIR 5 192 -63 1032 194 33 14 chr15 71511245 71511456 -14184298 - MER20 DNA MER1_type -4 215 1 2075 110 0 7 chr15 71511478 71511778 -14183976 + AluSq SINE Alu 1 298 -15 522 340 203 33 chr15 71512574 71513693 -14182061 - L3 LINE CR1 -34 1543 235 1024 102 7 7 chr15 71513950 71514097 -14181657 - AluSq/x SINE Alu -166 147 1 529 122 10 20 chr15 71514109 71514207 -14181547 - Tigger3(Golem) DNA MER2_type -649 2380 2284 465 243 0 36 chr15 71514207 71514318 -14181436 - Tigger3(Golem) DNA MER2_type -2921 108 2 589 264 25 13 chr15 71516659 71516818 -14178936 + MIR SINE MIR 37 197 -65 2062 116 27 0 chr15 71516875 71517169 -14178585 + AluSg SINE Alu 1 302 -8 1628 210 3 9 chr15 71517538 71517886 -14177868 - L1 LINE L1 -793 5353 5008 * 2924 132 55 0 chr15 71517885 71518362 -14177392 + L1MA4 LINE L1 5706 6208 -92 243 0 0 0 chr15 71518368 71518395 -14177359 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 780 136 0 0 chr15 71518399 71518509 -14177245 - AluSg/x SINE Alu -31 281 172 525 277 78 12 chr15 71518893 71519059 -14176695 + MIR SINE MIR 19 195 -67 1692 61 5 0 chr15 71519128 71519340 -14176414 - AluSq SINE Alu -64 249 37 725 194 82 39 chr15 71519340 71519546 -14176208 + MER20 DNA MER1_type 1 215 -4 955 86 8 19 chr15 71520345 71521015 -14174739 + (TA)n Simple_repeat Simple_repeat 1 662 0 369 215 19 84 chr15 71521029 71521136 -14174618 + MER5A DNA MER1_type 1 100 -89 1958 101 0 49 chr15 71521453 71521761 -14173993 - AluSx SINE Alu -19 293 1 187 248 95 48 chr15 71522146 71522251 -14173503 + MIR SINE MIR 141 250 -12 530 288 128 20 chr15 71522331 71522689 -14173065 + L1ME4a LINE L1 5708 6104 -17 1895 129 0 0 chr15 71522698 71522976 -14172778 - AluY SINE Alu -13 298 21 264 294 118 8 chr15 71524155 71524274 -14171480 + MIR SINE MIR 131 262 0 245 317 19 29 chr15 71525246 71525350 -14170404 + L2 LINE L2 2934 3036 -236 1922 139 35 0 chr15 71525771 71526059 -14169695 + Tigger3(Golem) DNA MER2_type 2731 3028 -1 1366 213 110 24 chr15 71526800 71527218 -14168536 + MLT1C LTR MaLR 6 459 -8 195 69 0 0 chr15 71527686 71527715 -14168039 + (CA)n Simple_repeat Simple_repeat 1 29 0 371 289 91 48 chr15 71527784 71527992 -14167762 + MIR SINE MIR 46 262 0 189 370 58 7 chr15 71527997 71528151 -14167603 + MIR3 SINE MIR 40 201 -7 307 361 105 21 chr15 71529893 71530131 -14165623 + L3 LINE CR1 248 505 -1072 220 291 52 82 chr15 71530933 71531067 -14164687 - L2 LINE L2 -214 3058 2929 1957 111 77 9 chr15 71531356 71531384 -14164370 - L1MA3 LINE L1 0 6305 6280 429 20 0 0 chr15 71531384 71531434 -14164320 + (TG)n Simple_repeat Simple_repeat 1 50 0 1957 111 77 9 chr15 71531434 71531729 -14164025 - L1MA3 LINE L1 -25 6280 5960 1889 113 12 64 chr15 71531787 71532113 -14163641 - AluSx SINE Alu -3 309 1 601 254 11 28 chr15 71532182 71532359 -14163395 + MER5B DNA MER1_type 5 178 0 183 229 0 0 chr15 71532501 71532536 -14163218 + MIR SINE MIR 216 250 -12 430 284 31 8 chr15 71533289 71533439 -14162315 + MIR SINE MIR 30 184 -63 261 268 84 37 chr15 71534090 71534212 -14161542 + L1ME4a LINE L1 5922 6058 -63 756 245 78 12 chr15 71534212 71534457 -14161297 - MIR SINE MIR 0 262 2 261 268 84 37 chr15 71534457 71534524 -14161230 + L1ME4a LINE L1 6058 6120 -1 531 267 63 16 chr15 71534751 71534942 -14160812 - MIR SINE MIR 0 262 63 372 324 99 14 chr15 71535428 71535650 -14160104 - MIR SINE MIR -6 256 16 204 316 95 36 chr15 71535858 71536026 -14159728 + MIR SINE MIR 67 244 -18 1145 292 69 32 chr15 71536211 71536949 -14158805 - L1ME3A LINE L1 -143 6011 5257 309 250 119 106 chr15 71536978 71537138 -14158616 - L1ME3A LINE L1 -902 5244 5083 371 275 21 67 chr15 71537756 71537922 -14157832 - MIR SINE MIR -45 163 5 304 303 30 30 chr15 71538700 71538832 -14156922 + MER5A DNA MER1_type 40 171 -18 278 242 42 21 chr15 71539917 71540012 -14155742 + MER103 DNA DNA 59 155 -11 324 291 29 22 chr15 71540147 71540299 -14155455 + MER5B DNA MER1_type 23 186 -3 215 323 0 0 chr15 71540924 71540986 -14154768 - L2 LINE L2 0 3272 3211 359 310 270 6 chr15 71541940 71542285 -14153469 - L2 LINE L2 -23 3249 2814 196 202 182 40 chr15 71542741 71542840 -14152914 + MIR SINE MIR 20 132 -76 233 316 25 13 chr15 71543417 71543496 -14152258 + MIR SINE MIR 2 81 -181 325 314 131 58 chr15 71543644 71544004 -14151750 - L2 LINE L2 0 3272 2887 390 238 136 95 chr15 71544733 71545175 -14150579 - L1ME3A LINE L1 -1781 4365 3906 180 0 0 0 chr15 71545197 71545217 -14150537 + (T)n Simple_repeat Simple_repeat 1 20 0 438 236 91 30 chr15 71545570 71545741 -14150013 - MIR SINE MIR -65 197 15 277 257 155 14 chr15 71546190 71546338 -14149416 - MIR SINE MIR -51 211 43 198 286 41 0 chr15 71546421 71546470 -14149284 + MIR SINE MIR 1 51 -211 294 255 38 75 chr15 71546480 71546586 -14149168 + MIR SINE MIR 20 121 -141 21 95 0 0 chr15 71546587 71546650 -14149104 + AT_rich Low_complexity Low_complexity 1 63 0 618 231 15 0 chr15 71546650 71546780 -14148974 + MIR SINE MIR 110 241 -21 2556 215 42 8 chr15 71546781 71547303 -14148451 - MLT1F LTR MaLR 0 542 3 840 193 91 28 chr15 71549180 71549434 -14146320 + MER33 DNA MER1_type 55 324 0 541 287 3 94 chr15 71549451 71549579 -14146175 + Charlie8 DNA MER1_type 1 139 -2278 1613 166 35 3 chr15 71549579 71549863 -14145891 - AluJo SINE Alu -19 293 1 541 287 3 94 chr15 71549863 71550041 -14145713 + Charlie8 DNA MER1_type 139 279 -2138 224 297 35 35 chr15 71550408 71550553 -14145201 - L2 LINE L2 -1157 2157 2013 950 203 34 0 chr15 71552185 71552362 -14143392 + MER5A DNA MER1_type 7 189 0 51 51 0 0 chr15 71552470 71552549 -14143205 + AT_rich Low_complexity Low_complexity 1 79 0 539 104 0 0 chr15 71552608 71552685 -14143069 - AluJ SINE Alu -28 284 208 831 160 42 0 chr15 71552686 71552830 -14142924 - AluJ SINE Alu -162 150 1 2119 100 0 7 chr15 71553193 71553493 -14142261 - AluSx SINE Alu -14 298 1 512 243 29 66 chr15 71553512 71553648 -14142106 + L2 LINE L2 3183 3313 0 539 179 77 26 chr15 71554034 71554190 -14141564 - Zaphod DNA AcHobo -30 4001 3838 404 219 12 0 chr15 71554174 71554256 -14141498 - Zaphod DNA AcHobo -1145 2886 2804 * 597 248 78 39 chr15 71554283 71554541 -14141213 + MER33 DNA MER1_type 54 321 -3 307 317 70 0 chr15 71554904 71555090 -14140664 - MER115 DNA AcHobo -157 536 338 1931 224 87 59 chr15 71555309 71556002 -14139752 + L1ME3A LINE L1 5454 6165 -5 844 227 123 40 chr15 71556010 71556310 -14139444 + Charlie7 DNA MER1_type 399 723 -1889 287 229 73 0 chr15 71556300 71556409 -14139345 + Charlie7 DNA MER1_type 2415 2531 -81 * 242 318 34 45 chr15 71557710 71557798 -14137956 + MIR SINE MIR 174 260 -2 233 296 105 40 chr15 71559426 71559673 -14136081 - L2 LINE L2 -340 2974 2712 640 287 57 24 chr15 71561125 71561334 -14134420 - MIR SINE MIR 0 262 47 277 271 80 96 chr15 71561439 71561475 -14134279 - MIR SINE MIR -27 235 200 1955 142 71 6 chr15 71561475 71561814 -14133940 + MER46B DNA MER2_type 1 236 0 277 271 80 96 chr15 71561814 71561965 -14133789 - MIR SINE MIR -62 200 51 342 90 45 75 chr15 71562049 71562116 -14133638 - MER58 DNA MER1_type 0 2420 2356 250 139 0 0 chr15 71562095 71562131 -14133623 - MER58 DNA MER1_type -2384 36 1 * 313 301 32 0 chr15 71562964 71563057 -14132697 - L2 LINE L2 -18 3295 3200 1470 137 42 11 chr15 71563202 71563464 -14132290 - L1PB2 LINE L1 -8 6143 5874 238 216 0 20 chr15 71563844 71563895 -14131859 - L1MB5 LINE L1 -61 6113 6064 3705 74 0 0 chr15 71563895 71564356 -14131398 + MER11C LTR ERVK 611 1071 0 378 197 118 0 chr15 71564468 71564544 -14131210 + MER33 DNA MER1_type 1 85 -239 655 177 73 0 chr15 71564571 71564735 -14131019 - Charlie5 DNA MER1_type -43 2569 2394 762 223 36 23 chr15 71565830 71566050 -14129704 - MIR SINE MIR -19 243 21 357 24 0 0 chr15 71566656 71566698 -14129056 + (TAA)n Simple_repeat Simple_repeat 2 43 0 966 185 13 48 chr15 71567139 71567366 -14128388 - MER20 DNA MER1_type 0 219 1 447 294 92 7 chr15 71567539 71567692 -14128062 + MIR SINE MIR 51 216 -46 2085 100 24 0 chr15 71567828 71568118 -14127636 - AluSx SINE Alu -15 297 1 1297 200 121 18 chr15 71568339 71568669 -14127085 - MLT1A1 LTR MaLR -1 364 1 1111 102 208 15 chr15 71568878 71569075 -14126679 + MER46A DNA MER2_type 2 236 0 * 3364 177 17 42 chr15 71569075 71569546 -14126208 + MER82 DNA MER2_type 24 476 -177 2372 71 0 0 chr15 71569546 71569843 -14125911 - AluY SINE Alu -14 297 1 3364 177 17 42 chr15 71569843 71570016 -14125738 + MER82 DNA MER2_type 476 652 -1 240 86 0 0 chr15 71570045 71570080 -14125674 + (CA)n Simple_repeat Simple_repeat 1 35 0 2041 125 0 3 chr15 71571350 71571646 -14124108 + AluSx SINE Alu 1 295 -17 461 281 61 96 chr15 71571763 71572126 -14123628 - L2 LINE L2 0 3272 2923 314 244 81 16 chr15 71573746 71573869 -14121885 - HsTC2 DNA Tc2 -158 1740 1610 297 0 0 0 chr15 71575202 71575235 -14120519 + (CA)n Simple_repeat Simple_repeat 1 33 0 335 279 31 31 chr15 71576029 71576158 -14119596 + MIR SINE MIR 19 147 -61 239 240 115 0 chr15 71576321 71576417 -14119337 + MLT1J1 LTR MaLR 147 253 -193 1906 81 240 196 chr15 71576837 71577392 -14118362 + LTR12 LTR ERV1 1 579 -135 4318 83 83 22 chr15 71577583 71578212 -14117542 + PABL_B LTR ERV1 1 667 0 2330 86 3 0 chr15 71578455 71578759 -14116995 - AluSp SINE Alu -8 305 1 316 329 62 6 chr15 71578896 71579057 -14116697 + MIR SINE MIR 32 201 -61 * 690 291 123 11 chr15 71579047 71579359 -14116395 - L2 LINE L2 0 3313 2922 705 257 92 19 chr15 71580950 71581156 -14114598 + MIR SINE MIR 11 231 -31 572 301 98 17 chr15 71581690 71581926 -14113828 - MIR SINE MIR -6 256 2 1833 115 0 19 chr15 71582214 71582484 -14113270 - AluSq SINE Alu -48 265 1 250 240 230 10 chr15 71583265 71583365 -14112389 + MIR SINE MIR 17 138 -124 * 430 274 51 8 chr15 71583364 71583557 -14112197 - MIR SINE MIR -10 252 2 199 301 0 41 chr15 71583564 71583637 -14112117 + MIR SINE MIR 147 216 -46 499 223 0 10 chr15 71584995 71585098 -14110656 + MIR3 SINE MIR 92 193 -15 1063 221 143 88 chr15 71585801 71586313 -14109441 + MLT1F LTR MaLR 3 542 0 410 259 0 0 chr15 71586313 71586394 -14109360 + MLT1I LTR MaLR 101 181 -228 500 257 0 0 chr15 71586544 71586649 -14109105 + MLT1I LTR MaLR 293 397 -12 261 346 94 45 chr15 71586932 71587134 -14108620 - MIR SINE MIR -31 231 20 459 235 0 42 chr15 71588509 71588628 -14107126 - L2 LINE L2 0 3313 3200 2665 149 26 2 chr15 71588730 71589146 -14106608 + MSTB LTR MaLR 1 426 0 302 331 71 18 chr15 71591049 71591218 -14104536 - MIR SINE MIR -50 212 35 960 203 10 20 chr15 71591247 71591444 -14104310 + MIR SINE MIR 43 237 -25 182 281 18 18 chr15 71591416 71591473 -14104281 + L2 LINE L2 3214 3270 -2 * 2041 222 75 10 chr15 71591872 71592386 -14103368 + MER119 DNA MER1_type 4 583 0 368 260 113 73 chr15 71592667 71592817 -14102937 - L2 LINE L2 -10 3303 3148 2145 81 0 3 chr15 71592938 71593271 -14102483 + AluY SINE Alu 1 332 0 890 236 101 52 chr15 71593307 71593654 -14102100 + MLT1D LTR MaLR 3 366 -139 235 29 0 0 chr15 71793692 71793726 -13902028 + L1PA3 LINE L1 6122 6155 0 367 231 34 0 chr15 71793845 71793962 -13901792 - L1M4 LINE L1 -1383 4763 4643 25 51 0 0 chr15 71793962 71794001 -13901753 + AT_rich Low_complexity Low_complexity 1 39 0 836 163 0 27 chr15 71794093 71794240 -13901514 - FLAM_C SINE Alu 0 143 1 242 62 0 0 chr15 71794788 71794820 -13900934 - Alu SINE Alu -101 32 1 983 216 118 6 chr15 71794821 71795177 -13900577 + L1M4 LINE L1 2751 3146 -3000 1814 141 62 33 chr15 71795188 71795331 -13900423 + L1MB3 LINE L1 5679 5816 -367 1984 146 7 0 chr15 71795331 71795633 -13900121 + AluSx SINE Alu 1 304 -8 1814 141 62 33 chr15 71795633 71795861 -13899893 + L1MB3 LINE L1 5816 6065 -118 2769 143 36 11 chr15 71796007 71796453 -13899301 + L1PB3 LINE L1 5695 6151 -3 314 148 98 0 chr15 71796475 71796536 -13899218 + L1MB8 LINE L1 6102 6168 -10 522 150 50 0 chr15 71796545 71796645 -13899109 - L1MA5A LINE L1 -451 5846 5742 * 830 118 236 11 chr15 71796626 71796804 -13898950 + L1MA5A LINE L1 6080 6297 0 2000 136 0 0 chr15 71796814 71797100 -13898654 + AluSg SINE Alu 1 286 -24 299 268 76 19 chr15 71798249 71798406 -13897348 + MER4B LTR ERV1 441 606 -4 2340 284 86 19 chr15 71798441 71799131 -13896623 - L1MEc LINE L1 -4564 1651 1008 1992 112 0 7 chr15 71799131 71799446 -13896308 - AluSx SINE Alu 0 313 1 2340 284 86 19 chr15 71799446 71800286 -13895468 - L1MEc LINE L1 -5207 1008 55 342 303 184 8 chr15 71800335 71800579 -13895175 + L1ME3A LINE L1 4696 4982 -1164 592 253 120 12 chr15 71800624 71800865 -13894889 + L1ME3A LINE L1 5681 5947 -223 24 0 0 0 chr15 71804081 71804105 -13891649 + AT_rich Low_complexity Low_complexity 1 24 0 588 29 0 0 chr15 71804133 71804203 -13891551 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 291 326 116 0 chr15 71804203 71804298 -13891456 - L2 LINE L2 -13 3259 3154 2019 167 3 9 chr15 71804772 71805102 -13890652 + MLT1A1 LTR MaLR 34 361 -4 2811 28 0 0 chr15 71805610 71805928 -13889826 + AluYb8 SINE Alu 1 318 0 5094 112 77 7 chr15 71805952 71806722 -13889032 + L1MA2 LINE L1 5477 6300 -4 239 213 140 59 chr15 71806788 71807009 -13888745 - L1MEd LINE L1 -5097 1022 784 213 39 0 0 chr15 71807300 71807326 -13888428 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr15 71807476 71807507 -13888247 + (TG)n Simple_repeat Simple_repeat 1 31 0 501 198 135 0 chr15 71807810 71807921 -13887833 + MER63 DNA MER1_type 1 752 -310 299 235 25 25 chr15 71807924 71808005 -13887749 + MER63 DNA MER1_type 982 1062 0 509 278 117 73 chr15 71809397 71809875 -13885879 - MLT1J LTR MaLR -2 509 11 218 313 148 38 chr15 71809992 71810369 -13885385 + L2 LINE L2 2796 3223 -49 1763 139 0 0 chr15 71810473 71810724 -13885030 + AluSx SINE Alu 42 292 -20 430 250 0 0 chr15 71810738 71810850 -13884904 - L1M4c LINE L1 -3386 2996 2885 1738 185 34 69 chr15 71810912 71811059 -13884695 + L1M4 LINE L1 4915 5066 -1080 1895 87 8 12 chr15 71811059 71811313 -13884441 - AluSq SINE Alu -60 253 1 1738 185 34 69 chr15 71811313 71811672 -13884082 + L1M4 LINE L1 5066 5403 -743 349 248 58 8 chr15 71811774 71811895 -13883859 - L1M4c LINE L1 -3753 2629 2503 6326 87 11 17 chr15 71812515 71813268 -13882486 - L1PA8A LINE L1 -16 6115 5359 2528 50 3 3 chr15 71813268 71813571 -13882183 - AluY SINE Alu -8 303 1 6326 87 11 17 chr15 71813571 71814468 -13881286 - L1PA8A LINE L1 -772 5359 4466 4509 133 26 0 chr15 71814468 71815196 -13880558 + L1P LINE L1 2854 3600 -2546 359 283 140 22 chr15 71815283 71815555 -13880199 - L1MC5 LINE L1 -178 7783 7480 2498 81 0 0 chr15 71815711 71816019 -13879735 + AluY SINE Alu 1 308 -3 351 263 83 32 chr15 71816052 71816270 -13879484 - L1M4c LINE L1 -4892 1671 1295 247 333 0 0 chr15 71816362 71816437 -13879317 + L1MC4 LINE L1 7827 7901 -141 345 24 0 0 chr15 71816437 71816479 -13879275 + (TG)n Simple_repeat Simple_repeat 2 43 0 1632 117 31 0 chr15 71816593 71816849 -13878905 + L1 LINE L1 4126 4389 -1757 404 135 14 0 chr15 71817258 71817332 -13878422 + CT-rich Low_complexity Low_complexity 1 75 0 201 125 21 104 chr15 71817568 71817616 -13878138 - MIR3 SINE MIR -39 169 126 469 234 213 7 chr15 71817701 71817842 -13877912 - MER5B DNA MER1_type -1 177 8 193 301 14 14 chr15 71818111 71818184 -13877570 + MIR SINE MIR 72 144 -118 465 304 105 5 chr15 71818230 71818421 -13877333 - Charlie8 DNA MER1_type -2141 276 67 186 239 0 0 chr15 71818487 71818533 -13877221 + MIR3 SINE MIR 162 207 -1 342 196 11 54 chr15 71819489 71819581 -13876173 + L1ME4a LINE L1 5975 6062 -59 254 286 92 37 chr15 71819834 71820128 -13875626 + L1ME4a LINE L1 5602 5911 -210 315 308 17 8 chr15 71820137 71820257 -13875497 + MIR SINE MIR 140 260 -2 243 0 0 0 chr15 71821233 71821260 -13874494 + (T)n Simple_repeat Simple_repeat 1 27 0 2161 136 3 0 chr15 71821260 71821583 -13874171 - LTR17 LTR ERV1 -454 326 3 2039 116 3 3 chr15 71821585 71821877 -13873877 - HERV17 LTR ERV1 0 8626 8335 255 103 0 0 chr15 71821867 71821906 -13873848 - HERV17 LTR ERV1 -1078 7548 7510 * 16372 48 3 1 chr15 71821899 71823822 -13871932 - HERV17 LTR ERV1 -2607 6019 4093 2113 121 50 16 chr15 71823793 71824313 -13871441 - HERV17 LTR ERV1 -7589 1037 481 * 1653 192 64 33 chr15 71824454 71824814 -13870940 - MLT1A2 LTR MaLR -3 371 1 2328 94 3 7 chr15 71824935 71825244 -13870510 + AluSg SINE Alu 1 308 -2 1334 178 68 29 chr15 71825352 71825633 -13870121 + MLT1E1 LTR MaLR 1 292 -362 578 141 20 154 chr15 71825666 71825760 -13869994 + MLT1E1 LTR MaLR 526 594 -60 1785 165 0 38 chr15 71825760 71826076 -13869678 - AluJb SINE Alu -8 304 1 578 141 20 154 chr15 71826076 71826130 -13869624 + MLT1E1 LTR MaLR 594 654 0 4057 60 2 4 chr15 71826377 71826863 -13868891 + L1PA7 LINE L1 5670 6154 0 509 250 47 6 chr15 71826904 71827076 -13868678 + L1ME4a LINE L1 2128 2306 -3840 * 763 266 86 13 chr15 71827069 71827370 -13868384 + L1ME4a LINE L1 3881 4203 -1943 27 0 0 0 chr15 71827435 71827462 -13868292 + AT_rich Low_complexity Low_complexity 1 27 0 531 239 41 85 chr15 71827527 71827780 -13867974 + L1ME4a LINE L1 5657 5895 -226 2170 105 14 3 chr15 71827780 71828074 -13867680 + AluSx SINE Alu 1 297 -15 531 239 41 85 chr15 71828074 71828138 -13867616 + L1ME4a LINE L1 5895 5960 -161 1966 94 11 8 chr15 71828496 71828761 -13866993 - AluSc SINE Alu -6 303 38 1187 209 19 0 chr15 71829258 71829473 -13866281 + MER20 DNA MER1_type 1 219 0 825 246 71 14 chr15 71829592 71829873 -13865881 + L1MEc LINE L1 45 341 -6055 1569 266 14 2 chr15 71829895 71830319 -13865435 + L1MEc LINE L1 396 824 -5572 948 170 18 0 chr15 71830321 71830492 -13865262 + AluJb SINE Alu 138 311 -1 589 232 67 16 chr15 71830508 71830702 -13865052 + L1MEc LINE L1 811 1014 -5382 267 264 168 24 chr15 71830748 71830873 -13864881 - L2 LINE L2 -45 3268 3126 358 253 40 53 chr15 71831184 71831334 -13864420 + MLT1H LTR MaLR 26 173 -376 264 372 11 11 chr15 71831644 71831738 -13864016 - MIR SINE MIR -152 110 17 226 312 56 33 chr15 71831750 71831965 -13863789 + L1ME LINE L1 5622 5841 -280 298 330 31 18 chr15 71832822 71832984 -13862770 + MIR SINE MIR 16 182 -26 182 300 71 0 chr15 71833094 71833164 -13862590 + L3 LINE CR1 1235 1309 -268 2254 90 0 20 chr15 71836264 71836563 -13859191 + AluSq SINE Alu 8 300 -13 502 183 31 0 chr15 71836566 71836671 -13859083 - MER5A DNA MER1_type -77 112 4 875 206 44 6 chr15 71836726 71836906 -13858848 - MER5A DNA MER1_type -2 187 1 241 209 0 0 chr15 71837966 71838009 -13857745 + L1ME LINE L1 5792 5834 -287 2205 94 0 3 chr15 71838030 71838317 -13857437 + AluSg SINE Alu 1 286 -24 21 36 0 0 chr15 71838869 71838897 -13856857 + AT_rich Low_complexity Low_complexity 1 28 0 329 328 115 51 chr15 71839546 71839955 -13855799 - L2 LINE L2 0 3272 2838 245 305 98 0 chr15 71840432 71840514 -13855240 - Tigger8 DNA MER2_type -568 98 9 197 182 0 0 chr15 71840563 71840596 -13855158 + L2 LINE L2 3222 3254 -18 282 271 129 29 chr15 71840949 71841119 -13854635 - L2 LINE L2 -205 3067 2881 1813 75 0 0 chr15 71842147 71842373 -13853381 + AluY SINE Alu 86 311 0 252 362 28 79 chr15 71842707 71842997 -13852757 + L2 LINE L2 2939 3213 -59 237 265 139 24 chr15 71843179 71843345 -13852409 - L1ME LINE L1 -302 5819 5635 235 293 51 38 chr15 71843392 71843549 -13852205 - L1ME LINE L1 -2075 4071 3913 900 267 129 64 chr15 71843571 71844043 -13851711 + LTR33 LTR ERVL 5 507 -14 530 261 48 43 chr15 71844353 71844541 -13851213 + HERV16 LTR ERVL 1752 1940 -3056 905 343 70 7 chr15 71844647 71845078 -13850676 + HERV16 LTR ERVL 2346 2803 -2961 586 270 68 36 chr15 71845076 71845298 -13850456 + HERV16 LTR ERVL 3415 3643 -2121 * 797 306 81 13 chr15 71845366 71845751 -13850003 + HERV16 LTR ERVL 3775 4185 -1579 403 326 86 16 chr15 71845828 71846073 -13849681 + HERV16 LTR ERVL 4296 4557 -1207 2440 55 6 32 chr15 71846076 71846387 -13849367 + AluY SINE Alu 1 303 -8 360 344 21 5 chr15 71846924 71847110 -13848644 + HERV16 LTR ERVL 5175 5363 -401 303 291 90 27 chr15 71847226 71847449 -13848305 - HAL1 LINE L1 -1209 1298 1062 384 305 42 16 chr15 71848363 71848553 -13847201 - L1ME4a LINE L1 -238 5883 5689 1426 224 39 7 chr15 71848656 71849115 -13846639 + L1ME2 LINE L1 4187 4660 -1486 891 150 0 27 chr15 71849893 71850040 -13845714 + FLAM_C SINE Alu 1 143 0 25 51 0 0 chr15 71850132 71850171 -13845583 + AT_rich Low_complexity Low_complexity 1 39 0 1464 258 108 19 chr15 71850171 71851032 -13844722 + L1ME2 LINE L1 4643 5581 -585 1943 104 83 3 chr15 71851032 71851321 -13844433 - AluSx SINE Alu 0 312 1 1464 258 108 19 chr15 71851321 71851348 -13844406 + L1ME2 LINE L1 5581 5604 -562 1626 193 55 14 chr15 71851348 71851696 -13844058 + MLT2D LTR ERVL 16 377 -37 207 114 0 0 chr15 71852880 71852915 -13842839 + (CA)n Simple_repeat Simple_repeat 1 35 0 368 332 66 18 chr15 71852926 71853212 -13842542 + L1MA5A LINE L1 5588 5887 -410 * 1987 219 48 29 chr15 71852959 71853485 -13842269 + L1ME2 LINE L1 5619 6154 -10 451 253 144 21 chr15 71853730 71853924 -13841830 - MLT1J LTR MaLR -46 465 248 483 230 0 0 chr15 71853929 71854042 -13841712 + L2 LINE L2 1591 1703 -1611 1889 152 18 0 chr15 71854052 71854329 -13841425 + AluSx SINE Alu 1 282 -30 686 137 27 0 chr15 71854333 71854479 -13841275 + (TA)n Simple_repeat Simple_repeat 1 150 0 204 111 0 0 chr15 71855151 71855187 -13840567 + (ATG)n Simple_repeat Simple_repeat 3 38 0 2582 265 83 46 chr15 71855993 71857338 -13838416 + L2 LINE L2 1919 3312 -1 11603 89 15 10 chr15 71859676 71861243 -13834511 - HERV9 LTR ERV1 -2068 6331 4756 * 13760 122 10 10 chr15 71861242 71864249 -13831505 - HERV9 LTR ERV1 -5427 2972 53 2917 127 31 11 chr15 71864225 71864706 -13831048 - LTR12 LTR ERV1 -231 483 57 * 365 48 0 0 chr15 71864707 71864749 -13831005 - LTR12 LTR ERV1 -620 94 53 270 231 0 0 chr15 71864749 71864801 -13830953 - LTR30 LTR ERV1 -670 52 1 790 294 7 7 chr15 71864801 71865087 -13830667 - L1M4 LINE L1 -2460 3686 3401 2683 228 107 7 chr15 71865097 71865976 -13829778 + L1 LINE L1 2269 3235 -2911 5585 190 30 22 chr15 71865980 71867105 -13828649 + L1PA16 LINE L1 12 1145 -6420 4968 191 47 7 chr15 71867115 71867760 -13827994 + L1PA16 LINE L1 5561 6179 -1406 2062 128 48 34 chr15 71867760 71868118 -13827636 - THE1B LTR MaLR 0 364 2 4968 191 47 7 chr15 71868118 71869324 -13826430 + L1PA16 LINE L1 6179 7480 -105 400 117 0 0 chr15 71869325 71869385 -13826369 + L1PA16 LINE L1 7517 7576 -9 2264 111 3 3 chr15 71869388 71869695 -13826059 + AluSx SINE Alu 1 307 -5 1885 175 123 3 chr15 71869703 71870086 -13825668 - MSTB1 LTR MaLR 0 432 4 7517 198 31 22 chr15 71870086 71871579 -13824175 - MSTB-int LTR MaLR 0 1651 146 4150 144 11 63 chr15 71871587 71871810 -13823944 + MER72 LTR ERV1 1 234 -488 2913 72 60 0 chr15 71871810 71872213 -13823541 - L1PA8 LINE L1 -10 6162 5736 4150 144 11 63 chr15 71872213 71872751 -13823003 + MER72 LTR ERV1 234 722 0 860 127 0 7 chr15 71872751 71872893 -13822861 - MSTB-int LTR MaLR -1510 141 1 1981 209 24 9 chr15 71872893 71873313 -13822441 - MSTB LTR MaLR 0 426 1 299 183 12 37 chr15 71874470 71874552 -13821202 + Charlie7 DNA MER1_type 32 111 -2501 23 54 0 0 chr15 71874616 71874653 -13821101 + AT_rich Low_complexity Low_complexity 1 37 0 1892 160 72 20 chr15 71874671 71875067 -13820687 - L1MA10 LINE L1 -1 6333 5757 279 289 23 70 chr15 71875910 71876038 -13819716 - MIR3 SINE MIR -86 122 1 268 293 87 65 chr15 71876810 71876828 -13818926 - MLT1L LTR MaLR -15 600 584 2099 186 11 6 chr15 71876828 71877188 -13818566 - MLT1A1 LTR MaLR -3 362 1 268 293 87 65 chr15 71877188 71877398 -13818356 - MLT1L LTR MaLR -31 584 367 819 249 121 14 chr15 71877788 71878202 -13817552 + MER113 DNA MER1_type? 11 468 -53 1234 150 33 33 chr15 71878423 71878663 -13817091 - Tigger2a DNA MER2_type -192 242 3 201 281 0 0 chr15 71879051 71879108 -13816646 + (CAGGG)n Simple_repeat Simple_repeat 2 58 0 310 235 127 86 chr15 71879440 71879708 -13816046 + MLT1L LTR MaLR 189 467 -148 293 319 65 6 chr15 71880099 71880268 -13815486 - MIR SINE MIR -12 250 72 244 276 53 0 chr15 71880747 71880823 -13814931 - MIR SINE MIR -14 248 169 456 283 25 0 chr15 71880846 71880966 -13814788 + MIR SINE MIR 20 142 -120 1283 254 15 4 chr15 71880972 71881236 -13814518 + Tigger7 DNA MER2_type 1 267 -466 557 192 0 10 chr15 71881242 71881346 -13814408 + Tigger7 DNA MER2_type 2385 2487 0 474 192 98 117 chr15 71883314 71883528 -13812226 + MER63A DNA MER1_type 1 210 0 2204 115 7 0 chr15 71884335 71884623 -13811131 - AluSg SINE Alu -20 290 1 826 224 50 10 chr15 71886566 71886767 -13808987 - MER3 DNA MER1_type 0 209 1 266 247 175 0 chr15 71887460 71887557 -13808197 + MIR SINE MIR 149 262 0 268 242 22 33 chr15 71888695 71888786 -13806968 + MIR SINE MIR 34 123 -139 1135 138 44 0 chr15 71889931 71890112 -13805642 + THE1B LTR MaLR 31 219 -145 1430 188 3 52 chr15 71890834 71891121 -13804633 - AluJo SINE Alu -37 275 3 982 193 99 31 chr15 71891137 71891257 -13804497 + MER8 DNA MER2_type 2 112 -127 2106 142 74 0 chr15 71891257 71891596 -13804158 + THE1B LTR MaLR 1 364 0 982 193 99 31 chr15 71891596 71891698 -13804056 + MER8 DNA MER2_type 112 239 0 367 307 37 23 chr15 71891737 71891952 -13803802 - L1M4 LINE L1 -1428 4718 4501 22 0 0 0 chr15 71892406 71892428 -13803326 + AT_rich Low_complexity Low_complexity 1 22 0 437 295 20 7 chr15 71893918 71894067 -13801687 - MIR SINE MIR -11 251 101 220 314 87 52 chr15 71895889 71896061 -13799693 - MIR SINE MIR -34 228 51 1615 152 82 61 chr15 71896085 71896414 -13799340 - MER1B DNA MER1_type 0 337 2 431 322 73 17 chr15 71899223 71899400 -13796354 - MIR SINE MIR -55 207 21 400 270 92 37 chr15 71901403 71901566 -13794188 + MIR SINE MIR 12 183 -79 805 257 69 0 chr15 71902695 71902897 -13792857 + MIR SINE MIR 47 262 0 856 212 81 0 chr15 71903418 71903616 -13792138 + MER58A DNA MER1_type 1 214 -10 215 306 86 119 chr15 71903632 71903968 -13791786 + L2 LINE L2 2947 3271 -1 225 250 104 73 chr15 71904700 71904796 -13790958 - MLT1E LTR MaLR -313 280 182 192 257 114 19 chr15 71904892 71904997 -13790757 - L3b LINE CR1 -216 1367 1253 263 0 81 0 chr15 71905890 71905927 -13789827 + A-rich Low_complexity Low_complexity 2 41 0 27 0 0 0 chr15 71908402 71908429 -13787325 + AT_rich Low_complexity Low_complexity 1 27 0 180 182 0 0 chr15 71908695 71908739 -13787015 + (TG)n Simple_repeat Simple_repeat 2 45 0 641 271 42 26 chr15 71909325 71909517 -13786237 + MIR SINE MIR 14 208 -54 1986 123 0 29 chr15 71909525 71909835 -13785919 + AluSx SINE Alu 6 306 -6 245 266 211 8 chr15 71910567 71910695 -13785059 + MER5B DNA MER1_type 6 159 -19 811 141 16 0 chr15 71912274 71912402 -13783352 + FRAM SINE Alu 35 164 -12 2321 78 0 0 chr15 71912472 71912765 -13782989 - AluSc SINE Alu -16 293 1 300 266 51 0 chr15 71912796 71912875 -13782879 + MIR SINE MIR 89 171 -91 274 306 171 26 chr15 71913998 71914191 -13781563 + MIR SINE MIR 36 256 -6 832 125 8 0 chr15 71914349 71914477 -13781277 + AluSg/x SINE Alu 171 299 -13 219 298 107 12 chr15 71915444 71915528 -13780226 - MIR SINE MIR -140 122 31 184 269 0 19 chr15 71915621 71915673 -13780081 + L2 LINE L2 3220 3270 -2 449 193 286 6 chr15 71917450 71917611 -13778143 - MER3 DNA MER1_type -3 206 1 192 302 239 6 chr15 71917794 71917953 -13777801 + L2 LINE L2 2543 2738 -576 276 175 0 79 chr15 71917953 71918016 -13777738 - AluSg/x SINE Alu -85 215 171 622 257 30 68 chr15 71918563 71918828 -13776926 - MER112 DNA MER1_type 0 256 2 284 221 57 41 chr15 71919585 71919707 -13776047 + MER117 DNA MER1_type 72 195 -2 233 323 20 10 chr15 71920004 71920103 -13775651 - L1MC/D LINE L1 -2028 5780 5681 2194 98 20 13 chr15 71921545 71921851 -13773903 + MLT2A2 LTR ERVL 1 308 -145 206 333 15 0 chr15 71922346 71922412 -13773342 + MIR SINE MIR 48 114 -148 468 299 94 64 chr15 71923081 71923473 -13772281 - L1MC/D LINE L1 -320 5801 5440 1700 137 32 14 chr15 71923757 71924035 -13771719 - AluSx SINE Alu -29 283 1 214 289 165 58 chr15 71926589 71927122 -13768632 + L2 LINE L2 1684 2273 -1041 2975 177 24 2 chr15 71927303 71927840 -13767914 + MER34C LTR ERV1 37 585 0 282 272 172 28 chr15 71927840 71928130 -13767624 + MLT2E LTR ERVL 125 456 -172 192 77 0 0 chr15 71928201 71928227 -13767527 + (CCCCAG)n Simple_repeat Simple_repeat 4 29 0 232 75 100 0 chr15 71928276 71928316 -13767438 - MADE1 DNA Mariner -36 44 1 201 262 151 48 chr15 71928362 71928473 -13767281 + L2 LINE L2 3133 3260 -12 191 36 36 0 chr15 71928473 71928501 -13767253 + (TA)n Simple_repeat Simple_repeat 2 30 0 201 262 151 48 chr15 71928501 71928515 -13767239 + L2 LINE L2 3260 3271 -1 1800 201 20 22 chr15 71929241 71929599 -13766155 + MLT1A1 LTR MaLR 6 362 -3 316 287 114 53 chr15 71930838 71930986 -13764768 + L1MC4a LINE L1 5633 5771 -2037 26485 28 0 0 chr15 71930986 71934883 -13760871 + L1PA2 LINE L1 2261 6155 0 316 287 114 53 chr15 71934883 71935263 -13760491 + L1MC4a LINE L1 5771 6240 -1568 532 200 122 0 chr15 71935721 71935836 -13759918 - AluJo/FRAM SINE Alu -6 306 178 642 199 8 15 chr15 71935837 71935968 -13759786 - FLAM_A SINE Alu -3 130 1 514 320 61 12 chr15 71937108 71937355 -13758399 - L1ME4a LINE L1 -5 6116 5858 223 311 0 16 chr15 71937445 71937506 -13758248 + L2 LINE L2 3189 3248 -24 439 238 29 95 chr15 71937628 71937838 -13757916 - MER102a DNA MER1_type -3 327 132 3385 124 27 25 chr15 71937923 71938449 -13757305 - MER1A DNA MER1_type 0 527 1 938 219 14 14 chr15 71938614 71938833 -13756921 + MER20 DNA MER1_type 1 219 0 534 279 55 0 chr15 71938841 71939006 -13756748 + MER5B DNA MER1_type 1 174 -4 209 265 120 77 chr15 71939010 71939127 -13756627 + L2 LINE L2 3148 3269 -3 240 282 97 112 chr15 71939848 71940207 -13755547 - L2 LINE L2 -57 3215 2861 2061 96 0 11 chr15 71940207 71940489 -13755265 + AluSx SINE Alu 22 300 -12 240 282 97 112 chr15 71940489 71940540 -13755214 - L2 LINE L2 -411 2861 2811 392 253 185 7 chr15 71940665 71940811 -13754943 + MIR SINE MIR 29 200 -62 216 0 0 0 chr15 71940944 71940968 -13754786 + (T)n Simple_repeat Simple_repeat 1 24 0 221 333 53 0 chr15 71942592 71942706 -13753048 - L2 LINE L2 -605 2709 2590 369 250 12 12 chr15 71942993 71943077 -13752677 - L3 LINE CR1 -89 1488 1405 518 308 151 0 chr15 71944304 71944489 -13751265 - MIR SINE MIR -30 232 20 606 285 150 52 chr15 71946866 71947326 -13748428 + L2 LINE L2 2807 3311 -2 253 241 48 48 chr15 71947601 71947684 -13748070 - L3b LINE CR1 -385 1198 1116 2020 102 61 0 chr15 71948407 71948700 -13747054 - AluSq SINE Alu -2 311 1 2696 249 81 7 chr15 71948709 71949448 -13746306 - L1ME3 LINE L1 -1 6161 5368 185 258 97 0 chr15 71949488 71949550 -13746204 + L2 LINE L2 1349 1416 -1898 361 322 159 42 chr15 71949659 71950460 -13745294 + L2 LINE L2 1585 2478 -836 483 318 7 0 chr15 71950649 71950803 -13744951 + MER117 DNA MER1_type 9 163 -34 211 289 124 10 chr15 71951059 71951156 -13744598 + L2 LINE L2 3154 3261 -11 234 310 9 9 chr15 71951746 71951859 -13743895 + (TATATG)n Simple_repeat Simple_repeat 5 117 0 649 281 119 43 chr15 71951896 71952372 -13743382 + L2 LINE L2 2526 3050 -263 345 210 0 50 chr15 71952883 71952983 -13742771 - MER113 DNA MER1_type? -420 101 7 588 294 111 4 chr15 71955593 71955828 -13739926 - MIR SINE MIR -1 261 2 204 125 0 0 chr15 71955911 71955943 -13739811 + (TAA)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr15 71956004 71956031 -13739723 + (T)n Simple_repeat Simple_repeat 1 27 0 213 299 19 65 chr15 71956249 71956356 -13739398 + MIR SINE MIR 159 260 -2 387 268 21 67 chr15 71956895 71957061 -13738693 - MIR SINE MIR -45 163 5 312 296 30 30 chr15 71957839 71957971 -13737783 + MER5A DNA MER1_type 40 171 -18 278 242 42 21 chr15 71959056 71959151 -13736603 + MER103 DNA DNA 59 155 -11 324 291 29 22 chr15 71959286 71959438 -13736316 + MER5B DNA MER1_type 23 186 -3 215 323 0 0 chr15 71960063 71960125 -13735629 - L2 LINE L2 0 3272 3211 359 310 270 6 chr15 71961085 71961430 -13734324 - L2 LINE L2 -23 3249 2814 196 202 182 40 chr15 71961886 71961985 -13733769 + MIR SINE MIR 20 132 -76 233 316 25 13 chr15 71962562 71962641 -13733113 + MIR SINE MIR 2 81 -181 316 314 131 58 chr15 71962789 71963149 -13732605 - L2 LINE L2 0 3272 2887 282 346 20 10 chr15 71963866 71963967 -13731787 + MIR SINE MIR 119 220 -42 * 283 298 75 11 chr15 71963944 71964038 -13731716 - MIR SINE MIR -127 135 36 1862 113 3 33 chr15 71966567 71966869 -13728885 - AluSx SINE Alu -17 295 3 705 257 92 19 chr15 71968048 71968254 -13727500 + MIR SINE MIR 11 231 -31 198 0 0 0 chr15 71968314 71968336 -13727418 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 572 301 98 17 chr15 71968792 71969028 -13726726 - MIR SINE MIR -6 256 2 559 254 67 7 chr15 71969243 71969398 -13726356 + MIR SINE MIR 20 184 -62 2169 104 3 0 chr15 71970334 71970631 -13725123 - AluSx SINE Alu -14 298 1 372 291 48 30 chr15 71970813 71970978 -13724776 + MLT1I LTR MaLR 41 208 -201 629 231 16 0 chr15 71971012 71971133 -13724621 + MLT1I LTR MaLR 287 409 0 2136 112 3 13 chr15 71971761 71972073 -13723681 - AluSq SINE Alu -4 309 1 250 240 230 10 chr15 71972853 71972953 -13722801 + MIR SINE MIR 17 138 -124 * 430 274 51 8 chr15 71972952 71973145 -13722609 - MIR SINE MIR -10 252 2 212 288 0 41 chr15 71973152 71973225 -13722529 + MIR SINE MIR 147 216 -46 187 378 24 0 chr15 71974328 71974410 -13721344 - L2 LINE L2 -254 3018 2935 512 214 0 10 chr15 71974582 71974685 -13721069 + MIR3 SINE MIR 92 193 -15 1066 221 141 86 chr15 71975388 71975900 -13719854 + MLT1F LTR MaLR 3 542 0 410 259 0 0 chr15 71975900 71975981 -13719773 + MLT1I LTR MaLR 101 181 -228 500 257 0 0 chr15 71976131 71976236 -13719518 + MLT1I LTR MaLR 293 397 -12 261 346 94 45 chr15 71976519 71976721 -13719033 - MIR SINE MIR -31 231 20 459 235 0 42 chr15 71978096 71978215 -13717539 - L2 LINE L2 0 3313 3200 2665 149 26 2 chr15 71978317 71978733 -13717021 + MSTB LTR MaLR 1 426 0 247 263 120 38 chr15 71980781 71980914 -13714840 + L2 LINE L2 3150 3293 -20 181 362 60 26 chr15 71981572 71981688 -13714066 - MIR SINE MIR -51 211 92 * 277 248 148 10 chr15 71981687 71981788 -13713966 - L2 LINE L2 0 3272 3158 407 282 87 31 chr15 71982927 71983250 -13712504 + L1MEd LINE L1 1212 1552 -4864 242 326 15 0 chr15 71983271 71983406 -13712348 + L1MEd LINE L1 1432 1568 -4858 1197 162 33 48 chr15 71983461 71983731 -13712023 + MER33 DNA MER1_type 1 254 -70 263 344 10 42 chr15 71983903 71983999 -13711755 + L2 LINE L2 3133 3225 -47 224 355 29 43 chr15 71984013 71984151 -13711603 + MIR SINE MIR 5 140 -122 1666 248 57 21 chr15 71984228 71984752 -13711002 - MER74B LTR ERVL -2 620 78 2079 105 0 3 chr15 71985081 71985538 -13710216 + AluSx SINE Alu 1 456 0 186 43 0 0 chr15 71985537 71985560 -13710194 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 45 93 0 0 chr15 71985705 71985834 -13709920 + GC_rich Low_complexity Low_complexity 1 129 0 64 81 0 0 chr15 71986144 71986292 -13709462 + GC_rich Low_complexity Low_complexity 1 148 0 25 65 0 0 chr15 71986379 71986425 -13709329 + GC_rich Low_complexity Low_complexity 1 46 0 234 159 11 57 chr15 71986428 71986516 -13709238 + (CCCG)n Simple_repeat Simple_repeat 2 85 0 695 139 0 14 chr15 71986639 71986783 -13708971 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 281 270 32 63 chr15 71986788 71986914 -13708840 - MLT1K LTR MaLR -13 575 454 238 254 0 17 chr15 71987028 71987087 -13708667 - MLT1K LTR MaLR -343 245 188 2253 83 0 0 chr15 71987228 71987518 -13708236 + AluY SINE Alu 1 290 -21 404 228 197 8 chr15 71987830 71987957 -13707797 - MIR3 SINE MIR -6 202 52 4255 63 4 2 chr15 71988743 71989267 -13706487 + LTR17 LTR ERV1 256 780 0 4113 65 0 0 chr15 71989267 71989758 -13705996 + HERV17 LTR ERV1 2 492 -8134 21 36 0 0 chr15 71989806 71989834 -13705920 + AT_rich Low_complexity Low_complexity 1 28 0 12743 93 2 20 chr15 71989997 71991773 -13703981 + HERV9 LTR ERV1 6656 8399 0 286 211 0 0 chr15 71991773 71991825 -13703929 + LTR30 LTR ERV1 1 52 -670 1369 106 127 77 chr15 71991825 71992160 -13703594 + LTR12 LTR ERV1 57 2006 -432 353 274 17 0 chr15 71992160 71992277 -13703477 + LTR30 LTR ERV1 524 642 -80 355 68 0 0 chr15 71992279 71992323 -13703431 + LTR12 LTR ERV1 481 524 -190 4857 238 58 17 chr15 71992323 71994190 -13701564 + L1ME LINE L1 3631 5573 -593 1046 258 72 12 chr15 71994459 71994862 -13700892 + L1ME4a LINE L1 5531 5957 -164 28 71 0 0 chr15 71995004 71995060 -13700694 + AT_rich Low_complexity Low_complexity 1 56 0 573 276 149 54 chr15 71995961 71996458 -13699296 + L1MCc LINE L1 19 562 -5861 441 154 0 26 chr15 71996646 71996724 -13699030 + L1MCc LINE L1 1187 1262 -5161 1187 61 7 7 chr15 71996727 71996874 -13698880 - AluSp/q SINE Alu -11 302 156 856 234 61 18 chr15 71996876 71997273 -13698481 + L1MCc LINE L1 1279 1694 -4890 2244 89 13 13 chr15 71997786 71998089 -13697665 - AluY SINE Alu -8 303 1 5694 145 86 51 chr15 71999016 72000102 -13695652 + Tigger3b DNA MER2_type 2 1134 -1894 1975 121 7 4 chr15 72000102 72000382 -13695372 - AluSx SINE Alu -31 281 1 5694 145 86 51 chr15 72000382 72000484 -13695270 + Tigger3b DNA MER2_type 1134 1231 0 1054 278 78 28 chr15 72000824 72001322 -13694432 - MLT1G3 LTR MaLR 0 555 2 368 317 103 41 chr15 72001324 72001643 -13694111 - MLT1G3-int LTR MaLR -1 1370 1032 1041 208 26 35 chr15 72001747 72001768 -13693986 - MLT1F1 LTR MaLR -2 565 545 1777 151 75 28 chr15 72001768 72002126 -13693628 - THE1C LTR MaLR 0 375 1 1041 208 26 35 chr15 72002126 72002330 -13693424 - MLT1F1 LTR MaLR -22 545 342 845 260 108 22 chr15 72002450 72002719 -13693035 - MLT1F1 LTR MaLR -225 317 26 1291 204 12 116 chr15 72004736 72005142 -13690612 + MLT1A1 LTR MaLR 2 365 0 346 163 102 4 chr15 72005380 72005462 -13690292 + L1PA15 LINE L1 6073 6165 0 23 0 0 0 chr15 72005705 72005728 -13690026 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr15 72005754 72005783 -13689971 + (T)n Simple_repeat Simple_repeat 1 29 0 1398 218 92 71 chr15 72006274 72006783 -13688971 - MLT2B1 LTR ERVL 0 520 1 320 243 14 0 chr15 72008261 72008335 -13687419 + MER116 DNA Mariner 1 75 -5 2331 204 55 4 chr15 72008541 72009036 -13686718 + L1MB8 LINE L1 5443 5962 -216 342 244 77 0 chr15 72009038 72009116 -13686638 + MER44D DNA MER2_type 1 84 -621 1751 159 40 3 chr15 72009216 72009512 -13686242 + MER44D DNA MER2_type 235 596 -9 463 204 8 45 chr15 72009532 72009664 -13686090 + L1MB8 LINE L1 5964 6090 -88 371 219 31 0 chr15 72010040 72010136 -13685618 + L1P5 LINE L1 -564 4294966830 -6670 6221 171 50 20 chr15 72010163 72012925 -13682829 + L1P5 LINE L1 1 2429 -3774 4236 156 41 66 chr15 72012928 72013856 -13681898 + HUERS-P1 LTR ERV1 4815 5719 -544 2169 172 0 34 chr15 72013845 72014258 -13681496 + HUERS-P1 LTR ERV1 5861 6259 -4 * 3227 153 25 60 chr15 72014262 72014864 -13680890 + LTR8 LTR ERV1 1 581 -110 12643 194 35 14 chr15 72014870 72018097 -13677657 + L1P5 LINE L1 2433 5721 -490 1900 170 8 64 chr15 72018471 72018859 -13676895 + MER47A DNA MER2_type 1 366 0 339 343 22 0 chr15 72019004 72019138 -13676616 - MIR SINE MIR -15 247 111 780 127 299 0 chr15 72019186 72019343 -13676411 - MER20 DNA MER1_type -15 204 1 253 299 0 0 chr15 72020792 72020859 -13674895 - L2 LINE L2 0 3313 3247 1438 209 42 37 chr15 72021814 72022215 -13673539 - L1 LINE L1 -757 5389 4987 7708 29 4 1 chr15 72022220 72023119 -13672635 - L1PA3 LINE L1 0 6155 5254 17621 36 3 1 chr15 72023124 72025232 -13670522 + L1PA3 LINE L1 3132 5244 -902 2168 141 6 96 chr15 72025231 72025719 -13670035 - L1 LINE L1 -1158 4988 4545 * 1723 233 49 16 chr15 72027274 72027724 -13668030 - MLT1C LTR MaLR -2 465 1 227 326 70 12 chr15 72028998 72029084 -13666670 + MIR3 SINE MIR 15 105 -103 660 287 21 44 chr15 72030406 72030758 -13664996 + MLT1I LTR MaLR 8 398 -11 668 293 84 0 chr15 72031723 72031938 -13663816 + MIR SINE MIR 8 240 -22 248 291 60 20 chr15 72031951 72032102 -13663652 - MLT1J LTR MaLR -352 159 3 513 231 144 12 chr15 72032323 72032496 -13663258 - MIR SINE MIR 0 262 67 214 346 45 19 chr15 72034392 72034548 -13661206 + L2 LINE L2 2945 3104 -168 592 216 28 72 chr15 72034740 72034921 -13660833 + MER5B DNA MER1_type 1 173 -5 201 197 180 0 chr15 72034977 72035038 -13660716 + L2 LINE L2 3242 3313 0 548 165 0 8 chr15 72035572 72035622 -13660132 + CT-rich Low_complexity Low_complexity 4 53 -70 1902 157 0 22 chr15 72035622 72035940 -13659814 - AluJo SINE Alu -1 311 1 548 165 0 8 chr15 72035940 72036010 -13659744 + CT-rich Low_complexity Low_complexity 53 123 0 2022 167 3 9 chr15 72037045 72037375 -13658379 + MLT1A1 LTR MaLR 34 361 -4 2415 77 3 0 chr15 72037883 72038181 -13657573 + AluY SINE Alu 1 299 -12 351 262 21 48 chr15 72039122 72039267 -13656487 + LTR33 LTR ERVL 13 153 -368 521 237 132 43 chr15 72039307 72039564 -13656190 + LTR33 LTR ERVL 242 521 0 495 316 23 32 chr15 72039695 72039981 -13655773 - L1ME3A LINE L1 -263 5899 5618 238 223 112 48 chr15 72040113 72040279 -13655475 - L1P4 LINE L1 -734 5431 5256 * 314 270 9 0 chr15 72040269 72040380 -13655374 - L1ME3A LINE L1 -2368 3778 3667 253 229 157 0 chr15 72040418 72040488 -13655266 + L2 LINE L2 2541 2621 -693 189 339 74 8 chr15 72040684 72040805 -13654949 + MIR SINE MIR 61 189 -73 1088 178 9 37 chr15 72041754 72041968 -13653786 - MER20 DNA MER1_type -10 209 2 531 277 178 27 chr15 72042112 72042523 -13653231 - L2 LINE L2 -24 3289 2817 276 149 0 0 chr15 72042655 72042702 -13653052 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1871 143 18 4 chr15 72042711 72042990 -13652764 - AluJo SINE Alu -29 283 1 765 288 134 5 chr15 72042995 72043384 -13652370 + L2 LINE L2 965 1403 -1911 200 256 0 61 chr15 72043448 72043530 -13652224 + L2 LINE L2 3237 3313 0 739 296 125 30 chr15 72043530 72043969 -13651785 - L2 LINE L2 -572 2742 2262 247 264 68 54 chr15 72043982 72044130 -13651624 - MLT1I LTR MaLR -90 319 170 275 300 38 99 chr15 72044290 72044553 -13651201 - MIR SINE MIR -1 261 15 2225 193 45 16 chr15 72044923 72045410 -13650344 - MLT1D LTR MaLR 0 505 5 220 279 48 67 chr15 72047219 72047323 -13648431 - L2 LINE L2 0 3272 3171 529 259 40 10 chr15 72047503 72047752 -13648002 + MER115 DNA AcHobo 18 304 -389 351 246 9 44 chr15 72048002 72048116 -13647638 + MLT1K LTR MaLR 468 577 -11 201 364 45 56 chr15 72048116 72048314 -13647440 + MIR SINE MIR 55 250 -12 2220 147 17 149 chr15 72048336 72048860 -13646894 + LTR32 LTR ERVL 17 471 0 449 280 51 70 chr15 72049204 72049418 -13646336 - MLT1J LTR MaLR -78 433 224 1927 121 0 20 chr15 72049496 72049793 -13645961 + AluSx SINE Alu 1 291 -21 228 289 0 0 chr15 72049794 72049839 -13645915 - MLT1J1 LTR MaLR -321 125 81 965 154 22 44 chr15 72050062 72050244 -13645510 - MER5A DNA MER1_type -10 179 2 344 294 48 16 chr15 72050948 72051074 -13644680 - MER91A DNA MER1_type -66 130 1 265 324 140 0 chr15 72051086 72051222 -13644532 + MIR SINE MIR 102 256 -6 349 323 86 80 chr15 72051946 72052284 -13643470 - L2 LINE L2 -5 3267 2928 328 211 0 42 chr15 72053283 72053354 -13642400 + MER21B LTR ERV1 1 68 -795 483 181 0 0 chr15 72053386 72053458 -13642296 + MER21B LTR ERV1 18 89 -774 1772 187 47 19 chr15 72053461 72053831 -13641923 + MER21B LTR ERV1 43 502 -429 213 321 138 44 chr15 72053833 72053992 -13641762 - L2 LINE L2 -1230 2084 1911 186 171 0 0 chr15 72055739 72055780 -13639974 + CT-rich Low_complexity Low_complexity 5 45 0 310 293 191 11 chr15 72055991 72056179 -13639575 - MIR SINE MIR -36 226 5 217 217 0 65 chr15 72056671 72056717 -13639037 + L2 LINE L2 3217 3259 -13 373 359 39 22 chr15 72057076 72057257 -13638497 - MIR SINE MIR -70 192 9 602 312 80 5 chr15 72058090 72058289 -13637465 + MIR SINE MIR 1 214 -48 838 235 64 0 chr15 72058935 72059122 -13636632 + MER63A DNA MER1_type 1 199 -11 719 265 36 5 chr15 72059132 72059328 -13636426 - MIR SINE MIR -56 206 5 324 208 28 0 chr15 72059979 72060051 -13635703 - MER103 DNA DNA -11 155 82 480 291 74 21 chr15 72060287 72060476 -13635278 + MIR SINE MIR 36 234 -28 1034 99 78 52 chr15 72060487 72060678 -13635076 + THE1C LTR MaLR 178 373 -2 9796 116 77 10 chr15 72060679 72062160 -13633594 + THE1C-int LTR MaLR 1 1580 0 1952 154 65 20 chr15 72062163 72062519 -13633235 + THE1C LTR MaLR 4 375 0 359 290 97 21 chr15 72063452 72063597 -13632157 + MIR3 SINE MIR 32 187 -21 304 268 30 89 chr15 72064145 72064414 -13631340 + MER31-int LTR ERV1 1041 1293 -3643 341 279 105 33 chr15 72064818 72065209 -13630545 + MER31-int LTR ERV1 1698 2116 -2820 1823 148 35 67 chr15 72065212 72065254 -13630500 - THE1B LTR MaLR 0 364 322 2026 85 3 20 chr15 72065254 72065586 -13630168 + AluY SINE Alu 1 311 0 1823 148 35 67 chr15 72065586 72065916 -13629838 - THE1B LTR MaLR -42 322 4 341 215 11 0 chr15 72067047 72067140 -13628614 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 787 206 77 0 chr15 72067143 72067313 -13628441 - MLT2F LTR ERVL -60 603 421 771 214 157 58 chr15 72068078 72068423 -13627331 + LTR40c LTR ERVL 1 379 -86 216 0 0 0 chr15 72068603 72068627 -13627127 + (A)n Simple_repeat Simple_repeat 1 24 0 2140 116 0 0 chr15 72069551 72069845 -13625909 + AluSx SINE Alu 1 294 -18 513 296 52 56 chr15 72069845 72069996 -13625758 - MIR SINE MIR -24 238 87 2622 149 12 7 chr15 72069996 72070424 -13625330 + MSTB1 LTR MaLR 3 432 0 513 296 52 56 chr15 72070424 72070505 -13625249 - MIR SINE MIR -175 87 7 523 258 37 2 chr15 72072841 72073001 -13622753 - MER5B DNA MER1_type -1 177 24 214 200 164 18 chr15 72073407 72073462 -13622292 - MIR3 SINE MIR -6 202 140 563 228 20 91 chr15 72073649 72073846 -13621908 - MER5A DNA MER1_type -6 183 1 516 185 42 76 chr15 72073914 72073983 -13621771 + MER5B DNA MER1_type 3 68 -110 2105 167 19 3 chr15 72073983 72074342 -13621412 - MLT1A1 LTR MaLR 0 365 1 516 185 42 76 chr15 72074342 72074391 -13621363 + MER5B DNA MER1_type 68 117 -61 376 99 45 119 chr15 72074393 72074503 -13621251 - MLT1H LTR MaLR 0 610 375 235 296 136 12 chr15 72074667 72074748 -13621006 - MLT1I LTR MaLR -238 171 81 353 237 175 10 chr15 72074790 72074887 -13620867 + MER5B DNA MER1_type 65 177 -1 255 299 12 78 chr15 72075056 72075223 -13620531 - L3 LINE CR1 -302 1275 1120 338 224 112 56 chr15 72075469 72075594 -13620160 + MIR3 SINE MIR 60 191 -17 467 288 120 54 chr15 72076008 72076189 -13619565 + L2 LINE L2 2781 2949 -364 479 254 27 0 chr15 72076189 72076299 -13619455 - MER81 DNA DNA 0 114 2 467 288 120 54 chr15 72076299 72076439 -13619315 + L2 LINE L2 2949 3078 -235 1840 104 8 4 chr15 72076439 72076707 -13619047 + AluSx SINE Alu 30 298 -14 467 288 120 54 chr15 72076707 72076870 -13618884 + L2 LINE L2 3078 3298 -15 2142 107 3 3 chr15 72077112 72077421 -13618333 - AluSg SINE Alu -1 309 1 311 264 222 21 chr15 72077601 72077745 -13618009 - MIR SINE MIR -70 192 20 1372 216 81 34 chr15 72079000 72079357 -13616397 - MLT1A2 LTR MaLR 0 374 1 292 287 138 40 chr15 72079358 72079497 -13616257 + MIR SINE MIR 61 222 -40 2077 145 35 30 chr15 72079497 72079870 -13615884 + THE1C LTR MaLR 1 375 0 292 287 138 40 chr15 72079870 72079904 -13615850 + MIR SINE MIR 222 251 -11 253 316 187 0 chr15 72081115 72081302 -13614452 + L1MC/D LINE L1 5435 5656 -2152 282 365 29 6 chr15 72081326 72081496 -13614258 + L2 LINE L2 1182 1355 -1959 336 243 237 40 chr15 72081735 72081887 -13613867 + MER5A DNA MER1_type 2 183 -6 375 214 26 60 chr15 72082178 72082295 -13613459 - MLT2F LTR ERVL -523 140 28 820 278 106 53 chr15 72082383 72082948 -13612806 - L2 LINE L2 -972 2342 1748 293 219 50 51 chr15 72082974 72083101 -13612653 - MIR SINE MIR -73 135 10 1560 176 3 24 chr15 72083855 72084151 -13611603 + AluJo SINE Alu 1 290 -22 959 270 110 3 chr15 72084295 72084632 -13611122 + LTR16A LTR ERVL 1 373 -77 3481 270 91 39 chr15 72084673 72085946 -13609808 + HERV16 LTR ERVL 2 1341 -3655 324 212 127 51 chr15 72085946 72086064 -13609690 + LTR16A LTR ERVL 319 445 -5 1473 274 90 42 chr15 72086397 72086962 -13608792 - MLT1E LTR MaLR -1 592 1 597 268 32 35 chr15 72087043 72087300 -13608454 - L1ME4a LINE L1 -296 5825 5594 285 263 26 0 chr15 72087501 72087577 -13608177 - L1ME4a LINE L1 -521 5600 5523 313 93 0 19 chr15 72087700 72087754 -13608000 - HSMAR2 DNA Mariner -1 1301 1249 1492 156 61 34 chr15 72088074 72088208 -13607546 - L1MA9 LINE L1 -5 6307 6178 1876 127 0 23 chr15 72088208 72088508 -13607246 - AluSx SINE Alu -19 293 1 1492 156 61 34 chr15 72088508 72088699 -13607055 - L1MA9 LINE L1 -134 6178 5973 256 160 40 0 chr15 72088845 72088895 -13606859 - MER20 DNA MER1_type 0 219 168 187 222 152 61 chr15 72089256 72089286 -13606468 + L2 LINE L2 3145 3171 -101 2161 192 88 40 chr15 72089286 72089817 -13605937 + MER74A LTR ERVL 2 558 0 187 222 152 61 chr15 72089817 72089885 -13605869 + L2 LINE L2 3171 3252 -20 1984 91 8 0 chr15 72090438 72090701 -13605053 + AluSx SINE Alu 36 300 -12 300 161 0 0 chr15 72090930 72090992 -13604762 - L1MA7 LINE L1 -5 6286 6225 250 121 0 103 chr15 72091436 72091481 -13604273 - L1MB2 LINE L1 0 6171 6132 984 199 57 116 chr15 72091481 72091869 -13603885 + MLT1A1 LTR MaLR 1 365 0 250 121 0 103 chr15 72091869 72091881 -13603873 - L1MB2 LINE L1 -39 6132 6120 867 172 26 0 chr15 72091881 72092032 -13603722 - AluSg/x SINE Alu -21 289 135 1306 203 67 13 chr15 72092032 72092332 -13603422 - L1MB4 LINE L1 -38 6142 5827 1001 186 36 61 chr15 72093174 72093454 -13602300 - MER58D DNA MER1_type -3 383 111 587 274 66 46 chr15 72093617 72093858 -13601896 + MIR SINE MIR 17 262 0 2107 117 0 3 chr15 72095145 72095454 -13600300 + AluSc SINE Alu 1 308 -1 187 316 160 40 chr15 72095961 72096186 -13599568 + L2 LINE L2 1749 2000 -1314 1691 151 3 29 chr15 72096819 72097130 -13598624 - AluJb SINE Alu -9 303 1 360 241 11 11 chr15 72097158 72097245 -13598509 - MIR SINE MIR -122 140 54 188 298 18 0 chr15 72097531 72097588 -13598166 - L2 LINE L2 -21 3251 3194 241 276 61 98 chr15 72099350 72099500 -13596254 + L2 LINE L2 2850 2991 -281 508 259 73 116 chr15 72099500 72099855 -13595899 + MER102b DNA MER1_type 1 340 -1 241 276 61 98 chr15 72099855 72099918 -13595836 + L2 LINE L2 2991 3055 -217 228 291 164 30 chr15 72100677 72100811 -13594943 - MIR SINE MIR -62 200 49 220 294 71 56 chr15 72102114 72102240 -13593514 - L2 LINE L2 -21 3292 3165 2215 125 3 3 chr15 72102343 72102655 -13593099 + AluSx SINE Alu 1 312 0 307 319 37 31 chr15 72102698 72102861 -13592893 - L2 LINE L2 -211 3061 2898 21 0 0 0 chr15 72103064 72103085 -13592669 + AT_rich Low_complexity Low_complexity 1 21 0 236 307 137 38 chr15 72103324 72103536 -13592218 + L2 LINE L2 2036 2268 -1046 308 229 0 29 chr15 72103576 72103646 -13592108 + MIR SINE MIR 86 153 -55 192 289 0 39 chr15 72104890 72104942 -13590812 + L2 LINE L2 3210 3259 -13 342 317 78 7 chr15 72105152 72105294 -13590460 - MIR3 SINE MIR -23 185 34 321 274 96 20 chr15 72105652 72105798 -13589956 - L2 LINE L2 -7 3306 3150 2259 104 0 0 chr15 72106291 72106597 -13589157 + AluSg SINE Alu 1 306 0 23 0 0 0 chr15 72107796 72107819 -13587935 + AT_rich Low_complexity Low_complexity 1 23 0 272 231 26 26 chr15 72107958 72108036 -13587718 - MIR3 SINE MIR -7 201 124 440 335 86 25 chr15 72109850 72110095 -13585659 + MIR SINE MIR 3 262 0 438 287 20 47 chr15 72110286 72110436 -13585318 - MIR3 SINE MIR -12 196 51 275 257 10 79 chr15 72111028 72111129 -13584625 - MIR3 SINE MIR -34 174 81 2175 126 7 0 chr15 72111437 72111738 -13584016 + AluSx SINE Alu 1 303 -9 319 212 71 12 chr15 72112209 72112294 -13583460 - MLT1G LTR MaLR -500 90 1 869 292 231 10 chr15 72112294 72112701 -13583053 - L2 LINE L2 -5 3308 2812 323 167 15 0 chr15 72112701 72112767 -13582987 + GA-rich Low_complexity Low_complexity 3 69 0 7679 128 30 4 chr15 72112767 72114012 -13581742 - HSMAR2 DNA Mariner -23 1279 2 199 176 98 20 chr15 72118160 72118211 -13577543 - L2 LINE L2 -837 2477 2423 243 249 60 54 chr15 72118418 72118603 -13577151 - L1ME4a LINE L1 -3 6118 5933 536 299 123 5 chr15 72118603 72118805 -13576949 - MIR SINE MIR -20 242 17 652 321 64 22 chr15 72118805 72119116 -13576638 + MER5C DNA MER1_type 1 324 0 758 296 134 47 chr15 72119376 72119846 -13575908 + MLT1J LTR MaLR 1 511 0 1091 219 14 28 chr15 72120232 72120515 -13575239 - MER63 DNA MER1_type -70 990 712 346 279 67 10 chr15 72120653 72120757 -13574997 + MIR SINE MIR 33 142 -66 383 354 8 8 chr15 72120757 72120884 -13574870 + L2 LINE L2 3146 3272 0 192 40 0 0 chr15 72121244 72121269 -13574485 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 369 279 125 0 chr15 72122085 72122221 -13573533 + MIR SINE MIR 104 256 -6 377 205 111 60 chr15 72123603 72123720 -13572034 + L2 LINE L2 3134 3256 -16 200 182 0 0 chr15 72125186 72125219 -13570535 + C-rich Low_complexity Low_complexity 3 35 0 207 204 0 37 chr15 72125616 72125670 -13570084 + G-rich Low_complexity Low_complexity 3 54 0 204 125 0 0 chr15 72125707 72125739 -13570015 + (CCG)n Simple_repeat Simple_repeat 1 32 0 2404 82 16 0 chr15 72128248 72128589 -13567165 - AluSx SINE Alu 0 347 2 262 303 114 30 chr15 72129453 72129585 -13566169 + L2 LINE L2 3167 3309 -4 2455 87 0 3 chr15 72129652 72129964 -13565790 + AluSx SINE Alu 1 311 -1 234 319 43 51 chr15 72129992 72130130 -13565624 - MIR3 SINE MIR -30 178 42 341 309 0 0 chr15 72130271 72130355 -13565399 - MIR SINE MIR -10 252 169 534 240 159 43 chr15 72130390 72130598 -13565156 - MIR SINE MIR -29 233 2 251 292 113 84 chr15 72131787 72132178 -13563576 + L2 LINE L2 2870 3271 -1 776 246 68 19 chr15 72134064 72134271 -13561483 - MIR SINE MIR 0 262 46 207 0 0 0 chr15 72134651 72134674 -13561080 + (GA)n Simple_repeat Simple_repeat 2 24 0 237 119 0 0 chr15 72134790 72134832 -13560922 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 671 239 122 14 chr15 72134892 72135105 -13560649 - MIR SINE MIR -25 237 2 614 226 36 56 chr15 72136037 72136211 -13559543 + MIR SINE MIR 24 200 -62 3889 123 11 51 chr15 72136211 72136342 -13559412 + L1MB3 LINE L1 5539 5674 -509 2279 93 3 45 chr15 72136342 72136654 -13559100 + AluSx SINE Alu 1 299 -13 3889 123 11 51 chr15 72136654 72136782 -13558972 + L1MB3 LINE L1 5674 5806 -377 759 150 8 0 chr15 72136782 72136902 -13558852 + FLAM_C SINE Alu 2 122 -11 3889 123 11 51 chr15 72136902 72137310 -13558444 + L1MB3 LINE L1 5806 6180 -3 614 226 36 56 chr15 72137310 72137347 -13558407 + MIR SINE MIR 200 228 -34 992 174 22 22 chr15 72138004 72138188 -13557566 - MER5A DNA MER1_type -5 184 1 472 207 171 50 chr15 72138208 72138348 -13557406 + MER5A DNA MER1_type 15 171 -18 2241 125 6 0 chr15 72138516 72138827 -13556927 + AluSq SINE Alu 1 313 0 217 167 125 0 chr15 72138939 72138987 -13556767 - MIR SINE MIR -56 152 99 742 180 75 15 chr15 72139569 72139769 -13555985 - MER113 DNA MER1_type? -298 223 12 317 312 16 0 chr15 72140149 72140274 -13555480 + L2 LINE L2 3161 3287 -26 223 204 0 20 chr15 72140278 72140327 -13555427 + GA-rich Low_complexity Low_complexity 2 49 0 2258 104 0 0 chr15 72140476 72140806 -13554948 - AluSg SINE Alu 0 330 1 321 274 96 20 chr15 72141299 72141445 -13554309 + L2 LINE L2 3150 3306 -7 322 308 77 14 chr15 72141803 72141946 -13553808 + MIR3 SINE MIR 34 185 -23 192 289 0 39 chr15 72142156 72142208 -13553546 - L2 LINE L2 -13 3259 3210 308 229 0 29 chr15 72143454 72143524 -13552230 - MIR SINE MIR -55 153 86 196 327 142 31 chr15 72143565 72143819 -13551935 - L2 LINE L2 -1046 2268 1987 21 0 0 0 chr15 72144018 72144039 -13551715 + AT_rich Low_complexity Low_complexity 1 21 0 307 319 37 31 chr15 72144242 72144405 -13551349 + L2 LINE L2 2898 3061 -211 2215 125 3 3 chr15 72144448 72144760 -13550994 - AluSx SINE Alu 0 312 1 220 294 71 56 chr15 72144863 72144989 -13550765 + L2 LINE L2 3165 3292 -21 228 291 164 30 chr15 72146292 72146426 -13549328 + MIR SINE MIR 49 200 -62 241 276 61 98 chr15 72147186 72147249 -13548505 - L2 LINE L2 -217 3055 2991 508 259 73 116 chr15 72147249 72147604 -13548150 - MER102b DNA MER1_type -1 340 1 241 276 61 98 chr15 72147604 72147754 -13548000 - L2 LINE L2 -281 2991 2850 188 298 18 0 chr15 72149516 72149573 -13546181 + L2 LINE L2 3194 3251 -21 363 241 11 11 chr15 72149859 72149946 -13545808 + MIR SINE MIR 54 140 -122 226 161 0 107 chr15 72149953 72149974 -13545780 + Alu SINE Alu 121 135 -167 1857 154 0 29 chr15 72149974 72150286 -13545468 + AluJb SINE Alu 1 303 -9 203 316 160 40 chr15 72150921 72151146 -13544608 - L2 LINE L2 -1314 2000 1749 2393 97 0 3 chr15 72151658 72151967 -13543787 - AluSc SINE Alu -1 308 1 573 274 66 46 chr15 72153253 72153494 -13542260 - MIR SINE MIR 0 262 17 942 196 32 57 chr15 72153657 72153937 -13541817 + MER58 DNA MER1_type 2145 2417 -3 1197 205 68 14 chr15 72154781 72155074 -13540680 + L1MB4 LINE L1 5827 6135 -45 939 184 25 0 chr15 72155074 72155232 -13540522 + AluSg/x SINE Alu 130 291 -21 241 121 0 103 chr15 72155232 72155244 -13540510 + L1MB2 LINE L1 6120 6132 -39 1089 204 89 79 chr15 72155244 72155636 -13540118 - MSTD LTR MaLR 0 396 1 241 121 0 103 chr15 72155636 72155681 -13540073 + L1MB2 LINE L1 6132 6171 0 292 161 0 0 chr15 72156125 72156187 -13539567 + L1MA7 LINE L1 6225 6286 -5 2117 91 8 0 chr15 72156416 72156679 -13539075 - AluSx SINE Alu -12 300 36 240 160 40 0 chr15 72157587 72157637 -13538117 + MER20 DNA MER1_type 168 219 0 1485 150 61 34 chr15 72157783 72157974 -13537780 + L1MA9 LINE L1 5973 6178 -134 2171 107 0 23 chr15 72157974 72158274 -13537480 + AluSx SINE Alu 1 293 -19 1485 150 61 34 chr15 72158274 72158408 -13537346 + L1MA9 LINE L1 6178 6307 -5 180 0 0 0 chr15 72158428 72158448 -13537306 + (A)n Simple_repeat Simple_repeat 1 20 0 1862 157 7 0 chr15 72158869 72159177 -13536577 + AluSq SINE Alu 1 310 0 23 0 0 0 chr15 72160375 72160398 -13535356 + AT_rich Low_complexity Low_complexity 1 23 0 272 231 26 26 chr15 72160537 72160615 -13535139 - MIR3 SINE MIR -7 201 124 440 335 86 25 chr15 72162430 72162675 -13533079 + MIR SINE MIR 3 262 0 438 287 20 47 chr15 72162866 72163016 -13532738 - MIR3 SINE MIR -12 196 51 275 257 10 79 chr15 72163608 72163709 -13532045 - MIR3 SINE MIR -34 174 81 2175 126 7 0 chr15 72164017 72164318 -13531436 + AluSx SINE Alu 1 303 -9 188 282 248 26 chr15 72164772 72164889 -13530865 - L2 LINE L2 -8 3264 3122 187 256 22 100 chr15 72166230 72166320 -13529434 - L2 LINE L2 -4 3309 3227 814 219 86 55 chr15 72167003 72167423 -13528331 - MLT1D LTR MaLR 0 467 1 428 271 73 33 chr15 72168030 72168181 -13527573 - MER5B DNA MER1_type -4 174 18 360 279 18 0 chr15 72169096 72169207 -13526547 + MER81 DNA DNA 1 113 -1 531 280 34 46 chr15 72169894 72170069 -13525685 + MER5B DNA MER1_type 6 178 0 345 213 38 0 chr15 72170106 72170186 -13525568 + MER58 DNA MER1_type 177 259 -82 384 164 14 14 chr15 72170233 72170306 -13525448 + MER58 DNA MER1_type 2348 2420 0 391 336 8 0 chr15 72171311 72171430 -13524324 + MIR3 SINE MIR 59 178 -30 308 262 248 7 chr15 72171457 72171602 -13524152 - MER5A DNA MER1_type 0 189 10 212 361 24 12 chr15 72171995 72172078 -13523676 + MIR SINE MIR 173 256 -6 402 21 0 0 chr15 72172745 72172792 -13522962 + (CA)n Simple_repeat Simple_repeat 1 47 0 675 274 91 15 chr15 72172868 72173101 -13522653 - MIR SINE MIR -12 250 4 441 324 83 14 chr15 72174013 72174229 -13521525 + MIR SINE MIR 26 256 -6 291 303 149 9 chr15 72174723 72174944 -13520810 + L2 LINE L2 2720 2971 -343 344 265 81 66 chr15 72174953 72175126 -13520628 + MER5A DNA MER1_type 7 188 -1 613 278 76 40 chr15 72175220 72175470 -13520284 - MIR SINE MIR -1 261 1 266 307 184 0 chr15 72175514 72175628 -13520126 + L2 LINE L2 3166 3300 -13 351 231 77 0 chr15 72176180 72176271 -13519483 + MIR SINE MIR 54 151 -57 403 241 0 54 chr15 72176271 72176383 -13519371 + MER117 DNA MER1_type 7 112 -85 304 333 53 15 chr15 72176477 72176609 -13519145 + MIR SINE MIR 86 222 -40 871 247 107 28 chr15 72177177 72177685 -13518069 - MLT1G LTR MaLR -2 553 1 1387 256 142 58 chr15 72177685 72178578 -13517176 - L2 LINE L2 -5 3308 2316 319 300 93 27 chr15 72179824 72179974 -13515780 + L3 LINE CR1 1240 1399 -178 240 113 0 0 chr15 72180126 72180179 -13515575 - L1MB3 LINE L1 -4 6179 6127 * 5066 124 40 17 chr15 72180175 72181143 -13514611 - L1PA16 LINE L1 0 6166 5182 1543 165 23 37 chr15 72181165 72181557 -13514197 + L1M3 LINE L1 5034 5424 -756 2504 142 51 7 chr15 72181557 72181967 -13513787 - MSTA LTR MaLR 0 428 1 1543 165 23 37 chr15 72181967 72182099 -13513655 + L1M3 LINE L1 5424 5556 -624 394 303 28 0 chr15 72182254 72182363 -13513391 - MIR SINE MIR -110 152 41 432 240 66 0 chr15 72182911 72183042 -13512712 - MIR SINE MIR -62 146 28 1082 142 16 21 chr15 72183342 72183532 -13512222 + MER5A DNA MER1_type 1 189 0 204 407 101 20 chr15 72183584 72183783 -13511971 + L3 LINE CR1 96 310 -1267 392 276 0 0 chr15 72183942 72184040 -13511714 - MIR SINE MIR -74 188 91 182 163 163 0 chr15 72184103 72184146 -13511608 + L3 LINE CR1 1524 1573 -4 1032 305 195 56 chr15 72184384 72185249 -13510505 + L3 LINE CR1 536 1536 -41 1774 159 32 86 chr15 72185249 72185658 -13510096 - MLT1B LTR MaLR -3 387 1 1032 305 195 56 chr15 72185658 72185703 -13510051 + L3 LINE CR1 1536 1573 -4 991 294 78 11 chr15 72186735 72187184 -13508570 - L1MC4a LINE L1 -1942 5866 5388 279 375 57 42 chr15 72187537 72187820 -13507934 - L2 LINE L2 -1 3271 2985 185 356 40 10 chr15 72187893 72187994 -13507760 - L2 LINE L2 -481 2833 2730 441 233 84 84 chr15 72189241 72189443 -13506311 - MLT1J2 LTR MaLR -6 444 243 180 358 24 16 chr15 72190099 72190222 -13505532 - L2 LINE L2 -221 3051 2928 221 267 89 111 chr15 72190557 72190692 -13505062 + MIR3 SINE MIR 27 158 -50 1887 101 31 4 chr15 72190766 72191024 -13504730 - AluSx SINE Alu -12 300 36 375 189 53 0 chr15 72191024 72191119 -13504635 + Charlie8 DNA MER1_type 67 166 -2251 461 247 219 0 chr15 72191397 72191543 -13504211 + MER5B DNA MER1_type 1 178 0 455 246 57 0 chr15 72191544 72191666 -13504088 + L3 LINE CR1 1389 1517 -60 181 328 15 0 chr15 72191963 72192030 -13503724 + MIR SINE MIR 20 87 -175 545 284 7 19 chr15 72194139 72194294 -13501460 - MIR3 SINE MIR -11 197 45 181 227 182 30 chr15 72194273 72194339 -13501415 + MIR SINE MIR 68 143 -65 * 442 219 88 29 chr15 72194777 72194914 -13500840 + MER58B DNA MER1_type 197 341 0 307 286 22 0 chr15 72194929 72195020 -13500734 + MIR SINE MIR 46 138 -70 246 62 0 0 chr15 72195231 72195263 -13500491 + (T)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr15 72196916 72196944 -13498810 + AT_rich Low_complexity Low_complexity 1 28 0 251 85 21 0 chr15 72198765 72198812 -13496942 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 637 320 55 52 chr15 72199469 72199888 -13495866 + L2 LINE L2 2848 3267 -5 201 287 201 4 chr15 72199986 72200112 -13495642 - MIR SINE MIR -41 167 14 309 272 26 44 chr15 72201928 72202196 -13493558 + L2 LINE L2 2712 3066 -206 204 284 40 14 chr15 72202287 72202361 -13493393 + MER5B DNA MER1_type 45 120 -58 533 261 45 0 chr15 72202810 72202967 -13492787 - MER5B DNA MER1_type -14 164 1 401 306 0 0 chr15 72203214 72203325 -13492429 + L2 LINE L2 3202 3312 -1 697 262 16 6 chr15 72204364 72204547 -13491207 - MIR SINE MIR -48 214 30 207 287 74 9 chr15 72204606 72204714 -13491040 + MIR SINE MIR 136 250 -12 209 164 0 127 chr15 72205781 72205836 -13489918 + L2 LINE L2 3266 3313 0 366 272 213 6 chr15 72206090 72206259 -13489495 - MIR SINE MIR -12 250 47 1614 192 28 47 chr15 72206340 72206699 -13489055 - MLT1A2 LTR MaLR 0 374 23 306 273 182 25 chr15 72207350 72207592 -13488162 - L2 LINE L2 -1 3271 2992 28 86 0 0 chr15 72209901 72209971 -13485783 + AT_rich Low_complexity Low_complexity 1 70 0 311 236 18 55 chr15 72210216 72210326 -13485428 - LTR33A LTR ERVL 0 523 418 3550 51 2 0 chr15 72210787 72211220 -13484534 - L1PA7 LINE L1 -13 6141 5708 216 284 9 37 chr15 72211234 72211343 -13484411 - MIR SINE MIR -111 151 46 287 59 0 0 chr15 72212452 72212486 -13483268 + U2 snRNA snRNA 1 34 -154 6027 151 19 60 chr15 72213412 72214423 -13481331 + L1MA4 LINE L1 4160 5109 -1037 1818 164 0 26 chr15 72214423 72214735 -13481019 + AluJb SINE Alu 1 304 -8 6027 151 19 60 chr15 72214735 72215009 -13480745 + L1MA4 LINE L1 5109 5393 -753 1133 161 0 6 chr15 72215010 72215184 -13480570 + FRAM SINE Alu 1 170 -6 6274 98 18 2 chr15 72215184 72216077 -13479677 + L1MA4 LINE L1 5392 6298 -2 330 26 0 0 chr15 72216078 72216117 -13479637 + (CA)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr15 72216190 72216218 -13479536 + AT_rich Low_complexity Low_complexity 1 28 0 1221 247 230 39 chr15 72216695 72217330 -13478424 + HAL1 LINE L1 11 766 -1741 261 83 0 0 chr15 72217330 72217366 -13478388 + (A)n Simple_repeat Simple_repeat 1 36 0 429 228 88 112 chr15 72217413 72217763 -13477991 + MLT1I LTR MaLR 67 409 0 427 259 62 0 chr15 72217766 72217878 -13477876 + HAL1 LINE L1 781 899 -1608 * 2203 23 0 0 chr15 72217874 72218130 -13477624 - L1PA4 LINE L1 -2196 3950 3695 12252 30 0 2 chr15 72218130 72220334 -13475420 + L1PA4 LINE L1 3950 6155 0 478 243 75 41 chr15 72220335 72220602 -13475152 + HAL1 LINE L1 887 1162 -1345 424 294 57 40 chr15 72220603 72220780 -13474974 + HAL1 LINE L1 1203 1382 -1125 1114 224 19 19 chr15 72221455 72221719 -13474035 + L1ME2 LINE L1 5572 5835 -329 341 373 53 0 chr15 72224680 72224889 -13470865 - MIR SINE MIR -19 243 24 228 246 16 0 chr15 72227677 72227738 -13468016 + MIR SINE MIR 36 97 -111 1359 141 0 96 chr15 72228973 72229264 -13466490 + L1MA5A LINE L1 6031 6293 -4 309 305 46 0 chr15 72229500 72229631 -13466123 - L2 LINE L2 -1 3312 3176 36 23 0 0 chr15 72229731 72229774 -13465980 + AT_rich Low_complexity Low_complexity 1 43 0 1658 193 18 48 chr15 72229985 72230168 -13465586 + MLT1B LTR MaLR 3 190 -200 2325 96 0 3 chr15 72230168 72230461 -13465293 + AluSg SINE Alu 1 292 -18 1658 193 18 48 chr15 72230461 72230677 -13465077 + MLT1B LTR MaLR 190 390 0 522 287 43 57 chr15 72232253 72232462 -13463292 + L1MC/D LINE L1 5404 5609 -2199 3885 151 6 14 chr15 72232465 72233108 -13462646 + L1PA15 LINE L1 5523 6160 -5 456 310 128 54 chr15 72233165 72233318 -13462436 + MLT1L LTR MaLR 3 143 -472 538 213 226 7 chr15 72233318 72233473 -13462281 - MER5A DNA MER1_type 0 189 1 456 310 128 54 chr15 72233473 72233890 -13461864 + MLT1L LTR MaLR 143 615 0 681 255 148 41 chr15 72234636 72235111 -13460643 + L1ME LINE L1 5260 5780 -341 391 297 127 12 chr15 72236135 72236300 -13459454 + L1MC1 LINE L1 5483 5666 -455 338 202 11 64 chr15 72236457 72236645 -13459109 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 * 377 165 40 45 chr15 72236636 72236812 -13458942 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 344 170 64 29 chr15 72236731 72236902 -13458852 + (TA)n Simple_repeat Simple_repeat 2 178 0 * 627 248 96 112 chr15 72237256 72237317 -13458437 + L1ME LINE L1 318 378 -5741 2501 63 0 13 chr15 72237317 72237620 -13458134 + AluY SINE Alu 1 299 -12 627 248 96 112 chr15 72237620 72238064 -13457690 + L1ME LINE L1 378 813 -5306 2865 137 34 0 chr15 72238064 72238530 -13457224 + L1MC1 LINE L1 5851 6332 -1 627 248 96 112 chr15 72238530 72238667 -13457087 + L1ME LINE L1 813 951 -5168 * 1147 242 11 4 chr15 72238658 72238922 -13456832 + L1ME LINE L1 5421 5686 -480 720 240 145 32 chr15 72239439 72239863 -13455891 + L1ME LINE L1 5255 5654 -508 746 301 124 16 chr15 72239964 72240649 -13455105 + L1ME LINE L1 4438 5196 -933 549 250 78 20 chr15 72240671 72240976 -13454778 + L1ME LINE L1 5271 5633 -512 1561 259 144 36 chr15 72240992 72241652 -13454102 - MER21B LTR ERV1 -128 735 5 3048 89 2 35 chr15 72242474 72242937 -13452817 + LTR7 LTR ERV1 1 448 -2 10453 160 53 48 chr15 72242939 72245836 -13449918 + HERVH LTR ERV1 1 2995 -4718 5915 102 11 2 chr15 72245815 72246662 -13449092 + HERVH LTR ERV1 3140 3993 -3720 * 4458 138 0 8 chr15 72246664 72247331 -13448423 + HERVH LTR ERV1 4488 5149 -2564 1400 134 18 5 chr15 72247332 72247549 -13448205 + HERVH LTR ERV1 5600 5819 -1894 * 2349 116 48 13 chr15 72247547 72247926 -13447828 + HERVH LTR ERV1 7322 7713 0 2808 76 103 5 chr15 72247926 72248334 -13447420 + LTR7 LTR ERV1 1 448 -2 258 95 0 0 chr15 72248524 72248566 -13447188 + (CATA)n Simple_repeat Simple_repeat 2 43 0 348 243 200 0 chr15 72248751 72248891 -13446863 - L3 LINE CR1 -320 1257 1090 585 263 174 52 chr15 72249331 72249601 -13446153 - MER115 DNA AcHobo -260 433 131 317 190 168 58 chr15 72250246 72250383 -13445371 + MIR SINE MIR 97 248 -14 206 118 0 0 chr15 72250543 72250577 -13445177 + (T)n Simple_repeat Simple_repeat 1 34 0 23 42 0 21 chr15 72251030 72251056 -13444698 + AT_rich Low_complexity Low_complexity 1 27 -20 2256 114 0 0 chr15 72251056 72251355 -13444399 + AluSx SINE Alu 1 299 -13 23 42 0 21 chr15 72251355 72251376 -13444378 + AT_rich Low_complexity Low_complexity 27 47 0 1886 147 60 41 chr15 72252111 72252479 -13443275 + THE1C LTR MaLR 1 375 0 3100 98 32 132 chr15 72252559 72253149 -13442605 - LTR26B LTR ERV1 0 531 1 685 251 190 0 chr15 72253170 72253381 -13442373 + MIR SINE MIR 2 252 -10 2445 50 14 3 chr15 72253383 72253551 -13442203 - AluY SINE Alu -11 300 126 270 0 0 0 chr15 72253551 72253581 -13442173 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2445 50 14 3 chr15 72253581 72253709 -13442045 - AluY SINE Alu -185 126 1 280 197 164 0 chr15 72254441 72254502 -13441252 - MARNA DNA Mariner -373 213 143 377 308 80 7 chr15 72254561 72254763 -13440991 + MIR SINE MIR 29 243 -19 840 176 82 22 chr15 72254763 72254945 -13440809 + MLT1D LTR MaLR 1 193 -312 476 207 110 41 chr15 72255251 72255396 -13440358 - MLT1I LTR MaLR 0 409 255 708 130 12 25 chr15 72256766 72256927 -13438827 + CT-rich Low_complexity Low_complexity 2 160 0 1008 146 0 0 chr15 72256931 72257109 -13438645 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 293 243 155 44 chr15 72257128 72257354 -13438400 - L1ME4a LINE L1 0 6121 5871 4633 104 10 3 chr15 72257443 72258069 -13437685 - L1PA11 LINE L1 -2 6172 5543 22 35 0 0 chr15 72258083 72258112 -13437642 + AT_rich Low_complexity Low_complexity 1 29 0 375 266 0 0 chr15 72258699 72258793 -13436961 + LTR41 LTR ERVL 674 767 -6 1652 100 181 8 chr15 72259102 72259351 -13436403 + AluSg SINE Alu 1 292 -8 202 237 0 0 chr15 72259493 72259531 -13436223 - MIR SINE MIR -59 149 112 318 354 92 8 chr15 72259712 72259842 -13435912 + MER91A DNA MER1_type 1 141 -55 801 128 8 0 chr15 72260339 72260456 -13435298 + MSTA LTR MaLR 1 118 -310 2337 96 71 42 chr15 72260457 72260811 -13434943 + THE1B LTR MaLR 1 364 0 2715 102 0 3 chr15 72260812 72261185 -13434569 + THE1B-int LTR MaLR 2 373 -1207 776 144 24 8 chr15 72261185 72261310 -13434444 + MSTA LTR MaLR 302 428 0 626 243 104 12 chr15 72264162 72264547 -13431207 + LTR33A LTR ERVL 55 514 -9 532 217 223 0 chr15 72265079 72265236 -13430518 - MIR SINE MIR -6 256 65 1070 249 205 29 chr15 72265321 72265352 -13430402 - L2 LINE L2 0 3313 3289 2741 98 25 0 chr15 72265352 72265718 -13430036 + THE1C LTR MaLR 1 375 0 1070 249 205 29 chr15 72265718 72266101 -13429653 - L2 LINE L2 -24 3289 2975 2576 103 19 30 chr15 72266101 72266469 -13429285 - THE1B LTR MaLR 0 364 1 1070 249 205 29 chr15 72266469 72266677 -13429077 - L2 LINE L2 -338 2975 2593 610 94 31 10 chr15 72266677 72266773 -13428981 + MER4A LTR ERV1 1 98 -566 332 154 19 0 chr15 72266773 72266825 -13428929 + MER4A LTR ERV1 261 313 -351 1479 132 0 108 chr15 72266858 72267146 -13428608 + MER4A LTR ERV1 408 664 0 703 205 86 0 chr15 72267326 72267477 -13428277 + MER3 DNA MER1_type 2 165 -44 521 255 239 4 chr15 72268576 72268705 -13427049 - L2 LINE L2 -472 2842 2745 2998 176 76 17 chr15 72268705 72269285 -13426469 - MER90 LTR ERV1 0 614 1 521 255 239 4 chr15 72269285 72269406 -13426348 - L2 LINE L2 -569 2745 2533 395 301 155 69 chr15 72269420 72269795 -13425959 + L2 LINE L2 2866 3272 0 738 286 132 33 chr15 72270146 72270379 -13425375 - L2 LINE L2 0 3313 3105 2209 116 0 3 chr15 72270379 72270672 -13425082 + AluSx SINE Alu 1 292 -20 738 286 132 33 chr15 72270672 72270977 -13424777 - L2 LINE L2 -208 3105 2737 238 213 131 119 chr15 72271108 72271254 -13424500 - L1ME4a LINE L1 -2 6119 5976 2894 88 3 0 chr15 72271254 72271608 -13424146 - THE1A LTR MaLR 0 355 1 238 213 131 119 chr15 72271608 72271683 -13424071 - L1ME4a LINE L1 -145 5976 5903 1663 167 106 3 chr15 72271683 72271995 -13423759 - MER2 DNA MER2_type 0 344 1 238 213 131 119 chr15 72271995 72272115 -13423639 - L1ME4a LINE L1 -218 5903 5773 257 277 107 45 chr15 72273019 72273131 -13422623 + MER5A DNA MER1_type 56 174 -15 900 161 63 0 chr15 72273131 72273274 -13422480 - AluJb SINE Alu -20 292 141 786 133 4 208 chr15 72273314 72273381 -13422373 - MER5A DNA MER1_type 0 189 110 1914 179 13 43 chr15 72273381 72273773 -13421981 + L1MB4 LINE L1 5801 6180 0 786 133 4 208 chr15 72273773 72273931 -13421823 - MER5A DNA MER1_type -79 110 10 531 230 7 44 chr15 72273966 72274101 -13421653 - MER5B DNA MER1_type -46 132 3 1978 154 36 25 chr15 72274974 72275025 -13420729 + L1MC1 LINE L1 5964 6013 -320 2560 112 27 14 chr15 72275025 72275392 -13420362 - THE1C LTR MaLR -3 372 1 1978 154 36 25 chr15 72275392 72275698 -13420056 + L1MC1 LINE L1 6013 6325 -8 501 267 157 39 chr15 72277781 72278321 -13417433 + L1M4 LINE L1 4490 5093 -1053 247 305 139 5 chr15 72278421 72278608 -13417146 - L2 LINE L2 -1776 1538 1327 180 0 0 0 chr15 72279682 72279702 -13416052 + (CAA)n Simple_repeat Simple_repeat 2 21 0 506 236 20 91 chr15 72279890 72280089 -13415665 - MIR SINE MIR -7 255 71 392 289 104 52 chr15 72280096 72280345 -13415409 - MLT1J LTR MaLR -109 402 141 702 272 38 21 chr15 72280375 72280610 -13415144 - LTR33 LTR ERVL -43 478 240 1308 203 59 90 chr15 72280660 72281084 -13414670 + L1MDa LINE L1 259 669 -5871 1159 120 16 47 chr15 72281084 72281275 -13414479 + MLT1B LTR MaLR 1 185 -205 4431 206 51 62 chr15 72281275 72283002 -13412752 + L1MDa LINE L1 778 2564 -3978 231 214 0 0 chr15 72283002 72283044 -13412710 + MLT2D LTR ERVL 1 42 -372 5608 161 63 11 chr15 72283044 72283384 -13412370 + ERVL-D LTR ERVL 4706 5027 -737 979 121 0 7 chr15 72283384 72283524 -13412230 + MER85 DNA T2_type 1 139 0 5608 161 63 11 chr15 72283524 72284183 -13411571 + ERVL-D LTR ERVL 5027 5757 -7 1670 216 26 29 chr15 72284183 72284616 -13411138 + MLT2D LTR ERVL 1 397 0 4526 229 45 18 chr15 72284622 72285962 -13409792 + L1MDa LINE L1 2566 3941 -2599 525 196 7 61 chr15 72285966 72286114 -13409640 + L1MDa LINE L1 5044 5183 -1357 * 814 221 40 22 chr15 72286110 72286382 -13409372 + L1MA7 LINE L1 3344 3620 -3945 11092 177 41 20 chr15 72286389 72288688 -13407066 + L1MA7 LINE L1 4366 6764 -946 2375 68 0 46 chr15 72288688 72288995 -13406759 + AluY SINE Alu 1 293 -18 11092 177 41 20 chr15 72288995 72289853 -13405901 + L1MA7 LINE L1 6764 7603 -107 3792 181 35 28 chr15 72289867 72290417 -13405337 + L1MB5 LINE L1 5160 5705 -863 1572 171 7 61 chr15 72290417 72290727 -13405027 + AluJo SINE Alu 1 293 -19 3792 181 35 28 chr15 72290727 72291399 -13404355 + L1MB5 LINE L1 5705 6407 -161 867 255 134 9 chr15 72291460 72291789 -13403965 + MLT1F1 LTR MaLR 1 370 -197 481 279 135 9 chr15 72291870 72292092 -13403662 - LTR16A1 LTR ERVL 0 457 208 180 111 0 0 chr15 72294015 72294042 -13401712 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2176 110 20 0 chr15 72295342 72295641 -13400113 + AluSc SINE Alu 1 305 -4 2511 180 24 0 chr15 72295647 72296063 -13399691 - MSTB LTR MaLR 0 426 1 3784 201 175 73 chr15 72296063 72297372 -13398382 - MSTB-int LTR MaLR 0 1580 139 3989 136 16 71 chr15 72297372 72297597 -13398157 + MER72 LTR ERV1 1 237 -485 3020 84 60 0 chr15 72297597 72298000 -13397754 - L1PA8 LINE L1 -10 6162 5736 3989 136 16 71 chr15 72298000 72298538 -13397216 + MER72 LTR ERV1 237 722 0 845 127 0 7 chr15 72298538 72298680 -13397074 - MSTB-int LTR MaLR -1510 141 1 2183 199 22 10 chr15 72298680 72299097 -13396657 - MSTB LTR MaLR -2 424 3 739 256 43 24 chr15 72299519 72299730 -13396024 - MIR SINE MIR -35 227 13 1667 137 68 41 chr15 72299921 72300213 -13395541 + AluJo SINE Alu 1 300 -12 1972 186 25 11 chr15 72300333 72300693 -13395061 + MLT1A1 LTR MaLR 1 365 0 245 108 0 77 chr15 72303190 72303255 -13392499 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 201 302 0 58 chr15 72303344 72303411 -13392343 + MIR3 SINE MIR 112 175 -33 1741 211 55 32 chr15 72303411 72303905 -13391849 + MLT1D LTR MaLR 1 505 0 201 302 0 58 chr15 72303905 72303923 -13391831 + MIR3 SINE MIR 175 192 -16 213 39 0 0 chr15 72304725 72304751 -13391003 + (T)n Simple_repeat Simple_repeat 1 26 0 915 196 179 47 chr15 72306630 72306971 -13388783 + MLT1B LTR MaLR 5 390 0 493 314 69 24 chr15 72308190 72308515 -13387239 + L1ME LINE L1 5443 5776 -345 30 0 0 0 chr15 72308538 72308568 -13387186 + AT_rich Low_complexity Low_complexity 1 30 0 520 254 16 0 chr15 72312220 72312346 -13383408 - MER119 DNA MER1_type -1 582 455 346 307 61 18 chr15 72312349 72312463 -13383291 - MER119 DNA MER1_type -462 121 3 2512 63 7 3 chr15 72312697 72312996 -13382758 + AluSp SINE Alu 1 300 -13 262 158 70 0 chr15 72313686 72313743 -13382011 + GA-rich Low_complexity Low_complexity 3 63 0 429 209 63 134 chr15 72314869 72315122 -13380632 + MER112 DNA MER1_type 13 247 -13 247 196 11 54 chr15 72319019 72319111 -13376643 + T-rich Low_complexity Low_complexity 1 88 0 326 261 90 18 chr15 72319948 72320059 -13375695 - L2 LINE L2 -50 3222 3104 25 0 0 0 chr15 72321719 72321744 -13374010 + AT_rich Low_complexity Low_complexity 1 25 0 1060 331 115 43 chr15 72324698 72325847 -13369907 + L1ME4a LINE L1 4172 5403 -743 244 269 0 0 chr15 72326321 72326373 -13369381 + L1ME4a LINE L1 5519 5570 -551 574 290 63 30 chr15 72326385 72326720 -13369034 + L1ME4a LINE L1 5772 6117 -4 513 271 91 23 chr15 72328711 72328932 -13366822 + MER112 DNA MER1_type 17 252 -8 674 259 70 77 chr15 72331079 72331496 -13364258 + MLT1J1 LTR MaLR 27 402 -7 187 345 69 21 chr15 72331735 72331880 -13363874 - L2 LINE L2 -4 3268 3117 494 244 0 47 chr15 72333336 72333463 -13362291 + L2 LINE L2 3193 3313 0 180 0 0 0 chr15 72334115 72334135 -13361619 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 727 124 91 0 chr15 72334135 72334256 -13361498 + FLAM_C SINE Alu 2 133 0 338 353 37 5 chr15 72334562 72334749 -13361005 + L1MEd LINE L1 481 673 -5446 1365 200 65 18 chr15 72335386 72335805 -13359949 - LTR2B LTR ERV1 0 490 7 481 246 17 8 chr15 72335824 72335942 -13359812 + L2 LINE L2 3195 3313 0 5965 19 17 0 chr15 72337832 72338468 -13357286 + SVA Other Other 740 1386 0 185 0 0 39 chr15 72338471 72338497 -13357257 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 432 232 53 0 chr15 72339875 72339970 -13355784 + MER5A DNA MER1_type 7 106 -83 224 360 0 0 chr15 72340667 72340753 -13355001 + MIR3 SINE MIR 96 181 -27 247 204 56 0 chr15 72341886 72341940 -13353814 + L2 LINE L2 3216 3272 0 779 173 7 21 chr15 72341955 72342240 -13353514 + GA-rich Low_complexity Low_complexity 1 281 0 1599 171 46 14 chr15 72342871 72343151 -13352603 + AluJb SINE Alu 14 302 -10 785 267 55 0 chr15 72343634 72343836 -13351918 - MIR SINE MIR -27 235 23 216 244 0 90 chr15 72343849 72343927 -13351827 + MIR SINE MIR 186 256 -6 590 268 132 4 chr15 72344852 72345087 -13350667 - MER115 DNA AcHobo -238 455 191 199 301 97 18 chr15 72345329 72345442 -13350312 + MIR SINE MIR 67 188 -74 231 217 0 17 chr15 72345647 72345707 -13350047 + (TGG)n Simple_repeat Simple_repeat 1 59 0 2197 107 24 3 chr15 72346832 72347123 -13348631 - AluSq SINE Alu -16 297 1 23 0 0 0 chr15 72349069 72349092 -13346662 + AT_rich Low_complexity Low_complexity 1 23 0 219 139 0 0 chr15 72349629 72349665 -13346089 + (CA)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr15 72349734 72349764 -13345990 + (A)n Simple_repeat Simple_repeat 1 30 0 1518 226 24 0 chr15 72350654 72350986 -13344768 - MER58B DNA MER1_type -1 340 1 2228 75 0 0 chr15 72351136 72351403 -13344351 + AluY SINE Alu 25 291 -20 2283 121 0 0 chr15 72351428 72351734 -13344020 + AluSx SINE Alu 1 306 -6 457 245 34 94 chr15 72351940 72352205 -13343549 + L1MC4 LINE L1 7794 8042 0 1873 166 10 0 chr15 72352226 72352521 -13343233 + AluJb SINE Alu 1 298 -14 2078 121 13 0 chr15 72353774 72354072 -13341682 + AluSq SINE Alu 1 302 -11 193 170 57 0 chr15 72354826 72354879 -13340875 + CT-rich Low_complexity Low_complexity 3 58 0 311 317 258 0 chr15 72356480 72356701 -13339053 + L1ME4a LINE L1 5840 6117 -4 289 267 75 20 chr15 72356865 72357011 -13338743 + L1M4 LINE L1 4146 4299 -1847 2256 80 3 0 chr15 72357011 72357311 -13338443 - AluY SINE Alu -10 301 1 21 0 0 0 chr15 72357373 72357394 -13338360 + AT_rich Low_complexity Low_complexity 1 21 0 2250 81 0 7 chr15 72357685 72357993 -13337761 + AluSc SINE Alu 1 306 -3 1131 191 143 60 chr15 72358845 72359086 -13336668 + MER2 DNA MER2_type 5 279 -65 1702 138 3 52 chr15 72359086 72359391 -13336363 - AluJb SINE Alu -19 293 4 1131 191 143 60 chr15 72359391 72359463 -13336291 + MER2 DNA MER2_type 279 344 0 467 263 47 17 chr15 72359744 72359980 -13335774 + L1M4 LINE L1 4399 4641 -1505 209 306 65 74 chr15 72360072 72360180 -13335574 + MIR SINE MIR 35 141 -67 2397 113 22 19 chr15 72360616 72360979 -13334775 + THE1B LTR MaLR 1 364 0 267 119 45 37 chr15 72361601 72361735 -13334019 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 239 163 136 0 chr15 72361737 72361884 -13333870 + (TA)n Simple_repeat Simple_repeat 1 167 0 * 359 90 32 106 chr15 72361842 72362031 -13333723 + (CATATA)n Simple_repeat Simple_repeat 5 179 0 558 80 51 34 chr15 72362060 72362235 -13333519 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 32 0 0 0 chr15 72362235 72362267 -13333487 + AT_rich Low_complexity Low_complexity 1 32 0 2232 64 7 13 chr15 72362267 72362565 -13333189 - AluY SINE Alu -15 296 1 296 301 0 24 chr15 72362728 72362811 -13332943 + MIR3 SINE MIR 83 163 -45 1796 105 97 4 chr15 72363032 72363299 -13332455 + AluSc SINE Alu 1 292 -17 1614 153 0 44 chr15 72363299 72363592 -13332162 - AluJo SINE Alu -31 281 1 186 103 0 0 chr15 72364325 72364354 -13331400 + (CA)n Simple_repeat Simple_repeat 2 30 0 1353 233 101 43 chr15 72365437 72365883 -13329871 + MLT2B1 LTR ERVL 1 472 -48 212 111 22 0 chr15 72365884 72365929 -13329825 + CT-rich Low_complexity Low_complexity 1 46 0 318 26 0 0 chr15 72365929 72365968 -13329786 + (CA)n Simple_repeat Simple_repeat 1 39 0 2182 117 0 0 chr15 72366341 72366649 -13329105 - AluSx SINE Alu -3 309 2 973 147 0 0 chr15 72366937 72367087 -13328667 + AluSg/x SINE Alu 135 284 -26 510 303 64 37 chr15 72367088 72367306 -13328448 - MIR SINE MIR 0 262 39 260 284 181 55 chr15 72367755 72368136 -13327618 + MLT1K LTR MaLR 9 437 -151 207 333 71 32 chr15 72369314 72369440 -13326314 + MIR3 SINE MIR 7 137 -71 316 281 168 40 chr15 72370099 72370319 -13325435 + L1MC4a LINE L1 4531 4721 -1425 2437 113 85 15 chr15 72370319 72370719 -13325035 + MSTA LTR MaLR 1 428 0 316 281 168 40 chr15 72370719 72370967 -13324787 + L1MC4a LINE L1 4721 5059 -1087 2233 112 0 0 chr15 72371039 72371351 -13324403 + AluSx SINE Alu 1 312 0 2143 117 13 0 chr15 72371407 72371714 -13324040 - AluSx SINE Alu -1 311 1 1264 253 118 14 chr15 72371739 72371832 -13323922 + L1MC4a LINE L1 5255 5337 -784 198 0 0 0 chr15 72371832 72371854 -13323900 + (CA)n Simple_repeat Simple_repeat 1 22 0 1264 253 118 14 chr15 72371854 72372276 -13323478 + L1MC4a LINE L1 5337 5837 -284 3793 187 38 42 chr15 72372347 72373187 -13322567 + L1MB8 LINE L1 4929 5771 -407 2303 119 32 19 chr15 72373187 72373557 -13322197 + THE1C LTR MaLR 1 375 0 3793 187 38 42 chr15 72373557 72373902 -13321852 + L1MB8 LINE L1 5771 6113 -65 816 128 15 23 chr15 72373902 72374035 -13321719 - FLAM_C SINE Alu 0 133 2 3793 187 38 42 chr15 72374035 72374101 -13321653 + L1MB8 LINE L1 6113 6178 0 306 73 0 0 chr15 72374114 72374155 -13321599 + (TG)n Simple_repeat Simple_repeat 2 42 0 612 299 41 33 chr15 72375571 72375815 -13319939 - Charlie8 DNA MER1_type -2171 246 1 188 245 88 59 chr15 72376131 72376233 -13319521 + L3b LINE CR1 1200 1304 -279 296 217 20 8 chr15 72377127 72377214 -13318540 + MIR SINE MIR 63 146 -62 3075 107 51 81 chr15 72377214 72377804 -13317950 + MER4B LTR ERV1 3 574 -36 290 280 13 0 chr15 72377860 72377935 -13317819 + MIR SINE MIR 187 262 0 5250 143 27 11 chr15 72378196 72379083 -13316671 + MER4D LTR ERV1 3 903 0 450 307 26 33 chr15 72379291 72379444 -13316310 + MIR3 SINE MIR 18 169 -39 304 285 124 8 chr15 72380337 72380477 -13315277 - MIR SINE MIR -23 185 37 262 206 32 0 chr15 72380498 72380561 -13315193 - MER20 DNA MER1_type -133 86 22 375 280 143 19 chr15 72381830 72382108 -13313646 + L1ME LINE L1 5389 5697 -473 407 317 114 7 chr15 72382258 72382539 -13313215 - L1ME4a LINE L1 -153 5968 5658 203 338 14 0 chr15 72382876 72382947 -13312807 - L2 LINE L2 0 3313 3242 240 111 0 0 chr15 72385558 72385594 -13310160 + (GAA)n Simple_repeat Simple_repeat 2 37 0 415 265 66 29 chr15 72385615 72385751 -13310003 + MIR3 SINE MIR 4 144 -64 22 35 0 0 chr15 72386265 72386294 -13309460 + GC_rich Low_complexity Low_complexity 1 29 0 518 235 20 92 chr15 72386769 72386965 -13308789 + MIR SINE MIR 71 252 -10 180 0 0 0 chr15 72387156 72387176 -13308578 + (TTG)n Simple_repeat Simple_repeat 2 21 0 321 89 0 0 chr15 72388971 72389016 -13306738 + (A)n Simple_repeat Simple_repeat 1 45 0 299 298 0 0 chr15 72389288 72389382 -13306372 + A-rich Low_complexity Low_complexity 1 94 0 231 125 0 0 chr15 72389430 72389470 -13306284 + (A)n Simple_repeat Simple_repeat 1 40 0 46 19 0 0 chr15 72389470 72389523 -13306231 + AT_rich Low_complexity Low_complexity 1 53 0 258 237 31 52 chr15 72389690 72389787 -13305967 - MIR SINE MIR -39 223 129 195 236 91 0 chr15 72389867 72389922 -13305832 - MIR SINE MIR -61 147 88 2599 207 50 23 chr15 72390404 72390980 -13304774 - MLT1E LTR MaLR 0 593 2 196 192 19 58 chr15 72391102 72391154 -13304600 + L3 LINE CR1 1514 1563 -14 213 220 55 110 chr15 72391403 72391462 -13304292 + MIR SINE MIR 81 135 -127 2066 88 53 0 chr15 72391462 72391746 -13304008 + AluSp SINE Alu 1 299 -14 213 220 55 110 chr15 72391746 72391777 -13303977 + MIR SINE MIR 135 166 -96 5864 194 46 11 chr15 72392154 72393369 -13302385 + Charlie1a DNA MER1_type 1 1258 -197 785 177 0 0 chr15 72393379 72393503 -13302251 - FLAM_C SINE Alu -18 125 2 529 151 111 70 chr15 72393524 72393696 -13302058 + Charlie1a DNA MER1_type 1277 1455 0 396 167 89 22 chr15 72393817 72393907 -13301847 + L1MA3 LINE L1 6200 6295 -10 313 299 68 28 chr15 72393960 72394137 -13301617 - MLT1L LTR MaLR -57 558 375 315 0 0 0 chr15 72394614 72394649 -13301105 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1803 99 33 56 chr15 72394651 72394955 -13300799 - AluSx SINE Alu -13 299 3 303 190 50 33 chr15 72395277 72395296 -13300458 + (TAGA)n Simple_repeat Simple_repeat 2 19 -105 869 113 0 0 chr15 72395296 72395411 -13300343 - FLAM_C SINE Alu -18 115 1 303 190 50 33 chr15 72395411 72395512 -13300242 + (TAGA)n Simple_repeat Simple_repeat 19 124 0 745 204 125 7 chr15 72395574 72395766 -13299988 + MIR SINE MIR 55 260 -2 222 37 0 0 chr15 72396146 72396173 -13299581 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 1816 132 4 4 chr15 72396173 72396454 -13299300 - AluSx SINE Alu -31 281 1 263 175 53 35 chr15 72396893 72396950 -13298804 - MIR SINE MIR -88 174 117 219 302 151 16 chr15 72397473 72397599 -13298155 - MIR SINE MIR -3 259 117 415 231 39 29 chr15 72398275 72398379 -13297375 + MER81 DNA DNA 5 109 -5 300 223 257 14 chr15 72398498 72398613 -13297141 - MIR SINE MIR 0 262 113 236 155 0 17 chr15 72398703 72398761 -13296993 + GA-rich Low_complexity Low_complexity 2 58 0 2251 101 0 0 chr15 72399578 72399884 -13295870 - AluSx SINE Alu -6 306 1 558 189 27 9 chr15 72400020 72400131 -13295623 + MER81 DNA DNA 2 114 0 301 263 42 32 chr15 72400465 72400560 -13295194 - MIR SINE MIR -78 184 89 605 197 0 7 chr15 72401685 72401827 -13293927 + GA-rich Low_complexity Low_complexity 3 143 0 505 261 42 14 chr15 72402250 72402274 -13293480 + L2 LINE L2 3168 3190 -123 216 0 0 0 chr15 72402274 72402298 -13293456 + (CA)n Simple_repeat Simple_repeat 2 25 0 505 261 42 14 chr15 72402298 72402415 -13293339 + L2 LINE L2 3190 3313 0 604 267 65 24 chr15 72402435 72402682 -13293072 + MIR SINE MIR 5 261 -1 319 309 58 37 chr15 72402709 72402897 -13292857 + L2 LINE L2 2596 2787 -527 462 233 0 19 chr15 72403345 72403448 -13292306 + MER81 DNA DNA 1 101 -13 251 341 98 32 chr15 72403483 72403606 -13292148 + L2 LINE L2 3138 3268 -4 227 233 167 0 chr15 72403632 72403692 -13292062 + MIR SINE MIR 35 104 -158 656 271 61 11 chr15 72403711 72403826 -13291928 + MIR SINE MIR 73 202 -60 2562 30 0 0 chr15 72403826 72404124 -13291630 + AluY SINE Alu 1 298 -13 656 271 61 11 chr15 72404124 72404189 -13291565 + MIR SINE MIR 202 262 0 621 216 92 7 chr15 72404328 72404481 -13291273 + MER5B DNA MER1_type 13 178 0 937 184 6 0 chr15 72404988 72405162 -13290592 - FRAM SINE Alu -10 166 1 237 276 149 46 chr15 72406254 72406428 -13289326 + MIR SINE MIR 12 203 -59 2250 171 10 0 chr15 72407347 72407733 -13288021 - MLT1B LTR MaLR 0 390 1 2098 168 63 41 chr15 72407745 72407865 -13287889 + MLT2C2 LTR ERVL 7 123 -341 2260 100 0 7 chr15 72407865 72408175 -13287579 - AluSx SINE Alu -4 308 1 2098 168 63 41 chr15 72408175 72408465 -13287289 + MLT2C2 LTR ERVL 123 426 -38 251 129 0 0 chr15 72408492 72408538 -13287216 - MLT2C2 LTR ERVL -2 462 428 392 300 37 39 chr15 72408578 72408817 -13286937 - L1MC/D LINE L1 -567 5599 5379 2518 198 14 40 chr15 72408839 72408933 -13286821 - MER34 LTR ERV1 -6 536 441 207 0 0 0 chr15 72408933 72408956 -13286798 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2178 84 3 0 chr15 72408958 72409243 -13286511 - AluSp SINE Alu -27 286 1 2518 198 14 40 chr15 72409243 72409640 -13286114 - MER34 LTR ERV1 -102 440 55 2219 105 0 0 chr15 72409640 72409945 -13285809 + AluSg SINE Alu 1 305 -5 2518 198 14 40 chr15 72409945 72409999 -13285755 - MER34 LTR ERV1 -487 55 1 1253 189 186 6 chr15 72410104 72410421 -13285333 + MLT1A2 LTR MaLR 1 374 0 614 276 115 55 chr15 72410967 72411742 -13284012 - L1MC/D LINE L1 -1218 4928 4108 2334 149 58 26 chr15 72411754 72412169 -13283585 - MSTC LTR MaLR 0 428 1 203 291 246 0 chr15 72412205 72412339 -13283415 + MIR SINE MIR 78 244 -18 225 333 0 0 chr15 72412432 72412540 -13283214 + (TA)n Simple_repeat Simple_repeat 1 108 0 2262 90 0 0 chr15 72413545 72413855 -13281899 - AluY SINE Alu -1 310 1 279 310 8 0 chr15 72413912 72414041 -13281713 + (TA)n Simple_repeat Simple_repeat 1 130 0 2338 77 0 13 chr15 72415443 72415756 -13279998 + AluSg SINE Alu 1 309 -1 2328 79 3 0 chr15 72416053 72416356 -13279398 - L1PB1 LINE L1 -2 6149 5846 482 268 162 0 chr15 72416362 72416504 -13279250 + MIR SINE MIR 47 211 -51 1069 269 126 82 chr15 72416782 72417818 -13277936 + L2 LINE L2 1814 2894 -420 420 322 41 79 chr15 72417851 72418003 -13277751 - L2 LINE L2 -2505 809 653 1951 114 0 39 chr15 72418003 72418309 -13277445 + AluSx SINE Alu 14 307 -5 420 322 41 79 chr15 72418309 72418597 -13277157 - L2 LINE L2 -2661 653 386 3198 205 93 65 chr15 72418966 72420165 -13275589 + L1MC5 LINE L1 6680 7912 -49 291 244 37 24 chr15 72420462 72420544 -13275210 + MIR SINE MIR 174 256 -6 1194 179 138 0 chr15 72421505 72421729 -13274025 + MSTB LTR MaLR 1 255 -171 9353 165 53 5 chr15 72421729 72423300 -13272454 + MLT1A2-int LTR MaLR 5 1651 0 2144 152 103 8 chr15 72423300 72423689 -13272065 + MSTB LTR MaLR 1 426 0 808 156 7 0 chr15 72425073 72425208 -13270546 + FLAM_C SINE Alu 1 136 -7 231 330 23 11 chr15 72425476 72425564 -13270190 + MIR3 SINE MIR 74 162 -46 1159 0 15 0 chr15 72425936 72426068 -13269686 + L1PA2 LINE L1 6022 6155 0 1391 169 24 27 chr15 72426140 72426436 -13269318 + L1 LINE L1 3777 4071 -2075 300 91 0 0 chr15 72426436 72426480 -13269274 + (A)n Simple_repeat Simple_repeat 1 44 0 2146 101 0 3 chr15 72426772 72427070 -13268684 - AluSg1 SINE Alu -12 297 1 239 0 32 0 chr15 72428076 72428107 -13267647 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 370 258 28 17 chr15 72428107 72428130 -13267624 + (TA)n Simple_repeat Simple_repeat 1 22 -158 2187 98 6 13 chr15 72428130 72428445 -13267309 - AluSp SINE Alu 0 313 1 370 258 28 17 chr15 72428445 72428599 -13267155 + (TA)n Simple_repeat Simple_repeat 22 180 0 516 224 126 0 chr15 72430036 72430179 -13265575 + MER112 DNA MER1_type 94 254 -6 217 294 163 13 chr15 72430239 72430392 -13265362 + MIR SINE MIR 17 192 -70 2354 72 0 3 chr15 72430839 72431143 -13264611 + AluY SINE Alu 9 311 0 496 106 407 0 chr15 72431144 72431257 -13264497 - MER34C LTR ERV1 -272 313 155 367 232 6 125 chr15 72431257 72431329 -13264425 - MER57A-int LTR ERV1 -4135 988 946 1289 235 3 0 chr15 72431329 72431631 -13264123 - AluSc SINE Alu -6 303 1 367 232 6 125 chr15 72431631 72431726 -13264028 - MER57A-int LTR ERV1 -4177 946 841 487 123 12 12 chr15 72431843 72431924 -13263830 - MER57A-int LTR ERV1 -6700 837 757 828 141 0 8 chr15 72431940 72432061 -13263693 + FLAM_C SINE Alu 6 125 -18 21 0 0 0 chr15 72432067 72432088 -13263666 + AT_rich Low_complexity Low_complexity 1 21 0 3963 178 13 37 chr15 72432106 72432866 -13262888 - MER57A-int LTR ERV1 -6795 742 1 3675 107 29 0 chr15 72432883 72433398 -13262356 - L1P LINE L1 -5085 1061 532 8432 49 0 0 chr15 72433398 72435217 -13260537 + L1PA5 LINE L1 4338 6154 0 2017 177 12 48 chr15 72435226 72435639 -13260115 - MER57A LTR ERV1 -4 399 2 1565 176 72 0 chr15 72435814 72436093 -13259661 + AluJo SINE Alu 1 299 -13 929 252 19 0 chr15 72436248 72436462 -13259292 - MIR SINE MIR -36 226 9 343 250 102 39 chr15 72436543 72436671 -13259083 - L2 LINE L2 0 3272 3137 195 269 74 74 chr15 72436735 72436843 -13258911 - MIR SINE MIR -82 180 73 866 323 40 6 chr15 72437110 72437457 -13258297 - L1MC4a LINE L1 -1961 5847 5489 263 138 138 15 chr15 72437788 72437853 -13257901 + MIR SINE MIR 69 141 -121 1016 280 23 13 chr15 72438031 72438335 -13257419 + LTR16C LTR ERVL 185 491 0 1502 158 16 33 chr15 72438693 72438830 -13256924 - L1MB3 LINE L1 0 6183 6045 1967 155 0 0 chr15 72438830 72439134 -13256620 - AluSx SINE Alu -8 304 1 1502 158 16 33 chr15 72439134 72439299 -13256455 - L1MB3 LINE L1 -138 6045 5886 277 170 64 0 chr15 72439418 72439465 -13256289 + LTR16C LTR ERVL 442 491 0 208 402 26 17 chr15 72440294 72440411 -13255343 + MIR3 SINE MIR 82 199 -9 1593 181 0 10 chr15 72441254 72441558 -13254196 - AluJo SINE Alu -11 301 1 296 224 37 84 chr15 72441803 72441910 -13253844 + L2 LINE L2 2370 2471 -843 409 272 24 119 chr15 72442164 72442576 -13253178 + L2 LINE L2 2687 3054 -218 307 308 32 32 chr15 72443814 72443970 -13251784 - MIR SINE MIR -12 250 95 4045 122 154 22 chr15 72444001 72444728 -13251026 - LTR12 LTR ERV1 0 826 4 1497 160 34 49 chr15 72444748 72445299 -13250455 - pTR5 LTR ERV1 -1124 1314 733 180 0 0 0 chr15 72446630 72446650 -13249104 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1045 185 162 71 chr15 72446662 72447002 -13248752 + L1MB3 LINE L1 5415 5785 -398 2560 97 5 35 chr15 72447006 72447352 -13248402 + L1PB2 LINE L1 5762 6096 -55 2045 115 0 0 chr15 72447352 72447647 -13248107 + AluSx SINE Alu 1 295 -17 2560 97 5 35 chr15 72447647 72447701 -13248053 + L1PB2 LINE L1 6096 6150 -1 1283 199 81 60 chr15 72447751 72447765 -13247989 + L1MB3 LINE L1 5772 5784 -399 279 0 0 0 chr15 72447765 72447796 -13247958 + (CA)n Simple_repeat Simple_repeat 2 32 0 1283 199 81 60 chr15 72447796 72448178 -13247576 + L1MB3 LINE L1 5784 6176 -7 609 158 0 0 chr15 72449823 72449924 -13245830 + FRAM SINE Alu 67 167 -9 261 83 0 0 chr15 72449943 72449979 -13245775 + (A)n Simple_repeat Simple_repeat 1 36 0 205 154 26 0 chr15 72450218 72450257 -13245497 + L2 LINE L2 3214 3253 -19 461 252 116 7 chr15 72450356 72450503 -13245251 - MIR SINE MIR 0 262 100 858 271 114 24 chr15 72450503 72450916 -13244838 - MLT1J2 LTR MaLR 0 450 1 346 350 10 0 chr15 72450919 72451019 -13244735 - MIR SINE MIR -161 101 1 1354 240 111 28 chr15 72451031 72451489 -13244265 + MLT1G LTR MaLR 1 496 -94 2048 96 0 0 chr15 72451632 72451927 -13243827 + AluSq SINE Alu 14 308 0 2182 112 0 0 chr15 72452414 72452718 -13243036 - AluSx SINE Alu -8 304 1 190 196 0 54 chr15 72452998 72453054 -13242700 - L2 LINE L2 -49 3264 3212 601 280 133 32 chr15 72453486 72453809 -13241945 - L2 LINE L2 -83 3230 2941 1989 144 16 45 chr15 72453809 72454185 -13241569 + MLT1A1 LTR MaLR 1 365 0 601 280 133 32 chr15 72454185 72454322 -13241432 - L2 LINE L2 -372 2941 2644 2069 143 135 5 chr15 72454328 72454707 -13241047 - MSTA LTR MaLR 0 428 1 1913 120 36 4 chr15 72454745 72455041 -13240713 + AluSx SINE Alu 1 305 0 817 303 31 79 chr15 72455055 72455597 -13240157 + L1ME LINE L1 894 1409 -5538 2083 131 13 7 chr15 72455699 72456005 -13239749 - AluSx SINE Alu -2 310 3 180 0 0 0 chr15 72456009 72456029 -13239725 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1382 112 0 5 chr15 72456035 72456240 -13239514 - L1PB1 LINE L1 -1 6150 5947 2819 207 9 12 chr15 72456261 72456913 -13238841 - L1 LINE L1 -1016 5130 4481 488 242 26 78 chr15 72457140 72457309 -13238445 + L1ME LINE L1 1355 1531 -5416 2105 126 3 0 chr15 72457309 72457602 -13238152 + AluSx SINE Alu 1 294 -18 488 242 26 78 chr15 72457602 72457847 -13237907 + L1ME LINE L1 1531 1852 -5095 314 206 68 0 chr15 72457914 72457987 -13237767 - LTR33 LTR ERVL -152 369 292 311 281 141 8 chr15 72457991 72458119 -13237635 - LTR33 LTR ERVL -333 188 44 325 332 44 22 chr15 72458194 72458510 -13237244 + HAL1b LINE L1 349 671 -677 34 24 0 0 chr15 72458521 72458562 -13237192 + AT_rich Low_complexity Low_complexity 1 41 0 326 218 36 79 chr15 72459197 72459362 -13236392 + L1ME4a LINE L1 5964 6121 0 517 195 25 17 chr15 72459374 72459492 -13236262 + L1MA10 LINE L1 6216 6334 0 313 267 65 51 chr15 72459522 72459739 -13236015 + L1MC5 LINE L1 7357 7576 -385 225 94 0 0 chr15 72460056 72460088 -13235666 + (A)n Simple_repeat Simple_repeat 1 32 0 1250 246 31 8 chr15 72460207 72460560 -13235194 - MER57B LTR ERV1 0 434 74 2313 98 3 0 chr15 72460564 72460861 -13234893 - AluSq SINE Alu -15 298 1 198 0 0 0 chr15 72460873 72460895 -13234859 + (T)n Simple_repeat Simple_repeat 1 22 0 887 146 0 0 chr15 72461285 72461415 -13234339 - FLAM_C SINE Alu -1 132 3 2122 133 0 3 chr15 72461445 72461745 -13234009 - AluSx SINE Alu -13 299 1 289 212 81 20 chr15 72462173 72462272 -13233482 - HAL1 LINE L1 -171 2336 2232 1482 215 70 45 chr15 72462276 72462722 -13233032 + MLT1C LTR MaLR 6 462 -5 2328 84 3 7 chr15 72462786 72463085 -13232669 - AluSx SINE Alu -14 298 1 917 112 0 0 chr15 72463197 72463322 -13232432 + AluSq/x SINE Alu 3 127 -185 1385 144 0 31 chr15 72463322 72463544 -13232210 + AluSg/x SINE Alu 70 284 -26 2240 114 0 0 chr15 72463963 72464260 -13231494 - AluSx SINE Alu -15 297 1 22 0 0 0 chr15 72464476 72464498 -13231256 + AT_rich Low_complexity Low_complexity 1 22 0 1186 103 0 0 chr15 72464660 72464816 -13230938 - L1PA10 LINE L1 -10 6158 6003 1441 176 3 86 chr15 72464881 72465019 -13230735 + AluJo SINE Alu 1 102 -210 2400 95 0 0 chr15 72465019 72465315 -13230439 - AluSx SINE Alu -16 296 1 1441 176 3 86 chr15 72465315 72465478 -13230276 + AluJo SINE Alu 102 277 -35 2213 106 88 15 chr15 72466428 72466767 -13228987 + THE1B LTR MaLR 1 364 0 1545 211 14 0 chr15 72466915 72467037 -13228717 + AluJb SINE Alu 1 120 -192 279 0 0 0 chr15 72467037 72467068 -13228686 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1545 211 14 0 chr15 72467068 72467230 -13228524 + AluJb SINE Alu 120 289 -23 2150 125 3 10 chr15 72467260 72467571 -13228183 + AluSg SINE Alu 2 310 0 463 293 48 93 chr15 72468093 72468190 -13227564 + MER110-int LTR ERV1 131 231 -4416 1977 156 0 0 chr15 72468190 72468485 -13227269 + AluSx SINE Alu 1 295 -17 463 293 48 93 chr15 72468485 72468827 -13226927 + MER110-int LTR ERV1 231 550 -4097 768 195 0 8 chr15 72468852 72468980 -13226774 - FLAM_C SINE Alu -14 129 3 2270 110 0 16 chr15 72469045 72469355 -13226399 + AluSx SINE Alu 1 305 -7 788 71 0 0 chr15 72469358 72469456 -13226298 + L1P LINE L1 1 98 -6048 * 22643 62 2 5 chr15 72469454 72472368 -13223386 + L1P LINE L1 623 3530 -2616 4536 224 32 49 chr15 72472469 72472528 -13223226 - L1M4 LINE L1 -2231 3915 3857 180 0 0 0 chr15 72472528 72472548 -13223206 + (TTG)n Simple_repeat Simple_repeat 1 20 0 2353 58 0 34 chr15 72472548 72472837 -13222917 - AluY SINE Alu -32 279 1 4536 224 32 49 chr15 72472837 72473560 -13222194 - L1M4 LINE L1 -2288 3858 3124 1941 146 23 7 chr15 72473560 72473861 -13221893 - AluJb SINE Alu -6 306 1 4536 224 32 49 chr15 72473861 72473969 -13221785 - L1M4 LINE L1 -3022 3124 3016 2513 64 0 10 chr15 72473969 72474281 -13221473 - AluY SINE Alu -2 309 1 4536 224 32 49 chr15 72474281 72474380 -13221374 - L1M4 LINE L1 -3130 3016 2917 6327 48 5 5 chr15 72474380 72475148 -13220606 + L1PA6 LINE L1 5382 6149 -5 243 0 0 0 chr15 72475148 72475175 -13220579 + (TA)n Simple_repeat Simple_repeat 1 27 0 4536 224 32 49 chr15 72475175 72475698 -13220056 - L1M4 LINE L1 -3227 2919 2430 2053 144 0 26 chr15 72475706 72476012 -13219742 - AluJb SINE Alu -14 298 1 291 257 20 61 chr15 72476258 72476406 -13219348 + HAL1b LINE L1 746 887 -461 3179 154 88 36 chr15 72476529 72477197 -13218557 + L1MC3 LINE L1 6368 7070 -715 2273 103 0 16 chr15 72477198 72477509 -13218245 + AluSx SINE Alu 1 306 -6 309 286 10 10 chr15 72477536 72477634 -13218120 + MLT1F1 LTR MaLR 24 121 -446 * 352 143 18 0 chr15 72477626 72477682 -13218072 + AluSg/x SINE Alu 189 245 -57 500 278 68 11 chr15 72477693 72477884 -13217870 - MIR SINE MIR -7 255 54 1925 157 3 3 chr15 72477898 72478203 -13217551 + AluSx SINE Alu 1 305 -7 230 197 14 84 chr15 72479159 72479230 -13216524 + MIR SINE MIR 118 183 -79 1175 251 86 52 chr15 72479282 72479578 -13216176 - MLT1H1 LTR MaLR 0 555 270 2401 84 0 0 chr15 72479578 72479877 -13215877 - AluY SINE Alu -12 299 1 1175 251 86 52 chr15 72479877 72480058 -13215696 - MLT1H1 LTR MaLR -285 270 56 1713 193 3 3 chr15 72480058 72480359 -13215395 - AluJo SINE Alu -11 301 1 1175 251 86 52 chr15 72480359 72480413 -13215341 - MLT1H1 LTR MaLR -499 56 5 735 297 12 59 chr15 72480725 72480912 -13214842 - MER110 LTR ERV1 0 491 326 2210 101 11 0 chr15 72480912 72481199 -13214555 + AluSx SINE Alu 1 290 -22 735 297 12 59 chr15 72481199 72481348 -13214406 - MER110 LTR ERV1 -165 326 171 231 221 35 81 chr15 72481421 72481507 -13214247 - MER110A LTR ERV1 -292 176 95 2117 115 7 0 chr15 72481772 72482060 -13213694 - AluSg SINE Alu -20 290 1 404 264 38 0 chr15 72482277 72482383 -13213371 - MIR SINE MIR 0 262 153 916 215 110 19 chr15 72482773 72482982 -13212772 + LTR16A LTR ERVL 223 450 0 237 33 0 0 chr15 72483020 72483050 -13212704 + (TG)n Simple_repeat Simple_repeat 1 30 0 2152 100 7 0 chr15 72483050 72483330 -13212424 - AluSq SINE Alu -31 282 1 2473 83 0 3 chr15 72483424 72483736 -13212018 + AluY SINE Alu 1 311 0 2462 242 97 23 chr15 72483752 72484054 -13211700 + L1M4 LINE L1 4011 4289 -1857 1477 186 0 4 chr15 72484054 72484317 -13211437 - AluJb SINE Alu -15 297 36 2462 242 97 23 chr15 72484317 72484626 -13211128 + L1M4 LINE L1 4289 4574 -1572 2212 97 3 3 chr15 72484626 72484915 -13210839 + AluSp SINE Alu 1 289 -24 2462 242 97 23 chr15 72484915 72485471 -13210283 + L1M4 LINE L1 4574 5332 -814 2212 111 0 3 chr15 72485472 72485761 -13209993 + AluSp SINE Alu 1 288 -25 2227 106 3 0 chr15 72485794 72486087 -13209667 + AluSp SINE Alu 1 294 -19 1048 135 0 13 chr15 72486097 72486292 -13209462 + AluSg/x SINE Alu 136 312 0 5610 112 18 8 chr15 72486292 72486739 -13209015 + L1PA16 LINE L1 5323 5783 -383 2307 110 0 3 chr15 72486739 72487047 -13208707 + AluSp SINE Alu 1 307 -6 5610 112 18 8 chr15 72487047 72487430 -13208324 + L1PA16 LINE L1 5783 6161 -5 2286 89 3 7 chr15 72487498 72487789 -13207965 + AluSq SINE Alu 1 290 -23 1078 91 7 7 chr15 72487808 72487951 -13207803 + AluSp SINE Alu 1 143 -170 33 0 0 0 chr15 72487973 72488006 -13207748 + AT_rich Low_complexity Low_complexity 1 33 0 483 55 68 0 chr15 72488013 72488086 -13207668 + L1PA15 LINE L1 6086 6163 -2 280 146 0 0 chr15 72488109 72488150 -13207604 - L1P4 LINE L1 -296 5870 5830 520 240 52 13 chr15 72488158 72488312 -13207442 + L1MB5 LINE L1 4963 5122 -1024 2042 190 30 28 chr15 72488314 72488406 -13207348 + L1MB5 LINE L1 5736 5826 -348 2205 117 0 0 chr15 72488406 72488704 -13207050 + AluSq SINE Alu 1 298 -15 2042 190 30 28 chr15 72488704 72489043 -13206711 + L1MB5 LINE L1 5826 6168 -6 262 139 28 28 chr15 72489637 72489709 -13206045 + (CCG)n Simple_repeat Simple_repeat 3 74 0 382 303 7 41 chr15 72490168 72490237 -13205517 + L3 LINE CR1 1404 1467 -110 2417 80 0 3 chr15 72490237 72490539 -13205215 + AluY SINE Alu 1 301 -10 382 303 7 41 chr15 72490539 72490614 -13205140 + L3 LINE CR1 1467 1543 -34 220 270 40 60 chr15 72490726 72490759 -13204995 - MIR SINE MIR -87 175 143 1311 190 25 101 chr15 72490759 72491154 -13204600 - MLT1A1 LTR MaLR 0 365 1 220 270 40 60 chr15 72491154 72491220 -13204534 - MIR SINE MIR -119 143 78 257 358 90 0 chr15 72491339 72491473 -13204281 + MIR3 SINE MIR 2 147 -61 222 190 35 0 chr15 72491752 72491810 -13203944 + A-rich Low_complexity Low_complexity 5 64 0 2246 116 7 0 chr15 72491836 72492138 -13203616 + AluSx SINE Alu 1 304 -8 1958 268 70 77 chr15 72542336 72543198 -13152556 + L1ME LINE L1 3 917 -5153 302 150 0 50 chr15 72543198 72543258 -13152496 + Alu SINE Alu 244 300 -2 1958 268 70 77 chr15 72543258 72543429 -13152325 + L1ME LINE L1 917 1088 -4982 233 167 0 37 chr15 72543437 72543491 -13152263 - Alu SINE Alu 0 300 249 320 187 4 0 chr15 72543563 72543622 -13152132 + Alu SINE Alu 1 45 -258 1993 163 64 11 chr15 72543722 72544079 -13151675 - MSTA LTR MaLR -52 376 1 297 0 0 0 chr15 72544091 72544124 -13151630 + (TC)n Simple_repeat Simple_repeat 2 34 0 253 278 68 74 chr15 72544414 72544590 -13151164 - MIR SINE MIR -55 207 33 514 185 237 0 chr15 72544619 72544754 -13151000 - MER96B DNA MER1_type? 0 417 251 2216 100 0 0 chr15 72544755 72545065 -13150689 - AluSg SINE Alu 0 310 1 1757 141 0 10 chr15 72545074 72545365 -13150389 - AluJb SINE Alu -24 288 1 2285 40 40 10 chr15 72545415 72545711 -13150043 - AluY SINE Alu -6 305 1 1221 167 19 84 chr15 72545865 72546188 -13149566 - AluJo SINE Alu -10 302 1 187 300 22 22 chr15 72546226 72546316 -13149438 - MIR SINE MIR -172 90 1 333 307 62 45 chr15 72547580 72547756 -13147998 + L1MC4a LINE L1 6058 6236 -1572 2142 120 0 13 chr15 72547866 72548045 -13147709 - AluSx SINE Alu 0 312 137 2237 91 0 3 chr15 72548045 72548342 -13147412 - AluSc SINE Alu -13 296 1 2142 120 0 13 chr15 72548342 72548478 -13147276 - AluSx SINE Alu -175 137 1 1279 234 53 24 chr15 72548499 72548875 -13146879 - L1ME1 LINE L1 -4 6162 5776 815 189 133 5 chr15 72548876 72549072 -13146682 - L1ME1 LINE L1 -516 5650 5430 1914 123 30 0 chr15 72549073 72549374 -13146380 - AluSx SINE Alu -2 310 1 870 278 28 4 chr15 72549380 72549632 -13146122 - L1MEc LINE L1 -6011 385 128 2051 123 7 0 chr15 72549636 72549945 -13145809 - AluSx SINE Alu -1 311 1 1999 141 3 3 chr15 72549959 72550271 -13145483 - AluSx SINE Alu 0 312 1 1880 152 16 52 chr15 72550273 72550582 -13145172 - L1MB1 LINE L1 -217 5972 5653 1991 89 52 7 chr15 72550582 72550873 -13144881 - AluSp SINE Alu -9 304 1 2223 96 0 3 chr15 72550880 72551182 -13144572 - AluSx SINE Alu -11 301 1 1880 152 16 52 chr15 72551182 72551245 -13144509 - L1MB1 LINE L1 -542 5647 5606 821 174 70 6 chr15 72551245 72551417 -13144337 - AluJ SINE Alu -9 303 121 454 161 37 0 chr15 72551449 72551530 -13144224 - AluJ SINE Alu -178 134 51 2131 97 0 3 chr15 72551772 72552070 -13143684 + AluY SINE Alu 9 305 -6 1440 136 101 0 chr15 72552401 72552658 -13143096 + AluSx SINE Alu 1 283 -29 487 129 0 43 chr15 72552729 72552822 -13142932 - AluJ/FRAM SINE Alu -3 309 221 2271 202 87 98 chr15 72553165 72553465 -13142289 - L1M4 LINE L1 -2801 3345 3043 2111 101 0 28 chr15 72553465 72553783 -13141971 - AluSg SINE Alu -1 309 1 2271 202 87 98 chr15 72553783 72553794 -13141960 - L1M4 LINE L1 -3103 3043 3033 2036 130 0 13 chr15 72553794 72554102 -13141652 - AluSx SINE Alu -8 304 1 2271 202 87 98 chr15 72554102 72554195 -13141559 - L1M4 LINE L1 -3113 3033 2940 837 181 0 0 chr15 72554195 72554328 -13141426 - FLAM_C SINE Alu 0 133 1 2271 202 87 98 chr15 72554328 72554743 -13141011 - L1M4 LINE L1 -3206 2940 2522 2148 86 10 0 chr15 72554743 72555034 -13140720 + AluY SINE Alu 3 296 -15 2271 202 87 98 chr15 72555034 72555047 -13140707 - L1M4 LINE L1 -3624 2522 2510 2064 114 0 10 chr15 72555047 72555336 -13140418 + AluSx SINE Alu 1 288 -24 207 32 32 0 chr15 72555336 72555367 -13140387 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2271 202 87 98 chr15 72555374 72555528 -13140226 - L1M4 LINE L1 -3636 2510 2366 1103 217 0 0 chr15 72555529 72555727 -13140027 + MSTB LTR MaLR 1 198 -228 961 116 0 0 chr15 72555729 72555858 -13139896 + AluSg/x SINE Alu 85 213 -99 2057 94 8 0 chr15 72555906 72556171 -13139583 + AluSp SINE Alu 1 267 -46 679 126 0 0 chr15 72556271 72556366 -13139388 + AluSp/q SINE Alu 204 298 -15 433 159 48 103 chr15 72556366 72556416 -13139338 - L1 LINE L1 -832 5314 5263 1869 168 7 0 chr15 72556416 72556720 -13139034 - AluSx SINE Alu 0 306 1 433 159 48 103 chr15 72556720 72556794 -13138960 - L1 LINE L1 -883 5263 5196 237 132 0 0 chr15 72556794 72556832 -13138922 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 1376 167 16 32 chr15 72556835 72557087 -13138667 - AluSx SINE Alu -20 292 45 1129 97 0 0 chr15 72557087 72557231 -13138523 + AluSg/x SINE Alu 140 283 -29 403 328 48 28 chr15 72557257 72557507 -13138247 - LTR16C LTR ERVL 0 491 237 423 298 47 12 chr15 72557708 72557879 -13137875 - HAL1 LINE L1 -1681 826 650 1094 132 12 0 chr15 72557880 72558047 -13137707 + AluSg/x SINE Alu 135 303 -7 1273 204 204 62 chr15 72558192 72558629 -13137125 - HAL1 LINE L1 -2005 502 4 317 265 10 39 chr15 72558633 72558735 -13137019 + L2 LINE L2 2972 3070 -243 1116 139 6 0 chr15 72558773 72558939 -13136815 - AluSg/x SINE Alu -11 301 135 556 237 8 30 chr15 72558943 72559074 -13136680 + L2 LINE L2 3165 3292 -21 1547 152 0 47 chr15 72559858 72560135 -13135619 + AluJo SINE Alu 32 295 -17 21 0 0 0 chr15 72560139 72560160 -13135594 + AT_rich Low_complexity Low_complexity 1 21 0 2156 120 7 7 chr15 72560161 72560460 -13135294 + AluSx SINE Alu 1 299 -13 410 246 118 64 chr15 72561355 72561558 -13134196 + MIR SINE MIR 32 245 -17 274 209 15 30 chr15 72561976 72562043 -13133711 + MIR SINE MIR 38 103 -105 204 239 0 33 chr15 72563298 72563390 -13132364 + (CGGG)n Simple_repeat Simple_repeat 3 91 0 180 77 0 0 chr15 72563400 72563426 -13132328 + (CCG)n Simple_repeat Simple_repeat 3 28 0 309 292 71 106 chr15 72563528 72563895 -13131859 - L1M2 LINE L1 -5676 1173 820 348 244 76 96 chr15 72563930 72564127 -13131627 - L1M2 LINE L1 -5901 948 756 25 31 0 0 chr15 72564814 72564846 -13130908 + AT_rich Low_complexity Low_complexity 1 32 0 1753 102 0 53 chr15 72569864 72570130 -13125624 + AluSx SINE Alu 2 253 -59 2829 10 0 0 chr15 72570798 72571104 -13124650 - AluYb8 SINE Alu -12 306 1 1907 141 13 13 chr15 72571277 72571582 -13124172 - AluSx SINE Alu -7 305 1 791 125 0 0 chr15 72571756 72571860 -13123894 - AluSx SINE Alu -15 297 194 1074 106 0 0 chr15 72571861 72572002 -13123752 - AluSx SINE Alu -172 141 1 572 233 61 25 chr15 72572942 72573105 -13122649 + MER58A DNA MER1_type 48 216 -8 25 31 0 0 chr15 72573211 72573243 -13122511 + AT_rich Low_complexity Low_complexity 1 32 0 2124 128 7 0 chr15 72573422 72573727 -13122027 - AluSx SINE Alu -5 307 1 222 204 0 20 chr15 72573995 72574044 -13121710 + L2 LINE L2 3262 3309 -4 2224 116 0 0 chr15 72574464 72574767 -13120987 - AluSq SINE Alu -10 303 1 2114 114 3 7 chr15 72575246 72575545 -13120209 + AluSg SINE Alu 1 298 -12 680 212 8 23 chr15 72575550 72575682 -13120072 + FLAM_A SINE Alu 1 130 -3 296 238 189 0 chr15 72576213 72576335 -13119419 - MIR SINE MIR 0 262 118 198 0 0 0 chr15 72577711 72577733 -13118021 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr15 72584854 72584877 -13110877 + GC_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr15 72586809 72586834 -13108920 + (TC)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr15 72587230 72587250 -13108504 + (T)n Simple_repeat Simple_repeat 1 20 0 359 305 61 0 chr15 72588205 72588336 -13107418 + MIR SINE MIR 122 260 -2 216 0 0 0 chr15 72588569 72588593 -13107161 + (T)n Simple_repeat Simple_repeat 1 24 0 188 284 0 60 chr15 72589052 72589119 -13106635 + MER5B DNA MER1_type 38 100 -78 1888 141 30 7 chr15 72589402 72589706 -13106048 + AluSx SINE Alu 1 311 -1 252 189 0 0 chr15 72590075 72590112 -13105642 - Alu SINE Alu -264 37 1 919 183 115 11 chr15 72590191 72590382 -13105372 - AluJb SINE Alu -101 211 1 251 193 0 18 chr15 72590455 72590505 -13105249 - MIR SINE MIR -11 251 201 294 95 0 0 chr15 72590505 72590547 -13105207 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 182 0 9 chr15 72590578 72590798 -13104956 - AluJb SINE Alu -19 293 76 1919 145 0 10 chr15 72590965 72591261 -13104493 - AluSx SINE Alu -19 293 1 1819 154 112 6 chr15 72591363 72591675 -13104079 - MER7A DNA MER2_type 0 346 4 426 262 248 0 chr15 72591815 72591964 -13103790 - MIR SINE MIR -44 218 33 1869 137 11 0 chr15 72592021 72592298 -13103456 + AluSx SINE Alu 1 280 -32 1106 126 0 0 chr15 72592938 72593089 -13102665 - AluSg/x SINE Alu -28 282 132 2055 78 0 72 chr15 72593089 72593415 -13102339 - AluSg SINE Alu 0 310 1 315 331 37 37 chr15 72593605 72593768 -13101986 - MER5A DNA MER1_type -6 183 21 287 245 112 10 chr15 72593808 72593906 -13101848 + MIR SINE MIR 64 171 -91 706 237 74 11 chr15 72593942 72594132 -13101622 + MER20 DNA MER1_type 1 202 -17 1799 164 17 3 chr15 72594139 72594431 -13101323 + AluJo SINE Alu 1 296 -16 1240 141 112 3 chr15 72595276 72595677 -13100077 - LTR54B LTR ERV1 -2 496 1 2398 65 10 0 chr15 72595845 72596136 -13099618 - AluY SINE Alu -17 294 1 307 287 86 49 chr15 72596260 72596289 -13099465 - L1ME2 LINE L1 -295 5869 5843 3946 73 42 70 chr15 72596289 72596906 -13098848 + MER4A LTR ERV1 1 600 0 307 287 86 49 chr15 72596906 72597120 -13098634 - L1ME2 LINE L1 -321 5843 5617 2024 133 0 3 chr15 72597123 72597417 -13098337 - AluSc SINE Alu -16 293 1 335 233 119 67 chr15 72597558 72597751 -13098003 - L1ME2 LINE L1 -762 5384 5182 2243 112 0 6 chr15 72597842 72598155 -13097599 + AluSx SINE Alu 1 311 -1 300 265 0 59 chr15 72599324 72599426 -13096328 - L1MC4 LINE L1 -1333 6709 6614 1981 126 11 0 chr15 72599435 72599721 -13096033 - AluSq SINE Alu -24 289 1 502 78 0 0 chr15 72599732 72599796 -13095958 - Alu SINE Alu -17 292 229 2164 106 7 3 chr15 72599963 72600256 -13095498 - AluY SINE Alu -17 294 1 271 221 107 25 chr15 72600866 72600988 -13094766 + L1ME LINE L1 5660 5791 -330 404 266 87 60 chr15 72602736 72602954 -13092800 + MIR SINE MIR 20 243 -19 244 342 45 27 chr15 72603669 72603780 -13091974 + MER5B DNA MER1_type 64 176 -2 1780 186 7 3 chr15 72603829 72604136 -13091618 - AluJb SINE Alu -4 308 1 2236 109 0 0 chr15 72604138 72604440 -13091314 - AluSc SINE Alu -7 302 1 211 254 149 44 chr15 72604509 72604623 -13091131 + MIR SINE MIR 29 154 -108 2078 133 0 7 chr15 72605376 72605677 -13090077 - AluSx SINE Alu -13 299 1 1642 170 4 4 chr15 72606565 72606835 -13088919 - AluJo SINE Alu -29 283 18 223 309 167 24 chr15 72607351 72607477 -13088277 - MER5B DNA MER1_type -31 147 4 888 218 61 0 chr15 72609163 72609360 -13086394 - MER3 DNA MER1_type 0 209 1 239 292 68 68 chr15 72610448 72610609 -13085145 + MIR SINE MIR 85 245 -17 1457 184 44 11 chr15 72611001 72611293 -13084461 - AluJo SINE Alu 0 301 1 763 218 54 129 chr15 72611845 72611967 -13083787 - L1MC4 LINE L1 -14 8028 7898 1614 166 22 7 chr15 72611967 72612245 -13083509 - AluJo SINE Alu -30 282 1 763 218 54 129 chr15 72612245 72612433 -13083321 - L1MC4 LINE L1 -144 7898 7697 2260 91 0 3 chr15 72612433 72612731 -13083023 - AluSc SINE Alu -12 297 1 763 218 54 129 chr15 72612731 72612862 -13082892 - L1MC4 LINE L1 -345 7697 7628 2519 67 0 3 chr15 72612862 72613189 -13082565 - L1PA5 LINE L1 0 6154 5829 763 218 54 129 chr15 72613189 72613264 -13082490 - L1MC4 LINE L1 -414 7628 7549 1893 119 58 0 chr15 72613333 72613611 -13082143 - AluSx SINE Alu -18 294 1 784 174 68 37 chr15 72613613 72613774 -13081980 - FRAM SINE Alu -11 165 1 363 243 140 0 chr15 72613818 72613925 -13081829 + Charlie8 DNA MER1_type 48 169 -2248 1677 177 10 16 chr15 72614170 72614475 -13081279 - AluJo SINE Alu -9 303 1 244 284 68 11 chr15 72615504 72615592 -13080162 + MIR3 SINE MIR 85 177 -31 2460 67 0 6 chr15 72615592 72615905 -13079849 - AluY SINE Alu 0 311 1 485 200 112 8 chr15 72617290 72617415 -13078339 + MER5A DNA MER1_type 2 139 -50 288 217 24 72 chr15 72617420 72617437 -13078317 + MER5A DNA MER1_type 111 127 -62 1276 200 14 58 chr15 72617437 72617732 -13078022 - AluJo SINE Alu -30 282 1 288 217 24 72 chr15 72617732 72617797 -13077957 + MER5A DNA MER1_type 127 189 0 1628 206 49 5 chr15 72618710 72619078 -13076676 + MER58D DNA MER1_type 3 386 0 411 296 193 22 chr15 72619476 72619834 -13075920 - L1MC4a LINE L1 -1831 5977 5559 356 261 196 7 chr15 72619929 72620067 -13075687 + MER5A DNA MER1_type 26 189 0 285 259 26 52 chr15 72619966 72620082 -13075672 - MER5A DNA MER1_type -76 113 1 * 1665 168 34 10 chr15 72620741 72621033 -13074721 + AluJo SINE Alu 1 299 -13 201 338 38 0 chr15 72621125 72621205 -13074549 - MIR SINE MIR -70 138 56 327 149 28 0 chr15 72621321 72621428 -13074326 + (TA)n Simple_repeat Simple_repeat 1 110 0 332 292 11 0 chr15 72621428 72621517 -13074237 + L1MC4 LINE L1 6613 6702 -1340 333 102 0 0 chr15 72621518 72621577 -13074177 + (TA)n Simple_repeat Simple_repeat 2 60 0 2059 95 28 0 chr15 72621578 72621861 -13073893 - AluSg SINE Alu -19 291 1 186 143 0 0 chr15 72622962 72622997 -13072757 + (T)n Simple_repeat Simple_repeat 1 35 0 350 303 188 18 chr15 72623861 72624026 -13071728 - MIR SINE MIR -64 198 6 2100 248 134 21 chr15 72625194 72625947 -13069807 - L2 LINE L2 -772 2542 1705 2184 105 0 20 chr15 72625950 72626256 -13069498 - AluSx SINE Alu -1 311 12 2133 110 0 4 chr15 72627042 72627355 -13068399 - AluSx SINE Alu 0 314 3 773 176 0 0 chr15 72627386 72627517 -13068237 + FLAM_A SINE Alu 1 131 -2 2331 50 7 27 chr15 72629121 72629419 -13066335 + AluY SINE Alu 1 292 -19 3144 145 37 48 chr15 72630305 72630924 -13064830 - LTR10E LTR ERV1 -21 612 1 1291 177 5 5 chr15 72631127 72631336 -13064418 + AluJb SINE Alu 88 296 -16 215 319 28 14 chr15 72631628 72631700 -13064054 - MIR3 SINE MIR -54 154 82 2255 112 0 0 chr15 72631737 72632040 -13063714 - AluSx SINE Alu -9 303 1 3143 108 57 9 chr15 72632829 72633283 -13062471 - MER1A DNA MER1_type -1 528 53 383 288 93 42 chr15 72634716 72634952 -13060802 - MIR SINE MIR -10 252 5 625 341 138 12 chr15 72637692 72638207 -13057547 + L2 LINE L2 2733 3313 0 24 32 0 0 chr15 72638241 72638272 -13057482 + AT_rich Low_complexity Low_complexity 1 31 0 2539 224 118 3 chr15 72638272 72639000 -13056754 - L1MB7 LINE L1 -54 6199 5388 813 82 82 8 chr15 72639007 72639129 -13056625 - MER85 DNA T2_type -8 131 1 6766 237 101 47 chr15 72639136 72639218 -13056536 - L1MB7 LINE L1 -830 5385 5309 1829 175 31 8 chr15 72639218 72639573 -13056181 + MER47A DNA MER2_type 4 366 0 6766 237 101 47 chr15 72639573 72640055 -13055699 - L1MB7 LINE L1 -906 5309 4854 2168 114 3 7 chr15 72640055 72640361 -13055393 - AluSx SINE Alu -7 305 1 6766 237 101 47 chr15 72640361 72641275 -13054479 - L1MB7 LINE L1 -1361 4854 3991 2035 135 0 28 chr15 72641275 72641593 -13054161 - AluSx SINE Alu -3 309 1 6766 237 101 47 chr15 72641593 72641975 -13053779 - L1MB7 LINE L1 -2224 3991 3631 1656 168 3 46 chr15 72641975 72642279 -13053475 - AluJo SINE Alu -19 293 3 6766 237 101 47 chr15 72642279 72642441 -13053313 - L1MB7 LINE L1 -2584 3631 3479 2192 95 16 3 chr15 72642441 72642746 -13053008 - AluSq SINE Alu -2 311 3 6766 237 101 47 chr15 72642746 72644227 -13051527 - L1MB7 LINE L1 -2736 3479 1712 21 0 0 0 chr15 72645781 72645802 -13049952 + AT_rich Low_complexity Low_complexity 1 21 0 2326 66 0 30 chr15 72645844 72646145 -13049609 + AluY SINE Alu 2 293 -18 404 270 36 0 chr15 72646171 72646282 -13049472 - MER58B DNA MER1_type -26 315 201 2407 94 7 0 chr15 72646623 72646932 -13048822 - AluSx SINE Alu -1 311 1 2220 105 7 3 chr15 72647293 72647587 -13048167 + AluSx SINE Alu 3 297 -15 1298 72 0 18 chr15 72648289 72648456 -13047298 - AluSp SINE Alu -114 199 36 2234 191 84 77 chr15 72648721 72648903 -13046851 - L1MC5 LINE L1 -398 7563 7384 973 107 0 0 chr15 72648903 72649034 -13046720 + FLAM_C SINE Alu 2 132 -1 2234 191 84 77 chr15 72649034 72649699 -13046055 - L1MC5 LINE L1 -577 7384 6710 300 203 14 0 chr15 72649709 72649783 -13045971 - MER45R DNA AcHobo -104 1477 1403 279 200 33 0 chr15 72649857 72649917 -13045837 + MLT1K LTR MaLR 525 586 -2 293 167 0 0 chr15 72650213 72650267 -13045487 - L1MC5 LINE L1 -1239 6722 6669 644 93 0 0 chr15 72650470 72650556 -13045198 - AluSg/x SINE Alu -8 302 217 25 21 0 43 chr15 72650860 72650875 -13044879 + AT_rich Low_complexity Low_complexity 1 15 -30 2157 100 3 3 chr15 72650875 72651164 -13044590 - AluSp SINE Alu -24 289 1 25 21 0 43 chr15 72651164 72651195 -13044559 + AT_rich Low_complexity Low_complexity 15 45 0 738 231 85 34 chr15 72651197 72651491 -13044263 - L1MC5 LINE L1 -1812 5996 5688 964 172 121 28 chr15 72651828 72652043 -13043711 - MER46A DNA MER2_type 0 236 2 227 206 21 21 chr15 72652065 72652162 -13043592 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 2827 3 0 0 chr15 72653232 72653535 -13042219 + AluYa5 SINE Alu 1 303 -8 25 0 0 0 chr15 72655071 72655096 -13040658 + AT_rich Low_complexity Low_complexity 1 25 0 187 206 0 0 chr15 72656368 72656402 -13039352 - MER5B DNA MER1_type -36 142 109 490 284 13 13 chr15 72656604 72656759 -13038995 + MIR SINE MIR 108 262 0 353 255 202 24 chr15 72656988 72657191 -13038563 - L1ME4a LINE L1 -17 6104 5848 913 93 7 57 chr15 72657191 72657331 -13038423 + FLAM_C SINE Alu 1 133 0 353 255 202 24 chr15 72657331 72657374 -13038380 - L1ME4a LINE L1 -273 5848 5814 1294 152 10 0 chr15 72657378 72657576 -13038178 + AluJo SINE Alu 98 297 -15 1071 88 0 0 chr15 72660428 72660564 -13035190 + AluY SINE Alu 131 266 -45 258 154 39 0 chr15 72660564 72660642 -13035112 + (TAA)n Simple_repeat Simple_repeat 1 81 0 1816 141 0 54 chr15 72660694 72661019 -13034735 - AluSx SINE Alu 0 312 4 254 247 49 0 chr15 72662163 72662244 -13033510 - MIR SINE MIR 0 262 178 200 320 114 38 chr15 72662616 72662932 -13032822 - L2 LINE L2 -1496 1818 1479 1441 195 133 30 chr15 72663530 72663868 -13031886 - MLT1A2 LTR MaLR -1 373 1 190 302 0 0 chr15 72663916 72663969 -13031785 - MIR SINE MIR 0 262 210 23 78 0 0 chr15 72664640 72664691 -13031063 + AT_rich Low_complexity Low_complexity 1 51 0 534 225 152 0 chr15 72665726 72665877 -13029877 - MIR SINE MIR 0 262 89 21 0 0 0 chr15 72667021 72667042 -13028712 + AT_rich Low_complexity Low_complexity 1 21 0 869 204 103 68 chr15 72667283 72667401 -13028353 - L1M4 LINE L1 -3451 3193 3081 1419 163 31 71 chr15 72667401 72667695 -13028059 - AluJo SINE Alu -30 282 1 869 204 103 68 chr15 72667695 72667944 -13027810 - L1M4 LINE L1 -3563 3081 2813 1814 147 6 32 chr15 72667975 72668289 -13027465 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr15 72668298 72668321 -13027433 + AT_rich Low_complexity Low_complexity 1 23 0 1076 234 202 28 chr15 72668321 72668742 -13027012 - L1M4 LINE L1 -3952 2694 2348 2046 125 3 13 chr15 72668742 72669045 -13026709 - AluSq SINE Alu -13 300 1 1076 234 202 28 chr15 72669045 72669307 -13026447 - L1M4 LINE L1 -4298 2348 1892 * 2693 208 37 57 chr15 72669303 72669685 -13026069 - L1M4 LINE L1 -5074 1468 1109 2531 78 0 0 chr15 72669685 72669991 -13025763 - AluSq SINE Alu -7 306 1 2693 208 37 57 chr15 72669991 72670396 -13025358 - L1M4 LINE L1 -5433 1109 697 1710 246 64 45 chr15 72670582 72671163 -13024591 - L1M4 LINE L1 -5936 606 15 1685 136 0 96 chr15 72674320 72674665 -13021089 + AluJb SINE Alu 1 312 0 535 279 90 25 chr15 72674778 72674979 -13020775 + MIR SINE MIR 14 227 -35 44 80 0 0 chr15 72675022 72675122 -13020632 + AT_rich Low_complexity Low_complexity 1 100 0 304 217 60 0 chr15 72675500 72675583 -13020171 - L1MC5 LINE L1 -536 7425 7338 1791 255 174 41 chr15 72675677 72676697 -13019057 - L1MC4a LINE L1 -1341 6467 5313 2360 87 0 3 chr15 72676816 72677116 -13018638 - AluY SINE Alu -9 302 4 2556 61 3 3 chr15 72679461 72679772 -13015982 + AluY SINE Alu 1 311 0 2032 123 0 23 chr15 72680636 72680938 -13014816 + AluSx SINE Alu 6 300 -12 2134 127 0 3 chr15 72681510 72681824 -13013930 - AluSq SINE Alu 0 313 1 309 233 3 0 chr15 72681877 72681950 -13013804 - Charlie8 DNA MER1_type -2152 265 201 2016 143 0 0 chr15 72682184 72682471 -13013283 - AluSx SINE Alu -25 287 1 441 252 84 0 chr15 72682506 72682637 -13013117 + MIR SINE MIR 71 212 -50 267 278 17 43 chr15 72682857 72682972 -13012782 + GA-rich Low_complexity Low_complexity 1 112 0 26 0 0 0 chr15 72683596 72683622 -13012132 + AT_rich Low_complexity Low_complexity 1 26 0 1139 173 0 40 chr15 72683735 72683960 -13011794 + AluJo SINE Alu 86 301 -11 26 50 0 0 chr15 72684108 72684148 -13011606 + AT_rich Low_complexity Low_complexity 1 40 0 2224 114 0 0 chr15 72684498 72684797 -13010957 + AluSg SINE Alu 1 299 -11 350 342 91 70 chr15 72685690 72686020 -13009734 - L2 LINE L2 -5 3267 2931 206 208 0 19 chr15 72686741 72686779 -13008975 + CT-rich Low_complexity Low_complexity 2 40 -13 2301 107 0 0 chr15 72686779 72687079 -13008675 - AluSg SINE Alu -10 300 1 206 208 0 19 chr15 72687079 72687093 -13008661 + CT-rich Low_complexity Low_complexity 40 53 0 583 266 111 0 chr15 72687200 72687399 -13008355 - MIR SINE MIR -35 227 7 364 296 127 59 chr15 72687474 72688071 -13007683 - L1ME3A LINE L1 -276 5894 5257 244 208 78 52 chr15 72688138 72688215 -13007539 - L1ME3A LINE L1 -7 6163 6085 513 224 190 30 chr15 72688235 72688498 -13007256 - HAL1 LINE L1 -1086 1421 1117 1510 268 126 39 chr15 72688558 72689382 -13006372 - HAL1 LINE L1 -1611 896 1 233 248 181 9 chr15 72689382 72689487 -13006267 - L1MEd LINE L1 -5982 137 15 278 302 95 56 chr15 72689487 72689666 -13006088 - MIR SINE MIR -70 192 7 3366 96 113 0 chr15 72690546 72691017 -13004737 - L1PB1 LINE L1 -7 6144 5621 2101 103 13 35 chr15 72691065 72691376 -13004378 - AluSx SINE Alu -8 304 1 246 104 62 0 chr15 72691584 72691632 -13004122 - L1PA16 LINE L1 -8 6158 6108 785 181 69 7 chr15 72692836 72692980 -13002774 + MER6B DNA MER2_type 58 210 0 367 280 16 80 chr15 72693828 72693953 -13001801 + L2 LINE L2 3185 3301 -12 385 224 0 0 chr15 72694268 72694344 -13001410 + L1ME4a LINE L1 5532 5607 -514 1907 148 20 0 chr15 72694448 72694752 -13001002 + AluJb SINE Alu 1 310 -2 256 211 67 29 chr15 72694914 72695018 -13000736 + L1ME4a LINE L1 5962 6069 -52 2151 133 0 0 chr15 72695873 72696174 -12999580 - AluSx SINE Alu -11 301 1 5056 150 16 8 chr15 72696286 72697266 -12998488 + L1MA8 LINE L1 5166 6111 -180 646 172 0 0 chr15 72697267 72697383 -12998371 + L1MA8 LINE L1 6172 6287 -4 1128 170 60 0 chr15 72697389 72697589 -12998165 + AluJb SINE Alu 86 297 -15 420 228 69 53 chr15 72697690 72697879 -12997875 + L1MC/D LINE L1 5318 5509 -2299 2021 99 3 78 chr15 72698119 72698441 -12997313 - AluSx SINE Alu -14 298 1 1571 197 71 49 chr15 72699319 72699752 -12996002 - MLT1C LTR MaLR 0 467 15 347 203 0 0 chr15 72700364 72700423 -12995331 + U6 snRNA snRNA 1 59 -48 2127 122 3 0 chr15 72700446 72700742 -12995012 + AluSq SINE Alu 1 297 -16 226 293 160 0 chr15 72701660 72701766 -12993988 + Charlie8 DNA MER1_type 102 224 -2193 4375 248 110 15 chr15 72701821 72702891 -12992863 - L1MEc LINE L1 -4531 1692 502 2329 138 112 0 chr15 72702891 72703274 -12992480 - MSTB LTR MaLR 0 426 1 4375 248 110 15 chr15 72703274 72703780 -12991974 - L1MEc LINE L1 -5721 502 45 4431 163 54 24 chr15 72703816 72704685 -12991069 - L1MB5 LINE L1 -8 6166 5272 202 292 0 0 chr15 72710948 72710996 -12984758 - L2 LINE L2 -107 3165 3118 239 357 23 35 chr15 72711028 72711199 -12984555 - L2 LINE L2 -27 3286 3118 228 345 48 0 chr15 72711336 72711420 -12984334 + MIR SINE MIR 38 125 -137 2691 173 328 69 chr15 72712430 72713706 -12982048 + pTR5 LTR ERV1 743 2606 0 316 331 76 7 chr15 72714354 72714499 -12981255 + MIR SINE MIR 16 170 -92 2136 115 3 10 chr15 72714967 72715281 -12980473 - AluSx SINE Alu 0 312 1 536 254 54 43 chr15 72715873 72716058 -12979696 - MIR SINE MIR -6 256 70 1120 219 122 47 chr15 72716065 72716509 -12979245 - MER31A LTR ERV1 -8 477 1 309 333 15 22 chr15 72716893 72717028 -12978726 + L2 LINE L2 3180 3313 0 284 358 71 3 chr15 72717576 72717706 -12978048 + MIR SINE MIR 65 200 -19 462 332 100 9 chr15 72717894 72718114 -12977640 - MIR SINE MIR -3 259 20 2322 65 0 23 chr15 72719348 72719655 -12976099 - AluY SINE Alu -11 300 1 1598 176 20 18 chr15 72719660 72720000 -12975754 + MLT2A2 LTR ERVL 6 309 -144 645 333 124 46 chr15 72720003 72720169 -12975585 + L2 LINE L2 2373 2525 -788 3219 59 0 17 chr15 72720169 72720578 -12975176 - L1PA7 LINE L1 -1 6153 5752 645 333 124 46 chr15 72720578 72720709 -12975045 + L2 LINE L2 2525 2644 -669 1783 173 3 3 chr15 72720709 72721009 -12974745 + AluJo SINE Alu 4 303 -9 645 333 124 46 chr15 72721009 72721576 -12974178 + L2 LINE L2 2644 3313 0 370 275 103 52 chr15 72721626 72721843 -12973911 - MIR SINE MIR -33 229 8 2042 96 3 36 chr15 72722659 72722962 -12972792 + AluSc SINE Alu 1 293 -16 549 287 54 6 chr15 72723163 72723330 -12972424 - MIR SINE MIR -30 232 58 248 337 80 23 chr15 72723364 72723539 -12972215 + MIR SINE MIR 6 190 -72 456 285 0 0 chr15 72723937 72724116 -12971638 + (CA)n Simple_repeat Simple_repeat 1 179 0 2075 208 82 23 chr15 72726839 72727314 -12968440 + MLT1D LTR MaLR 1 503 -2 577 289 77 14 chr15 72727740 72727948 -12967806 - MIR SINE MIR -37 225 5 227 291 51 0 chr15 72729161 72729240 -12966514 + ORSL DNA AcHobo 180 262 -13 349 233 0 0 chr15 72729453 72729526 -12966228 + MER116 DNA Mariner 6 78 -2 294 291 209 17 chr15 72730012 72730184 -12965570 - L2 LINE L2 -10 3303 3099 200 180 20 20 chr15 72730202 72730252 -12965502 + MIR SINE MIR 98 147 -115 186 297 16 16 chr15 72731005 72731069 -12964685 + L2 LINE L2 3209 3272 0 307 284 24 63 chr15 72732459 72732586 -12963168 + MIR SINE MIR 27 148 -114 256 305 35 3 chr15 72733726 72733831 -12961923 + MIR SINE MIR 61 172 -36 228 261 58 0 chr15 72734314 72734383 -12961371 + MIR SINE MIR 70 142 -66 2192 106 0 7 chr15 72734748 72735051 -12960703 + AluSx SINE Alu 2 302 -10 2558 116 25 0 chr15 72735155 72735510 -12960244 + THE1B LTR MaLR 1 364 0 189 395 113 0 chr15 72736179 72736374 -12959380 - MIR SINE MIR -24 238 22 302 169 28 14 chr15 72736884 72736955 -12958799 - MER5A DNA MER1_type -109 80 9 314 321 188 6 chr15 72737501 72737666 -12958088 + MIR SINE MIR 23 217 -45 973 217 57 89 chr15 72738043 72738412 -12957342 + MLT1A2 LTR MaLR 2 358 -16 283 284 0 0 chr15 72739108 72739175 -12956579 + MIR SINE MIR 57 123 -139 404 250 169 27 chr15 72739329 72739477 -12956277 - MIR SINE MIR -2 260 92 1853 121 28 3 chr15 72741963 72742252 -12953502 - AluSx SINE Alu -16 296 1 408 239 182 0 chr15 72743357 72743516 -12952238 + LTR50 LTR ERVL 1 188 -607 293 290 47 0 chr15 72743673 72743780 -12951974 + LTR33A LTR ERVL 405 516 -7 1251 112 0 11 chr15 72745783 72745962 -12949792 - AluSg/x SINE Alu -15 297 121 239 364 0 8 chr15 72747318 72747447 -12948307 + (CCG)n Simple_repeat Simple_repeat 2 129 0 931 97 110 0 chr15 72747469 72747614 -12948140 - AluSq SINE Alu -151 162 2 380 226 89 40 chr15 72747655 72747779 -12947975 + MIR SINE MIR 24 153 -109 433 236 56 81 chr15 72747904 72748065 -12947689 + HAL1b LINE L1 1192 1348 0 450 264 0 9 chr15 72748897 72749003 -12946751 + MER81 DNA DNA 9 113 -1 1395 181 73 10 chr15 72749525 72749839 -12945915 + MLT1A1 LTR MaLR 32 365 0 2259 107 0 0 chr15 72749909 72750208 -12945546 - AluSx SINE Alu -13 299 1 1095 180 11 11 chr15 72750410 72750599 -12945155 - MER5A DNA MER1_type 0 189 1 25 51 0 0 chr15 72753665 72753704 -12942050 + GC_rich Low_complexity Low_complexity 1 39 0 25 75 0 0 chr15 72753935 72753988 -12941766 + GC_rich Low_complexity Low_complexity 1 53 0 212 237 34 17 chr15 72756400 72756459 -12939295 + MIR SINE MIR 95 154 -108 191 304 190 0 chr15 72757239 72757318 -12938436 - L2 LINE L2 -6 3266 3173 371 289 124 26 chr15 72757411 72757605 -12938149 - MIR SINE MIR 0 262 50 425 259 15 38 chr15 72758058 72758189 -12937565 + MER5B DNA MER1_type 32 159 -19 228 245 0 0 chr15 72758348 72758397 -12937357 + MLT1K LTR MaLR 219 267 -321 1861 140 0 11 chr15 72758534 72758806 -12936948 - AluSx SINE Alu -43 269 1 2117 124 7 0 chr15 72760336 72760626 -12935128 + AluSx SINE Alu 1 292 -20 39 68 0 0 chr15 72760877 72760951 -12934803 + AT_rich Low_complexity Low_complexity 1 74 0 1268 124 5 25 chr15 72760996 72761197 -12934557 - AluJb SINE Alu -11 301 105 256 276 43 43 chr15 72761211 72761327 -12934427 - MIR3 SINE MIR -80 128 13 573 227 26 26 chr15 72762801 72762955 -12932799 + MIR SINE MIR 109 262 0 1934 174 0 3 chr15 72764128 72764427 -12931327 - AluSx SINE Alu -14 298 1 208 284 27 40 chr15 72764520 72764594 -12931160 - MIR SINE MIR -78 130 58 2200 131 0 0 chr15 72765259 72765571 -12930183 - AluSx SINE Alu 0 312 1 234 0 0 0 chr15 72768263 72768289 -12927465 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr15 72769327 72769352 -12926402 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr15 72770043 72770075 -12925679 + GC_rich Low_complexity Low_complexity 1 32 0 246 146 11 67 chr15 72770100 72770189 -12925565 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 21 0 0 0 chr15 72770198 72770219 -12925535 + GC_rich Low_complexity Low_complexity 1 21 0 320 143 48 16 chr15 72771250 72771313 -12924441 + MIR SINE MIR 76 140 -68 405 0 0 0 chr15 72771320 72771365 -12924389 + (TG)n Simple_repeat Simple_repeat 1 45 0 420 339 77 52 chr15 72771366 72771652 -12924102 + L2 LINE L2 2949 3241 -31 285 295 45 27 chr15 72772881 72772993 -12922761 - L2 LINE L2 -18 3254 3141 3653 148 17 14 chr15 72773500 72773783 -12921971 + MER73 LTR ERVL 1 282 -362 237 33 0 0 chr15 72773783 72773813 -12921941 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 3653 148 17 14 chr15 72773813 72774170 -12921584 + MER73 LTR ERVL 282 643 -1 1738 177 100 102 chr15 72774294 72774922 -12920832 - HERVL74 LTR ERVL -464 5221 4595 508 225 42 0 chr15 72774916 72775036 -12920718 - HERVL74 LTR ERVL -1659 4026 3902 * 554 176 122 54 chr15 72775035 72775183 -12920571 - HERVL74 LTR ERVL -2042 3643 3486 * 5285 191 26 23 chr15 72775171 72776205 -12919549 - HERVL74 LTR ERVL -2345 3340 2310 2264 115 0 31 chr15 72776205 72776527 -12919227 - AluSx SINE Alu 0 312 1 5285 191 26 23 chr15 72776527 72777249 -12918505 - HERVL74 LTR ERVL -3375 2310 1592 1956 162 10 0 chr15 72777249 72777545 -12918209 - AluJb SINE Alu -8 304 6 5285 191 26 23 chr15 72777545 72777955 -12917799 - HERVL74 LTR ERVL -4093 1592 1185 2491 70 3 0 chr15 72777955 72778257 -12917497 - AluY SINE Alu -8 303 1 2426 80 3 0 chr15 72778262 72778562 -12917192 - AluSp SINE Alu -12 301 1 5285 191 26 23 chr15 72778562 72778604 -12917150 - HERVL74 LTR ERVL -4503 1182 1043 29 47 0 0 chr15 72778630 72778673 -12917081 + AT_rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr15 72778817 72778841 -12916913 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2174 184 18 5 chr15 72778983 72779374 -12916380 - MSTD LTR MaLR 0 396 1 2267 73 14 3 chr15 72780254 72780542 -12915212 - AluSc SINE Alu -17 292 2 1934 152 69 0 chr15 72780543 72780904 -12914850 + MER73 LTR ERVL 4 389 -255 2387 92 0 0 chr15 72780906 72781201 -12914553 + AluY SINE Alu 1 295 -16 382 266 133 48 chr15 72781989 72782177 -12913577 - MIR SINE MIR -50 212 9 245 188 71 147 chr15 72782789 72782959 -12912795 - MLT1J1 LTR MaLR 0 446 290 244 212 229 8 chr15 72783116 72783234 -12912520 - MLT1J LTR MaLR -362 149 6 295 289 116 16 chr15 72783270 72783391 -12912363 + MIR SINE MIR 3 135 -127 845 303 91 23 chr15 72783626 72784065 -12911689 + L2 LINE L2 2496 2964 -350 181 253 26 110 chr15 72784139 72784293 -12911461 + L2 LINE L2 3108 3248 -65 515 303 81 17 chr15 72784473 72784833 -12910921 - L1ME LINE L1 -389 5732 5350 2309 55 4 0 chr15 72785944 72786217 -12909537 + AluY SINE Alu 1 274 -37 216 308 31 0 chr15 72787887 72787952 -12907802 - L2 LINE L2 -214 3058 2992 323 278 85 40 chr15 72791330 72791506 -12904248 + L1M3 LINE L1 5121 5304 -842 1278 259 94 41 chr15 72794077 72794640 -12901114 - Zaphod DNA AcHobo -3373 658 66 888 265 33 23 chr15 72794719 72795025 -12900729 - L2 LINE L2 -881 2433 2125 674 150 0 95 chr15 72795047 72795194 -12900560 + L1M3 LINE L1 5452 5584 -599 260 111 0 0 chr15 72795195 72795231 -12900523 + Alu SINE Alu 1 36 -264 2350 144 53 0 chr15 72796929 72797305 -12898449 + MSTD LTR MaLR 1 396 0 2376 105 0 0 chr15 72797529 72797835 -12897919 + AluSq SINE Alu 1 306 -7 277 270 212 9 chr15 72798043 72798153 -12897601 + MIR SINE MIR 20 150 -62 2353 104 0 7 chr15 72800218 72800525 -12895229 + AluSx SINE Alu 1 305 -7 388 283 67 76 chr15 72800530 72800763 -12894991 + L1ME4a LINE L1 5602 5833 -288 1352 211 68 14 chr15 72800763 72801128 -12894626 - MER58D DNA MER1_type -1 385 1 388 283 67 76 chr15 72801128 72801209 -12894545 + L1ME4a LINE L1 5833 5913 -208 392 323 0 8 chr15 72801209 72801333 -12894421 + MLT1I LTR MaLR 1 123 -286 3677 200 34 35 chr15 72801366 72802311 -12893443 + L1ME1 LINE L1 5204 6151 -15 828 153 6 23 chr15 72802346 72802523 -12893231 + GA-rich Low_complexity Low_complexity 1 174 0 682 167 0 43 chr15 72802628 72802814 -12892940 + GA-rich Low_complexity Low_complexity 1 178 0 258 171 26 26 chr15 72802828 72802904 -12892850 + GA-rich Low_complexity Low_complexity 1 76 0 360 0 0 0 chr15 72803863 72803903 -12891851 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 736 253 48 44 chr15 72803979 72804228 -12891526 + MIR SINE MIR 1 250 -12 512 160 106 120 chr15 72804928 72805049 -12890705 - MER20B DNA MER1_type -4 779 658 2385 92 0 0 chr15 72805049 72805344 -12890410 - AluY SINE Alu -15 296 2 512 160 106 120 chr15 72805344 72805497 -12890257 - MER20B DNA MER1_type -125 658 509 2079 133 77 3 chr15 72805580 72805942 -12889812 - MSTA LTR MaLR -39 389 1 1165 240 94 39 chr15 72806000 72806374 -12889380 - MER20B DNA MER1_type -327 456 55 2228 103 3 0 chr15 72806374 72806666 -12889088 + AluSg SINE Alu 1 293 -17 1165 240 94 39 chr15 72806666 72806704 -12889050 - MER20B DNA MER1_type -728 55 21 325 310 168 9 chr15 72806709 72806822 -12888932 - MIR3 SINE MIR -49 159 29 908 79 0 0 chr15 72807257 72807371 -12888383 + AluY SINE Alu 1 114 -197 1841 65 0 53 chr15 72807371 72807616 -12888138 + AluY SINE Alu 67 298 -13 369 244 72 92 chr15 72807828 72808218 -12887536 + LTR15 LTR ERV1 112 493 0 187 409 11 21 chr15 72808310 72808496 -12887258 - L2 LINE L2 -981 2333 2150 774 144 0 8 chr15 72808655 72808773 -12886981 - AluSq/x SINE Alu -196 117 1 5203 136 20 5 chr15 72809214 72809759 -12885995 + L1PA16 LINE L1 5271 5837 -329 2340 104 3 0 chr15 72809759 72810068 -12885686 + AluSx SINE Alu 1 310 -2 5203 136 20 5 chr15 72810068 72810404 -12885350 + L1PA16 LINE L1 5837 6166 0 218 349 110 0 chr15 72812043 72812152 -12883602 + L2 LINE L2 2231 2351 -963 3977 181 34 47 chr15 72812413 72812605 -12883149 + L1MD2 LINE L1 5384 5577 -782 2247 119 0 0 chr15 72812605 72812900 -12882854 - AluSx SINE Alu -13 299 5 3977 181 34 47 chr15 72812900 72813671 -12882083 + L1MD2 LINE L1 5577 6335 -24 971 169 5 53 chr15 72813711 72813761 -12881993 - L1MB3 LINE L1 0 6183 6132 2389 78 7 3 chr15 72813761 72814057 -12881697 - AluSq SINE Alu -16 297 1 971 169 5 53 chr15 72814057 72814213 -12881541 - L1MB3 LINE L1 -51 6132 5987 495 188 21 0 chr15 72814435 72814531 -12881223 + MER69 DNA AcHobo 60 157 -1069 1035 138 0 0 chr15 72814586 72814738 -12881016 + AluSc SINE Alu 158 309 0 209 325 58 0 chr15 72814977 72815092 -12880662 - MIR3 SINE MIR -9 199 72 215 277 21 0 chr15 72815141 72815188 -12880566 - L2 LINE L2 -14 3299 3252 227 274 137 0 chr15 72815208 72815281 -12880473 - MIR SINE MIR -31 231 149 1312 102 25 5 chr15 72815281 72815477 -12880277 + MSTA LTR MaLR 1 200 -228 1208 78 0 0 chr15 72815479 72815621 -12880133 + AluSq/x SINE Alu 3 144 -169 409 106 0 0 chr15 72815621 72815687 -12880067 + Alu SINE Alu 238 303 -8 1355 127 53 0 chr15 72815688 72815916 -12879838 + MSTA LTR MaLR 189 428 0 534 241 23 15 chr15 72815917 72816050 -12879704 - MIR SINE MIR -110 152 19 3113 198 75 32 chr15 72816326 72817332 -12878422 - MER69 DNA AcHobo 0 2526 1477 2266 85 0 17 chr15 72817468 72817763 -12877991 - AluSc SINE Alu -19 290 1 1223 126 23 19 chr15 72817816 72818030 -12877724 + MLT2C2 LTR ERVL 6 220 -244 352 285 39 11 chr15 72818500 72818624 -12877130 + MER5A DNA MER1_type 4 139 -48 2772 159 39 2 chr15 72818639 72819124 -12876630 + L1MB3 LINE L1 5672 6174 -9 2344 102 10 0 chr15 72819146 72819440 -12876314 + AluSx SINE Alu 1 297 -15 2616 51 3 3 chr15 72820036 72820347 -12875407 - AluY SINE Alu 0 311 1 2397 78 0 0 chr15 72821215 72821527 -12874227 - AluSx SINE Alu 0 312 1 1247 156 83 0 chr15 72821570 72821788 -12873966 - MER46A DNA MER2_type 0 236 1 640 174 145 87 chr15 72822004 72822150 -12873604 - MER20B DNA MER1_type 0 219 56 807 221 0 63 chr15 72822150 72822231 -12873523 - MER45A DNA AcHobo -1403 178 93 1891 123 43 56 chr15 72822231 72822533 -12873221 + AluSx SINE Alu 1 298 -14 807 221 0 63 chr15 72822533 72822641 -12873113 - MER45A DNA AcHobo -1488 93 1 640 174 145 87 chr15 72822641 72822701 -12873053 - MER20B DNA MER1_type -163 56 1 1284 140 5 0 chr15 72822817 72823010 -12872744 + MER58A DNA MER1_type 28 221 -3 712 168 0 9 chr15 72824571 72824684 -12871070 + FLAM_C SINE Alu 6 117 -26 409 215 108 0 chr15 72824857 72824950 -12870804 - MER5A DNA MER1_type -83 106 4 1945 152 20 0 chr15 72825123 72825420 -12870334 - AluJo SINE Alu -9 303 1 192 40 0 0 chr15 72825529 72825554 -12870200 + (TTG)n Simple_repeat Simple_repeat 2 26 0 268 256 33 33 chr15 72825560 72825650 -12870104 + MIR SINE MIR 66 155 -107 484 253 242 11 chr15 72825661 72825843 -12869911 + MIR SINE MIR 22 245 -17 602 294 69 25 chr15 72826369 72826689 -12869065 + MER102b DNA MER1_type 3 336 -5 293 311 92 19 chr15 72826822 72826963 -12868791 + MIR3 SINE MIR 13 157 -74 996 104 0 15 chr15 72827089 72827223 -12868531 + AluY SINE Alu 1 132 -179 2344 71 0 39 chr15 72827234 72827545 -12868209 + AluY SINE Alu 1 299 -12 442 301 131 0 chr15 72828733 72828886 -12866868 - MER69A DNA AcHobo 0 177 5 2244 94 3 32 chr15 72829571 72829879 -12865875 + AluSx SINE Alu 1 299 -13 2317 79 0 41 chr15 72829972 72830290 -12865464 + AluY SINE Alu 1 305 -6 1957 131 30 7 chr15 72830788 72831085 -12864669 + AluSx SINE Alu 1 304 -8 190 275 0 0 chr15 72831204 72831244 -12864510 + L2 LINE L2 3218 3257 -15 188 155 0 85 chr15 72832686 72832738 -12863016 + MER5C DNA MER1_type 4 49 -140 659 233 110 0 chr15 72832746 72832892 -12862862 + MER5A DNA MER1_type 28 189 0 2001 110 4 7 chr15 72832925 72833280 -12862474 + AluSx SINE Alu 3 356 0 36 62 0 0 chr15 72833828 72833892 -12861862 + AT_rich Low_complexity Low_complexity 1 64 0 1466 199 11 64 chr15 72833893 72834018 -12861736 - L1MB8 LINE L1 -9 6169 6039 1792 173 10 3 chr15 72834018 72834313 -12861441 + AluJb SINE Alu 1 297 -15 2306 75 11 0 chr15 72834315 72834639 -12861115 + AluSp SINE Alu 1 327 0 1466 199 11 64 chr15 72834639 72834914 -12860840 - L1MB8 LINE L1 -140 6038 5785 1800 175 48 0 chr15 72835495 72835787 -12859967 + AluJo SINE Alu 2 307 -5 340 288 112 126 chr15 72836251 72836736 -12859018 + L2 LINE L2 2239 2717 -597 2443 97 0 0 chr15 72836736 72837045 -12858709 - AluSg SINE Alu -1 309 1 340 288 112 126 chr15 72837045 72837114 -12858640 + L2 LINE L2 2717 2785 -529 305 226 65 54 chr15 72837169 72837262 -12858492 + L2 LINE L2 3170 3263 -9 181 335 225 3 chr15 72838488 72838745 -12857009 - L2 LINE L2 -593 2721 2376 2615 59 0 3 chr15 72838745 72839049 -12856705 + AluSq SINE Alu 1 303 -10 181 335 225 3 chr15 72839049 72839116 -12856638 - L2 LINE L2 -938 2376 2325 1038 301 85 22 chr15 72840398 72840859 -12854895 - MLT1K LTR MaLR -39 549 60 236 335 155 43 chr15 72841927 72842205 -12853549 - L2 LINE L2 -44 3228 2920 2603 44 0 3 chr15 72843599 72843897 -12851857 - AluY SINE Alu -14 297 1 24 53 0 0 chr15 72843903 72843941 -12851813 + AT_rich Low_complexity Low_complexity 1 38 0 301 312 111 45 chr15 72844129 72844328 -12851426 - L1MC4a LINE L1 -1898 5910 5699 2397 81 0 16 chr15 72845636 72845946 -12849808 + AluY SINE Alu 1 305 -6 292 325 67 8 chr15 72845964 72846084 -12849670 - MIR SINE MIR -15 247 121 247 204 0 37 chr15 72846485 72846539 -12849215 + L2 LINE L2 3221 3272 0 380 241 116 0 chr15 72846983 72847095 -12848659 - L2 LINE L2 -1 3271 3147 2115 119 0 55 chr15 72848726 72849053 -12846701 - AluSx SINE Alu 0 312 4 2890 131 66 11 chr15 72849593 72849765 -12845989 - L1MA7 LINE L1 -2 6289 6128 2346 101 92 15 chr15 72849765 72850103 -12845651 - THE1B LTR MaLR 0 364 1 2890 131 66 11 chr15 72850103 72850458 -12845296 - L1MA7 LINE L1 -163 6128 5733 1554 83 45 12 chr15 72850466 72850708 -12845046 + L1MA7 LINE L1 5478 5727 -564 463 386 39 20 chr15 72850957 72851263 -12844491 - L1M4 LINE L1 -2396 3750 3439 2397 90 7 0 chr15 72851265 72851565 -12844189 - AluSx SINE Alu -10 302 1 258 32 0 0 chr15 72851677 72851708 -12844046 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 2025 111 35 3 chr15 72851821 72852110 -12843644 + AluSq SINE Alu 5 302 -11 26 0 0 0 chr15 72853095 72853121 -12842633 + AT_rich Low_complexity Low_complexity 1 26 0 318 185 0 0 chr15 72853121 72853186 -12842568 - L1MB2 LINE L1 -32 6139 6075 722 231 95 58 chr15 72853391 72853633 -12842121 - MIR SINE MIR -4 258 8 295 275 64 23 chr15 72854145 72854316 -12841438 + LTR67 LTR ERVL 380 557 0 269 311 22 11 chr15 72854378 72854468 -12841286 - L3 LINE CR1 -624 953 863 283 158 0 18 chr15 72855115 72855172 -12840582 - MLT2F LTR ERVL 0 663 608 2337 105 0 0 chr15 72855189 72855485 -12840269 - AluSx SINE Alu -16 296 1 1299 213 16 44 chr15 72855514 72855881 -12839873 - MLT2C1 LTR ERVL -40 357 1 182 296 42 14 chr15 72856601 72856672 -12839082 - L2 LINE L2 -12 3260 3188 1772 171 6 22 chr15 72856694 72857009 -12838745 + MLT1A1 LTR MaLR 2 311 -54 1122 116 0 7 chr15 72857009 72857155 -12838599 - AluSq/x SINE Alu -167 145 1 354 280 36 60 chr15 72857204 72857283 -12838471 - MER20B DNA MER1_type -619 164 85 2693 134 19 30 chr15 72857283 72857670 -12838084 + MSTA LTR MaLR 1 384 -44 2562 59 0 7 chr15 72857670 72857975 -12837779 - AluY SINE Alu -8 303 1 2693 134 19 30 chr15 72857975 72858020 -12837734 + MSTA LTR MaLR 384 428 0 354 280 36 60 chr15 72858020 72858108 -12837646 - MER20B DNA MER1_type -698 85 1 238 304 29 0 chr15 72858258 72858360 -12837394 - MLT1L LTR MaLR -2 613 509 655 253 62 36 chr15 72858385 72858579 -12837175 + MIR SINE MIR 27 225 -37 1040 98 0 0 chr15 72858603 72858735 -12837019 - AluSq/x SINE Alu -180 132 1 2506 67 7 0 chr15 72858746 72859044 -12836710 - AluY SINE Alu -11 300 1 1088 140 6 6 chr15 72859169 72859348 -12836406 - L1PA2 LINE L1 0 6155 5977 268 255 224 0 chr15 72859528 72859626 -12836128 - MER5C DNA MER1_type -204 120 1 190 360 93 0 chr15 72860298 72860384 -12835370 + L3b LINE CR1 1473 1566 -17 226 292 158 50 chr15 72860627 72860643 -12835111 - L2 LINE L2 0 3313 3300 2319 68 3 7 chr15 72860643 72860952 -12834802 + AluY SINE Alu 1 308 -3 198 103 0 0 chr15 72860952 72860981 -12834773 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 226 292 158 50 chr15 72860981 72861083 -12834671 - L2 LINE L2 -12 3301 3181 394 277 6 79 chr15 72861251 72861428 -12834326 + MER5A DNA MER1_type 26 189 0 196 336 78 8 chr15 72861445 72861573 -12834181 + L2 LINE L2 2918 3054 -218 2288 92 0 0 chr15 72861885 72862191 -12833563 - AluSg SINE Alu -4 306 1 504 325 6 6 chr15 72862952 72863121 -12832633 + MIR SINE MIR 16 184 -78 1500 168 0 4 chr15 72863132 72863406 -12832348 - AluJb SINE Alu -25 287 15 1747 55 18 0 chr15 72863603 72863823 -12831931 - L1PA8 LINE L1 -17 6155 5932 2137 156 28 35 chr15 72863823 72864221 -12831533 - MSTB1 LTR MaLR -37 395 1 191 276 10 0 chr15 72864403 72864501 -12831253 + (CCA)n Simple_repeat Simple_repeat 2 100 0 613 296 71 5 chr15 72864501 72864697 -12831057 - MIR SINE MIR -7 255 47 707 110 26 39 chr15 72865076 72865304 -12830450 + (CAGAGA)n Simple_repeat Simple_repeat 1 225 0 188 146 0 42 chr15 72865446 72865494 -12830260 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 327 239 0 0 chr15 72865525 72865692 -12830062 + GA-rich Low_complexity Low_complexity 2 168 0 235 275 92 37 chr15 72866722 72866831 -12828923 + MIR SINE MIR 63 177 -85 2002 94 49 40 chr15 72867052 72867197 -12828557 - MER4A LTR ERV1 0 664 522 2118 119 14 36 chr15 72867197 72867558 -12828196 - THE1A LTR MaLR 0 355 3 2002 94 49 40 chr15 72867558 72867693 -12828061 - MER4A LTR ERV1 -142 522 390 2263 73 0 10 chr15 72867693 72867993 -12827761 - AluY SINE Alu -12 299 3 2002 94 49 40 chr15 72867993 72868264 -12827490 - MER4A LTR ERV1 -274 390 1 532 276 14 21 chr15 72868606 72868751 -12827003 - MIR SINE MIR -70 192 49 192 179 0 0 chr15 72869694 72869733 -12826021 + GA-rich Low_complexity Low_complexity 3 41 0 1695 170 58 50 chr15 72870872 72871027 -12824727 + MLT1B LTR MaLR 2 154 -236 2327 87 0 31 chr15 72871027 72871350 -12824404 + AluSq SINE Alu 1 313 0 1695 170 58 50 chr15 72871350 72871553 -12824201 + MLT1B LTR MaLR 154 363 -27 362 324 19 0 chr15 72871651 72871759 -12823995 + MIR SINE MIR 118 227 -35 2287 78 3 3 chr15 72872232 72872539 -12823215 - AluSx SINE Alu -5 307 1 228 294 29 59 chr15 72872653 72872755 -12822999 - L2 LINE L2 -1 3312 3214 306 292 17 58 chr15 72873417 72873537 -12822217 + MER5A DNA MER1_type 1 115 -74 479 272 47 82 chr15 72873770 72873924 -12821830 + MIR SINE MIR 2 145 -117 2274 75 10 0 chr15 72873924 72874216 -12821538 + AluSc SINE Alu 1 295 -14 479 272 47 82 chr15 72874216 72874318 -12821436 + MIR SINE MIR 145 249 -13 187 302 16 0 chr15 72874350 72874413 -12821341 + L3b LINE CR1 1355 1418 -165 829 224 31 45 chr15 72874504 72874727 -12821027 - MIR SINE MIR -35 227 8 1763 156 10 7 chr15 72874819 72875114 -12820640 - AluJo SINE Alu -16 296 1 200 330 97 10 chr15 72875160 72875263 -12820491 + MIR SINE MIR 36 147 -115 258 108 0 0 chr15 72875263 72875300 -12820454 + MER4A LTR ERV1 1 37 -627 * 328 195 143 0 chr15 72875296 72875373 -12820381 + MER4A LTR ERV1 212 299 -365 541 172 221 14 chr15 72875456 72875601 -12820153 + MER4C LTR ERV1 291 465 0 367 305 26 13 chr15 72875728 72875879 -12819875 - L3b LINE CR1 -329 1254 1102 5917 102 18 0 chr15 72876072 72877107 -12818647 - L1PB2 LINE L1 -76 6075 5022 574 300 66 44 chr15 72877576 72877803 -12817951 + MIR SINE MIR 21 252 -10 210 118 0 0 chr15 72877810 72877844 -12817910 + (ATG)n Simple_repeat Simple_repeat 2 35 0 307 304 0 0 chr15 72877936 72878015 -12817739 + L1MC4 LINE L1 6636 6714 -1328 607 179 159 20 chr15 72878053 72878204 -12817550 - MER63B DNA MER1_type -264 172 1 362 232 131 98 chr15 72878657 72879024 -12816730 + L1ME4a LINE L1 5706 6084 -37 28 22 0 22 chr15 72879034 72879048 -12816706 + AT_rich Low_complexity Low_complexity 1 14 -31 692 124 7 90 chr15 72879048 72879193 -12816561 - FLAM_C SINE Alu 0 133 1 28 22 0 22 chr15 72879193 72879224 -12816530 + AT_rich Low_complexity Low_complexity 14 45 0 213 180 40 20 chr15 72879240 72879290 -12816464 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 569 311 96 5 chr15 72879943 72880152 -12815602 + MIR SINE MIR 2 229 -33 196 222 28 0 chr15 72880207 72880279 -12815475 + CT-rich Low_complexity Low_complexity 2 75 0 2442 48 0 3 chr15 72880448 72880757 -12814997 - AluY SINE Alu -3 308 1 4680 162 51 53 chr15 72881120 72881280 -12814474 - L1MB2 LINE L1 0 6171 6012 1923 98 0 0 chr15 72881280 72881535 -12814219 + AluSq SINE Alu 1 255 -58 4680 162 51 53 chr15 72881535 72882284 -12813470 - L1MB2 LINE L1 -159 6012 5263 2251 82 3 0 chr15 72882284 72882576 -12813178 - AluY SINE Alu -16 295 3 2115 82 3 3 chr15 72882577 72882859 -12812895 - AluSc SINE Alu -13 296 15 4680 162 51 53 chr15 72882859 72883102 -12812652 - L1MB2 LINE L1 -907 5264 5028 21 57 0 0 chr15 72883600 72883635 -12812119 + AT_rich Low_complexity Low_complexity 1 35 0 591 313 69 19 chr15 72883734 72884054 -12811700 - L1MC/D LINE L1 -2160 6146 5811 227 291 95 24 chr15 72884085 72884295 -12811459 - L1MC/D LINE L1 -4136 2510 2286 1093 112 48 0 chr15 72884319 72884506 -12811248 - L1MA9 LINE L1 -1 6311 6116 1561 89 4 9 chr15 72884509 72884734 -12811020 - L1PA13 LINE L1 -1 6162 5939 1325 160 24 6 chr15 72884734 72884983 -12810771 + L1MA9 LINE L1 5885 6146 -28 1508 212 46 43 chr15 72885008 72885381 -12810373 + MLT1A2 LTR MaLR 1 374 0 21 36 0 0 chr15 72885414 72885442 -12810312 + AT_rich Low_complexity Low_complexity 1 28 0 2235 63 0 7 chr15 72885470 72885783 -12809971 - AluSc SINE Alu 0 311 1 349 284 39 54 chr15 72885790 72885994 -12809760 - L1MC/D LINE L1 -4488 2158 1958 2860 226 25 69 chr15 72885994 72886809 -12808945 - L1MC/D LINE L1 -5756 786 8 1887 142 10 0 chr15 72886848 72887137 -12808617 - AluSq SINE Alu -21 292 1 213 39 0 0 chr15 72887158 72887184 -12808570 + (TG)n Simple_repeat Simple_repeat 1 26 0 230 174 22 0 chr15 72887192 72887238 -12808516 + (CA)n Simple_repeat Simple_repeat 2 48 0 420 284 83 33 chr15 72887239 72887562 -12808192 - L1MEc LINE L1 -3140 3075 2087 248 250 110 0 chr15 72887638 72887738 -12808016 - HAL1 LINE L1 -835 1672 1562 265 100 0 0 chr15 72887768 72887808 -12807946 + U5 snRNA snRNA 5 44 -72 480 305 18 12 chr15 72887941 72888105 -12807649 + MIR SINE MIR 63 227 -35 438 306 118 51 chr15 72888128 72888383 -12807371 - HAL1 LINE L1 -1140 1367 1096 297 282 186 6 chr15 72888896 72889052 -12806702 - L1ME LINE L1 -294 5827 5644 541 292 20 14 chr15 72889201 72889374 -12806380 - MER5A DNA MER1_type -1 188 4 223 311 119 20 chr15 72889626 72889777 -12805977 + MIR3 SINE MIR 21 186 -22 186 43 0 0 chr15 72890869 72890892 -12804862 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 343 307 72 0 chr15 72890973 72891126 -12804628 - MER103 DNA DNA -2 164 1 1568 149 52 0 chr15 72891445 72891714 -12804040 - AluJb SINE Alu -9 303 21 326 324 139 31 chr15 72891768 72892055 -12803699 + MLT1K LTR MaLR 156 473 -115 514 343 142 15 chr15 72892287 72892611 -12803143 - L3 LINE CR1 -24 1553 1189 621 312 40 51 chr15 72893328 72893700 -12802054 - L1ME4a LINE L1 -262 5859 5492 226 324 162 9 chr15 72893755 72893866 -12801888 - L3 LINE CR1 -469 1108 981 1287 158 114 28 chr15 72893872 72894084 -12801670 + MLT1D LTR MaLR 1 240 -265 318 26 0 0 chr15 72894084 72894123 -12801631 + (GA)n Simple_repeat Simple_repeat 2 40 0 1287 158 114 28 chr15 72894123 72894164 -12801590 + MLT1D LTR MaLR 240 276 -229 2857 156 0 32 chr15 72894165 72894227 -12801527 + LTR32 LTR ERVL 14 76 -395 1964 113 69 33 chr15 72894227 72894589 -12801165 + THE1C LTR MaLR 1 375 0 2857 156 0 32 chr15 72894589 72894999 -12800755 + LTR32 LTR ERVL 76 471 0 1021 186 109 5 chr15 72894999 72895208 -12800546 + MLT1D LTR MaLR 274 504 -1 207 0 0 0 chr15 72895496 72895519 -12800235 + (T)n Simple_repeat Simple_repeat 1 23 0 514 143 0 0 chr15 72896465 72896556 -12799198 - L1PA16 LINE L1 -16 6150 6060 471 286 60 36 chr15 72897094 72897262 -12798492 + MIR SINE MIR 20 191 -71 2063 101 0 17 chr15 72897274 72897572 -12798182 + AluSx SINE Alu 1 293 -19 1474 137 0 26 chr15 72897617 72897851 -12797903 + AluJo SINE Alu 71 298 -14 1828 171 13 18 chr15 72898113 72898473 -12797281 - Charlie5 DNA MER1_type -1 2623 2263 193 29 29 29 chr15 72898473 72898508 -12797246 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2025 103 4 0 chr15 72898510 72898791 -12796963 - AluSx SINE Alu -30 282 1 1828 171 13 18 chr15 72898791 72898819 -12796935 - Charlie5 DNA MER1_type -362 2262 2234 412 195 124 0 chr15 72898816 72898929 -12796825 - Charlie5 DNA MER1_type -2485 127 1 * 442 288 24 16 chr15 72899042 72899167 -12796587 + MER5B DNA MER1_type 35 160 -18 281 113 32 97 chr15 72899993 72900055 -12795699 + MER117 DNA MER1_type 70 127 -70 216 200 89 0 chr15 72900608 72900653 -12795101 + L2 LINE L2 3224 3272 0 361 56 0 56 chr15 72900713 72900784 -12794970 + (TA)n Simple_repeat Simple_repeat 2 68 0 569 252 143 52 chr15 72900846 72901178 -12794576 + L2 LINE L2 2675 3080 -233 1889 142 7 3 chr15 72901178 72901480 -12794274 - AluSx SINE Alu -5 307 5 569 252 143 52 chr15 72901480 72901683 -12794071 + L2 LINE L2 3080 3263 -50 2393 114 5 35 chr15 72901873 72902249 -12793505 + MLT1A1 LTR MaLR 1 365 0 498 232 40 8 chr15 72902741 72902866 -12792888 + MIR SINE MIR 20 148 -114 25 31 0 0 chr15 72903541 72903573 -12792181 + AT_rich Low_complexity Low_complexity 1 32 0 225 346 96 0 chr15 72903604 72903760 -12791994 - MIR SINE MIR -20 242 72 2125 75 51 0 chr15 72904509 72904681 -12791073 - AluY SINE Alu -2 309 114 207 0 0 0 chr15 72904681 72904704 -12791050 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2125 75 51 0 chr15 72904704 72904825 -12790929 - AluY SINE Alu -197 114 1 1232 161 9 9 chr15 72904845 72905068 -12790686 - AluJo SINE Alu -30 282 60 303 379 108 23 chr15 72906026 72906377 -12789377 + L2 LINE L2 2495 2875 -439 689 241 38 0 chr15 72906417 72906575 -12789179 + MIR SINE MIR 66 229 -33 209 383 12 0 chr15 72906696 72906777 -12788977 + L2 LINE L2 3105 3186 -86 2239 106 0 0 chr15 72907909 72908212 -12787542 - AluSc SINE Alu -6 303 1 1031 270 61 6 chr15 72908580 72908925 -12786829 + L1ME3A LINE L1 5593 5956 -214 444 331 24 6 chr15 72909319 72909485 -12786269 - MIR SINE MIR -9 253 85 207 0 0 0 chr15 72909637 72909660 -12786094 + (TTA)n Simple_repeat Simple_repeat 2 24 0 372 269 134 0 chr15 72910540 72910659 -12785095 + MLT1I LTR MaLR 20 154 -255 590 224 77 0 chr15 72910714 72910857 -12784897 + MLT1I LTR MaLR 256 409 0 498 206 19 0 chr15 72910984 72911091 -12784663 - L1ME1 LINE L1 -255 6305 6197 485 235 69 92 chr15 72911340 72911731 -12784023 - LTR15 LTR ERV1 0 493 112 1334 223 156 74 chr15 72911976 72912177 -12783577 - L1ME3A LINE L1 -2 6168 5985 2371 68 0 0 chr15 72912177 72912472 -12783282 - AluSc SINE Alu -14 295 1 1334 223 156 74 chr15 72912472 72912485 -12783269 - L1ME3A LINE L1 -185 5985 5974 2362 78 0 3 chr15 72912485 72912793 -12782961 - AluY SINE Alu -4 307 1 1334 223 156 74 chr15 72912793 72913147 -12782607 - L1ME3A LINE L1 -196 5974 5552 21 36 0 0 chr15 72913149 72913177 -12782577 + AT_rich Low_complexity Low_complexity 1 28 0 8627 225 83 19 chr15 72913180 72913332 -12782422 - L1ME1 LINE L1 -341 6219 6078 2371 69 3 0 chr15 72913332 72913636 -12782118 - AluY SINE Alu -6 305 1 8627 225 83 19 chr15 72913636 72915626 -12780128 - L1ME1 LINE L1 -482 6078 4215 2185 107 3 0 chr15 72915626 72915936 -12779818 - AluY SINE Alu 0 311 1 8627 225 83 19 chr15 72915936 72916213 -12779541 - L1ME1 LINE L1 -2345 4215 3957 2304 161 10 0 chr15 72916213 72916599 -12779155 + MLT1B LTR MaLR 1 390 0 8627 225 83 19 chr15 72916599 72917477 -12778277 - L1ME1 LINE L1 -2603 3957 2723 2156 105 0 25 chr15 72917484 72917798 -12777956 - AluY SINE Alu -5 306 1 988 114 0 40 chr15 72917798 72917947 -12777807 - AluSg SINE Alu -167 143 1 2230 69 7 0 chr15 72917951 72918242 -12777512 - AluSp SINE Alu -20 293 1 1216 247 77 36 chr15 72918242 72918314 -12777440 - L1ME1 LINE L1 -3890 2650 2582 1801 151 3 22 chr15 72918314 72918626 -12777128 - AluJb SINE Alu -6 306 1 1216 247 77 36 chr15 72918626 72919261 -12776493 - L1ME1 LINE L1 -3958 2582 1997 323 243 45 18 chr15 72919261 72919372 -12776382 + L1MA9 LINE L1 6156 6269 -43 1025 263 106 65 chr15 72919409 72919813 -12775941 - L1ME1 LINE L1 -4684 2037 1651 2285 95 6 13 chr15 72919813 72920128 -12775626 - AluSq SINE Alu 0 313 1 1025 263 106 65 chr15 72920128 72920773 -12774981 - L1ME1 LINE L1 -5070 1651 910 258 32 0 0 chr15 72921088 72921119 -12774635 + (GA)n Simple_repeat Simple_repeat 1 31 0 468 332 30 33 chr15 72921303 72921607 -12774147 - L1ME1 LINE L1 -6209 331 29 198 0 0 0 chr15 72922740 72922762 -12772992 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 72923312 72923333 -12772421 + AT_rich Low_complexity Low_complexity 1 21 0 2340 75 0 13 chr15 72923974 72924281 -12771473 + AluY SINE Alu 1 303 -8 928 283 148 19 chr15 72924837 72925162 -12770592 + L2 LINE L2 2928 3294 -19 1690 178 0 3 chr15 72925273 72925582 -12770172 + AluJo SINE Alu 5 312 0 204 271 85 0 chr15 72926428 72926487 -12769267 - L2 LINE L2 -14 3258 3195 1982 90 4 0 chr15 72927099 72927366 -12768388 + AluY SINE Alu 12 279 -32 216 0 0 0 chr15 72927374 72927398 -12768356 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4200 76 12 3 chr15 72927582 72928148 -12767606 - L1PA13 LINE L1 -8 6155 5585 757 173 6 65 chr15 72928913 72929081 -12766673 + MER5A DNA MER1_type 32 189 0 399 268 104 44 chr15 72929173 72929356 -12766398 - L2 LINE L2 0 3313 3120 2290 168 16 0 chr15 72930460 72930847 -12764907 + MER57A LTR ERV1 10 402 -1 455 285 17 17 chr15 72931242 72931414 -12764340 + MER5B DNA MER1_type 4 175 -3 314 319 132 20 chr15 72931766 72932217 -12763537 - L2 LINE L2 -218 3054 2553 252 0 0 0 chr15 72932369 72932399 -12763355 + (TG)n Simple_repeat Simple_repeat 1 58 0 252 0 0 0 chr15 72932399 72932427 -12763327 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 312 0 13 chr15 72933387 72933415 -12762339 + GA-rich Low_complexity Low_complexity 2 29 -124 219 36 0 0 chr15 72933415 72933443 -12762311 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 312 0 13 chr15 72933443 72933568 -12762186 + GA-rich Low_complexity Low_complexity 29 153 0 266 267 22 28 chr15 72933512 72933692 -12762062 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 * 243 303 0 27 chr15 72933608 72933760 -12761994 + GA-rich Low_complexity Low_complexity 1 149 -31 * 198 0 0 0 chr15 72933760 72933782 -12761972 + (TG)n Simple_repeat Simple_repeat 1 22 0 243 303 0 27 chr15 72933782 72933814 -12761940 + GA-rich Low_complexity Low_complexity 149 180 0 359 260 0 45 chr15 72933838 72933868 -12761886 + GA-rich Low_complexity Low_complexity 2 32 -138 234 0 0 0 chr15 72933868 72933894 -12761860 + (TG)n Simple_repeat Simple_repeat 1 26 0 359 260 0 45 chr15 72933894 72933976 -12761778 + GA-rich Low_complexity Low_complexity 32 116 -54 198 0 0 0 chr15 72933976 72933998 -12761756 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 260 0 45 chr15 72933998 72934028 -12761726 + GA-rich Low_complexity Low_complexity 116 138 -32 180 0 0 0 chr15 72934028 72934048 -12761706 + (TG)n Simple_repeat Simple_repeat 1 20 0 359 260 0 45 chr15 72934048 72934080 -12761674 + GA-rich Low_complexity Low_complexity 138 170 0 356 103 0 15 chr15 72934081 72934149 -12761605 + (TG)n Simple_repeat Simple_repeat 2 68 0 1894 119 0 30 chr15 72934163 72934485 -12761269 + AluSx SINE Alu 1 313 0 1180 158 57 0 chr15 72934610 72934856 -12760898 - L1MA8 LINE L1 -6 6285 6026 1069 157 19 19 chr15 72934906 72935116 -12760638 - L1MA8 LINE L1 -237 6054 5845 272 286 12 24 chr15 72935219 72935303 -12760451 - MIR SINE MIR -99 163 81 541 300 72 18 chr15 72936755 72936978 -12758776 - MIR SINE MIR -22 240 6 268 273 102 28 chr15 72938289 72938465 -12757289 + MER67A LTR ERV1 338 526 -17 2228 82 17 0 chr15 72938659 72938951 -12756803 + AluSx SINE Alu 1 297 -15 2482 47 0 0 chr15 72939045 72939341 -12756413 + AluY SINE Alu 1 296 -15 386 198 97 58 chr15 72939665 72939911 -12755843 + L1ME LINE L1 5284 5496 -670 21 36 0 0 chr15 72940539 72940567 -12755187 + AT_rich Low_complexity Low_complexity 1 28 0 367 268 77 11 chr15 72940589 72940771 -12754983 - MIR SINE MIR -46 216 22 228 262 0 0 chr15 72941093 72941154 -12754600 - L1ME4a LINE L1 -96 6025 5965 1470 214 128 33 chr15 72941757 72942178 -12753576 + MLT1C LTR MaLR 7 467 0 2627 146 22 28 chr15 72942219 72942678 -12753076 - LTR32 LTR ERVL 0 471 16 904 247 119 12 chr15 72942756 72943007 -12752747 + MLT1K LTR MaLR 234 511 -77 189 0 0 0 chr15 72943282 72943303 -12752451 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 428 296 28 21 chr15 72943535 72943677 -12752077 - MIR SINE MIR -90 172 30 * 465 233 173 13 chr15 72943670 72943820 -12751934 + MER5A DNA MER1_type 10 183 -6 215 162 0 0 chr15 72944717 72944754 -12751000 - MER5A DNA MER1_type -122 67 31 213 289 92 0 chr15 72944786 72944862 -12750892 + MIR SINE MIR 77 159 -103 409 208 56 62 chr15 72944900 72945078 -12750676 - MER5B DNA MER1_type 0 178 2 378 261 78 0 chr15 72945151 72945266 -12750488 + MER5C DNA MER1_type 1 124 -200 335 244 43 61 chr15 72945463 72945501 -12750253 - MIR SINE MIR -64 198 161 2363 80 0 0 chr15 72945501 72945803 -12749951 - AluY SINE Alu -9 302 1 335 244 43 61 chr15 72945803 72945879 -12749875 - MIR SINE MIR -101 161 86 966 218 92 37 chr15 72945898 72946169 -12749585 + MER45C DNA AcHobo 2 287 -666 895 219 143 24 chr15 72946232 72946442 -12749312 + MER45C DNA AcHobo 719 953 0 2025 100 55 0 chr15 72946455 72946746 -12749008 - AluSx SINE Alu -4 308 2 271 194 14 27 chr15 72947059 72947129 -12748625 + MIR SINE MIR 8 64 -144 2485 52 0 3 chr15 72947129 72947439 -12748315 - AluY SINE Alu -2 309 1 271 194 14 27 chr15 72947439 72947519 -12748235 + MIR SINE MIR 64 144 -64 527 281 185 0 chr15 72947591 72947737 -12748017 + MER5A DNA MER1_type 16 188 -1 213 215 129 43 chr15 72948144 72948237 -12747517 + L2 LINE L2 3168 3268 -4 2164 75 17 3 chr15 72948577 72948869 -12746885 + AluSq SINE Alu 1 296 -17 526 136 226 39 chr15 72948921 72949076 -12746678 - MER5A DNA MER1_type -4 185 2 235 304 54 54 chr15 72949092 72949316 -12746438 - L2 LINE L2 -145 3127 2904 492 295 138 19 chr15 72949325 72949535 -12746219 - MLT1J LTR MaLR -14 497 263 2138 133 141 101 chr15 72949571 72949925 -12745829 + MER44D DNA MER2_type 4 342 -2145 2211 101 0 0 chr15 72949925 72950222 -12745532 - AluY SINE Alu -14 297 1 2138 133 141 101 chr15 72950222 72950257 -12745497 + MER44D DNA MER2_type 342 374 -2113 2061 111 0 0 chr15 72950257 72950536 -12745218 - AluSx SINE Alu -33 279 1 2138 133 141 101 chr15 72950536 72950662 -12745092 + MER44D DNA MER2_type 374 596 -9 269 239 55 55 chr15 72950777 72950886 -12744868 - MLT1J LTR MaLR -378 133 25 271 284 0 49 chr15 72951109 72951211 -12744543 + CT-rich Low_complexity Low_complexity 3 99 0 2269 80 0 3 chr15 72951459 72951760 -12743994 + AluSc SINE Alu 1 300 -9 22 35 0 0 chr15 72953049 72953078 -12742676 + AT_rich Low_complexity Low_complexity 1 29 0 204 209 0 0 chr15 72953140 72953183 -12742571 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 266 271 149 0 chr15 72953183 72953290 -12742464 - L2 LINE L2 0 3313 3191 457 283 20 22 chr15 72953293 72953466 -12742288 - MER20B DNA MER1_type -1 218 43 1822 148 69 37 chr15 72953589 72953747 -12742007 - MLT1B LTR MaLR 0 390 238 180 0 0 0 chr15 72953747 72953767 -12741987 + (TCC)n Simple_repeat Simple_repeat 1 20 0 1822 148 69 37 chr15 72953767 72953986 -12741768 - MLT1B LTR MaLR -152 238 1 563 260 108 68 chr15 72954085 72954381 -12741373 + LTR67 LTR ERVL 242 549 -8 289 284 88 40 chr15 72954694 72954842 -12740912 + MIR3 SINE MIR 36 190 -18 518 229 90 0 chr15 72955085 72955229 -12740525 - MER103 DNA DNA -2 164 8 1869 150 0 0 chr15 72956229 72956516 -12739238 + AluJo SINE Alu 1 287 -25 180 0 0 0 chr15 72957090 72957110 -12738644 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1884 108 4 18 chr15 72957114 72957393 -12738361 - AluSx SINE Alu -37 275 1 1107 139 6 0 chr15 72957628 72957793 -12737961 + AluSg/x SINE Alu 135 300 -10 1924 160 39 14 chr15 72957796 72958152 -12737602 - MLT1A1 LTR MaLR 0 365 1 217 299 99 83 chr15 72958208 72958522 -12737232 - L2 LINE L2 -6 3266 2948 270 0 0 0 chr15 72958803 72958833 -12736921 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2100 108 0 3 chr15 72958835 72959123 -12736631 - AluSx SINE Alu -25 287 1 352 310 98 43 chr15 72959153 72959337 -12736417 - MIR3 SINE MIR -14 194 1 2196 160 53 5 chr15 72959356 72959768 -12735986 - MSTB1 LTR MaLR 0 432 1 462 240 104 8 chr15 72959793 72959918 -12735836 + MER20 DNA MER1_type 83 219 0 297 308 67 19 chr15 72960763 72960971 -12734783 - L1ME4a LINE L1 -161 5960 5743 403 189 0 42 chr15 72961028 72961123 -12734631 - MER20 DNA MER1_type -2 217 127 248 120 100 20 chr15 72961956 72962006 -12733748 - MSTB1 LTR MaLR -264 168 115 308 222 125 44 chr15 72962355 72962487 -12733267 + MIR SINE MIR 3 145 -63 1534 160 0 108 chr15 72962732 72962926 -12732828 - AluJb SINE Alu -6 296 151 2293 86 0 13 chr15 72962926 72963241 -12732513 - AluY SINE Alu 0 311 1 1534 160 0 108 chr15 72963241 72963378 -12732376 - AluJb SINE Alu -151 151 1 264 184 220 64 chr15 72963662 72963771 -12731983 + LTR67 LTR ERVL 19 144 -413 541 283 36 55 chr15 72964027 72964356 -12731398 - L1MC4 LINE L1 0 8042 7720 597 282 44 40 chr15 72964620 72964847 -12730907 + MIR SINE MIR 12 239 -23 2009 147 0 0 chr15 72965043 72965350 -12730404 + AluJo SINE Alu 1 307 -5 473 297 113 11 chr15 72965438 72965623 -12730131 - MIR SINE MIR -22 240 37 2118 68 27 20 chr15 72966029 72966322 -12729432 - AluY SINE Alu -16 295 1 304 188 0 14 chr15 72966755 72966824 -12728930 - L1MC3 LINE L1 -232 7553 7486 2168 86 20 0 chr15 72967021 72967323 -12728431 + AluSp SINE Alu 6 313 0 275 323 0 0 chr15 72967391 72967487 -12728267 + MLT1F1 LTR MaLR 36 131 -436 2657 196 23 23 chr15 72967501 72968074 -12727680 + L1MC3 LINE L1 7213 7785 0 198 0 0 0 chr15 72968121 72968143 -12727611 + (T)n Simple_repeat Simple_repeat 1 22 0 3591 58 0 2 chr15 72968670 72969119 -12726635 - LTR7 LTR ERV1 -2 448 1 313 318 34 17 chr15 72969347 72969466 -12726288 + MIR SINE MIR 32 159 -49 2270 90 0 0 chr15 72969501 72969802 -12725952 - AluSx SINE Alu -11 301 1 194 88 0 29 chr15 72969872 72969906 -12725848 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 2431 26 30 3 chr15 72970982 72971285 -12724469 + AluY SINE Alu 1 311 0 680 291 62 25 chr15 72971318 72971641 -12724113 + L1ME4a LINE L1 5490 5824 -297 2648 163 38 13 chr15 72971657 72971671 -12724083 + LTR32 LTR ERVL 14 26 -445 3067 148 80 0 chr15 72971671 72972184 -12723570 - MER41C LTR ERV1 0 554 1 2648 163 38 13 chr15 72972184 72972616 -12723138 + LTR32 LTR ERVL 26 471 0 264 179 89 105 chr15 72972694 72972884 -12722870 + L1ME4a LINE L1 5934 6120 -1 2354 48 0 3 chr15 72974696 72974987 -12720767 + AluY SINE Alu 3 292 -19 379 340 98 31 chr15 72974999 72975355 -12720399 + L2 LINE L2 2809 3188 -84 22 70 0 0 chr15 72975656 72975699 -12720055 + AT_rich Low_complexity Low_complexity 1 43 0 584 244 31 25 chr15 72975993 72976153 -12719601 - MIR SINE MIR -14 248 88 597 115 19 10 chr15 72976158 72976262 -12719492 - LTR37A LTR ERV1 -13 413 309 346 231 67 0 chr15 72976270 72976374 -12719380 - LTR37A LTR ERV1 -259 167 57 678 50 0 0 chr15 72976537 72976617 -12719137 - MADE1 DNA Mariner 0 80 1 204 243 185 25 chr15 72976785 72976903 -12718851 - MIR SINE MIR -50 158 33 2016 115 17 0 chr15 72977275 72977562 -12718192 + AluSx SINE Alu 2 293 -19 437 313 157 5 chr15 72977885 72978083 -12717671 + MIR SINE MIR 33 260 -2 716 218 23 11 chr15 72978084 72978258 -12717496 + MER104 DNA MER2_type 2 177 -3 2355 65 0 10 chr15 72979598 72979907 -12715847 - AluY SINE Alu -5 306 1 1060 81 0 0 chr15 72979907 72980043 -12715711 - AluSq/x SINE Alu -176 137 2 187 246 159 29 chr15 72981533 72981602 -12714152 - L2 LINE L2 -3 3269 3192 2090 185 8 8 chr15 72981830 72982219 -12713535 - MLT1B LTR MaLR 0 390 2 558 136 32 64 chr15 72982452 72982577 -12713177 + L1MB5 LINE L1 6046 6166 -8 225 0 0 0 chr15 72982583 72982608 -12713146 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2431 76 0 0 chr15 72982721 72983025 -12712729 + AluSq SINE Alu 2 305 -8 440 330 82 14 chr15 72983104 72983386 -12712368 + L1ME4a LINE L1 2110 2410 -3736 316 272 179 36 chr15 72983398 72983593 -12712161 - MIR SINE MIR -1 261 39 724 298 145 65 chr15 72983749 72984522 -12711232 + L1ME4a LINE L1 2735 3569 -2577 407 295 39 39 chr15 72984922 72985176 -12710578 + L1ME4a LINE L1 4385 4638 -1508 236 259 68 40 chr15 72985435 72985615 -12710139 + L1P5 LINE L1 5365 5553 -598 324 278 160 19 chr15 72985643 72985710 -12710044 + L1ME4a LINE L1 5588 5644 -477 405 0 0 0 chr15 72985710 72985755 -12709999 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 324 278 160 19 chr15 72985755 72986155 -12709599 + L1ME4a LINE L1 5644 6121 0 1461 172 57 0 chr15 72986224 72986536 -12709218 + AluJb SINE Alu 1 312 0 338 262 98 67 chr15 72986693 72986908 -12708846 + L1ME4a LINE L1 5263 5477 -688 320 213 0 64 chr15 72986958 72987052 -12708702 + L1ME4a LINE L1 5962 6049 -72 216 239 211 46 chr15 72987622 72987731 -12708023 - L3 LINE CR1 -182 1395 1269 465 268 148 40 chr15 72987731 72987981 -12707773 - L1ME4a LINE L1 -25 6096 5820 2206 88 0 0 chr15 72987993 72988302 -12707452 - AluSx SINE Alu 0 309 1 231 213 93 13 chr15 72988383 72988458 -12707296 + MIR SINE MIR 164 244 -18 2304 64 0 0 chr15 72988743 72989060 -12706694 + AluY SINE Alu 1 317 0 2240 88 0 0 chr15 72989695 72989991 -12705763 - AluSg SINE Alu -14 296 1 703 254 18 118 chr15 72990340 72990612 -12705142 + MIR SINE MIR 1 245 -17 258 339 49 44 chr15 72990614 72990797 -12704957 - MIR SINE MIR -74 188 5 207 270 0 48 chr15 72992220 72992283 -12703471 + MIR3 SINE MIR 148 207 -1 186 341 91 23 chr15 72992383 72992515 -12703239 + MIR SINE MIR 111 251 -11 1196 105 0 21 chr15 72993443 72993633 -12702121 - L1MA4A LINE L1 -2 6301 6116 2336 71 13 6 chr15 72993633 72993944 -12701810 + AluSp SINE Alu 1 313 0 4190 97 0 3 chr15 72993964 72994541 -12701213 + L1PB1 LINE L1 5577 6151 0 1924 135 64 3 chr15 72994557 72994883 -12700871 - L1MA4A LINE L1 -176 6127 5782 248 306 47 12 chr15 72996137 72996222 -12699532 - MIR SINE MIR -115 147 60 1504 225 31 0 chr15 72996306 72996626 -12699128 - MER58B DNA MER1_type -2 339 10 2170 124 0 0 chr15 72996718 72997024 -12698730 + AluSx SINE Alu 1 306 -6 2342 54 3 42 chr15 72997024 72997337 -12698417 + AluY SINE Alu 1 301 -10 201 147 0 0 chr15 72997639 72997673 -12698081 + (T)n Simple_repeat Simple_repeat 1 34 0 246 297 0 0 chr15 72998137 72998201 -12697553 + MIR SINE MIR 87 150 -112 213 294 0 44 chr15 72998952 72999020 -12696734 - MIR SINE MIR -188 74 10 180 243 0 0 chr15 72999448 72999485 -12696269 + MIR SINE MIR 152 188 -74 2090 123 3 0 chr15 72999553 72999861 -12695893 - AluSx SINE Alu -3 309 1 1733 172 0 7 chr15 72999901 73000204 -12695550 + AluJb SINE Alu 7 307 -5 276 281 184 26 chr15 73000411 73000452 -12695302 + MIR SINE MIR 104 137 -125 1884 117 57 0 chr15 73000452 73000733 -12695021 - AluSx SINE Alu -15 297 1 276 281 184 26 chr15 73000733 73000805 -12694949 + MIR SINE MIR 137 235 -27 254 229 0 8 chr15 73002406 73002524 -12693230 + (TG)n Simple_repeat Simple_repeat 1 117 0 387 285 89 8 chr15 73002643 73002766 -12692988 - MIR SINE MIR -70 192 60 677 203 26 4 chr15 73003869 73004113 -12691641 + CT-rich Low_complexity Low_complexity 1 249 0 540 296 83 62 chr15 73004394 73005179 -12690575 - L2 LINE L2 -45 3268 2455 2417 153 25 46 chr15 73005179 73005471 -12690283 - MLT1C LTR MaLR 0 467 187 2390 67 3 10 chr15 73005471 73005784 -12689970 - AluY SINE Alu 0 311 1 2417 153 25 46 chr15 73005784 73005968 -12689786 - MLT1C LTR MaLR -280 187 1 540 296 83 62 chr15 73005968 73006114 -12689640 - L2 LINE L2 -858 2455 2313 * 626 343 134 32 chr15 73006109 73006243 -12689511 - L2 LINE L2 0 3272 3153 2179 137 129 5 chr15 73006243 73006624 -12689130 + MSTA LTR MaLR 1 428 0 626 343 134 32 chr15 73006624 73007419 -12688335 - L2 LINE L2 -119 3153 2248 367 310 87 35 chr15 73007484 73007713 -12688041 - L2 LINE L2 -1801 1513 1273 201 315 0 0 chr15 73007798 73007852 -12687902 + (CATA)n Simple_repeat Simple_repeat 4 57 0 2173 73 0 7 chr15 73008580 73008893 -12686861 - AluY SINE Alu 0 311 1 403 284 0 17 chr15 73008931 73009047 -12686707 - MIR SINE MIR -146 116 3 232 286 102 20 chr15 73009966 73010064 -12685690 + MIR SINE MIR 40 145 -117 182 274 107 12 chr15 73010455 73010539 -12685215 + L2 LINE L2 1435 1526 -1788 2570 42 0 0 chr15 73011050 73011356 -12684398 + AluY SINE Alu 1 306 -5 626 203 30 8 chr15 73011456 73011589 -12684165 - MIR SINE MIR -20 242 107 184 167 95 24 chr15 73011800 73011842 -12683912 + L2 LINE L2 3264 3308 -5 183 80 0 0 chr15 73011952 73011977 -12683777 + (A)n Simple_repeat Simple_repeat 1 25 0 297 356 83 19 chr15 73013053 73013258 -12682496 + L2 LINE L2 2854 3071 -201 598 307 18 6 chr15 73013335 73013498 -12682256 + MIR SINE MIR 47 211 -51 1366 246 79 36 chr15 73013502 73013945 -12681809 + MLT1C LTR MaLR 6 467 0 282 312 80 43 chr15 73014011 73014149 -12681605 + L2 LINE L2 3109 3251 -21 240 340 66 9 chr15 73014696 73014802 -12680952 - MIR SINE MIR -128 134 23 964 264 84 20 chr15 73014849 73015205 -12680549 - L1MEc LINE L1 -4454 1942 1564 23 33 0 0 chr15 73015208 73015238 -12680516 + AT_rich Low_complexity Low_complexity 1 30 0 2245 71 7 3 chr15 73015310 73015607 -12680147 + AluY SINE Alu 1 298 -13 40 0 0 0 chr15 73015712 73015752 -12680002 + AT_rich Low_complexity Low_complexity 1 40 0 632 245 31 138 chr15 73016795 73017122 -12678632 + MER102b DNA MER1_type 1 292 -49 1307 77 0 0 chr15 73017206 73017398 -12678356 + AluSg/x SINE Alu 131 312 0 496 273 169 7 chr15 73017765 73017919 -12677835 + MER5A DNA MER1_type 10 188 -1 805 196 13 6 chr15 73017928 73018086 -12677668 + MER5B DNA MER1_type 1 159 -19 542 274 17 23 chr15 73018108 73018283 -12677471 + MER5B DNA MER1_type 5 178 0 227 391 73 0 chr15 73018426 73018536 -12677218 + L2 LINE L2 3145 3262 -10 4082 96 11 40 chr15 73018574 73019048 -12676706 + MER4A LTR ERV1 1 487 -113 2209 105 0 3 chr15 73019048 73019352 -12676402 + AluSg SINE Alu 1 303 -7 2270 78 7 0 chr15 73019360 73019667 -12676087 + AluY SINE Alu 1 309 -2 4082 96 11 40 chr15 73019667 73019801 -12675953 + MER4A LTR ERV1 494 600 0 262 302 70 16 chr15 73019828 73019957 -12675797 - L2 LINE L2 -615 2699 2564 2150 125 98 24 chr15 73020032 73020220 -12675534 - MLT1C LTR MaLR -62 405 232 342 0 0 0 chr15 73020220 73020258 -12675496 + (TG)n Simple_repeat Simple_repeat 1 38 0 2150 125 98 24 chr15 73020258 73020331 -12675423 - MLT1C LTR MaLR -235 232 166 3407 192 56 25 chr15 73020331 73020855 -12674899 - MER50 LTR ERV1 0 734 181 2164 86 0 52 chr15 73020855 73021182 -12674572 + AluSg SINE Alu 1 310 0 3407 192 56 25 chr15 73021182 73021369 -12674385 - MER50 LTR ERV1 -553 181 1 2150 125 98 24 chr15 73021369 73021483 -12674271 - MLT1C LTR MaLR -301 166 1 2394 43 13 3 chr15 73023204 73023503 -12672251 + AluY SINE Alu 1 302 -9 184 289 79 0 chr15 73025122 73025198 -12670556 + MIR SINE MIR 110 191 -71 1849 80 0 8 chr15 73025619 73025868 -12669886 - L1PB1 LINE L1 0 6151 5905 815 181 88 74 chr15 73026662 73026878 -12668876 + MER20 DNA MER1_type 1 219 0 2440 64 0 0 chr15 73027062 73027373 -12668381 + AluY SINE Alu 1 311 0 27 0 0 0 chr15 73027373 73027400 -12668354 + AT_rich Low_complexity Low_complexity 1 27 0 241 0 0 32 chr15 73027460 73027491 -12668263 + L1MC1 LINE L1 6286 6315 -18 1040 151 5 19 chr15 73027787 73027993 -12667761 - L1MA4 LINE L1 0 6300 6098 213 311 39 72 chr15 73028122 73028140 -12667614 + MIR3 SINE MIR 28 45 -163 1607 211 0 0 chr15 73028140 73028444 -12667310 - AluJb SINE Alu -8 304 1 213 311 39 72 chr15 73028444 73028605 -12667149 + MIR3 SINE MIR 45 201 -7 395 241 101 54 chr15 73029331 73029540 -12666214 + MLT1H LTR MaLR 331 547 -2 2197 101 3 0 chr15 73029718 73030024 -12665730 - AluSg SINE Alu -3 307 1 570 309 37 37 chr15 73031376 73031622 -12664132 - MIR SINE MIR -6 256 11 462 207 25 50 chr15 73032068 73032189 -12663565 + MLT1J2 LTR MaLR 329 446 -4 1784 91 28 0 chr15 73032527 73032780 -12662974 + AluSp SINE Alu 44 303 -10 3864 125 62 7 chr15 73033456 73033576 -12662178 - MER41B LTR ERV1 0 635 523 1987 112 16 26 chr15 73033576 73033888 -12661866 + AluSg1 SINE Alu 1 309 0 3864 125 62 7 chr15 73033888 73034369 -12661385 - MER41B LTR ERV1 -112 523 1 491 209 94 113 chr15 73034734 73034918 -12660836 + LTR15 LTR ERV1 113 299 -194 2330 66 0 0 chr15 73034918 73035205 -12660549 + AluY SINE Alu 3 289 -22 491 209 94 113 chr15 73035205 73035402 -12660352 + LTR15 LTR ERV1 299 487 -6 1687 88 22 0 chr15 73035409 73035635 -12660119 + L1PA12 LINE L1 5788 6018 -150 967 153 10 74 chr15 73035696 73035862 -12659892 - MER20 DNA MER1_type -5 214 62 2457 55 0 7 chr15 73035862 73036171 -12659583 + AluY SINE Alu 1 307 -4 967 153 10 74 chr15 73036171 73036207 -12659547 - MER20 DNA MER1_type -157 62 25 878 204 164 0 chr15 73036219 73036493 -12659261 - MER33 DNA MER1_type 0 324 6 216 0 0 0 chr15 73036563 73036587 -12659167 + (T)n Simple_repeat Simple_repeat 1 24 0 301 327 8 28 chr15 73037265 73037406 -12658348 - MIR SINE MIR -32 176 38 2083 108 7 3 chr15 73037445 73037740 -12658014 - AluSx SINE Alu -16 296 1 508 209 9 0 chr15 73037822 73037932 -12657822 - L1MD3 LINE L1 -8 7987 7877 2105 104 3 7 chr15 73037937 73038244 -12657510 + AluY SINE Alu 1 306 -5 290 141 0 16 chr15 73038739 73038803 -12656951 + (TG)n Simple_repeat Simple_repeat 2 64 0 369 242 138 48 chr15 73039959 73040182 -12655572 + MIR SINE MIR 3 256 -6 1900 98 52 3 chr15 73040444 73040730 -12655024 + AluSc SINE Alu 1 300 -9 2269 85 0 3 chr15 73041215 73041510 -12654244 + AluY SINE Alu 1 294 -17 263 250 219 31 chr15 73042047 73042143 -12653611 + L3 LINE CR1 1348 1461 -116 251 260 53 71 chr15 73042206 73042349 -12653405 + MER5B DNA MER1_type 5 149 -29 219 227 40 13 chr15 73042533 73042608 -12653146 + CT-rich Low_complexity Low_complexity 5 81 0 246 323 15 0 chr15 73043128 73043193 -12652561 - L2 LINE L2 0 3272 3207 2374 65 0 7 chr15 73043512 73043820 -12651934 - AluY SINE Alu -5 306 1 191 359 135 6 chr15 73043901 73044071 -12651683 + MIR SINE MIR 66 257 -5 2455 45 0 6 chr15 73044078 73044390 -12651364 + AluY SINE Alu 1 310 -1 2382 53 0 3 chr15 73044440 73044739 -12651015 + AluY SINE Alu 1 298 -13 2280 67 0 13 chr15 73044870 73045184 -12650570 + AluY SINE Alu 1 310 -1 1886 171 52 42 chr15 73046209 73046595 -12649159 - MLT1B LTR MaLR 0 390 1 290 253 0 11 chr15 73046886 73046981 -12648773 + (CA)n Simple_repeat Simple_repeat 2 95 0 450 140 30 0 chr15 73049253 73049353 -12646401 + GA-rich Low_complexity Low_complexity 2 104 0 1158 179 0 42 chr15 73049471 73049683 -12646071 - Tigger7 DNA MER2_type -529 204 2 201 273 0 39 chr15 73050420 73050497 -12645257 + GA-rich Low_complexity Low_complexity 2 75 0 285 328 127 31 chr15 73050553 73050782 -12644972 - MIR SINE MIR -4 258 8 277 306 88 47 chr15 73051302 73051472 -12644282 - MIR SINE MIR -74 188 12 563 195 39 0 chr15 73051713 73051841 -12643913 - L1MB8 LINE L1 0 6178 6046 607 275 115 9 chr15 73052005 73052281 -12643473 - L1ME4a LINE L1 -248 5916 5601 22 0 0 0 chr15 73052356 73052378 -12643376 + AT_rich Low_complexity Low_complexity 1 22 0 549 328 78 40 chr15 73053083 73053455 -12642299 - MLT1K LTR MaLR 0 588 203 2189 106 0 0 chr15 73053639 73053941 -12641813 - AluY SINE Alu -9 302 1 271 239 28 83 chr15 73053943 73054052 -12641702 - MLT1K LTR MaLR -376 212 110 197 344 0 0 chr15 73054096 73054160 -12641594 - L3 LINE CR1 -73 1504 1441 1177 134 15 48 chr15 73054196 73054321 -12641433 - MER2 DNA MER2_type 0 345 217 2232 83 0 0 chr15 73054321 73054611 -12641143 + AluSg SINE Alu 1 290 -20 1177 134 15 48 chr15 73054611 73054764 -12640990 - MER2 DNA MER2_type -128 217 1 3813 89 39 13 chr15 73055184 73055724 -12640030 + MER41A LTR ERV1 1 554 0 208 175 25 0 chr15 73056496 73056536 -12639218 + GA-rich Low_complexity Low_complexity 1 41 0 182 205 308 0 chr15 73056961 73057039 -12638715 + L2 LINE L2 3191 3292 -21 195 346 0 0 chr15 73057053 73057105 -12638649 - MIR SINE MIR -105 157 106 3529 175 104 6 chr15 73057409 73058108 -12637646 + Charlie1 DNA MER1_type 1855 2643 -118 2273 80 0 3 chr15 73058108 73058410 -12637344 + AluY SINE Alu 5 305 -6 3529 175 104 6 chr15 73058410 73058505 -12637249 + Charlie1 DNA MER1_type 2643 2727 -34 497 300 65 53 chr15 73058543 73058883 -12636871 + L1M4 LINE L1 5259 5606 -572 2226 74 43 0 chr15 73058883 73059182 -12636572 - AluSp SINE Alu -1 312 1 497 300 65 53 chr15 73059182 73059238 -12636516 + L1M4 LINE L1 5606 5660 -518 1819 194 81 21 chr15 73059525 73059958 -12635796 - MLT1C LTR MaLR 0 467 9 234 0 0 0 chr15 73060215 73060241 -12635513 + (T)n Simple_repeat Simple_repeat 1 26 0 1203 123 0 0 chr15 73060241 73060412 -12635342 + AluSg/x SINE Alu 141 311 -1 442 354 13 18 chr15 73060413 73060639 -12635115 + L1MEd LINE L1 870 1094 -5436 290 264 95 62 chr15 73060707 73061070 -12634684 + L1MEd LINE L1 2441 2818 -3722 322 297 161 20 chr15 73061092 73061249 -12634505 + L1M4 LINE L1 3896 4029 -2117 2110 111 0 3 chr15 73061249 73061555 -12634199 - AluSx SINE Alu -7 305 1 322 297 161 20 chr15 73061555 73062140 -12633614 + L1M4 LINE L1 4029 4763 -1383 223 268 85 37 chr15 73062893 73062975 -12632779 + MIR SINE MIR 64 149 -59 26 0 0 0 chr15 73063889 73063915 -12631839 + AT_rich Low_complexity Low_complexity 1 26 0 2203 109 6 12 chr15 73063915 73064244 -12631510 - L1PB1 LINE L1 0 6151 5825 575 155 207 0 chr15 73064531 73064647 -12631107 - AluJb SINE Alu -171 141 2 207 0 0 0 chr15 73064769 73064792 -12630962 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 218 289 0 0 chr15 73064988 73065040 -12630714 - L2 LINE L2 -227 3045 2994 1552 219 64 42 chr15 73066123 73066576 -12629178 + MLT1C LTR MaLR 5 467 0 211 268 70 0 chr15 73066668 73066739 -12629015 + MIR3 SINE MIR 111 186 -22 339 314 43 43 chr15 73067335 73067542 -12628212 + L3 LINE CR1 1369 1575 -2 306 0 0 0 chr15 73067893 73067927 -12627827 + (CA)n Simple_repeat Simple_repeat 2 35 0 375 23 0 0 chr15 73067927 73067971 -12627783 + (GA)n Simple_repeat Simple_repeat 1 44 0 207 287 0 115 chr15 73068510 73068561 -12627193 - MIR3 SINE MIR -12 196 165 2577 50 3 0 chr15 73068561 73068863 -12626891 - AluY SINE Alu -8 303 1 207 287 0 115 chr15 73068863 73068933 -12626821 - MIR3 SINE MIR -43 165 89 549 203 0 130 chr15 73069867 73069929 -12625825 - MER5B DNA MER1_type -2 176 108 2214 115 0 10 chr15 73069929 73070233 -12625521 + AluSp SINE Alu 1 301 -12 1844 162 14 0 chr15 73070241 73070537 -12625217 + AluJb SINE Alu 1 300 -12 549 203 0 130 chr15 73070537 73070657 -12625097 - MER5B DNA MER1_type -77 101 10 212 225 75 50 chr15 73070667 73070747 -12625007 + MIR SINE MIR 163 244 -18 1078 104 33 33 chr15 73071541 73071724 -12624030 - L1MA5A LINE L1 -86 6211 6029 295 152 65 43 chr15 73071718 73071810 -12623944 + L1MA5A LINE L1 6205 6298 -2 * 2349 65 26 33 chr15 73073959 73074266 -12621488 + AluY SINE Alu 1 305 -6 283 254 0 76 chr15 73075456 73075574 -12620180 + MER46C DNA MER2_type 1 109 -229 2538 30 0 13 chr15 73075983 73076285 -12619469 + AluY SINE Alu 1 298 -13 23 0 0 0 chr15 73076324 73076347 -12619407 + AT_rich Low_complexity Low_complexity 1 23 0 14448 49 7 0 chr15 73076450 73078873 -12616881 - L1PA5 LINE L1 -136 6018 3578 1961 118 0 21 chr15 73078975 73079121 -12616633 - AluSx SINE Alu -36 276 137 2378 89 3 0 chr15 73079121 73079425 -12616329 - AluSg SINE Alu -5 305 1 1961 118 0 21 chr15 73079425 73079558 -12616196 - AluSx SINE Alu -175 137 3 315 190 0 0 chr15 73080085 73080143 -12615611 + MER46C DNA MER2_type 281 338 0 1635 163 46 54 chr15 73080722 73081090 -12614664 - MLT1A1 LTR MaLR 0 365 1 262 154 0 0 chr15 73081257 73081296 -12614458 - AluSq SINE Alu -139 164 126 480 104 0 0 chr15 73081296 73081373 -12614381 - Alu SINE Alu 0 309 233 417 212 35 0 chr15 73081808 73081893 -12613861 + ORSL DNA AcHobo 1 88 -187 1683 174 17 24 chr15 73081901 73082199 -12613555 + AluJb SINE Alu 1 296 -16 470 234 37 0 chr15 73082227 73082334 -12613420 + ORSL DNA AcHobo 165 275 0 38 39 0 0 chr15 73082570 73082622 -12613132 + AT_rich Low_complexity Low_complexity 1 52 0 28261 58 3 1 chr15 73082777 73086299 -12609455 - L1P LINE L1 -2605 3541 11 317 80 0 20 chr15 73086367 73086417 -12609337 + (TG)n Simple_repeat Simple_repeat 2 50 0 1248 222 33 52 chr15 73086421 73086727 -12609027 - AluJo SINE Alu -12 300 1 22 94 0 0 chr15 73087253 73087317 -12608437 + AT_rich Low_complexity Low_complexity 1 64 0 2220 131 0 0 chr15 73087468 73087781 -12607973 + AluSq SINE Alu 1 313 0 517 321 42 21 chr15 73087791 73088031 -12607723 + L1M4 LINE L1 2 246 -6296 611 117 0 43 chr15 73088248 73088342 -12607412 - AluSq SINE Alu -151 162 73 486 73 0 0 chr15 73088338 73088406 -12607348 - AluY SINE Alu -17 295 228 * 1962 39 4 4 chr15 73089054 73089287 -12606467 - AluY SINE Alu -78 233 1 204 40 0 0 chr15 73089343 73089368 -12606386 + (A)n Simple_repeat Simple_repeat 1 25 0 4040 128 14 20 chr15 73089900 73090019 -12605735 - MER41B LTR ERV1 0 635 517 2592 48 0 16 chr15 73090019 73090329 -12605425 + AluY SINE Alu 1 305 -6 4040 128 14 20 chr15 73090329 73090848 -12604906 - MER41B LTR ERV1 -118 517 1 242 355 32 0 chr15 73092474 73092598 -12603156 + L1ME LINE L1 5513 5640 -481 36 40 0 0 chr15 73092859 73092909 -12602845 + AT_rich Low_complexity Low_complexity 1 50 0 189 94 0 0 chr15 73093030 73093062 -12602692 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 2078 140 14 92 chr15 73093204 73093626 -12602128 + MLT1B LTR MaLR 1 389 -1 1661 105 3 147 chr15 73093779 73094132 -12601622 + AluSx SINE Alu 1 302 0 417 218 32 32 chr15 73094502 73094626 -12601128 - L2 LINE L2 -1 3271 3148 428 272 6 38 chr15 73096614 73096772 -12598982 - L2 LINE L2 -48 3265 3113 27 0 0 0 chr15 73097279 73097306 -12598448 + AT_rich Low_complexity Low_complexity 1 27 0 344 232 58 14 chr15 73098035 73098173 -12597581 + MIR SINE MIR 58 201 -61 349 278 100 45 chr15 73098470 73098851 -12596903 - L1MC5 LINE L1 -30 7931 7530 998 32 16 0 chr15 73098933 73099057 -12596697 - L1PA4 LINE L1 0 6155 6030 2527 54 0 0 chr15 73099314 73099612 -12596142 - AluY SINE Alu -13 298 1 3484 113 4 47 chr15 73100700 73101251 -12594503 + MER1A DNA MER1_type 1 527 0 2654 127 171 0 chr15 73101485 73101935 -12593819 - MER1A DNA MER1_type 0 527 1 2211 112 0 37 chr15 73104574 73104895 -12590859 + AluSc SINE Alu 1 309 0 307 372 29 0 chr15 73105017 73105189 -12590565 - MIR SINE MIR -66 196 20 204 296 128 16 chr15 73105231 73105356 -12590398 - MIR3 SINE MIR -65 143 5 201 348 22 11 chr15 73106119 73106211 -12589543 + L2 LINE L2 3180 3272 0 185 182 0 0 chr15 73106377 73106410 -12589344 + MIR SINE MIR 90 122 -140 2806 87 0 0 chr15 73106780 73107135 -12588619 - THE1A LTR MaLR 0 355 1 188 345 36 0 chr15 73107195 73107279 -12588475 + L2 LINE L2 3227 3313 0 2475 69 10 0 chr15 73109646 73109950 -12585804 - AluSp SINE Alu -6 307 1 2209 154 77 34 chr15 73110926 73111368 -12584386 - LOR1b LTR ERV1 0 461 1 468 262 56 0 chr15 73111530 73111656 -12584098 + MIR SINE MIR 25 157 -105 2202 109 0 0 chr15 73111921 73112237 -12583517 + AluSx SINE Alu 1 316 0 21 36 0 0 chr15 73112254 73112282 -12583472 + AT_rich Low_complexity Low_complexity 1 28 0 829 142 0 0 chr15 73112871 73112984 -12582770 + FLAM_C SINE Alu 12 124 -19 2271 98 0 16 chr15 73113065 73113371 -12582383 - AluSx SINE Alu -11 301 1 257 341 80 7 chr15 73113374 73113512 -12582242 - MIR SINE MIR -10 252 105 962 148 108 30 chr15 73114062 73114265 -12581489 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr15 73116981 73117022 -12578732 + (CA)n Simple_repeat Simple_repeat 2 42 0 313 288 72 9 chr15 73117229 73117340 -12578414 - MIR SINE MIR -72 190 73 2428 101 0 0 chr15 73118009 73118315 -12577439 - AluSg SINE Alu -4 306 1 288 244 70 47 chr15 73118613 73118699 -12577055 + MIR SINE MIR 12 99 -163 1819 179 3 3 chr15 73120315 73120616 -12575138 + AluJb SINE Alu 1 301 -11 254 288 99 36 chr15 73121008 73121119 -12574635 + L2 LINE L2 3141 3258 -14 2185 99 3 7 chr15 73121380 73121672 -12574082 - AluSq SINE Alu -13 300 10 2406 77 0 3 chr15 73121682 73121980 -12573774 - AluSp SINE Alu -7 306 10 2453 81 0 3 chr15 73121990 73122298 -12573456 - AluSp SINE Alu -6 307 1 201 250 0 0 chr15 73122498 73122542 -12573212 + L2 LINE L2 3262 3305 -8 5501 188 173 29 chr15 73122877 73124412 -12571342 - MER52A LTR ERV1 0 1755 1 883 174 0 0 chr15 73124437 73124586 -12571168 + Tigger2 DNA MER2_type 2570 2718 0 1059 278 126 15 chr15 73124588 73125177 -12570577 + Charlie8 DNA MER1_type 130 783 -1634 371 131 22 4 chr15 73125195 73125274 -12570480 + Alu SINE Alu 239 294 -6 6396 74 5 2 chr15 73125329 73126973 -12568781 - L1PA7 LINE L1 -45 6109 4460 1854 168 10 0 chr15 73127018 73127321 -12568433 - AluSx SINE Alu -6 306 1 296 309 39 44 chr15 73127388 73127405 -12568349 - L1ME LINE L1 -459 5662 5646 189 0 0 0 chr15 73127405 73127426 -12568328 + (TG)n Simple_repeat Simple_repeat 2 22 0 296 309 39 44 chr15 73127426 73127816 -12567938 - L1ME LINE L1 -475 5646 5265 280 330 29 40 chr15 73130741 73130914 -12564840 + MIR SINE MIR 43 213 -49 4162 185 28 27 chr15 73131103 73132690 -12563064 + L1MB8 LINE L1 4574 6162 -16 235 238 38 62 chr15 73132782 73132862 -12562892 + MIR SINE MIR 38 115 -93 198 0 0 0 chr15 73134582 73134604 -12561150 + (CA)n Simple_repeat Simple_repeat 2 23 0 623 221 0 24 chr15 73134728 73134855 -12560899 + L2 LINE L2 3185 3308 -5 2538 212 46 12 chr15 73135099 73135822 -12559932 + L1ME2 LINE L1 4531 5277 -869 2430 71 3 0 chr15 73135822 73136119 -12559635 - AluY SINE Alu -13 298 1 1238 210 52 21 chr15 73136123 73136451 -12559303 + L1ME2 LINE L1 5542 5879 -285 1070 247 41 9 chr15 73136495 73136811 -12558943 + L1ME2 LINE L1 5829 6154 -10 438 225 45 105 chr15 73137528 73137810 -12557944 - LTR16A1 LTR ERVL -6 451 204 1929 167 45 0 chr15 73138816 73139146 -12556608 + MER7A DNA MER2_type 1 343 -3 2241 107 3 0 chr15 73139200 73139491 -12556263 - AluSp SINE Alu -21 292 1 1597 154 4 14 chr15 73140021 73140300 -12555454 + L1MC1 LINE L1 6056 6331 -2 308 290 14 22 chr15 73140413 73140551 -12555203 + (TATATG)n Simple_repeat Simple_repeat 6 142 0 321 191 32 0 chr15 73140551 73140614 -12555140 + L1MC4 LINE L1 6652 6716 -1326 244 242 48 0 chr15 73141444 73141506 -12554248 + CT-rich Low_complexity Low_complexity 2 66 0 411 329 30 12 chr15 73141697 73141864 -12553890 + MIR SINE MIR 63 232 -30 321 254 26 21 chr15 73141890 73142033 -12553721 - MIR SINE MIR -76 132 15 2205 90 7 17 chr15 73142177 73142478 -12553276 + AluYa5 SINE Alu 1 298 -13 209 133 44 22 chr15 73143951 73143996 -12551758 - MIR SINE MIR -117 145 100 1868 115 0 0 chr15 73144039 73144292 -12551462 - AluSx SINE Alu 0 312 60 397 118 73 0 chr15 73144532 73144600 -12551154 + L1PA11 LINE L1 6100 6172 -2 204 111 0 0 chr15 73144620 73144656 -12551098 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 158 0 0 chr15 73144656 73144694 -12551060 + (TA)n Simple_repeat Simple_repeat 2 39 0 816 229 51 72 chr15 73144754 73145086 -12550668 - MLT2B1 LTR ERVL -195 325 1 1556 206 16 27 chr15 73145090 73145464 -12550290 + MLT1A2 LTR MaLR 4 373 -1 221 254 0 36 chr15 73147222 73147277 -12548477 + L2 LINE L2 3218 3270 -2 310 328 25 40 chr15 73148381 73148582 -12547172 - L2 LINE L2 -219 3053 2856 227 103 0 0 chr15 73148735 73148774 -12546980 - L1ME4a LINE L1 -119 6002 5964 530 214 0 14 chr15 73149305 73149445 -12546309 + L1M4 LINE L1 5074 5211 -935 450 185 33 0 chr15 73149459 73149551 -12546203 + MER44D DNA MER2_type 3 97 -608 2281 81 0 3 chr15 73149551 73149861 -12545893 + AluSq SINE Alu 1 309 0 850 168 13 13 chr15 73149861 73150039 -12545715 + AluSg/x SINE Alu 132 309 0 2552 163 128 13 chr15 73150044 73150597 -12545157 + MER44D DNA MER2_type 88 704 -1 587 333 127 34 chr15 73151144 73151624 -12544130 - L1M4 LINE L1 -1330 4816 4382 279 0 0 0 chr15 73151624 73151655 -12544099 + (TG)n Simple_repeat Simple_repeat 2 32 0 587 333 127 34 chr15 73151655 73151988 -12543766 - L1M4 LINE L1 -1764 4382 3928 325 276 0 51 chr15 73152785 73152883 -12542871 + MER5B DNA MER1_type 1 93 -85 473 251 113 49 chr15 73153220 73153467 -12542287 + ORSL DNA AcHobo 13 275 0 7959 167 92 81 chr15 73153628 73154184 -12541570 - L1MC3 LINE L1 -20 7765 7216 235 336 0 10 chr15 73154184 73154288 -12541466 - MLT1F1 LTR MaLR -428 139 37 7959 167 92 81 chr15 73154288 73154342 -12541412 - L1MC3 LINE L1 -569 7216 7164 186 103 0 0 chr15 73154342 73154371 -12541383 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7959 167 92 81 chr15 73154371 73154635 -12541119 - L1MC3 LINE L1 -621 7164 6904 189 0 0 0 chr15 73154635 73154656 -12541098 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7959 167 92 81 chr15 73154656 73156012 -12539742 - L1MC3 LINE L1 -881 6904 5406 526 311 37 52 chr15 73156038 73156476 -12539278 - L1ME4a LINE L1 -241 5923 5497 1488 228 3 28 chr15 73156476 73156796 -12538958 - AluJo SINE Alu 0 312 1 526 311 37 52 chr15 73156796 73157033 -12538721 - L1ME4a LINE L1 -667 5497 5258 258 328 83 13 chr15 73157063 73157325 -12538429 - L1ME4a LINE L1 -987 5159 4884 21 0 0 0 chr15 73157426 73157447 -12538307 + AT_rich Low_complexity Low_complexity 1 21 0 230 306 107 25 chr15 73158790 73158911 -12536843 - MIR SINE MIR -11 251 121 297 263 33 99 chr15 73159261 73159413 -12536341 - MIR3 SINE MIR -48 160 19 881 258 22 27 chr15 73159722 73159947 -12535807 + MER58A DNA MER1_type 1 224 0 785 291 20 12 chr15 73160018 73160262 -12535492 + MIR SINE MIR 5 250 -12 21 0 0 0 chr15 73160771 73160792 -12534962 + AT_rich Low_complexity Low_complexity 1 21 0 2122 84 42 3 chr15 73160905 73161191 -12534563 - AluSc SINE Alu -12 297 1 581 229 21 14 chr15 73161191 73161335 -12534419 - MIR SINE MIR -47 215 71 246 284 90 22 chr15 73162004 73162138 -12533616 - MIR SINE MIR -33 229 87 839 278 100 22 chr15 73163840 73164211 -12531543 - MLT1I LTR MaLR -4 405 6 312 255 167 36 chr15 73164547 73164739 -12531015 - L1M4 LINE L1 -3217 2929 2713 502 287 93 56 chr15 73164747 73165123 -12530631 - L1M4 LINE L1 -2752 3394 3005 2006 153 20 55 chr15 73165604 73165774 -12529980 + L1PB4 LINE L1 5767 5941 -215 2627 58 0 3 chr15 73165774 73166086 -12529668 + AluY SINE Alu 1 311 0 2006 153 20 55 chr15 73166086 73166319 -12529435 + L1PB4 LINE L1 5941 6156 0 31 0 0 0 chr15 73166353 73166384 -12529370 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 39 57 chr15 73166406 73166794 -12528960 - L1M4 LINE L1 -3619 2527 2147 2360 98 3 0 chr15 73167286 73167593 -12528161 - AluSc SINE Alu -1 308 1 216 0 0 0 chr15 73167932 73167956 -12527798 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 338 194 87 48 chr15 73168171 73168274 -12527480 - L1ME2 LINE L1 -49 6115 6009 828 174 116 7 chr15 73168276 73168431 -12527323 - MER20 DNA MER1_type -47 172 1 2087 193 67 3 chr15 73168431 73169048 -12526706 - L1ME3 LINE L1 -129 6033 5359 410 138 67 18 chr15 73169029 73169149 -12526605 + L1ME3 LINE L1 5225 5359 -805 * 702 194 79 29 chr15 73169231 73169474 -12526280 - MIR SINE MIR -21 241 9 253 91 0 0 chr15 73169996 73170029 -12525725 + THE1A LTR MaLR 1 33 -322 10337 62 10 0 chr15 73170032 73172142 -12523612 - L1PA6 LINE L1 0 6154 4036 2248 116 48 3 chr15 73172142 73172479 -12523275 + THE1A LTR MaLR 4 355 0 11740 81 14 21 chr15 73172479 73174069 -12521685 + THE1A-int LTR MaLR 1 1580 0 2696 93 3 0 chr15 73174069 73174423 -12521331 + THE1A LTR MaLR 1 355 0 261 224 0 0 chr15 73174698 73174747 -12521007 - L2 LINE L2 -5 3267 3219 2278 114 0 0 chr15 73175610 73175907 -12519847 + AluSx SINE Alu 1 297 -15 282 56 0 0 chr15 73176730 73176766 -12518988 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1644 122 0 4 chr15 73176766 73176995 -12518759 - AluSx SINE Alu -33 279 52 593 263 0 0 chr15 73177291 73177428 -12518326 + MIR SINE MIR 20 156 -106 329 305 179 13 chr15 73177438 73177497 -12518257 - MER5A DNA MER1_type -2 187 139 2290 95 0 3 chr15 73177497 73177792 -12517962 + AluSq SINE Alu 2 295 -18 329 305 179 13 chr15 73177792 73177883 -12517871 - MER5A DNA MER1_type -50 139 12 202 262 36 24 chr15 73177902 73177986 -12517768 + MIR SINE MIR 170 254 -8 198 103 0 0 chr15 73178575 73178604 -12517150 + (A)n Simple_repeat Simple_repeat 1 29 0 2243 76 3 33 chr15 73178999 73179300 -12516454 - AluSg1 SINE Alu -17 292 1 188 167 0 0 chr15 73179451 73179487 -12516267 + L2 LINE L2 3264 3299 -14 228 111 0 0 chr15 73179488 73179524 -12516230 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1820 169 16 90 chr15 73179640 73180085 -12515669 - MER101B LTR ERV1 -136 434 23 499 209 0 0 chr15 73180608 73180699 -12515055 - MER101 LTR ERV1 -157 317 227 253 259 0 0 chr15 73181142 73181196 -12514558 - L2 LINE L2 -86 3186 3133 273 258 15 53 chr15 73181833 73181965 -12513789 - MIR3 SINE MIR -32 176 50 201 62 0 0 chr15 73182344 73182376 -12513378 - MIR SINE MIR -123 139 108 3997 162 26 40 chr15 73182877 73183673 -12512081 - LTR1 LTR ERV1 0 785 1 556 240 0 16 chr15 73185758 73185887 -12509867 - L1PB4 LINE L1 -7 6149 6023 246 260 181 24 chr15 73186105 73186232 -12509522 + L2 LINE L2 3121 3267 -5 2067 117 52 43 chr15 73187727 73188096 -12507658 + THE1C LTR MaLR 4 375 0 180 111 0 0 chr15 73188173 73188200 -12507554 + (CA)n Simple_repeat Simple_repeat 1 27 0 315 0 0 0 chr15 73188606 73188641 -12507113 + (CA)n Simple_repeat Simple_repeat 1 35 0 517 50 0 0 chr15 73189304 73189364 -12506390 - 5S rRNA rRNA -29 92 33 367 279 143 82 chr15 73190850 73191227 -12504527 + L2 LINE L2 2873 3272 0 225 108 0 0 chr15 73192478 73192515 -12503239 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 291 227 52 52 chr15 73192516 73192613 -12503141 - L2 LINE L2 -16 3256 3160 302 310 63 74 chr15 73192655 73192926 -12502828 - L2 LINE L2 -424 2890 2623 2112 103 0 44 chr15 73193693 73194012 -12501742 + AluSq SINE Alu 1 305 -8 405 230 54 47 chr15 73194108 73194256 -12501498 + MIR SINE MIR 93 241 -21 227 405 0 8 chr15 73194504 73194625 -12501129 - L2 LINE L2 -17 3255 3136 269 282 34 51 chr15 73194833 73194950 -12500804 + MIR SINE MIR 77 191 -71 1390 129 15 0 chr15 73195134 73195336 -12500418 - MER4B LTR ERV1 0 610 406 184 313 16 0 chr15 73195384 73195448 -12500306 - L2 LINE L2 -214 3058 2994 257 253 33 44 chr15 73196928 73197019 -12498735 + L1M4 LINE L1 4531 4620 -1526 373 298 94 50 chr15 73197889 73198208 -12497546 - L2 LINE L2 -41 3272 2940 252 242 145 8 chr15 73198208 73198332 -12497422 - MER97a DNA MER1_type? 0 894 754 2551 58 3 6 chr15 73199009 73199321 -12496433 - AluY SINE Alu 0 311 1 21 0 0 0 chr15 73200303 73200324 -12495430 + AT_rich Low_complexity Low_complexity 1 21 0 7855 23 0 0 chr15 73200324 73201518 -12494236 - L1PA2 LINE L1 -1 6154 4961 292 210 171 54 chr15 73201780 73201985 -12493769 - MER97a DNA MER1_type? -123 771 543 841 136 51 25 chr15 73201985 73202254 -12493500 - MLT1A1 LTR MaLR -11 363 1 836 184 19 97 chr15 73202254 73202460 -12493294 - MER97b DNA MER1_type? -499 554 365 202 231 0 0 chr15 73202481 73202520 -12493234 + (TG)n Simple_repeat Simple_repeat 2 40 0 2247 97 3 19 chr15 73203108 73203418 -12492336 - AluSx SINE Alu -7 305 1 2292 117 30 38 chr15 73205705 73206072 -12489682 - THE1B LTR MaLR 0 364 1 915 178 67 143 chr15 73206113 73206484 -12489270 + MLT1A1 LTR MaLR 23 365 0 2229 119 0 10 chr15 73206695 73207005 -12488749 - AluSx SINE Alu -5 307 1 405 0 0 0 chr15 73207076 73207121 -12488633 + (TG)n Simple_repeat Simple_repeat 1 45 0 353 312 116 50 chr15 73208601 73209246 -12486508 + L1MEd LINE L1 4 723 -5396 222 91 0 0 chr15 73209246 73209279 -12486475 + (CA)n Simple_repeat Simple_repeat 2 34 0 353 312 116 50 chr15 73209279 73209501 -12486253 + L1MEd LINE L1 723 929 -5190 646 328 35 11 chr15 73209530 73209814 -12485940 + L1MD3 LINE L1 37 327 -6069 3727 143 38 3 chr15 73209823 73210402 -12485352 + MER6A DNA MER2_type 2 600 -5 2089 265 37 36 chr15 73210413 73211227 -12484527 + L1MD3 LINE L1 346 1160 -5236 7436 236 77 31 chr15 73211326 73212476 -12483278 + L1MD3 LINE L1 1859 2955 -3448 2270 176 5 0 chr15 73212476 73212862 -12482892 + MLT1B LTR MaLR 1 388 -2 7436 236 77 31 chr15 73212862 73215923 -12479831 + L1MD3 LINE L1 2955 6401 -2 230 225 123 43 chr15 73215914 73216052 -12479702 + L1MEd LINE L1 943 1091 -5028 * 429 281 92 57 chr15 73216136 73216334 -12479420 + L1MEd LINE L1 1167 1357 -4953 1622 152 61 11 chr15 73216334 73216611 -12479143 + AluJo SINE Alu 11 301 -11 429 281 92 57 chr15 73216611 73216669 -12479085 + L1MEd LINE L1 1357 1411 -4899 1948 109 28 0 chr15 73216669 73216953 -12478801 - L1PA11 LINE L1 -3 6171 5880 429 281 92 57 chr15 73216953 73217208 -12478546 + L1MEd LINE L1 1411 1697 -4613 2621 59 0 0 chr15 73217229 73217533 -12478221 + AluY SINE Alu 1 304 -7 536 290 126 8 chr15 73217644 73217906 -12477848 + L1ME3A LINE L1 5654 5946 -224 1962 183 193 0 chr15 73218588 73219019 -12476735 - MLT2B1 LTR ERVL -6 514 1 29 0 0 0 chr15 73219137 73219166 -12476588 + AT_rich Low_complexity Low_complexity 1 29 0 1455 183 81 12 chr15 73219197 73219519 -12476235 + MER2 DNA MER2_type 1 344 0 264 355 6 35 chr15 73220605 73220774 -12474980 - L1M4 LINE L1 -1949 4197 4034 325 278 244 10 chr15 73220869 73221078 -12474676 - MIR SINE MIR -3 259 2 461 234 10 93 chr15 73221164 73221369 -12474385 - L1M4 LINE L1 -2196 3950 3763 223 160 0 60 chr15 73222831 73222881 -12472873 + MIR SINE MIR 122 168 -94 270 179 0 0 chr15 73222894 73222950 -12472804 + (TATG)n Simple_repeat Simple_repeat 4 59 0 241 163 0 0 chr15 73222952 73222995 -12472759 + L1MC4 LINE L1 6658 6700 -1342 318 213 0 13 chr15 73223230 73223305 -12472449 - L1MCa LINE L1 -4358 2068 1995 1920 154 34 0 chr15 73223344 73223642 -12472112 - AluJb SINE Alu -4 308 1 245 292 0 0 chr15 73224396 73224461 -12471293 + G-rich Low_complexity Low_complexity 6 70 0 2492 64 0 7 chr15 73224599 73224896 -12470858 - AluSc SINE Alu -14 295 1 432 317 18 12 chr15 73225464 73225628 -12470126 - MIR SINE MIR -14 248 84 931 200 50 59 chr15 73226764 73226984 -12468770 - MER20 DNA MER1_type 0 219 2 2552 53 3 0 chr15 73227016 73227317 -12468437 - AluY SINE Alu -9 302 1 311 328 25 0 chr15 73227317 73227439 -12468315 + MIR SINE MIR 57 181 -81 357 306 28 14 chr15 73228615 73228759 -12466995 + MIR SINE MIR 82 227 -35 1351 89 0 0 chr15 73229476 73229644 -12466110 - AluSc SINE Alu -9 300 133 2145 107 20 3 chr15 73229645 73229945 -12465809 - AluSp SINE Alu -8 305 1 873 157 0 93 chr15 73231092 73231296 -12464458 + MER53 DNA DNA 5 189 0 806 183 21 70 chr15 73232393 73232470 -12463284 - MER45A DNA AcHobo -1404 177 98 2450 67 0 10 chr15 73232470 73232770 -12462984 + AluY SINE Alu 1 297 -14 806 183 21 70 chr15 73232770 73232878 -12462876 - MER45A DNA AcHobo -1483 98 1 2265 94 0 19 chr15 73233423 73233732 -12462022 - AluY SINE Alu -8 303 1 1824 151 189 15 chr15 73233975 73234372 -12461382 - MLT2B1 LTR ERVL -51 469 4 186 314 73 66 chr15 73234403 73234540 -12461214 - MER5A DNA MER1_type -15 174 37 268 304 0 0 chr15 73234765 73234834 -12460920 - MIR SINE MIR -106 102 34 379 285 134 12 chr15 73235925 73236097 -12459657 - MIR SINE MIR -1 261 69 1512 177 52 87 chr15 73236566 73236967 -12458787 - MLT1F1 LTR MaLR -4 563 177 207 0 0 0 chr15 73236984 73237007 -12458747 + (GA)n Simple_repeat Simple_repeat 1 23 0 393 254 148 6 chr15 73237007 73237176 -12458578 - MLT1F1 LTR MaLR -355 212 20 1358 163 117 72 chr15 73237180 73237609 -12458145 - LTR7 LTR ERV1 -2 448 1 3397 110 8 17 chr15 73237609 73238126 -12457628 - HERVH LTR ERV1 0 7713 7202 259 75 0 38 chr15 73238358 73238411 -12457343 + (TA)n Simple_repeat Simple_repeat 1 51 0 382 106 0 91 chr15 73238420 73238486 -12457268 - HERVH LTR ERV1 -497 7216 7157 326 331 110 8 chr15 73238603 73238848 -12456906 - L1ME LINE L1 -305 5816 5547 4348 116 17 8 chr15 73239157 73239795 -12455959 + LTR9B LTR ERV1 1 644 0 744 151 110 0 chr15 73239970 73240116 -12455638 - L1MB8 LINE L1 -5 6173 6012 213 189 0 0 chr15 73240183 73240231 -12455523 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2182 80 3 40 chr15 73240231 73240530 -12455224 - AluSx SINE Alu -24 288 1 243 215 38 25 chr15 73240939 73241018 -12454736 - AluS SINE Alu -1 299 220 1206 216 41 0 chr15 73341684 73341953 -12353801 - L1MA9 LINE L1 -198 6114 5835 698 171 149 22 chr15 73341951 73341989 -12353765 + L1MA9 LINE L1 6109 6141 -171 * 180 0 0 0 chr15 73341989 73342009 -12353745 + (CA)n Simple_repeat Simple_repeat 2 21 0 698 171 149 22 chr15 73342009 73342151 -12353603 + L1MA9 LINE L1 6141 6312 0 366 270 47 20 chr15 73343776 73343924 -12351830 + L1ME LINE L1 5544 5695 -426 245 322 9 26 chr15 73344018 73344133 -12351621 - L1ME LINE L1 -478 5643 5531 1963 103 0 7 chr15 73344329 73344630 -12351124 + AluY SINE Alu 26 311 0 351 0 0 0 chr15 73344730 73344769 -12350985 + (CA)n Simple_repeat Simple_repeat 1 39 0 234 368 80 0 chr15 73347669 73347794 -12347960 - L2 LINE L2 -5 3267 3133 243 259 0 0 chr15 73347956 73348014 -12347740 - MER69 DNA AcHobo -2468 58 1 41017 50 2 62 chr15 73348948 73355354 -12340400 + L1PA4 LINE L1 1 6008 -147 988 71 0 14 chr15 73355454 73355595 -12340159 + L1PA4 LINE L1 6017 6155 0 2090 122 3 0 chr15 73355604 73355890 -12339864 + AluY SINE Alu 1 287 -24 186 267 0 81 chr15 73357977 73358063 -12337691 + MIR3 SINE MIR 4 82 -126 296 259 211 20 chr15 73358581 73358728 -12337026 - MIR SINE MIR -16 246 72 284 284 95 20 chr15 73359071 73359192 -12336562 + MIR SINE MIR 20 149 -63 206 240 53 67 chr15 73359280 73359355 -12336399 - L2 LINE L2 -2038 1276 1203 410 276 211 0 chr15 73360095 73360280 -12335474 - MIR SINE MIR -11 251 28 2332 75 10 0 chr15 73361303 73361596 -12334158 + AluSc SINE Alu 5 300 -9 882 192 0 0 chr15 73361954 73362126 -12333628 - L1MA6 LINE L1 -12 6288 6117 21 0 0 0 chr15 73362530 73362551 -12333203 + AT_rich Low_complexity Low_complexity 1 21 0 1126 137 105 0 chr15 73362569 73362788 -12332966 - L1MA7 LINE L1 -22 6269 6028 298 233 151 0 chr15 73363547 73363620 -12332134 - MER63 DNA MER1_type 0 1061 978 337 256 0 0 chr15 73363623 73363701 -12332053 - MER63 DNA MER1_type -313 749 672 251 370 16 8 chr15 73363979 73364106 -12331648 + L2 LINE L2 3145 3272 0 2123 102 26 16 chr15 73364228 73364533 -12331221 + AluSq SINE Alu 1 308 -5 2187 111 0 0 chr15 73365032 73365353 -12330401 + AluSx SINE Alu 1 321 0 1271 129 0 0 chr15 73365354 73365532 -12330222 + AluSg/x SINE Alu 135 312 0 467 279 27 14 chr15 73365543 73365690 -12330064 + MIR SINE MIR 40 188 -74 25 65 0 0 chr15 73365705 73365751 -12330003 + AT_rich Low_complexity Low_complexity 1 46 0 2846 127 4 53 chr15 73365801 73365984 -12329770 - Tigger2a DNA MER2_type -2274 434 244 2277 106 0 0 chr15 73365984 73366276 -12329478 - AluSx SINE Alu -20 292 1 2846 127 4 53 chr15 73366276 73366548 -12329206 - Tigger2a DNA MER2_type -2464 244 1 222 273 65 13 chr15 73366577 73366654 -12329100 - MIR3 SINE MIR -11 197 117 259 179 32 53 chr15 73366689 73366784 -12328970 + T-rich Low_complexity Low_complexity 3 95 0 257 277 12 36 chr15 73367118 73367201 -12328553 - MIR SINE MIR -67 141 61 212 0 0 35 chr15 73368813 73368842 -12326912 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 1001 198 113 91 chr15 73369557 73369910 -12325844 + MLT1A1 LTR MaLR 5 365 0 390 313 16 62 chr15 73369950 73370321 -12325433 + L1PA15 LINE L1 2 355 -7226 14869 201 19 22 chr15 73371278 73376543 -12319211 + L1PA15 LINE L1 2321 7579 -24 297 272 43 11 chr15 73376619 73376711 -12319043 - MER5B DNA MER1_type -83 95 1 296 342 68 0 chr15 73376752 73376869 -12318885 - L2 LINE L2 -1 3271 3147 2241 112 0 3 chr15 73378850 73379153 -12316601 - AluSg SINE Alu -8 302 1 1065 239 20 75 chr15 73379224 73379675 -12316079 - L1ME2 LINE L1 0 6164 5739 2027 74 0 8 chr15 73380263 73380519 -12315235 - AluSc SINE Alu -20 289 36 201 74 0 0 chr15 73381221 73381248 -12314506 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 828 215 11 6 chr15 73383117 73383294 -12312460 - MER5B DNA MER1_type 0 178 1 329 188 14 0 chr15 73383414 73383483 -12312271 - MER81 DNA DNA -1 113 44 635 195 0 65 chr15 73384046 73384215 -12311539 - MER106A DNA MER1_type -76 160 3 1792 166 3 0 chr15 73384614 73384904 -12310850 + AluSx SINE Alu 7 297 -15 393 243 74 74 chr15 73385259 73385448 -12310306 - MLT1D LTR MaLR -316 189 1 710 178 18 24 chr15 73385554 73385723 -12310031 - LTR32 LTR ERVL -2 469 302 1665 176 29 0 chr15 73385816 73386129 -12309625 - LTR32 LTR ERVL -135 336 15 351 298 10 0 chr15 73386237 73386341 -12309413 - LTR33 LTR ERVL 0 521 417 427 161 40 13 chr15 73386562 73386711 -12309043 + CT-rich Low_complexity Low_complexity 1 153 0 202 370 19 9 chr15 73387005 73387113 -12308641 + L2 LINE L2 3204 3312 -1 345 362 42 61 chr15 73387482 73387860 -12307894 - L2 LINE L2 -5 3267 2897 1264 206 70 19 chr15 73387881 73388196 -12307558 - MLT1A1 LTR MaLR -32 333 3 2303 96 0 3 chr15 73389023 73389326 -12306428 + AluSg SINE Alu 1 302 -8 635 332 79 18 chr15 73389716 73390096 -12305658 + L1M4 LINE L1 2220 2622 -3524 206 229 21 0 chr15 73390105 73390153 -12305601 + (TG)n Simple_repeat Simple_repeat 2 50 0 200 164 41 14 chr15 73390170 73390243 -12305511 + (TA)n Simple_repeat Simple_repeat 1 75 0 454 248 110 51 chr15 73390307 73390561 -12305193 + L1M4 LINE L1 2656 2924 -3222 2032 135 0 43 chr15 73390839 73391165 -12304589 + AluSx SINE Alu 1 312 0 259 289 24 0 chr15 73392109 73392192 -12303562 - MLT1L LTR MaLR -383 232 148 4873 137 23 50 chr15 73392687 73393270 -12302484 - MER4D LTR ERV1 0 903 353 2140 126 3 3 chr15 73393270 73393580 -12302174 + AluSg SINE Alu 1 310 0 4873 137 23 50 chr15 73393580 73393924 -12301830 - MER4D LTR ERV1 -550 353 1 1996 177 41 26 chr15 73394991 73395537 -12300217 - MLT2A2 LTR ERVL 0 554 1 189 306 97 32 chr15 73395544 73395668 -12300086 + MIR SINE MIR 125 256 -6 2279 230 109 19 chr15 73396368 73397237 -12298517 - L1MCb LINE L1 -2924 3640 2684 243 0 0 0 chr15 73397237 73397264 -12298490 + (TC)n Simple_repeat Simple_repeat 2 28 0 2279 230 109 19 chr15 73397264 73397299 -12298455 - L1MCb LINE L1 -3880 2684 2654 1313 172 4 13 chr15 73397299 73397313 -12298441 - AluSg/x SINE Alu -1 309 296 2465 90 0 0 chr15 73397313 73397624 -12298130 - AluY SINE Alu 0 311 1 1313 172 4 13 chr15 73397624 73397836 -12297918 - AluSg/x SINE Alu -14 296 85 2130 234 77 42 chr15 73397876 73397991 -12297763 - L1MCb LINE L1 -4007 2557 2448 1787 198 0 3 chr15 73397991 73398279 -12297475 - AluJo SINE Alu -20 292 6 2130 234 77 42 chr15 73398279 73399965 -12295789 - L1MCb LINE L1 -4116 2448 607 23 0 0 0 chr15 73399990 73400013 -12295741 + AT_rich Low_complexity Low_complexity 1 23 0 373 317 149 34 chr15 73400019 73400435 -12295319 + L1MC4a LINE L1 5872 6335 -1473 467 259 106 42 chr15 73400514 73400942 -12294812 + L1MC4 LINE L1 6414 6831 -977 * 1445 248 47 3 chr15 73400934 73401321 -12294433 + L1MDb LINE L1 135 538 -6005 * 1836 165 22 14 chr15 73401299 73401668 -12294086 + L1MDb LINE L1 834 1205 -5338 1108 209 162 12 chr15 73401661 73402092 -12293662 + L1MDb LINE L1 2126 2621 -3919 * 321 280 56 56 chr15 73402093 73402287 -12293467 + L1MC5 LINE L1 7518 7714 -247 2299 88 0 26 chr15 73402287 73402593 -12293161 + AluSx SINE Alu 3 300 -12 321 280 56 56 chr15 73402593 73402666 -12293088 + L1MC5 LINE L1 7713 7785 -176 349 227 11 0 chr15 73402692 73402780 -12292974 + L1P3 LINE L1 13 101 -5774 399 268 0 9 chr15 73402827 73402939 -12292815 + L1P3 LINE L1 632 742 -5133 5761 91 16 8 chr15 73402941 73403818 -12291936 + L1PA10 LINE L1 5260 6143 -25 1306 119 0 0 chr15 73403818 73403995 -12291759 + AluSg/x SINE Alu 136 312 0 519 165 8 16 chr15 73403995 73404116 -12291638 + GA-rich Low_complexity Low_complexity 4 123 0 23 33 0 0 chr15 73404933 73404963 -12290791 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr15 73405655 73405685 -12290069 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 440 352 85 45 chr15 73405698 73406169 -12289585 - L2 LINE L2 -20 3293 2804 790 296 131 47 chr15 73406267 73406910 -12288844 - L2 LINE L2 -711 2603 1907 187 298 80 32 chr15 73406959 73407147 -12288607 + L2 LINE L2 1689 1885 -1429 1274 147 63 92 chr15 73407186 73407240 -12288514 + THE1C LTR MaLR 1 55 -320 2042 123 60 0 chr15 73407240 73407524 -12288230 + AluSx SINE Alu 1 301 -11 1274 147 63 92 chr15 73407524 73407817 -12287937 + THE1C LTR MaLR 55 338 -37 4613 104 25 12 chr15 73407835 73408568 -12287186 - L1PB1 LINE L1 -3 6148 5407 22 35 0 0 chr15 73408609 73408638 -12287116 + AT_rich Low_complexity Low_complexity 1 29 0 320 353 46 6 chr15 73408700 73408873 -12286881 - L1M4 LINE L1 -1105 5041 4862 282 73 0 0 chr15 73409124 73409165 -12286589 + (CA)n Simple_repeat Simple_repeat 1 41 0 1949 154 0 0 chr15 73409647 73409939 -12285815 + AluSx SINE Alu 1 292 -20 1281 282 59 28 chr15 73410421 73411186 -12284568 + L2 LINE L2 2526 3313 0 196 296 112 10 chr15 73411989 73412087 -12283667 - MIR SINE MIR -72 190 83 23 33 0 0 chr15 73412499 73412529 -12283225 + AT_rich Low_complexity Low_complexity 1 30 0 330 325 16 24 chr15 73412977 73413103 -12282651 + MIR SINE MIR 66 190 -72 409 281 39 35 chr15 73475757 73475989 -12219765 - L1MC4a LINE L1 -1886 5922 5686 245 292 67 34 chr15 73476654 73476832 -12218922 + L1ME LINE L1 404 587 -5618 2400 134 25 45 chr15 73477165 73477606 -12218148 - MSTB1 LTR MaLR 0 432 1 422 315 43 37 chr15 73477698 73478059 -12217695 + L1M3c LINE L1 1038 1663 -4694 2176 262 31 29 chr15 73478068 73478651 -12217103 + L1ME LINE L1 1645 2225 -3990 2041 73 0 0 chr15 73478651 73478941 -12216813 - AluY SINE Alu 0 325 36 2403 68 0 3 chr15 73478946 73479242 -12216512 - AluY SINE Alu -16 295 1 2176 262 31 29 chr15 73479242 73479649 -12216105 + L1ME LINE L1 2228 2602 -3613 293 62 21 0 chr15 73479653 73479701 -12216053 + (TC)n Simple_repeat Simple_repeat 2 50 0 354 283 7 13 chr15 73479705 73479857 -12215897 + L1MCa LINE L1 1058 1208 -5218 231 88 0 0 chr15 73479857 73479891 -12215863 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 3729 248 83 24 chr15 73479916 73482541 -12213213 + L1MCa LINE L1 1366 4121 -2305 888 324 46 15 chr15 73482546 73483021 -12212733 - HERVL LTR ERVL -1526 4128 3639 568 229 41 23 chr15 73483056 73483322 -12212432 + L1ME1 LINE L1 2167 2437 -3959 601 321 45 75 chr15 73483323 73483722 -12212032 + L2 LINE L2 2919 3305 -8 735 267 38 10 chr15 73483761 73484049 -12211705 + L1ME1 LINE L1 2384 2679 -3536 2047 247 47 42 chr15 73484084 73484233 -12211521 + L1ME1 LINE L1 5488 5635 -600 1886 141 31 60 chr15 73484233 73484617 -12211137 + THE1C LTR MaLR 1 373 -2 2047 247 47 42 chr15 73484617 73485211 -12210543 + L1ME1 LINE L1 5635 6235 0 885 281 16 7 chr15 73485223 73485533 -12210221 + L1ME3A LINE L1 5750 6062 -108 1301 231 64 11 chr15 73485564 73485937 -12209817 + L1ME1 LINE L1 5482 5874 -292 665 218 82 12 chr15 73485938 73486108 -12209646 - MER20 DNA MER1_type -1 218 37 680 254 40 27 chr15 73486115 73486339 -12209415 + L1ME1 LINE L1 5862 6088 -78 208 258 65 108 chr15 73487640 73487733 -12208021 + MER91C DNA MER1_type 21 109 -31 323 377 87 0 chr15 73488123 73488261 -12207493 + L1PB4 LINE L1 669 818 -6032 4914 235 54 39 chr15 73488267 73488383 -12207371 + L1PB4 LINE L1 1563 1676 -5173 2275 125 0 0 chr15 73488383 73488694 -12207060 + AluSx SINE Alu 1 311 -1 4914 235 54 39 chr15 73488694 73491103 -12204651 + L1PB4 LINE L1 1676 4147 -2702 * 5630 181 33 21 chr15 73491098 73491531 -12204223 + L1PB4 LINE L1 4664 5090 -1769 279 0 0 0 chr15 73491531 73491562 -12204192 + (CA)n Simple_repeat Simple_repeat 1 31 0 5630 181 33 21 chr15 73491562 73492844 -12202910 + L1PB4 LINE L1 5090 6391 -468 1994 69 3 105 chr15 73492844 73493176 -12202578 + AluSp SINE Alu 1 298 -5 5630 181 33 21 chr15 73493176 73493527 -12202227 + L1PB4 LINE L1 6391 6736 -123 1109 107 0 0 chr15 73493528 73493677 -12202077 + AluSg/x SINE Alu 137 285 -27 581 203 31 0 chr15 73493677 73493805 -12201949 + L1PB4 LINE L1 6727 6858 -1 2113 112 48 0 chr15 73493948 73494243 -12201511 + AluSx SINE Alu 3 311 -1 188 309 82 10 chr15 73494347 73494444 -12201310 - L3 LINE CR1 -391 1186 1083 849 242 0 11 chr15 73494904 73495094 -12200660 - MER5A DNA MER1_type 0 189 2 180 174 65 43 chr15 73495332 73495378 -12200376 - L2 LINE L2 -10 3303 3257 726 269 25 5 chr15 73496991 73497188 -12198566 + MIR SINE MIR 3 203 -59 180 269 221 10 chr15 73497258 73497362 -12198392 - MIR3 SINE MIR -1 207 82 2872 173 76 48 chr15 73497515 73498222 -12197532 - LTR8A LTR ERV1 0 727 1 185 347 82 0 chr15 73498478 73498576 -12197178 - L2 LINE L2 -1313 2001 1896 4109 122 13 8 chr15 73498614 73499245 -12196509 + MER41B LTR ERV1 2 635 0 188 257 190 39 chr15 73499245 73499415 -12196339 + L2 LINE L2 1867 2067 -1247 3148 171 84 22 chr15 73499417 73499599 -12196155 - Tigger1 DNA MER2_type -1743 675 506 2501 99 8 0 chr15 73499599 73499963 -12195791 + L1PA10 LINE L1 5793 6159 -9 3148 171 84 22 chr15 73499963 73500401 -12195353 - Tigger1 DNA MER2_type -1912 506 17 220 313 175 33 chr15 73500436 73500676 -12195078 + L2 LINE L2 2703 2976 -338 2341 142 32 41 chr15 73500726 73501162 -12194592 - Tigger2a DNA MER2_type 0 434 3 338 272 43 53 chr15 73501434 73501611 -12194143 + MER5A DNA MER1_type 19 177 -1 366 290 116 31 chr15 73502380 73502604 -12193150 - Charlie8 DNA MER1_type -2174 243 1 28 61 0 0 chr15 73503528 73503577 -12192177 + AT_rich Low_complexity Low_complexity 1 49 0 3066 20 0 0 chr15 73503607 73503963 -12191791 - L1PA3 LINE L1 0 6155 5800 320 332 142 21 chr15 73504006 73504337 -12191417 - L1 LINE L1 -2220 3926 3556 356 224 26 167 chr15 73504432 73504624 -12191130 + MER5B DNA MER1_type 8 172 -6 1559 161 62 34 chr15 73504813 73505105 -12190649 + AluJo SINE Alu 1 300 -12 387 309 92 20 chr15 73505106 73505355 -12190399 - L1 LINE L1 -2938 3208 2942 2046 114 33 7 chr15 73505917 73506216 -12189538 - AluSx SINE Alu -5 307 1 5001 177 42 6 chr15 73506222 73508094 -12187660 - L1PB4 LINE L1 -1 6155 4219 * 5845 201 14 11 chr15 73508092 73509415 -12186339 + L1PB4 LINE L1 2905 4231 -1915 21 57 0 0 chr15 73509531 73509566 -12186188 + AT_rich Low_complexity Low_complexity 1 35 0 505 249 72 50 chr15 73509748 73509929 -12185825 + MIR SINE MIR 6 190 -72 298 333 33 27 chr15 73510241 73510391 -12185363 - MIR SINE MIR -55 207 57 580 278 30 56 chr15 73512016 73512250 -12183504 - L2 LINE L2 0 3272 3045 393 281 62 7 chr15 73513052 73513198 -12182556 + MIR SINE MIR 59 212 -50 247 310 172 0 chr15 73513214 73513330 -12182424 - MER91C DNA MER1_type -4 136 1 1957 113 0 32 chr15 73513676 73513959 -12181795 - AluSq SINE Alu -39 274 1 184 360 58 12 chr15 73514702 73514788 -12180966 - MIR3 SINE MIR -30 178 89 1988 212 29 13 chr15 73514802 73515255 -12180499 + LTR40b LTR ERVL 1 460 -2 353 256 33 0 chr15 73516661 73516751 -12179003 - L1MC4 LINE L1 -1337 6705 6613 315 127 0 0 chr15 73516752 73516815 -12178939 + (TA)n Simple_repeat Simple_repeat 2 64 0 231 36 0 0 chr15 73516815 73516843 -12178911 + (CA)n Simple_repeat Simple_repeat 2 29 0 2674 86 11 6 chr15 73517360 73517722 -12178032 - THE1B LTR MaLR 0 364 1 303 122 0 0 chr15 73517762 73517811 -12177943 + (CA)n Simple_repeat Simple_repeat 2 50 0 1102 99 6 6 chr15 73518602 73518774 -12176980 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 261 0 0 0 chr15 73518773 73518802 -12176952 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 * 279 214 29 14 chr15 73519966 73520036 -12175718 + MER103 DNA DNA 17 87 -79 2969 6 0 0 chr15 73520071 73520389 -12175365 - AluYb8 SINE Alu 0 318 1 313 317 29 0 chr15 73520527 73520631 -12175123 + MER96 DNA MER1_type? 69 175 0 620 170 9 27 chr15 73520837 73520949 -12174805 - MER70B LTR ERVL -15 563 454 1952 287 50 14 chr15 73521782 73522287 -12173467 - MLT1E LTR MaLR -64 529 7 453 255 18 91 chr15 73522294 73522527 -12173227 - L1M4 LINE L1 -5632 1227 862 360 258 144 41 chr15 73522710 73522938 -12172816 - L1M4 LINE L1 -6383 472 91 246 268 0 0 chr15 73523409 73523465 -12172289 + L2 LINE L2 2493 2548 -766 2541 169 19 16 chr15 73523545 73523978 -12171776 - Tigger2a DNA MER2_type 0 434 1 472 287 61 0 chr15 73524011 73524175 -12171579 + MIR SINE MIR 89 262 0 324 361 0 26 chr15 73524168 73524323 -12171431 + L2 LINE L2 2555 2705 -609 * 2242 105 0 3 chr15 73524330 73524625 -12171129 + AluSx SINE Alu 1 294 -18 812 242 35 10 chr15 73524659 73524857 -12170897 - MER63A DNA MER1_type -6 204 2 223 372 22 0 chr15 73524864 73525001 -12170753 + L2 LINE L2 2739 2878 -436 475 322 144 28 chr15 73525033 73525237 -12170517 + L2 LINE L2 2957 3213 -100 1661 192 0 7 chr15 73525237 73525534 -12170220 + AluJb SINE Alu 7 301 -11 475 322 144 28 chr15 73525534 73525649 -12170105 + L2 LINE L2 3213 3313 0 447 273 283 16 chr15 73525777 73525964 -12169790 - MIR SINE MIR -22 240 4 2021 90 50 4 chr15 73525996 73526274 -12169480 + AluSq SINE Alu 1 291 -22 250 299 237 10 chr15 73526698 73526795 -12168959 + MER5B DNA MER1_type 1 119 -59 5447 161 33 18 chr15 73527980 73529012 -12166742 + L1MA9 LINE L1 5266 6312 0 233 109 0 87 chr15 73529263 73529309 -12166445 - L1M2 LINE L1 -790 5510 5469 308 306 59 41 chr15 73529530 73529700 -12166054 + L1ME4a LINE L1 5713 5885 -236 465 319 51 28 chr15 73531613 73531867 -12163887 + MIR SINE MIR 3 262 0 202 329 0 14 chr15 73531919 73531992 -12163762 + MIR SINE MIR 58 129 -133 341 262 112 0 chr15 73532515 73532622 -12163132 + LTR16A LTR ERVL 326 444 -6 2307 105 7 0 chr15 73533940 73534245 -12161509 + AluSx SINE Alu 1 307 -5 2291 79 0 16 chr15 73534794 73535097 -12160657 + AluY SINE Alu 1 298 -13 375 286 57 34 chr15 73536013 73536188 -12159566 + MIR SINE MIR 71 249 -13 608 169 97 0 chr15 73537240 73537364 -12158390 + MER63A DNA MER1_type 73 208 -2 357 324 45 0 chr15 73537531 73537642 -12158112 - MER91C DNA MER1_type -24 116 1 312 27 0 0 chr15 73537679 73537716 -12158038 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 311 16 58 chr15 73539251 73539373 -12156381 + MIR SINE MIR 15 149 -67 649 240 8 0 chr15 73539483 73539612 -12156142 + MER5A DNA MER1_type 1 130 -59 384 281 73 17 chr15 73540356 73540534 -12155220 - MIR SINE MIR -12 250 63 658 63 0 0 chr15 73540817 73540896 -12154858 + MADE1 DNA Mariner 1 79 -1 3750 146 34 15 chr15 73541633 73542223 -12153531 + MER6A DNA MER2_type 1 601 -4 2961 136 21 2 chr15 73543206 73543626 -12152128 - MSTA LTR MaLR 0 428 1 340 336 0 0 chr15 73544213 73544347 -12151407 + (TG)n Simple_repeat Simple_repeat 1 134 0 409 329 6 0 chr15 73545773 73545943 -12149811 + (TG)n Simple_repeat Simple_repeat 1 171 0 220 293 0 0 chr15 73547010 73547068 -12148686 - L2 LINE L2 0 3272 3215 291 299 31 94 chr15 73547543 73547797 -12147957 + MIR SINE MIR 22 259 -3 25 31 0 0 chr15 73548712 73548744 -12147010 + AT_rich Low_complexity Low_complexity 1 32 0 306 294 16 87 chr15 73548959 73549085 -12146669 - MER5A DNA MER1_type -61 128 12 1464 111 0 58 chr15 73549314 73549540 -12146214 - AluSg/x SINE Alu -9 303 91 313 362 92 16 chr15 73549838 73550023 -12145731 + MIR SINE MIR 18 216 -46 456 266 158 25 chr15 73550028 73550231 -12145523 + MIR SINE MIR 32 261 -1 1947 193 38 53 chr15 73552963 73553415 -12142339 - MLT1D LTR MaLR -2 503 59 1791 186 16 91 chr15 73553422 73553906 -12141848 - MER101 LTR ERV1 -16 458 11 547 231 39 45 chr15 73553905 73554061 -12141693 - MLT1D LTR MaLR -344 161 7 * 28 0 0 0 chr15 73554427 73554455 -12141299 + GC_rich Low_complexity Low_complexity 1 28 0 366 240 91 52 chr15 73554471 73554625 -12141129 - MER69 DNA AcHobo -2348 178 19 571 287 96 62 chr15 73554965 73555408 -12140346 + MLT1J LTR MaLR 3 425 -25 266 263 128 117 chr15 73556138 73556496 -12139258 + L2 LINE L2 2030 2391 -923 526 270 167 71 chr15 73556496 73556903 -12138851 - MLT1J1 LTR MaLR 0 446 1 285 382 92 21 chr15 73557459 73557697 -12138057 + L2 LINE L2 2723 2977 -337 201 244 0 6 chr15 73557771 73557856 -12137898 + L2 LINE L2 3019 3146 -167 375 152 20 20 chr15 73557874 73557973 -12137781 + CT-rich Low_complexity Low_complexity 1 99 0 264 375 13 20 chr15 73557973 73558125 -12137629 + L2 LINE L2 3163 3313 0 247 304 0 0 chr15 73558593 73558649 -12137105 + MER58A DNA MER1_type 1 56 -168 2022 96 37 0 chr15 73558676 73558947 -12136807 - AluSc SINE Alu -18 291 11 753 238 36 0 chr15 73558953 73559121 -12136633 + MER58B DNA MER1_type 168 341 0 637 319 119 15 chr15 73559426 73559761 -12135993 + MLT1J LTR MaLR 18 387 -124 2362 150 78 10 chr15 73559796 73560196 -12135558 - MSTA LTR MaLR 0 428 2 231 341 22 15 chr15 73561004 73561139 -12134615 - MIR SINE MIR -94 168 33 2478 156 56 2 chr15 73561261 73561671 -12134083 - MSTB1 LTR MaLR 0 432 1 495 292 111 29 chr15 73561714 73561957 -12133797 + MLT1G1 LTR MaLR 208 470 -125 279 93 0 0 chr15 73561956 73561999 -12133755 + MADE1 DNA Mariner 38 80 0 * 1226 178 13 30 chr15 73563333 73563569 -12132185 + AluJo SINE Alu 70 301 -11 220 328 0 0 chr15 73563801 73563865 -12131889 - L2 LINE L2 -8 3305 3242 217 384 56 40 chr15 73565043 73565168 -12130586 + L2 LINE L2 3142 3268 -4 202 250 13 26 chr15 73565590 73565666 -12130088 + A-rich Low_complexity Low_complexity 2 76 0 576 231 18 59 chr15 73566212 73566433 -12129321 - L1MC5 LINE L1 -31 7930 7719 2079 148 8 41 chr15 73566651 73566922 -12128832 - MSTB1 LTR MaLR 0 432 175 2392 119 36 28 chr15 73566922 73567283 -12128471 - THE1B LTR MaLR 0 364 1 2079 148 8 41 chr15 73567283 73567375 -12128379 - MSTB1 LTR MaLR -257 175 81 1420 158 8 8 chr15 73567381 73567621 -12128133 - MSTB1-int LTR MaLR 0 1651 1412 * 2120 191 61 11 chr15 73567614 73568054 -12127700 - MSTB1-int LTR MaLR -1189 462 1 2933 145 7 11 chr15 73568054 73568488 -12127266 - MSTB1 LTR MaLR 0 432 1 231 257 14 27 chr15 73568580 73568654 -12127100 - L2 LINE L2 0 3313 3241 807 148 25 9 chr15 73569884 73570334 -12125420 + (TG)n Simple_repeat Simple_repeat 1 457 0 520 239 44 50 chr15 73571152 73571387 -12124367 + MIR SINE MIR 27 261 -1 2391 103 3 0 chr15 73571674 73571985 -12123769 - AluSp SINE Alu -1 312 1 291 28 0 0 chr15 73573350 73573386 -12122368 + (TG)n Simple_repeat Simple_repeat 1 36 0 402 71 0 0 chr15 73573386 73573437 -12122317 + (GA)n Simple_repeat Simple_repeat 2 52 0 3557 131 47 11 chr15 73574414 73575048 -12120706 - MER51D LTR ERV1 0 657 1 216 335 140 36 chr15 73575305 73575526 -12120228 - L2 LINE L2 -43 3270 3027 340 264 259 15 chr15 73575896 73576097 -12119657 - MIR SINE MIR -9 253 4 440 293 93 33 chr15 73576866 73577081 -12118673 - MIR SINE MIR -1 261 34 397 121 0 0 chr15 73577175 73577233 -12118521 - MER58A DNA MER1_type -13 94 37 559 232 34 11 chr15 73577278 73577455 -12118299 + MER63 DNA MER1_type 853 1033 -29 202 287 234 30 chr15 73577467 73577634 -12118120 + MIR SINE MIR 43 243 -19 217 402 93 0 chr15 73578164 73578271 -12117483 - L2 LINE L2 -37 3235 3119 261 323 56 111 chr15 73578442 73578820 -12116934 + L2 LINE L2 2916 3272 0 1996 122 0 18 chr15 73578929 73579245 -12116509 + AluSx SINE Alu 1 311 0 1101 219 144 26 chr15 73579954 73580339 -12115415 - MLT1G LTR MaLR -64 503 49 560 65 13 0 chr15 73580881 73580958 -12114796 + MADE1 DNA Mariner 3 80 0 1955 122 0 78 chr15 73581339 73581658 -12114096 - AluSg SINE Alu -16 294 1 714 57 0 0 chr15 73581679 73581767 -12113987 - AluSg/x SINE Alu -21 291 204 4460 135 8 45 chr15 73581767 73582152 -12113602 - L1PB3 LINE L1 -15 6139 5742 2231 86 45 0 chr15 73582152 73582444 -12113310 - AluY SINE Alu -2 309 5 4460 135 8 45 chr15 73582444 73582911 -12112843 - L1PB3 LINE L1 -412 5742 5318 363 314 42 0 chr15 73583350 73583468 -12112286 - MIR SINE MIR -64 198 76 319 322 79 65 chr15 73584039 73584253 -12111501 + MIR SINE MIR 39 255 -7 382 326 27 43 chr15 73585424 73585608 -12110146 - MIR SINE MIR -74 188 8 383 38 19 0 chr15 73585900 73585953 -12109801 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr15 73586290 73586318 -12109436 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 73586645 73586666 -12109088 + AT_rich Low_complexity Low_complexity 1 21 0 439 335 12 6 chr15 73586971 73587135 -12108619 + MIR SINE MIR 81 245 -17 28 48 0 0 chr15 73587341 73587383 -12108371 + AT_rich Low_complexity Low_complexity 1 42 0 482 0 17 0 chr15 73589841 73589899 -12105855 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 336 281 16 8 chr15 73590294 73590422 -12105332 + L1ME LINE L1 5525 5653 -468 21 0 0 0 chr15 73590459 73590480 -12105274 + AT_rich Low_complexity Low_complexity 1 21 0 272 293 8 8 chr15 73590636 73590759 -12104995 + (TA)n Simple_repeat Simple_repeat 1 123 0 284 306 8 16 chr15 73592113 73592234 -12103520 - MLT1K LTR MaLR -1 587 468 22 0 0 0 chr15 73592235 73592257 -12103497 + AT_rich Low_complexity Low_complexity 1 22 0 322 191 0 0 chr15 73592442 73592505 -12103249 - MLT1L LTR MaLR -415 200 138 346 168 0 20 chr15 73592619 73592720 -12103034 + (TA)n Simple_repeat Simple_repeat 2 100 0 182 43 43 43 chr15 73592758 73592804 -12102950 + (TA)n Simple_repeat Simple_repeat 1 46 0 205 183 49 37 chr15 73592805 73592887 -12102867 + (CTATA)n Simple_repeat Simple_repeat 4 86 0 * 266 164 63 38 chr15 73592844 73593003 -12102751 + (TA)n Simple_repeat Simple_repeat 1 163 0 281 108 0 31 chr15 73593005 73593070 -12102684 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 260 207 74 0 chr15 73593074 73593195 -12102559 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 393 144 44 50 chr15 73593302 73593482 -12102272 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 417 214 22 22 chr15 73593378 73593556 -12102198 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 325 122 67 18 chr15 73593568 73593732 -12102022 + (TA)n Simple_repeat Simple_repeat 1 172 0 339 224 29 23 chr15 73593755 73593994 -12101760 + (TATAA)n Simple_repeat Simple_repeat 1 240 0 285 273 154 45 chr15 73594016 73594126 -12101628 + L2 LINE L2 3189 3310 -3 2198 136 0 0 chr15 73594748 73595050 -12100704 - AluSx SINE Alu -10 302 1 2166 120 7 19 chr15 73595595 73595904 -12099850 - AluSq SINE Alu -8 305 1 300 170 0 0 chr15 73596103 73596150 -12099604 + MER63C DNA MER1_type 1 47 -883 1423 113 3 128 chr15 73596173 73596501 -12099253 + LTR12 LTR ERV1 1 287 -427 306 164 15 0 chr15 73596501 73596568 -12099186 + LTR30 LTR ERV1 557 624 -98 681 136 34 0 chr15 73596568 73596686 -12099068 + LTR12 LTR ERV1 359 480 -234 3045 211 60 10 chr15 73596691 73597506 -12098248 + MER63C DNA MER1_type 75 930 0 1831 90 63 37 chr15 73597621 73597920 -12097834 - AluSx SINE Alu -5 307 1 234 0 0 0 chr15 73599209 73599235 -12096519 + (TG)n Simple_repeat Simple_repeat 1 26 0 340 311 58 61 chr15 73601334 73601906 -12093848 - L1ME4a LINE L1 -205 5916 5347 238 203 0 72 chr15 73602919 73602988 -12092766 - L1ME4a LINE L1 -2001 4145 4082 2087 123 7 0 chr15 73603144 73603436 -12092318 - AluSx SINE Alu -5 307 14 33 0 0 0 chr15 73603580 73603613 -12092141 + AT_rich Low_complexity Low_complexity 1 33 0 2141 52 85 0 chr15 73604115 73604385 -12091369 - AluY SINE Alu -18 293 1 23 33 0 0 chr15 73604395 73604425 -12091329 + AT_rich Low_complexity Low_complexity 1 30 0 363 405 53 20 chr15 73604732 73605073 -12090681 + HAL1 LINE L1 171 522 -1985 203 184 0 0 chr15 73605117 73605155 -12090599 + A-rich Low_complexity Low_complexity 1 38 0 2212 106 0 0 chr15 73605324 73605631 -12090123 + AluSx SINE Alu 1 307 0 633 231 105 84 chr15 73605634 73606018 -12089736 - MER57A LTR ERV1 -21 407 12 871 219 72 44 chr15 73606138 73606458 -12089296 + HAL1 LINE L1 1259 1587 -920 4768 105 23 8 chr15 73606489 73607233 -12088521 + L1PA14 LINE L1 5398 6152 -9 320 291 56 11 chr15 73607241 73607420 -12088334 + HAL1 LINE L1 1607 1793 -714 2091 117 0 0 chr15 73607429 73607710 -12088044 + AluSc SINE Alu 1 281 -28 24 0 0 0 chr15 73607710 73607734 -12088020 + AT_rich Low_complexity Low_complexity 1 24 0 386 293 115 28 chr15 73607860 73608135 -12087619 + MLT1H1 LTR MaLR 40 298 -292 288 234 169 2 chr15 73608165 73608271 -12087483 + MLT1H1 LTR MaLR 429 538 -17 441 287 38 38 chr15 73608271 73608454 -12087300 + HAL1 LINE L1 1862 2047 -460 2348 90 3 0 chr15 73608454 73608764 -12086990 + AluSp SINE Alu 1 311 -2 441 287 38 38 chr15 73608764 73608869 -12086885 + HAL1 LINE L1 2046 2150 -357 2196 94 0 39 chr15 73609185 73609492 -12086262 - AluSq SINE Alu -18 295 1 2166 43 14 21 chr15 73609824 73610136 -12085618 + AluY SINE Alu 1 310 0 848 201 18 6 chr15 73610178 73610347 -12085407 - FAM SINE Alu -4 171 1 2301 93 3 3 chr15 73610840 73611142 -12084612 - AluSq SINE Alu -11 302 1 198 179 94 151 chr15 73613054 73613160 -12082594 + L2 LINE L2 3197 3296 -17 228 67 0 0 chr15 73613166 73613196 -12082558 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 342 255 49 134 chr15 73614809 73614940 -12080814 - MIR SINE MIR -7 255 153 2670 144 29 29 chr15 73614940 73615167 -12080587 - L1MB3 LINE L1 -2 6181 5955 2299 103 7 0 chr15 73615167 73615468 -12080286 - AluSg SINE Alu -7 303 1 2670 144 29 29 chr15 73615468 73615753 -12080001 - L1MB3 LINE L1 -227 5956 5669 342 255 49 134 chr15 73615753 73615868 -12079886 - MIR SINE MIR -109 153 30 1153 164 79 57 chr15 73617708 73618025 -12077729 - MER33 DNA MER1_type 0 324 1 189 357 111 0 chr15 73618130 73618256 -12077498 + L3b LINE CR1 1173 1312 -271 283 286 66 66 chr15 73618340 73618536 -12077218 + MIR SINE MIR 2 197 -65 191 280 0 0 chr15 73619069 73619119 -12076635 + L2 LINE L2 3221 3270 -2 2245 117 3 0 chr15 73619412 73619712 -12076042 + AluSx SINE Alu 1 301 -11 461 306 50 62 chr15 73620877 73621119 -12074635 - MIR SINE MIR -5 257 19 438 281 40 79 chr15 73622107 73622410 -12073344 + LTR16C LTR ERVL 199 489 -2 610 231 113 19 chr15 73622655 73622722 -12073032 - FAM SINE Alu -136 175 116 1697 177 7 0 chr15 73622722 73623016 -12072738 - AluJb SINE Alu -16 296 1 610 231 113 19 chr15 73623016 73623108 -12072646 - FAM SINE Alu -195 116 1 267 336 18 18 chr15 73623451 73623564 -12072190 - MER5A DNA MER1_type -70 119 7 510 303 82 0 chr15 73623686 73623894 -12071860 - LTR33A LTR ERVL -2 521 297 426 264 161 7 chr15 73624798 73624950 -12070804 - LTR33A LTR ERVL -309 214 55 2298 98 0 13 chr15 73625129 73625435 -12070319 + AluSx SINE Alu 1 302 -10 37 23 0 0 chr15 73625575 73625619 -12070135 + AT_rich Low_complexity Low_complexity 1 44 0 238 231 177 8 chr15 73625764 73625894 -12069860 + MER103 DNA DNA 9 160 -6 565 279 25 6 chr15 73625894 73626055 -12069699 - L2 LINE L2 -2 3311 3148 195 402 0 11 chr15 73626225 73626312 -12069442 + MIR SINE MIR 11 96 -166 407 325 47 0 chr15 73626398 73626567 -12069187 + MIR SINE MIR 86 262 0 218 223 46 85 chr15 73626586 73626716 -12069038 + L2 LINE L2 2734 2858 -456 9242 182 26 31 chr15 73628120 73628509 -12067245 + L1PA15 LINE L1 3319 3709 -2456 2832 93 3 3 chr15 73628509 73628864 -12066890 - THE1A LTR MaLR 0 355 1 9242 182 26 31 chr15 73628864 73630458 -12065296 + L1PA15 LINE L1 3709 5280 -885 1471 104 191 12 chr15 73630458 73630709 -12065045 + AluSg1 SINE Alu 14 309 0 9242 182 26 31 chr15 73630709 73631591 -12064163 + L1PA15 LINE L1 5280 6165 0 479 297 96 50 chr15 73631701 73632004 -12063750 + HAL1 LINE L1 1051 1367 -1140 1049 316 162 32 chr15 73632021 73632329 -12063425 - L2 LINE L2 -214 3099 2832 4180 157 65 1 chr15 73632329 73633004 -12062750 + MER72 LTR ERV1 5 722 0 1049 316 162 32 chr15 73633004 73633974 -12061780 - L2 LINE L2 -481 2832 1647 243 345 71 9 chr15 73634499 73634612 -12061142 + L2 LINE L2 3152 3271 -1 183 42 0 0 chr15 73634798 73634822 -12060932 + (ATG)n Simple_repeat Simple_repeat 2 25 0 234 308 71 76 chr15 73634965 73634980 -12060774 - MIR SINE MIR 0 262 248 9472 108 8 3 chr15 73634980 73636273 -12059481 - HSMAR2 DNA Mariner -2 1300 2 234 308 71 76 chr15 73636273 73636481 -12059273 - MIR SINE MIR -14 248 40 1454 175 20 8 chr15 73636486 73636766 -12058988 - AluSx SINE Alu 0 310 28 570 206 0 0 chr15 73637787 73637908 -12057846 - FRAM SINE Alu 0 170 50 257 196 159 75 chr15 73638530 73638637 -12057117 - L2 LINE L2 0 3272 3157 985 297 76 80 chr15 73640172 73641076 -12054678 + HAL1 LINE L1 271 1171 -1336 2347 92 0 0 chr15 73641076 73641369 -12054385 + AluSg1 SINE Alu 1 293 -16 985 297 76 80 chr15 73641369 73641588 -12054166 + HAL1 LINE L1 1171 1389 -1118 834 129 23 6 chr15 73641605 73641919 -12053835 + (CA)n Simple_repeat Simple_repeat 1 319 0 258 162 40 0 chr15 73641930 73642004 -12053750 + (CA)n Simple_repeat Simple_repeat 2 78 0 814 131 25 8 chr15 73642016 73642552 -12053202 + (CA)n Simple_repeat Simple_repeat 1 545 0 606 148 24 12 chr15 73642593 73642762 -12052992 + (CA)n Simple_repeat Simple_repeat 2 172 0 29711 36 1 5 chr15 73693477 73698055 -11997699 - L1PA4 LINE L1 -59 6096 1539 2444 86 16 70 chr15 73699071 73699456 -11996298 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr15 73700839 73700878 -11994876 + AT_rich Low_complexity Low_complexity 1 39 0 5045 98 30 45 chr15 73702694 73703486 -11992268 + LTR17 LTR ERV1 1 780 0 248 276 58 0 chr15 73703489 73703576 -11992178 + MER119 DNA MER1_type 479 570 -13 353 280 40 20 chr15 73703620 73703770 -11991984 - L1M4 LINE L1 -2579 3567 3415 2124 107 0 4 chr15 73703993 73704314 -11991440 - AluSg SINE Alu 0 320 1 1716 186 10 3 chr15 73704385 73704675 -11991079 - AluJo SINE Alu -10 302 11 330 248 179 18 chr15 73704765 73704983 -11990771 - L1M4 LINE L1 -3104 3042 2790 306 336 51 48 chr15 73704995 73705367 -11990387 - L1M4 LINE L1 -743 5403 5031 2202 274 49 29 chr15 73705440 73706346 -11989408 - MER69B DNA AcHobo -64 1162 239 414 266 0 0 chr15 73706416 73706510 -11989244 - MER81 DNA DNA -20 94 1 365 290 89 0 chr15 73706513 73706637 -11989117 - MER69B DNA AcHobo -1047 179 45 246 32 0 0 chr15 73707300 73707331 -11988423 + (TG)n Simple_repeat Simple_repeat 2 32 0 353 289 0 0 chr15 73707515 73707605 -11988149 + L1MC4 LINE L1 6614 6703 -1339 236 250 23 0 chr15 73707611 73707699 -11988055 + L1MC4 LINE L1 6614 6703 -1339 * 238 255 0 21 chr15 73707657 73707751 -11988003 - L1MC4 LINE L1 -1339 6703 6612 185 333 53 0 chr15 73707794 73707869 -11987885 + MIR SINE MIR 125 203 -59 418 272 136 33 chr15 73709130 73709314 -11986440 - MIR SINE MIR -3 259 57 355 178 163 39 chr15 73709423 73709552 -11986202 - MER104 DNA Tc2 -11 169 25 333 370 97 23 chr15 73710353 73710745 -11985009 + L2 LINE L2 2844 3264 -8 677 281 35 0 chr15 73710799 73710970 -11984784 + MER5B DNA MER1_type 2 178 0 351 241 66 174 chr15 73710976 73711188 -11984566 + MER5A DNA MER1_type 1 189 0 615 166 7 43 chr15 73711223 73711362 -11984392 - LTR12 LTR ERV1 -100 614 481 233 278 11 0 chr15 73711364 73711454 -11984300 - LTR30 LTR ERV1 -80 642 552 1699 147 3 7 chr15 73711454 73711740 -11984014 - LTR12 LTR ERV1 -429 285 1 1973 95 3 25 chr15 73711742 73712026 -11983728 + AluSx SINE Alu 33 310 -2 399 274 121 25 chr15 73712330 73712546 -11983208 - MIR SINE MIR -3 259 30 2463 75 44 33 chr15 73712675 73713035 -11982719 + THE1B LTR MaLR 1 364 0 236 288 0 15 chr15 73713282 73713348 -11982406 - L2 LINE L2 -40 3232 3168 345 100 0 0 chr15 73713509 73713559 -11982195 + (TG)n Simple_repeat Simple_repeat 2 51 0 2003 140 17 0 chr15 73715173 73715466 -11980288 - AluSx SINE Alu -14 298 1 479 219 32 0 chr15 73715792 73715947 -11979807 + L1MB2 LINE L1 4249 4408 -1738 1610 199 30 3 chr15 73715960 73716322 -11979432 - L1 LINE L1 -3124 3022 2651 281 143 0 0 chr15 73716312 73716361 -11979393 + L1MA7 LINE L1 6060 6108 -183 * 336 70 35 0 chr15 73716397 73716454 -11979300 + AluSc SINE Alu 236 294 -5 265 93 0 0 chr15 73716450 73716493 -11979261 - MADE1 DNA Mariner -37 43 1 * 564 205 92 0 chr15 73716496 73716681 -11979073 + L1MA9 LINE L1 6109 6310 -2 621 168 95 0 chr15 73716778 73716915 -11978839 - L1MA4 LINE L1 0 6300 6151 3856 203 37 18 chr15 73716934 73718629 -11977125 + L1MB2 LINE L1 4432 6145 -26 1847 68 140 0 chr15 73718806 73719070 -11976684 + AluY SINE Alu 1 301 0 2187 107 3 10 chr15 73720319 73720627 -11975127 - AluSx SINE Alu -6 306 1 1036 206 10 51 chr15 73721127 73721409 -11974345 + MLT1B LTR MaLR 7 249 -116 2518 59 0 3 chr15 73721485 73721788 -11973966 + AluY SINE Alu 1 302 -9 669 246 79 0 chr15 73722941 73723144 -11972610 + MSTD LTR MaLR 3 221 -175 1539 153 54 75 chr15 73723149 73723521 -11972233 + THE1C LTR MaLR 1 364 -11 616 222 78 7 chr15 73723564 73723717 -11972037 + MSTD LTR MaLR 233 396 0 1158 261 72 17 chr15 73724019 73724433 -11971321 - MLT1C LTR MaLR 0 467 31 4580 190 19 27 chr15 73724435 73724467 -11971287 + L1MA9 LINE L1 4888 4919 -1393 2255 94 0 7 chr15 73724467 73724755 -11970999 + AluSg SINE Alu 1 286 -24 203 0 0 36 chr15 73724758 73724786 -11970968 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4580 190 19 27 chr15 73724786 73726160 -11969594 + L1MA9 LINE L1 4921 6282 -30 2330 215 97 3 chr15 73726166 73727304 -11968450 + L1MDa LINE L1 83 1313 -5227 1962 85 0 11 chr15 73727309 73727569 -11968185 - AluY SINE Alu -19 292 36 258 185 0 0 chr15 73728344 73728398 -11967356 - L1MC4 LINE L1 -1337 6705 6652 270 329 0 0 chr15 73728404 73728562 -11967192 + (TA)n Simple_repeat Simple_repeat 2 159 0 221 222 0 37 chr15 73728568 73728622 -11967132 + (TATG)n Simple_repeat Simple_repeat 2 53 0 430 179 11 74 chr15 73728625 73728815 -11966939 + (TACG)n Simple_repeat Simple_repeat 1 178 0 * 594 259 0 18 chr15 73728778 73729111 -11966643 + (TATATG)n Simple_repeat Simple_repeat 1 327 0 312 294 0 22 chr15 73729128 73729220 -11966534 + L1MC4 LINE L1 6614 6703 -1339 309 322 0 0 chr15 73729144 73729234 -11966520 - L1MC4 LINE L1 -1339 6703 6614 * 243 256 0 22 chr15 73729266 73729356 -11966398 + L1MC4 LINE L1 6614 6701 -1341 552 258 0 0 chr15 73729359 73729526 -11966228 + (TA)n Simple_repeat Simple_repeat 1 167 0 522 274 0 0 chr15 73729545 73729724 -11966030 + (TA)n Simple_repeat Simple_repeat 2 180 0 324 238 71 0 chr15 73729737 73729821 -11965933 - L1MC4 LINE L1 -1339 6703 6614 307 235 0 82 chr15 73729807 73729905 -11965849 + L1MC4 LINE L1 6614 6703 -1339 * 306 290 0 21 chr15 73729835 73729928 -11965826 - L1MC4 LINE L1 -1339 6703 6613 * 486 195 0 71 chr15 73729929 73730512 -11965242 + (CATATA)n Simple_repeat Simple_repeat 1 541 0 513 261 0 0 chr15 73730534 73730714 -11965040 + (TA)n Simple_repeat Simple_repeat 1 180 0 335 250 0 42 chr15 73730715 73730811 -11964943 + L1MC4 LINE L1 6614 6705 -1337 336 233 22 22 chr15 73730817 73730907 -11964847 - L1MC4 LINE L1 -1339 6703 6614 329 275 0 22 chr15 73730890 73730981 -11964773 + L1MC4 LINE L1 6615 6703 -1339 * 332 272 0 22 chr15 73730938 73731080 -11964674 - L1MC4 LINE L1 -1339 6703 6614 320 226 0 43 chr15 73731082 73731175 -11964579 + L1MC4 LINE L1 6615 6703 -1339 * 321 236 22 22 chr15 73731095 73731184 -11964570 - L1MC4 LINE L1 -1339 6703 6615 225 178 0 0 chr15 73731185 73731230 -11964524 + (TA)n Simple_repeat Simple_repeat 1 45 0 668 228 46 41 chr15 73731719 73731938 -11963816 + MIR SINE MIR 14 233 -29 22 0 0 0 chr15 73732565 73732587 -11963167 + AT_rich Low_complexity Low_complexity 1 22 0 312 286 77 22 chr15 73734877 73734976 -11960778 - MER117 DNA MER1_type -2 195 103 2542 57 0 0 chr15 73734976 73735272 -11960482 - AluY SINE Alu -15 296 1 312 286 77 22 chr15 73735272 73735354 -11960400 - MER117 DNA MER1_type -94 103 4 294 276 10 0 chr15 73735601 73735699 -11960055 - L1ME4a LINE L1 -219 5902 5804 3443 187 46 8 chr15 73736806 73736846 -11958908 - L1MB3 LINE L1 0 6183 6146 2435 74 0 0 chr15 73736846 73737145 -11958609 - AluSp SINE Alu -14 299 1 3443 187 46 8 chr15 73737145 73737868 -11957886 - L1MB3 LINE L1 -37 6146 5391 220 323 0 16 chr15 73737936 73737998 -11957756 + MIR SINE MIR 33 93 -115 317 308 140 23 chr15 73739812 73740033 -11955721 + MIR SINE MIR 2 248 -14 217 94 0 0 chr15 73740952 73740984 -11954770 + L2 LINE L2 3119 3150 -163 21 0 0 0 chr15 73740986 73741007 -11954747 + AT_rich Low_complexity Low_complexity 1 21 0 2248 130 17 0 chr15 73741531 73741885 -11953869 + MER46B DNA MER2_type 2 236 0 474 288 131 55 chr15 73742339 73742721 -11953033 + L2 LINE L2 2624 3037 -276 2360 103 0 6 chr15 73743048 73743360 -11952394 - AluSg SINE Alu 0 310 1 1607 161 38 31 chr15 73743362 73743653 -11952101 - AluSx SINE Alu -19 293 1 470 171 29 71 chr15 73744333 73744503 -11951251 - Charlie7 DNA MER1_type -1 2611 2449 263 235 20 41 chr15 73744509 73744607 -11951147 - Charlie7 DNA MER1_type -2512 100 5 3684 111 19 54 chr15 73746199 73746831 -11948923 + MER4B LTR ERV1 1 610 0 27 0 0 0 chr15 73747588 73747615 -11948139 + AT_rich Low_complexity Low_complexity 1 27 0 1915 148 0 44 chr15 73748131 73748449 -11947305 - AluSx SINE Alu -8 304 1 2751 218 45 2 chr15 73748746 73749351 -11946403 + MER82 DNA MER2_type 1 631 -22 464 283 97 40 chr15 73749660 73749805 -11945949 + MIR SINE MIR 6 170 -92 2479 53 0 10 chr15 73749805 73750105 -11945649 + AluY SINE Alu 1 297 -14 464 283 97 40 chr15 73750105 73750185 -11945569 + MIR SINE MIR 170 244 -18 282 238 24 32 chr15 73751097 73751223 -11944531 + L1MB8 LINE L1 6053 6177 -1 216 283 0 0 chr15 73751532 73751578 -11944176 + (CA)n Simple_repeat Simple_repeat 2 47 0 539 292 7 7 chr15 73751819 73751973 -11943781 + L2 LINE L2 3159 3312 -1 245 241 181 15 chr15 73751973 73752106 -11943648 - Charlie7 DNA MER1_type -2457 155 1 1841 237 48 57 chr15 73752559 73753248 -11942506 - L1ME1 LINE L1 -16 6150 5468 2434 93 0 3 chr15 73753344 73753656 -11942098 - AluY SINE Alu 0 311 1 2272 95 3 29 chr15 73753664 73753980 -11941774 - AluSq SINE Alu -5 308 1 249 329 63 14 chr15 73755532 73755739 -11940015 + MER20 DNA MER1_type 3 219 0 280 310 52 9 chr15 73755785 73755901 -11939853 + MIR SINE MIR 121 241 -21 591 273 58 61 chr15 73755931 73756438 -11939316 + L2 LINE L2 2741 3263 -50 824 352 72 38 chr15 73757959 73758544 -11937210 + L2 LINE L2 1787 2391 -923 399 260 73 25 chr15 73758761 73758965 -11936789 + L1M4 LINE L1 2715 2928 -3218 628 231 30 34 chr15 73759678 73759946 -11935808 + L1M4 LINE L1 2910 3176 -2970 823 294 117 24 chr15 73759984 73760702 -11935052 + L1M4 LINE L1 3264 4048 -2098 2247 87 13 3 chr15 73761338 73761637 -11934117 - AluY SINE Alu -9 302 1 363 282 155 43 chr15 73762053 73762166 -11933588 + L1ME LINE L1 3692 3791 -2355 2787 3 0 0 chr15 73762166 73762467 -11933287 + AluYa5 SINE Alu 1 301 -10 363 282 155 43 chr15 73762467 73763031 -11932723 + L1ME LINE L1 3791 4445 -1701 3253 177 15 32 chr15 73763092 73763810 -11931944 + L1MC2 LINE L1 5612 6317 -27 259 278 70 48 chr15 73763842 73764112 -11931642 + L1ME LINE L1 4518 4793 -1353 355 301 82 29 chr15 73764148 73764354 -11931400 + L1ME LINE L1 4860 5076 -1070 180 0 0 0 chr15 73764354 73764374 -11931380 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 1554 178 38 22 chr15 73764377 73764697 -11931057 - L1PA15 LINE L1 -7 6809 6485 10421 235 35 16 chr15 73764697 73768796 -11926958 - L1PA15 LINE L1 -1248 5549 1330 2160 307 5 38 chr15 73768809 73769590 -11926164 - L1PA15 LINE L1 -6032 755 1 393 265 41 36 chr15 73769742 73769947 -11925807 + L1ME LINE L1 5434 5645 -479 2156 206 70 4 chr15 73770791 73771291 -11924463 - MER68 LTR ERV1 -9 553 21 3298 220 105 65 chr15 73774253 73775545 -11920209 + L1MD2 LINE L1 774 2013 -4393 1058 283 148 29 chr15 73775545 73776104 -11919650 + MLT1E2 LTR MaLR 1 626 0 3298 220 105 65 chr15 73776104 73777122 -11918632 + L1MD2 LINE L1 2013 2989 -3417 2254 107 7 0 chr15 73777122 73777422 -11918332 + AluSq SINE Alu 1 302 -11 3298 220 105 65 chr15 73777422 73777605 -11918149 + L1MD2 LINE L1 2989 3163 -3243 846 242 62 0 chr15 73777605 73777816 -11917938 - MER58A DNA MER1_type 0 224 1 3298 220 105 65 chr15 73777816 73778000 -11917754 + L1MD2 LINE L1 3163 3503 -2903 3136 242 98 13 chr15 73777988 73779290 -11916464 + L1MD2 LINE L1 4275 5691 -743 * 2391 216 78 17 chr15 73779472 73780116 -11915638 + L1MD2 LINE L1 5710 6392 -227 190 358 156 0 chr15 73780582 73780691 -11915063 - MER5A DNA MER1_type -4 185 60 1984 132 10 3 chr15 73780738 73781034 -11914720 - AluSx SINE Alu -1 311 14 1192 123 0 6 chr15 73781550 73781720 -11914034 + FRAM SINE Alu 1 161 -15 417 267 23 74 chr15 73782194 73782370 -11913384 - MIR SINE MIR -8 254 88 276 295 74 40 chr15 73782470 73782619 -11913135 - MIR SINE MIR -93 169 16 733 233 6 0 chr15 73783428 73783591 -11912163 + MER58B DNA MER1_type 178 341 0 186 156 0 0 chr15 73783942 73783987 -11911767 + T-rich Low_complexity Low_complexity 1 45 0 243 125 0 0 chr15 73784554 73784594 -11911160 + (TC)n Simple_repeat Simple_repeat 2 41 0 1757 148 8 0 chr15 73784942 73785205 -11910549 + AluSx SINE Alu 37 301 -11 223 45 15 91 chr15 73785215 73785281 -11910473 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 1952 153 86 7 chr15 73785325 73785757 -11909997 + L1MD1 LINE L1 1880 2345 -4195 223 235 20 0 chr15 73785767 73785818 -11909936 + (TA)n Simple_repeat Simple_repeat 2 53 0 383 130 29 0 chr15 73785820 73785889 -11909865 + L1MD1 LINE L1 2326 2396 -4144 635 237 0 0 chr15 73785889 73786024 -11909730 + FLAM_C SINE Alu 1 135 -8 2609 221 66 4 chr15 73786026 73786994 -11908760 + L1MD1 LINE L1 2390 3413 -3127 18142 112 22 7 chr15 73786994 73789612 -11906142 - Charlie3 DNA MER1_type -4 2706 47 1828 227 96 20 chr15 73789614 73790063 -11905691 + L1MA1 LINE L1 301 783 -6782 687 97 70 0 chr15 73790058 73790172 -11905582 + L1PA8 LINE L1 5220 5341 -805 * 1550 101 0 5 chr15 73790172 73790407 -11905347 + L1PA8 LINE L1 5949 6172 0 10966 145 26 7 chr15 73790408 73793521 -11902233 + L1MA1 LINE L1 4507 7686 -35 405 0 0 0 chr15 73793521 73793566 -11902188 + (TA)n Simple_repeat Simple_repeat 2 46 0 10966 145 26 7 chr15 73793566 73793597 -11902157 + L1MA1 LINE L1 7686 7715 -6 2689 231 43 44 chr15 73793633 73795903 -11899851 + L1MD1 LINE L1 3424 5695 -941 2641 45 3 0 chr15 73795903 73796213 -11899541 + AluY SINE Alu 1 311 0 2689 231 43 44 chr15 73796213 73796358 -11899396 + L1MD1 LINE L1 5695 5839 -797 2327 103 3 0 chr15 73796358 73796658 -11899096 + AluSp SINE Alu 1 301 -12 2689 231 43 44 chr15 73796658 73796972 -11898782 + L1MD1 LINE L1 5839 6311 -325 460 311 25 47 chr15 73798126 73798325 -11897429 - MLT1K LTR MaLR -224 364 171 1537 322 65 20 chr15 73798325 73798987 -11896767 - MER115 DNA AcHobo -1 692 1 460 311 25 47 chr15 73798987 73799064 -11896690 - MLT1K LTR MaLR -417 171 94 227 346 33 26 chr15 73799615 73799768 -11895986 - MIR SINE MIR -74 188 35 292 290 60 10 chr15 73800380 73800480 -11895274 + MER81 DNA DNA 1 105 -9 680 230 56 11 chr15 73800523 73800701 -11895053 + MER58A DNA MER1_type 30 215 -9 288 269 45 52 chr15 73801192 73801326 -11894428 + MIR SINE MIR 130 262 0 234 0 0 0 chr15 73801704 73801730 -11894024 + (T)n Simple_repeat Simple_repeat 1 26 0 319 361 44 28 chr15 73802180 73802360 -11893394 - MIR3 SINE MIR -10 198 16 343 336 35 21 chr15 73802960 73803103 -11892651 + MIR SINE MIR 47 191 -71 225 65 0 0 chr15 73803141 73803172 -11892582 + (TTA)n Simple_repeat Simple_repeat 2 32 0 228 281 16 31 chr15 73803172 73803236 -11892518 + L2 LINE L2 2549 2611 -703 377 308 21 28 chr15 73803321 73803464 -11892290 - MER46C DNA MER2_type -4 334 193 3078 206 7 2 chr15 73803478 73804028 -11891726 - MER68 LTR ERV1 0 562 10 507 207 0 114 chr15 73804036 73804229 -11891525 - MER46C DNA MER2_type -158 180 10 2921 6 0 0 chr15 73804264 73804579 -11891175 - AluYb8 SINE Alu -3 315 1 194 125 0 25 chr15 73804585 73804625 -11891129 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 1114 200 65 77 chr15 73804647 73804860 -11890894 + L1MC1 LINE L1 1913 2127 -4269 2212 98 0 0 chr15 73804860 73805145 -11890609 + AluSg SINE Alu 1 285 -25 255 61 0 0 chr15 73805145 73805178 -11890576 + (TA)n Simple_repeat Simple_repeat 2 34 0 1114 200 65 77 chr15 73805178 73805442 -11890312 + L1MC1 LINE L1 2125 2385 -4011 * 1895 229 18 60 chr15 73805441 73806071 -11889683 + L1MC1 LINE L1 4721 5323 -892 900 159 6 0 chr15 73806518 73806688 -11889066 + L1MC1 LINE L1 5325 5495 -907 2480 169 18 2 chr15 73806688 73807124 -11888630 + L1MC1 LINE L1 5957 6402 0 709 259 48 3 chr15 73807126 73807416 -11888338 + L1MEc LINE L1 2342 2644 -3571 44 0 0 0 chr15 73807445 73807489 -11888265 + AT_rich Low_complexity Low_complexity 1 44 0 634 237 44 22 chr15 73807559 73807833 -11887921 + L1MEc LINE L1 2668 2947 -3268 250 232 18 0 chr15 73807894 73807950 -11887804 + L1MA10 LINE L1 6214 6270 -64 180 111 0 0 chr15 73807953 73807980 -11887774 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2648 42 0 0 chr15 73808862 73809170 -11886584 + AluY SINE Alu 1 308 -3 2067 211 15 41 chr15 73809686 73810237 -11885517 + L1MD3 LINE L1 6256 6357 -2 2079 113 11 0 chr15 73810734 73811040 -11884714 - AluSx SINE Alu 0 309 1 21476 31 3 0 chr15 73811082 73814446 -11881308 - L1PA4 LINE L1 -1 6154 2783 1491 196 62 10 chr15 73814572 73814959 -11880795 + LTR37A LTR ERV1 8 414 -12 318 256 77 13 chr15 73815435 73815513 -11880241 + MIR SINE MIR 13 95 -167 3754 40 4 15 chr15 73815652 73816122 -11879632 + L1PA4 LINE L1 5691 6155 0 214 309 33 72 chr15 73816210 73816362 -11879392 - MIR3 SINE MIR -45 163 18 11406 157 22 10 chr15 73816822 73817608 -11878146 + L1MA3 LINE L1 3049 3824 -2550 2097 127 0 7 chr15 73817608 73817915 -11877839 + AluY SINE Alu 1 305 -6 11406 157 22 10 chr15 73817915 73820412 -11875342 + L1MA3 LINE L1 3824 6374 0 8922 83 14 6 chr15 73820505 73822524 -11873230 + L1PA8 LINE L1 4080 6102 -70 424 125 25 0 chr15 73822524 73822604 -11873150 + AluJ/FRAM SINE Alu 231 312 0 916 222 73 74 chr15 73822613 73823030 -11872724 + L1ME2 LINE L1 5631 6058 -106 341 286 44 50 chr15 73823161 73823343 -11872411 + L1MC4 LINE L1 7861 8041 -1 196 237 269 21 chr15 73823488 73823581 -11872173 - MIR SINE MIR -78 184 69 206 214 89 18 chr15 73824788 73824844 -11870910 - MIR3 SINE MIR -139 69 10 2609 259 94 50 chr15 73824943 73826229 -11869525 + L1MEc LINE L1 35 1377 -5019 1534 223 104 27 chr15 73826284 73826803 -11868951 + MLT1F1 LTR MaLR 10 565 -2 2238 124 0 0 chr15 73826988 73827295 -11868459 - AluSg1 SINE Alu -2 307 1 248 364 152 13 chr15 73829702 73829853 -11865901 + L2 LINE L2 3070 3241 -31 225 360 78 10 chr15 73832797 73833002 -11862752 + MIR SINE MIR 45 262 0 495 261 50 96 chr15 73833102 73833363 -11862391 - MIR SINE MIR -2 260 12 446 303 192 5 chr15 73835649 73835857 -11859897 - MIR SINE MIR -15 247 1 582 140 132 0 chr15 73836997 73837111 -11858643 - MER69 DNA AcHobo 0 2526 2398 2188 110 3 10 chr15 73837753 73838053 -11857701 + AluSq SINE Alu 1 298 -15 689 209 80 25 chr15 73838091 73838254 -11857500 + MER5A DNA MER1_type 18 189 0 685 247 85 14 chr15 73838373 73838596 -11857158 - MIR SINE MIR -4 258 20 327 49 0 0 chr15 73839148 73839189 -11856565 + (T)n Simple_repeat Simple_repeat 1 41 0 323 253 40 61 chr15 73839416 73839515 -11856239 - L2 LINE L2 -1 3271 3175 217 304 128 47 chr15 73839592 73840000 -11855754 - L2 LINE L2 -669 2645 2205 5043 115 26 30 chr15 73840209 73840989 -11854765 + MER4E LTR ERV1 3 779 0 422 351 71 0 chr15 73841308 73841462 -11854292 - L2 LINE L2 -1 3271 3107 252 90 0 90 chr15 73841795 73841873 -11853881 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 368 256 63 8 chr15 73842997 73843119 -11852635 - MIR SINE MIR -62 146 62 470 291 189 5 chr15 73844969 73845165 -11850589 + MIR SINE MIR 28 259 -3 334 220 22 22 chr15 73845670 73845761 -11849993 - L1MC4 LINE L1 -1337 6705 6615 219 187 0 66 chr15 73845764 73845855 -11849899 + (TATG)n Simple_repeat Simple_repeat 1 85 0 228 303 22 22 chr15 73845866 73845955 -11849799 - L1MC4 LINE L1 -1339 6703 6615 * 238 329 24 0 chr15 73845927 73846012 -11849742 + L1MC4 LINE L1 6615 6701 -1341 225 316 51 0 chr15 73846023 73846102 -11849652 + L1MC4 LINE L1 6619 6701 -1341 422 199 21 54 chr15 73846103 73846289 -11849465 + (CGTA)n Simple_repeat Simple_repeat 1 180 0 331 294 25 8 chr15 73846294 73846413 -11849341 + (CATATA)n Simple_repeat Simple_repeat 4 124 0 377 130 29 0 chr15 73846654 73846723 -11849031 + C-rich Low_complexity Low_complexity 4 74 0 2408 79 0 10 chr15 73847889 73848192 -11847562 + AluY SINE Alu 1 300 -11 198 323 61 10 chr15 73848203 73848302 -11847452 - L2 LINE L2 -1 3271 3168 358 128 0 0 chr15 73849045 73849092 -11846662 - MLT2A1 LTR ERVL -135 309 263 998 127 25 71 chr15 73850493 73850690 -11845064 - THE1B LTR MaLR -2 362 175 260 28 111 0 chr15 73850690 73850726 -11845028 - MLT2A1 LTR ERVL 0 444 405 382 57 0 57 chr15 73850726 73850814 -11844940 + (TA)n Simple_repeat Simple_repeat 1 83 0 3280 65 38 5 chr15 73850814 73851231 -11844523 - MLT2A1 LTR ERVL -13 431 1 1030 132 42 6 chr15 73851231 73851397 -11844357 - THE1B LTR MaLR -185 179 8 1925 171 0 0 chr15 73851824 73852123 -11843631 + AluSx SINE Alu 1 299 -13 874 211 32 41 chr15 73852712 73853012 -11842742 + MLT1A2 LTR MaLR 1 370 -4 242 348 0 0 chr15 73853127 73853216 -11842538 + (TA)n Simple_repeat Simple_repeat 2 90 0 400 300 17 8 chr15 73854016 73854136 -11841618 - MIR SINE MIR -118 144 24 1233 246 78 28 chr15 73854766 73855281 -11840473 - L2 LINE L2 -22 3291 2742 23 33 0 0 chr15 73855619 73855649 -11840105 + AT_rich Low_complexity Low_complexity 1 30 0 229 333 10 10 chr15 73855729 73855825 -11839929 + L2 LINE L2 3177 3272 0 349 253 42 11 chr15 73855887 73855982 -11839772 - MIR SINE MIR -155 107 10 735 249 122 10 chr15 73856364 73856561 -11839193 - MER58A DNA MER1_type 0 224 6 1046 245 42 58 chr15 73857728 73858169 -11837585 + L1ME1 LINE L1 5743 6184 0 563 198 0 21 chr15 73858170 73858266 -11837488 + AluJ/FLAM SINE Alu 2 95 -217 60 77 0 0 chr15 73858305 73858435 -11837319 + AT_rich Low_complexity Low_complexity 1 130 0 1081 179 0 15 chr15 73858435 73858636 -11837118 + AluJo SINE Alu 115 312 0 2241 120 0 7 chr15 73858682 73858991 -11836763 - AluSx SINE Alu -5 307 1 2329 103 0 0 chr15 73861085 73861387 -11834367 + AluSg SINE Alu 1 302 -8 196 332 125 19 chr15 73863393 73863601 -11832153 + MIR SINE MIR 23 252 -10 230 266 32 29 chr15 73863912 73864032 -11831722 - L1P4 LINE L1 -370 5796 5674 622 301 25 5 chr15 73864060 73864256 -11831498 + MIR SINE MIR 6 205 -57 372 255 133 21 chr15 73864257 73864445 -11831309 - L1M4 LINE L1 -819 5327 5119 241 281 87 27 chr15 73864584 73864769 -11830985 - L1MEd LINE L1 -4999 1120 925 2471 73 30 0 chr15 73865937 73866237 -11829517 - AluSg SINE Alu -1 309 1 324 260 22 94 chr15 73866939 73867063 -11828691 - MER117 DNA MER1_type -17 180 71 979 232 0 0 chr15 73867063 73867248 -11828506 - MER5A DNA MER1_type 0 189 5 324 260 22 94 chr15 73867248 73867304 -11828450 - MER117 DNA MER1_type -126 71 13 2485 67 3 0 chr15 73867806 73868105 -11827649 - AluY SINE Alu -11 300 1 196 282 24 97 chr15 73868381 73868505 -11827249 - MIR3 SINE MIR -8 200 86 256 274 212 28 chr15 73868556 73868676 -11827078 + MIR SINE MIR 50 147 -115 2596 127 58 0 chr15 73868676 73869103 -11826651 + L1MA4 LINE L1 5841 6292 -8 256 274 212 28 chr15 73869103 73869161 -11826593 + MIR SINE MIR 147 261 -1 2330 177 30 32 chr15 73869346 73869781 -11825973 - Tigger2a DNA MER2_type 0 434 1 711 228 88 16 chr15 73870071 73870264 -11825490 - MER58A DNA MER1_type -17 207 1 244 250 0 67 chr15 73871488 73871608 -11824146 + CT-rich Low_complexity Low_complexity 1 112 0 213 145 43 43 chr15 73872433 73872502 -11823252 + (TTA)n Simple_repeat Simple_repeat 2 70 0 2427 82 0 3 chr15 73873477 73873783 -11821971 - AluSc SINE Alu -4 305 1 255 296 77 77 chr15 73873927 73874237 -11821517 - L1ME LINE L1 -337 5784 5472 2183 91 0 45 chr15 73874237 73874546 -11821208 - AluSx SINE Alu -17 295 1 255 296 77 77 chr15 73874546 73874614 -11821140 - L1ME LINE L1 -648 5473 5406 2501 68 0 3 chr15 73875783 73876092 -11819662 - AluY SINE Alu -3 308 1 1118 275 141 20 chr15 73876363 73876865 -11818889 - MLT1G LTR MaLR -18 572 10 1795 212 39 4 chr15 73876962 73877006 -11818748 - L1MA9 LINE L1 -38 6274 6233 2261 133 82 12 chr15 73877006 73877406 -11818348 - MSTA LTR MaLR 0 428 1 1795 212 39 4 chr15 73877406 73877824 -11817930 - L1MA9 LINE L1 -79 6233 5796 1780 174 3 0 chr15 73878395 73878698 -11817056 - AluJb SINE Alu 0 304 1 21 0 0 0 chr15 73880109 73880130 -11815624 + AT_rich Low_complexity Low_complexity 1 21 0 1890 117 0 11 chr15 73880636 73880901 -11814853 + AluSg SINE Alu 18 279 -31 22 56 0 0 chr15 73881053 73881089 -11814665 + AT_rich Low_complexity Low_complexity 1 36 0 221 409 0 0 chr15 73881892 73881985 -11813769 - MIR SINE MIR -66 142 50 1552 196 0 47 chr15 73882195 73882512 -11813242 - AluJo SINE Alu -10 302 1 415 303 75 52 chr15 73883222 73883489 -11812265 + L1MC4 LINE L1 5607 5879 -1929 330 294 0 29 chr15 73884327 73884429 -11811325 + L1MC4 LINE L1 6605 6703 -1339 219 267 0 0 chr15 73885331 73885376 -11810378 + (TG)n Simple_repeat Simple_repeat 1 45 0 262 238 88 12 chr15 73885810 73885890 -11809864 - L2 LINE L2 -4 3309 3224 180 0 0 0 chr15 73886153 73886173 -11809581 + (T)n Simple_repeat Simple_repeat 1 20 0 201 265 0 0 chr15 73890217 73890300 -11805454 + (TA)n Simple_repeat Simple_repeat 2 84 0 318 277 0 43 chr15 73890330 73890424 -11805330 - L1MC4 LINE L1 -1339 6703 6614 213 240 0 0 chr15 73890430 73890480 -11805274 + (TA)n Simple_repeat Simple_repeat 2 51 0 617 213 6 0 chr15 73890564 73890738 -11805016 + (TA)n Simple_repeat Simple_repeat 1 175 0 610 287 108 5 chr15 73891307 73891530 -11804224 + MIR SINE MIR 11 256 -6 21 0 0 0 chr15 73892981 73893002 -11802752 + AT_rich Low_complexity Low_complexity 1 21 0 276 77 0 0 chr15 73895549 73895588 -11800166 + (CA)n Simple_repeat Simple_repeat 1 39 0 582 144 6 42 chr15 73895989 73896156 -11799598 + CT-rich Low_complexity Low_complexity 2 162 0 231 181 42 0 chr15 73896663 73896735 -11799019 + CT-rich Low_complexity Low_complexity 1 75 0 307 210 70 28 chr15 73897170 73897313 -11798441 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 2136 62 0 0 chr15 73897810 73898067 -11797687 + AluY SINE Alu 42 298 -13 615 248 87 0 chr15 73898195 73898356 -11797398 + MER5A DNA MER1_type 15 189 0 347 257 171 46 chr15 73898475 73898536 -11797218 - MER96 DNA MER1_type -3 172 120 2001 103 66 0 chr15 73898536 73898809 -11796945 + AluSx SINE Alu 1 291 -21 347 257 171 46 chr15 73898809 73898899 -11796855 - MER96 DNA MER1_type -55 120 2 29 28 0 0 chr15 73899258 73899294 -11796460 + AT_rich Low_complexity Low_complexity 1 36 0 266 239 0 0 chr15 73902080 73902147 -11793607 + (TA)n Simple_repeat Simple_repeat 1 67 0 189 74 0 0 chr15 73902244 73902271 -11793483 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2074 123 29 29 chr15 73902514 73902889 -11792865 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr15 73904261 73904282 -11791472 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 73904567 73904593 -11791161 + AT_rich Low_complexity Low_complexity 1 26 0 191 286 0 48 chr15 73905219 73905282 -11790472 - MIR SINE MIR -122 140 81 207 69 0 0 chr15 73905772 73905801 -11789953 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 295 324 43 29 chr15 73907900 73908039 -11787715 - MIR3 SINE MIR -49 159 19 257 360 22 0 chr15 73908172 73908261 -11787493 - MER20B DNA MER1_type -619 164 74 279 0 0 0 chr15 73909315 73909346 -11786408 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr15 73910343 73910367 -11785387 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr15 73910590 73910622 -11785132 + (T)n Simple_repeat Simple_repeat 1 32 0 328 331 101 37 chr15 73912729 73913025 -11782729 - L2 LINE L2 -44 3228 2914 21 36 0 0 chr15 73913555 73913583 -11782171 + AT_rich Low_complexity Low_complexity 1 28 0 738 226 35 15 chr15 73913627 73913826 -11781928 + MER58A DNA MER1_type 1 203 -21 1072 133 0 30 chr15 73921194 73921360 -11774394 - AluSg/x SINE Alu -18 294 134 1957 165 59 20 chr15 73924468 73924874 -11770880 - MSTA LTR MaLR -6 422 1 186 43 0 0 chr15 73925072 73925095 -11770659 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 181 323 219 0 chr15 73925939 73926035 -11769719 + MIR3 SINE MIR 44 160 -48 * 196 213 200 0 chr15 73926004 73926079 -11769675 + MIR SINE MIR 162 251 -11 1616 203 0 35 chr15 73927744 73928060 -11767694 + AluJo SINE Alu 1 305 -7 273 246 15 0 chr15 73928371 73928436 -11767318 + L2 LINE L2 3206 3271 -1 212 171 0 0 chr15 73928561 73928602 -11767152 + T-rich Low_complexity Low_complexity 1 41 0 399 59 59 70 chr15 73929184 73929440 -11766314 + (TA)n Simple_repeat Simple_repeat 1 253 0 2226 122 0 0 chr15 73929990 73930284 -11765470 + AluSx SINE Alu 1 294 -18 346 298 8 16 chr15 73931778 73931899 -11763855 + LTR67 LTR ERVL 432 551 -6 2160 127 48 20 chr15 73932950 73933304 -11762450 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr15 73936307 73936334 -11759420 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 357 118 54 11 chr15 73936592 73936685 -11759069 + CT-rich Low_complexity Low_complexity 1 97 0 881 240 9 18 chr15 73936718 73936939 -11758815 - MER20 DNA MER1_type 0 219 1 1078 325 62 11 chr15 73937080 73937660 -11758094 - L2 LINE L2 0 3313 2713 513 337 109 0 chr15 73938186 73938388 -11757366 - MIR SINE MIR -37 225 2 705 24 0 0 chr15 73939554 73939637 -11756117 + (TA)n Simple_repeat Simple_repeat 1 83 0 2376 112 0 0 chr15 73940222 73940534 -11755220 - AluSx SINE Alu 0 312 1 2230 92 0 3 chr15 73941594 73941887 -11753867 + AluY SINE Alu 1 292 -19 2226 98 0 10 chr15 73942037 73942359 -11753395 + AluSg SINE Alu 1 310 0 259 239 84 0 chr15 73942383 73942454 -11753300 + MIR SINE MIR 118 194 -68 2321 115 0 10 chr15 73943272 73943586 -11752168 + AluSx SINE Alu 1 311 -1 488 314 51 59 chr15 73943635 73943871 -11751883 + MIR SINE MIR 10 243 -19 2285 114 0 0 chr15 73943988 73944287 -11751467 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 73945210 73945252 -11750502 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr15 73945906 73945930 -11749824 + AT_rich Low_complexity Low_complexity 1 24 0 255 234 81 4 chr15 73946257 73946421 -11749333 + L1ME LINE L1 5722 5789 -373 1527 221 20 6 chr15 73947827 73948185 -11747569 - L1MD3 LINE L1 -23 7972 7610 252 246 44 70 chr15 73948895 73949009 -11746745 + MIR SINE MIR 73 183 -79 207 360 0 0 chr15 73949591 73949666 -11746088 + CT-rich Low_complexity Low_complexity 1 75 0 436 178 305 0 chr15 73950771 73950889 -11744865 - MIR SINE MIR -21 241 88 279 146 0 0 chr15 73951019 73951074 -11744680 + (TC)n Simple_repeat Simple_repeat 2 56 0 206 366 84 0 chr15 73952141 73952283 -11743471 - MIR3 SINE MIR -28 180 27 2248 115 3 0 chr15 73953799 73954103 -11741651 - AluSg SINE Alu -5 305 1 640 271 64 18 chr15 73955668 73955886 -11739868 - MIR SINE MIR -33 229 2 378 0 0 0 chr15 73957280 73957322 -11738432 + (CA)n Simple_repeat Simple_repeat 1 42 0 2918 57 31 0 chr15 73958514 73958900 -11736854 + MLT2A1 LTR ERVL 1 398 -46 330 71 0 36 chr15 73958959 73959015 -11736739 + MLT2A1 LTR ERVL 390 443 -1 215 233 50 0 chr15 73959190 73959250 -11736504 + CT-rich Low_complexity Low_complexity 2 64 0 255 204 0 0 chr15 73959365 73959419 -11736335 + CT-rich Low_complexity Low_complexity 2 55 0 543 157 185 0 chr15 73959958 73960066 -11735688 + FLAM_C SINE Alu 11 138 -5 279 384 18 0 chr15 73960169 73960281 -11735473 + L2 LINE L2 3197 3310 -3 186 43 0 0 chr15 73960789 73960812 -11734942 + (T)n Simple_repeat Simple_repeat 1 23 0 261 209 0 0 chr15 73961985 73962052 -11733702 + (ATG)n Simple_repeat Simple_repeat 3 69 0 216 0 0 0 chr15 73963074 73963098 -11732656 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr15 73968443 73968480 -11727274 + AT_rich Low_complexity Low_complexity 1 37 0 459 203 8 78 chr15 73969206 73969334 -11726420 + Tigger1 DNA MER2_type 2 120 -2298 8750 123 24 34 chr15 73969337 73970861 -11724893 + Tigger1 DNA MER2_type 910 2418 0 1731 168 49 96 chr15 73970867 73971397 -11724357 - MLT1D LTR MaLR 0 505 1 234 331 99 8 chr15 73972109 73972230 -11723524 + L2 LINE L2 2715 2846 -468 799 159 0 8 chr15 73972366 73972498 -11723256 - FLAM_C SINE Alu 0 133 3 442 223 174 0 chr15 73972757 73972878 -11722876 - MIR SINE MIR -72 190 49 566 261 105 85 chr15 73973580 73973903 -11721851 - L1ME3A LINE L1 -199 6365 6025 796 204 74 0 chr15 73973903 73974079 -11721675 + MER5A DNA MER1_type 1 189 0 566 261 105 85 chr15 73974079 73974299 -11721455 - L1ME3A LINE L1 -539 6025 5811 262 256 88 7 chr15 73974472 73974609 -11721145 - L1ME3A LINE L1 -944 5596 5449 241 189 0 19 chr15 73975060 73975113 -11720641 + A-rich Low_complexity Low_complexity 2 53 0 458 316 110 7 chr15 73975200 73975472 -11720282 + L1M4 LINE L1 3299 3598 -2548 235 298 71 28 chr15 73975479 73975625 -11720129 - L1ME3A LINE L1 -4848 1873 1735 411 38 0 0 chr15 73975625 73975678 -11720076 + (GA)n Simple_repeat Simple_repeat 2 54 0 235 298 71 28 chr15 73975678 73975813 -11719941 - L1ME3A LINE L1 -4986 1735 1580 324 329 108 0 chr15 73975918 73976085 -11719669 - L1ME3A LINE L1 -5081 1459 1275 1857 150 127 18 chr15 73976802 73977188 -11718566 - MSTA LTR MaLR 0 428 1 643 273 82 50 chr15 73977646 73978309 -11717445 - L1ME LINE L1 -863 1627 949 2531 291 146 37 chr15 73978446 73979898 -11715856 + L2 LINE L2 1249 2542 -771 459 0 0 0 chr15 73979898 73979949 -11715805 + (CA)n Simple_repeat Simple_repeat 1 51 0 1959 124 0 60 chr15 73979954 73980285 -11715469 + AluSx SINE Alu 1 311 -1 2531 291 146 37 chr15 73980285 73980622 -11715132 + L2 LINE L2 2545 3247 -66 27 0 0 0 chr15 73981169 73981196 -11714558 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr15 73981872 73981897 -11713857 + AT_rich Low_complexity Low_complexity 1 25 0 2594 236 90 44 chr15 73982973 73983598 -11712156 - L1ME LINE L1 -347 5802 5207 1358 187 88 32 chr15 73983598 73983882 -11711872 - AluJo SINE Alu -12 300 1 2594 236 90 44 chr15 73983882 73984354 -11711400 - L1ME LINE L1 -942 5207 4758 2109 127 6 16 chr15 73984354 73984669 -11711085 - AluSx SINE Alu 0 312 1 2594 236 90 44 chr15 73984669 73985117 -11710637 - L1ME LINE L1 -1391 4758 4185 2783 19 0 0 chr15 73985124 73985435 -11710319 - AluYa5 SINE Alu 0 311 1 478 276 123 51 chr15 73985437 73985832 -11709922 - L1ME LINE L1 -5491 628 195 22 0 0 0 chr15 73986283 73986305 -11709449 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr15 73986660 73986683 -11709071 + (A)n Simple_repeat Simple_repeat 1 23 0 273 279 155 32 chr15 73987011 73987327 -11708427 + L1M4 LINE L1 4487 4841 -1305 344 289 94 55 chr15 73987933 73988168 -11707586 + L1M4 LINE L1 3714 3957 -2189 426 340 96 21 chr15 73988351 73988686 -11707068 + L1M4 LINE L1 4051 4410 -1736 294 289 9 35 chr15 73990990 73991104 -11704650 + (TATG)n Simple_repeat Simple_repeat 2 112 0 311 330 26 0 chr15 73991134 73991249 -11704505 - MIR SINE MIR -65 197 80 22 0 0 0 chr15 73992552 73992574 -11703180 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr15 73993487 73993513 -11702241 + (A)n Simple_repeat Simple_repeat 1 26 0 1885 223 70 17 chr15 73993574 73994049 -11701705 - MER21B LTR ERV1 -264 599 100 473 220 0 22 chr15 73994179 73994270 -11701484 - MER21B LTR ERV1 -774 89 1 1585 174 64 0 chr15 73996902 73997184 -11698570 - AluSx SINE Alu -12 300 1 1258 172 40 4 chr15 73997968 73998195 -11697559 + MER46A DNA MER2_type 2 236 0 1745 82 5 0 chr15 73998342 73998562 -11697192 + AluSc SINE Alu 75 295 -14 21 0 0 0 chr15 73998747 73998768 -11696986 + AT_rich Low_complexity Low_complexity 1 21 0 287 337 77 17 chr15 73998778 73998959 -11696795 - MIR SINE MIR -56 206 15 236 298 0 0 chr15 73999840 73999897 -11695857 + (CGTG)n Simple_repeat Simple_repeat 4 60 0 24 32 0 0 chr15 74000560 74000591 -11695163 + AT_rich Low_complexity Low_complexity 1 31 0 473 332 43 14 chr15 74001422 74001630 -11694124 - MIR SINE MIR -22 240 27 664 208 154 66 chr15 74004272 74004347 -11691407 - MER114 LTR ERV -159 489 422 2014 117 0 3 chr15 74004347 74004629 -11691125 - AluSx SINE Alu -31 281 1 664 208 154 66 chr15 74004629 74004941 -11690813 - MER114 LTR ERV -226 422 56 1939 113 41 3 chr15 74004941 74005232 -11690522 - AluSc SINE Alu -7 302 1 664 208 154 66 chr15 74005232 74005285 -11690469 - MER114 LTR ERV -592 56 9 304 294 24 0 chr15 74007959 74008044 -11687710 - MER94 DNA DNA -36 98 12 586 215 7 7 chr15 74008112 74008247 -11687507 - MER105 DNA DNA -26 178 44 801 267 0 27 chr15 74008284 74008471 -11687283 - MER58A DNA MER1_type -40 184 3 595 215 34 112 chr15 74009328 74009569 -11686185 - MIR SINE MIR -7 255 34 2370 91 0 0 chr15 74010685 74010992 -11684762 + AluSx SINE Alu 1 307 -5 717 289 80 13 chr15 74012185 74012410 -11683344 + MIR SINE MIR 22 261 -1 2272 274 133 23 chr15 74012717 74013729 -11682025 - L1MEd LINE L1 -1605 4524 3625 388 35 35 0 chr15 74013729 74013787 -11681967 + (TA)n Simple_repeat Simple_repeat 1 60 0 2272 274 133 23 chr15 74013787 74014761 -11680993 - L1MEd LINE L1 -2504 3625 2278 1721 141 72 16 chr15 74014761 74015080 -11680674 - MER44D DNA MER2_type 0 609 3 2272 274 133 23 chr15 74015080 74015154 -11680600 - L1MEd LINE L1 -3851 2278 2214 439 315 90 38 chr15 74015430 74015983 -11679771 - L1MEd LINE L1 -5025 1094 513 661 323 0 10 chr15 74016527 74016722 -11679032 - MIR SINE MIR -5 257 65 462 333 79 4 chr15 74017716 74017944 -11677810 - MIR SINE MIR 0 262 18 2111 116 25 0 chr15 74018150 74018435 -11677319 - AluSx SINE Alu -20 292 1 342 287 161 14 chr15 74018490 74018633 -11677121 + MIR SINE MIR 84 247 -15 1708 173 7 13 chr15 74019097 74019404 -11676350 + AluJo SINE Alu 5 309 -3 2208 113 3 0 chr15 74021603 74021914 -11673840 + AluSx SINE Alu 1 312 0 195 336 92 23 chr15 74021975 74022106 -11673648 - L3 LINE CR1 -809 768 629 414 296 40 49 chr15 74023867 74024060 -11671694 - MIR SINE MIR -53 209 21 956 86 39 0 chr15 74024084 74024212 -11671542 + AluSq/x SINE Alu 1 133 -180 580 98 20 0 chr15 74026079 74026181 -11669573 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 852 347 140 30 chr15 74031695 74032632 -11663122 - L2 LINE L2 -575 2739 1700 4264 106 8 3 chr15 74032742 74033364 -11662390 + L1PA13 LINE L1 5525 6149 -14 215 286 29 0 chr15 74033622 74033692 -11662062 - MIR SINE MIR -7 255 184 277 268 49 21 chr15 74033758 74033900 -11661854 + L1M4 LINE L1 3587 3732 -2414 12862 193 74 13 chr15 74033967 74034945 -11660809 + L1MA4A LINE L1 67 984 -5866 240 35 0 0 chr15 74034945 74034974 -11660780 + (CA)n Simple_repeat Simple_repeat 1 29 0 12862 193 74 13 chr15 74034974 74036299 -11659455 + L1MA4A LINE L1 984 2565 -4285 195 42 0 0 chr15 74036299 74036323 -11659431 + (CAT)n Simple_repeat Simple_repeat 2 25 0 12862 193 74 13 chr15 74036323 74036725 -11659029 + L1MA4A LINE L1 2565 2941 -3909 12654 176 29 45 chr15 74036871 74037970 -11657784 + L1MA4A LINE L1 2936 4050 -2955 1077 57 14 0 chr15 74037970 74038111 -11657643 + L1PA4 LINE L1 6013 6155 0 12654 176 29 45 chr15 74038111 74040024 -11655730 + L1MA4A LINE L1 4050 5901 -1104 1723 176 0 17 chr15 74040024 74040343 -11655411 + AluJb SINE Alu 1 314 0 12654 176 29 45 chr15 74040343 74041427 -11654327 + L1MA4A LINE L1 5901 7000 -5 903 211 174 34 chr15 74041466 74041850 -11653904 + L1M4 LINE L1 4482 4919 -1227 9565 83 13 14 chr15 74041853 74043161 -11652593 + HERVL-A2 LTR ERVL 4348 5654 0 1183 74 37 0 chr15 74043161 74043323 -11652431 + MLT2A2 LTR ERVL 1 168 -285 204 40 0 0 chr15 74043592 74043617 -11652137 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1335 212 0 19 chr15 74044382 74044641 -11651113 - AluJo SINE Alu -28 284 31 359 318 22 60 chr15 74045706 74045893 -11649861 + MIR SINE MIR 10 186 -65 330 26 0 0 chr15 74045946 74045985 -11649769 + (TA)n Simple_repeat Simple_repeat 2 40 0 592 215 17 51 chr15 74046064 74046222 -11649532 - L1ME3A LINE L1 -20 6150 5997 1643 212 37 6 chr15 74046222 74046576 -11649178 + MLT1A1 LTR MaLR 1 365 0 592 215 17 51 chr15 74046576 74046594 -11649160 - L1ME3A LINE L1 -173 5997 5980 868 234 0 78 chr15 74046597 74046828 -11648926 - MER20 DNA MER1_type 0 219 7 1905 148 8 57 chr15 74047219 74047590 -11648164 + THE1A LTR MaLR 1 353 -2 11568 96 4 1 chr15 74047591 74049166 -11646588 + THE1A-int LTR MaLR 1 1580 0 1758 140 47 52 chr15 74049168 74049532 -11646222 + THE1B LTR MaLR 3 364 0 890 252 108 26 chr15 74049661 74050117 -11645637 - L1MC5 LINE L1 -384 7577 7085 3038 207 36 33 chr15 74050248 74051001 -11644753 - L1MA9 LINE L1 -33 6279 5525 1013 214 23 83 chr15 74051000 74051351 -11644403 - L1MC5 LINE L1 -1015 6946 6617 * 1816 112 3 72 chr15 74051524 74051652 -11644102 + THE1B LTR MaLR 62 197 -167 1674 53 0 0 chr15 74051652 74051859 -11643895 + L1PA5 LINE L1 5948 6154 0 1816 112 3 72 chr15 74051859 74052051 -11643703 + THE1B LTR MaLR 197 360 -4 888 311 44 17 chr15 74052065 74052547 -11643207 - L1MC5 LINE L1 -2059 5749 5255 260 299 62 0 chr15 74052898 74052995 -11642759 - HAL1b LINE L1 -1001 347 245 1179 261 18 25 chr15 74053010 74053405 -11642349 - L1ME LINE L1 -505 5657 5266 602 181 160 0 chr15 74053441 74053585 -11642169 - MLT1A1 LTR MaLR -198 167 1 12963 214 51 26 chr15 74054343 74056223 -11639531 + L1MA5 LINE L1 2 1834 -5108 1725 193 17 0 chr15 74056223 74056524 -11639230 + AluJo SINE Alu 1 306 -6 12963 214 51 26 chr15 74056524 74061065 -11634689 + L1MA5 LINE L1 1834 6935 -7 1406 246 27 64 chr15 74061070 74061339 -11634415 - MLT1D LTR MaLR -34 471 194 2130 100 40 0 chr15 74061339 74061640 -11634114 - AluSq SINE Alu 0 313 1 2780 10 0 0 chr15 74061650 74061954 -11633800 - AluYa5 SINE Alu -7 304 1 1406 246 27 64 chr15 74061954 74062157 -11633597 - MLT1D LTR MaLR -320 185 6 255 278 56 0 chr15 74063765 74063837 -11631917 + MIR SINE MIR 72 147 -115 351 0 0 0 chr15 74063869 74063892 -11631862 + (CA)n Simple_repeat Simple_repeat 1 62 0 351 0 0 0 chr15 74063892 74063931 -11631823 + (CA)n Simple_repeat Simple_repeat 2 40 0 2379 145 28 3 chr15 74064170 74064786 -11630968 + L1PB4 LINE L1 5422 6144 -12 248 306 85 45 chr15 74065204 74065651 -11630103 - HAL1 LINE L1 -983 1524 1060 239 177 0 97 chr15 74066136 74066198 -11629556 + L1MA9 LINE L1 2 57 -6084 5299 182 35 39 chr15 74066291 74068065 -11627689 + L1MA9 LINE L1 4077 5851 -525 423 0 0 0 chr15 74068065 74068112 -11627642 + (CA)n Simple_repeat Simple_repeat 2 48 0 5299 182 35 39 chr15 74068112 74068635 -11627119 + L1MA9 LINE L1 5851 6374 -2 809 215 52 6 chr15 74068641 74068813 -11626941 - MIR SINE MIR -71 191 12 195 189 0 0 chr15 74071017 74071054 -11624700 - L2 LINE L2 0 3272 3236 2136 172 119 33 chr15 74071652 74072199 -11623555 - LTR49 LTR ERV1 -1 594 1 2172 93 0 0 chr15 74072402 74072680 -11623074 - AluY SINE Alu -13 298 21 1971 123 13 7 chr15 74072682 74072983 -11622771 - AluSg SINE Alu -7 303 1 4103 148 26 6 chr15 74073069 74073765 -11621989 - MER50 LTR ERV1 -20 714 5 189 214 18 71 chr15 74073976 74074032 -11621722 - L2 LINE L2 0 3272 3220 2045 185 58 95 chr15 74074077 74074708 -11621046 - LTR8A LTR ERV1 0 727 130 602 182 70 42 chr15 74074755 74074898 -11620856 - LTR8 LTR ERV1 -543 148 2 313 335 106 35 chr15 74075901 74076155 -11619599 + MLT1K LTR MaLR 133 404 -184 331 253 121 46 chr15 74076369 74076543 -11619211 - L1M4 LINE L1 -763 5383 5197 248 368 13 0 chr15 74076640 74076879 -11618875 + L1M4 LINE L1 4293 4534 -1612 1892 107 7 4 chr15 74077225 74077497 -11618257 - AluSc SINE Alu -2 307 35 369 0 0 0 chr15 74077711 74077752 -11618002 + (TG)n Simple_repeat Simple_repeat 2 42 0 639 343 73 21 chr15 74077830 74078297 -11617457 + L2 LINE L2 2486 2976 -338 282 270 106 48 chr15 74078453 74078642 -11617112 + L2 LINE L2 3112 3311 -2 73 32 0 0 chr15 74079171 74079265 -11616489 + AT_rich Low_complexity Low_complexity 1 94 0 1548 229 35 17 chr15 74081085 74081491 -11614263 - MLT1C LTR MaLR 0 467 55 1215 225 58 50 chr15 74081528 74081924 -11613830 + MLT2D LTR ERVL 16 414 0 1441 203 147 13 chr15 74082160 74082648 -11613106 + Charlie1 DNA MER1_type 5 1855 -906 2026 189 140 11 chr15 74082748 74083392 -11612362 + Charlie1 DNA MER1_type 2025 2751 -10 346 342 22 33 chr15 74083444 74083628 -11612126 - L2 LINE L2 -684 2630 2449 982 235 16 92 chr15 74083647 74084073 -11611681 - MLT2C1 LTR ERVL -2 395 2 2220 215 35 20 chr15 74084078 74084801 -11610953 - ERVL LTR ERVL -5 5649 4930 903 174 0 0 chr15 74084795 74084944 -11610810 + ERVL LTR ERVL 4335 4483 -1281 * 302 293 189 27 chr15 74085039 74085261 -11610493 - L2 LINE L2 -1022 2292 2035 25 0 0 0 chr15 74085486 74085511 -11610243 + AT_rich Low_complexity Low_complexity 1 25 0 187 352 29 29 chr15 74086138 74086243 -11609511 + MIR SINE MIR 8 112 -150 793 278 54 0 chr15 74086303 74086526 -11609228 + MIR SINE MIR 17 251 -11 208 348 90 0 chr15 74086543 74086632 -11609122 - L2 LINE L2 -15 3298 3202 180 200 0 0 chr15 74086879 74086919 -11608835 + GA-rich Low_complexity Low_complexity 2 41 0 1435 196 82 33 chr15 74087121 74087488 -11608266 + MSTD LTR MaLR 3 381 -15 198 0 0 0 chr15 74087498 74087520 -11608234 + (CA)n Simple_repeat Simple_repeat 1 22 0 310 325 148 32 chr15 74087524 74087903 -11607851 - L2 LINE L2 -672 2642 2220 247 299 112 29 chr15 74088083 74088324 -11607430 - L2 LINE L2 -1402 1912 1652 265 254 0 0 chr15 74088589 74088652 -11607102 - MER5A DNA MER1_type -80 109 47 679 369 54 22 chr15 74088850 74089295 -11606459 + L2 LINE L2 2854 3312 -1 244 111 0 0 chr15 74089570 74089606 -11606148 - U2 snRNA snRNA -152 36 1 245 229 202 18 chr15 74090068 74090177 -11605577 - LTR16C LTR ERVL 0 491 363 358 297 20 0 chr15 74090418 74090519 -11605235 - LTR16C LTR ERVL -241 250 148 31 44 0 0 chr15 74090976 74091021 -11604733 + AT_rich Low_complexity Low_complexity 1 45 0 256 391 11 0 chr15 74093024 74093116 -11602638 - L2 LINE L2 -47 3225 3133 25 0 0 0 chr15 74093873 74093898 -11601856 + AT_rich Low_complexity Low_complexity 1 25 0 259 266 73 73 chr15 74094310 74094419 -11601335 - MIR3 SINE MIR -93 115 7 252 291 18 0 chr15 74094672 74094782 -11600972 + L1ME3A LINE L1 6034 6145 -25 1885 223 114 11 chr15 74095371 74095904 -11599850 + MLT1G LTR MaLR 1 588 -2 231 244 0 0 chr15 74097381 74097459 -11598295 + T-rich Low_complexity Low_complexity 1 78 0 24 32 0 0 chr15 74098482 74098513 -11597241 + AT_rich Low_complexity Low_complexity 1 31 0 470 271 21 0 chr15 74098634 74098774 -11596980 + LTR16B LTR ERVL 5 147 -317 194 273 70 47 chr15 74098854 74098953 -11596801 - MIR SINE MIR -70 192 92 396 0 0 0 chr15 74099496 74099540 -11596214 + (CA)n Simple_repeat Simple_repeat 2 45 0 348 116 0 151 chr15 74099657 74099743 -11596011 + MADE1 DNA Mariner 3 75 -5 595 350 122 26 chr15 74100346 74100772 -11594982 - L2 LINE L2 0 3272 2806 441 381 75 20 chr15 74101011 74101454 -11594300 + L1MC/D LINE L1 5299 5765 -2043 531 324 65 91 chr15 74101650 74102369 -11593385 + L2 LINE L2 2570 3271 -1 2036 109 24 7 chr15 74104155 74104449 -11591305 + AluSg SINE Alu 8 306 -4 1981 131 27 10 chr15 74104932 74105264 -11590490 + AluSx SINE Alu 1 337 0 23 0 0 0 chr15 74105495 74105518 -11590236 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 74105937 74105958 -11589796 + AT_rich Low_complexity Low_complexity 1 21 0 1958 151 45 31 chr15 74106020 74106378 -11589376 - THE1B LTR MaLR 0 364 2 1382 178 4 8 chr15 74106378 74106631 -11589123 + MLT1C LTR MaLR 215 466 -1 317 281 39 8 chr15 74106648 74106687 -11589067 + MLT1J LTR MaLR 1 37 -474 2011 137 3 23 chr15 74106687 74106987 -11588767 - AluSx SINE Alu -18 294 1 317 281 39 8 chr15 74106987 74107075 -11588679 + MLT1J LTR MaLR 37 132 -379 288 320 19 48 chr15 74107387 74107490 -11588264 - MIR SINE MIR -67 141 42 208 325 129 43 chr15 74107508 74107671 -11588083 + MER5A DNA MER1_type 7 183 -6 639 351 94 34 chr15 74107920 74108774 -11586980 + L2 LINE L2 404 1308 -2006 2013 118 0 0 chr15 74109305 74109576 -11586178 + AluSc SINE Alu 37 307 -2 340 313 43 61 chr15 74109592 74109822 -11585932 - MLT1I LTR MaLR -99 310 85 213 216 157 0 chr15 74111383 74111434 -11584320 + L2 LINE L2 3214 3272 0 546 361 58 33 chr15 74111767 74112160 -11583594 + HAL1b LINE L1 13 415 -933 236 200 43 14 chr15 74112195 74112265 -11583489 + (TA)n Simple_repeat Simple_repeat 2 73 0 333 100 0 0 chr15 74112314 74112364 -11583390 + (CA)n Simple_repeat Simple_repeat 1 50 0 180 111 0 0 chr15 74112364 74112391 -11583363 + (TA)n Simple_repeat Simple_repeat 2 28 0 363 316 172 45 chr15 74112596 74113130 -11582624 + L1MC4a LINE L1 4639 5240 -906 410 306 109 22 chr15 74113198 74113467 -11582287 + L1MC4a LINE L1 5327 5571 -2237 2573 132 39 5 chr15 74113467 74113877 -11581877 - MSTA LTR MaLR -4 424 1 410 306 109 22 chr15 74113877 74114157 -11581597 + L1MC4a LINE L1 5571 5924 -1884 788 170 69 0 chr15 74115335 74115494 -11580260 + MER58B DNA MER1_type 168 337 -4 510 271 52 26 chr15 74115701 74115761 -11579993 + MIR SINE MIR 34 91 -171 3485 133 90 39 chr15 74115761 74116453 -11579301 - LTR8A LTR ERV1 0 727 1 510 271 52 26 chr15 74116453 74116547 -11579207 + MIR SINE MIR 91 192 -70 335 287 26 0 chr15 74117885 74118000 -11577754 + GA-rich Low_complexity Low_complexity 3 120 0 1341 202 24 71 chr15 74118072 74118482 -11577272 - MLT2C1 LTR ERVL -4 393 3 1477 112 14 28 chr15 74118505 74118720 -11577034 - AluSp SINE Alu -19 294 83 201 297 226 19 chr15 74120222 74120377 -11575377 + MIR SINE MIR 7 193 -69 295 216 18 18 chr15 74124598 74124709 -11571045 + (TA)n Simple_repeat Simple_repeat 2 112 0 221 234 6 0 chr15 74124721 74124879 -11570875 + (TA)n Simple_repeat Simple_repeat 1 159 0 262 277 15 0 chr15 74125092 74125156 -11570598 - MLT2F LTR ERVL -574 89 25 846 173 0 6 chr15 74125156 74125312 -11570442 - LTR32 LTR ERVL 0 471 317 1613 190 25 6 chr15 74125369 74125685 -11570069 - LTR32 LTR ERVL -136 335 14 2492 206 78 3 chr15 74126035 74126627 -11569127 + MER73 LTR ERVL 9 644 0 392 270 16 0 chr15 74127402 74127528 -11568226 + (TCTA)n Simple_repeat Simple_repeat 1 128 0 349 311 22 22 chr15 74127704 74127839 -11567915 - MIR SINE MIR -95 167 33 332 330 11 0 chr15 74128196 74128287 -11567467 - MIR SINE MIR -84 124 33 270 0 0 0 chr15 74129484 74129514 -11566240 + (TG)n Simple_repeat Simple_repeat 2 31 0 410 296 24 0 chr15 74130352 74130521 -11565233 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 194 263 50 62 chr15 74130996 74131076 -11564678 - L2 LINE L2 0 3313 3235 274 304 11 22 chr15 74131286 74131378 -11564376 - L2 LINE L2 0 3272 3182 287 307 20 20 chr15 74132432 74132533 -11563221 - MIR SINE MIR -115 147 47 227 284 15 0 chr15 74132578 74132645 -11563109 - MER96 DNA MER1_type? -1 174 107 725 315 14 10 chr15 74132661 74132901 -11562853 + MIR SINE MIR 4 241 -21 28 0 0 0 chr15 74132909 74132937 -11562817 + AT_rich Low_complexity Low_complexity 1 28 0 231 318 0 0 chr15 74133112 74133200 -11562554 - MIR SINE MIR -14 248 161 444 314 97 31 chr15 74135860 74136086 -11559668 + MIR SINE MIR 9 249 -13 213 125 54 18 chr15 74136110 74136166 -11559588 + CT-rich Low_complexity Low_complexity 6 63 0 255 307 136 0 chr15 74136633 74136721 -11559033 - L2 LINE L2 -1 3271 3172 1015 277 121 13 chr15 74136768 74136815 -11558939 + MLT1G1 LTR MaLR 125 166 -429 1899 175 59 74 chr15 74136815 74137289 -11558465 - MLT1C LTR MaLR 0 467 1 1015 277 121 13 chr15 74137289 74137631 -11558123 + MLT1G1 LTR MaLR 166 556 -39 225 132 0 0 chr15 74138156 74138194 -11557560 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 302 236 108 70 chr15 74138549 74138706 -11557048 - L2 LINE L2 -1 3312 3150 698 293 11 0 chr15 74138932 74139113 -11556641 + MIR SINE MIR 23 205 -57 21 36 0 0 chr15 74139665 74139693 -11556061 + AT_rich Low_complexity Low_complexity 1 28 0 676 288 121 49 chr15 74140118 74140507 -11555247 - L2 LINE L2 -2 3311 2895 691 104 0 0 chr15 74141151 74141247 -11554507 - AluSg/x SINE Alu 0 310 215 446 267 9 9 chr15 74141974 74142090 -11553664 + MER5A DNA MER1_type 74 189 0 376 211 53 42 chr15 74142151 74142246 -11553508 + MER5A DNA MER1_type 9 104 -85 193 289 0 0 chr15 74142249 74142301 -11553453 - MIR SINE MIR -54 208 157 23 0 0 0 chr15 74142326 74142349 -11553405 + AT_rich Low_complexity Low_complexity 1 23 0 1332 287 62 35 chr15 74142648 74143212 -11552542 + MLT1E LTR MaLR 1 579 -14 302 206 41 0 chr15 74143314 74143387 -11552367 + MLT1F1 LTR MaLR 492 567 0 604 296 56 60 chr15 74143487 74143933 -11551821 + MLT1J2 LTR MaLR 7 450 0 22 70 0 0 chr15 74143959 74144002 -11551752 + AT_rich Low_complexity Low_complexity 1 43 0 761 145 36 141 chr15 74146176 74146225 -11549529 - MER96B DNA MER1_type? -182 235 182 1760 231 6 8 chr15 74146225 74146589 -11549165 + MLT1A1 LTR MaLR 1 363 -2 761 145 36 141 chr15 74146589 74146660 -11549094 - MER96B DNA MER1_type? -235 182 105 2101 93 0 0 chr15 74146660 74146919 -11548835 + AluSc SINE Alu 24 282 -27 761 145 36 141 chr15 74146919 74147045 -11548709 - MER96B DNA MER1_type? -312 105 14 223 211 0 19 chr15 74149223 74149275 -11546479 - L2 LINE L2 0 3313 3263 2087 210 124 4 chr15 74149377 74149867 -11545887 + MER44D DNA MER2_type 2 605 0 189 278 186 0 chr15 74150208 74150305 -11545449 + L2 LINE L2 3155 3269 -3 1543 143 0 25 chr15 74150438 74150682 -11545072 - AluSg/x SINE Alu -7 305 68 21 57 0 0 chr15 74154813 74154848 -11540906 + AT_rich Low_complexity Low_complexity 1 35 0 357 263 30 23 chr15 74155108 74155241 -11540513 + MER103 DNA DNA 10 143 -23 309 346 44 0 chr15 74156058 74156217 -11539537 + MIR3 SINE MIR 39 204 -4 195 42 0 0 chr15 74156987 74157011 -11538743 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2275 209 17 74 chr15 74158653 74159193 -11536561 - MLT2B1 LTR ERVL -10 510 2 347 335 145 13 chr15 74159486 74159713 -11536041 + MIR SINE MIR 5 261 -1 607 294 123 0 chr15 74160049 74160253 -11535501 + MIR SINE MIR 18 246 -16 28 86 0 0 chr15 74160265 74160335 -11535419 + AT_rich Low_complexity Low_complexity 1 70 0 1043 166 21 11 chr15 74160724 74160911 -11534843 + MER5A DNA MER1_type 1 189 0 260 204 11 91 chr15 74162201 74162289 -11533465 - L2 LINE L2 -211 3061 2981 255 235 139 35 chr15 74162519 74162634 -11533120 + MER117 DNA MER1_type 36 162 -35 2170 102 7 0 chr15 74163152 74163437 -11532317 - AluSx SINE Alu -25 287 1 2016 150 64 0 chr15 74163490 74163817 -11531937 + MER7A DNA MER2_type 1 346 0 618 291 141 21 chr15 74166368 74166701 -11529053 - MLT1J LTR MaLR -41 470 98 1105 248 70 114 chr15 74166818 74167422 -11528332 - MLT1G LTR MaLR 0 590 14 185 345 46 0 chr15 74167427 74167514 -11528240 - MIR SINE MIR -157 105 15 21 0 0 0 chr15 74167821 74167842 -11527912 + AT_rich Low_complexity Low_complexity 1 21 0 41 36 0 0 chr15 74168826 74168881 -11526873 + AT_rich Low_complexity Low_complexity 1 55 0 2314 110 0 0 chr15 74168942 74169250 -11526504 - AluSx SINE Alu -4 308 1 2052 120 0 3 chr15 74169898 74170210 -11525544 - AluSg SINE Alu 0 311 1 285 330 0 21 chr15 74171019 74171113 -11524641 + L2 LINE L2 2677 2768 -546 1907 138 0 11 chr15 74171334 74171617 -11524137 - AluSq SINE Alu -33 280 1 235 152 38 38 chr15 74171956 74172035 -11523719 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 1549 323 128 46 chr15 74173302 74175401 -11520353 - L2 LINE L2 -67 3246 984 804 217 34 35 chr15 74175404 74175636 -11520118 + L1ME LINE L1 5445 5639 -527 332 188 0 0 chr15 74175639 74175703 -11520051 + L1MA10 LINE L1 6257 6320 -14 641 365 58 16 chr15 74175736 74176221 -11519533 - L2 LINE L2 -2330 984 480 293 181 85 85 chr15 74176995 74177089 -11518665 + L2 LINE L2 3220 3313 0 25 0 0 0 chr15 74178823 74178848 -11516906 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 74179425 74179447 -11516307 + AT_rich Low_complexity Low_complexity 1 22 0 267 260 79 0 chr15 74180981 74181071 -11514683 - L1MA8 LINE L1 -12 6279 6197 254 288 79 79 chr15 74182171 74182386 -11513368 + L2 LINE L2 2971 3185 -87 342 0 0 0 chr15 74182569 74182607 -11513147 + (CA)n Simple_repeat Simple_repeat 2 39 0 471 298 106 0 chr15 74185097 74185248 -11510506 + MIR3 SINE MIR 42 208 0 1684 106 124 15 chr15 74186229 74186502 -11509252 + AluSg SINE Alu 1 303 -7 670 318 54 0 chr15 74186688 74186911 -11508843 + MIR SINE MIR 28 262 0 1894 142 0 7 chr15 74186967 74187273 -11508481 + AluSx SINE Alu 3 306 0 267 328 35 23 chr15 74187756 74187927 -11507827 + L1P LINE L1 3485 3657 -2489 403 346 59 33 chr15 74188000 74188272 -11507482 + L1M4 LINE L1 3798 4076 -2070 34 24 0 0 chr15 74188306 74188347 -11507407 + AT_rich Low_complexity Low_complexity 1 41 0 1902 136 17 86 chr15 74188543 74188904 -11506850 - MER1B DNA MER1_type 0 337 2 21 0 0 0 chr15 74189126 74189147 -11506607 + AT_rich Low_complexity Low_complexity 1 21 0 1555 206 107 35 chr15 74189301 74189856 -11505898 + L1MB8 LINE L1 5569 6178 0 282 331 15 15 chr15 74190380 74190510 -11505244 + MIR SINE MIR 19 148 -114 382 290 114 5 chr15 74190810 74191003 -11504751 + L1ME LINE L1 5558 5771 -350 589 274 80 87 chr15 74191057 74191469 -11504285 + L2 LINE L2 2344 2752 -562 424 251 45 78 chr15 74191748 74191927 -11503827 + L1MEd LINE L1 978 1150 -4969 224 180 79 34 chr15 74192076 74192165 -11503589 + (GGGTG)n Simple_repeat Simple_repeat 4 96 0 202 243 75 65 chr15 74192337 74192444 -11503310 - L2 LINE L2 -189 3083 2976 194 263 50 62 chr15 74192652 74192732 -11503022 - L2 LINE L2 0 3313 3235 274 304 11 22 chr15 74192942 74193034 -11502720 - L2 LINE L2 0 3272 3182 314 284 20 10 chr15 74193451 74193553 -11502201 + L2 LINE L2 3155 3257 -15 194 279 7 0 chr15 74193612 74193748 -11502006 + (TGG)n Simple_repeat Simple_repeat 2 138 0 450 219 0 0 chr15 74193763 74193914 -11501840 + (TGG)n Simple_repeat Simple_repeat 2 152 0 342 176 0 0 chr15 74193935 74194020 -11501734 + (TGG)n Simple_repeat Simple_repeat 3 87 0 230 259 16 27 chr15 74194559 74194819 -11500935 + C-rich Low_complexity Low_complexity 1 257 0 630 176 24 114 chr15 74195063 74195273 -11500481 - MER1B DNA MER1_type -105 192 2 21 0 0 0 chr15 74195495 74195516 -11500238 + AT_rich Low_complexity Low_complexity 1 21 0 1555 206 107 35 chr15 74195670 74196225 -11499529 + L1MB8 LINE L1 5569 6178 0 399 21 0 0 chr15 74196753 74196801 -11498953 + (TG)n Simple_repeat Simple_repeat 2 49 0 250 391 11 0 chr15 74198851 74198943 -11496811 - L2 LINE L2 -47 3225 3133 25 0 0 0 chr15 74199699 74199724 -11496030 + AT_rich Low_complexity Low_complexity 1 25 0 255 266 73 73 chr15 74200031 74200140 -11495614 - MIR3 SINE MIR -93 115 7 291 291 18 0 chr15 74200393 74200503 -11495251 + L1ME3A LINE L1 6034 6145 -25 325 222 15 15 chr15 74201059 74201194 -11494560 + C-rich Low_complexity Low_complexity 6 140 0 188 114 29 43 chr15 74201209 74201279 -11494475 + C-rich Low_complexity Low_complexity 6 74 0 290 139 39 62 chr15 74201281 74201410 -11494344 + (CCCA)n Simple_repeat Simple_repeat 3 128 0 797 325 86 42 chr15 74201925 74202926 -11492828 + L1M4 LINE L1 3419 4463 -1683 599 78 11 0 chr15 74202955 74203045 -11492709 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 394 271 132 36 chr15 74203045 74203326 -11492428 + L1M4 LINE L1 4514 4821 -1325 850 270 74 41 chr15 74204137 74204557 -11491197 + MLT1C LTR MaLR 9 458 -9 331 240 105 109 chr15 74204983 74205212 -11490542 + L2 LINE L2 2222 2449 -865 324 0 0 0 chr15 74205249 74205285 -11490469 + (TG)n Simple_repeat Simple_repeat 1 36 0 2251 77 14 0 chr15 74205285 74205563 -11490191 - AluSq SINE Alu -28 285 1 498 46 0 0 chr15 74205743 74205808 -11489946 + (CTATT)n Simple_repeat Simple_repeat 1 65 0 287 212 35 24 chr15 74205808 74205893 -11489861 + MER112 DNA MER1_type 165 250 -10 2319 95 3 3 chr15 74206302 74206606 -11489148 + AluSc SINE Alu 1 304 -5 1053 224 127 62 chr15 74207020 74207259 -11488495 - Charlie2a DNA MER1_type -3 2859 2637 1825 122 89 0 chr15 74207259 74207530 -11488224 - AluSg SINE Alu -15 295 1 1053 224 127 62 chr15 74207530 74208269 -11487485 - Charlie2a DNA MER1_type -225 2637 683 5710 54 3 16 chr15 74208272 74209018 -11486736 + LTR17 LTR ERV1 1 780 0 242 162 29 59 chr15 74209023 74209091 -11486663 - Charlie2a DNA MER1_type -2184 678 613 420 310 145 51 chr15 74209263 74209357 -11486397 - Charlie2a DNA MER1_type -2394 388 304 791 129 15 15 chr15 74209357 74209489 -11486265 + FLAM_C SINE Alu 2 133 0 420 310 145 51 chr15 74209489 74209726 -11486028 - Charlie2a DNA MER1_type -2478 304 26 238 331 41 25 chr15 74210449 74210570 -11485184 - MIR SINE MIR -62 146 24 328 330 6 23 chr15 74212366 74212539 -11483215 + CT-rich Low_complexity Low_complexity 5 174 0 220 321 9 18 chr15 74212644 74212756 -11482998 + G-rich Low_complexity Low_complexity 1 111 0 2032 174 24 0 chr15 74213100 74213440 -11482314 - MER6 DNA MER2_type -517 348 1 5227 152 62 12 chr15 74213440 74214390 -11481364 + Tigger3b DNA MER2_type 234 1231 0 231 188 0 0 chr15 74214913 74214961 -11480793 + (TTA)n Simple_repeat Simple_repeat 2 49 0 447 176 51 0 chr15 74215164 74215319 -11480435 - L1ME4a LINE L1 -196 5925 5757 491 302 87 42 chr15 74215345 74215633 -11480121 - Tigger8 DNA MER2_type -355 311 11 29 70 0 0 chr15 74215869 74215926 -11479828 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr15 74215997 74216018 -11479736 + AT_rich Low_complexity Low_complexity 1 21 0 361 44 0 0 chr15 74216018 74216063 -11479691 - L1PA3 LINE L1 -3 6152 6108 25 31 0 0 chr15 74216178 74216210 -11479544 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 74216351 74216379 -11479375 + AT_rich Low_complexity Low_complexity 1 28 0 180 313 0 71 chr15 74217520 74217619 -11478135 - L2 LINE L2 -337 2976 2885 261 0 0 0 chr15 74217991 74218020 -11477734 + (T)n Simple_repeat Simple_repeat 1 29 0 291 338 62 28 chr15 74218250 74218395 -11477359 - MIR3 SINE MIR -50 158 9 336 306 104 0 chr15 74218821 74218955 -11476799 + L2 LINE L2 3161 3308 -5 2044 128 3 7 chr15 74219091 74219388 -11476366 - AluSg SINE Alu -12 298 3 2363 67 3 3 chr15 74219749 74220047 -11475707 - AluY SINE Alu -13 298 1 2163 120 10 0 chr15 74220047 74220356 -11475398 - AluSx SINE Alu 0 312 1 591 236 7 10 chr15 74224428 74224729 -11471025 + (CCA)n Simple_repeat Simple_repeat 1 299 0 314 284 20 10 chr15 74224730 74224832 -11470922 - L2 LINE L2 -15 3257 3155 189 0 0 0 chr15 74225308 74225329 -11470425 + (GA)n Simple_repeat Simple_repeat 2 22 0 288 296 170 7 chr15 74225579 74225714 -11470040 - MIR3 SINE MIR -36 172 16 2129 121 0 31 chr15 74226010 74226332 -11469422 + AluSx SINE Alu 1 312 0 21 0 0 0 chr15 74228558 74228579 -11467175 + AT_rich Low_complexity Low_complexity 1 21 0 238 233 0 27 chr15 74228778 74228851 -11466903 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1309 108 0 3 chr15 74230400 74230641 -11465113 + AluY SINE Alu 2 304 -7 324 320 52 29 chr15 74232490 74232662 -11463092 - MIR SINE MIR -3 259 84 310 316 129 29 chr15 74232893 74233102 -11462652 + MIR SINE MIR 33 262 0 214 304 0 43 chr15 74234230 74234322 -11461432 + L2 LINE L2 3159 3246 -67 300 303 99 28 chr15 74234700 74234842 -11460912 - L2 LINE L2 0 3272 3121 649 293 126 46 chr15 74234861 74235379 -11460375 - L2 LINE L2 -416 2898 2340 876 167 149 6 chr15 74235414 74235582 -11460172 + AluJo SINE Alu 1 192 -120 290 188 21 52 chr15 74235679 74235775 -11459979 + L1ME4a LINE L1 6026 6118 -3 245 146 36 18 chr15 74236940 74236995 -11458759 + CT-rich Low_complexity Low_complexity 4 59 0 265 230 0 81 chr15 74238194 74238268 -11457486 + L2 LINE L2 3246 3313 0 212 355 50 33 chr15 74238480 74238601 -11457153 - L2 LINE L2 -10 3262 3140 291 339 35 40 chr15 74238936 74239163 -11456591 - L2 LINE L2 -484 2830 2605 2343 112 0 0 chr15 74239714 74240027 -11455727 + AluSq SINE Alu 1 313 0 467 271 32 53 chr15 74240401 74240589 -11455165 - MIR SINE MIR -45 217 34 846 238 50 20 chr15 74241117 74241319 -11454435 - MER58A DNA MER1_type -10 214 7 264 361 0 100 chr15 74241410 74241590 -11454164 - L2 LINE L2 -99 3173 3012 302 294 59 13 chr15 74241595 74241748 -11454006 - MER117 DNA MER1_type -35 162 3 1564 165 53 7 chr15 74242087 74242372 -11453382 + AluJb SINE Alu 2 299 -13 2386 80 0 13 chr15 74242372 74242684 -11453070 + AluY SINE Alu 1 308 -3 200 83 0 28 chr15 74242701 74242737 -11453017 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1759 163 33 3 chr15 74243960 74244260 -11451494 - AluSx SINE Alu -3 309 1 358 328 53 16 chr15 74244529 74244718 -11451036 + MIR SINE MIR 63 258 -4 207 0 0 0 chr15 74245228 74245251 -11450503 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 2199 116 3 0 chr15 74245696 74245997 -11449757 - AluSq SINE Alu -11 302 1 1973 103 94 53 chr15 74246477 74246837 -11448917 + THE1C LTR MaLR 1 375 0 2254 103 0 3 chr15 74247105 74247405 -11448349 - AluSq SINE Alu -14 299 1 422 145 16 0 chr15 74247721 74247783 -11447971 + AluSp/q SINE Alu 183 245 -68 444 334 50 34 chr15 74248184 74248504 -11447250 + MLT1I LTR MaLR 85 409 0 199 320 13 27 chr15 74248527 74248602 -11447152 + MIR SINE MIR 29 102 -106 2491 123 47 5 chr15 74249380 74249762 -11445992 + MSTA LTR MaLR 31 428 0 262 283 0 0 chr15 74250328 74250388 -11445366 - L2 LINE L2 -5 3308 3249 410 276 70 32 chr15 74250622 74250807 -11444947 - L2 LINE L2 0 3313 3122 286 280 126 49 chr15 74250925 74251068 -11444686 - L2 LINE L2 0 3313 3160 307 346 105 13 chr15 74252672 74252900 -11442854 + MIR SINE MIR 14 262 0 21 43 0 22 chr15 74253424 74253435 -11442319 + AT_rich Low_complexity Low_complexity 1 11 -34 2250 93 14 3 chr15 74253435 74253726 -11442028 + AluSp SINE Alu 1 294 -19 21 43 0 22 chr15 74253726 74253760 -11441994 + AT_rich Low_complexity Low_complexity 11 45 0 209 267 0 11 chr15 74253802 74253892 -11441862 + (TA)n Simple_repeat Simple_repeat 1 89 0 201 290 14 29 chr15 74254834 74254903 -11440851 + L2 LINE L2 3233 3300 -13 23 33 0 0 chr15 74255468 74255498 -11440256 + AT_rich Low_complexity Low_complexity 1 30 0 313 238 172 25 chr15 74257022 74257144 -11438610 + MIR3 SINE MIR 9 148 -60 254 277 9 54 chr15 74259730 74259842 -11435912 + L2 LINE L2 3207 3313 0 525 189 28 9 chr15 74262184 74262290 -11433464 + MIR SINE MIR 155 262 0 681 315 25 25 chr15 74262475 74262608 -11433146 - MIR SINE MIR -7 255 120 2341 127 127 16 chr15 74262608 74262993 -11432761 + MSTA LTR MaLR 1 428 0 681 315 25 25 chr15 74262993 74263100 -11432654 - MIR SINE MIR -141 121 15 1836 182 19 38 chr15 74263537 74263905 -11431849 + MLT1A1 LTR MaLR 5 365 0 322 299 192 18 chr15 74264743 74264910 -11430844 - MIR3 SINE MIR -11 197 2 2111 125 0 0 chr15 74264919 74265240 -11430514 - AluSg SINE Alu 0 310 1 216 353 64 45 chr15 74266986 74267076 -11428678 - MIR SINE MIR -78 184 88 1755 132 16 0 chr15 74267076 74267333 -11428421 + AluSx SINE Alu 35 295 -17 216 353 64 45 chr15 74267333 74267398 -11428356 - MIR SINE MIR -174 88 26 1826 153 24 0 chr15 74267608 74267902 -11427852 - AluJo SINE Alu -3 309 9 366 355 0 7 chr15 74267955 74268107 -11427647 + MIR SINE MIR 8 158 -104 1589 144 27 1 chr15 74268107 74268547 -11427207 + LTR54 LTR ERV1 1 510 0 348 310 50 0 chr15 74268547 74268647 -11427107 + MIR SINE MIR 155 259 -3 691 328 54 40 chr15 74268746 74269097 -11426657 + L3 LINE CR1 863 1218 -359 285 385 48 35 chr15 74269101 74269332 -11426422 + L3 LINE CR1 1343 1576 -1 1762 118 0 8 chr15 74269349 74269622 -11426132 + AluSx SINE Alu 42 312 0 398 318 36 49 chr15 74271502 74271725 -11424029 + MIR SINE MIR 36 255 -7 971 291 101 24 chr15 74272231 74272730 -11423024 - L2 LINE L2 0 3313 2783 857 243 11 11 chr15 74273124 74273313 -11422441 - MER5A DNA MER1_type 0 189 1 436 327 55 14 chr15 74273332 74273552 -11422202 + MIR SINE MIR 13 241 -21 439 352 75 0 chr15 74274101 74274300 -11421454 - MIR SINE MIR -29 233 20 376 193 14 138 chr15 74274535 74274680 -11421074 + L2 LINE L2 3187 3313 0 248 319 21 0 chr15 74276127 74276221 -11419533 + MIR SINE MIR 124 219 -43 219 333 49 29 chr15 74276337 74276439 -11419315 - MER91C DNA MER1_type 0 140 37 282 300 100 0 chr15 74277194 74277274 -11418480 - L2 LINE L2 0 3272 3185 2750 215 88 30 chr15 74278064 74278554 -11417200 - L1ME1 LINE L1 -61 6105 5549 2299 101 3 3 chr15 74278554 74278860 -11416894 - AluSp SINE Alu -7 306 1 2750 215 88 30 chr15 74278860 74279212 -11416542 - L1ME1 LINE L1 -617 5549 5219 357 283 47 9 chr15 74279329 74279435 -11416319 + L2 LINE L2 3202 3311 -2 1284 221 62 39 chr15 74279907 74280264 -11415490 + MLT1A2 LTR MaLR 10 374 0 211 273 116 52 chr15 74280348 74280520 -11415234 + MIR SINE MIR 46 228 -34 347 323 32 0 chr15 74280834 74280958 -11414796 - MIR SINE MIR -66 196 69 314 367 100 36 chr15 74282112 74282641 -11413113 - MLT1K LTR MaLR -21 567 5 2141 107 0 28 chr15 74282827 74283144 -11412610 + AluY SINE Alu 3 310 -1 271 371 43 14 chr15 74283391 74283531 -11412223 + MIR3 SINE MIR 42 185 -23 234 391 0 0 chr15 74283723 74283815 -11411939 + MIR SINE MIR 48 139 -69 201 39 0 0 chr15 74284552 74284578 -11411176 + (CA)n Simple_repeat Simple_repeat 2 27 0 285 316 61 0 chr15 74286210 74286324 -11409430 + MLT1J1 LTR MaLR 47 167 -279 1823 156 14 0 chr15 74286427 74286715 -11409039 - AluJo SINE Alu -15 297 6 417 260 147 34 chr15 74286943 74287147 -11408607 + MLT1J2 LTR MaLR 171 397 -53 2313 93 7 10 chr15 74287467 74287768 -11407986 + AluSx SINE Alu 1 300 -12 1681 60 56 9 chr15 74289687 74289903 -11405851 + AluYa5 SINE Alu 1 226 -85 303 323 8 31 chr15 74289928 74290055 -11405699 + L2 LINE L2 3156 3279 -34 1057 128 20 0 chr15 74290478 74290627 -11405127 - L1PA10 LINE L1 -2 6166 6015 316 264 33 0 chr15 74290639 74290730 -11405024 + MIR SINE MIR 73 166 -96 260 174 0 0 chr15 74290845 74290891 -11404863 - L1MC4 LINE L1 -1339 6703 6658 317 234 13 0 chr15 74291728 74291805 -11403949 + MER103 DNA DNA 12 89 -77 516 258 79 60 chr15 74292860 74293112 -11402642 + MIR SINE MIR 4 260 -2 616 35 35 0 chr15 74294120 74294206 -11401548 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 312 137 0 0 chr15 74294223 74294274 -11401480 + (TCCG)n Simple_repeat Simple_repeat 3 53 0 2121 140 7 0 chr15 74295492 74295792 -11399962 + AluSg SINE Alu 1 302 -8 345 316 15 45 chr15 74296576 74296709 -11399045 - MIR SINE MIR -87 175 47 293 280 126 35 chr15 74296907 74297050 -11398704 - MIR SINE MIR -70 192 37 1835 98 4 0 chr15 74297365 74297611 -11398143 - AluY SINE Alu -64 247 1 21 57 0 0 chr15 74297642 74297677 -11398077 + AT_rich Low_complexity Low_complexity 1 35 0 677 287 55 14 chr15 74297836 74298111 -11397643 - L1MC4a LINE L1 -1947 5861 5576 258 284 48 74 chr15 74298112 74298383 -11397371 - L1MC4a LINE L1 -2290 5518 5255 255 343 94 15 chr15 74298481 74298637 -11397117 - MIR SINE MIR -37 171 2 313 342 128 8 chr15 74298891 74299134 -11396620 + L2 LINE L2 3001 3272 0 664 157 0 1 chr15 74299197 74299312 -11396442 - LTR12 LTR ERV1 0 714 480 263 233 14 0 chr15 74299312 74299385 -11396369 - LTR30 LTR ERV1 -80 642 569 1413 109 106 47 chr15 74299389 74299645 -11396109 - LTR12 LTR ERV1 -443 271 1 1877 131 13 26 chr15 74299699 74300005 -11395749 - AluSg SINE Alu -8 302 1 238 247 212 12 chr15 74300124 74300209 -11395545 + MIR SINE MIR 20 121 -87 23 54 0 0 chr15 74300382 74300419 -11395335 + AT_rich Low_complexity Low_complexity 1 37 0 30 45 0 0 chr15 74300439 74300483 -11395271 + AT_rich Low_complexity Low_complexity 1 44 0 240 368 7 15 chr15 74300543 74300679 -11395075 + MER5A DNA MER1_type 55 189 0 782 153 7 0 chr15 74302021 74302165 -11393589 + GA-rich Low_complexity Low_complexity 4 148 0 231 36 0 0 chr15 74303797 74303825 -11391929 + (CA)n Simple_repeat Simple_repeat 1 28 0 213 291 97 10 chr15 74303827 74303930 -11391824 - MIR SINE MIR -101 161 50 1814 164 13 82 chr15 74305941 74306172 -11389582 - MLT1A1 LTR MaLR -3 362 167 2224 126 0 0 chr15 74306172 74306473 -11389281 - AluSx SINE Alu -11 301 1 1814 164 13 82 chr15 74306473 74306630 -11389124 - MLT1A1 LTR MaLR -198 167 1 2936 82 92 5 chr15 74307902 74308314 -11387440 + LTR7 LTR ERV1 1 448 -2 20666 100 9 18 chr15 74308316 74311328 -11384426 + HERVH LTR ERV1 1 2987 -4726 914 142 20 0 chr15 74311322 74311470 -11384284 + HERVH LTR ERV1 3140 3290 -4423 * 3572 86 6 6 chr15 74311460 74311962 -11383792 + HERVH LTR ERV1 3492 3993 -3720 4549 133 3 1 chr15 74311964 74312625 -11383129 + HERVH LTR ERV1 4488 5149 -2564 1410 94 42 9 chr15 74312626 74312839 -11382915 + HERVH LTR ERV1 5600 5819 -1894 * 2343 101 56 13 chr15 74312837 74313213 -11382541 + HERVH LTR ERV1 7322 7713 0 2708 89 111 5 chr15 74313213 74313618 -11382136 + LTR7 LTR ERV1 1 448 -2 9655 86 7 32 chr15 74313619 74315043 -11380711 + HERVH LTR ERV1 1608 2995 -4718 5904 103 6 2 chr15 74315022 74315873 -11379881 + HERVH LTR ERV1 3140 3993 -3720 * 4243 149 9 1 chr15 74315875 74316532 -11379222 + HERVH LTR ERV1 4488 5149 -2564 1430 130 19 0 chr15 74316533 74316749 -11379005 + HERVH LTR ERV1 5600 5819 -1894 2219 114 70 14 chr15 74316749 74317118 -11378636 + HERVH LTR ERV1 7324 7713 0 2888 82 97 10 chr15 74317118 74317530 -11378224 + LTR7 LTR ERV1 1 448 -2 350 341 71 16 chr15 74318418 74318600 -11377154 + MIR3 SINE MIR 8 199 -9 324 231 83 77 chr15 74319066 74319235 -11376519 - MIR SINE MIR -21 241 72 301 188 134 89 chr15 74319258 74319370 -11376384 - L2 LINE L2 0 3313 3197 530 219 123 32 chr15 74319442 74319629 -11376125 + MER63A DNA MER1_type 1 204 -6 349 294 152 16 chr15 74319713 74319897 -11375857 - MIR SINE MIR -1 261 53 859 95 0 0 chr15 74320264 74320369 -11375385 + L1PA7 LINE L1 6039 6143 -11 201 174 0 22 chr15 74320926 74320972 -11374782 + T-rich Low_complexity Low_complexity 2 46 0 221 289 0 106 chr15 74321245 74321349 -11374405 - MIR SINE MIR -53 209 117 2740 106 17 0 chr15 74321373 74321731 -11374023 + THE1B LTR MaLR 1 364 0 428 308 175 0 chr15 74323005 74323216 -11372538 - MIR SINE MIR -1 261 14 1867 145 35 0 chr15 74323224 74323506 -11372248 - AluSx SINE Alu -18 294 3 437 299 74 96 chr15 74323768 74324284 -11371470 - L2 LINE L2 -57 3215 2713 1846 155 7 26 chr15 74324352 74324656 -11371098 + AluSx SINE Alu 1 298 -14 213 39 0 0 chr15 74324663 74324689 -11371065 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 * 1246 62 11 6 chr15 74324688 74324865 -11370889 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 203 322 52 17 chr15 74324898 74325013 -11370741 - L2 LINE L2 -1159 2155 2037 297 185 0 0 chr15 74328020 74328085 -11367669 + (CA)n Simple_repeat Simple_repeat 2 66 0 213 338 131 31 chr15 74328184 74328344 -11367410 + MIR SINE MIR 25 200 -62 1775 166 25 94 chr15 74328397 74328801 -11366953 - MLT1B LTR MaLR -14 376 1 3491 162 29 5 chr15 74329627 74330218 -11365536 + MER6A DNA MER2_type 1 605 0 222 220 0 0 chr15 74330934 74330993 -11364761 + (TG)n Simple_repeat Simple_repeat 2 60 0 220 327 151 31 chr15 74335689 74335848 -11359906 - L2 LINE L2 -171 3142 2965 373 248 26 60 chr15 74335923 74336040 -11359714 + L2 LINE L2 3200 3312 -1 352 321 91 36 chr15 74336030 74336195 -11359559 - L2 LINE L2 -445 2869 2696 * 808 246 63 102 chr15 74336234 74336644 -11359110 + LTR16A1 LTR ERVL 62 455 -2 21 0 0 0 chr15 74336861 74336882 -11358872 + AT_rich Low_complexity Low_complexity 1 21 0 2358 94 0 0 chr15 74337089 74337386 -11358368 - AluSg SINE Alu -13 297 1 349 300 61 56 chr15 74339018 74339363 -11356391 + L1ME3A LINE L1 905 1271 -4881 3299 267 89 30 chr15 74339562 74339950 -11355804 + L1ME3A LINE L1 3030 3394 -2735 252 0 0 0 chr15 74339950 74339978 -11355776 + (TA)n Simple_repeat Simple_repeat 1 28 0 3299 267 89 30 chr15 74339978 74341587 -11354167 + L1ME3A LINE L1 3394 5145 -984 1507 279 81 7 chr15 74341590 74342295 -11353459 + L1ME3A LINE L1 5334 6124 -23 253 42 21 42 chr15 74343746 74343794 -11351960 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 406 318 72 42 chr15 74344178 74344582 -11351172 + L2 LINE L2 2835 3253 -19 22 0 0 0 chr15 74344593 74344615 -11351139 + AT_rich Low_complexity Low_complexity 1 22 0 640 147 37 6 chr15 74345306 74345469 -11350285 + CT-rich Low_complexity Low_complexity 3 170 0 387 41 0 0 chr15 74345590 74345639 -11350115 + (CA)n Simple_repeat Simple_repeat 2 50 0 2397 164 24 5 chr15 74345682 74346102 -11349652 - MSTA LTR MaLR 0 428 1 571 305 40 26 chr15 74346258 74346484 -11349270 + MIR SINE MIR 34 262 0 364 318 114 45 chr15 74346604 74346849 -11348905 + MIR SINE MIR 1 262 0 193 322 68 45 chr15 74347607 74347784 -11347970 - L2 LINE L2 -527 2787 2607 284 288 72 8 chr15 74351658 74351783 -11343971 + L1MC4 LINE L1 6853 6985 -1057 319 221 16 147 chr15 74352374 74352632 -11343122 - L1ME3A LINE L1 -220 5933 5710 213 121 0 0 chr15 74352661 74352694 -11343060 + (TA)n Simple_repeat Simple_repeat 2 34 0 236 140 0 0 chr15 74352776 74352826 -11342928 - LTR66 LTR ERVL -167 443 394 201 195 0 0 chr15 74352833 74352874 -11342880 + (TATG)n Simple_repeat Simple_repeat 4 44 0 338 267 47 0 chr15 74352878 74352964 -11342790 + L1MC4 LINE L1 6614 6703 -1339 432 181 0 0 chr15 74352967 74353050 -11342704 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 585 276 68 44 chr15 74353053 74353393 -11342361 - L1ME3A LINE L1 -471 5674 5327 261 0 0 0 chr15 74353442 74353471 -11342283 + (TG)n Simple_repeat Simple_repeat 2 30 0 355 343 41 0 chr15 74353477 74353623 -11342131 - L1ME3A LINE L1 -937 5192 5041 785 149 0 30 chr15 74353635 74353769 -11341985 + AluJb SINE Alu 4 133 -179 3994 213 47 13 chr15 74353958 74355142 -11340612 + L1MB7 LINE L1 4930 6165 -19 659 299 98 34 chr15 74355301 74355896 -11339858 - L1ME3A LINE L1 -1499 4630 3998 636 277 105 4 chr15 74356114 74356352 -11339402 + MIR SINE MIR 1 262 0 2254 117 0 0 chr15 74356440 74356747 -11339007 + AluSx SINE Alu 1 307 -5 262 217 104 17 chr15 74356828 74356943 -11338811 - L1ME3A LINE L1 -2687 3442 3318 295 360 0 12 chr15 74356980 74357144 -11338610 - L1ME3A LINE L1 -3376 2753 2592 298 288 121 5 chr15 74357328 74357358 -11338396 - L1ME3A LINE L1 -3794 2335 2310 2107 104 45 0 chr15 74357358 74357646 -11338108 - AluSx SINE Alu -11 301 1 298 288 121 5 chr15 74357646 74357830 -11337924 - L1ME3A LINE L1 -3819 2310 2096 438 286 59 27 chr15 74358293 74358742 -11337012 - L1MEd LINE L1 -4850 1460 958 399 270 43 84 chr15 74358760 74359178 -11336576 - L1MEd LINE L1 -5119 1000 600 234 105 0 0 chr15 74359183 74359221 -11336533 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 25 31 0 0 chr15 74359432 74359464 -11336290 + AT_rich Low_complexity Low_complexity 1 32 0 1901 181 129 5 chr15 74359720 74360130 -11335624 - LOR1b LTR ERV1 0 461 1 23 0 0 0 chr15 74360165 74360188 -11335566 + AT_rich Low_complexity Low_complexity 1 23 0 2198 136 0 3 chr15 74360337 74360645 -11335109 - AluSg SINE Alu -3 307 1 2029 167 77 15 chr15 74361872 74362273 -11333481 - MSTB LTR MaLR 0 426 1 229 274 155 0 chr15 74362936 74363020 -11332734 - MIR SINE MIR -113 149 53 920 166 31 135 chr15 74363413 74363549 -11332205 + L1MC3 LINE L1 6813 6899 -886 1966 139 0 4 chr15 74363549 74363830 -11331924 + AluSq SINE Alu 6 285 -28 920 166 31 135 chr15 74363830 74364012 -11331742 + L1MC3 LINE L1 6899 7098 -687 240 281 18 61 chr15 74364015 74364129 -11331625 + MLT1F1 LTR MaLR 39 147 -420 1780 163 94 131 chr15 74364129 74364220 -11331534 + L1MC3 LINE L1 7213 7306 -479 1801 121 11 18 chr15 74364220 74364493 -11331261 + AluSx SINE Alu 1 271 -41 1780 163 94 131 chr15 74364493 74364622 -11331132 + L1MC3 LINE L1 7306 7438 -347 6056 101 73 0 chr15 74364622 74365543 -11330211 - L1PA13 LINE L1 0 6163 5227 1780 163 94 131 chr15 74365543 74365915 -11329839 + L1MC3 LINE L1 7438 7784 -1 253 247 11 11 chr15 74366541 74366634 -11329120 + GA-rich Low_complexity Low_complexity 4 96 0 245 164 0 18 chr15 74367050 74367105 -11328649 + CT-rich Low_complexity Low_complexity 1 54 0 1220 88 0 0 chr15 74367961 74368120 -11327634 + AluY SINE Alu 143 301 -10 1367 192 92 15 chr15 74368403 74368674 -11327080 + AluJo SINE Alu 3 294 -8 1997 108 70 0 chr15 74368779 74369065 -11326689 + AluSx SINE Alu 1 306 -6 318 289 11 0 chr15 74370558 74370648 -11325106 + MIR SINE MIR 138 228 -34 2747 29 0 0 chr15 74370648 74370959 -11324795 + AluY SINE Alu 1 311 0 782 172 7 14 chr15 74370959 74371104 -11324650 + AluJo SINE Alu 126 269 -43 209 161 0 0 chr15 74371111 74371142 -11324612 + polypurine Low_complexity Low_complexity 4 34 0 699 166 11 28 chr15 74371142 74371323 -11324431 + GA-rich Low_complexity Low_complexity 1 178 0 1291 243 19 22 chr15 74371693 74372059 -11323695 + MLT1A1 LTR MaLR 1 365 0 2048 121 7 0 chr15 74372159 74372484 -11323270 + AluSx SINE Alu 1 327 0 249 109 22 22 chr15 74373650 74373696 -11322058 - L1MC4a LINE L1 -1167 6641 6596 207 220 69 5 chr15 74373723 74373814 -11321940 + (TA)n Simple_repeat Simple_repeat 1 85 -457 1727 187 7 3 chr15 74373814 74374103 -11321651 + AluJo SINE Alu 1 290 -22 207 220 69 5 chr15 74374103 74374233 -11321521 + (TA)n Simple_repeat Simple_repeat 85 542 0 526 268 16 48 chr15 74374233 74374483 -11321271 - L1MC4 LINE L1 -1341 6701 6460 211 271 19 47 chr15 74374640 74374747 -11321007 + GA-rich Low_complexity Low_complexity 4 107 0 499 225 152 26 chr15 74374755 74374776 -11320978 - MER5C DNA MER1_type -76 248 231 2408 84 0 0 chr15 74374776 74375073 -11320681 + AluY SINE Alu 1 297 -14 499 225 152 26 chr15 74375073 74375242 -11320512 - MER5C DNA MER1_type -93 231 34 411 332 101 27 chr15 74375669 74376415 -11319339 - L1M4 LINE L1 -854 5292 4492 24 53 0 0 chr15 74376549 74376587 -11319167 + AT_rich Low_complexity Low_complexity 1 38 0 2341 94 0 0 chr15 74377641 74377948 -11317806 - AluY SINE Alu -4 307 1 318 206 0 0 chr15 74378084 74378152 -11317602 + GA-rich Low_complexity Low_complexity 5 72 0 251 268 122 0 chr15 74378223 74378305 -11317449 - MLT1H LTR MaLR -3 546 455 305 270 144 18 chr15 74378354 74378465 -11317289 - MLT1H LTR MaLR -188 361 237 815 11 0 0 chr15 74378500 74378593 -11317161 - AluSc SINE Alu -4 305 213 1505 176 56 7 chr15 74379909 74380193 -11315561 + AluJb SINE Alu 1 298 -14 938 298 138 29 chr15 74381159 74381602 -11314152 - LTR33 LTR ERVL -29 492 2 2051 96 0 4 chr15 74381821 74382093 -11313661 - AluSx SINE Alu -41 271 1 208 311 38 47 chr15 74382261 74382367 -11313387 + MIR SINE MIR 23 127 -81 3276 263 38 21 chr15 74582703 74584109 -11111645 - L1P LINE L1 -2563 3583 2154 1604 173 56 18 chr15 74584429 74584949 -11110805 - L1M4 LINE L1 -698 5463 4913 807 157 0 30 chr15 74585138 74585272 -11110482 - AluJb SINE Alu -179 133 4 356 343 41 0 chr15 74585284 74585430 -11110324 + L1ME LINE L1 5058 5209 -937 261 0 0 0 chr15 74585436 74585465 -11110289 + (CA)n Simple_repeat Simple_repeat 2 30 0 485 272 71 46 chr15 74585514 74585838 -11109916 + L1ME LINE L1 5344 5675 -487 520 299 98 34 chr15 74586149 74586744 -11109010 - L1M4 LINE L1 -1499 4630 3998 626 277 105 4 chr15 74586962 74587200 -11108554 + MIR SINE MIR 1 262 0 2281 117 0 0 chr15 74587288 74587595 -11108159 + AluSx SINE Alu 1 307 -5 238 217 104 17 chr15 74587676 74587791 -11107963 - L1M4 LINE L1 -2687 3442 3318 256 360 0 12 chr15 74587828 74587992 -11107762 - L1M4 LINE L1 -3376 2753 2592 2129 104 45 0 chr15 74588206 74588494 -11107260 - AluSx SINE Alu -11 301 1 256 287 66 6 chr15 74588511 74588678 -11107076 - L1M4 LINE L1 -3857 2272 2096 375 288 59 27 chr15 74589141 74589590 -11106164 - L1MEd LINE L1 -4850 1460 958 355 318 114 45 chr15 74590510 74590755 -11104999 - MIR SINE MIR 0 262 1 569 305 40 26 chr15 74590875 74591101 -11104653 - MIR SINE MIR 0 262 34 2400 164 24 5 chr15 74591257 74591677 -11104077 + MSTA LTR MaLR 1 428 0 387 41 0 0 chr15 74591720 74591769 -11103985 + (TG)n Simple_repeat Simple_repeat 2 50 0 640 147 37 6 chr15 74591890 74592053 -11103701 + GA-rich Low_complexity Low_complexity 3 170 0 288 298 58 40 chr15 74592629 74592904 -11102850 - L1MEd LINE L1 -5240 879 600 234 105 0 0 chr15 74592909 74592947 -11102807 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 25 31 0 0 chr15 74593158 74593190 -11102564 + AT_rich Low_complexity Low_complexity 1 32 0 1883 181 129 5 chr15 74593446 74593856 -11101898 - LOR1b LTR ERV1 0 461 1 23 0 0 0 chr15 74593891 74593914 -11101840 + AT_rich Low_complexity Low_complexity 1 23 0 2242 136 0 3 chr15 74594063 74594371 -11101383 - AluSg SINE Alu -3 307 1 2028 167 77 15 chr15 74595598 74595999 -11099755 - MSTB LTR MaLR 0 426 1 213 121 0 0 chr15 74596570 74596603 -11099151 + (TA)n Simple_repeat Simple_repeat 2 34 0 292 264 28 0 chr15 74596632 74596738 -11099016 + L1M4 LINE L1 5727 5835 -339 257 273 55 9 chr15 74597481 74597591 -11098163 - L1MC4 LINE L1 -1057 6985 6871 2499 127 24 14 chr15 74601912 74602336 -11093418 + MSTA LTR MaLR 1 428 0 209 318 23 11 chr15 74602430 74602518 -11093236 + L3 LINE CR1 914 1002 -575 302 319 189 11 chr15 74602585 74602776 -11092978 - MIR SINE MIR -29 233 9 500 331 71 8 chr15 74602801 74603067 -11092687 + L3 LINE CR1 1096 1378 -199 199 362 105 0 chr15 74603158 74603263 -11092491 + L3 LINE CR1 1445 1560 -17 1130 248 68 99 chr15 74604332 74605042 -11090712 + MER21B LTR ERV1 27 714 -149 555 319 20 0 chr15 74605113 74605317 -11090437 + MIR SINE MIR 9 216 -46 1686 208 15 74 chr15 74605318 74605793 -11089961 - LTR8 LTR ERV1 -1 690 244 1002 134 0 38 chr15 74605793 74605950 -11089804 - AluJb SINE Alu -6 306 156 927 181 10 49 chr15 74605950 74606155 -11089599 - LTR8 LTR ERV1 -494 197 1 1001 266 36 7 chr15 74607382 74608205 -11087549 - L1ME1 LINE L1 -6 6160 5188 5142 133 44 11 chr15 74608215 74609345 -11086409 - L1PA16 LINE L1 0 6166 5000 3301 256 8 97 chr15 74609345 74611111 -11084643 - L1PA15-16 LINE L1 -2852 3997 2389 6369 191 15 7 chr15 74611120 74612675 -11083079 - L1PA15-16 LINE L1 -5381 1468 9 23 68 0 0 chr15 74612933 74612977 -11082777 + AT_rich Low_complexity Low_complexity 1 44 0 669 230 132 4 chr15 74612992 74613227 -11082527 - L1ME1 LINE L1 -1031 5115 4851 304 282 35 10 chr15 74613240 74613442 -11082312 - L1ME1 LINE L1 -1610 4536 4330 1028 252 49 38 chr15 74613593 74614277 -11081477 + L1ME1 LINE L1 1641 2203 -4012 189 0 0 0 chr15 74614277 74614298 -11081456 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1028 252 49 38 chr15 74614298 74614360 -11081394 + L1ME1 LINE L1 2203 2263 -3952 2429 67 0 3 chr15 74614362 74614659 -11081095 + AluY SINE Alu 1 296 -15 618 48 0 0 chr15 74614659 74614743 -11081011 - L1PA5 LINE L1 -922 5224 5141 7588 31 1 0 chr15 74614751 74615649 -11080105 + L1PA5 LINE L1 5254 6152 -2 2679 256 22 13 chr15 74615649 74616710 -11079044 + L1ME1 LINE L1 2344 3413 -2802 569 221 67 57 chr15 74616709 74617116 -11078638 + L1ME1 LINE L1 5581 6144 -91 * 271 294 151 8 chr15 74617728 74617854 -11077900 + L3 LINE CR1 1429 1572 -5 245 304 13 13 chr15 74617921 74618000 -11077754 + L3 LINE CR1 1499 1577 0 207 204 0 0 chr15 74618431 74618480 -11077274 + (CA)n Simple_repeat Simple_repeat 2 50 0 459 238 136 27 chr15 74618960 74619107 -11076647 + MIR SINE MIR 66 228 -34 234 0 0 0 chr15 74619131 74619157 -11076597 + (T)n Simple_repeat Simple_repeat 1 26 0 315 302 112 75 chr15 74619376 74619859 -11075895 + L1M2a LINE L1 664 1164 -6004 661 360 32 36 chr15 74621185 74621773 -11073981 + L1PA13 LINE L1 788 1373 -6201 3105 237 54 41 chr15 74622236 74623616 -11072138 + L1PA13 LINE L1 2182 3592 -3992 1454 250 78 19 chr15 74623720 74624311 -11071443 - L1MCa LINE L1 -4858 1706 1081 853 240 65 76 chr15 74624313 74624667 -11071087 + MLT1A1 LTR MaLR 4 353 -12 2545 147 21 9 chr15 74624682 74625103 -11070651 - MSTB LTR MaLR 0 426 1 1099 278 62 26 chr15 74625104 74625604 -11070150 - L1MCa LINE L1 -4958 1087 570 1083 294 37 44 chr15 74625727 74626291 -11069463 - L1MCa LINE L1 -5485 560 1 564 259 109 27 chr15 74626313 74626606 -11069148 - L1MEc LINE L1 -2293 3922 3606 476 289 50 0 chr15 74626604 74626822 -11068932 - L1MEc LINE L1 -3461 2754 2526 * 771 245 34 68 chr15 74626945 74627018 -11068736 - L1MEc LINE L1 -4016 2380 2306 1496 218 0 16 chr15 74627018 74627325 -11068429 - AluJo SINE Alu -10 302 1 771 245 34 68 chr15 74627325 74627753 -11068001 - L1MEc LINE L1 -4090 2306 1896 2991 204 11 22 chr15 74627783 74628371 -11067383 - L1MA10 LINE L1 -44 6290 5710 2434 99 45 11 chr15 74628371 74628723 -11067031 - THE1B LTR MaLR 0 364 1 2991 204 11 22 chr15 74628723 74628865 -11066889 - L1MA10 LINE L1 -624 5710 5568 1647 145 148 40 chr15 74629072 74629295 -11066459 - MSTA LTR MaLR 0 428 231 1958 148 7 3 chr15 74629295 74629592 -11066162 - AluSg SINE Alu -12 298 1 1647 145 148 40 chr15 74629592 74629747 -11066007 - MSTA LTR MaLR -197 231 9 1342 239 28 14 chr15 74629776 74630136 -11065618 - MLT1A1 LTR MaLR 0 365 1 1800 173 18 0 chr15 74630158 74630441 -11065313 + AluJb SINE Alu 1 288 -24 310 90 51 13 chr15 74631944 74632022 -11063732 + (TG)n Simple_repeat Simple_repeat 1 81 0 1076 84 0 0 chr15 74632312 74632455 -11063299 - L1PA8 LINE L1 -14 6158 6016 2571 180 90 0 chr15 74632751 74633306 -11062448 - L1MB5 LINE L1 0 6174 5570 323 283 14 58 chr15 74633447 74633585 -11062169 + MIR SINE MIR 84 215 -47 946 303 93 21 chr15 74633934 74634363 -11061391 + L2 LINE L2 2714 3186 -127 198 103 0 0 chr15 74634363 74634392 -11061362 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 946 303 93 21 chr15 74634392 74634516 -11061238 + L2 LINE L2 3186 3300 -13 407 331 24 8 chr15 74635545 74635672 -11060082 + MIR SINE MIR 14 142 -120 254 268 37 0 chr15 74635707 74635789 -11059965 + L2 LINE L2 3004 3088 -225 572 112 45 0 chr15 74636630 74636719 -11059035 + MER21A LTR ERV1 546 638 -293 733 222 24 107 chr15 74636794 74637396 -11058358 - MER52A LTR ERV1 -311 1233 1 8011 178 56 21 chr15 74637397 74637444 -11058310 - MER52A-int LTR ERV1 -1 6934 6890 3085 78 28 11 chr15 74637444 74637881 -11057873 + MLT2A1 LTR ERVL 1 444 0 8011 178 56 21 chr15 74637881 74639957 -11055797 - MER52A-int LTR ERV1 -45 6890 2227 3185 141 86 34 chr15 74639949 74641152 -11054602 - MER52A-int LTR ERV1 -2625 3321 1976 * 749 127 47 33 chr15 74641161 74641311 -11054443 - MER52A-int LTR ERV1 -4805 1141 990 456 161 0 12 chr15 74641314 74641395 -11054359 - MER52A-int LTR ERV1 -889 3991 3912 7485 175 34 35 chr15 74641430 74643074 -11052680 - MER52A-int LTR ERV1 -5413 1792 6 443 250 0 61 chr15 74643079 74643243 -11052511 - MER52A LTR ERV1 0 1755 1602 404 175 0 97 chr15 74643312 74643415 -11052339 - MER52A LTR ERV1 -372 1383 1291 1204 247 194 23 chr15 74643482 74644086 -11051668 - LTR28 LTR ERV1 -313 707 1 1561 155 58 4 chr15 74644087 74644365 -11051389 + MER21A LTR ERV1 639 931 0 983 208 29 102 chr15 74644365 74644707 -11051047 + MLT1D-int LTR MaLR 1055 1371 0 1256 226 102 29 chr15 74644730 74645172 -11050582 + MLT1D LTR MaLR 23 496 -9 1009 275 83 54 chr15 74645228 74646544 -11049210 - L1ME LINE L1 -454 5708 4333 1526 215 0 17 chr15 74646544 74646837 -11048917 + AluJb SINE Alu 1 288 -24 1009 275 83 54 chr15 74646837 74647225 -11048529 - L1ME LINE L1 -1829 4333 3958 2047 58 29 29 chr15 74650447 74650721 -11045033 - AluY SINE Alu -3 308 35 228 294 87 11 chr15 74650919 74651011 -11044743 + L1PA15-16 LINE L1 210 308 -6541 651 285 79 9 chr15 74651688 74651916 -11043838 + MIR SINE MIR 2 245 -17 201 430 20 0 chr15 74652251 74652402 -11043352 + L2 LINE L2 2880 3033 -239 254 265 102 31 chr15 74652924 74653022 -11042732 + L2 LINE L2 3209 3313 0 1474 186 84 28 chr15 74653201 74653556 -11042198 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr15 74653671 74653692 -11042062 + AT_rich Low_complexity Low_complexity 1 21 0 381 324 16 38 chr15 74654755 74654940 -11040814 + MIR3 SINE MIR 14 194 -14 23 0 0 0 chr15 74655651 74655674 -11040080 + AT_rich Low_complexity Low_complexity 1 23 0 234 62 0 0 chr15 74655680 74655712 -11040042 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 74655873 74655895 -11039859 + AT_rich Low_complexity Low_complexity 1 22 0 365 248 50 6 chr15 74655997 74656197 -11039557 - L1MC/D LINE L1 -527 5639 5321 * 366 353 14 36 chr15 74656192 74656413 -11039341 + L1M4 LINE L1 4904 5119 -1027 272 371 24 24 chr15 74656574 74656908 -11038846 + L1MCc LINE L1 51 384 -6039 586 266 137 23 chr15 74657112 74657748 -11038006 - L1ME3 LINE L1 -221 5949 5258 514 278 111 8 chr15 74657868 74658238 -11037516 - L1ME3 LINE L1 -1712 4434 4027 1353 198 100 60 chr15 74658430 74658931 -11036823 + LTR29 LTR ERV1 1 521 -101 27 0 0 0 chr15 74658985 74659012 -11036742 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 74659423 74659444 -11036310 + AT_rich Low_complexity Low_complexity 1 21 0 582 199 20 97 chr15 74659600 74659796 -11035958 + MER20 DNA MER1_type 38 218 -1 228 274 155 0 chr15 74660574 74660658 -11035096 - MIR SINE MIR -113 149 53 2875 171 67 123 chr15 74661051 74661187 -11034567 + L1MC3 LINE L1 6813 6955 -830 1979 139 0 4 chr15 74661187 74661468 -11034286 + AluSq SINE Alu 6 285 -28 2875 171 67 123 chr15 74661468 74661858 -11033896 + L1MC3 LINE L1 6955 7365 -420 1811 121 11 18 chr15 74661858 74662131 -11033623 + AluSx SINE Alu 1 271 -41 2875 171 67 123 chr15 74662131 74662260 -11033494 + L1MC3 LINE L1 7365 7500 -285 6022 101 73 0 chr15 74662260 74663181 -11032573 - L1PA13 LINE L1 0 6163 5227 2875 171 67 123 chr15 74663181 74663553 -11032201 + L1MC3 LINE L1 7500 7784 -1 253 247 11 11 chr15 74664179 74664272 -11031482 + GA-rich Low_complexity Low_complexity 4 96 0 245 164 0 18 chr15 74664688 74664743 -11031011 + CT-rich Low_complexity Low_complexity 1 54 0 1216 88 0 0 chr15 74665599 74665758 -11029996 + AluY SINE Alu 143 301 -10 1376 192 92 15 chr15 74666041 74666312 -11029442 + AluJo SINE Alu 3 294 -8 2021 108 70 0 chr15 74666417 74666703 -11029051 + AluSx SINE Alu 1 306 -6 316 289 11 0 chr15 74668195 74668285 -11027469 + MIR SINE MIR 138 228 -34 2747 29 0 0 chr15 74668285 74668596 -11027158 + AluY SINE Alu 1 311 0 814 178 49 12 chr15 74668596 74668759 -11026995 + AluJo SINE Alu 126 294 -18 1108 110 0 11 chr15 74668762 74668944 -11026810 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 482 153 17 25 chr15 74668946 74669064 -11026690 + GA-rich Low_complexity Low_complexity 2 118 0 1249 243 19 22 chr15 74669434 74669800 -11025954 + MLT1A1 LTR MaLR 1 365 0 2059 121 7 0 chr15 74669900 74670225 -11025529 + AluSx SINE Alu 1 327 0 236 109 22 22 chr15 74671391 74671437 -11024317 - L1MC4a LINE L1 -1167 6641 6596 207 220 69 5 chr15 74671464 74671555 -11024199 + (TA)n Simple_repeat Simple_repeat 1 85 -457 1763 187 7 3 chr15 74671555 74671844 -11023910 + AluJo SINE Alu 1 290 -22 207 220 69 5 chr15 74671844 74671974 -11023780 + (TA)n Simple_repeat Simple_repeat 85 542 0 462 268 16 48 chr15 74671974 74672224 -11023530 - L1MC4 LINE L1 -1341 6701 6460 211 271 19 47 chr15 74672381 74672488 -11023266 + GA-rich Low_complexity Low_complexity 4 107 0 2423 84 0 16 chr15 74672517 74672828 -11022926 + AluY SINE Alu 1 306 -5 493 252 0 16 chr15 74672856 74672983 -11022771 - MER5C DNA MER1_type -166 158 34 262 294 22 0 chr15 74673410 74673502 -11022252 - L1M4 LINE L1 -854 5292 5199 302 320 35 24 chr15 74673816 74674157 -11021597 - L1M4 LINE L1 -1310 4836 4492 24 53 0 0 chr15 74674291 74674329 -11021425 + AT_rich Low_complexity Low_complexity 1 38 0 2360 94 0 0 chr15 74675383 74675690 -11020064 - AluY SINE Alu -4 307 1 318 206 0 0 chr15 74675826 74675894 -11019860 + GA-rich Low_complexity Low_complexity 5 72 0 228 268 122 0 chr15 74675965 74676047 -11019707 - MLT1H LTR MaLR -3 546 455 272 304 38 0 chr15 74676128 74676207 -11019547 - MLT1H LTR MaLR -231 318 237 822 11 0 0 chr15 74676242 74676335 -11019419 - AluSc SINE Alu -4 305 213 1529 185 54 7 chr15 74677651 74677949 -11017805 + AluJb SINE Alu 1 312 0 804 299 156 10 chr15 74678952 74679344 -11016410 - LTR33 LTR ERVL -71 450 2 2048 96 0 4 chr15 74679563 74679835 -11015919 - AluSx SINE Alu -41 271 1 212 311 38 47 chr15 74680003 74680109 -11015645 + MIR SINE MIR 23 127 -81 1631 186 4 4 chr15 74680984 74681258 -11014496 + AluJb SINE Alu 7 280 -32 261 0 0 0 chr15 74681259 74681288 -11014466 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 609 248 119 42 chr15 74681888 74682199 -11013555 + L2 LINE L2 2176 2510 -804 2178 124 23 0 chr15 74682210 74682516 -11013238 - AluSq SINE Alu 0 313 1 273 259 54 0 chr15 74682562 74682674 -11013080 - L1ME2 LINE L1 -173 5991 5874 932 152 17 143 chr15 74682684 74682915 -11012839 - AluJo SINE Alu -26 286 85 1701 227 127 2 chr15 74682921 74683560 -11012194 - L1ME2 LINE L1 -302 5864 5159 258 227 0 0 chr15 74683562 74683637 -11012117 + CT-rich Low_complexity Low_complexity 2 76 0 789 400 19 44 chr15 74683696 74684268 -11011486 - L1M4 LINE L1 -1963 4183 3626 422 261 79 22 chr15 74684293 74684643 -11011111 - L1ME LINE L1 -481 5640 5267 1303 250 198 59 chr15 74684903 74685751 -11010003 + MER52A LTR ERV1 668 1755 0 380 176 29 0 chr15 74686164 74686232 -11009522 + MSTA LTR MaLR 3 72 -356 * 866 150 0 0 chr15 74686231 74686364 -11009390 + MSTB LTR MaLR 294 426 0 4358 118 44 55 chr15 74686440 74687234 -11008520 + LTR1 LTR ERV1 1 785 0 268 331 42 54 chr15 74687253 74687419 -11008335 + MIR SINE MIR 28 191 -71 482 233 0 31 chr15 74688665 74688794 -11006960 - MER58C DNA MER1_type 0 215 91 529 283 114 33 chr15 74688913 74689394 -11006360 - L1ME3A LINE L1 -333 5837 5318 987 215 88 60 chr15 74689403 74689911 -11005843 + MER39 LTR ERV1 1 628 -23 353 322 62 19 chr15 74689938 74690149 -11005605 - L1ME3A LINE L1 -838 5308 5089 2049 112 17 0 chr15 74690632 74690919 -11004835 - AluSg SINE Alu -18 292 1 242 229 28 138 chr15 74691093 74691202 -11004552 - MIR SINE MIR -66 196 100 2035 117 0 7 chr15 74691349 74691639 -11004115 + AluSx SINE Alu 1 288 -24 27 29 0 0 chr15 74691966 74692000 -11003754 + AT_rich Low_complexity Low_complexity 1 34 0 2638 133 14 31 chr15 74692052 74692608 -11003146 - LTR12 LTR ERV1 -226 2212 1 1515 163 3 63 chr15 74692608 74692908 -11002846 + AluJo SINE Alu 31 312 0 185 207 0 17 chr15 74694918 74694976 -11000778 + (TA)n Simple_repeat Simple_repeat 2 58 0 1762 158 11 11 chr15 74695042 74695355 -11000399 + AluSx SINE Alu 1 313 0 2127 210 60 21 chr15 74695549 74696123 -10999631 + LTR28 LTR ERV1 1 1239 -443 345 188 0 14 chr15 74696172 74696241 -10999513 + LTR28 LTR ERV1 953 1020 0 2153 123 0 10 chr15 74697283 74697585 -10998169 + AluSx SINE Alu 1 299 -13 535 262 66 16 chr15 74698020 74698203 -10997551 - MIR SINE MIR -51 211 20 21 36 0 0 chr15 74698212 74698240 -10997514 + AT_rich Low_complexity Low_complexity 1 28 0 927 199 107 59 chr15 74698433 74698825 -10996929 - LTR37A LTR ERV1 0 426 16 31 99 0 0 chr15 74699847 74699948 -10995806 + GC_rich Low_complexity Low_complexity 1 101 0 21 36 0 0 chr15 74700099 74700127 -10995627 + GC_rich Low_complexity Low_complexity 1 28 0 593 282 63 0 chr15 74700508 74700714 -10995040 - MIR SINE MIR -26 236 18 2110 116 3 10 chr15 74701515 74701817 -10993937 + AluSx SINE Alu 1 300 -12 227 240 0 0 chr15 74701871 74701921 -10993833 - L2 LINE L2 -2 3311 3262 1021 135 45 0 chr15 74701921 74702077 -10993677 - AluSg/x SINE Alu -9 303 141 244 352 19 0 chr15 74702194 74702299 -10993455 + L2 LINE L2 2311 2417 -897 1354 137 68 28 chr15 74702320 74702569 -10993185 - THE1B LTR MaLR -105 259 1 277 411 29 0 chr15 74702729 74702975 -10992779 - L2 LINE L2 -2494 820 568 346 114 0 43 chr15 74703168 74703238 -10992516 - L1PA16 LINE L1 -3 6163 6097 * 1425 126 53 31 chr15 74703208 74703463 -10992291 - L1PA16 LINE L1 -44 6087 5828 2277 100 7 3 chr15 74703463 74703764 -10991990 - AluY SINE Alu -9 302 1 1425 126 53 31 chr15 74703764 74703794 -10991960 - L1PA16 LINE L1 -303 5828 5800 1100 272 88 26 chr15 74704052 74704699 -10991055 - L1ME LINE L1 -1955 4125 3439 1812 234 33 49 chr15 74704721 74705273 -10990481 + MER77 LTR ERV1 53 595 -10 2312 250 56 60 chr15 74705292 74706578 -10989176 - L1ME LINE L1 -2672 3408 2128 1362 273 38 11 chr15 74706607 74707131 -10988623 - L1ME LINE L1 -5254 816 279 240 167 0 0 chr15 74707731 74707773 -10987981 + 5S rRNA rRNA 1 42 -79 2382 83 0 13 chr15 74710201 74710513 -10985241 - AluSc SINE Alu -1 308 1 428 171 25 2 chr15 74710551 74710644 -10985110 - MER63 DNA MER1_type -85 751 657 252 0 0 0 chr15 74712589 74712617 -10983137 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1757 171 135 26 chr15 74712968 74713354 -10982400 - MSTA LTR MaLR 0 428 1 1421 234 24 9 chr15 74713678 74714016 -10981738 - MER77 LTR ERV1 -40 565 223 602 202 47 94 chr15 74714087 74714320 -10981434 - MER77 LTR ERV1 -379 226 5 2004 137 45 3 chr15 74717021 74717313 -10978441 - AluSx SINE Alu -8 304 1 266 150 0 33 chr15 74718776 74718836 -10976918 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1661 213 0 3 chr15 74719098 74719389 -10976365 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr15 74719389 74719411 -10976343 + AT_rich Low_complexity Low_complexity 1 22 0 230 319 167 0 chr15 74719679 74719817 -10975937 - MIR SINE MIR -4 258 98 2286 114 0 0 chr15 74719827 74720125 -10975629 + AluSg SINE Alu 6 303 -7 207 266 0 47 chr15 74721851 74721915 -10973839 + GA-rich Low_complexity Low_complexity 5 65 0 426 312 127 14 chr15 74723992 74724213 -10971541 + MIR SINE MIR 15 260 -2 911 192 0 0 chr15 74725410 74725561 -10970193 - AluJo SINE Alu -15 287 137 259 59 0 0 chr15 74725572 74725606 -10970148 - AluJo SINE Alu -176 126 93 1858 130 73 17 chr15 74725608 74725963 -10969791 - THE1C LTR MaLR 0 375 1 8081 134 88 19 chr15 74725965 74727440 -10968314 - THE1C-int LTR MaLR -2 1578 3 2001 141 46 27 chr15 74727442 74727810 -10967944 - THE1C LTR MaLR 0 375 1 528 204 11 0 chr15 74727810 74727903 -10967851 - AluJo SINE Alu -218 94 1 21 0 0 0 chr15 74728616 74728637 -10967117 + AT_rich Low_complexity Low_complexity 1 21 0 1843 129 45 6 chr15 74728702 74729013 -10966741 + MER7A DNA MER2_type 2 322 -24 251 138 4 39 chr15 74730295 74730352 -10965402 - MLT2A2 LTR ERVL 0 520 397 27 29 0 0 chr15 74730361 74730395 -10965359 + AT_rich Low_complexity Low_complexity 1 34 0 1822 170 38 24 chr15 74730401 74730902 -10964852 - MLT2A2 LTR ERVL -40 508 1 772 269 14 21 chr15 74730904 74731346 -10964408 - L1MEc LINE L1 -3646 2894 2493 999 147 0 0 chr15 74731350 74731507 -10964247 - AluSg/x SINE Alu 0 310 154 370 214 143 29 chr15 74731507 74731647 -10964107 - L1MEc LINE L1 -4060 2516 2325 1419 171 4 12 chr15 74731781 74732039 -10963715 - Tigger3(Golem) DNA MER2_type -2753 276 21 520 311 16 8 chr15 74732105 74732349 -10963405 - L1MEc LINE L1 -4613 2108 1863 1056 268 141 25 chr15 74732381 74732855 -10962899 + L1MCb LINE L1 1 529 -5516 26 88 0 0 chr15 74733140 74733208 -10962546 + AT_rich Low_complexity Low_complexity 1 68 0 1686 251 9 14 chr15 74733213 74733644 -10962110 - MLT2B1 LTR ERVL -91 429 1 183 161 0 0 chr15 74734096 74734127 -10961627 + MIR SINE MIR 124 154 -108 1982 154 129 0 chr15 74734158 74734561 -10961193 - L1MA8 LINE L1 -6 6285 5831 231 36 0 0 chr15 74734563 74734591 -10961163 + (TCC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr15 74734591 74734620 -10961134 + GC_rich Low_complexity Low_complexity 1 29 0 745 173 149 36 chr15 74734625 74734793 -10960961 - AluJb SINE Alu -39 273 87 488 226 28 0 chr15 74734785 74734891 -10960863 + AluJb SINE Alu 165 273 -39 * 913 124 0 27 chr15 74734891 74735076 -10960678 + (GGA)n Simple_repeat Simple_repeat 1 180 0 413 232 0 0 chr15 74735167 74735249 -10960505 - AluJb SINE Alu -228 84 3 1524 176 13 19 chr15 74735252 74735565 -10960189 - L1MA8 LINE L1 -472 5819 5509 2025 147 0 3 chr15 74736481 74736780 -10958974 - AluSx SINE Alu -14 298 1 314 220 22 0 chr15 74736811 74736902 -10958852 - L1MA10 LINE L1 -1 6333 6241 2025 259 53 28 chr15 74736945 74738270 -10957484 - L1ME1 LINE L1 -92 6143 4853 1931 125 11 4 chr15 74738270 74738570 -10957184 - AluSx SINE Alu 0 302 1 2025 259 53 28 chr15 74738570 74739448 -10956306 - L1ME1 LINE L1 -1382 4853 3827 2275 95 3 3 chr15 74739448 74739752 -10956002 - AluSg SINE Alu -4 306 3 2025 259 53 28 chr15 74739752 74739973 -10955781 - L1ME1 LINE L1 -2408 3827 3613 2612 130 2 0 chr15 74740320 74740721 -10955033 - L1PA13 LINE L1 0 6163 5762 309 154 19 0 chr15 74740740 74740792 -10954962 - L1ME1 LINE L1 -2608 3607 3555 245 271 119 17 chr15 74740798 74740975 -10954779 - L1ME1 LINE L1 -2698 3517 3323 980 156 33 28 chr15 74740977 74741189 -10954565 - L1MA7 LINE L1 0 6291 6079 335 170 35 4 chr15 74741189 74741280 -10954474 + L1MA9 LINE L1 5982 6071 -229 1398 263 66 27 chr15 74741336 74741903 -10953851 - L1ME1 LINE L1 -2920 3295 2697 1606 183 0 14 chr15 74741903 74742188 -10953566 - AluJo SINE Alu -19 293 13 1398 263 66 27 chr15 74742188 74742286 -10953468 - L1ME1 LINE L1 -3518 2697 2604 1868 292 76 28 chr15 74742294 74742394 -10953360 - L1ME1 LINE L1 -5484 912 818 2336 105 0 0 chr15 74742394 74742699 -10953055 - AluSx SINE Alu -5 307 3 1868 292 76 28 chr15 74742699 74743417 -10952337 - L1ME1 LINE L1 -5578 818 55 309 253 0 13 chr15 74743538 74743617 -10952137 - MLT1I LTR MaLR -4 405 328 494 299 127 23 chr15 74743861 74744302 -10951452 - L1ME3A LINE L1 -310 5843 5357 213 39 0 0 chr15 74744365 74744391 -10951363 + (TTC)n Simple_repeat Simple_repeat 2 27 0 302 277 63 57 chr15 74744415 74744747 -10951007 - L1ME3A LINE L1 -871 5258 4925 277 292 109 26 chr15 74745071 74745263 -10950491 - HAL1 LINE L1 -869 1638 1431 441 303 65 54 chr15 74745438 74745620 -10950134 - L1ME3A LINE L1 -4958 1161 973 2321 84 3 0 chr15 74745620 74745916 -10949838 - AluY SINE Alu -14 297 1 441 303 65 54 chr15 74745916 74746027 -10949727 - L1ME3A LINE L1 -5146 973 865 25 51 0 0 chr15 74746040 74746079 -10949675 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 74746230 74746251 -10949503 + AT_rich Low_complexity Low_complexity 1 21 0 312 296 167 38 chr15 74746431 74746617 -10949137 - L1ME3A LINE L1 -5625 494 285 672 310 120 66 chr15 74746890 74747866 -10947888 - L2 LINE L2 -5 3308 2263 344 371 104 23 chr15 74748004 74748225 -10947529 + L1ME LINE L1 5446 5684 -437 4363 267 83 22 chr15 74748492 74751384 -10944370 + L1M2c LINE L1 8 2855 -3933 886 207 28 6 chr15 74751390 74751569 -10944185 + AluJo SINE Alu 1 183 -129 655 291 78 5 chr15 74751571 74751777 -10943977 + L1MA6 LINE L1 348 568 -6221 680 168 9 0 chr15 74751794 74751901 -10943853 + AluJo SINE Alu 179 286 -26 7217 266 65 7 chr15 74751917 74754837 -10940917 + L1MA6 LINE L1 2844 5968 -974 183 42 0 0 chr15 74754837 74754861 -10940893 + (CAA)n Simple_repeat Simple_repeat 2 25 0 7217 266 65 7 chr15 74754861 74755144 -10940610 + L1MA6 LINE L1 5968 6233 -709 188 61 61 0 chr15 74755144 74755177 -10940577 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1162 217 177 0 chr15 74755355 74755723 -10940031 - L1MC4 LINE L1 -372 7670 7238 488 128 26 0 chr15 74755781 74755859 -10939895 - L1MC4 LINE L1 -1020 7022 6943 3462 159 7 34 chr15 74755860 74756349 -10939405 + L1MA6 LINE L1 6230 6694 -248 2292 77 0 0 chr15 74756349 74756660 -10939094 - AluY SINE Alu 0 311 1 3462 159 7 34 chr15 74756660 74756898 -10938856 + L1MA6 LINE L1 6694 6937 -5 313 231 116 33 chr15 74757201 74757322 -10938432 + L1ME4a LINE L1 5991 6121 0 243 228 13 63 chr15 74757759 74757838 -10937916 + MIR SINE MIR 81 155 -107 1857 112 76 4 chr15 74758105 74758382 -10937372 - AluSg SINE Alu -13 297 1 383 248 23 98 chr15 74760089 74760222 -10935532 - L2 LINE L2 0 3272 3150 23 86 0 0 chr15 74762645 74762703 -10933051 + AT_rich Low_complexity Low_complexity 1 58 0 267 103 0 0 chr15 74763201 74763240 -10932514 + (TA)n Simple_repeat Simple_repeat 1 39 0 2222 112 3 0 chr15 74764760 74765064 -10930690 + AluY SINE Alu 2 306 -5 498 192 32 24 chr15 74765193 74765318 -10930436 + MER97a DNA MER1_type? 7 132 -762 2141 115 0 3 chr15 74766590 74766885 -10928869 - AluSg SINE Alu -16 294 1 2601 58 0 0 chr15 74766891 74767199 -10928555 - AluY SINE Alu -3 308 1 349 339 82 22 chr15 74767355 74767538 -10928216 - MIR SINE MIR 0 262 69 22 56 0 0 chr15 74767616 74767652 -10928102 + AT_rich Low_complexity Low_complexity 1 36 0 1395 242 81 80 chr15 74767953 74768301 -10927453 - L1MC5 LINE L1 -434 7527 7181 2032 107 11 0 chr15 74768301 74768612 -10927142 - AluSp SINE Alu 0 314 1 1395 242 81 80 chr15 74768612 74769042 -10926712 - L1MC5 LINE L1 -780 7181 6747 1520 196 70 43 chr15 74769051 74769424 -10926330 + MLT1B LTR MaLR 1 383 -7 330 299 110 18 chr15 74769430 74769537 -10926217 - L1MC4a LINE L1 -1088 6720 6591 273 118 0 0 chr15 74769537 74769588 -10926166 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 330 299 110 18 chr15 74769588 74769644 -10926110 - L1MC4a LINE L1 -1217 6591 6542 814 149 8 15 chr15 74769734 74769868 -10925886 + FLAM_C SINE Alu 1 133 0 413 179 0 11 chr15 74770628 74770723 -10925031 + L1M4 LINE L1 5237 5330 -816 2331 88 3 0 chr15 74770725 74771030 -10924724 + AluY SINE Alu 1 306 -5 5589 167 21 17 chr15 74771039 74772460 -10923294 + L1PA15 LINE L1 4728 6144 -21 1467 181 13 7 chr15 74772476 74772775 -10922979 + L1M4 LINE L1 5296 5596 -578 183 262 48 78 chr15 74773241 74773344 -10922410 + MIR SINE MIR 54 153 -109 484 176 55 0 chr15 74773861 74773952 -10921802 + MER7A DNA MER2_type 1 94 -252 626 175 16 40 chr15 74775485 74775611 -10920143 + MER7A DNA MER2_type 224 346 0 2556 264 150 1 chr15 74776163 74776985 -10918769 + L1MD1 LINE L1 14 957 -5583 2366 135 44 0 chr15 74776988 74777543 -10918211 + L1PA11 LINE L1 5080 5653 -521 318 229 48 14 chr15 74777866 74777985 -10917769 + L1M2a LINE L1 1 1272 -5816 1406 248 3 0 chr15 74778114 74778469 -10917285 + L1M2a LINE L1 3371 3726 -3441 * 3162 188 68 6 chr15 74778456 74779105 -10916649 + L1MB3 LINE L1 5493 6181 -2 1388 200 48 14 chr15 74779362 74779657 -10916097 + AluJo SINE Alu 1 305 -7 2288 73 10 10 chr15 74780464 74780765 -10914989 + AluSg SINE Alu 1 301 -9 1396 124 70 12 chr15 74780953 74781195 -10914559 + L1PA11 LINE L1 5916 6171 -3 579 167 46 0 chr15 74781204 74781312 -10914442 + L1MD1 LINE L1 949 1061 -5479 1372 255 64 21 chr15 74781331 74781707 -10914047 + MER77 LTR ERV1 41 432 -173 1602 120 9 0 chr15 74781712 74781937 -10913817 + AluSq SINE Alu 25 251 -62 276 100 0 0 chr15 74781937 74781977 -10913777 + (A)n Simple_repeat Simple_repeat 1 40 0 625 196 59 103 chr15 74781996 74782200 -10913554 + MER77 LTR ERV1 405 599 -6 4450 219 46 67 chr15 74782207 74785034 -10910720 + L1MD1 LINE L1 1073 3911 -2629 592 228 45 86 chr15 74785051 74785319 -10910435 + L1MD1 LINE L1 4185 4441 -2099 * 1799 197 45 30 chr15 74785313 74785979 -10909775 + L1MD1 LINE L1 5192 5873 -748 209 238 40 0 chr15 74785982 74786083 -10909671 + (TA)n Simple_repeat Simple_repeat 1 105 0 2342 167 12 29 chr15 74786165 74786649 -10909105 + L1MD1 LINE L1 5874 6349 -287 909 277 34 30 chr15 74786924 74787364 -10908390 + L1MD1 LINE L1 6134 6575 -61 331 371 129 19 chr15 74787571 74787703 -10908051 + L2 LINE L2 2959 3075 -197 2154 119 6 0 chr15 74787703 74788014 -10907740 - AluSq SINE Alu 0 313 1 331 371 129 19 chr15 74788014 74788145 -10907609 + L2 LINE L2 3075 3251 -21 1722 174 120 31 chr15 74788517 74788908 -10906846 - MSTB LTR MaLR 0 426 1 335 247 24 0 chr15 74789730 74789815 -10905939 - MIR SINE MIR -5 257 171 980 297 67 22 chr15 74789845 74790249 -10905505 - LTR33 LTR ERVL -56 465 44 23 54 0 0 chr15 74790309 74790346 -10905408 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 74791285 74791309 -10904445 + AT_rich Low_complexity Low_complexity 1 24 0 275 248 53 90 chr15 74792268 74792401 -10903353 + MIR SINE MIR 76 203 -59 4194 135 100 14 chr15 74792943 74793704 -10902050 + LTR1B LTR ERV1 1 826 0 2161 117 0 0 chr15 74793891 74794212 -10901542 + AluSq SINE Alu 4 324 0 2245 108 0 16 chr15 74794257 74794572 -10901182 + AluSx SINE Alu 1 310 -2 220 133 67 0 chr15 74795126 74795171 -10900583 + A-rich Low_complexity Low_complexity 1 48 0 776 299 72 53 chr15 74795800 74796047 -10899707 + L1M4 LINE L1 2890 3131 -3015 2223 88 10 3 chr15 74796047 74796341 -10899413 + AluY SINE Alu 1 296 -15 776 299 72 53 chr15 74796341 74796581 -10899173 + L1M4 LINE L1 3131 3386 -2760 306 274 123 42 chr15 74796651 74796936 -10898818 + L1M4 LINE L1 3504 3811 -2335 2252 90 0 0 chr15 74797542 74797848 -10897906 + AluY SINE Alu 2 307 0 23 0 0 0 chr15 74798314 74798337 -10897417 + AT_rich Low_complexity Low_complexity 1 23 0 320 208 0 13 chr15 74798351 74798428 -10897326 + L1MA8 LINE L1 6106 6181 -110 336 125 47 0 chr15 74798432 74798496 -10897258 + L1MA7 LINE L1 6219 6285 -6 237 65 0 0 chr15 74798618 74798649 -10897105 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 3052 105 5 7 chr15 74798783 74799232 -10896522 + LTR7 LTR ERV1 1 448 -2 2031 119 18 0 chr15 74799788 74800073 -10895681 - AluSq SINE Alu -23 290 1 244 359 17 17 chr15 74802852 74803005 -10892749 - MIR SINE MIR -70 138 41 504 177 31 10 chr15 74803382 74803478 -10892276 + L1MB2 LINE L1 5448 5545 -626 1236 249 24 49 chr15 74803478 74803848 -10891906 + MLT1A2 LTR MaLR 1 361 -13 21 0 0 0 chr15 74804070 74804091 -10891663 + AT_rich Low_complexity Low_complexity 1 21 0 3006 192 32 2 chr15 74804136 74804735 -10891019 + L1MB2 LINE L1 5555 6171 0 186 250 117 17 chr15 74805505 74805565 -10890189 - L2 LINE L2 -817 2497 2432 324 212 0 0 chr15 74805572 74805638 -10890116 - MLT1E1 LTR MaLR 0 654 589 1412 251 84 26 chr15 74805962 74806461 -10889293 + MLT1E1 LTR MaLR 1 528 -126 373 188 14 0 chr15 74806476 74806545 -10889209 - MER45 DNA AcHobo 0 1581 1512 1903 157 7 0 chr15 74806549 74806843 -10888911 + AluSx SINE Alu 1 296 -16 838 306 23 11 chr15 74807071 74807332 -10888422 - MER45C DNA AcHobo -687 266 3 275 314 68 42 chr15 74807396 74807587 -10888167 - L2 LINE L2 -2277 1037 842 2297 94 0 0 chr15 74807795 74808092 -10887662 + AluSg1 SINE Alu 1 297 -12 450 99 14 0 chr15 74808718 74808789 -10886965 + L1PA7 LINE L1 6081 6152 -2 453 287 35 39 chr15 74811639 74811848 -10883906 + MIR SINE MIR 56 262 0 1707 152 55 10 chr15 74812503 74812792 -10882962 - AluJb SINE Alu -9 303 2 733 251 23 0 chr15 74812845 74813020 -10882734 + MIR SINE MIR 74 252 -10 869 200 44 6 chr15 74813118 74813298 -10882456 - MER2 DNA MER2_type 0 345 159 615 156 9 9 chr15 74813302 74813411 -10882343 + MER57A LTR ERV1 13 121 -282 5723 58 8 0 chr15 74813463 74814200 -10881554 - L1PA5 LINE L1 0 6154 5412 1438 189 7 25 chr15 74814200 74814486 -10881268 + MER57A LTR ERV1 123 403 0 642 221 87 0 chr15 74814486 74814635 -10881119 - MER2 DNA MER2_type -183 162 1 348 64 0 0 chr15 74814645 74814692 -10881062 + (CA)n Simple_repeat Simple_repeat 1 47 0 235 154 19 19 chr15 74816354 74816406 -10879348 - HSMAR1 DNA Mariner -1 1286 1235 357 325 49 12 chr15 74816705 74816868 -10878886 + MIR3 SINE MIR 31 199 -9 234 0 0 0 chr15 74816988 74817014 -10878740 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 583 291 47 0 chr15 74817114 74817262 -10878492 + MIR SINE MIR 14 168 -94 237 254 143 0 chr15 74817308 74817434 -10878320 + L1MC4 LINE L1 5851 5994 -1814 1085 122 0 0 chr15 74817477 74817624 -10878130 + AluSg/x SINE Alu 150 296 -16 707 259 107 101 chr15 74817624 74818111 -10877643 + L1MC4 LINE L1 6056 6539 -1349 441 0 0 0 chr15 74818111 74818160 -10877594 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 707 259 107 101 chr15 74818160 74818738 -10877016 + L1MC4 LINE L1 6539 7270 -618 1700 227 47 40 chr15 74818752 74819246 -10876508 + MLT1D LTR MaLR 1 497 -8 354 321 16 24 chr15 74819255 74819469 -10876285 + L1MC4 LINE L1 7201 7450 -393 235 229 36 24 chr15 74819532 74819615 -10876139 + L1MC4 LINE L1 7496 7579 -463 280 275 62 43 chr15 74819636 74819970 -10875784 + L1MC4 LINE L1 7531 7999 -43 1570 186 14 4 chr15 74820015 74820294 -10875460 + AluJb SINE Alu 3 284 -28 260 213 50 12 chr15 74820443 74820523 -10875231 + MIR SINE MIR 170 252 -10 339 182 0 0 chr15 74822523 74822589 -10873165 + Charlie5 DNA MER1_type 50 115 -2497 1067 70 0 0 chr15 74822664 74822792 -10872962 + AluY SINE Alu 21 148 -163 2216 116 3 0 chr15 74822895 74823206 -10872548 - AluSx SINE Alu 0 312 1 329 227 63 2 chr15 74825061 74825148 -10870606 - MIR SINE MIR -112 96 3 297 0 0 0 chr15 74825241 74825274 -10870480 + (CA)n Simple_repeat Simple_repeat 2 34 0 373 362 16 5 chr15 74826124 74826312 -10869442 + MIR3 SINE MIR 11 200 -8 303 28 0 0 chr15 74826779 74826815 -10868939 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 897 296 48 37 chr15 74827081 74827753 -10868001 - L1MEc LINE L1 -3594 2621 1969 2246 102 0 3 chr15 74828244 74828538 -10867216 + AluSq SINE Alu 1 293 -20 240 170 0 0 chr15 74829523 74829576 -10866178 + (CA)n Simple_repeat Simple_repeat 1 53 0 286 312 104 32 chr15 74830275 74830400 -10865354 - L2 LINE L2 -2 3270 3137 690 201 3 117 chr15 74831396 74831592 -10864162 + MER58A DNA MER1_type 6 182 0 2261 73 20 13 chr15 74832445 74832748 -10863006 + AluSc SINE Alu 1 305 -4 296 299 49 49 chr15 74834746 74835030 -10860724 + L1ME4a LINE L1 4687 4970 -1176 25 31 0 0 chr15 74835095 74835127 -10860627 + AT_rich Low_complexity Low_complexity 1 32 0 395 317 86 25 chr15 74835270 74835645 -10860109 + L1ME4a LINE L1 5255 5660 -2148 21 0 0 0 chr15 74836021 74836042 -10859712 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 74837289 74837311 -10858443 + AT_rich Low_complexity Low_complexity 1 22 0 359 288 155 41 chr15 74837654 74837925 -10857829 - L1MC4a LINE L1 -1945 5863 5562 954 337 61 42 chr15 74837944 74838421 -10857333 + L1M2c LINE L1 791 1281 -6285 3876 93 275 0 chr15 74838421 74839069 -10856685 - LTR12 LTR ERV1 0 826 1 954 337 61 42 chr15 74839069 74839134 -10856620 + L1M2c LINE L1 1281 1343 -6223 3850 245 28 23 chr15 74839471 74842277 -10853477 + L1M2c LINE L1 2097 4624 -2936 3046 160 22 5 chr15 74842277 74842832 -10852922 - L1PA15 LINE L1 0 6816 6253 10381 211 20 54 chr15 74843600 74845698 -10850056 - L1PA15 LINE L1 -551 6265 4097 2225 103 0 14 chr15 74845698 74846028 -10849726 - AluSq SINE Alu 0 326 1 10381 211 20 54 chr15 74846028 74846377 -10849377 - L1PA15 LINE L1 -2719 4097 3738 2346 61 55 0 chr15 74846377 74846670 -10849084 - AluY SINE Alu -2 309 1 955 140 7 0 chr15 74846670 74846813 -10848941 - AluY SINE Alu -167 144 1 10381 211 20 54 chr15 74846813 74847751 -10848003 - L1PA15 LINE L1 -3076 3740 2862 582 289 89 15 chr15 74847786 74848177 -10847577 + L1ME4a LINE L1 5642 6061 -60 2079 124 6 6 chr15 74848181 74848520 -10847234 - L1PB1 LINE L1 -5 6146 5808 3475 181 7 4 chr15 74848520 74849238 -10846516 - L1 LINE L1 -1490 4656 3937 13717 139 34 15 chr15 74849245 74849473 -10846281 - L1PBa LINE L1 -4273 2590 2368 2346 86 0 0 chr15 74849473 74849763 -10845991 + AluY SINE Alu 2 291 -20 13717 139 34 15 chr15 74849763 74852074 -10843680 - L1PBa LINE L1 -4495 2368 3 3900 231 64 19 chr15 74852080 74852465 -10843289 - L1PA15 LINE L1 -3931 2866 2500 2076 126 7 3 chr15 74852465 74852766 -10842988 + AluSc SINE Alu 1 302 -7 3900 231 64 19 chr15 74852766 74853924 -10841830 - L1PA15 LINE L1 -4297 2500 1266 2138 313 57 26 chr15 74853992 74854876 -10840878 - L1PA15 LINE L1 -5876 911 1 7993 186 61 24 chr15 74854889 74855555 -10840199 + L1MA6 LINE L1 3196 3836 -2464 207 0 0 0 chr15 74855555 74855578 -10840176 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7993 186 61 24 chr15 74855578 74856990 -10838764 + L1MA6 LINE L1 3836 5424 -876 2416 77 0 0 chr15 74856990 74857288 -10838466 + AluY SINE Alu 1 298 -13 7993 186 61 24 chr15 74857288 74858197 -10837557 + L1MA6 LINE L1 5424 6298 -2 353 297 43 22 chr15 74858227 74858459 -10837295 - L1MC/D LINE L1 -2259 5549 5313 243 304 206 0 chr15 74858603 74858705 -10837049 - MIR SINE MIR -93 169 47 2522 104 28 8 chr15 74858910 74859267 -10836487 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr15 74860539 74860568 -10835186 + AT_rich Low_complexity Low_complexity 1 29 0 302 318 45 0 chr15 74861190 74861300 -10834454 - L1ME4a LINE L1 -16 6105 5991 1588 164 7 25 chr15 74861330 74861605 -10834149 + AluJo SINE Alu 12 281 -31 276 30 0 0 chr15 74861608 74861641 -10834113 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 334 212 153 54 chr15 74861748 74861989 -10833765 - L1ME4a LINE L1 -295 5826 5562 22 35 0 0 chr15 74862033 74862062 -10833692 + AT_rich Low_complexity Low_complexity 1 29 0 281 329 57 38 chr15 74862226 74862436 -10833318 + L2 LINE L2 1221 1434 -1880 792 153 191 32 chr15 74862636 74862825 -10832929 + MER20 DNA MER1_type 1 219 0 343 224 13 13 chr15 74862841 74862917 -10832837 + MIR SINE MIR 8 83 -179 340 285 80 7 chr15 74863656 74863793 -10831961 - HAL1 LINE L1 -1399 1108 962 306 0 0 0 chr15 74863813 74863847 -10831907 + (TG)n Simple_repeat Simple_repeat 2 35 0 211 300 100 8 chr15 74863869 74863989 -10831765 + L2 LINE L2 2595 2725 -589 279 0 0 0 chr15 74864134 74864165 -10831589 + (TG)n Simple_repeat Simple_repeat 1 31 0 267 355 59 7 chr15 74864188 74864340 -10831414 + L2 LINE L2 2595 2754 -560 206 369 128 7 chr15 74864429 74864570 -10831184 + L2 LINE L2 2896 3053 -219 285 296 42 28 chr15 74865874 74866017 -10829737 + MIR SINE MIR 20 163 -76 389 198 113 0 chr15 74866170 74866276 -10829478 + L1M4 LINE L1 3638 3755 -2391 1732 189 3 3 chr15 74866602 74866898 -10828856 - AluJb SINE Alu -16 296 1 2386 79 0 0 chr15 74867197 74867489 -10828265 + AluSc SINE Alu 1 292 -17 366 23 0 0 chr15 74868278 74868321 -10827433 + (CA)n Simple_repeat Simple_repeat 2 44 0 325 312 55 0 chr15 74871182 74871291 -10824463 + L2 LINE L2 3153 3267 -5 1287 84 0 0 chr15 74872444 74872472 -10823282 + (TCCC)n Simple_repeat Simple_repeat 1 206 0 1287 84 0 0 chr15 74872472 74872650 -10823104 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 314 159 58 0 chr15 74872677 74872746 -10823008 - AluSc SINE Alu -6 293 221 1471 82 0 0 chr15 74872746 74872928 -10822826 - AluSc SINE Alu -127 182 1 723 223 42 6 chr15 74873033 74873199 -10822555 - MER20 DNA MER1_type -47 172 1 233 250 0 17 chr15 74873419 74873479 -10822275 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 292 265 45 25 chr15 74874308 74874464 -10821290 + HAL1b LINE L1 1191 1327 -21 225 261 17 9 chr15 74875497 74875612 -10820142 + (TA)n Simple_repeat Simple_repeat 1 116 0 210 311 123 16 chr15 74876272 74876394 -10819360 - L2 LINE L2 -2 3311 3177 310 258 108 32 chr15 74876414 74876507 -10819247 + MIR SINE MIR 63 162 -100 2029 123 31 0 chr15 74876628 74876920 -10818834 + AluSx SINE Alu 1 301 -11 228 67 0 0 chr15 74877608 74877638 -10818116 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 204 37 19 chr15 74877681 74877735 -10818019 + L2 LINE L2 3255 3309 -4 34 65 0 0 chr15 74877816 74877878 -10817876 + AT_rich Low_complexity Low_complexity 1 62 0 30 27 0 0 chr15 74878170 74878207 -10817547 + AT_rich Low_complexity Low_complexity 1 37 0 35 0 0 0 chr15 74880080 74880115 -10815639 + AT_rich Low_complexity Low_complexity 1 35 0 556 201 28 7 chr15 74880712 74880856 -10814898 - Charlie1 DNA MER1_type -1 2760 2614 3669 135 9 20 chr15 74880898 74881533 -10814221 - L1MA8 LINE L1 -7 6284 5657 605 232 71 0 chr15 74881577 74881732 -10814022 - Charlie1 DNA MER1_type -2565 196 31 1704 175 22 44 chr15 74881913 74882287 -10813467 + MLT1A1 LTR MaLR 1 467 0 259 331 110 7 chr15 74882287 74882423 -10813331 - MIR SINE MIR -88 174 25 449 289 58 24 chr15 74882461 74882669 -10813085 - MIR SINE MIR 0 262 48 347 141 16 0 chr15 74882671 74882735 -10813019 + CT-rich Low_complexity Low_complexity 1 65 0 2351 96 7 0 chr15 74882735 74883037 -10812717 - AluSc SINE Alu -5 304 1 21 0 0 0 chr15 74884163 74884184 -10811570 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr15 74884515 74884544 -10811210 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 261 0 0 0 chr15 74884543 74884572 -10811182 + (TC)n Simple_repeat Simple_repeat 1 29 0 1821 89 13 0 chr15 74886214 74886451 -10809303 + AluSq SINE Alu 61 300 -13 1855 109 0 125 chr15 74886575 74886960 -10808794 - MER1B DNA MER1_type 0 337 1 1373 207 46 36 chr15 74887063 74887403 -10808351 + MLT1A2 LTR MaLR 31 374 0 68 55 0 0 chr15 74887468 74887578 -10808176 + AT_rich Low_complexity Low_complexity 1 110 0 223 324 167 29 chr15 74888564 74888774 -10806980 - MIR SINE MIR 0 262 24 289 110 3 0 chr15 74890235 74890278 -10805476 + Alu SINE Alu 248 285 -15 2147 99 3 3 chr15 74890284 74890567 -10805187 + AluSc SINE Alu 1 283 -26 275 322 25 51 chr15 74890642 74890760 -10804994 - MIR SINE MIR -125 137 23 315 0 0 0 chr15 74890973 74891008 -10804746 + (CA)n Simple_repeat Simple_repeat 2 36 0 4313 215 53 139 chr15 74891346 74893624 -10802130 + L1MB7 LINE L1 14 2095 -4551 2328 98 0 0 chr15 74893750 74894045 -10801709 + AluSx SINE Alu 1 295 -17 759 231 15 5 chr15 74894174 74894207 -10801547 + L1MB7 LINE L1 3924 3955 -2689 6891 56 1 0 chr15 74894207 74895068 -10800686 + L1PA7 LINE L1 5291 6152 -2 759 231 15 5 chr15 74895068 74895253 -10800501 + L1MB7 LINE L1 3955 4143 -2501 3793 208 42 28 chr15 74895260 74897470 -10798284 + L1MB7 LINE L1 4263 6682 0 1856 91 0 0 chr15 74898221 74898453 -10797301 + AluSq SINE Alu 24 255 -58 644 262 27 16 chr15 74898628 74898815 -10796939 + MLT1C LTR MaLR 279 467 0 242 204 0 0 chr15 74898844 74898898 -10796856 - L1ME LINE L1 -373 5748 5695 318 278 0 0 chr15 74899158 74899230 -10796524 + MIR SINE MIR 77 148 -114 2356 173 50 80 chr15 74899820 74900305 -10795449 - L1MC3 LINE L1 0 7785 7322 1969 116 11 0 chr15 74900305 74900580 -10795174 + AluSx SINE Alu 1 278 -34 2356 173 50 80 chr15 74900580 74900717 -10795037 - L1MC3 LINE L1 -463 7322 7182 295 274 27 0 chr15 74900799 74900872 -10794882 - L2 LINE L2 -2 3311 3237 1146 225 5 5 chr15 74901058 74901280 -10794474 + MER58A DNA MER1_type 1 222 -2 283 342 54 18 chr15 74901459 74901570 -10794184 - L2 LINE L2 -10 3262 3148 936 176 52 73 chr15 74901578 74901908 -10793846 + MER33 DNA MER1_type 1 323 -1 934 176 5 54 chr15 74901925 74902129 -10793625 - MER3 DNA MER1_type -1 208 15 1994 141 35 46 chr15 74902129 74902427 -10793327 + THE1B LTR MaLR 1 296 -68 2301 65 0 88 chr15 74902427 74902768 -10792986 - AluY SINE Alu 0 311 1 1994 141 35 46 chr15 74902768 74902837 -10792917 + THE1B LTR MaLR 296 364 0 1425 136 49 24 chr15 74902885 74903172 -10792582 - L1MA8 LINE L1 -1 6290 5997 206 313 15 30 chr15 74903770 74903837 -10791917 + MIR SINE MIR 20 85 -177 528 295 133 5 chr15 74903847 74904057 -10791697 - MIR SINE MIR -7 255 19 290 331 18 55 chr15 74904002 74904165 -10791589 + MIR SINE MIR 20 176 -86 * 3376 134 21 4 chr15 74904291 74904806 -10790948 + MER1A DNA MER1_type 4 527 0 320 268 85 37 chr15 74904941 74905105 -10790649 - MLT1J2 LTR MaLR -228 222 51 318 241 25 89 chr15 74905500 74905658 -10790096 + MIR SINE MIR 65 212 -50 28 71 0 0 chr15 74905768 74905824 -10789930 + AT_rich Low_complexity Low_complexity 1 56 0 360 259 35 26 chr15 74905860 74905976 -10789778 + L1MA1 LINE L1 19 135 -7430 * 10287 146 106 22 chr15 74905973 74907113 -10788641 + L1MA1 LINE L1 1106 2468 -5097 1819 141 0 85 chr15 74907113 74907454 -10788300 + AluSx SINE Alu 1 312 0 10287 146 106 22 chr15 74907454 74908199 -10787555 + L1MA1 LINE L1 2468 3149 -4416 7823 148 59 7 chr15 74908184 74909944 -10785810 + L1MA1 LINE L1 5189 7111 -610 * 2635 165 7 0 chr15 74909944 74910369 -10785385 + MSTA LTR MaLR 1 428 0 7823 148 59 7 chr15 74910369 74911012 -10784742 + L1MA1 LINE L1 7111 7719 -2 312 355 29 0 chr15 74911945 74912083 -10783671 + MIR3 SINE MIR 60 201 -7 1590 236 68 72 chr15 74913508 74914050 -10781704 - MLT1F1 LTR MaLR -2 565 1 259 203 51 0 chr15 74914259 74914318 -10781436 + MIR SINE MIR 129 190 -72 363 304 78 86 chr15 74914933 74915315 -10780439 - L3 LINE CR1 -8 1569 1191 486 300 27 13 chr15 74915708 74915858 -10779896 - L2 LINE L2 -2 3311 3160 195 42 0 0 chr15 74916178 74916202 -10779552 + (A)n Simple_repeat Simple_repeat 1 24 0 306 0 0 0 chr15 74916590 74916624 -10779130 + (CA)n Simple_repeat Simple_repeat 1 34 0 34 0 0 0 chr15 74916671 74916705 -10779049 + AT_rich Low_complexity Low_complexity 1 34 0 315 289 0 11 chr15 74917549 74917639 -10778115 + L1ME4a LINE L1 3083 3171 -2975 343 340 21 0 chr15 74918164 74918352 -10777402 + L1ME4a LINE L1 3763 3954 -2192 254 24 0 0 chr15 74918492 74918533 -10777221 + AluY SINE Alu 261 301 0 21 36 0 0 chr15 74918640 74918668 -10777086 + AT_rich Low_complexity Low_complexity 1 28 0 474 323 81 34 chr15 74918669 74919112 -10776642 + L1ME4a LINE L1 4188 4651 -1495 251 269 29 19 chr15 74919214 74919318 -10776436 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 432 278 48 28 chr15 74919368 74919616 -10776138 + L1ME4a LINE L1 5612 5864 -257 261 247 35 24 chr15 74920937 74921022 -10774732 + L1ME LINE L1 5735 5820 -301 287 344 28 33 chr15 74921307 74921487 -10774267 - MIR SINE MIR -74 188 10 264 262 36 12 chr15 74922215 74922299 -10773455 + T-rich Low_complexity Low_complexity 2 87 0 291 307 42 57 chr15 74923072 74923284 -10772470 + MIR SINE MIR 51 259 -3 1149 173 136 40 chr15 74924411 74924735 -10771019 + MLT1A1 LTR MaLR 11 365 0 242 399 30 18 chr15 74925476 74925644 -10770110 - MIR SINE MIR -73 189 20 1586 116 78 4 chr15 74926018 74926260 -10769494 + AluSx SINE Alu 45 304 -8 304 360 57 25 chr15 74928365 74928682 -10767072 - L2 LINE L2 -705 2609 2283 256 353 43 36 chr15 74928755 74929033 -10766721 - L2 LINE L2 -1232 2082 1803 251 243 252 48 chr15 74930230 74930436 -10765318 - MIR SINE MIR -5 257 10 356 283 73 73 chr15 74931184 74931389 -10764365 - L1ME3A LINE L1 -5 6165 5961 526 255 115 16 chr15 74931456 74931699 -10764055 - L1ME3A LINE L1 -221 5949 5683 1843 147 75 20 chr15 74931702 74932049 -10763705 - THE1C LTR MaLR -9 366 1 736 279 52 45 chr15 74932050 74932452 -10763302 - L1ME3A LINE L1 -485 5685 5281 655 285 64 46 chr15 74932454 74933082 -10762672 - L1ME3A LINE L1 -2626 3520 2882 363 277 108 77 chr15 74934722 74935112 -10760642 + MLT1K LTR MaLR 169 570 -18 764 154 26 62 chr15 74935118 74935148 -10760606 - MER53 DNA DNA 0 189 159 1179 252 68 29 chr15 74935148 74935529 -10760225 - MSTD LTR MaLR 0 396 1 764 154 26 62 chr15 74935529 74935693 -10760061 - MER53 DNA DNA -30 159 2 24 32 0 0 chr15 74935839 74935870 -10759884 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr15 74935965 74936011 -10759743 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr15 74936253 74936274 -10759480 + AT_rich Low_complexity Low_complexity 1 21 0 249 313 25 0 chr15 74936583 74936663 -10759091 + L2 LINE L2 1261 1342 -1972 817 49 0 0 chr15 74936690 74936792 -10758962 - L1PA3 LINE L1 0 6155 6054 381 317 0 0 chr15 74936792 74936912 -10758842 + L2 LINE L2 1306 1425 -1889 1233 314 101 46 chr15 74936916 74937929 -10757825 + L2 LINE L2 2219 3313 0 231 395 13 29 chr15 74938202 74938440 -10757314 - L2 LINE L2 -665 2649 2416 2223 98 0 22 chr15 74939961 74940276 -10755478 + AluY SINE Alu 1 308 -3 588 144 76 42 chr15 74940526 74940644 -10755110 - LTR12 LTR ERV1 -234 480 359 305 211 14 0 chr15 74940644 74940715 -10755039 - LTR30 LTR ERV1 -98 624 553 1538 104 86 68 chr15 74940716 74940996 -10754758 - LTR12 LTR ERV1 -429 285 1 274 352 35 14 chr15 74941378 74941523 -10754231 + MIR SINE MIR 9 156 -106 305 269 67 37 chr15 74941604 74941738 -10754016 + L1MC5 LINE L1 7614 7751 -210 3038 193 18 3 chr15 74944208 74944820 -10750934 - L1MB5 LINE L1 -7 6167 5547 2115 92 101 24 chr15 74945414 74945752 -10750002 + THE1B LTR MaLR 1 364 0 203 361 0 34 chr15 74946219 74946338 -10749416 - L2 LINE L2 -780 2534 2420 254 87 22 0 chr15 74946602 74946648 -10749106 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 6938 48 3 32 chr15 74946648 74948076 -10747678 - L1PA5 LINE L1 -24 6130 4726 2115 122 6 19 chr15 74948773 74949085 -10746669 + AluSx SINE Alu 1 308 -4 373 232 224 0 chr15 74949115 74949240 -10746514 - MIR SINE MIR -24 238 86 387 311 160 4 chr15 74950065 74950290 -10745464 - MIR SINE MIR 0 262 3 193 151 14 41 chr15 74950852 74950925 -10744829 + (TA)n Simple_repeat Simple_repeat 1 71 0 390 269 86 16 chr15 74951082 74951268 -10744486 - L1ME LINE L1 -303 5818 5620 433 309 42 16 chr15 74954180 74954371 -10741383 - MIR SINE MIR -65 197 2 337 309 24 40 chr15 74954389 74954515 -10741239 - MLT1J LTR MaLR 0 511 388 354 309 79 53 chr15 74955629 74956047 -10739707 - L2 LINE L2 -1171 2143 1715 206 200 0 0 chr15 74956312 74956347 -10739407 + (CA)n Simple_repeat Simple_repeat 1 35 0 1743 108 20 77 chr15 74956917 74957214 -10738540 - AluSx SINE Alu -1 311 32 358 296 89 103 chr15 74957262 74957656 -10738098 - L1MEd LINE L1 -5015 1104 715 2038 132 0 7 chr15 74957656 74957959 -10737795 - AluSc SINE Alu -8 301 1 358 296 89 103 chr15 74957959 74957989 -10737765 - L1MEd LINE L1 -5404 715 686 1025 228 14 0 chr15 74958212 74958431 -10737323 - MLT1A1 LTR MaLR 0 365 144 359 179 0 60 chr15 74958466 74958533 -10737221 - AluJ/FRAM SINE Alu -14 288 226 * 446 114 0 5 chr15 74958532 74958635 -10737119 - MLT1A1 LTR MaLR -211 154 1 280 307 27 2 chr15 74958698 74958841 -10736913 + MLT1J2 LTR MaLR 7 156 -291 1875 149 3 20 chr15 74958927 74959229 -10736525 - AluSx SINE Alu -14 298 2 313 138 0 138 chr15 74959293 74959387 -10736367 + MLT1I LTR MaLR 328 408 -1 207 397 94 20 chr15 74959397 74959843 -10735911 + L2 LINE L2 2825 3303 -10 227 286 22 55 chr15 74960266 74960357 -10735397 + L2 LINE L2 3226 3313 0 480 18 0 0 chr15 74961110 74961167 -10734587 + (TG)n Simple_repeat Simple_repeat 2 58 0 180 296 56 14 chr15 74963429 74963500 -10732254 - MIR SINE MIR -10 252 179 535 280 30 0 chr15 74963532 74963664 -10732090 - MIR SINE MIR -77 185 50 2382 97 0 0 chr15 74964382 74964693 -10731061 + AluSp SINE Alu 1 311 -2 896 176 0 19 chr15 74965363 74965522 -10730232 + Tigger1 DNA MER2_type 2 157 -2261 * 1108 142 31 67 chr15 74965511 74965736 -10730018 + Tigger1 DNA MER2_type 2202 2418 0 21 0 0 0 chr15 74966012 74966033 -10729721 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 74967074 74967096 -10728658 + AT_rich Low_complexity Low_complexity 1 22 0 1557 206 0 43 chr15 74968023 74968349 -10727405 - AluJo SINE Alu 0 312 1 595 213 0 16 chr15 74968496 74968623 -10727131 - L1MC5 LINE L1 -1089 6872 6748 1066 254 26 9 chr15 74968642 74968968 -10726786 - L1MC5 LINE L1 -934 6874 6542 358 269 87 50 chr15 74969246 74969488 -10726266 + L1ME LINE L1 5572 5822 -299 1242 252 44 86 chr15 74969755 74970687 -10725067 - L1MD3 LINE L1 0 8042 7165 663 51 65 0 chr15 74970715 74970853 -10724901 + (TA)n Simple_repeat Simple_repeat 1 147 0 1292 166 25 113 chr15 74970855 74971181 -10724573 - AluYb8 SINE Alu -21 297 1 708 244 38 94 chr15 74971384 74971608 -10724146 - L1MC4 LINE L1 -956 7086 6851 2028 103 0 55 chr15 74971608 74971920 -10723834 + AluSg SINE Alu 1 295 -15 2277 57 0 4 chr15 74971925 74972238 -10723516 + AluY SINE Alu 1 312 0 708 244 38 94 chr15 74972238 74972379 -10723375 - L1MC4 LINE L1 -1195 6847 6735 278 202 30 10 chr15 74973247 74973346 -10722408 + (TA)n Simple_repeat Simple_repeat 1 101 0 245 262 41 131 chr15 74973612 74973757 -10721997 + MIR SINE MIR 76 207 -55 1184 138 0 14 chr15 74973792 74973932 -10721822 - L1MA9 LINE L1 -1 6311 6173 2166 114 3 0 chr15 74973932 74974231 -10721523 - AluSg SINE Alu -10 300 1 1184 138 0 14 chr15 74974231 74974300 -10721454 - L1MA9 LINE L1 -139 6173 6105 630 105 21 0 chr15 74975477 74975572 -10720182 - THE1B LTR MaLR 0 364 268 * 708 106 0 10 chr15 74975570 74975674 -10720080 + THE1B LTR MaLR 262 364 0 5465 171 23 39 chr15 74975677 74976216 -10719538 - L1 LINE L1 -887 5259 4713 2203 67 44 7 chr15 74976216 74976513 -10719241 - AluY SINE Alu -3 308 1 5465 171 23 39 chr15 74976513 74977169 -10718585 - L1 LINE L1 -1433 4713 4083 3274 215 31 43 chr15 74977170 74977415 -10718339 + L1MB7 LINE L1 5125 5371 -813 2362 64 7 3 chr15 74977415 74977710 -10718044 + AluSp SINE Alu 1 296 -17 3274 215 31 43 chr15 74977710 74978533 -10717221 + L1MB7 LINE L1 5371 6176 -8 321 333 147 22 chr15 74978547 74979003 -10716751 + L1M4 LINE L1 3347 3859 -2287 750 140 119 0 chr15 74979162 74979305 -10716449 - L1PA16 LINE L1 -9 6157 5998 2297 179 24 2 chr15 74979306 74979724 -10716030 + MSTA LTR MaLR 1 427 -1 8831 186 21 0 chr15 74979726 74981267 -10714487 + MSTA-int LTR MaLR 2 1575 -76 4316 221 46 6 chr15 74981258 74982100 -10713654 - L1 LINE L1 -1586 4560 3664 * 306 50 0 0 chr15 74982100 74982140 -10713614 + (TG)n Simple_repeat Simple_repeat 2 41 0 4316 221 46 6 chr15 74982140 74982371 -10713383 - L1 LINE L1 -2482 3664 3444 2826 142 13 4 chr15 74982356 74982820 -10712934 + L1PA16 LINE L1 5458 5925 -241 * 410 154 115 0 chr15 74982820 74982898 -10712856 + AluSp/q SINE Alu 217 303 0 238 374 0 0 chr15 74984207 74984290 -10711464 - L2 LINE L2 -5 3267 3185 21 57 0 0 chr15 74984327 74984362 -10711392 + AT_rich Low_complexity Low_complexity 1 35 0 231 359 48 0 chr15 74985116 74985219 -10710535 - LTR67 LTR ERVL -17 540 433 228 67 0 0 chr15 74985362 74985392 -10710362 + (CTA)n Simple_repeat Simple_repeat 3 32 0 385 329 63 0 chr15 74985474 74985617 -10710137 - MIR SINE MIR -104 158 7 180 0 0 0 chr15 74986363 74986383 -10709371 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 229 327 10 10 chr15 74987183 74987287 -10708467 + MIR SINE MIR 28 131 -77 222 191 0 24 chr15 74987367 74987409 -10708345 + polypyrimidine Low_complexity Low_complexity 3 43 0 314 238 61 164 chr15 74987887 74988101 -10707653 + MIR SINE MIR 17 208 -54 324 114 0 0 chr15 74988330 74988374 -10707380 + MER11B LTR ERVK 1 44 -1192 * 1138 75 0 0 chr15 74988373 74988519 -10707235 + MER11B LTR ERVK 1091 1236 0 23 0 0 0 chr15 74989399 74989422 -10706332 + AT_rich Low_complexity Low_complexity 1 23 0 26 93 0 0 chr15 74990126 74990201 -10705553 + AT_rich Low_complexity Low_complexity 1 75 0 526 169 56 0 chr15 74990583 74990672 -10705082 + MER58B DNA MER1_type 248 341 0 23 68 0 0 chr15 74990725 74990769 -10704985 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr15 74990813 74990841 -10704913 + AT_rich Low_complexity Low_complexity 1 28 0 469 286 50 33 chr15 74990901 74991231 -10704523 - L1 LINE L1 -2134 4012 3679 631 209 8 8 chr15 74991749 74991878 -10703876 + FLAM_A SINE Alu 1 129 -4 1787 150 59 59 chr15 74992644 74993018 -10702736 + THE1C LTR MaLR 2 375 0 9311 144 17 34 chr15 74993018 74994625 -10701129 + THE1C-int LTR MaLR 1 1580 0 1459 148 47 23 chr15 74994627 74994883 -10700871 + THE1C LTR MaLR 3 264 -111 19573 100 7 4 chr15 74994883 74997550 -10698204 + HERVL-A2 LTR ERVL 2980 5654 0 1985 191 36 28 chr15 74997550 74998099 -10697655 + MLT2A2 LTR ERVL 1 554 0 2342 138 5 19 chr15 74998200 74998569 -10697185 + THE1B LTR MaLR 1 364 0 10964 107 14 16 chr15 74998569 74998996 -10696758 + THE1B-int LTR MaLR 1 427 -1153 2077 140 0 3 chr15 74998996 74999304 -10696450 - AluSc SINE Alu 0 309 3 10964 107 14 16 chr15 74999304 75000459 -10695295 + THE1B-int LTR MaLR 427 1580 0 2153 117 47 36 chr15 75000459 75000819 -10694935 + THE1B LTR MaLR 1 364 0 254 282 103 55 chr15 75001379 75001440 -10694314 - MER5A DNA MER1_type -1 188 131 1504 198 128 6 chr15 75001440 75001793 -10693961 - MSTD LTR MaLR 0 396 1 254 282 103 55 chr15 75001793 75001895 -10693859 - MER5A DNA MER1_type -58 131 6 669 36 0 0 chr15 75003665 75003749 -10692005 + (GAA)n Simple_repeat Simple_repeat 1 84 0 342 0 0 0 chr15 75004066 75004104 -10691650 + (TG)n Simple_repeat Simple_repeat 2 39 0 203 0 37 0 chr15 75004537 75004564 -10691190 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 185 96 39 39 chr15 75004601 75004653 -10691101 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 819 246 12 59 chr15 75004985 75005241 -10690513 - MLT1E3 LTR MaLR -1 623 380 228 186 14 71 chr15 75005270 75005340 -10690414 - MLT2C2 LTR ERVL -315 149 84 * 817 221 26 26 chr15 75005287 75005482 -10690272 - MLT1E3 LTR MaLR -455 199 5 476 209 48 48 chr15 75005476 75005682 -10690072 + Zaphod DNA AcHobo 630 835 -3196 * 999 135 7 0 chr15 75006321 75006502 -10689252 + AluSg/x SINE Alu 135 316 0 1965 216 19 14 chr15 75006520 75006937 -10688817 + MSTB1 LTR MaLR 1 419 -13 245 211 40 0 chr15 75008846 75008922 -10686832 - L1ME3A LINE L1 -9 6161 6083 565 259 152 6 chr15 75008958 75009116 -10686638 + MER5A DNA MER1_type 7 187 -2 1284 267 66 53 chr15 75009116 75009737 -10686017 - L1ME3A LINE L1 -115 6055 5427 2362 193 47 28 chr15 75009765 75010346 -10685408 - L1MA8 LINE L1 -25 7226 6635 665 192 46 59 chr15 75010353 75010572 -10685182 + L1 LINE L1 5087 5302 -844 6937 60 5 0 chr15 75010590 75011543 -10684211 + L1PA7 LINE L1 5196 6152 -2 334 83 0 0 chr15 75011588 75011636 -10684118 - L1MA6 LINE L1 -339 5961 5914 9506 188 18 4 chr15 75011640 75012901 -10682853 - L1MA8 LINE L1 -1098 6008 4707 1906 120 30 37 chr15 75012901 75013201 -10682553 - AluSc SINE Alu -11 298 1 9506 188 18 4 chr15 75013201 75013954 -10681800 - L1MA8 LINE L1 -2399 4707 3966 242 220 0 0 chr15 75013957 75014007 -10681747 - L1MA8 LINE L1 -3443 3663 3614 324 161 125 0 chr15 75014029 75014085 -10681669 - AluSc SINE Alu -22 277 215 4615 247 47 37 chr15 75014110 75016876 -10678878 - L1MA8 LINE L1 -3495 3611 7 237 222 0 0 chr15 75016904 75016972 -10678782 - AluJ/monomer SINE Alu 0 306 239 507 232 25 22 chr15 75016972 75017163 -10678591 - L1MC/D LINE L1 -756 5390 5245 1467 221 62 25 chr15 75017163 75017612 -10678142 + MER31B LTR ERV1 1 466 0 507 232 25 22 chr15 75017612 75017656 -10678098 - L1MC/D LINE L1 -901 5245 5203 195 42 0 0 chr15 75018305 75018329 -10677425 + (CA)n Simple_repeat Simple_repeat 2 25 0 275 263 68 60 chr15 75018628 75018761 -10676993 - MIR SINE MIR -60 202 69 205 368 86 7 chr15 75019409 75019561 -10676193 + MIR SINE MIR 25 188 -74 542 113 0 0 chr15 75020106 75020186 -10675568 - MADE1 DNA Mariner 0 80 1 256 377 58 7 chr15 75020198 75020352 -10675402 - L3 LINE CR1 -310 1267 1106 22 56 0 0 chr15 75020692 75020728 -10675026 + AT_rich Low_complexity Low_complexity 1 36 0 207 372 26 0 chr15 75021084 75021197 -10674557 + MIR3 SINE MIR 90 205 -3 412 294 13 20 chr15 75022746 75022899 -10672855 + GA-rich Low_complexity Low_complexity 5 156 0 22 0 0 0 chr15 75023650 75023672 -10672082 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 75024067 75024092 -10671662 + AT_rich Low_complexity Low_complexity 1 25 0 727 267 74 77 chr15 75024201 75024954 -10670800 + HAL1 LINE L1 743 1493 -1014 363 121 0 0 chr15 75024954 75025012 -10670742 + (GGA)n Simple_repeat Simple_repeat 1 58 0 306 297 26 26 chr15 75025811 75025966 -10669788 + HAL1 LINE L1 2250 2404 -103 281 327 71 9 chr15 75026105 75026218 -10669536 - MIR SINE MIR -68 140 21 503 211 105 23 chr15 75026309 75026442 -10669312 - MER58B DNA MER1_type 0 341 198 1791 145 150 24 chr15 75026594 75026974 -10668780 - MSTA LTR MaLR 0 428 1 4146 147 19 12 chr15 75026974 75027647 -10668107 - MSTA-int LTR MaLR 0 1580 903 1292 130 19 5 chr15 75027633 75027841 -10667913 - MSTA-int LTR MaLR -1440 211 1 * 1712 180 138 21 chr15 75027841 75028224 -10667530 - MSTA LTR MaLR 0 428 1 252 329 0 0 chr15 75028922 75028995 -10666759 - MLT1K LTR MaLR -514 74 2 2238 122 0 0 chr15 75029804 75030115 -10665639 + AluY SINE Alu 1 311 0 192 77 0 0 chr15 75030501 75030527 -10665227 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1806 164 0 4 chr15 75030527 75030808 -10664946 - AluJo SINE Alu -32 280 1 520 249 6 11 chr15 75031655 75031832 -10663922 + GA-rich Low_complexity Low_complexity 4 179 0 252 306 90 9 chr15 75031936 75032047 -10663707 + MIR SINE MIR 24 143 -65 309 242 0 61 chr15 75033125 75033224 -10662530 - L1MC4 LINE L1 -1337 6705 6613 777 154 0 0 chr15 75033227 75033460 -10662294 + (TA)n Simple_repeat Simple_repeat 1 233 0 543 159 6 16 chr15 75033489 75033671 -10662083 + (TA)n Simple_repeat Simple_repeat 1 180 0 2009 122 0 0 chr15 75033685 75033955 -10661799 - AluSg SINE Alu -27 283 14 234 295 98 54 chr15 75034018 75034130 -10661624 - MIR SINE MIR -65 197 81 342 226 24 12 chr15 75034855 75034939 -10660815 + MIR SINE MIR 47 131 -131 494 175 19 0 chr15 75034948 75035051 -10660703 + GA-rich Low_complexity Low_complexity 2 106 0 2175 108 0 0 chr15 75035081 75035367 -10660387 + AluSc SINE Alu 1 286 -23 486 169 25 8 chr15 75035372 75035490 -10660264 + GA-rich Low_complexity Low_complexity 4 123 0 202 289 21 52 chr15 75035498 75035595 -10660159 + MIR SINE MIR 163 256 -6 1289 235 14 17 chr15 75036326 75036615 -10659139 + AluJo SINE Alu 1 288 -24 183 42 0 0 chr15 75036661 75036685 -10659069 + (TTG)n Simple_repeat Simple_repeat 3 26 0 2008 149 10 0 chr15 75036687 75036996 -10658758 - AluSx SINE Alu 0 312 1 1975 168 62 27 chr15 75037001 75037405 -10658349 - MSTA LTR MaLR -10 418 1 1295 111 35 65 chr15 75037406 75037610 -10658144 - MSTA-int LTR MaLR -1 1650 1454 2367 93 0 7 chr15 75037610 75037910 -10657844 + AluSx SINE Alu 5 302 -10 1295 111 35 65 chr15 75037910 75037966 -10657788 - MSTA-int LTR MaLR -197 1454 1398 282 104 15 30 chr15 75037991 75038058 -10657696 + (CA)n Simple_repeat Simple_repeat 1 66 0 1181 97 6 6 chr15 75038282 75038447 -10657307 + AluSp SINE Alu 140 304 -9 21 0 0 0 chr15 75038558 75038579 -10657175 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr15 75039068 75039100 -10656654 + AT_rich Low_complexity Low_complexity 1 32 0 255 282 92 46 chr15 75039357 75039552 -10656202 + L2 LINE L2 3081 3284 -29 2563 129 20 32 chr15 75039750 75040301 -10655453 - LTR12 LTR ERV1 -226 2212 1 242 128 43 0 chr15 75040453 75040500 -10655254 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 345 305 29 40 chr15 75040567 75040741 -10655013 + L1ME LINE L1 5572 5743 -378 460 254 120 72 chr15 75043432 75043464 -10652290 - L2 LINE L2 -18 3295 3266 2044 69 31 0 chr15 75043464 75043794 -10651960 - AluSq SINE Alu 0 353 16 460 254 120 72 chr15 75043794 75044051 -10651703 - L2 LINE L2 -47 3266 2991 189 292 15 46 chr15 75044110 75044175 -10651579 - MER5B DNA MER1_type -92 86 24 444 285 187 4 chr15 75044203 75044438 -10651316 - L2 LINE L2 -527 2787 2510 252 309 49 0 chr15 75044719 75044800 -10650954 + L2 LINE L2 3186 3270 -2 225 196 0 0 chr15 75044803 75044854 -10650900 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 184 329 26 0 chr15 75045521 75045597 -10650157 + MIR SINE MIR 182 259 -3 478 200 0 25 chr15 75045635 75045755 -10649999 + L1PB4 LINE L1 6040 6156 0 1099 164 6 0 chr15 75045842 75046013 -10649741 - FRAM SINE Alu -10 166 1 1811 127 39 0 chr15 75046124 75046383 -10649371 - AluSq SINE Alu -21 292 24 313 267 123 27 chr15 75046574 75046720 -10649034 - MIR SINE MIR -98 164 5 1814 199 104 8 chr15 75046737 75047210 -10648544 - L1MD1 LINE L1 0 6242 5725 * 3148 186 48 67 chr15 75047205 75048131 -10647623 - L1MDa LINE L1 -4812 1728 821 308 280 25 70 chr15 75048463 75048620 -10647134 + L2 LINE L2 3133 3282 -31 322 217 0 0 chr15 75048632 75048701 -10647053 + MER8 DNA MER2_type 170 238 -1 389 254 194 0 chr15 75048701 75048835 -10646919 - L1MDa LINE L1 -5724 816 657 1302 235 17 11 chr15 75048835 75049192 -10646562 - L1MDa LINE L1 -6146 394 36 1899 155 10 3 chr15 75049792 75050083 -10645671 - AluSx SINE Alu -7 305 13 470 243 29 0 chr15 75052952 75053055 -10642699 + MER5A DNA MER1_type 7 112 -77 1441 203 0 35 chr15 75053492 75053782 -10641972 - AluJo SINE Alu -22 290 11 28 29 0 0 chr15 75056186 75056221 -10639533 + AT_rich Low_complexity Low_complexity 1 35 0 1204 187 9 14 chr15 75056257 75056476 -10639278 - MER20 DNA MER1_type 0 219 2 39 22 0 0 chr15 75056558 75056604 -10639150 + AT_rich Low_complexity Low_complexity 1 46 0 217 255 18 0 chr15 75056705 75056772 -10638982 + MIR SINE MIR 74 141 -67 1367 166 54 29 chr15 75060832 75061152 -10634602 - AluJb SINE Alu 0 327 1 1241 198 25 11 chr15 75062649 75062932 -10632822 + L1PA16 LINE L1 5856 6142 -24 1014 77 6 13 chr15 75064842 75064998 -10630756 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 2164 112 0 0 chr15 75065001 75065279 -10630475 - AluSq SINE Alu -35 278 1 256 235 101 59 chr15 75065847 75065966 -10629788 + L2 LINE L2 2188 2311 -1003 25 0 0 0 chr15 75066835 75066860 -10628894 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr15 75067390 75067427 -10628327 + (TC)n Simple_repeat Simple_repeat 1 37 0 2245 96 0 7 chr15 75067972 75068294 -10627460 + AluSc SINE Alu 1 309 0 201 262 0 0 chr15 75068616 75068658 -10627096 + MIR SINE MIR 40 81 -181 192 250 0 0 chr15 75068741 75068785 -10626969 - L2 LINE L2 -43 3270 3227 252 59 0 0 chr15 75069439 75069473 -10626281 + (TG)n Simple_repeat Simple_repeat 2 35 0 30 0 0 0 chr15 75069593 75069623 -10626131 + AT_rich Low_complexity Low_complexity 1 30 0 308 308 97 36 chr15 75070489 75070597 -10625157 + MIR SINE MIR 14 114 -148 321 26 0 0 chr15 75070597 75070635 -10625119 + (CA)n Simple_repeat Simple_repeat 1 38 0 308 308 97 36 chr15 75070635 75070721 -10625033 + MIR SINE MIR 114 220 -42 228 317 49 32 chr15 75072204 75072327 -10623427 + L2 LINE L2 3187 3311 -2 2215 111 3 0 chr15 75072660 75072957 -10622797 - AluSx SINE Alu -14 298 1 316 316 105 23 chr15 75073200 75073333 -10622421 - MIR SINE MIR -80 182 39 415 282 53 41 chr15 75074942 75075112 -10620642 + MER5B DNA MER1_type 6 177 -1 200 194 0 0 chr15 75076991 75077027 -10618727 + (CA)n Simple_repeat Simple_repeat 1 36 0 192 125 0 0 chr15 75078067 75078099 -10617655 + (TC)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chr15 75079348 75079386 -10616368 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr15 75082662 75082683 -10613071 + (T)n Simple_repeat Simple_repeat 1 21 0 246 128 0 0 chr15 75082943 75082982 -10612772 + (T)n Simple_repeat Simple_repeat 1 39 0 315 0 0 0 chr15 75084885 75084920 -10610834 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr15 75085384 75085409 -10610345 + (GGA)n Simple_repeat Simple_repeat 2 26 0 211 205 0 0 chr15 75086143 75086182 -10609572 + GA-rich Low_complexity Low_complexity 1 39 0 2175 121 0 0 chr15 75087017 75087315 -10608439 - AluSx SINE Alu -14 298 1 543 193 15 0 chr15 75087317 75087452 -10608302 + MER96B DNA MER1_type? 255 391 -26 249 230 14 27 chr15 75088266 75088340 -10607414 + GA-rich Low_complexity Low_complexity 2 74 0 620 158 24 182 chr15 75090204 75090451 -10605303 + MER20 DNA MER1_type 12 219 0 235 286 92 20 chr15 75090452 75090550 -10605204 + MIR3 SINE MIR 12 116 -92 21 0 0 0 chr15 75090782 75090803 -10604951 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr15 75090803 75090847 -10604907 + (TA)n Simple_repeat Simple_repeat 2 45 0 344 286 112 33 chr15 75090977 75091180 -10604574 + MIR SINE MIR 16 233 -29 314 102 41 0 chr15 75091491 75091540 -10604214 + MLT1G1 LTR MaLR 1 51 -544 23 0 0 0 chr15 75091577 75091600 -10604154 + AT_rich Low_complexity Low_complexity 1 23 0 315 235 35 0 chr15 75091610 75091695 -10604059 - L1ME4a LINE L1 -1 6120 6033 21 0 0 0 chr15 75092052 75092073 -10603681 + AT_rich Low_complexity Low_complexity 1 21 0 2376 104 7 0 chr15 75092240 75092548 -10603206 - AluSx SINE Alu -2 310 1 2248 73 0 14 chr15 75092937 75093226 -10602528 + AluY SINE Alu 18 302 -9 1142 169 14 2 chr15 75094050 75094280 -10601474 + L1MA4 LINE L1 5817 6053 -101 274 179 45 0 chr15 75094271 75094338 -10601416 + L1MB4 LINE L1 6110 6179 -1 * 2041 128 0 3 chr15 75094361 75094659 -10601095 + AluSg SINE Alu 1 297 -13 205 161 0 0 chr15 75097445 75097476 -10598278 + polypyrimidine Low_complexity Low_complexity 2 32 0 892 214 58 44 chr15 75098560 75098766 -10596988 + AluJo SINE Alu 75 283 -29 306 106 0 0 chr15 75098771 75098818 -10596936 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2550 172 7 26 chr15 75098883 75099276 -10596478 + L1MB3 LINE L1 5353 5785 -398 1120 219 108 15 chr15 75099276 75099610 -10596144 - MLT1A1 LTR MaLR 0 365 1 2550 172 7 26 chr15 75099610 75099767 -10595987 + L1MB3 LINE L1 5785 5943 -240 447 312 64 51 chr15 75100106 75100401 -10595353 + L1MB8 LINE L1 5305 5603 -756 215 224 0 15 chr15 75100414 75100481 -10595273 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 330 26 0 0 chr15 75100577 75100616 -10595138 + (TG)n Simple_repeat Simple_repeat 2 40 0 198 71 0 0 chr15 75100907 75100935 -10594819 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr15 75101196 75101218 -10594536 + AT_rich Low_complexity Low_complexity 1 22 0 2383 100 0 0 chr15 75101803 75102112 -10593642 - AluSc SINE Alu 0 309 1 440 324 91 50 chr15 75102112 75102604 -10593150 - HAL1b LINE L1 -679 669 158 954 166 122 8 chr15 75103033 75103446 -10592308 - MLT1D LTR MaLR 0 505 27 2520 117 56 10 chr15 75103779 75104188 -10591566 + MSTA LTR MaLR 1 428 0 2242 86 7 4 chr15 75104196 75104476 -10591278 - AluSc SINE Alu -13 296 16 1763 158 0 48 chr15 75106282 75106592 -10589162 - AluJo SINE Alu -2 310 16 263 333 114 8 chr15 75107825 75107957 -10587797 - L2 LINE L2 0 3272 3127 1950 126 7 0 chr15 75107967 75108238 -10587516 + AluSx SINE Alu 24 296 -16 1492 187 81 44 chr15 75108266 75108721 -10587033 + L1MB8 LINE L1 5705 6176 -2 531 324 173 24 chr15 75108736 75109536 -10586218 - L2 LINE L2 -135 3178 2260 290 348 161 6 chr15 75109536 75109852 -10585902 - L2 LINE L2 -1238 2076 1712 620 231 48 27 chr15 75109860 75110046 -10585708 - MLT1J LTR MaLR -2 509 320 450 288 34 0 chr15 75110119 75110265 -10585489 - MLT1J LTR MaLR -358 153 3 264 313 125 67 chr15 75110319 75110735 -10585019 - L2 LINE L2 -1639 1675 1236 1011 166 0 12 chr15 75110752 75110950 -10584804 - AluSp SINE Alu 0 313 118 274 343 21 14 chr15 75110982 75111125 -10584629 - L2 LINE L2 -2135 1179 1036 185 299 39 13 chr15 75111436 75111513 -10584241 - L3 LINE CR1 -424 1153 1075 4213 174 35 29 chr15 75112084 75112409 -10583345 - L1MB1 LINE L1 -1 6167 5845 3613 210 67 16 chr15 75112409 75113228 -10582526 - MER21B LTR ERV1 -2 861 1 4213 174 35 29 chr15 75113228 75114223 -10581531 - L1MB1 LINE L1 -323 5845 4821 189 0 0 0 chr15 75114223 75114244 -10581510 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 4213 174 35 29 chr15 75114244 75114259 -10581495 - L1MB1 LINE L1 -1347 4821 4808 2353 96 7 0 chr15 75114670 75114973 -10580781 + AluSp SINE Alu 1 305 -8 2083 133 0 3 chr15 75115032 75115325 -10580429 + AluSx SINE Alu 1 292 -20 236 206 28 9 chr15 75115326 75115433 -10580321 + (TA)n Simple_repeat Simple_repeat 2 110 0 23 33 0 0 chr15 75117598 75117628 -10578126 + AT_rich Low_complexity Low_complexity 1 30 0 277 263 76 85 chr15 75118027 75118145 -10577609 + MER5B DNA MER1_type 61 177 -1 187 120 120 40 chr15 75118283 75118333 -10577421 + L2 LINE L2 2428 2481 -833 264 30 0 0 chr15 75119996 75120029 -10575725 + (TA)n Simple_repeat Simple_repeat 2 34 0 355 325 46 21 chr15 75120935 75121215 -10574539 - L1ME LINE L1 -303 5818 5532 607 125 19 0 chr15 75121233 75121337 -10574417 - L1MA9 LINE L1 0 6312 6207 1631 44 5 0 chr15 75124009 75124213 -10571541 + L1PA3 LINE L1 5951 6155 0 29 0 0 0 chr15 75124213 75124242 -10571512 + AT_rich Low_complexity Low_complexity 1 29 0 1096 277 106 40 chr15 75124538 75124553 -10571201 - HAL1 LINE L1 -79 2428 2415 2005 133 43 3 chr15 75124553 75124853 -10570901 - AluSx SINE Alu 0 312 1 1096 277 106 40 chr15 75124853 75125768 -10569986 - HAL1 LINE L1 -92 2415 1436 473 230 88 72 chr15 75125869 75126200 -10569554 - HAL1 LINE L1 -1398 1109 774 340 235 136 38 chr15 75126415 75126547 -10569207 - HAL1 LINE L1 -2024 483 339 2381 93 0 0 chr15 75126549 75126849 -10568905 - AluSc SINE Alu -9 300 1 2916 29 0 0 chr15 75126874 75127218 -10568536 - L1PA4 LINE L1 0 6155 5812 3877 29 0 0 chr15 75128766 75129244 -10566510 - L1PA4 LINE L1 -352 5803 5326 307 271 16 33 chr15 75129325 75129447 -10566307 - HAL1 LINE L1 -2270 237 118 2200 116 3 0 chr15 75129752 75130046 -10565708 - AluSx SINE Alu -17 295 1 180 0 0 0 chr15 75130905 75130925 -10564829 + (T)n Simple_repeat Simple_repeat 1 20 0 288 189 294 46 chr15 75131181 75131334 -10564420 + MIR SINE MIR 36 226 -36 2111 127 6 16 chr15 75132082 75132397 -10563357 - AluSx SINE Alu 0 312 1 228 295 107 33 chr15 75133056 75133178 -10562576 - L2 LINE L2 -4 3268 3138 * 308 275 28 18 chr15 75133154 75133263 -10562491 + L2 LINE L2 3198 3307 -6 202 158 26 0 chr15 75133442 75133480 -10562274 + MIR SINE MIR 73 111 -151 441 0 0 0 chr15 75133683 75133732 -10562022 + (CA)n Simple_repeat Simple_repeat 2 50 0 1978 118 3 17 chr15 75133940 75134271 -10561483 - AluY SINE Alu 0 327 1 421 271 20 16 chr15 75134728 75134880 -10560874 + L1MC/D LINE L1 5615 5768 -591 2723 45 0 0 chr15 75135261 75135572 -10560182 + AluY SINE Alu 1 311 0 767 244 17 13 chr15 75136158 75136487 -10559267 + AluY SINE Alu 2 331 0 1121 284 97 58 chr15 75136716 75136777 -10558977 - L1M4 LINE L1 -1069 5077 5020 1633 222 12 3 chr15 75136777 75137120 -10558634 - MER7A DNA MER2_type -1 345 2 1121 284 97 58 chr15 75137120 75138114 -10557640 - L1M4 LINE L1 -1126 5020 4006 266 315 22 0 chr15 75138277 75138366 -10557388 + MIR SINE MIR 102 192 -70 2202 102 0 7 chr15 75138369 75138663 -10557091 + AluSq SINE Alu 5 296 -17 21 36 0 0 chr15 75138663 75138691 -10557063 + AT_rich Low_complexity Low_complexity 1 28 0 444 287 119 99 chr15 75138759 75139554 -10556200 - L1M4 LINE L1 -2233 3913 3103 252 122 0 0 chr15 75139849 75139890 -10555864 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1643 224 42 48 chr15 75141101 75141602 -10554152 + MLT1D LTR MaLR 1 498 -7 800 244 117 30 chr15 75142131 75142528 -10553226 + MER57B LTR ERV1 1 424 -10 344 337 94 11 chr15 75144950 75145131 -10550623 + MIR SINE MIR 6 201 -61 212 250 143 0 chr15 75145152 75145208 -10550546 + MIR SINE MIR 62 125 -137 563 170 134 29 chr15 75145209 75145380 -10550374 + MER53 DNA DNA 1 189 0 31 0 0 0 chr15 75145459 75145490 -10550264 + AT_rich Low_complexity Low_complexity 1 31 0 2069 107 0 0 chr15 75146321 75146620 -10549134 + AluSx SINE Alu 14 312 0 234 0 0 0 chr15 75148898 75148924 -10546830 + (CA)n Simple_repeat Simple_repeat 1 26 0 271 262 0 0 chr15 75149182 75149243 -10546511 + L2 LINE L2 3252 3312 -1 309 278 0 56 chr15 75150420 75150528 -10545226 + L1MC4 LINE L1 6615 6716 -1326 292 265 15 0 chr15 75150542 75150678 -10545076 + (TA)n Simple_repeat Simple_repeat 1 138 0 1265 225 69 45 chr15 75150678 75150725 -10545029 + MER74B LTR ERVL 75 119 -503 1860 172 0 16 chr15 75150725 75151039 -10544715 + AluJo SINE Alu 1 309 -3 1265 225 69 45 chr15 75151039 75151453 -10544301 + MER74B LTR ERVL 119 547 -75 260 216 27 14 chr15 75151392 75151466 -10544288 - MER88 LTR ERVL -311 153 79 * 510 294 74 32 chr15 75152053 75152253 -10543501 + L1ME3A LINE L1 5499 5689 -481 713 223 0 0 chr15 75152253 75152383 -10543371 + FLAM_A SINE Alu 1 130 -3 510 294 74 32 chr15 75152383 75152617 -10543137 + L1ME3A LINE L1 5689 5951 -219 1641 174 17 13 chr15 75152846 75153145 -10542609 + AluJb SINE Alu 9 308 -4 2072 158 91 24 chr15 75153666 75154116 -10541638 + LTR12 LTR ERV1 1 480 -234 238 277 103 65 chr15 75154361 75154516 -10541238 - MIR SINE MIR -67 195 35 2126 133 36 25 chr15 75155911 75156271 -10539483 - THE1B LTR MaLR 0 364 1 3096 139 18 0 chr15 75157059 75157547 -10538207 + LOR1a LTR ERV1 1 497 0 224 291 77 59 chr15 75159724 75159922 -10535832 - MIR SINE MIR -18 244 47 186 43 0 0 chr15 75160373 75160396 -10535358 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 390 57 0 0 chr15 75160867 75160920 -10534834 + (CA)n Simple_repeat Simple_repeat 2 54 0 306 164 0 0 chr15 75162666 75162721 -10533033 + (CA)n Simple_repeat Simple_repeat 2 56 0 392 189 28 0 chr15 75162776 75162919 -10532835 + (TA)n Simple_repeat Simple_repeat 1 147 0 461 178 30 20 chr15 75165562 75165663 -10530091 - AluY SINE Alu -3 308 207 31 0 0 0 chr15 75165978 75166009 -10529745 + AT_rich Low_complexity Low_complexity 1 31 0 845 226 29 19 chr15 75166034 75166322 -10529432 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr15 75166597 75166619 -10529135 + AT_rich Low_complexity Low_complexity 1 22 0 774 227 24 29 chr15 75166969 75167176 -10528578 + MIR SINE MIR 51 256 -6 208 310 44 62 chr15 75217715 75217828 -10477926 + MER5B DNA MER1_type 1 111 -67 26 30 0 0 chr15 75217855 75217888 -10477866 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr15 75217992 75218012 -10477742 + (T)n Simple_repeat Simple_repeat 1 20 0 415 288 186 28 chr15 75218120 75218335 -10477419 + MIR SINE MIR 14 262 0 * 1059 350 78 39 chr15 75218332 75218991 -10476763 + L2 LINE L2 675 1397 -1917 1977 130 0 29 chr15 75218991 75219298 -10476456 + AluSx SINE Alu 2 299 -13 1059 350 78 39 chr15 75219298 75219752 -10476002 + L2 LINE L2 1397 1832 -1482 446 366 52 13 chr15 75219808 75220040 -10475714 - MIR SINE MIR -16 246 6 267 290 9 56 chr15 75220881 75220988 -10474766 + MIR SINE MIR 84 185 -77 238 261 14 0 chr15 75221003 75221072 -10474682 + (CATA)n Simple_repeat Simple_repeat 1 70 0 399 113 0 0 chr15 75221634 75221696 -10474058 + (TC)n Simple_repeat Simple_repeat 2 63 0 1469 140 0 5 chr15 75221851 75222072 -10473682 - AluY SINE Alu -91 220 1 1004 320 95 14 chr15 75222081 75222565 -10473189 - L1MEc LINE L1 -5822 574 52 22 0 0 0 chr15 75222757 75222779 -10472975 + AT_rich Low_complexity Low_complexity 1 22 0 215 157 0 20 chr15 75222779 75222830 -10472924 + (TTTAA)n Simple_repeat Simple_repeat 1 50 0 341 271 41 0 chr15 75223228 75223350 -10472404 + L1ME4a LINE L1 5756 5882 -239 33 43 0 0 chr15 75223531 75223578 -10472176 + AT_rich Low_complexity Low_complexity 1 47 0 249 57 0 0 chr15 75223845 75223880 -10471874 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 183 139 0 0 chr15 75223880 75223916 -10471838 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 333 0 0 0 chr15 75223918 75223955 -10471799 + (GA)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr15 75224176 75224219 -10471535 + AT_rich Low_complexity Low_complexity 1 43 0 2240 108 0 0 chr15 75224707 75225004 -10470750 - AluSc SINE Alu -12 297 1 29 28 0 0 chr15 75226965 75227001 -10468753 + AT_rich Low_complexity Low_complexity 1 36 0 343 262 118 63 chr15 75227115 75227481 -10468273 - L1ME4a LINE L1 -180 5941 5556 22 0 0 0 chr15 75227894 75227916 -10467838 + AT_rich Low_complexity Low_complexity 1 22 0 436 283 30 0 chr15 75228343 75228442 -10467312 - MER5A DNA MER1_type -16 173 72 378 206 14 0 chr15 75228517 75228590 -10467164 - MER5A DNA MER1_type -112 77 4 26 30 0 0 chr15 75229863 75229896 -10465858 + AT_rich Low_complexity Low_complexity 1 33 0 616 236 56 6 chr15 75231492 75231653 -10464101 + L1MB8 LINE L1 6005 6173 -5 350 271 256 0 chr15 75231859 75231988 -10463766 - MER5A DNA MER1_type 0 189 28 229 351 146 32 chr15 75232074 75232259 -10463495 + MIR SINE MIR 41 246 -16 203 335 40 59 chr15 75232610 75232762 -10462992 - MIR SINE MIR -94 168 20 188 303 109 25 chr15 75232904 75233023 -10462731 + MIR SINE MIR 107 235 -27 2935 202 16 24 chr15 75233045 75233549 -10462205 + MLT2B3 LTR ERVL 1 502 -52 650 24 24 0 chr15 75233549 75233632 -10462122 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2935 202 16 24 chr15 75233632 75233677 -10462077 + MLT2B3 LTR ERVL 502 546 -8 326 304 130 6 chr15 75235040 75235201 -10460553 - MIR SINE MIR -3 259 79 730 178 0 0 chr15 75236397 75236515 -10459239 + FLAM_C SINE Alu 1 118 -15 186 43 0 0 chr15 75236522 75236545 -10459209 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 208 286 32 0 chr15 75236943 75237006 -10458748 + MIR SINE MIR 94 158 -104 737 163 57 0 chr15 75237117 75237240 -10458514 - FLAM_C SINE Alu -3 130 1 374 286 90 17 chr15 75238153 75238387 -10457367 + L1ME LINE L1 5568 5818 -303 2142 106 7 14 chr15 75240614 75240907 -10454847 + AluSq SINE Alu 1 291 -22 514 316 75 63 chr15 75241934 75242282 -10453472 - L2 LINE L2 -70 3243 2892 238 369 70 11 chr15 75243259 75243446 -10452308 + MIR SINE MIR 9 206 -56 348 286 83 16 chr15 75244298 75244453 -10451301 + MIR SINE MIR 3 159 -58 232 305 43 43 chr15 75244714 75244878 -10450876 + LTR67 LTR ERVL 392 555 -2 591 302 90 9 chr15 75244887 75245109 -10450645 - MIR SINE MIR -8 254 15 201 239 134 0 chr15 75245557 75245624 -10450130 + MIR3 SINE MIR 116 191 -17 342 302 48 40 chr15 75245794 75245920 -10449834 + L2 LINE L2 3146 3272 0 449 333 82 35 chr15 75246162 75246649 -10449105 - L2 LINE L2 0 3313 2804 207 69 0 0 chr15 75246655 75246684 -10449070 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 834 273 87 56 chr15 75248195 75248587 -10447167 - MLT1J LTR MaLR -101 410 7 306 235 10 71 chr15 75248594 75248692 -10447062 - MIR SINE MIR -108 154 63 1024 266 63 34 chr15 75248966 75249349 -10446405 + MER69 DNA AcHobo 1 394 -2132 810 258 109 21 chr15 75249350 75249772 -10445982 + MER69 DNA AcHobo 1797 2255 -271 417 214 156 0 chr15 75249805 75249978 -10445776 + MER69 DNA AcHobo 2322 2521 -5 1831 129 44 103 chr15 75250308 75250695 -10445059 - THE1B LTR MaLR 0 364 1 11050 95 12 21 chr15 75250695 75252289 -10443465 - THE1B-int LTR MaLR 0 1580 1 2130 125 48 23 chr15 75252289 75252642 -10443112 - THE1B LTR MaLR 0 364 3 4267 169 23 1 chr15 75252728 75253498 -10442256 + L1MC1 LINE L1 5413 6199 -134 333 108 0 4 chr15 75253502 75253559 -10442195 - MLT2A2 LTR ERVL -7 446 396 269 250 11 0 chr15 75253592 75253684 -10442070 + (TA)n Simple_repeat Simple_repeat 2 94 0 288 0 0 0 chr15 75253753 75253785 -10441969 + (TG)n Simple_repeat Simple_repeat 1 32 0 2970 92 13 0 chr15 75253785 75254174 -10441580 - MLT2A2 LTR ERVL -59 394 1 2224 231 94 30 chr15 75254303 75255069 -10440685 - L1ME2 LINE L1 -7 6952 6138 2090 246 69 85 chr15 75255075 75255545 -10440209 - L1ME2 LINE L1 -918 6023 5547 1665 181 33 13 chr15 75255545 75255849 -10439905 - AluJb SINE Alu 0 312 3 2090 246 69 85 chr15 75255849 75256890 -10438864 - L1ME2 LINE L1 -1394 5547 4536 180 77 0 0 chr15 75257042 75257068 -10438686 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr15 75257088 75257125 -10438629 + (TA)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr15 75257124 75257155 -10438599 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 504 198 117 136 chr15 75257199 75257472 -10438282 + MLT1B LTR MaLR 4 271 -119 962 210 35 0 chr15 75257475 75257675 -10438079 + L1M2 LINE L1 5585 5791 -521 225 344 0 0 chr15 75257675 75257736 -10438018 - MER2 DNA MER2_type 0 345 285 1083 192 10 10 chr15 75257771 75257979 -10437775 - MER2 DNA MER2_type -136 209 2 333 0 0 0 chr15 75258026 75258063 -10437691 + (CA)n Simple_repeat Simple_repeat 2 38 0 1490 162 37 25 chr15 75258067 75258394 -10437360 + L1MA9 LINE L1 5798 6128 -184 719 120 0 0 chr15 75258394 75258494 -10437260 + AluS SINE Alu 1 100 -213 1835 128 0 4 chr15 75258494 75258744 -10437010 - AluSx SINE Alu -43 269 21 848 280 45 47 chr15 75258746 75259318 -10436436 - L1ME2 LINE L1 -3985 3137 2567 229 212 26 88 chr15 75259722 75259835 -10435919 - L1ME2 LINE L1 -6216 207 102 1081 58 0 53 chr15 75259922 75260111 -10435643 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 283 294 110 41 chr15 75262450 75262668 -10433086 - L2 LINE L2 -1448 1866 1634 320 244 134 17 chr15 75262681 75262800 -10432954 - L1M LINE L1 -764 5398 5266 21 0 0 0 chr15 75262917 75262938 -10432816 + AT_rich Low_complexity Low_complexity 1 21 0 425 292 60 16 chr15 75263013 75263198 -10432556 - MIR SINE MIR 0 262 70 242 289 124 33 chr15 75263671 75263792 -10431962 + MIR SINE MIR 131 262 0 293 395 0 0 chr15 75263858 75263972 -10431782 - L3 LINE CR1 -119 1458 1345 21 0 0 0 chr15 75264033 75264054 -10431700 + AT_rich Low_complexity Low_complexity 1 21 0 260 293 85 0 chr15 75264260 75264342 -10431412 - L3 LINE CR1 -677 900 812 288 0 0 0 chr15 75264768 75264800 -10430954 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 1166 159 0 0 chr15 75265092 75265268 -10430486 + AluSg/x SINE Alu 137 312 0 225 0 0 0 chr15 75267138 75267163 -10428591 + (TA)n Simple_repeat Simple_repeat 2 26 0 1873 163 58 0 chr15 75270181 75270507 -10425247 + MER7A DNA MER2_type 1 343 -3 370 222 70 134 chr15 75271333 75271390 -10424364 + MIR SINE MIR 28 87 -175 2288 104 0 9 chr15 75271390 75271706 -10424048 - AluSq SINE Alu 0 313 1 370 222 70 134 chr15 75271706 75271819 -10423935 + MIR SINE MIR 87 187 -75 707 286 22 35 chr15 75271841 75272072 -10423682 + MIR SINE MIR 24 251 -11 318 80 0 0 chr15 75272298 75272348 -10423406 + (TA)n Simple_repeat Simple_repeat 1 50 0 202 338 82 69 chr15 75272650 75272881 -10422873 + L2 LINE L2 2950 3183 -89 228 292 46 62 chr15 75273070 75273200 -10422554 - MIR3 SINE MIR -34 174 47 207 0 0 0 chr15 75273346 75273369 -10422385 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 263 278 87 40 chr15 75273727 75274026 -10421728 + L1ME4a LINE L1 5709 6021 -100 279 161 0 0 chr15 75274038 75274094 -10421660 + L1ME4a LINE L1 6062 6117 -4 276 379 57 16 chr15 75274308 75274432 -10421322 + MIR SINE MIR 20 148 -114 185 310 20 40 chr15 75274517 75274617 -10421137 + L2 LINE L2 2973 3070 -202 1131 227 54 36 chr15 75276882 75277217 -10418537 + MER58B DNA MER1_type 1 341 0 266 157 157 79 chr15 75278398 75278443 -10417311 - L1ME4a LINE L1 -2 6119 6079 2358 93 3 0 chr15 75278443 75278754 -10417000 + AluSp SINE Alu 1 312 -1 266 157 157 79 chr15 75278754 75278848 -10416906 - L1ME4a LINE L1 -42 6079 5969 2116 125 0 22 chr15 75278922 75279241 -10416513 - AluSx SINE Alu 0 312 1 234 219 0 31 chr15 75279512 75279576 -10416178 + A-rich Low_complexity Low_complexity 4 65 0 236 297 48 91 chr15 75280999 75281164 -10414590 + MIR3 SINE MIR 43 200 -8 237 270 10 70 chr15 75281753 75281853 -10413901 + L2 LINE L2 2889 2982 -290 230 329 0 0 chr15 75282154 75282233 -10413521 - MLT1H LTR MaLR -16 533 455 615 281 80 52 chr15 75282259 75282547 -10413207 - MLT1H LTR MaLR -225 324 29 23 0 0 0 chr15 75284691 75284714 -10411040 + AT_rich Low_complexity Low_complexity 1 23 0 823 131 0 36 chr15 75285732 75285869 -10409885 + FLAM_C SINE Alu 2 133 0 1104 150 50 54 chr15 75285929 75286084 -10409670 + L1MC1 LINE L1 6095 6250 -83 2166 125 0 0 chr15 75286084 75286379 -10409375 + AluSx SINE Alu 1 295 -17 1104 150 50 54 chr15 75286379 75286463 -10409291 + L1MC1 LINE L1 6250 6333 0 605 267 115 24 chr15 75286552 75286840 -10408914 + MER46C DNA MER2_type 22 335 -3 348 193 28 9 chr15 75287218 75287327 -10408427 + GA-rich Low_complexity Low_complexity 2 112 0 888 167 56 30 chr15 75288379 75288577 -10407177 - L1MC1 LINE L1 -5 6328 6126 285 276 143 0 chr15 75288585 75288683 -10407071 - MIR SINE MIR -49 213 102 2379 92 0 0 chr15 75291306 75291610 -10404144 - AluY SINE Alu -7 304 1 686 326 57 0 chr15 75292015 75292245 -10403509 + MIR SINE MIR 2 244 -18 383 262 97 77 chr15 75293137 75293385 -10402369 + MIR SINE MIR 10 262 0 669 214 44 58 chr15 75293655 75293861 -10401893 + MER3 DNA MER1_type 7 209 0 191 289 0 0 chr15 75293862 75293907 -10401847 - L2 LINE L2 -310 2962 2918 203 365 0 0 chr15 75294027 75294101 -10401653 - L2 LINE L2 -556 2758 2685 213 39 0 0 chr15 75295410 75295436 -10400318 + (A)n Simple_repeat Simple_repeat 1 26 0 689 286 57 5 chr15 75295479 75295689 -10400065 - MIR SINE MIR 0 262 42 21 57 0 0 chr15 75297928 75297963 -10397791 + AT_rich Low_complexity Low_complexity 1 35 0 201 74 0 0 chr15 75300950 75300977 -10394777 + (T)n Simple_repeat Simple_repeat 1 27 0 216 67 0 0 chr15 75301300 75301330 -10394424 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr15 75301555 75301583 -10394171 + AT_rich Low_complexity Low_complexity 1 28 0 244 319 145 14 chr15 75302912 75303050 -10392704 + MIR SINE MIR 6 161 -101 370 312 21 0 chr15 75303056 75303149 -10392605 - MIR SINE MIR -153 109 15 233 287 118 22 chr15 75304017 75304153 -10391601 + L2 LINE L2 3148 3296 -17 618 195 2 8 chr15 75304712 75304854 -10390900 + L1MA8 LINE L1 6002 6153 -147 324 318 24 0 chr15 75306093 75306219 -10389535 + MIR SINE MIR 78 206 -56 357 304 124 74 chr15 75306301 75306831 -10388923 + L3 LINE CR1 584 1140 -437 2583 253 76 34 chr15 75307789 75310541 -10385213 + L1M4 LINE L1 14 3067 -3577 1082 209 32 0 chr15 75310638 75310891 -10384863 - L1M4 LINE L1 -3288 2858 2598 21 57 0 0 chr15 75310906 75310941 -10384813 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr15 75311509 75311531 -10384223 + AT_rich Low_complexity Low_complexity 1 22 0 232 207 17 0 chr15 75312104 75312162 -10383592 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1987 117 3 3 chr15 75312247 75312538 -10383216 - AluSx SINE Alu -21 291 1 1934 112 4 0 chr15 75315708 75315966 -10379788 + AluSq SINE Alu 1 259 -54 447 193 7 28 chr15 75315968 75315984 -10379770 + (TA)n Simple_repeat Simple_repeat 2 17 -126 246 32 0 0 chr15 75315984 75316015 -10379739 + (GA)n Simple_repeat Simple_repeat 2 32 0 447 193 7 28 chr15 75316015 75316143 -10379611 + (TA)n Simple_repeat Simple_repeat 17 143 0 278 348 116 0 chr15 75316355 75316467 -10379287 - MIR SINE MIR -136 126 2 26 50 0 0 chr15 75317496 75317536 -10378218 + AT_rich Low_complexity Low_complexity 1 40 0 718 216 6 6 chr15 75317655 75317817 -10377937 + FAM SINE Alu 1 49 0 250 311 48 0 chr15 75318171 75318274 -10377480 + MER45C DNA AcHobo 502 609 -344 364 164 0 0 chr15 75318280 75318335 -10377419 + MER45C DNA AcHobo 899 953 0 319 177 19 29 chr15 75318686 75318793 -10376961 + MSTA LTR MaLR 14 116 -316 2233 150 48 10 chr15 75319085 75319478 -10376276 - MSTB LTR MaLR 0 426 19 183 156 0 0 chr15 75320599 75320631 -10375123 + T-rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 75322395 75322416 -10373338 + AT_rich Low_complexity Low_complexity 1 21 0 243 240 0 0 chr15 75322986 75323036 -10372718 + GA-rich Low_complexity Low_complexity 1 50 0 207 0 0 0 chr15 75324304 75324327 -10371427 + (A)n Simple_repeat Simple_repeat 1 23 0 320 279 94 35 chr15 75325897 75326081 -10369673 + L1MC/D LINE L1 5270 5461 -2336 245 169 40 16 chr15 75326243 75326367 -10369387 + (TA)n Simple_repeat Simple_repeat 1 127 0 268 229 19 19 chr15 75326591 75326696 -10369058 + (TA)n Simple_repeat Simple_repeat 2 106 0 189 0 0 0 chr15 75327962 75327983 -10367771 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 43 0 0 0 chr15 75329723 75329766 -10365988 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 75329798 75329820 -10365934 + AT_rich Low_complexity Low_complexity 1 22 0 374 326 73 28 chr15 75330004 75330182 -10365572 + MIR SINE MIR 6 191 -71 2162 118 0 3 chr15 75330770 75331059 -10364695 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr15 75331059 75331089 -10364665 + AT_rich Low_complexity Low_complexity 1 30 0 185 287 130 37 chr15 75332009 75332117 -10363637 + MIR SINE MIR 72 189 -73 601 124 57 10 chr15 75332164 75332447 -10363307 + (TCTA)n Simple_repeat Simple_repeat 1 296 0 2329 58 3 29 chr15 75332490 75332799 -10362955 + AluY SINE Alu 1 301 -10 2873 219 50 45 chr15 75332934 75333840 -10361914 - L1ME1 LINE L1 -44 6122 5210 358 106 15 15 chr15 75333982 75334048 -10361706 + (TCTCC)n Simple_repeat Simple_repeat 3 68 0 4737 225 29 3 chr15 75334048 75335045 -10360709 + HERVL74 LTR ERVL 2307 3329 -2356 926 176 6 18 chr15 75335050 75335215 -10360539 + HERVL74 LTR ERVL 3491 3653 -2032 906 189 0 0 chr15 75335207 75335366 -10360388 + HERVL74 LTR ERVL 3913 4071 -1614 * 1464 236 55 62 chr15 75335344 75336039 -10359715 + HERVL74 LTR ERVL 4578 5251 -434 394 223 9 54 chr15 75336045 75336157 -10359597 + HERVL74 LTR ERVL 5393 5499 -186 24 32 0 0 chr15 75336329 75336360 -10359394 + AT_rich Low_complexity Low_complexity 1 31 0 558 132 8 23 chr15 75336755 75336884 -10358870 + (TTC)n Simple_repeat Simple_repeat 3 129 0 2045 128 7 0 chr15 75336963 75337253 -10358501 + AluSp SINE Alu 1 292 -21 2138 113 56 31 chr15 75337274 75337629 -10358125 - THE1B LTR MaLR 0 364 1 11210 106 8 2 chr15 75337633 75339199 -10356555 - THE1B-int LTR MaLR -4 1576 1 2081 126 50 31 chr15 75339199 75339556 -10356198 - THE1B LTR MaLR 0 364 1 1107 236 61 27 chr15 75339561 75339891 -10355863 - MLT1A1 LTR MaLR 0 365 25 197 345 70 29 chr15 75340423 75340594 -10355160 + L2 LINE L2 1912 2089 -1225 2108 110 17 7 chr15 75340853 75341152 -10354602 - AluSg SINE Alu -8 302 1 715 319 42 22 chr15 75341366 75341727 -10354027 - MLT1I LTR MaLR -22 387 20 304 317 108 25 chr15 75342147 75342267 -10353487 + L2 LINE L2 3116 3245 -27 27 0 0 0 chr15 75342342 75342369 -10353385 + AT_rich Low_complexity Low_complexity 1 27 0 1725 121 32 0 chr15 75342377 75342625 -10353129 - AluSq SINE Alu -56 257 2 21 0 0 0 chr15 75342786 75342807 -10352947 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr15 75342942 75342972 -10352782 + (TATATG)n Simple_repeat Simple_repeat 5 34 0 390 205 0 0 chr15 75343974 75344057 -10351697 + (TA)n Simple_repeat Simple_repeat 2 84 0 3735 192 98 27 chr15 75345518 75346518 -10349236 + L1MC3 LINE L1 6707 7777 -8 2079 137 0 0 chr15 75347116 75347433 -10348321 - AluSq SINE Alu 0 317 1 1660 173 66 6 chr15 75348789 75349107 -10346647 - MER1B DNA MER1_type 0 337 1 226 250 50 17 chr15 75349288 75349348 -10346406 + L2 LINE L2 3244 3305 -8 2938 93 47 0 chr15 75349885 75350315 -10345439 + L1PA10 LINE L1 5709 6158 -10 646 181 137 64 chr15 75350386 75350590 -10345164 + MER20 DNA MER1_type 1 219 0 387 135 11 22 chr15 75351116 75351205 -10344549 + GA-rich Low_complexity Low_complexity 1 88 0 298 344 177 0 chr15 75351908 75352100 -10343654 + L3 LINE CR1 1231 1456 -121 1966 150 40 33 chr15 75352285 75352832 -10342922 - MLT2A2 LTR ERVL 0 554 1 2183 88 10 7 chr15 75353140 75353437 -10342317 + AluSx SINE Alu 3 300 -12 345 219 9 67 chr15 75354105 75354210 -10341544 + MIR SINE MIR 94 192 -70 342 67 0 0 chr15 75354512 75354557 -10341197 + (TG)n Simple_repeat Simple_repeat 2 46 0 201 294 0 0 chr15 75355619 75355670 -10340084 - L3b LINE CR1 0 1583 1533 503 276 154 0 chr15 75355680 75355836 -10339918 + MER5A DNA MER1_type 10 189 0 231 240 160 53 chr15 75355907 75355982 -10339772 - MER5B DNA MER1_type -74 104 22 717 198 93 6 chr15 75356015 75356187 -10339567 + MER5A DNA MER1_type 1 187 -2 588 196 5 142 chr15 75356252 75356456 -10339298 - MER3 DNA MER1_type -80 129 1 215 245 0 0 chr15 75356484 75356537 -10339217 + (TAA)n Simple_repeat Simple_repeat 3 55 0 321 360 73 7 chr15 75358328 75358464 -10337290 - MIR3 SINE MIR -48 160 16 2158 143 0 0 chr15 75358750 75359058 -10336696 - AluSx SINE Alu -4 308 1 407 320 47 12 chr15 75359190 75359362 -10336392 - MIR SINE MIR -14 248 71 1776 278 128 38 chr15 75359929 75360700 -10335054 + L2 LINE L2 1712 2552 -762 774 267 52 0 chr15 75360701 75360892 -10334862 + MER8 DNA MER2_type 2 202 -37 2010 133 0 0 chr15 75361133 75361452 -10334302 - AluSq SINE Alu 0 319 1 198 0 0 0 chr15 75362345 75362367 -10333387 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 245 135 19 0 chr15 75362397 75362449 -10333305 + GA-rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr15 75364456 75364501 -10331253 + AT_rich Low_complexity Low_complexity 1 45 0 201 215 15 15 chr15 75364587 75364652 -10331102 + (TA)n Simple_repeat Simple_repeat 2 66 0 764 204 0 0 chr15 75364821 75364953 -10330801 + AluJo SINE Alu 1 132 -170 279 227 0 0 chr15 75364953 75365019 -10330735 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 227 259 74 0 chr15 75365025 75365106 -10330648 - L1MC4 LINE L1 -1340 6702 6616 336 83 0 0 chr15 75365106 75365154 -10330600 + (TG)n Simple_repeat Simple_repeat 2 49 0 735 216 60 12 chr15 75365158 75365325 -10330429 + AluJo SINE Alu 137 311 -1 26 50 0 0 chr15 75365601 75365641 -10330113 + AT_rich Low_complexity Low_complexity 1 40 0 549 278 30 6 chr15 75366920 75367089 -10328665 - MIR SINE MIR -29 233 61 24 0 0 0 chr15 75367336 75367360 -10328394 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr15 75367806 75367838 -10327916 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 75368287 75368310 -10327444 + AT_rich Low_complexity Low_complexity 1 23 0 259 83 0 0 chr15 75370255 75370291 -10325463 + MADE1 DNA Mariner 1 36 -44 251 211 19 0 chr15 75370370 75370422 -10325332 - L2 LINE L2 0 3313 3261 186 344 0 0 chr15 75371339 75371400 -10324354 - L2 LINE L2 -2 3270 3210 401 224 0 0 chr15 75372012 75372088 -10323666 + Tigger7 DNA MER2_type 1 76 -263 1393 206 0 0 chr15 75372089 75372361 -10323393 - Tigger7 DNA MER2_type -204 346 75 * 1519 139 21 80 chr15 75372359 75372698 -10323056 + Tigger7 DNA MER2_type 2243 2561 -26 263 113 19 0 chr15 75372707 75372760 -10322994 + (TA)n Simple_repeat Simple_repeat 1 54 0 242 187 112 0 chr15 75372776 75372883 -10322871 + (TATAA)n Simple_repeat Simple_repeat 2 120 0 237 139 0 0 chr15 75373384 75373427 -10322327 + (TA)n Simple_repeat Simple_repeat 1 43 0 241 195 23 16 chr15 75373869 75373997 -10321757 + (CA)n Simple_repeat Simple_repeat 1 129 0 986 152 0 0 chr15 75374112 75374263 -10321491 - FRAM SINE Alu -3 173 23 182 88 0 29 chr15 75374600 75374634 -10321120 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 597 302 56 56 chr15 75374676 75375070 -10320684 + L1ME4a LINE L1 5527 5920 -201 222 360 85 20 chr15 75375784 75375937 -10319817 + MIR SINE MIR 5 167 -95 1165 154 0 0 chr15 75376860 75377035 -10318719 - AluSg/x SINE Alu -6 304 130 850 197 0 21 chr15 75377749 75378055 -10317699 - MLT1A1 LTR MaLR -2 363 1 41 36 0 0 chr15 75378399 75378454 -10317300 + AT_rich Low_complexity Low_complexity 1 55 0 243 0 0 0 chr15 75378518 75378545 -10317209 + (A)n Simple_repeat Simple_repeat 1 27 0 262 333 24 0 chr15 75379386 75379470 -10316284 + L2 LINE L2 3187 3272 0 1822 162 3 0 chr15 75380031 75380350 -10315404 + AluSx SINE Alu 6 325 0 285 261 43 11 chr15 75381490 75381582 -10314172 - MLT1I LTR MaLR 0 409 315 377 226 29 20 chr15 75381753 75381855 -10313899 - MLT1I LTR MaLR -257 152 50 193 273 0 0 chr15 75382558 75382602 -10313152 + L2 LINE L2 3262 3305 -8 194 302 63 0 chr15 75384641 75384704 -10311050 - L2 LINE L2 -15 3298 3232 536 0 16 0 chr15 75385191 75385255 -10310499 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 235 268 24 0 chr15 75385285 75385367 -10310387 - L1MC4 LINE L1 -1339 6703 6620 292 232 144 16 chr15 75387554 75387679 -10308075 - MIR SINE MIR -12 250 110 234 179 0 0 chr15 75387736 75387792 -10307962 + T-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 75387813 75387834 -10307920 + AT_rich Low_complexity Low_complexity 1 21 0 569 191 37 48 chr15 75388109 75388297 -10307457 + MER53 DNA DNA 1 186 -3 207 250 119 24 chr15 75388378 75388462 -10307292 + MIR SINE MIR 122 213 -49 467 268 147 15 chr15 75389060 75389258 -10306496 - MIR SINE MIR -32 230 7 246 184 0 0 chr15 75390295 75390333 -10305421 - Alu SINE Alu -263 39 2 212 264 52 115 chr15 75391889 75392063 -10303691 + L2 LINE L2 2875 3037 -235 12174 129 8 37 chr15 75393303 75395319 -10300435 - Tigger1 DNA MER2_type -2 2416 460 207 0 0 0 chr15 75398543 75398566 -10297188 + (CA)n Simple_repeat Simple_repeat 2 24 0 259 311 55 55 chr15 75399404 75399697 -10296057 - L1ME4a LINE L1 -213 5908 5616 240 143 20 20 chr15 75400113 75400162 -10295592 - MIR SINE MIR 0 262 214 702 276 62 13 chr15 75401642 75401867 -10293887 + MIR SINE MIR 2 237 -25 399 56 0 0 chr15 75402549 75402603 -10293151 + (TG)n Simple_repeat Simple_repeat 1 54 0 3025 122 4 11 chr15 75404291 75404767 -10290987 + L1PA13 LINE L1 5687 6159 -4 384 123 0 0 chr15 75404798 75404871 -10290883 + (TA)n Simple_repeat Simple_repeat 2 74 0 214 163 0 41 chr15 75405035 75405084 -10290670 + T-rich Low_complexity Low_complexity 2 48 0 311 324 132 9 chr15 75405156 75405369 -10290385 - MIR SINE MIR -3 259 21 271 276 60 15 chr15 75405522 75405656 -10290098 + L1MC4 LINE L1 7759 7898 -144 321 240 0 0 chr15 75406337 75406433 -10289321 + C-rich Low_complexity Low_complexity 2 97 0 276 149 0 21 chr15 75406529 75406576 -10289178 - L2 LINE L2 -9 3263 3218 254 306 18 9 chr15 75407592 75407703 -10288051 + MER113 DNA MER1_type? 291 402 -119 477 254 66 0 chr15 75411243 75411365 -10284389 + MER103 DNA DNA 4 133 -33 214 282 47 12 chr15 75411632 75411717 -10284037 + MIR SINE MIR 86 173 -89 275 344 46 15 chr15 75411749 75411880 -10283874 - L2 LINE L2 -172 3100 2966 255 286 89 60 chr15 75413046 75413214 -10282540 + MIR SINE MIR 90 262 0 345 226 0 0 chr15 75416589 75416673 -10279081 + (TA)n Simple_repeat Simple_repeat 2 85 0 1515 273 128 25 chr15 75416708 75417217 -10278537 - MLT1E LTR MaLR -3 590 30 379 208 176 8 chr15 75417441 75417566 -10278188 + MLT1J1 LTR MaLR 22 167 -279 257 260 73 31 chr15 75417593 75417689 -10278065 + MLT1J2 LTR MaLR 267 366 -84 1970 125 0 17 chr15 75417689 75418002 -10277752 + AluSx SINE Alu 1 308 0 182 342 31 68 chr15 75418632 75418793 -10276961 - MIR SINE MIR -99 163 9 723 228 14 0 chr15 75419332 75419477 -10276277 - Tigger1 DNA MER2_type -2271 147 1 23 33 0 0 chr15 75419525 75419555 -10276199 + AT_rich Low_complexity Low_complexity 1 30 0 426 20 0 0 chr15 75419648 75419699 -10276055 + (CA)n Simple_repeat Simple_repeat 2 52 0 225 224 91 63 chr15 75420024 75420167 -10275587 + L1MEd LINE L1 48 194 -5925 1346 44 0 0 chr15 75420660 75420818 -10274936 - AluY SINE Alu -14 297 140 590 264 87 23 chr15 75421037 75421347 -10274407 + L1MEd LINE L1 896 1225 -4894 2061 159 83 24 chr15 75422229 75422638 -10273116 - Tigger2a DNA MER2_type 0 434 2 21 0 0 0 chr15 75422690 75422711 -10273043 + AT_rich Low_complexity Low_complexity 1 21 0 1215 116 74 81 chr15 75424035 75424096 -10271658 - Tigger3(Golem) DNA MER2_type -2 3027 2967 1780 107 4 0 chr15 75424096 75424330 -10271424 - AluSx SINE Alu -77 235 1 1215 116 74 81 chr15 75424330 75424526 -10271228 - Tigger3(Golem) DNA MER2_type -62 2967 2772 400 141 0 0 chr15 75424552 75424616 -10271138 - Tigger3(Golem) DNA MER2_type -2908 121 58 382 375 35 0 chr15 75424794 75424938 -10270816 + L2 LINE L2 3102 3250 -22 1402 250 15 0 chr15 75426409 75426745 -10269009 - MER58B DNA MER1_type 0 341 1 220 204 0 0 chr15 75427197 75427241 -10268513 + GA-rich Low_complexity Low_complexity 2 45 0 203 140 20 0 chr15 75429734 75429784 -10265970 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr15 75429789 75429810 -10265944 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 75429838 75429864 -10265890 + AT_rich Low_complexity Low_complexity 1 26 0 2229 122 0 0 chr15 75430618 75430930 -10264824 - AluSx SINE Alu 0 312 1 183 306 0 0 chr15 75431321 75431370 -10264384 - MIR SINE MIR -68 140 92 356 278 40 32 chr15 75431772 75431898 -10263856 + L2 LINE L2 3146 3272 0 309 344 90 0 chr15 75432149 75432271 -10263483 + MER5B DNA MER1_type 1 133 -45 183 100 0 0 chr15 75432271 75432301 -10263453 + (A)n Simple_repeat Simple_repeat 1 30 0 275 250 33 33 chr15 75432913 75433005 -10262749 + MLT1I LTR MaLR 318 409 0 884 139 72 0 chr15 75433148 75433328 -10262426 + L1MA7 LINE L1 6099 6291 0 2156 134 3 0 chr15 75433905 75434204 -10261550 + AluSq SINE Alu 1 300 -13 407 284 131 17 chr15 75434338 75434514 -10261240 - MIR SINE MIR -16 246 51 293 331 48 21 chr15 75434515 75434660 -10261094 - MER67A LTR ERV1 0 543 395 246 228 38 51 chr15 75434810 75434889 -10260865 - MER67B LTR ERV1 -538 123 46 489 191 198 8 chr15 75437852 75437978 -10257776 + MER5A DNA MER1_type 34 183 -6 221 372 22 33 chr15 75439200 75439383 -10256371 + MIR3 SINE MIR 15 195 -13 367 338 124 4 chr15 75441667 75441892 -10253862 - MIR SINE MIR -9 253 2 22 0 0 0 chr15 75441944 75441966 -10253788 + AT_rich Low_complexity Low_complexity 1 22 0 6320 122 26 11 chr15 75441970 75443183 -10252571 - L1MA3 LINE L1 -8 6297 5069 2287 182 5 7 chr15 75443490 75443935 -10251819 - L1MB3 LINE L1 -3 6180 5737 410 271 105 70 chr15 75444926 75445155 -10250599 + MIR SINE MIR 20 256 -6 225 224 0 0 chr15 75445844 75445902 -10249852 + (TA)n Simple_repeat Simple_repeat 1 58 0 582 303 91 72 chr15 75445993 75446454 -10249300 + L3 LINE CR1 454 928 -649 2174 80 6 54 chr15 75446454 75446768 -10248986 + AluY SINE Alu 1 299 -12 582 303 91 72 chr15 75446768 75446835 -10248919 + L3 LINE CR1 928 992 -585 22 0 0 0 chr15 75447012 75447034 -10248720 + AT_rich Low_complexity Low_complexity 1 22 0 271 275 83 8 chr15 75447094 75447214 -10248540 + HAL1b LINE L1 400 528 -820 2364 44 7 3 chr15 75447464 75447762 -10247992 - AluY SINE Alu -12 299 1 23 33 0 0 chr15 75448839 75448869 -10246885 + AT_rich Low_complexity Low_complexity 1 30 0 924 170 13 0 chr15 75448869 75449028 -10246726 - FRAM SINE Alu -16 160 1 203 269 269 10 chr15 75449767 75449871 -10245883 + L2 LINE L2 3136 3266 -6 193 308 92 25 chr15 75450468 75450588 -10245166 + MIR SINE MIR 16 143 -65 813 272 9 9 chr15 75451785 75452017 -10243737 - MLT1A2 LTR MaLR -3 371 140 2184 122 0 19 chr15 75452018 75452330 -10243424 + AluSq SINE Alu 1 306 -7 279 129 0 113 chr15 75452335 75452397 -10243357 - MLT1A2 LTR MaLR -319 55 1 222 306 24 59 chr15 75453057 75453142 -10242612 - L2 LINE L2 -2 3311 3230 246 62 0 0 chr15 75453888 75453920 -10241834 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 344 126 50 chr15 75454431 75455027 -10240727 + L2 LINE L2 2014 2654 -660 254 286 26 0 chr15 75455307 75455384 -10240370 - Charlie8 DNA MER1_type -2338 79 1 240 35 0 0 chr15 75455825 75455854 -10239900 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 54 0 0 chr15 75457640 75457677 -10238077 + AT_rich Low_complexity Low_complexity 1 37 0 340 218 40 32 chr15 75457935 75458059 -10237695 - L1ME4a LINE L1 -18 6103 5979 30 0 0 0 chr15 75458314 75458344 -10237410 + AT_rich Low_complexity Low_complexity 1 30 0 204 211 0 0 chr15 75458429 75458467 -10237287 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1563 201 0 26 chr15 75459480 75459793 -10235961 + AluJo SINE Alu 1 305 -7 248 272 206 70 chr15 75460287 75460515 -10235239 + MIR SINE MIR 2 260 -2 2198 104 10 7 chr15 75460638 75460937 -10234817 + AluSq SINE Alu 1 300 -13 865 169 0 7 chr15 75461029 75461171 -10234583 + AluJo SINE Alu 65 205 -107 211 296 111 0 chr15 75461186 75461267 -10234487 + MIR SINE MIR 119 208 -54 253 311 107 11 chr15 75461754 75461931 -10233823 + MLT1L LTR MaLR 400 593 -22 309 219 84 17 chr15 75462248 75462367 -10233387 - MIR SINE MIR -15 247 121 222 350 23 110 chr15 75462436 75462745 -10233009 + L2 LINE L2 2976 3257 -15 448 240 25 85 chr15 75463076 75463276 -10232478 + MLT1J LTR MaLR 9 196 -315 2337 101 0 0 chr15 75465468 75465764 -10229990 + AluSq SINE Alu 1 296 -17 361 198 162 18 chr15 75465962 75466073 -10229681 - MIR SINE MIR -106 156 30 26 30 0 0 chr15 75466226 75466259 -10229495 + AT_rich Low_complexity Low_complexity 1 33 0 460 189 0 0 chr15 75466753 75466843 -10228911 + MER94 DNA DNA 6 95 -39 312 351 97 52 chr15 75466868 75467250 -10228504 - L2 LINE L2 -511 2803 2405 461 299 65 52 chr15 75467295 75467619 -10228135 + L2 LINE L2 2981 3308 -5 2243 75 4 0 chr15 75471223 75471501 -10224253 + AluSc SINE Alu 8 286 -23 278 231 46 19 chr15 75471714 75471822 -10223932 - MER103 DNA DNA -53 113 3 193 319 69 26 chr15 75472385 75472501 -10223253 - MIR SINE MIR -69 139 19 296 149 50 174 chr15 75474550 75474671 -10221083 - MER5A DNA MER1_type -80 109 4 195 186 0 0 chr15 75475636 75475679 -10220075 + A-rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr15 75476728 75476773 -10218981 + (CA)n Simple_repeat Simple_repeat 1 45 0 297 306 90 35 chr15 75479293 75479437 -10216317 - L2 LINE L2 -886 2428 2277 273 252 156 74 chr15 75479621 75479756 -10215998 + L2 LINE L2 3156 3301 -12 2236 115 0 6 chr15 75480082 75480395 -10215359 + AluSx SINE Alu 1 311 -1 278 248 55 18 chr15 75480811 75480920 -10214834 - L1ME LINE L1 -271 5850 5738 471 290 27 16 chr15 75480926 75481112 -10214642 + LTR67 LTR ERVL 4 191 -366 263 267 129 0 chr15 75481302 75481403 -10214351 + LTR67 LTR ERVL 415 528 -29 207 0 0 0 chr15 75481403 75481426 -10214328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 331 252 91 77 chr15 75481718 75481870 -10213884 - L1ME LINE L1 -749 5397 5238 1798 160 3 61 chr15 75481870 75482183 -10213571 - AluJb SINE Alu -17 295 1 331 252 91 77 chr15 75482183 75482316 -10213438 - L1ME LINE L1 -908 5238 5108 346 171 26 13 chr15 75482789 75482865 -10212889 + MER116 DNA Mariner 4 80 0 5647 107 8 0 chr15 75484370 75485366 -10210388 - L1PB1 LINE L1 -3 6148 5143 606 142 94 0 chr15 75485726 75485832 -10209922 - AluJb SINE Alu -21 291 176 2224 84 11 0 chr15 75486073 75486358 -10209396 - AluSg1 SINE Alu -21 288 1 195 42 0 0 chr15 75486712 75486736 -10209018 + (A)n Simple_repeat Simple_repeat 1 24 0 2211 88 14 0 chr15 75486904 75487188 -10208566 + AluSp SINE Alu 1 288 -25 22 0 0 0 chr15 75488147 75488169 -10207585 + AT_rich Low_complexity Low_complexity 1 22 0 428 291 118 67 chr15 75488172 75488685 -10207069 + L1ME4a LINE L1 5160 5699 -471 2114 113 0 7 chr15 75488710 75489002 -10206752 + AluSx SINE Alu 18 307 -5 1016 191 69 20 chr15 75489021 75489303 -10206451 + L1MC2 LINE L1 6027 6326 -18 1361 204 100 0 chr15 75489303 75489573 -10206181 - AluJb SINE Alu -15 297 1 22 35 0 0 chr15 75489573 75489602 -10206152 + AT_rich Low_complexity Low_complexity 1 29 0 1914 199 39 15 chr15 75489852 75490264 -10205490 + MSTB LTR MaLR 1 422 -4 1918 121 61 10 chr15 75490277 75490574 -10205180 + AluSx SINE Alu 1 312 0 23 68 0 0 chr15 75492154 75492198 -10203556 + AT_rich Low_complexity Low_complexity 1 44 0 285 319 0 35 chr15 75492769 75492910 -10202844 + A-rich Low_complexity Low_complexity 4 139 0 280 344 5 5 chr15 75494269 75494458 -10201296 - L1ME LINE L1 -680 5490 5302 684 122 81 0 chr15 75494459 75494582 -10201172 - L1PB3 LINE L1 -3 6151 6019 2357 76 3 0 chr15 75494593 75494881 -10200873 - AluSc SINE Alu -8 301 13 246 231 170 32 chr15 75495192 75495474 -10200280 + L1M4 LINE L1 3060 3380 -2766 25 0 0 0 chr15 75496122 75496147 -10199607 + AT_rich Low_complexity Low_complexity 1 25 0 250 263 50 0 chr15 75496589 75496669 -10199085 + L1ME4a LINE L1 5843 5926 -195 300 305 52 78 chr15 75497513 75497667 -10198087 + L2 LINE L2 3119 3268 -4 22 0 0 0 chr15 75498482 75498504 -10197250 + AT_rich Low_complexity Low_complexity 1 22 0 187 262 24 95 chr15 75498507 75498591 -10197163 - L2 LINE L2 -1 3271 3194 451 284 0 0 chr15 75498655 75498771 -10196983 - MER117 DNA MER1_type -80 117 2 955 199 11 6 chr15 75500084 75500265 -10195489 + MER5A DNA MER1_type 2 183 -6 1593 189 3 17 chr15 75500436 75500732 -10195022 + AluJo SINE Alu 9 300 -12 319 321 128 28 chr15 75501690 75501939 -10193815 + L1ME LINE L1 224 497 -5573 276 291 9 86 chr15 75501974 75502184 -10193570 + L1ME LINE L1 466 659 -5424 3814 143 40 1 chr15 75502241 75502892 -10192862 - Tigger1 DNA MER2_type -6 2412 1737 994 288 86 21 chr15 75502901 75505008 -10190746 - L1MCc LINE L1 -4581 2541 25 401 139 0 70 chr15 75505443 75505529 -10190225 - MADE1 DNA Mariner 0 80 1 24 53 0 0 chr15 75505813 75505851 -10189903 + AT_rich Low_complexity Low_complexity 1 38 0 193 360 67 13 chr15 75506316 75506466 -10189288 + L2 LINE L2 2702 2859 -455 442 303 158 0 chr15 75507192 75507344 -10188410 + MER5A DNA MER1_type 13 188 -1 21 0 0 0 chr15 75508502 75508523 -10187231 + AT_rich Low_complexity Low_complexity 1 21 0 2124 124 9 18 chr15 75508747 75509078 -10186676 - THE1B LTR MaLR -36 328 1 11099 97 19 13 chr15 75509078 75510649 -10185105 - THE1B-int LTR MaLR 0 1580 1 2284 137 8 16 chr15 75510649 75511014 -10184740 - THE1B LTR MaLR 0 364 3 1501 206 0 33 chr15 75511247 75511548 -10184206 + AluJo SINE Alu 1 291 -21 1466 256 79 34 chr15 75511996 75512940 -10182814 - L1MCa LINE L1 -3364 3200 2217 1789 256 55 18 chr15 75512951 75513725 -10182029 - L1MCa LINE L1 -4595 2150 1160 1933 231 41 31 chr15 75513775 75514381 -10181373 - L1MCa LINE L1 -4852 1193 582 1600 283 12 42 chr15 75514517 75515087 -10180667 - L1MCa LINE L1 -5491 554 2 2276 114 0 0 chr15 75515125 75515423 -10180331 + AluSx SINE Alu 1 298 -14 29 47 0 0 chr15 75515991 75516034 -10179720 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr15 75517180 75517203 -10178551 + AT_rich Low_complexity Low_complexity 1 23 0 1231 133 85 0 chr15 75517643 75517854 -10177900 - MER30 DNA MER1_type -1 229 1 376 284 152 10 chr15 75519918 75520122 -10175632 - MIR SINE MIR -28 234 2 236 306 51 20 chr15 75521659 75521757 -10173997 - MIR SINE MIR -121 141 41 23 33 0 0 chr15 75522960 75522990 -10172764 + AT_rich Low_complexity Low_complexity 1 30 0 233 296 22 89 chr15 75523267 75523402 -10172352 - L2 LINE L2 -8 3264 3139 89 34 0 0 chr15 75523688 75523805 -10171949 + AT_rich Low_complexity Low_complexity 1 117 0 223 415 43 12 chr15 75524147 75524311 -10171443 + L2 LINE L2 3096 3264 -8 225 0 0 0 chr15 75524998 75525023 -10170731 + (TA)n Simple_repeat Simple_repeat 2 26 0 476 147 43 0 chr15 75525923 75526039 -10169715 + GA-rich Low_complexity Low_complexity 3 123 0 22 0 0 0 chr15 75526709 75526731 -10169023 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 75527210 75527239 -10168515 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr15 75527293 75527323 -10168431 + AT_rich Low_complexity Low_complexity 1 30 0 241 240 20 0 chr15 75527921 75527971 -10167783 + MER5B DNA MER1_type 3 53 -125 1744 172 0 38 chr15 75527971 75528291 -10167463 - AluJo SINE Alu -4 308 1 2320 264 71 12 chr15 75528292 75528561 -10167193 - L1MEc LINE L1 -2575 3640 3388 2114 111 7 10 chr15 75528561 75528879 -10166875 + AluSp SINE Alu 1 313 0 2320 264 71 12 chr15 75528879 75530043 -10165711 - L1MEc LINE L1 -2827 3388 2103 22 70 0 0 chr15 75530048 75530091 -10165663 + AT_rich Low_complexity Low_complexity 1 43 0 284 219 65 6 chr15 75530111 75530280 -10165474 + (TA)n Simple_repeat Simple_repeat 1 179 0 233 219 48 19 chr15 75530307 75530412 -10165342 + (TA)n Simple_repeat Simple_repeat 2 109 0 1791 199 74 0 chr15 75530600 75530966 -10164788 - MSTD LTR MaLR -3 393 1 488 312 43 37 chr15 75530985 75531312 -10164442 - L1MEc LINE L1 -4402 1994 1666 1995 271 83 37 chr15 75531362 75533782 -10161972 - L1MDa LINE L1 -3156 3384 851 500 267 85 86 chr15 75533881 75534363 -10161391 - L1MDa LINE L1 -5586 944 20 188 348 102 33 chr15 75534471 75534776 -10160978 - L2 LINE L2 -700 2614 2289 269 350 81 11 chr15 75535277 75535463 -10160291 - MIR SINE MIR -14 248 50 2018 208 20 81 chr15 75535779 75536332 -10159422 + LTR53 LTR ERVL 1 519 0 2105 140 132 5 chr15 75536414 75536793 -10158961 - MSTA LTR MaLR -1 427 1 539 291 13 60 chr15 75536970 75537204 -10158550 + MIR SINE MIR 3 225 -37 1432 153 226 17 chr15 75537454 75537808 -10157946 + MSTA LTR MaLR 1 428 0 217 109 43 22 chr15 75538329 75538375 -10157379 + (CACCC)n Simple_repeat Simple_repeat 1 47 0 421 289 72 49 chr15 75538620 75538883 -10156871 + LTR16A LTR ERVL 1 269 -181 29 0 0 0 chr15 75539316 75539345 -10156409 + AT_rich Low_complexity Low_complexity 1 29 0 1001 144 17 23 chr15 75540660 75540834 -10154920 + AluSc SINE Alu 103 275 -34 440 361 42 30 chr15 75541045 75541375 -10154379 - L2 LINE L2 -650 2664 2331 21 71 0 0 chr15 75542243 75542285 -10153469 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr15 75543424 75543452 -10152302 + AT_rich Low_complexity Low_complexity 1 28 0 287 367 160 6 chr15 75543510 75543679 -10152075 + MIR SINE MIR 13 207 -55 319 336 135 14 chr15 75544292 75544500 -10151254 + MIR SINE MIR 24 256 -6 880 289 83 62 chr15 75544843 75545308 -10150446 - L2 LINE L2 -4 3309 2828 1891 120 210 11 chr15 75545308 75545665 -10150089 - MSTA LTR MaLR 0 428 1 880 289 83 62 chr15 75545665 75545850 -10149904 - L2 LINE L2 -485 2828 2648 306 335 76 22 chr15 75545916 75546101 -10149653 + MIR SINE MIR 62 256 -6 2158 97 4 0 chr15 75546573 75546894 -10148860 - AluSg SINE Alu 0 328 7 213 37 0 0 chr15 75550123 75550150 -10145604 - MIR SINE MIR -152 110 84 30 0 0 0 chr15 75550268 75550298 -10145456 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 92 97 chr15 75550368 75550822 -10144932 + LTR67 LTR ERVL 97 548 -9 203 171 0 0 chr15 75551261 75551296 -10144458 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 25 83 0 0 chr15 75551502 75551562 -10144192 + AT_rich Low_complexity Low_complexity 1 60 0 2325 173 26 24 chr15 75551576 75552032 -10143722 - MLT1D LTR MaLR -15 490 34 387 306 214 12 chr15 75553323 75553650 -10142104 + L2 LINE L2 2921 3313 0 861 219 13 44 chr15 75553693 75553921 -10141833 - MER58A DNA MER1_type -2 222 2 462 315 130 13 chr15 75554320 75554628 -10141126 + MLT1I LTR MaLR 64 407 -2 2188 130 22 108 chr15 75554642 75554893 -10140861 - MSTB LTR MaLR 0 426 232 1518 75 0 0 chr15 75554893 75555080 -10140674 + U2 snRNA snRNA 1 187 -1 2188 130 22 108 chr15 75555080 75555290 -10140464 - MSTB LTR MaLR -194 232 5 2031 128 3 13 chr15 75555492 75555790 -10139964 + AluSx SINE Alu 1 295 -17 289 369 64 21 chr15 75555992 75556179 -10139575 + L2 LINE L2 3076 3270 -2 1053 158 0 0 chr15 75558052 75558274 -10137480 + (TA)n Simple_repeat Simple_repeat 1 222 0 1942 74 0 19 chr15 75558332 75558601 -10137153 + AluY SINE Alu 1 264 -47 183 42 0 0 chr15 75558610 75558634 -10137120 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1028 220 80 42 chr15 75558635 75558979 -10136775 - MLT2B1 LTR ERVL -73 343 1 1368 208 11 55 chr15 75559268 75559535 -10136219 + L1MA6 LINE L1 5949 6197 -103 1831 139 177 19 chr15 75559535 75559706 -10136048 - MSTB1 LTR MaLR 0 432 289 354 45 0 0 chr15 75559706 75559750 -10136004 + (GA)n Simple_repeat Simple_repeat 1 44 0 1831 139 177 19 chr15 75559750 75559951 -10135803 - MSTB1 LTR MaLR -143 289 1 1368 208 11 55 chr15 75559951 75560049 -10135705 + L1MA6 LINE L1 6197 6298 -2 297 151 0 0 chr15 75563030 75563083 -10132671 + T-rich Low_complexity Low_complexity 1 53 0 430 318 35 40 chr15 75564406 75564783 -10130971 + L1ME3 LINE L1 1428 1802 -4594 23 33 0 0 chr15 75564823 75564853 -10130901 + AT_rich Low_complexity Low_complexity 1 30 0 946 188 156 44 chr15 75564874 75565124 -10130630 - AluJo SINE Alu -14 298 21 816 287 103 66 chr15 75565331 75567032 -10128722 + L1ME3 LINE L1 2190 3917 -2298 1772 107 37 0 chr15 75567032 75567304 -10128450 + L1PA8 LINE L1 5887 6168 -4 816 287 103 66 chr15 75567304 75567385 -10128369 + L1ME3 LINE L1 3917 3994 -2221 513 243 34 19 chr15 75567382 75567588 -10128166 + L1ME3 LINE L1 5799 6007 -232 * 246 264 79 64 chr15 75567627 75567767 -10127987 + L1ME3 LINE L1 5995 6136 -95 2266 101 3 22 chr15 75568440 75568473 -10127281 - AluSx SINE Alu -2 310 278 279 0 0 0 chr15 75568473 75568504 -10127250 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2266 101 3 22 chr15 75568504 75568786 -10126968 - AluSx SINE Alu -34 278 1 273 98 0 0 chr15 75571890 75571931 -10123823 + (CA)n Simple_repeat Simple_repeat 2 42 0 346 96 19 0 chr15 75573561 75573613 -10122141 + MADE1 DNA Mariner 1 53 -27 205 320 53 0 chr15 75573953 75574028 -10121726 + MIR SINE MIR 113 191 -71 267 264 46 29 chr15 75574102 75574175 -10121579 + (CATATA)n Simple_repeat Simple_repeat 4 74 -106 2429 110 21 19 chr15 75574175 75574549 -10121205 - THE1C LTR MaLR 0 375 1 267 264 46 29 chr15 75574549 75574649 -10121105 + (CATATA)n Simple_repeat Simple_repeat 74 180 0 252 258 81 24 chr15 75574966 75575090 -10120664 - L1M4 LINE L1 -3683 2463 2333 4061 271 86 46 chr15 75575101 75575719 -10120035 - L1MEc LINE L1 -1200 5015 4423 1973 142 3 3 chr15 75575719 75576015 -10119739 + AluSx SINE Alu 1 296 -16 4061 271 86 46 chr15 75576015 75576631 -10119123 - L1MEc LINE L1 -1792 4423 3833 2168 131 0 13 chr15 75576631 75576945 -10118809 - AluSq SINE Alu -3 310 1 4061 271 86 46 chr15 75576945 75577196 -10118558 - L1MEc LINE L1 -2382 3833 3593 2159 98 3 0 chr15 75577196 75577483 -10118271 - AluSx SINE Alu -24 288 1 4061 271 86 46 chr15 75577483 75579228 -10116526 - L1MEc LINE L1 -2622 3593 1713 549 313 71 44 chr15 75580224 75580630 -10115124 + L1ME4a LINE L1 5547 5963 -158 302 146 0 0 chr15 75582892 75582940 -10112814 + AluS SINE Alu 37 84 -219 1630 129 15 42 chr15 75582940 75583240 -10112514 + AluSx SINE Alu 31 323 0 7118 45 4 12 chr15 75583695 75584335 -10111419 + L1PA5 LINE L1 4743 5386 -768 2710 16 7 0 chr15 75584335 75584639 -10111115 + AluY SINE Alu 1 306 -5 7118 45 4 12 chr15 75584639 75585410 -10110344 + L1PA5 LINE L1 5386 6150 -4 304 210 0 0 chr15 75586255 75586317 -10109437 - L2 LINE L2 -1 3312 3251 934 201 149 55 chr15 75587385 75587694 -10108060 - MLT1A1 LTR MaLR -8 357 20 22 70 0 0 chr15 75587694 75587737 -10108017 + AT_rich Low_complexity Low_complexity 1 43 0 1741 119 87 0 chr15 75587933 75588186 -10107568 - AluSx SINE Alu -35 277 3 249 316 0 0 chr15 75588754 75588830 -10106924 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 346 274 10 10 chr15 75589188 75589290 -10106464 + MIR3 SINE MIR 83 184 -24 2139 116 0 52 chr15 75589407 75589789 -10105965 - AluSx SINE Alu 0 365 1 464 303 60 38 chr15 75590450 75590717 -10105037 + L3b LINE CR1 1102 1374 -209 265 350 80 0 chr15 75591460 75591560 -10104194 + MIR SINE MIR 29 136 -126 364 344 123 6 chr15 75592005 75592168 -10103586 + MIR SINE MIR 47 228 -34 524 62 0 0 chr15 75593751 75593816 -10101938 + tRNA-Lys-AAG tRNA tRNA 12 76 0 5542 152 21 11 chr15 75593818 75594778 -10100976 - LTR5 LTR ERVK 0 969 1 1924 151 0 13 chr15 75595808 75596106 -10099648 + AluSx SINE Alu 3 296 -16 405 314 33 37 chr15 75596235 75596506 -10099248 - L1 LINE L1 -1596 4550 4281 887 222 0 31 chr15 75596645 75596870 -10098884 - L1MA9 LINE L1 -36 6276 6059 2316 109 0 0 chr15 75597230 75597542 -10098212 - AluSx SINE Alu 0 312 1 393 217 0 0 chr15 75599763 75599846 -10095908 - MER53 DNA DNA 0 189 107 748 298 59 21 chr15 75600167 75600405 -10095349 - MER119 DNA MER1_type -332 251 5 484 241 82 10 chr15 75600447 75600654 -10095100 - L1ME LINE L1 -688 5478 5257 207 354 92 12 chr15 75600765 75600929 -10094825 - MIR3 SINE MIR -7 201 25 377 109 0 0 chr15 75601037 75601092 -10094662 - Alu SINE Alu -3 298 244 25 0 0 0 chr15 75602659 75602684 -10093070 + AT_rich Low_complexity Low_complexity 1 25 0 218 360 53 0 chr15 75602955 75603030 -10092724 - MIR SINE MIR -1 261 183 200 268 0 0 chr15 75604774 75604815 -10090939 + polypurine Low_complexity Low_complexity 2 42 0 351 0 0 0 chr15 75605034 75605073 -10090681 + (CA)n Simple_repeat Simple_repeat 2 40 0 846 168 0 0 chr15 75605606 75605737 -10090017 + AluJ SINE Alu 3 133 -169 956 159 6 0 chr15 75605764 75605940 -10089814 + A-rich Low_complexity Low_complexity 3 179 0 870 183 7 0 chr15 75605947 75606089 -10089665 + AluJ SINE Alu 140 282 -30 196 199 8 0 chr15 75606154 75606199 -10089555 + MIR SINE MIR 110 157 -51 252 0 0 0 chr15 75607116 75607144 -10088610 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr15 75607560 75607590 -10088164 + AT_rich Low_complexity Low_complexity 1 30 0 226 380 40 40 chr15 75607797 75607997 -10087757 - L2 LINE L2 0 3272 3073 2000 97 38 28 chr15 75608214 75608503 -10087251 + AluSp SINE Alu 2 293 -20 260 365 60 26 chr15 75609863 75610096 -10085658 - L2 LINE L2 -173 3099 2859 317 365 41 12 chr15 75610105 75610275 -10085479 + L2 LINE L2 2488 2662 -652 2600 208 50 11 chr15 75610306 75610921 -10084833 - L1MB7 LINE L1 -14 6170 5532 491 318 134 47 chr15 75611292 75611758 -10083996 + L2 LINE L2 2767 3271 -1 229 364 73 18 chr15 75611766 75611986 -10083768 - L2 LINE L2 -459 2855 2624 23 33 0 0 chr15 75613318 75613348 -10082406 + AT_rich Low_complexity Low_complexity 1 30 0 282 29 0 0 chr15 75613647 75613682 -10082072 + (TC)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr15 75613684 75613710 -10082044 + (CA)n Simple_repeat Simple_repeat 1 26 0 410 281 106 74 chr15 75614475 75615061 -10080693 + L1ME3A LINE L1 1105 1716 -4680 1804 160 24 3 chr15 75615061 75615348 -10080406 + AluSx SINE Alu 1 293 -19 410 281 106 74 chr15 75615348 75615413 -10080341 + L1ME3A LINE L1 1716 1777 -4619 21 0 0 0 chr15 75615691 75615712 -10080042 + AT_rich Low_complexity Low_complexity 1 21 0 832 297 83 40 chr15 75615925 75616454 -10079300 + L1ME3A LINE L1 2423 3011 -3204 2120 126 3 7 chr15 75616454 75616755 -10078999 - AluSq SINE Alu -13 300 1 832 297 83 40 chr15 75616755 75617150 -10078604 + L1ME3A LINE L1 3011 3387 -2828 * 1170 274 70 17 chr15 75617133 75617615 -10078139 + L1ME3A LINE L1 5723 6230 -9 277 213 0 0 chr15 75617846 75617893 -10077861 + 5S rRNA rRNA 1 47 -74 2040 107 57 4 chr15 75617979 75618260 -10077494 + AluSx SINE Alu 3 298 -14 185 267 14 14 chr15 75618303 75618449 -10077305 + (TA)n Simple_repeat Simple_repeat 1 146 0 543 323 56 43 chr15 75618908 75619398 -10076356 - L1MC/D LINE L1 -406 5715 5264 361 251 28 43 chr15 75620686 75620810 -10074944 + L1MC/D LINE L1 5479 5608 -2177 2294 110 0 3 chr15 75620845 75621155 -10074599 + AluSg SINE Alu 1 309 -1 410 315 105 63 chr15 75621629 75622134 -10073620 - HAL1b LINE L1 -661 687 162 29 0 0 0 chr15 75622924 75622953 -10072801 + AT_rich Low_complexity Low_complexity 1 29 0 2032 81 7 7 chr15 75622953 75623237 -10072517 - L1PA8 LINE L1 -2 6170 5887 550 335 36 29 chr15 75623627 75624133 -10071621 - HERV16 LTR ERVL -1773 3881 3336 775 296 130 8 chr15 75624618 75625003 -10070751 - HERV16 LTR ERVL -3654 1342 911 1505 96 20 5 chr15 75625355 75625554 -10070200 - AluSx SINE Alu -110 202 1 303 335 118 20 chr15 75625582 75625886 -10069868 - LTR16A LTR ERVL -95 355 22 4004 162 59 28 chr15 75626214 75626283 -10069471 + L1MA4 LINE L1 5429 5494 -806 2224 109 10 0 chr15 75626283 75626587 -10069167 + AluSq SINE Alu 7 313 0 4004 162 59 28 chr15 75626587 75627363 -10068391 + L1MA4 LINE L1 5494 6300 0 227 352 11 0 chr15 75627372 75627460 -10068294 - MIR3 SINE MIR -6 202 114 846 210 6 0 chr15 75627505 75627686 -10068068 + MER53 DNA DNA 1 182 -7 21 0 0 0 chr15 75627864 75627885 -10067869 + AT_rich Low_complexity Low_complexity 1 21 0 599 213 39 92 chr15 75627956 75628057 -10067697 - MER112 DNA MER1_type -6 254 168 1868 158 3 7 chr15 75628057 75628360 -10067394 + AluSx SINE Alu 2 303 -9 599 213 39 92 chr15 75628360 75628465 -10067289 - MER112 DNA MER1_type -92 168 59 1915 148 3 7 chr15 75628701 75628998 -10066756 + AluSx SINE Alu 1 296 -16 1493 211 0 13 chr15 75629635 75629933 -10065821 + AluJo SINE Alu 1 294 -18 21 0 0 0 chr15 75630155 75630176 -10065578 + AT_rich Low_complexity Low_complexity 1 21 0 211 327 136 12 chr15 75630964 75631126 -10064628 - MIR SINE MIR -50 212 31 555 190 99 16 chr15 75631452 75631573 -10064181 + MER94 DNA DNA 1 131 -3 366 23 0 0 chr15 75632617 75632660 -10063094 + (CA)n Simple_repeat Simple_repeat 2 44 0 215 319 75 0 chr15 75633228 75633322 -10062432 - MIR SINE MIR -109 153 53 228 111 0 0 chr15 75635610 75635646 -10060108 + (TG)n Simple_repeat Simple_repeat 1 36 0 435 296 198 49 chr15 75636205 75636553 -10059201 - L2 LINE L2 -1 3271 2872 2381 80 0 22 chr15 75637660 75637972 -10057782 + AluY SINE Alu 1 305 -6 366 23 0 0 chr15 75639318 75639361 -10056393 + (CA)n Simple_repeat Simple_repeat 1 43 0 1909 142 3 22 chr15 75640491 75640802 -10054952 - AluJb SINE Alu -6 306 2 1114 156 0 0 chr15 75641251 75641576 -10054178 + AluSx SINE Alu 1 325 0 535 276 26 37 chr15 75642160 75642432 -10053322 - L1ME4a LINE L1 -289 5832 5564 200 213 16 0 chr15 75644558 75644619 -10051135 + (TA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr15 75646051 75646079 -10049675 + AT_rich Low_complexity Low_complexity 1 28 0 249 197 0 0 chr15 75646886 75646947 -10048807 + (ATG)n Simple_repeat Simple_repeat 2 62 0 368 182 0 57 chr15 75646966 75647054 -10048700 - MIR SINE MIR -26 236 154 30 45 0 0 chr15 75647243 75647287 -10048467 + AT_rich Low_complexity Low_complexity 1 44 0 288 295 171 0 chr15 75647428 75647533 -10048221 - L2 LINE L2 -1 3271 3149 448 262 48 14 chr15 75647736 75647881 -10047873 + MIR SINE MIR 101 250 -12 290 250 160 20 chr15 75649558 75649658 -10046096 - MIR3 SINE MIR -52 156 43 3161 22 0 0 chr15 75650827 75651193 -10044561 - L1PA2 LINE L1 -2 6153 5788 2191 111 0 0 chr15 75651193 75651482 -10044272 - AluSx SINE Alu -23 289 1 1632 125 41 24 chr15 75653855 75654150 -10041604 + L1MA2 LINE L1 5998 6297 -7 21 0 0 0 chr15 75654150 75654171 -10041583 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr15 75655719 75655751 -10040003 + AT_rich Low_complexity Low_complexity 1 32 0 879 102 40 17 chr15 75656192 75656368 -10039386 + CT-rich Low_complexity Low_complexity 1 180 0 2157 106 30 0 chr15 75656374 75656816 -10038938 - AluSp SINE Alu 0 451 1 244 327 20 27 chr15 75657388 75657538 -10038216 + MER5B DNA MER1_type 1 149 -29 4950 161 21 20 chr15 75657569 75658530 -10037224 - L1MA8 LINE L1 -28 6263 5302 5533 228 40 64 chr15 75660312 75661754 -10034000 + L1ME4a LINE L1 2750 4120 -2026 1359 201 50 25 chr15 75661754 75662037 -10033717 + AluJo SINE Alu 5 294 -18 5533 228 40 64 chr15 75662037 75662846 -10032908 + L1ME4a LINE L1 4120 4947 -1199 2493 191 139 20 chr15 75662821 75663459 -10032295 + L1MC3 LINE L1 7054 7767 -18 * 27 0 0 0 chr15 75663585 75663612 -10032142 + AT_rich Low_complexity Low_complexity 1 27 0 189 312 81 98 chr15 75664063 75664297 -10031457 - L2 LINE L2 0 3272 3043 365 294 188 18 chr15 75664841 75665117 -10030637 + L1ME4a LINE L1 5782 6104 -17 293 212 15 15 chr15 75668634 75668700 -10027054 - L2 LINE L2 -1 3312 3247 269 330 43 0 chr15 75669167 75669261 -10026493 + L2 LINE L2 3175 3272 0 459 35 0 0 chr15 75669662 75669719 -10026035 + (ATG)n Simple_repeat Simple_repeat 2 58 0 28 0 0 0 chr15 75670063 75670091 -10025663 + AT_rich Low_complexity Low_complexity 1 28 0 2178 119 0 19 chr15 75673015 75673333 -10022421 + AluSq SINE Alu 1 312 -1 200 163 23 0 chr15 75673394 75673437 -10022317 + GA-rich Low_complexity Low_complexity 3 46 0 1930 152 16 7 chr15 75673760 75674069 -10021685 + AluSx SINE Alu 1 312 0 419 273 41 0 chr15 75674530 75674651 -10021103 + MLT1J2 LTR MaLR 37 162 -288 492 163 0 0 chr15 75674798 75674878 -10020876 + AluS SINE Alu 1 80 -233 333 267 163 0 chr15 75675361 75675447 -10020307 + MER91C DNA MER1_type 24 123 -17 265 306 0 0 chr15 75676647 75676719 -10019035 - MIR SINE MIR -8 254 183 236 347 54 48 chr15 75676720 75676867 -10018887 - L2 LINE L2 -2 3270 3123 257 337 121 21 chr15 75679942 75680132 -10015622 - MLT1I LTR MaLR -198 211 3 829 234 35 93 chr15 75680405 75680781 -10014973 - HsTC2 DNA Tc2 0 1898 1545 269 206 0 110 chr15 75680778 75680851 -10014903 - MER66B LTR ERV1 -12 474 410 * 1432 154 39 4 chr15 75680818 75681077 -10014677 - MER41B LTR ERV1 -38 597 330 1832 105 13 53 chr15 75681078 75681382 -10014372 - LTR12 LTR ERV1 -236 478 187 247 231 0 0 chr15 75681402 75681454 -10014300 - LTR30 LTR ERV1 -670 52 1 1100 176 10 0 chr15 75681459 75681658 -10014096 - MER41B LTR ERV1 -305 330 130 995 249 60 14 chr15 75681682 75681967 -10013787 - HsTC2 DNA Tc2 -336 1562 1265 445 317 42 0 chr15 75681964 75682106 -10013648 - HsTC2 DNA Tc2 -1750 148 1 * 264 257 68 0 chr15 75682111 75682185 -10013569 - MIR SINE MIR -11 251 173 454 189 98 39 chr15 75683309 75683462 -10012292 - L1ME4a LINE L1 -6 6115 5954 22 0 0 0 chr15 75685110 75685132 -10010622 + AT_rich Low_complexity Low_complexity 1 22 0 243 265 76 43 chr15 75685990 75686157 -10009597 - MIR SINE MIR -46 216 43 220 313 99 15 chr15 75686651 75686782 -10008972 + MIR SINE MIR 67 208 -54 180 231 39 0 chr15 75687075 75687127 -10008627 - MIR SINE MIR -39 223 170 2332 60 0 48 chr15 75687853 75688167 -10007587 + AluY SINE Alu 1 299 -12 330 26 0 0 chr15 75688385 75688415 -10007339 + (TG)n Simple_repeat Simple_repeat 1 69 0 330 26 0 0 chr15 75688415 75688454 -10007300 + (TG)n Simple_repeat Simple_repeat 2 40 0 387 41 0 0 chr15 75689936 75689985 -10005769 + (TG)n Simple_repeat Simple_repeat 2 50 0 181 320 124 62 chr15 75691158 75691624 -10004130 - L2 LINE L2 -358 2956 2462 26 50 0 0 chr15 75692558 75692598 -10003156 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr15 75694584 75694616 -10001138 + AT_rich Low_complexity Low_complexity 1 32 0 2294 108 3 9 chr15 75696735 75697050 -9998704 + AluSp SINE Alu 1 313 0 394 256 17 57 chr15 75697482 75697658 -9998096 - L1ME LINE L1 -440 5681 5513 364 369 72 25 chr15 75697757 75697993 -9997761 - MIR SINE MIR -13 249 3 198 125 0 0 chr15 75699086 75699118 -9996636 - L2 LINE L2 0 3313 3282 212 289 0 0 chr15 75699365 75699410 -9996344 + L3 LINE CR1 1514 1558 -19 4541 176 40 5 chr15 75700395 75701231 -9994523 - MER6 DNA MER2_type 0 865 1 213 257 40 40 chr15 75701651 75701725 -9994029 - MIR SINE MIR -159 103 30 203 347 110 12 chr15 75701816 75701989 -9993765 - L2 LINE L2 -898 2416 2227 2333 119 0 3 chr15 75702215 75702527 -9993227 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr15 75702764 75702795 -9992959 + AT_rich Low_complexity Low_complexity 1 31 0 2289 103 0 7 chr15 75702940 75703240 -9992514 + AluSc SINE Alu 1 298 -11 431 301 30 40 chr15 75703541 75703843 -9991911 + MLT1J LTR MaLR 10 308 -203 228 268 14 14 chr15 75704010 75704081 -9991673 + (TATG)n Simple_repeat Simple_repeat 2 72 0 691 226 12 18 chr15 75705489 75705653 -9990101 - MER20 DNA MER1_type 0 219 57 307 253 71 10 chr15 75705779 75705878 -9989876 + MIR SINE MIR 110 214 -48 2050 121 3 7 chr15 75707918 75708223 -9987531 + AluY SINE Alu 1 304 -7 216 0 0 0 chr15 75708649 75708673 -9987081 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr15 75710810 75710833 -9984921 + AT_rich Low_complexity Low_complexity 1 23 0 293 323 133 13 chr15 75710851 75711009 -9984745 - MIR SINE MIR -50 212 36 236 266 0 0 chr15 75711553 75711617 -9984137 + L2 LINE L2 3250 3313 0 769 258 43 10 chr15 75712934 75713143 -9982611 + MIR SINE MIR 33 248 -14 356 219 32 8 chr15 75713392 75713515 -9982239 + GA-rich Low_complexity Low_complexity 4 129 0 198 0 0 0 chr15 75713515 75713537 -9982217 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 268 301 53 26 chr15 75714143 75714256 -9981498 + L2 LINE L2 3154 3269 -3 2441 301 72 30 chr15 75717141 75718005 -9977749 - L2 LINE L2 -2 3311 2369 785 196 0 0 chr15 75718005 75718138 -9977616 + FLAM_A SINE Alu 1 133 0 2441 301 72 30 chr15 75718138 75718554 -9977200 - L2 LINE L2 -944 2369 1972 783 290 74 20 chr15 75718684 75718843 -9976911 - L2 LINE L2 -1668 1646 1497 2481 117 6 6 chr15 75718843 75719203 -9976551 - THE1B LTR MaLR -4 360 1 783 290 74 20 chr15 75719203 75719340 -9976414 - L2 LINE L2 -1817 1497 1334 181 149 40 27 chr15 75721131 75721205 -9974549 + (TA)n Simple_repeat Simple_repeat 1 75 0 34 55 0 0 chr15 75721217 75721272 -9974482 + AT_rich Low_complexity Low_complexity 1 55 0 1093 155 0 0 chr15 75723398 75723566 -9972188 + AluSg/x SINE Alu 144 311 -1 327 328 103 0 chr15 75723815 75723931 -9971823 - L2 LINE L2 -18 3254 3127 688 200 0 0 chr15 75724175 75724300 -9971454 - FRAM SINE Alu -10 166 42 1698 209 35 11 chr15 75724307 75724684 -9971070 + MLT1B LTR MaLR 4 389 -1 193 306 54 18 chr15 75724699 75724810 -9970944 - L2 LINE L2 -259 3054 2940 229 236 18 0 chr15 75726491 75726546 -9969208 + L2 LINE L2 3258 3313 0 2196 106 3 17 chr15 75727052 75727354 -9968400 - AluSp SINE Alu -15 298 1 350 170 196 27 chr15 75727381 75727493 -9968261 - MLT1H LTR MaLR 0 549 419 898 247 115 78 chr15 75728059 75728484 -9967270 + MLT1H LTR MaLR 109 549 0 2016 143 3 3 chr15 75728634 75728935 -9966819 - AluSx SINE Alu -11 301 1 23 0 0 0 chr15 75729164 75729187 -9966567 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr15 75729934 75729962 -9965792 + AT_rich Low_complexity Low_complexity 1 28 0 325 279 143 0 chr15 75730053 75730193 -9965561 + MER5A DNA MER1_type 30 189 0 414 336 76 29 chr15 75730226 75730645 -9965109 + L1ME1 LINE L1 2755 3193 -2953 29 84 0 0 chr15 75730674 75730745 -9965009 + AT_rich Low_complexity Low_complexity 1 71 0 383 326 78 43 chr15 75730936 75731258 -9964496 + L1ME1 LINE L1 3607 3939 -2207 1832 128 36 43 chr15 75731721 75732026 -9963728 - AluSx SINE Alu -9 303 1 322 338 68 15 chr15 75732386 75732649 -9963105 + L1ME1 LINE L1 4426 4702 -1444 2020 207 82 35 chr15 75732670 75733333 -9962421 + L1ME1 LINE L1 5213 5916 -250 1560 156 24 52 chr15 75733570 75733889 -9961865 + AluJo SINE Alu 3 313 0 523 181 8 8 chr15 75734272 75734399 -9961355 + GA-rich Low_complexity Low_complexity 4 130 0 2127 91 4 4 chr15 75735336 75735610 -9960144 - AluSq SINE Alu -19 294 21 448 265 148 6 chr15 75735729 75735891 -9959863 - MER5A DNA MER1_type -4 185 1 2194 116 7 0 chr15 75736075 75736369 -9959385 - AluSx SINE Alu -12 300 5 298 196 27 80 chr15 75736798 75736862 -9958892 + MER69 DNA AcHobo 42 99 -2427 2141 126 33 38 chr15 75736862 75737228 -9958526 - THE1B LTR MaLR 0 364 1 298 196 27 80 chr15 75737228 75737275 -9958479 + MER69 DNA AcHobo 99 147 -2379 793 294 69 69 chr15 75738718 75739212 -9956542 + MLT1J LTR MaLR 11 504 -7 22 35 0 0 chr15 75739488 75739517 -9956237 + AT_rich Low_complexity Low_complexity 1 29 0 1637 186 0 32 chr15 75739723 75740034 -9955720 - AluJo SINE Alu -11 301 1 5611 140 38 21 chr15 75740437 75741569 -9954185 + L1MC1 LINE L1 5181 6333 0 201 175 0 0 chr15 75741791 75741831 -9953923 + GA-rich Low_complexity Low_complexity 2 41 0 2873 3 0 0 chr15 75742643 75742948 -9952806 + AluY SINE Alu 1 305 -6 247 344 163 0 chr15 75744204 75744364 -9951390 - MIR SINE MIR -12 250 65 249 108 0 0 chr15 75744614 75744651 -9951103 + (TG)n Simple_repeat Simple_repeat 1 37 0 1748 181 14 0 chr15 75745348 75745641 -9950113 + AluJb SINE Alu 3 299 -13 423 0 0 0 chr15 75746447 75746494 -9949260 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr15 75749479 75749507 -9946247 + AT_rich Low_complexity Low_complexity 1 28 0 944 90 0 23 chr15 75749766 75749899 -9945855 - AluSq/x SINE Alu -181 132 3 1946 146 16 7 chr15 75750394 75750703 -9945051 + AluSx SINE Alu 1 312 0 240 241 0 0 chr15 75750874 75750928 -9944826 + MIR SINE MIR 194 247 -15 240 35 0 0 chr15 75750928 75750957 -9944797 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1005 225 88 85 chr15 75751548 75751971 -9943783 - MLT1A1 LTR MaLR 0 365 5 204 214 0 0 chr15 75752258 75752314 -9943440 + (TG)n Simple_repeat Simple_repeat 1 56 0 324 311 51 10 chr15 75752883 75753025 -9942729 - MIR SINE MIR -62 146 22 22 56 0 0 chr15 75754114 75754150 -9941604 + AT_rich Low_complexity Low_complexity 1 36 0 191 349 35 0 chr15 75756746 75756832 -9938922 + L2 LINE L2 3188 3276 -37 2047 136 0 13 chr15 75757403 75757711 -9938043 + AluJb SINE Alu 7 310 -2 1491 209 68 0 chr15 75758229 75758521 -9937233 - AluJb SINE Alu 0 312 1 251 330 10 10 chr15 75758650 75758747 -9937007 - MIR SINE MIR 0 262 166 1990 168 77 3 chr15 75758755 75759094 -9936660 + MLT1A1 LTR MaLR 2 365 0 1096 211 33 9 chr15 75761541 75761754 -9934000 - MER20 DNA MER1_type -1 218 1 344 184 0 0 chr15 75762099 75762148 -9933606 - MER20 DNA MER1_type -166 53 5 499 237 57 57 chr15 75762188 75762382 -9933372 + L1MD3 LINE L1 7788 7981 -14 409 128 14 64 chr15 75762759 75762900 -9932854 + GA-rich Low_complexity Low_complexity 2 135 0 2403 96 0 0 chr15 75763648 75763961 -9931793 - AluSq SINE Alu 0 313 1 221 350 51 33 chr15 75764120 75764302 -9931452 - MIR SINE MIR -66 142 3 283 78 39 0 chr15 75766516 75766567 -9929187 + (TG)n Simple_repeat Simple_repeat 1 53 0 883 266 96 31 chr15 75767744 75768131 -9927623 + MLT1J2 LTR MaLR 9 420 -30 230 293 85 12 chr15 75769290 75769372 -9926382 + MIR3 SINE MIR 87 174 -34 761 272 89 4 chr15 75770206 75770441 -9925313 - MIR SINE MIR 0 262 8 441 246 8 37 chr15 75770902 75771036 -9924718 + MER94 DNA DNA 5 134 0 292 298 122 8 chr15 75771626 75771757 -9923997 - L2 LINE L2 -1 3312 3167 359 337 72 75 chr15 75771839 75772069 -9923685 - L2 LINE L2 -1 3312 3083 1010 240 4 27 chr15 75772069 75772294 -9923460 + MER58A DNA MER1_type 2 221 -3 359 337 72 75 chr15 75772294 75772830 -9922924 - L2 LINE L2 -230 3083 2555 199 354 40 30 chr15 75773704 75773803 -9921951 - MIR SINE MIR -93 115 16 224 152 0 65 chr15 75774852 75774898 -9920856 + MIR SINE MIR 106 148 -114 3046 228 135 8 chr15 75776062 75776733 -9919021 - MER21B LTR ERV1 -1 862 81 180 0 0 0 chr15 75776733 75776753 -9919001 + (CA)n Simple_repeat Simple_repeat 1 20 0 3046 228 135 8 chr15 75776753 75776844 -9918910 - MER21B LTR ERV1 -782 81 3 290 343 76 51 chr15 75776921 75777236 -9918518 - L2 LINE L2 -337 2977 2655 217 319 22 59 chr15 75777975 75778110 -9917644 - MIR3 SINE MIR -65 143 14 397 306 38 51 chr15 75778850 75779007 -9916747 + L2 LINE L2 3159 3313 0 464 210 217 32 chr15 75779953 75780110 -9915644 + MER5A DNA MER1_type 4 189 0 203 286 36 0 chr15 75785045 75785101 -9910653 - MIR3 SINE MIR -8 200 143 281 264 11 35 chr15 75785637 75785724 -9910030 + L2 LINE L2 3225 3309 -4 309 347 27 20 chr15 75785725 75785872 -9909882 - MIR3 SINE MIR -59 149 2 345 93 0 0 chr15 75786428 75786482 -9909272 + (CA)n Simple_repeat Simple_repeat 1 54 0 327 25 0 0 chr15 75787899 75787939 -9907815 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr15 75790955 75790978 -9904776 + AT_rich Low_complexity Low_complexity 1 23 0 359 318 41 61 chr15 75791514 75791759 -9903995 + MIR SINE MIR 9 248 -14 1359 133 5 0 chr15 75791911 75792114 -9903640 + L1PA13 LINE L1 5957 6160 -3 307 318 56 0 chr15 75792265 75792391 -9903363 - MIR SINE MIR -15 247 115 3473 189 44 25 chr15 75792785 75793582 -9902172 + L1MB5 LINE L1 5363 6174 0 1734 106 4 55 chr15 75795659 75795934 -9899820 - AluSx SINE Alu -13 299 39 2351 63 0 14 chr15 75796744 75797063 -9898691 + AluY SINE Alu 1 315 0 300 247 51 123 chr15 75797072 75797393 -9898361 - L2 LINE L2 -290 3023 2723 1198 156 0 88 chr15 75797944 75798182 -9897572 + AluJb SINE Alu 85 301 -11 209 186 34 0 chr15 75799333 75799392 -9896362 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 2094 144 0 0 chr15 75799545 75799843 -9895911 - AluSx SINE Alu -14 298 1 26 50 0 0 chr15 75800632 75800672 -9895082 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 75800794 75800818 -9894936 + (TA)n Simple_repeat Simple_repeat 2 25 0 351 157 0 0 chr15 75801147 75801217 -9894537 + (TG)n Simple_repeat Simple_repeat 1 70 0 263 274 0 0 chr15 75804076 75804138 -9891616 - MIR SINE MIR -119 143 82 1503 146 127 11 chr15 75804146 75804421 -9891333 + AluSg1 SINE Alu 3 309 0 475 309 81 44 chr15 75804701 75805109 -9890645 + L2 LINE L2 2848 3270 -43 808 142 130 30 chr15 75805753 75805778 -9889976 + MSTB LTR MaLR 186 207 -219 459 35 0 0 chr15 75805778 75805835 -9889919 + (TC)n Simple_repeat Simple_repeat 1 57 0 808 142 130 30 chr15 75805835 75805978 -9889776 + MSTB LTR MaLR 207 371 -55 252 188 0 0 chr15 75805980 75806028 -9889726 + A-rich Low_complexity Low_complexity 1 48 0 1902 124 28 14 chr15 75806147 75806437 -9889317 + AluSq SINE Alu 1 294 -19 354 67 11 67 chr15 75806437 75806526 -9889228 + (GGGGA)n Simple_repeat Simple_repeat 3 86 0 282 289 67 26 chr15 75807911 75808045 -9887709 + MIR SINE MIR 37 174 -57 206 146 42 0 chr15 75809197 75809245 -9886509 + A-rich Low_complexity Low_complexity 5 54 0 21 36 0 0 chr15 75811532 75811560 -9884194 + AT_rich Low_complexity Low_complexity 1 28 0 230 303 10 0 chr15 75812012 75812111 -9883643 + GA-rich Low_complexity Low_complexity 2 101 0 310 308 28 19 chr15 75812864 75812971 -9882783 + MIR SINE MIR 124 231 -31 192 77 0 0 chr15 75813451 75813477 -9882277 + (T)n Simple_repeat Simple_repeat 1 26 0 261 311 10 39 chr15 75813611 75813714 -9882040 - MIR SINE MIR -8 254 155 471 308 98 29 chr15 75814249 75814564 -9881190 - L1ME4a LINE L1 -244 5877 5541 216 163 0 0 chr15 75815334 75815377 -9880377 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 721 226 58 82 chr15 75815641 75815898 -9879856 + MIR SINE MIR 12 262 0 267 79 0 0 chr15 75816359 75816397 -9879357 + (TG)n Simple_repeat Simple_repeat 1 38 0 282 136 0 0 chr15 75818580 75818624 -9877130 - MER103 DNA DNA -66 100 57 24 53 0 0 chr15 75818776 75818814 -9876940 + AT_rich Low_complexity Low_complexity 1 38 0 300 27 0 0 chr15 75819599 75819636 -9876118 + (CA)n Simple_repeat Simple_repeat 2 38 0 297 244 221 38 chr15 75820145 75820276 -9875478 + MIR3 SINE MIR 16 170 -38 334 220 92 64 chr15 75820368 75820477 -9875277 - L2 LINE L2 -10 3303 3192 193 286 43 29 chr15 75822088 75822158 -9873596 - MIR3 SINE MIR -33 175 105 2221 89 48 0 chr15 75823051 75823344 -9872410 + AluSg SINE Alu 1 307 -3 201 364 91 0 chr15 75823384 75823494 -9872260 - L2 LINE L2 -2 3270 3151 216 86 0 0 chr15 75823955 75823990 -9871764 + (CA)n Simple_repeat Simple_repeat 2 36 0 2405 87 0 0 chr15 75824521 75824821 -9870933 + AluSg SINE Alu 1 300 -10 1395 126 0 0 chr15 75825605 75825803 -9869951 - AluSg/x SINE Alu 0 312 115 429 70 0 0 chr15 75826216 75826273 -9869481 + (CA)n Simple_repeat Simple_repeat 1 57 0 342 291 146 12 chr15 75826329 75826494 -9869260 - MIR SINE MIR -27 235 49 3883 185 13 42 chr15 75828468 75829376 -9866378 - L1MB5 LINE L1 -8 6166 5285 374 341 56 0 chr15 75829488 75829667 -9866087 + MIR SINE MIR 47 235 -27 194 237 0 68 chr15 75829637 75829696 -9866058 + L2 LINE L2 3210 3264 -8 * 182 220 34 34 chr15 75832264 75832323 -9863431 + L3 LINE CR1 1275 1333 -244 1740 128 83 3 chr15 75833999 75834288 -9861466 + AluSx SINE Alu 1 312 0 526 40 40 0 chr15 75834291 75834367 -9861387 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 330 265 0 12 chr15 75834426 75834509 -9861245 + MIR SINE MIR 70 151 -111 239 312 25 102 chr15 75836534 75836691 -9859063 - MIR3 SINE MIR -3 205 61 22 35 0 0 chr15 75837421 75837450 -9858304 + AT_rich Low_complexity Low_complexity 1 29 0 279 279 58 0 chr15 75837602 75837688 -9858066 + MIR SINE MIR 102 192 -70 233 323 232 15 chr15 75837886 75838084 -9857670 - L3 LINE CR1 -355 1222 982 2122 137 30 33 chr15 75838807 75839172 -9856582 - THE1B LTR MaLR 0 364 1 248 320 172 16 chr15 75839466 75839588 -9856166 + L2 LINE L2 3169 3309 -4 591 231 0 21 chr15 75840440 75840583 -9855171 + FLAM_C SINE Alu 3 142 -1 227 179 103 0 chr15 75840776 75840854 -9854900 - MER104 DNA Tc2 -72 108 23 2398 103 0 3 chr15 75840857 75841167 -9854587 + AluSg1 SINE Alu 1 309 0 2367 69 3 10 chr15 75841432 75841735 -9854019 - AluY SINE Alu -10 301 1 327 293 98 93 chr15 75842526 75842751 -9853003 - MIR SINE MIR -17 245 20 3851 156 42 4 chr15 75843356 75844053 -9851701 + L1MC1 LINE L1 5603 6325 -8 1906 161 0 13 chr15 75844053 75844357 -9851397 + AluJo SINE Alu 1 300 -12 1077 90 0 0 chr15 75845659 75845792 -9849962 + AluSx SINE Alu 1 133 -179 1339 30 0 0 chr15 75845794 75845960 -9849794 - L1P2 LINE L1 -335 5820 5655 230 0 0 0 chr15 75845961 75845990 -9849764 + L1PA3 LINE L1 6114 6142 -13 1035 127 0 19 chr15 75845995 75846153 -9849601 + AluSx SINE Alu 119 273 -37 180 0 0 0 chr15 75848640 75848660 -9847094 + (TG)n Simple_repeat Simple_repeat 2 21 0 1545 227 40 45 chr15 75848660 75849055 -9846699 + L1MB7 LINE L1 1198 1711 -4933 1570 182 38 3 chr15 75849055 75849374 -9846380 + L1MC1 LINE L1 6003 6332 -1 1545 227 40 45 chr15 75849374 75849541 -9846213 + L1MB7 LINE L1 1711 1877 -4767 682 221 14 35 chr15 75849535 75849879 -9845875 + L1MB7 LINE L1 2579 2906 -3738 * 646 220 106 0 chr15 75849903 75850044 -9845710 + FRAM SINE Alu 1 154 -22 2461 234 59 39 chr15 75850103 75851217 -9844537 + L1MB7 LINE L1 2948 4084 -2560 2048 245 53 34 chr15 75851263 75851290 -9844464 + L1MB7 LINE L1 5920 5945 -737 1848 243 29 11 chr15 75851290 75851767 -9843987 + MER66B LTR ERV1 1 486 0 2048 245 53 34 chr15 75851767 75852016 -9843738 + L1MB7 LINE L1 5945 6188 -494 2271 104 0 7 chr15 75852016 75852315 -9843439 - AluSq SINE Alu -16 297 1 2082 115 0 11 chr15 75852318 75852625 -9843129 - AluSg SINE Alu 0 304 1 2048 245 53 34 chr15 75852625 75853089 -9842665 + L1MB7 LINE L1 6189 6681 -1 271 253 71 20 chr15 75853376 75853475 -9842279 + MLT1I LTR MaLR 110 213 -196 2119 116 17 0 chr15 75853622 75853914 -9841840 - AluSx SINE Alu -11 301 5 186 103 0 0 chr15 75854110 75854139 -9841615 + (CA)n Simple_repeat Simple_repeat 1 29 0 2258 94 13 7 chr15 75904593 75904891 -9790863 - AluSp SINE Alu -13 300 1 388 247 0 31 chr15 75904891 75904988 -9790766 + Tigger3(Golem) DNA MER2_type 2935 3028 -1 219 240 10 94 chr15 75904990 75905086 -9790668 + MIR SINE MIR 119 206 -56 2039 116 13 10 chr15 75905157 75905459 -9790295 - AluSq SINE Alu -10 303 1 1368 177 8 35 chr15 75906406 75906568 -9789186 + AluJb SINE Alu 1 155 -157 2654 121 11 8 chr15 75906568 75906931 -9788823 - THE1B LTR MaLR 0 364 1 1368 177 8 35 chr15 75906931 75907028 -9788726 + AluJb SINE Alu 155 253 -59 671 228 62 0 chr15 75907293 75907438 -9788316 + AluJb SINE Alu 146 299 -13 203 241 81 81 chr15 75907840 75907927 -9787827 + L2 LINE L2 3149 3235 -37 2186 108 0 3 chr15 75908116 75908411 -9787343 + AluSx SINE Alu 1 294 -18 1067 133 5 76 chr15 75908511 75908721 -9787033 + L1MA9 LINE L1 6118 6312 0 992 129 14 0 chr15 75908864 75909011 -9786743 - AluJb SINE Alu -17 295 147 550 174 20 10 chr15 75909413 75909511 -9786243 - FRAM SINE Alu -9 167 69 1027 203 16 11 chr15 75909709 75909896 -9785858 - MER5A DNA MER1_type -1 188 1 362 287 104 0 chr15 75909973 75910088 -9785666 + MIR SINE MIR 28 154 -108 2008 180 22 39 chr15 75910088 75910257 -9785497 - MER6A DNA MER2_type -260 605 435 1889 121 3 87 chr15 75910257 75910589 -9785165 + AluSx SINE Alu 1 304 -8 2008 180 22 39 chr15 75910589 75910825 -9784929 - MER6A DNA MER2_type -430 435 207 1867 79 3 128 chr15 75910825 75911154 -9784600 + LTR12 LTR ERV1 1 288 -426 957 180 35 10 chr15 75911254 75911454 -9784300 - MER1B DNA MER1_type -92 205 1 229 200 0 0 chr15 75911898 75911943 -9783811 + L2 LINE L2 3269 3313 0 2235 117 3 0 chr15 75912203 75912503 -9783251 - AluSx SINE Alu -11 301 1 2435 85 19 2 chr15 75912793 75913220 -9782534 + LTR12 LTR ERV1 374 710 -4 516 207 278 12 chr15 75913220 75913389 -9782365 - MER6A DNA MER2_type -391 214 1 181 296 0 28 chr15 75913389 75913460 -9782294 + MIR SINE MIR 156 224 -38 279 364 52 19 chr15 75913468 75913622 -9782132 - MIR SINE MIR -64 198 40 2100 109 41 0 chr15 75913682 75913976 -9781778 - AluSp SINE Alu -7 306 1 22 0 0 0 chr15 75914162 75914184 -9781570 + AT_rich Low_complexity Low_complexity 1 22 0 2085 135 10 0 chr15 75915082 75915385 -9780369 - AluSg SINE Alu -2 308 3 380 306 54 27 chr15 75915683 75915830 -9779924 + MIR SINE MIR 20 170 -92 372 355 6 12 chr15 75916824 75916990 -9778764 + L2 LINE L2 2172 2336 -978 307 341 40 17 chr15 75917382 75917558 -9778196 + MIR SINE MIR 36 215 -47 486 298 34 11 chr15 75917632 75917810 -9777944 - MIR SINE MIR -45 217 36 377 209 44 11 chr15 75919269 75919360 -9776394 - MLT1I LTR MaLR 0 409 316 21 0 0 0 chr15 75920012 75920033 -9775721 + AT_rich Low_complexity Low_complexity 1 21 0 300 300 33 20 chr15 75920578 75920763 -9774991 - MIR SINE MIR -14 248 2 2209 110 7 0 chr15 75920971 75921279 -9774475 + AluSp SINE Alu 1 310 -3 203 281 124 38 chr15 75921431 75921616 -9774138 + L2 LINE L2 2575 2775 -539 222 323 0 0 chr15 75921764 75921826 -9773928 + L2 LINE L2 3004 3065 -248 297 277 43 103 chr15 75922322 75922575 -9773179 - L2 LINE L2 -368 2946 2709 2358 68 3 7 chr15 75922578 75922873 -9772881 - AluSp SINE Alu -19 294 1 212 306 42 0 chr15 75924074 75924146 -9771608 - L2 LINE L2 -1001 2313 2239 1940 64 0 26 chr15 75925297 75925563 -9770191 - AluY SINE Alu -52 259 1 226 23 47 47 chr15 75925968 75926011 -9769743 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 190 260 27 96 chr15 75926887 75926960 -9768794 + L2 LINE L2 3205 3272 0 858 142 128 33 chr15 75927209 75927223 -9768531 + L1MD3 LINE L1 7752 7763 -232 282 29 0 0 chr15 75927223 75927258 -9768496 + (CA)n Simple_repeat Simple_repeat 2 36 0 858 142 128 33 chr15 75927258 75927454 -9768300 + L1MD3 LINE L1 7763 7982 -13 1128 118 0 0 chr15 75927500 75927704 -9768050 + (TATTG)n Simple_repeat Simple_repeat 1 204 0 1524 181 7 59 chr15 75927853 75928157 -9767597 - AluJo SINE Alu -24 288 1 31 26 0 0 chr15 75928253 75928291 -9767463 + AT_rich Low_complexity Low_complexity 1 38 0 852 91 41 8 chr15 75928291 75928412 -9767342 - AluSc SINE Alu -175 134 10 235 281 134 0 chr15 75928535 75928617 -9767137 + L2 LINE L2 2204 2296 -1018 769 55 0 0 chr15 75928774 75928865 -9766889 - AluSp SINE Alu -7 306 216 1203 86 7 0 chr15 75928867 75929019 -9766735 - AluSp SINE Alu -160 153 1 3545 206 63 54 chr15 75929019 75929115 -9766639 - L1M4 LINE L1 -850 5296 5202 1512 165 65 7 chr15 75929115 75929394 -9766360 - AluJb SINE Alu -6 306 12 3545 206 63 54 chr15 75929394 75929472 -9766282 - L1M4 LINE L1 -944 5202 5126 1699 181 7 16 chr15 75929472 75929782 -9765972 + AluJo SINE Alu 1 307 -5 3545 206 63 54 chr15 75929782 75930662 -9765092 - L1M4 LINE L1 -1020 5126 4231 204 294 0 15 chr15 75931091 75931159 -9764595 + GA-rich Low_complexity Low_complexity 3 69 0 22 35 0 0 chr15 75931602 75931631 -9764123 + AT_rich Low_complexity Low_complexity 1 29 0 228 163 0 0 chr15 75931937 75931980 -9763774 + A-rich Low_complexity Low_complexity 1 43 0 511 171 9 9 chr15 75933611 75933722 -9762032 + CT-rich Low_complexity Low_complexity 2 112 0 2473 77 7 0 chr15 75935167 75935467 -9760287 - AluSg SINE Alu -8 302 1 1961 87 94 22 chr15 75935897 75936173 -9759581 - AluSg SINE Alu -14 296 1 182 354 73 0 chr15 75936627 75936709 -9759045 - L2 LINE L2 -15 3298 3211 378 235 35 0 chr15 75936947 75937032 -9758722 + MLT1I LTR MaLR 26 113 -296 1833 114 4 19 chr15 75937032 75937303 -9758451 + AluSx SINE Alu 1 267 -45 23 54 0 0 chr15 75938351 75938388 -9757366 + AT_rich Low_complexity Low_complexity 1 37 0 1906 149 3 0 chr15 75938549 75938845 -9756909 + AluJb SINE Alu 1 297 -15 29 47 0 0 chr15 75940795 75940838 -9754916 + AT_rich Low_complexity Low_complexity 1 43 0 234 340 11 0 chr15 75941215 75941309 -9754445 - L1ME LINE L1 -260 5861 5767 184 347 69 98 chr15 75942255 75942500 -9753254 + L2 LINE L2 2992 3229 -43 3917 96 47 38 chr15 75942553 75943128 -9752626 - LTR12 LTR ERV1 -133 581 2 288 285 51 65 chr15 75943299 75943513 -9752241 + MLT1J LTR MaLR 5 215 -296 636 191 9 0 chr15 75944586 75944696 -9751058 + AluJo/FLAM SINE Alu 1 111 -201 * 643 194 0 0 chr15 75944694 75944802 -9750952 + AluSg/x SINE Alu 164 271 -39 186 43 0 0 chr15 75944816 75944839 -9750915 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 436 354 140 9 chr15 75945324 75945553 -9750201 - MIR SINE MIR -2 260 2 2205 111 10 10 chr15 75946721 75947019 -9748735 - AluSx SINE Alu -14 298 1 292 271 194 10 chr15 75947060 75947191 -9748563 - MIR SINE MIR -58 150 3 450 129 0 65 chr15 75947991 75948084 -9747670 - AluJ/FLAM SINE Alu -225 87 1 218 254 51 0 chr15 75948104 75948163 -9747591 + L2 LINE L2 3225 3286 -27 315 246 48 24 chr15 75949887 75950013 -9745741 + MER103 DNA DNA 8 136 -30 310 339 9 9 chr15 75950147 75950256 -9745498 - MIR SINE MIR -36 226 118 241 342 32 41 chr15 75950282 75950422 -9745332 + MER5A DNA MER1_type 35 189 0 1123 86 0 0 chr15 75950451 75950591 -9745163 - AluSg/x SINE Alu -19 293 154 316 333 10 0 chr15 75952231 75952333 -9743421 - MIR3 SINE MIR -40 168 66 220 177 0 48 chr15 75954595 75954657 -9741097 + A-rich Low_complexity Low_complexity 5 63 0 24 32 0 0 chr15 75954839 75954870 -9740884 + AT_rich Low_complexity Low_complexity 1 31 0 544 100 42 0 chr15 75954872 75954992 -9740762 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 416 155 72 31 chr15 75956095 75956192 -9739562 + MER69 DNA AcHobo 4 104 -1122 565 147 18 0 chr15 75956735 75956844 -9738910 + GA-rich Low_complexity Low_complexity 3 113 0 216 299 15 0 chr15 75956987 75957054 -9738700 - L2 LINE L2 0 3272 3205 188 293 0 0 chr15 75957806 75957864 -9737890 - MIR3 SINE MIR -2 206 149 234 0 0 0 chr15 75958665 75958691 -9737063 + (CA)n Simple_repeat Simple_repeat 2 27 0 310 255 330 0 chr15 75958852 75959010 -9736744 + MIR SINE MIR 42 250 -12 4513 254 78 39 chr15 75959394 75961110 -9734644 - L1M4c LINE L1 -4047 2778 782 1053 193 201 12 chr15 75961110 75961364 -9734390 - AluJb SINE Alu 0 302 1 4513 254 78 39 chr15 75961364 75962163 -9733591 - L1M4c LINE L1 -6043 782 16 1212 180 115 46 chr15 75962264 75962525 -9733229 + AluJo SINE Alu 3 281 -31 390 167 0 0 chr15 75962540 75962648 -9733106 + (TA)n Simple_repeat Simple_repeat 1 108 0 290 270 130 9 chr15 75963411 75963526 -9732228 + MIR SINE MIR 134 262 0 1677 159 0 11 chr15 75963624 75963919 -9731835 - AluJb SINE Alu 0 306 15 335 125 18 0 chr15 75963942 75963998 -9731756 + L2 LINE L2 3014 3070 -243 504 263 0 0 chr15 75964031 75964145 -9731609 + MER81 DNA DNA 1 114 0 358 282 24 81 chr15 75964176 75964385 -9731369 + L2 LINE L2 3117 3313 0 185 371 76 48 chr15 75966838 75966943 -9728811 - L2 LINE L2 -69 3203 3096 267 31 0 0 chr15 75967004 75967036 -9728718 + (TA)n Simple_repeat Simple_repeat 2 33 0 1958 141 3 3 chr15 75967036 75967327 -9728427 - AluSx SINE Alu -21 291 1 478 287 249 12 chr15 75968376 75968710 -9727044 - L2 LINE L2 -1 3312 2900 1755 174 10 0 chr15 75968903 75969197 -9726557 + AluJb SINE Alu 1 297 -15 216 207 103 58 chr15 75970669 75970756 -9724998 - MIR SINE MIR 0 262 172 3352 115 2 16 chr15 75971758 75972255 -9723499 + MER1A DNA MER1_type 40 529 0 275 383 67 0 chr15 75972712 75972832 -9722922 + L2 LINE L2 3136 3263 -9 204 298 24 36 chr15 75973509 75973593 -9722161 + MIR SINE MIR 71 153 -109 23 0 0 0 chr15 75974104 75974127 -9721627 + AT_rich Low_complexity Low_complexity 1 23 0 788 179 40 12 chr15 75974139 75974308 -9721446 + MER5A DNA MER1_type 1 168 -10 317 292 102 19 chr15 75976498 75976714 -9719040 + L1ME4a LINE L1 5724 5957 -164 1274 168 0 142 chr15 75976781 75977133 -9718621 - AluJo SINE Alu 0 302 1 865 166 0 91 chr15 75977253 75977452 -9718302 - AluJo SINE Alu -131 181 1 360 145 0 16 chr15 75979235 75979297 -9716457 + MER58 DNA MER1_type 2360 2420 0 1160 208 40 57 chr15 75979457 75979827 -9715927 + L1ME2 LINE L1 5778 6141 -23 1927 154 0 16 chr15 75981295 75981607 -9714147 + AluJo SINE Alu 1 307 -5 342 310 92 2 chr15 75982407 75982589 -9713165 + MIR SINE MIR 28 226 -36 937 182 42 0 chr15 75982659 75982824 -9712930 - AluJb SINE Alu -9 303 132 281 308 7 48 chr15 75982942 75983068 -9712686 + MIR SINE MIR 6 127 -135 2168 101 54 0 chr15 75983068 75983365 -9712389 - AluSp SINE Alu 0 313 1 281 308 7 48 chr15 75983365 75983384 -9712370 + MIR SINE MIR 127 145 -117 182 128 26 0 chr15 75983968 75984007 -9711747 + GA-rich Low_complexity Low_complexity 1 40 0 356 304 101 13 chr15 75984288 75984475 -9711279 - MIR SINE MIR -3 259 54 181 269 28 111 chr15 75984718 75984826 -9710928 + MIR SINE MIR 46 144 -118 186 292 52 62 chr15 75985099 75985195 -9710559 - L2 LINE L2 -177 3095 3001 22 0 0 0 chr15 75986510 75986532 -9709222 + AT_rich Low_complexity Low_complexity 1 22 0 304 167 37 0 chr15 75989766 75989820 -9705934 + L2 LINE L2 3204 3259 -13 472 182 0 0 chr15 75990527 75990604 -9705150 + AluJ/FLAM SINE Alu 1 77 -235 31 44 0 0 chr15 75990640 75990685 -9705069 + AT_rich Low_complexity Low_complexity 1 45 0 337 106 15 30 chr15 75990705 75990771 -9704983 + Alu SINE Alu 237 301 -1 308 292 54 18 chr15 75990784 75990952 -9704802 - MLT1J LTR MaLR -228 283 110 2164 174 10 12 chr15 75991118 75991521 -9704233 - L1MB7 LINE L1 -8 6176 5775 1049 131 75 0 chr15 75991624 75991784 -9703970 + AluSg/x SINE Alu 129 300 -12 596 300 110 18 chr15 75992131 75992358 -9703396 - MIR SINE MIR -6 256 9 1976 116 7 30 chr15 75992972 75993275 -9702479 - AluSx SINE Alu -6 306 11 10416 39 0 2 chr15 75993362 75995334 -9700420 + L1PA5 LINE L1 4161 6138 -16 1804 120 4 15 chr15 75995849 75996115 -9699639 + AluSx SINE Alu 40 302 -10 21 0 0 0 chr15 75996147 75996168 -9699586 + AT_rich Low_complexity Low_complexity 1 21 0 352 176 235 10 chr15 75996270 75996372 -9699382 + L2 LINE L2 3186 3310 -3 2060 125 17 3 chr15 75997021 75997317 -9698437 - AluSx SINE Alu -12 300 1 987 182 0 0 chr15 75997524 75997689 -9698065 - AluJb SINE Alu -3 309 145 278 127 76 0 chr15 75997690 75997769 -9697985 + (TA)n Simple_repeat Simple_repeat 1 85 0 732 190 0 0 chr15 75997770 75997886 -9697868 - FLAM_C SINE Alu -26 117 2 369 281 44 50 chr15 75999289 75999449 -9696305 - MIR SINE MIR -66 196 38 180 111 0 0 chr15 75999524 75999551 -9696203 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1400 215 134 97 chr15 75999779 76000535 -9695219 + LTR1B LTR ERV1 1 983 -37 220 363 71 18 chr15 76000699 76000980 -9694774 + L2 LINE L2 2419 2714 -600 429 227 18 18 chr15 76001098 76001208 -9694546 - MER103 DNA DNA -48 118 9 1686 162 7 7 chr15 76002577 76002855 -9692899 - AluJb SINE Alu -24 288 11 377 279 107 7 chr15 76003565 76003705 -9692049 + MER91A DNA MER1_type 1 154 -42 2420 60 2 0 chr15 76003939 76004251 -9691503 - L1PA4 LINE L1 -169 5986 5668 307 259 89 27 chr15 76004428 76004540 -9691214 - MIR SINE MIR -75 187 69 204 262 179 12 chr15 76004607 76004691 -9691063 + L2 LINE L2 3170 3267 -5 2313 124 39 36 chr15 76005710 76006073 -9689681 + THE1B LTR MaLR 1 364 0 2112 130 10 3 chr15 76006788 76007096 -9688658 + AluSx SINE Alu 1 310 -2 1465 155 26 113 chr15 76009107 76009290 -9686464 + L1MA9 LINE L1 5953 6150 -162 294 29 0 0 chr15 76009290 76009325 -9686429 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1465 155 26 113 chr15 76009325 76009336 -9686418 + L1MA9 LINE L1 6150 6160 -152 1877 124 23 0 chr15 76009336 76009601 -9686153 - AluSx SINE Alu -41 271 1 1465 155 26 113 chr15 76009601 76009748 -9686006 + L1MA9 LINE L1 6160 6260 -52 1691 144 69 0 chr15 76009748 76010025 -9685729 - AluJb SINE Alu -16 296 1 1465 155 26 113 chr15 76010025 76010069 -9685685 + L1MA9 LINE L1 6260 6306 -6 650 328 25 86 chr15 76011031 76011506 -9684248 - L2 LINE L2 0 3272 2827 185 339 94 16 chr15 76011595 76011722 -9684032 - MIR SINE MIR -21 241 105 285 29 0 0 chr15 76011770 76011804 -9683950 + (CAGCC)n Simple_repeat Simple_repeat 4 37 0 436 283 56 25 chr15 76012055 76012253 -9683501 + MIR SINE MIR 3 206 -56 359 322 12 78 chr15 76013510 76013768 -9681986 - MIR SINE MIR -6 256 16 209 354 42 21 chr15 76014547 76014643 -9681111 - MIR SINE MIR -86 122 25 1908 144 10 20 chr15 76014983 76015289 -9680465 + AluSx SINE Alu 1 303 -9 237 264 132 50 chr15 76015335 76015456 -9680298 + MER5A DNA MER1_type 16 146 -43 431 267 20 0 chr15 76015490 76015591 -9680163 + MER5A DNA MER1_type 10 112 -77 240 218 81 89 chr15 76015667 76015791 -9679963 - L3 LINE CR1 -1158 419 297 2439 82 3 3 chr15 76016187 76016491 -9679263 + AluSp SINE Alu 1 304 -9 1973 150 0 3 chr15 76016736 76017049 -9678705 - AluSx SINE Alu 0 312 1 24 32 0 0 chr15 76017052 76017083 -9678671 + AT_rich Low_complexity Low_complexity 1 31 0 258 302 28 0 chr15 76017209 76017315 -9678439 - L1ME LINE L1 -303 5818 5710 2313 110 3 0 chr15 76017916 76018217 -9677537 - AluSp SINE Alu -8 305 4 1722 169 3 16 chr15 76018555 76018868 -9676886 + AluJo SINE Alu 1 309 -3 230 323 20 10 chr15 76019464 76019563 -9676191 - L2 LINE L2 -1889 1425 1326 265 191 101 45 chr15 76019612 76019701 -9676053 + L1MC4a LINE L1 5569 5662 -508 311 369 25 8 chr15 76019765 76020001 -9675753 + L1MC4a LINE L1 5682 5921 -1887 189 196 0 0 chr15 76020330 76020381 -9675373 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2417 81 3 0 chr15 76020640 76020937 -9674817 + AluSg SINE Alu 1 298 -12 287 318 65 0 chr15 76023399 76023506 -9672248 - MER103 DNA DNA -49 117 4 1010 162 5 42 chr15 76024230 76024421 -9671333 - MER5A DNA MER1_type -3 186 3 363 329 13 18 chr15 76024428 76024587 -9671167 + MER5A DNA MER1_type 1 160 -18 342 219 79 35 chr15 76027053 76027167 -9668587 + MIR SINE MIR 23 141 -67 225 261 0 0 chr15 76028589 76028635 -9667119 + polypyrimidine Low_complexity Low_complexity 2 47 0 225 180 0 0 chr15 76029634 76029684 -9666070 + A-rich Low_complexity Low_complexity 1 50 0 388 311 36 32 chr15 76030454 76030692 -9665062 - MIR SINE MIR -26 236 3 2106 99 0 14 chr15 76030885 76031191 -9664563 + AluSg SINE Alu 2 303 0 226 241 71 85 chr15 76031411 76031552 -9664202 + L2 LINE L2 2926 3064 -249 21 0 0 0 chr15 76032041 76032062 -9663692 + AT_rich Low_complexity Low_complexity 1 21 0 1709 113 0 0 chr15 76032390 76032629 -9663125 + AluSp SINE Alu 74 312 -1 225 203 51 0 chr15 76033829 76033888 -9661866 - MLT1L LTR MaLR -52 563 502 239 289 0 0 chr15 76034195 76034247 -9661507 - MLT1L LTR MaLR -503 112 61 2232 92 7 3 chr15 76034248 76034562 -9661192 - AluSx SINE Alu 0 315 1 232 356 47 27 chr15 76035261 76035410 -9660344 + L2 LINE L2 2892 3043 -229 801 284 19 5 chr15 76036391 76036599 -9659155 + MIR SINE MIR 26 236 -26 27 73 0 0 chr15 76037097 76037152 -9658602 + AT_rich Low_complexity Low_complexity 1 55 0 745 246 60 15 chr15 76037644 76037843 -9657911 + MER63A DNA MER1_type 1 208 -2 2143 85 9 60 chr15 76038137 76038455 -9657299 - AluSx SINE Alu -9 303 2 339 336 35 0 chr15 76039443 76039559 -9656195 + MER91A DNA MER1_type 4 123 -73 1504 187 6 47 chr15 76040213 76040534 -9655220 + AluJb SINE Alu 5 312 0 1005 273 125 25 chr15 76040655 76041094 -9654660 - MLT1J LTR MaLR -10 501 19 198 0 0 0 chr15 76042341 76042363 -9653391 + (CA)n Simple_repeat Simple_repeat 2 23 0 204 231 0 0 chr15 76043362 76043401 -9652353 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 714 212 99 0 chr15 76044733 76044884 -9650870 + AluJb SINE Alu 137 302 -10 191 316 0 13 chr15 76045363 76045439 -9650315 + MIR SINE MIR 185 259 -3 228 351 10 7 chr15 76045441 76045584 -9650170 - MIR3 SINE MIR -1 207 63 445 254 87 16 chr15 76045732 76045858 -9649896 + L2 LINE L2 3137 3271 -1 208 216 20 20 chr15 76046507 76046558 -9649196 + MIR SINE MIR 96 146 -62 2404 68 0 0 chr15 76049349 76049643 -9646111 + AluSc SINE Alu 1 294 -15 266 0 29 0 chr15 76049695 76049729 -9646025 + (CAA)n Simple_repeat Simple_repeat 2 36 0 646 228 37 63 chr15 76050420 76050609 -9645145 - MIR SINE MIR 0 262 79 2084 130 24 0 chr15 76051003 76051132 -9644622 + AluSx SINE Alu 1 125 -187 342 0 0 0 chr15 76051132 76051170 -9644584 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2084 130 24 0 chr15 76051170 76051332 -9644422 + AluSx SINE Alu 125 299 -13 505 247 27 55 chr15 76051332 76051551 -9644203 - MLT1K LTR MaLR -15 573 361 295 352 8 8 chr15 76051587 76051715 -9644039 - MLT1K LTR MaLR -295 293 166 234 256 0 0 chr15 76052907 76052985 -9642769 + (TA)n Simple_repeat Simple_repeat 1 78 0 400 283 2 19 chr15 76053295 76053412 -9642342 - MIR SINE MIR -77 131 14 1705 167 55 12 chr15 76053426 76053755 -9641999 + MER61A LTR ERV1 1 343 0 1118 155 12 0 chr15 76054638 76054806 -9640948 - AluSg/x SINE Alu -8 302 133 2092 125 27 0 chr15 76054807 76055104 -9640650 - AluSx SINE Alu -7 305 1 765 133 47 23 chr15 76055222 76055350 -9640404 + FLAM_C SINE Alu 1 131 -2 1335 201 19 26 chr15 76055359 76055628 -9640126 + AluJo SINE Alu 19 285 -27 2424 81 3 0 chr15 76057179 76057477 -9638277 - AluSp SINE Alu -14 299 1 255 61 0 0 chr15 76058538 76058571 -9637183 + (TG)n Simple_repeat Simple_repeat 2 34 0 939 316 130 42 chr15 76060155 76061132 -9634622 - L1MEc LINE L1 -2350 3865 2803 351 0 0 0 chr15 76061204 76061243 -9634511 + (CA)n Simple_repeat Simple_repeat 2 40 0 2176 114 0 7 chr15 76061330 76061627 -9634127 - AluSg SINE Alu -15 295 1 427 83 0 0 chr15 76061690 76061750 -9634004 - Alu SINE Alu -10 300 241 351 298 156 34 chr15 76061750 76062216 -9633538 - L1MEc LINE L1 -3655 2560 2082 753 173 0 8 chr15 76062795 76062928 -9632826 - FLAM_C SINE Alu 0 133 2 210 71 0 0 chr15 76063027 76063055 -9632699 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 578 240 49 33 chr15 76063064 76063247 -9632507 - LTR16A LTR ERVL 0 450 265 231 317 22 22 chr15 76063484 76063667 -9632087 - HAL1 LINE L1 -1163 1344 1162 188 304 70 26 chr15 76064478 76064593 -9631161 + L2 LINE L2 3176 3295 -18 397 286 170 11 chr15 76064846 76065028 -9630726 + MIR SINE MIR 41 251 -11 442 274 0 0 chr15 76065570 76065672 -9630082 + MIR SINE MIR 23 124 -138 239 270 48 0 chr15 76065704 76065767 -9629987 - MIR SINE MIR -40 222 157 1862 126 20 50 chr15 76065770 76066072 -9629682 + AluSx SINE Alu 1 293 -19 229 265 15 29 chr15 76066088 76066156 -9629598 + MIR SINE MIR 173 239 -23 5138 150 27 9 chr15 76066346 76067561 -9628193 - L1PA16 LINE L1 -1 6165 4928 225 163 0 0 chr15 76067687 76067730 -9628024 - L1PA16 LINE L1 -1201 4945 4903 1799 140 60 23 chr15 76068559 76068859 -9626895 - AluJo SINE Alu -1 311 1 2119 148 0 0 chr15 76069583 76069894 -9625860 - AluSx SINE Alu -1 311 1 197 234 102 47 chr15 76070176 76070304 -9625450 + L3b LINE CR1 1183 1317 -266 498 311 94 55 chr15 76070584 76071193 -9624561 - L2 LINE L2 -308 3005 2369 413 328 33 0 chr15 76071259 76071381 -9624373 + L2 LINE L2 3181 3306 -7 285 356 76 8 chr15 76121533 76121665 -9574089 - MIR SINE MIR -110 152 12 551 311 98 4 chr15 76123042 76123267 -9572487 - MIR SINE MIR 0 262 17 3855 149 45 50 chr15 76123416 76123864 -9571890 + L1MC2 LINE L1 5594 6038 -306 2177 118 16 7 chr15 76123864 76124170 -9571584 - AluSx SINE Alu -3 309 1 3855 149 45 50 chr15 76124170 76124474 -9571280 + L1MC2 LINE L1 6038 6342 -2 1614 163 58 10 chr15 76124639 76124934 -9570820 + AluJo SINE Alu 1 309 -3 2159 137 0 13 chr15 76125157 76125472 -9570282 - AluSx SINE Alu -1 311 1 301 336 0 10 chr15 76125563 76125667 -9570087 + GA-rich Low_complexity Low_complexity 1 103 0 253 208 0 0 chr15 76126643 76126691 -9569063 - MIR SINE MIR -106 156 109 541 332 170 9 chr15 76127054 76127718 -9568036 - L2 LINE L2 -1 3312 2520 225 0 0 0 chr15 76127741 76127766 -9567988 + (A)n Simple_repeat Simple_repeat 1 25 0 197 288 100 56 chr15 76127917 76128022 -9567732 - MIR3 SINE MIR 0 208 92 2185 90 17 10 chr15 76128022 76128323 -9567431 + AluY SINE Alu 1 303 -8 197 288 100 56 chr15 76128323 76128377 -9567377 - MIR3 SINE MIR -116 92 42 200 259 148 37 chr15 76128921 76129002 -9566752 - MIR SINE MIR 0 262 173 231 165 0 127 chr15 76129077 76129156 -9566598 + MLT1J2 LTR MaLR 96 164 -385 334 161 66 94 chr15 76129341 76129489 -9566265 + MLT1J2 LTR MaLR 361 450 0 969 303 92 39 chr15 76130920 76131385 -9564369 + L3 LINE CR1 129 618 -959 883 294 96 52 chr15 76131599 76132161 -9563593 + MLT1K LTR MaLR 2 588 0 558 352 101 12 chr15 76132945 76133363 -9562391 + L3 LINE CR1 667 1121 -456 2079 125 42 48 chr15 76133453 76133830 -9561924 - THE1C LTR MaLR 0 375 1 184 286 20 0 chr15 76133849 76133898 -9561856 - L2 LINE L2 -35 3237 3188 523 325 120 29 chr15 76133928 76134236 -9561518 + L3 LINE CR1 1144 1479 -98 211 273 18 0 chr15 76134527 76134582 -9561172 + L3b LINE CR1 1526 1581 -2 360 0 0 0 chr15 76135636 76135676 -9560078 + (TA)n Simple_repeat Simple_repeat 2 41 0 307 276 262 0 chr15 76137746 76137891 -9557863 - MIR SINE MIR -43 219 37 1759 151 10 14 chr15 76138009 76138300 -9557454 - AluJo SINE Alu -2 310 21 340 275 319 16 chr15 76138629 76138811 -9556943 + MIR SINE MIR 17 253 -9 957 219 0 0 chr15 76139370 76139539 -9556215 + FAM SINE Alu 2 170 -5 2022 137 37 0 chr15 76139856 76140156 -9555598 - AluSq SINE Alu -2 311 1 282 313 58 16 chr15 76140190 76140344 -9555410 - MIR SINE MIR -49 213 55 716 286 34 8 chr15 76140606 76140840 -9554914 - MIR SINE MIR -6 256 17 430 121 0 0 chr15 76141040 76141106 -9554648 - Alu SINE Alu -8 303 238 675 302 138 29 chr15 76142127 76142438 -9553316 - L3b LINE CR1 -19 1564 1220 616 254 0 0 chr15 76143103 76143225 -9552529 - MIR SINE MIR -139 123 2 267 103 0 0 chr15 76146222 76146261 -9549493 + MIR SINE MIR 216 254 -8 248 102 20 0 chr15 76147667 76147716 -9548038 + (CA)n Simple_repeat Simple_repeat 2 51 0 231 286 12 12 chr15 76147807 76147891 -9547863 + C-rich Low_complexity Low_complexity 6 89 0 256 250 15 0 chr15 76148599 76148667 -9547087 + CT-rich Low_complexity Low_complexity 2 70 0 243 323 0 0 chr15 76148853 76148915 -9546839 + G-rich Low_complexity Low_complexity 4 65 0 189 74 0 0 chr15 76148916 76148943 -9546811 + (GA)n Simple_repeat Simple_repeat 2 28 0 223 206 0 33 chr15 76151079 76151171 -9544583 + CT-rich Low_complexity Low_complexity 2 90 0 306 0 0 0 chr15 76151215 76151249 -9544505 + (TG)n Simple_repeat Simple_repeat 1 34 0 324 111 0 0 chr15 76151249 76151303 -9544451 + (GA)n Simple_repeat Simple_repeat 2 55 0 189 0 0 0 chr15 76154041 76154062 -9541692 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr15 76154730 76154759 -9540995 + GC_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr15 76155621 76155651 -9540103 + (T)n Simple_repeat Simple_repeat 1 30 0 1864 128 3 46 chr15 76157472 76157776 -9537978 + AluSx SINE Alu 1 291 -21 186 43 0 0 chr15 76157783 76157806 -9537948 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 268 259 102 19 chr15 76157909 76158017 -9537737 - MLT1L LTR MaLR -4 611 495 649 249 49 25 chr15 76158351 76158596 -9537158 + LTR33 LTR ERVL 271 521 0 234 0 0 0 chr15 76159454 76159480 -9536274 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 998 198 0 0 chr15 76159596 76159763 -9535991 + FRAM SINE Alu 1 162 -14 24 32 0 0 chr15 76159885 76159916 -9535838 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr15 76159976 76160001 -9535753 + AT_rich Low_complexity Low_complexity 1 25 0 279 264 32 72 chr15 76160070 76160135 -9535619 + L2 LINE L2 3152 3211 -102 1720 162 27 7 chr15 76160135 76160431 -9535323 - AluJb SINE Alu -10 302 1 279 264 32 72 chr15 76160431 76160490 -9535264 + L2 LINE L2 3211 3271 -42 4420 127 105 123 chr15 76161219 76162652 -9533102 + pTR5 LTR ERV1 741 2438 0 1448 231 89 16 chr15 76162863 76163288 -9532466 - Charlie1b DNA MER1_type 0 523 68 411 301 114 32 chr15 76163709 76164148 -9531606 + L1ME1 LINE L1 5412 5886 -280 196 284 123 0 chr15 76164754 76164835 -9530919 - MIR SINE MIR -71 191 101 363 214 0 0 chr15 76166805 76166875 -9528879 - 7SK RNA RNA -3 190 121 630 164 0 17 chr15 76166913 76167029 -9528725 - 7SK RNA RNA -71 122 9 553 301 66 14 chr15 76168282 76168495 -9527259 - MIR SINE MIR -13 249 26 1907 137 0 31 chr15 76168986 76169324 -9526430 - AluSx SINE Alu 0 329 1 1939 128 35 10 chr15 76169611 76169900 -9525854 - AluJb SINE Alu -16 296 1 1084 284 67 7 chr15 76170087 76170196 -9525558 + L1ME3A LINE L1 5540 5641 -529 378 0 0 0 chr15 76170196 76170238 -9525516 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 1084 284 67 7 chr15 76170238 76170682 -9525072 + L1ME3A LINE L1 5641 6165 -5 2272 120 0 16 chr15 76170754 76171071 -9524683 + AluSx SINE Alu 1 312 0 1078 245 90 61 chr15 76171081 76171559 -9524195 + L1ME1 LINE L1 63 554 -5842 * 1466 232 130 15 chr15 76171555 76172093 -9523661 + L1ME1 LINE L1 1659 2258 -4138 2314 167 3 0 chr15 76172098 76172475 -9523279 + MER57A LTR ERV1 3 380 -23 2503 248 37 9 chr15 76172493 76173284 -9522470 + L1ME1 LINE L1 2433 3245 -2970 3988 261 62 25 chr15 76173302 76174884 -9520870 + L1ME1 LINE L1 3327 4966 -1249 302 161 185 39 chr15 76174901 76175031 -9520723 + L1ME1 LINE L1 5191 5339 -876 1812 141 35 21 chr15 76175031 76175315 -9520439 + AluJo SINE Alu 1 288 -24 2887 207 54 14 chr15 76175334 76176048 -9519706 + L1ME1 LINE L1 5293 6028 -207 2219 131 20 53 chr15 76176046 76176443 -9519311 + L1MA9 LINE L1 5397 5780 -532 * 298 0 48 0 chr15 76176443 76176485 -9519269 + (TA)n Simple_repeat Simple_repeat 2 45 0 258 71 71 0 chr15 76176501 76176543 -9519211 - L1M2 LINE L1 -491 5821 5777 243 186 21 93 chr15 76176593 76176690 -9519064 - L1MC4 LINE L1 -1339 6703 6614 2528 182 16 18 chr15 76176713 76177207 -9518547 + L1MA9 LINE L1 5782 6274 -38 2257 113 0 17 chr15 76177222 76177524 -9518230 + AluSg SINE Alu 3 299 -11 816 254 26 0 chr15 76177548 76177741 -9518013 + L1ME1 LINE L1 6033 6230 -5 2188 97 22 0 chr15 76177824 76178135 -9517619 - AluSx SINE Alu 0 317 1 1081 72 0 0 chr15 76178407 76178546 -9517208 - L1PA5 LINE L1 0 6154 6016 2215 129 3 0 chr15 76180998 76181309 -9514445 - AluSx SINE Alu 0 312 1 452 280 13 32 chr15 76181485 76181642 -9514112 - L2 LINE L2 0 3313 3160 913 131 0 0 chr15 76181643 76181765 -9513989 + FLAM_C SINE Alu 2 123 -20 399 278 171 20 chr15 76181802 76182054 -9513700 - L2 LINE L2 -173 3140 2851 339 274 57 8 chr15 76183370 76183494 -9512260 + MIR SINE MIR 56 185 -77 325 297 0 0 chr15 76183503 76183594 -9512160 - LTR67 LTR ERVL -9 548 458 255 315 0 0 chr15 76183949 76184022 -9511732 + MIR SINE MIR 180 252 -10 431 254 32 16 chr15 76184654 76184780 -9510974 + MER5B DNA MER1_type 37 164 -14 208 353 118 7 chr15 76185710 76185863 -9509891 - MIR3 SINE MIR -27 181 12 21 0 0 0 chr15 76187414 76187435 -9508319 + AT_rich Low_complexity Low_complexity 1 21 0 339 288 104 27 chr15 76187869 76188091 -9507663 + MIR SINE MIR 14 252 -10 451 296 45 30 chr15 76190851 76191050 -9504704 - MIR SINE MIR -14 248 47 192 289 211 0 chr15 76191627 76191703 -9504051 + MIR SINE MIR 33 124 -84 1677 187 33 38 chr15 76192586 76192982 -9502772 + MSTD LTR MaLR 3 396 0 36 40 0 0 chr15 76193122 76193172 -9502582 + AT_rich Low_complexity Low_complexity 1 50 0 311 256 146 24 chr15 76193578 76193742 -9502012 + L1ME4a LINE L1 5933 6116 -5 243 225 113 14 chr15 76194817 76194888 -9500866 - L2 LINE L2 -17 3296 3219 1431 294 82 50 chr15 76194971 76195953 -9499801 - L2 LINE L2 -369 2945 1933 2373 63 0 13 chr15 76200484 76200801 -9494953 + AluSq SINE Alu 1 313 0 340 291 15 71 chr15 76202227 76202423 -9493331 - MIR SINE MIR -20 242 58 319 273 8 33 chr15 76202560 76202681 -9493073 - MIR SINE MIR -107 155 38 180 0 0 0 chr15 76202743 76202763 -9492991 + (CA)n Simple_repeat Simple_repeat 1 20 0 257 137 39 0 chr15 76202814 76202865 -9492889 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 612 267 22 17 chr15 76203064 76203244 -9492510 - MIR SINE MIR -56 206 26 2014 124 14 0 chr15 76203250 76203541 -9492213 + AluSx SINE Alu 1 295 -17 390 318 32 8 chr15 76204652 76204778 -9490976 - L2 LINE L2 -3 3269 3141 2003 130 0 3 chr15 76205023 76205331 -9490423 - AluSq SINE Alu -6 307 1 1549 143 4 39 chr15 76205448 76205727 -9490027 - AluJo SINE Alu -33 279 11 216 0 0 0 chr15 76205991 76206015 -9489739 + (A)n Simple_repeat Simple_repeat 1 24 0 346 284 102 0 chr15 76206135 76206262 -9489492 + L2 LINE L2 3133 3272 0 1291 193 12 4 chr15 76206779 76207028 -9488726 + AluJb SINE Alu 1 251 -61 2007 104 35 0 chr15 76207090 76207377 -9488377 - AluSc SINE Alu -12 297 1 780 176 0 0 chr15 76208213 76208332 -9487422 + FLAM_A SINE Alu 2 120 -13 1580 195 20 0 chr15 76208378 76208800 -9486954 - AluJo SINE Alu 0 428 1 23 78 0 0 chr15 76209499 76209550 -9486204 + AT_rich Low_complexity Low_complexity 1 51 0 1288 180 52 56 chr15 76210837 76210996 -9484758 - AluJo SINE Alu -7 305 147 6825 47 6 1 chr15 76210996 76212442 -9483312 - L1PA5 LINE L1 -1 6153 4671 1288 180 52 56 chr15 76212442 76212455 -9483299 - AluJo SINE Alu -165 147 135 2193 102 3 6 chr15 76212455 76212768 -9482986 - AluSp SINE Alu -1 312 1 1288 180 52 56 chr15 76212768 76212900 -9482854 - AluJo SINE Alu -177 135 1 1516 212 176 46 chr15 76212906 76213406 -9482348 + MLT1F1 LTR MaLR 3 567 0 213 210 0 81 chr15 76213424 76213486 -9482268 + L2 LINE L2 3257 3313 0 23 0 0 0 chr15 76213493 76213516 -9482238 + AT_rich Low_complexity Low_complexity 1 23 0 188 139 47 0 chr15 76213615 76213658 -9482096 - L2 LINE L2 0 3313 3269 415 304 36 0 chr15 76214015 76214153 -9481601 + MIR3 SINE MIR 23 165 -43 915 135 6 41 chr15 76214157 76214327 -9481427 - FRAM SINE Alu -17 159 1 279 133 0 0 chr15 76214411 76214456 -9481298 + (A)n Simple_repeat Simple_repeat 1 45 0 1598 189 3 7 chr15 76214458 76214749 -9481005 + AluJb SINE Alu 3 292 -20 1572 98 5 0 chr15 76214761 76214975 -9480779 - AluSg/x SINE Alu -18 292 78 420 55 0 0 chr15 76215542 76215597 -9480157 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 1155 229 15 11 chr15 76215606 76215872 -9479882 - AluJo SINE Alu -1 311 45 227 79 26 0 chr15 76216247 76216285 -9479469 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 891 283 28 79 chr15 76216860 76217291 -9478463 - MLT1I LTR MaLR 0 409 1 448 276 52 15 chr15 76217296 76217430 -9478324 - MIR3 SINE MIR -51 157 19 1834 139 0 14 chr15 76217533 76217842 -9477912 + AluJo SINE Alu 1 305 0 476 261 72 77 chr15 76217842 76217935 -9477819 + L1M4 LINE L1 4760 4852 -1294 1954 121 0 22 chr15 76217935 76218248 -9477506 - AluSc SINE Alu -3 306 1 476 261 72 77 chr15 76218248 76218598 -9477156 + L1M4 LINE L1 4852 5201 -945 716 191 0 0 chr15 76218626 76218762 -9476992 + AluJb SINE Alu 177 312 0 186 304 118 69 chr15 76218921 76219093 -9476661 - MIR SINE MIR -42 220 35 2420 121 0 19 chr15 76219093 76219464 -9476290 + L1PA16 LINE L1 5803 6166 0 186 304 118 69 chr15 76219464 76219495 -9476259 - MIR SINE MIR -227 35 7 626 304 116 4 chr15 76220742 76220992 -9474762 - MLT1K LTR MaLR -3 585 308 431 300 35 47 chr15 76221085 76221255 -9474499 - MLT1K LTR MaLR -411 177 10 1586 172 27 7 chr15 76221978 76222274 -9473480 - AluJb SINE Alu -10 302 1 282 294 30 105 chr15 76222287 76222518 -9473236 - MIR SINE MIR -5 257 45 573 278 98 6 chr15 76222547 76222763 -9472991 + MIR SINE MIR 2 232 -30 344 291 62 75 chr15 76223514 76223806 -9471948 - L2 LINE L2 -86 3186 2899 845 248 50 5 chr15 76223997 76224219 -9471535 - MIR SINE MIR 0 262 31 22 0 0 0 chr15 76226676 76226698 -9469056 + AT_rich Low_complexity Low_complexity 1 22 0 1807 114 15 68 chr15 76226813 76227138 -9468616 - AluSx SINE Alu 0 312 5 267 236 0 0 chr15 76227158 76227230 -9468524 + CT-rich Low_complexity Low_complexity 4 75 0 336 263 74 0 chr15 76227244 76227339 -9468415 - L2 LINE L2 -10 3262 3161 26 0 0 0 chr15 76228028 76228054 -9467700 + AT_rich Low_complexity Low_complexity 1 26 0 1322 176 86 8 chr15 76228057 76228324 -9467430 - AluJo SINE Alu -24 288 1 205 320 176 13 chr15 76229307 76229460 -9466294 - MIR SINE MIR -7 255 78 466 294 86 12 chr15 76229572 76229735 -9466019 - MIR SINE MIR -77 185 11 2049 131 3 3 chr15 76229814 76230126 -9465628 + AluSx SINE Alu 1 312 0 386 39 19 0 chr15 76231583 76231635 -9464119 + (TG)n Simple_repeat Simple_repeat 2 54 0 2314 93 0 0 chr15 76233703 76234014 -9461740 - AluSx SINE Alu -1 311 1 22 0 0 0 chr15 76234996 76235018 -9460736 + GC_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr15 76235367 76235416 -9460338 + GC_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr15 76235640 76235676 -9460078 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr15 76237691 76237712 -9458042 + (A)n Simple_repeat Simple_repeat 1 21 0 248 280 0 0 chr15 76239625 76239675 -9456079 + G-rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr15 76240038 76240066 -9455688 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 76244926 76244946 -9450808 + (T)n Simple_repeat Simple_repeat 1 20 0 741 251 41 5 chr15 76245806 76245999 -9449755 + MIR SINE MIR 64 262 0 23 68 0 0 chr15 76248725 76248769 -9446985 + AT_rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr15 76249714 76249753 -9446001 + AT_rich Low_complexity Low_complexity 1 39 0 4092 92 22 2 chr15 76250237 76250838 -9444916 + L1MA2 LINE L1 5692 6304 0 217 278 83 0 chr15 76251170 76251242 -9444512 + L3 LINE CR1 1304 1381 -196 226 208 0 117 chr15 76251337 76251414 -9444340 - MER5B DNA MER1_type 0 178 111 409 281 36 30 chr15 76251936 76252103 -9443651 - Charlie8 DNA MER1_type -2142 275 108 259 263 219 51 chr15 76252232 76252369 -9443385 - MER5A DNA MER1_type -15 174 15 485 312 96 10 chr15 76252695 76252894 -9442860 - MIR SINE MIR -27 235 20 973 208 180 16 chr15 76253791 76254041 -9441713 - AluSg SINE Alu -9 291 1 1898 154 0 10 chr15 76254076 76254374 -9441380 + AluJo SINE Alu 2 296 -16 2256 103 0 3 chr15 76254571 76254872 -9440882 + AluSg SINE Alu 1 300 -10 379 236 36 9 chr15 76255314 76255424 -9440330 - MLT1J LTR MaLR 0 511 399 727 181 0 0 chr15 76255444 76255593 -9440161 + L1ME LINE L1 4612 4760 -1386 1867 116 0 44 chr15 76255616 76255891 -9439863 - AluSx SINE Alu -49 263 1 219 36 0 0 chr15 76255905 76255933 -9439821 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1530 187 10 17 chr15 76255936 76256225 -9439529 - AluJo SINE Alu -25 287 1 586 286 71 0 chr15 76258034 76258216 -9437538 - MIR SINE MIR -21 241 47 27 29 0 0 chr15 76258488 76258522 -9437232 + AT_rich Low_complexity Low_complexity 1 34 0 304 253 44 11 chr15 76258642 76258733 -9437021 - L1MC4 LINE L1 -1339 6703 6610 544 246 77 48 chr15 76259564 76259836 -9435918 + L1ME LINE L1 5529 5808 -313 1927 130 3 3 chr15 76260183 76260506 -9435248 + AluSx SINE Alu 1 323 0 244 263 197 32 chr15 76260605 76260767 -9434987 + MLT1J2 LTR MaLR 27 175 -275 1994 124 7 10 chr15 76260974 76261280 -9434474 - AluSx SINE Alu -5 307 3 5169 118 26 11 chr15 76261285 76262170 -9433584 - L1PB2 LINE L1 0 6151 5254 447 313 28 63 chr15 76262175 76262539 -9433215 - HAL1 LINE L1 -2132 375 25 291 292 80 26 chr15 76263528 76263641 -9432113 + MIR SINE MIR 110 228 -34 1806 180 0 7 chr15 76264451 76264751 -9431003 + AluJo SINE Alu 3 300 -12 2056 118 7 0 chr15 76264955 76265275 -9430479 - AluSx SINE Alu 0 324 3 233 89 22 0 chr15 76265624 76265669 -9430085 + (TA)n Simple_repeat Simple_repeat 1 46 0 5100 116 0 0 chr15 76267142 76267805 -9427949 - L1PA10 LINE L1 0 6168 5491 2198 119 0 0 chr15 76267805 76268098 -9427656 - AluSq SINE Alu -20 293 1 5100 116 0 0 chr15 76268098 76268490 -9427264 - L1PA10 LINE L1 -676 5492 5101 1695 180 10 84 chr15 76268541 76268935 -9426819 - MLT1A1 LTR MaLR 0 365 1 205 329 26 13 chr15 76269771 76269847 -9425907 + MIR SINE MIR 40 116 -92 315 104 0 0 chr15 76270006 76270054 -9425700 + (TC)n Simple_repeat Simple_repeat 1 48 0 259 273 45 15 chr15 76270426 76270492 -9425262 + MER91A DNA MER1_type 121 188 -8 735 191 109 0 chr15 76270561 76270708 -9425046 - AluJo SINE Alu -2 300 138 265 236 0 0 chr15 76271857 76271912 -9423842 + LTR16B LTR ERVL 403 457 -7 1952 130 22 0 chr15 76272072 76272349 -9423405 - AluSx SINE Alu -27 285 3 567 24 24 12 chr15 76272367 76272449 -9423305 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 795 170 0 15 chr15 76272478 76272613 -9423141 - AluJo SINE Alu -169 133 1 252 0 0 0 chr15 76273201 76273229 -9422525 + (A)n Simple_repeat Simple_repeat 1 28 0 306 125 0 0 chr15 76275935 76275983 -9419771 + (A)n Simple_repeat Simple_repeat 1 48 0 460 241 9 43 chr15 76276104 76276220 -9419534 - MER5B DNA MER1_type -1 177 66 184 274 48 0 chr15 76276346 76276408 -9419346 + MIR SINE MIR 75 139 -69 1762 193 0 7 chr15 76277453 76277759 -9417995 + AluSx SINE Alu 3 306 -6 306 0 0 0 chr15 76277898 76277932 -9417822 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 263 35 0 chr15 76277978 76278035 -9417719 + MER5A DNA MER1_type 131 189 0 189 0 0 0 chr15 76278791 76278812 -9416942 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2023 82 8 0 chr15 76278814 76279081 -9416673 - AluSc SINE Alu -32 277 9 227 321 0 12 chr15 76279417 76279501 -9416253 + MIR SINE MIR 152 234 -28 285 29 0 0 chr15 76280356 76280390 -9415364 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 181 321 36 0 chr15 76280850 76280934 -9414820 - MIR SINE MIR -23 239 153 246 174 0 0 chr15 76280947 76280993 -9414761 + (CA)n Simple_repeat Simple_repeat 1 46 0 1026 168 0 67 chr15 76281917 76282125 -9413629 - AluJo SINE Alu -7 305 112 211 225 0 125 chr15 76283146 76283226 -9412528 + L3 LINE CR1 1244 1313 -264 1742 144 48 45 chr15 76283730 76284104 -9411650 - THE1C LTR MaLR 0 375 1 456 317 19 15 chr15 76284125 76284330 -9411424 - MER57B LTR ERV1 -166 268 63 2080 150 0 0 chr15 76285191 76285485 -9410269 - AluSx SINE Alu -16 296 3 287 238 12 0 chr15 76285525 76285605 -9410149 - HAL1 LINE L1 -309 2198 2118 1592 266 102 73 chr15 76285611 76285828 -9409926 - HAL1 LINE L1 -556 1951 1742 5510 47 1 0 chr15 76285828 76286498 -9409256 - L1PA5 LINE L1 -1 6153 5480 2029 148 21 29 chr15 76286498 76286876 -9408878 - THE1C LTR MaLR 0 375 1 1592 266 102 73 chr15 76286882 76288001 -9407753 - HAL1 LINE L1 -765 1742 576 324 299 117 29 chr15 76288001 76288138 -9407616 + L1MA5 LINE L1 852 1000 -5779 4381 216 16 16 chr15 76288204 76289365 -9406389 + L1MA5 LINE L1 1443 2603 -4246 * 10367 170 32 40 chr15 76289360 76291132 -9404622 + L1MA5 LINE L1 3529 5314 -1688 1272 219 30 10 chr15 76291132 76291434 -9404320 + AluJo SINE Alu 3 310 -2 10367 170 32 40 chr15 76291434 76291816 -9403938 + L1MA5 LINE L1 5314 5698 -1304 2029 127 0 0 chr15 76291816 76292092 -9403662 + AluSx SINE Alu 1 276 -36 10367 170 32 40 chr15 76292092 76293056 -9402698 + L1MA5 LINE L1 5698 6632 -370 313 268 52 21 chr15 76293124 76293221 -9402533 - L2 LINE L2 -20 3293 3194 368 252 59 8 chr15 76294588 76294707 -9401047 + MIR3 SINE MIR 12 136 -72 253 233 89 0 chr15 76297080 76297170 -9398584 - MIR SINE MIR -24 238 141 24 32 0 0 chr15 76297340 76297371 -9398383 + AT_rich Low_complexity Low_complexity 1 31 0 186 281 0 0 chr15 76298073 76298137 -9397617 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chr15 76298798 76298820 -9396934 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 76298897 76298928 -9396826 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr15 76299054 76299088 -9396666 + AT_rich Low_complexity Low_complexity 1 34 0 239 129 29 29 chr15 76299731 76299801 -9395953 + (TA)n Simple_repeat Simple_repeat 2 71 0 35 24 0 0 chr15 76299972 76300014 -9395740 + AT_rich Low_complexity Low_complexity 1 42 0 195 69 0 0 chr15 76303127 76303156 -9392598 + (CATAC)n Simple_repeat Simple_repeat 1 29 0 288 276 0 13 chr15 76308291 76308367 -9387387 + CT-rich Low_complexity Low_complexity 2 76 0 716 194 0 11 chr15 76310055 76310230 -9385524 + GA-rich Low_complexity Low_complexity 4 176 0 264 149 0 0 chr15 76310333 76310380 -9385374 + (TC)n Simple_repeat Simple_repeat 1 47 0 1517 133 109 0 chr15 76310380 76310636 -9385118 - AluJo SINE Alu -27 285 2 335 308 29 0 chr15 76360765 76360869 -9334885 - MIR SINE MIR -78 184 78 197 273 0 18 chr15 76362680 76362735 -9333019 + MIR SINE MIR 54 107 -101 683 269 61 14 chr15 76362913 76363125 -9332629 - MIR SINE MIR 0 262 41 4307 30 2 0 chr15 76363423 76363928 -9331826 + L1PA2 LINE L1 5637 6142 -13 197 33 33 0 chr15 76363931 76363961 -9331793 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 754 234 22 48 chr15 76364023 76364093 -9331661 + MLT1E1 LTR MaLR 417 487 -167 1783 191 0 6 chr15 76364093 76364407 -9331347 + AluSx SINE Alu 1 312 0 754 234 22 48 chr15 76364407 76364563 -9331191 + MLT1E1 LTR MaLR 487 637 -17 685 159 53 0 chr15 76365093 76365225 -9330529 - L1PA11 LINE L1 -2 6172 6034 328 291 159 13 chr15 76365559 76366023 -9329731 + L1M4 LINE L1 3746 4277 -1869 658 244 0 0 chr15 76368013 76368140 -9327614 + FLAM_C SINE Alu 1 127 -16 24 67 0 0 chr15 76369046 76369091 -9326663 + AT_rich Low_complexity Low_complexity 1 45 0 546 263 146 14 chr15 76369445 76369658 -9326096 - MIR SINE MIR -7 255 15 229 300 180 13 chr15 76370891 76371041 -9324713 - MER5A DNA MER1_type -14 175 1 608 288 47 27 chr15 76371812 76372215 -9323539 - L1ME4a LINE L1 -135 5986 5576 292 209 0 70 chr15 76372527 76372613 -9323141 - L1MA9 LINE L1 -33 6279 6200 452 232 72 0 chr15 76372904 76373042 -9322712 + MER104 DNA Tc2 30 177 -3 261 0 0 0 chr15 76374161 76374190 -9321564 + (CATTT)n Simple_repeat Simple_repeat 2 30 0 381 328 158 20 chr15 76374995 76375541 -9320213 + L2 LINE L2 219 839 -2475 259 325 98 24 chr15 76376836 76376959 -9318795 - MIR SINE MIR -110 152 21 327 244 11 22 chr15 76377010 76377100 -9318654 - L2 LINE L2 0 3313 3225 194 280 0 0 chr15 76380424 76380474 -9315280 - L2 LINE L2 0 3313 3264 335 197 68 68 chr15 76381119 76381236 -9314518 + MIR SINE MIR 36 152 -110 2243 114 0 0 chr15 76384389 76384679 -9311075 - AluSx SINE Alu -17 295 6 419 289 32 13 chr15 76385043 76385199 -9310555 + MIR SINE MIR 104 262 0 233 288 61 30 chr15 76386225 76386357 -9309397 + MIR SINE MIR 50 185 -77 325 337 41 37 chr15 76387486 76387732 -9308022 + L1ME4a LINE L1 5717 5963 -158 279 273 8 41 chr15 76388487 76388608 -9307146 + MARNA DNA Mariner 452 568 -18 468 255 35 77 chr15 76389076 76389335 -9306419 - MER112 DNA MER1_type -7 253 6 1896 120 73 53 chr15 76389387 76389744 -9306010 - THE1B LTR MaLR 0 364 1 616 136 59 25 chr15 76390467 76390585 -9305169 + THE1C LTR MaLR 1 122 -253 575 152 9 9 chr15 76390570 76390675 -9305079 + THE1C LTR MaLR 271 375 0 * 479 254 153 0 chr15 76390753 76390942 -9304812 - MIR SINE MIR -12 250 33 333 295 128 13 chr15 76391397 76391553 -9304201 + L2 LINE L2 3112 3285 -28 913 265 155 18 chr15 76393602 76394048 -9301706 - MLT1J LTR MaLR -4 507 1 195 216 147 59 chr15 76395532 76395634 -9300120 - MER5B DNA MER1_type 0 178 68 252 0 0 0 chr15 76395640 76395668 -9300086 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2152 100 4 0 chr15 76395671 76395950 -9299804 - AluSx SINE Alu -32 280 1 814 58 0 0 chr15 76396107 76396210 -9299544 - L1PA8 LINE L1 -206 5966 5864 333 278 113 0 chr15 76396835 76396950 -9298804 - MIR SINE MIR -54 208 81 28 48 0 0 chr15 76397585 76397627 -9298127 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr15 76397660 76397691 -9298063 + AT_rich Low_complexity Low_complexity 1 31 0 1443 87 0 20 chr15 76399541 76399737 -9296017 - MSTD LTR MaLR -204 192 1 280 250 0 40 chr15 76399775 76399875 -9295879 + L2 LINE L2 3218 3313 0 995 208 0 0 chr15 76399888 76400066 -9295688 + MER5B DNA MER1_type 1 178 0 370 256 192 8 chr15 76400083 76400208 -9295546 + MER5A DNA MER1_type 10 157 -32 216 167 0 0 chr15 76401616 76401664 -9294090 + (CA)n Simple_repeat Simple_repeat 1 48 0 366 248 74 0 chr15 76402753 76402874 -9292880 + MIR SINE MIR 49 178 -84 423 282 57 53 chr15 76403441 76403650 -9292104 - MLT1J LTR MaLR -131 380 171 1843 167 20 0 chr15 76405023 76405322 -9290432 - AluSx SINE Alu -7 305 1 1327 230 63 37 chr15 76405324 76405845 -9289909 - MLT1E2 LTR MaLR -1 504 1 451 307 171 49 chr15 76407102 76407616 -9288138 - L2 LINE L2 -466 2848 2272 354 197 127 0 chr15 76407747 76407818 -9287936 + MLT1H LTR MaLR 80 159 -390 2722 181 13 35 chr15 76407890 76408426 -9287328 + MER6A DNA MER2_type 2 525 -80 292 170 0 0 chr15 76408439 76408492 -9287262 - MER6 DNA MER2_type -80 785 733 406 165 82 35 chr15 76408495 76408580 -9287174 + MER6 DNA MER2_type 777 865 0 457 132 13 13 chr15 76411306 76411382 -9284372 - AluJ/FLAM SINE Alu -226 86 11 1348 232 40 14 chr15 76411395 76411744 -9284010 - L1M4 LINE L1 -1119 5027 4670 208 197 0 30 chr15 76412194 76412260 -9283494 + (TA)n Simple_repeat Simple_repeat 2 65 0 319 280 60 0 chr15 76413171 76413271 -9282483 - L2 LINE L2 -1 3312 3207 22 0 0 0 chr15 76413387 76413409 -9282345 + GC_rich Low_complexity Low_complexity 1 22 0 1411 115 7 7 chr15 76413853 76414121 -9281633 - L1P4 LINE L1 -674 5492 5225 550 214 108 118 chr15 76414122 76414565 -9281189 - MLT1G LTR MaLR 0 624 68 209 348 0 73 chr15 76415381 76415545 -9280209 + L2 LINE L2 3116 3267 -46 22 0 0 0 chr15 76415894 76415916 -9279838 + AT_rich Low_complexity Low_complexity 1 22 0 227 216 54 54 chr15 76466159 76466270 -9229484 - LTR33A LTR ERVL -2 521 411 2331 118 0 0 chr15 76466315 76466621 -9229133 + AluSx SINE Alu 1 306 -6 507 260 110 60 chr15 76466743 76467043 -9228711 - LTR50 LTR ERVL -478 317 3 2044 114 0 24 chr15 76467281 76467597 -9228157 - AluSx SINE Alu 0 309 1 281 296 0 0 chr15 76467756 76467844 -9227910 - MERVL LTR ERVL -158 5327 5240 1515 300 72 38 chr15 76467870 76468561 -9227193 - MERVL LTR ERVL -574 5190 4476 564 268 6 6 chr15 76469416 76469573 -9226181 + MIR SINE MIR 63 219 -43 228 341 147 32 chr15 76469813 76470376 -9225378 + L3 LINE CR1 943 1570 -7 2219 112 0 10 chr15 76472605 76472917 -9222837 + AluSc SINE Alu 1 309 0 630 103 0 28 chr15 76472943 76473050 -9222704 + AluSg/x SINE Alu 206 309 0 291 93 0 0 chr15 76473620 76473663 -9222091 + (GGA)n Simple_repeat Simple_repeat 3 45 0 25 75 0 0 chr15 76475479 76475532 -9220222 + AT_rich Low_complexity Low_complexity 1 53 0 1593 123 101 4 chr15 76476135 76476403 -9219351 - L1PA12 LINE L1 -299 5869 5576 2249 63 63 3 chr15 76476915 76477200 -9218554 + AluY SINE Alu 3 304 -7 22 35 0 0 chr15 76478235 76478264 -9217490 + AT_rich Low_complexity Low_complexity 1 29 0 209 139 116 0 chr15 76478985 76479028 -9216726 - L2 LINE L2 -1 3312 3265 289 289 53 0 chr15 76479734 76479810 -9215944 + MIR3 SINE MIR 118 197 -11 22 0 0 0 chr15 76480650 76480672 -9215082 + AT_rich Low_complexity Low_complexity 1 22 0 884 189 11 27 chr15 76482277 76482462 -9213292 - AluJo SINE Alu -10 302 121 27 29 0 0 chr15 76482744 76482778 -9212976 + AT_rich Low_complexity Low_complexity 1 34 0 374 291 60 0 chr15 76484247 76484381 -9211373 - L2 LINE L2 0 3313 3172 547 66 13 13 chr15 76486773 76486849 -9208905 + MER4E LTR ERV1 1 76 -703 3130 59 8 71 chr15 76488628 76489106 -9206648 - LTR7 LTR ERV1 -2 448 1 2501 75 64 13 chr15 76489106 76489479 -9206275 - HERVH LTR ERV1 0 7713 7322 1215 156 18 9 chr15 76489477 76489695 -9206059 - HERVH LTR ERV1 -1894 5819 5600 * 3540 148 2 3 chr15 76489696 76490302 -9205452 - HERVH LTR ERV1 -2564 5149 4488 3486 100 0 4 chr15 76490304 76490794 -9204960 - HERVH LTR ERV1 -3720 3993 3506 20152 95 63 37 chr15 76490799 76494006 -9201748 - HERVH LTR ERV1 -4423 3290 1 3468 64 0 7 chr15 76494008 76494459 -9201295 - LTR7 LTR ERV1 -2 448 1 871 243 41 18 chr15 76496285 76496503 -9199251 + MER58A DNA MER1_type 1 223 -1 905 258 34 15 chr15 76497750 76498018 -9197736 + AluSg SINE Alu 38 310 0 679 93 0 28 chr15 76498044 76498151 -9197603 + AluSg/x SINE Alu 209 312 0 241 237 53 66 chr15 76499113 76499189 -9196565 + L2 LINE L2 3193 3267 -46 1126 286 16 7 chr15 76499191 76499499 -9196255 - MER93a LTR ERV1 0 402 92 251 189 19 19 chr15 76499820 76499873 -9195881 - MIR SINE MIR -103 105 53 280 325 35 66 chr15 76499903 76500261 -9195493 + L3 LINE CR1 1155 1555 -22 588 296 20 103 chr15 76501617 76501968 -9193786 + MER102b DNA MER1_type 10 331 -10 306 376 7 0 chr15 76502254 76502403 -9193351 - L2 LINE L2 -236 3036 2887 181 246 0 53 chr15 76504037 76504094 -9191660 + L3 LINE CR1 1454 1507 -70 194 320 153 41 chr15 76505359 76505900 -9189854 + L2 LINE L2 2410 3038 -234 216 274 0 0 chr15 76505984 76506035 -9189719 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 592 149 133 14 chr15 76506245 76506416 -9189338 - L1M4 LINE L1 -1315 4831 4645 201 156 0 0 chr15 76508326 76508358 -9187396 + (CATA)n Simple_repeat Simple_repeat 4 35 0 1443 84 40 26 chr15 76508713 76508939 -9186815 - L1MA9 LINE L1 0 6312 6084 351 44 0 0 chr15 76509735 76509780 -9185974 + (CA)n Simple_repeat Simple_repeat 2 46 0 2245 109 0 10 chr15 76509864 76510168 -9185586 - AluY SINE Alu -7 304 4 32 26 0 0 chr15 76510270 76510309 -9185445 + AT_rich Low_complexity Low_complexity 1 39 0 36 53 0 0 chr15 76511561 76511618 -9184136 + AT_rich Low_complexity Low_complexity 1 57 0 4997 197 21 31 chr15 76511622 76513080 -9182674 + L1MD1 LINE L1 4795 6238 -4 248 254 216 0 chr15 76513186 76513320 -9182434 + L1ME1 LINE L1 2006 2168 -4228 2526 117 18 5 chr15 76513351 76513777 -9181977 + L1M2 LINE L1 2256 2719 -4130 4032 14 0 0 chr15 76513778 76514427 -9181327 - L1PA3 LINE L1 -582 5573 4925 5303 27 3 0 chr15 76514428 76515012 -9180742 + L1PA3 LINE L1 5570 6155 0 1461 220 57 94 chr15 76515012 76515762 -9179992 + L1ME1 LINE L1 4975 5693 -542 2259 76 42 0 chr15 76515762 76516050 -9179704 + AluSg SINE Alu 2 301 -9 1461 220 57 94 chr15 76516050 76516315 -9179439 + L1ME1 LINE L1 5693 5966 -269 519 60 0 0 chr15 76516923 76516990 -9178764 + (GGA)n Simple_repeat Simple_repeat 2 68 0 3342 75 2 14 chr15 76517092 76517535 -9178219 + MER4E LTR ERV1 329 766 0 292 22 22 22 chr15 76518169 76518215 -9177539 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 22 70 0 0 chr15 76520787 76520830 -9174924 + AT_rich Low_complexity Low_complexity 1 43 0 1103 117 13 0 chr15 76521114 76521268 -9174486 - AluSx SINE Alu -21 289 134 316 271 47 0 chr15 76521277 76521362 -9174392 - L1MC4 LINE L1 -1340 6702 6614 * 363 255 0 21 chr15 76521288 76521382 -9174372 + L1MC4 LINE L1 6614 6705 -1337 678 155 10 0 chr15 76521412 76521515 -9174239 - AluSx SINE Alu -179 133 30 300 259 24 0 chr15 76522343 76522477 -9173277 + C-rich Low_complexity Low_complexity 1 137 0 236 233 267 0 chr15 76527959 76528049 -9167705 + L2 LINE L2 3198 3311 -2 205 294 98 29 chr15 76532053 76532155 -9163599 + L2 LINE L2 3159 3267 -5 180 97 0 0 chr15 76532190 76532221 -9163533 + (T)n Simple_repeat Simple_repeat 1 31 0 630 228 56 6 chr15 76533345 76533507 -9162247 + MLT2C1 LTR ERVL 5 174 -223 1990 134 38 22 chr15 76533507 76533951 -9161803 + LTR35 LTR ERV1 1 542 -76 906 198 30 60 chr15 76534040 76534088 -9161666 - MLT2C1 LTR ERVL -2 395 347 633 43 21 11 chr15 76534088 76534182 -9161572 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 906 198 30 60 chr15 76534182 76534365 -9161389 - MLT2C1 LTR ERVL -50 347 171 253 158 0 0 chr15 76534365 76534403 -9161351 - LTR35 LTR ERV1 0 618 581 313 268 246 27 chr15 76535314 76535497 -9160257 + MIR SINE MIR 13 235 -27 232 237 309 0 chr15 76535526 76535623 -9160131 + L2 LINE L2 3145 3271 -1 2398 119 13 44 chr15 76535827 76536214 -9159540 - THE1C LTR MaLR 0 375 1 1918 237 124 28 chr15 76536515 76537056 -9158698 - MLT1E LTR MaLR 0 593 1 1502 46 0 0 chr15 76537742 76537915 -9157839 + AluY SINE Alu 129 301 -10 1366 220 77 3 chr15 76538259 76538609 -9157145 + Charlie4a DNA MER1_type 83 458 -50 1101 148 12 0 chr15 76538880 76539042 -9156712 + FAM SINE Alu 6 169 -16 263 339 0 0 chr15 76539042 76539154 -9156600 - L1MC4 LINE L1 -17 8025 7914 670 327 11 14 chr15 76539231 76539509 -9156245 + L2 LINE L2 62 338 -2976 830 286 21 17 chr15 76542096 76542403 -9153351 - L1ME LINE L1 -344 5777 5473 356 316 66 7 chr15 76543679 76543815 -9151939 - MIR SINE MIR 0 262 119 210 245 19 0 chr15 76544345 76544398 -9151356 + GA-rich Low_complexity Low_complexity 4 57 0 370 382 26 21 chr15 76544954 76545181 -9150573 + MIR SINE MIR 2 230 -32 225 119 0 0 chr15 76545720 76545762 -9149992 + (T)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr15 76545824 76545848 -9149906 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr15 76547154 76547191 -9148563 + AT_rich Low_complexity Low_complexity 1 37 0 215 61 30 0 chr15 76548920 76548953 -9146801 + (GA)n Simple_repeat Simple_repeat 1 34 0 200 368 105 9 chr15 76552721 76552835 -9142919 - L2 LINE L2 -1 3271 3147 1838 187 8 37 chr15 76553036 76553416 -9142338 + MLT1B LTR MaLR 1 370 -20 2169 107 45 28 chr15 76553416 76553772 -9141982 + THE1B LTR MaLR 3 364 0 1838 187 8 37 chr15 76553772 76553793 -9141961 + MLT1B LTR MaLR 370 390 0 712 295 176 0 chr15 76554087 76554416 -9141338 + L2 LINE L2 2890 3276 -37 287 239 14 0 chr15 76554442 76554513 -9141241 + MIR SINE MIR 170 241 -21 221 170 43 21 chr15 76555021 76555068 -9140686 - MIR SINE MIR -105 157 110 379 310 136 0 chr15 76555219 76555403 -9140351 + MER58A DNA MER1_type 1 209 -15 1516 170 28 68 chr15 76555756 76556079 -9139675 + AluJb SINE Alu 1 310 -2 352 277 116 32 chr15 76556663 76556921 -9138833 + L1MEc LINE L1 1972 2191 -4024 338 267 34 19 chr15 76556931 76557137 -9138617 + L1MEc LINE L1 2179 2387 -3828 619 258 0 6 chr15 76557728 76557887 -9137867 - MER97c DNA MER1_type? -911 179 22 469 153 61 0 chr15 76558077 76558175 -9137579 - L1MA9 LINE L1 -38 6274 6171 377 294 24 24 chr15 76558937 76559063 -9136691 - MIR SINE MIR -97 165 40 498 189 277 77 chr15 76559330 76559615 -9136139 + MER2 DNA MER2_type 2 343 -2 484 233 118 60 chr15 76560524 76560872 -9134882 - HAL1b LINE L1 -232 1116 749 21 36 0 0 chr15 76560895 76560923 -9134831 + AT_rich Low_complexity Low_complexity 1 28 0 393 269 121 66 chr15 76560923 76560993 -9134761 - HAL1b LINE L1 -592 756 691 2068 135 3 23 chr15 76560993 76561296 -9134458 - AluSp SINE Alu -16 297 1 393 269 121 66 chr15 76561296 76561530 -9134224 - HAL1b LINE L1 -657 691 435 1594 188 10 7 chr15 76561713 76562022 -9133732 - AluJo SINE Alu 0 312 3 371 163 12 25 chr15 76562035 76562115 -9133639 - HAL1b LINE L1 -835 513 435 2550 186 21 23 chr15 76562144 76562426 -9133328 + MER34 LTR ERV1 27 309 -233 2129 96 0 14 chr15 76562426 76562744 -9133010 - AluSc SINE Alu 0 309 14 2550 186 21 23 chr15 76562744 76562977 -9132777 + MER34 LTR ERV1 309 541 -1 189 245 0 0 chr15 76562982 76563031 -9132723 + (CATA)n Simple_repeat Simple_repeat 4 52 0 2147 155 3 5 chr15 76565402 76565769 -9129985 + MER47A DNA MER2_type 1 366 0 29 47 0 0 chr15 76566646 76566689 -9129065 + AT_rich Low_complexity Low_complexity 1 43 0 1546 91 5 0 chr15 76567996 76568195 -9127559 + AluSq SINE Alu 102 301 -12 25 31 0 0 chr15 76568233 76568265 -9127489 + AT_rich Low_complexity Low_complexity 1 32 0 384 186 21 31 chr15 76568293 76568390 -9127364 - Charlie1 DNA MER1_type 0 2761 2666 221 0 35 0 chr15 76568390 76568419 -9127335 + (TA)n Simple_repeat Simple_repeat 1 30 0 233 240 0 42 chr15 76568423 76568519 -9127235 - L1MC4 LINE L1 -1339 6703 6612 452 66 0 104 chr15 76568542 76568725 -9127029 + (TA)n Simple_repeat Simple_repeat 1 164 0 1473 290 89 43 chr15 76568863 76569149 -9126605 - HERVL LTR ERVL -1947 3707 3436 2302 104 0 0 chr15 76569149 76569448 -9126306 - AluSx SINE Alu -13 299 1 1473 290 89 43 chr15 76569448 76570448 -9125306 - HERVL LTR ERVL -2218 3436 2350 182 36 0 36 chr15 76571080 76571108 -9124646 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 443 270 118 34 chr15 76571350 76571528 -9124226 - LTR50 LTR ERVL -602 193 1 423 330 48 5 chr15 76571646 76571834 -9123920 + MIR SINE MIR 65 260 -2 1982 124 3 3 chr15 76571854 76572164 -9123590 - AluSx SINE Alu 0 310 1 908 149 6 65 chr15 76573048 76573264 -9122490 + AluSg/x SINE Alu 127 332 0 269 326 0 21 chr15 76574707 76574802 -9120952 + L2 LINE L2 2893 2985 -328 283 222 128 94 chr15 76574821 76575001 -9120753 + L2 LINE L2 3090 3275 -38 2354 68 0 10 chr15 76575561 76575854 -9119900 - AluY SINE Alu -21 290 1 23 54 0 0 chr15 76576176 76576213 -9119541 + AT_rich Low_complexity Low_complexity 1 37 0 21 100 0 0 chr15 76577214 76577284 -9118470 + AT_rich Low_complexity Low_complexity 1 70 0 23 78 0 0 chr15 76577688 76577739 -9118015 + AT_rich Low_complexity Low_complexity 1 51 0 230 291 73 0 chr15 76577917 76578027 -9117727 + L1ME LINE L1 5742 5859 -262 1983 119 7 20 chr15 76578114 76578409 -9117345 + AluSx SINE Alu 1 291 -21 534 16 0 0 chr15 76578409 76578472 -9117282 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 181 386 140 21 chr15 76579095 76579424 -9116330 - L2 LINE L2 0 3272 2905 3198 194 101 22 chr15 76579470 76580231 -9115523 + MER21B LTR ERV1 2 822 -41 4097 175 4 14 chr15 76580415 76581227 -9114527 + L1MB3 LINE L1 5380 6183 0 241 163 0 0 chr15 76581475 76581518 -9114236 - L2 LINE L2 -574 2740 2698 10102 129 31 159 chr15 76581599 76583625 -9112129 + Tigger1 DNA MER2_type 1 2285 -133 2107 113 3 0 chr15 76583625 76583936 -9111818 + AluSp SINE Alu 1 312 0 10102 129 31 159 chr15 76583936 76584461 -9111293 + Tigger1 DNA MER2_type 2285 2176 -242 1644 132 4 8 chr15 76584461 76584696 -9111058 - AluSx SINE Alu -77 235 2 10102 129 31 159 chr15 76584696 76584903 -9110851 + Tigger1 DNA MER2_type 2175 2407 -11 318 341 34 10 chr15 76584910 76585118 -9110636 - L2 LINE L2 -393 2921 2709 186 262 0 0 chr15 76585228 76585270 -9110484 + L2 LINE L2 2584 2625 -689 374 314 78 104 chr15 76585398 76585859 -9109895 + L2 LINE L2 2818 3266 -6 210 158 0 0 chr15 76586593 76586631 -9109123 + T-rich Low_complexity Low_complexity 1 38 0 5714 84 37 5 chr15 76586634 76587501 -9108253 - L1PB1 LINE L1 -3 6148 5254 627 289 50 14 chr15 76587684 76587902 -9107852 - MIR SINE MIR -8 254 29 3584 92 25 92 chr15 76588557 76589232 -9106522 + L1MA3 LINE L1 5676 6305 0 219 167 0 0 chr15 76590028 76590070 -9105684 + GA-rich Low_complexity Low_complexity 2 43 0 366 244 0 0 chr15 76590988 76591066 -9104688 + MER33 DNA MER1_type 3 80 -244 2070 163 92 0 chr15 76591080 76591472 -9104282 - MSTA LTR MaLR 0 428 1 234 0 0 0 chr15 76591578 76591604 -9104150 + (T)n Simple_repeat Simple_repeat 1 26 0 295 306 75 65 chr15 76591645 76591844 -9103910 - L2 LINE L2 -43 3229 3029 208 394 67 11 chr15 76592037 76592217 -9103537 - L2 LINE L2 -443 2871 2682 187 380 101 8 chr15 76592383 76592620 -9103134 - L2 LINE L2 -928 2386 2128 2185 83 3 21 chr15 76592846 76593136 -9102618 - AluY SINE Alu -19 292 8 22 35 0 0 chr15 76593147 76593176 -9102578 + AT_rich Low_complexity Low_complexity 1 29 0 237 65 0 0 chr15 76594653 76594684 -9101070 + (T)n Simple_repeat Simple_repeat 1 31 0 3353 145 18 113 chr15 76595954 76596520 -9099234 + MER44D DNA MER2_type 2 476 -2111 207 69 0 0 chr15 76596520 76596549 -9099205 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3353 145 18 113 chr15 76596549 76596760 -9098994 + MER44D DNA MER2_type 476 705 0 321 314 36 7 chr15 76596773 76596913 -9098841 - MLT1J2 LTR MaLR -44 406 263 445 178 42 34 chr15 76596993 76597111 -9098643 - MLT1J2 LTR MaLR -303 147 29 2258 75 0 7 chr15 76597163 76597447 -9098307 + AluY SINE Alu 1 311 0 241 35 0 0 chr15 76597447 76597476 -9098278 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 199 324 70 14 chr15 76597822 76597893 -9097861 - L2 LINE L2 0 3313 3239 1336 159 0 90 chr15 76598184 76598473 -9097281 + AluJo SINE Alu 50 312 0 398 360 16 11 chr15 76598793 76598979 -9096775 - MIR SINE MIR -3 259 73 249 33 0 0 chr15 76599063 76599093 -9096661 + (TG)n Simple_repeat Simple_repeat 2 31 0 220 296 107 65 chr15 76599245 76599414 -9096340 + MIR3 SINE MIR 8 183 -25 233 256 23 0 chr15 76600113 76600199 -9095555 + CT-rich Low_complexity Low_complexity 3 90 0 605 258 164 13 chr15 76600662 76600887 -9094867 + MIR SINE MIR 2 260 -2 344 261 73 60 chr15 76601712 76601930 -9093824 - L1MC/D LINE L1 -588 5533 5313 331 330 70 40 chr15 76603278 76603478 -9092276 - MIR SINE MIR -3 259 54 2430 83 3 0 chr15 76603508 76603810 -9091944 + AluSp SINE Alu 1 303 -10 180 125 0 0 chr15 76604516 76604548 -9091206 + (A)n Simple_repeat Simple_repeat 1 32 0 197 338 12 38 chr15 76604725 76604805 -9090949 - L2 LINE L2 -1 3312 3235 485 229 59 0 chr15 76605317 76605470 -9090284 - L1MC3 LINE L1 -164 7621 7460 190 311 33 33 chr15 76605739 76605829 -9089925 - L2 LINE L2 0 3313 3224 191 330 102 23 chr15 76606292 76606380 -9089374 + MIR SINE MIR 46 140 -68 249 33 0 0 chr15 76606488 76606518 -9089236 + (CA)n Simple_repeat Simple_repeat 1 30 0 392 217 86 26 chr15 76607100 76607252 -9088502 - MER103 DNA DNA -1 165 5 2502 70 0 6 chr15 76607640 76607952 -9087802 - AluY SINE Alu -1 310 1 1469 219 86 103 chr15 76608334 76609092 -9086662 + LTR1B LTR ERV1 1 745 -81 405 196 147 10 chr15 76609176 76609278 -9086476 + LTR28 LTR ERV1 905 1020 0 402 287 176 11 chr15 76609285 76609473 -9086281 - MIR SINE MIR -11 251 33 238 344 116 36 chr15 76611226 76611450 -9084304 + L2 LINE L2 2594 2835 -479 294 310 0 0 chr15 76611512 76611583 -9084171 + L2 LINE L2 3243 3313 0 2430 60 94 0 chr15 76613444 76613775 -9081979 - L1PA4 LINE L1 -3 6152 5791 3615 30 15 0 chr15 76613775 76614238 -9081516 + L1P LINE L1 3578 4047 -2099 204 306 74 37 chr15 76615036 76615144 -9080610 + L2 LINE L2 3198 3309 -4 267 386 35 13 chr15 76615202 76615384 -9080370 + MIR SINE MIR 19 204 -43 446 307 64 37 chr15 76616603 76616821 -9078933 + MIR SINE MIR 20 243 -19 2312 64 7 0 chr15 76616954 76617252 -9078502 + AluY SINE Alu 1 300 -11 262 324 56 34 chr15 76617444 76617623 -9078131 + MIR3 SINE MIR 12 194 -14 236 373 32 0 chr15 76617892 76618018 -9077736 - MIR SINE MIR -6 256 127 224 395 44 9 chr15 76618146 76618260 -9077494 - MIR SINE MIR -75 133 16 288 0 0 0 chr15 76618960 76618992 -9076762 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 27 0 0 chr15 76619565 76619602 -9076152 + AT_rich Low_complexity Low_complexity 1 37 0 211 289 0 0 chr15 76619890 76619942 -9075812 + CT-rich Low_complexity Low_complexity 2 53 0 183 80 0 0 chr15 76621320 76621345 -9074409 + (A)n Simple_repeat Simple_repeat 1 25 0 405 0 0 0 chr15 76622860 76622905 -9072849 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr15 76625414 76625434 -9070320 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5221 14 3 1 chr15 76627372 76628370 -9067384 - L1PA2 LINE L1 -266 5889 4890 2220 16 4 0 chr15 76628370 76628627 -9067127 + L1PA2 LINE L1 5896 6153 -2 245 361 32 44 chr15 76628775 76628933 -9066821 - MIR3 SINE MIR -49 159 4 2408 44 9 47 chr15 76629031 76629351 -9066403 + AluY SINE Alu 1 308 -3 292 273 0 0 chr15 76629525 76629591 -9066163 + (TG)n Simple_repeat Simple_repeat 2 67 0 417 264 0 0 chr15 76629878 76630026 -9065728 + (TG)n Simple_repeat Simple_repeat 2 149 0 316 278 6 6 chr15 76630062 76630235 -9065519 + (TG)n Simple_repeat Simple_repeat 2 174 0 349 252 0 14 chr15 76630266 76630409 -9065345 + (TG)n Simple_repeat Simple_repeat 2 142 0 216 274 0 0 chr15 76630782 76630844 -9064910 + (ATG)n Simple_repeat Simple_repeat 1 62 0 348 385 19 0 chr15 76630854 76631010 -9064744 - MIR SINE MIR -101 161 3 270 125 0 0 chr15 76631760 76631808 -9063946 + (TG)n Simple_repeat Simple_repeat 1 48 0 209 122 0 24 chr15 76632108 76632149 -9063605 + (TA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr15 76632149 76632193 -9063561 + (GA)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr15 76632194 76632217 -9063537 + (TA)n Simple_repeat Simple_repeat 1 23 0 1918 102 35 28 chr15 76632218 76632503 -9063251 - AluSc SINE Alu -22 287 1 1378 177 54 7 chr15 76633437 76633731 -9062023 + MER61A LTR ERV1 1 308 -35 282 316 51 8 chr15 76634355 76634472 -9061282 - MIR3 SINE MIR -48 160 39 2119 131 0 7 chr15 76634636 76634958 -9060796 - AluSg SINE Alu 0 310 1 1203 151 21 151 chr15 76635042 76635374 -9060380 + AluJo SINE Alu 1 289 -13 314 282 33 105 chr15 76636384 76636565 -9059189 + MIR SINE MIR 47 214 -48 1709 235 114 43 chr15 76637150 76637921 -9057833 - LTR1B LTR ERV1 0 826 1 471 364 119 17 chr15 76637923 76638335 -9057419 + L2 LINE L2 2511 2964 -350 265 47 47 0 chr15 76638830 76638873 -9056881 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1374 24 6 0 chr15 76638956 76639120 -9056634 + L1PA5 LINE L1 5987 6151 -3 22 0 0 0 chr15 76639120 76639142 -9056612 + AT_rich Low_complexity Low_complexity 1 22 0 437 307 73 11 chr15 76639297 76639655 -9056099 + L1ME LINE L1 5261 5640 -530 239 210 116 24 chr15 76639713 76639873 -9055881 + L1ME LINE L1 5728 5897 -224 21 0 0 0 chr15 76640293 76640314 -9055440 + AT_rich Low_complexity Low_complexity 1 21 0 548 202 51 34 chr15 76640776 76640954 -9054800 + MER53 DNA DNA 9 189 0 2024 141 92 51 chr15 76641208 76641399 -9054355 + MSTC LTR MaLR 1 183 -245 2462 82 3 0 chr15 76641399 76641705 -9054049 + AluY SINE Alu 1 307 -4 2024 141 92 51 chr15 76641705 76641924 -9053830 + MSTC LTR MaLR 183 428 0 224 386 96 15 chr15 76644026 76644298 -9051456 + L2 LINE L2 2660 2953 -361 781 144 0 0 chr15 76644840 76644958 -9050796 + FLAM_C SINE Alu 1 118 -15 35 24 0 0 chr15 76644958 76645000 -9050754 + AT_rich Low_complexity Low_complexity 1 42 0 669 267 43 30 chr15 76645520 76645811 -9049943 - L1ME LINE L1 -508 5656 5364 279 0 0 0 chr15 76645819 76645850 -9049904 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr15 76646191 76646214 -9049540 + AT_rich Low_complexity Low_complexity 1 23 0 976 290 59 58 chr15 76646475 76647414 -9048340 - L1MEd LINE L1 -4862 1257 318 2017 128 3 0 chr15 76647445 76647767 -9047987 - AluSg SINE Alu 0 323 1 378 134 0 0 chr15 76648082 76648149 -9047605 + (T)n Simple_repeat Simple_repeat 1 67 0 217 370 0 0 chr15 76648493 76648574 -9047180 + MIR SINE MIR 73 153 -109 6030 214 36 48 chr15 76648838 76650930 -9044824 - L1MB7 LINE L1 -10 6174 4122 2058 112 7 31 chr15 76650930 76651224 -9044530 - AluSx SINE Alu -22 290 4 6030 214 36 48 chr15 76651224 76651756 -9043998 - L1MB7 LINE L1 -2062 4122 3585 2239 115 3 3 chr15 76652434 76652739 -9043015 + AluSq SINE Alu 1 305 -8 580 219 120 68 chr15 76652873 76653086 -9042668 + MLT1L LTR MaLR 1 206 -299 416 297 73 75 chr15 76654009 76654527 -9041227 + ERVL LTR ERVL 883 1399 -4365 1305 227 84 9 chr15 76654640 76654961 -9040793 + MER2 DNA MER2_type 1 345 0 216 67 0 0 chr15 76655575 76655605 -9040149 + (CA)n Simple_repeat Simple_repeat 2 31 0 1536 316 48 21 chr15 76655612 76656325 -9039429 + ERVL LTR ERVL 2195 2926 -2838 461 354 48 18 chr15 76656364 76656858 -9038896 + ERVL LTR ERVL 2992 3505 -2149 340 269 124 31 chr15 76657074 76657267 -9038487 + ERVL LTR ERVL 3871 4081 -1683 775 318 54 30 chr15 76657346 76657808 -9037946 + ERVL LTR ERVL 4193 4665 -1099 1130 308 28 24 chr15 76657828 76658322 -9037432 + ERVL LTR ERVL 4851 5346 -418 10774 127 20 10 chr15 76658692 76660378 -9035376 - Tigger1 DNA MER2_type -4 2414 712 250 167 244 0 chr15 76660375 76660453 -9035301 - Tigger1 DNA MER2_type -2321 97 1 * 185 373 75 31 chr15 76661282 76661443 -9034311 - L2 LINE L2 -16 3256 3089 411 349 23 12 chr15 76662248 76662420 -9033334 + MLT1L LTR MaLR 88 261 -354 651 313 56 4 chr15 76662456 76662705 -9033049 + MLT1L LTR MaLR 346 607 -8 265 300 20 10 chr15 76663006 76663106 -9032648 + MIR3 SINE MIR 91 191 -17 251 231 99 44 chr15 76663256 76663347 -9032407 - L2 LINE L2 -56 3257 3162 337 313 63 56 chr15 76664033 76664616 -9031138 + L1MEc LINE L1 1031 1622 -4774 7372 39 0 7 chr15 76664616 76665924 -9029830 - L1PA5 LINE L1 -2 6152 4850 337 313 63 56 chr15 76665924 76666107 -9029647 + L1MEc LINE L1 1622 1802 -4594 503 271 67 86 chr15 76666195 76666568 -9029186 + L1MEc LINE L1 1984 2349 -4047 406 252 124 24 chr15 76666640 76666890 -9028864 + L1MEc LINE L1 2328 2602 -3613 15116 167 20 22 chr15 76666915 76671368 -9024386 - L1MA2 LINE L1 0 7723 3281 732 277 131 48 chr15 76671413 76671793 -9023961 + L1MEc LINE L1 2650 2997 -3218 2368 110 0 0 chr15 76671793 76672103 -9023651 + AluSx SINE Alu 1 310 -2 732 277 131 48 chr15 76672103 76672726 -9023028 + L1MEc LINE L1 2997 3736 -2479 717 271 35 99 chr15 76672723 76672922 -9022832 + L1ME3A LINE L1 5754 5964 -206 * 630 215 0 16 chr15 76672922 76673043 -9022711 + FLAM_C SINE Alu 1 119 -14 369 43 0 0 chr15 76673043 76673090 -9022664 + (CA)n Simple_repeat Simple_repeat 2 48 0 717 271 35 99 chr15 76673090 76673324 -9022430 + L1ME3A LINE L1 5962 6160 -10 25 21 0 43 chr15 76673324 76673351 -9022403 + AT_rich Low_complexity Low_complexity 1 27 -18 2169 97 0 10 chr15 76673351 76673639 -9022115 - AluSc SINE Alu -24 285 1 25 21 0 43 chr15 76673639 76673658 -9022096 + AT_rich Low_complexity Low_complexity 27 45 0 595 238 102 0 chr15 76673658 76673864 -9021890 + MER69 DNA AcHobo 2075 2301 -225 1358 208 0 7 chr15 76673889 76674163 -9021591 - AluJb SINE Alu -4 308 37 246 273 0 0 chr15 76675576 76675631 -9020123 + (CA)n Simple_repeat Simple_repeat 2 56 0 316 289 6 25 chr15 76676147 76676293 -9019461 + MIR SINE MIR 7 147 -77 250 323 116 30 chr15 76676329 76676493 -9019261 + MIR SINE MIR 69 246 -16 217 348 11 22 chr15 76676503 76676592 -9019162 - L2 LINE L2 -28 3285 3198 252 247 97 11 chr15 76676904 76676997 -9018757 - MIR SINE MIR -76 186 86 191 36 36 0 chr15 76677015 76677043 -9018711 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 0 0 0 chr15 76677405 76677433 -9018321 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr15 76677763 76677793 -9017961 + GC_rich Low_complexity Low_complexity 1 30 0 204 67 0 0 chr15 76678092 76678122 -9017632 + (A)n Simple_repeat Simple_repeat 1 30 0 25 65 0 0 chr15 76680876 76680922 -9014832 + AT_rich Low_complexity Low_complexity 1 46 0 531 201 22 58 chr15 76681251 76681390 -9014364 - MER20 DNA MER1_type 0 219 86 334 333 99 24 chr15 76681528 76681780 -9013974 + L2 LINE L2 2964 3234 -38 278 287 11 0 chr15 76683013 76683100 -9012654 - MIR SINE MIR -11 251 164 5169 170 30 14 chr15 76683198 76684169 -9011585 - L1MD2 LINE L1 -1 6358 5373 480 327 36 6 chr15 76684839 76685004 -9010750 + MIR SINE MIR 20 189 -73 526 345 116 54 chr15 76685351 76685815 -9009939 - L3 LINE CR1 -110 1467 975 195 167 0 0 chr15 76687601 76687643 -9008111 + GA-rich Low_complexity Low_complexity 1 42 0 456 273 80 73 chr15 76689597 76689872 -9005882 + L2 LINE L2 3036 3312 -1 520 332 13 9 chr15 76690022 76690248 -9005506 + MIR SINE MIR 31 262 0 195 340 50 43 chr15 76690902 76691043 -9004711 + L2 LINE L2 2714 2855 -459 2235 117 3 3 chr15 76691207 76691515 -9004239 - AluSg SINE Alu -2 308 1 27 87 0 0 chr15 76691638 76691707 -9004047 + AT_rich Low_complexity Low_complexity 1 69 0 316 266 58 35 chr15 76693212 76693354 -9002400 - MIR SINE MIR -18 244 100 1000 240 0 5 chr15 76693388 76693605 -9002149 + AluJb SINE Alu 85 300 -12 257 263 10 81 chr15 76693968 76694067 -9001687 + MIR SINE MIR 103 194 -68 1030 76 0 7 chr15 76694067 76694211 -9001543 + AluY SINE Alu 168 310 -1 242 342 31 27 chr15 76694419 76694644 -9001110 - HsTC2 DNA Tc2 -1042 856 631 228 234 16 0 chr15 76694726 76694790 -9000964 - HsTC2 DNA Tc2 -1596 302 238 2520 77 0 0 chr15 76695736 76696046 -8999708 + AluY SINE Alu 1 310 -1 1350 82 0 5 chr15 76696077 76696261 -8999493 + L1PA7 LINE L1 5971 6153 -1 206 319 53 21 chr15 76697458 76697552 -8998202 - L2 LINE L2 -15 3257 3161 598 185 0 60 chr15 76698173 76698278 -8997476 + L1MB1 LINE L1 6027 6123 -45 1936 122 7 21 chr15 76698278 76698564 -8997190 + AluSx SINE Alu 1 282 -30 270 0 56 0 chr15 76698564 76698600 -8997154 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 598 185 0 60 chr15 76698600 76698644 -8997110 + L1MB1 LINE L1 6123 6168 0 2940 195 40 32 chr15 76698719 76699401 -8996353 - MER76 LTR ERV 0 688 2 252 236 18 0 chr15 76699417 76699472 -8996282 - MIR SINE MIR -195 67 12 240 325 106 12 chr15 76699669 76699829 -8995925 - L2 LINE L2 -220 3052 2878 320 218 11 0 chr15 76699829 76699916 -8995838 + (TG)n Simple_repeat Simple_repeat 1 88 0 1100 193 124 40 chr15 76700492 76700814 -8994940 + MLT1C LTR MaLR 3 351 -116 2019 89 0 0 chr15 76700849 76701139 -8994615 - AluSg SINE Alu 0 322 33 1450 164 6 102 chr15 76701144 76701307 -8994447 - AluJo SINE Alu -9 293 175 2158 119 0 3 chr15 76701307 76701601 -8994153 - AluSx SINE Alu -15 297 5 1450 164 6 102 chr15 76701601 76701761 -8993993 - AluJo SINE Alu -127 175 1 262 231 0 0 chr15 76701777 76701829 -8993925 + MLT1C LTR MaLR 416 467 0 424 189 0 18 chr15 76702251 76702362 -8993392 - L1ME4a LINE L1 -5 6116 6008 346 305 23 46 chr15 76702490 76702664 -8993090 - L1ME4a LINE L1 -304 5817 5648 3089 239 23 18 chr15 76703931 76705089 -8990665 - L1ME1 LINE L1 -5 6161 5002 300 146 0 0 chr15 76705089 76705137 -8990617 - AluSg SINE Alu -252 48 1 458 211 105 38 chr15 76705197 76705334 -8990420 - L1ME1 LINE L1 -1721 4425 4268 1348 160 120 69 chr15 76705334 76705710 -8990044 + MSTD LTR MaLR 2 396 0 458 211 105 38 chr15 76705710 76705781 -8989973 - L1ME1 LINE L1 -1878 4268 4203 213 222 37 0 chr15 76706443 76706497 -8989257 + (CTCA)n Simple_repeat Simple_repeat 3 58 0 251 309 36 27 chr15 76706675 76706785 -8988969 - L2 LINE L2 -228 3044 2934 349 252 41 24 chr15 76709742 76709865 -8985889 + L1ME4a LINE L1 5152 5276 -870 573 246 119 45 chr15 76709873 76710449 -8985305 + L1ME4a LINE L1 5290 5940 -230 225 306 92 20 chr15 76711190 76711288 -8984466 - MIR SINE MIR -140 122 18 226 341 188 7 chr15 76711462 76711600 -8984154 + MER5A DNA MER1_type 27 189 0 311 288 131 81 chr15 76711694 76712128 -8983626 + L1 LINE L1 2850 3305 -2841 225 213 40 40 chr15 76712777 76712852 -8982902 + L1ME4a LINE L1 5945 6019 -102 485 238 89 48 chr15 76713287 76713455 -8982299 + MER5B DNA MER1_type 1 175 -3 1540 163 54 62 chr15 76713824 76714473 -8981281 - pTR5 LTR ERV1 -1042 1396 753 410 287 43 32 chr15 76714474 76714662 -8981092 - MIR SINE MIR -41 221 32 1643 167 0 40 chr15 76715165 76715465 -8980289 - AluJb SINE Alu -24 288 1 2081 116 0 17 chr15 76715471 76715764 -8979990 - AluSc SINE Alu -8 301 14 1482 144 58 4 chr15 76715764 76716042 -8979712 - L1MC1 LINE L1 -346 5987 5695 229 278 160 0 chr15 76716037 76716181 -8979573 - L1MA9 LINE L1 -211 6101 5935 * 231 154 0 0 chr15 76716182 76716221 -8979533 + L1M4 LINE L1 4732 4770 -1376 539 235 7 13 chr15 76716267 76716420 -8979334 + L1MA9 LINE L1 6130 6281 -31 9207 216 57 72 chr15 76716426 76717497 -8978257 - L1MCa LINE L1 -622 5991 4906 1287 243 3 20 chr15 76717497 76717801 -8977953 - AluJo SINE Alu -8 304 6 9207 216 57 72 chr15 76717801 76720616 -8975138 - L1MCa LINE L1 -1707 4906 1934 222 37 0 0 chr15 76720616 76720643 -8975111 + (CA)n Simple_repeat Simple_repeat 2 28 0 9207 216 57 72 chr15 76720643 76722531 -8973223 - L1MCa LINE L1 -4679 1934 20 3059 127 82 6 chr15 76723782 76724271 -8971483 - MER1A DNA MER1_type -1 526 1 572 263 53 0 chr15 76724799 76725027 -8970727 - MER114 LTR ERV -76 572 333 228 212 30 45 chr15 76725311 76725377 -8970377 + MIR SINE MIR 117 181 -81 255 202 0 43 chr15 76725378 76725472 -8970282 - L1MC4 LINE L1 -1339 6703 6614 387 220 0 0 chr15 76725472 76725563 -8970191 + (TA)n Simple_repeat Simple_repeat 2 92 0 3572 12 0 0 chr15 76725602 76726024 -8969730 - L1PA4 LINE L1 -384 5771 5350 3143 32 8 0 chr15 76726024 76726397 -8969357 + L1PA4 LINE L1 5766 6143 -12 256 241 24 0 chr15 76726397 76726480 -8969274 + L1MC4 LINE L1 6617 6701 -1341 226 360 36 0 chr15 76726510 76726621 -8969133 - L2 LINE L2 -240 3032 2918 213 362 118 14 chr15 76726795 76727016 -8968738 + L3b LINE CR1 1319 1562 -21 183 42 0 0 chr15 76727364 76727388 -8968366 + (TG)n Simple_repeat Simple_repeat 2 25 0 234 321 19 0 chr15 76728605 76728711 -8967043 - L1ME3A LINE L1 -13 6157 6050 2291 102 0 0 chr15 76729733 76730028 -8965726 + AluSg SINE Alu 1 295 -15 1944 145 10 19 chr15 76730039 76730349 -8965405 + AluSx SINE Alu 1 307 -5 345 290 133 40 chr15 76730660 76731037 -8964717 - L1ME LINE L1 -393 5728 5315 484 308 84 8 chr15 76731632 76731869 -8963885 + L1ME4a LINE L1 5628 5882 -239 1388 178 0 22 chr15 76731886 76732116 -8963638 + AluJo SINE Alu 1 225 -87 213 370 100 12 chr15 76733886 76734135 -8961619 - L2 LINE L2 -491 2823 2553 2228 109 7 0 chr15 76736219 76736521 -8959233 - AluSc SINE Alu -1 308 5 1712 101 5 0 chr15 76736844 76737063 -8958691 + AluSc SINE Alu 1 220 -89 191 35 0 35 chr15 76737063 76737092 -8958662 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 2221 111 7 3 chr15 76737445 76737751 -8958003 - AluSg SINE Alu -3 307 1 302 297 7 35 chr15 76738120 76738265 -8957489 + MER45A DNA AcHobo 38 178 0 500 0 17 0 chr15 76738609 76738669 -8957085 + (CA)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr15 76739779 76739806 -8955948 + AT_rich Low_complexity Low_complexity 1 27 0 357 320 183 10 chr15 76739837 76740034 -8955720 + MIR SINE MIR 30 260 -2 191 313 70 0 chr15 76740091 76740206 -8955548 - L3 LINE CR1 -774 803 681 1735 156 6 32 chr15 76740933 76741272 -8954482 - MLT1A1 LTR MaLR -3 362 33 544 227 188 7 chr15 76742101 76742255 -8953499 + MER5A DNA MER1_type 8 189 0 199 271 14 86 chr15 76743293 76743330 -8952424 + L2 LINE L2 3205 3236 -36 1706 194 31 3 chr15 76743330 76743685 -8952069 - MLT1A1 LTR MaLR 0 365 1 199 271 14 86 chr15 76743685 76743717 -8952037 + L2 LINE L2 3236 3269 -3 290 315 49 20 chr15 76745321 76745524 -8950230 + Charlie7 DNA MER1_type 1 209 -2403 1707 189 0 10 chr15 76745631 76745922 -8949832 - AluJb SINE Alu -18 294 7 26 30 0 0 chr15 76745941 76745974 -8949780 + AT_rich Low_complexity Low_complexity 1 33 0 5065 170 23 10 chr15 76746119 76747662 -8948092 - L1MA6 LINE L1 -6 6294 4728 378 241 113 36 chr15 76747742 76748167 -8947587 + Charlie7 DNA MER1_type 1906 2410 -202 22 0 0 0 chr15 76748511 76748533 -8947221 + AT_rich Low_complexity Low_complexity 1 22 0 442 292 25 44 chr15 76750919 76751126 -8944628 + MIR SINE MIR 30 233 -29 1219 205 69 85 chr15 76751328 76751703 -8944051 + MLT1A2 LTR MaLR 1 369 -5 950 276 4 8 chr15 76752022 76752261 -8943493 + L1MD1 LINE L1 122 359 -6285 2129 223 46 32 chr15 76752262 76752372 -8943382 + L1MD1 LINE L1 934 1041 -5501 2153 87 0 27 chr15 76752372 76752672 -8943082 + AluSx SINE Alu 1 292 -20 2129 223 46 32 chr15 76752672 76753274 -8942480 + L1MD1 LINE L1 1041 1656 -4886 2181 264 47 14 chr15 76753280 76754001 -8941753 + L1MB8 LINE L1 4023 4767 -1379 * 2620 194 11 11 chr15 76753998 76754561 -8941193 + L1MB8 LINE L1 5259 5821 -363 926 211 13 113 chr15 76754567 76754684 -8941070 + MLT2C1 LTR ERVL 112 239 -158 979 178 0 11 chr15 76754684 76754875 -8940879 + L1MB8 LINE L1 5989 6177 -1 926 211 13 113 chr15 76754875 76755075 -8940679 + MLT2C1 LTR ERVL 239 397 0 1621 222 31 12 chr15 76755075 76755489 -8940265 - L1MDa LINE L1 -4487 2053 1632 1391 190 95 3 chr15 76755496 76755822 -8939932 - L1MB7 LINE L1 -9 6175 5820 667 157 33 8 chr15 76755823 76755944 -8939810 - MLT2C1 LTR ERVL -273 124 1 7524 211 57 30 chr15 76755953 76757608 -8938146 - ERVL LTR ERVL -17 5747 4048 1576 226 63 9 chr15 76757715 76758148 -8937606 - ERVL LTR ERVL -1470 4015 3585 710 143 0 0 chr15 76758135 76758240 -8937514 - LTR12 LTR ERV1 -132 582 478 * 359 222 0 0 chr15 76758251 76758332 -8937422 - LTR30 LTR ERV1 -98 624 544 1515 100 3 166 chr15 76758332 76758663 -8937091 - LTR12 LTR ERV1 -437 277 1 7335 205 22 24 chr15 76758663 76760136 -8935618 - ERVL LTR ERVL -2164 3600 2132 692 201 41 67 chr15 76760136 76760330 -8935424 - MLT2C1 LTR ERVL -87 310 122 3400 255 50 7 chr15 76760333 76761542 -8934212 + L1MD1 LINE L1 3211 4471 -2173 893 145 0 35 chr15 76761543 76761715 -8934039 - L1P LINE L1 -1366 4780 4615 1426 91 34 0 chr15 76761715 76761922 -8933832 + L1PA13 LINE L1 5949 6163 0 748 283 56 8 chr15 76761924 76762269 -8933485 + L1MD1 LINE L1 4466 4848 -1796 1280 149 67 51 chr15 76762296 76762551 -8933203 + Tigger2a DNA MER2_type 1 259 -175 1028 167 36 0 chr15 76762682 76762850 -8932904 - Tigger2 DNA MER2_type 0 2718 2545 4395 224 45 10 chr15 76762861 76763685 -8932069 + L1MD1 LINE L1 4951 5745 -995 240 35 0 0 chr15 76763685 76763714 -8932040 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4395 224 45 10 chr15 76763714 76764494 -8931260 + L1MD1 LINE L1 5745 6621 -119 2439 99 50 16 chr15 76764494 76764857 -8930897 - THE1C LTR MaLR 0 375 1 4395 224 45 10 chr15 76764857 76764980 -8930774 + L1MD1 LINE L1 6621 6738 -2 21 0 0 0 chr15 76765388 76765409 -8930345 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 76765445 76765465 -8930289 + (T)n Simple_repeat Simple_repeat 1 20 0 415 258 54 48 chr15 76765501 76765668 -8930086 - L1ME2 LINE L1 -3 6161 5994 737 220 124 31 chr15 76765851 76766110 -8929644 - L1ME2 LINE L1 -243 5921 5639 726 266 76 24 chr15 76766109 76766568 -8929186 + L1ME1 LINE L1 1350 1832 -4552 * 270 0 0 0 chr15 76766642 76766672 -8929082 + (GA)n Simple_repeat Simple_repeat 2 31 0 2073 159 43 36 chr15 76766677 76767227 -8928527 + MLT2A2 LTR ERVL 1 554 0 1674 277 93 31 chr15 76767433 76768703 -8927051 + L1ME1 LINE L1 1990 3337 -3045 1299 236 71 49 chr15 76768703 76769195 -8926559 + MLT1D LTR MaLR 3 505 0 1674 277 93 31 chr15 76769195 76769423 -8926331 + L1ME1 LINE L1 3337 3549 -2833 284 239 0 0 chr15 76769443 76769514 -8926240 + L1MB8 LINE L1 6092 6162 -16 2325 242 49 58 chr15 76769526 76771015 -8924739 + L1ME1 LINE L1 4776 6387 -15 241 67 22 22 chr15 76771231 76771276 -8924478 + (TTATA)n Simple_repeat Simple_repeat 4 48 0 390 252 122 22 chr15 76771718 76771857 -8923897 - MER104 DNA Tc2 -1 179 27 348 256 39 23 chr15 76772503 76772632 -8923122 + CT-rich Low_complexity Low_complexity 3 133 0 23 68 0 0 chr15 76772654 76772698 -8923056 + AT_rich Low_complexity Low_complexity 1 44 0 646 215 0 21 chr15 76774112 76774256 -8921498 - FRAM SINE Alu 0 176 36 24 0 0 0 chr15 76774283 76774307 -8921447 + AT_rich Low_complexity Low_complexity 1 24 0 200 130 22 0 chr15 76774373 76774419 -8921335 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1423 191 3 46 chr15 76774457 76774760 -8920994 + AluJb SINE Alu 10 299 -13 222 203 14 58 chr15 76775740 76775809 -8919945 + GA-rich Low_complexity Low_complexity 2 67 0 220 100 60 0 chr15 76776156 76776206 -8919548 + T-rich Low_complexity Low_complexity 4 56 0 256 303 67 0 chr15 76776699 76776818 -8918936 - L1ME LINE L1 -442 5679 5553 2506 74 0 0 chr15 76776818 76777127 -8918627 + AluY SINE Alu 1 309 -2 277 325 0 25 chr15 76778150 76778230 -8917524 - L2 LINE L2 -5 3267 3190 2157 96 0 4 chr15 76778297 76778601 -8917153 - AluSg SINE Alu 0 303 1 2187 133 14 8 chr15 76778747 76779100 -8916654 + THE1A LTR MaLR 1 355 0 436 328 33 22 chr15 76779600 76779783 -8915971 + MIR SINE MIR 3 187 -75 237 276 17 0 chr15 76780593 76780651 -8915103 + L2 LINE L2 3214 3272 0 188 159 0 23 chr15 76780942 76780986 -8914768 + (TA)n Simple_repeat Simple_repeat 2 44 0 688 255 135 10 chr15 76781409 76781617 -8914137 - MLT1G1 LTR MaLR -261 334 101 760 224 0 5 chr15 76781618 76781830 -8913924 + AluJb SINE Alu 7 312 0 348 274 66 0 chr15 76781830 76781936 -8913818 - MLT1G1 LTR MaLR -482 113 1 562 250 0 15 chr15 76782463 76782599 -8913155 - LTR67 LTR ERVL 0 557 424 1999 176 33 33 chr15 76783029 76783587 -8912167 - MLT2A2 LTR ERVL 0 554 1 709 293 40 24 chr15 76783648 76783901 -8911853 - MLT1I LTR MaLR -3 406 150 4206 209 60 42 chr15 76784654 76785419 -8910335 - L1MD2 LINE L1 0 6359 5560 2075 142 0 3 chr15 76785419 76785730 -8910024 + AluSg SINE Alu 1 310 0 4206 209 60 42 chr15 76785730 76786286 -8909468 - L1MD2 LINE L1 -799 5560 5015 234 180 0 20 chr15 76786450 76786500 -8909254 + CT-rich Low_complexity Low_complexity 2 50 0 343 300 53 53 chr15 76786500 76786727 -8909027 - MIR SINE MIR -8 254 28 274 226 5 59 chr15 76786788 76786974 -8908780 + (TTA)n Simple_repeat Simple_repeat 1 176 0 2190 164 72 0 chr15 76789888 76790277 -8905477 + L1MC3 LINE L1 6444 6860 -925 2744 161 35 4 chr15 76790319 76790836 -8904918 + L1MC3 LINE L1 7251 7783 -2 186 346 26 0 chr15 76790836 76790914 -8904840 + L2 LINE L2 2239 2318 -996 12884 143 54 11 chr15 76791016 76793236 -8902518 + Tigger1 DNA MER2_type 101 2415 -3 266 353 52 22 chr15 76793781 76793917 -8901837 - L2 LINE L2 -5 3308 3169 427 144 0 17 chr15 76794931 76795049 -8900705 + (TA)n Simple_repeat Simple_repeat 2 117 0 21 36 0 0 chr15 76795189 76795217 -8900537 + AT_rich Low_complexity Low_complexity 1 28 0 213 348 33 33 chr15 76796712 76796804 -8898950 - MIR3 SINE MIR -49 159 68 227 241 37 0 chr15 76796856 76796910 -8898844 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 2573 146 5 5 chr15 76796924 76797362 -8898392 + L1MB3 LINE L1 5737 6174 -9 263 103 51 0 chr15 76797802 76797841 -8897913 - L1PA7 LINE L1 -165 5989 5949 433 38 0 0 chr15 76797843 76797896 -8897858 + L1PA5 LINE L1 6098 6150 -4 23 33 0 0 chr15 76799405 76799435 -8896319 + AT_rich Low_complexity Low_complexity 1 30 0 228 246 0 0 chr15 76800957 76801026 -8894728 + (TA)n Simple_repeat Simple_repeat 1 69 0 1547 191 4 0 chr15 76801478 76801750 -8894004 + AluJb SINE Alu 26 298 -14 212 298 167 9 chr15 76801773 76801887 -8893867 + MIR SINE MIR 118 249 -13 416 236 6 109 chr15 76802580 76802745 -8893009 - L2 LINE L2 -1 3312 3165 582 349 159 27 chr15 76803013 76804041 -8891713 - L2 LINE L2 -419 2895 1732 318 335 103 36 chr15 76804033 76804391 -8891363 + L2 LINE L2 2177 2558 -756 * 258 289 142 41 chr15 76804400 76804597 -8891157 + L2 LINE L2 2480 2696 -618 536 266 69 69 chr15 76804600 76804874 -8890880 + L2 LINE L2 3040 3313 0 23 0 0 0 chr15 76805465 76805488 -8890266 + AT_rich Low_complexity Low_complexity 1 23 0 631 89 0 41 chr15 76806149 76806272 -8889482 + (TCC)n Simple_repeat Simple_repeat 3 120 0 258 269 15 0 chr15 76806272 76806339 -8889415 + CT-rich Low_complexity Low_complexity 1 68 0 732 206 0 0 chr15 76806692 76806823 -8888931 - FLAM_A SINE Alu 0 133 3 799 269 76 100 chr15 76807335 76808035 -8887719 - MER21B LTR ERV1 -170 693 11 635 232 140 69 chr15 76808052 76808444 -8887310 - L1MC4 LINE L1 -142 7900 7481 777 177 0 8 chr15 76808496 76808626 -8887128 - FLAM_C SINE Alu -3 130 2 553 192 8 0 chr15 76808626 76808753 -8887001 - L1MC4 LINE L1 -624 7247 7058 2068 143 56 8 chr15 76809629 76809987 -8885767 + THE1C LTR MaLR 1 375 0 1411 204 89 4 chr15 76810379 76810648 -8885106 - MLT2B1 LTR ERVL -217 303 12 2182 166 36 32 chr15 76810648 76811196 -8884558 + MLT2A2 LTR ERVL 1 554 0 318 320 39 31 chr15 76811305 76811433 -8884321 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr15 76811480 76811502 -8884252 + AT_rich Low_complexity Low_complexity 1 22 0 244 120 40 0 chr15 76812461 76812511 -8883243 + (TG)n Simple_repeat Simple_repeat 2 53 0 489 219 21 0 chr15 76812917 76813013 -8882741 + MLT1A2 LTR MaLR 4 101 -273 3844 99 10 13 chr15 76813022 76813712 -8882042 + L1PB1 LINE L1 5103 5791 -360 293 214 22 45 chr15 76813725 76813814 -8881940 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 2443 85 23 6 chr15 76813815 76814169 -8881585 + L1PB1 LINE L1 5791 6150 -1 1258 190 8 41 chr15 76814186 76814454 -8881300 + MLT1A2 LTR MaLR 116 374 0 276 53 0 0 chr15 76814543 76814581 -8881173 + (T)n Simple_repeat Simple_repeat 1 38 0 2896 254 69 110 chr15 76814676 76816548 -8879206 + L2 LINE L2 382 2176 -1138 285 146 0 0 chr15 76816636 76816677 -8879077 + MER94 DNA DNA 18 58 -76 111 23 0 0 chr15 76816991 76817123 -8878631 + AT_rich Low_complexity Low_complexity 1 132 0 275 306 0 0 chr15 76817304 76817376 -8878378 + MLT1L LTR MaLR 443 514 -101 809 218 96 133 chr15 76817609 76818045 -8877709 - MLT1A1 LTR MaLR 0 365 9 2015 174 18 18 chr15 76819099 76819489 -8876265 + MLT1B LTR MaLR 1 390 0 2948 186 20 9 chr15 76819652 76820159 -8875595 + MLT2B3 LTR ERVL 1 516 -38 369 69 14 28 chr15 76820159 76820231 -8875523 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2948 186 20 9 chr15 76820231 76820271 -8875483 + MLT2B3 LTR ERVL 516 554 0 1963 199 36 17 chr15 76820476 76820897 -8874857 + LTR3 LTR ERVK 1 429 -3 270 143 0 0 chr15 76820906 76820948 -8874806 + HERVK3 LTR ERVK 1 42 -7201 799 255 20 15 chr15 76822473 76822669 -8873085 + LTR40a LTR ERVL 3 199 -320 24235 130 21 2 chr15 76822673 76827334 -8868420 + L1PA8A LINE L1 1289 6036 -95 639 120 0 0 chr15 76827436 76827528 -8868226 + L1PA8 LINE L1 6064 6155 -17 2103 125 0 3 chr15 76827558 76827862 -8867892 + AluSg SINE Alu 1 303 -7 612 275 97 54 chr15 76827864 76828122 -8867632 + LTR40a LTR ERVL 193 461 -58 232 255 65 45 chr15 76828745 76828945 -8866809 - L1M4 LINE L1 -3005 3141 2938 434 302 74 40 chr15 76829062 76829360 -8866394 - L1M4 LINE L1 -3531 2615 2308 24 0 0 0 chr15 76829399 76829423 -8866331 + AT_rich Low_complexity Low_complexity 1 24 0 333 241 35 11 chr15 76829490 76829577 -8866177 + LTR33 LTR ERVL 433 521 0 1748 222 33 33 chr15 76832559 76833009 -8862745 + L1M4 LINE L1 497 946 -6543 698 223 88 9 chr15 76833047 76833151 -8862603 + L1M4 LINE L1 2923 3017 -4548 2503 71 0 3 chr15 76833151 76833461 -8862293 + AluY SINE Alu 2 310 -1 698 223 88 9 chr15 76833461 76833571 -8862183 + L1M4 LINE L1 3017 3154 -4411 1299 51 0 0 chr15 76833578 76833734 -8862020 + L1PA10 LINE L1 6002 6157 -11 1854 223 28 20 chr15 76834393 76835138 -8860616 + L1M4 LINE L1 3343 4098 -3467 4148 196 28 13 chr15 76835180 76836773 -8858981 + L1PA16 LINE L1 4249 5999 -167 304 157 326 0 chr15 76836875 76836964 -8858790 + L1PA16 LINE L1 6036 6153 -13 3161 209 33 50 chr15 76836966 76838541 -8857213 + L1MC1 LINE L1 4353 5901 -432 31 44 0 0 chr15 76839342 76839387 -8856367 + AT_rich Low_complexity Low_complexity 1 45 0 523 213 73 29 chr15 76839404 76839540 -8856214 - MLT1I LTR MaLR -40 369 228 364 305 24 51 chr15 76839633 76839781 -8855973 + L1MEc LINE L1 1512 1651 -4745 1410 233 0 14 chr15 76839781 76840148 -8855606 + AluJo SINE Alu 1 363 0 364 305 24 51 chr15 76840148 76840293 -8855461 + L1MEc LINE L1 1651 1798 -4598 320 222 0 0 chr15 76840308 76840380 -8855374 + L1M4 LINE L1 5695 5766 -1799 2046 258 22 15 chr15 76840424 76841098 -8854656 + L1M4 LINE L1 5916 6594 -971 * 4362 251 82 37 chr15 76841082 76841496 -8854258 - L1M4 LINE L1 -5060 1795 1401 387 73 0 0 chr15 76841496 76841551 -8854203 + (TG)n Simple_repeat Simple_repeat 2 56 0 4362 251 82 37 chr15 76841551 76842847 -8852907 - L1M4 LINE L1 -5454 1401 11 21 36 0 0 chr15 76843346 76843374 -8852380 + AT_rich Low_complexity Low_complexity 1 28 0 1988 89 85 4 chr15 76844107 76844388 -8851366 + AluY SINE Alu 1 304 -7 427 341 26 4 chr15 76844494 76844720 -8851034 - L1ME LINE L1 -319 5802 5572 447 19 0 0 chr15 76845754 76845806 -8849948 + (TG)n Simple_repeat Simple_repeat 1 52 0 284 277 110 52 chr15 76846253 76846408 -8849346 - MIR3 SINE MIR -5 203 40 1237 207 74 28 chr15 76846599 76846922 -8848832 - MER44D DNA MER2_type -1 608 1 1088 225 149 63 chr15 76847360 76847823 -8847931 - MLT1D LTR MaLR -2 503 1 206 273 198 94 chr15 76847946 76848074 -8847680 - L2 LINE L2 -1073 2241 2128 1377 186 80 4 chr15 76848074 76848228 -8847526 - AluJo SINE Alu -14 298 157 333 0 0 0 chr15 76848228 76848265 -8847489 + (TG)n Simple_repeat Simple_repeat 2 38 0 1377 186 80 4 chr15 76848265 76848384 -8847370 - AluJo SINE Alu -155 157 4 206 273 198 94 chr15 76848384 76848560 -8847194 - L2 LINE L2 -1186 2128 1972 2685 98 5 13 chr15 76848560 76848938 -8846816 + THE1C LTR MaLR 1 375 0 206 273 198 94 chr15 76848938 76849027 -8846727 - L2 LINE L2 -1342 1972 1806 2337 86 0 3 chr15 76849129 76849430 -8846324 + AluY SINE Alu 1 300 -11 509 111 8 42 chr15 76849481 76849584 -8846170 + L1M1 LINE L1 5593 5692 -511 287 182 78 0 chr15 76849587 76849664 -8846090 + L1M1 LINE L1 5773 5855 -445 1372 273 56 57 chr15 76849833 76850766 -8844988 + MER45C DNA AcHobo 1 937 -16 479 320 198 7 chr15 76850782 76851085 -8844669 - L2 LINE L2 -2348 966 606 594 198 66 53 chr15 76851257 76851333 -8844421 + L1ME1 LINE L1 5164 5238 -1121 2038 128 133 16 chr15 76851333 76851716 -8844038 - MSTA LTR MaLR 0 428 1 594 198 66 53 chr15 76851716 76852019 -8843735 + L1ME1 LINE L1 5238 5605 -754 2044 142 43 23 chr15 76852024 76852201 -8843553 + THE1B-int LTR MaLR 1249 1421 -230 1845 135 82 12 chr15 76852201 76852541 -8843213 + THE1B LTR MaLR 1 364 0 2044 142 43 23 chr15 76852541 76852758 -8842996 + THE1B-int LTR MaLR 1421 1651 0 2301 188 26 0 chr15 76852760 76853175 -8842579 + MSTA LTR MaLR 3 428 0 1249 234 81 51 chr15 76853184 76853487 -8842267 + L1ME1 LINE L1 5615 5942 -224 1629 168 50 80 chr15 76853487 76853885 -8841869 + MLT1B LTR MaLR 4 389 -1 1249 234 81 51 chr15 76853885 76854111 -8841643 + L1ME1 LINE L1 5942 6160 -6 426 120 0 0 chr15 76856120 76856195 -8839559 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 695 238 157 47 chr15 76857898 76858197 -8837557 + MER46C DNA MER2_type 2 333 -5 509 253 158 19 chr15 76858832 76858990 -8836764 + MER5A DNA MER1_type 4 183 -6 219 212 129 24 chr15 76859869 76859954 -8835800 - MIR SINE MIR -69 139 46 26 30 0 0 chr15 76860199 76860232 -8835522 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr15 76860472 76860494 -8835260 + AT_rich Low_complexity Low_complexity 1 22 0 613 288 97 9 chr15 76860750 76861090 -8834664 - MLT1I LTR MaLR -3 406 37 210 71 0 0 chr15 76862704 76862732 -8833022 + (GGGAGA)n Simple_repeat Simple_repeat 4 31 0 287 270 62 115 chr15 76863558 76863784 -8831970 - L2 LINE L2 0 3313 3100 236 231 19 0 chr15 76865023 76865075 -8830679 + GA-rich Low_complexity Low_complexity 3 55 0 2189 70 14 14 chr15 76866526 76866811 -8828943 - AluSx SINE Alu -17 295 11 925 114 8 8 chr15 76868192 76868323 -8827431 + AluSq/x SINE Alu 1 131 -182 420 20 0 0 chr15 76868338 76868387 -8827367 + (CA)n Simple_repeat Simple_repeat 2 50 0 420 111 0 0 chr15 76870656 76870719 -8825035 + (TG)n Simple_repeat Simple_repeat 1 63 0 2324 103 3 0 chr15 76871045 76871346 -8824408 + AluSq SINE Alu 1 302 -11 344 304 100 75 chr15 76871838 76872078 -8823676 - L2 LINE L2 -5 3267 3022 414 365 62 21 chr15 76873209 76873497 -8822257 - L3 LINE CR1 -23 1554 1255 431 266 112 70 chr15 76873513 76873825 -8821929 - L2 LINE L2 -1 3312 2988 235 351 54 49 chr15 76874085 76874270 -8821484 - L3 LINE CR1 -349 1228 1043 539 299 76 35 chr15 76875951 76876111 -8819643 - L2 LINE L2 -4 3309 3130 2110 127 0 3 chr15 76876111 76876418 -8819336 + AluSx SINE Alu 1 306 -6 539 299 76 35 chr15 76876418 76876545 -8819209 - L2 LINE L2 -183 3130 3010 21 71 0 0 chr15 76877837 76877879 -8817875 + AT_rich Low_complexity Low_complexity 1 42 0 395 359 7 0 chr15 76877935 76878077 -8817677 - MIR3 SINE MIR -1 207 65 810 190 55 161 chr15 76878249 76878560 -8817194 + MLT1A2 LTR MaLR 1 278 -112 426 211 32 0 chr15 76878635 76878730 -8817024 + MLT1A2 LTR MaLR 273 370 -4 308 276 43 9 chr15 76878923 76879039 -8816715 - L1ME LINE L1 -409 5712 5593 2197 140 0 0 chr15 76879381 76879681 -8816073 - AluSx SINE Alu -12 300 1 22 35 0 0 chr15 76879704 76879733 -8816021 + AT_rich Low_complexity Low_complexity 1 29 0 225 196 0 0 chr15 76879804 76879850 -8815904 + T-rich Low_complexity Low_complexity 1 46 0 2150 96 7 0 chr15 76882454 76882735 -8813019 + AluY SINE Alu 1 283 -28 294 179 0 0 chr15 76882735 76882791 -8812963 + (TA)n Simple_repeat Simple_repeat 1 56 0 351 225 12 52 chr15 76882794 76882922 -8812832 - L1MC4 LINE L1 -1339 6983 1959 596 257 51 23 chr15 76883340 76883515 -8812239 - MIR SINE MIR -1 261 82 294 326 71 35 chr15 76883740 76883789 -8811965 - MIR SINE MIR -115 147 101 2237 121 0 6 chr15 76883789 76884103 -8811651 + AluSx SINE Alu 1 312 0 294 326 71 35 chr15 76884103 76884194 -8811560 - MIR SINE MIR -161 101 2 2021 134 26 10 chr15 76884518 76884823 -8810931 + AluSx SINE Alu 1 310 -2 650 151 48 6 chr15 76884833 76884999 -8810755 + GA-rich Low_complexity Low_complexity 2 174 0 2126 74 42 3 chr15 76885406 76885689 -8810065 + AluSx SINE Alu 2 295 -17 26 30 0 0 chr15 76886405 76886438 -8809316 + AT_rich Low_complexity Low_complexity 1 33 0 290 235 0 12 chr15 76887098 76887183 -8808571 - L1MC4 LINE L1 -522 7520 7437 238 250 174 11 chr15 76888115 76888207 -8807547 + MIR SINE MIR 31 137 -71 1087 285 91 11 chr15 76888380 76888818 -8806936 + L2 LINE L2 2171 2643 -671 387 262 193 11 chr15 76890375 76890650 -8805104 - LTR50 LTR ERVL 0 795 471 634 272 172 4 chr15 76890703 76890935 -8804819 - LTR50 LTR ERVL -522 273 3 1000 264 159 12 chr15 76892211 76892632 -8803122 + L2 LINE L2 2350 2832 -482 186 43 0 0 chr15 76892636 76892659 -8803095 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 473 172 0 10 chr15 76892729 76892828 -8802926 + CT-rich Low_complexity Low_complexity 4 101 0 641 286 38 38 chr15 76892887 76893153 -8802601 + L2 LINE L2 3035 3300 -13 1827 266 83 20 chr15 76893696 76894576 -8801178 + L1ME3A LINE L1 5134 6065 -105 1761 62 108 0 chr15 76897780 76898021 -8797733 + L1PA8 LINE L1 5893 6159 -13 212 216 0 62 chr15 76898159 76898256 -8797498 + A-rich Low_complexity Low_complexity 2 92 0 193 345 25 84 chr15 76898257 76898613 -8797141 - L2 LINE L2 -27 3245 2911 693 191 139 6 chr15 76899424 76899597 -8796157 - MLT1B LTR MaLR -68 322 127 1285 102 9 153 chr15 76899600 76900008 -8795746 + LTR12 LTR ERV1 1 2032 -406 354 222 11 0 chr15 76900009 76900099 -8795655 + LTR30 LTR ERV1 553 643 -79 722 90 0 0 chr15 76900102 76900202 -8795552 + LTR12 LTR ERV1 483 582 -132 327 168 284 0 chr15 76900203 76900298 -8795456 - MLT1B LTR MaLR -265 125 4 198 188 104 0 chr15 76901200 76901248 -8794506 + MIR SINE MIR 129 181 -81 290 269 45 0 chr15 76901302 76901369 -8794385 + polypyrimidine Low_complexity Low_complexity 2 71 0 28 61 0 0 chr15 76901448 76901497 -8794257 + AT_rich Low_complexity Low_complexity 1 49 0 193 263 70 0 chr15 76901873 76901930 -8793824 - MIR SINE MIR -3 259 199 22 0 0 0 chr15 76902475 76902497 -8793257 + AT_rich Low_complexity Low_complexity 1 22 0 237 284 0 0 chr15 76904633 76904700 -8791054 + GA-rich Low_complexity Low_complexity 1 67 0 553 300 159 18 chr15 76906582 76906809 -8788945 - MIR SINE MIR 0 262 4 263 356 52 0 chr15 76907033 76907148 -8788606 + MIR SINE MIR 55 175 -87 47 19 0 0 chr15 76907309 76907363 -8788391 + AT_rich Low_complexity Low_complexity 1 54 0 14124 135 30 24 chr15 76911528 76913510 -8782244 - Tigger1 DNA MER2_type 0 2418 418 2153 86 13 16 chr15 76913510 76913814 -8781940 - AluSq SINE Alu -10 303 1 14124 135 30 24 chr15 76913814 76914235 -8781519 - Tigger1 DNA MER2_type -2000 418 1 320 119 24 48 chr15 76914515 76914599 -8781155 + CT-rich Low_complexity Low_complexity 4 85 0 207 0 0 0 chr15 76914599 76914622 -8781132 + (TC)n Simple_repeat Simple_repeat 1 23 0 2261 95 0 0 chr15 76914622 76914916 -8780838 - AluSc SINE Alu -15 294 1 266 213 0 0 chr15 76915492 76915539 -8780215 + MLT1B LTR MaLR 1 47 -343 245 185 0 38 chr15 76915554 76915611 -8780143 + MLT1B LTR MaLR 321 390 0 241 303 62 49 chr15 76915620 76915782 -8779972 - MIR SINE MIR -52 210 47 189 346 98 43 chr15 76915819 76916053 -8779701 + MIR SINE MIR 8 254 -8 404 155 52 10 chr15 76916107 76916204 -8779550 - L1MA10 LINE L1 -9 6325 6225 3354 250 43 40 chr15 76916221 76917531 -8778223 - L1MDa LINE L1 -1091 5124 3812 * 3382 250 51 38 chr15 76917525 76917846 -8777908 - L1MDa LINE L1 -2662 3553 3238 1435 160 120 4 chr15 76917846 76918121 -8777633 - AluJb SINE Alu -5 307 1 3382 250 51 38 chr15 76918121 76918621 -8777133 - L1MDa LINE L1 -2977 3238 2746 1992 91 4 0 chr15 76918621 76918884 -8776870 - AluY SINE Alu -47 264 1 3382 250 51 38 chr15 76918884 76919439 -8776315 - L1MDa LINE L1 -3469 2746 2150 2134 270 133 14 chr15 76919453 76920406 -8775348 - L1MDa LINE L1 -4923 1473 407 714 253 83 49 chr15 76920441 76920706 -8775048 - L1MDa LINE L1 -6084 312 39 27 29 0 0 chr15 76920917 76920951 -8774803 + AT_rich Low_complexity Low_complexity 1 34 0 2213 102 0 3 chr15 76921052 76921347 -8774407 - AluSc SINE Alu -15 294 1 296 91 0 0 chr15 76921685 76921729 -8774025 + MADE1 DNA Mariner 2 45 -35 25 0 0 0 chr15 76922362 76922387 -8773367 + AT_rich Low_complexity Low_complexity 1 25 0 369 43 0 0 chr15 76923982 76924029 -8771725 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 51 0 0 chr15 76924342 76924381 -8771373 + AT_rich Low_complexity Low_complexity 1 39 0 318 287 86 29 chr15 76924538 76924712 -8771042 - MIR SINE MIR -19 243 60 554 101 0 0 chr15 76924740 76924819 -8770935 + MADE1 DNA Mariner 2 80 0 207 146 0 0 chr15 76928146 76928187 -8767567 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 2164 262 71 17 chr15 76928311 76929320 -8766434 - L1ME2 LINE L1 -39 6125 5060 3981 263 33 14 chr15 76929323 76930719 -8765035 + L1M4 LINE L1 2324 3746 -2400 414 174 0 14 chr15 76930719 76930788 -8764966 + Tigger2 DNA MER2_type 2 69 -2649 * 2354 178 43 2 chr15 76930786 76931207 -8764547 + Tigger2 DNA MER2_type 2280 2717 -1 2364 209 73 29 chr15 76931207 76931974 -8763780 + L1M4 LINE L1 3745 4545 -1601 2341 226 58 8 chr15 76931978 76932638 -8763116 + L1M4 LINE L1 4598 5290 -856 417 172 0 13 chr15 76932651 76932722 -8763032 + MLT1A1 LTR MaLR 230 293 -72 818 289 95 61 chr15 76932722 76934105 -8761649 - L1MDa LINE L1 -3930 2331 895 218 217 0 17 chr15 76934105 76934165 -8761589 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1503 291 63 52 chr15 76934197 76935056 -8760698 - L1MDa LINE L1 -5201 869 2 200 212 61 0 chr15 76935121 76935187 -8760567 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 183 327 72 48 chr15 76935848 76936056 -8759698 + L2 LINE L2 2645 2857 -457 1645 129 11 33 chr15 76936201 76936472 -8759282 - AluSx SINE Alu -47 265 1 23 0 0 0 chr15 76936535 76936558 -8759196 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chr15 76936986 76937012 -8758742 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 210 105 0 0 chr15 76937015 76937053 -8758701 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 1648 281 99 74 chr15 76937060 76938176 -8757578 - MER69B DNA AcHobo -82 1144 1 1859 116 7 50 chr15 76939734 76940036 -8755718 - AluSx SINE Alu -21 291 3 703 203 114 25 chr15 76940822 76941024 -8754730 + MIR SINE MIR 8 227 -35 458 156 0 0 chr15 76941208 76941285 -8754469 + MADE1 DNA Mariner 1 77 -3 332 260 0 10 chr15 76943016 76943112 -8752642 - L1ME3 LINE L1 -199 5963 5869 378 290 38 27 chr15 76943249 76943435 -8752319 - L1MEc LINE L1 -1975 4240 4053 801 160 20 27 chr15 76943456 76943606 -8752148 - FRAM SINE Alu -16 160 12 594 317 42 24 chr15 76943625 76944007 -8751747 - L1MEc LINE L1 -2165 4050 3662 532 143 0 0 chr15 76944721 76944805 -8750949 + FLAM_A SINE Alu 43 126 -16 33 66 0 0 chr15 76944998 76945059 -8750695 + AT_rich Low_complexity Low_complexity 1 61 0 228 322 59 59 chr15 76945287 76945439 -8750315 + MIR SINE MIR 15 166 -96 2397 60 0 10 chr15 76945561 76945860 -8749894 - AluY SINE Alu -4 307 12 2036 132 3 10 chr15 76945976 76946286 -8749468 - AluSx SINE Alu -4 308 1 205 171 0 0 chr15 76946569 76946604 -8749150 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7189 48 3 0 chr15 76947794 76948688 -8747066 + L1PA5 LINE L1 5254 6150 -4 892 258 4 26 chr15 76948699 76948963 -8746791 - L1ME2 LINE L1 -6 6158 5901 458 262 131 13 chr15 76949687 76949992 -8745762 - L1MEc LINE L1 -3997 2399 2059 406 293 59 19 chr15 76949998 76950254 -8745500 - L1MEc LINE L1 -5074 1131 866 240 311 21 42 chr15 76950262 76950455 -8745299 + L1ME LINE L1 11 199 -6660 2838 177 111 47 chr15 76950657 76951494 -8744260 + pTR5 LTR ERV1 743 1633 -805 1160 82 58 6 chr15 76951488 76951659 -8744095 + LTR12 LTR ERV1 535 714 0 * 4683 259 54 48 chr15 76952192 76952568 -8743186 + L1ME LINE L1 3273 3645 -3312 1832 120 14 21 chr15 76952568 76952852 -8742902 + AluSx SINE Alu 1 282 -30 4683 259 54 48 chr15 76952852 76954721 -8741033 + L1ME LINE L1 3645 5533 -1424 834 317 62 27 chr15 76954730 76955169 -8740585 - MLT1E3 LTR MaLR -4 620 167 1180 117 0 12 chr15 76955176 76955347 -8740407 - AluSc SINE Alu -3 306 138 451 229 59 0 chr15 76955352 76955470 -8740284 - MLT1E3 LTR MaLR -441 213 89 1654 260 39 15 chr15 76955518 76956524 -8739230 + L1ME LINE L1 5530 6547 -430 255 324 50 62 chr15 76956828 76957007 -8738747 - MIR SINE MIR 0 262 86 187 133 44 0 chr15 76957063 76957108 -8738646 + (TAA)n Simple_repeat Simple_repeat 2 48 0 548 186 0 16 chr15 76958038 76958167 -8737587 + GA-rich Low_complexity Low_complexity 2 128 0 27 29 0 0 chr15 76958181 76958215 -8737539 + AT_rich Low_complexity Low_complexity 1 34 0 1329 119 112 46 chr15 76960591 76960851 -8734903 + LTR12 LTR ERV1 1 277 -437 234 265 20 10 chr15 76960851 76960949 -8734805 + LTR30 LTR ERV1 544 642 -80 651 141 0 0 chr15 76960951 76961050 -8734704 + LTR12 LTR ERV1 481 579 -135 219 178 0 22 chr15 76962477 76962522 -8733232 + T-rich Low_complexity Low_complexity 5 48 0 24 32 0 0 chr15 76963266 76963297 -8732457 + AT_rich Low_complexity Low_complexity 1 31 0 233 299 152 47 chr15 76964471 76964534 -8731220 - MIR SINE MIR 0 262 207 1903 110 0 18 chr15 76964534 76964806 -8730948 + AluSq SINE Alu 29 295 -18 233 299 152 47 chr15 76964806 76964953 -8730801 - MIR SINE MIR -55 207 30 213 222 0 0 chr15 76965226 76965271 -8730483 + (CA)n Simple_repeat Simple_repeat 2 46 0 359 224 13 0 chr15 76965436 76965512 -8730242 + MER103 DNA DNA 33 109 -57 449 278 50 39 chr15 76966348 76966528 -8729226 - MIR SINE MIR -16 246 65 212 136 45 23 chr15 76966584 76966628 -8729126 - MIR SINE MIR -205 57 13 573 291 94 20 chr15 76966701 76966945 -8728809 - MIR SINE MIR 0 262 1 28 79 0 0 chr15 76967768 76967831 -8727923 + AT_rich Low_complexity Low_complexity 1 63 0 399 190 20 0 chr15 76967831 76967931 -8727823 - L1MA8 LINE L1 -10 6281 6180 3437 202 14 31 chr15 76967931 76969035 -8726719 - L1MA6 LINE L1 -278 5846 4759 1994 229 81 18 chr15 76969286 76969892 -8725862 - L1MA6 LINE L1 -1222 4748 4105 1125 207 65 49 chr15 76969893 76970338 -8725416 - L1MA6 LINE L1 -2605 3365 2914 * 3258 250 74 26 chr15 76970324 76972425 -8723329 - L1M4 LINE L1 -3480 2902 799 329 358 11 24 chr15 76972572 76972772 -8722982 - L1MA6 LINE L1 -5213 678 218 387 0 0 0 chr15 76972944 76972987 -8722767 + (CA)n Simple_repeat Simple_repeat 1 43 0 4307 86 16 0 chr15 76973477 76974056 -8721698 - LTR8 LTR ERV1 -102 589 2 27750 73 11 17 chr15 76974058 76977919 -8717835 - HUERS-P1 LTR ERV1 -1 6262 2424 2321 109 19 30 chr15 76978422 76978788 -8716966 + THE1B LTR MaLR 1 362 -2 393 146 186 81 chr15 76979594 76979756 -8715998 - MLT1H LTR MaLR 0 567 384 2200 108 13 13 chr15 76979855 76980162 -8715592 + AluSp SINE Alu 1 307 -6 1964 113 33 7 chr15 76981086 76981414 -8714340 + AluSx SINE Alu 1 335 0 21 0 0 0 chr15 76981569 76981590 -8714164 + AT_rich Low_complexity Low_complexity 1 21 0 576 278 98 48 chr15 76981991 76982448 -8713306 + MER113 DNA MER1_type? 38 517 -4 184 271 212 13 chr15 76983440 76983591 -8712163 - L2 LINE L2 -4 3309 3129 245 29 29 0 chr15 76985223 76985257 -8710497 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 301 267 111 7 chr15 76986189 76986324 -8709430 + MER103 DNA DNA 9 157 -9 270 339 6 12 chr15 76986826 76986845 -8708909 + (TA)n Simple_repeat Simple_repeat 1 19 -145 204 40 0 0 chr15 76986845 76986870 -8708884 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 270 339 6 12 chr15 76986870 76986928 -8708826 + (TA)n Simple_repeat Simple_repeat 19 76 -88 2111 130 39 33 chr15 76986928 76987290 -8708464 + THE1B LTR MaLR 1 364 0 270 339 6 12 chr15 76987290 76987376 -8708378 + (TA)n Simple_repeat Simple_repeat 76 164 0 281 330 0 0 chr15 76987380 76987477 -8708277 + MIR SINE MIR 166 262 0 204 333 58 23 chr15 76987868 76987955 -8707799 - L2 LINE L2 -22 3291 3202 221 319 173 11 chr15 76988361 76988552 -8707202 + L2 LINE L2 2831 3052 -220 327 104 0 0 chr15 76988636 76988684 -8707070 + (CA)n Simple_repeat Simple_repeat 2 49 0 291 54 0 0 chr15 76988684 76988721 -8707033 + (TG)n Simple_repeat Simple_repeat 1 37 0 351 0 0 0 chr15 76988798 76988837 -8706917 + (CA)n Simple_repeat Simple_repeat 2 40 0 347 202 34 17 chr15 76989914 76990033 -8705721 + GA-rich Low_complexity Low_complexity 2 122 0 1472 225 46 67 chr15 76990033 76990508 -8705246 - MLT1C LTR MaLR -2 465 1 28 0 0 0 chr15 76990653 76990681 -8705073 + AT_rich Low_complexity Low_complexity 1 28 0 252 347 208 25 chr15 76991344 76991892 -8703862 + L2 LINE L2 2325 2972 -342 42484 35 22 1 chr15 76991971 76997995 -8697759 - L1PA2 LINE L1 -4 6151 1 2067 112 32 0 chr15 76998022 76998300 -8697454 - AluSg SINE Alu -23 287 1 266 270 160 46 chr15 76998567 76998874 -8696880 - MLT1J LTR MaLR -54 457 116 362 261 126 67 chr15 76999107 76999345 -8696409 - L1MC4a LINE L1 -1841 5967 5716 425 304 54 0 chr15 76999389 76999537 -8696217 + MIR SINE MIR 1 156 -106 860 212 0 0 chr15 76999553 76999699 -8696055 - FRAM SINE Alu -21 155 10 4391 238 64 29 chr15 76999802 77000339 -8695415 - L1MD2 LINE L1 -13 6740 6223 1250 241 73 59 chr15 77000339 77000833 -8694921 - MLT1D LTR MaLR 0 505 5 4391 238 64 29 chr15 77000833 77002870 -8692884 - L1MD2 LINE L1 -530 6223 4081 2546 103 0 8 chr15 77002877 77003244 -8692510 - L1PA13 LINE L1 0 6163 5800 2237 90 10 0 chr15 77003244 77003556 -8692198 + L1P4 LINE L1 5372 5686 -482 1480 290 58 6 chr15 77003572 77004275 -8691479 - L1MD2 LINE L1 -2451 4089 3350 22 35 0 0 chr15 77004301 77004330 -8691424 + AT_rich Low_complexity Low_complexity 1 29 0 420 220 33 93 chr15 77004341 77004555 -8691199 - L1MD2 LINE L1 -49 6310 6110 1247 236 88 21 chr15 77004573 77005115 -8690639 - L1MD2 LINE L1 -3218 3322 2818 9700 93 1 0 chr15 77005115 77007243 -8688511 - L1PA7 LINE L1 -1 6153 4030 1247 236 88 21 chr15 77007243 77007820 -8687934 - L1MD2 LINE L1 -3722 2818 2083 1462 233 71 35 chr15 77007911 77008517 -8687237 - L1MD2 LINE L1 -4461 2079 1452 495 232 101 71 chr15 77008546 77008744 -8687010 - L1MA9 LINE L1 -5 6286 6083 1301 191 26 48 chr15 77008747 77009056 -8686698 - L1MC1 LINE L1 -7 6326 6025 589 312 49 40 chr15 77009106 77009430 -8686324 + MLT1I LTR MaLR 81 407 -2 894 162 40 61 chr15 77009565 77009793 -8685961 - L1MC1 LINE L1 -97 6236 6014 911 298 36 44 chr15 77009797 77010160 -8685594 + MLT1I LTR MaLR 50 409 0 250 173 25 99 chr15 77010667 77010748 -8685006 + LTR67 LTR ERVL 458 532 -25 4579 181 19 19 chr15 77011114 77012078 -8683676 - L1PB4 LINE L1 -1 6155 5190 201 74 0 0 chr15 77012081 77012108 -8683646 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 344 233 16 23 chr15 77012979 77013108 -8682646 + L1M LINE L1 5295 5422 -756 225 0 0 0 chr15 77013849 77013874 -8681880 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2280 206 82 53 chr15 77013876 77014550 -8681204 + L1MC3 LINE L1 7048 7740 -45 277 321 156 18 chr15 77014601 77014819 -8680935 + L3 LINE CR1 1288 1535 -42 180 0 0 0 chr15 77015172 77015192 -8680562 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3932 177 89 8 chr15 77016266 77017056 -8678698 - L1MC1 LINE L1 -11 6322 5469 1259 156 8 36 chr15 77017039 77017289 -8678465 - L1 LINE L1 -1508 5659 5417 * 43504 37 4 4 chr15 77017288 77023431 -8672323 - L1PA3 LINE L1 -3 6152 9 8501 210 52 91 chr15 77023435 77029409 -8666345 - L1 LINE L1 -1727 5440 1 718 204 62 31 chr15 77029391 77029617 -8666137 - L1MC/D LINE L1 -838 5506 5274 * 6215 38 7 12 chr15 77029591 77030409 -8665345 - L1PA7 LINE L1 -4 6150 5258 575 173 27 0 chr15 77030409 77030519 -8665235 + L1M2a LINE L1 157 269 -6899 1237 216 129 0 chr15 77030520 77030798 -8664956 + L1M2a LINE L1 346 659 -6509 637 227 13 67 chr15 77030804 77031042 -8664712 - L1MC/D LINE L1 -1198 4948 4724 258 275 12 12 chr15 77031059 77031139 -8664615 + L1M2a LINE L1 658 737 -6431 * 3296 80 2 0 chr15 77031132 77031584 -8664170 + L1P LINE L1 4777 5229 -917 2946 249 37 41 chr15 77031571 77032745 -8663009 - L1MEc LINE L1 -794 5632 4464 * 2895 244 58 30 chr15 77032731 77033719 -8662035 - L1MEc LINE L1 -2209 4217 3203 * 1365 207 100 32 chr15 77033756 77034167 -8661587 - MSTB2 LTR MaLR -12 445 7 1460 204 23 29 chr15 77034191 77034535 -8661219 - L1MA9 LINE L1 -38 6274 5933 1913 248 12 20 chr15 77034538 77035123 -8660631 - L1MEc LINE L1 -3211 3215 2636 533 81 0 0 chr15 77035120 77035194 -8660560 - L1P LINE L1 -785 5387 5314 * 352 243 64 87 chr15 77035193 77035234 -8660520 - L1MEc LINE L1 -3791 2642 2602 * 1330 232 7 7 chr15 77035234 77035536 -8660218 - AluJo SINE Alu 0 302 1 352 243 64 87 chr15 77035536 77035667 -8660087 - L1MEc LINE L1 -3831 2602 2467 * 1056 193 102 0 chr15 77035654 77035898 -8659856 - L1MEc LINE L1 -5100 1326 1058 1564 209 82 20 chr15 77035898 77036290 -8659464 + MSTC LTR MaLR 1 416 -12 3133 239 36 55 chr15 77036299 77037358 -8658396 - L1MEc LINE L1 -5363 1063 25 290 284 12 12 chr15 77037766 77037847 -8657907 - MER94 DNA DNA 0 134 54 227 344 93 26 chr15 77038428 77038579 -8657175 + L2 LINE L2 2708 2868 -446 22 0 0 0 chr15 77038958 77038980 -8656774 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr15 77041549 77041583 -8654171 + (GGAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr15 77042248 77042269 -8653485 + AT_rich Low_complexity Low_complexity 1 21 0 282 187 176 22 chr15 77043189 77043280 -8652474 + MLT1L LTR MaLR 509 613 -2 2242 148 16 56 chr15 77043411 77043843 -8651911 - MSTB1 LTR MaLR -17 415 1 2200 104 0 7 chr15 77045858 77046156 -8649598 + AluSx SINE Alu 1 296 -16 946 223 14 24 chr15 77047506 77047793 -8647961 - L1M4 LINE L1 -848 5298 5015 2862 207 51 1 chr15 77047823 77048588 -8647166 + L1MB3 LINE L1 5323 6176 -7 2885 196 57 49 chr15 77048888 77049647 -8646107 - L1MB8 LINE L1 -1 6177 5413 1943 142 37 0 chr15 77050567 77050863 -8644891 - AluSx SINE Alu -5 307 1 1124 169 34 123 chr15 77053395 77053745 -8642009 - L1MA8 LINE L1 -22 6290 5972 2651 281 52 23 chr15 77054564 77055571 -8640183 + HERVL LTR ERVL 1372 2407 -3357 378 0 0 0 chr15 77055661 77055703 -8640051 + (TG)n Simple_repeat Simple_repeat 2 43 0 358 280 18 20 chr15 77055735 77055944 -8639810 + HERVL LTR ERVL 4577 4763 -891 2493 65 0 0 chr15 77056135 77056428 -8639326 - AluY SINE Alu -18 293 1 329 260 0 14 chr15 77058006 77058079 -8637675 - L2 LINE L2 0 3272 3201 1846 157 64 14 chr15 77058800 77059157 -8636597 + THE1C LTR MaLR 1 375 0 9244 113 65 43 chr15 77059157 77060703 -8635051 + THE1C-int LTR MaLR 1 1580 0 1975 134 64 20 chr15 77060705 77061062 -8634692 + THE1C LTR MaLR 3 375 0 252 309 32 0 chr15 77062121 77062215 -8633539 - MLT1J LTR MaLR -331 180 84 2394 88 13 0 chr15 77063436 77063860 -8631894 - AluSp SINE Alu 0 428 1 21 36 0 0 chr15 77063870 77063898 -8631856 + AT_rich Low_complexity Low_complexity 1 28 0 2678 183 70 23 chr15 77065014 77065589 -8630165 - MER21B LTR ERV1 -14 849 248 1011 215 56 21 chr15 77065766 77065999 -8629755 - MER21B LTR ERV1 -622 241 1 2103 287 77 37 chr15 77066209 77066357 -8629397 - L1ME LINE L1 -4512 1568 1427 180 77 0 0 chr15 77066357 77066383 -8629371 + (TA)n Simple_repeat Simple_repeat 2 27 0 2103 287 77 37 chr15 77066383 77066753 -8629001 - L1ME LINE L1 -4653 1427 1073 3802 141 72 67 chr15 77066753 77067532 -8628222 - LTR39 LTR ERV1 0 783 1 2103 287 77 37 chr15 77067532 77068525 -8627229 - L1ME LINE L1 -5007 1073 10 51 0 0 0 chr15 77069089 77069140 -8626614 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chr15 77069668 77069694 -8626060 + (A)n Simple_repeat Simple_repeat 1 26 0 291 235 6 27 chr15 77070368 77070551 -8625203 + (TA)n Simple_repeat Simple_repeat 1 179 0 911 302 28 26 chr15 77070624 77071157 -8624597 - L1ME3A LINE L1 -329 5841 5308 186 347 0 0 chr15 77072248 77072323 -8623431 + MIR SINE MIR 74 148 -114 189 0 0 0 chr15 77072636 77072657 -8623097 + (GA)n Simple_repeat Simple_repeat 2 22 0 1186 162 4 44 chr15 77072758 77072986 -8622768 - MER20 DNA MER1_type 0 219 1 1328 183 76 28 chr15 77073379 77073668 -8622086 - AluJo SINE Alu -9 303 1 622 250 40 16 chr15 77074340 77074534 -8621220 - MLT2B1 LTR ERVL 0 520 343 809 214 5 16 chr15 77074825 77075017 -8620737 - MLT2B1 LTR ERVL -321 199 10 577 300 60 21 chr15 77075966 77076199 -8619555 - MIR SINE MIR -19 243 2 433 204 19 19 chr15 77077254 77077362 -8618392 + MER81 DNA DNA 6 113 -1 234 0 0 0 chr15 77078959 77078985 -8616769 + (T)n Simple_repeat Simple_repeat 1 26 0 292 331 88 39 chr15 77079656 77079813 -8615941 - MIR SINE MIR -70 138 30 289 277 27 18 chr15 77080104 77080216 -8615538 + MER103 DNA DNA 47 159 -7 200 340 19 48 chr15 77080216 77080319 -8615435 - MIR SINE MIR -92 116 17 1549 117 26 22 chr15 77080614 77080844 -8614910 + 7SLRNA srpRNA srpRNA 1 231 -89 446 372 33 6 chr15 77081169 77081352 -8614402 - MER91A DNA MER1_type 0 196 9 333 309 58 7 chr15 77082030 77082169 -8613585 + MIR SINE MIR 20 165 -97 423 272 142 42 chr15 77133148 77133387 -8562367 - L1ME1 LINE L1 -6 6396 6134 893 276 55 111 chr15 77133391 77133961 -8561793 + MLT2B2 LTR ERVL 15 552 -2 2602 238 47 8 chr15 77133963 77135053 -8560701 - L1ME1 LINE L1 -261 6139 5007 5875 169 13 35 chr15 77135485 77136672 -8559082 + L1P LINE L1 4198 5357 -789 1254 256 24 24 chr15 77136669 77137095 -8558659 - L1ME1 LINE L1 -3101 3281 2856 * 3515 149 16 2 chr15 77137104 77137621 -8558133 + MER1A DNA MER1_type 6 529 0 5024 203 47 21 chr15 77137622 77139056 -8556698 - L1ME1 LINE L1 -3540 2842 1368 1647 155 14 80 chr15 77139056 77139418 -8556336 - MER44D DNA MER2_type -1 608 1 5024 203 47 21 chr15 77139418 77139489 -8556265 - L1ME1 LINE L1 -5014 1368 1300 703 204 24 0 chr15 77139580 77139747 -8556007 + L1MB5 LINE L1 6003 6173 -1 22 70 0 0 chr15 77139748 77139791 -8555963 + AT_rich Low_complexity Low_complexity 1 43 0 5492 214 27 9 chr15 77139804 77141058 -8554696 - L1PA15 LINE L1 -846 5300 4024 4962 156 16 3 chr15 77141059 77141912 -8553842 + L1PA15 LINE L1 5297 6160 -5 204 204 0 0 chr15 77142040 77142084 -8553670 + (CA)n Simple_repeat Simple_repeat 1 44 0 1091 257 73 26 chr15 77142089 77142474 -8553280 - L1MC/D LINE L1 -2089 5719 5317 269 211 53 21 chr15 77142498 77142593 -8553161 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 355 289 24 60 chr15 77142867 77143111 -8552643 - L1MC/D LINE L1 -1216 4930 4693 2263 62 0 17 chr15 77144428 77144761 -8550993 - AluY SINE Alu 0 328 1 338 165 59 0 chr15 77144904 77144989 -8550765 + L1MC4 LINE L1 6614 6703 -1339 233 150 0 0 chr15 77144989 77145029 -8550725 + L1MC4 LINE L1 6664 6703 -1339 * 248 291 47 0 chr15 77145021 77145107 -8550647 - L1MC4 LINE L1 -1339 6703 6614 284 137 0 0 chr15 77145128 77145179 -8550575 + MER4-int LTR ERV1 1112 1162 -5436 289 246 0 9 chr15 77145184 77145291 -8550463 + L1MC4 LINE L1 2006 6983 -1339 252 302 0 0 chr15 77145236 77145322 -8550432 - L1MC4 LINE L1 -1340 6702 6617 * 317 189 27 0 chr15 77145324 77145398 -8550356 + (CATATA)n Simple_repeat Simple_repeat 5 80 0 398 298 18 26 chr15 77145473 77145587 -8550167 + MER81 DNA DNA 1 113 -1 24 0 0 0 chr15 77146790 77146814 -8548940 + AT_rich Low_complexity Low_complexity 1 24 0 432 276 8 16 chr15 77147492 77147615 -8548139 - MIR SINE MIR -21 241 120 915 62 0 0 chr15 77147828 77147940 -8547814 + AluY SINE Alu 191 302 -9 2795 104 19 5 chr15 77147980 77148395 -8547359 + L1PA11 LINE L1 5750 6170 -4 23 33 0 0 chr15 77149128 77149158 -8546596 + AT_rich Low_complexity Low_complexity 1 30 0 186 71 0 0 chr15 77149447 77149475 -8546279 + (TA)n Simple_repeat Simple_repeat 1 28 0 2090 128 75 20 chr15 77149552 77149897 -8545857 + THE1B LTR MaLR 1 364 0 650 303 38 38 chr15 77149988 77150249 -8545505 - MIR SINE MIR 0 262 2 486 253 110 99 chr15 77151087 77151678 -8544076 + L2 LINE L2 2667 3251 -62 397 275 64 78 chr15 77152710 77152851 -8542903 - L2 LINE L2 0 3313 3175 1699 50 5 9 chr15 77152851 77153072 -8542682 + L1PA8 LINE L1 5946 6165 -7 397 275 64 78 chr15 77153072 77153148 -8542606 - L2 LINE L2 -138 3175 3099 507 194 0 0 chr15 77153299 77153407 -8542347 + (CA)n Simple_repeat Simple_repeat 1 108 0 241 157 0 71 chr15 77153411 77153481 -8542273 - L1MC4 LINE L1 -1340 6702 6638 2339 199 10 43 chr15 77153484 77153977 -8541777 - MLT2B1 LTR ERVL -43 477 1 419 287 49 0 chr15 77154151 77154273 -8541481 + MLT1J LTR MaLR 378 505 -6 325 357 63 6 chr15 77154344 77154524 -8541230 - MIR SINE MIR -54 208 19 3893 289 77 23 chr15 77156692 77158059 -8537695 - ERVL-E LTR ERVL -1608 4156 2717 641 283 85 0 chr15 77158071 77158248 -8537506 + MER58C DNA MER1_type 1 192 -23 2531 303 93 57 chr15 77158260 77159820 -8535934 - ERVL-E LTR ERVL -3061 2703 955 1468 156 38 86 chr15 77159820 77160134 -8535620 + AluJo SINE Alu 1 299 -13 2531 303 93 57 chr15 77160134 77160812 -8534942 - ERVL-E LTR ERVL -4809 955 303 1685 298 33 28 chr15 77161042 77161619 -8534135 - MLT2E LTR ERVL 0 628 49 233 328 46 0 chr15 77161630 77161727 -8534027 + MIR SINE MIR 52 151 -63 493 309 100 23 chr15 77161939 77162159 -8533595 + MIR SINE MIR 26 262 0 212 274 97 0 chr15 77162314 77162376 -8533378 + L2 LINE L2 3184 3251 -21 1884 45 65 8 chr15 77162697 77162944 -8532810 + L1PA3 LINE L1 5892 6152 -3 402 353 115 7 chr15 77164488 77164879 -8530875 + L2 LINE L2 2639 3067 -246 834 275 83 58 chr15 77164879 77165267 -8530487 + L2 LINE L2 2517 2894 -419 1241 19 0 31 chr15 77165267 77165426 -8530328 - L1PA5 LINE L1 0 6154 6001 834 275 83 58 chr15 77165426 77165814 -8529940 + L2 LINE L2 2894 3309 -4 309 260 278 6 chr15 77166184 77166353 -8529401 - MER5C DNA MER1_type 0 324 110 26 0 0 0 chr15 77166808 77166834 -8528920 + AT_rich Low_complexity Low_complexity 1 26 0 1997 137 3 0 chr15 77167568 77167860 -8527894 + AluSx SINE Alu 3 295 -17 237 275 147 9 chr15 77167970 77168079 -8527675 - MER5C DNA MER1_type -200 124 1 3674 40 0 0 chr15 77168083 77168530 -8527224 + L1PA4 LINE L1 5705 6151 -4 1550 268 235 60 chr15 77168544 77170250 -8525504 + L2 LINE L2 1316 3312 -1 340 242 48 65 chr15 77170305 77170429 -8525325 + HAL1 LINE L1 1321 1442 -1065 23 0 0 0 chr15 77170650 77170673 -8525081 + AT_rich Low_complexity Low_complexity 1 23 0 183 205 0 0 chr15 77171596 77171635 -8524119 + (TAA)n Simple_repeat Simple_repeat 3 41 0 455 288 60 74 chr15 77171653 77171868 -8523886 - MIR SINE MIR -21 241 30 6342 92 20 0 chr15 77172647 77173982 -8521772 + L1PA8 LINE L1 4814 6171 -1 252 111 0 0 chr15 77174588 77174624 -8521130 - U2 snRNA snRNA -152 36 1 286 303 143 0 chr15 77176847 77176966 -8518788 - MIR SINE MIR -19 243 108 2115 118 0 22 chr15 77177299 77177614 -8518140 + AluSg SINE Alu 3 310 0 759 180 53 0 chr15 77177859 77178009 -8517745 + FAM SINE Alu 10 167 -18 303 198 21 73 chr15 77178255 77178351 -8517403 - L1MCa LINE L1 -4342 2084 1994 * 309 277 21 21 chr15 77178275 77178369 -8517385 + L1MC4 LINE L1 6611 6704 -1338 * 365 234 9 28 chr15 77178334 77178441 -8517313 - L1MC4 LINE L1 -1339 6703 6599 395 250 43 17 chr15 77179318 77179434 -8516320 - MLT1J2 LTR MaLR -69 381 263 244 274 28 30 chr15 77179507 77179624 -8516130 - MLT1J2 LTR MaLR -305 142 17 715 324 112 37 chr15 77182807 77183424 -8512330 - MLT2F LTR ERVL 0 663 1 23 33 0 0 chr15 77184106 77184136 -8511618 + AT_rich Low_complexity Low_complexity 1 30 0 295 97 16 16 chr15 77184170 77184232 -8511522 + (CA)n Simple_repeat Simple_repeat 2 63 0 238 319 0 0 chr15 77184345 77184436 -8511318 + (TA)n Simple_repeat Simple_repeat 2 92 0 283 224 128 16 chr15 77184480 77184605 -8511149 - L1ME LINE L1 -251 5870 5732 21 0 0 0 chr15 77184985 77185006 -8510748 + AT_rich Low_complexity Low_complexity 1 21 0 213 228 11 22 chr15 77185801 77185893 -8509861 + GA-rich Low_complexity Low_complexity 2 92 0 206 267 33 0 chr15 77186190 77186250 -8509504 + L2 LINE L2 3208 3269 -3 214 143 20 20 chr15 77186328 77186377 -8509377 + A-rich Low_complexity Low_complexity 2 50 0 21 36 0 0 chr15 77186377 77186405 -8509349 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr15 77186537 77186578 -8509176 + AT_rich Low_complexity Low_complexity 1 41 0 183 277 0 92 chr15 77186683 77186748 -8509006 + L2 LINE L2 3212 3270 -2 1974 137 124 0 chr15 77186972 77187294 -8508460 + THE1B LTR MaLR 3 364 0 208 359 59 12 chr15 77187646 77187816 -8507938 + MIR SINE MIR 20 197 -65 248 264 33 33 chr15 77188164 77188255 -8507499 - MIR SINE MIR -108 154 64 239 274 0 0 chr15 77188280 77188331 -8507423 - MIR3 SINE MIR -54 154 104 184 300 0 14 chr15 77188376 77188446 -8507308 + MIR SINE MIR 53 121 -141 429 208 24 48 chr15 77188557 77188682 -8507072 + MER103 DNA DNA 2 123 -43 492 253 57 0 chr15 77188831 77188989 -8506765 - L1ME3 LINE L1 -94 6068 5902 3122 226 44 27 chr15 77189075 77190050 -8505704 - L1ME1 LINE L1 -5 6161 5172 2128 257 40 18 chr15 77190152 77190946 -8504808 - L1ME1 LINE L1 -985 5161 4350 346 327 7 27 chr15 77191232 77191382 -8504372 - MIR SINE MIR 0 262 116 2138 198 50 2 chr15 77191677 77192121 -8503633 - MLT1C LTR MaLR 0 467 3 189 160 40 60 chr15 77193193 77193243 -8502511 - L2 LINE L2 -2 3311 3263 316 335 50 54 chr15 77193683 77193943 -8501811 - L2 LINE L2 -569 2745 2487 21 36 0 0 chr15 77194684 77194712 -8501042 + AT_rich Low_complexity Low_complexity 1 28 0 2622 30 0 0 chr15 77195604 77195906 -8499848 - AluYa5 SINE Alu -9 302 1 347 346 74 0 chr15 77198273 77198435 -8497319 - MIR SINE MIR -38 224 51 484 213 4 167 chr15 77198956 77199196 -8496558 - L2 LINE L2 -4 3309 3109 183 320 78 46 chr15 77199374 77199600 -8496154 - L2 LINE L2 -389 2925 2685 1729 157 14 35 chr15 77199600 77200038 -8495716 + AluSx SINE Alu 1 432 0 183 320 78 46 chr15 77200038 77200090 -8495664 - L2 LINE L2 -629 2685 2636 235 25 50 25 chr15 77200091 77200131 -8495623 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 351 0 0 0 chr15 77200497 77200536 -8495218 + (TG)n Simple_repeat Simple_repeat 1 39 0 269 169 0 15 chr15 77200554 77200619 -8495135 + (CATA)n Simple_repeat Simple_repeat 1 64 0 1274 300 31 8 chr15 77200699 77201089 -8494665 - LTR16A LTR ERVL 0 450 52 329 377 27 14 chr15 77201877 77202100 -8493654 - ERVL LTR ERVL -1072 4692 4467 901 217 5 0 chr15 77202175 77202359 -8493395 - MLT1B LTR MaLR 0 390 206 6485 90 3 5 chr15 77202429 77203549 -8492205 - L1PA10 LINE L1 -11 6157 5032 7020 163 14 3 chr15 77203549 77204787 -8490967 - L1P LINE L1 -3407 2739 1488 528 224 77 7 chr15 77204788 77204931 -8490823 - MLT1B LTR MaLR -216 174 22 308 340 0 28 chr15 77204937 77205043 -8490711 - MLT1B-int LTR MaLR -322 1413 1311 252 259 0 0 chr15 77205305 77205359 -8490395 - MLT1B-int LTR MaLR -499 872 819 1721 211 122 5 chr15 77205368 77205857 -8489897 - MLT1B-int LTR MaLR -707 664 1 236 158 0 0 chr15 77205857 77205895 -8489859 - MLT2D LTR ERVL 0 414 377 186 43 0 0 chr15 77205906 77205929 -8489825 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 486 88 0 0 chr15 77206081 77206149 -8489605 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1039 287 94 33 chr15 77206149 77206574 -8489180 - MLT2B1 LTR ERVL -66 454 4 581 348 41 5 chr15 77206574 77206795 -8488959 - ERVL LTR ERVL -1391 4373 4145 1541 294 63 43 chr15 77207148 77207282 -8488472 - ERVL LTR ERVL -3416 1580 1450 2057 164 104 3 chr15 77207282 77207667 -8488087 - MSTB LTR MaLR -2 424 1 1541 294 63 43 chr15 77207667 77208247 -8487507 - ERVL LTR ERVL -3546 1450 852 409 227 32 97 chr15 77208547 77208732 -8487022 - FAM SINE Alu -2 173 1 1887 257 28 14 chr15 77208806 77209534 -8486220 - L1M4c LINE L1 -2875 3769 3032 617 233 12 12 chr15 77209562 77209725 -8486029 - L1M4c LINE L1 -3683 2961 2799 654 282 65 60 chr15 77209781 77210348 -8485406 - L1M4c LINE L1 -3953 2693 2164 21 36 0 0 chr15 77210430 77210458 -8485296 + AT_rich Low_complexity Low_complexity 1 28 0 1463 257 46 56 chr15 77210515 77210717 -8485037 - L1M4c LINE L1 -4551 2095 1893 2019 142 3 0 chr15 77210717 77211026 -8484728 - AluSx SINE Alu -2 310 1 1463 257 46 56 chr15 77211026 77212031 -8483723 - L1M4c LINE L1 -4753 1893 915 273 282 235 16 chr15 77214661 77215044 -8480710 - L1ME4a LINE L1 -65 6056 5590 183 80 0 0 chr15 77215717 77215742 -8480012 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 77215780 77215808 -8479946 + AT_rich Low_complexity Low_complexity 1 28 0 440 345 102 33 chr15 77215824 77216520 -8479234 - L1ME4a LINE L1 -1381 4765 4022 354 328 85 11 chr15 77216845 77217022 -8478732 + MIR SINE MIR 64 253 -9 29 28 0 0 chr15 77217263 77217299 -8478455 + AT_rich Low_complexity Low_complexity 1 36 0 248 362 43 11 chr15 77217941 77218035 -8477719 - L2 LINE L2 -48 3224 3128 1833 194 51 55 chr15 77218064 77218554 -8477200 - MLT1D LTR MaLR 0 505 18 24 32 0 0 chr15 77219562 77219593 -8476161 + AT_rich Low_complexity Low_complexity 1 31 0 1816 133 0 0 chr15 77219636 77219885 -8475869 + AluSg SINE Alu 37 285 -25 330 26 0 0 chr15 77221255 77221294 -8474460 + (TG)n Simple_repeat Simple_repeat 1 39 0 657 270 55 66 chr15 77222675 77222799 -8472955 + L2 LINE L2 2143 2267 -1047 387 60 0 0 chr15 77222799 77222849 -8472905 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 657 270 55 66 chr15 77222849 77223105 -8472649 + L2 LINE L2 2267 2519 -795 325 260 91 39 chr15 77223446 77223626 -8472128 - MER5A DNA MER1_type -1 177 1 391 302 52 32 chr15 77225269 77225462 -8470292 - MIR SINE MIR -15 247 53 23 0 0 0 chr15 77225733 77225756 -8469998 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr15 77226157 77226194 -8469560 + (TA)n Simple_repeat Simple_repeat 2 38 0 44 70 0 0 chr15 77226194 77226280 -8469474 + AT_rich Low_complexity Low_complexity 1 86 0 213 291 256 0 chr15 77226390 77226476 -8469278 + MIR SINE MIR 34 141 -121 359 281 0 0 chr15 77226602 77226684 -8469070 + L2 LINE L2 3187 3268 -4 517 241 105 12 chr15 77227740 77227902 -8467852 + MER5B DNA MER1_type 1 177 -1 24 32 0 0 chr15 77228144 77228175 -8467579 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr15 77228243 77228267 -8467487 + AT_rich Low_complexity Low_complexity 1 24 0 491 17 0 0 chr15 77228667 77228727 -8467027 - L1P2 LINE L1 -680 5474 5415 357 0 0 0 chr15 77228727 77228770 -8466984 + L1PA3 LINE L1 6109 6152 -3 38 0 0 0 chr15 77228770 77228808 -8466946 + AT_rich Low_complexity Low_complexity 1 38 0 207 286 167 12 chr15 77229568 77229652 -8466102 + MIR3 SINE MIR 14 110 -98 6687 68 19 0 chr15 77229687 77230745 -8465009 - L1PA6 LINE L1 0 6154 5077 2804 87 0 0 chr15 77230763 77231155 -8464599 + L1P LINE L1 4604 4995 -1151 269 365 19 19 chr15 77231595 77231806 -8463948 - L1ME LINE L1 -425 5696 5486 21 36 0 0 chr15 77232979 77233007 -8462747 + AT_rich Low_complexity Low_complexity 1 28 0 384 338 27 58 chr15 77233036 77233447 -8462307 + L1MEd LINE L1 851 1248 -4871 407 232 49 71 chr15 77233561 77233785 -8461969 + HAL1 LINE L1 1429 1647 -860 261 281 124 51 chr15 77234468 77234685 -8461069 + L2 LINE L2 1744 1976 -1338 538 290 69 20 chr15 77234696 77234941 -8460813 + L2 LINE L2 2234 2490 -824 1534 141 0 30 chr15 77235004 77235273 -8460481 + AluJb SINE Alu 50 310 -2 647 270 124 45 chr15 77235296 77235697 -8460057 + L2 LINE L2 2701 3139 -174 189 339 82 49 chr15 77236564 77236747 -8459007 + L2 LINE L2 3076 3264 -8 219 114 0 0 chr15 77237264 77237299 -8458455 + (TG)n Simple_repeat Simple_repeat 2 36 0 270 50 0 0 chr15 77237334 77237374 -8458380 - L1PA8 LINE L1 -2 6170 6131 6799 107 13 7 chr15 77237474 77238722 -8457032 - L1PA8A LINE L1 -586 5860 4611 2104 202 74 4 chr15 77238762 77239263 -8456491 - L1ME1 LINE L1 -249 5917 5382 310 194 21 54 chr15 77239276 77239369 -8456385 - L1MC4 LINE L1 -1339 6703 6614 1919 107 7 4 chr15 77239399 77239670 -8456084 - AluSx SINE Alu -40 272 1 701 209 40 95 chr15 77239670 77240019 -8455735 - L1ME1 LINE L1 -775 5371 5042 19268 155 10 23 chr15 77240334 77242055 -8453699 - L1PA8A LINE L1 -1824 4637 2896 2726 29 0 3 chr15 77242055 77242366 -8453388 - AluYa5 SINE Alu -1 310 1 19268 155 10 23 chr15 77242366 77245277 -8450477 - L1PA8A LINE L1 -3565 2896 4 244 105 0 0 chr15 77245397 77245435 -8450319 + L1P3 LINE L1 1555 1592 -4869 1329 142 23 0 chr15 77245464 77245682 -8450072 + L1PA11 LINE L1 5952 6174 0 227 329 38 44 chr15 77245700 77245858 -8449896 + MIR SINE MIR 102 258 -4 375 298 12 12 chr15 77245917 77246078 -8449676 - L1ME4a LINE L1 -269 5852 5692 182 315 27 0 chr15 77246252 77246325 -8449429 - L2 LINE L2 -205 3067 2993 2022 179 71 48 chr15 77246418 77247131 -8448623 + L1M3 LINE L1 4818 5521 -647 762 295 128 6 chr15 77247129 77247488 -8448266 + L1MC/D LINE L1 5389 5791 -2017 * 239 314 6 35 chr15 77247525 77247694 -8448060 + L1MC5 LINE L1 7613 7776 -185 29 70 0 0 chr15 77247831 77247888 -8447866 + AT_rich Low_complexity Low_complexity 1 57 0 394 312 37 18 chr15 77248013 77248122 -8447632 - L3 LINE CR1 -75 1502 1392 248 319 264 6 chr15 77248676 77248858 -8446896 - MIR SINE MIR -8 254 26 308 376 132 18 chr15 77248884 77249496 -8446258 - L3 LINE CR1 -483 1094 413 203 340 32 11 chr15 77250318 77250412 -8445342 - L2 LINE L2 -2 3270 3175 325 310 85 0 chr15 77250590 77250719 -8445035 + MIR SINE MIR 1 140 -122 270 295 50 29 chr15 77250789 77250928 -8444826 - MIR SINE MIR -19 243 102 1158 190 47 117 chr15 77251535 77251926 -8443828 + MLT2C1 LTR ERVL 1 361 -36 360 0 0 0 chr15 77251926 77251966 -8443788 + (CA)n Simple_repeat Simple_repeat 1 40 0 1158 190 47 117 chr15 77251966 77252001 -8443753 + MLT2C1 LTR ERVL 361 397 0 1833 65 4 24 chr15 77252539 77252786 -8442968 + L1PA8 LINE L1 5907 6180 0 195 31 0 62 chr15 77252786 77252818 -8442936 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 21 57 0 0 chr15 77253097 77253132 -8442622 + AT_rich Low_complexity Low_complexity 1 35 0 417 240 66 0 chr15 77254209 77254330 -8441424 - MER94 DNA DNA -3 131 3 358 280 93 79 chr15 77254480 77254858 -8440896 + L1M4 LINE L1 2740 3122 -3024 249 33 0 0 chr15 77255780 77255810 -8439944 + (TA)n Simple_repeat Simple_repeat 2 31 0 2449 71 0 0 chr15 77255810 77256107 -8439647 - AluSp SINE Alu -16 297 1 30 0 0 0 chr15 77256193 77256223 -8439531 + AT_rich Low_complexity Low_complexity 1 30 0 325 299 45 30 chr15 77259233 77259367 -8436387 + MER91C DNA MER1_type 3 138 -2 216 341 135 0 chr15 77260226 77260352 -8435402 - MIR SINE MIR -82 180 38 305 290 148 23 chr15 77261216 77261433 -8434321 + MIR SINE MIR 18 261 -1 24 0 0 0 chr15 77262548 77262572 -8433182 + AT_rich Low_complexity Low_complexity 1 24 0 306 366 5 89 chr15 77263317 77263519 -8432235 - MIR3 SINE MIR -23 185 1 183 184 0 0 chr15 77263737 77263775 -8431979 + (TATG)n Simple_repeat Simple_repeat 4 41 0 241 257 59 73 chr15 77263898 77264170 -8431584 - L1MEd LINE L1 -4912 1207 940 27 87 0 0 chr15 77264261 77264330 -8431424 + AT_rich Low_complexity Low_complexity 1 69 0 345 82 0 0 chr15 77264593 77264642 -8431112 + (CA)n Simple_repeat Simple_repeat 2 50 0 1983 135 0 0 chr15 77264733 77265043 -8430711 + AluSg SINE Alu 1 310 0 187 329 26 0 chr15 77265178 77265254 -8430500 + L2 LINE L2 3193 3270 -2 259 261 34 11 chr15 77265272 77265360 -8430394 + MIR SINE MIR 161 250 -12 27 49 0 0 chr15 77265372 77265413 -8430341 + AT_rich Low_complexity Low_complexity 1 41 0 329 0 24 0 chr15 77265652 77265693 -8430061 + (TC)n Simple_repeat Simple_repeat 1 42 0 273 29 0 0 chr15 77265692 77265726 -8430028 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 510 249 118 29 chr15 77265738 77265983 -8429771 + L1MC5 LINE L1 7250 7516 -445 703 189 73 0 chr15 77265986 77266150 -8429604 - L1MB1 LINE L1 -156 6012 5837 627 183 0 1 chr15 77266152 77266291 -8429463 + L1MB1 LINE L1 6038 6155 -13 1925 140 19 10 chr15 77266297 77266604 -8429150 - AluSx SINE Alu -1 311 2 294 237 22 44 chr15 77266673 77266808 -8428946 + L1MC5 LINE L1 7599 7730 -231 20425 162 29 41 chr15 77266815 77270541 -8425213 + L1M1 LINE L1 13 3781 -3784 192 77 0 0 chr15 77270541 77270567 -8425187 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 20425 162 29 41 chr15 77270567 77271658 -8424096 + L1M1 LINE L1 3781 4883 -2682 2397 68 0 0 chr15 77271658 77271951 -8423803 + AluY SINE Alu 1 293 -18 20425 162 29 41 chr15 77271951 77273900 -8421854 + L1M1 LINE L1 4883 6689 -876 760 147 47 0 chr15 77273919 77274089 -8421665 + CT-rich Low_complexity Low_complexity 3 180 0 207 204 0 0 chr15 77274103 77274147 -8421607 + C-rich Low_complexity Low_complexity 3 46 0 1570 187 0 14 chr15 77274149 77274438 -8421316 - AluJo SINE Alu -17 295 11 23 68 0 0 chr15 77274528 77274572 -8421182 + AT_rich Low_complexity Low_complexity 1 44 0 1899 118 4 4 chr15 77274737 77275007 -8420747 + AluSg SINE Alu 1 270 -40 248 0 31 0 chr15 77275007 77275039 -8420715 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 356 198 33 22 chr15 77275096 77275187 -8420567 - MLT1I LTR MaLR 0 409 318 768 200 0 0 chr15 77275268 77275398 -8420356 + FLAM_A SINE Alu 1 130 -3 191 375 0 0 chr15 77276095 77276159 -8419595 - L2 LINE L2 -1 3271 3208 2005 135 0 10 chr15 77276371 77276667 -8419087 + AluSx SINE Alu 1 293 -19 1978 120 23 16 chr15 77278093 77278402 -8417352 - AluY SINE Alu 0 311 1 211 323 0 0 chr15 77278552 77278617 -8417137 - L2 LINE L2 0 3313 3249 199 247 14 110 chr15 77279659 77279732 -8416022 - L3 LINE CR1 -17 1560 1495 280 262 0 65 chr15 77280264 77280371 -8415383 + MIR SINE MIR 131 230 -32 31 76 0 0 chr15 77280714 77280780 -8414974 + AT_rich Low_complexity Low_complexity 1 66 0 201 250 66 0 chr15 77280896 77280972 -8414782 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 239 261 75 60 chr15 77282954 77283088 -8412666 + Charlie8 DNA MER1_type 104 239 -2178 395 293 110 6 chr15 77283256 77283420 -8412334 + MIR SINE MIR 76 256 -6 652 236 61 7 chr15 77283616 77283764 -8411990 - MER5A DNA MER1_type 0 189 34 25 0 0 0 chr15 77284707 77284732 -8411022 + AT_rich Low_complexity Low_complexity 1 25 0 1389 174 176 20 chr15 77284908 77285317 -8410437 + LTR54B LTR ERV1 19 491 -7 342 0 0 0 chr15 77285350 77285388 -8410366 + (TTA)n Simple_repeat Simple_repeat 2 39 0 386 315 72 6 chr15 77285814 77285995 -8409759 - MLT1J LTR MaLR -312 199 7 502 328 86 20 chr15 77286780 77287024 -8408730 + MIR SINE MIR 3 262 0 180 289 178 22 chr15 77287119 77287209 -8408545 - L3 LINE CR1 -14 1563 1460 298 389 93 27 chr15 77287296 77287439 -8408315 - L3 LINE CR1 -251 1326 1194 6198 93 4 0 chr15 77287439 77287542 -8408212 - L1PA10 LINE L1 -1 6167 6066 2088 141 24 24 chr15 77287542 77287785 -8407969 - THE1C LTR MaLR 0 375 130 3450 199 20 81 chr15 77287785 77288816 -8406938 - LTR5 LTR ERVK 0 969 1 2088 141 24 24 chr15 77288816 77288947 -8406807 - THE1C LTR MaLR -244 131 1 6198 93 4 0 chr15 77288947 77289850 -8405904 - L1PA10 LINE L1 -102 6066 5162 298 389 93 27 chr15 77289850 77290038 -8405716 - L3 LINE CR1 -383 1194 973 522 233 6 44 chr15 77290439 77290598 -8405156 - L1MA10 LINE L1 -7 6327 6175 1937 129 48 58 chr15 77290602 77290981 -8404773 + THE1C LTR MaLR 1 375 0 386 274 0 32 chr15 77290996 77291120 -8404634 - L1ME LINE L1 -498 5737 5618 6249 249 60 38 chr15 77291125 77293706 -8402048 - L1ME LINE L1 -1188 5027 2389 882 172 66 10 chr15 77293730 77293928 -8401826 - L1MB7 LINE L1 -10 6174 5966 322 272 9 26 chr15 77293936 77294050 -8401704 - L1ME LINE L1 -5881 515 404 309 309 17 20 chr15 77295489 77295638 -8400116 - MIR3 SINE MIR -11 197 47 22 0 0 0 chr15 77295816 77295838 -8399916 + AT_rich Low_complexity Low_complexity 1 22 0 270 326 89 21 chr15 77296569 77296880 -8398874 - L1MC/D LINE L1 -881 5431 5328 1979 90 76 4 chr15 77297449 77297726 -8398028 + AluSg SINE Alu 5 301 -9 250 303 112 7 chr15 77297753 77297905 -8397849 + MIR SINE MIR 95 262 0 248 359 32 0 chr15 77298188 77298344 -8397410 - L1MC/D LINE L1 -1923 4223 4063 21 36 0 0 chr15 77298766 77298794 -8396960 + AT_rich Low_complexity Low_complexity 1 28 0 433 277 79 11 chr15 77298819 77298996 -8396758 - L1ME LINE L1 -457 5664 5476 238 138 39 85 chr15 77299473 77299603 -8396151 + (TA)n Simple_repeat Simple_repeat 2 125 0 385 130 72 3 chr15 77299618 77299964 -8395790 + (TA)n Simple_repeat Simple_repeat 1 369 0 29 28 0 0 chr15 77299964 77300000 -8395754 + AT_rich Low_complexity Low_complexity 1 36 0 341 148 0 0 chr15 77300011 77300065 -8395689 - L1MA3 LINE L1 -2155 3991 3938 4076 156 39 1 chr15 77300071 77300817 -8394937 + L1MA3 LINE L1 3982 4755 -1391 2865 119 12 35 chr15 77300817 77301320 -8394434 + L1MA3 LINE L1 5799 6305 0 667 179 123 0 chr15 77301365 77301544 -8394210 + L1ME1 LINE L1 4146 4346 -1800 714 80 10 0 chr15 77301560 77301660 -8394094 - L1PA6 LINE L1 -1832 4314 4214 8006 70 0 3 chr15 77301662 77303500 -8392254 + L1PA6 LINE L1 4314 6152 -2 2090 255 125 20 chr15 77303486 77305130 -8390624 + L1ME1 LINE L1 4349 6160 -6 240 297 31 31 chr15 77305329 77305457 -8390297 + L1MC2 LINE L1 4882 5009 -1137 800 255 22 25 chr15 77305665 77305943 -8389811 + L1MC2 LINE L1 5261 5537 -2271 3418 183 37 28 chr15 77305967 77306748 -8389006 + L1MC2 LINE L1 5541 6328 -16 431 263 131 23 chr15 77307666 77307841 -8387913 + MIR SINE MIR 58 251 -11 548 228 0 0 chr15 77307950 77308064 -8387690 + Tigger7 DNA MER2_type 4 117 -616 * 1430 128 24 54 chr15 77308062 77308358 -8387396 + Tigger7 DNA MER2_type 2238 2524 -63 206 296 0 0 chr15 77308797 77308851 -8386903 + GA-rich Low_complexity Low_complexity 3 56 0 349 262 202 39 chr15 77308936 77309066 -8386688 - MIR SINE MIR -62 146 3 722 166 0 58 chr15 77309634 77309773 -8385981 + FLAM_C SINE Alu 1 131 -2 2071 140 0 13 chr15 77309782 77309918 -8385836 + AluSx SINE Alu 1 137 -175 2105 126 3 0 chr15 77309918 77310212 -8385542 + AluSp SINE Alu 1 295 -18 2071 140 0 13 chr15 77310212 77310382 -8385372 + AluSx SINE Alu 137 303 -9 278 263 0 38 chr15 77311973 77312053 -8383701 + GA-rich Low_complexity Low_complexity 4 80 0 28 61 0 0 chr15 77312143 77312192 -8383562 + AT_rich Low_complexity Low_complexity 1 49 0 309 316 99 47 chr15 77312680 77312892 -8382862 + MIR SINE MIR 6 228 -34 289 211 0 0 chr15 77314494 77314546 -8381208 - MSTB LTR MaLR -64 362 311 2059 180 72 8 chr15 77315378 77315778 -8379976 - MSTB LTR MaLR 0 426 1 391 328 142 50 chr15 77315807 77316271 -8379483 - L2 LINE L2 -558 2756 2250 23 33 0 0 chr15 77316842 77316872 -8378882 + AT_rich Low_complexity Low_complexity 1 30 0 274 256 8 8 chr15 77316933 77317050 -8378704 + (TA)n Simple_repeat Simple_repeat 2 118 0 312 234 11 32 chr15 77318370 77318464 -8377290 - MER69 DNA AcHobo -1 2525 2434 493 146 62 42 chr15 77319380 77319488 -8376266 - MER53 DNA DNA -42 147 34 1641 205 87 6 chr15 77319488 77319854 -8375900 + MSTD LTR MaLR 1 396 0 493 146 62 42 chr15 77319854 77319889 -8375865 - MER53 DNA DNA -155 34 1 439 264 100 34 chr15 77320003 77320242 -8375512 + L1ME2 LINE L1 4841 5095 -1051 1960 171 3 3 chr15 77320299 77320608 -8375146 + AluJb SINE Alu 1 309 -3 964 283 43 36 chr15 77320686 77321106 -8374648 - LTR16A1 LTR ERVL -33 424 2 408 272 0 7 chr15 77321107 77321243 -8374511 + L1ME2 LINE L1 5139 5273 -873 1564 238 61 58 chr15 77321313 77321342 -8374412 + L1ME2 LINE L1 5461 5488 -676 1837 141 57 34 chr15 77321342 77321696 -8374058 - THE1B LTR MaLR -2 362 1 1564 238 61 58 chr15 77321696 77321740 -8374014 + L1ME2 LINE L1 5488 5530 -634 5438 85 67 28 chr15 77321740 77322531 -8373223 + LTR12 LTR ERV1 5 826 0 1564 238 61 58 chr15 77322531 77323149 -8372605 + L1ME2 LINE L1 5530 6155 -9 388 136 15 0 chr15 77324108 77324174 -8371580 + MLT2B3 LTR ERVL 1 67 -487 774 235 24 0 chr15 77324274 77324444 -8371310 + MLT2B3 LTR ERVL 75 248 -306 322 177 32 0 chr15 77324448 77324510 -8371244 + MER58 DNA MER1_type 2357 2420 0 22 0 0 0 chr15 77325435 77325457 -8370297 + AT_rich Low_complexity Low_complexity 1 22 0 480 334 103 20 chr15 77325746 77326392 -8369362 - L1MCc LINE L1 -816 6749 5906 600 281 68 54 chr15 77326432 77326569 -8369185 - L1MCc LINE L1 -1806 5759 5625 1643 201 7 10 chr15 77326569 77326858 -8368896 + AluJo SINE Alu 1 288 -24 600 281 68 54 chr15 77326858 77327297 -8368457 - L1MCc LINE L1 -1940 5625 5175 308 258 46 126 chr15 77327395 77327697 -8368057 - L1MCc LINE L1 -3000 4565 4288 262 240 0 0 chr15 77327780 77327830 -8367924 + MLT1F1 LTR MaLR 44 93 -500 538 207 0 0 chr15 77327862 77327983 -8367771 - L1MA6 LINE L1 0 6300 6180 1456 203 28 7 chr15 77328003 77328168 -8367586 - AluJb SINE Alu -15 297 122 351 0 0 0 chr15 77328168 77328207 -8367547 + (TG)n Simple_repeat Simple_repeat 2 40 0 1456 203 28 7 chr15 77328207 77328332 -8367422 - AluJb SINE Alu -190 122 1 1010 246 79 50 chr15 77328337 77328792 -8366962 + MLT1F1 LTR MaLR 100 567 0 1641 152 8 25 chr15 77328810 77329270 -8366484 - L1MCc LINE L1 -4418 3147 2609 2258 112 0 0 chr15 77329281 77329575 -8366179 + AluSg SINE Alu 1 294 -16 4322 207 22 5 chr15 77329584 77330319 -8365435 - L1MA1 LINE L1 0 6302 5556 21 0 0 0 chr15 77330356 77330377 -8365377 + AT_rich Low_complexity Low_complexity 1 21 0 2228 124 6 3 chr15 77330377 77330723 -8365031 - L1MA1 LINE L1 -4 6298 5952 11539 190 17 12 chr15 77330723 77332999 -8362755 - L1M4 LINE L1 -5262 2303 17 3541 126 56 18 chr15 77332999 77333739 -8362015 - L1MCc LINE L1 -4892 2155 1879 3260 167 119 37 chr15 77333733 77334513 -8361241 - L1MCc LINE L1 -5542 2023 1180 * 2301 82 24 0 chr15 77334620 77334913 -8360841 + AluSc SINE Alu 1 300 -9 2533 174 2 15 chr15 77334945 77335405 -8360349 - MER41D LTR ERV1 -103 454 1 3207 220 43 20 chr15 77335430 77336138 -8359616 + Charlie1 DNA MER1_type 1718 2460 -301 1884 146 4 0 chr15 77336138 77336439 -8359315 - AluSx SINE Alu 0 302 1 3207 220 43 20 chr15 77336439 77336748 -8359006 + Charlie1 DNA MER1_type 2460 2760 -1 331 261 0 11 chr15 77336748 77336840 -8358914 - MER103 DNA DNA -68 98 8 587 218 70 21 chr15 77337092 77337234 -8358520 + MER77 LTR ERV1 41 189 -416 942 284 63 36 chr15 77337294 77337706 -8358048 + MER77 LTR ERV1 177 599 -6 200 189 0 0 chr15 77337816 77337853 -8357901 + A-rich Low_complexity Low_complexity 5 41 0 21 0 0 0 chr15 77338322 77338343 -8357411 + AT_rich Low_complexity Low_complexity 1 21 0 190 227 23 23 chr15 77338914 77338958 -8356796 - L2 LINE L2 -10 3262 3219 21 0 0 0 chr15 77340074 77340095 -8355659 + AT_rich Low_complexity Low_complexity 1 21 0 741 211 0 0 chr15 77341046 77341179 -8354575 - FLAM_C SINE Alu 0 133 1 2224 92 3 0 chr15 77341238 77341551 -8354203 + AluSx SINE Alu 1 314 0 2170 111 0 40 chr15 77342061 77342386 -8353368 + AluSq SINE Alu 1 312 -1 1030 108 19 108 chr15 77342436 77342649 -8353105 - MER51A LTR ERV1 -440 194 1 353 303 30 0 chr15 77342822 77342975 -8352779 - LTR50 LTR ERVL -198 597 354 581 175 228 14 chr15 77343006 77343217 -8352537 - LTR50 LTR ERVL -537 258 3 303 71 0 0 chr15 77344400 77344442 -8351312 + (CA)n Simple_repeat Simple_repeat 1 42 0 1650 169 0 4 chr15 77344508 77344796 -8350958 - AluJb SINE Alu 0 310 24 429 198 0 0 chr15 77345671 77345752 -8350002 + Zaphod DNA AcHobo 3951 4031 0 297 128 0 0 chr15 77346023 77346070 -8349684 + (ATG)n Simple_repeat Simple_repeat 2 48 0 647 295 77 13 chr15 77346080 77346314 -8349440 - MIR SINE MIR -8 254 6 288 245 163 61 chr15 77346864 77347060 -8348694 + MIR SINE MIR 28 243 -19 1063 260 89 81 chr15 77347069 77347335 -8348419 + L2 LINE L2 2442 2704 -609 2403 145 12 2 chr15 77347335 77347734 -8348020 - MER57A LTR ERV1 0 403 1 1063 260 89 81 chr15 77347734 77348244 -8347510 + L2 LINE L2 2704 3219 -94 1963 237 100 8 chr15 77348244 77348834 -8346920 + LTR48B LTR ERV1 1 644 0 1063 260 89 81 chr15 77348834 77348930 -8346824 + L2 LINE L2 3219 3313 0 227 31 31 0 chr15 77349146 77349178 -8346576 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2095 146 28 8 chr15 77349201 77349558 -8346196 - THE1B LTR MaLR 0 364 1 684 146 36 36 chr15 77350065 77350202 -8345552 + LTR29 LTR ERV1 39 175 -447 21 36 0 0 chr15 77351982 77352010 -8343744 + AT_rich Low_complexity Low_complexity 1 28 0 497 291 33 26 chr15 77354198 77354349 -8341405 + MER5B DNA MER1_type 2 153 -25 465 260 72 64 chr15 77354471 77354706 -8341048 - MIR SINE MIR 0 262 26 2043 110 7 14 chr15 77354706 77355016 -8340738 - AluSx SINE Alu 0 311 4 1310 242 76 44 chr15 77355031 77355531 -8340223 - L1MD2 LINE L1 -13 6346 5831 1960 179 59 34 chr15 77355535 77355976 -8339778 - LTR47A LTR ERVL 0 452 1 1280 182 142 37 chr15 77355996 77356348 -8339406 + MSTD LTR MaLR 8 396 0 2603 171 71 2 chr15 77356353 77356982 -8338772 - L1MD2 LINE L1 -534 5825 5132 243 337 45 34 chr15 77357094 77357272 -8338482 + MIR SINE MIR 83 262 0 283 333 109 6 chr15 77357360 77357525 -8338229 - MIR SINE MIR -50 212 31 24 0 0 0 chr15 77357764 77357788 -8337966 + AT_rich Low_complexity Low_complexity 1 24 0 389 328 50 44 chr15 77358767 77358947 -8336807 + MER5A DNA MER1_type 8 188 -1 209 230 10 0 chr15 77359077 77359177 -8336577 + (TA)n Simple_repeat Simple_repeat 2 102 0 314 348 92 5 chr15 77360119 77360303 -8335451 + MIR SINE MIR 31 230 -32 431 333 132 12 chr15 77360337 77360664 -8335090 + L3 LINE CR1 1212 1577 0 24 0 0 0 chr15 77360818 77360842 -8334912 + AT_rich Low_complexity Low_complexity 1 24 0 1149 201 25 50 chr15 77362036 77362319 -8333435 + L1MD2 LINE L1 6064 6339 -20 290 293 118 84 chr15 77364618 77365058 -8330696 - L2 LINE L2 -1 3271 2817 2063 102 3 7 chr15 77365078 77365361 -8330393 + AluSc SINE Alu 26 307 -2 491 263 80 0 chr15 77366050 77366187 -8329567 + MIR SINE MIR 81 228 -34 814 274 5 5 chr15 77368278 77368482 -8327272 - MIR SINE MIR -57 205 2 197 323 15 15 chr15 77368505 77368570 -8327184 + L2 LINE L2 3203 3267 -5 439 337 136 17 chr15 77368819 77369421 -8326333 - L2 LINE L2 0 3313 2638 1860 179 21 13 chr15 77369441 77369894 -8325860 + MLT2B2 LTR ERVL 3 520 0 183 385 34 17 chr15 77369903 77370142 -8325612 - L2 LINE L2 -710 2604 2362 215 363 33 0 chr15 77370449 77370540 -8325214 + MIR SINE MIR 59 152 -110 180 77 0 0 chr15 77371452 77371478 -8324276 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 237 373 8 16 chr15 77371694 77371820 -8323934 - MIR SINE MIR -64 144 20 1515 271 132 41 chr15 77372007 77373140 -8322614 - HAL1 LINE L1 -66 2441 1206 286 250 0 0 chr15 77373204 77373288 -8322466 - L1ME2 LINE L1 -1 6163 6080 1290 178 130 3 chr15 77373290 77373583 -8322171 + MER44D DNA MER2_type 4 603 -6 566 193 155 25 chr15 77373615 77373776 -8321978 - L1ME2 LINE L1 -86 6078 5897 234 327 19 6 chr15 77373790 77373952 -8321802 - HAL1 LINE L1 -1384 1123 960 272 130 0 0 chr15 77374276 77374322 -8321432 - MLT2F LTR ERVL -2 661 616 285 186 8 0 chr15 77374380 77374446 -8321308 - MLT2C2 LTR ERVL -41 479 364 488 269 6 51 chr15 77374617 77374792 -8320962 - MLT1E3 LTR MaLR -404 220 54 2283 107 47 16 chr15 77375187 77375551 -8320203 + THE1C LTR MaLR 1 375 0 246 303 23 23 chr15 77376137 77376269 -8319485 + MLT1H LTR MaLR 47 178 -371 296 167 33 0 chr15 77376472 77376532 -8319222 + MLT1F1 LTR MaLR 490 551 -16 22 35 0 0 chr15 77376779 77376808 -8318946 + AT_rich Low_complexity Low_complexity 1 29 0 48 0 0 0 chr15 77376946 77376994 -8318760 + AT_rich Low_complexity Low_complexity 1 48 0 1477 214 8 8 chr15 77377000 77377266 -8318488 - AluJo SINE Alu -46 266 1 1596 198 57 67 chr15 77377395 77377992 -8317762 + Looper DNA T2_type 956 1546 -12 7461 142 22 25 chr15 77378264 77379568 -8316186 - HSMAR2 DNA Mariner -1 1301 1 238 301 14 0 chr15 77379717 77379790 -8315964 - MLT1L LTR MaLR -535 80 7 4857 273 45 47 chr15 77379887 77383464 -8312290 + L1MEc LINE L1 238 3758 -2457 2330 96 0 6 chr15 77383464 77383776 -8311978 + AluSg SINE Alu 1 310 0 4857 273 45 47 chr15 77383776 77384477 -8311277 + L1MEc LINE L1 3758 4459 -1756 27 0 0 0 chr15 77384749 77384776 -8310978 + AT_rich Low_complexity Low_complexity 1 27 0 305 270 0 0 chr15 77384873 77384947 -8310807 - MLT1L LTR MaLR -215 400 327 567 274 77 5 chr15 77385072 77385280 -8310474 - MLT1L LTR MaLR -63 552 330 2042 138 13 3 chr15 77386418 77386723 -8309031 + AluSx SINE Alu 1 308 -4 255 229 0 0 chr15 77387440 77387501 -8308253 + CT-rich Low_complexity Low_complexity 2 62 0 228 143 0 0 chr15 77391377 77391419 -8304335 + (TATG)n Simple_repeat Simple_repeat 2 43 0 190 333 30 107 chr15 77392518 77392686 -8303068 - MIR3 SINE MIR -24 184 30 474 331 48 0 chr15 77393397 77393563 -8302191 - MIR SINE MIR -86 176 3 2084 125 10 0 chr15 77394246 77394543 -8301211 - AluSx SINE Alu -12 300 1 183 222 0 0 chr15 77395571 77395607 -8300147 + L2 LINE L2 3026 3061 -252 186 277 77 15 chr15 77395688 77395753 -8300001 + L2 LINE L2 3240 3308 -5 1494 176 46 0 chr15 77395984 77396245 -8299509 + AluJb SINE Alu 11 283 -29 1295 79 0 0 chr15 77396345 77396510 -8299244 - AluSg SINE Alu -145 165 1 180 200 0 0 chr15 77396567 77396597 -8299157 + L2 LINE L2 3222 3251 -21 196 266 78 31 chr15 77397755 77397819 -8297935 - MIR SINE MIR -71 191 125 224 322 39 71 chr15 77399753 77399938 -8295816 + MIR SINE MIR 30 206 -56 21 36 0 0 chr15 77400802 77400830 -8294924 + AT_rich Low_complexity Low_complexity 1 28 0 214 259 19 0 chr15 77401020 77401074 -8294680 + (TG)n Simple_repeat Simple_repeat 2 56 0 192 125 0 0 chr15 77401511 77401543 -8294211 + (GA)n Simple_repeat Simple_repeat 1 32 0 354 273 41 16 chr15 77403569 77403690 -8292064 + L1MC/D LINE L1 5398 5521 -2287 211 178 44 0 chr15 77403800 77403845 -8291909 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 199 71 0 0 chr15 77403926 77403954 -8291800 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1755 142 0 51 chr15 77403954 77404249 -8291505 - AluSx SINE Alu -28 284 5 263 363 6 0 chr15 77404307 77404467 -8291287 - L1ME LINE L1 -334 5787 5627 381 305 14 14 chr15 77404560 77404701 -8291053 - L2 LINE L2 -252 3061 2921 813 94 0 0 chr15 77404745 77404862 -8290892 + LTR12 LTR ERV1 153 269 -445 321 234 11 0 chr15 77404872 77404966 -8290788 + LTR30 LTR ERV1 548 642 -80 2313 62 37 0 chr15 77404967 77405292 -8290462 + LTR12 LTR ERV1 377 713 -1 320 212 152 73 chr15 77405662 77405827 -8289927 - L1M4 LINE L1 -1194 4952 4775 22 35 0 0 chr15 77406464 77406493 -8289261 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 77409555 77409579 -8286175 + AT_rich Low_complexity Low_complexity 1 24 0 459 0 0 0 chr15 77411409 77411460 -8284294 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 77412045 77412069 -8283685 + AT_rich Low_complexity Low_complexity 1 24 0 213 121 0 0 chr15 77413555 77413588 -8282166 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 396 0 0 0 chr15 77414914 77414958 -8280796 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 318 37 28 chr15 77415314 77415421 -8280333 - L3 LINE CR1 -159 1418 1311 288 0 0 0 chr15 77415520 77415552 -8280202 + (CA)n Simple_repeat Simple_repeat 2 33 0 321 100 0 0 chr15 77415554 77415604 -8280150 + (TC)n Simple_repeat Simple_repeat 1 50 0 708 313 112 18 chr15 77415614 77416061 -8279693 - L3 LINE CR1 -354 1223 735 1046 195 0 0 chr15 77416119 77416293 -8279461 - AluJb SINE Alu -21 291 118 186 191 0 0 chr15 77417892 77417939 -8277815 + CT-rich Low_complexity Low_complexity 1 47 0 2530 50 0 7 chr15 77418904 77419207 -8276547 + AluY SINE Alu 1 301 -10 237 221 0 0 chr15 77419353 77419421 -8276333 + (CA)n Simple_repeat Simple_repeat 1 68 0 22 35 0 0 chr15 77419816 77419845 -8275909 + AT_rich Low_complexity Low_complexity 1 29 0 358 382 25 15 chr15 77419902 77420101 -8275653 + L1ME4a LINE L1 5520 5720 -401 344 323 58 49 chr15 77420234 77420457 -8275297 + L1ME4a LINE L1 5720 5944 -177 25 83 0 0 chr15 77420557 77420617 -8275137 + AT_rich Low_complexity Low_complexity 1 60 0 613 151 66 20 chr15 77421578 77421730 -8274024 + MER53 DNA DNA 9 167 -22 207 125 0 0 chr15 77422160 77422200 -8273554 + (TG)n Simple_repeat Simple_repeat 1 40 0 459 0 0 0 chr15 77422200 77422251 -8273503 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 844 201 25 13 chr15 77422349 77422508 -8273246 + AluJb SINE Alu 130 290 -22 220 278 93 19 chr15 77423271 77423379 -8272375 - MIR SINE MIR -61 201 86 27 62 0 0 chr15 77424051 77424099 -8271655 + AT_rich Low_complexity Low_complexity 1 48 0 180 253 0 0 chr15 77424819 77424894 -8270860 + (TAG)n Simple_repeat Simple_repeat 2 76 0 1560 204 25 40 chr15 77425521 77425917 -8269837 + MLT1B LTR MaLR 1 390 0 290 380 88 32 chr15 77426036 77426320 -8269434 + L2 LINE L2 2946 3245 -27 2257 86 0 3 chr15 77426795 77427123 -8268631 + AluY SINE Alu 1 311 0 1220 240 71 117 chr15 77427284 77427850 -8267904 + MLT1E LTR MaLR 51 590 -3 368 300 118 48 chr15 77428329 77428700 -8267054 - L2 LINE L2 -49 3264 2864 250 246 14 0 chr15 77428767 77428836 -8266918 + L1MC5 LINE L1 6693 6762 -1199 656 181 0 40 chr15 77428943 77429120 -8266634 + L1MC3 LINE L1 6928 7097 -688 258 297 11 0 chr15 77429122 77429213 -8266541 + MLT1F1 LTR MaLR 37 128 -439 1820 208 70 32 chr15 77429216 77429775 -8265979 + L1MC3 LINE L1 7205 7784 -1 2267 107 0 7 chr15 77429778 77430078 -8265676 + AluSg SINE Alu 1 298 -12 371 354 45 12 chr15 77430139 77430382 -8265372 - L2 LINE L2 -639 2675 2425 1680 282 81 25 chr15 77430399 77431492 -8264262 + L1MEc LINE L1 1287 2440 -3956 539 282 32 0 chr15 77431503 77431691 -8264063 + L1ME1 LINE L1 16 209 -6333 11360 169 25 9 chr15 77431691 77433747 -8262007 - L1M1 LINE L1 -5102 2463 375 3622 77 12 10 chr15 77433785 77434282 -8261472 + L1PA10 LINE L1 5666 6163 -5 22 35 0 0 chr15 77434283 77434312 -8261442 + AT_rich Low_complexity Low_complexity 1 29 0 2014 243 102 32 chr15 77434312 77435289 -8260465 + L1ME1 LINE L1 3270 4315 -2329 891 287 12 0 chr15 77435292 77435626 -8260128 - L1M4 LINE L1 -3414 2732 2395 1305 218 61 20 chr15 77435642 77436087 -8259667 + L1ME1 LINE L1 5088 5550 -1094 7147 216 192 6 chr15 77436088 77437091 -8258663 + L1PA15 LINE L1 2523 3339 -2807 2199 86 0 4 chr15 77437091 77437370 -8258384 + AluY SINE Alu 27 304 -7 7147 216 192 6 chr15 77437370 77438734 -8257020 + L1PA15 LINE L1 3339 5329 -817 3493 141 21 2 chr15 77438834 77439414 -8256340 + L1PA15 LINE L1 5572 6162 -3 1495 244 78 23 chr15 77439419 77440275 -8255479 + L1ME1 LINE L1 5541 6467 -197 22 0 0 0 chr15 77440289 77440311 -8255443 + AT_rich Low_complexity Low_complexity 1 22 0 632 226 0 12 chr15 77440377 77440541 -8255213 + L1MA10 LINE L1 6169 6330 -4 2333 93 0 0 chr15 77440554 77440843 -8254911 + AluSx SINE Alu 2 290 -22 21 0 0 0 chr15 77440843 77440864 -8254890 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr15 77440885 77440918 -8254836 + (ACATG)n Simple_repeat Simple_repeat 5 37 0 2310 77 3 0 chr15 77441030 77441316 -8254438 + AluSp SINE Alu 1 287 -26 1839 176 14 3 chr15 77444052 77444398 -8251356 - MLT1A1 LTR MaLR -15 350 1 2076 141 0 0 chr15 77444906 77445203 -8250551 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr15 77445429 77445455 -8250299 + AT_rich Low_complexity Low_complexity 1 26 0 1895 148 72 13 chr15 77446862 77447180 -8248574 - MER1B DNA MER1_type 0 337 1 304 283 169 12 chr15 77447314 77447480 -8248274 - MIR3 SINE MIR -15 193 2 350 261 0 63 chr15 77447728 77447839 -8247915 - MIR SINE MIR -11 251 148 855 199 230 50 chr15 77448175 77448319 -8247435 + MLT1A2 LTR MaLR 1 118 -256 198 0 0 0 chr15 77448319 77448341 -8247413 + (TC)n Simple_repeat Simple_repeat 2 23 0 855 199 230 50 chr15 77448341 77448513 -8247241 + MLT1A2 LTR MaLR 118 374 0 272 282 0 0 chr15 77448719 77448790 -8246964 + MIR SINE MIR 160 230 -32 272 216 20 0 chr15 77448907 77448958 -8246796 + MIR SINE MIR 92 143 -65 483 90 56 0 chr15 77450027 77450116 -8245638 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 292 299 180 31 chr15 77450737 77451092 -8244662 + L2 LINE L2 2242 2649 -665 198 375 48 48 chr15 77451462 77451566 -8244188 + L2 LINE L2 3210 3313 0 338 228 89 57 chr15 77452399 77452522 -8243232 + MIR SINE MIR 17 143 -119 398 226 70 43 chr15 77454197 77454312 -8241442 - MIR SINE MIR -139 123 6 226 325 49 68 chr15 77456450 77456613 -8239141 - MIR SINE MIR -70 192 33 251 139 42 42 chr15 77457025 77457097 -8238657 + (TA)n Simple_repeat Simple_repeat 1 72 0 * 355 196 27 71 chr15 77457066 77457250 -8238504 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 23 33 0 0 chr15 77457394 77457424 -8238330 + AT_rich Low_complexity Low_complexity 1 30 0 192 333 26 13 chr15 77457576 77457654 -8238100 + MIR SINE MIR 48 126 -82 482 244 94 31 chr15 77457688 77457848 -8237906 - MIR SINE MIR -52 210 41 207 354 13 0 chr15 77457868 77457947 -8237807 + MIR SINE MIR 178 257 -5 429 295 124 5 chr15 77461833 77462026 -8233728 - MIR SINE MIR -6 256 41 22 35 0 0 chr15 77462042 77462071 -8233683 + AT_rich Low_complexity Low_complexity 1 29 0 290 336 123 23 chr15 77462246 77462466 -8233288 - MIR SINE MIR -7 255 14 438 20 0 0 chr15 77463270 77463321 -8232433 + (TC)n Simple_repeat Simple_repeat 1 51 0 210 71 0 0 chr15 77463461 77463489 -8232265 + (A)n Simple_repeat Simple_repeat 1 28 0 481 259 0 48 chr15 77464030 77464177 -8231577 + MLT1E LTR MaLR 16 155 -438 797 195 13 69 chr15 77464270 77464501 -8231253 - MLT1F1 LTR MaLR -346 221 4 305 313 18 0 chr15 77467068 77467180 -8228574 - L2 LINE L2 -2 3270 3157 212 239 43 144 chr15 77467444 77467632 -8228122 - L2 LINE L2 -27 3286 3118 314 206 55 14 chr15 77467667 77467740 -8228014 + MIR3 SINE MIR 104 179 -29 180 361 34 59 chr15 77467995 77468114 -8227640 - MIR SINE MIR -67 141 26 835 164 0 0 chr15 77468384 77468518 -8227236 + FLAM_C SINE Alu 10 143 0 1050 224 68 45 chr15 77469782 77469941 -8225813 + MLT1C LTR MaLR 34 188 -279 1629 175 4 0 chr15 77469941 77470209 -8225545 + AluJb SINE Alu 5 273 -39 1050 224 68 45 chr15 77470209 77470473 -8225281 + MLT1C LTR MaLR 188 467 0 226 243 95 40 chr15 77470579 77470727 -8225027 + MLT1F1 LTR MaLR 377 532 -35 1657 227 33 24 chr15 77471076 77471529 -8224225 - MLT1D LTR MaLR 0 505 49 270 220 0 0 chr15 77471583 77471633 -8224121 - MLT1D LTR MaLR -455 50 1 187 263 0 0 chr15 77471642 77471680 -8224074 - L2 LINE L2 -19 3253 3216 27 29 0 0 chr15 77471684 77471718 -8224036 + AT_rich Low_complexity Low_complexity 1 34 0 2954 185 26 0 chr15 77472090 77472664 -8223090 - L1MB1 LINE L1 -2 6166 5578 1202 87 43 5 chr15 77472684 77472869 -8222885 - MER30 DNA MER1_type -38 192 1 1478 193 21 16 chr15 77472871 77473358 -8222396 - L1MB1 LINE L1 -600 5583 5093 327 289 58 8 chr15 77473381 77473502 -8222252 - MIR SINE MIR -67 195 69 1316 259 92 25 chr15 77474336 77474866 -8220888 + MLT2F LTR ERVL 3 621 -42 237 65 0 0 chr15 77474866 77474897 -8220857 + (TG)n Simple_repeat Simple_repeat 2 32 0 1316 259 92 25 chr15 77474897 77474939 -8220815 + MLT2F LTR ERVL 621 659 -4 25 51 0 0 chr15 77474961 77475000 -8220754 + AT_rich Low_complexity Low_complexity 1 39 0 287 285 122 0 chr15 77475004 77475127 -8220627 - MIR SINE MIR 0 262 125 195 42 0 0 chr15 77476355 77476379 -8219375 + (TC)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr15 77476824 77476855 -8218899 + AT_rich Low_complexity Low_complexity 1 31 0 278 330 9 65 chr15 77478584 77478752 -8217002 - MER5A DNA MER1_type 0 189 18 243 375 104 14 chr15 77478847 77478991 -8216763 - MIR3 SINE MIR -14 194 38 1400 171 59 21 chr15 77479096 77479352 -8216402 + MER7A DNA MER2_type 51 319 -2719 2373 160 44 10 chr15 77479352 77479764 -8215990 - MSTB LTR MaLR 0 426 1 1400 171 59 21 chr15 77479764 77479793 -8215961 + MER7A DNA MER2_type 319 345 -1 5427 184 35 22 chr15 77480414 77482289 -8213465 - L1MC1 LINE L1 -5 6608 4701 1826 144 47 11 chr15 77482493 77482771 -8212983 + AluJb SINE Alu 6 293 -19 192 77 0 0 chr15 77482808 77482834 -8212920 + (TA)n Simple_repeat Simple_repeat 1 26 0 293 250 29 0 chr15 77482859 77482927 -8212827 + MIR SINE MIR 117 186 -76 828 291 6 69 chr15 77483149 77483510 -8212244 + MLT1J LTR MaLR 108 445 -66 396 288 34 8 chr15 77484093 77484211 -8211543 + MIR SINE MIR 11 131 -131 2468 111 37 5 chr15 77484656 77485214 -8210540 + L1P4 LINE L1 5105 5679 -484 2193 120 0 10 chr15 77485902 77486203 -8209551 + AluSx SINE Alu 1 298 -14 4354 238 47 61 chr15 77486829 77488046 -8207708 - L1MC1 LINE L1 -1998 4428 3195 3651 157 34 11 chr15 77488046 77488753 -8207001 + L1MA8 LINE L1 5552 6274 -17 764 11 0 0 chr15 77488753 77488843 -8206911 - AluY SINE Alu -15 296 207 4354 238 47 61 chr15 77488843 77489801 -8205953 - L1MC1 LINE L1 -3229 3197 2204 342 141 188 0 chr15 77489798 77489883 -8205871 + L1MCa LINE L1 1966 2066 -4360 * 1851 85 0 8 chr15 77489984 77490230 -8205524 + AluSc SINE Alu 53 296 -13 410 265 47 63 chr15 77490386 77490726 -8205028 - MLT1L LTR MaLR -217 398 18 240 177 97 0 chr15 77490964 77491026 -8204728 - L1MDa LINE L1 -3945 2595 2528 1471 162 14 91 chr15 77491043 77491256 -8204498 + MLT1A1 LTR MaLR 1 229 -136 1555 193 31 88 chr15 77491256 77491712 -8204042 + MSTB1 LTR MaLR 1 430 -2 1897 170 0 0 chr15 77491714 77492008 -8203746 + AluJb SINE Alu 3 296 -16 1471 162 14 91 chr15 77492008 77492176 -8203578 + MLT1A1 LTR MaLR 230 365 0 483 237 90 45 chr15 77492179 77492356 -8203398 - L1MDa LINE L1 -4020 2520 2336 369 192 0 0 chr15 77492484 77492562 -8203192 + L1MC3 LINE L1 7032 7109 -676 1890 182 13 8 chr15 77492612 77492996 -8202758 + L1MD3 LINE L1 7447 7832 -163 638 105 65 16 chr15 77493000 77493124 -8202630 - THE1B LTR MaLR -1 363 234 796 50 0 0 chr15 77493837 77493937 -8201817 - L1PA5 LINE L1 0 6154 6055 2396 167 78 65 chr15 77494564 77495168 -8200586 - LTR9 LTR ERV1 0 612 1 421 250 29 0 chr15 77496318 77496422 -8199332 - MER81 DNA DNA -6 108 2 881 240 21 17 chr15 77496607 77496840 -8198914 - MLT1G LTR MaLR -356 234 1 215 220 20 20 chr15 77496840 77496890 -8198864 - MIR SINE MIR -107 155 106 256 212 81 61 chr15 77497051 77497150 -8198604 + L2 LINE L2 2419 2519 -795 432 0 0 0 chr15 77498407 77498455 -8197299 + (CA)n Simple_repeat Simple_repeat 2 49 0 282 350 89 54 chr15 77498457 77498863 -8196891 + L2 LINE L2 2842 3261 -11 252 235 35 0 chr15 77500212 77500310 -8195444 + MLT1J LTR MaLR 95 260 -339 698 199 172 5 chr15 77501138 77501324 -8194430 + MER20 DNA MER1_type 3 219 0 347 310 61 61 chr15 77504198 77504411 -8191343 - MLT1J LTR MaLR -264 247 35 472 273 116 61 chr15 77504821 77505375 -8190379 + L1ME LINE L1 4287 4870 -1276 1808 100 8 0 chr15 77505428 77505667 -8190087 + L1PA11 LINE L1 5933 6173 -1 354 298 68 76 chr15 77505679 77505892 -8189862 + L1ME LINE L1 5209 5427 -694 2205 117 0 13 chr15 77505892 77506208 -8189546 + AluSx SINE Alu 1 312 0 354 298 68 76 chr15 77506208 77506333 -8189421 + L1ME LINE L1 5427 5551 -570 2088 136 7 0 chr15 77506460 77506762 -8188992 - AluSx SINE Alu -3 309 6 200 180 20 40 chr15 77508081 77508131 -8187623 + CT-rich Low_complexity Low_complexity 5 53 0 683 215 25 0 chr15 77509019 77509177 -8186577 - L1MD3 LINE L1 0 7995 7834 1153 164 16 0 chr15 77509181 77509364 -8186390 + THE1B LTR MaLR 1 186 -178 341 323 24 49 chr15 77509624 77509788 -8185966 - MIR SINE MIR -55 207 48 187 326 74 47 chr15 77510428 77510618 -8185136 - L2 LINE L2 -430 2884 2690 412 275 148 31 chr15 77512699 77513382 -8182372 + L1ME2 LINE L1 2745 3507 -2639 421 339 79 8 chr15 77513433 77513687 -8182067 + L1ME2 LINE L1 3580 3851 -2295 25 0 0 0 chr15 77513737 77513762 -8181992 + AT_rich Low_complexity Low_complexity 1 25 0 301 312 26 19 chr15 77513798 77513952 -8181802 + L1ME2 LINE L1 4016 4170 -1976 542 272 110 21 chr15 77514009 77514200 -8181554 + MER58A DNA MER1_type 7 214 -10 336 274 0 20 chr15 77514230 77514332 -8181422 + L1ME2 LINE L1 4245 4344 -1802 268 331 6 6 chr15 77514625 77514782 -8180972 + L1ME2 LINE L1 4674 4830 -1316 810 193 39 0 chr15 77515581 77515762 -8179992 - MER53 DNA DNA 0 189 2 370 271 171 14 chr15 77516255 77516395 -8179359 + MER96 DNA MER1_type? 14 175 0 2159 196 75 9 chr15 77516631 77517069 -8178685 - MLT1C LTR MaLR 0 467 1 520 184 55 9 chr15 77517742 77517851 -8177903 + MIR SINE MIR 80 193 -69 1476 229 60 58 chr15 77518759 77518990 -8176764 + L1ME2 LINE L1 5582 5811 -353 2090 125 0 0 chr15 77518990 77519287 -8176467 + AluSx SINE Alu 1 297 -15 1476 229 60 58 chr15 77519287 77519589 -8176165 + L1ME2 LINE L1 5811 6116 -48 348 312 216 0 chr15 77520203 77520421 -8175333 - L2 LINE L2 -2 3311 3047 323 298 47 77 chr15 77521970 77522205 -8173549 + L1M4 LINE L1 1123 1350 -5499 197 119 24 0 chr15 77522755 77522797 -8172957 + CT-rich Low_complexity Low_complexity 3 45 0 299 243 13 33 chr15 77524021 77524123 -8171631 + MIR SINE MIR 37 139 -69 249 180 0 0 chr15 77525921 77525971 -8169783 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 1383 190 78 11 chr15 77526074 77526343 -8169411 + AluJo SINE Alu 1 287 -25 194 222 19 0 chr15 77526975 77527029 -8168725 + CT-rich Low_complexity Low_complexity 3 57 0 25 0 0 0 chr15 77528209 77528234 -8167520 + AT_rich Low_complexity Low_complexity 1 25 0 239 301 58 29 chr15 77528501 77528604 -8167150 - L2 LINE L2 -264 3008 2903 1731 169 0 25 chr15 77528704 77528988 -8166766 + AluJo SINE Alu 1 277 -35 361 337 49 16 chr15 77528998 77529182 -8166572 - L2 LINE L2 -614 2700 2511 233 246 64 73 chr15 77529996 77530106 -8165648 + L1ME LINE L1 5715 5823 -298 289 209 38 38 chr15 77530160 77530265 -8165489 + HAL1b LINE L1 697 801 -547 429 278 100 33 chr15 77530422 77530692 -8165062 + L1M4 LINE L1 3705 3992 -2856 2189 114 0 3 chr15 77530850 77531147 -8164607 - AluSx SINE Alu -16 296 1 959 267 13 22 chr15 77531253 77531485 -8164269 + MIR SINE MIR 29 258 -4 234 176 44 0 chr15 77531685 77531753 -8164001 + (TA)n Simple_repeat Simple_repeat 1 71 0 1126 87 31 0 chr15 77531901 77532101 -8163653 - AluY SINE Alu 0 322 118 520 270 41 85 chr15 77532219 77532537 -8163217 - L1MC4a LINE L1 -161 5960 5657 2149 102 11 0 chr15 77532647 77532932 -8162822 - AluSx SINE Alu -24 288 1 185 243 129 64 chr15 77533491 77533631 -8162123 + L2 LINE L2 3153 3301 -12 3159 210 57 47 chr15 77533688 77534355 -8161399 - L1ME1 LINE L1 -19 6147 5467 234 91 0 0 chr15 77534355 77534388 -8161366 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3159 210 57 47 chr15 77534388 77534601 -8161153 - L1ME1 LINE L1 -699 5467 5258 2140 136 0 0 chr15 77537365 77537667 -8158087 + AluSx SINE Alu 1 302 -10 2171 199 25 0 chr15 77538558 77538960 -8156794 - L1MB5 LINE L1 -8 6166 5755 1865 246 121 19 chr15 77539405 77540287 -8155467 + Zaphod DNA AcHobo 1 989 -3042 340 247 95 6 chr15 77540305 77540463 -8155291 + Zaphod DNA AcHobo 3627 3798 -233 200 284 28 92 chr15 77540573 77540613 -8155141 + MIR SINE MIR 123 164 -98 2078 136 27 0 chr15 77540613 77540908 -8154846 + AluSx SINE Alu 1 303 -9 200 284 28 92 chr15 77540908 77541008 -8154746 + MIR SINE MIR 164 254 -8 2193 125 23 0 chr15 77541748 77542053 -8153701 + AluSq SINE Alu 1 312 -1 2819 99 3 3 chr15 77542204 77542559 -8153195 + THE1A LTR MaLR 1 355 0 11803 108 14 1 chr15 77542560 77544119 -8151635 + THE1A-int LTR MaLR 2 1580 0 2824 80 14 3 chr15 77544119 77544470 -8151284 + THE1A LTR MaLR 1 355 0 210 71 0 0 chr15 77544480 77544508 -8151246 + (TG)n Simple_repeat Simple_repeat 1 28 0 451 223 78 28 chr15 77544743 77544966 -8150788 - L1MB5 LINE L1 -747 5399 5221 221 326 149 28 chr15 77545425 77545606 -8150148 - MIR SINE MIR -57 205 3 255 341 22 0 chr15 77546284 77546375 -8149379 - MIR3 SINE MIR -30 178 86 201 74 0 0 chr15 77546876 77546903 -8148851 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 3650 123 24 86 chr15 77547489 77548242 -8147512 - L1MCa LINE L1 -4794 1632 927 418 126 31 255 chr15 77548243 77548484 -8147270 - Ricksha DNA DNA -1 3253 3088 2235 80 3 51 chr15 77548484 77548796 -8146958 + AluY SINE Alu 1 297 -14 418 126 31 255 chr15 77548796 77548848 -8146906 - Ricksha DNA DNA -166 3088 3026 556 192 39 19 chr15 77548863 77549019 -8146735 - Ricksha DNA DNA -164 3087 2929 4013 127 17 0 chr15 77549064 77549657 -8146097 - L1PA13 LINE L1 -1 6162 5560 5090 155 33 34 chr15 77549662 77550959 -8144795 + L1PA13 LINE L1 4278 5564 -604 2206 94 0 7 chr15 77551416 77551733 -8144021 + AluY SINE Alu 1 315 0 2752 106 14 3 chr15 77551930 77552290 -8143464 - THE1B LTR MaLR 0 364 1 200 219 0 0 chr15 77552495 77552536 -8143218 + L2 LINE L2 1366 1406 -1908 268 250 56 37 chr15 77552802 77552910 -8142844 + L2 LINE L2 1885 1994 -1320 968 225 118 21 chr15 77552965 77553339 -8142415 - L1MC5 LINE L1 -45 7916 7507 583 217 0 0 chr15 77553372 77553478 -8142276 + FLAM_A SINE Alu 4 109 -33 30 0 0 0 chr15 77553500 77553530 -8142224 + AT_rich Low_complexity Low_complexity 1 30 0 277 169 85 0 chr15 77553532 77553591 -8142163 - L1MC5 LINE L1 -496 7465 7402 213 215 62 0 chr15 77554528 77554593 -8141161 - MIR SINE MIR -95 167 99 396 286 41 94 chr15 77555363 77555608 -8140146 + MIR SINE MIR 28 259 -3 2202 124 0 0 chr15 77555661 77555960 -8139794 + AluSx SINE Alu 1 299 -13 268 315 118 28 chr15 77556024 77556202 -8139552 - MIR3 SINE MIR -11 197 4 310 337 20 0 chr15 77556719 77556817 -8138937 + L2 LINE L2 3203 3302 -11 484 319 145 22 chr15 77557761 77558168 -8137586 - L2 LINE L2 -6 3307 2851 1442 125 5 0 chr15 77558418 77558618 -8137136 + AluSx SINE Alu 1 201 -111 375 281 22 34 chr15 77559897 77560075 -8135679 + MARNA DNA Mariner 137 312 -274 547 295 135 5 chr15 77560254 77560461 -8135293 + LTR41 LTR ERVL 62 295 -478 291 299 47 8 chr15 77560466 77560593 -8135161 + L1ME3A LINE L1 5731 5862 -308 208 275 25 0 chr15 77560625 77560705 -8135049 + (TA)n Simple_repeat Simple_repeat 2 83 0 361 139 89 0 chr15 77560738 77560817 -8134937 - L1MD1 LINE L1 -1 6241 6156 8583 146 24 65 chr15 77560833 77562459 -8133295 - Tigger1 DNA MER2_type -856 1562 3 259 186 103 10 chr15 77562463 77562560 -8133194 - L1ME LINE L1 -3770 2310 2205 * 2228 277 38 79 chr15 77562537 77563697 -8132057 - L1ME LINE L1 -4984 1086 6 288 316 66 37 chr15 77563722 77563966 -8131788 + MER46C DNA MER2_type 80 330 -8 24 32 0 0 chr15 77564423 77564454 -8131300 + AT_rich Low_complexity Low_complexity 1 31 0 399 302 41 47 chr15 77564507 77564676 -8131078 - MIR SINE MIR -79 183 16 251 365 51 13 chr15 77564710 77564866 -8130888 - MIR SINE MIR -94 168 7 302 332 60 56 chr15 77566886 77567083 -8128671 + HAL1 LINE L1 848 1048 -1459 2360 89 3 0 chr15 77567083 77567386 -8128368 - AluY SINE Alu -7 304 1 302 332 60 56 chr15 77567386 77567420 -8128334 + HAL1 LINE L1 1048 1080 -1427 304 379 46 29 chr15 77567565 77567913 -8127841 + HAL1 LINE L1 1315 1668 -839 22 56 0 0 chr15 77567917 77567953 -8127801 + AT_rich Low_complexity Low_complexity 1 36 0 445 211 11 0 chr15 77568383 77568478 -8127276 + L1ME3A LINE L1 6062 6157 -13 2010 134 58 30 chr15 77568623 77568988 -8126766 - THE1C LTR MaLR 0 375 1 4288 144 6 10 chr15 77568988 77569663 -8126091 - THE1C-int LTR MaLR 0 1580 909 304 271 142 32 chr15 77569768 77569986 -8125768 - L1MC4 LINE L1 -1036 7006 6765 625 268 164 31 chr15 77570472 77570826 -8124928 - L2 LINE L2 -1 3312 2912 3105 96 89 0 chr15 77571556 77572015 -8123739 - THE1C-int LTR MaLR -1080 500 1 2090 105 30 95 chr15 77572015 77572251 -8123503 - THE1C LTR MaLR 0 375 174 2268 102 7 3 chr15 77572251 77572554 -8123200 + AluSx SINE Alu 1 304 -8 2090 105 30 95 chr15 77572554 77572718 -8123036 - THE1C LTR MaLR -201 174 1 340 254 30 37 chr15 77572969 77573103 -8122651 - LTR33A LTR ERVL -10 513 381 321 266 60 101 chr15 77573194 77573412 -8122342 - LTR33A LTR ERVL -297 224 16 363 214 145 25 chr15 77574011 77574170 -8121584 - LTR50 LTR ERVL -3 792 615 * 437 263 308 33 chr15 77574166 77574497 -8121257 - LTR50 LTR ERVL -323 472 51 26 50 0 0 chr15 77575545 77575585 -8120169 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr15 77581150 77581178 -8114576 + AT_rich Low_complexity Low_complexity 1 28 0 1630 242 65 42 chr15 77582199 77582720 -8113034 - L1MD2 LINE L1 -16 6343 5811 228 35 0 0 chr15 77584432 77584461 -8111293 + (TC)n Simple_repeat Simple_repeat 1 29 0 426 309 22 22 chr15 77584639 77584817 -8110937 - MARNA DNA Mariner -144 442 265 1984 136 0 40 chr15 77585205 77585529 -8110225 - AluSx SINE Alu -1 311 1 23 0 0 0 chr15 77587259 77587282 -8108472 + AT_rich Low_complexity Low_complexity 1 23 0 524 320 131 5 chr15 77587286 77587661 -8108093 - L1ME3A LINE L1 -235 5935 5514 548 286 103 23 chr15 77587713 77587975 -8107779 + L1MCa LINE L1 1572 1854 -4572 890 186 76 0 chr15 77587984 77588156 -8107598 + MSTD LTR MaLR 212 396 0 21 0 0 0 chr15 77588287 77588308 -8107446 + AT_rich Low_complexity Low_complexity 1 21 0 2134 149 0 0 chr15 77588325 77588634 -8107120 + AluJb SINE Alu 1 309 -3 240 272 58 78 chr15 77589650 77589841 -8105913 - MLT1H LTR MaLR 0 549 363 1073 238 113 31 chr15 77589932 77590011 -8105743 + MLT1F LTR MaLR 49 120 -422 2058 158 3 0 chr15 77590011 77590322 -8105432 + AluSx SINE Alu 1 312 0 1073 238 113 31 chr15 77590322 77590677 -8105077 + MLT1F LTR MaLR 120 513 -29 366 287 0 0 chr15 77590709 77590796 -8104958 - MLT1H LTR MaLR -215 334 248 286 154 39 0 chr15 77590800 77590852 -8104902 - Ricksha DNA DNA -1137 909 856 1733 185 102 11 chr15 77590853 77591216 -8104538 + MSTD LTR MaLR 1 396 0 2384 231 34 24 chr15 77591241 77591773 -8103981 - MLT2B3 LTR ERVL -17 537 1 716 259 85 5 chr15 77591774 77591998 -8103756 - MLT1H LTR MaLR -307 242 1 306 212 62 71 chr15 77592215 77592328 -8103426 + LTR67 LTR ERVL 436 547 -10 735 288 13 13 chr15 77593182 77593415 -8102339 + MIR SINE MIR 12 244 -18 210 239 90 15 chr15 77594260 77594327 -8101427 + MER5A DNA MER1_type 112 183 -6 1715 35 0 5 chr15 77594927 77595161 -8100593 + L1PA2 LINE L1 5958 6155 0 225 0 0 0 chr15 77595171 77595196 -8100558 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2720 26 0 0 chr15 77595203 77595512 -8100242 + AluY SINE Alu 1 309 -2 248 156 0 0 chr15 77595911 77595956 -8099798 - MER5B DNA MER1_type -133 45 1 3240 111 7 2 chr15 77597322 77597780 -8097974 - L1PA12 LINE L1 -52 6116 5657 190 191 264 45 chr15 77598040 77598150 -8097604 - MIR SINE MIR -11 251 118 2061 171 18 31 chr15 77598162 77598553 -8097201 - MLT1B LTR MaLR 0 390 5 336 305 23 23 chr15 77598557 77598685 -8097069 - MER94 DNA DNA -6 128 1 249 240 83 42 chr15 77599516 77599612 -8096142 - MIR SINE MIR -1 261 162 774 142 35 0 chr15 77599863 77599976 -8095778 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr15 77599976 77599998 -8095756 + AT_rich Low_complexity Low_complexity 1 22 0 470 178 44 0 chr15 77600101 77600191 -8095563 + MER103 DNA DNA 56 149 -17 2335 165 136 137 chr15 77600448 77601625 -8094129 + pTR5 LTR ERV1 743 2425 -13 184 240 80 0 chr15 77601785 77601835 -8093919 + L2 LINE L2 3184 3237 -76 494 266 0 0 chr15 77602066 77602175 -8093579 - MER81 DNA DNA -5 109 1 216 158 40 0 chr15 77603430 77603506 -8092248 + (TA)n Simple_repeat Simple_repeat 1 79 0 2538 153 36 14 chr15 77604511 77604930 -8090824 - MSTA LTR MaLR 0 428 1 420 363 6 28 chr15 77604952 77605134 -8090620 + MIR3 SINE MIR 28 205 -3 1637 100 10 110 chr15 77605465 77605756 -8089998 + AluSx SINE Alu 23 309 0 226 0 0 0 chr15 77605756 77605781 -8089973 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 21 36 0 0 chr15 77605781 77605809 -8089945 + AT_rich Low_complexity Low_complexity 1 28 0 304 118 29 0 chr15 77605824 77605892 -8089862 + (TA)n Simple_repeat Simple_repeat 1 70 0 512 301 63 60 chr15 77605923 77606255 -8089499 + L1ME4a LINE L1 5522 5854 -267 1818 119 11 28 chr15 77607164 77607450 -8088304 + THE1B LTR MaLR 1 281 -83 219 236 79 129 chr15 77608096 77608236 -8087518 - L2 LINE L2 -19 3253 3121 196 305 17 0 chr15 77608320 77608379 -8087375 - MIR SINE MIR 0 262 203 413 299 57 47 chr15 77608758 77608969 -8086785 - MIR SINE MIR -34 228 16 33 43 0 0 chr15 77608987 77609034 -8086720 + AT_rich Low_complexity Low_complexity 1 47 0 214 287 138 63 chr15 77610603 77610777 -8084977 + L2 LINE L2 3118 3304 -9 243 288 75 47 chr15 77610778 77610964 -8084790 + L1M1 LINE L1 5620 5816 -346 301 329 101 20 chr15 77611509 77611658 -8084096 + MIR3 SINE MIR 33 193 -15 304 274 30 61 chr15 77613154 77613318 -8082436 - MER117 DNA MER1_type -33 164 6 1692 213 36 9 chr15 77614861 77615308 -8080446 - MER89 LTR ERV1 0 559 1 446 271 90 60 chr15 77615405 77615851 -8079903 - L1ME4a LINE L1 0 6121 5663 2229 128 0 0 chr15 77615985 77616291 -8079463 - AluSx SINE Alu -6 306 1 492 202 57 8 chr15 77616895 77617019 -8078735 - MER69A DNA AcHobo -2 175 46 395 289 50 38 chr15 77617037 77617196 -8078558 - MER5A DNA MER1_type -26 163 3 302 231 92 54 chr15 77617256 77617386 -8078368 - MER69 DNA AcHobo -1077 149 15 555 285 47 6 chr15 77617543 77617715 -8078039 + MIR SINE MIR 7 185 -77 572 325 48 9 chr15 77617997 77618225 -8077529 + MIR SINE MIR 15 251 -11 185 297 16 109 chr15 77619625 77619753 -8076001 - L2 LINE L2 -211 3061 2946 1961 147 0 0 chr15 77619782 77620068 -8075686 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr15 77620074 77620118 -8075636 + (TG)n Simple_repeat Simple_repeat 1 44 0 372 178 0 0 chr15 77620121 77620194 -8075560 + (TA)n Simple_repeat Simple_repeat 2 74 0 3079 159 20 18 chr15 77620225 77620783 -8074971 + L1MB3 LINE L1 5625 6183 0 276 53 0 0 chr15 77622505 77622543 -8073211 + (CA)n Simple_repeat Simple_repeat 2 39 0 834 133 0 0 chr15 77622555 77622728 -8073026 + (CA)n Simple_repeat Simple_repeat 2 174 0 486 0 0 0 chr15 77623260 77623314 -8072440 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr15 77623410 77623432 -8072322 + AT_rich Low_complexity Low_complexity 1 22 0 420 20 0 0 chr15 77624428 77624477 -8071277 + (CA)n Simple_repeat Simple_repeat 1 49 0 598 188 0 0 chr15 77625781 77625877 -8069877 - FRAM SINE Alu -79 97 2 21 0 0 0 chr15 77625951 77625972 -8069782 + AT_rich Low_complexity Low_complexity 1 21 0 448 281 95 55 chr15 77626439 77626823 -8068931 - L1MC/D LINE L1 -385 5785 5488 461 271 73 0 chr15 77626837 77626916 -8068838 - L1MEd LINE L1 -5948 171 99 252 43 65 0 chr15 77626916 77626962 -8068792 + (TA)n Simple_repeat Simple_repeat 1 49 0 461 271 73 0 chr15 77626962 77627033 -8068721 - L1MEd LINE L1 -6020 99 10 238 219 57 124 chr15 77627266 77627371 -8068383 - LTR33A LTR ERVL -339 184 87 574 255 70 0 chr15 77627472 77627629 -8068125 - HAL1 LINE L1 -1038 1469 1302 34 24 0 0 chr15 77627701 77627742 -8068012 + AT_rich Low_complexity Low_complexity 1 41 0 1380 226 33 26 chr15 77628010 77628399 -8067355 + HAL1 LINE L1 1456 1847 -660 953 220 6 0 chr15 77628462 77628644 -8067110 + MER58A DNA MER1_type 42 224 0 1024 265 71 41 chr15 77628644 77629134 -8066620 + HAL1 LINE L1 1848 2352 -155 542 279 86 20 chr15 77629680 77629877 -8065877 - L2 LINE L2 0 3313 3104 3804 91 21 48 chr15 77632505 77633068 -8062686 - L1PA10 LINE L1 0 6168 5621 329 68 0 0 chr15 77633068 77633112 -8062642 + L1P4 LINE L1 5644 5687 -481 2407 180 31 6 chr15 77634173 77634682 -8061072 + L1M4 LINE L1 5222 5741 -443 1382 221 70 25 chr15 77634682 77635039 -8060715 - MLT1A2 LTR MaLR 0 374 2 4128 208 58 105 chr15 77635043 77636469 -8059285 - MLT1-int LTR MaLR -6 1574 5 8129 170 20 12 chr15 77636471 77637860 -8057894 + ERVL-B1 LTR ERVL 4358 5757 -7 1201 234 42 119 chr15 77637860 77638245 -8057509 + MLT2B1 LTR ERVL 1 355 -59 198 0 0 0 chr15 77638884 77638906 -8056848 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 324 64 0 0 chr15 77639169 77639216 -8056538 + (TG)n Simple_repeat Simple_repeat 1 47 0 423 379 29 18 chr15 77639452 77639732 -8056022 - LTR16B LTR ERVL -150 314 32 1520 266 110 23 chr15 77639782 77640353 -8055401 - L2 LINE L2 -1030 2284 1664 217 266 62 0 chr15 77641884 77641948 -8053806 + MIR SINE MIR 120 187 -75 239 337 106 48 chr15 77642002 77642379 -8053375 + L2 LINE L2 2853 3251 -21 405 252 36 9 chr15 77642392 77642503 -8053251 - MIR SINE MIR -75 187 74 296 246 0 0 chr15 77643254 77643319 -8052435 + L2 LINE L2 3207 3271 -1 536 249 12 35 chr15 77644605 77644774 -8050980 - L1MA10 LINE L1 0 6334 6170 1512 200 33 31 chr15 77644843 77645465 -8050289 - L1ME LINE L1 -571 5595 4976 * 2774 260 64 18 chr15 77645441 77646479 -8049275 - L1ME LINE L1 -1720 4426 3342 285 29 0 0 chr15 77646738 77646772 -8048982 + (TA)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr15 77646855 77646884 -8048870 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr15 77648520 77648570 -8047184 + AT_rich Low_complexity Low_complexity 1 50 0 226 257 14 54 chr15 77649602 77649676 -8046078 - MIR SINE MIR -114 148 78 260 213 113 12 chr15 77649767 77649847 -8045907 - MER5A DNA MER1_type -92 97 10 30 59 0 0 chr15 77650932 77650983 -8044771 + AT_rich Low_complexity Low_complexity 1 51 0 439 288 128 27 chr15 77651351 77651570 -8044184 + MIR SINE MIR 5 245 -17 471 283 125 77 chr15 77651731 77651888 -8043866 + L2 LINE L2 2575 2723 -590 1297 181 79 55 chr15 77651888 77652180 -8043574 - AluJo SINE Alu -3 299 1 471 283 125 77 chr15 77652180 77652707 -8043047 + L2 LINE L2 2723 3313 0 2023 133 0 31 chr15 77652743 77653060 -8042694 + AluSx SINE Alu 1 307 -5 2955 6 0 0 chr15 77653855 77654170 -8041584 - AluYb8 SINE Alu -3 315 1 3971 105 12 5 chr15 77654573 77655155 -8040599 + L1P LINE L1 4430 5015 -1131 2830 174 54 3 chr15 77855167 77855782 -7839972 - L1M2 LINE L1 -4285 2098 1010 814 186 10 55 chr15 77855889 77856088 -7839666 + AluJo SINE Alu 105 294 -18 270 0 0 0 chr15 77856604 77856634 -7839120 + (A)n Simple_repeat Simple_repeat 1 30 0 2046 153 0 6 chr15 77856747 77857061 -7838693 - AluSx SINE Alu 0 312 1 835 176 27 58 chr15 77857231 77857419 -7838335 - AluJb SINE Alu -9 303 122 1921 122 0 38 chr15 77857422 77857709 -7838045 - AluSx SINE Alu -36 276 1 1833 24 0 0 chr15 77858085 77858290 -7837464 - L1P1 LINE L1 -433 5722 5518 976 226 122 0 chr15 77858342 77858598 -7837156 + MER58 DNA MER1_type 10 2376 -44 2002 116 36 0 chr15 77858602 77858877 -7836877 + AluSx SINE Alu 1 285 -27 2263 107 0 3 chr15 77859572 77859882 -7835872 + AluSg1 SINE Alu 1 309 0 1087 199 137 12 chr15 77860520 77860776 -7834978 - AluJo SINE Alu -14 288 1 7658 125 172 30 chr15 77861600 77863092 -7832662 - pTR5 LTR ERV1 0 2438 735 2271 100 0 7 chr15 77864052 77864353 -7831401 - AluSc SINE Alu -10 299 1 1737 159 10 29 chr15 77864356 77864670 -7831084 - AluJo SINE Alu -4 308 1 840 204 204 8 chr15 77866099 77866364 -7829390 - L1MD2 LINE L1 -12 6347 6031 * 1603 117 8 8 chr15 77866356 77866603 -7829151 + MSTA-int LTR MaLR 1405 1651 0 2265 136 123 5 chr15 77866603 77866985 -7828769 + MSTA LTR MaLR 1 427 -1 312 91 0 0 chr15 77867458 77867502 -7828252 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 468 296 0 0 chr15 77869189 77869324 -7826430 - MER113 DNA MER1_type? -125 396 262 3934 242 65 43 chr15 77869485 77871526 -7824228 - L1MDa LINE L1 -1645 4895 2637 492 169 0 0 chr15 77871527 77871604 -7824150 - MSTA LTR MaLR -351 77 1 6190 171 90 62 chr15 77871609 77873139 -7822615 - MSTA-int LTR MaLR -5 1575 3 589 105 0 23 chr15 77873140 77873226 -7822528 - MSTA LTR MaLR 0 428 345 2462 269 78 22 chr15 77873230 77874451 -7821303 - L1MDa LINE L1 -4983 1557 31 206 311 79 40 chr15 77874462 77874639 -7821115 - MIR3 SINE MIR -2 206 23 21 0 0 0 chr15 77876582 77876603 -7819151 + AT_rich Low_complexity Low_complexity 1 21 0 249 286 116 0 chr15 77877339 77877451 -7818303 - MIR SINE MIR -73 189 65 2014 171 16 6 chr15 77877835 77878198 -7817556 + MER93b LTR ERV1 5 371 -2 307 257 150 27 chr15 77878551 77878729 -7817025 - MIR SINE MIR -56 206 12 355 217 0 0 chr15 77880261 77880330 -7815424 - MER103 DNA DNA -45 121 53 2839 236 13 16 chr15 77881578 77882210 -7813544 + MER82 DNA MER2_type 17 646 -7 8831 214 72 19 chr15 77883437 77886275 -7809479 - L1PA15-16 LINE L1 -882 5967 2727 508 70 99 0 chr15 77886292 77886363 -7809391 - U6 snRNA snRNA 0 107 30 2681 225 42 25 chr15 77886378 77887085 -7808669 + L1ME1 LINE L1 5318 6036 -130 225 61 0 0 chr15 77887111 77887144 -7808610 + L1ME1 LINE L1 6129 6161 -5 560 311 88 21 chr15 77889545 77889966 -7805788 - L1ME3A LINE L1 -319 5851 5403 2659 36 0 3 chr15 77889967 77890272 -7805482 - AluY SINE Alu -7 304 1 245 316 111 5 chr15 77890405 77890595 -7805159 - L1ME3A LINE L1 -767 5379 5170 2385 102 3 0 chr15 77890596 77890900 -7804854 - AluSx SINE Alu -7 305 1 346 254 22 30 chr15 77890900 77891034 -7804720 + L1M4 LINE L1 4485 4617 -1529 181 295 162 23 chr15 77891166 77891339 -7804415 + MIR SINE MIR 51 247 -15 21 71 0 0 chr15 77891611 77891653 -7804101 + AT_rich Low_complexity Low_complexity 1 42 0 398 297 5 60 chr15 77891740 77891925 -7803829 - MIR SINE MIR -54 208 34 1808 222 86 44 chr15 77892954 77893480 -7802274 + MER69 DNA AcHobo 21 568 -658 1141 212 103 58 chr15 77893464 77893968 -7801786 + MER69 DNA AcHobo 1998 2524 -2 * 369 0 0 0 chr15 77894221 77894262 -7801492 + (CA)n Simple_repeat Simple_repeat 1 41 0 253 337 11 0 chr15 77895706 77895801 -7799953 - MIR SINE MIR -11 251 156 2288 107 7 0 chr15 77896156 77896455 -7799299 + AluSp SINE Alu 1 301 -12 362 233 0 0 chr15 77896474 77896564 -7799190 - L1MC4 LINE L1 -1339 6703 6614 289 273 30 0 chr15 77896476 77896575 -7799179 + L1MC4 LINE L1 6614 6715 -1327 * 1863 118 0 41 chr15 77897728 77897999 -7797755 + AluSx SINE Alu 1 260 -52 568 219 7 7 chr15 77898009 77898164 -7797590 + GA-rich Low_complexity Low_complexity 2 156 0 663 278 39 10 chr15 77898219 77898424 -7797330 - MIR SINE MIR -2 260 50 1424 249 18 72 chr15 77898512 77898954 -7796800 + L1M4 LINE L1 2 419 -6123 * 3264 223 49 24 chr15 77898945 77900013 -7795741 + L1M4 LINE L1 806 1927 -4719 209 239 0 70 chr15 77900223 77900294 -7795460 + C-rich Low_complexity Low_complexity 2 67 0 248 109 0 22 chr15 77900627 77900673 -7795081 + (GGA)n Simple_repeat Simple_repeat 3 47 0 2942 109 64 11 chr15 77901047 77901515 -7794239 + LTR3b LTR ERVK 8 500 0 304 79 0 0 chr15 77901515 77901553 -7794201 + LTR3b LTR ERVK 463 500 0 2299 69 0 7 chr15 77901698 77901989 -7793765 + AluY SINE Alu 1 289 -22 297 318 29 46 chr15 77902520 77902616 -7793138 - L1M4 LINE L1 -1585 4561 4465 2284 109 0 3 chr15 77902616 77902927 -7792827 - AluSq SINE Alu -3 310 1 297 318 29 46 chr15 77902927 77903069 -7792685 - L1M4 LINE L1 -1681 4465 4327 554 143 0 0 chr15 77903084 77903168 -7792586 + AluJo SINE Alu 11 94 -218 29654 38 19 3 chr15 77903168 77909193 -7786561 + L1PA3 LINE L1 5 6155 0 1199 142 4 62 chr15 77909195 77909421 -7786333 + AluJo SINE Alu 82 294 -18 261 0 0 0 chr15 77909937 77909966 -7785788 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr15 77910078 77910102 -7785652 + AT_rich Low_complexity Low_complexity 1 24 0 1471 148 0 9 chr15 77910102 77910325 -7785429 - AluSg/x SINE Alu -22 290 70 2929 154 40 10 chr15 77911628 77912128 -7783626 - MLT2B2 LTR ERVL 0 515 1 688 268 149 0 chr15 77912145 77912373 -7783381 - LTR16C LTR ERVL -69 422 161 1741 218 50 34 chr15 77913665 77914161 -7781593 + MLT1D LTR MaLR 2 505 0 228 268 82 10 chr15 77915774 77915871 -7779883 - L2 LINE L2 -47 3225 3122 343 317 38 16 chr15 77915943 77916126 -7779628 + MLT1I LTR MaLR 8 194 -215 763 238 19 124 chr15 77916223 77916538 -7779216 - LTR67 LTR ERVL -270 287 6 2417 196 45 38 chr15 77916901 77917407 -7778347 + Tigger7 DNA MER2_type 5 514 -1973 387 220 13 6 chr15 77917530 77917689 -7778065 + (TA)n Simple_repeat Simple_repeat 2 161 0 210 37 0 0 chr15 77917689 77917716 -7778038 + (GA)n Simple_repeat Simple_repeat 2 28 0 934 287 120 28 chr15 77918024 77918481 -7777273 + MLT1J LTR MaLR 11 509 -2 188 122 24 0 chr15 77918492 77918533 -7777221 + (TA)n Simple_repeat Simple_repeat 1 42 0 242 266 43 53 chr15 77918581 77918675 -7777079 - MIR SINE MIR -59 203 111 239 312 78 7 chr15 77919632 77919773 -7775981 + L3b LINE CR1 1102 1252 -331 220 284 39 24 chr15 77920761 77920888 -7774866 - MIR SINE MIR -60 148 20 369 179 179 115 chr15 77921415 77921633 -7774121 + MLT1L LTR MaLR 1 232 -383 11146 27 0 2 chr15 77921888 77923943 -7771811 + L1PA4 LINE L1 4103 6155 0 484 233 19 19 chr15 77923944 77924047 -7771707 - MER69 DNA AcHobo -663 563 461 396 299 31 8 chr15 77924111 77924238 -7771516 - HERV16 LTR ERVL -3614 1382 1253 1886 270 49 36 chr15 77924572 77924614 -7771140 - HERV16 LTR ERVL -3803 1193 1153 2182 107 0 10 chr15 77924614 77924914 -7770840 - AluSq SINE Alu -16 297 1 1886 270 49 36 chr15 77924914 77925455 -7770299 - HERV16 LTR ERVL -3843 1153 597 2095 151 0 0 chr15 77925455 77925759 -7769995 - AluSx SINE Alu -8 304 1 1886 270 49 36 chr15 77925759 77925862 -7769892 - HERV16 LTR ERVL -4399 597 497 539 298 30 76 chr15 77926383 77926476 -7769278 - LTR16A LTR ERVL -146 304 208 2439 131 14 3 chr15 77926476 77926836 -7768918 + THE1B LTR MaLR 1 364 0 539 298 30 76 chr15 77926836 77927044 -7768710 - LTR16A LTR ERVL -242 208 17 568 251 11 114 chr15 77928720 77928794 -7766960 - LTR16C LTR ERVL -2 489 409 2165 169 32 0 chr15 77928794 77929172 -7766582 - MLT1B LTR MaLR 0 390 1 568 251 11 114 chr15 77929172 77929360 -7766394 - LTR16C LTR ERVL -82 409 254 2425 223 116 39 chr15 77929387 77930149 -7765605 - MER99 DNA DNA -1 827 8 207 279 25 25 chr15 77930952 77931031 -7764723 - MER5A DNA MER1_type -26 163 85 442 273 99 6 chr15 77931918 77932090 -7763664 - LTR41 LTR ERVL -585 188 1 664 73 0 0 chr15 77932307 77932389 -7763365 - AluSg/x SINE Alu -14 296 215 309 118 0 0 chr15 77932419 77932470 -7763284 + (TC)n Simple_repeat Simple_repeat 1 51 0 641 276 32 47 chr15 77932839 77933118 -7762636 - MLT1L LTR MaLR -217 398 124 365 183 0 0 chr15 77933210 77933281 -7762473 - AluJo SINE Alu -168 134 64 187 369 12 12 chr15 77934167 77934251 -7761503 + MIR3 SINE MIR 3 86 -122 947 244 92 111 chr15 77934253 77934749 -7761005 + MLT1H1 LTR MaLR 1 489 -101 355 272 22 10 chr15 77934888 77935026 -7760728 + MIR SINE MIR 93 231 -31 1792 210 3 3 chr15 77935331 77935669 -7760085 + MLT2D LTR ERVL 3 340 -74 291 311 27 40 chr15 77936106 77936328 -7759426 - L2 LINE L2 -555 2759 2541 270 283 61 20 chr15 77937227 77937326 -7758428 + LTR16C LTR ERVL 32 134 -357 1146 225 22 103 chr15 77937391 77937760 -7757994 + LTR16C LTR ERVL 148 486 -5 603 74 0 0 chr15 77938754 77938835 -7756919 + (CA)n Simple_repeat Simple_repeat 1 81 0 304 267 129 0 chr15 77938880 77938981 -7756773 + MIR SINE MIR 119 232 -30 220 277 43 11 chr15 77939033 77939127 -7756627 - MIR SINE MIR -115 147 51 368 305 75 15 chr15 77940648 77940866 -7754888 - MIR SINE MIR -18 244 16 354 312 50 7 chr15 77941481 77941622 -7754132 + L2 LINE L2 3167 3313 0 1613 99 0 36 chr15 77942134 77942386 -7753368 + L1PA10 LINE L1 5924 6166 -2 2271 263 61 25 chr15 77942972 77943587 -7752167 + L1ME3A LINE L1 4915 5612 -558 1511 196 19 54 chr15 77943587 77943733 -7752021 + AluJb SINE Alu 1 151 -161 2367 101 0 3 chr15 77943733 77944040 -7751714 + AluY SINE Alu 1 306 -5 1511 196 19 54 chr15 77944040 77944210 -7751544 + AluJb SINE Alu 151 306 -6 2271 263 61 25 chr15 77944210 77944665 -7751089 + L1ME3A LINE L1 5612 6049 -121 1433 258 44 44 chr15 77944946 77945511 -7750243 + L1MC5 LINE L1 6919 7483 -478 379 289 47 60 chr15 77945610 77945842 -7749912 + L1ME3A LINE L1 5934 6162 -8 25 0 0 0 chr15 77946485 77946510 -7749244 + AT_rich Low_complexity Low_complexity 1 25 0 3585 79 0 6 chr15 77946609 77947092 -7748662 - L1PA8 LINE L1 0 6172 5693 3253 53 19 0 chr15 77947126 77947539 -7748215 + L1P3 LINE L1 5266 5686 -468 363 319 8 0 chr15 77947717 77947836 -7747918 + MIR SINE MIR 45 164 -98 236 242 50 20 chr15 77947881 77947980 -7747774 + MIR SINE MIR 161 262 0 349 309 176 28 chr15 77948062 77948453 -7747301 + L2 LINE L2 2824 3272 0 21 57 0 0 chr15 77949244 77949279 -7746475 + AT_rich Low_complexity Low_complexity 1 35 0 1758 246 67 69 chr15 77949476 77950488 -7745266 + L1MC5 LINE L1 6906 7915 -46 219 36 0 0 chr15 77950887 77950915 -7744839 + (TG)n Simple_repeat Simple_repeat 2 29 0 2107 120 18 87 chr15 77951316 77951524 -7744230 + THE1B LTR MaLR 1 171 -193 258 81 0 0 chr15 77951524 77951561 -7744193 + (TG)n Simple_repeat Simple_repeat 2 38 0 2107 120 18 87 chr15 77951561 77951743 -7744011 + THE1B LTR MaLR 171 364 0 230 179 18 0 chr15 77951744 77951800 -7743954 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 230 267 40 0 chr15 77952360 77952435 -7743319 - L1MC/D LINE L1 -1920 5888 5811 440 48 0 65 chr15 77952531 77952613 -7743141 - AluSp/q SINE Alu 0 313 233 288 0 0 0 chr15 77952618 77952650 -7743104 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr15 77952877 77952898 -7742856 + AT_rich Low_complexity Low_complexity 1 21 0 1040 288 62 61 chr15 77953026 77953054 -7742700 - L2 LINE L2 -38 3275 3249 3263 117 11 84 chr15 77953054 77953351 -7742403 + LTR26B LTR ERV1 1 237 -294 396 0 0 0 chr15 77953351 77953395 -7742359 + (CA)n Simple_repeat Simple_repeat 1 44 0 3263 117 11 84 chr15 77953395 77953670 -7742084 + LTR26B LTR ERV1 237 531 0 1040 288 62 61 chr15 77953670 77954793 -7740961 - L2 LINE L2 -64 3249 2120 1947 144 72 17 chr15 77955471 77955833 -7739921 + MLT2C2 LTR ERVL 1 423 -41 259 137 137 0 chr15 77955879 77955930 -7739824 + MLT2C2 LTR ERVL 401 458 -6 218 297 25 63 chr15 77956787 77956990 -7738764 + MIR3 SINE MIR 2 196 -63 478 296 83 10 chr15 77957792 77958018 -7737736 - MIR SINE MIR -10 252 11 2634 181 73 14 chr15 77958724 77959215 -7736539 - MLT2B1 LTR ERVL 0 520 1 1835 177 98 0 chr15 77960281 77960598 -7735156 - MER7A DNA MER2_type 0 346 1 230 277 11 53 chr15 77960624 77960718 -7735036 - MIR3 SINE MIR -31 177 88 8414 178 122 15 chr15 77961117 77961945 -7733809 - MER52A LTR ERV1 0 1755 1017 2997 3 0 0 chr15 77961945 77962263 -7733491 - AluYb8 SINE Alu 0 318 1 8414 178 122 15 chr15 77962263 77963019 -7732735 - MER52A LTR ERV1 -738 1017 1 204 233 96 14 chr15 77963175 77963248 -7732506 + MIR SINE MIR 104 182 -80 491 221 20 74 chr15 77963902 77964051 -7731703 + LTR55 LTR ERV 1 141 -407 1035 205 124 53 chr15 77964109 77964489 -7731265 + LTR55 LTR ERV 132 538 -10 212 307 165 8 chr15 77964527 77964654 -7731100 + MIR SINE MIR 33 179 -83 691 47 0 75 chr15 77965279 77965385 -7730369 - AluY SINE Alu -7 304 207 694 182 61 0 chr15 77965398 77965530 -7730224 + MER3 DNA MER1_type 7 146 -63 283 333 85 47 chr15 77965833 77966091 -7729663 - L2 LINE L2 -667 2647 2380 183 314 0 43 chr15 77966593 77966663 -7729091 + L2 LINE L2 3206 3272 0 316 282 78 0 chr15 77967156 77967259 -7728495 + L2 LINE L2 3203 3313 0 187 373 22 52 chr15 77968395 77968529 -7727225 + MIR SINE MIR 127 256 -6 783 215 18 36 chr15 77968761 77968775 -7726979 - L1MEc LINE L1 -3655 2560 2547 6911 126 59 49 chr15 77968775 77969315 -7726439 + Tigger3b DNA MER2_type 1 534 -2494 2137 104 18 0 chr15 77969315 77969630 -7726124 - AluSq SINE Alu 0 320 1 6911 126 59 49 chr15 77969630 77970306 -7725448 + Tigger3b DNA MER2_type 534 1230 -1 783 215 18 36 chr15 77970306 77970510 -7725244 - L1MEc LINE L1 -3668 2547 2346 2037 252 85 29 chr15 77970513 77971541 -7724213 - L1MEc LINE L1 -4397 1999 888 828 278 60 8 chr15 77971538 77971804 -7723950 - L1MEc LINE L1 -6091 305 26 * 279 0 0 0 chr15 77971896 77971927 -7723827 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 238 325 0 13 chr15 77971978 77972055 -7723699 + CT-rich Low_complexity Low_complexity 3 78 0 254 243 68 0 chr15 77972060 77972134 -7723620 - L2 LINE L2 -9 3263 3185 318 50 0 0 chr15 77972267 77972307 -7723447 + (TG)n Simple_repeat Simple_repeat 2 41 0 414 247 117 39 chr15 77972453 77972607 -7723147 + MIR SINE MIR 91 256 -6 2226 123 0 0 chr15 77973005 77973305 -7722449 - AluSx SINE Alu -12 300 1 242 332 65 14 chr15 77973496 77973713 -7722041 + L2 LINE L2 2832 3059 -213 930 292 106 25 chr15 77975247 77975897 -7719857 + L1MC/D LINE L1 3809 4511 -1635 243 198 161 25 chr15 77975913 77975994 -7719760 + L1MC/D LINE L1 5485 5576 -783 30 0 0 0 chr15 77976403 77976433 -7719321 + AT_rich Low_complexity Low_complexity 1 30 0 2307 109 3 3 chr15 77978511 77978823 -7716931 - AluSx SINE Alu 0 312 1 202 283 19 0 chr15 77979270 77979323 -7716431 + MIR SINE MIR 111 164 -98 198 274 0 0 chr15 77979448 77979499 -7716255 + MIR3 SINE MIR 136 186 -22 1644 187 3 14 chr15 77979536 77979830 -7715924 - AluJo SINE Alu -21 291 1 324 230 236 19 chr15 77979976 77980137 -7715617 - MIR SINE MIR -10 252 57 327 218 26 26 chr15 77980283 77980361 -7715393 + HAL1 LINE L1 4 81 -2426 1778 134 75 17 chr15 77980399 77980691 -7715063 + AluSg SINE Alu 1 309 -1 21 71 0 0 chr15 77980765 77980807 -7714947 + AT_rich Low_complexity Low_complexity 1 42 0 1664 198 96 3 chr15 77981202 77981536 -7714218 + MLT1A1 LTR MaLR 1 365 0 587 296 185 25 chr15 77981618 77982330 -7713424 + HAL1 LINE L1 825 1650 -857 213 245 0 49 chr15 77982359 77982461 -7713293 + A-rich Low_complexity Low_complexity 2 98 0 196 161 0 0 chr15 77982963 77982994 -7712760 + L3 LINE CR1 1539 1569 -8 2246 112 0 10 chr15 77983284 77983588 -7712166 + AluSx SINE Alu 1 301 -11 3153 191 41 2 chr15 77984012 77984624 -7711130 - L1MC3 LINE L1 0 7785 7150 1815 152 20 26 chr15 77984634 77984937 -7710817 - AluJo SINE Alu -11 301 1 250 243 180 85 chr15 77985600 77985789 -7709965 - MIR SINE MIR -44 218 12 852 214 128 5 chr15 77986344 77986531 -7709223 - MER63A DNA MER1_type 0 210 1 214 341 0 12 chr15 77987771 77987853 -7707901 + MIR3 SINE MIR 108 188 -20 187 333 0 40 chr15 77988325 77988400 -7707354 - MIR SINE MIR -6 256 185 232 306 93 52 chr15 77988818 77989011 -7706743 - MIR SINE MIR -28 234 34 428 254 25 107 chr15 77989013 77989148 -7706606 + L3 LINE CR1 1376 1520 -57 2125 103 3 27 chr15 77989148 77989448 -7706306 + AluSp SINE Alu 1 293 -20 2865 16 0 0 chr15 77989452 77989765 -7705989 + AluYb8 SINE Alu 1 313 -5 428 254 25 107 chr15 77989765 77989821 -7705933 + L3 LINE CR1 1523 1556 -21 865 247 126 40 chr15 77989848 77990221 -7705533 + MLT1I LTR MaLR 5 409 0 2196 213 53 5 chr15 77991830 77992267 -7703487 + MER74C LTR ERVL 3 460 0 391 298 73 8 chr15 77992475 77992599 -7703155 + L2 LINE L2 3140 3271 -1 228 167 0 74 chr15 77992639 77992693 -7703061 - L2 LINE L2 0 3313 3264 295 311 33 49 chr15 77992902 77993024 -7702730 + L2 LINE L2 3153 3272 0 736 240 62 6 chr15 77993104 77993283 -7702471 - MER5A DNA MER1_type 0 189 1 1355 240 109 26 chr15 77993552 77994019 -7701735 + L1ME3A LINE L1 5651 6156 -14 199 274 249 25 chr15 77995654 77995935 -7699819 + L2 LINE L2 2261 2604 -710 973 191 21 16 chr15 77995981 77996175 -7699579 + MER20 DNA MER1_type 25 219 0 197 275 12 38 chr15 77996821 77996901 -7698853 - L3 LINE CR1 -23 1554 1477 262 388 0 8 chr15 77996902 77997031 -7698723 + (CA)n Simple_repeat Simple_repeat 1 128 0 303 291 56 77 chr15 77997049 77997245 -7698509 - L3 LINE CR1 -125 1452 1261 517 344 61 13 chr15 77997412 77997723 -7698031 + L1MC4a LINE L1 5574 5899 -1909 4853 76 23 2 chr15 77998762 77999381 -7696373 - L1PA14 LINE L1 -9 6152 5521 354 45 0 0 chr15 77999816 77999860 -7695894 + (CA)n Simple_repeat Simple_repeat 1 44 0 474 327 50 30 chr15 78003732 78003934 -7691820 + MIR SINE MIR 51 256 -6 4723 164 34 14 chr15 78003996 78004822 -7690932 + L1MA8 LINE L1 4465 5273 -1018 2584 169 19 5 chr15 78004822 78005242 -7690512 + MSTB LTR MaLR 1 426 0 4723 164 34 14 chr15 78005242 78006049 -7689705 + L1MA8 LINE L1 5273 6291 0 1421 276 100 39 chr15 78006526 78007148 -7688606 - MLT2F LTR ERVL -3 660 1 340 275 84 21 chr15 78008396 78008538 -7687216 - Charlie8 DNA MER1_type -2247 170 20 523 233 68 40 chr15 78008739 78008915 -7686839 + L1MEc LINE L1 1700 1880 -4516 32 106 0 0 chr15 78008919 78009042 -7686712 + AT_rich Low_complexity Low_complexity 1 123 0 501 239 50 83 chr15 78009065 78009138 -7686616 + L1MEc LINE L1 1903 1977 -4419 2075 91 4 0 chr15 78009138 78009402 -7686352 + AluSg SINE Alu 36 300 -10 501 239 50 83 chr15 78009402 78009629 -7686125 + L1MEc LINE L1 1977 2193 -4203 1060 98 0 0 chr15 78009633 78009766 -7685988 + AluSp SINE Alu 1 133 -180 1357 248 34 18 chr15 78009768 78010250 -7685504 + L1MEc LINE L1 2163 2612 -3603 2613 173 57 12 chr15 78010270 78010766 -7684988 - MLT2B1 LTR ERVL -2 518 1 22 35 0 0 chr15 78011013 78011042 -7684712 + AT_rich Low_complexity Low_complexity 1 29 0 2231 121 3 0 chr15 78012079 78012384 -7683370 + AluSx SINE Alu 2 307 -5 405 0 20 0 chr15 78012729 78012779 -7682975 + MADE1 DNA Mariner 1 51 -29 360 282 68 17 chr15 78012817 78012934 -7682820 + MIR SINE MIR 57 179 -83 2370 93 0 0 chr15 78013338 78013629 -7682125 + AluSg1 SINE Alu 1 291 -18 459 261 228 8 chr15 78014851 78015204 -7680550 + L2 LINE L2 2586 3001 -312 2156 95 0 11 chr15 78015211 78015525 -7680229 - AluSx SINE Alu 0 311 1 832 196 13 0 chr15 78015531 78015684 -7680070 - AluJb SINE Alu -18 294 140 277 276 57 0 chr15 78015688 78015793 -7679961 + L2 LINE L2 3003 3113 -200 4810 186 39 6 chr15 78015894 78016738 -7679016 + L1M1 LINE L1 195 1066 -6499 1270 266 97 1 chr15 78017007 78017748 -7678006 + L1ME LINE L1 4925 5732 -438 255 244 23 47 chr15 78017871 78017957 -7677797 - L2 LINE L2 0 3272 3189 650 133 29 0 chr15 78017960 78018065 -7677689 - MER4B-int LTR ERV1 -4022 2736 2629 * 1860 144 52 32 chr15 78018045 78018414 -7677340 + MER4B-int LTR ERV1 2720 3095 -3663 * 4222 153 27 3 chr15 78018392 78019054 -7676700 + MER4B-int LTR ERV1 3411 4088 -2670 2863 130 20 9 chr15 78019053 78019491 -7676263 + MER4B-int LTR ERV1 4452 4894 -1864 * 477 162 212 0 chr15 78019592 78019691 -7676063 + MER20 DNA MER1_type 100 219 0 758 195 8 0 chr15 78019772 78019900 -7675854 - FLAM_A SINE Alu -4 129 1 476 249 146 24 chr15 78021114 78021327 -7674427 - MIR SINE MIR -14 248 10 1324 175 7 6 chr15 78022367 78022812 -7672942 - MLT1D LTR MaLR 0 505 3 682 116 9 12 chr15 78022845 78022954 -7672800 - MLT1D LTR MaLR -407 98 3 597 263 25 12 chr15 78023136 78023307 -7672447 + MER45A DNA AcHobo 4 177 -1 506 286 60 16 chr15 78023336 78023518 -7672236 - LTR16A LTR ERVL -120 330 141 474 269 128 45 chr15 78023608 78023693 -7672061 - L1ME3 LINE L1 -28 6134 6057 2286 97 3 3 chr15 78023693 78023993 -7671761 + AluSg SINE Alu 1 300 -10 474 269 128 45 chr15 78023993 78024149 -7671605 - L1ME3 LINE L1 -105 6057 5873 653 253 71 6 chr15 78024200 78024382 -7671372 - L1ME3 LINE L1 -389 5773 5580 250 276 31 10 chr15 78024937 78025035 -7670719 + MIR SINE MIR 117 216 -46 2191 136 0 0 chr15 78025442 78025752 -7670002 + AluSx SINE Alu 1 310 -2 2426 93 0 0 chr15 78027468 78027768 -7667986 - AluSx SINE Alu -12 300 1 3397 109 40 0 chr15 78028003 78028481 -7667273 - LOR1a LTR ERV1 0 497 1 556 253 0 19 chr15 78028645 78028799 -7666955 + MIR SINE MIR 23 173 -89 2072 132 51 31 chr15 78030246 78030602 -7665152 - THE1B LTR MaLR -1 363 1 325 272 150 12 chr15 78030932 78031105 -7664649 + L1ME4a LINE L1 5692 5888 -233 1863 139 0 4 chr15 78032221 78032495 -7663259 + AluJb SINE Alu 8 280 -32 22 0 0 0 chr15 78032495 78032517 -7663237 + AT_rich Low_complexity Low_complexity 1 22 0 195 236 28 69 chr15 78033063 78033135 -7662619 + MIR SINE MIR 70 138 -124 225 302 47 31 chr15 78033203 78033332 -7662422 - MER5A DNA MER1_type -32 157 27 1847 163 10 13 chr15 78033592 78033905 -7661849 - AluJo SINE Alu 0 312 1 2717 183 52 17 chr15 78034432 78034969 -7660785 - MER89 LTR ERV1 -1 558 3 29 0 0 0 chr15 78035604 78035633 -7660121 + AT_rich Low_complexity Low_complexity 1 29 0 248 26 0 53 chr15 78035839 78035877 -7659877 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 2122 118 7 0 chr15 78035987 78036275 -7659479 - AluSx SINE Alu -22 290 1 2185 72 48 17 chr15 78036280 78036571 -7659183 - AluY SINE Alu -11 300 1 227 299 103 9 chr15 78036849 78037063 -7658691 + L1ME LINE L1 5266 5499 -667 377 141 14 0 chr15 78037203 78037274 -7658480 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 282 160 0 0 chr15 78037382 78037432 -7658322 + (ATGGTG)n Simple_repeat Simple_repeat 4 53 0 730 87 0 10 chr15 78039396 78039500 -7656254 + AluSc SINE Alu 170 272 -37 884 94 0 31 chr15 78039503 78039662 -7656092 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 609 167 10 0 chr15 78040074 78040176 -7655578 + AluJb SINE Alu 149 251 -61 209 33 33 0 chr15 78040656 78040686 -7655068 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5568 47 0 0 chr15 78040686 78041346 -7654408 - L1PA8 LINE L1 -16 6156 5497 22 0 0 0 chr15 78041659 78041681 -7654073 + AT_rich Low_complexity Low_complexity 1 22 0 1087 100 0 20 chr15 78041683 78041833 -7653921 + AluSg SINE Alu 1 147 -163 2051 153 0 6 chr15 78042388 78042702 -7653052 - AluJb SINE Alu 0 312 1 2372 138 9 19 chr15 78042973 78043392 -7652362 + L1MA8 LINE L1 5874 6288 -3 26 50 0 0 chr15 78043392 78043432 -7652322 + AT_rich Low_complexity Low_complexity 1 40 0 2290 91 3 13 chr15 78043518 78043854 -7651900 - AluY SINE Alu 0 311 1 343 275 100 8 chr15 78043856 78043976 -7651778 - MIR SINE MIR -113 149 19 230 241 0 0 chr15 78044364 78044422 -7651332 + L1MA8 LINE L1 6017 6074 -217 2149 133 0 0 chr15 78044448 78044742 -7651012 + AluSx SINE Alu 1 294 -18 1210 215 32 41 chr15 78044974 78045251 -7650503 + MER93a LTR ERV1 67 342 -60 2429 153 54 18 chr15 78045251 78045305 -7650449 + LOR1b LTR ERV1 1 52 -409 2445 94 0 3 chr15 78045305 78045613 -7650141 + AluY SINE Alu 1 307 -4 2429 153 54 18 chr15 78045613 78046003 -7649751 + LOR1b LTR ERV1 52 461 0 1210 215 32 41 chr15 78046003 78046064 -7649690 + MER93a LTR ERV1 342 402 0 890 197 94 35 chr15 78046215 78046469 -7649285 - ORSL DNA AcHobo 0 275 7 221 361 0 0 chr15 78048288 78048360 -7647394 - L2 LINE L2 -1 3271 3200 513 0 0 0 chr15 78049148 78049205 -7646549 + (CA)n Simple_repeat Simple_repeat 2 58 0 1460 263 108 28 chr15 78050737 78051274 -7644480 - MLT1E LTR MaLR -13 580 1 884 230 103 136 chr15 78051333 78051603 -7644151 + MER77 LTR ERV1 54 331 -365 1545 179 71 37 chr15 78051603 78051956 -7643798 + MLT1A1 LTR MaLR 1 365 0 884 230 103 136 chr15 78051956 78052349 -7643405 + MER77 LTR ERV1 331 692 -4 426 248 19 50 chr15 78052784 78052945 -7642809 - MIR SINE MIR -5 257 102 258 245 180 75 chr15 78053163 78053441 -7642313 - MER102b DNA MER1_type -1 340 34 367 324 130 52 chr15 78053695 78054103 -7641651 - L3 LINE CR1 -61 1516 1077 216 0 0 0 chr15 78054138 78054162 -7641592 + (A)n Simple_repeat Simple_repeat 1 24 0 723 197 0 8 chr15 78054354 78054486 -7641268 + FLAM_C SINE Alu 2 132 -11 2655 33 0 0 chr15 78054671 78054970 -7640784 + AluY SINE Alu 1 299 -12 667 251 186 18 chr15 78054971 78055246 -7640508 - L1ME3A LINE L1 -9 6161 5841 193 389 0 0 chr15 78055759 78055849 -7639905 - L3 LINE CR1 -600 977 888 378 264 38 61 chr15 78056374 78056586 -7639168 + L1ME LINE L1 5533 5739 -382 680 249 132 57 chr15 78058356 78058690 -7637064 + MLT1J2 LTR MaLR 37 395 -55 223 403 8 15 chr15 78058942 78059076 -7636678 - L3 LINE CR1 -40 1537 1405 198 0 0 0 chr15 78059374 78059396 -7636358 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 1911 114 4 0 chr15 78061479 78061743 -7634011 + AluSx SINE Alu 48 312 0 212 311 150 33 chr15 78062561 78062741 -7633013 - MIR SINE MIR -60 202 2 208 280 144 8 chr15 78062815 78062933 -7632821 - MIR SINE MIR -30 232 99 232 330 185 0 chr15 78063253 78063426 -7632328 - L2 LINE L2 -5 3308 3104 2173 137 0 3 chr15 78063446 78063759 -7631995 + AluSx SINE Alu 1 312 0 196 338 0 25 chr15 78065072 78065152 -7630602 + MIR3 SINE MIR 9 86 -122 592 245 155 0 chr15 78065777 78065932 -7629822 + MER5A DNA MER1_type 10 188 -1 2370 104 0 13 chr15 78066284 78066601 -7629153 + AluSq SINE Alu 1 313 0 189 195 0 0 chr15 78066836 78066877 -7628877 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 363 331 74 11 chr15 78067463 78067638 -7628116 + MIR SINE MIR 40 225 -37 277 230 144 81 chr15 78067884 78068058 -7627696 + LTR33 LTR ERVL 33 217 -304 425 261 62 19 chr15 78068457 78068618 -7627136 + LTR33 LTR ERVL 345 512 -9 230 319 124 41 chr15 78069079 78069248 -7626506 + MIR3 SINE MIR 2 184 -24 1762 128 46 7 chr15 78069397 78069679 -7626075 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr15 78070182 78070205 -7625549 + AT_rich Low_complexity Low_complexity 1 23 0 329 287 147 47 chr15 78070638 78070896 -7624858 + L1ME4a LINE L1 5618 5901 -220 22 0 0 0 chr15 78071110 78071132 -7624622 + AT_rich Low_complexity Low_complexity 1 22 0 556 185 81 58 chr15 78071416 78071469 -7624285 + MER96B DNA MER1_type? 241 291 -126 2073 73 3 76 chr15 78071469 78071802 -7623952 - AluSc SINE Alu 0 311 1 556 185 81 58 chr15 78071802 78071920 -7623834 + MER96B DNA MER1_type? 291 417 0 319 279 82 16 chr15 78074103 78074225 -7621529 + MIR SINE MIR 3 132 -130 180 265 43 94 chr15 78075192 78075309 -7620445 - L2 LINE L2 -183 3130 3020 209 291 198 12 chr15 78075939 78076025 -7619729 - MIR3 SINE MIR -48 160 59 465 319 51 34 chr15 78076457 78076692 -7619062 + MIR SINE MIR 15 253 -9 373 250 179 13 chr15 78077839 78077995 -7617759 + MIR SINE MIR 40 221 -41 312 267 127 27 chr15 78078356 78078506 -7617248 + Charlie8 DNA MER1_type 114 278 -2139 867 164 96 28 chr15 78078698 78078809 -7616945 + MER5A DNA MER1_type 1 103 -86 243 0 0 0 chr15 78078809 78078836 -7616918 + (TG)n Simple_repeat Simple_repeat 2 28 0 2367 69 0 10 chr15 78078836 78079139 -7616615 - AluY SINE Alu -11 300 1 867 164 96 28 chr15 78079139 78079203 -7616551 + MER5A DNA MER1_type 102 189 0 199 271 14 29 chr15 78080315 78080385 -7615369 - MIR3 SINE MIR 0 208 140 334 211 48 58 chr15 78081946 78082050 -7613704 - MIR SINE MIR -147 115 13 21 36 0 0 chr15 78082320 78082348 -7613406 + AT_rich Low_complexity Low_complexity 1 28 0 335 203 54 31 chr15 78082632 78082749 -7613005 - MIR SINE MIR -92 116 20 226 266 0 16 chr15 78082759 78082823 -7612931 + CT-rich Low_complexity Low_complexity 1 63 0 33 80 0 0 chr15 78083629 78083704 -7612050 + AT_rich Low_complexity Low_complexity 1 75 0 775 308 57 32 chr15 78083773 78084373 -7611381 - L1ME3A LINE L1 -223 5947 5323 707 242 73 0 chr15 78084727 78084892 -7610862 + MLT1K LTR MaLR 395 571 -17 207 0 0 0 chr15 78085178 78085201 -7610553 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 808 249 67 107 chr15 78086638 78087104 -7608650 + MLT1J LTR MaLR 1 447 -64 510 106 0 0 chr15 78087175 78087241 -7608513 + AluSg/x SINE Alu 207 272 -37 4131 173 47 56 chr15 78087241 78087708 -7608046 + L1MB3 LINE L1 5023 5493 -690 2602 136 67 12 chr15 78087708 78087772 -7607982 - MSTC LTR MaLR 0 428 369 210 71 0 0 chr15 78087772 78087800 -7607954 + (TA)n Simple_repeat Simple_repeat 2 29 0 2602 136 67 12 chr15 78087800 78088141 -7607613 - MSTC LTR MaLR -59 369 1 4131 173 47 56 chr15 78088141 78088850 -7606904 + L1MB3 LINE L1 5493 6183 0 287 261 0 0 chr15 78088856 78088925 -7606829 + MLT1D LTR MaLR 1 69 -436 15743 219 35 18 chr15 78088943 78089770 -7605984 - L1PA15 LINE L1 -7 6809 5998 2530 75 0 0 chr15 78089770 78090078 -7605676 - AluY SINE Alu -1 310 3 15743 219 35 18 chr15 78090078 78094664 -7601090 - L1PA15 LINE L1 -818 5998 1286 183 42 0 0 chr15 78095011 78095035 -7600719 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1956 96 0 0 chr15 78095038 78095288 -7600466 - AluY SINE Alu -32 279 30 2141 124 3 0 chr15 78095288 78095578 -7600176 - AluSx SINE Alu -21 291 1 217 302 11 89 chr15 78096110 78096289 -7599465 + L2 LINE L2 2511 2675 -639 479 301 124 38 chr15 78096308 78096413 -7599341 - L1MEc LINE L1 -4812 1584 1489 1652 71 19 5 chr15 78096413 78096623 -7599131 - AluY SINE Alu -17 294 82 479 301 124 38 chr15 78096623 78097249 -7598505 - L1MEc LINE L1 -4907 1489 790 2190 97 30 10 chr15 78097774 78098072 -7597682 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr15 78098072 78098101 -7597653 + (TA)n Simple_repeat Simple_repeat 1 29 0 1249 27 27 0 chr15 78098288 78098518 -7597236 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2156 115 0 0 chr15 78099074 78099353 -7596401 + AluSc SINE Alu 1 279 -30 548 237 17 8 chr15 78099420 78099538 -7596216 - MIR SINE MIR -102 160 42 1668 189 19 53 chr15 78100153 78100529 -7595225 - MLT1A1 LTR MaLR 0 365 3 1811 234 103 28 chr15 78100577 78101072 -7594682 - MLT1G1 LTR MaLR -13 582 51 631 172 37 66 chr15 78101144 78101306 -7594448 + MLT1G1 LTR MaLR 318 402 -7 627 317 15 5 chr15 78101362 78101564 -7594190 - MIR SINE MIR -1 261 58 2330 70 0 10 chr15 78102050 78102370 -7593384 + AluY SINE Alu 1 311 0 879 188 120 14 chr15 78103140 78103348 -7592406 + MLT2C2 LTR ERVL 179 408 -56 259 189 42 32 chr15 78103434 78103529 -7592225 + (TA)n Simple_repeat Simple_repeat 2 97 0 283 200 47 106 chr15 78103529 78103614 -7592140 - L2 LINE L2 -13 3259 3180 353 283 244 10 chr15 78103944 78104149 -7591605 - L3 LINE CR1 -9 1568 1316 216 314 43 0 chr15 78104176 78104246 -7591508 + L2 LINE L2 3241 3313 0 189 0 0 0 chr15 78104740 78104761 -7590993 + (TA)n Simple_repeat Simple_repeat 2 22 0 412 184 0 0 chr15 78105034 78105110 -7590644 - LTR33A LTR ERVL -12 511 436 536 291 10 58 chr15 78105965 78106045 -7589709 - Charlie8 DNA MER1_type -87 254 172 2580 133 8 0 chr15 78106045 78106406 -7589348 - THE1B LTR MaLR 0 364 1 536 291 10 58 chr15 78106406 78106531 -7589223 - Charlie8 DNA MER1_type -169 172 59 311 341 31 0 chr15 78106669 78106798 -7588956 + MIR SINE MIR 98 230 -32 246 294 76 76 chr15 78107379 78107576 -7588178 + HAL1 LINE L1 12 208 -2299 2177 121 10 0 chr15 78108026 78108377 -7587377 + AluSc SINE Alu 1 354 0 1218 296 90 28 chr15 78108449 78109335 -7586419 + HAL1 LINE L1 844 1784 -723 674 294 77 4 chr15 78109341 78109613 -7586141 + L2 LINE L2 2649 2940 -374 533 287 18 6 chr15 78109613 78109777 -7585977 - HAL1 LINE L1 -778 1729 1564 746 268 60 32 chr15 78109781 78110095 -7585659 + L2 LINE L2 2949 3271 -42 344 155 14 0 chr15 78110106 78110177 -7585577 + GA-rich Low_complexity Low_complexity 3 74 0 2222 154 17 22 chr15 78110358 78110930 -7584824 + L1MC/D LINE L1 5041 5610 -723 2541 61 0 0 chr15 78110932 78111225 -7584529 + AluY SINE Alu 1 293 -18 21 57 0 0 chr15 78111423 78111458 -7584296 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr15 78111506 78111543 -7584211 + AT_rich Low_complexity Low_complexity 1 37 0 1568 234 37 6 chr15 78111573 78111927 -7583827 + MLT1A1 LTR MaLR 1 365 0 941 152 0 87 chr15 78111941 78112079 -7583675 - Tigger2 DNA MER2_type -2 2706 2586 2109 129 0 3 chr15 78112079 78112374 -7583380 + AluSx SINE Alu 1 294 -18 941 152 0 87 chr15 78112374 78112419 -7583335 - Tigger2 DNA MER2_type -122 2586 2539 3190 189 62 38 chr15 78112419 78113113 -7582641 + MER50 LTR ERV1 1 711 -23 1691 128 29 11 chr15 78113114 78113395 -7582359 - Tigger2 DNA MER2_type -166 2552 2267 304 170 128 64 chr15 78113381 78113475 -7582279 - Tigger2 DNA MER2_type -2616 102 3 * 905 272 123 27 chr15 78113606 78114044 -7581710 + LTR33 LTR ERVL 1 480 -41 305 307 48 30 chr15 78114116 78114347 -7581407 + L1MC5 LINE L1 4141 4375 -1771 2226 106 0 0 chr15 78114478 78114786 -7580968 - AluSg SINE Alu 0 308 1 418 244 140 60 chr15 78114787 78115222 -7580532 + L1MC5 LINE L1 4531 5000 -1146 2351 70 0 11 chr15 78115246 78115533 -7580221 + AluY SINE Alu 13 296 -15 1550 208 73 29 chr15 78116027 78116412 -7579342 - L1MD3 LINE L1 -24 7971 7570 380 221 84 75 chr15 78116537 78116750 -7579004 + L1MC5 LINE L1 5254 5468 -2340 391 198 0 27 chr15 78116772 78116883 -7578871 + GA-rich Low_complexity Low_complexity 2 109 0 392 321 30 6 chr15 78117312 78117480 -7578274 + LTR16B LTR ERVL 293 464 0 2800 37 0 0 chr15 78120048 78120373 -7575381 - L1PA5 LINE L1 -12 6142 5818 22 0 0 0 chr15 78120951 78120973 -7574781 + AT_rich Low_complexity Low_complexity 1 22 0 618 274 6 12 chr15 78121913 78122081 -7573673 + MER5B DNA MER1_type 12 178 0 204 367 75 14 chr15 78122934 78123081 -7572673 + L2 LINE L2 3117 3272 0 2191 112 0 23 chr15 78124098 78124401 -7571353 + AluSx SINE Alu 1 296 -16 679 221 28 6 chr15 78124512 78124693 -7571061 - Charlie2a DNA MER1_type -1910 952 768 654 213 254 85 chr15 78124722 78125111 -7570643 - Charlie2a DNA MER1_type -2308 474 20 917 300 18 29 chr15 78125289 78125669 -7570085 - L2 LINE L2 -821 2493 2118 2118 201 58 74 chr15 78126793 78127481 -7568273 + L1MC5 LINE L1 6684 7360 -601 683 210 0 0 chr15 78127507 78127626 -7568128 + FLAM_A SINE Alu 6 124 -18 2201 106 0 3 chr15 78127635 78127919 -7567835 + AluSg SINE Alu 9 291 -19 477 194 7 116 chr15 78128004 78128159 -7567595 + MER5C DNA MER1_type 1 138 -186 585 218 14 0 chr15 78128462 78128604 -7567150 + L1MA10 LINE L1 6177 6320 -14 3148 274 97 40 chr15 78128639 78129510 -7566244 + L1MCc LINE L1 22 842 -6099 863 238 29 38 chr15 78129510 78129720 -7566034 + MER63A DNA MER1_type 3 210 0 3148 274 97 40 chr15 78129720 78130822 -7564932 + L1MCc LINE L1 842 2115 -4826 1993 97 38 28 chr15 78133015 78133305 -7562449 + AluSx SINE Alu 3 295 -17 1106 147 0 0 chr15 78133311 78133468 -7562286 + FRAM SINE Alu 2 158 -18 1966 109 0 8 chr15 78134468 78134725 -7561029 - AluSx SINE Alu -57 255 1 614 247 16 5 chr15 78134758 78134944 -7560810 - L1MEc LINE L1 -4598 1798 1611 961 227 59 54 chr15 78135169 78135690 -7560064 + L1MCc LINE L1 2535 3018 -3923 444 188 156 0 chr15 78136193 78136379 -7559375 + MER5C DNA MER1_type 106 320 -4 1138 196 81 71 chr15 78136381 78136861 -7558893 + L1MC5 LINE L1 7430 7914 -47 33 25 0 0 chr15 78137222 78137262 -7558492 + AT_rich Low_complexity Low_complexity 1 40 0 249 246 251 15 chr15 78137319 78137514 -7558240 + MIR SINE MIR 3 243 -19 22 35 0 0 chr15 78138253 78138282 -7557472 + AT_rich Low_complexity Low_complexity 1 29 0 2639 55 3 0 chr15 78139286 78139594 -7556160 - AluY SINE Alu -2 309 1 186 222 0 0 chr15 78139654 78139708 -7556046 + T-rich Low_complexity Low_complexity 1 54 0 2864 139 8 24 chr15 78139909 78140377 -7555377 - L1PA16 LINE L1 -1 6165 5705 312 281 74 34 chr15 78140468 78140647 -7555107 + MIR SINE MIR 76 260 -2 384 77 0 0 chr15 78141616 78141668 -7554086 + (TG)n Simple_repeat Simple_repeat 1 52 0 1406 205 19 35 chr15 78142706 78143076 -7552678 + MLT1A1 LTR MaLR 1 364 -1 190 311 137 8 chr15 78143198 78143446 -7552308 + L3 LINE CR1 477 756 -821 217 309 41 101 chr15 78143729 78144146 -7551608 + L2 LINE L2 2831 3222 -50 233 264 0 0 chr15 78144191 78144244 -7551510 + L3 LINE CR1 949 1001 -576 7550 35 3 0 chr15 78144245 78145240 -7550514 + L1PA4 LINE L1 5146 6155 0 600 198 0 8 chr15 78145347 78145473 -7550281 + AluSg/x SINE Alu 186 310 0 432 103 0 26 chr15 78146607 78146685 -7549069 + L1PA2 LINE L1 6079 6154 -1 220 276 57 29 chr15 78146837 78146942 -7548812 + L3 LINE CR1 1180 1287 -290 228 35 0 0 chr15 78148267 78148296 -7547458 + (GA)n Simple_repeat Simple_repeat 2 30 0 1144 100 6 19 chr15 78149059 78149219 -7546535 + AluSg/x SINE Alu 70 227 -85 2259 140 28 14 chr15 78149315 78149671 -7546083 + THE1B LTR MaLR 4 364 0 476 203 72 6 chr15 78150943 78151102 -7544652 + MIR SINE MIR 16 189 -62 1090 152 13 65 chr15 78151233 78151464 -7544290 - MER20 DNA MER1_type 0 219 1 450 236 103 26 chr15 78151701 78151896 -7543858 - L2 LINE L2 -3 3310 3101 237 135 0 0 chr15 78152253 78152305 -7543449 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2395 58 3 0 chr15 78152311 78152602 -7543152 - AluY SINE Alu -19 292 1 2068 93 20 10 chr15 78153353 78153654 -7542100 + AluY SINE Alu 1 304 -7 187 296 153 10 chr15 78154532 78154630 -7541124 + L2 LINE L2 3136 3247 -25 2153 136 39 30 chr15 78154655 78155016 -7540738 + THE1B LTR MaLR 1 364 0 490 272 51 12 chr15 78155413 78155593 -7540161 + MIR SINE MIR 11 189 -63 502 283 93 68 chr15 78156118 78156485 -7539269 + L1ME4a LINE L1 5599 5974 -147 2162 126 3 0 chr15 78156545 78156847 -7538907 + AluSx SINE Alu 1 303 -9 294 293 20 53 chr15 78156849 78156999 -7538755 + MIR SINE MIR 27 171 -91 2227 120 0 3 chr15 78157995 78158295 -7537459 + AluSq SINE Alu 1 299 -14 221 258 169 0 chr15 78158778 78158902 -7536852 + MIR SINE MIR 118 262 0 358 228 75 41 chr15 78158953 78159074 -7536680 - MLT1L LTR MaLR 0 597 389 495 264 55 83 chr15 78159102 78159344 -7536410 - MLT1L LTR MaLR -207 408 109 2311 109 3 0 chr15 78159485 78159789 -7535965 + AluSx SINE Alu 2 306 -6 347 250 46 19 chr15 78159910 78160018 -7535736 + MER5B DNA MER1_type 1 111 -67 306 0 0 0 chr15 78162848 78162882 -7532872 + (T)n Simple_repeat Simple_repeat 1 34 0 1349 188 23 0 chr15 78162916 78163224 -7532530 - L1PA2 LINE L1 0 6155 5841 306 0 0 0 chr15 78163798 78163832 -7531922 + (T)n Simple_repeat Simple_repeat 1 34 0 3382 23 18 0 chr15 78163865 78164260 -7531494 - L1PA2 LINE L1 0 6155 5754 3532 185 91 97 chr15 78164781 78165319 -7530435 - MER45B DNA AcHobo -541 1040 509 1897 162 7 19 chr15 78165319 78165628 -7530126 + AluJb SINE Alu 1 305 -7 3532 185 91 97 chr15 78165628 78166131 -7529623 - MER45B DNA AcHobo -1072 509 5 183 287 60 60 chr15 78166338 78166488 -7529266 - MIR SINE MIR -78 184 35 * 742 250 84 48 chr15 78166484 78166867 -7528887 + L2 LINE L2 2856 3313 0 2847 153 36 44 chr15 78167067 78167589 -7528165 + MLT2B1 LTR ERVL 3 520 0 245 313 68 44 chr15 78167941 78168190 -7527564 + Charlie8 DNA MER1_type 20 242 -2175 204 291 0 0 chr15 78169245 78169300 -7526454 + (TG)n Simple_repeat Simple_repeat 2 56 0 232 154 0 0 chr15 78169889 78169928 -7525826 + GA-rich Low_complexity Low_complexity 2 40 0 2375 101 7 0 chr15 78169928 78170236 -7525518 + AluSx SINE Alu 1 310 -2 329 117 17 0 chr15 78170236 78170296 -7525458 + GA-rich Low_complexity Low_complexity 1 61 0 256 339 0 28 chr15 78221846 78221955 -7473799 - MIR3 SINE MIR -10 198 93 1024 256 159 5 chr15 78221972 78222343 -7473411 + LTR16A LTR ERVL 18 445 -5 281 271 14 14 chr15 78222757 78222827 -7472927 + L2 LINE L2 3233 3302 -11 389 314 29 59 chr15 78222966 78223170 -7472584 + MLT1K LTR MaLR 198 395 -193 853 75 0 0 chr15 78223536 78223643 -7472111 - AluSg SINE Alu -167 143 37 213 273 36 0 chr15 78224011 78224066 -7471688 - L2 LINE L2 0 3313 3257 33 25 0 0 chr15 78224263 78224303 -7471451 + AT_rich Low_complexity Low_complexity 1 40 0 785 305 73 0 chr15 78224316 78224549 -7471205 + MIR SINE MIR 13 262 0 483 354 165 33 chr15 78224576 78224681 -7471073 - L1ME4a LINE L1 -68 6053 5963 1807 145 110 3 chr15 78224681 78224991 -7470763 - MER2 DNA MER2_type -1 343 1 483 354 165 33 chr15 78224991 78225407 -7470347 - L1ME4a LINE L1 -158 5963 5463 311 256 51 0 chr15 78225582 78225660 -7470094 + MIR SINE MIR 2 83 -179 1220 130 0 0 chr15 78225885 78226054 -7469700 - AluSx SINE Alu -143 169 1 1663 167 7 13 chr15 78226636 78226941 -7468813 - AluJb SINE Alu -9 303 1 2058 91 40 7 chr15 78227331 78227627 -7468127 - AluSg SINE Alu -4 306 1 246 260 110 71 chr15 78227830 78227957 -7467797 + MIR SINE MIR 81 212 -50 732 260 45 0 chr15 78228906 78229106 -7466648 + MER63A DNA MER1_type 2 210 0 314 258 65 0 chr15 78229172 78229265 -7466489 + L1ME3 LINE L1 5302 5400 -764 997 265 46 52 chr15 78229272 78229751 -7466003 + L1ME3 LINE L1 5465 5940 -222 325 285 49 41 chr15 78229910 78230033 -7465721 + L1MC4 LINE L1 7914 8037 -5 854 157 42 0 chr15 78230045 78230211 -7465543 - L1MC3 LINE L1 0 7785 7613 1365 103 0 42 chr15 78230217 78230430 -7465324 - AluSg/x SINE Alu -15 297 94 4745 166 49 15 chr15 78230433 78231347 -7464407 - L1MC3 LINE L1 -426 7359 6415 2111 112 0 0 chr15 78231358 78231652 -7464102 - AluSx SINE Alu -18 294 1 450 0 0 0 chr15 78232204 78232254 -7463500 + (TG)n Simple_repeat Simple_repeat 2 51 0 1848 56 22 0 chr15 78232475 78232706 -7463048 - AluY SINE Alu -75 236 1 815 173 0 7 chr15 78232723 78232862 -7462892 - FLAM_C SINE Alu 0 143 6 1898 106 55 4 chr15 78233715 78234013 -7461741 + AluSx SINE Alu 1 312 0 338 252 31 63 chr15 78234035 78234162 -7461592 - LTR67 LTR ERVL -7 550 428 409 221 15 157 chr15 78234404 78234608 -7461146 - MER5A DNA MER1_type -14 175 1 249 253 165 44 chr15 78234640 78234731 -7461023 - MIR SINE MIR -146 116 15 281 150 61 143 chr15 78234793 78234838 -7460916 + MER113 DNA MER1_type? 79 126 -395 1650 153 13 51 chr15 78234838 78235152 -7460602 + AluJo SINE Alu 1 302 -10 2289 54 0 17 chr15 78235154 78235470 -7460284 + AluY SINE Alu 1 311 0 281 150 61 143 chr15 78235470 78235568 -7460186 + MER113 DNA MER1_type? 127 213 -308 388 191 15 0 chr15 78235574 78235642 -7460112 + FRAM/FAM SINE Alu 1 68 -98 200 301 41 41 chr15 78236266 78236339 -7459415 + L2 LINE L2 3236 3308 -5 213 296 0 19 chr15 78236498 78236552 -7459202 - MIR3 SINE MIR -32 176 124 260 261 87 9 chr15 78236701 78236815 -7458939 + MIR SINE MIR 33 161 -65 2036 128 0 0 chr15 78237029 78237341 -7458413 - AluSx SINE Alu 0 312 1 1755 157 10 0 chr15 78237341 78237639 -7458115 - AluJb SINE Alu -10 302 1 218 196 0 0 chr15 78238075 78238121 -7457633 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 393 288 75 14 chr15 78238168 78238314 -7457440 - L2 LINE L2 0 3313 3159 2028 124 0 0 chr15 78238499 78238790 -7456964 - AluSx SINE Alu -21 291 1 488 210 45 51 chr15 78239323 78239499 -7456255 + MER5B DNA MER1_type 1 175 -3 284 208 0 89 chr15 78239754 78239855 -7455899 + L1ME3A LINE L1 6061 6152 -18 2240 86 0 7 chr15 78239865 78240168 -7455586 - AluSx SINE Alu -11 301 1 396 0 0 0 chr15 78240189 78240233 -7455521 + (CA)n Simple_repeat Simple_repeat 1 44 0 343 339 8 17 chr15 78240245 78240363 -7455391 + HAL1b LINE L1 1232 1348 0 33 46 0 15 chr15 78241347 78241359 -7454395 + AT_rich Low_complexity Low_complexity 1 12 -52 1969 134 0 7 chr15 78241359 78241649 -7454105 - AluSx SINE Alu -24 288 1 33 46 0 15 chr15 78241649 78241701 -7454053 + AT_rich Low_complexity Low_complexity 12 64 0 270 225 0 0 chr15 78242324 78242395 -7453359 + GA-rich Low_complexity Low_complexity 1 71 0 546 93 0 0 chr15 78243453 78243539 -7452215 + (TA)n Simple_repeat Simple_repeat 2 87 0 716 58 0 0 chr15 78243539 78243625 -7452129 - AluSg/x SINE Alu -16 294 209 196 339 0 0 chr15 78243666 78243731 -7452023 - MIR SINE MIR -50 212 148 2412 41 14 0 chr15 78243735 78244030 -7451724 - AluY SINE Alu -12 299 1 1450 153 52 52 chr15 78244634 78244807 -7450947 - AluJo SINE Alu -24 288 113 2175 141 19 21 chr15 78244807 78245183 -7450571 - THE1C LTR MaLR 0 375 1 1450 153 52 52 chr15 78245183 78245297 -7450457 - AluJo SINE Alu -198 114 1 293 256 29 80 chr15 78245370 78245507 -7450247 + L1ME LINE L1 5550 5679 -442 574 123 0 0 chr15 78245569 78245650 -7450104 - AluJ/FRAM SINE Alu -14 298 218 1842 112 4 11 chr15 78245751 78246028 -7449726 - AluSx SINE Alu -37 275 1 252 235 0 0 chr15 78246028 78246079 -7449675 + L1MB7 LINE L1 5232 5282 -864 1846 146 0 0 chr15 78246103 78246383 -7449371 - AluJb SINE Alu -31 281 2 4691 164 9 45 chr15 78246383 78246517 -7449237 + L1MB7 LINE L1 5273 5410 -774 2247 119 6 26 chr15 78246517 78246861 -7448893 + MER1B DNA MER1_type 1 337 0 4691 164 9 45 chr15 78246861 78247135 -7448619 + L1MB7 LINE L1 5410 5692 -492 2164 126 0 0 chr15 78247135 78247445 -7448309 + AluSx SINE Alu 1 310 -2 4691 164 9 45 chr15 78247445 78247845 -7447909 + L1MB7 LINE L1 5692 6046 -138 1815 149 0 52 chr15 78247845 78248174 -7447580 + AluJo SINE Alu 1 312 0 4691 164 9 45 chr15 78248174 78248293 -7447461 + L1MB7 LINE L1 6046 6168 -16 2071 86 65 0 chr15 78249360 78249650 -7446104 - AluSc SINE Alu 0 309 1 1649 128 4 0 chr15 78250209 78250452 -7445302 + AluSg SINE Alu 1 244 -66 349 103 29 0 chr15 78250926 78250994 -7444760 + (TG)n Simple_repeat Simple_repeat 2 71 0 2082 114 7 0 chr15 78252735 78253032 -7442722 - AluSq SINE Alu -14 299 1 270 280 160 10 chr15 78253114 78253214 -7442540 + MIR SINE MIR 25 139 -123 1469 184 0 59 chr15 78253372 78253692 -7442062 + AluJb SINE Alu 1 301 -11 198 0 0 0 chr15 78254630 78254652 -7441102 + (GGA)n Simple_repeat Simple_repeat 2 23 0 1878 131 0 0 chr15 78254845 78255119 -7440635 + AluSx SINE Alu 1 274 -38 21 0 0 0 chr15 78255600 78255621 -7440133 + AT_rich Low_complexity Low_complexity 1 21 0 682 150 108 0 chr15 78255626 78255746 -7440008 + FLAM_A SINE Alu 1 133 0 2279 73 0 10 chr15 78255780 78256083 -7439671 - AluY SINE Alu -11 300 1 1064 144 0 6 chr15 78256477 78256657 -7439097 - AluSg/x SINE Alu 0 310 132 2258 73 7 0 chr15 78256657 78256957 -7438797 - AluY SINE Alu -9 302 1 1663 170 33 0 chr15 78257005 78257305 -7438449 - AluSx SINE Alu -2 310 1 2170 119 3 0 chr15 78258757 78259060 -7436694 + AluSx SINE Alu 1 304 -8 2339 84 0 7 chr15 78259104 78259412 -7436342 + AluSq SINE Alu 1 306 -7 1619 196 0 0 chr15 78259459 78259755 -7435999 + AluJo SINE Alu 1 296 -16 201 39 0 0 chr15 78260545 78260571 -7435183 + (TC)n Simple_repeat Simple_repeat 1 26 0 1937 142 0 13 chr15 78260634 78260943 -7434811 + AluSx SINE Alu 1 305 -7 2493 196 69 9 chr15 78261018 78261585 -7434169 + L1MD2 LINE L1 5757 6357 -2 2060 134 7 0 chr15 78261710 78262017 -7433737 + AluSx SINE Alu 1 309 -3 1599 168 3 30 chr15 78262329 78262633 -7433121 - AluJo SINE Alu -16 296 1 815 57 9 0 chr15 78264219 78264324 -7431430 + AluSg SINE Alu 1 106 -204 12626 181 18 41 chr15 78264424 78267160 -7428594 - L1M2c LINE L1 -4470 2698 5 335 251 31 117 chr15 78267190 78267248 -7428506 - MIR SINE MIR -105 157 96 2337 96 0 0 chr15 78267248 78267560 -7428194 + AluSx SINE Alu 1 312 0 335 251 31 117 chr15 78267560 78267664 -7428090 - MIR SINE MIR -166 96 9 1627 141 10 53 chr15 78267834 78268133 -7427621 + L1MC1 LINE L1 6047 6332 -1 2290 79 3 3 chr15 78268347 78268651 -7427103 + AluSp SINE Alu 1 304 -9 2110 140 66 46 chr15 78271784 78272176 -7423578 - LTR12 LTR ERV1 -314 400 1 284 294 24 0 chr15 78274576 78274661 -7421093 - MER5A DNA MER1_type -37 152 66 829 174 58 0 chr15 78274661 78274816 -7420938 - AluJb SINE Alu -12 300 137 248 122 24 0 chr15 78274819 78274860 -7420894 - MER5A DNA MER1_type -115 74 33 6793 129 221 32 chr15 78274990 78276429 -7419325 + pTR5 LTR ERV1 728 2438 0 201 339 96 0 chr15 78276734 78276849 -7418905 + MIR SINE MIR 88 213 -49 2032 96 3 7 chr15 78277209 78277501 -7418253 - AluSx SINE Alu -21 291 1 198 292 56 0 chr15 78277594 78277666 -7418088 + L3 LINE CR1 196 271 -1306 340 335 73 52 chr15 78278910 78279197 -7416557 - L2 LINE L2 0 3272 2980 1911 128 28 10 chr15 78279225 78279346 -7416408 + AluSx SINE Alu 1 118 -194 459 0 0 0 chr15 78279346 78279397 -7416357 + (CA)n Simple_repeat Simple_repeat 2 52 0 1911 128 28 10 chr15 78279397 78279564 -7416190 + AluSx SINE Alu 118 294 -18 898 266 124 36 chr15 78279582 78280049 -7415705 - MLT1J LTR MaLR 0 511 4 246 335 53 39 chr15 78280275 78280481 -7415273 - L2 LINE L2 -649 2665 2457 615 248 35 0 chr15 78280588 78280729 -7415025 + MIR SINE MIR 117 262 0 1604 134 34 19 chr15 78281046 78281314 -7414440 - L1PA10 LINE L1 0 6168 5897 281 262 0 0 chr15 78281554 78281615 -7414139 - MER94 DNA DNA -2 132 72 391 224 64 45 chr15 78283339 78283495 -7412259 - MER114 LTR ERV 0 648 490 3369 160 14 72 chr15 78283506 78283562 -7412192 + L1MB5 LINE L1 5456 5514 -660 1848 121 44 0 chr15 78283562 78283834 -7411920 + AluSx SINE Alu 12 295 -17 3369 160 14 72 chr15 78283834 78284311 -7411443 + L1MB5 LINE L1 5514 5940 -234 2062 116 7 0 chr15 78284311 78284603 -7411151 + AluSx SINE Alu 1 294 -18 3369 160 14 72 chr15 78284603 78284780 -7410974 + L1MB5 LINE L1 5940 6126 -48 884 201 161 45 chr15 78284785 78285208 -7410546 - MER114 LTR ERV -111 537 66 398 205 0 0 chr15 78285216 78285299 -7410455 - AluJ/FRAM SINE Alu -1 301 219 261 185 92 15 chr15 78285300 78285365 -7410389 - MER114 LTR ERV -578 70 1 1058 117 18 0 chr15 78285540 78285703 -7410051 - AluY SINE Alu -12 299 134 21 71 0 0 chr15 78285772 78285814 -7409940 + AT_rich Low_complexity Low_complexity 1 42 0 1913 131 0 33 chr15 78285846 78286152 -7409602 + AluSx SINE Alu 1 296 -16 200 111 28 0 chr15 78286155 78286191 -7409563 + (TA)n Simple_repeat Simple_repeat 1 37 0 274 246 16 0 chr15 78286244 78286305 -7409449 - MER94 DNA DNA -72 62 1 803 253 66 57 chr15 78286657 78286837 -7408917 + L1MC4 LINE L1 6764 6941 -1101 1839 113 24 10 chr15 78286837 78287128 -7408626 - AluSx SINE Alu -17 295 1 803 253 66 57 chr15 78287128 78287376 -7408378 + L1MC4 LINE L1 6941 7281 -761 313 242 0 0 chr15 78287401 78287463 -7408291 + AluJ/FLAM SINE Alu 1 62 -240 2102 121 0 0 chr15 78287491 78287788 -7407966 - AluSx SINE Alu -15 297 1 536 254 25 16 chr15 78287958 78288080 -7407674 + L2 LINE L2 3137 3259 -13 186 103 0 0 chr15 78288080 78288109 -7407645 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1992 139 3 0 chr15 78288695 78288998 -7406756 - AluSx SINE Alu -8 304 1 192 152 0 0 chr15 78289030 78289063 -7406691 + CT-rich Low_complexity Low_complexity 2 34 0 1314 128 5 5 chr15 78289619 78289815 -7405939 - AluSx SINE Alu -116 196 1 1487 188 38 3 chr15 78289901 78290081 -7405673 - AluJo SINE Alu -3 309 114 204 40 0 0 chr15 78290081 78290106 -7405648 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1487 188 38 3 chr15 78290106 78290212 -7405542 - AluJo SINE Alu -198 114 13 2281 96 0 3 chr15 78290738 78291050 -7404704 + AluSx SINE Alu 1 311 -1 477 315 139 9 chr15 78291191 78291407 -7404347 - MIR SINE MIR 0 262 19 1754 140 0 27 chr15 78291487 78291806 -7403948 + AluJb SINE Alu 1 311 0 420 214 21 100 chr15 78294159 78294299 -7401455 + L2 LINE L2 3139 3267 -5 213 213 0 0 chr15 78294343 78294390 -7401364 + GA-rich Low_complexity Low_complexity 4 50 0 2051 133 0 0 chr15 78294549 78294857 -7400897 - AluSg SINE Alu -2 308 1 594 176 78 56 chr15 78294857 78294999 -7400755 - MIR SINE MIR -84 178 34 201 239 0 0 chr15 78296065 78296111 -7399643 + CT-rich Low_complexity Low_complexity 2 47 0 365 127 0 14 chr15 78296128 78296199 -7399555 + (CA)n Simple_repeat Simple_repeat 2 71 0 872 129 0 0 chr15 78296858 78296990 -7398764 - AluSq/x SINE Alu -180 132 1 1803 85 93 4 chr15 78299774 78300032 -7395722 + AluSc SINE Alu 17 297 -12 296 277 168 37 chr15 78300075 78300272 -7395482 - MIR3 SINE MIR -48 214 2 2951 123 35 14 chr15 78300351 78300839 -7394915 + L1MB3 LINE L1 5683 6180 -3 2285 87 0 3 chr15 78300843 78301143 -7394611 + AluSq SINE Alu 1 299 -14 2147 99 3 3 chr15 78301145 78301439 -7394315 + AluSc SINE Alu 1 294 -15 3894 170 48 47 chr15 78301559 78302283 -7393471 - L1MB3 LINE L1 -14 6169 5442 1735 132 58 3 chr15 78302283 78302578 -7393176 - AluSx SINE Alu -1 311 1 3894 170 48 47 chr15 78302578 78302687 -7393067 - L1MB3 LINE L1 -741 5442 5335 503 122 0 5 chr15 78302687 78302864 -7392890 + AluSx SINE Alu 1 272 -38 622 139 21 21 chr15 78302867 78303011 -7392743 + GA-rich Low_complexity Low_complexity 2 145 0 330 26 0 0 chr15 78303109 78303148 -7392606 + (TG)n Simple_repeat Simple_repeat 1 39 0 818 264 25 67 chr15 78303958 78304307 -7391447 + L1MEd LINE L1 1001 1363 -4766 2201 104 0 0 chr15 78304307 78304604 -7391150 + AluSx SINE Alu 1 297 -15 818 264 25 67 chr15 78304604 78304647 -7391107 + L1MEd LINE L1 1363 1406 -4723 1969 131 0 10 chr15 78304647 78304959 -7390795 + AluSx SINE Alu 1 309 -3 818 264 25 67 chr15 78304959 78305208 -7390546 + L1MEd LINE L1 1406 1993 -4136 2249 69 10 3 chr15 78305209 78305499 -7390255 + AluY SINE Alu 1 292 -19 3053 195 17 17 chr15 78305522 78306153 -7389601 + L1PA13 LINE L1 1297 1927 -4860 1842 137 10 16 chr15 78306155 78306450 -7389304 + AluJb SINE Alu 1 295 -17 865 52 0 45 chr15 78306450 78306604 -7389150 + (GGGAA)n Simple_repeat Simple_repeat 3 149 0 1842 137 10 16 chr15 78306604 78306622 -7389132 + AluJb SINE Alu 295 312 0 499 300 107 23 chr15 78308850 78309363 -7386391 + L1M4 LINE L1 4817 5372 -774 1967 119 31 3 chr15 78309365 78309651 -7386103 - AluSq SINE Alu -19 294 1 1378 143 0 9 chr15 78309653 78309877 -7385877 - AluJo SINE Alu -10 302 81 29 0 0 0 chr15 78310144 78310173 -7385581 + AT_rich Low_complexity Low_complexity 1 29 0 1016 75 8 0 chr15 78310173 78310306 -7385448 - AluSp SINE Alu -179 134 1 925 283 154 24 chr15 78311214 78312109 -7383645 - L2 LINE L2 0 3313 2313 212 381 67 15 chr15 78312104 78312238 -7383516 - L2 LINE L2 0 3272 3132 * 1958 132 6 22 chr15 78312594 78312905 -7382849 - AluJo SINE Alu -6 306 1 363 214 21 13 chr15 78312956 78313058 -7382696 - MIR SINE MIR -93 115 15 2310 84 40 0 chr15 78313212 78313511 -7382243 - AluY SINE Alu 0 311 1 484 257 7 34 chr15 78314186 78314334 -7381420 + MER117 DNA MER1_type 7 150 -47 1595 164 49 7 chr15 78314924 78315210 -7380544 - AluJb SINE Alu -14 298 1 1085 212 249 24 chr15 78315213 78315623 -7380131 - MLT1D LTR MaLR -3 502 1 1730 90 5 0 chr15 78315836 78316058 -7379696 - AluSq SINE Alu -19 294 72 2410 92 7 0 chr15 78317230 78317536 -7378218 - AluSg SINE Alu -2 308 1 444 318 15 20 chr15 78317907 78318102 -7377652 + MIR SINE MIR 2 195 -67 338 360 25 0 chr15 78318174 78318335 -7377419 + MIR SINE MIR 57 221 -41 2119 101 24 7 chr15 78318742 78319029 -7376725 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr15 78321066 78321087 -7374667 + AT_rich Low_complexity Low_complexity 1 21 0 2903 46 0 0 chr15 78321601 78321948 -7373806 - L1PA5 LINE L1 0 6154 5808 287 363 61 11 chr15 78322256 78322540 -7373214 + L3 LINE CR1 246 511 -1066 1474 205 34 24 chr15 78322634 78322927 -7372827 + AluJo SINE Alu 1 296 -16 4805 152 31 24 chr15 78323045 78323168 -7372586 + L1MB7 LINE L1 5043 5164 -1020 2856 64 13 11 chr15 78323168 78323544 -7372210 + L1PA5 LINE L1 5776 6152 -2 4805 152 31 24 chr15 78323544 78324546 -7371208 + L1MB7 LINE L1 5164 6178 -6 281 267 50 20 chr15 78324555 78324656 -7371098 + L3 LINE CR1 811 914 -663 254 211 278 0 chr15 78324825 78324915 -7370839 - MER5A DNA MER1_type -14 175 61 294 95 0 0 chr15 78324921 78324963 -7370791 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 2367 80 0 7 chr15 78324968 78325268 -7370486 - AluSq SINE Alu -15 298 1 183 213 49 16 chr15 78325268 78325329 -7370425 - MER5A DNA MER1_type -113 76 14 272 288 25 8 chr15 78325344 78325462 -7370292 - MIR SINE MIR -133 129 10 232 211 35 0 chr15 78325719 78325776 -7369978 + L3 LINE CR1 1373 1431 -146 327 229 240 44 chr15 78325860 78326043 -7369711 + MER113 DNA MER1_type? 154 372 -149 180 267 70 70 chr15 78326188 78326274 -7369480 - L3 LINE CR1 -357 1220 1135 251 163 41 0 chr15 78326493 78326542 -7369212 + L3 LINE CR1 1342 1392 -185 2328 86 27 0 chr15 78326559 78326851 -7368903 + AluSx SINE Alu 1 300 -12 527 262 71 22 chr15 78327119 78327302 -7368452 - MIR SINE MIR -67 195 4 1180 130 10 48 chr15 78329111 78329319 -7366435 - THE1A LTR MaLR -1 354 155 2175 108 13 13 chr15 78329319 78329626 -7366128 + AluSx SINE Alu 1 307 -5 1970 150 3 13 chr15 78329626 78329939 -7365815 + AluSx SINE Alu 1 310 -2 2038 103 0 47 chr15 78330246 78330546 -7365208 + AluSq SINE Alu 1 286 -27 1857 169 20 0 chr15 78330760 78331062 -7364692 + AluJb SINE Alu 5 312 0 685 88 39 0 chr15 78331128 78331230 -7364524 - AluY SINE Alu -12 299 194 2345 100 0 3 chr15 78331649 78331960 -7363794 - AluSg SINE Alu 0 310 1 2343 83 0 29 chr15 78332026 78332339 -7363415 - AluSq SINE Alu -9 304 1 231 259 37 49 chr15 78333254 78333335 -7362419 - MIR3 SINE MIR -10 198 119 664 205 32 6 chr15 78333355 78333511 -7362243 - MIR SINE MIR -67 195 36 625 120 10 10 chr15 78333790 78333890 -7361864 + MLT1D LTR MaLR 404 503 -2 2126 130 3 0 chr15 78333912 78334211 -7361543 + AluJb SINE Alu 1 300 -12 346 301 18 9 chr15 78334214 78334327 -7361427 + L2 LINE L2 3197 3310 -3 239 200 20 0 chr15 78334342 78334392 -7361362 + MER103 DNA DNA 109 159 -7 2634 33 0 0 chr15 78335139 78335440 -7360314 - AluY SINE Alu -10 301 1 338 0 24 0 chr15 78335638 78335680 -7360074 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2073 97 0 0 chr15 78335681 78335960 -7359794 - AluSx SINE Alu -33 279 1 21 36 0 0 chr15 78338841 78338869 -7356885 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr15 78339759 78339788 -7355966 + AT_rich Low_complexity Low_complexity 1 29 0 346 311 114 42 chr15 78339888 78340319 -7355435 + L1MC/D LINE L1 4233 4694 -1452 345 349 63 15 chr15 78341026 78341295 -7354459 + L1MC/D LINE L1 5443 5724 -2084 306 73 0 0 chr15 78342113 78342154 -7353600 + (TG)n Simple_repeat Simple_repeat 1 41 0 1883 116 20 20 chr15 78342841 78343135 -7352619 + AluSx SINE Alu 1 294 -18 180 288 38 25 chr15 78343735 78343815 -7351939 - L2 LINE L2 -289 2983 2903 489 255 113 34 chr15 78344068 78344376 -7351378 + L1MC/D LINE L1 5474 5802 -340 456 19 0 0 chr15 78344430 78344483 -7351271 + (TG)n Simple_repeat Simple_repeat 2 54 0 3026 163 24 10 chr15 78344666 78345249 -7350505 - L1MB4 LINE L1 -2 6178 5588 189 0 0 0 chr15 78346171 78346192 -7349562 + (A)n Simple_repeat Simple_repeat 1 21 0 890 289 17 50 chr15 78346307 78346723 -7349031 + L1MC4a LINE L1 5258 5659 -503 2274 114 0 0 chr15 78347065 78347372 -7348382 - AluSx SINE Alu -5 307 1 2241 84 24 0 chr15 78347546 78347843 -7347911 - AluSg SINE Alu -6 304 1 385 263 52 52 chr15 78347989 78348202 -7347552 + L1MC4a LINE L1 5690 5902 -1906 2196 87 17 0 chr15 78348359 78348648 -7347106 - AluSc SINE Alu -15 294 1 187 308 110 11 chr15 78348804 78348895 -7346859 - L2 LINE L2 -1 3271 3172 1865 176 0 0 chr15 78349171 78349466 -7346288 - AluSq SINE Alu -18 295 1 185 239 0 45 chr15 78349669 78349736 -7346018 + MIR SINE MIR 102 165 -97 249 77 0 0 chr15 78349839 78349878 -7345876 + Alu SINE Alu 261 299 -2 35 24 0 0 chr15 78349963 78350005 -7345749 + AT_rich Low_complexity Low_complexity 1 42 0 749 149 0 64 chr15 78350444 78350585 -7345169 + AluJb SINE Alu 137 268 -44 879 211 0 0 chr15 78350586 78350747 -7345007 + AluJo SINE Alu 5 165 -147 255 186 200 0 chr15 78351096 78351166 -7344588 - MIR SINE MIR -64 144 61 2551 185 50 31 chr15 78352162 78352739 -7343015 - L1ME2 LINE L1 -3 6161 5574 24 0 0 0 chr15 78353224 78353248 -7342506 + AT_rich Low_complexity Low_complexity 1 24 0 310 275 76 23 chr15 78353275 78353446 -7342308 - L1ME3A LINE L1 -221 5949 5770 22 70 0 0 chr15 78354369 78354412 -7341342 + AT_rich Low_complexity Low_complexity 1 43 0 31 102 0 0 chr15 78355516 78355624 -7340130 + GC_rich Low_complexity Low_complexity 1 108 0 186 118 0 0 chr15 78355978 78356012 -7339742 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 23 54 0 0 chr15 78356281 78356318 -7339436 + GC_rich Low_complexity Low_complexity 1 37 0 183 170 0 0 chr15 78356344 78356391 -7339363 + (CG)n Simple_repeat Simple_repeat 1 47 0 278 175 0 62 chr15 78356705 78356802 -7338952 + (CGGGG)n Simple_repeat Simple_repeat 2 92 0 213 39 0 0 chr15 78356890 78356916 -7338838 + (GGA)n Simple_repeat Simple_repeat 3 28 0 38 51 0 0 chr15 78357232 78357291 -7338463 + GC_rich Low_complexity Low_complexity 1 59 0 266 106 21 0 chr15 78357355 78357402 -7338352 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 1900 160 9 3 chr15 78360471 78360802 -7334952 + L1MB7 LINE L1 5847 6179 -5 22 0 0 0 chr15 78363499 78363521 -7332233 + AT_rich Low_complexity Low_complexity 1 22 0 1398 164 109 4 chr15 78363578 78363853 -7331901 - AluJb SINE Alu -8 304 1 1878 138 3 0 chr15 78364128 78364419 -7331335 + AluSx SINE Alu 1 292 -20 691 282 67 0 chr15 78366680 78366875 -7328879 + MIR SINE MIR 28 235 -27 198 121 91 0 chr15 78366998 78367031 -7328723 + MIR SINE MIR 216 251 -11 243 361 110 28 chr15 78368016 78368371 -7327383 + L2 LINE L2 2871 3254 -18 200 340 155 10 chr15 78369182 78369285 -7326469 + L3 LINE CR1 1434 1551 -26 267 298 92 23 chr15 78369568 78369699 -7326055 + MIR SINE MIR 111 250 -12 967 250 9 59 chr15 78369832 78370152 -7325602 - AluSq SINE Alu 0 313 10 181 341 101 31 chr15 78370675 78370804 -7324950 + MIR SINE MIR 111 248 -14 1870 122 6 55 chr15 78370939 78371267 -7324487 - AluSx SINE Alu 0 312 1 367 252 15 89 chr15 78373301 78373369 -7322385 + MIR SINE MIR 93 148 -114 2129 77 6 86 chr15 78373369 78373696 -7322058 + AluSx SINE Alu 1 301 -11 367 252 15 89 chr15 78373696 78373762 -7321992 + MIR SINE MIR 148 217 -45 2193 66 24 0 chr15 78373947 78374235 -7321519 - AluY SINE Alu -15 296 2 4306 167 12 32 chr15 78375083 78375914 -7319840 + L1MB3 LINE L1 5370 6183 0 1523 204 38 35 chr15 78376945 78377318 -7318436 - MLT1A2 LTR MaLR 0 374 1 2139 101 0 16 chr15 78381268 78381576 -7314178 + AluSx SINE Alu 1 303 -9 785 225 25 19 chr15 78381980 78382140 -7313614 - FRAM SINE Alu -1 165 5 210 222 16 79 chr15 78382756 78382819 -7312935 - L2 LINE L2 -5 3267 3209 271 281 229 0 chr15 78383257 78383353 -7312401 + L2 LINE L2 3154 3271 -1 869 302 129 44 chr15 78383638 78383963 -7311791 - L1ME4a LINE L1 -2 6119 5823 2144 119 0 16 chr15 78383963 78384275 -7311479 - AluSx SINE Alu -5 307 1 869 302 129 44 chr15 78384275 78384667 -7311087 - L1ME4a LINE L1 -298 5823 5347 1929 131 6 13 chr15 78384802 78385116 -7310638 - AluSx SINE Alu 0 312 1 2061 99 11 3 chr15 78385138 78385422 -7310332 - AluSg SINE Alu -24 286 1 418 307 83 45 chr15 78385825 78385924 -7309830 - L1ME4a LINE L1 -1662 4484 4390 1711 167 3 7 chr15 78385924 78386223 -7309531 - AluJo SINE Alu -14 298 1 418 307 83 45 chr15 78386223 78386436 -7309318 - L1ME4a LINE L1 -1756 4390 4160 336 277 101 65 chr15 78386447 78386725 -7309029 - MLT1J LTR MaLR 0 511 224 562 354 69 15 chr15 78387065 78387455 -7308299 - L1ME4a LINE L1 -2193 3953 3543 1259 169 0 46 chr15 78387549 78387810 -7307944 - AluJb SINE Alu -62 250 2 1464 158 68 4 chr15 78387908 78388186 -7307568 - AluJo SINE Alu -10 302 7 489 246 108 8 chr15 78388403 78388533 -7307221 + Tigger3(Golem) DNA MER2_type 3 145 -2884 746 223 113 53 chr15 78388709 78389009 -7306745 - L1ME4a LINE L1 -225 5896 5579 250 279 33 0 chr15 78389928 78389989 -7305765 - MIR SINE MIR -118 144 82 299 326 21 14 chr15 78390002 78390146 -7305608 + L2 LINE L2 1760 1904 -1410 322 270 247 48 chr15 78390158 78390599 -7305155 + L2 LINE L2 2035 2563 -751 239 321 0 0 chr15 78390741 78390794 -7304960 + L2 LINE L2 3192 3244 -28 361 109 47 0 chr15 78391204 78391268 -7304486 - Tigger4(Zombi) DNA MER2_type -171 2560 2494 * 1616 176 15 4 chr15 78391259 78391531 -7304223 - Tigger4(Zombi) DNA MER2_type -2456 275 1 1421 174 36 26 chr15 78392462 78392766 -7302988 - AluJo SINE Alu -5 307 1 1461 173 83 7 chr15 78392796 78393074 -7302680 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr15 78393074 78393096 -7302658 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 78393369 78393390 -7302364 + (A)n Simple_repeat Simple_repeat 1 21 0 279 331 58 16 chr15 78393415 78393536 -7302218 + MIR SINE MIR 68 193 -69 2354 67 3 13 chr15 78393785 78394098 -7301656 + AluY SINE Alu 1 310 -1 478 219 301 14 chr15 78394829 78394975 -7300779 - MER5A DNA MER1_type -1 188 1 1461 154 68 71 chr15 78396792 78397091 -7298663 + L1MB2 LINE L1 5818 6116 -55 2212 85 0 0 chr15 78397091 78397385 -7298369 + AluSg SINE Alu 5 298 -12 1939 121 10 0 chr15 78397389 78397679 -7298075 + AluSx SINE Alu 1 293 -19 1461 154 68 71 chr15 78397679 78397725 -7298029 + L1MB2 LINE L1 6119 6167 -4 1072 246 186 38 chr15 78398905 78399384 -7296370 + L3 LINE CR1 422 971 -606 229 325 89 51 chr15 78399595 78399752 -7296002 + L3b LINE CR1 1280 1442 -141 281 322 2 30 chr15 78399817 78399937 -7295817 - MIR SINE MIR -67 141 39 1993 135 0 0 chr15 78401517 78401814 -7293940 + AluSx SINE Alu 1 297 -15 529 323 191 32 chr15 78402984 78404136 -7291618 + L2 LINE L2 1518 2852 -462 225 0 0 0 chr15 78404640 78404665 -7291089 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr15 78406046 78406069 -7289685 + AT_rich Low_complexity Low_complexity 1 23 0 1723 114 37 0 chr15 78406167 78406413 -7289341 + AluSq SINE Alu 1 255 -58 302 304 134 25 chr15 78407350 78407551 -7288203 + MIR SINE MIR 34 256 -6 243 268 73 37 chr15 78408618 78408700 -7287054 + MIR SINE MIR 34 118 -90 379 236 116 99 chr15 78408724 78408966 -7286788 + MER112 DNA MER1_type 3 248 -12 208 311 25 33 chr15 78410601 78410723 -7285031 - MIR SINE MIR -79 183 63 1233 273 178 16 chr15 78410997 78411564 -7284190 + L1MC4a LINE L1 5468 6126 -1682 2012 83 33 4 chr15 78412441 78412743 -7283011 - AluSq SINE Alu 0 314 5 1701 156 0 28 chr15 78413436 78413725 -7282029 - AluJo SINE Alu -23 289 9 262 305 172 0 chr15 78415615 78415743 -7280011 - MIR3 SINE MIR -27 181 32 701 184 0 0 chr15 78415801 78415926 -7279828 + FLAM_C SINE Alu 2 126 -7 1998 138 6 13 chr15 78416038 78416349 -7279405 - AluJb SINE Alu -3 309 1 1112 210 11 48 chr15 78416464 78416736 -7279018 - AluJo SINE Alu -19 293 32 603 290 48 19 chr15 78416745 78417014 -7278740 - L1ME LINE L1 -303 5818 5542 2342 63 13 17 chr15 78417660 78417961 -7277793 + AluY SINE Alu 1 300 -11 200 204 19 56 chr15 78419323 78419377 -7276377 + CT-rich Low_complexity Low_complexity 4 55 0 336 194 65 21 chr15 78421189 78421282 -7274472 + MIR SINE MIR 92 188 -74 1452 152 36 40 chr15 78421604 78421848 -7273906 + MER33 DNA MER1_type 1 245 -2340 2347 102 0 13 chr15 78421848 78422163 -7273591 - AluSx SINE Alu -1 311 1 1452 152 36 40 chr15 78422163 78422221 -7273533 + MER33 DNA MER1_type 245 302 -22 1995 143 64 12 chr15 78422962 78423304 -7272450 - MLT1A1 LTR MaLR -5 360 1 2306 98 0 3 chr15 78423807 78424104 -7271650 - AluSx SINE Alu -16 296 1 1696 183 0 13 chr15 78425556 78425857 -7269897 + AluJb SINE Alu 1 297 -15 201 39 0 0 chr15 78427503 78427529 -7268225 + (TC)n Simple_repeat Simple_repeat 1 26 0 229 280 0 0 chr15 78429137 78429187 -7266567 + (TG)n Simple_repeat Simple_repeat 2 51 0 203 156 0 0 chr15 78432695 78432727 -7263027 + GA-rich Low_complexity Low_complexity 1 32 0 287 288 0 0 chr15 78432815 78432888 -7262866 + MER96 DNA MER1_type? 103 175 0 2751 74 8 3 chr15 78436879 78437232 -7258522 - THE1A LTR MaLR 0 355 1 338 247 134 46 chr15 78437258 78437452 -7258302 - MIR SINE MIR -1 261 51 2366 104 0 3 chr15 78437908 78438216 -7257538 - AluSq SINE Alu -6 307 1 1281 165 161 28 chr15 78439866 78440120 -7255634 - AluJb SINE Alu -24 288 1 253 299 62 0 chr15 78441866 78441963 -7253791 - MLT1K LTR MaLR -16 572 470 2125 128 6 3 chr15 78443238 78443550 -7252204 - AluSq SINE Alu 0 313 1 28 0 0 0 chr15 78444216 78444244 -7251510 + AT_rich Low_complexity Low_complexity 1 28 0 537 205 0 57 chr15 78444858 78444980 -7250774 - FLAM_A SINE Alu -18 115 1 749 245 0 0 chr15 78445029 78445188 -7250566 + FRAM SINE Alu 2 160 -16 1668 144 78 7 chr15 78446260 78446530 -7249224 - AluSx SINE Alu -23 289 1 234 0 0 0 chr15 78447874 78447900 -7247854 + (T)n Simple_repeat Simple_repeat 1 26 0 344 200 32 21 chr15 78449298 78449393 -7246361 - MIR SINE MIR -72 190 95 2070 107 76 0 chr15 78450008 78450298 -7245456 + AluSx SINE Alu 1 312 0 506 268 87 57 chr15 78450418 78451281 -7244473 - L1P LINE L1 -2189 3957 3067 2157 132 0 7 chr15 78451718 78452013 -7243741 - AluSx SINE Alu -19 293 1 335 316 47 19 chr15 78452053 78452268 -7243486 - L1M4 LINE L1 -3657 2489 2269 22 56 0 0 chr15 78452738 78452774 -7242980 + AT_rich Low_complexity Low_complexity 1 36 0 1994 121 7 39 chr15 78454607 78454912 -7240842 + AluSx SINE Alu 1 295 -17 416 296 30 15 chr15 78456366 78456501 -7239253 - L2 LINE L2 0 3272 3136 801 156 7 0 chr15 78456775 78456910 -7238844 - FRAM SINE Alu 0 40 1 21 71 0 0 chr15 78456951 78456993 -7238761 + AT_rich Low_complexity Low_complexity 1 42 0 2195 131 3 6 chr15 78456995 78457308 -7238446 + AluSx SINE Alu 1 312 0 2359 97 0 0 chr15 78457315 78457614 -7238140 + AluSc SINE Alu 1 299 -10 2335 157 11 0 chr15 78459347 78459729 -7236025 - L1MB5 LINE L1 0 6174 5789 1869 127 32 48 chr15 78459858 78460173 -7235581 - AluSx SINE Alu -2 310 1 2273 112 0 0 chr15 78462884 78463180 -7232574 + AluSg SINE Alu 1 296 -14 2182 73 0 31 chr15 78463189 78463511 -7232243 + AluY SINE Alu 3 315 0 1933 140 101 3 chr15 78464784 78465159 -7230595 + L1MA4 LINE L1 5888 6299 -1 351 0 0 0 chr15 78467026 78467065 -7228689 + (TTA)n Simple_repeat Simple_repeat 2 40 0 899 171 20 0 chr15 78467078 78467224 -7228530 - AluJo SINE Alu -44 268 120 1871 132 55 37 chr15 78469046 78469425 -7226329 + L1MB3 LINE L1 5794 6179 -4 454 253 29 47 chr15 78469857 78470027 -7225727 + MER5B DNA MER1_type 12 178 0 659 159 31 31 chr15 78470275 78470438 -7225316 - MER5A DNA MER1_type -26 163 1 33 0 0 0 chr15 78470690 78470723 -7225031 + AT_rich Low_complexity Low_complexity 1 33 0 2139 134 0 3 chr15 78470723 78471036 -7224718 - AluSx SINE Alu 0 312 1 253 226 19 0 chr15 78472964 78473017 -7222737 - MIR3 SINE MIR -46 162 109 561 238 79 6 chr15 78473936 78474100 -7221654 - MIR SINE MIR -10 252 77 22 0 0 0 chr15 78474640 78474662 -7221092 + AT_rich Low_complexity Low_complexity 1 22 0 183 139 0 0 chr15 78474705 78474741 -7221013 + (A)n Simple_repeat Simple_repeat 1 36 0 255 122 0 20 chr15 78474749 78474798 -7220956 - MIR SINE MIR -32 230 183 2073 134 13 7 chr15 78474820 78475127 -7220627 + AluSp SINE Alu 1 309 -4 1049 206 5 32 chr15 78475468 78475687 -7220067 + AluJb SINE Alu 84 296 -16 246 305 66 13 chr15 78475693 78475844 -7219910 + L1M4 LINE L1 4500 4658 -1488 352 207 12 0 chr15 78476555 78476637 -7219117 - FLAM SINE Alu -9 124 42 332 258 90 9 chr15 78477068 78477266 -7218488 - L1MC4a LINE L1 -301 5820 5695 244 247 27 44 chr15 78477184 78477331 -7218423 - L1PA8A LINE L1 -352 5779 5632 * 1839 197 108 2 chr15 78477680 78478086 -7217668 - L1MD1 LINE L1 -17 6225 5777 462 202 54 8 chr15 78478084 78478213 -7217541 - L1MD1 LINE L1 -1615 4531 4397 * 2038 200 21 65 chr15 78478426 78478900 -7216854 - MER74A LTR ERVL -105 453 1 2146 124 0 3 chr15 78479353 78479651 -7216103 + AluSx SINE Alu 1 297 -15 259 341 0 0 chr15 78479966 78480054 -7215700 + L3 LINE CR1 1180 1267 -310 2298 63 11 0 chr15 78480080 78480366 -7215388 - AluY SINE Alu -22 289 1 225 0 0 0 chr15 78480953 78480978 -7214776 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1820 141 25 14 chr15 78480984 78481260 -7214494 - AluJo SINE Alu -33 279 1 2528 55 13 0 chr15 78483102 78483409 -7212345 + AluY SINE Alu 1 311 0 21 36 0 0 chr15 78483537 78483565 -7212189 + AT_rich Low_complexity Low_complexity 1 28 0 1868 147 3 36 chr15 78484966 78485273 -7210481 + AluJo SINE Alu 5 301 -11 198 317 87 39 chr15 78485320 78485424 -7210330 + L2 LINE L2 3147 3255 -17 307 167 117 67 chr15 78486225 78486345 -7209409 - MIR SINE MIR -21 241 116 936 144 0 0 chr15 78486931 78487070 -7208684 - FLAM_C SINE Alu -4 139 1 242 211 23 109 chr15 78487678 78487806 -7207948 + MER21A LTR ERV1 486 602 -329 769 268 42 35 chr15 78487870 78488154 -7207600 + MER21B LTR ERV1 527 812 -51 218 32 32 0 chr15 78488426 78488457 -7207297 + (CA)n Simple_repeat Simple_repeat 1 32 0 1949 103 62 4 chr15 78488953 78489225 -7206529 + AluSx SINE Alu 1 288 -24 252 0 0 0 chr15 78489468 78489496 -7206258 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1711 175 71 0 chr15 78489817 78490143 -7205611 + Tigger3(Golem) DNA MER2_type 1 349 -2680 1975 138 0 0 chr15 78490143 78490450 -7205304 + AluJb SINE Alu 1 307 0 2408 138 92 17 chr15 78490465 78490879 -7204875 + Tigger3(Golem) DNA MER2_type 2584 3028 -1 489 189 257 0 chr15 78494954 78495102 -7200652 + MIR SINE MIR 77 262 0 631 221 156 18 chr15 78495326 78495602 -7200152 + L2 LINE L2 2538 2851 -463 416 293 189 22 chr15 78495636 78495906 -7199848 + L2 LINE L2 2997 3311 -2 398 245 176 0 chr15 78495997 78496156 -7199598 + L2 LINE L2 3022 3208 -105 413 227 42 59 chr15 78497073 78497192 -7198562 - L2 LINE L2 -3 3310 3194 317 314 25 0 chr15 78497412 78497533 -7198221 + L2 LINE L2 3189 3312 -1 2211 96 0 7 chr15 78498238 78498558 -7197196 + AluY SINE Alu 6 311 0 279 0 0 0 chr15 78506055 78506086 -7189668 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 0 0 0 chr15 78506085 78506114 -7189640 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 22 0 0 0 chr15 78507753 78507775 -7187979 + AT_rich Low_complexity Low_complexity 1 22 0 2178 102 3 0 chr15 78509772 78510101 -7185653 + AluSx SINE Alu 2 331 0 318 203 0 0 chr15 78510418 78510477 -7185277 - MLT1A2 LTR MaLR -7 367 309 1090 238 18 29 chr15 78510674 78510951 -7184803 - MLT1A2 LTR MaLR -69 305 32 352 315 73 15 chr15 78511007 78511267 -7184487 - L2 LINE L2 -460 2854 2580 259 178 0 0 chr15 78511271 78511316 -7184438 - MER20 DNA MER1_type -2 217 173 1033 154 13 90 chr15 78511368 78511602 -7184152 - MER20 DNA MER1_type -3 216 1 348 259 21 110 chr15 78511686 78511968 -7183786 - L2 LINE L2 -841 2473 2217 1681 219 97 27 chr15 78511996 78512056 -7183698 - Charlie1b DNA MER1_type -2238 523 469 1793 173 79 12 chr15 78512056 78512398 -7183356 + MLT1A1 LTR MaLR 1 365 0 1681 219 97 27 chr15 78512398 78512821 -7182933 - Charlie1b DNA MER1_type -2292 469 6 22 0 0 0 chr15 78512953 78512975 -7182779 + AT_rich Low_complexity Low_complexity 1 22 0 2301 96 3 19 chr15 78517573 78517887 -7177867 - AluSx SINE Alu -1 311 3 1708 135 53 43 chr15 78518026 78518135 -7177619 + MER2 DNA MER2_type 33 139 -206 2024 129 69 13 chr15 78518135 78518453 -7177301 + MER1B DNA MER1_type 1 336 -1 1708 135 53 43 chr15 78518453 78518647 -7177107 + MER2 DNA MER2_type 139 339 -6 2136 72 0 0 chr15 78520381 78520631 -7175123 - AluSg SINE Alu -60 250 1 1832 138 90 74 chr15 78523246 78523356 -7172398 - MSTB LTR MaLR -29 397 290 2290 114 0 0 chr15 78523356 78523654 -7172100 - AluSx SINE Alu -14 298 1 1832 138 90 74 chr15 78523654 78523933 -7171821 - MSTB LTR MaLR -136 290 2 885 226 88 29 chr15 78524262 78524795 -7170959 - LTR29 LTR ERV1 -10 727 25 210 379 100 7 chr15 78524859 78524999 -7170755 + L2 LINE L2 3034 3186 -86 408 206 0 0 chr15 78527831 78527977 -7167777 + (CA)n Simple_repeat Simple_repeat 2 147 0 1866 213 99 16 chr15 78528952 78529003 -7166751 - L1MD3 LINE L1 -10 7985 7940 1393 177 62 24 chr15 78529003 78529291 -7166463 + AluJo SINE Alu 3 301 -11 1866 213 99 16 chr15 78529291 78529828 -7165926 - L1MD3 LINE L1 -55 7940 7250 826 142 203 93 chr15 78529828 78529986 -7165768 - AluJo SINE Alu -1 311 172 183 42 0 0 chr15 78529986 78530010 -7165744 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1927 104 37 11 chr15 78530010 78530280 -7165474 - AluSc SINE Alu -32 277 1 826 142 203 93 chr15 78530280 78530366 -7165388 - AluJo SINE Alu -139 173 39 461 292 71 0 chr15 78530382 78530536 -7165218 - L1MD3 LINE L1 -764 7231 7067 816 235 94 4 chr15 78531875 78532109 -7163645 - MIR SINE MIR -6 256 2 1271 210 36 25 chr15 78533216 78533416 -7162338 - AluJo SINE Alu -28 284 79 2409 86 0 16 chr15 78533416 78533731 -7162023 - AluSx SINE Alu -2 310 1 1271 210 36 25 chr15 78533731 78533811 -7161943 - AluJo SINE Alu -233 79 1 799 239 91 0 chr15 78534023 78534220 -7161534 + MIR SINE MIR 43 257 -5 45 45 0 0 chr15 78536270 78536336 -7159418 + AT_rich Low_complexity Low_complexity 1 66 0 207 0 0 0 chr15 78537367 78537390 -7158364 + (TG)n Simple_repeat Simple_repeat 2 24 0 786 117 27 25 chr15 78538123 78538355 -7157399 + CT-rich Low_complexity Low_complexity 1 232 0 1917 162 3 0 chr15 78539730 78540026 -7155728 - AluSx SINE Alu -15 297 1 201 253 38 63 chr15 78540150 78540229 -7155525 + MIR SINE MIR 2 78 -184 201 254 42 28 chr15 78540229 78540300 -7155454 + MIR SINE MIR 116 187 -75 277 321 140 23 chr15 78540522 78540890 -7154864 - LTR16B LTR ERVL -2 448 24 1248 270 92 53 chr15 78541656 78542895 -7152859 + L1MC/D LINE L1 4475 5760 -743 221 209 109 55 chr15 78543000 78543110 -7152644 - L2 LINE L2 -275 3038 2923 22 0 0 0 chr15 78545093 78545115 -7150639 + GC_rich Low_complexity Low_complexity 1 22 0 241 298 180 25 chr15 78549102 78549263 -7146491 + MIR SINE MIR 77 262 0 264 276 79 39 chr15 78549472 78549599 -7146155 - L2 LINE L2 0 3272 3141 207 0 0 0 chr15 78549957 78549980 -7145774 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2224 113 0 0 chr15 78549985 78550269 -7145485 - AluSx SINE Alu -28 284 1 1089 156 45 0 chr15 78550330 78550529 -7145225 + MER3 DNA MER1_type 2 209 0 311 352 68 6 chr15 78551994 78552156 -7143598 - MIR SINE MIR -71 191 20 1793 86 17 17 chr15 78552673 78552907 -7142847 - AluSg SINE Alu -19 291 58 256 292 11 0 chr15 78553759 78553848 -7141906 + CT-rich Low_complexity Low_complexity 1 90 0 304 320 33 8 chr15 78554346 78554468 -7141286 + MIR SINE MIR 21 145 -117 2292 219 97 29 chr15 78555538 78556280 -7139474 - L1MC2 LINE L1 0 7808 6186 1703 171 14 3 chr15 78556726 78557012 -7138742 + AluJo SINE Alu 1 289 -23 1403 179 25 25 chr15 78557151 78557436 -7138318 - AluJo SINE Alu -27 285 1 22 35 0 0 chr15 78557516 78557545 -7138209 + AT_rich Low_complexity Low_complexity 1 29 0 315 71 0 0 chr15 78559893 78559935 -7135819 + (GA)n Simple_repeat Simple_repeat 1 42 0 1660 167 50 14 chr15 78560669 78560951 -7134803 + AluSx SINE Alu 1 292 -20 892 121 142 0 chr15 78560954 78561095 -7134659 + AluJb SINE Alu 140 300 -12 578 294 49 16 chr15 78561325 78561570 -7134184 + MIR SINE MIR 5 257 -5 2336 84 3 3 chr15 78562182 78562481 -7133273 - AluSp SINE Alu -10 303 5 372 263 91 105 chr15 78562740 78562839 -7132915 - L2 LINE L2 -57 3256 3157 1061 173 15 5 chr15 78562839 78563036 -7132718 - L1MB3 LINE L1 -7 6176 5978 372 263 91 105 chr15 78563036 78563346 -7132408 - L2 LINE L2 -156 3157 2852 2089 131 60 23 chr15 78564263 78564614 -7131140 - THE1B LTR MaLR 0 364 1 238 286 0 29 chr15 78565425 78565495 -7130259 - MIR SINE MIR -175 87 20 271 283 113 44 chr15 78567299 78567458 -7128296 + MIR3 SINE MIR 23 192 -16 261 139 0 0 chr15 78568073 78568116 -7127638 + (T)n Simple_repeat Simple_repeat 1 43 0 2089 215 51 40 chr15 78569625 78569768 -7125986 + L1MD3 LINE L1 7441 7581 -414 2163 109 7 0 chr15 78569768 78570072 -7125682 + AluSx SINE Alu 1 306 -6 2089 215 51 40 chr15 78570072 78570477 -7125277 + L1MD3 LINE L1 7581 7995 0 1822 152 10 7 chr15 78571074 78571371 -7124383 - AluJo SINE Alu -14 298 1 1883 134 48 0 chr15 78571904 78572196 -7123558 + AluSx SINE Alu 1 306 -6 250 290 45 74 chr15 78572708 78572862 -7122892 - MIR SINE MIR -65 143 39 342 0 0 0 chr15 78572978 78573016 -7122738 + (CA)n Simple_repeat Simple_repeat 1 38 0 399 284 0 34 chr15 78573038 78573186 -7122568 + GA-rich Low_complexity Low_complexity 2 144 0 233 346 58 35 chr15 78573724 78573981 -7121773 + L2 LINE L2 2584 2846 -468 323 244 73 57 chr15 78574192 78574315 -7121439 + L2 LINE L2 3146 3270 -2 1409 221 3 0 chr15 78574461 78574760 -7120994 + AluJo SINE Alu 1 300 -12 3627 130 56 70 chr15 78574800 78575517 -7120237 + L1MB3 LINE L1 5425 6131 -52 1844 153 0 16 chr15 78576186 78576500 -7119254 + AluJb SINE Alu 1 309 -3 279 244 55 94 chr15 78576576 78576703 -7119051 - MIR3 SINE MIR -84 124 3 2079 114 7 0 chr15 78578585 78578875 -7116879 + AluSx SINE Alu 1 292 -20 2716 119 36 71 chr15 78580273 78580579 -7115175 - Tigger3(Golem) DNA MER2_type -1 3028 2713 1467 164 28 28 chr15 78580579 78580865 -7114889 + AluJo SINE Alu 14 299 -13 2355 61 0 3 chr15 78580865 78581161 -7114593 + AluY SINE Alu 1 295 -16 2716 119 36 71 chr15 78581161 78581357 -7114397 - Tigger3(Golem) DNA MER2_type -314 2715 2543 302 330 71 42 chr15 78581485 78581658 -7114096 - L2 LINE L2 -169 3144 2961 2143 120 0 0 chr15 78581658 78581967 -7113787 + AluSg SINE Alu 1 309 -1 302 330 71 42 chr15 78581967 78582032 -7113722 - L2 LINE L2 -352 2961 2899 284 315 185 20 chr15 78582278 78582424 -7113330 + MIR SINE MIR 2 171 -91 2475 195 98 42 chr15 78582940 78583016 -7112738 - MER97b DNA MER1_type? -194 859 789 2099 92 0 4 chr15 78583016 78583327 -7112427 - AluY SINE Alu 0 310 1 2475 195 98 42 chr15 78583327 78584008 -7111746 - MER97b DNA MER1_type? -264 789 59 1638 158 16 42 chr15 78584156 78584467 -7111287 - AluJo SINE Alu -7 305 3 784 193 118 0 chr15 78584491 78584678 -7111076 - L1MB7 LINE L1 -19 6165 5957 22 35 0 0 chr15 78585014 78585043 -7110711 + AT_rich Low_complexity Low_complexity 1 29 0 2027 120 7 3 chr15 78585043 78585352 -7110402 - AluSx SINE Alu -2 310 1 1478 163 10 27 chr15 78585691 78586007 -7109747 - AluJo SINE Alu 0 312 11 267 255 137 19 chr15 78586160 78586321 -7109433 - L1MC4a LINE L1 -1775 6033 5854 305 87 0 0 chr15 78586479 78586525 -7109229 + (A)n Simple_repeat Simple_repeat 1 46 0 2091 104 0 13 chr15 78586525 78586824 -7108930 + AluY SINE Alu 1 295 -16 25 31 0 0 chr15 78587072 78587104 -7108650 + AT_rich Low_complexity Low_complexity 1 32 0 1927 152 27 27 chr15 78587603 78587971 -7107783 + L1MB8 LINE L1 5811 6178 0 394 224 0 0 chr15 78588521 78588588 -7107166 + MER2 DNA MER2_type 1 67 -278 2136 94 0 7 chr15 78589127 78589438 -7106316 - AluSx SINE Alu 0 309 1 278 288 100 35 chr15 78589518 78589726 -7106028 + MIR SINE MIR 38 262 0 242 294 85 46 chr15 78589707 78589860 -7105894 + L3 LINE CR1 799 957 -620 * 315 361 114 29 chr15 78590006 78590322 -7105432 + L3 LINE CR1 1230 1572 -5 285 253 140 33 chr15 78592061 78592211 -7103543 + L2 LINE L2 2213 2378 -936 2013 81 54 20 chr15 78592228 78592524 -7103230 + AluY SINE Alu 1 306 -5 2171 106 0 3 chr15 78593437 78593738 -7102016 - AluSp SINE Alu -13 300 1 240 341 22 43 chr15 78595408 78595546 -7100208 + L2 LINE L2 2624 2758 -556 197 235 0 39 chr15 78595841 78595892 -7099862 + L2 LINE L2 3265 3313 0 252 0 0 0 chr15 78596059 78596087 -7099667 + (TG)n Simple_repeat Simple_repeat 2 29 0 318 290 16 13 chr15 78596094 78596307 -7099447 - MARNA DNA Mariner -51 535 280 1538 250 106 9 chr15 78596361 78596825 -7098929 - MLT1J LTR MaLR 0 511 3 260 329 0 0 chr15 78596954 78597030 -7098724 + L1ME4a LINE L1 5506 5581 -540 337 282 109 35 chr15 78597100 78597434 -7098320 + L1ME4a LINE L1 5714 6119 -2 3390 116 73 2 chr15 78597781 78598298 -7097456 + MER41A LTR ERV1 1 554 0 252 298 49 53 chr15 78598617 78598755 -7096999 - MIR SINE MIR -59 149 35 1632 139 93 0 chr15 78599891 78600171 -7095583 + AluSx SINE Alu 1 306 -6 1368 173 25 14 chr15 78600367 78600644 -7095110 + AluJb SINE Alu 14 293 -19 21 0 0 0 chr15 78600769 78600790 -7094964 + AT_rich Low_complexity Low_complexity 1 21 0 1027 160 11 16 chr15 78601689 78601876 -7093878 - AluJo SINE Alu -4 308 123 1752 183 29 9 chr15 78601893 78602242 -7093512 + L1MD2 LINE L1 5596 5951 -408 969 99 0 0 chr15 78602242 78602373 -7093381 + AluSq/x SINE Alu 1 131 -182 1814 126 65 0 chr15 78602377 78602655 -7093099 + AluSx SINE Alu 1 296 -16 414 0 0 0 chr15 78602780 78602826 -7092928 + (CA)n Simple_repeat Simple_repeat 1 46 0 487 144 52 85 chr15 78602828 78602981 -7092773 + L1MD3 LINE L1 7843 7990 -5 963 179 5 11 chr15 78605120 78605304 -7090450 - FRAM SINE Alu 0 176 1 369 165 240 16 chr15 78606442 78606563 -7089191 - L1ME4a LINE L1 -4 6117 5970 192 282 53 72 chr15 78609209 78609418 -7086336 - L2 LINE L2 -210 3062 2858 631 232 5 88 chr15 78609562 78609756 -7085998 + MER5B DNA MER1_type 1 178 0 248 145 0 30 chr15 78609840 78609895 -7085859 - L1M3 LINE L1 -309 5872 5820 2124 94 7 0 chr15 78609899 78610197 -7085557 - AluSg SINE Alu -10 300 1 1666 187 55 113 chr15 78610978 78611533 -7084221 + L1ME1 LINE L1 5598 6121 -57 2247 80 3 3 chr15 78611533 78611835 -7083919 - AluY SINE Alu -9 302 1 1666 187 55 113 chr15 78611835 78611885 -7083869 + L1ME1 LINE L1 6121 6172 -6 1535 190 3 26 chr15 78612858 78613168 -7082586 + AluJb SINE Alu 1 303 -9 290 357 13 26 chr15 78614506 78614660 -7081094 - MIR3 SINE MIR -21 187 36 726 128 158 24 chr15 78615356 78615520 -7080234 + MER5A DNA MER1_type 4 189 0 2313 112 10 0 chr15 78616735 78617038 -7078716 - AluSx SINE Alu -2 310 5 1949 195 0 24 chr15 78621409 78621783 -7073971 - MLT1A1 LTR MaLR 0 365 1 2283 117 0 0 chr15 78623745 78624045 -7071709 - AluSx SINE Alu -12 300 1 1883 205 25 27 chr15 78625019 78625493 -7070261 + L1MB4 LINE L1 5694 6166 -14 22 80 0 0 chr15 78625499 78625549 -7070205 + AT_rich Low_complexity Low_complexity 1 50 0 761 103 9 0 chr15 78626082 78626189 -7069565 + AluSg SINE Alu 1 108 -202 257 284 37 84 chr15 78630414 78630604 -7065150 + MIR3 SINE MIR 17 197 -11 257 316 25 0 chr15 78632221 78632300 -7063454 - L3 LINE CR1 -16 1561 1481 2274 121 3 3 chr15 78632739 78633046 -7062708 + AluSx SINE Alu 2 308 -4 3442 125 51 22 chr15 78633060 78633707 -7062047 + L1MA8 LINE L1 5620 6285 -6 874 275 20 69 chr15 78634335 78634640 -7061114 - L3b LINE CR1 -190 1393 1104 541 328 53 25 chr15 78634975 78635298 -7060456 + L2 LINE L2 2262 2593 -721 194 346 119 13 chr15 78635517 78635676 -7060078 + L2 LINE L2 2659 2834 -480 294 314 85 7 chr15 78637835 78637988 -7057766 - MIR SINE MIR -39 223 59 720 206 77 0 chr15 78638536 78638691 -7057063 + AluJo SINE Alu 120 286 -26 233 283 0 0 chr15 78640099 78640159 -7055595 + CT-rich Low_complexity Low_complexity 3 62 0 1712 151 66 0 chr15 78640190 78640461 -7055293 - AluJb SINE Alu -23 289 1 721 223 83 73 chr15 78640768 78641069 -7054685 - MER33 DNA MER1_type -20 304 1 22 0 0 0 chr15 78643446 78643468 -7052286 + AT_rich Low_complexity Low_complexity 1 22 0 2340 100 0 0 chr15 78643731 78644021 -7051733 - AluSx SINE Alu -22 290 1 509 286 43 6 chr15 78644168 78644329 -7051425 + MIR3 SINE MIR 26 192 -16 180 368 26 0 chr15 78644952 78645028 -7050726 - MIR SINE MIR -6 256 179 2191 125 0 3 chr15 78647245 78647540 -7048214 - AluSq SINE Alu -19 294 1 369 286 87 10 chr15 78647911 78648117 -7047637 + MIR SINE MIR 35 256 -6 1839 171 0 19 chr15 78649166 78649475 -7046279 - AluJo SINE Alu -9 303 1 292 306 153 37 chr15 78651514 78651945 -7043809 - L3 LINE CR1 -10 1567 1087 275 244 39 39 chr15 78652457 78652535 -7043219 + MIR SINE MIR 69 146 -62 258 105 0 0 chr15 78652836 78652874 -7042880 + (ATG)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr15 78653769 78653790 -7041964 + AT_rich Low_complexity Low_complexity 1 21 0 527 220 54 42 chr15 78654729 78654897 -7040857 + MER5B DNA MER1_type 7 176 -2 270 313 23 46 chr15 78654903 78655034 -7040720 + MER5B DNA MER1_type 2 129 -49 2262 97 28 0 chr15 78656215 78656505 -7039249 - AluSx SINE Alu -13 299 2 1098 215 191 84 chr15 78657159 78657684 -7038070 - MLT1E1 LTR MaLR -62 592 12 209 358 12 25 chr15 78658190 78658271 -7037483 - L3 LINE CR1 -3 1574 1495 1017 229 71 27 chr15 78658278 78658608 -7037146 - MLT1F LTR MaLR 0 542 198 1166 253 40 12 chr15 78658608 78658932 -7036822 - MER58B DNA MER1_type 0 341 9 268 288 147 54 chr15 78658939 78659123 -7036631 - MLT1F LTR MaLR -338 204 4 252 0 0 0 chr15 78659139 78659167 -7036587 + (CA)n Simple_repeat Simple_repeat 2 29 0 516 269 51 46 chr15 78661873 78662048 -7033706 + MIR SINE MIR 58 233 -29 374 248 27 54 chr15 78662197 78662346 -7033408 - MER58B DNA MER1_type 0 341 197 22 0 0 0 chr15 78666064 78666086 -7029668 + AT_rich Low_complexity Low_complexity 1 22 0 230 56 28 0 chr15 78666840 78666876 -7028878 + (TG)n Simple_repeat Simple_repeat 1 37 0 207 114 29 0 chr15 78667144 78667179 -7028575 + T-rich Low_complexity Low_complexity 2 37 0 1976 120 0 3 chr15 78672219 78672503 -7023251 + AluSx SINE Alu 5 287 -25 206 329 59 0 chr15 78672897 78672982 -7022772 - MIR SINE MIR -50 212 123 2182 106 3 6 chr15 78673589 78673900 -7021854 - AluSq SINE Alu -3 310 1 2779 198 52 2 chr15 78674291 78674872 -7020882 + L1MB3 LINE L1 5533 6142 -41 2052 113 17 0 chr15 78676908 78677210 -7018544 - AluSx SINE Alu -2 310 4 1061 119 0 0 chr15 78678235 78678386 -7017368 + AluSg/x SINE Alu 156 306 -6 2166 213 68 34 chr15 78678389 78678939 -7016815 + L1M1 LINE L1 2841 3425 -4140 2073 123 0 0 chr15 78678939 78679265 -7016489 + AluSq SINE Alu 1 326 0 2166 213 68 34 chr15 78679265 78679447 -7016307 + L1M1 LINE L1 3425 3599 -3966 2184 77 0 17 chr15 78679455 78679752 -7016002 + AluY SINE Alu 1 292 -19 6848 187 25 16 chr15 78679852 78680037 -7015717 + L1M1 LINE L1 3423 3605 -3960 2097 117 0 16 chr15 78680037 78680353 -7015401 + AluY SINE Alu 1 311 0 6848 187 25 16 chr15 78680353 78681549 -7014205 + L1M1 LINE L1 3605 4829 -2736 1799 155 13 7 chr15 78681549 78681859 -7013895 + AluJb SINE Alu 1 312 0 6848 187 25 16 chr15 78681859 78682065 -7013689 + L1M1 LINE L1 4829 5032 -2533 2033 103 3 10 chr15 78682065 78682382 -7013372 + AluSq SINE Alu 1 313 0 4007 120 19 40 chr15 78682388 78683048 -7012706 + L1MA4 LINE L1 5612 6258 -42 2196 92 0 3 chr15 78683048 78683343 -7012411 + AluSx SINE Alu 1 294 -18 4007 120 19 40 chr15 78683343 78683382 -7012372 + L1MA4 LINE L1 6258 6296 -4 1320 161 32 57 chr15 78683402 78683718 -7012036 + L1MB3 LINE L1 5876 6183 0 229 235 29 44 chr15 78684361 78684429 -7011325 + MIR SINE MIR 114 180 -82 2608 203 111 13 chr15 78684576 78685349 -7010405 - L1M4 LINE L1 -2884 3262 2414 189 0 0 0 chr15 78686157 78686178 -7009576 + (TA)n Simple_repeat Simple_repeat 2 22 0 2325 80 0 0 chr15 78686178 78686478 -7009276 - AluSc SINE Alu -9 300 1 26 0 0 0 chr15 78686483 78686509 -7009245 + AT_rich Low_complexity Low_complexity 1 26 0 313 248 34 40 chr15 78686636 78686785 -7008969 - MER104 DNA Tc2 -4 176 29 3032 92 4 35 chr15 78686923 78687089 -7008665 + L1PB1 LINE L1 5709 5879 -272 1874 103 4 0 chr15 78687089 78687352 -7008402 - AluSg SINE Alu 0 310 47 3032 92 4 35 chr15 78687352 78687641 -7008113 + L1PB1 LINE L1 5879 6150 -1 2950 199 42 78 chr15 78687843 78688100 -7007654 + L1MC3 LINE L1 6973 7238 -547 1940 135 0 3 chr15 78688100 78688403 -7007351 + AluSx SINE Alu 1 302 -10 2950 199 42 78 chr15 78688403 78688661 -7007093 + L1MC3 LINE L1 7238 7504 -281 2483 42 7 0 chr15 78688661 78688968 -7006786 + AluY SINE Alu 1 309 -2 2950 199 42 78 chr15 78688968 78689295 -7006459 + L1MC3 LINE L1 7504 7785 0 2200 114 0 0 chr15 78690151 78690459 -7005295 - AluSx SINE Alu -4 308 1 22 0 0 0 chr15 78690761 78690783 -7004971 + AT_rich Low_complexity Low_complexity 1 22 0 2131 83 37 3 chr15 78691458 78691758 -7003996 - AluY SINE Alu -1 310 1 2070 106 3 0 chr15 78692704 78693013 -7002741 + AluSx SINE Alu 1 310 0 388 319 43 12 chr15 78693112 78693275 -7002479 + MIR SINE MIR 39 206 -56 1822 253 140 45 chr15 78693583 78694242 -7001512 + MER21B LTR ERV1 18 738 -125 2134 116 3 3 chr15 78694334 78694644 -7001110 + AluSg SINE Alu 1 310 0 324 345 82 22 chr15 78694779 78695046 -7000708 + LTR67 LTR ERVL 120 402 -155 32693 101 21 64 chr15 78695143 78701013 -6994741 + L1PA7 LINE L1 13 5614 -540 1999 57 8 15 chr15 78701013 78701273 -6994481 + L1PA7 LINE L1 5884 6143 -11 2097 110 0 3 chr15 78701434 78701726 -6994028 + AluSc SINE Alu 1 291 -18 355 126 0 12 chr15 78701820 78702051 -6993703 + AluJo SINE Alu 1 298 -4 829 280 104 31 chr15 78702150 78702765 -6992989 - L1MEc LINE L1 -4653 1657 998 1369 140 28 87 chr15 78702806 78702864 -6992890 - L1MB8 LINE L1 -11 6167 6107 2184 90 7 0 chr15 78702864 78703152 -6992602 + AluSx SINE Alu 1 290 -22 1369 140 28 87 chr15 78703152 78703414 -6992340 - L1MB8 LINE L1 -71 6107 5866 314 315 86 17 chr15 78703414 78703716 -6992038 - L1MEc LINE L1 -5138 981 659 387 233 17 22 chr15 78703944 78704124 -6991630 + (TATG)n Simple_repeat Simple_repeat 1 179 0 246 197 49 16 chr15 78704233 78704294 -6991460 + LTR67 LTR ERVL 492 554 -3 568 272 187 0 chr15 78704329 78704515 -6991239 - MIR SINE MIR -19 243 24 479 258 52 81 chr15 78705053 78705301 -6990453 - MIR SINE MIR -1 261 21 2789 217 47 6 chr15 78705926 78706144 -6989610 + L1MC/D LINE L1 4814 5022 -1337 2068 102 17 0 chr15 78706144 78706439 -6989315 + AluSx SINE Alu 1 300 -12 2789 217 47 6 chr15 78706439 78707198 -6988556 + L1MC/D LINE L1 5022 5821 -538 744 86 17 8 chr15 78707197 78707314 -6988440 + L1MB7 LINE L1 5726 5843 -341 * 4385 115 79 75 chr15 78707314 78708272 -6987482 + pTR5 LTR ERV1 743 2020 -418 378 220 36 54 chr15 78708277 78708388 -6987366 + LTR30 LTR ERV1 372 642 -80 855 130 38 0 chr15 78708388 78708519 -6987235 + pTR5 LTR ERV1 79 214 -2224 212 256 90 13 chr15 78708983 78709061 -6986693 - MIR SINE MIR -115 147 64 23 0 0 0 chr15 78710426 78710449 -6985305 + AT_rich Low_complexity Low_complexity 1 23 0 249 109 0 0 chr15 78710910 78710956 -6984798 + (GA)n Simple_repeat Simple_repeat 2 47 0 213 245 38 19 chr15 78711636 78711689 -6984065 - MIR SINE MIR -57 151 98 1804 122 12 44 chr15 78711843 78712162 -6983592 + AluSx SINE Alu 1 309 -3 6631 148 216 22 chr15 78712919 78714342 -6981412 - pTR5 LTR ERV1 0 2438 741 2064 114 3 0 chr15 78714947 78715244 -6980510 - AluSx SINE Alu -14 298 1 377 266 92 12 chr15 78715403 78715694 -6980060 + Charlie7 DNA MER1_type 33 395 -2217 309 331 40 46 chr15 78715711 78715862 -6979892 + L1MEd LINE L1 23 172 -5947 698 300 75 48 chr15 78716122 78717222 -6978532 + L1MEd LINE L1 570 1737 -4573 326 284 92 98 chr15 78717879 78718436 -6977318 + L1MEc LINE L1 969 1604 -4779 649 143 0 0 chr15 78718461 78718566 -6977188 + FLAM_A SINE Alu 38 142 0 438 331 98 23 chr15 78718567 78718833 -6976921 + HAL1b LINE L1 355 640 -708 2354 91 0 10 chr15 78718985 78719292 -6976462 + AluSc SINE Alu 6 309 0 325 321 53 8 chr15 78719582 78719713 -6976041 + L1MC4a LINE L1 6477 6613 -1195 2000 148 0 3 chr15 78719718 78720008 -6975746 + AluSx SINE Alu 1 289 -23 315 49 0 0 chr15 78720074 78720115 -6975639 + (TG)n Simple_repeat Simple_repeat 1 41 0 1824 248 107 48 chr15 78720136 78720971 -6974783 + L1MC5 LINE L1 6637 7520 -441 2345 92 0 0 chr15 78721037 78721348 -6974406 - AluSx SINE Alu 0 311 1 367 311 98 52 chr15 78721381 78721574 -6974180 + L1ME3A LINE L1 5962 6163 -7 1297 248 74 5 chr15 78721888 78722307 -6973447 + MLT1C LTR MaLR 1 448 -19 1143 199 313 11 chr15 78722308 78722675 -6973079 + MLT2B1 LTR ERVL 1 478 -42 345 83 0 0 chr15 78722722 78722770 -6972984 + MLT2B1 LTR ERVL 473 520 0 2049 107 0 0 chr15 78722846 78723107 -6972647 + AluSx SINE Alu 9 269 -43 212 0 0 35 chr15 78723116 78723145 -6972609 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1339 179 40 33 chr15 78723267 78723596 -6972158 + L1MB7 LINE L1 5854 6184 0 1440 187 150 45 chr15 78723604 78723711 -6972043 + L1MD2 LINE L1 5821 5915 -444 2199 136 3 0 chr15 78723711 78724019 -6971735 - AluSx SINE Alu -3 309 1 1598 181 62 4 chr15 78724022 78724298 -6971456 - AluJo SINE Alu -20 292 1 1440 187 150 45 chr15 78724298 78724672 -6971082 + L1MD2 LINE L1 5916 6357 -2 1774 166 10 22 chr15 78726124 78726438 -6969316 + AluJo SINE Alu 1 310 -2 347 83 0 0 chr15 78726441 78726489 -6969265 + Alu SINE Alu 1 48 -255 1819 168 26 16 chr15 78726740 78727049 -6968705 + AluJb SINE Alu 1 312 0 595 260 144 29 chr15 78727063 78727409 -6968345 - LTR16C LTR ERVL -23 468 83 291 351 6 30 chr15 78727679 78727844 -6967910 - L2 LINE L2 -612 2702 2542 251 188 0 0 chr15 78728175 78728223 -6967531 - L2 LINE L2 -1 3271 3224 669 301 108 55 chr15 78728300 78728616 -6967138 - L2 LINE L2 -217 3096 2798 1933 164 3 3 chr15 78728616 78728915 -6966839 - AluJb SINE Alu -13 299 1 669 301 108 55 chr15 78728915 78729220 -6966534 - L2 LINE L2 -515 2798 2376 255 374 77 26 chr15 78729532 78729805 -6965949 + L3 LINE CR1 1249 1535 -42 1033 254 82 66 chr15 78729829 78729864 -6965890 - Charlie7 DNA MER1_type -28 2584 2551 351 0 0 0 chr15 78729864 78729903 -6965851 + (TG)n Simple_repeat Simple_repeat 2 40 0 1033 254 82 66 chr15 78729903 78730049 -6965705 - Charlie7 DNA MER1_type -61 2551 2409 2149 96 7 20 chr15 78730049 78730351 -6965403 - AluSg SINE Alu -12 298 1 1033 254 82 66 chr15 78730351 78730730 -6965024 - Charlie7 DNA MER1_type -203 2409 2005 884 116 12 70 chr15 78730730 78730780 -6964974 - L1MB2 LINE L1 0 6171 6120 2266 81 3 10 chr15 78730780 78731077 -6964677 - AluY SINE Alu -16 295 1 884 116 12 70 chr15 78731077 78731198 -6964556 - L1MB2 LINE L1 -51 6120 6010 1033 254 82 66 chr15 78731198 78731394 -6964360 - Charlie7 DNA MER1_type -607 2005 1814 1194 170 10 0 chr15 78731494 78731688 -6964066 + AluY SINE Alu 116 311 0 683 175 13 59 chr15 78731690 78731870 -6963884 + L1PA12 LINE L1 2713 2886 -4698 2378 97 3 0 chr15 78731870 78732168 -6963586 + AluSg SINE Alu 1 299 -11 683 175 13 59 chr15 78732168 78732181 -6963573 + L1PA12 LINE L1 2886 2898 -4686 2134 132 7 0 chr15 78732573 78732876 -6962878 + AluSx SINE Alu 1 305 -7 34 42 0 0 chr15 78733000 78733048 -6962706 + AT_rich Low_complexity Low_complexity 1 48 0 249 33 0 0 chr15 78733506 78733536 -6962218 + (CA)n Simple_repeat Simple_repeat 1 30 0 1751 138 0 12 chr15 78734987 78735241 -6960513 - AluSx SINE Alu -13 299 49 527 180 57 41 chr15 78735418 78735540 -6960214 + MIR SINE MIR 34 157 -105 2447 179 11 88 chr15 78735540 78735948 -6959806 + Tigger7 DNA MER2_type 1 439 -2048 327 104 0 0 chr15 78735948 78735996 -6959758 + (TA)n Simple_repeat Simple_repeat 2 49 0 2068 123 14 7 chr15 78735996 78736288 -6959466 - AluJb SINE Alu -18 294 1 2447 179 11 88 chr15 78736288 78736448 -6959306 + Tigger7 DNA MER2_type 437 526 -1961 578 106 12 0 chr15 78736444 78736529 -6959225 + Tigger7 DNA MER2_type 2398 2483 -4 * 243 286 24 12 chr15 78736549 78736633 -6959121 + MIR SINE MIR 172 256 -6 2376 97 0 0 chr15 78737342 78737640 -6958114 - AluSx SINE Alu -5 307 10 240 200 0 0 chr15 78737740 78737790 -6957964 + CT-rich Low_complexity Low_complexity 4 53 0 1314 146 18 92 chr15 78738487 78738788 -6956966 - AluJb SINE Alu 0 302 23 1618 148 0 8 chr15 78739553 78739796 -6955958 - AluSc SINE Alu -68 241 1 1766 151 4 0 chr15 78739909 78740168 -6955586 - AluJb SINE Alu -15 297 38 566 196 12 22 chr15 78740186 78740391 -6955363 - MLT1C LTR MaLR 0 467 294 270 0 0 0 chr15 78740393 78740423 -6955331 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 501 228 148 7 chr15 78740625 78740774 -6954980 + MLT1J1 LTR MaLR 1 170 -276 360 329 43 21 chr15 78741320 78741460 -6954294 + MIR3 SINE MIR 4 146 -62 704 249 68 23 chr15 78741564 78741785 -6953969 + MIR SINE MIR 31 261 -1 618 14 0 0 chr15 78742118 78742189 -6953565 + (TTTAG)n Simple_repeat Simple_repeat 3 73 0 1885 161 3 3 chr15 78742189 78742474 -6953280 - AluJb SINE Alu -27 285 1 1087 178 21 76 chr15 78744580 78744758 -6950996 + MER58A DNA MER1_type 2 166 -2254 2042 119 0 7 chr15 78744758 78745089 -6950665 - AluSq SINE Alu 0 329 1 1087 178 21 76 chr15 78745089 78745145 -6950609 + MER58A DNA MER1_type 166 224 0 2522 75 0 3 chr15 78745908 78746214 -6949540 - AluSq SINE Alu -8 305 1 225 255 0 0 chr15 78746314 78746365 -6949389 - MIR SINE MIR -194 68 18 186 43 0 0 chr15 78746467 78746490 -6949264 + (CA)n Simple_repeat Simple_repeat 2 24 0 1087 231 60 18 chr15 78746493 78746775 -6948979 - LTR16C LTR ERVL -2 489 196 2270 108 20 0 chr15 78746877 78747173 -6948581 - AluSp SINE Alu -11 302 1 1181 104 0 0 chr15 78747224 78747378 -6948376 - AluSg/x SINE Alu -5 307 154 287 272 49 42 chr15 78747395 78747523 -6948231 - MIR SINE MIR -62 146 73 348 338 34 7 chr15 78747546 78747694 -6948060 - L2 LINE L2 -5 3267 3116 2238 131 0 3 chr15 78747700 78748013 -6947741 - AluSx SINE Alu 0 312 1 785 223 0 56 chr15 78748013 78748228 -6947526 - MER106A DNA MER1_type -33 203 1 1434 200 175 71 chr15 78749972 78750344 -6945410 - MLT1F1 LTR MaLR 0 567 105 2165 109 28 0 chr15 78750344 78750627 -6945127 - AluSg SINE Alu -19 291 1 1434 200 175 71 chr15 78750627 78750745 -6945009 - MLT1F1 LTR MaLR -462 105 1 313 266 50 93 chr15 78750745 78750884 -6944870 - MIR3 SINE MIR -34 174 42 183 330 58 19 chr15 78750922 78751025 -6944729 - L2 LINE L2 -19 3253 3147 262 280 50 10 chr15 78751141 78751241 -6944513 - L2 LINE L2 -219 3053 2950 2059 124 7 16 chr15 78751783 78752090 -6943664 + AluSx SINE Alu 1 304 -8 293 229 110 18 chr15 78752244 78752353 -6943401 - MER112 DNA MER1_type -131 129 11 1784 124 18 14 chr15 78752365 78752640 -6943114 - AluJo SINE Alu -4 308 33 2104 136 7 0 chr15 78752714 78753009 -6942745 - AluSx SINE Alu -15 297 1 2544 55 0 0 chr15 78753070 78753361 -6942393 - AluY SINE Alu -20 291 1 357 291 57 7 chr15 78753361 78753502 -6942252 - L1ME1 LINE L1 -32 6134 5987 544 248 129 10 chr15 78753504 78753706 -6942048 - L2 LINE L2 -397 2917 2692 766 206 46 36 chr15 78753710 78753977 -6941777 + L1MC4a LINE L1 6419 6589 -1219 639 211 0 18 chr15 78753977 78754143 -6941611 - L1M4 LINE L1 -1585 4561 4399 2131 114 0 69 chr15 78754154 78754487 -6941267 - AluSx SINE Alu -2 310 1 1331 313 80 53 chr15 78754580 78755826 -6939928 + HERV16 LTR ERVL 102 1380 -3616 760 183 152 0 chr15 78755842 78756006 -6939748 - MER5A DNA MER1_type 0 189 1 329 304 10 0 chr15 78756415 78756517 -6939237 + HERV16 LTR ERVL 1952 2054 -2942 383 260 63 16 chr15 78756528 78756655 -6939099 - L2 LINE L2 -1045 2269 2137 257 347 41 0 chr15 78756747 78756845 -6938909 + L2 LINE L2 3204 3305 -8 380 227 55 0 chr15 78757311 78757412 -6938342 - MIR SINE MIR -44 218 112 493 298 60 0 chr15 78757686 78757854 -6937900 + MIR SINE MIR 50 227 -35 543 235 94 0 chr15 78757907 78758056 -6937698 + MER5A DNA MER1_type 16 178 -11 301 245 109 61 chr15 78758054 78758201 -6937553 - MIR SINE MIR -75 187 34 * 476 350 28 11 chr15 78758553 78758733 -6937021 + MER91A DNA MER1_type 3 185 -11 267 267 89 33 chr15 78758733 78758823 -6936931 + MER91 DNA MER1_type 102 190 0 2632 229 85 22 chr15 78760226 78760467 -6935287 + MER63C DNA MER1_type 120 344 -716 1873 169 10 19 chr15 78760467 78760780 -6934974 - AluJb SINE Alu -2 310 1 2632 229 85 22 chr15 78760780 78761301 -6934453 + MER63C DNA MER1_type 344 930 0 242 261 126 27 chr15 78761301 78761402 -6934352 + LTR33 LTR ERVL 101 212 -309 1805 145 29 4 chr15 78764743 78765019 -6930735 - AluJb SINE Alu -29 283 1 300 349 41 0 chr15 78765065 78765211 -6930543 + L2 LINE L2 3116 3267 -5 306 343 90 24 chr15 78765251 78765417 -6930337 + MIR SINE MIR 70 246 -16 369 176 54 14 chr15 78765417 78765491 -6930263 + MER7A DNA MER2_type 1 77 -271 2021 111 7 0 chr15 78765496 78765767 -6929987 + AluSq SINE Alu 1 273 -40 408 157 12 60 chr15 78765767 78765850 -6929904 + AluSp/q SINE Alu 219 297 -16 1023 195 45 45 chr15 78765855 78766122 -6929632 + L1MC2 LINE L1 6073 6339 -5 1629 154 40 0 chr15 78766127 78766400 -6929354 + MER7A DNA MER2_type 65 346 0 22 56 0 0 chr15 78767162 78767198 -6928556 + AT_rich Low_complexity Low_complexity 1 36 0 2298 114 0 0 chr15 78767371 78767679 -6928075 - AluSx SINE Alu -4 308 1 2458 108 100 5 chr15 78767816 78768205 -6927549 + MSTA LTR MaLR 1 426 -2 1919 138 50 3 chr15 78768231 78768528 -6927226 - AluSx SINE Alu 0 312 2 810 236 28 19 chr15 78768707 78768923 -6926831 + MLT1K LTR MaLR 364 581 -7 389 250 186 25 chr15 78769188 78769392 -6926362 + MIR SINE MIR 25 261 -1 343 283 0 9 chr15 78769407 78769513 -6926241 - MIR SINE MIR -17 245 141 199 278 0 19 chr15 78769518 78769572 -6926182 - MIR SINE MIR -37 225 173 216 135 0 0 chr15 78770359 78770396 -6925358 + (T)n Simple_repeat Simple_repeat 1 37 0 1801 62 46 4 chr15 78771212 78771452 -6924302 + AluSc SINE Alu 26 275 -34 308 117 20 7 chr15 78771946 78772008 -6923746 + MLT1I LTR MaLR 339 545 -4 1927 95 29 76 chr15 78772496 78772812 -6922942 - AluSc SINE Alu -8 301 1 2230 93 35 0 chr15 78773728 78774018 -6921736 + AluSq SINE Alu 1 300 -13 213 323 16 0 chr15 78774852 78774914 -6920840 + MIR SINE MIR 2 64 -198 477 271 91 45 chr15 78775481 78775680 -6920074 - MER63A DNA MER1_type 0 210 3 400 331 76 7 chr15 78776125 78776270 -6919484 - L2 LINE L2 0 3272 3118 291 353 56 40 chr15 78776325 78776574 -6919180 - L2 LINE L2 -13 3259 3007 382 217 70 45 chr15 78776728 78776885 -6918869 - L1ME4a LINE L1 -224 5897 5737 396 213 71 31 chr15 78776886 78777013 -6918741 + MIR SINE MIR 16 147 -115 1135 194 65 29 chr15 78777014 78777323 -6918431 + MER2 DNA MER2_type 1 320 -25 2093 87 0 4 chr15 78777352 78777618 -6918136 + AluSg SINE Alu 1 265 -45 321 287 104 9 chr15 78777623 78777738 -6918016 + MIR SINE MIR 137 262 0 282 282 57 8 chr15 78777783 78777907 -6917847 - L1ME4a LINE L1 -440 5681 5552 22 70 0 0 chr15 78778443 78778486 -6917268 + GC_rich Low_complexity Low_complexity 1 43 0 233 307 193 11 chr15 78778785 78778873 -6916881 - L2 LINE L2 0 3272 3169 185 250 71 0 chr15 78778872 78778928 -6916826 + L3 LINE CR1 1492 1551 -26 * 207 194 0 0 chr15 78778934 78778970 -6916784 + MIR SINE MIR 117 152 -110 339 194 0 0 chr15 78778970 78779037 -6916717 + L1MB5 LINE L1 6108 6174 0 2287 115 0 16 chr15 78779300 78779612 -6916142 + AluSx SINE Alu 1 307 -5 227 288 14 27 chr15 78780593 78780666 -6915088 - MIR SINE MIR -105 157 86 2277 110 0 10 chr15 78780686 78780994 -6914760 + AluSq SINE Alu 1 305 -8 230 260 104 0 chr15 78781737 78781814 -6913940 + Charlie8 DNA MER1_type 27 111 -2306 2380 109 0 0 chr15 78781828 78782139 -6913615 - AluSx SINE Alu -1 311 1 398 187 24 89 chr15 78782570 78782638 -6913116 - MIR SINE MIR 0 262 204 2417 89 0 0 chr15 78782638 78782940 -6912814 - AluSq SINE Alu -11 302 1 398 187 24 89 chr15 78782940 78782994 -6912760 - MIR SINE MIR -58 204 148 1158 165 22 40 chr15 78782999 78783223 -6912531 - AluJo SINE Alu -7 305 86 501 277 0 57 chr15 78783226 78783385 -6912369 - MIR SINE MIR -112 150 1 1215 217 66 30 chr15 78783422 78783754 -6912000 - MLT1I LTR MaLR -3 406 63 584 267 31 98 chr15 78783991 78784343 -6911411 + L2 LINE L2 2915 3235 -37 1090 231 131 19 chr15 78784565 78784924 -6910830 - LTR16C LTR ERVL -16 475 77 274 286 61 10 chr15 78785201 78785299 -6910455 - L2 LINE L2 -14 3299 3197 518 255 47 0 chr15 78785352 78785501 -6910253 - MER103 DNA DNA -9 157 2 337 229 28 90 chr15 78785582 78785726 -6910028 + MLT2B3 LTR ERVL 166 300 -254 920 228 79 38 chr15 78785737 78786061 -6909693 + MLT2B1 LTR ERVL 218 520 0 972 175 12 0 chr15 78787155 78787326 -6908428 + MER5B DNA MER1_type 1 173 -5 2151 128 3 0 chr15 78787467 78787764 -6907990 - AluSx SINE Alu -14 298 1 5461 116 35 6 chr15 78787845 78788727 -6907027 - L1PA13 LINE L1 -2 6161 5254 2217 179 0 0 chr15 78788730 78789137 -6906617 - L1PA13 LINE L1 -913 5233 4827 1427 157 0 0 chr15 78789134 78789389 -6906365 + L1PA13 LINE L1 4581 4835 -1311 * 495 296 62 37 chr15 78789436 78789831 -6905923 - L1ME LINE L1 -511 5655 5255 1018 304 96 44 chr15 78789849 78789897 -6905857 - L1ME LINE L1 -913 5233 5189 1115 183 206 8 chr15 78789897 78790149 -6905605 - AluJo SINE Alu 0 302 1 1018 304 96 44 chr15 78790149 78790872 -6904882 - L1ME LINE L1 -957 5189 4422 1436 254 62 32 chr15 78791074 78791640 -6904114 + L1ME3A LINE L1 4537 5125 -1021 2220 128 0 0 chr15 78791640 78791937 -6903817 + AluSx SINE Alu 1 297 -15 1436 254 62 32 chr15 78791937 78792003 -6903751 + L1ME3A LINE L1 5125 5188 -958 7054 174 41 26 chr15 78792004 78793518 -6902236 + L1MB7 LINE L1 3825 5390 -794 2118 145 0 22 chr15 78793518 78793829 -6901925 - AluSx SINE Alu -6 306 3 7054 174 41 26 chr15 78793829 78794617 -6901137 + L1MB7 LINE L1 5390 6165 -19 245 234 0 0 chr15 78794616 78794680 -6901074 + L1ME3A LINE L1 5170 5233 -913 * 2687 39 0 7 chr15 78794726 78795035 -6900719 + AluY SINE Alu 1 307 -4 1514 128 60 24 chr15 78795069 78795319 -6900435 + AluJb SINE Alu 1 259 -53 290 288 44 25 chr15 78795402 78795562 -6900192 + L1ME3A LINE L1 5262 5424 -738 862 239 5 5 chr15 78795740 78795945 -6899809 - L1ME3A LINE L1 -266 5904 5700 325 232 261 42 chr15 78795942 78796020 -6899734 + L1ME3A LINE L1 5869 5929 -241 * 447 19 0 0 chr15 78796020 78796072 -6899682 + (TG)n Simple_repeat Simple_repeat 2 53 0 1701 177 3 0 chr15 78796074 78796356 -6899398 - AluJb SINE Alu -29 283 1 325 232 261 42 chr15 78796356 78796515 -6899239 + L1ME3A LINE L1 5929 6162 -8 2331 113 0 19 chr15 78796942 78797260 -6898494 + AluSx SINE Alu 1 312 0 29 28 0 0 chr15 78798585 78798621 -6897133 + GC_rich Low_complexity Low_complexity 1 36 0 2079 100 6 31 chr15 78800816 78801162 -6894592 - AluSx SINE Alu 0 338 1 623 256 147 5 chr15 78801468 78801659 -6894095 - MIR SINE MIR -14 248 31 384 278 132 35 chr15 78802395 78802539 -6893215 + MIR SINE MIR 15 172 -90 297 224 28 112 chr15 78802551 78802658 -6893096 - L2 LINE L2 -1 3312 3215 763 246 65 18 chr15 78802665 78802972 -6892782 - L2 LINE L2 -375 2938 2563 204 97 0 0 chr15 78803946 78803977 -6891777 + (CATA)n Simple_repeat Simple_repeat 4 34 0 2105 127 6 19 chr15 78804372 78804687 -6891067 + AluSx SINE Alu 1 311 -1 2242 127 0 0 chr15 78805312 78805620 -6890134 - AluSx SINE Alu -4 308 1 248 318 202 0 chr15 78806562 78806710 -6889044 - MIR SINE MIR -15 247 58 1938 146 49 32 chr15 78806710 78807079 -6888675 - THE1C LTR MaLR 0 375 1 248 318 202 0 chr15 78807079 78807103 -6888651 - MIR SINE MIR -204 58 40 263 277 236 10 chr15 78807551 78807746 -6888008 - MIR SINE MIR 0 262 24 2171 126 10 0 chr15 78808022 78808381 -6887373 - AluSx SINE Alu 0 362 1 368 260 79 39 chr15 78808968 78809065 -6886689 - MLT1K LTR MaLR -1 587 482 2350 173 26 17 chr15 78809065 78809288 -6886466 - MSTB LTR MaLR 0 426 196 2267 101 0 29 chr15 78809288 78809595 -6886159 - AluSg SINE Alu -12 298 1 2350 173 26 17 chr15 78809595 78809793 -6885961 - MSTB LTR MaLR -230 196 1 368 260 79 39 chr15 78809793 78809822 -6885932 - MLT1K LTR MaLR -106 482 456 210 155 17 35 chr15 78811271 78811329 -6884425 + A-rich Low_complexity Low_complexity 3 59 0 233 373 39 0 chr15 78811743 78811845 -6883909 - MER5B DNA MER1_type -68 110 5 252 246 213 49 chr15 78811874 78811996 -6883758 + MER5A DNA MER1_type 30 171 -18 237 258 90 22 chr15 78812654 78812743 -6883011 - MIR SINE MIR -122 140 46 260 312 112 0 chr15 78812894 78813019 -6882735 - L2 LINE L2 -249 3064 2926 1999 150 0 10 chr15 78815138 78815444 -6880310 + AluJb SINE Alu 1 303 -9 694 300 91 0 chr15 78815614 78815824 -6879930 - MIR SINE MIR -2 260 32 295 318 58 9 chr15 78817243 78817381 -6878373 + MIR SINE MIR 3 147 -62 342 0 0 0 chr15 78820588 78820626 -6875128 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 537 188 59 0 chr15 78827463 78827564 -6868190 + MER81 DNA DNA 8 114 0 180 0 0 0 chr15 78827794 78827814 -6867940 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1703 180 67 9 chr15 78827932 78828277 -6867477 - MLT1A2 LTR MaLR -8 366 2 2092 121 3 0 chr15 78829874 78830181 -6865573 - AluSx SINE Alu -4 308 1 779 269 80 62 chr15 78831560 78831947 -6863807 + L1ME3A LINE L1 4670 5048 -1114 1984 118 7 3 chr15 78831947 78832234 -6863520 - AluSx SINE Alu -24 288 1 779 269 80 62 chr15 78832234 78832747 -6863007 + L1ME3A LINE L1 5048 5596 -566 234 135 39 19 chr15 78832747 78832817 -6862937 + (TATG)n Simple_repeat Simple_repeat 1 71 0 231 302 0 23 chr15 78832818 78832947 -6862807 + L1ME3A LINE L1 5834 5959 -211 336 271 31 10 chr15 78835359 78835455 -6860299 + L2 LINE L2 3175 3272 0 306 287 78 78 chr15 78836776 78837069 -6858685 - L2 LINE L2 -12 3301 3009 182 103 0 26 chr15 78837123 78837162 -6858592 + (TGG)n Simple_repeat Simple_repeat 2 39 0 291 169 0 0 chr15 78837217 78837288 -6858466 + CT-rich Low_complexity Low_complexity 1 71 0 195 329 24 24 chr15 78837720 78837805 -6857949 - L3 LINE CR1 -1202 375 291 2060 113 10 0 chr15 78838486 78838777 -6856977 - AluSx SINE Alu -18 294 1 2443 57 0 0 chr15 78838791 78839087 -6856667 - AluY SINE Alu -15 296 1 2129 110 0 0 chr15 78839651 78839943 -6855811 + AluSg SINE Alu 1 292 -18 1572 199 105 27 chr15 78839943 78840315 -6855439 + MLT1F1 LTR MaLR 167 567 0 2054 121 0 16 chr15 78841281 78841594 -6854160 + AluSx SINE Alu 5 312 0 759 142 0 0 chr15 78841775 78841888 -6853866 + FLAM_A SINE Alu 20 132 -10 1195 125 0 0 chr15 78842057 78842233 -6853521 - AluSc SINE Alu -7 302 127 717 146 27 0 chr15 78842334 78842444 -6853310 - AluSq/x SINE Alu -199 114 2 2510 47 0 0 chr15 78842459 78842758 -6852996 - AluY SINE Alu -12 299 1 2251 101 0 0 chr15 78843314 78843621 -6852133 + AluSg SINE Alu 1 307 -3 210 286 37 99 chr15 78845480 78845641 -6850113 + L2 LINE L2 2630 2780 -534 1700 182 19 29 chr15 78845644 78846018 -6849736 - MER58D DNA MER1_type -16 370 1 307 43 64 0 chr15 78847058 78847105 -6848649 + AluSq/x SINE Alu 83 132 -170 430 333 35 40 chr15 78847106 78847207 -6848547 + MIR SINE MIR 58 159 -103 2740 130 16 23 chr15 78847207 78847596 -6848158 + MSTA LTR MaLR 1 388 -40 2044 95 23 16 chr15 78847596 78847900 -6847854 - AluSx SINE Alu -6 306 1 2740 130 16 23 chr15 78847900 78847941 -6847813 + MSTA LTR MaLR 388 428 0 430 333 35 40 chr15 78847941 78848037 -6847717 + MIR SINE MIR 159 254 -8 1862 142 10 3 chr15 78848040 78848328 -6847426 - AluSx SINE Alu -22 290 1 353 323 23 23 chr15 78848475 78848605 -6847149 + L2 LINE L2 3141 3270 -2 321 293 118 45 chr15 78848793 78849490 -6846264 + L1M4 LINE L1 2927 3674 -2472 1748 184 99 6 chr15 78849549 78849881 -6845873 + MSTD LTR MaLR 1 363 -33 1671 314 37 28 chr15 78849924 78851030 -6844724 + L1M4 LINE L1 3881 4996 -1150 2466 119 36 0 chr15 78851647 78852009 -6843745 - THE1C LTR MaLR 0 375 1 401 326 42 0 chr15 78852205 78852349 -6843405 - MIR SINE MIR -70 192 43 180 0 0 0 chr15 78852361 78852381 -6843373 + (T)n Simple_repeat Simple_repeat 1 20 0 2110 117 0 0 chr15 78852442 78852741 -6843013 - AluSx SINE Alu -13 299 1 524 234 129 6 chr15 78854125 78854296 -6841458 + MER91A DNA MER1_type 4 195 -1 725 310 143 20 chr15 78854684 78855220 -6840534 - L2 LINE L2 -192 3080 2479 1297 158 5 0 chr15 78855660 78855869 -6839885 - MER2 DNA MER2_type -134 211 2 228 163 0 0 chr15 78855869 78855912 -6839842 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2292 74 3 7 chr15 78855965 78856264 -6839490 + AluSg1 SINE Alu 1 298 -11 273 258 21 21 chr15 78856324 78856417 -6839337 - L1MC4 LINE L1 -1339 6703 6611 251 301 60 24 chr15 78856833 78856916 -6838838 + L2 LINE L2 3187 3272 0 497 306 47 29 chr15 78857601 78857876 -6837878 + L1MEd LINE L1 59 338 -5781 1163 227 186 109 chr15 78857876 78858030 -6837724 + MLT1E2 LTR MaLR 1 142 -512 1625 158 29 41 chr15 78858030 78858368 -6837386 + AluJb SINE Alu 1 312 0 1163 227 186 109 chr15 78858368 78858821 -6836933 + MLT1E2 LTR MaLR 142 654 0 2087 176 22 6 chr15 78858826 78859185 -6836569 + MLT1A1 LTR MaLR 1 365 0 1306 190 9 0 chr15 78859398 78859619 -6836135 - MER58A DNA MER1_type 0 224 2 249 240 0 0 chr15 78859745 78859795 -6835959 + L2 LINE L2 2276 2325 -989 307 284 45 52 chr15 78859858 78859992 -6835762 - L1 LINE L1 -2839 3307 3175 632 288 135 9 chr15 78860104 78860333 -6835421 + MIR SINE MIR 2 259 -3 1997 173 24 23 chr15 78862951 78863534 -6832220 - L1M1 LINE L1 -708 5592 5016 1063 243 17 20 chr15 78863534 78863835 -6831919 - AluJo SINE Alu 0 302 3 1997 173 24 23 chr15 78863835 78863940 -6831814 - L1M1 LINE L1 -1284 5016 4913 1735 170 3 6 chr15 78864379 78864690 -6831064 + AluJb SINE Alu 1 310 -2 307 339 58 8 chr15 78864795 78864916 -6830838 - MIR SINE MIR -109 153 27 1863 149 3 7 chr15 78866057 78866358 -6829396 + AluJb SINE Alu 1 300 -12 193 288 14 68 chr15 78866635 78866708 -6829046 - L2 LINE L2 0 3313 3245 240 339 73 0 chr15 78866790 78866899 -6828855 + L2 LINE L2 588 704 -2610 365 243 54 0 chr15 78867186 78867297 -6828457 - LTR33 LTR ERVL -401 120 4 7772 106 7 1 chr15 78867722 78868757 -6826997 + THE1B-int LTR MaLR 540 1580 0 2286 127 22 19 chr15 78868757 78869120 -6826634 + THE1B LTR MaLR 1 364 0 1268 329 0 78 chr15 78869201 78869520 -6826234 + AluSx SINE Alu 3 296 -6 3467 186 10 41 chr15 78869634 78870149 -6825605 + L1MC1 LINE L1 4525 5055 -1278 2131 117 10 0 chr15 78870149 78870452 -6825302 + AluSp SINE Alu 1 303 -10 3467 186 10 41 chr15 78870452 78871049 -6824705 + L1MC1 LINE L1 5055 5601 -732 2042 144 75 3 chr15 78871049 78871375 -6824379 + L1MC1 LINE L1 5964 6320 -13 2075 73 8 0 chr15 78871403 78871662 -6824092 + AluSx SINE Alu 39 299 -13 314 348 84 17 chr15 78872019 78872315 -6823439 + L2 LINE L2 2431 2746 -568 2354 62 3 7 chr15 78872467 78872759 -6822995 - AluY SINE Alu -20 291 1 627 173 9 27 chr15 78872760 78872870 -6822884 + AluJo/FRAM SINE Alu 190 297 -15 1483 243 73 19 chr15 78872870 78873336 -6822418 + L1ME3A LINE L1 5438 5928 -242 1702 164 55 10 chr15 78873977 78874270 -6821484 - AluJo SINE Alu -6 306 1 294 95 0 0 chr15 78874683 78874725 -6821029 + (CA)n Simple_repeat Simple_repeat 1 42 0 818 158 16 0 chr15 78874998 78875125 -6820629 + AluSq/x SINE Alu 6 134 -178 454 249 97 38 chr15 78875130 78875315 -6820439 + MIR SINE MIR 31 226 -36 2253 112 26 0 chr15 78875590 78875894 -6819860 - AluSx SINE Alu 0 312 1 1508 170 92 23 chr15 78876186 78876492 -6819262 + MLT2C1 LTR ERVL 10 336 -61 1009 128 0 0 chr15 78876494 78876635 -6819119 + FLAM_C SINE Alu 1 141 -2 273 29 0 0 chr15 78876655 78876689 -6819065 + (TG)n Simple_repeat Simple_repeat 2 35 0 328 130 0 0 chr15 78876689 78876735 -6819019 + MLT2C1 LTR ERVL 352 397 0 26 0 0 0 chr15 78877322 78877348 -6818406 + AT_rich Low_complexity Low_complexity 1 26 0 722 289 115 14 chr15 78877450 78877668 -6818086 + MIR SINE MIR 2 241 -21 903 291 85 35 chr15 78877786 78878385 -6817369 + L1ME4a LINE L1 5490 6118 -3 1164 204 52 0 chr15 78879176 78879387 -6816367 + MER58A DNA MER1_type 3 224 0 27 0 0 0 chr15 78880522 78880549 -6815205 + AT_rich Low_complexity Low_complexity 1 27 0 1513 203 12 3 chr15 78880549 78880869 -6814885 - L1MA4 LINE L1 -9 6291 5969 7457 176 24 18 chr15 78880971 78882455 -6813299 - L1 LINE L1 -1780 4366 2875 683 298 91 35 chr15 78882453 78882854 -6812900 + L1ME3A LINE L1 5004 5381 -789 * 2108 106 11 3 chr15 78882854 78883137 -6812617 + AluSx SINE Alu 1 285 -27 683 298 91 35 chr15 78883137 78883635 -6812119 + L1ME3A LINE L1 5381 5956 -214 28 48 0 0 chr15 78884087 78884129 -6811625 + AT_rich Low_complexity Low_complexity 1 42 0 569 302 33 41 chr15 78884854 78885099 -6810655 + MIR SINE MIR 15 257 -5 26 39 0 20 chr15 78885105 78885130 -6810624 + AT_rich Low_complexity Low_complexity 1 25 -25 1621 149 3 71 chr15 78885130 78885438 -6810316 - AluJb SINE Alu -25 287 1 26 39 0 20 chr15 78885438 78885463 -6810291 + AT_rich Low_complexity Low_complexity 25 50 0 204 179 0 89 chr15 78886836 78886892 -6808862 + MIR SINE MIR 47 97 -111 251 257 133 19 chr15 78889306 78889411 -6806343 + MIR SINE MIR 128 244 -18 2333 74 0 29 chr15 78889475 78889784 -6805970 - AluSc SINE Alu -9 300 1 2002 114 0 0 chr15 78889935 78890198 -6805556 - AluSx SINE Alu -15 297 35 683 237 75 44 chr15 78890437 78890665 -6805089 + MIR SINE MIR 5 239 -23 199 264 11 69 chr15 78890685 78890772 -6804982 - MIR SINE MIR -62 200 119 577 222 149 32 chr15 78891143 78891222 -6804532 + Charlie8 DNA MER1_type 30 98 -243 1553 185 26 23 chr15 78891222 78891530 -6804224 + AluJo SINE Alu 1 309 -3 577 222 149 32 chr15 78891530 78891671 -6804083 + Charlie8 DNA MER1_type 98 276 -65 242 214 161 0 chr15 78891755 78891811 -6803943 + Charlie8 DNA MER1_type 1348 1412 -1005 2006 118 0 0 chr15 78893627 78893889 -6801865 + AluSx SINE Alu 3 264 -48 21 0 0 0 chr15 78894783 78894804 -6800950 + AT_rich Low_complexity Low_complexity 1 21 0 220 203 34 34 chr15 78895278 78895337 -6800417 + L3 LINE CR1 1197 1255 -322 411 324 76 22 chr15 78895404 78895629 -6800125 - MIR SINE MIR -6 256 20 253 254 30 147 chr15 78895651 78895848 -6799906 + L3 LINE CR1 1329 1502 -75 252 0 0 0 chr15 78896669 78896697 -6799057 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 360 0 0 0 chr15 78896696 78896736 -6799018 + (CA)n Simple_repeat Simple_repeat 1 40 0 389 250 38 31 chr15 78896817 78896977 -6798777 - L1M LINE L1 -2383 5425 5265 418 243 103 54 chr15 78897076 78897261 -6798493 + HAL1b LINE L1 1155 1348 0 10988 111 38 12 chr15 78897394 78897758 -6797996 + THE1C-int LTR MaLR 1 354 -1226 2184 92 3 55 chr15 78897758 78898083 -6797671 - AluY SINE Alu -3 308 1 10988 111 38 12 chr15 78898083 78899257 -6796497 + THE1C-int LTR MaLR 354 1580 0 2248 114 99 6 chr15 78899257 78899600 -6796154 + THE1C LTR MaLR 1 375 0 189 308 0 19 chr15 78899836 78899888 -6795866 - MIR SINE MIR -181 81 31 268 369 0 0 chr15 78900705 78900789 -6794965 - MIR SINE MIR -150 112 29 5180 162 33 27 chr15 78901021 78901363 -6794391 + L1MB7 LINE L1 4253 4592 -1592 207 0 0 0 chr15 78901363 78901386 -6794368 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5180 162 33 27 chr15 78901386 78902966 -6792788 + L1MB7 LINE L1 4592 6184 0 1171 235 78 114 chr15 78902935 78903670 -6792084 + L1MC4 LINE L1 5173 5399 -747 * 2313 221 67 23 chr15 78903671 78904315 -6791439 + L1MC4 LINE L1 7059 7730 -312 720 160 0 0 chr15 78904341 78904441 -6791313 + AluJ/FLAM SINE Alu 1 100 -212 1274 111 0 0 chr15 78904545 78904707 -6791047 - AluSg/x SINE Alu -20 290 129 395 185 17 135 chr15 78904707 78904824 -6790930 + L1MC4 LINE L1 7814 7905 -137 186 103 0 0 chr15 78904824 78904853 -6790901 + (TATG)n Simple_repeat Simple_repeat 4 32 0 395 185 17 135 chr15 78904853 78904913 -6790841 + L1MC4 LINE L1 7905 7970 -72 1805 169 0 17 chr15 78905047 78905349 -6790405 - AluJb SINE Alu -15 297 1 1629 116 12 31 chr15 78905737 78905995 -6789759 + THE1B LTR MaLR 112 364 0 4138 53 6 0 chr15 78906001 78906509 -6789245 + THE1B-int LTR MaLR 13 523 -1057 397 319 19 10 chr15 78906955 78907162 -6788592 + L1ME3A LINE L1 2798 3006 -3140 328 341 35 6 chr15 78907163 78907336 -6788418 + L1ME3A LINE L1 5055 5232 -914 348 321 86 55 chr15 78907343 78907995 -6787759 + L1ME3A LINE L1 5258 5929 -241 2373 97 0 6 chr15 78907995 78908306 -6787448 - AluSg SINE Alu -1 309 1 217 347 0 0 chr15 78909106 78909178 -6786576 + G-rich Low_complexity Low_complexity 3 74 0 644 283 155 0 chr15 78911161 78911387 -6784367 + MIR SINE MIR 2 262 0 385 272 37 99 chr15 78911472 78911634 -6784120 + MIR3 SINE MIR 25 176 -32 277 318 35 65 chr15 78911723 78911893 -6783861 - MIR SINE MIR -31 231 67 829 308 59 45 chr15 78912078 78912432 -6783322 + MLT1K LTR MaLR 218 576 -12 207 0 0 0 chr15 78912553 78912576 -6783178 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 402 288 34 34 chr15 78912987 78913164 -6782590 - L2 LINE L2 -4 3309 3133 228 67 0 0 chr15 78913305 78913335 -6782419 + (TG)n Simple_repeat Simple_repeat 1 30 0 1203 137 0 44 chr15 78913335 78913540 -6782214 - AluJb SINE Alu -31 281 86 2359 89 0 0 chr15 78913763 78914065 -6781689 + AluY SINE Alu 1 302 -9 775 215 131 65 chr15 78914076 78914262 -6781492 + MLT1G1 LTR MaLR 24 196 -359 2017 151 19 68 chr15 78914262 78914672 -6781082 + MLT1B LTR MaLR 1 390 0 775 215 131 65 chr15 78914672 78914934 -6780820 + MLT1G1 LTR MaLR 196 555 0 1042 282 122 48 chr15 78915267 78915983 -6779771 - L1ME4a LINE L1 -5 6116 5334 209 200 0 0 chr15 78916393 78916428 -6779326 - MIR3 SINE MIR -17 191 157 3748 235 84 8 chr15 78916429 78917482 -6778272 + L1MC4 LINE L1 6778 7947 -95 266 136 0 0 chr15 78917488 78917532 -6778222 + L1MC4 LINE L1 7999 8042 0 514 304 157 25 chr15 78917550 78917988 -6777766 + L2 LINE L2 2698 3205 -67 572 215 0 0 chr15 78918027 78918134 -6777620 - MER105 DNA DNA -97 107 1 182 273 36 0 chr15 78918134 78918189 -6777565 + L2 LINE L2 3215 3271 -1 607 314 58 92 chr15 78918201 78919163 -6776591 + L2 LINE L2 2348 3271 -1 446 221 84 0 chr15 78919290 78919385 -6776369 + L2 LINE L2 3200 3302 -11 225 269 11 43 chr15 78919982 78920075 -6775679 + L1MC4 LINE L1 6614 6703 -1339 189 195 0 0 chr15 78920166 78920207 -6775547 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 3769 243 76 34 chr15 78920316 78922006 -6773748 + L1MEc LINE L1 37 1835 -4561 2834 142 27 23 chr15 78922023 78922543 -6773211 + Tigger3b DNA MER2_type 18 539 -692 1267 46 0 7 chr15 78922544 78922697 -6773057 - AluY SINE Alu -16 295 144 322 243 68 34 chr15 78922886 78923034 -6772720 - L1M4 LINE L1 -900 5246 5094 * 1411 218 25 128 chr15 78923033 78923094 -6772660 + L1ME1 LINE L1 5578 5644 -518 2372 107 0 0 chr15 78923094 78923393 -6772361 - AluSq SINE Alu -14 299 1 1411 218 25 128 chr15 78923393 78923927 -6771827 + L1ME1 LINE L1 5644 6115 -47 2271 105 3 10 chr15 78924065 78924379 -6771375 - AluSx SINE Alu 0 312 1 183 283 94 0 chr15 78924392 78924445 -6771309 - L2 LINE L2 -2 3270 3213 259 189 89 22 chr15 78924921 78925011 -6770743 + MER103 DNA DNA 66 161 -5 2182 125 0 10 chr15 78925313 78925625 -6770129 + AluSg SINE Alu 1 309 -1 23 0 0 0 chr15 78925626 78925649 -6770105 + AT_rich Low_complexity Low_complexity 1 23 0 366 241 90 45 chr15 78925949 78926082 -6769672 - MIR SINE MIR -56 206 68 503 241 41 47 chr15 78926534 78926704 -6769050 + Charlie8 DNA MER1_type 96 264 -2153 295 219 0 27 chr15 78926947 78927020 -6768734 - HsTC2 DNA Tc2 -1822 76 6 1951 95 15 7 chr15 78927145 78927419 -6768335 + AluSp SINE Alu 1 276 -37 257 0 30 0 chr15 78927423 78927456 -6768298 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1724 166 13 13 chr15 78927966 78928273 -6767481 + AluJb SINE Alu 4 310 -2 1873 222 32 6 chr15 78928411 78928915 -6766839 + L1M4 LINE L1 3441 3957 -2189 1080 197 0 0 chr15 78928954 78929187 -6766567 + L1MA8 LINE L1 4986 5218 -928 1063 70 0 0 chr15 78929287 78929416 -6766338 + AluSg/x SINE Alu 166 294 -16 3490 128 52 5 chr15 78929420 78930249 -6765505 + L1MA8 LINE L1 5327 6249 -42 418 231 112 0 chr15 78930245 78930388 -6765366 + L1M4 LINE L1 3272 3430 -2716 * 859 222 25 29 chr15 78930398 78930641 -6765113 + L1M4 LINE L1 3873 4114 -2032 1710 221 56 20 chr15 78930707 78931245 -6764509 + L1M4 LINE L1 4738 5294 -852 2245 74 0 11 chr15 78931269 78931597 -6764157 - AluY SINE Alu 0 325 1 1003 115 0 51 chr15 78931662 78931818 -6763936 - AluSg/x SINE Alu -23 289 142 2591 207 130 7 chr15 78931829 78932644 -6763110 - L1MB7 LINE L1 -9 6175 5261 1150 202 70 43 chr15 78932644 78932821 -6762933 - LTR37A LTR ERV1 0 426 255 2225 111 0 3 chr15 78932821 78933119 -6762635 + AluSq SINE Alu 1 297 -16 1150 202 70 43 chr15 78933119 78933312 -6762442 - LTR37A LTR ERV1 -171 255 46 995 208 22 40 chr15 78933319 78933545 -6762209 + MER58A DNA MER1_type 3 224 0 550 115 39 29 chr15 78933551 78933655 -6762099 - L1MB7 LINE L1 -881 5265 5161 1179 159 0 0 chr15 78933697 78933879 -6761875 - AluSg/x SINE Alu -8 304 123 859 202 35 42 chr15 78934351 78934612 -6761142 - L1ME LINE L1 -555 5611 5351 2780 16 0 0 chr15 78934994 78935298 -6760456 - AluYb8 SINE Alu -14 304 1 5836 121 39 12 chr15 78935798 78936885 -6758869 + L1MA3 LINE L1 5190 6305 0 1837 205 63 34 chr15 78936911 78937531 -6758223 + L1MB7 LINE L1 4006 4643 -1503 2185 129 3 0 chr15 78938846 78939149 -6756605 - AluSx SINE Alu -8 304 1 35 0 0 0 chr15 78939265 78939300 -6756454 + AT_rich Low_complexity Low_complexity 1 35 0 2105 120 0 0 chr15 78940467 78940750 -6755004 - AluSx SINE Alu -29 283 1 2738 182 22 68 chr15 78942017 78942218 -6753536 + L1MB7 LINE L1 5098 5307 -877 2319 92 0 3 chr15 78942218 78942512 -6753242 + AluSg SINE Alu 1 293 -17 2738 182 22 68 chr15 78942512 78942528 -6753226 + L1MB7 LINE L1 5307 5322 -862 2006 101 0 11 chr15 78942528 78942851 -6752903 + AluSg SINE Alu 6 325 0 2738 182 22 68 chr15 78942851 78943644 -6752110 + L1MB7 LINE L1 5322 6061 -123 390 227 83 15 chr15 78943701 78943833 -6751921 + L1MB7 LINE L1 6035 6175 -9 2496 68 0 3 chr15 78945909 78946217 -6749537 - AluY SINE Alu -4 307 1 189 345 21 70 chr15 78946996 78947138 -6748616 + L2 LINE L2 2716 2850 -464 184 351 13 93 chr15 78947489 78947640 -6748114 + L2 LINE L2 2917 3055 -217 347 349 109 38 chr15 78947840 78948187 -6747567 - L1MEd LINE L1 -5631 488 117 922 247 58 4 chr15 78948212 78948471 -6747283 - MLT1C LTR MaLR 0 467 195 2701 119 35 5 chr15 78948529 78948956 -6746798 + MER1A DNA MER1_type 1 440 -89 1256 72 12 18 chr15 78949056 78949223 -6746531 - AluSq SINE Alu -23 290 125 192 77 0 0 chr15 78950998 78951024 -6744730 + (CAG)n Simple_repeat Simple_repeat 1 26 0 429 338 41 15 chr15 78951083 78951423 -6744331 + L1MEc LINE L1 357 705 -6016 2016 156 48 11 chr15 78951433 78951785 -6743969 + MLT1A1 LTR MaLR 1 365 0 1135 252 67 44 chr15 78951800 78952456 -6743298 + L1MEc LINE L1 1371 2103 -4479 462 206 224 0 chr15 78952456 78952563 -6743191 + FLAM_C SINE Alu 1 131 -2 1135 252 67 44 chr15 78952563 78952601 -6743153 + L1MEc LINE L1 2103 2139 -4443 291 28 0 0 chr15 78952609 78952645 -6743109 + (T)n Simple_repeat Simple_repeat 1 36 0 1964 141 3 32 chr15 78952801 78953114 -6742640 + AluJb SINE Alu 1 304 -8 239 293 107 0 chr15 78953356 78953431 -6742323 + L2 LINE L2 3150 3232 -40 247 295 98 54 chr15 78953546 78953658 -6742096 - L2 LINE L2 -2 3311 3195 1013 258 112 8 chr15 78953772 78954129 -6741625 - LTR10D LTR ERV1 0 513 120 218 227 0 15 chr15 78954484 78954550 -6741204 + T-rich Low_complexity Low_complexity 5 69 0 448 328 211 17 chr15 78954565 78955318 -6740436 - L2 LINE L2 -1646 1668 770 206 311 0 0 chr15 78955546 78955591 -6740163 + MIR SINE MIR 104 148 -60 240 191 235 0 chr15 78956022 78956137 -6739617 + L1ME LINE L1 5330 5471 -2337 616 117 64 0 chr15 78956164 78956258 -6739496 + FLAM_A SINE Alu 30 129 -13 328 300 147 0 chr15 78956282 78956452 -6739302 + L1ME LINE L1 5484 5678 -443 520 271 49 7 chr15 78956532 78956676 -6739078 - MIR SINE MIR -1 261 112 22 0 0 0 chr15 78956822 78956844 -6738910 + AT_rich Low_complexity Low_complexity 1 22 0 187 269 164 10 chr15 78957705 78957809 -6737945 - MIR3 SINE MIR -3 205 86 775 128 61 37 chr15 78959166 78959188 -6736566 - MER3 DNA MER1_type -23 186 166 2127 111 31 0 chr15 78959188 78959476 -6736278 - AluSq SINE Alu -16 297 1 775 128 61 37 chr15 78959476 78959617 -6736137 - MER3 DNA MER1_type -43 166 19 4045 170 38 28 chr15 78960042 78961059 -6734695 - L1MB5 LINE L1 -8 6166 5161 2210 117 3 0 chr15 78961059 78961350 -6734404 - AluSc SINE Alu -17 292 1 2071 134 0 7 chr15 78961353 78961672 -6734082 - AluSx SINE Alu 0 312 1 4045 170 38 28 chr15 78961672 78961864 -6733890 - L1MB5 LINE L1 -1014 5160 4947 281 286 50 31 chr15 78963897 78964058 -6731696 + MIR SINE MIR 54 217 -45 269 121 22 99 chr15 78964438 78964529 -6731225 + (CCCCG)n Simple_repeat Simple_repeat 3 86 0 233 284 91 11 chr15 78965600 78965688 -6730066 + MIR SINE MIR 94 188 -74 791 94 0 0 chr15 78965808 78965914 -6729840 - L1PA10 LINE L1 -15 6153 6048 269 239 45 0 chr15 78965927 78965994 -6729760 - L2 LINE L2 -44 3228 3159 2350 81 0 0 chr15 78966165 78966460 -6729294 - AluSx SINE Alu -17 295 1 807 252 153 58 chr15 78966506 78967106 -6728648 - L2 LINE L2 -346 2968 2312 246 323 48 32 chr15 78967659 78967783 -6727971 + MIR SINE MIR 17 142 -120 195 226 38 19 chr15 78967922 78967975 -6727779 - MIR SINE MIR -109 153 100 1911 155 7 7 chr15 78968114 78968424 -6727330 + AluJo SINE Alu 1 310 -2 29 0 0 0 chr15 78968507 78968536 -6727218 + AT_rich Low_complexity Low_complexity 1 29 0 251 257 0 0 chr15 78971538 78971612 -6724142 + GA-rich Low_complexity Low_complexity 2 75 0 209 343 0 0 chr15 78972925 78973033 -6722721 + GA-rich Low_complexity Low_complexity 1 108 0 1461 207 24 10 chr15 78974377 78974667 -6721087 - MLT1A1 LTR MaLR 0 365 72 30 27 0 0 chr15 78974667 78974704 -6721050 + AT_rich Low_complexity Low_complexity 1 37 0 2238 96 3 0 chr15 78974704 78974996 -6720758 - AluSp SINE Alu -20 293 1 319 209 23 47 chr15 78974996 78975082 -6720672 - MLT1A1 LTR MaLR -281 84 1 323 102 20 0 chr15 78975199 78975248 -6720506 + Charlie3 DNA MER1_type 2657 2706 -4 359 286 83 24 chr15 78975885 78976053 -6719701 - HAL1 LINE L1 -105 2402 2225 467 246 14 81 chr15 78976195 78976406 -6719348 - L1MC4 LINE L1 -1 8041 7845 235 187 73 73 chr15 78976579 78976702 -6719052 - L1MC4 LINE L1 -107 7935 7813 * 797 279 48 18 chr15 78976688 78977129 -6718625 - L1M4 LINE L1 -1618 5026 4573 2210 95 11 0 chr15 78977144 78977428 -6718326 - AluSq SINE Alu -24 289 3 249 275 0 0 chr15 78977430 78977499 -6718255 - L1M4 LINE L1 -2058 4586 4518 1387 267 34 24 chr15 78977546 78977938 -6717816 - MLT1E LTR MaLR -4 589 144 1494 172 4 4 chr15 78977945 78978218 -6717536 - L1MB7 LINE L1 -188 6232 5960 1548 258 72 23 chr15 78978220 78978747 -6717007 - L1M4 LINE L1 -5980 562 10 1272 231 47 7 chr15 78978751 78979328 -6716426 - L1MB7 LINE L1 -743 5639 5245 467 295 52 48 chr15 78979356 78979915 -6715839 - L1MB7 LINE L1 -4758 1626 1066 1344 145 0 14 chr15 78979915 78980129 -6715625 - AluJo SINE Alu -17 295 85 867 92 0 0 chr15 78980307 78980427 -6715327 + AluSg/x SINE Alu 183 302 -10 405 186 6 57 chr15 78980433 78980587 -6715167 - L1MD3 LINE L1 -120 7875 5519 541 216 325 5 chr15 78980743 78980937 -6714817 - MIR SINE MIR 0 262 7 220 286 119 0 chr15 78980979 78981063 -6714691 - MER5B DNA MER1_type -79 99 6 216 411 0 0 chr15 78981599 78981767 -6713987 + (CCA)n Simple_repeat Simple_repeat 1 168 0 2184 106 3 3 chr15 78982910 78983222 -6712532 - AluSx SINE Alu 0 312 1 2128 123 0 13 chr15 78985163 78985473 -6710281 - AluSc SINE Alu -1 308 3 2010 145 7 0 chr15 78985478 78985775 -6709979 - AluSx SINE Alu -13 299 1 23 54 0 0 chr15 78986031 78986068 -6709686 + AT_rich Low_complexity Low_complexity 1 37 0 2895 6 0 0 chr15 78986447 78986759 -6708995 + AluYb8 SINE Alu 1 312 -6 2366 104 0 3 chr15 78986771 78987080 -6708674 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr15 78987104 78987126 -6708628 + AT_rich Low_complexity Low_complexity 1 22 0 751 301 47 44 chr15 78990662 78990958 -6704796 - L2 LINE L2 -487 2827 2531 263 286 107 36 chr15 78991025 78991137 -6704617 - MIR SINE MIR -69 139 20 1801 154 3 24 chr15 78991236 78991529 -6704225 + AluJo SINE Alu 11 297 -15 1091 144 57 16 chr15 78991561 78991755 -6703999 - MLT1E LTR MaLR 0 593 392 2432 75 0 0 chr15 78992252 78992544 -6703210 - AluSg SINE Alu -14 296 5 715 250 119 49 chr15 78992742 78993269 -6702485 + L1MC4 LINE L1 6696 7223 -738 228 325 6 44 chr15 78993260 78993420 -6702334 + L1MC4a LINE L1 7239 7392 -416 * 3692 144 19 0 chr15 78993591 78994154 -6701600 - Tigger4(Zombi) DNA MER2_type -2133 598 25 1057 199 16 52 chr15 78994154 78994421 -6701333 - L1MEc LINE L1 -3152 3492 3236 655 218 97 53 chr15 78994421 78994627 -6701127 + MER58C DNA MER1_type 1 215 0 1057 199 16 52 chr15 78994627 78994666 -6701088 - L1MEc LINE L1 -3408 3236 3197 282 292 64 29 chr15 78994750 78994921 -6700833 + L1MEc LINE L1 1948 2124 -4272 1389 148 19 0 chr15 78994939 78995149 -6700605 - Tigger3b DNA MER2_type 0 1231 1018 3232 133 49 6 chr15 78995151 78995684 -6700070 - Tigger3b DNA MER2_type -675 556 1 1719 214 62 66 chr15 78995692 78996396 -6699358 + L1MEc LINE L1 2113 2815 -3400 615 254 51 5 chr15 78996406 78996603 -6699151 - L1MEc LINE L1 -4615 2210 2005 249 244 9 43 chr15 78996802 78996917 -6698837 - L1MEc LINE L1 -6385 157 47 1662 182 29 4 chr15 78997004 78997314 -6698440 + AluJb SINE Alu 1 317 0 24 32 0 0 chr15 78998029 78998060 -6697694 + AT_rich Low_complexity Low_complexity 1 31 0 502 188 107 0 chr15 78998646 78998758 -6696996 + FRAM SINE Alu 41 164 -12 827 219 20 15 chr15 78999672 78999868 -6695886 - AluJo SINE Alu -8 304 108 231 221 171 43 chr15 79000176 79000316 -6695438 + MER103 DNA DNA 8 165 -1 24 0 0 0 chr15 79001036 79001060 -6694694 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr15 79001356 79001391 -6694363 + AT_rich Low_complexity Low_complexity 1 35 0 278 25 0 25 chr15 79002417 79002457 -6693297 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 1955 84 4 15 chr15 79002466 79002728 -6693026 - AluSq SINE Alu -54 259 1 24 32 0 0 chr15 79002753 79002784 -6692970 + AT_rich Low_complexity Low_complexity 1 31 0 383 270 0 10 chr15 79003678 79003778 -6691976 - MARNA DNA Mariner -165 421 323 240 310 108 13 chr15 79003798 79003956 -6691798 + MARNA DNA Mariner 394 566 -20 680 315 98 40 chr15 79004346 79005085 -6690669 - L2 LINE L2 0 3313 2521 290 273 91 8 chr15 79005343 79005464 -6690290 - L2 LINE L2 -1 3271 3141 248 373 92 20 chr15 79006418 79006571 -6689183 - MIR SINE MIR -74 188 25 1176 223 95 12 chr15 79006671 79007007 -6688747 - Tigger7 DNA MER2_type 0 2491 1 2770 209 63 36 chr15 79007552 79008386 -6687368 - L1MEc LINE L1 -1494 4888 4032 528 301 63 40 chr15 79008392 79008694 -6687060 - L2 LINE L2 -480 2834 2526 22 35 0 0 chr15 79008835 79008864 -6686890 + AT_rich Low_complexity Low_complexity 1 29 0 308 264 91 8 chr15 79008958 79009079 -6686675 - L2 LINE L2 -1 3271 3141 3243 206 57 58 chr15 79009364 79009690 -6686064 - L1MEc LINE L1 -2343 4039 3714 2114 113 20 10 chr15 79009690 79009990 -6685764 - AluSx SINE Alu -9 303 1 3243 206 57 58 chr15 79009990 79010860 -6684894 - L1MEc LINE L1 -2668 3714 2844 10861 160 38 16 chr15 79010869 79012867 -6682887 + Ricksha_c DNA DNA 42 2040 -6 1305 249 75 17 chr15 79012867 79013530 -6682224 - L1MEc LINE L1 -3507 2875 2228 620 224 50 0 chr15 79013524 79013685 -6682069 - L1MEc LINE L1 -4874 1510 1342 * 22 35 0 0 chr15 79014972 79015001 -6680753 + AT_rich Low_complexity Low_complexity 1 29 0 1041 200 45 10 chr15 79015026 79015226 -6680528 - MER58C DNA MER1_type 0 215 9 342 0 0 0 chr15 79016915 79016953 -6678801 + (TG)n Simple_repeat Simple_repeat 2 39 0 28 29 0 0 chr15 79017553 79017588 -6678166 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr15 79017656 79017693 -6678061 + AT_rich Low_complexity Low_complexity 1 37 0 352 347 33 42 chr15 79017731 79017944 -6677810 + MIR SINE MIR 11 221 -41 1049 166 0 0 chr15 79018023 79018186 -6677568 + FAM SINE Alu 1 163 -12 727 252 53 68 chr15 79018652 79018918 -6676836 - MIR SINE MIR 0 262 1 183 42 0 0 chr15 79020389 79020413 -6675341 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1978 107 54 0 chr15 79021961 79022241 -6673513 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr15 79022484 79022521 -6673233 + AT_rich Low_complexity Low_complexity 1 37 0 2467 78 0 3 chr15 79023596 79023904 -6671850 - AluSx SINE Alu -5 307 1 361 229 200 49 chr15 79024888 79025078 -6670676 + MIR SINE MIR 34 246 -16 248 250 120 54 chr15 79025082 79025174 -6670580 + L2 LINE L2 3138 3235 -37 421 299 97 24 chr15 79026659 79026866 -6668888 - MIR SINE MIR -7 255 34 337 181 282 60 chr15 79027606 79027755 -6667999 - MIR SINE MIR -77 185 4 602 169 39 0 chr15 79027938 79028068 -6667686 - L1M LINE L1 -912 5400 5266 1363 159 25 97 chr15 79028498 79028664 -6667090 - AluJo SINE Alu -15 297 163 291 54 0 0 chr15 79028664 79028701 -6667053 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1363 159 25 97 chr15 79028701 79028854 -6666900 - AluJo SINE Alu -149 163 1 289 246 31 0 chr15 79028859 79028924 -6666830 - FLAM SINE Alu -10 123 57 551 150 64 29 chr15 79028942 79029082 -6666672 - MER96B DNA MER1_type? -83 334 190 21 0 0 0 chr15 79029297 79029318 -6666436 + AT_rich Low_complexity Low_complexity 1 21 0 4265 207 47 30 chr15 79029424 79029719 -6666035 - L1MA9 LINE L1 -38 6274 5986 2196 67 11 3 chr15 79029719 79030002 -6665752 - AluY SINE Alu -9 302 18 4265 207 47 30 chr15 79030002 79031714 -6664040 - L1MA9 LINE L1 -326 5986 4236 920 267 55 47 chr15 79031860 79032379 -6663375 + L1ME3A LINE L1 4907 5430 -920 2858 10 0 0 chr15 79032379 79032690 -6663064 + AluYb8 SINE Alu 1 311 -7 920 267 55 47 chr15 79032690 79032840 -6662914 + L1ME3A LINE L1 5430 5577 -773 214 273 0 0 chr15 79033081 79033125 -6662629 + L2 LINE L2 3227 3270 -43 1586 176 16 35 chr15 79033308 79033621 -6662133 - AluJb SINE Alu -1 311 5 2402 143 63 44 chr15 79034239 79034715 -6661039 - MER31A LTR ERV1 0 485 1 368 132 26 0 chr15 79035247 79035323 -6660431 - L1MA9 LINE L1 -5 6307 6230 399 344 21 3 chr15 79037098 79037302 -6658452 - L2 LINE L2 -5 3267 3005 225 139 0 0 chr15 79037458 79037494 -6658260 + L1MDb LINE L1 1337 1372 -5037 720 232 17 26 chr15 79037823 79038021 -6657733 - MLT1F LTR MaLR -358 237 1 1200 251 117 39 chr15 79038486 79039456 -6656298 + L1MC/D LINE L1 413 1431 -4649 278 250 121 32 chr15 79039793 79039917 -6655837 + L1ME3A LINE L1 5620 5754 -416 826 228 175 7 chr15 79039918 79040221 -6655533 + L1ME3A LINE L1 5800 6153 -17 26 0 0 0 chr15 79040373 79040399 -6655355 + AT_rich Low_complexity Low_complexity 1 26 0 281 271 23 31 chr15 79040547 79040676 -6655078 + L1MC/D LINE L1 4141 4268 -1812 227 282 12 0 chr15 79041057 79041142 -6654612 + L1MC/D LINE L1 4677 4762 -1318 395 324 95 32 chr15 79041188 79041321 -6654433 + L1MC/D LINE L1 4811 4934 -1170 2085 124 14 0 chr15 79041321 79041612 -6654142 + AluSx SINE Alu 1 295 -17 395 324 95 32 chr15 79041612 79042084 -6653670 + L1MC/D LINE L1 4934 5467 -637 228 156 0 0 chr15 79042257 79042302 -6653452 + L1MC/D LINE L1 5694 5738 -1981 286 327 73 69 chr15 79042640 79042900 -6652854 + L2 LINE L2 2831 3091 -181 191 231 0 0 chr15 79042975 79043014 -6652740 + L2 LINE L2 3224 3262 -10 658 94 0 0 chr15 79044133 79044229 -6651525 - L1MB3 LINE L1 -8 6175 6080 21 0 0 0 chr15 79045440 79045461 -6650293 + AT_rich Low_complexity Low_complexity 1 21 0 672 276 29 0 chr15 79047191 79047361 -6648393 + MIR SINE MIR 88 262 0 1846 148 0 104 chr15 79048617 79048970 -6646784 - MLT1B LTR MaLR -4 386 84 1383 206 91 9 chr15 79048970 79049309 -6646445 - MLT1A2 LTR MaLR -4 370 4 1846 148 0 104 chr15 79049309 79049386 -6646368 - MLT1B LTR MaLR -306 84 1 3844 201 40 29 chr15 79049412 79049788 -6645966 - MER21B LTR ERV1 -11 852 482 1714 189 67 13 chr15 79049788 79050164 -6645590 - MSTD LTR MaLR 0 396 1 3844 201 40 29 chr15 79050164 79050629 -6645125 - MER21B LTR ERV1 -381 482 1 4633 186 115 42 chr15 79050629 79051894 -6643860 - MSTD-int LTR MaLR -13 1358 2 2023 148 61 10 chr15 79051909 79052300 -6643454 - MLT2C2 LTR ERVL -48 416 6 433 216 175 6 chr15 79052597 79052734 -6643020 - MIR SINE MIR -51 157 4 239 322 0 0 chr15 79052886 79052945 -6642809 + (TATG)n Simple_repeat Simple_repeat 1 59 0 212 294 0 15 chr15 79053286 79053354 -6642400 + (TA)n Simple_repeat Simple_repeat 2 68 0 227 159 58 58 chr15 79053364 79053433 -6642321 + L1ME4a LINE L1 5954 6022 -99 28 0 0 0 chr15 79053467 79053495 -6642259 + AT_rich Low_complexity Low_complexity 1 28 0 977 86 43 0 chr15 79053509 79053648 -6642106 + AluSg/x SINE Alu 154 298 -14 205 371 0 0 chr15 79054321 79054383 -6641371 - L2 LINE L2 -7 3265 3204 2557 99 11 16 chr15 79055283 79055658 -6640096 - THE1C LTR MaLR 0 375 3 34 0 0 0 chr15 79055885 79055919 -6639835 + AT_rich Low_complexity Low_complexity 1 34 0 1611 91 68 8 chr15 79055922 79056186 -6639568 - L1MA2 LINE L1 0 6304 6025 409 225 65 7 chr15 79056284 79056422 -6639332 - L1M4 LINE L1 -939 5207 5062 4516 221 46 90 chr15 79056458 79057209 -6638545 - L1M4 LINE L1 -1326 4820 4037 2223 98 25 0 chr15 79057209 79057495 -6638259 - AluY SINE Alu -18 293 1 4516 221 46 90 chr15 79057495 79058881 -6636873 - L1M4 LINE L1 -2109 4037 2778 449 274 32 5 chr15 79058884 79059070 -6636684 - L1M4 LINE L1 -3028 3118 2928 37803 54 6 3 chr15 79059078 79064908 -6630846 - L1PA5 LINE L1 -14 6140 297 567 68 0 0 chr15 79064908 79064981 -6630773 - L1PA5 LINE L1 -6063 83 11 825 177 53 152 chr15 79064989 79065481 -6630273 - L1M4 LINE L1 -3215 2931 2489 807 165 53 45 chr15 79065475 79065718 -6630036 - L1MB8 LINE L1 0 6178 5934 * 670 290 30 21 chr15 79065687 79066015 -6629739 - L1MDa LINE L1 -6191 349 19 * 276 361 81 8 chr15 79066489 79066749 -6629005 - ERVL LTR ERVL -4671 1093 815 585 279 134 44 chr15 79067399 79067832 -6627922 - LTR33 LTR ERVL 0 521 50 2601 23 0 0 chr15 79069589 79069888 -6625866 - AluYa5 SINE Alu -12 299 1 22 0 0 0 chr15 79070291 79070313 -6625441 + AT_rich Low_complexity Low_complexity 1 22 0 2272 81 0 3 chr15 79072371 79072655 -6623099 + AluSx SINE Alu 9 291 -21 5516 205 113 46 chr15 79073217 79075412 -6620342 + L1MB7 LINE L1 140 2677 -4148 859 149 0 22 chr15 79075412 79075546 -6620208 + FLAM_C SINE Alu 3 133 0 5516 205 113 46 chr15 79075546 79075842 -6619912 + L1MB7 LINE L1 2677 2952 -3873 4050 211 122 63 chr15 79075863 79076632 -6619122 + L1MB7 LINE L1 3254 3976 -2668 1580 186 7 20 chr15 79076632 79076927 -6618827 + AluJo SINE Alu 1 291 -21 4050 211 122 63 chr15 79076927 79077876 -6617878 + L1MB7 LINE L1 3976 5074 -1570 3676 172 92 8 chr15 79077847 79078946 -6616808 + L1MB7 LINE L1 5427 6616 -66 * 1905 97 62 0 chr15 79079795 79080076 -6615678 - AluSg SINE Alu 0 318 22 250 277 153 44 chr15 79080981 79081118 -6614636 + MIR SINE MIR 78 229 -33 336 64 0 0 chr15 79081143 79081190 -6614564 + (TG)n Simple_repeat Simple_repeat 1 47 0 * 396 0 0 0 chr15 79081189 79081233 -6614521 + (GA)n Simple_repeat Simple_repeat 1 44 0 553 302 0 0 chr15 79081288 79081447 -6614307 - MER46C DNA MER2_type 0 338 180 229 336 147 7 chr15 79082091 79082234 -6613520 - MIR SINE MIR -90 172 10 532 223 8 8 chr15 79083368 79083489 -6612265 + Tigger7 DNA MER2_type 619 739 -1748 28 0 0 0 chr15 79083511 79083539 -6612215 + AT_rich Low_complexity Low_complexity 1 28 0 2325 77 6 13 chr15 79083563 79083874 -6611880 - AluY SINE Alu -2 309 1 1186 287 63 44 chr15 79083891 79084419 -6611335 - L2 LINE L2 0 3313 2778 5838 164 29 57 chr15 79084802 79085992 -6609762 + MER52A LTR ERV1 599 1755 0 6370 166 35 19 chr15 79086881 79088096 -6607658 + L1M1 LINE L1 19 1542 -6023 261 309 204 30 chr15 79088306 79088507 -6607247 + MIR SINE MIR 21 256 -6 1081 217 8 43 chr15 79088509 79088767 -6606987 + AluJo SINE Alu 41 289 -23 189 196 0 0 chr15 79088941 79088987 -6606767 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 7485 46 0 1 chr15 79089208 79090157 -6605597 + L1PA7 LINE L1 5203 6150 -4 1452 161 37 2 chr15 79090927 79091248 -6604506 + Tigger5 DNA MER2_type 1 2323 0 421 230 148 79 chr15 79091388 79091666 -6604088 - MLT1F1 LTR MaLR -179 388 92 272 273 234 12 chr15 79091833 79092089 -6603665 + LTR50 LTR ERVL 480 792 -3 23606 47 7 5 chr15 79092529 79096346 -6599408 - L1PA8 LINE L1 0 6172 2417 1445 114 5 0 chr15 79096351 79096562 -6599192 - L1PA8 LINE L1 -5493 653 442 4264 133 23 16 chr15 79096842 79097543 -6598211 - L1PA15 LINE L1 0 6165 5460 449 111 63 0 chr15 79097546 79097609 -6598145 + AluS SINE Alu 2 68 -241 433 117 0 0 chr15 79097711 79097771 -6597983 - AluS SINE Alu -250 61 2 2273 113 3 0 chr15 79098424 79098716 -6597038 + AluSq SINE Alu 11 303 -10 192 40 0 0 chr15 79099494 79099519 -6596235 + (TTTAA)n Simple_repeat Simple_repeat 2 26 0 2217 91 0 11 chr15 79099519 79099804 -6595950 - AluSx SINE Alu -30 282 1 23 0 0 0 chr15 79099811 79099834 -6595920 + AT_rich Low_complexity Low_complexity 1 23 0 2347 135 36 14 chr15 79100154 79100510 -6595244 - THE1B LTR MaLR 0 364 1 1652 103 0 5 chr15 79101839 79102062 -6593692 + AluSg/x SINE Alu 85 306 -6 234 381 61 7 chr15 79102207 79102354 -6593400 - L2 LINE L2 -2 3270 3116 396 204 43 0 chr15 79102490 79102583 -6593171 + L1MB7 LINE L1 6058 6154 -30 250 206 55 14 chr15 79102831 79102904 -6592850 + MER20B DNA MER1_type 1 76 -707 216 330 25 68 chr15 79103928 79103999 -6591755 - L2 LINE L2 -6 3266 3200 2506 166 14 20 chr15 79103999 79104487 -6591267 - MER31A LTR ERV1 0 485 1 216 330 25 68 chr15 79104487 79104533 -6591221 - L2 LINE L2 -72 3200 3154 2108 106 3 3 chr15 79105412 79105746 -6590008 + AluSp SINE Alu 1 334 0 193 267 244 15 chr15 79107052 79107187 -6588567 + MIR SINE MIR 22 187 -75 2295 100 0 7 chr15 79108342 79108641 -6587113 + AluSq SINE Alu 1 297 -16 2174 125 0 25 chr15 79108964 79109283 -6586471 + AluSx SINE Alu 1 311 -1 257 281 52 88 chr15 79109685 79109934 -6585820 + MLT1K LTR MaLR 157 396 -192 522 243 176 29 chr15 79110477 79110695 -6585059 + MIR SINE MIR 21 260 -2 2572 72 0 0 chr15 79110808 79111112 -6584642 - AluSc SINE Alu -5 304 1 2392 38 0 21 chr15 79112111 79112423 -6583331 - AluY SINE Alu 0 306 1 2363 101 0 7 chr15 79112423 79112729 -6583025 - AluSq SINE Alu -9 304 1 261 257 69 40 chr15 79112945 79113046 -6582708 - L2 LINE L2 -1 3312 3209 322 278 83 31 chr15 79113274 79113590 -6582164 + MLT1H LTR MaLR 136 536 -13 1719 176 13 8 chr15 79114143 79114518 -6581236 - L1P LINE L1 -979 5167 4791 281 234 123 31 chr15 79115550 79115811 -6579943 - LTR16C LTR ERVL -68 423 139 335 272 136 24 chr15 79115943 79116068 -6579686 + MIR SINE MIR 117 255 -7 215 246 31 138 chr15 79117772 79117902 -6577852 - MIR3 SINE MIR -52 156 41 221 339 0 15 chr15 79118940 79119005 -6576749 + L2 LINE L2 3189 3252 -20 192 257 0 0 chr15 79119037 79119107 -6576647 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 1054 130 0 31 chr15 79119734 79119896 -6575858 + AluSx SINE Alu 1 157 -155 299 247 22 11 chr15 79119948 79120037 -6575717 + (TA)n Simple_repeat Simple_repeat 1 90 0 1893 170 60 20 chr15 79120074 79120475 -6575279 + L1MA7 LINE L1 5637 6053 -238 628 179 0 16 chr15 79120479 79120602 -6575152 - FLAM_C SINE Alu -10 133 13 1040 189 22 0 chr15 79120614 79120841 -6574913 + L1MA7 LINE L1 6056 6287 -4 578 305 67 16 chr15 79121074 79121389 -6574365 + MLT1I LTR MaLR 72 402 -7 2273 108 13 0 chr15 79121722 79122029 -6573725 + AluSp SINE Alu 3 313 0 432 283 28 39 chr15 79122534 79122714 -6573040 - MIR SINE MIR -4 258 81 476 270 122 43 chr15 79123700 79124045 -6571709 - LTR16B LTR ERVL -2 462 91 494 302 37 63 chr15 79125574 79125842 -6569912 + L2 LINE L2 3052 3312 -1 184 268 0 0 chr15 79126123 79126179 -6569575 + MER5A DNA MER1_type 41 96 -93 243 298 96 0 chr15 79127936 79128040 -6567714 + MIR3 SINE MIR 84 197 -11 523 200 10 10 chr15 79130668 79130768 -6564986 - L2 LINE L2 0 3313 3214 305 253 36 0 chr15 79130880 79130963 -6564791 - MER5A DNA MER1_type -80 109 24 * 425 288 50 0 chr15 79130959 79131098 -6564656 + MIR SINE MIR 39 184 -78 192 77 0 0 chr15 79131103 79131129 -6564625 + (T)n Simple_repeat Simple_repeat 1 26 0 364 284 30 41 chr15 79131457 79131644 -6564110 + MIR SINE MIR 1 178 -58 289 280 21 105 chr15 79132081 79132224 -6563530 + MIR3 SINE MIR 41 171 -37 330 193 72 0 chr15 79132372 79132455 -6563299 + MER53 DNA DNA 101 189 0 22 0 0 0 chr15 79132940 79132962 -6562792 + AT_rich Low_complexity Low_complexity 1 22 0 2269 117 0 22 chr15 79134746 79135062 -6560692 - AluSx SINE Alu -3 309 1 2282 126 0 0 chr15 79135581 79135890 -6559864 - AluSx SINE Alu -2 310 2 323 195 241 0 chr15 79135892 79135979 -6559775 - MIR SINE MIR -113 149 42 228 35 0 0 chr15 79137098 79137127 -6558627 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 1737 144 25 14 chr15 79137127 79137404 -6558350 - AluSx SINE Alu -32 280 1 410 264 195 6 chr15 79137410 79137569 -6558185 + MER5A DNA MER1_type 1 189 0 228 311 11 56 chr15 79137495 79137585 -6558169 - MER5A DNA MER1_type -103 86 1 * 274 274 11 21 chr15 79137627 79137722 -6558032 + Charlie4 DNA MER1_type 1865 1958 -3 1516 203 79 9 chr15 79139498 79139838 -6555916 - MLT1B LTR MaLR -26 364 1 2034 94 36 18 chr15 79140081 79140356 -6555398 - AluSx SINE Alu -16 296 17 330 271 246 0 chr15 79140420 79140538 -6555216 - MIR SINE MIR -93 169 23 762 304 72 54 chr15 79140772 79141328 -6554426 + L1MC4a LINE L1 5260 5825 -1983 2117 119 0 18 chr15 79141330 79141661 -6554093 + AluSx SINE Alu 1 326 0 725 152 15 111 chr15 79141863 79142061 -6553693 - MER5A DNA MER1_type -4 185 7 23 33 0 0 chr15 79142106 79142136 -6553618 + AT_rich Low_complexity Low_complexity 1 30 0 368 289 66 43 chr15 79144135 79144346 -6551408 + MLT1J LTR MaLR 237 452 -59 426 287 10 56 chr15 79144889 79145084 -6550670 + MER5A DNA MER1_type 3 188 -1 522 260 2 2 chr15 79145250 79145395 -6550359 + MER5B DNA MER1_type 22 166 -23 710 159 43 7 chr15 79145467 79145605 -6550149 - MER5A DNA MER1_type -46 143 1 368 193 328 31 chr15 79146733 79146925 -6548829 + L2 LINE L2 2223 2471 -843 261 0 0 0 chr15 79146950 79146979 -6548775 + (T)n Simple_repeat Simple_repeat 1 29 0 7037 163 54 71 chr15 79148489 79149657 -6546097 + L1MD1 LINE L1 737 1924 -4616 2305 128 0 3 chr15 79149657 79149969 -6545785 + AluSx SINE Alu 1 311 -1 7037 163 54 71 chr15 79149969 79150417 -6545337 + L1MD1 LINE L1 1924 2318 -4222 2252 105 3 7 chr15 79150417 79150713 -6545041 + AluSq SINE Alu 1 295 -18 7037 163 54 71 chr15 79150713 79150962 -6544792 + L1MD1 LINE L1 2318 2570 -3970 1974 240 62 4 chr15 79150969 79151602 -6544152 - L1PA8 LINE L1 0 6172 5474 829 182 19 8 chr15 79151655 79151846 -6543908 + L1PA11 LINE L1 5662 5860 -314 909 71 0 0 chr15 79152307 79152420 -6543334 + AluY SINE Alu 199 311 0 6037 178 66 33 chr15 79152429 79153770 -6541984 + L1MC3 LINE L1 6399 7784 -1 * 6948 218 49 23 chr15 79153766 79157303 -6538451 + L1MD1 LINE L1 2709 6433 -203 828 117 23 31 chr15 79157306 79157434 -6538320 + FLAM_C SINE Alu 15 141 -2 1079 137 91 0 chr15 79157436 79157633 -6538121 + L1MD1 LINE L1 6422 6636 0 240 289 10 10 chr15 79157649 79157746 -6538008 + L1MC/D LINE L1 5732 5828 -1980 296 280 17 42 chr15 79157987 79158105 -6537649 - MIR SINE MIR -57 151 37 201 338 89 39 chr15 79158377 79158658 -6537096 - L2 LINE L2 -68 3204 2910 942 202 6 11 chr15 79159478 79159661 -6536093 + AluJo SINE Alu 124 305 -7 269 340 209 19 chr15 79159985 79160191 -6535563 - MIR SINE MIR -16 246 2 5800 141 19 19 chr15 79160434 79161233 -6534521 - L1MA8 LINE L1 -3 6288 5486 2401 105 0 0 chr15 79161233 79161538 -6534216 - AluSx SINE Alu -7 305 1 5800 141 19 19 chr15 79161538 79161859 -6533895 - L1MA8 LINE L1 -805 5486 5167 2514 196 49 16 chr15 79162540 79162995 -6532759 + MLT2B2 LTR ERVL 1 478 -37 976 77 32 0 chr15 79162995 79163218 -6532536 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 2514 196 49 16 chr15 79163218 79163250 -6532504 + MLT2B2 LTR ERVL 478 507 -8 1458 222 87 9 chr15 79163255 79163602 -6532152 - MLT1A2 LTR MaLR 0 374 1 2382 89 0 22 chr15 79164353 79164669 -6531085 - AluSg1 SINE Alu 0 309 1 183 260 26 0 chr15 79166707 79166784 -6528970 + L2 LINE L2 2032 2110 -1204 304 277 0 0 chr15 79166974 79167057 -6528697 - MIR SINE MIR -130 132 50 740 238 35 39 chr15 79168668 79168899 -6526855 - MIR SINE MIR 0 262 33 1734 212 91 51 chr15 79169281 79169633 -6526121 - MLT1G LTR MaLR -3 587 204 1611 144 51 110 chr15 79169633 79170043 -6525711 - MLT1B LTR MaLR 0 390 5 1734 212 91 51 chr15 79170043 79170242 -6525512 - MLT1G LTR MaLR -386 204 14 365 365 0 0 chr15 79170249 79170367 -6525387 - MIR SINE MIR -67 141 50 530 266 95 0 chr15 79170391 79170549 -6525205 + MIR SINE MIR 84 256 -6 536 291 38 54 chr15 79171217 79171630 -6524124 + MLT1J2 LTR MaLR 2 406 -3 262 327 93 0 chr15 79172555 79172662 -6523092 - MIR SINE MIR -66 196 80 441 259 62 0 chr15 79172863 79172975 -6522779 + L2 LINE L2 3195 3313 0 1583 209 84 8 chr15 79173511 79173879 -6521875 - MSTD LTR MaLR 0 396 1 693 249 23 12 chr15 79174333 79174506 -6521248 - MER117 DNA MER1_type -21 176 2 503 211 28 126 chr15 79174515 79174613 -6521141 + Charlie8 DNA MER1_type 1 107 -223 2215 107 13 16 chr15 79174613 79174923 -6520831 - AluSg SINE Alu -1 309 1 503 211 28 126 chr15 79174923 79174978 -6520776 + Charlie8 DNA MER1_type 107 124 -206 1555 102 9 0 chr15 79174978 79175194 -6520560 - AluSg/x SINE Alu -21 289 72 503 211 28 126 chr15 79175194 79175286 -6520468 + Charlie8 DNA MER1_type 124 223 -107 666 276 122 23 chr15 79175394 79175615 -6520139 + MIR SINE MIR 20 262 0 1878 129 0 66 chr15 79175847 79176179 -6519575 + AluSx SINE Alu 1 310 -2 191 35 0 35 chr15 79177167 79177196 -6518558 + (GAGAA)n Simple_repeat Simple_repeat 5 32 0 22 0 0 0 chr15 79178063 79178085 -6517669 + AT_rich Low_complexity Low_complexity 1 22 0 1057 184 14 18 chr15 79178570 79178787 -6516967 + L1MB3 LINE L1 5916 6131 -52 711 183 5 86 chr15 79178788 79178974 -6516780 + FAM SINE Alu 1 46 -3 45 0 0 0 chr15 79178979 79179024 -6516730 + AT_rich Low_complexity Low_complexity 1 45 0 1644 88 0 4 chr15 79179024 79179251 -6516503 + AluSq SINE Alu 5 230 -83 275 132 0 0 chr15 79179261 79179314 -6516440 + L1MB4 LINE L1 6126 6178 -2 2384 66 66 3 chr15 79179744 79180062 -6515692 + L1PB1 LINE L1 5807 6144 -7 2512 177 61 2 chr15 79180206 79180312 -6515442 - MLT1D LTR MaLR 0 505 407 2042 117 17 0 chr15 79180312 79180602 -6515152 + AluSx SINE Alu 1 295 -17 2512 177 61 2 chr15 79180602 79180970 -6514784 - MLT1D LTR MaLR -98 407 3 773 270 95 53 chr15 79181038 79181639 -6514115 - L1MEc LINE L1 -4961 1435 810 2027 128 20 0 chr15 79181640 79181946 -6513808 - AluSx SINE Alu 0 312 1 1601 196 34 22 chr15 79182589 79182947 -6512807 - MLT1A1 LTR MaLR 0 365 4 2105 98 7 0 chr15 79184317 79184613 -6511141 - AluY SINE Alu -13 298 1 6518 100 231 90 chr15 79184876 79186362 -6509392 - pTR5 LTR ERV1 0 2438 743 2893 209 103 42 chr15 79187870 79188187 -6507567 - L1ME2 LINE L1 0 6164 5868 2002 128 0 0 chr15 79188187 79188477 -6507277 + AluSx SINE Alu 6 295 -17 2893 209 103 42 chr15 79188477 79189012 -6506742 - L1ME2 LINE L1 -296 5868 5260 884 176 128 24 chr15 79190867 79191071 -6504683 + MLT1F LTR MaLR 148 339 -203 250 344 21 0 chr15 79191107 79191203 -6504551 - MIR3 SINE MIR -46 162 65 2001 125 0 26 chr15 79191272 79191583 -6504171 + AluSx SINE Alu 5 307 -5 583 236 85 54 chr15 79193316 79193708 -6502046 - LTR67 LTR ERVL -13 544 82 230 100 0 0 chr15 79194483 79194513 -6501241 + L1P3 LINE L1 1112 1141 -5320 1727 176 23 0 chr15 79196848 79197150 -6498604 + AluJb SINE Alu 1 309 -3 29 28 0 0 chr15 79197172 79197208 -6498546 + AT_rich Low_complexity Low_complexity 1 36 0 2403 146 56 47 chr15 79197208 79197365 -6498389 + L1PB4 LINE L1 5419 5573 -583 2403 185 43 12 chr15 79197365 79197384 -6498370 + L1PB4 LINE L1 5646 5663 -493 1910 136 7 3 chr15 79197384 79197679 -6498075 + AluSx SINE Alu 1 296 -16 2403 185 43 12 chr15 79197679 79198092 -6497662 + L1PB4 LINE L1 5663 6114 -42 416 87 145 0 chr15 79198092 79198161 -6497593 - MADE1 DNA Mariner 0 80 2 2403 185 43 12 chr15 79198161 79198202 -6497552 + L1PB4 LINE L1 6114 6152 -4 2403 146 56 47 chr15 79198202 79198219 -6497535 + L1PB4 LINE L1 5573 6152 -4 325 268 189 33 chr15 79198295 79198448 -6497306 + MER5A DNA MER1_type 7 183 -6 23 0 0 0 chr15 79198898 79198921 -6496833 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr15 79199777 79199812 -6495942 + AT_rich Low_complexity Low_complexity 1 35 0 442 239 69 65 chr15 79200042 79200542 -6495212 + MLT1K LTR MaLR 128 423 -165 261 155 39 47 chr15 79201496 79201563 -6494191 + MIR SINE MIR 97 167 -41 1892 105 32 41 chr15 79201700 79202015 -6493739 + AluSx SINE Alu 1 312 0 260 257 0 14 chr15 79204990 79205060 -6490694 + LTR33A LTR ERVL 448 516 -7 4602 170 13 10 chr15 79205850 79206649 -6489105 - L1MB5 LINE L1 0 6174 5370 1964 137 0 0 chr15 79206649 79206948 -6488806 - AluSx SINE Alu -13 299 1 4602 170 13 10 chr15 79206948 79206977 -6488777 - L1MB5 LINE L1 -804 5370 5343 335 317 96 55 chr15 79207124 79207436 -6488318 + L2 LINE L2 2982 3306 -7 210 204 102 0 chr15 79207453 79207502 -6488252 + MIR SINE MIR 183 236 -26 2187 232 86 30 chr15 79207518 79208220 -6487534 + MER20B DNA MER1_type 36 776 -7 515 305 53 11 chr15 79208548 79208738 -6487016 + MIR SINE MIR 48 245 -17 2025 90 3 37 chr15 79209040 79209339 -6486415 + AluSx SINE Alu 1 289 -23 782 338 17 51 chr15 79209363 79209715 -6486039 + L2 LINE L2 2933 3272 0 1837 144 0 43 chr15 79210245 79210571 -6485183 - AluJb SINE Alu 0 312 1 1731 148 0 36 chr15 79210603 79210908 -6484846 - AluJo SINE Alu -18 294 1 22 35 0 0 chr15 79210988 79211017 -6484737 + AT_rich Low_complexity Low_complexity 1 29 0 373 183 73 0 chr15 79211565 79211647 -6484107 - L1MB5 LINE L1 -1207 4939 4852 747 207 68 0 chr15 79211650 79211887 -6483867 - L1MB5 LINE L1 -3103 3043 2791 1931 113 32 0 chr15 79211897 79212179 -6483575 + AluSx SINE Alu 1 291 -21 1236 244 13 3 chr15 79212181 79212489 -6483265 - L1MB5 LINE L1 -3537 2609 2299 1992 195 32 27 chr15 79212497 79212969 -6482785 - MER68 LTR ERV1 -13 549 1 480 238 61 14 chr15 79212969 79213116 -6482638 - L1MEc LINE L1 -3985 2411 2258 6866 117 5 22 chr15 79213116 79214543 -6481211 + L1MA4A LINE L1 4891 6294 -9 271 208 115 31 chr15 79214617 79214747 -6481007 - L1MEc LINE L1 -4224 2172 2032 204 200 0 0 chr15 79214748 79214793 -6480961 + (TA)n Simple_repeat Simple_repeat 2 46 0 747 176 58 29 chr15 79214805 79215010 -6480744 - L1MEc LINE L1 -4352 2044 1834 1893 136 0 16 chr15 79215010 79215348 -6480406 + AluSq SINE Alu 1 313 0 394 105 0 0 chr15 79216276 79216333 -6479421 - FLAM SINE Alu -2 131 75 214 255 20 0 chr15 79266750 79266801 -6428953 + (TG)n Simple_repeat Simple_repeat 2 53 0 1044 192 57 13 chr15 79266842 79267071 -6428683 + MIR SINE MIR 23 261 -1 500 249 33 8 chr15 79267234 79267376 -6428378 - MLT1I LTR MaLR 0 428 280 255 203 0 0 chr15 79268218 79268277 -6427477 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr15 79269558 79269581 -6426173 + GC_rich Low_complexity Low_complexity 1 23 0 313 240 82 27 chr15 79269875 79270021 -6425733 + L1ME4a LINE L1 5959 6112 -9 398 228 39 31 chr15 79270198 79270325 -6425429 + MIR3 SINE MIR 14 141 -67 1452 91 30 0 chr15 79270910 79271108 -6424646 + AluSq SINE Alu 1 204 -109 466 303 25 10 chr15 79271209 79271449 -6424305 + MLT1J LTR MaLR 192 478 -33 684 195 0 0 chr15 79271636 79271759 -6423995 + FLAM_A SINE Alu 10 132 -10 210 287 10 89 chr15 79271990 79272027 -6423727 + MIR SINE MIR 164 202 -60 815 256 104 19 chr15 79272027 79272402 -6423352 - MLT1I LTR MaLR -2 407 1 210 287 10 89 chr15 79272402 79272465 -6423289 + MIR SINE MIR 202 256 -6 601 300 64 32 chr15 79272496 79272660 -6423094 - L2 LINE L2 -69 3244 3087 180 111 0 0 chr15 79272660 79272687 -6423067 + (TG)n Simple_repeat Simple_repeat 1 27 0 601 300 64 32 chr15 79272687 79272971 -6422783 - L2 LINE L2 -226 3087 2778 2210 121 0 13 chr15 79273557 79273871 -6421883 + AluSx SINE Alu 1 310 -2 6246 79 5 46 chr15 79274797 79276016 -6419738 - L1PA7 LINE L1 0 6154 4987 1981 130 10 122 chr15 79277629 79278021 -6417733 - Tigger3(Golem) DNA MER2_type 0 3029 1 1428 162 12 0 chr15 79278133 79278386 -6417368 + L1MB8 LINE L1 5655 5910 -268 451 36 0 0 chr15 79278493 79278549 -6417205 - L1P LINE L1 -1220 4926 4871 720 204 103 67 chr15 79278653 79279011 -6416743 + LTR37A LTR ERV1 34 404 -22 213 315 54 39 chr15 79279037 79279167 -6416587 + L2 LINE L2 2275 2406 -908 33 73 0 0 chr15 79280279 79280347 -6415407 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr15 79280370 79280391 -6415363 + AT_rich Low_complexity Low_complexity 1 21 0 1082 201 54 59 chr15 79281869 79282223 -6413531 + LTR37A LTR ERV1 27 378 -48 2385 49 7 13 chr15 79282250 79282578 -6413176 + AluY SINE Alu 1 311 0 2194 126 0 3 chr15 79284950 79285259 -6410495 + AluSx SINE Alu 1 308 -4 603 279 99 10 chr15 79285693 79285894 -6409860 + MIR SINE MIR 44 262 0 352 327 99 55 chr15 79286165 79286871 -6408883 + L2 LINE L2 2536 3276 -37 836 148 8 0 chr15 79286961 79287089 -6408665 + FLAM_C SINE Alu 1 129 -4 464 322 65 20 chr15 79287120 79287319 -6408435 - MIR SINE MIR -5 257 50 283 303 27 80 chr15 79288027 79288215 -6407539 + MER5B DNA MER1_type 1 178 0 296 211 39 78 chr15 79288355 79288483 -6407271 - Charlie8 DNA MER1_type -1955 462 340 240 191 103 15 chr15 79288527 79288595 -6407159 - MER94 DNA DNA -35 99 26 524 237 167 40 chr15 79288623 79288821 -6406933 - AluJo SINE Alu -9 303 81 258 174 0 0 chr15 79288872 79288918 -6406836 - L1MB7 LINE L1 -30 6154 6109 1916 117 7 17 chr15 79288918 79289218 -6406536 - AluY SINE Alu -14 297 1 23 0 0 0 chr15 79289575 79289598 -6406156 + AT_rich Low_complexity Low_complexity 1 23 0 408 211 168 37 chr15 79290471 79290632 -6405122 - MLT1L LTR MaLR -10 605 424 1259 198 47 123 chr15 79291161 79291738 -6404016 + L1MC4 LINE L1 7510 8042 0 428 299 75 40 chr15 79292230 79292431 -6403323 + MIR SINE MIR 2 209 -53 250 274 0 16 chr15 79292725 79292787 -6402967 - MIR SINE MIR -110 98 38 719 264 39 35 chr15 79293079 79293310 -6402444 - L1ME LINE L1 -399 5754 5523 308 270 101 7 chr15 79293314 79293462 -6402292 - L1ME LINE L1 -731 5416 5255 26 30 0 0 chr15 79293462 79293495 -6402259 + AT_rich Low_complexity Low_complexity 1 33 0 1015 262 108 42 chr15 79293590 79294212 -6401542 - L1ME LINE L1 -977 5152 4490 1102 265 88 30 chr15 79294276 79294672 -6401082 - MLT1J2 LTR MaLR 0 450 32 632 86 0 0 chr15 79294697 79294790 -6400964 + AluSp/q SINE Alu 211 303 -10 479 321 41 12 chr15 79294824 79295070 -6400684 - L1ME LINE L1 -2395 3734 3482 300 289 11 132 chr15 79295220 79295410 -6400344 - MIR3 SINE MIR -23 185 19 558 295 77 43 chr15 79296303 79297055 -6398699 - L1MEd LINE L1 -4862 1257 580 567 261 18 6 chr15 79297914 79298079 -6397675 - MER74A LTR ERVL -80 478 312 * 670 158 12 109 chr15 79298075 79298240 -6397514 - MER74B LTR ERVL -472 150 2 2000 232 140 90 chr15 79298269 79298569 -6397185 - L1MEc LINE L1 -4841 1400 1117 1746 159 14 0 chr15 79298569 79298846 -6396908 - AluSx SINE Alu -31 281 1 2000 232 140 90 chr15 79298846 79299871 -6395883 - L1MEc LINE L1 -5124 1117 39 561 302 24 14 chr15 79300197 79300409 -6395345 + L2 LINE L2 427 640 -2674 890 299 113 13 chr15 79300585 79301044 -6394710 - L2 LINE L2 -1607 1707 1203 846 139 8 0 chr15 79301131 79301260 -6394494 - FLAM_C SINE Alu -3 130 1 226 314 76 5 chr15 79301294 79301479 -6394275 + L1M4 LINE L1 4972 5169 -977 288 211 67 0 chr15 79301530 79301620 -6394134 + L1M LINE L1 5256 5351 -2457 1150 258 103 35 chr15 79301763 79302036 -6393718 - L1MEc LINE L1 -3148 3067 2814 1764 157 34 7 chr15 79302036 79302206 -6393548 - AluSx SINE Alu -11 301 118 315 0 0 0 chr15 79302206 79302241 -6393513 + (TG)n Simple_repeat Simple_repeat 2 36 0 1764 157 34 7 chr15 79302241 79302363 -6393391 - AluSx SINE Alu -194 118 1 1150 258 103 35 chr15 79302363 79302654 -6393100 - L1MEc LINE L1 -3401 2814 2465 806 276 143 39 chr15 79302686 79303552 -6392202 - L1MEc LINE L1 -4864 1532 577 1796 164 0 7 chr15 79303620 79303912 -6391842 - AluSx SINE Alu -22 290 1 604 208 20 86 chr15 79303917 79304114 -6391640 - MLT1E2 LTR MaLR -442 184 1 1514 157 4 4 chr15 79304352 79304594 -6391160 + AluJb SINE Alu 1 242 -70 1137 292 129 12 chr15 79304628 79305770 -6389984 + L1ME3A LINE L1 4672 5951 -219 2199 101 3 7 chr15 79307284 79307580 -6388174 + AluSq SINE Alu 4 298 -15 311 350 71 33 chr15 79307675 79307858 -6387896 - MER91A DNA MER1_type -6 190 1 25 31 0 0 chr15 79308499 79308531 -6387223 + AT_rich Low_complexity Low_complexity 1 32 0 897 198 19 5 chr15 79308796 79309008 -6386746 + L1MB7 LINE L1 4339 4553 -1593 1375 177 4 8 chr15 79309113 79309378 -6386376 + L1MB7 LINE L1 5905 6168 -16 1314 185 16 4 chr15 79310812 79311055 -6384699 - L1M4 LINE L1 -1163 4983 4738 573 188 181 7 chr15 79311248 79311386 -6384368 - MER3 DNA MER1_type -10 199 38 215 0 67 0 chr15 79311602 79311632 -6384122 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 30 0 0 0 chr15 79312096 79312126 -6383628 + AT_rich Low_complexity Low_complexity 1 30 0 290 217 0 0 chr15 79313262 79313308 -6382446 + L2 LINE L2 3194 3239 -33 1648 157 93 16 chr15 79313705 79314018 -6381736 + MER1B DNA MER1_type 1 337 0 184 271 118 24 chr15 79315337 79315422 -6380332 + MIR SINE MIR 133 225 -37 34 72 0 0 chr15 79316179 79316248 -6379506 + AT_rich Low_complexity Low_complexity 1 69 0 260 181 12 48 chr15 79316501 79316584 -6379170 + A-rich Low_complexity Low_complexity 6 85 0 2180 107 3 0 chr15 79317064 79317355 -6378399 + AluSx SINE Alu 5 296 -16 305 275 162 7 chr15 79317424 79317566 -6378188 + MIR SINE MIR 69 232 -30 1162 299 105 45 chr15 79317752 79318769 -6376985 + L2 LINE L2 2221 3302 -11 199 364 18 27 chr15 79318768 79318878 -6376876 + L2 LINE L2 2924 3032 -240 * 2516 43 7 3 chr15 79319163 79319467 -6376287 + AluY SINE Alu 1 305 -6 482 233 8 0 chr15 79320215 79320335 -6375419 - L1MC4 LINE L1 -2 8040 7920 3596 133 2 11 chr15 79320436 79320970 -6374784 - MER1A DNA MER1_type 0 529 1 2878 238 72 27 chr15 79321227 79322334 -6373420 - L1MC4 LINE L1 -68 7927 6661 2436 65 0 23 chr15 79322795 79323104 -6372650 - AluY SINE Alu -9 302 1 3552 232 54 34 chr15 79323708 79324804 -6370950 - L1MC4a LINE L1 -85 7723 6606 21 0 0 0 chr15 79325675 79325696 -6370058 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr15 79327620 79327683 -6368071 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr15 79328195 79328238 -6367516 + AT_rich Low_complexity Low_complexity 1 43 0 382 287 32 0 chr15 79328751 79328845 -6366909 - MIR SINE MIR -67 141 45 484 250 15 23 chr15 79329350 79329482 -6366272 + MER5A DNA MER1_type 1 131 -58 2238 86 0 0 chr15 79330179 79330492 -6365262 - AluY SINE Alu 0 311 1 277 275 37 37 chr15 79330590 79330699 -6365055 + MLT1K LTR MaLR 458 566 -22 1348 167 53 72 chr15 79331743 79332061 -6363693 + AluJb SINE Alu 1 312 0 4525 99 116 5 chr15 79332061 79332881 -6362873 + L1PB1 LINE L1 2097 3011 -3851 * 5365 163 85 11 chr15 79332874 79335237 -6360517 + L1PB1 LINE L1 4085 6862 -5 180 0 0 0 chr15 79335237 79335257 -6360497 + (T)n Simple_repeat Simple_repeat 1 20 0 1756 151 24 14 chr15 79335267 79335559 -6360195 + AluSx SINE Alu 3 297 -15 24 53 0 0 chr15 79335919 79335957 -6359797 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr15 79336007 79336028 -6359726 + AT_rich Low_complexity Low_complexity 1 21 0 522 79 236 0 chr15 79337091 79337180 -6358574 + HY1 scRNA scRNA 1 110 -2 21 0 0 0 chr15 79337180 79337201 -6358553 + AT_rich Low_complexity Low_complexity 1 21 0 485 315 48 35 chr15 79338302 79338716 -6357038 - L1MC/D LINE L1 -453 5668 5337 462 314 101 5 chr15 79338793 79339000 -6356754 - MLT1L LTR MaLR -62 553 327 334 239 68 73 chr15 79339188 79339393 -6356361 - L1ME3A LINE L1 -5 6165 5962 1230 266 114 15 chr15 79339449 79340257 -6355497 - L1ME3A LINE L1 -208 5962 5079 306 283 41 7 chr15 79340588 79340733 -6355021 + L1M4 LINE L1 2675 2824 -3322 451 214 0 0 chr15 79340838 79340941 -6354813 - L1MC3 LINE L1 -703 7082 6980 * 719 154 89 59 chr15 79340936 79341105 -6354649 - L1MC4a LINE L1 -952 6856 6683 181 339 81 0 chr15 79341521 79341583 -6354171 - L2 LINE L2 -50 3222 3156 2240 86 7 0 chr15 79341785 79342077 -6353677 + AluSx SINE Alu 1 294 -18 336 278 118 37 chr15 79342494 79342739 -6353015 - LTR16C LTR ERVL -10 481 217 268 331 177 27 chr15 79342856 79343155 -6352599 + L2 LINE L2 2618 2961 -353 425 326 29 14 chr15 79343172 79343310 -6352444 - L2 LINE L2 -8 3264 3125 255 305 108 42 chr15 79343622 79343835 -6351919 + L2 LINE L2 3032 3258 -14 212 119 0 24 chr15 79344098 79344140 -6351614 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 433 219 119 51 chr15 79345132 79345314 -6350440 + MIR SINE MIR 18 209 -53 215 141 30 101 chr15 79345637 79345736 -6350018 + (CCCCG)n Simple_repeat Simple_repeat 2 93 0 25 51 0 0 chr15 79345872 79345911 -6349843 + GC_rich Low_complexity Low_complexity 1 39 0 422 308 155 46 chr15 79346300 79346908 -6348846 - L1M2 LINE L1 -5590 1259 586 441 0 0 0 chr15 79347977 79348026 -6347728 + (TG)n Simple_repeat Simple_repeat 2 50 0 428 215 116 8 chr15 79349704 79349825 -6345929 - MIR SINE MIR -20 242 109 6716 225 93 40 chr15 79349978 79351107 -6344647 - L1ME2 LINE L1 -241 6159 5091 2737 54 3 3 chr15 79351107 79351456 -6344298 - L1PA7 LINE L1 0 6154 5806 6716 225 93 40 chr15 79351456 79352163 -6343591 - L1ME2 LINE L1 -1309 5091 4423 1619 144 7 64 chr15 79352163 79352345 -6343409 - AluJo SINE Alu 0 303 144 2058 129 7 13 chr15 79352345 79352654 -6343100 - AluSx SINE Alu -5 307 1 1619 144 7 64 chr15 79352654 79352791 -6342963 - AluJo SINE Alu -159 144 1 6716 225 93 40 chr15 79352791 79354990 -6340764 - L1ME2 LINE L1 -1977 4423 1914 935 130 125 14 chr15 79354993 79355209 -6340545 - L1MC2 LINE L1 -1 6343 6104 665 273 74 33 chr15 79355210 79355868 -6339886 - L1ME2 LINE L1 -4648 1736 1050 497 362 46 20 chr15 79355891 79356236 -6339518 - L1ME2 LINE L1 -5414 1149 796 948 241 38 25 chr15 79356434 79356533 -6339221 + MER33 DNA MER1_type 1 97 -2488 2197 175 36 17 chr15 79356533 79356951 -6338803 - MSTB LTR MaLR 0 426 1 948 241 38 25 chr15 79356951 79357171 -6338583 + MER33 DNA MER1_type 97 324 0 413 301 99 23 chr15 79357180 79357525 -6338229 - L1ME2 LINE L1 -5992 571 201 3643 190 34 42 chr15 79357969 79358763 -6336991 - MER21B LTR ERV1 -1 862 75 511 258 104 16 chr15 79359135 79359317 -6336437 + MIR SINE MIR 47 244 -18 537 276 68 53 chr15 79359354 79359618 -6336136 + L2 LINE L2 3042 3309 -4 220 337 43 11 chr15 79359630 79359722 -6336032 - L2 LINE L2 -38 3275 3181 6892 55 4 18 chr15 79360884 79361880 -6333874 + MER11C LTR ERVK 1 1071 0 333 197 16 0 chr15 79363832 79363893 -6331861 - MER2 DNA MER2_type 0 345 284 912 153 13 6 chr15 79363940 79364097 -6331657 - MER2 DNA MER2_type -168 177 20 4223 227 91 14 chr15 79364594 79365860 -6329894 - L1M4 LINE L1 -1130 5016 3629 459 0 0 0 chr15 79365860 79365911 -6329843 + (TG)n Simple_repeat Simple_repeat 2 52 0 4223 227 91 14 chr15 79365911 79366045 -6329709 - L1M4 LINE L1 -2517 3629 3507 3853 142 14 9 chr15 79366045 79366714 -6329040 - MER50 LTR ERV1 -10 724 53 540 166 0 0 chr15 79366714 79366853 -6328901 + (TG)n Simple_repeat Simple_repeat 2 140 0 3200 160 21 0 chr15 79366978 79367535 -6328219 - L1PA16 LINE L1 -103 6063 5495 2213 106 3 7 chr15 79367535 79367836 -6327918 - AluSx SINE Alu -12 300 1 325 305 142 0 chr15 79368280 79368421 -6327333 + L2 LINE L2 2204 2364 -950 4318 180 43 17 chr15 79369265 79369384 -6326370 - L1MB3 LINE L1 -14 6169 6055 2498 46 16 10 chr15 79369384 79369691 -6326063 - AluY SINE Alu -2 309 1 4318 180 43 17 chr15 79369691 79370497 -6325257 - L1MB3 LINE L1 -128 6055 5272 2066 114 13 10 chr15 79370497 79370796 -6324958 - AluSq SINE Alu -13 300 1 4318 180 43 17 chr15 79370796 79371563 -6324191 - L1MB3 LINE L1 -911 5272 4442 405 169 0 0 chr15 79371596 79371661 -6324093 + Tigger5 DNA MER2_type 1 65 -2258 * 1400 109 12 31 chr15 79371632 79371889 -6323865 + Tigger5 DNA MER2_type 2072 2323 0 4490 187 37 48 chr15 79371889 79373213 -6322541 - L1MB3 LINE L1 -1739 4407 3099 565 236 31 46 chr15 79373261 79373456 -6322298 - L1M4 LINE L1 -1423 4706 4515 597 260 172 60 chr15 79373484 79373903 -6321851 - L2 LINE L2 -1884 1430 965 1796 109 4 0 chr15 79373903 79374141 -6321613 + AluSg/x SINE Alu 74 312 0 512 235 76 41 chr15 79374801 79375206 -6320548 - L1MEc LINE L1 -3679 2450 2083 315 329 86 21 chr15 79375209 79375452 -6320302 - L1MEc LINE L1 -4258 2052 1794 405 255 100 61 chr15 79375512 79375841 -6319913 - L1MEc LINE L1 -4612 1698 1357 719 66 0 0 chr15 79375845 79375936 -6319818 + AluY SINE Alu 1 91 -227 3731 48 24 2 chr15 79375936 79376433 -6319321 - LTR10D LTR ERV1 0 513 6 1653 90 0 0 chr15 79376433 79376644 -6319110 + AluY SINE Alu 83 293 -18 219 203 38 0 chr15 79376666 79376745 -6319009 + CT-rich Low_complexity Low_complexity 2 83 0 359 248 70 63 chr15 79376778 79377077 -6318677 - L1MEc LINE L1 -4862 1257 957 283 276 110 14 chr15 79377688 79377833 -6317921 - L1MEc LINE L1 -5906 213 55 304 357 138 41 chr15 79378072 79378391 -6317363 + L2 LINE L2 2881 3230 -42 850 269 73 8 chr15 79379178 79379412 -6316342 + MIR SINE MIR 14 262 0 24 67 0 0 chr15 79379874 79379919 -6315835 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr15 79380333 79380355 -6315399 + AT_rich Low_complexity Low_complexity 1 22 0 1066 215 53 0 chr15 79380488 79380697 -6315057 + MER58A DNA MER1_type 4 223 -1 1843 255 102 41 chr15 79382155 79383032 -6312722 - L1ME3A LINE L1 -12 6158 5336 1486 194 30 20 chr15 79383032 79383331 -6312423 - AluJo SINE Alu -10 302 1 1843 255 102 41 chr15 79383331 79384187 -6311567 - L1ME3A LINE L1 -834 5336 4321 1787 178 43 26 chr15 79384178 79384334 -6311420 - L1M4 LINE L1 -538 5926 5774 * 2317 80 0 3 chr15 79384334 79384635 -6311119 - AluY SINE Alu -11 300 1 1787 178 43 26 chr15 79384635 79385022 -6310732 - L1M4 LINE L1 -690 5774 1494 371 230 137 37 chr15 79385066 79385227 -6310527 - L1M4 LINE L1 -5117 1309 1133 383 327 73 23 chr15 79385846 79386106 -6309648 - L1MC/D LINE L1 -2038 5770 5498 235 238 0 36 chr15 79386106 79386190 -6309564 + CT-rich Low_complexity Low_complexity 4 84 0 235 323 78 38 chr15 79386422 79386846 -6308908 - L1MC/D LINE L1 -3377 2769 2329 219 167 0 0 chr15 79386879 79386921 -6308833 + CT-rich Low_complexity Low_complexity 1 42 0 1991 136 30 0 chr15 79386929 79387231 -6308523 - AluJb SINE Alu -1 311 1 320 198 0 31 chr15 79387265 79387361 -6308393 - L1MC/D LINE L1 -3871 2275 2183 2387 49 3 7 chr15 79387825 79388113 -6307641 + AluY SINE Alu 1 287 -24 221 259 25 74 chr15 79388453 79388534 -6307220 - L2 LINE L2 -4 3309 3233 908 264 57 27 chr15 79388629 79388963 -6306791 - HAL1b LINE L1 -746 602 259 26 0 0 0 chr15 79388965 79388991 -6306763 + AT_rich Low_complexity Low_complexity 1 26 0 2374 74 0 0 chr15 79390190 79390488 -6305266 - AluY SINE Alu -13 298 1 485 189 0 0 chr15 79391289 79391379 -6304375 - L1MC1 LINE L1 0 6333 6244 636 327 96 43 chr15 79391425 79391844 -6303910 - L2 LINE L2 -2738 576 136 2513 62 0 7 chr15 79394714 79395020 -6300734 + AluY SINE Alu 1 304 -7 309 331 69 8 chr15 79396260 79396390 -6299364 + MIR3 SINE MIR 62 199 -9 1670 120 18 15 chr15 79397021 79397295 -6298459 - Tigger4(Zombi) DNA MER2_type 0 2731 2457 1748 156 123 3 chr15 79397295 79397597 -6298157 - Tigger4(Zombi) DNA MER2_type -2393 338 1 2042 121 3 10 chr15 79400341 79400638 -6295116 + AluSx SINE Alu 1 295 -17 2058 136 0 0 chr15 79401040 79401342 -6294412 - AluSx SINE Alu -10 302 1 940 119 233 10 chr15 79401493 79401686 -6294068 + MER46A DNA MER2_type 1 236 0 2453 133 21 19 chr15 79402215 79402645 -6293109 + L1MA4A LINE L1 5844 6274 -29 279 220 46 37 chr15 79402684 79402793 -6292961 - LTR9B LTR ERV1 -90 554 445 2469 80 0 0 chr15 79402976 79403278 -6292476 + AluSx SINE Alu 1 302 -10 201 224 219 38 chr15 79403718 79403863 -6291891 - MIR SINE MIR -46 216 45 306 284 145 44 chr15 79403926 79404243 -6291511 + L1MCc LINE L1 62 410 -6013 539 277 134 25 chr15 79404501 79404739 -6291015 + L1MCc LINE L1 974 1237 -5186 787 256 111 35 chr15 79404744 79405412 -6290342 + L1MCc LINE L1 1846 2457 -4484 2609 164 27 4 chr15 79405419 79405896 -6289858 - L1MC3 LINE L1 -9 7776 7289 1264 196 9 0 chr15 79405903 79406128 -6289626 - MER46A DNA MER2_type -9 227 1 251 151 135 135 chr15 79406128 79406254 -6289500 - L1MC3 LINE L1 -495 7290 7165 262 161 16 65 chr15 79406261 79406323 -6289431 - MLT1F1 LTR MaLR -474 93 35 1775 148 66 42 chr15 79406323 79406701 -6289053 - L1MC3 LINE L1 -688 7097 6711 3076 231 94 9 chr15 79406708 79407101 -6288653 + L1MCc LINE L1 2562 2920 -4021 261 0 0 0 chr15 79407101 79407130 -6288624 + (TG)n Simple_repeat Simple_repeat 2 30 0 3076 231 94 9 chr15 79407130 79407145 -6288609 + L1MCc LINE L1 2920 2932 -4009 2365 88 3 0 chr15 79407145 79407439 -6288315 + AluSp SINE Alu 9 303 -10 3076 231 94 9 chr15 79407439 79408300 -6287454 + L1MCc LINE L1 2932 3930 -3011 * 3960 240 87 27 chr15 79408297 79410071 -6285683 + L1MCc LINE L1 4364 6283 -743 3007 226 90 46 chr15 79410190 79411300 -6284454 + L1MC4a LINE L1 6648 7806 -2 1727 110 20 4 chr15 79412021 79412275 -6283479 - AluSg SINE Alu -9 301 44 324 292 83 71 chr15 79414982 79415150 -6280604 - MIR SINE MIR -50 212 43 384 240 0 0 chr15 79418214 79418289 -6277465 - L2 LINE L2 -3 3310 3236 693 298 157 20 chr15 79418406 79419145 -6276609 - L2 LINE L2 -351 2963 2124 2068 110 20 13 chr15 79419838 79420138 -6275616 - AluSx SINE Alu -10 302 1 233 191 79 16 chr15 79421518 79421581 -6274173 + MIR SINE MIR 118 184 -78 306 0 0 0 chr15 79422100 79422134 -6273620 + (CAG)n Simple_repeat Simple_repeat 1 34 0 192 200 0 0 chr15 79422452 79422502 -6273252 + (TA)n Simple_repeat Simple_repeat 2 51 0 192 135 0 0 chr15 79422497 79422534 -6273220 + (TG)n Simple_repeat Simple_repeat 2 38 0 623 242 32 0 chr15 79427615 79427772 -6267982 - L1MD3 LINE L1 -15 7980 7819 273 154 39 0 chr15 79627776 79627828 -6067926 + L1M4c LINE L1 1725 1778 -4606 248 263 0 0 chr15 79627828 79627885 -6067869 + LTR41 LTR ERVL 148 204 -569 235 254 211 35 chr15 79628007 79628149 -6067605 + LTR41 LTR ERVL 410 576 -197 561 175 6 88 chr15 79628219 79628379 -6067375 + LTR41 LTR ERVL 584 730 -43 1899 149 51 6 chr15 79628593 79628909 -6066845 - Tigger2 DNA MER2_type -10 2708 2379 353 248 139 0 chr15 79629908 79630009 -6065745 - MIR SINE MIR -106 156 42 284 215 65 56 chr15 79630723 79630830 -6064924 - MIR3 SINE MIR -23 185 78 15093 36 7 0 chr15 79630952 79633562 -6062192 + L1PA4 LINE L1 3559 6152 -3 413 276 10 153 chr15 79633801 79634004 -6061750 - MER5B DNA MER1_type -2 176 3 3049 126 121 7 chr15 79634020 79634567 -6061187 - LTR36 LTR ERV1 0 611 3 419 219 164 48 chr15 79634596 79634742 -6061012 + MER5A DNA MER1_type 26 188 -1 2676 129 60 103 chr15 79634780 79635396 -6060358 - LTR10A LTR ERV1 0 633 1 668 239 13 13 chr15 79635400 79635555 -6060199 + MER5B DNA MER1_type 24 178 0 236 234 31 16 chr15 79635911 79635975 -6059779 - L2 LINE L2 -1 3271 3207 2123 106 0 7 chr15 79639605 79639908 -6055846 - AluSg SINE Alu -9 301 1 7536 27 22 0 chr15 79640635 79641565 -6054189 - L1PA4 LINE L1 0 6155 5221 913 226 22 6 chr15 79641795 79641976 -6053778 + MER20 DNA MER1_type 32 215 -4 1800 193 177 22 chr15 79641995 79642405 -6053349 + L1MD3 LINE L1 7404 7908 -87 2246 109 0 0 chr15 79642405 79642717 -6053037 - AluSx SINE Alu 0 312 1 1800 193 177 22 chr15 79642717 79642810 -6052944 + L1MD3 LINE L1 7908 7985 -10 258 81 0 0 chr15 79642874 79642911 -6052843 + (CA)n Simple_repeat Simple_repeat 2 38 0 340 304 43 0 chr15 79642998 79643113 -6052641 - MIR SINE MIR -19 243 124 196 313 82 61 chr15 79644465 79644612 -6051142 + MER5A DNA MER1_type 40 189 0 578 284 161 5 chr15 79644927 79645145 -6050609 - MIR SINE MIR -5 257 6 646 311 5 0 chr15 79647149 79647355 -6048399 + MER3 DNA MER1_type 3 209 0 332 258 31 21 chr15 79648901 79648998 -6046756 - ORSL DNA AcHobo -157 118 21 459 192 0 0 chr15 79649120 79649193 -6046561 - L2 LINE L2 0 3313 3241 250 318 47 0 chr15 79650405 79650534 -6045220 + MARNA DNA Mariner 400 534 -52 583 318 108 18 chr15 79650612 79651282 -6044472 - L1M4 LINE L1 -1439 4707 3978 219 351 48 30 chr15 79651326 79651494 -6044260 + MIR3 SINE MIR 38 208 0 246 317 106 8 chr15 79651535 79651658 -6044096 - L2 LINE L2 -1 3271 3137 787 192 111 0 chr15 79651691 79651863 -6043891 + MER3 DNA MER1_type 1 191 -18 230 214 157 29 chr15 79652615 79652685 -6043069 - L1M1 LINE L1 -6302 1263 1185 1666 243 41 46 chr15 79653741 79653831 -6041923 + L1ME3A LINE L1 5075 5164 -1006 2469 54 0 0 chr15 79653831 79654127 -6041627 - AluY SINE Alu -15 296 1 1666 243 41 46 chr15 79654127 79654850 -6040904 + L1ME3A LINE L1 5164 5988 -182 322 330 134 50 chr15 79655296 79655902 -6039852 + HAL1b LINE L1 229 885 -463 749 257 93 58 chr15 79656817 79657280 -6038474 + L1MEd LINE L1 709 1187 -4932 240 208 38 0 chr15 79657346 79657399 -6038355 + MLT1F LTR MaLR 21 75 -467 290 289 145 0 chr15 79657469 79657635 -6038119 + L1ME1 LINE L1 5941 6130 -36 1326 227 46 46 chr15 79658397 79658670 -6037084 - Charlie4a DNA MER1_type -1496 465 190 2078 109 7 0 chr15 79658670 79658963 -6036791 + AluSx SINE Alu 1 295 -17 1326 227 46 46 chr15 79658963 79659142 -6036612 - Charlie4a DNA MER1_type -1770 191 13 444 206 36 67 chr15 79660171 79660291 -6035463 - L1MEc LINE L1 -4271 2125 2010 2125 111 0 0 chr15 79660291 79660588 -6035166 + AluSq SINE Alu 1 297 -16 444 206 36 67 chr15 79660588 79660632 -6035122 - L1MEc LINE L1 -4386 2010 1966 8786 58 3 4 chr15 79660639 79661711 -6034043 + MER11C LTR ERVK 1 1071 0 1562 123 89 72 chr15 79661711 79662088 -6033666 - Tigger3(Golem) DNA MER2_type -2 3027 1 295 192 41 27 chr15 79662088 79662161 -6033593 - L1MEc LINE L1 -4428 1968 1895 2078 149 140 9 chr15 79662191 79662613 -6033141 - MLT1D LTR MaLR 0 505 29 634 277 62 5 chr15 79662654 79662849 -6032905 - L1MEc LINE L1 -4525 1871 1666 544 321 50 36 chr15 79663102 79663382 -6032372 - L2 LINE L2 -213 3100 2817 2438 111 113 71 chr15 79663692 79664187 -6031567 + LTR10A LTR ERV1 30 545 -64 328 276 45 8 chr15 79664728 79664862 -6030892 + MIR SINE MIR 47 185 -77 348 329 121 35 chr15 79666235 79666466 -6029288 + MIR SINE MIR 9 259 -3 419 343 6 6 chr15 79666695 79666873 -6028881 + (TG)n Simple_repeat Simple_repeat 1 178 0 195 100 0 0 chr15 79667163 79667193 -6028561 + (T)n Simple_repeat Simple_repeat 1 30 0 1827 134 0 10 chr15 79667713 79668003 -6027751 + AluSx SINE Alu 1 287 -25 2172 103 0 0 chr15 79668253 79668553 -6027201 + AluSx SINE Alu 1 300 -12 1907 137 63 38 chr15 79671337 79671703 -6024051 - THE1C LTR MaLR 0 375 1 208 278 69 28 chr15 79672023 79672095 -6023659 + L2 LINE L2 3194 3268 -4 2173 85 0 3 chr15 79672326 79672619 -6023135 - AluSc SINE Alu -9 300 9 1366 203 63 0 chr15 79672881 79673167 -6022587 - L1MB1 LINE L1 -1 6167 5864 3239 188 19 5 chr15 79673173 79673797 -6021957 + L1MB1 LINE L1 5254 5886 -282 315 261 0 90 chr15 79676738 79676872 -6018882 - L1MC4 LINE L1 -1322 6720 6599 * 346 213 19 93 chr15 79676782 79676938 -6018816 + L1MC4 LINE L1 6550 6648 -1137 308 273 23 23 chr15 79676943 79677031 -6018723 - L1MC4 LINE L1 -1340 6702 6615 308 273 23 23 chr15 79677005 79677093 -6018661 - L1MC4 LINE L1 -1340 6702 6615 308 273 23 23 chr15 79677098 79677186 -6018568 - L1MC4 LINE L1 -1340 6702 6615 342 210 4 87 chr15 79677190 79677320 -6018434 - L1MCa LINE L1 -1339 6983 1995 330 356 0 0 chr15 79677320 79677435 -6018319 - L1MC3 LINE L1 -1139 6646 6532 * 373 264 23 0 chr15 79677369 79677456 -6018298 + L1MC4 LINE L1 6615 6703 -1339 345 293 0 37 chr15 79677412 79677519 -6018235 - L1MC4 LINE L1 -1339 6703 6614 * 235 200 0 36 chr15 79677562 79677617 -6018137 + (CATA)n Simple_repeat Simple_repeat 3 55 0 24 53 0 0 chr15 79677907 79677945 -6017809 + AT_rich Low_complexity Low_complexity 1 38 0 1938 225 75 8 chr15 79678045 79678564 -6017190 + L1MB8 LINE L1 4405 4958 -1188 1385 136 86 46 chr15 79678568 79678848 -6016906 + AluJb SINE Alu 5 295 -17 2583 224 105 22 chr15 79678849 79678919 -6016835 + L1MB8 LINE L1 5201 5264 -914 1912 127 10 3 chr15 79678919 79679211 -6016543 + AluSx SINE Alu 1 294 -18 2583 224 105 22 chr15 79679211 79680025 -6015729 + L1MB8 LINE L1 5264 6178 0 237 267 0 0 chr15 79683792 79683852 -6011902 - MIR SINE MIR -111 151 92 207 254 95 16 chr15 79684821 79684884 -6010870 + L2 LINE L2 3246 3313 0 260 244 174 43 chr15 79685472 79685587 -6010167 + MIR SINE MIR 77 206 -56 606 244 136 12 chr15 79686906 79687148 -6008606 - LTR16C LTR ERVL -26 465 194 202 276 115 11 chr15 79687498 79687585 -6008169 + L2 LINE L2 2996 3091 -181 631 235 142 39 chr15 79688256 79688567 -6007187 + MER113 DNA MER1_type? 73 415 -106 4241 61 2 6 chr15 79689889 79690431 -6005323 - L1PA7 LINE L1 0 6154 5615 601 180 55 23 chr15 79690595 79690723 -6005031 + MER5B DNA MER1_type 47 178 0 207 243 108 14 chr15 79690815 79690889 -6004865 + L2 LINE L2 3186 3266 -6 2036 109 3 0 chr15 79690890 79691184 -6004570 - AluSx SINE Alu -13 299 5 2235 88 3 0 chr15 79691513 79691809 -6003945 - AluSp SINE Alu -16 297 1 186 324 38 29 chr15 79692953 79693058 -6002696 - L2 LINE L2 -15 3257 3152 242 263 161 15 chr15 79693061 79693198 -6002556 + L2 LINE L2 2303 2459 -855 421 228 63 111 chr15 79693272 79693389 -6002365 - MIR SINE MIR -32 230 124 2079 132 0 0 chr15 79693389 79693699 -6002055 + AluSx SINE Alu 1 310 -2 421 228 63 111 chr15 79693699 79693770 -6001984 - MIR SINE MIR -138 124 51 963 239 110 26 chr15 79693770 79694105 -6001649 - MLT1C LTR MaLR -76 391 19 492 285 101 34 chr15 79696657 79696983 -5998771 - L1ME LINE L1 -524 5640 5293 1900 139 3 7 chr15 79697005 79697300 -5998454 + AluSx SINE Alu 1 294 -18 475 113 0 0 chr15 79698343 79698405 -5997349 - MER8 DNA MER2_type 0 239 178 41394 53 3 1 chr15 79698505 79703626 -5992128 - L1P LINE L1 -1010 5136 8 749 289 71 30 chr15 79704142 79704481 -5991273 - MLT1I LTR MaLR -44 365 13 380 286 52 14 chr15 79704665 79704878 -5990876 + HAL1 LINE L1 863 1083 -1424 1104 167 0 32 chr15 79704883 79705104 -5990650 + AluJb SINE Alu 82 295 -17 2170 87 0 13 chr15 79705126 79705425 -5990329 + AluSc SINE Alu 1 295 -14 382 315 45 18 chr15 79705588 79705810 -5989944 + L1ME LINE L1 5318 5545 -625 504 170 60 10 chr15 79705948 79706048 -5989706 - L1MB8 LINE L1 0 6178 6074 2937 87 20 5 chr15 79706128 79706520 -5989234 - MLT2A1 LTR ERVL -46 398 1 10883 59 25 4 chr15 79706520 79707890 -5987864 - HERVL-A1 LTR ERVL 0 5654 4255 6864 200 46 8 chr15 79707897 79710010 -5985744 - L1MB8 LINE L1 -132 6046 3842 1809 130 0 57 chr15 79710010 79710326 -5985428 - AluSx SINE Alu -14 298 1 6864 200 46 8 chr15 79710326 79710459 -5985295 - L1MB8 LINE L1 -2336 3842 3715 312 236 99 24 chr15 79710451 79710602 -5985152 + L1ME LINE L1 5695 5867 -297 * 2107 125 3 0 chr15 79711145 79711457 -5984297 + AluSq SINE Alu 1 313 0 476 308 149 34 chr15 79711792 79712376 -5983378 + HAL1b LINE L1 236 886 -462 455 293 50 91 chr15 79712771 79713296 -5982458 + L1M4 LINE L1 3656 4158 -1988 600 171 0 0 chr15 79713299 79713387 -5982367 + 5S rRNA rRNA 3 90 -31 445 280 153 7 chr15 79713560 79713783 -5981971 - MIR SINE MIR -10 252 1 27 49 0 0 chr15 79715265 79715306 -5980448 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr15 79716691 79716719 -5979035 + AT_rich Low_complexity Low_complexity 1 28 0 519 224 77 19 chr15 79717536 79717692 -5978062 + MIR SINE MIR 14 178 -84 408 306 46 20 chr15 79717870 79718066 -5977688 - L1ME LINE L1 -578 5584 5384 401 349 32 6 chr15 79718084 79718422 -5977332 - L1ME LINE L1 -913 5233 4887 1869 125 20 23 chr15 79718479 79718647 -5977107 - AluSx SINE Alu -8 304 136 2233 72 3 0 chr15 79718647 79718980 -5976774 - AluY SINE Alu 0 311 1 1869 125 20 23 chr15 79718980 79719116 -5976638 - AluSx SINE Alu -176 136 1 256 336 35 17 chr15 79719119 79719235 -5976519 - Charlie8 DNA MER1_type -2299 118 1 774 278 16 32 chr15 79719238 79719486 -5976268 + MIR SINE MIR 12 255 -7 2004 59 12 0 chr15 79719540 79719796 -5975958 - AluY SINE Alu -1 310 52 21 0 0 0 chr15 79720184 79720205 -5975549 + AT_rich Low_complexity Low_complexity 1 21 0 228 135 0 0 chr15 79720649 79720686 -5975068 + (T)n Simple_repeat Simple_repeat 1 37 0 452 255 69 54 chr15 79721078 79721282 -5974472 - L1ME3A LINE L1 -1 6169 5963 1160 179 71 113 chr15 79722376 79722783 -5972971 - MLT1B LTR MaLR 0 390 1 792 197 6 22 chr15 79725039 79725222 -5970532 - L1M4 LINE L1 -1028 5118 4939 1972 109 3 45 chr15 79725886 79726061 -5969693 - AluSx SINE Alu -14 298 117 257 0 0 29 chr15 79726061 79726095 -5969659 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2181 82 4 0 chr15 79726095 79726375 -5969379 - AluY SINE Alu -30 281 1 1972 109 3 45 chr15 79726375 79726509 -5969245 - AluSx SINE Alu -193 119 1 197 107 0 0 chr15 79726641 79726669 -5969085 + MIR SINE MIR 117 144 -118 21 0 0 0 chr15 79726806 79726827 -5968927 + AT_rich Low_complexity Low_complexity 1 21 0 2000 128 62 43 chr15 79728402 79728770 -5966984 - THE1C LTR MaLR 0 375 1 210 271 106 12 chr15 79729131 79729216 -5966538 - MER91A DNA MER1_type -46 150 58 259 307 0 11 chr15 79731550 79731638 -5964116 + MIR SINE MIR 170 256 -6 655 270 0 7 chr15 79731692 79731840 -5963914 - MER5B DNA MER1_type -4 174 28 2784 213 89 9 chr15 79731863 79732563 -5963191 - L1MD2 LINE L1 -55 6698 5943 * 3062 220 56 60 chr15 79732556 79734301 -5961453 - L1MD2 LINE L1 -3047 3493 1763 5868 127 58 4 chr15 79734322 79736152 -5959602 - L1MA3 LINE L1 0 7724 5796 * 9278 154 21 18 chr15 79736150 79737437 -5958317 - L1MA3 LINE L1 -5915 1650 355 1798 125 99 37 chr15 79737437 79737790 -5957964 - THE1C LTR MaLR 0 375 1 9278 154 21 18 chr15 79737790 79738140 -5957614 - L1MA3 LINE L1 -7210 355 8 2362 209 95 18 chr15 79738138 79738344 -5957410 - L1MD2 LINE L1 -4789 1751 1562 * 2139 139 0 7 chr15 79738344 79738646 -5957108 - AluSx SINE Alu -6 306 7 2362 209 95 18 chr15 79738646 79739303 -5956451 - L1MD2 LINE L1 -4978 1562 834 180 0 0 0 chr15 79739398 79739418 -5956336 + (CTG)n Simple_repeat Simple_repeat 1 20 0 576 226 44 96 chr15 79739573 79739843 -5955911 - L1MD2 LINE L1 -6215 325 70 278 278 0 14 chr15 79739871 79739943 -5955811 - MIR SINE MIR -107 155 85 751 258 86 5 chr15 79740461 79740659 -5955095 + MIR SINE MIR 5 218 -44 553 334 174 21 chr15 79740802 79741326 -5954428 - L3 LINE CR1 -1 1576 973 320 305 104 24 chr15 79741362 79741526 -5954228 + MER117 DNA MER1_type 3 179 -18 188 255 59 20 chr15 79741534 79741585 -5954169 - L3 LINE CR1 -680 897 845 300 236 282 0 chr15 79741662 79741772 -5953982 + MIR SINE MIR 50 190 -72 557 323 195 22 chr15 79741850 79742398 -5953356 - L3 LINE CR1 -857 720 78 868 188 0 66 chr15 79743297 79743441 -5952313 + FRAM SINE Alu 1 130 -182 2318 101 3 3 chr15 79743441 79743738 -5952016 - AluSp SINE Alu -16 297 1 868 188 0 66 chr15 79743738 79743774 -5951980 + FRAM SINE Alu 130 167 -9 296 176 27 54 chr15 79744436 79744510 -5951244 - MER5A DNA MER1_type -108 81 10 654 84 21 0 chr15 79747311 79747406 -5948348 + L1MA3 LINE L1 6209 6305 0 199 239 194 37 chr15 79748917 79749051 -5946703 - MER5B DNA MER1_type -2 176 22 213 39 0 0 chr15 79750976 79751002 -5944752 + (A)n Simple_repeat Simple_repeat 1 26 0 367 314 76 0 chr15 79751303 79751421 -5944333 + MIR SINE MIR 122 248 -14 2782 66 3 0 chr15 79753198 79753548 -5942206 + L1PA7 LINE L1 5804 6154 0 255 230 81 11 chr15 79753568 79753655 -5942099 - MER112 DNA MER1_type -43 217 125 297 269 56 28 chr15 79754073 79754181 -5941573 + MIR3 SINE MIR 89 199 -9 250 320 17 25 chr15 79755037 79755164 -5940590 - MIR3 SINE MIR -47 161 33 309 212 88 44 chr15 79755169 79755306 -5940448 - MER96 DNA MER1_type? -1 174 32 25607 54 4 0 chr15 79755791 79759107 -5936647 - L1P LINE L1 -2813 3333 6 455 320 127 27 chr15 79760141 79760458 -5935296 + L1MDa LINE L1 1765 2141 -4444 21 0 0 0 chr15 79760476 79760497 -5935257 + AT_rich Low_complexity Low_complexity 1 21 0 457 287 44 52 chr15 79760575 79760688 -5935066 + L1M4 LINE L1 3879 3991 -2155 3758 70 0 8 chr15 79760688 79761175 -5934579 + L1PA8 LINE L1 5690 6172 0 457 287 44 52 chr15 79761175 79761423 -5934331 + L1M4 LINE L1 3991 4237 -1909 303 273 107 69 chr15 79761599 79761815 -5933939 + L1ME4a LINE L1 5894 6117 -4 2358 152 58 48 chr15 79762462 79762924 -5932830 - MLT1C LTR MaLR 0 467 1 522 248 67 13 chr15 79767693 79767842 -5927912 - MER63A DNA MER1_type -28 182 26 299 247 200 32 chr15 79768883 79769073 -5926681 - MLT1K LTR MaLR -111 477 256 279 321 62 36 chr15 79769773 79769966 -5925788 + L2 LINE L2 2994 3191 -81 2080 133 3 69 chr15 79770062 79770423 -5925331 + MER1B DNA MER1_type 1 337 0 547 259 105 12 chr15 79770823 79770985 -5924769 + MIR SINE MIR 34 210 -52 273 296 53 45 chr15 79775635 79775767 -5919987 + MIR SINE MIR 20 152 -56 382 270 39 90 chr15 79776845 79777098 -5918656 - MIR SINE MIR -17 245 3 234 0 0 0 chr15 79778169 79778195 -5917559 + (A)n Simple_repeat Simple_repeat 1 26 0 8354 66 8 14 chr15 79779191 79780268 -5915486 - MER11C LTR ERVK 0 1071 1 1408 225 42 98 chr15 79780493 79780609 -5915145 + L1ME LINE L1 570 691 -5943 2099 117 4 0 chr15 79780609 79780890 -5914864 + AluSx SINE Alu 6 287 -25 1408 225 42 98 chr15 79780890 79781409 -5914345 + L1ME LINE L1 691 1170 -5464 402 172 42 175 chr15 79781418 79781677 -5914077 + MER33 DNA MER1_type 58 271 -2314 2289 117 3 0 chr15 79781677 79781976 -5913778 + AluSx SINE Alu 1 300 -12 402 172 42 175 chr15 79781976 79782024 -5913730 + MER33 DNA MER1_type 271 324 0 698 275 89 27 chr15 79782210 79782677 -5913077 + L1ME LINE L1 1151 1617 -4925 698 264 60 10 chr15 79783111 79783312 -5912442 - MER58C DNA MER1_type 0 215 5 325 309 32 0 chr15 79783852 79783946 -5911808 - L1MC4 LINE L1 -1334 6708 6612 2695 171 52 8 chr15 79783950 79784454 -5911300 + Tigger7 DNA MER2_type 1 526 -1961 560 174 0 0 chr15 79784448 79784540 -5911214 + Tigger7 DNA MER2_type 2396 2487 0 * 2881 260 75 7 chr15 79786805 79787915 -5907839 + L1ME LINE L1 2756 3940 -2704 678 263 11 0 chr15 79787906 79788092 -5907662 + L1ME LINE L1 4494 4681 -1963 * 6421 202 91 6 chr15 79788197 79789775 -5905979 - L1M4c LINE L1 -4671 1713 2 2030 187 75 12 chr15 79790588 79791016 -5904738 - MLT1C LTR MaLR -4 463 9 1086 177 65 23 chr15 79791552 79791767 -5903987 + MER58A DNA MER1_type 1 224 0 263 258 0 32 chr15 79791942 79792035 -5903719 + L1ME3A LINE L1 6075 6164 -6 234 0 0 0 chr15 79793716 79793742 -5902012 + (T)n Simple_repeat Simple_repeat 1 26 0 180 111 0 0 chr15 79795699 79795726 -5900028 + (A)n Simple_repeat Simple_repeat 1 27 0 724 304 64 3 chr15 79796303 79796616 -5899138 - MER46C DNA MER2_type -1 337 6 2330 87 0 0 chr15 79799312 79799599 -5896155 + AluY SINE Alu 2 288 -23 344 274 24 0 chr15 79799612 79799696 -5896058 - L1MC4 LINE L1 -1339 6703 6618 224 307 79 10 chr15 79799696 79799797 -5895957 - L2 LINE L2 -13 3259 3152 2199 117 0 13 chr15 79801401 79801701 -5894053 + AluSg SINE Alu 1 296 -14 1773 199 19 30 chr15 79801993 79802360 -5893394 - MLT1A1 LTR MaLR -2 363 1 758 197 43 5 chr15 79803518 79803706 -5892048 - MLT1A1 LTR MaLR -1 364 170 936 200 0 0 chr15 79803712 79803872 -5891882 + AluJb SINE Alu 135 294 -18 2100 133 0 10 chr15 79803884 79804186 -5891568 + AluSx SINE Alu 1 299 -13 577 213 31 12 chr15 79804197 79804357 -5891397 - MLT1A1 LTR MaLR -202 163 1 2209 133 10 0 chr15 79805999 79806300 -5889454 + AluSx SINE Alu 1 304 -8 347 275 9 37 chr15 79807599 79807708 -5888046 + HAL1 LINE L1 805 910 -1597 421 285 89 0 chr15 79807737 79807895 -5887859 + HAL1 LINE L1 1582 1753 -754 282 310 204 26 chr15 79808425 79808812 -5886942 - L2 LINE L2 -1 3312 2857 210 150 0 0 chr15 79810101 79810141 -5885613 + (CATCC)n Simple_repeat Simple_repeat 4 43 0 2342 74 0 52 chr15 79811198 79811508 -5884246 - AluSg SINE Alu -16 294 1 858 201 27 0 chr15 79812076 79812260 -5883494 + MER5A DNA MER1_type 1 189 0 1600 71 0 5 chr15 79863410 79863608 -5832146 - AluY SINE Alu -94 217 21 690 67 0 0 chr15 79863608 79863698 -5832056 - AluY SINE Alu -221 90 1 6222 155 36 11 chr15 79863701 79864753 -5831001 + HUERS-P3 LTR ERV1 749 1827 -7092 2013 122 0 14 chr15 79865208 79865517 -5830237 - AluSx SINE Alu 0 305 1 3765 58 0 2 chr15 79866806 79867285 -5828469 + L1PA8A LINE L1 5341 5818 -313 14807 202 20 3 chr15 79867385 79871665 -5824089 + L1PB1 LINE L1 2101 6506 -287 542 195 136 0 chr15 79871665 79871783 -5823971 + MIR SINE MIR 114 247 -15 527 182 5 43 chr15 79871894 79872081 -5823673 + CT-rich Low_complexity Low_complexity 1 180 0 7481 28 0 0 chr15 79872413 79873586 -5822168 - L1PA4 LINE L1 -2 6153 4984 10432 36 2 2 chr15 79873587 79874857 -5820897 + L1PA4 LINE L1 3713 4982 -1164 243 191 0 0 chr15 79875212 79875259 -5820495 - Alu SINE Alu -2 301 255 772 143 77 6 chr15 79875703 79875871 -5819883 - L1MA8 LINE L1 -6 6285 6106 1545 109 19 43 chr15 79875871 79876127 -5819627 + Tigger2a DNA MER2_type 3 252 -182 323 170 0 0 chr15 79876227 79876280 -5819474 + MSTA LTR MaLR 376 428 0 2256 104 0 0 chr15 79876828 79877125 -5818629 - AluSg SINE Alu -13 297 1 217 297 158 0 chr15 79877444 79877545 -5818209 - MIR SINE MIR -71 191 75 868 235 0 0 chr15 79878606 79878772 -5816982 - Tigger2 DNA MER2_type -10 2708 2543 387 250 0 0 chr15 79878873 79878953 -5816801 - AluS SINE Alu -219 84 5 1169 276 125 19 chr15 79879083 79879546 -5816208 - LTR40a LTR ERVL -7 512 1 228 222 0 19 chr15 79881897 79881951 -5813803 + CT-rich Low_complexity Low_complexity 2 54 0 4100 230 45 49 chr15 79882138 79884132 -5811622 - L1ME1 LINE L1 -288 5878 3898 241 368 66 0 chr15 79884215 79884351 -5811403 + L1MEd LINE L1 300 444 -5675 270 185 15 46 chr15 79884609 79884674 -5811080 - L2 LINE L2 -1 3312 3250 21 36 0 0 chr15 79885181 79885209 -5810545 + AT_rich Low_complexity Low_complexity 1 28 0 970 140 60 45 chr15 79888056 79888256 -5807498 - L1MA8 LINE L1 -192 6099 5897 1172 301 213 14 chr15 79888684 79889910 -5805844 - L2 LINE L2 -17 3296 1818 895 226 124 96 chr15 79889922 79890503 -5805251 + HAL1 LINE L1 32 628 -1879 307 270 22 66 chr15 79891753 79891890 -5803864 - MIR3 SINE MIR -34 174 44 3530 40 0 5 chr15 79892037 79892441 -5803313 + L1PA5 LINE L1 5753 6154 0 3360 110 73 12 chr15 79892470 79892952 -5802802 - MER9 LTR ERVK 0 511 1 252 122 0 0 chr15 79893023 79893064 -5802690 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr15 79893157 79893183 -5802571 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 79893338 79893362 -5802392 + AT_rich Low_complexity Low_complexity 1 24 0 297 319 25 50 chr15 79894606 79894725 -5801029 - L2 LINE L2 -30 3242 3127 450 254 110 0 chr15 79894763 79894881 -5800873 - MIR SINE MIR -30 232 102 804 195 6 40 chr15 79895140 79895314 -5800440 + FRAM SINE Alu 9 176 0 516 195 0 0 chr15 79895708 79895795 -5799959 - Tigger5 DNA MER2_type 0 2323 2237 253 209 0 0 chr15 79895805 79895848 -5799906 - Tigger5 DNA MER2_type -2268 55 13 226 229 0 0 chr15 79895898 79895946 -5799808 - Tigger5 DNA MER2_type -2275 48 1 242 293 75 85 chr15 79896052 79896240 -5799514 + MIR3 SINE MIR 20 205 -3 201 369 28 28 chr15 79896490 79896631 -5799123 - MIR SINE MIR -108 154 14 356 176 0 93 chr15 79897075 79897183 -5798571 + MER103 DNA DNA 69 166 0 323 282 24 81 chr15 79897793 79898041 -5797713 + L1M4 LINE L1 2385 2618 -3528 500 196 10 0 chr15 79898188 79898285 -5797469 + MER39 LTR ERV1 6 103 -604 354 303 75 22 chr15 79900906 79901134 -5794620 + HAL1 LINE L1 2262 2501 -6 355 291 7 66 chr15 79901176 79901327 -5794427 + HAL1 LINE L1 1102 1243 -1264 189 243 97 58 chr15 79901382 79901485 -5794269 + L3 LINE CR1 572 678 -899 1838 129 11 4 chr15 79902515 79902831 -5792923 + AluSx SINE Alu 1 318 0 592 300 112 17 chr15 79903011 79903474 -5792280 + LTR33 LTR ERVL 10 516 -5 614 173 0 70 chr15 79903556 79903712 -5792042 - FRAM SINE Alu -11 165 21 2107 146 0 0 chr15 79904276 79904578 -5791176 - AluSx SINE Alu -10 302 1 2376 88 0 0 chr15 79905214 79905508 -5790246 - AluSg SINE Alu -16 294 1 253 211 141 128 chr15 79905723 79905879 -5789875 - MER5B DNA MER1_type -4 174 17 198 194 0 0 chr15 79906028 79906064 -5789690 - MER5A DNA MER1_type -95 94 59 2310 103 0 13 chr15 79906903 79907213 -5788541 + AluSx SINE Alu 3 308 -4 333 0 0 0 chr15 79907214 79907251 -5788503 + (TA)n Simple_repeat Simple_repeat 2 38 0 1069 215 174 16 chr15 79907743 79908064 -5787690 - MLT1A2 LTR MaLR -2 372 1 2217 103 0 3 chr15 79909090 79909382 -5786372 + AluSx SINE Alu 1 291 -21 501 139 0 61 chr15 79911275 79911440 -5784314 + (TCCC)n Simple_repeat Simple_repeat 2 156 0 2776 105 8 3 chr15 79912435 79912797 -5782957 - THE1B LTR MaLR 0 364 1 216 313 151 22 chr15 79913082 79913261 -5782493 - MIR SINE MIR -33 229 28 1844 171 0 3 chr15 79913562 79913867 -5781887 + AluJo SINE Alu 2 305 -7 903 78 0 47 chr15 79915154 79915282 -5780472 + AluSp/q SINE Alu 176 297 -16 187 222 0 0 chr15 79915957 79915993 -5779761 + L2 LINE L2 3214 3249 -23 408 205 18 62 chr15 79916378 79916490 -5779264 + MLT1D LTR MaLR 1 107 -398 2455 173 47 13 chr15 79916494 79916720 -5779034 + MLT1C LTR MaLR 1 218 -249 270 0 0 0 chr15 79916720 79916750 -5779004 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 2455 173 47 13 chr15 79916750 79916975 -5778779 + MLT1C LTR MaLR 218 467 0 1387 179 52 93 chr15 79917073 79917458 -5778296 + MLT1D LTR MaLR 128 496 -9 914 142 0 0 chr15 79917644 79917778 -5777976 + AluSq/x SINE Alu 1 134 -178 2180 118 3 0 chr15 79917779 79918083 -5777671 + AluSx SINE Alu 1 305 -7 2696 159 68 0 chr15 79918653 79919126 -5776628 - L1MB3 LINE L1 0 6183 5679 224 314 23 12 chr15 79920457 79920543 -5775211 + L3 LINE CR1 821 907 -670 2003 123 6 43 chr15 79920684 79921008 -5774746 - AluSx SINE Alu 0 312 1 1291 192 76 33 chr15 79921008 79921310 -5774444 - L1MC1 LINE L1 -8 6325 6011 578 201 47 12 chr15 79922200 79922351 -5773403 + MIR SINE MIR 9 154 -61 250 265 0 0 chr15 79922352 79922401 -5773353 + MER46C DNA MER2_type 3 51 -287 180 152 0 0 chr15 79922405 79922438 -5773316 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2306 175 5 31 chr15 79922440 79922640 -5773114 - MER47B DNA MER2_type -1911 412 208 2427 82 0 7 chr15 79922640 79922944 -5772810 - AluSc SINE Alu -7 302 1 2306 175 5 31 chr15 79922944 79923166 -5772588 - MER47B DNA MER2_type -2115 208 1 495 273 93 71 chr15 79923178 79923238 -5772516 + L1MC/D LINE L1 5290 5347 -774 1943 230 19 51 chr15 79923238 79923764 -5771990 + MLT1J LTR MaLR 3 511 0 495 273 93 71 chr15 79923764 79924081 -5771673 + L1MC/D LINE L1 5347 5675 -446 878 85 22 24 chr15 79924087 79924228 -5771526 + MSTA LTR MaLR 1 155 -209 499 174 0 11 chr15 79924895 79924987 -5770767 + MLT1B LTR MaLR 300 390 0 29 0 0 0 chr15 79925147 79925176 -5770578 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr15 79926735 79926759 -5768995 + (TATG)n Simple_repeat Simple_repeat 4 27 0 213 290 16 0 chr15 79927563 79927625 -5768129 - MER5B DNA MER1_type -114 64 2 2253 136 153 80 chr15 79927647 79928125 -5767629 - MLT2B2 LTR ERVL -2 513 1 234 244 23 23 chr15 79929601 79929663 -5766091 + (TATATG)n Simple_repeat Simple_repeat 3 67 -21 2653 165 19 0 chr15 79929663 79930081 -5765673 - MSTA LTR MaLR 0 428 3 234 244 23 23 chr15 79930081 79930104 -5765650 + (TATATG)n Simple_repeat Simple_repeat 66 88 0 7518 161 47 30 chr15 79930120 79932587 -5763167 - L1MA8 LINE L1 -2 6289 3790 557 302 85 8 chr15 79932630 79932888 -5762866 - LTR33 LTR ERVL 0 521 244 2248 115 72 26 chr15 79932972 79933320 -5762434 + THE1B LTR MaLR 1 364 0 11628 94 13 6 chr15 79933322 79934888 -5760866 + THE1B-int LTR MaLR 3 1580 0 2030 111 79 24 chr15 79934890 79935231 -5760523 + THE1B LTR MaLR 3 362 -2 246 105 0 0 chr15 79936142 79936180 -5759574 + (CA)n Simple_repeat Simple_repeat 1 38 0 285 245 113 53 chr15 79936446 79936597 -5759157 - MIR SINE MIR -73 189 30 3001 115 8 36 chr15 79937570 79937833 -5757921 - MER4C LTR ERV1 0 465 219 2038 118 3 3 chr15 79937833 79938138 -5757616 - AluSx SINE Alu -6 306 2 3001 115 8 36 chr15 79938138 79938352 -5757402 - MER4C LTR ERV1 -246 219 1 257 278 118 71 chr15 79938501 79938585 -5757169 + MIR3 SINE MIR 30 109 -99 2120 109 26 0 chr15 79938585 79938888 -5756866 - AluSx SINE Alu -1 311 1 257 278 118 71 chr15 79938888 79938972 -5756782 + MIR3 SINE MIR 109 206 -2 557 52 13 0 chr15 79939553 79939630 -5756124 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 2017 139 0 3 chr15 79939630 79939940 -5755814 - AluSq SINE Alu -4 309 1 21 0 0 0 chr15 79940141 79940162 -5755592 + AT_rich Low_complexity Low_complexity 1 21 0 2114 95 7 3 chr15 79940532 79940828 -5754926 - AluSq SINE Alu -16 297 1 2120 90 35 0 chr15 79941225 79941514 -5754240 - AluSg SINE Alu -11 299 1 653 171 40 74 chr15 79942053 79942228 -5753526 - MER69A DNA AcHobo -8 169 1 2118 117 0 0 chr15 79942692 79942991 -5752763 + AluSq SINE Alu 1 299 -14 2041 196 48 20 chr15 79943494 79943948 -5751806 + MLT1C LTR MaLR 1 467 0 231 328 269 0 chr15 79944334 79944505 -5751249 + MIR SINE MIR 44 260 -2 940 195 158 68 chr15 79945946 79946269 -5749485 - MLT2B1 LTR ERVL 0 520 169 600 191 40 6 chr15 79947271 79947444 -5748310 + L1MB7 LINE L1 3123 3301 -2845 4720 186 51 23 chr15 79947461 79948955 -5746799 + L1MB7 LINE L1 4617 6170 -14 781 213 48 43 chr15 79948958 79949165 -5746589 - L1MC4 LINE L1 -373 7669 7462 611 229 48 17 chr15 79949163 79949394 -5746360 - L1MEc LINE L1 -1778 4351 4114 * 589 250 104 0 chr15 79949400 79949564 -5746190 - L1MD2 LINE L1 -350 6009 5829 404 276 41 0 chr15 79949742 79949887 -5745867 - L1MEc LINE L1 -2524 3605 3455 528 303 78 24 chr15 79949891 79950528 -5745226 - L1MEc LINE L1 -4704 1606 935 450 300 67 28 chr15 79951088 79951268 -5744486 - L1MEc LINE L1 -5383 736 550 1883 130 39 0 chr15 79951268 79951553 -5744201 + AluSx SINE Alu 1 296 -16 2337 70 0 3 chr15 79951557 79951856 -5743898 + AluY SINE Alu 1 298 -13 341 331 61 67 chr15 79951974 79952303 -5743451 - L1MEc LINE L1 -5732 387 61 245 362 87 6 chr15 79952474 79952680 -5743074 + MIR SINE MIR 21 243 -19 * 419 240 0 146 chr15 79952670 79952903 -5742851 - L2 LINE L2 -25 3288 3090 264 280 13 0 chr15 79952933 79953008 -5742746 + L2 LINE L2 3196 3271 -1 210 216 42 105 chr15 79953495 79953685 -5742069 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 * 334 253 0 58 chr15 79953544 79953734 -5742020 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 218 260 59 12 chr15 79953666 79953835 -5741919 + (CGAG)n Simple_repeat Simple_repeat 4 180 0 * 559 168 18 44 chr15 79954332 79954445 -5741309 + MLT1D LTR MaLR 1 110 -395 462 215 0 11 chr15 79954478 79954571 -5741183 + L2 LINE L2 3221 3312 -1 189 282 51 13 chr15 79954580 79954658 -5741096 - MIR SINE MIR -64 198 118 1448 201 32 47 chr15 79954662 79955062 -5740692 + MLT1D LTR MaLR 112 374 0 711 230 91 8 chr15 79955119 79955371 -5740383 - L1MEd LINE L1 -3499 2630 2358 697 191 118 0 chr15 79955604 79955756 -5739998 + MER5A DNA MER1_type 17 186 -3 22 0 0 0 chr15 79955794 79955816 -5739938 + AT_rich Low_complexity Low_complexity 1 22 0 1161 269 160 52 chr15 79955847 79956436 -5739318 - L1MEd LINE L1 -5219 900 198 1908 151 0 13 chr15 79956436 79956741 -5739013 + AluSx SINE Alu 1 301 -11 1161 269 160 52 chr15 79956741 79956962 -5738792 - L1MEd LINE L1 -5921 198 2 321 370 123 32 chr15 79958947 79959198 -5736556 + L1MC/D LINE L1 5500 5773 -2035 258 234 47 0 chr15 79959874 79959938 -5735816 + L2 LINE L2 3204 3270 -2 477 295 85 56 chr15 79960461 79960852 -5734902 + MLT1J2 LTR MaLR 1 407 -2 873 216 12 0 chr15 79960921 79961088 -5734666 - FAM SINE Alu -6 43 1 1805 145 47 0 chr15 79961241 79961416 -5734338 - AluSx SINE Alu -1 311 115 183 42 0 0 chr15 79961416 79961440 -5734314 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1805 145 47 0 chr15 79961440 79961561 -5734193 - AluSx SINE Alu -197 115 1 2543 213 77 11 chr15 79961565 79962369 -5733385 - L1M4 LINE L1 -698 5486 4639 1064 172 56 64 chr15 79962381 79962648 -5733106 - AluJo SINE Alu -47 265 1 302 191 0 64 chr15 79962648 79962742 -5733012 - L1M4 LINE L1 -1495 4651 4564 * 8572 178 38 25 chr15 79962741 79965380 -5730374 - L1MA9 LINE L1 -277 7056 4214 1817 158 0 0 chr15 79965380 79965710 -5730044 - AluSx SINE Alu 0 330 1 8572 178 38 25 chr15 79965710 79965851 -5729903 - L1MA9 LINE L1 -3119 4214 4076 1124 151 10 10 chr15 79965876 79966068 -5729686 - AluSg/x SINE Alu -5 305 114 10908 222 49 28 chr15 79966075 79967723 -5728031 - L1MA9 LINE L1 -3762 3405 1794 1312 173 3 147 chr15 79967723 79968076 -5727678 - AluJb SINE Alu 0 302 1 10908 222 49 28 chr15 79968076 79970036 -5725718 - L1MA9 LINE L1 -5373 1794 2 353 190 50 25 chr15 79970038 79970159 -5725595 - L1M4 LINE L1 -2160 4222 4099 1141 229 17 0 chr15 79970219 79970450 -5725304 + MLT1D LTR MaLR 1 235 -270 312 176 0 0 chr15 79970469 79970520 -5725234 + MLT1D LTR MaLR 451 501 -4 3651 230 44 22 chr15 79970524 79970675 -5725079 - L1M4 LINE L1 -2289 4093 3947 1882 145 16 23 chr15 79970675 79970985 -5724769 - AluJo SINE Alu -4 308 1 3651 230 44 22 chr15 79970985 79972652 -5723102 - L1M4 LINE L1 -2435 3947 2074 363 44 0 0 chr15 79972699 79972744 -5723010 + (TA)n Simple_repeat Simple_repeat 2 46 0 4962 203 193 4 chr15 79972854 79974157 -5721597 - L1PBa LINE L1 -5219 1644 95 385 227 21 10 chr15 79974147 79974244 -5721510 - L1M4 LINE L1 -654 5530 5433 * 2149 160 13 3 chr15 79974248 79974624 -5721130 - L1MB3 LINE L1 -1 6182 5803 408 266 143 49 chr15 79974624 79974718 -5721036 + L1ME LINE L1 5282 5366 -796 2039 143 135 5 chr15 79974718 79975096 -5720658 + MSTA LTR MaLR 2 428 0 408 266 143 49 chr15 79975096 79975449 -5720305 + L1ME LINE L1 5366 5771 -391 446 260 64 23 chr15 79975965 79976138 -5719616 - Charlie8 DNA MER1_type -2234 183 4 354 236 127 18 chr15 79978385 79978495 -5717259 + MIR3 SINE MIR 33 154 -54 22 35 0 0 chr15 79979139 79979168 -5716586 + AT_rich Low_complexity Low_complexity 1 29 0 1953 110 10 23 chr15 79979563 79979864 -5715890 - AluSq SINE Alu -16 297 1 255 197 0 0 chr15 79980245 79980306 -5715448 - L1ME4a LINE L1 -12 6109 6049 1433 165 15 22 chr15 79980449 79980721 -5715033 - AluJo SINE Alu -10 302 33 190 219 0 0 chr15 79981355 79981387 -5714367 - MIR SINE MIR -99 109 78 443 295 86 13 chr15 79981443 79981758 -5713996 - L1M4 LINE L1 -3630 2516 2179 2299 78 3 7 chr15 79981759 79982067 -5713687 - AluSq SINE Alu -1 312 6 2411 206 92 42 chr15 79982282 79982780 -5712974 - L1ME3A LINE L1 -9 6161 5616 2228 142 122 5 chr15 79982780 79983182 -5712572 + LTR47A LTR ERVL 4 452 0 2411 206 92 42 chr15 79983182 79983390 -5712364 - L1ME3A LINE L1 -554 5616 5420 214 200 0 36 chr15 79983590 79983645 -5712109 + CT-rich Low_complexity Low_complexity 4 56 0 * 550 265 96 62 chr15 79983610 79983835 -5711919 - HAL1b LINE L1 -500 848 610 1057 243 18 0 chr15 79983835 79984053 -5711701 + MER58A DNA MER1_type 3 224 0 550 265 96 62 chr15 79984053 79984173 -5711581 - HAL1b LINE L1 -738 610 496 182 434 13 0 chr15 79984441 79984517 -5711237 - L3 LINE CR1 -1062 515 439 186 406 56 21 chr15 79984601 79984835 -5710919 - L3 LINE CR1 -1272 305 64 437 286 153 5 chr15 79984904 79985100 -5710654 - MIR SINE MIR -17 245 21 640 260 19 0 chr15 79986194 79986348 -5709406 + MER5A DNA MER1_type 3 159 -30 2297 108 3 0 chr15 79987305 79987600 -5708154 + AluSq SINE Alu 1 296 -17 255 271 226 15 chr15 79987761 79987894 -5707860 + L3 LINE CR1 1207 1367 -210 216 330 9 43 chr15 79987988 79988103 -5707651 - MIR SINE MIR 0 262 152 707 253 90 74 chr15 79988305 79988999 -5706755 + L2 LINE L2 2573 3294 -19 2369 91 7 3 chr15 79989488 79989795 -5705959 - AluSx SINE Alu -4 308 1 22 0 0 0 chr15 79990650 79990672 -5705082 + GC_rich Low_complexity Low_complexity 1 22 0 1564 105 5 0 chr15 79991863 79992063 -5703691 + AluSq SINE Alu 100 300 -13 2411 84 3 0 chr15 79993259 79993558 -5702196 + AluSg SINE Alu 6 305 -5 781 144 15 8 chr15 79993651 79993783 -5701971 - FLAM_C SINE Alu 0 133 1 187 315 99 18 chr15 79994771 79994882 -5700872 + L2 LINE L2 3153 3272 0 282 263 212 7 chr15 79995843 79995928 -5699826 + Charlie8 DNA MER1_type 1 67 -2350 6859 63 2 2 chr15 79995928 79997267 -5698487 - L1PA8 LINE L1 -13 6159 4822 282 263 212 7 chr15 79997267 79997318 -5698436 + Charlie8 DNA MER1_type 67 165 -2252 1697 165 11 11 chr15 79997781 79998054 -5697700 + AluJb SINE Alu 1 273 -39 192 298 0 105 chr15 79998140 79998254 -5697500 + MIR SINE MIR 114 215 -47 200 328 0 0 chr15 79998904 79998965 -5696789 - MIR SINE MIR -110 152 92 1990 194 62 0 chr15 79999575 79999976 -5695778 - MSTB LTR MaLR 0 426 1 216 0 0 0 chr15 80000778 80000802 -5694952 + (CAG)n Simple_repeat Simple_repeat 3 26 0 180 296 99 14 chr15 80002025 80002096 -5693658 - L2 LINE L2 -5 3267 3191 422 223 0 11 chr15 80002349 80002443 -5693311 - MIR SINE MIR -114 148 56 211 303 50 30 chr15 80003471 80003570 -5692184 + MIR SINE MIR 162 262 0 469 180 80 10 chr15 80006002 80006102 -5689652 - MIR SINE MIR -86 176 70 2364 76 0 0 chr15 80008495 80008785 -5686969 - AluY SINE Alu -21 290 1 1668 151 63 18 chr15 80009994 80010279 -5685475 + AluJo SINE Alu 1 298 -14 182 268 18 0 chr15 80011023 80011079 -5684675 + L2 LINE L2 1851 1907 -1407 317 298 68 19 chr15 80011179 80011340 -5684414 + L2 LINE L2 2090 2258 -1056 225 269 19 0 chr15 80011393 80011445 -5684309 - LTR16A LTR ERVL -169 281 229 * 854 278 131 20 chr15 80011442 80011863 -5683891 - MLT1G1 LTR MaLR -83 512 11 1694 190 56 10 chr15 80011874 80012319 -5683435 - MLT2B2 LTR ERVL 0 515 1 2739 296 94 33 chr15 80012702 80012857 -5682897 - HERV16 LTR ERVL -2004 2992 2848 2222 87 0 30 chr15 80012857 80013156 -5682598 + AluSc SINE Alu 1 290 -19 2739 296 94 33 chr15 80013156 80013739 -5682015 - HERV16 LTR ERVL -2148 2848 2302 3611 136 27 63 chr15 80013739 80013981 -5681773 - LTR62 LTR ERVK -1 718 469 2151 109 0 0 chr15 80013981 80014256 -5681498 + AluSx SINE Alu 16 290 -22 3611 136 27 63 chr15 80014256 80014700 -5681054 - LTR62 LTR ERVK -250 469 59 1949 88 8 23 chr15 80014700 80014962 -5680792 + AluSg SINE Alu 41 298 -12 3611 136 27 63 chr15 80014962 80015019 -5680735 - LTR62 LTR ERVK -660 59 1 2739 296 94 33 chr15 80015019 80015470 -5680284 - HERV16 LTR ERVL -2694 2302 1729 1892 301 87 33 chr15 80015575 80016022 -5679732 - HERV16 LTR ERVL -3423 1573 1151 2327 108 0 0 chr15 80016022 80016317 -5679437 - AluSx SINE Alu -17 295 1 1892 301 87 33 chr15 80016317 80016990 -5678764 - HERV16 LTR ERVL -3845 1151 393 316 193 80 34 chr15 80017221 80017309 -5678445 - HERV16 LTR ERVL -4904 92 1 532 314 46 46 chr15 80017689 80017924 -5677830 + L2 LINE L2 2396 2633 -681 1547 211 40 9 chr15 80017924 80018274 -5677480 - MLT1A1 LTR MaLR 0 365 5 532 314 46 46 chr15 80018274 80018404 -5677350 + L2 LINE L2 2632 2761 -553 2360 106 0 3 chr15 80018951 80019253 -5676501 - AluSx SINE Alu -11 301 1 1729 168 16 29 chr15 80019780 80020089 -5675665 + AluJo SINE Alu 1 305 -7 1775 123 134 0 chr15 80020228 80020496 -5675258 + AluSx SINE Alu 1 304 -8 201 167 24 0 chr15 80020787 80020829 -5674925 + CT-rich Low_complexity Low_complexity 4 46 0 230 294 113 40 chr15 80021550 80021727 -5674027 - MARNA DNA Mariner -343 243 54 2298 113 0 0 chr15 80022544 80022844 -5672910 + AluSx SINE Alu 1 300 -12 258 262 24 0 chr15 80022987 80023071 -5672683 + L1MCa LINE L1 1412 1497 -4929 751 129 73 0 chr15 80023388 80023512 -5672242 - FLAM_C SINE Alu 0 133 1 2223 223 49 4 chr15 80024323 80024852 -5670902 + MER74A LTR ERVL 6 558 0 195 313 31 16 chr15 80025526 80025654 -5670100 - L2 LINE L2 -251 3021 2892 233 288 75 0 chr15 80025707 80025787 -5669967 + L2 LINE L2 3228 3313 0 184 311 48 58 chr15 80026112 80026215 -5669539 - MIR SINE MIR -89 119 18 222 250 19 0 chr15 80026643 80026695 -5669059 - L2 LINE L2 -9 3304 3252 339 207 61 12 chr15 80026732 80026814 -5668940 - L2 LINE L2 -34 3238 3153 1215 196 71 60 chr15 80027285 80027667 -5668087 - MLT1B LTR MaLR -4 386 1 300 278 43 43 chr15 80028524 80028639 -5667115 + MIR SINE MIR 123 237 -25 284 252 78 9 chr15 80029761 80029876 -5665878 + L1MCa LINE L1 1815 1937 -4491 5347 143 40 13 chr15 80029971 80031516 -5664238 + L1MA8 LINE L1 4351 5959 -332 2360 107 0 0 chr15 80031516 80031815 -5663939 + AluSx SINE Alu 1 299 -13 5347 143 40 13 chr15 80031815 80032137 -5663617 + L1MA8 LINE L1 5959 6271 -20 2106 110 46 0 chr15 80032173 80032455 -5663299 + AluSg1 SINE Alu 1 295 -14 344 306 38 9 chr15 80032713 80032884 -5662870 + MIR SINE MIR 9 186 -63 204 111 0 0 chr15 80083663 80083699 -5612055 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 279 0 0 0 chr15 80083698 80083729 -5612025 + (CA)n Simple_repeat Simple_repeat 2 32 0 845 229 153 29 chr15 80086118 80086225 -5609529 - HAL1 LINE L1 -1075 1432 1340 2293 77 24 10 chr15 80086225 80086522 -5609232 - AluSg SINE Alu -9 301 1 845 229 153 29 chr15 80086522 80086754 -5609000 - HAL1 LINE L1 -1167 1340 1051 722 177 7 75 chr15 80086761 80086908 -5608846 - FLAM_C SINE Alu -5 138 2 879 274 67 36 chr15 80086922 80087201 -5608553 - HAL1 LINE L1 -1465 1042 748 666 153 196 53 chr15 80087201 80087317 -5608437 - MER20 DNA MER1_type -3 216 118 734 83 0 30 chr15 80087317 80087450 -5608304 + (CA)n Simple_repeat Simple_repeat 1 129 0 666 153 196 53 chr15 80087450 80087522 -5608232 - MER20 DNA MER1_type -101 118 1 879 274 67 36 chr15 80087522 80087600 -5608154 - HAL1 LINE L1 -1759 748 674 290 125 0 0 chr15 80088412 80088460 -5607294 + L1MB8 LINE L1 6131 6178 0 216 0 0 0 chr15 80088858 80088882 -5606872 + (TG)n Simple_repeat Simple_repeat 2 25 0 1994 133 36 112 chr15 80089076 80089323 -5606431 - MLT1B LTR MaLR -2 388 185 1522 187 7 14 chr15 80089323 80089612 -5606142 - AluJo SINE Alu -22 290 4 1994 133 36 112 chr15 80089612 80089784 -5605970 - MLT1B LTR MaLR -205 185 1 2428 83 0 16 chr15 80089828 80090142 -5605612 - AluSc SINE Alu 0 309 1 1462 167 71 14 chr15 80090177 80090459 -5605295 + MER2 DNA MER2_type 23 320 -25 2110 126 3 0 chr15 80090629 80090930 -5604824 + AluSx SINE Alu 1 302 -10 1184 199 65 18 chr15 80091488 80091764 -5603990 - MLT1A1 LTR MaLR 0 365 77 979 133 0 0 chr15 80091764 80091907 -5603847 - FRAM SINE Alu -16 160 18 355 259 35 0 chr15 80091907 80091992 -5603762 - MLT1A1 LTR MaLR -286 88 1 372 329 110 57 chr15 80092056 80092302 -5603452 - MIR SINE MIR 0 262 4 1456 138 112 45 chr15 80092494 80092763 -5602991 - AluJo SINE Alu -4 308 22 2163 125 0 0 chr15 80092780 80093069 -5602685 - AluSc SINE Alu -12 297 9 531 268 144 66 chr15 80093098 80093613 -5602141 - L1ME4a LINE L1 -265 5856 5308 268 286 0 0 chr15 80094018 80094088 -5601666 + MER117 DNA MER1_type 1 70 -127 2003 133 147 31 chr15 80094181 80094563 -5601191 - MSTA LTR MaLR -2 426 1 254 292 71 18 chr15 80094719 80094832 -5600922 - MIR3 SINE MIR -79 129 11 * 350 225 14 0 chr15 80094814 80094885 -5600869 + MIR SINE MIR 74 145 -63 316 253 46 0 chr15 80095378 80095465 -5600289 + MIR SINE MIR 28 118 -144 933 224 48 84 chr15 80095472 80095927 -5599827 - MLT1J LTR MaLR -2 509 4 266 228 0 0 chr15 80095933 80095990 -5599764 + MIR SINE MIR 122 178 -84 384 219 246 0 chr15 80096024 80096138 -5599616 - Charlie1 DNA MER1_type -2619 142 1 239 193 88 0 chr15 80096186 80096243 -5599511 - LTR37B LTR ERV1 -398 70 9 2953 183 72 13 chr15 80096449 80097050 -5598704 + MER92B LTR ERV1 1 636 0 282 129 81 32 chr15 80097660 80097722 -5598032 - MLT2B1 LTR ERVL 0 520 456 256 160 20 0 chr15 80097721 80097771 -5597983 - MLT2B1 LTR ERVL -6 514 464 * 592 73 0 55 chr15 80097815 80097925 -5597829 + (TCTA)n Simple_repeat Simple_repeat 4 107 0 934 245 34 13 chr15 80097939 80098176 -5597578 - MLT2B3 LTR ERVL -20 534 293 2322 131 48 14 chr15 80098230 80098582 -5597172 - THE1B LTR MaLR 0 364 1 731 78 29 0 chr15 80098893 80098996 -5596758 - AluSp/q SINE Alu -9 304 199 537 239 75 32 chr15 80099208 80099396 -5596358 + MER3 DNA MER1_type 9 204 -5 1473 189 66 0 chr15 80099473 80099588 -5596166 + AluJb SINE Alu 1 107 -205 219 88 0 0 chr15 80099588 80099622 -5596132 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1473 189 66 0 chr15 80099622 80099792 -5595962 + AluJb SINE Alu 107 305 -7 324 287 202 30 chr15 80099964 80100295 -5595459 - L1ME4a LINE L1 -215 5906 5519 564 306 57 40 chr15 80101139 80101436 -5594318 + LTR16A1 LTR ERVL 147 448 -9 472 316 143 14 chr15 80102398 80102819 -5592935 + L1MC/D LINE L1 5347 5821 -1987 21 36 0 0 chr15 80103132 80103160 -5592594 + AT_rich Low_complexity Low_complexity 1 28 0 231 298 53 11 chr15 80103197 80103291 -5592463 - MIR SINE MIR -92 116 19 2008 108 0 14 chr15 80103929 80104206 -5591548 + AluSc SINE Alu 35 307 -2 207 100 0 0 chr15 80105302 80105332 -5590422 + (TG)n Simple_repeat Simple_repeat 2 31 0 31 68 0 0 chr15 80106919 80106978 -5588776 + AT_rich Low_complexity Low_complexity 1 59 0 733 80 0 0 chr15 80107171 80107259 -5588495 + L1P LINE L1 11 98 -6048 * 30998 53 3 0 chr15 80107257 80111109 -5584645 + L1P LINE L1 623 4486 -1660 1159 38 0 0 chr15 80111227 80111359 -5584395 - AluSg1 SINE Alu -177 132 1 26 50 0 0 chr15 80111857 80111897 -5583857 + GC_rich Low_complexity Low_complexity 1 40 0 334 288 144 61 chr15 80111925 80112370 -5583384 - L1M2 LINE L1 -5466 1383 902 2061 124 7 7 chr15 80118051 80118349 -5577405 - AluSx SINE Alu -11 301 4 1909 140 30 3 chr15 80119001 80119301 -5576453 + AluSx SINE Alu 1 308 -4 401 236 188 0 chr15 80119422 80119566 -5576188 - MIR SINE MIR -22 240 70 1936 125 2 174 chr15 80119887 80120295 -5575459 - LTR14B LTR ERVK 0 608 7 310 287 79 118 chr15 80120824 80120880 -5574874 - L2 LINE L2 -87 3185 3128 1796 160 0 14 chr15 80120880 80121174 -5574580 + AluJb SINE Alu 1 290 -22 310 287 79 118 chr15 80121174 80121396 -5574358 - L2 LINE L2 -144 3128 2918 534 239 37 12 chr15 80121760 80121923 -5573831 - MER74A LTR ERVL -80 478 312 * 679 165 12 104 chr15 80121919 80122083 -5573671 - MER74B LTR ERVL -472 150 2 381 205 240 95 chr15 80122112 80122412 -5573342 - L1MEc LINE L1 -4841 1400 1051 1717 163 14 0 chr15 80122412 80122689 -5573065 - AluSx SINE Alu -31 281 1 381 205 240 95 chr15 80122689 80122781 -5572973 - L1MEc LINE L1 -5190 1051 974 7883 34 1 2 chr15 80122890 80124671 -5571083 + L1PA5 LINE L1 4385 6146 -8 280 339 71 80 chr15 80125379 80125804 -5569950 + L2 LINE L2 2852 3272 0 5037 86 0 7 chr15 80127945 80128631 -5567123 + L1PA12 LINE L1 5405 6085 -83 30 59 0 0 chr15 80129768 80129819 -5565935 + AT_rich Low_complexity Low_complexity 1 51 0 1163 297 102 66 chr15 80130723 80131797 -5563957 - L2 LINE L2 0 3313 2183 204 231 0 19 chr15 80132418 80132470 -5563284 + CT-rich Low_complexity Low_complexity 1 51 0 210 333 0 0 chr15 80133399 80133462 -5562292 + L2 LINE L2 2271 2333 -981 181 351 85 24 chr15 80133584 80133749 -5562005 + MIR SINE MIR 14 188 -74 4512 179 17 24 chr15 80136257 80137134 -5558620 - L1MC2 LINE L1 -111 6233 5363 2090 114 0 33 chr15 80137190 80137496 -5558258 - AluSx SINE Alu -16 296 1 24 53 0 0 chr15 80137603 80137641 -5558113 + AT_rich Low_complexity Low_complexity 1 38 0 818 190 28 28 chr15 80137913 80138092 -5557662 - L1PA16 LINE L1 -4 6162 5984 2336 92 0 13 chr15 80138296 80138600 -5557154 + AluSc SINE Alu 1 300 -9 2587 181 166 17 chr15 80139624 80139760 -5555994 + Charlie1 DNA MER1_type 1426 1540 -1221 1819 164 14 3 chr15 80139760 80140052 -5555702 + AluJb SINE Alu 1 295 -17 2587 181 166 17 chr15 80140052 80140607 -5555147 + Charlie1 DNA MER1_type 1540 2220 -541 1185 182 0 15 chr15 80140611 80140814 -5554940 + AluJb SINE Alu 87 286 -26 247 25 50 0 chr15 80140814 80140854 -5554900 + (TA)n Simple_repeat Simple_repeat 2 43 0 934 183 245 9 chr15 80140876 80141199 -5554555 + Charlie1 DNA MER1_type 2363 2761 0 2366 96 3 0 chr15 80141665 80141967 -5553787 + AluSq SINE Alu 1 303 -10 204 40 0 0 chr15 80142096 80142121 -5553633 + (CA)n Simple_repeat Simple_repeat 2 26 0 2061 105 4 0 chr15 80143289 80143566 -5552188 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr15 80143566 80143589 -5552165 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 342 0 0 0 chr15 80143749 80143787 -5551967 + (CA)n Simple_repeat Simple_repeat 2 39 0 236 26 0 53 chr15 80145029 80145067 -5550687 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2043 78 26 33 chr15 80145138 80145444 -5550310 + AluSx SINE Alu 3 306 -6 329 283 123 9 chr15 80146041 80146147 -5549607 + MIR SINE MIR 12 129 -133 278 299 41 0 chr15 80147503 80147600 -5548154 + MIR SINE MIR 47 147 -115 1247 170 21 29 chr15 80147677 80147953 -5547801 + AluJo SINE Alu 44 317 0 668 278 87 12 chr15 80148329 80148570 -5547184 - L1ME LINE L1 -382 5780 5522 1932 159 0 7 chr15 80148734 80149030 -5546724 + AluJo SINE Alu 1 294 -18 1962 152 3 0 chr15 80149065 80149355 -5546399 + AluSg SINE Alu 1 291 -19 2456 184 16 2 chr15 80149369 80149865 -5545889 + L1 LINE L1 3275 3777 -2369 1653 160 3 21 chr15 80150707 80150994 -5544760 + AluJo SINE Alu 10 291 -21 939 135 25 6 chr15 80153106 80153269 -5542485 + AluY SINE Alu 129 294 -17 3246 153 51 16 chr15 80153270 80153861 -5541893 + Tigger3(Golem) DNA MER2_type 2386 3002 -27 2280 124 55 3 chr15 80153861 80154207 -5541547 + THE1B LTR MaLR 1 364 0 3246 153 51 16 chr15 80154207 80154237 -5541517 + Tigger3(Golem) DNA MER2_type 3002 3029 0 313 311 28 44 chr15 80155062 80155242 -5540512 + MLT1L LTR MaLR 113 289 -326 1707 207 89 48 chr15 80155293 80155776 -5539978 - MLT1D LTR MaLR -2 503 1 654 192 25 0 chr15 80156331 80156451 -5539303 - AluJb SINE Alu -188 124 2 252 265 15 0 chr15 80156524 80156592 -5539162 + MER112 DNA MER1_type 7 75 -185 690 342 102 32 chr15 80156651 80157409 -5538345 + L2 LINE L2 1501 2311 -1003 225 302 0 0 chr15 80157473 80157536 -5538218 - MIR SINE MIR -135 127 65 2491 79 0 0 chr15 80159469 80159774 -5535980 + AluY SINE Alu 1 305 -6 193 377 8 15 chr15 80162598 80162728 -5533026 - MIR SINE MIR -63 145 17 641 283 77 27 chr15 80163584 80163920 -5531834 + L1MC4a LINE L1 5691 6043 -1765 717 142 37 19 chr15 80164644 80164937 -5530817 + CT-rich Low_complexity Low_complexity 1 298 0 1525 199 4 7 chr15 80165054 80165330 -5530424 - AluJo SINE Alu -37 275 1 705 228 7 0 chr15 80166074 80166219 -5529535 - MER5A DNA MER1_type -30 159 14 2181 112 0 0 chr15 80166544 80166860 -5528894 - AluSx SINE Alu 0 316 1 230 220 0 20 chr15 80167175 80167225 -5528529 + (CA)n Simple_repeat Simple_repeat 2 50 0 982 173 0 0 chr15 80167668 80167824 -5527930 + 7SLRNA srpRNA srpRNA 94 249 -71 180 77 0 0 chr15 80168923 80168949 -5526805 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 259 309 24 8 chr15 80171390 80171513 -5524241 - L1MEc LINE L1 -5684 712 588 648 261 68 5 chr15 80171630 80172003 -5523751 - L1MEc LINE L1 -5842 554 136 522 302 24 14 chr15 80172402 80172614 -5523140 + L2 LINE L2 427 640 -2674 836 294 113 13 chr15 80172791 80173250 -5522504 - L2 LINE L2 -1607 1707 1203 281 278 87 90 chr15 80173266 80173337 -5522417 + L1MC4a LINE L1 4879 4949 -1197 837 147 8 0 chr15 80173337 80173466 -5522288 - FLAM_C SINE Alu -3 130 1 281 278 87 90 chr15 80173466 80173682 -5522072 + L1MC4a LINE L1 4949 5165 -981 5377 219 216 25 chr15 80173736 80174863 -5520891 + L1MC4a LINE L1 5256 6166 -1642 180 0 0 0 chr15 80174863 80174883 -5520871 + (TG)n Simple_repeat Simple_repeat 1 20 0 5377 219 216 25 chr15 80174883 80175897 -5519857 + L1MC4a LINE L1 6166 7806 -2 192 135 0 0 chr15 80180883 80180920 -5514834 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 200 0 0 chr15 80180915 80180965 -5514789 + (TA)n Simple_repeat Simple_repeat 2 51 0 252 0 0 0 chr15 80181283 80181311 -5514443 + (CTG)n Simple_repeat Simple_repeat 1 28 0 223 191 79 16 chr15 80181830 80181893 -5513861 - MIR SINE MIR -78 184 118 2103 110 20 13 chr15 80183273 80183573 -5512181 + AluSx SINE Alu 1 302 -10 636 290 148 33 chr15 80184363 80185007 -5510747 + L2 LINE L2 2246 2963 -351 372 240 0 0 chr15 80185124 80185199 -5510555 + L2 LINE L2 3236 3310 -3 327 292 83 71 chr15 80188262 80188430 -5507324 + MIR SINE MIR 43 212 -50 1788 106 20 4 chr15 80191136 80191390 -5504364 + AluSg SINE Alu 44 301 -9 3653 238 95 120 chr15 80192103 80193288 -5502466 - L1MC4a LINE L1 0 8603 7390 1825 149 10 0 chr15 80193288 80193576 -5502178 - AluJo SINE Alu -16 296 6 3653 238 95 120 chr15 80193576 80193597 -5502157 - L1MC4a LINE L1 -1213 7390 7370 351 0 0 0 chr15 80193597 80193636 -5502118 + (TG)n Simple_repeat Simple_repeat 2 40 0 3653 238 95 120 chr15 80193636 80193752 -5502002 - L1MC4a LINE L1 -1233 7370 7253 911 112 22 0 chr15 80193752 80193886 -5501868 + AluSg SINE Alu 1 137 -173 3653 238 95 120 chr15 80193886 80193919 -5501835 - L1MC4a LINE L1 -1350 7253 7221 297 0 0 0 chr15 80193919 80193952 -5501802 + (CA)n Simple_repeat Simple_repeat 2 34 0 3653 238 95 120 chr15 80193952 80194836 -5500918 - L1MC4a LINE L1 -1382 7221 6316 891 112 8 15 chr15 80194836 80194970 -5500784 - FLAM_C SINE Alu 0 133 1 3653 238 95 120 chr15 80194970 80195095 -5500659 - L1MC4a LINE L1 -2287 6316 6189 2423 84 3 0 chr15 80195095 80195394 -5500360 - AluSp SINE Alu -13 300 1 3653 238 95 120 chr15 80195394 80197166 -5498588 - L1MC4a LINE L1 -2414 6189 4364 2827 234 105 13 chr15 80197171 80198024 -5497730 - L1MEc LINE L1 -3019 3922 3149 2353 92 3 0 chr15 80198024 80198316 -5497438 - AluSp SINE Alu -12 301 9 2827 234 105 13 chr15 80198316 80198331 -5497423 - L1MEc LINE L1 -3792 3149 3137 477 0 0 0 chr15 80198331 80198384 -5497370 + (CA)n Simple_repeat Simple_repeat 2 54 0 2827 234 105 13 chr15 80198384 80198777 -5496977 - L1MEc LINE L1 -3804 3137 2562 1692 146 67 37 chr15 80198784 80199160 -5496594 + L1MC3 LINE L1 6711 7097 -688 253 197 14 56 chr15 80199160 80199231 -5496523 + MLT1F1 LTR MaLR 35 102 -465 388 185 59 50 chr15 80199237 80199356 -5496398 + L1MC3 LINE L1 7171 7290 -495 1191 196 9 0 chr15 80199356 80199581 -5496173 + MER46A DNA MER2_type 1 227 -9 2457 164 27 4 chr15 80199588 80200065 -5495689 + L1MC3 LINE L1 7289 7776 -9 720 237 137 46 chr15 80200074 80200728 -5495026 - L1MCa LINE L1 -4232 2710 1659 474 277 134 25 chr15 80200745 80200983 -5494771 - L1MCa LINE L1 -5186 1237 974 349 311 55 68 chr15 80201182 80201401 -5494353 - L1MCa LINE L1 -5629 793 578 268 256 45 30 chr15 80201425 80201558 -5494196 - L1MCa LINE L1 -6227 196 62 199 224 219 38 chr15 80201621 80201766 -5493988 + MIR SINE MIR 45 216 -46 2483 80 0 0 chr15 80202206 80202508 -5493246 - AluSx SINE Alu -10 302 1 450 183 43 9 chr15 80202691 80202806 -5492948 + LTR9B LTR ERV1 445 563 -81 180 0 0 0 chr15 80202806 80202826 -5492928 + (A)n Simple_repeat Simple_repeat 1 20 0 2243 142 21 19 chr15 80202843 80203273 -5492481 - L1MA4A LINE L1 -29 6274 5844 936 119 233 10 chr15 80203802 80203995 -5491759 - MER46A DNA MER2_type 0 236 1 2089 136 0 0 chr15 80204146 80204448 -5491306 + AluSx SINE Alu 1 302 -10 2227 89 0 0 chr15 80205138 80205451 -5490303 - AluY SINE Alu 0 311 1 277 275 37 37 chr15 80205549 80205658 -5490096 + MLT1K LTR MaLR 458 566 -22 1313 166 53 75 chr15 80206701 80207020 -5488734 + AluJb SINE Alu 1 312 0 4531 99 116 5 chr15 80207020 80207840 -5487914 + L1PBa LINE L1 2097 3011 -3851 611 241 0 12 chr15 80207834 80208004 -5487750 + L1 LINE L1 4086 4253 -2609 * 1061 216 52 85 chr15 80208113 80208478 -5487276 + HAL1 LINE L1 1443 1795 -712 311 238 53 95 chr15 80208530 80208585 -5487169 + HAL1 LINE L1 1939 1995 -512 2401 53 0 0 chr15 80208585 80208915 -5486839 - AluY SINE Alu 0 330 1 311 238 53 95 chr15 80208915 80209047 -5486707 + HAL1 LINE L1 1995 2119 -388 1505 171 80 75 chr15 80209189 80209575 -5486179 + MLT1B LTR MaLR 3 390 0 315 130 0 0 chr15 80209604 80209658 -5486096 + (TG)n Simple_repeat Simple_repeat 1 54 0 331 311 48 12 chr15 80209728 80209976 -5485778 + HAL1 LINE L1 2247 2503 -4 379 272 132 52 chr15 80210558 80210771 -5484983 + MIR SINE MIR 23 252 -10 1015 198 203 17 chr15 80210833 80211268 -5484486 + MER39 LTR ERV1 7 516 -137 1322 183 27 40 chr15 80211268 80211568 -5484186 + MER4C LTR ERV1 1 296 -169 284 143 32 0 chr15 80211552 80211615 -5484139 + MER4C LTR ERV1 232 296 -169 * 284 143 32 0 chr15 80211599 80211662 -5484092 + MER4C LTR ERV1 232 296 -169 * 1155 172 13 9 chr15 80211646 80211879 -5483875 + MER4C LTR ERV1 232 465 0 610 170 89 0 chr15 80211882 80212017 -5483737 + MER39 LTR ERV1 561 707 0 858 153 0 0 chr15 80212078 80212196 -5483558 - FLAM_C SINE Alu -15 118 1 2255 128 0 0 chr15 80212198 80212504 -5483250 - AluSg SINE Alu -4 306 1 257 246 112 82 chr15 80212558 80212648 -5483106 - L2 LINE L2 -54 3259 3173 542 100 0 0 chr15 80212648 80212728 -5483026 - MADE1 DNA Mariner 0 80 1 257 246 112 82 chr15 80212728 80212869 -5482885 - L2 LINE L2 -140 3173 3021 729 137 0 0 chr15 80212969 80213071 -5482683 - FLAM_C SINE Alu -26 117 16 193 267 119 48 chr15 80213083 80213293 -5482461 - L2 LINE L2 -245 3068 2844 409 254 88 29 chr15 80213438 80213710 -5482044 + LTR16A LTR ERVL 16 303 -147 1359 213 25 23 chr15 80213968 80214321 -5481433 - MLT1A1 LTR MaLR -11 354 1 432 332 36 7 chr15 80214321 80214628 -5481126 + HERV16 LTR ERVL 177 492 -4504 438 273 56 23 chr15 80215342 80215558 -5480196 + LTR16A LTR ERVL 55 277 -173 305 328 25 0 chr15 80215661 80215780 -5479974 - L1MC/D LINE L1 -2006 5802 5681 1505 157 51 0 chr15 80215787 80216080 -5479674 - MSTA LTR MaLR 0 428 121 2170 119 3 0 chr15 80216129 80216423 -5479331 + AluSq SINE Alu 1 295 -18 581 237 24 12 chr15 80216880 80217049 -5478705 - LTR41 LTR ERVL -594 179 9 311 312 64 0 chr15 80217208 80217317 -5478437 - MIR SINE MIR -33 229 114 24 0 0 0 chr15 80217532 80217556 -5478198 + AT_rich Low_complexity Low_complexity 1 24 0 1681 169 14 0 chr15 80218506 80218784 -5476970 - AluJo SINE Alu 0 312 31 201 288 0 50 chr15 80219014 80219094 -5476660 + MIR SINE MIR 67 142 -120 370 326 7 21 chr15 80219438 80219579 -5476175 + MIR SINE MIR 69 207 -55 23 54 0 0 chr15 80220027 80220064 -5475690 + AT_rich Low_complexity Low_complexity 1 37 0 347 326 34 27 chr15 80221043 80221190 -5474564 + MIR SINE MIR 93 240 -22 * 514 298 110 14 chr15 80221169 80221379 -5474375 + MIR SINE MIR 10 236 -26 710 209 8 0 chr15 80221895 80222024 -5473730 - FLAM_C SINE Alu -3 130 1 1014 264 71 45 chr15 80222176 80222668 -5473086 - MLT1D LTR MaLR 0 505 1 2393 49 7 10 chr15 80222888 80223192 -5472562 - AluY SINE Alu -8 303 1 25 0 0 0 chr15 80224360 80224385 -5471369 + AT_rich Low_complexity Low_complexity 1 25 0 1812 171 0 3 chr15 80225558 80225862 -5469892 + L1PA16 LINE L1 5855 6157 -9 23 0 0 0 chr15 80226384 80226407 -5469347 + AT_rich Low_complexity Low_complexity 1 23 0 198 281 16 16 chr15 80227831 80227895 -5467859 - MIR3 SINE MIR -12 196 133 590 303 25 23 chr15 80228790 80229033 -5466721 - MIR SINE MIR -3 259 16 521 113 17 61 chr15 80229446 80229795 -5465959 + (TA)n Simple_repeat Simple_repeat 1 333 0 2346 67 27 0 chr15 80229877 80230175 -5465579 + AluY SINE Alu 1 306 -5 519 240 112 11 chr15 80230607 80230874 -5464880 + Charlie4a DNA MER1_type 127 420 -88 1329 222 58 32 chr15 80231125 80231572 -5464182 - MER74B LTR ERVL -87 476 19 22 0 0 0 chr15 80231587 80231609 -5464145 + GC_rich Low_complexity Low_complexity 1 22 0 468 35 0 0 chr15 80231610 80231668 -5464086 + (CA)n Simple_repeat Simple_repeat 2 59 0 438 20 0 0 chr15 80232361 80232412 -5463342 + (TA)n Simple_repeat Simple_repeat 1 51 0 2247 94 7 0 chr15 80232998 80233305 -5462449 - AluY SINE Alu -2 309 1 191 273 0 23 chr15 80233443 80233487 -5462267 - L2 LINE L2 -26 3287 3245 238 280 0 86 chr15 80233654 80233747 -5462007 + L2 LINE L2 3186 3270 -2 246 207 17 0 chr15 80234491 80234549 -5461205 + L1P LINE L1 2749 2807 -3339 23 103 0 0 chr15 80235738 80235767 -5459987 + AT_rich Low_complexity Low_complexity 1 29 0 215 200 50 33 chr15 80235767 80235887 -5459867 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 395 218 29 29 chr15 80235988 80236158 -5459596 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 229 283 35 26 chr15 80236444 80236557 -5459197 - L1M4 LINE L1 -2323 3823 3710 501 274 17 6 chr15 80236593 80236772 -5458982 - L1MB7 LINE L1 -12 6172 5992 27 96 0 0 chr15 80236956 80237039 -5458715 + AT_rich Low_complexity Low_complexity 1 83 0 970 32 16 0 chr15 80237183 80237336 -5458418 - AluY SINE Alu 0 311 157 1756 146 3 21 chr15 80444831 80445118 -5250636 - AluJo SINE Alu -21 291 10 214 182 23 0 chr15 80445477 80445521 -5250233 + C-rich Low_complexity Low_complexity 3 47 0 347 301 98 2 chr15 80447049 80447246 -5248508 - L1MCa LINE L1 -1311 1476 1277 312 240 140 73 chr15 80447563 80447742 -5248012 + MIR SINE MIR 2 192 -70 269 344 119 0 chr15 80448688 80448839 -5246915 + MIR3 SINE MIR 31 199 -9 330 256 68 17 chr15 80448846 80448963 -5246791 + L2 LINE L2 3188 3310 -3 191 240 40 0 chr15 80450852 80450902 -5244852 + MIR SINE MIR 96 147 -61 194 217 22 0 chr15 80451367 80451413 -5244341 + MIR SINE MIR 103 150 -58 1996 151 0 30 chr15 80451943 80452248 -5243506 + AluSx SINE Alu 2 297 -15 255 305 76 15 chr15 80452299 80452430 -5243324 + MIR SINE MIR 96 234 -28 1112 123 7 0 chr15 80453169 80453323 -5242431 + 7SLRNA srpRNA srpRNA 95 249 -71 180 77 0 0 chr15 80454434 80454460 -5241294 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 201 39 0 0 chr15 80474048 80474074 -5221680 + (TG)n Simple_repeat Simple_repeat 2 27 0 662 193 35 35 chr15 80475807 80475875 -5219879 + LTR54B LTR ERV1 1 68 -430 1806 132 54 46 chr15 80475875 80476247 -5219507 + THE1C LTR MaLR 1 375 0 662 193 35 35 chr15 80476247 80476323 -5219431 + LTR54B LTR ERV1 67 145 -353 1079 121 55 10 chr15 80476404 80476603 -5219151 + LTR54 LTR ERV1 303 510 0 1271 232 139 52 chr15 80476623 80477213 -5218541 - LTR50 LTR ERVL -131 664 24 203 313 66 66 chr15 80477230 80477412 -5218342 - MIR3 SINE MIR -6 202 21 2478 192 9 29 chr15 80477614 80478166 -5217588 - L1MD3 LINE L1 0 7995 7455 2289 76 34 0 chr15 80480213 80480541 -5215213 + L1PA13 LINE L1 5825 6163 0 214 300 79 42 chr15 80481555 80481795 -5213959 + L3b LINE CR1 1110 1358 -225 2148 130 0 3 chr15 80481846 80482146 -5213608 + AluSx SINE Alu 1 299 -13 589 278 71 26 chr15 80483946 80484255 -5211499 - L1MC4a LINE L1 -1795 6013 5691 313 343 79 11 chr15 80484481 80484659 -5211095 + L1ME4a LINE L1 5928 6117 -4 190 335 28 35 chr15 80485131 80485273 -5210481 + MIR SINE MIR 21 160 -63 216 0 0 0 chr15 80487182 80487206 -5208548 + (T)n Simple_repeat Simple_repeat 1 24 0 2448 82 0 0 chr15 80488100 80488394 -5207360 - AluY SINE Alu -17 294 1 226 318 0 0 chr15 80490323 80490386 -5205368 + MIR SINE MIR 65 127 -135 913 344 103 32 chr15 80490450 80491207 -5204547 - L2 LINE L2 -1003 2311 1501 260 265 15 0 chr15 80491266 80491334 -5204420 - MER112 DNA MER1_type -185 75 7 686 186 47 0 chr15 80491407 80491536 -5204218 + AluSq/x SINE Alu 2 136 -177 805 211 72 38 chr15 80492083 80492320 -5203434 + MLT1D LTR MaLR 1 245 -260 419 0 20 0 chr15 80492629 80492680 -5203074 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1400 144 40 5 chr15 80492681 80492903 -5202851 - AluSx SINE Alu -82 230 1 305 293 0 0 chr15 80493158 80493233 -5202521 + L2 LINE L2 2230 2304 -1010 27 0 0 0 chr15 80493448 80493475 -5202279 + AT_rich Low_complexity Low_complexity 1 27 0 30 59 0 0 chr15 80493866 80493917 -5201837 + AT_rich Low_complexity Low_complexity 1 51 0 26 50 0 0 chr15 80494041 80494081 -5201673 + AT_rich Low_complexity Low_complexity 1 40 0 1481 155 0 5 chr15 80494145 80494364 -5201390 - AluSx SINE Alu -92 220 3 4686 124 16 23 chr15 80495005 80495746 -5200008 + L1PB1 LINE L1 5416 6151 0 194 154 128 0 chr15 80495975 80496014 -5199740 - MIR SINE MIR -8 254 211 323 277 247 6 chr15 80496778 80496944 -5198810 - MIR SINE MIR -6 256 51 244 314 21 82 chr15 80497306 80497500 -5198254 + L2 LINE L2 1561 1742 -1572 231 273 0 0 chr15 80497511 80497566 -5198188 - MLT1C LTR MaLR 0 467 413 2542 146 19 24 chr15 80497582 80497813 -5197941 + L1PA16 LINE L1 5745 5976 -190 1714 147 30 0 chr15 80497813 80498078 -5197676 + AluSg SINE Alu 5 277 -33 306 0 0 0 chr15 80498078 80498112 -5197642 + (CA)n Simple_repeat Simple_repeat 1 34 0 2542 146 19 24 chr15 80498112 80498297 -5197457 + L1PA16 LINE L1 5974 6160 -6 306 359 0 0 chr15 80499405 80499497 -5196257 - MIR SINE MIR -57 151 60 2310 59 17 0 chr15 80500261 80500551 -5195203 - AluY SINE Alu -12 299 5 1174 214 126 81 chr15 80501868 80502335 -5193419 + MLT1H LTR MaLR 62 549 0 581 99 0 11 chr15 80502702 80502793 -5192961 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 23 0 0 0 chr15 80503515 80503538 -5192216 + AT_rich Low_complexity Low_complexity 1 23 0 504 81 0 0 chr15 80505844 80505918 -5189836 + (TA)n Simple_repeat Simple_repeat 1 74 0 208 254 42 0 chr15 80506189 80506260 -5189494 + (CAGAG)n Simple_repeat Simple_repeat 2 75 0 289 217 29 0 chr15 80507870 80507939 -5187815 + AluSp/q SINE Alu 227 297 -6 1838 101 36 33 chr15 80507940 80508246 -5187508 - AluSx SINE Alu -3 309 3 242 29 29 0 chr15 80508317 80508352 -5187402 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2187 107 3 0 chr15 80509793 80510092 -5185662 - AluSg SINE Alu -10 300 1 245 231 164 19 chr15 80510940 80511044 -5184710 - L1ME4a LINE L1 -31 6090 5972 204 40 0 0 chr15 80511251 80511276 -5184478 + (TG)n Simple_repeat Simple_repeat 2 26 0 2191 123 0 0 chr15 80511405 80511697 -5184057 - AluSq SINE Alu -21 292 1 971 176 248 12 chr15 80512163 80512486 -5183268 - Charlie1a DNA MER1_type 0 1455 1057 1316 147 0 23 chr15 80512521 80512739 -5183015 - AluJb SINE Alu -13 299 87 2604 177 188 34 chr15 80512743 80513309 -5182445 - Charlie1a DNA MER1_type -1847 914 208 2027 148 0 3 chr15 80513309 80513606 -5182148 - AluJb SINE Alu -16 296 1 2604 177 188 34 chr15 80513606 80513774 -5181980 - Charlie1a DNA MER1_type -2553 208 67 26 0 0 0 chr15 80513879 80513905 -5181849 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr15 80514027 80514048 -5181706 + (A)n Simple_repeat Simple_repeat 1 21 0 1929 124 13 36 chr15 80514298 80514605 -5181149 - AluSc SINE Alu -9 300 1 1594 230 113 35 chr15 80514969 80515517 -5180237 - MLT1E LTR MaLR 0 593 3 361 193 89 112 chr15 80516419 80516613 -5179141 - L1ME4a LINE L1 -58 6063 5875 2263 86 3 32 chr15 80516613 80516927 -5178827 + AluY SINE Alu 1 305 -6 361 193 89 112 chr15 80516927 80517001 -5178753 - L1ME4a LINE L1 -246 5875 5801 271 249 117 17 chr15 80517142 80517287 -5178467 + L1P LINE L1 4388 4555 -1591 23 0 0 0 chr15 80517306 80517329 -5178425 + AT_rich Low_complexity Low_complexity 1 23 0 357 206 0 0 chr15 80517331 80517394 -5178360 + AluS SINE Alu 2 64 -239 1025 196 0 0 chr15 80517394 80517562 -5178192 + AluJb SINE Alu 132 299 -13 21 0 0 0 chr15 80517619 80517640 -5178114 + AT_rich Low_complexity Low_complexity 1 21 0 845 130 0 0 chr15 80517946 80518061 -5177693 + FLAM_C SINE Alu 1 115 -28 290 288 178 18 chr15 80518496 80518659 -5177095 + L2 LINE L2 1826 2014 -1300 324 293 61 44 chr15 80518659 80518840 -5176914 + L1MC4a LINE L1 5739 5922 -1886 198 259 139 46 chr15 80518928 80519036 -5176718 - L2 LINE L2 -9 3263 3146 213 316 128 8 chr15 80520261 80520378 -5175376 - MIR SINE MIR -51 211 81 411 317 67 23 chr15 80520987 80521321 -5174433 - L2 LINE L2 -236 3036 2692 2607 249 80 34 chr15 80521332 80522374 -5173380 - L1MC4 LINE L1 -93 7949 6860 885 138 1 0 chr15 80522381 80522548 -5173206 + MSTB LTR MaLR 1 148 -309 250 118 0 0 chr15 80522548 80522582 -5173172 + MSTB2 LTR MaLR 114 147 -310 258 114 0 0 chr15 80522582 80522617 -5173137 + MSTB2 LTR MaLR 113 147 -310 258 114 0 0 chr15 80522617 80522652 -5173102 + MSTB2 LTR MaLR 113 147 -310 258 114 0 0 chr15 80522652 80522687 -5173067 + MSTB2 LTR MaLR 113 147 -310 258 114 0 0 chr15 80522687 80522722 -5173032 + MSTB1 LTR MaLR 113 147 -310 268 127 3 0 chr15 80522722 80522793 -5172961 + MSTB1 LTR MaLR 97 148 -309 1816 180 27 6 chr15 80522793 80523121 -5172633 + MSTB1 LTR MaLR 98 432 0 237 239 141 0 chr15 80523122 80523193 -5172561 - L1MC4a LINE L1 -1038 6770 6690 1300 227 103 20 chr15 80523211 80523345 -5172409 - L1MC4a LINE L1 -1780 6028 5907 2188 115 7 0 chr15 80523345 80523649 -5172105 - AluSc SINE Alu -3 306 1 1300 227 103 20 chr15 80523649 80523923 -5171831 - L1MC4a LINE L1 -1901 5907 5586 259 301 72 46 chr15 80523936 80524490 -5171264 - L1M4 LINE L1 -3044 3102 2523 2303 121 0 3 chr15 80524490 80524804 -5170950 - AluSp SINE Alu 0 313 1 259 301 72 46 chr15 80524804 80524971 -5170783 - L1M4 LINE L1 -3623 2523 2362 665 120 51 0 chr15 80524971 80525088 -5170666 + MER53 DNA DNA 67 189 0 562 211 183 0 chr15 80525093 80525268 -5170486 + L1MC5 LINE L1 6639 6845 -1116 1139 251 35 1 chr15 80525301 80525640 -5170114 - ERVL LTR ERVL -2062 3702 3319 1405 193 0 0 chr15 80525640 80525879 -5169875 + AluJo SINE Alu 26 264 -48 3535 242 10 32 chr15 80525880 80526928 -5168826 - ERVL LTR ERVL -2540 3224 2116 1135 199 57 26 chr15 80526928 80527265 -5168489 + L1ME1 LINE L1 5697 6038 -128 771 243 79 5 chr15 80527766 80527980 -5167774 + MIR SINE MIR 12 241 -21 231 226 0 73 chr15 80528439 80528563 -5167191 + (CCCCG)n Simple_repeat Simple_repeat 5 119 0 1940 106 9 58 chr15 80530259 80530588 -5165166 - AluSq SINE Alu 0 313 1 2136 133 57 23 chr15 80531004 80531318 -5164436 - MER47A DNA MER2_type -1957 366 36 2060 134 0 0 chr15 80531318 80531649 -5164105 + AluSx SINE Alu 1 331 0 2136 133 57 23 chr15 80531649 80531687 -5164067 - MER47A DNA MER2_type -2287 36 1 2739 117 5 5 chr15 80532069 80532444 -5163310 - THE1C LTR MaLR 0 375 1 21 82 0 0 chr15 80532446 80532495 -5163259 + AT_rich Low_complexity Low_complexity 1 49 0 760 206 116 0 chr15 80533101 80533256 -5162498 + MER5A DNA MER1_type 1 173 -16 421 320 98 26 chr15 80533258 80533645 -5162109 - MLT1J LTR MaLR -96 415 1 1705 131 4 0 chr15 80534789 80535026 -5160728 - AluSp SINE Alu -75 238 1 583 269 81 85 chr15 80535231 80535677 -5160077 - MLT1J LTR MaLR 0 511 3 345 261 211 7 chr15 80535711 80535853 -5159901 - MIR SINE MIR 0 262 92 2165 129 0 3 chr15 80535956 80536258 -5159496 + AluSx SINE Alu 1 301 -11 400 252 80 33 chr15 80536328 80536479 -5159275 + L1ME4a LINE L1 5558 5715 -406 267 215 183 11 chr15 80536688 80536781 -5158973 + L1ME4a LINE L1 5975 6083 -38 1632 103 9 0 chr15 80536878 80537092 -5158662 + AluSc SINE Alu 80 295 -14 325 343 45 0 chr15 80537259 80537437 -5158317 + L1ME4a LINE L1 5607 5792 -329 319 198 74 93 chr15 80537542 80537668 -5158086 + L1ME4a LINE L1 5963 6087 -34 2720 17 0 0 chr15 80537668 80537964 -5157790 + AluYa5 SINE Alu 1 296 -15 319 198 74 93 chr15 80537964 80537999 -5157755 + L1ME4a LINE L1 6087 6121 0 1990 159 0 6 chr15 80538478 80538792 -5156962 - AluJb SINE Alu 0 312 1 22 56 0 0 chr15 80538952 80538988 -5156766 + AT_rich Low_complexity Low_complexity 1 36 0 756 345 130 11 chr15 80539322 80539861 -5155893 + L2 LINE L2 2290 2892 -422 301 202 77 58 chr15 80539964 80540068 -5155686 + L2 LINE L2 3170 3275 -38 2170 163 56 7 chr15 80541322 80541734 -5154020 - Tigger2a DNA MER2_type -2 432 1 3296 199 25 12 chr15 80542149 80542841 -5152913 - MER21B LTR ERV1 -162 701 1 582 261 165 52 chr15 80542881 80543306 -5152448 - L2 LINE L2 -4 3309 2837 1895 145 12 56 chr15 80544385 80544709 -5151045 - AluSx SINE Alu -2 310 1 4598 152 38 42 chr15 80544796 80545784 -5149970 - L1MB3 LINE L1 0 6183 5197 646 202 68 113 chr15 80546114 80546383 -5149371 - MER33 DNA MER1_type -2261 324 71 1942 118 9 84 chr15 80546383 80546706 -5149048 + AluSx SINE Alu 1 299 -13 646 202 68 113 chr15 80546706 80546772 -5148982 - MER33 DNA MER1_type -2514 71 4 2364 100 0 6 chr15 80547987 80548298 -5147456 - AluSg SINE Alu -1 309 1 2283 121 0 0 chr15 80549057 80549363 -5146391 - AluSx SINE Alu -6 306 1 1801 181 0 4 chr15 80549876 80550178 -5145576 - AluJb SINE Alu 0 307 7 1490 97 0 10 chr15 80550692 80550888 -5144866 + AluSg/x SINE Alu 98 291 -19 239 301 0 48 chr15 80550938 80551041 -5144713 + MIR3 SINE MIR 3 100 -108 2407 91 10 0 chr15 80551729 80552027 -5143727 + AluSx SINE Alu 1 301 -11 887 265 90 29 chr15 80552393 80552839 -5142915 - HAL1 LINE L1 -352 2155 1683 509 294 59 12 chr15 80552860 80553030 -5142724 + LTR33 LTR ERVL 1 178 -343 314 287 16 49 chr15 80553031 80553153 -5142601 + ERVL LTR ERVL 2440 2557 -3207 294 353 49 15 chr15 80553220 80553424 -5142330 + ERVL LTR ERVL 422 632 -5022 27 0 0 0 chr15 80554284 80554311 -5141443 + AT_rich Low_complexity Low_complexity 1 27 0 2347 83 13 3 chr15 80554314 80554616 -5141138 - AluY SINE Alu -6 305 1 285 322 37 8 chr15 80555148 80555291 -5140463 - MLT1-int LTR MaLR -847 524 399 1697 236 50 12 chr15 80555407 80555830 -5139924 - MER49 LTR ERV1 0 923 485 1238 143 28 18 chr15 80555847 80556064 -5139690 - MER72 LTR ERV1 -503 219 1 278 289 58 8 chr15 80556097 80556246 -5139508 - MLT1H1 LTR MaLR 0 555 386 2329 228 71 15 chr15 80556295 80556430 -5139324 + L1ME1 LINE L1 5472 5598 -568 2358 62 36 23 chr15 80556430 80556737 -5139017 - AluY SINE Alu 0 311 1 2349 114 0 7 chr15 80556737 80557045 -5138709 - AluSp SINE Alu -2 311 6 2329 228 71 15 chr15 80557045 80557558 -5138196 + L1ME1 LINE L1 5597 6157 -9 661 179 21 14 chr15 80557564 80557709 -5138045 - L1MB3 LINE L1 -9 6174 6029 * 816 190 11 6 chr15 80557707 80557881 -5137873 - L1MB3 LINE L1 -119 6064 5890 367 283 58 19 chr15 80557867 80558072 -5137682 - L1M4 LINE L1 -3758 2388 2176 * 1538 251 98 13 chr15 80558680 80559147 -5136607 - L1MD2 LINE L1 -239 6120 5614 2200 134 23 8 chr15 80559147 80559498 -5136256 + THE1B LTR MaLR 1 356 -8 457 191 21 0 chr15 80559499 80559593 -5136161 - L1MD2 LINE L1 -2431 5611 5516 300 313 10 0 chr15 80559654 80559750 -5136004 + ERVL LTR ERVL 4781 4877 -887 683 250 42 33 chr15 80559836 80560048 -5135706 - LTR33 LTR ERVL -28 493 280 630 231 98 40 chr15 80560351 80560576 -5135178 - LTR33 LTR ERVL -177 344 107 874 181 113 0 chr15 80560587 80560764 -5134990 - MLT2B1 LTR ERVL -7 513 317 637 250 28 48 chr15 80560764 80561012 -5134742 + L1MA9 LINE L1 5931 6173 -139 27 39 0 19 chr15 80561062 80561091 -5134663 + AT_rich Low_complexity Low_complexity 1 30 -21 2115 143 0 0 chr15 80561091 80561378 -5134376 + AluSx SINE Alu 1 287 -25 27 39 0 19 chr15 80561378 80561400 -5134354 + AT_rich Low_complexity Low_complexity 30 51 0 2445 76 0 3 chr15 80561432 80561723 -5134031 + AluY SINE Alu 1 290 -21 305 335 68 12 chr15 80561847 80562172 -5133582 + L1MC4a LINE L1 5630 5972 -1836 32 26 0 0 chr15 80562338 80562377 -5133377 + AT_rich Low_complexity Low_complexity 1 39 0 1901 181 33 60 chr15 80562838 80563318 -5132436 - MLT1C LTR MaLR 0 467 1 645 260 105 0 chr15 80563649 80563849 -5131905 + HAL1 LINE L1 1386 1606 -901 * 785 269 10 0 chr15 80563842 80564050 -5131704 - HAL1 LINE L1 -2252 255 46 299 256 66 16 chr15 80564365 80564486 -5131268 - L1MC4 LINE L1 0 8042 7916 1654 171 40 14 chr15 80564631 80564983 -5130771 - MLT1A1 LTR MaLR -4 361 1 2354 105 0 0 chr15 80565252 80565546 -5130208 - AluSx SINE Alu -14 298 5 229 244 96 52 chr15 80565916 80566051 -5129703 + L1M4 LINE L1 2624 2764 -3382 21 0 0 0 chr15 80566243 80566264 -5129490 + AT_rich Low_complexity Low_complexity 1 21 0 36 82 0 0 chr15 80566832 80566881 -5128873 + GC_rich Low_complexity Low_complexity 1 49 0 1756 146 3 21 chr15 80572979 80573266 -5122488 - AluJo SINE Alu -21 291 10 2372 177 13 0 chr15 80574108 80574583 -5121171 - L1 LINE L1 -2369 3777 3297 2040 145 3 0 chr15 80574614 80574904 -5120850 - AluSg SINE Alu -19 291 1 1968 163 0 7 chr15 80574921 80575228 -5120526 - AluJo SINE Alu -1 311 7 301 265 136 23 chr15 80575232 80575364 -5120390 - L1MD2 LINE L1 -405 5954 5808 680 286 79 4 chr15 80575394 80575635 -5120119 + L1ME LINE L1 5522 5780 -382 182 281 0 47 chr15 80575950 80576014 -5119740 - MIR SINE MIR -8 254 194 1291 166 21 29 chr15 80576015 80576291 -5119463 - AluJo SINE Alu 0 317 44 329 247 17 144 chr15 80576291 80576465 -5119289 - MIR SINE MIR -64 198 47 324 288 117 9 chr15 80577756 80577867 -5117887 - MIR SINE MIR -128 134 12 2718 32 0 0 chr15 80578465 80578773 -5116981 - AluY SINE Alu -3 308 1 1132 52 0 0 chr15 80578773 80578907 -5116847 - AluY SINE Alu -177 134 1 652 201 5 76 chr15 80605917 80606101 -5089653 + MER104 DNA Tc2 5 175 -5 401 336 57 78 chr15 80606647 80606980 -5088774 - L2 LINE L2 -2 3270 2945 21 36 0 0 chr15 80607115 80607143 -5088611 + AT_rich Low_complexity Low_complexity 1 28 0 207 242 91 0 chr15 80607429 80607495 -5088259 + MIR3 SINE MIR 134 205 -3 235 164 197 0 chr15 80607694 80607755 -5087999 + L1M4 LINE L1 2619 2691 -3455 469 210 20 0 chr15 80607805 80607905 -5087849 - U13 snRNA snRNA 0 104 3 7298 219 57 34 chr15 80607907 80609559 -5086195 + L1M4 LINE L1 2675 4488 -1658 1926 192 22 11 chr15 80609559 80609929 -5085825 + MLT1A2 LTR MaLR 1 374 0 7298 219 57 34 chr15 80609929 80610796 -5084958 + L1M4 LINE L1 4488 5333 -813 * 8194 187 140 28 chr15 80610779 80610976 -5084778 + L1MDa LINE L1 5 179 -6361 180 0 0 0 chr15 80610976 80610996 -5084758 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8194 187 140 28 chr15 80610996 80613144 -5082610 + L1MDa LINE L1 179 2613 -3927 2300 99 10 26 chr15 80613144 80613457 -5082297 + AluSg SINE Alu 1 308 -2 1050 106 0 0 chr15 80613490 80613622 -5082132 + AluSp SINE Alu 1 132 -181 2353 98 3 0 chr15 80613624 80613920 -5081834 + AluSp SINE Alu 1 297 -16 1912 183 8 43 chr15 80613920 80614318 -5081436 - MLT2B2 LTR ERVL -130 385 2 2104 86 20 3 chr15 80614318 80614619 -5081135 + L1PA10 LINE L1 5861 6166 -2 2162 111 7 26 chr15 80614619 80614926 -5080828 + AluSx SINE Alu 5 305 -7 310 333 177 19 chr15 80614958 80615131 -5080623 + L2 LINE L2 2535 2679 -635 207 0 0 0 chr15 80615131 80615154 -5080600 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 310 333 177 19 chr15 80615154 80615358 -5080396 + L2 LINE L2 2679 2972 -342 3790 177 26 36 chr15 80616456 80616587 -5079167 - MER44D DNA MER2_type -1883 604 473 2305 70 3 0 chr15 80616587 80616871 -5078883 - AluY SINE Alu 0 311 27 3790 177 26 36 chr15 80616871 80617479 -5078275 - MER44D DNA MER2_type -2014 473 1 237 178 0 0 chr15 80617893 80617938 -5077816 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 311 360 18 0 chr15 80617938 80618049 -5077705 + MIR SINE MIR 147 259 -3 194 0 39 0 chr15 80620344 80620370 -5075384 + (TG)n Simple_repeat Simple_repeat 2 28 0 2948 231 62 12 chr15 80620397 80621579 -5074175 - L1MD1 LINE L1 -196 6306 5063 6160 125 68 16 chr15 80621602 80622713 -5073041 - Tigger3b DNA MER2_type -61 1170 3 8983 116 44 10 chr15 80622727 80623527 -5072227 + Tigger1 DNA MER2_type 1 872 -1546 2179 89 0 73 chr15 80623527 80623843 -5071911 + AluSq SINE Alu 1 293 -20 8983 116 44 10 chr15 80623843 80624479 -5071275 + Tigger1 DNA MER2_type 872 1485 -933 541 269 68 45 chr15 80624496 80624849 -5070905 - L1MD1 LINE L1 -4340 2066 1706 2218 108 24 0 chr15 80624922 80625218 -5070536 - AluSg SINE Alu -7 303 1 23 33 0 0 chr15 80625999 80626029 -5069725 + AT_rich Low_complexity Low_complexity 1 30 0 261 284 0 0 chr15 80626045 80626126 -5069628 - L1MD1 LINE L1 -4691 1715 1635 1271 287 60 26 chr15 80626135 80626883 -5068871 - L1MD1 LINE L1 -4845 1561 783 349 281 138 49 chr15 80627187 80627433 -5068321 - L2 LINE L2 -626 2688 2421 376 297 82 27 chr15 80627657 80627876 -5067878 + L1M4 LINE L1 4212 4442 -1704 1325 197 76 29 chr15 80627901 80628127 -5067627 - MER7A DNA MER2_type -2709 329 84 729 82 0 0 chr15 80628127 80628225 -5067529 + L1PA5 LINE L1 6055 6152 -2 1325 197 76 29 chr15 80628225 80628313 -5067441 - MER7A DNA MER2_type -2954 84 2 22 35 0 0 chr15 80628920 80628949 -5066805 + AT_rich Low_complexity Low_complexity 1 29 0 476 170 11 0 chr15 80629297 80629391 -5066363 + L1MC5 LINE L1 7807 7901 -60 22 35 0 0 chr15 80629740 80629769 -5065985 + AT_rich Low_complexity Low_complexity 1 29 0 284 242 132 0 chr15 80630168 80630286 -5065468 + ERVL LTR ERVL 3672 3830 -1851 1206 295 84 7 chr15 80630303 80631044 -5064710 + ERVL LTR ERVL 3809 4624 -1140 418 319 56 53 chr15 80631218 80631484 -5064270 - LTR67 LTR ERVL -188 369 103 219 240 0 0 chr15 80631727 80631777 -5063977 - L2 LINE L2 -706 2608 2559 1660 214 63 39 chr15 80632276 80632329 -5063425 - L1MD2 LINE L1 -17 6342 6292 2271 99 20 0 chr15 80632329 80632623 -5063131 + AluSx SINE Alu 1 300 -12 1660 214 63 39 chr15 80632623 80633059 -5062695 - L1MD2 LINE L1 -67 6292 5841 1060 166 20 96 chr15 80633248 80633549 -5062205 - L1MD2 LINE L1 -483 5876 5599 1413 234 183 4 chr15 80634121 80634574 -5061180 - MLT1F LTR MaLR -8 534 1 2271 86 0 13 chr15 80638085 80638389 -5057365 - AluY SINE Alu -11 300 1 24 0 0 0 chr15 80639237 80639261 -5056493 + GC_rich Low_complexity Low_complexity 1 24 0 423 305 120 6 chr15 80640316 80640483 -5055271 + MIR3 SINE MIR 9 194 -14 349 257 158 70 chr15 80641049 80641163 -5054591 + MIR SINE MIR 20 142 -114 534 355 80 15 chr15 80642070 80642397 -5053357 + L1MC4a LINE L1 4903 5250 -896 609 290 128 30 chr15 80642405 80642974 -5052780 + L1MC4a LINE L1 5255 5879 -1929 545 227 0 0 chr15 80643331 80643428 -5052326 + U6 snRNA snRNA 1 97 -10 2239 87 3 0 chr15 80643447 80643745 -5052009 + AluSx SINE Alu 1 299 -13 201 195 0 0 chr15 80643747 80643788 -5051966 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 317 277 101 0 chr15 80645365 80645524 -5050230 - L1ME3 LINE L1 -218 5944 5770 244 325 0 0 chr15 80645650 80645733 -5050021 - L1M2 LINE L1 -724 5567 5485 483 282 137 26 chr15 80645747 80646279 -5049475 - L1ME3 LINE L1 -858 5288 4698 326 253 91 10 chr15 80646872 80646971 -5048783 - L1ME4a LINE L1 -11 6110 6004 1002 190 37 23 chr15 80647173 80647389 -5048365 - MER20 DNA MER1_type 0 219 1 1654 174 14 0 chr15 80647497 80647784 -5047970 + AluSx SINE Alu 1 291 -21 493 170 36 49 chr15 80647839 80647981 -5047773 - L1MD3 LINE L1 -4 7991 7640 2413 58 3 6 chr15 80648009 80648320 -5047434 - AluY SINE Alu 0 311 2 313 258 113 13 chr15 80648349 80648508 -5047246 + L1MC5 LINE L1 7745 7919 -42 195 359 54 43 chr15 80648514 80648698 -5047056 - MIR3 SINE MIR -7 201 16 1758 157 60 31 chr15 80651138 80651489 -5044265 - MLT1A1 LTR MaLR 0 365 5 226 192 77 0 chr15 80651740 80651792 -5043962 + L2 LINE L2 3255 3310 -3 246 142 45 0 chr15 80652406 80652457 -5043297 - L1MA8 LINE L1 -130 6161 6109 265 264 94 38 chr15 80652616 80652722 -5043032 + L2 LINE L2 3200 3311 -2 2205 87 0 10 chr15 80653042 80653341 -5042413 + AluSq SINE Alu 1 296 -17 889 142 69 50 chr15 80653851 80653992 -5041762 + AluJo SINE Alu 84 232 -80 3989 157 75 12 chr15 80653992 80654725 -5041029 + MER4E LTR ERV1 1 779 0 889 142 69 50 chr15 80654725 80654801 -5040953 + AluJo SINE Alu 232 305 -7 1026 189 17 0 chr15 80654802 80654982 -5040772 + L1MB7 LINE L1 5486 5668 -510 827 254 125 47 chr15 80654984 80655393 -5040361 + MER65A LTR ERV1 1 441 -4 942 185 31 15 chr15 80655416 80655611 -5040143 + L1MB7 LINE L1 5697 5894 -290 332 284 113 21 chr15 80655858 80655999 -5039755 - L2 LINE L2 0 3313 3160 392 217 56 3 chr15 80656022 80656166 -5039588 + ERVL LTR ERVL 4362 4558 -1206 1201 225 49 102 chr15 80656270 80656478 -5039276 - L1MDb LINE L1 -3050 3356 3139 1651 175 0 3 chr15 80656478 80656763 -5038991 - AluJb SINE Alu -28 284 1 1201 225 49 102 chr15 80656763 80657162 -5038592 - L1MDb LINE L1 -3267 3139 2781 2078 114 0 10 chr15 80657167 80657488 -5038266 - AluSx SINE Alu 0 312 1 1408 231 73 11 chr15 80657488 80657925 -5037829 - L1MDb LINE L1 -5101 1308 845 1067 237 82 38 chr15 80658068 80658385 -5037369 + MLT1E1 LTR MaLR 324 654 0 2346 223 53 26 chr15 80658401 80659158 -5036596 - L1MDa LINE L1 -4478 2062 1286 43307 35 22 1 chr15 80659164 80665185 -5030569 - L1PA2 LINE L1 -3 6152 3 1166 250 11 20 chr15 80665195 80665551 -5030203 - L1MDa LINE L1 -5252 1291 939 2696 104 5 11 chr15 80666076 80666452 -5029302 + THE1C LTR MaLR 1 374 -1 852 296 41 25 chr15 80666616 80666933 -5028821 - L1MDa LINE L1 -6181 359 38 333 149 30 30 chr15 80666941 80667008 -5028746 - L1MEc LINE L1 -4567 1829 1763 1507 88 65 5 chr15 80667009 80667226 -5028528 - MER30 DNA MER1_type 0 230 1 805 276 129 29 chr15 80667262 80667642 -5028112 + LTR52 LTR ERVL 1 418 -3 3972 250 58 62 chr15 80667684 80669913 -5025841 - L1MCc LINE L1 -4259 2683 13 21 0 0 0 chr15 80670203 80670224 -5025530 + AT_rich Low_complexity Low_complexity 1 21 0 812 303 95 20 chr15 80670374 80670888 -5024866 - MLT1G LTR MaLR 0 590 1 2116 111 0 10 chr15 80671439 80671746 -5024008 + AluSx SINE Alu 1 304 -8 186 43 0 0 chr15 80672830 80672853 -5022901 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 353 213 125 0 chr15 80673509 80673589 -5022165 + MIR SINE MIR 117 206 -56 207 190 0 0 chr15 80674865 80674923 -5020831 + (CA)n Simple_repeat Simple_repeat 1 58 0 241 282 91 9 chr15 80679474 80679584 -5016170 - L2 LINE L2 -1010 2304 2186 402 274 20 26 chr15 80679791 80679944 -5015810 + (CATATA)n Simple_repeat Simple_repeat 4 155 0 2048 81 39 3 chr15 80680030 80680314 -5015440 - AluSc SINE Alu -15 294 1 1621 209 43 9 chr15 80682123 80682573 -5013181 - MER63C DNA MER1_type 0 930 449 348 194 0 28 chr15 80682580 80682652 -5013102 - LTR41 LTR ERVL -6 767 698 2191 108 0 0 chr15 80682672 80682978 -5012776 + AluSg SINE Alu 1 306 -4 433 289 14 7 chr15 80683429 80683571 -5012183 - LTR41 LTR ERVL -625 148 6 2124 196 38 36 chr15 80683573 80684077 -5011677 - MLT1D LTR MaLR 0 505 1 1608 198 45 90 chr15 80684089 80684507 -5011247 - MER63C DNA MER1_type -612 448 52 432 0 0 0 chr15 80684507 80684555 -5011199 + (CA)n Simple_repeat Simple_repeat 1 48 0 1608 198 45 90 chr15 80684555 80684605 -5011149 - MER63C DNA MER1_type -1008 52 1 2063 126 0 28 chr15 80685001 80685318 -5010436 - AluSx SINE Alu -4 308 1 450 251 68 49 chr15 80685524 80685687 -5010067 - MER117 DNA MER1_type -26 171 6 21 0 0 0 chr15 80686068 80686089 -5009665 + AT_rich Low_complexity Low_complexity 1 21 0 1445 184 18 21 chr15 80686089 80686372 -5009382 - AluJo SINE Alu -30 282 1 1067 170 81 30 chr15 80686525 80686760 -5008994 - MLT1F1 LTR MaLR -8 559 313 1258 270 166 19 chr15 80686770 80687455 -5008299 - L2 LINE L2 -1150 2164 1379 256 273 47 23 chr15 80688781 80688909 -5006845 + LTR67 LTR ERVL 420 550 -7 520 196 74 14 chr15 80688949 80689097 -5006657 - MER69 DNA AcHobo 0 2526 2370 25 0 0 0 chr15 80689108 80689133 -5006621 + AT_rich Low_complexity Low_complexity 1 25 0 1048 188 53 69 chr15 80689174 80689255 -5006499 - MER69 DNA AcHobo -293 2233 2152 201 39 0 0 chr15 80689255 80689281 -5006473 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1972 123 3 3 chr15 80689281 80689566 -5006188 - AluSq SINE Alu -28 285 1 1048 188 53 69 chr15 80689566 80689746 -5006008 - MER69 DNA AcHobo -373 2153 1973 1957 96 11 4 chr15 80689746 80690078 -5005676 - AluSx SINE Alu 0 334 1 1048 188 53 69 chr15 80690078 80690133 -5005621 - MER69 DNA AcHobo -553 1973 1919 * 1211 296 78 3 chr15 80690127 80690499 -5005255 - MER69 DNA AcHobo -2090 436 37 24 32 0 0 chr15 80690534 80690565 -5005189 + AT_rich Low_complexity Low_complexity 1 31 0 4953 206 77 30 chr15 80690867 80691111 -5004643 + L1MD1 LINE L1 28 259 -6281 192 40 0 0 chr15 80691111 80691136 -5004618 + (CAA)n Simple_repeat Simple_repeat 3 27 0 4953 206 77 30 chr15 80691136 80692512 -5003242 + L1MD1 LINE L1 259 1878 -4662 3909 165 17 12 chr15 80692537 80693199 -5002555 - LTR51 LTR ERV1 0 671 7 2250 204 33 43 chr15 80693203 80693802 -5001952 + L1MD1 LINE L1 1875 2467 -4073 1112 170 0 0 chr15 80693819 80694013 -5001741 + L1PBa LINE L1 1 194 -6669 6634 97 31 1 chr15 80694013 80695117 -5000637 + L1PBa LINE L1 995 2317 -4546 872 147 0 25 chr15 80695137 80695300 -5000454 - L1 LINE L1 -2347 3799 3641 * 3186 73 41 5 chr15 80695297 80695768 -4999986 + L1PB1 LINE L1 2318 2855 -4007 11526 175 15 12 chr15 80695782 80697329 -4998425 + L1PB1 LINE L1 3565 5106 -1761 234 0 0 0 chr15 80697329 80697355 -4998399 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 11526 175 15 12 chr15 80697355 80699044 -4996710 + L1PB1 LINE L1 5106 6813 -54 2554 53 3 0 chr15 80699044 80699347 -4996407 + AluY SINE Alu 1 304 -7 11526 175 15 12 chr15 80699347 80699403 -4996351 + L1PB1 LINE L1 6813 6867 0 3714 228 33 67 chr15 80699396 80700902 -4994852 + L1MD1 LINE L1 2453 3894 -2646 * 6339 207 81 42 chr15 80700914 80702559 -4993195 - L1MC1 LINE L1 -18 6595 5015 2239 112 0 7 chr15 80702559 80702864 -4992890 - AluSq SINE Alu -10 303 1 6339 207 81 42 chr15 80702864 80703567 -4992187 - L1MC1 LINE L1 -1598 5015 4341 2081 139 0 0 chr15 80703567 80703882 -4991872 - AluSx SINE Alu 0 312 1 6339 207 81 42 chr15 80703882 80704288 -4991466 - L1MC1 LINE L1 -2272 4341 3952 2178 120 0 19 chr15 80704288 80704604 -4991150 - AluSx SINE Alu -2 310 1 6339 207 81 42 chr15 80704604 80705192 -4990562 - L1MC1 LINE L1 -2661 3952 3106 884 265 122 40 chr15 80705170 80705548 -4990206 - L1MC1 LINE L1 -5998 428 20 * 4687 233 36 40 chr15 80705548 80706964 -4988790 + L1MD1 LINE L1 3870 5281 -1259 632 171 16 39 chr15 80706964 80707093 -4988661 + FLAM_C SINE Alu 1 126 -7 4687 233 36 40 chr15 80707093 80707271 -4988483 + L1MD1 LINE L1 5281 5458 -1082 840 203 65 0 chr15 80707284 80707437 -4988317 - AluJb SINE Alu -14 298 136 5549 157 10 56 chr15 80707452 80707537 -4988217 + L1MD1 LINE L1 5474 5561 -1075 3007 75 2 0 chr15 80707537 80707935 -4987819 + L1PA8 LINE L1 5774 6172 0 5549 157 10 56 chr15 80707935 80709053 -4986701 + L1MD1 LINE L1 5561 6636 0 400 298 27 53 chr15 80709478 80709666 -4986088 - MLT1L LTR MaLR -238 377 195 279 0 0 0 chr15 80709900 80709931 -4985823 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 156 0 0 chr15 80709931 80709963 -4985791 + (CACG)n Simple_repeat Simple_repeat 3 34 0 274 341 0 0 chr15 80711481 80711563 -4984191 + MLT1K LTR MaLR 111 192 -396 247 246 45 97 chr15 80711639 80711773 -4983981 + MLT1K LTR MaLR 454 580 -8 311 199 103 103 chr15 80712052 80712198 -4983556 + MER46C DNA MER2_type 8 153 -185 198 118 0 0 chr15 80712398 80712432 -4983322 + (TC)n Simple_repeat Simple_repeat 2 35 0 223 245 20 0 chr15 80712497 80712546 -4983208 + (CA)n Simple_repeat Simple_repeat 2 51 0 2122 124 3 10 chr15 80713811 80714118 -4981636 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr15 80714299 80714321 -4981433 + AT_rich Low_complexity Low_complexity 1 22 0 470 248 110 62 chr15 80714885 80715126 -4980628 - L1MC/D LINE L1 -743 5403 5175 2168 117 21 48 chr15 80715126 80715352 -4980402 - L1MC1 LINE L1 0 6333 6119 2101 125 3 7 chr15 80715352 80715647 -4980107 - AluSx SINE Alu -18 294 1 2168 117 21 48 chr15 80715647 80715797 -4979957 - L1MC1 LINE L1 -214 6119 5967 2185 93 4 0 chr15 80715797 80716105 -4979649 - AluY SINE Alu 0 309 1 470 248 110 62 chr15 80716105 80716380 -4979374 - L1MC/D LINE L1 -970 5176 4943 434 185 199 7 chr15 80716594 80716622 -4979132 + L1MC2 LINE L1 6165 6186 -158 216 86 0 0 chr15 80716622 80716657 -4979097 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 434 185 199 7 chr15 80716657 80716779 -4978975 + L1MC2 LINE L1 6186 6344 0 1677 131 0 110 chr15 80716791 80717126 -4978628 + AluSg1 SINE Alu 1 298 -11 659 305 94 46 chr15 80717926 80718424 -4977330 - HAL1 LINE L1 -607 1900 1379 805 303 190 10 chr15 80718425 80718926 -4976828 - MLT1L LTR MaLR -2 613 23 27 0 0 0 chr15 80718940 80718967 -4976787 + AT_rich Low_complexity Low_complexity 1 27 0 284 167 14 0 chr15 80719134 80719206 -4976548 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2265 105 3 0 chr15 80719447 80719753 -4976001 - AluSx SINE Alu -5 307 1 3240 151 44 15 chr15 80720175 80720763 -4974991 + MER6A DNA MER2_type 1 605 0 1557 242 101 38 chr15 80720879 80721564 -4974190 - HAL1 LINE L1 -15 2492 1765 1102 184 95 0 chr15 80721627 80722012 -4973742 - L1MB7 LINE L1 -16 6168 5641 534 284 37 32 chr15 80721984 80722174 -4973580 - HAL1 LINE L1 -757 1750 1560 * 973 168 106 130 chr15 80723380 80723435 -4972319 - MER54B LTR ERVL 0 793 738 1537 124 53 63 chr15 80723435 80723734 -4972020 + AluJo SINE Alu 1 296 -16 973 168 106 130 chr15 80723734 80724126 -4971628 - MER54B LTR ERVL -55 738 451 677 179 0 0 chr15 80725003 80725120 -4970634 - L1PA14 LINE L1 -1 6160 6044 30 0 0 0 chr15 80725244 80725274 -4970480 + AT_rich Low_complexity Low_complexity 1 30 0 480 296 69 20 chr15 80725576 80725779 -4969975 - LTR67 LTR ERVL 0 557 345 247 288 55 0 chr15 80725909 80725982 -4969772 - LTR67 LTR ERVL -367 190 114 1224 128 0 0 chr15 80726422 80726594 -4969160 + AluSc SINE Alu 136 307 -2 2547 81 0 0 chr15 80727328 80727638 -4968116 + AluSq SINE Alu 1 310 -3 3729 186 36 0 chr15 80727710 80728429 -4967325 - L1MB5 LINE L1 -15 6159 5415 533 220 18 18 chr15 80730864 80731030 -4964724 + MIR SINE MIR 48 208 -54 603 283 84 34 chr15 80731662 80732044 -4963710 + LTR33 LTR ERVL 5 405 -116 767 276 38 31 chr15 80732075 80732489 -4963265 + L1ME4a LINE L1 5197 5600 -570 519 264 0 14 chr15 80732484 80732624 -4963130 + L1ME1 LINE L1 6024 6161 -5 * 2113 100 4 0 chr15 80733635 80733914 -4961840 - AluSq SINE Alu -18 295 16 1948 134 0 3 chr15 80735606 80735912 -4959842 + AluSq SINE Alu 1 305 0 887 116 35 85 chr15 80736302 80736455 -4959299 - MER53 DNA DNA 0 189 47 2366 79 0 13 chr15 80736455 80736758 -4958996 + AluSq SINE Alu 1 299 -14 887 116 35 85 chr15 80736758 80736803 -4958951 - MER53 DNA DNA -142 47 1 22 35 0 0 chr15 80737097 80737126 -4958628 + AT_rich Low_complexity Low_complexity 1 29 0 431 290 13 19 chr15 80737511 80737666 -4958088 + MIR SINE MIR 107 260 -2 1181 240 73 41 chr15 80737670 80738107 -4957647 + MLT1D LTR MaLR 1 451 -54 1431 129 30 0 chr15 80738118 80738320 -4957434 + AluSx SINE Alu 13 220 -92 260 301 157 0 chr15 80738451 80738617 -4957137 + L1ME4a LINE L1 5742 5933 -188 1495 271 89 32 chr15 80740306 80740391 -4955363 - L1MEc LINE L1 -2068 4061 3982 3444 87 72 58 chr15 80740391 80740976 -4954778 - MER4A LTR ERV1 -4 596 4 1495 271 89 32 chr15 80740976 80741554 -4954200 - L1MEc LINE L1 -2147 3982 3360 933 248 18 94 chr15 80741692 80742075 -4953679 + LTR16A LTR ERVL 96 449 -1 392 247 45 28 chr15 80742081 80742259 -4953495 - L1MEc LINE L1 -2923 3206 3026 1356 166 28 4 chr15 80742278 80742531 -4953223 - L1MB3 LINE L1 -28 6155 5897 1081 255 64 38 chr15 80742566 80742642 -4953112 - L1MEc LINE L1 -3142 2987 2914 2398 72 3 0 chr15 80742642 80742935 -4952819 - AluY SINE Alu -17 294 1 1081 255 64 38 chr15 80742935 80743435 -4952319 - L1MEc LINE L1 -3215 2914 2378 677 312 47 10 chr15 80743488 80744014 -4951740 - L1MEc LINE L1 -4579 1731 1153 608 313 137 38 chr15 80744016 80744460 -4951294 - L1MEc LINE L1 -5031 1088 601 1449 216 22 68 chr15 80744556 80744969 -4950785 - MSTD LTR MaLR -2 394 1 530 229 9 0 chr15 80744969 80745078 -4950676 + MER81 DNA DNA 5 114 0 285 283 19 19 chr15 80745408 80745514 -4950240 - L1MEc LINE L1 -5955 164 59 421 272 75 42 chr15 80745531 80745787 -4949967 - L1ME LINE L1 -516 5605 5357 191 355 72 0 chr15 80747946 80748098 -4947656 + MIR SINE MIR 2 164 -98 205 290 0 0 chr15 80749027 80749089 -4946665 + G-rich Low_complexity Low_complexity 4 65 0 223 339 98 38 chr15 80749480 80749716 -4946038 - L2 LINE L2 -9 3263 3014 783 152 36 7 chr15 80751035 80751173 -4944581 + FLAM_C SINE Alu 2 143 0 356 235 156 15 chr15 80752238 80752382 -4943372 - MLT1G1 LTR MaLR 0 530 384 822 262 76 30 chr15 80752424 80752741 -4943013 - MLT1G1 LTR MaLR -260 307 3 613 222 31 44 chr15 80752785 80753010 -4942744 - L1ME3 LINE L1 -3 6159 5938 582 271 125 63 chr15 80755271 80755877 -4939877 + L2 LINE L2 1353 1996 -1318 391 309 63 49 chr15 80756173 80756523 -4939231 + L2 LINE L2 2548 2902 -412 189 309 50 93 chr15 80756545 80756804 -4938950 + L2 LINE L2 3004 3251 -21 624 270 77 10 chr15 80757221 80757417 -4938337 + MIR SINE MIR 52 260 -2 30 69 0 0 chr15 80757515 80757573 -4938181 + AT_rich Low_complexity Low_complexity 1 58 0 225 65 0 0 chr15 80757845 80757876 -4937878 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 1219 194 2 0 chr15 80759007 80759231 -4936523 + L1MB3 LINE L1 5753 5939 -244 2370 90 3 10 chr15 80759231 80759543 -4936211 + AluSq SINE Alu 1 310 -3 1219 194 2 0 chr15 80759543 80759581 -4936173 + L1MB3 LINE L1 5939 5975 -208 287 215 25 0 chr15 80759582 80759661 -4936093 + GA-rich Low_complexity Low_complexity 3 83 0 1206 178 4 4 chr15 80759661 80759892 -4935862 + L1MB3 LINE L1 5953 6183 0 2231 107 0 0 chr15 80761655 80761944 -4933810 + AluSx SINE Alu 1 289 -23 207 190 0 0 chr15 80763401 80763459 -4932295 + CT-rich Low_complexity Low_complexity 2 59 0 1827 133 56 0 chr15 80764050 80764350 -4931404 + AluJo SINE Alu 1 315 0 271 337 20 0 chr15 80765021 80765119 -4930635 + MIR SINE MIR 109 208 -54 234 0 0 0 chr15 80765578 80765604 -4930150 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 461 228 22 66 chr15 80765641 80765667 -4930087 - MLT1A2 LTR MaLR -244 130 104 2363 112 0 0 chr15 80765667 80765972 -4929782 - AluSx SINE Alu -7 305 1 461 228 22 66 chr15 80765972 80766081 -4929673 - MLT1A2 LTR MaLR -270 104 1 2468 65 0 0 chr15 80766640 80766932 -4928822 - AluY SINE Alu -19 292 1 353 341 32 8 chr15 80767393 80767516 -4928238 + HAL1 LINE L1 2227 2352 -155 242 140 0 40 chr15 80767522 80767572 -4928182 - Alu SINE Alu -6 294 247 385 206 98 71 chr15 80768840 80769024 -4926730 + L1ME3A LINE L1 5972 6160 -10 240 227 45 0 chr15 80770747 80770813 -4924941 + HAL1 LINE L1 1 69 -2438 271 254 110 8 chr15 80771548 80771666 -4924088 + HAL1 LINE L1 1158 1287 -1220 436 302 168 15 chr15 80771696 80772024 -4923730 + HAL1 LINE L1 3 380 -2127 1436 252 26 43 chr15 80772030 80772609 -4923145 + L1ME1 LINE L1 2226 2794 -3352 * 3157 189 22 35 chr15 80772602 80772644 -4923110 - L1 LINE L1 -2542 3604 3563 2224 106 7 0 chr15 80772644 80772936 -4922818 - AluSx SINE Alu -1 311 18 3157 189 22 35 chr15 80772936 80773697 -4922057 - L1MA7 LINE L1 -2583 3563 2811 1865 194 5 0 chr15 80773692 80774074 -4921680 + L1MA7 LINE L1 3592 3975 -2171 * 4107 172 29 21 chr15 80774081 80774134 -4921620 + L1MA7 LINE L1 5437 5488 -803 2173 134 0 0 chr15 80774134 80774433 -4921321 + AluY SINE Alu 1 299 -12 4107 172 29 21 chr15 80774433 80775222 -4920532 + L1MA7 LINE L1 5488 6285 -6 1514 233 69 23 chr15 80775224 80775872 -4919882 + L1ME1 LINE L1 2769 3446 -2700 1554 137 140 6 chr15 80775878 80776206 -4919548 + L1MB4 LINE L1 5809 6180 0 * 1678 257 56 8 chr15 80776201 80776582 -4919172 + L1ME1 LINE L1 3447 3859 -2287 2068 147 0 25 chr15 80776582 80776902 -4918852 + AluJb SINE Alu 1 312 0 1678 257 56 8 chr15 80776902 80777022 -4918732 + L1ME1 LINE L1 3859 3972 -2174 * 4845 157 31 12 chr15 80777021 80777467 -4918287 + L1MC1 LINE L1 5398 5834 -499 1463 213 59 0 chr15 80777467 80777637 -4918117 - AluJo SINE Alu -8 304 109 315 0 0 0 chr15 80777637 80777672 -4918082 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1463 213 59 0 chr15 80777672 80777788 -4917966 - AluJo SINE Alu -203 109 1 4845 157 31 12 chr15 80777788 80778255 -4917499 + L1MC1 LINE L1 5834 6328 -5 3539 216 48 78 chr15 80778388 80779678 -4916076 + L1ME1 LINE L1 4046 5297 -849 1736 177 3 3 chr15 80779691 80780024 -4915730 - AluJo SINE Alu 0 333 1 318 50 0 0 chr15 80780085 80780125 -4915629 + (TA)n Simple_repeat Simple_repeat 2 41 0 994 233 27 8 chr15 80780142 80780184 -4915570 + L1ME1 LINE L1 5321 5361 -803 1496 132 9 18 chr15 80780184 80780411 -4915343 + AluSx SINE Alu 1 225 -87 994 233 27 8 chr15 80780411 80780630 -4915124 + L1ME1 LINE L1 5361 5587 -577 1078 229 151 92 chr15 80780650 80781152 -4914602 + MLT1E LTR MaLR 22 593 0 1732 216 17 28 chr15 80781152 80781684 -4914070 + L1ME1 LINE L1 5579 6103 -75 1608 230 62 50 chr15 80781787 80782447 -4913307 + HAL1 LINE L1 1026 1693 -814 960 280 94 16 chr15 80782466 80782955 -4912799 + HAL1 LINE L1 1981 2507 0 638 291 96 20 chr15 80782959 80783365 -4912389 + HAL1 LINE L1 1283 1719 -788 300 305 11 0 chr15 80783566 80783661 -4912093 + HAL1 LINE L1 2071 2166 -341 356 307 75 33 chr15 80783880 80784092 -4911662 + HAL1 LINE L1 2226 2446 -61 218 165 10 31 chr15 80784411 80784508 -4911246 + (TG)n Simple_repeat Simple_repeat 1 95 0 903 177 5 26 chr15 80787516 80787708 -4908046 + MER53 DNA DNA 1 188 -1 2436 44 0 69 chr15 80787809 80788128 -4907626 - AluY SINE Alu -14 297 1 536 269 139 19 chr15 80790329 80790537 -4905217 - MIR SINE MIR -21 241 9 351 308 33 0 chr15 80791571 80791691 -4904063 - MIR SINE MIR -91 171 48 308 306 44 57 chr15 80793098 80793327 -4902427 + L2 LINE L2 2741 2966 -348 232 270 55 18 chr15 80793451 80793547 -4902207 + L2 LINE L2 2977 3082 -190 1640 300 173 22 chr15 80793588 80794830 -4900924 - L2 LINE L2 -528 2786 1358 251 145 96 0 chr15 80795826 80795909 -4899845 + CT-rich Low_complexity Low_complexity 2 92 0 472 293 85 39 chr15 80796039 80796541 -4899213 + MLT1L LTR MaLR 49 609 -6 328 195 0 26 chr15 80797650 80797727 -4898027 - HsTC2 DNA Tc2 -1 1897 1823 701 75 0 0 chr15 80797835 80797928 -4897826 + AluS SINE Alu 2 94 -218 222 314 52 33 chr15 80798713 80798866 -4896888 + MIR SINE MIR 39 194 -68 366 319 115 21 chr15 80801020 80801211 -4894543 + MIR SINE MIR 46 254 -8 325 287 43 0 chr15 80801304 80801398 -4894356 + HsTC2 DNA Tc2 8 105 -1793 278 276 40 0 chr15 80801400 80801476 -4894278 - L1MEd LINE L1 -5478 641 563 27 0 0 0 chr15 80802030 80802057 -4893697 + GC_rich Low_complexity Low_complexity 1 27 0 241 226 24 0 chr15 80803334 80803418 -4892336 + (TA)n Simple_repeat Simple_repeat 2 87 0 310 309 64 52 chr15 80804925 80805050 -4890704 + L1ME3A LINE L1 4369 4491 -1655 2357 88 30 0 chr15 80805050 80805347 -4890407 + AluSp SINE Alu 1 306 -7 310 309 64 52 chr15 80805347 80805551 -4890203 + L1ME3A LINE L1 4491 4702 -1444 604 314 116 25 chr15 80805651 80806393 -4889361 + L1ME3A LINE L1 4884 5707 -457 240 306 71 22 chr15 80806430 80806613 -4889141 + L1ME3A LINE L1 5757 5948 -222 2281 100 0 22 chr15 80806614 80806933 -4888821 + AluSx SINE Alu 1 312 0 288 316 10 0 chr15 80807211 80807309 -4888445 + (TA)n Simple_repeat Simple_repeat 1 99 0 405 248 88 9 chr15 80813052 80813165 -4882589 - MIR SINE MIR -108 154 33 373 187 44 0 chr15 80813666 80813757 -4881997 - L1ME4a LINE L1 -38 6083 5989 739 199 204 0 chr15 80813814 80814010 -4881744 - MER46A DNA MER2_type 0 236 1 309 68 0 0 chr15 80814024 80814068 -4881686 + (CA)n Simple_repeat Simple_repeat 1 44 0 26 82 0 0 chr15 80814470 80814531 -4881223 + AT_rich Low_complexity Low_complexity 1 61 0 459 299 53 43 chr15 80814719 80815020 -4880734 - L1MC4a LINE L1 -1860 5948 5645 1007 241 13 9 chr15 80815046 80815270 -4880484 - MIR SINE MIR -1 261 37 329 267 58 100 chr15 80815270 80815519 -4880235 - L1MC4a LINE L1 -2170 5638 5407 1781 163 0 17 chr15 80815519 80815808 -4879946 + AluJb SINE Alu 7 290 -22 329 267 58 100 chr15 80815808 80815917 -4879837 - L1MC4a LINE L1 -2401 5407 5295 235 237 17 0 chr15 80816596 80816655 -4879099 - LTR33 LTR ERVL -437 84 25 186 405 12 0 chr15 80816784 80816868 -4878886 - L2 LINE L2 -5 3267 3183 198 0 0 0 chr15 80817376 80817398 -4878356 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1809 135 11 4 chr15 80817398 80817665 -4878089 - AluSx SINE Alu 0 312 44 644 209 16 16 chr15 80817882 80818011 -4877743 + AluJo SINE Alu 122 250 -62 1512 149 0 9 chr15 80818011 80818239 -4877515 + AluJo SINE Alu 85 310 -2 993 267 107 16 chr15 80819292 80819666 -4876088 + L1ME2 LINE L1 5747 6154 -10 207 194 0 0 chr15 80823001 80823037 -4872717 + (ATG)n Simple_repeat Simple_repeat 3 38 0 460 264 136 6 chr15 80823039 80823209 -4872545 - MIR SINE MIR -21 241 52 288 308 72 84 chr15 80823487 80823731 -4872023 - L1ME3A LINE L1 -219 5951 5711 2342 96 3 3 chr15 80823731 80824032 -4871722 + AluSx SINE Alu 1 301 -11 288 308 72 84 chr15 80824032 80824122 -4871632 - L1ME3A LINE L1 -459 5711 5621 3292 225 81 12 chr15 80824271 80825222 -4870532 - L1MB7 LINE L1 -1 6183 5174 1174 246 31 26 chr15 80825233 80825621 -4870133 - L1MCa LINE L1 -3947 2479 2130 385 304 62 57 chr15 80825767 80826185 -4869569 - ERVL LTR ERVL -3520 2244 1825 530 218 48 0 chr15 80826648 80826772 -4868982 + MER5A DNA MER1_type 25 154 -35 543 302 142 21 chr15 80827747 80828121 -4867633 - LTR33 LTR ERVL -2 519 101 334 236 0 0 chr15 80828413 80828485 -4867269 - LTR33 LTR ERVL -449 72 1 2769 306 92 26 chr15 80828495 80830739 -4865015 - L1M4 LINE L1 -1100 5046 2652 422 351 45 27 chr15 80833859 80834081 -4861673 - MIR SINE MIR -24 238 13 2151 100 21 4 chr15 80834092 80834408 -4861346 - AluSx SINE Alu 0 321 1 185 288 106 0 chr15 80834781 80834847 -4860907 + L2 LINE L2 3200 3272 0 180 0 0 0 chr15 80836131 80836151 -4859603 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2390 192 20 35 chr15 80836152 80836304 -4859450 - L1MB3 LINE L1 -10 6173 6020 366 80 0 0 chr15 80836304 80836354 -4859400 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 2220 100 0 14 chr15 80836354 80836644 -4859110 - AluSx SINE Alu -26 286 1 2390 192 20 35 chr15 80836644 80837027 -4858727 - L1MB3 LINE L1 -161 6022 5645 325 338 25 6 chr15 80837622 80837779 -4857975 + Charlie8 DNA MER1_type 25 184 -2233 264 279 252 5 chr15 80840692 80840914 -4854840 - L2 LINE L2 -5 3267 2991 185 250 25 38 chr15 80841423 80841503 -4854251 - L2 LINE L2 -217 3055 2977 448 331 0 18 chr15 80841830 80842325 -4853429 + (CATATA)n Simple_repeat Simple_repeat 5 170 0 460 343 6 11 chr15 80841874 80841906 -4853848 + (CA)n Simple_repeat Simple_repeat 1 32 -148 1736 156 58 6 chr15 80841906 80842233 -4853521 - MER2 DNA MER2_type 0 344 1 460 343 6 11 chr15 80842233 80842381 -4853373 + (CA)n Simple_repeat Simple_repeat 32 180 0 487 350 46 0 chr15 80842579 80842776 -4852978 + MIR SINE MIR 56 261 -1 305 121 138 0 chr15 80843853 80843911 -4851843 + MIR SINE MIR 83 148 -114 558 253 42 12 chr15 80844626 80844792 -4850962 - MER58B DNA MER1_type -4 337 167 1440 154 52 0 chr15 80844800 80845067 -4850687 + L1MB3 LINE L1 5639 5919 -264 278 229 194 42 chr15 80845866 80846010 -4849744 - MIR SINE MIR -16 246 81 247 296 25 12 chr15 80846119 80846200 -4849554 - MIR SINE MIR -7 255 174 433 311 40 34 chr15 80846557 80846734 -4849020 - MIR SINE MIR -74 188 11 216 287 35 52 chr15 80846789 80846904 -4848850 + L3b LINE CR1 1190 1302 -281 257 279 273 25 chr15 80848350 80848511 -4847243 - L2 LINE L2 -1 3312 3112 252 143 0 0 chr15 80848953 80848995 -4846759 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 205 350 84 30 chr15 80849772 80849975 -4845779 - L2 LINE L2 0 3272 3059 186 315 0 0 chr15 80851987 80852041 -4843713 + L2 LINE L2 2307 2360 -954 200 309 50 7 chr15 80852157 80852296 -4843458 + L2 LINE L2 2560 2704 -610 1489 203 95 14 chr15 80853111 80853470 -4842284 - MLT1B LTR MaLR -2 388 1 654 125 0 0 chr15 80855964 80856060 -4839694 - AluSg/x SINE Alu 0 312 217 237 229 100 14 chr15 80856254 80856324 -4839430 + L2 LINE L2 3232 3307 -6 337 292 108 36 chr15 80858021 80858216 -4837538 - MIR SINE MIR -36 226 18 235 356 38 0 chr15 80858241 80858401 -4837353 - L1ME4a LINE L1 0 6121 5956 222 208 0 0 chr15 80858608 80858661 -4837093 + CT-rich Low_complexity Low_complexity 2 54 0 1908 126 7 25 chr15 80858664 80858950 -4836804 - AluJb SINE Alu -17 295 15 837 221 68 47 chr15 80860304 80860539 -4835215 + MIR SINE MIR 11 250 -12 359 230 21 75 chr15 80860682 80860869 -4834885 + L1ME2 LINE L1 5752 5928 -236 * 1506 219 51 1 chr15 80860726 80861105 -4834649 + L1MB3 LINE L1 5785 6180 -3 294 288 104 61 chr15 80861748 80861911 -4833843 + MIR SINE MIR 33 202 -60 187 247 37 25 chr15 80863012 80863093 -4832661 - L2 LINE L2 -165 3107 3026 470 343 6 22 chr15 80864902 80865083 -4830671 + MIR SINE MIR 31 208 -54 333 261 232 0 chr15 80865230 80865368 -4830386 + MER5A DNA MER1_type 20 189 0 379 285 20 67 chr15 80865596 80865849 -4829905 + L1MEc LINE L1 1859 2099 -4297 576 285 79 65 chr15 80866464 80867054 -4828700 - L1ME LINE L1 -4348 1913 1333 1682 143 13 63 chr15 80867054 80867354 -4828400 - AluJo SINE Alu -17 295 11 576 285 79 65 chr15 80867354 80867743 -4828011 - L1ME LINE L1 -4928 1333 902 2256 119 0 7 chr15 80867743 80868045 -4827709 + AluSx SINE Alu 1 300 -12 576 285 79 65 chr15 80868045 80868383 -4827371 - L1ME LINE L1 -5359 902 570 2539 50 0 3 chr15 80868384 80868681 -4827073 + AluY SINE Alu 1 296 -15 436 320 67 58 chr15 80868944 80869407 -4826347 - L1ME LINE L1 -5585 485 19 1981 224 113 10 chr15 80869449 80869954 -4825800 - MLT1F1 LTR MaLR 0 567 11 2243 111 3 7 chr15 80870059 80870366 -4825388 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr15 80870603 80870626 -4825128 + AT_rich Low_complexity Low_complexity 1 23 0 1870 171 7 10 chr15 80870644 80870943 -4824811 + AluJb SINE Alu 1 298 -14 2234 112 0 13 chr15 80871099 80871402 -4824352 - AluSx SINE Alu -13 299 1 1159 291 101 52 chr15 80871676 80872494 -4823260 - L1MEc LINE L1 -1446 4769 3993 2049 130 34 0 chr15 80872494 80872786 -4822968 + AluSq SINE Alu 1 302 -11 1159 291 101 52 chr15 80872786 80873356 -4822398 - L1MEc LINE L1 -2222 3993 3453 443 143 0 24 chr15 80873356 80873440 -4822314 + L1PA16 LINE L1 6084 6165 -1 1159 291 101 52 chr15 80873440 80873953 -4821801 - L1MEc LINE L1 -2762 3453 2772 1812 75 0 4 chr15 80873962 80874202 -4821552 - THE1A LTR MaLR 0 355 117 8123 94 2 1 chr15 80874216 80875327 -4820427 - THE1A-int LTR MaLR -468 1112 1 2828 84 0 0 chr15 80875327 80875682 -4820072 - THE1A LTR MaLR 0 355 1 732 269 98 43 chr15 80875740 80876045 -4819709 + MER102b DNA MER1_type 2 323 -18 490 268 177 50 chr15 80876167 80876521 -4819233 - L1MEc LINE L1 -3640 2575 2209 282 116 0 0 chr15 80876521 80876564 -4819190 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 490 268 177 50 chr15 80876564 80876667 -4819087 - L1MEc LINE L1 -4006 2209 2120 478 248 81 0 chr15 80877038 80877199 -4818555 - HAL1 LINE L1 -822 1685 1512 731 217 11 0 chr15 80877210 80877399 -4818355 - L1MDa LINE L1 -3755 2785 2597 29 28 0 0 chr15 80877399 80877435 -4818319 + AT_rich Low_complexity Low_complexity 1 36 0 1119 170 36 9 chr15 80877464 80877688 -4818066 - L1MA4A LINE L1 0 6303 6074 2098 159 67 25 chr15 80877688 80878165 -4817589 - L1MDa LINE L1 -3928 2612 2116 364 215 0 0 chr15 80878165 80878251 -4817503 - L1MDa LINE L1 -4916 1624 1453 392 0 0 20 chr15 80878263 80878312 -4817442 + (TCC)n Simple_repeat Simple_repeat 1 48 0 993 156 0 12 chr15 80878312 80878465 -4817289 - FRAM SINE Alu -159 153 1 1656 246 109 74 chr15 80878466 80878593 -4817161 - L1MDa LINE L1 -4984 1556 1435 198 0 0 0 chr15 80878593 80878615 -4817139 + (TA)n Simple_repeat Simple_repeat 1 22 0 1656 246 109 74 chr15 80878615 80879626 -4816128 - L1MDa LINE L1 -5105 1435 378 224 365 39 0 chr15 80880438 80880542 -4815212 - MIR SINE MIR -109 153 46 1834 179 7 0 chr15 80881076 80881378 -4814376 + AluJo SINE Alu 1 304 -8 2631 37 0 0 chr15 80881706 80882003 -4813751 - AluY SINE Alu -14 297 1 1095 62 0 0 chr15 80882003 80882131 -4813623 - AluSc SINE Alu -181 128 1 200 282 36 64 chr15 80883223 80883333 -4812421 + MIR3 SINE MIR 62 168 -40 2246 215 26 17 chr15 80883409 80883949 -4811805 - MER74A LTR ERVL 0 558 14 184 223 188 62 chr15 80884061 80884173 -4811581 - MIR3 SINE MIR -78 130 5 225 163 0 0 chr15 80885061 80885110 -4810644 + (TG)n Simple_repeat Simple_repeat 2 50 0 2242 100 7 0 chr15 80885263 80885553 -4810201 + AluSx SINE Alu 1 292 -20 199 209 200 55 chr15 80886639 80886749 -4809005 - MIR3 SINE MIR -78 130 5 330 324 0 0 chr15 80887130 80887241 -4808513 + L1MB3 LINE L1 5145 5255 -891 1844 89 0 4 chr15 80887331 80887595 -4808159 + AluSx SINE Alu 48 310 0 7787 29 2 0 chr15 80887870 80889500 -4806254 - L1PA3 LINE L1 0 6155 4524 224 164 91 18 chr15 80889500 80889555 -4806199 - MIR SINE MIR -67 141 83 265 314 171 29 chr15 80889557 80889697 -4806057 - MIR SINE MIR -18 244 85 1120 135 0 24 chr15 80891116 80891286 -4804468 + FRAM SINE Alu 1 166 0 2190 103 7 0 chr15 80892104 80892421 -4803333 + AluSx SINE Alu 1 319 0 484 245 166 25 chr15 80895907 80896070 -4799684 + MER5A DNA MER1_type 4 189 0 721 179 0 8 chr15 80897031 80897165 -4798589 + FLAM_A SINE Alu 1 133 0 1924 224 68 25 chr15 80900395 80900912 -4794842 - MLT1E2 LTR MaLR -1 625 87 664 202 35 12 chr15 80901879 80902052 -4793702 - L1MB3 LINE L1 -4 6179 6003 1800 148 145 3 chr15 80902054 80902392 -4793362 - MLT1B LTR MaLR -4 386 1 1209 133 5 0 chr15 80902392 80902587 -4793167 - L1MB3 LINE L1 -174 6009 5814 2264 222 72 5 chr15 80904361 80904955 -4790799 + L1MB3 LINE L1 5540 6173 -10 497 142 136 52 chr15 80905680 80905835 -4789919 - HsTC2 DNA Tc2 0 1900 1733 363 267 41 14 chr15 80905841 80905987 -4789767 - HsTC2 DNA Tc2 -1724 174 25 2052 153 0 3 chr15 80905987 80906281 -4789473 + AluJo SINE Alu 1 293 -19 284 238 8 82 chr15 80907208 80907271 -4788483 + MER113 DNA MER1_type? 36 87 -434 735 197 0 0 chr15 80907271 80907398 -4788356 + FLAM_A SINE Alu 1 127 -6 284 238 8 82 chr15 80907398 80907456 -4788298 + MER113 DNA MER1_type? 87 148 -373 229 233 55 27 chr15 80907613 80907686 -4788068 + MIR3 SINE MIR 119 193 -15 2282 91 19 19 chr15 80907869 80908178 -4787576 - AluSq SINE Alu -4 309 1 225 0 0 0 chr15 80909917 80909942 -4785812 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2198 102 0 7 chr15 80909942 80910225 -4785529 - AluSq SINE Alu -32 281 1 25 0 0 0 chr15 80910225 80910250 -4785504 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr15 80911058 80911088 -4784666 + AT_rich Low_complexity Low_complexity 1 30 0 561 261 98 15 chr15 80913709 80913912 -4781842 - MIR SINE MIR -15 247 28 1370 253 65 5 chr15 80914678 80915046 -4780708 + MER82 DNA MER2_type 1 390 -263 1160 151 0 0 chr15 80915047 80915219 -4780535 + FRAM SINE Alu 1 171 -5 1056 217 22 52 chr15 80915219 80915259 -4780495 + MER82 DNA MER2_type 395 435 -218 2219 119 3 0 chr15 80915259 80915552 -4780202 - AluSx SINE Alu -18 294 1 1056 217 22 52 chr15 80915552 80915778 -4779976 + MER82 DNA MER2_type 435 653 0 290 329 0 0 chr15 80915813 80915889 -4779865 - MIR3 SINE MIR -8 200 125 2286 98 3 0 chr15 80916052 80916348 -4779406 + AluSx SINE Alu 1 297 -15 490 172 0 0 chr15 80919859 80919952 -4775802 - L1PB4 LINE L1 -5 6151 6059 1828 120 8 0 chr15 80920078 80920337 -4775417 - AluSg SINE Alu -10 300 40 329 113 0 0 chr15 80920490 80920543 -4775211 - AluSg SINE Alu -249 53 1 21 0 0 0 chr15 80922414 80922435 -4773319 + AT_rich Low_complexity Low_complexity 1 21 0 301 235 112 20 chr15 80922441 80922539 -4773215 + Charlie8 DNA MER1_type 116 222 -2195 219 242 80 72 chr15 80922721 80922925 -4772829 + MIR SINE MIR 3 204 -58 2171 111 31 0 chr15 80923199 80923488 -4772266 + AluSx SINE Alu 11 308 -4 3414 222 31 6 chr15 80925200 80925212 -4770542 - L1M4 LINE L1 -946 5200 5190 3753 171 12 22 chr15 80925212 80925970 -4769784 - L1MB7 LINE L1 -14 6170 5421 3414 222 31 6 chr15 80925970 80926795 -4768959 - L1M4 LINE L1 -956 5190 4342 190 270 149 14 chr15 80926840 80926914 -4768840 - L2 LINE L2 -2 3311 3228 2444 59 0 30 chr15 80927367 80927670 -4768084 + AluY SINE Alu 1 294 -17 238 267 178 25 chr15 80928186 80928388 -4767366 + L2 LINE L2 1711 1943 -1371 632 304 37 5 chr15 80928457 80928671 -4767083 + MIR SINE MIR 13 233 -29 477 287 207 31 chr15 80928675 80929049 -4766705 + L2 LINE L2 1977 2284 -1029 2398 104 0 0 chr15 80929049 80929348 -4766406 + AluY SINE Alu 1 299 -12 477 287 207 31 chr15 80929348 80929809 -4765945 + L2 LINE L2 2284 2992 -321 914 269 156 19 chr15 80930255 80930615 -4765139 - L2 LINE L2 -5 3308 2900 208 167 0 0 chr15 80930618 80930660 -4765094 - L2 LINE L2 -372 2941 2900 210 167 0 0 chr15 80930663 80930705 -4765049 - L2 LINE L2 -372 2942 2901 208 167 0 0 chr15 80930708 80930750 -4765004 - L2 LINE L2 -372 2942 2901 199 191 0 0 chr15 80930753 80930795 -4764959 - L2 LINE L2 -372 2941 2900 1380 273 128 20 chr15 80930798 80931438 -4764316 - L2 LINE L2 -372 2942 2234 333 267 48 0 chr15 80932704 80932809 -4762945 - L2 LINE L2 -20 3252 3143 2002 100 10 67 chr15 80935006 80935352 -4760402 - AluSx SINE Alu 0 329 1 323 258 35 96 chr15 80936800 80937060 -4758694 + L1MC5 LINE L1 7670 7913 -48 221 234 0 0 chr15 80937342 80937389 -4758365 + (TG)n Simple_repeat Simple_repeat 1 47 0 317 284 6 0 chr15 80937400 80937569 -4758185 + (TG)n Simple_repeat Simple_repeat 1 170 0 3097 129 27 27 chr15 80938255 80938782 -4756972 + MER1A DNA MER1_type 1 527 0 2411 66 0 3 chr15 80939304 80939593 -4756161 + AluY SINE Alu 22 309 -2 22 0 0 0 chr15 80939597 80939619 -4756135 + AT_rich Low_complexity Low_complexity 1 22 0 729 206 144 0 chr15 80939667 80939861 -4755893 - MER58A DNA MER1_type 0 224 3 4043 207 42 5 chr15 80940000 80940889 -4754865 + MER63C DNA MER1_type 9 930 0 449 291 79 12 chr15 80941360 80941525 -4754229 + L1ME LINE L1 5255 5430 -732 2331 96 17 0 chr15 80941525 80941827 -4753927 + AluSg SINE Alu 1 307 -3 223 284 74 11 chr15 80942951 80943046 -4752708 + MIR SINE MIR 90 190 -72 873 253 70 43 chr15 80945273 80945645 -4750109 - L1ME4a LINE L1 -210 5911 5530 2440 84 0 0 chr15 80945768 80946065 -4749689 + AluSx SINE Alu 6 302 -10 23 0 0 0 chr15 80946218 80946241 -4749513 + AT_rich Low_complexity Low_complexity 1 23 0 1728 149 7 15 chr15 80946812 80947081 -4748673 + AluSx SINE Alu 38 304 -8 330 211 40 0 chr15 80947147 80947223 -4748531 + LTR33 LTR ERVL 99 177 -344 1188 278 31 30 chr15 80947334 80947629 -4748125 + L1M4 LINE L1 2388 2681 -3465 2203 96 44 0 chr15 80947629 80947922 -4747832 - AluSg SINE Alu -4 306 1 1188 278 31 30 chr15 80947922 80948327 -4747427 + L1M4 LINE L1 2681 3089 -3057 418 309 140 29 chr15 80948430 80948673 -4747081 - L1MEc LINE L1 -4131 2265 1996 2557 63 0 7 chr15 80949469 80949770 -4745984 + AluY SINE Alu 3 301 -10 2407 93 7 7 chr15 80950798 80951108 -4744646 - AluSx SINE Alu -2 310 1 813 133 0 16 chr15 80951111 80951239 -4744515 - AluJo/FLAM SINE Alu -176 126 1 181 29 29 57 chr15 80952891 80952926 -4742828 + (CGG)n Simple_repeat Simple_repeat 3 36 0 1213 167 5 19 chr15 80953887 80954103 -4741651 + AluJo SINE Alu 92 304 -8 2084 99 0 4 chr15 80954127 80954399 -4741355 + AluSx SINE Alu 5 275 -37 183 80 0 0 chr15 80954402 80954427 -4741327 + (T)n Simple_repeat Simple_repeat 1 25 0 210 352 23 0 chr15 80954688 80954776 -4740978 - MER5A DNA MER1_type -66 123 34 288 324 84 14 chr15 80956848 80956990 -4738764 - MIR SINE MIR -96 166 15 378 273 109 0 chr15 80958425 80958553 -4737201 - MER58C DNA MER1_type -16 199 58 266 299 201 0 chr15 80959510 80959644 -4736110 - MIR SINE MIR -10 252 92 2112 116 30 23 chr15 80959749 80960052 -4735702 + AluSp SINE Alu 1 305 -8 468 276 15 75 chr15 80960872 80960985 -4734769 + L1M4 LINE L1 3545 3663 -2483 2349 112 0 0 chr15 80960985 80961281 -4734473 - AluSx SINE Alu -16 296 1 468 276 15 75 chr15 80961281 80961435 -4734319 + L1M4 LINE L1 3663 3796 -2350 * 1613 253 54 28 chr15 80961427 80961744 -4734010 - L1MEc LINE L1 -4211 2185 1878 2165 134 0 0 chr15 80961744 80962036 -4733718 - AluSx SINE Alu -3 309 18 1613 253 54 28 chr15 80962036 80962331 -4733423 - L1MEc LINE L1 -4518 1878 1557 2170 112 6 42 chr15 80962339 80962652 -4733102 + AluSx SINE Alu 1 302 -10 2275 86 38 7 chr15 80962664 80962955 -4732799 + AluSx SINE Alu 1 300 -12 300 183 12 12 chr15 80962981 80963063 -4732691 + HAL1 LINE L1 1069 1150 -1357 636 269 51 45 chr15 80963077 80963430 -4732324 + HAL1 LINE L1 2146 2500 -7 216 359 19 0 chr15 80963655 80963761 -4731993 + (TG)n Simple_repeat Simple_repeat 1 108 0 207 0 0 0 chr15 80963967 80963990 -4731764 + (TA)n Simple_repeat Simple_repeat 1 23 0 1769 157 7 18 chr15 80963990 80964276 -4731478 - AluJo SINE Alu -29 283 1 359 136 34 23 chr15 80964287 80964375 -4731379 - L1MB7 LINE L1 0 6184 6096 331 306 117 45 chr15 80965791 80966082 -4729672 + L1ME LINE L1 5517 5828 -293 552 292 20 20 chr15 80966087 80966289 -4729465 - L2 LINE L2 0 3313 3112 21 82 0 0 chr15 80966382 80966431 -4729323 + AT_rich Low_complexity Low_complexity 1 49 0 2152 106 27 0 chr15 80966604 80966905 -4728849 + AluY SINE Alu 1 309 -2 245 209 186 23 chr15 80967325 80967411 -4728343 + L1MC4a LINE L1 5368 5467 -2341 702 211 117 52 chr15 80967551 80967764 -4727990 - MIR SINE MIR -15 247 21 294 230 0 58 chr15 80967804 80967818 -4727936 + L1MC4a LINE L1 5704 5717 -2091 1800 192 21 0 chr15 80967818 80968157 -4727597 + MER7A DNA MER2_type 2 345 -1 294 230 0 58 chr15 80968157 80968229 -4727525 + L1MC4a LINE L1 5717 5785 -2023 335 260 137 34 chr15 80968243 80968389 -4727365 + L1MC4a LINE L1 5845 6005 -1803 1942 152 3 0 chr15 80968642 80968925 -4726829 + AluJb SINE Alu 1 284 -28 237 65 0 0 chr15 80968926 80968957 -4726797 + (CA)n Simple_repeat Simple_repeat 2 32 0 299 200 0 17 chr15 80970857 80970917 -4724837 + Tigger5 DNA MER2_type 2259 2317 -6 459 205 0 0 chr15 80970919 80970997 -4724757 - Tigger5 DNA MER2_type -2244 79 2 182 337 30 30 chr15 80973850 80973951 -4721803 - MER5A DNA MER1_type -68 121 21 289 239 148 0 chr15 80975391 80975479 -4720275 - L2 LINE L2 -2 3311 3211 2191 114 7 7 chr15 80980109 80980407 -4715347 - AluSx SINE Alu -14 298 1 260 232 40 40 chr15 80982047 80982146 -4713608 - MER5A DNA MER1_type -68 121 23 337 317 10 10 chr15 80982306 80982407 -4713347 - MIR SINE MIR -44 218 118 2879 215 88 36 chr15 80983337 80983470 -4712284 - MER21B LTR ERV1 -17 846 721 2263 109 0 0 chr15 80983470 80983782 -4711972 + AluSx SINE Alu 1 312 0 2879 215 88 36 chr15 80983782 80984441 -4711313 - MER21B LTR ERV1 -142 721 12 462 286 129 14 chr15 80984612 80984829 -4710925 - MIR SINE MIR 0 262 21 905 185 11 6 chr15 80985683 80985861 -4709893 + L1MB3 LINE L1 5977 6155 -28 601 160 24 24 chr15 80985866 80985991 -4709763 + BC200 scRNA scRNA 9 133 -67 2249 114 7 7 chr15 80986644 80986950 -4708804 + AluSx SINE Alu 1 306 -6 2066 264 112 5 chr15 80987728 80988373 -4707381 + MER45C DNA AcHobo 240 953 0 631 174 0 0 chr15 80988552 80988667 -4707087 - L1MB3 LINE L1 -2 6181 6067 728 210 20 35 chr15 80989804 80990004 -4705750 - Charlie5 DNA MER1_type 0 2624 2428 193 275 72 0 chr15 80990126 80990195 -4705559 + MIR SINE MIR 110 183 -79 183 349 48 0 chr15 80990643 80990726 -4705028 - L2 LINE L2 -1 3271 3185 1082 147 0 0 chr15 80990843 80991000 -4704754 - AluSg/x SINE Alu -22 288 132 2208 108 7 7 chr15 80991000 80991307 -4704447 - AluY SINE Alu -4 307 1 419 202 29 40 chr15 80991713 80991886 -4703868 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 412 207 35 35 chr15 80991898 80992072 -4703682 + (GGGTG)n Simple_repeat Simple_repeat 1 174 0 344 221 35 41 chr15 80992289 80992461 -4703293 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 2055 161 94 13 chr15 80992476 80992677 -4703077 - MSTB LTR MaLR -1 425 242 2130 106 3 51 chr15 80992677 80992989 -4702765 + AluSx SINE Alu 1 297 -15 2055 161 94 13 chr15 80992989 80993179 -4702575 - MSTB LTR MaLR -184 242 2 697 277 24 5 chr15 80994828 80995034 -4700720 + MLT1E2 LTR MaLR 410 619 -7 490 254 92 14 chr15 80995982 80996124 -4699630 - MER58B DNA MER1_type -6 335 183 2275 102 0 0 chr15 80998364 80998678 -4697076 - AluSq SINE Alu 0 314 1 237 246 0 43 chr15 81000622 81000691 -4695063 - MLT1K LTR MaLR 0 588 523 2462 79 7 0 chr15 81001375 81001678 -4694076 + AluSq SINE Alu 1 305 -8 342 269 97 0 chr15 81001954 81002047 -4693707 - MIR3 SINE MIR -44 164 63 620 226 8 15 chr15 81002355 81002488 -4693266 + FLAM_C SINE Alu 2 133 -10 535 14 28 0 chr15 81002494 81002566 -4693188 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1363 129 43 5 chr15 81003198 81003408 -4692346 + MER20 DNA MER1_type 2 219 0 376 265 117 46 chr15 81003670 81003866 -4691888 - L1 LINE L1 -2909 3237 3028 1937 102 0 89 chr15 81003901 81004225 -4691529 + AluSx SINE Alu 1 295 -17 1549 235 103 16 chr15 81004258 81004761 -4690993 - L1MC4 LINE L1 -156 7886 7340 2411 274 105 21 chr15 81004779 81004892 -4690862 + L1ME3A LINE L1 4085 4187 -1983 2496 90 0 0 chr15 81004892 81005202 -4690552 - AluSx SINE Alu -2 310 1 2411 274 105 21 chr15 81005202 81006914 -4688840 + L1ME3A LINE L1 4187 6092 -78 1576 269 101 36 chr15 81006956 81007137 -4688617 + L1ME3A LINE L1 4981 5149 -1021 2148 145 0 0 chr15 81007137 81007448 -4688306 + AluJb SINE Alu 1 311 -1 1576 269 101 36 chr15 81007448 81008203 -4687551 + L1ME3A LINE L1 5149 5996 -174 249 276 92 0 chr15 81008223 81008321 -4687433 + L1ME3A LINE L1 6049 6155 -15 2076 118 0 7 chr15 81009848 81010152 -4685602 - AluSp SINE Alu -11 302 1 197 241 0 37 chr15 81010611 81010665 -4685089 + MIR SINE MIR 205 256 -6 205 299 66 96 chr15 81010667 81010834 -4684920 + L2 LINE L2 3151 3312 -1 212 179 0 0 chr15 81011176 81011215 -4684539 + T-rich Low_complexity Low_complexity 1 39 0 259 259 182 0 chr15 81012296 81012466 -4683288 - L1M4 LINE L1 -907 5239 5039 894 172 176 11 chr15 81012470 81012743 -4683011 + MER33 DNA MER1_type 2 319 -5 1570 195 3 39 chr15 81012922 81013063 -4682691 + AluJb SINE Alu 1 146 -166 2427 84 3 0 chr15 81013063 81013362 -4682392 + AluSg SINE Alu 1 300 -10 1570 195 3 39 chr15 81013362 81013528 -4682226 + AluJb SINE Alu 146 297 -15 674 269 70 20 chr15 81013817 81014159 -4681595 - L1M4 LINE L1 -3574 2572 2214 2158 71 54 41 chr15 81014159 81014453 -4681301 - AluSg SINE Alu -12 298 1 2624 38 0 3 chr15 81014565 81014881 -4680873 + L1PA5 LINE L1 5838 6152 -2 2422 68 10 0 chr15 81017265 81017559 -4678195 + AluSp SINE Alu 1 297 -16 496 303 104 32 chr15 81017704 81017925 -4677829 + MIR SINE MIR 6 242 -20 204 353 15 0 chr15 81017931 81017999 -4677755 - L2 LINE L2 -24 3248 3180 2132 93 24 0 chr15 81018112 81018402 -4677352 - AluSq SINE Alu -16 297 1 2212 81 0 56 chr15 81018480 81018800 -4676954 - AluY SINE Alu -9 302 1 1030 231 130 10 chr15 81018801 81019108 -4676646 + Charlie1a DNA MER1_type 72 415 -1040 2405 187 95 31 chr15 81019150 81019737 -4676017 + Charlie1a DNA MER1_type 548 1172 -283 238 286 134 36 chr15 81020129 81020241 -4675513 + L2 LINE L2 3150 3272 0 519 191 154 0 chr15 81020802 81020938 -4674816 - AluJb SINE Alu -154 158 2 2527 66 0 0 chr15 81021188 81021491 -4674263 - AluY SINE Alu -8 303 1 370 253 115 50 chr15 81021638 81021820 -4673934 - MLT1H LTR MaLR -341 208 15 473 283 253 3 chr15 81022446 81022750 -4673004 + L2 LINE L2 1779 2158 -1156 987 229 143 9 chr15 81023472 81023787 -4671967 - MLT1A1 LTR MaLR -8 357 1 523 224 42 7 chr15 81024436 81024579 -4671175 - MLT1H LTR MaLR -382 167 20 354 258 138 12 chr15 81024801 81025104 -4670650 - LTR33 LTR ERVL -28 493 116 2328 90 6 6 chr15 81025133 81025445 -4670309 - AluSx SINE Alu 0 312 1 1221 222 63 46 chr15 81025491 81025643 -4670111 + MLT1C LTR MaLR 1 149 -318 1792 178 49 41 chr15 81025643 81026030 -4669724 - MLT1B LTR MaLR 0 390 1 1221 222 63 46 chr15 81026030 81026053 -4669701 + MLT1C LTR MaLR 149 170 -297 2057 99 0 28 chr15 81026053 81026337 -4669417 + AluSx SINE Alu 1 276 -36 1221 222 63 46 chr15 81026337 81026619 -4669135 + MLT1C LTR MaLR 170 467 0 337 147 147 0 chr15 81026875 81026950 -4668804 + LTR33 LTR ERVL 2 87 -434 555 259 116 16 chr15 81027681 81027932 -4667822 - MLT1C LTR MaLR 0 467 192 1531 164 0 16 chr15 81027938 81028188 -4667566 - AluSg/x SINE Alu -1 311 66 2062 213 97 54 chr15 81028513 81028587 -4667167 + L1ME1 LINE L1 5395 5464 -702 1900 121 28 21 chr15 81028587 81028877 -4666877 + AluSx SINE Alu 1 292 -20 2062 213 97 54 chr15 81028877 81029451 -4666303 + L1ME1 LINE L1 5464 6071 -95 3785 165 51 64 chr15 81029453 81030309 -4665445 + MER21B LTR ERV1 1 845 -18 443 139 69 30 chr15 81030331 81030432 -4665322 + L1MA10 LINE L1 6228 6332 -2 2471 85 0 0 chr15 81030437 81030744 -4665010 + AluSx SINE Alu 1 307 -5 2277 109 0 0 chr15 81031163 81031457 -4664297 + AluSg SINE Alu 2 295 -15 4961 123 70 24 chr15 81031460 81031912 -4663842 + L1MA4 LINE L1 5303 5733 -567 2342 105 0 19 chr15 81031912 81032227 -4663527 + AluSx SINE Alu 1 309 -3 4961 123 70 24 chr15 81032227 81032723 -4663031 + L1MA4 LINE L1 5733 6294 -6 184 253 80 53 chr15 81033111 81033186 -4662568 + L3 LINE CR1 1409 1485 -92 222 274 0 0 chr15 81033281 81033332 -4662422 - MER5A DNA MER1_type -2 187 137 1268 177 131 8 chr15 81033778 81034038 -4661716 + AluJb SINE Alu 1 292 -20 2229 108 3 0 chr15 81034042 81034337 -4661417 + AluSq SINE Alu 1 296 -17 2192 117 3 0 chr15 81034338 81034629 -4661125 + AluSc SINE Alu 1 292 -17 313 284 12 12 chr15 81034638 81034719 -4661035 - L1MCa LINE L1 -4362 2064 1984 726 276 58 12 chr15 81034885 81035128 -4660626 - L1MC4a LINE L1 -1960 5848 5595 480 175 0 0 chr15 81035140 81035220 -4660534 + AluJ/FRAM SINE Alu 223 302 -10 306 0 0 0 chr15 81036071 81036105 -4659649 + (CA)n Simple_repeat Simple_repeat 1 34 0 2418 62 3 16 chr15 81038040 81038346 -4657408 - AluSp SINE Alu -11 302 1 28 29 0 0 chr15 81039496 81039531 -4656223 + GC_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr15 81039727 81039774 -4655980 + GC_rich Low_complexity Low_complexity 1 47 0 214 200 27 36 chr15 81040228 81040338 -4655416 + (CGG)n Simple_repeat Simple_repeat 2 110 0 203 212 42 36 chr15 81040309 81040474 -4655280 + (CGCGG)n Simple_repeat Simple_repeat 2 167 0 * 21 57 0 0 chr15 81040622 81040657 -4655097 + GC_rich Low_complexity Low_complexity 1 35 0 2471 79 0 3 chr15 81042094 81042398 -4653356 + AluSx SINE Alu 1 303 -9 2279 86 0 52 chr15 81042806 81043131 -4652623 + AluY SINE Alu 1 308 -3 187 188 176 71 chr15 81043934 81044019 -4651735 - MIR3 SINE MIR -6 202 109 381 321 185 3 chr15 81044463 81044806 -4650948 - L2 LINE L2 -167 3146 2737 268 292 90 41 chr15 81045128 81045395 -4650359 - L1M4 LINE L1 -1191 4955 4676 501 273 157 24 chr15 81047000 81047293 -4648461 + L1ME4a LINE L1 5779 6110 -11 1249 196 141 13 chr15 81049696 81050002 -4645752 - MER2 DNA MER2_type 0 345 1 264 284 124 32 chr15 81050371 81050441 -4645313 - L1ME4a LINE L1 -1 6120 6058 2187 100 17 0 chr15 81050441 81050732 -4645022 + AluSg SINE Alu 1 296 -14 264 284 124 32 chr15 81050732 81050911 -4644843 - L1ME4a LINE L1 -63 6058 5848 826 116 78 0 chr15 81051011 81051140 -4644614 - MER85 DNA T2_type 0 139 1 352 181 369 6 chr15 81052249 81052409 -4643345 - MIR SINE MIR -25 237 20 484 200 59 37 chr15 81053198 81053333 -4642421 + MER104 DNA Tc2 38 175 -5 800 112 72 46 chr15 81053540 81053692 -4642062 + L1MB3 LINE L1 6028 6183 0 25 51 0 0 chr15 81053974 81054013 -4641741 + AT_rich Low_complexity Low_complexity 1 39 0 2411 84 0 19 chr15 81054581 81054892 -4640862 - AluSg SINE Alu -5 305 1 1779 133 40 130 chr15 81054903 81054998 -4640756 - THE1B LTR MaLR 0 364 262 2284 79 0 14 chr15 81054998 81055290 -4640464 - AluY SINE Alu -23 288 1 1779 133 40 130 chr15 81055290 81055594 -4640160 - THE1B LTR MaLR -102 262 1 233 310 138 0 chr15 81055770 81055886 -4639868 + L2 LINE L2 3136 3267 -5 2202 93 0 0 chr15 81056966 81057245 -4638509 - AluSg SINE Alu -31 279 1 346 275 60 28 chr15 81059115 81059333 -4636421 - L1M4 LINE L1 -918 5228 5004 299 301 39 10 chr15 81060091 81060194 -4635560 - L1ME3A LINE L1 0 6170 6065 539 181 38 0 chr15 81061281 81061386 -4634368 - L1MA6 LINE L1 -10 6290 6182 272 81 0 0 chr15 81061387 81061424 -4634330 + L1MA6 LINE L1 6138 6174 -126 436 95 189 0 chr15 81061605 81061679 -4634075 + AluS SINE Alu 2 89 -223 3156 214 185 34 chr15 81061779 81063291 -4632463 - L1M4c LINE L1 -3621 3023 1299 3946 202 66 62 chr15 81063317 81064438 -4631316 - L1M4c LINE L1 -5416 1126 1 236 257 64 37 chr15 81064597 81064706 -4631048 - L2 LINE L2 0 3313 3202 462 287 14 21 chr15 81064909 81065052 -4630702 + MIR SINE MIR 62 203 -59 2169 142 101 0 chr15 81065574 81065962 -4629792 - MSTA LTR MaLR -1 427 1 1350 175 47 0 chr15 81066032 81066266 -4629488 + AluJb SINE Alu 9 253 -59 238 341 0 12 chr15 81066786 81066868 -4628886 + MER5A DNA MER1_type 105 185 -4 1996 173 18 0 chr15 81067147 81067489 -4628265 - MER7A DNA MER2_type 0 346 1 2102 98 21 3 chr15 81068091 81068376 -4627378 + AluSq SINE Alu 1 290 -23 424 151 43 115 chr15 81068403 81068542 -4627212 + MLT1F1 LTR MaLR 1 129 -438 2083 233 36 4 chr15 81068549 81069047 -4626707 + L1MD3 LINE L1 7471 7984 -11 1497 162 68 4 chr15 81069905 81070170 -4625584 - AluSx SINE Alu -30 282 1 226 276 162 60 chr15 81070187 81070917 -4624837 - L2 LINE L2 -15 3298 2507 421 207 197 21 chr15 81070995 81071183 -4624571 - L2 LINE L2 -1050 2264 2044 2041 109 46 0 chr15 81071328 81071612 -4624142 + AluSp SINE Alu 1 297 -16 185 366 24 12 chr15 81072309 81072391 -4623363 - MIR SINE MIR -163 99 17 559 175 183 0 chr15 81072618 81072755 -4622999 - FRAM SINE Alu -21 155 1 1834 77 4 73 chr15 81072794 81073068 -4622686 - AluSx SINE Alu -57 255 1 10732 162 63 24 chr15 81073104 81075206 -4620548 - L1MC3 LINE L1 -176 7609 5427 2058 133 0 0 chr15 81075646 81075931 -4619823 - AluSx SINE Alu -27 285 1 2131 129 21 12 chr15 81076168 81076508 -4619246 - MSTA LTR MaLR -11 417 75 281 116 0 0 chr15 81076507 81076550 -4619204 - MSTA LTR MaLR -310 118 76 * 285 114 0 0 chr15 81076550 81076594 -4619160 - MSTA LTR MaLR -310 118 75 285 114 0 0 chr15 81076593 81076637 -4619117 - MSTA LTR MaLR -310 118 75 285 114 0 0 chr15 81076636 81076680 -4619074 - MSTA LTR MaLR -310 118 75 285 114 0 0 chr15 81076679 81076723 -4619031 - MSTA LTR MaLR -310 118 75 * 661 157 26 0 chr15 81076722 81076837 -4618917 - MSTA LTR MaLR -310 118 1 23 54 0 0 chr15 81078381 81078418 -4617336 + AT_rich Low_complexity Low_complexity 1 37 0 2666 218 100 22 chr15 81078630 81079393 -4616361 - L1ME2 LINE L1 -21 6126 5305 491 267 61 93 chr15 81079444 81080046 -4615708 - L1ME2 LINE L1 -4752 1558 959 2190 118 0 0 chr15 81080046 81080342 -4615412 - AluSx SINE Alu -16 296 1 491 267 61 93 chr15 81080342 81080498 -4615256 - L1ME2 LINE L1 -5351 959 800 2910 234 82 39 chr15 81082004 81082655 -4613099 - L1MC4 LINE L1 -262 7627 6829 2290 108 0 0 chr15 81082655 81082952 -4612802 - AluSx SINE Alu -15 297 1 2910 234 82 39 chr15 81082952 81083348 -4612406 - L1MC4 LINE L1 -1060 6829 6452 223 143 20 20 chr15 81084307 81084356 -4611398 + T-rich Low_complexity Low_complexity 3 51 0 2460 64 0 3 chr15 81085415 81085713 -4610041 - AluY SINE Alu -14 297 1 1847 170 0 3 chr15 81086478 81086761 -4608993 - AluSx SINE Alu -30 282 1 2519 195 145 52 chr15 81086798 81086911 -4608843 - L1MC4 LINE L1 0 8042 7941 2226 98 0 3 chr15 81086911 81087235 -4608519 - AluSq SINE Alu 0 323 1 2519 195 145 52 chr15 81087235 81087926 -4607828 - L1MC4 LINE L1 -101 7941 7162 183 292 0 0 chr15 81091318 81091366 -4604388 + L2 LINE L2 3261 3308 -5 299 179 90 0 chr15 81091777 81091844 -4603910 - L1MB2 LINE L1 -54 6117 6045 2263 81 0 7 chr15 81091853 81092164 -4603590 - AluSc SINE Alu 0 309 1 626 241 97 39 chr15 81092461 81092668 -4603086 - MER58A DNA MER1_type -5 219 1 22 80 0 0 chr15 81093741 81093791 -4601963 + AT_rich Low_complexity Low_complexity 1 50 0 620 135 0 0 chr15 81094191 81094280 -4601474 - FLAM_A SINE Alu -53 89 1 669 220 0 0 chr15 81094709 81094827 -4600927 - FLAM_C SINE Alu -15 118 1 228 274 113 9 chr15 81095040 81095146 -4600608 + L1ME4a LINE L1 5984 6100 -21 1820 139 68 0 chr15 81095322 81095602 -4600152 - AluSx SINE Alu -13 299 1 31 0 0 0 chr15 81095612 81095643 -4600111 + AT_rich Low_complexity Low_complexity 1 31 0 2307 93 7 13 chr15 81095728 81096029 -4599725 - AluY SINE Alu -12 299 1 24 53 0 0 chr15 81096422 81096460 -4599294 + AT_rich Low_complexity Low_complexity 1 38 0 191 324 82 0 chr15 81098189 81098359 -4597395 + L2 LINE L2 2991 3174 -139 200 280 0 0 chr15 81099333 81099383 -4596371 - L2 LINE L2 0 3313 3264 5518 172 55 12 chr15 81099810 81101204 -4594550 - L1MC1 LINE L1 -2 6331 4873 239 241 172 11 chr15 81101994 81102081 -4593673 + Charlie8 DNA MER1_type 85 185 -2232 243 0 0 0 chr15 81104055 81104082 -4591672 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2195 108 3 0 chr15 81104084 81104371 -4591383 - AluSx SINE Alu -24 288 1 1981 158 6 6 chr15 81104736 81105047 -4590707 - AluJb SINE Alu -1 311 1 259 261 0 15 chr15 81105051 81105116 -4590638 - MIR SINE MIR -120 142 79 1363 143 0 45 chr15 81105214 81105472 -4590282 - AluJb SINE Alu 0 317 70 198 0 0 0 chr15 81105847 81105869 -4589885 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr15 81106723 81106748 -4589006 + AT_rich Low_complexity Low_complexity 1 25 0 1525 158 120 11 chr15 81106919 81107185 -4588569 + AluSg SINE Alu 1 295 -15 902 227 88 19 chr15 81107924 81108232 -4587522 - HAL1 LINE L1 -740 1767 1439 546 284 124 34 chr15 81108392 81108949 -4586805 - HAL1 LINE L1 -1321 1186 580 2235 182 17 2 chr15 81109082 81109489 -4586265 + Tigger2 DNA MER2_type 337 749 -1969 1496 133 28 16 chr15 81109548 81109803 -4585951 + Tigger2 DNA MER2_type 2461 2718 0 22 56 0 0 chr15 81114205 81114241 -4581513 + AT_rich Low_complexity Low_complexity 1 36 0 1598 136 0 8 chr15 81114743 81114978 -4580776 - AluSg/x SINE Alu 0 312 80 1366 143 0 22 chr15 81119705 81119928 -4575826 - AluSx SINE Alu 0 312 95 850 144 0 0 chr15 81119943 81120061 -4575693 - AluSx SINE Alu -195 118 1 518 258 180 0 chr15 81122757 81122935 -4572819 - MER63A DNA MER1_type 0 210 1 316 186 137 69 chr15 81122987 81123089 -4572665 + MIR SINE MIR 79 187 -75 580 281 94 22 chr15 81124037 81124261 -4571493 - MIR SINE MIR 0 262 23 979 272 40 87 chr15 81124502 81125054 -4570700 + L1ME LINE L1 883 1408 -5539 282 271 24 7 chr15 81125206 81125308 -4570446 + L1ME LINE L1 1399 1499 -5448 388 277 7 7 chr15 81125469 81125606 -4570148 + L1ME LINE L1 1388 1524 -5335 1656 118 5 0 chr15 81125606 81125827 -4569927 - AluSq SINE Alu -91 222 1 832 171 0 0 chr15 81125841 81125964 -4569790 - FLAM_C SINE Alu -20 123 1 479 259 190 15 chr15 81126086 81126360 -4569394 + L1ME4a LINE L1 5790 6111 -10 2383 66 38 0 chr15 81126475 81126764 -4568990 + AluY SINE Alu 1 300 -11 1780 148 81 65 chr15 81126811 81127078 -4568676 - MLT1C LTR MaLR -13 454 176 4995 92 10 1 chr15 81127078 81127763 -4567991 - LTR8 LTR ERV1 0 691 1 1780 148 81 65 chr15 81127763 81127942 -4567812 - MLT1C LTR MaLR -291 176 1 230 301 63 42 chr15 81129136 81129279 -4566475 + MER5B DNA MER1_type 3 148 -30 489 121 0 0 chr15 81129304 81129387 -4566367 - L1MB3 LINE L1 0 6183 6101 1152 253 14 36 chr15 81129400 81129763 -4565991 + MLT1A2 LTR MaLR 20 374 0 3379 155 126 34 chr15 81129769 81130157 -4565597 - L1MB2 LINE L1 -86 6085 5734 2109 132 23 3 chr15 81130157 81130461 -4565293 - AluSx SINE Alu -2 310 1 3379 155 126 34 chr15 81130461 81130808 -4564946 - L1MB2 LINE L1 -437 5734 5282 808 221 62 152 chr15 81131039 81131599 -4564155 + MLT1K LTR MaLR 79 588 0 240 270 14 14 chr15 81133002 81133076 -4562678 - MIR SINE MIR -15 247 174 244 163 82 0 chr15 81133327 81133376 -4562378 + MIR SINE MIR 91 143 -65 185 289 84 0 chr15 81133755 81133838 -4561916 - L2 LINE L2 -50 3222 3133 2481 90 0 0 chr15 81134149 81134460 -4561294 + AluY SINE Alu 1 311 0 2209 118 0 3 chr15 81135587 81135891 -4559863 - AluSg SINE Alu -7 303 1 1219 257 56 15 chr15 81135906 81136315 -4559439 + L1MB3 LINE L1 5758 6183 0 2193 108 7 0 chr15 81136350 81136645 -4559109 + AluSx SINE Alu 1 297 -15 475 329 2 2 chr15 81137268 81137733 -4558021 + (TG)n Simple_repeat Simple_repeat 1 464 0 240 0 49 24 chr15 81138168 81138209 -4557545 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 780 279 76 54 chr15 81138213 81138622 -4557132 - MLT1J1 LTR MaLR 0 446 29 311 219 175 9 chr15 81138626 81138740 -4557014 + MER94 DNA DNA 1 133 -1 304 262 47 0 chr15 81138941 81139048 -4556706 - L1MC/D LINE L1 -2024 5784 5673 2410 94 7 0 chr15 81139075 81139383 -4556371 + AluSx SINE Alu 1 310 -2 200 0 48 48 chr15 81140046 81140088 -4555666 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 705 291 76 54 chr15 81140092 81140501 -4555253 - MLT1J1 LTR MaLR 0 446 29 227 236 0 18 chr15 81140505 81140560 -4555194 + MER94 DNA DNA 1 54 -80 241 116 0 23 chr15 81140911 81140954 -4554800 - Alu SINE Alu -105 61 20 372 295 97 1 chr15 81141277 81141519 -4554235 - L1MC/D LINE L1 -728 5442 5175 834 178 7 0 chr15 81141547 81141682 -4554072 - AluSq/x SINE Alu -176 136 1 201 195 0 0 chr15 81142251 81142292 -4553462 + (ATG)n Simple_repeat Simple_repeat 1 41 0 204 150 0 25 chr15 81142474 81142514 -4553240 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 283 259 54 18 chr15 81142867 81142979 -4552775 - L1ME LINE L1 -458 5663 5548 660 203 0 0 chr15 81143004 81143122 -4552632 - FLAM_C SINE Alu -24 119 2 724 218 13 19 chr15 81144282 81144438 -4551316 - MIR SINE MIR -79 183 29 267 323 75 50 chr15 81144530 81144613 -4551141 + MIR SINE MIR 28 107 -155 1814 155 14 7 chr15 81144613 81144897 -4550857 - AluJo SINE Alu -26 286 1 267 323 75 50 chr15 81144897 81144974 -4550780 + MIR SINE MIR 107 192 -70 2275 109 6 6 chr15 81145607 81145919 -4549835 + AluSx SINE Alu 1 312 0 352 269 98 101 chr15 81146190 81146506 -4549248 - MLT1J LTR MaLR -196 315 1 21 0 0 0 chr15 81147092 81147113 -4548641 + AT_rich Low_complexity Low_complexity 1 21 0 579 290 6 23 chr15 81147198 81147374 -4548380 - LTR67 LTR ERVL -366 191 19 1213 145 57 5 chr15 81147386 81147579 -4548175 + AluJb SINE Alu 3 205 -107 833 301 70 39 chr15 81147739 81148181 -4547573 + L2 LINE L2 2216 2671 -643 270 287 0 11 chr15 81148298 81148385 -4547369 + L2 LINE L2 3155 3240 -73 918 185 7 0 chr15 81148428 81148574 -4547180 + FRAM SINE Alu 1 146 -30 2283 111 3 3 chr15 81148589 81148895 -4546859 + AluSx SINE Alu 1 306 -6 249 222 0 0 chr15 81150188 81150251 -4545503 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 549 253 0 0 chr15 81150254 81150432 -4545322 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 219 239 0 0 chr15 81150433 81150479 -4545275 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 283 350 0 17 chr15 81150582 81150702 -4545052 + (CGGG)n Simple_repeat Simple_repeat 3 120 0 * 379 349 8 0 chr15 81150627 81150759 -4544995 + (TGGA)n Simple_repeat Simple_repeat 2 134 0 180 219 0 0 chr15 81150766 81150807 -4544947 + (TGGG)n Simple_repeat Simple_repeat 3 43 0 883 250 9 28 chr15 81151148 81151360 -4544394 + MER3 DNA MER1_type 2 209 0 590 273 99 48 chr15 81151575 81151909 -4543845 + MLT1J LTR MaLR 7 357 -154 198 103 0 0 chr15 81152785 81152814 -4542940 + (CA)n Simple_repeat Simple_repeat 1 29 0 590 238 88 0 chr15 81153642 81153835 -4541919 + L1MC4 LINE L1 6709 6918 -1124 264 319 86 29 chr15 81154020 81154230 -4541524 + L1MC4 LINE L1 7098 7319 -723 215 226 39 0 chr15 81154815 81154917 -4540837 + (CA)n Simple_repeat Simple_repeat 1 106 0 256 325 12 0 chr15 81155421 81155501 -4540253 - MIR SINE MIR -105 157 77 249 277 24 0 chr15 81156208 81156291 -4539463 - MIR SINE MIR -1 261 177 1875 199 42 9 chr15 81156297 81156634 -4539120 + MER7A DNA MER2_type 1 346 0 629 271 0 22 chr15 81156936 81157117 -4538637 + L1ME1 LINE L1 5296 5472 -694 1912 107 4 0 chr15 81157117 81157379 -4538375 + AluSx SINE Alu 1 263 -49 22 0 0 0 chr15 81157461 81157483 -4538271 + AT_rich Low_complexity Low_complexity 1 22 0 2990 196 68 5 chr15 81157483 81158143 -4537611 + L1ME1 LINE L1 5460 6161 -5 21 0 0 0 chr15 81160468 81160489 -4535265 + AT_rich Low_complexity Low_complexity 1 21 0 280 318 62 17 chr15 81160635 81160814 -4534940 - L1MC4a LINE L1 -1830 5978 5792 1038 154 10 53 chr15 81160924 81160967 -4534787 - L1MB3 LINE L1 -4 6179 6136 2431 113 132 5 chr15 81160967 81161346 -4534408 - MSTA LTR MaLR -1 427 1 1038 154 10 53 chr15 81161346 81161510 -4534244 - L1MB3 LINE L1 -47 6136 5981 314 183 24 49 chr15 81161513 81161595 -4534159 - L1MB3 LINE L1 -123 6060 5981 287 202 22 45 chr15 81161591 81161680 -4534074 - L1MB3 LINE L1 -116 6067 5981 * 292 214 22 45 chr15 81161676 81161765 -4533989 - L1MB3 LINE L1 -116 6067 5981 283 214 22 45 chr15 81161761 81161850 -4533904 - L1MB3 LINE L1 -116 6067 5981 * 287 202 22 45 chr15 81161846 81161935 -4533819 - L1MB3 LINE L1 -116 6067 5981 * 3571 179 53 15 chr15 81161931 81162775 -4532979 - L1MB3 LINE L1 -116 6067 5193 1397 215 29 63 chr15 81162814 81163025 -4532729 - MLT1A2 LTR MaLR -5 369 175 2194 97 17 0 chr15 81163025 81163315 -4532439 - AluSc SINE Alu -13 296 2 1397 215 29 63 chr15 81163315 81163485 -4532269 - MLT1A2 LTR MaLR -199 175 1 554 251 28 104 chr15 81164291 81164502 -4531252 + MER63A DNA MER1_type 12 206 -4 310 248 80 0 chr15 81164773 81164886 -4530868 + LTR67 LTR ERVL 433 554 -3 314 261 123 14 chr15 81165713 81165851 -4529903 + MIR SINE MIR 59 211 -51 1809 222 120 48 chr15 81165867 81166416 -4529338 + MER97a DNA MER1_type? 14 623 -271 2114 85 0 17 chr15 81166416 81166710 -4529044 + AluSg SINE Alu 1 289 -21 1809 222 120 48 chr15 81166710 81166844 -4528910 + MER97a DNA MER1_type? 623 746 -148 2861 190 85 28 chr15 81166952 81167519 -4528235 - L1MB8 LINE L1 -140 6038 5505 1929 147 0 13 chr15 81167519 81167832 -4527922 - AluSx SINE Alu -3 309 1 2861 190 85 28 chr15 81167832 81168374 -4527380 - L1MB8 LINE L1 -673 5505 4815 713 246 100 30 chr15 81168496 81168784 -4526970 - MLT1H LTR MaLR -230 319 11 362 342 73 8 chr15 81168846 81169080 -4526674 - L2 LINE L2 -246 3067 2819 321 175 18 9 chr15 81170127 81170241 -4525513 + CT-rich Low_complexity Low_complexity 1 115 0 229 224 35 0 chr15 81171785 81171843 -4523911 - MIR SINE MIR -117 145 86 2157 110 0 19 chr15 81172209 81172527 -4523227 + AluSx SINE Alu 1 312 0 2198 101 0 22 chr15 81172538 81172856 -4522898 + AluSx SINE Alu 1 311 -1 1609 153 26 99 chr15 81173898 81174283 -4521471 + MLT1A1 LTR MaLR 9 365 0 269 50 0 25 chr15 81174349 81174389 -4521365 + (TA)n Simple_repeat Simple_repeat 1 39 0 688 191 44 0 chr15 81174402 81174538 -4521216 - MLT1A1 LTR MaLR -215 150 9 2113 113 0 0 chr15 81174567 81174859 -4520895 - AluSx SINE Alu -20 292 1 274 246 29 0 chr15 81175632 81175701 -4520053 + MLT1K LTR MaLR 454 524 -64 216 152 20 19 chr15 81176900 81176952 -4518802 + MIR SINE MIR 93 147 -63 1646 156 45 7 chr15 81177153 81177441 -4518313 + AluJo SINE Alu 1 299 -13 192 171 0 49 chr15 81178871 81178912 -4516842 - MIR SINE MIR -113 149 111 372 276 110 7 chr15 81178997 81179142 -4516612 - MIR SINE MIR -7 255 96 449 287 38 0 chr15 81179243 81179400 -4516354 - MER5B DNA MER1_type -13 165 3 323 352 62 28 chr15 81179737 81179913 -4515841 + L2 LINE L2 3132 3313 0 206 293 142 0 chr15 81180544 81180650 -4515104 + MER5B DNA MER1_type 5 125 -53 2075 169 41 41 chr15 81181889 81182308 -4513446 - MSTB LTR MaLR 0 426 8 820 216 0 17 chr15 81182391 81182567 -4513187 - AluJb SINE Alu -13 299 127 350 260 10 10 chr15 81183025 81183125 -4512629 - MLT1K LTR MaLR -9 579 480 1579 178 34 34 chr15 81183291 81183640 -4512114 - MLT1A1 LTR MaLR -16 349 1 1959 166 5 49 chr15 81183645 81184031 -4511723 - MLT1B LTR MaLR -21 369 1 616 263 46 48 chr15 81184190 81184459 -4511295 + MLT1D LTR MaLR 9 281 -186 270 254 0 0 chr15 81184551 81184610 -4511144 + MLT1D LTR MaLR 447 505 0 192 170 0 0 chr15 81184933 81184986 -4510768 + CT-rich Low_complexity Low_complexity 1 53 0 * 228 137 0 0 chr15 81184985 81185036 -4510718 + (CA)n Simple_repeat Simple_repeat 1 51 0 238 211 0 53 chr15 81185036 81185077 -4510677 + CT-rich Low_complexity Low_complexity 1 38 -34 2154 73 70 0 chr15 81185077 81185364 -4510390 - AluY SINE Alu -4 307 1 238 211 0 53 chr15 81185364 81185398 -4510356 + CT-rich Low_complexity Low_complexity 38 72 0 1511 194 0 3 chr15 81186641 81186924 -4508830 + AluJo SINE Alu 1 282 -30 257 337 10 10 chr15 81188090 81188191 -4507563 - L2 LINE L2 -21 3292 3192 2173 122 0 0 chr15 81188414 81188718 -4507036 - AluSx SINE Alu -8 304 1 181 281 53 0 chr15 81188723 81188780 -4506974 - L2 LINE L2 -472 2842 2783 1096 249 161 8 chr15 81188794 81189184 -4506570 + MER90 LTR ERV1 1 450 -164 816 173 42 104 chr15 81189702 81189980 -4505774 - LTR12 LTR ERV1 -427 1800 55 242 269 0 0 chr15 81189996 81190048 -4505706 - LTR30 LTR ERV1 -670 52 1 207 333 32 0 chr15 81191251 81191314 -4504440 + MIR SINE MIR 80 144 -118 2403 62 3 0 chr15 81191617 81191921 -4503833 - AluY SINE Alu -4 307 3 354 324 146 19 chr15 81191974 81192187 -4503567 - MIR SINE MIR -3 259 20 3838 168 23 48 chr15 81192621 81193074 -4502680 - L1MB3 LINE L1 -1 6182 5754 2183 104 0 0 chr15 81193074 81193371 -4502383 - AluSg SINE Alu 0 310 14 3838 168 23 48 chr15 81193371 81193691 -4502063 - L1MB3 LINE L1 -429 5754 5428 2085 121 3 6 chr15 81193761 81194074 -4501680 - AluSx SINE Alu 0 312 1 1305 159 13 9 chr15 81194083 81194310 -4501444 - L1MA5 LINE L1 -2 6298 6071 3529 123 2 4 chr15 81194310 81194837 -4500917 + MER1A DNA MER1_type 4 529 0 620 289 5 5 chr15 81194837 81195031 -4500723 - L1MA5 LINE L1 -220 6080 5887 755 200 32 5 chr15 81196292 81196477 -4499277 - L1MA6 LINE L1 -276 6024 5835 304 328 0 33 chr15 81196496 81196618 -4499136 - L1ME LINE L1 -605 5540 5423 322 313 91 30 chr15 81197468 81197666 -4498088 - L1ME LINE L1 -2225 3904 3695 2034 124 0 7 chr15 81197805 81198104 -4497650 + AluSg1 SINE Alu 3 299 -10 708 340 92 27 chr15 81198247 81198585 -4497169 - L1ME LINE L1 -4928 1191 811 2033 138 3 0 chr15 81198585 81198882 -4496872 - AluSx SINE Alu -14 298 1 708 340 92 27 chr15 81198882 81199022 -4496732 - L1ME LINE L1 -5308 811 682 800 261 93 24 chr15 81199304 81199780 -4495974 - MLT1G1 LTR MaLR 0 555 1 214 247 123 0 chr15 81201352 81201433 -4494321 + MIR3 SINE MIR 107 197 -11 1515 266 89 8 chr15 81202239 81202753 -4493001 - MLT1G LTR MaLR 0 590 35 599 158 8 0 chr15 81203682 81203809 -4491945 + (CA)n Simple_repeat Simple_repeat 1 128 0 328 336 22 0 chr15 81205123 81205260 -4490494 - MIR SINE MIR -109 153 14 202 250 0 0 chr15 81207067 81207111 -4488643 - MIR SINE MIR -58 150 107 2289 61 10 3 chr15 81207245 81207541 -4488213 + AluSp SINE Alu 1 298 -15 1766 162 3 36 chr15 81208589 81208891 -4486863 + AluJb SINE Alu 1 292 -20 299 265 88 7 chr15 81208933 81209069 -4486685 - L1ME4a LINE L1 -52 6069 5923 387 60 0 0 chr15 81210619 81210669 -4485085 + (CATA)n Simple_repeat Simple_repeat 2 51 0 367 256 11 17 chr15 81210863 81211043 -4484711 + (TG)n Simple_repeat Simple_repeat 2 180 0 277 267 11 17 chr15 81211062 81211242 -4484512 + (TG)n Simple_repeat Simple_repeat 2 180 0 310 257 11 17 chr15 81211265 81211444 -4484310 + (TG)n Simple_repeat Simple_repeat 2 179 0 280 303 112 0 chr15 81211902 81212090 -4483664 - MLT1I LTR MaLR -4 405 197 2120 113 0 3 chr15 81212380 81212682 -4483072 + AluSx SINE Alu 1 301 -11 231 256 51 68 chr15 81213395 81213512 -4482242 - MLT1J LTR MaLR -8 503 389 246 157 20 0 chr15 81213665 81213716 -4482038 - MLT1J1 LTR MaLR -324 122 71 3633 48 0 15 chr15 81214873 81215328 -4480426 - LTR7 LTR ERV1 -2 448 1 2243 102 39 13 chr15 81215328 81215710 -4480044 - HERVH LTR ERV1 0 7713 7322 1211 123 43 0 chr15 81215708 81215919 -4479835 - HERVH LTR ERV1 -1894 5819 5600 * 4175 131 0 1 chr15 81215920 81216583 -4479171 - HERVH LTR ERV1 -2564 5149 4488 3302 85 0 6 chr15 81216585 81217090 -4478664 - HERVH LTR ERV1 -3720 3993 3492 848 147 7 0 chr15 81217080 81217230 -4478524 - HERVH LTR ERV1 -4423 3290 3140 * 18797 102 7 12 chr15 81217224 81220205 -4475549 - HERVH LTR ERV1 -4726 2987 22 3273 80 23 7 chr15 81220242 81220680 -4475074 - LTR7 LTR ERV1 -4 446 2 557 298 54 10 chr15 81220719 81221014 -4474740 - L1MC4a LINE L1 -1942 5866 5559 313 354 139 22 chr15 81221153 81221482 -4474272 + L2 LINE L2 2856 3243 -70 2163 79 0 4 chr15 81221482 81221792 -4473962 + AluSx SINE Alu 7 315 0 313 354 139 22 chr15 81221792 81221865 -4473889 + L2 LINE L2 3243 3306 -7 345 319 101 29 chr15 81222083 81222221 -4473533 - L1MC4a LINE L1 -2392 5416 5269 806 180 20 7 chr15 81222350 81222500 -4473254 - FRAM SINE Alu -5 171 20 234 0 0 0 chr15 81222832 81222858 -4472896 + (A)n Simple_repeat Simple_repeat 1 26 0 387 0 0 0 chr15 81225702 81225745 -4470009 + (CA)n Simple_repeat Simple_repeat 2 44 0 339 341 102 19 chr15 81230750 81230955 -4464799 - L1ME4a LINE L1 -28 6093 5872 1861 105 8 4 chr15 81231180 81231438 -4464316 - AluSc SINE Alu -50 259 1 680 227 96 23 chr15 81233255 81233475 -4462279 - L1MC5 LINE L1 -1114 6847 6612 1798 161 0 26 chr15 81233755 81234059 -4461695 - AluJb SINE Alu -16 296 1 754 333 108 12 chr15 81234205 81234623 -4461131 + L2 LINE L2 759 1216 -2098 740 219 0 0 chr15 81234644 81234772 -4460982 - FLAM_A SINE Alu -2 131 4 213 413 61 5 chr15 81234778 81234974 -4460780 + L2 LINE L2 1721 1927 -1387 863 197 0 0 chr15 81235451 81235598 -4460156 - FAM SINE Alu -37 148 2 296 296 0 6 chr15 81236443 81236615 -4459139 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 206 289 0 0 chr15 81236631 81236683 -4459071 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 264 77 0 0 chr15 81236718 81236757 -4458997 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 2092 129 0 16 chr15 81238332 81238642 -4457112 - AluSx SINE Alu -7 305 1 1474 195 27 7 chr15 81238894 81239186 -4456568 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 81239714 81239743 -4456011 + GC_rich Low_complexity Low_complexity 1 29 0 268 342 60 13 chr15 81240336 81240485 -4455269 + MIR SINE MIR 15 170 -92 223 278 0 0 chr15 81243779 81243833 -4451921 + MIR SINE MIR 83 136 -126 548 292 116 20 chr15 81244919 81245196 -4450558 - HAL1b LINE L1 0 6121 1075 292 253 20 9 chr15 81245497 81245611 -4450143 - L1ME LINE L1 -697 5473 5359 856 210 32 16 chr15 81246071 81246257 -4449497 - MER5A DNA MER1_type 0 189 1 532 210 50 94 chr15 81246410 81246591 -4449163 - MER5B DNA MER1_type -1 177 5 764 204 76 0 chr15 81246607 81246779 -4448975 + MER5A DNA MER1_type 5 189 0 300 361 21 56 chr15 81247335 81247620 -4448134 + L1M4 LINE L1 2268 2542 -3604 312 240 0 10 chr15 81249330 81249426 -4446328 - MIR SINE MIR -43 219 125 1437 78 4 118 chr15 81250228 81250356 -4445398 - L1PA10 LINE L1 -265 5903 5815 2219 114 0 3 chr15 81250356 81250662 -4445092 - AluSq SINE Alu 0 313 9 1437 78 4 118 chr15 81250662 81250778 -4444976 - L1PA10 LINE L1 -353 5815 5687 * 2472 193 53 72 chr15 81250777 81251475 -4444279 - L1ME LINE L1 -1148 4998 4314 2344 115 0 0 chr15 81251532 81251844 -4443910 + AluSx SINE Alu 1 312 0 223 263 30 61 chr15 81251894 81251993 -4443761 + MIR3 SINE MIR 5 100 -108 1522 137 37 29 chr15 81252033 81252442 -4443312 - L1MA4A LINE L1 0 6303 5831 2305 102 0 0 chr15 81252448 81252743 -4443011 - AluSx SINE Alu -17 295 1 261 0 0 0 chr15 81252816 81252845 -4442909 + (GA)n Simple_repeat Simple_repeat 1 29 0 2815 161 25 40 chr15 81253578 81254085 -4441669 - L1M4 LINE L1 -352 5822 5323 2446 55 0 0 chr15 81254085 81254375 -4441379 - AluY SINE Alu -21 290 1 2815 161 25 40 chr15 81254375 81254674 -4441080 - L1M4 LINE L1 -851 5323 5021 * 7547 216 36 12 chr15 81254669 81256572 -4439182 - L1M4 LINE L1 -1463 4683 2736 320 104 0 0 chr15 81256700 81256748 -4439006 + L1M4 LINE L1 5122 5169 -977 201 195 0 0 chr15 81258163 81258204 -4437550 + (TG)n Simple_repeat Simple_repeat 2 42 0 2375 97 3 0 chr15 81259863 81260161 -4435593 + AluSp SINE Alu 1 299 -14 270 0 0 0 chr15 81260161 81260191 -4435563 + (TA)n Simple_repeat Simple_repeat 2 31 0 4936 234 84 18 chr15 81261110 81261452 -4434302 + L1MEc LINE L1 1541 1859 -4356 1192 185 108 35 chr15 81261452 81261766 -4433988 + MER44D DNA MER2_type 3 609 0 4936 234 84 18 chr15 81261766 81264411 -4431343 + L1MEc LINE L1 1859 4784 -1431 842 209 38 19 chr15 81264412 81264623 -4431131 + MLT1D LTR MaLR 1 215 -290 2162 182 57 7 chr15 81264659 81265077 -4430677 + L1M2 LINE L1 2 440 -6409 871 171 59 27 chr15 81265090 81265312 -4430442 - L1PB1 LINE L1 -1 6150 5922 912 141 0 0 chr15 81265863 81266349 -4429405 + (TG)n Simple_repeat Simple_repeat 2 665 0 239 192 115 26 chr15 81268143 81268221 -4427533 + MIR SINE MIR 89 173 -89 2096 108 0 0 chr15 81268556 81268824 -4426930 - AluSq SINE Alu -45 268 1 896 314 111 30 chr15 81269718 81270330 -4425424 - L1MC4a LINE L1 -1814 5994 5326 2373 100 10 0 chr15 81270330 81270639 -4425115 - AluSx SINE Alu 0 312 1 896 314 111 30 chr15 81270639 81270666 -4425088 - L1MC4a LINE L1 -2482 5326 5303 307 215 92 52 chr15 81270863 81271114 -4424640 + L1MC4a LINE L1 4400 4660 -1486 241 308 22 0 chr15 81271424 81271515 -4424239 - L1MC/D LINE L1 -2012 5796 5704 2113 105 40 3 chr15 81271805 81272101 -4423653 - AluSc SINE Alu 0 309 3 238 270 36 22 chr15 81272149 81272286 -4423468 + L1MC4a LINE L1 5344 5482 -2326 417 298 208 15 chr15 81272397 81272729 -4423025 + L1MC4a LINE L1 5562 5957 -1851 489 277 87 55 chr15 81274200 81274658 -4421096 + L1ME4a LINE L1 5644 6116 -5 180 0 0 0 chr15 81275991 81276011 -4419743 + (TG)n Simple_repeat Simple_repeat 2 21 0 1616 213 40 11 chr15 81276177 81276525 -4419229 + MER65C LTR ERV1 1 358 -103 360 0 0 0 chr15 81276525 81276565 -4419189 + (CA)n Simple_repeat Simple_repeat 2 41 0 2374 112 0 0 chr15 81276665 81276978 -4418776 + AluSq SINE Alu 1 313 0 2636 99 20 10 chr15 81276978 81277372 -4418382 + L1PA11 LINE L1 5777 6174 0 1169 219 32 20 chr15 81277372 81277714 -4418040 + L1ME2 LINE L1 4983 5328 -818 1824 144 7 20 chr15 81277714 81278012 -4417742 + AluJo SINE Alu 1 294 -18 624 152 24 19 chr15 81278015 81278226 -4417528 + GA-rich Low_complexity Low_complexity 1 212 0 2499 206 122 25 chr15 81278231 81278958 -4416796 + L1ME2 LINE L1 5357 6154 -10 326 321 31 36 chr15 81278993 81279189 -4416565 + L1MC5 LINE L1 7719 7913 -48 191 306 141 24 chr15 81280883 81281089 -4414665 - MIR SINE MIR -12 250 21 2463 68 7 0 chr15 81281122 81281416 -4414338 - AluSc SINE Alu -13 296 1 1623 174 23 20 chr15 81281422 81281798 -4413956 + MSTC LTR MaLR 1 428 0 238 180 180 0 chr15 81282028 81282089 -4413665 - L2 LINE L2 -2 3311 3240 355 289 9 9 chr15 81284020 81284134 -4411620 + MIR SINE MIR 149 262 0 14632 187 23 32 chr15 81284559 81284633 -4411121 + L1MA9 LINE L1 2718 2791 -4223 2007 110 37 0 chr15 81284633 81284906 -4410848 + AluSx SINE Alu 1 283 -29 14632 187 23 32 chr15 81284906 81286026 -4409728 + L1MA9 LINE L1 2791 3919 -3095 2214 114 0 32 chr15 81286026 81286342 -4409412 + AluSg1 SINE Alu 1 306 -3 14632 187 23 32 chr15 81286342 81288575 -4407179 + L1MA9 LINE L1 3919 6169 -845 2166 109 0 0 chr15 81288575 81288858 -4406896 + AluSg SINE Alu 1 283 -27 14632 187 23 32 chr15 81288858 81288872 -4406882 + L1MA9 LINE L1 6169 6182 -832 183 42 0 0 chr15 81288872 81288896 -4406858 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14632 187 23 32 chr15 81288896 81289232 -4406522 + L1MA9 LINE L1 6182 6519 -495 327 104 0 0 chr15 81289232 81289280 -4406474 + (TA)n Simple_repeat Simple_repeat 1 48 0 14632 187 23 32 chr15 81289280 81289814 -4405940 + L1MA9 LINE L1 6519 7012 -2 322 292 14 7 chr15 81290205 81290349 -4405405 + L1M4 LINE L1 4910 5054 -1092 1721 166 49 9 chr15 81290436 81290780 -4404974 - L1MB7 LINE L1 -2 6182 5825 2166 109 7 3 chr15 81290791 81291117 -4404637 - AluSq SINE Alu 0 327 1 1402 195 64 0 chr15 81291269 81291536 -4404218 + MSTD LTR MaLR 113 396 0 2740 138 0 0 chr15 81292410 81292822 -4402932 + L1PA15 LINE L1 5754 6165 0 393 307 15 0 chr15 81293163 81293300 -4402454 + MIR SINE MIR 82 220 -42 21 89 0 0 chr15 81293357 81293413 -4402341 + AT_rich Low_complexity Low_complexity 1 56 0 373 270 12 80 chr15 81293979 81294048 -4401706 - MIR SINE MIR -97 165 93 2954 91 96 0 chr15 81294048 81294466 -4401288 + LTR22A LTR ERVK 1 458 0 373 270 12 80 chr15 81294466 81294559 -4401195 - MIR SINE MIR -169 93 14 1741 175 7 23 chr15 81294733 81295042 -4400712 - AluJo SINE Alu -8 304 1 195 300 11 33 chr15 81295315 81295405 -4400349 + L2 LINE L2 2965 3052 -220 680 261 17 6 chr15 81295889 81296065 -4399689 - MER45A DNA AcHobo 0 178 1 2403 180 66 19 chr15 81296241 81296454 -4399300 + L1MC2 LINE L1 5770 5971 -373 216 0 0 0 chr15 81296454 81296478 -4399276 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 2403 180 66 19 chr15 81296478 81296792 -4398962 + L1MC2 LINE L1 5971 6322 -22 284 163 23 81 chr15 81296934 81297020 -4398734 + L1MC2 LINE L1 6264 6344 0 775 171 56 121 chr15 81297533 81297765 -4397989 + MER33 DNA MER1_type 2 209 -2376 1482 157 12 12 chr15 81297765 81298014 -4397740 - AluJb SINE Alu -9 303 55 775 171 56 121 chr15 81298014 81298103 -4397651 + MER33 DNA MER1_type 209 302 -22 270 232 14 14 chr15 81298462 81298531 -4397223 - MIR SINE MIR -125 137 69 320 348 100 29 chr15 81299143 81299353 -4396401 - MIR SINE MIR -10 252 28 701 250 87 32 chr15 81300013 81300265 -4395489 - L1ME3A LINE L1 -25 6145 5880 * 3947 207 87 21 chr15 81300247 81301396 -4394358 - L1MD2 LINE L1 0 6753 5517 3032 234 27 63 chr15 81301410 81302437 -4393317 - L1MD2 LINE L1 -1901 4639 3650 * 5347 216 137 37 chr15 81302419 81304042 -4391712 - L1MD2 LINE L1 -4746 1794 10 748 314 24 51 chr15 81304032 81304622 -4391132 - L1MC4a LINE L1 -1927 5881 5308 * 1010 282 94 11 chr15 81304604 81305168 -4390586 - L1MC4a LINE L1 -2447 3699 3089 3083 87 9 5 chr15 81305466 81305901 -4389853 - L1PB1 LINE L1 -134 6017 5581 270 211 18 0 chr15 81305898 81305955 -4389799 + L1MA4A LINE L1 426 483 -6366 * 10858 179 76 17 chr15 81306026 81308577 -4387177 + L1MA4A LINE L1 679 3381 -3467 1301 199 15 40 chr15 81308551 81308952 -4386802 + L1MA4A LINE L1 3795 4185 -2663 * 6397 135 25 2 chr15 81308941 81310572 -4385182 + L1MA4A LINE L1 5341 7002 -3 958 231 98 0 chr15 81310575 81310778 -4384976 + MLT1D LTR MaLR 283 505 0 3409 220 70 17 chr15 81310783 81311269 -4384485 + L1ME2 LINE L1 4717 5176 -988 1190 39 59 0 chr15 81311269 81311422 -4384332 + L1PA4 LINE L1 5994 6155 0 3409 220 70 17 chr15 81311422 81311677 -4384077 + L1ME2 LINE L1 5176 5416 -748 2300 71 3 0 chr15 81311677 81311971 -4383783 + AluY SINE Alu 1 295 -16 3409 220 70 17 chr15 81311971 81312590 -4383164 + L1ME2 LINE L1 5416 6151 -13 2126 128 23 3 chr15 81312593 81312936 -4382818 + L1PB1 LINE L1 5794 6143 -8 2031 134 0 0 chr15 81313818 81314124 -4381630 - AluSx SINE Alu -6 306 1 3123 224 35 3 chr15 81314982 81315615 -4380139 - MER82 DNA MER2_type 0 653 1 211 310 88 26 chr15 81315618 81315731 -4380023 + L2 LINE L2 3126 3245 -27 233 283 0 0 chr15 81315747 81315807 -4379947 + GA-rich Low_complexity Low_complexity 3 62 0 192 288 203 34 chr15 81316581 81316699 -4379055 - MIR SINE MIR -14 248 111 207 326 98 22 chr15 81316980 81317072 -4378682 + MIR SINE MIR 93 191 -71 2303 171 40 0 chr15 81317875 81318279 -4377475 + MSTB LTR MaLR 1 420 -6 738 55 11 0 chr15 81320374 81320465 -4375289 - AluSc SINE Alu -22 287 196 384 262 0 119 chr15 81320643 81320769 -4374985 + MER5B DNA MER1_type 68 178 0 403 176 245 0 chr15 81320806 81320908 -4374846 + AluJb SINE Alu 186 312 0 393 22 0 0 chr15 81321896 81321942 -4373812 + (CA)n Simple_repeat Simple_repeat 2 47 0 374 306 137 39 chr15 81322723 81323038 -4372716 + L1MC4a LINE L1 5537 5893 -1915 2152 106 3 3 chr15 81323038 81323340 -4372414 + AluSg SINE Alu 2 303 -7 374 306 137 39 chr15 81323340 81323383 -4372371 + L1MC4a LINE L1 5893 5930 -1878 373 246 34 77 chr15 81325396 81325688 -4370066 - L1M LINE L1 -747 5399 5139 2199 121 24 24 chr15 81325937 81326275 -4369479 - MER1B DNA MER1_type -1 338 1 817 180 18 54 chr15 81327056 81327223 -4368531 + MLT1A2 LTR MaLR 1 161 -213 917 62 0 0 chr15 81327224 81327336 -4368418 + AluSx SINE Alu 1 112 -201 388 210 40 12 chr15 81327424 81327528 -4368226 + MLT1B LTR MaLR 69 186 -204 1372 82 0 0 chr15 81327540 81327724 -4368030 + AluSx SINE Alu 121 304 -8 578 254 90 6 chr15 81327738 81327915 -4367839 + MLT1B LTR MaLR 158 374 -16 329 294 73 0 chr15 81327934 81328043 -4367711 + MIR SINE MIR 117 233 -29 1913 161 52 11 chr15 81328830 81329197 -4366557 + MLT1B LTR MaLR 3 384 -6 746 246 0 12 chr15 81330074 81330241 -4365513 - FRAM SINE Alu 0 166 2 255 61 0 0 chr15 81332092 81332125 -4363629 + (CA)n Simple_repeat Simple_repeat 2 34 0 2021 111 0 29 chr15 81332217 81332523 -4363231 - AluSc SINE Alu -12 297 1 2170 111 3 0 chr15 81333824 81334130 -4361624 + AluSg SINE Alu 1 307 -3 206 308 15 0 chr15 81334433 81334498 -4361256 + MIR SINE MIR 81 146 -62 1950 225 44 29 chr15 81335387 81335538 -4360216 + MER89 LTR ERV1 4 151 -408 1989 82 48 20 chr15 81335538 81335831 -4359923 - AluSx SINE Alu 0 312 12 1950 225 44 29 chr15 81335831 81336226 -4359528 + MER89 LTR ERV1 151 558 -1 2783 250 63 81 chr15 81336835 81338193 -4357561 - L1MC4 LINE L1 0 8042 6709 217 308 15 0 chr15 81338313 81338378 -4357376 + MIR3 SINE MIR 126 191 -17 2247 100 34 74 chr15 81339913 81340292 -4355462 + THE1B LTR MaLR 1 364 0 1919 144 10 3 chr15 81340679 81340984 -4354770 + AluSx SINE Alu 1 307 -5 1624 217 65 32 chr15 81342823 81343266 -4352488 + MLT1C LTR MaLR 1 458 -9 192 191 75 96 chr15 81344602 81344696 -4351058 + MIR SINE MIR 97 188 -74 705 208 3 0 chr15 81344782 81345086 -4350668 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 271 355 66 37 chr15 81345105 81345347 -4350407 - L2 LINE L2 -32 3281 3033 2036 109 10 10 chr15 81345510 81345812 -4349942 - AluSx SINE Alu -9 303 2 276 288 43 38 chr15 81345979 81346260 -4349494 - L1MC4 LINE L1 -882 5477 5312 212 256 13 0 chr15 81346587 81346665 -4349089 + (TA)n Simple_repeat Simple_repeat 2 80 0 778 206 26 0 chr15 81349253 81349408 -4346346 - MER5B DNA MER1_type 0 178 20 350 313 67 50 chr15 81349452 81349631 -4346123 + MIR SINE MIR 48 229 -33 411 203 268 32 chr15 81349692 81349815 -4345939 - MIR SINE MIR -4 258 107 346 359 60 18 chr15 81349950 81350234 -4345520 + L1MC/D LINE L1 2142 2437 -3709 242 282 0 0 chr15 81350306 81350384 -4345370 + (TA)n Simple_repeat Simple_repeat 2 79 0 377 292 100 15 chr15 81350508 81350638 -4345116 - MIR SINE MIR -10 252 112 594 348 58 38 chr15 81350736 81350751 -4345003 + L1MC/D LINE L1 3085 3098 -3048 2025 125 26 0 chr15 81350751 81351054 -4344700 + AluSq SINE Alu 1 311 -2 594 348 58 38 chr15 81351054 81351432 -4344322 + L1MC/D LINE L1 3098 3486 -2660 517 327 93 12 chr15 81351484 81352212 -4343542 + L1MC/D LINE L1 3589 4375 -1771 480 307 72 50 chr15 81352403 81353259 -4342495 + L1MC/D LINE L1 4677 5550 -743 1955 196 138 19 chr15 81354237 81354700 -4341054 + MLT2B1 LTR ERVL 3 520 0 1245 282 137 40 chr15 81354777 81355912 -4339842 - L2 LINE L2 0 3313 2059 309 289 70 14 chr15 81356202 81356344 -4339410 - L1MC4 LINE L1 -1316 4830 4681 2449 55 3 3 chr15 81356356 81356646 -4339108 - AluSc SINE Alu -19 290 1 264 304 98 27 chr15 81357236 81357335 -4338419 + L2 LINE L2 3194 3303 -10 1316 191 125 4 chr15 81357335 81357607 -4338147 + AluJb SINE Alu 1 305 -7 264 304 98 27 chr15 81357607 81357619 -4338135 + L2 LINE L2 3303 3313 0 836 159 0 0 chr15 81357956 81358082 -4337672 + FLAM_C SINE Alu 1 126 -17 444 141 77 0 chr15 81358428 81358506 -4337248 + MSTC LTR MaLR 1 84 -344 327 109 0 36 chr15 81358502 81358557 -4337197 - AluSp/q SINE Alu -10 293 241 * 2251 103 3 0 chr15 81358695 81358987 -4336767 + AluSc SINE Alu 2 294 -15 2094 217 71 120 chr15 81358989 81359737 -4336017 + MER21B LTR ERV1 24 724 -139 300 53 0 0 chr15 81359737 81359775 -4335979 + (GGATG)n Simple_repeat Simple_repeat 5 42 0 2094 217 71 120 chr15 81359775 81359898 -4335856 + MER21B LTR ERV1 724 852 -11 443 229 0 7 chr15 81360239 81360379 -4335375 + (CCCTAA)n Simple_repeat Simple_repeat 1 139 0 204 320 13 13 chr15 81361246 81361396 -4334358 + (ACTTG)n Simple_repeat Simple_repeat 4 153 0 3145 177 92 28 chr15 81361664 81362140 -4333614 + L1MC3 LINE L1 7030 7474 -311 2094 126 3 3 chr15 81362140 81362434 -4333320 + AluSx SINE Alu 1 294 -18 3145 177 92 28 chr15 81362434 81362476 -4333278 + L1MC3 LINE L1 7474 7512 -273 258 32 0 0 chr15 81362476 81362507 -4333247 + (CA)n Simple_repeat Simple_repeat 2 32 0 3145 177 92 28 chr15 81362507 81362692 -4333062 + L1MC3 LINE L1 7512 7779 -6 857 134 0 40 chr15 81363749 81363898 -4331856 - FLAM_C SINE Alu 0 143 1 261 0 0 0 chr15 81364024 81364053 -4331701 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 2193 117 7 0 chr15 81364063 81364372 -4331382 - AluY SINE Alu 0 311 1 262 265 0 12 chr15 81364864 81364947 -4330807 + GA-rich Low_complexity Low_complexity 1 82 0 436 104 0 0 chr15 81364951 81365018 -4330736 + Alu SINE Alu 245 311 0 949 240 14 5 chr15 81365959 81366176 -4329578 + MER20 DNA MER1_type 1 219 0 5609 45 10 20 chr15 81366658 81367325 -4328429 - L1PA2 LINE L1 -1 6154 5493 2045 131 7 0 chr15 81367325 81367616 -4328138 - AluSx SINE Alu -17 295 3 5609 45 10 20 chr15 81367616 81367655 -4328099 - L1PA2 LINE L1 -662 5493 5455 194 176 212 12 chr15 81370216 81370301 -4325453 + L2 LINE L2 3169 3270 -2 243 0 0 0 chr15 81370972 81370999 -4324755 + (CAAAAA)n Simple_repeat Simple_repeat 6 32 0 534 259 46 10 chr15 81371128 81371325 -4324429 - MER20 DNA MER1_type -14 205 2 224 170 19 0 chr15 81371958 81372011 -4323743 + (CAGAA)n Simple_repeat Simple_repeat 2 55 0 252 289 13 0 chr15 81372893 81372969 -4322785 + MER103 DNA DNA 13 89 -77 380 320 0 33 chr15 81374704 81374826 -4320928 - MER91A DNA MER1_type -27 169 52 977 205 60 5 chr15 81375154 81375354 -4320400 + MLT1D LTR MaLR 1 211 -294 353 246 27 9 chr15 81375354 81375464 -4320290 + MIR SINE MIR 70 181 -81 1494 101 30 5 chr15 81375464 81375663 -4320091 + AluSq SINE Alu 1 204 -109 762 251 11 6 chr15 81375673 81375856 -4319898 - L1MC1 LINE L1 -76 6257 6074 1325 153 43 0 chr15 81375856 81376065 -4319689 - MLT1A1 LTR MaLR 0 365 148 858 121 0 0 chr15 81376071 81376195 -4319559 - AluSp/q SINE Alu -8 305 182 775 197 7 33 chr15 81376199 81376351 -4319403 - MLT1A1 LTR MaLR -217 148 1 3516 153 61 45 chr15 81376352 81377044 -4318710 - L1MC1 LINE L1 -258 6075 5373 1228 201 157 68 chr15 81378905 81379333 -4316421 + MER31B LTR ERV1 1 466 0 2319 106 0 3 chr15 81380584 81380895 -4314859 - AluSg SINE Alu 0 310 1 677 167 54 40 chr15 81380961 81381142 -4314612 + MER31B LTR ERV1 7 235 -250 2324 64 0 3 chr15 81381150 81381468 -4314286 - AluY SINE Alu 0 317 1 351 193 53 70 chr15 81381469 81381569 -4314185 + L1MC4 LINE L1 7807 7906 -136 531 0 0 0 chr15 81381569 81381628 -4314126 + (AATAG)n Simple_repeat Simple_repeat 1 59 0 351 193 53 70 chr15 81381628 81381641 -4314113 + L1MC4 LINE L1 7906 7918 -124 22 0 0 0 chr15 81382067 81382089 -4313665 + AT_rich Low_complexity Low_complexity 1 22 0 438 290 120 0 chr15 81382169 81382352 -4313402 - MIR SINE MIR -51 211 7 626 213 99 3 chr15 81382555 81382724 -4313030 - LTR51 LTR ERV1 -119 738 389 * 2578 201 48 70 chr15 81382718 81383450 -4312304 + MER50 LTR ERV1 10 725 -9 758 221 20 0 chr15 81383454 81383603 -4312151 - LTR51 LTR ERV1 -284 387 236 1706 168 14 14 chr15 81383829 81384126 -4311628 - AluJo SINE Alu -15 297 1 2426 94 0 0 chr15 81384218 81384527 -4311227 - AluSg SINE Alu 0 310 2 1717 177 0 13 chr15 81385444 81385743 -4310011 - AluJo SINE Alu -7 305 11 2072 113 28 3 chr15 81386105 81386388 -4309366 + AluSx SINE Alu 1 290 -22 1603 172 11 14 chr15 81386393 81386672 -4309082 + AluSc SINE Alu 1 278 -31 396 0 0 0 chr15 81386674 81386718 -4309036 + (CA)n Simple_repeat Simple_repeat 2 45 0 11811 85 11 11 chr15 81387223 81388798 -4306956 - THE1B-int LTR MaLR -5 1575 1 2266 124 48 22 chr15 81388798 81389153 -4306601 - THE1B LTR MaLR 0 364 1 561 304 111 18 chr15 81389235 81389515 -4306239 - MLT1L LTR MaLR -2 613 308 330 239 0 14 chr15 81390101 81390172 -4305582 - LTR28 LTR ERV1 0 1020 951 4824 181 39 5 chr15 81391423 81392415 -4303339 + L1MB7 LINE L1 5155 6184 0 506 118 75 0 chr15 81393206 81393299 -4302455 + HERVH LTR ERV1 3191 3290 -4423 * 3409 110 6 6 chr15 81393289 81393791 -4301963 + HERVH LTR ERV1 3492 3993 -3720 4507 136 0 1 chr15 81393793 81394456 -4301298 + HERVH LTR ERV1 4488 5149 -2564 1345 118 43 0 chr15 81394457 81394668 -4301086 + HERVH LTR ERV1 5600 5819 -1894 * 2512 99 39 13 chr15 81394666 81395048 -4300706 + HERVH LTR ERV1 7322 7713 0 3510 55 0 15 chr15 81395048 81395503 -4300251 + LTR7 LTR ERV1 1 448 -2 617 266 133 65 chr15 81395903 81396475 -4299279 - MLT1L LTR MaLR 0 615 5 21 36 0 0 chr15 81397072 81397100 -4298654 + AT_rich Low_complexity Low_complexity 1 28 0 365 286 55 39 chr15 81397400 81397582 -4298172 - MIR SINE MIR -58 204 20 1085 211 0 12 chr15 81397633 81397880 -4297874 - MER41B LTR ERV1 0 635 392 981 93 0 8 chr15 81398031 81398160 -4297594 - AluSq/x SINE Alu -179 133 6 1474 140 34 93 chr15 81398311 81398633 -4297121 - AluJb SINE Alu -9 303 1 2024 130 23 10 chr15 81398644 81398952 -4296802 - AluSx SINE Alu 0 312 1 1292 206 29 39 chr15 81399349 81399660 -4296094 - AluJo SINE Alu -4 308 1 1585 198 0 18 chr15 81399949 81400232 -4295522 + AluSx SINE Alu 20 297 -15 1612 138 0 16 chr15 81400408 81400662 -4295092 + THE1-int LTR MaLR 619 868 -712 637 228 7 0 chr15 81400666 81400802 -4294952 + L1P LINE L1 4187 4323 -1823 1899 142 3 3 chr15 81400809 81401112 -4294642 + AluSx SINE Alu 3 305 -7 1476 85 39 61 chr15 81401207 81401416 -4294338 + L1P4 LINE L1 5128 5331 -834 2297 116 0 13 chr15 81401416 81401726 -4294028 + AluSq SINE Alu 1 306 -7 1476 85 39 61 chr15 81401726 81401894 -4293860 + L1P4 LINE L1 5331 5501 -664 1953 125 18 4 chr15 81401894 81402175 -4293579 + AluSq SINE Alu 1 285 -28 477 0 0 0 chr15 81402175 81402228 -4293526 + (CTAAA)n Simple_repeat Simple_repeat 3 55 0 1969 106 8 0 chr15 81402239 81402503 -4293251 + AluSx SINE Alu 1 266 -46 1372 128 0 137 chr15 81402506 81402663 -4293091 - AluJb SINE Alu -40 272 178 1437 117 147 71 chr15 81402663 81402929 -4292825 - AluSx SINE Alu -26 286 1 1372 128 0 137 chr15 81402929 81403084 -4292670 - AluJb SINE Alu -134 178 3 251 184 0 0 chr15 81403131 81403169 -4292585 - Alu SINE Alu -16 286 249 418 253 204 6 chr15 81405050 81405212 -4290542 - L2 LINE L2 -5 3308 3115 689 255 41 28 chr15 81405278 81405695 -4290059 + L1ME LINE L1 5135 5558 -606 2267 101 7 13 chr15 81406168 81406475 -4289279 - AluSx SINE Alu -7 305 1 296 242 32 0 chr15 81406868 81406963 -4288791 - HAL1 LINE L1 -171 2336 2239 364 169 39 0 chr15 81407359 81407436 -4288318 + MIR SINE MIR 168 247 -15 481 244 54 18 chr15 81407464 81407632 -4288122 - MER104 DNA MER2_type -3 177 4 381 262 90 0 chr15 81407821 81407966 -4287788 - HAL1 LINE L1 -726 1781 1624 710 174 0 0 chr15 81407996 81408105 -4287649 - FLAM_C SINE Alu -34 109 1 334 292 119 38 chr15 81408154 81408339 -4287415 - HAL1 LINE L1 -1495 1012 813 2110 86 54 0 chr15 81408342 81408620 -4287134 + AluSp SINE Alu 3 295 -18 426 307 75 16 chr15 81408903 81409291 -4286463 - L1M4 LINE L1 -1263 4883 4473 243 0 0 0 chr15 81409304 81409331 -4286423 + (TG)n Simple_repeat Simple_repeat 2 28 0 5575 60 11 4 chr15 81409336 81410087 -4285667 - MER4E LTR ERV1 -10 756 1 618 272 54 14 chr15 81410182 81410458 -4285296 - L1M4 LINE L1 -1792 4354 4068 26 74 0 0 chr15 81410478 81410532 -4285222 + AT_rich Low_complexity Low_complexity 1 54 0 270 232 28 39 chr15 81411422 81411603 -4284151 + (TA)n Simple_repeat Simple_repeat 2 180 0 195 170 0 0 chr15 81411697 81411744 -4284010 + (TA)n Simple_repeat Simple_repeat 1 47 0 30 0 0 0 chr15 81411755 81411785 -4283969 + AT_rich Low_complexity Low_complexity 1 30 0 429 85 0 0 chr15 81411785 81411844 -4283910 + AluSp/q SINE Alu 235 293 -20 339 277 28 11 chr15 81411851 81412028 -4283726 + (TA)n Simple_repeat Simple_repeat 1 180 0 478 265 62 29 chr15 81412390 81412662 -4283092 - L1ME1 LINE L1 -76 6090 5810 4221 203 18 37 chr15 81412675 81413889 -4281865 - L1MC2 LINE L1 -26 6318 5127 187 303 22 11 chr15 81414759 81414848 -4280906 - MIR SINE MIR -159 103 14 401 287 122 82 chr15 81415191 81415765 -4279989 + L2 LINE L2 2678 3271 -1 222 37 0 0 chr15 81417429 81417456 -4278298 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 39 0 0 chr15 81417630 81417656 -4278098 + (TTA)n Simple_repeat Simple_repeat 2 27 0 249 238 99 16 chr15 81419039 81419203 -4276551 - L1ME1 LINE L1 -411 5751 5567 317 267 115 0 chr15 81419227 81419392 -4276362 - L1P5 LINE L1 -714 5437 5254 996 198 38 9 chr15 81420459 81420671 -4275083 + MER20 DNA MER1_type 2 219 0 459 281 63 51 chr15 81420782 81421035 -4274719 + MIR SINE MIR 5 260 -2 496 249 17 29 chr15 81421092 81421265 -4274489 - MER104 DNA Tc2 0 180 10 266 291 107 15 chr15 81421861 81422007 -4273747 - MIR SINE MIR -66 196 29 288 81 0 0 chr15 81422180 81422217 -4273537 - Tigger2 DNA MER2_type -2680 38 2 220 347 204 11 chr15 81422494 81422670 -4273084 + MIR SINE MIR 53 262 0 853 303 20 8 chr15 81422688 81422939 -4272815 + MIR SINE MIR 9 262 0 315 329 73 0 chr15 81422970 81423107 -4272647 - MIR SINE MIR -6 256 110 309 264 85 91 chr15 81423472 81423790 -4271964 - L2 LINE L2 -34 3279 2964 2337 110 0 3 chr15 81424300 81424609 -4271145 - AluSg SINE Alu -2 308 1 1638 256 48 33 chr15 81424900 81425440 -4270314 - MER77 LTR ERV1 -4 601 54 393 123 37 12 chr15 81425476 81425557 -4270197 - L1MA7 LINE L1 -3 6288 6206 280 258 192 17 chr15 81428049 81428169 -4267585 + MIR SINE MIR 65 205 -57 205 326 42 0 chr15 81428496 81428591 -4267163 + CT-rich Low_complexity Low_complexity 5 103 0 482 281 126 0 chr15 81429987 81430154 -4265600 + MER5A DNA MER1_type 1 188 -1 1914 180 115 22 chr15 81430216 81430592 -4265162 + MLT1D LTR MaLR 1 429 -76 939 64 41 177 chr15 81430592 81430812 -4264942 + MER30B DNA MER1_type 1 190 0 1914 180 115 22 chr15 81430812 81430897 -4264857 + MLT1D LTR MaLR 429 505 0 927 216 35 94 chr15 81431526 81431929 -4263825 - LTR37B LTR ERV1 0 468 90 922 164 6 6 chr15 81431967 81432138 -4263616 - MER39 LTR ERV1 0 707 537 1017 167 98 23 chr15 81432246 81432552 -4263202 + Charlie1 DNA MER1_type 2426 2754 -7 8203 106 25 29 chr15 81432609 81432946 -4262808 + HSMAR2 DNA Mariner 1 338 -964 2117 130 0 0 chr15 81432946 81433230 -4262524 + AluSx SINE Alu 1 284 -28 8203 106 25 29 chr15 81433230 81434198 -4261556 + HSMAR2 DNA Mariner 338 1301 -1 644 221 117 29 chr15 81434618 81434858 -4260896 + L1MC4 LINE L1 7602 7862 -180 22 35 0 0 chr15 81435376 81435405 -4260349 + AT_rich Low_complexity Low_complexity 1 29 0 1841 121 6 82 chr15 81435546 81435861 -4259893 + AluSx SINE Alu 1 291 -21 2243 81 0 10 chr15 81435864 81436162 -4259592 + AluY SINE Alu 1 295 -16 1246 212 60 11 chr15 81436358 81436641 -4259113 + AluJo SINE Alu 1 297 -15 2124 98 13 36 chr15 81436669 81436975 -4258779 + AluSx SINE Alu 1 299 -13 2419 71 0 7 chr15 81437106 81437401 -4258353 + AluY SINE Alu 1 293 -18 467 296 40 13 chr15 81437427 81437579 -4258175 - LTR52 LTR ERVL -265 156 1 1672 165 15 15 chr15 81437655 81437982 -4257772 + THE1B LTR MaLR 1 327 -37 1812 150 7 20 chr15 81438264 81438564 -4257190 + AluJo SINE Alu 12 307 -5 2506 81 0 0 chr15 81438564 81438870 -4256884 + AluY SINE Alu 1 307 -4 735 125 62 0 chr15 81438871 81438999 -4256755 + MER31-int LTR ERV1 4074 4209 -727 268 210 136 12 chr15 81439018 81439099 -4256655 + LTR37A LTR ERV1 1 91 -335 863 194 13 80 chr15 81439110 81439347 -4256407 + MER31-int LTR ERV1 4340 4560 -376 1570 201 64 39 chr15 81439384 81439837 -4255917 + MER31B LTR ERV1 1 661 0 2287 86 0 49 chr15 81440572 81440897 -4254857 - AluSc SINE Alu 0 309 1 30 27 0 0 chr15 81441423 81441460 -4254294 + AT_rich Low_complexity Low_complexity 1 37 0 2223 97 31 0 chr15 81441558 81441846 -4253908 + AluSq SINE Alu 1 297 -16 415 273 55 0 chr15 81441918 81442028 -4253726 - MIR SINE MIR -136 126 11 198 0 0 0 chr15 81444143 81444165 -4251589 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 2180 133 0 25 chr15 81444268 81444584 -4251170 - AluSx SINE Alu -4 308 1 248 282 0 14 chr15 81445225 81445296 -4250458 + (TA)n Simple_repeat Simple_repeat 2 71 0 606 211 15 0 chr15 81445354 81445487 -4250267 + MER58B DNA MER1_type 201 335 -6 2022 147 3 7 chr15 81445526 81445832 -4249922 + AluSx SINE Alu 5 309 -3 2309 92 20 7 chr15 81446791 81447094 -4248660 + AluSq SINE Alu 1 307 -6 1156 160 14 47 chr15 81447645 81447857 -4247897 + AluJb SINE Alu 106 310 -2 28 29 0 0 chr15 81447966 81448001 -4247753 + AT_rich Low_complexity Low_complexity 1 35 0 252 216 32 56 chr15 81448061 81448186 -4247568 - L1MC4 LINE L1 -19 8023 7902 2424 82 3 0 chr15 81448571 81448875 -4246879 + AluSp SINE Alu 1 305 -8 1431 167 35 44 chr15 81448877 81449014 -4246740 - HERVL68 LTR ERVL -1084 1953 1816 4023 87 9 0 chr15 81449014 81449563 -4246191 + MER41A LTR ERV1 1 554 0 1431 167 35 44 chr15 81449563 81449743 -4246011 - HERVL68 LTR ERVL -1221 1816 1639 2173 134 3 0 chr15 81449887 81450192 -4245562 - AluJb SINE Alu -6 306 1 415 211 192 0 chr15 81450663 81450767 -4244987 + L2 LINE L2 3190 3313 0 237 65 0 0 chr15 81451230 81451261 -4244493 + (TA)n Simple_repeat Simple_repeat 2 32 0 305 346 37 0 chr15 81451391 81451527 -4244227 + MIR SINE MIR 36 176 -86 186 288 88 12 chr15 81451732 81451812 -4243942 - MIR SINE MIR -86 176 91 729 190 52 35 chr15 81453179 81453353 -4242401 - MER45A DNA AcHobo -1 177 1 213 121 0 0 chr15 81454200 81454233 -4241521 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1327 201 77 43 chr15 81455173 81455264 -4240490 - MER58B DNA MER1_type -2082 338 252 2451 83 0 0 chr15 81455264 81455566 -4240188 + AluSg SINE Alu 1 302 -8 1327 201 77 43 chr15 81455566 81455798 -4239956 - MER58B DNA MER1_type -2168 252 4 542 234 0 0 chr15 81455808 81455919 -4239835 - Charlie4 DNA MER1_type 0 1961 1851 278 179 71 36 chr15 81455916 81456000 -4239754 + Charlie4 DNA MER1_type 1755 1841 -120 * 1368 214 39 29 chr15 81456152 81456536 -4239218 - Charlie4a DNA MER1_type -120 388 1 208 182 20 223 chr15 81456706 81456783 -4238971 + MIR SINE MIR 70 105 -157 2474 47 7 0 chr15 81456783 81457079 -4238675 - AluY SINE Alu -13 298 1 208 182 20 223 chr15 81457079 81457149 -4238605 + MIR SINE MIR 105 187 -75 449 299 126 0 chr15 81457644 81457818 -4237936 + MIR SINE MIR 11 206 -56 22 0 0 0 chr15 81457848 81457870 -4237884 + AT_rich Low_complexity Low_complexity 1 22 0 360 289 26 46 chr15 81459313 81459465 -4236289 + MIR SINE MIR 68 216 -46 189 107 0 0 chr15 81459632 81459660 -4236094 + (AATAG)n Simple_repeat Simple_repeat 3 30 0 203 229 36 24 chr15 81461256 81461339 -4234415 + CT-rich Low_complexity Low_complexity 6 89 0 216 271 47 24 chr15 81461610 81461695 -4234059 - L2 LINE L2 -1 3312 3226 263 261 26 124 chr15 81463277 81463430 -4232324 + L2 LINE L2 3173 3310 -3 470 119 0 0 chr15 81463996 81464069 -4231685 + MER34C LTR ERV1 1 70 -472 1838 174 91 43 chr15 81464086 81464524 -4231230 + LTR2B LTR ERV1 32 490 0 1851 188 9 15 chr15 81464524 81464865 -4230889 + MER34B LTR ERV1 51 389 -176 241 296 37 0 chr15 81464877 81464958 -4230796 - L2 LINE L2 -989 2325 2242 329 195 78 0 chr15 81466013 81466090 -4229664 - MIR SINE MIR -90 172 90 2387 165 28 5 chr15 81466103 81466490 -4229264 - MSTD LTR MaLR 0 396 1 232 170 19 19 chr15 81466587 81466640 -4229114 + L2 LINE L2 3261 3313 0 1195 166 11 5 chr15 81466770 81466957 -4228797 + MER5A DNA MER1_type 1 188 -1 892 269 44 8 chr15 81467111 81467360 -4228394 - MIR SINE MIR -1 261 4 414 241 18 112 chr15 81467393 81467563 -4228191 - MIR SINE MIR -19 243 90 460 221 11 0 chr15 81467834 81467929 -4227825 - L2 LINE L2 -1 3271 3176 1067 39 0 8 chr15 81468290 81468418 -4227336 + L1MA2 LINE L1 6178 6304 0 200 246 70 18 chr15 81468901 81468958 -4226796 + L2 LINE L2 3209 3268 -4 266 219 44 37 chr15 81468975 81469068 -4226686 + MER5A DNA MER1_type 87 189 0 641 249 11 38 chr15 81469096 81469281 -4226473 + LTR67 LTR ERVL 10 189 -368 656 295 87 30 chr15 81469288 81469657 -4226097 + L1ME LINE L1 5412 5801 -361 794 132 23 23 chr15 81469975 81470104 -4225650 + FRAM SINE Alu 29 157 -19 624 307 69 5 chr15 81470148 81470366 -4225388 + MIR SINE MIR 7 238 -24 2455 56 0 0 chr15 81473374 81473662 -4222092 - AluSx SINE Alu -24 288 1 1339 64 0 6 chr15 81474430 81474603 -4221151 - AluY SINE Alu -3 308 137 804 103 0 26 chr15 81474603 81474720 -4221034 + AluSg/x SINE Alu 180 293 -19 323 250 50 17 chr15 81475023 81475143 -4220611 + L1MDa LINE L1 1297 1420 -5003 625 149 25 8 chr15 81475144 81475265 -4220489 + L1M4 LINE L1 2801 2923 -3223 706 233 159 0 chr15 81475923 81476086 -4219668 + MER5A DNA MER1_type 1 189 0 1856 144 3 10 chr15 81476574 81476865 -4218889 - AluSx SINE Alu -15 297 9 2274 78 7 0 chr15 81478522 81478831 -4216923 + AluSp SINE Alu 1 311 0 285 152 45 15 chr15 81478834 81478900 -4216854 + HAL1 LINE L1 1572 1639 -868 300 291 50 22 chr15 81479066 81479245 -4216509 + L1MC5 LINE L1 3464 3647 -3294 1709 171 3 18 chr15 81479279 81479565 -4216189 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr15 81479569 81479594 -4216160 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr15 81479687 81479734 -4216020 + AT_rich Low_complexity Low_complexity 1 47 0 232 226 0 97 chr15 81479863 81479956 -4215798 - L2 LINE L2 -9 3263 3180 641 280 95 13 chr15 81480506 81480741 -4215013 - MIR SINE MIR 0 262 5 2434 80 3 6 chr15 81480884 81481196 -4214558 + AluY SINE Alu 1 311 0 180 154 0 0 chr15 81481930 81481956 -4213798 - L3b LINE CR1 -264 1319 1294 607 88 0 0 chr15 81532090 81532170 -4163584 + AluSp/q SINE Alu 221 300 -13 317 305 144 35 chr15 81532227 81532483 -4163271 + L2 LINE L2 2921 3204 -109 2014 116 51 0 chr15 81533318 81533594 -4162160 + AluSg SINE Alu 1 290 -20 3619 194 68 46 chr15 81535193 81536309 -4159445 + L1MDa LINE L1 1390 2530 -4411 729 336 41 27 chr15 81536509 81537384 -4158370 + L1MC5 LINE L1 5075 5964 -977 799 276 142 18 chr15 81537443 81538000 -4157754 + L1MC5 LINE L1 6067 6692 -1911 2734 204 63 118 chr15 81538368 81539845 -4155909 + L1MC5 LINE L1 7330 8736 -20 27 0 0 0 chr15 81540424 81540451 -4155303 + AT_rich Low_complexity Low_complexity 1 27 0 1393 88 0 5 chr15 81540451 81540644 -4155110 - L1PB1 LINE L1 -2 6149 5958 360 276 0 0 chr15 81541038 81541280 -4154474 + G-rich Low_complexity Low_complexity 1 242 0 438 237 0 0 chr15 81541309 81541448 -4154306 + G-rich Low_complexity Low_complexity 1 139 0 219 253 0 0 chr15 81541465 81541560 -4154194 + G-rich Low_complexity Low_complexity 1 95 0 244 271 0 0 chr15 81541635 81541789 -4153965 + G-rich Low_complexity Low_complexity 1 154 0 611 256 25 6 chr15 81542558 81542718 -4153036 - L1MA10 LINE L1 -1 6333 6171 2829 209 22 2 chr15 81545089 81545676 -4150078 + L1MB7 LINE L1 5585 6183 -1 2290 97 0 3 chr15 81545770 81546070 -4149684 - AluSg SINE Alu -11 299 1 1399 233 0 0 chr15 81546308 81546595 -4149159 - AluJo SINE Alu -17 295 9 550 217 31 8 chr15 81546641 81546770 -4148984 + MIR SINE MIR 80 211 -51 1765 93 0 62 chr15 81546773 81547030 -4148724 + AluSq SINE Alu 3 243 -70 11195 26 25 81 chr15 81547138 81548660 -4147094 + SVA Other Other 1 1439 0 1006 184 96 93 chr15 81549731 81550107 -4145647 + MER63 DNA MER1_type 680 1056 -5 2178 122 0 0 chr15 81550408 81550704 -4145050 - AluSx SINE Alu -16 296 1 195 289 96 12 chr15 81553397 81553480 -4142274 - MIR SINE MIR -92 170 81 309 297 127 51 chr15 81553555 81554012 -4141742 + L1M2 LINE L1 871 1472 -5377 402 195 18 9 chr15 81554401 81554514 -4141240 + GA-rich Low_complexity Low_complexity 1 114 0 224 323 24 16 chr15 81554536 81554660 -4141094 + MIR SINE MIR 22 146 -62 808 240 87 9 chr15 81556971 81557200 -4138554 - MLT1K LTR MaLR -21 567 321 942 263 76 11 chr15 81558770 81559151 -4136603 - L1M4 LINE L1 -1321 4825 4420 206 297 0 16 chr15 81559615 81559679 -4136075 + CT-rich Low_complexity Low_complexity 1 63 0 528 217 21 122 chr15 81560687 81561023 -4134731 + MER33 DNA MER1_type 21 322 -2 531 315 0 38 chr15 81561244 81561428 -4134326 - MER91B DNA MER1_type -13 177 1 1786 135 3 43 chr15 81563075 81563379 -4132375 + AluSx SINE Alu 1 292 -20 2299 106 0 16 chr15 81563400 81563712 -4132042 + AluSx SINE Alu 1 307 -5 448 231 75 21 chr15 81564738 81564921 -4130833 - MER20B DNA MER1_type -4 779 587 2230 142 4 69 chr15 81564921 81565053 -4130701 + MLT2D LTR ERVL 1 140 -380 2101 132 0 0 chr15 81565053 81565342 -4130412 + AluSq SINE Alu 7 295 -18 2230 142 4 69 chr15 81565342 81565618 -4130136 + MLT2D LTR ERVL 140 486 -34 336 234 18 27 chr15 81565650 81565666 -4130088 + (TA)n Simple_repeat Simple_repeat 1 16 -118 185 0 40 0 chr15 81565666 81565691 -4130063 + (CA)n Simple_repeat Simple_repeat 1 26 0 336 234 18 27 chr15 81565691 81565786 -4129968 + (TA)n Simple_repeat Simple_repeat 16 134 0 298 167 0 0 chr15 81565838 81565886 -4129868 + MLT2D LTR ERVL 367 414 0 5117 133 17 3 chr15 81565909 81567435 -4128319 + L1PA14 LINE L1 4423 5966 -195 1352 105 5 0 chr15 81567570 81567761 -4127993 + L1PA14 LINE L1 5970 6161 0 2288 135 85 49 chr15 81567827 81568382 -4127372 + MER4A LTR ERV1 1 434 -31 7521 196 60 18 chr15 81568396 81570149 -4125605 + L1MD1 LINE L1 5 2101 -4439 2045 139 3 0 chr15 81570149 81570450 -4125304 + AluSx SINE Alu 1 302 -10 7521 196 60 18 chr15 81570450 81570965 -4124789 + L1MD1 LINE L1 2101 2593 -3947 963 84 7 7 chr15 81570973 81571116 -4124638 + L1MCa LINE L1 959 1101 -5325 3600 133 113 12 chr15 81571126 81572125 -4123629 + L1MCa LINE L1 1266 2456 -3970 3255 252 23 20 chr15 81572110 81573208 -4122546 + L1MCa LINE L1 2397 3497 -2929 * 2983 261 31 15 chr15 81573322 81574347 -4121407 + L1MD1 LINE L1 3028 4069 -2471 4672 232 52 16 chr15 81574353 81576342 -4119412 + L1MD1 LINE L1 4193 6252 -384 736 152 192 20 chr15 81576368 81576519 -4119235 - FRAM SINE Alu 0 176 1 1496 170 115 0 chr15 81576519 81576807 -4118947 + L1MD1 LINE L1 6316 6636 0 870 258 36 8 chr15 81576872 81577120 -4118634 - MER20B DNA MER1_type -283 500 246 458 123 29 181 chr15 81577231 81577369 -4118385 + Charlie1 DNA MER1_type 2432 2548 -213 605 310 42 13 chr15 81579438 81579677 -4116077 + Charlie8 DNA MER1_type 1 246 -2171 303 225 28 0 chr15 81579677 81579748 -4116006 + MER5A DNA MER1_type 3 75 -114 2158 96 48 0 chr15 81579751 81580044 -4115710 + AluSc SINE Alu 1 307 -2 2051 171 5 14 chr15 81580044 81580413 -4115341 + L1MA7 LINE L1 5926 6291 0 836 158 115 24 chr15 81580417 81580604 -4115150 + AluSg/x SINE Alu 129 310 0 387 200 60 0 chr15 81580616 81580716 -4115038 + MER5A DNA MER1_type 84 189 0 2130 146 125 10 chr15 81582147 81582531 -4113223 - MSTA LTR MaLR 0 428 1 269 265 71 31 chr15 81582810 81582908 -4112846 + MER91C DNA MER1_type 4 105 -35 467 223 58 0 chr15 81584511 81584614 -4111140 - MIR SINE MIR -75 187 79 1269 102 6 0 chr15 81585067 81585234 -4110520 + AluSq SINE Alu 132 299 -14 219 155 17 35 chr15 81585354 81585412 -4110342 + CT-rich Low_complexity Low_complexity 4 60 0 1899 67 0 13 chr15 81585727 81585965 -4109789 - AluY SINE Alu -76 235 1 1941 184 60 46 chr15 81585966 81586517 -4109237 + L1MDa LINE L1 2122 2677 -3863 659 210 72 43 chr15 81587018 81587109 -4108645 + L1MC5 LINE L1 7634 7721 -240 198 0 0 0 chr15 81587109 81587131 -4108623 + (TA)n Simple_repeat Simple_repeat 2 23 0 659 210 72 43 chr15 81587131 81587188 -4108566 + L1MC5 LINE L1 7721 7775 -186 186 71 0 0 chr15 81587188 81587216 -4108538 + (TG)n Simple_repeat Simple_repeat 1 28 0 659 210 72 43 chr15 81587216 81587342 -4108412 + L1MC5 LINE L1 7775 7917 -44 3384 216 48 31 chr15 81589567 81589890 -4105864 - L1ME1 LINE L1 -17 6543 6227 2095 139 3 3 chr15 81589890 81590200 -4105554 + AluSx SINE Alu 1 310 -2 3384 216 48 31 chr15 81590200 81590756 -4104998 - L1ME1 LINE L1 -333 6227 5649 2058 133 14 3 chr15 81590766 81591060 -4104694 - MER1B DNA MER1_type 0 339 43 2460 239 35 19 chr15 81591060 81591780 -4103974 - L1ME1 LINE L1 -1119 5421 4691 679 190 13 32 chr15 81591780 81591938 -4103816 + MER4C LTR ERV1 1 155 -310 961 161 81 143 chr15 81592047 81592382 -4103372 + MER4C LTR ERV1 149 462 -3 1332 224 42 21 chr15 81592408 81592791 -4102963 - L1ME1 LINE L1 -1872 4668 4278 1176 201 61 64 chr15 81592834 81593088 -4102666 + MLT2C2 LTR ERVL 82 336 -128 4564 159 51 3 chr15 81593088 81593835 -4101919 - LTR39 LTR ERV1 0 783 1 1176 201 61 64 chr15 81593835 81593924 -4101830 + MLT2C2 LTR ERVL 336 424 -40 25455 186 29 25 chr15 81593953 81596598 -4099156 + ERVL LTR ERVL 172 2804 -2960 2506 77 0 0 chr15 81596598 81596897 -4098857 + AluY SINE Alu 1 299 -12 25455 186 29 25 chr15 81596897 81599544 -4096210 + ERVL LTR ERVL 2804 5535 -229 4331 211 23 26 chr15 81599544 81601065 -4094689 - MER52A LTR ERV1 0 1755 8 757 186 23 0 chr15 81601085 81601214 -4094540 + ERVL LTR ERVL 5528 5659 -105 316 194 15 30 chr15 81601215 81601282 -4094472 + Ricksha DNA DNA 305 370 -884 919 241 38 45 chr15 81601282 81601572 -4094182 + MLT2D LTR ERVL 79 366 -48 235 159 63 0 chr15 81601572 81601635 -4094119 + CT-rich Low_complexity Low_complexity 1 67 0 229 185 56 0 chr15 81601635 81601689 -4094065 + MLT2D LTR ERVL 408 464 0 4827 236 30 20 chr15 81601690 81603120 -4092634 - L1ME1 LINE L1 -2273 4267 2823 286 202 12 12 chr15 81604755 81604839 -4090915 + GA-rich Low_complexity Low_complexity 1 84 0 899 370 88 35 chr15 81608426 81609276 -4086478 - L1 LINE L1 -1331 4815 4012 2560 78 0 0 chr15 81609276 81609583 -4086171 - AluY SINE Alu -2 309 3 899 370 88 35 chr15 81609583 81610306 -4085448 - L1 LINE L1 -2134 4012 3129 699 278 43 23 chr15 81610318 81610663 -4085091 - L1 LINE L1 -3097 3049 2698 327 301 79 49 chr15 81610688 81610891 -4084863 - L1 LINE L1 -3594 2552 2344 955 221 50 32 chr15 81610891 81611230 -4084524 - L1M4 LINE L1 -776 5370 5026 2261 99 0 10 chr15 81611244 81611538 -4084216 - AluSc SINE Alu -18 291 1 3761 258 74 21 chr15 81611812 81613395 -4082359 - L1M4 LINE L1 -2325 3821 2155 1682 218 84 70 chr15 81613396 81613942 -4081812 + MLT2B3 LTR ERVL 1 554 0 7263 118 10 40 chr15 81613946 81615127 -4080627 + THE1-int LTR MaLR 6 1151 -429 1240 269 123 16 chr15 81615127 81615878 -4079876 - L1ME1 LINE L1 -4141 2399 1569 4144 182 33 24 chr15 81615932 81616449 -4079305 - L1MB3 LINE L1 -54 6129 5618 2337 104 0 3 chr15 81616449 81616747 -4079007 - AluSq SINE Alu -16 297 1 4144 182 33 24 chr15 81616747 81617294 -4078460 - L1MB3 LINE L1 -565 5618 5047 2031 60 8 0 chr15 81617308 81617556 -4078198 - AluY SINE Alu -61 250 1 2376 162 50 8 chr15 81617556 81618002 -4077752 - L1MB3 LINE L1 -45 6138 5670 191 289 0 0 chr15 81618304 81618349 -4077405 - MIR SINE MIR -113 149 105 206 286 52 26 chr15 81618600 81618677 -4077077 + MIR SINE MIR 108 186 -76 2668 43 0 0 chr15 81618766 81619067 -4076687 - AluY SINE Alu -10 301 1 424 276 105 22 chr15 81620264 81620445 -4075309 + MER91A DNA MER1_type 1 196 0 212 333 9 9 chr15 81620857 81620968 -4074786 - MIR SINE MIR -117 145 35 284 361 51 13 chr15 81621403 81621561 -4074193 - MER5B DNA MER1_type -10 168 5 1915 199 26 3 chr15 81621824 81622205 -4073549 - MLT1B LTR MaLR 0 390 1 797 177 0 3 chr15 81622277 81622673 -4073081 + (CA)n Simple_repeat Simple_repeat 1 394 0 221 275 58 25 chr15 81622920 81623040 -4072714 + MIR SINE MIR 6 129 -133 322 296 42 21 chr15 81624025 81624167 -4071587 - L1ME LINE L1 -391 5771 5627 260 373 0 3 chr15 81625160 81625312 -4070442 - MIR SINE MIR -59 149 33 732 186 116 133 chr15 81625380 81625524 -4070230 + MER34B LTR ERV1 1 146 -419 2070 139 0 10 chr15 81625524 81625826 -4069928 - AluSg SINE Alu -11 299 1 732 186 116 133 chr15 81625826 81626034 -4069720 + MER34B LTR ERV1 146 342 -223 2281 103 0 0 chr15 81626034 81626324 -4069430 - AluSg SINE Alu -14 296 7 732 186 116 133 chr15 81626324 81626541 -4069213 + MER34B LTR ERV1 342 561 -4 293 312 130 13 chr15 81626910 81627064 -4068690 + MIR SINE MIR 18 189 -73 217 288 15 0 chr15 81627131 81627197 -4068557 + MIR SINE MIR 79 145 -63 201 319 14 0 chr15 81627207 81627276 -4068478 + MIR SINE MIR 115 184 -78 255 317 29 19 chr15 81627724 81627828 -4067926 - MIR SINE MIR -61 147 43 789 253 78 83 chr15 81628827 81629169 -4066585 + MLT1J2 LTR MaLR 45 387 -63 1347 190 44 47 chr15 81629169 81629263 -4066491 + MER58B DNA MER1_type 1 94 -2326 182 33 67 0 chr15 81629263 81629293 -4066461 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2354 87 0 0 chr15 81629295 81629583 -4066171 - AluSg SINE Alu -22 288 1 1347 190 44 47 chr15 81629583 81629827 -4065927 + MER58B DNA MER1_type 95 341 0 789 253 78 83 chr15 81629827 81629892 -4065862 + MLT1J2 LTR MaLR 387 450 0 2359 108 0 0 chr15 81629912 81630207 -4065547 - AluSx SINE Alu -17 295 1 313 303 25 16 chr15 81630210 81630332 -4065422 - L1ME LINE L1 -509 5612 5490 245 346 12 0 chr15 81631088 81631169 -4064585 - MER63 DNA MER1_type -2 1059 978 586 161 85 25 chr15 81631170 81631288 -4064466 - MER63 DNA MER1_type -85 751 1 400 219 0 12 chr15 81631421 81631503 -4064251 - MIR SINE MIR -143 119 39 317 286 34 54 chr15 81631658 81631805 -4063949 + MARNA DNA Mariner 295 438 -148 324 0 0 0 chr15 81633095 81633131 -4062623 + (CA)n Simple_repeat Simple_repeat 1 36 0 749 315 126 23 chr15 81635167 81635860 -4059894 + L2 LINE L2 1611 2374 -940 463 261 103 42 chr15 81636386 81636551 -4059203 + MLT1K LTR MaLR 414 588 0 240 111 0 0 chr15 81636555 81636591 -4059163 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 208 333 0 0 chr15 81637198 81637255 -4058499 - MIR SINE MIR -103 105 49 296 274 62 18 chr15 81637444 81637557 -4058197 - MER5C DNA MER1_type -200 124 7 228 149 0 21 chr15 81637965 81638012 -4057742 - L2 LINE L2 0 3272 3227 311 323 161 9 chr15 81638568 81638785 -4056969 + MIR SINE MIR 13 262 0 2232 99 3 0 chr15 81640823 81641115 -4054639 + AluSc SINE Alu 1 293 -16 317 256 0 0 chr15 81642641 81642723 -4053031 + (TGG)n Simple_repeat Simple_repeat 2 83 0 310 269 77 8 chr15 81642962 81643092 -4052662 + L2 LINE L2 2213 2351 -963 6913 42 15 1 chr15 81643193 81644629 -4051125 + L1PA6 LINE L1 4702 6149 -5 2534 131 26 0 chr15 81644714 81645135 -4050619 + L1MA8 LINE L1 5508 5939 -352 1574 175 21 18 chr15 81645144 81645429 -4050325 + AluJb SINE Alu 1 286 -26 615 189 0 0 chr15 81645553 81645991 -4049763 + (CCA)n Simple_repeat Simple_repeat 1 438 0 664 243 1 0 chr15 81646003 81646880 -4048874 + (CCA)n Simple_repeat Simple_repeat 1 878 0 407 200 0 8 chr15 81646904 81647029 -4048725 + (CCA)n Simple_repeat Simple_repeat 3 126 0 180 111 0 0 chr15 81647054 81647081 -4048673 + (CA)n Simple_repeat Simple_repeat 1 27 0 313 269 28 0 chr15 81647318 81647426 -4048328 + MER103 DNA DNA 20 130 -36 602 331 60 43 chr15 81647812 81648432 -4047322 + L2 LINE L2 1797 2426 -888 1877 163 28 0 chr15 81648550 81648838 -4046916 + AluJb SINE Alu 1 296 -16 3385 177 23 0 chr15 81648839 81649493 -4046261 - L1MB1 LINE L1 -115 6053 5385 250 304 20 20 chr15 81649494 81649596 -4046158 + L2 LINE L2 2543 2644 -670 2210 174 44 21 chr15 81649722 81650154 -4045600 - MLT1C LTR MaLR -4 463 22 184 389 24 18 chr15 81651943 81652110 -4043644 + L2 LINE L2 2868 3035 -237 352 309 115 0 chr15 81652245 81652410 -4043344 - MER5A DNA MER1_type -5 184 1 531 260 272 9 chr15 81653012 81653354 -4042400 - L2 LINE L2 -406 2908 2477 290 94 19 75 chr15 81653359 81653412 -4042342 + MLT1K LTR MaLR 532 581 -7 503 312 84 4 chr15 81653818 81654068 -4041686 + MLT1I LTR MaLR 71 340 -69 507 342 98 31 chr15 81654335 81654782 -4040972 + L1M4 LINE L1 4357 4833 -1313 2133 141 13 3 chr15 81655140 81655445 -4040309 - AluSx SINE Alu -4 308 1 675 303 96 55 chr15 81655790 81655865 -4039889 + L1ME4a LINE L1 4308 4379 -1767 2254 127 3 0 chr15 81655865 81656164 -4039590 - AluSx SINE Alu -12 300 1 675 303 96 55 chr15 81656164 81656696 -4039058 + L1ME4a LINE L1 4379 4971 -1175 1634 176 3 23 chr15 81656696 81656998 -4038756 + AluJb SINE Alu 1 296 -16 675 303 96 55 chr15 81656998 81657415 -4038339 + L1ME4a LINE L1 4971 5370 -776 443 351 39 22 chr15 81657423 81657937 -4037817 + L1ME4a LINE L1 5412 5937 -184 216 0 0 0 chr15 81657937 81657961 -4037793 + (TC)n Simple_repeat Simple_repeat 2 25 0 443 351 39 22 chr15 81657961 81657988 -4037766 + L1ME4a LINE L1 5937 5962 -159 31 44 0 0 chr15 81658210 81658255 -4037499 + AT_rich Low_complexity Low_complexity 1 45 0 389 239 22 22 chr15 81658272 81658364 -4037390 - Tigger6 DNA MER2_type -3 1594 1503 351 310 105 39 chr15 81658683 81658912 -4036842 - L1M4 LINE L1 -1318 4828 4585 228 224 95 64 chr15 81658922 81659186 -4036568 - L1M4 LINE L1 -1594 4552 4281 24 0 0 0 chr15 81659265 81659289 -4036465 + AT_rich Low_complexity Low_complexity 1 24 0 1186 254 37 103 chr15 81659289 81660131 -4035623 - HAL1 LINE L1 0 2507 1722 225 309 21 21 chr15 81660376 81660470 -4035284 + L1MEd LINE L1 1 94 -6025 1219 286 54 45 chr15 81660878 81661617 -4034137 + L1MEd LINE L1 459 1204 -4915 189 147 0 0 chr15 81662615 81662649 -4033105 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 548 242 135 6 chr15 81662963 81663157 -4032597 + MER20B DNA MER1_type 2 219 0 560 283 35 57 chr15 81663397 81663627 -4032127 + MIR SINE MIR 28 252 -10 2001 127 111 0 chr15 81664789 81665105 -4030649 - MER47A DNA MER2_type 0 366 16 21 36 0 0 chr15 81666483 81666511 -4029243 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 81667352 81667372 -4028382 + (TG)n Simple_repeat Simple_repeat 2 21 0 252 281 66 25 chr15 81667675 81667796 -4027958 - MIR SINE MIR -123 139 14 183 80 0 0 chr15 81668728 81668753 -4027001 + (TC)n Simple_repeat Simple_repeat 1 25 0 259 231 19 67 chr15 81670409 81670513 -4025241 + MLT1J1 LTR MaLR 63 161 -285 2246 95 0 16 chr15 81670918 81671235 -4024519 - AluSx SINE Alu 0 312 1 2251 94 0 0 chr15 81671622 81671920 -4023834 + AluSp SINE Alu 1 298 -15 4754 91 14 16 chr15 81672189 81672880 -4022874 + L1PA13 LINE L1 5470 6159 -4 267 86 0 0 chr15 81672880 81672915 -4022839 + L1PA15 LINE L1 6118 6152 -13 3507 166 51 28 chr15 81674509 81675218 -4020536 + LTR8A LTR ERV1 3 727 0 303 318 140 63 chr15 81675785 81676100 -4019654 - L2 LINE L2 -51 3221 2883 1903 118 0 14 chr15 81676154 81676434 -4019320 + AluSx SINE Alu 11 286 -26 401 150 30 50 chr15 81676553 81676653 -4019101 - MER104 DNA Tc2 -77 103 6 2082 113 3 26 chr15 81676867 81677176 -4018578 + AluSg SINE Alu 1 302 -8 23640 91 17 11 chr15 81677185 81680531 -4015223 + L1P LINE L1 11 3375 -2771 14943 66 1 1 chr15 81680642 81682559 -4013195 + L1P LINE L1 3181 5097 -1049 1364 196 30 27 chr15 81682706 81683043 -4012711 + L1MA7 LINE L1 5954 6291 0 285 252 57 41 chr15 81683295 81683418 -4012336 + MER104 DNA Tc2 26 150 -30 229 308 31 20 chr15 81683915 81684025 -4011729 - MIR SINE MIR -76 132 34 1944 190 35 37 chr15 81684766 81684939 -4010815 + MLT1C LTR MaLR 5 177 -290 2191 92 0 0 chr15 81684939 81685278 -4010476 + AluY SINE Alu 1 311 0 1944 190 35 37 chr15 81685278 81685567 -4010187 + MLT1C LTR MaLR 177 466 -1 493 265 34 7 chr15 81686638 81686785 -4008969 + MIR SINE MIR 33 183 -79 216 0 0 0 chr15 81686814 81686838 -4008916 + (CA)n Simple_repeat Simple_repeat 1 24 0 387 220 92 52 chr15 81687806 81687979 -4007775 + L1MC5 LINE L1 7268 7447 -514 322 245 124 73 chr15 81688032 81688265 -4007489 + L1MC4 LINE L1 7600 7844 -198 207 0 0 0 chr15 81688285 81688308 -4007446 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1107 233 76 0 chr15 81688311 81688573 -4007181 - AluJo SINE Alu -30 282 1 456 121 15 0 chr15 81688930 81688996 -4006758 + AluJ/FLAM SINE Alu 2 68 -244 2045 112 0 3 chr15 81689158 81689444 -4006310 + AluSc SINE Alu 3 287 -22 189 0 0 0 chr15 81689447 81689468 -4006286 + (TA)n Simple_repeat Simple_repeat 1 21 0 386 265 179 24 chr15 81689497 81689932 -4005822 - L2 LINE L2 -2 3270 2696 180 77 0 0 chr15 81690384 81690410 -4005344 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 278 372 31 8 chr15 81690417 81690546 -4005208 - L2 LINE L2 -17 3296 3165 454 115 13 0 chr15 81693308 81693386 -4002368 + L1MA10 LINE L1 6248 6326 -8 1727 141 11 11 chr15 81693395 81693678 -4002076 - AluSq SINE Alu -29 284 2 209 200 0 0 chr15 81694453 81694493 -4001261 + T-rich Low_complexity Low_complexity 5 44 0 192 143 57 0 chr15 81694517 81694552 -4001202 + MER5A DNA MER1_type 1 37 -152 559 210 38 108 chr15 81694580 81694655 -4001099 + MER5A DNA MER1_type 1 80 -109 1856 130 7 27 chr15 81694655 81694954 -4000800 - AluSx SINE Alu -17 295 3 559 210 38 108 chr15 81694954 81695064 -4000690 + MER5A DNA MER1_type 80 173 -16 180 254 32 48 chr15 81695352 81695415 -4000339 + L2 LINE L2 3246 3307 -6 1947 92 7 10 chr15 81695916 81696208 -3999546 - AluSx SINE Alu -21 291 1 796 98 15 0 chr15 81697144 81697277 -3998477 + (CA)n Simple_repeat Simple_repeat 2 136 0 2107 111 0 3 chr15 81698157 81698454 -3997300 - AluSx SINE Alu -15 297 2 2095 106 0 10 chr15 81699780 81700083 -3995671 + AluSx SINE Alu 1 300 -12 992 226 114 10 chr15 81700958 81701255 -3994499 + L1ME1 LINE L1 5809 6136 -30 306 269 0 43 chr15 81701549 81701642 -3994112 - L1M4 LINE L1 -1697 4449 4361 201 121 0 0 chr15 81702564 81702597 -3993157 + (TG)n Simple_repeat Simple_repeat 2 34 0 279 331 58 33 chr15 81703073 81703194 -3992560 - L2 LINE L2 -15 3257 3134 185 255 39 0 chr15 81703293 81703344 -3992410 - L2 LINE L2 -266 3047 2995 359 227 27 13 chr15 81703648 81703723 -3992031 + Charlie1 DNA MER1_type 6 81 -2680 1033 185 89 37 chr15 81705370 81705695 -3990059 + Charlie1 DNA MER1_type 2413 2754 -7 548 118 194 0 chr15 81705912 81706005 -3989749 + HY1 scRNA scRNA 1 111 -1 1920 86 0 4 chr15 81706227 81706484 -3989270 - L1PA8 LINE L1 -5 6167 5912 423 300 132 30 chr15 81706811 81707181 -3988573 + L2 LINE L2 1640 2047 -1267 6448 146 39 29 chr15 81707313 81707475 -3988279 - L1M1 LINE L1 -743 5403 5244 2303 94 0 13 chr15 81707475 81707774 -3987980 - AluSq SINE Alu -18 295 1 6448 146 39 29 chr15 81707774 81708966 -3986788 - L1M1 LINE L1 -902 5244 4118 532 224 38 55 chr15 81708953 81709190 -3986564 - L1MEc LINE L1 -2817 3398 3166 * 239 241 0 0 chr15 81709233 81709287 -3986467 - L1MEc LINE L1 -4452 1944 1891 23 68 0 0 chr15 81709648 81709692 -3986062 + AT_rich Low_complexity Low_complexity 1 44 0 2104 140 7 0 chr15 81710342 81710650 -3985104 - AluSx SINE Alu -2 310 1 201 239 14 42 chr15 81711353 81711424 -3984330 + CT-rich Low_complexity Low_complexity 4 72 0 703 265 117 14 chr15 81712001 81712224 -3983530 - MIR SINE MIR -13 249 4 240 284 95 0 chr15 81712456 81712530 -3983224 - MLT-int LTR MaLR -1193 542 462 1219 261 222 10 chr15 81712827 81712960 -3982794 - MLT1G1 LTR MaLR -5 590 486 2174 122 3 0 chr15 81712960 81713271 -3982483 + AluSx SINE Alu 1 312 0 1219 261 222 10 chr15 81713271 81713624 -3982130 - MLT1G1 LTR MaLR -109 486 1 234 0 0 0 chr15 81713683 81713709 -3982045 + (T)n Simple_repeat Simple_repeat 1 26 0 2208 108 14 0 chr15 81714753 81715050 -3980704 + AluSx SINE Alu 1 301 -11 823 174 7 27 chr15 81717283 81717432 -3978322 - MER2 DNA MER2_type -199 146 1 430 183 275 38 chr15 81717432 81717560 -3978194 + MER3 DNA MER1_type 51 209 0 299 256 173 0 chr15 81717930 81718063 -3977691 + L2 LINE L2 2366 2521 -793 334 302 61 7 chr15 81718464 81718656 -3977098 + MIR SINE MIR 19 258 -4 323 266 13 0 chr15 81718704 81718783 -3976971 + L2 LINE L2 3230 3309 -4 257 0 30 0 chr15 81718855 81718888 -3976866 + (CA)n Simple_repeat Simple_repeat 1 34 0 2270 117 7 0 chr15 81719086 81719394 -3976360 + AluSx SINE Alu 1 310 -2 645 150 0 0 chr15 81719425 81719525 -3976229 + FRAM SINE Alu 44 143 -33 675 349 128 22 chr15 81720101 81720657 -3975097 - L2 LINE L2 -453 2861 2247 403 231 200 31 chr15 81720959 81721279 -3974475 + L1ME LINE L1 4942 5315 -831 589 239 153 28 chr15 81721402 81721657 -3974097 + L1ME LINE L1 5514 5800 -321 851 157 14 7 chr15 81722093 81722240 -3973514 + L1MB8 LINE L1 6029 6176 -2 597 227 8 17 chr15 81722254 81722373 -3973381 - Tigger3(Golem) DNA MER2_type 0 3038 2921 22 0 0 0 chr15 81724897 81724919 -3970835 + AT_rich Low_complexity Low_complexity 1 22 0 309 316 81 23 chr15 81725368 81725563 -3970191 - MIR SINE MIR -44 218 16 334 264 39 77 chr15 81725566 81725721 -3970033 + MIR3 SINE MIR 38 186 -22 556 188 144 44 chr15 81726117 81726277 -3969477 - MIR SINE MIR -1 261 86 532 213 41 0 chr15 81726294 81726416 -3969338 - Charlie1 DNA MER1_type 0 2761 2635 195 250 36 98 chr15 81727609 81727721 -3968033 - MIR3 SINE MIR -30 178 74 3266 245 45 28 chr15 81727924 81729047 -3966707 + L1MCc LINE L1 11 1500 -4963 2017 127 0 0 chr15 81729456 81729762 -3965992 - AluSx SINE Alu 0 306 1 467 132 13 0 chr15 81730430 81730506 -3965248 + MER96 DNA MER1_type? 97 173 -2 476 80 34 11 chr15 81730577 81730665 -3965089 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 2260 120 7 0 chr15 81730681 81730989 -3964765 - AluSq SINE Alu -3 310 1 788 238 108 0 chr15 81732471 81732656 -3963098 - MIR SINE MIR -45 217 13 847 236 30 5 chr15 81732906 81733109 -3962645 - MER3 DNA MER1_type 0 209 2 1639 127 13 4 chr15 81733648 81733876 -3961878 - MER30 DNA MER1_type 0 230 1 941 176 33 11 chr15 81733915 81734097 -3961657 + MER58A DNA MER1_type 39 224 0 2070 142 7 3 chr15 81734218 81734528 -3961226 - AluSq SINE Alu -2 311 1 510 173 0 0 chr15 81736479 81736560 -3959194 + FRAM/FAM SINE Alu 1 79 -97 876 144 0 0 chr15 81736560 81736699 -3959055 + AluJo/FRAM SINE Alu 162 300 -12 2171 138 0 0 chr15 81736739 81737037 -3958717 + AluSx SINE Alu 1 298 -14 1984 133 0 35 chr15 81737165 81737480 -3958274 + AluJb SINE Alu 1 304 -8 2493 51 0 3 chr15 81738012 81738306 -3957448 - AluY SINE Alu -18 293 1 23 68 0 0 chr15 81739782 81739826 -3955928 + AT_rich Low_complexity Low_complexity 1 44 0 1131 213 80 0 chr15 81739905 81740191 -3955563 + L1MC3 LINE L1 6812 7120 -665 534 206 95 0 chr15 81740188 81740314 -3955440 + L1MC3 LINE L1 7646 7783 -2 * 2480 74 0 0 chr15 81741348 81741646 -3954108 - AluSc SINE Alu -11 298 1 262 242 61 0 chr15 81746780 81746846 -3948908 - L2 LINE L2 -18 3295 3226 1370 182 108 30 chr15 81746963 81747328 -3948426 + MSTC LTR MaLR 1 396 0 705 279 24 79 chr15 81747331 81747644 -3948110 - L2 LINE L2 -261 3052 2755 180 0 0 0 chr15 81747944 81747964 -3947790 + (T)n Simple_repeat Simple_repeat 1 20 0 1355 221 170 14 chr15 81748022 81748430 -3947324 + LTR54B LTR ERV1 1 480 -18 2228 116 0 0 chr15 81748430 81748732 -3947022 - AluSx SINE Alu -10 302 1 1355 221 170 14 chr15 81748732 81748752 -3947002 + LTR54B LTR ERV1 480 496 -2 223 256 40 88 chr15 81749467 81749592 -3946162 - MER5B DNA MER1_type -59 119 1 22 0 0 0 chr15 81750101 81750123 -3945631 + AT_rich Low_complexity Low_complexity 1 22 0 269 240 173 0 chr15 81750246 81750321 -3945433 - L2 LINE L2 -4 3309 3222 573 165 65 10 chr15 81751015 81751154 -3944600 + MER5A DNA MER1_type 1 186 -3 367 299 67 63 chr15 81751316 81751600 -3944154 - MER41E LTR ERV1 -62 450 166 1011 145 34 28 chr15 81751788 81751967 -3943787 - LTR9 LTR ERV1 -432 180 1 523 268 77 1 chr15 81752153 81752295 -3943459 + MER5A DNA MER1_type 27 189 0 227 271 135 0 chr15 81752297 81752393 -3943361 - LTR33 LTR ERVL -99 422 314 1064 202 88 4 chr15 81752899 81753137 -3942617 - L1MC/D LINE L1 -644 5598 5341 1425 164 0 21 chr15 81753243 81753481 -3942273 - MER2 DNA MER2_type -112 233 1 226 314 163 0 chr15 81753481 81753555 -3942199 + MER20B DNA MER1_type 360 447 -336 1820 158 74 16 chr15 81753650 81753973 -3941781 - MER2 DNA MER2_type -1 343 2 590 235 235 31 chr15 81754257 81754453 -3941301 + MIR SINE MIR 13 248 -14 223 288 122 14 chr15 81754732 81754871 -3940883 - L3 LINE CR1 -359 1218 1065 1316 147 13 36 chr15 81755378 81755602 -3940152 + MER20 DNA MER1_type 1 219 0 830 183 0 0 chr15 81756606 81756732 -3939022 - FLAM_C SINE Alu -12 131 6 377 172 164 15 chr15 81757201 81757335 -3938419 - L1ME4a LINE L1 -4 6117 5964 306 260 19 10 chr15 81757345 81757449 -3938305 + L1M4 LINE L1 4092 4196 -1950 30 27 0 0 chr15 81757598 81757635 -3938119 + AT_rich Low_complexity Low_complexity 1 37 0 3968 36 0 0 chr15 81757635 81758076 -3937678 - L1PA5 LINE L1 -8 6146 5706 869 189 52 33 chr15 81758238 81758450 -3937304 + MER21B LTR ERV1 100 315 -548 2133 77 34 125 chr15 81758450 81758865 -3936889 - MER51B LTR ERV1 0 377 1 12944 107 41 27 chr15 81758866 81759253 -3936501 - MER51B-int LTR ERV1 0 7816 7436 195 42 0 0 chr15 81759253 81759277 -3936477 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 12944 107 41 27 chr15 81759277 81759597 -3936157 - MER51B-int LTR ERV1 -380 7436 7122 2216 118 7 0 chr15 81759597 81759901 -3935853 - AluSq SINE Alu -7 306 1 12944 107 41 27 chr15 81759901 81761507 -3934247 - MER51B-int LTR ERV1 -694 7122 5249 254 0 0 0 chr15 81761506 81761536 -3934218 - MER51-int LTR ERV1 -2303 5513 5484 * 17072 145 61 54 chr15 81761532 81763618 -3932136 - MER51-int LTR ERV1 -3237 4579 2446 2335 99 3 0 chr15 81763618 81763921 -3931833 - AluSc SINE Alu -5 304 1 17072 145 61 54 chr15 81763921 81765865 -3929889 - MER51-int LTR ERV1 -5370 2446 518 1318 191 120 37 chr15 81765871 81766196 -3929558 + MER21B LTR ERV1 501 852 -11 310 164 49 16 chr15 81766405 81766466 -3929288 - MER116 DNA Mariner -3 77 15 271 175 88 0 chr15 81766728 81766785 -3928969 - MER92C LTR ERV1 0 554 493 351 203 29 0 chr15 81766978 81767047 -3928707 - MER92C LTR ERV1 0 554 484 347 296 43 43 chr15 81767100 81767262 -3928492 - MER92C LTR ERV1 -392 162 1 234 318 86 12 chr15 81767466 81767657 -3928097 - L1ME LINE L1 -265 5901 5695 282 106 0 0 chr15 81767666 81767713 -3928041 + (GA)n Simple_repeat Simple_repeat 1 47 0 2701 231 120 4 chr15 81767715 81768803 -3926951 - L1ME LINE L1 -490 5674 4458 396 0 0 0 chr15 81770627 81770671 -3925083 + (CA)n Simple_repeat Simple_repeat 1 44 0 25823 38 2 1 chr15 81775536 81779091 -3916663 - L1PA5 LINE L1 -323 5831 2273 2153 116 3 0 chr15 81779666 81779974 -3915780 - AluSx SINE Alu 0 309 1 21 57 0 0 chr15 81781053 81781088 -3914666 + AT_rich Low_complexity Low_complexity 1 35 0 235 253 0 38 chr15 81781088 81781167 -3914587 - AluJb SINE Alu -48 254 179 372 156 5 71 chr15 81781167 81781261 -3914493 + AluJb SINE Alu 203 280 -22 199 54 54 0 chr15 81781261 81781298 -3914456 + GA-rich Low_complexity Low_complexity 2 40 0 360 202 266 0 chr15 81781383 81781477 -3914277 - AluJb SINE Alu -8 294 176 254 313 0 0 chr15 81782119 81782183 -3913571 + MIR SINE MIR 83 146 -62 476 221 91 53 chr15 81783552 81783760 -3911994 - MLT1K LTR MaLR 0 588 373 713 248 79 53 chr15 81783808 81784074 -3911680 - MLT1K LTR MaLR -311 277 5 2341 86 10 3 chr15 81785253 81785556 -3910198 - AluSx SINE Alu -7 305 1 1034 211 124 25 chr15 81785717 81786073 -3909681 - MLT1C LTR MaLR -12 455 65 1949 148 33 21 chr15 81787058 81787395 -3908359 + MER7A DNA MER2_type 8 346 0 823 227 67 21 chr15 81787900 81788138 -3907616 - L1ME3A LINE L1 -30 6140 5892 2264 99 0 3 chr15 81788190 81788482 -3907272 + AluSq SINE Alu 1 291 -22 190 317 85 12 chr15 81788919 81789001 -3906753 - L2 LINE L2 -71 3201 3114 * 408 267 225 26 chr15 81788991 81789084 -3906670 - MIR SINE MIR 0 262 189 312 27 0 0 chr15 81789084 81789121 -3906633 + (TTA)n Simple_repeat Simple_repeat 2 38 0 408 267 225 26 chr15 81789121 81789218 -3906536 - MIR SINE MIR -73 189 34 2734 257 129 21 chr15 81789665 81789726 -3906028 + HAL1 LINE L1 112 165 -2342 4285 104 62 21 chr15 81789726 81790389 -3905365 - LTR8 LTR ERV1 -1 690 1 2734 257 129 21 chr15 81790389 81791146 -3904608 + HAL1 LINE L1 165 1083 -1424 1611 145 57 57 chr15 81791146 81791442 -3904312 + AluJo SINE Alu 1 296 -16 2734 257 129 21 chr15 81791442 81791726 -3904028 + HAL1 LINE L1 1083 1335 -1172 746 182 8 0 chr15 81793069 81793190 -3902564 - FLAM_A SINE Alu -11 122 1 1807 125 4 0 chr15 81793340 81793588 -3902166 - AluSp SINE Alu -64 249 1 760 124 0 0 chr15 81793607 81793712 -3902042 + U6 snRNA snRNA 2 106 -1 2101 129 0 20 chr15 81794160 81794462 -3901292 - AluSx SINE Alu -16 296 1 396 0 0 0 chr15 81798456 81798500 -3897254 + (TG)n Simple_repeat Simple_repeat 1 44 0 228 163 0 0 chr15 81799185 81799228 -3896526 + (TG)n Simple_repeat Simple_repeat 2 44 0 1897 148 0 16 chr15 81799611 81799914 -3895840 + AluJb SINE Alu 1 298 -14 877 153 0 0 chr15 81799995 81800126 -3895628 + FLAM_C SINE Alu 2 132 -1 569 179 19 9 chr15 81800441 81800547 -3895207 + U6 snRNA snRNA 1 107 0 9162 41 6 1 chr15 81800855 81801921 -3893833 - MER11C LTR ERVK 0 1071 1 1902 148 14 3 chr15 81802230 81802527 -3893227 + AluSx SINE Alu 1 300 -12 2102 131 10 0 chr15 81804817 81805108 -3890646 - AluSx SINE Alu -18 294 1 1617 180 17 17 chr15 81805128 81805428 -3890326 - AluJo SINE Alu -10 302 3 365 240 30 10 chr15 81805898 81805998 -3889756 + LTR33 LTR ERVL 381 482 -39 4327 211 21 22 chr15 81806060 81807064 -3888690 + L1PA15-16 LINE L1 1901 2903 -3946 2330 86 7 3 chr15 81807869 81808172 -3887582 - AluSp SINE Alu -9 304 1 2602 62 7 0 chr15 81808182 81808491 -3887263 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 81809205 81809235 -3886519 + AT_rich Low_complexity Low_complexity 1 30 0 1854 120 45 0 chr15 81810601 81810911 -3884843 + AluSc SINE Alu 1 322 0 195 296 20 51 chr15 81810923 81811021 -3884733 - MIR3 SINE MIR -111 97 3 493 152 0 0 chr15 81811034 81811113 -3884641 - AluJ/FRAM SINE Alu -13 299 221 241 224 0 17 chr15 81811701 81811759 -3883995 + G-rich Low_complexity Low_complexity 4 60 0 2266 99 10 0 chr15 81812536 81812840 -3882914 + AluSq SINE Alu 1 307 -6 247 47 0 47 chr15 81812840 81812883 -3882871 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 2122 134 7 0 chr15 81813157 81813455 -3882299 + AluSx SINE Alu 4 303 -9 254 215 32 65 chr15 81813463 81813556 -3882198 - MER112 DNA MER1_type -105 155 66 210 245 0 0 chr15 81813556 81813605 -3882149 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 1954 98 0 0 chr15 81814883 81815127 -3880627 - AluSx SINE Alu -19 293 50 257 294 130 0 chr15 81815334 81815426 -3880328 + L2 LINE L2 3168 3271 -1 2223 112 0 3 chr15 81815809 81816103 -3879651 - AluSx SINE Alu -17 295 3 2038 150 24 34 chr15 81816626 81817005 -3878749 + THE1C LTR MaLR 1 375 0 10759 113 10 30 chr15 81817005 81818617 -3877137 + THE1C-int LTR MaLR 1 1579 -1 2125 134 64 19 chr15 81818617 81818976 -3876778 + THE1C LTR MaLR 1 375 0 1989 171 0 0 chr15 81819781 81820086 -3875668 + AluJb SINE Alu 1 305 -7 234 220 0 0 chr15 81820976 81821026 -3874728 + L2 LINE L2 3264 3313 0 25 0 0 0 chr15 81821157 81821182 -3874572 + AT_rich Low_complexity Low_complexity 1 25 0 1568 283 78 90 chr15 81821191 81821856 -3873898 - MER4A LTR ERV1 -7 657 1 720 235 21 5 chr15 81821888 81822075 -3873679 - MIR SINE MIR 0 262 73 2207 95 20 7 chr15 81822486 81822781 -3872973 + AluSg SINE Alu 1 299 -11 219 129 0 0 chr15 81822783 81822814 -3872940 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 296 62 0 42 chr15 81822816 81822864 -3872890 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 483 256 122 6 chr15 81822960 81823124 -3872630 - L2 LINE L2 -23 3290 3108 1595 184 26 0 chr15 81823592 81823859 -3871895 - AluJb SINE Alu -37 275 2 2283 109 0 6 chr15 81825230 81825543 -3870211 - AluSx SINE Alu -1 311 1 297 311 51 81 chr15 81828948 81829033 -3866721 + MIR SINE MIR 21 107 -155 1886 157 0 10 chr15 81829033 81829332 -3866422 - AluSx SINE Alu -16 296 1 297 311 51 81 chr15 81829332 81829481 -3866273 + MIR SINE MIR 107 248 -14 327 171 26 13 chr15 81829537 81829613 -3866141 - L2 LINE L2 -49 3264 3188 315 0 0 0 chr15 81829830 81829865 -3865889 + (CA)n Simple_repeat Simple_repeat 2 36 0 604 262 116 13 chr15 81832006 81832231 -3863523 + MER112 DNA MER1_type 1 248 -12 307 216 108 0 chr15 81832456 81832530 -3863224 - MER3 DNA MER1_type 0 209 128 297 167 0 17 chr15 81832511 81832571 -3863183 + MER3 DNA MER1_type 2527 2585 0 * 1471 249 23 46 chr15 81832575 81832619 -3863135 + L1ME LINE L1 5043 5087 -1083 2380 102 0 0 chr15 81832619 81832923 -3862831 - AluY SINE Alu -6 305 2 1471 249 23 46 chr15 81832923 81833510 -3862244 + L1ME LINE L1 5087 5651 -519 382 209 70 62 chr15 81833776 81833905 -3861849 - Charlie8 DNA MER1_type -2233 184 55 250 280 130 0 chr15 81834706 81834806 -3860948 + MIR SINE MIR 81 193 -69 379 115 0 0 chr15 81835453 81835505 -3860249 - Zaphod DNA AcHobo 0 4031 3980 939 290 86 24 chr15 81835529 81835912 -3859842 - MER115 DNA AcHobo -264 429 23 2348 79 10 0 chr15 81836633 81836924 -3858830 - AluSg SINE Alu -16 294 1 23 0 0 0 chr15 81837259 81837282 -3858472 + AT_rich Low_complexity Low_complexity 1 23 0 434 139 14 42 chr15 81837449 81837593 -3858161 + (TCTCTG)n Simple_repeat Simple_repeat 5 144 0 225 309 152 44 chr15 81838532 81838736 -3857018 - MIR SINE MIR -8 254 29 387 313 55 0 chr15 81839329 81839492 -3856262 - MIR SINE MIR -70 192 21 654 278 56 5 chr15 81841598 81841796 -3853958 - MIR SINE MIR -50 212 5 205 314 14 0 chr15 81841913 81841983 -3853771 - L2 LINE L2 -287 2985 2915 1855 167 3 0 chr15 81841993 81842275 -3853479 + AluJo SINE Alu 25 307 -5 736 243 191 0 chr15 81843158 81843425 -3852329 - LTR41 LTR ERVL -110 663 346 865 181 30 6 chr15 81843471 81843637 -3852117 - LTR41 LTR ERVL -603 170 1 569 137 110 55 chr15 81844384 81844499 -3851255 - L1M4 LINE L1 -833 5313 5187 2078 136 0 3 chr15 81844499 81844800 -3850954 - AluSx SINE Alu -12 300 1 569 137 110 55 chr15 81844800 81844830 -3850924 - L1M4 LINE L1 -959 5187 5160 289 291 99 25 chr15 81844903 81845203 -3850551 - MLT1J LTR MaLR 0 481 108 316 271 131 9 chr15 81845988 81846095 -3849659 - L2 LINE L2 0 3313 3194 1389 200 56 62 chr15 81848868 81849766 -3845988 - L1MB8 LINE L1 0 6178 5120 1476 186 4 26 chr15 81849837 81850106 -3845648 - AluJo SINE Alu -45 267 5 682 192 66 0 chr15 81850111 81850262 -3845492 - L1MB8 LINE L1 -1028 5118 4958 2368 98 7 0 chr15 81851295 81851600 -3844154 + AluSp SINE Alu 1 307 -6 372 318 70 0 chr15 81852145 81852274 -3843480 + MER91A DNA MER1_type 54 191 -5 244 259 120 9 chr15 81852279 81852387 -3843367 + L2 LINE L2 2682 2801 -513 336 202 22 101 chr15 81852433 81852522 -3843232 + MER94 DNA DNA 2 83 -51 322 353 42 0 chr15 81853062 81853181 -3842573 + L2 LINE L2 3133 3256 -16 2296 117 0 0 chr15 81853563 81853872 -3841882 - AluSc SINE Alu 0 309 1 266 198 110 55 chr15 81855857 81855948 -3839806 - MIR SINE MIR -118 144 49 209 219 0 27 chr15 81856425 81856498 -3839256 + T-rich Low_complexity Low_complexity 3 73 0 2364 88 0 7 chr15 81857643 81857940 -3837814 + AluSc SINE Alu 1 295 -14 396 0 0 0 chr15 81857940 81857984 -3837770 + (TG)n Simple_repeat Simple_repeat 2 45 0 309 51 0 0 chr15 81858495 81858534 -3837220 + (CA)n Simple_repeat Simple_repeat 2 40 0 217 132 0 0 chr15 81858540 81858578 -3837176 + (TC)n Simple_repeat Simple_repeat 2 39 0 343 218 96 51 chr15 81859137 81859156 -3836598 - L1MA10 LINE L1 0 6334 6316 1905 223 59 14 chr15 81859156 81859649 -3836105 - L1ME1 LINE L1 -5 6161 5647 1174 227 61 37 chr15 81859688 81860063 -3835691 + L1MB8 LINE L1 5781 6164 -14 998 165 19 5 chr15 81860084 81860339 -3835415 + L1ME LINE L1 5182 5439 -725 6580 220 57 30 chr15 81860346 81861305 -3834449 + L1ME LINE L1 8 940 -5704 2302 87 0 0 chr15 81861305 81861578 -3834176 + AluY SINE Alu 16 291 -20 432 0 0 0 chr15 81861578 81861626 -3834128 + (TA)n Simple_repeat Simple_repeat 2 49 0 2302 87 0 0 chr15 81861626 81861638 -3834116 + AluY SINE Alu 290 301 -10 6580 220 57 30 chr15 81861638 81863812 -3831942 + L1ME LINE L1 940 3325 -3319 837 153 0 8 chr15 81863812 81863943 -3831811 + FLAM_C SINE Alu 2 131 -2 6580 220 57 30 chr15 81863943 81864284 -3831470 + L1ME LINE L1 3325 3655 -2989 896 230 44 0 chr15 81864284 81864488 -3831266 + L1ME LINE L1 5939 6151 -513 314 301 90 36 chr15 81866442 81866608 -3829146 - MIR3 SINE MIR -25 183 9 2237 103 0 0 chr15 81866762 81867054 -3828700 + AluSc SINE Alu 1 292 -17 26 0 0 0 chr15 81867887 81867913 -3827841 + AT_rich Low_complexity Low_complexity 1 26 0 249 330 140 6 chr15 81868033 81868212 -3827542 - MIR3 SINE MIR -3 205 3 1117 261 16 4 chr15 81868286 81868539 -3827215 + MIR SINE MIR 7 262 0 412 220 28 46 chr15 81868982 81869091 -3826663 + L2 LINE L2 3207 3313 0 1855 126 37 0 chr15 81869946 81870244 -3825510 - AluSg SINE Alu 0 308 1 237 257 57 0 chr15 81870303 81870373 -3825381 + Charlie8 DNA MER1_type 437 510 -1907 386 272 58 0 chr15 81870708 81870811 -3824943 + MIR3 SINE MIR 48 156 -52 185 263 44 53 chr15 81871335 81871449 -3824305 + MIR3 SINE MIR 4 116 -92 225 136 68 0 chr15 81871494 81871538 -3824216 - MER57A LTR ERV1 -67 336 290 1790 42 56 0 chr15 81871836 81872050 -3823704 + AluY SINE Alu 67 292 -19 26 0 0 0 chr15 81872050 81872076 -3823678 + AT_rich Low_complexity Low_complexity 1 26 0 246 394 62 29 chr15 81872622 81872830 -3822924 - L2 LINE L2 -178 3094 2880 21 0 0 0 chr15 81873218 81873239 -3822515 + AT_rich Low_complexity Low_complexity 1 21 0 587 200 37 0 chr15 81873703 81873838 -3821916 - Charlie1 DNA MER1_type 0 2761 2622 531 204 120 48 chr15 81873829 81873996 -3821758 - Charlie1 DNA MER1_type -2529 232 54 * 183 300 67 42 chr15 81874165 81874285 -3821469 + MIR SINE MIR 132 254 -8 185 361 36 0 chr15 81874621 81874704 -3821050 + MIR SINE MIR 62 147 -115 810 223 48 57 chr15 81874869 81875290 -3820464 - L1MC5 LINE L1 -60 7901 7485 537 275 117 22 chr15 81875484 81875706 -3820048 - MIR SINE MIR 0 262 20 312 282 56 60 chr15 81876580 81876832 -3818922 - L1MEc LINE L1 -4122 2465 2215 546 278 79 19 chr15 81876958 81877275 -3818479 - L1MEc LINE L1 -4596 1991 1656 834 219 69 20 chr15 81877281 81877527 -3818227 + LTR40b LTR ERVL 205 462 0 333 293 12 6 chr15 81877529 81877696 -3818058 - L1MEc LINE L1 -5114 1295 1128 378 318 52 47 chr15 81878259 81878451 -3817303 - L1MEc LINE L1 -5877 519 327 650 216 120 86 chr15 81878625 81878916 -3816838 - MLT1H LTR MaLR 0 549 249 280 238 0 0 chr15 81878982 81879045 -3816709 - MLT1H LTR MaLR -453 89 27 26 0 0 0 chr15 81879345 81879371 -3816383 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 81880865 81880888 -3814866 + AT_rich Low_complexity Low_complexity 1 23 0 885 266 46 12 chr15 81880938 81881135 -3814619 + MIR SINE MIR 14 222 -40 2413 93 0 0 chr15 81881135 81881437 -3814317 + AluSc SINE Alu 1 302 -7 885 266 46 12 chr15 81881437 81881480 -3814274 + MIR SINE MIR 222 262 0 4219 158 36 6 chr15 81881525 81882334 -3813420 - L1MB8 LINE L1 0 6178 5346 483 227 35 14 chr15 81883780 81883921 -3811833 - MER58C DNA MER1_type -2 213 70 182 339 98 9 chr15 81884462 81884574 -3811180 + MIR SINE MIR 90 211 -51 620 183 89 50 chr15 81886115 81886295 -3809459 - L1MC5 LINE L1 -42 7919 7733 320 258 70 23 chr15 81886824 81886952 -3808802 - MIR SINE MIR -9 253 120 713 253 153 13 chr15 81887435 81887664 -3808090 + MIR SINE MIR 1 261 -1 774 146 0 32 chr15 81887813 81887936 -3807818 + FLAM_A SINE Alu 1 119 -14 261 75 0 0 chr15 81887944 81887984 -3807770 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 226 268 0 0 chr15 81887984 81888066 -3807688 + L1MC4 LINE L1 6615 6696 -1346 225 0 0 0 chr15 81888067 81888092 -3807662 + (GA)n Simple_repeat Simple_repeat 2 26 0 308 239 49 109 chr15 81888228 81888278 -3807476 - MLT1G3 LTR MaLR -6 536 485 866 195 32 59 chr15 81888278 81888499 -3807255 - MER58C DNA MER1_type 0 215 1 308 239 49 109 chr15 81888499 81888632 -3807122 - MLT1G3 LTR MaLR -57 485 364 2124 124 10 7 chr15 81888683 81888990 -3806764 + AluSx SINE Alu 1 308 -4 705 144 0 0 chr15 81888995 81889113 -3806641 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 715 251 36 57 chr15 81889127 81889448 -3806306 - MLT1G3 LTR MaLR -245 285 5 2369 100 0 0 chr15 81889879 81890178 -3805576 + AluSq SINE Alu 1 299 -14 209 250 54 0 chr15 81892298 81892354 -3803400 - L3b LINE CR1 -1 1582 1524 2115 94 0 0 chr15 81892380 81892645 -3803109 - AluSc SINE Alu -6 303 39 789 211 165 58 chr15 81892827 81893154 -3802600 - L1MC4 LINE L1 -124 7918 7557 209 250 71 0 chr15 81893186 81893242 -3802512 - MIR SINE MIR -95 113 54 492 193 221 0 chr15 81894298 81894438 -3801316 - MIR SINE MIR -5 257 87 497 280 47 26 chr15 81894746 81895002 -3800752 + L2 LINE L2 2720 2982 -290 382 294 8 40 chr15 81895464 81895590 -3800164 + L2 LINE L2 3190 3311 -2 242 201 108 0 chr15 81895586 81895647 -3800107 - MIR SINE MIR -61 147 102 * 335 284 93 45 chr15 81895666 81896010 -3799744 + L1ME4a LINE L1 5031 5372 -749 565 254 69 72 chr15 81896095 81896299 -3799455 + L1ME4a LINE L1 5482 5686 -435 1600 177 28 18 chr15 81896299 81896581 -3799173 + AluJb SINE Alu 8 292 -20 565 254 69 72 chr15 81896581 81896711 -3799043 + L1ME4a LINE L1 5686 5815 -306 861 189 8 130 chr15 81896729 81896983 -3798771 + MER58A DNA MER1_type 2 224 0 328 286 26 102 chr15 81896994 81897260 -3798494 + L1ME4a LINE L1 5836 6081 -40 2154 131 0 3 chr15 81897284 81897582 -3798172 - AluSx SINE Alu -15 297 1 231 234 47 0 chr15 81897760 81897824 -3797930 + L1ME LINE L1 5522 5588 -533 1901 254 54 14 chr15 81898040 81898689 -3797065 + L1ME1 LINE L1 5473 6147 -19 2270 108 10 0 chr15 81898924 81899220 -3796534 - AluSx SINE Alu -13 299 1 1713 125 81 12 chr15 81900292 81900612 -3795142 - L1MA4A LINE L1 -3 7002 6661 13521 180 60 28 chr15 81900624 81901481 -3794273 - L1MA4A LINE L1 -639 6366 5538 1658 197 14 3 chr15 81901481 81901776 -3793978 - AluJo SINE Alu -14 298 1 13521 180 60 28 chr15 81901776 81904129 -3791625 - L1MA4A LINE L1 -1467 5538 3261 214 26 79 0 chr15 81904129 81904167 -3791587 + T-rich Low_complexity Low_complexity 2 42 0 2184 106 0 14 chr15 81904170 81904463 -3791291 - AluY SINE Alu -22 289 1 13521 180 60 28 chr15 81904463 81905445 -3790309 - L1MA4A LINE L1 -3745 3260 2311 2162 123 7 3 chr15 81905445 81905746 -3790008 - AluSc SINE Alu -7 302 1 13521 180 60 28 chr15 81905746 81907680 -3788074 - L1MA4A LINE L1 -4694 2311 21 4819 136 58 18 chr15 81908296 81909165 -3786589 - MER4D LTR ERV1 0 903 1 21 36 0 0 chr15 81909491 81909519 -3786235 + AT_rich Low_complexity Low_complexity 1 28 0 2616 77 122 5 chr15 81909682 81910083 -3785671 - LTR7 LTR ERV1 -2 448 1 2434 93 48 13 chr15 81910083 81910460 -3785294 - HERVH LTR ERV1 0 7713 7324 1377 143 19 0 chr15 81910460 81910676 -3785078 - HERVH LTR ERV1 -1894 5819 5600 4481 145 0 1 chr15 81910677 81911340 -3784414 - HERVH LTR ERV1 -2564 5149 4488 25120 96 47 31 chr15 81911342 81915274 -3780480 - HERVH LTR ERV1 -3720 3993 1 2027 89 30 8 chr15 81915276 81915627 -3780127 - LTR7 LTR ERV1 -2 448 1 297 266 215 0 chr15 81917252 81917331 -3778423 - MIR SINE MIR -75 133 38 237 93 0 47 chr15 81917474 81917517 -3778237 + L1MA1 LINE L1 6263 6305 0 2170 120 0 16 chr15 81917539 81917847 -3777907 + AluSx SINE Alu 1 303 -9 662 240 190 14 chr15 81917987 81918208 -3777546 + MIR SINE MIR 3 262 0 2335 93 0 7 chr15 81918639 81918941 -3776813 + AluY SINE Alu 1 300 -11 207 0 0 0 chr15 81919226 81919249 -3776505 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7622 56 0 0 chr15 81919249 81920477 -3775277 - L1PA8 LINE L1 -17 6155 4925 189 213 0 0 chr15 81922123 81922170 -3773584 + (TG)n Simple_repeat Simple_repeat 1 47 0 820 254 34 8 chr15 81922186 81922422 -3773332 - LTR16A LTR ERVL -52 398 157 2237 117 0 0 chr15 81922630 81922929 -3772825 - AluY SINE Alu -12 299 1 1002 314 60 25 chr15 81923131 81923568 -3772186 - L3 LINE CR1 -358 1219 768 916 181 6 24 chr15 81923651 81923817 -3771937 + AluJb SINE Alu 136 298 -14 259 268 79 98 chr15 81924039 81924203 -3771551 - MER5B DNA MER1_type -15 163 3 22 35 0 0 chr15 81924533 81924562 -3771192 + AT_rich Low_complexity Low_complexity 1 29 0 203 333 58 11 chr15 81924669 81924756 -3770998 - MIR3 SINE MIR -9 199 109 341 285 177 13 chr15 81924780 81924938 -3770816 + MER5A DNA MER1_type 6 189 0 2550 51 0 16 chr15 81925538 81925853 -3769901 - AluY SINE Alu -1 310 1 31 0 0 0 chr15 81925919 81925950 -3769804 + AT_rich Low_complexity Low_complexity 1 31 0 470 307 212 17 chr15 81926137 81926482 -3769272 + L3 LINE CR1 1148 1559 -18 247 299 15 0 chr15 81926669 81926736 -3769018 + L2 LINE L2 3200 3267 -46 308 326 153 43 chr15 81926741 81927241 -3768513 + L2 LINE L2 2746 3304 -9 708 220 120 35 chr15 81927241 81927441 -3768313 + MER20 DNA MER1_type 3 219 0 308 326 153 43 chr15 81927441 81927453 -3768301 + L2 LINE L2 3304 3313 0 369 341 121 34 chr15 81928863 81929250 -3766504 - L2 LINE L2 -711 2603 2183 196 222 0 0 chr15 81929249 81929294 -3766460 - L2 LINE L2 0 3313 3269 * 24 0 0 0 chr15 81929624 81929648 -3766106 + AT_rich Low_complexity Low_complexity 1 24 0 1881 117 156 9 chr15 81929772 81930098 -3765656 - MSTA LTR MaLR -54 374 1 8442 146 86 37 chr15 81930098 81931602 -3764152 - MSTA-int LTR MaLR 0 1580 3 1080 133 108 30 chr15 81931604 81931643 -3764111 - MSTA LTR MaLR 0 428 393 2218 129 3 0 chr15 81931643 81931952 -3763802 + AluSp SINE Alu 1 310 -3 1080 133 108 30 chr15 81931952 81932115 -3763639 - MSTA LTR MaLR -35 393 210 4536 138 28 3 chr15 81932117 81932785 -3762969 - L1PA15 LINE L1 -7 6158 5474 7823 21 0 2 chr15 81932787 81933687 -3762067 - L1PA2 LINE L1 -3 6152 5255 43739 34 24 1 chr15 81933800 81939167 -3756587 - L1PA15 LINE L1 -659 5496 4 1290 129 26 0 chr15 81939169 81939401 -3756353 - L1P4 LINE L1 -674 5491 5254 2279 132 25 11 chr15 81939425 81939782 -3755972 + THE1C LTR MaLR 14 375 0 240 88 0 0 chr15 81939783 81939817 -3755937 - L1 LINE L1 -910 5236 5203 * 2191 196 23 10 chr15 81939808 81940292 -3755462 - L1P4 LINE L1 -1208 4938 4449 * 6280 181 66 50 chr15 81940274 81943094 -3752660 - L1PA8 LINE L1 -8 6164 3310 428 261 92 57 chr15 81943128 81943281 -3752473 - L1P5 LINE L1 -609 5547 5378 459 0 0 0 chr15 81943281 81943332 -3752422 + (TATAG)n Simple_repeat Simple_repeat 5 55 0 428 261 92 57 chr15 81943332 81943461 -3752293 - L1P5 LINE L1 -778 5378 5255 198 281 109 62 chr15 81943839 81943967 -3751787 + MIR3 SINE MIR 40 173 -35 4541 156 77 31 chr15 81944323 81945381 -3750373 + L1MB3 LINE L1 4684 5842 -341 2381 88 3 0 chr15 81945381 81945688 -3750066 + AluSq SINE Alu 1 308 -5 4541 156 77 31 chr15 81945688 81946046 -3749708 + L1MB3 LINE L1 5842 6182 -1 419 264 72 0 chr15 81947451 81947576 -3748178 - MER112 DNA MER1_type -6 254 121 498 270 73 10 chr15 81947853 81948057 -3747697 + MIR SINE MIR 46 262 0 1051 243 141 6 chr15 81948263 81948604 -3747150 - MER20B DNA MER1_type -60 723 337 * 1591 142 84 99 chr15 81948587 81948671 -3747083 + MER2 DNA MER2_type 7 91 -254 2207 122 0 0 chr15 81948671 81948966 -3746788 + AluSq SINE Alu 1 295 -18 1591 142 84 99 chr15 81948966 81949225 -3746529 + MER2 DNA MER2_type 91 345 0 737 257 25 5 chr15 81949225 81949503 -3746251 - MER20B DNA MER1_type -422 361 37 2582 95 30 38 chr15 81949699 81950066 -3745688 + THE1B LTR MaLR 1 364 0 914 270 90 36 chr15 81951007 81951371 -3744383 - L1ME1 LINE L1 -51 6115 5776 * 3839 216 38 38 chr15 81951353 81952535 -3743219 - L1ME1 LINE L1 -705 5537 4339 1401 210 103 36 chr15 81952535 81952925 -3742829 - MLT1D LTR MaLR 0 505 90 3085 244 38 7 chr15 81952938 81953858 -3741896 - L1ME1 LINE L1 -2492 3654 2706 198 103 0 0 chr15 81954015 81954044 -3741710 + (GAA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr15 81955774 81955795 -3739959 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr15 81956007 81956037 -3739717 + AT_rich Low_complexity Low_complexity 1 30 0 288 293 32 32 chr15 81956872 81957025 -3738729 - MER5A DNA MER1_type -14 168 12 3062 249 134 52 chr15 81957082 81957444 -3738310 + L1MEc LINE L1 2120 2451 -3764 2544 62 0 0 chr15 81957444 81957748 -3738006 + AluY SINE Alu 1 304 -7 3062 249 134 52 chr15 81957748 81959300 -3736454 + L1MEc LINE L1 2451 4160 -2055 245 202 132 35 chr15 81959363 81959383 -3736371 + L1MEc LINE L1 4161 4178 -2037 2197 127 7 0 chr15 81959383 81959690 -3736064 - AluSx SINE Alu -3 309 1 245 202 132 35 chr15 81959690 81959783 -3735971 + L1MEc LINE L1 4178 4285 -1930 279 0 0 0 chr15 81959803 81959834 -3735920 + (TG)n Simple_repeat Simple_repeat 2 32 0 2029 270 116 33 chr15 81959834 81960061 -3735693 + L1MEc LINE L1 4715 4922 -1317 1765 135 13 43 chr15 81960061 81960365 -3735389 + AluJo SINE Alu 1 295 -17 2029 270 116 33 chr15 81960365 81960714 -3735040 + L1MEc LINE L1 4922 5241 -998 2200 117 0 10 chr15 81960714 81961014 -3734740 + AluSq SINE Alu 1 297 -16 2029 270 116 33 chr15 81961014 81961243 -3734511 + L1MEc LINE L1 5241 5450 -789 3728 133 29 19 chr15 81961243 81961839 -3733915 + LTR43 LTR ERV1 1 602 0 2029 270 116 33 chr15 81961839 81961923 -3733831 + L1MEc LINE L1 5450 5526 -713 2329 180 11 25 chr15 81961923 81962362 -3733392 - Tigger2a DNA MER2_type 0 434 2 2029 270 116 33 chr15 81962362 81962836 -3732918 + L1MEc LINE L1 5526 6222 -17 244 292 42 0 chr15 81963174 81963270 -3732484 - MER110 LTR ERV1 -6 485 386 559 253 154 22 chr15 81963322 81963595 -3732159 - MER110A LTR ERV1 -157 311 3 1196 191 92 69 chr15 81963626 81963961 -3731793 - MER2 DNA MER2_type 0 344 2 201 313 47 0 chr15 81964054 81964118 -3731636 + MER91A DNA MER1_type 118 184 -12 311 269 43 0 chr15 81964300 81964393 -3731361 - L1ME LINE L1 -335 6581 6485 403 226 60 101 chr15 81964411 81964481 -3731273 + MIR SINE MIR 41 112 -150 2345 99 0 0 chr15 81964481 81964784 -3730970 - AluSx SINE Alu -8 304 2 403 226 60 101 chr15 81964784 81964881 -3730873 + MIR SINE MIR 112 201 -61 317 239 106 0 chr15 81964929 81965032 -3730722 - L1ME LINE L1 -436 6480 6364 394 278 133 88 chr15 81965473 81966224 -3729530 - L1ME LINE L1 -1147 5794 5001 245 283 62 9 chr15 81966594 81966707 -3729047 - L1P LINE L1 -2314 3832 3714 1022 226 23 5 chr15 81966717 81966934 -3728820 - L1MC1 LINE L1 -5 6328 6108 3732 183 61 16 chr15 81967038 81967840 -3727914 + L1MB8 LINE L1 5341 6178 0 918 95 48 0 chr15 81968114 81968240 -3727514 + AluY SINE Alu 1 132 -179 190 211 39 0 chr15 81969952 81970004 -3725750 + MIR SINE MIR 89 142 -66 1019 175 7 22 chr15 81970843 81971038 -3724716 + L1MDb LINE L1 34 340 -6203 1905 135 36 3 chr15 81971348 81971652 -3724102 - L1MC/D LINE L1 -576 5757 5444 365 228 141 24 chr15 81972182 81972437 -3723317 - L1ME LINE L1 -2991 3950 3666 1497 159 133 20 chr15 81972577 81972879 -3722875 - MER1B DNA MER1_type 0 337 2 2216 254 75 10 chr15 81973335 81973952 -3721802 - MER21B LTR ERV1 -58 805 149 1090 207 76 76 chr15 81973958 81974301 -3721453 + L1MD2 LINE L1 6017 6359 0 660 163 47 111 chr15 81974301 81974387 -3721367 - L1ME LINE L1 -5349 1595 1526 2252 114 0 3 chr15 81974387 81974685 -3721069 + AluSx SINE Alu 1 297 -15 660 163 47 111 chr15 81974685 81974788 -3720966 - L1ME LINE L1 -5418 1526 1418 353 292 71 56 chr15 81975048 81975315 -3720439 - L1ME LINE L1 -6141 282 12 1531 144 21 99 chr15 81975593 81975717 -3720037 - MLT1B LTR MaLR -63 327 195 1733 153 137 41 chr15 81975717 81976104 -3719650 - MSTB LTR MaLR 0 426 3 1531 144 21 99 chr15 81976104 81976312 -3719442 - MLT1B LTR MaLR -195 195 21 340 173 164 64 chr15 81976622 81976732 -3719022 + MIR SINE MIR 80 200 -62 232 324 0 14 chr15 81977029 81977100 -3718654 - L2 LINE L2 -67 3205 3136 2053 117 0 0 chr15 81977244 81977526 -3718228 - AluSx SINE Alu -3 309 28 434 235 119 19 chr15 81977847 81978158 -3717596 - L1ME LINE L1 -2892 3188 2847 488 262 94 21 chr15 81978180 81978371 -3717383 + MIR SINE MIR 2 206 -56 26 50 0 0 chr15 81978403 81978443 -3717311 + AT_rich Low_complexity Low_complexity 1 40 0 2409 81 7 0 chr15 81978470 81978768 -3716986 - AluY SINE Alu -11 300 1 1831 248 131 17 chr15 81978814 81979456 -3716298 - L1ME LINE L1 -5211 859 145 458 318 27 15 chr15 81979813 81980146 -3715608 - L1MEd LINE L1 -3600 2529 2193 302 315 66 66 chr15 81980695 81980726 -3715028 - HAL1 LINE L1 -861 1646 1616 1859 158 3 3 chr15 81980726 81981023 -3714731 - AluJb SINE Alu -15 297 1 302 315 66 66 chr15 81981023 81981188 -3714566 - HAL1 LINE L1 -890 1617 1450 258 248 57 43 chr15 81981288 81981429 -3714325 - L1MEd LINE L1 -4954 1165 1023 2224 121 0 9 chr15 81981564 81981879 -3713875 + AluSx SINE Alu 1 312 0 409 272 166 6 chr15 81982156 81982325 -3713429 + MIR SINE MIR 56 251 -11 302 147 186 29 chr15 81982557 81982659 -3713095 - LTR33A LTR ERVL -1 522 405 2048 111 184 7 chr15 81983099 81983517 -3712237 - LTR14B LTR ERVK 0 608 1 525 241 63 38 chr15 81983521 81983679 -3712075 - LTR50 LTR ERVL -633 162 1 376 128 0 115 chr15 81983734 81983812 -3711942 + L1ME2 LINE L1 4903 4971 -1175 817 182 11 89 chr15 81984083 81984264 -3711490 + MLT1A1 LTR MaLR 142 379 -49 1634 204 67 18 chr15 81984285 81984686 -3711068 + L1MB8 LINE L1 5685 6105 -73 2329 76 7 0 chr15 81984783 81985073 -3710681 - AluSp SINE Alu -21 292 1 1766 130 0 0 chr15 81985604 81985843 -3709911 - AluSg SINE Alu -31 279 41 249 209 102 57 chr15 81985951 81985966 -3709788 - HAL1 LINE L1 -1409 1098 1085 1772 106 0 4 chr15 81985966 81986202 -3709552 - AluSx SINE Alu -77 235 1 249 209 102 57 chr15 81986202 81986363 -3709391 - HAL1 LINE L1 -1422 1085 914 1987 152 0 0 chr15 81986364 81986666 -3709088 - AluSx SINE Alu -10 302 1 638 245 193 31 chr15 81986671 81986993 -3708761 - HsTC2a DNA Tc2 -367 377 4 1468 151 0 34 chr15 81986993 81987232 -3708522 + AluJb SINE Alu 1 231 -81 246 136 23 0 chr15 81987236 81987280 -3708474 + L1ME2 LINE L1 4959 5003 -1143 2929 24 0 0 chr15 81987280 81987613 -3708141 + L1PA5 LINE L1 5819 6151 -3 483 224 42 0 chr15 81987660 81987803 -3707951 + L1ME2 LINE L1 4993 5141 -1005 1058 251 47 15 chr15 81987813 81988151 -3707603 + L1ME2 LINE L1 5696 6044 -120 859 89 36 0 chr15 81988251 81988363 -3707391 + Alu SINE Alu 173 288 -23 246 279 319 22 chr15 81988629 81988855 -3706899 - L2 LINE L2 -1 3312 3020 189 333 13 0 chr15 81989707 81989785 -3705969 - L2 LINE L2 0 3272 3194 1906 137 8 82 chr15 81990488 81990854 -3704900 + MLT1B LTR MaLR 3 341 -49 477 326 136 20 chr15 81991962 81992684 -3703070 + L2 LINE L2 2265 3081 -191 224 167 21 21 chr15 81992803 81992851 -3702903 + L2 LINE L2 3262 3309 -4 330 26 0 0 chr15 81993086 81993125 -3702629 + (CA)n Simple_repeat Simple_repeat 1 39 0 443 213 172 24 chr15 81993897 81994066 -3701688 - LTR33A LTR ERVL 0 523 330 562 213 75 40 chr15 81994281 81994455 -3701299 - LTR50 LTR ERVL -595 200 21 1300 186 108 0 chr15 81994989 81995247 -3700507 - AluJb SINE Alu -26 286 1 183 281 31 0 chr15 81995612 81995676 -3700078 - MIR SINE MIR -75 187 122 184 267 33 33 chr15 81995871 81995931 -3699823 - L2 LINE L2 -6 3307 3248 4351 230 33 4 chr15 81996710 81997841 -3697913 + L1M4 LINE L1 4132 5294 -852 1642 162 59 4 chr15 81997843 81998114 -3697640 + AluJb SINE Alu 1 286 -26 996 88 31 6 chr15 81998115 81998275 -3697479 - L1MC1 LINE L1 -368 5965 5802 462 105 42 21 chr15 81998702 81998797 -3696957 + GA-rich Low_complexity Low_complexity 1 97 0 258 377 0 0 chr15 81998902 81999069 -3696685 + C-rich Low_complexity Low_complexity 1 167 0 205 319 0 0 chr15 81999416 81999488 -3696266 + G-rich Low_complexity Low_complexity 1 72 0 184 238 12 12 chr15 81999915 81999995 -3695759 + CT-rich Low_complexity Low_complexity 2 81 0 559 261 33 56 chr15 82000182 82000397 -3695357 - L1ME1 LINE L1 -66 6100 5891 1690 135 115 0 chr15 82000409 82000548 -3695206 - L1PA16 LINE L1 -9 6157 6035 201 39 0 0 chr15 82000548 82000574 -3695180 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 1690 135 115 0 chr15 82000574 82000730 -3695024 - L1PA16 LINE L1 -131 6035 5828 * 2504 133 21 0 chr15 82000729 82001113 -3694641 + L1PA16 LINE L1 5431 5822 -344 780 231 255 18 chr15 82001134 82001612 -3694142 - L1MD2 LINE L1 -471 5888 5280 * 43619 37 21 2 chr15 82001586 82007621 -3688133 - L1PA3 LINE L1 0 6155 1 267 211 0 40 chr15 82007622 82007698 -3688056 - L1ME1 LINE L1 -982 5362 5290 1231 142 24 9 chr15 82007713 82007925 -3687829 - L1MB4 LINE L1 -2 6178 5964 21 0 0 0 chr15 82007962 82007983 -3687771 + AT_rich Low_complexity Low_complexity 1 21 0 2792 74 19 16 chr15 82008035 82008414 -3687340 - L1PB1 LINE L1 -2 6865 6486 2471 50 3 16 chr15 82008418 82008740 -3687014 - L1PA7 LINE L1 -6 6148 5831 15425 88 1 0 chr15 82008873 82010953 -3684801 - L1PA7 LINE L1 -752 5394 3313 11842 178 13 14 chr15 82010938 82011007 -3684747 - L1PB1 LINE L1 -352 6515 6447 * 1917 104 0 15 chr15 82011007 82011291 -3684463 - AluY SINE Alu 0 308 29 11842 178 13 14 chr15 82011291 82014361 -3681393 - L1PB1 LINE L1 -420 6447 3381 8101 93 29 3 chr15 82014461 82014908 -3680846 - L1PB1 LINE L1 -4289 2574 2140 2285 112 3 0 chr15 82014908 82015212 -3680542 - AluSx SINE Alu -7 305 1 8101 93 29 3 chr15 82015212 82015996 -3679758 - L1PB1 LINE L1 -4723 2140 1311 546 167 0 10 chr15 82015999 82016101 -3679653 - L1PB1 LINE L1 -5706 1157 1057 2534 208 28 43 chr15 82016115 82016793 -3678961 - L1M4 LINE L1 -1655 4491 3824 313 275 17 54 chr15 82017400 82017580 -3678174 - MIR3 SINE MIR -21 241 77 363 287 60 36 chr15 82017653 82017820 -3677934 + MIR SINE MIR 12 182 -80 242 330 46 0 chr15 82018055 82018164 -3677590 + MIR SINE MIR 76 189 -73 406 303 71 53 chr15 82018271 82018552 -3677202 - HAL1 LINE L1 -1 2506 2221 434 262 56 34 chr15 82018557 82018788 -3676966 - HAL1b LINE L1 -135 2372 752 1684 216 70 57 chr15 82019309 82019869 -3675885 - MLT1F1 LTR MaLR 0 567 1 4521 126 56 8 chr15 82019979 82020751 -3675003 + Tigger3(Golem) DNA MER2_type 2221 3029 0 539 130 80 10 chr15 82022529 82022629 -3673125 - L1MB4 LINE L1 0 6180 6074 1636 124 5 146 chr15 82022629 82023007 -3672747 + MER41B LTR ERV1 6 330 -305 890 174 50 0 chr15 82023025 82023186 -3672568 - L1M3 LINE L1 -477 5706 5538 257 267 158 17 chr15 82023187 82023307 -3672447 + L2 LINE L2 3164 3300 -13 1610 166 13 96 chr15 82024624 82025022 -3670732 - MLT1A1 LTR MaLR 0 365 1 634 331 136 18 chr15 82025070 82025681 -3670073 - L2 LINE L2 -1936 1378 696 817 273 30 72 chr15 82025681 82026114 -3669640 - MLT1J LTR MaLR 0 511 97 295 304 86 45 chr15 82026154 82026397 -3669357 - L2 LINE L2 -2980 334 82 305 213 38 106 chr15 82026412 82026572 -3669182 + LTR33A LTR ERVL 11 159 -364 963 116 0 0 chr15 82026821 82026967 -3668787 - MER4C LTR ERV1 -315 150 5 403 234 162 94 chr15 82027182 82027627 -3668127 - L1ME1 LINE L1 -307 5859 5385 664 142 0 55 chr15 82027786 82027913 -3667841 - L1MA3 LINE L1 -3 6302 6183 2252 85 0 0 chr15 82028314 82028620 -3667134 - AluSg SINE Alu 0 319 14 218 384 38 19 chr15 82028817 82029028 -3666726 + MIR SINE MIR 19 233 -29 25 90 0 0 chr15 82029749 82029816 -3665938 + GC_rich Low_complexity Low_complexity 1 67 0 27 81 0 0 chr15 82029999 82030061 -3665693 + GC_rich Low_complexity Low_complexity 1 62 0 39 74 0 0 chr15 82030156 82030237 -3665517 + GC_rich Low_complexity Low_complexity 1 81 0 35 0 0 0 chr15 82030339 82030374 -3665380 + GC_rich Low_complexity Low_complexity 1 35 0 222 205 0 87 chr15 82031808 82031935 -3663819 + (CTGGGG)n Simple_repeat Simple_repeat 4 119 0 666 220 17 52 chr15 82032857 82033030 -3662724 - MER58B DNA MER1_type 0 341 175 1839 88 8 19 chr15 82034327 82034588 -3661166 + AluSq SINE Alu 3 260 -53 327 331 74 6 chr15 82035645 82035808 -3659946 + MIR SINE MIR 64 237 -25 798 201 33 5 chr15 82036280 82036464 -3659290 - MER5A DNA MER1_type 0 189 1 738 251 6 11 chr15 82037974 82038153 -3657601 - MER5B DNA MER1_type 0 178 1 312 223 124 5 chr15 82039596 82039708 -3656046 + MER5A DNA MER1_type 4 186 -3 29 0 0 0 chr15 82040138 82040167 -3655587 + AT_rich Low_complexity Low_complexity 1 29 0 973 176 51 0 chr15 82041035 82041211 -3654543 + MER5A DNA MER1_type 5 189 0 344 283 100 17 chr15 82041211 82041331 -3654423 - MER5B DNA MER1_type -44 134 5 1882 140 46 0 chr15 82041963 82042248 -3653506 - AluJb SINE Alu -14 298 1 647 232 60 12 chr15 82042339 82042507 -3653247 - MER5B DNA MER1_type 0 178 3 929 39 94 8 chr15 82044342 82044470 -3651284 - MER85 DNA T2_type 0 139 1 1176 128 0 0 chr15 82044894 82045058 -3650696 - AluSp SINE Alu -10 303 140 2093 118 10 7 chr15 82045118 82045414 -3650340 - AluSg SINE Alu -13 297 1 2279 166 3 3 chr15 82046181 82046542 -3649212 - MLT1A1 LTR MaLR -1 364 4 181 123 35 175 chr15 82047851 82047908 -3647846 + L3 LINE CR1 1461 1509 -68 673 207 0 36 chr15 82049150 82049290 -3646464 - AluJo SINE Alu -176 136 2 222 266 156 0 chr15 82049377 82049441 -3646313 - L2 LINE L2 -38 3275 3202 294 209 0 0 chr15 82050389 82050456 -3645298 - L1MC4 LINE L1 -135 7907 7841 847 209 53 64 chr15 82050500 82050783 -3644971 - L1MC4 LINE L1 -281 7761 7482 668 236 36 0 chr15 82051088 82051253 -3644501 - L1MC4 LINE L1 -524 7518 7348 345 231 55 0 chr15 82051257 82051348 -3644406 - L1MC4 LINE L1 -979 7063 6968 585 340 39 16 chr15 82051372 82051930 -3643824 - L1M4 LINE L1 -2203 3943 3373 236 358 0 0 chr15 82052093 82052160 -3643594 + L2 LINE L2 2992 3058 -214 2230 193 29 19 chr15 82052283 82052760 -3642994 - MLT1D LTR MaLR -1 504 23 1432 162 42 32 chr15 82055482 82055766 -3639988 - AluJb SINE Alu -25 287 1 478 273 121 44 chr15 82057296 82057611 -3638143 - MLT1K LTR MaLR -63 525 187 1532 246 109 5 chr15 82058139 82058665 -3637089 - MLT1G LTR MaLR 0 578 1 282 214 14 0 chr15 82058904 82058974 -3636780 - L1MA10 LINE L1 -9 6325 6255 834 153 30 0 chr15 82058978 82059109 -3636645 - AluJo SINE Alu -177 135 1 261 200 77 0 chr15 82059110 82059175 -3636579 - L1MA10 LINE L1 -65 6269 6200 2092 139 81 77 chr15 82059661 82060092 -3635662 - Tigger2a DNA MER2_type -1 433 1 442 360 29 29 chr15 82060433 82060819 -3634935 + HAL1b LINE L1 309 694 -654 2116 97 0 30 chr15 82060822 82061148 -3634606 + AluSq SINE Alu 1 313 0 1353 255 12 0 chr15 82061230 82061571 -3634183 + L1M4 LINE L1 4998 5342 -804 329 42 0 21 chr15 82061575 82061623 -3634131 - MLT2A1 LTR ERVL -8 436 390 23 0 0 0 chr15 82061631 82061654 -3634100 + AT_rich Low_complexity Low_complexity 1 23 0 276 115 26 13 chr15 82061662 82061740 -3634014 + (TA)n Simple_repeat Simple_repeat 2 80 0 2215 90 10 6 chr15 82061742 82062054 -3633700 - MLT2A1 LTR ERVL -45 399 87 635 82 12 0 chr15 82262054 82262139 -3433615 - L1PA8A LINE L1 -612 5519 5434 418 179 64 0 chr15 82262144 82262222 -3433532 + MER45A DNA AcHobo 96 178 0 323 191 29 15 chr15 82262250 82262318 -3433436 - MER94 DNA DNA -1 133 65 2326 75 10 0 chr15 82262408 82262703 -3433051 + AluY SINE Alu 1 298 -13 1153 187 103 0 chr15 82263636 82263850 -3431904 - AluSx SINE Alu -76 236 1 616 364 42 32 chr15 82263874 82264468 -3431286 - HERV16 LTR ERVL -1163 4322 3723 4114 306 79 16 chr15 82264497 82264654 -3431100 - HERV16 LTR ERVL -1900 3096 2950 2243 99 30 0 chr15 82264654 82264957 -3430797 - AluSx SINE Alu 0 312 1 4114 306 79 16 chr15 82264957 82266768 -3428986 - HERV16 LTR ERVL -2046 2950 1461 21 89 0 0 chr15 82267383 82267439 -3428315 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr15 82267743 82267773 -3427981 + AT_rich Low_complexity Low_complexity 1 30 0 221 239 30 0 chr15 82269132 82269199 -3426555 + A-rich Low_complexity Low_complexity 5 73 0 9518 89 13 32 chr15 82269925 82271341 -3424413 + HERVH LTR ERV1 1608 2995 -4718 5689 92 21 2 chr15 82271321 82272119 -3423635 + HERVH LTR ERV1 3140 3952 -3761 * 3933 113 0 0 chr15 82272117 82272649 -3423105 + HERVH LTR ERV1 4618 5149 -2564 * 1456 125 19 0 chr15 82272650 82272866 -3422888 + HERVH LTR ERV1 5600 5819 -1894 2528 83 53 13 chr15 82272866 82273241 -3422513 + HERVH LTR ERV1 7324 7713 0 2385 82 125 5 chr15 82273241 82273609 -3422145 + LTR7 LTR ERV1 1 412 -38 315 0 0 0 chr15 82273609 82273644 -3422110 + (A)n Simple_repeat Simple_repeat 1 35 0 362 229 55 0 chr15 82273711 82273820 -3421934 + L1MA9 LINE L1 6159 6273 -39 5521 97 24 8 chr15 82273933 82274755 -3420999 - HERVH LTR ERV1 -6086 1627 793 3059 129 11 29 chr15 82274724 82275251 -3420503 - HERVH LTR ERV1 -7195 518 1 * 684 87 19 19 chr15 82275253 82275356 -3420398 - LTR7 LTR ERV1 -2 448 346 806 257 18 73 chr15 82275700 82275861 -3419893 + MIR SINE MIR 6 147 -115 1966 150 0 11 chr15 82275861 82276147 -3419607 + AluJb SINE Alu 13 295 -17 806 257 18 73 chr15 82276147 82276257 -3419497 + MIR SINE MIR 147 262 0 3560 89 33 2 chr15 82276328 82276842 -3418912 + L1P5 LINE L1 5263 5792 -359 233 82 0 164 chr15 82276850 82276911 -3418843 - L1P5 LINE L1 -359 5792 5742 229 167 0 67 chr15 82276936 82276996 -3418758 + L1MC4 LINE L1 6648 6703 -1339 229 206 41 0 chr15 82277001 82277074 -3418680 - L1MCa LINE L1 -4356 2070 1995 382 161 15 23 chr15 82277075 82277205 -3418549 + (TA)n Simple_repeat Simple_repeat 2 130 0 255 221 11 42 chr15 82277206 82277301 -3418453 + L1MC4 LINE L1 6612 6703 -1339 198 0 0 0 chr15 82278847 82278869 -3416885 + (A)n Simple_repeat Simple_repeat 1 22 0 244 295 0 26 chr15 82282116 82282194 -3413560 + G-rich Low_complexity Low_complexity 3 78 0 533 158 16 16 chr15 82282205 82282332 -3413422 + GA-rich Low_complexity Low_complexity 2 128 0 226 130 0 56 chr15 82282886 82282940 -3412814 + (CGG)n Simple_repeat Simple_repeat 2 52 0 225 132 0 0 chr15 82283147 82283185 -3412569 + (CACG)n Simple_repeat Simple_repeat 1 38 0 369 136 0 0 chr15 82283583 82283649 -3412105 + (TCC)n Simple_repeat Simple_repeat 1 66 0 249 159 0 0 chr15 82283771 82283815 -3411939 + A-rich Low_complexity Low_complexity 1 44 0 315 130 0 0 chr15 82284316 82284370 -3411384 + (TG)n Simple_repeat Simple_repeat 2 55 0 226 250 0 18 chr15 82284386 82284442 -3411312 + GA-rich Low_complexity Low_complexity 2 56 0 333 0 0 0 chr15 82284924 82284961 -3410793 + (TG)n Simple_repeat Simple_repeat 1 37 0 264 30 0 0 chr15 82285724 82285757 -3409997 + (GA)n Simple_repeat Simple_repeat 1 33 0 2490 64 0 6 chr15 82286983 82287339 -3408415 - AluSg SINE Alu 0 354 1 225 0 0 0 chr15 82289924 82289949 -3405805 + (TGG)n Simple_repeat Simple_repeat 1 25 0 291 306 0 36 chr15 82290204 82290315 -3405439 + CT-rich Low_complexity Low_complexity 1 107 0 185 0 40 0 chr15 82291220 82291245 -3404509 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 192 77 0 0 chr15 82291244 82291270 -3404484 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr15 82292737 82292765 -3402989 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr15 82294872 82294900 -3400854 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 204 135 0 0 chr15 82295231 82295268 -3400486 + (CA)n Simple_repeat Simple_repeat 1 37 0 2734 133 36 5 chr15 82296101 82296514 -3399240 - MSTB LTR MaLR 0 426 1 635 323 100 18 chr15 82296713 82297044 -3398710 + L2 LINE L2 883 1240 -2074 1393 179 37 57 chr15 82297137 82297520 -3398234 + MLT2B1 LTR ERVL 1 469 -51 384 229 183 7 chr15 82297629 82297706 -3398048 + L2 LINE L2 1698 1760 -1554 2046 105 43 0 chr15 82297706 82297982 -3397772 - AluSg SINE Alu -17 293 6 384 229 183 7 chr15 82297982 82298057 -3397697 + L2 LINE L2 1760 1877 -1437 1209 125 5 2 chr15 82298103 82298305 -3397449 - L1PB2 LINE L1 -197 5954 5755 685 262 53 84 chr15 82298305 82298660 -3397094 + L2 LINE L2 2028 2371 -943 678 330 107 17 chr15 82298699 82299017 -3396737 + L2 LINE L2 2727 3104 -209 345 93 0 0 chr15 82299017 82299071 -3396683 + (CA)n Simple_repeat Simple_repeat 2 55 0 678 330 107 17 chr15 82299071 82299242 -3396512 + L2 LINE L2 3104 3258 -55 695 294 108 19 chr15 82302717 82303095 -3392659 + Charlie7 DNA MER1_type 52 463 -2149 290 218 35 35 chr15 82303145 82303232 -3392522 + Charlie7 DNA MER1_type 564 650 -1962 838 237 98 15 chr15 82303232 82303498 -3392256 - L2 LINE L2 -5 3308 3021 2438 68 3 0 chr15 82303678 82303973 -3391781 - L1PA7 LINE L1 -3 6151 5856 3776 77 0 0 chr15 82303973 82304468 -3391286 + L1P LINE L1 4759 5253 -893 376 222 35 58 chr15 82304468 82304639 -3391115 + Charlie7 DNA MER1_type 2445 2611 -1 457 293 9 0 chr15 82305053 82305169 -3390585 + L2 LINE L2 3197 3313 0 25 31 0 0 chr15 82305422 82305454 -3390300 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr15 82305543 82305567 -3390187 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 82305821 82305843 -3389911 + AT_rich Low_complexity Low_complexity 1 22 0 321 198 0 0 chr15 82306941 82307062 -3388692 + (TA)n Simple_repeat Simple_repeat 2 122 0 2792 88 11 3 chr15 82307068 82307433 -3388321 + L1PB1 LINE L1 5784 6151 0 1622 142 156 7 chr15 82307616 82307911 -3387843 + MER44D DNA MER2_type 1 609 0 1621 200 0 30 chr15 82308336 82308636 -3387118 - AluJb SINE Alu -21 291 1 439 319 42 6 chr15 82308853 82309031 -3386723 + MIR SINE MIR 14 197 -65 342 215 91 25 chr15 82311047 82311168 -3384586 - L1ME4a LINE L1 -187 5934 5806 457 239 108 33 chr15 82311173 82311386 -3384368 - L1ME4a LINE L1 -359 5762 5534 443 314 101 21 chr15 82311868 82312206 -3383548 - L1ME4a LINE L1 -206 5915 5551 761 153 0 0 chr15 82312314 82312438 -3383316 - MLT1D LTR MaLR -3 502 379 382 209 12 58 chr15 82315183 82315269 -3380485 - MLT1J LTR MaLR -277 234 153 2016 186 42 5 chr15 82315428 82315859 -3379895 + L1MB5 LINE L1 5719 6165 -9 250 89 0 89 chr15 82316055 82316146 -3379608 - Alu SINE Alu 0 337 252 249 226 278 26 chr15 82316205 82316320 -3379434 + MLT2F LTR ERVL 3 146 -517 1626 197 45 30 chr15 82316350 82316746 -3379008 + MLT2F LTR ERVL 262 663 0 323 182 0 0 chr15 82316966 82317021 -3378733 + L1ME LINE L1 5618 5672 -498 258 32 0 0 chr15 82317026 82317057 -3378697 + (TG)n Simple_repeat Simple_repeat 2 32 0 1674 182 7 0 chr15 82317096 82317387 -3378367 - MER57A LTR ERV1 0 403 111 21 0 0 0 chr15 82317756 82317777 -3377977 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr15 82317899 82317947 -3377807 + AT_rich Low_complexity Low_complexity 1 48 0 1790 158 4 4 chr15 82318054 82318333 -3377421 - AluSx SINE Alu -33 279 1 180 111 0 0 chr15 82318444 82318471 -3377283 + MIR SINE MIR 157 183 -79 1439 149 156 32 chr15 82318529 82318844 -3376910 - MER47A DNA MER2_type 0 366 13 11228 157 22 8 chr15 82319015 82322238 -3373516 + L1MA2 LINE L1 3028 6297 -7 2238 198 67 4 chr15 82322774 82323249 -3372505 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr15 82323766 82323791 -3371963 + AT_rich Low_complexity Low_complexity 1 25 0 207 385 49 16 chr15 82324115 82324237 -3371517 - L2 LINE L2 -2 3270 3145 366 286 168 14 chr15 82325266 82325486 -3370268 + MIR SINE MIR 9 262 0 223 370 86 6 chr15 82325664 82325826 -3369928 - L2 LINE L2 -223 3049 2875 1051 281 153 51 chr15 82326294 82326968 -3368786 + L2 LINE L2 2523 3286 -27 1809 207 5 11 chr15 82327437 82327804 -3367950 + MLT1A1 LTR MaLR 1 365 0 6775 232 66 55 chr15 82328310 82330819 -3364935 + L1ME1 LINE L1 2499 5035 -1111 1977 185 19 0 chr15 82330826 82331199 -3364555 + L1ME1 LINE L1 5499 5878 -288 636 205 112 44 chr15 82331202 82331407 -3364347 + L1ME1 LINE L1 5934 6152 -14 349 288 65 47 chr15 82332454 82332624 -3363130 + MLT1K LTR MaLR 2 174 -414 292 350 24 24 chr15 82332930 82333136 -3362618 + L2 LINE L2 694 899 -2415 348 319 128 59 chr15 82333268 82333675 -3362079 - HAL1 LINE L1 -2045 462 28 249 425 16 8 chr15 82333976 82334103 -3361651 - L2 LINE L2 -22 3250 3123 21 0 0 0 chr15 82334117 82334138 -3361616 + AT_rich Low_complexity Low_complexity 1 21 0 228 382 132 14 chr15 82334238 82334458 -3361296 - L2 LINE L2 -209 3063 2818 220 336 144 8 chr15 82334545 82334670 -3361084 - L3b LINE CR1 -167 1416 1275 274 197 42 0 chr15 82335750 82335821 -3359933 + (TA)n Simple_repeat Simple_repeat 1 74 0 2241 113 16 34 chr15 82336123 82336503 -3359251 - THE1C LTR MaLR -2 373 1 903 276 75 4 chr15 82337261 82337500 -3358254 + MIR SINE MIR 1 256 -6 357 306 165 0 chr15 82337596 82337717 -3358037 + L2 LINE L2 3121 3261 -11 2305 68 0 4 chr15 82337740 82338021 -3357733 + AluY SINE Alu 7 286 -25 298 250 0 67 chr15 82338058 82338162 -3357592 + MIR SINE MIR 166 262 0 195 162 0 0 chr15 82338405 82338442 -3357312 + (CAA)n Simple_repeat Simple_repeat 2 38 0 304 308 50 22 chr15 82338448 82338630 -3357124 + Charlie8 DNA MER1_type 82 268 -2149 189 0 0 0 chr15 82338747 82338768 -3356986 + (TG)n Simple_repeat Simple_repeat 2 22 0 30 0 0 0 chr15 82339217 82339247 -3356507 + AT_rich Low_complexity Low_complexity 1 30 0 263 344 136 29 chr15 82339741 82340014 -3355740 + L3b LINE CR1 1248 1549 -34 207 0 0 0 chr15 82340267 82340290 -3355464 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6425 85 13 2 chr15 82340312 82341249 -3354505 + L1PA11 LINE L1 5208 6158 -16 4998 89 7 4 chr15 82341699 82342405 -3353349 + L1PA8 LINE L1 5461 6168 -4 16549 159 24 7 chr15 82342442 82345443 -3350311 - L1P LINE L1 -1567 4579 1528 581 207 67 0 chr15 82345447 82345582 -3350172 - L1P LINE L1 -4493 1653 1510 27 49 0 0 chr15 82350381 82350422 -3345332 + AT_rich Low_complexity Low_complexity 1 41 0 245 340 0 30 chr15 82350951 82351051 -3344703 - L3 LINE CR1 -50 1527 1431 180 0 0 0 chr15 82351089 82351109 -3344645 + (TAA)n Simple_repeat Simple_repeat 1 20 0 208 275 204 21 chr15 82351119 82351261 -3344493 - MIR SINE MIR -17 245 78 209 302 288 19 chr15 82351406 82351618 -3344136 - L3 LINE CR1 -340 1237 969 981 137 6 48 chr15 82352010 82352178 -3343576 + FRAM SINE Alu 1 157 -19 2131 128 0 0 chr15 82352538 82352827 -3342927 - AluSx SINE Alu -23 289 1 22 0 0 0 chr15 82352832 82352854 -3342900 + AT_rich Low_complexity Low_complexity 1 22 0 730 314 115 74 chr15 82353538 82353709 -3342045 + L2 LINE L2 1959 2121 -1192 13419 79 9 4 chr15 82353709 82356348 -3339406 - L1PA7 LINE L1 0 6154 3504 730 314 115 74 chr15 82356348 82356564 -3339190 + L2 LINE L2 2121 2327 -986 4582 98 1 34 chr15 82356564 82357280 -3338474 + L1PA13 LINE L1 5471 6163 0 730 314 115 74 chr15 82357280 82357950 -3337804 + L2 LINE L2 2327 3060 -253 492 244 26 0 chr15 82357950 82358065 -3337689 + L2 LINE L2 3196 3313 0 213 241 19 37 chr15 82358081 82358135 -3337619 + MIR3 SINE MIR 125 177 -31 2063 125 34 3 chr15 82358951 82359247 -3336507 + AluSq SINE Alu 1 305 -8 1650 77 9 0 chr15 82359368 82359588 -3336166 + L1PA8 LINE L1 5949 6170 -2 281 288 182 0 chr15 82361901 82362033 -3333721 - L2 LINE L2 0 3272 3117 3708 52 11 0 chr15 82362910 82363372 -3332382 - L1PA5 LINE L1 -2 6152 5686 231 36 0 0 chr15 82363801 82363829 -3331925 + (A)n Simple_repeat Simple_repeat 1 28 0 642 221 101 13 chr15 82363832 82363990 -3331764 + MER91B DNA MER1_type 12 183 -7 239 261 72 0 chr15 82366886 82366955 -3328799 + L2 LINE L2 2890 2963 -309 180 0 0 0 chr15 82367224 82367244 -3328510 + (A)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr15 82367772 82367798 -3327956 + (GA)n Simple_repeat Simple_repeat 1 26 0 457 313 6 6 chr15 82368281 82368457 -3327297 + L1ME LINE L1 5552 5727 -394 24 32 0 0 chr15 82370157 82370188 -3325566 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr15 82370788 82370819 -3324935 + AT_rich Low_complexity Low_complexity 1 31 0 467 176 8 92 chr15 82371225 82371305 -3324449 + MLT1D LTR MaLR 6 74 -431 1821 107 24 134 chr15 82371305 82371724 -3324030 + THE1C LTR MaLR 3 375 0 467 176 8 92 chr15 82371724 82371762 -3323992 + MLT1D LTR MaLR 74 114 -391 1130 72 0 0 chr15 82371762 82371901 -3323853 - AluSg/x SINE Alu -17 292 154 1964 206 50 3 chr15 82371906 82372289 -3323465 + MLT1D LTR MaLR 105 505 0 1347 99 31 0 chr15 82372354 82372546 -3323208 - AluSp SINE Alu 0 313 116 375 230 61 131 chr15 82372561 82372905 -3322849 + L1ME1 LINE L1 149 468 -5955 644 294 88 0 chr15 82373247 82373553 -3322201 + L1ME1 LINE L1 1137 1469 -4954 1246 257 79 91 chr15 82373656 82374301 -3321453 + L1ME1 LINE L1 1711 2362 -4579 3368 172 32 11 chr15 82374301 82374947 -3320807 - L1PA16 LINE L1 -7 6159 5500 1246 257 79 91 chr15 82374947 82375730 -3320024 + L1ME1 LINE L1 2362 3290 -3651 * 2184 171 40 7 chr15 82375716 82376144 -3319610 + L1MA8 LINE L1 5735 6176 -115 4741 245 110 38 chr15 82376150 82376633 -3319121 + L1ME1 LINE L1 3270 3716 -3225 2011 137 3 3 chr15 82376633 82376939 -3318815 + AluSx SINE Alu 2 307 -5 4741 245 110 38 chr15 82376939 82377016 -3318738 + L1ME1 LINE L1 3716 3786 -3155 2560 147 2 81 chr15 82377016 82377146 -3318608 + L1PB4 LINE L1 5652 5791 -365 414 0 0 0 chr15 82377146 82377192 -3318562 + (TG)n Simple_repeat Simple_repeat 2 47 0 2560 147 2 81 chr15 82377192 82377606 -3318148 + L1PB4 LINE L1 5791 6153 -3 4741 245 110 38 chr15 82377606 82379489 -3316265 + L1ME1 LINE L1 3786 5892 -1049 936 214 235 16 chr15 82379508 82379887 -3315867 + L1ME1 LINE L1 6414 6875 -86 2475 195 19 60 chr15 82379898 82380463 -3315291 + MER44D DNA MER2_type 9 605 0 290 239 0 0 chr15 82380471 82380542 -3315212 + L1ME2 LINE L1 6089 6159 -5 677 254 35 63 chr15 82380846 82381271 -3314483 + L1MC5 LINE L1 7489 7901 -60 1808 190 52 3 chr15 82381487 82381855 -3313899 - L1PA16 LINE L1 -11 6155 5770 5734 61 5 1 chr15 82381855 82382589 -3313165 - L1PA8 LINE L1 -1 6171 5433 1384 83 0 10 chr15 82382589 82382782 -3312972 - L1PA16 LINE L1 -381 5785 5595 * 6961 199 16 22 chr15 82382777 82384369 -3311385 - L1 LINE L1 -785 5361 3780 281 233 11 0 chr15 82384612 82384702 -3311052 + (TA)n Simple_repeat Simple_repeat 1 91 0 2361 80 0 3 chr15 82385439 82385752 -3310002 - MER41A LTR ERV1 -85 469 158 5530 68 24 43 chr15 82385752 82386546 -3309208 - L1PA8 LINE L1 -4 6168 5390 2391 94 0 0 chr15 82386571 82386869 -3308885 - AluSg SINE Alu -12 298 1 227 216 20 0 chr15 82386991 82387042 -3308712 + (CA)n Simple_repeat Simple_repeat 2 53 0 202 194 0 0 chr15 82387572 82387608 -3308146 + GA-rich Low_complexity Low_complexity 4 39 0 2218 127 3 0 chr15 82388532 82388840 -3306914 + AluSg SINE Alu 1 309 -1 1529 271 111 18 chr15 82389662 82390327 -3305427 - HAL1 LINE L1 -1189 1318 592 405 0 0 0 chr15 82390439 82390484 -3305270 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr15 82390752 82390773 -3304981 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr15 82390929 82390957 -3304797 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1812 303 114 26 chr15 82391161 82392435 -3303319 + L1MCc LINE L1 246 1640 -4891 1075 248 93 102 chr15 82392492 82392924 -3302830 - MLT1A1 LTR MaLR 0 365 1 375 203 125 0 chr15 82392924 82393032 -3302722 + L1MD2 LINE L1 5737 5857 -529 438 258 0 0 chr15 82393074 82393163 -3302591 + FLAM_C SINE Alu 29 117 -26 2775 141 45 6 chr15 82393165 82393633 -3302121 + L1PB4 LINE L1 5658 6143 -13 252 0 0 0 chr15 82393636 82393664 -3302090 + (CA)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr15 82393663 82393685 -3302069 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 1049 246 18 39 chr15 82393686 82393970 -3301784 + L1ME2 LINE L1 5870 6147 -17 5928 77 5 1 chr15 82393988 82394768 -3300986 - L1PA7 LINE L1 -6 6148 5366 * 10233 108 9 50 chr15 82394766 82396484 -3299270 + L1PA7 LINE L1 3708 5354 -792 320 254 155 0 chr15 82396951 82397093 -3298661 + L1ME4a LINE L1 5956 6119 -2 21 57 0 0 chr15 82398212 82398247 -3297507 + AT_rich Low_complexity Low_complexity 1 35 0 289 264 126 0 chr15 82398369 82398456 -3297298 + MER5A DNA MER1_type 9 106 -83 282 308 43 8 chr15 82399201 82399318 -3296436 - L2 LINE L2 -4 3309 3189 23 0 0 0 chr15 82399472 82399495 -3296259 + AT_rich Low_complexity Low_complexity 1 23 0 357 24 0 0 chr15 82399661 82399703 -3296051 + (TG)n Simple_repeat Simple_repeat 1 42 0 2082 122 86 21 chr15 82399756 82400093 -3295661 + THE1B LTR MaLR 6 364 0 2283 262 74 20 chr15 82400123 82400960 -3294794 - L1ME3A LINE L1 -9 6161 5280 284 299 9 9 chr15 82401006 82401113 -3294641 - MLT1I LTR MaLR -22 387 281 429 331 12 62 chr15 82401155 82401397 -3294357 - MLT1I LTR MaLR -121 288 59 259 306 18 9 chr15 82401490 82401601 -3294153 - L1ME3A LINE L1 -956 5190 5079 1217 202 19 0 chr15 82401640 82401853 -3293901 - MER58A DNA MER1_type 0 224 8 1536 154 56 19 chr15 82401901 82402167 -3293587 - MER1B DNA MER1_type -63 276 1 225 269 48 19 chr15 82402168 82402272 -3293482 - L1ME3A LINE L1 -1104 5042 4936 1241 134 0 5 chr15 82402275 82402461 -3293293 + AluSc SINE Alu 115 299 -10 492 18 0 0 chr15 82403086 82403143 -3292611 + (TC)n Simple_repeat Simple_repeat 2 58 0 275 0 29 0 chr15 82403142 82403177 -3292577 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 21 0 0 0 chr15 82404585 82404606 -3291148 + AT_rich Low_complexity Low_complexity 1 21 0 355 281 21 10 chr15 82404688 82404784 -3290970 - L2 LINE L2 -3 3310 3214 307 314 24 47 chr15 82404990 82405159 -3290595 - MIR SINE MIR -21 241 77 249 33 0 0 chr15 82406388 82406420 -3289334 + (TA)n Simple_repeat Simple_repeat 1 62 0 249 33 0 0 chr15 82406420 82406450 -3289304 + (TA)n Simple_repeat Simple_repeat 2 31 0 180 282 0 0 chr15 82406530 82406569 -3289185 - L2 LINE L2 -74 3198 3160 2313 121 7 80 chr15 82406637 82407052 -3288702 - Tigger2 DNA MER2_type 0 2718 2334 1983 114 55 3 chr15 82407273 82407563 -3288191 + AluSq SINE Alu 1 305 -8 978 152 35 30 chr15 82407732 82407929 -3287825 - THE1C LTR MaLR 0 375 178 943 210 49 15 chr15 82407951 82408156 -3287598 - THE1C LTR MaLR -163 212 1 1587 176 7 35 chr15 82408487 82408804 -3286950 - AluJo SINE Alu 0 309 1 2069 130 6 22 chr15 82409022 82409338 -3286416 + AluSx SINE Alu 1 311 -1 198 91 0 0 chr15 82409354 82409387 -3286367 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 530 202 85 0 chr15 82409566 82409660 -3286094 + MER45 DNA AcHobo 1 102 -1479 3660 82 2 0 chr15 82409660 82410151 -3285603 - L1PA10 LINE L1 -3 6165 5674 268 394 15 0 chr15 82412275 82412412 -3283342 + MIR SINE MIR 18 156 -106 244 257 27 0 chr15 82412418 82412492 -3283262 + LTR33 LTR ERVL 3 78 -443 695 199 12 30 chr15 82412648 82412814 -3282940 + LTR33 LTR ERVL 359 521 0 353 213 0 64 chr15 82412814 82412908 -3282846 + MIR SINE MIR 162 249 -13 341 318 7 52 chr15 82412933 82413087 -3282667 - MIR3 SINE MIR -45 163 17 189 107 0 0 chr15 82414611 82414639 -3281115 + (TG)n Simple_repeat Simple_repeat 1 28 0 2281 75 3 17 chr15 82414979 82415274 -3280480 + AluY SINE Alu 1 291 -20 325 284 71 33 chr15 82415478 82415661 -3280093 - L1ME LINE L1 -334 5787 5598 27 81 0 0 chr15 82415805 82415867 -3279887 + AT_rich Low_complexity Low_complexity 1 62 0 213 308 13 13 chr15 82416058 82416136 -3279618 + CT-rich Low_complexity Low_complexity 3 80 0 22 56 0 0 chr15 82416583 82416619 -3279135 + AT_rich Low_complexity Low_complexity 1 36 0 908 280 94 39 chr15 82416666 82417663 -3278091 - L1ME3A LINE L1 -208 5962 4912 239 192 96 14 chr15 82417751 82417824 -3277930 - L1ME3A LINE L1 -1917 4229 4151 1838 177 0 3 chr15 82417824 82418162 -3277592 - AluJb SINE Alu 0 337 1 321 282 98 81 chr15 82418243 82418715 -3277039 - L1ME3A LINE L1 -1996 4150 3688 2333 60 0 0 chr15 82418715 82418998 -3276756 + AluY SINE Alu 1 283 -28 243 0 0 0 chr15 82418998 82419025 -3276729 + (CA)n Simple_repeat Simple_repeat 2 28 0 321 282 98 81 chr15 82419025 82419221 -3276533 - L1ME3A LINE L1 -2457 3689 3469 621 106 0 0 chr15 82419264 82419349 -3276405 - AluJ/FLAM SINE Alu -225 87 3 2436 89 0 3 chr15 82421196 82421510 -3274244 + AluSp SINE Alu 1 313 0 657 199 242 55 chr15 82421705 82422031 -3273723 - MLT1L LTR MaLR -4 611 225 477 285 15 68 chr15 82422251 82422476 -3273278 - MIR SINE MIR -16 246 40 288 67 89 0 chr15 82424536 82424581 -3271173 + MADE1 DNA Mariner 32 80 0 21 36 0 0 chr15 82424600 82424628 -3271126 + AT_rich Low_complexity Low_complexity 1 28 0 240 35 0 0 chr15 82424684 82424713 -3271041 + (TG)n Simple_repeat Simple_repeat 1 29 0 2400 66 7 0 chr15 82425225 82425528 -3270226 - AluY SINE Alu -6 305 1 2409 70 7 3 chr15 82425987 82426286 -3269468 - AluSx SINE Alu -11 301 2 442 279 52 22 chr15 82426778 82426914 -3268840 + MIR3 SINE MIR 20 159 -49 905 201 0 0 chr15 82427725 82427914 -3267840 - AluJb SINE Alu 0 312 141 29 0 0 0 chr15 82427921 82427950 -3267804 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 82429136 82429160 -3266594 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 82430452 82430473 -3265281 + AT_rich Low_complexity Low_complexity 1 21 0 1027 80 34 11 chr15 82431969 82432145 -3263609 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr15 82433627 82433650 -3262104 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 82434752 82434772 -3260982 + (A)n Simple_repeat Simple_repeat 1 20 0 1177 192 45 10 chr15 82436549 82436861 -3258893 + MER33 DNA MER1_type 2 324 0 1073 167 22 45 chr15 82437237 82437531 -3258223 - AluSx SINE Alu 0 308 21 1499 134 34 7 chr15 82438162 82438431 -3257323 - AluSx SINE Alu -36 276 1 381 328 86 0 chr15 82438436 82438564 -3257190 - MIR SINE MIR -110 152 14 2746 234 87 66 chr15 82438571 82439770 -3255984 + MER69B DNA AcHobo 3 1226 0 24 85 0 0 chr15 82442121 82442180 -3253574 + AT_rich Low_complexity Low_complexity 1 59 0 183 129 0 0 chr15 82442501 82442532 -3253222 + (TA)n Simple_repeat Simple_repeat 1 31 0 2185 107 3 3 chr15 82442537 82442827 -3252927 - AluSx SINE Alu -21 291 2 3070 110 43 4 chr15 82444895 82445360 -3250394 + L1PA16 LINE L1 5683 6165 -1 649 326 154 18 chr15 82449341 82449724 -3246030 + LTR16A LTR ERVL 16 450 0 718 163 32 0 chr15 82449971 82450094 -3245660 - FLAM_C SINE Alu -16 127 1 614 285 27 27 chr15 82450097 82450318 -3245436 + HERV16 LTR ERVL 275 495 -4501 1417 293 108 18 chr15 82450379 82450880 -3244874 + HERV16 LTR ERVL 590 1135 -3861 745 284 29 10 chr15 82451042 82451250 -3244504 - MLT1E2 LTR MaLR 0 593 382 348 323 0 0 chr15 82451336 82451435 -3244319 + ERVL LTR ERVL 4556 4654 -1110 348 292 71 24 chr15 82451511 82451679 -3244075 + ERVL LTR ERVL 4780 4955 -699 859 301 59 12 chr15 82451789 82452111 -3243643 + LTR16A LTR ERVL 16 352 -98 23 68 0 0 chr15 82452409 82452453 -3243301 + AT_rich Low_complexity Low_complexity 1 44 0 310 316 35 0 chr15 82453416 82453530 -3242224 + L1ME4a LINE L1 5798 5915 -206 341 308 8 0 chr15 82453539 82453656 -3242098 - L1ME LINE L1 -335 5786 5669 4920 256 42 29 chr15 82453934 82454399 -3241355 - L1PA12 LINE L1 -4741 2843 2385 195 69 0 0 chr15 82454399 82454428 -3241326 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4920 256 42 29 chr15 82454428 82455728 -3240026 - L1PA12 LINE L1 -5199 2385 1 225 0 0 0 chr15 82456065 82456090 -3239664 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7506 31 6 0 chr15 82456091 82457566 -3238188 - L1PA3 LINE L1 -3 6152 4674 840 230 0 28 chr15 82457572 82457803 -3237951 - MLT1E2 LTR MaLR -288 217 1 22 0 0 0 chr15 82460153 82460175 -3235579 + AT_rich Low_complexity Low_complexity 1 22 0 250 240 0 0 chr15 82460601 82460651 -3235103 + L2 LINE L2 3210 3259 -13 877 159 0 79 chr15 82461103 82461292 -3234462 - MER20 DNA MER1_type 0 219 46 1747 187 33 30 chr15 82461313 82461677 -3234077 - MLT1A1 LTR MaLR 0 365 1 479 183 21 0 chr15 82461677 82461770 -3233984 - MLT1A1-int LTR MaLR 0 1735 1641 4556 219 32 15 chr15 82461776 82462733 -3233021 - MLT1A1-int LTR MaLR -761 974 1 1667 194 36 31 chr15 82462733 82463093 -3232661 - MLT1A1 LTR MaLR 0 365 4 693 297 50 38 chr15 82463246 82463485 -3232269 - MIR SINE MIR 0 262 21 192 292 191 38 chr15 82463868 82463987 -3231767 + MIR SINE MIR 20 119 -143 5962 132 57 69 chr15 82463987 82465231 -3230523 - Tigger3b DNA MER2_type -1 1230 2 192 292 191 38 chr15 82465231 82465320 -3230434 + MIR SINE MIR 119 260 -2 21 57 0 0 chr15 82465327 82465362 -3230392 + AT_rich Low_complexity Low_complexity 1 35 0 201 208 0 21 chr15 82466179 82466227 -3229527 + (TA)n Simple_repeat Simple_repeat 2 48 0 342 301 97 26 chr15 82466336 82466710 -3229044 - L1MC/D LINE L1 -297 5824 5437 313 344 166 31 chr15 82467146 82467693 -3228061 - L2 LINE L2 -705 2609 1989 23 0 0 0 chr15 82467695 82467718 -3228036 + AT_rich Low_complexity Low_complexity 1 23 0 2011 95 4 0 chr15 82467723 82467987 -3227767 + AluSc SINE Alu 1 265 -44 519 301 77 42 chr15 82468589 82469110 -3226644 - L1ME3A LINE L1 -343 5827 5289 3264 210 32 19 chr15 82469277 82469476 -3226278 - L1MB8 LINE L1 -6 6172 5974 1551 244 139 16 chr15 82469476 82470130 -3225624 - L1MC4 LINE L1 -777 5369 5243 262 59 0 0 chr15 82470132 82470166 -3225588 - MLT2B2 LTR ERVL -15 538 505 2106 199 49 42 chr15 82470210 82470682 -3225072 - MLT2B2 LTR ERVL -40 475 1 1519 162 72 64 chr15 82470682 82471070 -3224684 - L1MC4 LINE L1 -890 5256 4866 804 116 6 92 chr15 82471135 82471299 -3224455 + L1PA8 LINE L1 6023 6172 0 238 262 48 0 chr15 82471538 82471622 -3224132 - L1MB8 LINE L1 -1071 5075 4988 427 340 37 51 chr15 82473600 82473894 -3221860 + HAL1b LINE L1 517 806 -542 1543 211 3 3 chr15 82474260 82474568 -3221186 + AluJo SINE Alu 3 310 -2 28070 79 4 43 chr15 82474831 82479472 -3216282 + L1P3 LINE L1 1331 5787 -385 2312 72 0 20 chr15 82479473 82479777 -3215977 + AluY SINE Alu 1 298 -13 1056 241 38 3 chr15 82479782 82480127 -3215627 + L1M4 LINE L1 2912 3268 -2878 876 302 38 7 chr15 82480131 82480558 -3215196 + L1M4 LINE L1 4068 4507 -1639 1396 62 0 0 chr15 82480595 82480772 -3214982 - L1PA7 LINE L1 -5 6149 5973 251 266 26 52 chr15 82480968 82481160 -3214594 + L1M4 LINE L1 2836 3022 -3124 43859 41 2 1 chr15 82481236 82487384 -3208370 - L1PA3 LINE L1 -4 6151 1 291 68 0 23 chr15 82487401 82487445 -3208309 + L1PB4 LINE L1 5441 5483 -673 1342 199 12 0 chr15 82487447 82487693 -3208061 + AluJo SINE Alu 38 286 -26 3785 156 23 0 chr15 82487712 82488361 -3207393 + L1PB4 LINE L1 5450 6113 -43 3133 238 46 56 chr15 82488590 82490226 -3205528 + L1MC3 LINE L1 9 1661 -5084 275 0 29 0 chr15 82490226 82490261 -3205493 + (TTA)n Simple_repeat Simple_repeat 3 38 0 16060 37 5 0 chr15 82490261 82492963 -3202791 - L1PA4 LINE L1 -18 6137 3427 3133 238 46 56 chr15 82492963 82493589 -3202165 + L1MC3 LINE L1 1660 2291 -4454 2278 92 0 0 chr15 82493589 82493881 -3201873 + AluY SINE Alu 1 292 -19 198 0 0 0 chr15 82493881 82493903 -3201851 + (TA)n Simple_repeat Simple_repeat 2 23 0 3133 238 46 56 chr15 82493903 82494181 -3201573 + L1MC3 LINE L1 2289 2735 -4010 1376 253 67 0 chr15 82494232 82494679 -3201075 + L1MC3 LINE L1 2847 3323 -3241 13840 157 28 46 chr15 82494706 82497578 -3198176 + L1P LINE L1 12 2829 -3317 6431 174 33 32 chr15 82497589 82498862 -3196892 + L1P LINE L1 11 1284 -4862 4128 230 65 16 chr15 82498993 82500658 -3195096 + L1MC3 LINE L1 4945 5821 -743 313 291 89 45 chr15 82500723 82500902 -3194852 + L1M4 LINE L1 5271 5457 -717 687 77 39 0 chr15 82501028 82501132 -3194622 + L1PB1 LINE L1 6042 6149 -2 26 30 0 0 chr15 82501511 82501544 -3194210 + AT_rich Low_complexity Low_complexity 1 33 0 364 236 110 24 chr15 82502606 82502733 -3193021 - L2 LINE L2 -88 3225 3088 189 393 47 0 chr15 82503949 82504056 -3191698 + L2 LINE L2 2903 3014 -258 218 220 20 0 chr15 82504658 82504708 -3191046 + CT-rich Low_complexity Low_complexity 2 52 0 2329 88 7 0 chr15 82505508 82505805 -3189949 + AluY SINE Alu 1 299 -12 204 365 43 17 chr15 82506181 82506296 -3189458 + MIR3 SINE MIR 10 127 -81 270 0 0 0 chr15 82506355 82506385 -3189369 + (TA)n Simple_repeat Simple_repeat 1 30 0 451 346 54 8 chr15 82507395 82507635 -3188119 - L2 LINE L2 -1305 2009 1759 2180 105 3 0 chr15 82507802 82508097 -3187657 + AluSq SINE Alu 1 296 -17 3658 42 7 0 chr15 82508281 82508729 -3187025 + L1PA5 LINE L1 5697 6147 -7 309 171 26 43 chr15 82509510 82509664 -3186090 + (TTATA)n Simple_repeat Simple_repeat 1 151 0 348 282 160 0 chr15 82510161 82510292 -3185462 + HAL1 LINE L1 1454 1605 -902 21 0 0 0 chr15 82511152 82511173 -3184581 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr15 82511479 82511509 -3184245 + (CA)n Simple_repeat Simple_repeat 2 31 0 193 291 222 17 chr15 82514007 82514124 -3181630 + MIR SINE MIR 22 162 -100 2544 181 50 2 chr15 82514132 82514651 -3181103 - L1MC3 LINE L1 -3 7782 7239 576 146 9 0 chr15 82514805 82514915 -3180839 + L1MA10 LINE L1 6223 6333 -1 237 237 92 0 chr15 82515290 82515366 -3180388 + L2 LINE L2 3231 3313 0 26 0 0 0 chr15 82515394 82515420 -3180334 + AT_rich Low_complexity Low_complexity 1 26 0 23 86 0 0 chr15 82518194 82518252 -3177502 + AT_rich Low_complexity Low_complexity 1 58 0 269 336 55 20 chr15 82518968 82519114 -3176640 + MIR3 SINE MIR 34 184 -24 274 327 36 36 chr15 82521786 82522009 -3173745 + L2 LINE L2 2848 3070 -202 2085 137 0 0 chr15 82522009 82522339 -3173415 - AluSx SINE Alu 0 330 1 374 274 59 0 chr15 82522464 82522566 -3173188 + L2 LINE L2 3197 3304 -9 260 257 0 27 chr15 82523025 82523099 -3172655 + MIR SINE MIR 92 163 -99 192 245 31 102 chr15 82523111 82523209 -3172545 + L2 LINE L2 3223 3313 0 456 250 19 9 chr15 82524326 82524434 -3171320 + MIR SINE MIR 119 227 -35 22 0 0 0 chr15 82525340 82525362 -3170392 + AT_rich Low_complexity Low_complexity 1 22 0 6387 24 1 0 chr15 82526245 82526989 -3168765 - L1PA4 LINE L1 -4 6151 5407 1880 139 60 3 chr15 82527332 82527649 -3168105 - MER2 DNA MER2_type -10 335 1 243 0 0 0 chr15 82529534 82529561 -3166193 + (CA)n Simple_repeat Simple_repeat 2 28 0 651 286 36 18 chr15 82530094 82530318 -3165436 + MIR SINE MIR 34 261 -1 216 182 0 0 chr15 82531018 82531062 -3164692 + T-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr15 82532904 82532925 -3162829 + AT_rich Low_complexity Low_complexity 1 21 0 453 97 0 0 chr15 82535033 82535105 -3160649 + (TA)n Simple_repeat Simple_repeat 2 73 0 193 290 0 29 chr15 82535557 82535626 -3160128 - MIR SINE MIR -91 171 105 189 0 0 0 chr15 82536225 82536246 -3159508 + (A)n Simple_repeat Simple_repeat 1 21 0 2054 170 46 12 chr15 82536751 82537162 -3158592 - L1MC3 LINE L1 0 7785 7361 336 295 143 0 chr15 82537164 82537269 -3158485 - MIR SINE MIR -70 192 73 293 315 22 11 chr15 82538054 82538146 -3157608 + MER5B DNA MER1_type 37 129 -49 188 365 40 0 chr15 82538228 82538302 -3157452 - L2 LINE L2 -52 3220 3144 377 296 252 0 chr15 82538732 82538867 -3156887 - MLT1G1 LTR MaLR -45 550 382 2647 96 6 3 chr15 82539161 82539524 -3156230 - THE1B LTR MaLR 0 364 1 228 149 0 21 chr15 82539626 82539673 -3156081 - L1MC4 LINE L1 -1339 6703 6658 247 313 24 0 chr15 82539706 82539789 -3155965 - MLT1F1 LTR MaLR -456 111 27 491 231 100 44 chr15 82540084 82540244 -3155510 - MIR SINE MIR -66 196 28 2516 45 3 7 chr15 82540396 82540705 -3155049 - AluY SINE Alu -3 308 1 243 250 0 0 chr15 82542166 82542218 -3153536 + MIR SINE MIR 102 153 -109 5752 119 21 7 chr15 82542518 82543545 -3152209 - L1PA16 LINE L1 -11 6155 5121 316 275 85 58 chr15 82543839 82544028 -3151726 + MIR SINE MIR 69 262 0 288 315 34 60 chr15 82545349 82545498 -3150256 - MIR SINE MIR -6 256 112 184 269 201 15 chr15 82545965 82546099 -3149655 - MIR3 SINE MIR -23 185 27 210 118 0 0 chr15 82546295 82546329 -3149425 + (CTA)n Simple_repeat Simple_repeat 3 36 0 813 269 8 67 chr15 82546747 82547015 -3148739 + MIR SINE MIR 3 254 -8 248 321 98 9 chr15 82547701 82547813 -3147941 - MIR SINE MIR -121 141 20 302 218 55 9 chr15 82548122 82548232 -3147522 - MER113 DNA MER1_type? -372 149 35 1448 198 20 23 chr15 82548245 82548588 -3147166 - Charlie4a DNA MER1_type -119 389 48 248 341 12 0 chr15 82548616 82548698 -3147056 + MIR SINE MIR 39 121 -141 18161 50 12 3 chr15 82550573 82553692 -3142062 - L1PA5 LINE L1 -1 6153 3014 6169 50 14 1 chr15 82553692 82554493 -3141261 + L1PA5 LINE L1 2177 2987 -3159 237 219 19 9 chr15 82554855 82554960 -3140794 + (TA)n Simple_repeat Simple_repeat 2 107 0 297 354 31 16 chr15 82555245 82555372 -3140382 - L1MEd LINE L1 -5765 354 226 411 38 0 0 chr15 82555702 82555755 -3139999 + (CA)n Simple_repeat Simple_repeat 2 54 0 600 211 26 20 chr15 82556546 82556698 -3139056 + MIR SINE MIR 110 262 0 12032 31 0 1 chr15 82557376 82559583 -3136171 - L1PA3 LINE L1 0 6155 3950 21 0 0 0 chr15 82559967 82559988 -3135766 + AT_rich Low_complexity Low_complexity 1 21 0 1402 242 122 27 chr15 82560032 82560508 -3135246 - L1MD3 LINE L1 -10 7985 7465 639 91 0 20 chr15 82560512 82560611 -3135143 - L1PB3 LINE L1 -1 6153 6057 1912 169 122 10 chr15 82560613 82560998 -3134756 - MSTA LTR MaLR 0 428 1 8983 139 4 51 chr15 82560998 82562634 -3133120 - MSTA-int LTR MaLR 0 1580 3 1682 161 177 11 chr15 82562636 82563003 -3132751 - MSTA LTR MaLR 0 428 1 4939 165 40 26 chr15 82563016 82564824 -3130930 - L1PB3 LINE L1 -90 6064 4224 2849 229 39 64 chr15 82564824 82566321 -3129433 - L1MC4 LINE L1 -655 7387 5923 430 291 126 71 chr15 82567431 82567909 -3127845 + L2 LINE L2 2400 2903 -411 304 301 39 10 chr15 82568073 82568176 -3127578 + L2 LINE L2 3208 3313 0 188 284 125 11 chr15 82569338 82569426 -3126328 - MIR SINE MIR -46 216 119 789 279 73 5 chr15 82570619 82570838 -3124916 - MIR SINE MIR -25 237 4 640 143 25 28 chr15 82571386 82571542 -3124212 - MSTA LTR MaLR 0 428 221 41912 38 25 2 chr15 82571542 82577544 -3118210 - L1PA2 LINE L1 -11 6144 1 1493 179 8 0 chr15 82577545 82577796 -3117958 - MSTA LTR MaLR -174 254 2 1581 272 82 18 chr15 82577797 82578308 -3117446 + MLT1G1 LTR MaLR 25 568 -27 187 283 33 0 chr15 82578590 82578650 -3117104 + L3b LINE CR1 1310 1371 -212 29 47 0 0 chr15 82579186 82579229 -3116525 + AT_rich Low_complexity Low_complexity 1 43 0 27298 124 16 74 chr15 82579927 82585089 -3110665 + L1P LINE L1 12 4875 -1271 1340 128 0 11 chr15 82585089 82585347 -3110407 - GSAT Satellite centromeric 0 255 1 6949 52 12 1 chr15 82585347 82586592 -3109162 + L1PA7 LINE L1 4900 6154 0 993 166 125 30 chr15 82587553 82587848 -3107906 + MER33 DNA MER1_type 2 324 0 445 239 189 35 chr15 82587848 82588049 -3107705 + MIR SINE MIR 17 248 -14 194 330 165 10 chr15 82588056 82588153 -3107601 + MIR SINE MIR 31 142 -66 476 252 17 0 chr15 82588220 82588335 -3107419 + MIR3 SINE MIR 91 207 -1 182 376 0 12 chr15 82590795 82590880 -3104874 + MIR SINE MIR 117 200 -62 21 0 0 0 chr15 82590966 82590987 -3104767 + AT_rich Low_complexity Low_complexity 1 21 0 424 296 17 41 chr15 82591030 82591202 -3104552 - MIR SINE MIR -73 189 22 1802 150 158 21 chr15 82591243 82591617 -3104137 - MSTA LTR MaLR 0 428 4 22 56 0 0 chr15 82592081 82592117 -3103637 + AT_rich Low_complexity Low_complexity 1 36 0 247 62 0 42 chr15 82592394 82592442 -3103312 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr15 82593569 82593591 -3102163 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 82593880 82593905 -3101849 + AT_rich Low_complexity Low_complexity 1 25 0 249 33 0 0 chr15 82594538 82594568 -3101186 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 378 0 0 0 chr15 82594567 82594609 -3101145 + (CA)n Simple_repeat Simple_repeat 1 42 0 181 107 0 0 chr15 82594812 82594840 -3100914 + MIR SINE MIR 110 137 -71 490 263 0 8 chr15 82594914 82595047 -3100707 + MER94 DNA DNA 1 132 -2 682 171 36 0 chr15 82595463 82595574 -3100180 + FLAM_C SINE Alu 2 116 -17 363 73 0 0 chr15 82595574 82595629 -3100125 + (GA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr15 82595811 82595834 -3099920 + AT_rich Low_complexity Low_complexity 1 23 0 3835 94 63 0 chr15 82596476 82596802 -3098952 - L1PB1 LINE L1 -1 6150 5771 231 36 0 0 chr15 82596802 82596830 -3098924 + (TG)n Simple_repeat Simple_repeat 2 29 0 3835 94 63 0 chr15 82596830 82597076 -3098678 - L1PB1 LINE L1 -380 5771 5542 815 214 22 16 chr15 82597576 82597758 -3097996 - AluJo SINE Alu -23 289 107 4317 134 31 53 chr15 82597985 82598799 -3096955 + L1PB4 LINE L1 5360 6155 -1 21 0 0 0 chr15 82599094 82599115 -3096639 + AT_rich Low_complexity Low_complexity 1 21 0 42652 35 22 1 chr15 82599173 82605198 -3090556 + L1PA3 LINE L1 1 6155 0 201 94 0 75 chr15 82605585 82605638 -3090116 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 286 338 30 55 chr15 82607009 82607210 -3088544 - LTR16A LTR ERVL -9 441 246 28 61 0 0 chr15 82607675 82607724 -3088030 + AT_rich Low_complexity Low_complexity 1 49 0 322 336 113 31 chr15 82607769 82608061 -3087693 - L1ME LINE L1 -454 5667 5352 38 0 0 0 chr15 82608291 82608329 -3087425 + AT_rich Low_complexity Low_complexity 1 38 0 279 0 0 0 chr15 82608660 82608691 -3087063 + (TA)n Simple_repeat Simple_repeat 2 32 0 322 290 0 21 chr15 82608691 82608784 -3086970 - L1MC4 LINE L1 -1339 6703 6613 2220 205 66 12 chr15 82609201 82609698 -3086056 - L1ME1 LINE L1 -15 6151 5628 1243 119 0 0 chr15 82610049 82610217 -3085537 - AluSg/x SINE Alu -24 288 121 2031 133 0 0 chr15 82610268 82610547 -3085207 - AluSg SINE Alu -31 279 1 22 35 0 0 chr15 82610552 82610581 -3085173 + AT_rich Low_complexity Low_complexity 1 29 0 333 348 7 15 chr15 82610699 82610834 -3084920 - L2 LINE L2 0 3313 3180 195 69 0 0 chr15 82610838 82610867 -3084887 + (CA)n Simple_repeat Simple_repeat 2 30 0 645 322 33 0 chr15 82610969 82611180 -3084574 - L2 LINE L2 -1175 2139 1922 198 0 0 0 chr15 82611181 82611203 -3084551 + (TA)n Simple_repeat Simple_repeat 2 23 0 326 252 135 0 chr15 82611238 82611349 -3084405 - MIR SINE MIR -35 227 102 2363 62 0 0 chr15 82611574 82611863 -3083891 - AluY SINE Alu -21 290 2 329 239 145 10 chr15 82612021 82612194 -3083560 - L1 LINE L1 -2212 3934 3743 1103 205 114 7 chr15 82612995 82613268 -3082486 - AluJo SINE Alu 0 302 1 29 28 0 0 chr15 82613531 82613567 -3082187 + AT_rich Low_complexity Low_complexity 1 36 0 929 92 23 0 chr15 82613862 82613993 -3081761 - L1PA8 LINE L1 -6 6166 6033 269 29 0 0 chr15 82613995 82614029 -3081725 + L1PA8 LINE L1 6005 6038 -134 30 27 0 0 chr15 82614880 82614917 -3080837 + AT_rich Low_complexity Low_complexity 1 37 0 223 304 116 27 chr15 82615558 82615670 -3080084 + L2 LINE L2 2896 3017 -255 186 284 15 45 chr15 82615861 82615928 -3079826 + L2 LINE L2 3249 3313 0 4769 175 27 15 chr15 82616498 82618012 -3077742 - L1PB4 LINE L1 -7 6149 4609 231 346 29 59 chr15 82618292 82618391 -3077363 + L2 LINE L2 2948 3043 -229 1588 181 10 16 chr15 82618391 82618705 -3077049 + AluJo SINE Alu 1 312 0 231 346 29 59 chr15 82618705 82618741 -3077013 + L2 LINE L2 3043 3079 -193 22 0 0 0 chr15 82620144 82620166 -3075588 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 82620562 82620589 -3075165 + AT_rich Low_complexity Low_complexity 1 27 0 2048 158 0 0 chr15 82621582 82621880 -3073874 - AluSg SINE Alu -12 298 1 478 286 71 43 chr15 82622197 82622477 -3073277 - Tigger8 DNA MER2_type -91 575 288 719 183 0 8 chr15 82622555 82622681 -3073073 + FLAM_C SINE Alu 1 125 -8 789 188 0 0 chr15 82622799 82622937 -3072817 + FLAM_C SINE Alu 6 143 0 2287 122 42 3 chr15 82623740 82624094 -3071660 + THE1C LTR MaLR 8 375 0 10122 113 48 13 chr15 82624094 82625620 -3070134 + THE1C-int LTR MaLR 1 1580 0 1828 114 16 2 chr15 82625620 82625930 -3069824 + THE1C LTR MaLR 1 375 0 993 233 37 0 chr15 82626339 82626554 -3069200 + MER58A DNA MER1_type 1 223 -1 23 0 0 0 chr15 82628275 82628298 -3067456 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr15 82630615 82630654 -3065100 + AT_rich Low_complexity Low_complexity 1 39 0 300 316 138 23 chr15 82631052 82631228 -3064526 + MIR SINE MIR 20 230 -32 2029 133 4 0 chr15 82631228 82631529 -3064225 + AluSg SINE Alu 1 302 0 300 316 138 23 chr15 82631529 82631567 -3064187 + MIR SINE MIR 230 262 0 608 268 0 6 chr15 82632527 82632706 -3063048 - MER104 DNA MER2_type -2 178 1 264 304 14 0 chr15 82633133 82633271 -3062483 - L1MEc LINE L1 -4620 1776 1637 2292 143 17 6 chr15 82633305 82633661 -3062093 - THE1B LTR MaLR 0 364 5 10322 118 14 26 chr15 82633661 82635260 -3060494 - THE1B-int LTR MaLR 0 1580 1 2414 116 17 8 chr15 82635260 82635621 -3060133 - THE1B LTR MaLR 0 364 1 1569 162 179 14 chr15 82635633 82635997 -3059757 + MSTA LTR MaLR 5 428 0 2766 264 14 7 chr15 82636177 82636896 -3058858 + L1MEc LINE L1 256 979 -5417 813 206 20 36 chr15 82636910 82637157 -3058597 + L1MB7 LINE L1 4987 5229 -917 7044 53 7 0 chr15 82637159 82638814 -3056940 - L1PA5 LINE L1 0 6154 4492 21897 79 8 0 chr15 82638815 82641730 -3054024 - L1PA5 LINE L1 -3210 2936 1 367 145 12 24 chr15 82641730 82641813 -3053941 + L1MB7 LINE L1 5221 5302 -844 * 3411 168 43 6 chr15 82641809 82643357 -3052397 + L1MA4 LINE L1 4644 6293 -7 1736 196 30 2 chr15 82643366 82643776 -3051978 + L1MB7 LINE L1 5276 5697 -487 340 212 12 0 chr15 82643765 82643850 -3051904 + L1MB7 LINE L1 6099 6184 0 * 1008 270 123 32 chr15 82643883 82644572 -3051182 + L1ME2 LINE L1 1064 1815 -4581 32035 30 2 1 chr15 82644574 82649207 -3046547 + L1PA3 LINE L1 1519 6155 0 6232 243 79 20 chr15 82649243 82650889 -3044865 + L1ME2 LINE L1 1816 3656 -2559 937 245 19 9 chr15 82650889 82651105 -3044649 - MER20 DNA MER1_type 0 219 2 6232 243 79 20 chr15 82651105 82652148 -3043606 + L1ME2 LINE L1 3656 4636 -1579 1183 181 81 40 chr15 82652146 82652444 -3043310 + L1ME2 LINE L1 5677 5986 -247 * 64 62 0 0 chr15 82652645 82652758 -3042996 + AT_rich Low_complexity Low_complexity 1 113 0 860 246 5 0 chr15 82653814 82654009 -3041745 - MLT1B LTR MaLR 0 390 195 485 110 40 0 chr15 82654046 82654146 -3041608 + GA-rich Low_complexity Low_complexity 1 104 0 760 201 63 17 chr15 82654146 82654320 -3041434 - MLT1B LTR MaLR -208 182 1 2178 118 48 28 chr15 82654995 82655352 -3040402 - THE1B LTR MaLR 0 364 1 10765 98 7 47 chr15 82655353 82656983 -3038771 - THE1B-int LTR MaLR -1 1579 14 2002 135 51 25 chr15 82656991 82657346 -3038408 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr15 82658830 82658852 -3036902 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 82659308 82659330 -3036424 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 82660161 82660192 -3035562 + AT_rich Low_complexity Low_complexity 1 31 0 346 289 16 16 chr15 82661525 82661646 -3034108 - L2 LINE L2 -9 3304 3184 1364 329 110 31 chr15 82661768 82662706 -3033048 - L2 LINE L2 -343 2971 1960 180 0 0 0 chr15 82663170 82663190 -3032564 + (A)n Simple_repeat Simple_repeat 1 20 0 999 306 246 24 chr15 82663425 82664261 -3031493 - L2 LINE L2 -3 3310 2302 350 256 84 118 chr15 82665149 82665540 -3030214 + L1ME4a LINE L1 5500 5877 -244 26 113 0 0 chr15 82666092 82666216 -3029538 + AT_rich Low_complexity Low_complexity 1 124 0 276 229 51 85 chr15 82667035 82667153 -3028601 - MER5A DNA MER1_type -15 174 61 * 299 280 51 59 chr15 82667048 82667166 -3028588 + MER5A DNA MER1_type 38 154 -35 3213 137 15 22 chr15 82667306 82667854 -3027900 - L1MC1 LINE L1 0 6333 5790 303 127 0 16 chr15 82667866 82667929 -3027825 + L1PA16 LINE L1 6098 6159 -7 668 175 69 8 chr15 82667943 82668088 -3027666 - L1MC1 LINE L1 -386 5798 5646 1126 175 47 59 chr15 82669184 82669524 -3026230 + MER33 DNA MER1_type 1 324 0 199 304 61 52 chr15 82670333 82670381 -3025373 - MIR SINE MIR -55 207 161 2710 26 0 6 chr15 82670381 82670693 -3025061 + AluY SINE Alu 1 310 -1 199 304 61 52 chr15 82670693 82670759 -3024995 - MIR SINE MIR -101 161 92 1626 84 0 0 chr15 82671321 82671523 -3024231 + AluY SINE Alu 89 290 -21 21 36 0 0 chr15 82671524 82671552 -3024202 + AT_rich Low_complexity Low_complexity 1 28 0 41 72 0 0 chr15 82672269 82672352 -3023402 + AT_rich Low_complexity Low_complexity 1 83 0 191 302 0 0 chr15 82673930 82673973 -3021781 - L2 LINE L2 -61 3211 3169 1410 130 9 9 chr15 82674008 82674239 -3021515 + L1PA16 LINE L1 6 236 -5639 * 15993 169 10 25 chr15 82674235 82677545 -3018209 + L1PA16 LINE L1 854 4173 -2288 4100 155 35 4 chr15 82677523 82678239 -3017515 + L1PA16 LINE L1 5734 6471 -10 * 5505 111 27 4 chr15 82678249 82680468 -3015286 - L1PA8 LINE L1 -12 6160 3723 8374 209 26 19 chr15 82680484 82682874 -3012880 - L1P4 LINE L1 -679 5487 3081 200 324 14 14 chr15 82683222 82683293 -3012461 + L2 LINE L2 3015 3085 -187 415 335 124 0 chr15 82683565 82683783 -3011971 + MIR SINE MIR 2 246 -16 238 367 17 8 chr15 82684920 82685040 -3010714 - L2 LINE L2 -234 3038 2918 693 260 82 43 chr15 82685060 82685364 -3010390 - L2 LINE L2 -685 2629 2314 503 264 32 53 chr15 82685454 82685700 -3010054 - HAL1 LINE L1 -865 1642 1402 21 57 0 0 chr15 82685705 82685740 -3010014 + AT_rich Low_complexity Low_complexity 1 35 0 461 333 63 44 chr15 82685945 82686215 -3009539 - HAL1 LINE L1 -1403 1104 830 276 53 0 0 chr15 82686633 82686671 -3009083 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6742 20 0 0 chr15 82686678 82687445 -3008309 - L1PA3 LINE L1 -29 6126 5360 2127 34 0 0 chr15 82687441 82687706 -3008048 + L1PA3 LINE L1 5077 5341 -805 * 1385 204 88 0 chr15 82687731 82688013 -3007741 - AluJb SINE Alu 0 307 3 244 300 7 71 chr15 82688174 82688314 -3007440 - L2 LINE L2 -985 2329 2199 1784 169 35 27 chr15 82690424 82690796 -3004958 - THE1C LTR MaLR 0 375 1 1638 187 47 7 chr15 82690965 82691265 -3004489 + AluJo SINE Alu 1 312 0 400 351 66 25 chr15 82692113 82692588 -3003166 - L2 LINE L2 -218 3054 2549 338 317 35 36 chr15 82692614 82692868 -3002886 + L1ME3A LINE L1 5618 5875 -295 24 32 0 0 chr15 82692912 82692943 -3002811 + AT_rich Low_complexity Low_complexity 1 31 0 637 176 46 0 chr15 82693202 82693310 -3002444 - Tigger1 DNA MER2_type 0 2418 2306 21 57 0 0 chr15 82693430 82693465 -3002289 + AT_rich Low_complexity Low_complexity 1 35 0 13647 132 10 40 chr15 82693478 82693924 -3001830 - Tigger1 DNA MER2_type -148 2270 1812 2126 122 17 0 chr15 82693924 82694220 -3001534 - AluSq SINE Alu -12 301 1 13647 132 10 40 chr15 82694220 82696112 -2999642 - Tigger1 DNA MER2_type -606 1812 2 703 320 89 64 chr15 82696200 82696516 -2999238 - L2 LINE L2 -799 2515 2208 1347 237 106 38 chr15 82696516 82696989 -2998765 - MLT1D LTR MaLR 0 505 1 703 320 89 64 chr15 82696989 82697450 -2998304 - L2 LINE L2 -1106 2208 1719 445 364 96 45 chr15 82697642 82698236 -2997518 - L2 LINE L2 -1511 1803 1180 624 324 34 0 chr15 82698344 82698551 -2997203 + MIR SINE MIR 47 260 -2 186 150 0 0 chr15 82698720 82698760 -2996994 + (TA)n Simple_repeat Simple_repeat 2 41 0 205 51 51 0 chr15 82698799 82698838 -2996916 + (TA)n Simple_repeat Simple_repeat 1 41 0 216 0 0 0 chr15 82699080 82699104 -2996650 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1394 193 25 102 chr15 82701051 82701337 -2994417 - MLT1A2 LTR MaLR -11 363 114 2155 146 75 39 chr15 82701337 82701748 -2994006 + MSTC LTR MaLR 3 428 0 1394 193 25 102 chr15 82701748 82701854 -2993900 - MLT1A2 LTR MaLR -260 114 1 633 221 33 44 chr15 82702051 82702232 -2993522 - L2 LINE L2 -17 3296 3118 30127 42 2 0 chr15 82703961 82708475 -2987279 + L1PA4 LINE L1 1636 6155 0 215 368 85 15 chr15 82709709 82709910 -2985844 + MIR SINE MIR 32 246 -16 256 296 0 0 chr15 82711462 82711533 -2984221 - MER112 DNA MER1_type -8 252 182 * 293 178 0 82 chr15 82711513 82711586 -2984168 - MER112 DNA MER1_type -193 67 1 2415 89 7 0 chr15 82711711 82712015 -2983739 - AluSc SINE Alu -1 308 3 439 266 22 7 chr15 82712199 82712338 -2983416 - MER69 DNA AcHobo -1 2525 2385 726 268 52 29 chr15 82712610 82712843 -2982911 + MIR SINE MIR 23 262 0 592 45 11 22 chr15 82713006 82713095 -2982659 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 385 198 0 0 chr15 82713317 82713403 -2982351 + L1PA13 LINE L1 1779 1864 -4923 229 229 38 15 chr15 82763598 82763729 -2932025 + (TA)n Simple_repeat Simple_repeat 2 135 0 326 296 226 0 chr15 82765684 82765843 -2929911 + MIR SINE MIR 68 262 0 343 270 36 45 chr15 82766455 82766566 -2929188 + L2 LINE L2 3154 3263 -9 195 359 55 23 chr15 82767145 82767273 -2928481 - L2 LINE L2 -16 3256 3125 886 148 7 203 chr15 82767770 82767938 -2927816 - MER77 LTR ERV1 -372 233 144 1897 153 0 10 chr15 82767938 82768233 -2927521 + AluSg SINE Alu 5 296 -14 886 148 7 203 chr15 82768233 82768354 -2927400 - MER77 LTR ERV1 -461 144 1 32 0 0 0 chr15 82768726 82768758 -2926996 + AT_rich Low_complexity Low_complexity 1 32 0 2007 142 0 0 chr15 82768892 82769201 -2926553 - AluSg SINE Alu -1 309 1 488 93 13 0 chr15 82770869 82770944 -2924810 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 1673 176 40 7 chr15 82770944 82771294 -2924460 - AluJb SINE Alu 0 360 1 2100 136 7 0 chr15 82771492 82771800 -2923954 - AluSx SINE Alu -2 310 1 201 295 98 44 chr15 82771836 82772019 -2923735 + L2 LINE L2 3121 3313 0 190 153 34 0 chr15 82773723 82773782 -2921972 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 354 242 0 0 chr15 82773914 82773976 -2921778 - AluS SINE Alu -237 63 2 653 215 0 0 chr15 82774120 82774264 -2921490 - L1P LINE L1 -991 5155 5012 * 5709 161 8 73 chr15 82774260 82775492 -2920262 + L1P LINE L1 3851 5002 -1144 456 268 78 17 chr15 82775547 82775711 -2920043 - MER46C DNA MER2_type -2 336 159 1627 189 85 32 chr15 82775711 82776087 -2919667 + MSTD LTR MaLR 1 396 0 456 268 78 17 chr15 82776087 82776101 -2919653 - MER46C DNA MER2_type -179 159 147 2071 137 3 0 chr15 82776232 82776532 -2919222 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr15 82776565 82776589 -2919165 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2231 71 3 0 chr15 82776598 82776880 -2918874 - AluY SINE Alu -28 283 1 481 118 11 11 chr15 82777824 82777917 -2917837 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 3286 147 21 2 chr15 82777970 82778540 -2917214 - L1PA16 LINE L1 -4 7600 7020 12570 238 44 24 chr15 82778582 82780850 -2914904 - L1PA16 LINE L1 -682 6922 4702 1447 192 6 45 chr15 82780850 82781163 -2914591 - AluJb SINE Alu -9 303 3 12570 238 44 24 chr15 82781163 82781224 -2914530 - L1PA16 LINE L1 -2902 4702 4644 459 35 0 0 chr15 82781224 82781281 -2914473 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 12570 238 44 24 chr15 82781281 82781891 -2913863 - L1PA16 LINE L1 -2960 4644 4048 1756 123 0 15 chr15 82781891 82782152 -2913602 - AluSc SINE Alu -9 300 44 12570 238 44 24 chr15 82782152 82783156 -2912598 - L1PA16 LINE L1 -3556 4048 2914 392 18 18 0 chr15 82783156 82783211 -2912543 - L1PA2 LINE L1 0 6155 6100 12570 238 44 24 chr15 82783211 82783952 -2911802 - L1PA16 LINE L1 -4690 2914 2190 181 128 0 77 chr15 82785383 82785422 -2910332 - MER5C DNA MER1_type -9 315 280 40 0 0 0 chr15 82785624 82785664 -2910090 + AT_rich Low_complexity Low_complexity 1 40 0 253 274 132 19 chr15 82786591 82786697 -2909057 + MIR SINE MIR 134 251 -11 2273 93 0 0 chr15 82787140 82787419 -2908335 - AluSc SINE Alu -28 281 3 770 183 118 0 chr15 82787451 82787620 -2908134 - MER53 DNA DNA 0 189 1 222 191 0 0 chr15 82788529 82788576 -2907178 + GA-rich Low_complexity Low_complexity 2 48 0 438 20 0 0 chr15 82792190 82792241 -2903513 + (TG)n Simple_repeat Simple_repeat 2 52 0 224 333 122 8 chr15 82795285 82795408 -2900346 - L2 LINE L2 -3 3269 3133 1370 255 42 42 chr15 82795412 82795843 -2899911 - LTR40c LTR ERVL 0 465 35 1540 225 58 6 chr15 82796663 82796988 -2898766 + Tigger7 DNA MER2_type 3 344 -2143 899 129 65 0 chr15 82796983 82797122 -2898632 + Tigger7 DNA MER2_type 2343 2490 -1 * 4851 106 24 8 chr15 82799943 82800704 -2895050 + L1MA5A LINE L1 5523 6295 -2 22 35 0 0 chr15 82800894 82800923 -2894831 + AT_rich Low_complexity Low_complexity 1 29 0 601 274 64 66 chr15 82801447 82801855 -2893899 - L1MEd LINE L1 -5193 926 520 1890 146 55 25 chr15 82801951 82802315 -2893439 + THE1C LTR MaLR 1 375 0 253 261 23 54 chr15 82802601 82802731 -2893023 - L1MEd LINE L1 -5991 128 3 650 296 56 14 chr15 82803841 82804054 -2891700 + MIR SINE MIR 28 249 -13 255 320 0 0 chr15 82804156 82804231 -2891523 - L3 LINE CR1 -209 1368 1294 9616 134 34 9 chr15 82804235 82805782 -2889972 + Tigger1 DNA MER2_type 1 1586 -832 2264 96 0 0 chr15 82805783 82806065 -2889689 + AluSg SINE Alu 1 282 -28 16597 212 43 10 chr15 82806682 82810756 -2884998 - L1PA15-16 LINE L1 -851 6733 2536 325 128 0 0 chr15 82810758 82810805 -2884949 - L1PA15-16 LINE L1 -5135 2446 2400 674 312 66 46 chr15 82810810 82811825 -2883929 + L1ME4a LINE L1 3666 4700 -1446 304 309 12 0 chr15 82811827 82811908 -2883846 - L2 LINE L2 -3 3310 3229 316 335 121 13 chr15 82812092 82812316 -2883438 - MIR SINE MIR -10 252 5 4568 201 15 24 chr15 82812552 82813677 -2882077 - L1MA9 LINE L1 -39 6273 5159 487 257 109 32 chr15 82813663 82814001 -2881753 + L1ME4a LINE L1 5606 5969 -152 * 23 54 0 0 chr15 82814342 82814379 -2881375 + AT_rich Low_complexity Low_complexity 1 37 0 658 329 27 9 chr15 82815473 82815695 -2880059 - MIR SINE MIR -2 260 35 551 252 168 0 chr15 82815864 82816019 -2879735 - MER5A DNA MER1_type 0 189 9 2426 73 0 0 chr15 82816029 82816329 -2879425 + AluY SINE Alu 1 300 -11 204 40 0 0 chr15 82818708 82818733 -2877021 + (TG)n Simple_repeat Simple_repeat 2 26 0 29 47 0 0 chr15 82819132 82819175 -2876579 + AT_rich Low_complexity Low_complexity 1 43 0 643 269 0 6 chr15 82819317 82819484 -2876270 + FRAM SINE Alu 4 169 -7 22 80 0 0 chr15 82819536 82819586 -2876168 + AT_rich Low_complexity Low_complexity 1 50 0 359 313 62 26 chr15 82819919 82820146 -2875608 + L1MC4a LINE L1 6540 6774 -1034 837 261 11 11 chr15 82820192 82820380 -2875374 + MER5A DNA MER1_type 2 189 0 1150 220 133 78 chr15 82820381 82821058 -2874696 + L1MC5 LINE L1 7200 7913 -48 656 258 191 12 chr15 82821270 82821697 -2874057 - LTR33 LTR ERVL -4 517 1 1761 157 99 0 chr15 82822840 82823133 -2872621 - MER1B DNA MER1_type -17 322 1 549 308 9 51 chr15 82823453 82823667 -2872087 + MIR SINE MIR 2 206 -56 659 81 0 0 chr15 82823877 82823964 -2871790 - L1P2 LINE L1 -387 5767 5681 1186 70 0 0 chr15 82823969 82824127 -2871627 + L1PA5 LINE L1 5990 6147 -7 358 309 120 40 chr15 82824496 82824671 -2871083 + MIR3 SINE MIR 2 190 -18 21 0 0 0 chr15 82824732 82824753 -2871001 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 82826338 82826363 -2869391 + AT_rich Low_complexity Low_complexity 1 25 0 710 314 21 21 chr15 82827559 82827798 -2867956 + L2 LINE L2 2872 3110 -203 180 279 0 0 chr15 82827814 82827857 -2867897 - L2 LINE L2 -246 3067 3025 290 255 112 0 chr15 82827929 82828027 -2867727 + MIR SINE MIR 116 224 -38 339 25 0 0 chr15 82828184 82828224 -2867530 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 67 0 0 chr15 82828224 82828254 -2867500 + (TC)n Simple_repeat Simple_repeat 1 30 0 298 285 36 66 chr15 82828451 82828588 -2867166 + L2 LINE L2 3181 3313 0 4690 110 10 21 chr15 82829011 82829730 -2866024 + Tigger1 DNA MER2_type 1703 2413 -5 210 310 0 0 chr15 82830280 82830338 -2865416 - L2 LINE L2 -5 3308 3251 467 344 41 12 chr15 82830453 82830697 -2865057 - L2 LINE L2 -192 3080 2830 726 220 154 14 chr15 82830779 82830993 -2864761 + MLT1C LTR MaLR 224 467 0 689 344 138 32 chr15 82831036 82832080 -2863674 - L2 LINE L2 -1236 2078 924 237 261 25 109 chr15 82832099 82832218 -2863536 - L2 LINE L2 -18 3254 3146 21 36 0 0 chr15 82832423 82832451 -2863303 + AT_rich Low_complexity Low_complexity 1 28 0 1433 151 73 4 chr15 82833136 82833395 -2862359 - MLT1B LTR MaLR -113 277 1 213 200 44 0 chr15 82833398 82833443 -2862311 - L2 LINE L2 -78 3235 3189 437 209 12 12 chr15 82833444 82833530 -2862224 - MER58 DNA MER1_type -1 2419 129 386 310 108 38 chr15 82833575 82833862 -2861892 - L2 LINE L2 -137 3176 2870 21 0 0 0 chr15 82835719 82835740 -2860014 + AT_rich Low_complexity Low_complexity 1 21 0 310 277 0 0 chr15 82835766 82835849 -2859905 + (CATA)n Simple_repeat Simple_repeat 2 84 0 186 133 0 0 chr15 82837913 82837943 -2857811 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1427 242 60 96 chr15 82838575 82839241 -2856513 - MER21B LTR ERV1 -124 739 98 237 290 29 80 chr15 82839214 82839318 -2856436 - MER77 LTR ERV1 -408 197 100 * 1487 94 70 0 chr15 82839318 82839531 -2856223 - MER30 DNA MER1_type 0 230 3 237 290 29 80 chr15 82839531 82839564 -2856190 - MER77 LTR ERV1 -505 100 67 2417 70 0 3 chr15 82840517 82840815 -2854939 - AluY SINE Alu -14 297 1 228 178 44 0 chr15 82840819 82840864 -2854890 - MER103 DNA DNA -114 52 6 267 287 64 53 chr15 82841350 82841444 -2854310 - L2 LINE L2 -37 3235 3141 302 231 107 41 chr15 82841783 82841952 -2853802 + Charlie7 DNA MER1_type 2432 2611 -1 258 331 31 23 chr15 82842102 82842232 -2853522 + L2 LINE L2 2657 2787 -527 534 236 87 35 chr15 82843139 82843368 -2852386 + MER112 DNA MER1_type 8 248 -12 180 374 43 22 chr15 82843390 82843620 -2852134 - L2 LINE L2 -2510 804 570 1214 106 11 17 chr15 82843661 82843840 -2851914 - AluSg/x SINE Alu -7 305 128 808 188 12 41 chr15 82843842 82844012 -2851742 + MER5A DNA MER1_type 1 165 -24 24 0 0 0 chr15 82845110 82845134 -2850620 + AT_rich Low_complexity Low_complexity 1 24 0 621 219 102 16 chr15 82845141 82845328 -2850426 + L1ME3A LINE L1 5935 6137 -33 542 323 121 27 chr15 82845591 82846111 -2849643 - L2 LINE L2 -28 3285 2710 216 313 0 0 chr15 82846277 82846341 -2849413 + MIR SINE MIR 47 110 -152 185 226 0 0 chr15 82846360 82846391 -2849363 + L2 LINE L2 3263 3293 -20 257 286 0 41 chr15 82846828 82846926 -2848828 + L1MC/D LINE L1 5723 5793 -449 507 261 171 24 chr15 82847364 82847575 -2848179 - MIR SINE MIR -9 253 12 2134 104 101 18 chr15 82847819 82848155 -2847599 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr15 82848728 82848751 -2847003 + AT_rich Low_complexity Low_complexity 1 23 0 484 233 167 0 chr15 82849731 82849851 -2845903 + MER3 DNA MER1_type 70 209 0 372 233 0 0 chr15 82849851 82849881 -2845873 - MER3 DNA MER1_type -162 47 18 186 359 0 0 chr15 82849885 82849938 -2845816 - MER5A DNA MER1_type -74 115 63 2648 32 7 3 chr15 82850052 82850362 -2845392 + AluY SINE Alu 1 311 0 2229 108 3 0 chr15 82850384 82850679 -2845075 + AluSg SINE Alu 1 296 -14 2130 126 3 10 chr15 82852142 82852443 -2843311 + AluSx SINE Alu 1 299 -13 2235 62 7 13 chr15 82852760 82853066 -2842688 + L1PA8 LINE L1 5868 6171 -1 1626 252 61 20 chr15 82853485 82854585 -2841169 - L1MEc LINE L1 -5123 1273 52 1521 159 70 0 chr15 82856262 82856532 -2839222 - MSTA LTR MaLR 0 428 140 21 0 0 0 chr15 82860271 82860292 -2835462 + AT_rich Low_complexity Low_complexity 1 21 0 3262 163 26 35 chr15 82861063 82861336 -2834418 + L1MA3 LINE L1 5359 5633 -672 2177 137 3 0 chr15 82861336 82861643 -2834111 + AluSx SINE Alu 5 312 0 3262 163 26 35 chr15 82861643 82862137 -2833617 + L1MA3 LINE L1 5633 6305 0 240 311 11 0 chr15 82862267 82862357 -2833397 + MARNA DNA Mariner 300 390 -196 550 213 135 4 chr15 82862360 82862523 -2833231 + L1MB8 LINE L1 5703 5883 -287 205 233 12 12 chr15 82862555 82862641 -2833113 + GA-rich Low_complexity Low_complexity 1 86 0 267 31 0 0 chr15 82863714 82863746 -2832008 + (TAG)n Simple_repeat Simple_repeat 1 32 0 303 343 140 7 chr15 82864563 82864706 -2831048 - MIR3 SINE MIR -10 198 37 184 356 40 94 chr15 82864927 82865129 -2830625 - MIR SINE MIR -50 212 22 225 200 0 80 chr15 82865137 82865187 -2830567 - L2 LINE L2 -2 3311 3266 24 0 0 0 chr15 82865631 82865655 -2830099 + AT_rich Low_complexity Low_complexity 1 24 0 1311 205 92 16 chr15 82866832 82867149 -2828605 - MER58B DNA MER1_type 0 341 1 1790 183 8 45 chr15 82868405 82868782 -2826972 + MLT1A1 LTR MaLR 1 363 -2 520 316 64 13 chr15 82868815 82869049 -2826705 - L2 LINE L2 -40 3232 2987 204 152 0 22 chr15 82872390 82872436 -2823318 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr15 82873294 82873316 -2822438 + AT_rich Low_complexity Low_complexity 1 22 0 8552 194 14 3 chr15 82873509 82875522 -2820232 + L1 LINE L1 3394 5428 -723 255 224 0 0 chr15 82876866 82876915 -2818839 + L1PA12 LINE L1 998 1046 -6535 768 283 45 29 chr15 82876922 82877297 -2818457 + L1PA12 LINE L1 1005 1385 -6196 423 282 48 48 chr15 82877497 82877706 -2818048 + L1PA12 LINE L1 1152 1360 -6221 1696 155 55 42 chr15 82877707 82878107 -2817647 + MSTA LTR MaLR 1 405 -23 521 271 156 25 chr15 82878259 82878481 -2817273 - MIR SINE MIR -11 251 3 197 333 0 48 chr15 82878507 82878591 -2817163 - MER5B DNA MER1_type -1 177 98 271 361 31 0 chr15 82878616 82878713 -2817041 + MER5B DNA MER1_type 20 119 -59 6688 175 64 8 chr15 82879966 82882257 -2813497 - L1PBa LINE L1 -4293 2570 6 863 150 19 6 chr15 82882275 82882435 -2813319 - MLT1A2 LTR MaLR -212 162 1 4647 233 48 52 chr15 82882943 82883690 -2812064 + L1M3b LINE L1 2258 3007 -4558 3968 70 10 2 chr15 82883690 82884208 -2811546 + L1PA7 LINE L1 5632 6153 -1 4647 233 48 52 chr15 82884208 82885798 -2809956 + L1M3b LINE L1 3007 4458 -3107 1876 176 10 3 chr15 82885798 82886094 -2809660 + AluJb SINE Alu 1 298 -14 4647 233 48 52 chr15 82886094 82886519 -2809235 + L1M3b LINE L1 4458 4884 -2681 615 129 0 0 chr15 82886637 82886722 -2809032 - AluY SINE Alu -225 85 1 1108 255 76 58 chr15 82887047 82887509 -2808245 + MLT1F1 LTR MaLR 89 558 -9 1861 144 22 0 chr15 82887519 82887831 -2807923 + AluSx SINE Alu 2 319 0 1286 236 90 48 chr15 82887847 82888106 -2807648 - MLT1D LTR MaLR -7 498 251 288 0 0 0 chr15 82888106 82888138 -2807616 + (TG)n Simple_repeat Simple_repeat 1 32 0 1286 236 90 48 chr15 82888138 82888159 -2807595 - MLT1D LTR MaLR -254 251 232 2275 45 13 36 chr15 82888159 82888468 -2807286 - AluY SINE Alu -7 304 3 1286 236 90 48 chr15 82888468 82888664 -2807090 - MLT1D LTR MaLR -273 232 1 601 306 81 14 chr15 82888682 82888904 -2806850 - MIR SINE MIR -24 238 2 2547 71 0 0 chr15 82890367 82890678 -2805076 + AluY SINE Alu 1 311 0 361 366 67 13 chr15 82890686 82890984 -2804770 + LTR16C LTR ERVL 160 473 -18 186 297 141 0 chr15 82891256 82891320 -2804434 - MIR3 SINE MIR -31 177 105 1278 230 48 13 chr15 82891380 82891693 -2804061 + MER58B DNA MER1_type 1 324 -17 34 0 0 0 chr15 82891693 82891727 -2804027 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr15 82891844 82891871 -2803883 + AT_rich Low_complexity Low_complexity 1 27 0 376 347 17 29 chr15 82891997 82892170 -2803584 + MIR3 SINE MIR 16 186 -22 353 113 0 0 chr15 82892170 82892223 -2803531 + MER74B LTR ERVL 1 53 -569 1162 215 62 26 chr15 82892299 82892638 -2803116 + MER74B LTR ERVL 204 554 -68 22 0 0 0 chr15 82893107 82893129 -2802625 + AT_rich Low_complexity Low_complexity 1 22 0 1361 184 61 65 chr15 82893129 82893422 -2802332 - AluJo SINE Alu -20 292 1 20053 159 33 23 chr15 82893755 82899508 -2796246 + L1MA3 LINE L1 16 5868 -1856 2244 108 3 0 chr15 82899508 82899824 -2795930 + AluSp SINE Alu 1 313 0 20053 159 33 23 chr15 82899824 82901353 -2794401 + L1MA3 LINE L1 5868 7380 -344 193 364 45 8 chr15 82904132 82904264 -2791490 + L3 LINE CR1 701 837 -740 3591 186 99 41 chr15 82904734 82905741 -2790013 + L1M4c LINE L1 20 1085 -5299 5486 136 14 7 chr15 82905749 82907050 -2788704 - L1PA13 LINE L1 -5 6158 4850 1256 181 71 7 chr15 82907045 82907376 -2788378 + L1M4c LINE L1 1174 1857 -4526 * 4409 168 27 32 chr15 82907392 82908777 -2786977 + L1M4c LINE L1 1630 3022 -3360 852 225 225 27 chr15 82908778 82909107 -2786647 + MSTD LTR MaLR 1 394 -2 4881 218 50 7 chr15 82909118 82910484 -2785270 + L1M4c LINE L1 3028 4452 -1930 3034 216 86 16 chr15 82910586 82911980 -2783774 + L1MA9 LINE L1 4917 6399 -149 396 0 0 0 chr15 82911992 82912036 -2783718 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 328 0 0 chr15 82912254 82912315 -2783439 + L3 LINE CR1 1516 1576 -1 1085 221 70 62 chr15 82913511 82913869 -2781885 - MLT1A1 LTR MaLR -4 361 1 326 273 72 15 chr15 82914398 82914410 -2781344 + MIR3 SINE MIR 6 16 -207 2230 77 0 28 chr15 82914410 82914697 -2781057 + AluSq SINE Alu 27 305 -8 326 273 72 15 chr15 82914697 82914797 -2780957 + MIR3 SINE MIR 16 123 -100 188 279 0 0 chr15 82914797 82914840 -2780914 + L3 LINE CR1 1530 1572 -5 288 282 94 43 chr15 82915093 82915210 -2780544 + MIR SINE MIR 128 250 -12 380 140 44 7 chr15 82915567 82915703 -2780051 + (TA)n Simple_repeat Simple_repeat 1 141 0 267 92 98 12 chr15 82915769 82915933 -2779821 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 82 0 0 chr15 82915963 82916012 -2779742 + AT_rich Low_complexity Low_complexity 1 49 0 623 206 0 29 chr15 82916745 82916881 -2778873 - FLAM_A SINE Alu -1 132 1 183 42 0 0 chr15 82917191 82917215 -2778539 + (T)n Simple_repeat Simple_repeat 1 24 0 3977 165 28 12 chr15 82917478 82917750 -2778004 + L1MA7 LINE L1 5513 5779 -512 294 29 0 0 chr15 82917750 82917785 -2777969 + (CA)n Simple_repeat Simple_repeat 2 36 0 3977 165 28 12 chr15 82917785 82918277 -2777477 + L1MA7 LINE L1 5779 6289 -2 2225 205 21 52 chr15 82918455 82918859 -2776895 + MLT1D LTR MaLR 1 387 -118 2212 133 16 21 chr15 82918859 82919236 -2776518 - THE1C LTR MaLR 0 375 1 2225 205 21 52 chr15 82919236 82919352 -2776402 + MLT1D LTR MaLR 387 505 0 903 247 0 0 chr15 82919602 82919780 -2775974 + MER45A DNA AcHobo 1 178 0 204 209 0 0 chr15 82920576 82920619 -2775135 + A-rich Low_complexity Low_complexity 2 44 0 397 286 0 0 chr15 82920963 82921082 -2774672 + MER113 DNA MER1_type? 4 122 -399 273 306 152 84 chr15 82921297 82921620 -2774134 + L2 LINE L2 2928 3272 0 553 206 55 34 chr15 82923584 82923779 -2771975 - LTR45B LTR ERV1 0 489 331 246 188 0 21 chr15 82923826 82923874 -2771880 - MER72 LTR ERV1 -246 476 430 315 122 0 0 chr15 82924193 82924242 -2771512 + (CA)n Simple_repeat Simple_repeat 2 50 0 454 220 8 83 chr15 82924245 82924377 -2771377 + L2 LINE L2 3192 3313 0 948 18 0 0 chr15 82928865 82928976 -2766778 - L1PA5 LINE L1 -3 6151 6041 804 316 105 36 chr15 82929834 82930537 -2765217 + L2 LINE L2 2511 3255 -58 393 243 164 0 chr15 82932968 82933108 -2762646 + MER3 DNA MER1_type 47 209 0 240 259 0 0 chr15 82933065 82933119 -2762635 - MER3 DNA MER1_type -119 90 37 * 226 357 18 0 chr15 82933603 82933715 -2762039 - MER117 DNA MER1_type -70 127 14 767 155 0 39 chr15 82934467 82934596 -2761158 - FLAM_A SINE Alu -9 124 1 1817 168 28 15 chr15 82934724 82935116 -2760638 - L1PA11 LINE L1 0 6174 5778 9151 134 14 1 chr15 82935221 82936707 -2759047 - L1PA11 LINE L1 -850 5296 3792 539 286 4 91 chr15 82936812 82937088 -2758666 + MIR SINE MIR 1 252 -10 213 267 50 17 chr15 82937628 82937688 -2758066 + L2 LINE L2 3251 3312 -1 851 287 87 33 chr15 82938704 82939232 -2756522 + L1ME LINE L1 4499 4997 -1165 1985 227 113 12 chr15 82939232 82939747 -2756007 - MLT1F1 LTR MaLR 0 567 1 851 287 87 33 chr15 82939747 82940172 -2755582 + L1ME LINE L1 4997 5506 -656 18935 158 43 8 chr15 82940275 82943598 -2752156 + L1M1 LINE L1 282 3710 -3855 856 150 7 0 chr15 82943600 82943753 -2752001 + L1M1 LINE L1 4837 4990 -2575 10346 92 5 3 chr15 82943755 82945254 -2750500 + L1PA7 LINE L1 2324 3825 -2321 11279 85 9 34 chr15 82945357 82947797 -2747957 + L1PA7 LINE L1 3731 6154 0 3938 159 44 7 chr15 82947797 82948543 -2747211 + L1M1 LINE L1 4980 5753 -1812 * 11612 197 41 17 chr15 82948539 82952214 -2743540 - L1PB1 LINE L1 -8 6143 2377 515 355 84 42 chr15 82953660 82954040 -2741714 + L3 LINE CR1 191 586 -991 311 267 210 47 chr15 82954065 82954274 -2741480 - MIR SINE MIR -4 258 17 531 248 35 138 chr15 82954281 82954571 -2741183 + L3 LINE CR1 1297 1556 -21 338 250 125 0 chr15 82954683 82954819 -2740935 - L1ME4a LINE L1 -9 6112 5960 2360 87 0 3 chr15 82955025 82955334 -2740420 - AluY SINE Alu 0 311 4 305 299 26 26 chr15 82955337 82955491 -2740263 - L1ME4a LINE L1 -469 5652 5499 799 310 116 35 chr15 82955759 82956243 -2739511 - MLT1K LTR MaLR -18 570 48 201 196 0 0 chr15 82956778 82956824 -2738930 + T-rich Low_complexity Low_complexity 1 46 0 220 328 0 0 chr15 82957133 82957197 -2738557 - L2 LINE L2 -5 3308 3245 1016 201 38 123 chr15 82957661 82958060 -2737694 + MLT1A1 LTR MaLR 1 365 0 378 224 168 40 chr15 82958803 82958928 -2736826 + MIR SINE MIR 5 145 -117 426 139 0 0 chr15 82960024 82960096 -2735658 + (CA)n Simple_repeat Simple_repeat 1 72 0 231 306 64 38 chr15 82960141 82960298 -2735456 - HsTC2 DNA Tc2 -1228 670 510 323 209 46 154 chr15 82960341 82960647 -2735107 - HsTC2 DNA Tc2 -1625 273 1 302 374 84 13 chr15 82962468 82962623 -2733131 + MIR SINE MIR 47 212 -50 339 298 53 0 chr15 82963330 82963444 -2732310 + MER5B DNA MER1_type 57 176 -2 * 417 176 34 14 chr15 82963358 82963453 -2732301 - MER5B DNA MER1_type -88 93 3 345 192 192 0 chr15 82963730 82963829 -2731925 + Charlie1 DNA MER1_type 2644 2761 0 266 329 112 33 chr15 82963848 82964000 -2731754 + L2 LINE L2 3119 3282 -31 1912 203 101 7 chr15 82964000 82964424 -2731330 + MLT1C LTR MaLR 1 464 -3 441 264 9 0 chr15 82964470 82964576 -2731178 - MIR SINE MIR -60 202 96 360 285 18 19 chr15 82966024 82966169 -2729585 + MIR SINE MIR 3 151 -66 620 105 0 0 chr15 82972146 82972232 -2723522 - AluJb SINE Alu -188 124 39 592 274 126 21 chr15 82972333 82972523 -2723231 + MER63A DNA MER1_type 1 210 0 278 277 0 24 chr15 82972573 82972656 -2723098 + Charlie7 DNA MER1_type 2 82 -2530 189 286 165 2 chr15 82972796 82972918 -2722836 - MIR SINE MIR -3 259 87 267 190 25 38 chr15 82972933 82973012 -2722742 + Charlie7 DNA MER1_type 2528 2605 -7 239 341 98 6 chr15 82973026 82973199 -2722555 + L2 LINE L2 2142 2330 -984 267 301 60 0 chr15 82973378 82973461 -2722293 + MIR3 SINE MIR 113 200 -8 25 31 0 0 chr15 82974160 82974192 -2721562 + AT_rich Low_complexity Low_complexity 1 32 0 2468 53 0 0 chr15 82978432 82978716 -2717038 + AluY SINE Alu 23 306 -5 481 224 87 12 chr15 82979577 82979738 -2716016 - MER82 DNA MER2_type -459 194 22 10198 123 5 19 chr15 82979738 82981410 -2714344 - L1P LINE L1 -3661 2485 838 234 243 71 0 chr15 82981417 82981487 -2714267 - L1ME LINE L1 -335 5827 5753 1897 133 0 48 chr15 82981496 82981812 -2713942 - AluSx SINE Alu -11 301 1 1549 256 48 31 chr15 82981812 82982289 -2713465 + MLT2B1 LTR ERVL 1 485 -35 728 289 84 22 chr15 82982297 82982882 -2712872 - L1M4 LINE L1 -2402 3744 3124 23 33 0 0 chr15 82982992 82983022 -2712732 + AT_rich Low_complexity Low_complexity 1 30 0 463 320 113 0 chr15 82983267 82983461 -2712293 - LTR16A LTR ERVL -234 216 1 2384 86 0 0 chr15 82984518 82984821 -2710933 - AluY SINE Alu 0 311 9 231 302 57 38 chr15 82988745 82988851 -2706903 + MIR SINE MIR 100 207 -55 216 0 0 0 chr15 82988891 82988915 -2706839 + (TTA)n Simple_repeat Simple_repeat 3 26 0 703 274 40 50 chr15 82989073 82989453 -2706301 + L1MC4a LINE L1 5507 5882 -1926 22 0 0 0 chr15 82989651 82989673 -2706081 + AT_rich Low_complexity Low_complexity 1 22 0 1884 143 26 26 chr15 82990449 82990756 -2704998 - AluSx SINE Alu -4 308 2 2225 171 29 17 chr15 82990825 82991245 -2704509 + MSTB LTR MaLR 1 425 -1 577 284 209 5 chr15 82991278 82991489 -2704265 + MIR SINE MIR 2 255 -7 545 238 31 12 chr15 82991519 82991679 -2704075 + MER103 DNA DNA 2 164 -2 686 290 28 9 chr15 82991963 82992180 -2703574 - MIR SINE MIR 0 262 42 2175 99 20 3 chr15 82992630 82992932 -2702822 - AluSq SINE Alu -6 307 1 2385 192 2 2 chr15 82992932 82993390 -2702364 - L1M4 LINE L1 -3369 2777 2320 * 2818 179 8 4 chr15 82993376 82993895 -2701859 - L1PBa LINE L1 -4951 1912 1392 565 290 5 10 chr15 82993892 82994085 -2701669 - L1PBa LINE L1 -6666 197 6 * 6559 140 31 2 chr15 82994107 82996032 -2699722 + L1MA2 LINE L1 4317 6297 -7 749 261 45 41 chr15 82996121 82996366 -2699388 - MLT1K LTR MaLR -201 387 142 272 30 0 0 chr15 82997048 82997081 -2698673 + L1MA1 LINE L1 5963 5995 -307 353 266 184 0 chr15 82997440 82997549 -2698205 + MER94 DNA DNA 5 133 -1 2289 106 0 0 chr15 82998088 82998390 -2697364 - AluSg SINE Alu -8 302 1 15773 212 33 11 chr15 82999069 82999643 -2696111 - L1PA15 LINE L1 -13 7590 7030 2173 128 73 14 chr15 82999643 82999987 -2695767 - THE1B LTR MaLR 0 364 1 11871 93 5 0 chr15 82999987 83001559 -2694195 - THE1B-int LTR MaLR 0 1580 1 2037 121 92 15 chr15 83001559 83001897 -2693857 - THE1B LTR MaLR 0 364 1 15773 212 33 11 chr15 83001897 83005468 -2690286 - L1PA15 LINE L1 -573 7030 3540 2067 125 3 3 chr15 83005468 83005756 -2689998 + AluSx SINE Alu 1 288 -24 15773 212 33 11 chr15 83005756 83006367 -2689387 - L1PA15 LINE L1 -4063 3540 2944 1761 152 76 0 chr15 83006367 83006657 -2689097 - AluSx SINE Alu 0 312 1 15773 212 33 11 chr15 83006657 83007059 -2688695 - L1PA15 LINE L1 -4659 2944 2313 950 281 193 21 chr15 83007159 83007896 -2687858 - L2 LINE L2 -21 3292 2424 3453 90 10 19 chr15 83008105 83008625 -2687129 - L1MA3 LINE L1 0 6305 5791 185 416 50 12 chr15 83009260 83009421 -2686333 - L2 LINE L2 -219 3053 2887 1327 182 28 17 chr15 83010181 83010472 -2685282 + Charlie4a DNA MER1_type 39 332 -176 577 210 14 14 chr15 83010591 83010729 -2685025 + Charlie4a DNA MER1_type 365 502 -6 206 204 41 0 chr15 83010755 83010804 -2684950 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 230 294 0 24 chr15 83011179 83011208 -2684546 + (TA)n Simple_repeat Simple_repeat 2 30 -54 189 0 0 0 chr15 83011208 83011229 -2684525 + (CA)n Simple_repeat Simple_repeat 2 22 0 230 294 0 24 chr15 83011229 83011284 -2684470 + (TA)n Simple_repeat Simple_repeat 30 84 0 27 29 0 0 chr15 83011420 83011454 -2684300 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr15 83011556 83011585 -2684169 + AT_rich Low_complexity Low_complexity 1 29 0 580 29 0 0 chr15 83012455 83012525 -2683229 + L1PA5 LINE L1 6079 6148 -6 243 326 122 0 chr15 83013066 83013164 -2682590 - L2 LINE L2 0 3272 3163 320 216 45 11 chr15 83014537 83014625 -2681129 + L2 LINE L2 3221 3311 -2 234 362 24 47 chr15 83014786 83014854 -2680900 - MIR SINE MIR -62 146 81 496 280 15 0 chr15 83014854 83014986 -2680768 + MER94 DNA DNA 1 134 0 234 362 24 47 chr15 83014986 83015044 -2680710 - MIR SINE MIR -127 81 23 727 307 106 10 chr15 83015897 83016200 -2679554 - MLT1I LTR MaLR -3 406 75 514 259 52 29 chr15 83017072 83017246 -2678508 - LTR41 LTR ERVL -595 178 1 2198 156 17 0 chr15 83017534 83017887 -2677867 + MER47A DNA MER2_type 8 366 0 207 299 26 26 chr15 83018526 83018603 -2677151 - MIR SINE MIR -74 134 58 266 86 0 0 chr15 83018711 83018746 -2677008 - U2 snRNA snRNA -153 35 1 198 71 0 0 chr15 83019626 83019654 -2676100 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 221 98 24 0 chr15 83022726 83022767 -2672987 + (TG)n Simple_repeat Simple_repeat 2 43 0 35 0 0 0 chr15 83028687 83028722 -2667032 + AT_rich Low_complexity Low_complexity 1 35 0 256 316 123 19 chr15 83028965 83029120 -2666634 - MIR3 SINE MIR -22 186 16 180 97 0 0 chr15 83030060 83030091 -2665663 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 249 83 0 0 chr15 83031251 83031287 -2664467 + (TG)n Simple_repeat Simple_repeat 2 37 0 429 129 0 0 chr15 83034189 83034259 -2661495 + (TATG)n Simple_repeat Simple_repeat 2 71 0 587 251 54 49 chr15 83037373 83037576 -2658178 - MIR SINE MIR -13 249 46 361 187 54 35 chr15 83037702 83037822 -2657932 - MIR SINE MIR -69 139 18 252 336 19 101 chr15 83037954 83038222 -2657532 - L2 LINE L2 -7 3265 3020 4470 54 123 149 chr15 83038281 83039129 -2656625 - LTR12 LTR ERV1 0 826 1 281 325 146 35 chr15 83039348 83039952 -2655802 - L2 LINE L2 -839 2475 1805 2399 74 7 0 chr15 83041364 83041663 -2654091 + AluY SINE Alu 1 301 -10 1477 215 7 24 chr15 83041884 83042182 -2653572 + AluJb SINE Alu 3 295 -7 251 337 28 50 chr15 83043103 83043284 -2652470 - MER5B DNA MER1_type -1 177 1 854 121 38 0 chr15 83044362 83044494 -2651260 - MSTA LTR MaLR -291 137 1 9380 175 19 4 chr15 83044513 83046117 -2649637 - MSTA-int LTR MaLR -9 1642 15 1963 154 51 54 chr15 83046145 83046574 -2649180 - MSTA LTR MaLR 0 428 1 429 20 0 0 chr15 83046956 83047006 -2648748 + (TA)n Simple_repeat Simple_repeat 1 50 0 207 69 0 0 chr15 83047005 83047034 -2648720 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 30 69 0 0 chr15 83047115 83047173 -2648581 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr15 83049811 83049833 -2645921 + AT_rich Low_complexity Low_complexity 1 22 0 303 388 7 41 chr15 83050048 83050195 -2645559 - MIR3 SINE MIR -61 147 6 2394 169 37 11 chr15 83050227 83050682 -2645072 - MLT1C LTR MaLR 0 467 1 1313 166 24 142 chr15 83051206 83051544 -2644210 - AluJo SINE Alu -4 298 1 267 175 0 0 chr15 83052437 83052494 -2643260 + (TA)n Simple_repeat Simple_repeat 1 57 0 895 315 44 29 chr15 83052652 83053134 -2642620 - LTR16C LTR ERVL -2 489 1 1525 114 26 30 chr15 83053777 83054048 -2641706 + L1MA5A LINE L1 6022 6291 -6 24 0 0 0 chr15 83054135 83054159 -2641595 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 83054405 83054433 -2641321 + AT_rich Low_complexity Low_complexity 1 28 0 329 287 268 19 chr15 83054580 83054789 -2640965 + MIR SINE MIR 2 262 0 255 263 0 0 chr15 83056453 83056510 -2639244 - MIR3 SINE MIR -3 205 149 24 0 0 0 chr15 83056640 83056664 -2639090 + AT_rich Low_complexity Low_complexity 1 24 0 698 305 109 45 chr15 83056931 83057351 -2638403 - L2 LINE L2 0 3313 2867 1393 237 30 20 chr15 83057448 83057844 -2637910 - L2 LINE L2 -1648 1666 1267 2311 156 0 0 chr15 83057854 83058220 -2637534 + MER47A DNA MER2_type 1 366 0 189 250 0 0 chr15 83058225 83058265 -2637489 + MIR3 SINE MIR 132 171 -37 285 272 54 0 chr15 83058875 83058967 -2636787 + MIR SINE MIR 166 262 0 1588 296 39 37 chr15 83059309 83059962 -2635792 - MER77 LTR ERV1 -4 601 54 223 24 24 49 chr15 83060018 83060059 -2635695 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 621 271 104 83 chr15 83060293 83060903 -2634851 - L1M4 LINE L1 -1226 4920 4324 2211 108 14 0 chr15 83060903 83061200 -2634554 - AluSg SINE Alu -7 303 3 621 271 104 83 chr15 83061200 83061926 -2633828 - L1M4 LINE L1 -1822 4324 3554 192 233 0 97 chr15 83062024 83062127 -2633627 + MIR SINE MIR 147 239 -23 470 291 81 6 chr15 83062513 83062685 -2633069 + MIR3 SINE MIR 23 207 -1 405 0 0 0 chr15 83063366 83063411 -2632343 + (TG)n Simple_repeat Simple_repeat 1 45 0 210 91 0 0 chr15 83063411 83063444 -2632310 + (GA)n Simple_repeat Simple_repeat 2 34 0 247 283 118 53 chr15 83063455 83063607 -2632147 + MIR3 SINE MIR 12 173 -35 337 319 138 9 chr15 83063813 83064026 -2631728 + MIR SINE MIR 25 262 0 279 133 0 0 chr15 83065106 83065151 -2630603 + (TATG)n Simple_repeat Simple_repeat 2 46 0 400 213 138 21 chr15 83065656 83065844 -2629910 - HAL1 LINE L1 0 2507 2298 1398 264 145 34 chr15 83065895 83066869 -2628885 - HAL1 LINE L1 -1046 1461 380 305 254 35 35 chr15 83066920 83067062 -2628692 - HAL1 LINE L1 -1409 1098 957 628 323 14 0 chr15 83067071 83067291 -2628463 - HAL1 LINE L1 -2149 358 136 668 24 0 0 chr15 83067293 83067377 -2628377 - AluY SINE Alu -6 303 220 228 225 126 54 chr15 83067399 83067510 -2628244 - HAL1 LINE L1 -2387 120 2 223 344 76 19 chr15 83067617 83067774 -2627980 - L2 LINE L2 -775 2539 2374 260 331 34 17 chr15 83067889 83068064 -2627690 - LTR67 LTR ERVL -28 529 352 280 320 21 21 chr15 83068311 83068408 -2627346 - LTR67 LTR ERVL -363 194 98 1151 315 55 41 chr15 83068841 83069642 -2626112 - ERVL LTR ERVL -161 5324 4497 1503 121 4 4 chr15 83070202 83070451 -2625303 - L1MA2 LINE L1 0 6304 6056 215 310 56 0 chr15 83070451 83070522 -2625232 - L2 LINE L2 -10 3303 3229 229 281 140 41 chr15 83070993 83071164 -2624590 + MIR SINE MIR 20 207 -55 23 33 0 0 chr15 83071255 83071285 -2624469 + AT_rich Low_complexity Low_complexity 1 30 0 526 288 40 62 chr15 83071841 83072018 -2623736 - MIR SINE MIR -85 177 5 235 292 15 88 chr15 83072193 83072330 -2623424 - L2 LINE L2 -179 3093 2967 213 328 8 25 chr15 83074441 83074563 -2621191 + (CATATA)n Simple_repeat Simple_repeat 6 125 0 486 193 0 0 chr15 83074624 83074712 -2621042 - Tigger5 DNA MER2_type -5 2318 2231 234 0 0 0 chr15 83075314 83075340 -2620414 + (TA)n Simple_repeat Simple_repeat 2 27 0 436 330 54 51 chr15 83075661 83075994 -2619760 + MLT1I LTR MaLR 68 401 -8 2353 92 7 0 chr15 83076283 83076589 -2619165 - AluY SINE Alu -3 308 1 214 419 7 7 chr15 83076659 83076795 -2618959 + L2 LINE L2 2911 3046 -226 2400 139 44 7 chr15 83077011 83077420 -2618334 - MSTA LTR MaLR 0 428 5 444 169 48 0 chr15 83077771 83077854 -2617900 - MLT1K LTR MaLR -3 585 499 224 122 24 0 chr15 83078332 83078373 -2617381 + (TG)n Simple_repeat Simple_repeat 1 42 0 1550 232 73 62 chr15 83078819 83079353 -2616401 + LTR55 LTR ERV 1 540 -8 207 246 49 16 chr15 83079624 83079685 -2616069 - L2 LINE L2 -1 3312 3250 1230 207 54 59 chr15 83080266 83080658 -2615096 + MLT1B LTR MaLR 1 390 0 5493 147 22 4 chr15 83080904 83081801 -2613953 - L1PA16 LINE L1 0 6166 5252 2092 139 3 0 chr15 83081801 83082104 -2613650 - AluSx SINE Alu -8 304 1 5493 147 22 4 chr15 83082104 83082188 -2613566 - L1PA16 LINE L1 -914 5252 5171 1831 182 44 21 chr15 83085465 83085849 -2609905 - MLT2C1 LTR ERVL 0 397 5 1488 246 112 40 chr15 83086514 83087253 -2608501 - L1ME3A LINE L1 -3 6978 6294 2171 111 0 0 chr15 83087253 83087542 -2608212 - AluSg SINE Alu -21 289 1 1488 246 112 40 chr15 83087542 83088059 -2607695 - L1ME3A LINE L1 -687 6294 5606 439 302 105 1 chr15 83088138 83088441 -2607313 - L1ME3A LINE L1 -1807 5150 4808 3408 133 37 2 chr15 83088463 83089028 -2606726 + L1MC1 LINE L1 5392 5976 -357 2226 109 0 0 chr15 83089068 83089362 -2606392 + AluSx SINE Alu 1 294 -18 227 246 115 25 chr15 83089405 83089527 -2606227 - L1ME3A LINE L1 -3033 3924 3792 1659 150 31 3 chr15 83089539 83089833 -2605921 + L1MC1 LINE L1 6026 6327 -6 27 0 0 0 chr15 83089839 83089866 -2605888 + AT_rich Low_complexity Low_complexity 1 27 0 1204 268 72 44 chr15 83089993 83090077 -2605677 - L1M4 LINE L1 -2163 3983 3903 1457 196 117 36 chr15 83090077 83090496 -2605258 + MSTB2 LTR MaLR 1 453 -4 1204 268 72 44 chr15 83090496 83091060 -2604694 - L1M4 LINE L1 -2243 3903 3356 2556 147 26 0 chr15 83091060 83091475 -2604279 + MSTA LTR MaLR 3 428 0 1204 268 72 44 chr15 83091475 83091932 -2603822 - L1M4 LINE L1 -2790 3356 2803 322 283 100 36 chr15 83091922 83092171 -2603583 - L1M4b LINE L1 -4955 1992 1760 * 402 21 0 0 chr15 83092171 83092218 -2603536 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2228 102 0 3 chr15 83092220 83092505 -2603249 - AluSc SINE Alu -25 284 1 322 283 100 36 chr15 83092505 83092744 -2603010 - L1M4b LINE L1 -5187 1760 1329 221 272 57 32 chr15 83094940 83095053 -2600701 - MIR SINE MIR -68 140 63 378 312 65 42 chr15 83095269 83095532 -2600222 - L1MC/D LINE L1 -794 5565 5297 535 266 69 17 chr15 83096591 83096764 -2598990 - MIR SINE MIR -24 238 57 909 286 114 21 chr15 83096784 83097311 -2598443 - Charlie7 DNA MER1_type -1946 666 91 532 130 0 43 chr15 83097425 83097517 -2598237 - AluS SINE Alu -225 88 1 438 185 23 121 chr15 83097644 83097817 -2597937 - L1ME3A LINE L1 -216 5954 5799 442 276 0 9 chr15 83097858 83097963 -2597791 - MER69A DNA AcHobo -72 105 2 546 251 63 48 chr15 83097965 83098236 -2597518 - L1ME3A LINE L1 -515 5655 5381 346 347 12 18 chr15 83098236 83098403 -2597351 - LTR16C LTR ERVL 0 491 326 723 258 60 25 chr15 83098832 83099196 -2596558 - L1ME3A LINE L1 -761 5385 5009 3808 82 2 0 chr15 83099519 83100029 -2595725 + L1PA8 LINE L1 5653 6163 -9 350 232 211 0 chr15 83100029 83100124 -2595630 - MIR SINE MIR -105 157 43 571 225 44 0 chr15 83100176 83100336 -2595418 - L1ME3A LINE L1 -1517 4629 4463 1060 132 6 19 chr15 83100394 83100601 -2595153 + AluSg/x SINE Alu 128 332 0 616 207 201 17 chr15 83100918 83101092 -2594662 + MIR SINE MIR 14 219 -43 186 43 0 0 chr15 83101646 83101669 -2594085 + (A)n Simple_repeat Simple_repeat 1 23 0 278 194 113 8 chr15 83101686 83101810 -2593944 - L1ME3A LINE L1 -1712 4434 4298 1164 296 9 15 chr15 83101933 83102392 -2593362 - L1ME3A LINE L1 -2210 3936 3481 344 317 49 7 chr15 83102556 83102698 -2593056 - L1ME3A LINE L1 -2685 3461 3314 1811 213 70 25 chr15 83102965 83103449 -2592305 + Charlie1b DNA MER1_type 18 523 0 22 35 0 0 chr15 83154400 83154429 -2541325 + AT_rich Low_complexity Low_complexity 1 29 0 476 103 10 31 chr15 83155730 83155827 -2539927 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 1671 162 3 50 chr15 83155856 83156159 -2539595 - AluJb SINE Alu -23 289 1 1911 194 136 32 chr15 83156160 83156727 -2539027 - MLT1E2 LTR MaLR 0 626 1 2257 121 3 0 chr15 83157077 83157382 -2538372 - AluSx SINE Alu -6 306 1 270 270 0 0 chr15 83157672 83157735 -2538019 + (CACG)n Simple_repeat Simple_repeat 1 63 0 1420 120 0 0 chr15 83158264 83158455 -2537299 - AluSq SINE Alu -120 193 3 226 258 61 0 chr15 83159670 83159736 -2536018 + MIR SINE MIR 128 197 -65 25 0 0 0 chr15 83159820 83159845 -2535909 + AT_rich Low_complexity Low_complexity 1 25 0 309 250 0 13 chr15 83159945 83160021 -2535733 + MIR SINE MIR 51 125 -137 969 235 102 56 chr15 83160239 83160385 -2535369 - HAL1 LINE L1 -35 2472 2334 1867 154 27 13 chr15 83160385 83160719 -2535035 - AluSx SINE Alu 0 312 1 969 235 102 56 chr15 83160719 83161092 -2534662 - HAL1 LINE L1 -173 2334 1929 2456 84 89 10 chr15 83161092 83161123 -2534631 - MLT2A1 LTR ERVL 0 444 417 216 0 0 0 chr15 83161123 83161147 -2534607 + (TA)n Simple_repeat Simple_repeat 2 25 0 2456 84 89 10 chr15 83161147 83161506 -2534248 - MLT2A1 LTR ERVL -27 417 23 1567 269 27 16 chr15 83161578 83162092 -2533662 - HAL1 LINE L1 -594 1913 1394 2786 125 2 45 chr15 83162117 83162522 -2533232 + L1P LINE L1 1460 1840 -4306 789 36 27 9 chr15 83162522 83162632 -2533122 - L1PA2 LINE L1 0 6155 6044 2786 125 2 45 chr15 83162632 83162731 -2533023 + L1P LINE L1 1840 1942 -4204 406 239 34 0 chr15 83163996 83164084 -2531670 + MIR SINE MIR 122 212 -50 1865 139 3 38 chr15 83164725 83165041 -2530713 + AluJo SINE Alu 1 305 -7 216 364 25 16 chr15 83165493 83165614 -2530140 + MIR SINE MIR 20 141 -67 20285 88 12 7 chr15 83165930 83169031 -2526723 - L1P LINE L1 -760 5386 2269 3897 200 28 21 chr15 83169839 83171332 -2524422 - L1MB8 LINE L1 0 6178 4682 363 236 24 8 chr15 83171329 83171452 -2524302 - L1MB8 LINE L1 -1737 4409 4285 * 2877 129 0 7 chr15 83171506 83171946 -2523808 - MER83 LTR ERV1 -11 437 1 1625 239 16 57 chr15 83171946 83172490 -2523264 - L1MB8 LINE L1 -1908 4238 3717 18460 114 18 28 chr15 83172947 83174062 -2521692 + L1PA8 LINE L1 2140 3266 -2865 2179 105 7 0 chr15 83174062 83174347 -2521407 + AluSc SINE Alu 1 287 -22 18460 114 18 28 chr15 83174347 83176850 -2518904 + L1PA8 LINE L1 3266 5706 -425 3476 95 0 0 chr15 83176950 83177423 -2518331 + L1PA8 LINE L1 5696 6168 -4 21 0 0 0 chr15 83177423 83177444 -2518310 + AT_rich Low_complexity Low_complexity 1 21 0 1420 285 147 25 chr15 83177457 83178436 -2517318 - HAL1 LINE L1 -1138 1369 272 180 0 0 0 chr15 83178437 83178457 -2517297 + (T)n Simple_repeat Simple_repeat 1 20 0 1830 61 12 8 chr15 83178559 83178805 -2516949 - AluY SINE Alu -58 253 7 27 0 0 0 chr15 83179548 83179575 -2516179 + AT_rich Low_complexity Low_complexity 1 27 0 3435 130 33 12 chr15 83180007 83180109 -2515645 + L1MA4 LINE L1 5682 5780 -520 189 0 0 0 chr15 83180109 83180130 -2515624 + (TA)n Simple_repeat Simple_repeat 2 22 0 3435 130 33 12 chr15 83180130 83180628 -2515126 + L1MA4 LINE L1 5780 6295 -5 22 0 0 0 chr15 83180733 83180755 -2514999 + AT_rich Low_complexity Low_complexity 1 22 0 568 247 119 10 chr15 83181426 83181590 -2514164 + LTR33 LTR ERVL 1 191 -330 324 0 0 0 chr15 83181590 83181626 -2514128 + (GA)n Simple_repeat Simple_repeat 1 36 0 568 247 119 10 chr15 83181626 83181655 -2514099 + LTR33 LTR ERVL 191 215 -306 183 129 0 0 chr15 83181987 83182018 -2513736 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2137 80 7 37 chr15 83182020 83182320 -2513434 - AluY SINE Alu -20 291 1 3083 172 32 37 chr15 83182665 83182884 -2512870 + MLT1E3 LTR MaLR 1 220 -404 2155 129 0 3 chr15 83182884 83183194 -2512560 + AluSq SINE Alu 1 309 -4 3083 172 32 37 chr15 83183194 83183601 -2512153 + MLT1E3 LTR MaLR 220 624 0 750 185 0 12 chr15 83183640 83183802 -2511952 - L1ME1 LINE L1 -338 5828 5669 4908 111 8 19 chr15 83184782 83184990 -2510764 + L1PA16 LINE L1 5409 5618 -548 1998 141 0 26 chr15 83184990 83185295 -2510459 - AluSx SINE Alu -15 297 1 4908 111 8 19 chr15 83185295 83185844 -2509910 + L1PA16 LINE L1 5618 6158 -8 2282 113 0 0 chr15 83185900 83186200 -2509554 + AluSx SINE Alu 1 300 -12 636 246 74 40 chr15 83186285 83186610 -2509144 + L1ME LINE L1 4509 4844 -1302 1247 171 14 9 chr15 83186613 83186835 -2508919 + MSTD LTR MaLR 1 223 -173 264 188 0 0 chr15 83186838 83186907 -2508847 + CT-rich Low_complexity Low_complexity 2 70 0 917 191 40 10 chr15 83186919 83187145 -2508609 + MSTD LTR MaLR 204 396 0 413 255 83 26 chr15 83187247 83187549 -2508205 + L1ME LINE L1 4981 5299 -847 340 299 62 0 chr15 83187648 83187825 -2507929 + L1ME LINE L1 5416 5603 -567 5855 64 1 7 chr15 83187942 83188324 -2507430 + L1PA7 LINE L1 5398 5776 -378 2254 105 0 7 chr15 83188324 83188628 -2507126 + AluY SINE Alu 1 302 -9 5855 64 1 7 chr15 83188628 83189006 -2506748 + L1PA7 LINE L1 5776 6154 0 1147 155 26 23 chr15 83189505 83189769 -2505985 + L1MA6 LINE L1 6031 6295 -5 671 253 92 52 chr15 83190672 83190921 -2504833 + MIR SINE MIR 3 261 -1 378 300 89 39 chr15 83193076 83193256 -2502498 - MIR3 SINE MIR -1 207 19 211 243 178 47 chr15 83193402 83193509 -2502245 + MER5A DNA MER1_type 44 164 -25 180 0 0 0 chr15 83193548 83193568 -2502186 + (A)n Simple_repeat Simple_repeat 1 20 0 203 256 0 0 chr15 83194152 83194191 -2501563 - MIR SINE MIR -141 121 83 266 264 80 24 chr15 83194563 83194688 -2501066 + MER53 DNA DNA 1 132 -57 182 159 14 159 chr15 83195218 83195287 -2500467 + MER5A DNA MER1_type 99 157 -32 206 245 75 0 chr15 83195650 83195703 -2500051 + MER5B DNA MER1_type 122 178 0 1544 157 0 23 chr15 83196415 83196677 -2499077 + AluSx SINE Alu 50 305 -7 203 345 17 0 chr15 83196879 83196937 -2498817 + G-rich Low_complexity Low_complexity 3 61 0 2138 109 0 3 chr15 83197117 83197426 -2498328 + AluSc SINE Alu 1 308 0 208 218 23 0 chr15 83198706 83198793 -2496961 + CT-rich Low_complexity Low_complexity 2 90 0 247 197 307 58 chr15 83199297 83199434 -2496320 + MIR3 SINE MIR 31 201 -7 185 267 0 22 chr15 83200396 83200441 -2495313 + L2 LINE L2 3217 3260 -12 201 195 0 0 chr15 83200475 83200516 -2495238 + GA-rich Low_complexity Low_complexity 2 42 0 2328 71 37 0 chr15 83200521 83200817 -2494937 + AluSp SINE Alu 1 307 -6 24 32 0 0 chr15 83200857 83200888 -2494866 + AT_rich Low_complexity Low_complexity 1 31 0 2041 109 0 56 chr15 83201018 83201321 -2494433 + AluSx SINE Alu 1 286 -26 2134 87 0 93 chr15 83201377 83201710 -2494044 + AluY SINE Alu 1 302 -9 2247 116 0 3 chr15 83201721 83202023 -2493731 + AluSc SINE Alu 1 301 -8 180 200 0 0 chr15 83202171 83202211 -2493543 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr15 83202925 83202959 -2492795 + (TG)n Simple_repeat Simple_repeat 1 34 0 12474 104 9 29 chr15 83203152 83205720 -2490034 - L1P3 LINE L1 -3886 2575 1 268 315 0 56 chr15 83206057 83206130 -2489624 + MER5A DNA MER1_type 55 122 -67 2031 145 7 0 chr15 83206130 83206433 -2489321 - AluJb SINE Alu -7 305 1 268 315 0 56 chr15 83206433 83206467 -2489287 + MER5A DNA MER1_type 122 156 -33 1852 167 17 3 chr15 83207361 83207720 -2488034 + L1MB7 LINE L1 5818 6181 -3 2407 80 0 10 chr15 83207856 83208158 -2487596 - AluY SINE Alu -12 299 1 216 0 0 0 chr15 83210040 83210064 -2485690 + (A)n Simple_repeat Simple_repeat 1 24 0 967 274 85 0 chr15 83210451 83210757 -2484997 + LTR33 LTR ERVL 3 334 -187 375 227 31 0 chr15 83210795 83210892 -2484862 + LTR33 LTR ERVL 422 521 0 286 252 79 0 chr15 83210928 83211055 -2484699 - L1ME2 LINE L1 -9 6155 6019 237 280 273 15 chr15 83212353 83212485 -2483269 + MIR3 SINE MIR 38 203 -5 2370 113 123 3 chr15 83212631 83213013 -2482741 - MSTA LTR MaLR 0 428 1 743 218 96 24 chr15 83213290 83213678 -2482076 + MER77 LTR ERV1 177 599 -6 1790 200 40 33 chr15 83214468 83214956 -2480798 + MER110A LTR ERV1 3 477 -7 1073 211 4 18 chr15 83215297 83215524 -2480230 + MER58A DNA MER1_type 1 224 0 629 203 60 0 chr15 83216068 83216201 -2479553 + L2 LINE L2 2623 2763 -551 1782 239 105 0 chr15 83216201 83216715 -2479039 + MER69 DNA AcHobo 1 568 -1958 1008 165 99 116 chr15 83216713 83217239 -2478515 + MER69 DNA AcHobo 2010 2526 0 * 1220 267 63 18 chr15 83217242 83217765 -2477989 + L2 LINE L2 2763 3311 -2 317 289 44 89 chr15 83218267 83218447 -2477307 + MER5A DNA MER1_type 18 189 0 493 254 59 18 chr15 83218555 83218724 -2477030 + MER5B DNA MER1_type 3 178 0 378 257 96 29 chr15 83218821 83218957 -2476797 - MIR3 SINE MIR -31 177 33 284 372 11 49 chr15 83219153 83219336 -2476418 - MER5A DNA MER1_type 0 189 14 852 252 37 9 chr15 83219403 83219621 -2476133 - MER58A DNA MER1_type 0 224 1 283 172 31 16 chr15 83221675 83221739 -2474015 - MLT1L LTR MaLR -337 278 214 1573 128 0 113 chr15 83221917 83222252 -2473502 + AluJb SINE Alu 1 297 -5 315 0 0 0 chr15 83222962 83222997 -2472757 + (TG)n Simple_repeat Simple_repeat 2 36 0 291 54 0 0 chr15 83223001 83223038 -2472716 + (GA)n Simple_repeat Simple_repeat 2 38 0 2111 132 3 0 chr15 83223050 83223346 -2472408 - AluSx SINE Alu -15 297 1 2705 161 121 89 chr15 83223417 83223613 -2472141 + L1MC3 LINE L1 6907 7095 -690 237 242 16 0 chr15 83223613 83223675 -2472079 + MLT1F1 LTR MaLR 52 114 -453 2705 161 121 89 chr15 83223675 83224258 -2471496 + L1MC3 LINE L1 7095 7774 -11 381 292 10 51 chr15 83224378 83224573 -2471181 + L1MEd LINE L1 1067 1253 -4866 329 227 185 34 chr15 83224604 83224723 -2471031 + L1M4 LINE L1 2318 2454 -4395 544 238 31 65 chr15 83225099 83225315 -2470439 - MLT1J1 LTR MaLR -260 251 5 356 254 67 49 chr15 83226488 83226712 -2469042 + L1M4 LINE L1 4663 4890 -1958 3218 200 70 45 chr15 83226867 83227871 -2467883 + L1 LINE L1 3957 4985 -1161 290 368 8 8 chr15 83228617 83228734 -2467020 + MIR3 SINE MIR 52 168 -40 541 300 57 14 chr15 83230089 83230451 -2465303 - L1MEd LINE L1 -857 1633 1162 245 307 87 7 chr15 83230569 83230719 -2465035 + HAL1 LINE L1 1289 1450 -1057 190 342 86 26 chr15 83230774 83230891 -2464863 - MIR SINE MIR -62 146 23 1064 158 41 54 chr15 83232999 83233220 -2462534 + MER20 DNA MER1_type 2 219 0 340 307 99 0 chr15 83233305 83233406 -2462348 - L2 LINE L2 -2 3270 3160 217 309 73 57 chr15 83234383 83234506 -2461248 - L2 LINE L2 -10 3262 3138 2169 183 8 5 chr15 83235009 83235398 -2460356 + MLT1B LTR MaLR 1 390 0 802 241 23 36 chr15 83236152 83236372 -2459382 - L2 LINE L2 0 3313 3097 536 279 96 14 chr15 83236494 83236702 -2459052 + MIR SINE MIR 32 256 -6 263 372 51 0 chr15 83236728 83236865 -2458889 + MIR SINE MIR 109 252 -10 1571 215 51 15 chr15 83237491 83237520 -2458234 - MLT2F LTR ERVL -14 649 623 342 0 0 0 chr15 83237520 83237558 -2458196 + (TG)n Simple_repeat Simple_repeat 2 39 0 1571 215 51 15 chr15 83237558 83237918 -2457836 - MLT2F LTR ERVL -40 623 246 25 51 0 0 chr15 83237940 83237979 -2457775 + AT_rich Low_complexity Low_complexity 1 39 0 928 78 78 0 chr15 83238212 83238341 -2457413 - MER85 DNA T2_type 0 139 1 23 33 0 0 chr15 83238767 83238797 -2456957 + AT_rich Low_complexity Low_complexity 1 30 0 315 71 0 0 chr15 83239585 83239627 -2456127 + (T)n Simple_repeat Simple_repeat 1 42 0 263 340 110 10 chr15 83241130 83241230 -2454524 + MIR SINE MIR 24 133 -75 261 0 0 0 chr15 83241957 83241986 -2453768 + (TG)n Simple_repeat Simple_repeat 1 29 0 329 222 74 0 chr15 83242651 83242732 -2453022 - L2 LINE L2 -1 3312 3226 448 238 6 81 chr15 83242734 83242894 -2452860 + FRAM SINE Alu 1 145 -31 204 40 0 0 chr15 83242897 83242922 -2452832 + (TTG)n Simple_repeat Simple_repeat 2 26 0 181 192 39 39 chr15 83242924 83242976 -2452778 - L2 LINE L2 -90 3223 3172 202 294 11 76 chr15 83243162 83243254 -2452500 - MIR SINE MIR -63 145 60 21 36 0 0 chr15 83244177 83244205 -2451549 + GC_rich Low_complexity Low_complexity 1 28 0 247 290 93 19 chr15 83244978 83245085 -2450669 - MIR3 SINE MIR 0 208 94 913 199 71 50 chr15 83245369 83245706 -2450048 + MER2 DNA MER2_type 1 344 0 769 281 66 9 chr15 83245888 83246116 -2449638 - MIR SINE MIR -20 242 2 356 316 35 40 chr15 83246431 83246659 -2449095 - MLT1I LTR MaLR -180 229 3 267 338 127 0 chr15 83248406 83248548 -2447206 - L2 LINE L2 -9 3263 3104 23 0 0 0 chr15 83249365 83249388 -2446366 + AT_rich Low_complexity Low_complexity 1 23 0 1210 194 5 0 chr15 83250452 83250669 -2445085 + MER58A DNA MER1_type 1 218 -6 1943 152 7 3 chr15 83251461 83251750 -2444004 + AluSx SINE Alu 5 294 -18 637 269 57 24 chr15 83252683 83252895 -2442859 + MIR SINE MIR 20 238 -24 620 227 16 0 chr15 83252895 83253023 -2442731 - MLT1H LTR MaLR 0 549 420 2491 75 0 0 chr15 83253044 83253352 -2442402 - AluY SINE Alu -3 308 1 314 273 8 53 chr15 83253368 83253500 -2442254 - MLT1H LTR MaLR -123 432 307 323 222 174 28 chr15 83253559 83253703 -2442051 - MLT1H LTR MaLR -255 294 130 344 278 56 63 chr15 83253950 83254076 -2441678 - L2 LINE L2 -7 3306 3182 2241 105 7 3 chr15 83254271 83254575 -2441179 - AluSq SINE Alu -8 305 1 573 208 8 32 chr15 83254607 83254732 -2441022 + FLAM_C SINE Alu 3 124 -9 197 276 13 92 chr15 83255385 83255461 -2440293 - L2 LINE L2 -2 3311 3242 268 276 26 26 chr15 83255783 83255859 -2439895 + L2 LINE L2 3180 3255 -17 206 167 24 0 chr15 83256311 83256353 -2439401 + CT-rich Low_complexity Low_complexity 1 43 0 263 289 56 33 chr15 83256737 83256827 -2438927 - MIR SINE MIR -3 259 168 207 395 53 0 chr15 83257726 83257840 -2437914 - L2 LINE L2 -731 2583 2464 252 261 0 68 chr15 83257893 83257981 -2437773 + MIR SINE MIR 131 212 -50 299 353 39 10 chr15 83258020 83258122 -2437632 + L2 LINE L2 3132 3236 -36 1065 110 0 14 chr15 83258415 83258561 -2437193 + AluSc SINE Alu 60 203 -106 182 333 37 56 chr15 83258629 83258737 -2437017 + L2 LINE L2 3146 3251 -21 514 330 43 9 chr15 83259137 83259367 -2436387 - MIR SINE MIR -12 250 13 910 223 22 11 chr15 83259371 83259555 -2436199 - MER5A DNA MER1_type 0 189 4 994 168 97 11 chr15 83259649 83259856 -2435898 + AluJo SINE Alu 84 306 0 323 304 50 50 chr15 83259963 83260223 -2435531 + MER65A LTR ERV1 186 445 0 2755 247 82 14 chr15 83260672 83261372 -2434382 + L1ME1 LINE L1 3206 4001 -2145 2824 136 9 5 chr15 83261372 83261798 -2433956 - MSTA LTR MaLR 0 428 1 2755 247 82 14 chr15 83261798 83262135 -2433619 + L1ME1 LINE L1 4001 4314 -1832 287 228 38 0 chr15 83262126 83262205 -2433549 + L1M4 LINE L1 5149 5230 -916 * 42274 37 2 6 chr15 83262223 83268396 -2427358 - L1PA3 LINE L1 -1 6154 7 246 208 0 0 chr15 83268391 83268439 -2427315 + L1M4 LINE L1 5206 5253 -893 * 2712 246 49 15 chr15 83268455 83269387 -2426367 + L1ME1 LINE L1 4313 5276 -870 227 255 40 121 chr15 83269401 83269550 -2426204 - L1ME2 LINE L1 -83 6081 5945 2327 232 25 50 chr15 83269554 83270350 -2425404 + L1ME1 LINE L1 5285 6060 -106 245 218 53 123 chr15 83270300 83270470 -2425284 + L1MA10 LINE L1 6170 6327 -7 * 370 289 58 16 chr15 83270692 83270813 -2424941 + MIR3 SINE MIR 37 162 -46 465 343 7 7 chr15 83271663 83271800 -2423954 + MIR3 SINE MIR 22 158 -50 247 216 81 0 chr15 83271960 83272034 -2423720 - MER113 DNA MER1_type? -412 109 30 244 257 68 10 chr15 83272098 83272231 -2423523 + MLT1J2 LTR MaLR 75 219 -190 708 114 7 40 chr15 83272272 83272421 -2423333 + L1PA10 LINE L1 5940 6083 -85 1057 166 6 135 chr15 83272524 83272617 -2423137 - L1 LINE L1 -1438 4708 4605 2109 119 0 0 chr15 83272617 83272903 -2422851 - AluSx SINE Alu -26 286 1 1057 166 6 135 chr15 83272903 83273164 -2422590 - L1 LINE L1 -1541 4605 4400 412 273 197 43 chr15 83273166 83273470 -2422284 - L2 LINE L2 -40 3273 2923 2163 108 0 45 chr15 83273470 83273784 -2421970 + AluSg SINE Alu 1 300 -10 283 284 20 39 chr15 83273813 83273915 -2421839 + MIR3 SINE MIR 102 201 -7 231 36 0 0 chr15 83275651 83275679 -2420075 + (T)n Simple_repeat Simple_repeat 1 28 0 645 253 74 11 chr15 83275699 83275889 -2419865 - MIR SINE MIR -14 248 47 377 307 89 71 chr15 83276274 83276600 -2419154 + L2 LINE L2 2933 3264 -8 1312 122 0 21 chr15 83276932 83277120 -2418634 - AluSg/x SINE Alu -6 306 123 331 320 70 0 chr15 83277201 83277301 -2418453 - MER5B DNA MER1_type -71 107 1 2177 121 0 0 chr15 83278228 83278518 -2417236 + AluSc SINE Alu 1 290 -19 3417 83 20 0 chr15 83279360 83279804 -2415950 + MLT2A2 LTR ERVL 1 453 0 233 271 100 0 chr15 83281922 83281992 -2413762 + L3b LINE CR1 1375 1451 -132 294 323 0 84 chr15 83282144 83282299 -2413455 - MIR SINE MIR -55 207 66 228 312 0 104 chr15 83283659 83283784 -2411970 + L2 LINE L2 2565 2676 -638 193 292 31 0 chr15 83284540 83284605 -2411149 + L2 LINE L2 2980 3046 -226 489 213 0 0 chr15 83285285 83285365 -2410389 + AluJ/FLAM SINE Alu 1 80 -232 1075 278 81 25 chr15 83285465 83286018 -2409736 + L1M4 LINE L1 2339 2929 -3217 1732 171 34 3 chr15 83286018 83286311 -2409443 + AluJb SINE Alu 1 302 -10 1075 278 81 25 chr15 83286311 83286350 -2409404 + L1M4 LINE L1 2929 2964 -3182 * 5193 124 45 40 chr15 83286349 83287536 -2408218 + L1MA7 LINE L1 5098 6288 -3 1645 239 117 27 chr15 83287559 83287981 -2407773 + L1M4 LINE L1 2975 3358 -2788 1334 164 50 0 chr15 83287981 83288262 -2407492 - L1MA8 LINE L1 -1 6290 5996 1645 239 117 27 chr15 83288262 83288695 -2407059 + L1M4 LINE L1 3358 3907 -2239 335 253 32 21 chr15 83288906 83289001 -2406753 + L2 LINE L2 3218 3313 0 300 259 43 86 chr15 83289126 83289288 -2406466 - MLT1J LTR MaLR -332 179 25 2386 62 3 0 chr15 83289536 83289827 -2405927 - AluY SINE Alu -15 296 5 1120 60 0 0 chr15 83290192 83290326 -2405428 + AluSc SINE Alu 1 134 -175 262 0 0 0 chr15 83290326 83290356 -2405398 - L1P3 LINE L1 -512 5660 5631 * 503 60 19 0 chr15 83290341 83290423 -2405331 + L1PA7 LINE L1 6030 6114 -40 414 264 192 0 chr15 83290528 83290653 -2405101 + MER5A DNA MER1_type 40 188 -1 2275 98 0 0 chr15 83290690 83290975 -2404779 - AluSx SINE Alu -27 285 1 180 0 0 0 chr15 83291301 83291321 -2404433 + (A)n Simple_repeat Simple_repeat 1 20 0 39 50 0 0 chr15 83291694 83291754 -2404000 + AT_rich Low_complexity Low_complexity 1 60 0 208 350 128 0 chr15 83291796 83291913 -2403841 - L2 LINE L2 -674 2640 2509 201 330 19 28 chr15 83291934 83292040 -2403714 - L2 LINE L2 -96 3217 3113 1612 147 131 19 chr15 83292509 83292821 -2402933 + MER7A DNA MER2_type 1 345 -1 2352 102 0 0 chr15 83294354 83294657 -2401097 + AluSq SINE Alu 1 303 -10 1686 188 4 0 chr15 83295023 83295299 -2400455 - AluJo SINE Alu -35 277 1 501 273 27 96 chr15 83295700 83295842 -2399912 - L1ME LINE L1 -297 5824 5674 1692 138 78 18 chr15 83295842 83296124 -2399630 + AluSx SINE Alu 1 299 -13 501 273 27 96 chr15 83296124 83296461 -2399293 - L1ME LINE L1 -447 5674 5378 2263 111 16 26 chr15 83296565 83296944 -2398810 + THE1C LTR MaLR 1 375 0 799 263 61 32 chr15 83297439 83297686 -2398068 - MIR SINE MIR -1 261 8 233 326 11 0 chr15 83297765 83297854 -2397900 + GA-rich Low_complexity Low_complexity 3 92 0 770 194 129 40 chr15 83298334 83298535 -2397219 + MER20 DNA MER1_type 1 219 0 2165 116 7 3 chr15 83298654 83298956 -2396798 + AluSx SINE Alu 1 303 -9 300 295 86 9 chr15 83299502 83299607 -2396147 - MIR SINE MIR -114 148 36 241 305 32 0 chr15 83299821 83299916 -2395838 - Charlie7 DNA MER1_type -2513 99 2 589 221 11 50 chr15 83300283 83300464 -2395290 - AluYa5 SINE Alu 0 311 138 807 107 0 8 chr15 83300668 83300790 -2394964 + AluSc SINE Alu 14 134 -175 698 108 27 0 chr15 83300805 83300916 -2394838 + L1PA6 LINE L1 6030 6143 -11 1206 158 0 0 chr15 83300945 83301128 -2394626 + AluSg/x SINE Alu 124 306 -6 679 202 0 0 chr15 83301310 83301439 -2394315 - FLAM_C SINE Alu 0 133 5 728 146 0 69 chr15 83301866 83302010 -2393744 + FLAM_A SINE Alu 6 139 -3 195 290 72 0 chr15 83303173 83303242 -2392512 - L2 LINE L2 -1885 1429 1356 199 262 33 16 chr15 83303529 83303590 -2392164 - L2 LINE L2 -2106 1208 1147 345 339 108 47 chr15 83303961 83304591 -2391163 - L2 LINE L2 -3 3269 2601 448 215 25 16 chr15 83304693 83304814 -2390940 + L1ME4a LINE L1 5545 5666 -455 669 183 0 0 chr15 83304814 83304929 -2390825 + AluSg/x SINE Alu 195 309 0 649 228 149 70 chr15 83304951 83305110 -2390644 + L1ME4a LINE L1 5679 5824 -297 754 183 0 44 chr15 83305110 83305247 -2390507 + FLAM_A SINE Alu 1 131 -2 649 228 149 70 chr15 83305247 83305490 -2390264 + L1ME4a LINE L1 5824 6113 -8 3187 244 83 28 chr15 83306250 83307256 -2388498 + L2 LINE L2 1144 3057 -256 320 83 0 0 chr15 83307256 83307304 -2388450 - MADE1 DNA Mariner -30 50 3 3313 185 43 55 chr15 83307392 83308324 -2387430 - L1MCa LINE L1 -5170 887 46 660 193 6 78 chr15 83308329 83308495 -2387259 + L2 LINE L2 3159 3312 -1 649 308 48 74 chr15 83308539 83308890 -2386864 + L2 LINE L2 2930 3271 -1 1774 233 81 16 chr15 83308934 83309441 -2386313 - MLT1F1 LTR MaLR -25 542 3 2011 111 0 28 chr15 83310543 83310832 -2384922 + AluSq SINE Alu 1 281 -32 319 216 27 45 chr15 83310888 83310999 -2384755 + MIR SINE MIR 98 206 -56 398 264 101 39 chr15 83311832 83312010 -2383744 + MER5A DNA MER1_type 1 189 0 365 325 41 8 chr15 83312145 83312268 -2383486 - L2 LINE L2 -4 3268 3142 1055 186 0 0 chr15 83312731 83312908 -2382846 - MER5B DNA MER1_type 0 178 2 494 279 101 14 chr15 83313802 83314010 -2381744 - MIR SINE MIR 0 262 37 334 316 35 70 chr15 83314087 83314258 -2381496 + MER5B DNA MER1_type 9 173 -5 2342 86 3 13 chr15 83314699 83315013 -2380741 + AluY SINE Alu 1 311 0 532 207 52 9 chr15 83316444 83316560 -2379194 - MIR3 SINE MIR -3 205 85 2367 83 3 3 chr15 83316684 83316984 -2378770 - AluSc SINE Alu -6 303 4 539 271 36 52 chr15 83317186 83317378 -2378376 + MIR SINE MIR 61 249 -13 206 271 49 97 chr15 83317908 83318052 -2377702 + L2 LINE L2 3169 3305 -8 1587 253 140 17 chr15 83318090 83318620 -2377134 - MLT1G1 LTR MaLR 0 595 1 1338 226 64 57 chr15 83319086 83319510 -2376244 - MLT2B1 LTR ERVL 0 520 91 1505 193 54 0 chr15 83319510 83319769 -2375985 + AluJb SINE Alu 7 279 -33 1338 226 64 57 chr15 83319769 83319800 -2375954 - MLT2B1 LTR ERVL -429 91 62 245 79 0 0 chr15 83320025 83320063 -2375691 + L1MC4 LINE L1 7553 7590 -452 967 305 30 44 chr15 83320063 83320499 -2375255 + LTR16B LTR ERVL 4 433 -31 402 186 10 29 chr15 83320505 83320607 -2375147 + L1MC4 LINE L1 7943 8042 0 1898 169 0 13 chr15 83321338 83321639 -2374115 + AluJo SINE Alu 1 297 -15 721 189 61 11 chr15 83321719 83321899 -2373855 + L1MDa LINE L1 2081 2269 -4271 1630 157 139 26 chr15 83321899 83322117 -2373637 + L1MD2 LINE L1 5914 6106 -253 210 91 0 0 chr15 83322117 83322150 -2373604 + (CA)n Simple_repeat Simple_repeat 2 34 0 1630 157 139 26 chr15 83322150 83322320 -2373434 + L1MD2 LINE L1 6106 6346 -13 21 57 0 0 chr15 83323176 83323211 -2372543 + AT_rich Low_complexity Low_complexity 1 35 0 511 158 40 10 chr15 83323469 83323570 -2372184 + L1MC2 LINE L1 6233 6336 -8 205 324 72 18 chr15 83324568 83324679 -2371075 + MIR SINE MIR 34 150 -112 385 272 0 22 chr15 83325352 83325444 -2370310 - MIR SINE MIR -90 118 29 2212 103 7 0 chr15 83325704 83325994 -2369760 - AluSq SINE Alu -20 293 2 224 296 122 32 chr15 83327502 83327700 -2368054 + MIR SINE MIR 5 216 -46 492 280 37 115 chr15 83327738 83328113 -2367641 - L2 LINE L2 -84 3188 2843 278 219 62 0 chr15 83328133 83328197 -2367557 - MER94 DNA DNA -66 68 1 183 333 115 10 chr15 83328197 83328293 -2367461 - L2 LINE L2 -513 2801 2696 1582 132 79 84 chr15 83328560 83328857 -2366897 - MLT2D LTR ERVL -37 377 81 1525 154 0 0 chr15 83328857 83329084 -2366670 + AluSg/x SINE Alu 84 310 0 1582 132 79 84 chr15 83329084 83329165 -2366589 - MLT2D LTR ERVL -333 81 1 356 342 107 0 chr15 83330045 83330232 -2365522 + L3b LINE CR1 1247 1453 -130 1078 173 128 48 chr15 83331514 83331717 -2364037 + MLT1B LTR MaLR 4 189 -201 405 0 0 0 chr15 83331717 83331762 -2363992 + (CA)n Simple_repeat Simple_repeat 2 46 0 1078 173 128 48 chr15 83331762 83331916 -2363838 + MLT1B LTR MaLR 189 390 0 526 278 142 0 chr15 83332113 83332292 -2363462 + MIR SINE MIR 42 243 -19 1282 242 59 10 chr15 83332594 83332986 -2362768 - LTR33 LTR ERVL -97 424 14 1658 206 0 0 chr15 83335490 83335803 -2359951 + AluJo SINE Alu 1 313 0 28 48 0 0 chr15 83335806 83335848 -2359906 + AT_rich Low_complexity Low_complexity 1 42 0 303 257 137 68 chr15 83335879 83336186 -2359568 + L1MC/D LINE L1 4966 5293 -853 384 320 150 18 chr15 83336188 83336569 -2359185 + L1MC/D LINE L1 5304 5734 -2074 232 259 0 25 chr15 83336630 83336711 -2359043 + L1MC/D LINE L1 5852 5930 -1878 2542 61 0 0 chr15 83338190 83338500 -2357254 - AluY SINE Alu -1 310 1 207 0 0 0 chr15 83339398 83339421 -2356333 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2052 117 0 0 chr15 83339423 83339705 -2356049 - AluSx SINE Alu -30 282 1 22 65 0 0 chr15 83340732 83340763 -2354991 + AT_rich Low_complexity Low_complexity 1 31 0 304 250 125 27 chr15 83341704 83341816 -2353938 - MIR SINE MIR -66 142 20 407 330 37 42 chr15 83341868 83342083 -2353671 + MIR SINE MIR 18 231 -31 1391 218 44 49 chr15 83342488 83342855 -2352899 + MLT1A1 LTR MaLR 1 365 0 824 274 43 4 chr15 83344571 83344805 -2350949 - MIR SINE MIR 0 262 20 2216 99 10 10 chr15 83344950 83345253 -2350501 + AluSc SINE Alu 1 303 -6 225 258 22 22 chr15 83345561 83345650 -2350104 + GA-rich Low_complexity Low_complexity 3 91 0 253 320 131 10 chr15 83345870 83346040 -2349714 - MIR3 SINE MIR -60 202 4 544 278 48 48 chr15 83346197 83346424 -2349330 + MIR SINE MIR 36 262 0 240 54 0 108 chr15 83347016 83347090 -2348664 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 275 321 0 12 chr15 83347399 83347480 -2348274 - MER5B DNA MER1_type -98 80 1 2152 120 7 0 chr15 83347524 83347823 -2347931 - AluSx SINE Alu -6 306 6 272 233 48 39 chr15 83347945 83348048 -2347706 - L1ME LINE L1 -460 5661 5558 346 253 71 26 chr15 83349054 83349197 -2346557 - MIR SINE MIR -40 168 19 2423 70 0 10 chr15 83349390 83349704 -2346050 + AluY SINE Alu 1 311 0 298 210 12 62 chr15 83349966 83350047 -2345707 + L2 LINE L2 3191 3267 -5 * 392 292 125 7 chr15 83350037 83350181 -2345573 + MIR3 SINE MIR 12 172 -36 2200 102 7 7 chr15 83350240 83350544 -2345210 - AluSp SINE Alu -9 304 1 254 281 61 89 chr15 83350641 83350887 -2344867 + MLT1K LTR MaLR 192 430 -158 619 193 0 62 chr15 83351358 83351411 -2344343 + MER96B DNA MER1_type? 247 302 -115 2473 58 3 13 chr15 83351411 83351723 -2344031 - AluY SINE Alu -2 309 1 619 193 0 62 chr15 83351723 83351845 -2343909 + MER96B DNA MER1_type? 302 411 -6 1816 86 93 15 chr15 83352096 83352365 -2343389 + AluY SINE Alu 1 290 -21 303 260 110 47 chr15 83353484 83353611 -2342143 - MIR SINE MIR -78 184 50 186 103 0 0 chr15 83353635 83353664 -2342090 + (TG)n Simple_repeat Simple_repeat 2 30 0 228 119 0 119 chr15 83353923 83353990 -2341764 - L1MC5 LINE L1 -695 7266 7208 592 229 0 0 chr15 83354019 83354137 -2341617 - MER3 DNA MER1_type -85 124 7 1804 152 40 10 chr15 83354401 83354703 -2341051 - AluJb SINE Alu -1 311 1 461 206 28 37 chr15 83355225 83355332 -2340422 - MER7A DNA MER2_type 0 346 241 727 83 220 0 chr15 83355333 83355465 -2340289 + MER30 DNA MER1_type 70 230 0 828 175 76 0 chr15 83355465 83355636 -2340118 - MER7A DNA MER2_type -164 182 1 190 293 0 0 chr15 83356297 83356338 -2339416 - MIR SINE MIR -216 46 6 379 207 103 0 chr15 83357942 83358029 -2337725 + MER46A DNA MER2_type 1 96 -140 219 69 0 0 chr15 83358057 83358086 -2337668 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 408 302 101 31 chr15 83358142 83358665 -2337089 + L1ME4a LINE L1 5490 6049 -72 1785 186 4 0 chr15 83358707 83358986 -2336768 + AluJo SINE Alu 2 281 -31 1645 193 70 3 chr15 83359196 83359538 -2336216 - MLT1A1 LTR MaLR 0 365 1 191 314 128 0 chr15 83360787 83360873 -2334881 - MER5A DNA MER1_type -30 159 63 * 277 226 32 0 chr15 83360814 83360876 -2334878 + MER5A DNA MER1_type 78 141 -48 29 47 0 0 chr15 83360888 83360931 -2334823 + AT_rich Low_complexity Low_complexity 1 43 0 745 206 139 50 chr15 83360948 83361249 -2334505 - L1MC5 LINE L1 -122 7839 7512 386 291 138 25 chr15 83361971 83362174 -2333580 - MIR SINE MIR 0 262 37 287 188 0 0 chr15 83362421 83362469 -2333285 - L2 LINE L2 -5 3267 3220 312 27 0 0 chr15 83363220 83363257 -2332497 + (CA)n Simple_repeat Simple_repeat 1 37 0 414 0 0 0 chr15 83363394 83363440 -2332314 + (CA)n Simple_repeat Simple_repeat 2 47 0 361 288 89 107 chr15 83363811 83364315 -2331439 + L1M2 LINE L1 527 1021 -5828 5106 105 33 14 chr15 83364423 83365221 -2330533 - L1PA15 LINE L1 -77 6088 5276 1629 181 0 26 chr15 83365430 83365734 -2330020 + AluJb SINE Alu 1 296 -16 1494 188 9 54 chr15 83365788 83366059 -2329695 + MER2 DNA MER2_type 15 270 -75 2296 108 0 0 chr15 83366059 83366356 -2329398 - AluSg SINE Alu -13 297 1 1494 188 9 54 chr15 83366356 83366419 -2329335 + MER2 DNA MER2_type 270 334 -11 442 251 288 0 chr15 83366802 83366965 -2328789 + MIR SINE MIR 44 253 -9 267 389 38 11 chr15 83367110 83367295 -2328459 - MIR3 SINE MIR -3 205 16 363 321 44 0 chr15 83368199 83368336 -2327418 + L3 LINE CR1 1143 1285 -292 2263 111 0 0 chr15 83368647 83368945 -2326809 + AluSc SINE Alu 1 298 -11 594 242 56 6 chr15 83368947 83369108 -2326646 + MIR SINE MIR 84 252 -10 2634 74 17 6 chr15 83369273 83369624 -2326130 + THE1A LTR MaLR 1 355 0 10796 109 27 0 chr15 83369624 83371163 -2324591 + THE1A-int LTR MaLR 1 1580 0 2704 96 0 0 chr15 83371163 83371518 -2324236 + THE1A LTR MaLR 1 355 0 1787 187 66 62 chr15 83372104 83372607 -2323147 - MLT1D LTR MaLR 0 505 1 388 301 69 12 chr15 83372645 83372813 -2322941 + L1ME LINE L1 5269 5452 -669 25 0 0 0 chr15 83373515 83373540 -2322214 + GC_rich Low_complexity Low_complexity 1 25 0 189 214 0 0 chr15 83377233 83377275 -2318479 + (TA)n Simple_repeat Simple_repeat 1 42 0 238 204 93 0 chr15 83377722 83377776 -2317978 + L2 LINE L2 3213 3271 -1 244 250 0 0 chr15 83378683 83378731 -2317023 - MIR SINE MIR -12 250 203 397 218 73 8 chr15 83378816 83378940 -2316814 - L1ME4a LINE L1 -260 5861 5730 281 352 104 11 chr15 83379326 83379508 -2316246 + MIR3 SINE MIR 1 199 -9 1517 176 36 26 chr15 83379720 83380027 -2315727 - AluJo SINE Alu -2 310 1 1264 232 90 39 chr15 83380445 83380571 -2315183 + Charlie4a DNA MER1_type 29 147 -1814 1401 175 193 23 chr15 83380571 83380970 -2314784 - MLT1C LTR MaLR 0 467 1 1264 232 90 39 chr15 83380970 83381300 -2314454 + Charlie4a DNA MER1_type 147 508 0 327 269 101 8 chr15 83381313 83381432 -2314322 + HAL1 LINE L1 1137 1266 -1241 302 309 39 28 chr15 83381465 83381643 -2314111 + L1 LINE L1 3747 3926 -2220 766 74 0 16 chr15 83382043 83382164 -2313590 - AluY SINE Alu -2 309 191 219 333 132 37 chr15 83383622 83384078 -2311676 - L2 LINE L2 -825 2489 1991 1372 107 56 5 chr15 83384199 83384415 -2311339 + MER30 DNA MER1_type 4 230 0 480 221 76 23 chr15 83384629 83384760 -2310994 - MIR SINE MIR -73 189 52 21 36 0 0 chr15 83385568 83385596 -2310158 + AT_rich Low_complexity Low_complexity 1 28 0 289 292 35 18 chr15 83385624 83385737 -2310017 + MIR SINE MIR 57 171 -91 21 0 0 0 chr15 83386103 83386124 -2309630 + AT_rich Low_complexity Low_complexity 1 21 0 1901 140 3 7 chr15 83386839 83387158 -2308596 + AluSx SINE Alu 1 318 0 343 297 29 40 chr15 83387781 83387956 -2307798 - L1ME4a LINE L1 -371 5750 5578 410 281 62 41 chr15 83388110 83388256 -2307498 - MIR SINE MIR -40 222 74 258 207 52 0 chr15 83388288 83388346 -2307408 + MER112 DNA MER1_type 1 61 -199 2289 78 7 13 chr15 83389415 83389723 -2306031 - AluY SINE Alu -5 306 1 1508 169 14 34 chr15 83389732 83390028 -2305726 - AluJo SINE Alu -22 290 1 666 188 144 33 chr15 83390184 83390365 -2305389 + MER3 DNA MER1_type 8 208 -1 272 203 0 51 chr15 83390321 83390380 -2305374 - MER3 DNA MER1_type -120 89 34 * 2280 100 7 3 chr15 83390380 83390689 -2305065 - AluSx SINE Alu -2 310 1 264 254 75 0 chr15 83390820 83390887 -2304867 - MER113 DNA MER1_type? -5 516 445 1241 155 170 17 chr15 83390887 83391224 -2304530 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr15 83391509 83391537 -2304217 + AT_rich Low_complexity Low_complexity 1 28 0 210 222 0 0 chr15 83391958 83391994 -2303760 - MIR SINE MIR -4 258 223 184 324 118 10 chr15 83392006 83392108 -2303646 - L2 LINE L2 -12 3260 3148 5224 115 34 5 chr15 83392240 83392759 -2302995 - L1PA16 LINE L1 -9 6157 5655 2198 113 0 3 chr15 83392759 83393052 -2302702 - AluSx SINE Alu -20 292 1 5224 115 34 5 chr15 83393052 83393689 -2302065 - L1PA16 LINE L1 -511 5655 4972 371 186 3 0 chr15 83393689 83393763 -2301991 + L1PA16 LINE L1 4917 4992 -1154 342 0 0 0 chr15 83394003 83394041 -2301713 + (TA)n Simple_repeat Simple_repeat 2 39 0 3415 199 167 25 chr15 83394959 83395967 -2299787 - L1MC4a LINE L1 0 7808 6658 2053 127 0 0 chr15 83395994 83396278 -2299476 - AluSg SINE Alu -26 284 1 256 356 74 7 chr15 83396281 83396430 -2299324 - MIR SINE MIR -103 159 1 22 70 0 0 chr15 83396508 83396551 -2299203 + AT_rich Low_complexity Low_complexity 1 43 0 216 326 0 0 chr15 83396594 83396643 -2299111 - L2 LINE L2 -15 3257 3209 21 0 0 0 chr15 83396809 83396830 -2298924 + AT_rich Low_complexity Low_complexity 1 21 0 331 266 154 14 chr15 83396951 83397094 -2298660 - MIR SINE MIR -11 251 89 362 291 61 80 chr15 83397554 83397756 -2297998 + L3 LINE CR1 1366 1565 -12 1603 166 20 36 chr15 83397756 83398058 -2297696 - AluJo SINE Alu -15 297 1 1992 130 14 0 chr15 83398554 83398680 -2297074 + AluSx SINE Alu 1 124 -188 291 54 0 0 chr15 83398680 83398717 -2297037 + (CA)n Simple_repeat Simple_repeat 2 38 0 1992 130 14 0 chr15 83398717 83398883 -2296871 + AluSx SINE Alu 124 297 -15 1627 133 49 78 chr15 83399374 83399759 -2295995 - THE1C LTR MaLR 0 375 2 433 259 141 7 chr15 83400045 83400180 -2295574 + MIR SINE MIR 36 188 -74 229 257 19 48 chr15 83400360 83400465 -2295289 - HAL1b LINE L1 -56 1292 1191 263 321 43 38 chr15 83400586 83400770 -2294984 - L1MC/D LINE L1 -2039 5769 5585 378 263 88 12 chr15 83400775 83400946 -2294808 - L1MC/D LINE L1 -861 5285 5102 265 273 77 87 chr15 83401177 83401360 -2294394 - MER5A DNA MER1_type -2 187 7 24 0 0 0 chr15 83401406 83401430 -2294324 + AT_rich Low_complexity Low_complexity 1 24 0 800 289 116 14 chr15 83401552 83402110 -2293644 - L2 LINE L2 -1 3312 2689 1381 169 92 32 chr15 83402326 83402610 -2293144 + AluJo SINE Alu 4 304 -8 454 264 8 23 chr15 83403945 83404074 -2291680 + L2 LINE L2 2497 2623 -691 1063 158 28 167 chr15 83404078 83404504 -2291250 + MLT1A1 LTR MaLR 1 432 0 486 264 269 5 chr15 83405063 83405260 -2290494 - MIR SINE MIR 0 262 14 2367 181 113 24 chr15 83405299 83405936 -2289818 + L1ME1 LINE L1 5254 5947 -217 251 246 49 0 chr15 83405947 83406008 -2289746 + L1ME1 LINE L1 6015 6078 -88 382 147 67 0 chr15 83406011 83406086 -2289668 - MLT1A2 LTR MaLR 0 374 295 893 208 43 10 chr15 83407164 83407371 -2288383 + MER58 DNA MER1_type 1 214 -127 293 329 54 30 chr15 83407811 83407978 -2287776 + MIR3 SINE MIR 38 208 0 236 89 0 22 chr15 83409685 83409730 -2286024 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 509 101 0 0 chr15 83410191 83410260 -2285494 + Alu SINE Alu 1 69 -240 26 30 0 0 chr15 83410814 83410847 -2284907 + AT_rich Low_complexity Low_complexity 1 33 0 2155 107 13 10 chr15 83412200 83412508 -2283246 + AluSq SINE Alu 1 309 -4 612 259 59 79 chr15 83412540 83412845 -2282909 - L2 LINE L2 -1 3312 3014 1323 220 40 38 chr15 83414418 83414791 -2280963 - MLT1A2 LTR MaLR 0 374 1 266 292 76 7 chr15 83415115 83415259 -2280495 - L1M4 LINE L1 -2015 4131 3978 5891 215 77 59 chr15 83415333 83416340 -2279414 - L1MD2 LINE L1 -2 6357 5370 1882 112 0 0 chr15 83416340 83416590 -2279164 - AluSx SINE Alu -62 250 1 5891 215 77 59 chr15 83416590 83417265 -2278489 - L1MD2 LINE L1 -989 5370 4709 351 0 0 0 chr15 83417265 83417304 -2278450 + (TG)n Simple_repeat Simple_repeat 2 40 0 2156 85 3 3 chr15 83417307 83417590 -2278164 - AluSq SINE Alu -30 283 1 5891 215 77 59 chr15 83417590 83419168 -2276586 - L1MD2 LINE L1 -1651 4708 3012 30 45 0 0 chr15 83419201 83419245 -2276509 + AT_rich Low_complexity Low_complexity 1 44 0 262 314 45 12 chr15 83419805 83420047 -2275707 - L1M4 LINE L1 -2659 3487 3238 1605 231 67 44 chr15 83420070 83420621 -2275133 - L1MC4 LINE L1 -38 8004 7441 308 264 88 0 chr15 83420610 83420701 -2275053 + L1MC4 LINE L1 6879 6977 -1065 * 295 54 0 71 chr15 83420758 83420814 -2274940 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 407 309 88 30 chr15 83420903 83421462 -2274292 - L1M4 LINE L1 -3038 3108 2518 255 226 19 0 chr15 83421974 83422027 -2273727 + CT-rich Low_complexity Low_complexity 3 56 0 23 33 0 0 chr15 83422335 83422365 -2273389 + AT_rich Low_complexity Low_complexity 1 30 0 307 267 80 0 chr15 83423007 83423082 -2272672 - MIR SINE MIR -7 255 175 21 57 0 0 chr15 83423501 83423536 -2272218 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr15 83423898 83423921 -2271833 + (T)n Simple_repeat Simple_repeat 1 23 0 2367 145 45 37 chr15 83424872 83425334 -2270420 - L1PA16 LINE L1 -4 6162 5697 21 0 0 0 chr15 83425522 83425543 -2270211 + AT_rich Low_complexity Low_complexity 1 21 0 2112 110 7 0 chr15 83425814 83426106 -2269648 - AluSq SINE Alu -18 295 2 1628 213 104 8 chr15 83426266 83426660 -2269094 + MER63B DNA MER1_type 1 432 -4 257 229 0 0 chr15 83426818 83426866 -2268888 - L2 LINE L2 -495 2819 2772 808 264 59 57 chr15 83427328 83427752 -2268002 + L1MC4 LINE L1 7618 8042 0 264 363 25 19 chr15 83427778 83427938 -2267816 - MIR SINE MIR -37 225 65 2074 120 0 3 chr15 83428017 83428324 -2267430 - AluSx SINE Alu 0 306 1 601 261 33 13 chr15 83429949 83430102 -2265652 + MER5B DNA MER1_type 1 156 -22 395 261 0 58 chr15 83430303 83430441 -2265313 - MER5B DNA MER1_type -48 130 1 407 138 0 0 chr15 83431620 83431678 -2264076 + MER46B DNA MER2_type 1 58 -303 725 145 40 0 chr15 83431678 83431802 -2263952 - FLAM_C SINE Alu -14 129 1 1574 147 89 7 chr15 83431802 83432094 -2263660 + MER46B DNA MER2_type 45 235 -1 680 203 99 33 chr15 83432133 83432315 -2263439 - MLT2C1 LTR ERVL -61 336 143 * 1414 228 71 16 chr15 83432293 83432604 -2263150 + MLT1F LTR MaLR 188 515 -27 814 289 45 32 chr15 83432626 83433101 -2262653 + MLT1F1-int LTR MaLR 10 609 -762 239 355 145 0 chr15 83433271 83433409 -2262345 + MLT1F1-int LTR MaLR 700 857 -514 355 279 21 129 chr15 83433533 83433773 -2261981 + MLT1F1-int LTR MaLR 973 1186 -185 236 244 23 23 chr15 83433865 83433951 -2261803 + MLT1F1-int LTR MaLR 1629 1714 -21 2404 227 35 5 chr15 83433976 83434527 -2261227 + MLT1F1 LTR MaLR 1 567 0 185 237 85 17 chr15 83434995 83435054 -2260700 - L2 LINE L2 0 3313 3251 1759 145 24 20 chr15 83435390 83435686 -2260068 - AluJb SINE Alu -13 299 3 203 218 55 0 chr15 83436380 83436435 -2259319 + T-rich Low_complexity Low_complexity 5 62 0 346 278 152 40 chr15 83436450 83436734 -2259020 - L1MC/D LINE L1 -476 5645 5366 299 263 18 53 chr15 83436973 83437087 -2258667 - L2 LINE L2 -655 2659 2550 22 35 0 0 chr15 83437265 83437294 -2258460 + AT_rich Low_complexity Low_complexity 1 29 0 406 196 206 37 chr15 83437301 83437408 -2258346 + FLAM_A SINE Alu 3 127 -6 * 449 143 185 0 chr15 83437403 83437522 -2258232 + Charlie2 DNA MER1_type 2130 2270 -592 28 0 0 0 chr15 83437522 83437550 -2258204 + AT_rich Low_complexity Low_complexity 1 28 0 390 270 87 10 chr15 83437695 83437891 -2257863 - L1ME4a LINE L1 -205 6310 6100 * 898 112 28 0 chr15 83437890 83438019 -2257735 + L1PB1 LINE L1 5645 5780 -371 345 47 0 0 chr15 83438019 83438062 -2257692 + (TG)n Simple_repeat Simple_repeat 2 44 0 898 112 28 0 chr15 83438062 83438075 -2257679 + L1PB1 LINE L1 5780 5791 -360 191 74 19 56 chr15 83438075 83438129 -2257625 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 2442 69 25 30 chr15 83438219 83438581 -2257173 + L1PB1 LINE L1 5791 6150 -1 253 231 127 37 chr15 83438600 83438734 -2257020 - L1ME4a LINE L1 -407 6108 5963 28 0 0 0 chr15 83439365 83439393 -2256361 + AT_rich Low_complexity Low_complexity 1 28 0 1972 111 3 37 chr15 83439576 83439874 -2255880 + AluSq SINE Alu 20 307 -6 26 0 0 0 chr15 83440759 83440785 -2254969 + AT_rich Low_complexity Low_complexity 1 26 0 1568 239 134 75 chr15 83441775 83442170 -2253584 - L1ME4a LINE L1 -2055 4485 4115 2112 104 13 10 chr15 83442170 83442468 -2253286 - AluSg SINE Alu -11 299 1 1568 239 134 75 chr15 83442468 83443133 -2252621 - L1ME4a LINE L1 -2425 4115 3362 377 255 167 5 chr15 83443274 83443466 -2252288 - L1ME4a LINE L1 -3265 3275 3053 626 257 151 32 chr15 83443472 83443921 -2251833 - L1MEc LINE L1 -3716 2848 2365 308 183 95 66 chr15 83444176 83444313 -2251441 - L1M1 LINE L1 -4601 2964 2824 305 245 95 34 chr15 83444348 83444495 -2251259 - L1MEc LINE L1 -4823 1717 1562 361 174 14 14 chr15 83445417 83445486 -2250268 - MIR SINE MIR -22 240 172 28 48 0 0 chr15 83445545 83445587 -2250167 + AT_rich Low_complexity Low_complexity 1 42 0 932 238 14 14 chr15 83446188 83446398 -2249356 + MIR SINE MIR 7 216 -46 1551 225 73 37 chr15 83447137 83447591 -2248163 - LTR40a LTR ERVL -41 478 9 1358 199 88 0 chr15 83447694 83447966 -2247788 + AluJb SINE Alu 1 296 -16 571 282 167 31 chr15 83448602 83449400 -2246354 - L1M4 LINE L1 -869 5277 4372 264 30 0 0 chr15 83450054 83450087 -2245667 + (TG)n Simple_repeat Simple_repeat 2 34 0 280 235 25 67 chr15 83450312 83450431 -2245323 + L1MC5 LINE L1 7813 7926 -35 770 193 36 12 chr15 83450528 83450845 -2244909 - L1MB7 LINE L1 -16 6168 5719 1788 153 44 82 chr15 83451735 83452140 -2243614 - MLT1B LTR MaLR 0 390 1 673 139 49 28 chr15 83452144 83452288 -2243466 - MLT1B-int LTR MaLR -4 1367 1221 1295 241 58 6 chr15 83452288 83452616 -2243138 - MLT2D LTR ERVL -69 345 1 197 33 33 0 chr15 83454662 83454692 -2241062 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2357 80 3 3 chr15 83456592 83456893 -2238861 - AluSq SINE Alu -12 301 1 251 248 181 0 chr15 83458938 83459043 -2236711 - MIR SINE MIR -58 204 81 1617 185 10 7 chr15 83459637 83459940 -2235814 - AluJo SINE Alu -8 304 1 1040 227 34 0 chr15 83661039 83661277 -2034477 + L1MA7 LINE L1 6043 6288 -3 2122 113 0 0 chr15 83661307 83661640 -2034114 + AluY SINE Alu 1 333 0 1156 273 50 34 chr15 83663644 83664084 -2031670 + L1MD2 LINE L1 17 463 -6077 3102 261 47 30 chr15 83664119 83664622 -2031132 + L1MD2 LINE L1 2998 3491 -3049 1839 166 3 0 chr15 83664622 83664939 -2030815 - AluSx SINE Alu 0 312 1 3102 261 47 30 chr15 83664939 83665617 -2030137 + L1MD2 LINE L1 3491 4200 -2340 1407 157 18 18 chr15 83665722 83665951 -2029803 - Tigger4(Zombi) DNA MER2_type -2502 229 1 4562 233 58 61 chr15 83665961 83666544 -2029210 - L1MC4a LINE L1 -58 7750 7167 2195 119 0 0 chr15 83666544 83666837 -2028917 + AluSg SINE Alu 3 295 -15 4562 233 58 61 chr15 83666837 83667742 -2028012 - L1MC4a LINE L1 -641 7167 6267 393 313 105 35 chr15 83667897 83668239 -2027515 - MLT1J1 LTR MaLR -61 385 20 538 293 175 17 chr15 83669370 83669667 -2026087 + L2 LINE L2 2967 3310 -3 1574 6 0 0 chr15 83669933 83670103 -2025651 + AluY SINE Alu 134 303 -8 518 382 13 9 chr15 83670368 83670596 -2025158 + MIR SINE MIR 3 231 -31 225 83 0 0 chr15 83670715 83670751 -2025003 + (TC)n Simple_repeat Simple_repeat 2 37 0 1239 134 3 0 chr15 83671644 83672003 -2023751 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 585 179 0 11 chr15 83672141 83672236 -2023518 + AluJo/FLAM SINE Alu 32 125 -187 346 62 0 0 chr15 83672236 83672284 -2023470 - AluSc SINE Alu -5 294 247 4178 202 78 33 chr15 83672419 83672473 -2023281 + L1MD2 LINE L1 5196 5246 -1507 2339 57 3 3 chr15 83672473 83672789 -2022965 - AluY SINE Alu 0 316 1 4178 202 78 33 chr15 83672789 83674206 -2021548 + L1MD2 LINE L1 5246 6743 -10 2120 163 98 28 chr15 83674223 83674623 -2021131 + MSTA LTR MaLR 1 428 0 2312 102 0 0 chr15 83674769 83675062 -2020692 + AluSx SINE Alu 1 293 -19 188 246 98 16 chr15 83676078 83676139 -2019615 - MIR SINE MIR -147 115 50 2408 88 0 0 chr15 83676267 83676573 -2019181 + AluSg SINE Alu 1 306 -4 1530 152 4 8 chr15 83677625 83677889 -2017865 + AluJo SINE Alu 41 303 -9 342 0 0 0 chr15 83678411 83678449 -2017305 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 118 0 59 chr15 83678466 83678500 -2017254 - MIR SINE MIR -115 147 116 615 153 0 108 chr15 83679656 83679813 -2015941 + L1MA4 LINE L1 6155 6294 -6 220 162 0 0 chr15 83679986 83680023 -2015731 - L2 LINE L2 0 3272 3236 2002 115 28 0 chr15 83681112 83681398 -2014356 + AluSq SINE Alu 1 294 -19 222 37 0 0 chr15 83681850 83681877 -2013877 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr15 83683216 83683239 -2012515 + AT_rich Low_complexity Low_complexity 1 23 0 2328 184 28 23 chr15 83683239 83683523 -2012231 - L1MB3 LINE L1 -3 6180 5892 1929 141 3 26 chr15 83683523 83683827 -2011927 - AluJo SINE Alu -14 298 2 2328 184 28 23 chr15 83683827 83684015 -2011739 - L1MB3 LINE L1 -291 5892 5706 555 239 18 18 chr15 83684115 83684228 -2011526 - FRAM SINE Alu -63 113 1 3628 224 38 32 chr15 83684230 83684398 -2011356 - L1MB3 LINE L1 -959 5187 5021 2312 108 0 3 chr15 83684398 83684703 -2011051 + AluSp SINE Alu 3 306 -7 3628 224 38 32 chr15 83684703 83685581 -2010173 - L1MB3 LINE L1 -1125 5021 4135 308 269 13 13 chr15 83688053 83688131 -2007623 - MIR SINE MIR -122 140 63 1288 263 78 21 chr15 83688365 83688791 -2006963 + L1ME2 LINE L1 19 468 -5958 679 160 0 0 chr15 83688794 83688894 -2006860 + FLAM_A SINE Alu 2 101 -41 24 0 0 0 chr15 83688919 83688943 -2006811 + AT_rich Low_complexity Low_complexity 1 24 0 4488 207 71 19 chr15 83688943 83690590 -2005164 + L1MCb LINE L1 404 2140 -4424 249 341 24 16 chr15 83691076 83691202 -2004552 - MIR SINE MIR 0 262 136 26 0 0 0 chr15 83693787 83693813 -2001941 + AT_rich Low_complexity Low_complexity 1 26 0 1784 257 66 10 chr15 83694015 83694621 -2001133 + L1ME2 LINE L1 781 1420 -5187 * 6697 243 67 29 chr15 83694593 83695599 -2000155 + L1ME2 LINE L1 3176 4142 -2304 2508 60 3 0 chr15 83695599 83695901 -1999853 + AluY SINE Alu 1 303 -8 6697 243 67 29 chr15 83695901 83697632 -1998122 + L1ME2 LINE L1 4142 6018 -428 1269 218 7 41 chr15 83697666 83697960 -1997794 - MLT1A1 LTR MaLR -20 345 62 1036 214 62 14 chr15 83697960 83698281 -1997473 - MSTD LTR MaLR -2 394 1 6169 233 98 18 chr15 83698289 83699876 -1995878 - MSTD-int LTR MaLR -8 1727 13 980 202 177 61 chr15 83699896 83700223 -1995531 - MLT1A1 LTR MaLR 0 365 1 351 153 51 0 chr15 83700224 83700283 -1995471 - MLT1A1 LTR MaLR -307 67 6 785 242 71 76 chr15 83700284 83700677 -1995077 + L1ME2 LINE L1 6020 6410 -34 1175 203 0 0 chr15 83700677 83700894 -1994860 + L1PA16 LINE L1 5950 6166 0 189 175 0 0 chr15 83701569 83701609 -1994145 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 214 391 29 10 chr15 83702142 83702349 -1993405 - L2 LINE L2 -653 2661 2451 1449 162 26 0 chr15 83702694 83702922 -1992832 - MER46A DNA MER2_type -1 235 2 244 323 75 25 chr15 83703363 83703524 -1992230 - L2 LINE L2 -190 3082 2914 511 288 50 40 chr15 83703553 83703751 -1992003 + MIR SINE MIR 14 213 -49 288 296 10 10 chr15 83703887 83703985 -1991769 - L1ME1 LINE L1 -6 6160 6063 425 211 98 16 chr15 83703985 83704108 -1991646 + MSTB LTR MaLR 1 133 -293 1466 172 51 65 chr15 83704219 83704504 -1991250 + MSTB LTR MaLR 74 355 -71 2372 88 13 0 chr15 83704504 83704811 -1990943 - AluY SINE Alu 0 311 1 1466 172 51 65 chr15 83704811 83704879 -1990875 + MSTB LTR MaLR 355 422 -4 2488 206 80 7 chr15 83704883 83705244 -1990510 - L1ME1 LINE L1 -99 6067 5734 2047 94 0 0 chr15 83705244 83705530 -1990224 - AluSq SINE Alu 0 313 28 2488 206 80 7 chr15 83705530 83705879 -1989875 - L1ME1 LINE L1 -432 5734 5184 871 181 0 0 chr15 83707176 83707309 -1988445 - FLAM_C SINE Alu 0 133 1 191 296 131 34 chr15 83707350 83707556 -1988198 - L2 LINE L2 -618 2696 2471 440 327 12 6 chr15 83709118 83709283 -1986471 + MIR SINE MIR 78 243 -19 1857 126 159 73 chr15 83709290 83709662 -1986092 - MER4A LTR ERV1 0 664 261 632 130 0 20 chr15 83709662 83709762 -1985992 - MER4A LTR ERV1 -566 98 1 216 313 0 30 chr15 83711780 83711946 -1983808 + (CAGCC)n Simple_repeat Simple_repeat 1 161 0 2315 71 3 3 chr15 83713188 83713504 -1982250 - AluSp SINE Alu 0 316 1 213 319 14 0 chr15 83714168 83714237 -1981517 + L2 LINE L2 3200 3269 -3 3412 66 2 18 chr15 83714878 83715333 -1980421 + LTR7 LTR ERV1 1 448 -2 2985 135 74 0 chr15 83716170 83716682 -1979072 + MER34C LTR ERV1 36 585 0 209 326 67 44 chr15 83717636 83717771 -1977983 - MIR3 SINE MIR -56 152 15 4125 163 27 14 chr15 83719262 83719975 -1975779 + MER72 LTR ERV1 1 722 0 3815 183 20 11 chr15 83720382 83721097 -1974657 + MER72 LTR ERV1 2 722 0 246 231 0 0 chr15 83722793 83722858 -1972896 + GA-rich Low_complexity Low_complexity 2 66 0 931 124 0 15 chr15 83724137 83724274 -1971480 + AluJo SINE Alu 1 135 -177 1576 195 13 23 chr15 83724274 83724582 -1971172 + AluJo SINE Alu 1 305 -7 255 306 108 14 chr15 83725101 83725323 -1970431 - LTR16C LTR ERVL -12 479 237 3384 178 30 10 chr15 83725331 83725937 -1969817 + Tigger1 DNA MER2_type 1 618 -1800 258 294 24 0 chr15 83726865 83726950 -1968804 - L2 LINE L2 0 3313 3227 28 95 0 0 chr15 83727108 83727192 -1968562 + AT_rich Low_complexity Low_complexity 1 84 0 277 263 53 35 chr15 83727686 83727800 -1967954 - MIR3 SINE MIR -51 157 42 1551 158 50 36 chr15 83728415 83728693 -1967061 - AluJo SINE Alu -21 291 10 2171 170 48 18 chr15 83730039 83730434 -1965320 - MLT2D LTR ERVL -7 407 1 435 241 0 0 chr15 83731724 83731886 -1963868 + CT-rich Low_complexity Low_complexity 1 162 0 1704 175 21 126 chr15 83734354 83734886 -1960868 + MER31A LTR ERV1 1 476 -9 258 143 0 0 chr15 83734909 83734958 -1960796 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 303 219 0 chr15 83735660 83735838 -1959916 + L2 LINE L2 3006 3222 -91 2281 106 3 0 chr15 83735863 83736262 -1959492 - AluSx SINE Alu 0 400 1 386 121 15 0 chr15 83737109 83737175 -1958579 + GA-rich Low_complexity Low_complexity 3 69 0 458 236 51 76 chr15 83737709 83738037 -1957717 - MER34 LTR ERV1 0 750 365 375 253 70 13 chr15 83738024 83738182 -1957572 - LTR48B LTR ERV1 -354 290 124 * 227 247 13 26 chr15 83738164 83738241 -1957513 - MER34C LTR ERV1 -449 136 61 * 815 157 144 0 chr15 83739335 83739488 -1956266 + AluJb SINE Alu 133 307 -5 195 69 0 0 chr15 83740757 83740786 -1954968 + (GA)n Simple_repeat Simple_repeat 1 29 0 242 338 35 14 chr15 83740898 83741040 -1954714 - MIR SINE MIR -1 261 117 295 303 110 39 chr15 83742191 83742346 -1953408 - MIR SINE MIR -86 176 11 869 212 0 0 chr15 83742527 83742706 -1953048 - MER5A DNA MER1_type -4 185 7 229 235 0 0 chr15 83744643 83744702 -1951052 - MIR SINE MIR -65 143 94 1006 133 24 229 chr15 83745081 83745396 -1950358 + L1MA3 LINE L1 5948 6145 -160 2001 92 51 34 chr15 83745396 83745690 -1950064 + AluSp SINE Alu 15 313 0 1006 133 24 229 chr15 83745690 83745824 -1949930 + L1MA3 LINE L1 6145 6305 0 410 167 114 53 chr15 83745989 83746121 -1949633 + L1MDa LINE L1 2065 2204 -4336 1204 140 19 43 chr15 83746122 83746329 -1949425 + AluJo SINE Alu 88 289 -23 1327 241 54 35 chr15 83746329 83747106 -1948648 + L1MDa LINE L1 2196 2993 -3547 1307 243 45 43 chr15 83747096 83747515 -1948239 + L1MD2 LINE L1 5921 6340 -19 * 272 240 0 10 chr15 83749029 83749125 -1946629 + (TG)n Simple_repeat Simple_repeat 2 96 0 21 36 0 0 chr15 83749266 83749294 -1946460 + AT_rich Low_complexity Low_complexity 1 28 0 471 172 0 28 chr15 83749297 83749530 -1946224 + AluJo SINE Alu 1 286 -26 185 139 0 70 chr15 83749651 83749694 -1946060 - MIR SINE MIR -63 145 106 2260 121 0 0 chr15 83750128 83750433 -1945321 - AluSg SINE Alu -5 305 1 2140 107 4 0 chr15 83750827 83751142 -1944612 - AluSx SINE Alu 0 316 1 2581 192 28 102 chr15 83751938 83752684 -1943070 - LTR8 LTR ERV1 0 691 1 287 336 66 0 chr15 83752686 83752823 -1942931 + MIR SINE MIR 97 242 -20 2163 132 0 24 chr15 83753554 83753895 -1941859 - MER1B DNA MER1_type -4 333 1 189 255 102 20 chr15 83754116 83754214 -1941540 - MIR3 SINE MIR -22 186 81 2503 71 0 0 chr15 83754625 83754922 -1940832 - AluY SINE Alu -14 297 1 352 230 210 26 chr15 83755057 83755366 -1940388 + L1ME4a LINE L1 5753 6118 -3 226 160 200 0 chr15 83755396 83755446 -1940308 + FLAM_A SINE Alu 1 60 -72 2466 79 0 3 chr15 83755566 83755870 -1939884 + AluY SINE Alu 1 303 -8 512 76 0 0 chr15 83756242 83756308 -1939446 + LTR8A LTR ERV1 1 66 -661 3153 165 16 76 chr15 83756308 83757043 -1938711 - LTR8 LTR ERV1 0 691 1 34 0 0 0 chr15 83757414 83757448 -1938306 + AT_rich Low_complexity Low_complexity 1 34 0 2708 158 54 87 chr15 83757580 83758390 -1937364 - MER4D LTR ERV1 -8 895 1 3642 173 96 14 chr15 83758636 83759511 -1936243 - LTR28 LTR ERV1 0 1020 1 181 402 10 0 chr15 83759929 83760031 -1935723 + L2 LINE L2 1160 1262 -2052 200 267 0 0 chr15 83760240 83760285 -1935469 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 342 0 0 0 chr15 83760315 83760353 -1935401 + (CA)n Simple_repeat Simple_repeat 1 38 0 1222 188 42 127 chr15 83760480 83760889 -1934865 - MLT1A2 LTR MaLR 0 374 1 2027 165 32 0 chr15 83761660 83762035 -1933719 + L1MB3 LINE L1 5790 6176 -7 3925 195 39 31 chr15 83762481 83762870 -1932884 + L1MB7 LINE L1 4978 5362 -822 2485 72 0 0 chr15 83762870 83763174 -1932580 + AluY SINE Alu 1 304 -7 3925 195 39 31 chr15 83763174 83763968 -1931786 + L1MB7 LINE L1 5362 6175 -9 521 168 126 0 chr15 83764126 83764221 -1931533 + FRAM SINE Alu 38 144 -32 1140 201 28 42 chr15 83764752 83765040 -1930714 - AluJo SINE Alu -17 295 12 2116 191 30 7 chr15 83765324 83765754 -1930000 - MLT1C LTR MaLR 0 467 28 193 289 0 0 chr15 83766095 83766147 -1929607 + L2 LINE L2 3261 3312 -1 234 0 0 0 chr15 83766364 83766390 -1929364 + (CA)n Simple_repeat Simple_repeat 1 26 0 220 212 30 15 chr15 83767170 83767236 -1928518 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 901 180 0 173 chr15 83767601 83767825 -1927929 + MER8 DNA MER2_type 1 166 -73 1708 188 3 13 chr15 83767825 83768134 -1927620 + AluJo SINE Alu 6 311 -1 901 180 0 173 chr15 83768134 83768198 -1927556 + MER8 DNA MER2_type 166 239 0 2417 68 0 0 chr15 83769484 83769776 -1925978 - AluY SINE Alu -19 292 1 1995 160 20 18 chr15 83770395 83770738 -1925016 + MER2 DNA MER2_type 1 344 0 251 224 59 47 chr15 83771299 83771384 -1924370 - MER5B DNA MER1_type -40 138 53 321 324 122 15 chr15 83771410 83771811 -1923943 - L2 LINE L2 -982 2332 1889 895 296 106 17 chr15 83771864 83772337 -1923417 + L1MEd LINE L1 2 516 -5603 1635 275 138 41 chr15 83772462 83773622 -1922132 - L2 LINE L2 -3 3310 2030 438 136 152 32 chr15 83773622 83773743 -1922011 - LTR40b LTR ERVL 0 462 355 539 186 0 0 chr15 83773743 83773829 -1921925 - MER45 DNA AcHobo 0 1581 1496 317 75 19 0 chr15 83774990 83775043 -1920711 + (TA)n Simple_repeat Simple_repeat 2 55 0 180 111 0 0 chr15 83775138 83775165 -1920589 + (TATG)n Simple_repeat Simple_repeat 2 28 0 293 329 20 13 chr15 83775678 83775827 -1919927 - L2 LINE L2 -922 2392 2243 4860 37 4 9 chr15 83776025 83776586 -1919168 - LTR6B LTR ERV1 0 558 1 22 56 0 0 chr15 83776731 83776767 -1918987 + AT_rich Low_complexity Low_complexity 1 36 0 283 342 99 25 chr15 83777121 83777323 -1918431 - MIR SINE MIR -13 249 33 314 361 46 0 chr15 83778022 83778130 -1917624 + L2 LINE L2 3137 3249 -23 255 0 111 0 chr15 83781295 83781340 -1914414 + T-rich Low_complexity Low_complexity 1 50 0 250 245 0 0 chr15 83781675 83781724 -1914030 + L2 LINE L2 3265 3313 0 14513 126 44 16 chr15 83781729 83784059 -1911695 - Tigger1 DNA MER2_type 0 2418 23 203 267 67 40 chr15 83784952 83785027 -1910727 + MIR SINE MIR 93 169 -93 1568 203 60 8 chr15 83786010 83786380 -1909374 - MER74A LTR ERVL 0 558 170 989 185 28 4 chr15 83786445 83786652 -1909102 - MER74A LTR ERVL -360 262 2 211 203 102 0 chr15 83788014 83788073 -1907681 + L3b LINE CR1 1304 1368 -215 315 128 70 23 chr15 83790035 83790207 -1905547 + (TG)n Simple_repeat Simple_repeat 1 180 0 15954 28 23 1 chr15 83790333 83793020 -1902734 - L1PA3 LINE L1 -2 6153 3402 236 69 0 0 chr15 83793014 83793043 -1902711 + L1PA3 LINE L1 3394 3422 -2724 * 278 193 0 18 chr15 83795459 83795516 -1900238 - L1ME LINE L1 -535 5586 5531 462 294 73 104 chr15 83795946 83796398 -1899356 + L2 LINE L2 2832 3269 -44 186 43 0 0 chr15 83796548 83796571 -1899183 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2333 119 0 0 chr15 83796571 83796881 -1898873 - AluSg SINE Alu 0 310 1 1440 218 0 14 chr15 83796883 83797176 -1898578 - AluJo SINE Alu -18 294 6 310 309 78 79 chr15 83797236 83797905 -1897849 - L1M4 LINE L1 -1488 4658 3991 3169 119 32 19 chr15 83797917 83798448 -1897306 - LOR1-int LTR ERV1 -5643 2477 1940 * 4545 106 25 21 chr15 83798447 83799199 -1896555 - LOR1-int LTR ERV1 -6323 1797 1043 912 137 63 30 chr15 83799192 83799372 -1896382 - LOR1-int LTR ERV1 -6603 1213 701 * 1296 148 27 5 chr15 83799357 83799580 -1896174 - LOR1-int LTR ERV1 -7528 592 365 2564 138 22 118 chr15 83799605 83800155 -1895599 - LOR1a LTR ERV1 0 497 1 690 200 0 58 chr15 83800155 83800345 -1895409 - L1MA7 LINE L1 -79 6416 6238 4636 172 46 15 chr15 83800651 83800878 -1894876 - L1MA7 LINE L1 -265 6230 6012 456 19 0 0 chr15 83800878 83800931 -1894823 + (TG)n Simple_repeat Simple_repeat 2 54 0 4636 172 46 15 chr15 83800931 83802261 -1893493 - L1MA7 LINE L1 -483 6012 4604 180 0 0 0 chr15 83802261 83802281 -1893473 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 4636 172 46 15 chr15 83802281 83802400 -1893354 - L1MA7 LINE L1 -1891 4604 4490 225 0 0 0 chr15 83802400 83802425 -1893329 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1103 232 4 8 chr15 83802435 83802676 -1893078 - AluJo SINE Alu -22 290 51 3019 123 7 7 chr15 83802740 83803170 -1892584 - MER57B LTR ERV1 -3 431 2 477 80 0 0 chr15 83803172 83803247 -1892507 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1225 192 8 27 chr15 83803296 83803557 -1892197 - L1MA7 LINE L1 -1944 4406 4151 14887 180 22 13 chr15 83803568 83803836 -1891918 - L1MA2 LINE L1 0 7723 7459 2242 134 132 5 chr15 83803836 83804216 -1891538 + MSTA LTR MaLR 1 428 0 14887 180 22 13 chr15 83804216 83808418 -1887336 - L1MA2 LINE L1 -264 7459 3217 2912 254 39 63 chr15 83808413 83808592 -1887162 - L1MA7 LINE L1 -3965 2385 2203 * 2000 102 49 0 chr15 83808592 83808876 -1886878 - AluSx SINE Alu -14 298 1 2912 254 39 63 chr15 83808876 83810648 -1885106 - L1MA7 LINE L1 -4147 2203 804 2261 304 36 24 chr15 83810796 83811649 -1884105 - L1MA7 LINE L1 -5520 761 2 2479 134 32 55 chr15 83812797 83813231 -1882523 + MSTC LTR MaLR 1 424 -4 21 0 0 0 chr15 83813764 83813785 -1881969 + AT_rich Low_complexity Low_complexity 1 21 0 2082 156 89 60 chr15 83813933 83814370 -1881384 - LTR47A LTR ERVL -1 451 2 391 248 70 78 chr15 83814376 83814606 -1881148 + L1M4 LINE L1 1 228 -6314 296 308 41 31 chr15 83814902 83815074 -1880680 + L1M4 LINE L1 543 938 -5708 1341 186 3 69 chr15 83815204 83815494 -1880260 + AluJo SINE Alu 3 273 -39 872 245 99 25 chr15 83815534 83815897 -1879857 + L1M4 LINE L1 852 1241 -5301 428 195 15 41 chr15 83815907 83815972 -1879782 - L1M2 LINE L1 -708 5475 5410 3537 171 54 17 chr15 83815972 83816013 -1879741 + L1MB4 LINE L1 5429 5467 -713 207 0 0 0 chr15 83816013 83816036 -1879718 + (TA)n Simple_repeat Simple_repeat 2 24 0 3537 171 54 17 chr15 83816036 83816716 -1879038 + L1MB4 LINE L1 5467 6179 -1 428 195 15 41 chr15 83816716 83816805 -1878949 - L1M2 LINE L1 -773 5410 5328 262 102 102 20 chr15 83816888 83816937 -1878817 + MER5A DNA MER1_type 9 61 -128 2095 94 4 7 chr15 83816982 83817257 -1878497 - AluSg SINE Alu -8 302 29 687 219 22 114 chr15 83818023 83818251 -1877503 + MER3 DNA MER1_type 3 209 0 257 240 0 0 chr15 83818208 83818258 -1877496 - MER3 DNA MER1_type -119 90 41 * 519 319 52 42 chr15 83818966 83819273 -1876481 - MLT1H LTR MaLR -239 310 1 259 322 88 59 chr15 83820180 83820453 -1875301 - L2 LINE L2 -2 3311 3031 439 235 111 12 chr15 83820781 83820943 -1874811 + Tigger8 DNA MER2_type 211 388 -278 230 263 13 0 chr15 83821296 83821372 -1874382 + (TA)n Simple_repeat Simple_repeat 2 78 0 589 321 20 13 chr15 83821480 83821705 -1874049 + MIR SINE MIR 23 252 -10 2149 166 37 21 chr15 83822863 83823296 -1872458 - L1MA7 LINE L1 -34 6257 5818 592 81 0 47 chr15 83823313 83823399 -1872355 - AluSg/x SINE Alu -11 299 218 306 73 0 0 chr15 83823580 83823621 -1872133 + (TG)n Simple_repeat Simple_repeat 2 42 0 2223 84 7 10 chr15 83823722 83824042 -1871712 + AluY SINE Alu 1 311 0 1012 169 13 56 chr15 83825834 83825943 -1869811 + L1MA8 LINE L1 6071 6166 -125 2318 74 3 7 chr15 83825943 83826240 -1869514 + AluY SINE Alu 1 296 -15 1012 169 13 56 chr15 83826240 83826361 -1869393 + L1MA8 LINE L1 6166 6291 0 24 0 0 0 chr15 83826363 83826387 -1869367 + AT_rich Low_complexity Low_complexity 1 24 0 224 213 0 0 chr15 83826790 83826837 -1868917 + GA-rich Low_complexity Low_complexity 2 48 0 420 264 101 71 chr15 83827535 83827872 -1867882 + L3 LINE CR1 1165 1511 -66 617 294 161 26 chr15 83828040 83828547 -1867207 - L2 LINE L2 -5 3308 2728 206 297 54 0 chr15 83830572 83830646 -1865108 + L2 LINE L2 2973 3050 -222 1547 199 39 14 chr15 83831932 83832214 -1863540 + AluJo SINE Alu 1 289 -13 495 153 163 0 chr15 83832268 83832366 -1863388 - Tigger3(Golem) DNA MER2_type -2915 114 1 273 280 58 79 chr15 83832373 83832479 -1863275 - L1MEd LINE L1 -4785 1344 1237 2130 139 0 0 chr15 83832479 83832788 -1862966 - AluSx SINE Alu -3 309 1 273 280 58 79 chr15 83832788 83833035 -1862719 - L1MEd LINE L1 -4892 1237 1007 241 326 34 11 chr15 83833021 83833110 -1862644 - L1MEd LINE L1 -5482 637 547 * 21 0 0 0 chr15 83834335 83834356 -1861398 + AT_rich Low_complexity Low_complexity 1 21 0 4166 174 67 35 chr15 83835103 83835957 -1859797 - L1MB8 LINE L1 -2 6176 5278 1938 144 0 3 chr15 83835957 83836241 -1859513 - AluJo SINE Alu -19 293 11 4166 174 67 35 chr15 83836241 83836420 -1859334 - L1MB8 LINE L1 -900 5278 5106 201 119 24 24 chr15 83836624 83836666 -1859088 + T-rich Low_complexity Low_complexity 4 45 0 565 158 87 8 chr15 83838634 83838761 -1856993 - MER3 DNA MER1_type -8 201 65 1986 128 0 0 chr15 83839288 83839562 -1856192 - AluSx SINE Alu -38 274 1 1174 141 0 10 chr15 83839598 83839790 -1855964 + Tigger7 DNA MER2_type 2298 2487 0 2021 99 53 30 chr15 83839799 83840101 -1855653 - AluSg SINE Alu -1 309 1 25 0 0 0 chr15 83840110 83840135 -1855619 + AT_rich Low_complexity Low_complexity 1 25 0 422 152 40 40 chr15 83840150 83840249 -1855505 + L1MB7 LINE L1 6077 6175 -9 1242 233 113 33 chr15 83840758 83841298 -1854456 - L1M4 LINE L1 -3401 2745 2163 843 148 0 40 chr15 83841314 83841490 -1854264 - Charlie5 DNA MER1_type 0 2612 2444 2146 103 14 7 chr15 83841492 83841782 -1853972 - AluSx SINE Alu -14 298 7 231 61 0 0 chr15 83841800 83841833 -1853921 + (GA)n Simple_repeat Simple_repeat 2 34 0 276 284 27 0 chr15 83843134 83843208 -1852546 - MIR SINE MIR -71 191 116 2096 89 7 0 chr15 83843450 83843721 -1852033 - AluSc SINE Alu 0 309 37 448 176 0 0 chr15 83844222 83844296 -1851458 + MLT1I LTR MaLR 336 409 0 25 0 0 0 chr15 83844679 83844704 -1851050 + AT_rich Low_complexity Low_complexity 1 25 0 514 307 50 39 chr15 83845759 83846117 -1849637 + L1ME4a LINE L1 5518 5879 -242 2151 106 0 58 chr15 83846710 83847039 -1848715 + AluSg SINE Alu 1 310 0 1766 184 0 19 chr15 83848771 83849081 -1846673 - AluJb SINE Alu -8 304 1 379 237 13 92 chr15 83849540 83849692 -1846062 - MER69A DNA AcHobo -1 176 37 234 0 0 0 chr15 83850331 83850357 -1845397 + (CAT)n Simple_repeat Simple_repeat 1 26 0 420 323 46 32 chr15 83850401 83850618 -1845136 - MIR SINE MIR -30 232 13 1548 153 8 4 chr15 83851251 83851486 -1844268 - MER46A DNA MER2_type 0 236 1 23 54 0 0 chr15 83851595 83851632 -1844122 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr15 83855831 83855852 -1839902 + AT_rich Low_complexity Low_complexity 1 21 0 1761 180 22 19 chr15 83855958 83856281 -1839473 - MSTA LTR MaLR -2 426 103 943 88 7 61 chr15 83856276 83856424 -1839330 + MSTA LTR MaLR 12 151 -277 * 297 56 0 0 chr15 83856534 83856570 -1839184 - MSTA LTR MaLR -392 36 1 3096 135 9 0 chr15 83857616 83858076 -1837678 - L1PA15 LINE L1 -2 6163 5700 2280 88 0 23 chr15 83859856 83860164 -1835590 - AluSc SINE Alu -8 301 1 819 153 0 0 chr15 83860733 83860851 -1834903 + FLAM_C SINE Alu 1 118 -15 673 122 0 43 chr15 83860852 83861040 -1834714 + (TA)n Simple_repeat Simple_repeat 1 180 0 829 139 0 0 chr15 83861053 83861175 -1834579 + FRAM SINE Alu 31 152 -24 2349 84 0 0 chr15 83861619 83861917 -1833837 + AluY SINE Alu 8 305 -6 2391 81 3 3 chr15 83862755 83863053 -1832701 + AluSp SINE Alu 1 298 -15 830 248 25 46 chr15 83864158 83864440 -1831314 - MLT1E2 LTR MaLR 0 626 351 1839 118 16 3 chr15 83864440 83864761 -1830993 - L1M1 LINE L1 -681 5622 5298 703 288 58 18 chr15 83864762 83865070 -1830684 - MLT1E2 LTR MaLR -274 352 29 2731 119 72 15 chr15 83865070 83865531 -1830223 - LTR45B LTR ERV1 0 489 3 703 288 58 18 chr15 83865531 83865549 -1830205 - MLT1E2 LTR MaLR -597 29 13 180 200 0 0 chr15 83867347 83867392 -1828362 + (CA)n Simple_repeat Simple_repeat 2 46 0 258 81 0 0 chr15 83869839 83869876 -1825878 + (CA)n Simple_repeat Simple_repeat 2 38 0 336 302 35 53 chr15 83872964 83873133 -1822621 - HAL1b LINE L1 -457 891 726 1167 270 33 2 chr15 83873796 83874189 -1821565 - L1M4 LINE L1 -1909 4237 3833 6892 56 3 122 chr15 83874216 83875268 -1820486 - L1PA7 LINE L1 -4 6150 5136 362 330 56 39 chr15 83875507 83875740 -1820014 - HAL1 LINE L1 -698 1809 1573 232 293 20 0 chr15 83875746 83875845 -1819909 - HAL1b LINE L1 -866 482 382 472 332 164 15 chr15 83875906 83876180 -1819574 - HAL1 LINE L1 -1091 1416 1102 335 257 100 0 chr15 83876183 83876200 -1819554 - L1MA10 LINE L1 -1 6333 6317 2524 227 66 59 chr15 83876200 83876704 -1819050 - L1ME1 LINE L1 -9 6157 5658 241 94 0 0 chr15 83876704 83876736 -1819018 - U2 snRNA snRNA -155 33 2 2524 227 66 59 chr15 83876736 83877851 -1817903 - L1ME1 LINE L1 -508 5658 4504 868 142 120 49 chr15 83877865 83878048 -1817706 - MER20 DNA MER1_type 0 219 24 330 222 15 89 chr15 83878077 83878124 -1817630 - L1ME1 LINE L1 -1640 4506 4457 2266 97 7 3 chr15 83878124 83878424 -1817330 - AluSp SINE Alu -12 301 1 330 222 15 89 chr15 83878424 83878511 -1817243 - L1ME1 LINE L1 -1689 4457 4382 2434 94 0 0 chr15 83879023 83879332 -1816422 + AluSg SINE Alu 1 309 -1 2403 80 0 3 chr15 83881286 83881588 -1814166 + AluY SINE Alu 1 301 -10 338 205 40 40 chr15 83881871 83882022 -1813732 + L1MB7 LINE L1 4477 4627 -1519 267 146 51 0 chr15 83882040 83882106 -1813648 - MLT2C2 LTR ERVL -2 462 417 2322 188 33 7 chr15 83882359 83882812 -1812942 + MLT1C LTR MaLR 3 467 0 3141 160 29 21 chr15 83883630 83884261 -1811493 + LTR51 LTR ERV1 1 636 -35 1074 132 3 5 chr15 83884265 83884545 -1811209 + MER4B LTR ERV1 1 317 -293 * 1149 139 81 14 chr15 83884536 83884759 -1810995 + MER4E LTR ERV1 531 768 -11 305 322 86 78 chr15 83885105 83885465 -1810289 + L1M4b LINE L1 340 702 -6157 417 221 0 0 chr15 83885475 83885561 -1810193 + L1M4b LINE L1 969 1054 -5805 949 172 0 0 chr15 83885561 83885706 -1810048 + AluSq/x SINE Alu 1 145 -168 291 245 5 20 chr15 83885734 83885839 -1809915 + FLAM_A SINE Alu 7 56 -76 635 103 0 0 chr15 83885876 83885963 -1809791 + MER4B LTR ERV1 30 116 -494 1023 221 4 4 chr15 83885963 83886207 -1809547 + L1MB7 LINE L1 4706 4949 -1197 300 220 0 0 chr15 83886209 83886268 -1809486 - L1 LINE L1 -843 5303 5245 2927 188 21 3 chr15 83886271 83886876 -1808878 - L1 LINE L1 -876 5270 4655 * 3085 228 30 40 chr15 83886871 83887507 -1808247 + L1MB7 LINE L1 4958 5568 -616 2421 68 0 7 chr15 83887507 83887803 -1807951 - AluY SINE Alu -15 296 3 3085 228 30 40 chr15 83887803 83888414 -1807340 + L1MB7 LINE L1 5568 6184 0 416 302 24 0 chr15 83888405 83888574 -1807180 + L1M4b LINE L1 2364 2536 -4602 * 998 171 37 5 chr15 83888573 83888789 -1806965 + L1MA6 LINE L1 5895 6117 -183 596 193 20 13 chr15 83888897 83889047 -1806707 + L1MA8 LINE L1 6139 6289 -2 25 0 0 0 chr15 83889081 83889106 -1806648 + AT_rich Low_complexity Low_complexity 1 25 0 211 217 0 0 chr15 83889691 83889737 -1806017 + (CTA)n Simple_repeat Simple_repeat 1 46 0 314 314 93 0 chr15 83889750 83889868 -1805886 - MIR SINE MIR -17 245 117 1036 168 16 0 chr15 83890323 83890514 -1805240 + MLT1A1 LTR MaLR 1 194 -171 367 258 110 19 chr15 83890558 83890713 -1805041 - MLT1H LTR MaLR -318 231 63 296 156 0 0 chr15 83891233 83891278 -1804476 - MLT1A1 LTR MaLR 0 365 321 24 0 0 0 chr15 83892475 83892499 -1803255 + AT_rich Low_complexity Low_complexity 1 24 0 251 156 0 22 chr15 83893085 83893130 -1802624 + L2 LINE L2 3220 3263 -9 2071 107 0 0 chr15 83893595 83893865 -1801889 + AluSc SINE Alu 1 270 -39 3853 163 44 13 chr15 83893908 83894657 -1801097 + LTR39 LTR ERV1 12 783 0 2330 88 7 0 chr15 83896160 83896455 -1799299 - AluSg SINE Alu -12 298 2 780 174 71 10 chr15 83896466 83896662 -1799092 - L1MD2 LINE L1 -1 6358 6151 228 111 0 0 chr15 83896664 83896700 -1799054 + (TG)n Simple_repeat Simple_repeat 2 37 0 26875 126 9 79 chr15 83896840 83902331 -1793423 - L1P LINE L1 -1026 5120 12 3310 240 71 32 chr15 83902367 83903481 -1792273 - L1M4 LINE L1 -2681 3701 2537 2167 125 0 0 chr15 83903481 83903769 -1791985 - AluSx SINE Alu -13 299 12 3310 240 71 32 chr15 83903769 83903979 -1791775 - L1M4 LINE L1 -3845 2537 2337 1479 185 0 38 chr15 83904011 83904298 -1791456 - AluJo SINE Alu -5 307 32 329 322 68 49 chr15 83904299 83904504 -1791250 - HAL1 LINE L1 -1480 1027 819 993 228 14 9 chr15 83905436 83905655 -1790099 + MER58A DNA MER1_type 2 221 -3 3724 233 31 8 chr15 83906423 83907593 -1788161 + L1MB8 LINE L1 3180 4375 -1771 3475 174 42 19 chr15 83907595 83908345 -1787409 + L1MB8 LINE L1 4892 5763 -415 2456 66 0 0 chr15 83908345 83908647 -1787107 + AluY SINE Alu 1 302 -9 3475 174 42 19 chr15 83908647 83909072 -1786682 + L1MB8 LINE L1 5763 6177 -1 642 286 127 9 chr15 83909097 83909419 -1786335 - MLT1J LTR MaLR -49 462 103 1907 118 66 3 chr15 83909419 83909708 -1786046 - AluSg SINE Alu -3 307 1 27 62 0 0 chr15 83909899 83909947 -1785807 + AT_rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr15 83910598 83910640 -1785114 + AT_rich Low_complexity Low_complexity 1 42 0 338 263 103 0 chr15 83910831 83910928 -1784826 + MIR SINE MIR 42 147 -77 206 362 78 52 chr15 83911732 83912003 -1783751 - L2 LINE L2 -2 3270 2993 26 0 0 0 chr15 83912450 83912476 -1783278 + AT_rich Low_complexity Low_complexity 1 26 0 1960 118 36 4 chr15 83912860 83913140 -1782614 - AluSx SINE Alu -23 289 1 326 200 38 0 chr15 83914056 83914149 -1781605 - LTR16A1 LTR ERVL 0 457 377 2294 114 16 147 chr15 83914450 83915000 -1780754 + LTR12 LTR ERV1 1 478 -236 605 235 39 11 chr15 83915001 83915180 -1780574 - MLT1A1 LTR MaLR -176 189 6 1975 165 63 24 chr15 83915867 83915908 -1779846 - MSTA LTR MaLR 0 428 390 2072 59 4 15 chr15 83915908 83916178 -1779576 + AluY SINE Alu 39 305 -6 1975 165 63 24 chr15 83916178 83916548 -1779206 - MSTA LTR MaLR -38 390 1 208 293 26 78 chr15 83917259 83917272 -1778482 - MIR SINE MIR -32 230 218 2750 26 0 0 chr15 83917272 83917581 -1778173 - AluY SINE Alu -2 309 1 208 293 26 78 chr15 83917581 83917683 -1778071 - MIR SINE MIR -44 218 121 204 289 0 40 chr15 83917808 83917884 -1777870 - L2 LINE L2 -164 3108 3036 711 273 133 7 chr15 83918090 83918361 -1777393 - LTR40a LTR ERVL -148 371 67 1044 286 87 21 chr15 83919994 83920511 -1775243 + L1MCb LINE L1 5 555 -5490 926 190 37 9 chr15 83920621 83920837 -1774917 + L1MCb LINE L1 570 791 -5254 2277 241 115 38 chr15 83921073 83922627 -1773127 + L1MCb LINE L1 786 2637 -4108 315 213 0 0 chr15 83922630 83922710 -1773044 + (TA)n Simple_repeat Simple_repeat 1 80 0 324 300 0 0 chr15 83922711 83922801 -1772953 - L1MC4 LINE L1 -1339 6703 6614 1207 261 46 14 chr15 83922813 83923295 -1772459 + L1MCb LINE L1 2618 3114 -3450 814 244 116 7 chr15 83923296 83923571 -1772183 - L1M4 LINE L1 -1195 5449 5145 2193 256 57 19 chr15 83923584 83923647 -1772107 - L1M4 LINE L1 -1892 4752 4693 1960 131 14 7 chr15 83923647 83923938 -1771816 + AluSx SINE Alu 1 293 -19 2193 256 57 19 chr15 83923938 83924786 -1770968 - L1M4 LINE L1 -1951 4693 3806 838 261 36 63 chr15 83924787 83925281 -1770473 - L1M4 LINE L1 -5146 1396 916 906 189 71 0 chr15 83925341 83925510 -1770244 - AluSg/x SINE Alu -13 299 119 2234 131 123 5 chr15 83926498 83926881 -1768873 - MSTA LTR MaLR 0 428 1 1152 77 21 0 chr15 83927543 83927686 -1768068 + AluYb8 SINE Alu 5 150 -168 855 167 0 0 chr15 83928139 83928271 -1767483 + FLAM_C SINE Alu 2 133 0 320 212 59 12 chr15 83929445 83929530 -1766224 + MIR SINE MIR 84 172 -90 1475 185 28 11 chr15 83929824 83930187 -1765567 + Looper DNA T2_type 2 370 -1188 1021 193 106 0 chr15 83930190 83930408 -1765346 + MLT1E2 LTR MaLR 1 241 -385 19618 165 28 6 chr15 83930996 83938160 -1757594 + L1MA2 LINE L1 12 7332 -391 211 281 12 61 chr15 83938174 83938256 -1757498 + MIR SINE MIR 88 165 -97 22 56 0 0 chr15 83938281 83938317 -1757437 + AT_rich Low_complexity Low_complexity 1 36 0 3344 204 119 15 chr15 83939614 83940638 -1755116 - L1MC4a LINE L1 -1 7807 6677 414 267 37 47 chr15 83940639 83940830 -1754924 - L2 LINE L2 -26 3287 3099 236 346 13 0 chr15 83940914 83940992 -1754762 - L2 LINE L2 -239 3074 2996 917 194 26 38 chr15 83940994 83941307 -1754447 - MLT1A2 LTR MaLR 0 374 1 1030 291 143 27 chr15 83941328 83941881 -1753873 - L2 LINE L2 -337 2977 2361 204 250 29 44 chr15 83941939 83942007 -1753747 + MIR SINE MIR 195 261 -1 2150 120 3 7 chr15 83942609 83942908 -1752846 + AluSx SINE Alu 1 298 -14 1499 269 120 43 chr15 83943093 83943328 -1752426 - HAL1 LINE L1 -16 2491 2276 450 0 0 0 chr15 83943328 83943378 -1752376 + (CA)n Simple_repeat Simple_repeat 1 50 0 1499 269 120 43 chr15 83943378 83943963 -1751791 - HAL1 LINE L1 -231 2276 1738 2220 25 79 7 chr15 83943963 83944240 -1751514 + AluY SINE Alu 1 297 -14 1499 269 120 43 chr15 83944240 83944754 -1751000 - HAL1 LINE L1 -769 1738 1053 2129 110 28 0 chr15 83944757 83945047 -1750707 - AluSx SINE Alu -14 298 1 3502 152 57 42 chr15 83945050 83945827 -1749927 - L1MC1 LINE L1 -12 6321 5534 1207 282 71 63 chr15 83945857 83946493 -1749261 - HAL1 LINE L1 -1478 1029 399 504 0 0 0 chr15 83946493 83946549 -1749205 + (TC)n Simple_repeat Simple_repeat 2 57 0 180 0 0 0 chr15 83946554 83946574 -1749180 + (TG)n Simple_repeat Simple_repeat 1 20 0 1207 282 71 63 chr15 83946574 83946846 -1748908 - HAL1 LINE L1 -2111 396 108 7215 188 113 51 chr15 83947180 83947514 -1748240 - L1MC3 LINE L1 -222 7563 7251 262 212 35 12 chr15 83947514 83947599 -1748155 - MLT1F1 LTR MaLR -436 131 45 7215 188 113 51 chr15 83947599 83948056 -1747698 - L1MC3 LINE L1 -534 7251 6824 210 37 0 0 chr15 83948056 83948083 -1747671 + (CA)n Simple_repeat Simple_repeat 2 28 0 7215 188 113 51 chr15 83948083 83949320 -1746434 - L1MC3 LINE L1 -961 6824 5317 320 203 7 105 chr15 83949330 83949473 -1746281 - L1MC4 LINE L1 0 8042 7914 246 239 45 23 chr15 83949558 83949646 -1746108 - L1MC4 LINE L1 -152 7890 7801 843 254 84 4 chr15 83949749 83950024 -1745730 - L1MC4 LINE L1 -411 7631 7335 * 1678 210 75 10 chr15 83950013 83950508 -1745246 - L1MDa LINE L1 -4441 2099 1573 * 4019 221 42 36 chr15 83950503 83951783 -1743971 - L1MC3 LINE L1 -1168 4978 3691 804 249 47 16 chr15 83951789 83952046 -1743708 + MLT1C LTR MaLR 61 325 -142 336 288 80 16 chr15 83952375 83952500 -1743254 + L2 LINE L2 3178 3310 -3 842 169 14 0 chr15 83954461 83954593 -1741161 + BC200 scRNA scRNA 1 137 -63 2396 106 3 0 chr15 83954593 83954905 -1740849 + AluSp SINE Alu 1 313 0 2807 168 82 5 chr15 83958042 83958639 -1737115 - MER73 LTR ERVL -1 643 1 506 200 23 31 chr15 83959177 83959307 -1736447 + MER4D LTR ERV1 775 903 0 195 276 200 55 chr15 83959418 83959563 -1736191 + MIR3 SINE MIR 15 180 -28 890 112 7 13 chr15 83959679 83959831 -1735923 + L1MA10 LINE L1 6180 6330 -4 2389 132 38 2 chr15 83959978 83960395 -1735359 + LTR23 LTR ERV1 1 432 -5 1440 122 90 8 chr15 83960943 83961188 -1734566 - LTR23 LTR ERV1 -12 425 161 761 151 86 0 chr15 83961259 83961398 -1734356 - LTR23 LTR ERV1 -286 151 1 343 109 315 33 chr15 83961410 83961502 -1734252 + LTR48B LTR ERV1 1 118 -669 * 1129 113 20 56 chr15 83961499 83961552 -1734202 + LTR23 LTR ERV1 250 303 -134 2198 117 0 0 chr15 83961552 83961852 -1733902 + AluSc SINE Alu 1 300 -9 1129 113 20 56 chr15 83961852 83961993 -1733761 + LTR23 LTR ERV1 303 437 0 1337 255 97 28 chr15 83962041 83962551 -1733203 + LTR48B LTR ERV1 117 644 0 3586 182 22 34 chr15 83962827 83963541 -1732213 - MER50 LTR ERV1 -28 706 1 2651 174 86 24 chr15 83963578 83964146 -1731608 - LTR51 LTR ERV1 0 671 65 925 103 35 6 chr15 83964146 83964320 -1731434 + CT-rich Low_complexity Low_complexity 2 180 0 2651 174 86 24 chr15 83964320 83964333 -1731421 - LTR51 LTR ERV1 -606 65 54 4263 115 14 36 chr15 83964361 83965029 -1730725 - L1PA13 LINE L1 -23 6140 5488 927 126 0 0 chr15 83965016 83965159 -1730595 - L1PA13 LINE L1 -1792 4354 4212 * 4162 152 43 14 chr15 83965154 83966063 -1729691 - L1P4 LINE L1 -663 5498 4572 4487 224 30 49 chr15 83966165 83966996 -1728758 - L1MC/D LINE L1 -603 5639 4860 1523 164 0 85 chr15 83966996 83967313 -1728441 + AluJo SINE Alu 1 290 -22 4487 224 30 49 chr15 83967313 83968199 -1727555 - L1MC/D LINE L1 -1382 4860 3959 293 224 33 86 chr15 83968205 83968357 -1727397 + L1ME3A LINE L1 6015 6158 -12 363 304 101 22 chr15 83968411 83968727 -1727027 + HAL1 LINE L1 1431 1771 -736 1379 64 23 0 chr15 83969791 83969962 -1725792 + AluY SINE Alu 124 298 -13 1753 206 47 113 chr15 83970733 83971290 -1724464 + MER77 LTR ERV1 1 520 -85 10582 178 24 6 chr15 83971290 83972435 -1723319 + L1MA7 LINE L1 3232 4355 -1936 225 0 0 0 chr15 83972435 83972460 -1723294 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 10582 178 24 6 chr15 83972460 83974310 -1721444 + L1MA7 LINE L1 4355 6281 -10 621 321 46 29 chr15 83974319 83974842 -1720912 + HAL1b LINE L1 70 601 -747 299 259 60 0 chr15 83975249 83975365 -1720389 + Charlie8 DNA MER1_type 142 264 -2153 217 106 21 21 chr15 83975845 83975892 -1719862 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 3300 239 80 26 chr15 83976314 83977571 -1718183 + L1MDb LINE L1 358 1567 -4839 2574 229 15 28 chr15 83977568 83977739 -1718015 - L1M4 LINE L1 -814 5750 5578 * 4011 176 16 53 chr15 83977739 83978422 -1717332 - L1PA13 LINE L1 -1 6162 5505 2574 229 15 28 chr15 83978422 83978919 -1716835 - L1M4 LINE L1 -986 5578 5091 * 3753 252 67 17 chr15 83978915 83980316 -1715438 - L1MCa LINE L1 -2659 3905 2474 399 145 0 79 chr15 83980336 83980721 -1715033 + (TA)n Simple_repeat Simple_repeat 1 354 0 2329 224 167 17 chr15 83980724 83981855 -1713899 - L1MCa LINE L1 -4263 2482 1076 2110 177 47 42 chr15 83981857 83982083 -1713671 - MSTB1 LTR MaLR 0 432 209 4480 109 23 68 chr15 83982083 83982332 -1713422 - L1MA3 LINE L1 0 6305 6046 2117 104 24 3 chr15 83982332 83982621 -1713133 - AluSc SINE Alu -14 295 1 4480 109 23 68 chr15 83982621 83982968 -1712786 - L1MA3 LINE L1 -259 6046 5747 2344 99 0 3 chr15 83982968 83983270 -1712484 - AluSx SINE Alu -11 301 1 4480 109 23 68 chr15 83983270 83983423 -1712331 - L1MA3 LINE L1 -558 5747 5589 2110 177 47 42 chr15 83983423 83983626 -1712128 - MSTB1 LTR MaLR -223 209 1 1512 257 88 94 chr15 83983627 83983770 -1711984 - L1MCa LINE L1 -4969 1076 934 2042 118 13 10 chr15 83983770 83984074 -1711680 - AluSc SINE Alu -4 305 1 1512 257 88 94 chr15 83984074 83984938 -1710816 - L1MCa LINE L1 -5111 934 75 208 296 56 64 chr15 83984963 83985088 -1710666 + L2 LINE L2 2031 2154 -1160 386 22 0 0 chr15 83985307 83985352 -1710402 - tRNA-Arg-CGC tRNA tRNA -31 45 1 614 82 0 0 chr15 83985653 83985726 -1710028 - AluSg/x SINE Alu -23 287 215 2456 78 0 3 chr15 83986026 83986335 -1709419 - AluY SINE Alu -3 308 1 249 204 0 0 chr15 83986397 83986446 -1709308 + L2 LINE L2 3265 3313 0 2442 78 0 19 chr15 83987250 83987559 -1708195 - AluY SINE Alu -8 303 1 2170 100 0 13 chr15 83988023 83988322 -1707432 - AluSx SINE Alu -17 295 1 192 77 0 0 chr15 83988337 83988363 -1707391 + (A)n Simple_repeat Simple_repeat 1 26 0 583 243 46 7 chr15 83988364 83988516 -1707238 + MIR SINE MIR 104 261 -1 2297 103 3 6 chr15 83989237 83989548 -1706206 + AluSg SINE Alu 1 310 0 198 0 0 0 chr15 83990193 83990215 -1705539 + (T)n Simple_repeat Simple_repeat 1 22 0 435 262 97 7 chr15 83990526 83990671 -1705083 - MER5B DNA MER1_type -14 164 7 281 109 18 0 chr15 83991850 83991905 -1703849 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2233 108 3 3 chr15 83991917 83992222 -1703532 - AluSg SINE Alu -5 305 1 780 218 97 24 chr15 83992676 83992841 -1702913 - AluJo SINE Alu -32 280 104 15435 195 25 13 chr15 83992966 83992993 -1702761 - L1PA13 LINE L1 -1769 5028 5003 2028 154 0 0 chr15 83992993 83993304 -1702450 - AluSx SINE Alu -1 311 1 15435 195 25 13 chr15 83993304 83993885 -1701869 - L1PA13 LINE L1 -1794 5003 4430 2360 82 0 0 chr15 83993885 83994179 -1701575 - AluY SINE Alu -17 294 1 15435 195 25 13 chr15 83994179 83996604 -1699150 - L1PA13 LINE L1 -2367 4430 1913 2224 106 0 0 chr15 83996604 83996887 -1698867 - AluSx SINE Alu -29 283 1 15435 195 25 13 chr15 83996887 83998633 -1697121 - L1PA13 LINE L1 -4884 1913 189 1559 144 158 7 chr15 83998633 83998931 -1696823 - MSTA LTR MaLR -85 343 1 1850 182 9 6 chr15 83999227 83999562 -1696192 + L1MC1 LINE L1 5991 6326 -7 211 259 19 0 chr15 83999861 83999915 -1695839 - MIR3 SINE MIR -21 187 133 276 71 0 0 chr15 84000021 84000063 -1695691 - LTR23 LTR ERV1 -5 432 391 1325 188 4 9 chr15 84000063 84000292 -1695462 + AluJo SINE Alu 1 228 -84 1085 143 36 15 chr15 84000293 84000489 -1695265 - LTR56 LTR ERV1 -245 200 1 1587 208 0 16 chr15 84000830 84001138 -1694616 - AluJo SINE Alu -9 303 1 2520 163 71 2 chr15 84001340 84001775 -1693979 - LTR24 LTR ERV1 -2 465 1 1873 213 85 30 chr15 84002268 84002705 -1693049 - LOR1b LTR ERV1 0 461 1 684 303 40 23 chr15 84003737 84004084 -1691670 - MLT1J LTR MaLR -145 366 14 2681 148 7 2 chr15 84004215 84004654 -1691100 + MER41B LTR ERV1 157 597 -38 4116 133 98 3 chr15 84005199 84005855 -1689899 - LTR62 LTR ERVK -1 718 1 394 291 102 5 chr15 84006073 84006269 -1689485 + L2 LINE L2 1769 1983 -1331 232 303 141 28 chr15 84006272 84006523 -1689231 + L2 LINE L2 2964 3247 -25 249 370 7 14 chr15 84006920 84007066 -1688688 - MARNA DNA Mariner -355 231 87 653 152 0 0 chr15 84009023 84009115 -1686639 - AluJ/FLAM SINE Alu -219 93 2 240 283 168 9 chr15 84009658 84009771 -1685983 - LTR33 LTR ERVL 0 521 391 260 257 79 10 chr15 84009859 84009960 -1685794 - LTR33 LTR ERVL -253 268 161 27 73 0 0 chr15 84010743 84010798 -1684956 + AT_rich Low_complexity Low_complexity 1 55 0 1162 306 78 35 chr15 84010813 84011392 -1684362 - HERVL LTR ERVL -2784 2870 2267 328 339 69 16 chr15 84011665 84011854 -1683900 - HERVL LTR ERVL -3068 1928 1730 265 188 16 16 chr15 84012185 84012249 -1683505 + L1MC2 LINE L1 1127 1190 -5233 259 163 0 0 chr15 84012301 84012344 -1683410 + L1M4 LINE L1 3906 3948 -2198 1046 17 0 0 chr15 84012383 84012500 -1683254 - AluY SINE Alu -17 294 178 524 252 63 43 chr15 84012504 84013064 -1682690 + L1MC2 LINE L1 1283 2190 -4751 * 927 226 84 70 chr15 84013060 84013546 -1682208 + L1MC2 LINE L1 3252 3744 -3197 424 277 0 0 chr15 84013549 84013643 -1682111 + L1MC2 LINE L1 4524 4617 -2324 5507 185 53 50 chr15 84013647 84015994 -1679760 + L1MC2 LINE L1 4678 7017 -122 2129 97 7 0 chr15 84015994 84016272 -1679482 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr15 84016274 84016302 -1679452 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5507 185 53 50 chr15 84016302 84016429 -1679325 + L1MC2 LINE L1 7017 7139 0 1255 249 50 38 chr15 84016427 84017010 -1678744 + L1M4 LINE L1 2933 3522 -2624 * 344 250 56 62 chr15 84017003 84017147 -1678607 + L1ME1 LINE L1 5851 5993 -173 * 216 250 0 0 chr15 84017275 84017323 -1678431 + MIR SINE MIR 86 133 -129 1362 133 73 4 chr15 84018334 84018582 -1677172 - L1MA5 LINE L1 0 6300 6036 339 25 0 0 chr15 84018601 84018641 -1677113 + (TA)n Simple_repeat Simple_repeat 2 41 0 289 348 37 15 chr15 84018916 84019051 -1676703 - MIR SINE MIR -90 172 35 735 256 26 30 chr15 84019328 84019513 -1676241 + MIR SINE MIR 11 196 -66 2020 96 52 4 chr15 84019513 84019783 -1675971 - AluSc SINE Alu -26 283 1 735 256 26 30 chr15 84019783 84019831 -1675923 + MIR SINE MIR 196 243 -19 398 320 31 8 chr15 84023017 84023145 -1672609 + MIR3 SINE MIR 51 181 -27 241 278 160 11 chr15 84023666 84023799 -1671955 + MIR SINE MIR 36 188 -68 216 300 92 8 chr15 84023882 84024002 -1671752 + MIR SINE MIR 53 182 -80 275 236 164 55 chr15 84025955 84026065 -1669689 + L2 LINE L2 3192 3313 0 3133 248 49 42 chr15 84026376 84027575 -1668179 + L1MC4 LINE L1 2724 3931 -2215 2390 227 73 61 chr15 84027681 84028489 -1667265 + L1MC4 LINE L1 4362 4696 -1450 2341 100 3 3 chr15 84028489 84028799 -1666955 + AluY SINE Alu 1 310 -1 2390 227 73 61 chr15 84028799 84029506 -1666248 + L1MC4 LINE L1 4696 5393 -753 359 262 37 47 chr15 84029526 84029633 -1666121 - MER5A DNA MER1_type -68 121 16 487 273 51 23 chr15 84029980 84030156 -1665598 + MIR SINE MIR 82 262 0 729 178 0 0 chr15 84030696 84030803 -1664951 - AluJb SINE Alu -69 243 137 1167 186 0 0 chr15 84030883 84031076 -1664678 - MER3 DNA MER1_type -6 203 11 2098 165 143 16 chr15 84033723 84034171 -1661583 + MLT1D LTR MaLR 1 505 0 218 240 0 60 chr15 84034390 84034440 -1661314 + MIR SINE MIR 27 73 -135 491 174 24 30 chr15 84034862 84035029 -1660725 + GA-rich Low_complexity Low_complexity 4 169 0 728 98 0 72 chr15 84035031 84035224 -1660530 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 521 179 14 14 chr15 84035225 84035365 -1660389 + GA-rich Low_complexity Low_complexity 2 141 0 1811 168 153 32 chr15 84036793 84037204 -1658550 + LOR1b LTR ERV1 1 461 0 2665 104 0 57 chr15 84039370 84039753 -1656001 + THE1B LTR MaLR 4 364 0 1505 136 13 88 chr15 84039785 84040102 -1655652 + L1MA10 LINE L1 6040 6332 -2 276 100 0 0 chr15 84040437 84040477 -1655277 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr15 84040554 84040582 -1655172 + AT_rich Low_complexity Low_complexity 1 28 0 3038 261 52 37 chr15 84041564 84042363 -1653391 - L2 LINE L2 0 3313 2496 1531 168 53 43 chr15 84042363 84042666 -1653088 - AluJo SINE Alu -6 306 1 3038 261 52 37 chr15 84042666 84043161 -1652593 - L2 LINE L2 -817 2496 2010 232 248 37 55 chr15 84043286 84043395 -1652359 - MIR SINE MIR -54 208 102 2612 50 0 0 chr15 84043395 84043698 -1652056 + AluY SINE Alu 1 303 -8 534 222 85 85 chr15 84044099 84044347 -1651407 + MIR SINE MIR 2 249 -13 615 239 56 0 chr15 84045568 84045748 -1650006 + HAL1 LINE L1 44 233 -2274 3259 239 109 68 chr15 84045812 84046683 -1649071 + HAL1 LINE L1 644 1478 -1029 2201 119 0 6 chr15 84046683 84046994 -1648760 + AluSc SINE Alu 1 309 0 3259 239 109 68 chr15 84046994 84047708 -1648046 + HAL1 LINE L1 1478 2313 -194 1990 150 0 0 chr15 84047708 84048008 -1647746 + AluSp SINE Alu 1 300 -13 3259 239 109 68 chr15 84048008 84048212 -1647542 + HAL1 LINE L1 2313 2507 0 812 274 4 35 chr15 84048571 84048830 -1646924 + L1MB8 LINE L1 5925 6175 -3 2701 42 0 0 chr15 84049462 84049773 -1645981 - AluY SINE Alu 0 311 1 298 333 0 0 chr15 84050180 84050339 -1645415 + (CATCC)n Simple_repeat Simple_repeat 3 161 0 197 320 156 29 chr15 84050485 84050729 -1645025 + L2 LINE L2 1638 1912 -1402 270 364 128 17 chr15 84050955 84051315 -1644439 + L2 LINE L2 2290 2689 -625 219 319 52 44 chr15 84051643 84051778 -1643976 + L2 LINE L2 2948 3083 -189 2592 65 0 0 chr15 84051887 84052197 -1643557 - AluY SINE Alu -1 310 1 3839 168 18 3 chr15 84103411 84104514 -1591240 + L1PBa LINE L1 2172 3349 -3513 1677 201 65 56 chr15 84105787 84106235 -1589519 + MLT1D LTR MaLR 54 505 0 286 211 0 13 chr15 84106975 84107051 -1588703 - L1ME4a LINE L1 0 6121 6047 1585 243 81 26 chr15 84107297 84107754 -1588000 - MLT1J LTR MaLR -25 486 5 1146 190 164 0 chr15 84108405 84108917 -1586837 + L1MC4 LINE L1 7414 8037 -5 5417 48 1 0 chr15 84109823 84110506 -1585248 - L1P LINE L1 -893 5253 4570 4422 41 5 2 chr15 84110505 84111060 -1584694 + L1P LINE L1 3242 3798 -2348 * 266 322 33 0 chr15 84111165 84111255 -1584499 + MLT1L LTR MaLR 299 391 -224 2988 135 9 2 chr15 84112205 84112636 -1583118 - MER57B LTR ERV1 0 434 1 1541 108 129 0 chr15 84112637 84112869 -1582885 - MER57B-int LTR ERV1 -2 7535 7274 748 144 24 8 chr15 84112869 84112994 -1582760 - LTR54B LTR ERV1 -369 129 3 2946 94 3 0 chr15 84113441 84113804 -1581950 + THE1B LTR MaLR 1 364 0 670 257 19 27 chr15 84114000 84114257 -1581497 - L1M4 LINE L1 -3016 3130 2876 553 217 63 57 chr15 84114438 84114613 -1581141 - MER5B DNA MER1_type 0 178 3 566 263 27 21 chr15 84116313 84116499 -1579255 + MLT1A1 LTR MaLR 179 365 0 324 260 48 10 chr15 84116499 84116603 -1579151 + MIR SINE MIR 155 262 0 4605 236 35 22 chr15 84117772 84118268 -1577486 + L1MB3 LINE L1 3056 3544 -2602 2229 91 10 0 chr15 84118268 84118564 -1577190 - AluY SINE Alu -12 299 1 4605 236 35 22 chr15 84118564 84119459 -1576295 + L1MB3 LINE L1 3544 4464 -1682 508 143 0 0 chr15 84119618 84119688 -1576066 - AluSq/x SINE Alu -197 116 47 587 128 0 11 chr15 84120021 84120115 -1575639 - LTR12 LTR ERV1 -4 710 618 368 159 0 0 chr15 84120125 84120194 -1575560 - LTR30 LTR ERV1 -102 620 552 758 152 15 28 chr15 84120310 84120466 -1575288 - LTR12 LTR ERV1 -480 1683 94 247 250 0 0 chr15 84120470 84120522 -1575232 - LTR30 LTR ERV1 -670 52 1 388 295 83 26 chr15 84120738 84120931 -1574823 + L2 LINE L2 1849 2052 -1262 433 330 77 0 chr15 84121584 84121766 -1573988 + MIR SINE MIR 2 197 -65 392 124 21 103 chr15 84121771 84121868 -1573886 - LOR1a LTR ERV1 0 497 409 234 0 0 0 chr15 84121868 84121894 -1573860 + (T)n Simple_repeat Simple_repeat 1 26 0 1366 216 77 61 chr15 84123302 84123746 -1572008 - MLT1C LTR MaLR -5 462 12 1247 237 158 54 chr15 84124354 84124912 -1570842 + MLT1E3 LTR MaLR 9 624 0 2071 178 31 3 chr15 84125449 84125804 -1569950 - MLT1A1 LTR MaLR 0 365 1 4820 180 24 30 chr15 84126277 84127165 -1568589 + L1MB3 LINE L1 4442 5333 -850 2528 66 0 3 chr15 84127165 84127467 -1568287 + AluY SINE Alu 1 301 -10 4820 180 24 30 chr15 84127467 84128313 -1567441 + L1MB3 LINE L1 5333 6183 0 1050 241 63 62 chr15 84131178 84131419 -1564335 + L1MEc LINE L1 2087 2326 -3889 2745 197 12 59 chr15 84131419 84132084 -1563670 - LTR27 LTR ERV1 0 636 3 1050 241 63 62 chr15 84132084 84132591 -1563163 + L1MEc LINE L1 2326 2885 -3330 5842 130 15 29 chr15 84132693 84133091 -1562663 - L1PB1 LINE L1 -1 6150 5748 369 109 0 0 chr15 84133091 84133146 -1562608 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 5842 130 15 29 chr15 84133146 84133980 -1561774 - L1PB1 LINE L1 -403 5748 4934 3852 217 24 18 chr15 84133995 84134985 -1560769 - L1M4 LINE L1 -743 5403 4435 1821 153 7 17 chr15 84134985 84135286 -1560468 - AluJo SINE Alu -14 298 1 3852 217 24 18 chr15 84135286 84135356 -1560398 - L1M4 LINE L1 -1711 4435 4367 400 233 107 0 chr15 84135693 84135796 -1559958 + MER53 DNA DNA 1 114 -75 489 126 0 135 chr15 84136608 84136719 -1559035 - L1MA6 LINE L1 -317 5983 5888 1484 178 16 42 chr15 84136719 84136904 -1558850 + L1MA6 LINE L1 5993 6168 -132 2390 95 0 0 chr15 84136904 84137208 -1558546 + AluSc SINE Alu 1 304 -5 1484 178 16 42 chr15 84137208 84137331 -1558423 + L1MA6 LINE L1 6168 6293 -7 288 272 107 19 chr15 84137488 84137591 -1558163 + L2 LINE L2 3198 3309 -4 2479 74 0 0 chr15 84137617 84137913 -1557841 + AluY SINE Alu 1 296 -15 202 182 0 0 chr15 84137923 84137956 -1557798 + (CA)n Simple_repeat Simple_repeat 2 34 0 1678 188 3 25 chr15 84138823 84139142 -1556612 + AluJo SINE Alu 1 312 0 2334 162 17 2 chr15 84139414 84139821 -1555933 + L1MC3 LINE L1 6686 7098 -687 234 231 19 0 chr15 84139822 84139874 -1555880 + MLT1F1 LTR MaLR 37 89 -478 194 329 25 13 chr15 84140365 84140444 -1555310 - L2 LINE L2 -3 3269 3190 3091 155 53 87 chr15 84140444 84141155 -1554599 + L1M4c LINE L1 12 698 -5686 283 65 43 22 chr15 84141178 84141224 -1554530 + AluSq/x SINE Alu 89 135 -168 2388 80 3 3 chr15 84141224 84141525 -1554229 + AluY SINE Alu 1 301 -10 1910 121 26 42 chr15 84141534 84141840 -1553914 + AluSx SINE Alu 2 302 -10 7208 153 21 17 chr15 84141840 84143163 -1552591 + L1M4c LINE L1 892 2219 -4165 2943 153 45 60 chr15 84143268 84143467 -1552287 - L1MA9 LINE L1 -314 5998 5797 1430 176 0 8 chr15 84143467 84143705 -1552049 + MER46A DNA MER2_type 1 236 0 2943 153 45 60 chr15 84143705 84143718 -1552036 - L1MA9 LINE L1 -515 5797 5785 2251 108 0 10 chr15 84143718 84144032 -1551722 - AluY SINE Alu 0 311 1 2943 153 45 60 chr15 84144032 84144337 -1551417 - L1MA9 LINE L1 -527 5785 5489 2287 85 7 3 chr15 84144337 84144632 -1551122 - AluSq SINE Alu -17 296 1 2943 153 45 60 chr15 84144632 84144740 -1551014 - L1MA9 LINE L1 -823 5489 5381 394 272 76 25 chr15 84145301 84145459 -1550295 - MLT1K LTR MaLR -26 562 397 1228 226 6 21 chr15 84145596 84145934 -1549820 - L1MA9 LINE L1 -745 5401 5095 * 6118 251 70 31 chr15 84145922 84148610 -1547144 - L1M4b LINE L1 -1754 5203 2480 1726 241 85 56 chr15 84148770 84149984 -1545770 - L1M4b LINE L1 -4536 2423 1205 261 188 42 0 chr15 84150184 84150232 -1545522 - L1M4b LINE L1 -5632 1227 1178 2880 264 50 39 chr15 84150404 84151383 -1544371 - L1M4b LINE L1 -5635 1224 11 1685 155 83 44 chr15 84151393 84151755 -1543999 + LOR1b LTR ERV1 1 376 -85 2268 98 3 3 chr15 84151757 84152064 -1543690 + AluY SINE Alu 1 307 -4 21 57 0 0 chr15 84152262 84152297 -1543457 + AT_rich Low_complexity Low_complexity 1 35 0 1624 151 0 0 chr15 84152299 84152538 -1543216 + AluY SINE Alu 1 239 -72 1806 87 56 12 chr15 84153606 84153858 -1541896 + AluSg SINE Alu 32 294 -16 2840 105 11 3 chr15 84153896 84154268 -1541486 - THE1C LTR MaLR 0 375 1 183 361 148 0 chr15 84156215 84156337 -1539417 + L3 LINE CR1 1150 1289 -288 244 257 142 26 chr15 84156396 84156509 -1539245 - MIR SINE MIR -62 200 75 6653 67 1 2 chr15 84156564 84157413 -1538341 - L1PA8 LINE L1 -4 6168 5321 2950 115 2 2 chr15 84157411 84157853 -1537901 + L1P LINE L1 4917 5358 -788 * 1855 208 79 24 chr15 84158070 84158526 -1537228 - MLT1D LTR MaLR 0 505 25 1112 264 35 9 chr15 84159971 84160286 -1535468 + MER46C DNA MER2_type 15 337 -1 409 185 76 0 chr15 84162420 84162512 -1533242 - MER53 DNA DNA -74 115 17 * 426 131 107 0 chr15 84162434 84162518 -1533236 + MER53 DNA DNA 96 188 -1 1860 117 15 0 chr15 84163003 84163276 -1532478 - AluSc SINE Alu -16 293 17 315 204 114 0 chr15 84163775 84163863 -1531891 - MIR SINE MIR -48 214 117 410 154 13 0 chr15 84163910 84163988 -1531766 + (CA)n Simple_repeat Simple_repeat 2 80 0 180 114 171 0 chr15 84164546 84164581 -1531173 + L3 LINE CR1 1360 1400 -177 216 288 0 17 chr15 84164709 84164768 -1530986 + L2 LINE L2 2232 2289 -1025 2077 123 18 24 chr15 84165341 84165443 -1530311 - L1MA5A LINE L1 -6 6291 6190 5438 63 17 5 chr15 84165443 84166095 -1529659 - PABL_A LTR ERV1 0 660 1 2077 123 18 24 chr15 84166095 84166326 -1529428 - L1MA5A LINE L1 -107 6190 5960 652 194 0 0 chr15 84166335 84166443 -1529311 - AluSc SINE Alu -53 256 149 1205 123 4 111 chr15 84166443 84166608 -1529146 - L1MA5A LINE L1 -325 5972 5842 1729 191 0 10 chr15 84166608 84166907 -1528847 - AluJb SINE Alu -16 296 1 1205 123 4 111 chr15 84166907 84166993 -1528761 - L1MA5A LINE L1 -455 5842 5748 1314 241 70 47 chr15 84167060 84167487 -1528267 + L2 LINE L2 2310 2746 -568 227 230 40 14 chr15 84167494 84167568 -1528186 - MLT1I LTR MaLR -5 404 329 265 254 32 0 chr15 84167831 84167894 -1527860 + L2 LINE L2 2729 2793 -521 2037 184 62 14 chr15 84167988 84168423 -1527331 - L1MD2 LINE L1 -2 6357 5902 405 145 48 48 chr15 84169341 84169415 -1526339 + MLT1A1 LTR MaLR 1 74 -291 667 165 0 0 chr15 84169415 84169518 -1526236 + MER46A DNA MER2_type 2 104 -132 1226 169 0 60 chr15 84169518 84169784 -1525970 + L1MA4 LINE L1 5614 5863 -437 834 117 73 29 chr15 84169784 84169921 -1525833 + MER46A DNA MER2_type 94 236 0 * 1687 178 3 20 chr15 84169921 84170224 -1525530 + MLT1A1 LTR MaLR 68 365 0 308 283 0 38 chr15 84170224 84170330 -1525424 + MER5B DNA MER1_type 77 178 0 317 331 80 0 chr15 84171969 84172120 -1523634 - MIR SINE MIR -10 252 90 2275 76 13 10 chr15 84172268 84172572 -1523182 + AluSq SINE Alu 1 305 -8 5068 124 11 0 chr15 84172765 84173492 -1522262 - L1MA5A LINE L1 -11 6286 5552 199 221 257 18 chr15 84173627 84173740 -1522014 + MER5A DNA MER1_type 48 187 -2 * 459 204 10 10 chr15 84173648 84173751 -1522003 - MER5A DNA MER1_type -80 109 7 1124 163 5 0 chr15 84173869 84174053 -1521701 + MLT1C LTR MaLR 1 185 -282 2156 99 3 13 chr15 84174053 84174356 -1521398 + AluSg SINE Alu 1 300 -10 270 256 12 12 chr15 84175482 84175564 -1520190 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 191 309 0 0 chr15 84175808 84175863 -1519891 - MIR3 SINE MIR -40 168 114 420 210 86 74 chr15 84176243 84176405 -1519349 - MER5B DNA MER1_type -14 164 1 211 239 80 0 chr15 84177608 84177721 -1518033 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 24 0 0 0 chr15 84178010 84178034 -1517720 + AT_rich Low_complexity Low_complexity 1 24 0 2307 113 0 3 chr15 84178346 84178657 -1517097 + AluSx SINE Alu 1 310 -2 6794 26 1 0 chr15 84179213 84179953 -1515801 + L1PA5 LINE L1 5414 6154 0 1008 247 145 41 chr15 84180113 84180298 -1515456 - L1MC4a LINE L1 -1873 5935 5771 2150 111 7 0 chr15 84180298 84180586 -1515168 - AluSc SINE Alu -19 290 1 1008 247 145 41 chr15 84180586 84181012 -1514742 - L1MC4a LINE L1 -2037 5771 5260 384 327 151 16 chr15 84181032 84181350 -1514404 - L1MC4a LINE L1 -906 5240 4880 1574 224 63 104 chr15 84181379 84181965 -1513789 + MLT1E LTR MaLR 32 593 0 333 274 107 57 chr15 84181987 84182268 -1513486 - L1MC4a LINE L1 -1299 4847 4553 230 286 51 78 chr15 84182553 84182770 -1512984 - L1MC4a LINE L1 -2254 3892 3682 234 39 0 78 chr15 84182915 84182966 -1512788 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 2326 109 3 0 chr15 84183047 84183359 -1512395 + AluSq SINE Alu 1 313 0 21 82 0 0 chr15 84183622 84183671 -1512083 + AT_rich Low_complexity Low_complexity 1 49 0 282 94 47 0 chr15 84184380 84184444 -1511310 + (TA)n Simple_repeat Simple_repeat 2 68 0 2333 66 0 7 chr15 84184447 84184735 -1511019 - AluSc SINE Alu -23 286 1 21 36 0 0 chr15 84184840 84184868 -1510886 + AT_rich Low_complexity Low_complexity 1 28 0 1792 97 0 8 chr15 84185191 84185428 -1510326 - AluSg/x SINE Alu 0 312 78 303 325 46 31 chr15 84185751 84185945 -1509809 - HAL1b LINE L1 -1100 248 52 554 260 39 15 chr15 84186647 84186865 -1508889 + MLT1E-int LTR MaLR 125 465 -906 2133 96 0 0 chr15 84187031 84187303 -1508451 + AluSc SINE Alu 1 272 -37 180 0 0 0 chr15 84187308 84187328 -1508426 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 29 47 0 0 chr15 84187726 84187769 -1507985 + AT_rich Low_complexity Low_complexity 1 43 0 210 143 0 0 chr15 84187794 84187829 -1507925 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 184 333 171 0 chr15 84187983 84188106 -1507648 + MIR SINE MIR 50 193 -69 209 228 51 51 chr15 84188624 84188703 -1507051 + MER5B DNA MER1_type 95 173 -5 1770 228 73 5 chr15 84189417 84189785 -1505969 + MSTD LTR MaLR 4 396 0 2172 99 39 0 chr15 84190155 84190438 -1505316 - AluSx SINE Alu -18 294 1 25 75 0 0 chr15 84190828 84190881 -1504873 + AT_rich Low_complexity Low_complexity 1 53 0 321 351 12 23 chr15 84191563 84191734 -1504020 + MIR SINE MIR 37 205 -57 739 213 0 0 chr15 84192349 84192494 -1503260 + MER89-int LTR ERV1 7000 7124 -413 1127 142 139 59 chr15 84192494 84192923 -1502831 + LTR54B LTR ERV1 1 496 -2 289 0 49 0 chr15 84193209 84193250 -1502504 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2044 129 0 0 chr15 84193251 84193531 -1502223 - AluSx SINE Alu -32 280 1 477 220 47 27 chr15 84193567 84193717 -1502037 + LTR54B-int LTR ERV1 329 481 -7056 386 272 0 0 chr15 84193925 84194006 -1501748 + MER89-int LTR ERV1 2441 2521 -3810 1236 173 36 9 chr15 84194014 84194239 -1501515 - MER46A DNA MER2_type 0 236 6 257 271 0 0 chr15 84194244 84194303 -1501451 + MER89-int LTR ERV1 552 610 -6927 * 360 179 80 27 chr15 84194301 84194413 -1501341 + MER89-int LTR ERV1 712 829 -6708 525 184 117 17 chr15 84194415 84194594 -1501160 + LTR54B LTR ERV1 296 492 -6 445 250 40 32 chr15 84195100 84195224 -1500530 - MLT1I LTR MaLR -204 205 81 481 229 29 0 chr15 84197049 84197154 -1498600 - MLT1I LTR MaLR -8 401 294 2223 107 10 0 chr15 84197485 84197783 -1497971 - AluSx SINE Alu -11 301 1 2198 80 0 11 chr15 84198566 84198882 -1496872 + AluY SINE Alu 1 313 0 195 315 154 15 chr15 84199313 84199443 -1496311 - L2 LINE L2 -7 3306 3159 333 216 84 60 chr15 84199554 84199721 -1496033 + MLT1J1 LTR MaLR 42 212 -234 585 213 24 53 chr15 84199778 84199947 -1495807 + MLT1A2 LTR MaLR 4 167 -207 2405 107 0 0 chr15 84199947 84200257 -1495497 + AluSx SINE Alu 1 310 -2 2111 163 69 15 chr15 84200293 84200697 -1495057 + MSTB LTR MaLR 1 426 0 275 313 131 32 chr15 84200738 84201261 -1494493 + L2 LINE L2 2695 3271 -42 1475 236 35 75 chr15 84201579 84202100 -1493654 - MLT1D LTR MaLR -1 504 5 2155 107 3 7 chr15 84202195 84202486 -1493268 - AluSx SINE Alu -22 290 1 262 337 49 10 chr15 84203850 84203953 -1491801 + MER89-int LTR ERV1 6244 6455 -345 301 248 79 10 chr15 84203953 84204054 -1491700 + HERVL40 LTR ERVL 2758 2865 -172 540 256 8 0 chr15 84204065 84204182 -1491572 + HERVL40 LTR ERVL 5411 5528 -2 318 221 32 11 chr15 84204184 84204279 -1491475 + LTR40a LTR ERVL 1 97 -422 836 244 0 6 chr15 84204279 84204451 -1491303 - FRAM SINE Alu -5 171 1 1147 253 19 41 chr15 84204474 84204842 -1490912 + LTR40b LTR ERVL 102 461 -1 1265 151 0 15 chr15 84205614 84205813 -1489941 - AluSg/x SINE Alu -4 308 113 2563 241 73 11 chr15 84205862 84206477 -1489277 + MER82 DNA MER2_type 1 653 0 233 320 57 33 chr15 84207507 84207629 -1488125 - L2 LINE L2 -10 3262 3138 2019 140 0 32 chr15 84207657 84207971 -1487783 + AluSx SINE Alu 1 304 -8 28 48 0 0 chr15 84208977 84209019 -1486735 + AT_rich Low_complexity Low_complexity 1 42 0 4951 98 62 28 chr15 84209901 84210696 -1485058 - L1PA7 LINE L1 0 6154 5333 192 347 48 60 chr15 84210720 84210739 -1485015 + MIR SINE MIR 81 99 -163 2343 191 65 63 chr15 84210739 84211342 -1484412 - MER77 LTR ERV1 0 605 2 192 347 48 60 chr15 84211342 84211489 -1484265 + MIR SINE MIR 99 245 -17 1676 224 36 50 chr15 84211533 84211974 -1483780 + L1MDa LINE L1 185 619 -5921 270 231 0 0 chr15 84211985 84212037 -1483717 + LTR30 LTR ERV1 1 52 -670 2162 170 13 66 chr15 84212037 84212490 -1483264 + LTR12 LTR ERV1 53 481 -233 492 189 168 35 chr15 84212519 84212662 -1483092 + L1MDa LINE L1 661 822 -5718 762 285 95 3 chr15 84212755 84213060 -1482694 + L1MDa LINE L1 1570 1902 -4638 667 213 158 0 chr15 84213535 84213699 -1482055 - MER3 DNA MER1_type -18 191 2 471 297 22 11 chr15 84214731 84214913 -1480841 - MER5A DNA MER1_type -2 187 4 197 318 47 24 chr15 84214978 84215063 -1480691 + MIR SINE MIR 20 106 -156 202 214 14 14 chr15 84215283 84215353 -1480401 + CT-rich Low_complexity Low_complexity 4 73 0 1208 162 112 35 chr15 84216201 84216460 -1479294 - AluJo SINE Alu -33 279 1 858 136 52 7 chr15 84216646 84216800 -1478954 - L1MA10 LINE L1 0 6334 6174 546 215 0 0 chr15 84216801 84216931 -1478823 + (TG)n Simple_repeat Simple_repeat 2 131 0 770 121 121 0 chr15 84216932 84217064 -1478690 - L1MB1 LINE L1 -23 6166 6019 1571 164 37 3 chr15 84217515 84217814 -1477940 - L1MA9 LINE L1 -10 6302 5994 1805 188 6 11 chr15 84219943 84220294 -1475460 - L1MA7 LINE L1 -152 6139 5791 298 155 216 41 chr15 84220291 84220388 -1475366 + L1MA7 LINE L1 6171 6284 -7 * 360 233 23 108 chr15 84222253 84222429 -1473325 - MER103 DNA DNA -1 165 5 751 205 0 0 chr15 84222500 84222627 -1473127 + FLAM_A SINE Alu 2 128 -5 2192 142 70 28 chr15 84222856 84223286 -1472468 + LTR29 LTR ERV1 1 448 -174 2397 81 3 3 chr15 84223326 84223635 -1472119 + AluY SINE Alu 1 309 -2 1343 165 78 109 chr15 84223674 84224281 -1471473 + MER4C LTR ERV1 1 464 -1 1991 150 35 30 chr15 84225185 84225558 -1470196 + THE1C LTR MaLR 1 375 0 2157 209 25 66 chr15 84225899 84226463 -1469291 + MER87 LTR ERV1 1 541 0 1432 200 118 46 chr15 84226916 84227436 -1468318 + LTR48 LTR ERV1 1 739 -48 21 0 0 0 chr15 84228352 84228373 -1467381 + AT_rich Low_complexity Low_complexity 1 21 0 285 333 34 14 chr15 84228916 84229063 -1466691 - MIR SINE MIR 0 262 113 1683 190 7 0 chr15 84230369 84230648 -1465106 - AluJb SINE Alu -31 281 1 1144 158 0 0 chr15 84230997 84231174 -1464580 + FRAM SINE Alu 1 169 -7 189 0 0 0 chr15 84234377 84234398 -1461356 + (T)n Simple_repeat Simple_repeat 1 21 0 298 155 216 41 chr15 84236416 84236513 -1459241 - L1MA7 LINE L1 -7 6284 6171 * 1805 188 6 11 chr15 84236510 84236861 -1458893 + L1MA7 LINE L1 5791 6139 -152 1641 154 37 0 chr15 84238990 84239288 -1456466 + L1MA9 LINE L1 5994 6302 -10 432 289 20 13 chr15 84240212 84240361 -1455393 + MIR SINE MIR 48 197 -65 2154 64 34 30 chr15 84240871 84241167 -1454587 - AluY SINE Alu -14 297 1 240 344 79 20 chr15 84241737 84241990 -1453764 - L2 LINE L2 -198 3074 2807 1983 123 7 30 chr15 84242039 84242339 -1453415 - AluSg SINE Alu -17 293 1 189 147 0 0 chr15 84244433 84244467 -1451287 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 220 137 39 0 chr15 84244507 84244558 -1451196 + CT-rich Low_complexity Low_complexity 2 54 0 351 290 36 22 chr15 84244600 84244738 -1451016 - L2 LINE L2 -7 3265 3126 407 305 31 0 chr15 84244877 84245005 -1450749 - MIR SINE MIR -43 219 88 46 0 0 0 chr15 84245336 84245382 -1450372 + GC_rich Low_complexity Low_complexity 1 46 0 4187 87 1 96 chr15 84245497 84246246 -1449508 + MER57-int LTR ERV1 4009 4686 -2851 3224 180 9 24 chr15 84246246 84246912 -1448842 + LTR8 LTR ERV1 1 656 -35 23 33 0 0 chr15 84247035 84247065 -1448689 + AT_rich Low_complexity Low_complexity 1 30 0 1128 134 6 0 chr15 84247104 84247275 -1448479 - AluSq SINE Alu -19 294 123 761 67 0 0 chr15 84247297 84247402 -1448352 - AluY SINE Alu 0 311 207 891 97 0 0 chr15 84247402 84247515 -1448239 - AluSp SINE Alu -200 113 1 192 330 21 32 chr15 84248519 84248613 -1447141 + MER5A DNA MER1_type 61 153 -36 305 257 77 74 chr15 84249138 84249991 -1445763 - L1MC4 LINE L1 0 8042 7239 1635 174 10 43 chr15 84249991 84250296 -1445458 - AluJo SINE Alu -17 295 1 305 257 77 74 chr15 84250296 84250528 -1445226 - L1MC4 LINE L1 -803 7239 7009 2214 152 26 26 chr15 84250548 84250969 -1444785 + L1MB3 LINE L1 5762 6182 -1 653 246 100 55 chr15 84250986 84251457 -1444297 - MLT1G1 LTR MaLR -28 562 46 953 268 116 11 chr15 84251555 84251910 -1443844 - L1MC4a LINE L1 -870 6938 6547 847 177 0 0 chr15 84251910 84252040 -1443714 + AluJb SINE Alu 1 130 -182 24 0 0 0 chr15 84252040 84252064 -1443690 + AT_rich Low_complexity Low_complexity 1 24 0 434 296 72 58 chr15 84252070 84252448 -1443306 - L1MC4a LINE L1 -1283 6525 6139 413 75 0 15 chr15 84252448 84252515 -1443239 + (CA)n Simple_repeat Simple_repeat 2 67 0 434 296 72 58 chr15 84252515 84252582 -1443172 - L1MC4a LINE L1 -1669 6139 6074 2462 172 19 2 chr15 84253341 84253760 -1441994 + MSTB LTR MaLR 1 426 0 1650 151 155 3 chr15 84254423 84254740 -1441014 + MLT1A1 LTR MaLR 1 365 0 2370 109 0 0 chr15 84254940 84255251 -1440503 - AluSq SINE Alu -2 311 1 199 243 57 0 chr15 84255303 84255373 -1440381 + L2 LINE L2 1949 2022 -1292 1994 119 7 52 chr15 84256439 84256749 -1439005 + AluSq SINE Alu 1 296 -17 268 340 79 20 chr15 84256798 84257051 -1438703 + L2 LINE L2 2807 3074 -198 2327 58 34 20 chr15 84257621 84257916 -1437838 + AluY SINE Alu 1 299 -12 432 289 20 13 chr15 84258426 84258575 -1437179 - MIR SINE MIR -65 197 48 1787 181 17 31 chr15 84259365 84259725 -1436029 + MLT1A1 LTR MaLR 11 365 0 207 176 39 20 chr15 84259734 84259785 -1435969 + GA-rich Low_complexity Low_complexity 4 55 0 288 284 74 29 chr15 84260708 84260849 -1434905 + MIR SINE MIR 13 154 -65 193 160 20 20 chr15 84260859 84260909 -1434845 + (TA)n Simple_repeat Simple_repeat 2 51 0 27077 146 11 19 chr15 84261539 84266545 -1429209 + L1PA10 LINE L1 554 5587 -874 2138 144 49 20 chr15 84266545 84266893 -1428861 - THE1B LTR MaLR -6 358 1 6196 106 9 5 chr15 84266893 84267783 -1427971 + L1PA10 LINE L1 5590 6483 0 1450 141 0 33 chr15 84268236 84268478 -1427276 - AluJb SINE Alu -19 293 60 401 321 42 17 chr15 84268505 84268742 -1427012 - LTR16A1 LTR ERVL -2 455 213 283 287 21 0 chr15 84268963 84269057 -1426697 + MER53 DNA DNA 94 189 0 300 253 107 15 chr15 84270012 84270139 -1425615 - L1MD3 LINE L1 0 7808 7685 304 231 0 0 chr15 84270141 84270193 -1425561 - L1MDa LINE L1 -5887 653 602 1354 229 42 55 chr15 84270274 84270676 -1425078 - L1MDa LINE L1 -6128 412 16 644 246 141 113 chr15 84271323 84272103 -1423651 + L1MC4 LINE L1 7155 7956 -86 1049 235 75 14 chr15 84272120 84272401 -1423353 + MER58B DNA MER1_type 1 298 -43 826 264 164 37 chr15 84272406 84273015 -1422739 + L1ME3A LINE L1 5480 6169 -1 1680 189 0 19 chr15 84273018 84273335 -1422419 + AluJo SINE Alu 1 311 -1 195 245 0 19 chr15 84273423 84273476 -1422278 - MIR SINE MIR -109 153 102 397 325 61 20 chr15 84274394 84274591 -1421163 - MIR SINE MIR -23 239 35 288 57 0 0 chr15 84274660 84274695 -1421059 + U2 snRNA snRNA 2 36 -152 542 86 12 0 chr15 84274810 84274891 -1420863 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 298 147 29 15 chr15 84274886 84274954 -1420800 + G-rich Low_complexity Low_complexity 4 72 0 * 834 149 23 6 chr15 84274945 84275120 -1420634 + GA-rich Low_complexity Low_complexity 1 178 0 2423 164 20 41 chr15 84276629 84277067 -1418687 - MSTB1 LTR MaLR -3 429 1 1515 272 108 20 chr15 84277799 84278511 -1417243 - HERVL40 LTR ERVL -271 5259 4461 913 271 98 46 chr15 84278509 84278897 -1416857 - HERVL40 LTR ERVL -1367 4163 3756 * 896 224 29 0 chr15 84278916 84279121 -1416633 - MER20 DNA MER1_type 0 219 9 319 324 35 35 chr15 84279401 84279546 -1416208 + MIR SINE MIR 20 164 -98 200 260 27 27 chr15 84279977 84280050 -1415704 + GA-rich Low_complexity Low_complexity 6 78 0 21 0 0 0 chr15 84280452 84280473 -1415281 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 84280745 84280801 -1414953 + AT_rich Low_complexity Low_complexity 1 56 0 2127 102 0 20 chr15 84281096 84281400 -1414354 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr15 84281888 84281913 -1413841 + AT_rich Low_complexity Low_complexity 1 25 0 1952 112 0 11 chr15 84281913 84282190 -1413564 - AluSx SINE Alu -2 310 37 575 162 0 10 chr15 84282225 84282324 -1413430 + MER4A LTR ERV1 1 98 -566 1722 149 3 72 chr15 84282326 84282695 -1413059 + MER4A LTR ERV1 263 664 0 1365 275 113 45 chr15 84282724 84284300 -1411454 - L1ME3A LINE L1 -223 6016 4335 219 69 0 0 chr15 84285105 84285134 -1410620 + (TC)n Simple_repeat Simple_repeat 2 30 0 275 276 13 40 chr15 84285456 84285532 -1410222 + MIR3 SINE MIR 129 202 -6 485 81 27 0 chr15 84285568 84285642 -1410112 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 1596 105 5 5 chr15 84286370 84286589 -1409165 + AluSg/x SINE Alu 90 308 -4 1410 180 10 39 chr15 84287363 84287674 -1408080 - AluJb SINE Alu -10 302 1 1004 118 0 0 chr15 84287674 84287809 -1407945 - AluSq/x SINE Alu -178 135 1 1457 274 99 16 chr15 84288524 84289031 -1406723 - MLT1H1 LTR MaLR -6 549 1 228 229 33 0 chr15 84289113 84289174 -1406580 + MLT1J LTR MaLR 105 167 -344 189 0 0 0 chr15 84290145 84290166 -1405588 + (A)n Simple_repeat Simple_repeat 1 21 0 286 277 22 51 chr15 84290187 84290324 -1405430 - L1ME3A LINE L1 -4729 1667 1535 591 278 81 19 chr15 84290327 84290536 -1405218 - MER58A DNA MER1_type 0 224 3 226 353 23 15 chr15 84290681 84290814 -1404940 - L1ME3A LINE L1 -4882 1323 1190 1026 88 0 7 chr15 84290846 84290983 -1404771 - AluY SINE Alu -175 136 1 207 240 20 0 chr15 84291012 84291062 -1404692 + MIR SINE MIR 103 153 -109 227 321 55 0 chr15 84291071 84291180 -1404574 - LTR67 LTR ERVL -2 555 441 1919 141 0 0 chr15 84292806 84293083 -1402671 + AluSx SINE Alu 28 304 -8 2430 43 4 0 chr15 84293128 84293409 -1402345 + AluY SINE Alu 1 282 -29 25 0 0 0 chr15 84293416 84293441 -1402313 + AT_rich Low_complexity Low_complexity 1 25 0 1266 111 6 0 chr15 84293480 84293651 -1402103 - AluSq SINE Alu -19 294 123 853 38 0 0 chr15 84293673 84293778 -1401976 - AluY SINE Alu 0 311 207 878 97 0 0 chr15 84293778 84293891 -1401863 - AluSp SINE Alu -200 113 1 3989 188 28 35 chr15 84294489 84295340 -1400414 + L1MB3 LINE L1 5332 6176 -7 466 219 0 48 chr15 84295341 84295446 -1400308 + AluSq SINE Alu 120 219 -94 565 108 49 49 chr15 84295848 84295950 -1399804 + AluSg/x SINE Alu 206 307 -2 1909 152 0 29 chr15 84296384 84296699 -1399055 + AluJb SINE Alu 1 306 -6 2501 63 0 16 chr15 84296699 84297015 -1398739 + AluY SINE Alu 1 311 0 2040 228 23 21 chr15 84298689 84299219 -1396535 + MER74A LTR ERVL 15 545 -13 1630 122 13 4 chr15 84299222 84299501 -1396253 + AluSx SINE Alu 44 324 0 2137 136 0 0 chr15 84300361 84300662 -1395092 - AluSg SINE Alu -9 301 1 324 294 124 90 chr15 84301033 84301185 -1394569 - L1ME3A LINE L1 -5744 461 316 776 255 39 10 chr15 84301185 84301389 -1394365 - MER63A DNA MER1_type 0 210 1 324 294 124 90 chr15 84301389 84301590 -1394164 - L1ME3A LINE L1 -5889 316 96 25 51 0 0 chr15 84301918 84301957 -1393797 + AT_rich Low_complexity Low_complexity 1 39 0 32 43 0 0 chr15 84301985 84302031 -1393723 + AT_rich Low_complexity Low_complexity 1 46 0 1945 154 0 3 chr15 84302225 84302530 -1393224 + AluSx SINE Alu 1 304 -8 2893 136 9 59 chr15 84302958 84303476 -1392278 + LTR12 LTR ERV1 4 478 -236 569 253 89 72 chr15 84304481 84304984 -1390770 + L1M4 LINE L1 2769 3280 -2866 352 217 0 0 chr15 84305010 84305079 -1390675 + AluJ/FLAM SINE Alu 1 69 -233 1449 150 63 8 chr15 84305079 84305333 -1390421 + AluJb SINE Alu 30 297 -15 1188 248 80 30 chr15 84307489 84307929 -1387825 + MLT1C LTR MaLR 6 467 0 490 301 17 23 chr15 84308155 84308328 -1387426 - L1MC/D LINE L1 -2063 5745 5574 1182 133 9 67 chr15 84308726 84308951 -1386803 - L1MB3 LINE L1 -10 6173 5962 22 0 0 0 chr15 84309012 84309034 -1386720 + AT_rich Low_complexity Low_complexity 1 22 0 1207 129 40 0 chr15 84309165 84309367 -1386387 - L1MA8 LINE L1 -7 6284 6075 891 327 87 43 chr15 84309403 84310154 -1385600 - L1MC/D LINE L1 -1339 4807 4002 306 0 0 0 chr15 84310154 84310188 -1385566 + (CA)n Simple_repeat Simple_repeat 2 35 0 891 327 87 43 chr15 84310188 84310399 -1385355 - L1MC/D LINE L1 -2144 4002 3802 799 199 20 165 chr15 84310581 84310932 -1384822 + MER51C LTR ERV1 341 640 0 21 0 0 0 chr15 84311251 84311272 -1384482 + AT_rich Low_complexity Low_complexity 1 21 0 1819 108 100 4 chr15 84311537 84311816 -1383938 - AluSc SINE Alu -3 306 1 416 310 91 44 chr15 84312000 84312406 -1383348 - HAL1b LINE L1 -691 657 233 376 306 46 27 chr15 84312927 84313146 -1382608 - HAL1 LINE L1 -1159 1348 1126 2040 135 10 0 chr15 84313264 84313560 -1382194 - AluSx SINE Alu -13 299 1 243 248 79 30 chr15 84313959 84314060 -1381694 - MIR SINE MIR -50 212 107 342 282 106 37 chr15 84314385 84314630 -1381124 + L1ME LINE L1 5493 5754 -367 6622 176 42 4 chr15 84314904 84316153 -1379601 + L1MC3 LINE L1 5326 6621 -1164 212 147 0 0 chr15 84316153 84316187 -1379567 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 1265 244 19 4 chr15 84316758 84317029 -1378725 + L1MC3 LINE L1 6594 6868 -917 3027 174 100 60 chr15 84317036 84317409 -1378345 + L1MC3 LINE L1 7019 7376 -409 1846 138 0 31 chr15 84317409 84317700 -1378054 + AluJo SINE Alu 5 286 -26 3027 174 100 60 chr15 84317700 84318056 -1377698 + L1MC3 LINE L1 7376 7777 -8 1972 115 79 55 chr15 84319911 84320277 -1375477 + THE1C LTR MaLR 1 375 0 1925 251 31 36 chr15 84320343 84320921 -1374833 - MER90 LTR ERV1 0 575 1 2594 141 33 0 chr15 84321029 84321419 -1374335 + MER57A LTR ERV1 1 403 0 8291 129 17 10 chr15 84321419 84322674 -1373080 + MER57A-int LTR ERV1 1 1264 -6273 * 8502 156 58 31 chr15 84322659 84324478 -1371276 + MER41-int LTR ERV1 506 3265 -2681 2273 103 3 10 chr15 84324481 84324793 -1370961 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr15 84324793 84324818 -1370936 + AT_rich Low_complexity Low_complexity 1 25 0 2127 102 0 20 chr15 84325305 84325609 -1370145 - AluSx SINE Alu -14 298 1 28 71 0 0 chr15 84325904 84325960 -1369794 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 84326232 84326253 -1369501 + AT_rich Low_complexity Low_complexity 1 21 0 183 330 48 10 chr15 84326561 84326664 -1369090 + L2 LINE L2 1846 1952 -1362 319 324 35 35 chr15 84327159 84327304 -1368450 - MIR SINE MIR -98 164 20 896 224 29 0 chr15 84327584 84327789 -1367965 + MER20 DNA MER1_type 9 219 0 821 263 62 53 chr15 84327808 84328146 -1367608 + HERVL40 LTR ERVL 3756 4096 -1434 1526 269 113 22 chr15 84328233 84328905 -1366849 + HERVL40 LTR ERVL 4502 5259 -271 2423 164 20 41 chr15 84329637 84330075 -1365679 + MSTB1 LTR MaLR 1 429 -3 762 156 24 6 chr15 84331581 84331748 -1364006 + CT-rich Low_complexity Low_complexity 1 170 0 298 147 29 15 chr15 84331739 84331807 -1363947 + C-rich Low_complexity Low_complexity 4 72 0 * 509 99 12 0 chr15 84331802 84331883 -1363871 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 307 250 147 49 chr15 84332348 84332532 -1363222 + LTR33A LTR ERVL 310 511 -12 262 226 151 38 chr15 84332600 84332706 -1363048 - L2 LINE L2 -179 3093 2976 960 301 75 31 chr15 84332728 84333431 -1362323 - ERVL LTR ERVL -2662 2334 1713 816 204 0 13 chr15 84333449 84333601 -1362153 + FRAM SINE Alu 3 152 -24 422 288 79 70 chr15 84333716 84334161 -1361593 - ERVL LTR ERVL -4193 1571 1123 528 288 141 0 chr15 84334428 84334591 -1361163 + MER5A DNA MER1_type 4 189 0 585 295 27 13 chr15 84334628 84334875 -1360879 - ERVL LTR ERVL -4969 698 435 24 0 0 0 chr15 84335092 84335116 -1360638 + AT_rich Low_complexity Low_complexity 1 24 0 2166 112 0 0 chr15 84335116 84335401 -1360353 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr15 84335401 84335424 -1360330 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2155 122 0 10 chr15 84335611 84335915 -1359839 - AluSx SINE Alu -11 301 1 198 0 0 0 chr15 84336511 84336533 -1359221 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 454 246 64 60 chr15 84336551 84336914 -1358840 - MLT1H LTR MaLR -98 457 32 218 344 22 0 chr15 84336979 84337069 -1358685 + L2 LINE L2 3181 3272 0 2246 91 0 7 chr15 84337633 84337960 -1357794 - AluY SINE Alu 0 311 1 285 252 84 17 chr15 84339377 84339496 -1356258 + L1ME4a LINE L1 5991 6117 -4 1080 160 13 179 chr15 84339734 84340115 -1355639 + L1MC4 LINE L1 6458 6775 -1267 554 237 66 33 chr15 84340132 84340284 -1355470 + MER77 LTR ERV1 41 197 -408 500 226 133 61 chr15 84340336 84340517 -1355237 + MER77 LTR ERV1 177 370 -235 263 283 119 87 chr15 84341302 84341521 -1354233 - L2 LINE L2 0 3272 3047 221 0 35 0 chr15 84341869 84341898 -1353856 + (TA)n Simple_repeat Simple_repeat 2 31 0 425 350 102 39 chr15 84343366 84343903 -1351851 - L2 LINE L2 -1 3271 2703 4078 252 54 16 chr15 84344204 84345077 -1350677 + L1M4 LINE L1 2960 3905 -2241 985 63 87 0 chr15 84345077 84345204 -1350550 + MER85 DNA T2_type 1 138 -1 4078 252 54 16 chr15 84345204 84345689 -1350065 + L1M4 LINE L1 3905 4370 -1776 732 221 21 32 chr15 84346190 84346380 -1349374 + L1 LINE L1 4120 4307 -1839 6127 86 20 1 chr15 84346393 84347265 -1348489 + L1M3e LINE L1 2117 2986 -4579 1853 187 3 0 chr15 84348071 84348376 -1347378 - AluJb SINE Alu -6 306 1 1133 158 0 0 chr15 84348723 84348900 -1346854 + FRAM SINE Alu 1 169 -7 198 0 0 0 chr15 84352102 84352124 -1343630 + (T)n Simple_repeat Simple_repeat 1 22 0 8384 138 26 35 chr15 84352527 84352675 -1343079 - Tigger1 DNA MER2_type 0 2418 2270 2261 129 49 22 chr15 84352675 84353040 -1342714 - THE1C LTR MaLR 0 375 1 8384 138 26 35 chr15 84353040 84353260 -1342494 - Tigger1 DNA MER2_type -148 2270 2049 2043 89 4 4 chr15 84353260 84353531 -1342223 + AluSc SINE Alu 1 271 -38 222 37 0 0 chr15 84353535 84353562 -1342192 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8384 138 26 35 chr15 84353562 84354605 -1341149 - Tigger1 DNA MER2_type -372 2046 1014 655 226 0 23 chr15 84354608 84354741 -1341013 + FLAM_C SINE Alu 3 132 -1 1595 131 31 8 chr15 84354754 84355013 -1340741 - Tigger1 DNA MER2_type -1918 500 236 7851 127 146 31 chr15 84355016 84356536 -1339218 - pTR5 LTR ERV1 0 2438 744 1358 129 4 98 chr15 84356536 84356800 -1338954 - Tigger1 DNA MER2_type -2178 240 2 21 0 0 0 chr15 84357491 84357512 -1338242 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr15 84358745 84358772 -1336982 + (TC)n Simple_repeat Simple_repeat 2 28 0 203 200 22 0 chr15 84358971 84359016 -1336738 + L2 LINE L2 3227 3272 0 2229 119 0 3 chr15 84359336 84359647 -1336107 + AluSx SINE Alu 3 312 0 375 199 28 21 chr15 84359841 84359982 -1335772 + CT-rich Low_complexity Low_complexity 3 144 0 2057 227 84 23 chr15 84360120 84360718 -1335036 - MER92B LTR ERV1 -1 635 2 476 297 31 0 chr15 84361194 84361322 -1334432 + MIR SINE MIR 88 219 -43 343 290 36 22 chr15 84361461 84361599 -1334155 + L2 LINE L2 3126 3265 -7 199 157 39 0 chr15 84361641 84361692 -1334062 + GA-rich Low_complexity Low_complexity 2 54 0 189 147 0 0 chr15 84361732 84361766 -1333988 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 2103 119 0 55 chr15 84363860 84364188 -1331566 + AluSg SINE Alu 1 310 0 210 37 0 0 chr15 84365358 84365385 -1330369 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1961 127 48 3 chr15 84365610 84365901 -1329853 - AluSx SINE Alu -8 304 1 2388 75 20 3 chr15 84366922 84367228 -1328526 - AluY SINE Alu 0 311 1 1493 160 30 15 chr15 84367228 84367491 -1328263 - AluJo SINE Alu -17 295 29 3814 137 79 12 chr15 84367689 84368331 -1327423 + LTR12 LTR ERV1 1 685 -3 1575 148 33 30 chr15 84368660 84368931 -1326823 + AluJb SINE Alu 16 287 -25 2376 156 47 5 chr15 84369090 84369513 -1326241 + L1PA14 LINE L1 5721 6161 0 34 0 0 0 chr15 84369527 84369561 -1326193 + AT_rich Low_complexity Low_complexity 1 34 0 1105 158 98 24 chr15 84369594 84369891 -1325863 + MER33 DNA MER1_type 6 324 0 629 275 48 37 chr15 84370124 84370380 -1325374 - MLT2F LTR ERVL -9 654 396 929 236 11 0 chr15 84370380 84370562 -1325192 - MER63A DNA MER1_type 0 210 27 1534 261 20 23 chr15 84370588 84370987 -1324767 - MLT2F LTR ERVL -265 398 1 348 296 83 0 chr15 84371002 84371134 -1324620 - MIR SINE MIR -109 153 11 7455 132 14 6 chr15 84371149 84373384 -1322370 + L1MA2 LINE L1 4048 6303 -1 33 0 0 0 chr15 84373385 84373418 -1322336 + AT_rich Low_complexity Low_complexity 1 33 0 1842 140 60 3 chr15 84373637 84373922 -1321832 + AluSx SINE Alu 1 301 -11 1467 182 64 10 chr15 84374796 84375092 -1320662 + AluJo SINE Alu 1 312 0 1106 239 95 21 chr15 84375945 84376209 -1319545 - L1M4 LINE L1 -920 5226 4918 186 43 0 0 chr15 84376209 84376232 -1319522 + (CA)n Simple_repeat Simple_repeat 2 24 0 1106 239 95 21 chr15 84376232 84376390 -1319364 - L1M4 LINE L1 -1228 4918 4773 260 357 18 52 chr15 84376398 84376726 -1319028 - L1MCc LINE L1 -6088 335 19 2407 149 45 12 chr15 84376956 84377412 -1318342 + Tigger2 DNA MER2_type 1 2717 -1 1798 173 36 15 chr15 84377705 84378041 -1317713 - MER2 DNA MER2_type -1 343 1 1689 127 0 4 chr15 84378465 84378702 -1317052 + AluSq SINE Alu 1 236 -77 23 0 0 0 chr15 84378713 84378736 -1317018 + AT_rich Low_complexity Low_complexity 1 23 0 1843 156 0 21 chr15 84378928 84379216 -1316538 + AluJo SINE Alu 1 282 -30 1434 205 79 3 chr15 84379335 84379638 -1316116 + MLT1E2 LTR MaLR 135 460 -166 516 167 21 10 chr15 84379638 84379734 -1316020 + MER4A LTR ERV1 2 98 -566 * 1718 168 11 19 chr15 84379730 84380082 -1315672 + MER4A LTR ERV1 257 664 0 641 239 38 0 chr15 84380083 84380242 -1315512 + MLT1E2 LTR MaLR 459 623 -1 780 254 152 72 chr15 84381138 84381588 -1314166 + MER34C LTR ERV1 4 505 -80 2040 128 3 13 chr15 84381588 84381886 -1313868 - AluSx SINE Alu -15 297 3 780 254 152 72 chr15 84381886 84381974 -1313780 + MER34C LTR ERV1 505 585 0 1168 88 6 50 chr15 84381999 84382180 -1313574 + MER4A LTR ERV1 1 173 -491 1691 94 5 0 chr15 84382189 84382412 -1313342 + MER4E LTR ERV1 3 226 -553 1168 88 6 50 chr15 84382443 84382624 -1313130 + MER4A LTR ERV1 1 173 -491 5087 122 14 38 chr15 84382633 84383094 -1312660 + MER4E LTR ERV1 3 473 -306 1094 23 8 0 chr15 84383094 84383227 -1312527 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1927 101 26 4 chr15 84383236 84383504 -1312250 - AluSx SINE Alu -38 274 1 5087 122 14 38 chr15 84383504 84383828 -1311926 + MER4E LTR ERV1 481 779 0 2005 138 72 52 chr15 84383832 84384237 -1311517 + MER4A LTR ERV1 252 664 0 2369 92 3 19 chr15 84385158 84385475 -1310279 + AluSq SINE Alu 2 313 0 572 230 7 7 chr15 84385492 84385627 -1310127 + FAM SINE Alu 1 135 -50 338 256 54 14 chr15 84385729 84385913 -1309841 - MER34 LTR ERV1 -3 746 447 242 196 37 93 chr15 84385941 84385977 -1309777 - LTR48 LTR ERV1 -301 486 450 3207 188 21 65 chr15 84385977 84386700 -1309054 + LTR8 LTR ERV1 1 691 0 242 196 37 93 chr15 84386700 84386770 -1308984 - LTR48 LTR ERV1 -337 450 386 1247 103 11 0 chr15 84386770 84386944 -1308810 + MER41B LTR ERV1 1 176 -459 2180 94 0 10 chr15 84386945 84387273 -1308481 + AluY SINE Alu 1 311 0 192 344 22 0 chr15 84387835 84387925 -1307829 - L2 LINE L2 0 3272 3181 451 238 72 68 chr15 84387990 84388353 -1307401 + MLT1H LTR MaLR 32 457 -98 198 0 0 0 chr15 84388371 84388393 -1307361 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2174 122 0 10 chr15 84388989 84389293 -1306461 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr15 84389480 84389503 -1306251 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2186 112 0 0 chr15 84389503 84389788 -1305966 - AluSx SINE Alu -27 285 1 24 0 0 0 chr15 84389788 84389812 -1305942 + AT_rich Low_complexity Low_complexity 1 24 0 580 295 27 13 chr15 84390029 84390276 -1305478 + ERVL LTR ERVL 435 698 -4969 478 294 141 0 chr15 84390313 84390476 -1305278 - MER5A DNA MER1_type 0 189 4 437 287 79 68 chr15 84390744 84391187 -1304567 + ERVL LTR ERVL 1124 1571 -4193 821 204 0 13 chr15 84391302 84391454 -1304300 - FRAM SINE Alu -24 152 3 952 306 81 34 chr15 84391472 84392175 -1303579 + ERVL LTR ERVL 1713 2452 -2662 255 214 129 0 chr15 84392197 84392267 -1303487 + L2 LINE L2 2976 3054 -218 301 261 147 49 chr15 84392371 84392555 -1303199 - LTR33A LTR ERVL -12 511 310 645 0 0 0 chr15 84394594 84394666 -1301088 - tRNA-Glu-GAA tRNA tRNA -3 72 1 2294 94 24 3 chr15 84395283 84395613 -1300141 + L1PA12 LINE L1 5824 6160 -8 569 260 123 10 chr15 84397076 84397280 -1298474 + MLT1J2 LTR MaLR 195 421 -29 920 94 8 0 chr15 84398043 84398171 -1297583 + AluSc SINE Alu 179 307 -2 239 204 37 0 chr15 84398555 84398609 -1297145 - MIR SINE MIR -90 118 63 951 120 15 29 chr15 84398718 84398884 -1296870 - MER41-int LTR ERV1 -3095 2851 1214 318 175 0 0 chr15 84399001 84399058 -1296696 - FAM SINE Alu -3 176 120 327 215 13 0 chr15 84399312 84399391 -1296363 + MER116 DNA Mariner 1 80 0 697 209 44 6 chr15 84399578 84399736 -1296018 - MER69 DNA AcHobo -2343 183 20 2545 127 26 0 chr15 84400331 84400718 -1295036 - MER57A LTR ERV1 -6 397 1 1384 88 156 0 chr15 84400725 84400930 -1294824 - MER57A-int LTR ERV1 -22 7515 7279 815 76 23 38 chr15 84400930 84401061 -1294693 - LTR54B LTR ERV1 -367 131 3 17174 98 30 5 chr15 84401061 84403465 -1292289 - MER57A-int LTR ERV1 -391 7146 4683 4354 116 3 18 chr15 84403465 84404092 -1291662 - LTR8 LTR ERV1 0 691 74 1613 203 65 46 chr15 84454092 84454347 -1241407 - L1 LINE L1 -1296 4850 4580 1894 140 3 56 chr15 84454347 84454668 -1241086 + AluSx SINE Alu 9 312 0 1613 203 65 46 chr15 84454668 84454891 -1240863 - L1 LINE L1 -1566 4580 4363 2125 113 44 19 chr15 84454893 84455257 -1240497 + THE1C LTR MaLR 3 375 0 2491 168 15 50 chr15 84455259 84455328 -1240426 - L1 LINE L1 -1780 4366 4296 1902 189 0 0 chr15 84455328 84455624 -1240130 - AluJb SINE Alu -16 296 1 2491 168 15 50 chr15 84455624 84455693 -1240061 - L1 LINE L1 -1850 4296 4226 276 30 0 0 chr15 84455693 84455726 -1240028 + (TG)n Simple_repeat Simple_repeat 2 34 0 2491 168 15 50 chr15 84455726 84456183 -1239571 - L1 LINE L1 -1920 4226 3791 255 114 0 0 chr15 84456362 84456406 -1239348 + (GA)n Simple_repeat Simple_repeat 1 44 0 252 0 0 0 chr15 84456434 84456462 -1239292 + (GA)n Simple_repeat Simple_repeat 1 28 0 206 32 32 0 chr15 84456570 84456601 -1239153 + (GA)n Simple_repeat Simple_repeat 1 32 0 446 261 125 23 chr15 84456741 84456917 -1238837 - MIR SINE MIR -48 214 21 1538 215 233 30 chr15 84457736 84457800 -1237954 + L1ME1 LINE L1 4471 4521 -1625 2173 112 27 0 chr15 84457800 84458094 -1237660 - AluSp SINE Alu -11 302 1 1538 215 233 30 chr15 84458094 84458442 -1237312 + L1ME1 LINE L1 4521 4797 -1349 2727 75 11 0 chr15 84458442 84458802 -1236952 + THE1B LTR MaLR 1 364 0 1538 215 233 30 chr15 84458802 84459082 -1236672 + L1ME1 LINE L1 4797 5305 -841 718 75 11 0 chr15 84459084 84459178 -1236576 - AluY SINE Alu -12 299 205 2275 257 97 10 chr15 84459179 84459962 -1235792 + L1ME1 LINE L1 5301 6151 -15 409 245 39 0 chr15 84460249 84460351 -1235403 + MER5A DNA MER1_type 4 109 -80 1581 212 87 60 chr15 84462724 84463172 -1232582 + LTR40b LTR ERVL 3 462 0 273 281 21 0 chr15 84463352 84463448 -1232306 - MER5A DNA MER1_type -83 106 9 2095 101 30 0 chr15 84463528 84463824 -1231930 + AluSp SINE Alu 1 305 -8 1815 180 10 57 chr15 84464370 84464775 -1230979 + MLT1B LTR MaLR 1 386 -4 472 300 110 21 chr15 84464790 84465027 -1230727 - L3b LINE CR1 -123 1460 1203 207 0 0 0 chr15 84465517 84465540 -1230214 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 215 295 103 0 chr15 84465741 84465819 -1229935 + MER5B DNA MER1_type 9 94 -84 652 149 9 9 chr15 84466309 84466416 -1229338 + MLT1B LTR MaLR 222 328 -62 1712 190 116 52 chr15 84466439 84466691 -1229063 - MER82 DNA MER2_type -221 432 198 2000 122 0 0 chr15 84466691 84466977 -1228777 + AluSx SINE Alu 1 286 -26 372 22 0 0 chr15 84466977 84467022 -1228732 + (CA)n Simple_repeat Simple_repeat 2 46 0 1712 190 116 52 chr15 84467022 84467174 -1228580 - MER82 DNA MER2_type -454 199 1 215 359 13 0 chr15 84467411 84467489 -1228265 + MIR3 SINE MIR 129 207 -1 2899 147 36 32 chr15 84468096 84468486 -1227268 + LTR26B LTR ERV1 1 395 -136 1278 164 285 14 chr15 84468486 84468840 -1226914 - LTR7 LTR ERV1 0 450 1 2899 147 36 32 chr15 84468840 84468978 -1226776 + LTR26B LTR ERV1 395 531 0 255 237 0 34 chr15 84469468 84469527 -1226227 + MIR SINE MIR 170 226 -36 769 161 8 8 chr15 84469619 84469743 -1226011 + FLAM_C SINE Alu 2 125 -18 222 136 0 0 chr15 84470851 84470895 -1224859 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4562 167 47 8 chr15 84471585 84472429 -1223325 + MER4D LTR ERV1 1 877 -26 302 237 65 79 chr15 84472986 84473125 -1222629 + L1MC4a LINE L1 5868 6004 -1804 2163 163 70 34 chr15 84473194 84473637 -1222117 + LTR2B LTR ERV1 32 490 0 258 308 71 69 chr15 84474068 84474241 -1221513 - MIR SINE MIR -64 198 21 21 0 0 0 chr15 84475530 84475551 -1220203 + AT_rich Low_complexity Low_complexity 1 21 0 527 247 62 75 chr15 84475556 84475994 -1219760 - L1MC5 LINE L1 -53 7908 7477 383 322 70 26 chr15 84477031 84477261 -1218493 - L3 LINE CR1 -869 708 469 1241 211 31 20 chr15 84477263 84477646 -1218108 - L1M3b LINE L1 -4603 1678 1284 1938 119 0 7 chr15 84477653 84477948 -1217806 + AluSg1 SINE Alu 14 306 -3 387 0 0 0 chr15 84477954 84477997 -1217757 + (CA)n Simple_repeat Simple_repeat 2 44 0 926 249 133 72 chr15 84478077 84478442 -1217312 + LTR1B LTR ERV1 56 464 -362 2123 106 3 3 chr15 84478442 84478744 -1217010 - AluSx SINE Alu -10 302 1 926 249 133 72 chr15 84478744 84478905 -1216849 + LTR1B LTR ERV1 464 614 -212 277 242 172 20 chr15 84478985 84479084 -1216670 + LTR28 LTR ERV1 900 1013 -7 1598 170 7 0 chr15 84479091 84479367 -1216387 + AluJb SINE Alu 31 308 -4 198 103 0 0 chr15 84480424 84480453 -1215301 + (CAGG)n Simple_repeat Simple_repeat 3 31 0 283 108 60 5 chr15 84480496 84480554 -1215200 - MLT2B1 LTR ERVL 0 554 462 358 147 35 35 chr15 84480556 84480672 -1215082 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 1369 253 108 7 chr15 84480716 84481171 -1214583 - MLT2B1 LTR ERVL -19 501 1 526 208 23 62 chr15 84481529 84481659 -1214095 - FLAM_C SINE Alu -16 127 3 3395 169 120 2 chr15 84481904 84482536 -1213218 - LTR12 LTR ERV1 -7 707 1 1465 158 12 15 chr15 84483823 84484082 -1211672 + MER2 DNA MER2_type 86 343 -2 21 0 0 0 chr15 84484945 84484966 -1210788 + AT_rich Low_complexity Low_complexity 1 21 0 1221 166 104 68 chr15 84485632 84485910 -1209844 + AluJo SINE Alu 1 288 -24 1679 162 0 17 chr15 84485921 84486247 -1209507 + AluJb SINE Alu 1 321 0 351 0 0 0 chr15 84486280 84486319 -1209435 + (CA)n Simple_repeat Simple_repeat 2 40 0 350 344 56 28 chr15 84486461 84486641 -1209113 - MIR3 SINE MIR -12 196 12 425 309 67 26 chr15 84486782 84486976 -1208778 + MIR3 SINE MIR 6 207 -1 513 316 124 9 chr15 84487292 84487615 -1208139 + L1MEc LINE L1 70 429 -5967 1962 89 33 0 chr15 84487678 84487798 -1207956 + AluSc SINE Alu 1 116 -203 392 0 21 0 chr15 84487798 84487846 -1207908 + (CA)n Simple_repeat Simple_repeat 2 50 0 1962 89 33 0 chr15 84487846 84488035 -1207719 + AluSc SINE Alu 116 319 0 815 259 45 0 chr15 84488172 84488373 -1207381 + MER20 DNA MER1_type 1 210 -9 961 158 7 0 chr15 84488436 84488588 -1207166 + FRAM SINE Alu 1 153 -23 376 172 62 14 chr15 84488588 84488733 -1207021 + (TA)n Simple_repeat Simple_repeat 1 152 0 1994 68 0 0 chr15 84488791 84489042 -1206712 + AluY SINE Alu 45 295 -16 521 186 20 0 chr15 84490386 84490488 -1205266 - MER53 DNA DNA -85 104 1 180 311 40 14 chr15 84490936 84491010 -1204744 - MIR SINE MIR -70 192 117 1728 146 3 20 chr15 84491455 84491750 -1204004 + AluJb SINE Alu 1 290 -22 3119 185 42 5 chr15 84492076 84492720 -1203034 - L1MB7 LINE L1 0 6184 5517 1998 148 0 10 chr15 84492750 84493061 -1202693 + AluSq SINE Alu 1 308 -5 2198 142 60 53 chr15 84493181 84493226 -1202528 - MSTA LTR MaLR 0 428 385 2126 103 0 13 chr15 84493226 84493527 -1202227 + AluSc SINE Alu 1 297 -12 2198 142 60 53 chr15 84493527 84493897 -1201857 - MSTA LTR MaLR -43 385 10 479 281 96 0 chr15 84493957 84494135 -1201619 + MLT1I LTR MaLR 3 197 -212 1170 127 6 0 chr15 84494135 84494308 -1201446 - AluSg/x SINE Alu -15 295 122 522 309 59 0 chr15 84494308 84494512 -1201242 + MLT1I LTR MaLR 194 409 0 417 309 112 27 chr15 84494892 84495115 -1200639 - L2 LINE L2 -155 3117 2876 375 347 60 69 chr15 84495265 84495714 -1200040 - L2 LINE L2 -592 2722 2278 3598 164 20 41 chr15 84496363 84497068 -1198686 + LTR8 LTR ERV1 2 691 0 317 155 35 0 chr15 84497239 84497297 -1198457 - HERV16 LTR ERVL -3086 1910 1851 222 118 0 0 chr15 84497399 84497433 -1198321 + (TAGG)n Simple_repeat Simple_repeat 2 35 0 181 185 56 0 chr15 84497634 84497688 -1198066 + (TATG)n Simple_repeat Simple_repeat 4 60 0 363 115 49 41 chr15 84498029 84498279 -1197475 + (TG)n Simple_repeat Simple_repeat 1 252 0 399 140 47 23 chr15 84498310 84498481 -1197273 + (TG)n Simple_repeat Simple_repeat 1 175 0 270 178 70 4 chr15 84498507 84498759 -1196995 + (TG)n Simple_repeat Simple_repeat 1 268 0 753 206 22 11 chr15 84499069 84499253 -1196501 - MER53 DNA DNA 0 189 4 21 0 0 0 chr15 84499498 84499519 -1196235 + AT_rich Low_complexity Low_complexity 1 21 0 330 216 134 8 chr15 84500064 84500198 -1195556 + L1ME4a LINE L1 5968 6118 -3 544 344 35 53 chr15 84500676 84501051 -1194703 + L1M3d LINE L1 241 608 -5523 1499 234 25 50 chr15 84501214 84501431 -1194323 + L1M3d LINE L1 918 1139 -5002 1894 98 69 0 chr15 84501431 84501705 -1194049 + AluY SINE Alu 1 293 -18 1499 234 25 50 chr15 84501705 84501891 -1193863 + L1M3d LINE L1 1139 1310 -4831 1884 93 23 0 chr15 84501891 84502149 -1193605 + AluSc SINE Alu 32 295 -14 1499 234 25 50 chr15 84502149 84502228 -1193526 + L1M3d LINE L1 1310 1389 -4752 * 4918 142 22 2 chr15 84502203 84503354 -1192400 + L1MA3 LINE L1 4871 6045 -324 824 163 7 20 chr15 84503354 84503507 -1192247 + AluJo SINE Alu 1 151 -161 3073 174 14 0 chr15 84503543 84504260 -1191494 + L1MB2 LINE L1 5051 5780 -391 1371 174 11 43 chr15 84504260 84504542 -1191212 + AluJo SINE Alu 1 273 -39 225 0 0 0 chr15 84504547 84504572 -1191182 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1825 170 17 47 chr15 84504572 84504978 -1190776 + L1MB2 LINE L1 5778 6171 0 1501 231 85 38 chr15 84505507 84505953 -1189801 - MLT1D LTR MaLR 0 505 39 1201 108 0 0 chr15 84505960 84506127 -1189627 - L1PA16 LINE L1 -229 5937 5771 1771 176 143 38 chr15 84506127 84506548 -1189206 - MLT2B1 LTR ERVL -55 465 1 1064 191 3 95 chr15 84506549 84506642 -1189112 + AluJb SINE Alu 24 124 -188 1482 139 51 70 chr15 84506642 84506958 -1188796 - AluSp SINE Alu -3 310 1 1064 191 3 95 chr15 84506958 84507179 -1188575 + AluJb SINE Alu 124 309 -3 230 200 109 0 chr15 84507432 84507487 -1188267 - MIR SINE MIR -93 169 109 23 0 0 0 chr15 84508768 84508791 -1186963 + AT_rich Low_complexity Low_complexity 1 23 0 537 264 29 23 chr15 84509628 84509802 -1185952 - MER45A DNA AcHobo 0 178 4 713 34 0 0 chr15 84510318 84510406 -1185348 + AluY SINE Alu 216 303 -8 767 49 0 10 chr15 84510420 84510522 -1185232 + AluY SINE Alu 200 300 -11 432 244 76 67 chr15 84510881 84511119 -1184635 + pTR5 LTR ERV1 761 1000 -1438 3206 166 46 58 chr15 84511329 84512024 -1183730 + LTR12 LTR ERV1 1 687 -1 489 226 36 68 chr15 84513120 84513341 -1182413 - LTR37B LTR ERV1 -13 455 242 810 183 131 102 chr15 84513557 84513901 -1181853 + MLT1E2 LTR MaLR 63 416 -210 418 237 67 87 chr15 84514078 84514220 -1181534 + MER112 DNA MER1_type 3 139 -121 1792 183 20 30 chr15 84514220 84514614 -1181140 + MLT1B LTR MaLR 1 390 0 418 237 67 87 chr15 84514614 84514724 -1181030 + MER112 DNA MER1_type 139 250 -10 1335 168 76 42 chr15 84515177 84515439 -1180315 + AluJb SINE Alu 1 271 -41 312 232 40 20 chr15 84516056 84516155 -1179599 - MER5A DNA MER1_type -80 109 9 27 0 0 0 chr15 84516818 84516845 -1178909 + AT_rich Low_complexity Low_complexity 1 27 0 2606 58 0 0 chr15 84516858 84517169 -1178585 - AluY SINE Alu 0 311 1 1507 223 103 5 chr15 84517269 84517668 -1178086 + L1MB2 LINE L1 5692 6129 -42 401 186 52 52 chr15 84517668 84517765 -1177989 + AluJb SINE Alu 32 128 -174 917 197 17 6 chr15 84517874 84518052 -1177702 + AluJb SINE Alu 111 290 -22 306 105 0 0 chr15 84518054 84518111 -1177643 + L1MB3 LINE L1 6127 6183 0 1462 175 18 103 chr15 84518436 84518835 -1176919 - MLT1A1 LTR MaLR 0 365 1 611 67 11 0 chr15 84519044 84519133 -1176621 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 1901 144 0 7 chr15 84519888 84520295 -1175459 - AluSx SINE Alu 0 405 1 1347 65 0 38 chr15 84520675 84520859 -1174895 - AluY SINE Alu -6 305 129 2046 124 47 0 chr15 84521072 84521370 -1174384 + AluSx SINE Alu 1 312 0 216 208 21 0 chr15 84521815 84521863 -1173891 + CT-rich Low_complexity Low_complexity 1 49 0 318 189 27 14 chr15 84523583 84523657 -1172097 - MIR SINE MIR -3 259 185 759 159 164 80 chr15 84523676 84523877 -1171877 - MER20 DNA MER1_type -1 218 1 2721 263 25 22 chr15 84524057 84525313 -1170441 + L1M3c LINE L1 2 1625 -4516 3535 245 36 28 chr15 84525322 84526519 -1169235 + L1MA4 LINE L1 2420 3629 -3936 2251 113 3 0 chr15 84526519 84526821 -1168933 + AluSg SINE Alu 1 303 -7 3535 245 36 28 chr15 84526821 84526865 -1168889 + L1MA4 LINE L1 3629 3671 -3894 372 145 53 0 chr15 84526860 84526936 -1168818 + L1MA4 LINE L1 4379 4458 -3107 * 527 173 39 13 chr15 84527432 84527588 -1168166 + L1MA4 LINE L1 4447 4606 -2959 847 221 94 53 chr15 84527613 84528006 -1167748 - LTR56 LTR ERV1 -10 435 27 3611 185 51 31 chr15 84528066 84529362 -1166392 - LTR56-int LTR ERV1 -101 6005 4505 1679 163 7 24 chr15 84529362 84529687 -1166067 - AluJb SINE Alu 0 312 1 3611 185 51 31 chr15 84529687 84529784 -1165970 - LTR56-int LTR ERV1 -1601 4505 4411 529 170 88 0 chr15 84529794 84529902 -1165852 - LTR49-int LTR ERV1 -5058 1205 1 808 201 91 0 chr15 84530070 84530224 -1165530 - MER21B LTR ERV1 -367 496 329 8638 150 20 31 chr15 84530236 84531252 -1164502 + L1MA4 LINE L1 4620 5646 -2073 9168 167 26 30 chr15 84531252 84531488 -1164266 + L1PA13 LINE L1 3703 3938 -2225 2304 93 0 3 chr15 84531488 84531779 -1163975 + AluY SINE Alu 3 292 -19 9168 167 26 30 chr15 84531779 84533891 -1161863 + L1PA13 LINE L1 3938 6051 -112 3330 114 8 29 chr15 84533891 84534409 -1161345 + MER9 LTR ERVK 1 507 -4 9168 167 26 30 chr15 84534409 84534522 -1161232 + L1PA13 LINE L1 6051 6163 0 8638 150 20 31 chr15 84534522 84534986 -1160768 + L1MA4 LINE L1 5646 6114 -1605 1675 171 7 10 chr15 84534986 84535278 -1160476 - AluJb SINE Alu -21 291 1 8638 150 20 31 chr15 84535278 84535803 -1159951 + L1MA4 LINE L1 6114 6643 -1076 1846 175 3 20 chr15 84535803 84536106 -1159648 + AluJb SINE Alu 5 302 -10 8638 150 20 31 chr15 84536106 84536995 -1158759 + L1MA4 LINE L1 6643 7540 -179 1716 157 3 55 chr15 84536995 84537307 -1158447 + AluJo SINE Alu 3 298 -14 8638 150 20 31 chr15 84537307 84537414 -1158340 + L1MA4 LINE L1 7540 7522 -197 2234 100 0 3 chr15 84537414 84537705 -1158049 - AluSc SINE Alu -19 290 1 8638 150 20 31 chr15 84537705 84537902 -1157852 + L1MA4 LINE L1 7521 7719 0 922 211 14 21 chr15 84537881 84538165 -1157589 + L1 LINE L1 4308 4589 -2976 * 2161 111 3 3 chr15 84539244 84539533 -1156221 + AluSq SINE Alu 5 293 -20 2092 76 0 0 chr15 84540403 84540652 -1155102 + AluY SINE Alu 1 249 -62 2786 192 92 37 chr15 84540862 84541561 -1154193 - Tigger6a DNA MER2_type -2 1081 345 258 349 0 0 chr15 84541561 84541667 -1154087 - L1MEd LINE L1 -1257 4872 4767 223 280 70 30 chr15 84541700 84541800 -1153954 + MIR SINE MIR 36 139 -69 2065 100 10 17 chr15 84541883 84542270 -1153484 + AluSp SINE Alu 3 387 0 1676 172 7 10 chr15 84543379 84543669 -1152085 + AluJo SINE Alu 5 293 -19 2200 95 3 10 chr15 84543727 84544031 -1151723 + AluSq SINE Alu 1 302 -11 677 320 104 19 chr15 84544222 84544760 -1150994 - L1ME3A LINE L1 -213 5957 5374 2357 108 0 0 chr15 84544792 84545098 -1150656 - AluSx SINE Alu -6 306 1 314 44 0 22 chr15 84545347 84545392 -1150362 + (TG)n Simple_repeat Simple_repeat 2 45 0 1552 199 7 3 chr15 84545776 84546063 -1149691 + AluJo SINE Alu 12 299 -13 618 271 88 35 chr15 84546065 84546405 -1149349 - L1MEd LINE L1 -1508 4621 4264 281 298 92 33 chr15 84546412 84546684 -1149070 - L1MEd LINE L1 -1938 4191 3904 396 341 79 40 chr15 84546745 84546924 -1148830 - L1MEd LINE L1 -2439 3690 3520 2236 100 38 0 chr15 84546924 84547213 -1148541 - AluSx SINE Alu -8 304 5 396 341 79 40 chr15 84547213 84547438 -1148316 - L1MEd LINE L1 -2609 3520 3270 1273 201 10 55 chr15 84547698 84548007 -1147747 - AluJb SINE Alu -9 303 9 1362 266 68 30 chr15 84548061 84548078 -1147676 - L1MEd LINE L1 -2953 3176 3161 1924 175 0 9 chr15 84548078 84548393 -1147361 - AluSx SINE Alu 0 312 1 1362 266 68 30 chr15 84548393 84549182 -1146572 - L1MEd LINE L1 -2968 3161 2334 1964 121 50 0 chr15 84549182 84549462 -1146292 - AluSx SINE Alu -8 304 11 1362 266 68 30 chr15 84549462 84549494 -1146260 - L1MEd LINE L1 -3795 2334 2305 290 214 0 57 chr15 84549513 84549583 -1146171 + MIR SINE MIR 111 176 -86 354 330 70 0 chr15 84549597 84549712 -1146042 - L2 LINE L2 -1 3312 3190 282 247 54 43 chr15 84549714 84549807 -1145947 + MIR SINE MIR 169 262 0 1736 169 6 47 chr15 84549968 84550288 -1145466 - AluSx SINE Alu -5 307 1 1041 237 114 17 chr15 84550455 84550931 -1144823 - MLT1G LTR MaLR -3 587 10 288 262 0 0 chr15 84550925 84550986 -1144768 - MLT1G1 LTR MaLR -534 61 1 * 23 33 0 0 chr15 84551161 84551191 -1144563 + AT_rich Low_complexity Low_complexity 1 30 0 737 274 139 51 chr15 84551369 84551862 -1143892 - L1MEd LINE L1 -4862 1257 694 2138 128 3 0 chr15 84551862 84552159 -1143595 - AluSg SINE Alu -12 298 1 737 274 139 51 chr15 84552159 84552449 -1143305 - L1MEd LINE L1 -5425 694 431 1203 244 98 9 chr15 84552901 84553216 -1142538 - MER2 DNA MER2_type 0 345 3 1847 136 14 4 chr15 84555121 84555400 -1140354 - AluSx SINE Alu -30 282 1 3496 152 113 21 chr15 84555882 84556512 -1139242 - LTR12 LTR ERV1 0 688 1 195 269 0 0 chr15 84556617 84556669 -1139085 - L2 LINE L2 -26 3246 3195 1842 188 60 130 chr15 84556898 84557138 -1138616 + MER70B LTR ERVL 5 260 -318 3125 86 19 9 chr15 84557138 84557568 -1138186 - MER57B LTR ERV1 0 434 1 1842 188 60 130 chr15 84557568 84557944 -1137810 + MER70B LTR ERVL 260 578 0 1777 226 20 18 chr15 84558433 84558827 -1136927 - MSTD LTR MaLR -1 395 1 206 333 44 0 chr15 84559399 84559534 -1136220 - L2 LINE L2 -222 3050 2910 2026 125 0 0 chr15 84559600 84559880 -1135874 + AluSx SINE Alu 1 280 -32 217 0 61 0 chr15 84559881 84559914 -1135840 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1134 197 4 37 chr15 84560465 84560709 -1135045 - LTR51 LTR ERV1 0 671 436 292 159 0 57 chr15 84560724 84560812 -1134942 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 2217 111 69 62 chr15 84560812 84560995 -1134759 - LTR51 LTR ERV1 -232 439 259 2491 76 3 0 chr15 84560995 84561299 -1134455 + AluY SINE Alu 1 305 -6 2217 111 69 62 chr15 84561299 84561471 -1134283 - LTR51 LTR ERV1 -412 259 78 2086 83 22 70 chr15 84561471 84561784 -1133970 - AluY SINE Alu -13 298 1 2217 111 69 62 chr15 84561784 84561833 -1133921 - LTR51 LTR ERV1 -593 78 31 1656 221 113 82 chr15 84561830 84562337 -1133417 - LTR8 LTR ERV1 -232 461 1 * 2344 183 38 20 chr15 84562359 84562808 -1132946 - LTR32 LTR ERVL 0 471 15 2391 104 10 0 chr15 84563206 84563514 -1132240 - AluSx SINE Alu -1 311 1 421 229 52 100 chr15 84563910 84564126 -1131628 + MER34C LTR ERV1 47 253 -332 4006 96 5 25 chr15 84564126 84564514 -1131240 - MER41A LTR ERV1 0 554 178 2136 95 0 11 chr15 84564514 84564828 -1130926 - AluY SINE Alu 0 311 1 4006 96 5 25 chr15 84564828 84565003 -1130751 - MER41A LTR ERV1 -376 178 1 242 196 37 93 chr15 84565003 84565073 -1130681 + LTR48 LTR ERV1 386 450 -337 421 229 52 100 chr15 84565003 84565017 -1130737 + MER34C LTR ERV1 253 266 -319 3207 188 21 65 chr15 84565073 84565796 -1129958 - LTR8 LTR ERV1 0 691 1 242 196 37 93 chr15 84565796 84565832 -1129922 + LTR48 LTR ERV1 450 486 -301 338 256 54 14 chr15 84565860 84566044 -1129710 + MER34 LTR ERV1 447 539 -3 572 230 7 7 chr15 84566146 84566281 -1129473 - FAM SINE Alu -50 135 1 2399 91 0 19 chr15 84566298 84566616 -1129138 - AluSq SINE Alu 0 313 2 2269 195 5 88 chr15 84567553 84567565 -1128189 + L1MA10 LINE L1 5782 5793 -541 291 54 0 0 chr15 84567565 84567602 -1128152 + (TG)n Simple_repeat Simple_repeat 1 37 0 2269 195 5 88 chr15 84567602 84567957 -1127797 + L1MA10 LINE L1 5793 6082 -252 1743 181 3 3 chr15 84567957 84568256 -1127498 + AluJb SINE Alu 1 299 -13 2269 195 5 88 chr15 84568256 84568487 -1127267 + L1MA10 LINE L1 6082 6331 -3 271 307 187 24 chr15 84568718 84568884 -1126870 + L3 LINE CR1 1034 1226 -351 308 282 24 0 chr15 84569134 84569219 -1126535 + L3 LINE CR1 1054 1140 -437 1499 103 0 0 chr15 84569370 84569565 -1126189 + AluSc SINE Alu 1 195 -114 317 89 0 0 chr15 84569565 84569610 -1126144 + AluSc SINE Alu 254 298 -1 21 0 0 0 chr15 84569643 84569664 -1126090 + AT_rich Low_complexity Low_complexity 1 21 0 324 275 25 8 chr15 84569728 84569848 -1125906 - Tigger8 DNA MER2_type -117 549 428 492 247 95 6 chr15 84569928 84570086 -1125668 - Tigger8 DNA MER2_type -368 298 127 465 272 83 38 chr15 84570244 84570557 -1125197 - L1ME4a LINE L1 -263 5858 5532 1302 101 37 5 chr15 84570591 84570779 -1124975 - AluSg/x SINE Alu -7 305 112 822 104 0 52 chr15 84571281 84571416 -1124338 - FLAM_C SINE Alu -11 132 5 443 245 29 0 chr15 84571426 84571565 -1124189 - MER5A DNA MER1_type 0 189 47 1474 286 169 10 chr15 84572060 84572945 -1122809 + Charlie2a DNA MER1_type 529 1554 -1308 701 211 116 12 chr15 84572945 84573366 -1122388 + Charlie2a DNA MER1_type 2110 2675 -187 186 103 0 0 chr15 84573427 84573456 -1122298 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 237 191 0 chr15 84573464 84573595 -1122159 + Charlie2a DNA MER1_type 1912 2067 -795 281 240 41 16 chr15 84573602 84573723 -1122031 + (TA)n Simple_repeat Simple_repeat 1 124 0 194 128 26 0 chr15 84573739 84573778 -1121976 + (TA)n Simple_repeat Simple_repeat 1 40 0 550 258 26 0 chr15 84573781 84573936 -1121818 + Charlie2a DNA MER1_type 2703 2861 -1 2470 216 93 48 chr15 84574216 84574446 -1121308 - Charlie2 DNA MER1_type -7 2855 2637 1661 192 0 7 chr15 84574446 84574743 -1121011 + AluJo SINE Alu 1 295 -17 2470 216 93 48 chr15 84574743 84575329 -1120425 - Charlie2 DNA MER1_type -225 2637 1987 1860 158 18 0 chr15 84575329 84575613 -1120141 - AluJo SINE Alu -23 289 1 2470 216 93 48 chr15 84575613 84575751 -1120003 - Charlie2 DNA MER1_type -875 1987 1857 21 36 0 0 chr15 84576122 84576150 -1119604 + AT_rich Low_complexity Low_complexity 1 28 0 763 173 0 23 chr15 84576529 84576662 -1119092 + FLAM_A SINE Alu 1 130 -3 1883 200 68 8 chr15 84577333 84577844 -1117910 + MER67A LTR ERV1 2 543 0 994 243 47 7 chr15 84578846 84579141 -1116613 - MLT1E1 LTR MaLR 0 654 312 613 212 23 0 chr15 84579173 84579305 -1116449 + FLAM_C SINE Alu 9 143 0 1170 190 190 0 chr15 84579306 84579601 -1116153 - MLT1E1 LTR MaLR -303 351 1 287 49 24 0 chr15 84580686 84580727 -1115027 + (TG)n Simple_repeat Simple_repeat 2 43 0 3888 141 59 1 chr15 84580732 84581394 -1114360 - Tigger3b DNA MER2_type 0 1231 532 1395 176 0 0 chr15 84581394 84581604 -1114150 + AluJb SINE Alu 1 210 -102 1588 143 0 4 chr15 84581709 84581946 -1113808 + AluJb SINE Alu 65 300 -12 800 136 8 0 chr15 84581948 84582066 -1113688 - Tigger3b DNA MER2_type -693 539 421 361 123 18 0 chr15 84582071 84582128 -1113626 + AluJ/FRAM SINE Alu 229 286 -16 22 0 0 0 chr15 84582129 84582151 -1113603 + AT_rich Low_complexity Low_complexity 1 22 0 1989 154 59 31 chr15 84582151 84582540 -1113214 - Tigger3b DNA MER2_type -830 401 2 392 141 0 35 chr15 84582551 84582636 -1113118 + (TA)n Simple_repeat Simple_repeat 1 82 0 194 302 32 0 chr15 84583444 84583507 -1112247 - MER5A DNA MER1_type -52 137 73 276 316 137 5 chr15 84583582 84583772 -1111982 + MIR SINE MIR 46 260 -2 658 208 8 8 chr15 84584020 84584150 -1111604 - AluJo SINE Alu -178 134 5 276 130 0 0 chr15 84584467 84584513 -1111241 + (T)n Simple_repeat Simple_repeat 1 46 0 270 218 0 18 chr15 84584513 84584568 -1111186 - MER31A LTR ERV1 -84 401 348 1949 230 6 10 chr15 84585939 84586424 -1109330 + L1MC4a LINE L1 3763 4317 -1829 665 172 0 0 chr15 84589381 84589497 -1106257 + FLAM_C SINE Alu 1 116 -17 22 0 0 0 chr15 84589497 84589519 -1106235 + AT_rich Low_complexity Low_complexity 1 22 0 933 255 150 39 chr15 84589717 84590204 -1105550 + L1MC4a LINE L1 5287 5827 -1981 3521 177 18 9 chr15 84590837 84591504 -1104250 + L1MC1 LINE L1 5660 6332 -1 2419 72 0 0 chr15 84591888 84592180 -1103574 + AluY SINE Alu 1 292 -19 1333 188 16 38 chr15 84592409 84592728 -1103026 + AluJo SINE Alu 1 312 0 299 328 58 43 chr15 84592991 84593317 -1102437 + L1MC/D LINE L1 5435 5765 -2043 1646 176 7 17 chr15 84593767 84594057 -1101697 + AluJo SINE Alu 1 287 -25 317 110 49 24 chr15 84594057 84594139 -1101615 + GA-rich Low_complexity Low_complexity 1 84 0 1587 219 28 14 chr15 84595220 84595311 -1100443 + MER47A DNA MER2_type 3 91 -2232 1357 161 142 11 chr15 84595311 84595578 -1100176 + AluJb SINE Alu 1 302 0 1587 219 28 14 chr15 84595578 84595889 -1099865 + MER47A DNA MER2_type 91 366 0 282 56 0 0 chr15 84595889 84595925 -1099829 + (TTA)n Simple_repeat Simple_repeat 3 38 0 507 283 26 71 chr15 84595980 84596206 -1099548 - L2 LINE L2 0 3313 3098 1681 162 10 24 chr15 84596251 84596541 -1099213 + AluJo SINE Alu 26 311 -1 324 263 107 39 chr15 84597342 84597523 -1098231 - L1ME3A LINE L1 0 6170 5976 2225 217 53 31 chr15 84597535 84598047 -1097707 - L1ME2 LINE L1 -75 6325 5795 3082 145 10 2 chr15 84598047 84598529 -1097225 - MER66B LTR ERV1 0 486 1 2225 217 53 31 chr15 84598529 84598651 -1097103 - L1ME2 LINE L1 -605 5795 5677 374 261 57 78 chr15 84598649 84598694 -1097060 - L1ME2 LINE L1 -2613 3769 3725 * 1706 183 0 37 chr15 84598694 84599017 -1096737 - AluJb SINE Alu -1 311 1 374 261 57 78 chr15 84599017 84599201 -1096553 - L1ME2 LINE L1 -2657 3725 3545 862 293 103 28 chr15 84599234 84600083 -1095671 - L1ME2 LINE L1 -4451 2112 1005 2368 109 0 0 chr15 84600275 84600578 -1095176 - AluSx SINE Alu -9 303 1 541 314 29 77 chr15 84600794 84601118 -1094636 - L1ME2 LINE L1 -5963 600 299 1589 183 24 10 chr15 84601118 84601408 -1094346 + AluJo SINE Alu 1 294 -18 541 314 29 77 chr15 84601408 84601500 -1094254 - L1ME2 LINE L1 -6264 299 204 1049 115 26 19 chr15 84602002 84602158 -1093596 + AluSg/x SINE Alu 154 310 0 198 0 0 0 chr15 84602196 84602218 -1093536 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4029 77 0 0 chr15 84602219 84602741 -1093013 - L1PA8 LINE L1 0 6172 5651 1796 132 13 56 chr15 84602892 84603195 -1092559 - AluJo SINE Alu -18 294 5 2516 69 0 0 chr15 84603663 84603966 -1091788 - AluY SINE Alu -8 303 1 2180 196 50 14 chr15 84605411 84605598 -1090156 + MLT1C LTR MaLR 4 183 -284 222 37 0 0 chr15 84605598 84605625 -1090129 + (CA)n Simple_repeat Simple_repeat 2 28 0 2180 196 50 14 chr15 84605625 84605877 -1089877 + MLT1C LTR MaLR 183 459 -8 623 196 0 0 chr15 84605957 84606069 -1089685 + AluJb SINE Alu 200 311 -1 61 37 0 0 chr15 84606233 84606315 -1089439 + AT_rich Low_complexity Low_complexity 1 82 0 2075 211 79 68 chr15 84606315 84606570 -1089184 - L1MD2 LINE L1 -148 6211 5960 2032 158 0 0 chr15 84606570 84606881 -1088873 + AluJb SINE Alu 1 311 -1 2075 211 79 68 chr15 84606881 84607247 -1088507 - L1MD2 LINE L1 -399 5960 5583 245 276 32 0 chr15 84607316 84607401 -1088353 - L1M4 LINE L1 -256 5922 5831 635 154 0 0 chr15 84607426 84607530 -1088224 + AluJb SINE Alu 201 304 -8 843 152 25 93 chr15 84607530 84607625 -1088129 + ERVL-B3 LTR ERVL 5378 5478 -176 746 167 0 23 chr15 84607625 84607757 -1087997 + AluJ SINE Alu 2 130 -172 843 152 25 93 chr15 84607757 84607824 -1087930 + ERVL-B3 LTR ERVL 5478 5548 -106 735 189 0 0 chr15 84607824 84607946 -1087808 + FLAM_C SINE Alu 1 122 -11 843 152 25 93 chr15 84607946 84608079 -1087675 + ERVL-B3 LTR ERVL 5548 5654 0 2552 157 7 176 chr15 84608079 84608186 -1087568 + MLT2B3 LTR ERVL 1 124 -430 1854 167 3 0 chr15 84608186 84608468 -1087286 - AluJo SINE Alu -25 287 5 2552 157 7 176 chr15 84608468 84608934 -1086820 + MLT2B3 LTR ERVL 124 516 -38 812 88 19 32 chr15 84608935 84609156 -1086598 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 903 100 17 17 chr15 84609204 84609384 -1086370 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 302 98 66 33 chr15 84609398 84609459 -1086295 + MLT2B1 LTR ERVL 458 520 0 1021 167 13 0 chr15 84609992 84610148 -1085606 + AluJ SINE Alu 133 290 -22 26 30 0 0 chr15 84610470 84610503 -1085251 + AT_rich Low_complexity Low_complexity 1 33 0 302 281 20 92 chr15 84610703 84610856 -1084898 - L2 LINE L2 -3 3310 3169 304 365 64 34 chr15 84611232 84611465 -1084289 - HAL1 LINE L1 -1430 1077 838 495 287 60 24 chr15 84611500 84611667 -1084087 - MER5B DNA MER1_type 0 178 6 2469 63 0 3 chr15 84611861 84612163 -1083591 - AluSg SINE Alu -3 307 7 25 0 0 0 chr15 84612443 84612468 -1083286 + AT_rich Low_complexity Low_complexity 1 25 0 2222 103 14 0 chr15 84612488 84612780 -1082974 - AluSp SINE Alu -17 296 1 535 144 11 11 chr15 84612968 84613058 -1082696 + AluJo SINE Alu 45 134 -178 2013 141 17 3 chr15 84613066 84613357 -1082397 - AluSx SINE Alu -17 295 1 37 0 0 0 chr15 84613357 84613394 -1082360 + AT_rich Low_complexity Low_complexity 1 37 0 184 375 23 11 chr15 84613529 84613617 -1082137 - MIR3 SINE MIR -8 200 112 * 208 343 68 42 chr15 84613560 84613796 -1081958 + L2 LINE L2 2083 2324 -990 222 295 208 49 chr15 84613823 84614250 -1081504 + L2 LINE L2 2467 2961 -353 774 278 176 9 chr15 84614298 84614809 -1080945 + L2 LINE L2 2452 3063 -250 365 311 274 14 chr15 84615016 84615312 -1080442 + L2 LINE L2 2894 3266 -6 22 0 0 0 chr15 84617461 84617483 -1078271 + GC_rich Low_complexity Low_complexity 1 22 0 242 169 42 28 chr15 84617528 84617599 -1078155 + (GGCTG)n Simple_repeat Simple_repeat 5 76 0 1897 177 10 3 chr15 84618906 84619216 -1076538 + AluJb SINE Alu 1 312 0 4734 157 39 4 chr15 84620004 84621101 -1074653 + L1PB4 LINE L1 5016 6149 -7 471 313 75 58 chr15 84621144 84621610 -1074144 + L1ME LINE L1 4217 4690 -1456 409 304 138 38 chr15 84621839 84622158 -1073596 + L1ME LINE L1 5009 5359 -787 1641 181 36 10 chr15 84622163 84622467 -1073287 + AluJo SINE Alu 1 312 0 265 256 105 0 chr15 84622759 84622845 -1072909 + L1ME LINE L1 5805 5899 -222 1586 193 18 12 chr15 84623005 84623332 -1072422 - L1MB3 LINE L1 -193 5990 5662 336 24 0 0 chr15 84623801 84623842 -1071912 + (CA)n Simple_repeat Simple_repeat 2 42 0 372 133 0 0 chr15 84626114 84626174 -1069580 + (TG)n Simple_repeat Simple_repeat 2 61 0 404 239 83 56 chr15 84626482 84626662 -1069092 + LTR41 LTR ERVL 468 652 -121 1377 197 21 45 chr15 84626678 84626967 -1068787 - AluJo SINE Alu -30 282 1 265 0 0 25 chr15 84627009 84627049 -1068705 - L1MB7 LINE L1 0 6184 6146 311 219 59 3 chr15 84627049 84627155 -1068599 + LTR50 LTR ERVL 665 794 -1 2351 131 54 28 chr15 84629066 84629257 -1066497 + Tigger2 DNA MER2_type 2280 2465 -253 2550 63 0 0 chr15 84629257 84629556 -1066198 - AluY SINE Alu -12 299 1 2351 131 54 28 chr15 84629556 84629792 -1065962 + Tigger2 DNA MER2_type 2465 2718 0 410 105 18 0 chr15 84630466 84630523 -1065231 + Alu SINE Alu 2 59 -254 381 231 90 30 chr15 84631266 84631400 -1064354 - MIR SINE MIR -74 188 47 347 252 206 13 chr15 84631439 84631594 -1064160 - MER5A DNA MER1_type -2 187 3 250 250 250 0 chr15 84631901 84631977 -1063777 - MIR SINE MIR -50 212 118 203 262 0 0 chr15 84632998 84633040 -1062714 + MER5A DNA MER1_type 40 81 -108 1482 173 0 12 chr15 84633867 84634115 -1061639 - AluJo SINE Alu -67 245 1 1510 219 54 74 chr15 84634115 84634492 -1061262 - L1MC5 LINE L1 -308 7653 7291 240 35 0 0 chr15 84634492 84634521 -1061233 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1510 219 54 74 chr15 84634521 84634768 -1060986 - L1MC5 LINE L1 -670 7291 7041 2069 104 73 25 chr15 84634797 84635153 -1060601 - THE1C LTR MaLR -2 373 1 700 203 57 28 chr15 84635166 84635378 -1060376 - L1MD3 LINE L1 0 7995 7778 3017 227 28 72 chr15 84635399 84635698 -1060056 - L1M4 LINE L1 -1825 4321 4010 312 27 0 0 chr15 84635698 84635735 -1060019 + (TG)n Simple_repeat Simple_repeat 2 38 0 3017 227 28 72 chr15 84635735 84636189 -1059565 - L1M4 LINE L1 -2136 4010 3626 2376 96 3 6 chr15 84636189 84636501 -1059253 - AluSq SINE Alu -2 311 1 3017 227 28 72 chr15 84636501 84636808 -1058946 - L1M4 LINE L1 -2520 3626 3307 527 239 110 57 chr15 84637058 84637359 -1058395 + L1MD2 LINE L1 1 317 -6223 2808 236 52 17 chr15 84637546 84639406 -1056348 + L1MD2 LINE L1 4391 6553 -2 1423 254 62 16 chr15 84639402 84639850 -1055904 + L1MD2 LINE L1 5881 6349 -10 * 1269 193 91 9 chr15 84642016 84642347 -1053407 - L1MA9 LINE L1 -258 6054 5697 765 169 26 56 chr15 84642362 84642557 -1053197 + L1MA9 LINE L1 6042 6230 -82 423 215 52 22 chr15 84642678 84642813 -1052941 - L1MD3 LINE L1 -1066 6929 6791 329 128 73 147 chr15 84642844 84642953 -1052801 - L1MC5 LINE L1 -1000 6961 6861 582 152 0 0 chr15 84642953 84643045 -1052709 - AluJ/FRAM SINE Alu -3 309 218 198 0 0 0 chr15 84643065 84643087 -1052667 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1174 229 63 12 chr15 84643914 84644246 -1051508 - LTR48B LTR ERV1 0 644 296 764 198 44 44 chr15 84644216 84644499 -1051255 - LTR48B LTR ERV1 -342 280 1 * 609 163 10 0 chr15 84645013 84645111 -1050643 - FLAM_C SINE Alu -16 127 29 21 0 0 0 chr15 84645537 84645558 -1050196 + AT_rich Low_complexity Low_complexity 1 21 0 2152 222 52 20 chr15 84647516 84648057 -1047697 + MER74A LTR ERVL 1 558 0 2058 86 0 36 chr15 84648208 84648488 -1047266 + AluY SINE Alu 38 307 -4 958 233 97 3 chr15 84649601 84649889 -1045865 - MLT1B LTR MaLR 0 390 76 2462 82 3 0 chr15 84650159 84650463 -1045291 - AluSg SINE Alu -5 305 1 1840 148 13 20 chr15 84651914 84652217 -1043537 - AluJo SINE Alu -10 302 2 31 58 0 0 chr15 84652632 84652684 -1043070 + AT_rich Low_complexity Low_complexity 1 52 0 1292 232 17 3 chr15 84652686 84652906 -1042848 - L1MB4 LINE L1 -26 6154 5935 619 249 92 10 chr15 84652906 84653160 -1042594 - L1ME2 LINE L1 -233 5931 5632 797 201 169 4 chr15 84653161 84653399 -1042355 - L1MB5 LINE L1 -36 6138 5874 2395 117 0 0 chr15 84653424 84653731 -1042023 - AluSg SINE Alu -3 307 1 256 267 19 29 chr15 84653757 84653862 -1041892 - L1MC5 LINE L1 -44 7917 7814 351 0 0 0 chr15 84655221 84655260 -1040494 + (TG)n Simple_repeat Simple_repeat 2 40 0 785 94 0 9 chr15 84655931 84656037 -1039717 + AluSq/x SINE Alu 3 107 -206 297 306 74 33 chr15 84656172 84656293 -1039461 - L2 LINE L2 -1 3312 3187 2327 92 3 7 chr15 84657672 84657975 -1037779 - AluSp SINE Alu -8 305 4 381 129 0 0 chr15 84658418 84658488 -1037266 + (TG)n Simple_repeat Simple_repeat 1 70 0 2220 149 72 29 chr15 84660101 84660219 -1035535 - LTR34 LTR ERV1 0 699 588 2321 91 3 10 chr15 84660219 84660517 -1035237 + AluSx SINE Alu 1 296 -16 2220 149 72 29 chr15 84660517 84660841 -1034913 - LTR34 LTR ERV1 -111 588 238 796 179 0 21 chr15 84660843 84660983 -1034771 - FLAM_C SINE Alu -6 137 1 417 157 0 0 chr15 84660989 84661059 -1034695 - LTR34 LTR ERV1 -463 236 167 2531 189 20 2 chr15 84661059 84661508 -1034246 - LTR32 LTR ERVL 0 471 15 587 228 82 0 chr15 84661508 84661666 -1034088 - LTR34 LTR ERV1 -528 171 1 268 323 82 25 chr15 84661760 84661918 -1033836 - MIR SINE MIR -69 193 27 1844 185 97 0 chr15 84662146 84662497 -1033257 - MLT1B LTR MaLR -5 385 1 2279 78 3 10 chr15 84662757 84663066 -1032688 - AluSg SINE Alu -3 307 1 1278 182 94 42 chr15 84663444 84663730 -1032024 + AluJb SINE Alu 3 303 -9 224 274 97 0 chr15 84664548 84664661 -1031093 - MER5B DNA MER1_type -1 177 54 363 323 41 19 chr15 84664679 84664866 -1030888 - MIR SINE MIR -59 149 3 24 0 0 0 chr15 84665348 84665372 -1030382 + AT_rich Low_complexity Low_complexity 1 24 0 291 234 170 50 chr15 84665872 84665975 -1029779 + MIR SINE MIR 25 151 -57 2542 99 29 0 chr15 84665975 84666320 -1029434 + THE1A LTR MaLR 1 355 0 291 234 170 50 chr15 84666320 84666357 -1029397 + MIR SINE MIR 151 182 -26 1681 183 22 36 chr15 84667551 84667907 -1027847 - MLT1A1 LTR MaLR 0 365 15 360 294 171 0 chr15 84668069 84668215 -1027539 + MER5A DNA MER1_type 19 189 0 331 169 99 0 chr15 84668694 84668765 -1026989 - MLT2B1 LTR ERVL -435 85 8 1088 119 0 40 chr15 84669120 84669296 -1026458 + AluSq SINE Alu 140 308 -5 2010 110 3 3 chr15 84669846 84670145 -1025609 - AluSp SINE Alu -14 299 1 3572 272 105 30 chr15 84674264 84675929 -1019825 + L1MEc LINE L1 15 1804 -4592 188 67 33 0 chr15 84677680 84677710 -1018044 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 744 153 0 0 chr15 84677714 84677825 -1017929 - FLAM_C SINE Alu -32 111 1 2248 110 0 0 chr15 84678536 84678844 -1016910 - AluSx SINE Alu -4 308 1 281 297 110 0 chr15 84679213 84679304 -1016450 + MIR SINE MIR 96 196 -66 533 94 106 12 chr15 84679444 84679529 -1016225 + HY4 scRNA scRNA 1 93 0 23 0 0 0 chr15 84679529 84679552 -1016202 + AT_rich Low_complexity Low_complexity 1 23 0 2016 175 54 26 chr15 84679877 84680340 -1015414 + L1 LINE L1 4456 4931 -1215 256 346 10 29 chr15 84680938 84681042 -1014712 + L2 LINE L2 3171 3272 0 1525 236 61 21 chr15 84681404 84681878 -1013876 + MLT1D LTR MaLR 6 498 -7 218 233 53 41 chr15 84682840 84682951 -1012803 - MIR SINE MIR -48 214 106 785 250 9 14 chr15 84684051 84684267 -1011487 - MER96B DNA MER1_type? -195 222 8 1040 142 21 16 chr15 84684572 84684762 -1010992 - AluJb SINE Alu -7 305 115 2353 144 64 0 chr15 84687040 84687464 -1008290 + L1MA7 LINE L1 5835 6285 -6 1439 143 135 12 chr15 84687914 84688173 -1007581 - AluJb SINE Alu -21 291 1 2372 117 90 12 chr15 84688197 84688598 -1007156 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr15 84689965 84689987 -1005767 + AT_rich Low_complexity Low_complexity 1 22 0 240 352 29 9 chr15 84690160 84690265 -1005489 + MIR3 SINE MIR 93 199 -9 2352 81 0 0 chr15 84691159 84691456 -1004298 + AluSp SINE Alu 1 297 -16 1390 155 9 94 chr15 84692643 84692984 -1002770 + AluJo SINE Alu 1 312 0 1051 112 31 0 chr15 84693084 84693245 -1002509 + AluSg/x SINE Alu 135 300 -12 858 231 23 14 chr15 84694381 84694597 -1001157 + MER20 DNA MER1_type 1 218 -1 243 0 0 0 chr15 84694737 84694764 -1000990 + (CA)n Simple_repeat Simple_repeat 1 27 0 1711 146 3 14 chr15 84695069 84695363 -1000391 + AluJb SINE Alu 1 291 -21 192 306 120 19 chr15 84696082 84696190 -999564 - MIR SINE MIR -57 151 33 224 365 56 0 chr15 84696882 84696989 -998765 - MIR SINE MIR -70 192 80 615 313 0 6 chr15 84697409 84697588 -998166 - MER58A DNA MER1_type -1 223 46 1597 179 16 7 chr15 84697740 84698048 -997706 + AluJb SINE Alu 1 311 -1 1072 209 8 32 chr15 84698160 84698413 -997341 + L1M4 LINE L1 7 253 -6289 678 220 68 0 chr15 84698424 84698556 -997198 + FRAM SINE Alu 1 141 -35 198 0 0 0 chr15 84698566 84698588 -997166 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5084 216 84 37 chr15 84698593 84699822 -995932 + L1M4 LINE L1 282 1452 -5192 1646 170 7 14 chr15 84699822 84700111 -995643 + AluJb SINE Alu 1 287 -25 1573 148 0 0 chr15 84700114 84700379 -995375 + AluSx SINE Alu 58 322 0 5084 216 84 37 chr15 84700379 84702204 -993550 + L1M4 LINE L1 1453 3505 -3139 326 224 139 73 chr15 84702243 84702502 -993252 - L1ME4a LINE L1 -257 5864 5589 243 310 98 44 chr15 84703244 84703631 -992123 - L2 LINE L2 -341 2973 2566 1654 240 52 9 chr15 84705446 84705884 -989870 + MLT1C LTR MaLR 11 467 0 1469 169 23 0 chr15 84706242 84706503 -989251 + L1MA5 LINE L1 6025 6291 -9 2029 139 0 0 chr15 84706518 84706827 -988927 - AluSx SINE Alu -3 309 1 234 125 25 0 chr15 84707098 84707138 -988616 - L1MA7 LINE L1 -65 6226 6186 * 279 59 0 0 chr15 84707108 84707142 -988612 - L1MA8 LINE L1 -76 6215 6182 375 145 48 46 chr15 84707188 84707243 -988511 - L1MA8 LINE L1 -107 6184 6131 2129 89 26 0 chr15 84707243 84707546 -988208 + AluY SINE Alu 1 311 0 375 145 48 46 chr15 84707546 84707599 -988155 - L1MA8 LINE L1 -160 6131 6073 446 116 74 0 chr15 84707624 84707719 -988035 + L1MA8 LINE L1 6185 6286 -5 3124 192 112 36 chr15 84707723 84708525 -987229 + L1MB8 LINE L1 5154 6034 -144 1569 179 0 27 chr15 84708525 84708822 -986932 + AluJo SINE Alu 1 289 -23 3124 192 112 36 chr15 84708822 84708968 -986786 + L1MB8 LINE L1 6034 6168 -10 1527 177 7 17 chr15 84709178 84709343 -986411 - AluJo SINE Alu -13 299 137 2182 82 0 0 chr15 84709343 84709657 -986097 - AluY SINE Alu 0 311 1 1527 177 7 17 chr15 84709657 84709791 -985963 - AluJo SINE Alu -175 137 3 346 315 74 31 chr15 84710223 84710385 -985369 - MIR SINE MIR -21 241 73 1363 150 60 13 chr15 84910535 84910835 -784919 - HSREP522 Satellite telomeric -188 316 3 473 173 51 15 chr15 84910856 84911268 -784486 - TAR1 Satellite telomeric -465 427 1 237 156 0 0 chr15 84911696 84911741 -784013 - SUBTEL_sa Satellite Satellite -129 45 1 639 192 16 0 chr15 84911807 84911932 -783822 - MER20 DNA MER1_type -70 149 23 257 250 0 42 chr15 84912285 84912357 -783397 - MIR SINE MIR -76 186 118 238 169 34 0 chr15 84913265 84913324 -782430 + (TA)n Simple_repeat Simple_repeat 1 61 0 685 175 54 0 chr15 84913555 84913721 -782033 + L1MA4 LINE L1 5151 5325 -821 646 200 0 62 chr15 84913721 84913748 -782006 + FRAM SINE Alu 33 60 -252 2196 77 17 10 chr15 84913748 84914046 -781708 - AluY SINE Alu -11 300 1 646 200 0 62 chr15 84914046 84914148 -781606 + FRAM SINE Alu 60 154 -22 3664 167 4 38 chr15 84914149 84914908 -780846 + L1MA4 LINE L1 5290 6022 -278 1420 262 80 51 chr15 84915053 84915657 -780097 - MLT1E2 LTR MaLR 0 626 6 293 307 25 80 chr15 84915874 84916037 -779717 - L2 LINE L2 -1 3312 3159 493 205 8 26 chr15 84918868 84918985 -776769 - MER103 DNA DNA -42 124 10 782 131 7 0 chr15 84919152 84919305 -776449 + HSREP522 Satellite telomeric 351 504 0 4537 221 61 11 chr15 84919305 84920604 -775150 - L1 LINE L1 -1998 4148 2785 711 270 103 33 chr15 84920738 84921091 -774663 + HSREP522 Satellite telomeric 1 377 -24 320 212 15 0 chr15 84922692 84922758 -772996 - MIR3 SINE MIR -47 161 95 1225 184 134 0 chr15 84923232 84923493 -772261 + AluJo SINE Alu 1 296 -6 1229 123 0 26 chr15 84923612 84923807 -771947 + MER30B DNA MER1_type 1 190 0 649 175 9 0 chr15 84924167 84924281 -771473 + FLAM_C SINE Alu 1 115 -18 26 0 0 0 chr15 84924283 84924309 -771445 + AT_rich Low_complexity Low_complexity 1 26 0 613 46 120 24 chr15 84925167 84925546 -770208 + (AAATG)n Simple_repeat Simple_repeat 1 415 0 216 58 115 0 chr15 84925559 84925611 -770143 + (AAATG)n Simple_repeat Simple_repeat 5 62 0 713 71 105 33 chr15 84925625 84926472 -769282 + (AAATG)n Simple_repeat Simple_repeat 1 907 0 3336 162 54 40 chr15 84928718 84929566 -766188 + MER4D LTR ERV1 2 465 0 180 0 0 0 chr15 84929638 84929658 -766096 + (GA)n Simple_repeat Simple_repeat 1 20 0 651 272 123 42 chr15 84929763 84930168 -765586 + MLT1D LTR MaLR 68 505 0 267 304 51 51 chr15 84930528 84930666 -765088 - MIR3 SINE MIR -62 146 9 2845 24 0 3 chr15 84930957 84931312 -764442 + L1PA5 LINE L1 5805 6158 0 1244 250 104 13 chr15 84931617 84932069 -763685 - MLT1D LTR MaLR 0 505 13 470 299 116 10 chr15 84932481 84932792 -762962 - LTR16C LTR ERVL -38 453 110 990 328 134 9 chr15 84933465 84934350 -761404 - HAL1 LINE L1 -1379 1128 133 2030 146 0 28 chr15 84935079 84935400 -760354 + AluSx SINE Alu 1 312 0 1915 126 51 43 chr15 84936879 84937251 -758503 + THE1C LTR MaLR 1 375 0 2125 100 3 3 chr15 84938433 84938732 -757022 - AluY SINE Alu -12 299 1 1884 160 0 10 chr15 84938993 84939293 -756461 + AluSx SINE Alu 1 297 -15 502 216 56 74 chr15 84939866 84940097 -755657 - L1MC5 LINE L1 -763 7198 6972 21 82 0 0 chr15 84940110 84940159 -755595 + AT_rich Low_complexity Low_complexity 1 49 0 225 121 71 61 chr15 84940373 84940472 -755282 + (AAATG)n Simple_repeat Simple_repeat 3 102 0 1438 136 120 3 chr15 84940627 84940928 -754826 + Tigger2 DNA MER2_type 2373 2708 -10 21 36 0 0 chr15 84941162 84941190 -754564 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 84941851 84941886 -753868 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr15 84942755 84942785 -752969 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr15 84943066 84943087 -752667 + AT_rich Low_complexity Low_complexity 1 21 0 2119 131 0 3 chr15 84943164 84943476 -752278 - AluSx SINE Alu -1 311 1 195 139 0 0 chr15 84943505 84943541 -752213 + (TC)n Simple_repeat Simple_repeat 1 36 0 453 333 103 26 chr15 84943733 84944111 -751643 - L1MEd LINE L1 -3303 2826 2420 319 309 79 73 chr15 84944149 84944479 -751275 - L1MEd LINE L1 -3682 2447 2116 180 0 0 0 chr15 84944517 84944537 -751217 + (TA)n Simple_repeat Simple_repeat 1 20 0 2208 100 0 13 chr15 84944663 84944964 -750790 + AluSg SINE Alu 1 297 -13 246 313 39 25 chr15 84945427 84945682 -750072 - L1MEd LINE L1 -4867 1252 1055 22 35 0 0 chr15 84945826 84945855 -749899 + AT_rich Low_complexity Low_complexity 1 29 0 300 294 54 0 chr15 84946060 84946152 -749602 - L1MEd LINE L1 -5493 626 530 25 31 0 0 chr15 84949583 84949615 -746139 + AT_rich Low_complexity Low_complexity 1 32 0 1576 201 36 0 chr15 84949671 84950005 -745749 + MER7A DNA MER2_type 3 346 0 481 272 100 28 chr15 84950637 84950911 -744843 - MER77 LTR ERV1 -4 601 323 27 49 0 0 chr15 84951029 84951070 -744684 + AT_rich Low_complexity Low_complexity 1 41 0 3778 262 71 16 chr15 84951079 84952865 -742889 + L1MB8 LINE L1 3565 5445 -729 648 210 23 11 chr15 84952881 84953057 -742697 + L1MB8 LINE L1 5562 5739 -435 1395 219 36 16 chr15 84953243 84953631 -742123 + L1MB8 LINE L1 5783 6178 0 458 355 78 13 chr15 84953692 84953977 -741777 - L2 LINE L2 -266 3047 2748 182 296 57 105 chr15 84953998 84954245 -741509 + L3 LINE CR1 760 994 -583 1161 169 5 5 chr15 84955587 84955806 -739948 + L1MB3 LINE L1 5964 6182 -1 609 317 84 59 chr15 84955915 84956628 -739126 + L1MEc LINE L1 546 1276 -5120 788 132 31 0 chr15 84956700 84956829 -738925 - MSTB1 LTR MaLR -299 133 1 2674 106 22 44 chr15 84959834 84960288 -735466 + MLT2A1 LTR ERVL 1 444 0 1833 114 0 0 chr15 84960288 84960551 -735203 + HERVL-A1 LTR ERVL 1 263 -5391 * 3534 108 2 2 chr15 84960540 84961038 -734716 + HERVL-A1 LTR ERVL 1317 1814 -3840 * 14068 113 15 2 chr15 84961031 84963463 -732291 + HERVL-A1 LTR ERVL 3162 5654 0 2776 96 8 3 chr15 84963463 84963847 -731907 + MLT2A1 LTR ERVL 1 386 -58 295 164 0 0 chr15 84963847 84963902 -731852 - MLT2A1 LTR ERVL 0 453 399 222 171 0 0 chr15 84963905 84963946 -731808 + (CA)n Simple_repeat Simple_repeat 2 42 0 2296 97 114 6 chr15 84963949 84964310 -731444 - MLT2A1 LTR ERVL -40 404 5 385 88 0 59 chr15 84964313 84964381 -731373 + MLT2A1 LTR ERVL 381 444 0 652 243 15 0 chr15 84964654 84964790 -730964 + FRAM SINE Alu 6 143 -33 316 221 12 12 chr15 84964817 84964903 -730851 + LTR49 LTR ERV1 500 585 -10 2116 116 3 16 chr15 84964907 84965217 -730537 + AluSp SINE Alu 8 313 0 25 0 0 0 chr15 84965353 84965378 -730376 + AT_rich Low_complexity Low_complexity 1 25 0 571 359 134 21 chr15 84965906 84966627 -729127 + L2 LINE L2 2049 2851 -463 308 331 57 19 chr15 84966702 84966859 -728895 + L2 LINE L2 2924 3086 -186 263 200 0 0 chr15 84966975 84967030 -728724 + Alu SINE Alu 234 288 -12 180 326 146 11 chr15 84967031 84967120 -728634 - MER5B DNA MER1_type -54 124 24 254 250 191 24 chr15 84967153 84967237 -728517 + MER5A DNA MER1_type 9 106 -83 26 0 0 0 chr15 84967237 84967263 -728491 + AT_rich Low_complexity Low_complexity 1 26 0 816 207 4 58 chr15 84967357 84967632 -728122 - AluSx SINE Alu -11 301 42 1344 165 0 0 chr15 84967925 84968125 -727629 - AluSx SINE Alu -112 200 1 4357 123 61 8 chr15 84968250 84968993 -726761 - L1MA5A LINE L1 -4 6293 5512 522 158 97 26 chr15 84968993 84969107 -726647 + AluSg/x SINE Alu 168 289 -23 6252 158 27 5 chr15 84969109 84970473 -725281 - L1MA5A LINE L1 -743 5403 4126 1657 178 0 14 chr15 84970716 84971008 -724746 + AluJb SINE Alu 1 288 -24 1646 74 0 5 chr15 84971087 84971304 -724450 + L1PA7 LINE L1 5931 6146 -8 22 35 0 0 chr15 84971565 84971594 -724160 + AT_rich Low_complexity Low_complexity 1 29 0 506 260 44 17 chr15 84971733 84971914 -723840 + L1M4 LINE L1 4834 5019 -1127 660 220 50 31 chr15 84971922 84972081 -723673 + AluJo SINE Alu 126 287 -25 937 244 22 35 chr15 84972096 84972407 -723347 + L1M4 LINE L1 5022 5328 -818 272 169 51 0 chr15 84972403 84972462 -723292 + L1MD2 LINE L1 6275 6336 -23 * 21 0 0 0 chr15 84972553 84972574 -723180 + AT_rich Low_complexity Low_complexity 1 21 0 234 295 48 38 chr15 84974046 84974256 -721498 + HAL1b LINE L1 693 904 -444 236 297 33 0 chr15 84974586 84974677 -721077 + L1M4 LINE L1 2144 2237 -3909 234 0 0 0 chr15 84975749 84975775 -719979 + (TA)n Simple_repeat Simple_repeat 1 26 0 220 254 9 45 chr15 84977530 84977640 -718114 + (CATATA)n Simple_repeat Simple_repeat 5 110 0 1479 179 83 64 chr15 84977674 84978060 -717694 - LTR49 LTR ERV1 -168 427 31 2027 114 7 4 chr15 84978060 84978333 -717421 + AluSq SINE Alu 18 291 -22 1479 179 83 64 chr15 84978333 84978365 -717389 - LTR49 LTR ERV1 -564 31 1 25 31 0 0 chr15 84979058 84979090 -716664 + AT_rich Low_complexity Low_complexity 1 32 0 571 233 138 11 chr15 84979342 84979531 -716223 + MER20 DNA MER1_type 4 216 -3 1682 173 61 23 chr15 84979671 84980100 -715654 - LTR56 LTR ERV1 0 445 1 2306 180 97 13 chr15 84980288 84980832 -714922 - LTR49 LTR ERV1 -5 590 1 21 0 0 0 chr15 84980970 84980991 -714763 + AT_rich Low_complexity Low_complexity 1 21 0 22 20 5 0 chr15 84981398 84981455 -714299 + AT_rich Low_complexity Low_complexity 1 29 0 345 271 24 18 chr15 84981606 84981772 -713982 + (TA)n Simple_repeat Simple_repeat 1 167 0 26 0 0 0 chr15 84981869 84981895 -713859 + AT_rich Low_complexity Low_complexity 1 26 0 1387 248 46 10 chr15 84982698 84983114 -712640 - MER54A LTR ERVL 0 901 471 2057 136 74 15 chr15 84983150 84983488 -712266 - THE1B LTR MaLR 0 364 7 1568 206 61 13 chr15 84983497 84983890 -711864 - MER54A LTR ERVL -489 412 1 1457 222 0 4 chr15 84985090 84985369 -710385 - AluJb SINE Alu -24 288 11 1158 264 43 75 chr15 84986368 84986601 -709153 - MLT1D LTR MaLR -9 496 257 1978 105 7 18 chr15 84986601 84986887 -708867 - AluSg SINE Alu -16 294 12 1158 264 43 75 chr15 84986887 84987161 -708593 - MLT1D LTR MaLR -248 257 5 22 0 0 0 chr15 84987219 84987241 -708513 + AT_rich Low_complexity Low_complexity 1 22 0 553 201 27 0 chr15 84987255 84987404 -708350 + GA-rich Low_complexity Low_complexity 4 156 0 22 35 0 0 chr15 84987558 84987587 -708167 + AT_rich Low_complexity Low_complexity 1 29 0 791 252 50 21 chr15 84987939 84988316 -707438 - L1MCa LINE L1 -3509 2917 2530 408 293 86 29 chr15 84988356 84988530 -707224 - L1MCa LINE L1 -4990 1436 1253 1385 228 7 10 chr15 84988764 84989058 -706696 - MLT1A1 LTR MaLR 0 365 73 1159 239 163 38 chr15 84989891 84990338 -705416 - L1MB5 LINE L1 -10 6164 5662 416 306 25 20 chr15 84990339 84990535 -705219 + L1M4c LINE L1 1518 1714 -4670 26 30 0 0 chr15 84990535 84990568 -705186 + AT_rich Low_complexity Low_complexity 1 33 0 2244 88 0 0 chr15 84990718 84991001 -704753 + AluY SINE Alu 1 283 -28 541 262 103 12 chr15 84991433 84991719 -704035 + L1M4c LINE L1 2336 2600 -3782 1850 208 106 9 chr15 84991810 84992233 -703521 + MLT1C LTR MaLR 4 467 0 386 133 0 0 chr15 84992304 84992364 -703390 + MLT1C LTR MaLR 408 467 0 305 269 115 26 chr15 84992451 84992607 -703147 + L1M4 LINE L1 42 211 -6331 340 317 16 6 chr15 84992907 84993060 -702694 + L1M4 LINE L1 553 929 -5717 1453 237 106 59 chr15 84993465 84994161 -701593 + L1M4 LINE L1 820 1548 -4994 256 266 0 29 chr15 84994185 84994324 -701430 + CT-rich Low_complexity Low_complexity 1 135 0 24 32 0 0 chr15 84994614 84994645 -701109 + AT_rich Low_complexity Low_complexity 1 31 0 477 334 84 32 chr15 84995079 84995426 -700328 - L2 LINE L2 -499 2815 2451 270 274 20 20 chr15 84996283 84996385 -699369 + HERVL LTR ERVL 506 607 -5047 474 325 42 11 chr15 84996739 84996930 -698824 + HERVL LTR ERVL 2267 2463 -3191 560 176 8 30 chr15 84998189 84998320 -697434 - L1M4 LINE L1 -838 5308 5181 2109 85 51 3 chr15 84998320 84998615 -697139 - AluY SINE Alu -2 309 1 227 219 12 12 chr15 84998642 84998724 -697030 + T-rich Low_complexity Low_complexity 1 82 0 732 241 69 16 chr15 84998841 84999144 -696610 - LTR48 LTR ERV1 -1 786 409 22 56 0 0 chr15 84999172 84999208 -696546 + AT_rich Low_complexity Low_complexity 1 36 0 1421 216 3 29 chr15 84999247 84999562 -696192 - AluJb SINE Alu -5 307 1 607 256 0 8 chr15 84999673 84999794 -695960 - FLAM_A SINE Alu -13 120 1 22 56 0 0 chr15 84999836 84999872 -695882 + AT_rich Low_complexity Low_complexity 1 36 0 429 54 0 0 chr15 84999964 85000020 -695734 + (CA)n Simple_repeat Simple_repeat 1 56 0 378 234 40 8 chr15 85000400 85000524 -695230 - MER115 DNA AcHobo -8 685 558 374 145 0 79 chr15 85000573 85000649 -695105 - MER115 DNA AcHobo -115 578 509 672 178 185 0 chr15 85001436 85001582 -694172 - MSTA LTR MaLR 0 428 256 225 0 0 0 chr15 85001582 85001607 -694147 + (A)n Simple_repeat Simple_repeat 1 25 0 207 272 74 12 chr15 85002290 85002371 -693383 + L2 LINE L2 3186 3271 -1 386 167 274 0 chr15 85002464 85002566 -693188 - MSTA LTR MaLR -24 404 275 251 215 89 25 chr15 85002655 85002734 -693020 - MLT1L LTR MaLR -417 198 115 478 107 12 12 chr15 85002792 85002876 -692878 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 1560 179 43 23 chr15 85002884 85003186 -692568 - AluJb SINE Alu -4 308 1 180 82 41 20 chr15 85004059 85004108 -691646 + (TA)n Simple_repeat Simple_repeat 1 50 0 324 256 0 22 chr15 85004114 85004204 -691550 - L1MC4 LINE L1 -1337 6705 6618 2074 139 7 0 chr15 85004393 85004695 -691059 + AluSq SINE Alu 1 304 -9 1003 282 46 5 chr15 85004954 85005390 -690364 + L1ME4a LINE L1 5256 5709 -461 280 83 0 21 chr15 85005391 85005439 -690315 + FRAM/FAM SINE Alu 42 88 -78 311 188 0 99 chr15 85005443 85005544 -690210 - AluJo SINE Alu -129 173 83 444 111 0 0 chr15 85005644 85005707 -690047 - AluJ/FLAM SINE Alu -249 63 1 228 213 0 0 chr15 85006826 85006887 -688867 + T-rich Low_complexity Low_complexity 1 61 0 298 203 14 40 chr15 85007547 85007621 -688133 - L2 LINE L2 -1 3312 3241 402 254 105 19 chr15 85007674 85007883 -687871 + L1ME4a LINE L1 5690 5916 -205 459 52 0 0 chr15 85007884 85007942 -687812 + (CATA)n Simple_repeat Simple_repeat 3 60 0 39102 47 31 1 chr15 85007981 85013955 -681799 + L1HS LINE L1 1 6155 0 1248 156 0 5 chr15 85014368 85014579 -681175 + MER2 DNA MER2_type 1 210 -135 2268 113 0 3 chr15 85016109 85016409 -679345 + AluSq SINE Alu 1 299 -14 755 263 16 20 chr15 85017342 85017665 -678089 - MER34C LTR ERV1 -158 427 63 6156 39 1 3 chr15 85018407 85019155 -676599 + L1PA5 LINE L1 5408 6154 0 206 299 69 0 chr15 85019917 85020004 -675750 - L2 LINE L2 -5 3308 3216 24 77 0 0 chr15 85021501 85021553 -674201 + AT_rich Low_complexity Low_complexity 1 52 0 1761 171 10 27 chr15 85022021 85022320 -673434 - AluSp SINE Alu -19 294 1 2002 157 0 0 chr15 85022692 85022986 -672768 + AluSx SINE Alu 1 294 -18 3305 181 3 14 chr15 85023538 85024196 -671558 - L1MA5 LINE L1 -7 6293 5643 2472 215 32 24 chr15 85024199 85024907 -670847 + L1 LINE L1 3884 4597 -1549 30 27 0 0 chr15 85025545 85025582 -670172 + AT_rich Low_complexity Low_complexity 1 37 0 489 115 92 0 chr15 85025630 85025760 -669994 + (CATCT)n Simple_repeat Simple_repeat 5 146 0 753 93 70 15 chr15 85025925 85026324 -669430 + (CATTT)n Simple_repeat Simple_repeat 1 421 0 565 110 82 12 chr15 85026346 85026591 -669163 + (CATTT)n Simple_repeat Simple_repeat 1 262 0 639 102 57 40 chr15 85026591 85026767 -668987 + (CATCT)n Simple_repeat Simple_repeat 1 179 0 361 123 49 0 chr15 85026778 85026859 -668895 + (CATCT)n Simple_repeat Simple_repeat 5 89 0 659 91 65 26 chr15 85026901 85027055 -668699 + (CATCT)n Simple_repeat Simple_repeat 5 164 0 637 146 47 6 chr15 85027073 85027244 -668510 + (CATCT)n Simple_repeat Simple_repeat 2 179 0 570 109 73 24 chr15 85027258 85027423 -668331 + (CATTT)n Simple_repeat Simple_repeat 2 174 0 726 88 55 41 chr15 85027439 85027876 -667878 + (CATTT)n Simple_repeat Simple_repeat 1 443 0 367 154 21 69 chr15 85027926 85028114 -667640 + (CATCT)n Simple_repeat Simple_repeat 1 179 0 1532 196 50 13 chr15 85028213 85028569 -667185 - AluJo SINE Alu 0 367 1 198 0 0 0 chr15 85028569 85028591 -667163 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 749 174 26 0 chr15 85028592 85028707 -667047 - FLAM_C SINE Alu -15 118 1 259 313 47 0 chr15 85029136 85029264 -666490 + (CTAGGG)n Simple_repeat Simple_repeat 3 136 0 270 124 0 85 chr15 85029278 85029431 -666323 + (CAGGG)n Simple_repeat Simple_repeat 1 140 0 278 233 17 78 chr15 85029466 85029646 -666108 + (CAAGG)n Simple_repeat Simple_repeat 3 171 0 * 386 204 0 85 chr15 85029558 85029734 -666020 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 233 139 0 86 chr15 85029785 85029936 -665818 + (CAGGG)n Simple_repeat Simple_repeat 1 138 0 228 234 0 56 chr15 85030067 85030174 -665580 + (CAGAG)n Simple_repeat Simple_repeat 1 101 0 * 458 204 0 63 chr15 85030122 85030313 -665441 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 213 136 0 76 chr15 85030334 85030400 -665354 + (CCCTG)n Simple_repeat Simple_repeat 1 61 0 803 126 0 17 chr15 85030454 85030573 -665181 - AluSq/x SINE Alu -180 133 17 403 213 32 11 chr15 85030575 85030669 -665085 + MIR SINE MIR 92 187 -75 385 280 54 0 chr15 85030873 85031041 -664713 + (CCCTAG)n Simple_repeat Simple_repeat 1 177 0 323 317 124 84 chr15 85031112 85032005 -663749 - L1M2 LINE L1 -5476 1373 445 239 294 50 6 chr15 85032055 85032215 -663539 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 275 228 6 64 chr15 85032195 85032366 -663388 + (CAGGG)n Simple_repeat Simple_repeat 3 163 0 206 42 0 0 chr15 85032423 85032447 -663307 + (CAGGC)n Simple_repeat Simple_repeat 1 24 0 382 161 0 96 chr15 85032682 85032881 -662873 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 351 236 56 19 chr15 85032906 85033067 -662687 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 409 168 0 114 chr15 85032952 85033192 -662562 + (CAGGG)n Simple_repeat Simple_repeat 1 212 0 324 212 0 66 chr15 85033336 85033487 -662267 + (CAGGG)n Simple_repeat Simple_repeat 1 141 0 353 269 62 0 chr15 85033527 85033687 -662067 + (CTAGGG)n Simple_repeat Simple_repeat 1 170 0 288 192 0 93 chr15 85033645 85033838 -661916 + (CAGGG)n Simple_repeat Simple_repeat 2 176 0 * 180 163 41 0 chr15 85033918 85033967 -661787 + (CTAGGG)n Simple_repeat Simple_repeat 2 52 0 353 209 5 70 chr15 85033975 85034210 -661544 + (CAGGG)n Simple_repeat Simple_repeat 1 219 0 291 309 93 25 chr15 85034406 85034568 -661186 + L1MB1 LINE L1 910 1082 -5571 362 298 25 8 chr15 85034930 85035051 -660703 + L1MB1 LINE L1 988 1110 -5543 588 324 8 4 chr15 85035231 85035469 -660285 + L1MB1 LINE L1 1453 1691 -4962 7910 192 40 61 chr15 85035483 85037554 -658200 + L1MB1 LINE L1 3293 5275 -1479 1763 133 7 7 chr15 85037554 85037825 -657929 + AluSx SINE Alu 40 310 -2 7910 192 40 61 chr15 85037825 85038903 -656851 + L1MB1 LINE L1 5275 6373 -381 225 211 56 0 chr15 85038871 85038942 -656812 + L1MC4 LINE L1 7215 7289 -1339 * 243 135 0 67 chr15 85038944 85039033 -656721 + (TA)n Simple_repeat Simple_repeat 1 83 0 1495 202 21 26 chr15 85039042 85039424 -656330 + L1MB1 LINE L1 6362 6741 -13 1075 321 72 22 chr15 85039432 85040041 -655713 - L2 LINE L2 -90 3223 2574 1107 245 36 15 chr15 85041576 85041907 -653847 + MLT1A1 LTR MaLR 26 363 -2 441 118 0 26 chr15 85042464 85042540 -653214 - AluJo SINE Alu -4 308 235 281 186 43 14 chr15 85042540 85042610 -653144 - MER52A LTR ERV1 0 1755 1684 * 3319 198 113 81 chr15 85042602 85043738 -652016 - MER52A LTR ERV1 -559 1196 25 1169 231 4 16 chr15 85043743 85043986 -651768 - AluJo SINE Alu -72 240 1 1378 196 52 60 chr15 85045034 85045119 -650635 + MLT1A1 LTR MaLR 1 85 -280 2272 106 0 0 chr15 85045119 85045432 -650322 + AluSg SINE Alu 1 313 0 1378 196 52 60 chr15 85045432 85045713 -650041 + MLT1A1 LTR MaLR 85 365 0 498 288 88 40 chr15 85049282 85049729 -646025 + LTR33 LTR ERVL 9 507 -14 225 333 11 33 chr15 85050116 85050206 -645548 - L2 LINE L2 -10 3262 3175 586 302 30 30 chr15 85050277 85050509 -645245 - MIR SINE MIR 0 262 31 2649 158 15 7 chr15 85050736 85051199 -644555 + L1PA16 LINE L1 5683 6149 -17 31 0 0 0 chr15 85051202 85051233 -644521 + AT_rich Low_complexity Low_complexity 1 31 0 545 41 0 14 chr15 85052817 85052890 -642864 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr15 85053059 85053089 -642665 + AT_rich Low_complexity Low_complexity 1 30 0 17991 41 1 4 chr15 85054079 85056316 -639438 - L1P LINE L1 -3386 2760 529 245 278 56 22 chr15 85057454 85057544 -638210 - L3 LINE CR1 -189 1388 1296 2193 100 0 22 chr15 85059271 85059582 -636172 - AluSx SINE Alu -8 304 1 786 133 7 14 chr15 85060510 85060653 -635101 - L1PA13 LINE L1 0 6163 6022 402 360 48 34 chr15 85061719 85062072 -633682 + L2 LINE L2 2312 2669 -645 2850 239 50 4 chr15 85062168 85062884 -632870 + L1MD2 LINE L1 5390 6138 -221 298 244 256 0 chr15 85062904 85063060 -632694 + L1MD3 LINE L1 7786 7981 -14 22 0 0 0 chr15 85063600 85063622 -632132 + AT_rich Low_complexity Low_complexity 1 22 0 455 327 154 28 chr15 85064318 85064618 -631136 + L2 LINE L2 2737 3070 -243 712 258 56 15 chr15 85064629 85064827 -630927 - MER63A DNA MER1_type -1 209 4 339 324 144 0 chr15 85064925 85065036 -630718 + L2 LINE L2 3187 3313 0 300 235 162 22 chr15 85067045 85067271 -628483 - Charlie7 DNA MER1_type 0 2612 3 207 219 0 0 chr15 85067701 85067742 -628012 + (TTA)n Simple_repeat Simple_repeat 3 43 0 937 269 14 0 chr15 85067794 85068013 -627741 - MER58A DNA MER1_type 0 224 3 1558 207 23 26 chr15 85068092 85068440 -627314 + MER7A DNA MER2_type 1 345 -1 1257 187 107 33 chr15 85068583 85068920 -626834 + MLT1A1 LTR MaLR 4 365 0 51 51 0 0 chr15 85069498 85069577 -626177 + AT_rich Low_complexity Low_complexity 1 79 0 523 344 32 16 chr15 85070158 85070411 -625343 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr15 85070774 85070824 -624930 + AT_rich Low_complexity Low_complexity 1 50 0 354 219 109 8 chr15 85071837 85071965 -623789 + MER103 DNA DNA 11 151 -15 428 341 18 66 chr15 85072584 85072810 -622944 - MIR SINE MIR -30 232 18 1131 275 37 21 chr15 85073293 85073733 -622021 - L2 LINE L2 -5 3308 2814 718 278 43 0 chr15 85073758 85073945 -621809 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr15 85073958 85074003 -621751 - L2 LINE L2 -514 2800 2756 716 290 119 58 chr15 85074011 85074525 -621229 + MLT1H1 LTR MaLR 4 548 -19 1571 305 116 14 chr15 85074538 85075227 -620527 - L2 LINE L2 -553 2761 2003 2090 152 28 14 chr15 85075495 85075857 -619897 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr15 85076461 85076482 -619272 + AT_rich Low_complexity Low_complexity 1 21 0 533 210 55 0 chr15 85077050 85077231 -618523 - L1MCa LINE L1 -2889 3537 3347 6403 160 12 11 chr15 85077238 85077599 -618155 - L1PB1 LINE L1 0 6151 5792 376 77 31 0 chr15 85077599 85077664 -618090 + (TA)n Simple_repeat Simple_repeat 2 68 0 6403 160 12 11 chr15 85077664 85079479 -616275 - L1PB1 LINE L1 -359 5792 3974 704 200 32 16 chr15 85079454 85079644 -616110 - L1MCa LINE L1 -3092 3334 3142 * 2272 202 48 24 chr15 85079658 85080521 -615233 - L1MCa LINE L1 -3495 2931 2024 414 156 90 8 chr15 85080582 85080704 -615050 - L1MCa LINE L1 -4362 2064 1933 322 379 94 10 chr15 85080705 85080908 -614846 + L3 LINE CR1 1293 1512 -65 247 226 95 0 chr15 85082898 85082982 -612772 + L1ME4a LINE L1 5844 5935 -186 26 50 0 0 chr15 85083049 85083089 -612665 + AT_rich Low_complexity Low_complexity 1 40 0 240 111 0 0 chr15 85083524 85083560 -612194 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 186 43 0 0 chr15 85084798 85084821 -610933 + (TTA)n Simple_repeat Simple_repeat 2 24 0 22117 47 5 1 chr15 85084821 85088359 -607395 - L1PA5 LINE L1 -19 6135 2572 190 314 197 22 chr15 85088402 85088539 -607215 - MIR SINE MIR -101 161 1 184 369 65 42 chr15 85088557 85088725 -607029 + L2 LINE L2 2687 2858 -456 21 36 0 0 chr15 85089023 85089051 -606703 + AT_rich Low_complexity Low_complexity 1 28 0 422 309 88 8 chr15 85091214 85091463 -604291 - L1ME LINE L1 -328 5793 5525 1890 145 93 0 chr15 85091764 85092096 -603658 - THE1C LTR MaLR -12 363 1 231 69 0 0 chr15 85092584 85092613 -603141 + LTR6A LTR ERV1 73 101 -463 982 190 3 12 chr15 85292994 85294370 -401384 - ALR/Alpha Satellite centromeric 0 1362 1 1003 174 7 2 chr15 85294733 85296719 -399035 - ALR/Alpha Satellite centromeric 0 1995 1 1167 159 4 1 chr15 85296730 85304636 -391118 - ALR/Alpha Satellite centromeric 0 7930 1 2210 44 4 0 chr15 85304636 85304911 -390843 + L1PA3 LINE L1 5721 5996 -159 1102 181 5 6 chr15 85305236 85306598 -389156 + ALR/Alpha Satellite centromeric 1 1360 0 7409 28 0 0 chr15 85306609 85308033 -387721 - L1PA2 LINE L1 -16 6139 4716 4876 34 2 0 chr15 85308033 85308612 -387142 + L1P LINE L1 4073 4655 -1491 1206 163 6 3 chr15 85308612 85311858 -383896 + ALR/Alpha Satellite centromeric 1 3234 -4215 3419 36 5 0 chr15 85311858 85312276 -383478 - L1PA3 LINE L1 -4 6151 5732 1206 163 6 3 chr15 85312276 85316023 -379731 + ALR/Alpha Satellite centromeric 3234 7436 -13 1193 170 3 3 chr15 85316036 85316951 -378803 + ALR/Alpha Satellite centromeric 1 914 -5135 6815 54 1 0 chr15 85316951 85317865 -377889 + L1PA3 LINE L1 5293 6207 0 1193 170 3 3 chr15 85317865 85322031 -373723 + ALR/Alpha Satellite centromeric 914 5998 -51 1033 178 14 3 chr15 85322134 85323682 -372072 + ALR/Alpha Satellite centromeric 1 1564 -77 1366 70 5 15 chr15 85323821 85324020 -371734 + L1PA3 LINE L1 5959 6155 0 1076 163 2 0 chr15 85324020 85326101 -369653 - ALR/Alpha Satellite centromeric 0 2084 1 17839 98 9 4 chr15 85326245 85328763 -366991 - L1P LINE L1 -3615 2531 2 1172 166 4 2 chr15 85328776 85335104 -360650 - ALR/Alpha Satellite centromeric -8 6342 1 22525 47 1 0 chr15 85335119 85338713 -357041 - L1PA3 LINE L1 -3 6152 2555 1161 165 3 2 chr15 85338813 85346914 -348840 - ALR/Alpha Satellite centromeric 0 8107 1 1152 177 5 2 chr15 85347296 85362630 -333124 - ALR/Alpha Satellite centromeric 0 15373 1 1152 177 3 2 chr15 85362746 85364927 -330827 - ALR/Alpha Satellite centromeric 0 2182 1 1112 182 2 3 chr15 85364940 85368072 -327682 - ALR/Alpha Satellite centromeric 0 3130 1 1843 68 4 0 chr15 85568072 85568307 -127447 + AluY SINE Alu 75 310 -1 641 249 108 0 chr15 85568313 85568610 -127144 + L1M4 LINE L1 2110 2438 -3708 972 265 112 41 chr15 85568692 85569625 -126129 + L1M4 LINE L1 2671 3669 -2477 3041 146 50 10 chr15 85569663 85570280 -125474 - L1MB1 LINE L1 -189 5979 5338 503 264 39 22 chr15 85570294 85570476 -125278 + L1M4 LINE L1 3951 4135 -2011 227 143 24 24 chr15 85571478 85571520 -124234 + MER5B DNA MER1_type 1 42 -136 2144 107 4 0 chr15 85572707 85573017 -122737 + AluSc SINE Alu 1 311 0 595 310 86 4 chr15 85573780 85574048 -121706 + LTR16A LTR ERVL 139 428 -22 600 168 27 13 chr15 85575352 85575501 -120253 - MER65A LTR ERV1 0 445 295 1433 186 35 0 chr15 85575525 85575810 -119944 - MER65A LTR ERV1 -111 334 40 235 116 23 0 chr15 85576111 85576154 -119600 - MADE1 DNA Mariner -3 77 34 897 122 7 0 chr15 85576568 85576716 -119038 + L1PB1 LINE L1 6000 6148 -3 753 318 62 3 chr15 85577004 85577312 -118442 + LTR40a LTR ERVL 2 327 -192 2748 233 20 13 chr15 85577323 85578108 -117646 - L1 LINE L1 -1296 4850 4060 1793 73 0 2 chr15 85578113 85578397 -117357 + LTR14A LTR ERVK 1 344 0 610 109 20 0 chr15 85578397 85578498 -117256 + HERVK14 LTR ERVK 1 103 -5842 * 11912 96 4 1 chr15 85578492 85580173 -115581 + HERVK14 LTR ERVK 205 1890 -4055 3083 81 148 5 chr15 85580173 85580618 -115136 + MER9 LTR ERVK 1 509 -2 18431 89 17 27 chr15 85580620 85581385 -114369 + HERVK9 LTR ERVK 1 772 -5144 187 250 0 83 chr15 85581385 85581445 -114309 + MER5B DNA MER1_type 55 109 -69 18431 89 17 27 chr15 85581445 85583435 -112319 + HERVK9 LTR ERVK 772 2786 -3130 1840 39 0 0 chr15 85583435 85583665 -112089 + HERVK9 LTR ERVK 3711 3940 -1976 1956 129 3 9 chr15 85583666 85583991 -111763 + HERVK9 LTR ERVK 4583 4905 -1011 1784 82 0 0 chr15 85584025 85584245 -111509 + AluY SINE Alu 1 220 -91 2065 133 13 0 chr15 85584361 85584663 -111091 + AluSp SINE Alu 1 306 -7 253 289 19 19 chr15 85585058 85585162 -110592 + LTR49-int LTR ERV1 2417 2520 -3811 384 22 0 0 chr15 85585376 85585421 -110333 + (CA)n Simple_repeat Simple_repeat 1 45 0 2076 133 0 0 chr15 85585421 85585707 -110047 - AluSx SINE Alu -24 288 3 225 0 0 0 chr15 85585709 85585737 -110017 + (TG)n Simple_repeat Simple_repeat 1 53 0 225 0 0 0 chr15 85585737 85585762 -109992 + (TG)n Simple_repeat Simple_repeat 2 26 0 2011 172 0 0 chr15 85585773 85586075 -109679 - AluSx SINE Alu -10 302 1 608 257 52 29 chr15 85586075 85586285 -109469 + LTR57-int LTR ERVL 361 575 -4768 1686 201 3 10 chr15 85586312 85586616 -109138 - AluJb SINE Alu -8 304 3 2384 176 61 75 chr15 85586626 85587095 -108659 + LTR49-int LTR ERV1 1010 1484 -4847 1440 201 58 4 chr15 85587095 85587369 -108385 - AluJo SINE Alu -23 289 1 2384 176 61 75 chr15 85587369 85587457 -108297 + LTR49-int LTR ERV1 1484 1572 -4759 2020 138 0 7 chr15 85587457 85587746 -108008 + AluSq SINE Alu 3 289 -24 2384 176 61 75 chr15 85587746 85588201 -107553 + LTR49-int LTR ERV1 1572 3853 -2478 825 228 68 28 chr15 85588594 85588922 -106832 + LTR49-int LTR ERV1 3729 4099 -2232 1836 187 3 0 chr15 85588922 85589232 -106522 + AluJb SINE Alu 1 311 -1 825 228 68 28 chr15 85589232 85589285 -106469 + LTR49-int LTR ERV1 4099 4148 -2183 1861 164 7 3 chr15 85589340 85589633 -106121 - AluSx SINE Alu -18 294 1 29 47 0 0 chr15 85589665 85589708 -106046 + AT_rich Low_complexity Low_complexity 1 43 0 3278 165 36 103 chr15 85589760 85590056 -105698 + LTR49-int LTR ERV1 3363 3677 -2654 1693 192 3 10 chr15 85590056 85590347 -105407 + AluJb SINE Alu 5 293 -19 3278 165 36 103 chr15 85590347 85591133 -104621 + LTR49-int LTR ERV1 3677 5318 -1013 566 152 0 0 chr15 85591136 85591228 -104526 + L1PA7 LINE L1 5 96 -6365 * 13846 103 13 2 chr15 85591204 85596423 -99331 + L1PA7 LINE L1 1135 6465 -4 2001 128 58 6 chr15 85596439 85596835 -98919 + LTR49-int LTR ERV1 5310 5777 -639 2769 175 44 8 chr15 85597610 85598136 -97618 + MER52A LTR ERV1 1211 1755 0 7262 206 51 28 chr15 85598139 85598791 -96963 - L1MA3 LINE L1 -300 6005 5369 1592 198 55 3 chr15 85598791 85599084 -96670 - AluJb SINE Alu -4 308 1 7262 206 51 28 chr15 85599084 85599521 -96233 - L1MA3 LINE L1 -936 5369 4943 1749 103 15 37 chr15 85599521 85599793 -95961 + AluY SINE Alu 30 295 -16 7262 206 51 28 chr15 85599793 85601154 -94600 - L1MA3 LINE L1 -1362 4943 3614 1972 141 13 16 chr15 85601154 85601493 -94261 - AluSx SINE Alu 0 312 1 7262 206 51 28 chr15 85601493 85601915 -93839 - L1MA3 LINE L1 -2691 3614 2962 2392 92 0 19 chr15 85601915 85602231 -93523 - AluY SINE Alu -1 310 1 7262 206 51 28 chr15 85602231 85602253 -93501 - L1MA3 LINE L1 -3343 2962 2942 337 191 24 24 chr15 85602258 85602342 -93412 + LTR45 LTR ERV1 442 525 0 699 268 65 12 chr15 85602346 85602668 -93086 + L1M4 LINE L1 4133 4471 -1675 730 241 35 56 chr15 85603211 85603585 -92169 - MER66A LTR ERV1 -45 433 68 2467 58 3 0 chr15 85604164 85604459 -91295 + AluSg SINE Alu 1 296 -14 318 233 23 62 chr15 85606012 85606141 -89613 - MLT1H LTR MaLR 0 549 426 3680 126 5 11 chr15 85607843 85608407 -87347 - LTR6A LTR ERV1 0 564 4 250 163 0 0 chr15 85608407 85608450 -87304 - LTR6A LTR ERV1 -521 43 1 2192 150 90 2 chr15 85608491 85608890 -86864 - MER57B LTR ERV1 0 434 1 1282 135 131 0 chr15 85608890 85609119 -86635 - MER57B-int LTR ERV1 0 7537 7279 697 115 23 31 chr15 85609119 85609249 -86505 - LTR54B LTR ERV1 -367 131 3 2227 110 0 0 chr15 85609264 85609555 -86199 + AluY SINE Alu 1 291 -20 696 136 9 0 chr15 85609555 85609665 -86089 - MER57B-int LTR ERV1 -395 7142 7032 2225 157 33 5 chr15 85610051 85610447 -85307 - MER57B-int LTR ERV1 -470 7067 6661 6718 118 22 39 chr15 85610447 85611380 -84374 - MER57B-int LTR ERV1 -1358 6179 5232 2229 103 7 26 chr15 85611380 85611690 -84064 - AluSx SINE Alu -8 304 1 6718 118 22 39 chr15 85611690 85612003 -83751 - MER57B-int LTR ERV1 -2305 5232 4952 2137 134 0 0 chr15 85612003 85612295 -83459 + AluSq SINE Alu 5 296 -17 6718 118 22 39 chr15 85612295 85612345 -83409 - MER57B-int LTR ERV1 -2585 4952 4903 2351 90 3 16 chr15 85612346 85612694 -83060 + AluY SINE Alu 1 344 0 2523 132 43 14 chr15 85612700 85613139 -82615 - MER57B-int LTR ERV1 -2619 4918 4467 284 0 0 27 chr15 85613139 85613176 -82578 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 7137 50 0 0 chr15 85613176 85614037 -81717 - L1PA3 LINE L1 -13 6142 5282 * 29838 57 2 3 chr15 85614033 85617757 -77997 - L1PA3 LINE L1 -2425 3721 4 371 99 330 11 chr15 85617760 85617851 -77903 - MER57B-int LTR ERV1 -3069 4468 4349 1981 132 3 3 chr15 85617853 85618148 -77606 - AluSp SINE Alu -18 295 1 4132 137 35 35 chr15 85618173 85619089 -76665 - MER52A-int LTR ERV1 -4942 1004 88 4235 173 35 20 chr15 85619089 85619829 -75925 - MER52A LTR ERV1 0 1755 1005 1955 217 275 0 chr15 85619834 85620350 -75404 - MER52A LTR ERV1 -1097 658 1 2292 126 17 105 chr15 85620490 85620966 -74788 - MER57B LTR ERV1 0 434 1 2127 122 10 6 chr15 85621356 85621668 -74086 - AluSq SINE Alu 0 313 1 696 263 78 36 chr15 85622392 85622860 -72894 - MLT1H1 LTR MaLR -1 589 1 207 186 0 0 chr15 85623460 85623503 -72251 + T-rich Low_complexity Low_complexity 1 43 0 381 280 153 56 chr15 85623937 85624440 -71314 - MLT1H1 LTR MaLR 0 555 4 1351 243 119 53 chr15 85624467 85625246 -70508 - L1MEc LINE L1 -3212 3003 2185 1703 208 7 0 chr15 85625246 85625549 -70205 - AluJb SINE Alu -7 305 1 1351 243 119 53 chr15 85625549 85625659 -70095 - L1MEc LINE L1 -4030 2185 2084 1619 186 7 17 chr15 85625660 85625951 -69803 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr15 85625955 85625982 -69772 + AT_rich Low_complexity Low_complexity 1 27 0 2152 187 172 77 chr15 85625983 85626790 -68964 - L1MB2 LINE L1 -7 6444 5561 3613 231 101 61 chr15 85627804 85627866 -67888 - L1MB2 LINE L1 -861 5565 5507 1154 163 110 0 chr15 85627866 85628075 -67679 + MER46A DNA MER2_type 2 233 -3 3613 231 101 61 chr15 85628075 85628877 -66877 - L1MB2 LINE L1 -919 5507 4738 2025 143 0 7 chr15 85628877 85629184 -66570 - AluSx SINE Alu -7 305 1 3613 231 101 61 chr15 85629184 85629250 -66504 - L1MB2 LINE L1 -1688 4738 4676 1767 176 0 50 chr15 85629250 85629573 -66181 - AluSx SINE Alu -5 307 1 3613 231 101 61 chr15 85629573 85630654 -65100 - L1MB2 LINE L1 -1750 4676 3274 265 186 34 0 chr15 85630718 85630777 -64977 - L1MB2 LINE L1 -3096 3330 3270 359 242 39 16 chr15 85630780 85630908 -64846 - L1MB2 LINE L1 -3096 3330 3200 2109 124 0 41 chr15 85631040 85631354 -64400 + AluSx SINE Alu 1 301 -11 37 0 0 0 chr15 85631479 85631516 -64238 + AT_rich Low_complexity Low_complexity 1 37 0 2093 137 3 0 chr15 85631516 85631809 -63945 + AluSx SINE Alu 2 295 -17 2070 126 10 0 chr15 85631815 85632108 -63646 + AluY SINE Alu 5 300 -11 183 100 0 0 chr15 85632158 85632188 -63566 + (TG)n Simple_repeat Simple_repeat 1 30 0 2046 97 0 8 chr15 85632194 85632462 -63292 - AluSq SINE Alu -38 275 10 293 269 16 93 chr15 85632462 85632590 -63164 - L1MA10 LINE L1 -56 6278 6168 2311 91 0 0 chr15 85632590 85632877 -62877 + AluY SINE Alu 5 291 -20 293 269 16 93 chr15 85632877 85632941 -62813 - L1MA10 LINE L1 -166 6168 6101 12095 156 55 38 chr15 85632944 85633164 -62590 - Tigger1 DNA MER2_type 0 2418 2203 1169 196 122 22 chr15 85633164 85633434 -62320 - AluJo SINE Alu -5 297 1 12095 156 55 38 chr15 85633434 85634029 -61725 - Tigger1 DNA MER2_type -215 2203 1619 1899 129 28 11 chr15 85634029 85634316 -61438 - AluSg SINE Alu -18 292 1 12095 156 55 38 chr15 85634316 85635173 -60581 - Tigger1 DNA MER2_type -799 1619 691 2214 123 0 7 chr15 85635173 85635482 -60272 + AluSp SINE Alu 1 307 -6 12095 156 55 38 chr15 85635482 85636185 -59569 - Tigger1 DNA MER2_type -1727 691 1 4294 194 79 78 chr15 85636185 85637948 -57806 - L1MB2 LINE L1 -3938 2488 723 731 212 7 0 chr15 85637950 85638087 -57667 - MLT1A1 LTR MaLR -2 363 226 * 816 115 5 1 chr15 85638078 85657662 -38092 - CER Satellite Satellite -2 19668 1 8094 74 7 0 chr15 85657662 85658741 -37013 - L1PA5 LINE L1 -1938 4208 3122 9746 57 14 9 chr15 85658741 85660683 -35071 + L1PA5 LINE L1 4188 6143 -11 22 0 0 0 chr15 85660683 85660705 -35049 + AT_rich Low_complexity Low_complexity 1 22 0 1696 206 64 11 chr15 85660732 85661168 -34586 + L1MA8 LINE L1 5769 6227 -64 449 97 0 0 chr15 85661169 85661231 -34523 + CER Satellite Satellite 31 92 -4 43 20 0 0 chr15 85661258 85661308 -34446 + AT_rich Low_complexity Low_complexity 1 50 0 780 103 2 0 chr15 85661331 85662846 -32908 - CER Satellite Satellite -3 1518 1 1924 266 22 27 chr15 85662857 85663452 -32302 - L1MCa LINE L1 -5757 669 78 422 366 116 19 chr15 85663700 85664123 -31631 + L2 LINE L2 2065 2528 -786 1003 197 30 0 chr15 85664433 85664636 -31118 - MER2 DNA MER2_type -3 342 134 523 192 48 0 chr15 85664639 85664743 -31011 - Tigger3(Golem) DNA MER2_type -1 3028 2920 387 275 0 0 chr15 85664856 85664936 -30818 - Tigger3(Golem) DNA MER2_type -2949 80 1 * 547 232 16 8 chr15 85664936 85665060 -30694 - MER2 DNA MER2_type -214 131 7 861 207 30 15 chr15 85665494 85665692 -30062 - AluJo SINE Alu -10 302 102 1204 201 8 16 chr15 85666850 85667104 -28650 - AluJo SINE Alu -4 308 57 854 205 0 35 chr15 85667131 85667302 -28452 + AluJo SINE Alu 127 291 -21 331 117 17 17 chr15 85670944 85671004 -24750 - Tigger1 DNA MER2_type -1167 1251 1192 * 4270 190 51 7 chr15 85671002 85671845 -23909 - Tigger1 DNA MER2_type -1537 881 2 665 183 108 5 chr15 85671858 85672044 -23710 - L1MCa LINE L1 -3950 2476 2272 735 197 66 22 chr15 85672046 85672183 -23571 - AluJ SINE Alu -18 294 152 628 231 86 0 chr15 85672330 85672447 -23307 - AluJ SINE Alu -140 172 46 6672 217 85 35 chr15 85672470 85672712 -23042 - L1MCa LINE L1 -4175 2251 2023 2030 124 0 14 chr15 85672712 85673003 -22751 + AluSc SINE Alu 1 287 -22 6672 217 85 35 chr15 85673003 85673075 -22679 - L1MCa LINE L1 -4403 2023 1956 2205 123 0 13 chr15 85673075 85673376 -22378 + AluY SINE Alu 1 297 -14 6672 217 85 35 chr15 85673376 85673433 -22321 - L1MCa LINE L1 -4470 1956 1903 2069 123 0 7 chr15 85673433 85673733 -22021 + AluSg1 SINE Alu 4 301 -8 6672 217 85 35 chr15 85673733 85673986 -21768 - L1MCa LINE L1 -4523 1903 1664 2220 113 0 0 chr15 85673986 85674277 -21477 - AluY SINE Alu -20 291 1 6672 217 85 35 chr15 85674277 85675084 -20670 - L1MCa LINE L1 -4762 1664 899 1270 233 93 32 chr15 85675084 85675428 -20326 - MLT1A1 LTR MaLR 0 365 1 6672 217 85 35 chr15 85675428 85676063 -19691 - L1MCa LINE L1 -5527 899 78 850 148 0 8 chr15 85676079 85676201 -19553 - FLAM_C SINE Alu -12 121 1 260 125 125 111 chr15 85676203 85676242 -19512 - L1MCa LINE L1 -6331 95 53 1978 119 6 70 chr15 85676242 85676431 -19323 - AluSq SINE Alu -7 306 145 1804 173 3 7 chr15 85676431 85676731 -19023 - AluSx SINE Alu -13 299 1 1978 119 6 70 chr15 85676731 85676868 -18886 - AluSq SINE Alu -168 145 1 260 125 125 111 chr15 85676868 85676900 -18854 - L1MCa LINE L1 -6373 53 23 225 284 32 21 chr15 85676943 85677038 -18716 - L1M4 LINE L1 -2246 3900 3805 489 310 106 35 chr15 85677115 85677454 -18300 + L2 LINE L2 2155 2517 -797 642 230 96 6 chr15 85677761 85677938 -17816 - MER2 DNA MER2_type 0 345 153 1579 122 64 83 chr15 85677938 85678164 -17590 + MER4A LTR ERV1 1 219 -445 2176 130 3 0 chr15 85678164 85678465 -17289 - AluSp SINE Alu -11 302 1 1579 122 64 83 chr15 85678465 85678598 -17156 + MER4A LTR ERV1 219 353 -311 466 97 21 65 chr15 85678625 85678718 -17036 + MER4A LTR ERV1 265 353 -311 473 117 11 64 chr15 85678745 85678839 -16915 + MER4A LTR ERV1 265 353 -311 1867 144 85 25 chr15 85678851 85679205 -16549 - THE1C LTR MaLR 0 375 1 542 130 236 24 chr15 85679263 85679386 -16368 + MER4C LTR ERV1 300 448 -17 601 218 0 0 chr15 85679432 85679542 -16212 - Tigger3(Golem) DNA MER2_type 0 3038 2929 3808 135 69 40 chr15 85679655 85680669 -15085 - MER11A LTR ERVK 0 1266 3 350 270 0 0 chr15 85680687 85680761 -14993 - Tigger3(Golem) DNA MER2_type -2955 74 1 * 711 172 39 8 chr15 85680761 85680888 -14866 - MER2 DNA MER2_type -214 131 1 991 174 0 0 chr15 85681177 85681332 -14422 - AluJb SINE Alu -157 155 1 2393 108 73 9 chr15 85681793 85682134 -13620 + THE1B LTR MaLR 1 363 -1 842 243 63 60 chr15 85682723 85683056 -12698 + Charlie1a DNA MER1_type 51 384 -1071 1382 170 109 19 chr15 85683084 85683219 -12535 + AluJb SINE Alu 5 126 -186 6704 125 25 10 chr15 85683219 85684211 -11543 - LTR13 LTR ERVK 0 1007 1 1382 170 109 19 chr15 85684211 85684340 -11414 + AluJb SINE Alu 126 293 -19 2171 201 102 35 chr15 85684340 85684766 -10988 + Charlie1a DNA MER1_type 568 964 -1797 1811 124 44 0 chr15 85684766 85685040 -10714 - AluSx SINE Alu -20 292 7 2171 201 102 35 chr15 85685040 85685310 -10444 + Charlie1a DNA MER1_type 964 1324 -1437 2040 117 0 45 chr15 85685310 85685618 -10136 - AluSc SINE Alu -15 294 1 2171 201 102 35 chr15 85685618 85685695 -10059 + Charlie1a DNA MER1_type 1324 1394 -61 21 0 0 0 chr15 85685976 85685997 -9757 + AT_rich Low_complexity Low_complexity 1 21 0 1765 159 3 0 chr15 85686002 85686308 -9446 + AluSx SINE Alu 1 307 0 30 27 0 0 chr15 85686460 85686497 -9257 + AT_rich Low_complexity Low_complexity 1 37 0 762 233 0 0 chr15 85686741 85686874 -8880 - FLAM_C SINE Alu 0 133 1 3647 164 51 11 chr15 85686923 85687571 -8183 - L1PA16 LINE L1 0 6166 5493 2104 129 0 3 chr15 85687574 85687880 -7874 - AluSq SINE Alu 0 305 1 1667 178 34 3 chr15 85688250 85688543 -7211 - AluJb SINE Alu -10 302 1 2166 153 18 9 chr15 85688662 85688996 -6758 + MER1B DNA MER1_type 1 337 0 796 251 5 43 chr15 85689351 85689562 -6192 + LTR16C LTR ERVL 289 491 0 281 303 84 21 chr15 85689986 85690128 -5626 + MARNA DNA Mariner 276 426 -160 4734 195 111 70 chr15 85691124 85691449 -4305 + LOR1-int LTR ERV1 378 688 -4183 2046 120 3 26 chr15 85691449 85691758 -3996 + AluSc SINE Alu 5 306 -3 4734 195 111 70 chr15 85691758 85693066 -2688 + LOR1-int LTR ERV1 688 2078 -2793 7453 82 57 6 chr15 85693078 85694036 -1718 + LTR13 LTR ERVK 1 1007 0 478 143 48 56 chr15 85694126 85694255 -1499 + LOR1-int LTR ERV1 1584 2060 -5756 1906 159 3 0 chr15 85694255 85694557 -1197 + AluJb SINE Alu 1 303 -9 913 161 0 0 chr15 85694597 85694740 -1014 - FRAM SINE Alu -33 143 1 1151 178 107 105 chr15 85694793 85695372 -382 + LOR1-int LTR ERV1 2902 3481 -3117 474 190 36 44 chr15 85695518 85695655 -99 + LOR1-int LTR ERV1 3536 3671 -2927